BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780829|ref|YP_003065242.1| ATP-dependent protease
ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
         (437 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040506|gb|ACT57302.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/437 (100%), Positives = 437/437 (100%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG
Sbjct: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD
Sbjct: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD
Sbjct: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM
Sbjct: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA
Sbjct: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL
Sbjct: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR
Sbjct: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420

Query: 421 LHIGDFPSETDMYHFIL 437
           LHIGDFPSETDMYHFIL
Sbjct: 421 LHIGDFPSETDMYHFIL 437


>gi|315122053|ref|YP_004062542.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495455|gb|ADR52054.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 437

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/436 (87%), Positives = 417/436 (95%), Gaps = 1/436 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LTFNFSPREIV+ELDRYI+GQ DAKRAVAIALRNRWRRQQL  +LRDE+MPKNILLVGPT
Sbjct: 2   LTFNFSPREIVAELDRYIVGQLDAKRAVAIALRNRWRRQQLSENLRDEVMPKNILLVGPT 61

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKTAISRRLA+LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA+N+VRE+RRDEV
Sbjct: 62  GVGKTAISRRLAKLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAVNLVRENRRDEV 121

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+AS+NAEERILDALVGKTATS TRE+FR+K RDGE+SDKEIDIEVADTS DIS+FDIP
Sbjct: 122 REKASLNAEERILDALVGKTATSTTRELFRQKFRDGEVSDKEIDIEVADTSPDISSFDIP 181

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G GA+VG+LNLSELFSKVMG  RKKKIRMSVQKCYPEL+RDESD+LID+DTVHR+SIQMV
Sbjct: 182 GAGANVGVLNLSELFSKVMGGVRKKKIRMSVQKCYPELVRDESDQLIDIDTVHRESIQMV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+YGIVFLDE DKIVAR+SG+G GVSREGVQRDLLPLVEGSSVSTKYG++NT HILFIAS
Sbjct: 242 EHYGIVFLDEIDKIVARESGDGAGVSREGVQRDLLPLVEGSSVSTKYGTVNTQHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVSRP+DLLPE+QGRFPVRVHLK L++ DFRLILTDTESNLI+QYKELMKTEG+ LD
Sbjct: 302 GAFHVSRPSDLLPEMQGRFPVRVHLKPLSRDDFRLILTDTESNLIVQYKELMKTEGVTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTEDSIDAL+DVAVNLNS VGDIGARRLQTVMERVLEDISFSAS+LQEKTVVIDAEYVRL
Sbjct: 362 FTEDSIDALSDVAVNLNSVVGDIGARRLQTVMERVLEDISFSASELQEKTVVIDAEYVRL 421

Query: 422 HIGDFPSETDMYHFIL 437
           H+GDF SE+D+  +IL
Sbjct: 422 HMGDFSSESDISRYIL 437


>gi|190889691|ref|YP_001976233.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CIAT 652]
 gi|238692525|sp|B3PWI7|HSLU_RHIE6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|190694970|gb|ACE89055.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CIAT 652]
          Length = 435

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 305/434 (70%), Positives = 364/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H+
Sbjct: 362 EDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|327189983|gb|EGE57105.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CNPAF512]
          Length = 435

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 305/434 (70%), Positives = 364/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQSK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H+
Sbjct: 362 EDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|209551554|ref|YP_002283471.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|238065801|sp|B5ZV99|HSLU_RHILW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|209537310|gb|ACI57245.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 435

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/434 (70%), Positives = 363/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRTEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRESFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+FT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLNLEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|116249817|ref|YP_765655.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|166221599|sp|Q1MNB3|HSLU_RHIL3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115254465|emb|CAK05539.1| putative ATP-dependent heat shock protease component [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 435

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/434 (70%), Positives = 363/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYSDLIRDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+FT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKDDFRRILTETEASLIRQYRALMETESLSLEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|86355717|ref|YP_467609.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42]
 gi|123513487|sp|Q2KE54|HSLU_RHIEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|86279819|gb|ABC88882.1| heat shock protease HslVU, subunit HslU chaperone protein
           (ATP-dependent protease ATP-binding subunit hslU)
           [Rhizobium etli CFN 42]
          Length = 435

 Score =  622 bits (1603), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/434 (69%), Positives = 363/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I ++RE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLMREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRATEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETENLNLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRAGAAITIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|241206994|ref|YP_002978090.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860884|gb|ACS58551.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 435

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 303/434 (69%), Positives = 363/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+ DESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYGDLILDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+FT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRALNKDDFRRILTETEASLIRQYRALMETESLSLEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAQNTDLSRFIL 435


>gi|325291499|ref|YP_004277363.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp.
           H13-3]
 gi|325059352|gb|ADY63043.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp.
           H13-3]
          Length = 435

 Score =  618 bits (1593), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/434 (69%), Positives = 364/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  +AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD+ S +  F+IPG  
Sbjct: 123 AHQSAEERVLDALVGSTASPATRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V K Y +L+RDESD+L+D D + R++++ VEN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVSKSYTDLVRDESDKLLDNDMIQREAVKSVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D     V ID EYV+ H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  ++TD+  +IL
Sbjct: 422 GDLAADTDLSRYIL 435


>gi|15887403|ref|NP_353084.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|22653792|sp|Q8UJ87|HSLU_AGRT5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15154910|gb|AAK85869.1| heat shock chaperone [Agrobacterium tumefaciens str. C58]
          Length = 435

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/434 (69%), Positives = 364/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  +AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD+ S +  F+IPG  
Sbjct: 123 AHQSAEERVLDALVGSTASPGTRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V K Y +L+RDESD+L+D + + R++++ VEN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVSKSYTDLVRDESDKLLDNEMIQREAVKSVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D     V ID EYV+ H+
Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  ++TD+  +IL
Sbjct: 422 GDLAADTDLSRYIL 435


>gi|222084250|ref|YP_002542776.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium
           radiobacter K84]
 gi|254802292|sp|B9JG71|HSLU_AGRRK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221721698|gb|ACM24854.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium
           radiobacter K84]
          Length = 436

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/435 (69%), Positives = 366/435 (84%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQL  DLRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLEPDLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPG- 183
           A ++AEER+LDALVG TA+  TR+ FRKKLRDG++ DKEIDIEVADT S +   F+IPG 
Sbjct: 123 AHMSAEERVLDALVGATASPATRDSFRKKLRDGQLDDKEIDIEVADTGSGMPGGFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K MG GR KK+R +V+  Y EL+RDESD+LID + + R++++  E
Sbjct: 183 PGANIGVLNLSEMFGKAMG-GRTKKVRTTVKDSYKELVRDESDKLIDNEAIQREAVRSAE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 242 DDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ L K DFR ILT+ E++LI QYK LM+TE + LDF
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRPLTKEDFRRILTEPEASLIRQYKALMETEDLKLDF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNSTV +IGARRLQTVMERVL++IS++ASD    +V IDA YVR H
Sbjct: 362 TDDAIDALADVAVHLNSTVENIGARRLQTVMERVLDEISYNASDRAGVSVTIDAAYVREH 421

Query: 423 IGDFPSETDMYHFIL 437
           +GD  + TD+  FIL
Sbjct: 422 VGDLANNTDLSRFIL 436


>gi|222147041|ref|YP_002547998.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium
           vitis S4]
 gi|254802293|sp|B9JXW4|HSLU_AGRVS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221734031|gb|ACM34994.1| heat shock chaperone [Agrobacterium vitis S4]
          Length = 435

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/434 (68%), Positives = 359/434 (82%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQNDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +++E +R EV  +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLIKEKKRLEVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+LDALVG TA+  TR+ FRKKLR GE+ DKEIDIEVA+TSS +  F+IPG  
Sbjct: 123 AHAGAEERVLDALVGATASPATRDSFRKKLRAGELDDKEIDIEVAETSSGMPGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA+VGILNLS++F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++ VEN
Sbjct: 183 GANVGILNLSDMFGKAMG-GRTKKVRTTVKTSYADLIRDESDKLIDNEVIQREAVKSVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+   G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIANREGAMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV LK+L K DFR ILT+TE++LI QY  LM TE + L+FT
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELKALTKEDFRRILTETEASLIRQYIALMATEQLDLEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALADVAVNLNS++ +IGARRLQTVMERVL DISF+A D     V+ID+ YVR H+
Sbjct: 362 EDAIDALADVAVNLNSSIENIGARRLQTVMERVLYDISFNAPDRGGAKVMIDSAYVREHV 421

Query: 424 GDFPSETDMYHFIL 437
           G+  ++ D+  +IL
Sbjct: 422 GEIAADADLSRYIL 435


>gi|15963811|ref|NP_384164.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
           1021]
 gi|307310999|ref|ZP_07590644.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti BL225C]
 gi|307321943|ref|ZP_07601325.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti AK83]
 gi|22653794|sp|Q92TA7|HSLU_RHIME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15072986|emb|CAC41445.1| Probable heat shock protein [Sinorhizobium meliloti 1021]
 gi|306892413|gb|EFN23217.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti AK83]
 gi|306899679|gb|EFN30306.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti BL225C]
          Length = 435

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/434 (66%), Positives = 361/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ DKEI+++VA+  S    F+IPG  
Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAEAGSPGGAFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +G GR KK++ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 183 GANIGVLNLSEMFGKALG-GRTKKVKTTVKDSYALLVNDESDKLLDNEQIQREAVAAAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+D+SF+A D   + V IDAEYVR H+
Sbjct: 362 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDAEYVRRHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 422 GDLAANTDLSRYIL 435


>gi|150398458|ref|YP_001328925.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium
           medicae WSM419]
 gi|166221612|sp|A6UEL0|HSLU_SINMW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150029973|gb|ABR62090.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           medicae WSM419]
          Length = 435

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/434 (66%), Positives = 363/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGVG
Sbjct: 3   SFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ DKEI+++VA+T +    F+IPG  
Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAETGNPGGAFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +G GR +KI+ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 183 GANIGVLNLSEMFGKALG-GRTRKIKTTVKDSYALLVNDESDKLLDNEQIQREAVASAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVTLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LNS V +IGARRLQTVMERVL+D+SF+A D   + V IDA+YVR+H+
Sbjct: 362 EDAIDALAEVAVQLNSNVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDADYVRVHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 422 GDLAANTDLSRYIL 435


>gi|227823917|ref|YP_002827890.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium
           fredii NGR234]
 gi|254802314|sp|C3MBC8|HSLU_RHISN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|227342919|gb|ACP27137.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Sinorhizobium
           fredii NGR234]
          Length = 434

 Score =  598 bits (1542), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/434 (66%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGITLVREKKRAEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ +KEI+I++A+T +    F+IPG  
Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDEKEIEIDIAETGAP-GGFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +G GR +K++ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 182 GANIGVLNLSEMFGKALG-GRTRKVKTTVKDSYELLVNDESDKLLDNEQIQREAMAAAEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 241 DGIVFLDEIDKIAARDGGIGAGVSREGVQRDLLPLVEGTTVATKYGPMKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+DISF+A D    T++IDA+YVR H+
Sbjct: 361 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDISFNAPDRGGDTLMIDADYVRKHV 420

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 421 GDLAANTDLSRYIL 434


>gi|153008177|ref|YP_001369392.1| ATP-dependent protease ATP-binding subunit HslU [Ochrobactrum
           anthropi ATCC 49188]
 gi|166221592|sp|A6WX59|HSLU_OCHA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|151560065|gb|ABS13563.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           anthropi ATCC 49188]
          Length = 434

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/434 (65%), Positives = 361/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +VRE RRD+V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAITLVREKRRDDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEVADT S  S F+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVADTGSGPS-FEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G++NLS++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVMNLSDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVTED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGA
Sbjct: 241 EGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+ T
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLEIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++IS++A D    T VIDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMERVLDEISYTAPDKTGATFVIDAAYVKDKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GSLAKNTDLSRFIL 434


>gi|163757482|ref|ZP_02164571.1| putative ATP-dependent heat shock protease component [Hoeflea
           phototrophica DFL-43]
 gi|162284984|gb|EDQ35266.1| putative ATP-dependent heat shock protease component [Hoeflea
           phototrophica DFL-43]
          Length = 436

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/435 (65%), Positives = 358/435 (82%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPRE V+ELDR+IIGQ+DAKRAVAIALRNRWRRQQL   LR+E+MPKNIL++GPTGVG
Sbjct: 3   TFSPRETVTELDRFIIGQKDAKRAVAIALRNRWRRQQLTGPLREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+  I +VRE +R EV  +
Sbjct: 63  KTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEAGIMLVRERKRGEVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A +NAEER+LDALVG TA+  TR+ FRKKLRDG + DKEI+IEVAD S+  +  FD+PG 
Sbjct: 123 ARLNAEERVLDALVGATASPATRDSFRKKLRDGLLDDKEIEIEVADNSAGGMPQFDLPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G+LNL++LF K MG GR +KI+ +V+  Y  L+ DESD+L+DMD +H+++++  E
Sbjct: 183 PGGNIGVLNLNDLFGKAMG-GRTRKIKTTVRDSYDTLIGDESDKLLDMDQIHQEALKSAE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVF+DE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASG
Sbjct: 242 DDGIVFIDEIDKIANREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LM TE + L+F
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALTKDDFRRILTETEASLIKQYVALMGTEDMTLEF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALA+VAV+LN ++ +IGARRLQTVMERVL+DISF+A D    T+ ID++YVR +
Sbjct: 362 TEDAIDALAEVAVHLNGSIENIGARRLQTVMERVLDDISFTAPDQSGSTITIDSDYVRKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 422 VGDLAQNTDLSRFIL 436


>gi|23502927|ref|NP_699054.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis
           1330]
 gi|163844097|ref|YP_001628501.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC
           23445]
 gi|225626459|ref|ZP_03784498.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str.
           Cudo]
 gi|254690212|ref|ZP_05153466.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 6 str. 870]
 gi|254694702|ref|ZP_05156530.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 3 str. Tulya]
 gi|254707400|ref|ZP_05169228.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis M163/99/10]
 gi|254709057|ref|ZP_05170868.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis B2/94]
 gi|256030582|ref|ZP_05444196.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis M292/94/1]
 gi|256060044|ref|ZP_05450226.1| ATP-dependent protease ATP-binding subunit HslU [Brucella neotomae
           5K33]
 gi|256158578|ref|ZP_05456468.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M490/95/1]
 gi|256253989|ref|ZP_05459525.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           B1/94]
 gi|256258467|ref|ZP_05464003.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 9 str. C68]
 gi|256370477|ref|YP_003107988.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|260169488|ref|ZP_05756299.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp.
           F5/99]
 gi|260567450|ref|ZP_05837920.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 4 str. 40]
 gi|260755752|ref|ZP_05868100.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 6 str. 870]
 gi|260884778|ref|ZP_05896392.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 9 str. C68]
 gi|261215029|ref|ZP_05929310.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 3 str. Tulya]
 gi|261221129|ref|ZP_05935410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           B1/94]
 gi|261314887|ref|ZP_05954084.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M163/99/10]
 gi|261316555|ref|ZP_05955752.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis B2/94]
 gi|261324020|ref|ZP_05963217.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           neotomae 5K33]
 gi|261759013|ref|ZP_06002722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           F5/99]
 gi|265987629|ref|ZP_06100186.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M292/94/1]
 gi|265997089|ref|ZP_06109646.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M490/95/1]
 gi|297247307|ref|ZP_06931025.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv.
           5 str. B3196]
 gi|32129634|sp|Q8FY12|HSLU_BRUSU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043905|sp|B0CJH9|HSLU_BRUSI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|23348960|gb|AAN30969.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis 1330]
 gi|163674820|gb|ABY38931.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis ATCC
           23445]
 gi|225618116|gb|EEH15159.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str.
           Cudo]
 gi|256000640|gb|ACU49039.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|260156968|gb|EEW92048.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 4 str. 40]
 gi|260675860|gb|EEX62681.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 6 str. 870]
 gi|260874306|gb|EEX81375.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 9 str. C68]
 gi|260916636|gb|EEX83497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 3 str. Tulya]
 gi|260919713|gb|EEX86366.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           B1/94]
 gi|261295778|gb|EEX99274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis B2/94]
 gi|261300000|gb|EEY03497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           neotomae 5K33]
 gi|261303913|gb|EEY07410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M163/99/10]
 gi|261738997|gb|EEY26993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           F5/99]
 gi|262551557|gb|EEZ07547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M490/95/1]
 gi|264659826|gb|EEZ30087.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M292/94/1]
 gi|297174476|gb|EFH33823.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv.
           5 str. B3196]
          Length = 434

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|254713516|ref|ZP_05175327.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M644/93/1]
 gi|254716128|ref|ZP_05177939.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M13/05/1]
 gi|261217898|ref|ZP_05932179.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M13/05/1]
 gi|261321252|ref|ZP_05960449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M644/93/1]
 gi|260922987|gb|EEX89555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M13/05/1]
 gi|261293942|gb|EEX97438.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M644/93/1]
          Length = 434

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL +ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLNEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|306842805|ref|ZP_07475445.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2]
 gi|306286999|gb|EFM58510.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2]
          Length = 434

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|254718122|ref|ZP_05179933.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp.
           83/13]
 gi|265983074|ref|ZP_06095809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           83/13]
 gi|306839749|ref|ZP_07472551.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF
           2653]
 gi|264661666|gb|EEZ31927.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           83/13]
 gi|306405209|gb|EFM61486.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF
           2653]
          Length = 434

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGIP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|254700711|ref|ZP_05162539.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           5 str. 513]
 gi|261751220|ref|ZP_05994929.1| heat shock protein hslU [Brucella suis bv. 5 str. 513]
 gi|261740973|gb|EEY28899.1| heat shock protein hslU [Brucella suis bv. 5 str. 513]
          Length = 434

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + + ++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQGALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|17988331|ref|NP_540965.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045683|ref|ZP_05448561.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256112404|ref|ZP_05453325.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 3 str. Ether]
 gi|260562984|ref|ZP_05833470.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M]
 gi|265992104|ref|ZP_06104661.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993841|ref|ZP_06106398.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether]
 gi|22653793|sp|Q8YE30|HSLU_BRUME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|17984106|gb|AAL53229.1| heat shock protein hslu [Brucella melitensis bv. 1 str. 16M]
 gi|260153000|gb|EEW88092.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M]
 gi|262764822|gb|EEZ10743.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether]
 gi|263003170|gb|EEZ15463.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1]
          Length = 434

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|225853510|ref|YP_002733743.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis ATCC 23457]
 gi|256263008|ref|ZP_05465540.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9]
 gi|254802298|sp|C0RFW7|HSLU_BRUMB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225641875|gb|ACO01789.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis
           ATCC 23457]
 gi|263092881|gb|EEZ17056.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9]
 gi|326410077|gb|ADZ67142.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis M28]
 gi|326539793|gb|ADZ88008.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis
           M5-90]
          Length = 434

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIALVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|306843498|ref|ZP_07476099.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1]
 gi|306276189|gb|EFM57889.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1]
          Length = 434

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVG+TA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGRTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAG-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|62290923|ref|YP_222716.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700834|ref|YP_415408.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis biovar Abortus 2308]
 gi|189025136|ref|YP_001935904.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           S19]
 gi|237816430|ref|ZP_04595423.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus
           str. 2308 A]
 gi|254696329|ref|ZP_05158157.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254731245|ref|ZP_05189823.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 4 str. 292]
 gi|260546185|ref|ZP_05821925.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038]
 gi|260758976|ref|ZP_05871324.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 4 str. 292]
 gi|260760700|ref|ZP_05873043.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|81309351|sp|Q57AH9|HSLU_BRUAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123740942|sp|Q2YQZ4|HSLU_BRUA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238689414|sp|B2S978|HSLU_BRUA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62197055|gb|AAX75355.1| HslU, heat shock protein HslVU, ATPase subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616935|emb|CAJ12036.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:Heat shock protein HslVU [Brucella melitensis
           biovar Abortus 2308]
 gi|189020708|gb|ACD73430.1| CbxX/CfqX superfamily [Brucella abortus S19]
 gi|237788497|gb|EEP62712.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus
           str. 2308 A]
 gi|260096292|gb|EEW80168.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038]
 gi|260669294|gb|EEX56234.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 4 str. 292]
 gi|260671132|gb|EEX57953.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 2 str. 86/8/59]
          Length = 434

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTV+E+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVIEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|294851308|ref|ZP_06791981.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026]
 gi|294819897|gb|EFG36896.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026]
          Length = 434

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEV+D+ +   NF IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDNKEIEIEVSDSGAS-PNFKIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|148559450|ref|YP_001259884.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ovis ATCC
           25840]
 gi|166221464|sp|A5VT37|HSLU_BRUO2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|148370707|gb|ABQ60686.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ovis ATCC
           25840]
          Length = 434

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/434 (64%), Positives = 361/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRR A+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRPAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVE ++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEDTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|110635818|ref|YP_676026.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1]
 gi|122965529|sp|Q11CL4|HSLU_MESSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110286802|gb|ABG64861.1| heat shock protein HslVU, ATPase subunit HslU [Chelativorans sp.
           BNC1]
          Length = 436

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/434 (63%), Positives = 355/434 (81%), Gaps = 2/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ++AKRAVAIALRNRWRRQQL   LR+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQKEAKRAVAIALRNRWRRQQLEPGLREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R+ V  +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAIALTREKMREGVEAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+L+ALVG+TA+  TR+ FR+KLR GE+ DKEI+I+VAD    + +F+IPG  
Sbjct: 123 AHLNAEERVLEALVGRTASPATRDSFRQKLRSGELDDKEIEIQVADAGGGMGSFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN++++  K MG GR K ++ +V+  Y  L+ DESD+L+D D V R ++   EN
Sbjct: 183 GANIGVLNINDMLQKAMGGGRTKTVKTTVKDSYKFLINDESDKLLDQDEVVRRALSSAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGA
Sbjct: 243 DGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LM+TEG+ L+FT
Sbjct: 303 FHVAKPSDLLPELQGRLPIRVELRALEKEDFRRILTETEASLIKQYIALMETEGVELEFT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+I  LA+VAV+LN++V +IGARRLQTVMERVL++IS++A D     +VIDA YV  H+
Sbjct: 363 EDAIVRLAEVAVDLNASVENIGARRLQTVMERVLDEISYNAPDRSGSKMVIDAAYVDQHV 422

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 423 GDLAKNTDLSRFIL 436


>gi|239833120|ref|ZP_04681449.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           intermedium LMG 3301]
 gi|239825387|gb|EEQ96955.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           intermedium LMG 3301]
          Length = 441

 Score =  574 bits (1480), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/434 (64%), Positives = 356/434 (82%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 10  NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI +VRE RR++V+ +
Sbjct: 70  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEVAITLVREKRREDVKAK 129

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+L+ALVGKTA+  TR+ FRKKLR+ E+ DKEI+IEVADT S  S F+IPG  
Sbjct: 130 AHLNAEERVLEALVGKTASPATRDSFRKKLRNNELDDKEIEIEVADTGSGPS-FEIPGMP 188

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G++NLS++  K MG GR K  + +V+  Y  L+ DESD+L+D + + ++++++ E+
Sbjct: 189 GANIGVMNLSDMLGKAMG-GRTKTRKTTVKDSYAILINDESDKLLDQEQIVQEALRVTED 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 248 EGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 307

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L FT
Sbjct: 308 FHVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLTFT 367

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++ISF+A D       IDA YV+  I
Sbjct: 368 DDAIDALADIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKTGAVFTIDAAYVKDKI 427

Query: 424 GDFPSETDMYHFIL 437
                 TD+  FIL
Sbjct: 428 DGLAKNTDLSRFIL 441


>gi|319780233|ref|YP_004139709.1| heat shock protein HslVU, ATPase HslU [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166121|gb|ADV09659.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 436

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/435 (64%), Positives = 355/435 (81%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +
Sbjct: 63  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183
           A +NAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI++EVADT S  +  F+IPG 
Sbjct: 123 AHVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEVEVADTGSGGMPGFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   E
Sbjct: 183 PGANIGVLNINDMLSKAMGGKKTKMRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAAE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG
Sbjct: 243 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L F
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALEKDDFVRILTETEASLIKQYIALMKTEGVELTF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  H
Sbjct: 362 TDDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 421

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 422 VGDLSRNTDLSRFIL 436


>gi|13474176|ref|NP_105744.1| ATP-dependent protease ATP-binding subunit HslU [Mesorhizobium loti
           MAFF303099]
 gi|14024928|dbj|BAB51530.1| heat shock protein; ATP-dependent HSL protease ATP-binding subunit;
           HslU [Mesorhizobium loti MAFF303099]
          Length = 443

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/435 (65%), Positives = 354/435 (81%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 10  TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +
Sbjct: 70  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 129

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183
           A INAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG 
Sbjct: 130 AHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPGM 189

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   E
Sbjct: 190 PGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDATE 249

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG
Sbjct: 250 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 308

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L F
Sbjct: 309 AFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLTF 368

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  H
Sbjct: 369 TDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 428

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 429 VGDLSRNTDLSRFIL 443


>gi|22653795|sp|Q98CU1|HSLU_RHILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 436

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/435 (65%), Positives = 354/435 (81%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +
Sbjct: 63  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183
           A INAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG 
Sbjct: 123 AHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   E
Sbjct: 183 PGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDATE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG
Sbjct: 243 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L F
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLTF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  H
Sbjct: 362 TDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 421

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 422 VGDLSRNTDLSRFIL 436


>gi|260460981|ref|ZP_05809230.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium
           opportunistum WSM2075]
 gi|259033015|gb|EEW34277.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium
           opportunistum WSM2075]
          Length = 436

 Score =  571 bits (1472), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/436 (65%), Positives = 358/436 (82%), Gaps = 6/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +
Sbjct: 63  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183
           A +NAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG 
Sbjct: 123 AHVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGTGGMPGFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            GA++G+LN++++ SK MG G+K K+R  +V++ Y  L+ DESD+L+D D V R ++   
Sbjct: 183 PGANIGVLNINDMLSKAMG-GKKTKLRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAA 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           EN GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIAS
Sbjct: 242 ENDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L 
Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELRALEKEDFVRILTETEASLIKQYIALMKTEGVELT 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  
Sbjct: 361 FTDDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEK 420

Query: 422 HIGDFPSETDMYHFIL 437
           H+GD    TD+  FIL
Sbjct: 421 HVGDLSRNTDLSRFIL 436


>gi|90420984|ref|ZP_01228888.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334762|gb|EAS48538.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 434

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 281/434 (64%), Positives = 353/434 (81%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL   LR+E+MPKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEGSLREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ +
Sbjct: 63  KTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+L+ALVGKTA+  TR+ FRKKLR GE+ DKEID+EV+DTS+ +   DIPG  
Sbjct: 123 AHQGAEDRVLNALVGKTASPATRDSFRKKLRAGELDDKEIDVEVSDTSNPMGGMDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG  R K+ R SV++ Y  L+ +ESD+L+D + + R++I  VEN
Sbjct: 183 GANIGVLNLSEMFGK-MGQ-RTKQRRTSVRESYDLLIGEESDKLLDQEQLVREAISSVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+  +D  +G GVSREGVQRDLLPLVEG++V+TK+GS+ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKVANKDGQSGAGVSREGVQRDLLPLVEGTTVATKHGSVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LMKTE + L  T
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIKQYIALMKTENVDLVIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD AV LN ++ +IGARRLQTVMERVL+DISF A D   ++  +DA YV   +
Sbjct: 361 DDAIDALADTAVALNGSIENIGARRLQTVMERVLDDISFEAPDKSGESCTVDAAYVHKAL 420

Query: 424 GDFPSETDMYHFIL 437
                +TD+  FIL
Sbjct: 421 DGIAGDTDLSRFIL 434


>gi|49475020|ref|YP_033061.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae
           str. Houston-1]
 gi|62286807|sp|Q6G5G0|HSLU_BARHE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49237825|emb|CAF27020.1| Heat shock protein hslU [Bartonella henselae str. Houston-1]
          Length = 436

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/435 (63%), Positives = 353/435 (81%), Gaps = 7/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +RDE+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQSDAKRSVAIALRNRWRRQQLDGPMRDEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKVKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            INAEER+LDALVGKTA+  TRE FRKKLRDGE+ +KEI+IEV+D +S+  S FDIPG  
Sbjct: 125 HINAEERVLDALVGKTASPATRESFRKKLRDGELDEKEIEIEVSDNNSNSTSTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GA +GI+NLSE+F K+   G + K+R  +V+  +  L+ DES++L+D D + ++++++ E
Sbjct: 185 GAQMGIMNLSEIFGKM---GNRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASG
Sbjct: 242 NDGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ 
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YV+  
Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKKS 421

Query: 423 IGDFPSETDMYHFIL 437
           IGD  ++ D+  FIL
Sbjct: 422 IGDLAADVDLSRFIL 436


>gi|114707003|ref|ZP_01439902.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537553|gb|EAU40678.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 433

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/434 (62%), Positives = 352/434 (81%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           ++SPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL   LR+E+MPKNIL++GPTGVG
Sbjct: 3   DYSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEPGLREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+L+ALVGK+A+  T++ FRKKLR GE+ +KEID+EV+DTS+ +   DIPG  
Sbjct: 123 AHKGAEDRVLEALVGKSASPATKDSFRKKLRSGELDEKEIDVEVSDTSNPMGGMDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K M   R K++R +V+  Y  L+ +ESD+L+D + + R++++ V+N
Sbjct: 183 GANIGVLNLSEMFGKAM--NRTKQVRTTVRDSYDLLIGEESDKLLDQEQLTREAVEAVQN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+  +D G+  GVSREGVQRDLLPLVEG++V+TK+G + TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKVANKD-GHSAGVSREGVQRDLLPLVEGTTVATKHGPVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L + DFR ILT+TE++LI QY  LMKTE + L  T
Sbjct: 300 FHVSKPSDLLPELQGRLPIRVELRALTREDFRRILTETEASLIKQYVALMKTENVTLHVT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALAD AV LN +V +IGARRLQTVMERVL+DISF A D   +T  IDA YV   +
Sbjct: 360 EDAIDALADTAVKLNGSVENIGARRLQTVMERVLDDISFEAPDKGGETYTIDAAYVHKAL 419

Query: 424 GDFPSETDMYHFIL 437
                +TD+  FIL
Sbjct: 420 DGIAGDTDLSRFIL 433


>gi|154251693|ref|YP_001412517.1| ATP-dependent protease ATP-binding subunit HslU [Parvibaculum
           lavamentivorans DS-1]
 gi|171769575|sp|A7HSH7|HSLU_PARL1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|154155643|gb|ABS62860.1| heat shock protein HslVU, ATPase subunit HslU [Parvibaculum
           lavamentivorans DS-1]
          Length = 435

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/434 (61%), Positives = 351/434 (80%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQLP  LRDE++PKNIL++GPTGVG
Sbjct: 3   SFSPREIVSELDRYIVGQRDAKRAVAIALRNRWRRQQLPDALRDEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV++A+ + RE +R +V+ +
Sbjct: 63  KTEISRRLAKLAEAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIALAMTRERKRKDVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AE R+LDALVG  A+  TRE FR+KLRDGE+ +KEI++EVAD+   +  FDIPG  
Sbjct: 123 AHVAAEGRVLDALVGANASEATRESFRRKLRDGELDEKEIEVEVADSGGGMPTFDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NLS++  K  G GR K  RM+V+  Y  L+ +ESD+L+D + + +++I+ VEN
Sbjct: 183 GSQMGMINLSDIMGKAFG-GRTKTRRMAVRDSYDVLVAEESDKLLDQEQLTQEAIRSVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKICARAERQGGDVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L+K D R +LT+ E++LI QY  L+ TE + LDFT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELQALSKDDMRRVLTEPEASLIKQYVALLNTENVTLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D IDA+AD+A ++NSTV +IGARRL TVMERVL+++SF+A+D   +TV ID  YVR H+
Sbjct: 362 DDGIDAIADIATSVNSTVENIGARRLHTVMERVLDEVSFAATDKAGETVTIDGAYVRKHL 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLSKNTDLSKFIL 435


>gi|319405092|emb|CBI78696.1| heat shock protein [Bartonella sp. AR 15-3]
          Length = 435

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/434 (62%), Positives = 352/434 (81%), Gaps = 6/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HINAEERVLDALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           A +GI+NLS+LF K+   G + KIR  +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 AQMGIMNLSDLFGKM---GVRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 242 DGIVFIDEIDKIATRDGGATATVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  I
Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421

Query: 424 GDFPSETDMYHFIL 437
           G+  S+ D+  F+L
Sbjct: 422 GELASDIDLSRFVL 435


>gi|319408004|emb|CBI81658.1| heat shock protein [Bartonella schoenbuchensis R1]
          Length = 436

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/435 (62%), Positives = 355/435 (81%), Gaps = 7/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ+DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVAD SS+    FDIPG  
Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNSSNGTPTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GA +GI++LS++F K+   G + KIR  +V+  +  L+ DES++L+D D + ++++++ E
Sbjct: 185 GAQMGIMSLSDIFGKM---GTRTKIRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVF+DE DKI  RD G G  VSREGVQRDLLPLVEG++V+TKYG I TDHILFIASG
Sbjct: 242 NDGIVFIDEIDKIATRDGGAGATVSREGVQRDLLPLVEGTTVATKYGQIKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ 
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YV+  
Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKQS 421

Query: 423 IGDFPSETDMYHFIL 437
           IGD  ++ D+  FIL
Sbjct: 422 IGDLAADVDLSRFIL 436


>gi|240849874|ref|YP_002971262.1| heat shock protein HslU [Bartonella grahamii as4aup]
 gi|240266997|gb|ACS50585.1| heat shock protein HslU [Bartonella grahamii as4aup]
          Length = 436

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/434 (63%), Positives = 353/434 (81%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDE++E+A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEIKEKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVAD +S+  S FDIPG  
Sbjct: 125 HVNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLS++  K MGS R K  + +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 GAQMGIMNLSDILGK-MGS-RTKVRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++VSTKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTVSTKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YVR  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFTIDAAYVRKSI 422

Query: 424 GDFPSETDMYHFIL 437
           G+  ++ D+  FIL
Sbjct: 423 GELAADIDLSRFIL 436


>gi|319898329|ref|YP_004158422.1| heat shock protein [Bartonella clarridgeiae 73]
 gi|319402293|emb|CBI75832.1| heat shock protein [Bartonella clarridgeiae 73]
          Length = 435

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/438 (62%), Positives = 353/438 (80%), Gaps = 6/438 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +   FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPT
Sbjct: 1   MCIVFSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RD V
Sbjct: 61  GVGKTGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDGV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           + +A INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIP
Sbjct: 121 KAKAHINAEERVLDALVGKTASPVTRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIP 180

Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G  GA +GI+NLS++F K+   G + KIR  +V+  +  L+ DES++L+D D + +++++
Sbjct: 181 GMPGAQMGIMNLSDIFGKM---GIRTKIRKATVRDAFKPLIDDESEKLLDQDQIIQEALR 237

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           + EN GIVF+DE DKI  RD G G  VSREGVQRDLLPLVEG++++TKYG I TDHILFI
Sbjct: 238 VAENDGIVFIDEIDKIATRDGGAGAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFI 297

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + 
Sbjct: 298 ASGAFHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYVALMATEEVH 357

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+ T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YV
Sbjct: 358 LEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYV 417

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  IG+  S+ D+  FIL
Sbjct: 418 RKSIGELASDIDLSRFIL 435


>gi|319406537|emb|CBI80179.1| heat shock protein [Bartonella sp. 1-1C]
          Length = 435

 Score =  558 bits (1437), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/434 (62%), Positives = 352/434 (81%), Gaps = 6/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            +NAEER+L+ALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           A +GI+NLS++F K+   G + K+R  +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 AQMGIMNLSDIFGKM---GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 242 DGIVFIDEIDKIATRDGGATAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  I
Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421

Query: 424 GDFPSETDMYHFIL 437
           GD  S+ D+  F+L
Sbjct: 422 GDLASDIDLSRFVL 435


>gi|319403621|emb|CBI77206.1| heat shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/434 (61%), Positives = 352/434 (81%), Gaps = 6/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            +NAEER+L+ALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           A +GI+NLS++F K+   G + K+R  +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 AQMGIMNLSDIFGKM---GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 242 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  I
Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421

Query: 424 GDFPSETDMYHFIL 437
           G+  S+ D+  F+L
Sbjct: 422 GELASDIDLSRFVL 435


>gi|49473863|ref|YP_031905.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana
           str. Toulouse]
 gi|62286804|sp|Q6G0P9|HSLU_BARQU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49239366|emb|CAF25699.1| Heat shock protein hslU [Bartonella quintana str. Toulouse]
          Length = 436

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/438 (63%), Positives = 353/438 (80%), Gaps = 5/438 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +   FSPREIVSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPT
Sbjct: 1   MCIVFSPREIVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDGPMREEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV
Sbjct: 61  GVGKTGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDI 181
           + +A INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVAD +S+  S FDI
Sbjct: 121 KVKAHINAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDI 180

Query: 182 PG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           PG  GA +GI+NLSE+F K MGS R K  + +V+  +  L+ DES++L+D D + +++++
Sbjct: 181 PGMPGAQMGIMNLSEIFGK-MGS-RIKVRKTTVKDSFKPLIDDESEKLLDQDQIIQEALR 238

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           + EN GIVF+DE DKI  RD      VSREGVQRDLLPLVEG++++TKYG I TDHILFI
Sbjct: 239 VAENDGIVFIDEIDKIATRDGAVSAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFI 298

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM  E + 
Sbjct: 299 ASGAFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMAMEEVR 358

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+ T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YV
Sbjct: 359 LEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYV 418

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  IGD  ++ D+  FIL
Sbjct: 419 RQSIGDLAADLDLSRFIL 436


>gi|121602788|ref|YP_989509.1| ATP-dependent protease ATP-binding subunit [Bartonella
           bacilliformis KC583]
 gi|166221461|sp|A1UU56|HSLU_BARBK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120614965|gb|ABM45566.1| heat shock protein HslVU, ATPase subunit HslU [Bartonella
           bacilliformis KC583]
          Length = 436

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/434 (62%), Positives = 353/434 (81%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ+DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPREIVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQIREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+E+A
Sbjct: 65  TEIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVQERA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-- 183
            INAEER+L+ALVGKTA+  TR+ FR+KLR GE+ DKEI+IEVA+ S++ +  FDIPG  
Sbjct: 125 HINAEERVLEALVGKTASPATRDNFRQKLRAGELDDKEIEIEVANNSNNSAPTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLS++F K+   GR K  + +V+  +  L+ DES++L+D D + ++++ + EN
Sbjct: 185 GAQMGIMNLSDIFGKI--GGRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALCITEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  +D G G  +SREGVQRDLLPLVEG+ V+TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATQDGGAGAAISREGVQRDLLPLVEGTIVATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L K D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNALTKEDLRRILTEPEASLIKQYIALMATEDVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID LAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YVR  +
Sbjct: 363 DDAIDTLADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDATYVRQSV 422

Query: 424 GDFPSETDMYHFIL 437
           G+  S+ D+  FIL
Sbjct: 423 GELASDVDLSRFIL 436


>gi|163867504|ref|YP_001608703.1| ATP-dependent protease ATP-binding subunit HslU [Bartonella
           tribocorum CIP 105476]
 gi|189043904|sp|A9IMR3|HSLU_BART1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|161017150|emb|CAK00708.1| heat shock protein [Bartonella tribocorum CIP 105476]
          Length = 436

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/435 (61%), Positives = 353/435 (81%), Gaps = 7/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++A+++VRE +RDE++E+A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAVSLVREKKRDEIKEKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVAD +S+  S FDIPG  
Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GA +GI+NLS++  K+   G + K+R  +V+  +  L+ DES++L+D + + ++++++ E
Sbjct: 185 GAQMGIMNLSDILGKM---GNRTKVRKTTVRDAFKPLIDDESEKLLDQEQIIQEALRVAE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVF+DE DKI  +D G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASG
Sbjct: 242 NDGIVFIDEIDKIATKDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ 
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YVR  
Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYVRKS 421

Query: 423 IGDFPSETDMYHFIL 437
           IG+  ++ D+  FIL
Sbjct: 422 IGELAADIDLSRFIL 436


>gi|209883547|ref|YP_002287404.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha
           carboxidovorans OM5]
 gi|209871743|gb|ACI91539.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha
           carboxidovorans OM5]
          Length = 436

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/439 (61%), Positives = 349/439 (79%), Gaps = 5/439 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++G
Sbjct: 1   MKPMTDFSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRLQLEGGLREEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE +R 
Sbjct: 61  PTGVGKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRK 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +VR +A + AEER+LDALVG  A+S TRE FR++LRDGE++DKEI++E        S F+
Sbjct: 121 DVRARAQLAAEERVLDALVGANASSGTRESFRRRLRDGELNDKEIEVET-QAGGGPSMFE 179

Query: 181 IPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           IPG  GA +G ++L ++F K MG GR K  R++V+  +  L+ +ESD+L+D + + RD+I
Sbjct: 180 IPGMPGAQMGAISLGDIFGK-MG-GRTKTRRLTVEDSHEVLVNEESDKLLDDEALTRDAI 237

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +VEN GIVFLDE DKI  RD      VSREGVQRDLLPL+EG++VSTK+G + TDHILF
Sbjct: 238 HVVENNGIVFLDEVDKICVRDGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILF 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E +LI QY  LMKTEG+
Sbjct: 298 IASGAFHIAKPSDLLPELQGRLPIRVELQALTRDDLRRILTEPEGSLIKQYIALMKTEGV 357

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+ T+++IDALADVAV++NS+V +IGARRLQTVMERVL+++SF A D+  +T+ IDA Y
Sbjct: 358 TLEITDEAIDALADVAVSVNSSVENIGARRLQTVMERVLDEVSFHAPDMNGQTITIDAAY 417

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+ HIGD    TD+  FIL
Sbjct: 418 VQKHIGDLAKNTDLSRFIL 436


>gi|288959726|ref|YP_003450067.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288912034|dbj|BAI73523.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 446

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/438 (62%), Positives = 345/438 (78%), Gaps = 5/438 (1%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T  FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTG
Sbjct: 10  TAAFSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRQQLPDGLREEVLPKNILMIGPTG 69

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ AI + RE  R EV 
Sbjct: 70  VGKTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAIGLTRERLRKEVA 129

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDI 181
            +A + AEER+LDAL G +A++ TR  FRK LR+G ++DKEI+I+VADT +   +  FDI
Sbjct: 130 AKAELRAEERVLDALCGDSASAETRAKFRKMLREGTLNDKEIEIQVADTGAPAGMPTFDI 189

Query: 182 PG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           PG  G  +G+LNL+++F K+MG GR K  RM+V + +  LM +ESD+L+D + V  ++I+
Sbjct: 190 PGVPGGQMGMLNLNDMFGKMMG-GRTKTRRMTVSESHGVLMAEESDKLLDQEKVVAEAIR 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            VE  GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFI
Sbjct: 249 AVEQNGIVFLDEIDKISARSDARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFI 308

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFHV++P+DLLPE+QGR P+RV LK+L++ DF+ ILT+ E++LI QYK LMKTE + 
Sbjct: 309 ASGAFHVAKPSDLLPELQGRLPIRVELKALSQDDFKRILTEPEASLIRQYKALMKTEEVD 368

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FT+DSID LA +A  +NS+V +IGARRL TV+ER+LE+ISF+ASD   +TV IDA  V
Sbjct: 369 LVFTDDSIDELARLAAEINSSVENIGARRLHTVLERLLEEISFAASDRAGETVTIDAALV 428

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  +G      D+  FIL
Sbjct: 429 RERVGGLAKNADLSKFIL 446


>gi|328545935|ref|YP_004306044.1| ATP-dependent protease ATPase HslU [polymorphum gilvum SL003B-26A1]
 gi|326415675|gb|ADZ72738.1| ATP-dependent protease ATPase subunit HslU [Polymorphum gilvum
           SL003B-26A1]
          Length = 434

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/434 (61%), Positives = 350/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL + +R+E++PKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLESPMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+  I++VRE+RR EV+ +
Sbjct: 63  KTEISRRLARLANAPFVKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREARRQEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG +A+  TR+ FR+KLRDG++  KEI+IEV      + +F++PG  
Sbjct: 123 AHVLAEERVLDALVGASASPATRDSFRRKLRDGDLDAKEIEIEVR-AQPQMPSFELPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASVG++N+SEL  K  GS  + + R+ V+  Y  L+ +ESD+L+D + + +++I +VEN
Sbjct: 182 GASVGVMNVSELLGKAFGSHTRTR-RVLVKDSYEILINEESDKLLDEEKIVQEAIALVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD   G  VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASGA
Sbjct: 241 AGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV LK L + DFR ILT+ E++LI QY  L+KTEG+ L+FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELKPLTRDDFRSILTEPEASLIKQYVALLKTEGVALEFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID +A +AV+LN+TV +IGARRLQTVMER+L+++SF+A D   +TV IDA YVR ++
Sbjct: 361 DDAIDEIATIAVDLNATVENIGARRLQTVMERILDEVSFTAPDHDGRTVTIDAAYVRDNV 420

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  FIL
Sbjct: 421 GELAKNIDLSRFIL 434


>gi|154246238|ref|YP_001417196.1| ATP-dependent protease ATP-binding subunit HslU [Xanthobacter
           autotrophicus Py2]
 gi|238686721|sp|A7IHP6|HSLU_XANP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|154160323|gb|ABS67539.1| heat shock protein HslVU, ATPase subunit HslU [Xanthobacter
           autotrophicus Py2]
          Length = 435

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/434 (61%), Positives = 343/434 (79%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ +AKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRHIVGQANAKRAVAIALRNRWRRQQLDDKLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE+RR +V+ +
Sbjct: 63  KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREARRKDVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AE R+LDALVG TA+  TR+ FRK+LR GE+ DKE++IEV      +  F+IPG  
Sbjct: 123 AHLAAENRVLDALVGATASPATRDAFRKRLRAGELDDKEVEIEVQAGGQGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +NL ++  K  G GR K  R++V++ +P L+ +E+D+LID D + +D+I  VEN
Sbjct: 183 GTQMGAVNLGDMLGKAFG-GRSKPRRVNVKEAHPLLLAEEADKLIDQDAIVQDAIHQVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+  +G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKIAGREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L ++DF  ILT+TE++L+ Q   LM TEG+ L  T
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLTIT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            D+++A+AD AV +NS V +IGARRLQTV+ERVL+D+SFSA D   +TVV+DAEYVR  +
Sbjct: 362 TDAVEAIADAAVEVNSNVENIGARRLQTVIERVLDDLSFSAPDRSGETVVVDAEYVRSRV 421

Query: 424 GDFPSETDMYHFIL 437
            D     D+  FIL
Sbjct: 422 ADLARNADLSRFIL 435


>gi|27375757|ref|NP_767286.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium
           japonicum USDA 110]
 gi|32129623|sp|Q89WN2|HSLU_BRAJA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27348895|dbj|BAC45911.1| heat shock chaperone [Bradyrhizobium japonicum USDA 110]
          Length = 434

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/434 (61%), Positives = 348/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLEGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIAQVRERKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+S TRE FRKKLR GE++DKEI+IE   +   +  F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANASSATRESFRKKLRAGELNDKEIEIETQSSGGGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D + +  ++I  VEN
Sbjct: 183 GAQMGAISIGDIFGKL--GGRSKTRRLTVESSHEILINEESDKLLDTEQLTLEAISAVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD   G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LM+TEG+ LD T
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMQTEGVTLDIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++IDALADVAV +NSTV +IGARRLQTVMERVL++ISF+A D   +T+ +DA++V+ H+
Sbjct: 361 DNAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFTAPDRNGETIRVDADFVQKHV 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNADLSRFIL 434


>gi|307942727|ref|ZP_07658072.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp.
           TrichSKD4]
 gi|307773523|gb|EFO32739.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp.
           TrichSKD4]
          Length = 434

 Score =  545 bits (1403), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/434 (60%), Positives = 350/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VR S+R+ V+ +
Sbjct: 63  KTEIARRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRSSKREAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+ +TR+ FRKKLR+GE+ DKEI++EV    + + +FD+PG  
Sbjct: 123 AHVLAEERVLDALVGSNASPSTRDSFRKKLREGELDDKEIEVEVR-AQAQMPSFDLPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASVG++N+S+L  K  G G+ K  R +V + Y  L+ +ESD+L+D D +  +++ +VEN
Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRTTVSESYDLLINEESDKLLDEDKIVSEAVSLVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR++ +G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILF+ASGA
Sbjct: 241 SGIVFLDEIDKICAREARSGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFVASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY  LMKTE + L FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMKTEDLTLTFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E++ID +A VAV+LN++V +IGARRLQTVMER+L++ISF+A D   +T+ I A++VR +I
Sbjct: 361 EEAIDEIAQVAVDLNASVENIGARRLQTVMERILDEISFNAPDKSGETIEITADHVRENI 420

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  FIL
Sbjct: 421 GELSKNVDLSKFIL 434


>gi|146337375|ref|YP_001202423.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp.
           ORS278]
 gi|166221463|sp|A4YJU7|HSLU_BRASO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146190181|emb|CAL74173.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone; heat shock protein [Bradyrhizobium sp.
           ORS278]
          Length = 434

 Score =  544 bits (1402), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/434 (61%), Positives = 351/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVSIALRNRWRRLQLDTGLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V  +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIHQVRERKRKDVAAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  +++ TR+ FR+KLR GE++DKEI+IE   +   +  F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D D + +++I +VEN
Sbjct: 183 GAQMGAISIGDIFGKL--GGRTKTRRVTVEASHDILIAEESDKLLDSDQLVQEAINVVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R++ +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LMKTEG+ LD T
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF+ASD   +T+ +DA YV+ HI
Sbjct: 361 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFTASDRTGETMRVDAAYVQQHI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNADLSRFIL 434


>gi|148251770|ref|YP_001236355.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp.
           BTAi1]
 gi|166221462|sp|A5E8F5|HSLU_BRASB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146403943|gb|ABQ32449.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/434 (61%), Positives = 350/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ DAKRAV+IALRNRWRR QL A LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRYIVGQADAKRAVSIALRNRWRRLQLDAGLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V  +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIVQVRERKRKDVAAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  +++ TR+ FR+KLR GE++DKEI+IE   +      F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGFPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D D + +++I +VEN
Sbjct: 183 GAQMGAISIGDIFGKL--GGRTKTRRVTVESSHDILIAEESDKLLDNDQLVQEAISVVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R++ +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LMKTEG+ LD T
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV +NSTV +IGARRLQTVMERVL++ISF+ASD   +T+ +DA YV+ HI
Sbjct: 361 DDAIDALADIAVAVNSTVENIGARRLQTVMERVLDEISFTASDRSGETMRVDAAYVQQHI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNADLSRFIL 434


>gi|298293772|ref|YP_003695711.1| heat shock protein HslVU, ATPase HslU [Starkeya novella DSM 506]
 gi|296930283|gb|ADH91092.1| heat shock protein HslVU, ATPase subunit HslU [Starkeya novella DSM
           506]
          Length = 436

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/435 (60%), Positives = 343/435 (78%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   SFSPREIVSELDRFIVGQHKAKRAVAIALRNRWRRQQLEGQLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE RR  V  +
Sbjct: 63  KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREVRRKGVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A + AEER+LDALVG TA++ TRE FRKKLRDG + DKE++IEVA +    +  F+IPG 
Sbjct: 123 AHLAAEERVLDALVGTTASAGTRESFRKKLRDGLLDDKEVEIEVASSGGQGMPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G +++ ++  K  G GR K  R++V+  +P LM +E+D+LID D + +++I+ VE
Sbjct: 183 PGAQMGAISIGDMLGKAFG-GRSKPRRVTVKDAHPLLMSEEADKLIDQDAIVQEAIRAVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 ENGIVFLDEIDKIAGSDRRGGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L + DF+ ILT+TE++L+ Q   LM TEG+ L  
Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELEALTREDFKRILTETEASLVKQSVALMGTEGVELSI 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+++A+AD+AV +N++V +IGARRLQTV+ERVL+D+SF+A D   +T+VID  YVR  
Sbjct: 362 TEDAVEAIADIAVQVNASVENIGARRLQTVIERVLDDLSFNAPDRSGETIVIDGAYVRER 421

Query: 423 IGDFPSETDMYHFIL 437
           + D    TD+  +IL
Sbjct: 422 VADLAGNTDLSRYIL 436


>gi|92115752|ref|YP_575481.1| ATP-dependent protease ATP-binding subunit HslU [Nitrobacter
           hamburgensis X14]
 gi|123387265|sp|Q1QRX6|HSLU_NITHX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91798646|gb|ABE61021.1| heat shock protein HslVU, ATPase subunit HslU [Nitrobacter
           hamburgensis X14]
          Length = 433

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/434 (62%), Positives = 347/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   HFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+VAI   RE +R +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A++ TR+ FR+KLR G+++DKEI+IE   +S     F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANASAATRDSFRRKLRAGDLNDKEIEIET-QSSGGAPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA VG +++ ++F K MG GR K  R++V   Y  L+ +ESD+L+D D + +++I  VEN
Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVVDSYEILVNEESDKLLDSDQLTQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY  LM+TEG+ LD T
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYVALMQTEGVTLDIT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV +NSTV +IGARRLQTVMERVL+DISFSA D   +TV IDA YV+ HI
Sbjct: 360 DDAIDALADIAVAVNSTVENIGARRLQTVMERVLDDISFSAPDRNGETVRIDAGYVQKHI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|312114749|ref|YP_004012345.1| heat shock protein HslVU, ATPase HslU [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219878|gb|ADP71246.1| heat shock protein HslVU, ATPase subunit HslU [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 437

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 341/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL  D+R+E++PKNIL++GPTGVG
Sbjct: 5   NFSPREIVSELDRHIVGQHAAKRAVAIALRNRWRRQQLKDDMREEVLPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+V+QIIRDLV+ AI +VRE++R EVR +
Sbjct: 65  KTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVDQIIRDLVESAIGLVRETKRKEVRAK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+L ALVG+ A+  T++ FRKKLRDGE+ +KEI+++VADT   +  F+IPG  
Sbjct: 125 AHLLAEERVLMALVGQHASPATKDAFRKKLRDGELDEKEIEVQVADTGGGVGGFEIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+SV ++NL+++  K  G  R K  R+SV+  Y  L+ DESD+L+D + V +D+I  VE 
Sbjct: 185 GSSVSMMNLNDVLGKAFGQ-RTKTRRLSVRDSYEVLINDESDKLLDNEAVVQDAITAVEE 243

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA
Sbjct: 244 NGIVFLDEIDKITARSERLGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 303

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+D+LPE+QGR P+RV L++L   DFR IL + +S+LI Q   LM TEG+ L+F+
Sbjct: 304 FHVAKPSDMLPELQGRLPIRVELQALTGDDFRRILREPKSSLIKQSVALMATEGVELEFS 363

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDA+ADVAV +N+ V +IGARRL TVMERVL++ISF A+D      VIDA YV+  +
Sbjct: 364 EDAIDAIADVAVEVNANVENIGARRLSTVMERVLDEISFEAADKARTKFVIDATYVKTQV 423

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 424 GDLAKNADLSKFIL 437


>gi|254470703|ref|ZP_05084106.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp.
           JE062]
 gi|211959845|gb|EEA95042.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp.
           JE062]
          Length = 434

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 344/434 (79%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL  +LR+E+ PKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDEELREEVQPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQIIRDLV+ AI +VRE  R +V  +
Sbjct: 63  KTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIIRDLVESAIALVREQSRKDVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+  TR+ FRKKLR+G++ ++EI+IEV   +  + +FDIPG  
Sbjct: 123 AHVLAEERVLDALVGANASPATRDTFRKKLREGDLDEREIEIEVR-ANPQMPSFDIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+SVG++N+S++  K  G G+ K  R +V+  +  L+ +ESD+L+D + + +++I +VEN
Sbjct: 182 GSSVGVMNISDMLGKAFG-GQTKPKRTNVKDSHKVLLAEESDKLLDEEKIVQEAIALVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI A+D  NG  VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASGA
Sbjct: 241 SGIVFLDEIDKICAKDGRNGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV LK+L K DF  ILTDTE++LI QY  LM TE + ++FT
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELKALTKEDFVKILTDTEASLIKQYVALMGTESVTIEFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID +A +AV+LN+TV +IGARRLQTVMERVL++ISF+A D   + V IDA YV+ ++
Sbjct: 361 DDAIDEIATIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKSGEQVTIDAAYVKSNV 420

Query: 424 GDFPSETDMYHFIL 437
            +     D+  FIL
Sbjct: 421 SELAKNVDLSQFIL 434


>gi|209966551|ref|YP_002299466.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Rhodospirillum centenum SW]
 gi|238065802|sp|B6IWI0|HSLU_RHOCS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|209960017|gb|ACJ00654.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Rhodospirillum centenum SW]
          Length = 437

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/436 (61%), Positives = 346/436 (79%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTGVG
Sbjct: 3   SFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLPEGLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDLV++AI + RE  R EV  +
Sbjct: 63  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLTRERLRKEVASK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183
           A + AE+R+L+ALVG  A+  TR+ FRK LR+G+++D+EI+I+V DTS   +  FD+PG 
Sbjct: 123 AELRAEDRVLEALVGANASGETRQKFRKMLREGQLNDREIEIQVQDTSVQGLPTFDVPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G++NL ++F K +G GR K  RMSV + Y  LM +ESD+L+D + V  ++IQ VE
Sbjct: 183 PGAQMGMINLGDIFGKALG-GRTKVRRMSVSESYDVLMAEESDKLLDQEKVVSEAIQSVE 241

Query: 243 NYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             GIVFLDE DKI AR +   G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIAS
Sbjct: 242 QNGIVFLDEIDKITARSEVRGGADVSREGVQRDLLPLIEGTTVNTKHGPVKTDHVLFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV LK+L++ DFR ILT+ E++LI QYK L+ TEG+ LD
Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELKALSQEDFRRILTEPEASLIKQYKALLATEGMTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D ID LA +A ++N +V +IGARRL TV+ER+LE+ISF+ASD   ++V IDA YVR 
Sbjct: 362 FTDDGIDELARLAADINRSVENIGARRLHTVLERLLEEISFTASDRSGESVTIDAAYVRG 421

Query: 422 HIGDFPSETDMYHFIL 437
            +      TD+  FIL
Sbjct: 422 QLQGLAQNTDLSKFIL 437


>gi|75674328|ref|YP_316749.1| ATP-dependent protease ATP-binding subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|123759422|sp|Q3SWE4|HSLU_NITWN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|74419198|gb|ABA03397.1| Heat shock protein HslU [Nitrobacter winogradskyi Nb-255]
          Length = 433

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DISPREIVSELDRFIVGQADAKRAVSIALRNRWRRQQLTGPLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+K+E TKFTE+GYVGR+VEQI+RD+V+VAIN  RE +R +V+ +
Sbjct: 63  KTEIARRLAKLANAPFLKIEATKFTEVGYVGRDVEQIVRDIVEVAINQTRERKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A++ TR+ FRK+LR GE++DKEI+IE   TS     F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANASAATRDSFRKRLRSGELNDKEIEIET-QTSGGGPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA VG +++ ++F K MG GR K  R++V   Y  L+ +ESD+L+D D + +++I  VEN
Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVSDSYEILINEESDKLLDSDQLTQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TEG++LDFT
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRDDLRRILTEPEASLIKQYVALMDTEGVVLDFT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D   +TV IDA YV+ +I
Sbjct: 360 DDAVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRNGETVRIDAGYVQKNI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|254504755|ref|ZP_05116906.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii
           DFL-11]
 gi|222440826|gb|EEE47505.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii
           DFL-11]
          Length = 434

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 344/434 (79%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VRE +R+ V+ +
Sbjct: 63  KTEISRRLAKLARAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREEKRESVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+  TRE FR KLRDG++ DKEI++EV    + + +FD+PG  
Sbjct: 123 AHVLAEERVLDALVGANASPATRESFRTKLRDGDMDDKEIEVEVP-AQAQMPSFDLPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASVG++N+S+L  K  G G+ K  R++V+  +  L+  ESD+L+D D +  ++I +VEN
Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRINVRDSHQLLVNAESDKLLDEDKIVEEAISLVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA
Sbjct: 241 SGIVFLDEIDKICAREGRAGGDVSREGVQRDLLPLIEGTVVSTKHGPVRTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY  LM+TEG+ L FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMETEGLKLSFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           EDSI+ +A VAV+LN +V +IGARRLQTVMER+L++ISF+A D   + V I AE+V  +I
Sbjct: 361 EDSIEEIASVAVDLNGSVENIGARRLQTVMERILDEISFTAPDRSGEEVEITAEFVHDNI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNVDLSKFIL 434


>gi|90421826|ref|YP_530196.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisB18]
 gi|123275695|sp|Q21CK9|HSLU_RHOPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|90103840|gb|ABD85877.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisB18]
          Length = 434

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/434 (60%), Positives = 347/434 (79%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQHDAKRAVSIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V  +
Sbjct: 63  KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAISQVREKKRKDVEAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AEER+LDALVG  +++ TR+ FRKKLR GE++DKEI++E   T      F+IPG  
Sbjct: 123 AQIAAEERVLDALVGANSSATTRDSFRKKLRAGELNDKEIEVETQSTGGGSPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR K  R++V+  +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 183 GAQMGAISLGDIFGK-MG-GRTKTRRLTVEDSHELLVNEEADKLLDSDQLVQEAINAVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  L++TEG+ L+ T
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELSALTRDDMRRILTEPEASLIKQYVALLQTEGVTLEIT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++IDALADVAV +NS+V +IGARRLQTVMERVL++ISF+A D   +T+ +DA YV+ H+
Sbjct: 361 DEAIDALADVAVAVNSSVENIGARRLQTVMERVLDEISFTAPDRDGETIQVDAAYVQKHV 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNADLSRFIL 434


>gi|323138813|ref|ZP_08073877.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp.
           ATCC 49242]
 gi|322395961|gb|EFX98498.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp.
           ATCC 49242]
          Length = 434

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/434 (59%), Positives = 342/434 (78%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRLQLEGQMREEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDL++VA+ +V+E RR +V+ +
Sbjct: 63  KTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLIEVALVMVKERRRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+LDALVG  ++  TRE FRK+LRDGE+ DKEI+IE+A +      F++P   
Sbjct: 123 AQQAAEERVLDALVGPASSPATRETFRKRLRDGELDDKEIEIELAQSGGSTPMFELPNMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASV   +L ++F K +  G+ +K  ++V++ +  L+ +ESD+LID +   R++I  VEN
Sbjct: 183 GASVSAFSLGDIFGKALQRGKPRK--LTVKEAHDPLVAEESDKLIDQEASVREAIHEVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA
Sbjct: 241 NGIVFIDEMDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L SLN+ DFR ILT+TE+ L  QY  LM TEG+ L+F+
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELASLNEEDFRRILTETEACLTKQYVALMGTEGVTLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             +I+A+A VAV +N++V +IGARRLQTVMERVL+DISFSASD   +TVV+D +YV  HI
Sbjct: 361 PSAIEAIAKVAVQVNTSVENIGARRLQTVMERVLDDISFSASDRAGETVVVDGDYVERHI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNRDLSRFIL 434


>gi|158421845|ref|YP_001523137.1| ATP-dependent protease ATP-binding subunit HslU [Azorhizobium
           caulinodans ORS 571]
 gi|172048021|sp|A8IIZ0|HSLU_AZOC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|158328734|dbj|BAF86219.1| heat shock protein [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/434 (60%), Positives = 342/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRHIVGQGKAKRAVAIALRNRWRRQQLQGHMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R +V+ +
Sbjct: 63  KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREQKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  ++S TR+ FRKKLR GE+ +KE++IEV   +  +  F+IPG  
Sbjct: 123 AHLAAEERVLDALVGANSSSTTRDAFRKKLRAGELDEKEVEIEVQAGAQGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++  K  G GR K  R+ V+  +P L+ +E+D+LID +   +++I  VEN
Sbjct: 183 GAQMGAVSLGDMLGKAFG-GRTKARRVLVKDAHPLLLTEEADKLIDQEATTQEAIYAVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+  +G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKIAQREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L ++DF  ILT+TE++L+ Q   LM TEG+ LD +
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLDIS 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            D+++A+ADVAV +NSTV +IGARRLQTVMERVL+++SF+A D   +TV IDA YVR  +
Sbjct: 362 PDAVEAIADVAVEVNSTVENIGARRLQTVMERVLDELSFTAPDRSGETVSIDAAYVRERV 421

Query: 424 GDFPSETDMYHFIL 437
            D     D+  FIL
Sbjct: 422 ADLAKNADLSRFIL 435


>gi|192288739|ref|YP_001989344.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris TIE-1]
 gi|238692578|sp|B3Q8B9|HSLU_RHOPT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|192282488|gb|ACE98868.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris TIE-1]
          Length = 433

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE     S    F+IPG  
Sbjct: 123 AQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIET-QAGSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR KK R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ LDF+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFQVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|23014725|ref|ZP_00054527.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 442

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/437 (60%), Positives = 344/437 (78%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183
            INAEER+LDALVG+TA + TR+ FRK LR+G +  KE++I+VADT  + + +FDIPG  
Sbjct: 126 EINAEERLLDALVGETAAAETRQKFRKMLREGALDSKEVEIQVADTGGAGLPSFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NLS++  K +G GR K  ++ V +    L  +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLSDMLGKALGGGRTKPRKLPVPEALAALTAEESDKLLDQDKVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVF+DE DKI AR S + +G  VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS
Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV LK+L++ D   ILT+ E++L+ QY+ L+ TE +ILD
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVILD 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           F   S++A+AD+A  +NSTV +IGARRLQTVMER+LEDISF+A D    T V I AE VR
Sbjct: 366 FEPGSVEAIADLAAEINSTVENIGARRLQTVMERLLEDISFTAPDQPPGTKVTITAEMVR 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G      D+  FIL
Sbjct: 426 DRVGALAKTADLAKFIL 442


>gi|39933383|ref|NP_945659.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris CGA009]
 gi|62286823|sp|Q6ND03|HSLU_RHOPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|39653008|emb|CAE25750.1| heat shock protein HslU, proteasome-related ATPase subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 433

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE     S    F+IPG  
Sbjct: 123 AQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIET-QAGSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR KK R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ LDF+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|85714082|ref|ZP_01045071.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
 gi|85699208|gb|EAQ37076.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
          Length = 433

 Score =  538 bits (1386), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 346/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   HFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI   RE +R EV+ +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKEVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  +++ TR+ FRK+LR GE++DKEI+IE   +S     F+IPG  
Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRKRLRAGELNDKEIEIET-QSSGGAPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA VG +++ ++F K MG GR K  R++V   +  L+ +ESD+L+D D +  ++I  VEN
Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVSDSHEILINEESDKLLDSDQLTLEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 DGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY  LM TEG+ LD T
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYIALMHTEGVTLDIT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D + +TV ID+ YV+ HI
Sbjct: 360 DDAVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRKGETVRIDSGYVQKHI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|115522400|ref|YP_779311.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisA53]
 gi|122297922|sp|Q07UQ3|HSLU_RHOP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115516347|gb|ABJ04331.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisA53]
          Length = 433

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/434 (61%), Positives = 346/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQSDAKRAVSIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG +A+  TR+ FRKKLR GE++DKEI++E    SS    F+IPG  
Sbjct: 123 AQLAAEERVLDALVGASASPATRDSFRKKLRAGELNDKEIEVET-QASSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR K  R++V   +  L+ +E+D+L+D D +  ++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKTRRLTVADSHEILVNEEADKLLDSDQLTIEAINAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E +LI QY  L+ TEG+ L+F 
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEVSLIKQYVALLGTEGVTLEFG 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISFSA D   +T+ IDAE+V+ H+
Sbjct: 360 DDAIDALADVAVQVNSTVENIGARRLQTVMERVLDEISFSAPDRSGETIRIDAEFVQKHV 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|118590481|ref|ZP_01547883.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
 gi|118436944|gb|EAV43583.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
          Length = 434

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/434 (60%), Positives = 344/434 (79%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLQGQMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VR+ +R+ V+ +
Sbjct: 63  KTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRDQKREAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVGK A+  TR+ FR KLR+GE+ DKEI++EV    + + +FD+PG  
Sbjct: 123 AHMLAEERVLDALVGKNASPATRDSFRTKLRNGEMDDKEIEVEVR-AQAQMPSFDLPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASVG++N+S+L  K  G G+ K  R +V   Y  L+ +ESD+L+D D V  ++I +VEN
Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRTTVGDSYQMLINEESDKLLDDDKVVEEAISLVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA
Sbjct: 241 SGIVFLDEIDKICAREGRAGADVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L+K DFR ILT+ E++LI QY  L+ TE + L FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALDKDDFRAILTEPEASLIKQYVALLDTEKVKLSFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+ID +A +AV+LN++V +IGARRLQTVMER+L+++SF+A D   + V I  ++VR +I
Sbjct: 361 EDAIDEIATIAVDLNASVENIGARRLQTVMERILDEVSFTAPDRPGEEVEITGKFVRDNI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNVDLSKFIL 434


>gi|188579892|ref|YP_001923337.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           populi BJ001]
 gi|238692900|sp|B1ZL59|HSLU_METPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|179343390|gb|ACB78802.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           populi BJ001]
          Length = 437

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ +
Sbjct: 63  KTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A   AE RILDALVG TA+  TRE FRKKLR+ E+ DKE++IE+A +    +  F+IPG 
Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G +N+S++  K +G  R K  R++V   Y  L+ +ESD+L+D D + R++I+ VE
Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG
Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LDF
Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR  
Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAGYVRER 422

Query: 423 IGDFPSETDMYHFIL 437
           + D  + TD+  FIL
Sbjct: 423 VADLAANTDLSRFIL 437


>gi|254295470|ref|YP_003061493.1| heat shock protein HslVU, ATPase HslU [Hirschia baltica ATCC 49814]
 gi|254044001|gb|ACT60796.1| heat shock protein HslVU, ATPase subunit HslU [Hirschia baltica
           ATCC 49814]
          Length = 435

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/434 (59%), Positives = 339/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   EFSPREIVSELDRFIVGQADAKRAVALALRNRWRRKQLSDDLREEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ +I +V+E +  +VR +
Sbjct: 63  KTEISRRLAKLAQAPFIKVEATKFTEVGYVGRDVEQIIRDLVEASIAMVKEEKSKDVRAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE R+LDALVG  A  +TRE F+ KLR G + DKEI+I+++D  S + + DIPG  
Sbjct: 123 AESAAESRVLDALVGPDAKESTRESFQTKLRSGALDDKEIEIDLSDNGSPMQSMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GAS+G+LNL +L  K  G GR K ++M+V+  Y  L+ DESD+L+D ++V RD+I++VE 
Sbjct: 183 GASMGMLNLGDLLGKGFG-GRTKTVKMTVKDAYRPLIDDESDKLVDQESVVRDAIKLVEE 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+  R    G GVSREGVQRDLLPL+EG++VSTK+G++ TD+ILFIASGA
Sbjct: 242 EGIVFLDEIDKVATRQEAGGAGVSREGVQRDLLPLIEGTTVSTKHGAVKTDYILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT+ E++LI QY  L+  EG+ ++F 
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELQGLTHEDFKRILTEPEASLIKQYIALIGAEGMTIEFD 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E SIDA+A++AV +N TV +IGARRL TV+ER+LE+ISF+A D   ++ VI A+YVR  +
Sbjct: 362 ESSIDAIAEIAVQVNDTVENIGARRLHTVLERLLEEISFTAPDRSGESFVITADYVREKV 421

Query: 424 GDFPSETDMYHFIL 437
           G +    D+  +IL
Sbjct: 422 GGYAGNADLSKYIL 435


>gi|316931713|ref|YP_004106695.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris DX-1]
 gi|315599427|gb|ADU41962.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris DX-1]
          Length = 433

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/434 (61%), Positives = 345/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE     +     +IPG  
Sbjct: 123 AQIAAEERVLDALVGPGSGPATRDSFRKKLRSGELNDKEIEIET-QAGAGSPMLEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR K  R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAISLGDIFGK-MG-GRTKTRRLTVADSHEILVNEEADKLLDNDQLVQEAITAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILF+ASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFVASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ L+FT
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLEFT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|218528690|ref|YP_002419506.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           chloromethanicum CM4]
 gi|240137220|ref|YP_002961689.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens AM1]
 gi|254559232|ref|YP_003066327.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens DM4]
 gi|254802310|sp|B7KZ48|HSLU_METC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218520993|gb|ACK81578.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           chloromethanicum CM4]
 gi|240007186|gb|ACS38412.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens AM1]
 gi|254266510|emb|CAX22274.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens DM4]
          Length = 437

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ +
Sbjct: 63  KTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A   AE RILDALVG TA+  TRE FRKKLR  E+ DKE++IE+A + S  +  F+IPG 
Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGMPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G +N+S++  K +G  R K  R++V + Y  L+ +ESD+L+D D + R++I+ VE
Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG
Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LDF
Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR  
Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRDR 422

Query: 423 IGDFPSETDMYHFIL 437
           + D  +  D+  FIL
Sbjct: 423 VEDLAANADLSRFIL 437


>gi|163850087|ref|YP_001638130.1| ATP-dependent protease ATP-binding subunit [Methylobacterium
           extorquens PA1]
 gi|238687371|sp|A9W0F3|HSLU_METEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163661692|gb|ABY29059.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           extorquens PA1]
          Length = 437

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ +
Sbjct: 63  KTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A   AE RILDALVG TA+  TRE FRKKLR  E+ DKE++IE+A + S  +  F+IPG 
Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGLPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G +N+S++  K +G  R K  R++V + Y  L+ +ESD+L+D D + R++I+ VE
Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG
Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LDF
Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR  
Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRDR 422

Query: 423 IGDFPSETDMYHFIL 437
           + D  +  D+  FIL
Sbjct: 423 VEDLAANADLSRFIL 437


>gi|300024848|ref|YP_003757459.1| heat shock protein HslVU, ATPase HslU [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526669|gb|ADJ25138.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 435

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 340/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYI+GQQDAKRAVAIALRNRWRRQQL  +LRDE++PKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIVGQQDAKRAVAIALRNRWRRQQLTGELRDEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ IIRDLV+V I +V+  +R +VR +
Sbjct: 63  KTEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIIRDLVEVGIALVKNVKRQDVRAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A  +AEER++DALVG  ++  TRE FRKKLR+ E++DKEIDI VADT+  +  FD+PGGA
Sbjct: 123 AEKSAEERVIDALVGSGSSPATRESFRKKLRNNELNDKEIDILVADTAPQLPMFDLPGGA 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S+  +NL ++  K +G  R K  R++V+  +  L+ DESD+LID D +  +++  V+N G
Sbjct: 183 SMSTINLGDMLGKALGQ-RTKPRRVTVKDSFEILIADESDKLIDNDQITAEAVAAVQNDG 241

Query: 246 IVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           IVFLDE DKI +R  G   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA
Sbjct: 242 IVFLDEIDKICSRGDGTRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + D + ILT+  ++LI QY  LM+TEG+ L+F 
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTRDDLKRILTEPHASLIKQYVALMETEGVTLEFK 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            ++IDA+AD AV +NSTV +IGARRLQTV+ERVL+DISF ASD   +T+ ID  YV   +
Sbjct: 362 PEAIDAIADAAVEVNSTVENIGARRLQTVLERVLDDISFEASDRNGQTLAIDGAYVTQRV 421

Query: 424 GDFPSETDMYHFIL 437
           G      D+  FIL
Sbjct: 422 GQLSKNADLSRFIL 435


>gi|163797095|ref|ZP_02191050.1| Heat shock protein HslU [alpha proteobacterium BAL199]
 gi|159177611|gb|EDP62164.1| Heat shock protein HslU [alpha proteobacterium BAL199]
          Length = 437

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/435 (58%), Positives = 343/435 (78%), Gaps = 5/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRR+QLP  LR E++PKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRRQLPEALRQEILPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+VE I+RDLV+VAI++ RE  R EV  +A
Sbjct: 64  TEIARRLARLAEAPFIKIEATKFTEVGYVGRDVESIVRDLVEVAISMTRERMRREVHAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN--FDIPG- 183
            + AEER++DALVG +A++ TR+ FRK LR+G ++++EI+IE++          F+IPG 
Sbjct: 124 ELAAEERVIDALVGTSASAETRQKFRKMLREGALAEREIEIELSGGGGPSGMPSFEIPGM 183

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G+++LSE+  K  G G+K+K RMSV   Y  L+++E+D+L+D + V R++I+ VE
Sbjct: 184 PGAQMGMVDLSEMLGKAFG-GQKRKRRMSVSDSYDLLVKEEADKLLDQELVTRNAIETVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   +   G  VSREGVQRDLLPL+EG++V+TK+G + TD +LFIASG
Sbjct: 243 QNGIVFLDEIDKIARSEQRGGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDFVLFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH ++P+DLLPE+QGR P+RV L++L ++DFR ILT+ E++L+ QY  L+ TEG+ L+F
Sbjct: 303 AFHTAKPSDLLPELQGRLPIRVELQALTRNDFRRILTEPEASLVTQYVALLGTEGVTLEF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED+IDALAD+AV +N TV +IGARRL TV+E++LE+ISF+ASD   +++VIDAE VR  
Sbjct: 363 AEDAIDALADLAVEINRTVENIGARRLHTVLEKLLEEISFTASDRTGESIVIDAELVRTR 422

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  FIL
Sbjct: 423 VGELAKNADLSRFIL 437


>gi|304392730|ref|ZP_07374670.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130]
 gi|303295360|gb|EFL89720.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130]
          Length = 434

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/434 (59%), Positives = 349/434 (80%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIGQ DAKRAVA+A+RNRWRRQQL + +R+E+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRFIIGQNDAKRAVAVAMRNRWRRQQLESPMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VE IIRDLV++ I +VRE +R++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVESIIRDLVEIGIGLVREKKREQVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AE+R+LDALVG TA+ +TR  F KKLR+GE+ +KEI++EVADT +    F+IPG  
Sbjct: 123 AHIAAEDRVLDALVGSTASPSTRASFMKKLREGELDEKEIEVEVADTGAP-GGFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G+++L E+ SK MG  + KK + +V++ Y  L+ +ESD+L+D + V  ++++ V+N
Sbjct: 182 PGQGGMIDLGEIMSK-MGGKKTKKRKTTVKESYELLIAEESDKLLDDEQVVAEALESVQN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
             IVFLDE DKI   ++  G  VSREGVQRDLLPLVEG++V+TKYG + TDHILF+ASGA
Sbjct: 241 DAIVFLDEIDKIAVSENVRGGSVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFVASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  L+ TE + ++FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKDDFVRILTETEASLIKQYIALLGTEDMTVEFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALAD+AV LNS+V +IGARRLQTVME+VL+++SF A D    TV +DAE+VR ++
Sbjct: 361 EDAIDALADIAVELNSSVENIGARRLQTVMEKVLDEVSFEAPDRSGDTVTVDAEFVRKNV 420

Query: 424 GDFPSETDMYHFIL 437
           G+  ++TD+  +IL
Sbjct: 421 GELAADTDLSRYIL 434


>gi|91974898|ref|YP_567557.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisB5]
 gi|123749455|sp|Q13E33|HSLU_RHOPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91681354|gb|ABE37656.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisB5]
          Length = 433

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/434 (60%), Positives = 348/434 (80%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGILREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVRERKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AEER+LDALVG  ++  TR+ FR+KLR G+++DKEI++E    SS    F+IPG  
Sbjct: 123 AQIAAEERVLDALVGPGSSPATRDSFRRKLRAGDLNDKEIEVET-QASSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +++ ++F K MG GR K  R++V   +  L+ +E+D+L+D D + +++I +VEN
Sbjct: 182 GGQIGAISIGDIFGK-MG-GRTKTRRLTVADSHDILINEEADKLLDNDQLVQEAINVVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++V+TK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  L++TEG+ L+F+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALTRDDMRRILTEPEASLIKQYIALLQTEGVTLEFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T+ IDA+YV+ ++
Sbjct: 360 DDAIDALADVAVGVNSTVENIGARRLQTVMERVLDEISFVAPDRGGETIRIDADYVQKNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|254419306|ref|ZP_05033030.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp.
           BAL3]
 gi|196185483|gb|EDX80459.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp.
           BAL3]
          Length = 433

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/432 (60%), Positives = 340/432 (78%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPREIVSELDRYI+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLSPREIVSELDRYIVGQDDAKRAVAVALRNRWRRKRVPEDLRDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR EVR +
Sbjct: 63  KTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDRRRGEVRAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+RILDALVG  A   TR+ FRKKLR G++ DKEI+I +ADT+S I   DIPGG 
Sbjct: 123 AEGAAEDRILDALVGPGAGQATRDSFRKKLRAGDLDDKEIEIALADTASPIQGLDIPGGG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           +VG+LNLSE+  K MG GR K ++++V+     L+ +E D+L+D D++ ++++ + EN G
Sbjct: 183 AVGLLNLSEMLGK-MGGGRTKTVKLTVRDATAPLIAEEGDKLLDQDSLTKEALILAENEG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ AR   +G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAFH
Sbjct: 242 IVFLDEIDKVAARQGASGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TE + L FT+D
Sbjct: 302 VAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEDVTLTFTDD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +I+ALAD AV  NS V +IGARRLQTV+ERVLE+ SF ASDL  +TV  D   VR  +  
Sbjct: 362 AIEALADAAVAANSAVENIGARRLQTVLERVLEETSFKASDLAGQTVNFDGAAVRDKLSL 421

Query: 426 FPSETDMYHFIL 437
              + D+  FIL
Sbjct: 422 LTKDVDLSRFIL 433


>gi|83313636|ref|YP_423900.1| ATP-dependent protease ATP-binding subunit HslU [Magnetospirillum
           magneticum AMB-1]
 gi|82948477|dbj|BAE53341.1| ATP-dependent protease HslVU [Magnetospirillum magneticum AMB-1]
          Length = 442

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/437 (59%), Positives = 340/437 (77%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183
            I AEER+LDALVG+TA + TR+ FRK LR+G +  KE++I+VA+T  + +  FDIPG  
Sbjct: 126 EIAAEERLLDALVGETAGTETRQKFRKMLREGALDAKEVEIQVAETGGAGLPTFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NL ++  K +G GR +  ++ V +    L  +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLGDMLGKALGGGRTRPRKLPVPEALDVLTAEESDKLLDQDKVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVF+DE DKI AR S + +G  VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS
Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV LK+L++ D   ILT+ E++L+ QY+ L+ TE + L 
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVTLT 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F   S+DA+AD+A  +N+TV +IGARRLQTVMER+LE+ISF+A D     TV I AE VR
Sbjct: 366 FEPGSVDAIADLAAEINATVENIGARRLQTVMERLLEEISFTAPDQPPGTTVTITAEMVR 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G+     D+  FIL
Sbjct: 426 ERVGELAKTADLAKFIL 442


>gi|182677250|ref|YP_001831396.1| ATP-dependent protease ATP-binding subunit HslU [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|238691214|sp|B2ICL8|HSLU_BEII9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|182633133|gb|ACB93907.1| heat shock protein HslVU, ATPase subunit HslU [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 435

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/434 (58%), Positives = 339/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRR +L   +R+E++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRYIVGQNDAKRAVAIALRNRWRRLKLEGAMREEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+ AI +V+  +R  +  +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVETAIVMVKAEKRKSLEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  + EER+LDALVG  A   TR+ FRKKLRDG++ DKEI+IE+A  + ++  FD+P   
Sbjct: 123 AHQSVEERLLDALVGANAAQTTRDSFRKKLRDGDLEDKEIEIELAQATGNLPMFDLPNMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA+VG +++ ++F+K +G   K++ R +V++    L+ +ES++L+D + +   +I  VEN
Sbjct: 183 GAAVGAISIGDIFAKSLGRSTKRR-RSTVKEAREPLLAEESEKLMDQEQIIAQAIHSVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+SV+TK+G+I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKICAREGRGGADVSREGVQRDLLPLIEGTSVATKHGTIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L  LN+ DFR ILT+TE +LI QY+ L+ TEG+ L FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELLPLNEEDFRRILTETEVSLIKQYEALLATEGVNLVFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            +++ +LA VAV +NS+V +IGARRLQTVMERVL+++S++A D   +T+ IDA YV  +I
Sbjct: 362 PEAVSSLAKVAVQVNSSVENIGARRLQTVMERVLDEVSYTAPDRSGQTITIDAAYVEKNI 421

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 422 GDLAKNTDLSRFIL 435


>gi|114571522|ref|YP_758202.1| ATP-dependent protease ATP-binding subunit HslU [Maricaulis maris
           MCS10]
 gi|122314939|sp|Q0AKC9|HSLU_MARMM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114341984|gb|ABI67264.1| heat shock protein HslVU, ATPase subunit HslU [Maricaulis maris
           MCS10]
          Length = 435

 Score =  525 bits (1351), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/434 (57%), Positives = 339/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +F+PREIVSELDR+I+GQ DAK+AVAIALRNRWRR+QL   L +E+ PKNIL++GPTGVG
Sbjct: 3   DFTPREIVSELDRFIVGQADAKKAVAIALRNRWRRRQLDDALAEEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI RDLV++AINIVRE++R++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIARDLVEIAINIVRETKREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE R++DALVG  ++  TRE FRK+L  GE+ DK+++I++AD+ + +   DIPG  
Sbjct: 123 AHAAAENRVVDALVGPNSSEATRESFRKRLLAGELDDKDVEIQLADSGAGMQMLDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G++N+ ++  K  G  + K +RM V+  Y  L+ +E+D+L+D   +  D+I++ EN
Sbjct: 183 TGGAGVINIGDILGKGFGQ-KTKTVRMKVKDAYEPLINEEADKLLDDSQITADAIKLAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+GSI TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARSDARGGDVSREGVQRDLLPLIEGTTVATKHGSIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+D+LPE+QGR P+RV L +L+++D + IL + E++LI QY  L+ TEG+ LDFT
Sbjct: 302 FHVAKPSDMLPELQGRLPIRVELSALSEADLKRILVEPEASLIKQYVGLLATEGVSLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALA +A + N++V +IGARRLQTVME+++EDISF+ASD   + + IDA+YV  H+
Sbjct: 362 DDAIDALAKLAADFNASVENIGARRLQTVMEKLVEDISFTASDRSGQEITIDADYVAEHV 421

Query: 424 GDFPSETDMYHFIL 437
           G      D+  FIL
Sbjct: 422 GTLAKNADLSKFIL 435


>gi|86747529|ref|YP_484025.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris HaA2]
 gi|123099259|sp|Q2J346|HSLU_RHOP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|86570557|gb|ABD05114.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris HaA2]
          Length = 433

 Score =  525 bits (1351), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/434 (60%), Positives = 344/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AEER+LDALVG  ++  TR+ FR+KLR GE++DKEI+IE          F+IPG  
Sbjct: 123 AQIAAEERVLDALVGPGSSPATRDSFRRKLRTGELNDKEIEIET-QAGGGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +++ ++F K MG GR K  R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GGQIGAISIGDIFGK-MG-GRTKTRRLTVVDSHDILVNEEADKLLDNDQLVQEAINAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  L++TEG+ L+F 
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALLQTEGVTLEFG 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF A D   +T+ IDA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFGAPDRGGETIRIDADYVQKNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|170749489|ref|YP_001755749.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688891|sp|B1M5N6|HSLU_METRJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170656011|gb|ACB25066.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           radiotolerans JCM 2831]
          Length = 437

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/435 (59%), Positives = 342/435 (78%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRQQLTGPLREEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + R+++R+ V+ +
Sbjct: 63  KTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGLTRQAKREGVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183
           A   AE RILDALVG TA+  TR+ FR+KLR+ E+ DKE+++E+  ++ + +  F+IPG 
Sbjct: 123 AEAAAENRILDALVGPTASQATRDSFRRKLRNSELDDKEVELELTSSAPAGMPMFEIPGV 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G +N+ ++  K +G  R K  R+ V+  Y  LM +ESD+L+D + + R++I+ VE
Sbjct: 183 PGASMGAINIGDMLGKALGGQRGKPRRILVRDAYAPLMAEESDKLVDDEALVREAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR+  +   VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASG
Sbjct: 243 NNGIVFLDEIDKICAREGRSSGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+PADLLPE+QGR P+RV L+ L   DF+ ILT TE++L+ Q   LM+TEG+ L F
Sbjct: 303 AFHVSKPADLLPELQGRLPIRVELQPLTVDDFKQILTATEASLLKQTVALMETEGVTLTF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++DALA VAV +NS+V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR  
Sbjct: 363 TDDAVDALARVAVEVNSSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRER 422

Query: 423 IGDFPSETDMYHFIL 437
           + D  S  D+  FIL
Sbjct: 423 VQDLASNADLSRFIL 437


>gi|220925310|ref|YP_002500612.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           nodulans ORS 2060]
 gi|254802311|sp|B8IMW6|HSLU_METNO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219949917|gb|ACL60309.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           nodulans ORS 2060]
          Length = 437

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/435 (59%), Positives = 338/435 (77%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLQGPLREEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R  V+ +
Sbjct: 63  KTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG- 183
           A   AE RILDALVG TA+  TR+ FR++LR GE+ DKE+++E+A +++  +  F+IPG 
Sbjct: 123 AEAAAEARILDALVGPTASQATRDSFRRRLRAGELDDKEVELELAGSATAGLPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G +NL ++  K +G  R +  R++V+  +  LM +ESD+L+D DT+ +++I+ VE
Sbjct: 183 PGAAMGAINLGDMLGKALGGQRGRPRRITVRDAHAPLMTEESDKLLDQDTIIQEAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASG
Sbjct: 243 DNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKYGPVKTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L  L   DFR ILT+TE++L+ Q   LM TEG+ + F
Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVTVTF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++DALA VAV++NS+V +IGARRLQTV+ERVL++ISF+A D   + V IDA YVR  
Sbjct: 363 TDDAVDALARVAVDVNSSVENIGARRLQTVLERVLDEISFAAPDRSGEIVTIDAAYVRER 422

Query: 423 IGDFPSETDMYHFIL 437
           +       D+  FIL
Sbjct: 423 VESLAQNADLSRFIL 437


>gi|299133207|ref|ZP_07026402.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2]
 gi|298593344|gb|EFI53544.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2]
          Length = 433

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/434 (61%), Positives = 341/434 (78%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLQLTGSLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE +R +V  +
Sbjct: 63  KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRKDVEAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+++TR+ FR++LR GE++DKEI++E        S F+IPG  
Sbjct: 123 AELAAEERVLDALVGANASASTRDSFRRRLRAGELNDKEIEVET-QAGGGPSMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K MG GR K  +++V   Y  L+ +ESD+L+D + + RD+I  VEN
Sbjct: 182 GAQMGAISLGDIFGK-MG-GRTKMRKLTVADSYEVLVNEESDKLLDDEALTRDAIHAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+      VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVREGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ ES+LI QY  LM TEG+ LD T
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELQALVRDDLRRILTEPESSLIKQYVALMATEGVTLDIT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +N++V +IGARRLQTV+ERVL++ SF A D+  +TV IDA YV+ +I
Sbjct: 360 DDAIDALADVAVAVNASVENIGARRLQTVLERVLDETSFHAPDMHGQTVTIDAAYVQKYI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|149201420|ref|ZP_01878395.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
 gi|149145753|gb|EDM33779.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
          Length = 435

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/434 (58%), Positives = 332/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDRYIIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRYIIGQKEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  RD+V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMRDDVKTR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++ A+ G+ A   TR++FRKKLR+G + D  IDIEVADTSS +   DIPG  
Sbjct: 123 AEQAAEERVITAIAGEDARQGTRDMFRKKLREGLLDDTMIDIEVADTSSPLGMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NL ++F K  G  R    R+SV   Y  L+ +E+D+L+D +TVHR +++ VE 
Sbjct: 183 GSQMGMMNLGDIFGKAFGQ-RTTTKRVSVADSYALLIGEEADKLLDDETVHRTALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYTALMGTEEVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   +TV +DA +V  ++
Sbjct: 362 EDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGETVTVDAGFVEANL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELMRSADLSRYVL 435


>gi|83944946|ref|ZP_00957312.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851728|gb|EAP89583.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 434

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/432 (59%), Positives = 340/432 (78%), Gaps = 2/432 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIV ELDR+IIGQ DAK+AVAIALRNRWRR+ LP  LR+E+ PKNIL++GPTGVGK
Sbjct: 4   FSPREIVHELDRHIIGQGDAKKAVAIALRNRWRRKHLPEGLREEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ I RDLV+VAI++VRE +R+EV+ +A
Sbjct: 64  TEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIARDLVEVAISLVREKKREEVKAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPGGA 185
              AE+R+LDALVGK A S+TRE FRKKL  GE+ DKEI+IE+ D S++     D+PG  
Sbjct: 124 HGAAEQRVLDALVGKDAGSSTREAFRKKLLSGELDDKEIEIEIIDDSANPFQGMDLPGMG 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S+G++NL ++  K  G GR K +R +V++ Y  L+ +E+D+L+D + +  ++I++ EN G
Sbjct: 184 SMGVINLGDMLGKGFG-GRPKTLRTTVKEAYEPLINEEADKLLDENQIQSEAIRLAENEG 242

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAFH
Sbjct: 243 IVFLDEIDKVSARADARGADVSREGVQRDLLPLIEGATVSTKYGPMKTDHVLFIASGAFH 302

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           VS+P+DLLPE+QGR P+RV L++LN+ DFR ILT+ E++LI QY  LMKTEG  L F + 
Sbjct: 303 VSKPSDLLPELQGRLPIRVELQALNRDDFRAILTEPEASLITQYVALMKTEGFELSFDDS 362

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +IDA+AD A  +N++V +IGARRLQT++E+V E+IS++ASD   +++ IDA+YV   +G 
Sbjct: 363 AIDAIADFAAEVNASVENIGARRLQTILEKVCEEISYTASDRSGESLAIDADYVSDRVGG 422

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 423 LARNADLSKFIL 434


>gi|85705741|ref|ZP_01036838.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
 gi|85669731|gb|EAQ24595.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
          Length = 435

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/434 (58%), Positives = 333/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMREDVKTR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++ A+ G+ A   TRE+FRKKLRDG + D  ID+EVADTS+ +   DIPG  
Sbjct: 123 AEHAAEERVITAIAGEDAREGTREMFRKKLRDGLLDDTMIDVEVADTSNPLGMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NL ++F K  G GR    R+SV   Y  L+ +E+D+L+D + V+R +++ VE 
Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRTTTKRVSVADSYALLIGEEADKLLDDEAVNRTALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L ++DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEADFVRILTETDNALTLQYTALMGTEEVTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   ++VV+DA +V  ++
Sbjct: 362 EDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGESVVVDAAFVDTNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELMKSADLSRYVL 435


>gi|83594929|ref|YP_428681.1| ATP-dependent protease ATP-binding subunit HslU [Rhodospirillum
           rubrum ATCC 11170]
 gi|123766890|sp|Q2RNA1|HSLU_RHORT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83577843|gb|ABC24394.1| Heat shock protein HslU [Rhodospirillum rubrum ATCC 11170]
          Length = 435

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE++PKNIL++GPTGVGK
Sbjct: 4   FTPREIVSELDRHIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV+ A+   R+  R +V  +A
Sbjct: 64  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIIRDLVETALTQERDRLRKQVNAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
             NAEER+LDALVG  A+  TR+ FRK LR+G+I+DKEI+++V D+   +   DIPG  G
Sbjct: 124 EANAEERVLDALVGDRASPETRQKFRKMLREGQINDKEIEVQVQDSGGALPTMDIPGMPG 183

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +G+LNL+++F K  G+ R K  +M+V+  +  L+R+E+D+L+D + V + +I  VEN 
Sbjct: 184 AQMGMLNLNDIFGKAFGN-RTKARKMTVEDSHAVLVREEADKLLDEEQVVKAAIAAVENN 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI       G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF
Sbjct: 243 GIVFLDEIDKIATASERRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H ++PADLLPE+QGR P+RV L +LN  DF+ IL + E++LI QYK L+ TEG+ L+F +
Sbjct: 303 HTAKPADLLPELQGRLPIRVELSALNAGDFKRILLEPEASLITQYKALLATEGVTLEFPD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+++A+A++A  +N +V +IGARRL TV+ER+LE+ISF+A+D   +T+V+  + V+  +G
Sbjct: 363 DTVEAIAEIATEINGSVENIGARRLHTVLERLLEEISFTATDRSGETIVVTRDMVKERVG 422

Query: 425 DFPSETDMYHFIL 437
              ++ D+  FIL
Sbjct: 423 ALAAKADLSRFIL 435


>gi|163745124|ref|ZP_02152484.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161381942|gb|EDQ06351.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 435

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/434 (58%), Positives = 332/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQIIRDL+D +I + RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIIRDLLDSSIVMTREFMREDVKTK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++DA+ G  A   TRE+FRKKLR GE+ D  I++EVADTSS     DIPG  
Sbjct: 123 AEQAAEERVIDAIAGTDARDGTREMFRKKLRSGELDDTMIELEVADTSSPFPMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G   G++NL +LF K MG GR  K R++V   Y  L+ +E+D+L+D + V+R +I+ VE 
Sbjct: 183 GGGAGMMNLGDLFGKAMG-GRTTKKRLAVADSYEVLLGEEADKLLDDEAVNRAAIEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG+ VSTKYG++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKYGAVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  L++TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTRQYTALLRTEELTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E+ I ALA +A ++N++V +IGARRL TVMERV E++SF A D   + + +DA++V  ++
Sbjct: 362 EEGIAALAKIAADVNTSVENIGARRLYTVMERVFEEVSFDAPDRSGQEITVDADFVEKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELTRSTDLSRYVL 435


>gi|170738607|ref|YP_001767262.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           sp. 4-46]
 gi|238688061|sp|B0UFH4|HSLU_METS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|168192881|gb|ACA14828.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium sp.
           4-46]
          Length = 437

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/435 (59%), Positives = 335/435 (77%), Gaps = 3/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLHGPLREEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R  V+ +
Sbjct: 63  KTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183
           A   AE RILDALVG TA   TR+ FR++LR GE+ DKE++IE+A  + S +  F+IPG 
Sbjct: 123 AEAAAEARILDALVGPTAGQATRDSFRRRLRAGELDDKEVEIELASAAPSGLPMFEIPGV 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G +NL ++  K +G  + K  R++V+  +  LM +ESD+L+D D + +++++ VE
Sbjct: 183 PGAAMGAINLGDMLGKALGGQKGKPRRVTVRDAHAPLMAEESDKLLDQDAIVQEAVREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           + GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG
Sbjct: 243 DNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L  L   DFR ILT+TE++L+ Q   LM TEG+ + F
Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVAVTF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED++DALA VAV +NS+V +IGARRLQTV+ERVL++ISF+A D   ++V IDA YVR  
Sbjct: 363 TEDAVDALARVAVEVNSSVENIGARRLQTVLERVLDEISFTAPDRAGESVTIDAAYVRER 422

Query: 423 IGDFPSETDMYHFIL 437
           +       D+  FIL
Sbjct: 423 VESLAQNADLSRFIL 437


>gi|254511353|ref|ZP_05123420.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium KLH11]
 gi|221535064|gb|EEE38052.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium KLH11]
          Length = 435

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/434 (57%), Positives = 336/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP D+RDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDIRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL D AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLADAAILQTREYMREDVKTR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D EI++E++DTS+ +  FDIPG  
Sbjct: 123 AHQAAEDRVIEAIAGTDAREATREMFRKKLKAGELDDTEIELELSDTSNPMPMFDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G++NL ++F K  G GR  + +M+V + Y  L+ +E+D+L+D +TV+R +++ VE 
Sbjct: 183 GGQMGMMNLGDIFGKAFG-GRTVRRKMTVAESYEALIGEEADKLLDDETVNRVALESVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A ++N ++ +IGARRL TVMERV ED+SF+A D     V +DA +V  ++
Sbjct: 362 EDGIAALARIAADVNQSIENIGARRLYTVMERVFEDLSFAAPDKAGTEVTVDAAFVNDNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+  S TD+  ++L
Sbjct: 422 GELTSSTDLSRYVL 435


>gi|296448577|ref|ZP_06890450.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus
           trichosporium OB3b]
 gi|296253917|gb|EFH01071.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus
           trichosporium OB3b]
          Length = 435

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/434 (59%), Positives = 340/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ+DAKRAVA+ALRNRWRR +L   +R+E++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRFIVGQKDAKRAVAVALRNRWRRLRLEGSMREEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +V++ RR +V  +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIMLVKDKRRKDVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+  TR+ FRKKLR GE++DKEI+IE+A + + +  F++P   
Sbjct: 123 AQLAAEERVLDALVGPAASPATRDSFRKKLRAGEMNDKEIEIEIAQSGAQMPMFELPNMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASV   ++ ++F K    GR K+ +M V+  +  L+ +ES++LID +   R++I  VEN
Sbjct: 183 GASVSAFSIGDIFGKAF-QGRAKRRKMQVKDAHAPLLAEESEKLIDQEESVREAIAEVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA
Sbjct: 242 NGIVFLDELDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+TE+ L  QY  L+ TEG+ LDF 
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELASLDEEDFRRILTETEACLTKQYVALLATEGVALDFA 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             ++DA+A VAV +NS+V +IGARRLQTVMERVL+++SFSASD   +TV ID +YV  HI
Sbjct: 362 PSAVDAIARVAVQVNSSVENIGARRLQTVMERVLDEVSFSASDRAGETVTIDGDYVEKHI 421

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 422 GDLAKNRDLSRFIL 435


>gi|110677840|ref|YP_680847.1| ATP-dependent protease ATP-binding subunit HslU [Roseobacter
           denitrificans OCh 114]
 gi|122973096|sp|Q16CY2|HSLU_ROSDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109453956|gb|ABG30161.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter denitrificans OCh 114]
          Length = 435

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/434 (57%), Positives = 335/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+  RD+V+  
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDHMRDDVKAN 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++ A+ G+ A  +TRE+FRKKL+ G++ D  I+++VADTSS     DIPG  
Sbjct: 123 AHQAAEERVITAIAGEDARESTREMFRKKLKAGDLDDTVIELDVADTSSPFPMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G ++G++NL ++F K +G GR  + +M+V + Y  L+ +E+D+L+D +TV+R +I+ VE 
Sbjct: 183 GGNMGMMNLGDIFGKALG-GRTTRKKMTVSQSYDILIGEEADKLLDDETVNRAAIEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCAKSDTRGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SFSA D   + +++DA +V  ++
Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAGEEIIVDAAFVDENL 421

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  ++L
Sbjct: 422 GALAKSTDVSRYVL 435


>gi|84514931|ref|ZP_01002294.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
 gi|84511090|gb|EAQ07544.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
          Length = 432

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/432 (58%), Positives = 328/432 (75%), Gaps = 2/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++VR +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAILDTREHMREDVRTK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER++ A+ G  A   TRE+FR+KL+ GE+    I++E+ DT++ +  F+IPG  
Sbjct: 123 AREAAEERVITAVAGTDAREGTREMFRRKLKSGELDSTVIELELTDTTNPMGGFEIPGQP 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             G++NL +LF K MG GR  K RM+V   Y  L+ DE+D+L+D +TV + +++ VE  G
Sbjct: 183 G-GMMNLGDLFGKAMG-GRTVKKRMTVADSYDALIADEADKLLDDETVTKAALEAVEQSG 240

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGAFH
Sbjct: 241 IVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGAFH 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM+TE + + FTED
Sbjct: 301 VAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYSALMQTEQVTVTFTED 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A ++N  V +IGARRL TVMERV ED+SF+A D   + + +DA++V  H+G+
Sbjct: 361 GIKALAKIAADVNEAVENIGARRLYTVMERVFEDLSFNAPDRGGEEIAVDADFVEKHLGE 420

Query: 426 FPSETDMYHFIL 437
                D+  ++L
Sbjct: 421 LSRSVDVSRYVL 432


>gi|84501208|ref|ZP_00999413.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
 gi|84390499|gb|EAQ02987.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
          Length = 435

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/434 (56%), Positives = 335/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRSRWRRRQLEDDLRDEVFPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL+D AI + RE  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLMDSAIAMTREHMREDVKAT 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+++AL G  A   TRE+FRKKLR+GE+ D EI++++AD S+ ++  D+PG  
Sbjct: 123 AHKMAEDRVIEALAGSDAREGTREMFRKKLRNGELDDTEIELDLADNSNPMAMLDMPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G++NL ++F K  G G+  + +M V   Y  L+ +E+D+L+D +TV+R ++  VE 
Sbjct: 183 GQQMGMMNLGDIFGKAFG-GKTVRRKMRVADSYEVLLGEEADKLLDDETVNRAALTAVEE 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGAEVSREGVQRDLLPLIEGTTVSTKYGAVRTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L+SL ++DF  ILT+T++ L  QY  LM+TEG+ + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELQSLTEADFVAILTETDNALTRQYTALMETEGVSVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA  A ++N +V +IGARRL T+MERV E++SF A D   +T+ +DA++V  ++
Sbjct: 362 EDGIAALAKTAADVNQSVENIGARRLYTIMERVFEELSFHAPDRTGETISVDADFVNENV 421

Query: 424 GDFPSETDMYHFIL 437
           G   +  D+  ++L
Sbjct: 422 GKLAASADLSRYVL 435


>gi|149912868|ref|ZP_01901402.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. AzwK-3b]
 gi|149813274|gb|EDM73100.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. AzwK-3b]
          Length = 435

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/434 (57%), Positives = 331/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRA A+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRATAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDYMREDVKSK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R++ A+ G+ A  +TRE+FRKKLRDG + D  I+++VAD S+ +   DIPG  
Sbjct: 123 AHQQAEDRVIAAIAGEDARDSTREMFRKKLRDGLLDDTVIELDVADQSNPLGMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NL ++F K  G GR  + +M+V + Y  L+ +E+D+L+D DTVH+ +++ VE 
Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRTVRKKMTVSESYEALISEEADKLLDDDTVHKTALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTEDVTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D    TV +DA +V  ++
Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGDTVTVDAAFVDANL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELMKSADLSRYVL 435


>gi|163732950|ref|ZP_02140394.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
 gi|161393485|gb|EDQ17810.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
          Length = 435

 Score =  511 bits (1316), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/434 (57%), Positives = 334/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+  RD+V+  
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDLMRDDVKAN 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER++ A+ G+ A  NTRE+FRKKL+ G++ D  I+++VADTS+     DIPG  
Sbjct: 123 AHLAAEERVISAIAGEDARENTREMFRKKLKSGDLDDTIIELDVADTSNPFPTMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G ++G++NL ++F K +G GR  + +++V + Y  L+ +E+D+L+D +TV+R +I  VE 
Sbjct: 183 GGNMGMMNLGDIFGKALG-GRTTRKKLTVSQSYDVLIGEEADKLLDDETVNRAAIDSVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEKVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SFSA +     +V+DA +V  ++
Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPERAGDEIVVDAAFVDENL 421

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  ++L
Sbjct: 422 GALAKSTDVSRYVL 435


>gi|86136743|ref|ZP_01055321.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
 gi|85826067|gb|EAQ46264.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
          Length = 437

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/436 (58%), Positives = 337/436 (77%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V  +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIVQTREFMREDVTTK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AE+R++DAL G+ A   TREVFRKKL+ G++ D  I+++VAD+S+ + N FDIPG 
Sbjct: 123 AQKAAEDRVIDALAGEDAREITREVFRKKLKSGQLDDALIELDVADSSNPMGNMFDIPGQ 182

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++G+LN+  L  K MG GR  + +M+V + Y  L+ DE+D+L+D + V R +I+ V
Sbjct: 183 PGGGNMGVLNIGNLLGKAMG-GRTVRRKMTVAESYEVLISDEADKLLDDEVVTRAAIESV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIAS
Sbjct: 242 EQSGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHV++P+DLLPE+QGR P+RV+L+SL+++DF  ILT+T++ L LQY  LMKTE + + 
Sbjct: 302 GAFHVAKPSDLLPELQGRLPIRVNLRSLSETDFVRILTETDNALTLQYTALMKTEEVEVT 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + V ++A +V  
Sbjct: 362 FTEDGIAALAKIAAEVNHSVENIGARRLYTVIERVFEELSFNAPDRGGEKVTVNASFVGK 421

Query: 422 HIGDFPSETDMYHFIL 437
           H+G+  S +D+  ++L
Sbjct: 422 HLGELASRSDLSRYVL 437


>gi|21328719|gb|AAM48725.1| heat shock protein HslVU, ATPase subunit HslU [uncultured marine
           proteobacterium]
          Length = 435

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/434 (57%), Positives = 329/434 (75%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+I+GQ DAKRAVA+A+RNRWRR+QLP +LRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRHIVGQNDAKRAVAVAMRNRWRRKQLPDELRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD +I + R+  R++VR +
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSSIAVTRDHMREDVRAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+++A+ G  A   TRE+FRKKLR GE+ D  I++EVADTS+ +S  D+PG  
Sbjct: 123 AKEAAEERVIEAIAGADARDATREMFRKKLRSGELDDTVIELEVADTSNPMSMLDLPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NL ++F K MG GR  + +M+V   Y  L+ +E+D+L+D + V + +++ VE 
Sbjct: 183 GSQMGMMNLGDIFGKAMG-GRTSRKKMTVAASYDVLLGEEADKLLDDEIVTKAALKAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 SGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L+ L + DF  IL++TE+ L LQY  LM TE + + F+
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRDLTEEDFIRILSETENALTLQYSALMSTEDVSVSFS 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA  A  +N +V +IGARRL TV+ERV E++SF+A D     VVID  YV  H+
Sbjct: 362 EDGIKALAQAAAEVNRSVENIGARRLYTVIERVFEELSFAAPDQAGSEVVIDKAYVNKHL 421

Query: 424 GDFPSETDMYHFIL 437
                 TD+  ++L
Sbjct: 422 DSLLQSTDLSRYVL 435


>gi|260429465|ref|ZP_05783442.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp.
           SE45]
 gi|260420088|gb|EEX13341.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp.
           SE45]
          Length = 435

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/434 (55%), Positives = 337/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE  R++V+  
Sbjct: 63  KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIAMTREHMREDVKAA 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+++A+ GK A  +TRE+FRKKLR+GE+   EI+++VA+T+S     ++PG  
Sbjct: 123 AHKAAEDRVIEAIAGKDARDSTREMFRKKLRNGELDATEIELDVAETASPFPMMELPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G S+G++NLS++F K  G GR  + ++SV + Y  L+++E+D+L+D + V + +++ VE 
Sbjct: 183 GQSMGMMNLSDIFGKAFG-GRTTRKKLSVGESYEVLIQEEADKLLDDEVVKKAALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE +I++FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMATEEVIVEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E+ I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   +++ +D  +V  ++
Sbjct: 362 EEGIHALAKIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGESITVDGSFVETYL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELTRSADLSRYVL 435


>gi|260431950|ref|ZP_05785921.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415778|gb|EEX09037.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 435

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/434 (57%), Positives = 331/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   RE  R+EV+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLTDAAIVQTREFMREEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D  I++E+ADTS+ +  FDIPG  
Sbjct: 123 AHQAAEDRVIEAIAGADAREATREMFRKKLKSGELDDTVIELELADTSNPMPMFDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G++NL ++F K  G GR  K RM+V + Y  L+ +E+D+L+D + V R ++  VE 
Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRMVKRRMTVAESYDILIGEEADKLLDDEAVTRAALDSVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTENVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D I ALA +A  +N +V +IGARRL TVMERV ED+SF+A D     +V+DA++V  ++
Sbjct: 362 DDGIAALARIAAEVNRSVENIGARRLYTVMERVFEDLSFAAPDKAGAEIVVDAQFVDDNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELTKSADLSRYVL 435


>gi|254487280|ref|ZP_05100485.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp.
           GAI101]
 gi|214044149|gb|EEB84787.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp.
           GAI101]
          Length = 435

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/434 (58%), Positives = 335/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + R+  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIIMTRDHMREDVKVS 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++DA+ G  A   TR++FRKKL+ GE+    ID+EV DTSS     DIPG  
Sbjct: 123 AHKAAEERVIDAIAGADAREGTRDMFRKKLKAGELDATMIDLEVTDTSSPFPTMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G++NL +LF K MG GRK K R++V + Y  L+ +E+D+L+D +TV+R +I  VE 
Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRKVKKRLTVAESYEVLIGEEADKLLDDETVNRAAIDTVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVTVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ I ALA +A ++N ++ +IGARRL TVMERV E++SF+A D   +TVV+D ++V  ++
Sbjct: 362 DEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFTAPDRSGETVVVDGDFVEKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELTRSTDLSRYVL 435


>gi|329891071|ref|ZP_08269414.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           diminuta ATCC 11568]
 gi|328846372|gb|EGF95936.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           diminuta ATCC 11568]
          Length = 435

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/434 (60%), Positives = 346/434 (79%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR  V+ +
Sbjct: 63  KTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDKRRSGVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP-GG 184
           A   AEERILDALVG  +   TRE FRKKLR GE+ DKEI+I +ADT+S +   D+P GG
Sbjct: 123 AEGQAEERILDALVGPGSQPATREAFRKKLRAGELDDKEIEIALADTTSPLQGLDMPGGG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +VG+LNLSE+  K MG GR K ++++V+     L+ +ESD+L+D +++ ++++ + EN 
Sbjct: 183 GNVGLLNLSEMLGK-MGGGRTKTVKLTVRDALAPLVTEESDKLLDQESLTKEALLLAENE 241

Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVFLDE DK+ AR D G G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGA
Sbjct: 242 GIVFLDEIDKVAARQDRGGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TEG+ L FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEGVELVFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+++A+AD AV  NSTV +IGARRLQTVMERVLE+ SF ASDL  +T++ D + VR  +
Sbjct: 362 DDAVEAMADAAVAANSTVENIGARRLQTVMERVLEETSFKASDLSGQTLIFDGDKVREKV 421

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 422 GDLAKNVDLSRFIL 435


>gi|84684626|ref|ZP_01012527.1| ATP-dependent protease ATP-binding subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667605|gb|EAQ14074.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 435

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/434 (57%), Positives = 333/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREWMREDVKSA 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER++ A+ G  A   TRE+FRKKLR GE+ D  I+++V DT   +  FD+PG  
Sbjct: 123 AEHNAEERVISAVAGDQAREQTREMFRKKLRSGELDDTVIELDVQDTGGGMPMFDVPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G ++G++NLS++F K  G GR  + +M+V + Y  LM +E+D+L+D + V++ +++ VE 
Sbjct: 183 GMNMGMMNLSDMFGKAFG-GRTVRKKMTVAESYEILMGEEADKLLDDEAVNKIALESVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIASGA
Sbjct: 242 NGIVFIDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHMLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVKVSFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N+TV +IGARRL TVMERV E++SF+A D   + VV+D  +V+ ++
Sbjct: 362 EDGIAALARIAAEVNTTVENIGARRLYTVMERVFEELSFTAPDKSGEEVVVDEAFVQKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELMQSTDVGRYML 435


>gi|163742597|ref|ZP_02149983.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161384182|gb|EDQ08565.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 436

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/435 (57%), Positives = 336/435 (77%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI   RE  RD+V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AEER++DA+ G  A   TR++FRKKL+ GE+ D  I+++V+DTS+ +   F+IPG 
Sbjct: 123 ARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL +LF K MG GR  + +M+V   Y  L+ +E+D+L+D +TV + +++ VE
Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVTVSF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   +TV +DA +VR +
Sbjct: 362 TDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 422 LGELTKSADVSRYVL 436


>gi|217978698|ref|YP_002362845.1| ATP-dependent protease ATP-binding subunit HslU [Methylocella
           silvestris BL2]
 gi|254802312|sp|B8EM94|HSLU_METSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217504074|gb|ACK51483.1| heat shock protein HslVU, ATPase subunit HslU [Methylocella
           silvestris BL2]
          Length = 437

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/436 (60%), Positives = 339/436 (77%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR +L   +RDE++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLRLEGSMRDEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA++AGAPF+KVE TKFTEIGYVGR+VEQI+RDLV+ AI++++E +R  VR +
Sbjct: 63  KTEISRRLAKMAGAPFLKVEATKFTEIGYVGRDVEQIVRDLVETAISMIKEDKRKLVRAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A + AE+RILDALVG  A+  TR+ FRKKLR GE+ DKEI++E+A  S   +  F++P  
Sbjct: 123 AELAAEDRILDALVGPGASPPTRDSFRKKLRAGELEDKEIEVEIAQGSGGAMPMFELPNM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G ++L ++F K  G G K + RMSV+     L+ +E D+L+D D + R++I  VE
Sbjct: 183 PGAQIGAMSLGDMFGKAFGKGGKPR-RMSVKDAVEPLITEEGDKLMDQDVIVREAIVEVE 241

Query: 243 NYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           N GIVFLDE DKI  R+ S  G  VSREGVQRDLLPL+EG++V TK+G + TDHILFIAS
Sbjct: 242 NNGIVFLDEIDKICVREGSRGGADVSREGVQRDLLPLIEGANVPTKHGVVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L  L + DFR ILTDTE++L+ QY+ LM+TEG+ L 
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELAPLTEDDFRRILTDTEASLLKQYEALMRTEGVELS 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT D+++ALA +A  +NS+V +IGARRLQTVMERVL++ISFSA+D   + + IDA YV  
Sbjct: 362 FTPDAVNALAKIAAQVNSSVENIGARRLQTVMERVLDEISFSATDRFGEKIEIDAAYVEQ 421

Query: 422 HIGDFPSETDMYHFIL 437
           HIGD     D+  FIL
Sbjct: 422 HIGDLARNADLSRFIL 437


>gi|254462139|ref|ZP_05075555.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium HTCC2083]
 gi|206678728|gb|EDZ43215.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 443

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/434 (56%), Positives = 337/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 11  DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+ AI+  RE  R++V+ +
Sbjct: 71  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVENAISETREYMREDVKSK 130

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+++A+ G+ A   TRE+FRKKLR G++ +  I++E+ADTS+ +S F+IPG  
Sbjct: 131 AEAAAEERVIEAIAGEGARDATREMFRKKLRSGDLDNTVIELEIADTSNPMSGFEIPGQP 190

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+++G++N+ +LF K MG GR  + +M+V + Y  L+ DE+D+L+D ++V R +++ VE 
Sbjct: 191 GSNMGMMNIGDLFGKAMG-GRTTRKKMTVSESYDVLIGDEADKLLDDESVTRAALEAVEQ 249

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA
Sbjct: 250 NGIVFLDEIDKVCTRADARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 309

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM+TE +I+ FT
Sbjct: 310 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMQTEEVIVSFT 369

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + + +D+ +V  ++
Sbjct: 370 DDGIAALAKIAAEVNQSVENIGARRLYTVLERVFEELSFTAPDRGGEEISVDSAFVETYL 429

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 430 GELSRSTDVSRYVL 443


>gi|163738007|ref|ZP_02145423.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter
           gallaeciensis BS107]
 gi|161388623|gb|EDQ12976.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter
           gallaeciensis BS107]
          Length = 436

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/435 (57%), Positives = 336/435 (77%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI   RE  RD+V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AEER++DA+ G  A   TR++FRKKL+ GE+ D  I+++V+DTS+ +   F+IPG 
Sbjct: 123 ARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL +LF K MG GR  + +M+V   Y  L+ +E+D+L+D +TV + +++ VE
Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVNVSF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   +TV +DA +VR +
Sbjct: 362 TDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 422 LGELTKSADVSRYVL 436


>gi|83942014|ref|ZP_00954476.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
 gi|83847834|gb|EAP85709.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
          Length = 435

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/434 (58%), Positives = 334/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKVS 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++DA+ GK A   TR++FRKKL+ GE+ D  I++EVADTSS     DIPG  
Sbjct: 123 AHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G++NL +LF K MG GR  K R+SV + Y  L+ +E+D+L+D +TV+R +I+ VE 
Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D   + + +D ++V  ++
Sbjct: 362 DEGIQALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELTRSTDLSRYVL 435


>gi|83953063|ref|ZP_00961785.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83842031|gb|EAP81199.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 435

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/434 (58%), Positives = 334/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKVS 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++DA+ GK A   TR++FRKKL+ GE+ D  I++EVADTSS     DIPG  
Sbjct: 123 AHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G++NL +LF K MG GR  K R+SV + Y  L+ +E+D+L+D +TV+R +I+ VE 
Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D   + + +D ++V  ++
Sbjct: 362 DEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELTRSTDLSRYVL 435


>gi|159045981|ref|YP_001534775.1| ATP-dependent protease ATP-binding subunit HslU [Dinoroseobacter
           shibae DFL 12]
 gi|189043909|sp|A8LPA9|HSLU_DINSH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157913741|gb|ABV95174.1| ATP-dependent HslUV protease [Dinoroseobacter shibae DFL 12]
          Length = 437

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/436 (56%), Positives = 329/436 (75%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLREEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI + R+  R+EV+  
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVENAITMTRDHMREEVKAN 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER+++A+ G  A   TRE+FRKKL+ GE+ D  I++EVADTS+ +S F+IPG  
Sbjct: 123 AHQAAEERVIEAIAGSDAREATREMFRKKLKAGELDDTVIELEVADTSNPMSMFEIPGQP 182

Query: 186 SV----GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +    G ++L ELF K  G GR  + +++V + Y  L+ +E+D+L+D + V+R ++  V
Sbjct: 183 GMNPMGGGMDLVELFGKAFG-GRTVRKKLTVAQSYEVLISEEADKLLDDEAVNRSAVTAV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIAS
Sbjct: 242 EQNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L+ L + DF  ILT+T++ L LQY  LM TE + + 
Sbjct: 302 GAFHIAKPSDLLPELQGRLPIRVELRPLTEQDFVRILTETDNALTLQYTALMGTESVTVT 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     + +DAE+V  
Sbjct: 362 FAEDGIAALARIAAEVNQSVENIGARRLYTVMERVFEELSFAAPDRSGDEITVDAEFVEA 421

Query: 422 HIGDFPSETDMYHFIL 437
           ++G    +TD+  ++L
Sbjct: 422 NLGALTRDTDLSRYVL 437


>gi|99082691|ref|YP_614845.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria sp.
           TM1040]
 gi|123252063|sp|Q1GCN3|HSLU_SILST RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|99038971|gb|ABF65583.1| heat shock protein HslVU ATPase subunit HslU [Ruegeria sp. TM1040]
          Length = 436

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/435 (56%), Positives = 340/435 (78%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREHMREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AE+R+L+A+ G  A  +T E+FRKKL+ GE+ D  I++++ADTS+ +   F+IPG 
Sbjct: 123 AHKAAEDRVLEAIAGTDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G++NL +LF K MG GR  + +++V + Y  L+ +E+D+L+D +TV++ +++ VE
Sbjct: 183 PGANMGMMNLGDLFGKAMG-GRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L  QY+ L+ TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVTF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I ALA +A  +N TV +IGARRL TVMERV E++SF+A D   + +++D  +V  +
Sbjct: 362 TKDGIHALAQIAAEVNHTVENIGARRLYTVMERVFEEMSFAAPDRSGEEIIVDEPFVTKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 422 LGELTKSTDLSRYVL 436


>gi|126734393|ref|ZP_01750140.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. CCS2]
 gi|126717259|gb|EBA14123.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. CCS2]
          Length = 435

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/434 (58%), Positives = 330/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R++ A+ G  A   TRE+FRKKL+ GE+ +  I++E+ DTS+ +  F+IPG  
Sbjct: 123 ARAAAEDRVITAVAGTDARDTTREMFRKKLKSGELDNTVIELELTDTSNPMGGFEIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G   G++NL +LF K MG GR  K +M+V   Y  L+ DE+D+L+D +TV + +++ VE 
Sbjct: 183 GGMGGMMNLGDLFGKAMG-GRTVKKQMTVADSYEALVADEADKLLDDETVTKAALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LMKTE + + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYSALMKTEEVTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E+ I ALA +A  +N +V +IGARRL TV+ERV ED+SF+A D     + IDA +V  H+
Sbjct: 362 ENGIKALAKIAAEVNESVENIGARRLYTVIERVFEDLSFNAPDRAGDDIAIDAAFVEEHL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELSRSTDISRYVL 435


>gi|56698693|ref|YP_169070.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria pomeroyi
           DSS-3]
 gi|62286712|sp|Q5LLP0|HSLU_SILPO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56680430|gb|AAV97096.1| ATP-dependent hsl protease, ATP-binding subunit HslU [Ruegeria
           pomeroyi DSS-3]
          Length = 435

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/434 (56%), Positives = 329/434 (75%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   R+  RDEVR +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAIVQTRDYMRDEVRAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R++ A+ G+ A   TRE+FRKKL+ GE+ D  I++EVAD ++ +  F+IPG  
Sbjct: 123 AHKAAEDRVITAIAGEDAREGTREMFRKKLKSGELDDTVIELEVADGANPMPMFEIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G ++G++NL +LF K   +GR  + ++ V   Y  L+ +E+D+L+D + V++ +++ VE 
Sbjct: 183 GGNMGMMNLGDLFGKAF-AGRTTRKKLRVADSYEILIGEEADKLLDDELVNKTALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTENVAVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            D I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   + V +DA +V  ++
Sbjct: 362 PDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRSGEAVTVDAGFVDTNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 422 GELTRSTDLSRYVL 435


>gi|304320679|ref|YP_003854322.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299581|gb|ADM09180.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 435

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/434 (56%), Positives = 327/434 (75%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +++PREIVSELDR+I+GQ +AKRAVA+ALRNRWRRQQLP  LRDE+ PKNIL++GPTGVG
Sbjct: 3   SYTPREIVSELDRFIVGQTEAKRAVAVALRNRWRRQQLPDHLRDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+L GAPF+KVE TKFTE+GYVGR+V+QIIRDL +V++ ++RE RR++V+ +
Sbjct: 63  KTEISRRLAKLVGAPFLKVEATKFTEVGYVGRDVDQIIRDLTEVSMQLIRERRREQVKSR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+L ALVG+ A+  TR  FRKKL  GE+ D EI+I++ D+      FDIPG  
Sbjct: 123 AHDAAEERVLSALVGENASEATRASFRKKLHAGELDDAEIEIDLQDSGKGAPMFDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G++NLS++  K +G G+ K  +M V+  Y  L+ +ESD+L+D D V ++++  VEN
Sbjct: 183 GAQMGMINLSDIMGKALG-GQTKTRKMKVKDVYEPLIAEESDKLLDDDQVAQEALAAVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+       G  VSREGVQRDLLPL+EGS VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKVAKSSDRGGADVSREGVQRDLLPLIEGSVVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L +L   DF  ILTDTE++L  QY  L++TEG+ + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELSALTVDDFVSILTDTEASLPKQYTALLETEGLTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D I  LA+ A  +N+ V +IGARRL T++ERVLE++SF A++   +TV IDA +V   +
Sbjct: 362 DDGIVRLAEKAAEVNANVENIGARRLSTILERVLEEVSFDAAERAGETVTIDAAFVDTRL 421

Query: 424 GDFPSETDMYHFIL 437
                  D+  +IL
Sbjct: 422 EGLAGNADLSKYIL 435


>gi|144898075|emb|CAM74939.1| heat shock protein HslVU, ATPase subunit HslU [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 442

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/437 (58%), Positives = 341/437 (78%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLPDALREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV++AI ++RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEIAIGMMRERLRKQVVPKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            + AEER+LD LVG+TA+++TR+ FRK LR+G +  +E++I+VAD+ +  + +FDIPG  
Sbjct: 126 ELAAEERLLDVLVGETASADTRQKFRKMLREGALDGREVEIQVADSGAGAMPSFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NLS++  K  G GR K  +MSV      L+ +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLSDMLGKAFGGGRTKPRKMSVPDALAALLAEESDKLLDQDAVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVFLDE DKI AR S + +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIAS
Sbjct: 246 HGIVFLDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVSTKHGNVKTDHILFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+ E++LI QY  L+ TE ++L 
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELQALTRDDFVRILTEPEASLIKQYVALLGTEEVLLK 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           F + +I A+AD+A  +N +V +IGARRL TV+ER+LE+ISF+A D    T + I A  V 
Sbjct: 366 FDDGAIAAIADLAAEINRSVENIGARRLHTVLERLLEEISFTAPDQSPGTEIAITAAMVN 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G    + D+  FIL
Sbjct: 426 ERVGALAKKADLAKFIL 442


>gi|254475576|ref|ZP_05088962.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11]
 gi|214029819|gb|EEB70654.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11]
          Length = 436

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/435 (56%), Positives = 337/435 (77%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIVQTREHMREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AE+R+L A+ G+ A   TRE+FRKKL+ GE+ D  I++++ DTS+ +   F+IPG 
Sbjct: 123 ARTAAEDRVLTAIAGEDARDATREMFRKKLKAGELDDTVIELDITDTSNPMGGMFEIPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL +LF K MG GR  + +M+V + Y  L+ +E+D+L+D +TV + +++ VE
Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVAQSYDVLIGEEADKLLDDETVTKAALESVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCARQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEDDFVRILTETDNALTLQYTALLGTEDVTVSF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   + + +DA++VR +
Sbjct: 362 TKDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRAGEEIKVDADFVRKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 422 LGELTKSADVSRYVL 436


>gi|259417743|ref|ZP_05741662.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp.
           TrichCH4B]
 gi|259346649|gb|EEW58463.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp.
           TrichCH4B]
          Length = 436

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/435 (56%), Positives = 339/435 (77%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   R+  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTRDHMREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AE+R+L+A+ G  A  +T E+FRKKL+ GE+ D  I++++ADTS+ +   F+IPG 
Sbjct: 123 AHQAAEDRVLEAIAGSDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G++NL +LF K MG GR  + +++V + Y  L+ +E+D+L+D +TV++ +++ VE
Sbjct: 183 PGANMGMMNLGDLFGKAMG-GRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L  QY+ L+ TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVTF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I ALA +A  +N T+ +IGARRL TVMERV E+ISF+A D   + V +D  +V  +
Sbjct: 362 TKEGIHALAQIAAEVNHTIENIGARRLYTVMERVFEEISFAAPDRSGEEVTVDEAFVNKN 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 422 LGELTKSTDLSRYVL 436


>gi|329848325|ref|ZP_08263353.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           biprosthecum C19]
 gi|328843388|gb|EGF92957.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           biprosthecum C19]
          Length = 432

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/432 (56%), Positives = 336/432 (77%), Gaps = 2/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIG  DAK+AVA+ALRNRWRR+   A +RDE+ PKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRHIIGHNDAKKAVAVALRNRWRRKATDASIRDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ A+ ++++  R  VR +
Sbjct: 63  KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAMLMIKDKNRAGVRAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER++DALVG TA   TR+ FRKKLR+ E+ DKE+++++ +T S I   +IPG A
Sbjct: 123 AEAAAEERLIDALVGNTAGQATRDSFRKKLRNNELDDKEVELQLTETGSPIGMIEIPGQA 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                NL ++ SK MG GRKK ++ SV+  +P L+ +ESDRL+D + V  +++ + EN G
Sbjct: 183 GNN-FNLGDMLSKAMG-GRKKTVKTSVKAAWPTLIAEESDRLLDQEAVASEALSLAENEG 240

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 241 IVFLDEIDKVASRSERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LMKTEG+ L+F + 
Sbjct: 301 VAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMKTEGVTLEFDDG 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +I  +A  A ++N+ V +IGARRL TV+E+V+E++S++ASD+  +TV+IDA+YV+  +GD
Sbjct: 361 AIAEMAAAAASVNAKVENIGARRLHTVIEKVMEELSYAASDMAGQTVLIDADYVKRRLGD 420

Query: 426 FPSETDMYHFIL 437
             ++ D+  +IL
Sbjct: 421 IATDADLSRYIL 432


>gi|254464268|ref|ZP_05077679.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium Y4I]
 gi|206685176|gb|EDZ45658.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium Y4I]
          Length = 435

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/434 (56%), Positives = 335/434 (77%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+  
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTREYMREDVKAN 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D  I+++VADTS+ +  F+IPG  
Sbjct: 123 ARKAAEDRVVEAIAGSDAREATREMFRKKLKAGELDDTVIELDVADTSNPMGMFEIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G ++G+LNL +LF K MG GR  + +++V + Y  L+ +E+D+L+D +TV R +++ VE 
Sbjct: 183 GGNMGMLNLGDLFGKAMG-GRTIRKKLTVAESYEVLIGEEADKLLDDETVTRIALESVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + + FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMGTEEVEVAFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   ++V +DA +V  ++
Sbjct: 362 EDGIAALAKIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGESVTVDAAFVTKNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+    +D+  ++L
Sbjct: 422 GELGRSSDLSRYVL 435


>gi|126738518|ref|ZP_01754223.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
 gi|126720317|gb|EBA17023.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
          Length = 436

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/435 (58%), Positives = 341/435 (78%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAILQTREYMREDVKTK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A   AE+R+++A+ G+ A   TRE+FRKKL+ GE+ D EI++++AD+S+ + N F++PG 
Sbjct: 123 AHKAAEDRVIEAIAGEDAREATREMFRKKLKTGELDDTEIELDLADSSNPMGNMFEVPGQ 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNL ++F K MG GR  + RMSV + Y  L+ +E+D+L+D + V R +++ VE
Sbjct: 183 PGANMGMLNLGDIFGKAMG-GRTIRKRMSVAQSYEVLIGEEADKLLDDEQVTRAALESVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  LM TE + ++F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALMGTEEVEVEF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + + I+AEYV  H
Sbjct: 362 TEDGIAALAKIAAEVNQSVENIGARRLYTVIERVFEELSFTAPDRSGEKIFINAEYVGKH 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 422 LGELSKSTDVSRYVL 436


>gi|297180838|gb|ADI17043.1| ATP-dependent protease hslVU (clpYQ), ATPase subunit [uncultured
           alpha proteobacterium HF0010_30A23]
          Length = 437

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/435 (55%), Positives = 327/435 (75%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRRQQL  +LR+E++PKNIL++GPTG G
Sbjct: 5   NFSPREIVSELDRFIVGQADAKRAVAVALRNRWRRQQLADNLREEVLPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++AI   RE +RD V+ +
Sbjct: 65  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVELAITTTREQQRDAVKAK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A I AE+R++D L G  A ++T++ FRK LR+G++ D+E+++E+ D S     + DIPG 
Sbjct: 125 AEIIAEDRLIDVLTGAEANNDTKQKFRKMLREGKLDDREVEVELNDKSGGGFPSMDIPGM 184

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++N+ E+   +    RK K ++ V + Y +L+ +E+D LID + + R +IQ VE
Sbjct: 185 PGSQMGMINIGEMLGGL--GQRKVKRKLKVNEAYEQLVEEEADNLIDQEDLTRTAIQRVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI       G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFI SG
Sbjct: 243 NDGIVFLDEIDKIAVNSEVRGGSVSREGVQRDLLPLIEGTTVTTKYGPVKTDHVLFICSG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+S+P+DLLPE+QGR P+RV L  L + D + IL + E++L+ QY  L+ TEG+ LDF
Sbjct: 303 AFHLSKPSDLLPELQGRMPIRVELSPLTRDDLKRILVEPENSLVKQYVALLATEGVTLDF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            + SIDALAD++  +N TV +IGARRL TVMER+LE+ISFSA D   +T+ I  + VR  
Sbjct: 363 NDGSIDALADLSAEINQTVENIGARRLATVMERLLEEISFSAPDRSGETIQITEDKVRSE 422

Query: 423 IGDFPSETDMYHFIL 437
           +G+   + D+  FIL
Sbjct: 423 VGELAKDADLSRFIL 437


>gi|114769762|ref|ZP_01447372.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|114549467|gb|EAU52349.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|161170258|gb|ABX59228.1| ATP-dependent protease HslVU ClpYQ ATPase subunit [uncultured
           marine bacterium EB000_55B11]
 gi|297183787|gb|ADI19910.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 434

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/433 (54%), Positives = 330/433 (76%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDR+IIGQ DAKR+VA+ALRNRWRR +L  D+RDE+ PKNIL++GPTGVG
Sbjct: 3   NLTPREIVSELDRFIIGQNDAKRSVAVALRNRWRRNKLDDDIRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI +++E++R++V   
Sbjct: 63  KTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIVMIKENKREKVNAG 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGG 184
           A  NAE R+LDAL G  A   TR+VFRKKLR+G + DKEI++++ DT++ +    DIPG 
Sbjct: 123 AYNNAENRVLDALCGSDAREQTRDVFRKKLREGLLDDKEIELDLTDTTNPMGGMVDIPGQ 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++N+ E+F K MG GR  K ++ +   Y  L+ +E+D+L+D + V +++++ VE  
Sbjct: 183 PGMGMMNIGEIFGKAMG-GRTIKRKIKIADSYKILIDEEADKLVDQEAVTKEAVEAVEAN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKVCAKTDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + FT+
Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEKDFVRILTETDNALTRQYSALMATENVDVSFTK 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
             I ALA +A  +N ++ +IGARRL T++ERV E++SF+A D   +++ +D+++V  H+G
Sbjct: 362 GGIAALAKIAAEVNESIENIGARRLHTIIERVFEELSFTAPDRSGESIKVDSKFVEKHLG 421

Query: 425 DFPSETDMYHFIL 437
           +     D+  ++L
Sbjct: 422 ELARSNDLSRYVL 434


>gi|307292834|ref|ZP_07572680.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium
           chlorophenolicum L-1]
 gi|306880900|gb|EFN12116.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium
           chlorophenolicum L-1]
          Length = 435

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/438 (55%), Positives = 329/438 (75%), Gaps = 4/438 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+  N +P+ IV+ LD +IIGQ DAKRAVA+ALRNRWRRQ+L ADLRDE+ PKNIL++G
Sbjct: 1   MKMNDNLTPKAIVAALDAHIIGQADAKRAVAVALRNRWRRQRLAADLRDEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+
Sbjct: 61  PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            VRE AS  A  R+LDAL GK A+  TR  FR+++ + +++D E+++EVAD+ S     +
Sbjct: 121 AVREAASEAAMTRLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPS--MPME 178

Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           IPG G  +G++NLS++ SK  G  +KK+ ++ V + + +L+ +E D+ +D D V R +I 
Sbjct: 179 IPGMGGQIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAIN 238

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFI
Sbjct: 239 SAEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFI 297

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFHV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TEG+ 
Sbjct: 298 ASGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVT 357

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +D T D I A+A +A  +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV
Sbjct: 358 VDLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYV 417

Query: 420 RLHIGDFPSETDMYHFIL 437
              +      TD+  ++L
Sbjct: 418 EKQLAVVARNTDLSKYVL 435


>gi|294011680|ref|YP_003545140.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium
           japonicum UT26S]
 gi|292675010|dbj|BAI96528.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium
           japonicum UT26S]
          Length = 435

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/438 (55%), Positives = 328/438 (74%), Gaps = 4/438 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+  N +P+ IVS LD +IIGQ DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++G
Sbjct: 1   MKMNDNLTPKAIVSALDAHIIGQADAKRAVAVALRNRWRRQRLSPDLRDEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+
Sbjct: 61  PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            VRE AS  A  R+LDAL GK A+  TR  FR+++ + +++D E+++EVAD+ S     +
Sbjct: 121 AVREAASEAAMARLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPS--MPME 178

Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           IPG G  +G++NLS++ SK  G  +KK+ ++ V + + +L+ +E D+ +D D V R +I 
Sbjct: 179 IPGMGGQIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAIN 238

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFI
Sbjct: 239 SAEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFI 297

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFHV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TEG+ 
Sbjct: 298 ASGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVT 357

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +D T D I A+A +A  +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV
Sbjct: 358 VDLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYV 417

Query: 420 RLHIGDFPSETDMYHFIL 437
              +      TD+  ++L
Sbjct: 418 EKQLSAVARNTDLSKYVL 435


>gi|126460959|ref|YP_001042073.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides ATCC 17029]
 gi|166221600|sp|A3PG35|HSLU_RHOS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126102623|gb|ABN75301.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 433

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ +
Sbjct: 63  KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G  
Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G++NL E+F K  G GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  G
Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTED
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G+
Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFQAPDRSGEEVTVDAAYVEKNLGE 421

Query: 426 FPSETDMYHFIL 437
               +D+  ++L
Sbjct: 422 LARSSDLSRYVL 433


>gi|254705083|ref|ZP_05166911.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           3 str. 686]
 gi|261755785|ref|ZP_05999494.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 3 str. 686]
 gi|261745538|gb|EEY33464.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 3 str. 686]
          Length = 356

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/353 (66%), Positives = 301/353 (85%), Gaps = 4/353 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K MG GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETE 353


>gi|221641023|ref|YP_002527285.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides KD131]
 gi|254802315|sp|B9KRH0|HSLU_RHOSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221161804|gb|ACM02784.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter
           sphaeroides KD131]
          Length = 433

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ +
Sbjct: 63  KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G  
Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G++NL E+F K  G GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  G
Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKAAALEAVQQNG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTED
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G+
Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421

Query: 426 FPSETDMYHFIL 437
               +D+  ++L
Sbjct: 422 LARSSDLSRYVL 433


>gi|126724539|ref|ZP_01740382.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126705703|gb|EBA04793.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 435

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/434 (56%), Positives = 332/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDR++IGQ DAKRAVA+ALRNRWRR QL  DL+ E+ PKNIL++GPTGVG
Sbjct: 3   NLTPREIVSELDRFVIGQNDAKRAVAVALRNRWRRNQLSDDLKAEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI++ RE+ R+EV   
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDSAISMTRENMREEVNAN 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+LDA+ G+ +   TR++FR+KLR GE+   EI+++VA+T+     FDIPG  
Sbjct: 123 ARAAAEERVLDAIAGENSREGTRDMFRRKLRAGELDSTEIELDVAETAKGSPLFDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ +G+LNL ++F K +G    +K +M+V + Y  L+ +E+D+L+D +TV R ++  VE 
Sbjct: 183 GSQMGMLNLQDMFGKALGQQTSRK-KMTVAESYDLLIGEEADKLLDDETVTRLAMASVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L ++DF  ILT+T++ L LQY  LM TE + ++FT
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTENDFVRILTETDNALTLQYTALMATEEVAVEFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ I ALA +A ++N +V +IGARRL TV+ERV ED+SF+A D   +TV +DA +V  H+
Sbjct: 362 DEGIAALAKIAADVNESVENIGARRLYTVLERVFEDLSFNAPDQNGETVKVDAAFVDKHL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELTKSADLSRYVL 435


>gi|255261958|ref|ZP_05341300.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp.
           R2A62]
 gi|255104293|gb|EET46967.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp.
           R2A62]
          Length = 435

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/434 (56%), Positives = 326/434 (75%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI   RE+ RD+V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDAAIIQTRENMRDDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+R++ A+ G+ A  +T+ +FRKKL+ GE+    I++E+ DTS+ +   +IPG  
Sbjct: 123 AHKAAEDRVVAAIAGEDARESTQNMFRKKLKTGELDKTIIELELTDTSNPMKGMEIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G   G++N+ ++F K  G GR  K RM+V + Y  L+ +E+D+L+D +TV R +++ VE 
Sbjct: 183 GQMGGMMNIGDIFGKAFG-GRTVKKRMTVSESYDVLISEEADKLLDDETVTRAALEAVEQ 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G+I TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARADARGGDVSREGVQRDLLPLIEGTTVSTKHGAIKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L +SDF  ILT+T++ L  QY  LM TE + + F 
Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTESDFIRILTETDNALTRQYTALMGTEDVTVTFK 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TV+ERV E++SFSA D     V ID  +V  H+
Sbjct: 362 EDGIAALARIAAEVNESVENIGARRLYTVLERVFEELSFSAPDRSGDEVTIDHAFVEEHL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELAKSADLSRYVL 435


>gi|77462070|ref|YP_351574.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides 2.4.1]
 gi|123744260|sp|Q3J6B1|HSLU_RHOS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77386488|gb|ABA77673.1| Heat shock protein HslVU, ATPase subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 433

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 327/432 (75%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ +
Sbjct: 63  KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+    I+I+VADTS+ +   D  G  
Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDSTVIEIDVADTSNPMQMLDPTGQG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G++NL E+F K  G GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  G
Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTED
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G+
Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421

Query: 426 FPSETDMYHFIL 437
               +D+  ++L
Sbjct: 422 LARSSDLSRYVL 433


>gi|296533581|ref|ZP_06896149.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas
           cervicalis ATCC 49957]
 gi|296266089|gb|EFH12146.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas
           cervicalis ATCC 49957]
          Length = 445

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/436 (54%), Positives = 327/436 (75%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ +AKRAVAIALRNRWRRQQLP  +R+E++PKNIL++GPTG G
Sbjct: 11  NLSPREIVSELDRFIIGQHEAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+++I   RE  R EV+ +
Sbjct: 71  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEISITRTREVARKEVQAK 130

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGG 184
           A + AEER++ ALVG+ A+  TR  FR+ LR+G +  KE++++VAD      +  D+PG 
Sbjct: 131 AELAAEERLITALVGEGASGETRMKFRRMLREGSLEQKEVEVQVADQGPAAGAAMDVPGM 190

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               + N+ E+  K+ G  ++ + +M+V +    L +DE+DRL+D + + RD++   EN 
Sbjct: 191 PPGQMANIQEMMGKMFGRPQRAR-KMTVAEARRALTQDEADRLLDQEKLTRDAVAHAENN 249

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           GIVF+DE DK+ AR S +G     VSREGVQRDLLPL+EG++V+TK+G + TDHILF+AS
Sbjct: 250 GIVFVDEIDKVCARSSDSGFRGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFVAS 309

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L +L + DFR ILT+ E +L  QY  L+ TEG+ L 
Sbjct: 310 GAFHIAKPSDLLPELQGRLPIRVELGALTRDDFRRILTEPEHSLAKQYVALLSTEGVALQ 369

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            TED+I+A+AD+A ++N+ V +IGARRL TV+E++LE+ISFSASD   +TV +DA YV+ 
Sbjct: 370 LTEDAIEAIADLAADINARVENIGARRLATVLEKLLEEISFSASDRHGETVRVDAAYVKE 429

Query: 422 HIGDFPSETDMYHFIL 437
            +    +  D+  FIL
Sbjct: 430 KVAPLAASADLSRFIL 445


>gi|332559997|ref|ZP_08414319.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides WS8N]
 gi|332277709|gb|EGJ23024.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides WS8N]
          Length = 433

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ +
Sbjct: 63  KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G  
Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G++NL E+F K  G GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  G
Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQY+ LM+TE + + FTED
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYRALMQTEKVGITFTED 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G+
Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421

Query: 426 FPSETDMYHFIL 437
               +D+  ++L
Sbjct: 422 LARSSDLSRYVL 433


>gi|83950789|ref|ZP_00959522.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
 gi|83838688|gb|EAP77984.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
          Length = 435

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/434 (56%), Positives = 332/434 (76%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLSEDLRDEVFPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI + R+  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIAMTRDHMREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++ A+ G+ A   TRE+FR+KL+ GE+ D  I++++ADTS+     DIPG  
Sbjct: 123 AHHAAEERVISAIAGEDAREGTREMFRQKLKKGELDDTMIELDLADTSNPFGMMDIPGQP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G+LNL ++F K +G GR K+ RMSV + Y  L+ +E+D+L+D +TV R +I+ VE 
Sbjct: 183 GGQMGMLNLGDMFGKALG-GRTKRQRMSVAESYEILIGEEADKLLDDETVTRAAIEAVEE 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY+ LM TE + + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYEALMSTENLTVRFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I A+A +A  +N +V +IGARRL TVMERV E++SF A D    ++ +DA +V  ++
Sbjct: 362 EDGIAAIARIAAEVNRSVENIGARRLYTVMERVFEELSFVAPDRSGDSITVDAGFVEDNL 421

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 422 GELARSADLSRYVL 435


>gi|146278980|ref|YP_001169139.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166221601|sp|A4WWS0|HSLU_RHOS5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145557221|gb|ABP71834.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 433

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 324/432 (75%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  D+RDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDIRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ +
Sbjct: 63  KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKSR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+R+++A+ G+ A   TRE+FR KL+ GE+    I++EVADTS+ +   D  G  
Sbjct: 123 AVKAAEDRVIEAIAGRDAREQTREMFRGKLKRGELDATVIEVEVADTSNPMQMLDPTGQG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G++NL E+F K  G GR  + +M+V + +  LM +E+D+L+D + V   +++ V+  G
Sbjct: 183 QMGMMNLGEIFGKAFG-GRTTRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQENG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L  QYK LMKTE + + FTE+
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTRQYKALMKTEKVGITFTEE 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G+
Sbjct: 362 GIKALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421

Query: 426 FPSETDMYHFIL 437
               TD+  ++L
Sbjct: 422 LARSTDLSRYVL 433


>gi|114800330|ref|YP_760732.1| ATP-dependent protease ATP-binding subunit HslU [Hyphomonas
           neptunium ATCC 15444]
 gi|123027947|sp|Q0C0L1|HSLU_HYPNA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114740504|gb|ABI78629.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomonas neptunium
           ATCC 15444]
          Length = 434

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/433 (55%), Positives = 322/433 (74%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDR+I+GQ  AKRAVAIALRNRWRR+Q P +LR E+ PKNIL++GPTGVG
Sbjct: 3   HLTPREIVAELDRHIVGQNAAKRAVAIALRNRWRRKQAPENLRGEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +SRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ ++RE +R  V + 
Sbjct: 63  KTEVSRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAVGMIREQKRAGVDKA 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           A   AEER+LDALVG  A S+TREVFR+KLR GE+ DKE+D++ ADT++ +   D+PG G
Sbjct: 123 ARDKAEERLLDALVGAEAQSSTREVFRRKLRAGELDDKEVDLDFADTNNPMQMLDLPGQG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            S+ ++NL ++  K MG   ++      +   P L+ +E+D+L+D + + R++I  VE  
Sbjct: 183 GSMSMINLGDMLGKAMGGRTRRVRTTVREAAKP-LVTEEADKLVDEEQIVREAIMAVEED 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTK G++ TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKIAARKDRGGADVSREGVQRDLLPLIEGTTVSTKRGAVKTDHILFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV L+ L + D R IL + +++LI QY+ LM  E + L F +
Sbjct: 302 HVAKPSDLLPELQGRLPIRVELEPLTRDDLRRILVEPQASLIRQYEALMAAENVTLTFED 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
            +ID +AD+A  +N ++ +IGARRLQT++ER+L+DISF A D   +T  I A YV   +G
Sbjct: 362 GAIDRIADMAEAVNKSIENIGARRLQTILERLLDDISFDAPDKGGETFTITASYVDEKVG 421

Query: 425 DFPSETDMYHFIL 437
                 D+  FIL
Sbjct: 422 SLAGNADLSKFIL 434


>gi|89052678|ref|YP_508129.1| ATP-dependent protease ATP-binding subunit HslU [Jannaschia sp.
           CCS1]
 gi|123094441|sp|Q28W08|HSLU_JANSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|88862227|gb|ABD53104.1| heat shock protein HslVU ATPase subunit HslU [Jannaschia sp. CCS1]
          Length = 438

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/438 (56%), Positives = 330/438 (75%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD A  ++RE+ R+EV+ +
Sbjct: 63  KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAQVMIRENMREEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+++AL GK A   TR++FRKKLR GE+ D  I++EVAD S+ +  F+IP   
Sbjct: 123 AHDAAEERVIEALAGKDAREQTRDMFRKKLRAGELDDTVIELEVADNSNPLGGFEIPSQP 182

Query: 184 ----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G   G++NL +LF K MG GR  K R++V   Y  L+ DE+D+L+D +TV ++++ 
Sbjct: 183 GGMGGMGPGMMNLGDLF-KGMG-GRTVKRRLTVAASYDLLIEDEADKLLDAETVTKEALS 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            VE  GIVF+DE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFI
Sbjct: 241 AVEQSGIVFIDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + 
Sbjct: 301 ASGAFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVA 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++FT+  I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D     V +D  +V
Sbjct: 361 VEFTDGGIRALAHIAAEVNESVENIGARRLYTVLERVFEELSFTAPDRSGDAVTVDEAFV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
             ++G+    TD+  ++L
Sbjct: 421 EQNLGELTRSTDLSRYVL 438


>gi|218659909|ref|ZP_03515839.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli IE4771]
          Length = 335

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/328 (72%), Positives = 281/328 (85%), Gaps = 3/328 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRGEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT + +  F+IPG  
Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGTGMGGFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K MG GR KK+R +V+  Y +L+RDESD+LID + + R++++  EN
Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           FHVS+P+DLLPE+QGR P+RV L++LNK
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRALNK 329


>gi|89067411|ref|ZP_01154924.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046980|gb|EAR53034.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
          Length = 433

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/434 (55%), Positives = 328/434 (75%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGPDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDTAIIDTREHMREDVKSR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER++ A+ G+ A   T+E+FRKKL+ G++ D  I++EVADTS+     +IPG  
Sbjct: 123 AHAAAEERVIAAVAGEGAREGTKEMFRKKLKAGDLDDTMIELEVADTSNPF-GMEIPGQP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G   G +NL ++F K  G  R  K RM+V + Y  L+ DE+D+L+D + V + +++ VE 
Sbjct: 182 GMMPG-MNLGDMFGKAFGQ-RTVKKRMTVAESYETLIADEADKLLDDEIVKKAALEAVEQ 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKVCRNSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY+ LM TE + + FT
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVNLRALTEGDFVRILTETDNALTRQYEALMATETVAVSFT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ I ALA +A ++N +V +IGARRL TVMERV E++SF+A D   +TV +DA +V  H+
Sbjct: 360 DEGIAALAKIAADVNESVENIGARRLYTVMERVFEELSFTAPDRGGETVTVDAAFVEEHL 419

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 420 GELTRSTDLSRYVL 433


>gi|119385514|ref|YP_916570.1| ATP-dependent protease ATP-binding subunit [Paracoccus
           denitrificans PD1222]
 gi|166221593|sp|A1B5T0|HSLU_PARDP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119375281|gb|ABL70874.1| heat shock protein HslVU, ATPase subunit HslU [Paracoccus
           denitrificans PD1222]
          Length = 435

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/435 (56%), Positives = 326/435 (74%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDL D A+   RE  RDEV+ +
Sbjct: 63  KTEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMRDEVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A  +AE+R++ AL G+ A   TRE+FR KL+ GE+ DK I++E+ D SS     +IPG  
Sbjct: 123 AHKSAEDRVVAALAGEGAREQTREMFRDKLKRGELDDKVIELELQDNSSPFGMMEIPGQP 182

Query: 186 SV---GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                G+++LS L  K  G GR+ + ++SV + Y  L+ +E+D+L+D + V   +++ V+
Sbjct: 183 GQPMGGMMDLSGLM-KAFG-GRRVRRKLSVAESYDLLIAEEADKLLDDEAVKAAALEAVQ 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 241 ENGIVFIDEIDKVAARTDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TEG+ + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +D I ALA +A  +N +V +IGARRL TV+ERV E++SFSA D   +TVV+DA +V  H
Sbjct: 361 IQDGIRALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSGETVVVDAAFVEKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  ++L
Sbjct: 421 LGDLSRSTDLSRYVL 435


>gi|330813379|ref|YP_004357618.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486474|gb|AEA80879.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 439

 Score =  491 bits (1264), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/433 (57%), Positives = 340/433 (78%), Gaps = 3/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRY+IGQ DAK+AVAIALRNRWRRQ+LP DLR+E++PKNIL+VGPTGVG
Sbjct: 9   SFSPREIVSELDRYVIGQADAKKAVAIALRNRWRRQELPDDLREEVLPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRL++L+ APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV  +
Sbjct: 69  KTEISRRLSKLSEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKEKKRKEVEAK 128

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           + +++EER+LD LVGK+AT  TRE FRK+LR G++ D  I+I V D  S  S F+IPG  
Sbjct: 129 SQLSSEERVLDTLVGKSATPATRESFRKRLRAGDLDDTVIEIAVQDNPSTPS-FEIPGMQ 187

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG++N+ ++F K     +KKK +MSV++ Y  ++++ESD+LID D + +++   VEN 
Sbjct: 188 GGVGMVNIGDIFGKGSAG-KKKKKKMSVKESYEYIIQEESDKLIDQDQIIKEAKFSVENN 246

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ AR   +G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF
Sbjct: 247 GIVFLDEIDKVSARSERSGTDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAF 306

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            +++P+DLLPE+QGR P+RV L+ L K DF  IL + +++LI QY  LMKTE + L FT+
Sbjct: 307 QLAKPSDLLPELQGRLPIRVELQPLTKQDFVRILKEPDNSLIKQYVALMKTENVELQFTD 366

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I+ LA+++  +NST+ +IGARRL T++E+VLE+ISFSA D   + +V+D  +V+ ++G
Sbjct: 367 DGIEELAEISSQINSTIENIGARRLHTILEKVLEEISFSAPDKSGEKIVVDKSFVQKNLG 426

Query: 425 DFPSETDMYHFIL 437
           D   + D+  FIL
Sbjct: 427 DIIKDKDLSKFIL 439


>gi|258542120|ref|YP_003187553.1| ATP-dependent protease ATP-binding subunit HslU [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633198|dbj|BAH99173.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636257|dbj|BAI02226.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639310|dbj|BAI05272.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642366|dbj|BAI08321.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645421|dbj|BAI11369.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648474|dbj|BAI14415.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651527|dbj|BAI17461.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654518|dbj|BAI20445.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 437

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/436 (55%), Positives = 335/436 (76%), Gaps = 7/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+
Sbjct: 65  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERI+DAL G+ ++++T+  FR  LR G++ DKEIDI V + +   S+ D+PG  
Sbjct: 125 ARQAAEERIIDALAGEGSSADTKSKFRSMLRSGQLEDKEIDIAVTEQAPAGSS-DMPGAV 183

Query: 186 SVGILNLSELFSKVMGSG-RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +N+ ++    M  G ++KK+++SV + Y  L R+E+DRL+D + + R+++   +  
Sbjct: 184 PGQAINVGDMMKAFMNRGPKQKKLKVSVAREY--LKREEADRLLDGEALTREAVANAQEN 241

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           GIVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTK+G +NTDHILFIAS
Sbjct: 242 GIVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKHGPVNTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY  LM TEG+ L+
Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLN 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+IDALA++A ++N  V +IGARRL TV+ER+LE++SF+ASD + +TV ++A  V+ 
Sbjct: 362 FTDDAIDALAELAADINDRVENIGARRLATVLERLLEEVSFTASDRKGETVEVNAAMVQE 421

Query: 422 HIGDFPSETDMYHFIL 437
            +     + D+  FIL
Sbjct: 422 KVAPLARKGDLSRFIL 437


>gi|329114128|ref|ZP_08242890.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum
           DM001]
 gi|326696204|gb|EGE47883.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum
           DM001]
          Length = 437

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/436 (55%), Positives = 333/436 (76%), Gaps = 7/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+
Sbjct: 65  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERI+DAL G+ ++++T+  FR  LR G++ DKEIDI V + +   S  ++PG  
Sbjct: 125 AQQAAEERIVDALAGEGSSADTKSKFRSMLRTGQLEDKEIDIAVTEQAPAGSG-EMPGAM 183

Query: 186 SVGILNLSELFSKVMGSG-RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +N+ ++    M  G ++KK+++SV + Y  L R+E+DRL+D + + R+++   +  
Sbjct: 184 PGQAINVGDMMKAFMNRGPKQKKLKVSVAREY--LKREEADRLLDGEALTREAVANAQEN 241

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           GIVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG +NTDHILFIAS
Sbjct: 242 GIVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKYGPVNTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY  LM TEG+ L+
Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLN 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F +D+IDALA++A ++N  V +IGARRL TV+ER+LED+SF+ASD + +TV ++A  V+ 
Sbjct: 362 FADDAIDALAELAADINDRVENIGARRLATVLERLLEDVSFTASDRKGETVEVNAAMVQE 421

Query: 422 HIGDFPSETDMYHFIL 437
            +     + D+  FIL
Sbjct: 422 KVAPLARKGDLSRFIL 437


>gi|91762534|ref|ZP_01264499.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718336|gb|EAS84986.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002]
          Length = 455

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/437 (54%), Positives = 342/437 (78%), Gaps = 4/437 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  + SPREIVSELDRY++GQ  AK+AVAIALRNRWRRQ L  ++++E++PKNIL++GPT
Sbjct: 21  LVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGPT 80

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + +  +R EV
Sbjct: 81  GVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKEV 140

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +A   AEE++LDALVG  A+  TRE FRK+LRDG++ D EI+IEV ++ S  + F+IP
Sbjct: 141 HTKAQKLAEEKVLDALVGNKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAA-FEIP 199

Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           G  GA++G++N+ E+  K +G+ ++KK +M+V++ +  L+ DE+D+LI+ D + + +   
Sbjct: 200 GMPGANIGMINIGEMIGKSVGN-KQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA
Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF +++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L
Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D IDA+A++A  +N+TV +IGARRL T++ER+L+DISF+A+D   + ++ID+ YV+
Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438

Query: 421 LHIGDFPSETDMYHFIL 437
            ++ +   +TD+  FIL
Sbjct: 439 QNLDELVKDTDLSKFIL 455


>gi|126732953|ref|ZP_01748714.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
 gi|126706570|gb|EBA05646.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
          Length = 436

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/435 (56%), Positives = 327/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQQ+AKRAVA+ALRNRWRR+QL   LRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQQEAKRAVAVALRNRWRRKQLTDHLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+ +
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKTR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+R+++A+ GK A S TRE+FRKKL+ GE+    I+++VADTSS     DIPG  
Sbjct: 123 AHAAAEDRVIEAIAGKDARSATREMFRKKLKSGELDQTVIELDVADTSSPFPMMDIPGQP 182

Query: 186 SVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             G +   NL ++F K   +GR  +  M+V + Y  L+ +E+D+L+D +TV   +++ VE
Sbjct: 183 GGGQMGMMNLGDIFGKAF-AGRTTRKSMTVAESYELLITEEADKLLDDETVKTAALEAVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVCARQEARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+LK+L + DF  ILT+T++ L  QY  LM TE + + F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLKALTEGDFVRILTETDNALTRQYTALMATEEVAVSF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I+ALA +A  +N +V +IGARRL TVMERV E++SF+A D   + V +DA++V   
Sbjct: 362 TQEGIEALARIAAEVNGSVENIGARRLYTVMERVFEELSFAAPDKAGEAVTVDADFVEAQ 421

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  ++L
Sbjct: 422 LGDLTRSTDLSRYVL 436


>gi|315497796|ref|YP_004086600.1| heat shock protein hslvu, atpase subunit hslu [Asticcacaulis
           excentricus CB 48]
 gi|315415808|gb|ADU12449.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           excentricus CB 48]
          Length = 432

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/432 (57%), Positives = 327/432 (75%), Gaps = 2/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+IIG  DAK+AVA+ALRNRWRR+Q  A +RDE+ PKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRHIIGHADAKKAVAVALRNRWRRKQTDAAIRDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ AI +V++  R  VR +
Sbjct: 63  KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAILMVKDKSRQGVRAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER+LDALVG  A   TR+ FRK+LR+ E+ DKE++I VADT   I  F+IPG  
Sbjct: 123 AEAQAEERLLDALVGPAAQPATRDSFRKRLRNNELDDKEVEITVADTGGAIGAFEIPGQP 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              I NL E+  K MG GR+K +R++V    P L+ +ESD+L+D D V R+++ + E  G
Sbjct: 183 GNQI-NLGEMLQKAMG-GRQKTVRLTVAAAQPILLSEESDKLLDQDAVSREALSLAEQEG 240

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 241 IVFLDEIDKVASRQERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LM TEG+ L F + 
Sbjct: 301 VAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMATEGVTLAFEDG 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +I  +A  A  +N+ V +IGARRL T++ERV+E++SF+A+D   +TV I A+YVR  +G+
Sbjct: 361 AIAEMAAAAAQVNAKVENIGARRLHTIIERVMEELSFTAADQTGQTVTITADYVRERLGE 420

Query: 426 FPSETDMYHFIL 437
              + D+  +IL
Sbjct: 421 VAGDADLSRYIL 432


>gi|71083041|ref|YP_265760.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062154|gb|AAZ21157.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1062]
          Length = 455

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/437 (54%), Positives = 342/437 (78%), Gaps = 4/437 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  + SPREIVSELDRY++GQ  AK+AVAIALRNRWRRQ L  ++++E++PKNIL++GPT
Sbjct: 21  LVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGPT 80

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + +  +R EV
Sbjct: 81  GVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKEV 140

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +A   AEE++LDALVG  A+  TRE FRK+LRDG++ D EI+IEV ++ S  + F+IP
Sbjct: 141 HAKAQKLAEEKVLDALVGDKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAA-FEIP 199

Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           G  GA++G++N+ E+  K +G+ ++KK +M+V++ +  L+ DE+D+LI+ D + + +   
Sbjct: 200 GMPGANIGMINIGEMIGKSVGN-KQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA
Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF +++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L
Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D IDA+A++A  +N+TV +IGARRL T++ER+L+DISF+A+D   + ++ID+ YV+
Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438

Query: 421 LHIGDFPSETDMYHFIL 437
            ++ +   +TD+  FIL
Sbjct: 439 QNLDELVKDTDLSKFIL 455


>gi|294675591|ref|YP_003576206.1| ATP-dependent hsl protease ATP-binding subunit HslU [Rhodobacter
           capsulatus SB 1003]
 gi|294474411|gb|ADE83799.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter
           capsulatus SB 1003]
          Length = 433

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/432 (55%), Positives = 317/432 (73%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRRQ+L  ++R+E+ PKNIL++GPTGVG
Sbjct: 3   SLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRQRLSPEMREEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVDVA+   RE  R+EV+ +
Sbjct: 63  KTEISRRLAKLAKAPFLKVEATKFTEVGYVGRDVEQIIRDLVDVAMVETRERMREEVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+R+++ L G  A   TRE+FR+KLRDGE+ DK+I+IEVA+T+S         G 
Sbjct: 123 AHKAAEDRVIEVLAGTDAREQTREMFRRKLRDGELDDKQIEIEVAETASAPQMMMGNPGM 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            + +  L +LF K  G  RK + +MSV + Y  L+ +E+D+L+D + V   +++ V   G
Sbjct: 183 ELQMQGLQDLF-KAFGGARKTRRKMSVAESYEVLISEEADKLLDDEAVKTAALEAVSQSG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 242 IVFLDEIDKVAARAETRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L+ L + DF  ILT+T++ L  QY  LM TE + + FT +
Sbjct: 302 IAKPSDLLPELQGRLPIRVELRPLTEEDFVRILTETDNALTRQYTALMATEEVTVSFTPE 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     V +DA +V  H+G 
Sbjct: 362 GIAALARIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGDQVTVDAAFVERHLGS 421

Query: 426 FPSETDMYHFIL 437
                D+  ++L
Sbjct: 422 LAQSADLSRYVL 433


>gi|262277814|ref|ZP_06055607.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium
           HIMB114]
 gi|262224917|gb|EEY75376.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium
           HIMB114]
          Length = 439

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/434 (55%), Positives = 342/434 (78%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR++IGQ +AKRAVAIALRNRWRRQ+LP ++R+E++PKNIL++GPTGVG
Sbjct: 9   SFSPREIVSELDRFVIGQSEAKRAVAIALRNRWRRQELPEEIREEVLPKNILMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRL++LA APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV  +
Sbjct: 69  KTEISRRLSKLAEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKERKRKEVLTK 128

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           A ++AEER+L+ LVGK A+  T+E +RK+LR G++ + EI+I V D S  + +FDIPG  
Sbjct: 129 AQMSAEERVLEVLVGKNASGATKESYRKRLRAGDLDNNEIEISVQD-SPQMPSFDIPGMQ 187

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            SVG++++ ++F K M    KKK +M+V++ Y  L+ +ESD+L+D D V +++    EN 
Sbjct: 188 GSVGMVSIGDIFGKGMTK--KKKKKMTVKESYDYLIEEESDKLMDNDQVLKEAKFAAENN 245

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVFLDE DK+ AR  G +G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGA
Sbjct: 246 GIVFLDEIDKVSARSDGRSGADVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGA 305

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           F +++P+DLLPE+QGR P+RV L +L K DF  IL + +++LI QY  L+ TE + L+FT
Sbjct: 306 FQLAKPSDLLPELQGRLPIRVELNALTKEDFIKILKEPDNSLIKQYTALLGTEKVTLEFT 365

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+I+A+A+++ ++NST+ +IGARRL T++E++L+DISF A D   + V+I+  YV  H+
Sbjct: 366 DDAIEAIAEISTHINSTIENIGARRLHTILEKILDDISFDAPDKSGEKVLINKAYVDKHL 425

Query: 424 GDFPSETDMYHFIL 437
           GD   + D+  FIL
Sbjct: 426 GDIAKDKDLSKFIL 439


>gi|254438704|ref|ZP_05052198.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 307]
 gi|198254150|gb|EDY78464.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 307]
          Length = 434

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/433 (55%), Positives = 325/433 (75%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQSDAKRAVAVALRSRWRRRQLDDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI   R+  RD+V+++
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMRDDVKQK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           A   AE R++DA+ GK A   TR++FRKKL+ GE+ +  I++E+AD S+ + N +IPG  
Sbjct: 123 AQEAAEARVIDAIAGKDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGNMEIPGQP 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            ++G ++L  +F K  G  R  K R++V + Y  L+ DE+D+L+D +TV + ++  VE  
Sbjct: 183 PTLGGMDLGAMFGKAFGP-RTMKKRVTVSESYALLIADEADKLLDDETVTKIALDSVEQN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F+E
Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEDVTVSFSE 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TVMERV ED+SF+A D     + ++A +V  H+G
Sbjct: 362 DGIAALAHIAAEVNESVENIGARRLYTVMERVFEDLSFNAPDRGGDEIEVNAAFVEQHLG 421

Query: 425 DFPSETDMYHFIL 437
           +    TD+  ++L
Sbjct: 422 ELARSTDISRYVL 434


>gi|57239496|ref|YP_180632.1| ATP-dependent protease ATP-binding subunit HslU [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579476|ref|YP_197688.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58617530|ref|YP_196729.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|57161575|emb|CAH58503.1| ATP-dependent hsl protease ATP-binding subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417142|emb|CAI28255.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia
           ruminantium str. Gardel]
 gi|58418102|emb|CAI27306.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 488

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/434 (53%), Positives = 333/434 (76%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++I  ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR++++PKNIL++G TGVGK
Sbjct: 56  LTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREDIIPKNILMIGHTGVGK 115

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E  R  V+++A
Sbjct: 116 TEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKERFRKAVQKKA 175

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
              +E  ILDAL+G  A+  T+ +F++KL++GE  + EI I + ++ S I   D+P   G
Sbjct: 176 KDLSENIILDALIGSDASQETKTIFQEKLKNGEFENSEISISIKESKSPIPPIDVPNIPG 235

Query: 185 ASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           + VG++N+SE+  K++G+ ++ K ++++V++    L+ +ES++LID D + ++++Q+  N
Sbjct: 236 SQVGVMNISEIVHKMLGNNKQLKTVKVTVKEARELLINEESEKLIDEDKIVKEALQLASN 295

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASGA
Sbjct: 296 DGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASGA 354

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +DFT
Sbjct: 355 FHLAKPSDLLPELQGRLPIRVELKPLSKDDLIRILTEPESSLLKQYCALMKTENITIDFT 414

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ +  +AD+A  +N  V +IGARRL T++E+++EDIS++A++   KT VID+EYV+  +
Sbjct: 415 DEGVSTIADIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVKKKL 474

Query: 424 GDFPSETDMYHFIL 437
            +   + D+  FIL
Sbjct: 475 ENISKQLDLSKFIL 488


>gi|254455698|ref|ZP_05069127.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082700|gb|EDZ60126.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 457

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/431 (54%), Positives = 338/431 (78%), Gaps = 3/431 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREIVSELDR+++GQ  AK+AVA+ALRNRWRRQ L  ++++E++PKNIL++GPTGVGKT 
Sbjct: 28  PREIVSELDRFVVGQNKAKKAVAVALRNRWRRQALTGEMKNEVLPKNILMIGPTGVGKTE 87

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ISRRL++LA APF+KVE T+FTE+GYVGR+VEQI+RDL+++AI++ +   R  V  QA  
Sbjct: 88  ISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIVRDLIEIAISMEKVKMRKGVHAQAQK 147

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GAS 186
            AEE++LDALVGK A+  TRE FRK+LR+G++ D EI+I V+DT S  ++F+IPG  GA+
Sbjct: 148 AAEEKVLDALVGKKASLATRESFRKRLRNGDLDDNEIEIAVSDTGSGNTSFEIPGMPGAN 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           VG++N+ E+  K MG+ ++KK +M+V++ +  L+ DESD+LI+ D + + +    EN GI
Sbjct: 208 VGMINIGEMIGKSMGN-KEKKKKMTVKESHEILINDESDKLIEQDKIVKAAKLSTENNGI 266

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF +
Sbjct: 267 VFLDEVDKISARTDRVGGDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAFQL 326

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L+F++D 
Sbjct: 327 AKPSDLLPELQGRLPIRVELEALTSEDFKRILREPDFSLIKQYVALLKTENVELEFSDDG 386

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDA+A++A  +N+TV +IGARRL T++E++L++ISF+A+D   + ++I+ EY+  ++ + 
Sbjct: 387 IDAIANIASEVNTTVENIGARRLHTIIEKILDEISFTATDRSGEKIIINKEYIDKNLDNL 446

Query: 427 PSETDMYHFIL 437
             +TD+  FIL
Sbjct: 447 IKDTDLSKFIL 457


>gi|73667418|ref|YP_303434.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str.
           Jake]
 gi|72394559|gb|AAZ68836.1| Heat shock protein HslU [Ehrlichia canis str. Jake]
          Length = 492

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P++I   LDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G TG
Sbjct: 57  TQELTPQQITQALDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTG 116

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           +GKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E  R  V 
Sbjct: 117 IGKTEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKEKFRKIVE 176

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           ++A   +E  ILDAL+G  A+  T+ +F++KLR+GE  D EI I + ++ + +   DIP 
Sbjct: 177 KKAKALSESMILDALIGPDASEETKTIFQEKLRNGEFEDSEISISIKESKNTMPPIDIPN 236

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G  VGI+N++E+  K++G+ ++ K I+++V++    L+ +ES++L+D D + ++++Q+
Sbjct: 237 IPGNQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKEALQL 296

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIA
Sbjct: 297 ASNDGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIA 355

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +
Sbjct: 356 SGAFHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITI 415

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFT++ +  +A++A  +N  V +IGARRL T++E+++EDIS++A++   KT VID+EYV+
Sbjct: 416 DFTDEGVCTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVK 475

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 476 QKLEDISKQLDLSKFIL 492


>gi|254451571|ref|ZP_05065008.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 238]
 gi|198265977|gb|EDY90247.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 238]
          Length = 434

 Score =  481 bits (1238), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/433 (54%), Positives = 323/433 (74%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI   R+  R++V+++
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMREDVKQK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE R++DA+ G  A   TR++FRKKL+ GE+ +  I++E+AD S+ +   +IPG  
Sbjct: 123 AQEAAEARVIDAIAGTDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGGMEIPGQP 182

Query: 186 -SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G ++LS +F K  G+ R  K R++V + Y  L+ DE+D+L+D +TV + +++ VE  
Sbjct: 183 PGMGGMDLSAMFGKAFGA-RTVKKRVTVSESYALLVADEADKLLDDETVTKIALESVEQN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F+E
Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEEVTVSFSE 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N ++ +IGARRL TVMERV ED+SF+A +     + + A +V  H+G
Sbjct: 362 DGIAALARIAAEVNESIENIGARRLYTVMERVFEDLSFNAPERGGDEIEVSAAFVEEHLG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  ++L
Sbjct: 422 ALARSTDLSRYVL 434


>gi|114762242|ref|ZP_01441710.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114545266|gb|EAU48269.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
           HTCC2601]
          Length = 436

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/435 (55%), Positives = 329/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQQDAKRAV++ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQQDAKRAVSVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE  R++V+  
Sbjct: 63  KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIALTREHMREDVKAA 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER+++A+ G  A  +TRE+FRKKLR+GE+   EI+++VA+T+S     +IPG  
Sbjct: 123 AHKAAEERVIEAIAGTDARESTREMFRKKLRNGELDGTEIELDVAETASPFPMMEIPGQP 182

Query: 186 SVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             G +   NLSE+F K  G GR  + +++V + Y  L+++E+D+L+D + V + +++ VE
Sbjct: 183 GQGGMGMMNLSEMFGKAFG-GRTTRKKLTVAESYEILIQEEADKLLDDEVVKKAALEAVE 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 242 QNGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + ++F
Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVTVEF 361

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     + +D  +V  +
Sbjct: 362 TEDGIHALARIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGDKITVDDAFVETY 421

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 422 LGELTRSADLSRYVL 436


>gi|162149054|ref|YP_001603515.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787631|emb|CAP57227.1| putative ATP-dependent hsl protease ATP-binding subunit hslU
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 329/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL   LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE R++DALVG+ A+++T+  FR+ LR+GE+ +KE++I +ADT +  S  D+    
Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGSMGDMGNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S  ++N S++   +M    +++ RM+V      L R+E+D+++D D +  +++   +++G
Sbjct: 185 SGTVINFSDMMKGLMNRVPQRR-RMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L  L + D R ILT+ E +L+ QY  L+ TEG+ L+F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++D++DALA++A ++N  + +IGARRL TV+ER+LE++SF+ASD   + V I A  V+  
Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|209545199|ref|YP_002277428.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532876|gb|ACI52813.1| heat shock protein HslVU, ATPase subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 438

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/435 (53%), Positives = 328/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL   LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE R++DALVG+ A+++T+  FR+ LR+GE+ +KE++I +ADT +     D+    
Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGGMGDMGNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S  ++N S++   +M    +++ RM+V      L R+E+D+++D D +  +++   +++G
Sbjct: 185 SGTVINFSDMMKGLMNRVPQRR-RMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L  L + D R ILT+ E +L+ QY  L+ TEG+ L+F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++D++DALA++A ++N  + +IGARRL TV+ER+LE++SF+ASD   + V I A  V+  
Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|296283400|ref|ZP_06861398.1| ATP-dependent protease ATP-binding subunit HslU [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/433 (54%), Positives = 321/433 (74%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPTG G
Sbjct: 4   TLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPTGCG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ VRE 
Sbjct: 64  KTEISRRLARLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAVRES 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           AS  A ER+LDALVG  A+  TR+ FR+++    ++D E++IEV D  +  +  DIPG G
Sbjct: 124 ASEAAMERLLDALVGDNASEATRQSFRERITQNAMNDVEVEIEVQDQPA--TTMDIPGMG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +VG+++LS++F K MG     + ++ V + +  L+ +E+++ +D D V R ++Q  E  
Sbjct: 182 GNVGMIDLSDMFGKAMGKKPTSRRKLRVPEAWDRLVDEEAEKRMDQDDVARVALQNAETN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGAF
Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKHGPMKTDHVLFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+D+LPE+QGR P+RV L++L + DF  IL++T +NL+ QY  L+ TE + LD T+
Sbjct: 301 HVSKPSDMLPELQGRLPIRVELRALTEEDFVRILSETRANLVQQYTALIGTEKVTLDITD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++  +A +A  +N  V +IGARRLQTVMER++EDISF A + + +TV IDA YV   + 
Sbjct: 361 EAVREVAKIAAQVNEAVENIGARRLQTVMERLVEDISFEAEEHEGETVTIDAAYVHERLD 420

Query: 425 DFPSETDMYHFIL 437
           D   +TD+  +IL
Sbjct: 421 DLARDTDLSKYIL 433


>gi|85372871|ref|YP_456933.1| ATP-dependent protease ATP-binding subunit HslU [Erythrobacter
           litoralis HTCC2594]
 gi|84785954|gb|ABC62136.1| ATP-dependent protease HslVU ATPase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 433

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/436 (53%), Positives = 328/436 (75%), Gaps = 4/436 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRR QL A+LRDE+ PKNIL++GPT
Sbjct: 1   MTEALTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRLQLGAELRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ V
Sbjct: 61  GCGKTEISRRLAKLAEAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A ER+LDALVG  A+  TRE FR+++    ++D E+++EV+D+ S     +IP
Sbjct: 121 REAASTAAMERLLDALVGDNASEATRESFRERVVQNAMNDVEVEVEVSDSPS--MPMEIP 178

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G G +VG+++LS++  K +G   KK+ ++ V   + +L+ +E+++ +D D V R +++  
Sbjct: 179 GLGGNVGMIDLSDMMGKALGRNNKKRRKLKVPDAWDKLVEEEAEKRMDQDDVSRVALENA 238

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIAS
Sbjct: 239 ETNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKHGPMKTDHVLFIAS 297

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+D+LPE+QGR P+RV L++L   DF  IL++T +NL+ QYK L+ TE + ++
Sbjct: 298 GAFHVSKPSDMLPELQGRLPIRVELRALEIEDFVRILSETRANLVEQYKALLGTEDVTVE 357

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            T+D+I  +A +A  +N +V +IGARRLQTVMER+LE++SF A + + +T+VIDA YV+ 
Sbjct: 358 ITDDAIREVATIAAQVNESVENIGARRLQTVMERLLEELSFEAEEHKGETIVIDAAYVKD 417

Query: 422 HIGDFPSETDMYHFIL 437
            + +   ++D+  +IL
Sbjct: 418 KLSELAEDSDLSKYIL 433


>gi|68171727|ref|ZP_00545080.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657724|ref|YP_507784.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|67998849|gb|EAM85548.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599181|gb|ABD44650.1| heat shock protein HslVU, ATPase subunit HslU [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 487

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/434 (53%), Positives = 329/434 (75%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++I  ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G TG+GK
Sbjct: 55  LTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTGIGK 114

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+ +E  R  V  +A
Sbjct: 115 TEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLEKEKSRKFVETKA 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
              AE  IL+ALVG  A+  T+ +F++KLR+GE  + EI I + ++ + I + DIP   G
Sbjct: 175 KSLAENIILEALVGADASQETKTIFQEKLRNGEFENFEISISIKESKNAIPSIDIPNIPG 234

Query: 185 ASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             VGI+N++E+  K++G+ ++ K I+++V++    L+ +ES++L+D D + +D++ +  N
Sbjct: 235 NQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKDALLLASN 294

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASGA
Sbjct: 295 DGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASGA 353

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +DFT
Sbjct: 354 FHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITIDFT 413

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++ +  +A++A  +N  V +IGARRL T++E+++EDIS++A++   +T VID+EYV+  +
Sbjct: 414 DEGVSTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGRTYVIDSEYVKKKL 473

Query: 424 GDFPSETDMYHFIL 437
            D   + D+  FIL
Sbjct: 474 EDIAKQLDLSKFIL 487


>gi|295691591|ref|YP_003595284.1| heat shock protein ATPase subunit HslU [Caulobacter segnis ATCC
           21756]
 gi|295433494|gb|ADG12666.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter segnis
           ATCC 21756]
          Length = 430

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/431 (57%), Positives = 336/431 (77%), Gaps = 4/431 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDRYI+G  DAK+AVA+ALRNRWRR++ PAD+RDEL PKNILL+GPTGVGK
Sbjct: 4   FSPREIVSELDRYIVGHTDAKKAVAVALRNRWRRRRAPADIRDELTPKNILLIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR  V+ +A
Sbjct: 64  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVRDKRRAAVKAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AEERILDAL G  +T+  RE FRKK+R GE+ DKE+++++ADT      F+IPG   
Sbjct: 124 EGAAEERILDALTGPGSTA-AREAFRKKIRAGELDDKEVELQLADTGG--QTFEIPGQPG 180

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
             + NLS++  K  G GR+K  + +V   +  L+ +ESD+L+D + + ++++++ EN+GI
Sbjct: 181 AAVFNLSDMM-KSFGGGRQKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENHGI 239

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DK+ +    +G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFHV
Sbjct: 240 VFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFHV 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NL+ Q++ LM TE + L FT+++
Sbjct: 300 AKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLVRQHQALMATENVTLVFTDEA 359

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDALAD AV +N++V +IGARRLQT++E+V+E+ISF+A+D   +TV +DA YV+  +G  
Sbjct: 360 IDALADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRGGETVTVDAAYVQERVGAL 419

Query: 427 PSETDMYHFIL 437
            +  D+  FIL
Sbjct: 420 AANADLSRFIL 430


>gi|255003419|ref|ZP_05278383.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Puerto Rico]
 gi|255004539|ref|ZP_05279340.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Virginia]
          Length = 480

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 45  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 104

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 105 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 164

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 165 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 464 EKLEDISKQMDLSKFIL 480


>gi|56417066|ref|YP_154140.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222475432|ref|YP_002563849.1| heat shock protein (hslU) [Anaplasma marginale str. Florida]
 gi|56388298|gb|AAV86885.1| heat shock protein [Anaplasma marginale str. St. Maries]
 gi|222419570|gb|ACM49593.1| heat shock protein (hslU) [Anaplasma marginale str. Florida]
          Length = 482

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 47  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 106

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 107 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 166

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 167 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 226

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 227 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 286

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 287 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 345

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 346 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 405

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 406 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 465

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 466 EKLEDISKQMDLSKFIL 482


>gi|296116619|ref|ZP_06835229.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976831|gb|EFG83599.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 438

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QLP  LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLPEGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRDLRRRDVQAK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE  +LDALVG+ A+++TR  FR+ LR+G++  KE++I V +  S     D+P   
Sbjct: 125 AEMAAENSLLDALVGEGASADTRNKFRRMLRNGDLETKEVEISVTEGPSPSGQADMPNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              ++N S++    M    +++ RM+V +    L R+E+D+++D +T+ R+++   +++G
Sbjct: 185 PGTVINFSDMMKGFMNRVPQRR-RMTVAEARAALTREEADKMLDTETLTREAVAHAQDHG 243

Query: 246 IVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR +  G     VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARGAEGGARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY  L+ TE + L F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELSSLTRQDLRRILTEPEHSLLTQYIALLGTEKVTLRF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++DALA++A ++N  V +IGARRL TV+ER+LE++SF+A+D   ++V I A  V+  
Sbjct: 364 TDDAVDALAELAADINERVENIGARRLATVIERLLEEVSFTATDRAGQSVEITAADVQEK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|197103501|ref|YP_002128878.1| heat shock protein HslU [Phenylobacterium zucineum HLK1]
 gi|238690142|sp|B4RBI9|HSLU_PHEZH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|196476921|gb|ACG76449.1| heat shock protein HslU [Phenylobacterium zucineum HLK1]
          Length = 434

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/433 (59%), Positives = 342/433 (78%), Gaps = 4/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+G  +AKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIVGHPEAKRAVAVALRNRWRRRRVPDDLRDEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ AI +VRE RR  VR +A
Sbjct: 64  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESAIQMVREKRRAAVRARA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
              AEERILDAL G  +T+  RE FR+KLR GE+ DKE+++++ADTSS     DIPG  G
Sbjct: 124 EAAAEERILDALTGPGSTA-AREAFRRKLRAGELDDKEVELQLADTSSPFGAMDIPGQPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           AS+G+LNL ++F K  G GR K  + +V   +  L+ +ESD+L+D + + ++++++ EN 
Sbjct: 183 ASMGVLNLGDMFGKAFG-GRTKTHKTTVSGAWVPLIAEESDKLVDQEALTQEALELAENQ 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKVASRQDRAGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L++ D R ILT+ E+NLI Q++ L+ TEG+ L FTE
Sbjct: 302 HVAKPSDLLPELQGRLPIRVELKALSRQDMRRILTEPEANLIRQHQALLATEGVTLTFTE 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD AV +N +V +IGARRLQT++E+VLE++SF+A+D   +T+ +DA YV   IG
Sbjct: 362 DAIDALADAAVAVNGSVENIGARRLQTILEKVLEEVSFTAADRDGETITVDAAYVNGRIG 421

Query: 425 DFPSETDMYHFIL 437
           D     D+  FIL
Sbjct: 422 DLAGNADLSKFIL 434


>gi|152998996|ref|YP_001364677.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS185]
 gi|166221607|sp|A6WIH5|HSLU_SHEB8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|151363614|gb|ABS06614.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS185]
          Length = 442

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/441 (53%), Positives = 315/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             +AEERILDAL+ K           ++SNTR+VFRKKLR+G++ DKEIDI+VA     +
Sbjct: 124 EEHAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQIGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMNTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F+E  ID++A  A  +N    +IGARRL TVME+++EDIS+ AS+      VIDA
Sbjct: 362 GVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|330993964|ref|ZP_08317894.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp.
           SXCC-1]
 gi|329758910|gb|EGG75424.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp.
           SXCC-1]
          Length = 437

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/439 (54%), Positives = 323/439 (73%), Gaps = 13/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDRYIIGQ DAKRAVAIALRNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRYIIGQTDAKRAVAIALRNRWRRAQLTDAMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++RE RR +V  +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRELRRRDVEVK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNFDI 181
           A   AE  +LDALVG+ A++ TR  FR+ LR GE+  KE++I +A+ S     D+S+   
Sbjct: 125 AEGAAENILLDALVGEGASAETRNKFRRMLRAGELEGKEVEISIAEGSGPAQPDMSSM-T 183

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           PG     ++N S++    M    ++K RM+V +    L R E+D+++D + + R+++   
Sbjct: 184 PG----AVINFSDMMKGFMNRMPQQK-RMTVAEARAALTRQEADKMLDTEALTREAVAHA 238

Query: 242 ENYGIVFLDEFDKIVARDS---GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           +++GIVFLDE DK+ AR S     G  VSREGVQRDLLPL+EG++VSTKYG + TDHILF
Sbjct: 239 QDHGIVFLDEIDKVCARASEGGSRGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILF 298

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY  L+ TE +
Sbjct: 299 IASGAFHIAKPSDLLPELQGRLPIRVELASLTRDDLRRILTEPEHSLLQQYIALLGTEKV 358

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+ +IDALA++A ++N  V +IGARRL TV+ER+LE +SF+A D   ++VVIDA  
Sbjct: 359 TLSFTDAAIDALAELAADINERVENIGARRLATVLERLLESVSFTAPDRSGQSVVIDAAD 418

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +    S+ D+  FIL
Sbjct: 419 VQEKVAPLASKGDLSRFIL 437


>gi|16127958|ref|NP_422522.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus
           CB15]
 gi|221236780|ref|YP_002519217.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter
           crescentus NA1000]
 gi|22653796|sp|Q9A238|HSLU_CAUCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802301|sp|B8GW06|HSLU_CAUCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|13425498|gb|AAK25690.1| heat shock protein HslU [Caulobacter crescentus CB15]
 gi|220965953|gb|ACL97309.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Caulobacter crescentus NA1000]
          Length = 430

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/431 (58%), Positives = 338/431 (78%), Gaps = 4/431 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDRYI+G  +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGVGK
Sbjct: 4   FSPREIVSELDRYIVGHAEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VRE RR  V+ +A
Sbjct: 64  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVREKRRAAVKAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AEERILDAL G  +T+  RE FRKKLR GE+ DKE+++++ADT     +FDIPG   
Sbjct: 124 EGGAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADTGG--PSFDIPGQPG 180

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
             + NLS++  K +G GR K  + +V   +  L+ +ESD+L+D + + ++++++ EN+GI
Sbjct: 181 AAVFNLSDMM-KSLGGGRTKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENHGI 239

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DK+ +    +G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFHV
Sbjct: 240 VFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFHV 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DLLPE+QGR P+RV LK L++ D R ILT+ E+NLI Q++ LM TE + L FT+++
Sbjct: 300 AKPSDLLPELQGRLPIRVELKGLSRDDMRRILTEPEANLIRQHQALMATEEVTLVFTDEA 359

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDALAD AV +N +V +IGARRLQTVME+V+E+ISF+A+D   +TV IDA YV+  +G  
Sbjct: 360 IDALADAAVAVNGSVENIGARRLQTVMEKVVEEISFTAADRGGETVTIDAAYVQERVGAL 419

Query: 427 PSETDMYHFIL 437
            +  D+  FIL
Sbjct: 420 AANADLSRFIL 430


>gi|126176059|ref|YP_001052208.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS155]
 gi|160873586|ref|YP_001552902.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS195]
 gi|217971678|ref|YP_002356429.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS223]
 gi|304411507|ref|ZP_07393120.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS183]
 gi|307306717|ref|ZP_07586459.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           BA175]
 gi|166221606|sp|A3D9C6|HSLU_SHEB5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043919|sp|A9KYP8|HSLU_SHEB9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802317|sp|B8E6E3|HSLU_SHEB2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|125999264|gb|ABN63339.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS155]
 gi|160859108|gb|ABX47642.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS195]
 gi|217496813|gb|ACK45006.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS223]
 gi|304350034|gb|EFM14439.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS183]
 gi|306910685|gb|EFN41114.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           BA175]
 gi|315265814|gb|ADT92667.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS678]
          Length = 442

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/441 (52%), Positives = 315/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL  D R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TK+TE+GYVG+ VEQIIRDL D+AI + RE +  + R++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKYTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             NAEERILDAL+ K           ++SNTR+VFRKKLR+G++ DKEIDI+VA     +
Sbjct: 124 EENAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDHI
Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLIEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L+ +DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSANDFKRILTEPHASLTEQYIALMNTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F+E  ID++A  A  +N    +IGARRL TVME+++EDIS+ AS+      VIDA
Sbjct: 362 GVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|302381136|ref|YP_003816959.1| heat shock protein HslVU, ATPase HslU [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191764|gb|ADK99335.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 433

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/432 (58%), Positives = 335/432 (77%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL+G+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR++RR  VR +
Sbjct: 63  KTEIARRLARLSGSPFLKVEATKFTEVGYVGRDVDQIMRDLVEAALLMVRDARRAGVRAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERILDALVG  +   TR+ FRKKLR GE+ DKEI++++ADT+S I   D+ GG 
Sbjct: 123 AEAAAEERILDALVGPGSQPATRDAFRKKLRAGEMDDKEIELQLADTASPIQGLDVGGGG 182

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           +VG+LNLS++  K +G GR K +R +V+     L+ +ESD+L+D D++ R+++ + EN G
Sbjct: 183 NVGLLNLSDMLGK-LGGGRTKSVRTTVRDALQPLLAEESDKLLDQDSLTREALLLAENEG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+  R    G  VSREGVQRDLLPL+EG++VSTKYG + +DH+LFIASGAFH
Sbjct: 242 IVFIDEIDKVAGRQDRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKSDHVLFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DF  ILT+ E+NLI Q + L+ TE + L FT D
Sbjct: 302 VAKPSDLLPELQGRLPIRVELKALTRDDFVRILTEPEANLIRQNQALLATEDVTLTFTPD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +++ALAD AV  N  V +IGARRL TV+ERVLE+ SF ASDL  +TV  D + VR  + +
Sbjct: 362 AVEALADAAVAANGAVENIGARRLVTVIERVLEETSFKASDLSGQTVAFDGDAVRGKVAE 421

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 422 LAKNADLSRFIL 433


>gi|114328901|ref|YP_746058.1| ATP-dependent protease ATP-binding subunit HslU [Granulibacter
           bethesdensis CGDNIH1]
 gi|114317075|gb|ABI63135.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Granulibacter bethesdensis CGDNIH1]
          Length = 438

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/435 (54%), Positives = 330/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            +SPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP  +R+E++PKNIL++GPTG G
Sbjct: 5   TYSPREIVSELDRFIVGQTDAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ ++R++ R  V+ Q
Sbjct: 65  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEASLTMLRDTSRRNVQAQ 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AEER+L ALVG+ A ++TR  FR+ LR+GE+ +KEI+I +A   S   + DIPG  
Sbjct: 125 AELAAEERLLTALVGEGAAADTRSHFRRMLRNGELEEKEIEISIAAAPSAPPSVDIPGVP 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
               +NL+E+   + G+ R+++ +++V      L R+E+DRL+D D + RD+++  EN G
Sbjct: 185 PGQAINLTEMMKGMFGN-RQQQKKLTVAAARELLQREEADRLLDNDKLGRDAVEHAENNG 243

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVF+DE DK+ AR +  G+    +SREGVQRDLLP++EG++V+TKYG + TDHILFIASG
Sbjct: 244 IVFIDEIDKVCARSTEGGMRGGDISREGVQRDLLPIIEGTTVNTKYGPVKTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L+ L+++D R IL + E +L+ QY+ L+ TE + LD 
Sbjct: 304 AFHLAKPSDLLPELQGRLPIRVELQPLSRADMRRILVEPEHSLLKQYQALLGTEQVDLDI 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD+A  +N  V +IGARRL TV+E++LEDISF+A+D   + V +DA  VR  
Sbjct: 364 TDDAIDALADLAAEINDRVENIGARRLHTVLEKLLEDISFTAADRAGELVTVDAALVRDR 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLAGKADLSRFIL 438


>gi|167649007|ref|YP_001686670.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter sp.
           K31]
 gi|189043906|sp|B0T7A8|HSLU_CAUSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167351437|gb|ABZ74172.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter sp. K31]
          Length = 431

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/432 (58%), Positives = 339/432 (78%), Gaps = 3/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYI+G  +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGVG
Sbjct: 3   EFSPREIVSELDRYIVGHTEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+++VR+ RR  V+ +
Sbjct: 63  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALSMVRDKRRGGVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERILDAL G  +T+  RE FRKKLR GE+ DKE+++++ADT      F+IPG  
Sbjct: 123 AEAAAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADTGGG-GMFEIPGQP 180

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +LNLSE+  K  G GR K  + +V   +  L+ +ESD+L+D + + ++++++ EN+G
Sbjct: 181 GASVLNLSEMM-KSFGGGRTKTHKTTVVGAWAPLIAEESDKLLDQEALTQEALELAENHG 239

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ +     G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 240 IVFLDEIDKVASSSQRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NLI Q++ L+ TEG+ L FTE+
Sbjct: 300 VAKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLIRQHQALLLTEGVTLVFTEE 359

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +IDA+AD AV +N++V +IGARRLQT++E+V+E+ISF+A+D   +TV +DA+YV+  IG 
Sbjct: 360 AIDAVADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRSGETVTVDADYVQARIGA 419

Query: 426 FPSETDMYHFIL 437
             +  D+  FIL
Sbjct: 420 LAANADLSRFIL 431


>gi|85710347|ref|ZP_01041412.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
 gi|85689057|gb|EAQ29061.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
          Length = 433

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/436 (53%), Positives = 325/436 (74%), Gaps = 4/436 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPT
Sbjct: 1   MTDNLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD V
Sbjct: 61  GCGKTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDSV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A ER+L ALVG  A+  TRE FR+++    ++D E++I+V + S+  + FD+ 
Sbjct: 121 REAASEAAMERLLTALVGDNASEATRESFRQRITQNAMNDVEVEIDVVEASN--TPFDMG 178

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++ +++LS++  K  G    KK ++ V   + +L+ +E+D+ +D D V + +++  
Sbjct: 179 NMGGNMQMIDLSDMMGKAFGKKPTKKRKLRVPDAWDKLVDEEADKRLDDDDVAQTALRNA 238

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIAS
Sbjct: 239 ETNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIAS 297

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHV++P+D+LPE+QGR P+RV+L++L + DF  IL++T +NL+ QY+ L+ TE + LD
Sbjct: 298 GAFHVAKPSDMLPELQGRLPIRVNLRALTQEDFVRILSETRANLVEQYRALIGTEKVELD 357

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
             +++ID +A +A  +N +V +IGARRLQTVME++LE+ISF A + + +T+ IDA YVR 
Sbjct: 358 IKKEAIDEVATIAAQVNESVENIGARRLQTVMEKLLEEISFEAEEHEGETITIDAAYVRE 417

Query: 422 HIGDFPSETDMYHFIL 437
            +GD   + D+  +IL
Sbjct: 418 RLGDLAGDADLSKYIL 433


>gi|254995241|ref|ZP_05277431.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Mississippi]
          Length = 480

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/437 (53%), Positives = 330/437 (75%), Gaps = 5/437 (1%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 46  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 105

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 106 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 165

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A S  +  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 166 KQARKSSEEIILNCLVGVDA-SEAKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 464 EKLEDISKQMDLSKFIL 480


>gi|114045943|ref|YP_736493.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           MR-7]
 gi|123326942|sp|Q0HZL9|HSLU_SHESR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113887385|gb|ABI41436.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-7]
          Length = 442

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/441 (52%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             +AEERILDAL+ K           A SNTR++FRKKLR+G++ DKEIDI+VA     I
Sbjct: 124 EEHAEERILDALLPKPKNDWDSTDSDANSNTRQIFRKKLREGQLDDKEIDIDVAQPQVGI 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F E  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VIDA
Sbjct: 362 GVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|89093515|ref|ZP_01166463.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
 gi|89082205|gb|EAR61429.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
          Length = 444

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/444 (52%), Positives = 321/444 (72%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDR+IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVSELDRHIIGQDEAKRSVAIALRNRWRRMQLDEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD+AI ++RE   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVETIIRDLVDMAIKMMREQEMEKVRFR 122

Query: 126 ASINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEER+LDAL+             K+  S TR+VFRKKLR+G++ DKEIDIE+A   
Sbjct: 123 AEEAAEERVLDALLPPARPTGFGEEPAKSEDSATRQVFRKKLREGQLDDKEIDIEIAQPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +FS  MG G+K++ RM ++  +  L  +E+  L+  D +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQSMFSG-MGGGKKQQRRMKIKDAFKMLTDEEAANLVKEDEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++++VE +GIVFLDE DK+    S +   VSREGVQRDLLPL+EG +VSTKYG + T
Sbjct: 241 KQNAVELVEQHGIVFLDEIDKVCKGGSNSSGDVSREGVQRDLLPLIEGCTVSTKYGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+++P+DL+PE+QGR P+RV L +L   DFR IL +  ++L  QY+ L+
Sbjct: 301 DHILFIASGAFHLAKPSDLIPELQGRLPIRVELNALTPDDFRRILKEPNASLTQQYQALL 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT++ I  +A++A ++N +  +IGARRL T+MER+LE++SF+ASD   +T+ 
Sbjct: 361 KTEGVDVVFTDEGISRIAELAFDVNESTENIGARRLHTMMERLLEELSFAASDCNGQTIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D  +V   + +   + D+ H+IL
Sbjct: 421 VDKAFVDQQLSELSKDEDLSHYIL 444


>gi|24375649|ref|NP_719692.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis
           MR-1]
 gi|32129630|sp|Q8E9U9|HSLU_SHEON RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24350563|gb|AAN57136.1|AE015849_3 heat shock protein HslVU, ATPase subunit HslU [Shewanella
           oneidensis MR-1]
          Length = 440

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/439 (53%), Positives = 313/439 (71%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123

Query: 127 SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             +AEERILDAL+ K         + SNTR++FRKKLR+ ++ DKEIDI+VA     I  
Sbjct: 124 EEHAEERILDALLPKPKNDWDDSDSNSNTRQIFRKKLRESQLDDKEIDIDVAQPQIGIEI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   +I
Sbjct: 184 MSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQAI 241

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           ++VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHILF
Sbjct: 242 ELVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LM TEG+
Sbjct: 302 IASGAFQMSKPSDLIPELQGRLPIRVELDALTADDFKRILTEPHASLTEQYIALMATEGV 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           I++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VIDA+Y
Sbjct: 362 IIEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDADY 421

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+ +   + D+  FIL
Sbjct: 422 VSAHLDNLVQDEDLSRFIL 440


>gi|88607388|ref|YP_505627.1| ATP-dependent protease ATP-binding subunit [Anaplasma
           phagocytophilum HZ]
 gi|88598451|gb|ABD43921.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Anaplasma
           phagocytophilum HZ]
          Length = 437

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/436 (53%), Positives = 326/436 (74%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SP++I  ELDR+I+GQ +AKRAVA ALR+RWRR ++P  LRDE++PKNIL++G TGVG
Sbjct: 3   DLSPKQITKELDRFIVGQTEAKRAVANALRSRWRRNRVPQPLRDEIIPKNILMIGHTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  VR+Q
Sbjct: 63  KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKYRKVVRKQ 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG- 183
           A  +AE+ IL+ LVG  A+  T+  FR KLR GE  + EI I V D    +  +FD+PG 
Sbjct: 123 ARKSAEDIILNCLVGADASEETKNAFRHKLRAGEYENSEISINVKDNRKSMPPSFDVPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            G  VGI+N++E+  KV+G  +  + I  +V++    L+ +E+++LID D + R+++ + 
Sbjct: 183 PGGQVGIMNINEIVQKVLGGNKLSRTISTTVKEAREILLDEETEKLIDEDKIVREALHIA 242

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIAS
Sbjct: 243 SNEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L+ L++ D   ILT+ E+NL+ QY+ L++TEG+ ++
Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSRDDLVRILTEPEANLLKQYRALLETEGVTVE 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED I A+A++A  +N  V +IGARRL T+ME+++EDIS++AS+   +T VID ++VR 
Sbjct: 362 FTEDGIFAIAEIASTVNREVENIGARRLHTIMEKLMEDISYNASENSGQTFVIDEKHVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D   + D+  FIL
Sbjct: 422 RLEDISKQLDLSKFIL 437


>gi|332187394|ref|ZP_08389132.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           S17]
 gi|332012555|gb|EGI54622.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           S17]
          Length = 428

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/432 (55%), Positives = 316/432 (73%), Gaps = 5/432 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV+ LD +IIGQ DAKRAVA+A+RNRWRRQ+L ADLRDE+ PKNIL++GPTG GK
Sbjct: 1   MTPKAIVAALDAHIIGQADAKRAVAVAMRNRWRRQRLGADLRDEVTPKNILMIGPTGCGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RR  V+++A
Sbjct: 61  TEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRVAVKDKA 120

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              A  R+LDALVGK ++  TRE FR + RDG +   EI+IE+    +    F+IPG A 
Sbjct: 121 EEAAMNRLLDALVGKDSSQATREAFRLRFRDGHLDQTEIEIELEQAPA--MPFEIPGAAP 178

Query: 187 VGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             ++NLSE+  K  G G+  K+ +++V   + +L+ +E+D+ +D D V R ++   E  G
Sbjct: 179 -QMINLSEMMGKAFGGGQPLKRRKLTVGAAWTKLVEEEADKRLDQDEVSRAALADAEANG 237

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 238 IVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHILFIASGAFH 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L  QYK L+ TEG+ + FTED
Sbjct: 297 VAKPSDLLPELQGRLPIRVELKALTEGDFVAILSDTKASLPAQYKALIGTEGVEISFTED 356

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I A+A +A  +N+ V +IGARRLQTVME++LEDISF A D Q  T+ IDA YV   +  
Sbjct: 357 GIAAIARIAAEVNAQVENIGARRLQTVMEKLLEDISFEAEDRQGTTLTIDAAYVDSQLSA 416

Query: 426 FPSETDMYHFIL 437
               TD+  F+L
Sbjct: 417 VARNTDLSRFVL 428


>gi|113971851|ref|YP_735644.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           MR-4]
 gi|117922132|ref|YP_871324.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           ANA-3]
 gi|123130042|sp|Q0HED0|HSLU_SHESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221610|sp|A0L1J9|HSLU_SHESA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113886535|gb|ABI40587.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-4]
 gi|117614464|gb|ABK49918.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp.
           ANA-3]
          Length = 442

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             +AEERILDAL+ K            +SNTR++FRKKLR+G++ DKEIDI+VA     I
Sbjct: 124 EEHAEERILDALLPKPKNDWDNTDSDTSSNTRQIFRKKLREGQLDDKEIDIDVAQPQVGI 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F E  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VIDA
Sbjct: 362 GVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|70733940|ref|YP_257580.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens Pf-5]
 gi|123748567|sp|Q4KJK3|HSLU_PSEF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68348239|gb|AAY95845.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           fluorescens Pf-5]
          Length = 446

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/450 (52%), Positives = 321/450 (71%), Gaps = 21/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI + RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMFREQEMIRVRH 120

Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+ +  T            SNTR++FRK+LR+G++ DKEI+IEVA+ 
Sbjct: 121 RAEDAAEERILDALLPQARTGFNSDDAAPAQDSNTRQLFRKRLREGQLDDKEIEIEVAEA 180

Query: 173 SS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +  DIS    P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AGVDIS---APPGMEEMTNQLQSLFAN-MGKGKRKNRKLKVKEALKLVRDEEASRLVNDE 236

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 237 ELKAKALEAVEQHGIVFIDEIDKVAKRGNAGGVDVSREGVQRDLLPLIEGCTVNTKLGMV 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+E
Sbjct: 297 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRE 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 357 LLKTEGLNIEFLPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 416

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+ + IDA YV  H+G+     D+  +IL
Sbjct: 417 SEEPIRIDAAYVNSHLGELAQNEDLSRYIL 446


>gi|167625772|ref|YP_001676066.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           halifaxensis HAW-EB4]
 gi|189043920|sp|B0TVV4|HSLU_SHEHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167355794|gb|ABZ78407.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           halifaxensis HAW-EB4]
          Length = 441

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/441 (53%), Positives = 312/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  L+ +E+ +LI+ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSAGDFKRILTEPHASLTEQYIALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTED ID++A+ A  +N    +IGARRL TVMER++E++SF ASD      VIDA
Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSFEASDKSGSVTVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV+  + +   + D+  +IL
Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441


>gi|120600432|ref|YP_965006.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           W3-18-1]
 gi|166221611|sp|A1RP57|HSLU_SHESW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120560525|gb|ABM26452.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp.
           W3-18-1]
 gi|319424864|gb|ADV52938.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           putrefaciens 200]
          Length = 442

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/441 (53%), Positives = 312/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R+ A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQLA 123

Query: 127 SINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             +AEERILDAL+ K             SNTR++FRKKLR+G++ DKEIDI+VA     I
Sbjct: 124 EEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIGI 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD      VIDA
Sbjct: 362 GVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|269958525|ref|YP_003328312.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
 gi|269848354|gb|ACZ48998.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
          Length = 483

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/435 (52%), Positives = 330/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TGVG
Sbjct: 50  DLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTGVG 109

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V +Q
Sbjct: 110 KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKIVAKQ 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG  
Sbjct: 170 ARKSSEEIILNCLVGVDASEETKSTFRERLRAGEFEDSEISISVKENKNVQHSFDVPGMP 229

Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +  
Sbjct: 230 GSQVGIMNINEIVQKMLGGNKQFKTLKTTVREAREILLDEETEKLIDEDKIVREALHIAS 289

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIASG
Sbjct: 290 NEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIASG 348

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L+ L++ D   ILT+ ESNL+ QY+ LM+TEG+ ++F
Sbjct: 349 AFHLAKPSDLLPELQGRLPIRVELQPLSRDDLIRILTEPESNLLRQYRALMETEGVNVEF 408

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE+ + A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT +ID  +V+  
Sbjct: 409 TENGVLAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENRGKTYIIDEGHVKEK 468

Query: 423 IGDFPSETDMYHFIL 437
           + D   + D+  FIL
Sbjct: 469 LEDISKQMDLSKFIL 483


>gi|310817174|ref|YP_003965138.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium
           vulgare Y25]
 gi|308755909|gb|ADO43838.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium
           vulgare Y25]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/442 (54%), Positives = 323/442 (73%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ LDR+I+GQ DAKRAVA+ALR+RWRR  L   +RDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPRQIVAALDRHIVGQHDAKRAVAVALRSRWRRNHLDDAMRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R +VR++
Sbjct: 63  KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAIIETREYMRADVRQR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A  +AEER++ A+ G+ A   TRE+FR+KLR+GE+   EI+IEV DT++    F++PG  
Sbjct: 123 AVASAEERVISAIAGEGAREQTREMFRQKLRNGELDGTEIEIEVPDTAAQ-PQFELPGQP 181

Query: 186 SVG-ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +G ++NL ++F K  G+ R KK R++V + +  L+ DE+D+L+D + V   +++ V+  
Sbjct: 182 GMGNMVNLGDIFGKAFGARRVKK-RLTVAESHDALLNDEADKLLDDEAVKVAALKAVQES 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVAARSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI---------LQYKELMKT 355
           HV++P+DLLPE+QGR P+RV L +L + DF  ILT+TE+ L           QY  LM T
Sbjct: 301 HVAKPSDLLPELQGRLPIRVELTALTEDDFIRILTETENALTRQYTALTLPRQYTALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I A+A +A  +N +V +IGARRL TV+ERV ED+SF A +   + VVID
Sbjct: 361 EDVDVSFTEDGIAAIARIAAEVNQSVENIGARRLYTVIERVFEDLSFDAPEQSGQQVVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  H+G    ++D+  ++L
Sbjct: 421 GAYVDRHLGQLARQSDLSRYVL 442


>gi|148260411|ref|YP_001234538.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum
           JF-5]
 gi|326403603|ref|YP_004283685.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum
           AIU301]
 gi|146402092|gb|ABQ30619.1| heat shock protein HslVU, ATPase subunit HslU [Acidiphilium cryptum
           JF-5]
 gi|325050465|dbj|BAJ80803.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum
           AIU301]
          Length = 439

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/435 (56%), Positives = 329/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            ++PREIVSELDR+I+GQQDAKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTG G
Sbjct: 6   TYTPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQLPEGLREEVVPKNILMIGPTGCG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV+V+I ++R+  R  V+ +
Sbjct: 66  KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVEVSITMLRDMSRKGVQAR 125

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPGG 184
           A + AE+R+L ALVG+ A+S TR  FR+ LRDGE+ +KEID++V++   + I   D+PG 
Sbjct: 126 AELAAEDRLLTALVGEGASSETRNRFRRMLRDGEMEEKEIDVDVSEAPPNVIGQMDMPGM 185

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G +NL ++   + G    +K RM+V      L R+E+DRL+D + +  D+    E +
Sbjct: 186 PPGGAINLGDMMKSMFGRQHGRK-RMTVAAARAALEREEADRLLDNEQLTADARLHAETH 244

Query: 245 GIVFLDEFDKIVAR-DSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           GIVFLDE DKI AR +SG  G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 245 GIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 304

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+ E +L+ QY  LMKTE + L F
Sbjct: 305 AFHVAKPSDLLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDLHF 364

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++DA+A +A ++N  V +IGARRL TV+ER+LE+ISF+A+D   +TV +DA  V   
Sbjct: 365 TDDAVDAVAALAADINDRVENIGARRLATVLERLLEEISFAATDRAGETVTVDAALVNDK 424

Query: 423 IGDFPSETDMYHFIL 437
           +    +  D+  FIL
Sbjct: 425 VAPLAARGDLGRFIL 439


>gi|157963594|ref|YP_001503628.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           pealeana ATCC 700345]
 gi|189043921|sp|A8H956|HSLU_SHEPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157848594|gb|ABV89093.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella pealeana
           ATCC 700345]
          Length = 441

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/441 (53%), Positives = 311/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  L+ +E+ +LI+ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALTAGDFKRILTEPHASLTEQYIALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTED ID++A+ A  +N    +IGARRL TVMER++E++S+ ASD      VIDA
Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV+  + +   + D+  +IL
Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441


>gi|226946555|ref|YP_002801628.1| ATP-dependent protease ATP-binding subunit HslU [Azotobacter
           vinelandii DJ]
 gi|259491368|sp|C1DHS0|HSLU_AZOVD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226721482|gb|ACO80653.1| heat shock protein HslU [Azotobacter vinelandii DJ]
          Length = 446

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/448 (52%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+I+GQ+DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIVGQEDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMMREQEIQRVRH 120

Query: 125 QASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+                SNTR++FRK+LR+G++ DKEIDIE+ +T 
Sbjct: 121 RAEDAAEDRILDALLPPARQGFGDEPIAREDSNTRQLFRKRLREGQLDDKEIDIEITETP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           S +     PG   +    L  LFS  MG GRKK  ++ V+     +  +E+ RL++ + +
Sbjct: 181 SGVEIMAPPGMEEM-TSQLQNLFSS-MGKGRKKTHKLKVKDALKLVRDEEAARLVNEEEL 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 239 KARALESVEQNGIVFIDEIDKVAKRANVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L   DF  ILT+  ++L  QY+EL+
Sbjct: 299 DHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALTPEDFERILTEPHASLTEQYRELL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE---- 409
           KTEG+ + F  D I  +A++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 359 KTEGLNIQFAADGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAADHSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +VIDA YV  H+G+   + D+  +IL
Sbjct: 419 QPIVIDAAYVNNHLGELAQDEDLSRYIL 446


>gi|166710520|ref|ZP_02241727.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 447

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/451 (52%), Positives = 326/451 (72%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D +I + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSIKLYREQAKARVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|190571157|ref|YP_001975515.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018561|ref|ZP_03334369.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357429|emb|CAQ54863.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995512|gb|EEB56152.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 483

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G TGVG
Sbjct: 50  DLPPQKIVKELDRFIIGQNDAKRAVAIALRNRWRRNKVPLPLREEIIPKNILMIGHTGVG 109

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++
Sbjct: 110 KTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALTKK 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+ I++++VG+ AT  +++VFR++LR+ E  D E+ I V ++   +  FDIPG  
Sbjct: 170 ALGLAEKIIVNSMVGEDATEESKKVFRERLRNKEFEDGEVSINVRESKGMLPTFDIPGMP 229

Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  +G++N++E+  K+  G+ + K I + V++    L+ +ES+RL+D D + +++I +V 
Sbjct: 230 GGQIGVMNVTEIVGKMFNGNKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 289

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++VSTKYG + TD+ILFIASG
Sbjct: 290 NEGIVFLDEIDKIAARTEIKG-EVNREGVQRDLLPLLEGTTVSTKYGPVKTDYILFIASG 348

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + L+F
Sbjct: 349 AFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVTLEF 408

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I+ +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  VID++YVR  
Sbjct: 409 TDDGIETIAEIAFTVNREVENIGARRLHTVMEKLLDEISFIASEKNSEKFVIDSKYVRDK 468

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 469 LESISKQLDLSKFIL 483


>gi|58696800|ref|ZP_00372331.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698623|ref|ZP_00373519.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630856|ref|YP_002727647.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi]
 gi|58534868|gb|EAL58971.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58537009|gb|EAL60157.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592837|gb|ACN95856.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi]
          Length = 496

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G TGVG
Sbjct: 63  DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++
Sbjct: 123 KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIPG  
Sbjct: 183 ALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242

Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  VG++N++E+  K+  GS + K I + V++    L+ +ES+RL+D D + +++I +V 
Sbjct: 243 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG
Sbjct: 303 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 361

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + L+F
Sbjct: 362 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 421

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV+  
Sbjct: 422 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 481

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 482 LESISKQLDLSKFIL 496


>gi|21241409|ref|NP_640991.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|23821710|sp|Q8PPP7|HSLU_XANAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21106744|gb|AAM35527.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 455

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/454 (51%), Positives = 325/454 (71%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +EVA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ 
Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           +L++ D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+
Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 362 ALIKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|127511308|ref|YP_001092505.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica
           PV-4]
 gi|166221608|sp|A3Q9U8|HSLU_SHELP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126636603|gb|ABO22246.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella loihica
           PV-4]
          Length = 441

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/440 (52%), Positives = 313/440 (71%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ+AKR+VAIALRNRWRR QL A LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQQNAKRSVAIALRNRWRRMQLDAALRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + + +A
Sbjct: 64  TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDAAVKLTREEQMAKCKFRA 123

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            + TR+VFRKKLR+G++ DKEI+I++A     I 
Sbjct: 124 EEAAEERILDALLPKPKEDWDTEKKDDTGTRQVFRKKLREGQLDDKEIEIDIAAPQVGIE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   MG G  K+ +M++++ Y  L+ +E+ +L++ D +   +
Sbjct: 184 IMSPPGMEEM-TSQLQSMFQN-MGPGASKRRKMTIKEAYKLLIEEEAAKLVNPDDLKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L++L+ +DF+ ILT+  ++L  QY  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELEALSANDFKRILTEPHASLTEQYVALMATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++F+E  I+ +A  A  +N    +IGARRL TVMER++ED+SF ASD    T VIDA+
Sbjct: 362 VKVEFSESGIERIAQAAWQVNERTENIGARRLHTVMERLMEDLSFEASDKSGSTTVIDAD 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ +   + D+  FIL
Sbjct: 422 YVNAHLENLVQDEDLSRFIL 441


>gi|307546359|ref|YP_003898838.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
 gi|307218383|emb|CBV43653.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
          Length = 440

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/442 (55%), Positives = 316/442 (71%), Gaps = 14/442 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV  LD+YIIGQQDAKRAVA ALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHALDQYIIGQQDAKRAVASALRNRWRRMQLDEELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPFIK+E TKFTE+GYVGR+VE IIRDL + AI +VRE  +DEVR +
Sbjct: 63  KTEIARRLAKLSGAPFIKIEATKFTEVGYVGRDVESIIRDLTEAAIKLVREQAKDEVRHR 122

Query: 126 ASINAEERILDALV-------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AE+RILDAL+       G+  T N TR+ FRKKLR+G++ DKEIDIEV   S  + 
Sbjct: 123 AEDAAEDRILDALLPPPRGQEGQPRTDNATRQAFRKKLREGQLDDKEIDIEVTPQSQGVD 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LFS  MG  + +  R++V+  +  L  +E+ +L++ D + + +
Sbjct: 183 IMTPPGMEEM-TSQLQNLFSS-MGKQKTETRRVAVKDAFALLRDEEAAKLVNEDDIKQRA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           I+ VE +GIVFLDE DK VA+ SG   G  VSREGVQRDLLPL+EGSSVSTK+G + TDH
Sbjct: 241 IEAVEQHGIVFLDELDK-VAKGSGQSSGGEVSREGVQRDLLPLIEGSSVSTKHGMVKTDH 299

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGR P+RV L +L   DF+ ILT+  + L  QY  L+ T
Sbjct: 300 ILFIASGAFHLSRPSDLIPELQGRLPIRVELNALTPDDFKRILTEPSAALTRQYTALLAT 359

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FT+D I+ +A++A  +N    +IGARRL TVMER+LED SF  SDL E T+ ID
Sbjct: 360 EDLKVEFTDDGIERIAEIAWKVNEGTENIGARRLHTVMERLLEDASFKGSDLGE-TLTID 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+   + D+  +IL
Sbjct: 419 AAYVDSQLGELAMDEDLSRYIL 440


>gi|42520987|ref|NP_966902.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410728|gb|AAS14836.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 437

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G TGVG
Sbjct: 4   DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++
Sbjct: 64  KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIPG  
Sbjct: 124 ALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 183

Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  VG++N++E+  K+  GS + K I + V++    L+ +ES+RL+D D + +++I +V 
Sbjct: 184 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 243

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG
Sbjct: 244 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + L+F
Sbjct: 303 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV+  
Sbjct: 363 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 422

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 423 LESISKQLDLSKFIL 437


>gi|146291635|ref|YP_001182059.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           putrefaciens CN-32]
 gi|166221609|sp|A4Y2S7|HSLU_SHEPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145563325|gb|ABP74260.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           putrefaciens CN-32]
          Length = 442

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/441 (52%), Positives = 311/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL  D R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R+ A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQLA 123

Query: 127 SINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             +AEERILDAL+ K             SNTR++FRKKLR+G++ DKEIDI+VA     I
Sbjct: 124 EEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIGI 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF K MG    K+ +M +++ +  L+ +E+ +L++ + +   
Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD      VIDA
Sbjct: 362 GVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442


>gi|212633356|ref|YP_002309881.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           piezotolerans WP3]
 gi|226704531|sp|B8CI18|HSLU_SHEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|212554840|gb|ACJ27294.1| Heat shock protein HslU [Shewanella piezotolerans WP3]
          Length = 441

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 314/440 (71%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +A
Sbjct: 64  TEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMAKCKFRA 123

Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K          + + TR+VFRKKLR+G++ DKEI+I++A   + I 
Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPSDNATRQVFRKKLREGQLDDKEIEIDIAAPQAGIE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   MG G  K+ +M +++ +  L+ +E+ +L++ D +   +
Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAHKLLIEEEAAKLVNADDLKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELEALSADDFKRILTEPHASLTEQYVALMGTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++F +  IDA+A+ A  +N    +IGARRL TVMER++E++S+ ASD      V+DA+
Sbjct: 362 VEVEFKDSGIDAIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVVDAD 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV+ H+ +   + D+  FIL
Sbjct: 422 YVKAHLDNLVQDEDLSRFIL 441


>gi|330938647|gb|EGH42213.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 445

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +T 
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINETV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|225677227|ref|ZP_03788220.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590751|gb|EEH11985.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 496

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G TGVG
Sbjct: 63  DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++
Sbjct: 123 KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIPG  
Sbjct: 183 ALILAEKTIVNSMVGEDATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242

Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  VG++N++E+  K+  GS + K I + V++    L+ +ES+RL+D D + +++I +V 
Sbjct: 243 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG
Sbjct: 303 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 361

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + L+F
Sbjct: 362 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 421

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV+  
Sbjct: 422 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 481

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 482 LESISKQPDLSKFIL 496


>gi|182681293|ref|YP_001829453.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           M23]
 gi|238691118|sp|B2IA20|HSLU_XYLF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|182631403|gb|ACB92179.1| heat shock protein HslVU, ATPase subunit HslU [Xylella fastidiosa
           M23]
 gi|307579744|gb|ADN63713.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 459

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/453 (52%), Positives = 328/453 (72%), Gaps = 25/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 11  TMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR Q
Sbjct: 71  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130

Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166
           A   AEERILDAL+ + +                    S TR  FR+ LR GE+ ++EI+
Sbjct: 131 AEEYAEERILDALLPRRSVGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEEREIE 190

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS + G G+ +K +++++   P L+ +E+ 
Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLAIKAARPLLIEEEAA 246

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284
           +L++ D +   +I+  E  GIVF+DE DK+V R D+  G  VSREGVQRDLLPLVEGS+V
Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ 
Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ +
Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|294666815|ref|ZP_06732048.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603399|gb|EFF46817.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 455

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/452 (51%), Positives = 324/452 (71%), Gaps = 24/452 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 8   TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 67

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR Q
Sbjct: 68  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRNQ 127

Query: 126 ASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIE 168
           A   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI++E
Sbjct: 128 AEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELE 187

Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           VA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L
Sbjct: 188 VAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS 285
           ++ D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+VS
Sbjct: 244 VNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVS 303

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ L
Sbjct: 304 TKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAAL 363

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           I QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A 
Sbjct: 364 IKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAP 423

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 424 DRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|149187079|ref|ZP_01865385.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
 gi|148829290|gb|EDL47735.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
          Length = 432

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/433 (54%), Positives = 324/433 (74%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPTG G
Sbjct: 3   NLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLDRDLRDEVTPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + +E RR+ VR+ 
Sbjct: 63  KTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKERRREAVRDT 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           AS  A ER+L+ALVG+ A+  TRE FR+++    ++D E++I+V D     SN +IPG  
Sbjct: 123 ASQAAMERLLNALVGENASEATREAFRERIVQNAMNDTEVEIDVKDHPQ--SNMEIPGMP 180

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +VG+++LS++  K MG    K+ ++ V   +  L+ +E+++ +D D V+R +++  E  
Sbjct: 181 GNVGMIDLSDMLGKAMGKSNLKRRKLKVPDAWDRLVEEEAEKRMDQDDVNRVALENAETN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASGAF
Sbjct: 241 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASGAF 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+D+LPE+QGR P+RV L++L + DF  ILT+T +NL+ QYK L+ TE + LD T+
Sbjct: 300 HVSKPSDMLPELQGRLPIRVELRALTEEDFVRILTETRANLVQQYKALIGTEEVTLDITD 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+I  +A +A  +N +V +IGARRLQTVMER+LEDISF A + + +T+ +DA YVR  + 
Sbjct: 360 DAITEVAKIAARVNESVENIGARRLQTVMERLLEDISFEAEEHKGETITVDAAYVRERLD 419

Query: 425 DFPSETDMYHFIL 437
           D   +TD+  +IL
Sbjct: 420 DLSGDTDLSKYIL 432


>gi|163750991|ref|ZP_02158223.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161329281|gb|EDQ00279.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 441

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/441 (52%), Positives = 313/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQDAKRAVAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQDAKRAVAIALRNRWRRMQLDADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE    + + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKCKVR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+     I
Sbjct: 123 AEAAAEERILDALLPKPKEDWDSETKDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQVGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICRRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  Q+  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQHIALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I+A+A  A  +N    +IGARRL TVMER++E+IS++ASD     ++ID 
Sbjct: 361 GVKIEFTKDGIEAIARAAWQVNERTENIGARRLHTVMERLMEEISYAASDSSGTELLIDE 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+ H+ +   + D+  FIL
Sbjct: 421 KYVKDHLDELVQDEDLSRFIL 441


>gi|71274746|ref|ZP_00651034.1| Heat shock protein HslU [Xylella fastidiosa Dixon]
 gi|71901198|ref|ZP_00683301.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
 gi|71164478|gb|EAO14192.1| Heat shock protein HslU [Xylella fastidiosa Dixon]
 gi|71729042|gb|EAO31170.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
          Length = 461

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/455 (51%), Positives = 326/455 (71%), Gaps = 27/455 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 11  TMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR Q
Sbjct: 71  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130

Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166
               AEERILDAL+ + +                    S TR  FR+ LR GE+ D+EI+
Sbjct: 131 VEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDREIE 190

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS + G G+ +K +++++   P L+ +E+ 
Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGS 282
           +L++ D +   +I+  E  GIVF+DE DK+V R     G  + VSREGVQRDLLPLVEGS
Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSVSREGVQRDLLPLVEGS 306

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ +
Sbjct: 307 NVSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPK 366

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+
Sbjct: 367 AALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSY 426

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 427 ESPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 461


>gi|15600247|ref|NP_253741.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PAO1]
 gi|107104154|ref|ZP_01368072.1| hypothetical protein PaerPA_01005227 [Pseudomonas aeruginosa PACS2]
 gi|116053202|ref|YP_793523.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218894153|ref|YP_002443022.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa LESB58]
 gi|254238239|ref|ZP_04931562.1| heat shock protein HslU [Pseudomonas aeruginosa C3719]
 gi|254244064|ref|ZP_04937386.1| heat shock protein HslU [Pseudomonas aeruginosa 2192]
 gi|296391901|ref|ZP_06881376.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PAb1]
 gi|313110092|ref|ZP_07795994.1| heat shock protein HslU [Pseudomonas aeruginosa 39016]
 gi|21759207|sp|Q9HUC5|HSLU_PSEAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122256783|sp|Q02EW3|HSLU_PSEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226704530|sp|B7V3E7|HSLU_PSEA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9951345|gb|AAG08439.1|AE004918_9 heat shock protein HslU [Pseudomonas aeruginosa PAO1]
 gi|115588423|gb|ABJ14438.1| heat shock protein HslU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170170|gb|EAZ55681.1| heat shock protein HslU [Pseudomonas aeruginosa C3719]
 gi|126197442|gb|EAZ61505.1| heat shock protein HslU [Pseudomonas aeruginosa 2192]
 gi|218774381|emb|CAW30198.1| heat shock protein HslU [Pseudomonas aeruginosa LESB58]
 gi|310882496|gb|EFQ41090.1| heat shock protein HslU [Pseudomonas aeruginosa 39016]
          Length = 447

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/449 (53%), Positives = 322/449 (71%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V+ 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120

Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+                 SNTR++FRK+LR+G++ DKEIDIEVAD 
Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LFS  M  G+KK  ++ V +    +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVAEALKLIRDEEAVRLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DKI  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA+DL     
Sbjct: 359 LKTEGLAIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +K ++IDA YV  H+G+   + D+  +IL
Sbjct: 419 DKPILIDAGYVNSHLGELAEDEDLSRYIL 447


>gi|188575136|ref|YP_001912065.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188519588|gb|ACD57533.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 485

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/454 (51%), Positives = 326/454 (71%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 36  TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 95

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 96  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 155

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+ ILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 156 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 215

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +EVA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ 
Sbjct: 216 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 271

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSS 283
           +L++ D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+
Sbjct: 272 KLVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSN 331

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 332 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 391

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 392 ALIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 451

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 452 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 485


>gi|330951292|gb|EGH51552.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae Cit 7]
          Length = 445

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAINPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|66043661|ref|YP_233502.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae B728a]
 gi|289672014|ref|ZP_06492904.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae FF5]
 gi|302189054|ref|ZP_07265727.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae 642]
 gi|81308607|sp|Q4ZZF8|HSLU_PSEU2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|63254368|gb|AAY35464.1| Heat shock protein HslU [Pseudomonas syringae pv. syringae B728a]
 gi|330899264|gb|EGH30683.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330971748|gb|EGH71814.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330977164|gb|EGH77122.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 445

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|319785877|ref|YP_004145352.1| heat shock protein HslVU, ATPase HslU [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464389|gb|ADV26121.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 454

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/449 (51%), Positives = 319/449 (71%), Gaps = 19/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVG
Sbjct: 8   TMTPREIVQELDRHIVGQQAAKRAVAIALRNRWRRMQLDPELRNEVMPKNILMIGPTGVG 67

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  + +VR Q
Sbjct: 68  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKMYREQAKVKVRLQ 127

Query: 126 ASINAEERILDALVGKTATS----------------NTREVFRKKLRDGEISDKEIDIEV 169
           A   AEERILDAL+ + A                  +TR  FR+ LRDGE+ D+EI++E+
Sbjct: 128 AEERAEERILDALLPRRAVPGFGNGTAEVQVSGPEDSTRAKFRRMLRDGELDDREIELEL 187

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A T + +     PG   +G   L ++F+  +G G+  K  ++++   P L+ +E+ RL++
Sbjct: 188 AATGAGVDIMTPPGMEEMG-QQLRQMFAS-LGGGKTHKRSLAIRAARPLLVEEEAARLVN 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKY 288
            D V   +I+  E +GIVF+DE DK+  R    G G VSREGVQRDLLPLVEGS+VSTKY
Sbjct: 246 EDDVRAAAIEACEQHGIVFIDEIDKVAKRGENVGGGDVSREGVQRDLLPLVEGSNVSTKY 305

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++ L  Q
Sbjct: 306 GTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALSKEDFVRILTEPKAALTRQ 365

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y EL+ TEG+ L+FT D+++ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D  
Sbjct: 366 YVELLATEGVGLEFTTDAVERLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPDRD 425

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++V ID  YV  H+G+   + D+  +IL
Sbjct: 426 GQSVTIDRAYVDQHLGELVQDPDLSRYIL 454


>gi|237756271|ref|ZP_04584829.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691572|gb|EEP60622.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 448

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/450 (51%), Positives = 328/450 (72%), Gaps = 15/450 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP DLRDE++PKNIL++G
Sbjct: 1   MEIDRELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+LVDV+  +++  + +
Sbjct: 61  PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMIKAEKME 120

Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE++LD LV K              S  RE FR+ L++G++ DK ++I+V
Sbjct: 121 EVREKAKAIAEEKVLDYLVPKKTKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180

Query: 170 AD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +  S+ +    +PG   +    L ELFS  +G  ++KK R++V++    +  +E+++LI
Sbjct: 181 EEKVSAVVGGVVVPGLEDIE-SQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLI 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287
           DMD V   +++  EN GIVF+DE DK+ AR S  +G  VSREGVQRDLLP+VEG+ VSTK
Sbjct: 239 DMDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF  ILT+ ++ LI 
Sbjct: 299 YGPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  LM TEG+ L+FTED+I  +A +A  +N    +IGARRL T++E+++ED SF+A DL
Sbjct: 359 QYIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILEKIMEDFSFNAPDL 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + +VID++ VR  +G+  +  D+  +IL
Sbjct: 419 KGQKIVIDSKLVREKLGNVITNEDLTRYIL 448


>gi|170730012|ref|YP_001775445.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           M12]
 gi|238687980|sp|B0U6U9|HSLU_XYLFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167964805|gb|ACA11815.1| heat shock protein [Xylella fastidiosa M12]
          Length = 459

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 11  TMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR Q
Sbjct: 71  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130

Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166
               AEERILDAL+ + +                    S TR  FR+ LR GE+ D+EI+
Sbjct: 131 VEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDREIE 190

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS + G G+ +K +++++   P L+ +E+ 
Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284
           +L++ D +   +I+  E  GIVF+DE DK+V R D+  G  VSREGVQRDLLPLVEGS+V
Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ 
Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ +
Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|225849338|ref|YP_002729502.1| ATP-dependent protease ATP-binding subunit HslU
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644749|gb|ACN99799.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 448

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/450 (52%), Positives = 325/450 (72%), Gaps = 15/450 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ LP DLRDE++PKNIL++G
Sbjct: 1   MEVREELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQNLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+L DVA  +V+  + +
Sbjct: 61  PTGVGKTEIARRLAALVKAPFIKVEATKFTEVGYVGRDVESIIRELTDVAFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE++LD LV K              S  RE FR+ L++G + D+ ++I+V
Sbjct: 121 EVREKARKIAEEKVLDYLVPKRPRRYGSLTEEEEESPAREKFRQMLKEGLLDDRVVEIDV 180

Query: 170 ADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            + +   I    +PG   +    L E+FS  +G  R KK +++V++    +  +E+++LI
Sbjct: 181 TEKAQAVIGGVVVPGLEDIE-SQLKEIFSS-LGPSRSKKRKLTVKEALKVIENEEAEKLI 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287
           DMD V   +I+ VEN+GIVF+DE DK+ ++ S  +G  VSREGVQRDLLP+VEG+ VSTK
Sbjct: 239 DMDEVQSLAIKRVENFGIVFIDEIDKVASKSSSRSGPDVSREGVQRDLLPIVEGTVVSTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF  ILT+ ++ LI 
Sbjct: 299 YGPVRTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELKPLTKEDFVRILTEPKNALIK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK LM TEG+ L+FT+D+I+ +A +A  +N    +IGARRL T++E+++ED SF+A DL
Sbjct: 359 QYKALMLTEGVELEFTQDAIEEIARLAQEVNEKTENIGARRLHTILEKIMEDYSFNAPDL 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + V+IDA  VR  +GD  S  D+  +IL
Sbjct: 419 KGQKVIIDANIVREKLGDIISNEDLSRYIL 448


>gi|157373670|ref|YP_001472270.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis
           HAW-EB3]
 gi|189043922|sp|A8FQL9|HSLU_SHESH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157316044|gb|ABV35142.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sediminis
           HAW-EB3]
          Length = 441

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/440 (52%), Positives = 308/440 (70%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ DAKR+VAIALRNRWRR QL  D R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDTHIIGQHDAKRSVAIALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +A
Sbjct: 64  TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREDQMKKCKFKA 123

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+VA     I 
Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPDDSATRQIFRKKLREGQLDDKEIEIDVAAPQVGIE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ D +   +
Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGDSKRRKMPIKEAYKLMIEEEAAKLVNQDDMKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  Q+  +M TE 
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELSALTADDFKRILTEPHASLTEQHVAMMGTED 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FTED I+++A  A  +N    +IGARRL TVMER++ED+S+ ASD    T VIDAE
Sbjct: 362 VKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMERLMEDLSYDASDKSGNTFVIDAE 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ D   + D+  FIL
Sbjct: 422 YVSSHLDDLVQDEDLSRFIL 441


>gi|71905846|ref|YP_283433.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|123733410|sp|Q47JL8|HSLU_DECAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71845467|gb|AAZ44963.1| Heat shock protein HslU [Dechloromonas aromatica RCB]
          Length = 446

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/446 (52%), Positives = 316/446 (70%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIVSELD++I+GQ++AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPQEIVSELDKHIVGQKNAKKAVAIALRNRWRRSQVAEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI   RE     +R +
Sbjct: 63  KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVETIIRDLVEMAIKSHRERAMKAMRAR 122

Query: 126 ASINAEERILDALV--------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEERILD L+                 A + TR+ FRKKLR+GE+ DKE+DIEVA 
Sbjct: 123 AEDAAEERILDVLLPTVRGPNFFAENSESTAAENTTRQKFRKKLREGELDDKEVDIEVAA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S     F  PG   +    +  +F  V G G+KK  ++S+++    L  +E+ +L++ D
Sbjct: 183 PSLQAEIFAPPGMEEL-TQQIQGMFQSV-GGGKKKSRKLSIKEALKLLTDEEAAKLVNDD 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V +++++ VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG++VSTKYG I
Sbjct: 241 DVKQEAVKAVEQNGIVFLDELDKIASRSEMHGADVSRQGVQRDLLPLVEGTTVSTKYGMI 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  QY+ 
Sbjct: 301 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTRQYQA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TEG+ L+F ED I  LA++A  +N    +IGARRL TVME++LE++SF A  +    
Sbjct: 361 LLETEGVQLEFVEDGIRRLAEIAFQVNEKTENIGARRLHTVMEKLLEEVSFDAGKVGLDK 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+IDA YV   +G+  ++ D+  ++L
Sbjct: 421 VLIDAAYVNTKLGELAADEDLSRYVL 446


>gi|188997486|ref|YP_001931737.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|229486306|sp|B2V6B0|HSLU_SULSY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188932553|gb|ACD67183.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 448

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/450 (51%), Positives = 328/450 (72%), Gaps = 15/450 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV EL++YI+GQ +AK+AVA+ALRNRWRRQ+LP DLRDE++PKNIL++G
Sbjct: 1   MEIDKELTPKQIVEELNKYIVGQYEAKKAVAVALRNRWRRQKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+LVDV+  +V+  + +
Sbjct: 61  PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE+ILD LV K              S  RE FR+ L++G++ DK ++I+V
Sbjct: 121 EVREKAKAIAEEKILDYLVPKKPKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180

Query: 170 AD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +  S+ +    +PG   +    L ELFS  +G  ++KK R++V++    +  +E+++LI
Sbjct: 181 EEKVSAVVGGVVVPGLEDIE-SQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLI 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287
           DMD V   +++  EN GIVF+DE DK+ AR S  +G  VSREGVQRDLLP+VEG+ VSTK
Sbjct: 239 DMDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF  ILT+ ++ LI 
Sbjct: 299 YGPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  LM TEG+ L+FTED+I  +A +A  +N    +IGARRL T++ER++ED SF+A DL
Sbjct: 359 QYIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILERIMEDYSFNAPDL 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + +VID++ VR  +G+  +  D+  +IL
Sbjct: 419 KGQKIVIDSKLVREKLGNVITNEDLTRYIL 448


>gi|58583615|ref|YP_202631.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84625420|ref|YP_452792.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|75433993|sp|Q5GVM7|HSLU_XANOR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123520884|sp|Q2NYV9|HSLU_XANOM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|58428209|gb|AAW77246.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84369360|dbj|BAE70518.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 455

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/454 (51%), Positives = 326/454 (71%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+ ILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +EVA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ 
Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSS 283
           +L++ D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+
Sbjct: 242 KLVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSN 301

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 362 ALIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|330961997|gb|EGH62257.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 445

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/449 (52%), Positives = 321/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDAL-----VG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL     VG      +++ SNTR++FRK+LR+G++ DKEI+I++ +T 
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPVQSSDSNTRQLFRKRLREGQLDDKEIEIDINETV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLQIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISQD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|329894773|ref|ZP_08270574.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC3088]
 gi|328922762|gb|EGG30095.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC3088]
          Length = 439

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/439 (52%), Positives = 317/439 (72%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDRHIVGQADAKRAVAIALRNRWRRMQLPADLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ +I + RE   ++V+ +
Sbjct: 63  KTEIARRLAKLAKAPFLKVEATKFTEVGYVGRDVESIVRDLVETSIKMYREQAVEQVQFR 122

Query: 126 ASINAEERILDALVGKTATSNT------REVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AEERILDAL+    T ++      R++ RKKLR+G++ DKEI+I++ +  + +   
Sbjct: 123 AEEAAEERILDALLPPARTEDSSSSGAARQMMRKKLREGDLDDKEIEIDLRERVAGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  +FS  MG G+ KK ++++++ +  L  +E+ +LI+ D + + ++Q
Sbjct: 183 APPGMEEM-TQQLQSMFSS-MGQGKHKKHKLTIKEAFKALSEEEAHKLINEDELKQKAVQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EGSSVSTKYG + TDHILFI
Sbjct: 241 AAEQNGIVFIDELDKVAKRGDTGGADVSREGVQRDLLPLIEGSSVSTKYGFVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+S+P+DL+PE+QGR P+RV L +L   DF  ILT+ +++L  QY  L+  +G+ 
Sbjct: 301 ASGAFHLSKPSDLIPELQGRLPIRVELAALTPDDFERILTEPKASLTEQYTALLAADGLA 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           + FT D +  +A+ A  +N  V +IGARRL TVMER+L++ SFSASD    +T++IDA+Y
Sbjct: 361 IQFTPDGVRRIAESAYQVNEQVENIGARRLHTVMERLLDEASFSASDHATGETLIIDADY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+G +  + D+  FIL
Sbjct: 421 VDQHLGAYRDDQDLSKFIL 439


>gi|71897647|ref|ZP_00679892.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
 gi|71732550|gb|EAO34603.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
          Length = 459

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKR VAIALRNRWRR Q+P +LR+E+MPKNIL++GPTGVG
Sbjct: 11  TMTPREIVQELDRHIVGQQAAKRLVAIALRNRWRRMQVPQELRNEVMPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR Q
Sbjct: 71  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130

Query: 126 ASINAEERILDALVGKTA-------------------TSNTREVFRKKLRDGEISDKEID 166
           A   AEERILDAL+ + +                    S TR  FR+ LR GE+ ++EI+
Sbjct: 131 AEEYAEERILDALLPRRSLGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEEREIE 190

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS + G G+ +K +++++   P L+ +E+ 
Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284
           +L++ D +   +I+  E  GIVF+DE DK+V R D+  G  VSREGVQRDLLPLVEGS+V
Sbjct: 247 KLVNEDEIRSAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ 
Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ +
Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|294625644|ref|ZP_06704267.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600067|gb|EFF44181.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 455

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/452 (51%), Positives = 323/452 (71%), Gaps = 24/452 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 8   TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 67

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR Q
Sbjct: 68  KTEIARRLATLVNAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRNQ 127

Query: 126 ASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIE 168
           A   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI++E
Sbjct: 128 AEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELE 187

Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           VA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L
Sbjct: 188 VAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS 285
           ++ D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+VS
Sbjct: 244 VNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVS 303

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ L
Sbjct: 304 TKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAAL 363

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           I QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A 
Sbjct: 364 IKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAP 423

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 424 DRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|325925418|ref|ZP_08186817.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
 gi|325544178|gb|EGD15562.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
          Length = 455

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/454 (51%), Positives = 323/454 (71%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +EVA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ 
Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           +L++ D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+
Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 362 ALIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|119474655|ref|ZP_01615008.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119450858|gb|EAW32091.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 438

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/438 (52%), Positives = 313/438 (71%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELDRHIIGQERAKRAVAIALRNRWRRMQLDEELRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEIEKVKFR 122

Query: 126 ASINAEERILDALVGKT------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AEERILD L+ K         S TR++FRKKLR+GE+ DKEI+IE++ T   +   
Sbjct: 123 AEDAAEERILDVLLPKARGDEDDKESTTRQLFRKKLREGELDDKEIEIEISATPVGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  +FS  MGSG+KK  +M+V     ++  +E+ +L++ D +   +++
Sbjct: 183 APPGMEDM-TNQLQSMFSN-MGSGKKKTGKMTVAAALKKIQEEEAGKLVNEDELKAQAVE 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVFLDE DK+  R  G G  VSREGVQRDLLPL+EG +VSTK+G I TDHILFI
Sbjct: 241 AAEQTGIVFLDELDKVAKRSEGAGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY+ L++TEG+ 
Sbjct: 301 ASGAFHLAKPSDLIPELQGRLPIRVELEALSPGDFQRILTEPKASLTEQYQALLQTEGMS 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           + FT+D I  +A+ A  +N    +IGARRL TVMER+L++ SF A+D     + ID  YV
Sbjct: 361 ITFTDDGIKRIAETAWEVNERTENIGARRLHTVMERLLDEASFEATDKSGTELSIDESYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +G+   + D+  FIL
Sbjct: 421 NDKLGELAKDEDLSRFIL 438


>gi|294139044|ref|YP_003555022.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea
           DSS12]
 gi|293325513|dbj|BAJ00244.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea
           DSS12]
          Length = 441

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/440 (52%), Positives = 310/440 (70%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ+AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQQNAKRAVAIALRNRWRRMQLDPDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE    + + +A
Sbjct: 64  TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKSKVKA 123

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I 
Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQTGIE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ + +   +
Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDMKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFLDEIDKICRRGESTGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QY  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQYVALMATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FT D I+A+A  A  +N    +IGARRL TVMER++E++S+ ASD      VIDA+
Sbjct: 362 VKIEFTVDGIEAIAQAAWQVNERTENIGARRLHTVMERLMEELSYGASDKSGTESVIDAK 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV+ H+ +   + D+  FIL
Sbjct: 422 YVKDHLDELVQDEDLSRFIL 441


>gi|325918371|ref|ZP_08180502.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535394|gb|EGD07259.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 447

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/451 (51%), Positives = 324/451 (71%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  ++TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVTLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|15838086|ref|NP_298774.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           9a5c]
 gi|11133082|sp|Q9PD94|HSLU_XYLFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9106512|gb|AAF84294.1|AE003978_2 heat shock protein [Xylella fastidiosa 9a5c]
          Length = 459

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG
Sbjct: 11  TMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR Q
Sbjct: 71  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130

Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166
           A   AEERILD L+ + +                    S TR  FR+ LR GE+ ++EI+
Sbjct: 131 AEEYAEERILDVLLPRRSVGIGFDVDADVIRQEPSAHESETRAKFRRMLRSGELEEREIE 190

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS + G G+ +K +++++   P L+ +E+ 
Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284
           +L++ D +   +I+  E  GIVF+DE DK+V R D+  G  VSREGVQRDLLPLVEGS+V
Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ 
Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ +
Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLEMLSYES 426

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|289667444|ref|ZP_06488519.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 447

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/451 (51%), Positives = 323/451 (71%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|289664007|ref|ZP_06485588.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 447

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/451 (51%), Positives = 323/451 (71%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEVGSNGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|114776988|ref|ZP_01452008.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552509|gb|EAU54969.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 442

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/444 (53%), Positives = 312/444 (70%), Gaps = 15/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREI+SELDRYI+GQ DAKRAVAIALRNRWRRQQ+P+ +R+E+ PKNILL+GPTGVGK
Sbjct: 1   MTPREIISELDRYIVGQHDAKRAVAIALRNRWRRQQVPSPMREEITPKNILLIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I IVRE     V+  A
Sbjct: 61  TEIARRLARLANAPFIKVEATKFTEVGYVGRDVETIVRDLVDTSIKIVREEHLTRVQIPA 120

Query: 127 SINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADTS 173
              AEER+LD L+  +   N             +RE  R KLR GE+ +++++IEV  T 
Sbjct: 121 EKMAEERLLDILIPHSVNPNGPAVASSPAGNNDSREKMRHKLRLGELDNRQVEIEVEQTP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           S       P     G ++L E+   +MG   K K RMSV      + + E+DRL+D D +
Sbjct: 181 SMPMMQVFPNQGGDGGMDLQEMLGGMMGKQSKPK-RMSVADAMKIIQQQEADRLLDEDAI 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++I   EN GIVFLDE DKI  R  G G  VSREGVQRDLLPLVEG++++T+YG I T
Sbjct: 240 RDEAINRAENDGIVFLDEMDKITHR-GGTGGDVSREGVQRDLLPLVEGTTINTRYGHIKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+++P+DL+PE+QGRFP+RV+L +L +S+FR IL + ES+L  QY  L+
Sbjct: 299 DHVLFIASGAFHLAKPSDLIPELQGRFPIRVNLNALGESEFRRILVEPESSLTRQYAALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + E + + FT++ I  LA +AV +N    +IGARRL T++ERVLEDISF ASD   +++ 
Sbjct: 359 QAENVSISFTDEGIAELARIAVLVNEKTENIGARRLHTLLERVLEDISFEASDRGGESIE 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA YV   +G+  ++ D+  +IL
Sbjct: 419 VDAAYVLAQLGEISADEDLSRYIL 442


>gi|170719649|ref|YP_001747337.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           W619]
 gi|229486078|sp|B1J2T7|HSLU_PSEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|169757652|gb|ACA70968.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           W619]
          Length = 447

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/450 (51%), Positives = 315/450 (70%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAMKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ D
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNDD 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 DLKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+E
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYRE 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFKADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417

Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNGHLGELAQNEDLSRYIL 447


>gi|149912218|ref|ZP_01900797.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36]
 gi|149804698|gb|EDM64749.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36]
          Length = 443

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 311/442 (70%), Gaps = 11/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELD +IIGQQ+AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVSELDHHIIGQQNAKRAVAIALRNRWRRMQLDQELRQEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVG+ V+QII+DL DVA+ + RE    +   +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEIGYVGKEVDQIIKDLTDVAVKLTREQEMKKYHVR 122

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  NAE+R+LDAL+           K +  NTR++FRKKLR+G++ DKEI IE+A     
Sbjct: 123 AEENAEDRVLDALLPNPRNNWGEEEKASNDNTRQIFRKKLREGKLDDKEISIEIAAPQMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    K  +M V++   +L+ DE+ +L++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQNLSGGSTTKSRKMKVKEALKQLVEDEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   N  GVSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 KAIFAVENNGIVFLDEIDKICKRSDSNDGGVSREGVQRDLLPLIEGCTVTTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS+P+DL+PE+QGR P+RV L +L  +DF  ILT+  ++L  QY  ++KT
Sbjct: 302 ILFIASGAFQVSKPSDLIPELQGRLPIRVELDALTAADFVRILTEPNASLTEQYTAMLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D ID +A+ A N+N    +IGARRL TVMER++E+ISF AS+   +++V+D
Sbjct: 362 EGVNVEFTPDGIDGIANAAWNVNEKTENIGARRLHTVMERLMEEISFDASEKNGQSLVVD 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  ++ +   + D+  +IL
Sbjct: 422 GDYVGKYLNELVEDEDLSRYIL 443


>gi|325928767|ref|ZP_08189936.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
 gi|325540848|gb|EGD12421.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
          Length = 447

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/451 (51%), Positives = 322/451 (71%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|213969433|ref|ZP_03397570.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato T1]
 gi|301382644|ref|ZP_07231062.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060628|ref|ZP_07252169.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato K40]
 gi|213925804|gb|EEB59362.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato T1]
          Length = 445

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA+YV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDADYVNSHLGDLAENEDLSRYIL 445


>gi|302132701|ref|ZP_07258691.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 443

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/447 (52%), Positives = 318/447 (71%), Gaps = 20/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRHRA 120

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS- 174
              AE+RILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +    
Sbjct: 121 EDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAVGV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + + 
Sbjct: 181 DIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELK 236

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + TD
Sbjct: 237 VKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTD 296

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+K
Sbjct: 297 HILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLK 356

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----EK 410
           TEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL       
Sbjct: 357 TEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDAA 416

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + IDA+YV  H+GD     D+  +IL
Sbjct: 417 PIEIDADYVNSHLGDLAENEDLSRYIL 443


>gi|152984444|ref|YP_001351110.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PA7]
 gi|166221594|sp|A6VDH5|HSLU_PSEA7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150959602|gb|ABR81627.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           aeruginosa PA7]
          Length = 447

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/449 (53%), Positives = 320/449 (71%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V+ 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120

Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+                 SNTR++FRK+LR+G++ DKEIDIEVAD 
Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LFS  M  G+KK  ++ V      +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVADALKMIRDEEAARLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DKI  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA+DL     
Sbjct: 359 LKTEGLGIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +K + IDA YV  H+G+   + D+  +IL
Sbjct: 419 DKPIRIDAGYVNSHLGELAEDEDLSRYIL 447


>gi|78046249|ref|YP_362424.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|123585934|sp|Q3BXT9|HSLU_XANC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|78034679|emb|CAJ22324.1| ATP-dependent HslUV protease ATP-binding subunitHslU [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 455

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/454 (51%), Positives = 323/454 (71%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++VA + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ 
Sbjct: 186 LDVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           +L++ D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+
Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 362 ALIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|104783982|ref|YP_610480.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           entomophila L48]
 gi|122401537|sp|Q1I3T9|HSLU_PSEE4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|95112969|emb|CAK17697.1| ATPase component of the HslUV protease [Pseudomonas entomophila
           L48]
          Length = 447

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/451 (51%), Positives = 319/451 (70%), Gaps = 22/451 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIVRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             +  SNTR++FRK+LR+G++ DKEI+IEVA+
Sbjct: 121 RAEDAAEDRILDALLPQARVSSFSEEAQQSSGDSNTRQLFRKRLREGQLDDKEIEIEVAE 180

Query: 172 TSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           +   DI+    P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ 
Sbjct: 181 SMGVDIA---APPGMEEMTNQLQSLFAN-MGKGKRKSRKLKVKEALKMVRDEEAGRLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G 
Sbjct: 237 EELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGM 296

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+
Sbjct: 297 VKTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILKEPHASLTEQYR 356

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-- 408
           EL+KTEG+ ++F ++ +  LA++A  +N    +IGARRL T++ER+LE++SFSA DL   
Sbjct: 357 ELLKTEGLHIEFADEGLKRLAEIAFQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAST 416

Query: 409 --EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             E  + IDA YV  H+G+     D+  +IL
Sbjct: 417 HDETPIHIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|28872254|ref|NP_794873.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|32129619|sp|Q87V00|HSLU_PSESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28855508|gb|AAO58568.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331016040|gb|EGH96096.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 445

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 318/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA+YV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDADYVNSHLGDLAENEDLSRYIL 445


>gi|58584980|ref|YP_198553.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419296|gb|AAW71311.1| ATP-dependent protease HslU, ATPase subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/435 (53%), Positives = 325/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LRDE++PKNIL++G TGVG
Sbjct: 63  DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHTGVG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ I RDLVD AI +V+E  R  + ++
Sbjct: 123 KTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSITRDLVDAAIVLVKEKARKALAKK 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE+ I++++VG+ AT  +++ +R++LR+ E  D E+ I V ++ S +  FDIPG  
Sbjct: 183 ALNLAEKIIVNSMVGENATEESKKTYRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242

Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  VG++N++EL  K+   G+K K I + V++    L+ +ES+RL+D D + +++I +V 
Sbjct: 243 GRQVGVVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++VSTKYG + TD+ILFIASG
Sbjct: 303 NEGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVSTKYGYVKTDYILFIASG 361

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + L+F
Sbjct: 362 AFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVTLEF 421

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I+ +A++A  +N  V +IGARRL T+ME++L++ISF AS+   +  VID++YV+  
Sbjct: 422 TDDGIETIAEIAFTVNREVENIGARRLHTIMEKLLDEISFIASEKNGEKFVIDSKYVKDK 481

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 482 LESISKQLDLSRFIL 496


>gi|90417285|ref|ZP_01225211.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330870|gb|EAS46133.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 442

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/442 (52%), Positives = 320/442 (72%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ DAKR+VAIALRNRWRR QL  D+R+E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELNRHIIGQDDAKRSVAIALRNRWRRAQLDDDMRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVG++VE IIRDLV+ A+  VRE    +V ++
Sbjct: 63  KTEIARRLARLANAPFVKVEATKFTEVGYVGKDVESIIRDLVETAVKQVREQEIKKVEQR 122

Query: 126 ASINAEERILDALV-------GKT-ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A  +AEERILD L+       G++  TS+TR++FRKKLR+G ++DKEI+IE++ T++ + 
Sbjct: 123 AMDSAEERILDVLLPPARSTDGQSEQTSSTRQIFRKKLREGALNDKEIEIELSQTAAGVE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +FS  MG G+    +++V +    L  +E+ +LI+ + +   +
Sbjct: 183 IMAPPGMEEM-TSQLQNMFSS-MGKGKTVTRKLTVAEALKNLKEEEAAKLINEEEIKAAA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +   E  GIVFLDE DK+  R   +G  VSREGVQRDLLPL+EGS+VSTKYG I TDHIL
Sbjct: 241 VSTAEQNGIVFLDEIDKVCRRGEASGADVSREGVQRDLLPLIEGSTVSTKYGMIKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L SL  +DF  ILT+ +++L  QY ELM TEG
Sbjct: 301 FIASGAFHLAKPSDLIPELQGRLPIRVELNSLKINDFERILTEPKASLTKQYCELMATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--QEKTVVID 415
           + ++FTED +  +A++A ++N    +IGARRL T+MER+LE+IS+ AS+L  +++T  ID
Sbjct: 361 VQINFTEDGVRRIAEIAFDVNEGTENIGARRLHTIMERLLEEISYEASELGAKKETFSID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             +V   +G+  +  D+  FIL
Sbjct: 421 KAFVDKQLGELAANEDLTRFIL 442


>gi|146280739|ref|YP_001170892.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           stutzeri A1501]
 gi|166221597|sp|A4VGE9|HSLU_PSEU5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145568944|gb|ABP78050.1| heat shock protein HslU [Pseudomonas stutzeri A1501]
 gi|327479007|gb|AEA82317.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/449 (52%), Positives = 327/449 (72%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    ++R 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVHKMRH 120

Query: 125 QASINAEERILDAL------VG------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL      VG      ++  SNTR++FRK+LR+G++ DKEIDIEVA++
Sbjct: 121 RAEDAAEERILDALLPPARPVGFSEEPVQSGDSNTRQLFRKRLREGQLDDKEIDIEVAES 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LF+  MG G+KK  ++ +++ +  +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFAN-MGKGKKKSRKLKIKEAFKLIRDEEAARLVNEED 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE  GIVF+DE DK+  R + +G  VSREGVQRDLLPL+EGS+V+TK G + 
Sbjct: 239 LKARALEAVEQNGIVFIDEIDKVAKRGNTSGADVSREGVQRDLLPLIEGSTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  + L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHAALTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F ED I  +A++A  +N    +IGARRL T++ER+LE++SFSA+DL    Q
Sbjct: 359 LKTEGLHIEFLEDGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLAGKQQ 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + + IDA YV  H+G+   + D+  +IL
Sbjct: 419 GEPIRIDAAYVNEHLGELAQDEDLSRYIL 447


>gi|26991678|ref|NP_747103.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           KT2440]
 gi|148550077|ref|YP_001270179.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           F1]
 gi|32129620|sp|Q88D27|HSLU_PSEPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221596|sp|A5WA35|HSLU_PSEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24986777|gb|AAN70567.1|AE016699_8 heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           KT2440]
 gi|148514135|gb|ABQ80995.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           F1]
 gi|313500977|gb|ADR62343.1| HslU [Pseudomonas putida BIRD-1]
          Length = 447

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFLADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417

Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|330501484|ref|YP_004378353.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           mendocina NK-01]
 gi|328915770|gb|AEB56601.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           mendocina NK-01]
          Length = 446

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/448 (52%), Positives = 318/448 (70%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            ++  SNTR++FRK+LR+G+++DKEIDIEVAD  
Sbjct: 121 RAEDAAEERILDALLPPARQGFGDEPARSEDSNTRQLFRKRLREGQLNDKEIDIEVADAP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  LFS  MG G+KK  ++ V      +  +E+ RL++ + +
Sbjct: 181 MGVEIMTPPGMEEM-TNQLQNLFSS-MGKGKKKSRKLKVADAMKLVRDEEAARLVNEEEL 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 239 KARALEAVEQHGIVFIDEIDKVAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY  L+
Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYSALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 359 KTEGLDIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQNG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + IDA YV  H+G+   + D+  +IL
Sbjct: 419 EPIRIDAAYVNGHLGELAQDEDLSRYIL 446


>gi|328954142|ref|YP_004371476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454466|gb|AEB10295.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 315/445 (70%), Gaps = 14/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELD+YIIGQ DAKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVG
Sbjct: 20  HLTPREIVAELDKYIIGQADAKRSVAIALRNRWRRQQIPEGLRDEIAPKNIIMIGPTGVG 79

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA +PF+K+E TKFTE+GYVGR+VE +IRDL+++A+N+V+   R++V+ +
Sbjct: 80  KTEIARRLAKLAQSPFLKIEATKFTEVGYVGRDVESMIRDLMELAVNMVKAEAREQVKAK 139

Query: 126 ASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           A    EER+LD L+              +T    TRE  R+ LR G + ++ ID+EV+  
Sbjct: 140 AEEVVEERLLDILLPGASKPIAEVAEPNRTGVDPTREKMRQLLRQGRLDERFIDLEVSQR 199

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  I       G     +N  E+F  +  S R K+ ++ + +    LM++E+ RLIDMD 
Sbjct: 200 NIPIVEIFSNAGIEEMDINFKEMFGNIFPS-RTKQRKVKISEARDILMQEEAQRLIDMDR 258

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V  ++ + VE  GI+FLDE DKIV RD   G  VSREGVQRDLLP+VEGS+V+TK+G + 
Sbjct: 259 VVNEARRKVEQSGIIFLDEIDKIVGRDHARGPDVSREGVQRDLLPIVEGSTVTTKHGMVR 318

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH S+PADL+PE+QGRFP+RV L+SL   +F+ ILT+ ++ LI QY+ L
Sbjct: 319 TDHILFIASGAFHTSKPADLIPEMQGRFPIRVELQSLGVEEFKRILTEPQNALIKQYRAL 378

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEGI LDF  D+I  +A +A  +N    +IGARRL TVME++LEDISF A + Q+ T+
Sbjct: 379 MATEGIELDFDPDAIKEIAVLATQVNERTENIGARRLHTVMEKLLEDISFHAPEWQQGTI 438

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I A+YVR  + D   + D+  +IL
Sbjct: 439 TITADYVRERLSDLVGDQDLSRYIL 463


>gi|167036040|ref|YP_001671271.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           GB-1]
 gi|189043915|sp|B0KM26|HSLU_PSEPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166862528|gb|ABZ00936.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           GB-1]
          Length = 447

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/450 (51%), Positives = 313/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408
           L+KTEG+ + F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIAFQADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417

Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|257482922|ref|ZP_05636963.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289624152|ref|ZP_06457106.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647387|ref|ZP_06478730.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298485095|ref|ZP_07003191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160347|gb|EFI01372.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322074|gb|EFW78170.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330825|gb|EFW86799.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330865705|gb|EGH00414.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330872045|gb|EGH06194.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330984743|gb|EGH82846.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331009574|gb|EGH89630.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 445

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/449 (51%), Positives = 317/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|325272527|ref|ZP_08138899.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp.
           TJI-51]
 gi|324102337|gb|EGB99811.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp.
           TJI-51]
          Length = 447

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFNEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEAGRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILREPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFVADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417

Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DETPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|325922228|ref|ZP_08184014.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri
           ATCC 19865]
 gi|325547298|gb|EGD18366.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri
           ATCC 19865]
          Length = 447

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/451 (51%), Positives = 322/451 (71%), Gaps = 24/451 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+++V
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARHEPSSQDNETRIKFRRMLRNGELDEREIELDV 180

Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A + S DI     PG   +G   L ++FS  +GSG+ +K +++++   P L+ +E+ +L+
Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST 286
           + D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+VST
Sbjct: 237 NEDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSTGGDVSREGVQRDLLPLVEGSNVST 296

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI
Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 357 KQYEALLQTEGVNLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPD 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V +DA YV   +G+   + D+  +IL
Sbjct: 417 RDGQSVSVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|332288323|ref|YP_004419175.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium
           anatis UMN179]
 gi|330431219|gb|AEC16278.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium
           anatis UMN179]
          Length = 444

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 312/442 (70%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVA+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAMKLVRQTEINKNRYRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+              + SNTR++FRKKLR+G++ DKEI+I+VA   + 
Sbjct: 124 EEAAEERILDVLLPPAKDQWGNVESNDSHSNTRQIFRKKLREGQLDDKEIEIDVAAGGTV 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  +F + + SG+ +K +M ++     L+ DE+ +LI+ + +  
Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLSSGQTQKRKMKIKDALKVLIEDEAAKLINPEELKL 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+++TK+G + TDH
Sbjct: 243 KAIEAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGSTINTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VSRP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM+T
Sbjct: 303 ILFIASGAFQVSRPSDLIPELQGRLPIRVELGALSAKDFERILTEPNASLTEQYKALMQT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TV+ER+++ ISF ASD+  + V ID
Sbjct: 363 EGVTIEFTQDAIATIAEAAFRVNEKTENIGARRLHTVLERLMDKISFEASDMSGEKVTID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV+  +GD     D+  FIL
Sbjct: 423 EAYVKSALGDVVENEDLSRFIL 444


>gi|15605757|ref|NP_213134.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5]
 gi|11132844|sp|O66574|HSLU_AQUAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|2982904|gb|AAC06522.1| chaperone HslU [Aquifex aeolicus VF5]
          Length = 450

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/440 (49%), Positives = 324/440 (73%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ +V EL++Y++GQ++AK+AVAIALRNRWRRQ+LP +LR+E++PKNIL++GPTGVGK
Sbjct: 13  LTPKRVVEELNKYVVGQEEAKKAVAIALRNRWRRQKLPENLRNEVIPKNILMIGPTGVGK 72

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L  APF+KVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +  EVRE+A
Sbjct: 73  TEIARRLANLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSFQMVKQEKMKEVRERA 132

Query: 127 SINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEER+LD LV    TS           RE  R+KLR GE+ D+ ++IEV + +  + 
Sbjct: 133 RRLAEERLLDYLVPHQFTSFGIRESRDAGKREELRQKLRKGELDDRIVEIEVKEKTVPMV 192

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               P G       + E+ S ++ S R++K++  V++    L ++E+++LIDM+ V R++
Sbjct: 193 GIAGPPGLEELENQIKEMLSGLIPSKRRRKVK--VKEALQILEQEEAEKLIDMEEVAREA 250

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP++EG++V+TKYG + TDHIL
Sbjct: 251 IYRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPILEGTTVNTKYGPVKTDHIL 310

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF+ IL + E+ L  QY EL+KTE 
Sbjct: 311 FIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPENALTKQYIELLKTEN 370

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+FT+D+I+ +A +A  +N+   +IGARRL TVME++LEDISF+A ++  +T++IDA+
Sbjct: 371 VYLEFTDDAIEEIARIAEEINTKTENIGARRLHTVMEKLLEDISFNAPEMAGQTIIIDAK 430

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V+  + +   + ++  +IL
Sbjct: 431 FVKAKLENLVKDEELSRYIL 450


>gi|330886166|gb|EGH20067.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 445

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/449 (51%), Positives = 316/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELTRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|330964752|gb|EGH65012.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 445

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/449 (51%), Positives = 318/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKVKALEGVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA+YV  H+G+     D+  +IL
Sbjct: 417 AAPIEIDADYVNSHLGELAENEDLSRYIL 445


>gi|170728751|ref|YP_001762777.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella woodyi
           ATCC 51908]
 gi|238688681|sp|B1KK51|HSLU_SHEWM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|169814098|gb|ACA88682.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella woodyi
           ATCC 51908]
          Length = 441

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/440 (52%), Positives = 310/440 (70%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ +AKR+VAIALRNRWRR QL AD R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQHNAKRSVAIALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +A
Sbjct: 64  TEIARRLAKLARAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMKKCKFRA 123

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            S TR+VFRKKLR+G++ DKEI+I+V+     I 
Sbjct: 124 EEAAEERILDALLPKAKEDWDNEKPDDSATRQVFRKKLREGQLDDKEIEIDVSAPQVGIE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ D +   +
Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGLGASKRRKMPIKEAYKLMVEEEAAKLVNQDDLKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFLDEIDKICKRGEASGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  Q   LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQQIALMGTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FTED I+++A  A  +N    +IGARRL TVME++ E++S+ ASD    T+VIDA+
Sbjct: 362 VKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMEKLTEELSYEASDKSGSTIVIDAK 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ +   + D+  FIL
Sbjct: 422 YVSDHLDNLVQDEDLSRFIL 441


>gi|21232922|ref|NP_638839.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767005|ref|YP_241767.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188990098|ref|YP_001902108.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. B100]
 gi|23821705|sp|Q8P552|HSLU_XANCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|81307009|sp|Q4UYX6|HSLU_XANC8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229486307|sp|B0RNK7|HSLU_XANCB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21114758|gb|AAM42763.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572337|gb|AAY47747.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167731858|emb|CAP50042.1| proteasome-like complex chaperone subunit [Xanthomonas campestris
           pv. campestris]
          Length = 455

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/454 (50%), Positives = 322/454 (70%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + +                  + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRSAGIGFDPEAARHEPSAQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +EVA + S DI     PG   +G   L ++FS  +G G+ +K +++++   P L+ +E+ 
Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGGGKSQKRKLTIKAARPLLIEEEAG 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           +L++ D +   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+
Sbjct: 242 KLVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++
Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 362 ALIKQYEALLQTEGVALTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|145297300|ref|YP_001140141.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|166221458|sp|A4SHM1|HSLU_AERS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|142850072|gb|ABO88393.1| ATP-dependent protease HslVU, ATPase subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 442

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/441 (53%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLGEEMRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VRE+  ++++ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKLVRETEMEKMKYRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+           K   SNTR++FRKKLR+G++ DKEI++E++ +   +
Sbjct: 124 EEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + + 
Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+ASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM TE
Sbjct: 302 LFVASGAFQVARPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDISF AS+   +T VID 
Sbjct: 362 GVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISFDASEKSGETFVIDT 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+G    + D+  FIL
Sbjct: 422 DYVNAHLGKLIEDEDLSRFIL 442


>gi|254482739|ref|ZP_05095977.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma
           proteobacterium HTCC2148]
 gi|214037098|gb|EEB77767.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma
           proteobacterium HTCC2148]
          Length = 440

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 12/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVSELDQHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE     VR +
Sbjct: 63  KTEIARRLAKLADAPFVKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEMVRVRFR 122

Query: 126 ASINAEERILDALV-------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A  +AEERILD L+       G T  S TR++ RKKLR+GE+ DKEI++E++  +  +  
Sbjct: 123 AEESAEERILDILLPPARDSEGSTGES-TRQLLRKKLREGELDDKEIEVEISAPAMGMEI 181

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  M  G++K  +M V+  +  L  +E+ ++++ D + + ++
Sbjct: 182 MAPPGMEEM-TNQLQGMFSN-MSKGQRKNQKMPVKAAFTALCDEEAAKMVNEDELKQKAV 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              E  GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTK+G I TDHILF
Sbjct: 240 DAAEQNGIVFIDELDKVAKRSEGAGADVSREGVQRDLLPLIEGSTVSTKHGMIKTDHILF 299

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ L+ TEG+
Sbjct: 300 IASGAFHLAKPSDLIPELQGRLPIRVELNALGPDDFERILTEPNASLTEQYQALLATEGL 359

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDA 416
            ++FTED +  +A+ A  +N    +IGARRL TVMER+LE  SFSA+D  L +  +++DA
Sbjct: 360 NVEFTEDGLRGIAETAWQVNEKTENIGARRLHTVMERLLEHASFSAADTGLSDSKLIVDA 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +    S  D+  FIL
Sbjct: 420 TYVSDQLEALSSNEDLSRFIL 440


>gi|332528828|ref|ZP_08404802.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella
           gracilis ATCC 19624]
 gi|332041687|gb|EGI78039.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella
           gracilis ATCC 19624]
          Length = 453

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/453 (51%), Positives = 316/453 (69%), Gaps = 23/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQKDAKRAVAIALRNRWRRQQVEAALRPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL+DVA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLMDVAVKQTREAAMKKVRTR 122

Query: 126 ASINAEERILDALV-----------------GKT---ATSNTREVFRKKLRDGEISDKEI 165
           A   AEERILDAL+                 G++   A + TR++FRKKLR+G++ ++E+
Sbjct: 123 AEDAAEERILDALLPPPRDVSRESLAEDLERGRSVGMADNGTRQIFRKKLREGQLDEREV 182

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +IEV +    +     P G       L  LF + MG+G++K  +M + +    L+ +E+ 
Sbjct: 183 EIEVNEPKPQLEIMG-PAGMEEMTEQLRGLFGQ-MGAGKRKLRKMRIVEAMKLLLDEEAA 240

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSV 284
           +L++ D +   ++   E  GIVF+DE DK+ +R  G G   VSR+GVQRDLLPLVEG+SV
Sbjct: 241 KLVNEDEIRVQALSNAEQNGIVFIDEIDKVTSRSEGQGTAEVSRQGVQRDLLPLVEGTSV 300

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG I TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L SL+  DF  ILT T ++
Sbjct: 301 STKYGVIKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELASLSVEDFEAILTQTHAS 360

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+ L+ TEG+ L+F  D I  LA +A  +N    +IGARRL TVMER+L+D+SF A
Sbjct: 361 LTRQYQALLATEGVTLEFAPDGITRLAHIAYEVNERTENIGARRLATVMERLLDDVSFDA 420

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + L  +TV IDA YV   +     + D+ H+IL
Sbjct: 421 AKLSGQTVRIDAAYVDQRLAALSKDEDLSHYIL 453


>gi|251793772|ref|YP_003008502.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535169|gb|ACS98415.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           aphrophilus NJ8700]
          Length = 443

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQREIVKNRTKA 123

Query: 127 SINAEERILDALV-------GKT----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+       G+T    + SNTR++FRKKLR+G++ DKE++I+VA     
Sbjct: 124 EEAAEERILDALLPAAKNQWGETESRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M +++    L+ DE+ +L+  + + +
Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFQN-LSSGQTKKRKMKIKEALKTLIDDEAAKLVTPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV ID
Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +GD     D+  FIL
Sbjct: 422 AAYVSEALGDVVENEDLSRFIL 443


>gi|30250193|ref|NP_842263.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea
           ATCC 19718]
 gi|62286874|sp|Q82SP6|HSLU_NITEU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|30180988|emb|CAD86173.1| hslU; heat shock protein chaperone [Nitrosomonas europaea ATCC
           19718]
          Length = 443

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/448 (53%), Positives = 319/448 (71%), Gaps = 25/448 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPQEIVHELDKHIIGQDTAKRAVAIALRNRWRRQQVDEPLRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI   RE    + +  A
Sbjct: 64  TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREREIRKNQPLA 123

Query: 127 SINAEERILDALV----------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            +  SN TR+ FRKKLR+GE+ DKEI+IEVA   + 
Sbjct: 124 EDRAEERILDALLPPARDLGFEASPSEESNATRQKFRKKLREGELDDKEIEIEVAMAQTS 183

Query: 176 ISNFDIPGGASVGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +  F  PG        + EL S++      MGSG++K  ++ +++    L  +E+ RL++
Sbjct: 184 MEIFAPPG--------MEELTSQIQGMFQNMGSGKRKMRKLRIREARKLLTEEEAARLVN 235

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + +   ++Q VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG+++STKYG
Sbjct: 236 DEELKLGAVQNVEQNGIVFLDEIDKITSRSEVSGSDVSRQGVQRDLLPLVEGTTISTKYG 295

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT+T++ LI QY
Sbjct: 296 MIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSAEDFKQILTNTDACLIRQY 355

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+KTEGI L+F+ED+I  LA++A ++N    +IGARRL TVME++LEDISF+A+    
Sbjct: 356 QALLKTEGIELNFSEDAIGRLAEIAFSVNERTENIGARRLHTVMEKLLEDISFNATRYGG 415

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T VIDA YV   +G      D+  ++L
Sbjct: 416 STHVIDAVYVDERLGKLSQSEDLARYVL 443


>gi|73539874|ref|YP_294394.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha
           JMP134]
 gi|123626064|sp|Q476Y3|HSLU_RALEJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|72117287|gb|AAZ59550.1| Heat shock protein HslU [Ralstonia eutropha JMP134]
          Length = 443

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/447 (52%), Positives = 317/447 (70%), Gaps = 16/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SNTR+VFRKKLR+G++ DK+I++EVA  
Sbjct: 121 RTKAEEAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEVA-- 178

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            + + + DI  P G       +  +F+  MG G+K + +M V++ +  L+ +E+ +L++ 
Sbjct: 179 -AGLPSMDIMGPPGMEEMTEQIRSMFAG-MGQGKKHRRKMKVKEAFKLLIDEEAAKLVND 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   +I  VE  GIVFLDE DKI  R    G  VSR+GVQRDLLPLVEG++VSTKYG 
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKIANRSELGGGEVSRQGVQRDLLPLVEGTTVSTKYGM 296

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY+
Sbjct: 297 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQ 356

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+KTE + L F  D I  LA++A ++N  V +IGARRL TVMER+LED+SF AS    +
Sbjct: 357 ALLKTEEVELQFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSGE 416

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +GD     D+  ++L
Sbjct: 417 TVTIDAAYVNERLGDLAVNEDLSRYVL 443


>gi|114564917|ref|YP_752431.1| ATP-dependent protease ATP-binding subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122298445|sp|Q07WM2|HSLU_SHEFN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114336210|gb|ABI73592.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           frigidimarina NCIMB 400]
          Length = 441

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/440 (52%), Positives = 307/440 (69%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ+AKR+VA+ALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQQNAKRSVAVALRNRWRRMQLEPELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRHRA 123

Query: 127 SINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            S TR+VFRKKLR+G++ DKEI+I+VA     + 
Sbjct: 124 EEMAEERILDALLPKPKDDWDTDQKDDSTTRQVFRKKLREGQLDDKEIEIDVAAPQVGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF   +G    K+ ++ ++  Y +L+ DE+ +L++ + +   +
Sbjct: 184 IMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAYKQLVEDEAAKLVNQEDLKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHIL
Sbjct: 242 IELVEQNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L +L  +DF+ ILT+  ++L  Q+  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALTAADFKRILTEPFASLTEQHVALMNTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FTE  I+ +A+ A  +N    +IGARRL TVME+++E+IS+ AS+      VIDAE
Sbjct: 362 VTIEFTESGIERIAEAAWQVNERTENIGARRLHTVMEKLMEEISYDASEKSGSKFVIDAE 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+     + D+  FIL
Sbjct: 422 YVNDHLDTLVQDEDLSRFIL 441


>gi|291280524|ref|YP_003497359.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter
           desulfuricans SSM1]
 gi|290755226|dbj|BAI81603.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter
           desulfuricans SSM1]
          Length = 441

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 328/441 (74%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV+ELD+YI+GQ+ AK+AVAIALRNRWRR QLP  L+DE+ PKNI+++GPTGVG
Sbjct: 3   NLTPKQIVAELDKYIVGQKSAKKAVAIALRNRWRRLQLPEKLQDEIAPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PFIKVE +KFTE+GYVGR+VE +IRDL ++AIN+V+  +++EVRE+
Sbjct: 63  KTEIARRLAKLTKSPFIKVEASKFTEVGYVGRDVESMIRDLTEIAINLVKSEKKNEVREK 122

Query: 126 ASINAEERILDALV----GKTATSN---TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A  NAEERILD L+    G  +T +   TRE FRK LRDG++ D+ ++I+V D    I  
Sbjct: 123 AKKNAEERILDLLLPRPSGFASTPSDDETREKFRKMLRDGKLDDRFVEIDVEDAGPQIEV 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               G   +G+ NL ++F K +  G+KKK ++ +++    L   E+++LIDMD V   +I
Sbjct: 183 LTNVGMEDLGV-NLQDMF-KNLFPGKKKKKKIKIKEALEVLEMQEANKLIDMDEVKALAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           + VE  GIVF+DE DK+ +RDSG+  G  VSREGVQRDLLP++EGS+V TKYG + TDHI
Sbjct: 241 KRVEQSGIVFIDEIDKVCSRDSGSYKGADVSREGVQRDLLPIIEGSTVMTKYGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL K DF  ILT+ E+ L  QYK L+  +
Sbjct: 301 LFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFVRILTEPENALTKQYKALLAAD 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ +++T+D I+ +A++A  +N T  +IGARRL T+ME++LE+ISF A D++ K +VIDA
Sbjct: 361 GVEIEYTQDGIEKIAEIATYVNKTNENIGARRLHTIMEKLLEEISFEAPDIENKQIVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV   +     + ++  ++L
Sbjct: 421 KYVEEKLTGIIRDENLTKYVL 441


>gi|326385660|ref|ZP_08207290.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209818|gb|EGD60605.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 433

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/433 (53%), Positives = 310/433 (71%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV  LD +I+GQQDAKRAVA+ALRNRWRRQ L   LRDE+ PKNIL++GPTG G
Sbjct: 4   NLTPKAIVRALDEHIVGQQDAKRAVAVALRNRWRRQHLAPALRDEVSPKNILMIGPTGCG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + +  RR+ VRE 
Sbjct: 64  KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKARRREAVREA 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           AS  A +R+L ALVG  A+  TRE FR ++ +G ++D E++IEV D+ S     +IPG G
Sbjct: 124 ASKAAMDRLLKALVGDGASEATRESFRNRILEGAMADVEVEIEVEDSPS--MPMEIPGMG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG++NLS++  K  G    K+ ++ V   + +L+ +E+++ +D D V R ++   E  
Sbjct: 182 GGVGMINLSDMMGKAFGRQPTKRRKLRVPDAWEKLVDEEAEKRMDQDDVARVALANAETN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF
Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHVLFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+D+LPE+QGR P+RV LK L++ DF  IL++T +NL+ QY+ L++TE + L+FT 
Sbjct: 301 HVAKPSDMLPELQGRLPIRVELKGLSEDDFVRILSETRANLVEQYRALLETEKVALEFTP 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+I A+A  A  +N  V +IGARRLQTVME++LE++SF A D    TV +D  YV   + 
Sbjct: 361 DAIRAIARTAAQVNEAVENIGARRLQTVMEKLLEEVSFDAEDRVGTTVTVDEAYVAQRLA 420

Query: 425 DFPSETDMYHFIL 437
                 D+  +IL
Sbjct: 421 SLAGNADLSKYIL 433


>gi|110835106|ref|YP_693965.1| ATP-dependent protease ATP-binding subunit HslU [Alcanivorax
           borkumensis SK2]
 gi|123149266|sp|Q0VMA5|HSLU_ALCBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110648217|emb|CAL17693.1| heat shock protein HslU [Alcanivorax borkumensis SK2]
          Length = 445

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/444 (52%), Positives = 318/444 (71%), Gaps = 13/444 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IVSEL+R+I+GQ  AKRAVA+ALR RWRR QLP ++R E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKDIVSELNRHIVGQDAAKRAVALALRTRWRRMQLPEEMRAEVAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL++VAI ++R+     V  Q
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEVAIKLLRDKEIARVGSQ 122

Query: 126 ASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILDAL+    T        ++TR++FRKKLR+GE+ DKEID++VA   + I 
Sbjct: 123 ADDAAEERILDALLPPARTDDSSANTDNSTRQIFRKKLREGELDDKEIDVDVASNPAGID 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L ++FSK+  + ++K  ++ V++ Y  +  +E+ R ++ D +   +
Sbjct: 183 IMAPPGMEEM-TSQLQQMFSKMGNNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKVQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  VEN GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTKYG + TDHIL
Sbjct: 242 IDAVENSGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+SRP+DL+PE+QGR P+RV L  L+  DF+ ILT+ + +L  QYK L++TEG
Sbjct: 302 FIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLETEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVV 413
           + L+ T+D I  +A+VA  +N    +IGARRL TV+E++LE+ISF A  L     +K +V
Sbjct: 362 LNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKPLV 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DAE V  ++G+   + D+  +IL
Sbjct: 422 LDAEAVDRYLGELADDEDLSRYIL 445


>gi|221124246|ref|XP_002158924.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
 gi|260220005|emb|CBA27110.1| ATP-dependent hsl protease ATP-binding subunit hslU [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 444

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/448 (51%), Positives = 319/448 (71%), Gaps = 22/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+ IV+ELD++I+GQ  AKRAVAIALRNRWRRQ +   LR E+ PKNIL++GPTGVG
Sbjct: 3   TLTPQGIVAELDKHIVGQAQAKRAVAIALRNRWRRQMVEGTLRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES + +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEIAVKQTRESEKAKVRAR 122

Query: 126 ASINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AE+RILD L+             +T  + TR+ FRKKLR+G+++D+EI++EVA   
Sbjct: 123 AEDAAEDRILDILIPTPRADFGSLSAAETPENATRQAFRKKLREGQLADREIELEVA--- 179

Query: 174 SDISNFDIPGGASVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +   + D+ G A  G+  ++E    LF + MG G+K+  ++ ++     L  +E+ +L++
Sbjct: 180 APAPSLDVMGPA--GMEEMTEQIRGLFGQ-MGQGKKQTRKLRIEDAAKLLADEEAAKLVN 236

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   +IQM+E  GIVF+DE DK+ +R  G+G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 237 EENVKTQAIQMLEQNGIVFIDEIDKVTSRSEGSGAEVSRQGVQRDLLPLVEGTTVSTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILF+ASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++LI QY
Sbjct: 297 MVKTDHILFVASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFEAILTQTHASLIKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L FT+D I  LA +A ++N    +IGARRL TVMER+L+++SF A+ L  
Sbjct: 357 QALLATESVQLHFTDDGITRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDATSLAG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   +     + D+  FIL
Sbjct: 417 QTVHIDAAYVDQRLAALSQDEDLSRFIL 444


>gi|114330626|ref|YP_746848.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha
           C91]
 gi|122312892|sp|Q0AD37|HSLU_NITEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114307640|gb|ABI58883.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosomonas
           eutropha C91]
          Length = 443

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/449 (52%), Positives = 318/449 (70%), Gaps = 25/449 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIV ELD++IIGQ+ AKR+VAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   HMTPQEIVHELDKHIIGQEAAKRSVAIALRNRWRRQQVGEPLRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI   RE    + +  
Sbjct: 63  KTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREHEIRKNKPL 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+     S            TR+ FRKKLR+GE+ DKEIDIE+  + +
Sbjct: 123 AEDRAEERILDALLPSARDSGFDANPSEENNATRQKFRKKLREGELDDKEIDIEITMSQA 182

Query: 175 DISNFDIPGGASVGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +  F  PG        + EL S++      MG+ +KK  ++ +++    L  +E+ RLI
Sbjct: 183 SMEIFAPPG--------MEELTSQIQGMFQNMGASKKKSRKLRIREARKLLTEEEAARLI 234

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + + +  +++Q VE  GIVFLDE DKI +R   +   +SR+GVQRDLLPLVEG+++STKY
Sbjct: 235 NDEELKLNAVQNVEQNGIVFLDEIDKITSRSEVSSSDISRQGVQRDLLPLVEGTTISTKY 294

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF+ ILT+T++ LI Q
Sbjct: 295 GMIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSADDFKQILTNTDACLIRQ 354

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+KTEGI L+F+ED+I+ LA++A ++N    +IGARRL TVME++LEDISF+A+   
Sbjct: 355 YQALLKTEGIELNFSEDAIERLAEIAFSVNEITENIGARRLHTVMEKLLEDISFNATRYS 414

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             T VIDA YV   +G      D+  ++L
Sbjct: 415 GSTHVIDAAYVDERLGKLSQSEDLARYVL 443


>gi|91794710|ref|YP_564361.1| ATP-dependent protease ATP-binding subunit [Shewanella
           denitrificans OS217]
 gi|122968444|sp|Q12IT8|HSLU_SHEDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91716712|gb|ABE56638.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           denitrificans OS217]
          Length = 441

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 301/440 (68%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ  AKRAVA+ALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRFRA 123

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+ K            S TR++FRKKLR+G++ DKEIDI++A     + 
Sbjct: 124 EELAEERILDALLPKAKEDWDSEKKDDSGTRQIFRKKLREGQLDDKEIDIDIAAPQIGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF   +G    K+ ++ ++  + +L+ DE+ +L++ + +   +
Sbjct: 184 IMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAFKQLIEDEAAKLVNQEDLKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I +VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHIL
Sbjct: 242 IDLVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L  L  +DF+ ILT+  ++L  QY  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + + F E  ID LA+ A  +N    +IGARRL TVME+++EDISF ASD      VIDA+
Sbjct: 362 VTISFLESGIDKLAEAAWQVNERTENIGARRLHTVMEKLMEDISFDASDKSGSAFVIDAD 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+     + D+  FIL
Sbjct: 422 YVTEHLDTLVQDEDLSRFIL 441


>gi|119773580|ref|YP_926320.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           amazonensis SB2B]
 gi|166221605|sp|A1S2P4|HSLU_SHEAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119766080|gb|ABL98650.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           amazonensis SB2B]
          Length = 441

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/440 (52%), Positives = 306/440 (69%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL A LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDAALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDTAIKLTREVEMKKCRTRA 123

Query: 127 SINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEER+LDAL+ +            S++R++FRKKLR+G++ DKEI+I++A     + 
Sbjct: 124 EEAAEERVLDALLPRPKNDWDNNSDDNSSSRQIFRKKLREGQLDDKEIEIDIAGPQIGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF   MG    K+ +M +++   +L+ +E+ +L++ + +   +
Sbjct: 184 IMSPPGMEEM-TNQLQSLFQN-MGQAPAKRKKMKIKEALKQLVDEEAAKLVNQEDLKEKA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 242 IELVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L +L  SDF+ ILT+  ++L  QY  LM TEG
Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALTASDFKRILTEPHASLTEQYVALMATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FTE  ID +A  A  +N    +IGARRL TVMER++EDISF ASD       IDA+
Sbjct: 362 VTIEFTETGIDRIAQAAWQVNERTENIGARRLHTVMERLMEDISFEASDKSGSKFTIDAD 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ +   + D+  FIL
Sbjct: 422 YVNAHLDNLVQDEDLSRFIL 441


>gi|330877949|gb|EGH12098.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 445

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/449 (51%), Positives = 317/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTE + ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEDLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA+YV  H+G+     D+  +IL
Sbjct: 417 AAPIEIDADYVNSHLGELAENEDLSRYIL 445


>gi|71735439|ref|YP_272684.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|123734048|sp|Q48PI5|HSLU_PSE14 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71555992|gb|AAZ35203.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 445

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/449 (51%), Positives = 316/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLHEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDAEYV  H+GD     D+  +IL
Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|103487080|ref|YP_616641.1| ATP-dependent protease ATP-binding subunit HslU [Sphingopyxis
           alaskensis RB2256]
 gi|98977157|gb|ABF53308.1| heat shock protein HslVU, ATPase subunit HslU [Sphingopyxis
           alaskensis RB2256]
          Length = 433

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/433 (54%), Positives = 314/433 (72%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+ IV+ LD +IIGQ  AKRAVA+ALRNRWRRQQLPA+LRDE+ PKNIL++GPTG G
Sbjct: 4   DLTPKAIVAALDTHIIGQDAAKRAVAVALRNRWRRQQLPAELRDEVTPKNILMIGPTGCG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + ++ RRD VR  
Sbjct: 64  KTEISRRLAKLADAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKDRRRDAVRAA 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           A   A ER+LDAL GK A+  TR+ FR+++R+G + D E++IEVAD      +F++PG  
Sbjct: 124 AEEAAMERLLDALTGKGASEATRQSFRQRIREGHLDDSEVEIEVADAPG--MSFELPGQP 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             + ++NLS++  K MG   +K+ +M V      L+ +E D+ +D D V R ++   E  
Sbjct: 182 GQMSMINLSDMLGKAMGGLPRKRRKMKVIDAATRLIEEEQDKRLDQDDVARVALADAEAN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV L +L + DF  IL++T++ L  QY  L+ TEG+ L+F  
Sbjct: 301 HVAKPSDLLPELQGRLPIRVELGALTEEDFVRILSETKAGLPEQYVALLGTEGVTLNFAP 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+I  +A +A  +N  V +IGARRLQT+MER++E+ISF+A D    T+ IDA YV   + 
Sbjct: 361 DAIARVAKLAAEVNEKVENIGARRLQTIMERLVEEISFTAEDAPGATIDIDAAYVDRQLA 420

Query: 425 DFPSETDMYHFIL 437
           D   +TD+  ++L
Sbjct: 421 DVVGDTDLSKYVL 433


>gi|194367243|ref|YP_002029853.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas
           maltophilia R551-3]
 gi|194350047|gb|ACF53170.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas
           maltophilia R551-3]
          Length = 457

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/451 (51%), Positives = 321/451 (71%), Gaps = 22/451 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVG
Sbjct: 10  TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR Q
Sbjct: 70  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129

Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168
           A   AE+RILDAL+ +                +A  N TR  FRK LR+GE+ D+EI+++
Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDDREIELD 189

Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +A + S DI     PG   +G   L  +F+ + G  +  K  ++++   P L+ +E+ +L
Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLAIKAARPLLIEEEAGKL 246

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++ D +   +I+  E +GIVF+DE DK+  R D+  G  VSREGVQRDLLPLVEGS+VST
Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVST 306

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ L 
Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALT 366

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ + FT D+ID LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 367 KQYEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +T+VID+ YV  H+G+   + D+  +IL
Sbjct: 427 RDGETLVIDSAYVDTHLGELVQDPDLSRYIL 457


>gi|330807097|ref|YP_004351559.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375205|gb|AEA66555.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 445

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/449 (53%), Positives = 318/449 (70%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEITKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             T  SNTR++FRK+LR+G++ DKEI+IEVA+ +
Sbjct: 121 RAEDAAEERILDALLPPARMGFSADAAATQDSNTRQLFRKRLREGQLDDKEIEIEVAEMA 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKKKNRKLKVKEALKLVRDEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY  L
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILSEPHASLTEQYCAL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++FT + I  LA +A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 357 LKTEGLNIEFTPEGIKRLAQIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHN 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E  ++IDAEYV  H+G+     D+  +IL
Sbjct: 417 EAPILIDAEYVNSHLGELAQNEDLSRYIL 445


>gi|90580884|ref|ZP_01236686.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
 gi|90437955|gb|EAS63144.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
          Length = 443

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              A S+TR+ FRKKLR+G++ DKEI++++A     
Sbjct: 124 EELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ +M ++        +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM T
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FT D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +  +ID
Sbjct: 362 ESVEIEFTADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFMID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+F  + D+  FIL
Sbjct: 422 AAYVSERLGEFVQDEDLSRFIL 443


>gi|241765140|ref|ZP_04763128.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax
           delafieldii 2AN]
 gi|241365219|gb|EER60066.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax
           delafieldii 2AN]
          Length = 441

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/441 (51%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDHHIVGQSGAKRAVAIALRNRWRRQQVEGSLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES   ++R +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEMAVKQTRESEMKKMRSR 122

Query: 126 ASINAEERILDAL---------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILD L         V   + S  R+VFRKKLR+G + DKEI+I+VA++   +
Sbjct: 123 AEDAAEERILDVLIPPARAAAGVEHASDSTARQVFRKKLREGSLDDKEIEIDVAESRPQV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS+ MG  +++  ++ + +    L  +E+ +L++ + +   
Sbjct: 183 ELMG-PAGMEEMTEQLRGMFSQ-MGQDKRRTRKLKIAEALKLLTDEEAGKLVNEEEIKTR 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ  E  GIVF+DE DK+ AR   +G  VSR+GVQRDLLPLVEG++VSTKYG + TDHI
Sbjct: 241 AIQNAEQSGIVFIDEIDKVAARQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T ++L+ QY+ L+ TE
Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILMQTHASLVKQYQALLATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ LDFT D I  LA +A  +N    +IGARRL TVMER+L+D+SF A+ L  +TV +DA
Sbjct: 361 GVTLDFTPDGITRLARIAFEVNERTENIGARRLATVMERLLDDVSFDAARLSGQTVTVDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  +IL
Sbjct: 421 AYVDARLQTLSQDEDLSRYIL 441


>gi|229586582|ref|YP_002845083.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia africae
           ESF-5]
 gi|259491378|sp|C3PN30|HSLU_RICAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|228021632|gb|ACP53340.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia africae
           ESF-5]
          Length = 450

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAAISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|89075184|ref|ZP_01161615.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
 gi|89049006|gb|EAR54573.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
          Length = 443

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              A S+TR+ FRKKLR+G++ DKEI++++A     
Sbjct: 124 EELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ +M ++        +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM T
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FT D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +  +ID
Sbjct: 362 ESVDIEFTTDGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKAGEKFMID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+F  + D+  FIL
Sbjct: 422 AAYVSERLGEFVQDEDLSRFIL 443


>gi|261866862|ref|YP_003254784.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391045|ref|ZP_06635379.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261412194|gb|ACX81565.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290951579|gb|EFE01698.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQSEAKRAVAIALRNRWRRMQLQEPMRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRVKA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            +   +NTR++FRKKLR+GE+ DKE++I+VA     
Sbjct: 124 EEAAEERILDALLPAAKNQWGEMENRDVQNNTRQIFRKKLREGELDDKEVEIDVAGVPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +L++ + + +
Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFQN-LSSGQTKKRKMKIKDALKTLVDDEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  IL +  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAGDFERILAEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV ID
Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVSID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +GD     D+  FIL
Sbjct: 422 AAYVSEALGDVIENEDLSRFIL 443


>gi|330447101|ref|ZP_08310751.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491292|dbj|GAA05248.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 443

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+              + S+TR+ FRKKLR+G++ DKEI++++A     
Sbjct: 124 EELAEERILDVLLPPARDAWGQNEASESESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ +M ++        +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QYK LM T
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F+ D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +   ID
Sbjct: 362 ESVEIEFSADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+F  + D+  FIL
Sbjct: 422 AAYVKERLGEFVQDEDLSRFIL 443


>gi|117619601|ref|YP_858539.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|166221457|sp|A0KQI8|HSLU_AERHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|117561008|gb|ABK37956.1| heat shock protein HslVU, ATPase subunit HslU [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 442

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 313/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLDEEMRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+  ++++ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+           K   SNTR++FRKKLR+G++ DKEI++E+A +   +
Sbjct: 124 EEAAEERILDALLPNPRNSWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELAASPMGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + + 
Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+ASGAF +++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM TE
Sbjct: 302 LFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYQALMATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDIS+ AS+   +T VID 
Sbjct: 362 GVKIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVIDT 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+G    + D+  FIL
Sbjct: 422 DYVNAHLGKLIEDEDLSRFIL 442


>gi|95928614|ref|ZP_01311361.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135404|gb|EAT17056.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas
           acetoxidans DSM 684]
          Length = 442

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 320/441 (72%), Gaps = 10/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+PA+LRDE+ PKNI+++G TGVG
Sbjct: 3   NFTPREIVSELDRYIIGQRGAKRAVAVALRNRWRRQQVPAELRDEISPKNIIMIGATGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE ++RDLV++AI +VRE    +VR +
Sbjct: 63  KTEIARRLAKLAQAPFIKVEASKFTEVGYVGRDVESMVRDLVELAIIMVREQEAKKVRLK 122

Query: 126 ASINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEE++LD L+            ++S+TR+  R+ LR GE+ ++ +++E  +++   
Sbjct: 123 AEERAEEKLLDLLLPGERKNLDSEDDSSSSTRDKLRRLLRMGELDNRFVELETEESTIPA 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P GA    LN+ E+F   M   + K+ R++V +    L+  E+++L+DMD V + 
Sbjct: 183 MEVLTPPGAEDMGLNIKEMFGN-MFPKKTKRRRIAVSEARQILIDQEAEKLVDMDNVQQQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +  + E  GI+F+DE DK+ ++D G G  VSREGVQRD+LP+VEGS+V+TKYG++ TDHI
Sbjct: 242 ARDLTEQSGIIFIDEIDKVASKDGGQGPEVSREGVQRDILPIVEGSTVNTKYGAVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+A+GAFHV++P+DL+PE+QGRFP+RV L +L + +F  ILT+ +++L+ QY+ LM TE
Sbjct: 302 LFVAAGAFHVAKPSDLIPELQGRFPIRVELDNLGEEEFVRILTEPKNSLVNQYQALMSTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I L FT ++I  +A  A  +N    +IGARRL T+ME++LE++SF A ++ EKT+ ID 
Sbjct: 362 NITLSFTSEAIHEIARTAAQVNEQTENIGARRLHTIMEKLLEELSFDAPEMNEKTLTIDV 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
             VR  +GD   + D+  FIL
Sbjct: 422 AQVRESLGDIVGDEDLSRFIL 442


>gi|330827798|ref|YP_004390750.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565]
 gi|328802934|gb|AEB48133.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565]
          Length = 442

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 313/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLNEEMRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+  ++++ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+           K   SNTR++FRKKLR+G++ DKEI++E++ +   +
Sbjct: 124 EEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + + 
Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+ASGAF +++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM TE
Sbjct: 302 LFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDIS+ AS+   +T VID 
Sbjct: 362 GVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVIDT 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+G    + D+  FIL
Sbjct: 422 DYVNAHLGALVEDEDLSRFIL 442


>gi|121595971|ref|YP_987867.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax sp.
           JS42]
 gi|166221455|sp|A1WC16|HSLU_ACISJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120608051|gb|ABM43791.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax sp. JS42]
          Length = 446

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 317/448 (70%), Gaps = 20/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122

Query: 126 ASINAEERILDALV-------------GKTATSNT-REVFRKKLRDGEISDKEIDIEVAD 171
           A   AE+RILD L+             G+ A  +T R+VFRKKLR+G++ DKEI+I++AD
Sbjct: 123 AEDAAEDRILDVLIPPARGAGVDTARTGEPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182

Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                  F+I  P G       L  +FS+ MG  R++  ++ + +    L+ +E+ +L++
Sbjct: 183 ARP---QFEIMSPAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVN 238

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++   E  GIVF+DE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 239 EEEVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYG 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY
Sbjct: 299 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQY 358

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L++TEG+ LDFT + I  LA +A  +N    +IGARRL TVMER+L+++S+ A+ L  
Sbjct: 359 QALLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TVV+DA YV   +     + D+  +IL
Sbjct: 419 QTVVVDAGYVNARLQSLSQDEDLSRYIL 446


>gi|311693356|gb|ADP96229.1| heat shock protein HslVU, ATPase subunit HslU [marine bacterium
           HP15]
          Length = 442

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/441 (51%), Positives = 315/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE+      E+A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREAEMKRHEERA 123

Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+           +++ S+TR++FRKKLR+GE+ DKEI+I++ ++S+ +
Sbjct: 124 LDAAEERILDALIPPPRDFGEDRQRSSDSSTRQLFRKKLREGELDDKEIEIDLRNSSAGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  + S ++K  +M V         +E+ +L++ + + + 
Sbjct: 184 EIMAPPGMEEM-TNQLQSMFSN-LSSDKRKTRKMKVSDALKRAKEEEAAKLVNEEEIKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI
Sbjct: 242 AIQAVEQNGIVFVDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L+ QY+ LM TE
Sbjct: 302 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPEDFKRILTEPDASLVQQYEALMLTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F ED+I  +A+VA  +N +  +IGARRL TV+ER+LE +SF A D       + A
Sbjct: 362 GVKLTFREDAIARIAEVAWKVNESTENIGARRLHTVLERLLETLSFDAGDKVTDGFEVTA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV   +G+   + D+  +IL
Sbjct: 422 EYVDEKLGELSEDEDLSRYIL 442


>gi|56461557|ref|YP_156838.1| ATP-dependent protease ATP-binding subunit HslU [Idiomarina
           loihiensis L2TR]
 gi|62286741|sp|Q5QV36|HSLU_IDILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56180567|gb|AAV83289.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Idiomarina
           loihiensis L2TR]
          Length = 450

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/449 (51%), Positives = 311/449 (69%), Gaps = 20/449 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKRAVA+ALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+   RE    +VR +A
Sbjct: 64  TEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQTREEMMQKVRYRA 123

Query: 127 SINAEERILDALVGKTATSN------------------TREVFRKKLRDGEISDKEIDIE 168
              AEERILD L+    TS+                  TR+VFRKKLR+G++ DKEI+I+
Sbjct: 124 EEAAEERILDVLLPPAKTSSSGWAQQQEETPENDDQRGTRQVFRKKLREGQLDDKEIEID 183

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +A     +     PG   +    L  +F   MGS + K  +M ++  Y +L+ +E+ +L+
Sbjct: 184 LAMPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGSDKTKARKMRIKDAYKQLVDEEAAKLL 241

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + D V   +I+ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG++V+TK+
Sbjct: 242 NPDDVKEAAIESVEQNGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGTTVNTKH 301

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  Q
Sbjct: 302 GMIKTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELEALTSGDFVRILTEPSASLTTQ 361

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  L+ TEG+ + FTE+ I  +A+VA ++N T  +IGARRL TV+ER++E+ISF A+D  
Sbjct: 362 YHALLNTEGVEVSFTEEGIQRIAEVAFHVNETTENIGARRLHTVLERLMEEISFHATDHS 421

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + +VIDA+YV  H+G+   + D+  FIL
Sbjct: 422 GEKLVIDADYVNEHVGELSQDEDLSRFIL 450


>gi|15603613|ref|NP_246687.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431569|sp|P57968|HSLU_PASMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|12722164|gb|AAK03832.1| HslU [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 443

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/442 (53%), Positives = 313/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+       G+  T++    TR+VFRKKLR+G++ DKEIDI+VA  S  
Sbjct: 124 EEAAEDRILDALLPPAKNQWGQVETTDSNNTTRQVFRKKLREGQLDDKEIDIDVAAPSMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEDLKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEG++VSTK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT +SI  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+Q + V ID
Sbjct: 362 EGVNIEFTGESIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQGQVVRID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +GD     D+  FIL
Sbjct: 422 EAYVMDALGDVVENEDLSRFIL 443


>gi|15892357|ref|NP_360071.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str.
           Malish 7]
 gi|21759186|sp|Q92II6|HSLU_RICCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15619504|gb|AAL02972.1| heat shock protein hslU [Rickettsia conorii str. Malish 7]
          Length = 450

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|149377310|ref|ZP_01895056.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           algicola DG893]
 gi|149358407|gb|EDM46883.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           algicola DG893]
          Length = 439

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/441 (51%), Positives = 313/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKR+VAIALRNRWRR QL + LR+E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELNKHIVGQEEAKRSVAIALRNRWRRMQLDSGLREEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+AI ++RE        +A
Sbjct: 61  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAIKMLREKEMKRHEHRA 120

Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+           KT  S+TR++FRKKLR+GE+ DKEI+I++ ++ + +
Sbjct: 121 MDAAEERILDALIPPPRDFKEDSQKTEDSSTRQLFRKKLREGELDDKEIEIDLRNSGAGV 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  M S ++K  +M V      +  +E+ +L++ + + + 
Sbjct: 181 EIMAPPGMEEM-TSQLQNMFSS-MSSDKRKTRKMKVADAMKHVRDEEAAKLVNEEEIKQK 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI
Sbjct: 239 AIQTVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +S+L+ QY+ LM TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDSSLVQQYEALMGTE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FTED+I  +A+VA  +N T  +IGARRL TV+ER+LE +S+ A D    +  + A
Sbjct: 359 GVKLTFTEDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYEAGDQVTDSFEVTA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            +V   +G+   + D+  +IL
Sbjct: 419 AFVDEKLGELAEDEDLSRYIL 439


>gi|34580638|ref|ZP_00142118.1| heat shock protein hslU [Rickettsia sibirica 246]
 gi|28262023|gb|EAA25527.1| heat shock protein hslU [Rickettsia sibirica 246]
          Length = 450

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|304414794|ref|ZP_07395753.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283146|gb|EFL91559.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 443

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDGHIIGQDKAKRAVAIALRNRWRRMQLPPELRCEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    +++R QA
Sbjct: 64  TEIARRLAKLASAPFIKVEATKFTEVGYVGKEVDSIIRDLTDTAMKMIRHQSIEKIRAQA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
             +AE+RILD LVG           K ++  TR+ FRKKLR+G++ DKEI+I +A TS  
Sbjct: 124 EKSAEKRILDVLVGPAKESDKSEEKKKSSPTTRQTFRKKLREGKLDDKEIEINLAATSLG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +    +PG   +    L  +F  +  S + K  ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMSLPGMEEM-TNQLQSMFQHI-ASQKNKTRKLKIKEAFRLLVEEEASKLVNPEELQQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  +SR+GVQRDLLPLVEG +VSTK+G I TD+
Sbjct: 242 QTIEAVEQHGIVFIDEIDKICKRGQTSGPDISRQGVQRDLLPLVEGCTVSTKHGMIKTDY 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGRFP+RV L++L   DF  ILT+  ++L  Q+K LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRFPIRVELEALTTEDFERILTEPNASLTEQHKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + +DFT + I  +A+ A  +N    +IGARRL TV+ER++ DIS+SA + + +++ ID
Sbjct: 362 EDVTIDFTAEGIKRIAEAAWQVNERTENIGARRLHTVLERLIGDISYSACEQKGRSISID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            EYV   +GD   + D+  FIL
Sbjct: 422 KEYVNEKLGDLVDDEDLSRFIL 443


>gi|94309077|ref|YP_582287.1| ATP-dependent protease ATP-binding subunit HslU [Cupriavidus
           metallidurans CH34]
 gi|93352929|gb|ABF07018.1| molecular chaperone and ATPase component of HslUV protease
           [Cupriavidus metallidurans CH34]
          Length = 439

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 18/444 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRTKA 120

Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+R+LD L+           +   SNTR+VFRKKLR+GE+ +K+I++EV   S+ +
Sbjct: 121 EDAAEDRLLDVLLPPPRDIGFAQHEEKDSNTRQVFRKKLREGELDEKDIELEV---SAGM 177

Query: 177 SNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            N DI G    G+ +++E    +   +G G+K + +M V+  +  L+ +E+ +L++ + +
Sbjct: 178 PNMDIMG--PPGMEDMTEQIRSMFAGLGQGKKARRKMKVKDAFKLLIDEEAAKLVNEEEL 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG I T
Sbjct: 236 KHKAIANVEQNGIVFLDEIDKIASRSEVGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY+ L+
Sbjct: 296 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQALL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L F+ D I  LA++A ++N  V +IGARRL TVMER+LED+SF A+    +TV 
Sbjct: 356 KTEEVELQFSPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSGETVT 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA YV   +GD     D+  ++L
Sbjct: 416 VDAAYVDARLGDLAGNEDLSRYVL 439


>gi|240947864|ref|ZP_04752304.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor
           NM305]
 gi|240297826|gb|EER48262.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor
           NM305]
          Length = 440

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          + ++  S+TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNIQESDNSSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   R KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNRTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|157803951|ref|YP_001492500.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           canadensis str. McKiel]
 gi|166221603|sp|A8EZD2|HSLU_RICCK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157785214|gb|ABV73715.1| hypothetical protein A1E_03940 [Rickettsia canadensis str. McKiel]
          Length = 450

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 321/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPAQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE++D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKVLNGELNDTEIEISVADTAPIGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G+S+G+LNL ++  + +GS + K  +M V++    ++ +E ++LID + + + +I + 
Sbjct: 193 MPGSSMGVLNLGDMIGRALGSSKTKTKKMLVKEAMAIIIPEELEKLIDQEKIIQQAITLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASAPSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGQVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFTASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDQFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  FIL
Sbjct: 433 ENQLSKIITNLDLAKFIL 450


>gi|239947566|ref|ZP_04699319.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921842|gb|EER21866.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+ VAIALRNR RR++L  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKVVAIALRNRCRRKRLEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPMRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS++++K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKDKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|37681200|ref|NP_935809.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus
           YJ016]
 gi|37199951|dbj|BAC95780.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio vulnificus
           YJ016]
          Length = 445

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 313/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 66  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 125

Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+       G+      TSNTR++FRKKLR+G++ DKEI+I VA     
Sbjct: 126 EELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQMG 185

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ ++ ++  +  L+ +E+ +L++ D +  
Sbjct: 186 VEIMAPPGMEEM-TNQLQGMFQSLAGNTSKKR-KLKIKDAFKALIEEEAAKLVNQDELKE 243

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 244 QAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 303

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LMKT
Sbjct: 304 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMKT 363

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A++      VID
Sbjct: 364 EDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVID 423

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+F  + D+  FIL
Sbjct: 424 AAYVQQRLGEFVEDEDLSRFIL 445


>gi|242241192|ref|YP_002989373.1| heat shock protein HslVU, ATPase HslU [Dickeya dadantii Ech703]
 gi|242133249|gb|ACS87551.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech703]
          Length = 443

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLEEDLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+   ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADAAIKMVRQLAVEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD LV       G+T  SN     R+ FRKKLR+G++ DKEI+IE+A     
Sbjct: 124 EELAEERILDVLVPPAKNNWGQTEESNEPSPARQAFRKKLREGQLDDKEIEIELAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  + +L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIKDAFKQLVEEEAGKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  + L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSAALTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F +D I  +A+ A  +N    +IGARRL TV+ER++EDIS++AS++  +TV ID
Sbjct: 362 EGVNIEFAQDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDISYNASEMGGQTVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443


>gi|27364751|ref|NP_760279.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio vulnificus
           CMCP6]
 gi|320155143|ref|YP_004187522.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           vulnificus MO6-24/O]
 gi|31340168|sp|Q8DCP4|HSLU_VIBVU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|61213544|sp|Q7MH56|HSLU_VIBVY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27360896|gb|AAO09806.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio vulnificus
           CMCP6]
 gi|319930455|gb|ADV85319.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           vulnificus MO6-24/O]
          Length = 443

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 313/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+       G+      TSNTR++FRKKLR+G++ DKEI+I VA     
Sbjct: 124 EELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ ++ ++  +  L+ +E+ +L++ D +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQSLAGNTSKKR-KLKIKDAFKALIEEEAAKLVNQDELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A++      VID
Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+F  + D+  FIL
Sbjct: 422 AAYVQQRLGEFVEDEDLSRFIL 443


>gi|229587959|ref|YP_002870078.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens SBW25]
 gi|259491377|sp|C3K8V3|HSLU_PSEFS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229359825|emb|CAY46675.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens SBW25]
          Length = 445

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V  
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKLLREQEMTKVSH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+              + SNTR++FRK+LR+G++ DKEI+IEVA+ S
Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPASDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---QE 409
           +KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL   Q 
Sbjct: 357 LKTEGLGIEFQPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGAQN 416

Query: 410 KTVV-IDAEYVRLHIGDFPSETDMYHFIL 437
             V+ IDA+YV  H+G+     D+  +IL
Sbjct: 417 GEVIKIDADYVNSHLGELAQNEDLSRYIL 445


>gi|157964396|ref|YP_001499220.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           massiliae MTU5]
 gi|167017228|sp|A8F187|HSLU_RICM5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157844172|gb|ABV84673.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia massiliae
           MTU5]
          Length = 450

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE I+RDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIMRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+   S +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGSGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVC 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|222112159|ref|YP_002554423.1| ATP-dependent protease ATP-binding subunit hslu [Acidovorax ebreus
           TPSY]
 gi|254802304|sp|B9MFS2|HSLU_ACIET RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221731603|gb|ACM34423.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax ebreus
           TPSY]
          Length = 446

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 20/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122

Query: 126 ASINAEERILDALV-------------GKTATSNT-REVFRKKLRDGEISDKEIDIEVAD 171
           A   AE+RILD L+             G  A  +T R+VFRKKLR+G++ DKEI+I++AD
Sbjct: 123 AEDAAEDRILDVLIPPARGASVDTARTGDPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182

Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                  F+I  P G       L  +FS+ MG  R++  ++ + +    L+ +E+ +L++
Sbjct: 183 ARP---QFEIMSPAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVN 238

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++   E  GIVF+DE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 239 EEEVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYG 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY
Sbjct: 299 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQY 358

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L++TEG+ LDFT + I  LA +A  +N    +IGARRL TVMER+L+++S+ A+ L  
Sbjct: 359 QALLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TVV+DA YV   +     + D+  +IL
Sbjct: 419 QTVVVDAGYVNARLQSLSQDEDLSRYIL 446


>gi|254787489|ref|YP_003074918.1| ATP-dependent protease ATP-binding subunit HslU [Teredinibacter
           turnerae T7901]
 gi|259491380|sp|C5BRL0|HSLU_TERTT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|237683548|gb|ACR10812.1| heat shock protein HslVU, ATPase subunit HslU [Teredinibacter
           turnerae T7901]
          Length = 438

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/439 (51%), Positives = 318/439 (72%), Gaps = 10/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++I+GQQ AK+AVAIALRNRWRR Q+   LR+E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVSELDKFIVGQQAAKKAVAIALRNRWRRMQVDKSLRNEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I + RE    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDGSIKLFREQEMAKCRYR 122

Query: 126 ASINAEERILDALVGKTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AEERILDAL+    +S       +TR++FRKKLR+G++ DKEI+IE+A T   +  
Sbjct: 123 AMEAAEERILDALLPPARSSGEEQHESSTRQIFRKKLREGDLDDKEIEIEMAATPVGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  M SG+ +K +++V+K + +L  +E+ +LI+ + +   +I
Sbjct: 183 MAPPGMEDM-TSQLQNMFSS-MSSGKTRKAKLTVKKAFKKLTDEEAAKLINEEELKAQAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           +  E  GIVF+DE DK+  RD+ +G  VSREGVQRDLLPL+EG +VSTK+G I TDHILF
Sbjct: 241 EAAEQNGIVFIDEIDKVTKRDNASGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+ +++L  Q++ L+ TEG+
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALSPEDFERILTEPDASLTEQHQALLATEGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L F++D I  +A+ A ++N    +IGARRL TV+E++LE+ SF+ +D +   +V+DA +
Sbjct: 361 SLAFSKDGIRRIAETAFDVNERTENIGARRLHTVLEKLLEEASFN-TDGESVEIVVDAAF 419

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +G+  +  D+  +IL
Sbjct: 420 VDKQLGELATNEDLSRYIL 438


>gi|312958527|ref|ZP_07773047.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens WH6]
 gi|311287070|gb|EFQ65631.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens WH6]
          Length = 445

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V  
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVTKVSH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             ++ SNTR++FRK+LR+G++ DKEI+IEVA+ S
Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPSSDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA D+     
Sbjct: 357 LKTEGLGIEFQADGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDMAGAQN 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + + IDA+YV  H+G+     D+  +IL
Sbjct: 417 GEAIKIDADYVNSHLGELAQNEDLSRYIL 445


>gi|300714743|ref|YP_003739546.1| ATP-dependent hsl protease ATP-binding protein HslU [Erwinia
           billingiae Eb661]
 gi|299060579|emb|CAX57686.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           billingiae Eb661]
          Length = 443

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ +AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDNAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSALKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+     +             R+ FRKKLR+G+++DKEI+I++A +S  
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEAEAAPSAARQSFRKKLREGQLNDKEIEIDLASSSMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G+ ++K  ++ +Q+    L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TNQLQSMFQN-LGNQKQKPRKLKIQEAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LMKT
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTHDFERILTEPSASVTVQYKALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  ++  ID
Sbjct: 362 EGVDIHFTEDGISKIAAAAWQVNETAENIGARRLHTVLERLMEDISYDASDLNGQSFTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443


>gi|326315560|ref|YP_004233232.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372396|gb|ADX44665.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 438

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/438 (52%), Positives = 309/438 (70%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPGLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122

Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILDAL+       + A S  R+VFRKKLR+G++ DKEI+I++AD    +   
Sbjct: 123 AEDAAEDRILDALIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDLADARPQLEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L  +FS+ MG  R+K  ++ + +    L  +E+ +L++ + V   ++Q
Sbjct: 183 G-PQGMEEMAEQLRGMFSQ-MGQERRKTRKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI
Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ TEG+ 
Sbjct: 301 ASGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F  + I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV IDA YV
Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRIDAAYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +       D+  +IL
Sbjct: 421 DGRLASLSQNEDLSRYIL 438


>gi|225850153|ref|YP_002730387.1| ATP-dependent protease ATP-binding subunit HslU [Persephonella
           marina EX-H1]
 gi|254802313|sp|C0QUM2|HSLU_PERMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225645468|gb|ACO03654.1| ATP-dependent protease HslVU, ATPase subunit [Persephonella marina
           EX-H1]
          Length = 448

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/449 (50%), Positives = 325/449 (72%), Gaps = 13/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+L  + +P++IV ELD+YI+GQ++AK+AVAIALRNRWRR +LP DLRDE++PKNIL++G
Sbjct: 1   MQLREDLTPKQIVEELDKYIVGQKEAKKAVAIALRNRWRRHKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIR+L + +  +V+  + +
Sbjct: 61  PTGVGKTEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRELAEASFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVG------------KTATSNTREVFRKKLRDGEISDKEIDIE 168
           +VRE+A   AEE+ILD LV             +  TS  RE FR+ LR+GE+ ++ ++I+
Sbjct: 121 KVREKAKEIAEEKILDYLVPMRVKRYGTLETFEEETSPAREKFRQMLRNGELDERTVEID 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V +    +    I  G       L +LFS +  + RK++ +M+V++    L + E+++LI
Sbjct: 181 VEEKGVSVVGGVIAPGLEDIENQLKDLFSSLAPTKRKRR-KMTVREAMRVLEQQEAEKLI 239

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           DMD V  +++   EN+GIVF+DE DK+  + +G+   VSREGVQRDLLP+VEG++VSTKY
Sbjct: 240 DMDEVASEAVYRAENFGIVFIDEIDKVAGKSTGSSPDVSREGVQRDLLPIVEGTTVSTKY 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF  ILT  ++ LI Q
Sbjct: 300 GPVKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELQPLTKDDFVKILTQPKNALIKQ 359

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK LM TEG+ ++FT+D+I+A+A++A  +N    +IGARRL T++ER++ED SF A DL+
Sbjct: 360 YKALMATEGVDIEFTDDAIEAIAEIAEQVNEKTENIGARRLHTILERIMEDYSFEAPDLK 419

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + ++ID + +R  +GD     D+  +IL
Sbjct: 420 GQHIIIDEKVIRSKLGDIIQSEDLTRYIL 448


>gi|116626379|ref|YP_828535.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229541|gb|ABJ88250.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 452

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/436 (50%), Positives = 323/436 (74%), Gaps = 7/436 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++++GQ +AKRAVAIALRNR RRQ+L  ++ +E+MPKNIL++GPTGVGK
Sbjct: 19  LTPREIVRELDKHVVGQAEAKRAVAIALRNRIRRQKLAPEMAEEVMPKNILMIGPTGVGK 78

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++RRLARLA +PF+KVE +KFTE+GYVGR+VE +IRDLVD++I++VRE R DEV ++A
Sbjct: 79  TELARRLARLANSPFLKVEASKFTEVGYVGRDVESMIRDLVDISIDMVREERLDEVADRA 138

Query: 127 SINAEERILDALVGKTATSN-----TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            +NAEER+LD L+     ++     TRE  R++LR+G++ ++ ++++V D          
Sbjct: 139 EVNAEERLLDLLMPPQPEASESLERTREKLRERLREGKLDERLVELDVKDRPPTFEITTN 198

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            G   +GI NL ++   + G   +++ +M V +    L+++E  +LIDMD V R +++ V
Sbjct: 199 AGIEEMGI-NLKDMLPNLFGQKSRRR-KMRVAEALDYLVQEEEQKLIDMDQVTRAALERV 256

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GI+FLDE DKI  R+SG+G  VSREGVQRD+LP+VEG++V+T+YG + TDHILFIA+
Sbjct: 257 ESSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTTVNTRYGFVRTDHILFIAA 316

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DL+PE+QGRFP+RV LKSL+  DF  IL + ++ L  QY  L++TEGI L 
Sbjct: 317 GAFHVSKPSDLIPELQGRFPIRVELKSLSVEDFIRILKEPKNALAKQYVALLETEGIKLI 376

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
             +D+++ +A  A  +N +  +IGARRL T+ME++LE++SF+  DL++KTV +DA YVR 
Sbjct: 377 LADDALEEVAKFAAQVNESSENIGARRLHTIMEKLLEEVSFAGPDLKKKTVKVDANYVRK 436

Query: 422 HIGDFPSETDMYHFIL 437
            + D   + D+  +IL
Sbjct: 437 QLADIVKDQDLSRYIL 452


>gi|188532279|ref|YP_001906076.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia
           tasmaniensis Et1/99]
 gi|238689696|sp|B2VES3|HSLU_ERWT9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188027321|emb|CAO95164.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           tasmaniensis Et1/99]
          Length = 443

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D  R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIDRNRNRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+  T    S+ R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQNETPAEPSSARQSFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQKQKPR-KLKIKEAMKLLVEEEAAKLVNQEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVNITFTPDGISKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|146305569|ref|YP_001186034.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina
           ymp]
 gi|166221595|sp|A4XPN6|HSLU_PSEMY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145573770|gb|ABP83302.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           mendocina ymp]
          Length = 446

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/449 (51%), Positives = 316/449 (70%), Gaps = 19/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            ++  SNTR++FRK+LR+G++ DKEIDIEVA++ 
Sbjct: 121 RAEDAAEERILDALLPPARQAFGDEPVRSEDSNTRQLFRKRLREGQLDDKEIDIEVAESP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDT 232
             +     PG   +    L  LF+ +    +K +          +L+RDE + RL++ + 
Sbjct: 181 MGVEIMTPPGMEEM-TSQLQNLFAGLGKGKKKSRKLKVADAL--KLVRDEEAARLVNEEE 237

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 238 LKARALEAVEQHGIVFIDEIDKVAKRGNTGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 297

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY  L
Sbjct: 298 TDHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAAL 357

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-- 410
           +KTEG+ ++F E+ I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL  +  
Sbjct: 358 LKTEGLNIEFAEEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQS 417

Query: 411 --TVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA YV  H+G+   + D+  +IL
Sbjct: 418 GEPIRIDAAYVNGHLGELAQDEDLSRYIL 446


>gi|238760315|ref|ZP_04621457.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           aldovae ATCC 35236]
 gi|238701443|gb|EEP94018.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           aldovae ATCC 35236]
          Length = 443

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+   +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRQQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQADETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVDFTREGIRKIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443


>gi|148557271|ref|YP_001264853.1| ATP-dependent protease ATP-binding subunit HslU [Sphingomonas
           wittichii RW1]
 gi|148502461|gb|ABQ70715.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas
           wittichii RW1]
          Length = 433

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/433 (53%), Positives = 318/433 (73%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV+ LD +I+GQ DAK+AVA+ALRNRWRRQ+LP  LRDE+ PKNIL++GPTG G
Sbjct: 4   NLTPKAIVAALDAHIVGQADAKKAVAVALRNRWRRQRLPETLRDEVTPKNILMIGPTGCG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ A+ + +E RR  V+++
Sbjct: 64  KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKERRRAAVKDK 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           A   A  R+LDALVGK A+  TR  FR++  D ++ DKEI+IEV D+       +IPG G
Sbjct: 124 AEEAAMARLLDALVGKDASEATRMAFRQRFEDHQLDDKEIEIEVEDSGG--MPLEIPGMG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG++NL ++  K  G GR K+ +M+V+  + +L+ +E+D+ +D D V R ++Q  E  
Sbjct: 182 GQVGMINLGDMMGKAFGQGRTKRRKMTVRAAWSKLVDEEADKRLDQDEVSRVALQDAEQN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF
Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L ++DF  IL+DT ++L  QY+ L+ TEG+ + FT+
Sbjct: 301 HVAKPSDLLPELQGRLPIRVELKALTEADFVRILSDTRASLTEQYRALIGTEGVEIGFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I A+A +A  +N  + +IGARRL TVME++LE++SF A D +   + IDA YV   + 
Sbjct: 361 DGIAAIAKIAAEVNGQIENIGARRLSTVMEKLLEEVSFDAEDRKGTALTIDAAYVDAQLR 420

Query: 425 DFPSETDMYHFIL 437
           +    TD+  ++L
Sbjct: 421 EVARNTDLSKYVL 433


>gi|88705213|ref|ZP_01102924.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter
           litoralis KT71]
 gi|88700303|gb|EAQ97411.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter
           litoralis KT71]
          Length = 442

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 310/445 (69%), Gaps = 18/445 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEETLRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++A+ ++RE   +++R +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMAVKMLREQAMEKMRFR 122

Query: 126 ASINAEERILDALV-------GKTATSN--TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILD L+       G  A+    TR++ RKKLR+G++ +KEID+E+    S  
Sbjct: 123 AEEAAEERILDILLPGARDAKGDAASQGDGTRQLLRKKLREGDLDEKEIDLEI----STP 178

Query: 177 SNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           SN +I  P G       L  +FS  M   + K  RM ++  +  L  +E+ +L++ D + 
Sbjct: 179 SNVEISAPPGMEEMTNQLQSMFSN-MSRSQPKSRRMPIKAAFAALCDEEAAKLVNEDEIK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + ++Q  E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG +VSTKYG + TD
Sbjct: 238 QQAVQAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+  DFR IL + ++ L  QY  L+ 
Sbjct: 298 HILFIASGAFHLSKPSDLIPELQGRLPIRVELAALSPEDFRRILVEPDAALTRQYSALLG 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTV 412
           TEG+ L+FTED I+ +A++A  LN +  +IGARRL TVMER+LED SF A+D  L    +
Sbjct: 358 TEGMSLEFTEDGIERIAELAWQLNESTENIGARRLHTVMERLLEDASFKAADDGLSGSVL 417

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +DA YV   + D   + D+  FIL
Sbjct: 418 AVDAAYVDAQLSDLAMDEDLSKFIL 442


>gi|254521403|ref|ZP_05133458.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp.
           SKA14]
 gi|219718994|gb|EED37519.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp.
           SKA14]
          Length = 457

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/451 (51%), Positives = 320/451 (70%), Gaps = 22/451 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVG
Sbjct: 10  TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR Q
Sbjct: 70  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129

Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168
           A   AE+RILDAL+ +                +A  N TR  FRK LR+GE+ ++EI+++
Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPDVARNEPSAQDNETRIKFRKMLRNGELDEREIELD 189

Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +A + S DI     PG   +G   L  +F+ + G  +  K  ++++   P L+ +E+ +L
Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKL 246

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++ D +   +I+  E +GIVF+DE DK+  R DS  G  VSREGVQRDLLPLVEGS+VST
Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDSVGGGDVSREGVQRDLLPLVEGSNVST 306

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ L 
Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALT 366

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ + FT D+I+ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 367 KQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +T+ ID+ YV  H+G+   + D+  +IL
Sbjct: 427 RDGETLAIDSAYVDAHLGELVQDPDLSRYIL 457


>gi|238650768|ref|YP_002916623.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
 gi|259491379|sp|C4K1X4|HSLU_RICPU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238624866|gb|ACR47572.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
          Length = 450

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|310766031|gb|ADP10981.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia sp.
           Ejp617]
          Length = 443

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQNGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+                S  R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++++++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQQQKPR-KLTIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|224369849|ref|YP_002604013.1| ATP-dependent protease ATP-binding subunit HslU [Desulfobacterium
           autotrophicum HRM2]
 gi|259491370|sp|C0QJ36|HSLU_DESAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|223692566|gb|ACN15849.1| HslU [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/453 (50%), Positives = 325/453 (71%), Gaps = 23/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P EIV ELDRYIIGQ++AK++VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   DLKPMEIVRELDRYIIGQKNAKKSVAIALRNRWRRRQVPDDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  +PF KVE +KFTE+GYVGR+VE +IRDL+++ +N ++  +++EV+E+
Sbjct: 63  KTEIARRLARLTDSPFYKVEASKFTEVGYVGRDVESMIRDLMELTVNTLKVRQQEEVQEK 122

Query: 126 ASINAEERILDALV-------GKTATS-------------NTREVFRKKLRDGEISDKEI 165
           A+  AEERILD L+       G T T              +TRE  RK L +G++  + +
Sbjct: 123 AAAMAEERILDLLLPESGGPEGATLTEPHLEVVSSSSSKSSTREKLRKMLNNGKLDSRFV 182

Query: 166 DIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           DI+V   +S  I  F   G   +GI N+ ++   ++    K++ ++ V +    L +DE+
Sbjct: 183 DIDVTGKASPMIEIFSNTGMEEMGI-NMKDMLGNLLPKNTKRR-KVKVAEAMKILTQDEA 240

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
             L+DM+ V  D+++MVE  GI+FLDE DKI  + +  G  VS+EGVQRDLLP+VEGSSV
Sbjct: 241 AHLVDMEKVTADAVEMVEQSGIIFLDEIDKIAGKGNSQGPEVSKEGVQRDLLPIVEGSSV 300

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL K +F  ILT+ ++ 
Sbjct: 301 PTKYGTVKTDHILFIASGAFHIAKPSDLIPELQGRFPIRVELTSLGKDEFVRILTEPKNA 360

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LILQY  L++TEG+ L+FTED+ID +A +AV++N    +IGARRL T+ME++LE+I F A
Sbjct: 361 LILQYIALLRTEGVELEFTEDAIDKIASIAVDVNERTENIGARRLHTIMEKLLEEILFHA 420

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D++EK +V+DA++V   + +   + D+  +IL
Sbjct: 421 PDVEEKKMVVDADFVDKQLMEIVKDEDLSRYIL 453


>gi|221065128|ref|ZP_03541233.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni KF-1]
 gi|264680256|ref|YP_003280166.1| heat shock protein HslVU, ATPase HslU [Comamonas testosteroni
           CNB-2]
 gi|299533128|ref|ZP_07046513.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas
           testosteroni S44]
 gi|220710151|gb|EED65519.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni KF-1]
 gi|262210772|gb|ACY34870.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni CNB-2]
 gi|298718905|gb|EFI59877.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas
           testosteroni S44]
          Length = 439

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/441 (51%), Positives = 312/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELD++I+GQ  AKRAV+IALRNRWRRQQ+P  LR E+ PKNIL++GPT
Sbjct: 1   MSSAMTPQEIVSELDKHIVGQHGAKRAVSIALRNRWRRQQVPEGLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+   RES   ++
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTRESDMKKM 120

Query: 123 REQASINAEERILDALV-----GKTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AEERILD L+     G+    NT R+VFRKKLR+G++ DKEI+I++A+    +
Sbjct: 121 RARAEDAAEERILDVLIPQARTGEVPADNTARQVFRKKLREGQLDDKEIEIDIAEQMPQV 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  MG  ++K  ++ + +    L  +E+ ++++ + V   
Sbjct: 181 QIMG-PQGMEEMAEQLRGMFSH-MGQEKRKTRKLKIAEALKLLTDEEAAKMVNEEDVKTR 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I   E  GIVF+DE DK+  R   +G  VSR+GVQRDLLPLVEG+SVSTKYG + TDHI
Sbjct: 239 AIANAEQNGIVFIDEIDKVATRQETSGSDVSRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  IL  T ++L+ QY+ L+ TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILMQTHASLVKQYQALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+F  + I  LA +A ++N +  +IGARRL TVMER+L+++SF A+ L  +TVVIDA
Sbjct: 359 GVTLEFKPEGITRLATIAFDVNESTENIGARRLSTVMERLLDEVSFDAAKLSGQTVVIDA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  FIL
Sbjct: 419 AYVDQRLQVLSKDEDLSRFIL 439


>gi|88858829|ref|ZP_01133470.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata
           D2]
 gi|88819055|gb|EAR28869.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata
           D2]
          Length = 441

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 311/440 (70%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLPEDLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI +VRE +  +VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLADIAIKMVREQQTKKVRHRA 123

Query: 127 SINAEERILDALV---------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERIL+AL+          +T  S+TR+ FRKKLR+G++ DKEI+I++A     + 
Sbjct: 124 EEAAEERILEALLPSAKDTWGEAETKDSSTRQTFRKKLREGQLDDKEIEIDLAQAQMGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   +G+ ++ K ++ ++     L+ +E+ +L++ + +   +
Sbjct: 184 IMAPPGMEDM-TNQLQSMFQN-LGNEKRTKRKLKIKDAIKLLIEEEASKLVNPEELKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG++VSTK+G I TDHIL
Sbjct: 242 IHAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVSTKHGMIKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           F+ASGAF +S+P+DL+PE+QGR P+RV L  L   DF+ ILT+  ++L  QY+ LM TEG
Sbjct: 302 FVASGAFQMSKPSDLIPELQGRLPIRVELSPLTAHDFKRILTEPNASLTEQYQALMGTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++F E++I+ +A+ A  +N    +IGARRL TVME+++E+IS+ AS+     +VIDA 
Sbjct: 362 VKVEFNEEAIEKIAEAAWRVNEKTENIGARRLHTVMEKLMEEISYDASEKSGDHIVIDAA 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V  ++G    + D+  FIL
Sbjct: 422 FVTKYLGTLVEDEDLSRFIL 441


>gi|121533768|ref|ZP_01665595.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus
           carboxydivorans Nor1]
 gi|121307759|gb|EAX48674.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus
           carboxydivorans Nor1]
          Length = 462

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/463 (47%), Positives = 318/463 (68%), Gaps = 31/463 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P++IV++L++YI+GQ +AK++VA+ALRNRWR +QLPA+L++E++PKNIL++GPTGV
Sbjct: 1   MELTPKQIVAQLNKYIVGQHEAKKSVAVALRNRWRSKQLPAELKEEIIPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTEIGYVGR+VE ++RDLV+ AI +V++ +  EV +
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEIGYVGRDVESMVRDLVETAIRMVKQEKMLEVND 120

Query: 125 QASINAEERILDAL---VGKTATSNT---------------------------REVFRKK 154
           +A   A+ERI+D     V K    N                            RE +RK+
Sbjct: 121 RARELADERIIDYFYPTVKKEPPRNPFEILFTGGISQQKEQQPVSETTGHDVGREWWRKR 180

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L+ GE+ D+ I+I V D S  +       G     +N+ ++   ++   +KK+ +++V  
Sbjct: 181 LKQGELEDELIEITVEDNSHPMVGMFAGAGIEEMGINIQDMLGSLLPKKQKKR-KVTVAN 239

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
                 ++E+ +LIDMD V  ++I   ENYGI+FLDE DKI  R    G  VSREGVQRD
Sbjct: 240 ARKIFTQEEAQKLIDMDEVIAEAIYQAENYGIIFLDEIDKIAGRGHSTGPDVSREGVQRD 299

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF
Sbjct: 300 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELTSLSKEDF 359

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           R ILT+  + LI QY  L+ TEGI ++FTED+ID LA++A  +N+   +IGARRL T++E
Sbjct: 360 RQILTEPANALIKQYTGLLATEGIKIEFTEDAIDELAEIACKVNAQTENIGARRLHTILE 419

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED++F A DL EK +VID +YV+  +G    + D+ H+IL
Sbjct: 420 KLLEDLAFEAPDLTEKHIVIDRQYVQSKLGHIIVDQDLSHYIL 462


>gi|188590938|ref|YP_001795538.1| ATP-dependent protease ATP-binding subunit hslu [Cupriavidus
           taiwanensis LMG 19424]
 gi|238692923|sp|B2AGB7|HSLU_CUPTR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170937832|emb|CAP62816.1| ATPase component of the HslUV protease, molecular chaperone
           [Cupriavidus taiwanensis LMG 19424]
          Length = 443

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/448 (51%), Positives = 319/448 (71%), Gaps = 18/448 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SNTR+VFRKKLR+G++ DK+I++EV   
Sbjct: 121 RTKAEDAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEV--- 177

Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           S+ + + DI G    G+ +++E    +   +G G+K + +M V++ +  L+ +E+ +L++
Sbjct: 178 SAGMPSMDIMGPP--GMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVN 235

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + +   +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG
Sbjct: 236 DEELKHKAIANVEQNGIVFLDEIDKIASRSDIGGGEVSRQGVQRDLLPLVEGTTVNTKYG 295

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQY 355

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L F  D I  LA++A ++N  V +IGARRL TVMER+LED+SF AS    
Sbjct: 356 QALLNTEEVNLVFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSG 415

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   +GD     D+  ++L
Sbjct: 416 ETVTIDAAYVEERLGDLAGNEDLSRYVL 443


>gi|92112732|ref|YP_572660.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|123387605|sp|Q1QZZ7|HSLU_CHRSD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91795822|gb|ABE57961.1| heat shock protein HslVU, ATPase subunit HslU [Chromohalobacter
           salexigens DSM 3043]
          Length = 441

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/444 (52%), Positives = 315/444 (70%), Gaps = 17/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV  LD+YIIGQQ+AKR+VAIALRNRWRR QL   LR E++PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHALDQYIIGQQEAKRSVAIALRNRWRRMQLDDSLRGEVVPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +VRE  ++EV  +
Sbjct: 63  KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEMAMKMVREQAKEEVAHK 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A    EERILDAL+ +            S+TR+ FRKKLR+G++ DKEIDIE+       
Sbjct: 123 AEDATEERILDALLPRPRGSEYDHARDESSTRQTFRKKLREGQLDDKEIDIEITPQG--- 179

Query: 177 SNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             FDI  P G       L  +FS  MG  + +  R++V++    L  +E+ +L++ + + 
Sbjct: 180 GGFDISAPPGMEEMTSQLQSMFSN-MGKQKSETRRVTVEEARRLLHDEEAAKLVNEEQIK 238

Query: 235 RDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVFLDE DK+  R DSG+G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 239 HRAIEAVEQNGIVFLDEIDKVAKRGDSGSGGDVSREGVQRDLLPLIEGSTVSTKHGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  + L  QY+ L+
Sbjct: 299 DHILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPSAALTKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ ++FT++ I  +A++A  +N    +IGARRL TVMER+LE+ SF   D+    + 
Sbjct: 359 ATDGLEVNFTDEGIARIAEIAWQVNDGTENIGARRLHTVMERLLEEPSFQGGDMA-SPLT 417

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   +G+  ++ D+  +IL
Sbjct: 418 IDAAYVDEQLGELATDEDLSRYIL 441


>gi|292486619|ref|YP_003529489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora CFBP1430]
 gi|292897854|ref|YP_003537223.1| ATP-dependent Hsl protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291197702|emb|CBJ44797.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Erwinia amylovora ATCC 49946]
 gi|291552036|emb|CBA19073.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora CFBP1430]
 gi|312170682|emb|CBX78945.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora ATCC BAA-2158]
          Length = 443

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD LV                S  R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLVPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAMSGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQKQKPR-KLKIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|296105371|ref|YP_003615517.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059830|gb|ADF64568.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 443

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF ++ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ ID
Sbjct: 362 EGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQTITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVGKHLDALVADEDLSRFIL 443


>gi|258590896|emb|CBE67191.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone; heat shock protein [NC10 bacterium 'Dutch
           sediment']
          Length = 451

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/450 (49%), Positives = 319/450 (70%), Gaps = 19/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD+YIIGQ++AKRAVAIALRNRWRRQ+LPA+LRDE+ PKNI+++GPTGVG
Sbjct: 3   QLTPRQIVAELDKYIIGQKEAKRAVAIALRNRWRRQKLPAELRDEVAPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE +K+TE+GYVGR+VE ++RDL ++A+++V+  R   V+E+
Sbjct: 63  KTEIARRLAKLVDAPFIKVEASKYTEVGYVGRDVESMVRDLTELAVDMVKAERIKGVQER 122

Query: 126 ASINAEERILDALV------------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
           A   AEER+LD L+                    T+ + TRE  RK+L +G++ D+ +++
Sbjct: 123 ARELAEERLLDLLLPVSRMPTTPGVEQTLDASTVTSAAETREKLRKRLHEGKLDDRTVEL 182

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV D +  +       G     +N+ E+   ++   R K+ ++ +++    L ++E+D+L
Sbjct: 183 EVKDRAMPMVEIFSGAGMEGMDINMKEMLGSLLPQ-RTKRRKVKIREAQRILAQEEADKL 241

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ID+D V  ++++ VE+ GIVFLDE DKI  RDSG+G  VSR+GVQRDLLP+VEG +V+TK
Sbjct: 242 IDVDEVRSEAVRRVEDSGIVFLDEIDKIAGRDSGHGPDVSRQGVQRDLLPIVEGCTVNTK 301

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF  ILT+ ++ LI 
Sbjct: 302 YGLVRTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELASLTQDDFVRILTEPQNALIK 361

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++TE + LDFTED+I  LA  A  +N    +IGARRL T++ER+L++ISF A  +
Sbjct: 362 QYTALLETEEVTLDFTEDAIQELAATACAVNQATENIGARRLYTILERLLDEISFEAPAM 421

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q   V I+A YVR  + +     D+  +IL
Sbjct: 422 QGAQVTINAAYVRERLQEIVKSEDLSRYIL 451


>gi|269103958|ref|ZP_06156655.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163856|gb|EEZ42352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 443

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP  LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEALRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVRYRA 123

Query: 127 SINAEERILDALV-------GKTATSNT----REVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+       G+   S+T    R+ FRKKLR+G++ DKEI++++A     
Sbjct: 124 EELAEDRILDVLLPPVRDAWGQNENSDTNSATRQSFRKKLREGQLDDKEIELDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ ++ ++     +  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KLKIKDALKAVTEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIHAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY+ LM T
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPNASLTEQYRALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTE+ IDALAD A  +N    +IGARRL TVMER++ED+S+ A++   ++  I 
Sbjct: 362 ESVNIEFTEEGIDALADAAWQVNERTENIGARRLHTVMERLMEDLSYDATEKSGESFKIT 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV+  +G+F  + D+  FIL
Sbjct: 422 AEYVKERLGEFVEDEDLSRFIL 443


>gi|241664961|ref|YP_002983321.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia
           pickettii 12D]
 gi|240866988|gb|ACS64649.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii
           12D]
          Length = 443

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/447 (51%), Positives = 315/447 (70%), Gaps = 16/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+RILD L+           +   S  R+ FRKKLR+G++ DKEI++EV   
Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEV--- 177

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           S+ + + DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ 
Sbjct: 178 SAGVPSMDIMGPPGMEDMTDQIRSMFAG-LGQGKKNRRKMKVSEAFKLLIDEEAAKLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D + + ++  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG 
Sbjct: 237 DELKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYGM 296

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT T+++L  QY+
Sbjct: 297 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVDDFRAILTQTDASLTKQYQ 356

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+KTEG+ L F ED I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +
Sbjct: 357 ALLKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGE 416

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +     D+  ++L
Sbjct: 417 TVTIDAAYVDERLNELSGNEDLSRYVL 443


>gi|163782102|ref|ZP_02177101.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882634|gb|EDP76139.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 449

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/445 (49%), Positives = 323/445 (72%), Gaps = 11/445 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L    +P+  V EL+++++GQ++AK+AVAIALRNRWRRQ+LP  +RDE+ PKNIL++GP
Sbjct: 7   ELLEELTPKRTVEELNKFVVGQEEAKKAVAIALRNRWRRQKLPEYIRDEVAPKNILMIGP 66

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA L  APF+KVE TK+TE+GYVGR+VE ++R+L +V+  +V+  + + 
Sbjct: 67  TGVGKTEIARRLAGLIKAPFVKVEATKYTEVGYVGRDVESMVRELAEVSYQMVKREKVER 126

Query: 122 VREQASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADT 172
           VRE+A   AEERILD LV +  TS           RE  R+KLR GE+ +K I+I+V + 
Sbjct: 127 VRERARKLAEERILDYLVPQQFTSFGIRESQDAGKREELREKLRRGELDEKVIEIDVQEK 186

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     P G       L E+FS +M S +++K+R  V++    L ++E+++LIDM+ 
Sbjct: 187 AVPMVGIAGPPGFEELENQLREMFSNLMPSKKRRKLR--VKEALHVLEQEEAEKLIDMEE 244

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V R+++   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP++EG++V+TKYG++ 
Sbjct: 245 VAREAVFRAENFGIIFIDEIDKIAVKTPGTGPGVSREGVQRDLLPILEGTTVNTKYGAVK 304

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF  ILT+ E+ L  QY EL
Sbjct: 305 TDHILFIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFVKILTEPENALTKQYIEL 364

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTEG+ ++FTED+I+ +A ++ + N+   +IGARRL TVMER+LEDISF+A D+  + +
Sbjct: 365 LKTEGVEIEFTEDAIEEIARISEDANNRTENIGARRLHTVMERLLEDISFNAPDMSGQHI 424

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +ID+++VR  +     + ++  +IL
Sbjct: 425 IIDSKFVRAKLEGIVKDEELSRYIL 449


>gi|94967243|ref|YP_589291.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549293|gb|ABF39217.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Koribacter versatilis Ellin345]
          Length = 472

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/457 (49%), Positives = 328/457 (71%), Gaps = 29/457 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+Y++GQ +AKRAVAIALRNR RRQ+L  DL +E++PKNI+++GPTGVGK
Sbjct: 19  LTPREIVAELDKYVVGQHEAKRAVAIALRNRMRRQRLTPDLAEEIIPKNIIMIGPTGVGK 78

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PF+KVE +KFTE+GYVGR+VE +IRDLV++AI+++RE + D+V ++A
Sbjct: 79  TEIARRLAKLANSPFLKVEASKFTEVGYVGRDVESMIRDLVEIAIDMIREEKLDDVADKA 138

Query: 127 SINAEERILDA------------------------LVGKTATSNTREVFRKKLRDGEISD 162
            +NAEER+LD                         L G    S TRE  R++LR+G++ +
Sbjct: 139 EMNAEERLLDLLLPSSPQPAAAHEAGAGFTQGQLELPGDGGGSRTREKLRQQLREGKLDE 198

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           + ++++V +   +   F+I     V  +  N+ ++   + GS R KK +M V + +  L+
Sbjct: 199 RTVELDVRE--KNFPAFEIISNQGVEEMDINMKDMLPNIFGS-RTKKRKMKVNEAFDYLI 255

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           ++E  RLIDM+ V R +++ VE  GI+FLDE DKI  R+ G+G  VSREGVQRD+LP+VE
Sbjct: 256 QEEEQRLIDMEQVQRVAVERVEQSGIIFLDEIDKIAGREGGHGPDVSREGVQRDILPIVE 315

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++ +T+YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF  ILT+
Sbjct: 316 GTTCNTRYGMVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLSVADFIKILTE 375

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +S+L+ QY  L++TEG+ L+FT D++D +A+ A  +N    +IGARRL T+ME+VL++I
Sbjct: 376 PKSSLVKQYTALLETEGVKLEFTRDALDEVANFAAIVNEGTENIGARRLHTIMEKVLDEI 435

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SFSA DL+ K V +DAEYVR  +       D+  +IL
Sbjct: 436 SFSAPDLENKNVTVDAEYVRNALVHIVKNQDLSRYIL 472


>gi|77920006|ref|YP_357821.1| ATP-dependent protease ATP-binding subunit HslU [Pelobacter
           carbinolicus DSM 2380]
 gi|123573597|sp|Q3A1V6|HSLU_PELCD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77546089|gb|ABA89651.1| heat shock protein HslVU ATPase subunit HslU [Pelobacter
           carbinolicus DSM 2380]
          Length = 445

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/444 (50%), Positives = 317/444 (71%), Gaps = 13/444 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+  +LRDE+ PKNI+++GPTGVG
Sbjct: 3   NFTPREIVSELDRYIIGQKQAKRAVAVALRNRWRRQQVADELRDEIAPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE +KFTE+GYVGR+VE ++RDL+D+AI ++RE    +VR +
Sbjct: 63  KTEIARRLARLAQAPFIKVEASKFTEVGYVGRDVESMVRDLLDLAIIMIREEEARKVRVK 122

Query: 126 ASINAEERILDALV-----------GKTA-TSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEER+LD L+           G+ A    TR+  RK LR G + ++++++EV    
Sbjct: 123 AEDLAEERLLDLLLPGAQSRDPDLSGEEAGEGGTRDKLRKLLRKGALDERKVELEVQAAQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     P G     +N  E+F  +     K++ ++ V +    L+  E++RL+DM+ V
Sbjct: 183 MPMMEVFTPQGTEEMGINFKEMFGNLFPKKTKRR-QIKVSEAREILIEQEAERLVDMEKV 241

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +  + + VE  GI+F+DE DKI  ++   G  VSREGVQRD+LP+VEGS+VSTKYG + T
Sbjct: 242 NTLARERVEQSGIIFIDEIDKIAGQNGRQGPDVSREGVQRDILPIVEGSTVSTKYGPVKT 301

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+A+GAFHV++P+DL+PE+QGRFP+RV L SL + +F  ILT+ ++ LI QY+ LM
Sbjct: 302 DHILFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLGEEEFFRILTEPKNALIRQYEALM 361

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEGI L FTE++I  +A +A  +NS   +IGARRL T+ME++LE++SF A + +E++V 
Sbjct: 362 ETEGIRLHFTEEAIREIARIATQVNSQTENIGARRLHTIMEKLLEELSFEAPEHREQSVE 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID +YVR  + D   + D+  +IL
Sbjct: 422 IDVDYVRKQLSDIARDEDLSRYIL 445


>gi|67458908|ref|YP_246532.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis
           URRWXCal2]
 gi|75536651|sp|Q4UM53|HSLU_RICFE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|67004441|gb|AAY61367.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia felis
           URRWXCal2]
          Length = 450

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTKKTLAKMEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +G++ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGKLDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++L+ QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLVKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|82703661|ref|YP_413227.1| ATP-dependent protease ATP-binding subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|123768130|sp|Q2Y5Y6|HSLU_NITMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|82411726|gb|ABB75835.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosospira
           multiformis ATCC 25196]
          Length = 443

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++IIGQ  AKR+VAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QLTPREIVHELDKHIIGQDAAKRSVAIALRNRWRRQQVQDPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ A+   RE    ++R +
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEAAVKQSRERETQKMRAR 122

Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A  +AEERILD L+              A S TR+ FRKKLR+GE++DKEI+IE+A   +
Sbjct: 123 AEDHAEERILDVLLPVARETGLQMDSIEAESATRQKFRKKLREGELNDKEIEIELATPHT 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +  F  PG   +    +  +F   +G+ RK+  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 HMEIFAPPGMEEL-TTQIQGMFQN-LGAERKRMRKLKIREAMKLLIDEEASKLVNDEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++Q VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG+++STKYG I TD
Sbjct: 241 LRAVQNVEQNGIVFLDEIDKITSRSETSGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT+T++ L  QY+ L++
Sbjct: 301 HILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSAGDFVQILTNTDACLKRQYEALLE 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ L+FT D++  LA++A  +N    +IGARRL T ME++LED+SF A       VVI
Sbjct: 361 TEGVRLEFTPDAVKRLAEIAFAVNEKTENIGARRLYTAMEKLLEDVSFDAEKHHGDAVVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +GD     D+  ++L
Sbjct: 421 DAAYVDKRLGDLAQSEDLARYVL 443


>gi|288817501|ref|YP_003431848.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288786900|dbj|BAI68647.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751108|gb|ADO44591.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobacter
           thermophilus TK-6]
          Length = 450

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/443 (48%), Positives = 320/443 (72%), Gaps = 10/443 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P+ IV ELD+YI+GQ+ AK+AVAIALRNRWRRQ+LP  +R+E+ PKNIL++GPT
Sbjct: 10  LLEELTPKRIVEELDKYIVGQEQAKKAVAIALRNRWRRQKLPQHIREEVAPKNILMIGPT 69

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APFIKVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +  +V
Sbjct: 70  GVGKTEIARRLAQLIKAPFIKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKIQKV 129

Query: 123 REQASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +E+A   AEERILD LV +  +        +  RE+ R+KLR GE+ +K I+I++ +   
Sbjct: 130 KERAKRAAEERILDYLVPQQLSFGVREQQDTGKRELMREKLRSGELDEKVIEIDLQEKMM 189

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     P G       +  +   +M + +++K++  V++    L ++E+++LIDM+ V 
Sbjct: 190 PMIGIAGPPGLEELEEQIKSMLGNMMPTRKRRKVK--VKEALSLLEQEEAEKLIDMEEVS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           RD+IQ  EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP+VEG++V TKYG + TD
Sbjct: 248 RDAIQRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPIVEGTTVKTKYGPVRTD 307

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L K DF  IL + ++ L  QY EL+K
Sbjct: 308 HILFIAAGAFHMAKPSDLIPELQGRFPIRVELSPLTKEDFVRILKEPKNALTKQYIELLK 367

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I+ +A +A   N+   +IGARRL TVME++LEDISF+A +++ + ++I
Sbjct: 368 TEGVEIEFTDDAIEEIARIAEEANTKTENIGARRLHTVMEKLLEDISFNAPEMEGQHIII 427

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D ++VR  + +   + ++  +IL
Sbjct: 428 DTKFVRAKLENIVRDVELSRYIL 450


>gi|188025489|ref|ZP_02958840.2| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827]
 gi|188023372|gb|EDU61412.1| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827]
          Length = 459

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 19  MTPREIVSELDNYIIGQNKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVGK 78

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+   ++ R +A
Sbjct: 79  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAVKMVRQQSIEKNRYRA 138

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEVA     
Sbjct: 139 EELAEERILDVLIPPAKNNWGQSEPVDEQSPARQSFRKKLREGQLDDKEIEIEVAAAPMG 198

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M +++ +  L+ +E+ +L++ + +  
Sbjct: 199 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKEAFKLLVEEEAAKLVNPEELKE 256

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE +GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG +VSTK+G + TD
Sbjct: 257 QAIEAVEQHGIVFIDEFDKICKRGGQTSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTD 316

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 317 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPSASLTEQYKALMA 376

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +T+ I
Sbjct: 377 TEGVTIEFTDDGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASERNGQTIQI 436

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYVR H+ +  ++ D+  FIL
Sbjct: 437 DAEYVRQHLDELVADEDLSRFIL 459


>gi|259906819|ref|YP_002647175.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia pyrifoliae
           Ep1/96]
 gi|224962441|emb|CAX53896.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           pyrifoliae Ep1/96]
 gi|283476606|emb|CAY72434.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           pyrifoliae DSM 12163]
          Length = 443

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+                S  R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQQQKPR-KLKIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|187930771|ref|YP_001901258.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia
           pickettii 12J]
 gi|309780233|ref|ZP_07674984.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp.
           5_7_47FAA]
 gi|238691781|sp|B2U7X3|HSLU_RALPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|187727661|gb|ACD28826.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii
           12J]
 gi|308920936|gb|EFP66582.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 443

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 18/448 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+RILD L+           +   S  R+ FRKKLR+G++ DKEI++EV   
Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEV--- 177

Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           S+   + DI G    G+ +++E    +   +G G+K + +M V + +  L+ +E+ +L++
Sbjct: 178 SAGAPSMDIMGPP--GMEDMTEQIRSMFAGLGQGKKNRRKMKVSEAFKLLIDEEAAKLVN 235

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D + + ++  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG
Sbjct: 236 EDELKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYG 295

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT T+++L  QY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFRAILTQTDASLTKQY 355

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+KTEG+ L F ED I  LA++A ++N  V +IGARRL TVMER+LED+SF A     
Sbjct: 356 QALLKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 415

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +     D+  ++L
Sbjct: 416 ETVTIDAAYVDERLSELSGNEDLSRYVL 443


>gi|290477229|ref|YP_003470146.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus bovienii SS-2004]
 gi|289176579|emb|CBJ83388.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus bovienii SS-2004]
          Length = 443

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T T    S  R+ FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EELAEERILDVLLPPAKNNWGQTETQSEPSTARQAFRKKLREGQLDDKEIEIDVASAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKTR-KMKIKDAFKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT D I  LA+ A  +N T  +IGARRL TV+ER++EDISF AS+ Q  +V I+
Sbjct: 362 EGMNIDFTTDGIRKLAEAAWRVNETTENIGARRLYTVLERMMEDISFDASERQGHSVEIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV+ H+ +  ++ D+  FIL
Sbjct: 422 ADYVKEHLDELVADEDLSRFIL 443


>gi|37528578|ref|NP_931923.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|62286848|sp|Q7MYC1|HSLU_PHOLL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|36788016|emb|CAE17135.1| ATP-dependent Hsl protease ATP-binding subunit HslU (heat shock
           protein) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 443

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDKAKRAVAIALRNRWRRMQLDETLRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T T    S  R+ FRKKLR+G++ DKEI+I+VA T   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTETQVEPSAARQAFRKKLREGQLDDKEIEIDVATTPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G   K + ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKHKSR-KLKIKDAFKLLIEEEASKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM+T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTKDFERILTEPSASLTEQYKALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+I+ FT+D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+ + ++V ID
Sbjct: 362 EGMIISFTDDGISKIAESAWQVNESTENIGARRLHTVLERLIEDISFEASERRGQSVDID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV+ H+ +  ++ D+  FIL
Sbjct: 422 ADYVKKHLDELVADEDLSRFIL 443


>gi|157828309|ref|YP_001494551.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933015|ref|YP_001649804.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           rickettsii str. Iowa]
 gi|166221604|sp|A8GRL8|HSLU_RICRS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043916|sp|B0BX22|HSLU_RICRO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157800790|gb|ABV76043.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908102|gb|ABY72398.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Rickettsia
           rickettsii str. Iowa]
          Length = 450

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/438 (50%), Positives = 318/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLATLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSRAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|170718714|ref|YP_001783904.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus
           2336]
 gi|189043912|sp|B0US05|HSLU_HAES2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|168826843|gb|ACA32214.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus somnus
           2336]
          Length = 443

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+            +   +NTR++FRKKLR+G++ D+EI+I++A  +  
Sbjct: 124 EEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNIG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE ++  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  + V+ID
Sbjct: 362 EGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVIID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   +GD     D+ HFIL
Sbjct: 422 GDYVTGALGDVVENEDLSHFIL 443


>gi|17544761|ref|NP_518163.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum
           GMI1000]
 gi|21759167|sp|Q8Y3D8|HSLU_RALSO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|17427050|emb|CAD13570.1| probable atp-dependent hsl protease atp-binding subunit hslu
           protein [Ralstonia solanacearum GMI1000]
          Length = 443

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 312/444 (70%), Gaps = 16/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 4   TMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +VR +
Sbjct: 64  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRAK 123

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+R+LD L+           +   SN R+VFRKKLR+G++ DKEI++EVA   + 
Sbjct: 124 AEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA---AG 180

Query: 176 ISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + +
Sbjct: 181 MPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNEEEL 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++VSTKYG I T
Sbjct: 240 KHKAIANVEQNGIVFLDEIDKITSRSEHGGGEVSRQGVQRDLLPLVEGTTVSTKYGMIKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+ LM
Sbjct: 300 DHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQALM 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +TV 
Sbjct: 360 KTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGETVT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   + +     D+  ++L
Sbjct: 420 IDAAYVDSRLNELAGSEDLSRYVL 443


>gi|239908473|ref|YP_002955215.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio
           magneticus RS-1]
 gi|239798340|dbj|BAH77329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio
           magneticus RS-1]
          Length = 457

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/456 (49%), Positives = 313/456 (68%), Gaps = 26/456 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+   LRDE+ PKNI+++GPTGVG
Sbjct: 4   SLTPREIVSELDKYIIGQRDAKRMVAIAMRNRWRRQQIEPVLRDEIAPKNIIMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   + VR +
Sbjct: 64  KTEIARRLARLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRQEELERVRVK 123

Query: 126 ASINAEERILDALVGKTATS-----------------------NTREVFRKKLRDGEISD 162
           A   AEER+LD L+ ++                           TR+  RK  R+G++ D
Sbjct: 124 AEKAAEERLLDLLLPESQRPAHGPIPMPAAIEAPAEPAGEQGLTTRDKLRKLWREGKLDD 183

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + + +EV+  S  +    +PG   +G     +LFSK     RKK   M V++ Y  ++++
Sbjct: 184 RMVPVEVSMPSPQVEIMSMPGMEEMGS-QFKDLFSKAFPQ-RKKTKTMRVREAYEVILQE 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEG 281
           ESDRL+DMD V   + + VE  GI+F+DE DKI  R  G  G  VSREGVQRDLLP+VEG
Sbjct: 242 ESDRLVDMDKVSETARERVEQTGIIFIDEIDKICGRQGGGQGPDVSREGVQRDLLPVVEG 301

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
             V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF  ILT+ 
Sbjct: 302 CVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFHRILTEP 361

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L +QYK L+ TE + L+FT++++  +A  A  +N+   +IGARRL T+ME++L D+S
Sbjct: 362 QNALTVQYKALLATENVTLEFTDEALREVAQFAQRINADTENIGARRLYTIMEKILSDLS 421

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+ASD   +TVV+D  YVR  + D   + D+  +IL
Sbjct: 422 FAASDQGGQTVVVDPAYVREKLADVAEDRDLSRYIL 457


>gi|87122852|ref|ZP_01078722.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121]
 gi|86161863|gb|EAQ63158.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121]
          Length = 439

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/438 (52%), Positives = 312/438 (71%), Gaps = 9/438 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP  +R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPRETVNALDEHIIGQQSAKRAVAIALRNRWRRMQLPEAMRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE   + ++ +A
Sbjct: 64  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQASERLQNKA 123

Query: 127 SINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  AE+RILDAL      V  T  S+TR+VFRKKLR+G++ DKEIDI++A  ++++    
Sbjct: 124 ADAAEDRILDALLPPARGVEPTEDSSTRQVFRKKLREGQLDDKEIDIDLAAQAANVEIMT 183

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            PG   +    L  +FS   G  +  K ++ V+    ++  +E+ +LI+ D +   +++ 
Sbjct: 184 PPGMEEM-TSQLQNMFSN-FGGEKTTKRKLKVKDALRQVRDEEAAKLINEDELKAQAVEA 241

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GIVFLDE DK+      +   VSREGVQRDLLPLVEG +VSTKYG I TDHILFIA
Sbjct: 242 VEQNGIVFLDEIDKVAKSSERSSGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILFIA 301

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+S+P+DL+PE+QGR P+RV L +L   DF+ IL +  ++L  QY  L  TEG+ L
Sbjct: 302 SGAFHLSKPSDLIPELQGRLPIRVELNALTVEDFKRILVEPNASLTKQYVALAATEGVTL 361

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +FTE+ I  LA+VA  +N T  +IGARRL T++ER+LE++S+SASD+ + + V I AEYV
Sbjct: 362 NFTEEGIHRLAEVAFKVNETTENIGARRLHTMLERLLEEVSYSASDMPDGQEVNITAEYV 421

Query: 420 RLHIGDFPSETDMYHFIL 437
              +G+   + D+  +IL
Sbjct: 422 DDQLGEVVEDEDLSRYIL 439


>gi|152978034|ref|YP_001343663.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           succinogenes 130Z]
 gi|171472945|sp|A6VL81|HSLU_ACTSZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150839757|gb|ABR73728.1| heat shock protein HslVU, ATPase subunit HslU [Actinobacillus
           succinogenes 130Z]
          Length = 441

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/444 (52%), Positives = 309/444 (69%), Gaps = 17/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPREIVSELDAYIIGQSEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVG+ V+ IIRDL D+A+  +R+   ++ R +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGKEVDTIIRDLTDMAVKQIRKIEVEKNRMK 122

Query: 126 ASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+ +             S TR+VFRKKLR+G + D EI++   D SS 
Sbjct: 123 AQDAAEERILDILLPRAKNKWGETEYEKDSATRQVFRKKLREGALDDSEIEV---DISSQ 179

Query: 176 ISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + N +I  P G       L  LF  +  S  KK+ RM V+     L+ DE+ +L++ + +
Sbjct: 180 M-NVEIMTPPGMEEMTSQLQSLFEGLSPSHSKKR-RMKVKDAMKVLIDDEAAKLVNNEDL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + +I+ VE  GIVF+DE DKI  +    G  VSREGVQRDLLP++EGS+V+TK+G + T
Sbjct: 238 KQKAIESVEQNGIVFIDEIDKICKQSDRGGADVSREGVQRDLLPIIEGSTVNTKHGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQYKELM
Sbjct: 298 DHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPSASLTLQYKELM 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ ++FT D I  +A+ A ++N    +IGARRL TV+ER+++ ISF AS+   ++VV
Sbjct: 358 KTEGVTVEFTPDGISKIAEAAFHVNEKTENIGARRLHTVLERLMDGISFDASERSGESVV 417

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID +YV   + D     D+  FIL
Sbjct: 418 IDEKYVSEVLNDVVDNEDLSRFIL 441


>gi|83748663|ref|ZP_00945681.1| heat shock protein chaperone; cpX superfamily [Ralstonia
           solanacearum UW551]
 gi|207727528|ref|YP_002255922.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum MolK2]
 gi|207741920|ref|YP_002258312.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum IPO1609]
 gi|83724707|gb|EAP71867.1| heat shock protein chaperone; cpX superfamily [Ralstonia
           solanacearum UW551]
 gi|206590765|emb|CAQ56377.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum MolK2]
 gi|206593306|emb|CAQ60233.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum IPO1609]
          Length = 444

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            + +   DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ 
Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + +   +I  VE  GIVFLDE DKI +R + G G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY
Sbjct: 297 MIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     
Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +     D+  ++L
Sbjct: 417 ETVTIDAAYVDSRLNELAGSEDLSRYVL 444


>gi|254516116|ref|ZP_05128176.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR5-3]
 gi|219675838|gb|EED32204.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR5-3]
          Length = 442

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/444 (52%), Positives = 309/444 (69%), Gaps = 16/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEEGLRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++++ ++RE   D++R +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMSVKMLREQAMDKMRFR 122

Query: 126 ASINAEERILDALVGKT------ATSN---TREVFRKKLRDGEISDKEIDIEV-ADTSSD 175
           A   AEERILD L+         ATS    TR++ RKKLR+GE+ DKEID+E+ A ++ +
Sbjct: 123 AEEAAEERILDVLLPGARDTKGDATSQGDGTRQLLRKKLREGELDDKEIDLELTAPSNVE 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           IS    P G       L  +FS  M   + K  R+ ++  +  L  +E+ +L++ D + +
Sbjct: 183 IS---APPGMEEMTSQLQSMFSN-MARTQSKTRRLPIKAAFAALCDEEAAKLVNEDDIKQ 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +++   E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG +VSTKYG + TDH
Sbjct: 239 NALHAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+  DFR IL + ++ L  QY  L+ T
Sbjct: 299 ILFIASGAFHLSKPSDLIPELQGRMPIRVELAALSPEDFRRILVEPDTALTRQYSALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVV 413
           EG+ L+FTED I  +A++A  LN    +IGARRL TVMER+LED SF A+D  L    + 
Sbjct: 359 EGMTLEFTEDGIARIAELAWQLNENTENIGARRLHTVMERLLEDASFRAADDGLNASVLA 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA YV   + D   + D+  FIL
Sbjct: 419 VDAAYVDSQLSDLAMDEDLSRFIL 442


>gi|302035682|ref|YP_003796004.1| heat shock protein hslVU, ATPase subunit [Candidatus Nitrospira
           defluvii]
 gi|300603746|emb|CBK40078.1| Heat shock protein HslVU, ATPase subunit [Candidatus Nitrospira
           defluvii]
          Length = 467

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/455 (50%), Positives = 312/455 (68%), Gaps = 24/455 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV  LDRY+IGQ DAKR VAIALRNRWRRQQL  +LRDE+MPKNI+++GPTGVG
Sbjct: 14  SLTPRQIVEALDRYVIGQHDAKRMVAIALRNRWRRQQLAPELRDEVMPKNIIMIGPTGVG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE IIRDL ++AI++V+    +EV+ +
Sbjct: 74  KTEIARRLAKLAEAPFIKVEASKFTEVGYVGRDVESIIRDLTELAISLVKTKHLEEVQGK 133

Query: 126 ASINAEERILDALV----------------GKTATSN-------TREVFRKKLRDGEISD 162
           AS + EER+LD L+                 +T  S        TR   R +LR+G++  
Sbjct: 134 ASRHGEERLLDLLLPGAPSRPTSPGFEPSGARTDASEQIESADATRSKLRLQLREGKLDQ 193

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +++EV + +  +      GG      NL ++    M  G+KKK  M V      L ++
Sbjct: 194 RSVEVEVKERALPLGVISNAGGMEDLEGNLRDMLGG-MFQGKKKKRMMKVPDALKHLTQE 252

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ +LIDMD V R++I  VE  GIVFLDE DKI  R+   G  VSREGVQRDLLP+VEGS
Sbjct: 253 EAQKLIDMDEVVREAITKVEQTGIVFLDEIDKIAGRERAMGPDVSREGVQRDLLPIVEGS 312

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +VSTK+G++ TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L  L K DF  ILT+  
Sbjct: 313 TVSTKHGAVQTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELAPLTKDDFVRILTEPR 372

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             L+ QY+ LM TEG+ ++F +D +  +A  AV +N    +IGARRL T+MER+LE +SF
Sbjct: 373 GALVRQYQALMATEGLTVEFADDGLAEIAATAVQVNERTENIGARRLFTIMERLLEQVSF 432

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             S+++EKT+V+DA YVR  + +   + D+  +IL
Sbjct: 433 EGSEMKEKTIVVDAGYVRERLQNIVKDQDLSRYIL 467


>gi|269140778|ref|YP_003297479.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|267986439|gb|ACY86268.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|304560538|gb|ADM43202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Edwardsiella
           tarda FL6-60]
          Length = 443

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+       G+T  +N     R+ FRKKLR+GE+ DKEI+IE+A +   
Sbjct: 124 EEMAEERILDALIPPAKNNWGQTEQANESSPARQTFRKKLREGELDDKEIEIELAASPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 QAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F+ D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + ID
Sbjct: 362 EGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGAAIAID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|77456624|ref|YP_346129.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens Pf0-1]
 gi|123758526|sp|Q3KJB6|HSLU_PSEPF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77380627|gb|ABA72140.1| ATP-dependent hsl protease ATP-binding subunit hslu [Pseudomonas
           fluorescens Pf0-1]
          Length = 445

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/448 (52%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMLREQEMTRVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+             T  SNTR++FRK+LR+G++ DKEI+IEVA+ +
Sbjct: 121 RAEDAAEDRILDALLPPARMGFSNEEAPTQDSNTRQLFRKRLREGQLDDKEIEIEVAEMA 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                   P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + +
Sbjct: 181 G--IEIATPPGMEEMTNQLQNLFAN-MGKGKKKARKLKVKEALKLVRDEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY  L+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYCALL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----E 409
           KTEG+ + F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     +
Sbjct: 358 KTEGLNIQFQPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHDD 417

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           K + IDAEYV  H+G+     D+  +IL
Sbjct: 418 KAIQIDAEYVNSHLGELAQNEDLSRYIL 445


>gi|238921643|ref|YP_002935158.1| ATP-dependent protease HslVU, ATPase subunit, [Edwardsiella
           ictaluri 93-146]
 gi|259491372|sp|C5BB81|HSLU_EDWI9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238871212|gb|ACR70923.1| ATP-dependent protease HslVU, ATPase subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 443

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+       G+T  +N     R+ FRKKLR+GE+ DKEI+IE+A +   
Sbjct: 124 EEMAEERILDALIPPAKNNWGQTEQTNESSPARQTFRKKLREGELDDKEIEIELAASPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 QAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F+ D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + ID
Sbjct: 362 EGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGTAIAID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|157147271|ref|YP_001454590.1| ATP-dependent protease ATP-binding subunit HslU [Citrobacter koseri
           ATCC BAA-895]
 gi|166221475|sp|A8AKZ1|HSLU_CITK8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157084476|gb|ABV14154.1| hypothetical protein CKO_03063 [Citrobacter koseri ATCC BAA-895]
          Length = 443

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQSIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EEMAEERILDALIPPAKNNWGQAEQQQEPSAARQAFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELKALTTEDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ ID
Sbjct: 362 EGVDIEFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|50123182|ref|YP_052349.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium
           atrosepticum SCRI1043]
 gi|62286796|sp|Q6CZ91|HSLU_ERWCT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49613708|emb|CAG77159.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Pectobacterium atrosepticum SCRI1043]
          Length = 443

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+           G    S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  ++K  ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQ-KQKAHKVKIKDAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V+ID
Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVIID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443


>gi|157825563|ref|YP_001493283.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia akari
           str. Hartford]
 gi|166221602|sp|A8GN00|HSLU_RICAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157799521|gb|ABV74775.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str.
           Hartford]
          Length = 450

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTYSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREQAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +G  + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDVIGRALGGSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVY 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           + FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ + + ID ++V
Sbjct: 373 IAFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGRKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|113866231|ref|YP_724720.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia eutropha
           H16]
 gi|123134530|sp|Q0KF69|HSLU_RALEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113525007|emb|CAJ91352.1| ATP-dependent protease HslVU, ATP-binding subunit [Ralstonia
           eutropha H16]
          Length = 443

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 318/448 (70%), Gaps = 18/448 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SNTR+VFRKKLR+G + DKEI++E+   
Sbjct: 121 RTKAEDAAEDRLLDVLLPPARDIGFSQPEEKDSNTRQVFRKKLREGSLDDKEIELEL--- 177

Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           S+ + + DI G    G+ +++E    +   +G G+K + +M V++ +  L+ +E+ +L++
Sbjct: 178 SAGMPSMDIMGPP--GMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVN 235

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + +   +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 236 DEELKHKAIANVEQNGIVFLDEIDKIASRSEIGGGEVSRQGVQRDLLPLVEGTTVSTKYG 295

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  ILT T+++L  QY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTDASLTKQY 355

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A+    
Sbjct: 356 QALLSTESVDLVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSG 415

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV I+A YV   +GD     D+  ++L
Sbjct: 416 ETVTINAAYVDERLGDLAVNEDLSRYVL 443


>gi|300705554|ref|YP_003747157.1| ATPase of the hsluv protease, molecular chaperone [Ralstonia
           solanacearum CFBP2957]
 gi|299073218|emb|CBJ44576.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum CFBP2957]
          Length = 445

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/449 (51%), Positives = 315/449 (70%), Gaps = 18/449 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            + +   DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ 
Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + +   +I  VE  GIVFLDE DKI +R    G G  VSR+GVQRDLLPLVEG++VSTKY
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGGEVSRQGVQRDLLPLVEGTTVSTKY 296

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  Q
Sbjct: 297 GMIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVGDFQAILTQTDASLTKQ 356

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A    
Sbjct: 357 YQALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSS 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +TV IDA YV   + +     D+  ++L
Sbjct: 417 GETVTIDAAYVDSRLNELAGSEDLSRYVL 445


>gi|120609505|ref|YP_969183.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax
           citrulli AAC00-1]
 gi|166221454|sp|A1TKC1|HSLU_ACIAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120587969|gb|ABM31409.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax citrulli
           AAC00-1]
          Length = 438

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/438 (51%), Positives = 307/438 (70%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPALRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122

Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILD L+       + A S  R+VFRKKLR+G++ DKEI+I+VAD    +   
Sbjct: 123 AEDAAEDRILDVLIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDVADARPQLEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L  +FS+ MG  R+K  ++ + +    L  +E+ +L++ + V   ++Q
Sbjct: 183 G-PQGMEEMAEQLRGMFSQ-MGHERRKARKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI
Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ TEG+ 
Sbjct: 301 TSGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F  + I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV +DA YV
Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRVDAAYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +       D+  +IL
Sbjct: 421 DGRLASLSQNEDLSRYIL 438


>gi|88799638|ref|ZP_01115214.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297]
 gi|88777723|gb|EAR08922.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297]
          Length = 440

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/439 (52%), Positives = 312/439 (71%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AKR+VAIALRNRWRR Q+   +RDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDKHIIGQDEAKRSVAIALRNRWRRMQVEEQMRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDL +  I + RE     VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLAETGIKLFREQEMHAVRPRA 123

Query: 127 SINAEERILDALV----GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              AE+RILD L+    G+  T N    TR++FRKKLR GE+ DKEI++++A+TS  +  
Sbjct: 124 EDAAEDRILDILLPQARGEDNTDNQDSSTRQIFRKKLRQGELDDKEIEVDIAETSVGVEI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  MG  +KK  ++ +++    L  +E+  +I+ D + + +I
Sbjct: 184 MAPPGMEEM-TSQLQNMFSN-MGGQKKKTRKLKIKEALKALTDEEAAHMINEDELKQRAI 241

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           Q VE  GIVF+DE DKI   D+  G  VSREGVQRDLLPL+EGS+++TKYG I TDHILF
Sbjct: 242 QAVEQNGIVFIDEIDKIAKNDNRGGGDVSREGVQRDLLPLIEGSTINTKYGMIKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFH S+P+DL+PE+QGR P+RV+L +L   DF+ ILT+   ++  QYK LM++E +
Sbjct: 302 IGSGAFHFSKPSDLIPELQGRLPIRVNLNALTPDDFKRILTEPNHSITEQYKALMRSEDL 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            + FTED+IDALA  A  +N +  +IGARRL T+MER+ E+IS++AS+   +T VIDA+Y
Sbjct: 362 DVTFTEDAIDALAKTAYQVNESTENIGARRLHTIMERLFENISYTASERSGETQVIDAQY 421

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +G+     D+  FIL
Sbjct: 422 VQDTLGELAQNEDLSRFIL 440


>gi|315633393|ref|ZP_07888684.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393]
 gi|315477893|gb|EFU68634.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393]
          Length = 443

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIVKNRAKA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            + + SNTR++FRKKLR+G++ DKE++I+VA  S  
Sbjct: 124 EEAAEERILDALLPAAKNQWGEVENRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVSMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + GS  KK+ +M ++     L+ DE+ +L++ + + +
Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFENLSGSQTKKR-KMKIKDALKTLIDDEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV ID
Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 422 AAYVTEALGEVIENEDLSRFIL 443


>gi|303248943|ref|ZP_07335190.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           fructosovorans JJ]
 gi|302489666|gb|EFL49602.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           fructosovorans JJ]
          Length = 461

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/460 (49%), Positives = 319/460 (69%), Gaps = 30/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+  +LRDE+ PKNI+++GPTGVG
Sbjct: 4   SLTPREIVSELDKYIIGQKDAKRMVAIAMRNRWRRQQIEPNLRDEIAPKNIIMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   D V  +
Sbjct: 64  KTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRVAAK 123

Query: 126 ASINAEERILDALVGKT--------------------------ATSNTREVFRKKLRDGE 159
           A   AEER+LD L+ ++                          A ++TRE  RK  R+G+
Sbjct: 124 AEKAAEERLLDLLLPESQRGGENPIPMPAALEAPAMAATPSEPAGASTREKLRKLWREGK 183

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+ + +EV+  S  +    +PG   +G +   ++FSKV    RKK   M V+  Y  L
Sbjct: 184 LDDRIVPVEVSVASPQVEIMSMPGMEDMG-MQFKDMFSKVFPQ-RKKTRNMRVRDAYEVL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLP 277
           +++ESDRL+DMD V   + + VE  GI+F+DE DKI  + +G G G  VSREGVQRDLLP
Sbjct: 242 LQEESDRLVDMDKVAEAAKERVEQTGIIFIDELDKICGKQAGGGSGPDVSREGVQRDLLP 301

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG  V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF  I
Sbjct: 302 VVEGCVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFYRI 361

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L +QYK L+ TEG+ LDFT++++  +A+ A  +N    +IGARRL T+ME++L
Sbjct: 362 LTEPKNALTVQYKALIGTEGVTLDFTDEALREVAEFAQRINEETENIGARRLYTIMEKIL 421

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D+SF+ASD   +TVV+D  YVR  + D     D+  +IL
Sbjct: 422 SDLSFAASDQNGQTVVVDPAYVRDKLVDVAENRDLSRYIL 461


>gi|170769640|ref|ZP_02904093.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii
           TW07627]
 gi|170121448|gb|EDS90379.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii
           TW07627]
          Length = 443

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T+ ID
Sbjct: 362 EGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|261343009|ref|ZP_05970867.1| hypothetical protein ENTCAN_09612 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314761|gb|EFC53699.1| ATP-dependent protease HslVU, ATPase subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 443

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+GE+ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGELDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I+
Sbjct: 362 EGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGESITIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVGKHLDALVADEDLSRFIL 443


>gi|113461678|ref|YP_719747.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus
           129PT]
 gi|123132272|sp|Q0I5E0|HSLU_HAES1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|112823721|gb|ABI25810.1| ATP-dependent ClpY-related protease [Haemophilus somnus 129PT]
          Length = 443

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+            +   +NTR++FRKKLR+G++ D+EI+I++A  +  
Sbjct: 124 EEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNIG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE ++  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  + V+I+
Sbjct: 362 EGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVIIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   +GD     D+ HFIL
Sbjct: 422 GDYVTGALGDVVENEDLSHFIL 443


>gi|160896907|ref|YP_001562489.1| ATP-dependent protease ATP-binding subunit HslU [Delftia
           acidovorans SPH-1]
 gi|160362491|gb|ABX34104.1| heat shock protein HslVU, ATPase subunit HslU [Delftia acidovorans
           SPH-1]
          Length = 445

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/441 (51%), Positives = 311/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQ +   LR E+ PKNIL++GPT
Sbjct: 7   MSSAMTPQEIVSELDRHIVGQAGAKRAVAIALRNRWRRQNVADGLRQEITPKNILMIGPT 66

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+   RE+   ++
Sbjct: 67  GVGKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTREADMKKL 126

Query: 123 REQASINAEERILDALV-----GKTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AE+RILD LV     G+ A  NT R+VFRKKLR+G++ DKEI+I+VAD    +
Sbjct: 127 RLRAEDAAEDRILDVLVPQARSGEVAADNTARQVFRKKLREGQLDDKEIEIDVADAPPQV 186

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  MG  ++K  ++ + +    L  +E+ +L++ + V   
Sbjct: 187 QIMG-PQGMEEMAEQLRGMFSH-MGQEKRKTRKLRIAEAMKLLTDEEAAKLVNEEDVRTR 244

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I   E  GIVF+DE DK+  R   +G  +SR+GVQRDLLPLVEG+SVSTKYG + TDHI
Sbjct: 245 AIANAEQNGIVFIDEIDKVATRQETSGSDISRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 304

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TE
Sbjct: 305 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTHASLVKQYQALLATE 364

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+FT + I  LA +A ++N    +IGARRL TV+ER+L+++SF A++L  +T+ IDA
Sbjct: 365 GVTLEFTPEGITRLAGIAFDVNERTENIGARRLSTVLERLLDEVSFDAANLSGQTISIDA 424

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  FIL
Sbjct: 425 AYVDQRLQSLSQDEDLSRFIL 445


>gi|300692949|ref|YP_003753944.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum PSI07]
 gi|299080009|emb|CBJ52684.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum PSI07]
          Length = 444

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SN R+VFRKKLR+G++ DKEI++E+A  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFSQPEERDSNARQVFRKKLREGQLDDKEIELEIA-- 178

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            + +   DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ 
Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + +   +I  VE  GIVFLDE DKI +R + G G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY
Sbjct: 297 MIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFKAILTQTDASLTKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     
Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +     D+  ++L
Sbjct: 417 ETVTIDAAYVDNRLNELAGSEDLSRYVL 444


>gi|190575906|ref|YP_001973751.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas
           maltophilia K279a]
 gi|190013828|emb|CAQ47466.1| putative ATP-dependent Hsl protease ATP-binding subunit (heat shock
           protein) [Stenotrophomonas maltophilia K279a]
          Length = 457

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/451 (50%), Positives = 319/451 (70%), Gaps = 22/451 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVG
Sbjct: 10  TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR Q
Sbjct: 70  KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129

Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168
           A   AE+RILDAL+ +                +A  N TR  FRK LR+GE+ ++EI+++
Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDEREIELD 189

Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +A + S DI     PG   +G   L  +F+ + G  +  K  ++++   P L+ +E+ +L
Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKL 246

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++ D +   +I+  E +GIVF+DE DK+  R D+  G  VSREGVQRDLLPLVEGS+VST
Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVST 306

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++ L 
Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALT 366

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ + FT D+I+ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 367 KQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +++ ID+ YV  H+G+   + D+  +IL
Sbjct: 427 RDGESLAIDSAYVDKHLGELVQDPDLSRYIL 457


>gi|33152977|ref|NP_874330.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi
           35000HP]
 gi|33149202|gb|AAP96719.1| ATP-dependent hsl protease ATP-binding subunit HslU [Haemophilus
           ducreyi 35000HP]
          Length = 448

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/445 (50%), Positives = 312/445 (70%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGV
Sbjct: 9   MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 68

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E   ++ R 
Sbjct: 69  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 128

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V +T  ++TR++FRKKLR+G + DKEIDI+VA    
Sbjct: 129 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQV- 187

Query: 175 DISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              N +I  P G       L  LF   M   + +K +M ++     ++ +E+ +L++ + 
Sbjct: 188 ---NVEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEE 243

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TKYG + 
Sbjct: 244 LKQQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVK 303

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF  ILT+  ++L LQY+EL
Sbjct: 304 TDHILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYREL 363

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF A++   + +
Sbjct: 364 MKTEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHI 423

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           VID +YV   + D     D+  FIL
Sbjct: 424 VIDEKYVATALNDVVENEDLSRFIL 448


>gi|307128948|ref|YP_003880964.1| molecular chaperone and ATPase of HslUV protease [Dickeya dadantii
           3937]
 gi|306526477|gb|ADM96407.1| molecular chaperone and ATPase component of HslUV protease [Dickeya
           dadantii 3937]
          Length = 443

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSMEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G + DKEI+IE+A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGSLDDKEIEIELAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKNR-KIKIREAFKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++ED+S+ AS++  +TV ID
Sbjct: 362 EGVNITFLPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMHGQTVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443


>gi|53803703|ref|YP_114447.1| ATP-dependent protease ATP-binding subunit HslU [Methylococcus
           capsulatus str. Bath]
 gi|62286765|sp|Q606K1|HSLU_METCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|53757464|gb|AAU91755.1| heat shock protein HslVU, ATPase subunit HslU [Methylococcus
           capsulatus str. Bath]
          Length = 440

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/440 (51%), Positives = 305/440 (69%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+ A LRDE+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELDKHIVGQAEAKRAVAIALRNRWRRAQVGAPLRDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++R++   +V+ +
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLTDAAIKMIRQTETAKVQSR 122

Query: 126 ASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEER+LDALV   +T N         R+ FR+KLR GE++DKEI+I+V+     + 
Sbjct: 123 AEAAAEERVLDALVPHASTWNAGEEGDSPARQKFRQKLRAGELNDKEIEIDVSAAPIGVE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF     +GR +  ++ V+     L  +E+ ++I+ + +   +
Sbjct: 183 IMAPPGLEEMSS-QLQNLFQNFQ-AGRTRTRKLRVRDALKLLKEEEAGKMINEEEIKLRA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +  VE  GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG +VSTKYG+I TDHIL
Sbjct: 241 VHAVEQNGIVFLDELDKICKRADYGGPDVSREGVQRDLLPLVEGCTVSTKYGTIRTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGRFP+RV L  L+  DF  ILT+ +++L  QY  L+ TEG
Sbjct: 301 FIASGAFHLAKPSDLIPELQGRFPIRVELNPLSADDFVRILTEPDASLTAQYAALLATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+F + +I  +A ++  +N    +IGARRL TV+ER+LE+ISF A+D    ++ IDA 
Sbjct: 361 VNLEFADSAIRRIAQISWEVNERTENIGARRLHTVLERLLEEISFDAADRSGTSITIDAG 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+G    + D+  +IL
Sbjct: 421 YVDAHLGSLALDEDLSRYIL 440


>gi|308051235|ref|YP_003914801.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica
           DSM 9799]
 gi|307633425|gb|ADN77727.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica
           DSM 9799]
          Length = 442

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/441 (51%), Positives = 302/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQSGAKKAVAIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE      + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREQEMARNKFRA 123

Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEER+LDAL+           K   + TR+VFRKKLR+G++ DKEI+++V+     +
Sbjct: 124 EEAAEERVLDALLPNPKDQWGNEQKADNTATRQVFRKKLREGQLDDKEIEVDVSQAQMGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   +G  +K + +M V+  +  L+ +E+ +L+  + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQSMFQN-LGGQQKDRRKMKVKDAFKLLVEEEAAKLVKPEELKEK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 242 AIEAVEQHGIVFLDEIDKICKRGEVSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L SL   DF  ILT+  ++L  QYK LM TE
Sbjct: 302 LFIASGAFQLSKPSDLIPELQGRLPIRVELDSLTAEDFVRILTEPHASLTEQYKALMGTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FTED I  +A+ A  +N    +IGARRL TVMER++E+ISF ASD   +++ +DA
Sbjct: 362 GVDVSFTEDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEEISFDASDKSGQSLTVDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+     + D+  FIL
Sbjct: 422 AYVNAHLDTLVEDEDLARFIL 442


>gi|62286859|sp|Q7VKB3|HSLU_HAEDU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 440

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/445 (50%), Positives = 312/445 (70%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGV
Sbjct: 1   MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E   ++ R 
Sbjct: 61  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V +T  ++TR++FRKKLR+G + DKEIDI+VA    
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQV- 179

Query: 175 DISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              N +I  P G       L  LF   M   + +K +M ++     ++ +E+ +L++ + 
Sbjct: 180 ---NVEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEE 235

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TKYG + 
Sbjct: 236 LKQQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF  ILT+  ++L LQY+EL
Sbjct: 296 TDHILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYREL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF A++   + +
Sbjct: 356 MKTEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHI 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           VID +YV   + D     D+  FIL
Sbjct: 416 VIDEKYVATALNDVVENEDLSRFIL 440


>gi|317494767|ref|ZP_07953179.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917369|gb|EFV38716.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 443

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMVRMQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI++E+A +   
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIELELAASPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKARKIKIKEAFKLLIEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +VSTK+G + TDH
Sbjct: 242 QAINAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A+ A  +N +  +IGARRL T++ER++E+ISF ASD+  +TV ID
Sbjct: 362 EGLTINFTADGVRHIAEAAWRVNESAENIGARRLHTILERLVEEISFEASDMSGQTVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYVR H+ +  ++ D+  FIL
Sbjct: 422 AEYVRNHLDELVADEDLSRFIL 443


>gi|237728044|ref|ZP_04558525.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter
           sp. 30_2]
 gi|226910301|gb|EEH96219.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter
           sp. 30_2]
          Length = 443

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|212219520|ref|YP_002306307.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           CbuK_Q154]
 gi|212013782|gb|ACJ21162.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 465

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEG
Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|161505410|ref|YP_001572522.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189043917|sp|A9MI34|HSLU_SALAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|160866757|gb|ABX23380.1| hypothetical protein SARI_03565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 443

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD LV       G+T      S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLVPPAKNNWGQTEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSLFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|299068385|emb|CBJ39609.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum CMR15]
          Length = 444

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L+           +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RVKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178

Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            + +   DI  P G       +  +F+  +G G+K + +M V + +  L+ +E+ +L++ 
Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + +   +I  VE  GIVFLDE DKI +R + G G  VSR+GVQRDLLPLVEG++VSTKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEHGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAF +++P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY
Sbjct: 297 MIKTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     
Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +     D+  ++L
Sbjct: 417 ETVTIDATYVDSRLNELAGSEDLSRYVL 444


>gi|146313674|ref|YP_001178748.1| ATP-dependent protease ATP-binding subunit HslU [Enterobacter sp.
           638]
 gi|167017227|sp|A4WG67|HSLU_ENT38 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145320550|gb|ABP62697.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter sp.
           638]
          Length = 443

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAMKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQNEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   NG  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESNGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTDDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ ID
Sbjct: 362 EGVTIEFTADGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYEASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|120553750|ref|YP_958101.1| ATP-dependent protease ATP-binding subunit HslU [Marinobacter
           aquaeolei VT8]
 gi|226704528|sp|A1TYU5|HSLU_MARAV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120323599|gb|ABM17914.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           aquaeolei VT8]
          Length = 443

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE        +A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREQEMKRHEHRA 123

Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+              A S+TR++FRKKLR+GE+ DKEI+I++  + + 
Sbjct: 124 LDAAEDRILDALLPPPRDFNEDSQRTNADSSTRQLFRKKLREGELDDKEIEIDLRSSGAG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +FS  + S ++K  +M V      +  +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFSN-LSSDKRKTRKMKVADAMKRVKDEEAAKLVNEEEIKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGSI TDH
Sbjct: 242 KAIQAVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L+ QY+ LM T
Sbjct: 302 ILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDASLVQQYEALMGT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F +D+I  +A+VA  +N T  +IGARRL TV+ER+LE +S+ A D    T  + 
Sbjct: 362 EGVKLTFADDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYDAGDQVTDTFEVT 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV   +G+   + D+  +IL
Sbjct: 422 ADYVDEKLGELSEDEDLSRYIL 443


>gi|153206869|ref|ZP_01945687.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           'MSU Goat Q177']
 gi|161830731|ref|YP_001595964.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           RSA 331]
 gi|165918253|ref|ZP_02218339.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 334]
 gi|62286877|sp|Q83A94|HSLU_COXBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043908|sp|A9N9F8|HSLU_COXBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120576942|gb|EAX33566.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           'MSU Goat Q177']
 gi|161762598|gb|ABX78240.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 331]
 gi|165918113|gb|EDR36717.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 334]
          Length = 447

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 61  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+GE+ DKEI++
Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 181 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 231

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEG
Sbjct: 232 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 291

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 292 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 351

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 352 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 411

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 412 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 447


>gi|215919320|ref|NP_820987.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           RSA 493]
 gi|206584205|gb|AAO91501.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii RSA 493]
          Length = 465

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEG
Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|283834705|ref|ZP_06354446.1| hypothetical protein CIT292_08923 [Citrobacter youngae ATCC 29220]
 gi|291069631|gb|EFE07740.1| ATP-dependent protease HslVU, ATPase subunit [Citrobacter youngae
           ATCC 29220]
          Length = 443

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTGDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  + + ID
Sbjct: 362 EGVNIDFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|157155037|ref|YP_001465425.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           E24377A]
 gi|191166396|ref|ZP_03028227.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B7A]
 gi|193063956|ref|ZP_03045042.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E22]
 gi|194427514|ref|ZP_03060063.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B171]
 gi|209921411|ref|YP_002295495.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           SE11]
 gi|218556493|ref|YP_002389407.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           IAI1]
 gi|218697645|ref|YP_002405312.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           55989]
 gi|260846649|ref|YP_003224427.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O103:H2 str. 12009]
 gi|293470244|ref|ZP_06664655.1| heat shock protein HslVU [Escherichia coli B088]
 gi|300819903|ref|ZP_07100087.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           107-1]
 gi|300825078|ref|ZP_07105173.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           119-7]
 gi|300921947|ref|ZP_07138096.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           182-1]
 gi|301328291|ref|ZP_07221407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           78-1]
 gi|307315162|ref|ZP_07594743.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W]
 gi|309796644|ref|ZP_07691050.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           145-7]
 gi|331670784|ref|ZP_08371620.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA271]
 gi|331680048|ref|ZP_08380710.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H591]
 gi|167017225|sp|A7ZUE6|HSLU_ECO24 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704524|sp|B7M6Y2|HSLU_ECO8A RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238065795|sp|B6I4S4|HSLU_ECOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802306|sp|B7LA28|HSLU_ECO55 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|157077067|gb|ABV16775.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E24377A]
 gi|190903496|gb|EDV63214.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B7A]
 gi|192929421|gb|EDV83029.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E22]
 gi|194414554|gb|EDX30827.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B171]
 gi|209914670|dbj|BAG79744.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE11]
 gi|218354377|emb|CAV01135.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli 55989]
 gi|218363262|emb|CAR00907.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli IAI1]
 gi|257761796|dbj|BAI33293.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O103:H2 str. 12009]
 gi|291321454|gb|EFE60893.1| heat shock protein HslVU [Escherichia coli B088]
 gi|300421671|gb|EFK04982.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           182-1]
 gi|300522430|gb|EFK43499.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           119-7]
 gi|300527543|gb|EFK48605.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           107-1]
 gi|300845253|gb|EFK73013.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           78-1]
 gi|306905421|gb|EFN35957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W]
 gi|308119800|gb|EFO57062.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           145-7]
 gi|315063262|gb|ADT77589.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli W]
 gi|320198862|gb|EFW73460.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli EC4100B]
 gi|323161167|gb|EFZ47084.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E128010]
 gi|323182344|gb|EFZ67753.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1357]
 gi|323380673|gb|ADX52941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           KO11]
 gi|323943669|gb|EGB39775.1| heat shock protein HslVU [Escherichia coli H120]
 gi|324020556|gb|EGB89775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           117-3]
 gi|324115667|gb|EGC09603.1| heat shock protein HslVU [Escherichia coli E1167]
 gi|331062039|gb|EGI33962.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA271]
 gi|331072374|gb|EGI43707.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H591]
          Length = 443

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 313/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T++ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTIIID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|218551085|ref|YP_002384876.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia
           fergusonii ATCC 35469]
 gi|226704527|sp|B7LUS3|HSLU_ESCF3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|218358626|emb|CAQ91276.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia fergusonii ATCC 35469]
 gi|324111448|gb|EGC05429.1| heat shock protein HslVU [Escherichia fergusonii B253]
 gi|325499331|gb|EGC97190.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia
           fergusonii ECD227]
          Length = 443

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|260913429|ref|ZP_05919908.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325]
 gi|260632503|gb|EEX50675.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325]
          Length = 443

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ I+RDL D A+ +VR++  ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIVRDLTDSAMKLVRQTEIEKNRFRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+                S+TR+VFRKKLR+G++ DKEI+++VA  S  
Sbjct: 124 EEAAEDRILDALLPPAKNQWGQVEASDNNSSTRQVFRKKLREGQLDDKEIEVDVAGVSMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEG++VSTK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FTE +I  +A+ A  +N    +IGARRL TVMER+++ ISF+AS++  + V ID
Sbjct: 362 EGVNIAFTEGAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASEMNGQIVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +GD     D+  FIL
Sbjct: 422 DAYVIEALGDVVENEDLSRFIL 443


>gi|283787388|ref|YP_003367253.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Citrobacter rodentium ICC168]
 gi|282950842|emb|CBG90519.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Citrobacter rodentium ICC168]
          Length = 443

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            ++  S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQSEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|294638265|ref|ZP_06716518.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda
           ATCC 23685]
 gi|291088518|gb|EFE21079.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda
           ATCC 23685]
          Length = 443

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+   SN     R+ FRKKLR+GE+ DKEI+IE+A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSNENSPARQSFRKKLREGELDDKEIEIELAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKIKIKDAFKQLIEEEAAKLVNPEELKH 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 QAIEAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + ID
Sbjct: 362 EGVNITFTADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMNGTAITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|51473515|ref|YP_067272.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str.
           Wilmington]
 gi|62286790|sp|Q68X52|HSLU_RICTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|51459827|gb|AAU03790.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia typhi
           str. Wilmington]
          Length = 450

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/439 (50%), Positives = 321/439 (73%), Gaps = 7/439 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ  AK+AVAIALRNR+RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   +  V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIAVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IP 
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKVLNGELDDTEIEISVADTTPVGGGSFEIPC 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M ++     ++ +ES++LID + + + +I + 
Sbjct: 193 IPGASMGVLNLGDMIGRALGSSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           EN GIVF+DE DKI A  S +G     VSREGVQRDLLPL+EG++V+TKYG + TDHILF
Sbjct: 253 ENDGIVFIDEIDKI-ASTSNSGAKNAEVSREGVQRDLLPLIEGTTVNTKYGPVKTDHILF 311

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DLLPE+QGR P+RV L  L K D   IL + E++LI QY  L+ TE +
Sbjct: 312 IASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTEEV 371

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K ++ID ++
Sbjct: 372 HLEFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDDKF 431

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +    +  D+  F+L
Sbjct: 432 VENQLSKIITNLDLAKFVL 450


>gi|220933249|ref|YP_002512148.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254802321|sp|B8GTA1|HSLU_THISH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219994559|gb|ACL71161.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 444

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/445 (51%), Positives = 304/445 (68%), Gaps = 16/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++I+GQ+DAKRAVAIALRNRWRRQQLP  LR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVQELDKHIVGQKDAKRAVAIALRNRWRRQQLPEALRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDLVD AI ++RE    +VR +
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAIKLLREQEMGKVRFR 122

Query: 126 ASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           A   AEER+LD L+                  S TR+ FRK+LR+G++ DKEI+I+V+ T
Sbjct: 123 AEEAAEERVLDVLLPAPRQAGFMSEPASAPEQSETRQKFRKRLREGQLDDKEIEIQVSAT 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  LF  + G GR +  ++ ++     L  +E+ R+++ D 
Sbjct: 183 PVGVEIMTPPGMEEMAS-QLQSLFQNI-GGGRSQTRKLKIRDAMKLLTDEEAARMVNQDE 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   ++  VE  GIVFLDE DK+  R    G  VSREGVQRDLLPLVEG +V+TK+G + 
Sbjct: 241 LKLRAVANVEQNGIVFLDEIDKVAKRGEYGGADVSREGVQRDLLPLVEGCTVNTKFGMVR 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L   DF  ILT+ +++L  QY  L
Sbjct: 301 TDHILFIASGAFHLSKPSDLIPELQGRLPIRVELSALTAEDFVRILTEPDASLTEQYSAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ ++F ED +  +A++A  +N    +IGARRL TVMER+LE ISF A D Q   V
Sbjct: 361 LQTEGVEVNFAEDGVRRIAEIATRVNERTENIGARRLHTVMERLLEQISFEAPDHQ-GPV 419

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   + +   + D+  +IL
Sbjct: 420 SIDAAYVDERLEELVQDEDLSRYIL 444


>gi|26250698|ref|NP_756738.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           CFT073]
 gi|91213473|ref|YP_543459.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UTI89]
 gi|110644267|ref|YP_671997.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           536]
 gi|117626197|ref|YP_859520.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|170683012|ref|YP_001746318.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           SMS-3-5]
 gi|191172723|ref|ZP_03034261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           F11]
 gi|215489262|ref|YP_002331693.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560998|ref|YP_002393911.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           S88]
 gi|218692215|ref|YP_002400427.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           ED1a]
 gi|218701364|ref|YP_002408993.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           IAI39]
 gi|218707557|ref|YP_002415076.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UMN026]
 gi|227885327|ref|ZP_04003132.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|237702964|ref|ZP_04533445.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|293407551|ref|ZP_06651470.1| hslU [Escherichia coli FVEC1412]
 gi|293413371|ref|ZP_06656032.1| heat shock protein HslVU [Escherichia coli B354]
 gi|298383299|ref|ZP_06992892.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia
           coli FVEC1302]
 gi|300899909|ref|ZP_07118117.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           198-1]
 gi|300938385|ref|ZP_07153132.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           21-1]
 gi|300975842|ref|ZP_07173191.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           45-1]
 gi|300986108|ref|ZP_07177722.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           200-1]
 gi|301022811|ref|ZP_07186652.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           69-1]
 gi|301048655|ref|ZP_07195667.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           185-1]
 gi|306813805|ref|ZP_07447981.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           NC101]
 gi|312969317|ref|ZP_07783519.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           2362-75]
 gi|331649785|ref|ZP_08350865.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M605]
 gi|331660486|ref|ZP_08361420.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA206]
 gi|331665586|ref|ZP_08366484.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA143]
 gi|331675426|ref|ZP_08376176.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA280]
 gi|331685671|ref|ZP_08386254.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H299]
 gi|32129633|sp|Q8FBC0|HSLU_ECOL6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|122421651|sp|Q1R3Y6|HSLU_ECOUT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|122957817|sp|Q0TAD3|HSLU_ECOL5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|166221478|sp|A1AIA6|HSLU_ECOK1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704522|sp|B7MI63|HSLU_ECO45 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704523|sp|B7NU74|HSLU_ECO7I RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704525|sp|B7NFN0|HSLU_ECOLU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704526|sp|B1LNN6|HSLU_ECOSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802305|sp|B7UNQ1|HSLU_ECO27 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802307|sp|B7N2S2|HSLU_ECO81 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|26111129|gb|AAN83312.1|AE016770_112 ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli CFT073]
 gi|91075047|gb|ABE09928.1| ATP-dependent hslVU protease ATP-binding subunit hslU [Escherichia
           coli UTI89]
 gi|110345859|gb|ABG72096.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli 536]
 gi|115515321|gb|ABJ03396.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|170520730|gb|ACB18908.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           SMS-3-5]
 gi|190907027|gb|EDV66628.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           F11]
 gi|215267334|emb|CAS11783.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218367767|emb|CAR05561.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli S88]
 gi|218371350|emb|CAR19182.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli IAI39]
 gi|218429779|emb|CAR10741.2| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli ED1a]
 gi|218434654|emb|CAR15587.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli UMN026]
 gi|222035643|emb|CAP78388.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli LF82]
 gi|226902901|gb|EEH89160.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|227837703|gb|EEJ48169.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|281181001|dbj|BAI57331.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE15]
 gi|284924031|emb|CBG37130.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Escherichia coli 042]
 gi|291425468|gb|EFE98507.1| hslU [Escherichia coli FVEC1412]
 gi|291468119|gb|EFF10617.1| heat shock protein HslVU [Escherichia coli B354]
 gi|294490881|gb|ADE89637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           IHE3034]
 gi|298276333|gb|EFI17853.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia
           coli FVEC1302]
 gi|300299522|gb|EFJ55907.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           185-1]
 gi|300306416|gb|EFJ60936.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           200-1]
 gi|300356537|gb|EFJ72407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           198-1]
 gi|300397360|gb|EFJ80898.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           69-1]
 gi|300410195|gb|EFJ93733.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           45-1]
 gi|300456655|gb|EFK20148.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           21-1]
 gi|305852803|gb|EFM53250.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           NC101]
 gi|307556074|gb|ADN48849.1| ATP-dependent hslVU protease ATP-binding subunit HslU [Escherichia
           coli ABU 83972]
 gi|307629006|gb|ADN73310.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UM146]
 gi|312285864|gb|EFR13782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           2362-75]
 gi|312948506|gb|ADR29333.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315289638|gb|EFU49031.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           110-3]
 gi|315292703|gb|EFU52055.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           153-1]
 gi|315298416|gb|EFU57671.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           16-3]
 gi|320196805|gb|EFW71427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli WV_060327]
 gi|323189647|gb|EFZ74926.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           RN587/1]
 gi|323949421|gb|EGB45310.1| heat shock protein HslVU [Escherichia coli H252]
 gi|323954298|gb|EGB50083.1| heat shock protein HslVU [Escherichia coli H263]
 gi|323964284|gb|EGB59767.1| heat shock protein HslVU [Escherichia coli M863]
 gi|323974340|gb|EGB69469.1| heat shock protein HslVU [Escherichia coli TW10509]
 gi|324006727|gb|EGB75946.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           57-2]
 gi|324012498|gb|EGB81717.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           60-1]
 gi|327250569|gb|EGE62277.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           STEC_7v]
 gi|330908252|gb|EGH36771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli AA86]
 gi|331041418|gb|EGI13568.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M605]
 gi|331052435|gb|EGI24472.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA206]
 gi|331057271|gb|EGI29261.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA143]
 gi|331067486|gb|EGI38891.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA280]
 gi|331077142|gb|EGI48357.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H299]
          Length = 443

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T+ ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|295095088|emb|CBK84178.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 443

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ DAKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDDAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+GE+ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQPEPSAARQAFRKKLREGELDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF ++ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ ID
Sbjct: 362 EGVNIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVGKHLDALVADEDLSRFIL 443


>gi|261819535|ref|YP_003257641.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium
           wasabiae WPP163]
 gi|261603548|gb|ACX86034.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           wasabiae WPP163]
          Length = 443

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQNKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+           G    S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KVKIKDAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V ID
Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|293393523|ref|ZP_06637833.1| heat shock protein HslVU [Serratia odorifera DSM 4582]
 gi|291423858|gb|EFE97077.1| heat shock protein HslVU [Serratia odorifera DSM 4582]
          Length = 443

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDGYIIGQSKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    +  R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIERNRTRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L+  DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALSTEDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT D I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTIDFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESSGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +  ++ D+  FIL
Sbjct: 422 AQYVGNHLDELVADEDLSRFIL 443


>gi|296136675|ref|YP_003643917.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia
           K12]
 gi|295796797|gb|ADG31587.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia
           K12]
          Length = 442

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/444 (50%), Positives = 313/444 (70%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIVSELDR++IGQ  AK+AVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPREIVSELDRFVIGQVKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+   + R 
Sbjct: 61  GKTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRT 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+             T T+ TR++ RK+LR+G++ +KEI+I++A   
Sbjct: 121 RAEDRAEDRILDVLLPAPADSSGHTPSVTETNPTRQMLRKRLREGQLDNKEIEIDLAVHP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     PG   +    +  +F+  MG  R K  +++V++    L+ +E+ +L++ D +
Sbjct: 181 ASVDIMGPPGMEDM-TEQIRSMFAN-MGQTRSKTRKVTVREAQKLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVFLDE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG + T
Sbjct: 239 KAGALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T+++L  QY  L+
Sbjct: 299 DHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ ++FT D I  +A+VA  +N    +IGARRL TVMER+LE++SF A   Q  TV 
Sbjct: 359 ATDGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVK 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA  V   +GD   + D+  ++L
Sbjct: 419 VDATMVNERLGDIARDEDLSRYVL 442


>gi|238892334|ref|YP_002917068.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262041701|ref|ZP_06014893.1| heat shock protein HslVU [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330004458|ref|ZP_08304952.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS
           92-3]
 gi|238544650|dbj|BAH61001.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040963|gb|EEW42042.1| heat shock protein HslVU [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536616|gb|EGF62943.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS
           92-3]
          Length = 444

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 310/444 (69%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+       G+T  S      R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERVLDVLIPPAKNNWGQTEPSQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           ++I  VE +GIVF+DE DKI  R  GN  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV 
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|291619409|ref|YP_003522151.1| HslU [Pantoea ananatis LMG 20103]
 gi|291154439|gb|ADD79023.1| HslU [Pantoea ananatis LMG 20103]
 gi|327395732|dbj|BAK13154.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Pantoea
           ananatis AJ13355]
          Length = 445

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/444 (51%), Positives = 312/444 (70%), Gaps = 15/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123

Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+             +  S+ R+ FRKKLR+G++ DKEI+I++A T   
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQTSEPSSARQSFRKKLREGQLDDKEIEIDLAATGPG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKEAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           D+I  VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM
Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALM 361

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ + FT+D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++V 
Sbjct: 362 NTEGVNIHFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRSGESVT 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+ +  ++ D+  FIL
Sbjct: 422 IDAEYVGKHLDELVADEDLSRFIL 445


>gi|212213472|ref|YP_002304408.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           CbuG_Q212]
 gi|212011882|gb|ACJ19263.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii CbuG_Q212]
          Length = 465

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEG
Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALMADDFVRILTEP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|189043907|sp|A9KH31|HSLU_COXBN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 447

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 313/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 61  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+G + DKEI++
Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 181 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 231

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV RD   G  VSREGVQRDLLPLVEG
Sbjct: 232 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEG 291

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 292 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 351

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 352 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 411

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 412 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 447


>gi|71278515|ref|YP_271019.1| ATP-dependent protease ATP-binding subunit HslU [Colwellia
           psychrerythraea 34H]
 gi|123760948|sp|Q47W03|HSLU_COLP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71144255|gb|AAZ24728.1| heat shock protein HslVU, ATPase subunit HslU [Colwellia
           psychrerythraea 34H]
          Length = 443

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/443 (52%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD +I+GQ DAKRAVAIALRNRWRR QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDSHIVGQSDAKRAVAIALRNRWRRMQLDKDLRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+AI +V+ES  D V+  
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADMAIKMVKESEMDRVKHL 122

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+           K+  SNTR++FRKKLR+G++ DKEI++++A     
Sbjct: 123 AEEAAEERILDVLLPPARDGFGNDEKSDDSNTRQIFRKKLREGKLDDKEIELDLAAPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   M S +  K ++ ++     L  +E+ ++++ D + +
Sbjct: 183 VEIMAPPGMEDM-TSQLQNMFQN-MSSEKTNKRKLKIKDALKALQEEEAAKIVNQDDIKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I  VE  GIVF+DE DKI  R DS  G  VSREGVQRDLLPLVEGS+VSTK+G I TD
Sbjct: 241 KAIDAVEQNGIVFIDEIDKICKRADSSGGGDVSREGVQRDLLPLVEGSTVSTKHGMIKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+ 
Sbjct: 301 HILFIASGAFQMTKPSDLIPELQGRLPIRVELQALTADDFVRILTEPFASLTEQYIALLA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT+D I A+AD A  +N T  +IGARRL T+MER++ED+SF+A     +T+ I
Sbjct: 361 TEGVSVTFTDDGIKAIADSAWQVNETTENIGARRLHTMMERLVEDLSFNADQRSGETISI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + +   + D+  FIL
Sbjct: 421 DQAYVTKILSEVVKDEDLSRFIL 443


>gi|117923333|ref|YP_863950.1| ATP-dependent protease ATP-binding subunit HslU [Magnetococcus sp.
           MC-1]
 gi|166221591|sp|A0L3K1|HSLU_MAGSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|117607089|gb|ABK42544.1| heat shock protein HslVU, ATPase subunit HslU [Magnetococcus sp.
           MC-1]
          Length = 461

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/461 (51%), Positives = 316/461 (68%), Gaps = 31/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F+PREIVSELDRYIIGQ  AKRAVAIALRNRWRRQ+L A++R+E+ PKNIL++GPTGVG
Sbjct: 3   EFTPREIVSELDRYIIGQNMAKRAVAIALRNRWRRQRLSAEMREEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++ I +V E  + +V+ Q
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVESIVRDLVEMGITMVTEEAKVKVQFQ 122

Query: 126 ASINAEERILDALVGKTATSN----------------------------TREVFRKKLRD 157
           A   AEER+LD L+   +T                              +R+  RK LR+
Sbjct: 123 AEDQAEERLLDILLPLPSTGQGEGSAHFGLFGQMEGSSVKPEPTAQQKESRQKMRKMLRE 182

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+EIDI++ +    +   ++     +  +NL ++   +MG GR K  R+ V +   
Sbjct: 183 GKLDDREIDIDLKEQRR-VPMMEVITPQGMEGINLQDMLGGLMG-GRTKTRRVKVGEAMK 240

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLL 276
            L  +E+ +L+D DTV + +I+ VE  GIVFLDE DK+ AR S   G  VSREGVQRDLL
Sbjct: 241 LLTEEEAGKLVDQDTVQQVAIERVEQSGIVFLDELDKVCARGSETRGGDVSREGVQRDLL 300

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           PLVEG++VSTKYG + +DHILFIASGAF +++P+DLLPE+QGR P+RV L+SL K +F  
Sbjct: 301 PLVEGTTVSTKYGMVKSDHILFIASGAFQLAKPSDLLPELQGRLPIRVELESLGKGEFVR 360

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ E+ L  QY  LM  E I L FT++ I+ALA++A  +N T  +IGARRL TVME++
Sbjct: 361 ILTEPENALTRQYAALMGVENIELVFTDEGIEALAEIATRVNETAENIGARRLHTVMEKL 420

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L+++SFSA D   + VVIDA YV   + D  ++ D+  FIL
Sbjct: 421 LDELSFSAPDRGGERVVIDAAYVNRQLSDLAADEDLSRFIL 461


>gi|119505529|ref|ZP_01627601.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119458638|gb|EAW39741.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 436

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/437 (52%), Positives = 312/437 (71%), Gaps = 8/437 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV  LD++IIGQ +AKRAVAIALRNRWRRQQL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHALDQHIIGQSEAKRAVAIALRNRWRRQQLEPDLRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE +IRDLV+ AI ++RE    +VR +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESMIRDLVETAITLLREEALIKVRTR 122

Query: 126 ASINAEERILDALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           A   AEER+LD L+        +NTR++ RKKLR+G+++D+E++IEV +T+S +     P
Sbjct: 123 AKDAAEERLLDLLLPPDRDDNNANTRQLLRKKLREGDLNDREVEIEVKNTASSVDIMAPP 182

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G   +    L  +F+ +   G+ +K    +Q+    L  +E+ +LID D +   ++   E
Sbjct: 183 GMEEM-TQQLQGMFANLNKGGKPRK--APIQEALKLLEDEEASKLIDPDDLKAQALTAAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GI+F+DE DK+  R    G  VSREGVQRDLLPL+EG SV+TK+G+I TDHILFIASG
Sbjct: 240 QTGIIFIDEIDKVAKRGEMGGADVSREGVQRDLLPLIEGCSVTTKHGTIKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+S+PADL+PE+QGR P+RV L++L   DFR ILT+ ++ L  QY+ L+ TEG+ + F
Sbjct: 300 AFHLSKPADLIPELQGRLPIRVELEALTTEDFRRILTEPKAALTAQYQALLATEGVKIHF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVR 420
           T+  ++ +A++A  +N    +IGARRL T MER+LE+ISFSASD  + E  V ID +YV 
Sbjct: 360 TDSGVERIAEIAWQVNERAENIGARRLATAMERLLEEISFSASDAGVGESEVTIDRDYVD 419

Query: 421 LHIGDFPSETDMYHFIL 437
             +G+  S+ D+  FIL
Sbjct: 420 SQLGELASDEDLSRFIL 436


>gi|251787764|ref|YP_003002485.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae
           Ech1591]
 gi|247536385|gb|ACT05006.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae
           Ech1591]
          Length = 443

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEENLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVAIKMVRQQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEESHEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIREAFKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++E++S+ AS++  +TV ID
Sbjct: 362 EGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEEVSYGASEMSGQTVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443


>gi|209364282|ref|YP_001425418.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082215|gb|ABS78184.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii Dugway 5J108-111]
          Length = 465

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/456 (51%), Positives = 313/456 (68%), Gaps = 32/456 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                  +   S TR++FRKKLR+G + DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221
           EV+   S    F+I     +G   + E+ S++ G      S R K  R+ V+     L  
Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +L+D D +   ++  VE  GIVF+DE DKIV RD   G  VSREGVQRDLLPLVEG
Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ 
Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++S
Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A+D Q +++ IDA+YV   +     + D+  +IL
Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|271502450|ref|YP_003335476.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech586]
 gi|270346005|gb|ACZ78770.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech586]
          Length = 443

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G + DKEI+IE+A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGLLDDKEIEIELAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIREAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++ED+S+ AS++  +TV ID
Sbjct: 362 EGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMNGQTVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443


>gi|206890762|ref|YP_002249198.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|254802320|sp|B5YG00|HSLU_THEYD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206742700|gb|ACI21757.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 445

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/447 (49%), Positives = 319/447 (71%), Gaps = 19/447 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV ELD++IIGQ+ AK+AVAIALRNR+RRQ LP +LRDE++PKNIL++GPTGVG
Sbjct: 3   NLTPKKIVEELDKFIIGQESAKKAVAIALRNRFRRQLLPKELRDEILPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE +KFTE+GYVGR+VE IIRDL +VA+N+V++   + V+E+
Sbjct: 63  KTEIARRLARLVNAPFVKVEASKFTEVGYVGRDVESIIRDLTEVAMNMVKQEHTERVQEK 122

Query: 126 ASINAEERILDALVG-------------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           A   AEER+LD L+              +T    TRE  RK+LR+G + ++ I+I   D 
Sbjct: 123 ARQLAEERVLDILLPQPRYTRDMNEAEERTRYKETREKLRKQLREGILDERYIEI---DL 179

Query: 173 SSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              +  F I    ++  +  NL E+    +    K+K ++ + +      ++E+++LIDM
Sbjct: 180 KEKVVPFGIISNVAMEEIEINLKEMLGSFLPEKVKRK-KVKIPEAIQLFTQEEANKLIDM 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V +++I+ VE  GIVF+DE DKI +R S  G  VSREGVQRDLLP+VEGS+V+TKYG 
Sbjct: 239 EKVTKEAIERVEQTGIVFIDEIDKIASRGSSYGPDVSREGVQRDLLPIVEGSTVTTKYGP 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL K +F  ILT+ ++ LI QY 
Sbjct: 299 VKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELNSLGKEEFVRILTEPDNALIKQYI 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+FT+D I+ +AD++  +N    +IGARRL TVME++LEDISF+AS+L+ +
Sbjct: 359 ALLATEDVYLEFTQDGIEEIADISQQVNEKTENIGARRLHTVMEKLLEDISFNASELKGQ 418

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + IDA++VR  + +     D+  +IL
Sbjct: 419 KITIDAKFVREKLSEIIKSEDLSRYIL 445


>gi|78484749|ref|YP_390674.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363035|gb|ABB41000.1| ATP-dependent hsl protease ATP-binding subunit HslU [Thiomicrospira
           crunogena XCL-2]
          Length = 440

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/441 (50%), Positives = 309/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD YI+GQ +AK++VAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 2   MTPKEIVHELDSYIVGQAEAKKSVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVGK 61

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TK+TE+GYVGR V+ II+DLV+ AI + RE     V+ +A
Sbjct: 62  TEIARRLAKLANAPFIKVEATKYTEVGYVGREVDSIIKDLVENAIKMQREQAMKGVKNKA 121

Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEE+ILD L+              S TR+ FRK+LR+GE+ DKEI+I++      + 
Sbjct: 122 QDLAEEKILDILLPPARGREEDSYEHMSETRQKFRKRLREGELDDKEIEIDLNAAPPHVE 181

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L ++F   +  G+K K ++ +++    L  +E+ R+ID + +   +
Sbjct: 182 IMGAPGMEEM-TNQLQDMFQG-LSQGKKNKRKLPIKQAMKLLTEEEAQRIIDQEDLKTKA 239

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+ VE  GIVF+DE DK+  R  G G G VSREGVQRDLLPL+EGS+VSTKYG I TDHI
Sbjct: 240 IENVEQNGIVFIDEIDKVAKRQEGAGGGDVSREGVQRDLLPLIEGSTVSTKYGMIKTDHI 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+ASGAFH+++P+DL+PE+QGR P+RV LKSL   DF  ILT+ ++ LI Q  EL+KTE
Sbjct: 300 LFVASGAFHLAKPSDLIPELQGRLPIRVELKSLKVEDFIRILTEPKAALITQAIELLKTE 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT + I  LA++A ++N T  +IGARRL TVME +LE++SF+A D  ++TV+ID 
Sbjct: 360 GVKIEFTGEGIKRLAEIAYHVNETTENIGARRLHTVMEHLLEEVSFNAPDFGQETVIIDE 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            +V   +G+   + D+  +IL
Sbjct: 420 AFVNDRLGELSQDQDLSQYIL 440


>gi|206577264|ref|YP_002241200.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella
           pneumoniae 342]
 gi|288937836|ref|YP_003441895.1| heat shock protein HslVU, ATPase HslU [Klebsiella variicola At-22]
 gi|290513062|ref|ZP_06552425.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp.
           1_1_55]
 gi|238065800|sp|B5XZ37|HSLU_KLEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206566322|gb|ACI08098.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella
           pneumoniae 342]
 gi|288892545|gb|ADC60863.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella variicola
           At-22]
 gi|289774444|gb|EFD82449.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp.
           1_1_55]
          Length = 444

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/444 (51%), Positives = 308/444 (69%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERVLDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           ++I  VE +GIVF+DE DKI  R  GN  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV+
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVI 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|238750844|ref|ZP_04612342.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           rohdei ATCC 43380]
 gi|238710988|gb|EEQ03208.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           rohdei ATCC 43380]
          Length = 443

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDGYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+   +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRQQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQADENQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+ +  ++ D+  FIL
Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443


>gi|167551412|ref|ZP_02345167.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323718|gb|EDZ11557.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 443

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLASAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|94500583|ref|ZP_01307114.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65]
 gi|94427373|gb|EAT12352.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65]
          Length = 450

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/447 (50%), Positives = 306/447 (68%), Gaps = 16/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IV ELD++I+GQ  AKR+VAIALRNRWRR QLP D R+E+ PKNIL++GPTGVG
Sbjct: 5   NLTPAQIVKELDKHIVGQSVAKRSVAIALRNRWRRMQLPEDFRNEITPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ APFIKVE TKFTE+GYVGR+VE IIRDLV+    ++RE     V E+
Sbjct: 65  KTEIARRLAKLSNAPFIKVEATKFTEVGYVGRDVETIIRDLVETGFKLLREQEMANVSER 124

Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   A ER+LDAL+            K   S+TR +FRKK+ +GE+ DKEI+I+VA    
Sbjct: 125 AKEAAVERVLDALLRPARNSYETEADKPEDSSTRILFRKKVLNGEMDDKEIEIDVAQPQV 184

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    +  +FS + GS +  K +M+V+     +  +E+  ++++D + 
Sbjct: 185 GVEIMAPPGMEDM-TNQIQSMFSNLGGSNKTNKRKMNVKDALKMIQDEEAHNMLNIDELK 243

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++++VE  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG SVSTKYG + TD
Sbjct: 244 SQAVELVEQNGIVFIDEIDKVAKRQEAGGGDVSREGVQRDLLPLIEGCSVSTKYGMLKTD 303

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK L+ 
Sbjct: 304 HILFIASGAFHLSKPSDLIPELQGRLPIRVELEALTPDDFKRILTEPSASLTEQYKALLG 363

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEK 410
           TEG+ ++FTED I+ LA  A  +N T  +IGARRL T+MER+LE +SF A  L     + 
Sbjct: 364 TEGLSVEFTEDGIERLAQTAFKVNETTENIGARRLHTMMERLLEKVSFDAESLATQYSQT 423

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + I+A +V  H+GD   + D+  FIL
Sbjct: 424 PLQINAAFVDEHLGDIAQDEDLSRFIL 450


>gi|157827342|ref|YP_001496406.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia bellii
           OSU 85-389]
 gi|157802646|gb|ABV79369.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU
           85-389]
          Length = 452

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 15  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 75  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ER+L++LVGKT++S TRE F++K+  GE+ D EI+I VADT+     +F+IPG
Sbjct: 135 NAREKAIERVLESLVGKTSSSETREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  +  G+ + K  +M V++    ++ +ES++LID + + + +I +V
Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254

Query: 242 ENYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI  VA        +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI
Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A  +N  + DIGARRL T++E +LEDISF AS++Q + + ID ++V
Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 435 ENQLSKILTNLDLAKFVL 452


>gi|226326796|ref|ZP_03802314.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198]
 gi|225204633|gb|EEG86987.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198]
          Length = 444

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREI SELDR+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    D+ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIDKNRFRA 123

Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+             +  S  R+ FRKKLR+G++ DKEI+IE++ T   
Sbjct: 124 EEMAEERILDVLIPPAKNNWGVAEQASEPSAARQSFRKKLREGQLDDKEIEIELSATPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M ++  +  ++ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKDAFKLIVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 QAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM 
Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYEALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FTED I  +A+ A  +N T  +IGARRL TV+ER++E+IS+ AS+ Q ++++I
Sbjct: 362 TEGVSISFTEDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGQSILI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV+ H+ +  ++ D+  FIL
Sbjct: 422 DAEYVKQHLDELVADEDLSRFIL 444


>gi|319791658|ref|YP_004153298.1| heat shock protein hslvu, atpase subunit hslu [Variovorax paradoxus
           EPS]
 gi|315594121|gb|ADU35187.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus
           EPS]
          Length = 442

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/444 (50%), Positives = 310/444 (69%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPHEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVDEKLRSEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES   +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLAEIAVKQTRESESAKVRA 120

Query: 125 QASINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+       G TA     + TR+ FRKKLR+ ++ DKEI++++A+T 
Sbjct: 121 RAEDAAEDRILDVLLPPARGADGATAAIDGPNPTRQAFRKKLREHQLDDKEIELDLAETR 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     P G       L  +F + MG G++K  ++ + +    L+ +E+ +L++ D +
Sbjct: 181 TPLEIMG-PAGMEEMTEQLRGMFGQ-MGGGKRKTRKLKIAEALRLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I   E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++V+TKYG + T
Sbjct: 239 RAQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVTTKYGVVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF  ILT T ++L+ QY+ L+
Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ LDF  D +  LA +A  +N    +IGARRL TVMER+L+++SF A+ ++ +T+ 
Sbjct: 359 ATEGVTLDFQPDGVTRLASIAFEVNERTENIGARRLSTVMERLLDEVSFGAARIEGQTIR 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   +     + D+  FIL
Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442


>gi|91205631|ref|YP_537986.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii
           RML369-C]
 gi|123388112|sp|Q1RIB7|HSLU_RICBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91069175|gb|ABE04897.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia bellii
           RML369-C]
          Length = 452

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 15  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 75  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ER+L++LVGKT++S TRE F++K+  GE+ D EI+I VADT+     +F+IPG
Sbjct: 135 NAREKAIERVLESLVGKTSSSKTREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  +  G+ + K  +M V++    ++ +ES++LID + + + +I +V
Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254

Query: 242 ENYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI  VA        +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI
Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A  +N  + DIGARRL T++E +LEDISF AS++Q + + ID ++V
Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 435 ENQLSKILTNLDLAKFVL 452


>gi|332159730|ref|YP_004296307.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318603861|emb|CBY25359.1| ATP-dependent hsl protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325663960|gb|ADZ40604.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330858960|emb|CBX69322.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           enterocolitica W22703]
          Length = 443

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+ +  ++ D+  FIL
Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443


>gi|192359011|ref|YP_001980928.1| ATP-dependent protease ATP-binding subunit HslU [Cellvibrio
           japonicus Ueda107]
 gi|226704519|sp|B3PI65|HSLU_CELJU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|190685176|gb|ACE82854.1| heat shock protein HslVU, ATPase subunit HslU [Cellvibrio japonicus
           Ueda107]
          Length = 440

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 315/441 (71%), Gaps = 12/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++I+GQQDAKRAVAIALRNRWRR QLPAD+R E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVHELDKHIVGQQDAKRAVAIALRNRWRRMQLPADMRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVDVAI + RE     V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDVAIKLRREQAMKAVQYR 122

Query: 126 ASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A+  AEERILD L+              S+TR++FRKKLR+G++ DKEI+I+VA  S  +
Sbjct: 123 AAEAAEERILDVLLPPARDTSEEESKHESSTRQIFRKKLREGQLDDKEIEIDVAAASVGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  +G  R KK +M+V+K + +L  +E+ +L+  + +   
Sbjct: 183 EIMAPPGMEEM-TSQLQNMFSS-LGRERTKKTKMTVKKAFKQLQDEEAAKLVSEEDIKTQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +++ VE  GIVF+DE DK+  R + +G  VSREGVQRDLLPL+EG +VSTK+G + TDHI
Sbjct: 241 ALETVEQNGIVFIDEIDKVARRGNVSGADVSREGVQRDLLPLIEGCTVSTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAFH+S+P+DL+PE+QGR P+RV L++L   DF  ILT+ +++L  Q + L+KTE
Sbjct: 301 LFITSGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPKASLTEQQQALLKTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT+D I  +A+ A ++N    +IGARRL T++ER+LED+SF A +    ++ ID 
Sbjct: 361 GVDIQFTQDGIRRIAETAFDVNERTENIGARRLHTILERLLEDVSFDAGN-DTSSIRIDG 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G+     D+  +IL
Sbjct: 420 AYVDAHLGELAKNEDLSRYIL 440


>gi|311281625|ref|YP_003943856.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           SCF1]
 gi|308750820|gb|ADO50572.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           SCF1]
          Length = 444

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/444 (51%), Positives = 309/444 (69%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQAQEPSAARQAFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           D+I+ VE +GIVF+DE DKI  R  GN  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKR-GGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTQDFERILTEPNASVTVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ + FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ 
Sbjct: 361 ATEGVDISFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDALVADEDLSRFIL 444


>gi|16767357|ref|NP_462972.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56415935|ref|YP_153010.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62182550|ref|YP_218967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161617227|ref|YP_001591192.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991667|ref|ZP_02572766.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233036|ref|ZP_02658094.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237718|ref|ZP_02662776.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168244150|ref|ZP_02669082.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263003|ref|ZP_02684976.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168467437|ref|ZP_02701274.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821555|ref|ZP_02833555.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444107|ref|YP_002043354.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194449297|ref|YP_002048094.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194470697|ref|ZP_03076681.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194733928|ref|YP_002117012.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197248426|ref|YP_002149019.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197264234|ref|ZP_03164308.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197364862|ref|YP_002144499.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198242037|ref|YP_002218017.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388213|ref|ZP_03214825.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930203|ref|ZP_03221180.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205354333|ref|YP_002228134.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859278|ref|YP_002245929.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224585902|ref|YP_002639701.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238912237|ref|ZP_04656074.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|17865713|sp|O30911|HSLU_SALTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62286734|sp|Q5PIR9|HSLU_SALPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|81309527|sp|Q57HC6|HSLU_SALCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|189043918|sp|A9MZI1|HSLU_SALPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690015|sp|B5F0S2|HSLU_SALA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690346|sp|B5FPU0|HSLU_SALDC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690415|sp|B5QXM0|HSLU_SALEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690527|sp|B5RF80|HSLU_SALG2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690605|sp|B4TCM8|HSLU_SALHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690712|sp|B4TPV2|HSLU_SALSV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690772|sp|B5BJK8|HSLU_SALPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238693575|sp|B4T0T8|HSLU_SALNS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802316|sp|C0Q441|HSLU_SALPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|9650897|emb|CAC00720.1| heat shock protein [Salmonella typhimurium]
 gi|16422658|gb|AAL22931.1| ATPase component of the HslUV protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130192|gb|AAV79698.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130183|gb|AAX67886.1| ATPase component of the HslUV protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366591|gb|ABX70359.1| hypothetical protein SPAB_05068 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402770|gb|ACF62992.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407601|gb|ACF67820.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457061|gb|EDX45900.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709430|gb|ACF88651.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630235|gb|EDX48875.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197096339|emb|CAR61943.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212129|gb|ACH49526.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197242489|gb|EDY25109.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289363|gb|EDY28728.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197936553|gb|ACH73886.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605311|gb|EDZ03856.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320607|gb|EDZ05809.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205274114|emb|CAR39123.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205330063|gb|EDZ16827.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332829|gb|EDZ19593.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336943|gb|EDZ23707.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341830|gb|EDZ28594.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348092|gb|EDZ34723.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711081|emb|CAR35455.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470430|gb|ACN48260.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261249207|emb|CBG27069.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996391|gb|ACY91276.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160598|emb|CBW20129.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915207|dbj|BAJ39181.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320088502|emb|CBY98261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225383|gb|EFX50441.1| ATP-dependent hsl protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613146|gb|EFY10090.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619226|gb|EFY16109.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322626093|gb|EFY22905.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626447|gb|EFY23253.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322632439|gb|EFY29187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635079|gb|EFY31800.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642719|gb|EFY39309.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646455|gb|EFY42966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650757|gb|EFY47158.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322652941|gb|EFY49278.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657255|gb|EFY53535.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662257|gb|EFY58472.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666790|gb|EFY62966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672062|gb|EFY68177.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675783|gb|EFY71855.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681800|gb|EFY77826.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684004|gb|EFY80013.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322717048|gb|EFZ08619.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132437|gb|ADX19867.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193276|gb|EFZ78491.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197633|gb|EFZ82766.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323200792|gb|EFZ85863.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207202|gb|EFZ92154.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211405|gb|EFZ96246.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218550|gb|EGA03258.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323220968|gb|EGA05400.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225945|gb|EGA10164.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323231624|gb|EGA15736.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236128|gb|EGA20206.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239451|gb|EGA23500.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243956|gb|EGA27967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249318|gb|EGA33235.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250439|gb|EGA34322.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258893|gb|EGA42545.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260137|gb|EGA43760.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265256|gb|EGA48753.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270478|gb|EGA53924.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326625809|gb|EGE32154.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629458|gb|EGE35801.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990920|gb|AEF09903.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 443

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|209395997|ref|YP_002273451.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4115]
 gi|238065794|sp|B5YZ71|HSLU_ECO5E RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|209157397|gb|ACI34830.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4115]
          Length = 443

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQNNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|256823470|ref|YP_003147433.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis
           DSM 16069]
 gi|256797009|gb|ACV27665.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/447 (50%), Positives = 310/447 (69%), Gaps = 17/447 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV ELD++IIGQ+DAKR+VAIALRNRWRR Q+  +LR+E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELDKHIIGQKDAKRSVAIALRNRWRRMQVDEELRNEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD A  ++RE    +V+ 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAFKMLREQEMAKVQN 120

Query: 125 QASINAEERILDALVG--------------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +A   AEER+LDAL+               ++  S+ R+VFRKKLR GE+ DK+I+I+VA
Sbjct: 121 RAHDAAEERVLDALLPPPRKTSDSQWDEQPQSQDSSARQVFRKKLRQGELDDKDIEIDVA 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +  I     PG   +    L  +F   M   + K+ ++ V+     L  +E+ +LID 
Sbjct: 181 QMAVGIDIMAPPGMEDM-TSQLQSMFQN-MSPSKSKQRKLKVKDALKMLTEEEAAKLIDQ 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   +++ VE +GIVFLDE DK+  R   N  GVSREGVQRDLLPLVEG +V+TKYG 
Sbjct: 239 EELKIKAVEAVEQHGIVFLDEIDKVAKRGEHNDGGVSREGVQRDLLPLVEGCTVNTKYGM 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ ++ L  QY+
Sbjct: 299 LKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELRALTPDDFKRILTEPDAALTKQYQ 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG  + F E  I+ +A+ A  +N +  +IGARRL TVMER+L++ISF AS+  E 
Sbjct: 359 ALLATEGKKIQFDESGIEKIAEYAFQVNESTENIGARRLHTVMERLLDEISFDASEDNE- 417

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ID  YV   + +   + D+  FIL
Sbjct: 418 TLLIDDAYVTKQLSELADDEDLSRFIL 444


>gi|152972726|ref|YP_001337872.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|166221589|sp|A6TGC1|HSLU_KLEP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150957575|gb|ABR79605.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 444

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/444 (51%), Positives = 307/444 (69%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+V+IALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVSIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           ++I  VE +GIVF+DE DKI  R  GN  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV 
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|304398972|ref|ZP_07380841.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB]
 gi|304353432|gb|EFM17810.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB]
          Length = 445

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/444 (50%), Positives = 312/444 (70%), Gaps = 15/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A +S  
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASSPG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           D+I+ VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF+ ILT+  +++ +QYK LM
Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKALM 361

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTE+ I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++  
Sbjct: 362 NTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESFT 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV  H+ +  ++ D+  FIL
Sbjct: 422 IDADYVAKHLDELVADEDLSRFIL 445


>gi|16762344|ref|NP_457961.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143832|ref|NP_807174.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213161768|ref|ZP_03347478.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416546|ref|ZP_03349690.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213426207|ref|ZP_03358957.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213615559|ref|ZP_03371385.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648009|ref|ZP_03378062.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289828420|ref|ZP_06546302.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|21759176|sp|Q8Z2Z0|HSLU_SALTI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|25296071|pir||AB0939 heat shock protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504648|emb|CAD09532.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139468|gb|AAO71034.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 443

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443


>gi|238754734|ref|ZP_04616086.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           ruckeri ATCC 29473]
 gi|238707042|gb|EEP99407.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           ruckeri ATCC 29473]
          Length = 440

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +  R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIENNRYRA 120

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 121 EELAEERILDVLIPPAKNNWGQPDESQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPMG 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 181 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 239 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 299 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALMAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT + I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   +++ ID
Sbjct: 359 EGVTIDFTAEGIRRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASESNGQSITID 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +  ++ D+  FIL
Sbjct: 419 AKYVGDHLDELVADEDLSRFIL 440


>gi|83589878|ref|YP_429887.1| ATP-dependent protease ATP-binding subunit HslU [Moorella
           thermoacetica ATCC 39073]
 gi|83572792|gb|ABC19344.1| heat shock protein HslVU, ATPase subunit HslU [Moorella
           thermoacetica ATCC 39073]
          Length = 461

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/462 (48%), Positives = 321/462 (69%), Gaps = 30/462 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +F+PR+IV+ELDRYIIGQ++AK+ VA+ALRNR+RRQ+L  +LRDE++PKNI+++GPTGV
Sbjct: 1   MDFTPRQIVAELDRYIIGQEEAKKCVAVALRNRYRRQKLNPELRDEVLPKNIIMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L GAPF+KVE T+FTE+GYVGR+VE +IR+LV+ A+ +V+  +R EV  
Sbjct: 61  GKTEIARRLAKLVGAPFLKVEATRFTEVGYVGRDVESMIRELVENAVRMVKIEKRAEVEA 120

Query: 125 QASINAEERILDALV---GKTATSNT--------------------------REVFRKKL 155
           +A+  AE+R+LD LV   GK   ++                           R + R+KL
Sbjct: 121 KAAKMAEKRLLDLLVPRQGKEKGTHNPWEVLFGGAQVNSEGTVLEEESLREKRAILREKL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  E+ D  +++EV DT+          G     +NL ++   ++   RK+K  ++V + 
Sbjct: 181 RRQELEDMMVEVEVEDTTGPGGVILGGLGLEELGINLQDMLGNMLPR-RKRKRLVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L + E+D+LIDMD V   ++Q VE  GI+FLDE DKI  R+S +G  VSREGVQRD+
Sbjct: 240 RRILTQQEADKLIDMDDVAAIAVQRVEQEGIIFLDEIDKIAGRESSHGPDVSREGVQRDI 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V TKYG + TDHILFIA+GAFHV++PADL+PE+QGRFP+RV LKSL + DF+
Sbjct: 300 LPIVEGTTVQTKYGPVKTDHILFIAAGAFHVAKPADLIPELQGRFPLRVELKSLGREDFQ 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ +++L+ QY  L+  +GI L F+ D+I  +AD+A  +N+   DIGARRL T++E+
Sbjct: 360 RILTEPKNSLLKQYTALLAVDGIELQFSADAIAEIADIAYTVNTQGEDIGARRLHTILEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L+D+ F A ++QE+ VVID  YVR  +GD    TD+  +IL
Sbjct: 420 ILQDLLFEAPEVQERKVVIDRTYVRKQLGDIMQRTDVQAYIL 461


>gi|156935935|ref|YP_001439851.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter
           sakazakii ATCC BAA-894]
 gi|166221479|sp|A7ML81|HSLU_ENTS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|156534189|gb|ABU79015.1| hypothetical protein ESA_03829 [Cronobacter sakazakii ATCC BAA-894]
          Length = 443

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+GE+ DKEI+I +A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM+T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASVTVQYKALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ ID
Sbjct: 362 EGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|331005991|ref|ZP_08329334.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC1989]
 gi|330420167|gb|EGG94490.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC1989]
          Length = 449

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/449 (50%), Positives = 314/449 (69%), Gaps = 19/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV ELD++I+GQ+ AKRAVAIALRNRWRR Q+  +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKEIVHELDKHIVGQKSAKRAVAIALRNRWRRLQVSENLRPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDLVD++I + RE    +VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLVDMSIKLHREQAVKKVRHR 122

Query: 126 ASINAEERILDALV----------------GKTAT-SNTREVFRKKLRDGEISDKEIDIE 168
           A   AEERIL+AL+                G +   S+TR++FRKKLR+G++ DKEIDIE
Sbjct: 123 AEEIAEERILNALLRPARDADGTDNSKDDEGDSGNQSSTRQLFRKKLREGDLDDKEIDIE 182

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V+     +     PG   +    L  +FS  M S +KK +++ +++ + +L  DE+ +L+
Sbjct: 183 VSAAKVGVEIMAPPGMEDM-TDQLQNMFSS-MSSDKKKTVKLPIKQAFKQLCDDEAAKLV 240

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + D +   +I+  E  GIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +VSTK+
Sbjct: 241 NDDELKSQAIEAAEQNGIVFIDEIDKVAKRGDTSGGDVSREGVQRDLLPLIEGCTVSTKH 300

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFI SGAFH+++P+DL+PE+QGR P+RV L++L+  DF  ILT+ +++L  Q
Sbjct: 301 GMIKTDHILFITSGAFHLTKPSDLIPELQGRLPIRVELEALSPDDFERILTEPDASLTEQ 360

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            + LM TEG+ L F++D I  +A+ A  +N    +IGARRL TV+ER+LEDISF +    
Sbjct: 361 QEALMATEGVALSFSKDGIRRIAETAWEVNERTENIGARRLHTVIERLLEDISFESGSNG 420

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+T+ IDAE+V   +G+   + D+  FIL
Sbjct: 421 EETINIDAEHVEKALGELVKDEDLSRFIL 449


>gi|56551143|ref|YP_161982.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542717|gb|AAV88871.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 430

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/436 (52%), Positives = 316/436 (72%), Gaps = 7/436 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV  LD +I+GQ++AKRAVA+A+RNRWRRQ LP  L+DE+ PKNIL++GPT
Sbjct: 1   MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R  V
Sbjct: 61  GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+A   A ER+L+ALVGK A+  TRE FR++  DG + ++E+++E+ +  S     +IP
Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPS--MPVEIP 178

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G G  VG+++LS++  K     R K+ R+ V++ +  L+ +E+DR +D D + R ++   
Sbjct: 179 GMGGQVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNA 235

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIAS
Sbjct: 236 EANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIAS 294

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHV++P+DLLPE+QGR P+RV L +L + DF  IL+ T ++L+ QY+ L+ TE ++L 
Sbjct: 295 GAFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLH 354

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F ED I  LA +A  +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV  
Sbjct: 355 FEEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDE 414

Query: 422 HIGDFPSETDMYHFIL 437
            +      +D+  +IL
Sbjct: 415 RLSGIAKNSDLSKYIL 430


>gi|7245635|pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245636|pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245637|pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245638|pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245733|pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245734|pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245735|pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245736|pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245737|pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245738|pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
          Length = 442

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 3   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 62

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 63  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 122

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 123 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 183 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 241 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 301 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 361 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 421 ADYVSKHLDALVADEDLSRFIL 442


>gi|11513635|pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
 gi|11513636|pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
 gi|17942585|pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942586|pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942591|pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942592|pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942603|pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942604|pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942605|pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942606|pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942611|pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942612|pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
          Length = 449

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 10  MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 70  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 129

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 130 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 189

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 190 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 247

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 248 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 308 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 368 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 428 ADYVSKHLDALVADEDLSRFIL 449


>gi|123440504|ref|YP_001004498.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|166221617|sp|A1JI08|HSLU_YERE8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122087465|emb|CAL10246.1| ATP-binding heat shock protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 443

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+ +  ++ D+  FIL
Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443


>gi|241761498|ref|ZP_04759586.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753207|ref|YP_003226100.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374405|gb|EER63902.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552570|gb|ACV75516.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 430

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/436 (52%), Positives = 316/436 (72%), Gaps = 7/436 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV  LD +I+GQ++AKRAVA+A+RNRWRRQ LP  L+DE+ PKNIL++GPT
Sbjct: 1   MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R  V
Sbjct: 61  GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+A   A ER+L+ALVGK A+  TRE FR++  DG + ++E+++E+ +  S     +IP
Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPS--MPVEIP 178

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G G  VG+++LS++  K     R K+ R+ V++ +  L+ +E+DR +D D + R ++   
Sbjct: 179 GMGGQVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNA 235

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIAS
Sbjct: 236 EANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIAS 294

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHV++P+DLLPE+QGR P+RV L +L + DF  IL+ T ++L+ QY+ L+ TE ++L 
Sbjct: 295 GAFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLH 354

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F ED I  LA +A  +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV  
Sbjct: 355 FEEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDE 414

Query: 422 HIGDFPSETDMYHFIL 437
            +      +D+  +IL
Sbjct: 415 KLSGIAKNSDLSKYIL 430


>gi|254369290|ref|ZP_04985302.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122240|gb|EDO66380.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 455

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/457 (51%), Positives = 313/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA T   I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVTPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|237807244|ref|YP_002891684.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis
           DSM 9187]
 gi|259491383|sp|C4L9W9|HSLU_TOLAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|237499505|gb|ACQ92098.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis
           DSM 9187]
          Length = 443

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ +AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQAEAKRAVAIALRNRWRRMQLSNELRQEVAPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+A+ ++RE   ++VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLTDMALKMMREQEMEKVRFRA 123

Query: 127 SINAEERILDALVG----------KTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+           K+ T ++TR++FRKKLR+GE+ DKEI+I+VA     
Sbjct: 124 HEAAEERVLDVLLPPARSNWGEAEKSETGTHTRQIFRKKLREGELDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   M +G   K ++ V+    +L+ +E+ RL++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQN-MSAGNTHKRKLKVKDALKQLVEEEAGRLLNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DEFDKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 KTIHAVENNGIVFIDEFDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV LK+L   DF  ILT+  ++L  QY+ LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELKNLTVDDFERILTEPNASLTEQYQALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FT + I ++A+ A  +N    +IGARRL TV+E+++EDIS+ A+D   +   ID
Sbjct: 362 EQVKIEFTAEGIRSIAEAAWQVNERTENIGARRLHTVLEKLMEDISYDAADNAGQLFSID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  ++G    + D+  FIL
Sbjct: 422 AEYVNRYLGALIEDEDLSRFIL 443


>gi|15804522|ref|NP_290562.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 EDL933]
 gi|15834112|ref|NP_312885.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131769|ref|NP_418366.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24115225|ref|NP_709735.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           2a str. 301]
 gi|30064776|ref|NP_838947.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           2a str. 2457T]
 gi|74314431|ref|YP_312850.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sonnei
           Ss046]
 gi|82546280|ref|YP_410227.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii
           Sb227]
 gi|89110098|ref|AP_003878.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. W3110]
 gi|110807792|ref|YP_691312.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           5 str. 8401]
 gi|157163406|ref|YP_001460724.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           HS]
 gi|168748769|ref|ZP_02773791.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755617|ref|ZP_02780624.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761683|ref|ZP_02786690.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768235|ref|ZP_02793242.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775231|ref|ZP_02800238.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780850|ref|ZP_02805857.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786789|ref|ZP_02811796.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC869]
 gi|168799486|ref|ZP_02824493.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC508]
 gi|170022058|ref|YP_001727012.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           ATCC 8739]
 gi|170083401|ref|YP_001732721.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188494098|ref|ZP_03001368.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           53638]
 gi|193068001|ref|ZP_03048966.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E110019]
 gi|194433247|ref|ZP_03065528.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1012]
 gi|194438349|ref|ZP_03070440.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           101-1]
 gi|195937575|ref|ZP_03082957.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809015|ref|ZP_03251352.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813147|ref|ZP_03254476.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819441|ref|ZP_03259761.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4042]
 gi|217325487|ref|ZP_03441571.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. TW14588]
 gi|238902997|ref|YP_002928793.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli BW2952]
 gi|253775430|ref|YP_003038261.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039192|ref|ZP_04873242.1| heat shock protein hslU [Escherichia sp. 1_1_43]
 gi|254163881|ref|YP_003046989.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli B
           str. REL606]
 gi|254795933|ref|YP_003080770.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021576|ref|ZP_05435441.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sp. D9]
 gi|256026031|ref|ZP_05439896.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia sp.
           4_1_40B]
 gi|260857668|ref|YP_003231559.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O26:H11 str. 11368]
 gi|260870650|ref|YP_003237052.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O111:H- str. 11128]
 gi|261223565|ref|ZP_05937846.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257327|ref|ZP_05949860.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285346|ref|YP_003502164.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli O55:H7 str. CB9615]
 gi|293417436|ref|ZP_06660060.1| heat shock protein HslVU [Escherichia coli B185]
 gi|300906259|ref|ZP_07123968.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           84-1]
 gi|300919129|ref|ZP_07135666.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           115-1]
 gi|300931627|ref|ZP_07146937.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           187-1]
 gi|300948289|ref|ZP_07162404.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           116-1]
 gi|301024060|ref|ZP_07187775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           196-1]
 gi|301303409|ref|ZP_07209533.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           124-1]
 gi|307140629|ref|ZP_07499985.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           H736]
 gi|312971781|ref|ZP_07785955.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1827-70]
 gi|331644669|ref|ZP_08345788.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H736]
 gi|331655629|ref|ZP_08356621.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M718]
 gi|332282817|ref|ZP_08395230.1| heat shock protein HslVU [Shigella sp. D9]
 gi|62288339|sp|P0A6H5|HSLU_ECOLI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62288340|sp|P0A6H6|HSLU_ECO57 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62288341|sp|P0A6H7|HSLU_SHIFL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123342247|sp|Q0SY58|HSLU_SHIF8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123769360|sp|Q31U59|HSLU_SHIBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123773413|sp|Q3YV47|HSLU_SHISS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|167017226|sp|A8A737|HSLU_ECOHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|189043910|sp|B1IVE8|HSLU_ECOLC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|229486075|sp|B1XB97|HSLU_ECODH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|259491371|sp|C5A098|HSLU_ECOBW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|13399751|pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399752|pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399757|pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399758|pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399759|pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399760|pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|73535732|pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
           Crystal Containing Lattice Translocation Defects
 gi|73535733|pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
           Crystal Containing Lattice Translocation Defects
 gi|12518837|gb|AAG59126.1|AE005624_2 heat shock protein hslVU, ATPase subunit, homologous to chaperones
           [Escherichia coli O157:H7 str. EDL933]
 gi|305034|gb|AAB03063.1| matches PS00017: ATP_GTP_A; similar to Pasteurella haemolytica
           hypoth. protein ORF1; heat shock induced [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1790366|gb|AAC76913.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13364334|dbj|BAB38281.1| heat shock protein HslU [Escherichia coli O157:H7 str. Sakai]
 gi|24054510|gb|AAN45442.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str.
           301]
 gi|30043036|gb|AAP18758.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str.
           2457T]
 gi|73857908|gb|AAZ90615.1| heat shock protein hslVU ATPase subunit [Shigella sonnei Ss046]
 gi|81247691|gb|ABB68399.1| heat shock protein hslVU, ATPase subunit [Shigella boydii Sb227]
 gi|85676129|dbj|BAE77379.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K12 substr. W3110]
 gi|110617340|gb|ABF06007.1| ATP-dependent protease ATP-binding subunit [Shigella flexneri 5
           str. 8401]
 gi|157069086|gb|ABV08341.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli HS]
 gi|169756986|gb|ACA79685.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           ATCC 8739]
 gi|169891236|gb|ACB04943.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187769191|gb|EDU33035.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016819|gb|EDU54941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489297|gb|EDU64400.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           53638]
 gi|189001486|gb|EDU70472.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357218|gb|EDU75637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362747|gb|EDU81166.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367913|gb|EDU86329.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373351|gb|EDU91767.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC869]
 gi|189378023|gb|EDU96439.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC508]
 gi|192958621|gb|EDV89059.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E110019]
 gi|194418531|gb|EDX34619.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1012]
 gi|194422786|gb|EDX38782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           101-1]
 gi|208728816|gb|EDZ78417.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734424|gb|EDZ83111.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739564|gb|EDZ87246.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4042]
 gi|209752248|gb|ACI74431.1| heat shock protein HslV [Escherichia coli]
 gi|209752250|gb|ACI74432.1| heat shock protein HslV [Escherichia coli]
 gi|209752252|gb|ACI74433.1| heat shock protein HslV [Escherichia coli]
 gi|209752254|gb|ACI74434.1| heat shock protein HslV [Escherichia coli]
 gi|209752256|gb|ACI74435.1| heat shock protein HslV [Escherichia coli]
 gi|217321708|gb|EEC30132.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. TW14588]
 gi|226838628|gb|EEH70657.1| heat shock protein hslU [Escherichia sp. 1_1_43]
 gi|238861792|gb|ACR63790.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli BW2952]
 gi|242379467|emb|CAQ34282.1| ATPase component of the HslVU protease, subunit of HslU hexamer and
           HslVU protease [Escherichia coli BL21(DE3)]
 gi|253326474|gb|ACT31076.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975782|gb|ACT41453.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str.
           REL606]
 gi|253979939|gb|ACT45609.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           BL21(DE3)]
 gi|254595333|gb|ACT74694.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O157:H7 str. TW14359]
 gi|257756317|dbj|BAI27819.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O26:H11 str. 11368]
 gi|257767006|dbj|BAI38501.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O111:H- str. 11128]
 gi|260451232|gb|ACX41654.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           DH1]
 gi|281603325|gb|ADA76309.1| ATP-dependent hsl protease ATP-binding subunit hslU [Shigella
           flexneri 2002017]
 gi|290765219|gb|ADD59180.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli O55:H7 str. CB9615]
 gi|291430956|gb|EFF03952.1| heat shock protein HslVU [Escherichia coli B185]
 gi|299880564|gb|EFI88775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           196-1]
 gi|300401940|gb|EFJ85478.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           84-1]
 gi|300413763|gb|EFJ97073.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           115-1]
 gi|300452190|gb|EFK15810.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           116-1]
 gi|300460591|gb|EFK24084.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           187-1]
 gi|300841363|gb|EFK69123.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           124-1]
 gi|309704356|emb|CBJ03705.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Escherichia coli ETEC H10407]
 gi|310334158|gb|EFQ00363.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1827-70]
 gi|313648818|gb|EFS13257.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 2a
           str. 2457T]
 gi|315138497|dbj|BAJ45656.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli DH1]
 gi|315254304|gb|EFU34272.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           85-1]
 gi|315617726|gb|EFU98331.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           3431]
 gi|320175373|gb|EFW50476.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           dysenteriae CDC 74-1112]
 gi|320180702|gb|EFW55628.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           boydii ATCC 9905]
 gi|320184937|gb|EFW59721.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           flexneri CDC 796-83]
 gi|320190969|gb|EFW65619.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. EC1212]
 gi|320639183|gb|EFX08814.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. G5101]
 gi|320644571|gb|EFX13628.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H- str. 493-89]
 gi|320649894|gb|EFX18406.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H- str. H 2687]
 gi|320655295|gb|EFX23241.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660922|gb|EFX28368.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665987|gb|EFX33010.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153992|gb|EFZ40201.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           EPECa14]
 gi|323167400|gb|EFZ53108.1| heat shock protein HslVU, ATPase subunit HslU [Shigella sonnei 53G]
 gi|323174331|gb|EFZ59957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           LT-68]
 gi|323177952|gb|EFZ63536.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1180]
 gi|323934421|gb|EGB30834.1| heat shock protein HslVU [Escherichia coli E1520]
 gi|323939013|gb|EGB35231.1| heat shock protein HslVU [Escherichia coli E482]
 gi|323959300|gb|EGB54961.1| heat shock protein HslVU [Escherichia coli H489]
 gi|323969683|gb|EGB64967.1| heat shock protein HslVU [Escherichia coli TA007]
 gi|326338056|gb|EGD61886.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. 1044]
 gi|326342649|gb|EGD66422.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. 1125]
 gi|331036131|gb|EGI08367.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H736]
 gi|331046730|gb|EGI18815.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M718]
 gi|332084172|gb|EGI89377.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii
           5216-82]
 gi|332085149|gb|EGI90327.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           155-74]
 gi|332088251|gb|EGI93371.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii
           3594-74]
 gi|332105169|gb|EGJ08515.1| heat shock protein HslVU [Shigella sp. D9]
 gi|332345927|gb|AEE59261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           UMNK88]
 gi|332751579|gb|EGJ81978.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           4343-70]
 gi|332751852|gb|EGJ82249.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-671]
 gi|332752607|gb|EGJ82993.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           2747-71]
 gi|332764529|gb|EGJ94761.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           2930-71]
 gi|332997992|gb|EGK17598.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           VA-6]
 gi|332998605|gb|EGK18202.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-218]
 gi|333013855|gb|EGK33217.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-304]
          Length = 443

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|300721288|ref|YP_003710559.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297627776|emb|CBJ88307.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus nematophila ATCC 19061]
          Length = 443

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDENLRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T T    S+TR+ FRKKLR+G++ DKEI+IEV+     
Sbjct: 124 EELAEERILDVLLPPAKNNWGQTETQSEPSSTRQAFRKKLREGQLDDKEIEIEVSAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  R+K  ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNMAGQ-RQKSRKLKIKDAFKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D I  +A+ A  +N T  +IGARRL TV+ER++EDISF AS+ Q + V I+
Sbjct: 362 EGMNIEFTADGIRKIAEAAWQVNETTENIGARRLHTVLERMMEDISFDASERQGQFVEIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           ++YV+ ++ +  +  D+  FIL
Sbjct: 422 SDYVKENLDELVANEDLSRFIL 443


>gi|285019333|ref|YP_003377044.1| molecular chaperone and ATPase component of hsluv protease
           [Xanthomonas albilineans GPE PC73]
 gi|283474551|emb|CBA17052.1| probable molecular chaperone and atpase component of hsluv protease
           protein [Xanthomonas albilineans]
          Length = 458

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/454 (50%), Positives = 315/454 (69%), Gaps = 24/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP  +RDE+MPKNIL++GPTG
Sbjct: 9   SATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPDAMRDEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI+RDL D A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIVRDLADTAVKLYREQAKTRVR 128

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AEERILDAL+ + +                  S+TR  FR+ L  GE+ ++EI+
Sbjct: 129 TQAEERAEERILDALLPRRSVGIGFDPDAVRQEPSAQDSDTRSKFRRMLHAGELDEREIE 188

Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++V  + S DI     PG   +G   L  +FS  +G G+ +  R++++   P L+ +E+ 
Sbjct: 189 LDVPINVSMDI--MTPPGMEEMG-QQLRHMFSN-LGGGKSQSRRLTIKAARPLLIEEEAG 244

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           +L++ D V   +I   E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+
Sbjct: 245 KLVNEDDVRAAAIDACEQHGIVFIDEIDKVAKRGEAGASGGDVSREGVQRDLLPLVEGSN 304

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++
Sbjct: 305 VSTKYGTVRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELSALSKDDFIRILTEPKA 364

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY+ L+ TEG+ L F++D+I  LA++A  +N    +IGARRL TV+ER+L+ +S+ 
Sbjct: 365 ALIKQYEALLLTEGVSLSFSDDAIVRLAEIAFLVNERQENIGARRLHTVLERLLDSLSYE 424

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A D   ++V +DA YV   + +   + D+  +IL
Sbjct: 425 APDRDGESVTVDAGYVDARLSELVQDPDLSRYIL 458


>gi|22124212|ref|NP_667635.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           KIM 10]
 gi|45439970|ref|NP_991509.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594455|ref|YP_068646.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806253|ref|YP_650169.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Antiqua]
 gi|108813908|ref|YP_649675.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Nepal516]
 gi|145601043|ref|YP_001165119.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Pestoides F]
 gi|150260792|ref|ZP_01917520.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125]
 gi|153950076|ref|YP_001399112.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418383|ref|YP_001604748.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Angola]
 gi|165928396|ref|ZP_02224228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936245|ref|ZP_02224814.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011445|ref|ZP_02232343.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213726|ref|ZP_02239761.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402503|ref|ZP_02307957.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419213|ref|ZP_02310966.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425891|ref|ZP_02317644.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170026311|ref|YP_001722816.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis YPIII]
 gi|186893443|ref|YP_001870555.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927320|ref|YP_002345195.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           CO92]
 gi|229836219|ref|ZP_04456387.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Pestoides A]
 gi|229839958|ref|ZP_04460117.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842040|ref|ZP_04462195.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904434|ref|ZP_04519545.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Nepal516]
 gi|270488704|ref|ZP_06205778.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM
           D27]
 gi|294502201|ref|YP_003566263.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|21759180|sp|Q8ZJJ5|HSLU_YERPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286788|sp|Q66G85|HSLU_YERPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123073081|sp|Q1CD55|HSLU_YERPN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123246016|sp|Q1CBE8|HSLU_YERPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221618|sp|A4TS84|HSLU_YERPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166879495|sp|A7FCY4|HSLU_YERP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238687319|sp|A9R6C7|HSLU_YERPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238688484|sp|B1JQ76|HSLU_YERPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238691341|sp|B2JZC5|HSLU_YERPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21956973|gb|AAM83886.1|AE013628_9 heat shock protein, ATPase subunit [Yersinia pestis KIM 10]
 gi|45434825|gb|AAS60386.1| ATP-binding heat shock protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51587737|emb|CAH19337.1| ATP-binding heat shock protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777556|gb|ABG20075.1| ATP-binding heat shock protein [Yersinia pestis Nepal516]
 gi|108778166|gb|ABG12224.1| ATP-binding heat shock protein [Yersinia pestis Antiqua]
 gi|115345931|emb|CAL18793.1| ATP-binding heat shock protein [Yersinia pestis CO92]
 gi|145212739|gb|ABP42146.1| ATP-binding heat shock protein [Yersinia pestis Pestoides F]
 gi|149290200|gb|EDM40277.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125]
 gi|152961571|gb|ABS49032.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351198|gb|ABX85146.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           Angola]
 gi|165915859|gb|EDR34467.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919578|gb|EDR36911.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989591|gb|EDR41892.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205128|gb|EDR49608.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963207|gb|EDR59228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048119|gb|EDR59527.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055039|gb|EDR64838.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752845|gb|ACA70363.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis YPIII]
 gi|186696469|gb|ACC87098.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678552|gb|EEO74657.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Nepal516]
 gi|229690350|gb|EEO82404.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696324|gb|EEO86371.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706667|gb|EEO92673.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Pestoides A]
 gi|262360280|gb|ACY57001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262364227|gb|ACY60784.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270337208|gb|EFA47985.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM
           D27]
 gi|294352660|gb|ADE63001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|320013458|gb|ADV97029.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 443

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEALKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTIEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESSGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443


>gi|238794365|ref|ZP_04637976.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           intermedia ATCC 29909]
 gi|238726266|gb|EEQ17809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           intermedia ATCC 29909]
          Length = 443

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E  +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KVKIKDAFKLLIEEEGAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVAFTPEGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443


>gi|261254140|ref|ZP_05946713.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           orientalis CIP 102891]
 gi|260937531|gb|EEX93520.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           orientalis CIP 102891]
          Length = 444

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+               ++SNTR+VFRKKLR+G++ DKEI+I+VA    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIEIDVAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +KK+        +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEEVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV+  +GD   + D+  FIL
Sbjct: 422 DAEYVKAKLGDTIEDEDLSRFIL 444


>gi|308188608|ref|YP_003932739.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans
           C9-1]
 gi|308059118|gb|ADO11290.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans
           C9-1]
          Length = 445

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/444 (50%), Positives = 312/444 (70%), Gaps = 15/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A ++  
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASAPG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293
           D+I  VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF+ ILT+  +++ +QYK LM
Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKALM 361

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTE+ I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++V 
Sbjct: 362 NTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESVT 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV  H+ +  ++ D+  FIL
Sbjct: 422 IDADYVGKHLDELVADEDLSRFIL 445


>gi|238764479|ref|ZP_04625427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           kristensenii ATCC 33638]
 gi|238697291|gb|EEP90060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           kristensenii ATCC 33638]
          Length = 443

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++ +  L+ +E  +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEGAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+ +  ++ D+  FIL
Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443


>gi|307824296|ref|ZP_07654522.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter
           tundripaludum SV96]
 gi|307734676|gb|EFO05527.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter
           tundripaludum SV96]
          Length = 439

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/439 (51%), Positives = 308/439 (70%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIVSELD++I+GQ +AKRAVAIALR+RWRRQQ+   LR+E+ PKNIL++GPTGVG
Sbjct: 3   QMTPKEIVSELDKHIVGQANAKRAVAIALRDRWRRQQVDPALREEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDLVD A+ + R    D+V  +
Sbjct: 63  KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLVDTAVKMTRTIEMDKVENK 122

Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AE+RILD L+ +           +TR+  RKKLR+G++ DKEI+I++      +  
Sbjct: 123 AFDAAEDRILDILLPRANGGMLSDTEESTRQKMRKKLREGDLDDKEIEIDMHLAPMGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +F   +GSG+ +  +M + K    L  +E+ +L++ D +   ++
Sbjct: 183 MAPPGMEEM-TSQLQGMFQN-LGSGKTRSRKMKINKALKVLQDEEASKLVNEDDIRLRAV 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VE  GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG++VSTKYGSI TDHILF
Sbjct: 241 ESVEQNGIVFLDEIDKICKRSELGGGEVSREGVQRDLLPLVEGTTVSTKYGSIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DL+PE+QGRFP+RV L +L+  DF  ILT+ +++L  QY  L+ TEG+
Sbjct: 301 IASGAFHLTKPSDLIPELQGRFPIRVELDALSADDFVRILTEPDASLTEQYTALLGTEGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L F+ED I  +A+    +N T  +IGARRL TV+ER+LEDIS++A +L    +VIDA Y
Sbjct: 361 SLSFSEDGIKRIAEFGWQVNETTENIGARRLHTVLERLLEDISYNAPELIGNNIVIDAAY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+ +F  + D+  +IL
Sbjct: 421 VNDHLAEFVEDEDLSRYIL 439


>gi|197287029|ref|YP_002152901.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227354726|ref|ZP_03839144.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|238690078|sp|B4F171|HSLU_PROMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|194684516|emb|CAR46300.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227165169|gb|EEI49997.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 446

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/445 (50%), Positives = 309/445 (69%), Gaps = 16/445 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREI SELDR+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTATS-------------NTREVFRKKLRDGEISDKEIDIEVADTS 173
              AEERILD L+     +               R+ FRKKLR+G++ DKEI+IE+A T 
Sbjct: 124 EEMAEERILDVLIPPAKNNWGVTESASSSEPSAARQAFRKKLREGQLDDKEIEIELAATP 183

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F  + G  +K + +M +++ +  ++ +E+ +L++ + +
Sbjct: 184 MGVEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKEAFKLIVEEEAAKLVNPEEL 241

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            + +I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + 
Sbjct: 242 KQQAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ L
Sbjct: 302 TDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYQAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ ++F++D I  +A+ A  +N T  +IGARRL TV+ER++E+IS+ AS+ Q +T+
Sbjct: 362 MATEGVSINFSQDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGETI 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +IDAEYV+ H+ +  ++ D+  FIL
Sbjct: 422 LIDAEYVKQHLDELVADEDLSRFIL 446


>gi|89902204|ref|YP_524675.1| ATP-dependent protease ATP-binding subunit HslU [Rhodoferax
           ferrireducens T118]
 gi|89346941|gb|ABD71144.1| heat shock protein HslVU, ATPase subunit HslU [Rhodoferax
           ferrireducens T118]
          Length = 440

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/442 (48%), Positives = 315/442 (71%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQQ AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVFELDKHIVGQQQAKRAVAIALRNRWRRQQVEPGLRAEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+   R +   +VR +A
Sbjct: 61  TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLADIAVKQTRVAEMKKVRSRA 120

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+R+LD L+                S  R+ FRKKLR+G+++D+EI+I++A ++  
Sbjct: 121 EDAAEDRVLDVLIPPPRGDFGVVQNMEPESIARQTFRKKLREGQLADQEIEIDLAQSAPQ 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F + MG  +++  ++ + +    L+ +E+ +L++ + +  
Sbjct: 181 LEIMGPPGMEEM-TEQLRGMFGQ-MGQQKRQTRKLKIPEALKLLVEEEAAKLVNEEEIRM 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++ M+E  GIVF+DE DK+ +R  GNG  VSR+GVQRDLLPLVEG++VSTKYG + TDH
Sbjct: 239 QALHMLEQNGIVFIDEIDKVTSRAEGNGAEVSRQGVQRDLLPLVEGTTVSTKYGMVKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ T
Sbjct: 299 ILFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFVAILTQTAASLVKQYQALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F ++ I  LA +A ++N    +IGARRL TVMER+L+++SF A++L  +T+ +D
Sbjct: 359 ENVHIEFLDEGITRLAHIAFDVNERTENIGARRLSTVMERLLDEVSFDAANLGGQTIHVD 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  +IL
Sbjct: 419 AAYVQARLGELSQDEDLSRYIL 440


>gi|332678290|gb|AEE87419.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella
           cf. novicida Fx1]
          Length = 455

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/457 (50%), Positives = 314/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKKIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|254508172|ref|ZP_05120297.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus 16]
 gi|219548894|gb|EED25894.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus 16]
          Length = 444

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/443 (51%), Positives = 311/443 (70%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+               ++SNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +KK+        +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV+  +GD   + D+  FIL
Sbjct: 422 DADYVKAKLGDTIEDEDLSRFIL 444


>gi|238786105|ref|ZP_04630061.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           bercovieri ATCC 43970]
 gi|238798294|ref|ZP_04641778.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           mollaretii ATCC 43969]
 gi|238712982|gb|EEQ05038.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           bercovieri ATCC 43970]
 gi|238717841|gb|EEQ09673.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           mollaretii ATCC 43969]
          Length = 443

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A +   
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E  +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKDAFKLLIEEEGAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESHGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+ +  ++ D+  FIL
Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443


>gi|323494457|ref|ZP_08099563.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           brasiliensis LMG 20546]
 gi|323311280|gb|EGA64438.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           brasiliensis LMG 20546]
          Length = 444

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+                +SNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +KK+        +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV+  +GD   + D+  FIL
Sbjct: 422 DAEYVKAKLGDTIEDEDLSRFIL 444


>gi|300954660|ref|ZP_07167101.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           175-1]
 gi|300318371|gb|EFJ68155.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           175-1]
          Length = 443

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLPDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|238789597|ref|ZP_04633381.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           frederiksenii ATCC 33641]
 gi|238722350|gb|EEQ14006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           frederiksenii ATCC 33641]
          Length = 443

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E  +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKDAFKLLIEEEGAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F+ + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ ID
Sbjct: 362 EGVTVEFSREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443


>gi|212712511|ref|ZP_03320639.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM
           30120]
 gi|212684727|gb|EEB44255.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM
           30120]
          Length = 444

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/443 (50%), Positives = 305/443 (68%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNEHLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEV+     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEPVDEQSPARQAFRKKLREGQLDDKEIEIEVSAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + TD
Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPNASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+   +++ I
Sbjct: 362 TEGVSIEFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASERDGQSITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYVR H+ +  ++ D+  FIL
Sbjct: 422 DAEYVRQHLDELVADEDLSRFIL 444


>gi|300114765|ref|YP_003761340.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           watsonii C-113]
 gi|299540702|gb|ADJ29019.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           watsonii C-113]
          Length = 447

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 308/440 (70%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV EL+++IIGQ  AKRAVA+ALRNRWRR+Q+  +LR+E+ PKNIL++GPTGVGK
Sbjct: 10  LTPRQIVQELNKHIIGQTAAKRAVAVALRNRWRRRQVNEELRNEITPKNILMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE    +VR QA
Sbjct: 70  TEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQA 129

Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+              SNTR+ FRK LR+G++ D+EI+IE+A  S  + 
Sbjct: 130 EDRAEERILDALLPTARAAPHGSMDEQSNTRQKFRKMLREGKLDDREIEIELAAVSMGVE 189

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F  + G+ R +  R+ V++ +  L  +E+ +LI+ + +   S
Sbjct: 190 IMAPPGMEEM-TSQLQNMFQNLGGT-RTRTRRLRVREAFKLLTEEEAGKLINDEDLKAQS 247

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTKYG + TDHIL
Sbjct: 248 LENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSTVSTKYGMVRTDHIL 307

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QY  L+KTEG
Sbjct: 308 FIASGAFHLAKPSDLIPEMQGRLPIRVELDALSVDDFVRILTEPNASLTAQYIALLKTEG 367

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L FTE+ I  +A +A  +N    +IGARRL TVMER+LE +SF A +   + V+IDA 
Sbjct: 368 ISLHFTEEGIARIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHASRKVIIDAA 427

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   + D   + D+  +IL
Sbjct: 428 YVDAQLADLAQDEDLSRYIL 447


>gi|260595965|ref|YP_003208536.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter
           turicensis z3032]
 gi|260215142|emb|CBA26936.1| ATP-dependent hsl protease ATP-binding subunit hslU [Cronobacter
           turicensis z3032]
          Length = 444

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/444 (51%), Positives = 308/444 (69%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            +   S  R+ FRKKLR+GE+ DKEI+I +A     
Sbjct: 124 EEMAEERILDALIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            +I+ VE +GIVF+DE DKI  R  GN  G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKR-GGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTADDFERILTEPNASVTVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ 
Sbjct: 361 ETEGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV  H+    ++ D+  FIL
Sbjct: 421 IDADYVSKHLDALVADEDLSRFIL 444


>gi|15604188|ref|NP_220703.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           prowazekii str. Madrid E]
 gi|11133244|sp|Q9ZDK8|HSLU_RICPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|3860880|emb|CAA14780.1| HEAT SHOCK PROTEIN HSLU (hslU) [Rickettsia prowazekii]
 gi|292571921|gb|ADE29836.1| Heat shock protein HslVU,ATPase subunit HslU [Rickettsia prowazekii
           Rp22]
          Length = 450

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/438 (49%), Positives = 317/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ  AK+AVAIALRNR+RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   +  V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIAVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F+ K+ +GE+ D EI+I VADT+      F+IP 
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKAKVLNGELDDTEIEISVADTTPVGGGGFEIPC 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +G+ + K  +M ++     ++ +ES++LID + + + +I + 
Sbjct: 193 IPGASMGVLNLGDMIGRALGNSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  +       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTSNAGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L  L K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTEEVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K ++ID ++V
Sbjct: 373 LEFTDAAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|83648621|ref|YP_437056.1| ATP-dependent protease ATP-binding subunit HslU [Hahella chejuensis
           KCTC 2396]
 gi|123753515|sp|Q2S9P3|HSLU_HAHCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83636664|gb|ABC32631.1| heat shock protein HslVU, ATPase subunit HslU [Hahella chejuensis
           KCTC 2396]
          Length = 442

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AKRAVAIALRNRWRR Q+   LR+E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVQELDKHIIGQDSAKRAVAIALRNRWRRMQIDEGLREEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+AI ++RE    +V  +
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLADMAIKLLREKEMTKVENR 122

Query: 126 ASINAEERILDALVGKTATSNT----------REVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+    + N+          R+VFRKKLR+G + DKEIDIE+  T   
Sbjct: 123 ALDAAEERILDALLPPARSFNSDAPVEKESAARQVFRKKLREGTLDDKEIDIEIKATPVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +FS + G  RK+  RM V +   ++  +E+ +L++ + + +
Sbjct: 183 VEIMAPPGMEEM-TSQLQSMFSNMSGD-RKRTKRMKVAEAMKKVKDEEAAKLVNEEEIKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +++ VE  GIVF+DE DK+  R   +   VSREGVQRDLLPL+EG +VSTK+G + TDH
Sbjct: 241 RALRAVEENGIVFIDEIDKVAKRSETSSADVSREGVQRDLLPLIEGCTVSTKFGMLKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGR P+RV L +L+ SDF+ ILT+  ++L  QY  LMKT
Sbjct: 301 ILFIASGAFHLAKPSDLIPELQGRLPIRVELDALSPSDFQRILTEPNASLTEQYVALMKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F+E +I  +A++A  +N    +IGARRL TVME++LE++SF+A D    +  + 
Sbjct: 361 EGVDISFSEGAIQRIAEIAWKVNEKTENIGARRLHTVMEKLLEEVSFAAGDKIRDSFEVT 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV   +G+   + D+  +IL
Sbjct: 421 AEYVDKCLGELSEDEDLSRYIL 442


>gi|56476921|ref|YP_158510.1| ATP-dependent protease ATP-binding subunit HslU [Aromatoleum
           aromaticum EbN1]
 gi|62286724|sp|Q5P503|HSLU_AZOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56312964|emb|CAI07609.1| Heat shock protein chaperone [Aromatoleum aromaticum EbN1]
          Length = 442

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL ++A+   RE     VR++
Sbjct: 63  KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLAEIAVKDGRERAMKTVRDR 122

Query: 126 ASINAEERILDAL------VG----KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+R+LDAL      VG    +   S+TR+ FRK+LR+GE+ DKEIDIEVA  +  
Sbjct: 123 ALDAAEDRVLDALLPAARPVGLNEPEPVDSSTRQKFRKRLREGELDDKEIDIEVAAQAMT 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              F  PG   +    +  +F   +G G+KK  +M + +    L  +E+ RLI+ + V  
Sbjct: 183 AEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKVRKMKIGEALKALTDEEAARLINDEEVKA 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++++ VE  GIVFLDE DK+ +R  G G  VSR+GVQRDLLPLVEG+++STKYG I TDH
Sbjct: 241 EAVRAVEQNGIVFLDEIDKVASRSEGQGADVSRQGVQRDLLPLVEGTTISTKYGMIKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGR P+RV L+SL+  DF+ ILT T++ L+ QY+ L+ T
Sbjct: 301 ILFIASGAFHLAKPSDLIPELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G+ L+FT+D I  LA++A  +N    +IGARRL TVME++LE+ISF A  +    +++D
Sbjct: 361 DGVTLEFTDDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRIGLDKLLVD 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +       D+  ++L
Sbjct: 421 APYVDARLEILAQREDLARYVL 442


>gi|32035737|ref|ZP_00135613.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209199|ref|YP_001054424.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           pleuropneumoniae L20]
 gi|190151065|ref|YP_001969590.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249978|ref|ZP_07336180.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|166221456|sp|A3N333|HSLU_ACTP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238692357|sp|B3GYW2|HSLU_ACTP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126097991|gb|ABN74819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189916196|gb|ACE62448.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651041|gb|EFL81195.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 440

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQAALNDVVENEDLSRFIL 440


>gi|149189185|ref|ZP_01867472.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
 gi|148836939|gb|EDL53889.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
          Length = 444

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVSPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V  +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVTFRA 123

Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+               ++SNTR+VFRKKLR+G++ DKEIDIE A    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIDIETAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G   KKK ++ ++  +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQSMFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYIALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +AD A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEEVDVEFTEDGIQQIADAAWTVNETTENIGARRLHTVMERLMDEISFDATDKPGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D+ YV+  +G+F  + D+  FIL
Sbjct: 422 DSGYVKSKLGEFVEDEDLSRFIL 444


>gi|294340809|emb|CAZ89204.1| ATP-dependent hsl protease ATP-binding subunit hslU (Heat shock
           protein hslU) [Thiomonas sp. 3As]
          Length = 440

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/442 (50%), Positives = 313/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR++IGQ  AK+AVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDRFVIGQAKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+   + R +A
Sbjct: 61  TEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRTRA 120

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+   A S+           TR++ RK+LR+G++ +KEI+I++A   + 
Sbjct: 121 EDRAEDRILDVLLPAPADSSGHTPSVTENNPTRQMLRKRLREGQLDNKEIEIDLAVHPAS 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    +  +F+  +G  R+K  +++V++    L+ +E+ +L++ D +  
Sbjct: 181 VDIMGPPGMEDM-TEQIRSMFAN-LGQTRRKTRKVTVREAQKLLIDEEAAKLVNEDEIKA 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +++ VE  GIVFLDE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDH
Sbjct: 239 GALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T+++L  QY  L+ T
Sbjct: 299 ILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G+ ++FT D I  +A+VA  +N    +IGARRL TVMER+LE++SF A   Q  TV +D
Sbjct: 359 DGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVKVD 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A  V   +GD   + D+  ++L
Sbjct: 419 AAMVNERLGDIARDEDLSRYVL 440


>gi|85060147|ref|YP_455849.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|123766389|sp|Q2NQY1|HSLU_SODGM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|84780667|dbj|BAE75444.1| heat shock protein [Sodalis glossinidius str. 'morsitans']
          Length = 443

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YI+GQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDGYIVGQHNAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRFRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+                S+ R+ FRKKLR+G++ +KEI+I +A     
Sbjct: 124 EELAEERVLDVLIPPAKNNWGQPEESGEPSSARQNFRKKLREGQLDEKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFKNLAGQKQKPR-KIKIKEAMKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  RD  +G+ VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 KAIEAVEQHGIVFIDEIDKICKRDEVSGLDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPSASLTTQYIALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FTED I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   KT+ ID
Sbjct: 362 EGVSITFTEDGIKRIAEAAWQVNECTENIGARRLHTVLERLMEDISYDASEWNGKTISID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +  S+ D+  FIL
Sbjct: 422 ADYVHGHLDELVSDEDLSRFIL 443


>gi|208779388|ref|ZP_03246734.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida
           FTG]
 gi|254372953|ref|ZP_04988442.1| hypothetical protein FTCG_00524 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374404|ref|ZP_04989886.1| ATP-dependent protease [Francisella novicida GA99-3548]
 gi|151570680|gb|EDN36334.1| hypothetical protein FTCG_00524 [Francisella novicida GA99-3549]
 gi|151572124|gb|EDN37778.1| ATP-dependent protease [Francisella novicida GA99-3548]
 gi|208745188|gb|EDZ91486.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida
           FTG]
          Length = 455

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/457 (50%), Positives = 313/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|323144075|ref|ZP_08078718.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416151|gb|EFY06842.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei
           YIT 12066]
          Length = 442

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/443 (51%), Positives = 312/443 (70%), Gaps = 16/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR+IIGQ++AK++VAIALRNRWRR Q+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   LTPREIVSELDRFIIGQKEAKKSVAIALRNRWRRMQIDPKLRGEIFPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APFIKVE TK+TE+GYVG+ V+ IIRDLVDV + +V+E    + R +A
Sbjct: 64  TEIARRLASLANAPFIKVEATKYTEVGYVGKEVDSIIRDLVDVGMKLVKEQAFKKNRVRA 123

Query: 127 SINAEERILDALV--------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              AEERILDAL+         +   + TR++FRKKLR+ E+ D+EI+I VADT     +
Sbjct: 124 EDAAEERILDALLPPADNTPESEKENNPTRQIFRKKLREHELDDREIEIRVADTGP---S 180

Query: 179 FDIPGG-ASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           F+I GG A++  +N  L  LF   M + R    +M ++  + EL+ +E+++L   D +  
Sbjct: 181 FNIIGGNAAIEEVNNQLQSLFDN-MNANRTVVRKMKIKDAFKELVMEEAEKLTKKDDLKT 239

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           ++I + EN GIVF+DE DKI  +D     G VSR+GVQRDLLPL+EG  VSTKYG + TD
Sbjct: 240 EAINLTENNGIVFIDEIDKICGQDLNGSRGEVSRQGVQRDLLPLIEGCQVSTKYGMVRTD 299

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ L+ 
Sbjct: 300 HILFIASGAFQMSKPSDLIPELQGRLPIRVELKALTSEDFERILKEPHTSLTKQYEMLLA 359

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL T+ME++LE +SF A D   + VVI
Sbjct: 360 TEGVTIEFTDDAIKRIAEDAFTVNERTENIGARRLHTLMEKLLESVSFEAPDHAGQKVVI 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+G+     D+  +IL
Sbjct: 420 DAEYVDDHLGELVQNEDLSRYIL 442


>gi|268593396|ref|ZP_06127617.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri
           DSM 1131]
 gi|291311093|gb|EFE51546.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri
           DSM 1131]
          Length = 444

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/443 (51%), Positives = 306/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQNKAKRSVAIALRNRWRRMQLNEVLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEVA +   
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEPTDEHSPARQAFRKKLREGQLDDKEIEIEVAASPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + TD
Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPNASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF ASD   +T+ I
Sbjct: 362 TEGVNIEFTTDGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASDRNGQTIQI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 422 DADYVRQHLDELVADEDLSRFIL 444


>gi|62260988|gb|AAX77951.1| unknown protein [synthetic construct]
          Length = 490

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/459 (50%), Positives = 314/459 (68%), Gaps = 24/459 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +++T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++G
Sbjct: 25  LEMTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIG 84

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  ++
Sbjct: 85  PTGVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKE 144

Query: 121 EVREQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDG 158
           +V E+A+  AE+RILD L+    TS                       TRE+FRKK+++G
Sbjct: 145 KVTEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNG 204

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E+ DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++     
Sbjct: 205 ELDDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKL 262

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
              +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPL
Sbjct: 263 AQDEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPL 322

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL
Sbjct: 323 VEGSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRIL 382

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE
Sbjct: 383 REPDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLE 442

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ISF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 443 KISFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 481


>gi|307246664|ref|ZP_07528734.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248792|ref|ZP_07530805.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307253408|ref|ZP_07535279.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255649|ref|ZP_07537453.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260100|ref|ZP_07541811.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262228|ref|ZP_07543878.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264429|ref|ZP_07546015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306852364|gb|EFM84599.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854719|gb|EFM86909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859087|gb|EFM91129.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861326|gb|EFM93316.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865834|gb|EFM97711.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868102|gb|EFM99928.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870245|gb|EFN02003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 438

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQAALNDVVENEDLSRFIL 438


>gi|227113220|ref|ZP_03826876.1| ATP-dependent protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 443

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+       G++ +    S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQSESTQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KVKIKDAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V ID
Sbjct: 362 EGVNISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|284008945|emb|CBA75815.1| ATP-dependent Hsl protease, ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 455

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 302/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 16  MTPREIVNELDNHIIGQDKAKRSVAIALRNRWRRMQLDEALRQEVTPKNILMIGPTGVGK 75

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 76  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 135

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+GE+ DKEI+IEVA T   
Sbjct: 136 EELAEERILDVLLPPAKNNWGQPDPHVEPSTARQSFRKKLREGELDDKEIEIEVATTPVG 195

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G   K + +M +++ +  L+ +E+ +L++ + + +
Sbjct: 196 VEIMAPPGMEEM-TSQLQSMFQNLAGQKHKPR-KMKIKEAFKTLIEEEAAKLVNPEELKQ 253

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 254 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 313

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L +QYK LM T
Sbjct: 314 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFNRILTEPNASLTIQYKALMAT 373

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT + I  +A  A  +N    +IGARRL TV+ER++EDISF AS+   + + ID
Sbjct: 374 EGLNIEFTPEGIGKIAQAAWQVNEKTENIGARRLHTVLERLMEDISFDASERNGQNIKID 433

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +  ++ D+  FIL
Sbjct: 434 ADYVAKHLDELVADEDLSRFIL 455


>gi|262273450|ref|ZP_06051264.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia
           hollisae CIP 101886]
 gi|262222428|gb|EEY73739.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia
           hollisae CIP 101886]
          Length = 444

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/442 (52%), Positives = 306/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDRHIIGQNKAKRAVAIALRNRWRRMQLNEELRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-------GKT----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G++    A S TR+ FRKK+R+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLLPPPRDAWGQSDEPKADSATRQSFRKKIREGKLDDKEIEINLAAPQMS 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    KK +M ++        +E+ +L++ + +  
Sbjct: 184 MEIMAPPGMEEM-TSQLQSMFQNLGGGTTSKKRKMKLKDALKAATEEEAAKLVNHEELKE 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 QAIAAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L+ SDF+ ILT+  ++L  QY  LM T
Sbjct: 303 ILFIASGAFQVASPSDLIPELQGRLPIRVELEALSASDFKRILTEPNASLTEQYIALMGT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L FTED I+ +A+ A  +N    +IGARRL TVMER++++ISFSAS+   ++  ID
Sbjct: 363 EDVNLTFTEDGIEEIANAAWRVNEKTENIGARRLHTVMERLVDEISFSASERGGESFEID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYVR  + +   + D+  FIL
Sbjct: 423 AEYVRNCLEELVDDEDLSRFIL 444


>gi|317050064|ref|YP_004117712.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b]
 gi|316951681|gb|ADU71156.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b]
          Length = 443

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ + +A
Sbjct: 64  TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRIQAIEKNKYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEHTAEPSAARQSFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT+D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   +++ ID
Sbjct: 362 EGVNVDFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRNGESITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+    ++ D+  FIL
Sbjct: 422 AEYVGKHLDQLVADEDLSRFIL 443


>gi|301645122|ref|ZP_07245080.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           146-1]
 gi|301076549|gb|EFK91355.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           146-1]
          Length = 443

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A   N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQGNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|56707807|ref|YP_169703.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89256313|ref|YP_513675.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica LVS]
 gi|110670278|ref|YP_666835.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis FSC198]
 gi|115314758|ref|YP_763481.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134302010|ref|YP_001121979.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|156502382|ref|YP_001428447.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010172|ref|ZP_02275103.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187931847|ref|YP_001891832.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|254367645|ref|ZP_04983666.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. holarctica 257]
 gi|290953147|ref|ZP_06557768.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313675|ref|ZP_06804259.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica URFT1]
 gi|62286722|sp|Q5NGY9|HSLU_FRATT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122325223|sp|Q0BM40|HSLU_FRATO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122500777|sp|Q2A3M7|HSLU_FRATH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123359528|sp|Q14IE1|HSLU_FRAT1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221480|sp|A7NBY8|HSLU_FRATF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221482|sp|A4IY57|HSLU_FRATW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238691570|sp|B2SH45|HSLU_FRATM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56604299|emb|CAG45320.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|89144144|emb|CAJ79403.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. holarctica LVS]
 gi|110320611|emb|CAL08703.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115129657|gb|ABI82844.1| T01 family HslU component of HslUV peptidase (ClpY) [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134049787|gb|ABO46858.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134253456|gb|EBA52550.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. holarctica 257]
 gi|156252985|gb|ABU61491.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|187712756|gb|ACD31053.1| ATP-dependent protease HslVU, ATPase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|282158981|gb|ADA78372.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 455

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|309972350|gb|ADO95551.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2846]
          Length = 443

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/441 (53%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL          V     ++TR+ FRKKLR+G++ DKEI+I+V+   S  
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESNDNNSTRQTFRKKLREGQLDDKEIEIDVSAGVSMG 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + + 
Sbjct: 184 VEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQK 242

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 243 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 302

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM TE
Sbjct: 303 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 362

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV IDA
Sbjct: 363 GVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 422

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +G+     D+  FIL
Sbjct: 423 TYVADALGEVVENEDLSRFIL 443


>gi|224456876|ref|ZP_03665349.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370304|ref|ZP_04986309.1| ATP-dependent protease HslVU [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874621|ref|ZP_05247331.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568547|gb|EDN34201.1| ATP-dependent protease HslVU [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840620|gb|EET19056.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 455

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALKAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|82778893|ref|YP_405242.1| ATP-dependent protease ATP-binding subunit HslU [Shigella
           dysenteriae Sd197]
 gi|309783874|ref|ZP_07678519.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1617]
 gi|123728481|sp|Q32AA4|HSLU_SHIDS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|81243041|gb|ABB63751.1| heat shock protein hslVU, ATPase subunit [Shigella dysenteriae
           Sd197]
 gi|308928245|gb|EFP73707.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1617]
 gi|332998439|gb|EGK18037.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-272]
 gi|333014132|gb|EGK33489.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-227]
          Length = 443

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA AP IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPLIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+    ++ D+  FIL
Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443


>gi|118497588|ref|YP_898638.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. novicida U112]
 gi|195536286|ref|ZP_03079293.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. novicida FTE]
 gi|166221481|sp|A0Q6L9|HSLU_FRATN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|118423494|gb|ABK89884.1| ATP-dependent protease HslVU, ATPase subunit [Francisella novicida
           U112]
 gi|194372763|gb|EDX27474.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. novicida FTE]
          Length = 455

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK++ GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQKGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|237747301|ref|ZP_04577781.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229378652|gb|EEO28743.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 443

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/446 (50%), Positives = 311/446 (69%), Gaps = 16/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD++++GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPQEIVVELDKHVVGQSKAKRAVAVALRNRWRRQQVSEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I   RE    +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTREVEMKKVRS 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+R+L+ L+               ++  NTR+VFRKKLR+G + DKEI+IEVAD
Sbjct: 121 RAVDAAEDRVLNILIPPPRDFGFGSNEQPTSSGDNTRQVFRKKLREGSLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           ++  +     PG   +    +  +FS  +G GRKK  ++ ++     ++ +E+ +LI+ D
Sbjct: 181 SAPHMEIMAPPGMEEM-TEQIKSMFSG-LGGGRKKNRKVKIRDAIKLIIEEEAAKLINED 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + +I  VE  GIVFLDE DKI +R   +G  VSR GVQRDLLPLVEG++V+TKYG I
Sbjct: 239 ELRQKAIANVEQNGIVFLDEIDKIASRSEISGADVSRAGVQRDLLPLVEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +++P+DL+PE+QGRFP+RV L+SL+  DF  ILT TE++LI QYK 
Sbjct: 299 KTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELESLSIEDFEQILTSTEASLISQYKA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TEG+ L+F E++I  LA+++  +N    +IGARRL TVMER+LE+ISF+A +     
Sbjct: 359 LLATEGMQLEFNEEAIRRLAEISYTVNERTENIGARRLYTVMERLLEEISFTAVNYH-GV 417

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
             ID  YV   +    +  D+  ++L
Sbjct: 418 QTIDKNYVNERLEALSANEDLSRYVL 443


>gi|1074211|pir||D64072 probable heat shock protein HI0497 - Haemophilus influenzae
           (strain Rd KW20)
          Length = 466

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 21  KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 80

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 81  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 140

Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 141 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 200

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 201 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 259

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 260 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 319

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 320 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 379

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 380 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 439

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 440 TVNIDAAYVADALGEVVENEDLSRFIL 466


>gi|227327579|ref|ZP_03831603.1| ATP-dependent protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|253686572|ref|YP_003015762.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259491376|sp|C6DHM6|HSLU_PECCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|251753150|gb|ACT11226.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 443

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+       G+  +    S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQAESTPEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KIKIKDAFKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V ID
Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YVR H+ +  ++ D+  FIL
Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443


>gi|145632762|ref|ZP_01788496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145634507|ref|ZP_01790216.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|144986957|gb|EDJ93509.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145268052|gb|EDK08047.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
          Length = 444

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQVDAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGMSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|260580440|ref|ZP_05848268.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae RdAW]
 gi|260092782|gb|EEW76717.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae RdAW]
          Length = 454

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454


>gi|217969220|ref|YP_002354454.1| ATP-dependent protease ATP-binding subunit HslU [Thauera sp. MZ1T]
 gi|217506547|gb|ACK53558.1| heat shock protein HslVU, ATPase subunit HslU [Thauera sp. MZ1T]
          Length = 445

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/445 (52%), Positives = 312/445 (70%), Gaps = 15/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPPEIVSELDKHIVGQDKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+   RE     VR++
Sbjct: 63  KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLMEIAVKDGRERAMKSVRDR 122

Query: 126 ASINAEERILDAL------VGKTAT------SNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AE+R+LDAL      VG  A       S+TR+ FRKKLR+GE+ DKEI+IEVA  S
Sbjct: 123 ALDAAEDRVLDALLPPARPVGFNAEPEPAQDSSTRQKFRKKLREGELDDKEIEIEVAAPS 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                F  PG   +    +  +F   +G G+KK+ ++ +++    L  +E+ RLI+ + V
Sbjct: 183 MQAEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKQRKLQIREAMKLLADEEAARLINDEEV 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++++ VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG+++STKYG I T
Sbjct: 241 KLEAVRAVEQNGIVFLDEVDKIAARSDVQGADVSRQGVQRDLLPLVEGTTISTKYGMIKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T++ L  QY+ L+
Sbjct: 301 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFARILTSTDACLTRQYEALL 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTV 412
            T+G+ L+F +D I  LA++A  +N    +IGARRL TVME++LE++SF A     E+TV
Sbjct: 361 ATDGVKLEFADDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGRSSAEQTV 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           V+DA YV   +       D+  ++L
Sbjct: 421 VVDAAYVDSRLVMLAQREDLARYVL 445


>gi|119470416|ref|ZP_01613144.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
 gi|119446341|gb|EAW27617.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
          Length = 442

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLNDDLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE +  + + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVEVSIKMTREQQTKKFKHRA 123

Query: 127 SINAEERILDALV-------GKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDAL+       G+T     S+TR+ FRKKLR+G++ DKEI+I++A    ++
Sbjct: 124 EEAAEDRILDALLPPVKDQYGETQRDENSSTRQTFRKKLREGQLDDKEIEIDLAQVQPNV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH+
Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDHM 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+D++PE+QGR P+RV L++L  +DF+ ILT+  ++L  Q +EL+KTE
Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTANDFKRILTEPHASLTEQQRELLKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + + +++D+I+ +A  A  +N    +IGARRL TVME+++E+IS+ AS+    +VVIDA
Sbjct: 362 QVDVQYSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGSSVVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G    + D+  FIL
Sbjct: 422 AYVEKHLGALVEDEDLSRFIL 442


>gi|261346864|ref|ZP_05974508.1| ATP-dependent protease HslVU, ATPase subunit [Providencia
           rustigianii DSM 4541]
 gi|282565044|gb|EFB70579.1| ATP-dependent protease HslVU, ATPase subunit [Providencia
           rustigianii DSM 4541]
          Length = 444

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/443 (50%), Positives = 304/443 (68%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEV+     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEPVDEPSPARQAFRKKLREGQLDDKEIEIEVSAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + +M +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + TD
Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L+ L   DF  ILT+  S+L  QYK LM 
Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQPLTTEDFERILTEPNSSLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+ + +++ I
Sbjct: 362 TEGVNIDFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASEREGQSIQI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +AEYV  H+ +  ++ D+  FIL
Sbjct: 422 NAEYVSQHLDELVADEDLSRFIL 444


>gi|260779592|ref|ZP_05888482.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604401|gb|EEX30705.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 444

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/443 (50%), Positives = 314/443 (70%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-------GKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEER+LDAL+       G++     ++SNTR++FRKKLR+G++ DKEI+++VA    
Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQQDESSSNTRQIFRKKLREGKLDDKEIEVDVAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +KK+     +  +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKE-AFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D++YV+  +GD   + D+  FIL
Sbjct: 422 DSDYVKAKLGDTVEDEDLSRFIL 444


>gi|94676912|ref|YP_588629.1| ATP-dependent protease ATP-binding subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|122988121|sp|Q1LTT5|HSLU_BAUCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|94220062|gb|ABF14221.1| heat shock protein HslVU, ATPase subunit HslU [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 446

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/446 (50%), Positives = 306/446 (68%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV+ELD YIIGQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   HMTPSEIVNELDDYIIGQHNAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSMEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN--------------TREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEERILD L+ +   +N              TR+ FRKKLR+G++++KEI+I +A 
Sbjct: 123 AEERAEERILDVLIPQPTPNNWDKIEENNSSEPSSTRQHFRKKLREGQLNEKEIEINLAA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T   +     PG   +    L  +F  + G  +K + +M +++    L+ +E+ +L++ +
Sbjct: 183 TPIGVEIMAPPGMEEM-TNQLQSMFKNLAGQKQKSR-KMKIKEAMKLLIEEEAAKLVNQE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I+ VE  GIVF+DE DKI  R   +G  VS EGVQRDLLPLVEG +VSTK+G +
Sbjct: 241 KIKEKAIEAVEQNGIVFIDEIDKICKRGDVSGPDVSSEGVQRDLLPLVEGCTVSTKHGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TD+ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF+LILT+  ++L +QY  
Sbjct: 301 KTDYILFIASGAFQVASPSDLIPELQGRLPIRVELEALTPKDFQLILTEPNASLTMQYIA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LM TEG+ + FTED I  +A+ A  +N    +IGARRL T++E ++EDIS+ AS+   KT
Sbjct: 361 LMATEGVSISFTEDGIKRIAETAWQVNERTENIGARRLHTILELLMEDISYDASEWHGKT 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + IDA+YVR H+ D  S+ D   FIL
Sbjct: 421 ISIDADYVRSHLDDLVSDEDFSRFIL 446


>gi|145630324|ref|ZP_01786105.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|144984059|gb|EDJ91496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
          Length = 444

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas
           arsenicoxydans]
 gi|133740026|emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas
           arsenicoxydans]
          Length = 445

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/447 (50%), Positives = 315/447 (70%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD++++GQ +AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARA 120

Query: 127 SINAEERILDALV----------GKTATSN------TREVFRKKLRDGEISDKEIDIEVA 170
              AE+R++D LV            T+TS+      TR+ FRK+LR+G + D EI+IE+A
Sbjct: 121 EDAAEDRVIDILVPPARDFGFHPSATSTSDHSNDNATRQTFRKRLREGLLDDNEIEIELA 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           +    +     PG   +    +  +FS   G  RKK  ++ +++    L+ +E+ +L++ 
Sbjct: 181 EAGPTMEIMAPPGMEEM-TEQIKSMFSGA-GGNRKKARKIKIREAMKLLIEEEAGKLVNE 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D + + +I  VE  GIVFLDE DKI  R    G  VSR GVQRDLLPLVEG++V+TKYG 
Sbjct: 239 DELKQKAITNVEQNGIVFLDEIDKIANRSEQGGAEVSRAGVQRDLLPLVEGTTVNTKYGM 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L  QY+
Sbjct: 299 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTKQYQ 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ ++F +D I  +A++A ++N    +IGARRL TVME++LE+ISFSAS+  ++
Sbjct: 359 ALLATEGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASENPDQ 418

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ IDA YV   +G    + D+  ++L
Sbjct: 419 TLPIDAAYVNERLGALSVDEDLSRYVL 445


>gi|77165804|ref|YP_344329.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|254434376|ref|ZP_05047884.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani
           AFC27]
 gi|76884118|gb|ABA58799.1| Heat shock protein HslU [Nitrosococcus oceani ATCC 19707]
 gi|207090709|gb|EDZ67980.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani
           AFC27]
          Length = 447

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/440 (53%), Positives = 306/440 (69%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV ELD++IIGQ  AKRAVA+ALRNRWRR+Q+  +LR+E+ PKNIL++GPTGVGK
Sbjct: 10  LTPRQIVQELDKHIIGQTAAKRAVAVALRNRWRRRQVSEELRNEITPKNILMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE    +VR QA
Sbjct: 70  TEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQA 129

Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERILDAL+              SNTR+ FRK LR+G + D+EI+IE+A  S  + 
Sbjct: 130 EDRAEERILDALLPAARAAPHDTMDEESNTRQKFRKMLREGRLDDREIEIELAAVSMGVE 189

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   +G  R +  R+ V++ +  L  +E+ +LI+ + +   S
Sbjct: 190 IMAPPGMEEM-TSQLQNMFQN-LGGTRTRARRLRVREAFKLLTEEEAGKLINDEDLKARS 247

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTKYG + TDHIL
Sbjct: 248 LENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSAVSTKYGMVRTDHIL 307

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QY  L+KTEG
Sbjct: 308 FIASGAFHLAKPSDLIPEMQGRLPIRVELGALSVDDFVRILTEPNASLTEQYTALLKTEG 367

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L FTE+ I  +A +A  +N    +IGARRL TVMER+LE +SF A +   K V+IDA 
Sbjct: 368 ISLHFTEEGIAHIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHTSKKVIIDAA 427

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   + D   + D+  +IL
Sbjct: 428 YVDAQLADLARDEDLSRYIL 447


>gi|329122377|ref|ZP_08250964.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116]
 gi|327473659|gb|EGF19078.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116]
          Length = 454

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454


>gi|301063904|ref|ZP_07204379.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium
           NaphS2]
 gi|300441979|gb|EFK06269.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium
           NaphS2]
          Length = 468

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/457 (50%), Positives = 317/457 (69%), Gaps = 29/457 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD+YIIGQ  AKR+VAIALRNRWRRQQ+ A+LRDE+ PKNI+++GPTGVGK
Sbjct: 15  LTPREIVCELDKYIIGQDQAKRSVAIALRNRWRRQQVAAELRDEIAPKNIIMMGPTGVGK 74

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA +PF+KVE TKFTE+GYVGR+VE ++RDL ++A+N+ ++  ++ V  +A
Sbjct: 75  TEIARRLARLANSPFLKVEATKFTEVGYVGRDVESMVRDLSELAVNMAKKEEQEIVESRA 134

Query: 127 SINAEERILDALVGKT------------------------ATSNTREVFRKKLRDGEISD 162
           +  AEER+LD L+ K                            +TRE  R+ LR G++  
Sbjct: 135 AELAEERLLDILLPKKTEETQEEEEGERDRILEVVKSERDGMPSTREKLRRMLRSGKLDK 194

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           + +D+EV  +SS+I   +I   A +  +  N+ E+F   M   +KKK R+ + +    L 
Sbjct: 195 RYVDLEV--SSSNIPMVEIFSSAGMEEMEFNVKEIFGN-MFPQKKKKRRVKIPEAMEILF 251

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           ++ES RLIDMD V   +I++ E  GI+FLDE DK+   DS +G  VSREGVQRDLLP+VE
Sbjct: 252 QEESQRLIDMDKVVEKAIRITEQNGIIFLDELDKVAGNDSSHGPDVSREGVQRDLLPIVE 311

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V+TKYG I TDHILFIA+GAF+VS+P+DLLPE+QGRFP+RV L SL   DF  IL +
Sbjct: 312 GSTVATKYGMIKTDHILFIAAGAFNVSKPSDLLPELQGRFPIRVELDSLTTEDFVRILLE 371

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ LI QYK LM TE I L F ++S++A+A++A  +N  + +IGARRL T+ME+++++I
Sbjct: 372 PKNALITQYKALMATEEIELIFEDESVEAIAEMASKVNDRMENIGARRLHTIMEKLVDEI 431

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL EK+V ID  YV   + D   + ++  +IL
Sbjct: 432 SFDAPDLDEKSVTIDQPYVTEKLEDILEDENLSRYIL 468


>gi|16272441|ref|NP_438655.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae Rd KW20]
 gi|1170386|sp|P43773|HSLU_HAEIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|11513568|pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513569|pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513570|pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513571|pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513572|pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513573|pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513586|pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513587|pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513588|pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513589|pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513590|pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513591|pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513596|pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
 gi|21465932|pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465933|pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465934|pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465935|pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465936|pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465937|pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465950|pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465951|pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465952|pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465953|pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465954|pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465955|pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|1573474|gb|AAC22154.1| heat shock protein (hslU) [Haemophilus influenzae Rd KW20]
          Length = 444

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|322513249|ref|ZP_08066373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus
           ureae ATCC 25976]
 gi|322120956|gb|EFX92803.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus
           ureae ATCC 25976]
          Length = 440

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 311/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDSHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAENRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440


>gi|229844343|ref|ZP_04464483.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
 gi|229812592|gb|EEP48281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
          Length = 444

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +T+ ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|68249096|ref|YP_248208.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae 86-028NP]
 gi|145638588|ref|ZP_01794197.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|81336498|sp|Q4QN49|HSLU_HAEI8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68057295|gb|AAX87548.1| HslU, ATP-dependent chaperone of the HslUV protease [Haemophilus
           influenzae 86-028NP]
 gi|145272183|gb|EDK12091.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|309750090|gb|ADO80074.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2866]
          Length = 444

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|90413625|ref|ZP_01221615.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
 gi|90325398|gb|EAS41887.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
          Length = 443

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+                S+TR+ FRKKLR+G++ DK+I++++A     
Sbjct: 124 EELAEDRILDVLLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKDIEMDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ +M ++        +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEDM-TNQLQGMFQNLAGNTSKKR-KMKIKDAIKAATEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM T
Sbjct: 302 ILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + +DF+ED I+ +AD A  +N    +IGARRL TVMER++E++SF A+D  ++ +VID
Sbjct: 362 ESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +G+   + D+  FIL
Sbjct: 422 EAYVNERLGELVEDEDLSRFIL 443


>gi|260582238|ref|ZP_05850031.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae NT127]
 gi|260094606|gb|EEW78501.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae NT127]
          Length = 454

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRVRAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSAVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVSDALGEVVENEDLSRFIL 454


>gi|328675857|gb|AEB28532.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella
           cf. novicida 3523]
          Length = 455

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  + +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120

Query: 123 REQASINAEERILDALV----------------------GKTATSNTREVFRKKLRDGEI 160
            E+A+  AE+RILD L+                       K   + TRE+FRKK+++GE+
Sbjct: 121 TEKAAKLAEDRILDVLIPPARASESKVGFANEPAEDAVTKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG   +    L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +LI+ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLINEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYRVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L +K + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELADKNINITTDYVNQKLGNLVKNKDLTQYIL 455


>gi|257095384|ref|YP_003169025.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047908|gb|ACV37096.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 443

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPQEIVYELDKHIVGQGKAKKAVAIALRNRWRRAQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE +KFTE+GYVGR+VE IIRDLV++A+   RE     VR +A
Sbjct: 64  TEIARRLARLANAPFIKVEASKFTEVGYVGRDVETIIRDLVEIAVKSGREQAVKGVRARA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+             +  S TR+ FRK+LR+GE+ DKEI++EVA  S  
Sbjct: 124 EDAAEDRILDVLLPPARGNFFNDAQSSEDSATRQKFRKRLREGELDDKEIEVEVAAPSMQ 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              F  PG   +    +  +F  + G GRKK  ++ + +    L+ +E+ + ++ + V  
Sbjct: 184 AEIFAPPGMEEL-TAQIQGMFQNI-GGGRKKSRKLKISEARKFLIDEEAAKQVNDEEVKL 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++++ VE  GIVFLDE DKI +R   +G+ VSR+GVQRDLLPLVEG++VSTKYG I TDH
Sbjct: 242 EAVRNVEQNGIVFLDEIDKIASRSDTHGVDVSRQGVQRDLLPLVEGTTVSTKYGMIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  QY+ L+ T
Sbjct: 302 VLFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTKQYQALLAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ LDF  + +  LA++A ++N    +IGARRL TVMER+LE++SFSA       V ID
Sbjct: 362 EGVTLDFAAEGVKRLAEIAWSVNERTENIGARRLYTVMERLLEEVSFSAGKEASDLVAID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +     D+  ++L
Sbjct: 422 ATYVDSRLAELAENEDLSRYVL 443


>gi|165977172|ref|YP_001652765.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|238687516|sp|B0BSG4|HSLU_ACTPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|165877273|gb|ABY70321.1| ATP-dependent protease, ATPase subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 440

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440


>gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium
           sp. Marseille]
 gi|151281322|gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU
           [Janthinobacterium sp. Marseille]
          Length = 449

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/451 (50%), Positives = 312/451 (69%), Gaps = 20/451 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIVSELD++++GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RE    +VR 
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRA 120

Query: 125 QASINAEERILDALV---------------GKTATSN---TREVFRKKLRDGEISDKEID 166
           +A   AE+RI+D LV                 TA S    TR+ FRK+LR+G + D EI+
Sbjct: 121 RAEDAAEDRIIDILVPPARDFGFHPSSSTGSDTAPSTGNATRQTFRKRLREGTLDDTEIE 180

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           IE+A+    +     PG   +    +  +FS V G+ RKK  ++ +++    L+ +E+ +
Sbjct: 181 IELAEAGPSMEIMAPPGMEEM-TEQIKSMFSGVGGT-RKKTRKVKIKEAMKLLIEEEAGK 238

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ D + + +I  VE  GIVFLDE DKI  R    G  VSR GVQRDLLPLVEG++V+T
Sbjct: 239 LVNEDELKQKAITNVEQNGIVFLDEIDKIATRSENGGADVSRAGVQRDLLPLVEGTTVNT 298

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L 
Sbjct: 299 KYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLT 358

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ ++F  D I  +A++A ++N    +IGARRL TVME++LE+ISFSA+D
Sbjct: 359 RQYEALLGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSATD 418

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++T+VID  YV   +G      D+  ++L
Sbjct: 419 DPDQTLVIDGVYVDERLGALSVNEDLSRYVL 449


>gi|148825226|ref|YP_001289979.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae PittEE]
 gi|166221588|sp|A5U9Z5|HSLU_HAEIE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|148715386|gb|ABQ97596.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittEE]
          Length = 444

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFCVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|332524479|ref|ZP_08400688.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax
           benzoatilyticus JA2]
 gi|332107797|gb|EGJ09021.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax
           benzoatilyticus JA2]
          Length = 439

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 311/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MTHSMTPQEIVSELDRHIVGQNAAKRAVAIALRNRWRRQQVDEKLRGEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APF+KVE TKFTE+GYVG++V+ I+RDLV+VA+   RE      
Sbjct: 61  GVGKTEIARRLAKLADAPFVKVEATKFTEVGYVGKDVDTIVRDLVEVAVKQERERAIRRQ 120

Query: 123 REQASINAEERILDALVG-----KTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AEER+LDALV      + ++ NT R+V RK+LR+G ++DKEI+IEVAD    +
Sbjct: 121 RAKAEDAAEERVLDALVPPPRDLRESSDNTARQVMRKRLREGTLADKEIEIEVADPKPSL 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LFS+ MG G++   ++ + +   +L  +E+ +L++ + +   
Sbjct: 181 EILG-PQGMEEMAEQLKGLFSQ-MGQGKRNVRKLKIAEALEKLTEEEAGKLVNEEEIRAA 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++   E  GIVF+DE DK+ AR    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHI
Sbjct: 239 ALANAEGNGIVFIDEIDKVAARAEHGGADVSRQGVQRDLLPLVEGTAVSTKYGIVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TE
Sbjct: 299 LFIASGAFHLAKPSDLIPELQGRFPIRVELGSLSVDDFEAILTSTHASLVKQYQALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+   +++  +A +A ++N    +IGARRL TVMER+L+DISF A +   +TV +DA
Sbjct: 359 GVTLELAPEAVRRIAQIAYDVNERTENIGARRLATVMERLLDDISFDAPNRGGQTVTVDA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
             V   +G+   + D+  +IL
Sbjct: 419 AEVDRRLGELSRDEDLSRYIL 439


>gi|302343315|ref|YP_003807844.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus
           baarsii DSM 2075]
 gi|301639928|gb|ADK85250.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus
           baarsii DSM 2075]
          Length = 457

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/456 (49%), Positives = 318/456 (69%), Gaps = 25/456 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD+Y+IGQ  AKR+VAIALRNRWRR+Q+P +LRDE+ PKNIL++GPTGVG
Sbjct: 3   QLTPRQIVAELDKYVIGQDQAKRSVAIALRNRWRRRQVPEELRDEIAPKNILMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF KVE +KFTE+GY+GR+VE +IRDLV++A+N+V+ + R+ VRE+
Sbjct: 63  KTEIARRLAKMADAPFFKVEASKFTEVGYMGRDVESMIRDLVELAVNMVKNAERERVREK 122

Query: 126 ASINAEERILDALV--------GK-------------TATSNTREVFRKKLRDGEISDKE 164
           A   AEER+LD L+        GK             +  + TR   RK LR+G++S++ 
Sbjct: 123 AQELAEERLLDILLPPRQLAHDGKDLDESSHLELVRDSEENPTRAKLRKLLREGKLSERY 182

Query: 165 IDIEV--ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           +D+E+  A  S  +      GG     +NL E+   V     K++ ++ V +    L   
Sbjct: 183 VDLELDAAKPSGPMVEIFSAGGMEDLEMNLREMLGSVFPKQPKRR-KVKVPEALELLANA 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEG 281
           E+ +LIDMD V  +++  VE  G++FLDE DKI  R+ SG G  VSREGVQRDLLPLVEG
Sbjct: 242 EAAKLIDMDKVVEEALAKVEQEGMIFLDEIDKIATREHSGRGPDVSREGVQRDLLPLVEG 301

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V+TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L   DF  ILT+ 
Sbjct: 302 STVNTKYGMVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELEALTPEDFVRILTEP 361

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           E+ L  QYK LM TEG+ L+F  +SI+A+A +A  +N +  +IGARRL TVME++LE+++
Sbjct: 362 ENALTTQYKALMATEGLELEFLPESIEAIAQIAGRVNQSTENIGARRLHTVMEKLLEEVA 421

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+A D+    + +DA YVR  +     +TD+  +IL
Sbjct: 422 FNAPDMAGVRLSVDAAYVRQRLEAISVDTDLSRYIL 457


>gi|319897987|ref|YP_004136184.1| molecular chaperone and atpase component of hsluv protease
           [Haemophilus influenzae F3031]
 gi|317433493|emb|CBY81876.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3031]
          Length = 444

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +T+ ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|325982875|ref|YP_004295277.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas
           sp. AL212]
 gi|325532394|gb|ADZ27115.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas
           sp. AL212]
          Length = 440

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/451 (51%), Positives = 321/451 (71%), Gaps = 31/451 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVHELDKHIIGQNSAKRAVAIALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + A   V+ESR  E R++ 
Sbjct: 61  TEIARRLAKLAHAPFIKIEATKFTEVGYVGRDVDSIIRDLAETA---VKESRERETRKKQ 117

Query: 127 SI---NAEERILDALVGKT----ATSNT-------REVFRKKLRDGEISDKEIDIEVADT 172
            +   +AE+RILDAL+  +    A  NT       R+ FRKKLR+GE+ DKEI+IEVA +
Sbjct: 118 PLAEDHAEDRILDALLPGSRDFGAQMNTDDHNNLTRQKFRKKLREGELDDKEIEIEVAAS 177

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMG-----SGRKKKIR-MSVQKCYPELMRDESDR 226
            + +  F  PG        + +L S++ G     +G +KK R +++++    L+ +E+ +
Sbjct: 178 RASMEIFAPPG--------MEDLTSQIQGMFQNMTGERKKTRKLTIREAKKILLEEEAAK 229

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           +++ + +   ++Q VE  GIVFLDE DKI +R +  G  VSR+GVQRDLLPLVEG++VST
Sbjct: 230 MVNDEELKLSALQNVEQNGIVFLDEIDKIASRANNAGGDVSRQGVQRDLLPLVEGTTVST 289

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ SDF  ILT+T++ L 
Sbjct: 290 KYGMIKTDHILFIASGAFHMSKPSDLIPELQGRFPIRVELGSLSVSDFEQILTNTDACLT 349

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ L F  D+I  LA++A ++NS   +IGARRL TV+E++LE++S++A  
Sbjct: 350 RQYEALLATEGVTLQFGGDAIKRLAEIAHSVNSKTENIGARRLHTVIEKLLEEVSYNAPK 409

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +T+VI+A YV   + D     D+  ++L
Sbjct: 410 HSGETLVINAAYVDERLKDLSQSEDLARYVL 440


>gi|145640470|ref|ZP_01796054.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|145275056|gb|EDK14918.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.4-21]
          Length = 444

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|145628877|ref|ZP_01784677.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
 gi|144979347|gb|EDJ89033.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
          Length = 444

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVVDALGEVVENEDLSRFIL 444


>gi|268317431|ref|YP_003291150.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus
           DSM 4252]
 gi|262334965|gb|ACY48762.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus
           DSM 4252]
          Length = 467

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/465 (50%), Positives = 319/465 (68%), Gaps = 36/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+YI+GQ++AK+ VAIALRNRWRR   P ++R+E+MP NIL++GPTGVGK
Sbjct: 5   LTPREIVAELDKYIVGQEEAKKCVAIALRNRWRRLNAPPEMREEIMPNNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPFIKVE TKFTE+GYVGR+V+ +IRDLVD+A+N+VRE     VR++A
Sbjct: 65  TEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVDSMIRDLVDIAVNMVREEHEQRVRDRA 124

Query: 127 SINAEERILDALVGKTATS------------------------------NTREVFRKKLR 156
              AEERILD LV     +                               TR+ FR+KL+
Sbjct: 125 RELAEERILDILVPPARPTPRPEMVQGPGFFLQSTATTAADDAEAEARERTRQRFREKLK 184

Query: 157 DGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            GE+ D+EI+IEV ADT   +  F   G   +G+ NL ELF  + G  R+KK R++V + 
Sbjct: 185 AGELDDREIEIEVAADTMPMVQVFGPLGIEEMGV-NLQELFGNLTGR-RRKKRRVTVAEA 242

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRD 274
              L ++E+ +LIDMD V R++++ VE  GIVF+DE DK+ ARD    G  VSREGVQRD
Sbjct: 243 REILTQEEAQKLIDMDKVTREALERVEQSGIVFIDEIDKVAARDGARGGPDVSREGVQRD 302

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLPLVEG SV TKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF
Sbjct: 303 LLPLVEGCSVMTKYGMVRTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEEDF 362

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT  ++ L+ QY+ L+K EG+ ++FT+ ++  +A++A  +N  V +IGARRL TV+ 
Sbjct: 363 YKILTQPKNALLKQYQALLKAEGVEIEFTDAAVRKIAEIAARVNEEVENIGARRLHTVLT 422

Query: 395 RVLEDISFSASD--LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +LEDI F   D   +++ +V+DA+ V   +       D+  +IL
Sbjct: 423 TLLEDILFEVPDNVPEDRKIVVDADLVEQRLSGIVQNRDLSQYIL 467


>gi|319775580|ref|YP_004138068.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3047]
 gi|301169214|emb|CBW28811.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae 10810]
 gi|317450171|emb|CBY86385.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3047]
          Length = 444

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|237749448|ref|ZP_04579928.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
 gi|229380810|gb|EEO30901.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
          Length = 443

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/446 (51%), Positives = 309/446 (69%), Gaps = 16/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P +IV+ELD++++GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPDQIVTELDKHVVGQSKAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD++I   RE+   +VR 
Sbjct: 61  GKTEIARRLARLAEAPFIKIEATKFTEVGYVGRDVDTIIRDLVDISIKQTREAEMKKVRT 120

Query: 125 QASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+R+L+ L+               ++  NTR+VFRKKLR+G + DKEI+IEV D
Sbjct: 121 KAIDAAEDRVLNILIPPPRDFGFNSNESNASSGENTRQVFRKKLREGSLDDKEIEIEV-D 179

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S        P G       +  +FS  MGSGRKK  ++ V+     L+ +E+ +L++ D
Sbjct: 180 ESGPHMEIMAPPGMEEMTEQIKSMFSG-MGSGRKKSRKVKVRDAIKLLIEEEAAKLVNED 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + +I   E  GIVFLDE DKI +R    G  VSR GVQRDLLPL+EG++V+TKYG I
Sbjct: 239 ELRQKAITNAEQNGIVFLDEIDKIASRSEIGGADVSRAGVQRDLLPLIEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +S+P+DL+PE+QGR P+RV L+SL+  DF  ILT TE++LI QYK 
Sbjct: 299 KTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELESLSIEDFEQILTSTEASLISQYKA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TEG+ L+F  ++I  LA+++  +N    +IGARRL TVMER+LE+ISF+A D    T
Sbjct: 359 LLATEGMQLEFDNEAIRRLAEISHTVNERTENIGARRLYTVMERLLEEISFTAVDYN-GT 417

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ID  YV   +    ++ D+  ++L
Sbjct: 418 LTIDKAYVNERLEALSTDEDLSRYVL 443


>gi|229846582|ref|ZP_04466690.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|229810675|gb|EEP46393.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
          Length = 444

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444


>gi|238898390|ref|YP_002924071.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491374|sp|C4K5T0|HSLU_HAMD5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229466149|gb|ACQ67923.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 443

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/444 (51%), Positives = 307/444 (69%), Gaps = 15/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV +LD YIIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPSEIVKKLDDYIIGQDDAKRAVAIALRNRWRRMQLDTELRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D A+ +VR    +++R++
Sbjct: 63  KTEIARRLAKLAEAPFIKVEATKFTEVGYVGKEVESIIRDLTDTAVKMVRHQAIEKMRDK 122

Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   A+ERILD LV           G   TS  R+ F + L  GE++++EI+I++A T  
Sbjct: 123 AKELAQERILDILVSPARNSSGQVEGSQNTSTARQFFLEPLIKGELNEQEIEIDLAVTPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTV 233
           DI     PG   +    L  +F  +  S +K KIR M +      L+ +E+ +L++ + +
Sbjct: 183 DIEIMSPPGMEEM-TNQLQSMFQHM--SSQKHKIRKMKIGDALKLLIDEEASKLVNPEEL 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + +I  VE  GIVF+DE DKI    S +   VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 240 KQVAIHSVEQNGIVFIDEVDKICRHGSKSTSDVSREGVQRDLLPLVEGCTVSTKHGMVKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V++P+DL+PE+QGRFP+RV LKSL   DF  ILT+  ++L  QYK LM
Sbjct: 300 DHILFIASGAFQVAKPSDLIPELQGRFPIRVELKSLTPKDFERILTEPSASLTYQYKSLM 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEGI ++FT+D I ++A  A  +N    +IGARRL T++ERV+EDIS++A  +++K++ 
Sbjct: 360 KTEGIKIEFTKDGITSIAGAAGQVNENTENIGARRLHTILERVMEDISYNADKIKKKSIT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID++YV  H+    +  D+  FIL
Sbjct: 420 IDSKYVDTHLSKLINNEDLSRFIL 443


>gi|90408769|ref|ZP_01216914.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
 gi|90310113|gb|EAS38253.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
          Length = 446

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/445 (50%), Positives = 307/445 (68%), Gaps = 14/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++I +ELDR+IIGQ  AKRAVAIALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKQITAELDRHIIGQNKAKRAVAIALRNRWRRMQLDEEIRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE    +V  +
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVESIIRDLVEVSIKLTREEDMKKVTTK 122

Query: 126 ASINAEERILDALV------GKTATSN-------TREVFRKKLRDGEISDKEIDIEVADT 172
           A+  AE++ILD L+      G+  TSN        R+ FRKKLR+G++ DKEI++ V   
Sbjct: 123 AADIAEDKILDILIPPAKTSGEWDTSNDVVEDGAARQSFRKKLREGKLDDKEIEVSVPSP 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F  + G    KK +M ++     ++  ES  LI+ D 
Sbjct: 183 QIGVEIMAPPGMEEM-TNQLQGMFQNLAGKNENKKRKMKIKDALKSIIEIESANLINQDD 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I   EN+GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTKYG + 
Sbjct: 242 IKERAIFAAENHGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKYGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDH+LFIASGAF V+RP+DL+PE+QGR P+RV L++L + D   ILT+ +++L  QY+ L
Sbjct: 302 TDHMLFIASGAFQVARPSDLIPELQGRLPIRVELEALTEEDLSRILTEPKASLSEQYQAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TEG+ ++FT+D ID +A  A ++N T  +IGARRL T+MER+++++S+ ASD +  +V
Sbjct: 362 LATEGVSIEFTQDGIDKIAHSAWHVNETTENIGARRLHTLMERIMDELSYEASDRKGDSV 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +IDA+YV   + D     D+  FIL
Sbjct: 422 IIDAQYVANRLDDVIKNEDLSRFIL 446


>gi|187730898|ref|YP_001882626.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii
           CDC 3083-94]
 gi|238691703|sp|B2TWC7|HSLU_SHIB3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|187427890|gb|ACD07164.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii CDC
           3083-94]
          Length = 443

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+       G+T      S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + ID
Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV   +    ++ D+  FIL
Sbjct: 422 ADYVSKRLDALVADEDLSRFIL 443


>gi|114319231|ref|YP_740914.1| ATP-dependent protease ATP-binding subunit HslU [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312755|sp|Q0ACL3|HSLU_ALHEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114225625|gb|ABI55424.1| heat shock protein HslVU, ATPase subunit HslU [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 440

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/440 (50%), Positives = 311/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ  AKR+VAIALRNRWRR Q+   L+ E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVQELDKYIIGQDAAKRSVAIALRNRWRRMQVDEALQPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLVD+AI +VRE   + V+ Q
Sbjct: 63  KTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLVDIAIKLVREEAMERVQHQ 122

Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A+  AE+R+LD ++ +         ++ TR+  RKKLR+G + D+EI++E+  +   +  
Sbjct: 123 AADAAEDRVLDIMLPRAQSFDQEDPSAGTRQKLRKKLREGALDDREIEVELRASPMGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L ++F    G  + K+ +M V+     L  +E+ RL++ + +  +++
Sbjct: 183 MAPPGMEEM-TNQLQQMFQN-FGGEKTKRRKMKVKDALEVLKDEEAARLVNDEDLKAEAV 240

Query: 239 QMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + VE   IVFLDE DK+  R + G G  VSREGVQRDLLPLVEGS+VSTK+G + TDHIL
Sbjct: 241 ERVEQNAIVFLDEIDKVCKRAEQGTGGDVSREGVQRDLLPLVEGSTVSTKHGMVRTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF  IL++  ++L+ QY+ L+ TEG
Sbjct: 301 FIASGAFHLSKPSDLIPELQGRLPIRVELEALTTDDFVRILSEPSASLVHQYQALIATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
             L+FTED I  +A+VA  +NS   +IGARRL TVMER+LE+IS+SA+D   + V +DA+
Sbjct: 361 CELEFTEDGIRRVAEVAWEVNSRTENIGARRLHTVMERLLEEISYSAADRGGQQVTVDAD 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+G    + D+  +IL
Sbjct: 421 YVDQHLGGLVQDEDLSRYIL 440


>gi|307257824|ref|ZP_07539581.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863730|gb|EFM95656.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 438

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVRTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438


>gi|312882762|ref|ZP_07742496.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369546|gb|EFP97064.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 444

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/443 (51%), Positives = 311/443 (70%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAIN+  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAINMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+             +  TSNTR+VFRKKLR+G++ DK+I++++A    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQEEGTSNTRQVFRKKLREGKLDDKDIEVDLAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G   KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGD-TKKKRKLKIKDALKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM+
Sbjct: 302 HILFVTSGAFQVAKPSDLIPELQGRLPIRVELEALSSEDFKRILTEPKASLTEQYIALMQ 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TENVDIEFTEDGIVQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATDKAGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV+  +G+F  + D+  FIL
Sbjct: 422 DADYVKTRLGEFVEDEDLSRFIL 444


>gi|307251032|ref|ZP_07532956.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856862|gb|EFM88994.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 438

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438


>gi|297581511|ref|ZP_06943434.1| protease HslVU [Vibrio cholerae RC385]
 gi|297534349|gb|EFH73187.1| protease HslVU [Vibrio cholerae RC385]
          Length = 443

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/444 (52%), Positives = 310/444 (69%), Gaps = 17/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS--VQKCYPELMRDESDRLIDMDTV 233
           +     PG   +    L  LF  + G  +KK+       QK    L+ +E+ +L++ + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKDAQKA---LVEEEAAKLVNQEEL 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 240 KEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LM
Sbjct: 300 DHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALM 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  V
Sbjct: 360 KTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFV 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV+  +G+   + D+  FIL
Sbjct: 420 IDAAYVKARLGELVEDEDLSRFIL 443


>gi|257464769|ref|ZP_05629140.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           minor 202]
 gi|257450429|gb|EEV24472.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           minor 202]
          Length = 440

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  ++TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNASTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|323498089|ref|ZP_08103093.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis
           DSM 21326]
 gi|323316800|gb|EGA69807.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis
           DSM 21326]
          Length = 444

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLDESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEERILDAL+                +SNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +KK+        +  L  +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYVALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + I
Sbjct: 362 TEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +GD   + D+  FIL
Sbjct: 422 DAAYVKAKLGDTIEDEDLSRFIL 444


>gi|254360691|ref|ZP_04976840.1| arginine ABC superfamily ATP binding cassette transporter, ABC
           protein [Mannheimia haemolytica PHL213]
 gi|1346415|sp|P32180|HSLU_PASHA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|387857|gb|AAA25534.1| ATP-binding protein [Mannheimia haemolytica]
 gi|153091231|gb|EDN73236.1| arginine ABC superfamily ATP binding cassette transporter, ABC
           protein [Mannheimia haemolytica PHL213]
          Length = 440

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ + 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  ++TR+ FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++I
Sbjct: 358 TEGVEIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  FIL
Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440


>gi|262401961|ref|ZP_06078526.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC586]
 gi|262351933|gb|EEZ01064.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC586]
          Length = 443

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G++SDKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEDNSSTRQVFRKKLREGQLSDKEIEINVATPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+  M ++     L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRK-MKIKDALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ IL++ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILSEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VID
Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  FIL
Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443


>gi|90022343|ref|YP_528170.1| ATP-dependent protease ATP-binding subunit HslU [Saccharophagus
           degradans 2-40]
 gi|123090267|sp|Q21H71|HSLU_SACD2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|89951943|gb|ABD81958.1| heat shock protein HslVU, ATPase subunit HslU [Saccharophagus
           degradans 2-40]
          Length = 438

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/439 (51%), Positives = 313/439 (71%), Gaps = 10/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++I+GQQDAK+AVAIALRNRWRR QL A LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPREIVHELDQHIVGQQDAKKAVAIALRNRWRRMQLDAKLRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLVD +I ++RE    +VR +
Sbjct: 63  KTEIARRLAKLTNAPFIKVEATKFTEVGYVGRDVESIIRDLVDSSIKMMREQEMTKVRHR 122

Query: 126 ASINAEERILDALV-------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AEERIL+AL+       G    S+TR++FRKKLR+G++ DKEI+I+V+ T   +  
Sbjct: 123 AEEAAEERILNALLPPARGEDGAVEDSSTRQIFRKKLREGQLDDKEIEIDVSATPVGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  M +G+ KK +++V+K + +L  +E+ +L++ + +   +I
Sbjct: 183 MAPPGMEDM-TSQLQNMFSS-MNTGKTKKTKLTVKKAFKKLTDEEAAKLVNEEELKAQAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              E  GIVF+DE DK+  R+  +G  VSREGVQRDLLPL+EG +VSTK+G I TDHILF
Sbjct: 241 DAAEQNGIVFIDEIDKVAKREGNSGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFHVS+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  Q++ L+ TEG 
Sbjct: 301 ITSGAFHVSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPTASLTEQHQSLLATEGT 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            ++FT D I  +A++A  +N +  +IGARRL TV+E++LE+ISF+A +  +  V IDA +
Sbjct: 361 QIEFTADGIRKIAEIAYQVNKSTENIGARRLHTVLEKLLEEISFAAGE-SDNNVTIDAAF 419

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +G+     D+  FIL
Sbjct: 420 VDGQLGELTKNEDLSRFIL 438


>gi|253991723|ref|YP_003043079.1| ATP-dependent protease ATP-binding subunit HslU [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638498|emb|CAR67119.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783173|emb|CAQ86338.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus
           asymbiotica]
          Length = 443

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNYIIGQDKAKRAVAIALRNRWRRMQLNETLRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            ++  S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEIQSEPSAARQAFRKKLREGQLDDKEIEIDLATAPVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G   K + ++ ++  +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKHKSR-KLKIKDAFKLLVEEEASKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+   ++V I+
Sbjct: 362 EGMNISFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISFEASERHGQSVDIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV+ H+ +  ++ D+  FIL
Sbjct: 422 ADYVKEHLDELVADEDLSRFIL 443


>gi|157373025|ref|YP_001481014.1| ATP-dependent protease ATP-binding subunit HslU [Serratia
           proteamaculans 568]
 gi|167017229|sp|A8GL96|HSLU_SERP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157324789|gb|ABV43886.1| heat shock protein HslVU, ATPase subunit HslU [Serratia
           proteamaculans 568]
          Length = 444

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/443 (50%), Positives = 306/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIDKNRTRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S+ R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEEHQEPSSARQAFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMG 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS++  +++ I
Sbjct: 362 TEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 422 DADYVRNHLDELVADEDLSRFIL 444


>gi|239813916|ref|YP_002942826.1| ATP-dependent protease ATP-binding subunit HslU [Variovorax
           paradoxus S110]
 gi|239800493|gb|ACS17560.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus
           S110]
          Length = 442

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/444 (49%), Positives = 311/444 (70%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPQEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVEEKLRTEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDL ++A+   RE+   +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLAEIAVKQTREAESAKVRA 120

Query: 125 QASINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+       G T      + TR+ FRKKLR+ ++ DKEI++++A+  
Sbjct: 121 RAEDAAEDRILDVLLPPARGAEGATPALDGPNPTRQAFRKKLREHQLDDKEIELDLAEAR 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     P G       L  +F + +G G++K  ++ + +    L+ +E+ +L++ D +
Sbjct: 181 APLEIMG-PAGMEEMTEQLRGMFGQ-LGGGKRKTRKLKIAEAMRLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I   E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + T
Sbjct: 239 RTQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVSTKYGVVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF  ILT T ++L+ QY+ L+
Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ L+FT + ++ LA +A  +N    +IGARRL TVMER+L+++SF A+ ++ +T+ 
Sbjct: 359 ATEGVTLEFTPEGVNRLATIAYEVNERTENIGARRLSTVMERLLDEVSFDATRIEGQTIR 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   +     + D+  FIL
Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442


>gi|121590923|ref|ZP_01678245.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80]
 gi|121727614|ref|ZP_01680722.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52]
 gi|147673421|ref|YP_001218163.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae
           O395]
 gi|153213971|ref|ZP_01949164.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587]
 gi|153819926|ref|ZP_01972593.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457]
 gi|153825145|ref|ZP_01977812.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2]
 gi|153829461|ref|ZP_01982128.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39]
 gi|229507278|ref|ZP_04396783.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae BX 330286]
 gi|229513594|ref|ZP_04403058.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TMA 21]
 gi|229521739|ref|ZP_04411157.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TM 11079-80]
 gi|229524652|ref|ZP_04414057.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae bv. albensis VL426]
 gi|229527401|ref|ZP_04416793.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 12129(1)]
 gi|254225407|ref|ZP_04919018.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51]
 gi|254285865|ref|ZP_04960827.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226]
 gi|262170081|ref|ZP_06037770.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC27]
 gi|262191443|ref|ZP_06049630.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae CT 5369-93]
 gi|172047532|sp|A5F4X3|HSLU_VIBC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|121547245|gb|EAX57369.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80]
 gi|121630105|gb|EAX62510.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52]
 gi|124115541|gb|EAY34361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587]
 gi|125622041|gb|EAZ50364.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51]
 gi|126509524|gb|EAZ72118.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457]
 gi|146315304|gb|ABQ19843.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395]
 gi|148875044|gb|EDL73179.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39]
 gi|149741291|gb|EDM55333.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2]
 gi|150424047|gb|EDN15986.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226]
 gi|227014562|gb|ACP10772.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395]
 gi|229335033|gb|EEO00518.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 12129(1)]
 gi|229338233|gb|EEO03250.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae bv. albensis VL426]
 gi|229341333|gb|EEO06337.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TM 11079-80]
 gi|229349471|gb|EEO14427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TMA 21]
 gi|229354783|gb|EEO19704.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae BX 330286]
 gi|262021489|gb|EEY40201.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC27]
 gi|262032683|gb|EEY51234.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae CT 5369-93]
 gi|327485147|gb|AEA79554.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae LMA3894-4]
          Length = 443

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+           L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VID
Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  FIL
Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443


>gi|88813054|ref|ZP_01128296.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231]
 gi|88789687|gb|EAR20812.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231]
          Length = 441

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/441 (50%), Positives = 305/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVQELDKYIIGQARAKQAVAIALRNRWRRMQVDEALRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIK+E TKFTE+GYVGR+VE +IRDL D+A+ + R+   ++V   
Sbjct: 63  KTEIARRLAKLAGAPFIKIEATKFTEVGYVGRDVESMIRDLADIAVKMTRQQEMEKVTTA 122

Query: 126 ASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+ +         +   TR+  RKKLR+G++  +EI+IEV      + 
Sbjct: 123 ALDAAEERILDTLLPRARGFGTEDESADATRQKMRKKLREGDLDAREIEIEVRSAPIGME 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F  + G  R +  RM ++  +  L  +E  +L++ + V R +
Sbjct: 183 IMAPPGMEEM-TGQLQNMFQNLTGE-RTRTRRMKIKDAWRVLREEEGAKLVNEEEVKRKA 240

Query: 238 IQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++ VE  GIVFLDE DK+  R + G+G+ VSREGVQRDLLPLVEGS+VSTK+G INT+HI
Sbjct: 241 LEAVEQNGIVFLDEIDKVAKRGEHGSGMDVSREGVQRDLLPLVEGSTVSTKHGMINTNHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L  L   DF  ILT+ +++L+ QY+ L+ TE
Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRLPIRVELDPLTVDDFVRILTEPDASLVRQYQALIATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+FT++ +D +A+VA  +N    +IGARRL TVMER+LE +S+ A D  E+ V ID 
Sbjct: 361 GVRLEFTKEGVDRIAEVAWEVNERTENIGARRLHTVMERLLETVSYEAPDRAEELVRIDD 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+ D   + D+  +IL
Sbjct: 421 HYVDEHLADLARDQDLSRYIL 441


>gi|52424327|ref|YP_087464.1| ATP-dependent protease ATP-binding subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|62286783|sp|Q65VY1|HSLU_MANSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52306379|gb|AAU36879.1| HslU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 440

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/443 (51%), Positives = 315/443 (71%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADISMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V +T  ++TR+VFRKKLR+G++ ++EI+I+++ T  
Sbjct: 121 KAQDAAEDRILDVLLPPAKDQWGNVQETGNASTRQVFRKKLREGQLDEREIEIDIS-TPV 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           ++     PG   +    L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 180 NVEIMTPPGMEDM-TSQLQSLFEG-MSPNKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + VVI
Sbjct: 358 TEGVDIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERAGEKVVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|54307474|ref|YP_128494.1| ATP-dependent protease ATP-binding subunit HslU [Photobacterium
           profundum SS9]
 gi|62286820|sp|Q6LVI3|HSLU_PHOPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|46911894|emb|CAG18692.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Photobacterium profundum SS9]
          Length = 443

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+                S+TR+ FRKKLR+G++ DKEI++++A     
Sbjct: 124 EELAEDRILDILLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G+  KK+ +M ++        +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEDM-TNQLQGMFQNLAGNTSKKR-KMKIKDAIKAATEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 QAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L  QYK LM T
Sbjct: 302 ILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPKASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + +DF+ED I+ +AD A  +N    +IGARRL TVMER++E++SF A+D  ++ ++ID
Sbjct: 362 ESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLIID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   + +     D+  FIL
Sbjct: 422 EAYVNERLDELVENEDLSRFIL 443


>gi|304311982|ref|YP_003811580.1| Heat shock protein chaperone [gamma proteobacterium HdN1]
 gi|301797715|emb|CBL45937.1| Heat shock protein chaperone [gamma proteobacterium HdN1]
          Length = 446

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/448 (51%), Positives = 314/448 (70%), Gaps = 19/448 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP  +R+E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDKHIIGQHDAKRAVAIALRNRWRRMQLPETMRNEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+A+ +VRE   ++VR +A
Sbjct: 61  TEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLADMAVKLVREQEMEKVRNRA 120

Query: 127 SINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADTS 173
              AE+RILD LV +  +S+             TR+VFRKKLR+G++ DKEI+IE+A  S
Sbjct: 121 LDAAEDRILDVLVPQPRSSDWQTSTLERNEDSATRQVFRKKLREGQLDDKEIEIELAAPS 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +FS +  SG+ KK R+ ++  +  +  +E+ +L++ D +
Sbjct: 181 VGVEIMAPPGMEEM-TSQLQSMFSSI-SSGKLKKKRLKIKDAFTRIQDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +V+TKYG + T
Sbjct: 239 KGRAVKAVEQNGIVFIDEIDKVAKRGEFSGSDVSREGVQRDLLPLIEGCTVNTKYGMVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+   ++  QYK L+
Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELQALSADDFVKILTEPNCSITEQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----E 409
             EG+ +DF +D+I  +A++A  +N  V +IGARRL TVME++LEDIS+ ASDL     E
Sbjct: 359 GAEGLKVDFADDAIRRIAEIAWQVNERVENIGARRLHTVMEKLLEDISYDASDLATQHGE 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++ A+ V   +       D+  +IL
Sbjct: 419 NVYMLHAQQVDDRLQALAGNEDLSRYIL 446


>gi|27904995|ref|NP_778121.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|31076735|sp|Q89A31|HSLU_BUCBP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27904393|gb|AAO27226.1| ATP-dependent hsl protease ATP-binding subunit HslU [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 444

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/443 (50%), Positives = 311/443 (70%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR +L  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVKELDRFIIGQKKAKRAVAIALRNRWRRMKLNKELRYEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTEIGYVG+ V+ IIRDL D AI +++ +   + +++A
Sbjct: 64  TEIARRLAKLAKAPFIKVEATKFTEIGYVGKEVDSIIRDLTDSAIKMIKSTAIKKNKKRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD LV               +  T ++FRKKLR+G + DKEI+I VA T   
Sbjct: 124 KELAEERILDVLVPTIKNNWKKTNTNNNSEATLQIFRKKLREGTLDDKEIEINVAVTPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  LF  + G+ R  K ++ ++     L+ +E+ +LI+++ + +
Sbjct: 184 IEIMAPPGMEEL-TNQLQSLFQNLTGNKRNIK-KLKIKDAMKLLIEEEAAKLINLEELKK 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DKI      +G  +SREGVQRDLLPL+EG +VSTK+G + TDH
Sbjct: 242 EAIYAVEQHGIVFIDEIDKICRNHGSSGPDISREGVQRDLLPLIEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L  +DF LILT+ ++++ +QY+ L+KT
Sbjct: 302 ILFIASGAFQVSTPSDLIPELQGRLPIRVELQALTINDFELILTEPKASVTMQYQALLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVI 414
           E + ++FT++ I  +A+ A  +N ++ +IGARRL TV+ER++EDISF ASD + E T+ I
Sbjct: 362 EKVKINFTKEGIRHIAEAAWKVNESMENIGARRLHTVLERLMEDISFHASDHRNEITITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+ H+    S  D+  FIL
Sbjct: 422 DEKYVQKHLDKLISNEDLSRFIL 444


>gi|126666728|ref|ZP_01737705.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
 gi|126628773|gb|EAZ99393.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
          Length = 442

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 308/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQQ+AKRAVAIALRNRWRR QL  +LR+E+ PKNIL++GPTGVGK
Sbjct: 4   LTPREIVLELDKHIVGQQEAKRAVAIALRNRWRRMQLNDELREEISPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDL D+A+ ++RE         A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVDSIIRDLADMAVKMLREQEMKRHENSA 123

Query: 127 SINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDAL+      N          TR++FRKKLR+GE+ DKEI+I++ ++S+ +
Sbjct: 124 LDAAEDRILDALLPPARDFNDDNKPREDSATRQMFRKKLREGELDDKEIEIDLRNSSAGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  M   ++K  +M V      +  +E+ +L++ + + + 
Sbjct: 184 EIMAPPGMEEM-TNQLQSMFAN-MSQDKRKTRKMRVADALRRVKDEEAAKLVNEEEIKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++Q VE  GIVFLDE DK+  R   +   VSREGVQRDLLPL+EGS+V+TKYG+I TDHI
Sbjct: 242 AVQAVEQNGIVFLDEIDKVAKRSENSSSDVSREGVQRDLLPLIEGSTVTTKYGAIRTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGR P+RV L +L  +DF+ ILT+ +++L+ QY+ LM  E
Sbjct: 302 LFIASGAFHLTKPSDLIPELQGRLPIRVELHALTPNDFKRILTEPDASLVQQYEALMGAE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FT+D+I  LA+VA  +N    +IGARRL T++ER+LE +SF A D   +   + A
Sbjct: 362 GLKLSFTDDAITRLAEVAWKVNENTENIGARRLHTMLERLLESLSFDAGDKITEEFEVTA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV   +G    + D+  +IL
Sbjct: 422 EYVEEKLGKLAEDEDLSRYIL 442


>gi|258620455|ref|ZP_05715493.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM573]
 gi|258625668|ref|ZP_05720547.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM603]
 gi|262166683|ref|ZP_06034420.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM223]
 gi|262170394|ref|ZP_06038072.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           MB-451]
 gi|258581906|gb|EEW06776.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM603]
 gi|258587334|gb|EEW12045.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM573]
 gi|261891470|gb|EEY37456.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           MB-451]
 gi|262026399|gb|EEY45067.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM223]
          Length = 443

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I V      
Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVTAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+           L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VID
Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  FIL
Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443


>gi|167856216|ref|ZP_02478952.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219871415|ref|YP_002475790.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           parasuis SH0165]
 gi|254802308|sp|B8F690|HSLU_HAEPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167852671|gb|EDS23949.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219691619|gb|ACL32842.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           SH0165]
          Length = 440

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL +V++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLADAPFIKVEATKFTEVGYVGKEVDSIIRDLANVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  ++TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNTSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDSISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|85711522|ref|ZP_01042580.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
 gi|85694674|gb|EAQ32614.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
          Length = 447

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/447 (51%), Positives = 313/447 (70%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV EL+R+IIGQ  AKRAVA+ALRNRWRR QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDDLRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+   RE    +VR +
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQKREEMMQKVRYR 122

Query: 126 ASINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIEVA 170
           A   AE+RILD L+    TS               ++R+VFRKKLR+G + DKEI+I++A
Sbjct: 123 AEEAAEDRILDVLLPPARTSGGWGAEEDKGNDEQRHSRQVFRKKLREGSLDDKEIEIDLA 182

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG   +    L  +F   MG+ + KK ++ ++  + +L+ +E+ +L++ 
Sbjct: 183 MPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGNDKTKKRKIKIKDAFKQLIDEEAAKLLNP 240

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D V   +I+ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG++V+TK+G 
Sbjct: 241 DEVKEAAIESVEQNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVNTKHGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK
Sbjct: 301 IRTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELDALTSGDFVRILTEPNASLTTQYK 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ + FT+D I  +A++A ++N T  +IGARRL TV+ER++E+ISF+A+D   +
Sbjct: 361 ALLNTEGVEIGFTDDGIQRIAEIAFHVNETTENIGARRLHTVLERLMEEISFNATDHSGE 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ +DA YV  HIG+   + D+  FIL
Sbjct: 421 SISVDASYVDKHIGELSQDEDLSRFIL 447


>gi|260770842|ref|ZP_05879771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           furnissii CIP 102972]
 gi|260614079|gb|EEX39269.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           furnissii CIP 102972]
          Length = 443

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+                S+TR+ FRKKLR+G++ DKEI++ VA     
Sbjct: 124 EEQAEERILDALLPPARDAWGEAEHNDTASSTRQTFRKKLREGKLDDKEIEVNVAVAQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G   KKK ++ ++  +  L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVTTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYMALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TVMER++++ISF A++    ++ ID
Sbjct: 362 EEVDIAFTEDGIKQIADAAWQVNETTENIGARRLHTVMERLMDEISFDATEKAGASLTID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           + YVR  +G+   + D+  FIL
Sbjct: 422 SAYVRAKLGELVEDEDLSRFIL 443


>gi|255659258|ref|ZP_05404667.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida
           DSM 20544]
 gi|260848713|gb|EEX68720.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida
           DSM 20544]
          Length = 468

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/457 (49%), Positives = 310/457 (67%), Gaps = 29/457 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV ELDRYI+GQ +AKR+VAIALRNRWR +QL   +++E++PKNI+++G TGVGKT
Sbjct: 14  TPREIVEELDRYIVGQDEAKRSVAIALRNRWRSRQLTGAMKEEVIPKNIMMIGSTGVGKT 73

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++R+ R +EV+++A 
Sbjct: 74  EIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEAAVRMIRQERLEEVQDKAK 133

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
             AEERILD  V +   S                            RE  RK+L  GE+ 
Sbjct: 134 EQAEERILDVFVPEPKKSQNPLGRLFGGDDEEKDKPAEEPKKYQAGREWVRKRLEKGELE 193

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           D+ I+I+V +T   +      G +  G+  NL ++   +M   R KK +++V +      
Sbjct: 194 DELIEIDVEETRRPMVGM-FSGSSLEGMGDNLQDMIGNIMPK-RHKKRKVTVAQARKIFT 251

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           ++E+ +LIDM+ V  +++++ E  GIVFLDE DK+  + + +G  VSREGVQRD+LP+VE
Sbjct: 252 QEEAGKLIDMEAVAEEAVKVTEYSGIVFLDEIDKVAVKGNSSGADVSREGVQRDILPIVE 311

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS VSTKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+
Sbjct: 312 GSQVSTKYGPVRTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELKSLRKEDFERILTE 371

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ LI QY+ L+ TEGI L F  D+I  +A++A  +N    DIGARRL T++E+VLEDI
Sbjct: 372 PQNALIKQYEALLATEGITLSFKPDAISRIAELACEVNEQAEDIGARRLHTLLEKVLEDI 431

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L +K VVIDA YV   + D     D+  FIL
Sbjct: 432 SFRAPELTDKDVVIDAAYVNERLADIVVNRDLSQFIL 468


>gi|242280398|ref|YP_002992527.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           salexigens DSM 2638]
 gi|259491369|sp|C6C0P1|HSLU_DESAD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|242123292|gb|ACS80988.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           salexigens DSM 2638]
          Length = 457

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/457 (48%), Positives = 315/457 (68%), Gaps = 27/457 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD++IIGQ DAKR VAIA+RNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 3   NLTPREIVSELDKFIIGQSDAKRMVAIAMRNRWRRQQLPPELRDEIAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG PF KVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+   ++V+ +
Sbjct: 63  KTEIARRLAKLAGCPFFKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRKEEMEKVKVK 122

Query: 126 ASINAEERILDALVGKTAT------------------------SNTREVFRKKLRDGEIS 161
           A  +AE+ +LD L+  +                          S+TRE FRK  R+G++ 
Sbjct: 123 AEKHAEDALLDILLPSSKPKQPGMGFFNPAAPEEQEEQPSADQSSTREKFRKMWREGKLD 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D+E++IEV+     +    +PG   +G + ++++  K M   +KK  ++ +++ Y  L++
Sbjct: 183 DREVEIEVSVQGGGVEIMSMPGMEDMG-MQVNDMIGK-MFPNKKKMRKVKIREAYDILIQ 240

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVE 280
            ESD+LIDMD V   + + VE  GI+FLDE DKI     G G   VSREGVQRDLLP+VE
Sbjct: 241 QESDKLIDMDNVAELARERVEQGGILFLDEIDKIAGNQEGGGSANVSREGVQRDLLPVVE 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G  V+TKYG + TDHILFI++GAF  ++P+DL+PE+QGRFP+RV L SL+K DF  ILT+
Sbjct: 301 GCVVNTKYGMVKTDHILFISAGAFSYAKPSDLIPELQGRFPLRVELTSLDKDDFYRILTE 360

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L +QYK L++TE + +DF+ ++++ +A  A   N    +IGARRL T+ME++L D+
Sbjct: 361 PQNALTVQYKALLETENLNIDFSREALEEVALNAQKFNEETENIGARRLYTIMEKILSDL 420

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A D    ++VID EYV+  + D   + D+  +IL
Sbjct: 421 SFEAPDRSGDSIVIDKEYVQKQLQDVTEDRDLSRYIL 457


>gi|167627816|ref|YP_001678316.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668377|ref|ZP_04755955.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876910|ref|ZP_05249620.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|189043911|sp|B0TZG2|HSLU_FRAP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167597817|gb|ABZ87815.1| ATP-dependent protease HslVU, ATPase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254842931|gb|EET21345.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 455

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/457 (49%), Positives = 313/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQVMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDDEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  + +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120

Query: 123 REQASINAEERILDALV----------------------GKTATSNTREVFRKKLRDGEI 160
            E+A+I AE+RILD L+                       K   + TRE+FRKK+++GE+
Sbjct: 121 TEKAAILAEDRILDVLIPPARASESKVGFANEPAEDAQSKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +DKEI+IEV+     I     PG   +    L +LFS  + S +KK  +M ++     + 
Sbjct: 181 NDKEIEIEVSVAPKSIGVMGPPGMEDM-TNQLQDLFSS-LSSDKKKTKKMRIKDAIKLVK 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +LI+ + +   +++ VE  GIVFLDE DK+  +   +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLINEEDIKARALESVEQNGIVFLDEIDKVCKKSGTSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILKE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A+++  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVELSFEEDAIRKIAEISFQVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL+ K++ I  +Y+   +       ++  +IL
Sbjct: 419 SFDAPDLENKSINITTDYINEKLSGLVKNKNLSQYIL 455


>gi|261211240|ref|ZP_05925529.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC341]
 gi|260839741|gb|EEX66352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC341]
          Length = 444

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEER+LDAL+             +  +S TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEENSSTTRQVFRKKLREGQLNDKEIEINVATPQM 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF  + G  +KK+  M ++     L+ +E+ +L++ + + 
Sbjct: 184 GVEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRK-MKIKDALKALVEEEAAKLVNQEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 302 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYVALMK 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 362 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 422 DAAYVKARLGELVEDEDLSRFIL 444


>gi|317152586|ref|YP_004120634.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942837|gb|ADU61888.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 459

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/459 (49%), Positives = 314/459 (68%), Gaps = 29/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDRYIIGQ  AKR VAIA+RNRWRRQQL  +LRD++ PKNI+L+GPTGVG
Sbjct: 3   NLTPREIVSELDRYIIGQDAAKRMVAIAMRNRWRRQQLDPELRDDIAPKNIILMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA  PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+   ++VR +
Sbjct: 63  KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122

Query: 126 ASINAEERILDALVGKTATSN-------------------------TREVFRKKLRDGEI 160
           A  NAEER+LD L+ ++                             TRE FR+  R G++
Sbjct: 123 AEKNAEERLLDLLLPRSKPGGGQAGFFMGSQSGEIEEKQETGRDDATREKFRQMFRAGQL 182

Query: 161 SDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            ++E+++EV   + + +    IPG   +G  NL   F+ +  S RK++ +M +++ Y  L
Sbjct: 183 DEREVELEVRVQSGAQVEIMAIPGMEGMGS-NLQSAFANMFPSKRKQR-KMKIREAYLVL 240

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPL 278
           + +E+++LID D V+  + + VE  GI+FLDE DKI +R D   G  VSREGVQRDLLP+
Sbjct: 241 VDEEAEKLIDPDAVNELARERVEQQGILFLDELDKIASRHDQAGGADVSREGVQRDLLPV 300

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R  L SL+K +F  IL
Sbjct: 301 VEGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREALDSLHKEEFYRIL 360

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L +QYK L+ TEG+ +DFT ++++ +A  A  +N    +IGARRL T+ME++L 
Sbjct: 361 TEPRNALTVQYKALLGTEGVSVDFTREALEEIAATAEKINEETENIGARRLYTIMEKILA 420

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++S+ A D    TVVID +YV   +GD     D+  +IL
Sbjct: 421 NLSYEAPDKSGVTVVIDRDYVLEQLGDVVENRDLSRYIL 459


>gi|124268574|ref|YP_001022578.1| ATP-dependent protease ATP-binding subunit HslU [Methylibium
           petroleiphilum PM1]
 gi|124261349|gb|ABM96343.1| heat shock protein HslVU, ATPase subunit HslU [Methylibium
           petroleiphilum PM1]
          Length = 448

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/450 (50%), Positives = 310/450 (68%), Gaps = 21/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELDR+I+GQQDAKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDRHIVGQQDAKRAVAIALRNRWRRQQVDDRLRPEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDLVD+A+   RE+     R +A
Sbjct: 61  TEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLVDLAVKQTREAAIRAHRVRA 120

Query: 127 SINAEERILDALVGKTAT------------------SNTREVFRKKLRDGEISDKEIDIE 168
              AEERILD L+   A                   S  R+ FRK+LR+G + DKEI++E
Sbjct: 121 EDAAEERILDVLLPPPAHAGAGFGLSTSSPAPAPADSTARQTFRKRLREGTLDDKEIELE 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +A+  + +     PG   +    L  +F+  +G  R+K  ++ + +    L+ +E+ +L+
Sbjct: 181 LAEPRAAVELLGPPGMEDMA-EQLKGMFAS-LGQTRRKTRKLKIAEALKLLVDEEAAKLV 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           + D +   ++   E  GIVF+DE DK+ +R D  +G  VSR+GVQRDLLPLVEG++VSTK
Sbjct: 239 NEDEIKTQALASAEQNGIVFIDEIDKVTSRGDGASGAEVSRQGVQRDLLPLVEGTTVSTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           +G++ TDHILFIASGAFH++RP+DL+PE+QGRFP+RV L SL   DF  ILT T ++L+ 
Sbjct: 299 HGTVKTDHILFIASGAFHLARPSDLIPELQGRFPIRVELGSLRVEDFEAILTQTHASLVR 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ LDF  + +  LA +A ++N    +IGARRL TVMER+L+++SF A +L
Sbjct: 359 QYQALLDTEGVRLDFRPEGVRRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDAPNL 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +T+ IDA YV   +G    + D+  FIL
Sbjct: 419 GGQTIAIDAAYVDRKLGALAVDEDLSRFIL 448


>gi|326796962|ref|YP_004314782.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas
           mediterranea MMB-1]
 gi|326547726|gb|ADZ92946.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas
           mediterranea MMB-1]
          Length = 441

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 315/440 (71%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PRE V+ LD++IIGQQ AKRAVAIALRNRWRR QLP D+R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPRETVNALDQHIIGQQSAKRAVAIALRNRWRRMQLPEDMRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+ APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE     +R +A
Sbjct: 64  TEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETTRMRHKA 123

Query: 127 SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              AE+RILDAL+             SNTR++FRKKLR+G++ DKEIDI+V++T   +  
Sbjct: 124 EDAAEDRILDALLPPARGGDPELNNESNTRQIFRKKLREGQLDDKEIDIDVSETPVGVEI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  MG+ RKK+ ++ V+    ++  +E+ +L++ D +   ++
Sbjct: 184 MAPPGMEEM-TSQLQNMFSS-MGNDRKKRRKLKVKDALRQVRDEEAAKLVNEDELKARAV 241

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VE  GIVFLDE DK+      +   VSREGVQRDLLPLVEG +V+TKYG I TDHILF
Sbjct: 242 EAVEQNGIVFLDEIDKVAKSGERSSGEVSREGVQRDLLPLVEGCTVNTKYGMIKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+++P+DL+PE+QGR P+RV L +L   DF+ IL +  ++L  QY  L KTE I
Sbjct: 302 IASGAFHLTKPSDLIPELQGRLPIRVELDALTVEDFKRILVEPSASLTKQYVALAKTENI 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            ++FT++ I  +A++A  +N TV +IGARRL TV+ER+LE++S+SASD+  ++ V I AE
Sbjct: 362 DINFTDEGITRIAEIACQVNETVENIGARRLHTVLERLLEEVSYSASDMPDDQQVNITAE 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   +G+   + D+  +IL
Sbjct: 422 YVDEQLGEVVKDEDLSQYIL 441


>gi|221133925|ref|ZP_03560230.1| ATP-dependent protease ATP-binding subunit [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 306/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQDAKRAV+IALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQQDAKRAVSIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKEQATAKVKFRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+           +T   +TR+ FRKKLR+G++ DKEI+I++A     +
Sbjct: 124 EEAAEERILDVLIPPPKDIFGDNQETDNKSTRQAFRKKLREGKLDDKEIEIDIAMPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + G+  KKK  + ++  +  L+ +E+ +L++ + + ++
Sbjct: 184 EIMAPPGMEDM-TNQLQGMFQNLSGNQSKKKT-LPIKDAFKYLVEEEAAKLVNQEDLKQE 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ +E  GIVF+DE DKI  R+  +   VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF +S+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+ TE
Sbjct: 302 LFITSGAFQMSKPSDLIPELQGRLPIRVELQALEVKDFVRILTEPHASLTEQYVALLGTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TVMER++EDIS+ AS+ Q + + +D 
Sbjct: 362 GVSVNFTQDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKQGEAIEVDK 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+       D+  +IL
Sbjct: 422 DYVNRHLELLVDNEDLSRYIL 442


>gi|254427703|ref|ZP_05041410.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp.
           DG881]
 gi|196193872|gb|EDX88831.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp.
           DG881]
          Length = 447

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/446 (51%), Positives = 319/446 (71%), Gaps = 15/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IVSEL+R+I+GQ  AK+AVA+ALR RWRR  LPA++R E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKDIVSELNRHIVGQDAAKKAVALALRTRWRRMLLPAEMRAEVAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+++AI ++R+     V  Q
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEMAIKLLRDKEIARVGSQ 122

Query: 126 ASINAEERILDALV-------GKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+       G T     S TR++FRKKLR+GE+ DKEID++VA     
Sbjct: 123 ADDAAEERILDALLPAARAEDGSTNDNTDSKTRQIFRKKLREGELDDKEIDVDVASQPPG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L ++FSK+ G+ ++K  ++ V++ Y  +  +E+ R ++ D +  
Sbjct: 183 VDIMAPPGMEEM-TSQLQQMFSKMGGNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKV 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I +VEN GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTKYG + TDH
Sbjct: 242 QAIDVVENNGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGR P+RV L  L+  DF+ ILT+ + +L  QYK L++T
Sbjct: 302 ILFIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKT 411
           EG+ L+ T+D I  +A+VA  +N    +IGARRL TV+E++LE+ISF A  L     +K 
Sbjct: 362 EGLNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKP 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V+DAE V  ++G+   + D+  +IL
Sbjct: 422 LVLDAEAVDRYLGELADDEDLSRYIL 447


>gi|319764382|ref|YP_004128319.1| heat shock protein hslvu, atpase subunit hslu [Alicycliphilus
           denitrificans BC]
 gi|330826601|ref|YP_004389904.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans K601]
 gi|317118943|gb|ADV01432.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans BC]
 gi|329311973|gb|AEB86388.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans K601]
          Length = 434

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/436 (52%), Positives = 311/436 (71%), Gaps = 7/436 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+ + LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDNHIVGQAAAKRAVAIALRNRWRRQQVDSGLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +A
Sbjct: 61  TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRARA 120

Query: 127 SINAEERILDALV-----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
              AEERILD L+     G+++    R+VFRKKLR+G++ DKEI+I+VAD    +     
Sbjct: 121 EDAAEERILDVLIPPPRGGESSDGTARQVFRKKLREGQLDDKEIEIDVADARPQLEIMG- 179

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           P G       L  +FS  +G  R+K  ++ + +    L  +E+ +L++ + V   ++   
Sbjct: 180 PQGMEEMAEQLRGMFSH-LGQERRKTRKLKIAEALRLLTDEEAAKLVNEEEVKTRAVSNA 238

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVF+DE DK+ AR    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIAS
Sbjct: 239 EQNGIVFIDEIDKVAARQEAGGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIAS 298

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TEG+ L+
Sbjct: 299 GAFHLAKPSDLIPELQGRFPIRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALE 358

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT + I  LA +A ++N    +IGARRL TVMER+L+++SF A+ L  +TVV+DA+YV  
Sbjct: 359 FTPEGITRLAHIAYDVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVVVDADYVNA 418

Query: 422 HIGDFPSETDMYHFIL 437
            +     + D+  +IL
Sbjct: 419 RLQSLSQDEDLSRYIL 434


>gi|260877941|ref|ZP_05890296.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308089756|gb|EFO39451.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|328471827|gb|EGF42704.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           parahaemolyticus 10329]
          Length = 443

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 305/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            K  TSNTR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++      VID
Sbjct: 362 ENVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD     D+  FIL
Sbjct: 422 AAYVKERLGDTIENEDLSRFIL 443


>gi|319945236|ref|ZP_08019498.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia
           mirabilis ATCC 51599]
 gi|319741806|gb|EFV94231.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia
           mirabilis ATCC 51599]
          Length = 450

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/451 (50%), Positives = 310/451 (68%), Gaps = 22/451 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIVSELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E++PKNIL++GPTGVG
Sbjct: 3   QMTPQEIVSELDKHIIGQDKAKRAVAIALRNRWRRQQVAEPLRHEIVPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVG++V+ IIRDL++ AI   R+  +  V  +
Sbjct: 63  KTEIARRLARLANAPFIKIEATKFTEVGYVGKDVDSIIRDLMEAAIKEERDRAKQRVDAR 122

Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166
           A   AEER+LDAL+  +A                    S  R+ FRK+LR+G++ DKEI+
Sbjct: 123 ARDLAEERVLDALLPSSAHQRAPTDYRDLEKPISTADDSVARQKFRKRLREGDLDDKEIE 182

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+VA    +I     P G       L  +   + G  R++K+R++  +    L+ +E+ +
Sbjct: 183 IDVAQPMPNIGIMG-PAGMEELTNQLQGMMQGLPGKTRQRKMRIA--EAMKLLVDEEAGK 239

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ + +   ++  VE  GIVFLDE DKI  R    G  VSR+GVQRDLLPLVEG++V+T
Sbjct: 240 LVNDEEIKLTALANVEQNGIVFLDEIDKIAVRSGVQGGDVSRQGVQRDLLPLVEGTAVNT 299

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           +YG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT+T+++L 
Sbjct: 300 RYGVVKTDHILFIASGAFHLSKPSDLVPELQGRFPIRVELSSLSVEDFRRILTETDASLT 359

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEGI LDF ED I+ LA+ A  +N    +IGARRLQTVMER+LE++SF    
Sbjct: 360 KQYQALLATEGITLDFREDGINKLAETAFRVNEGTENIGARRLQTVMERLLEEVSFQGDR 419

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +TVVIDA +V   +GD   + D+  ++L
Sbjct: 420 RSGETVVIDAAFVEERLGDIARDEDLSRYVL 450


>gi|15642669|ref|NP_232302.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|229509799|ref|ZP_04399280.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|229516923|ref|ZP_04406369.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC9]
 gi|229606784|ref|YP_002877432.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae
           MJ-1236]
 gi|254851211|ref|ZP_05240561.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           cholerae MO10]
 gi|255744365|ref|ZP_05418317.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera
           CIRS 101]
 gi|262158525|ref|ZP_06029640.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae INDRE 91/1]
 gi|11133077|sp|Q9KNQ7|HSLU_VIBCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9657268|gb|AAF95815.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229345986|gb|EEO10958.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC9]
 gi|229353273|gb|EEO18212.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|229369439|gb|ACQ59862.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae MJ-1236]
 gi|254846916|gb|EET25330.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           cholerae MO10]
 gi|255737890|gb|EET93283.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera
           CIRS 101]
 gi|262029686|gb|EEY48335.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae INDRE 91/1]
          Length = 443

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA  PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+           L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VID
Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  FIL
Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443


>gi|270265177|ref|ZP_06193439.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia
           odorifera 4Rx13]
 gi|270040811|gb|EFA13913.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia
           odorifera 4Rx13]
          Length = 444

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/443 (50%), Positives = 304/443 (68%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLDEMLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIEKNRTRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLASAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G   K + ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLGGQKHKPR-KLKIKEAFKLLIEEEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMG 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS++  +++ I
Sbjct: 362 TEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 422 DADYVRNHLDELVADEDLSRFIL 444


>gi|28897023|ref|NP_796628.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153840198|ref|ZP_01992865.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus AQ3810]
 gi|260362284|ref|ZP_05775251.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus K5030]
 gi|260897599|ref|ZP_05906095.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260899529|ref|ZP_05907924.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|31340157|sp|Q87T21|HSLU_VIBPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28805231|dbj|BAC58512.1| protease HslVU, ATPase subunit HslU [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746140|gb|EDM57270.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus AQ3810]
 gi|308087499|gb|EFO37194.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308108759|gb|EFO46299.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308111318|gb|EFO48858.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus K5030]
          Length = 443

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+            K  TSNTR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++      VID
Sbjct: 362 EDVDIEFTEDGITRIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD   + D+  FIL
Sbjct: 422 AAYVQARLGDTIEDEDLSRFIL 443


>gi|78357057|ref|YP_388506.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123727691|sp|Q30ZT5|HSLU_DESDG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|78219462|gb|ABB38811.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 449

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/448 (49%), Positives = 309/448 (68%), Gaps = 19/448 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD+YIIGQ+ AKR VA+ALRNRWRRQQL   +RDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVSELDKYIIGQEQAKRMVAVALRNRWRRQQLEPAIRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL+ +PF+KVE TKFTE+GYVGR+VE +IRDL+++++N+VRE  RD V+ +A
Sbjct: 64  TEIARRLARLSSSPFLKVEATKFTEVGYVGRDVESMIRDLMEISVNLVREEERDSVKTRA 123

Query: 127 SINAEERILDALVGKT---------------ATSNTREVFRKKLRDGEISDKEIDIEVA- 170
              AEER+LD L+  +                  NTR   R   R+G +  +E+++EV  
Sbjct: 124 EAAAEERLLDLLLPSSPAVNTSFDTPQTPAGGAENTRNKLRTLWREGRLDHREVEMEVEM 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +   +    +PG   +G     ++FSK     RK++ RM V   Y  L+++ES+RLID 
Sbjct: 184 QSGPQMDVMTMPGMEDIGS-QFKDMFSKAFPPKRKRR-RMKVGDAYAILLQEESERLIDH 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYG 289
           + V   + +  E  GI+FLDE DKI +   G     +SREGVQRDLLP+VEGS+V+TKYG
Sbjct: 242 EKVIELARERAEQTGIIFLDEIDKIASSQQGGKTADISREGVQRDLLPIVEGSAVNTKYG 301

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I+TDHILFI +GAFH S+P+DL+PE+QGRFP+RV L +L   +F  ILT+ ++ L +QY
Sbjct: 302 IIHTDHILFIGAGAFHYSKPSDLIPELQGRFPLRVELTALGSKEFLRILTEPKNALTVQY 361

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K L+ TEG+ +++TED+++A+AD A   N    +IGARRL T+ME++L D+SF A D   
Sbjct: 362 KALLATEGVQIEYTEDALEAVADFAQEANQETENIGARRLYTIMEKILADLSFEAPDKSG 421

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +VID EYVR H+ D  +  D+  +IL
Sbjct: 422 ERIVIDREYVRQHLADITANRDLTRYIL 449


>gi|261491846|ref|ZP_05988425.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494683|ref|ZP_05991163.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309648|gb|EEY10871.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312501|gb|EEY13625.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 440

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/443 (51%), Positives = 311/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ + 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  ++TR+ FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++I
Sbjct: 358 TEGVEIEFTKGGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  FIL
Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440


>gi|163803564|ref|ZP_02197432.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
 gi|159172651|gb|EDP57507.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
          Length = 443

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K  TSNTR+ FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQTFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ ++++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKMVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VID
Sbjct: 362 EEVDVEFTEDGITKIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKGGEKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD   + D+  FIL
Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443


>gi|301155383|emb|CBW14849.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus parainfluenzae T3T1]
          Length = 444

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAKA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  +F + +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  +TV ID
Sbjct: 363 EGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVSEALGEVIENEDLSRFIL 444


>gi|156973044|ref|YP_001443951.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|166221616|sp|A7MWJ3|HSLU_VIBHB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|156524638|gb|ABU69724.1| hypothetical protein VIBHAR_00723 [Vibrio harveyi ATCC BAA-1116]
          Length = 443

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K  TSNTR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYIALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VI+
Sbjct: 362 ESVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD   + D+  FIL
Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443


>gi|329298186|ref|ZP_08255522.1| ATP-dependent protease ATP-binding subunit HslU [Plautia stali
           symbiont]
          Length = 444

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/443 (50%), Positives = 307/443 (69%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKKAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+                S  R+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAAVPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           D+I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM 
Sbjct: 302 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALMG 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTED I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   +++ I
Sbjct: 362 TEGVNVEFTEDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  +  D+  FIL
Sbjct: 422 DAEYVGQHLDELVANEDLSRFIL 444


>gi|323700573|ref|ZP_08112485.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           ND132]
 gi|323460505|gb|EGB16370.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans ND132]
          Length = 461

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/461 (48%), Positives = 316/461 (68%), Gaps = 31/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD+YIIGQ+ AKR VAIA+RNRWRRQQL  +LRDE+ PKNI+L+GPTGVG
Sbjct: 3   NLTPREIVSELDKYIIGQEAAKRMVAIAMRNRWRRQQLDPELRDEIAPKNIILMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA  PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+   ++VR +
Sbjct: 63  KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122

Query: 126 ASINAEERILDALV-GKTATSN------------------------TREVFRKKLRDGEI 160
           A  NAEER+LD L+ GK                             TRE FR+  R G++
Sbjct: 123 AEKNAEERLLDLLLPGKKPQPGGAMGFFQGGQDGAVEKIEPPREDATREKFRQMFRAGQL 182

Query: 161 SDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            ++E++++V   + + +    IPG   +G  NL   FS  M  G++K  +M ++  Y  L
Sbjct: 183 DEREVEMQVTVQSGASVEIMAIPGMEEMGS-NLQNAFSN-MFPGKRKARKMKIKDAYQLL 240

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLL 276
           + +E+D+LID DTV+  + + VE  GI+F+DE DKI +R    G G   VSREGVQRDLL
Sbjct: 241 IDEEADKLIDPDTVNELARERVEQQGILFIDEMDKIASRHDQMGGGSADVSREGVQRDLL 300

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R  L SL+K +F  
Sbjct: 301 PIVEGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREELASLHKEEFYK 360

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+  + L +QYK L++TEG+ +D+T ++++ +A +A  +N    +IGARRL T+ME++
Sbjct: 361 ILTEPRNALTVQYKALLQTEGVTVDYTREALEEIAVMAEKINEETENIGARRLYTIMEKI 420

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L ++S+ A D     VVID +YV   +G+   + D+  +IL
Sbjct: 421 LANLSYEAPDKSGSQVVIDRDYVVAQLGEVIEDRDLSRYIL 461


>gi|317401423|gb|EFV82056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Achromobacter
           xylosoxidans C54]
          Length = 444

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/442 (51%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV     S+           R+ FRK+LR+G+I D EI+IEVA T+  
Sbjct: 125 AEDAAEDRILDALVPPPRGSSGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQTAPH 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FTE+ +  LA++A  +N T  +IGARRL TVME++L+++SF A+   +KTV ID
Sbjct: 363 EDVQLEFTEEGVRRLAELAYEVNETTENIGARRLYTVMEKLLDELSFDATSSTDKTVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444


>gi|227082790|ref|YP_002811341.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2]
 gi|298500508|ref|ZP_07010312.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK
           757]
 gi|254802322|sp|C3LSA3|HSLU_VIBCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|227010678|gb|ACP06890.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2]
 gi|297540677|gb|EFH76734.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK
           757]
          Length = 443

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+           L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREG QRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGGQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VID
Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  FIL
Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443


>gi|269959684|ref|ZP_06174064.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi
           1DA3]
 gi|269835607|gb|EEZ89686.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi
           1DA3]
          Length = 443

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            K  TSNTR++FRKKLR+G++ DKEIDI+VA     
Sbjct: 124 EEQAEERILDTLLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIDIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VI+
Sbjct: 362 ENVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD   + D+  FIL
Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443


>gi|292492404|ref|YP_003527843.1| heat shock protein HslVU, ATPase HslU [Nitrosococcus halophilus
           Nc4]
 gi|291580999|gb|ADE15456.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           halophilus Nc4]
          Length = 441

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/440 (51%), Positives = 306/440 (69%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV ELD+YIIGQ  AKRAVA+ALRNRWRR+QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   LTPRQIVQELDKYIIGQTAAKRAVAVALRNRWRRRQLSEELRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+D+AI + RE    +VR++A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLLDIAIKMTREQEMAKVRDRA 123

Query: 127 SINAEERILDALV-------GKTAT--SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERIL+AL+       G+T    S+TR+ FRK LR+G++ D+EI++E+A  S  + 
Sbjct: 124 EDAAEERILNALLPPSRAMAGETTEGDSSTRQKFRKMLREGKLDDREIEVELAAVSMGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F  + GS  + +     +  +  L  +E+ +LI+ + +   +
Sbjct: 184 IMAPPGMEEM-TSQLQNMFQHLGGSRTRTRRLRVRE-AFKLLTEEEAGKLINDEDLKARA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +  VE  GIVFLDE DKI  R   +G  VSREGVQRDLLP+VEGS+VSTK+G + TDHIL
Sbjct: 242 LDNVEQNGIVFLDEMDKIAKRSEVSGTDVSREGVQRDLLPMVEGSTVSTKHGMVRTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QY  L+KTEG
Sbjct: 302 FIASGAFHLAKPSDLIPELQGRLPIRVELSALSVNDFVRILTEPSASLTEQYTALLKTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L FTE+ I  +A +A ++N    +IGARRL TVMER+LE +SF A     + V IDA 
Sbjct: 362 VSLYFTENGIARIAQIAWHVNERTENIGARRLHTVMERLLEGLSFEADAHASREVTIDAA 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   + D   + D+  +IL
Sbjct: 422 YVDTQLADLAQDEDLSRYIL 441


>gi|325577182|ref|ZP_08147666.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392]
 gi|325160764|gb|EGC72885.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392]
          Length = 444

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAKA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDTAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  +F + +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TDH
Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  +TV ID
Sbjct: 363 EGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 423 AAYVIEALGEVIENEDLSRFIL 444


>gi|134297266|ref|YP_001121001.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           vietnamiensis G4]
 gi|166221471|sp|A4JIR3|HSLU_BURVG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134140423|gb|ABO56166.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           vietnamiensis G4]
          Length = 447

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/446 (49%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQSKAKKAVAVALRNRWRRQQVTEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +Q+    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIQEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + LDF  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLDFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAQYVDRALGEVSQDEDLSRYVL 447


>gi|239994471|ref|ZP_04714995.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           ATCC 27126]
          Length = 442

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/441 (51%), Positives = 309/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFRA 123

Query: 127 SINAEERILDALVG--KTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+   + A  N        TR+ FRKKLR G++ DKEI+I+VA     +
Sbjct: 124 EEAAEERILDVLLPPPEDAWGNKENVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + GS +KKK ++ +++ +  L+ +E+ RL++ + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKEK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  R+  +   VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 242 AIESVEQHGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LMKTE
Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTHQYIALMKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + F +  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VIDA
Sbjct: 362 GVDISFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+       D+  FIL
Sbjct: 422 DYVNSHLETLVDNEDLSRFIL 442


>gi|322834997|ref|YP_004215024.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602]
 gi|321170198|gb|ADW75897.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602]
          Length = 444

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/443 (50%), Positives = 303/443 (68%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDEAQEPSAARQNFRKKLREGQLDDKEIEISLASGPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F + MG+ ++K  ++ +++    L+ +E+ +L++ + +  
Sbjct: 184 VEIMSPPGMEEM-TNQLQSMF-QSMGAQKQKPRKLKIKEALKLLIEEEAAKLVNPEDLKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  + P+DL+PE+QGR P+RV L++L+  DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALSTEDFERILTEPSASLTHQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ AS+    ++ I
Sbjct: 362 TEGVTIDFTADGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASESNGISINI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+    ++ D+  FIL
Sbjct: 422 DADYVRSHLDQLVADEDLSRFIL 444


>gi|218778264|ref|YP_002429582.1| ATP-dependent protease ATP-binding subunit HslU [Desulfatibacillum
           alkenivorans AK-01]
 gi|226704520|sp|B8FH26|HSLU_DESAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218759648|gb|ACL02114.1| heat shock protein HslVU, ATPase subunit HslU [Desulfatibacillum
           alkenivorans AK-01]
          Length = 457

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/457 (50%), Positives = 306/457 (66%), Gaps = 27/457 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  PREIV ELD+YIIGQ  AKR VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   DLKPREIVQELDKYIIGQDHAKRFVAIALRNRWRRRQVPQDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA  PF+KVE TKFTE+GYVGR+VE +IRDLV+V +N+VRE   DEV   
Sbjct: 63  KTEISRRLAKLADVPFLKVEATKFTEVGYVGRDVESMIRDLVEVTVNMVREKEEDEVALP 122

Query: 126 ASINAEERILDALV-----------------------GKTATSNTREVFRKKLRDGEISD 162
           A   AEERILD L+                       G +   +TRE  RK L  G+  D
Sbjct: 123 AMKAAEERILDILLPPRRETQPFADAEGETTLEIVTRGDSNQDSTREKLRKMLHSGKFDD 182

Query: 163 KEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + +D+E+ + ++ +   F   G   VG  N  ++   +M    KK+ ++ V +    L +
Sbjct: 183 RYVDLEINERNTPVVEIFSNMGMEEVG-FNFKDMLGGLMPKNTKKR-KVKVSEAMEILTQ 240

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280
            E+  LIDM+ V + ++  VE  GI+FLDE DKI V    G G  VSREGVQRDLLP+VE
Sbjct: 241 QEAQGLIDMEKVVKKALSRVEESGIIFLDEIDKIAVGGGKGQGPDVSREGVQRDLLPIVE 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V+TKYG + TDHILFIASGAFH+++P+DL PE+QGRFP+RV L SL + DF  ILT+
Sbjct: 301 GTTVNTKYGMVKTDHILFIASGAFHMTKPSDLTPELQGRFPIRVELDSLTEHDFMRILTE 360

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ ++LQY+EL+KTEG+ L FT+DS+  +A +A  +N    +IGARRL TVME +LEDI
Sbjct: 361 PKNAIMLQYQELLKTEGVELVFTQDSVAEIASIAKEVNDRTENIGARRLHTVMECLLEDI 420

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + A ++ EK + I AE VR  +     + D+  +IL
Sbjct: 421 LYDAPEVPEKKITIGAEMVRAKLESIKEDEDLSRYIL 457


>gi|86147299|ref|ZP_01065613.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218710819|ref|YP_002418440.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio splendidus
           LGP32]
 gi|254802323|sp|B7VLM7|HSLU_VIBSL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|85834864|gb|EAQ53008.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218323838|emb|CAV20199.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           splendidus LGP32]
          Length = 446

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/445 (51%), Positives = 310/445 (69%), Gaps = 16/445 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYRA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA  
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F  + G  +KK+ +M ++  +  L  +E+ +L++ + 
Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGDTKKKR-KMKIKDAFKALTEEEAAKLVNQEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + 
Sbjct: 242 LKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  L
Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTE + ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D     +
Sbjct: 362 MKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSKL 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           VID  YV   +G+   + D+  FIL
Sbjct: 422 VIDEAYVISKLGELVEDEDLSRFIL 446


>gi|269964741|ref|ZP_06178979.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio
           alginolyticus 40B]
 gi|269830640|gb|EEZ84861.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio
           alginolyticus 40B]
          Length = 443

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   D+V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMDKVKFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+           L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VID
Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           + YV+  +GD   + D+  FIL
Sbjct: 422 SAYVKARLGDTIEDEDLSRFIL 443


>gi|152998125|ref|YP_001342960.1| ATP-dependent protease ATP-binding subunit HslU [Marinomonas sp.
           MWYL1]
 gi|226704529|sp|A6W2U6|HSLU_MARMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150839049|gb|ABR73025.1| heat shock protein HslVU, ATPase subunit HslU [Marinomonas sp.
           MWYL1]
          Length = 440

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/440 (52%), Positives = 310/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP ++R E+ PKNIL++GPTGVG
Sbjct: 3   SMTPRETVNALDNHIIGQQKAKRAVAIALRNRWRRMQLPEEMRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE    ++R +
Sbjct: 63  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETAKLRHK 122

Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AE+RILD L+            ++TR+ FRKKLR+G++ DKEIDI+VAD+   +  
Sbjct: 123 AEDAAEDRILDVLLPPARGGDPELEDNSTRQTFRKKLREGQLDDKEIDIDVADSPMGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  LFS   GS + KK +M V+  + ++  +E+ +L++ + +   ++
Sbjct: 183 MTPPGMEEM-TSQLQNLFSS-FGSQKTKKRKMKVKDAFRQVRDEEAAKLVNEEELKARAV 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VE  GIVFLDE DK+      +G  VSREGVQRDLLPLVEG +VSTKYG I TDHILF
Sbjct: 241 EAVEQNGIVFLDEIDKVAKSSERSGGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L +L   DF+ IL +   +L  QY  L KTE I
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELDALTVDDFKRILVEPSMSLTKQYVALAKTEHI 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+FTE+ I  +A++A  +N    +IGARRL TV+ER+LE++S+SASD+  ++TV I A 
Sbjct: 361 NLNFTEEGIHRIAEIAFQVNERTENIGARRLHTVLERLLEEVSYSASDMPNDQTVDITAA 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   +G+     D+  +IL
Sbjct: 421 YVDEQLGEIAENEDLSQYIL 440


>gi|87309985|ref|ZP_01092118.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina
           DSM 3645]
 gi|87287231|gb|EAQ79132.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina
           DSM 3645]
          Length = 448

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/447 (47%), Positives = 311/447 (69%), Gaps = 22/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ LD+ I+GQ DAKRAVA+A+RNRWRR+QLP DL+ E+ PKNI+++GPTGVGK
Sbjct: 8   LTPREIVAALDQNIVGQADAKRAVAVAVRNRWRRKQLPEDLQAEIAPKNIMMMGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TK+TE+GY GR+VE ++R+LV+ +I +VRE  R  V + A
Sbjct: 68  TEIARRLAKLTGAPFLKVEATKYTEVGYYGRDVESMVRELVETSIAMVRERERKNVEKDA 127

Query: 127 SINAEERILDALVGKTAT--------------SNTREVFRKKLRDGEISDKEIDIEVADT 172
            +  EER+LD LV +  +                TRE FR  LR GE+  +++++ +   
Sbjct: 128 VVRVEERLLDLLVPRPVSYEMASEEEEATDHYERTRERFRGMLRGGELEQRKVELTIEQK 187

Query: 173 SSDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           S+ +    + GG  +  ++  L  +F K++     ++  +++ +    L+  ES+ L+D 
Sbjct: 188 SAPM----MIGGMGLEQMDVDLQGMFEKILPKNSTRR-ELTIAQARGVLLEQESESLLDK 242

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +++ +I++ EN GI+FLDE DKIVA D  +G  VSR+GVQRDLLP+VEG++V TK+G 
Sbjct: 243 EAINQAAIELAENLGIIFLDELDKIVATDGKSG-DVSRQGVQRDLLPIVEGTTVQTKHGY 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           ++TDH+LFIA+GAFH S P++L+PE+QGRFP+RV L  L K DF  ILT+  ++L +QYK
Sbjct: 302 VSTDHVLFIAAGAFHKSSPSELMPELQGRFPIRVELNDLTKDDFVRILTEPNASLTMQYK 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  EG+ +DFTED+I+ LA+ A  +N T  +IGARRL T+MER+LE++SF A D+  K
Sbjct: 362 ALLAAEGLKIDFTEDAIEELAEFAFQVNQTTQNIGARRLYTIMERLLEELSFEAPDMTTK 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V IDAEYVR  +     + D+  FIL
Sbjct: 422 KVTIDAEYVRERLTKVTQDEDLSRFIL 448


>gi|84390847|ref|ZP_00991539.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
 gi|84376650|gb|EAP93527.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
          Length = 446

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/445 (50%), Positives = 310/445 (69%), Gaps = 16/445 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYRA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA  
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F  + G  +KK+ +M ++  +  L  +E+ +L++ + 
Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGDTKKKR-KMKIKDAFKALTEEEASKLVNQEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + 
Sbjct: 242 LKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  L
Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTE + ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D     +
Sbjct: 362 MKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSKL 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +ID  YV   +G+   + D+  FIL
Sbjct: 422 LIDEAYVISKLGELVEDEDLSRFIL 446


>gi|332308411|ref|YP_004436262.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175740|gb|AEE24994.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 443

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+           K     TR+ FRKKLR+G++ DKEI+I+VA     +
Sbjct: 124 EEAAEERILDVLLPPAENQWGEKEKNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + GS +KKK ++ +++ +  L+ +E+ RL++ + +  +
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKAN 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ +E  GIVF+DE DKI  R+  N  G VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+KT
Sbjct: 302 ILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAEDFIRILTEPNASLTEQYIALLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I+ +A  A  +N    +IGARRL TVMER++E+ISF AS+   + + +D
Sbjct: 362 EGVEVEFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKNGEQLTVD 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+       D+  FIL
Sbjct: 422 AKYVNDHLEMLVENEDLSRFIL 443


>gi|254229426|ref|ZP_04922841.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25]
 gi|262392523|ref|YP_003284377.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           Ex25]
 gi|151937997|gb|EDN56840.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25]
 gi|262336117|gb|ACY49912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           Ex25]
          Length = 443

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+ ++ ++     L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKR-KLKIKDAMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VID
Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +GD   + D+  FIL
Sbjct: 422 AAYVKERLGDTIEDEDLSRFIL 443


>gi|255020689|ref|ZP_05292751.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969925|gb|EET27425.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Acidithiobacillus caldus ATCC 51756]
          Length = 443

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/439 (50%), Positives = 310/439 (70%), Gaps = 9/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD+YI+GQ +AKRAVA+ALRNRWRR Q+  DLR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPREIVQELDKYIVGQDEAKRAVAVALRNRWRRAQVSGDLRAEITPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL ++A+N+VR  R+  V  +A
Sbjct: 66  TEIARRLAQLAKAPFIKVEATKFTEVGYVGKDVESIIRDLAEIAVNLVRNERQQAVGLRA 125

Query: 127 SINAEERILDALV-GKTATS------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              AEERILDAL+ G    S      NTR+ FRK LR+G++ DKEIDIE+  +      F
Sbjct: 126 EELAEERILDALLPGPRDASLPRQDENTRQKFRKMLREGKLDDKEIDIEIRASKGPGVEF 185

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L +LF++ M     ++ ++SV +    L  +E+ +L++ D V   +++
Sbjct: 186 MAPPGMEEMGAQLRDLFAR-MAPHNTQRRKVSVAEARTLLRDEEAAKLVNEDEVRSTALE 244

Query: 240 MVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++  GIVF+DE DK+ +R++  +G  +SREGVQRDLLPLVEGS+VST+YG + TDHILF
Sbjct: 245 RLQADGIVFIDEIDKVTSRNNAQSGPDISREGVQRDLLPLVEGSNVSTRYGVVKTDHILF 304

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D   IL + E+ L+ QY  L+  + +
Sbjct: 305 IASGAFHLSKPSDLIPELQGRLPIRVELQALSAADLERILREPENALVRQYTALLAADEV 364

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D I  +A++A  +N  V +IGARRL TVMER+LED++F A D     + ID +Y
Sbjct: 365 ELRFTDDGIRRIAEIAQQVNEGVENIGARRLHTVMERLLEDLAFRAPDAGIGEITIDTDY 424

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +GD  ++ D+  +IL
Sbjct: 425 VNARLGDLAADEDLSRYIL 443


>gi|332995304|gb|AEF05359.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas sp.
           SN2]
          Length = 442

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 305/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +A
Sbjct: 64  TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKETEMKKVKFRA 123

Query: 127 SINAEERILDALV-------GK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+       GK        TR+ FRKKLR G++ DKEI+I+VA     +
Sbjct: 124 EEAAEERILDVLIPPPEDAWGKKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + GS +KKK ++ ++     L+ +E+ RL++ + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKDALKMLVEEEAARLVNQEDLKEK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  R+      VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 242 AIESVEQHGIVFVDEIDKICKREGNTSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QYK LM TE
Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALEVGDFKRILTEPNASLTEQYKALMLTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ +DF E  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VID 
Sbjct: 362 GVNIDFVESGIQRIAEAAWRVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDE 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+       D+  FIL
Sbjct: 422 DYVNSHLESLVENEDLSRFIL 442


>gi|91226628|ref|ZP_01261352.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|91189102|gb|EAS75384.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
          Length = 443

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA     
Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +KK+ ++ ++     L  +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKR-KLKIKDAMKALAEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VID
Sbjct: 362 EDVEIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           + YV+  +GD   + D+  FIL
Sbjct: 422 SAYVKARLGDTIEDEDLSRFIL 443


>gi|109900490|ref|YP_663745.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           atlantica T6c]
 gi|123064029|sp|Q15N47|HSLU_PSEA6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109702771|gb|ABG42691.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoalteromonas
           atlantica T6c]
          Length = 443

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYRA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+           +     TR+ FRKKLR+G++ DKEI+I+VA     +
Sbjct: 124 EEAAEERILDVLLPPAENQWGEKEQNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + GS +KKK ++ +++ +  L+ +E+ RL++ + +  +
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKAN 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ +E  GIVF+DE DKI  R+  N  G VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+KT
Sbjct: 302 ILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAGDFIRILTEPNASLTEQYIALLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT+D I+ +A  A  +N    +IGARRL TVMER++E+ISF AS+   + + +D
Sbjct: 362 EGVDVDFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKSGEQLTVD 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+       D+  FIL
Sbjct: 422 AKYVNDHLEMLVENEDLSRFIL 443


>gi|254796566|ref|YP_003081402.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           risticii str. Illinois]
 gi|254589803|gb|ACT69165.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           risticii str. Illinois]
          Length = 477

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/450 (49%), Positives = 319/450 (70%), Gaps = 17/450 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            ++ +P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR  +P  L DE++PKNIL++GPTG
Sbjct: 29  AYSAAPKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNVPKPLHDEIIPKNILMIGPTG 88

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+  V++ +R +  
Sbjct: 89  VGKTEIARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFS 148

Query: 124 EQASINAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVAD 171
           ++A  +A+E+ILDALVGK  T +             R VF KKL +G++ D EI+I V D
Sbjct: 149 KEAEESAKEKILDALVGKKNTEDDDLVDGEDEKHDARAVFEKKLDEGKLDDAEIEINVRD 208

Query: 172 TSSDI-SNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRL 227
              ++    D+PG  G  +G++N+ ++ SKV G+ +K K +    K   +++ D E + L
Sbjct: 209 IPQNVFPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDL 268

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D D + ++++ +V N G+VF+DE DKI AR    G  V+REGVQRDLLPL+EG++V TK
Sbjct: 269 FDEDAIIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTK 327

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+  D   ILT+TES+L+ 
Sbjct: 328 YGVVKTDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLK 387

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D 
Sbjct: 388 QYCALLETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDN 447

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             KT  ID EYV  H+     + D+  FIL
Sbjct: 448 VGKTFSIDREYVDKHLQTIIKKLDLSKFIL 477


>gi|310822320|ref|YP_003954678.1| hslu-like protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395392|gb|ADO72851.1| HslU-like protein [Stigmatella aurantiaca DW4/3-1]
          Length = 465

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/457 (47%), Positives = 318/457 (69%), Gaps = 27/457 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQ++  DLR+E+ PKNI+++GPTGVGK
Sbjct: 10  FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE   ++V+ +A
Sbjct: 70  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 129

Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164
              AE+R+++ L G                           + RE  R +LR G + D+E
Sbjct: 130 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 189

Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +D+E +D++   + NF   G   VG+ NL +LF  + G  R ++ ++ V +    L ++E
Sbjct: 190 VDVETSDSAPTFLRNFTGHGMEEVGV-NLQDLFKNMPGMNRTRRRKVRVPEALRLLQQEE 248

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVE 280
           + +L+D D V R+++   E+ GI+F+DE DKI +R+ G   +G  VSREGVQRD+LP+VE
Sbjct: 249 AAKLVDTDRVTREALVRAESSGIIFIDEIDKIASREGGGKGSGPDVSREGVQRDILPIVE 308

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+  D   IL +
Sbjct: 309 GSTINTKYGQVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILRE 368

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             ++LI QY  L+ TEG+ L+FT+D+++ +A +A   N    +IGARRL TV+ER+L+++
Sbjct: 369 PRNSLIRQYTALLATEGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEV 428

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF AS++ +K + +DA YVR  +     + D+  +IL
Sbjct: 429 SFGASEMGQKALKVDAAYVRERLASIVQDEDLSRYIL 465


>gi|52840878|ref|YP_094677.1| ATP-dependent protease ATP-binding subunit HslU [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148360705|ref|YP_001251912.1| ATP dependent Hsl protease ATP binding subunit [Legionella
           pneumophila str. Corby]
 gi|52627989|gb|AAU26730.1| ATP dependent Hsl protease, ATP binding subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148282478|gb|ABQ56566.1| ATP dependent Hsl protease, ATP binding subunit [Legionella
           pneumophila str. Corby]
          Length = 447

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++  P  LR+E+MPKNIL++GPTGV
Sbjct: 9   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 67

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V  
Sbjct: 68  GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 127

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T   I
Sbjct: 128 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 187

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + +   
Sbjct: 188 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 245

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE  GIVF+DE DKI  R D+ +G  VSREGVQRDLLPLVEG++VSTKYG + +DH
Sbjct: 246 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 305

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM+T
Sbjct: 306 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 365

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV +D
Sbjct: 366 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 425

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  ++G   ++ D+  +IL
Sbjct: 426 KAYVDKNLGQLIADEDLARYIL 447


>gi|54293625|ref|YP_126040.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila
           str. Lens]
 gi|54296664|ref|YP_123033.1| ATP-dependent protease ATP-binding subunit HslU [Legionella
           pneumophila str. Paris]
 gi|296106229|ref|YP_003617929.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|62286752|sp|Q5WYQ8|HSLU_LEGPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286755|sp|Q5X7B0|HSLU_LEGPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286761|sp|Q5ZXU0|HSLU_LEGPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|53750449|emb|CAH11843.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila str. Paris]
 gi|53753457|emb|CAH14912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila str. Lens]
 gi|158512135|gb|ABW69096.1| heat shock protein ATPase subunit [Legionella pneumophila]
 gi|295648130|gb|ADG23977.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 441

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++  P  LR+E+MPKNIL++GPTGV
Sbjct: 3   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V  
Sbjct: 62  GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 121

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T   I
Sbjct: 122 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 181

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + +   
Sbjct: 182 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 239

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE  GIVF+DE DKI  R D+ +G  VSREGVQRDLLPLVEG++VSTKYG + +DH
Sbjct: 240 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 299

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM+T
Sbjct: 300 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 359

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV +D
Sbjct: 360 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 419

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  ++G   ++ D+  +IL
Sbjct: 420 KAYVDKNLGQLIADEDLARYIL 441


>gi|292670831|ref|ZP_06604257.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541]
 gi|292647452|gb|EFF65424.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541]
          Length = 464

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/459 (49%), Positives = 320/459 (69%), Gaps = 33/459 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV ELD+YI+GQ +AKR+VA+ALRNRWR +QL A+LRD+++PKNIL++G TGVGKT
Sbjct: 10  TPREIVVELDKYIVGQHEAKRSVAVALRNRWRSRQLDAELRDDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR+ + +EV+E+A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRQQKIEEVQEKAE 129

Query: 128 INAEERILDALVG-KTATSNT------------------------REVFRKKLRDGEISD 162
            NAEER++D  V  +  +SN                         RE  RK+LR GE+ D
Sbjct: 130 ENAEERLIDVFVPVQKKSSNPLGSLFSSEQEEKIEAQEPPKYQAGREWVRKRLRSGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             I+I+V +++  +    +  G+S+  +  NL  +  K++   R +K +++V +      
Sbjct: 190 DLIEIDVEESARPMGG--MFAGSSLESMSDNLQSMIGKLVPK-RHRKRKVTVNQARKIFA 246

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPL 278
            +E+D+L+DMD V  ++++  E  GIVFLDE DK VA  SG+  G  +SREGVQRD+LP+
Sbjct: 247 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDK-VAVSSGHSTGADISREGVQRDILPI 305

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  IL
Sbjct: 306 VEGSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERIL 365

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ LI QY  L+  EG+ L F ED++  LA++A  +N    DIGARRL T++E++LE
Sbjct: 366 TEPKNALIKQYSALLGVEGVSLHFEEDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLE 425

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++SF+A DL+EK +VID  YV   + D   + D+  FIL
Sbjct: 426 EVSFNAPDLKEKEIVIDTAYVDRCLADIAGDHDVSRFIL 464


>gi|307609439|emb|CBW98929.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila 130b]
          Length = 439

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++  P  LR+E+MPKNIL++GPTGV
Sbjct: 1   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 59

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V  
Sbjct: 60  GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 119

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T   I
Sbjct: 120 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 179

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + +   
Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 237

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE  GIVF+DE DKI  R D+ +G  VSREGVQRDLLPLVEG++VSTKYG + +DH
Sbjct: 238 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM+T
Sbjct: 298 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 357

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV +D
Sbjct: 358 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 417

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  ++G   ++ D+  +IL
Sbjct: 418 KAYVDKNLGQLIADEDLARYIL 439


>gi|149173422|ref|ZP_01852052.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148847604|gb|EDL61937.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 454

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/454 (47%), Positives = 314/454 (69%), Gaps = 24/454 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD++I+GQ DAKRAVAIALRNRWR QQLP +LR+E+ PKNI+++GPTGVG
Sbjct: 3   ELTPRQIVAELDKHIVGQDDAKRAVAIALRNRWRWQQLPDELRNEITPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TK+TE+GY GR+VE ++RDLVD A N+VRE +R EV ++
Sbjct: 63  KTEITRRLAKLINAPFIKVEATKYTEVGYYGRDVESMVRDLVDSAKNLVREKKRVEVVDK 122

Query: 126 ASINAEERILDALV---------------GKTATSN-----TREVFRKKLRDGEISDKEI 165
           A +  EER+LD L+               GK   ++     TR+ FRK L  G + +KE+
Sbjct: 123 AKVRVEERLLDLLIPRPEWEASYSESTEEGKEENASERYERTRDKFRKMLSQGALEEKEV 182

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I +   SS +  F   G   + + +L  +F ++M    K + +MSV++    L+  E +
Sbjct: 183 EISIDAKSSPVQVFSNMGMDQMDV-DLQGMFERIMPQQSKHR-KMSVKEARGVLLEQEVE 240

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
            L+D D +  +++Q+ E  GIVF+DE DKI   + G   G  VSR+GVQRDLLP+VEG++
Sbjct: 241 GLMDKDAIAEEAVQLAERSGIVFIDELDKICTSEEGGNRGGDVSRQGVQRDLLPIVEGTT 300

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V T+ GS+ TD++LFIA+GAFH ++P+DL+PE+QGRFP+RV L+ L + DF  ILT+  S
Sbjct: 301 VQTRSGSVKTDYMLFIAAGAFHRTKPSDLMPELQGRFPIRVELQELTRDDFLRILTEPTS 360

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           ++ +QY+ L++TEG+ + F +D ++ LA +A ++N T  +IGARRL T++ER+LE++SF 
Sbjct: 361 SITMQYQALLETEGVKIKFEQDGLEELAKIAFDVNQTTQNIGARRLHTILERLLEEVSFE 420

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A DL+ K +VID  YV+  +     + D+  FIL
Sbjct: 421 APDLKTKKIVIDVPYVQQKLHSIVEDEDLSKFIL 454


>gi|317484401|ref|ZP_07943317.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6]
 gi|316924353|gb|EFV45523.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6]
          Length = 433

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/432 (49%), Positives = 306/432 (70%), Gaps = 3/432 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+YIIGQ  AKR VAIA+RNRWRRQ+L A+LR+E+ P+NI+++GPTGVGK
Sbjct: 4   LTPREIVAELDKYIIGQNQAKRMVAIAVRNRWRRQRLAAELRNEVAPRNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TK+TE+GYVGR+VE +IRDL+++ IN+VR    ++V+ +A
Sbjct: 64  TEIARRLAKLCSAPFIKVEATKYTEVGYVGRDVESMIRDLMEIGINLVRAEEAEKVKGRA 123

Query: 127 SINAEERILDALV-GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
              AEER+LD L+       NTRE  R+  R G + D+E++ EV + S  I    +PG  
Sbjct: 124 EAAAEERLLDLLLPSGDGRENTREKLRELFRQGFLDDREVEFEVKEQSQPIGMLGVPGME 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +G   +   FSK+      +K +M V   +  L+ DES +L+D D +   + + VE  G
Sbjct: 184 QLGD-QMKGAFSKLFPQKTHRK-KMKVGAAWRHLIEDESSKLVDEDKITDLARERVEQMG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVF+DE DK+ +        +SREGVQRDLLP+VEGS+V+TKYG +NTDHILFIA+GAFH
Sbjct: 242 IVFIDEIDKLASGSQQRSADISREGVQRDLLPIVEGSAVNTKYGLVNTDHILFIAAGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +S+P+DL PE+QGRFP+R  L++L K +F  ILT+  ++L  QY+ +++TEG+ ++FT+D
Sbjct: 302 LSKPSDLFPELQGRFPLRAELEALGKEEFYRILTEPHNSLTRQYEAMLETEGVRIEFTDD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            +  +A  A ++N+   +IGARRL T+ME++L DISF AS+ +  T+VID E+V   + D
Sbjct: 362 GLREIAAFAEDVNTRTENIGARRLHTIMEKILADISFDASEKRGSTLVIDREHVVAQLAD 421

Query: 426 FPSETDMYHFIL 437
             ++ ++  FIL
Sbjct: 422 VRADAELSRFIL 433


>gi|254498810|ref|ZP_05111521.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii
           LLAP12]
 gi|254351974|gb|EET10798.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii
           LLAP12]
          Length = 438

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/441 (52%), Positives = 304/441 (68%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++  P  LR+E+MPKNIL++GPTGV
Sbjct: 1   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIQDPV-LRNEIMPKNILMIGPTGV 59

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+AI   RE    +V  
Sbjct: 60  GKTEIARRLAKLAHAPFIKVEATKFTEVGYVGRDVDSILRDLADIAIKQEREWAMKKVEH 119

Query: 125 QASINAEERILDALV----GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+    G   +S+     R+VFRK+LR+G + + EI+IEV+ T   I
Sbjct: 120 LAEDAAEERILDVLLPPARGSLTSSDKDSTARQVFRKQLREGLLDENEIEIEVSATPVGI 179

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V G+ R K  +M++ K    L  +E+ +LI+ D +   
Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GTHRTKTRKMTIAKAMKILREEEASKLINEDDIKVR 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE  GIVF+DE DK+  R  G G  VSREGVQRDLLPLVEG++VSTKYG I +DHI
Sbjct: 238 AIESVEQNGIVFIDELDKVAKRSEGGGGDVSREGVQRDLLPLVEGTTVSTKYGMIKSDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM TE
Sbjct: 298 LFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMATE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   + V +D 
Sbjct: 358 GLTLSFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGEAVHVDK 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  ++G   ++ D+  +IL
Sbjct: 418 AYVEKNLGQLVADEDLARYIL 438


>gi|15825803|pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
          Length = 444

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 300/441 (68%), Gaps = 12/441 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL +GPTGVGKT
Sbjct: 5   TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A  +VR+    + R +A 
Sbjct: 65  EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAE 124

Query: 128 INAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S  
Sbjct: 125 DVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXG 184

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   +GS + KK +  ++     L+ DE+ +LI+ + + + 
Sbjct: 185 VEIXAPPGXEEXTNQLQSLFQN-LGSDKTKKRKXKIKDALKALIDDEAAKLINPEELKQK 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 244 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK L  TE
Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT D++  +A+ A  +N    +IGARRL TV ER+ + ISFSASD   +TV IDA
Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +G+     D+  FIL
Sbjct: 424 AYVADALGEVVENEDLSRFIL 444


>gi|332286549|ref|YP_004418460.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp.
           T7-7]
 gi|330430502|gb|AEC21836.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp.
           T7-7]
          Length = 443

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 305/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+ I+GQ  AKR+VA+ALRNRWRRQQ+P  LR+E++PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKNIVGQDRAKRSVAVALRNRWRRQQVPEPLRNEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLV++++   R+ +   VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLVEISVKQSRDVQMRRVRTQ 124

Query: 126 ASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AE+RILD L+              +N R+ FRK+LR+G++ D EI+IEVA  +  +
Sbjct: 125 AEDAAEDRILDVLISPARDAQGEPVREENNARQTFRKRLREGKLDDMEIEIEVAQLAPQM 184

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +G  +KK  +M+V++ +  L  +E+ R ++ D +   
Sbjct: 185 EIMAPPGMEEM-TEQLKGMFAG-LGRDKKKPKKMTVKEAFKLLTEEEAGRRVNEDELRTS 242

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++   E  GIVFLDE DKI  R   +G  VSR+GVQRDLLPLVEG++V+TKYG + TDHI
Sbjct: 243 AVSNAEQNGIVFLDEIDKIATRQEHSGGDVSRQGVQRDLLPLVEGTTVNTKYGVVKTDHI 302

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +SRP+DL+PE+QGRFP+RV L SL   DF  IL DT+S+L  QY  LM TE
Sbjct: 303 LFIASGAFQMSRPSDLIPELQGRFPIRVELDSLTAQDFVRILCDTDSSLTKQYHALMATE 362

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L FT++ I+ LA++A  +N    +IGARRL TVME++LED+SF A+     TV +DA
Sbjct: 363 DVALHFTDEGIERLAELAFEVNERTENIGARRLYTVMEKLLEDLSFDATSSSGTTVTVDA 422

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + +  S  D+  ++L
Sbjct: 423 AYVNDKLEETASSQDLARYVL 443


>gi|332532291|ref|ZP_08408171.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038158|gb|EGI74604.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/442 (50%), Positives = 314/442 (71%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLKEDLRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE +  + + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122

Query: 126 ASINAEERILDALV-------GKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+       G+T     S+TR+ FRKKLR+G++ DKEI+I++A    +
Sbjct: 123 AEEAAEERILDALLPPAKDQYGETQRDDNSSTRQAFRKKLREGQLDDKEIEIDLAQAQPN 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +  
Sbjct: 183 VEIMAPPGMEDM-TNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAAKLVNPEELKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH
Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAF +++P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KT
Sbjct: 301 MLFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F++D+I+ +A  A  +N    +IGARRL TVMER++E+IS+ AS+    ++VID
Sbjct: 361 EQVSIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+G    + D+  FIL
Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442


>gi|320539526|ref|ZP_08039193.1| molecular chaperone and ATPase component of HslUV protease
           [Serratia symbiotica str. Tucson]
 gi|320030379|gb|EFW12391.1| molecular chaperone and ATPase component of HslUV protease
           [Serratia symbiotica str. Tucson]
          Length = 444

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/443 (49%), Positives = 304/443 (68%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSHIIGQHKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++    A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRIQSIEKNHAHA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+                S  R+ FRKKLR+G++ DKEI++++A T  +
Sbjct: 124 EELAEKRILDVLIPPAKNNWGQLEEHKEPSAARQAFRKKLREGQLDDKEIELDLAATPIN 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +GS ++K  ++ +++ +  L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGSQKQKPRKLKIKEAFKLLVEEEAGKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE +GIVF+DE DKI  R +  +   VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGNQSSSPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK L+ 
Sbjct: 302 HILFITSGAFQTANPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALLG 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS++  +T+ I
Sbjct: 362 TEGVNIEFTTDGIRHIAEAAWQVNENTENIGARRLHTVLERLMEDISYDASEINGQTITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 422 DADYVRSHLDELVADEDLSRFIL 444


>gi|88607962|ref|YP_506072.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600131|gb|ABD45599.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           sennetsu str. Miyayama]
          Length = 472

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/450 (49%), Positives = 319/450 (70%), Gaps = 17/450 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            ++ +P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR  +P  L DE++PKNIL++GPTG
Sbjct: 24  AYSAAPKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNIPKPLHDEIIPKNILMIGPTG 83

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+  V++ +R +  
Sbjct: 84  VGKTEIARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFS 143

Query: 124 EQASINAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVAD 171
           ++A  +A+E+ILDALVGK  T +             R VF KKL +G++ D EI+I V +
Sbjct: 144 KEAEESAKEKILDALVGKKNTEDDDLADGEDEKHDARAVFEKKLDEGKLDDAEIEINVRE 203

Query: 172 TSSDI-SNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRL 227
              ++    D+PG  G  +G++N+ ++ SKV G+ +K K +    K   +++ D E + L
Sbjct: 204 LPQNVFPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDL 263

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D D + ++++ +V N G+VF+DE DKI AR    G  V+REGVQRDLLPL+EG++V TK
Sbjct: 264 FDEDAIIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTK 322

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+  D   ILT+TES+L+ 
Sbjct: 323 YGVVKTDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLK 382

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D 
Sbjct: 383 QYCALLETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDN 442

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             KT  ID EYV  H+     + D+  FIL
Sbjct: 443 VGKTFSIDREYVDKHLQTIIKKLDLSKFIL 472


>gi|315125398|ref|YP_004067401.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
 gi|315013911|gb|ADT67249.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
          Length = 442

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 311/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLNEDLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE +  + + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122

Query: 126 ASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L          V +   S+TR+ FRKKLR+G++ DKEIDI++A    +
Sbjct: 123 AEEAAEERILDVLLPPAKDQYGEVQRDENSSTRQSFRKKLREGQLDDKEIDIDLAQAQPN 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +  
Sbjct: 183 IEIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH
Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAF +S+P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KT
Sbjct: 301 MLFIASGAFQMSKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F++D+I+ +A  A  +N    +IGARRL TVMER++E+IS+ AS+    ++VID
Sbjct: 361 EQVAIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+G    + D+  FIL
Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442


>gi|329900879|ref|ZP_08272628.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549352|gb|EGF33923.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 453

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/448 (50%), Positives = 313/448 (69%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ELD++++GQ +AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 8   MNMTPQEIVTELDKHVVGQANAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 67

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RES   +VR+
Sbjct: 68  GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRESEMRKVRD 127

Query: 125 QASINAEERILDALV---------------GKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +A   AE+RI+D LV                  A S TR+ FRK+LR+G + D +I+IEV
Sbjct: 128 RAGDAAEDRIIDILVPPARDFGIQPVATDGTPAAGSTTRQTFRKRLREGSLDDHQIEIEV 187

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            D+   +     PG   +    +  +FS V  + RKK  ++ V++    L+ +E+ +L++
Sbjct: 188 NDSGPQMDIMAPPGMEEM-TEQIKTMFSGV-SNNRKKMRKVKVKEALKLLVEEEAGKLLN 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D + + +I  VE  GIVFLDE DKI +R    G  VSR GVQRDLLPLVEG++V+TKYG
Sbjct: 246 EDELKQKAITNVEQNGIVFLDEIDKIASRSETGGAEVSRAGVQRDLLPLVEGTTVNTKYG 305

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L  QY
Sbjct: 306 MIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTRQY 365

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + + F++D I  LA++A ++N    +IGARRL TVME++LED+SF+A++   
Sbjct: 366 QALLSTENMTITFSDDGIRRLAEIAYSVNEKTENIGARRLYTVMEKLLEDMSFNATERSG 425

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV I A YV   +G      D+ H++L
Sbjct: 426 ETVNITAPYVDERLGALAVNEDLSHYVL 453


>gi|293602500|ref|ZP_06684946.1| ATP-dependent protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292819262|gb|EFF78297.1| ATP-dependent protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 444

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRQEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV           +   ++ R+ FRK+LR+G+I D EI+IEVA  +  
Sbjct: 125 AEDAAEDRILDALVPPARGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FT++ +  LA++A ++N T  +IGARRL TVME++L+++SF A+  Q+K V ID
Sbjct: 363 EDVQLEFTDEGVRRLAELAYDVNETTENIGARRLYTVMEKLLDELSFDATSSQDKHVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNSQLAEAASSQDLARYVL 444


>gi|239618025|ref|YP_002941347.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506856|gb|ACR80343.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia
           TBF 19.5.1]
          Length = 464

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/460 (48%), Positives = 319/460 (69%), Gaps = 33/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV ELD+YI+GQ +AKRAVA+ALRNR RRQ+LP D+R E++PKNIL++GPTGVG
Sbjct: 10  QLTPKKIVEELDKYIVGQAEAKRAVAVALRNRIRRQKLPEDVRKEIIPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L+ +PFIKVE T+FTE+GYVG+NV+ +IR+LV   +N+V++ +  EV E+
Sbjct: 70  KTEIARRLAELSKSPFIKVEATRFTEVGYVGKNVDSMIRELVAFGVNMVKQEKMKEVEEK 129

Query: 126 ASINAEERILDALV-------GKTAT---------------------SNTREVFRKKLRD 157
           A    E+RIL+ALV       G+                           RE +R+KLRD
Sbjct: 130 AKQFVEDRILEALVPGLKHRAGQPKNIFELFQGVPQQRISPEEAENLRRKREEYRQKLRD 189

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ + +I+IE+ +    +    IPG   +GI ++S +F  ++   RKKK RMSV +   
Sbjct: 190 GELENLQIEIELEEQPKQM--IMIPGMEEMGI-DMSGMFGDML-PKRKKKKRMSVAEARK 245

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+  ES++L+DMD V  ++I+ VEN GIVF+DE DK+ AR S +G  VSREGVQRDLLP
Sbjct: 246 VLLPIESEKLLDMDKVIAEAIERVENRGIVFIDEIDKVTARGS-HGPDVSREGVQRDLLP 304

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EG++++TKYG + TD ILFIA+GAFH+++P+DL+PE QGRFP+RV L  L + DF  I
Sbjct: 305 IIEGTTINTKYGPVRTDFILFIAAGAFHLAKPSDLIPEFQGRFPIRVELNPLTEQDFLRI 364

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  QYK L++TEGI L+FTE  +  +A VA +LN  + +IGARRL TV+E+VL
Sbjct: 365 LTEPKNAITKQYKALLETEGITLEFTEAGLKEIARVAHDLNERIENIGARRLYTVVEKVL 424

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+ISF A D+ E  V+I  +YV   I +  ++ D+  FIL
Sbjct: 425 EEISFEAPDVSEPKVIITEDYVNTRIKEILADEDLSAFIL 464


>gi|283853296|ref|ZP_06370546.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           FW1012B]
 gi|283571336|gb|EFC19346.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           FW1012B]
          Length = 459

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/458 (48%), Positives = 311/458 (67%), Gaps = 28/458 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVS+LD+Y+IGQ DAKR VAIA+RNRWRRQQ+   LRDE+ PKNI+++GPTGVG
Sbjct: 4   SMTPREIVSQLDKYVIGQNDAKRMVAIAMRNRWRRQQIEPGLRDEIAPKNIIMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   D V  +
Sbjct: 64  KTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRVAAK 123

Query: 126 ASINAEERILDALVGKT-------------------------ATSNTREVFRKKLRDGEI 160
           A   AEER+LD L+ ++                         A  +TRE  RK  R+G +
Sbjct: 124 AEKAAEERLLDLLLPESQRAGANPIPMPAALEAPAPAAEPSDANLSTREKLRKLWREGRL 183

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D+ + +EV+  +  +    +PG   +G     ++FSK M   RKK   M V+  Y  L+
Sbjct: 184 DDRLVPVEVSVPAPQVEMMSMPGMEEMGS-QFKDMFSK-MFPQRKKTRNMRVRDAYEVLL 241

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLV 279
           ++ESDRL+DMD V   + + VE  GI+F+DE DKI    SG +G  VSREGVQRDLLP+V
Sbjct: 242 QEESDRLVDMDKVSETAKERVEQTGIIFIDEIDKICGNKSGGSGPDVSREGVQRDLLPVV 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG  V+TK+G + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF  ILT
Sbjct: 302 EGCVVNTKHGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFYRILT 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L +QY+ L+ TEG+ L FT++++  +AD A  +N    +IGARRL T+ME++L D
Sbjct: 362 EPQNALTVQYRALLGTEGVDLTFTDEALREVADFARKVNEETENIGARRLYTIMEKILSD 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF ASD   + VV+D  YVR  + D   + D+  +IL
Sbjct: 422 LSFEASDQSGQAVVVDPAYVRDKLKDVAEDRDLSRYIL 459


>gi|330818651|ref|YP_004362356.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
 gi|327371044|gb|AEA62400.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
          Length = 447

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/446 (48%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK---------TATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
              AE+RILD L+ +         + T+N     TR+ FRK+LR+G + DKE+++++   
Sbjct: 124 QDQAEDRILDILLPQPRAVGFGSNSETANDDNNATRQTFRKRLREGALDDKEVELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    +  +FS + G G+K + ++ +++    L  +E+ +L++ + 
Sbjct: 184 QAGMDIMAPPGMEEM-TEQIRSMFSNI-GGGKKTRRKVKIKEALKLLSDEEAAKLLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++  G G VSR+GVQRDLLPLVEG++V+TKYG I
Sbjct: 242 VKTRAVQNVEQNGIVFLDEIDKIASRNNEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LED+SF+A +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGEA 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|197334659|ref|YP_002157073.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri
           MJ11]
 gi|238690269|sp|B5FBL8|HSLU_VIBFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|197316149|gb|ACH65596.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri
           MJ11]
          Length = 444

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFRA 123

Query: 127 SINAEERILDALV--GKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
             +AE+RILD L+   + A  N         TR+ FRKKLR+G++ DKEI+++VA     
Sbjct: 124 EEHAEDRILDILLPPARDAWGNNEEGDNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    KK +M +      L  +E  +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELKE 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN+GIVF+DE DKI    + +   VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFI SGAF +++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QY  L+ T
Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+   +++++D
Sbjct: 363 ENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIVD 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV   +G+  ++ D+  FIL
Sbjct: 423 AEYVSSRLGELVADEDLSRFIL 444


>gi|311109413|ref|YP_003982266.1| heat shock protein HslVU, ATPase HslU [Achromobacter xylosoxidans
           A8]
 gi|310764102|gb|ADP19551.1| heat shock protein HslVU, ATPase subunit HslU [Achromobacter
           xylosoxidans A8]
          Length = 444

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV           +   ++ R+ FRK+LR+G+I D EI+IEVA  +  
Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKPKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FTE+ +  LA++A  +N T  +IGARRL TVME++L+++SF A+   +K V ID
Sbjct: 363 EDLQLEFTEEGVRRLAELAFEVNETTENIGARRLYTVMEKLLDELSFDATASSDKNVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444


>gi|258404689|ref|YP_003197431.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium
           retbaense DSM 5692]
 gi|257796916|gb|ACV67853.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium
           retbaense DSM 5692]
          Length = 474

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/452 (47%), Positives = 304/452 (67%), Gaps = 23/452 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+++IGQ +AKR VAIALRNRWRRQQL  +L +E+ PKNI+++GPTGVGK
Sbjct: 25  LTPREIVAELDKFVIGQDEAKRMVAIALRNRWRRQQLDPELAEEIAPKNIIMIGPTGVGK 84

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF KVE +KFTE+GYVGR+VE +IRDL+++ I +VR+   D VR +A
Sbjct: 85  TEIARRLAKLARAPFFKVEASKFTEVGYVGRDVESMIRDLMEIGITLVRQEEMDRVRGKA 144

Query: 127 SINAEERILDALV---------------------GKTATSNTREVFRKKLRDGEISDKEI 165
              AEE++LD L+                     G+ A  +TRE FR   R G + D+ +
Sbjct: 145 EEQAEEKLLDLLLPRGGKEDTAPSGQTFSDAAASGEGAKQSTREKFRTLFRQGRLDDRLV 204

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++V      +    +PG   +      ++FSK+M    K + +M V+  Y  L+++ESD
Sbjct: 205 EVQVQAQGPQLQMASMPGMEEMET-QFKDMFSKIMPKKSKTR-KMQVRDAYEHLVQEESD 262

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +LIDMD V   + + VE  GI+FLDE DK+ ++  G    VSREGVQRDLLP+VEG  V+
Sbjct: 263 KLIDMDKVSEKARERVEQNGIIFLDEIDKVCSQREGGQTDVSREGVQRDLLPVVEGCVVN 322

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TK+G + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV L +L K++F  ILT+ ++ L
Sbjct: 323 TKHGMVRTDHILFIAAGAFHYAKPSDLIPELQGRFPLRVELAALEKAEFYRILTEPQNAL 382

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
            +QY+ L+ TE + L FT+D++  +A  A  +N    +IGARRL T+ME++L  +SF A 
Sbjct: 383 TVQYEALLGTEQVALSFTDDALQEVAAFAQRVNEETENIGARRLYTIMEKILNTLSFEAP 442

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D     VV+DAEYVR H+     + D+  +IL
Sbjct: 443 DKAGIEVVVDAEYVRQHLEGLEEDRDLTRYIL 474


>gi|170703231|ref|ZP_02894034.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria IOP40-10]
 gi|170131864|gb|EDT00389.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria IOP40-10]
          Length = 447

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFARDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDANYVDRALGEVAQDEDLSRYVL 447


>gi|59712885|ref|YP_205661.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75353333|sp|Q5E2H3|HSLU_VIBF1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|59480986|gb|AAW86773.1| molecular chaperone and ATPase component of HslUV protease [Vibrio
           fischeri ES114]
          Length = 444

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/442 (49%), Positives = 303/442 (68%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFRA 123

Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175
             +AE+RILD L+       G     N    TR+ FRKKLR+G++ DKEI+++VA     
Sbjct: 124 EEHAEDRILDILLPPARDAWGNNEEGNNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    KK +M +      L  +E  +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELKE 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN+GIVF+DE DKI    + +   VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFI SGAF +++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QY  L+ T
Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTADDFKRILTEPNASLTEQYIALLAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+   +++++D
Sbjct: 363 ENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIVD 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV   +G+  ++ D+  FIL
Sbjct: 423 AEYVSSRLGELVADEDLSRFIL 444


>gi|119896715|ref|YP_931928.1| ATP-dependent protease ATP-binding subunit HslU [Azoarcus sp. BH72]
 gi|166221459|sp|A1K2I6|HSLU_AZOSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119669128|emb|CAL93041.1| ATP-dependent Hsl protease ATP-binding subunit [Azoarcus sp. BH72]
          Length = 443

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++I+GQ  AK+AVAIALRNRWRR ++   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPPEIVSELDKHIVGQARAKKAVAIALRNRWRRARIDEPLRSEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDLV++AI   RE     VR++
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLVEIAIKDGRERAMRVVRDR 122

Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+R+LD L+            +   S TR+ FRKKLR+GE+ DKE++IEVA    
Sbjct: 123 ALDAAEDRVLDVLLPPARPVGFSEPAQPQDSATRQKFRKKLREGELDDKEVEIEVASAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               F  PG   +    +  +F   +G+ RKK  ++ +++    L  +E+ RLI+ + V 
Sbjct: 183 QAEIFAPPGMEEL-TQQIQGMFQN-LGNSRKKLRKLPIREALKLLADEEAARLINDEEVK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            ++++ VE  GIVFLDE DKI AR   +G  VSR+GVQRDLLPLVEG+++STKYG I TD
Sbjct: 241 TEALRAVEQNGIVFLDEVDKIAARADAHGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T++ L  QY+ L+ 
Sbjct: 301 HILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFERILTSTDACLTRQYEALLA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           T+G+ L FT + I  LA++A  +N    +IGARRL TVME++LE++SF A  +    + +
Sbjct: 361 TDGVTLSFTPEGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGKVGVDKLTV 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +       D+  ++L
Sbjct: 421 DAAYVDARLEVLAQREDLARYVL 443


>gi|254448955|ref|ZP_05062410.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium HTCC5015]
 gi|198261492|gb|EDY85782.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium HTCC5015]
          Length = 453

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/454 (50%), Positives = 306/454 (67%), Gaps = 27/454 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ  AKRAV+IALRNRWRR QLP   R E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVQELDKHIIGQHAAKRAVSIALRNRWRRMQLPEATRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR V+ II+DL D+A+  VRE  +++V  +A
Sbjct: 64  TEIARRLAKLANAPFMKVEATKFTEVGYVGREVDSIIKDLADIAVKQVRELEKEKVWPRA 123

Query: 127 SINAEERILDALVGKT-ATSN--------------------TREVFRKKLRDGEISDKEI 165
              AE+R+LD L+    +TSN                    TR+ FRKKLR+G+++DKEI
Sbjct: 124 QDAAEDRVLDILLPPARSTSNGFGFDLSGEESPSEPAQDNETRQKFRKKLREGDLNDKEI 183

Query: 166 DIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           ++EVA  S  +     PG    S  + ++   FS      RK    M ++     L  +E
Sbjct: 184 EVEVAAQSGGMQIMTPPGMEEMSSQLEDMFSKFSSKQSKKRK----MRIEDALKVLTDEE 239

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + ++I+ D +   +I+  E  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+
Sbjct: 240 AGKMINEDDLKVRAIEQAEQNGIVFIDEIDKICQRSDRSGGDVSREGVQRDLLPLIEGST 299

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYG I TDHILFI SGAFH+S+P+DL+PE+QGR P+RV ++ L   DF+ IL + + 
Sbjct: 300 VNTKYGMIKTDHILFIGSGAFHLSKPSDLIPELQGRLPIRVEMEKLTADDFQRILKEPDH 359

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L  QY  L+ TEG+ L+FTE+ ID +A+VA  +N    +IGARRL TVMER+LE++S+ 
Sbjct: 360 SLTKQYMALIGTEGLTLEFTEEGIDRIAEVAWQVNERTENIGARRLHTVMERLLEEVSYE 419

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ASD  +KT+ +DA YV  HIG    + D+  +IL
Sbjct: 420 ASDSSDKTLSVDAAYVDSHIGALVEDEDLSRYIL 453


>gi|77361646|ref|YP_341221.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588929|sp|Q3IJD5|HSLU_PSEHT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|76876557|emb|CAI87779.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Pseudoalteromonas haloplanktis TAC125]
          Length = 442

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 311/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR+E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLSDDLRNEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTEIGYVG+ VE IIRDLVDVAI + RE +  + + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEIGYVGKEVETIIRDLVDVAIKMTREQQTKKFKHRA 123

Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+              +S+TR+ FRKKLR+G++ DKEI+I++A    ++
Sbjct: 124 EEAAEERILDALLPPAKDQYGESQRDDSSSTRQTFRKKLREGQLDDKEIEIDLAQAQPNV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +   
Sbjct: 184 EIMAPPGMEDM-TNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLSEEEAAKLVNPEELKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +VSTK+G + TDH+
Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTDHM 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KTE
Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + ++F++D+I+ +A  A  +N    +IGARRL TVME+++E+IS+ AS+    ++V+DA
Sbjct: 362 QVTIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGTSLVVDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G    + D+  +IL
Sbjct: 422 AYVEKHLGALVEDEDLSRYIL 442


>gi|332142914|ref|YP_004428652.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332143041|ref|YP_004428779.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|238693267|sp|B4RY96|HSLU_ALTMD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|327552936|gb|AEA99654.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327553063|gb|AEA99781.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 442

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 308/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFRA 123

Query: 127 SINAEERILDALVG--KTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+   + A  N        TR+ FRKKLR G++ DKEI+I+VA     +
Sbjct: 124 EEAAEERILDVLLPPPEDAWGNKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + GS +KKK ++ +++    L+ +E+ RL++ + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEALKLLIEEEAARLVNQEDLKEK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  R+  N   VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 242 AIESVEQHGIVFVDEIDKICKREGNNSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LMKTE
Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTQQYIALMKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + F +  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VIDA
Sbjct: 362 GVDIRFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+       D+  FIL
Sbjct: 422 DYVNNHLETLVDNEDLSRFIL 442


>gi|167585119|ref|ZP_02377507.1| ATP-dependent protease ATP-binding subunit [Burkholderia ubonensis
           Bu]
          Length = 447

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/447 (48%), Positives = 317/447 (70%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTREAEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171
           A+  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++  
Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQ 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +     PG   +    +  +FS  +G G+K + ++ + +    L  +E+ ++++ +
Sbjct: 183 PTIGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKISEALKLLTDEEAAKMLNEE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290
            V   ++Q VE  GIVFLDE DKI +R++  G G VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNNEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T+++L+ QY+
Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVSTDASLVKQYQ 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F ED I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 361 ALLATEDVQLEFAEDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGE 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V IDA+YV   +G+   + D+  ++L
Sbjct: 421 CVTIDAKYVERALGEVSQDEDLSRYVL 447


>gi|87200647|ref|YP_497904.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136328|gb|ABD27070.1| heat shock protein HslVU, ATPase subunit HslU [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 433

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/433 (53%), Positives = 314/433 (72%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+ IV  LD +I+GQ  AK+AVA+ALRNRWRRQ+L ADLRDE+ PKNIL++GPTG G
Sbjct: 4   SLTPKAIVRALDEHIVGQTAAKKAVAVALRNRWRRQRLSADLRDEVSPKNILMIGPTGCG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD VRE 
Sbjct: 64  KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDAVREA 123

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP-GG 184
           AS  A +R+L ALVG  A+  TRE F+ +L DG ++D E++IEV D  S     +IP  G
Sbjct: 124 ASKAAMDRLLKALVGDGASEATRESFKARLSDGSMNDVEVEIEVEDAPS--MPMEIPGMG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NLS++  K  G    K+ +M V   + +L+ +E+++ +D D V R++I+  E  
Sbjct: 182 GGIGMINLSDMMGKAFGKQNLKRRKMRVVDAWDKLVDEEAEKRMDQDDVAREAIRNAETN 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASGAF
Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+D+LPE+QGR P+RV L +L++ DF  IL++T +NL+ QY+ L+ TE + LD T 
Sbjct: 301 HVAKPSDMLPELQGRLPIRVELNALSEDDFVRILSETRANLVEQYRALIATENVTLDITP 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
            +I A+A  A  +N +V +IGARRLQTVME++LE++SF A D   +TV++D  YV   + 
Sbjct: 361 AAIRAIARTAAQVNESVENIGARRLQTVMEKLLEEVSFDAEDRAGETVMVDEAYVADKLA 420

Query: 425 DFPSETDMYHFIL 437
           +     D+  +IL
Sbjct: 421 NLAGNADLSKYIL 433


>gi|31340164|sp|Q8D2S7|HSLU_WIGBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 443

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R    ++ R +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 122

Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+            K   S TR+ FRKKL+  E+ DKEI+I +A T  
Sbjct: 123 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +K + ++ +++    L+ +ES +LI+++ + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFKNLAGQKQKPR-KIKIKEAMRLLIEEESAKLINLEEIK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +++ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY  LM 
Sbjct: 301 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+I+ FT++ I  +A+ A  +N +  +IGARRL T++ER++E++S++AS+   K + I
Sbjct: 361 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    S+ D+  FIL
Sbjct: 421 DADYVSNHLDKLVSDEDLSRFIL 443


>gi|319789318|ref|YP_004150951.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio
           ammonificans HB-1]
 gi|317113820|gb|ADU96310.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio
           ammonificans HB-1]
          Length = 480

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/464 (46%), Positives = 320/464 (68%), Gaps = 38/464 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR IV ELD+Y++GQ++AK+AVAIALRNRWRRQ+LP ++RDE++PKNI+++GPTGVGK
Sbjct: 22  LTPRRIVEELDKYVVGQREAKKAVAIALRNRWRRQRLPEEMRDEVVPKNIIMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLV++A+N+V+E +  +V E+A
Sbjct: 82  TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVNMVKEEKMAQVEERA 141

Query: 127 SINAEERILDALVG------KTATSNTREVF--------------------------RKK 154
              A ER+ + +V       + +  N  ++F                          +K 
Sbjct: 142 RELAYERLAEYMVPEPKHPQQQSVQNLFDIFFPSPARQKDHDYEAELSRLKDERNRIKKL 201

Query: 155 LRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L++G++ D+ ++I V  +T+  I+   + G  S    NL ++ S ++   +K + +M V+
Sbjct: 202 LKEGKLDDEIVEIPVTVETTPGINVVGLGGDIS----NLQDVLSSILPKPKKLR-KMKVK 256

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E+ +LIDMD V R++I   EN GI+F+DE DK+ +R+   G  VSREGVQR
Sbjct: 257 EAIRYLTQEEASKLIDMDEVIREAIDRAENQGIIFIDEIDKVASREGARGPDVSREGVQR 316

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLP+VEGS VSTKYG + TDH+LFIA+GAFHV++P+DLLPE+QGRFP+RV LK L K D
Sbjct: 317 DLLPIVEGSKVSTKYGLVRTDHMLFIAAGAFHVAKPSDLLPELQGRFPIRVELKPLTKED 376

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ L  QYK L++TEG+ L+FT D I+ +A +A   N    +IGARRL TVM
Sbjct: 377 FVRILTEPKNALTKQYKALLETEGVELEFTPDGIEEIARIAEEANERAENIGARRLHTVM 436

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++SF A +++ + VV+D ++VR  + D   + D+  ++L
Sbjct: 437 EKLLEEVSFMAPEMKGQKVVVDRDFVREKLSDIIQDEDLTKYVL 480


>gi|32491026|ref|NP_871280.1| ATP-dependent protease ATP-binding subunit HslU [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166232|dbj|BAC24423.1| hslU [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 451

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L   LR E+ PKNIL++GPTGVG
Sbjct: 11  NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R    ++ R +
Sbjct: 71  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 130

Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+            K   S TR+ FRKKL+  E+ DKEI+I +A T  
Sbjct: 131 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 190

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  +K + ++ +++    L+ +ES +LI+++ + 
Sbjct: 191 GVEIMAPPGMEEM-TSQLQSMFKNLAGQKQKPR-KIKIKEAMRLLIEEESAKLINLEEIK 248

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +++ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 249 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 308

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY  LM 
Sbjct: 309 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 368

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+I+ FT++ I  +A+ A  +N +  +IGARRL T++ER++E++S++AS+   K + I
Sbjct: 369 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 428

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    S+ D+  FIL
Sbjct: 429 DADYVSNHLDKLVSDEDLSRFIL 451


>gi|94986778|ref|YP_594711.1| ATP-dependent protease ATP-binding subunit HslU [Lawsonia
           intracellularis PHE/MN1-00]
 gi|166221590|sp|Q1MRI6|HSLU_LAWIP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|94731027|emb|CAJ54390.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 433

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/433 (49%), Positives = 310/433 (71%), Gaps = 5/433 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD+YIIGQ+ AKR VAIA+RNRWRRQQL   LRDE+ P+NI+++GPTGVGK
Sbjct: 4   LTPREIVVELDKYIIGQEQAKRMVAIAVRNRWRRQQLQEGLRDEVAPRNIIMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TK+TE+GYVGR+VE +IRDL++++IN+VR+   ++VRE+A
Sbjct: 64  TEIARRLAKLCHAPFIKVEATKYTEVGYVGRDVESMIRDLMEISINLVRKEEAEKVRERA 123

Query: 127 SINAEERILDAL--VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            + AEER+LD L  +G+   + TRE  R   R G + D+E+DIEV + +  I   ++PG 
Sbjct: 124 EVLAEERLLDLLLPIGENRDA-TREKLRSLFRQGHLKDREVDIEVQEQTQPIGILNVPGM 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G   + + FS++      ++ +M V   +  L+ +ES+RL+D D +   + + VE  
Sbjct: 183 EQIGN-QMKDAFSRIFPQKTHRR-KMKVSAAWEHLVGEESNRLVDNDKLTDLARERVEQM 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ +        +SREGVQRDLLP+VEGS+V+TKYG I TDHILFIA+GAF
Sbjct: 241 GIVFIDEIDKLASASQHRSSDISREGVQRDLLPIVEGSAVNTKYGLIKTDHILFIAAGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+S+P+DL+PE+QGRFP+R  L++L K++F  ILT+ ++ L  QY+ L++TEG+ + FT+
Sbjct: 301 HLSKPSDLIPELQGRFPLRAELEALGKNEFYRILTEPDNALTRQYEALLETEGVKIVFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D +  ++  A ++N+   +IGARRL T+ME++L DISF A +    T+ +  EYV  ++ 
Sbjct: 361 DGLKEISAFAEDVNTQTENIGARRLHTIMEKILADISFDAPEKFGTTLEVTKEYVVSYLE 420

Query: 425 DFPSETDMYHFIL 437
           D  + T++  FIL
Sbjct: 421 DIRANTELSRFIL 433


>gi|160871613|ref|ZP_02061745.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella
           grylli]
 gi|159120412|gb|EDP45750.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella
           grylli]
          Length = 498

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/447 (47%), Positives = 303/447 (67%), Gaps = 16/447 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV ELDR+IIGQ +AKRA+AIALRNR RR  L  +LRDE+ PKNIL++GP+GV
Sbjct: 54  IDLTPKQIVQELDRFIIGQNEAKRAIAIALRNRKRRMLLEPELRDEVTPKNILMIGPSGV 113

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I RR A++ G PF+K+E TKFTE+GY+GR+V+ I RDLVD A  ++RE     ++ 
Sbjct: 114 GKTEIGRRAAKITGCPFLKIEATKFTEVGYIGRDVDSIPRDLVDSAFKLLREEEITRLQP 173

Query: 125 QASINAEERILDALVGKT-ATSN-------------TREVFRKKLRDGEISDKEIDIEVA 170
           Q    AE +ILD  V  + AT N              R VFRKKL+ G++ DK+I+IE+A
Sbjct: 174 QVLEAAESKILDCFVPPSRATKNEAVDELKSKEKSIARNVFRKKLQAGQLDDKQIEIELA 233

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              + +     PG   +    L  +   + G+ R +  RM V+     + ++E+ +L+D 
Sbjct: 234 ALPAGVEIMGPPGMEDM-TSQLQNMLQNI-GASRTRSRRMKVKDALMVIQKEEASKLLDE 291

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + R +I+ VE YGIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +VSTKYG 
Sbjct: 292 EDLKRKAIEWVEQYGIVFIDEIDKVCRRGETSGADVSREGVQRDLLPLIEGCTVSTKYGM 351

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL + +++LI+QY+
Sbjct: 352 VRTDHILFIAAGAFHLSKPSDLVPELQGRLPIRVELKALTAKDFERILIEPQASLIVQYQ 411

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG++L+F + +I  +A++A +LN    +IGARRL TVMER+LE+ISF A+D  +K
Sbjct: 412 ALLNTEGLLLNFDKHAIQRIAEIAFDLNERTENIGARRLYTVMERLLEEISFEATDYTDK 471

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + I+  YV  H+     + D  HFIL
Sbjct: 472 NLTINVNYVDKHLTSLAQDHDTSHFIL 498


>gi|121611469|ref|YP_999276.1| ATP-dependent protease ATP-binding subunit HslU [Verminephrobacter
           eiseniae EF01-2]
 gi|166221615|sp|A1WRK1|HSLU_VEREI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|121556109|gb|ABM60258.1| heat shock protein HslVU, ATPase subunit HslU [Verminephrobacter
           eiseniae EF01-2]
          Length = 441

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 300/441 (68%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELD++I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDKHIVGQSSAKRAVAIALRNRWRRQQVQGSLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+   RES   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLADMAVKQTRESEMKKVRAR 122

Query: 126 ASINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AE+RILD L+            A   TR++FRKKLR+G + DK+I+I+V ++   +
Sbjct: 123 AEDAAEDRILDVLIPPPRGADGAEPAADGTTRQMFRKKLREGLLDDKDIEIDVTESRPHL 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS+  G  +++  ++ + +    L  +E+ +L++ + +   
Sbjct: 183 EIMG-PQGMEEMTEQLRSMFSQ-FGQDKRRTRKLKIAEAMKLLTDEEAGKLVNEEEIKTR 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++   E  GIVF+DE DK+  R   +G  VSR+GVQRDLLPLVEG++VSTKYG I TDHI
Sbjct: 241 ALANAEQNGIVFIDEIDKVATRQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMIKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ TE
Sbjct: 301 LFIASGAFHLSRPSDLIPELQGRFPIRVELESLSVQDFEAILTQTHASLVKQYQALLATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L F    I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV ID 
Sbjct: 361 DVTLAFVPQGITRLACIAFEVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVTIDE 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +       D+  +IL
Sbjct: 421 GYVDQRLQQLSLNEDLSRYIL 441


>gi|323701843|ref|ZP_08113513.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533147|gb|EGB23016.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           nigrificans DSM 574]
          Length = 464

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/463 (45%), Positives = 322/463 (69%), Gaps = 32/463 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+YI+GQ  AK+AVA+ALRNR+RR +LP DL DE++PKNIL++GPTGVG
Sbjct: 3   DLTPRQIVAELDKYIVGQNKAKKAVAVALRNRYRRSKLPEDLIDEVVPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+
Sbjct: 63  KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKMEEVEER 122

Query: 126 ASINAEERILDALVG----KTATSNT---------------------------REVFRKK 154
           A   A+ERI++ L       + T N                            RE  R+K
Sbjct: 123 ARRMADERIIEILAPMPNRPSQTKNPLEMLFGGGQQTQDDQAYEQQNSRIKFERETLREK 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L  GE+ ++ ++IEV DT++ +       G     +N+ ++   +    +K+K ++SV++
Sbjct: 183 LERGELENEYLEIEVEDTNTPMFEVFTNSGVEEMGVNMQDVLGSIFPR-KKRKRKVSVRE 241

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L   E+ +LIDMD +  ++++  E +GI+FLDE DKI AR+   G  VSR GVQRD
Sbjct: 242 ARKILTSQEAQKLIDMDELTAEAVKRAEEHGIIFLDEIDKIAAREGSAGPDVSRGGVQRD 301

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++SDF
Sbjct: 302 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRSDF 361

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           + IL +  ++LI QY EL++TEG+ ++F+++S++ +AD+A  +N    +IGARRL T++E
Sbjct: 362 QQILVEPRNSLIKQYTELLRTEGVNIEFSKNSLEEIADIAYTVNEQTENIGARRLHTILE 421

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LEDISF A +L+ +++ ID+ YV+  + D  +  D+  +IL
Sbjct: 422 KLLEDISFEAPELKGQSLTIDSAYVQEKLKDVVANRDLSRYIL 464


>gi|260772033|ref|ZP_05880950.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           metschnikovii CIP 69.14]
 gi|260612900|gb|EEX38102.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           metschnikovii CIP 69.14]
          Length = 443

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ+ AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQEKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+               +S TR+VFRKKLR+G++ DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPARDAWGESEKTEQSSTTRQVFRKKLREGQLDDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G  +KK+     +     L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKLKIKE-ALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TDH
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMKT
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + + FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++     +VID
Sbjct: 362 EQVDISFTEDGIKQIAEAAWQVNESTENIGARRLHTVMERLMDEISYEATERPGSQMVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   + +   + D+  FIL
Sbjct: 422 GDYVHDRLSELVEDEDLSRFIL 443


>gi|330839574|ref|YP_004414154.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas
           sputigena ATCC 35185]
 gi|329747338|gb|AEC00695.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas
           sputigena ATCC 35185]
          Length = 472

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/460 (48%), Positives = 316/460 (68%), Gaps = 33/460 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL   ++D+++PKNIL++G TGVGKT
Sbjct: 16  TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 75

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+
Sbjct: 76  EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 135

Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159
             AEERILD  V +   S                              RE  RK+L  GE
Sbjct: 136 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 195

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217
           +  + I+IE+ D+   +    +  G+S+  +  NL ++ + +M   +KK+ ++SV     
Sbjct: 196 LEKEVIEIEIEDSGKPMVG--MFAGSSLESMGDNLQDMMANLMPKKQKKR-KVSVAAARK 252

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
              ++E+ +L+DM+ V   +I+  E  GIVFLDE DK+  +  G+G  VSREGVQRD+LP
Sbjct: 253 LFQQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILP 312

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ I
Sbjct: 313 IVEGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRI 372

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+   +IGARRL T++E++L
Sbjct: 373 LTEPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLL 432

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A +++EK V +DA YV   + D     D+  FIL
Sbjct: 433 EDLSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 472


>gi|260886592|ref|ZP_05897855.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260863735|gb|EEX78235.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 466

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/460 (48%), Positives = 316/460 (68%), Gaps = 33/460 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL   ++D+++PKNIL++G TGVGKT
Sbjct: 10  TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+
Sbjct: 70  EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 129

Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159
             AEERILD  V +   S                              RE  RK+L  GE
Sbjct: 130 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 189

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217
           +  + I+IE+ D+   +    +  G+S+  +  NL ++ + +M   +KK+ ++SV     
Sbjct: 190 LEKEVIEIEIEDSGKPMVG--MFAGSSLESMGDNLQDMMANLMPKKQKKR-KVSVAAARK 246

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
              ++E+ +L+DM+ V   +I+  E  GIVFLDE DK+  +  G+G  VSREGVQRD+LP
Sbjct: 247 LFQQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILP 306

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ I
Sbjct: 307 IVEGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRI 366

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+   +IGARRL T++E++L
Sbjct: 367 LTEPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLL 426

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A +++EK V +DA YV   + D     D+  FIL
Sbjct: 427 EDLSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 466


>gi|171060508|ref|YP_001792857.1| ATP-dependent protease ATP-binding subunit HslU [Leptothrix
           cholodnii SP-6]
 gi|170777953|gb|ACB36092.1| heat shock protein HslVU, ATPase subunit HslU [Leptothrix cholodnii
           SP-6]
          Length = 451

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/453 (48%), Positives = 306/453 (67%), Gaps = 22/453 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIV+ELDR+I+GQQ AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSLTPQEIVAELDRHIVGQQQAKRAVAIALRNRWRRQQVDDKLRGEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+ AI   RE +   +R 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVESAIKQERERQVTLMRS 120

Query: 125 QASINAEERILDALV--------------------GKTATSNTREVFRKKLRDGEISDKE 164
           +A   AE+RILD LV                       A +  R+V RK+LR+G + DKE
Sbjct: 121 RAEDAAEDRILDILVPPPRSAGRSDFGFLEPQATPAPAADNTARQVMRKRLREGTLDDKE 180

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+I++AD    +     P G       L  LFS+ MG G++++ ++ + +    L+ +E+
Sbjct: 181 IEIDLADAKPTLEIMG-PAGMEAMADQLKGLFSQ-MGQGKRQQRKVKIGEARRLLVDEEA 238

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            +L++ D     ++   E  GIVF+DE DK+ +  +  G  VSR+GVQRDLLPLVEG+SV
Sbjct: 239 QKLVNEDETRSRALLHTEQNGIVFIDEIDKVASSGNTQGADVSRQGVQRDLLPLVEGTSV 298

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            TKYG + TDHILFIASGAFHVS+P+DL+PE+QGRFP+RV L++L+  DF  IL+ T ++
Sbjct: 299 QTKYGLVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELQALSVDDFEAILSSTHAS 358

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L+ TEG+ L+F  D++  LA +A ++N    +IGARRL TV+ER+L++ISF A
Sbjct: 359 LIKQYQALLATEGVTLEFAPDAVRRLAQIAFDVNERTENIGARRLATVLERLLDEISFDA 418

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             L   TV IDA  V   + +  +  D+  ++L
Sbjct: 419 PGLAGSTVQIDAALVDRKLAELAANEDLSRYVL 451


>gi|323524456|ref|YP_004226609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1001]
 gi|323381458|gb|ADX53549.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1001]
          Length = 448

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/448 (48%), Positives = 312/448 (69%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTK 122

Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L+        G +++        S TR+ FRK+LR+G + DKEI+++V
Sbjct: 123 AEDQAEDRILDILLPTARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           KTV IDA YV   + +   + D+  ++L
Sbjct: 421 KTVQIDAAYVDRALSEVAEDEDLSRYVL 448


>gi|270159288|ref|ZP_06187944.1| heat shock protein HslVU ATPase subunit HslU [Legionella
           longbeachae D-4968]
 gi|269987627|gb|EEZ93882.1| heat shock protein HslVU ATPase subunit HslU [Legionella
           longbeachae D-4968]
          Length = 439

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/442 (52%), Positives = 308/442 (69%), Gaps = 14/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR ++  PA LR+E+MPKNIL++GPTGV
Sbjct: 1   MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPA-LRNEIMPKNILMIGPTGV 59

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+   RE    +V  
Sbjct: 60  GKTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEH 119

Query: 125 QASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+     S T        R+VFRK+LR+G +++ EI+IEV+ T   I
Sbjct: 120 LAEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGI 179

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V GS R K  +M++ K    L  +E+ +LI+ D +   
Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTR 237

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE  GIVF+DE DK+  R ++G+G  VSREGVQRDLLPLVEG++V+TKYG I +DH
Sbjct: 238 AIENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDH 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM T
Sbjct: 298 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMAT 357

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   ++V +D
Sbjct: 358 EGLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVD 417

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  ++G   ++ D+  +IL
Sbjct: 418 KAYVDKNLGQLVADEDLARYIL 439


>gi|289165888|ref|YP_003456026.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           longbeachae NSW150]
 gi|288859061|emb|CBJ12990.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           longbeachae NSW150]
          Length = 440

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/442 (52%), Positives = 308/442 (69%), Gaps = 14/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
            +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR ++  PA LR+E+MPKNIL++GPTGV
Sbjct: 2   MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPA-LRNEIMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+   RE    +V  
Sbjct: 61  GKTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEH 120

Query: 125 QASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDI 176
            A   AEERILD L+     S T        R+VFRK+LR+G +++ EI+IEV+ T   I
Sbjct: 121 LAEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGI 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F +V GS R K  +M++ K    L  +E+ +LI+ D +   
Sbjct: 181 EIMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTR 238

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE  GIVF+DE DK+  R ++G+G  VSREGVQRDLLPLVEG++V+TKYG I +DH
Sbjct: 239 AIENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM T
Sbjct: 299 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   ++V +D
Sbjct: 359 EGLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVD 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV  ++G   ++ D+  +IL
Sbjct: 419 KAYVDKNLGQLVADEDLARYIL 440


>gi|163859118|ref|YP_001633416.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella petrii
           DSM 12804]
 gi|229486074|sp|A9IH53|HSLU_BORPD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163262846|emb|CAP45149.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella petrii]
          Length = 444

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/442 (51%), Positives = 304/442 (68%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD+YIIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   TMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVEEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV  +            SN R+ FRK+LR+G+  D EI+IE+A     
Sbjct: 125 AEDAAEDRILDALVPPSRGTSGEPERGEDSNARQTFRKRLREGKCDDLEIEIEIAQPVPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +   +KK  +M V++ +  ++ +E+ + I+ D +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKPKKMKVKEAFKLIVEEEAAKRINEDDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++LI QY  L+ T
Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAQDFVRILSDTDASLIKQYSALLGT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + LDF  D I+ LA++A ++N    +IGARRL TVME++LE++SF A+    KT+ ID
Sbjct: 363 EDVQLDFKPDGIERLAELAFSVNERTENIGARRLYTVMEKLLEELSFDATASSGKTITID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVDAQLSEAASSQDLARYVL 444


>gi|302392401|ref|YP_003828221.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium
           arabaticum DSM 5501]
 gi|302204478|gb|ADL13156.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium
           arabaticum DSM 5501]
          Length = 467

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/468 (47%), Positives = 316/468 (67%), Gaps = 41/468 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV +LD+YI+GQ++AK++VA+ALRNR+RR+QL  +L++E+MPKNIL++GPTGVGK
Sbjct: 4   LTPRKIVEQLDKYIVGQEEAKKSVAVALRNRYRRRQLSTELKEEIMPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF KVEVTKFTE+GYVGR+VE +IRDLV  AI +V+  R +EV ++A
Sbjct: 64  TEIARRLAKLAQAPFAKVEVTKFTEVGYVGRDVESMIRDLVQTAIRMVKRERMEEVEDKA 123

Query: 127 SINAEERILDALVGKTATSNT---------------------------------REVFRK 153
              AE+RILD L+      N                                  RE  R+
Sbjct: 124 EKLAEDRILDKLLPLPENENNSNPLGALFGNFGNEENNSSEVEDQEHLKRLKKRREELRE 183

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ D+ I+IEV + +S +   ++  G+ V  + ++  F  V+G     + K+ + 
Sbjct: 184 KLRAGELEDRVIEIEVEENNSQM--IEVFSGSGVEEMGVN--FQDVLGGMFPNQTKERKA 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSRE 269
           S+++    L + E+ +LIDMD V  ++I  VE  GI+FLDE DK+   + S +G  VSRE
Sbjct: 240 SIKEAREILKQQEAQKLIDMDEVSSEAISRVEESGIIFLDEIDKVAGDNASSSGPEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V TK+G + TDHI FIA+GAFHVS+P DL+PE+QGRFP+RV L SL
Sbjct: 300 GVQRDILPIVEGSTVMTKHGPVKTDHIFFIAAGAFHVSKPTDLIPELQGRFPIRVELSSL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + +F+ ILT+ E+ L  QYK L+ TE + ++FTE +I+ LA +A  +N    +IGARRL
Sbjct: 360 TEENFKAILTEPENALTKQYKALLTTEDLEIEFTERAIEELASIAFQINEETENIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TV+E++LEDISF A ++ E ++ IDAEYV+  + D   + D+  +IL
Sbjct: 420 HTVLEKLLEDISFEAPEMSEDSIEIDAEYVQDKLSDIVEDKDLSRYIL 467


>gi|83721034|ref|YP_440722.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
 gi|167579395|ref|ZP_02372269.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis TXDOH]
 gi|123726686|sp|Q2T277|HSLU_BURTA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83654859|gb|ABC38922.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           thailandensis E264]
          Length = 447

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/449 (48%), Positives = 316/449 (70%), Gaps = 21/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEI--DIEV 169
           A+  AE+RILD L      VG  A+        + TR+ FRK+LR+G++ DKEI  DIE 
Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                DI     P G       +  +FS  +GSG+K++ ++ +++    L  +E+ ++++
Sbjct: 183 PTVGMDIM---APPGMEEMTEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLN 238

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKY
Sbjct: 239 DEEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKY 298

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ Q
Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQ 358

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +  
Sbjct: 359 YQALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHA 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++V IDA YV   +G+   + D+  ++L
Sbjct: 419 GQSVTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|85859270|ref|YP_461472.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophus
           aciditrophicus SB]
 gi|85722361|gb|ABC77304.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 460

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/459 (49%), Positives = 318/459 (69%), Gaps = 30/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV +LD++IIGQ DAKRAVAIALRNRWRRQ +P +LRDE+ PKNI+++GPTGVG
Sbjct: 5   SLTPAEIVEKLDQHIIGQADAKRAVAIALRNRWRRQNVPDELRDEIAPKNIIMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  +PF+KVE +KFTE+GYVGR+VE +IRDLVD+A+N+VRE  +++V  +
Sbjct: 65  KTEIARRLAKIDNSPFLKVEASKFTEVGYVGRDVESMIRDLVDLAVNMVREEEQEKVLAR 124

Query: 126 ASINAEERI-------------LDALVGKTAT-----------SNTREVFRKKLRDGEIS 161
           A+  AEER+             +D ++   +             +TRE  R+ L DG+++
Sbjct: 125 AAEIAEERLLDLLLPPKPVERNVDEMMADHSQLPEKSEQAKPYDSTREKLRRLLHDGKLN 184

Query: 162 DKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKI-RMSVQKCYPE 218
            + +D+E+ +T S   I  F   G   +G LNL E+F  ++   +KKKI R++V +    
Sbjct: 185 GRYVDLELTETRSAPMIEIFSSSGVEDLG-LNLKEMFGNMLP--QKKKISRVNVTEALEI 241

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  +E+ RL+DMD V R ++  VE  GI+FLDE DK+V  D+ +G  VSREGVQRDLLP+
Sbjct: 242 LTEEEAQRLVDMDKVTRTALDRVEQSGIIFLDEIDKVVGSDTPSGPDVSREGVQRDLLPI 301

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+T+YG + TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L SL K +F  IL
Sbjct: 302 VEGSNVNTRYGMVRTDHILFIAAGAFSSSKPSDLIPELQGRFPIRVELDSLGKEEFIRIL 361

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            +  + LI QY E+M TEG+ L FT+DSI  +ADVA  +N    +IGARRL T+ME +LE
Sbjct: 362 KEPNNALIKQYTEMMATEGVSLFFTDDSIAEIADVAAVVNERTENIGARRLYTIMEILLE 421

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           DISF+A  L  + VVID +YV   + D   + D+  +IL
Sbjct: 422 DISFNAPGLSGQKVVIDEQYVEDKLCDIIEDEDLSRYIL 460


>gi|167617495|ref|ZP_02386126.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis Bt4]
          Length = 444

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/448 (48%), Positives = 316/448 (70%), Gaps = 21/448 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEI--DIEVA 170
           +  AE+RILD L      VG  A+        + TR+ FRK+LR+G++ DKEI  DIE  
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               DI     P G       +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ 
Sbjct: 181 TVGMDIM---APPGMEEMTEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLND 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 237 EEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY
Sbjct: 297 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 357 QALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++V IDA YV   +G+   + D+  ++L
Sbjct: 417 QSVTIDAAYVDRALGEVSKDEDLSRYVL 444


>gi|289548465|ref|YP_003473453.1| heat shock protein HslVU, ATPase HslU [Thermocrinis albus DSM
           14484]
 gi|289182082|gb|ADC89326.1| heat shock protein HslVU, ATPase subunit HslU [Thermocrinis albus
           DSM 14484]
          Length = 448

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/446 (49%), Positives = 317/446 (71%), Gaps = 16/446 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P  IV EL RY++GQ++AK+AVAIALRNRWRRQ+LP  +RDE+ PKN+L++GPT
Sbjct: 8   LLEELTPARIVEELSRYVVGQEEAKKAVAIALRNRWRRQKLPEHIRDEVAPKNLLMIGPT 67

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APF+KVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +   V
Sbjct: 68  GVGKTEIARRLAQLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKLQSV 127

Query: 123 REQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           RE+A   AEERILD LV +  +         + RE  R+KLR GE+ +K ++I+V +   
Sbjct: 128 RERARRAAEERILDYLVPQQLSFGHRSPQDLSRREAIREKLRSGELDEKYVEIDVQEKMP 187

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            I     P G       L E    ++G   SGRK++ ++ V++    L ++E+++LID +
Sbjct: 188 PIVGIAGPPGLE----ELEEQIRNMLGGVLSGRKRR-KVKVKEALHLLEQEEAEKLIDQE 242

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V R++I   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP+VEG+ V TKYG +
Sbjct: 243 EVAREAIYRAENFGIIFIDEIDKIAIKTPGVGPGVSREGVQRDLLPIVEGTVVKTKYGPV 302

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF+ IL +  + L  QY E
Sbjct: 303 RTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPRNALTKQYIE 362

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+KTEG+ L+FT+D+I+A+A +A  +N+ + +IGARRL T+ME++LEDISF+A +L  + 
Sbjct: 363 LLKTEGVQLEFTDDAIEAIAQLAEEVNNRMENIGARRLHTLMEKLLEDISFNAPELSGQR 422

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ID  +V+  +     + ++  +IL
Sbjct: 423 IIIDERFVKAKLEGLARDVEVSKYIL 448


>gi|108761314|ref|YP_631222.1| ATP-dependent protease ATP-binding subunit HslU [Myxococcus xanthus
           DK 1622]
 gi|123247816|sp|Q1D801|HSLU_MYXXD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|108465194|gb|ABF90379.1| heat shock protein HslVU, ATPase subunit HslU [Myxococcus xanthus
           DK 1622]
          Length = 459

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/457 (47%), Positives = 315/457 (68%), Gaps = 27/457 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI+++GPTGVGK
Sbjct: 4   FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE   ++V  +A
Sbjct: 64  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 123

Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164
              AE+R+++ + G    S++                      RE FR +LR G + D E
Sbjct: 124 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 183

Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +++E A++S   +  F   G   +G+ NL +LF  V G  + ++ R+ V +    L ++E
Sbjct: 184 VEVETAESSPTFMRGFSGQGMEEIGV-NLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEE 242

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVE 280
           + +L+D D V R+++   E  GI+F+DE DKI +R+ G G G   VSREGVQRD+LP+VE
Sbjct: 243 AAKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVE 302

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L   D   IL +
Sbjct: 303 GSTINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILRE 362

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++L+ QY  L+ TEG+ L FT+D++  LA +A   N +  +IGARRL T++ER+L+++
Sbjct: 363 PKNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEV 422

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SFSAS++  +   +DA YVR  +     + D+  +IL
Sbjct: 423 SFSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 459


>gi|290968894|ref|ZP_06560431.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781190|gb|EFD93781.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 457

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/458 (47%), Positives = 309/458 (67%), Gaps = 22/458 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T   +P+EIV EL++YI+GQ +AK++VAIALRNRWRR+ LPAD++DE++PKNILL+G
Sbjct: 1   MMGTAELTPKEIVRELNKYIVGQAEAKKSVAIALRNRWRRKHLPADMQDEIIPKNILLIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L GAPFIKVE TK+TE+GYVGR+VEQIIRDLV  A+ +V+E    
Sbjct: 61  PTGVGKTEIARRLAKLVGAPFIKVEATKYTEVGYVGRDVEQIIRDLVTNAVRMVQEQESR 120

Query: 121 EVREQASINAEERILDALVGK--------------------TATSNTREVFRKKLRDGEI 160
             ++QA   A +RIL     K                    +  S+ R+   +K+   + 
Sbjct: 121 RFQQQAEEAANKRILQIFWPKKEHAADDDHKESTSCTDSVVSVGSDKRQAMLEKISSHQW 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            +KEI+++V+     +    +         N  E+   +M   RKK+ +M+V K      
Sbjct: 181 DEKEIEVKVSPQERPVQGVLMGSSNEELTNNFQEMLGSIM-PKRKKRKKMTVAKAREIFR 239

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLV 279
           ++E ++ +DMD V   +I   E  GIVF+DEFDKI  +  G G   VSREGVQRD+LP+V
Sbjct: 240 QEELEKCLDMDVVIEKAITATEQAGIVFIDEFDKIAEKSRGGGSPDVSREGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG++V+TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL   DF+ ILT
Sbjct: 300 EGATVNTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLTAEDFKRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +   +L+ QYK L++T+G+ LDFT + I+ALA+ A  +N    +IGARRL T++E++LED
Sbjct: 360 EPNQSLVKQYKALLQTDGVDLDFTAEGIEALAEYAYRVNLETENIGARRLHTMLEKILED 419

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           I+F+A D+ EKT+ +  E+V   +G     TD+ H+IL
Sbjct: 420 IAFAAPDITEKTIPVTKEFVDEKLGTVVDNTDLSHYIL 457


>gi|307728177|ref|YP_003905401.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1003]
 gi|307582712|gb|ADN56110.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1003]
          Length = 448

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/448 (48%), Positives = 311/448 (69%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+   RES   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRTK 122

Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L+        G +++        S TR+ FRK+LR+G + DKEI+++V
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TV IDA YV   + +   + D+  ++L
Sbjct: 421 NTVKIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|220904285|ref|YP_002479597.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254802302|sp|B8IZJ2|HSLU_DESDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219868584|gb|ACL48919.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 437

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 310/437 (70%), Gaps = 7/437 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+EL+++++GQ+ AKR VA+A+RNRWRRQ LP+DLRDE+ PKNI+++GPTGVG
Sbjct: 3   TLTPREIVAELNKFVVGQEQAKRMVAVAVRNRWRRQHLPSDLRDEVSPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+     VR+ 
Sbjct: 63  KTEIARRLARLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRDEENARVRKA 122

Query: 126 ASINAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFD 180
           A   AE R++D L+    G+   ++TRE   ++ R G + ++E+++EV +     +  F 
Sbjct: 123 AEAAAESRLMDLLLPNSFGQEERASTREKLLQQFRLGFLDEREVEMEVTEQGGGGVDIFA 182

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           IPG   +G   + ++FSK       ++ +M ++  +  L+++ES +L+D D + + + + 
Sbjct: 183 IPGMEQMG-GQVKDMFSKAFPPKHSRR-KMKIRDAFNVLVQEESGKLVDQDALSQRAKER 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GI+F+DE DKI +        +SREGVQRDLLP+VEGSSV+TKYG I TDHILFIA
Sbjct: 241 VEQTGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSSVNTKYGMIRTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAFH S+P+D++PE+QGRFP+RV L++L + +F  ILT+ ++ L  QY+ L+ TE I L
Sbjct: 301 AGAFHFSKPSDMIPELQGRFPLRVELQALGREEFLRILTEPDNALTKQYEALLGTEQIRL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT D ++ +A  A ++NS   +IGARRL T+ME++L DISF A D+    +V++ +YV 
Sbjct: 361 SFTMDGLEEIAAFAEDINSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNKDYVV 420

Query: 421 LHIGDFPSETDMYHFIL 437
            H+ D   + D+  +IL
Sbjct: 421 EHLQDVRGDQDLTQYIL 437


>gi|258544137|ref|ZP_05704371.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium
           hominis ATCC 15826]
 gi|258520645|gb|EEV89504.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium
           hominis ATCC 15826]
          Length = 456

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/449 (50%), Positives = 308/449 (68%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+   +R E+ PKNIL++GPTGV
Sbjct: 10  LNMTPREIVEELDRHIIGQKAAKRAVANALRSRWRRRQIAEPMRSEITPKNILMIGPTGV 69

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDLV+ ++ + RE  R +V+ 
Sbjct: 70  GKTEIARRLAKLAEAPFVKVEATKFTEVGYVGRDVDSIIRDLVETSLKLERERARKQVQT 129

Query: 125 QASINAEERILDALV--GKTATS-----------NTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   A ER+LDALV   K ATS             R+ +R+++   E++DK I+IEV D
Sbjct: 130 KAREAALERVLDALVPLAKGATSWHDGANVPEDNPARKTYRERILREELNDKIIEIEVRD 189

Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           T +  ++ +I  P G       LSELF   +G  R  K ++ +     +L  +E+D+L+ 
Sbjct: 190 TPTS-AHVEIMAPPGMEDMSSQLSELFQN-LGKQRTSKQKIKIADALVQLAEEEADKLVS 247

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              + + +I   E  GIVF+DE DK+  R    G  VSREGVQRDLLPLVEGS+VSTKYG
Sbjct: 248 EADIKQQAIANAEQNGIVFIDEIDKVAKRSDVGGADVSREGVQRDLLPLVEGSTVSTKYG 307

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+++P+DL+PE+QGR PVRV L +LN  DFR ILT+ + +LI QY
Sbjct: 308 MIKTDHILFIASGAFHLAKPSDLIPELQGRMPVRVELDALNVDDFRRILTEPDHSLIKQY 367

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L+ TE + L+FT+D I+ +A++A ++N T  +IGARRL T+MER+ E +SF A+D  +
Sbjct: 368 TALLATESLHLEFTDDGIEKIAEIAYHVNKTTENIGARRLHTLMERLTESLSFEAADRPD 427

Query: 410 -KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA YV   +G+     D+  F+L
Sbjct: 428 GDHIRIDAAYVENALGELSQNEDLSRFVL 456


>gi|27804891|gb|AAO22925.1| HslU-like protein [Myxococcus xanthus]
          Length = 465

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/457 (47%), Positives = 315/457 (68%), Gaps = 27/457 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI+++GPTGVGK
Sbjct: 10  FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE   ++V  +A
Sbjct: 70  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 129

Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164
              AE+R+++ + G    S++                      RE FR +LR G + D E
Sbjct: 130 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 189

Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +++E A++S   +  F   G   +G+ NL +LF  V G  + ++ R+ V +    L +++
Sbjct: 190 VEVETAESSPTFMRGFSGQGMEEIGV-NLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEK 248

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVE 280
           + +L+D D V R+++   E  GI+F+DE DKI +R+ G G G   VSREGVQRD+LP+VE
Sbjct: 249 AAKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVE 308

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L   D   IL +
Sbjct: 309 GSTINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILRE 368

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++L+ QY  L+ TEG+ L FT+D++  LA +A   N +  +IGARRL T++ER+L+++
Sbjct: 369 PKNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEV 428

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SFSAS++  +   +DA YVR  +     + D+  +IL
Sbjct: 429 SFSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 465


>gi|295675157|ref|YP_003603681.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1002]
 gi|295435000|gb|ADG14170.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1002]
          Length = 448

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122

Query: 126 ASINAEERILDALV--------GKTATSN--------TREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L+        G + +S         TR+ FRK+LR+G++ DKEI+++V
Sbjct: 123 AGDLAEDRILDILLPTARPVGFGSSTSSTDTADEGSTTRQTFRKRLREGQLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKSKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +   + D+  ++L
Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|320105389|ref|YP_004180979.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus
           saanensis SP1PR4]
 gi|319923910|gb|ADV80985.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus
           saanensis SP1PR4]
          Length = 534

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/446 (49%), Positives = 305/446 (68%), Gaps = 45/446 (10%)

Query: 4   TFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           TF   +PREIV+ELD+Y++GQQ AKRAVAIALRNR RRQ+LP +L D++MPKNI+++GPT
Sbjct: 15  TFEEMTPREIVAELDKYVVGQQAAKRAVAIALRNRQRRQKLPPELADDIMPKNIIMIGPT 74

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE IIRDL ++AI++VRE + +EV
Sbjct: 75  GVGKTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIIRDLAEIAIDMVREEKMEEV 134

Query: 123 REQASINAEERI--------------------------------LDALVGKTATSNTREV 150
            ++A +NAEER+                                 D    +T  S TRE 
Sbjct: 135 EDKAEMNAEERLLDLLLPPSPVTTPTPSNPEEVLAEPVALEAEGTDKAKEETPGSRTREK 194

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPG---------GASVGILNLSELFSKVMG 201
            R + R+G++ ++ ++I+V D +    NF++ G             G +NL ++   + G
Sbjct: 195 LRMQFREGKLDERIVEIDVRDRNQ--PNFEVVGVQGGDDADATGPNGGMNLKDMLPGLFG 252

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
             R +K +M V + +  L+ +E  RLIDMD V R +I  VE+ GIVFLDE DKI  R+ G
Sbjct: 253 P-RSRKRKMKVAEAFEYLISEEESRLIDMDQVTRVAIDRVEDSGIVFLDEIDKIAGREGG 311

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
           +G  +SREGVQRD+LP+VEG++V+TKYG I+TDHILFIA+GAFHVS+P+DL+PE+QGRFP
Sbjct: 312 HGPDISREGVQRDILPIVEGTTVNTKYGMISTDHILFIAAGAFHVSKPSDLIPELQGRFP 371

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +RV L SL   DF  ILT+ +S+L+ Q   LM TEG+ L+FT +++  +A  A N+N   
Sbjct: 372 IRVELHSLTVEDFVRILTEPKSSLVKQSIALMGTEGLKLEFTPEALSEMASFAFNVNEQT 431

Query: 382 GDIGARRLQTVMERVLEDISFSASDL 407
            +IGARRL T+MERVL++ISF A D+
Sbjct: 432 ENIGARRLHTIMERVLDEISFQAPDI 457


>gi|51246547|ref|YP_066431.1| ATP-dependent protease ATP-binding subunit [Desulfotalea
           psychrophila LSv54]
 gi|62286794|sp|Q6AJQ6|HSLU_DESPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|50877584|emb|CAG37424.1| probable ATP-dependent protease, ATP-binding subunit HslU
           [Desulfotalea psychrophila LSv54]
          Length = 457

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/459 (47%), Positives = 319/459 (69%), Gaps = 24/459 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M ++ + +P+E ++ELDRYI+GQ  AKR+VAIALRNRWRRQQ+P+ LR+E+ PKNI+++G
Sbjct: 1   MTISSSLTPKETLAELDRYIVGQAAAKRSVAIALRNRWRRQQVPSPLREEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDLV++AI++V++  + 
Sbjct: 61  PTGVGKTEIARRLASLAQSPFIKVEASKFTEVGYVGRDVESMIRDLVELAISMVKDEEKK 120

Query: 121 EVREQASINAEERILDALVGKT-------------------ATSNTREVFRKKLRDGEIS 161
            +   A  NAE+RILD L+  T                   A S+T+E FR+ LRDG++ 
Sbjct: 121 RIEGLAEANAEDRILDLLLPPTPVHSESSVDLLPASADVSAAGSSTKEKFRQMLRDGKL- 179

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           D+         +S     ++ G + +  +  N+ + FS+ M   + K+ +M V      L
Sbjct: 180 DEREVEVEVTETSQAPMVEVMGVSGMDDMQSNIQDAFSR-MFPKKTKQSKMKVPDALDVL 238

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPL 278
            ++E ++L+DM+ V +++++  E  GIVFLDE DK+ ++  S +G  VSREGVQRDLLP+
Sbjct: 239 TKEEMEKLVDMEMVLKEALRRTEQSGIVFLDEIDKVASKGGSSHGPEVSREGVQRDLLPI 298

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEG++VSTKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL K +F  IL
Sbjct: 299 VEGATVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLGKDEFVRIL 358

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ E+ L  QY  L+ TEG+ L F +++I+ +A +AV +N +  +IGARRL TV+ERVL+
Sbjct: 359 TEPENALTKQYIALLATEGVTLRFEDEAIEEIATIAVQVNESTEEIGARRLHTVVERVLD 418

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +SF A + +E   V+ A+YVR  + +   + D+  +IL
Sbjct: 419 VLSFDACEREESEFVVTAQYVRDQLSEIAEDQDLSRYIL 457


>gi|150021490|ref|YP_001306844.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho
           melanesiensis BI429]
 gi|149794011|gb|ABR31459.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho
           melanesiensis BI429]
          Length = 465

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/457 (46%), Positives = 320/457 (70%), Gaps = 28/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIV ELD++I+GQ++AK+AVAIA+RNR RRQ+LP   + E+ PKNIL++GPTGVG
Sbjct: 12  KLTPKEIVHELDKFIVGQREAKKAVAIAIRNRIRRQKLPEQWKKEITPKNILMIGPTGVG 71

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IR+LV++++N+V++ +  +V E+
Sbjct: 72  KTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRELVEISVNMVKQRKMKKVEER 131

Query: 126 ASINAEERILDALV---GKTAT----------------------SNTREVFRKKLRDGEI 160
           A +N EERILDAL+    KT                        S  RE  R+KLR GE+
Sbjct: 132 AKVNVEERILDALLPSRKKTQIPFANIFGMQPEKVQSIEESENLSAKREELRQKLRKGEL 191

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            + EI+IE+  +++ I    +P    +G ++LS +   +    RKK+ +M +      L+
Sbjct: 192 DNDEIEIEIETSNTPIGFIGLPEMEDIG-MDLSNVLGNIFPKQRKKR-KMKISDAKKILL 249

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
             E ++LIDMD   ++++++ +N GI+F+DE DKI A+ SG+G  VSR+GVQRDLLP+VE
Sbjct: 250 PIEEEKLIDMDETIQEALEIAQNRGIIFIDEMDKIAAKTSGSGQDVSRQGVQRDLLPIVE 309

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++++TKYG + TD ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF  IL +
Sbjct: 310 GTTITTKYGPVRTDFILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTEEDFVRILVE 369

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            E+ L  QY+ L+ TEG+ L+F+ + I+ +A V+  LN  + +IGARRL TV+E++LED+
Sbjct: 370 PENALTKQYQALLYTEGVQLEFSMEGINEIAKVSYRLNQKLENIGARRLYTVIEKILEDV 429

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F A ++ EK V+ID ++V   + D   + D+  +IL
Sbjct: 430 LFEAPEISEK-VIIDDKFVTERLKDIIEDEDLTSYIL 465


>gi|91781465|ref|YP_556671.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans
           LB400]
 gi|123169129|sp|Q146X0|HSLU_BURXL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91685419|gb|ABE28619.1| Heat shock protein HslU [Burkholderia xenovorans LB400]
          Length = 448

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/448 (47%), Positives = 312/448 (69%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122

Query: 126 ASINAEERILDAL------VGKTATS----------NTREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L      VG  A+S           TR+ FRK+LR+G + DKE++++V
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSGAADTVDEGSTTRQTFRKRLREGLLDDKEVELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ R+++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAARMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +   + D+  ++L
Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|198284455|ref|YP_002220776.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666220|ref|YP_002427122.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226704514|sp|B7J8H7|HSLU_ACIF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238689973|sp|B5ENS6|HSLU_ACIF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|198248976|gb|ACH84569.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518433|gb|ACK79019.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/439 (49%), Positives = 304/439 (69%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR Q+P  L  E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVQELDKYIIGQSEAKRAVAIALRNRWRRGQVPPPLHQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL + A++++R  R+  +R++A
Sbjct: 64  TEIARRLAQLANAPFIKVEATKFTEVGYVGKDVESIIRDLTETAVDMIRNERQVALRQRA 123

Query: 127 SINAEERILDALVGKTATSN-------TREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              AEERILD L+     S+       TR+ FRK LR+G++  +EI+IEV+     +   
Sbjct: 124 EELAEERILDILIPGPRDSSVPRSDEGTRQKFRKMLREGKLDAQEIEIEVSAPKGGVEIM 183

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L E+FS  M  G+    R++V +    L  DE+ +L++ + V   +++
Sbjct: 184 -APAGMEEMTNQLREMFSN-MAPGKTSTRRVTVSEAQRLLTDDEAAKLVNEEEVRALALE 241

Query: 240 MVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            V++ GIVF+DE DK+  R  +  G  VSREGVQRDLLPLVEGS+VST+YG + TDHILF
Sbjct: 242 RVQSGGIVFIDEIDKVAVRSGTQQGSDVSREGVQRDLLPLVEGSNVSTRYGVVKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D   IL + E+ L+ QY  L+ ++G+
Sbjct: 302 IASGAFHLSKPSDLIPELQGRLPIRVELEALSAADLVRILQEPENALVRQYGALLASDGL 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D +  +A++A  +N  V +IGARRL TVMER+LE+++F A D     + +DA Y
Sbjct: 362 ALHFTQDGVQRIAEIAQQVNERVENIGARRLHTVMERLLEEVAFVAPDGSTTALEVDAAY 421

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   + D   + D+  +IL
Sbjct: 422 VDSRLKDLAQDEDLSRYIL 440


>gi|21672818|ref|NP_660885.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|22654256|sp|Q9Z617|HSLU_BUCAP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21623470|gb|AAM68096.1| heat shock protein HslU [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 443

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/442 (49%), Positives = 302/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVSEL+++IIGQ+ AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPPQIVSELNKFIIGQEQAKKAVAIALRNRWRRMQLNNELRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R    ++ + + 
Sbjct: 64  TEIARRLAKLANSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRVKNIEKNKLRV 123

Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               EERILD LV +   +           NT +VFRKKLR+G + +KEI+I V  ++  
Sbjct: 124 EEIVEERILDVLVPRPKNNWTENEKNESLLNTLQVFRKKLREGILDEKEIEINVLASTMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLLKEEEAAKLINQEEIKK 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTKYG + TDH
Sbjct: 242 EAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLVEGCTVSTKYGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF  S P+DL+PE+QGR P++V L+ L  +DF  ILT+  +++  QYK LMKT
Sbjct: 302 ILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILTEPTASITAQYKALMKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT++ I  +A+ A  +N ++ +IGARRL T++E+++EDISF+A D   KT+ I+
Sbjct: 362 EGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMEDISFNACDNVGKTIEIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           +EYV  H+    S  D+  FIL
Sbjct: 422 SEYVGKHLDQLISNEDLGRFIL 443


>gi|317050675|ref|YP_004111791.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum
           indicum S5]
 gi|316945759|gb|ADU65235.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum
           indicum S5]
          Length = 441

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/440 (48%), Positives = 306/440 (69%), Gaps = 9/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV+ELD+YIIGQ +AK+AVAIALRNRWRRQ+L + LR+E+ PKNI+++GPTGVG
Sbjct: 3   QLTPSQIVAELDKYIIGQTEAKKAVAIALRNRWRRQRLDSFLREEISPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PFIKVE +KFTE+GYVGR+VE IIRDL + ++ +V++      ++Q
Sbjct: 63  KTEIARRLAKLTNSPFIKVEASKFTEVGYVGRDVESIIRDLTEASVKMVKDELVKRYQDQ 122

Query: 126 ASINAEERILDALVGKTATSN---TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           A   A ER+LD ++  + + N   TR+ FRKKL +GE  DKEI+I++      +    +P
Sbjct: 123 AQEAAVERVLDTIIPPSESPNYQDTRQKFRKKLLEGEFDDKEIEIDITMPPPRVEIMGMP 182

Query: 183 G---GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G   G       L ++F  + G+ R+KK +  V+     +  +E+ +L+D + V+  +++
Sbjct: 183 GQQPGMEDFTSGLKDMFGGLFGN-RQKKKKTKVRAALRLIQDEEAAKLVDTEEVNTKAVE 241

Query: 240 MVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +VE  GIVFLDE DKI +       G  VSREGVQRD+LP+VEGS+VSTKYG + TDHIL
Sbjct: 242 LVEQSGIVFLDEIDKIASSQEVRKGGADVSREGVQRDILPIVEGSTVSTKYGMVRTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH S+P+DL+PE+QGRFP+RV L SL K DF  IL++  S L+ QY+ L+ TE 
Sbjct: 302 FIAAGAFHFSKPSDLIPELQGRFPIRVELDSLGKDDFVRILSEPRSALVKQYRHLLATEH 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I LDF  ++I+A+A+ +V  N  + +IGARRL TVME++LE++SF A ++   T+ ID  
Sbjct: 362 ITLDFQPEAIEAIAEYSVQANEKMENIGARRLHTVMEKLLEEVSFHAPEMDSMTIAIDRN 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV L +     + D+  +IL
Sbjct: 422 YVDLRLKKLVEDEDLSRYIL 441


>gi|256828892|ref|YP_003157620.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578068|gb|ACU89204.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium
           baculatum DSM 4028]
          Length = 446

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/447 (49%), Positives = 313/447 (70%), Gaps = 18/447 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD+YI+GQ  AKR VAIALRNRWRR+QL  +L +E+ PKNIL++GPTGVG
Sbjct: 3   TLTPREIVSELDKYIVGQTQAKRMVAIALRNRWRRRQLDPELAEEIAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG+PFIKVE TKFTE+GYVGR+VE IIRDL+++ +N+VR+     VR +
Sbjct: 63  KTEIARRLAKLAGSPFIKVEATKFTEVGYVGRDVESIIRDLMEIGVNLVRQEEEASVRIK 122

Query: 126 ASINAEERILDALVG---------------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           A ++AEER+LD L+                  A  +TRE  R+  R G++ D+ +++EVA
Sbjct: 123 AEVSAEERLLDLLLPTKPLESAGIDYIGPESQAEGSTREKLRQLWRAGKLDDRMVEVEVA 182

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            T   +    +PG   +  + + ++FSKV    +KK  +++V+  Y  L++ E +RLIDM
Sbjct: 183 -TGGGVQVMGVPGMEGME-MQMQDMFSKVFPK-KKKTKKVAVKSAYDILIQSECERLIDM 239

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D VH  + + V+  GIVFLDE DKI   +S     VSREGVQRDLLP+VEGS+V+TKYG 
Sbjct: 240 DKVHETARERVQESGIVFLDEIDKICGANSSGKADVSREGVQRDLLPIVEGSTVNTKYGM 299

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + +DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L +L K DF  ILT+ ++ L +QYK
Sbjct: 300 VRSDHILFIAAGAFHMSKPSDLVPELQGRFPLRVELSALTKEDFYRILTEPKNALTVQYK 359

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + + +T++++  +A  A  +N    +IGARRL T+ME+++ D+SF A D+++ 
Sbjct: 360 ALLGTEKVEITYTDEALLEIARFAQKINEETENIGARRLYTIMEKIVSDLSFDAPDMEQA 419

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV ID +YV   + D   + D+  +IL
Sbjct: 420 TVTIDKDYVAKALLDVQEDRDLTRYIL 446


>gi|296161395|ref|ZP_06844202.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           Ch1-1]
 gi|295888381|gb|EFG68192.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           Ch1-1]
          Length = 448

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 313/448 (69%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122

Query: 126 ASINAEERILDAL------VGKTATSN----------TREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L      VG  A+S+          TR+ FRK+LR+G + DKE++++V
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSSAADTVDEGSTTRQTFRKRLREGLLDDKEVELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAAKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +   + D+  ++L
Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|167561103|ref|ZP_02354019.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis EO147]
          Length = 447

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/449 (48%), Positives = 314/449 (69%), Gaps = 21/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDK--EIDIEV 169
           A+  AE+RILD L      VG  A +         TR+ FRK+LR+G++ DK  E+DIE 
Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGAGAEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQ 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                DI     P G       +  +FS  +G G+K + ++ +++    L  +E+ ++++
Sbjct: 183 PTVGMDIM---APPGMEEMTEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLN 238

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKY
Sbjct: 239 EEEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKY 298

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ Q
Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQ 358

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +  
Sbjct: 359 YQALLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHA 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++V IDA YV   +G+   + D+  ++L
Sbjct: 419 GQSVTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|312797560|ref|YP_004030482.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Burkholderia rhizoxinica HKI 454]
 gi|312169335|emb|CBW76338.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Burkholderia rhizoxinica HKI 454]
          Length = 448

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/447 (48%), Positives = 308/447 (68%), Gaps = 19/447 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 6   TMTPAEIVSELDKHIIGQGRAKRAVAVALRNRWRRQQVLDPLRQEITPKNILMIGPTGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++   RES   +VR +
Sbjct: 66  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTRESEMRKVRTK 125

Query: 126 ASINAEERILDAL------VGKTATSN-------TREVFRKKLRDGEISDKEI--DIEVA 170
           A   AE+RILD L      VG + TS        TR+  RK+LR+G++ DKEI  DIE  
Sbjct: 126 AQDLAEDRILDILLPQARPVGFSPTSEESERESATRQTLRKRLREGQLDDKEIELDIEAP 185

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               DI     P G       +  +F+  +G G+K+  ++ +++    L  +E+ ++++ 
Sbjct: 186 QVGMDIMG---PPGMEEMTEQIRSMFAN-LGGGKKQHRKVKIKEALKLLTDEEAGKMVNE 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   ++Q  E  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EDIKTRAVQNAEQNGIVFLDEIDKIASRQEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVGDFESILVRTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE+ISFSA +   +
Sbjct: 362 ALLATEDVHLEFADDGIKRLAEIAFSVNEKTENIGARRLYTVIEKLLEEISFSAGNHSGQ 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V IDA YV   + D     D+  ++L
Sbjct: 422 SVKIDAAYVDSALNDVSQNEDLSRYVL 448


>gi|301118923|ref|XP_002907189.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora
           infestans T30-4]
 gi|262105701|gb|EEY63753.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora
           infestans T30-4]
          Length = 517

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/435 (50%), Positives = 301/435 (69%), Gaps = 7/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             PRE+V +L++YI+GQ DAKRAVAIALRNRWRRQ++  +LR E+ PKNIL++GPTG GK
Sbjct: 86  LKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGK 145

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+ APF+KVE TKFTE+G+ GR+V+QIIRDLV+ AIN+V++ R++ +R+Q 
Sbjct: 146 TEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQV 205

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP--GG 184
               E RILD L G      +R  F + LR GE+ D+ I+ +V   S++  N  I   GG
Sbjct: 206 QHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVP-VSTNPGNQPISFVGG 264

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              GI    E+F +  G  + ++ RM++ +        E +  IDM  V R++IQ  E  
Sbjct: 265 EGKGI--SMEVFGRAFGEKKTERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEEN 322

Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DKI +  D       S EGVQRDLLPL+EGS +STK+G++NTDHILF+ SGA
Sbjct: 323 GIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGA 382

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH S+P+DLL E+QGR P+RV LK L + D   ILT+  +NLI Q  EL+KTEG+ L+FT
Sbjct: 383 FHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIKTEGVTLNFT 442

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +D++  +A VA  +N T+ +IGARRL TV+E+V+EDISF +S+++   TV I AE+V   
Sbjct: 443 DDAVREIARVAAEINQTIENIGARRLHTVVEKVVEDISFDSSEMEAGSTVTITAEFVLER 502

Query: 423 IGDFPSETDMYHFIL 437
           +G    +TD+  FIL
Sbjct: 503 VGKLMKKTDLSKFIL 517


>gi|308271351|emb|CBX27959.1| ATP-dependent hsl protease ATP-binding subunit hslU [uncultured
           Desulfobacterium sp.]
          Length = 457

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/457 (47%), Positives = 308/457 (67%), Gaps = 27/457 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P EIV ELD+YIIGQ  AK++VAIALRNRWRRQQ+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   NLKPSEIVKELDKYIIGQNKAKKSVAIALRNRWRRQQVPDDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L  +PF KVE +KFTE+GYVGR+VE ++RDL+++ +N V+   +++V+E+
Sbjct: 63  KTEIARRLSKLTDSPFNKVEASKFTEVGYVGRDVESMVRDLLELTVNAVKSKEQEDVKEK 122

Query: 126 ASINAEERILDALVGKTA------------------------TSNTREVFRKKLRDGEIS 161
           A I AEER+LD L+ KT                          S TR   R  LR G++ 
Sbjct: 123 AMIIAEERMLDILLPKTNRQEVDNKNESGETGLEPVNAESTDLSATRNKLRDMLRKGKLD 182

Query: 162 DKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           D+ ID++V++     I  F   G   +G+ N  ++   +M    KK+ ++ V +    L 
Sbjct: 183 DRIIDLDVSERQMPVIEVFSNLGMEEMGV-NFKDMLGGLMPKNTKKR-KVKVSEAMEILT 240

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            DES RL+DMD V + +I  VE  GI+F+DE DKIV ++ G+G  VSREGVQRDLLP+VE
Sbjct: 241 LDESQRLVDMDKVVKSAILKVEQSGIIFIDEIDKIVGKNGGSGPDVSREGVQRDLLPIVE 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+++TKYG + TDHILFIASGAFH  +P+DL+PE+QGRFP+RV L++L + +F  IL +
Sbjct: 301 GSTITTKYGPVKTDHILFIASGAFHAVKPSDLIPELQGRFPIRVELEALGQKEFVRILKE 360

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L++QY  ++KTEG+ + F  ++I+ +A +A  +N+   +IGARRL T+ME +LEDI
Sbjct: 361 PKNALLIQYIAMLKTEGVNIVFEPEAIEEIARIAEEVNNHTENIGARRLHTIMECLLEDI 420

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F A D+  K VVIDA  V   + D     D+  +IL
Sbjct: 421 LFDAPDMPGKDVVIDANSVSSKLNDIKDNEDLSRYIL 457


>gi|219669729|ref|YP_002460164.1| ATP-dependent protease ATP-binding subunit HslU [Desulfitobacterium
           hafniense DCB-2]
 gi|254802303|sp|B8FRG8|HSLU_DESHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219539989|gb|ACL21728.1| heat shock protein HslVU, ATPase subunit HslU [Desulfitobacterium
           hafniense DCB-2]
          Length = 458

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/459 (47%), Positives = 319/459 (69%), Gaps = 30/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V ELDRYI+GQ  AKRAVAIALRNR+RR  LP  +++E++PKNIL++GPTGVG
Sbjct: 3   QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+  + +EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122

Query: 126 ASINAEERILDALV-GKTATSNT-------------------------REVFRKKLRDGE 159
           A+  AE+R+   LV GK   +N+                         R   R++L  GE
Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + ++ I++EV D    + +F +  G  +   NL ++ + ++   R K+ +++V++    L
Sbjct: 183 LDEQVIEVEVEDNQPLLPDF-LGTGMEINT-NLQDMMAGMLPKKRHKR-KVTVREARRIL 239

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ +LID D   +++I+ VE  G+VFLDE DKI  RD  +G  VSR GVQRD+LP+V
Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT
Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +S+LI QY  L++TEGI ++FTE++ID LA VA  +NS   +IGARRL T++ERVLE+
Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419

Query: 400 ISFSASDLQEK-TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS+L E  TV I+ EY++  +G+     D+  +IL
Sbjct: 420 LSFEASELPEDYTVTINREYIQHRLGNIVRNQDLSRYIL 458


>gi|172057893|ref|YP_001814353.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium
           sibiricum 255-15]
 gi|229486076|sp|B1YIA9|HSLU_EXIS2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|171990414|gb|ACB61336.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium
           sibiricum 255-15]
          Length = 456

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/458 (46%), Positives = 313/458 (68%), Gaps = 32/458 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PR+IV +L+ ++IGQ DAKRAVAIALRNR+RRQ L   LRDE+ PKNIL++GPTGVGK
Sbjct: 4   FTPRQIVEKLNEHVIGQADAKRAVAIALRNRYRRQLLDPSLRDEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V++ +++ ++E+A
Sbjct: 64  TEIARRLAKLVRAPFVKIEATKFTEVGYVGRDVESMVRDLVEASLRLVKDEKKEALKERA 123

Query: 127 SINAEERILDALVGKTATSNT---------------------------REVFRKKLRDGE 159
              A ERI+DALVGK A++                             R V R++L  G+
Sbjct: 124 EAVANERIVDALVGKKASTGLGGGNPFEMLFGGTQKPPEQETANDTADRSVIRQQLFQGQ 183

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+ ID+++ +   D+  F    G   G+ NL ++  +VM    KK+ ++SV++  P L
Sbjct: 184 LEDRMIDVDIEERQMDL--FSGQQGME-GLANLQDMLGQVMPKKTKKR-QLSVKEARPIL 239

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E++RL+D++ VH ++++  E  GI+F+DE DKI  +   +  GVSREGVQRD+LP+V
Sbjct: 240 TAEEAERLLDLNEVHDEAVRRAEQMGIIFVDEIDKIATKGQ-DSAGVSREGVQRDILPIV 298

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF  ILT
Sbjct: 299 EGSTVVTKYGPVKTDHMLFIAAGAFHMAKPSDLIPELQGRFPIRVELDSLTEDDFVKILT 358

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +    L+ QYK L+  E + + FTED+I  +A +A  +N    +IGARRL T+MERVLE+
Sbjct: 359 EPNQALLKQYKALLGAEQVHVTFTEDAIRQIARIAAQVNDETDNIGARRLYTIMERVLEE 418

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A+++ E  V I  +YV   +G    + D+  FIL
Sbjct: 419 LSFEAAEMPETDVTITPQYVMDRVGKVADDRDLSQFIL 456


>gi|295698589|ref|YP_003603244.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia
           pediculicola USDA]
 gi|291157288|gb|ADD79733.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia
           pediculicola USDA]
          Length = 445

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/445 (49%), Positives = 304/445 (68%), Gaps = 17/445 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDNYIIGQEKAKRSVAIALRNRWRRMQLNESLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++     ++ + +A
Sbjct: 64  TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMIHLQSIEKNKNRA 123

Query: 127 SINAEERILDAL---VGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADT 172
              AEE+ILD L   + K  +S            TR+  R+KLR+GE+ DKEI+IEV+ +
Sbjct: 124 EEVAEEKILDILSTHIIKNKSSWGDQKENDLKNFTRQSLRRKLRNGELDDKEIEIEVSAS 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              I     PG   +    L  +F  + G  +K K     Q     ++++E+ RL++ + 
Sbjct: 184 PMGIEIMAPPGMEEM-TSQLQSMFQNLAGQKQKSKKMKVKQAF--RVLKEEAARLVNPEE 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + +I  VE  GIVF+DE DKI  +       VSREGVQRDLLPLVEG +VSTK+G + 
Sbjct: 241 LKQKAIDTVEQNGIVFIDEIDKICRKGHSTNSDVSREGVQRDLLPLVEGCTVSTKHGMVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L +QYKEL
Sbjct: 301 TDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTANDFKRILTEPNASLTMQYKEL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ ++FT+D I  +A+VA  +N    +IG+RRL T++ER++ED+SFSA +   +T+
Sbjct: 361 MLTEGLNIEFTQDGISKIAEVAWKVNEKTENIGSRRLHTILERLMEDLSFSADERSGETI 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +ID+ YV  H+ +  S  D+  FIL
Sbjct: 421 IIDSNYVSSHLDELVSNEDLSRFIL 445


>gi|320528983|ref|ZP_08030075.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis
           F0399]
 gi|320138613|gb|EFW30503.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis
           F0399]
          Length = 464

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/457 (48%), Positives = 309/457 (67%), Gaps = 29/457 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL  D+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR  + +EV+E+A+
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129

Query: 128 INAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEISD 162
            NAEER++D  V     S                           R+  RK+L  GE+ D
Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEEPAEEKQEPPKYQAGRDWVRKRLHAGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + I+I+V ++S  ++     G +  G+  NL  +   ++   R+++     Q        
Sbjct: 190 EMIEIDVEESSRPMAGM-FAGSSLEGVGDNLQSMIGSLVPKRRRRRKVSVRQ-ARKLFTA 247

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280
           +E+D+L+DMD V  +++   E  GIVFLDE DKI V     +G  VSREGVQRD+LP+VE
Sbjct: 248 EEADKLVDMDVVADEAVHAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVE 307

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+
Sbjct: 308 GSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTE 367

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ LI QY  L+  EG+ L F +D++  LA++A  +N    DIGARRL T++E++LED+
Sbjct: 368 PKNALIKQYAALLGAEGVTLTFGDDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLEDL 427

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL EK +VID  YV  ++ D   + DM  FIL
Sbjct: 428 SFDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464


>gi|325295312|ref|YP_004281826.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065760|gb|ADY73767.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 477

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/461 (47%), Positives = 314/461 (68%), Gaps = 35/461 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+P+EIV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP ++RDE+ PKNI+++GPTGVGK
Sbjct: 22  FTPKEIVKELDKYIVGQHEAKKAVAIALRNRWRRQRLPEEMRDEVAPKNIIMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +V+E + + V E+A
Sbjct: 82  TEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVTMVKEEKMETVMERA 141

Query: 127 SINAEERILDALVGKTATS-----NTREVF-------------------------RKKLR 156
              A +R+ + +V +  TS     N  +VF                         +K L+
Sbjct: 142 RELAYDRLAEIMVPEPQTSQQSIQNLFDVFFSPQKNLNQDLEKEQSRLKDERNRIKKLLK 201

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ ++ ++I V   +  I+   I G  +    NL ++ S ++   +K +     +   
Sbjct: 202 EGKLDEEVVEIAVTVETPGINVIGIGGDMA----NLQDMLSSILPKPKKMRKMKVKE-AL 256

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+ +LIDMD V R++I  VEN GIVF+DE DK+ A+  G G  VSREGVQRDLL
Sbjct: 257 RYLTQEEAQKLIDMDEVVREAIDRVENQGIVFIDEIDKVAAKSGGKGPDVSREGVQRDLL 316

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS VSTKYG + TDHILFIA+GAFH+++P+DLLPE+QGRFP+RV LK L K DF  
Sbjct: 317 PIVEGSKVSTKYGLVRTDHILFIAAGAFHIAKPSDLLPELQGRFPIRVELKPLTKEDFVR 376

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ L  QYK L+ TEG+ ++FT D I+ +A +A   N+   +IGARRL TV+E++
Sbjct: 377 ILTEPKNALTKQYKALLGTEGVEIEFTPDGIEEIARIAEEANTKAENIGARRLHTVLEKL 436

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LE+ISF+A  ++ + ++ID EYVR  + +     D+  +IL
Sbjct: 437 LEEISFNAPSMKGEKILIDREYVRNKLENIIESEDLTKYIL 477


>gi|167630283|ref|YP_001680782.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium
           modesticaldum Ice1]
 gi|167593023|gb|ABZ84771.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium
           modesticaldum Ice1]
          Length = 464

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 317/461 (68%), Gaps = 30/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV ELDR+I+GQQ AK+AVAIALRNR+RRQ LP +LRDE+ PKNIL++GPTGVG
Sbjct: 5   NLTPKQIVEELDRHIVGQQAAKKAVAIALRNRYRRQLLPENLRDEVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R +EV+ +
Sbjct: 65  KTEIARRLARLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAERMEEVKTR 124

Query: 126 ASINAEERILDALV-------------------GKTATSNT----------REVFRKKLR 156
           A   AEER+++ LV                   G+T   +           R + R+KL+
Sbjct: 125 ADREAEERLVELLVPQPKAPKNMANPLEMLFGGGQTNQPSPSSDDPGLREKRAIIRQKLK 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             E+ D  I+IEV D +  + +  +  G      N+  +  +++  GRKK+ R++V++  
Sbjct: 185 RLELEDDWIEIEVDDNAMPLGDIFVGSGLDEMGANIQNMLGQILPRGRKKR-RVTVREAR 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L   E+ +LIDMD V R++++  E  GI+FLDE DKI +R+ G G  VSR GVQRD+L
Sbjct: 244 RILAIQEAQKLIDMDAVTREALERAEQSGIIFLDEIDKIASREGGQGPDVSRGGVQRDIL 303

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L++ DF+ 
Sbjct: 304 PIVEGSTVMTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPLRVELEALSRQDFQR 363

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ E +L+ QY  L+ TE + L F E++++A+A +A  +N+   +IGARRL T++E+V
Sbjct: 364 ILTEPEGSLLKQYVALLSTEAVELVFKEEALEAIAAIAYRVNTQTENIGARRLHTILEKV 423

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A DL +K VVID EYV   +       D+  +IL
Sbjct: 424 LEDVSFDAPDLLDKKVVIDKEYVESRLEGILQREDLSRYIL 464


>gi|167568322|ref|ZP_02361196.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis C6786]
          Length = 444

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/448 (48%), Positives = 313/448 (69%), Gaps = 21/448 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDK--EIDIEVA 170
           +  AE+RILD L      VG  A S         TR+ FRK+LR+G++ DK  E+DIE  
Sbjct: 121 TDQAEDRILDILLPQPRAVGFGAGSEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQP 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               DI     P G       +  +FS  +G G+K + ++ +++    L  +E+ ++++ 
Sbjct: 181 TVGMDIM---APPGMEEMTEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLNE 236

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 237 EEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYG 296

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY
Sbjct: 297 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQY 356

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 357 QALLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAG 416

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + V IDA YV   +G+   + D+  ++L
Sbjct: 417 QRVTIDAAYVDRALGEVSRDEDLSRYVL 444


>gi|220931601|ref|YP_002508509.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix
           orenii H 168]
 gi|219992911|gb|ACL69514.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix
           orenii H 168]
          Length = 462

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/462 (47%), Positives = 323/462 (69%), Gaps = 35/462 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV +LD+YI+GQ++AK+AVAIALRNR+RR+++ +DL++E++PKNIL++GPTGVGK
Sbjct: 5   LTPRQIVKKLDKYIVGQEEAKKAVAIALRNRYRRKKIISDLQEEVIPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLAR+A APFIKVEVTKFTE+GYVGR+VE ++RDLV+ AI +V+  +  +V  +A
Sbjct: 65  TEIARRLARIASAPFIKVEVTKFTEVGYVGRDVESMVRDLVETAIRMVKSEKMKDVEHKA 124

Query: 127 SINAEERILD---ALVGKTATSNTREVFRKK-------------------------LRDG 158
              A +RI+D    L GK   +    +F  +                         + +G
Sbjct: 125 RDLAIDRIVDIILPLPGKKRRNPFEVLFSDREENLDDVDSDNYTSLKERRKRLRKRIVNG 184

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRMSVQKC 215
           ++ D+ I+I V   S +   F++  GA V   GI N  ++F  +  + +KK+ ++SV++ 
Sbjct: 185 QLDDQVIEITV--ESQNPQMFEVFSGAGVEEMGI-NFQDMFGNIFPAQKKKR-KVSVKEA 240

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L ++E+ +LIDMD V  ++I+ VEN GI+FLDE DKI  R+SG G  VSREGVQRD+
Sbjct: 241 KEILKQEEAQKLIDMDEVSLEAIKKVENDGIIFLDEIDKIAGRESGKGPEVSREGVQRDI 300

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL++  F+
Sbjct: 301 LPIVEGSTVMTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLSREHFK 360

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL   ++ L  QY+ L++TEGI + FT+++I+ +AD A  +N    +IGARRL T+ME+
Sbjct: 361 QILLQPKNALTKQYEALIETEGIKIKFTDEAIEEIADFAYRVNEQTENIGARRLHTIMEK 420

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF+A D+  + V ID +YVR  + D   + D+  +IL
Sbjct: 421 LLEDVSFNAPDMDVEEVTIDVDYVRNQLADVVQDKDLSKYIL 462


>gi|187922349|ref|YP_001893991.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           phytofirmans PsJN]
 gi|238689476|sp|B2T1N8|HSLU_BURPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|187713543|gb|ACD14767.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           phytofirmans PsJN]
          Length = 448

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEDPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122

Query: 126 ASINAEERILDAL------VGKTATSN----------TREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L      VG  A+S+          TR+ FRK+LR+G + DKEI+++V
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSSAADTVDESSTTRQTFRKRLREGLLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + ++ V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKLKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +   + D+  ++L
Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|170693982|ref|ZP_02885138.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           graminis C4D1M]
 gi|170141054|gb|EDT09226.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           graminis C4D1M]
          Length = 448

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDDPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTK 122

Query: 126 ASINAEERILDAL------VGKTATSNT----------REVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L      VG  ++S+T          R+ FRK+LR+G + DKEI+++V
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGSSSSTIDTADEGGTTRQTFRKRLREGLLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   
Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV IDA YV   + +   + D+  ++L
Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|147677585|ref|YP_001211800.1| ATP-dependent protease ATP-binding subunit HslU [Pelotomaculum
           thermopropionicum SI]
 gi|189043913|sp|A5D2W8|HSLU_PELTS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146273682|dbj|BAF59431.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 465

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/465 (47%), Positives = 311/465 (66%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR IV ELD+YI+GQ++AK+AVAIALRNR+RR++LP D +DE+MPKNIL++GPTGVG
Sbjct: 3   ELTPRRIVEELDKYIVGQKNAKKAVAIALRNRYRRKKLPEDFKDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ +   V ++
Sbjct: 63  KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVEGMVRDLVETSIRMVKQEKMAMVEDR 122

Query: 126 ASINAEERILDAL----VGKTATSNT----------------------------REVFRK 153
           A   AEE+I++ L    V +TA  N                             RE+ R+
Sbjct: 123 AQKMAEEKIIELLAPYPVQQTAARNPLELLFGAARQAEQTDKNQEQRIKRIDFEREMLRE 182

Query: 154 KLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KL  GE+ ++ ++IEV D+   +   F   GG     +NL ++   +    +K K R++V
Sbjct: 183 KLARGELENEYLEIEVEDSKPPMLEIFTASGGMEEMGVNLQDMLGGLFPK-KKHKRRVTV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L + E+ +LIDMD V   +I+  E  GI+FLDE DKI  R+ G G  VSR GVQ
Sbjct: 242 REARKILTQQEAQKLIDMDEVTAAAIKRAEEDGIIFLDEIDKIAGRE-GYGPDVSRGGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL   
Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELESLTCE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT+  + LI QY EL+ TEG+ + FTE+S+  +A +A  +N    +IGARRL T+
Sbjct: 361 DFQQILTEPRNALIKQYTELLATEGVKVKFTENSLVEIAKIAYTVNEQTENIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LEDISF A +L  K +VID E V   +G+     D+  +IL
Sbjct: 421 LEKLLEDISFEAPELTGKEIVIDREIVLEKLGELAKNKDLSRYIL 465


>gi|116747516|ref|YP_844203.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696580|gb|ABK15768.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophobacter
           fumaroxidans MPOB]
          Length = 466

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/463 (47%), Positives = 311/463 (67%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV ELD+YIIGQ+DAKR VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVGK
Sbjct: 5   LTPAEIVQELDKYIIGQRDAKRMVAIALRNRWRRQQVPEHLRDEIAPKNIIMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA +PF+K+E +KFTE+GYVGR+VE +IRDL ++A+++VR    + V+ +A
Sbjct: 65  TEIARRLARLAQSPFLKIEASKFTEVGYVGRDVESMIRDLSELAVSMVRTEEMEAVKIKA 124

Query: 127 SINAEERILDALVGK-------------------------------TATSNTREVFRKKL 155
              AEE++LD L+                                     +TRE  RK L
Sbjct: 125 EELAEEKLLDILLPPKRQQESREQELPVPVEPQEAREPREAAREEAVQADSTREKLRKLL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R G + D+ ++++V D +  +       G      NL ++   ++   R K+ ++ + + 
Sbjct: 185 RKGALDDRYVELDVPDRNFPMVEIFAGTGMEDMDYNLRDMLGSMLPR-RTKRRKVKIPEA 243

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRD 274
              L+++ES RLIDMD V + +I+ VE+ GI+FLDE DKI  R+SG  G  VSREGVQRD
Sbjct: 244 REILVQEESQRLIDMDKVIKSAIERVEHSGIIFLDEIDKIAGRESGGRGPDVSREGVQRD 303

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEGS+V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL K DF
Sbjct: 304 LLPIVEGSTVTTKYGMVKTDHILFIASGAFHISKPSDLIPELQGRFPIRVELASLTKEDF 363

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + E+ LI+QYK L+ TE + L F +++I+ +A +A  +N+   +IGARRL T+ME
Sbjct: 364 VRILKEPENALIVQYKSLLATEEVELTFDDEAIEEIAGLAFQVNARTENIGARRLHTIME 423

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++L DISF+A DL+ + + I  +Y++  + D   + D+  +IL
Sbjct: 424 KLLSDISFNAPDLKGQKIPITRQYIQETLSDIIKDEDLSRYIL 466


>gi|296133054|ref|YP_003640301.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola sp. JR]
 gi|296031632|gb|ADG82400.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola potens
           JR]
          Length = 467

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/467 (46%), Positives = 318/467 (68%), Gaps = 37/467 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV ELD++I+GQ  AKR+VA+ALRNR+RR++LP +LRDE++PKNI+++GPTGVG
Sbjct: 3   DLTPKQIVEELDKFIVGQHKAKRSVAVALRNRYRRKKLPPELRDEVVPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ +  EV E+
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKQEKMAEVEEK 122

Query: 126 ASINAEERILD-----------------ALVGK-----------------TATSNTREVF 151
           A + AE+RILD                 AL G                        R++ 
Sbjct: 123 ARVMAEKRILDILAPLPEREMGLKNPFEALFGGGQRNDDQAQEQAFTERVNQVQRERDIL 182

Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL+ GE+  + I+IEV DT+   +  F   G   +GI N+ ++   ++   RKKK + 
Sbjct: 183 WEKLQKGELEHEYIEIEVEDTNVPTVEVFSGAGVEEMGI-NIQDILGGIL-PKRKKKRKT 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L   E+ +LIDMD V   +I+  E  GI+FLDE DKI ARD G G  VSR G
Sbjct: 241 TVEEARKILTNQEAQKLIDMDEVISQAIERAEQSGIIFLDEIDKIAARDGGAGPDVSRGG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL 
Sbjct: 301 VQRDILPIVEGSTVMTKYGAVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ IL   ++ +I QYK L++TEGI+L FTE+S+D +A +A  +N    +IGARRL 
Sbjct: 361 EEDFKQILIAPQNAIIKQYKALLETEGIMLKFTENSLDEIAKIAYTVNEQTENIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LEDI++ A D  +K VVID +YV+  + +     D+  +IL
Sbjct: 421 TILEKLLEDIAYEAPDTDQKVVVIDEKYVQEKLSEVIHNRDLSRYIL 467


>gi|149925902|ref|ZP_01914165.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
 gi|149825190|gb|EDM84401.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
          Length = 443

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/444 (50%), Positives = 303/444 (68%), Gaps = 15/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P  IV EL++ I+GQ  AKRAVA+ALRNRWRR Q+P  LR E+ PKNIL++GPTGVG
Sbjct: 3   QLTPSNIVEELNKNIVGQDAAKRAVAVALRNRWRRMQVPMPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+  VRE  +  V E+
Sbjct: 63  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLIEIALKQVREEAQLGVVEE 122

Query: 126 ASINAEERILDALV------GKTATS------NTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   A +R+LDAL+      G T  +       TR  FR+KL  GE+ DKEI+IEVA  S
Sbjct: 123 AKSAAFDRVLDALLPPARDFGFTEKAPEPDENRTRIRFREKLFAGELDDKEIEIEVAAAS 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F  + G G+KK  +M V +    +  +E+ + ++ + V
Sbjct: 183 PSLDVVGPPGMEEL-TGQLQSMFQNISG-GKKKLRKMKVAEALKAIQDEEAAKRVNEEEV 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VE  GIVFLDE DKI  +  G G  VSR+GVQRDLLPLVEG++V+TKYG I T
Sbjct: 241 RAKAIARVEQDGIVFLDEIDKIATKADGRGTDVSRQGVQRDLLPLVEGTTVNTKYGMIKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF+ ILT T++ L  QYK L+
Sbjct: 301 DHILFVASGAFHLSRPSDLIPELQGRFPIRVELESLTVDDFKRILTSTDACLTEQYKALL 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ L+FT++ +  LA++A  +N    +IGARRL TVMER+LE+++F A D Q + V 
Sbjct: 361 ATDGVELEFTDEGVRRLAEIAFTVNEKTENIGARRLYTVMERLLEEVAFEA-DGQPRPVK 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I AE+V   +G+     D+  FIL
Sbjct: 420 ITAEFVDSRLGEAAKSEDLAQFIL 443


>gi|291286265|ref|YP_003503081.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883425|gb|ADD67125.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 439

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/438 (48%), Positives = 317/438 (72%), Gaps = 9/438 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++P++IV ELD+Y++GQ++AK+AVA+A+RNR+RR QLP  L+DE+ PKNI+L+GPTGVGK
Sbjct: 4   YTPKKIVDELDKYVVGQKNAKKAVAVAMRNRYRRLQLPKSLQDEISPKNIILIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++RRLA+L+ +PFIKVE +K+TE+GYVGR+VE ++RDLV++++++VRE ++  V ++A
Sbjct: 64  TEVARRLAKLSRSPFIKVEASKYTEVGYVGRDVESMVRDLVEISVSLVREEKKASVIDKA 123

Query: 127 SINAEERILDALVGKTAT-----SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            IN +ER+LD L+  T       S TRE  R KL  GE+ ++ +++EV D+   +  F  
Sbjct: 124 KINTKERLLDLLLPPTTGYAEQDSGTREKLRVKLEAGELDERTVEVEVDDSPPQVEVFTN 183

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            G   +G   LS++  K M   +K+K +M + +  P L + E++RLIDMD V   + + V
Sbjct: 184 MGIEDMG-SGLSDMM-KNMFPSKKRKRKMKISEAKPILEQQETNRLIDMDDVKDIATERV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           E  GI+FLDE DKI   +S    G  VSREGVQRDLLP+VEGS+V+TKYG + TDHILFI
Sbjct: 242 EQSGIIFLDEIDKICVSNSSGTKGGDVSREGVQRDLLPIVEGSTVNTKYGMVRTDHILFI 301

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           A+GAFH+++P DL+PE+QGRFP+RV L+SL   +F  IL + E++L  QY  L+  +G+ 
Sbjct: 302 AAGAFHIAKPTDLIPELQGRFPIRVELESLTAEEFVRILKEPENSLTRQYTALLGADGVE 361

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FT+D I  +A++A  LN T+ +IGARRL T++E++LE++S+ A +++ K VV+DA YV
Sbjct: 362 LSFTDDGICRIAEMADELNKTLENIGARRLHTIVEKLLEEVSYEAPEVESKGVVVDAAYV 421

Query: 420 RLHIGDFPSETDMYHFIL 437
             H+ D   + D+  ++L
Sbjct: 422 DEHLKDIVEDRDLSRYVL 439


>gi|288942671|ref|YP_003444911.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium
           vinosum DSM 180]
 gi|288898043|gb|ADC63879.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium
           vinosum DSM 180]
          Length = 442

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 308/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV+ELD++I+GQ DAKRAVAIALRNRWRR Q+   +R E+ PKNIL++GPTGVGK
Sbjct: 4   ITPQRIVAELDKHIVGQSDAKRAVAIALRNRWRRAQIEEPMRSEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDL D+ + + RE    ++ + A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLADIGVKMAREQEMAKLADLA 123

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+            T +S TRE  R KLR G++ D+EI+I+V+     +
Sbjct: 124 EAAAEERILDVLLPPPSDFEEDSRSTVSSATREKLRTKLRSGDMDDREIEIQVSAAPLGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G  R K+ ++ ++     L  +E+ + ++ + +   
Sbjct: 184 EIMAPPGMEEMSN-QLQGLFQN-LGQSRTKRRKLRIRDARKLLKDEEAAKRVNDEEMKLR 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +++ VE  GIVF+DE DK+  R+  +G+ VSREGVQRDLLPLVEGS+VSTK+G++ TDHI
Sbjct: 242 ALENVEQNGIVFIDEIDKVAKREGTSGVDVSREGVQRDLLPLVEGSTVSTKHGAVRTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+ +++L  QYK L+ TE
Sbjct: 302 LFIASGAFHLSKPSDLIPELQGRLPIRVELKALSTDDFVRILTEPDASLTDQYKALLATE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+FTED I  +A++A  +N    +IGARRL TV+ER+LED+S++A++L   TV I+A
Sbjct: 362 GVNLEFTEDGIRRIAEIAWQVNEKTENIGARRLHTVLERLLEDVSYNATELDRVTVTINA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  ++ D  ++ D+  +IL
Sbjct: 422 AYVDQNMADLAADEDLSRYIL 442


>gi|209521635|ref|ZP_03270330.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           H160]
 gi|209497937|gb|EDZ98097.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           H160]
          Length = 448

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/448 (47%), Positives = 312/448 (69%), Gaps = 18/448 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122

Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169
           A   AE+RILD L+        G +++        S TR+ FRK+LR+G++ DKEI+++V
Sbjct: 123 AGDLAEDRILDILLPTARPVGFGSSSSLADTADEGSTTRQTFRKRLREGQLDDKEIELDV 182

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +     PG   +    +  +F+ + G G+K + +M V++    L  +E+ ++++
Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY
Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   
Sbjct: 361 QALLATEDVHLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + V IDA YV   + +   + D+  ++L
Sbjct: 421 RAVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|157363639|ref|YP_001470406.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           lettingae TMO]
 gi|167017230|sp|A8F5A8|HSLU_THELT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157314243|gb|ABV33342.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga lettingae
           TMO]
          Length = 462

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/458 (47%), Positives = 319/458 (69%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV ELD+YIIGQ  AK+AVAIA+RNR RRQ+LP   + E++PKNIL++GPTGVG
Sbjct: 6   NLTPKEIVRELDKYIIGQYQAKKAVAIAIRNRIRRQKLPDIWQKEVLPKNILMIGPTGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ ++RDLV++++N+V++ R ++V+++
Sbjct: 66  KTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMVRDLVEISVNMVKKERMEQVKDK 125

Query: 126 ASINAEERILDALVGKT--------------------------ATSNTREVFRKKLRDGE 159
           A    EERILDAL+ ++                          +    RE  R+KLR+GE
Sbjct: 126 AEQMVEERILDALIPESRKPQNISFMGLFTASQQQQPSPEERRSLRQKREEIRQKLRNGE 185

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + ++ I+IE+    S        G      ++L  +   +M   R+KK RM+V +    L
Sbjct: 186 LENEMIEIEIEKEISPFIGALGQGELEDLGIDLGSMLGSLMPKTRQKK-RMTVSEARRTL 244

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
           +  ES++LIDMD   +++++  +N GI+F+DE DKI  + SG+G  VSR+GVQRDLLP+V
Sbjct: 245 LPIESEKLIDMDKATQEALERAQNRGIIFIDELDKIAVKSSGSGPDVSRQGVQRDLLPIV 304

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG+++ TKYG + TD+ILFI SGAFH+SRP+DL+PE+QGRFP+RV L SL + DF  IL 
Sbjct: 305 EGTTIMTKYGPVRTDYILFIGSGAFHMSRPSDLIPELQGRFPIRVELSSLTRKDFVRILV 364

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + E+ +  QY+ L+ TEGI L FTED I+ +A +A  LN  + +IGARRL TV+E+VLE+
Sbjct: 365 EPENAITKQYQALLSTEGIELIFTEDGIEEMAKIAYELNQRLENIGARRLYTVVEKVLEE 424

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ISF A D+QEK ++IDA+YV   + +  S+ D+  +IL
Sbjct: 425 ISFEAPDVQEKKIIIDAKYVMGKLENIISDEDVSSYIL 462


>gi|313895584|ref|ZP_07829140.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975710|gb|EFR41169.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 464

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/457 (48%), Positives = 309/457 (67%), Gaps = 29/457 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL  D+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR  + +EV+E+A+
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129

Query: 128 INAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEISD 162
            NAEER++D  V     S                           R+  RK+L  GE+ D
Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEKPAEEKQEPPKYQAGRDWVRKRLHAGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + I+I+V ++S  ++     G +  G+  NL  +   ++   R+++     Q        
Sbjct: 190 EMIEIDVEESSRPMAGM-FAGSSLEGVGDNLQSMIGSLVPKRRRRRKVSVRQ-ARKLFTA 247

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280
           +E+D+L+DMD V  +++   E  GIVFLDE DKI V     +G  VSREGVQRD+LP+VE
Sbjct: 248 EEADKLVDMDVVADEAVYAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVE 307

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+
Sbjct: 308 GSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTE 367

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ LI QY  L+  EG+ L F +D+I  LA++A  +N    DIGARRL T++E++LE++
Sbjct: 368 PKNALIKQYAALLGAEGVTLTFGDDAIGRLAELAETVNEQTEDIGARRLYTLLEKLLENL 427

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL EK +VID  YV  ++ D   + DM  FIL
Sbjct: 428 SFDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464


>gi|119943797|ref|YP_941477.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii
           37]
 gi|166221598|sp|A1SQW3|HSLU_PSYIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119862401|gb|ABM01878.1| heat shock protein HslVU, ATPase subunit HslU [Psychromonas
           ingrahamii 37]
          Length = 444

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/443 (49%), Positives = 304/443 (68%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EI  ELDR+IIGQ +AKRAVAIALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKEIKHELDRHIIGQDNAKRAVAIALRNRWRRMQLDKEMRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE I+RDLVDVAI + RE    +V  +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIVRDLVDVAIKLTREEEMAKVAHK 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+            KT  S TR+ FRKKLR+G++ DKE++I++     
Sbjct: 123 AEDLAEDRILDILIPPAKTGNDWETVKTEDSATRQSFRKKLREGKLDDKEVEIDLPAPQI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  + KK +M +++    L+  E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQSMSGKDKTKKRKMKIKEALKVLIESEAAKLVNEEDIK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++   EN GI+F+DE DKI  R    G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EKALFSAENNGIIFIDEIDKICKRGDSAGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           H+LFIASGAF V++P+DL+PE+QGR P+RV L++L + D   ILT+ +++L  QYK L+ 
Sbjct: 302 HMLFIASGAFQVAKPSDLIPELQGRLPIRVELEALTEEDLAKILTEPKASLSEQYKALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEGI L F++D ID +A  A ++N T  +IGARRL T+MER+L+++S+ AS+ + +++ I
Sbjct: 362 TEGITLQFSKDGIDKIAKSAWHVNETTENIGARRLHTLMERILDELSYEASERKGESITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  +IL
Sbjct: 422 DENYVANTLDDLLENEDLSRYIL 444


>gi|34495857|ref|NP_900072.1| ATP-dependent protease ATP-binding subunit HslU [Chromobacterium
           violaceum ATCC 12472]
 gi|62286852|sp|Q7P112|HSLU_CHRVO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|34101712|gb|AAQ58080.1| heat shock protein hslU [Chromobacterium violaceum ATCC 12472]
          Length = 448

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/451 (49%), Positives = 302/451 (66%), Gaps = 24/451 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPQEIVHELDQHIIGQHKAKRAVAIALRNRWRRQQVAEPLRSEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+V+ IIRDLVDVAI   RE+     R +
Sbjct: 63  KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVDTIIRDLVDVAIKDTREAAIKRNRTR 122

Query: 126 ASINAEERILDALVG------------------KTATSNTREVFRKKLRDGEISDKEIDI 167
           A   AEERILD L+                   K     TR+ FRK LR+G+  DKEI++
Sbjct: 123 AEDAAEERILDVLLPQPRKQPSGFFAEEPAVEEKHEDGATRQKFRKMLREGKFDDKEIEL 182

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+A  ++ + N   P G       L  +F   +G+G+K+  +M V   + +L+ +E+ +L
Sbjct: 183 EIAAPAAQM-NVMAPPGMEDFASQLQGMFQG-LGAGKKQTAKMKVADAFKQLIDEEAAKL 240

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVST 286
           ++ + +  ++++ VE  GIVF+DE DK+ +R  G+ G  VSR GVQRDLLPLVEG++VST
Sbjct: 241 VNEEELKAEALKNVEQNGIVFIDEIDKVTSRGEGHSGADVSRAGVQRDLLPLVEGTTVST 300

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG + TDHILFIASGAF +S+P+DL+PE+QGR P+RV L SL+  DF+ ILT T + L 
Sbjct: 301 KYGMVKTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELSSLSVDDFKAILTSTNACLT 360

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ L F +  I  LA++A  +N    +IGARRL TVME++LE+++F   D
Sbjct: 361 RQYQALLATEGVELAFEDSGIQRLAEIAWQVNEKTENIGARRLYTVMEKLLEEVAF---D 417

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +     ID  YV   +G+     D+  ++L
Sbjct: 418 AKSGACRIDGAYVDGKLGEVAEREDLARYVL 448


>gi|254281791|ref|ZP_04956759.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR51-B]
 gi|219677994|gb|EED34343.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR51-B]
          Length = 433

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/436 (51%), Positives = 315/436 (72%), Gaps = 8/436 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQ DAKRAVAIALRNRWRRQQL  +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELDKHIVGQSDAKRAVAIALRNRWRRQQLDDELRAEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VE ++RDL + AI + RE   ++V+ +A
Sbjct: 61  TEIARRLARLAAAPFVKVEATKFTEVGYVGRDVESMVRDLAETAIKMHREQAMEKVQYRA 120

Query: 127 SINAEERILDALVGKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              AEER+LD L+      + ++TR++ RKKLR+G++ D+E++IE+    + +     PG
Sbjct: 121 EEAAEERLLDLLLPPDRDDSNTSTRQILRKKLREGDLDDREVEIEITHQGASVDIMAPPG 180

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
              +    L  LFS +  SG+ +  R+ V++    L+ +E+ +LI+ D +  ++++  E 
Sbjct: 181 MEEM-TEQLQGLFSNLRPSGKSR--RLPVKEALKALVEEEAAKLINHDDLKAEALEAAEQ 237

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GI+F+DE DK+  R    G  VSREGVQRDLLPL+EG SVSTK+G+I TDHILFIASGA
Sbjct: 238 NGIIFIDELDKVAKRGEVGGADVSREGVQRDLLPLIEGCSVSTKHGTIKTDHILFIASGA 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+S+P+DL+PE+QGR P+RV L++L  ++F+ ILT+  S+L  Q + LM TEG+ L+FT
Sbjct: 298 FHLSKPSDLIPELQGRLPIRVELEALGSAEFQRILTEPRSSLTEQNRALMATEGVELEFT 357

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
           ED I  LA++A  +N    +IGARRL TVMER+LE++SF+A+D  L+++ VVIDA++V  
Sbjct: 358 EDGIRRLAEIAWQVNEQAENIGARRLHTVMERLLEEVSFTAADAGLEQRQVVIDADFVDE 417

Query: 422 HIGDFPSETDMYHFIL 437
            +       D+  FIL
Sbjct: 418 RLASLAQNEDLSRFIL 433


>gi|332976816|gb|EGK13644.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desmospora sp.
           8437]
          Length = 474

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/468 (47%), Positives = 312/468 (66%), Gaps = 34/468 (7%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K +  ++PREIV+ELD+YI+GQ +AKRAVA+ALRNR+RR  LP DL+DE++PKNIL++GP
Sbjct: 9   KQSKQWTPREIVAELDKYIVGQNEAKRAVAVALRNRYRRTLLPEDLKDEVVPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+  + +E
Sbjct: 69  TGVGKTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAEKLEE 128

Query: 122 VREQASINAEERILDALV----GKTATSNTREVF-------RKKLRDGEISDKEID---- 166
           V+E+A   A+ERI+  LV    G     N  E+        R   R+ E  ++E++    
Sbjct: 129 VKEKAEELADERIISLLVPSGKGNNQFKNPLEMLFNSGKGERNTDREEENRNQELEQKRR 188

Query: 167 --------------IEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIR 209
                         +   +    +   D+  G+SV   GI N+ E+  + M    KK+ R
Sbjct: 189 QLRFQLKSGSLEDEVIEIEVEDQLPMMDMFAGSSVEQMGI-NMQEMLGQFMPKKTKKR-R 246

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + +++    L+++E  +LIDMD V +DS+  VE  GI+F+DE DKI  +D   G  VSRE
Sbjct: 247 LPIREARKVLIQEEGQKLIDMDQVQQDSLNRVEQTGIIFIDEVDKIAGKDRQGGPDVSRE 306

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+D++PE+QGRFP+RV L  L
Sbjct: 307 GVQRDILPIVEGSTVITKYGPVKTDHILFIAAGAFHTAKPSDMIPELQGRFPIRVELADL 366

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
              DF  ILT+ +  L+ QY  L++TEGI + FTED+I  +A +A ++N    +IGARRL
Sbjct: 367 TAEDFVRILTEPKGALLKQYTALLETEGIQVTFTEDAIREIAKLAADVNRGTENIGARRL 426

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++ER+LE++SF A D+  + V +  EYV+  +GD     D+  +IL
Sbjct: 427 HTILERLLEELSFEAPDITLEEVQVTPEYVQQRLGDIAGNRDLSQYIL 474


>gi|325108994|ref|YP_004270062.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces
           brasiliensis DSM 5305]
 gi|324969262|gb|ADY60040.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces
           brasiliensis DSM 5305]
          Length = 459

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 315/454 (69%), Gaps = 26/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           TF  +PREIV+ LD++I+GQ DAKRAVAIALRNR+R +QL   +R E+ PKNI+++GPTG
Sbjct: 12  TFRSTPREIVAALDKHIVGQADAKRAVAIALRNRYRWRQLDESVRQEITPKNIIMMGPTG 71

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA L GAPFIKVE TK+TE+GY GR+VE +IRDLV+ AI +VR+ +R+EVR
Sbjct: 72  VGKTEITRRLAALTGAPFIKVEATKYTEVGYYGRDVESMIRDLVEAAITLVRDKKREEVR 131

Query: 124 EQASINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIE 168
           ++A    E+RILD L+     S                 RE FR+ LR G++ ++E++++
Sbjct: 132 DKAEERVEDRILDLLLPAQPASWSPDVKAEDTENRHSRNREKFREMLRKGQLEEREVELK 191

Query: 169 VADTSSDISNFDIPGGASVGI----LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           V    S +  F     ++VG+    +++  +F K M    +++ ++ + +    L+  ES
Sbjct: 192 VEQKGSSMPMF-----SNVGMEQMEMDVQNMFEKFMPKKTQQR-KVPISEARKILLDQES 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSS 283
           + L+D D +  ++I++ ++ GIVF+DE DKI     G+    VSR+GVQRDLLP+VEG++
Sbjct: 246 EALLDKDAIQDEAIRLAQDSGIVFIDEIDKICGPQEGSKSADVSRQGVQRDLLPIVEGTT 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V TKYGS+ T+++LFIA+GAFH SRP+DL+PE+QGRFP+RV L  L + DF  ILT+ ++
Sbjct: 306 VQTKYGSVKTEYMLFIAAGAFHRSRPSDLMPELQGRFPIRVELIDLTRDDFVRILTEPKT 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L  QYK+L+  +G+ ++FT+D I+ALAD+A ++N +  +IGARRL T++ER+LEDISFS
Sbjct: 366 SLTEQYKQLLAIDGVTIEFTQDGIEALADIAFHVNQSTQNIGARRLHTILERLLEDISFS 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A      T+ +D +YVR  + +   + D+  FIL
Sbjct: 426 APADDLMTLTVDGKYVRHQLQEIAHDEDLSKFIL 459


>gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072310|gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock
           protein [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/450 (48%), Positives = 312/450 (69%), Gaps = 19/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIVSELD++++GQ  AKRAV+IALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I   RE    +VR 
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 120

Query: 125 QASINAEERILDALVG-----------------KTATSNTREVFRKKLRDGEISDKEIDI 167
           +A   AE+RILD L+                  K   + TR+ FRK+LR+G + D+EI++
Sbjct: 121 RAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDDKNTTRQTFRKRLREGALDDREIEL 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+A+ +  +     PG   +    +  +FS  +G+ RKK  ++ +++    L+ +E+ +L
Sbjct: 181 ELAEAAPSMEIMAPPGMEEM-TEQIKSMFSG-LGNQRKKARKIKIKEAMKLLIEEEAAKL 238

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ++ + + + +I  VE  GIVFLDE DKI  R       VSR GVQRDLLPLVEG++V+TK
Sbjct: 239 VNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  
Sbjct: 299 YGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ L+F +  I  LA+++ ++N    +IGARRL TVME++LE+ISF+A + 
Sbjct: 359 QYEALLATEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTAGEA 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + ++IDA+YV   +G+   + D+  ++L
Sbjct: 419 GVEGLLIDADYVNERLGELAVDEDLSRYVL 448


>gi|289207301|ref|YP_003459367.1| heat shock protein HslVU, ATPase HslU [Thioalkalivibrio sp. K90mix]
 gi|288942932|gb|ADC70631.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           K90mix]
          Length = 444

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/445 (48%), Positives = 305/445 (68%), Gaps = 16/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELDRYIIGQ +AKR+VA+ALRNRWRR+QLP +L+ E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVQELDRYIIGQDEAKRSVAVALRNRWRRRQLPPELQPEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL + A+  +R+    E R +
Sbjct: 63  KTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLAEAAVKQLRDEAIKENRVK 122

Query: 126 ASINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+ +             + S TR+  RK+LR+G++ ++EIDIEV    
Sbjct: 123 AEDAAEERILDALLPRPRNAGFTESAQDDSNSETRQKLRKRLREGDLDEREIDIEVQQNP 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +G  + +  R+ + +    L+ +E+ RLI+ + +
Sbjct: 183 HGVEIMTPPGMEEMAS-QLQSMFQN-LGGQKTRSRRLQIAEARKLLIEEEAARLINDEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
              +I+ VE  GIVFLDE DK+    D G+   VSREGVQRDLLPL+EG++VSTK G + 
Sbjct: 241 KERAIERVEQSGIVFLDEIDKVAKGSDKGSSGEVSREGVQRDLLPLIEGTTVSTKLGMVR 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+   F  ILT+  ++L  QY EL
Sbjct: 301 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELDALSADAFVRILTEPTASLTEQYVEL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTEG+ L F ED +  LA++A ++N+   +IGARRL TV+ER+L+D+++ A D+ +  V
Sbjct: 361 MKTEGVELRFEEDGVRRLAEIAFDVNARTENIGARRLHTVLERLLQDVAYRAPDV-DGAV 419

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           ++D  +V   + D     D+  +IL
Sbjct: 420 IVDRAFVDERLADLVENEDLSRYIL 444


>gi|212702929|ref|ZP_03311057.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098]
 gi|212673517|gb|EEB34000.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/436 (48%), Positives = 308/436 (70%), Gaps = 6/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ LP +LRDE+ PKNI+++GPTGVG
Sbjct: 3   TLTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLPEELRDEVAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE     VR  
Sbjct: 63  KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRAA 122

Query: 126 ASINAEERILDALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDI 181
           A   AE R+LD L+  +     ++TRE  R++ R G + D+E+++EV +  +  +  F I
Sbjct: 123 AEAAAESRLLDLLLPNSFGGDRNDTREKLRQQFRLGFMDDREVEVEVTEQPAQGVDMFAI 182

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           PG   +G   + ++FSK     R ++ +M V++ Y  L+++ES +L+D + +   + + V
Sbjct: 183 PGMEQMGN-QVRDMFSKAFPPRRSRR-KMKVREAYNVLIQEESGKLVDQEALVDKARERV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GI+F+DE DKI +        +SREGVQRDLLP+VEGS+V+TKYG + TDHILFIA+
Sbjct: 241 EQMGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSAVNTKYGMVRTDHILFIAA 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH S+P+D++PE+QGRFP+RV L +L K +F  ILT+  + L  QY  L+ TE I L 
Sbjct: 301 GAFHFSKPSDMIPELQGRFPLRVELNALGKDEFLRILTEPHNALTRQYAALLGTEQIRLQ 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F+ED I+ +A  A  +N+T  +IGARRL T+ME++L DISF A D+    +V++  YV+ 
Sbjct: 361 FSEDGIEEIAAFAEEINATSENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRAYVQE 420

Query: 422 HIGDFPSETDMYHFIL 437
           H+ D   + D+  +IL
Sbjct: 421 HLRDVREDQDLSQYIL 436


>gi|209696145|ref|YP_002264075.1| ATP-dependent protease ATP-binding subunit HslU [Aliivibrio
           salmonicida LFI1238]
 gi|238065793|sp|B6EML9|HSLU_ALISL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|208010098|emb|CAQ80423.1| ATP-dependent hsl protease ATP-binding subunit HslU (heat shock
           protein HslU) [Aliivibrio salmonicida LFI1238]
          Length = 444

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/442 (49%), Positives = 298/442 (67%), Gaps = 12/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLQPELRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMTHQQAVEKVKFRA 123

Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+       GK       S TR+ FRKKLR+G++ DKEID++VA     
Sbjct: 124 EEQAEDRILDILLPPARDAWGKNEEGDNDSGTRQSFRKKLREGKLDDKEIDVDVAAPQVG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    KK +M ++     L  +E  +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGETTKKRKMKIKDALKALAEEEGAKLVNPEELKE 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN+GIVF+DE DKI    +     VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSQSGDVSREGVQRDLLPLVEGSTVSTKHGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFI SGAF +++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QY  L+ T
Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+    ++ +D
Sbjct: 363 ENVNIEFTEDGISRIAESAFRVNETTENIGARRLHTVMERLMEEISYDASEKGGDSLTVD 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +G+     D+  FIL
Sbjct: 423 DAYVTSRLGELIENEDLSRFIL 444


>gi|303326952|ref|ZP_07357394.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302862940|gb|EFL85872.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 437

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 307/437 (70%), Gaps = 7/437 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ L  +LRDE+ PKNI+++GPTGVG
Sbjct: 3   TLTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLSPELRDEVAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE     VR+ 
Sbjct: 63  KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRKA 122

Query: 126 ASINAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFD 180
           A   AE R++D L+    G+   ++TR+   ++ R G +  +E+++EV +     +  F 
Sbjct: 123 AEAAAESRLMDLLLPNSFGQEERNSTRDKLLQQFRLGFLDQREVEMEVTEQGGQGVDIFA 182

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           IPG   +G   + ++FSK     R ++ +M ++  +  L+++ES +L+D + +   + + 
Sbjct: 183 IPGMEQMG-GQVKDMFSKAFPPRRSRR-KMKIRDAFNVLVQEESGKLVDQEALTERAKER 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GI+F+DE DKI +    +   +SREGVQRDLLP+VEGSSV+TKYG + TDHILFIA
Sbjct: 241 VEQSGIIFIDEIDKIASSSQNSTSDISREGVQRDLLPIVEGSSVNTKYGMVRTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAFH S+P+D++PE+QGRFP+RV L++L K +F  ILT+ ++ L  QY+ L+ TE I L
Sbjct: 301 AGAFHFSKPSDMIPELQGRFPLRVELQALGKEEFLRILTEPDNALTKQYEALLGTEQIRL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT D ++ +A  A + NS   +IGARRL T+ME++L DISF A D+    +V++ +YV 
Sbjct: 361 SFTRDGLEEVAAFAEDTNSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRDYVC 420

Query: 421 LHIGDFPSETDMYHFIL 437
            H+ D   + D+  +IL
Sbjct: 421 EHLQDVRKDQDLSQYIL 437


>gi|331092892|ref|ZP_04586548.2| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020939|gb|EGI00996.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 396

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/400 (52%), Positives = 287/400 (71%), Gaps = 16/400 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV ELDR+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELDRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI++E+ +  
Sbjct: 121 RAEDAAEDRILDALLPPARAGFNEDQAQSNDSNTRQLFRKRLREGQLDDKEIELEINEAV 180

Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             DIS    P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + 
Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNEEE 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T+
Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTL 396


>gi|225025700|ref|ZP_03714892.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC
           23834]
 gi|224941481|gb|EEG22690.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC
           23834]
          Length = 445

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/444 (48%), Positives = 304/444 (68%), Gaps = 17/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQQ AK+AVA+ALRNR+RR Q+   L+ E++PKNIL++GPTGVGK
Sbjct: 6   MTPQEIVHELDKHIIGQQQAKKAVAVALRNRYRRSQVAEPLQSEIVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+  +RE    + R++A
Sbjct: 66  TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLMEIALKNLREQAVRKNRDRA 125

Query: 127 SINAEERILDALV---------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173
              AE R+LDAL+         G+ A     S+TR+ FR+ LR GE+ DKEI+IE++  S
Sbjct: 126 QDAAENRVLDALLPPPPQTGFEGEPAEPQPESHTRKKFREMLRRGELDDKEINIELSQAS 185

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                   P G       L ++F+  +  GR K  ++ V      L+ +E+ +LI+ + +
Sbjct: 186 PASMQVMGPPGMEEFSSQLQDMFAN-LSKGRTKPHKIKVAAAMKLLLDEEAAKLINEEEL 244

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              ++  VE +GIVFLDE DKI A  + +G  VSR+GVQRDLLPLVEG++V TKYG I T
Sbjct: 245 REQAVHAVEQHGIVFLDEIDKIAADSNRHGGDVSRQGVQRDLLPLVEGTTVQTKYGMIKT 304

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL   DF+ ILT T+++L  QY+ L+
Sbjct: 305 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELSSLTVEDFQAILTSTDASLTKQYQALL 364

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ LDF  D I  LA++A  +N    +IGARRL TV+E++LED+SF A    +    
Sbjct: 365 ATDGVELDFAPDGITRLAEIAFQVNEKTENIGARRLHTVLEKLLEDVSFHAP---QGITQ 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I A YV   + +   + D+  ++L
Sbjct: 422 ITAAYVDERLAEVAEQEDLARYVL 445


>gi|260892478|ref|YP_003238575.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii
           KC4]
 gi|260864619|gb|ACX51725.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii
           KC4]
          Length = 463

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/464 (46%), Positives = 313/464 (67%), Gaps = 35/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+YI+GQ++AKRAVAIALRNR+RR  LP +LRDE+MPKNIL++GPTGVG
Sbjct: 3   DLTPRQIVAELDKYIVGQEEAKRAVAIALRNRYRRSLLPPELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTEIGYVGR+VE ++RDLV+ A+ +V++ +   V ++
Sbjct: 63  KTEIARRLARLVRAPFVKVEATKFTEIGYVGRDVEAMVRDLVETAVRMVKQEKMAAVEDK 122

Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155
           A   A ER+++ LV                                   +  R+V R++L
Sbjct: 123 AQELAIERLVEILVPAPAAPARNPLELLFGYSRPAEGMGAEERRAAEELAYRRQVVRERL 182

Query: 156 RDGEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ- 213
             GE+ D+ ++IEV D S+  +  F   G   +GI NL +    +    +K++     + 
Sbjct: 183 LRGELEDEYVEIEVEDRSTPFLEIFSAAGVEEMGI-NLQDFMGNLFPPRKKRRRVKVKEA 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           + Y  L + E+ +LIDM+ V  ++I+  E +GI+F+DE DKI  ++ G G  VSR GVQR
Sbjct: 242 RRY--LAQQEAAKLIDMEEVTAEAIKRAEEHGIIFIDEIDKIAGKEIGPGPDVSRAGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LK L + D
Sbjct: 300 DILPIVEGSTVPTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKPLTRED 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY+ L+ TEG+ L+FT D++ A+AD+A  +N    +IGARRL TVM
Sbjct: 360 FLQILTEPANALIRQYQALLATEGVKLEFTPDALQAVADIAYTVNEQTENIGARRLHTVM 419

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF+A +++ + +VIDA+YVR  +       D+  +IL
Sbjct: 420 EKLIEDISFAAPEMKGQEIVIDADYVRRKLEPIVKREDLSRYIL 463


>gi|94264967|ref|ZP_01288738.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
 gi|93454570|gb|EAT04848.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
          Length = 498

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/480 (47%), Positives = 317/480 (66%), Gaps = 49/480 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV  LD +IIGQ +AKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVG
Sbjct: 20  SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+
Sbjct: 80  KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139

Query: 126 ASINAEERILDALV---------GKTAT-------------------------------- 144
           A++ AEER+LD LV          KT++                                
Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199

Query: 145 ------SNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFS 197
                  +TRE FR+ LRDG++  +E++IEV    S  + +    GG      N+ ++F 
Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           K M   +  K R+ V +    L + E+++L+D + V R +I+  E  GIVFLDE DKI +
Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           +   +G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q
Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+RV L SL + +F  ILT+ ++ L+ QY  L+ TE I L+F + +I  LA +A ++
Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           NS   +IGARRL T++ER+L+++SF A DL+EK   + AEYVR  + +     D+  F+L
Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498


>gi|94268397|ref|ZP_01291165.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
 gi|93451624|gb|EAT02419.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
          Length = 498

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/480 (47%), Positives = 317/480 (66%), Gaps = 49/480 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV  LD +IIGQ +AKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVG
Sbjct: 20  SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+
Sbjct: 80  KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139

Query: 126 ASINAEERILDALV---------GKTAT-------------------------------- 144
           A++ AEER+LD LV          KT++                                
Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199

Query: 145 ------SNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFS 197
                  +TRE FR+ LRDG++  +E++IEV    S  + +    GG      N+ ++F 
Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           K M   +  K R+ V +    L + E+++L+D + V R +I+  E  GIVFLDE DKI +
Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           +   +G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q
Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+RV L SL + +F  ILT+ ++ L+ QY  L+ TE I L+F + +I  LA +A ++
Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           NS   +IGARRL T++ER+L+++SF A DL+EK   + AEYVR  + +     D+  F+L
Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498


>gi|15617169|ref|NP_240382.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219682475|ref|YP_002468859.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|11132905|sp|P57116|HSLU_BUCAI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802300|sp|B8D899|HSLU_BUCAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|25296055|pir||D84997 heat shock protein hslU [imported] - Buchnera sp. (strain APS)
 gi|10039234|dbj|BAB13268.1| heat shock protein hslU [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|90186501|gb|ABD91523.1| putative heat shock protein hslU [Acyrthosiphon pisum]
 gi|219622208|gb|ACL30364.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086301|gb|ADP66383.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086875|gb|ADP66956.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087465|gb|ADP67545.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 443

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/444 (48%), Positives = 305/444 (68%), Gaps = 17/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR--ESRRDEVRE 124
           T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R    ++++VR 
Sbjct: 64  TEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNIKKNKVRV 123

Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +  EE+ILD LV              + + T + FRKKLR+G + +KEI+I +  T+
Sbjct: 124 EEIV--EEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTT 181

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + +
Sbjct: 182 MGVEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEI 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            +++I  VE  GIVF+DE DKI  R   +G  +SREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 240 KKEAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  S P+DL+PE+QGR P++V L++L   DF  ILT+  +++  QYK LM
Sbjct: 300 DHILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALM 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEG+ ++FT++ I  +A+ A  +N ++ +IGARRL TV+E+++EDISF+ASD +  T+ 
Sbjct: 360 ETEGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIE 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I++ YV  H+    S  D+  FIL
Sbjct: 420 INSNYVEEHLDQLTSNEDLGRFIL 443


>gi|225874219|ref|YP_002755678.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792331|gb|ACO32421.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium
           capsulatum ATCC 51196]
          Length = 523

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 305/438 (69%), Gaps = 39/438 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+Y++GQ+ AKRAVAIALRNR RRQ+L  DL DE+MPKNI+++GPTGVG
Sbjct: 18  ELTPREIVGELDKYVVGQKAAKRAVAIALRNRMRRQKLTPDLADEIMPKNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE ++RDLV++AI++VRE + +EV ++
Sbjct: 78  KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESMVRDLVEIAIDMVREEKLEEVEDK 137

Query: 126 ASINAEER------------------------------ILDALVGKTATSN----TREVF 151
           A +NAEER                              I+      +AT      TRE  
Sbjct: 138 AELNAEERLLDLLLPPPATQTPAAAPAGAGETPDAHGAIILPPPAASATQESQQRTREKL 197

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209
           R++ R+G++ D+ ++++V +  +   +F+I     V  +  NL ++   + G  R KK +
Sbjct: 198 RQQFREGKLDDRMVELDVRERGA--PSFEIISNQGVEEMDINLKDVLPSIFGQ-RTKKRK 254

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M V + +  L+++E  RLIDMD V R +++ VE  GIVFLDE DKI  R+ G+G  VSRE
Sbjct: 255 MKVAEAFEYLVQEEESRLIDMDQVTRAAVERVETSGIVFLDEIDKIAGREGGHGPDVSRE 314

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEG++V+T+YG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL
Sbjct: 315 GVQRDILPIVEGTTVNTRYGMVRTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSL 374

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
              DF  ILT+ +S+L+ Q   L++TEG+ L+FT ++I  +A  A ++N T  +IGARRL
Sbjct: 375 TVEDFIRILTEPKSSLVKQSTALLETEGLKLEFTPEAIAEMAQFAFSVNETTENIGARRL 434

Query: 390 QTVMERVLEDISFSASDL 407
            T+ME+VL+DISF A DL
Sbjct: 435 HTIMEKVLDDISFLAPDL 452


>gi|21674017|ref|NP_662082.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS]
 gi|32129636|sp|Q8KD63|HSLU_CHLTE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21647165|gb|AAM72424.1| heat shock protein HslU [Chlorobium tepidum TLS]
          Length = 491

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/474 (46%), Positives = 315/474 (66%), Gaps = 43/474 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV +LD+YIIGQ+DAKR+VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 19  QLTPTQIVEQLDKYIIGQKDAKRSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ A+ +VR  + +EVRE+
Sbjct: 79  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVEQAVAMVRSEKTEEVREK 138

Query: 126 ASINAEERILDALVGKTA---------------------------------TSNTREVFR 152
           A++  EER+LD L+   +                                    +R+  R
Sbjct: 139 AALLVEERLLDILLPPVSGLEESEHVGDEEEAVVVEGDAEVVVEKNLEREINRKSRQKMR 198

Query: 153 KKLRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           ++LRDG + D++I++EV+ D    +     P G    I N+ +     M   RKK+ RM+
Sbjct: 199 ERLRDGRMEDRQIELEVSSDGQGGMMQIFGPLGQMEEIGNIMQDLMSGMPKKRKKR-RMT 257

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSR 268
           + +    L ++E  +LIDMD V +++++ VE+ GIVF+DE DKI A  +G    G  VSR
Sbjct: 258 IAEARKYLEQEEVQKLIDMDAVVKEALRKVEDSGIVFIDEIDKIAAPTTGAGGKGPDVSR 317

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEG++VSTKYG + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LKS
Sbjct: 318 EGVQRDLLPIVEGTAVSTKYGVVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELKS 377

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT   + LI QY+ ++KTE I L+FTE++I  +A  A  +N TV +IGARR
Sbjct: 378 LTEEDFFLILTQPRNALIKQYRAMLKTEQIDLEFTEEAIREIARTAAKVNETVENIGARR 437

Query: 389 LQTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++  +LE++ F   ++      ++ +VID   VR  +G   ++ D+  +IL
Sbjct: 438 LHTILTNLLEELMFGIPEMVMDGTIDRNIVIDDNQVREKLGKLVADRDLSQYIL 491


>gi|146329822|ref|YP_001210213.1| ATP-dependent protease ATP-binding subunit HslU [Dichelobacter
           nodosus VCS1703A]
 gi|166221477|sp|A5EX25|HSLU_DICNV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146233292|gb|ABQ14270.1| heat shock protein HslVU, ATPase subunit HslU [Dichelobacter
           nodosus VCS1703A]
          Length = 451

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 11/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+   LR E+ PKNIL++GPTGV
Sbjct: 10  LNMTPREIVEELDRHIIGQKHAKRAVANALRSRWRRKQVAEPLRSEITPKNILMIGPTGV 69

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ +I + +   ++ V+ 
Sbjct: 70  GKTEIARRLAKLAEAPFIKVEATKFTEVGYVGRDVDSIIRDLVETSIKLEKNRAKERVKS 129

Query: 125 QASINAEERILDALV---------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +A   A ER+LD LV         G+      R+++R+++   E++D  I+IE   + S 
Sbjct: 130 KAREAALERVLDVLVPRKKQTAWTGEEEIDPARKMYRERILREEMNDTVIEIETNQSMSA 189

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       LSE+F K  G  +K K +M++ K   +L  +E++ L+  + +  
Sbjct: 190 NVEIMTPPGMEEMSSQLSEMF-KSFGREKKTKRKMTIAKALIQLAEEEAEALVSHEEIKS 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I   E  GIVF+DE DK+  R    G  VSREGVQRDLLPLVEG ++STKYG I TDH
Sbjct: 249 AAIDNAEQNGIVFIDEIDKVARRSDVGGADVSREGVQRDLLPLVEGCTISTKYGMIKTDH 308

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGR PVRV L +L   DF+ ILT+ +++LI QY  L  T
Sbjct: 309 ILFIASGAFHLAKPSDLIPELQGRLPVRVELDALTADDFKRILTEPDASLIKQYTALFAT 368

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           E + L+FTED I+ +A++A ++N T  +IGARRL T++ER+ + +SF A+D ++   V+I
Sbjct: 369 EQLHLEFTEDGINKIAEIAYHVNKTTENIGARRLHTLIERLTDSLSFDAADRRDGDRVII 428

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+  +  D+  FIL
Sbjct: 429 DAAYVEKTLGEISNNEDLSRFIL 451


>gi|226938939|ref|YP_002794010.1| ATP-dependent protease ATP-binding subunit HslU [Laribacter
           hongkongensis HLHK9]
 gi|226713863|gb|ACO73001.1| HslU [Laribacter hongkongensis HLHK9]
          Length = 448

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/453 (50%), Positives = 312/453 (68%), Gaps = 23/453 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELD++IIGQ  AK+AVAIALRNRWRRQ +   L++E+ PKNIL++GPT
Sbjct: 1   MSAQMTPQEIVSELDKHIIGQAAAKKAVAIALRNRWRRQMVAEPLKNEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+   RE    + 
Sbjct: 61  GVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVETIIRDLADIAVKHAREQAIRDN 120

Query: 123 REQASINAEERILDALV---------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
           R +A   AE+RILDAL+                +   ++TR+ FRK LR+G + DKEIDI
Sbjct: 121 RVRAEDAAEDRILDALLPPPRQPGFSGENVPAAERHDADTRQKFRKMLREGRLDDKEIDI 180

Query: 168 EVADTSSDISNF--DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           E+A  +  +  F  ++PG   +    L  LFS  MG GRKK  +M +++    +  +E+ 
Sbjct: 181 EIAAQAPQVQMFAPNMPGMNDL-TEQLQGLFSN-MGGGRKKTQKMKIREALRVVTDEEAA 238

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSV 284
           +L++ + +   +IQ VE  GIVFLDE DK+ AR  G +G  VSR GVQRDLLPLVEG++V
Sbjct: 239 KLVNEEEIKLAAIQNVEQNGIVFLDEIDKVTARGEGMSGADVSRAGVQRDLLPLVEGTAV 298

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG I+TDHILFIASGAFH+++P+DLLPE+QGRFP+RV L +L   DF  ILT+T++ 
Sbjct: 299 STKYGMIHTDHILFIASGAFHLAKPSDLLPELQGRFPIRVELAALAVDDFVQILTNTDAC 358

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+ L+ TEG  LDFT+D I  +A++A  +N    +IGARRL TV+E++LE++SF  
Sbjct: 359 LTRQYQALLATEGTQLDFTDDGIRRMAEIAFQVNEKTENIGARRLHTVIEKLLEEVSF-- 416

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D +  ++ IDA YV   +       D+  +IL
Sbjct: 417 -DARTGSITIDAAYVDTKLEGIAQREDLARYIL 448


>gi|310641539|ref|YP_003946297.1| ATP-dependent hsl protease ATP-binding subunit hslu [Paenibacillus
           polymyxa SC2]
 gi|309246489|gb|ADO56056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa SC2]
          Length = 466

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/464 (45%), Positives = 321/464 (69%), Gaps = 34/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTGVG
Sbjct: 5   SLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+  R + V+++
Sbjct: 65  KTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKSERTENVKDK 124

Query: 126 ASINAEERILDALV-GKTATSNTREVF--------------------------RKK---- 154
           A   A ERI++ LV  + +  + R  F                          R+K    
Sbjct: 125 AEDMANERIVNILVPAEKSNKSQRNPFEMLFGNNTGTSVEEEPPQQDGTLAEKRRKAKFD 184

Query: 155 LRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L  G++ D  I+I+V DT+ ++ + F   G   +G +N+ E+F   +   R KK ++ ++
Sbjct: 185 LLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMG-MNMQEMFGSFLPK-RTKKRKLPIK 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L++DE+ +LIDMD V ++S++  E  GI+F+DE DKI ++  G+G  VSREGVQR
Sbjct: 243 EARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL   +
Sbjct: 303 DILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLDE 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ L  QY EL++TE I ++F+ ++I  +A +A ++N    +IGARRL T++
Sbjct: 363 FVSILTEPKNALTKQYTELLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A +L    ++I  EYVR  +GD     D+  +IL
Sbjct: 423 EKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466


>gi|219681920|ref|YP_002468306.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471629|ref|ZP_05635628.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254802299|sp|B8D8E2|HSLU_BUCA5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219624763|gb|ACL30918.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
          Length = 443

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/442 (47%), Positives = 301/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R    ++ + + 
Sbjct: 64  TEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNINKNKVRV 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               EE+ILD LV              + + T + FRKKLR+G + +KEI+I +  T+  
Sbjct: 124 EEIVEEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTTMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + + +
Sbjct: 184 VEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEIKK 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE  GIVF+DE DKI  R   +G  +SREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF  S P+DL+PE+QGR P++V L++L   DF  ILT+  +++  QYK LM+T
Sbjct: 302 ILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALMET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT++ I  +A+ A  +N ++ +IGARRL TV+E+++EDISF+ASD +  T+ I+
Sbjct: 362 EGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIEIN 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           + YV  H+    S  D+  FIL
Sbjct: 422 SNYVEEHLDQLTSNEDLGRFIL 443


>gi|33594014|ref|NP_881658.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis
           Tohama I]
 gi|62286864|sp|Q7VUJ9|HSLU_BORPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33564088|emb|CAE43356.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           pertussis Tohama I]
 gi|332383431|gb|AEE68278.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella
           pertussis CS]
          Length = 444

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   HMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV           +   ++ R+ FRK+LR+G+I D EI+IE+A     
Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + ID
Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV L + +     D+  ++L
Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444


>gi|229918622|ref|YP_002887268.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium
           sp. AT1b]
 gi|229470051|gb|ACQ71823.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium sp.
           AT1b]
          Length = 456

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/461 (47%), Positives = 314/461 (68%), Gaps = 39/461 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IVSELDR++IGQ+DAKRAVAIALRNR+RRQ+L ADLRDE+ PKNIL++GPTGVGK
Sbjct: 5   LTPRQIVSELDRFVIGQKDAKRAVAIALRNRYRRQKLSADLRDEVTPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E ++++V+E A
Sbjct: 65  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVEASVRLVKEEKKEDVKEPA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD------ 180
              A ER+LDAL GK   + T     + L  G+    E       +++D SN D      
Sbjct: 125 ERAATERLLDALQGKAKATPTASNPFEALFGGQTQQPE-------STTDTSNNDRVQLRR 177

Query: 181 ------------------------IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                                     G    G+ NL ++  +++   RK++ +++V++  
Sbjct: 178 LLELGELEDRVIEVELEEKQTMDLFQGQGMEGLSNLQDMLGQIVPKKRKQR-KLTVREAR 236

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           P L+ +E++ L+D++ VH ++++  E  GI+F+DE DKI A  S +  GVSREGVQRD+L
Sbjct: 237 PLLIAEEAENLLDLNEVHDEAVRRSEQMGIIFVDEIDKI-ATKSQDHAGVSREGVQRDIL 295

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF  
Sbjct: 296 PIVEGSTVVTKYGPVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNSLTEEDFVK 355

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+    LI QY  L+++E I + FT ++I+ +A +A ++N    DIGARRL T+MERV
Sbjct: 356 ILTEPSQALIKQYTALLESEEITVRFTHEAIEEIAKIATHVNRETDDIGARRLYTIMERV 415

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A+D+ + TV I   YV+  +G    + D+  +IL
Sbjct: 416 LEDLSFEAADMPQTTVEITPAYVQAKVGSIADDRDLSQYIL 456


>gi|169830788|ref|YP_001716770.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637632|gb|ACA59138.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 464

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/466 (47%), Positives = 317/466 (68%), Gaps = 35/466 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PR+IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP DLR+E+MPKNIL++GPTGV
Sbjct: 1   MELTPRQIVAELDKYIVGQEEAKRAVAVALRNRYRRARLPEDLREEVMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +VR  R +EV  
Sbjct: 61  GKTEIARRLARLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVRSERLNEVEA 120

Query: 125 QASINAEERILDALVG----KTATSNT----------------------------REVFR 152
           +A+  AEERI++ L      +T   N                             RE  R
Sbjct: 121 RAARLAEERIIELLAPFPQQETGGRNPLEMLLGTVRPDPEIDDRHKQRLRRVEFERETLR 180

Query: 153 KKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            KL  GE+ ++ ++IEV D  +S +  F   G   +GI NL+++   +    +KK+ +++
Sbjct: 181 TKLERGELENEYLEIEVEDRPTSTLELFSGQGVEEMGI-NLNDVLGHIF-PKKKKRRKVT 238

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L + E+ +L+D + V  + I+  E  GI+FLDE DKI  R++G G  VSR GV
Sbjct: 239 VAEARKILTQQEAQKLVDNEEVVTEGIRRAEESGIIFLDEIDKIAGREAGAGPDVSRGGV 298

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS+V TKYG + TDH+LFIA+GAFH+SRP+DL+PE+QGRFP+RV LK+L +
Sbjct: 299 QRDILPIIEGSTVVTKYGPVRTDHMLFIAAGAFHMSRPSDLIPELQGRFPIRVELKNLTE 358

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QY  L+ TEGI L+F++ S+  +A +A  +N    +IGARRL T
Sbjct: 359 EDFLQILTEPQNALIKQYTALLATEGIKLEFSKYSLVEIAKIAYTVNDQTENIGARRLHT 418

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+ER+LE+ISF+A D+++K VVID +YVR  + +     D+  +IL
Sbjct: 419 VLERLLEEISFAAPDIEDKHVVIDEQYVREKLSEIVRREDLSRYIL 464


>gi|33599169|ref|NP_886729.1| ATP-dependent protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
 gi|62286868|sp|Q7WQZ4|HSLU_BORBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33575215|emb|CAE30678.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
          Length = 444

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   HMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV           +   ++ R+ FRK+LR+G+I D EI+IE+A     
Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVNILSETDASLIKQYTALLGT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + ID
Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV L + +     D+  ++L
Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444


>gi|187476657|ref|YP_784680.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella avium
           197N]
 gi|123515068|sp|Q2L1D0|HSLU_BORA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115421243|emb|CAJ47748.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella avium
           197N]
          Length = 444

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/442 (49%), Positives = 300/442 (67%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD+YIIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   TMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSH 124

Query: 126 ASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILD LV     +           TR+ FRK+LR+G + D EI+I++A  +  
Sbjct: 125 AEDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +   + K  ++ V++ +  ++ +E+ + ++ D +  
Sbjct: 185 LDVMTPPGMEEMA-EQLRGMFAG-LARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRA 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++L+ QY  L+ T
Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L FTED I  LA++A ++N    +IGARRL TVME++LE++SF A     ++V ID
Sbjct: 363 EDVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVDAQLSEAASSQDLARYVL 444


>gi|313674923|ref|YP_004052919.1| heat shock protein hslvu, atpase subunit hslu [Marivirga tractuosa
           DSM 4126]
 gi|312941621|gb|ADR20811.1| heat shock protein HslVU, ATPase subunit HslU [Marivirga tractuosa
           DSM 4126]
          Length = 462

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/458 (47%), Positives = 314/458 (68%), Gaps = 29/458 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV+ELD+YIIGQ DAKR VAIALRNRWRR   P D++ E++P NIL++G TGVGK
Sbjct: 7   LTPKEIVAELDKYIIGQNDAKRNVAIALRNRWRRMNTPMDIQGEIVPNNILMIGATGVGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ ++N+V+ ++++EV+E+A
Sbjct: 67  TEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSVNLVKAAKKEEVKEKA 126

Query: 127 SINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEISDKE 164
           S   E+ ILDAL+    ++N                      TRE FR+KLR+GE+ D++
Sbjct: 127 SQAVEDIILDALIPPMKSTNQRPVSTTADNQVPDNDYELNQKTRERFREKLRNGELEDRK 186

Query: 165 IDIEVADTSSDISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           IDI V   +++       G      ++NL ++ S +M    KK+ ++++++    L+ +E
Sbjct: 187 IDINVKTPANNGMGMVGGGMMDEASMINLQDMLSNMMPKKNKKR-KVTIEEARKILIDEE 245

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG 281
             +LIDMD V  ++I+  EN G++F+DE DKI A+ SGN  G  VSREGVQRDLLP+VEG
Sbjct: 246 VSKLIDMDEVKEEAIKKAENTGMIFIDEIDKI-AKGSGNSSGGDVSREGVQRDLLPIVEG 304

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V+TKYG I+TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K+DF  IL + 
Sbjct: 305 SAVNTKYGIIHTDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELDSLTKADFLRILKEP 364

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L  QY  L+K E + L F +D+++ LA++A  +NS V +IGARRLQTVM ++L ++ 
Sbjct: 365 KNALTKQYTALLKAEEVDLQFDDDALEELAEIAYQVNSEVENIGARRLQTVMSKLLNELL 424

Query: 402 FSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F   D       VVI  + V   +     + D+  +IL
Sbjct: 425 FDIPDKIGPNAKVVITKQMVGEKLDGLVKDKDLSQYIL 462


>gi|33594894|ref|NP_882537.1| ATP-dependent protease ATP-binding subunit [Bordetella
           parapertussis 12822]
 gi|62286866|sp|Q7W216|HSLU_BORPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33564970|emb|CAE39917.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           parapertussis]
          Length = 444

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV+ELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   HMTPDEIVAELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV           +   ++ R+ FRK+LR+G+I D EI+IE+A     
Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + ID
Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV L + +     D+  ++L
Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444


>gi|325525688|gb|EGD03448.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia sp.
           TJI49]
          Length = 447

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/446 (48%), Positives = 320/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F ED I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVGLEFAEDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|121997994|ref|YP_001002781.1| ATP-dependent protease ATP-binding subunit HslU [Halorhodospira
           halophila SL1]
 gi|121589399|gb|ABM61979.1| heat shock protein HslVU, ATPase subunit HslU [Halorhodospira
           halophila SL1]
          Length = 442

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 307/440 (69%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 5   TMTPREIVQELDKHIVGQGEAKRAVAIALRNRWRRMQVDEPLRSEITPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+ +VRE   + +R +
Sbjct: 65  KTEIARRLARLARAPFIKIEATKFTEVGYVGRDVESIIRDLTDLALKLVREEAMEAMRHK 124

Query: 126 ASINAEERILDALV------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A    E+R+LD L+      G     N TRE FR+KLR+GE+ D+EI++EV  +   +  
Sbjct: 125 ADRAVEDRLLDTLLPGPSGGGPEDVENRTREKFRQKLRNGELDDREIEVEVQASGPGVDI 184

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  LF + MG  R ++ +++V +    L  +E+ +L++ + V  +++
Sbjct: 185 MAPPGMEEMSN-QLQGLF-RNMGQERTQRRKLTVAEAKRVLRDEEAAKLVNEEEVKAEAV 242

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           Q VE  GIVFLDE DK+  R   +G G VSREGVQRDLLPLVEG++VSTK+G + TDHIL
Sbjct: 243 QRVEEQGIVFLDEVDKVTKRAEQSGGGDVSREGVQRDLLPLVEGATVSTKHGMVRTDHIL 302

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFHV++P+DL+PE+QGR P+RV L +L   +F  ILT+  S+L+ QY+ LM  EG
Sbjct: 303 FIASGAFHVAKPSDLIPELQGRLPIRVELDALGTEEFVRILTEPSSSLVAQYQALMAAEG 362

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+FT+D +  +A++A  +N    +IGARRL TVMER+LE +S+ A+D   +T  +DA 
Sbjct: 363 LTLEFTDDGVRRIAEIARQVNERTENIGARRLHTVMERLLEQLSYEAADHGGQTRTVDAA 422

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+     + D+  +IL
Sbjct: 423 YVDEHLAGLAEDEDLSRYIL 442


>gi|312126814|ref|YP_003991688.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776833|gb|ADQ06319.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 465

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 318/468 (67%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 2   MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 62  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121

Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 181

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M
Sbjct: 182 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREG
Sbjct: 238 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 298 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL 
Sbjct: 358 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 417

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 418 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|78067911|ref|YP_370680.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383]
 gi|123769933|sp|Q39BY0|HSLU_BURS3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77968656|gb|ABB10036.1| Heat shock protein HslU [Burkholderia sp. 383]
          Length = 447

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 322/446 (72%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|222530144|ref|YP_002574026.1| ATP-dependent protease ATP-binding subunit HslU
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456991|gb|ACM61253.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 464

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 319/468 (68%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    ++++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKE 120

Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK I++EV DT      F++  G     + +S  F  V+GS    +KKK +M
Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVIGSLFPKKKKKKKM 236

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREG
Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL 
Sbjct: 357 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|332703813|ref|ZP_08423901.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553962|gb|EGJ51006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 464

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/451 (49%), Positives = 306/451 (67%), Gaps = 21/451 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDRYI+ Q+DAKR VAIA+RNRWRRQQL   LRDE+ PKNI+++GPTGVG
Sbjct: 16  NLTPREIVSELDRYIVSQKDAKRMVAIAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 75

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE +IR+L+D+ +++V+E     VR Q
Sbjct: 76  KTEIARRLAKLAGSPFHKVEATKFTEVGYVGRDVESMIRELMDIGVSLVKEEELARVRVQ 135

Query: 126 ASINAEER--------------ILDALVGKTATSN---TREVFRKKLRDGEISDKEIDIE 168
           A   AEE                  A  G+TA ++   TRE  R   R G++ ++E++++
Sbjct: 136 AEKRAEEALLDLLLPGPSQQGVFAAAPGGETAGADKDSTREKLRTLWRQGQLDEREVEMQ 195

Query: 169 V-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           V A T   I    IPG   +G     ++FSKV  S +KK  ++ ++  +  L+++ESD+L
Sbjct: 196 VTAKTGPQIEVMSIPGMEEMGS-QFRDMFSKVFPS-KKKTRKIKIKDAHGLLVQEESDKL 253

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVST 286
           +DMD V   + + VE  GI+F+DE DKI   D+   G  VSREGVQRDLLP+VEGS+V+T
Sbjct: 254 VDMDKVVEQAKERVEQTGILFIDEIDKICGSDARRGGPDVSREGVQRDLLPVVEGSTVNT 313

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L + +F  ILT+  + L 
Sbjct: 314 KYGMVKTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELKDLGQEEFYRILTEPANALT 373

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY  L+ TE I L F +D++  +A  A  +N    +IGARRL T+MER+L D+SF A D
Sbjct: 374 KQYSALLSTEDIELSFGDDALREIAAFAEQINQETENIGARRLYTIMERILSDLSFEAPD 433

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + V +D  YVR H+ D   + D+  +IL
Sbjct: 434 RPGQKVAVDRVYVREHLKDVQQDHDLSRYIL 464


>gi|308068648|ref|YP_003870253.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa E681]
 gi|305857927|gb|ADM69715.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa E681]
          Length = 466

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/464 (45%), Positives = 321/464 (69%), Gaps = 34/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTGVG
Sbjct: 5   SLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+  R + V+++
Sbjct: 65  KTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKTERTENVKDK 124

Query: 126 ASINAEERILDALV-GKTATSNTREVF--------------------------RKKLR-- 156
           A   A ERI+  LV  + +  + R  F                          R+K++  
Sbjct: 125 AEDMANERIVSILVPAEKSNKSQRNPFEMLFGNNTGASVEEEPPQQDGSLAEKRRKVKFD 184

Query: 157 --DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
              G++ D  I+I+V DT+ ++ + F   G   +G +N+ E+F   +   R KK ++ V+
Sbjct: 185 LLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMG-MNMQEMFGSFL-PKRTKKRKLPVK 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L++DE+ +LIDMD V ++S++  E  GI+F+DE DKI ++  G+G  VSREGVQR
Sbjct: 243 EARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL   +
Sbjct: 303 DILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLDE 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ L  QY +L++TE I ++F+ ++I  +A +A ++N    +IGARRL T++
Sbjct: 363 FVSILTEPKNALTKQYTDLLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A +L    ++I  EYVR  +GD     D+  +IL
Sbjct: 423 EKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466


>gi|74318560|ref|YP_316300.1| ATP-dependent protease ATP-binding subunit HslU [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058055|gb|AAZ98495.1| Heat shock protein HslU [Thiobacillus denitrificans ATCC 25259]
          Length = 438

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 306/441 (69%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL++ A+  +RE    +VR +A
Sbjct: 61  TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETAVKQMREQATAKVRFRA 120

Query: 127 SINAEERILDALV------GKTATSNT----REVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+      G+T    +    R+ FRK LR+G++ DKEI+IEVA  +  +
Sbjct: 121 EEGAEERILDALLPPSRGFGETEPPRSDGAARQRFRKMLREGQLDDKEIEIEVAAVTPSM 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
             F  PG   +    L  +F   +G  RK+  ++ V++    +  +E+ RLI+ +   + 
Sbjct: 181 EIFAPPGMEDLS-QQLQGMFQN-LGQSRKQMRKLKVREAVKLVTEEEATRLINDEETKQQ 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +++ VE  GIVFLDE DKI  R   +G  VSR+GVQRDLLPL+EG++VSTKYG + TDHI
Sbjct: 239 ALEAVEQNGIVFLDEIDKIATRSDAHGSDVSRQGVQRDLLPLIEGTTVSTKYGMVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT T++ L  QY+ L+ TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FTE  I  +A++A  +N    +IGARRL TVME++LEDISF A  +  +  VIDA
Sbjct: 359 GVALRFTEGGIRRIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGSVTGEH-VIDA 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           E V   +    +  D+  ++L
Sbjct: 418 EAVSSRLAALAAREDLARYVL 438


>gi|146296275|ref|YP_001180046.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166221472|sp|A4XIX0|HSLU_CALS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145409851|gb|ABP66855.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 465

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/466 (48%), Positives = 317/466 (68%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD+YI+GQ+ AKR VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVGK
Sbjct: 4   LTPQEIVRELDKYIVGQERAKRCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    ++++E+A
Sbjct: 64  TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKERA 123

Query: 127 SINAEERILDALVG-----KTATSNT--------------------------REVFRKKL 155
               E+RIL+ L+      K    N                           RE+ R+KL
Sbjct: 124 KALVEDRILEILIPEPHARKAGFKNPFEALFGAPSQEPEQTYQTTDDYIRTQREILREKL 183

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSV 212
           R GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M++
Sbjct: 184 RSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKMTI 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E ++LIDMD V +++I   E +GI+F+DE DKI  R SG G  VSREGVQ
Sbjct: 240 REAREVLEQEEYNKLIDMDEVIKEAIHRAEQHGIIFIDEIDKIAGRGSGVGPDVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + 
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELHPLTEE 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT  ++ +  QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV
Sbjct: 360 DFKKILTQPKNAITKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTV 419

Query: 393 MERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E+++EDISF  +++++   VVID +YV   + D   + D+  FI+
Sbjct: 420 VEKIMEDISFEYANVEKPIDVVIDKDYVYSKVSDMIKDKDLNRFII 465


>gi|332799168|ref|YP_004460667.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Tepidanaerobacter sp. Re1]
 gi|332696903|gb|AEE91360.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Tepidanaerobacter sp. Re1]
          Length = 465

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/467 (45%), Positives = 318/467 (68%), Gaps = 39/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++I+ EL++YI+GQ+DAK++VAIALRNR+RRQ L  +++DE++PKNIL++GPTGVG
Sbjct: 3   NLTPKKIIEELNKYIVGQEDAKKSVAIALRNRYRRQMLSDEIKDEVIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+  + + V+++
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKTEKIEAVKDK 122

Query: 126 ASINAEERILDALVG----------------------------------KTATSNTREVF 151
           A+  A ++I   L                                    KTA  N +E+ 
Sbjct: 123 AAELANQKIAAILCPIPTKTVSVNPFETIFGSSKQNYSTDNEEMYTQKVKTARENQKEIL 182

Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+++G +  + ++IE+ D   S    F   G   +GI N  ++F  +    RKKK  +
Sbjct: 183 -EKVKNGSLDKELVEIEIEDNLPSMFEIFSASGMEEIGI-NFQDMFEGLFPK-RKKKCTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +++     L ++E+ +LIDMD V  +SI+  E+ GI+F+DE DKI  ++S  G  VSREG
Sbjct: 240 TIENARRILTQEEAQKLIDMDEVINESIRKAEDSGIIFIDEIDKIAGKES-YGQDVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS+V TKYG I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL 
Sbjct: 299 VQRDILPIIEGSTVVTKYGPIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + D + ILT+ +++LI QY  L++TEGI + F+ED+ID +  VAV++N    +IGARRL 
Sbjct: 359 EEDLKKILTEPKNSLIKQYTALLETEGIKISFSEDAIDEIVKVAVHVNHESENIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ME++LEDISF+A DL +  ++ID +YV   + +   + D+  +IL
Sbjct: 419 TIMEKLLEDISFNAPDLLQSQIIIDRDYVNQKLKNIVKDKDLSMYIL 465


>gi|304436892|ref|ZP_07396856.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304370091|gb|EFM23752.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 465

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/458 (48%), Positives = 310/458 (67%), Gaps = 30/458 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
            NAEER++D  V     S                            RE  RK+LR GE+ 
Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQEDEPEEKKEEPPKYQAGREWMRKRLRSGELE 189

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +  I++EV +++  + N    G +  G+  NL  +  K++   R K+ +++V +      
Sbjct: 190 NDVIEVEVEESARPMGNM-FAGSSLEGMSDNLQSMIGKLVPKNRHKR-KVTVAQARKIFA 247

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279
            +E+D+L+DMD V  ++++  E  GIVFLDE DK+ V+     G  +SREGVQRD+LP+V
Sbjct: 248 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIV 307

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF  ILT
Sbjct: 308 EGSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILT 367

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + LI QY  L+  EG+ L F +D++  LA +A  +N    DIGARRL T++E++LE+
Sbjct: 368 EPRNALIKQYSALLGVEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEE 427

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A DL EK VVIDA YV   + D   + D+  FIL
Sbjct: 428 LSFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465


>gi|311030136|ref|ZP_07708226.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus sp.
           m3-13]
          Length = 466

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/469 (44%), Positives = 319/469 (68%), Gaps = 37/469 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PR+IV  LD+YI+GQ +AK+AVA+ALRNR+RR  L  +LRDE++PKNIL++GPT
Sbjct: 1   MSTKLTPRQIVDMLDQYIVGQTNAKKAVAVALRNRYRRSLLKGNLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +   V
Sbjct: 61  GVGKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMASV 120

Query: 123 REQASINAEERILDALV------------------GKTATSNTREVFRK----------- 153
           +E+A  NA +R+++ LV                  G T +++T E  ++           
Sbjct: 121 KEKALENANKRLVELLVPGKQKSASYKNPLEMFFGGNTNSNDTEEQEKQEEVSIKDQRRR 180

Query: 154 ---KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKI 208
              +L  GE+ D+ + +EV +     S FD+  G+ +  +  N+ +  S +M   +KKK 
Sbjct: 181 MAHQLALGELEDRYVTVEVEEQQG--SMFDMLQGSGMEQMGMNMQDALSNLMPK-KKKKR 237

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           R++V++  P L  +E+ +LIDMD V ++++   E  GI+F+DE DKI  ++SG+   VSR
Sbjct: 238 RLTVREARPVLAHEEAQKLIDMDEVTQEAVNRAEQNGIIFIDEIDKIAKKNSGSSADVSR 297

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS+V TKYG + TDH+LFI++GAFH+++P+DL+PE+QGRFP+RV L  
Sbjct: 298 EGVQRDILPIVEGSTVVTKYGQVKTDHVLFISAGAFHIAKPSDLIPELQGRFPIRVELTK 357

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+  DF  IL + ++ L+ QY  L++TEGI ++F++D+I  LA+VA  +N    +IGARR
Sbjct: 358 LSIDDFVRILVEPDNALLKQYTALLETEGIKVEFSDDAIRKLAEVAFQVNQDTDNIGARR 417

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+SF A D+  + +VI  +YV   +G+     D+  FIL
Sbjct: 418 LHTILEKLLEDLSFEAPDINLEKIVITPKYVDEKLGNIVKNKDLSQFIL 466


>gi|238926944|ref|ZP_04658704.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885178|gb|EEQ48816.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 465

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/458 (47%), Positives = 310/458 (67%), Gaps = 30/458 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
            NAEER++D  V     S                            RE  RK+LR GE+ 
Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQADEPEGKKEEPPKYQAGREWMRKRLRSGELE 189

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +  I++EV +++  + N    G +  G+  NL  +  K++   R+K+ +++V +      
Sbjct: 190 NDVIEVEVEESARPMGNM-FAGSSLEGMSDNLQSMIGKLVPKNRRKR-KVTVAQARKIFA 247

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279
            +E+D+L+DMD V  ++++  E  GIVFLDE DK+ V+     G  +SREGVQRD+LP+V
Sbjct: 248 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIV 307

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF  IL 
Sbjct: 308 EGSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILI 367

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + LI QY  L+  EG+ L F +D++  LA +A  +N    DIGARRL T++E++LE+
Sbjct: 368 EPRNALIKQYSALLGAEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEE 427

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A DL EK VVIDA YV   + D   + D+  FIL
Sbjct: 428 LSFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465


>gi|312621563|ref|YP_004023176.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202030|gb|ADQ45357.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 464

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M
Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 236

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREG
Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL 
Sbjct: 357 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|89098650|ref|ZP_01171532.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086612|gb|EAR65731.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
          Length = 468

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/471 (45%), Positives = 314/471 (66%), Gaps = 37/471 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M L+ N +PR+IV  LD+YIIGQ+DAK+AVA+ALRNR+RR  L   +RDE+ PKNIL++G
Sbjct: 1   MSLSTNLTPRQIVERLDQYIIGQKDAKKAVAVALRNRYRRGLLEEAIRDEISPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  
Sbjct: 61  PTGVGKTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMQ 120

Query: 121 EVREQASINAEERILDALV--GKTATS-----------------------------NTRE 149
            V+E+A  NA  RI+D LV  GK A S                               R+
Sbjct: 121 SVKERAEENANRRIVDMLVPSGKKAASYKNPLEMLFGGGGGQQDQENEPAEDYSLTEKRK 180

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKK 207
           + R+KL  GE+ ++ I +EV +     S FD+  G+ +    +N+ +  S +M   RKK+
Sbjct: 181 IAREKLAMGELENELITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLMPKKRKKR 238

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGV 266
            +++V++    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI ++ S G+   V
Sbjct: 239 -KLTVREARKVLSNEEAQKLIDMDEVTQEAVFRAEQSGIIFIDEIDKIASKSSGGSNADV 297

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEGS+V TKYGS+ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L
Sbjct: 298 SREGVQRDILPIVEGSTVVTKYGSVKTDHVLFMAAGAFHIAKPSDLIPELQGRFPIRVEL 357

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L   DF  IL + ++ L  QY  L++TEGI ++F++D+I  +A+VA  +N    +IGA
Sbjct: 358 TKLTVEDFYKILVEPDNALTKQYTALLETEGIQIEFSDDAIRRIAEVAYEVNQNTDNIGA 417

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++E++LED+SF A ++    V I  +YV   +G      D+  FIL
Sbjct: 418 RRLHTILEKLLEDLSFEAPEISMGKVTITPQYVEEKLGAISRNKDLSQFIL 468


>gi|189349030|ref|YP_001944658.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|189333052|dbj|BAG42122.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
          Length = 444

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/446 (48%), Positives = 321/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++   RES   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 120

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 359 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 419 VTIDAKYVDRALGEVSQDEDLSRYVL 444


>gi|161526256|ref|YP_001581268.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|221201905|ref|ZP_03574942.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2M]
 gi|221207589|ref|ZP_03580597.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2]
 gi|221215814|ref|ZP_03588773.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD1]
 gi|160343685|gb|ABX16771.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|221164350|gb|EED96837.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD1]
 gi|221172435|gb|EEE04874.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2]
 gi|221178325|gb|EEE10735.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2M]
          Length = 447

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/446 (48%), Positives = 321/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|186474840|ref|YP_001856310.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           phymatum STM815]
 gi|238691321|sp|B2JJX7|HSLU_BURP8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|184191299|gb|ACC69264.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           phymatum STM815]
          Length = 447

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/449 (48%), Positives = 311/449 (69%), Gaps = 21/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQNRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   ++R +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKMRTK 122

Query: 126 ASINAEERILDALVGKTAT---------------SNTREVFRKKLRDGEISDKEI--DIE 168
           A   AE+RILD L+    T               + TR+ FRK+LR+G + DKEI  DIE
Sbjct: 123 AEDLAEDRILDILLPGARTVGFGSGTSEASGDESNTTRQTFRKRLREGALDDKEIELDIE 182

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   + DI     P G       +  +F+  +G G+K + ++ V++    L  +E+ +++
Sbjct: 183 MQAPAMDIMG---PPGMEDMTEQIRSMFAN-LGGGKKTRRKVKVKEALKLLTDEEASKML 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + + V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKY
Sbjct: 239 NDEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKY 298

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ Q
Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQ 358

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +  
Sbjct: 359 YQALLATEDVHLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHT 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K+V+IDA YV   + D   + D+  ++L
Sbjct: 419 GKSVLIDAAYVDRALNDVAQDEDLSRYVL 447


>gi|312876490|ref|ZP_07736473.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796701|gb|EFR13047.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 465

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/466 (47%), Positives = 317/466 (68%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVGK
Sbjct: 4   LTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E+A
Sbjct: 64  TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKERA 123

Query: 127 SINAEERILD------------------ALVGKTATS-------------NTREVFRKKL 155
               E+RIL+                  AL G T+                 RE+ R+KL
Sbjct: 124 KALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILREKL 183

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSV 212
           R GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M++
Sbjct: 184 RSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKMTI 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQ
Sbjct: 240 KEAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + 
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEE 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV
Sbjct: 360 DFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTV 419

Query: 393 MERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 420 VEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|297617133|ref|YP_003702292.1| heat shock protein HslVU, ATPase HslU [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144970|gb|ADI01727.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 467

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/469 (47%), Positives = 320/469 (68%), Gaps = 41/469 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR IV ELDRYI+GQ+ AK+AVAIALRNR+RR++LPA++ +E+ PKNI+++GPTGVG
Sbjct: 3   NLTPRAIVEELDRYIVGQEAAKKAVAIALRNRYRRKKLPAEIGEEIYPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+GYVGR+V+ +IRDLV+ ++ ++++ +  EV  +
Sbjct: 63  KTEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVDSMIRDLVETSVQMIKKEKMAEVENK 122

Query: 126 ASINAEERILDA------------------LVGKTATSN----------------TREVF 151
           A   AEERI+D                   L+G+T++                   RE+ 
Sbjct: 123 ARKLAEERIVDYMLPLPKKRGSQVVNPLEFLLGRTSSETDNQDSDIGPGYEDIRRRREIL 182

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKI 208
             K+   E+ D+ I+IEV +    +S F++  GA V   GI NL ++   +    +KK+ 
Sbjct: 183 STKIARMELEDELIEIEVEEKP--VSFFEVFSGAGVEEMGI-NLQDMLGSLAPKSKKKR- 238

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           +++V +    L  +ES +LIDMD V R+++   EN GI+FLDE DKI  R++G+G  VSR
Sbjct: 239 KVTVAEARRILTNEESQKLIDMDEVQREAVYRAENSGIIFLDEIDKIAGRETGHGPDVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
            GVQRD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L S
Sbjct: 299 GGVQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHITKPSDLIPELQGRFPIRVELTS 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DFR ILT+ +++LI QY  L+ TEG+ + FT ++ID +A V+  +N++  +IGARR
Sbjct: 359 LTVEDFRRILTEPDNSLIKQYVALLSTEGVDISFTPEAIDYIAQVSYEVNASTENIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E+VLED+ F AS++  +TVVID  YV   +G    + D+  +IL
Sbjct: 419 LHTILEKVLEDLLFEASEMAGQTVVIDKAYVEARLGPIIKDEDLSRYIL 467


>gi|312792642|ref|YP_004025565.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179782|gb|ADQ39952.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 465

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 2   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 62  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121

Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILRE 181

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M
Sbjct: 182 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREG
Sbjct: 238 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 298 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL 
Sbjct: 358 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 417

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 418 TVVEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|304404239|ref|ZP_07385901.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           curdlanolyticus YK9]
 gi|304347217|gb|EFM13049.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           curdlanolyticus YK9]
          Length = 465

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 311/463 (67%), Gaps = 33/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+YIIGQ+ AKR+VAIALRNR+RR +L  +LRDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVAELDKYIIGQKQAKRSVAIALRNRYRRSRLSEELRDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+  R + V+++
Sbjct: 65  KTEIARRLAKLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAERTERVKDR 124

Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155
           A + A ERI+  LV     S T                              R+  ++KL
Sbjct: 125 AEVLANERIVALLVPSATKSKTQKNPFEMLFGGQQGKESEPEPEYDSSVSEQRKAAKEKL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI-LNLSELFSKVMGSGRKKKIRMSVQK 214
             G + ++ I+IEV D + ++ +  + G    G+  N+ +L  + M   R KK ++ +++
Sbjct: 185 AAGLLENEMIEIEVEDNTPNMMDM-LSGQPGEGMGANMQDLLGQFMPK-RTKKRKLKIKE 242

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L+++E+ +LIDMD V  +S+   E  GI+F+DE DKI +   G+G  VSREGVQRD
Sbjct: 243 ARKALIQEEATKLIDMDDVITESVLRAEQSGIIFIDEIDKIASPSRGSGPDVSREGVQRD 302

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TD++LF+A+GAFHV++P+DL+PE+QGRFP+RV L SL+  DF
Sbjct: 303 ILPIVEGSTVMTKYGPVKTDYVLFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLEDF 362

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L  QY  L++TEGI +DF++++I  LA +A ++N    +IGARRL T++E
Sbjct: 363 VKILQEPKNALTKQYSALLETEGIAIDFSDEAIRELASIAADVNKNTENIGARRLHTILE 422

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A DL  + + I  EYV+  +       D+  +IL
Sbjct: 423 KLLEDLSFEAPDLNLERITITPEYVKEKLSSIAQNRDLSQYIL 465


>gi|302872576|ref|YP_003841212.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575435|gb|ADL43226.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 464

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVKELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILD------------------ALVGKTAT-------------SNTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMDQSYQTTDDYIKTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK I++EV DT      F++  G     + +S  F  V GS    +KKK +M
Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 236

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V +++IQ  E  GI+F+DE DKI  + S  G  VSREG
Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQQGIIFIDEIDKIAGKGSSVGPDVSREG 296

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 356

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+++I+A+A VAV +N    +IGARRL 
Sbjct: 357 EEDFKKILTQPKNAIIKQYVELMKTEGVNITFTDNAIEAIAKVAVKINEQSENIGARRLH 416

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|206558901|ref|YP_002229661.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia J2315]
 gi|238693078|sp|B4E7Z1|HSLU_BURCJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|198034938|emb|CAR50810.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia J2315]
          Length = 447

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 320/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|148269541|ref|YP_001244001.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           petrophila RKU-1]
 gi|166221614|sp|A5IJQ2|HSLU_THEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|147735085|gb|ABQ46425.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           petrophila RKU-1]
          Length = 463

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTAT----------------------------SNTREVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ ++EI+IE+ +T S       PG   +GI  ++ +FS ++   +KKK +M V
Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKQKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VV+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463


>gi|193213901|ref|YP_001995100.1| ATP-dependent protease ATP-binding subunit HslU [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087378|gb|ACF12653.1| heat shock protein HslVU, ATPase subunit HslU [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/461 (47%), Positives = 311/461 (67%), Gaps = 31/461 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV ELD+YIIGQ++AK++VAIALRNR RRQ++   LRDE+MP NI+++GPTGVGK
Sbjct: 42  LTPSQIVKELDKYIIGQREAKKSVAIALRNRLRRQRVEGALRDEIMPNNIIMIGPTGVGK 101

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL+D+A+ +VR  +   V+E+A
Sbjct: 102 TEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLMDLAVGMVRSEQSVVVQEKA 161

Query: 127 SINAEERILDALV----------GKTATSNT-----------------REVFRKKLRDGE 159
              AEERILD L+           K  ++ T                 RE  R +LR+G+
Sbjct: 162 KQLAEERILDILLPPVKKIPAGFKKQQSAETDADTDEDKTENEINDRSREKMRDRLRNGK 221

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + DK I++EV+  S  +     P G    I  + +     +   RKK+ R+++ +    L
Sbjct: 222 LDDKTIELEVSSDSQGMMQILGPFGPMEDIGGMMQDIISGLPKKRKKR-RVTISEAKVIL 280

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLP 277
            ++E+ +LIDMD V +++ Q VEN GIVF+DE DKI +  +GNG    VSREGVQRDLLP
Sbjct: 281 EQEETQKLIDMDAVVKEATQRVENSGIVFIDEIDKIASSSTGNGRSPDVSREGVQRDLLP 340

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF  I
Sbjct: 341 IVEGSNVATKYGLVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLQEDDFVKI 400

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT  E+ LI QY  L+KTE + L+F ED I  +A +A  +N +V +IGARRL T+M  +L
Sbjct: 401 LTQPENALIKQYTALLKTENVELEFLEDGIQEIARIAAQVNESVENIGARRLHTIMTTLL 460

Query: 398 EDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++ F+   ++ +  +V+D   V   + D   + D+  +IL
Sbjct: 461 EELMFNIPENIPDNKIVVDKAMVESRLSDIAKDRDLSRYIL 501


>gi|224826711|ref|ZP_03699811.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum
           2002]
 gi|224600931|gb|EEG07114.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum
           2002]
          Length = 447

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/450 (48%), Positives = 301/450 (66%), Gaps = 23/450 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIV EL+++IIGQ  AKRAVAIALRNRWRRQQ+   L+ E+ PKNIL++GPTGVG
Sbjct: 3   QMTPPEIVHELNKHIIGQDAAKRAVAIALRNRWRRQQVAEPLKSEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDL ++AI   R++    +R +
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLTEIAIKDTRDAAIKRLRHR 122

Query: 126 ASINAEERILDALV------------------GKTATSNTREVFRKKLRDGEISDKEIDI 167
           A   AE+RILD L+                   K   S TR  FRK LR+G++ DKEI+I
Sbjct: 123 AEDAAEDRILDVLLPPARQPAGFFAGEEEAPASKPEDSATRLKFRKMLREGKLDDKEIEI 182

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            VA     +     PG        L  +F   +G+G++K  +++V +    ++ +E+ +L
Sbjct: 183 NVAAPQGKMEILAPPGMEDFSS-QLQTMFQG-LGAGKQKARKLNVAEALKLVIEEEAAKL 240

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ++ D + ++++Q VE  GIVF+DE DK+ +R  GNG  VSR GVQRDLLPLVEG++V+TK
Sbjct: 241 VNEDEIKQEALQNVEQNGIVFIDEIDKVASRIEGNGADVSRAGVQRDLLPLVEGTTVTTK 300

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL   DFR ILT+T++ L  
Sbjct: 301 YGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLTVDDFRQILTNTDACLTR 360

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ L F +  I  +A++A ++N    +IGARRL TV+E++LE+ISF   D 
Sbjct: 361 QYEALLATEGVELVFADSGIQRMAEIAWHVNEKTENIGARRLYTVIEKLLEEISF---DT 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +     +DA YV   +       D+  ++L
Sbjct: 418 RTGRFEVDAAYVDSKLDMLSQREDLARYVL 447


>gi|107024023|ref|YP_622350.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia AU 1054]
 gi|116691110|ref|YP_836733.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia HI2424]
 gi|170734442|ref|YP_001766389.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia MC0-3]
 gi|254246899|ref|ZP_04940220.1| Heat shock protein HslU [Burkholderia cenocepacia PC184]
 gi|122978617|sp|Q1BSM8|HSLU_BURCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221465|sp|A0KBG3|HSLU_BURCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238688620|sp|B1K0G2|HSLU_BURCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|105894212|gb|ABF77377.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia AU 1054]
 gi|116649199|gb|ABK09840.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia HI2424]
 gi|124871675|gb|EAY63391.1| Heat shock protein HslU [Burkholderia cenocepacia PC184]
 gi|169817684|gb|ACA92267.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia MC0-3]
          Length = 447

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVAQDEDLSRYVL 447


>gi|154249091|ref|YP_001409916.1| ATP-dependent protease ATP-binding subunit HslU [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153027|gb|ABS60259.1| heat shock protein HslVU, ATPase subunit HslU [Fervidobacterium
           nodosum Rt17-B1]
          Length = 458

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/453 (46%), Positives = 305/453 (67%), Gaps = 24/453 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV EL++YIIGQ  AK+AVAIA+RNR RRQ+L  + R E++PKNILL+GPTGVGK
Sbjct: 8   LTPRQIVEELNKYIIGQDKAKKAVAIAIRNRIRRQRLSEEWRKEVVPKNILLIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+++G+PF+KVE TKFTE+GYVG+NV+ +IRDLV++A+N+V++ +  EV  + 
Sbjct: 68  TEIARRLAQISGSPFLKVEATKFTEVGYVGKNVDSMIRDLVEIAVNMVKQEKIKEVEPKV 127

Query: 127 SINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEISDKE 164
               EERILDALV     S                        R   R+KL  GEI D E
Sbjct: 128 KNLVEERILDALVPVKKQSVPFANIFGFQPAQEQSDDQDVRRKRAELREKLAKGEIEDLE 187

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+I+V      I    +P    +GI + S+    ++   +KK+ RM + +    L   ES
Sbjct: 188 IEIDVEINQPGIGFIGMPDMEDMGI-DFSQFLGNLLPKQKKKR-RMKISEARRVLTPIES 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           +++IDMD V + ++ + +  GI+F+DE DKI      +G  VSR+GVQRDLLP+VEG++V
Sbjct: 246 EKIIDMDEVIQKALVLAQERGIIFIDELDKIAGGSQAHGPDVSRQGVQRDLLPIVEGTTV 305

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG + TD+ILFI +GAFH+++P DL+PE+QGRFP+RV L+ L + DF  ILT+ E+ 
Sbjct: 306 STKYGPVKTDYILFIGAGAFHMTKPTDLIPELQGRFPIRVELEPLRQEDFVRILTEPENA 365

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK L+ TEGI L+FT+D+ID ++ +A  LN  + +IGARRL TV+E++LEDI F A
Sbjct: 366 LLKQYKALLYTEGIELEFTQDAIDEISKIAYYLNEKMENIGARRLYTVVEKLLEDIMFQA 425

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++    ++ID  YV + +G+   + ++  +IL
Sbjct: 426 PEVDTNKIIIDKNYVTMKLGEIVKDENLSAYIL 458


>gi|254478871|ref|ZP_05092235.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035184|gb|EEB75894.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium
           pacificum DSM 12653]
          Length = 461

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/462 (45%), Positives = 316/462 (68%), Gaps = 26/462 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNIL+VG
Sbjct: 1   MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120

Query: 121 EVREQASINAEERILDALVGKTAT-------------------------SNTREVFRKKL 155
            V E+A   AEER++D L+GK                            S  RE  R++L
Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R GE+ +  ++IEV DT+  +       GA    + L ++FS ++   +KK  +++V + 
Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDLLPK-KKKLRKVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+  LIDMD V  ++++  EN GI+F+DE DKI +     G  VSREGVQRDL
Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF 
Sbjct: 300 LPIIEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY+EL++TEG+ + +TE++I+ +A+VA  +N    DIGARRL TVME+
Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ED+SF A +L  + +VI A+YV+  + D  ++ ++  +IL
Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461


>gi|115353190|ref|YP_775029.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           ambifaria AMMD]
 gi|122321966|sp|Q0BAX8|HSLU_BURCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115283178|gb|ABI88695.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria AMMD]
          Length = 447

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/446 (47%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRTKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDVLLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVEHALGEVSQDEDLSRYVL 447


>gi|297569001|ref|YP_003690345.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924916|gb|ADH85726.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 506

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/484 (46%), Positives = 317/484 (65%), Gaps = 54/484 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV +LD YIIGQ +AKR+VAIALRNRWRR+Q+P  LRDE+ PKNI+++GPTGVG
Sbjct: 25  SLTPREIVRQLDDYIIGQGEAKRSVAIALRNRWRRRQVPPPLRDEIAPKNIIMIGPTGVG 84

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL+++AI +VRE  R +V+E+
Sbjct: 85  KTEIARRLATLAQSPFLKVEASKFTEVGYVGRDVESMIRDLLELAIGMVREEERKKVQEK 144

Query: 126 ASINAEERILDALV---------------------------GKTATSN------------ 146
           A + AEERILD LV                           G T  S+            
Sbjct: 145 AGVMAEERILDLLVPPPPPRRPGAAGPGGTPAINLAYTPADGFTKPSHDQSAHDPSAHDP 204

Query: 147 ---------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI--PGGASVGILNLSEL 195
                    TR+ FR+ LR+G++ ++E++IEV    +    FD+   GG      NL E+
Sbjct: 205 GAATGSGESTRDKFRRMLREGKLDEREVEIEVEQQQA-TPMFDVFAAGGMEEMESNLREM 263

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
           F K M   +  K ++ V++    L + E+++LID + V R +I+  E  GI+FLDE DKI
Sbjct: 264 FGK-MFPRKSHKRKLKVREAREILRQSEAEKLIDHERVLRLAIRRTEQAGIIFLDEIDKI 322

Query: 256 VARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313
            ++  G+  G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+P+DL+
Sbjct: 323 ASKGGGSSQGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPSDLI 382

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+QGRFP+RV L  L + +F  ILT+ ++ L+ QY  L+ TE I L FT+ +I  LA +
Sbjct: 383 PELQGRFPIRVELGPLGEEEFYRILTEPQNALLKQYSALLATEDIELTFTDGAIRELARL 442

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           A  +NS   +IGARRL T++ER+LE+++F A ++ EK   + A+YV+  +     + D+ 
Sbjct: 443 AAEVNSRTENIGARRLHTMLERLLENLAFEAPEMTEKKFEVTADYVQEQLYGVVKDEDLS 502

Query: 434 HFIL 437
            FIL
Sbjct: 503 RFIL 506


>gi|298530975|ref|ZP_07018376.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298508998|gb|EFI32903.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 469

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/472 (45%), Positives = 312/472 (66%), Gaps = 40/472 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PREIV ELDRYIIGQQDAK  VAIALRNRWRRQQL  +LR+E+ PKNI+++GPT
Sbjct: 1   MSTTLTPREIVHELDRYIIGQQDAKNMVAIALRNRWRRQQLDPELREEIAPKNIIMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RRLA+LAG+PF KVE +KFTE+GYVGR+VE +IRDL+++ +N+VR   R++V
Sbjct: 61  GVGKTEVARRLAKLAGSPFFKVEASKFTEVGYVGRDVESMIRDLMEIGVNLVRSEEREKV 120

Query: 123 REQASINAEERILDALV-------------------------------------GKTATS 145
           + +A  NAEER+LD L+                                      +   +
Sbjct: 121 QAKAEANAEERLLDLLLPPKKAPEGQQGGQGQQQVAFQLESTGQAGDGYSQDQQSQADEN 180

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
            TRE  RK  RDG ++D+ +++EV    S++    +PG   +  +   ++FS+V    +K
Sbjct: 181 RTREKLRKLWRDGRLNDRTVEVEV-QAGSNVEIMSMPGMEDME-MQFRDMFSRVF-PKKK 237

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
           K  ++ V+  Y  L+++E++RL+DMD V   +   VE  GI+F+DE DK+ A D  +   
Sbjct: 238 KTKKVKVKNAYEILLQEETERLVDMDKVTEIAKDRVEQSGIIFIDEIDKVCASDKSSKAD 297

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRDLLP+VEG  V+TKYG + +DHILFIA+GAFH ++P+DL+PE+QGRFP+RV 
Sbjct: 298 VSREGVQRDLLPVVEGCVVNTKYGMVRSDHILFIAAGAFHYAKPSDLVPELQGRFPLRVE 357

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L   DF  ILT+ ++ L  QY+ L++TEGI L+F   +++ L+  A  +N    +IG
Sbjct: 358 LSALTGEDFYRILTEPQNALTRQYRALLETEGISLEFDNQALEELSSFAQKVNDETENIG 417

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T+ME++L+D+SF A +L  + + +D EYVR  + D   + D+  +IL
Sbjct: 418 ARRLYTIMEKLLQDLSFKAPELAGQKITVDKEYVREQLKDVQEDRDLTRYIL 469


>gi|238028912|ref|YP_002913143.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           glumae BGR1]
 gi|237878106|gb|ACR30439.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae
           BGR1]
          Length = 444

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/446 (49%), Positives = 313/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALV--------GKTATSN------TREVFRKKLRDGEISDKEIDIEVADT 172
              AE+RILD L+        G  A S       TR+ FRK+LR+G + DKEI++++   
Sbjct: 121 QDQAEDRILDILLPQPRAVGFGSNAESANEDNNATRQTFRKRLREGALDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    +  +FS  +G G+K + ++ +++    L  +E+ +L++ + 
Sbjct: 181 QAGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAGKLLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++V+TKYG I
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKIASRNHEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 RTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA+VA ++N    +IGARRL TV+E++LED+SF+A +   ++
Sbjct: 359 LLATEEVQLEFAADGIRRLAEVAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 419 VTIDAGYVDRALGEVSKDEDLSRYVL 444


>gi|171320571|ref|ZP_02909595.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MEX-5]
 gi|171094198|gb|EDT39281.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MEX-5]
          Length = 447

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +G G+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGVDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVERALGEVSQDEDLSRYVL 447


>gi|170288216|ref|YP_001738454.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2]
 gi|238688817|sp|B1L8X3|HSLU_THESQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170175719|gb|ACB08771.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2]
          Length = 463

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTAT----------------------------SNTREVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ ++EI+IE+ +T S       PG   +GI  ++ +FS ++   +KKK +M V
Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKQKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK +V+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRIVVDAEYVRRRLERIVQDEDLSAYIL 463


>gi|229086382|ref|ZP_04218558.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-44]
 gi|228696898|gb|EEL49707.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-44]
          Length = 463

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G +  +N              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGSQNANQTSETHDDTEIEKKRQEVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           KKL  G + D+ + IEVA+  S  S FD+  G   G+  +   F   +GS    + KK +
Sbjct: 181 KKLASGLLEDEVVSIEVAEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ L+ QY  L+ TEGI ++F++D+I  +A++A  +N    +IGARRL
Sbjct: 356 SVDDFVKILVEPDNALVKQYIALLATEGIEIEFSDDAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|172062041|ref|YP_001809693.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           ambifaria MC40-6]
 gi|238689143|sp|B1YPR3|HSLU_BURA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|171994558|gb|ACB65477.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MC40-6]
          Length = 447

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/446 (47%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+         G    +N     TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R++ G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDATYVDRALGEVAQDEDLSRYVL 447


>gi|325290380|ref|YP_004266561.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965781|gb|ADY56560.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 460

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/463 (48%), Positives = 318/463 (68%), Gaps = 36/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++I+GQ++AKRAVA+ALRNR+RR  LP  ++++++PKNIL++GPTGVG
Sbjct: 3   QLTPREIVSELDKHIVGQREAKRAVAVALRNRYRRSLLPEAMQEDVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDL ++A+ +V+  +  EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEIALRMVKAEKMKEVEVQ 122

Query: 126 ASINAEERILDALV-GKTATSNT----------------------------REVFRKKLR 156
           A  NAE+R++  LV  K   S +                            R++  +KL+
Sbjct: 123 AEKNAEKRLISILVPSKKKESGSLNPFQYLFSQEQEQKEQEQPVTPELEKDRQLIAQKLQ 182

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGI-LNLSELFSKVMGSGRKKKIRMSVQKC 215
            GE+   E  I   +     S  D+ GGA + + +N+ ++ S +    RKK+ R++V++ 
Sbjct: 183 TGEL---EKHIVEVEVEESSSYADMLGGAGMELGINIQDMMSGMFPKKRKKR-RVTVKEA 238

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L ++E+  LID +   +++I+  E  GIVF+DE DKI  RD G+G  VSR GVQRD+
Sbjct: 239 RRILAQEEAQNLIDHEDAVQEAIRRAEQEGIVFIDEIDKIAGRD-GSGPDVSRGGVQRDI 297

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LPLVEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF+
Sbjct: 298 LPLVEGSTVVTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLSVADFK 357

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+   +LI Q   L++TEGI + F+ED+I+ LA+VA ++NST  +IGARRL T++E+
Sbjct: 358 NILTEPHFSLIKQSSALLQTEGINVKFSEDAIEELAEVAYDVNSTTENIGARRLHTIVEK 417

Query: 396 VLEDISFSASDLQEK-TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           VLE++SF AS+L E  TV I+ +YVR  I D     D+  +IL
Sbjct: 418 VLEELSFEASELPEDYTVTINKDYVRKRINDVVQNQDLSKYIL 460


>gi|110639364|ref|YP_679573.1| ATP-dependent protease ATP-binding subunit HslU [Cytophaga
           hutchinsonii ATCC 33406]
 gi|122966584|sp|Q11QT3|HSLU_CYTH3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110282045|gb|ABG60231.1| ATP-dependent hsl protease, ATP-binding subunit (heat shock
           protein) [Cytophaga hutchinsonii ATCC 33406]
          Length = 464

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/459 (46%), Positives = 308/459 (67%), Gaps = 30/459 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV+ELD+YIIGQ DAKR VAIALRNRWRR    AD+R E+MP NILL+GPTGVGK
Sbjct: 8   LTPTEIVAELDKYIIGQHDAKRNVAIALRNRWRRMHADADMRKEIMPNNILLIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF KVE +KFTE+GYVGR+VE ++RDLV+ A+N+V+  +++EV+ + 
Sbjct: 68  TEIARRLAKLADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVKTQKKEEVKIKV 127

Query: 127 SINAEERILDALVG---------KTATSN-----------------TREVFRKKLRDGEI 160
           S   E+ +LD L+          KTA++                  TRE+FR+K+R GE+
Sbjct: 128 SQVVEDILLDLLIPPVKSTGMGFKTASTQSIDTNEIPDNDQELNERTRELFREKIRSGEL 187

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            +++++I V      +         +  ++N+ E+   +M    KK+ ++S+ +    L+
Sbjct: 188 DERKVEINVQQQGPGVGVVGGAMDEA-SMMNIQEMIGNMMPKKTKKR-KLSIAEARKILL 245

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +ES +LIDMD V  ++I+  EN GI+F+DE DK+ +   GNG  VSREGVQRDLLP+VE
Sbjct: 246 EEESAKLIDMDDVKDEAIRKTENMGIIFIDEIDKVASSKKGNGPDVSREGVQRDLLPIVE 305

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V+TKYG+++TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL ++DF  IL +
Sbjct: 306 GSAVNTKYGTVHTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEADFYHILKE 365

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY+ L+ +E + ++F +D++ A++++A  LN  V +IGARRL TVM  +L ++
Sbjct: 366 PKNALTRQYQALLSSENVNIEFHDDALKAISEIAFELNVEVENIGARRLHTVMSHLLNEL 425

Query: 401 SFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F   D  E   TVVI  E V   +       D+  FIL
Sbjct: 426 LFDVPDKIETHSTVVITKELVDQKLKGLVKNRDLSQFIL 464


>gi|15643288|ref|NP_228332.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           maritima MSB8]
 gi|281411740|ref|YP_003345819.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           naphthophila RKU-10]
 gi|11133192|sp|Q9WYZ2|HSLU_THEMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|4981035|gb|AAD35607.1|AE001728_8 heat shock protein HslU [Thermotoga maritima MSB8]
 gi|281372843|gb|ADA66405.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           naphthophila RKU-10]
          Length = 463

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/465 (49%), Positives = 319/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTATSNT----------------------------REVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAMPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ D+EI+IE+ +T S       PG   +GI  ++ +FS ++   RKKK +M V
Sbjct: 181 EKLRKGELEDEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKRKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDFILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VV+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463


>gi|307297638|ref|ZP_07577444.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916898|gb|EFN47280.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 462

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/459 (45%), Positives = 314/459 (68%), Gaps = 33/459 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV ELD+YI+GQ  AKRAVA+A+RNR RRQ+LP ++R +++PKNIL++GPTGVGK
Sbjct: 9   LTPKRIVEELDKYIVGQDKAKRAVAVAMRNRIRRQKLPEEIRRDVIPKNILMMGPTGVGK 68

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L G+PF KVE T+FTE+GYVG+NVE IIR+LVDV +N+V++ +  EV  +A
Sbjct: 69  TEIARRLAELTGSPFTKVEATRFTEVGYVGKNVESIIRELVDVGVNMVKQEKMGEVEGKA 128

Query: 127 SINAEERILDALVGKTATS----------------------------NTREVFRKKLRDG 158
           S   EERIL+ALV    T                             N RE +R +LR G
Sbjct: 129 SYQVEERILEALVPGPQTKAAGPRNIIELFQGQQQPKPSQEEAERIRNRREDYRDRLRSG 188

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           ++ D +I++EV D S  +    IPG   +GI ++S +   ++    K++ +M +      
Sbjct: 189 DLEDLDIEVEVEDHSQQM--IMIPGMEDMGI-DMSGVLGGMVPKKTKRR-KMRIADARKT 244

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+  E+++L+DMD V  ++I+ V+N G+VF+DE DKI  R   +G  VSREGVQRDLLP+
Sbjct: 245 LLPIEAEKLLDMDKVVAEAIERVQNRGMVFIDEIDKITFRSGSHGPDVSREGVQRDLLPI 304

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           +EG++V+TKYG I TD+ILF+A+GAFH ++P+DL+PE QGRFP+RV L +L++ +F  IL
Sbjct: 305 IEGTTVTTKYGQIRTDYILFVAAGAFHTAKPSDLIPEFQGRFPIRVELDALSQKEFLRIL 364

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ +  QY  L++TEG+ + FTED +  +A V+ +LN  + +IGARRL TV+E+VLE
Sbjct: 365 VEPKNAITKQYMALLETEGVKVTFTEDGLREIARVSHSLNEKIENIGARRLYTVVEKVLE 424

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++SF+A ++ ++ +V+D  YV   IG+  ++ D+  FIL
Sbjct: 425 EVSFNAPEVPQE-IVVDVNYVNERIGEIAADEDLSAFIL 462


>gi|319778977|ref|YP_004129890.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella
           equigenitalis MCE9]
 gi|317109001|gb|ADU91747.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella
           equigenitalis MCE9]
          Length = 444

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/442 (51%), Positives = 304/442 (68%), Gaps = 15/442 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD+YIIGQ  AK++VA+ALRNRWRRQQ+   LR E+ PKNI+++GPTGVGK
Sbjct: 7   MTPKEIVSELDKYIIGQTKAKKSVAVALRNRWRRQQVAEPLRTEIHPKNIMMIGPTGVGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+++  +RES    V   A
Sbjct: 67  TEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLTDISVKQLRESDMKRVNSIA 126

Query: 127 SINAEERILDALVGKTATS--------NT-REVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AE+RILD LV  T  S        NT R+VFRKKLR+G++ D EI+++V   +    
Sbjct: 127 QDAAEDRILDILVTPTHDSEGNPVREENTARQVFRKKLREGKLDDMEIEVDVKPPAV--- 183

Query: 178 NFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             +I G  +V  +  NL  LFS +    RK K +M+++K    L  +ES++ ++ D +  
Sbjct: 184 QMEILGIDAVDDMRDNLKGLFSSI-SKERKNKKKMTIKKALKVLTDEESEKHLNEDDIRE 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI +    +   VSR+GVQRDLLPL+EG++V TKYG + TDH
Sbjct: 243 RAIINVEQNGIVFLDEIDKITSSSEKSSADVSRQGVQRDLLPLIEGTTVKTKYGMVKTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFI SGAFH+S+P+DL+PE+QGR P+RV L +L+  DF  IL +T+S+LI QY  L+ T
Sbjct: 303 ILFITSGAFHLSKPSDLIPELQGRLPIRVELDALSTDDFVRILKETDSSLIKQYTALLDT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + LDFTED I  +A++A  +N  + +IGARRL TVME++LE ISF A      T+ ID
Sbjct: 363 ESVKLDFTEDGIRRIAELAYEVNENMENIGARRLYTVMEKLLEQISFDADSNSGSTLTID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   + D   + D+  ++L
Sbjct: 423 KDYVNDKLQDIVKDQDLSQYVL 444


>gi|312143681|ref|YP_003995127.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp.
           'sapolanicus']
 gi|311904332|gb|ADQ14773.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp.
           'sapolanicus']
          Length = 464

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/455 (46%), Positives = 326/455 (71%), Gaps = 26/455 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD+YIIGQ DAK++VAIALRNR+RR+ +  D++DE++PKNIL++GPTGVGK
Sbjct: 12  LTPKEIVSELDKYIIGQDDAKKSVAIALRNRYRRKLVRDDMKDEIIPKNILMIGPTGVGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APFIK+EVTKFTE+GYVGR+VE +IRD+ + +I +V+E + ++V  +A
Sbjct: 72  TEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMIRDITETSIRMVKEHKMEKVEVEA 131

Query: 127 SINAEERILDALV-GKTATSNT----------------------REVFRKKLRDGEISDK 163
              A ERI+D ++ GK    +                       R+   +++++G++ D 
Sbjct: 132 EKMAIERIVDIMLPGKNKKKDDYFSKMADKDESKDELDDRVKARRQRMFERIKEGKLDDH 191

Query: 164 EIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           +I+IEV A++   +  F   G   +GI N  ++   +  S +KKK ++++++    L + 
Sbjct: 192 KIEIEVEANSQQMLEVFSGSGVEEMGI-NFQDMLGNIFPS-KKKKKKVTIKQAKEILKQS 249

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ +LIDM+ V  ++I  VEN GI+FLDE DKI  R+SG+G  VSR+GVQRD+LP+VEGS
Sbjct: 250 EAQKLIDMEQVKSEAIDKVENDGIIFLDEIDKIAGRESGSGPEVSRQGVQRDILPIVEGS 309

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V TK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ IL   +
Sbjct: 310 TVVTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRENFKDILLLPQ 369

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++LI QYK L++TEG+ ++F+E++++ +++ A ++N    +IGARRL T+ME++LED+SF
Sbjct: 370 NSLIKQYKALLETEGVEIEFSEEAVEEISNFAFDINEETENIGARRLHTIMEKLLEDLSF 429

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            A  L+   ++ID +YV   + D  ++ D+  +IL
Sbjct: 430 EAPGLETDKIIIDVDYVHDKLKDVVADKDLSKYIL 464


>gi|152976195|ref|YP_001375712.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189043903|sp|A7GRF9|HSLU_BACCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|152024947|gb|ABS22717.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cytotoxicus
           NVH 391-98]
          Length = 463

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +LP DLRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLPEDLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMMVKV 120

Query: 123 REQASINAEERILDALVGK------------------------------TATSNTREVFR 152
           +++A   A +R+++ LV                                T     R+   
Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQTGFKNPLEMLFGGNQNVNQTSESQDDTEIQKKRQEVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           K+L  G + ++ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 KQLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEG++V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGANVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ L+ QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 SVDDFVKILIEPDNALVKQYAALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + V I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKVTITPQYVEEKLATIAKNKDVSQFIL 463


>gi|320535376|ref|ZP_08035490.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis
           F0421]
 gi|320147778|gb|EFW39280.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis
           F0421]
          Length = 471

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/466 (45%), Positives = 319/466 (68%), Gaps = 37/466 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVSELD+YIIGQ  AKRAVAIALRNR RR +LP ++R+E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKQIVSELDKYIIGQNKAKRAVAIALRNRTRRLKLPEEIREEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+ APF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   ++ ++E+A
Sbjct: 68  TEIARRLAKLSKAPFLKVEATKYTEVGYVGRDVESMIRDLMMVGYAMVKTEMQESLKEKA 127

Query: 127 SINAEERILDALVG-----------------------KTATSN---------TREVFRKK 154
             N E+R+LD L+                        K  T N         TRE F + 
Sbjct: 128 EKNVEDRLLDVLLPGSQKPKEKKSAEKPAPIMIPSMVKETTPNESETNTMPDTREKFCQM 187

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI---LNLSELFSKVMGSGRKKKIRMS 211
           LRDG++ +K +++ V    S  + F+I  G+S      + ++ + S +MG  R K+ +++
Sbjct: 188 LRDGKLEEKTVEVTVQPQGS--AGFEIFAGSSNMEDIEMTMNNITSMIMGGNRAKRKKVT 245

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+ +E D+L+D D +  ++ + V+  GI+F+DE DK+ ++       VSREGV
Sbjct: 246 VKEARDILLAEELDKLVDHDKITDEAKRRVQQMGIIFIDEIDKVASKSERGSADVSREGV 305

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TK+G I+T HILFIA+GAF++S+P+DL+PE QGRFP+RV L+SL++
Sbjct: 306 QRDILPIVEGSNVNTKFGVIDTRHILFIAAGAFNISKPSDLIPEFQGRFPLRVELESLHQ 365

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF+ IL + ++ L  QY EL+KTE + ++FT+++ID ++ +A ++N+ + +IGARRL T
Sbjct: 366 EDFKRILLEPKNALTKQYSELLKTENVTIEFTDEAIDRMSFLAADVNARMENIGARRLNT 425

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ME +LEDISF+ASD+  +TV ID  YV   + D   + D+  +IL
Sbjct: 426 IMEMLLEDISFNASDMSGQTVTIDVAYVDERLKDIVQDQDLSRYIL 471


>gi|325473782|gb|EGC76970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           denticola F0402]
          Length = 484

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 318/478 (66%), Gaps = 46/478 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++ V+ELD+YIIGQ  AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG
Sbjct: 7   DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   +++++EQ
Sbjct: 67  KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126

Query: 126 ASINAEERILDALV-----GKTAT------------------------------------ 144
           A  N EE +LD L+      KTA                                     
Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAAAAQTQDVSQASSGTTISLPSVSSTAQAEEHKAQNEN 186

Query: 145 --SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKVM 200
             S TRE FR  LR+ ++ DK +++ ++ +    +     GG+++  +   +S + S +M
Sbjct: 187 DMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSMLM 246

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-D 259
           G  + K+  +SV++    +M ++ DR++D D V  ++ Q VE  GI+F+DE DK+ +R D
Sbjct: 247 GGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRSD 306

Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
            G G  VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QGR
Sbjct: 307 RGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQGR 366

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FP+RV L++L+  DF+ IL + ++ L  QY EL++TEG+ ++F +++ID ++ +A ++NS
Sbjct: 367 FPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVNS 426

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL T+ME +LEDISF+AS++  +TV ID  YV   + D   + D+  +IL
Sbjct: 427 KNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 484


>gi|284036544|ref|YP_003386474.1| heat shock protein HslVU, ATPase HslU [Spirosoma linguale DSM 74]
 gi|283815837|gb|ADB37675.1| heat shock protein HslVU, ATPase subunit HslU [Spirosoma linguale
           DSM 74]
          Length = 461

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/462 (46%), Positives = 311/462 (67%), Gaps = 29/462 (6%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L  + +PR+IV+ELD+YIIGQ DAKR VAIALRNRWRR    AD++ E+ P NIL++G 
Sbjct: 3   ELLKDLTPRQIVAELDQYIIGQHDAKRNVAIALRNRWRRMNSAADMQREITPNNILMIGA 62

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA++A APFIKVE +KFTE+GYVGR+VE ++RDLV+ A+N+VR ++++ 
Sbjct: 63  TGVGKTEIARRLAKIADAPFIKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVRAAKKEA 122

Query: 122 VREQASINAEERILDALVGKTATSN-------------------TREVFRKKLRDGEISD 162
           V+ +A    E+ ILD L+     +N                   TRE FR+K+R GE+ D
Sbjct: 123 VQVKAQQMVEDVILDILIPPVKPTNGHMGFENEKKDADAELNERTRERFREKIRSGEMDD 182

Query: 163 KEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           ++IDI+V    +   N  I GGA   + ++N+ E+   +M   R KK ++S+ +    L+
Sbjct: 183 RKIDIDVQQAQT--PNIGIMGGAIDDMSMMNIQEMIGGMM-PKRGKKRKVSIAEARKILL 239

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLP 277
            +E+ +LIDMD V  ++I+  E+ GI+F+DE DK+ +  SGNG G   VSREGVQRDLLP
Sbjct: 240 EEEAAKLIDMDEVKEEAIRKAEDAGIIFIDEIDKVASARSGNGGGGPDVSREGVQRDLLP 299

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V+TKYG I+TDHILF+A+GAFHV++P+DL+PE+QGRFP+RV L+SL++ DF  I
Sbjct: 300 IVEGSAVNTKYGVIHTDHILFVAAGAFHVAKPSDLIPELQGRFPIRVELQSLSEDDFYQI 359

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ L  QY  ++K E + L F +D++  LA +A  +NS V +IGARRLQTV+  ++
Sbjct: 360 LKEPKNALTKQYVAMLKAESVDLTFQDDALRELARIAFEVNSDVENIGARRLQTVLSHLM 419

Query: 398 EDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D  F   D+      VV+  E V   +       D+  FIL
Sbjct: 420 NDFMFDIPDVIGANAHVVVTKELVNEKLNGLVKNRDLSQFIL 461


>gi|188586011|ref|YP_001917556.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229486077|sp|B2A337|HSLU_NATTJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|179350698|gb|ACB84968.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 448

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/447 (47%), Positives = 314/447 (70%), Gaps = 16/447 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P+EIV  LD+YIIGQ  AKR++AIA+RNR+RRQ+L  +L++E++PKNIL++GPTG
Sbjct: 5   TEELTPQEIVERLDKYIIGQNKAKRSMAIAIRNRYRRQKLEEELKEEVIPKNILMIGPTG 64

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+L  APFIK+EVTKFTE+GYVGRNVE +++DLV  +I +V E + +EV 
Sbjct: 65  VGKTEIARRLAKLIKAPFIKIEVTKFTEVGYVGRNVESMVKDLVAESIQLVEEEKHEEVS 124

Query: 124 EQASINAEERILDALVGKTATSNT----------REVFRKKLRDGEISDKEIDIEVADTS 173
           +QA   AE RI+D L+ +  +S+           R   +++L  G + D+ + +++    
Sbjct: 125 KQARKQAENRIIDLLLSEKKSSSKGEQETDLRTRRREIKEQLFKGLLEDEYVTVKLEKEP 184

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   N        +G+ N  ELF K++    + K +M+V++    L R E+D+LI+ D V
Sbjct: 185 AQDDNLMGEQFEEMGV-NFKELFGKILPKESEHK-KMTVKEARKVLTRQEADKLINKDQV 242

Query: 234 HRDSIQMVENYGIVFLDEFDKIVA---RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++++I+  ENYGI+FLDEFDKI A   + SG G  VSREGVQRD+LP+VEGS+V+T+YG 
Sbjct: 243 NQEAIERAENYGIIFLDEFDKIAASSGKQSG-GQDVSREGVQRDILPIVEGSTVNTRYGR 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHI+FI +GAFH S+PADL+PE+QGRFP+RV L SL K DF  ILT+  + L+ QYK
Sbjct: 302 VKTDHIMFIGAGAFHDSKPADLIPELQGRFPIRVELDSLTKDDFYRILTEPSNALLEQYK 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L++TE + ++FTED+I+ LA++   +N    DIGARRL T++E +LE++SF A +++ +
Sbjct: 362 ALLRTEEVKVNFTEDAIEELANMCEYVNENTEDIGARRLHTILETLLEELSFYAPEMKGQ 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V I++ YV+  + D  +E D   FIL
Sbjct: 422 EVEINSNYVKDQLQDIVTEKDSSRFIL 448


>gi|114566380|ref|YP_753534.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122318542|sp|Q0AYP1|HSLU_SYNWW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114337315|gb|ABI68163.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/467 (47%), Positives = 315/467 (67%), Gaps = 36/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  +PREIV ELD+YIIGQQ+AK+AVAIALRNR+RR+ LP +LR+E+ PKNI+++G TGV
Sbjct: 2   FKLTPREIVEELDKYIIGQQEAKKAVAIALRNRYRRKLLPDELREEIYPKNIIMIGSTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL  APFIKVE +KFTE+GYVGR+V+ ++RDLV+ +I +V++ +   V +
Sbjct: 62  GKTEIARRLARLVKAPFIKVEASKFTEVGYVGRDVDSMVRDLVETSIRLVKQEKMAAVEQ 121

Query: 125 QASINAEERILDALV---GKTATS--NTRE----------------------------VF 151
           +    AEERI+D L+   G+ + S  N  E                            + 
Sbjct: 122 KGRQMAEERIVDILLPFDGRKSKSPKNPFEFLLGSIQERDDVDDESERRRREIGQRREIL 181

Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
           R+K+   E+ D+ I+IEV + + S +  F   G   +GI NL ++   +M   +KK+ ++
Sbjct: 182 RQKINRLELEDETIEIEVEEKNPSFMEIFSGSGVEEMGI-NLQDMLGNLMPRNKKKR-KV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           S+ +    L  +ES RL+DMD +HR+ I+  E  GI+FLDE DKI +++S  G  VSR G
Sbjct: 240 SIAEARRILTYEESQRLLDMDEIHREGIKRAEEDGIIFLDEIDKIASKESNYGPDVSRGG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG   TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL 
Sbjct: 300 VQRDILPIVEGSTVITKYGPARTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLK 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K D + ILT+  ++LI QY  L+ TE + +DFT ++ID +A+ A  +NS   DIGARRL 
Sbjct: 360 KEDLKRILTEPNNSLIKQYIALLSTEKLTMDFTPEAIDYIAERAYEVNSRTEDIGARRLH 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TVME++LED+ F++ D+  + +VID +YV   +     + D+  +IL
Sbjct: 420 TVMEKLLEDLLFNSPDMAGEKLVIDIDYVAERLDRIVEDEDLSRYIL 466


>gi|309389214|gb|ADO77094.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium
           praevalens DSM 2228]
          Length = 463

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/461 (45%), Positives = 324/461 (70%), Gaps = 27/461 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +P+EIV+ELD+YIIGQ++AK++VAIALRNR+RR+ + A+++DE++PKNIL++GP
Sbjct: 5   KLDNQLTPKEIVAELDKYIIGQKNAKKSVAIALRNRYRRKLVKAEMKDEIIPKNILMIGP 64

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA++A APFIK+EVTKFTE+GYVGR+VE ++RDL + AI IV+E++R+ 
Sbjct: 65  TGVGKTEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMVRDLTESAIRIVKENKREA 124

Query: 122 VREQASINAEERILDALVGKTATSNT------------------------REVFRKKLRD 157
           V  +A   A ++I+D ++     +N                         R+   K++  
Sbjct: 125 VEIEAEKMAIQKIVDHMLPGKKNNNDDYYSNLVDDVKKNPANLDDRVAARRKRMFKRIES 184

Query: 158 GEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           G++  ++I+IEV + +  +   F   G   +GI N  ++   +    +K+K ++S+++  
Sbjct: 185 GQLDQQKIEIEVEENNQQMMEVFSGSGVEEMGI-NFQDMLGNIF-PNKKEKKKVSIKQAK 242

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L  +E  +LIDM+ V  ++IQ VE  GI+FLDE DKI  ++SG+G  VSR+GVQRD+L
Sbjct: 243 EILKDEEVQKLIDMEQVKVEAIQKVEEDGIIFLDEMDKIAGKESGSGPEVSRQGVQRDIL 302

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+VSTK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ 
Sbjct: 303 PIVEGSTVSTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRQNFKD 362

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL   +++L+ QYK L++TEGI ++FTE +++ ++  A ++N    +IGARRL T+ME++
Sbjct: 363 ILLLPQNSLVKQYKALLETEGIEIEFTEKAVEEISSFAYDINEETENIGARRLHTIMEKL 422

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A ++ +K V I+ E V+  + D   + D+  +IL
Sbjct: 423 LEDLSFEAPEITDKKVEINLECVKDKLQDVVKDKDLSKYIL 463


>gi|194014785|ref|ZP_03053402.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus
           ATCC 7061]
 gi|194013811|gb|EDW23376.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus
           ATCC 7061]
          Length = 466

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/464 (45%), Positives = 313/464 (67%), Gaps = 36/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E +  +V+E+A
Sbjct: 66  TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEEKMKDVQEEA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKK----L 155
              A +R++  LV GK  + + +  F                          RK+    L
Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + IEV +     S FD+  G+ +  +  N+ +    +M   +KK+ +++V+
Sbjct: 186 AMGELEDHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALGNLMPK-KKKRRKLTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI      +   VSREGVQR
Sbjct: 243 EARKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L  L+  D
Sbjct: 303 DILPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ L+ QYK L++TEGI L+F++D+I  +A+VA ++N    +IGARRL T++
Sbjct: 363 FVKILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++SF A D+   TV I  +YV   +G   +  D+  FIL
Sbjct: 423 EKLLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466


>gi|30263833|ref|NP_846210.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Ames]
 gi|47529257|ref|YP_020606.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49186679|ref|YP_029931.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Sterne]
 gi|49478401|ref|YP_037890.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141658|ref|YP_085170.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L]
 gi|165873314|ref|ZP_02217919.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0488]
 gi|167642029|ref|ZP_02400259.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0193]
 gi|170689657|ref|ZP_02880837.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0465]
 gi|170709355|ref|ZP_02899769.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0389]
 gi|177656000|ref|ZP_02937127.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0174]
 gi|196047759|ref|ZP_03114952.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus 03BB108]
 gi|218904957|ref|YP_002452791.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH820]
 gi|227813263|ref|YP_002813272.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis
           str. CDC 684]
 gi|228928877|ref|ZP_04091909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229092869|ref|ZP_04224003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-42]
 gi|229186068|ref|ZP_04313238.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BGSC 6E1]
 gi|229604413|ref|YP_002868067.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. A0248]
 gi|254683464|ref|ZP_05147324.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721985|ref|ZP_05183774.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. A1055]
 gi|254735867|ref|ZP_05193573.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Western North America USA6153]
 gi|254739607|ref|ZP_05197301.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Kruger B]
 gi|254759319|ref|ZP_05211344.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Australia 94]
 gi|62286774|sp|Q636J7|HSLU_BACCZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286815|sp|Q6HEY6|HSLU_BACHK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286872|sp|Q81WK6|HSLU_BACAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226704515|sp|B7JJA7|HSLU_BACC0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802294|sp|C3P5N1|HSLU_BACAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802295|sp|C3L798|HSLU_BACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|30258477|gb|AAP27696.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. Ames]
 gi|47504405|gb|AAT33081.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180606|gb|AAT55982.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. Sterne]
 gi|49329957|gb|AAT60603.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975127|gb|AAU16677.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus cereus E33L]
 gi|164710952|gb|EDR16524.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0488]
 gi|167510009|gb|EDR85425.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0193]
 gi|170125729|gb|EDS94642.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0389]
 gi|170666381|gb|EDT17164.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0465]
 gi|172079899|gb|EDT65007.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0174]
 gi|196021407|gb|EDX60121.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus 03BB108]
 gi|218537902|gb|ACK90300.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH820]
 gi|227005941|gb|ACP15684.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis
           str. CDC 684]
 gi|228597487|gb|EEK55137.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BGSC 6E1]
 gi|228690491|gb|EEL44274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-42]
 gi|228830684|gb|EEM76289.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229268821|gb|ACQ50458.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. A0248]
          Length = 463

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|42526720|ref|NP_971818.1| ATP-dependent protease ATP-binding subunit HslU [Treponema
           denticola ATCC 35405]
 gi|62286839|sp|Q73NE3|HSLU_TREDE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|41817035|gb|AAS11729.1| heat shock protein HslVU, ATPase subunit HslU [Treponema denticola
           ATCC 35405]
          Length = 485

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 318/479 (66%), Gaps = 47/479 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++ V+ELD+YIIGQ  AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG
Sbjct: 7   DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   +++++EQ
Sbjct: 67  KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126

Query: 126 ASINAEERILDALV-----GKTAT------------------------------------ 144
           A  N EE +LD L+      KTA                                     
Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASSGTTISLPSVSSTAQAEEHKAQNE 186

Query: 145 ---SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKV 199
              S TRE FR  LR+ ++ DK +++ ++ +    +     GG+++  +   +S + S +
Sbjct: 187 NDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSML 246

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR- 258
           MG  + K+  +SV++    +M ++ DR++D D V  ++ Q VE  GI+F+DE DK+ +R 
Sbjct: 247 MGGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRS 306

Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318
           D G G  VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QG
Sbjct: 307 DRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQG 366

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           RFP+RV L++L+  DF+ IL + ++ L  QY EL++TEG+ ++F +++ID ++ +A ++N
Sbjct: 367 RFPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVN 426

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           S   +IGARRL T+ME +LEDISF+AS++  +TV ID  YV   + D   + D+  +IL
Sbjct: 427 SKNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 485


>gi|167037674|ref|YP_001665252.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116089|ref|YP_004186248.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|326389488|ref|ZP_08211055.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           ethanolicus JW 200]
 gi|259491381|sp|B0K9V3|HSLU_THEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166856508|gb|ABY94916.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929180|gb|ADV79865.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|325994493|gb|EGD52918.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 459

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/458 (46%), Positives = 318/458 (69%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGK--TATSNT------------------------REVFRKKLRDGE 159
           A   AE+R++D ++GK    T N                         RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF+A +L  + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 459


>gi|228954105|ref|ZP_04116134.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071327|ref|ZP_04204550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus F65185]
 gi|229081084|ref|ZP_04213594.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock4-2]
 gi|229180105|ref|ZP_04307449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 172560W]
 gi|229191998|ref|ZP_04318968.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 10876]
 gi|228591549|gb|EEK49398.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 10876]
 gi|228603314|gb|EEK60791.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 172560W]
 gi|228702128|gb|EEL54604.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock4-2]
 gi|228711781|gb|EEL63733.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus F65185]
 gi|228805671|gb|EEM52261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 463

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|157692295|ref|YP_001486757.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus pumilus
           SAFR-032]
 gi|167017224|sp|A8FD80|CLPY_BACP2 RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|157681053|gb|ABV62197.1| T01 family HslU component of HslUV peptidase [Bacillus pumilus
           SAFR-032]
          Length = 466

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/464 (45%), Positives = 313/464 (67%), Gaps = 36/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E +  +V+E+A
Sbjct: 66  TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEDKMKDVQEEA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKK----L 155
              A +R++  LV GK  + + +  F                          RK+    L
Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + IEV +     S FD+  G+ +  +  N+ +    +M   +KK+ +++V+
Sbjct: 186 AMGELEDHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALGNLMPK-KKKRRKLTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI      +   VSREGVQR
Sbjct: 243 EARKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L  L+  D
Sbjct: 303 DILPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ L+ QYK L++TEGI L+F++D+I  +A+VA ++N    +IGARRL T++
Sbjct: 363 FVKILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++SF A D+   TV I  +YV   +G   +  D+  FIL
Sbjct: 423 EKLLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466


>gi|20807894|ref|NP_623065.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|22653791|sp|Q8R9Y3|HSLU_THETN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|20516460|gb|AAM24669.1| ATP-dependent protease, ATPase subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 461

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 316/462 (68%), Gaps = 26/462 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNIL+VG
Sbjct: 1   MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120

Query: 121 EVREQASINAEERILDALVGKTAT-------------------------SNTREVFRKKL 155
            V E+A   AEER++D L+GK                            S  RE  R++L
Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R GE+ +  ++IEV DT+  +       GA    + L ++FS ++   +KK  +++V + 
Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDLLPK-KKKLRKVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+  LIDMD V  ++++  EN GI+F+DE DKI +     G  VSREGVQRDL
Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EG +V TKYG + TD+ILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF 
Sbjct: 300 LPIIEGCTVMTKYGPVKTDYILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY+EL++TEG+ + +TE++I+ +A+VA  +N    DIGARRL TVME+
Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ED+SF A +L  + +VI A+YV+  + D  ++ ++  +IL
Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461


>gi|205373366|ref|ZP_03226170.1| ATP-dependent protease ATP-binding subunit [Bacillus coahuilensis
           m4-4]
          Length = 466

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 307/464 (66%), Gaps = 34/464 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  +PR+IV  LD+YI+GQQDAKR+VA+ALRNR+RR  L   L++E+ PKNIL++GPTGV
Sbjct: 6   FRLTPRQIVERLDQYIVGQQDAKRSVAVALRNRYRRSLLEDSLKEEIHPKNILMIGPTGV 65

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +   VR 
Sbjct: 66  GKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKEEKIQSVRG 125

Query: 125 QASINAEERILDALVGKTAT-----------------------------SNTREVFRKKL 155
           +A  NA +R+++ LV    +                             +  R +  +KL
Sbjct: 126 RAEDNANKRLIELLVPSKKSQASYKNPFEMIFGNSDSEPKEEPKEDFNLAENRSIVAEKL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
           ++GE+ ++ I +EV +     S FD+  G+ +  +  N  +  S  M   +KKK R++V+
Sbjct: 186 KNGELENEYISVEVEEQQP--SMFDMLQGSGMEQMGTNFQDALSNFMPK-KKKKRRLTVK 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DK+ ++ S +   VSREGVQR
Sbjct: 243 EARKVLTNEEASKLIDMDEVTQEAVFKAEQAGIIFIDEIDKVASKSSSSNADVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS++ TKYGS+ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L   D
Sbjct: 303 DILPIVEGSTIVTKYGSVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELQKLTIDD 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL + +  +  QY+ L+ TEGI ++F++D+I  LA++A  +N    +IGARRL T+M
Sbjct: 363 FVRILVEPDQAISKQYQALLSTEGIQIEFSDDAIHRLAEIAYEVNQETDNIGARRLHTIM 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A D+  + + I   YV   +G    + D+  FIL
Sbjct: 423 EKLLEDLSFEAPDITMEKIEITPAYVNEKLGKIAKDKDLSQFIL 466


>gi|258511367|ref|YP_003184801.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478093|gb|ACV58412.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 464

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 312/461 (67%), Gaps = 31/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV  LDRYI+GQ+ AKRAVAIALRNR+RR +L  +++ E+ PKNIL++GPTGVG
Sbjct: 6   ELTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRSKLSPEMQAEVTPKNILMIGPTGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+    + V+ +
Sbjct: 66  KTEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAERVKSE 125

Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156
           A   A +RI++ALV     ++   N  E+                          ++KL 
Sbjct: 126 AEARANDRIVEALVPDPGARSRARNPLEMLFSGGFAADRPQEPSSDQVREERRRVKQKLL 185

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + D  ++++V + +  ++   IPG  +  + NL E+   ++    KK+ +M+V++  
Sbjct: 186 MGALEDHYVEVDVEEQAGPMALGFIPGMGAESLGNLQEMLGNLLPKSTKKR-KMTVREAR 244

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+ +LIDMD V  ++I   EN+GI+F+DE DKI  R++ +G  VSREGVQRD+L
Sbjct: 245 KVLTQEEAQKLIDMDAVTAEAIYRAENHGIIFIDEMDKIAGRET-HGPDVSREGVQRDIL 303

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+VSTKYG++ TD++LFI +GAFHV++P+DL+PE+QGRFP+RV L+ L K DF  
Sbjct: 304 PIVEGSTVSTKYGAVKTDYMLFIGAGAFHVAKPSDLIPELQGRFPIRVELEPLTKDDFVR 363

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + E++LI QY  L++TEGI ++FT+++I+ +A++A  +N    +IGARRL T++E+V
Sbjct: 364 ILREPENSLIKQYTALLETEGIRVEFTDEAIERIAEMAQKVNEETENIGARRLHTLVEKV 423

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A ++    + I   YV   +GD     D+  FIL
Sbjct: 424 LEDLSFEAPEIHLGEIKITRAYVDEKLGDIVQNRDLSQFIL 464


>gi|228992557|ref|ZP_04152484.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           pseudomycoides DSM 12442]
 gi|228998605|ref|ZP_04158192.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock3-17]
 gi|229006105|ref|ZP_04163793.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock1-4]
 gi|228755181|gb|EEM04538.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock1-4]
 gi|228761073|gb|EEM10032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock3-17]
 gi|228767191|gb|EEM15827.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           pseudomycoides DSM 12442]
          Length = 463

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/469 (45%), Positives = 314/469 (66%), Gaps = 40/469 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  DLRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEDLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT----------REVF 151
           +++A   A +R+++ LV                         TS T          REV 
Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGNQNANQTSETQDDTEIEKKRREV- 179

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKI 208
            KKL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK 
Sbjct: 180 EKKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKR 235

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           ++SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSR
Sbjct: 236 KLSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSR 294

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS+V+TKYGS+ TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 295 EGVQRDILPIVEGSNVATKYGSVKTDYILFIAAGAFHMSKPSDLIPELQGRFPIRVELTK 354

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+  DF  IL + ++ L+ QY  L+ TEGI ++F++++I  +A++A  +N    +IGARR
Sbjct: 355 LSVDDFVKILVEPDNALVKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARR 414

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 415 LHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|118479051|ref|YP_896202.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418276|gb|ABK86695.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus thuringiensis str. Al
           Hakam]
          Length = 476

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 14  MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 73

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 74  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 133

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 134 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 193

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 194 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 249

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 250 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 308

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 309 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 368

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 369 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 428

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 429 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 476


>gi|189346637|ref|YP_001943166.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           limicola DSM 245]
 gi|189340784|gb|ACD90187.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium limicola
           DSM 245]
          Length = 490

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/478 (46%), Positives = 315/478 (65%), Gaps = 52/478 (10%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N +P +IV  LD+YIIGQ+DAK++VAIALRNR RRQ +  DLR+E+MP NI+++GPTG
Sbjct: 21  AHNLTPNQIVELLDKYIIGQKDAKKSVAIALRNRLRRQHVGDDLREEIMPNNIIMIGPTG 80

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EV+
Sbjct: 81  VGKTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVK 140

Query: 124 EQASINAEERILDALVGKTATSNT-------------------------------REVFR 152
           E+A++  EER+LD L+     S +                               RE   
Sbjct: 141 EKAALLVEERLLDILLPPAPPSRSHEDQDDDLDENRNAMAPADENDISQEVNRRSREKML 200

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---R 204
           ++LR G++ D++I+++ A  +        PGG     G L   E    +M    SG   +
Sbjct: 201 ERLRKGKLEDRQIEMDTASEN--------PGGMMQIFGPLGQMEEIGSIMQDLMSGLPRK 252

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           +KK R+++ +    L ++E  +LIDMD V +D+I  VE  GIVF+DE DKI A  +G+G 
Sbjct: 253 RKKRRVTIAEARRILEQEEVQKLIDMDAVVKDAINKVEQSGIVFIDEIDKIAAPSTGSGG 312

Query: 265 G----VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
           G    VSREGVQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHVS+P+DL+PE+QGRF
Sbjct: 313 GKGPDVSREGVQRDLLPIVEGSNVATKYGIVKTDHVLFIASGAFHVSKPSDLIPELQGRF 372

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV LKSL + DF  ILT  ++ LI QYK L+ TEG+ LDFT+ +I  +A +A  +N +
Sbjct: 373 PIRVELKSLTEEDFYKILTQPKNALIKQYKALISTEGVDLDFTDGAILEIARIAAKVNES 432

Query: 381 VGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V +IGARRL T+M  +LE++ F+  + + E+ VVID   V+  +    S+ D+  +IL
Sbjct: 433 VENIGARRLHTIMTNLLEELMFNIPESVTEEKVVIDEAMVQDKLSAVSSDRDLSQYIL 490


>gi|229544388|ref|ZP_04433446.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans
           36D1]
 gi|229324873|gb|EEN90550.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans
           36D1]
          Length = 472

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/470 (45%), Positives = 320/470 (68%), Gaps = 41/470 (8%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + +PR+IV  LD+YI+GQ++AKRAVA+ALRNR+RR  L   +R+E++PKNIL++GPTG
Sbjct: 8   TNSLTPRQIVERLDQYIVGQKEAKRAVAVALRNRYRRSLLSEKMREEIIPKNILMIGPTG 67

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RR+ARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E + + VR
Sbjct: 68  VGKTEIARRMARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAVRLVKEEKMNGVR 127

Query: 124 EQASINAEERILDALV--------------------GKTATS-----------NTREVFR 152
           +QA  NA ER++D LV                    G+  T+             ++  R
Sbjct: 128 DQAEKNANERLVDLLVPSRKKQGNFKNPFEMIFGGGGQQDTAPDEEEEEYSKREQKQRIR 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL +GE+ D+ + +EV + +S  S FD+  G+ +  + +S      +G+    + K+ +
Sbjct: 188 EKLLNGELEDEPVTVEVEEQAS--SMFDLFQGSGMEQMGMS--VQDALGNLLPKKTKRRK 243

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVS 267
           + V++    L +DE+ +LIDMD V +++I   E  GI+F+DE DKI +++ GNG    VS
Sbjct: 244 LPVREARKVLAQDEAQKLIDMDEVTQEAIFRAEQTGIIFIDEIDKIASKN-GNGSQADVS 302

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS+V TKYGSI TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L+
Sbjct: 303 REGVQRDILPIVEGSTVVTKYGSIKTDYILFIAAGAFHMAKPSDLIPELQGRFPIRVELE 362

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L  SDF  IL + ++ L+ QY  L++TEGI ++F++++I  +A++A  +N    +IGAR
Sbjct: 363 KLTVSDFVKILVEPDNALVKQYIALLETEGIQIEFSDEAITRIAEIAFEVNQNTDNIGAR 422

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T+ME++LED+SF A D+  + V I  +YV   +G      D+  +IL
Sbjct: 423 RLHTIMEKLLEDLSFEAPDIHLEKVSITPQYVDEKLGAISQNKDLSQYIL 472


>gi|289185458|gb|ADC91866.1| heat shock protein, ATPase subunit [Paenibacillus popilliae]
          Length = 465

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/462 (45%), Positives = 312/462 (67%), Gaps = 33/462 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++PR+IV+ELD+YI+GQ+ AKRAVA+ALRNR+RR  L   ++DE++PKNIL++GPTGVGK
Sbjct: 6   WTPRQIVTELDKYIVGQKMAKRAVAVALRNRYRRSLLDESIQDEIVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++A
Sbjct: 66  TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDKA 125

Query: 127 SINAEERILDALV-----------------------GKTATSNTREVFRKKLR------- 156
              A ERI++ L                         + A      V ++K R       
Sbjct: 126 EEMANERIVEILAPSSKENKSQRNPFEMLFGQNQSHAQQAEPEPEPVLQEKQRKVRFDLL 185

Query: 157 DGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            G + ++ I+I+V D + +I +F   PG   +G +N+ E+F  ++   R KK ++++++ 
Sbjct: 186 SGNLENETIEIDVEDAAPNILDFLSGPGNEQIG-MNMQEMFGSLI-PKRMKKRKLTIKEA 243

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L ++E+ +LIDMD V ++SI   E  GI+F+DE DKI +   G+G  VSREGVQRD+
Sbjct: 244 RKVLTQEEAAKLIDMDDVIQESIHRAEQSGIIFIDEIDKIASSGRGSGPDVSREGVQRDI 303

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS++ TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ SD  
Sbjct: 304 LPIVEGSTIITKYGPVKTDYVLFIAAGAFHIAKPSDLIPELQGRFPIRVELTSLSLSDXV 363

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +  QY EL+KTE I ++FT+++I  +A  A ++N    +IGARRLQT+ME+
Sbjct: 364 SILTEPKNAITKQYVELLKTENIQIEFTDEAIREIARTAADVNQNTENIGARRLQTIMEK 423

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF A DL      I  EYVR  + D     D+  +IL
Sbjct: 424 LLEDLSFEAPDLTLDQFRITPEYVREKLSDIAQNRDLSQYIL 465


>gi|163941567|ref|YP_001646451.1| ATP-dependent protease ATP-binding subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|229013012|ref|ZP_04170177.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides DSM 2048]
 gi|229061432|ref|ZP_04198777.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH603]
 gi|229134636|ref|ZP_04263446.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST196]
 gi|229168568|ref|ZP_04296291.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH621]
 gi|229486073|sp|A9VT67|HSLU_BACWK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163863764|gb|ABY44823.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           weihenstephanensis KBAB4]
 gi|228614974|gb|EEK72076.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH621]
 gi|228648897|gb|EEL04922.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST196]
 gi|228717855|gb|EEL69503.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH603]
 gi|228748266|gb|EEL98126.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides DSM 2048]
          Length = 463

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/468 (45%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLVENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGNQNSNQTSDAQEDDEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ I IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEVISIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSIMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 SADDFVKILIEPDNALIKQYTALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TVME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTVMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|289578439|ref|YP_003477066.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacter italicus
           Ab9]
 gi|297544715|ref|YP_003677017.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289528152|gb|ADD02504.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           italicus Ab9]
 gi|296842490|gb|ADH61006.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 459

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/458 (46%), Positives = 317/458 (69%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +   V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKNVTEK 122

Query: 126 ASINAEERILDALVGK----------------TATSN----------TREVFRKKLRDGE 159
           A   AE+R++D +VGK                +A  N           RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIVGKKKKQPKNPLEMLFNYPSAEKNEETEEDGMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV+LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A DL+ + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFKAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459


>gi|167822220|ref|ZP_02453691.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 9]
 gi|167843815|ref|ZP_02469323.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei B7210]
          Length = 444

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 419 VTIDSAYVDHALGEVSKDEDLSRYVL 444


>gi|290981275|ref|XP_002673356.1| ATP-dependent protease [Naegleria gruberi]
 gi|284086939|gb|EFC40612.1| ATP-dependent protease [Naegleria gruberi]
          Length = 505

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/448 (47%), Positives = 311/448 (69%), Gaps = 18/448 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           ++   + +P EIVS+LDR I+GQ DAKRAVA+ALRNRWRRQQL + ++DE++PKNIL+VG
Sbjct: 65  LRTKTSLTPSEIVSQLDRNIVGQADAKRAVAVALRNRWRRQQLDSSIKDEIIPKNILMVG 124

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRL++LA APFIK E TK+TE+G+ G +V+ IIRDLV+V I   ++  R 
Sbjct: 125 PTGVGKTEIARRLSKLANAPFIKTEATKYTEVGFHGSDVDSIIRDLVEVGIQHTKDRLRA 184

Query: 121 EVREQASINAEERILDALVGKTATSNTR--EVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             + +A   AE +I++ L GK   S+      +RK+LR G + DKEI++E+         
Sbjct: 185 AYKTKAREFAENKIIETLTGKKKNSDESLFNEWRKQLRSGVLDDKEIEVELPVEKPR--- 241

Query: 179 FDIPGGASVG-----ILNLSELFSKVMG-SGRK-KKIRMSVQKCYPELMRDESDRLIDMD 231
             +PG  ++       +++ +L S + G SG K KK RM +++C P+L   E D+L+  D
Sbjct: 242 -GLPGAGNMQGRMPPQVDIQDLLSPLFGGSGSKTKKRRMKIKECLPKLEESEVDKLLQTD 300

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            V +++I+ VE  GIVF+DE DKI +  +D  +    S EGVQRDLLP++EG++VSTKYG
Sbjct: 301 VVIKEAIRSVEEDGIVFIDEIDKICSSYKDRHDA---SSEGVQRDLLPIIEGTTVSTKYG 357

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           ++ TDHILFIA GAFH  +P+D+L E+QGR P+RV LK L + DF  +LT+ E+N++ Q 
Sbjct: 358 NVKTDHILFIACGAFHSVKPSDMLAELQGRLPIRVELKGLTEKDFNRVLTEPETNILRQN 417

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            EL+KTEG+ L+FT   ++ +A VA  +N+T+ +IGARRL T++E++LE+ISF+A  +  
Sbjct: 418 IELLKTEGVDLEFTPSGVNEIAKVAFEVNTTIENIGARRLITIVEKILEEISFNAPSMSG 477

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + VVI  + V+ H+G    ++D+  FIL
Sbjct: 478 QKVVITDKEVQQHVGALLKKSDLKKFIL 505


>gi|312132114|ref|YP_003999454.1| heat shock protein hslvu, atpase subunit hslu [Leadbetterella
           byssophila DSM 17132]
 gi|311908660|gb|ADQ19101.1| heat shock protein HslVU, ATPase subunit HslU [Leadbetterella
           byssophila DSM 17132]
          Length = 455

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 313/455 (68%), Gaps = 29/455 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IV+ELD+YIIGQ +AK+ VAIALRNRWRR     +++ E++P NIL++G TGVG
Sbjct: 7   NLTPGQIVAELDKYIIGQTEAKKNVAIALRNRWRRMNASPEMQAEIIPNNILMIGSTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ +IN+V+ ++++EV+ +
Sbjct: 67  KTEIARRLAKIAEAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSINMVKAAKKEEVKIK 126

Query: 126 ASINAEERILDALV-------------GKTA---TSNTREVFRKKLRDGEISDKEIDIEV 169
           A    E++IL+ L+             GK+       TRE FR+KL+ GE++ ++I+I++
Sbjct: 127 AQEAVEDKILNILIPPVTHKASEVLQDGKSEYELNQETREAFRQKLKKGELNHRKIEIDI 186

Query: 170 ADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           A TS+  +   + GG    V ++N+ E+   +M   +KK+ ++S+++    ++ +ES +L
Sbjct: 187 AQTSA--APIGVMGGPIDEVSMMNIQEMIGGLMPKNKKKR-KVSIEEAQKIMLEEESSKL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           IDMD V  ++I   EN GI+F+DE DK+ +  S  G  VSREGVQRDLLP+VEGS+V+TK
Sbjct: 244 IDMDEVKEEAIWKAENLGIIFIDEIDKVASSGSKAGPDVSREGVQRDLLPIVEGSTVNTK 303

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           +G+I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL + +F  IL   ++ L  
Sbjct: 304 HGAIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELESLTEENFLQILKAPKNALTK 363

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ +++ E I L F ED++  LA +A   N+ + +IGARRLQTVM  +L DI F   D+
Sbjct: 364 QYQAMLEAEDIQLQFEEDALKELASIAYQANTEMENIGARRLQTVMSLLLNDILF---DV 420

Query: 408 QEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+     T+ I  E VR  + +     D+  +IL
Sbjct: 421 PERIAPGTTLSIGKELVRQKLSNLIKNKDLSQYIL 455


>gi|167717564|ref|ZP_02400800.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei DM98]
 gi|167736607|ref|ZP_02409381.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 14]
 gi|167909030|ref|ZP_02496121.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 112]
 gi|167917069|ref|ZP_02504160.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei BCC215]
          Length = 444

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 419 VTIDSAYVDRALGEVSKDEDLSRYVL 444


>gi|53717845|ref|YP_106831.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei K96243]
 gi|76812254|ref|YP_331799.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei 1710b]
 gi|226199758|ref|ZP_03795309.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pakistan 9]
 gi|237810380|ref|YP_002894831.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei MSHR346]
 gi|254182215|ref|ZP_04888812.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1655]
 gi|254188141|ref|ZP_04894653.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258674|ref|ZP_04949728.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1710a]
 gi|62286777|sp|Q63YI4|HSLU_BURPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123758076|sp|Q3JXA4|HSLU_BURP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52208259|emb|CAH34190.1| ATP-dependent Hsl protease ATP-binding subunit [Burkholderia
           pseudomallei K96243]
 gi|76581707|gb|ABA51182.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1710b]
 gi|157935821|gb|EDO91491.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184212753|gb|EDU09796.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1655]
 gi|225928109|gb|EEH24145.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504043|gb|ACQ96361.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei MSHR346]
 gi|254217363|gb|EET06747.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 447

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/447 (47%), Positives = 318/447 (71%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171
           A+  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++  
Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ +
Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+
Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V ID+ YV   +G+   + D+  ++L
Sbjct: 421 SVTIDSAYVDHALGEVSKDEDLSRYVL 447


>gi|167900810|ref|ZP_02488015.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei NCTC 13177]
          Length = 447

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/447 (47%), Positives = 319/447 (71%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171
           A+  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++  
Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ +
Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290
            V   ++Q VE  GIVFLDE DKI +R+  +G G VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHESGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+
Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V ID+ YV   +G+   + D+  ++L
Sbjct: 421 SVTIDSAYVDRALGEVSKDEDLSRYVL 447


>gi|229162765|ref|ZP_04290722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus R309803]
 gi|228620647|gb|EEK77516.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus R309803]
          Length = 463

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEELRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|116515291|ref|YP_802920.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|122285313|sp|Q056X2|HSLU_BUCCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116257145|gb|ABJ90827.1| ATPase component of ATP-dependent protease [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 444

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/444 (48%), Positives = 303/444 (68%), Gaps = 16/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV EL++YIIGQ +AKRAVAIALRNRWRR QL ++LR+E+ PKNIL++GPTGVGK
Sbjct: 4   MTPRKIVKELNKYIIGQNNAKRAVAIALRNRWRRMQLNSELRNEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI ++R     + ++ A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDLAIKMIRLQIIKKNKKHA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERIL  L+            K     T ++FRKKL++G++ +KEI+I++A T   
Sbjct: 124 KKRAEERILKILIPVPKDNWNEENLKEKPEKTIQIFRKKLQEGKLDNKEIEIQIAATPIG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVH 234
           I     PG   +    L  LF  +  SG+KK +R + ++     ++ +E+ +LI+++ + 
Sbjct: 184 IEIMSPPGMEELT-NQLQSLFQNL--SGKKKNLRKLKIKDAMKIIIEEEAAKLINLEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I  VE   IVF+DE DKI     S +   VSREGVQRDLLPL+EG +VSTK+GS+ T
Sbjct: 241 EKAIYSVEQNSIVFIDEIDKICKHHSSASNSDVSREGVQRDLLPLIEGCTVSTKHGSVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  S P+DL+PE+QGR P+RV L +L   DF  ILT+  +++  QYK L+
Sbjct: 301 DHILFIASGAFQTSTPSDLIPELQGRLPIRVELNALTVDDFERILTEPNASITTQYKALI 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT+  I  +A+ +  +N ++ +IGARRL TV+E+++EDISF++++   + + 
Sbjct: 361 KTEGVDIIFTKKGIRKIAEASWKINESMENIGARRLYTVLEKLMEDISFNSNEKFGQKIY 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID +YV LH+       D+  FIL
Sbjct: 421 IDEKYVNLHLDKLIENEDLSRFIL 444


>gi|218898982|ref|YP_002447393.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus G9842]
 gi|226704516|sp|B7IUI8|HSLU_BACC2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218545017|gb|ACK97411.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus G9842]
          Length = 463

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152
           +++A   A +R+++ LV                       + TS+T         R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLASIAKNKDVSQFIL 463


>gi|53724452|ref|YP_104727.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei ATCC 23344]
 gi|121600281|ref|YP_994209.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei SAVP1]
 gi|124386545|ref|YP_001028138.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei NCTC 10229]
 gi|126439830|ref|YP_001057243.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei 668]
 gi|126448941|ref|YP_001082949.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei NCTC 10247]
 gi|126452107|ref|YP_001064483.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 1106a]
 gi|134284096|ref|ZP_01770790.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 305]
 gi|167001361|ref|ZP_02267160.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           PRL-20]
 gi|167813705|ref|ZP_02445385.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 91]
 gi|167892313|ref|ZP_02479715.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 7894]
 gi|217424936|ref|ZP_03456432.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 576]
 gi|238563255|ref|ZP_00439195.2| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242315412|ref|ZP_04814428.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254174829|ref|ZP_04881490.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 10399]
 gi|254197069|ref|ZP_04903493.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei S13]
 gi|254201827|ref|ZP_04908191.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           FMH]
 gi|254207156|ref|ZP_04913507.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           JHU]
 gi|254295746|ref|ZP_04963203.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 406e]
 gi|254359662|ref|ZP_04975933.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           2002721280]
 gi|62286769|sp|Q62F00|HSLU_BURMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221466|sp|A3MRR3|HSLU_BURM7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221467|sp|A2S869|HSLU_BURM9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221468|sp|A1V7K6|HSLU_BURMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221469|sp|A3NQ62|HSLU_BURP0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221470|sp|A3N4H2|HSLU_BURP6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52427875|gb|AAU48468.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 23344]
 gi|121229091|gb|ABM51609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           SAVP1]
 gi|124294565|gb|ABN03834.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           NCTC 10229]
 gi|126219323|gb|ABN82829.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 668]
 gi|126225749|gb|ABN89289.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1106a]
 gi|126241811|gb|ABO04904.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           NCTC 10247]
 gi|134244548|gb|EBA44652.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 305]
 gi|147747721|gb|EDK54797.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           FMH]
 gi|147752698|gb|EDK59764.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           JHU]
 gi|148028876|gb|EDK86808.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           2002721280]
 gi|157805718|gb|EDO82888.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 406e]
 gi|160695874|gb|EDP85844.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 10399]
 gi|169653812|gb|EDS86505.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei S13]
 gi|217391956|gb|EEC31982.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 576]
 gi|238521088|gb|EEP84542.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242138651|gb|EES25053.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1106b]
 gi|243062873|gb|EES45059.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           PRL-20]
          Length = 447

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/447 (47%), Positives = 318/447 (71%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +
Sbjct: 63  KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122

Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171
           A+  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++  
Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ +
Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+
Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V ID+ YV   +G+   + D+  ++L
Sbjct: 421 SVTIDSAYVDRALGEVSKDEDLSRYVL 447


>gi|229019024|ref|ZP_04175865.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1273]
 gi|228742264|gb|EEL92423.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1273]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|229031459|ref|ZP_04187459.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1271]
 gi|229174495|ref|ZP_04302027.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus MM3]
 gi|228609055|gb|EEK66345.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus MM3]
 gi|228729748|gb|EEL80728.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1271]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|225865810|ref|YP_002751188.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus
           03BB102]
 gi|228986972|ref|ZP_04147098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|254802296|sp|C1EP53|HSLU_BACC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225789631|gb|ACO29848.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus
           03BB102]
 gi|228772750|gb|EEM21190.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|228902332|ref|ZP_04066489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 4222]
 gi|228857301|gb|EEN01804.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 4222]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152
           +++A   A +R+++ LV                       + TS+T         R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|313673477|ref|YP_004051588.1| heat shock protein hslvu, atpase subunit hslu [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940233|gb|ADR19425.1| heat shock protein HslVU, ATPase subunit HslU [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 440

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/440 (46%), Positives = 310/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV+ELD+YIIGQ  AK+AVAIALRNRWRR QLP + RD++ PKNILL+GPTGVG
Sbjct: 3   HLTPKQIVAELDKYIIGQSLAKKAVAIALRNRWRRLQLPQEKRDDITPKNILLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  +PFIKVE +KFTE+G+VGR+VE IIRDLV++AI+  +   R++V ++
Sbjct: 63  KTEIARRLAKITESPFIKVEASKFTEVGFVGRDVESIIRDLVEIAISEEKVRMREQVLDE 122

Query: 126 ASINAEERILDAL-------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AE+ +LD L       V + + + ++E FRK L  G++ D+ ++I++ ++   I  
Sbjct: 123 ARKKAEDILLDRLLPVPTGYVDQNSIAESKEKFRKMLHQGKLDDRNVEIDIEESHPQIEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               G   +   NL ++F  +   G+KK+  M V+  + +L + E++R++DM+ V R+++
Sbjct: 183 LTNAGIDEIS-SNLQDIFKNIF-PGQKKRRLMKVKDAFIQLEQQEANRMLDMEKVKRNAL 240

Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
             VE+ GIVF+DE DKI +R+    G  VSREGVQRDLLP++EGS++ TKYG + TDHIL
Sbjct: 241 YKVEHSGIVFIDEIDKICSREGYTKGGDVSREGVQRDLLPIIEGSTIMTKYGMVKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FI +GAFH+++P+DL+PE+QGRFP+RV L SL K DF  IL + E+ L  QY++L+  + 
Sbjct: 301 FIGAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFIKILKEPENALTKQYRDLLMADE 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++FT D I+ +A++A  LN T  +IGARRL T++E+VLEDIS+ A       +VID+ 
Sbjct: 361 VEIEFTNDGIEKIAEIATELNKTNENIGARRLHTIIEKVLEDISYEAPFGHFAKIVIDSI 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V   +    ++ D+  +IL
Sbjct: 421 FVESKLKTILAKQDLSKYIL 440


>gi|229098298|ref|ZP_04229245.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-29]
 gi|229104391|ref|ZP_04235060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-28]
 gi|228679089|gb|EEL33297.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-28]
 gi|228685196|gb|EEL39127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-29]
          Length = 463

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|294867279|ref|XP_002765040.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|294893396|ref|XP_002774451.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239864920|gb|EEQ97757.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239879844|gb|EER06267.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 488

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/439 (48%), Positives = 300/439 (68%), Gaps = 7/439 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE+V  LDRY+IGQ DAKRAVA ALRNRWRRQQL  +LR E+MP+N+L+VGPTGVG
Sbjct: 50  NMKPREMVEYLDRYVIGQADAKRAVANALRNRWRRQQLDEELRAEIMPRNMLMVGPTGVG 109

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+G+ GR+V+ IIRDL+++A+   R    DE+R +
Sbjct: 110 KTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVDSIIRDLLEMAMTRQRSRLEDELRPK 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AEE+IL+AL+G  +  + ++ +   LR   + D+++ +EV  T +D+    + GG+
Sbjct: 170 ATEAAEEQILNALIGPMSAQSDKDTWLAHLRAKLLDDRQVKVEVPVTDNDLYPEWVGGGS 229

Query: 186 -SVGILNLSELFSKVMGSGRKKKIR---MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            S     +  +   V G G  +++    M+V +   +L++   DR+ID D +   +I+  
Sbjct: 230 DSRKPPQIRVIQVPVAGGGTSRQMEKRTMTVAEARQKLVQVHLDRMIDSDMILASAIRST 289

Query: 242 ENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           E  GIVF+DE DKI     G  +G   S EGVQRDLLP++EGS VSTK+G++NTDHILFI
Sbjct: 290 EQEGIVFVDEIDKICNSSKGFYHGSDASSEGVQRDLLPILEGSDVSTKHGNVNTDHILFI 349

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH  +P D+L E+QGR PVRV L +L + DF  ILT+   NLI Q+K L++TEGI 
Sbjct: 350 CSGAFHSVKPGDMLAELQGRLPVRVTLSALTEHDFVRILTEPHHNLIEQHKALLRTEGIT 409

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+F ED I  +A +A +LN+ V +IGARRL TVME+++E++SF A  + +  TV +DA  
Sbjct: 410 LEFPEDGIKEIAHIAFDLNTHVENIGARRLHTVMEKIMEEVSFDAPTMGDGTTVTVDANM 469

Query: 419 VRLHIGDFPSETDMYHFIL 437
           VR  +    S+ D++ FIL
Sbjct: 470 VRTKLKPLLSKGDLHKFIL 488


>gi|167040335|ref|YP_001663320.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter
           sp. X514]
 gi|300914419|ref|ZP_07131735.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X561]
 gi|307724345|ref|YP_003904096.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X513]
 gi|259491382|sp|B0K1T6|HSLU_THEPX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166854575|gb|ABY92984.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X514]
 gi|300889354|gb|EFK84500.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X561]
 gi|307581406|gb|ADN54805.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X513]
          Length = 459

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/458 (45%), Positives = 316/458 (68%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGK--------------------------TATSNTREVFRKKLRDGE 159
           A   AE+R++D +VGK                           +    RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIVGKRKKQAKNPFEMLFNYPAAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMMEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVSLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF+A DL+ + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFNAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459


>gi|294507661|ref|YP_003571719.1| Heat shock protein HslU [Salinibacter ruber M8]
 gi|294343989|emb|CBH24767.1| Heat shock protein HslU [Salinibacter ruber M8]
          Length = 481

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/476 (47%), Positives = 323/476 (67%), Gaps = 48/476 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ  P D+RDE++P NI+++GPTGVG
Sbjct: 10  DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V +  R+EV+++
Sbjct: 70  KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129

Query: 126 ASINAEERILDALV----------GKTAT-----------------------SNTREVFR 152
           A   AEERILD L+          G  A+                       + TRE FR
Sbjct: 130 ARELAEERILDILIPPDDDTQSRAGDGASDEPGVTVSDTDDAEAEGEQTSLRARTREKFR 189

Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            KL  G++ D+EI+IEV +D+ S +  F   G   +G+ NL ELF  + G  ++K  R++
Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGV-NLEELFGNLGGGQKRKTRRVT 248

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA----RD-SGNGIGV 266
           V++    L ++E+ +LIDMD V  D+++ V+  GIVF+DE DK+ +    RD  G G GV
Sbjct: 249 VEEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGV 308

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SR+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L
Sbjct: 309 SRQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVEL 368

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            +L++ DF  ILT  ++ L+ QY+ L ++E + ++F ++ +  LA +A  +N+ V +IGA
Sbjct: 369 NNLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGA 428

Query: 387 RRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL TV+  +LED+ F   D+ E+      + IDA+ VR  +    S  D+  +IL
Sbjct: 429 RRLHTVLTTLLEDLLF---DVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481


>gi|83816415|ref|YP_445764.1| ATP-dependent protease ATP-binding subunit [Salinibacter ruber DSM
           13855]
 gi|83757809|gb|ABC45922.1| heat shock protein HslVU, ATPase subunit HslU [Salinibacter ruber
           DSM 13855]
          Length = 481

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/476 (47%), Positives = 323/476 (67%), Gaps = 48/476 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ  P D+RDE++P NI+++GPTGVG
Sbjct: 10  DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V +  R+EV+++
Sbjct: 70  KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129

Query: 126 ASINAEERILDALV----------GKTAT-----------------------SNTREVFR 152
           A   AEERILD L+          G  A+                       + TRE FR
Sbjct: 130 ARELAEERILDILIPPDDDTQSQAGDGASDEPGFTVSDTDDAEAEGEQTSLRARTREKFR 189

Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            KL  G++ D+EI+IEV +D+ S +  F   G   +G+ NL ELF  + G  ++K  R++
Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGV-NLEELFGNLGGGQKRKTRRVT 248

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA----RD-SGNGIGV 266
           V++    L ++E+ +LIDMD V  D+++ V+  GIVF+DE DK+ +    RD  G G GV
Sbjct: 249 VEEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGV 308

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SR+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L
Sbjct: 309 SRQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVEL 368

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            +L++ DF  ILT  ++ L+ QY+ L ++E + ++F ++ +  LA +A  +N+ V +IGA
Sbjct: 369 NNLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGA 428

Query: 387 RRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL TV+  +LED+ F   D+ E+      + IDA+ VR  +    S  D+  +IL
Sbjct: 429 RRLHTVLTTLLEDLLF---DVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481


>gi|301055319|ref|YP_003793530.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI]
 gi|300377488|gb|ADK06392.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 463

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGIQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|206978534|ref|ZP_03239384.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus H3081.97]
 gi|217961249|ref|YP_002339817.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus
           AH187]
 gi|222097274|ref|YP_002531331.1| ATP-dependent protease ATP-binding subunit hslu [Bacillus cereus
           Q1]
 gi|226704518|sp|B7HLG2|HSLU_BACC7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802297|sp|B9IVB8|HSLU_BACCQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206743257|gb|EDZ54714.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus H3081.97]
 gi|217067560|gb|ACJ81810.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH187]
 gi|221241332|gb|ACM14042.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus cereus Q1]
 gi|324327726|gb|ADY22986.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|47570330|ref|ZP_00240975.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus
           G9241]
 gi|47552995|gb|EAL11401.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus
           G9241]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E     V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVNV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|253573514|ref|ZP_04850857.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847042|gb|EES75047.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 467

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/465 (45%), Positives = 315/465 (67%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IV+ELD+YI+GQ+ AK++VA+ALRNR+RR  LP +++DE++PKNIL++GPTGVG
Sbjct: 5   NLTPRQIVAELDKYIVGQKQAKKSVAVALRNRYRRSLLPEEVQDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDL++ AI  V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLIETAIRTVKLERTEKVKDK 124

Query: 126 ASINAEERILDALV-----------------GKTATSNT---------------REVFRK 153
           A   A ER++  LV                 G    +NT               R   R 
Sbjct: 125 AEGLANERLVQILVPSENKTKGVRNPFEMLFGGGNGANTSAQEEPEEDSTLAERRRQVRF 184

Query: 154 KLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KL  G++ +  +++EV D T + +  F   G   +G +N+ E+F  ++   R KK +++V
Sbjct: 185 KLLSGQMENDIVEVEVEDNTPTMMDMFAGQGNDQLG-MNMQEMFGNLL-PKRTKKRKLTV 242

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E+ +LID D + +++I   E  GI+F+DE DK+ +R  G+G  VSREGVQ
Sbjct: 243 KEARKVLTQEEAAKLIDQDDLIQEAITRAEQSGIIFIDEIDKVASRGQGSGPDVSREGVQ 302

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG I TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL   
Sbjct: 303 RDILPIVEGSTVMTKYGPIKTDYILFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTLE 362

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ E+ L  QY EL++TE + ++F++ +I  +A +A  +N+   +IGARRL T+
Sbjct: 363 DFVSILTEPENALTKQYIELLRTEDLEIEFSDAAIHEIARIAAMVNANTENIGARRLHTI 422

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    +VI  EYVR  +G+   + D+  FIL
Sbjct: 423 LEKLLEDLSFEAPELTLDKMVITPEYVREKLGNIAQDRDLSQFIL 467


>gi|65321156|ref|ZP_00394115.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Bacillus anthracis str. A2012]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+   IL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQIIL 463


>gi|193212784|ref|YP_001998737.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobaculum
           parvum NCIB 8327]
 gi|193086261|gb|ACF11537.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobaculum parvum
           NCIB 8327]
          Length = 490

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/475 (46%), Positives = 315/475 (66%), Gaps = 46/475 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV +LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 19  QLTPSQIVEQLDKYIIGQKDAKKSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL + A+ +VR  + +EVRE+
Sbjct: 79  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLAEQAVAMVRSEKSEEVREK 138

Query: 126 ASINAEERILDALV---------------------GKTATSNTR----EVFRK------- 153
           A++  EER+LD L+                     G   T + R    E+ RK       
Sbjct: 139 AALLVEERLLDILLPPVSGIEEQESEGDEEGLVVSGDEVTGDERNLEREINRKSREKMLE 198

Query: 154 KLRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRM 210
           +LR G + D++I+IE++ D    +     P G    + +L  +   +M     +KKK R+
Sbjct: 199 RLRSGRMEDRQIEIEISSDGQGGMMQIFGPLGQ---MEDLGGIMQDLMSGMPKKKKKRRL 255

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVS 267
           ++ +    L ++E  +LIDMD V +++++  E  GIVF+DE DKI A  +G    G  VS
Sbjct: 256 TIAEARKLLEQEEVQKLIDMDVVVKEALRKAEESGIVFIDEIDKIAAPTTGAGGKGPDVS 315

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRDLLP+VEGS+VSTK+G + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LK
Sbjct: 316 REGVQRDLLPIVEGSAVSTKHGIVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELK 375

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL + DF LILT   + LI QY+ ++ TE I L+FTED+I  +A  A  +N TV +IGAR
Sbjct: 376 SLTEEDFFLILTQPRNALIKQYRAMLLTEEIDLEFTEDAIREIARTAAKVNETVENIGAR 435

Query: 388 RLQTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++  +LE++ F   ++      +K VVIDAE VR  +G   ++ D+  +IL
Sbjct: 436 RLHTILTNLLEELMFGIPEMVKDGSIDKHVVIDAEKVREKLGKIAADRDLSQYIL 490


>gi|194333990|ref|YP_002015850.1| ATP-dependent protease ATP-binding subunit HslU [Prosthecochloris
           aestuarii DSM 271]
 gi|194311808|gb|ACF46203.1| heat shock protein HslVU, ATPase subunit HslU [Prosthecochloris
           aestuarii DSM 271]
          Length = 487

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/463 (47%), Positives = 313/463 (67%), Gaps = 30/463 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + +P +IV  LD+YIIGQ +AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTG
Sbjct: 26  TESLTPSQIVDTLDKYIIGQHEAKKSVAIALRNRLRRQSVGEELRDEIMPNNIIMIGPTG 85

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL D A+N+VR  + +EVR
Sbjct: 86  VGKTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVNMVRHEKSEEVR 145

Query: 124 EQASINAEERILDALVGKTATSN------------------------TREVFRKKLRDGE 159
           E+A+   EER+LD L+     S+                        +RE   ++LR G 
Sbjct: 146 EKAAALVEERLLDILLPSVPASSGEDRLSDETANGEALSMEEELNRKSREKMLERLRSGR 205

Query: 160 ISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           + +++I++E++ D++  +     P G    I  + +     +   RKK+ R+++ +    
Sbjct: 206 MDERQIEMEISGDSNGGMMQIFGPLGQMEEIGGMMQDLMNGLPKKRKKR-RVTIAEARKL 264

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDL 275
           L ++E  +LIDMD+V +++++ VE  GIVF+DE DKI A  SG+G     VSREGVQRDL
Sbjct: 265 LEQEEVQKLIDMDSVVKEAVRKVEESGIVFIDEIDKIAAPTSGSGGKGPDVSREGVQRDL 324

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF 
Sbjct: 325 LPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEDDFY 384

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT  ++ LI QYK LM TEG+ L+FT+DSI  +A  A  +N +V +IGARRL T+M  
Sbjct: 385 RILTQPKNALIKQYKALMATEGVDLEFTDDSIREIARTAARVNESVENIGARRLHTIMTN 444

Query: 396 VLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++ F+  D   +  VVID   V   +    S+ D+  +IL
Sbjct: 445 LLEELMFNIPDKHTDGNVVIDEAVVCGKMDRLVSDRDLSSYIL 487


>gi|222099123|ref|YP_002533691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga
           neapolitana DSM 4359]
 gi|254802319|sp|B9KBC9|HSLU_THENN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221571513|gb|ACM22325.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga
           neapolitana DSM 4359]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/465 (48%), Positives = 315/465 (67%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVRELDKYIVGQTEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKMK 120

Query: 121 EVREQASINAEERILDALVGKT---------------------ATSNTREVFRKKLRDGE 159
           EV E+A    EERILDALV ++                      T   R  FR K  +  
Sbjct: 121 EVEERAKELVEERILDALVPESRAVPAITNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 160 ISDKEIDIEVAD-------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  ++E  +       T+S       PG   +GI  +S +FS ++   RKKK +M V
Sbjct: 181 ERLRRGELEDEEIEVEIEETASPFMGIFGPGMEDLGI-EISNMFSGML-PKRKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S +G  VSR+GVQ
Sbjct: 239 SEARKVLLPMEAEKLIDMDKVIQEALDRAQNRGIIFIDEIDKIAGKESASGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VVIDAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKKVVIDAEYVRKRLERIVQDEDLSAYIL 463


>gi|297584030|ref|YP_003699810.1| heat shock protein HslVU ATPase subunit HslU [Bacillus
           selenitireducens MLS10]
 gi|297142487|gb|ADH99244.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           selenitireducens MLS10]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/466 (46%), Positives = 314/466 (67%), Gaps = 34/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PREIV  LD+ IIGQ  AKR+VA+ALRNR+RR  L  ++RDE+ PKNIL++GPT
Sbjct: 1   MSQTLTPREIVERLDQSIIGQSSAKRSVAVALRNRYRRSLLEENVRDEISPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+V+I +V++ +  +V
Sbjct: 61  GVGKTEIARRLAKLTGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVSIRMVKQEKTVKV 120

Query: 123 REQASINAEERILDALV----GKTATSNTREVFRK------------------------- 153
           R+ A   A +RI+  LV     +++  N  E+  +                         
Sbjct: 121 RDLAEKQANQRIIGLLVPTAKKESSYRNPLEMLFQNGEDDEEPEPEPEEHESVRERRRRI 180

Query: 154 --KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L DGE+ ++E+ IEV +  + + +  IPG   +G +N+ ++F   M   +KKK ++ 
Sbjct: 181 TRQLEDGELEEREVTIEVEEQQNQMMDM-IPGMEQMG-MNMQDMFGG-MFPKKKKKRKLP 237

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LIDM+ V  ++I   E  GI+F+DE DK+ ++  G    VSREGV
Sbjct: 238 VREARKVLAEDEAQKLIDMEEVKIEAISRAEQLGIIFVDEMDKVASKSGGQSADVSREGV 297

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TKYGS+ TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L SLN 
Sbjct: 298 QRDILPVVEGSTVATKYGSVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELDSLNV 357

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + +  LI QY+ ++  EGI L FTED+I  +A++A ++N    +IGARRL T
Sbjct: 358 EDFVRILVEPKHALIKQYQAMIDIEGIELTFTEDAIREIAEIAYDVNEQTENIGARRLHT 417

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF AS++  +T+ I  EYVR  + +   + D+  FIL
Sbjct: 418 ILEKLLEDLSFEASEITMETISITPEYVREKLQNIVEDRDLSRFIL 463


>gi|322382308|ref|ZP_08056215.1| ATP-dependent protease ATP-binding subunit HslU-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153661|gb|EFX46036.1| ATP-dependent protease ATP-binding subunit HslU-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 503

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/460 (43%), Positives = 313/460 (68%), Gaps = 30/460 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDRYI+GQ++AK++VA+ALRNR+RR  L   ++DE++PKNIL++GPTGVGK
Sbjct: 45  LTPREIVKELDRYIVGQKEAKKSVAVALRNRYRRSLLDESMKDEIVPKNILMIGPTGVGK 104

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I +V+  + ++++++A
Sbjct: 105 TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMVKAEKTEKLKDRA 164

Query: 127 SINAEERILDALVGKTATS----NTREVF-------------------------RKKLRD 157
              A +R++  LV    +S    N  E+F                         ++KL  
Sbjct: 165 EQLANDRLVSILVPSPKSSKGQRNPLEMFFSSQQHQEEDEEKKDSGLAERRLEMKEKLLR 224

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ D  +++EV D +  + +     G     +N+ E+F  +M   R K+ +++V++   
Sbjct: 225 GELEDTMVEVEVEDNAPSMLDMLAGQGNEQMGMNMQEMFGNLMPK-RTKRRKLTVKEARK 283

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E+ +L+DMD V ++SI+  E  GI+F+DE DKI +   GNG  VSREGVQRD+LP
Sbjct: 284 ILTHEEAQKLMDMDEVVQESIERAEQSGIIFIDEIDKIASTGRGNGPDVSREGVQRDILP 343

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS++ TKYG + TD+ILF+A+GAFH+++P+DL+PE+QGRFP+RV L +L   DF LI
Sbjct: 344 IVEGSTIMTKYGPVKTDYILFVAAGAFHIAKPSDLIPELQGRFPIRVELNNLTLDDFVLI 403

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ L  QY  L++TEGI ++F++ +I+ +A +AV +N +  +IGARRL T++E++L
Sbjct: 404 LKEPKNALTKQYVALLETEGITVEFSQKAIEEIARIAVEVNQSTENIGARRLHTILEKLL 463

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A +L  +T++I  EYVR  + +     D+  +IL
Sbjct: 464 EDLSFEAPELTLETMLITPEYVREKLSNIVENRDLSQYIL 503


>gi|255038554|ref|YP_003089175.1| ATP-dependent protease ATP-binding subunit HslU [Dyadobacter
           fermentans DSM 18053]
 gi|254951310|gb|ACT96010.1| heat shock protein HslVU, ATPase subunit HslU [Dyadobacter
           fermentans DSM 18053]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/459 (47%), Positives = 305/459 (66%), Gaps = 31/459 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV ELD+YIIGQ DAKR VAIALRNRWRR   P D++ E++P NIL++G TGVGK
Sbjct: 8   LTPRQIVFELDQYIIGQNDAKRNVAIALRNRWRRMNSPEDIQREIIPNNILMIGATGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VR  +++EV+ +A
Sbjct: 68  TEIARRLAKIADAPFVKVEASKFTEVGYVGRDVESMVRDLVEQAVGMVRTQKKEEVKIKA 127

Query: 127 SINAEERILDALVGKTATSN-----------------------TREVFRKKLRDGEISDK 163
               E+ ILDAL+     S                        TRE FR+K+R+GE+  +
Sbjct: 128 EQAVEDIILDALIPPVHGSGGTRPLPDNGSEEMPQSDAELNQRTRERFREKIRNGELDSR 187

Query: 164 EIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +I+IEV    + + N  + GGA   V ++N+ E+   +M   R KK +++V++    L+ 
Sbjct: 188 KIEIEV--QQNQMPNVGMIGGAVDDVSMMNIQEMIGNMMPR-RGKKRKVTVEEARKLLLD 244

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVE 280
           +E+ +LIDMD V  ++I+  EN GI+F+DE DK+ + R  G+G  VSREGVQRDLLP+VE
Sbjct: 245 EEASKLIDMDEVKLEAIKKAENLGIIFIDEIDKVASSRSGGSGPDVSREGVQRDLLPIVE 304

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GSSV+TK+G I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF  IL  
Sbjct: 305 GSSVNTKHGVIQTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEGDFYQILKA 364

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY  +M+ EG+ LDF + ++  +A +A  +NS V +IGARRLQTVM  +L D 
Sbjct: 365 PKNALTKQYGAMMEAEGVELDFEDGALREIARIAFEVNSEVENIGARRLQTVMSSLLNDF 424

Query: 401 SFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F   D+      + I AE V   +       D+  +IL
Sbjct: 425 MFDIPDMIGDGSQITITAEMVEQKLSALVKNRDLSQYIL 463


>gi|228940917|ref|ZP_04103476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973846|ref|ZP_04134422.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228785871|gb|EEM33874.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818753|gb|EEM64819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 463

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152
           +++A   A +R+++ LV                       + TS+T         R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + ++ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|323453275|gb|EGB09147.1| hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens]
          Length = 491

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 13/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR IV ELD++I+GQ  AKRAVAIALRNRWRRQ L  +L+ E++PKNIL++GPTG G
Sbjct: 53  TMTPRAIVDELDKHIVGQSAAKRAVAIALRNRWRRQLLGEELKAEIVPKNILMIGPTGCG 112

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++LA APFIKVE TKFTE+G+ GR+V+QIIRDLV+ +I + R+ + ++ RE+
Sbjct: 113 KTEIARRLSKLAQAPFIKVEATKFTEVGFHGRDVDQIIRDLVEASITLTRKKKAEQFREE 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A    E RILD L G  A   T+  FR+ LR G + D++ID+   D  +       PGG 
Sbjct: 173 ARRLVEGRILDTLTGLNAAQATQSSFREMLRKGVLDDRQIDV---DLPAAQPGAQPPGGV 229

Query: 186 -------SVGILNLSELFSKV--MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                   + I +    F+ +   G GR ++ RMS+++  P +   E D+L++   +H++
Sbjct: 230 IQLDQNNPISINDFLGRFNALAQQGKGRSERKRMSIREARPLIEEQELDKLLEGVDIHKE 289

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++  VE  GIVF+DE DKIV      G   S EGVQRDLLPL+EGS++STKYG+++TD+I
Sbjct: 290 AVAAVEESGIVFIDEIDKIVNASDYRGADASAEGVQRDLLPLIEGSTISTKYGNVDTDYI 349

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH ++P+DLL E+QGR P+RV L +L ++D   ILT+ E+NLI Q + L+ TE
Sbjct: 350 LFIASGAFHQAKPSDLLAELQGRLPIRVELDALTEADMHRILTEPETNLIAQQRALLATE 409

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-ID 415
            ++L+FT+ +I  +A VA   N T+ +IGARRL T +ER+++DISF+A D +   +V +D
Sbjct: 410 NVMLEFTDCAIREIARVASLANRTIENIGARRLHTCIERIIDDISFNACDYKPGDLVTVD 469

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   + D   ++D+  +IL
Sbjct: 470 KAYVEGKVDDLLIQSDLSKYIL 491


>gi|168703139|ref|ZP_02735416.1| heat shock protein HslVU, ATPase subunit HslU [Gemmata
           obscuriglobus UQM 2246]
          Length = 444

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/446 (49%), Positives = 307/446 (68%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELD+YI+GQ  AK+AVA+A+RNRWRRQQL A+LR ++ PKNI+L+GPTGVGK
Sbjct: 1   MTPRQIVAELDKYIVGQAAAKKAVAVAIRNRWRRQQLSAELRQDVTPKNIILIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIRDL +  I +V++  R +VRE+A
Sbjct: 61  TEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRDLTEAGIGLVKQEMRVKVREKA 120

Query: 127 SINAEERILDALVG---KTA------------TSNTREVFRKKLRDGEISDKEIDIEVAD 171
                ER+LD +V    +TA               TRE FR KL  GE+ D  +++ V  
Sbjct: 121 QEKVTERLLDLVVPLPKRTAWEPEQEKEDEERRRRTREKFRAKLEAGELEDHVVELTVEQ 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            ++ +  F   G  ++ + +L  +F K+M    + + ++ V+     L+  E++ LID  
Sbjct: 181 KATPVQIFSNLGMENMDV-DLQGMFDKMMPKNAQPR-QLPVRDARKVLLEQETESLIDRA 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   +I+ VEN+GIVFLDE DK+    +G G  VSR+GVQRDLLP+VEG++V+TK+G +
Sbjct: 239 AVVEQAIERVENHGIVFLDEIDKVCGPSNGQGPDVSRQGVQRDLLPVVEGTTVNTKHGPV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFHVS+PADL+PE+QGRFP+RV L  L K DF  +LT+ +  L  QY E
Sbjct: 299 KTDHILFIAAGAFHVSKPADLMPELQGRFPIRVELTDLTKPDFLRVLTEPKHALPKQYAE 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TEG+ L+FT D ++ALAD+A ++N    +IGARRL TV+E+V+E++SF   DL  K 
Sbjct: 359 LLRTEGVELEFTTDGLEALADIAFDVNRANQNIGARRLHTVIEKVVEEVSFEGPDLDNKR 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VVID  +VR  +G      D+  +IL
Sbjct: 419 VVIDGPFVRSKLGPVIQREDLSKYIL 444


>gi|218234543|ref|YP_002368630.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus
           B4264]
 gi|228922583|ref|ZP_04085883.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960045|ref|ZP_04121709.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047515|ref|ZP_04193105.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH676]
 gi|229111300|ref|ZP_04240853.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-15]
 gi|229129105|ref|ZP_04258078.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-Cer4]
 gi|229146400|ref|ZP_04274771.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST24]
 gi|229152028|ref|ZP_04280223.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus m1550]
 gi|296504324|ref|YP_003666024.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           BMB171]
 gi|226704517|sp|B7HDV2|HSLU_BACC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218162500|gb|ACK62492.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus B4264]
 gi|228631377|gb|EEK88011.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus m1550]
 gi|228637033|gb|EEK93492.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST24]
 gi|228654342|gb|EEL10207.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-Cer4]
 gi|228672076|gb|EEL27367.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-15]
 gi|228723762|gb|EEL75117.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH676]
 gi|228799561|gb|EEM46514.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228837012|gb|EEM82353.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296325376|gb|ADH08304.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           BMB171]
          Length = 463

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + ++ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|302779676|ref|XP_002971613.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii]
 gi|300160745|gb|EFJ27362.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii]
          Length = 444

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/440 (47%), Positives = 309/440 (70%), Gaps = 16/440 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQ  AKRAVA+A RNRWRR ++P +LRDE++PKNIL++GPTG GK
Sbjct: 12  LTPAKVVEVLDRYIVGQTAAKRAVAVAFRNRWRRHRIPVELRDEIVPKNILMIGPTGCGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 72  TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 131

Query: 127 SINAEERILDALVG--------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             + E+RILD LVG        K+ TS   ++FRK  R+G I +++I ++V +    +  
Sbjct: 132 EKSVEDRILDVLVGVQQEEISEKSLTS--MDMFRKLYREGAIDNRKIQLDVPEGRVRLP- 188

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            D+ G      L +++L  KV+ S + ++  ++V +  P L   E ++ +  D + +D+I
Sbjct: 189 VDVMGNG----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAI 244

Query: 239 QMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           Q+ E+ GIVF+DE DKIV   ++  G   S EGVQRDLLP++EGS V+TKYG++NTDHIL
Sbjct: 245 QLTESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHIL 304

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FI SGAFH  +P+D+L E+QGR P+RV LK+L + D   ILT+ E N++ Q + L+KTEG
Sbjct: 305 FICSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLKTEG 364

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L FTED++  LA+VA  +N ++ +IGARRL TV+ERV+EDISFSA +   + ++ID E
Sbjct: 365 VELIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKE 424

Query: 418 YVRLHIGDFPSETDMYHFIL 437
            VR  +GD  ++ D+  F+L
Sbjct: 425 KVRKSVGDLLNKMDLSKFVL 444


>gi|319649572|ref|ZP_08003728.1| ATP-dependent protease ATP-binding subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317398734|gb|EFV79416.1| ATP-dependent protease ATP-binding subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 467

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/465 (45%), Positives = 310/465 (66%), Gaps = 36/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IV  LD++IIGQ+DAK+AVA+ALRNR+RR  L   LRDE+ PKNIL++GPTGVG
Sbjct: 6   NLTPRQIVERLDQFIIGQKDAKKAVAVALRNRYRRSLLEEKLRDEVNPKNILMIGPTGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +   V+E+
Sbjct: 66  KTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMASVKER 125

Query: 126 ASINAEERILDALV-GKTATSN-----------------------------TREVFRKKL 155
           A  +A  RIL+ LV G    +N                              R++ ++KL
Sbjct: 126 AEESANRRILELLVPGAKKAANYKNPLEMLFGGGNDQQQDTYQTEDLNLQEKRKIVKEKL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ ++ I +EV +     S FD+  G+ +    +N+ +  S +M   RKK+ +++V+
Sbjct: 186 ALGELENEVITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLMPKKRKKR-KLTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI +++SG     VSREGVQ
Sbjct: 243 EARKILTNEEAQKLIDMDEVGQEAVFRAEQSGIIFIDEIDKIASKNSGGSSADVSREGVQ 302

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   
Sbjct: 303 RDILPVVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLTVE 362

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY+ L+ TEGI ++F++D+I  +A  A  +N    +IGARRL T+
Sbjct: 363 DFYKILVEPDNALIKQYEALLVTEGIQIEFSDDAIRRIAQFAFEVNQNTDNIGARRLHTI 422

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 423 MEKLLEDLSFEAPDVTMEKITITPQYVEEKLGAISRNKDLSQFIL 467


>gi|229157405|ref|ZP_04285483.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 4342]
 gi|228626132|gb|EEK82881.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 4342]
          Length = 463

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G     N              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNPNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|30021917|ref|NP_833548.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           14579]
 gi|62286870|sp|Q819X7|HSLU_BACCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|29897473|gb|AAP10749.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 14579]
          Length = 463

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + ++ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 237 LSVKEARKLLSNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|313901988|ref|ZP_07835404.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467777|gb|EFR63275.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           subterraneus DSM 13965]
          Length = 480

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/468 (47%), Positives = 313/468 (66%), Gaps = 40/468 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LRDE+ PKNIL++GPTGVGK
Sbjct: 16  LTPRQIVAELDRYIVGQAEAKRAVAIALRNRWRRQQLPPHLRDEVAPKNILMIGPTGVGK 75

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDL++ AI +V+  R   V ++A
Sbjct: 76  TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLLETAIRMVKAERVAAVEDRA 135

Query: 127 SINAEERILDALVGKTATSNT-----------------------------------REVF 151
              A++R+LD LV                                           R+  
Sbjct: 136 RAAADDRLLDVLVPPPRRRPQRAGSPWEMLLGSLGAGMPGPAEPARPEEEEDWRRHRQEA 195

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG--ILNLSELFSKVMGSGRKKKIR 209
             +LR G++ D+ ++IEV D +  +   DI GG  +    LN+ +L  K     RK++ R
Sbjct: 196 AARLRSGQLEDQVVEIEVEDQAPPM--VDILGGPGLEEVTLNVQDLL-KDWLPRRKRRRR 252

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V++    L ++E+ +LIDMD V  ++I+  E  GIVF+DE DKI  R+ G+G  VSRE
Sbjct: 253 LPVREAREVLAQEEAQKLIDMDQVVAEAIRRTEQAGIVFIDEIDKIAGRERGHGPDVSRE 312

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V T++G + TDHILFIA+GAFH++RP+DL+PE+QGRFP+RV L+ L
Sbjct: 313 GVQRDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHIARPSDLIPELQGRFPIRVELQPL 372

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D+++ALAD+A   N    +IGARRL
Sbjct: 373 TRDDFKRILTEPDNALLRQYQALLATDGVELEFTPDAVEALADMAARANQQAENIGARRL 432

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++ER+LE ++F A D  +  VV+DA +VR  +     + D+  +IL
Sbjct: 433 HTLLERLLEPVAFDAPDALQGKVVVDAAFVRQRLEGVLQDQDLSRYIL 480


>gi|226313075|ref|YP_002772969.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus
           brevis NBRC 100599]
 gi|226096023|dbj|BAH44465.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus
           brevis NBRC 100599]
          Length = 473

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/463 (43%), Positives = 308/463 (66%), Gaps = 34/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR IV  LD+YI+GQ  AK+A+A+ALRNR+RR +LP  + DE++PKNIL++GPTGVG
Sbjct: 14  QLTPRTIVEHLDKYIVGQAQAKKAIAVALRNRYRRSRLPEQMIDEVVPKNILMIGPTGVG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ +I  V++ + + V+E+
Sbjct: 74  KTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEASIRTVKQEKVESVKEK 133

Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155
           A   A E I++ LV     SN+                              R     +L
Sbjct: 134 AEKLANEAIVNVLVPSRKQSNSFKNPLEMFFGGQQQQQQDTTDQEEVSIEQQRRQVMWQL 193

Query: 156 RDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
            +G++ ++ I+IEV D S  + + F +PG   +G + + ++   +M   R KK ++ ++ 
Sbjct: 194 TNGQLEEQMIEIEVEDQSPSMFDMFQVPGTEQMG-MQMQDMLGSLMPK-RMKKRKLRIKD 251

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L++ E+ +L+DMD V ++SI+  E +GI+F+DE DKI  +D G G  VSREGVQRD
Sbjct: 252 ARKVLIQQEAQKLVDMDEVTQESIRRAEQHGIIFIDEIDKIAGKD-GRGPDVSREGVQRD 310

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL   DF
Sbjct: 311 ILPIVEGSTVMTKYGPVKTDYVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLRVEDF 370

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L+ QY  L++TEG+ ++FT ++I  LA +A  +N +  +IGARRL T++E
Sbjct: 371 VRILTEPKNALLKQYVALLETEGVQVEFTPEAIQELARLAAEVNQSTDNIGARRLHTILE 430

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A ++  + V I  +YV+  +G      D+  +IL
Sbjct: 431 KLLEDLSFEAPEIHLEVVQITPDYVKQKLGTIVGNKDLSQYIL 473


>gi|261855923|ref|YP_003263206.1| heat shock protein HslVU, ATPase HslU [Halothiobacillus
           neapolitanus c2]
 gi|261836392|gb|ACX96159.1| heat shock protein HslVU, ATPase subunit HslU [Halothiobacillus
           neapolitanus c2]
          Length = 446

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/454 (48%), Positives = 309/454 (68%), Gaps = 29/454 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ELD++I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPKEIVTELDKHIVGQAAAKRAVAIALRNRWRRQQVGEPLRGEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+ + + R+    EVR+
Sbjct: 61  GKTEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADIGLKMQRQIAMVEVRD 120

Query: 125 QASINAEERILDALV------GKTATS---------NTREVFRKKLRDGEISDKEIDIEV 169
           +A I  E R+LDAL+      G  +T+         NTRE FR+KLR+GE+ DKE++IE+
Sbjct: 121 KAQIAGENRVLDALLPAPRDEGWNSTADSHRDEAYRNTREKFRQKLRNGELDDKEVEIEL 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMRDE 223
             T+S+I     PG        + E+ S++ G       G+ +  R+ V +    L  +E
Sbjct: 181 RQTASNIDILSPPG--------MEEMASQIRGMFQNVNQGKTQTRRLPVSEALKLLTEEE 232

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           +  L++ + V   +++ VE +GIVF+DE DK+  R    G  VSREGVQRDLLP++EGS+
Sbjct: 233 AGNLVNEEEVRAQALERVEQHGIVFIDEIDKVAKRGEYGGGEVSREGVQRDLLPIIEGST 292

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TK G + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+ ++
Sbjct: 293 VNTKLGMVKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELEALSAKDFVRILTEPDA 352

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI Q+  L+ +E   + F++++I  +A++A  +N    +IGARRL TVME +LE +SF 
Sbjct: 353 ALIRQHTALLASEQFEVQFSDEAIQRIAEIAFEVNRRTENIGARRLHTVMEHLLEALSFD 412

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A     +T+ IDA++V   +G    + D+  FIL
Sbjct: 413 ADTRSGETMNIDADFVDQRLGALAEDEDLSRFIL 446


>gi|78188754|ref|YP_379092.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           chlorochromatii CaD3]
 gi|78170953|gb|ABB28049.1| Heat shock protein HslU [Chlorobium chlorochromatii CaD3]
          Length = 495

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/476 (46%), Positives = 313/476 (65%), Gaps = 51/476 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IVS+LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 27  NLTPSQIVSQLDKYIIGQKDAKKSVAIALRNRLRRQSVSDELRDEIMPNNIIMIGPTGVG 86

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE 
Sbjct: 87  KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVALVRSEKSEEVREA 146

Query: 126 ASINAEERILDALV------------------------------GKTATSN--TREVFRK 153
           A+I  EERILD L+                               K A  N  TR+   +
Sbjct: 147 AAIFVEERILDILIPPIVANQHTNDEEQEEQQEEGQEEQSPSDQKKLAEMNRRTRKKMVE 206

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVM-----GSGRK- 205
           +LR G++ D++I++       D+S  D PGG     G L   E    +M     G  RK 
Sbjct: 207 RLRSGKLEDRQIEL-------DVSGNDSPGGMMQIFGPLGHMEEIGSLMQDLMSGMPRKR 259

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---N 262
           KK R+++ +    L ++E  +LIDM++V +++I  VE  GIVF+DE DKI +  +G    
Sbjct: 260 KKRRVTIAEARKLLEQEEVQKLIDMESVIKEAINKVEQSGIVFIDEIDKIASPTTGAGGK 319

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
           G  VSREGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFH+++P+DL+PE+QGRFP+
Sbjct: 320 GPDVSREGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHLAKPSDLIPELQGRFPI 379

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV LKSL + DF LILT  ++ LI QY  ++ TEG+ L FTE +I  +A +A  +N  V 
Sbjct: 380 RVELKSLTEDDFYLILTQPDNALIKQYSAMLATEGVTLHFTEGAIREIARIAAQVNENVE 439

Query: 383 DIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T+M  +LE++ F+   +  +  V ID + VR  +    ++ D+  +IL
Sbjct: 440 NIGARRLHTIMTNLLEELMFNIPENFSDDNVEIDEDMVRNKLNQVVADRDLSQYIL 495


>gi|317121811|ref|YP_004101814.1| heat shock protein HslVU, ATPase HslU [Thermaerobacter marianensis
           DSM 12885]
 gi|315591791|gb|ADU51087.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           marianensis DSM 12885]
          Length = 485

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/467 (48%), Positives = 312/467 (66%), Gaps = 39/467 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELDRYI+GQ  AKRAVAIALRNRWRRQQLP  LRDE+ PKNIL++GPTGVGK
Sbjct: 22  LTPRQIVAELDRYIVGQAAAKRAVAIALRNRWRRQQLPPQLRDEVAPKNILMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDLV+ AI +V+  R   V+++A
Sbjct: 82  TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLVETAIRMVKAERMATVQDRA 141

Query: 127 SINAEERILDALVGK--------------------TATSNTREV--------------FR 152
              A+ER+LD LV                       A S    V                
Sbjct: 142 RAAADERLLDVLVPPPRRRAQRFSSPWEMLLGSLGAAPSPAEPVRPEEEEDWRRRRQEVA 201

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG--ILNLSELFSKVMGSGRKKKIRM 210
            +LR GE+ D+ ++IEV D +  +   DI GG  +    LN+ +L  K     RK++ R+
Sbjct: 202 ARLRAGELEDQVVEIEVEDQTPPM--VDILGGPGLEEMTLNVQDLL-KDWLPRRKRRRRL 258

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L ++E+ +LIDMD V  ++++  E  GIVF+DE DKI  R+ G+G  VSREG
Sbjct: 259 PVREAREVLAQEEAQKLIDMDQVVAEAVRRTEQAGIVFIDEIDKIAGRERGHGPDVSREG 318

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V T++G + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+ L 
Sbjct: 319 VQRDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQPLT 378

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D++D LA +A   N    +IGARRL 
Sbjct: 379 REDFKRILTEPDNALLRQYQALLATDGVELEFTPDAVDELAAMAARANEQAENIGARRLH 438

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ERVLE ++F A D  +  VV+DA +VR  +     + D+  +IL
Sbjct: 439 TLLERVLEPLAFDAPDALQGKVVVDAAFVRQRLEGVLKDQDLSRYIL 485


>gi|225621070|ref|YP_002722328.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225215890|gb|ACN84624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 453

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/452 (45%), Positives = 314/452 (69%), Gaps = 20/452 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR+IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP +LRDE+ PKNI+L+GP
Sbjct: 6   KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPDELRDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI  ++ +   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFDLKTAMMKE 125

Query: 122 VREQA--------------SINAE--ERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           V ++A              S+  E  E I +    K    N +E  +K++++G+  +  +
Sbjct: 126 VEKEATEIALDKLAKLLLPSVKKENDENISEEEAEKK--KNAKEQIKKRIQNGDFDESYV 183

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I+++  ++ +    IPG        +  +   +M + +K K R+ V++    L+ + S+
Sbjct: 184 EIKISSGNNRMFGI-IPGMGFEESDMIQSMVGSIMPTNKKHK-RLRVKEAKKYLINEASE 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            LIDMD +  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+
Sbjct: 242 SLIDMDKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVN 301

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           T+YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ +
Sbjct: 302 TRYGPVKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAI 361

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY+EL+KTEG+ ++F E+++ A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA 
Sbjct: 362 TKQYQELLKTEGVTIEFEEEALSAIADIAYNINTNVENIGARRLYTIMEKVFEEISFSAD 421

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + + + I+A+ ++  + D     D+  +IL
Sbjct: 422 EHKGEFIKINADNIKESMKDIEDNRDISRYIL 453


>gi|254490675|ref|ZP_05103860.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga
           thiooxidans DMS010]
 gi|224464131|gb|EEF80395.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga
           thiooxydans DMS010]
          Length = 439

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/439 (50%), Positives = 302/439 (68%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV ELD+ IIGQQ AK+AVAIALRNRWRR+QL + L+ E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKQIVLELDKRIIGQQAAKKAVAIALRNRWRRKQLESSLQQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++RE     V+ +
Sbjct: 63  KTEIARRLAALANAPFIKVEATKFTEVGYVGRDVESIIRDLAETAMKLLREKAIQAVKSK 122

Query: 126 ASINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILDAL      V     S TR+ FRK LR+G++ D+E+++E+      +   
Sbjct: 123 AEDAAEDRILDALLRPARDVETEDDSTTRQRFRKMLREGKLDDREVELELNAPQVGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L ++F + MGS RK   +++V     +L  +E+ +LI+ + +  + + 
Sbjct: 183 SPPGMEEM-TNQLQDMF-QSMGSQRKTTRKLTVSNALRQLAEEEALKLINEEELKAEVLD 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            VE  GIVFLDE DKI  R  G+G   VSR GVQRDLLPLVEGS+VSTKYG I TDHILF
Sbjct: 241 SVEQNGIVFLDEIDKITGRGEGSGSADVSRAGVQRDLLPLVEGSTVSTKYGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L   DF  ILT+ +++L  QY  L+ TEG+
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALTSQDFVRILTEPDASLTEQYVALLATEGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FTE+ I  +A++A  +N    +IGARRL T++ER+LEDIS++A       V +D  Y
Sbjct: 361 ELEFTEEGIQRIAELAWEVNEKTENIGARRLHTMLERLLEDISYNAGSELNFKVTVDRSY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   + +   + D+  +IL
Sbjct: 421 VDQQLAELSQDEDLSRYIL 439


>gi|307718594|ref|YP_003874126.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta
           thermophila DSM 6192]
 gi|306532319|gb|ADN01853.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta
           thermophila DSM 6192]
          Length = 448

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/444 (48%), Positives = 311/444 (70%), Gaps = 18/444 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ  AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 11  DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+   ++ VRE+
Sbjct: 71  KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQEGVREE 130

Query: 126 ASINAEERILDALV--GKTATS------NTREVFRKKLRDGEISDKEIDIEVA-DTSSDI 176
           A    EER+LD L+   +TAT        TRE FR+ LR GE+ D+ +++ V       I
Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLRKGELDDRMVEVSVRRPLMPSI 190

Query: 177 SNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             F   G   +G+    L+ LF      G +K+ R+ V++    L+ +E +RLID D V 
Sbjct: 191 EVFSGTGFEEIGMSLGGLANLF------GGEKRKRVKVRQAKELLLAEEMERLIDTDQVA 244

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             + Q VE  GIVF+DE DKI  ++   G + VSREGVQRDLLP++EG+ V+T+YG ++T
Sbjct: 245 EIARQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDT 304

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F  ILT  ++ LI QY EL+
Sbjct: 305 SHILFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELL 364

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT+++++ +A +A  +N+   +IGARRL T+ME VLE++SF+  ++Q + + 
Sbjct: 365 KTEGVEISFTQEALEEIARIAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKIT 424

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I A+YV+  +       D+  +IL
Sbjct: 425 ITADYVKERLAKVLVNEDITRYIL 448


>gi|308173578|ref|YP_003920283.1| two-component ATP-dependent protease [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606442|emb|CBI42813.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus amyloliquefaciens DSM 7]
          Length = 467

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   +  +  F                          RK++    
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +  +  N+ +  S ++   +KK+ +M+V+
Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEASKLIDMDEVSQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|315186393|gb|EFU20153.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           thermophila DSM 6578]
          Length = 448

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/444 (47%), Positives = 309/444 (69%), Gaps = 18/444 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ  AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 11  DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+   +  V+E+
Sbjct: 71  KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQAGVQEE 130

Query: 126 ASINAEERILDALV--GKTATS------NTREVFRKKLRDGEISDKEIDIEVA-DTSSDI 176
           A    EER+LD L+   +TAT        TRE FR+ L+ GE+ D+ +++ V       I
Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLKKGELDDRMVEVSVRRPLMPSI 190

Query: 177 SNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             F   G   +G+    L+ LF      G +K+ R+ V++    L+ +E +RLID D V 
Sbjct: 191 EVFSGTGFEEIGMSLGGLANLF------GGEKRKRVKVRQAKELLLAEEMERLIDTDQVA 244

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             + Q VE  GIVF+DE DKI  ++   G + VSREGVQRDLLP++EG+ V+T+YG ++T
Sbjct: 245 EIARQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDT 304

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F  ILT  ++ LI QY EL+
Sbjct: 305 SHILFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELL 364

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT+++++ +A  A  +N+   +IGARRL T+ME VLE++SF+  ++Q + + 
Sbjct: 365 KTEGVEISFTQEALEEIARTAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKIT 424

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I A+YV+  +       D+  +IL
Sbjct: 425 ITADYVKERLAKVLVNEDITRYIL 448


>gi|194336304|ref|YP_002018098.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308781|gb|ACF43481.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 496

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/476 (46%), Positives = 313/476 (65%), Gaps = 52/476 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ +  DLRDE+MP NI+++GPTGVG
Sbjct: 29  NLTPNQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQHVSDDLRDEIMPNNIIMIGPTGVG 88

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  R +EVRE+
Sbjct: 89  KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSERSEEVREK 148

Query: 126 ASINAEERILDALVGKTATS--------------------------------NTREVFRK 153
           A +  EER+LD L+   A+S                                 +R    +
Sbjct: 149 AVLLVEERLLDILLPPVASSRNAESDDESSAEEGVTESPAADEHDKSLEVNRRSRRKMLE 208

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---RK 205
           +LR+G++ D++I++++          D PGG     G L   E    +M    SG   ++
Sbjct: 209 RLRNGKLEDRQIEMDITG--------DAPGGMMQVFGPLGQMEEIGGIMQDLMSGLPRKR 260

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
           KK R+S+ +    L ++E  +LIDMD+V +++I  VE  GIVF+DE DKI    SG+G  
Sbjct: 261 KKRRVSIAEARKILEQEEVQKLIDMDSVVKEAINKVEQSGIVFIDEIDKIATPSSGSGSK 320

Query: 266 ---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
              VSREGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+
Sbjct: 321 GPDVSREGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPI 380

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV LKSL + DF LILT  E+ LI QY  L+ TEG+ L F++ +I  +A +A  +N +V 
Sbjct: 381 RVELKSLTEEDFYLILTQPENALIKQYSALLATEGVDLTFSDGAIREIARIAARVNESVE 440

Query: 383 DIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T+M  +LE++ F+   +  ++ V ID   V+  +    ++ D+  +IL
Sbjct: 441 NIGARRLHTIMTNLLEELMFNIPENFSDERVEIDETMVKEKLNHVVADRDLSQYIL 496


>gi|328553489|gb|AEB23981.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           amyloliquefaciens TA208]
 gi|328911719|gb|AEB63315.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus amyloliquefaciens LL3]
          Length = 467

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   +  +  F                          RK++    
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +  +  N+ +  S ++   +KK+ +M+V+
Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEAGKLIDMDEVSQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|320354504|ref|YP_004195843.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus
           propionicus DSM 2032]
 gi|320123006|gb|ADW18552.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus
           propionicus DSM 2032]
          Length = 469

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/471 (47%), Positives = 308/471 (65%), Gaps = 36/471 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   + +P+E V+ELDRYIIGQ +AKR+VAIALRNRWRRQQ+   LR+E+ PKNI+++G
Sbjct: 1   MKGINSLTPKETVAELDRYIIGQPEAKRSVAIALRNRWRRQQVQPPLREEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL  +A+N+V +    
Sbjct: 61  PTGVGKTEIARRLAHLAQSPFLKVEASKFTEVGYVGRDVESMIRDLTQLAVNMVTKEEEA 120

Query: 121 EVREQASINAEERILDALVGKT----------ATSN--------------------TREV 150
            V+E+A+  AEER+LD L+ +T            SN                    TRE 
Sbjct: 121 GVQEKAAALAEERLLDLLLPRTPGHGAGSSTPTASNVISLGYDGAEGRQEELRGQTTRER 180

Query: 151 FRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           FR+ LR GE+ D+ +++ V A   + +       G      +L E FSK     +K+  +
Sbjct: 181 FREMLRRGELDDRVVELSVSAGGGTPVVEVFSASGMEEMQNSLQEAFSKFF-PKKKQAKK 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---V 266
           M V +    L R+E++RL+D ++V   +I+  E  GI+FLDE DKI +R  G G G   V
Sbjct: 240 MKVPQALEFLKREEAERLVDTESVTEKAIRRTEQSGIIFLDEIDKIASR-GGTGSGSPDV 298

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRDLLP+VEG++V+TKYG + TDHILFIASGAFH+ +P+DL PE+QGRFP+RV+L
Sbjct: 299 SREGVQRDLLPIVEGTTVTTKYGPVKTDHILFIASGAFHLCKPSDLAPELQGRFPIRVNL 358

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            +L + +F  ILT+  + LI QY  L+ TE I L+F E++I  +A +AV +N    DIGA
Sbjct: 359 HALGEEEFFRILTEPRNALIKQYTALLATEDIRLEFEEEAIREMARIAVQVNQKTEDIGA 418

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL TV+ERVL+++SF A D  +    + A+YVR  + D     D+  +IL
Sbjct: 419 RRLHTVIERVLDELSFDAPDRDDLAFTVTADYVRRQLTDISENEDLSRYIL 469


>gi|254750996|ref|ZP_05203035.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 460

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/450 (46%), Positives = 308/450 (68%), Gaps = 38/450 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 8   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 67

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 68  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 127

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 128 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK +
Sbjct: 188 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 243

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSRE
Sbjct: 244 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 302

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 303 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 362

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL
Sbjct: 363 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 422

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            T+ME++LED+SF AS++  + + I  +YV
Sbjct: 423 HTIMEKLLEDLSFEASEITLEKITITPQYV 452


>gi|99034191|ref|ZP_01314270.1| hypothetical protein Wendoof_01000935 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 396

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/397 (51%), Positives = 293/397 (73%), Gaps = 4/397 (1%)

Query: 44  PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           P  LRDE++PKNIL++G TGVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ II
Sbjct: 1   PFPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSII 60

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
           RDLVD AI +V+E  R  + ++A I AE+ I++++VG+ AT  ++++FR++LR+ E  D 
Sbjct: 61  RDLVDAAIVLVKEKARKALAKKALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDG 120

Query: 164 EIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELM 220
           E+ I V ++ S +  FDIPG  G  VG++N++E+  K+  GS + K I + V++    L+
Sbjct: 121 EVSINVRESKSMLPTFDIPGMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILI 180

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +ES+RL+D D + +++I +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+E
Sbjct: 181 NEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLE 239

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+QGR P+RV LK+L + D   IL +
Sbjct: 240 GTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKE 299

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ES+L+ QY  LMKTE + L+FT+D I  +A++A  +N  V +IGARRL TVME++L++I
Sbjct: 300 PESSLLKQYIALMKTENVTLEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEI 359

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF AS+   +  +ID++YV+  +     + D+  FIL
Sbjct: 360 SFIASEKNSEKFIIDSKYVKDKLESISKQLDLSKFIL 396


>gi|154686032|ref|YP_001421193.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           amyloliquefaciens FZB42]
 gi|166221460|sp|A7Z4N6|CLPY_BACA2 RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|154351883|gb|ABS73962.1| ClpY [Bacillus amyloliquefaciens FZB42]
          Length = 467

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   +  +  F                          RK++    
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGNQAANDDEADQQEEASLEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +  +  N+ +  S ++   +KK+ +M+V+
Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEAGKLIDMDEVGQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|145219766|ref|YP_001130475.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205930|gb|ABP36973.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeovibrioides DSM 265]
          Length = 492

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/470 (46%), Positives = 315/470 (67%), Gaps = 41/470 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 26  HLTPHQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVGEELRDEIMPNNIIMIGPTGVG 85

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+
Sbjct: 86  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 145

Query: 126 ASINAEERILDALVGKTATS-------------------------------NTREVFRKK 154
           A+ + EERI+D L+   A S                                +RE   ++
Sbjct: 146 AAAHVEERIIDILLPPVAGSAEDDIQEALIEGDEGSSSSFEPKDESLEVNRRSREKMLQR 205

Query: 155 LRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVM-GSGRK-KKIRMS 211
           LR+G++ D++I+++V+ D+S  +     P G    +  +  +   +M G  RK KK R++
Sbjct: 206 LREGKLEDRQIEMDVSGDSSGGMMQIFGPMGQ---MEEIGGIMQDLMNGLPRKSKKRRVT 262

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSR 268
           +      L ++E  +LIDMDTV +++I  VE  GIVF+DE DKI A  +G G     VSR
Sbjct: 263 IADARRILEQEEVQKLIDMDTVVKEAIIKVEQSGIVFIDEIDKIAAPTTGGGAKGPDVSR 322

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKS
Sbjct: 323 EGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKS 382

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT   + LI QY+ LM TEG+ L FT+ SI  +A  A  +N +V +IGARR
Sbjct: 383 LTEEDFYLILTQPRNALIKQYRALMGTEGVDLQFTDGSIREIARTAAVVNESVENIGARR 442

Query: 389 LQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T+M  +LE++ F    ++ +  V+ID E V+  +    S+ D+  +IL
Sbjct: 443 LHTIMTNLLEELMFDIPENMSKGKVLIDEEMVKAKLNHVASDRDLSQYIL 492


>gi|120602656|ref|YP_967056.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris DP4]
 gi|166221476|sp|A1VDW3|HSLU_DESVV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120562885|gb|ABM28629.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris DP4]
          Length = 441

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/447 (48%), Positives = 303/447 (67%), Gaps = 23/447 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L   LRDE+ PKNI+++GPTGVG
Sbjct: 3   TLTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+     VR +
Sbjct: 63  KTEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRAR 122

Query: 126 ASINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS--DIS 177
           A   AEER+LD L+      G     +TR+  R   R G + D+E+D+EV +++    + 
Sbjct: 123 AEAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMD 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSG---RKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            F +PG  S+G       F  +MG     R+K  +M +++ +  L+ +E+ RL+D D V 
Sbjct: 183 IFAMPGMESMG-----NQFRDLMGKAFPARRKMRKMKLREAWNLLVDEEASRLLDQDKVV 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS 290
             + + VE  GI+F+DE DK+    SG G      +SREGVQRDLLP+VEGS V+TKYG 
Sbjct: 238 DIARERVEQTGIIFIDELDKVA---SGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGM 294

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L +L + +F  ILT+  + L  QY 
Sbjct: 295 VRTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELDALGRDEFYRILTEPHNALTRQYA 354

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ + FT+D +  +A  A  +N    +IGARRL T+MER+L DISF A D   +
Sbjct: 355 ALLATEGVTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGE 414

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V +DA YVR H+ D   + D+  +IL
Sbjct: 415 HVTVDAAYVRTHLEDVRVDKDLSRYIL 441


>gi|269925575|ref|YP_003322198.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789235|gb|ACZ41376.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 467

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/473 (45%), Positives = 312/473 (65%), Gaps = 49/473 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +F+PR+IV ELD+YI+GQ  AKRA+A+ALRNR+RRQQLP ++RDE+MPKN++L+GPTGVG
Sbjct: 3   DFTPRQIVKELDKYIVGQDKAKRALAVALRNRYRRQQLPPEIRDEVMPKNLMLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRL++L  APFIKVE TKFTE+GYVG +VE I+R+LV+ ++N+V     D V+E+
Sbjct: 63  KTELARRLSKLVDAPFIKVEATKFTEVGYVGHDVESIVRELVETSVNMVHMKAMDRVKEE 122

Query: 126 ASINAEERILDALVGKT---------------------ATSNTREVFRKKLR-------- 156
           A   A ER+++ LV ++                     A S  + V  +K++        
Sbjct: 123 AEKAANERLINYLVRQSPKYKVLQEELESLADSEQESAAASTKKVVLERKMKRQRKRMAQ 182

Query: 157 -------DGEISDKEIDIE-----VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
                  D EI + E+D +     V D  +DI + D    A+        LFS +  S R
Sbjct: 183 MLAERRLDDEIVEIEVDPDPDLYSVVDIFADIGDSDESEDAT-------PLFS-LDQSNR 234

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           K+  ++SV +    L+++E+ ++ID D V  + +Q  E  GIVF+DE DK+++    +  
Sbjct: 235 KRSRKVSVAEARRILVQEEAQKMIDFDAVIDEGVQKAEQDGIVFIDEIDKLISNGYDSNA 294

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VS EGVQRDLLP+VEGS+V T+YG++ TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV
Sbjct: 295 DVSGEGVQRDLLPIVEGSNVVTRYGTVKTDHILFIAAGAFHDSKPSDLIPELQGRFPLRV 354

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L+  D + IL + +++LI QY+ L+ TEG+ L+FT D ID +A  A  +N  + +I
Sbjct: 355 ELEDLDAEDLKAILVEPDNSLIKQYQALLGTEGVELEFTPDGIDEIARFAHEMNLKMENI 414

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRLQTVMERVLED++F A+DL++K V ID  YV+  + +     D+  FIL
Sbjct: 415 GARRLQTVMERVLEDVAFDATDLEDKHVRIDRAYVKARLENLIENEDLSRFIL 467


>gi|126654060|ref|ZP_01725886.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|126589440|gb|EAZ83587.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
          Length = 466

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/465 (44%), Positives = 310/465 (66%), Gaps = 36/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALV------------------GKTATSN------TREVFRKK------L 155
           A   A E I+  LV                  GK  TS         EV  K+      L
Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSEETEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212
           R+G++ ++ I +EV + +  I  FD   G  + +     + ++ S +M   +KK+ R+ V
Sbjct: 185 RNGKLENEWITVEVTEQTPSI--FDALQGTGMDMSANNGMQDMLSSLMPKKQKKR-RVQV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L  +E+++LID D V ++SI   E  GI+F+DE DKI +++  +   VSREGVQ
Sbjct: 242 KDARRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K 
Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A  +N    +IGARRL T+
Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ER+LE++SF A+++   ++ I+A YV   +       D+  FIL
Sbjct: 422 LERLLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|169827115|ref|YP_001697273.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           sphaericus C3-41]
 gi|168991603|gb|ACA39143.1| ATP-dependent hsl protease ATP-binding subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 466

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/465 (44%), Positives = 311/465 (66%), Gaps = 36/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALV------------------GKTATS------NTREVFRKK------L 155
           A   A E I+  LV                  GK  TS      +  EV  K+      L
Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSDETEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212
           R+G++ ++ + +EV + +  I  FD   G  + +     + ++ S +M   +KK+ R+ V
Sbjct: 185 RNGKLENEWVTVEVTEQTPSI--FDALQGTGMDMSANNGMQDMLSSLMPKKQKKR-RVQV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L  +E+++LID D V ++SI   E  GI+F+DE DKI +++  +   VSREGVQ
Sbjct: 242 KDARRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K 
Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A  +N    +IGARRL T+
Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ER+LE++SF A+++   ++ I+A YV   +       D+  FIL
Sbjct: 422 LERLLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|296126031|ref|YP_003633283.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira
           murdochii DSM 12563]
 gi|296017847|gb|ADG71084.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira
           murdochii DSM 12563]
          Length = 453

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/450 (44%), Positives = 310/450 (68%), Gaps = 16/450 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR+IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP DL+DE+ PKNI+L+GP
Sbjct: 6   KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEDLKDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI  ++ +   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFELKTAMMKE 125

Query: 122 VREQA--------------SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           V ++A              S+  EE    +        N +E  +K++ +G+  +  +++
Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEENENVSEEEMEKKKNAKEQIKKRIANGDFDESYVEL 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++  + + +    IPG        +  +   +M   +K K R+ V++    L+ + S+ L
Sbjct: 186 KITGSQNRMFGI-IPGMGFEENDMIQSMVGSIMPQSKKHK-RLRVKEAKKHLINEASESL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           IDM+ +  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+T+
Sbjct: 244 IDMEKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNTR 303

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ +  
Sbjct: 304 YGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAITK 363

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL+KTEG+ ++F E++++A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + 
Sbjct: 364 QYQELLKTEGVTIEFEEEALEAIADMAYNINTNVENIGARRLYTIMEKVFEEISFSADEH 423

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + + I+A+ ++  + D     D+  +IL
Sbjct: 424 KGEFIKINADNIKDAMKDIEDNRDISRYIL 453


>gi|46579878|ref|YP_010686.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|62286833|sp|Q72C17|HSLU_DESVH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|46449294|gb|AAS95945.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234121|gb|ADP86975.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris RCH1]
          Length = 441

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/447 (48%), Positives = 302/447 (67%), Gaps = 23/447 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L   LRDE+ PKNI+++GPTGVG
Sbjct: 3   TLTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+     VR +
Sbjct: 63  KTEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRAR 122

Query: 126 ASINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS--DIS 177
           A   AEER+LD L+      G     +TR+  R   R G + D+E+D+EV +++    + 
Sbjct: 123 AEAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMD 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSG---RKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            F +PG  S+G       F  +MG     R+K  +M +++ +  L+ +E+ RL+D D V 
Sbjct: 183 IFAMPGMESMG-----NQFRDLMGKAFPARRKMRKMKLREAWNLLVDEEASRLLDQDKVV 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS 290
             + + VE  GI+F+DE DK+    SG G      +SREGVQRDLLP+VEGS V+TKYG 
Sbjct: 238 DIARERVEQTGIIFIDELDKVA---SGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGM 294

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L  L + +F  ILT+  + L  QY 
Sbjct: 295 VRTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELDPLGRDEFYRILTEPHNALTRQYA 354

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ + FT+D +  +A  A  +N    +IGARRL T+MER+L DISF A D   +
Sbjct: 355 ALLATEGVTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGE 414

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V +DA YVR H+ D   + D+  +IL
Sbjct: 415 HVTVDAAYVRTHLEDVRVDKDLSRYIL 441


>gi|183221725|ref|YP_001839721.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911800|ref|YP_001963355.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776476|gb|ABZ94777.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780147|gb|ABZ98445.1| ATPase component of the HslUV protease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 472

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/459 (46%), Positives = 307/459 (66%), Gaps = 34/459 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD +IIGQ  AKRAVA+ALRNR RR++L   LR+E+ PKNI+++GPTGVGK
Sbjct: 20  LTPRQIVERLDEHIIGQTKAKRAVAVALRNRSRRRKLNESLREEIYPKNIIMIGPTGVGK 79

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPFIKVE TK+TE+GYVGR+VE ++RDL   A+N+V+   RD V+++A
Sbjct: 80  TEIARRLSKLCGAPFIKVEATKYTEVGYVGRDVESMVRDLAMGALNLVKSEFRDRVKDKA 139

Query: 127 SINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDIEV 169
              AEE ILDA++                    +   +RE FR+KLR G +S++EI+I++
Sbjct: 140 EERAEEIILDAILPPIFHKKEEDLNPEEKERFQSYKESREKFREKLRKGILSEQEIEIDI 199

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMG---------SGRKKKIRMSVQKCYPELM 220
              S+      +P     G  N+ E+ +++           SG++K   + V      L+
Sbjct: 200 PKPSAQTG---MPMLQVFGAGNMEEMDNQIQNLLGDLMPKKSGKRK---VKVSDAEKILL 253

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
             E+++LID D +  ++++ VE  GI+FLDE DKI  R+   G  VSREGVQRDLLP+VE
Sbjct: 254 EAEAEKLIDSDKIQSEAVRRVEEMGIIFLDEIDKIAGREGRQGADVSREGVQRDLLPIVE 313

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V+TK G I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L++L ++DF  ILT 
Sbjct: 314 GSTVNTKLGPIKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELETLTEADFIQILTT 373

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +S+L  QY+ L+ TEG+ +++T+D I  +A +A  +N    +IGARRL T+ME++LED 
Sbjct: 374 PKSSLTKQYEALLATEGVKIEYTKDGIAEIAKLAFQMNEKNENIGARRLNTIMEKLLEDT 433

Query: 401 SFSASDLQ--EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL   +K VVI+ +YV   +     + D+  FIL
Sbjct: 434 SFDAPDLPDDQKHVVINQDYVSGKLKGIIEDKDLSRFIL 472


>gi|322434047|ref|YP_004216259.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX9]
 gi|321161774|gb|ADW67479.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX9]
          Length = 545

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/529 (42%), Positives = 322/529 (60%), Gaps = 98/529 (18%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y++GQ  AKRAVAIALRNR RRQ+LP DL D++MPKNI+++GPTGVG
Sbjct: 18  ELTPREIVAELDKYVVGQGAAKRAVAIALRNRMRRQKLPPDLADDIMPKNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE I+RDLV++AI++VRE + ++V ++
Sbjct: 78  KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIVRDLVEIAIDLVREEKLEDVADK 137

Query: 126 ASINAEERILD--------------------------------------------ALVG- 140
           A ++AE+R+LD                                            A VG 
Sbjct: 138 AELHAEDRLLDLLLPPTPAAATAANAAAATEVAGTNVIQLPMQMDTESPEYVAPVADVGP 197

Query: 141 ---KTATSNTREVFRKKL----RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
              K     + E  R+KL    R+G++ ++ ++I+V D +     F    G     ++L 
Sbjct: 198 SEDKKHEPTSYERTREKLRQQFREGKLDERVVEIDVRDRNQPSFEFIAAPGQDESDMSLK 257

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
           ++   + G  R KK +M V + +  L+++E  RL+DMD V + +++ VE  GIVFLDE D
Sbjct: 258 DVLPGLFGQ-RTKKRKMKVAEAFDYLVQEEEGRLVDMDQVTKLAVERVEESGIVFLDEID 316

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313
           KI  R+ G+G  VSREGVQRD+LP+VEG++V+TKYG ++TDHILFIA+GAFHVS+P+DL+
Sbjct: 317 KIAGREGGHGPDVSREGVQRDILPIVEGTTVNTKYGMVSTDHILFIAAGAFHVSKPSDLI 376

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+QGRFP+RV L+SL   DF  ILT+ +S+L+ Q   L++TEG+ L+FT +++  +A+ 
Sbjct: 377 PELQGRFPIRVELQSLTVGDFVRILTEPKSSLVKQSTALLETEGLKLEFTPEALAEMAEF 436

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ------------------------- 408
           A  +N +  +IGARRL T+MERVL++ISF A DL                          
Sbjct: 437 AFKVNESTENIGARRLHTIMERVLDEISFQAPDLMKNAKGESSEEGVVGQVGHSAPLGGE 496

Query: 409 --------------------EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                               EK +V+D EYVR  +       D+  +IL
Sbjct: 497 VRPDSPPLPVIERRKEDGTVEKVIVVDPEYVRQQVAGIVKNQDLSRYIL 545


>gi|302389652|ref|YP_003825473.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter
           oceani DSM 16646]
 gi|302200280|gb|ADL07850.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter
           oceani DSM 16646]
          Length = 469

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/469 (45%), Positives = 317/469 (67%), Gaps = 39/469 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ++AK+ VAIALRNR+RRQ+L  +L++E+MPKNIL++GPTGVG
Sbjct: 3   DLTPRKIVEELDKYIVGQEEAKKCVAIALRNRYRRQKLSKELQEEIMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+  + ++V+++
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKMEKIEQVKDR 122

Query: 126 ASINAEERI-----------------LDALVGKTA-----------------TSNTREVF 151
           A   A+ RI                 L+AL G  +                     R+  
Sbjct: 123 ARELADLRIAEILQPDPVKTTNFRNPLEALFGNLSKVDFDEKDEEYESRIKIAREKRKAL 182

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            + ++ G++ ++ I+IEV D S  +   F   G   +GI N  +LF  ++   R+KK ++
Sbjct: 183 LEDIKSGKLDNEMIEIEVEDNSPPVLEVFSNSGIEEMGI-NFQDLFGGIL-PKRRKKKKL 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++      + ++E+ +LIDMD V  ++I+  E  GI+F+DE DKI  R+   G  VSREG
Sbjct: 241 TIATARKIMTQEEAQKLIDMDEVVTEAIKRAEETGIIFIDEIDKIAGREQSTGPDVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEG +V TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL+
Sbjct: 301 VQRDILPIVEGCTVVTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K D + IL + +++LI QYK L++TEGI + FTED+ID +   AV +N    +IGARRL 
Sbjct: 361 KEDLKRILVEPKNSLIKQYKALLETEGIKIHFTEDAIDEIVSSAVYVNQQNENIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKT--VVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ME++LEDISF+AS+++ +   VVID  YV   + D   + D+  +IL
Sbjct: 421 TIMEKLLEDISFNASEIRAEVSEVVIDRSYVSEKLRDIVKDKDLSMYIL 469


>gi|195953180|ref|YP_002121470.1| ATP-dependent protease ATP-binding subunit HslU [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932792|gb|ACG57492.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 437

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 308/440 (70%), Gaps = 12/440 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L  N +P+EIV+ LD+YIIGQQ+AK+ VAIALRNRWRRQ+LP  +RDE+ PKNIL++GP
Sbjct: 6   ELLKNLTPKEIVNYLDQYIIGQQEAKKQVAIALRNRWRRQKLPPHIRDEVSPKNILMIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA L  APF+KVE TK+TE+GYVGR+VE +IR+LV+++  +V++ R D 
Sbjct: 66  TGVGKTEIARRLANLIKAPFLKVEATKYTEVGYVGRDVESMIRELVNISYQLVKKERTDG 125

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V++ A   A  ++   +      S +  ++   ++ G+  D+ I+I++ +  S      +
Sbjct: 126 VKDVAREEAIRKVAQKISSLKNVSISEAIY--GIKSGKYDDELIEIDIQEKQS------M 177

Query: 182 PGGASVGILNLSELFSKVM----GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           P    +G+  L +L  ++     G G ++K ++ V+     L ++ ++  ID + +  ++
Sbjct: 178 PAIEVMGLQGLEDLDKQIRNLLGGIGGRRKKKLKVKDALNILEQEAAEEFIDKEDLESEA 237

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + + EN+GIVF+DE DKI  +  G G  VSREGVQRDLLP+VEG++V+TKYG + TDHIL
Sbjct: 238 VFLAENFGIVFIDEIDKIAVKHEGVGHSVSREGVQRDLLPIVEGTTVNTKYGPVKTDHIL 297

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH+++P+DL+PE+QGRFP+RV LK+L   DF  IL + ++ L  QYKEL+KTE 
Sbjct: 298 FIAAGAFHMAKPSDLVPELQGRFPIRVELKALTMEDFERILREPQNALTKQYKELLKTEN 357

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + +DFT+++I  +A +A  +NS   +IGARRL T+ME+++EDISF+A D++ + ++ID +
Sbjct: 358 VDIDFTDEAIKEIARIAEYINSKDENIGARRLYTIMEKLVEDISFNAPDMEGQHIIIDDK 417

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V   + D   + ++  +IL
Sbjct: 418 FVLSRLEDLAKDPEISKYIL 437


>gi|52080218|ref|YP_079009.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           licheniformis ATCC 14580]
 gi|52785595|ref|YP_091424.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           licheniformis ATCC 14580]
 gi|81825306|sp|Q65JN3|CLPY_BACLD RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|52003429|gb|AAU23371.1| two-component ATP-dependent protease (N-terminal serine protease)
           [Bacillus licheniformis ATCC 14580]
 gi|52348097|gb|AAU40731.1| ClpY [Bacillus licheniformis ATCC 14580]
          Length = 467

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ DAK+AVA+ALRNR+RR  L   LR+E++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVERLDQYIVGQLDAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+  A
Sbjct: 66  TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125

Query: 127 SINAEERILDALV-GKTATS------------------------------NTREVFRKKL 155
             NA +R++  LV G+   +                              N R+    +L
Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +    +N+ +  S +M   +KK+ +++V+
Sbjct: 186 ALGELEDHYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLM-PKKKKRRKLTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD   ++++Q  E  GI+F+DE DKI A+ SG  +   VSREGV
Sbjct: 243 EARKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKI-AKKSGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+ 
Sbjct: 302 QRDILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSI 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ L+ QYK L+KTEGI L+F++D+I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LE++SF A D+  + VVI  +YV   +G      D+  FIL
Sbjct: 422 ILERLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467


>gi|119357347|ref|YP_911991.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354696|gb|ABL65567.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeobacteroides DSM 266]
          Length = 495

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 314/475 (66%), Gaps = 51/475 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P +IV+ LD+YIIGQ +AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 29  HLTPNQIVALLDKYIIGQSEAKKSVAIALRNRLRRQNVGDELRDEIMPNNIIMIGPTGVG 88

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+
Sbjct: 89  KTEIARRLAKMAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRTEKSEEVREK 148

Query: 126 ASINAEERILDALVGKTATSN-------------------------------TREVFRKK 154
           A++  EER+LD L+   + S+                               +R+   ++
Sbjct: 149 AAVLVEERLLDILLPPVSHSHEEQEDRDAENEEMQVFDASQEVDKAKENNRKSRKKMLER 208

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---RKK 206
           LR G++ D++I++E+          D PGG     G +   E    +M    SG   ++K
Sbjct: 209 LRQGKLEDRQIEMEITG--------DAPGGMMQIFGPMGQMEEIGGIMQDLMSGLPRKRK 260

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--- 263
           K R+S+ +    L ++E  +LIDMD V +++I  VE  GIVF+DE DKI A  SG+G   
Sbjct: 261 KRRVSIAEARKILEQEEVQKLIDMDAVIKEAINKVEQSGIVFIDEIDKIAAPSSGSGGKG 320

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSREGVQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+R
Sbjct: 321 PDVSREGVQRDLLPIVEGSNVATKYGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIR 380

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V LKSL + DF  ILT  ++ LI QYK L+KTEG+ L FT+ +I  +A  A  +N +V +
Sbjct: 381 VELKSLTEEDFYKILTQPKNALIKQYKALLKTEGVELSFTDGAILEIAKTAAKVNESVEN 440

Query: 384 IGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T+M  +LE++ F+   ++ ++ + ID   V+  +    ++ D+  +IL
Sbjct: 441 IGARRLHTIMTNLLEELMFNIPENVTDEEIEIDETMVKEKLNHVAADRDLSQYIL 495


>gi|321315382|ref|YP_004207669.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           BSn5]
 gi|291484167|dbj|BAI85242.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021656|gb|ADV96642.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           BSn5]
          Length = 467

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 316/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQ+AK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA
Sbjct: 66  TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   S  +  F                          RK++    
Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +  +  N+ +  S +M   +KK+ +M+V+
Sbjct: 186 ALGELEDYYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++Q  E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEASKLIDMDEVSQEAVQRAEESGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 422 ILERLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467


>gi|218885411|ref|YP_002434732.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226704521|sp|B8DPH7|HSLU_DESVM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218756365|gb|ACL07264.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 483

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/483 (45%), Positives = 306/483 (63%), Gaps = 53/483 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD+YI+GQ  AKR VA+A+RNRWRRQQL   LRDE+ PKNI+++GPTGVG
Sbjct: 3   NLTPREIVSELDKYIVGQNAAKRMVAVAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ +PFIKVE TKFTE+GYVGR+VE ++RDL+++ I +VR    ++VR +
Sbjct: 63  KTEIARRLAKLSASPFIKVEATKFTEVGYVGRDVESMVRDLMEIGIALVRAEENEKVRVK 122

Query: 126 ASINAEERILDALVGKTAT----------------------------------------- 144
           A   AEER+LD L+   A                                          
Sbjct: 123 AEARAEERLLDLLLPGGAPQPAPAQGMGGLTFDLSASHSGGQAIPQPPAQADASQASPPT 182

Query: 145 ---------SNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPGGASVGILNLSE 194
                    S+TRE  R     G++ D+E+D+EV ++    +    +PG   VG   + +
Sbjct: 183 GTGSAPDSRSSTREKLRTLWHGGKLDDREVDMEVEESGGPQVGVLSMPGLEDVGS-QVRD 241

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
           +FSKV  S R+K+ RM V+  +  L ++E+DRLID D V   + + VE  GI+F+DE DK
Sbjct: 242 MFSKVFPS-RRKRRRMKVRDAFNLLTQEEADRLIDHDRVSDLARERVEQTGIIFIDEIDK 300

Query: 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314
           I +  +     VSREGVQRDLLP+VEGS V+TKYG + TDHILFIA+GAFH S+P+DL+P
Sbjct: 301 IASGSTQKSSDVSREGVQRDLLPIVEGSVVNTKYGMVRTDHILFIAAGAFHFSKPSDLIP 360

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+QGRFP+R  L +L K DF  ILT+  + L  QY  L++TEG+ ++FT D++  +A  A
Sbjct: 361 ELQGRFPLRAELSALGKDDFLRILTEPHNALTRQYTALLQTEGVHIEFTGDALREIAAFA 420

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
              N+   +IGARRL T++E++L D+SF A D     V +D++YVR H+ D  +  D+  
Sbjct: 421 EETNAQTENIGARRLYTILEKILADLSFEAPDRSGDRVTVDSDYVREHLADVRANKDLSR 480

Query: 435 FIL 437
           +IL
Sbjct: 481 YIL 483


>gi|158522506|ref|YP_001530376.1| ATP-dependent protease ATP-binding subunit [Desulfococcus
           oleovorans Hxd3]
 gi|238686894|sp|A8ZW65|HSLU_DESOH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|158511332|gb|ABW68299.1| heat shock protein HslVU, ATPase subunit HslU [Desulfococcus
           oleovorans Hxd3]
          Length = 456

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/457 (46%), Positives = 306/457 (66%), Gaps = 28/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV ELD+YI+GQ  AKR+VAIALRNRWRR+Q+P  +R+E+ PKNI+L+GPTGVG
Sbjct: 3   DLTPAEIVIELDKYIVGQAKAKRSVAIALRNRWRRRQVPEAMREEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  +PF+K+E +KFTE+GYVGR+VE ++RDLV++ +  ++ S R+ VRE+
Sbjct: 63  KTEIARRLARLTDSPFLKIEASKFTEVGYVGRDVESMVRDLVELTVTHLKVSEREAVREK 122

Query: 126 ASINAEERILDALVGKTATS-----------------------NTREVFRKKLRDGEISD 162
           A   AEERILD L+ +                           +TRE  R  LR G++ D
Sbjct: 123 AVRLAEERILDVLLPRPEGPQRADGDEPLGSHIEIVSDDDGRVSTREKLRTMLRAGKLKD 182

Query: 163 KEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + +D+E+AD S  +   F   G   +G+ N  ++F+ ++   +K++     +    E++ 
Sbjct: 183 RYVDLELADRSMPMVEIFSNSGLEEMGV-NFKDMFAGLLPKNKKRRKVKVPEAL--EMLT 239

Query: 222 DE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           DE +  L+DMD V R +++ VE  GI+FLDE DKIVA   G+G  VSREGVQRDLLP+VE
Sbjct: 240 DEEAQNLVDMDRVVRMAVEKVEQSGIIFLDEIDKIVATSKGSGPDVSREGVQRDLLPIVE 299

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TK+G++ TDHILFIASGAFH+ +P+DL+PE+QGRFP+RV L +L K +F  IL +
Sbjct: 300 GSTVMTKHGAVKTDHILFIASGAFHMCKPSDLIPELQGRFPIRVELDALGKEEFFRILIE 359

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            E+ L+LQY EL++TEG+ + F ++++  +A +A  +N+   +IGARRL T+ME +LED+
Sbjct: 360 PENALLLQYIELLRTEGVDVAFADEAVREIAAMAEEVNAGTENIGARRLHTLMEYLLEDL 419

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F A D     V ID  YV   +       D+  FIL
Sbjct: 420 LFDAPDRAGTKVAIDRAYVTDRLKTIRGNEDLSRFIL 456


>gi|16078679|ref|NP_389498.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309491|ref|ZP_03591338.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313816|ref|ZP_03595621.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318740|ref|ZP_03600034.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323011|ref|ZP_03604305.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|729777|sp|P39778|CLPY_BACSU RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|535350|gb|AAB03371.1| CodX [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633988|emb|CAB13489.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 467

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/466 (45%), Positives = 316/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQ+AK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA
Sbjct: 66  TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   S  +  F                          RK++    
Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +  +  N+ +  S +M   +KK+ +M+V+
Sbjct: 186 ALGELEDYYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++Q  E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEASKLIDMDEVGQEAVQRAEESGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 422 ILERLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467


>gi|217077876|ref|YP_002335594.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho
           africanus TCF52B]
 gi|226704532|sp|B7IE26|HSLU_THEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217037731|gb|ACJ76253.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho
           africanus TCF52B]
          Length = 459

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/456 (44%), Positives = 313/456 (68%), Gaps = 28/456 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV ELD+YI+GQ  AK+AVAIA+RNR RRQ+L  + + E+ PKNIL++GPTGVGK
Sbjct: 7   LTPKQIVEELDKYIVGQSKAKKAVAIAIRNRIRRQKLSEEWKKEITPKNILMIGPTGVGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+G+PF+K+E T+FTE+GYVG+NV+ +IR+LV++A+N+V++ +  EV E+A
Sbjct: 67  TEIARRLAQLSGSPFLKIEATRFTEVGYVGKNVDSMIRELVEIAVNMVKQQKMKEVEEKA 126

Query: 127 SINAEERILDALV--GKTATSNTREVFRKKLR-----------------------DGEIS 161
            +N EERILDALV   K        +F  ++                         GE+ 
Sbjct: 127 KLNVEERILDALVPMKKKTQIPFANIFGMQMEKPQQTDDYSENLRKREELRRRLRSGELD 186

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           ++EI+IE+  ++S I    +P    +G ++LS +   +    +K++ +M + +    L+ 
Sbjct: 187 NEEIEIEIETSNSPIGFIGLPEMEDIG-MDLSNVIGNIFPKQKKRR-KMKISEAKKVLLP 244

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
            E ++LIDMD   + ++++ +N GI+F+DE DKI A+   +G  VSR+GVQRDLLP+VEG
Sbjct: 245 IEEEKLIDMDETIQTALELAQNRGIIFIDEMDKIAAKTGSSGQDVSRQGVQRDLLPIVEG 304

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++++TKYG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF  IL + 
Sbjct: 305 TTITTKYGPVKTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLKEEDFVRILVEP 364

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           E+ L  QY+ L+ TE + L+FT+D I  LA V+  LN  + +IGARRL TV+E+VLED+ 
Sbjct: 365 ENALTKQYQALLYTENVQLEFTDDGIKELARVSYKLNQKLENIGARRLYTVLEKVLEDVL 424

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A +++EK +++DA+YV   +     + D+  +IL
Sbjct: 425 FEAPEIEEK-IIVDADYVTKKLKGIIEDEDLTSYIL 459


>gi|319646003|ref|ZP_08000233.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp.
           BT1B_CT2]
 gi|317391753|gb|EFV72550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp.
           BT1B_CT2]
          Length = 467

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ +AK+AVA+ALRNR+RR  L   LR+E++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVERLDQYIVGQLNAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+  A
Sbjct: 66  TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125

Query: 127 SINAEERILDALV-GKTATS------------------------------NTREVFRKKL 155
             NA +R++  LV G+   +                              N R+    +L
Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV +     S FD+  G+ +    +N+ +  S +M   +KK+ +++V+
Sbjct: 186 ALGELEDHYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLM-PKKKKRRKLTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD   ++++Q  E  GI+F+DE DKI A+ SG  +   VSREGV
Sbjct: 243 EARKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKI-AKKSGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+ 
Sbjct: 302 QRDILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSI 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ L+ QYK L+KTEGI L+F++D+I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LE++SF A D+  + VVI  +YV   +G      D+  FIL
Sbjct: 422 ILERLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467


>gi|78186793|ref|YP_374836.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           luteolum DSM 273]
 gi|78166695|gb|ABB23793.1| Heat shock protein HslU [Chlorobium luteolum DSM 273]
          Length = 482

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/466 (46%), Positives = 310/466 (66%), Gaps = 35/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 18  HLTPHQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQMVGDELRDEIMPNNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+
Sbjct: 78  KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 137

Query: 126 ASINAEERILDALV-----------------------------GKTATSNTREVFRKKLR 156
           A+   E+R+LD L+                              + A   TRE  R++LR
Sbjct: 138 AASLVEDRLLDILLPPVQASAEQEESFPEDGEEGALLTTGEERAEDANRRTREKMRQRLR 197

Query: 157 DGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            G++ +++I+++V+ D+   +     P G    I  + +     +   RKK+ R+S+   
Sbjct: 198 GGKLEERQIEMDVSGDSQGGMMQIFGPLGQMEEIGGIMQDLMSGLPRKRKKR-RVSIADA 256

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQ 272
              L ++E  +LIDMD+V +++I  VE  GIVF+DE DKI A  +G G     VSREGVQ
Sbjct: 257 RRILEQEEVQKLIDMDSVVKEAITKVEQSGIVFIDEIDKIAAPSTGAGTKGPDVSREGVQ 316

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + 
Sbjct: 317 RDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEE 376

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF LILT   + LI QY+ L+ TEG+ L+FTE SI  +A  A  +N +V +IGARRL T+
Sbjct: 377 DFFLILTQPRNALIKQYRALIGTEGVELEFTEGSIREIARTAAVVNESVENIGARRLHTI 436

Query: 393 MERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           M  +LE++ F    +L    + ID + V+  +    S+ D+  +IL
Sbjct: 437 MTNLLEELMFDIPENLSSGKITIDEKMVKDKLSHVASDRDLSQYIL 482


>gi|299536756|ref|ZP_07050064.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           fusiformis ZC1]
 gi|298727768|gb|EFI68335.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           fusiformis ZC1]
          Length = 466

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/465 (44%), Positives = 307/465 (66%), Gaps = 36/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------RKK-------L 155
           A   A E I+  LV     K A  N  E+                    R K       L
Sbjct: 125 AEELANEAIVKLLVPSLRKKQAMQNPFEMLFGGKEQPTNDDSSADDGEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212
           R+G++ ++ + +EV + +  I  FD   G  + +     + ++ S +M   +KK+ R+ V
Sbjct: 185 RNGKLENEWVTVEVTEQNPSI--FDALQGTGMDMSANSGMQDMLSSLMPKKQKKR-RVQV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L  +E+++LID D V +++I   E  GI+F+DE DKI +++      VSREGVQ
Sbjct: 242 KDARRILTIEEANKLIDADEVAQEAINRAEQTGIIFIDEIDKIASKEGNTSANVSREGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L K 
Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + + +LILQYK L++TEG+ + FT D+I+ +A++A  +N    +IGARRL T+
Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEIHFTTDAIERIAEIATEVNQETDNIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ER+LE++SF AS++   ++ I+A YV   +       D+  FIL
Sbjct: 422 LERLLEELSFEASEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|295706290|ref|YP_003599365.1| heat shock protein HslVU ATPase subunit HslU [Bacillus megaterium
           DSM 319]
 gi|294803949|gb|ADF41015.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           DSM 319]
          Length = 466

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/470 (44%), Positives = 310/470 (65%), Gaps = 39/470 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PR+IV +LD+YIIGQ  AK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120

Query: 123 REQASINAEERILDALVG-------------------------------KTATSNTREVF 151
           R++A  NA +RI++ LV                                +T  +  R+  
Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209
             +L  GE+ +  + IEV +     S FD+  G+ +  +  N+ +  S  M   +KK+ +
Sbjct: 181 AHQLALGELENHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNFMPKKQKKR-K 237

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VS 267
           ++V+     L  +E+ +LIDMD V ++++   E YGI+F+DE DKI A+ SGN     VS
Sbjct: 238 LTVKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKI-AQKSGNSSSADVS 296

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L 
Sbjct: 297 REGVQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELT 356

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L   DF  IL + ++ L+ QY  L++TEGI ++F++D+I  +A++A  +N    +IGAR
Sbjct: 357 KLTVEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGAR 416

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++ER+LED+SF A ++  + +VI  +YV   +       D+  FIL
Sbjct: 417 RLHTILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466


>gi|89895295|ref|YP_518782.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334743|dbj|BAE84338.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 435

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/422 (48%), Positives = 297/422 (70%), Gaps = 29/422 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V ELDRYI+GQ  AKRAVAIALRNR+RR  LP  +++E++PKNIL++GPTGVG
Sbjct: 3   QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+  + +EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122

Query: 126 ASINAEERILDALV-GKTATSNTREVF-------------------------RKKLRDGE 159
           A+  AE+R+   LV GK   +N+   F                         R++L  GE
Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + ++ I++EV D    + +F +  G  +   NL ++ + ++   R K+ +++V++    L
Sbjct: 183 LDEQVIEVEVEDNQPLLPDF-LGTGMEINT-NLQDMMAGMLPKKRHKR-KVTVREARRIL 239

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ +LID D   +++I+ VE  G+VFLDE DKI  RD  +G  VSR GVQRD+LP+V
Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT
Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +S+LI QY  L++TEGI ++FTE++ID LA VA  +NS   +IGARRL T++ERVLE+
Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419

Query: 400 IS 401
           +S
Sbjct: 420 LS 421


>gi|124004895|ref|ZP_01689738.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina
           ATCC 23134]
 gi|123989573|gb|EAY29119.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina
           ATCC 23134]
          Length = 470

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/466 (44%), Positives = 307/466 (65%), Gaps = 36/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELD+YIIGQ DAK+ VAIALRNRWRR     D+R E++P NIL++G TGVG
Sbjct: 7   HLTPREIVAELDKYIIGQNDAKKQVAIALRNRWRRMNSADDMRQEIVPNNILMIGATGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ AIN+V+ S+R+ V+E+
Sbjct: 67  KTEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAINMVKASKRETVQER 126

Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155
           A+   EE ILDAL+                               +     TR+ FR+K+
Sbjct: 127 ATEIVEEIILDALIPPVRDASAQNSFTGFTMDVTPDETSSMSKDDQELNEKTRDRFREKI 186

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+GE+ +++I+I ++           PG   + ++N+ E+ + ++    KK+ ++++ + 
Sbjct: 187 RNGEMDERKIEINISQNGMGNVGMVGPGMDEMAMMNIQEMINGMLPKKSKKR-KVTIAEA 245

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273
              L+ +E ++LIDMD V  ++++  EN G++F+DE DKI AR S  G G  VSREGVQR
Sbjct: 246 RKILLEEEVNKLIDMDEVKEEALKKAENTGMIFIDEIDKI-ARGSSGGSGPDVSREGVQR 304

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLP+VEGSS++TKYG + +DHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K D
Sbjct: 305 DLLPIVEGSSINTKYGVLKSDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELSSLTKED 364

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL + ++ L  QY+ ++  EG+ L F +D+++ LA++A  +N  V +IGARRL TVM
Sbjct: 365 FYQILKEPKNALTKQYEAMLHAEGVSLAFQDDALEQLAEMAYQINLEVENIGARRLHTVM 424

Query: 394 ERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +L D  F   D+      +++  + V+  +     + D+  FIL
Sbjct: 425 SHLLNDFLFDVPDVIGPNAKILVTKDMVQEKLAGLVQDKDLSQFIL 470


>gi|312898770|ref|ZP_07758159.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera
           micronuciformis F0359]
 gi|310620201|gb|EFQ03772.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera
           micronuciformis F0359]
          Length = 470

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/471 (46%), Positives = 305/471 (64%), Gaps = 45/471 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV++L++YIIGQ  AK++VA+ALRNRWRR++L A+L+ E++PKNILL+GPTGVG
Sbjct: 6   NLTPKEIVAQLNKYIIGQDGAKKSVAVALRNRWRRKKLSAELQKEIIPKNILLIGPTGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV--RESRRDEVR 123
           KT I+RRLA L GAPF+KVE TK+TE+GYVGR+VEQ+IRDL+  AI +V  RESRR E  
Sbjct: 66  KTEIARRLADLTGAPFVKVEATKYTEVGYVGRDVEQMIRDLLTNAIRMVQERESRRFE-- 123

Query: 124 EQASINAEERILDALVGK----------------------------------TATSNTRE 149
           E+A   A  RIL     K                                  T  S  R 
Sbjct: 124 EKAEAEANNRILQVFWPKKETVKEAVTDPVSFLFGNSEGEEEKKESDMPSETTGMSERRR 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKK 206
              +++  GE  D+EI++EVA+    +    + G ++  + N    F +++G+    +KK
Sbjct: 184 QMAERIASGEWDDREIEVEVAEADRAVQGI-LTGNSTEELTNN---FQEMLGNLVPKKKK 239

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           K +M+V K       +E  +L+DMD +   +I+  E  GIVF+DEFDKI  +   NG  V
Sbjct: 240 KKKMTVAKARELFKEEELGKLLDMDIIIEKAIEATEETGIVFIDEFDKIAEKGRSNGPDV 299

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L
Sbjct: 300 SREGVQRDILPIVEGATVTTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVEL 359

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           +SL   DF+ ILT+   +L+ QY  L+  +   L+FTED ID +A+ A ++N    +IGA
Sbjct: 360 QSLTVEDFKRILTEPSQSLLKQYTALLGADNTELEFTEDGIDMMAEYAHHVNEETENIGA 419

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++ER+LEDISF     + K + ID ++V   +G   ++ DM  +IL
Sbjct: 420 RRLHTILERILEDISFDTPYEEAKKIRIDRDFVSEKLGKVVTDVDMSRYIL 470


>gi|225181365|ref|ZP_03734809.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167946|gb|EEG76753.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter
           alkaliphilus AHT 1]
          Length = 468

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/465 (44%), Positives = 312/465 (67%), Gaps = 36/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++PR+IV ELD+YI+GQ+DAK+ VA+ALRNR+RR++LP ++RDE+ PKNI+++GPTGVGK
Sbjct: 6   WTPRQIVGELDKYIVGQRDAKKCVAVALRNRYRRKRLPDEIRDEVFPKNIIMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV+  + + V+E+A
Sbjct: 66  TEIARRLAKLVNAPFVKIEATKFTEVGYVGRDVETMVRDLVETAIRIVQTEKMEGVKEKA 125

Query: 127 SINAEERILDALVG----KTATSN------------------------------TREVFR 152
            + AEE +LD L      +  T+N                               ++  R
Sbjct: 126 RVMAEESLLDLLAPAPKRQQQTNNPLSMLFPATDEEDSKDEEDDYNNRRQEHQENKQRLR 185

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ +++EV +    +  F   G   +GI N  +L  +     +KK  +M V
Sbjct: 186 EKLAAGLLEDETVELEVDERPPMVEVFSGSGMEDMGI-NFQDLMGQFFPK-KKKMRKMPV 243

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L ++E+ +LIDMD V  +++   E  GI+FLDE DKI  +D G+G  VSREGVQ
Sbjct: 244 SQARKILQQEEAQKLIDMDEVVGEAVTRAEQSGIIFLDEIDKIAGKDYGSGPDVSREGVQ 303

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG++ TD ILFIA+GAFHV++P+DL+PE+QGRFP+RV L +L+++
Sbjct: 304 RDILPIVEGSTIMTKYGAVKTDFILFIAAGAFHVAKPSDLIPELQGRFPIRVELDNLSEA 363

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT+  + LI QY  L++TEGI ++F  ++I  +A +A  LN  + +IGARRL T+
Sbjct: 364 DFQQILTEPANALIKQYTALLETEGIQVEFAPEAIAEIAKMARKLNDEMENIGARRLHTI 423

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E+VLE++SFSA +L  + + I + YV+  + D     D+  +IL
Sbjct: 424 LEKVLEELSFSAPELGTQVIPITSRYVQDKLKDIVQNKDLSRYIL 468


>gi|153005547|ref|YP_001379872.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029120|gb|ABS26888.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp.
           Fw109-5]
          Length = 465

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/462 (46%), Positives = 319/462 (69%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SP+EIV+ELDR+++GQ  AKRAVAIALRNRWRRQ++  +L+DE++PKNI+++GPTGVG
Sbjct: 5   DLSPKEIVAELDRHVVGQGKAKRAVAIALRNRWRRQKVGPELKDEILPKNIVMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ ++RDLV+ A+ +V+E   +++RE+
Sbjct: 65  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDAMVRDLVEAAVKLVKEEEVEKLRER 124

Query: 126 ASINAEERILDALVG--------KTATSNTR--------------EVFRKKLRDGEISDK 163
           A   AEE++LDAL          ++A S  R              E  R +LR G + D 
Sbjct: 125 AREAAEEKVLDALGYGGGLGLGFRSAVSRVRGESEAEPPSQGGGRERARAQLRAGTLDDD 184

Query: 164 EIDIEVADTSSDISNFDIPGGASV--------GILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +++E+ +    +  F  PG   +        G L  + + S + G  +K+K ++ V++ 
Sbjct: 185 AVEVELVEKPPPLP-FMAPGMEDMAQGLQDMMGQLGNNPIVSMLGGGPKKRKRKLKVKEA 243

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L ++E+ RL+DMD V R+++   +N GI+F+DE DKI  RD+G+G  VSR GVQRDL
Sbjct: 244 LDLLTQEEAARLVDMDRVVREALDRAQNAGIIFIDEIDKIAGRDAGHGPDVSRGGVQRDL 303

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TKYG + TDH+LFIA+GAFHVS+ +DL+PE+QGRFP+RV L+ L + D  
Sbjct: 304 LPIVEGSNVNTKYGMVKTDHMLFIAAGAFHVSKVSDLIPELQGRFPIRVELEPLGREDLV 363

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  S+L+ QY  L+ TEG+ + F +D+++ +A +A ++N  + +IGARRL TVMER
Sbjct: 364 RILREPRSSLVRQYTALLATEGVDVQFRDDAVEEIARIAADVNERMENIGARRLHTVMER 423

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L+ ISF A DL+ + +V+DA YVR  +     + D+  +IL
Sbjct: 424 LLDAISFDAPDLRGQRIVVDAAYVRERLAGIAEDEDLARYIL 465


>gi|218961141|ref|YP_001740916.1| molecular chaperone and ATPase component of HslUV protease
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729798|emb|CAO80710.1| molecular chaperone and ATPase component of HslUV protease
           [Candidatus Cloacamonas acidaminovorans]
          Length = 454

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/450 (46%), Positives = 294/450 (65%), Gaps = 21/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV ELD+YIIGQ  AKR VAIALRNRWRRQQ+  D++ E+MP NI+L+GPTG+GK
Sbjct: 7   LTPKRIVEELDKYIIGQDQAKRCVAIALRNRWRRQQISGDIKGEIMPNNIILIGPTGIGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++RL  APFIKVE +KFTE+GYVGR+VE ++R+L++ A++ VRE+  +EVR +A
Sbjct: 67  TEIARRISRLTNAPFIKVEASKFTEVGYVGRDVESMVRELMNYAVSQVREAMIEEVRPEA 126

Query: 127 SINAEERILDALVG-----KTATSNT-----------REVFRKKLRDGEISDKEIDIEVA 170
             NA E ILD L+      K   +NT           RE  RKKL  G + +KEI++E  
Sbjct: 127 EKNATEMILDILLPRSKKMKQNANNTDTPEYERYLRSREKMRKKLLSGSLDEKEIEVE-- 184

Query: 171 DTSSDISNFDIPGGASVGILN--LSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRL 227
             + ++ NF+I  G  + +L+  +SE+ S +  G G  +K++ +V   +   + +E +RL
Sbjct: 185 PETDNLPNFEIFPGPGLELLDFDISEMISNIFQGKGTPRKVKTTVHSAWKLYVENEINRL 244

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           I  D +   +   VE  GI+F+DE DKI   D   GI VSR GVQRDLLP+VEGS V TK
Sbjct: 245 ISKDKLVETAKMAVEENGIIFIDEIDKIANTDKQVGIDVSRSGVQRDLLPIVEGSKVPTK 304

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I+T HILFIA+GAF+ ++P+DL+PE+QGRFP+RV L SL + DF  ILT+ E++L  
Sbjct: 305 YGMIDTSHILFIAAGAFNTAKPSDLIPELQGRFPIRVELNSLTQEDFERILTEPENSLTK 364

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ + ++EG+ L F  ++I  +A  A   N  + DIGARRL TVM ++L+D  F     
Sbjct: 365 QYQAIFRSEGVELKFMPEAIREIARFAALANEKMEDIGARRLHTVMNKLLDDFLFEMPSE 424

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             K+V I  + V  H+       D+  FIL
Sbjct: 425 TLKSVKITKKMVTEHLSPVIESEDLSRFIL 454


>gi|258514512|ref|YP_003190734.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778217|gb|ACV62111.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 465

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/465 (46%), Positives = 307/465 (66%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+ V+ELD+YI+GQ  AK++V+IALRNR+RR +L  D+RDE++PKNIL++GPTGVG
Sbjct: 3   DLTPRQTVAELDKYIVGQNKAKKSVSIALRNRYRRSKLSEDMRDEILPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL+RL  APFIK+E TKFTE+GYVGR+VE +IRDL++++I +VR  +   V E+
Sbjct: 63  KTEIARRLSRLVQAPFIKIEATKFTEVGYVGRDVESMIRDLLEISIRMVRREKMSLVEER 122

Query: 126 ASINAEERILDALVGKTAT-------------SNT-------------------REVFRK 153
           A   AEERI++ L    A               NT                   RE  R+
Sbjct: 123 AQKIAEERIVELLAPMPAQEKQPRNPLEMLFGGNTQNEEESKSQQQYKKRIGFERETLRE 182

Query: 154 KLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KL  GE+  + ++IEV D  S +   F   G   +GI N+ ++        +KKK R++V
Sbjct: 183 KLSRGELEQEFVNIEVEDNGSPMLEVFSGSGMEEIGI-NVQDVLGGFF-PKKKKKRRVTV 240

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L + E+  LIDMD V   +I+  E  GI+FLDE DKI  +DS  G  VSR GVQ
Sbjct: 241 AEARKILTQQEAQNLIDMDEVTSQAIKRAEEQGIIFLDEIDKIAGKDSSGGPDVSRGGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TD++LFIA+GAFH+S+P+DLLPE+QGRFP+RV L+SL+++
Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDYMLFIAAGAFHISKPSDLLPELQGRFPIRVELESLSEA 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + LI QY EL+ TEG+ + F+++S+  +A +A  +N    +IGARRL T+
Sbjct: 361 DFLQILTEPRNALIKQYTELLATEGVKIKFSQNSLVEIAKIAYTVNMQTENIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED SF A ++  +++ ID +YVR  + D     D+  +IL
Sbjct: 421 LEKLLEDYSFEAPEISGQSIEIDEDYVRYKLKDVLLNEDLSRYIL 465


>gi|226227909|ref|YP_002762015.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas
           aurantiaca T-27]
 gi|226091100|dbj|BAH39545.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas
           aurantiaca T-27]
          Length = 464

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/452 (46%), Positives = 302/452 (66%), Gaps = 22/452 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELDRYI+GQ +AK+AVAIALRNRWRRQ+ P  +R+E+ P NI+L+GPTGVG
Sbjct: 15  ELTPRQIVAELDRYIVGQANAKKAVAIALRNRWRRQRAPESIREEISPNNIILIGPTGVG 74

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE ++RDL++ AI++VR  R  EV + 
Sbjct: 75  KTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMVRDLIENAIDMVRTEREAEVEDL 134

Query: 126 ASINAEERILDALVGKTATSN-------------------TREVFRKKLRDGEISDKEID 166
           AS   ++RILD L+     +                    TRE  +  L DG++  +E++
Sbjct: 135 ASEKVDDRILDLLLPMPPVAQGDTPDVRAEYEAAVERHKRTREKLKALLLDGQLESRELE 194

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EV  +   +     PG    G+ ++++ F  +M   RKKK  + V +    L+ +E ++
Sbjct: 195 LEVTQSGPRMPGAATPG-VPEGMESVADWFRDMM-PKRKKKRTVKVSEARRILLDEELEK 252

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           LID+D V  D+++  E  GI+FLDE DKI  AR  G+G  VSREGVQRDLLP+VEGS+V 
Sbjct: 253 LIDLDDVTSDALERAEAMGIIFLDEVDKIAGARGQGSGPDVSREGVQRDLLPIVEGSNVQ 312

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG + TDH+LF+A+GAFHV++P+DL+PE+QGRFP+RV L +L ++DF  I+T+ E+ L
Sbjct: 313 TKYGMVKTDHVLFVAAGAFHVAKPSDLIPELQGRFPIRVELDALTEADFVRIMTEPENAL 372

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY  L++ EG  L F ED +  LA VA  +N  + +IGARRL TVM  +LED+ +   
Sbjct: 373 TKQYTALVEAEGATLTFAEDGVAELARVAARVNERMENIGARRLHTVMTTLLEDVLYELP 432

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D  +  V++DA  VR  +     + D+  +IL
Sbjct: 433 DRGKDPVLVDATMVRDRLRAISEDEDLRKYIL 464


>gi|189500376|ref|YP_001959846.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           phaeobacteroides BS1]
 gi|189495817|gb|ACE04365.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeobacteroides BS1]
          Length = 490

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/466 (46%), Positives = 310/466 (66%), Gaps = 38/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVS LD+YIIGQQDAK+AVAIALRNR RRQ +  DLRDE+MP NI+L+GPTGVGK
Sbjct: 28  MTPSQIVSRLDKYIIGQQDAKKAVAIALRNRLRRQHVSDDLRDEIMPNNIILIGPTGVGK 87

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL D A+++VR  + +EV+E+A
Sbjct: 88  TEIARRLAKLANAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVSMVRSEKSEEVKEKA 147

Query: 127 SINAEERILDALVG----------------------------KTATSNTREVFRKKLRDG 158
           ++ AEER+LD L+                             K     +RE   ++LR G
Sbjct: 148 ALLAEERLLDILLPPVPGSAYDSDNDDEEITSTEEASDADLEKAVNRKSREKMLERLRSG 207

Query: 159 EISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKC 215
            + D++I++E+ +D+   +     P G    +  L  L   +M     ++K  R+++ + 
Sbjct: 208 RMEDRQIEMELSSDSQGGMMQIFGPMGQ---MEELGGLMQDLMSGLPKKRKNRRVTIAEA 264

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQ 272
              L ++E  +LIDMD V +++++ VE  GIVF+DE DKI A  +G+   G  VSREGVQ
Sbjct: 265 RKLLEQEEVQKLIDMDAVIKEAVKKVEESGIVFIDEIDKIAAPTTGSGGKGPDVSREGVQ 324

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + 
Sbjct: 325 RDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEE 384

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT  ++ LI QYK L+ TEG+ L+F++D+I  +A +A  +N +V +IGARRL T+
Sbjct: 385 DFYKILTQPKNALIKQYKALLMTEGVTLEFSDDAIVEIAAIAAQVNESVENIGARRLHTI 444

Query: 393 MERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437
           M  +LE++ FS  +      + ID   V   +    ++ D+  +IL
Sbjct: 445 MTNLLEELMFSIPEQHSNEKIDIDKSMVNDKLSKIITDRDLSQYIL 490


>gi|300870913|ref|YP_003785784.1| ATP dependent protease HslVU/ClpYQ ATPase subunit [Brachyspira
           pilosicoli 95/1000]
 gi|300688612|gb|ADK31283.1| ATP dependent protease HslVU/ClpYQ, ATPase subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 453

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/451 (44%), Positives = 306/451 (67%), Gaps = 18/451 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP +L+DE+ PKNI+L+GP
Sbjct: 6   KLESELTPRRIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEELKDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+ AI  ++ S   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNAAIFELKTSMMKE 125

Query: 122 VREQA--------------SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           V ++A              S+  E+  + +        N +E  +K++ +G+  +  ++I
Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEDNEIISDEEAEKKKNAKEQIKKRIANGDFDESYVEI 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDR 226
           +++     +    IPG        +  +   +M   +K KK+R+   K Y  L+ + S+ 
Sbjct: 186 KISSNQGRMFGI-IPGMGFEENDMIQSMVGSIMPQNKKNKKLRVKEAKKY--LINEASES 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           LIDM+ V  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+T
Sbjct: 243 LIDMEKVTSDALSLAENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNT 302

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ + 
Sbjct: 303 KYGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKEDFKDILINPKNAIT 362

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+EL+KTEG+ ++F +++++ +AD+A N+N+ V +IGARRL T+ME+V E+ISFSA +
Sbjct: 363 KQYQELLKTEGVTIEFEDEALEKIADLAYNINTNVENIGARRLYTIMEKVFEEISFSADE 422

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + + I ++ V+  + D     D+  +IL
Sbjct: 423 HSGEFIKITSDNVKEAVKDIEENRDISRYIL 453


>gi|302338073|ref|YP_003803279.1| heat shock protein HslVU, ATPase HslU [Spirochaeta smaragdinae DSM
           11293]
 gi|301635258|gb|ADK80685.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           smaragdinae DSM 11293]
          Length = 447

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/455 (46%), Positives = 310/455 (68%), Gaps = 26/455 (5%)

Query: 1   MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           MK  F+  +PR+IV+ELD+YI+GQ+ AK+AVAIALRNR RR+ L  +LRDE+ PKNI+++
Sbjct: 1   MKQDFDTMTPRQIVTELDKYIVGQEKAKKAVAIALRNRVRRRMLAENLRDEIAPKNIIMI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RRL+RL+GAPFIKVE TK+TE+GYVGR+VE ++RDL+ V++N+V+    
Sbjct: 61  GPTGVGKTEIARRLSRLSGAPFIKVEATKYTEVGYVGRDVESMVRDLMAVSLNMVKAEMS 120

Query: 120 DEVREQ--------------ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           + V+E+                I  +  + +   G+ AT   RE FR  LR+G++ DK +
Sbjct: 121 EGVKEEAENRAEEALLDLLLPGIGGDPSVPEVGGGQGAT---REKFRTMLREGKLDDKLV 177

Query: 166 DIEVADTSS---DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           +++V+  S    ++ +   P    V   NL  +F    G G+K+K R+ V++    L+ +
Sbjct: 178 EVQVSGGSFPTIEVFSGQSPEAMDVNFGNLGSIF----GGGKKRK-RVRVEQAKKILLDE 232

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E D+LID +     + +  E  GI+F+DE DK+  +    G  VSREGVQRD+LP+VEGS
Sbjct: 233 EMDKLIDTERAGDIARERCEQMGIIFIDEIDKVAVKSDQGGADVSREGVQRDILPIVEGS 292

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V+TKYG I+T HILFIA+GAFH S+P+DL+PE+QGRFP+RV L  L+  DF  ILT+ E
Sbjct: 293 TVNTKYGMIDTSHILFIAAGAFHTSKPSDLIPELQGRFPLRVELDDLDADDFVRILTEPE 352

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QY EL+KTEG+ ++FT+ +I  L+++A  +N+   +IGARRL T+ME +LE++SF
Sbjct: 353 NALTRQYIELLKTEGVDIEFTDPAIRKLSEIAAEVNARTENIGARRLHTIMELLLEEVSF 412

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +A +L+ + + I  EYV   +GD   + D+  +IL
Sbjct: 413 TAPELKGQKIPITPEYVESQLGDIVQDQDLARYIL 447


>gi|294500944|ref|YP_003564644.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           QM B1551]
 gi|294350881|gb|ADE71210.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           QM B1551]
          Length = 466

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 308/469 (65%), Gaps = 37/469 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PR+IV +LD+YIIGQ  AK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120

Query: 123 REQASINAEERILDALVG-------------------------------KTATSNTREVF 151
           R++A  NA +RI++ LV                                +T  +  R+  
Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209
             +L  GE+ +  + IEV +     S FD+  G+ +  +  N+ +  S  M   +KK+ +
Sbjct: 181 AHQLALGELENHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNFMPKKQKKR-K 237

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSR 268
           ++V+     L  +E+ +LIDMD V ++++   E YGI+F+DE DKI  + + +    VSR
Sbjct: 238 LTVKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKIAQKSANSSSADVSR 297

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L  
Sbjct: 298 EGVQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELTK 357

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  IL + ++ L+ QY  L++TEGI ++F++D+I  +A++A  +N    +IGARR
Sbjct: 358 LTVEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGARR 417

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+SF A ++  + +VI  +YV   +       D+  FIL
Sbjct: 418 LHTILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466


>gi|228916466|ref|ZP_04080032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228843045|gb|EEM88127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 453

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/458 (44%), Positives = 306/458 (66%), Gaps = 38/458 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR
Sbjct: 1   MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 61  MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120

Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162
           R+++ LV                 G T  SN              R+   +KL  G + D
Sbjct: 121 RLIEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 180

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219
           + + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK ++SV++    L
Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 236

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+V
Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL 
Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED
Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|228935143|ref|ZP_04097970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947548|ref|ZP_04109838.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228812068|gb|EEM58399.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824508|gb|EEM70313.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 453

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/458 (44%), Positives = 306/458 (66%), Gaps = 38/458 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR
Sbjct: 1   MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 61  MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120

Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162
           R+++ LV                 G T  SN              R+   +KL  G + D
Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 180

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219
           + + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK ++SV++    L
Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 236

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+V
Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL 
Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED
Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|124516258|gb|EAY57766.1| Heat shock protein HslU [Leptospirillum rubarum]
 gi|206603099|gb|EDZ39579.1| Heat shock protein HslU [Leptospirillum sp. Group II '5-way CG']
          Length = 444

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 295/437 (67%), Gaps = 8/437 (1%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            F ++P +IV  LDRYIIGQ DAK+AVA+A+RNR RR+++   +++E++P+NIL++G TG
Sbjct: 13  AFPWTPGDIVRYLDRYIIGQGDAKKAVAVAIRNRVRRERVSGPMKEEILPRNILMIGATG 72

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT I+RRL+RL  APF+KVE TK+TE+GYVGRNVE +IRDL +VA N      RD VR
Sbjct: 73  SGKTEIARRLSRLLNAPFLKVEATKYTEVGYVGRNVESMIRDLAEVAYNEGLSRERDLVR 132

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           E A  +  ER+LDAL+       TR     +L  G++ D+E++I + +TS        P 
Sbjct: 133 EDALKDVRERLLDALLPGGGQEATRSRLASRLDAGDLEDREVEILLRETSGGP-----PT 187

Query: 184 GASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           G S       E   +++GS    R+ + R++++   P L+ + +D  +D   V R+++  
Sbjct: 188 GGSDWGEGSPEGMREMLGSILPPRQIRRRLAIRDARPLLLAEAADARVDAGKVSRETVAR 247

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GI+F+DE DK++ R    G  VSREGVQRDLLP+VEGSSV T++G + TD ILFIA
Sbjct: 248 VEESGILFIDEIDKVIPRSGSVGADVSREGVQRDLLPIVEGSSVRTRHGIVRTDRILFIA 307

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAFH +RP+DL+PE QGRFPVRV L +L   +   ILT+TE +L+ QYK L++TEG+IL
Sbjct: 308 AGAFHHARPSDLIPEFQGRFPVRVTLTALGSPELYRILTETEGSLVSQYKALLETEGVIL 367

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DF ED +  +A+VA  +N    +IGARRL TVME +LED+SF A ++  +TVVID  +V+
Sbjct: 368 DFREDGLREIAEVAWQVNEGTQNIGARRLFTVMEHLLEDVSFRAPEMAGQTVVIDRPFVQ 427

Query: 421 LHIGDFPSETDMYHFIL 437
             +G    + D+  +IL
Sbjct: 428 ERLGKLVLDPDLTRYIL 444


>gi|110597421|ref|ZP_01385708.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340965|gb|EAT59436.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           ferrooxidans DSM 13031]
          Length = 494

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/469 (44%), Positives = 312/469 (66%), Gaps = 38/469 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 27  NLTPNQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVSDELRDEIMPNNIIMIGPTGVG 86

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+
Sbjct: 87  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 146

Query: 126 ASINAEERILDALVGKTATSN-------------------------------TREVFRKK 154
           A++  EER+LD L+   A S                                +R    ++
Sbjct: 147 AALLVEERLLDILLPPVAQSQESLDDDAETEGEALLSLSTEEGDPSVEANRRSRRKMLER 206

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           LR G++ D++I+++++  SS      I  P G    I  + +     +   RKK+ R+S+
Sbjct: 207 LRSGKLEDRQIEMDISSDSSGGGMMQIFGPLGQMEEIGGMMQDLMSGLPRKRKKR-RVSI 265

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSRE 269
            +    L ++E  +LIDM++V +++I  VE  GIVF+DE DKI A  +G    G  VSRE
Sbjct: 266 AEARKLLEQEEVQKLIDMESVVKEAINKVEQSGIVFIDEIDKIAAPSTGAGGKGPDVSRE 325

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL
Sbjct: 326 GVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSL 385

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF LILT  ++ LI QY  L+ TEG+ L F+E +I  +A +A  +N +V +IGARRL
Sbjct: 386 TEEDFFLILTQPKNALIKQYTALLATEGVELSFSEGAIREIARIAAKVNESVENIGARRL 445

Query: 390 QTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++  +LE++ F+   ++ ++ + ID   V+  +    ++ D+  +IL
Sbjct: 446 HTILTNLLEELMFNIPENVSDEKIEIDEAMVKEKLNHVVADRDLSQYIL 494


>gi|329929331|ref|ZP_08283084.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp.
           HGF5]
 gi|328936700|gb|EGG33143.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp.
           HGF5]
          Length = 468

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/466 (43%), Positives = 316/466 (67%), Gaps = 36/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTEDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124

Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156
           A   A ERI+  L     G+ +  N  E+                          R+++R
Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184

Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
                G++ D+ I+I+V D + ++ + F   G   +G +N+ E+F  +M   R K+ ++S
Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGV
Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSL 362

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T
Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHT 422

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A +L    +VI  +YVR  +     + D+  +IL
Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468


>gi|325971101|ref|YP_004247292.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta
           sp. Buddy]
 gi|324026339|gb|ADY13098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta
           sp. Buddy]
          Length = 459

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 303/455 (66%), Gaps = 31/455 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV ELD+YIIGQ+ AKR +A+A+RNR RR++LP ++RDE+ PKNI+++GPTGVGK
Sbjct: 12  LKPSEIVKELDKYIIGQKQAKRTIAVAIRNRTRRKRLPLEIRDEVSPKNIIMIGPTGVGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L+ APFIKVE TK+TE+GYVGR+VE IIRDL+ +A+  V+    +   E+ 
Sbjct: 72  TEIARRIAKLSNAPFIKVEATKYTEVGYVGRDVESIIRDLMSIAVQQVKAELAERELEKV 131

Query: 127 SINAEERILDAL--------------VGKTATSN---TREVFRKKLRDGEISDKEIDIEV 169
               EER+LD L              VG + T +   TRE FR+ LRDG+  ++E++I V
Sbjct: 132 QNRVEERLLDILLPQVKEDPSVDIIAVGSSYTDSQKVTRERFRQMLRDGKFDEREVEINV 191

Query: 170 ADTSSDISNFDIPGGASVGILNLSEL------FSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                        G   +G  N+ EL         + G+G+    +++V++       +E
Sbjct: 192 QSRKR-------VGIEVLGQPNMEELQEAMQSIGSIFGNGKAHNRKLTVKRAREIFTEEE 244

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGS 282
           +D+ +D D    ++ + VE  GIVF+DE DK+  +  SG GI VSREGVQRD+LP++EG+
Sbjct: 245 TDKAVDTDRAIDEAKERVEQMGIVFIDEIDKVAKSGGSGGGIDVSREGVQRDILPIIEGT 304

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           SVSTK+G I+T HILFIASGAFHVS+P+DL+PE+QGRFP+RV L  L   DF  ILT+  
Sbjct: 305 SVSTKWGVIDTTHILFIASGAFHVSKPSDLIPELQGRFPLRVELDDLKADDFYRILTEPA 364

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + + +QY+EL+KTEG+ + F +++I  ++++A  +NS+  +IGARRL T+ME++LE++SF
Sbjct: 365 NAITMQYRELLKTEGVQIIFEDEAIRRISEIAYEVNSSHDNIGARRLFTIMEKLLEELSF 424

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SA +L  +T+ I   YV   +GD     D+  FIL
Sbjct: 425 SADELTGQTIPITRAYVDERLGDVIQNQDLSKFIL 459


>gi|116328185|ref|YP_797905.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330909|ref|YP_800627.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120929|gb|ABJ78972.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124598|gb|ABJ75869.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 477

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/463 (45%), Positives = 314/463 (67%), Gaps = 35/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVGK
Sbjct: 18  LTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E A
Sbjct: 78  TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137

Query: 127 SINAEERILDALVG---------------KTATSN----------TREVFRKKLRDGEIS 161
              AEE +LD L+                KT++++          TRE  RKKL+ G++ 
Sbjct: 138 KQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKLD 197

Query: 162 DKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           D+E+++++ + S S I    + G  ++   +L      V+G    KK +    K  PE +
Sbjct: 198 DQEVELDLPNPSVSQIPMLQVFGAGNLD--DLDNQLQNVLGDLLPKKNKKRKLKI-PEAI 254

Query: 221 RD----ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           +     E+D+L+D D V R++++ VE  GI+FLDE DKI  R+  NG  VSREGVQRDLL
Sbjct: 255 KTLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLL 314

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF  
Sbjct: 315 PIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEK 374

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER+
Sbjct: 375 ILTAPRSSLARQYEALLFTDGIQLEFSSDGIQEIARIAYDMNEKHENIGARRLNTILERL 434

Query: 397 LEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LE++SF   DL E  K + ID +YV   +     + D+  +IL
Sbjct: 435 LEEVSFEGPDLPENQKNIKIDGKYVMDRLQGVIQDKDLSQYIL 477


>gi|134299827|ref|YP_001113323.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum
           reducens MI-1]
 gi|172044311|sp|A4J5Z5|HSLU_DESRM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134052527|gb|ABO50498.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           reducens MI-1]
          Length = 466

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/465 (44%), Positives = 317/465 (68%), Gaps = 36/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+ V ELD+YI+GQ+ AK+AVA+ALRNR+RR +L  DL DE++PKNIL++GPTGVGK
Sbjct: 4   LTPRQTVRELDKYIVGQEKAKKAVAVALRNRYRRSKLKEDLIDEVVPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+A
Sbjct: 64  TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKVEEVEERA 123

Query: 127 SINAEERILDALVG----KTATSNT----------------------------REVFRKK 154
              A+ERI++ L       T T N                             RE  R+K
Sbjct: 124 KRLADERIIELLAPYPNRPTQTKNPFEMLFGGVQDTQQEDKSWEQQNSRIKFERETLREK 183

Query: 155 LRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +   E+    ++IEV D S+ +   F   G   +G+ N+ ++   +    +K+K +++V+
Sbjct: 184 MSRCELEKDYLEIEVEDQSTPMLEVFSNSGVEEMGV-NMQDVLGSIFPR-KKRKRKVTVE 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272
           +    L + E+ +LIDMD +   +++  E++GI+FLDE DKI  R+   G   VSR GVQ
Sbjct: 242 EARKILTQQEAQKLIDMDELTAQAVKRAEDHGIIFLDEIDKIATREGTTGSADVSRGGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++S
Sbjct: 302 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRS 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ +++LI QY EL+ TEG+ ++F+++S+  +AD+A  +N    +IGARRL T+
Sbjct: 362 DFEQILTEPQNSLIKQYTELLGTEGLKIEFSKNSLVEIADIAYTVNEQNENIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L  +++ ID++YVR  + D  +  D+  +IL
Sbjct: 422 LEKLLEDVSFEAPELNGQSLTIDSDYVREKLKDVVTNRDLSRYIL 466


>gi|145353738|ref|XP_001421162.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|145357168|ref|XP_001422793.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|144581398|gb|ABO99455.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|144583037|gb|ABP01152.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
          Length = 542

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 293/444 (65%), Gaps = 13/444 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P    + LD++I+GQ +AKRA A+ALRNRWRR ++   +RDE++PKNIL++GPTG G
Sbjct: 100 GLTPERATALLDKHIVGQTEAKRACAVALRNRWRRHRIGKPMRDEIVPKNILMIGPTGCG 159

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  +PF+KVE TKFTE+G+ GR+V+QIIRDLVD  I + ++  R +  + 
Sbjct: 160 KTEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIRDLVDNGIAVTKQKMRAKFEKF 219

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                E +ILD + G+ A   TRE FR   RDG + D+ I++E+ D+       D P G 
Sbjct: 220 VEELIENKILDFVCGEGANDETREAFRTLYRDGTLDDRTIEVELPDSGGQNMKID-PSGG 278

Query: 186 SVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            + I  L     K+ G+ +   K +M+V +C P +   E D L+  +T+ +++I  VEN 
Sbjct: 279 PIPIHELVIKVDKLFGNRKSTSKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITAVEND 338

Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DKIV+  D  +G   S EGVQRDLLP++EGS VSTK+G++NTDHILFIASGA
Sbjct: 339 GIVFIDEIDKIVSSSDYRHGADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFIASGA 398

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH ++P+D+L E+QGR P+RV LK L + D   ILT+ E N+I Q K LMKTEGI L+FT
Sbjct: 399 FHSAKPSDMLAELQGRLPIRVELKGLTERDLYRILTEPEMNMIAQQKALMKTEGIDLEFT 458

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV---------- 413
            ++I+ +A +A  +N TV +IGARRL TV+ER++ED+SF A +   K V           
Sbjct: 459 NEAIEHIASIAAKVNKTVDNIGARRLHTVLERIVEDLSFDAPERYAKFVAAGGKGELQVK 518

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I  + +   IG+   + D+  F+L
Sbjct: 519 IGVKDIDDAIGNMLKQEDLSRFVL 542


>gi|261407988|ref|YP_003244229.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           Y412MC10]
 gi|261284451|gb|ACX66422.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           Y412MC10]
          Length = 468

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/466 (43%), Positives = 316/466 (67%), Gaps = 36/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124

Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156
           A   A ERI+  L     G+ +  N  E+                          R+++R
Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184

Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
                G++ D+ I+I+V D + ++ + F   G   +G +N+ E+F  +M   R K+ ++S
Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGV
Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSL 362

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T
Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHT 422

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A +L    +VI  +YVR  +     + D+  +IL
Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468


>gi|228966774|ref|ZP_04127818.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792873|gb|EEM40431.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 453

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/458 (44%), Positives = 307/458 (67%), Gaps = 38/458 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR
Sbjct: 1   MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 61  MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120

Query: 133 RILDALV---------------------GKTATSNT---------REVFRKKLRDGEISD 162
           R+++ LV                       + TS+T         R+   +KL  G + D
Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVERKLAAGLLED 180

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219
           + + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK ++SV++    L
Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKLL 236

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+V
Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL 
Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED
Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|332981426|ref|YP_004462867.1| heat shock protein HslVU, ATPase subunit HslU [Mahella
           australiensis 50-1 BON]
 gi|332699104|gb|AEE96045.1| heat shock protein HslVU, ATPase subunit HslU [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 306/466 (65%), Gaps = 35/466 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             ++P+EIV ELD+YIIGQ  AK+AVA+ALRNR+RR  LP ++R+E+MPKNI+++GPTGV
Sbjct: 1   MEYTPKEIVKELDKYIIGQHKAKKAVAVALRNRYRRNLLPQEMREEIMPKNIIMMGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI +V+  +  EV +
Sbjct: 61  GKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVEVAIRMVKNQKMSEVAD 120

Query: 125 QASINAEERILDALV----GKTATSNTREVF----------------------------R 152
           +A   AEER+LD L+     + +  N  E F                            +
Sbjct: 121 RAKQLAEERLLDVLLPPRRKRNSGKNPLEAFFGGQGAEDKEDEESETLIDNSADGRLRMK 180

Query: 153 KKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           + L  GE+  + I+IEV D + S +  F   G   + I N+ ++F  +     KK+ R++
Sbjct: 181 EMLDAGELDGRYIEIEVQDNAVSGMGIFSAIGMDDLAI-NMQDMFGNLFPKKTKKR-RVT 238

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++      ++E+ +LIDMD V  +++   E  GI+F+DE DK+  R+ G G  VSREGV
Sbjct: 239 VKEARRIFEQEEAQKLIDMDEVTEEALNKAEQEGIIFIDELDKVAGREGGAGPDVSREGV 298

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEG++V TKYG + TD++LFIA+GAFHV++ +DL+PE+QGRFPV V L SL++
Sbjct: 299 QRDILPIVEGTTVMTKYGPVKTDYMLFIAAGAFHVAKVSDLIPELQGRFPVLVQLDSLSQ 358

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF+ ILT  ++ LI QYK LM  + + L+FT+D+ID +A +A  +N    +IGARRL T
Sbjct: 359 QDFKQILTQPQNALIKQYKALMSADNLELEFTDDAIDEIARMAYVINENNENIGARRLHT 418

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           VMER+LEDIS+         +++D  YV+  + +   + D+  +IL
Sbjct: 419 VMERLLEDISYEMPVSGGNEIIVDKAYVQGVLKETVQDKDISKYIL 464


>gi|251797450|ref|YP_003012181.1| heat shock protein HslVU, ATPase HslU [Paenibacillus sp. JDR-2]
 gi|247545076|gb|ACT02095.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           JDR-2]
          Length = 467

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 312/463 (67%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PR+IV+ELD+YI+GQ+ AKR+VAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   FTPRQIVAELDKYIVGQKPAKRSVAIALRNRYRRSMLDETLRDEIVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  + + V+++A
Sbjct: 66  TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAEKTEAVQDKA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
              A ER++  LV  K     ++  F                          R + RD  
Sbjct: 126 EKLANERLVSLLVPSKVKEKQSKNPFEMLFGNQQNNKETVEEPEQDNVVISKRSQARDDL 185

Query: 158 --GEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             G++ ++ +++E+ D S  + +     G   +G +N+ ++  + M    K++ +++V++
Sbjct: 186 AAGKLENEIVEVEIEDNSPTMLDMLGGQGPDGLGGMNMQDMLGQFMPKKTKQR-KLAVKE 244

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L+++E+++LI+MD V  +S+   E  GI+F+DE DKI +   GNG  VSREGVQRD
Sbjct: 245 ARKVLIQEEANKLINMDDVIAESVSRAEQTGIIFIDEIDKIASPSRGNGPDVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TD++LFIA+GAFHV++P+DL+PE+QGRFP+RV L SL+  DF
Sbjct: 305 ILPIVEGSTVVTKYGPVKTDYVLFIAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLEDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L  QY  L++TEGI ++F++++I  +A +A +LN    +IGARRL T++E
Sbjct: 365 VSILTEPKNALTKQYAALLQTEGIAIEFSDEAIKEIASIAADLNRNTENIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A D+    +VI  EYVR  +G      D+  +IL
Sbjct: 425 KLLEDLSFEAPDITLDHMVITPEYVREKVGGIAKNRDLSQYIL 467


>gi|168067862|ref|XP_001785823.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662525|gb|EDQ49367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 593

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/469 (44%), Positives = 302/469 (64%), Gaps = 39/469 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQQ+AKRAVA+ALRNRWRR ++P   R+E++PKNIL++GPTG GK
Sbjct: 126 LTPVKVVEMLDRYIVGQQEAKRAVAVALRNRWRRHRIPEAFREEIVPKNILMIGPTGCGK 185

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 186 TEIARRLAKIAYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIALQRQKMRAKLVKEV 245

Query: 127 SINAEERILDALV-------------------------------GKTATSNTR---EVFR 152
               E R+LD  +                               G++     R   E FR
Sbjct: 246 ENVVEARLLDIFISRQLPPVEVSPIETWPPALNIGQVGSASRVEGESPVPEARVDYEAFR 305

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIR 209
           +  RDG + +++I +++ D  S +   +I G +  G+  L        K + S R +++ 
Sbjct: 306 QLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVFRLPQMEKFLKSQRMERME 364

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSR 268
           +++    P L   E ++ +++D + +D+I + E+ GIVF+DE DKIV   ++  G   S 
Sbjct: 365 ITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDEIDKIVTNHETRYGADASS 424

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP++EGS VSTKYG++NTDHILFI SGAFH  +P+D+L E+QGR P+RV LK 
Sbjct: 425 EGVQRDLLPIIEGSVVSTKYGNVNTDHILFICSGAFHSCKPSDMLAELQGRLPIRVELKG 484

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + D   ILT+ E+N+I Q + LMKTE I L FT+D+I+ LA VA  +N +V +IGARR
Sbjct: 485 LGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEELAKVAAEVNRSVDNIGARR 544

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L TV+ERV+EDISF A +   +T  ID E V+  +GDF  + D+  F+L
Sbjct: 545 LHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKADLSRFVL 593


>gi|317129214|ref|YP_004095496.1| heat shock protein HslVU, ATPase HslU [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474162|gb|ADU30765.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           cellulosilyticus DSM 2522]
          Length = 465

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 306/467 (65%), Gaps = 34/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PR+IV +L+++I+GQ  AK++VA+ALRNR+RR QL   LR+E+ PKNIL++GPT
Sbjct: 1   MSETLTPRQIVEKLNQFIVGQDKAKKSVAVALRNRYRRSQLDEGLREEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ +I IV+E +   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRIVKEEKMARV 120

Query: 123 REQASINAEERILDALV-GKTATSNTREVFR----------------------------- 152
           + QA  NA  R++  LV  +   SN R                                 
Sbjct: 121 KVQAERNANHRLVALLVPTQKKESNYRNPLEMLFQGNQTEDQDTEDEREEESVKDRRRRV 180

Query: 153 -KKLRDGEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            ++L +GE+ ++ + +EV +  S+ +  F   G   +G +N+ E+   +M   +KKK ++
Sbjct: 181 TQQLANGELEEEYVTVEVDEQQSNFLDMFSGSGMEQMG-MNMQEMLGGMM-PKKKKKRKL 238

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L  DE+ +LIDM+ V +D++   E  GI+F+DE DK+  +     + VSREG
Sbjct: 239 TVKEARKVLTVDEAQKLIDMEEVTQDAVSKAEQLGIIFIDEIDKVAGKSQQQSVDVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILF+A+GAFH S+P+DL+PE+QGRFP+RV L SL 
Sbjct: 299 VQRDILPIVEGSTVVTKYGPVKTDHILFVAAGAFHFSKPSDLIPELQGRFPIRVELSSLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL D ++ LI QY+ L++TEGI L F++D+I  +A +A  +N    +IGARRL 
Sbjct: 359 VEDFVRILVDPDNALIKQYQALLETEGIKLKFSDDAIYKIALIATEVNEETENIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF AS++    VVI +EYV   + D     D+  +IL
Sbjct: 419 TILEKLLEDLSFEASEVTLDEVVITSEYVEEKLQDVAKNRDLSQYIL 465


>gi|229117315|ref|ZP_04246693.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-3]
 gi|228666215|gb|EEL21679.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-3]
          Length = 453

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/458 (44%), Positives = 305/458 (66%), Gaps = 38/458 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR
Sbjct: 1   MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 61  MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120

Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162
           R+++ LV                 G    SN              R+   +KL  G + D
Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVERKLAAGLLED 180

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219
           + + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK ++SV++    L
Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKLL 236

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+V
Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL 
Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED
Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|315648141|ref|ZP_07901242.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex
           V453]
 gi|315276787|gb|EFU40130.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex
           V453]
          Length = 468

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/466 (43%), Positives = 315/466 (67%), Gaps = 36/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ++AK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKEAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDK 124

Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156
           A   A ERI++ L     G+ +  N  E+                          R+++R
Sbjct: 125 AEELANERIVELLAPSTKGQKSQRNPFEMLFGGNNNDTQAEEEDSADKDVSLKEKRRQVR 184

Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
                G++ D  ++I+V D + ++ + F   G   +G +N+ E+F  +M   R K+ ++S
Sbjct: 185 FNLLSGKLEDDTVEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGV
Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL  
Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELSSLTL 362

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T
Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEVEFSPEAIREIAQIAASVNQNTENIGARRLHT 422

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A +L    +VI  EYVR  +     + D+  +IL
Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPEYVREKLAGIAQDRDLSQYIL 468


>gi|303253151|ref|ZP_07339300.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302647833|gb|EFL78040.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 395

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/384 (53%), Positives = 275/384 (71%), Gaps = 13/384 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L          V ++  S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLN 378
           TEG+ ++FT+D I  +A+ A  +N
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVN 381


>gi|312135859|ref|YP_004003197.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           owensensis OL]
 gi|311775910|gb|ADQ05397.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           owensensis OL]
          Length = 464

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/468 (47%), Positives = 318/468 (67%), Gaps = 39/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153
           +A    E+RIL+                  AL G T+                 RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQNYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210
           KLR GE+ DK +++EV DT      F++  G     + +S  F  + GS    +KKK +M
Sbjct: 181 KLRSGELEDKVVEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDIFGSLFPKKKKKKKM 236

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++++    L ++E ++LIDMD V R++IQ  E +GI+F+DE DKI  + S  G  VSREG
Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIREAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L 
Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL 
Sbjct: 357 EEDFKKILTQPKNAIIKQYVELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416

Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 417 TVVEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|323705451|ref|ZP_08117026.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535353|gb|EGB25129.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 460

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/468 (45%), Positives = 299/468 (63%), Gaps = 46/468 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV  LD+YI+GQ  AKR+VA+ALRNR+RR  LP +++DE+ PKNIL++GPTGVG
Sbjct: 3   NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRYRRNLLPDEIKDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ +   V  +
Sbjct: 63  KTEIARRIAKLIEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122

Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158
           A   AEERILD L+    +   +  F                           R+K+R G
Sbjct: 123 AKELAEERILDYLINGRKSKRQKNPFEFLFNAQGDEDTHDDDGQEIKMQKEQLREKIRSG 182

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---------GRKKKIR 209
           E++D+ I+IE+ D+SS I       GA    +NL ++F+ ++           G  KKI 
Sbjct: 183 ELNDRIIEIEITDSSSPILEMYSNLGAEEMNINLQDMFADILPKKKKYKKVPIGEAKKI- 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
                    L  +E+  LIDMD V  ++I+  E  GI+F+DE DKI      NG  VSRE
Sbjct: 242 ---------LESEEAQNLIDMDEVIDEAIRRTEQDGIIFIDEIDKIAGSGYTNGPDVSRE 292

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L
Sbjct: 293 GVQRDILPIVEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPL 352

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL + ++ L  QY  L+ TEG+ +++T+D ID +A++A  +N    DIGARRL
Sbjct: 353 TKEDFIRILKEPKNALTKQYAALLSTEGVEIEYTDDGIDRIAEIAYIINQQSEDIGARRL 412

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TVME++ E +SF A D+    V+ID  Y+   + D  +  D+  +IL
Sbjct: 413 HTVMEKLFEKLSFEAPDITGSKVIIDKNYIDEQLKDNLNRFDVNKYIL 460


>gi|56964039|ref|YP_175770.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus clausii
           KSM-K16]
 gi|62286750|sp|Q5WFQ1|HSLU_BACSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56910282|dbj|BAD64809.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit [Bacillus
           clausii KSM-K16]
          Length = 463

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/466 (43%), Positives = 310/466 (66%), Gaps = 34/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +PREIV  L++YI+GQ  AKR+VA+ALRNR+RR +L   +R+E+ PKNIL++GPT
Sbjct: 1   MTSTLTPREIVERLNQYIVGQDGAKRSVAVALRNRYRRTKLDPSMREEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E R   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRLVKEERVALV 120

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A++R+++ LV                                  +N +    +
Sbjct: 121 KDEAKQLADKRLIELLVPSMKKETNYKNPFEMLFSQPDKEEEEDGEEELTRANLKRKMAE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMS 211
           KL+ GE+ ++ + +EV + +    +    GGA +  +  N+ E+ S +M   +KKK RM+
Sbjct: 181 KLKQGELEERTVTVEVTEQNHGFMDL-FQGGAGMEQMGMNMQEMLSNMM-PKKKKKRRMT 238

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L  +E+ +LIDMD V +++I   E  GI+F+DE DK+  ++   G  VSREGV
Sbjct: 239 VAEARGVLAEEEAQKLIDMDDVTQEAITRAEQLGIIFIDEIDKVAGKND-QGANVSREGV 297

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++PADL+PE+QGRFP+RV L+SL+ 
Sbjct: 298 QRDILPIVEGSTVVTKYGAVKTDHILFIAAGAFHMAKPADLIPELQGRFPIRVELQSLSV 357

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L  QY+ L++TEGI + F+++++  +A +A  +N    +IGARRL T
Sbjct: 358 DDFVRILVEPDNALTKQYEALLQTEGIEMKFSDEAVRKIATIASEVNQETENIGARRLHT 417

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A+D+  +T+ I  +YV   +G      D+  FIL
Sbjct: 418 LLEKLLEDLSFEAADIHLETLEITEQYVEEKLGSIAKNRDLSQFIL 463


>gi|297520348|ref|ZP_06938734.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           OP50]
          Length = 392

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/394 (50%), Positives = 277/394 (70%), Gaps = 13/394 (3%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           GQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGKT I+RRLA+LA APF
Sbjct: 1   GQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 60

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV-- 139
           IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A   AEERILD L+  
Sbjct: 61  IKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPP 120

Query: 140 -----GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                G+T      S  R+ FRKKLR+G++ DKEI+I++A     +     PG   +   
Sbjct: 121 AKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEM-TS 179

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +D+I  VE +GIVF+D
Sbjct: 180 QLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFID 238

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           E DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHILFIASGAF +++P+
Sbjct: 239 EIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPS 298

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  I  +
Sbjct: 299 DLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           A+ A  +N +  +IGARRL TV+ER++E+IS+ A
Sbjct: 359 AEAAWQVNESTENIGARRLHTVLERLMEEISYDA 392


>gi|239826608|ref|YP_002949232.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp.
           WCH70]
 gi|259491373|sp|C5D8V9|HSLU_GEOSW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|239806901|gb|ACS23966.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           WCH70]
          Length = 465

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/462 (44%), Positives = 307/462 (66%), Gaps = 32/462 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 5   LTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++A
Sbjct: 65  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDRA 124

Query: 127 SINAEERILDALV------------------GKTATSNTREVFRK------------KLR 156
              A +R+++ LV                   +T+  +T + +              +L 
Sbjct: 125 EQQANKRLVELLVPGKQKQTMKNPLELLFGGAQTSQQDTYQTYEDDHIEQKRRQVAWQLA 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ D+ + IEV +      +F    G     +N+ +  S ++   RKK+     +   
Sbjct: 185 NGQLEDEMVTIEVEEQQPMFFDFLQGAGIEQMGMNMQDALSSLIPKRRKKRKLKVRE-AR 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275
             L  +E+ +LIDMD V +++I++ E  GI+F+DE DKI  +  + +   VSREGVQRD+
Sbjct: 244 KVLTNEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGQAASSADVSREGVQRDI 303

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 304 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDFV 363

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ LI QYK L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+ME+
Sbjct: 364 KILVEPDNALIKQYKALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTIMEK 423

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 424 LLEDLLFEAPDITLDEVVITPQYVEQKLGNIVKNKDLSEFIL 465


>gi|311068137|ref|YP_003973060.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           atrophaeus 1942]
 gi|310868654|gb|ADP32129.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           atrophaeus 1942]
          Length = 467

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQHDAKKAVAVALRNRYRRSLLDEKLKDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + ++V++QA
Sbjct: 66  TEIARRIAKLVGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKINDVKDQA 125

Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157
             NA +RI+  LV GK   S  +  F                          RK++    
Sbjct: 126 EENANKRIVSLLVPGKKKQSGVKNPFEMLFGGNQPNGDEENDSQEEASIEEKRKRMAHQL 185

Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  I +EV +     S FD+  G+ +    +N+ +  S +M   +KK+ +M+V+
Sbjct: 186 AMGELEDHYITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSMM-PKKKKRRKMTVR 242

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271
           +    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI A++ G  +   VSREGV
Sbjct: 243 EARKVLTNEEASKLIDMDEVGQEAVLRAEQGGIIFIDEIDKI-AKNGGASSSADVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L  
Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T
Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LE++SF A D+  + + I  +YV   +G   +  D+  FIL
Sbjct: 422 ILERLLEELSFEAPDVTMEKITITPQYVEDKLGTIANNKDLSQFIL 467


>gi|78043832|ref|YP_360610.1| ATP-dependent protease ATP-binding subunit HslU [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123729577|sp|Q3AB74|HSLU_CARHZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77995947|gb|ABB14846.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 461

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/461 (46%), Positives = 315/461 (68%), Gaps = 31/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IV  LD+YIIGQ+ AK+AVA+ALRNR+RR+ LP  L+DE++PKNIL++GPTGVG
Sbjct: 3   NLTPRQIVEYLDKYIIGQEAAKKAVAVALRNRYRRKLLPPHLKDEIIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VRE +   V ++
Sbjct: 63  KTEIARRLAKLIKAPFVKVEATKFTEVGYVGRDVEGMIRDLVETSLRMVREEKIKMVEDK 122

Query: 126 ASINAEERILDALVGKTATSNTREVF------------------------RKKLRD---- 157
           A   A ER+ + ++      N +  F                        R++L+D    
Sbjct: 123 AYNLAVERLSEIMIPNPKKENIKNPFEMFFGGIREDAAKTDPAYDELNYRRRELQDKIKK 182

Query: 158 GEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           G + ++ ++IEV +  +  +  F + G   +G LN  ++   ++   RKK+ R++V++  
Sbjct: 183 GFLDNEMVEIEVEEQKTPMVEVFGVGGIEEMG-LNFQDILGGLIPPRRKKR-RVTVKEAL 240

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L + E+ +LIDMD V R++I+  E  GIVFLDE DKI +  + +G  VSR GVQRD+L
Sbjct: 241 KILTQQEAQKLIDMDEVQREAIKRAEEDGIVFLDEIDKIASTGNTHGPDVSRGGVQRDIL 300

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LKSL   DF+ 
Sbjct: 301 PIVEGSTVLTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKSLTVEDFKK 360

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT  E+ L  QY EL+ TEG+ L FTEDS++ +A +A  +N    +IGARRL T++E+V
Sbjct: 361 ILTVPENALTKQYVELLATEGVNLKFTEDSLEEIAKMAYTVNERNENIGARRLITILEKV 420

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF+A ++  +TVVID ++V+  + +   ++D+  +IL
Sbjct: 421 LEDLSFNAPEMWGQTVVIDRKFVQDKLSEIVHDSDLSRYIL 461


>gi|258645671|ref|ZP_05733140.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM
           15470]
 gi|260403038|gb|EEW96585.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM
           15470]
          Length = 453

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/457 (46%), Positives = 304/457 (66%), Gaps = 31/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV  LD YI+GQQ+AKR+VA+ALRNRWR  +LP ++  E+ PKNILL+GPTGVG
Sbjct: 3   DLTPRRIVEYLDEYIVGQQNAKRSVAVALRNRWRSSRLPKEIAREVSPKNILLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES---RRDEV 122
           KT I+RR+A L GAPF+KVE TK+TE+GYVGR+VE ++RDL + A+ +V++    R  + 
Sbjct: 63  KTEIARRIAALTGAPFVKVEATKYTEVGYVGRDVESMVRDLAEEAVRLVKKQESGRYGKD 122

Query: 123 REQASIN--AE--------------ERILDALVGKTATSNTREVFRKK-----LRDGEIS 161
            E+A++   AE              E IL     KT  S+  E  R+K     +R GE+ 
Sbjct: 123 AEEAAVQKIAEIMWPAKKKETRSPMEIILGEKAEKTGVSDEGERERRKNLLARIRSGELD 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D++I++E+ +  +     D           +S++F+ +M   + KK +M+V+     L  
Sbjct: 183 DRQIEVELEEKGNIEDTADNEQAN-----RISQIFASMMPK-KMKKRKMTVRMAKTVLAE 236

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVE 280
             ++ ++DMD V   ++ + E  GI+F+DE DKI  R   +G   VSREGVQRD+LP+VE
Sbjct: 237 VSAEEMVDMDVVRDRAVALAEERGIIFIDEIDKIAGRHGASGGPDVSREGVQRDILPIVE 296

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V TKYG I TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV LKSL + D R ILT+
Sbjct: 297 GATVKTKYGRIKTDHILFMAAGAFHVSKPSDLIPELQGRFPIRVELKSLTEEDLRKILTE 356

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               LI QY  L++TEG+ + FTEDS+ A+A++A  +NS   DIGARRL T++ERVLE++
Sbjct: 357 PRQALIRQYTALLETEGVTVTFTEDSVSAIAEIASVVNSETEDIGARRLYTILERVLEEL 416

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF AS+L+ K V ID  YVR  +G+   + D  ++IL
Sbjct: 417 SFEASELENKEVTIDGTYVRQKLGEITKDMDTSNYIL 453


>gi|327441060|dbj|BAK17425.1| ATP-dependent protease HslVU, ATPase subunit [Solibacillus
           silvestris StLB046]
          Length = 463

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/464 (42%), Positives = 311/464 (67%), Gaps = 35/464 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PR+I  +L+R+I+GQ+ AKRAVA+ALRNR+RR  L  +L+ E++PKNIL++GPTGV
Sbjct: 4   INLTPRQITEQLNRHIVGQETAKRAVAVALRNRYRRSLLSEELKTEVIPKNILMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A+L  APFIKVE TKFTE+GYVGR+VE ++RDLV+ +  +V++   + V++
Sbjct: 64  GKTEIARRIAKLTNAPFIKVEATKFTEVGYVGRDVESMVRDLVEASRRLVKDEMFERVKD 123

Query: 125 QASINAEERILDALVGK------------------------TATSNTREVFRKK------ 154
           QA  NA + ++  LV                          TA  +  E+  ++      
Sbjct: 124 QAERNANDILVKLLVPSKVKEKLTQNPFEMLFGQKESSQEDTANQDEPEIRTRRAQITQD 183

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQ 213
           L+DG++ ++ + IEV + +  +  FD   G ++   N + ++ S +M    KK+ ++ V+
Sbjct: 184 LKDGKLEEQWVTIEVTENAPSL--FDAMPGMNMDNANGMQDMLSNLMPKKTKKR-KVQVK 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
                L ++E+++LID D +  ++IQ  E  GI+F+DE DKI ++ S +   VSREGVQR
Sbjct: 241 DARRLLTQEEANKLIDTDALSSEAIQRAEQAGIIFIDEIDKIASKGSSSA-EVSREGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K D
Sbjct: 300 DILPIVEGSTVTTKYGTVKTDYMLFIAAGAFHISKPSDLIPELQGRFPIRVELEKLTKDD 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL + + +LILQYK L++TEG+ L+FT+++I+ +A++A  +N    +IGARRL T++
Sbjct: 360 FVRILKEPDQSLILQYKALLETEGVTLNFTDEAIERIAEIATEVNQETDNIGARRLHTIL 419

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ER+LE++SF AS++    + I   YV   + +     D+  FIL
Sbjct: 420 ERLLEELSFEASEIAPAHIDITPNYVDQKLANIVKNKDLSQFIL 463


>gi|304316913|ref|YP_003852058.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778415|gb|ADL68974.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 460

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/468 (44%), Positives = 302/468 (64%), Gaps = 46/468 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV  LD+YI+GQ  AKR+VA+ALRNR+RR  LP +++DE+ PKNIL++GPTGVG
Sbjct: 3   NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRFRRNLLPDEIKDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ +   V  +
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122

Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158
           A   AEERI+D L+        +  F                           ++K+R+G
Sbjct: 123 AKELAEERIVDYLLNGRKNKRQKNPFEFLFNAPSNDEVQDDEQQEIKLKKAQLKEKIRNG 182

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---------GRKKKIR 209
           E++D  I+IE+ D+++ I       G+    +NL ++FS ++           G  KKI 
Sbjct: 183 ELNDTVIEIEITDSAAPILEMYSNIGSEEMNINLQDMFSDILPKKKKYKKVPIGEAKKI- 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
                    L  +E+  LIDMD V  ++I+  E  GI+F+DE DKI      NG  VSRE
Sbjct: 242 ---------LESEEAQNLIDMDEVIDEAIKRTEQDGIIFIDEIDKIAGSGYTNGPDVSRE 292

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L
Sbjct: 293 GVQRDILPIVEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPL 352

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL + ++ L  QY  L+KTEG+ +++++D+ID +A++A  +N    DIGARRL
Sbjct: 353 TKEDFIRILKEPKNALTKQYAALLKTEGVDVEYSDDAIDRIAEIAYLINQQSEDIGARRL 412

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TVME++ E +SF A ++  K V+ID  Y+   + D  S+ D+  +IL
Sbjct: 413 HTVMEKLFEKLSFEAPEITGKKVIIDRNYIDEQLKDNLSKFDVNKYIL 460


>gi|307109108|gb|EFN57346.1| hypothetical protein CHLNCDRAFT_56057 [Chlorella variabilis]
          Length = 441

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/443 (47%), Positives = 302/443 (68%), Gaps = 17/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR++V  LDRYI+GQ  AK+AVA ALRNRWRR ++P+ LR+E+ PKN+L++GPTG GK
Sbjct: 4   LTPRQVVELLDRYIVGQGAAKKAVANALRNRWRRHKVPSPLREEIHPKNLLMIGPTGCGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI ++R+  R E++ + 
Sbjct: 64  TEIARRLAKMANAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIIMMRQRLRREMKAKI 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
               EERIL AL+G  A ++TR  FR   R+GE+ ++      + +     +  + G  +
Sbjct: 124 DEAVEERILTALLGDVA-ADTRNSFRALYREGELDER----MWSWSWPSPPSHGMLGPWA 178

Query: 187 VGILNLSEL---FSKVMGS---GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            G  ++ E+     K+ G    GR +K +M V +  P +   E++R I+ ++V R++IQ 
Sbjct: 179 SGDGSMQEMVVRVDKIWGGGPLGRGEKRKMKVSEARPLIEEQEAERYINAESVTREAIQA 238

Query: 241 VENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           VE  GIVF+DE DKIV + +   G   S EGVQRDLLP++EGS+VSTK+G++NTD+ILFI
Sbjct: 239 VEQDGIVFIDEIDKIVTSSEHRYGGDASAEGVQRDLLPIIEGSTVSTKHGNVNTDYILFI 298

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH  +P+D+L E+QGR P+RV LK L   DF  ILT+ ESN+I Q + L+ TE + 
Sbjct: 299 CSGAFHSCKPSDMLAELQGRLPIRVELKGLTAEDFYKILTEPESNMIKQQQALLTTENVE 358

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVI 414
           L FT+ SI  +A VA  +N+ V +IGARRL T++ER+LED+SF A +  +++     VVI
Sbjct: 359 LIFTDASIREIARVAEEVNTNVDNIGARRLHTILERILEDVSFDAPEKAKESGSQVNVVI 418

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D E V   IGD   + D+  ++L
Sbjct: 419 DKEDVLTKIGDLLKKQDLSRYVL 441


>gi|303279102|ref|XP_003058844.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460004|gb|EEH57299.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 590

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/459 (44%), Positives = 298/459 (64%), Gaps = 25/459 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P + V  LD++I+GQ DAKRA A+ALRNRWRR ++   LRDE++PKNIL++GPTG
Sbjct: 132 TDGLTPAKTVELLDKFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIGPTG 191

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT I+RRLA++  APF+KVE TKFTE+G+ GR+V+QII+DLVD A++I R   R + +
Sbjct: 192 CGKTEIARRLAKITDAPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAVHITRAKLRTKFQ 251

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNF 179
            +     E ++++ + G+T+   TRE F    R+G +  + I++E+ D +     D+ + 
Sbjct: 252 SEVDAIVENKVVEFMCGETSGDATREAFLSMYREGRLDGRTIELELPDNAGGGPGDVLSG 311

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
            +P    V  LN  L+E      G G   K RM+V +C P +   E +RLI+ DTV +++
Sbjct: 312 MVPPREVVISLNKFLNEGVRGKSGKGSTTKKRMTVAECRPVIEEMEYERLINSDTVVKEA 371

Query: 238 IQMVENYGIVFLDEFDK--------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           +   EN GIVFLDE DK        + + D  +G   S EGVQRDLLP++EGS V TK+G
Sbjct: 372 LSATENDGIVFLDEIDKARSIPTPIVSSNDYRHGADASSEGVQRDLLPIIEGSVVQTKHG 431

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           ++NTD ILFIASGAFH  +P+D+L E+QGR P++V LK L K D   ILT+ E+N+I Q 
Sbjct: 432 NVNTDQILFIASGAFHQCKPSDMLAELQGRLPIKVELKGLTKEDLLRILTEPETNVIKQQ 491

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K L++TEG+ L FT+ +I  +AD++  +N TV +IGARRL TV+E+++ED+SF+A +   
Sbjct: 492 KALLETEGVDLSFTDAAIAHIADISAEVNRTVDNIGARRLHTVLEKIVEDVSFAAPERVR 551

Query: 410 KTVVIDAEYVRLH-----------IGDFPSETDMYHFIL 437
           KT   + E  RL            IG+   +TD+  F+L
Sbjct: 552 KTREAEGEDARLKVVIDVKDVDDAIGELLKKTDLSRFVL 590


>gi|297530611|ref|YP_003671886.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. C56-T3]
 gi|297253863|gb|ADI27309.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           C56-T3]
          Length = 464

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/462 (45%), Positives = 309/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPTGVG
Sbjct: 4   TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++
Sbjct: 64  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 123

Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156
           A   A +R+++ LV                 G+ A ++             R     +L 
Sbjct: 124 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 183

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V +  
Sbjct: 184 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 242

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275
             L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI    + +G   VSREGVQRD+
Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 302

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T++E+
Sbjct: 363 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 423 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464


>gi|262195485|ref|YP_003266694.1| heat shock protein HslVU, ATPase HslU [Haliangium ochraceum DSM
           14365]
 gi|262078832|gb|ACY14801.1| heat shock protein HslVU, ATPase subunit HslU [Haliangium ochraceum
           DSM 14365]
          Length = 456

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/458 (48%), Positives = 311/458 (67%), Gaps = 23/458 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P  IV+ELDRYI+GQ+ AKRAVA+ALRNRWRRQQ+  +L+DE+ PKNI+++G
Sbjct: 1   MKTALELTPAAIVAELDRYIVGQKAAKRAVAVALRNRWRRQQVEGELKDEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APF+KVE +KFTE+GYVGR+V+ I+RDL++V+I +VR+    
Sbjct: 61  PTGVGKTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVDSIVRDLMEVSIKLVRDEESV 120

Query: 121 EVREQASINAEERIL------------------DALVG-KTATSNTREVFRKKLRDGEIS 161
           +VR +A   AEER+L                  D   G + A + TRE  R  LRDG++ 
Sbjct: 121 KVRPKAREAAEERLLDLLLPPRPRAFSDRPPGPDGQSGPQPADTATREKLRTLLRDGKLE 180

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELM 220
           ++E+D+E+ + +S      I GGA V  + LS L   +   G+K K R M + +    L 
Sbjct: 181 EREVDVEITEDNSPF--LQIFGGAGVEEMGLSGLRDMLGSIGKKTKSRKMKIPQALEALT 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279
             E D+LID +T+ R+++   EN GIVFLDE DKI V +D+  G  VSREGVQRDLLP+V
Sbjct: 239 DQEVDKLIDAETLTREAVTRAENAGIVFLDEVDKIAVGQDARQGPDVSREGVQRDLLPIV 298

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYG + TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L  +DF  ILT
Sbjct: 299 EGSTVTTKYGVVRTDHVLFIAAGAFHTSKPSDLIPELQGRFPIRVELEPLTDADFVRILT 358

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + L  QY  L+ TEGI + F ++++  LA +A  +NS   +IGARRL TV+ER+LE+
Sbjct: 359 EPRNALTKQYVALLSTEGIDIQFEDEAVRELAHIAAEVNSRTHNIGARRLHTVLERLLEE 418

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + FSA D+  +T+ I   YV   +     + D+ ++IL
Sbjct: 419 LLFSAPDIGPQTITITKPYVAERLDALVQDEDLANYIL 456


>gi|94496357|ref|ZP_01302934.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           SKA58]
 gi|94424103|gb|EAT09127.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           SKA58]
          Length = 372

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/373 (52%), Positives = 273/373 (73%), Gaps = 4/373 (1%)

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+ VRE 
Sbjct: 3   QTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRREAVREA 62

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184
           AS  A  R+LDAL GK A+  TR  FR+K+ + ++++ E++++VAD+ S     +IPG G
Sbjct: 63  ASEAAMARLLDALTGKEASEATRLSFRQKIENDQMNEVEVEVDVADSPS--MPMEIPGMG 120

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG++NLS++ SK  G  +KK+ +M V   + +L+ +E D+ +D D V R +I   E  
Sbjct: 121 GQVGMINLSDMMSKAFGQTQKKRRKMRVADAWDKLVEEEQDKRLDQDDVARVAISSAEQN 180

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF
Sbjct: 181 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASGAF 239

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TE + +D T 
Sbjct: 240 HVAKPSDLLPELQGRLPIRVELKALTEEDFVAILSDTKASLVAQYRALLATEEVTIDLTP 299

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           + I A+A +A  +NS V +IGARRLQTVME++LED+SF A D + +T+VIDA YV   + 
Sbjct: 300 EGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRRGETLVIDAAYVEKQLS 359

Query: 425 DFPSETDMYHFIL 437
               +TD+  ++L
Sbjct: 360 AVARDTDLSKYVL 372


>gi|45657473|ref|YP_001559.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|59797803|sp|Q72RY7|HSLU_LEPIC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|45600712|gb|AAS70196.1| ATP-dependent hsl protease [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 479

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 308/464 (66%), Gaps = 35/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV++LD +II Q++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVGK
Sbjct: 18  LTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E A
Sbjct: 78  TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137

Query: 127 SINAEERILDALVG---------------------------KTATSNTREVFRKKLRDGE 159
              AEE +LD L+                            KT    TRE  RKKL+ G+
Sbjct: 138 KQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTGK 197

Query: 160 ISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKC 215
           + D+E+++++ + S S +    + G  ++   +L      V+G     + KK ++ + + 
Sbjct: 198 LDDQEVELDLPNPSVSQVPMLQVFGAGNLD--DLDNQLQNVLGDILPKKNKKRKLKIPEA 255

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L   E+++L+D D V R++++ VE  GI+FLDE DKI  R+  +G  VSREGVQRDL
Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF 
Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER
Sbjct: 376 KILTAPRSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435

Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF   DL E  + V ID +YV   +       D+  +IL
Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479


>gi|196247644|ref|ZP_03146346.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           G11MC16]
 gi|196212428|gb|EDY07185.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           G11MC16]
          Length = 464

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 306/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV  LD++IIGQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPTGVG
Sbjct: 4   TLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  EV+++
Sbjct: 64  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEVKDR 123

Query: 126 ASINAEERILDALV-GK---------------------TATSNTREVFRKK-------LR 156
           A   A +R+++ LV GK                        S+  E   KK       L 
Sbjct: 124 AEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAWQLA 183

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ D+ + IE+ +    + +F    G     +N+ +    +M   R+KK R+ V +  
Sbjct: 184 NGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLM-PKRRKKRRLKVSEAR 242

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275
             L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI   ++      VSREGVQRD+
Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQRDI 302

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDFV 362

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T++E+
Sbjct: 363 SILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 423 LLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464


>gi|138894735|ref|YP_001125188.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus
           thermodenitrificans NG80-2]
 gi|166221483|sp|A4IM89|HSLU_GEOTN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134266248|gb|ABO66443.1| Two-component ATP-dependent protease (N-terminalserine protease)
           [Geobacillus thermodenitrificans NG80-2]
          Length = 464

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 306/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV  LD++IIGQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPTGVG
Sbjct: 4   TLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  EV+++
Sbjct: 64  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEVKDR 123

Query: 126 ASINAEERILDALV-GK---------------------TATSNTREVFRKK-------LR 156
           A   A +R+++ LV GK                        S+  E   KK       L 
Sbjct: 124 AEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAWQLA 183

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ D+ + IE+ +    + +F    G     +N+ +    +M   R+KK R+ V +  
Sbjct: 184 NGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLM-PKRRKKRRLKVSEAR 242

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275
             L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI   ++      VSREGVQRD+
Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQRDI 302

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T++E+
Sbjct: 363 SILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 423 LLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464


>gi|56419749|ref|YP_147067.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus
           kaustophilus HTA426]
 gi|261419414|ref|YP_003253096.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp.
           Y412MC61]
 gi|62286711|sp|Q5L0N1|HSLU_GEOKA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56379591|dbj|BAD75499.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
           HTA426]
 gi|261375871|gb|ACX78614.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y412MC61]
          Length = 465

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/462 (44%), Positives = 309/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPTGVG
Sbjct: 5   TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++
Sbjct: 65  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 124

Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156
           A   A +R+++ LV                 G+ A ++             R     +L 
Sbjct: 125 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V +  
Sbjct: 185 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275
             L+ +E+ +LIDMD V ++++++ E  GI+F+DE DKI    + +G   VSREGVQRD+
Sbjct: 244 KVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 303

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 304 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 363

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T++E+
Sbjct: 364 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 423

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 424 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 465


>gi|327398617|ref|YP_004339486.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea
           maritima DSM 10411]
 gi|327181246|gb|AEA33427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea
           maritima DSM 10411]
          Length = 450

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/451 (46%), Positives = 310/451 (68%), Gaps = 17/451 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P++IV  LD+YI+GQ++AK+A+AIALR R+RR ++  D+++E+MPKNIL++GPT
Sbjct: 1   MEHKLTPKKIVELLDKYIVGQKEAKKAIAIALRTRYRRHKVSGDIKEEIMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF+KVE +KFTE+GYVGR+VE IIRDL  ++  +V++    +V
Sbjct: 61  GVGKTEIARRIAKITNAPFVKVEASKFTEVGYVGRDVESIIRDLARISYEMVKQQELKKV 120

Query: 123 REQASINAEERILDALVGKTA------------TSNTREVFRKKLRDGEISDKEIDIEV- 169
            ++A   AEER+LD LV                 S TRE FR+KL+ GE+++K I+I + 
Sbjct: 121 EDKAEKEAEERVLDILVPPVKKRSIYDTEEEERVSRTREKFREKLKSGELNEKIIEITIN 180

Query: 170 ADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                 +  F     A +  L  NL ++   ++  GRKK  +++V++    L  +E+ +L
Sbjct: 181 PQKPEQMVPFIEVAAAPIDELDSNLKDMLDNLL-PGRKKTRKVTVKEALKILKDEEAQKL 239

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVST 286
           ID D V   +I+   N GIVF+DE DKI+++ S   G  VSREGVQRDLLP+VEGSSV+T
Sbjct: 240 IDKDKVKEKAIEKASNDGIVFIDEIDKIISKSSSTSGPDVSREGVQRDLLPIVEGSSVNT 299

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           +YG I TDHILFIA+GAFH  +P+D++PE+QGRFP+RV L+ L K DF  IL + ++ LI
Sbjct: 300 RYGIIKTDHILFIAAGAFHQVKPSDMIPELQGRFPIRVELRPLTKGDFIRILREPKNALI 359

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK L++TEGI + F++D+I+ +A++A  +N    +IGARRL T++E++LEDISF A D
Sbjct: 360 KQYKALLETEGIEIKFSDDAIEKIAEIAEKINKETENIGARRLHTLLEKLLEDISFEAPD 419

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ K + IDA+YV   +     + D+  +IL
Sbjct: 420 IEPKEITIDAKYVGEKLSSIVEDRDLSRYIL 450


>gi|319766229|ref|YP_004131730.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y412MC52]
 gi|317111095|gb|ADU93587.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y412MC52]
          Length = 464

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/462 (44%), Positives = 309/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPTGVG
Sbjct: 4   TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++
Sbjct: 64  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 123

Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156
           A   A +R+++ LV                 G+ A ++             R     +L 
Sbjct: 124 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 183

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V +  
Sbjct: 184 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 242

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275
             L+ +E+ +LIDMD V ++++++ E  GI+F+DE DKI    + +G   VSREGVQRD+
Sbjct: 243 KVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 302

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T++E+
Sbjct: 363 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 423 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464


>gi|219113601|ref|XP_002186384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583234|gb|ACI65854.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 448

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/450 (46%), Positives = 303/450 (67%), Gaps = 25/450 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E+V ELDR+I+GQ DAKRAVAIA+RNRWRRQQLP DLR E+ P+N+LLVGPTGVGKT 
Sbjct: 3   PSEVVHELDRHIVGQHDAKRAVAIAMRNRWRRQQLPEDLRKEVTPRNVLLVGPTGVGKTE 62

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + RR+A+L  APF+KVE TKFTE+GY GR+V+QIIRDL+DV++ + R+   +++R QA  
Sbjct: 63  VMRRMAKLNDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVSMQLTRKVWTEKLRSQARA 122

Query: 129 NAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEV--ADTSSDISNF 179
             E+RILD L G        T  +  R+ FR  LR G + D+EI++EV   D + D+   
Sbjct: 123 MVEDRILDLLTGPAQQGKGGTGDARGRDSFRDMLRQGMLDDQEIEVEVPQGDRNPDVGAG 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD--------ESDRLIDMD 231
               G S  I+ +S+L+ ++ G+   KK     +K      R+        +    +DM 
Sbjct: 183 G-GDGTSPNIVAMSDLWQRMSGAQGGKKTPSERKKLPISEAREVILEVELEKLLENVDM- 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIV-ARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
              +++IQ VE  GIVF+DE DKI  ARD  S      S EGVQRDLLPL+EG++++TKY
Sbjct: 241 --KKEAIQAVEESGIVFIDEIDKICSARDSFSTRSADASAEGVQRDLLPLIEGTTINTKY 298

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G++NTD+ILF+A+GAFH  +P+DLLPE+QGR P+RV LK L + D   ILT+  +NL+ Q
Sbjct: 299 GNVNTDYILFVAAGAFHSVKPSDLLPELQGRLPIRVELKGLTEDDLYRILTEPVANLVRQ 358

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             EL+ +EG+ L+F +D++  +A +A  LN T+ +IGARRL TVMER++E++SF A++L 
Sbjct: 359 QVELIGSEGVSLEFDDDAVREIARMAALLNRTIENIGARRLHTVMERIMEELSFEAAELD 418

Query: 409 EKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437
           +  ++ +D   V+  + +   ++D+  +IL
Sbjct: 419 KGAILRVDKALVQTRLEESTKKSDLSKYIL 448


>gi|299822641|ref|ZP_07054527.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi
           DSM 20601]
 gi|299816170|gb|EFI83408.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi
           DSM 20601]
          Length = 462

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/465 (43%), Positives = 306/465 (65%), Gaps = 31/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+ T   +PR+IV +LD+YIIGQ  AK++VA+ALRNR+RR  +   +R+E++PKNIL++G
Sbjct: 1   MENTAALTPRQIVEKLDQYIIGQHGAKKSVAVALRNRYRRSLMEETIREEIIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF K+E TK+TE+GYVGR+VE ++RDLV+V++ IV+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVKAPFTKIEATKYTEVGYVGRDVESMVRDLVEVSVRIVKEEKMS 120

Query: 121 EVREQASINAEERILDALV-----GKTATSN----------------------TREVFRK 153
           EV  +A  NA++R++  L       K+ T+N                       R+    
Sbjct: 121 EVYTRAQKNADKRVIKLLAPAQKKQKSQTTNPFEALFNQQAQEEEEVDAELRGKRDQLLW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN-LSELFSKVMGSGRKKKIRMSV 212
           +L++GE+ D+ + +EV +  + +  FD+  G+ +  +N +S+  S +M    KK+ +++V
Sbjct: 181 RLQNGELDDQMVTVEVKEQQNPM--FDMLKGSGMDQMNGMSDALSNLMPKQTKKR-KVTV 237

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L  DE+ +LID D V    I+  E  GI+F+DE DKI +        VSREGVQ
Sbjct: 238 AEARKILHEDEAAKLIDQDEVAALGIERAEQLGIIFIDEIDKITSGSEAGSGQVSREGVQ 297

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS V+TKYG++NT++ILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L + 
Sbjct: 298 RDILPIVEGSQVATKYGTVNTEYILFIAAGAFHTSKPSDLIPELQGRFPIRVELEKLGQE 357

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ ++ LI QY+ L+KTEGI L FT+++++ LA +A  +N    +IGARRL T+
Sbjct: 358 DFVKILTEPDNALIKQYRALLKTEGIDLVFTKEAVERLAAIAFEVNQDTDNIGARRLHTI 417

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A ++   TV I   YV   +       D+  FIL
Sbjct: 418 LEKLLEDLLFEAPEITLDTVTITESYVNEKLTSIMQNRDLTEFIL 462


>gi|24215045|ref|NP_712526.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|32129632|sp|Q8F3Q5|HSLU_LEPIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24196095|gb|AAN49544.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 479

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 308/464 (66%), Gaps = 35/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV++LD +II Q++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVGK
Sbjct: 18  LTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E A
Sbjct: 78  TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137

Query: 127 SINAEERILDALVG---------------------------KTATSNTREVFRKKLRDGE 159
              AEE +LD L+                            KT    TRE  RKKL+ G+
Sbjct: 138 KQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTGK 197

Query: 160 ISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKC 215
           + D+E+++++ + S S +    + G  ++   +L      V+G     + KK ++ + + 
Sbjct: 198 LDDQEVELDLPNPSVSQVPMLQVFGAGNLD--DLDNQLQNVLGDILPKKNKKRKLKIPEA 255

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L   E+++L+D D V R++++ VE  GI+FLDE DKI  R+  +G  VSREGVQRDL
Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF 
Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER
Sbjct: 376 KILTAPCSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435

Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF   DL E  + V ID +YV   +       D+  +IL
Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479


>gi|212639572|ref|YP_002316092.1| ATP-dependent protease ATP-binding subunit HslU [Anoxybacillus
           flavithermus WK1]
 gi|212561052|gb|ACJ34107.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Anoxybacillus
           flavithermus WK1]
          Length = 469

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 307/461 (66%), Gaps = 33/461 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV +LD++I+GQ +AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 12  LTPKQIVEKLDQFIVGQHEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E + +EV+EQA
Sbjct: 72  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEKKMNEVKEQA 131

Query: 127 SINAEERILDALV-GKTAT--------------------------SNTREVFRKKLRDGE 159
              A +R+++ LV GKT                            +  R     KL +GE
Sbjct: 132 EQLANKRLVELLVPGKTKQPMKNPFELLFGGTQEQADSGHEEQHIAEKRRQIAWKLANGE 191

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217
           + D+ + +E+ +    +  FD+  GA +  +  N+ ++ S  M   RKK+     +  + 
Sbjct: 192 LEDELVTVEIEEQQPLM--FDLFQGAGMEQMGVNMQDMLSSFMPKKRKKRKLKVKEARHV 249

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLL 276
            L  +E+ +LIDMD V +++I++ E  GI+F+DE DKI  +  +G+   VSREGVQRD+L
Sbjct: 250 -LANEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARKGQAGSSADVSREGVQRDIL 308

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF  
Sbjct: 309 PIVEGSTVMTKYGPVKTDYMLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLTVDDFVK 368

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL +  + L+ QY  L+ TEGI L+F++D+I  +A+VA  +N    +IGARRL T+ME++
Sbjct: 369 ILVEPNNALLKQYVALLATEGIQLEFSDDAIRKIAEVAFEVNQQTDNIGARRLHTIMEKL 428

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+ + A D+  + +VI  +YV   +G+     D+  FIL
Sbjct: 429 LEDLLYEAPDVHLEKIVITPQYVEKKLGNIVRNKDLSQFIL 469


>gi|289523579|ref|ZP_06440433.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503271|gb|EFD24435.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 470

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 310/464 (66%), Gaps = 37/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++++ L+RY+IGQ  AK+AVA+ALRNR RR++LP +L  E++PKNIL+VGPTGVGK
Sbjct: 11  LTPSQVMAYLNRYVIGQTRAKKAVAVALRNRIRRKRLPKELAKEIIPKNILMVGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE +K+TE+GYVGR+VE +IR++ D+A+++V+  + +E    A
Sbjct: 71  TEIARRLAQLVDAPFVKVEASKYTEVGYVGRDVESMIREMADIAVHMVKSRKIEENSAAA 130

Query: 127 SINAEERILDALVGKTATS------------------------------NTREVFRKKLR 156
              AEER+LDAL+     S                               TRE FRK LR
Sbjct: 131 ETLAEERVLDALLPTKHKSRQPQDFMRLLLGDSTEEEEESDETERETKRTTREKFRKLLR 190

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           +G+++D+EI+IEVA+  S +SN    G G     LNL E+   ++    K+K R++V   
Sbjct: 191 EGKLNDREIEIEVAE--SPLSNIPFVGAGMEEMGLNLGEMLGGILPKKIKRK-RVTVANA 247

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273
                ++E+++LIDMD V ++++  V+  GIVF+DE DKI A   G   G  VSREGVQR
Sbjct: 248 LKIFQQEEAEKLIDMDAVVQEALDKVQEEGIVFIDELDKI-ASSGGQKYGPDVSREGVQR 306

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLPLVEG++V TKYG + TDHILFI +GAFH ++P+DL+PE+QGRFP+RV L +L + +
Sbjct: 307 DLLPLVEGTTVQTKYGPVKTDHILFIGAGAFHETKPSDLIPELQGRFPIRVELDALEEEE 366

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              IL + E++L+ QYK L++TEGI + F + ++ A+A  A  +N  + +IGARRL T+M
Sbjct: 367 LLRILVEPENSLVKQYKALLETEGIEMIFDDGALKAIAFFAAKMNREMENIGARRLHTMM 426

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LEDISF A +L+E+ V ID  +V   + D    TD+  ++L
Sbjct: 427 EQLLEDISFKAPELREREVRIDEAFVNERLADLVENTDLRRYLL 470


>gi|91204118|emb|CAJ71771.1| strongly similar to ATP-dependent Hsl protease, ATP-binding subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 451

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 306/449 (68%), Gaps = 21/449 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV ELD+Y+IGQ+ AKRAVAIA+RNRWRR QL  +LR+E++PKNI+++GPTGVGK
Sbjct: 6   LTPRKIVEELDKYVIGQKSAKRAVAIAIRNRWRRHQLSEELREEILPKNIIMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A +  APF+K+E +K+TE+GY GR+VE +IRD+ ++ +N+V+     +V+ +A
Sbjct: 66  TEIARRMASMVKAPFLKIEASKYTEVGYHGRDVESMIRDITEIGVNMVKAEMVKDVQGKA 125

Query: 127 SI----------------NAEERILDALVGKTATS-NTREVFRKKLRDGEISDKEIDIEV 169
                             N+E+   +  V K      TRE  RKKLRDG ++++ +++ V
Sbjct: 126 EELAEERLLDLLLPPTPKNSEKMDKEKEVAKEDQRIKTREKLRKKLRDGALANRTVELTV 185

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            + S  +  F + G   +GI +   +  K M   R +  +  V +    L+++E+++LID
Sbjct: 186 HEKSYVLQGF-VTGVEDMGI-DFQNMMEK-MIPPRAQVRKAPVAEAKRILIQEEAEKLID 242

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +   +++I+  E +GI+FLDE DKI  R++  G  VSREGVQRDLLP+VEG++V+T+YG
Sbjct: 243 KEKAIQEAIRRTEQFGIIFLDEIDKIAGRETSRGPDVSREGVQRDLLPIVEGTTVNTRYG 302

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TD ILF+A+GAFHVS+P+DL+PE+QGRFP+RV L+ L K +F  ILT+ ++ L+ QY
Sbjct: 303 IVKTDRILFVAAGAFHVSKPSDLIPELQGRFPIRVELEDLGKEEFLRILTEPKNALLKQY 362

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ- 408
           K L++TEGI + F +++I+ + ++AV +N    +IGARRL TV+E++LED SF A D++ 
Sbjct: 363 KSLLETEGIKVHFKKEAIETITEIAVQVNKRTQNIGARRLHTVLEKLLEDASFDAPDMEG 422

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K V+ID +YV   +     + D+  +IL
Sbjct: 423 GKEVIIDDKYVNDKLQAIVKDEDLSRYIL 451


>gi|222151087|ref|YP_002560241.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120210|dbj|BAH17545.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 457

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 304/463 (65%), Gaps = 41/463 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IVS LD +IIGQQDAKR VA++LRNR+RR  L  +++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQIVSHLDEHIIGQQDAKRKVAVSLRNRYRRMALDDEIQKEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L GAPF+KVE TK+TE+GYVGR+VE +IRDL +  + +++E ++ EV E+
Sbjct: 65  KTEIARRMAKLVGAPFVKVEATKYTEVGYVGRDVESMIRDLTENGVRLIKEKKKQEVLEE 124

Query: 126 ASINAEERILDALVGKTATSNT----------------------------REVFRKKLRD 157
           A  NAEER++  LV                                    R+  + +L+ 
Sbjct: 125 AKRNAEERLVKLLVPAMKKKENKAGNPFEMLFNQTIQEEEDAPDEQVKLKRKDIQAQLKA 184

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKC 215
           G++ D+ + I+V      ++ F    G  +    + ++FS++M    KKK+   + V   
Sbjct: 185 GKLEDETVKIKVEQEFKGLNMF----GMDMQNNQMQDMFSQMMP---KKKVERTLKVSDA 237

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRD 274
              L+ +E+ +LID +++H +++ + E  GIVF+DE DKI     GN G  VSR+GVQRD
Sbjct: 238 REVLIDEEATKLIDEESMHSEAVALTEQLGIVFIDEIDKIAG---GNQGPDVSRQGVQRD 294

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS V TKYG++NT+HILFI +GAFHVS+P+DL+PE+QGRFP+RV L  L+  DF
Sbjct: 295 ILPIVEGSVVQTKYGAVNTEHILFIGAGAFHVSKPSDLIPELQGRFPIRVELDKLSVDDF 354

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           + IL + + +L+ QY+ L+ TE + ++FT+++ID LA+++  +N    +IGARRL T++E
Sbjct: 355 KRILKEPKLSLLKQYESLLATEDVTINFTDEAIDRLAEMSYEVNQETDNIGARRLHTILE 414

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ F AS++    V I A+YV   +G+     ++  FIL
Sbjct: 415 KMLEDLLFEASEMPNAHVDITAQYVDAKLGNITKNKNLSEFIL 457


>gi|288553070|ref|YP_003425005.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           pseudofirmus OF4]
 gi|288544230|gb|ADC48113.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           pseudofirmus OF4]
          Length = 464

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 302/463 (65%), Gaps = 33/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV  L++YI+GQ+ AK++VAIALRNR+RR  L   L++E+ PKNIL++GPTGVG
Sbjct: 4   NLTPKQIVERLNQYIVGQEGAKKSVAIALRNRYRRSLLEDKLKEEVTPKNILMIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ I++E + + V+E+
Sbjct: 64  KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRILKEEKMEGVKEE 123

Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155
           A  +A ER+++ LV      +T                              R     +L
Sbjct: 124 ALRHANERLVELLVPSNKKQSTYKNPFEMLFNQPGQQQPDDSNGEEEGMKEQRRRMAHQL 183

Query: 156 RDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             GE+ D+ + IEV + +    + F   G   +G +N+ ++    M   ++KK +M V +
Sbjct: 184 ALGELEDRIVTIEVEEQTQQFMDMFQGAGMEQMG-MNMQDMLGS-MIPKKRKKRKMPVSE 241

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L  +E+ +LIDMD V + +++  E  GI+F+DE DK+  + SG    VSREGVQRD
Sbjct: 242 ARNVLAEEEAQKLIDMDEVTQLAVERAEQLGIIFIDEIDKVAGKSSGQSADVSREGVQRD 301

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS++ TKYG++ TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK+L   DF
Sbjct: 302 ILPIVEGSTIVTKYGAVKTDHILFIGAGAFHIAKPSDLIPELQGRFPIRVELKNLTVDDF 361

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY  L++TEGI + FT+D++  +A +A  +N    +IGARRL T++E
Sbjct: 362 VRILVEPDNALLKQYSALLQTEGIKVTFTDDAVRKIATIATEVNQDTENIGARRLHTMLE 421

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A+D+  + +VI  EYV   +       D+  +IL
Sbjct: 422 KLLEDLSFEAADITLEEIVITPEYVEEKLATIAKNRDLSQYIL 464


>gi|255322166|ref|ZP_05363312.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae
           RM3277]
 gi|255300539|gb|EET79810.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae
           RM3277]
          Length = 440

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/446 (44%), Positives = 301/446 (67%), Gaps = 19/446 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   ++D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V+  +R++ RE
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKAEQREKNRE 120

Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     +++I+  L+    T            + E    +L +G++ D  I+IE+   S 
Sbjct: 121 KIDEYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEIVQNS- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               FD        +  + E F K++G S +  K  M V+     L  + SD+++DM+++
Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
             ++++  EN GI+F+DE DK VA  SGN      S+EGVQRDLLP+VEGS+V+TK+G+I
Sbjct: 236 KTEAVRRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAI 294

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY+ 
Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEA 354

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+KTE + L FT+D+I A+A +A N N  + DIGARRL TV+ERV+EDISF A++   +T
Sbjct: 355 LLKTENVELKFTDDAIKAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGET 414

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +D   V   + D   + D+  +IL
Sbjct: 415 IEVDKALVGKRLSDVVEDQDLARYIL 440


>gi|260655109|ref|ZP_05860597.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi
           E3_33 E1]
 gi|260630220|gb|EEX48414.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi
           E3_33 E1]
          Length = 462

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/460 (46%), Positives = 299/460 (65%), Gaps = 34/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P  IV+ LDRYI+GQ +AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGVG
Sbjct: 9   SLQPAAIVAYLDRYIVGQTEAKRAVAVALRNRVRRRRLPEELAAEITPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E    E  + 
Sbjct: 69  KTEIARRLASLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVEAAVRMVKERMAAEKTDS 128

Query: 126 ASINAEERILDALV----------------------------GKTATSNTREVFRKKLRD 157
           A+  A ER++D LV                            G     +TR+  R+ L +
Sbjct: 129 AASAARERMIDYLVPVKRSGEGGGIPTFMSYLKGVEADEPSQGPEMKDSTRDKMRRLLEE 188

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+E++IEV +T    +  D    +++G+ N+ E+    M   R K+ R+ V+    
Sbjct: 189 GKLDDREVEIEVQETPP-ATGMD---QSAMGV-NIGEMLGSFMPK-RTKRRRVKVKDGLR 242

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E+++LID D  H+++I+  ++ GI+F+DE DK+VA ++  G  VSREGVQRDLLP
Sbjct: 243 ILQAEEAEKLIDTDRAHQEAIKSAQDEGIIFIDEIDKVVASENRGGADVSREGVQRDLLP 302

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG +V TKYG + TDH+LFIA+GAF   +P+DL+PE+QGR P+RV L +L K D   I
Sbjct: 303 IVEGCTVPTKYGPVKTDHMLFIAAGAFQSVKPSDLVPELQGRLPLRVELSALRKEDLSKI 362

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+   NL+ QYK L+ TEG+ L FT D ID LA++A   N    +IGARRL T++ERVL
Sbjct: 363 LTEPRHNLLDQYKALLSTEGVELCFTADGIDRLAELAERTNRESENIGARRLHTMLERVL 422

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SFSASD   +TV ID   V   + D  +  D+  ++L
Sbjct: 423 EDVSFSASDYAGQTVTIDRAAVDKKLADIAANVDLRRYLL 462


>gi|313609076|gb|EFR84790.1| ATP-dependent protease HslVU, ATPase subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 472

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 7   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 67  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 245 VSVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472


>gi|329121220|ref|ZP_08249847.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister
           micraerophilus DSM 19965]
 gi|327470154|gb|EGF15617.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister
           micraerophilus DSM 19965]
          Length = 454

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 300/457 (65%), Gaps = 31/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV  LD+YIIGQ++AK++VAIALRNRWR  +L  +++ E+ PKNILL+GPTGVG
Sbjct: 4   TLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116
           KT I+RRLA L  APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++         
Sbjct: 64  KTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKLGKN 123

Query: 117 SRRDEVREQASI-----NAEER-ILDALVGKTATS----------NTREVFRKKLRDGEI 160
           S+ + +++ A I       E R  +D + G+                RE F +++R+GE+
Sbjct: 124 SQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRNGEM 183

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            ++ I+IEV D        D        I+ ++++ S +M    KKK             
Sbjct: 184 DERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAAKKI-FA 237

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            + +D ++DM+TV   +I++ +  GI+F+DE DKI  +    G GVSREGVQRD+LP+VE
Sbjct: 238 EEAADEMLDMETVKEKAIEVAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILPIVE 297

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R IL +
Sbjct: 298 GATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKILIE 357

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               LILQY  L++TEG+ ++F + ++DA++++A  +N+   +IGARRL T++E+VLEDI
Sbjct: 358 PRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVLEDI 417

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A D+ EK +V+D  YVR  +G      D+ ++IL
Sbjct: 418 SFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454


>gi|257459459|ref|ZP_05624568.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           gracilis RM3268]
 gi|257442884|gb|EEV18018.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           gracilis RM3268]
          Length = 438

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/444 (45%), Positives = 306/444 (68%), Gaps = 19/444 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV +LD YIIGQ  AKR +A+ALRNR+RR  L  ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKQIVEKLDEYIIGQNSAKRTIAVALRNRYRRMALEDEMKNEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR----ESRRDEV 122
           T I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+VR    E  +D++
Sbjct: 61  TEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVRGEEFEKNKDKI 120

Query: 123 REQASINAEERILDAL---VGKTATSNTREVFRK---KLRDGEISDKEIDIEVADTSSDI 176
            +       E++L  L     +   ++  + + K   KL  G++ D  I+IEV++ + + 
Sbjct: 121 DDYIKRKILEKVLPPLPRGASEEKIADYEKSYEKMAAKLERGDLDDLSIEIEVSENALE- 179

Query: 177 SNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           SN ++P      + N+ E F KV+G S RK K  M V+     L  + S++++DM+++  
Sbjct: 180 SNPNLPPE----MANMQESFIKVIGISTRKSKKEMKVKDAKVALKSEASEKVLDMESIKA 235

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           ++++  +N GI+F+DE DK VA  SGN      S+EGVQRDLLP+VEGSSVSTK+G+I+T
Sbjct: 236 EAVRRAQNEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSSVSTKFGNIDT 294

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY  L+
Sbjct: 295 DHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEAALCEILTKPKNSLLKQYSALL 354

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ L+F+ED + A+A  A + N  V DIGARRL T+ME+VLEDISF A   + + +V
Sbjct: 355 KTEGVELEFSEDGVKAIAKFAASTNEKVEDIGARRLHTIMEKVLEDISFEADKFKGQKIV 414

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +    S+ D+  +IL
Sbjct: 415 VDEKLVSEKLAGIASDEDLAKYIL 438


>gi|323489574|ref|ZP_08094801.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus
           donghaensis MPA1U2]
 gi|323396705|gb|EGA89524.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/466 (43%), Positives = 306/466 (65%), Gaps = 30/466 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   + +PR+I + LDRYI+GQ+DAKR++AIALRNR+RR +L  ++R E++PKNIL++G
Sbjct: 1   MKNQSDLTPRQITNHLDRYIVGQKDAKRSIAIALRNRYRRSRLDEEMRGEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ IV+E + +
Sbjct: 61  PTGVGKTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEAAVRIVKEEKYE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTRE-----VFRKKLRDG----------EISDKEI 165
            V+ QA   A ERI+  L        T +     +F +KL              +  +EI
Sbjct: 121 AVKFQAETAANERIVKLLAPSLRKKQTNQNPLEMIFGQKLEQEEEEPTAEVEVRVKRREI 180

Query: 166 DIEV------------ADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMS 211
             ++                + +S FD   G+ +  +  N+ + FS +M   +KK+    
Sbjct: 181 AADLKAGKLEEEWVTVEVVENSLSMFDALQGSGMEQMGANMQDAFSSLMPKKKKKRRLRV 240

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
            +     L  +E+ +LID + V  ++I+  E +GI+F+DE DKI ++ + +   VSREGV
Sbjct: 241 KE-ARRVLTTEEAAKLIDDEEVGMEAIERAEQHGIIFIDEMDKIASKSNSSSADVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+VSTKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L  
Sbjct: 300 QRDILPIVEGSTVSTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELQKLEV 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QYK L++TEGI++ F++ SI  LA++A  +N    +IGARRL T
Sbjct: 360 EDFVKILTEPKHSLINQYKALLETEGIVVHFSDASIIRLAEIAYEVNQDTDNIGARRLHT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF AS++    + I  +YV   + +     D+  FIL
Sbjct: 420 ILERLLEDLSFEASEISPAQIDITVQYVNEKLENVAKNKDLSQFIL 465


>gi|116872712|ref|YP_849493.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123466231|sp|A0AI82|HSLU_LISW6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116741590|emb|CAK20714.1| heat shock protease HslVU, ATPase subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 469

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 307/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERIL------------------DALVGKTATS-------------NTRE 149
            VR +A  NAE+R++                  +AL G    S             N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQSEETTEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMKNKDLTQFIL 469


>gi|311748240|ref|ZP_07722025.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1]
 gi|126576732|gb|EAZ80980.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1]
          Length = 464

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/466 (45%), Positives = 305/466 (65%), Gaps = 31/466 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   + +PR+IV ELD+YIIGQ+DAKR VAIALRNR RR  + +D++ +++P NIL++G
Sbjct: 1   MEQIISLTPRQIVGELDKYIIGQKDAKRNVAIALRNRIRRLMVKSDIQKDIVPNNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VRE + +
Sbjct: 61  STGVGKTEIARRLAKVANAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVALVREEKNE 120

Query: 121 EVREQASINAEERILDALVGKTATSN-----------------------TREVFRKKLRD 157
            V+ +A+   EE ILD L+    ++                        TRE FR+KLR+
Sbjct: 121 AVKAKAAEAVEELILDILIPPVKSAGFTRNAVPADTNSEPNTDEELNERTRERFREKLRN 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKC 215
           GE+ D++++I V  +S   +   + G   +   +++ L   + G    + KK ++S+ + 
Sbjct: 181 GELDDRKVEINVKASSP--TGIGMIGNGMIDDASMAGLQDMIWGMMPKKTKKRKLSISEA 238

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273
              LM +E  RLID D V  ++I++ EN GI+F+DE DKI ++   NG G  VSREGVQR
Sbjct: 239 RKVLMEEEVSRLIDFDEVKEEAIKLAENNGIIFIDEIDKIASKSGKNGGGPDVSREGVQR 298

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLP+VEGSSV+TKYG INTDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL + D
Sbjct: 299 DLLPIVEGSSVNTKYGVINTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQSLTQED 358

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F +IL + ++ L  QY+ L + E + L+F E+SID +A +A  +N  V +IGARRL TVM
Sbjct: 359 FAMILREPKNALTKQYQALFEAEEVYLEFNEESIDEIARLAFLINQEVENIGARRLHTVM 418

Query: 394 ERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +L D  F   D       +++  E V+  +       D+  +IL
Sbjct: 419 SHLLNDFLFDVPDTIKANSKIMVTKEMVQERLSSLVQNRDLSQYIL 464


>gi|313892602|ref|ZP_07826189.1| ATP-dependent protease HslVU, ATPase subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313118999|gb|EFR42204.1| ATP-dependent protease HslVU, ATPase subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 454

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 299/457 (65%), Gaps = 31/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV  LD+YIIGQ++AK++VAIALRNRWR  +L  +++ E+ PKNILL+GPTGVG
Sbjct: 4   TLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116
           KT I+RRLA L  APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++         
Sbjct: 64  KTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKLGKN 123

Query: 117 SRRDEVREQASI-----NAEER-ILDALVGKTATS----------NTREVFRKKLRDGEI 160
           S+ + +++ A I       E R  +D + G+                RE F +++R+GE+
Sbjct: 124 SQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRNGEM 183

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            ++ I+IEV D        D        I+ ++++ S +M    KKK             
Sbjct: 184 DERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAAKKI-FA 237

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            + +D ++DM+TV   +I+  +  GI+F+DE DKI  +    G GVSREGVQRD+LP+VE
Sbjct: 238 EEAADEMLDMETVKEKAIEAAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILPIVE 297

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R IL +
Sbjct: 298 GATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKILIE 357

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               LILQY  L++TEG+ ++F + ++DA++++A  +N+   +IGARRL T++E+VLEDI
Sbjct: 358 PRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVLEDI 417

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A D+ EK +V+D  YVR  +G      D+ ++IL
Sbjct: 418 SFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454


>gi|269792951|ref|YP_003317855.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100586|gb|ACZ19573.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 460

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/462 (45%), Positives = 299/462 (64%), Gaps = 32/462 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PR +V  LDR+I+GQ  AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGV
Sbjct: 2   MDLTPRMVVEYLDRHIVGQSKAKRAVAVALRNRIRRRRLPEELAREVYPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+VA  +VR  R +EV  
Sbjct: 62  GKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVAFQMVRSRRLEEVSP 121

Query: 125 QASINAEERILDALVGKTAT-----------------------------SNTREVFRKKL 155
           +A   AEER+LDAL+                                  S TRE  R+ L
Sbjct: 122 EARRRAEERVLDALLPSPKPRTEGLNFLKLLGVEGSQEEAAPEEPDERRSATREKLRELL 181

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++ ++ +++EV +  S + N  + G      L+L ++   +    R ++  M+V K 
Sbjct: 182 RARKLDERTVEVEVFE--SPLPNVAVMGPMGGEGLDLGDMLGGLFPK-RPRRKSMTVAKA 238

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
             EL  DE+D+L+D +++ R+++++ E  GIVF+DE DKI +  + +G  VSREGVQRDL
Sbjct: 239 LEELEADEADKLLDRESLSREAVRLAEEEGIVFIDEMDKIASSGASHGPDVSREGVQRDL 298

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LPLVEG+ V+TKYG + TDH+LFIA+GAFH  +P+DL PE+QGRFP+RV L+ L + D  
Sbjct: 299 LPLVEGTVVNTKYGPVRTDHVLFIAAGAFHKVKPSDLAPELQGRFPIRVELEPLGEEDLY 358

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +L +QY EL++T+G+ L F ++ +  +A +A  +N  + DIGARRL T+ME 
Sbjct: 359 RILVEPQGSLTVQYGELLRTDGVELKFLDEGLREVAQMAHRMNREMEDIGARRLHTLMEM 418

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF A D     V +D EYV   +G    E D   ++L
Sbjct: 419 LLEDLSFEAPDGVRGEVTVDREYVASRVGGLLEERDPRRYLL 460


>gi|217964578|ref|YP_002350256.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes HCC23]
 gi|254802309|sp|B8DG52|HSLU_LISMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217333848|gb|ACK39642.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes HCC23]
 gi|307570858|emb|CAR84037.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           monocytogenes L99]
          Length = 469

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|315302918|ref|ZP_07873651.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL
           F6-596]
 gi|313628714|gb|EFR97114.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL
           F6-596]
          Length = 469

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 307/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT   +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LTSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALV-----GKTAT--------------------------SNTREVF 151
           R +A  NAE+R++  L       +TA+                           N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTASPNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIELIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMKNRDLTQFIL 469


>gi|159901849|gb|ABX10584.1| ATP-dependent protease ATP-binding subunit [uncultured
           planctomycete 5H12]
          Length = 477

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/458 (43%), Positives = 302/458 (65%), Gaps = 34/458 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PRE+V +LDRYI+GQ  AKRAV+IA+RNRWRRQQLP DL+ E+ PKNIL++G TGVGKT
Sbjct: 26  TPRELVEQLDRYIVGQARAKRAVSIAIRNRWRRQQLPDDLKGEVAPKNILMIGSTGVGKT 85

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+L  APFIKVE TK+TE+GY GR+VE ++R+LV+ +I+++R + +  V   A 
Sbjct: 86  EIARRLAKLTDAPFIKVEATKYTEVGYYGRDVESMVRELVENSISLIRATEKQRVETLAR 145

Query: 128 INAEERILDALV--------------GKTAT--------SNTREVFRKKLRD----GEIS 161
              ++++LD L               G ++T        S++ E  R K++D    GE+ 
Sbjct: 146 DRTDDKLLDLLAPRPKAYEFQPAGQDGASSTEAVAVELESDSYERTRAKMKDMLVAGELE 205

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPEL 219
           ++++++ +   S  +    + GG  V  +++    +  K+M      +  ++V +    +
Sbjct: 206 ERQVELTIEQKSQPV----MMGGVGVEQMDMDFQGMLEKIMPKNTVTR-SLTVAEARKVV 260

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
              + D L+D D ++  +I   ++ GI+FLDE DK++A D G G  VSR+GVQRDLLP+V
Sbjct: 261 FDQQCDSLLDQDKINEMAIVQAQDMGIIFLDELDKVIASD-GKGTDVSRQGVQRDLLPIV 319

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG++V TKYG + TDHILF+A+GAFH  +P+DL+PE+QGRFP+RV L  L K DF  ILT
Sbjct: 320 EGTTVQTKYGYVKTDHILFVAAGAFHKHQPSDLMPELQGRFPIRVELDDLTKKDFVQILT 379

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +++L  QY  L+KTEG+ L+FT+D+++ALA+ A  +N T  +IGARRL T++E++LE+
Sbjct: 380 EPKNSLTRQYAALLKTEGVELEFTQDAVEALAEYAFQVNQTTQNIGARRLYTILEQLLEE 439

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF + D++   V I+  YV   +     + D+  FIL
Sbjct: 440 LSFESPDMKMGKVEINGPYVSDRLAAIADDEDLSRFIL 477


>gi|224499050|ref|ZP_03667399.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           Finland 1988]
          Length = 469

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 307/469 (65%), Gaps = 35/469 (7%)

Query: 2   KLTF--NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           KLT     +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++
Sbjct: 3   KLTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMI 62

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + 
Sbjct: 63  GPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKM 122

Query: 120 DEVREQASINAEERI------------------LDALVG-------------KTATSNTR 148
             VR +A  NAE+R+                  L+AL G                  N R
Sbjct: 123 QLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKR 182

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
                +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK 
Sbjct: 183 SQIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKR 240

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           +++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSR
Sbjct: 241 KVTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSR 300

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  
Sbjct: 301 EGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDK 360

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARR
Sbjct: 361 LTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARR 420

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 421 LHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|47097540|ref|ZP_00235077.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47014088|gb|EAL05084.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 1/2a F6854]
          Length = 472

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 7   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 67  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 245 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472


>gi|23099005|ref|NP_692471.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus
           iheyensis HTE831]
 gi|32129626|sp|Q8CXH1|HSLU_OCEIH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|22777233|dbj|BAC13506.1| ATP-dependent Clp protease (heat-shock protein HslU)
           [Oceanobacillus iheyensis HTE831]
          Length = 465

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 307/469 (65%), Gaps = 38/469 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +++PR+IV +LD++I+GQ+ AK++VA+ALRNR+RR +L    RDE++PKNIL++GPT
Sbjct: 1   MGMDYTPRQIVEQLDQFIVGQKQAKKSVAVALRNRYRRMKLDEGFRDEIVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV++A+ +V+E +   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVEMAVRMVKEEKMAGV 120

Query: 123 REQASINAEERILDALV----GKTATSNTREVF------------------------RKK 154
             +A   A +R++  LV     K A  N  E+                         RK+
Sbjct: 121 MNEAEEEANKRLVKLLVPESKKKPAMKNPFEMLFQSDGSDGDDETTEQDSHDEIRSKRKR 180

Query: 155 LRD----GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKI 208
           +      GE+ D  + +E+ +     S FD+  G+ +  +  N+ + F + M   +KKK 
Sbjct: 181 IAHQLALGELEDHIVSVEIDEVPP--SMFDMLQGSGMEQMGMNMQDAFGQFMPK-KKKKR 237

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            + V +    L + E+ +L+DMD V +++    E  GI+F+DE DK+  +   N   VSR
Sbjct: 238 NLPVSEARKVLTQQEAQKLVDMDEVAQEATSRAEGSGIIFIDEIDKVAGKQE-NAANVSR 296

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS+V TK+G++ TDH+LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ 
Sbjct: 297 EGVQRDILPIVEGSTVVTKHGTVKTDHMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEK 356

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF+ ILT+  + LI QY+ +++TEGI ++FT+++I+ LA++A  +N    +IGARR
Sbjct: 357 LTVEDFKRILTEPSNALIKQYQLMLQTEGINVEFTDEAIERLAEIAYQVNQNTDNIGARR 416

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+S+ A ++  + V I   YV   +     + D+  FIL
Sbjct: 417 LHTILEKLLEDLSYEAPEITMEKVEITVGYVDDKLSSIVQDKDLSQFIL 465


>gi|16803319|ref|NP_464804.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes EGD-e]
 gi|224501776|ref|ZP_03670083.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-561]
 gi|254829964|ref|ZP_05234619.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 10403S]
 gi|21759169|sp|Q8Y7J8|HSLU_LISMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|16410695|emb|CAC99357.1| clpY [Listeria monocytogenes EGD-e]
          Length = 469

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|226223882|ref|YP_002757989.1| ATP-dependent Clp protease-like protein [Listeria monocytogenes
           Clip81459]
 gi|254824660|ref|ZP_05229661.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL J1-194]
 gi|254852667|ref|ZP_05242015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL R2-503]
 gi|254932404|ref|ZP_05265763.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes HPB2262]
 gi|254994004|ref|ZP_05276194.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL J2-064]
 gi|300765315|ref|ZP_07075299.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes FSL N1-017]
 gi|62286832|sp|Q720E2|HSLU_LISMF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|259491375|sp|C1L2I7|HSLU_LISMC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225876344|emb|CAS05053.1| Putative ATP-dependent Clp protease-like protein [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605985|gb|EEW18593.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL R2-503]
 gi|293583961|gb|EFF95993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes HPB2262]
 gi|293593899|gb|EFG01660.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL J1-194]
 gi|300513998|gb|EFK41061.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes FSL N1-017]
          Length = 469

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERI------------------LDALVG-------------KTATSNTREVF 151
           R +A  NAE+R+                  L+AL G                  N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|224476377|ref|YP_002633983.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254802318|sp|B9DPG6|HSLU_STACT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|222420984|emb|CAL27798.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 468

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/470 (42%), Positives = 306/470 (65%), Gaps = 48/470 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAK+ VAIALRNR+RR QL  +++ E++PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSQLNEYIVGQNDAKKKVAIALRNRYRRSQLDEEMKQEIVPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E R+D+V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEDRKDKVKDEA 127

Query: 127 SINAEERILDALV---GKTATSNTREVF-------------------------------- 151
              A ++++  LV    K A  N    F                                
Sbjct: 128 VKKANDKLVKLLVPSMKKKANQNAGNPFESIFGGMMPNFGNNDEEDEEPPTEDIKTKRSE 187

Query: 152 -RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR 209
            R +L +G++ ++++ I+V            PG   +   N ++    +M     KKK+ 
Sbjct: 188 IRSQLLNGQLEEEKVRIKVEQD---------PGALGMLGTNQNQQVQDMMNQLMPKKKVE 238

Query: 210 MSVQ-KCYPELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             V  K   +++ DE +D LID +T +++++++ E  GI+F+DE DK+ + + G G  VS
Sbjct: 239 REVPVKTARKILADEYADELIDHETANQEALELAEQMGIIFIDEIDKVASNNQGGGQDVS 298

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRD+LP+VEGS V TKYGS+NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L 
Sbjct: 299 RQGVQRDILPIVEGSVVQTKYGSVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELD 358

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL+  DF  IL + + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGAR
Sbjct: 359 SLSVDDFVNILKEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGAR 418

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+S+ A  +    V I A+YV   +    +  D+  FIL
Sbjct: 419 RLHTILEKMLEDLSYEAPGMPNAVVDITAQYVDDKLKSISTNKDLSAFIL 468


>gi|328475123|gb|EGF45907.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 220]
 gi|332311724|gb|EGJ24819.1| ATP-dependent protease ATPase subunit HslU [Listeria monocytogenes
           str. Scott A]
          Length = 469

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERI------------------LDALVG-------------KTATSNTREVF 151
           R +A  NAE+R+                  L+AL G                  N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDELTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|313623985|gb|EFR94084.1| ATP-dependent protease HslVU, ATPase subunit [Listeria innocua FSL
           J1-023]
          Length = 469

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 310/468 (66%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERI------------------LDALVG------KTAT-------SNTRE 149
            VR +A  NAE+R+                  L+AL G      +TA         N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDETAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  ++  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +    +  D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469


>gi|254828642|ref|ZP_05233329.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165]
 gi|254898556|ref|ZP_05258480.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes J0161]
 gi|254911953|ref|ZP_05261965.1| heat shock protein HslVU [Listeria monocytogenes J2818]
 gi|254936280|ref|ZP_05267977.1| heat shock protein HslVU [Listeria monocytogenes F6900]
 gi|284801664|ref|YP_003413529.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284994806|ref|YP_003416574.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|258601041|gb|EEW14366.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165]
 gi|258608869|gb|EEW21477.1| heat shock protein HslVU [Listeria monocytogenes F6900]
 gi|284057226|gb|ADB68167.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284060273|gb|ADB71212.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|293589915|gb|EFF98249.1| heat shock protein HslVU [Listeria monocytogenes J2818]
          Length = 469

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|46907506|ref|YP_013895.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|46880774|gb|AAT04072.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|328468568|gb|EGF39568.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 1816]
          Length = 463

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/463 (42%), Positives = 304/463 (65%), Gaps = 33/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPTGVG
Sbjct: 3   QLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   VR +
Sbjct: 63  KTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLVRVK 122

Query: 126 ASINAEERI------------------LDALVG-------------KTATSNTREVFRKK 154
           A  NAE+R+                  L+AL G                  N R     +
Sbjct: 123 AEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQIEWR 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++V++
Sbjct: 183 LQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVTVRE 240

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGVQRD
Sbjct: 241 AKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRD 300

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L + DF
Sbjct: 301 ILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDF 360

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T++E
Sbjct: 361 YKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILE 420

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 421 KLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 463


>gi|16800386|ref|NP_470654.1| ATP-dependent protease ATP-binding subunit HslU [Listeria innocua
           Clip11262]
 gi|21759184|sp|Q92C73|HSLU_LISIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|16413791|emb|CAC96549.1| clpY [Listeria innocua Clip11262]
          Length = 469

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 307/468 (65%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERI------------------LDALVGKTAT-------------SNTRE 149
            VR +A  NAE+R+                  L+AL G                  N R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGSMNQPDEPAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  ++  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +    +  D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469


>gi|15615026|ref|NP_243329.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           halodurans C-125]
 gi|11133072|sp|Q9KA27|HSLU_BACHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|10175083|dbj|BAB06182.1| ATP-dependent Clp protease (heat-shock protein) [Bacillus
           halodurans C-125]
          Length = 464

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 302/464 (65%), Gaps = 37/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ+ AKR+VAIALRNR+RR QL   LRDE+ PKNIL++GPTGVGK
Sbjct: 5   LTPRQIVERLDQYIVGQEGAKRSVAIALRNRYRRFQLEDKLRDEITPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +V+E +   V++QA
Sbjct: 65  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVETSVRLVKEEKMKGVKKQA 124

Query: 127 SINAEERILDALV-GKTATS---------------NT---------------REVFRKKL 155
              A +RI++ LV  K  T                NT               R     +L
Sbjct: 125 EEQANQRIVELLVPAKKKTQAYKNPLEMLFGQQQENTDHQETSAEQDTLTERRRRMSHQL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213
             GE+ D  + +EV + +     FD+  G+ +  +  N+ E+   +M   ++KK +++V+
Sbjct: 185 ALGELEDHYVTVEVEEQTPQF--FDMLQGSGMEQMGMNMQEMLGNMM-PKKRKKRKLTVR 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L  +E+ +LIDMD V ++++   E  GIVF+DE DKI  +   +   VSREGVQR
Sbjct: 242 EARRVLTEEEAQKLIDMDEVTQEAVSKAEQLGIVFIDEIDKIAGKGQQSA-DVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG ++TDH+LFI +GAFHV++P+DL+PE+QGRFP+RV L +L   D
Sbjct: 301 DILPIVEGSTVVTKYGPVSTDHMLFIGAGAFHVAKPSDLIPELQGRFPIRVELSNLTVDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL + ++ L+ QY  L++TEGI + FT++++  +A +A  +N    +IGARRL T++
Sbjct: 361 FVRILVEPDNALLKQYAALLETEGIKIVFTDEAVHKIATIATEVNQETENIGARRLHTLL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ER+LED+SF A D+  + +VI  EYV   +       D+  +IL
Sbjct: 421 ERLLEDLSFEAPDVNLEEIVITPEYVTEKLAAIAKNRDLSQYIL 464


>gi|295399804|ref|ZP_06809785.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111684|ref|YP_003990000.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y4.1MC1]
 gi|294978207|gb|EFG53804.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216785|gb|ADP75389.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y4.1MC1]
          Length = 465

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/463 (44%), Positives = 306/463 (66%), Gaps = 34/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 5   LTPRQIVEQLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++A
Sbjct: 65  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKERKMNEVKDRA 124

Query: 127 SINAEERILDALV-GK-----------------TATSNTREVFRK------------KLR 156
              A +R+++ LV GK                 T   +T + +              +L 
Sbjct: 125 EQQANKRLVELLVPGKQKQTMKNPFELLFGGVQTPQHDTNQAYEDEHIEQRRRQVAWQLA 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ D+ + IEV +      +F    G     +N+ +  + ++   RKK+     +   
Sbjct: 185 NGQLEDEIVTIEVEEQQPMFFDFLQGAGIEQMGMNVQDALNSLIPKRRKKRKLKVRE-AR 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRD 274
             L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI AR     +   VSREGVQRD
Sbjct: 244 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKI-ARSGQVASSADVSREGVQRD 302

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF
Sbjct: 303 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDF 362

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+ME
Sbjct: 363 VKILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTIME 422

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ F A D+    VVI  +YV   +G      ++  FIL
Sbjct: 423 KLLEDLLFEAPDITLDKVVITPQYVEQKLGGIVKNKNLSEFIL 465


>gi|163791336|ref|ZP_02185749.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
 gi|159873415|gb|EDP67506.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
          Length = 473

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/474 (43%), Positives = 302/474 (63%), Gaps = 48/474 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELD+YIIGQ  AK++VAIALRNR RR +L  D++ E+ PKN+L++G TGVG
Sbjct: 6   DMTPREIVAELDKYIIGQNMAKKSVAIALRNRQRRLKLSEDMQKEITPKNLLMIGATGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +  APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + +   V  Q
Sbjct: 66  KTEIARRLATIVQAPFVKVEATKFTEVGYIGRDVESMVRDLVESSIQIVEKQQHSNVYTQ 125

Query: 126 ASINAEERILDALVG---------------------------------------KTATSN 146
           A  NA ERI+  L+                                          A S 
Sbjct: 126 AERNAIERIVKILIPGIKKEKKQAASTNPFESMFKNMGVDPNQLAPQAEEEEEVTEAIST 185

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
            RE  ++++R+G + ++EI ++V    S     + P GA  G+  +    ++ +G+ R K
Sbjct: 186 DREKMKQQIRNGLLDEREITVQV---ESQKKAMNSPMGA--GLEQMGIDLNETLGALRPK 240

Query: 207 -KIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
            KI+  ++V+K     +++ES++L++ + +H  ++ + +N GI+F+DEFDKI +++  +G
Sbjct: 241 TKIKRTVTVKKAIDLFIQEESEKLVNQEDIHSMAVDLAQNSGIIFIDEFDKITSKNQNSG 300

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRFP+R
Sbjct: 301 T-VSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRFPIR 359

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L  L K DF  ILT+  + L+ QY  ++ TE + + FT +SI+ LA++A  +N    +
Sbjct: 360 VELDDLTKEDFVKILTEPNNALLKQYIAMLGTENVKITFTYESIERLAEIAYRVNQETDN 419

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+ F A D+Q   + I   YV   I     + D+  +IL
Sbjct: 420 IGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 473


>gi|119953094|ref|YP_945303.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia turicatae
           91E135]
 gi|119861865|gb|AAX17633.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia
           turicatae 91E135]
          Length = 451

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/449 (46%), Positives = 310/449 (69%), Gaps = 23/449 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TG+G
Sbjct: 9   NIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGIG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D VRE+
Sbjct: 69  KTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVREE 128

Query: 126 ASINAEERILDALVGKTATS---NT-----------REVFRKKLRDGEISDKEIDIEVAD 171
           AS  AEERI+D L+  +  S   NT           R  FRK+LR G+I D  IDI V+ 
Sbjct: 129 ASKRAEERIIDKLLKTSEGSENDNTSEEERKIRDKLRNKFRKQLRSGDIDDNLIDIYVSG 188

Query: 172 TSSDISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               +S  +I  G++   +++S   L + +    RKK+  + ++K    ++ +E ++L+D
Sbjct: 189 KMP-VSTIEIFSGSNFEEIDMSIGGLINNIF--DRKKRRELKIKKAREIIISEELEKLVD 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + +   +   VEN GIVF+DE DKIV ++ +GN I  SREGVQRD+LP+VEGS V+TKY
Sbjct: 246 HENIVEVAKSRVENMGIVFIDEIDKIVTKNRTGNDI--SREGVQRDILPIVEGSKVNTKY 303

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G ++T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+ +DF+ IL  T+++LI Q
Sbjct: 304 GIVDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVNDFKNILKHTKNSLIKQ 363

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  + K   + L F+E++ID +A++A ++N    ++GARRL  VME++L D+ F A   +
Sbjct: 364 YIAMFKVYNLTLTFSEEAIDRIAELAFDMNYEGENLGARRLHGVMEKILADLFFEAPGSK 423

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K   I+ +YV   I     + D+ ++I+
Sbjct: 424 LKKFEINLDYVNEKI-KINEQKDLNYYII 451


>gi|223040629|ref|ZP_03610899.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus
           RM3267]
 gi|222878087|gb|EEF13198.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus
           RM3267]
          Length = 440

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/446 (44%), Positives = 300/446 (67%), Gaps = 19/446 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   ++D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V+  +R++ R+
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKVEQREKNRD 120

Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     +++I+  L+    T            + E    +L +G++ D  I+IEV   S 
Sbjct: 121 KIDKYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEVVQNS- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               FD        +  + E F K++G S +  K  M V+     L  + SD+++DM+++
Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
             ++++  EN GI+F+DE DK VA  SGN      S+EGVQRDLLP+VEGS+V+TK+G+I
Sbjct: 236 KTEAVRRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAI 294

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY+ 
Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEA 354

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+KTE + L F +++I A+A +A N N  + DIGARRL TV+ERV+EDISF A++   +T
Sbjct: 355 LLKTENVELKFNDEAIRAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGET 414

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID   V   + D   + D+  +IL
Sbjct: 415 VEIDKALVEKRLSDVVKDQDLARYIL 440


>gi|167469785|ref|ZP_02334489.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           FV-1]
          Length = 377

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/376 (51%), Positives = 260/376 (69%), Gaps = 13/376 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  +K + ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEALKLLIEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALA 371
           EG+ ++FT + I  +A
Sbjct: 362 EGVTIEFTREGIRKIA 377


>gi|146081787|ref|XP_001464347.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania infantum
           JPCM5]
 gi|157866736|ref|XP_001681923.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania major
           strain Friedlin]
 gi|68125374|emb|CAJ03233.1| putative heat shock protein HslVU, ATPase,subunit HslU [Leishmania
           major strain Friedlin]
 gi|134068439|emb|CAM66729.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           infantum JPCM5]
 gi|322497750|emb|CBZ32826.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 423

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/433 (45%), Positives = 292/433 (67%), Gaps = 16/433 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGKT 
Sbjct: 3   PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE 62

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R +  E+A +
Sbjct: 63  IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL 122

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
            AE+RIL +L G        + FR+ LR G + D E+ +E+ +          P  AS  
Sbjct: 123 KAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------PKTASGE 170

Query: 189 ILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++  E  GI
Sbjct: 171 GVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGI 230

Query: 247 VFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGAF 304
           V +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILFI SGAF
Sbjct: 231 VVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAF 290

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+ L F +
Sbjct: 291 HSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFED 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA YV+  + 
Sbjct: 351 DALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVD 410

Query: 425 DFPSETDMYHFIL 437
               + D+  FIL
Sbjct: 411 KMVKKVDIKKFIL 423


>gi|289434563|ref|YP_003464435.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170807|emb|CBH27349.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 469

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151
           R +A  NAE+R++  L       +T T                           N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRNQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469


>gi|313633459|gb|EFS00284.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri
           FSL N1-067]
          Length = 469

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151
           R +A  NAE+R++  L       +T T                           N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469


>gi|154334422|ref|XP_001563458.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060479|emb|CAM42026.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 456

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/439 (44%), Positives = 294/439 (66%), Gaps = 16/439 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  +  PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPT
Sbjct: 30  LIRDMRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPT 89

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R + 
Sbjct: 90  GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQH 149

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            E+A + AE+RIL +L G        + FR+ LR G + D E+ +E+ +          P
Sbjct: 150 EEEAKVKAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------P 197

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             AS   + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++ 
Sbjct: 198 KTASGEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRA 257

Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298
            E  GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILF
Sbjct: 258 CEEDGIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILF 317

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFH  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+
Sbjct: 318 ICSGAFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGV 377

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L F +D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA Y
Sbjct: 378 DLIFEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSERFVIDAAY 437

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +     + D+  FIL
Sbjct: 438 VKRAVEKMIKKVDIKKFIL 456


>gi|315282104|ref|ZP_07870589.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL
           S4-120]
 gi|313614250|gb|EFR87909.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL
           S4-120]
          Length = 470

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/468 (42%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 5   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 64

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 65  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 124

Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149
               +A  NAE+R+                  L+AL G                  N R 
Sbjct: 125 LXXXKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDEPAEEEVDQELKNKRS 184

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  +N  +     M   +KKK +
Sbjct: 185 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMNGMQDALSGMFPAKKKKRK 242

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  GI+F+DE DKI +++ G    VSRE
Sbjct: 243 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGIIFIDEIDKIASKEGGGNAQVSRE 302

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 303 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 362

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 363 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 422

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FI 
Sbjct: 423 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIF 470


>gi|322489764|emb|CBZ25024.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 423

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/433 (45%), Positives = 292/433 (67%), Gaps = 16/433 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGKT 
Sbjct: 3   PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE 62

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R +  E+A +
Sbjct: 63  IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL 122

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
            AE+RIL +L G        + FR+ LR G + D E+ +E+ +          P  AS  
Sbjct: 123 KAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------PKTASGE 170

Query: 189 ILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++  E  GI
Sbjct: 171 GVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGI 230

Query: 247 VFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGAF 304
           V +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILFI SGAF
Sbjct: 231 VVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSGAF 290

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+ L F +
Sbjct: 291 HSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFED 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA YV+  + 
Sbjct: 351 DALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVIDAAYVKKAVD 410

Query: 425 DFPSETDMYHFIL 437
               + D+  FIL
Sbjct: 411 KMVKKVDIKKFIL 423


>gi|297624297|ref|YP_003705731.1| heat shock protein HslVU, ATPase subunit HslU [Truepera
           radiovictrix DSM 17093]
 gi|297165477|gb|ADI15188.1| heat shock protein HslVU, ATPase subunit HslU [Truepera
           radiovictrix DSM 17093]
          Length = 426

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/433 (49%), Positives = 300/433 (69%), Gaps = 8/433 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD+YIIGQ  AKR+VA+ALRN +RR+QL  +++ E+ PKNIL++GPTGV
Sbjct: 2   LNLTPLEIVEELDKYIIGQHKAKRSVAVALRNHFRRRQLAGEIQREVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APF+KVE TKFTE GYVGR+VE ++RDLV  +  +V+E + + V E
Sbjct: 62  GKTEIARRLARLARAPFVKVEATKFTETGYVGRDVESMVRDLVQASYVMVQEEQLERVSE 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+ NAEE +LDAL+    T   R   R+ L  G++ D+ I+IEV D             
Sbjct: 122 RAAKNAEEHLLDALL-PGGTEEGRAKMRELLEAGKLEDRSIEIEVKDERPQQMMMPG--- 177

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                LNL E+ S ++   R+ + + +V++    L  +E+++LID D V R++I   EN 
Sbjct: 178 MEEMGLNLQEMMSNLL-PKRRVRRKTTVREAREALRGEEAEKLIDHDEVSREAISRAENS 236

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GI+F+DE DK+   D+ +G  VS EGVQRDLLP+VEG+ V+T+YG + TDH+LFIA+GAF
Sbjct: 237 GIIFIDEIDKVTGSDNTSGPDVSGEGVQRDLLPIVEGTQVNTRYGQVKTDHVLFIAAGAF 296

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
             S+P+DL+PE+QGRFP+RV L+ L+ SDF+LILT  + +L  QY EL+K +G  L F +
Sbjct: 297 TASKPSDLIPELQGRFPIRVELEELSASDFQLILTKPQYSLTKQYTELLKVDGTRLRFDD 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
             I+A+A+ +  +N+ V DIGARRL TV+E VLED+SF A++L +  VVID  YV   + 
Sbjct: 357 SGIEAIAEYSARVNADVEDIGARRLHTVLETVLEDVSF-ATNLGD--VVIDRAYVEKKLE 413

Query: 425 DFPSETDMYHFIL 437
           D  S+ D+  ++L
Sbjct: 414 DIASDEDLSRYVL 426


>gi|294102500|ref|YP_003554358.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium
           colombiense DSM 12261]
 gi|293617480|gb|ADE57634.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/463 (46%), Positives = 319/463 (68%), Gaps = 35/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV  LDRYI+GQ+ AKRAVAIALRNR RR+ LP DL +E+ PKNIL+VGPTGVG
Sbjct: 10  DLTPRMIVECLDRYIVGQEKAKRAVAIALRNRMRRRNLPRDLANEVAPKNILMVGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+V+ +IRDLV+ A+ +V+  + +EV+  
Sbjct: 70  KTEIARRLADLVLAPFVKVEATKFTEVGYVGRDVDSMIRDLVETAVAMVKRVKIEEVQGP 129

Query: 126 ASINAEERILDALV-----------------GKTATSNT-------REVFRKK----LRD 157
           A   AE R++DAL+                 GK A           RE  R K    L+ 
Sbjct: 130 AEERAEWRLVDALLPRPERKTSMPDFMKIFSGKEAEETPPQEEDTIRESTRNKVYALLKA 189

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           G++ ++E+++EVA+++S      I GGA   S+G +N++E+ S ++    KK+ RM V  
Sbjct: 190 GKLDEREVELEVAESAS--MGIPILGGAGMDSMG-MNINEMLSGLLPKKTKKR-RMKVSD 245

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L  +E+++LIDM++V R+++   +  GI+F+DE DK+VAR + +G  VSREGVQRD
Sbjct: 246 GKKLLQAEEAEKLIDMESVAREALDKAQEEGIIFIDEIDKVVARGTSSGPDVSREGVQRD 305

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEGS+V TKYG++ TDHILFIA+GAF   +P+DL+PE+QGRFP+RV L+ L + + 
Sbjct: 306 LLPIVEGSTVQTKYGTVKTDHILFIAAGAFSSVKPSDLVPELQGRFPIRVELQPLGREEL 365

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + E++LI QY+ L+ TE I + F+ED+I+ +A +A  +N+ + +IGARRL T++E
Sbjct: 366 ARILVEPENSLIKQYQALLSTERIEVRFSEDAIEEIAAMAEKMNAEMENIGARRLHTMVE 425

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LE+ISF+A + Q + V I+A++V+  +     +TD+  ++L
Sbjct: 426 QLLEEISFTAPERQGEVVDINAQFVKERLSPLMEDTDLRKYLL 468


>gi|296273490|ref|YP_003656121.1| heat shock protein HslVU ATPase subunit HslU [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097664|gb|ADG93614.1| heat shock protein HslVU, ATPase subunit HslU [Arcobacter
           nitrofigilis DSM 7299]
          Length = 442

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/446 (44%), Positives = 306/446 (68%), Gaps = 17/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAK+ +A+ALRNR+RR QL  ++++E+MPKNIL++G TGV
Sbjct: 1   MNMTPKEIVKFLDDYVIGQNDAKKTIALALRNRYRRMQLAPEIQEEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++   PF+KVE +K+TE+G+VGR+VE +IRDLV  ++++V +   +++++
Sbjct: 61  GKTEIARRLAKMMSLPFVKVEASKYTEVGFVGRDVESMIRDLVFASMDLVTKEYEEKIQD 120

Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174
                  ++I++ LV    + A+ +++E F K       KL  GE+ DK I+IE+   + 
Sbjct: 121 GIEQEVNKQIIEKLVPHLPEGASESSKESFIKTFNKMEEKLLKGELEDKVIEIELPKKAH 180

Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231
            ++ +   P    + + ++ E  + ++GS  K KI+  V+ K   +L+R   S++LID +
Sbjct: 181 VEVIDSSFP----IDMTSMQESLNNMLGSLNKDKIKKEVKIKDARKLLRSGASEKLIDQE 236

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           ++  ++I+ VEN GI+F+DE DKI +  S      S+EGVQRDLLP+VEGS+V TKYG +
Sbjct: 237 SIKHEAIRRVENGGIIFIDEIDKIASGKSNQNQDPSKEGVQRDLLPIVEGSNVQTKYGQV 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFHVS+P+DLLPE+QGRFP+RV L +L++     ILT+T+++L+ QYK 
Sbjct: 297 KTDHILFIAAGAFHVSKPSDLLPELQGRFPLRVELNALDEEALYKILTNTKNSLLKQYKA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ EG+ L+F +++I + A ++V  N    DIGARRL TV+E+VLEDISF A +   +T
Sbjct: 357 LLEVEGVTLEFDDEAIHSFAHLSVEANQKAEDIGARRLHTVIEKVLEDISFDADEKNGET 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++I  + V   + D   + D   +IL
Sbjct: 417 IIITKKLVEEKLSDIVKDEDTARYIL 442


>gi|332297605|ref|YP_004439527.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           brennaborense DSM 12168]
 gi|332180708|gb|AEE16396.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           brennaborense DSM 12168]
          Length = 487

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/480 (41%), Positives = 308/480 (64%), Gaps = 53/480 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV++LD YIIGQQ+AK++VAIALRNR RR +LP D+R+E+ PKNIL++GPTGVG
Sbjct: 13  DLTPKQIVAQLDTYIIGQQNAKKSVAIALRNRSRRLKLPEDIREEIAPKNILMIGPTGVG 72

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TK+TE+GYVGR+VE ++RDL+ V  N+V+   ++ ++ Q
Sbjct: 73  KTEIARRLAKLCNAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEAQESLKSQ 132

Query: 126 A---------------SINAEERILDAL----------------------------VGKT 142
           A               S   E++ + AL                               T
Sbjct: 133 AESRVEEELLDLLLPGSRKEEKKSVQALPLSIFGTSVSESGDVSAASASDGSSSAAASDT 192

Query: 143 ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-----GILNLSELFS 197
             S+TRE FR  LR+G++ D+++++ V    +++ + +I  G ++     G+  ++ +FS
Sbjct: 193 LNSSTREKFRAMLREGKLEDRQVEVSVK-KQNNVPSMEIFAGGNMEDLEAGMRQITSMFS 251

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
                G+ +K  ++V++    L+ ++ DRLID D +  ++   VE  GI+F+DE DKI  
Sbjct: 252 ----GGKTRKKTVTVREARRILIEEQLDRLIDPDKIADEAKNRVEQMGIIFIDEIDKIAV 307

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           R    G  VSREGVQRD+LP+VEGS+V+TKYG ++T H+LFIA+GAF++S P+DL+PE+Q
Sbjct: 308 RGEHGGQDVSREGVQRDILPIVEGSTVNTKYGVVDTTHVLFIAAGAFNLSSPSDLIPELQ 367

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+RV L SL+  DF+ ILT+ ++ L  QY EL+ TE + + F E +ID ++ +A ++
Sbjct: 368 GRFPLRVELDSLHAEDFKRILTEPKNALTRQYAELLATENVTVRFDESAIDRMSFLAADV 427

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           NS   +IGARRL T+ME +LED+SF A +   + + I ++YV   + +     D+  +IL
Sbjct: 428 NSRAENIGARRLHTIMETLLEDLSFEADEHAGEVITITSDYVDERLKNIVENQDLSKYIL 487


>gi|298710304|emb|CBJ31925.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 517

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 294/441 (66%), Gaps = 14/441 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+++V +L+ +I+GQ DAKRAVAIALRNRWRR +L  DLR +++PKNIL++GPTG GK
Sbjct: 81  MKPQQMVDQLEEHIVGQSDAKRAVAIALRNRWRRAKLDEDLRGDVIPKNILMIGPTGCGK 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++ APFIKVE TKFTE+G+ G++V++II+DLV+V I + ++ +  E RE  
Sbjct: 141 TEIARRVAKMSQAPFIKVEATKFTEVGFHGQDVDRIIKDLVEVGITMTKKKQMAEHREAV 200

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS---------SDIS 177
               +  I+D LVG+ + +++RE F   L+ G + +  I + +   +         SD S
Sbjct: 201 KTTTDSIIIDCLVGEKSGASSRESFEDLLKKGALEEYNIKVPLNRNNTPDMPGVIFSDNS 260

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
             ++P    +    +  L +   G  RK++  M ++   P +   E ++ +DM  V RD+
Sbjct: 261 RANMPKVEDI----MQVLKASTGGKNRKQEQEMKIKDARPLIEDMEIEKRLDMAQVTRDA 316

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVF+DE DKI           S EGVQRDLLP++EGSSVST++G+I+T  IL
Sbjct: 317 VKAVEETGIVFIDEIDKICNAGERRSADASAEGVQRDLLPMIEGSSVSTRHGNIDTSFIL 376

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH  +P+D+L E+QGR P+RV LK L++ D   ILT+ ++NLI Q  E+MKTEG
Sbjct: 377 FIASGAFHSCKPSDMLAELQGRLPIRVQLKGLSEDDLYKILTEPKNNLIRQQVEIMKTEG 436

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDA 416
           + L FT+++I  +A V   +N TV +IGARRL TV+ER++E ISF AS+++E TVV +D 
Sbjct: 437 VDLQFTDEAIREIARVGAYVNKTVENIGARRLHTVLERIVETISFDASEMEEGTVVSVDI 496

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           + V+  + D    +D+  FI+
Sbjct: 497 DLVKERVSDMLEGSDLSKFII 517


>gi|319401456|gb|EFV89666.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           epidermidis FRI909]
          Length = 467

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKSLVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A ++++  LV     K A  N                                R   
Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L  G++ ++++ I+V               AS+G+L       + ++ +++M    K
Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +
Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|314936585|ref|ZP_07843932.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655204|gb|EFS18949.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 466

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/471 (41%), Positives = 309/471 (65%), Gaps = 52/471 (11%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT------------------------------REVFR 152
           +  A E+++  LV     K A +N                               R   R
Sbjct: 128 TQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEIR 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE------LFSKVMGSGRKK 206
           ++L  G++ ++++ I+V            PG  ++G+L  S+      + +++M   RK 
Sbjct: 188 QQLLAGKLEEEKVRIKVEQD---------PG--ALGMLGTSQNQQMQDMMNQLMPK-RKV 235

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           +  + V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +S +G  V
Sbjct: 236 EREVPVKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDV 295

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L
Sbjct: 296 SRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVEL 355

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           +SL  +DF  ILT+ + +LI QY+ L+KTE + ++F++++I  LA++A  +N    +IGA
Sbjct: 356 ESLTVNDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGA 415

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 416 RRLHTILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466


>gi|228475019|ref|ZP_04059747.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis SK119]
 gi|228271004|gb|EEK12392.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis SK119]
          Length = 466

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/471 (41%), Positives = 309/471 (65%), Gaps = 52/471 (11%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT------------------------------REVFR 152
           +  A E+++  LV     K A +N                               R   R
Sbjct: 128 TQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEIR 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE------LFSKVMGSGRKK 206
           ++L  G++ ++++ I+V            PG  ++G+L  S+      + +++M   RK 
Sbjct: 188 QQLIAGKLEEEKVRIKVEQD---------PG--ALGMLGTSQNQQMQDMMNQLM-PKRKV 235

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           +  + V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +S +G  V
Sbjct: 236 EREVPVKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDV 295

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L
Sbjct: 296 SRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVEL 355

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           +SL  +DF  ILT+ + +LI QY+ L+KTE + ++F++++I  LA++A  +N    +IGA
Sbjct: 356 ESLTVNDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGA 415

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 416 RRLHTILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466


>gi|268679660|ref|YP_003304091.1| heat shock protein HslVU, ATPase HslU [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617691|gb|ACZ12056.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 441

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 303/445 (68%), Gaps = 16/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P++IV+ LD YIIGQ  AK+A+AIALRNR+RR +L  ++ +E+MPKNIL++G TGV
Sbjct: 1   MNLTPKQIVAYLDEYIIGQFHAKKAIAIALRNRYRRLKLEGEMVEEVMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDL+  +IN+V+   +++ + 
Sbjct: 61  GKTEIARRMAKMLSLPFVKVEASKYTEVGFVGRDVESMVRDLMMASINLVKAEHKEKNQA 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
             +++ E  I++ L+           K     + E  R+KLRDGE++  +I+IE++  SS
Sbjct: 121 NIALHVERSIIEKLLPPLPKGVSEEKKADYEKSFERMRQKLRDGELNALKIEIEISQNSS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           D+ +  +P      ++ + E F K++GSG+   K  M+V++    L  + S++L+DM+ V
Sbjct: 181 DLGDSSLPPE----MIKVQESFIKILGSGQSSVKKEMTVKEAQEVLKTEASEKLLDMEAV 236

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++ +  EN GI+F+DE DKI    S  +    S+EGVQRDLLP+VEGS+V+TKYGS+ 
Sbjct: 237 KSEAKERAENGGIIFIDEIDKIAVNSSQSHRSDPSKEGVQRDLLPIVEGSNVTTKYGSLK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI++GAFH+S+P+DL+PE+QGRFP+RV L SL +     ILT  +++L+ QY+ L
Sbjct: 297 TDHILFISAGAFHLSKPSDLIPELQGRFPLRVELSSLTEEVLYQILTQPKNSLLRQYQAL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ L F +++I ++A +A   N    DIGARRL T++E+VLEDISF+A + + +T+
Sbjct: 357 LQTEGVELLFEDEAIRSIAKIAQITNEKTEDIGARRLHTIIEKVLEDISFTADEHKGETL 416

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +  E V   +       D   +IL
Sbjct: 417 HVTKELVHEKLDAIVESEDSSRYIL 441


>gi|213853085|ref|ZP_03382617.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 379

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/378 (50%), Positives = 264/378 (69%), Gaps = 13/378 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADV 373
           EG+ ++FT+  I  +A+ 
Sbjct: 362 EGVNIEFTDSGIKRIAEA 379


>gi|70726661|ref|YP_253575.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           haemolyticus JCSC1435]
 gi|123762301|sp|Q4L5V6|HSLU_STAHJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68447385|dbj|BAE04969.1| heat shock protein HslU [Staphylococcus haemolyticus JCSC1435]
          Length = 467

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 308/472 (65%), Gaps = 53/472 (11%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+LD YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLDEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKGLVKDEA 127

Query: 127 SINAEERILDALV---GKTATSNT--------------------------------REVF 151
              A E+++  LV    K A++N+                                R   
Sbjct: 128 VNKANEKLVKLLVPSMKKKASNNSNPLESLLGGAIPNFGNNDDEEEETPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L DG++ ++++ I+V            PG  ++G+L       + ++ +++M   RK
Sbjct: 188 KKQLLDGKLEEEKVRIKVEQD---------PG--ALGMLGTNQNQQMQDMMNQLM-PKRK 235

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +  + V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   ++ +G  
Sbjct: 236 VEREVPVKTARKILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNANSGQD 295

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV 
Sbjct: 296 VSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVE 355

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IG
Sbjct: 356 LESLTVDDFYRILTEPKLSLIKQYEALLQTEEVTVNFTKEAITRLAEMAYQVNQDTDNIG 415

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 416 ARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|329736606|gb|EGG72872.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU045]
          Length = 467

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A ++++  LV     K A  N                                R   
Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L  G++ ++++ I+V               AS+G+L       + ++ +++M    K
Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +
Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|293366782|ref|ZP_06613458.1| heat shock protein HslVU [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319083|gb|EFE59453.1| heat shock protein HslVU [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 470

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++A
Sbjct: 71  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A ++++  LV     K A  N                                R   
Sbjct: 131 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L  G++ ++++ I+V               AS+G+L       + ++ +++M    K
Sbjct: 191 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +
Sbjct: 357 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|27467848|ref|NP_764485.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866720|ref|YP_188402.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           epidermidis RP62A]
 gi|242242536|ref|ZP_04796981.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251810685|ref|ZP_04825158.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876314|ref|ZP_06285181.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis SK135]
 gi|32129624|sp|Q8CPH0|HSLU_STAES RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286705|sp|Q5HPT8|HSLU_STAEQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27315393|gb|AAO04527.1|AE016747_24 heat shock protein HslU [Staphylococcus epidermidis ATCC 12228]
 gi|57637378|gb|AAW54166.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           epidermidis RP62A]
 gi|242233963|gb|EES36275.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251805845|gb|EES58502.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295339|gb|EFA87866.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis SK135]
 gi|329724338|gb|EGG60850.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736195|gb|EGG72467.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU028]
          Length = 467

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKKSLVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A ++++  LV     K A  N                                R   
Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L  G++ ++++ I+V               AS+G+L       + ++ +++M    K
Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +
Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|269836345|ref|YP_003318573.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785608|gb|ACZ37751.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter
           thermophilus DSM 20745]
          Length = 485

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/466 (46%), Positives = 304/466 (65%), Gaps = 37/466 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  L+RYI+GQ  AKRAVAIALRNRWRRQ LP  LR E+MPKNIL++GPTGVGK
Sbjct: 22  MTPRQIVEALNRYIVGQDQAKRAVAIALRNRWRRQHLPEGLRQEVMPKNILMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A +A APF+KVE TKFTE+GYVGR+VE I+RDLV+V+I ++   R + VRE+A
Sbjct: 82  TEIARRVATIADAPFLKVEATKFTEVGYVGRDVETIVRDLVEVSIGMLHGQRLEAVREEA 141

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGE-ISDKE--------------------- 164
           S  A +R+ D L+ + A +N R   ++  R+ E I D E                     
Sbjct: 142 SSAAIQRLADLLIEQRA-ANRRGRRKETPREAEAIQDPEQRRRHEANVRRRLARQRARML 200

Query: 165 -------IDIEVADTSSDISNFD--IPGGASVGIL--NLSELFSKVMG--SGRKKKIRMS 211
                  ++ E  +  +D   FD  IP   + G+    L E FS+++   + R++  ++S
Sbjct: 201 DLLQKEALEDETVELETD-QEFDAIIPLEFAAGMSPEELHETFSELLEGFAPRRRSRKVS 259

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L + E++RL+D D+V  ++++  E +GI+F+DE DK++  +   G  VS EGV
Sbjct: 260 VREARQILTQQEANRLVDFDSVVEEAVRRAEEHGIIFIDEIDKLINPNGDYGPDVSGEGV 319

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRDLLP+VEGS V+T+YG I TDHILFIA+G+F   RP+DL+PE+QGRFP+RV L  L++
Sbjct: 320 QRDLLPIVEGSVVNTRYGPIKTDHILFIAAGSFQTVRPSDLIPELQGRFPIRVELDHLSE 379

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D   ILT  ++ L  QY+ L+  E + L FTED +  +A +A  +N+   DIGARRL T
Sbjct: 380 DDLFAILTQPDNALTRQYQALLAAEDVELVFTEDGLREIARIAAEVNARTEDIGARRLHT 439

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ERVLEDISF A D + + VVID +YV   + D  ++ D+  FIL
Sbjct: 440 IVERVLEDISFEAPDRRGERVVIDRDYVLQRVEDIAADDDLSKFIL 485


>gi|203284216|ref|YP_002221956.1| heat shock protein [Borrelia duttonii Ly]
 gi|203287755|ref|YP_002222770.1| heat shock protein [Borrelia recurrentis A1]
 gi|201083659|gb|ACH93250.1| heat shock protein [Borrelia duttonii Ly]
 gi|201084975|gb|ACH94549.1| heat shock protein [Borrelia recurrentis A1]
          Length = 451

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/445 (45%), Positives = 304/445 (68%), Gaps = 21/445 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TGVGKT 
Sbjct: 12  PREIVAELDKYIIGQSEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGVGKTE 71

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D V+E+AS 
Sbjct: 72  IARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVKEEASK 131

Query: 129 NAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEVADTSS 174
            AE+RI+D L+  +  S                R+ FRK+LR GE+ +  ID+ V+    
Sbjct: 132 RAEDRIIDKLLKNSENSENDNITDEEKRVRDKLRDKFRKQLRKGELDENLIDVYVSGKMP 191

Query: 175 DISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            +S  +I  G ++  +++S   L + +    RKK+  + ++K    ++ +E ++L+D + 
Sbjct: 192 -VSTIEIFSGGNLEEIDMSIGGLINNIF--DRKKRRELKIKKAREIIISEELEKLVDYEN 248

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +   VEN GIVF+DE DKIV ++   G  VSREGVQRD+LP+VEGS V+T+YG ++
Sbjct: 249 IVDIAKSRVENMGIVFIDEIDKIVTKNR-TGNDVSREGVQRDILPIVEGSKVNTRYGIVD 307

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T HILFIA+GAF++S+P+DL+PE+QGRFP++V L SL+  DF+ IL  T+++LI QY  +
Sbjct: 308 TSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELTSLSIDDFKNILKCTKNSLIKQYIAM 367

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K   + L FTE++ID +A++  N+N    ++GARRL  VME++L D+ F A   + K +
Sbjct: 368 FKVYNLTLTFTEEAIDRIAELTFNMNFEGENLGARRLHGVMEKILADLFFEAPGSKLKKI 427

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I+ +YV   I     + D+ ++I+
Sbjct: 428 EINLDYVDEKI-KINEQKDLNYYII 451


>gi|157737218|ref|YP_001489901.1| ATP-dependent protease ATP-binding subunit HslU [Arcobacter
           butzleri RM4018]
 gi|157699072|gb|ABV67232.1| heat shock protein HslVU, ATP-dependent protease subunit HslU
           [Arcobacter butzleri RM4018]
          Length = 442

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/446 (45%), Positives = 303/446 (67%), Gaps = 17/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++   L++E+MPKNIL++G TGV
Sbjct: 1   MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV   IN+V     +++++
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120

Query: 125 QASINAEERILDALVG---KTATSNTREVF-------RKKLRDGEISDKEIDIEVADTSS 174
           +      ++I++ LV    ++A+ + +E F        KKL +G + DK+I+IE+   + 
Sbjct: 121 KIDDEVNKKIIEKLVPPLPESASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180

Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231
            +I +  +P   S    ++ E  +K++GS  K KI+  V  K    L+R   S+ L+D +
Sbjct: 181 VEIIDSSLPFDMS----SMQESLNKMLGSLNKDKIKKEVTIKDAKILLRSVASESLLDQE 236

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +  ++++  EN GI+FLDE DKI +    NG   S+EGVQRDLLP+VEGSSV TK+G I
Sbjct: 237 AIKIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQI 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT+T+++L+ QYK 
Sbjct: 297 KTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ EG+ L+F +++I A A  +V  N    DIGARRL TV+E+V+EDISF A + +   
Sbjct: 357 LLEVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTK 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VV+  E V   + D     D   +IL
Sbjct: 417 VVVTKELVSDKLDDIVDNVDTARYIL 442


>gi|328957571|ref|YP_004374957.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp.
           17-4]
 gi|328673895|gb|AEB29941.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp.
           17-4]
          Length = 474

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 300/475 (63%), Gaps = 49/475 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELD+YIIGQ  AK++VA+ALRNR RR +L   ++ E+ PKN+L++G TGVG
Sbjct: 6   DMTPREIVAELDKYIIGQTMAKKSVAVALRNRQRRLKLDEAMQKEITPKNLLMIGATGVG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +  APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + +  +V  +
Sbjct: 66  KTEIARRLATIVRAPFVKVEATKFTEVGYIGRDVESMVRDLVEASIQIVEKQQYSQVYSR 125

Query: 126 ASINAEERILDALVG----------------------------------------KTATS 145
           A  NA ERI+  L+                                           A S
Sbjct: 126 AEKNAIERIVKILIPGIKKEKRQSTSSNPLESMFKNMGVDPNQLAPQAEEEEEEVTEAIS 185

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
             RE  ++++R+G + ++E+ I+V    S   + + P GA  G+  +    ++ +G+ R 
Sbjct: 186 TDRETMKQQIRNGLLDERELTIQV---ESQKKSMNSPMGA--GLEQMGIDLNETLGALRP 240

Query: 206 K---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           K   K  ++V+K     +++ES +L++ + +   ++ + +N GI+F+DEFDKI +++  +
Sbjct: 241 KSKVKRTVTVKKAIELFIQEESAKLVNQEDIQSMAVDLAQNAGIIFIDEFDKITSKNENS 300

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
           G  VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRFP+
Sbjct: 301 GT-VSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRFPI 359

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L  L K DF  ILT+ ++ L+ QY  ++ TE + + FT +SI+ LAD+A  +N    
Sbjct: 360 RVELDDLTKEDFVKILTEPDNALLKQYIAMLGTENVNITFTYESIERLADIAYQVNHETD 419

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++E++LED+ F A D+Q   + I   YV   I     + D+  +IL
Sbjct: 420 NIGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 474


>gi|72389062|ref|XP_844826.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma brucei
           TREU927]
 gi|62176325|gb|AAX70437.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei]
 gi|70801360|gb|AAZ11267.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261328093|emb|CBH11070.1| heat shock protein HslVU, ATPase subunit HslU,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 475

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/441 (46%), Positives = 288/441 (65%), Gaps = 19/441 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPT
Sbjct: 48  LVRNMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPT 107

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--RRD 120
           GVGKT I+RRLA+L  APFIKVE TKFTE+G+ GR+VE II DL   ++   +++  RR 
Sbjct: 108 GVGKTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNIMRRH 167

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E  E A   AE RIL AL G        + FR+ LR G + D E+ +E+ +      N  
Sbjct: 168 E--ETARQKAENRILKALAG------VSDGFREHLRSGALDDIEVIVELQEKKEKPKN-- 217

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              G + G+    E+ S + G  R + ++  M ++   P ++++E D+++D + V  +++
Sbjct: 218 --SGTNEGVFISLEIPSSI-GGQRPQTVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEAL 274

Query: 239 QMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHI 296
           +  E  GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK    I TD I
Sbjct: 275 RACEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKGNVQIKTDKI 334

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAFH  +P+D+L E+QGR P+RV LK L K DF  I+T+   NLI Q+  +MKTE
Sbjct: 335 LFICSGAFHSVKPSDMLAELQGRLPIRVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTE 394

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FT+D++  +A +A ++NSTV +IGARRL T+ E+V+E++SF   D + +T VIDA
Sbjct: 395 GVDLVFTDDALWEIASIAAHINSTVQNIGARRLITITEKVVEEVSFDGPDRKGETFVIDA 454

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YVR  +     + D+  FIL
Sbjct: 455 AYVRNSVESMMKKVDIKKFIL 475


>gi|187918169|ref|YP_001883732.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia hermsii
           DAH]
 gi|119861017|gb|AAX16812.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia
           hermsii DAH]
          Length = 451

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/449 (46%), Positives = 311/449 (69%), Gaps = 23/449 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TGVG
Sbjct: 9   NIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D VRE+
Sbjct: 69  KTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVREE 128

Query: 126 ASINAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEVAD 171
           AS  AEERI+D L+  +  S                R+ FRK+LR+G+I D  ID+ V+ 
Sbjct: 129 ASKRAEERIIDKLLKASENSENNNASDEENKVREKLRDKFRKQLRNGDIDDSLIDVYVSG 188

Query: 172 TSSDISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               +S  +I  G++   +++S   L + +    RKK+  + ++K    ++ +E ++L+D
Sbjct: 189 KMP-VSTIEIFSGSNFEEIDMSIGGLINNIF--DRKKRKELKIKKAREIIISEELEKLVD 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + +   +   VEN GIVF+DE DKIV ++ +GN   VSREGVQRD+LP+VEGS V+T+Y
Sbjct: 246 HENIVEIAKLRVENMGIVFIDEIDKIVTKNRTGN--DVSREGVQRDILPIVEGSKVNTRY 303

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I+T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+  DF+ IL  T+++LI Q
Sbjct: 304 GIIDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVGDFKNILKHTKNSLIKQ 363

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y E+ K   + L F+E++ID +A++A N+N    ++GARRL  VME++L D+ F A   +
Sbjct: 364 YIEMFKVYNLTLTFSEEAIDRIAELAFNMNFEGENLGARRLHGVMEKILADLFFEAPGSK 423

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K + I+ +YV   +     + D+ ++I+
Sbjct: 424 LKKIEINLDYVNEKV-KINEQKDLNYYII 451


>gi|223044232|ref|ZP_03614269.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           capitis SK14]
 gi|222442382|gb|EEE48490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           capitis SK14]
          Length = 467

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
              A ++++  LV     K +  N                                R   
Sbjct: 128 IAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L +G++  +++ I+V               A++G+L       + ++ +++M    K
Sbjct: 188 KKQLEEGKLEQEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +LI QY+ L++TE + ++FTE+++  LA++A  +N    +
Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|313638154|gb|EFS03411.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri
           FSL S4-171]
          Length = 456

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 298/448 (66%), Gaps = 33/448 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151
           R +A  NAE+R++  L       +T T                           N R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK + +
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKXT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++E++LED+ F A ++  ++V +   YV
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYV 451


>gi|315640718|ref|ZP_07895820.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           italicus DSM 15952]
 gi|315483473|gb|EFU73967.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           italicus DSM 15952]
          Length = 466

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/467 (43%), Positives = 302/467 (64%), Gaps = 43/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV ELD+YIIGQ+ AK++VA+ALRNR+RR QL   ++ E+ PKNIL++GPTGVGKT
Sbjct: 6   TPKEIVQELDQYIIGQEKAKKSVAVALRNRYRRLQLDEKMQHEVTPKNILMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IVR+ +   V +QA 
Sbjct: 66  EIARRLAKVVSAPFIKVEATKFTEVGYVGRDVESMVRDLVENAIQIVRKEQYSSVYQQAV 125

Query: 128 INAEERILDALV------GKTAT-----------------------------SNTREVFR 152
             A  R++ ALV       K +T                             SN + +F 
Sbjct: 126 KKANRRLVKALVPGIKKEQKQSTNPYEQMMSILNTANQPVEEPKEELTDEIRSNRQAIF- 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210
           ++L  G + ++E+ I++ +  +  +  +  G   +GI +L+E    +     KKKI   +
Sbjct: 185 EQLERGVLDNREVTIKIDEPKAQAAPMN-NGLEQMGI-DLNETLGALKP---KKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H  ++++ E  GI+F+DE DKI ++   N   VSREG
Sbjct: 240 TVKEARELLVQEESSKLVNDADIHSAALKLAEASGIIFIDEIDKITSKSQSNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG++ TDHILF+ASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 300 VQRDILPIVEGSQVNTKYGTLQTDHILFVASGAFHLSKPSDLIPELQGRFPIRVELDDLT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A  +N    +IGARRL 
Sbjct: 360 AEDFVKILTEPNNALIKQYIALLGTEHVSVIFTQEAIERIAQIAFQVNQETDNIGARRLH 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F A+D+Q   + I   YV   + D   + D+  +IL
Sbjct: 420 TILEKLLEDLLFEAADMQMAEITITEAYVNEKLNDIAQDEDLSRYIL 466


>gi|314933433|ref|ZP_07840798.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae
           C87]
 gi|313653583|gb|EFS17340.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae
           C87]
          Length = 467

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
              A ++++  LV     K +  N                                R   
Sbjct: 128 IAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L +G++  +++ I+V               A++G+L       + ++ +++M    K
Sbjct: 188 KKQLEEGKLEKEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +LI QY+ L++TE + ++FTE+++  LA++A  +N    +
Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|73662823|ref|YP_301604.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642438|sp|Q49X39|HSLU_STAS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|72495338|dbj|BAE18659.1| ATP-dependent protease ATPase subunit [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 470

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 308/477 (64%), Gaps = 60/477 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPRDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLTEEEKQEVAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+ARL GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++A
Sbjct: 68  TEIARRMARLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKALVQDEA 127

Query: 127 SINAEERI---------------------LDALVG--------------KTAT---SNTR 148
              A E++                     L++L G              +T T      R
Sbjct: 128 QDKANEKLVKLLVPSMKKKANNNTNSNNPLESLFGGSIPNFGQNNDDEEETPTDEVKTKR 187

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGS 202
              +++L +G++ D+++ ++V               A++G+L       + ++ +++M  
Sbjct: 188 SEIKQQLLNGQLEDEKVRLKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP- 235

Query: 203 GRKKKIRMSVQ-KCYPELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
             KKK+   V  K   +++ DE +D LID +T ++++I++ E  GI+F+DE DK+   + 
Sbjct: 236 --KKKVEREVPVKTARKILTDEFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQ 293

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            +G  VSR+GVQRD+LP++EGS V TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRF
Sbjct: 294 NSGQDVSRQGVQRDILPILEGSMVQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRF 353

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L+SL+  DF  ILT+ + +LI QY+ L++TE + + FT+++I  LA++A  +N  
Sbjct: 354 PIRVELESLSVEDFVRILTEPKLSLIKQYEALLQTEQVTVKFTDEAIKRLAEIAFQVNQD 413

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 TDNIGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|315636932|ref|ZP_07892156.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter
           butzleri JV22]
 gi|315478762|gb|EFU69471.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter
           butzleri JV22]
          Length = 442

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/446 (45%), Positives = 302/446 (67%), Gaps = 17/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++   L++E+MPKNIL++G TGV
Sbjct: 1   MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV   IN+V     +++++
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120

Query: 125 QASINAEERILDALVGK---TATSNTREVF-------RKKLRDGEISDKEIDIEVADTSS 174
           +      ++I++ LV     +A+ + +E F        KKL +G + DK+I+IE+   + 
Sbjct: 121 KIDDEVNKKIIEKLVPPLPDSASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180

Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231
            +I +  +P   S    ++ E  +K++GS  K KI+  V  K    L+R   S+ L+D +
Sbjct: 181 VEIIDSSLPFDMS----SMQESLNKMLGSLNKDKIKKEVTIKDAKILLRSVASESLLDQE 236

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +  ++++  EN GI+FLDE DKI +    NG   S+EGVQRDLLP+VEGSSV TK+G I
Sbjct: 237 AIKIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQI 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT+T+++L+ QYK 
Sbjct: 297 KTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ EG+ L+F +++I A A  +V  N    DIGARRL TV+E+V+EDISF A + +   
Sbjct: 357 LLEVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTK 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VV+  E V   + D     D   +IL
Sbjct: 417 VVVTKELVSDKLDDIVDNVDTARYIL 442


>gi|315178885|gb|ADT85799.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 406

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/412 (48%), Positives = 276/412 (66%), Gaps = 18/412 (4%)

Query: 37  RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           RW        LR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG
Sbjct: 2   RWEES-----LRVEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 56

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT-----------ATS 145
           + VE IIRDL DVA+ +  +   ++V+ +A   AEERILDAL+                S
Sbjct: 57  KEVETIIRDLTDVAVKMTHQQAMEKVKFRAEEQAEERILDALLPPARDAWGEAEHNDTAS 116

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +TR+ FRKKLR+G++ DKEI++ VA     +     PG   +    L  LF   +G   K
Sbjct: 117 STRQTFRKKLREGKLDDKEIEVNVAVAQMGVEIMAPPGMEEM-TNQLQGLFQN-LGGDTK 174

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
           KK ++ ++  +  L  +E+ +L++ + +   +I  VEN GIVF+DE DKI  R   +G  
Sbjct: 175 KKRKLKIKDAFKALTEEEAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGESSGPD 234

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRDLLPL+EGS+V+TK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV 
Sbjct: 235 VSREGVQRDLLPLIEGSTVTTKHGMVRTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 294

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L++L+  DF+ ILT+ +++L  QY  LMKTE + + FTED I  +AD A  +N T  +IG
Sbjct: 295 LEALSSDDFKRILTEPKASLTEQYMALMKTEEVDIAFTEDGIKQIADAAWQVNETTENIG 354

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TVMER++++ISF A++    ++ ID+ YVR  +G+   + D+  FIL
Sbjct: 355 ARRLHTVMERLMDEISFDATEKAGASLTIDSAYVRAKLGELVEDEDLSRFIL 406


>gi|289550955|ref|YP_003471859.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180487|gb|ADC87732.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
          Length = 467

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/469 (41%), Positives = 298/469 (63%), Gaps = 47/469 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
              A ++++  LV     K A  N                                R   
Sbjct: 128 VAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR- 209
           R++L  G++ D+++ I+V            PG   +   N ++    +M     KKK+  
Sbjct: 188 RQQLLAGKLEDEKVRIKVEQD---------PGALGMLGTNQNQQMQDMMNQLMPKKKVER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            + V+     L  D +D LID +T ++++I++ E  GI+F+DE DK+   +  +G  VSR
Sbjct: 239 EVPVKTARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           +GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+S
Sbjct: 299 QGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELES 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L  +DF  ILT+ + +L+ QY+ L+KTE + ++FT+ +I  LA++A  +N    +IGARR
Sbjct: 359 LTVNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 419 LHTILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467


>gi|315658457|ref|ZP_07911329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
 gi|315496786|gb|EFU85109.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
          Length = 467

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/469 (41%), Positives = 298/469 (63%), Gaps = 47/469 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
              A ++++  LV     K A  N                                R   
Sbjct: 128 VAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR- 209
           R++L  G++ D+++ I+V            PG   +   N ++    +M     KKK+  
Sbjct: 188 RQQLLAGKLEDEKVRIKVEQD---------PGALGMLGTNQNQQMQDMMNQLMPKKKVER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            + V+     L  D +D LID +T ++++I++ E  GI+F+DE DK+   +  +G  VSR
Sbjct: 239 EVPVKAARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           +GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+S
Sbjct: 299 QGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELES 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L  +DF  ILT+ + +L+ QY+ L+KTE + ++FT+ +I  LA++A  +N    +IGARR
Sbjct: 359 LTVNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 419 LHTILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467


>gi|295111498|emb|CBL28248.1| heat shock protein HslVU, ATPase subunit HslU [Synergistetes
           bacterium SGP1]
          Length = 468

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/467 (45%), Positives = 301/467 (64%), Gaps = 34/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P  I+  L+RYI+GQ  AKRAVAIALRNR RR+ LP ++  E+MPKNIL+VGPT
Sbjct: 4   LNSALTPSRIIEYLNRYIVGQDKAKRAVAIALRNRLRRRALPPEMAHEIMPKNILMVGPT 63

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA L+ APFIKVE TKFTE+GYVGR+VE IIRDL++  + +VR    + +
Sbjct: 64  GVGKTEIARRLATLSDAPFIKVEATKFTEVGYVGRDVETIIRDLMEFGVAMVRRRMLETM 123

Query: 123 REQASINAEERILDALVGK------------------------------TATSNTREVFR 152
           +  A   AE+R+LDA++ K                               A  NTR   R
Sbjct: 124 QAPALERAEQRLLDAMLPKKERRFSVPDLMKAFGASQEEAAEEDREEEGQAEENTRTRAR 183

Query: 153 --KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             + LR G + D+E+D+EV D  + I      G  S+G+ N+SE+ S ++   R +K  M
Sbjct: 184 LLEMLRAGRLDDREVDVEVTDAVTAIPVMGASGMDSMGV-NISEMLSGIL-PKRSRKRHM 241

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L  +E+++LID +T+ R+++++V+  GIVFLDE DK+V R    G  VSREG
Sbjct: 242 KVKEALRILQSEEAEKLIDKETLAREALEIVQEGGIVFLDELDKVVVRGGSTGPDVSREG 301

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRDLLP+VEGS V T+YG + TDHILFIA+GAF   +P+DL+PE+QGRFP+RV L+ L+
Sbjct: 302 VQRDLLPIVEGSVVQTRYGPVKTDHILFIAAGAFSGVKPSDLIPELQGRFPIRVELEPLS 361

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             + + ILT+ E++LI QY  L+ TEG  L FTE++   +A ++  +N+ + DIGARRL 
Sbjct: 362 WENLQQILTEPENSLIRQYTALISTEGTELVFTEEATAEIAKLSSKMNAEMEDIGARRLH 421

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ME++LE+ISFS  D   + + I A+ VR  +       D+  ++L
Sbjct: 422 TMMEQLLEEISFSVCDRSPERIEITADLVRERLAPLVENRDIRRYLL 468


>gi|308810919|ref|XP_003082768.1| heat shock protein HslU (ISS) [Ostreococcus tauri]
 gi|116061237|emb|CAL56625.1| heat shock protein HslU (ISS) [Ostreococcus tauri]
          Length = 944

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/424 (46%), Positives = 281/424 (66%), Gaps = 13/424 (3%)

Query: 26  AKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           AKRA A+ALRNRWRR ++ + +R+E+ PKNIL++GPTG GKT I+RRLA++  +PF+KVE
Sbjct: 522 AKRACAVALRNRWRRHRIESPMREEIAPKNILMIGPTGCGKTEIARRLAKITDSPFVKVE 581

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATS 145
            TKFTE+G+ GR+V+QIIRDLVD  I + ++  R +  +      E +ILD + G+ A  
Sbjct: 582 ATKFTEVGFHGRDVDQIIRDLVDNGIALTKQKMRAKFEKYVEELIENKILDFICGEGAND 641

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
            TRE FR   RDG + D+ I++++ D +      D P G  + I  L     K+ G+ + 
Sbjct: 642 ETREAFRSLYRDGTLDDRMIEVDLPDNAGQGMKID-PSGGPIPIHELVIKVDKLFGNRKS 700

Query: 206 K-KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNG 263
             K +M+V +C P +   E D L+  +T+ +++I  VEN GIVF+DE DKIV+  D  +G
Sbjct: 701 TTKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITSVENDGIVFIDEIDKIVSSSDYRHG 760

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
              S EGVQRDLLP++EGS VSTK+G++NTDHILF+ SGAFH ++P+D+L E+QGR P+R
Sbjct: 761 ADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFVCSGAFHSAKPSDMLAELQGRLPIR 820

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V LK L++ D   ILT+ E N+I Q K LMKTEGI L FT ++I+ +A +A  +N TV +
Sbjct: 821 VELKGLSEHDLYRILTEPEMNMIAQQKALMKTEGIDLVFTNEAIEHIAKLAHKVNKTVEN 880

Query: 384 IGARRLQTVMERVLEDISFSASDLQEK----------TVVIDAEYVRLHIGDFPSETDMY 433
           IGARRL TV+ER++E++SFSA +   K           V ID + V   +G    + D+ 
Sbjct: 881 IGARRLHTVLERIVEELSFSAPEKYTKFIADGGAGELVVTIDVKDVDEALGSMLKKDDLS 940

Query: 434 HFIL 437
            F+L
Sbjct: 941 RFVL 944


>gi|152990746|ref|YP_001356468.1| ATP-dependent protease ATP-binding subunit HslU [Nitratiruptor sp.
           SB155-2]
 gi|151422607|dbj|BAF70111.1| ATP-dependent protease HslVU, ATPase subunit HslU [Nitratiruptor
           sp. SB155-2]
          Length = 443

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 302/445 (67%), Gaps = 14/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIVS LD YIIGQ++AK+ +AIALRNR+RR QLP +++DE+ PKNIL++G TGV
Sbjct: 1   MDLTPKEIVSYLDEYIIGQKEAKKVIAIALRNRYRRMQLPKEMQDEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD---- 120
           GKT I+RRLA+    PF+KVE +K+TE+G+VGR+VE ++RDLV  A+ +V+E  ++    
Sbjct: 61  GKTEIARRLAKSLDLPFVKVEASKYTEVGFVGRDVESMVRDLVANALVLVKEIHKERHAK 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTSS 174
           ++ E  +    E++L  L    +    RE        +++L  GE+ + +I+IE+   S 
Sbjct: 121 DIEEYVTKKILEKLLPPLPKMASEEKKREYQKSYEKMKERLEKGELDNLKIEIELPKHSV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
            + + ++P   +    +++++F+  +G  ++K K  +SV++    L  + S+ L+DM+ +
Sbjct: 181 SLEDTNLPPELAHAQESIAKIFT--LGLNKEKIKKEVSVKEAKELLKNEASEALLDMEQI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            +++++  +  GI+F+DE DK+    S  G    S+EGVQRDLLP+VEGS+VSTK+G I 
Sbjct: 239 KQEALKKAQEEGIIFIDEIDKVAVSSSSQGRQDPSKEGVQRDLLPIVEGSTVSTKWGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P DL+PE+QGRFP+RV L SL++     ILT T+++LI QY+ L
Sbjct: 299 TDHILFIAAGAFHLSKPCDLIPELQGRFPLRVELDSLDEEALYKILTMTKNSLIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  EG+ L+F +D++ A+A  A + N  + DIGARRL TV+E +LE+ISF A + + +T+
Sbjct: 359 LAVEGVKLEFNDDALRAIAKYAHSANQKIEDIGARRLHTVIENLLEEISFEADEHKGETI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID  YV   +G+  +  D+  +IL
Sbjct: 419 TIDKAYVDEKLGEVVANEDLAKYIL 443


>gi|257869688|ref|ZP_05649341.1| heat shock protein HslVU [Enterococcus gallinarum EG2]
 gi|257803852|gb|EEV32674.1| heat shock protein HslVU [Enterococcus gallinarum EG2]
          Length = 465

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/467 (43%), Positives = 300/467 (64%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SP+EIV ELD+YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTGVG
Sbjct: 5   NISPKEIVKELDQYIVGQTSAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+K+E TKFTE+GYVGR+VE +IRDLV+ AI IV++ +   VR Q
Sbjct: 65  KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMIRDLVENAIQIVKKEQYKNVRLQ 124

Query: 126 ASINAEERILDALV-----------------------GKTATS----------NTREVFR 152
           A   A  R++  LV                       G+ A            + R+   
Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKSANPYEQMMNMFNPGQQAEEPKEELTDEIRSNRQAIY 184

Query: 153 KKLRDGEISDKEIDIEVAD--TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
           ++L  G + ++E+ I+V +  T S + N    G   +GI +L+E     +   +K +  +
Sbjct: 185 EQLEKGLLDNREVTIQVDEPKTQSPMMNN---GLEQMGI-DLNETLG-ALKPQKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H  ++++ E+ GI+FLDE DKI ++   +G  VSREG
Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSAALRLAESSGIIFLDEIDKITSKSQQSG-EVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 299 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  + LI QY  L+ TE + + FT ++I  +A++A  +N    +IGARRLQ
Sbjct: 359 KEDFVKILTEPNNALIKQYIALLGTENVTVTFTLEAIQKIAEIAFQVNRDTDNIGARRLQ 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F ASD+Q   + I   YV   +     + D+  +IL
Sbjct: 419 TILEKLLEDLLFEASDMQMGEITITEAYVEDKLASIAKDEDLSRYIL 465


>gi|223993423|ref|XP_002286395.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana
           CCMP1335]
 gi|220977710|gb|EED96036.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana
           CCMP1335]
          Length = 557

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/458 (43%), Positives = 302/458 (65%), Gaps = 27/458 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T    P E+V+EL+R+I+GQ  AK+AVAIA+RNRWRR+QLP  L  E+ P+N+L++GPTG
Sbjct: 103 TIALRPTEVVTELNRHIVGQSSAKKAVAIAMRNRWRRRQLPPALLKEVTPRNVLMIGPTG 162

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++RR+A L+ APF+KVE TKFTE+GY GR+V+QI+RDL+DV++ + ++ + +++R
Sbjct: 163 CGKTEVARRMASLSDAPFLKVEATKFTEVGYHGRDVDQIVRDLMDVSMALTKKRQTEKLR 222

Query: 124 EQASINAEERILDALVGKTATS---NTREVFRKKLRDGEISDKEIDIEVADT-------- 172
            +A    EERILD L+G   T    ++R+ FR  LRDG + D E++++V +         
Sbjct: 223 GEAKGLVEERILDILIGPDGTGTNKSSRDSFRSMLRDGLLEDHELEVDVPENLGQGGGKD 282

Query: 173 -SSDISNFDIPGGASVGILNLSELFSKVMG---------SGRKKKIRMSVQKCYPELMRD 222
               +  F     + + +  +S+L  K+ G         + RKK      ++   E+  +
Sbjct: 283 GEGAVVAFGGDASSGMNVQAMSDLIRKLGGGGGQRRGPPTERKKMAISEAREVILEIELE 342

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RD-SGNGIGVSREGVQRDLLPLVE 280
           +    +D+    ++++   E  GIVF+DE DKI + RD +      S EGVQRDLLPLVE
Sbjct: 343 KLLEKVDL---KKEAVAAAEESGIVFIDEIDKICSSRDYNSRSADASAEGVQRDLLPLVE 399

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G+++STKYG++NTD++LFIASGAFH  +P+D+LPE+QGR P+RV L  L + D   ILT+
Sbjct: 400 GTTISTKYGNVNTDYMLFIASGAFHAVKPSDMLPELQGRLPIRVELNGLTEEDLYKILTE 459

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            E+NL+ Q  EL+KTEG+ L F +D++  +A  A  LN TV +IGARRL TVMER++E+I
Sbjct: 460 PEANLVRQQIELIKTEGVTLSFEDDALREIAKTAALLNRTVENIGARRLHTVMERIMEEI 519

Query: 401 SFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A+++++   VV+  + V+  + D  + +D+  +IL
Sbjct: 520 SFQAAEMEKGDDVVVTKKLVKERLSDVLTTSDLSKYIL 557


>gi|307720795|ref|YP_003891935.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978888|gb|ADN08923.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas
           autotrophica DSM 16294]
          Length = 442

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/446 (45%), Positives = 297/446 (66%), Gaps = 17/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+I Q+DAK+ +A+ALR R+RR QL  +L++E+ PKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDNYVIAQKDAKKTIALALRTRYRRMQLDDELKNEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRRDE 121
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I+IV+   E    E
Sbjct: 61  GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVNSISIVKAEQEKANKE 120

Query: 122 VREQASINA-EERILDALVGKTATSNTR------EVFRKKLRDGEISDKEIDIEVADTSS 174
             E   IN   E++L  L    + S         E   K++  GE+ DK I++E+   + 
Sbjct: 121 KIENYIINKITEKLLPPLPAGASESKKDDYQRLLEAMEKRIESGEMDDKVIELEIEKLNV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232
           + ++ ++P   +     + E FSKV  +  K+  K  ++V+     L ++ + +L+DM  
Sbjct: 181 EFNDTNLPPEMA----KVQESFSKVFATINKEDNKKEVTVKDAKILLRQEAATKLLDMTR 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291
           V+ ++++  EN GI+FLDE DKI   +   G    S+EGVQRDLLP+VEGSSVSTKYG+I
Sbjct: 237 VNAEALRRAENGGIIFLDEIDKIALSEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTI 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L +     ILT T+S+L+ QY+ 
Sbjct: 297 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELEALTEDTLYKILTQTQSSLLKQYQA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+  EG+ L F ++++ A+A +A   N T  DIGARRL TV+E +LEDISF+A++ + K 
Sbjct: 357 LLAVEGMELIFEDEAVRAIAKLAHRANETAEDIGARRLHTVLELILEDISFNAAEYKGKE 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
            +I A+ V   + D   + D+  +IL
Sbjct: 417 FIITAKLVHEKLDDAVEDEDLSRYIL 442


>gi|242373545|ref|ZP_04819119.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348908|gb|EES40510.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 467

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
              A ++++  LV     K +  N                                R   
Sbjct: 128 ISKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +K+L +G++  +++ I+V               A++G+L       + ++ +++M    K
Sbjct: 188 KKQLDEGKLEKEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   +SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+SL+  DF  ILT+ + +LI QY+ L++TE + ++F+E+++  LA++A  +N    +
Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFSEEAVKRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|229549933|ref|ZP_04438658.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|255972716|ref|ZP_05423302.1| heat shock protein HslU [Enterococcus faecalis T1]
 gi|312951576|ref|ZP_07770472.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0102]
 gi|229304946|gb|EEN70942.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|255963734|gb|EET96210.1| heat shock protein HslU [Enterococcus faecalis T1]
 gi|310630542|gb|EFQ13825.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0102]
 gi|315152402|gb|EFT96418.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0031]
          Length = 467

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 298/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R+ 
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRQT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|295113043|emb|CBL31680.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus sp.
           7L76]
 gi|315145125|gb|EFT89141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2141]
 gi|315160541|gb|EFU04558.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0645]
 gi|323480807|gb|ADX80246.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus
           faecalis 62]
          Length = 467

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 296/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 211 SV--QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           SV  ++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 SVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|257085105|ref|ZP_05579466.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257416171|ref|ZP_05593165.1| heat shock protein HslU [Enterococcus faecalis AR01/DG]
 gi|257419373|ref|ZP_05596367.1| heat shock protein hslU [Enterococcus faecalis T11]
 gi|256993135|gb|EEU80437.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257157999|gb|EEU87959.1| heat shock protein HslU [Enterococcus faecalis ARO1/DG]
 gi|257161201|gb|EEU91161.1| heat shock protein hslU [Enterococcus faecalis T11]
          Length = 467

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|327535211|gb|AEA94045.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           faecalis OG1RF]
          Length = 467

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNLAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|29376200|ref|NP_815354.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus
           faecalis V583]
 gi|227518831|ref|ZP_03948880.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227553448|ref|ZP_03983497.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|255975768|ref|ZP_05426354.1| heat shock protein HslU [Enterococcus faecalis T2]
 gi|256619141|ref|ZP_05475987.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200]
 gi|256762577|ref|ZP_05503157.1| heat shock protein HslU [Enterococcus faecalis T3]
 gi|256959057|ref|ZP_05563228.1| heat shock protein HslU [Enterococcus faecalis DS5]
 gi|256961850|ref|ZP_05566021.1| heat shock protein HslU [Enterococcus faecalis Merz96]
 gi|256965047|ref|ZP_05569218.1| heat shock protein HslU [Enterococcus faecalis HIP11704]
 gi|257079088|ref|ZP_05573449.1| heat shock protein HslU [Enterococcus faecalis JH1]
 gi|257082473|ref|ZP_05576834.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|257086666|ref|ZP_05581027.1| heat shock protein HslU [Enterococcus faecalis D6]
 gi|293382915|ref|ZP_06628833.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           R712]
 gi|293389596|ref|ZP_06634053.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           S613]
 gi|294781641|ref|ZP_06746977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           PC1.1]
 gi|300861163|ref|ZP_07107250.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270940|ref|ZP_07552223.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4248]
 gi|307273145|ref|ZP_07554391.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0855]
 gi|307274880|ref|ZP_07556043.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2134]
 gi|307277987|ref|ZP_07559071.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0860]
 gi|307289185|ref|ZP_07569141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0109]
 gi|307291918|ref|ZP_07571787.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0411]
 gi|312899493|ref|ZP_07758823.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0470]
 gi|312903386|ref|ZP_07762566.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0635]
 gi|312907615|ref|ZP_07766606.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312910232|ref|ZP_07769079.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 516]
 gi|62286875|sp|Q834K4|HSLU_ENTFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|29343663|gb|AAO81424.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus
           faecalis V583]
 gi|227073744|gb|EEI11707.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227177424|gb|EEI58396.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|255968640|gb|EET99262.1| heat shock protein HslU [Enterococcus faecalis T2]
 gi|256598668|gb|EEU17844.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200]
 gi|256683828|gb|EEU23523.1| heat shock protein HslU [Enterococcus faecalis T3]
 gi|256949553|gb|EEU66185.1| heat shock protein HslU [Enterococcus faecalis DS5]
 gi|256952346|gb|EEU68978.1| heat shock protein HslU [Enterococcus faecalis Merz96]
 gi|256955543|gb|EEU72175.1| heat shock protein HslU [Enterococcus faecalis HIP11704]
 gi|256987118|gb|EEU74420.1| heat shock protein HslU [Enterococcus faecalis JH1]
 gi|256990503|gb|EEU77805.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|256994696|gb|EEU81998.1| heat shock protein HslU [Enterococcus faecalis D6]
 gi|291079580|gb|EFE16944.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           R712]
 gi|291081213|gb|EFE18176.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           S613]
 gi|294451337|gb|EFG19803.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           PC1.1]
 gi|300850202|gb|EFK77952.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496916|gb|EFM66464.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0411]
 gi|306499894|gb|EFM69255.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0109]
 gi|306505384|gb|EFM74570.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0860]
 gi|306508328|gb|EFM77435.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2134]
 gi|306510130|gb|EFM79154.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0855]
 gi|306512438|gb|EFM81087.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4248]
 gi|310626643|gb|EFQ09926.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|310633262|gb|EFQ16545.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0635]
 gi|311289505|gb|EFQ68061.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 516]
 gi|311293363|gb|EFQ71919.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0470]
 gi|315027188|gb|EFT39120.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2137]
 gi|315034049|gb|EFT45981.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0017]
 gi|315037057|gb|EFT48989.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0027]
 gi|315147342|gb|EFT91358.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4244]
 gi|315164094|gb|EFU08111.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1302]
 gi|315168956|gb|EFU12973.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1341]
 gi|315169810|gb|EFU13827.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1342]
 gi|315575786|gb|EFU87977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0309B]
 gi|315577628|gb|EFU89819.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0630]
 gi|315580438|gb|EFU92629.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0309A]
 gi|329571618|gb|EGG53299.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1467]
          Length = 467

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|229545744|ref|ZP_04434469.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|256853203|ref|ZP_05558573.1| heat shock protein HslVU [Enterococcus faecalis T8]
 gi|229309194|gb|EEN75181.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|256711662|gb|EEU26700.1| heat shock protein HslVU [Enterococcus faecalis T8]
 gi|315029305|gb|EFT41237.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4000]
          Length = 467

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKKQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|315150458|gb|EFT94474.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0012]
          Length = 467

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQDLLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|302191328|ref|ZP_07267582.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           iners AB-1]
 gi|309805719|ref|ZP_07699759.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|309809302|ref|ZP_07703171.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871368|ref|ZP_07731463.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873946|ref|ZP_07733982.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875447|ref|ZP_07735450.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|325911979|ref|ZP_08174381.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 143-D]
 gi|325912848|ref|ZP_08175226.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 60-B]
 gi|329921323|ref|ZP_08277761.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 1401G]
 gi|308164972|gb|EFO67215.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|308170415|gb|EFO72439.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311088958|gb|EFQ47399.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090495|gb|EFQ48903.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093021|gb|EFQ51370.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476164|gb|EGC79328.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 143-D]
 gi|325477841|gb|EGC80975.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 60-B]
 gi|328934615|gb|EGG31119.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 1401G]
          Length = 464

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/467 (42%), Positives = 295/467 (63%), Gaps = 43/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
            +A +R++  LV                                         + R    
Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 183

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210
            KL+ G + + E+ + V   +      D+ G      +++S L   +M    KK++R  +
Sbjct: 184 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREG
Sbjct: 238 SVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 298 VQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLR 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL 
Sbjct: 358 ESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 418 TILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 464


>gi|259500639|ref|ZP_05743541.1| heat shock protein HslVU [Lactobacillus iners DSM 13335]
 gi|315653526|ref|ZP_07906447.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           iners ATCC 55195]
 gi|259168023|gb|EEW52518.1| heat shock protein HslVU [Lactobacillus iners DSM 13335]
 gi|315489217|gb|EFU78858.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           iners ATCC 55195]
          Length = 471

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/467 (42%), Positives = 295/467 (63%), Gaps = 43/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 11  TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 70

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 71  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 130

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
            +A +R++  LV                                         + R    
Sbjct: 131 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 190

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210
            KL+ G + + E+ + V   +      D+ G      +++S L   +M    KK++R  +
Sbjct: 191 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTL 244

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREG
Sbjct: 245 SVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREG 304

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 305 VQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLR 364

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL 
Sbjct: 365 ESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLA 424

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 425 TILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 471


>gi|312872351|ref|ZP_07732421.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092174|gb|EFQ50548.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 465

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 295/468 (63%), Gaps = 44/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151
            +A +R++  LV                                          + R   
Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDDEDDEELDDQIIDKRASV 183

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209
             KL+ G + + E+ + V   +      D+ G      +++S L   +M    KK++R  
Sbjct: 184 ADKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRT 237

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSRE
Sbjct: 238 LSVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSRE 297

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L
Sbjct: 298 GVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPL 357

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL
Sbjct: 358 RESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRL 417

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 418 ATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 465


>gi|282927596|ref|ZP_06335212.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A10102]
 gi|282590599|gb|EFB95676.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A10102]
          Length = 467

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVEAARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|220917978|ref|YP_002493282.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955832|gb|ACL66216.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 480

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/472 (45%), Positives = 316/472 (66%), Gaps = 40/472 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155
           A   AEE++LDAL               G+ A                 +  RE  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207
           R G + D  +++E+++ +  +  F  PG      G    + NL  + L   + G GRK+K
Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265
            +++V++    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G   G  
Sbjct: 249 RKVNVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV 
Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L + D   IL +  ++L+ QY  L+ TEG+ +   ++++D +A +A  +N  + +IG
Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDEAVDEIARIAAEVNERMENIG 428

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480


>gi|21282866|ref|NP_645954.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486093|ref|YP_043314.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651823|ref|YP_186129.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160912|ref|YP_493844.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194962|ref|YP_499762.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267744|ref|YP_001246687.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393802|ref|YP_001316477.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221376|ref|YP_001332198.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|161509420|ref|YP_001575079.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142044|ref|ZP_03566537.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253315610|ref|ZP_04838823.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|257795690|ref|ZP_05644669.1| heat shock protein HslVU [Staphylococcus aureus A9781]
 gi|258415914|ref|ZP_05682184.1| heat shock protein HslVU [Staphylococcus aureus A9763]
 gi|258421676|ref|ZP_05684600.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9719]
 gi|258423905|ref|ZP_05686790.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9635]
 gi|258444592|ref|ZP_05692921.1| heat shock protein HslVU [Staphylococcus aureus A8115]
 gi|258447575|ref|ZP_05695719.1| heat shock protein HslVU [Staphylococcus aureus A6300]
 gi|258449417|ref|ZP_05697520.1| heat shock protein HslVU [Staphylococcus aureus A6224]
 gi|258452553|ref|ZP_05700559.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A5948]
 gi|258454796|ref|ZP_05702760.1| heat shock protein HslVU [Staphylococcus aureus A5937]
 gi|262048148|ref|ZP_06021035.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262051316|ref|ZP_06023539.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           930918-3]
 gi|269202870|ref|YP_003282139.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282892742|ref|ZP_06300977.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A8117]
 gi|282916514|ref|ZP_06324272.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus D139]
 gi|282920498|ref|ZP_06328219.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9765]
 gi|283770318|ref|ZP_06343210.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024247|ref|ZP_06378645.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848249|ref|ZP_06788996.1| heat shock protein HslVU [Staphylococcus aureus A9754]
 gi|295406190|ref|ZP_06815997.1| heat shock protein HslVU [Staphylococcus aureus A8819]
 gi|296274812|ref|ZP_06857319.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297244418|ref|ZP_06928301.1| heat shock protein HslVU [Staphylococcus aureus A8796]
 gi|23821703|sp|Q8NWZ7|HSLU_STAAW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56748978|sp|Q6G9V9|HSLU_STAAS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286700|sp|Q5HGH8|HSLU_STAAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123003474|sp|Q2FZ28|HSLU_STAA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123763305|sp|Q2FHI4|HSLU_STAA3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|172048864|sp|A6QGF4|HSLU_STAAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043923|sp|A6U172|HSLU_STAA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043924|sp|A5ISD8|HSLU_STAA9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043925|sp|A8Z3T4|HSLU_STAAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21204305|dbj|BAB95002.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus MW2]
 gi|49244536|emb|CAG42965.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57286009|gb|AAW38103.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126886|gb|ABD21400.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202520|gb|ABD30330.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740813|gb|ABQ49111.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946254|gb|ABR52190.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374176|dbj|BAF67436.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368229|gb|ABX29200.1| T01 family HslU component of HsIUV peptidase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257789662|gb|EEV28002.1| heat shock protein HslVU [Staphylococcus aureus A9781]
 gi|257839250|gb|EEV63724.1| heat shock protein HslVU [Staphylococcus aureus A9763]
 gi|257842362|gb|EEV66787.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9719]
 gi|257845934|gb|EEV69963.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9635]
 gi|257850085|gb|EEV74038.1| heat shock protein HslVU [Staphylococcus aureus A8115]
 gi|257853766|gb|EEV76725.1| heat shock protein HslVU [Staphylococcus aureus A6300]
 gi|257857405|gb|EEV80303.1| heat shock protein HslVU [Staphylococcus aureus A6224]
 gi|257859771|gb|EEV82613.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A5948]
 gi|257863179|gb|EEV85943.1| heat shock protein HslVU [Staphylococcus aureus A5937]
 gi|259160691|gb|EEW45712.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           930918-3]
 gi|259163714|gb|EEW48269.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262075160|gb|ACY11133.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269940745|emb|CBI49127.1| putative ATP-dependent protease ATP-bindingsubunit [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319001|gb|EFB49353.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus D139]
 gi|282594160|gb|EFB99147.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9765]
 gi|282764739|gb|EFC04864.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A8117]
 gi|283460465|gb|EFC07555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470469|emb|CAQ49680.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816936|gb|ADC37423.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus 04-02981]
 gi|294825049|gb|EFG41471.1| heat shock protein HslVU [Staphylococcus aureus A9754]
 gi|294968778|gb|EFG44800.1| heat shock protein HslVU [Staphylococcus aureus A8819]
 gi|297178448|gb|EFH37694.1| heat shock protein HslVU [Staphylococcus aureus A8796]
 gi|298694546|gb|ADI97768.1| ATP-dependent protease ATP-binding subunit of heat shock protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332860|gb|ADL23053.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312829648|emb|CBX34490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131047|gb|EFT87031.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198494|gb|EFU28823.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329313924|gb|AEB88337.1| ATP-dependent protease ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727195|gb|EGG63651.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727822|gb|EGG64273.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 467

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|253733508|ref|ZP_04867673.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|300912181|ref|ZP_07129624.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381182|ref|ZP_07363835.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253728562|gb|EES97291.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|300886427|gb|EFK81629.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302751077|gb|ADL65254.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340165|gb|EFM06106.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|320140929|gb|EFW32776.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144355|gb|EFW36121.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441032|gb|EGA98739.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus O11]
 gi|323443901|gb|EGB01512.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus O46]
          Length = 470

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 357 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|329733679|gb|EGG70007.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 467

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMINQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|189501893|ref|YP_001957610.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Amoebophilus asiaticus 5a2]
 gi|189497334|gb|ACE05881.1| hypothetical protein Aasi_0471 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 463

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/459 (44%), Positives = 303/459 (66%), Gaps = 31/459 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ LD+YI+GQQ AKR VAIALRNRWRR  + +D++ ++ P NIL++G TGVGK
Sbjct: 8   LTPREIVASLDKYIVGQQSAKRNVAIALRNRWRRMHVQSDIKADITPNNILMIGATGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+++V+ +R +EVR++A
Sbjct: 68  TEIARRLAQVADAPFVKVEASKFTEVGYVGRDVEGMVRDLVEQAVSMVKAAREEEVRDKA 127

Query: 127 SINAEERILDALV-------GKTATSN---------------TREVFRKKLRDGEISDKE 164
           +   E+ ILDA++       G+    N               TRE FR+K+R+G++ +++
Sbjct: 128 TQQVEDIILDAVIPPVSRMTGEETVENNLNSLEENDFNLSEQTRERFRQKIRNGDLDERK 187

Query: 165 IDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
             IE+A  SS      + GG  +    + NL ++ S ++    K + ++++ +    L+ 
Sbjct: 188 --IEIAINSSSTMGISMIGGGMMDESALSNLQDMISNMIPKKPKTR-KVTIAEAKQLLLP 244

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVE 280
           +E ++LIDMD+V  ++++  +  GI+F+DE DKI      G+G  VSREGVQRDLLP+VE
Sbjct: 245 EEINKLIDMDSVKEEALEKAKYNGIIFIDEMDKIAGSSYRGSGPDVSREGVQRDLLPIVE 304

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V+TKYG I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF  IL +
Sbjct: 305 GSTVNTKYGVITTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELDSLSKEDFCCILKE 364

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY  L + E + L F E +I+ +A+ A  LN  + +IGARRL TVM  +L + 
Sbjct: 365 PKNALTKQYVALFEAENVKLTFEEKAIEEIAEKAFTLNQQMENIGARRLHTVMSHLLNEY 424

Query: 401 SFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F   D    E+ + I  E V   + +     ++  +IL
Sbjct: 425 LFDVPDKIEAEQEIKITKELVNEKLSELVKNKNLNEYIL 463


>gi|257422533|ref|ZP_05599523.1| heat shock protein hslVU [Enterococcus faecalis X98]
 gi|257164357|gb|EEU94317.1| heat shock protein hslVU [Enterococcus faecalis X98]
 gi|315155674|gb|EFT99690.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0043]
          Length = 467

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 296/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K    N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQVGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|253731873|ref|ZP_04866038.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724283|gb|EES93012.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 470

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 357 VELDSLSVEDFVRILTELKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|49483417|ref|YP_040641.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|282903809|ref|ZP_06311697.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905572|ref|ZP_06313427.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908547|ref|ZP_06316377.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282918953|ref|ZP_06326688.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C427]
 gi|283957997|ref|ZP_06375448.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295427741|ref|ZP_06820373.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|56749032|sp|Q6GHI1|HSLU_STAAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49241546|emb|CAG40232.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|282316763|gb|EFB47137.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C427]
 gi|282327609|gb|EFB57892.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330864|gb|EFB60378.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595427|gb|EFC00391.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790146|gb|EFC28963.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128099|gb|EFG57733.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315194141|gb|EFU24534.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 467

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|15924244|ref|NP_371778.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926837|ref|NP_374370.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus N315]
 gi|156979575|ref|YP_001441834.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255006041|ref|ZP_05144642.2| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|54037322|sp|P63797|HSLU_STAAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|54041268|sp|P63796|HSLU_STAAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221613|sp|A7X1N1|HSLU_STAA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|13701054|dbj|BAB42349.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus N315]
 gi|14247024|dbj|BAB57416.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721710|dbj|BAF78127.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu3]
          Length = 467

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|82750855|ref|YP_416596.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus RF122]
 gi|123549064|sp|Q2YXL4|HSLU_STAAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|82656386|emb|CAI80805.1| ATP-dependent protease ATP-binding subunit of heat shock protein
           [Staphylococcus aureus RF122]
          Length = 467

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPLR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|297591301|ref|ZP_06949939.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576187|gb|EFH94903.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 470

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 357 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|257876705|ref|ZP_05656358.1| heat shock protein HslVU [Enterococcus casseliflavus EC20]
 gi|257810871|gb|EEV39691.1| heat shock protein HslVU [Enterococcus casseliflavus EC20]
          Length = 465

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTGVG
Sbjct: 5   NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR Q
Sbjct: 65  KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124

Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152
           A   A  R++  LV    K    NT                              R+   
Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++L  G + ++E+ I+V +  +     +  G   +GI +L+E     +   +K +  ++V
Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNQAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREGVQ
Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L K 
Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL T+
Sbjct: 361 DFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|315172226|gb|EFU16243.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1346]
          Length = 467

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150
           QA   A +R++  LV       K A  N                             R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209
             ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI  
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   +   VSR
Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQSSGEVSR 298

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARR
Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|257867813|ref|ZP_05647466.1| heat shock protein HslVU [Enterococcus casseliflavus EC30]
 gi|257874140|ref|ZP_05653793.1| heat shock protein HslVU [Enterococcus casseliflavus EC10]
 gi|257801896|gb|EEV30799.1| heat shock protein HslVU [Enterococcus casseliflavus EC30]
 gi|257808304|gb|EEV37126.1| heat shock protein HslVU [Enterococcus casseliflavus EC10]
          Length = 465

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTGVG
Sbjct: 5   NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR Q
Sbjct: 65  KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124

Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152
           A   A  R++  LV    K    NT                              R+   
Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++L  G + ++E+ I+V +  +     +  G   +GI +L+E     +   +K +  ++V
Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNKAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREGVQ
Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L K 
Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL T+
Sbjct: 361 DFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|325570909|ref|ZP_08146558.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156313|gb|EGC68496.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           casseliflavus ATCC 12755]
          Length = 465

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTGVG
Sbjct: 5   NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR Q
Sbjct: 65  KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124

Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152
           A   A  R++  LV    K    NT                              R+   
Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++L  G + ++E+ I+V +  +     +  G   +GI +L+E     +   +K +  ++V
Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNQAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREGVQ
Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L K 
Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL T+
Sbjct: 361 DFVKILTEPNNALVKQYIALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|258434832|ref|ZP_05688906.1| heat shock protein HslVU [Staphylococcus aureus A9299]
 gi|257849193|gb|EEV73175.1| heat shock protein HslVU [Staphylococcus aureus A9299]
          Length = 467

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADIYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|282910826|ref|ZP_06318629.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325431|gb|EFB55740.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WBG10049]
          Length = 467

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|293568159|ref|ZP_06679495.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1071]
 gi|291589149|gb|EFF20961.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1071]
          Length = 466

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/466 (43%), Positives = 298/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153
            NAE+R++  LV       K +T+              NT              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G +  +E+ IEV D        +  G   +GI +L+E  S +     KKK+   ++
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLSALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|257425308|ref|ZP_05601733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427969|ref|ZP_05604367.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430602|ref|ZP_05606984.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433362|ref|ZP_05609720.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436204|ref|ZP_05612251.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914031|ref|ZP_06321818.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924076|ref|ZP_06331752.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C101]
 gi|293501063|ref|ZP_06666914.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510025|ref|ZP_06668733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526611|ref|ZP_06671296.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271765|gb|EEV03903.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274810|gb|EEV06297.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278730|gb|EEV09349.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281455|gb|EEV11592.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284486|gb|EEV14606.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M876]
 gi|282314048|gb|EFB44440.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322099|gb|EFB52423.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920683|gb|EFD97746.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096068|gb|EFE26329.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466969|gb|EFF09487.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M809]
          Length = 467

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 414 IGARRLHTILEKMLEDLSFEAPRMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|312438367|gb|ADQ77438.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 470

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +  A E+++  LV     K + +N                                R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVAVETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL   DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 357 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|197123189|ref|YP_002135140.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           sp. K]
 gi|196173038|gb|ACG74011.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp.
           K]
          Length = 480

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/472 (45%), Positives = 315/472 (66%), Gaps = 40/472 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155
           A   AEE++LDAL               G+ A                 +  RE  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207
           R G + D  +++E+++ +  +  F  PG      G    + NL  + L   + G GRK+K
Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265
            ++ V++    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G   G  
Sbjct: 249 RKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV 
Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L + D   IL +  ++L+ QY  L+ TEG+ +   +D++D +A +A  +N  + +IG
Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENIG 428

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480


>gi|297208100|ref|ZP_06924531.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|296887343|gb|EFH26245.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC 51811]
          Length = 470

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151
           +    E+++  LV     K + +N                                R   
Sbjct: 131 TAKVNEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205
           +++L +G++  +++ I+V            PG  ++G+L       + E+ +++M    K
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   ++V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G
Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R
Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L SL+  DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +
Sbjct: 357 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|86159115|ref|YP_465900.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775626|gb|ABC82463.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 480

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/472 (45%), Positives = 315/472 (66%), Gaps = 40/472 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIIMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155
           A   AEE++LDAL               G+ A                 +  R+  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAPAEEPQAAPASHPAGSAAGARDKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207
           R G + D  +++E+++ S  +  F  PG      G    + NL  + L   + G GRK+K
Sbjct: 189 RAGTLDDDLVEVELSERSMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265
            ++ V++    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G   G  
Sbjct: 249 RKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV 
Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L + D   IL +  ++L+ QY  L+ TEG+ +   +D++D +A +A  +N  + +IG
Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENIG 428

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDATYVRDRLQGIAQDEDLSRYIL 480


>gi|227551197|ref|ZP_03981246.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257896180|ref|ZP_05675833.1| heat shock protein HslU [Enterococcus faecium Com12]
 gi|293377180|ref|ZP_06623388.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           PC4.1]
 gi|227179665|gb|EEI60637.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257832745|gb|EEV59166.1| heat shock protein HslU [Enterococcus faecium Com12]
 gi|292644200|gb|EFF62302.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           PC4.1]
          Length = 466

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 296/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153
            NAE+R++  LV       K +T+                              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G + ++E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|257898817|ref|ZP_05678470.1| heat shock protein HslU [Enterococcus faecium Com15]
 gi|293570280|ref|ZP_06681349.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E980]
 gi|257836729|gb|EEV61803.1| heat shock protein HslU [Enterococcus faecium Com15]
 gi|291609687|gb|EFF38948.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E980]
          Length = 466

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 296/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153
            NAE+R++  LV       K +T+                              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G + ++E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|118475468|ref|YP_892168.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414694|gb|ABK83114.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 440

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 300/446 (67%), Gaps = 19/446 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAKR +A+ALRNR+RR +L   ++++++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V++ +R++  +
Sbjct: 61  GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRK----------KLRDGEISDKEIDIEVADTSS 174
           + +   E++IL+ L+       + +  R           KL+ GE+    I++++     
Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDI----- 175

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233
           D S F+  G     +  + E F KV+G   KK  +    K   E +++E S++++DM+++
Sbjct: 176 DQSTFEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKNEASEKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
             ++++  EN GI+F+DE DK VA  SGN      S+EGVQRDLLP+VEGS+VSTK+G++
Sbjct: 236 KTEALKRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSNVSTKFGNL 294

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV+L SL++     ILT  +++L+ QYK 
Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVNLDSLDEKALYEILTKPKNSLLSQYKA 354

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+  EG+ L+F+++SI  +A V  N N  V DIGARRL TV+E+VLEDISF A   + + 
Sbjct: 355 LLGVEGVELEFSDESIKEIAKVTQNTNQKVEDIGARRLHTVIEKVLEDISFDADSYKNEK 414

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V I  E V   +GD     D+  +IL
Sbjct: 415 VTITKELVDKKLGDICQNEDLAKYIL 440


>gi|257884851|ref|ZP_05664504.1| heat shock protein HslU [Enterococcus faecium 1,231,501]
 gi|261207610|ref|ZP_05922295.1| heat shock protein HslU [Enterococcus faecium TC 6]
 gi|289565122|ref|ZP_06445575.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           D344SRF]
 gi|294614815|ref|ZP_06694710.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1636]
 gi|294617494|ref|ZP_06697125.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1679]
 gi|257820689|gb|EEV47837.1| heat shock protein HslU [Enterococcus faecium 1,231,501]
 gi|260077993|gb|EEW65699.1| heat shock protein HslU [Enterococcus faecium TC 6]
 gi|289163129|gb|EFD10976.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           D344SRF]
 gi|291592277|gb|EFF23891.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1636]
 gi|291596234|gb|EFF27496.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1679]
          Length = 466

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/466 (43%), Positives = 297/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153
            NAE+R++  LV       K +T+              NT              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G +  +E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|69246763|ref|ZP_00604111.1| Heat shock protein HslU [Enterococcus faecium DO]
 gi|257878026|ref|ZP_05657679.1| heat shock protein HslU [Enterococcus faecium 1,230,933]
 gi|257881188|ref|ZP_05660841.1| heat shock protein HslU [Enterococcus faecium 1,231,502]
 gi|257889775|ref|ZP_05669428.1| heat shock protein HslU [Enterococcus faecium 1,231,410]
 gi|257892288|ref|ZP_05671941.1| heat shock protein HslU [Enterococcus faecium 1,231,408]
 gi|258616483|ref|ZP_05714253.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus
           faecium DO]
 gi|260559076|ref|ZP_05831262.1| heat shock protein HslU [Enterococcus faecium C68]
 gi|293563428|ref|ZP_06677877.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1162]
 gi|314938038|ref|ZP_07845348.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a04]
 gi|314941976|ref|ZP_07848837.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133C]
 gi|314948771|ref|ZP_07852143.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0082]
 gi|314951789|ref|ZP_07854828.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133A]
 gi|314991804|ref|ZP_07857262.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133B]
 gi|314995845|ref|ZP_07860932.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a01]
 gi|68195117|gb|EAN09577.1| Heat shock protein HslU [Enterococcus faecium DO]
 gi|257812254|gb|EEV41012.1| heat shock protein HslU [Enterococcus faecium 1,230,933]
 gi|257816846|gb|EEV44174.1| heat shock protein HslU [Enterococcus faecium 1,231,502]
 gi|257826135|gb|EEV52761.1| heat shock protein HslU [Enterococcus faecium 1,231,410]
 gi|257828667|gb|EEV55274.1| heat shock protein HslU [Enterococcus faecium 1,231,408]
 gi|260074833|gb|EEW63149.1| heat shock protein HslU [Enterococcus faecium C68]
 gi|291604689|gb|EFF34174.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1162]
 gi|313589949|gb|EFR68794.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a01]
 gi|313593615|gb|EFR72460.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133B]
 gi|313596068|gb|EFR74913.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133A]
 gi|313599228|gb|EFR78073.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133C]
 gi|313642613|gb|EFS07193.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a04]
 gi|313644837|gb|EFS09417.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0082]
          Length = 466

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153
            NAE+R++  LV       K +T+              NT              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G +  +E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|71424579|ref|XP_812843.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|71657076|ref|XP_817058.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70877671|gb|EAN90992.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
 gi|70882227|gb|EAN95207.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 474

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 286/439 (65%), Gaps = 16/439 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR  +  ++R+E+ PKNIL++GPT
Sbjct: 48  LIRNMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPT 107

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   ++   +++   + 
Sbjct: 108 GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQN 167

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
              A   AE+RIL AL G        + FR+ LR G + D E+ +E+ + +         
Sbjct: 168 EAVARQKAEDRILKALAG------VSDGFREHLRSGALDDIEVMVELQEKAPKPKT---- 217

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             A  G+    +L    +G+ + + ++  + ++   P + ++E ++++D + V  ++++ 
Sbjct: 218 -AAGEGVFIAIDL-PGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRA 275

Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298
            E  GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   I TD ILF
Sbjct: 276 CEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILF 335

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFH  +P+D+L E+QGR P+RV LK L   DF  I+T+ + NLI Q+  +M+TEG+
Sbjct: 336 ICSGAFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGV 395

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FTED++  +A VA ++NSTV +IGARRL T+ E+V+E+ISF   D + +T VIDAEY
Sbjct: 396 KLVFTEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEY 455

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  + +   + D+  FIL
Sbjct: 456 VKKSVENMVKKVDIKKFIL 474


>gi|222823762|ref|YP_002575336.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari
           RM2100]
 gi|222538984|gb|ACM64085.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari
           RM2100]
          Length = 439

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 304/447 (68%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ LD Y+IGQ++AK+ +AIALRNR+RR QL  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVNFLDDYVIGQKNAKKIIAIALRNRYRRMQLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE ++RDL + A+N+V++  +++ +E
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLANAALNLVKQEEKEKNQE 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+           +    N+ E  R KL+ G++ D  I++E++ +  
Sbjct: 121 KINEYIENKILEKLLPPLPKGISEEKEQEYKNSLEKMRVKLKAGDLDDSIIEVEISQSVF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQK-CYPELMRDESDRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     L ++ S++++DM+
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKVKDAKNALAQEASEKILDME 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DK+ V+  + N    S+EGVQRDLLP+VEGS++ TK+G 
Sbjct: 233 SIKSEALRRAENEGIIFIDEIDKVAVSSSNSNRQDPSKEGVQRDLLPIVEGSTIQTKFGP 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEDALYAILTRPKNSLLTQYI 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           EL+KTE + L F + +I  +A +A   N  + DIGARRL TV+E++LEDISF A +   K
Sbjct: 353 ELLKTEKVELVFEDAAIKEIAKIASKANEEMQDIGARRLHTVVEKLLEDISFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ID   V++ +GD     D+  +IL
Sbjct: 413 VYKIDDFKVQVKLGDIVENKDLARYIL 439


>gi|322824663|gb|EFZ29997.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 475

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 286/439 (65%), Gaps = 16/439 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR  +  ++R+E+ PKNIL++GPT
Sbjct: 48  LIRNMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPT 107

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   ++   +++   + 
Sbjct: 108 GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQN 167

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
              A   AE+RIL AL G        + FR+ LR G + D E+ +E+ + +         
Sbjct: 168 EAVARQKAEDRILKALAG------VSDGFREHLRSGALDDIEVMVELQEKAPKPKT---- 217

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             A  G+    +L    +G+ + + ++  + ++   P + ++E ++++D + V  ++++ 
Sbjct: 218 -AAGEGVFIAIDL-PGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRA 275

Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298
            E  GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   I TD ILF
Sbjct: 276 CEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILF 335

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFH  +P+D+L E+QGR P+RV LK L   DF  I+T+ + NLI Q+  +M+TEG+
Sbjct: 336 ICSGAFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGV 395

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FTED++  +A VA ++NSTV +IGARRL T+ E+V+E+ISF   D + +T VIDAEY
Sbjct: 396 KLVFTEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEY 455

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  + +   + D+  FIL
Sbjct: 456 VKKSVENMVKKVDIKKFIL 474


>gi|78777574|ref|YP_393889.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498114|gb|ABB44654.1| Heat shock protein HslU [Sulfurimonas denitrificans DSM 1251]
          Length = 442

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 297/445 (66%), Gaps = 15/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+I QQ+AK+ +A+ALR R+RR QL  +L+ ++ PKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDEYVISQQNAKKTIALALRTRYRRMQLSPELQSDITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I IV+  + +E RE
Sbjct: 61  GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVASIAIVKAEKEEENRE 120

Query: 125 QASINAEERILDALVGKT---ATSNTRE-------VFRKKLRDGEISDKEIDIEVADTSS 174
           +       +I++ L+      A+ + ++       V  +++  GE+ DK I +EV     
Sbjct: 121 KIDNYILNKIVEKLLPPLPLGASESKKDDYQRLLSVMEERVLSGEMDDKIIQLEVQKIHV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233
           + ++ ++P   +    + S +FS++     KK++ +   K    ++RDE S +LID   +
Sbjct: 181 EFNDTNLPPEMAKVQESFSRVFSQMNKEDNKKELSVKDAKI---ILRDEASAKLIDSTHI 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + ++++  EN GI+FLDE DKI   +   G    S+EGVQRDLLP+VEGSSVSTKYG+IN
Sbjct: 238 NVEALRRAENGGIIFLDEIDKIAISEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTIN 297

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+ +P+DL+PE+QGRFP+RV L+SLN+     ILT T+++L+ QY+ L
Sbjct: 298 TDHILFIAAGAFHLCKPSDLIPELQGRFPLRVELESLNEETLYKILTQTKNSLLRQYEAL 357

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  EG+ L F +++I A+A +A   N    DIGARRL TV+E++LED+SFSA++ ++K  
Sbjct: 358 LSVEGMKLTFEDEAIKAIAKLAHRANEIAEDIGARRLHTVIEKILEDVSFSANEYKDKEF 417

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ ++ V   +       D+  +IL
Sbjct: 418 IVTSKLVHEKLDTIVENDDLSRYIL 442


>gi|38046590|gb|AAR09158.1| ATP-dependent hslVU protease [Mannheimia varigena]
          Length = 399

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/402 (48%), Positives = 275/402 (68%), Gaps = 13/402 (3%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           DLR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRD
Sbjct: 1   DLRQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 60

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDAL----------VGKTATSNTREVFRKKL 155
           L DV++ +VR+   ++ + +A   AE+RILD L          V ++   +TR+ FRKKL
Sbjct: 61  LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNQSTRQAFRKKL 120

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G++ DKEI+I+VA   S       P G       L  LF   M   + KK +M ++  
Sbjct: 121 REGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDA 177

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDL
Sbjct: 178 LKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDL 237

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF 
Sbjct: 238 LPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKDDFE 297

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+ A  +N    +IGARRL TV+ER
Sbjct: 298 RILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVNEKTENIGARRLHTVLER 357

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++ ISF AS+ + + +VID  YV   + D     D+  FIL
Sbjct: 358 LMDGISFDASERRGEKIVIDENYVSEALNDVVENEDLSRFIL 399


>gi|157165582|ref|YP_001466813.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus
           13826]
 gi|112801315|gb|EAT98659.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           concisus 13826]
          Length = 440

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPREIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLEKSLQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   + N+V+  + ++ ++
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASYNLVKNEQSEKNQD 120

Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174
           + +   EE+I+  L+    K A+   +  + K       +LR+GE+ +  I+IEV     
Sbjct: 121 KINAYIEEKIVSKLLPPLPKGASEEKQAEYAKSYDKMLNRLRNGELDELSIEIEVQQNPL 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +  +   P  A      + E F K++G G K  K  M V+     L  + +D+++D+++V
Sbjct: 181 EAGSNVPPDMAQ-----MQESFIKIIGIGGKNIKKEMKVKDAKKALQSEANDKILDLESV 235

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++  EN GI+F+DE DK+ V   S N    S+EGVQRDLLP+VEGS+V+TK+G++ 
Sbjct: 236 KTEALRRAENEGIIFIDEIDKVAVGSGSSNRQDPSKEGVQRDLLPIVEGSNVNTKFGNLK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT  +++L+ QY  L
Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEDALYQILTQPKNSLLKQYIAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TE + L+F +++I  +A +A   N  + DIGARRL TV+ERV+EDISF AS+   + +
Sbjct: 356 LSTENVELEFDDEAIKEIARIAHAANEKMEDIGARRLHTVIERVIEDISFEASEKSGEKI 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +  E V+  + D   + D+  +IL
Sbjct: 416 NVTKELVKERLKDVVEDQDLARYIL 440


>gi|191638402|ref|YP_001987568.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           casei BL23]
 gi|190712704|emb|CAQ66710.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           casei BL23]
 gi|327382431|gb|AEA53907.1| hypothetical protein LC2W_1574 [Lactobacillus casei LC2W]
 gi|327385630|gb|AEA57104.1| hypothetical protein LCBD_1607 [Lactobacillus casei BD-II]
          Length = 469

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VS
Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGAR
Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|257887686|ref|ZP_05667339.1| heat shock protein HslU [Enterococcus faecium 1,141,733]
 gi|257823740|gb|EEV50672.1| heat shock protein HslU [Enterococcus faecium 1,141,733]
          Length = 466

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/466 (42%), Positives = 295/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVNELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+   APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKTVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153
            NAE+R++  LV       K +T+                              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G + ++E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|294622309|ref|ZP_06701352.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           U0317]
 gi|291598201|gb|EFF29299.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           U0317]
          Length = 466

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153
            NAE+R++  LV       K +T+              NT              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G +  +E+ IEV D        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEMTITEAYVDDKLGSIAANEDLSRYIL 466


>gi|295696108|ref|YP_003589346.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM
           2912]
 gi|295411710|gb|ADG06202.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM
           2912]
          Length = 462

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/460 (44%), Positives = 304/460 (66%), Gaps = 30/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP ++R+E++PKNIL++GPTGVG
Sbjct: 5   QLTPKQIVAELDKYIVGQREAKRAVAVALRNRYRRNRLPDEMREEVVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLARL  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI +VR+ R  EV  +
Sbjct: 65  KTELARRLARLVRAPFVKVEATKFTEVGYVGRDVDSMVRDLVETAIRMVRQERMAEVELE 124

Query: 126 ASINAEERILDALV----GKTATSNT------------------------REVFRKKLRD 157
           A   AEER++  L     G T   N                         RE   ++L  
Sbjct: 125 ARKAAEERLIAILAHEGDGPTGFRNPLEMLFNPGQEQSRPREPDSKDSARREEVARRLAA 184

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ ++ I+IEV D++    +    G      + + +L  + +   RK+K +++V++   
Sbjct: 185 GELEEQVIEIEVEDSTLPFVDVGGTGQFEEMGMQIQDLLGQFLPR-RKRKRKVTVREARH 243

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L + E+ +LIDMD V  ++++  E  GI+F+DE DKI  +D  +G  VSREGVQRD+LP
Sbjct: 244 ILTQQEAQKLIDMDEVQAEAVRRAEQSGIIFIDEIDKIAGKDR-HGPDVSREGVQRDILP 302

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L SL+  DFR I
Sbjct: 303 IVEGSTVMTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRIELHSLSAEDFRRI 362

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+    LI QY  L+ TEG+ + FT+ ++  LA++A  +N    +IGARRL T+ME+++
Sbjct: 363 LTEPRHALIKQYTALLATEGVNVVFTDAAVQRLAELAAAVNQQTENIGARRLNTLMEKLM 422

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+ F A D+    + I  EYV   +     + D+  +IL
Sbjct: 423 EDLFFEAPDIFLDKIEITPEYVDEKLASIAGDQDLSQYIL 462


>gi|239631509|ref|ZP_04674540.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525974|gb|EEQ64975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 470

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 7   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 67  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 240

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VS
Sbjct: 241 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 300

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 301 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 360

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGAR
Sbjct: 361 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 420

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+    V +  +YV   IG   ++++M  +IL
Sbjct: 421 RLATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 470


>gi|293556770|ref|ZP_06675333.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1039]
 gi|291601102|gb|EFF31391.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1039]
          Length = 466

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153
            NAE+R++  LV       K +T+              NT              R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           +L+ G +  +E+ IEV +        +  G   +GI +L+E    +     KKK+   ++
Sbjct: 187 QLQKGLLDSREVTIEVEEQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGV
Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L  
Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T
Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|301066451|ref|YP_003788474.1| ATP-dependent protease HslVU ATPase subunit [Lactobacillus casei
           str. Zhang]
 gi|300438858|gb|ADK18624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           casei str. Zhang]
          Length = 469

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VS
Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGAR
Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+    V +  +YV   IG   ++++M  +IL
Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|227535111|ref|ZP_03965160.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187252|gb|EEI67319.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 470

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 7   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEINPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 67  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 240

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VS
Sbjct: 241 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 300

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 301 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 360

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGAR
Sbjct: 361 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 420

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 421 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 470


>gi|330836612|ref|YP_004411253.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           coccoides DSM 17374]
 gi|329748515|gb|AEC01871.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           coccoides DSM 17374]
          Length = 468

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/465 (42%), Positives = 300/465 (64%), Gaps = 39/465 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P  IVSELD+YIIGQ DAK+ +A+A+R+R RR++LP  LRDE+ P+NI+++GPTGVG
Sbjct: 10  DMTPAMIVSELDKYIIGQTDAKKTIAVAIRSRSRRKKLPEALRDEIAPRNIIMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR++RLA APF+KVE TKFTEIGYVGR+VE ++RDL+ +A+ +V +   D+  + 
Sbjct: 70  KTEIARRISRLANAPFVKVEATKFTEIGYVGRDVESMVRDLMGIAVQMVHKELGDQQEDM 129

Query: 126 ASINAEERILDALV-------------GK-------------TATSNTREVFRKKLRDGE 159
                E+R+LD L+             GK             ++  + RE  R +LR G 
Sbjct: 130 VRQRVEDRLLDLLIPAAHQEPMTVFRDGKPVPMDSVRIPQSGSSDQSLREQIRAQLRAGS 189

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASV-----GILNLSELFSKVMGSGRKKKIRMSVQK 214
           + +  +D  V+     +   D+ G  ++      + +L  +F+    + +K    +SV++
Sbjct: 190 LDETVVDFSVSPKKPTV-GIDMMGMGNMEDLQQAMNSLGSIFNNRSATHKK----LSVKR 244

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQ 272
               L  +E ++++D D V   + +  E  GI+F+DE DK VA ++G G G  VSREGVQ
Sbjct: 245 AREILTEEELEKIVDQDKVVEIAKERTEQMGIIFIDEIDK-VAGNAGKGSGPDVSREGVQ 303

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+ VSTK+G I+T HILFIA+GAFHVS+P+DL+PE+QGRFP+R  L  L   
Sbjct: 304 RDLLPIVEGTKVSTKWGVIDTTHILFIAAGAFHVSKPSDLIPELQGRFPLRTELSDLTAD 363

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY  +++TEG+ + F++D++  ++ +A  +NST  +IGARRL TV
Sbjct: 364 DFYRILQEPENAIIKQYCAMLETEGVKVVFSDDALRRISVLAYEVNSTSENIGARRLYTV 423

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LE++SF+ASDL  +T+ I   YV   +G      D+  +IL
Sbjct: 424 MEKLLEEVSFTASDLSGQTIPITPAYVDERLGKIIQNPDLSRYIL 468


>gi|317180292|dbj|BAJ58078.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F32]
          Length = 443

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDNREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D +T+
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGETI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|34557656|ref|NP_907471.1| ATP-dependent protease ATP-binding subunit HslU [Wolinella
           succinogenes DSM 1740]
 gi|34483373|emb|CAE10371.1| CLPY PROTEIN [Wolinella succinogenes]
          Length = 440

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/444 (44%), Positives = 304/444 (68%), Gaps = 17/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV+ LD YIIGQ++AK+ VAIALRNR+RR +L  ++++E++PKNIL++G TGVGK
Sbjct: 1   MTPKEIVAYLDEYIIGQKEAKKRVAIALRNRYRRMKLSKEMQEEVIPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+AR+ G PFIKVE +K+TE+G+VGR+VE ++RDLV  AI +V+E  +++ +E  
Sbjct: 61  TEIARRMARMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVGAAIALVKEEHKEKNQEGI 120

Query: 127 SINAEERILDALVG---KTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                E+I+  L+    K A+        ++ E  ++++ +GE+   +I+I+    S D 
Sbjct: 121 DAYVIEKIVQKLIPPLPKGASEAKMQEYESSYERMKQRVINGEVDHLKIEIQPPKKSVDF 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDE-SDRLIDMDTVH 234
           S  ++P      I+ + E  +K   + +K++++  V  K   EL++ E S+ L+DM+T+ 
Sbjct: 181 SEGNVPPE----IVRIQESLAKAFLNSQKEEMKKEVTVKEAKELLKIEASEALLDMETIK 236

Query: 235 RDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + ++  E  GI+F+DE DKI V++ S +    S+EGVQRDLLP+VEGS+VSTK+G I T
Sbjct: 237 AEGLRRAEEEGIIFIDEMDKIAVSQGSSSRQDPSKEGVQRDLLPIVEGSTVSTKHGQIKT 296

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           D+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT T+++++ QY  L+
Sbjct: 297 DYILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEETLYKILTQTKNSILKQYIALL 356

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEG+ L F +++I ALA ++   N    DIGARRL TV+E+VLE+ISF A + Q + VV
Sbjct: 357 ETEGVELVFEDEAIRALAKLSQRANEKTEDIGARRLHTVIEKVLEEISFEAEEHQGEKVV 416

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I  E V   + D     D+  +IL
Sbjct: 417 ITKERVHERLDDLVENVDVARYIL 440


>gi|332686604|ref|YP_004456378.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus
           plutonius ATCC 35311]
 gi|332370613|dbj|BAK21569.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus
           plutonius ATCC 35311]
          Length = 469

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/468 (41%), Positives = 295/468 (63%), Gaps = 38/468 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD Y++GQ  AK++VA+ALRNR+RR QL   ++ E+ PKNIL++GPTGV
Sbjct: 5   LNKTPKEIVKELDEYVVGQTAAKKSVAVALRNRYRRLQLEESMQQEITPKNILMIGPTGV 64

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 65  GKTEIARRLAKIVCAPFVKIEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYS 124

Query: 125 QASINAEERILDALVG-----KTATSNTR--------------------------EVFRK 153
           QA   A +R+   LV      K  +SN +                          +V RK
Sbjct: 125 QALKKANQRLAKILVPGIKKEKKQSSNNQLEQMMQMFNTSMQQPVEEVEEVTEDIKVSRK 184

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G +  +E+ I++ +    +   +  G   +GI +L+E    +    + ++I 
Sbjct: 185 TVLDQLEKGLLGSREVTIKIDEPKKTMPAMN-NGLEQMGI-DLNETLGSLTPKKKIERI- 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L+++E  +L+    +H ++I++ E+ GI+F+DE DKI +++  N   VSRE
Sbjct: 242 VTVKEAQELLVKEELAKLVKEADIHSEAIRLAESSGIIFIDEMDKITSKNQQNTGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS V+TKYG+I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L
Sbjct: 302 GVQRDILPIVEGSQVNTKYGTIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
              DF  ILT+  + LI QY  L+ TE + + FT+++I  +A++A  +N    +IGARRL
Sbjct: 362 TAEDFVRILTEPNNALIKQYMALVGTENVNITFTQEAITRIAEIAFRVNRDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++ER+LED+ F + D+Q   + I   YV   + D     D+  +IL
Sbjct: 422 HTILERLLEDLLFESPDMQMGDITITEAYVDEKLIDIAQNEDLSRYIL 469


>gi|255089867|ref|XP_002506855.1| predicted protein [Micromonas sp. RCC299]
 gi|226522128|gb|ACO68113.1| predicted protein [Micromonas sp. RCC299]
          Length = 500

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/452 (43%), Positives = 292/452 (64%), Gaps = 24/452 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P + V  LDR+I+GQ DAKRA A+ALRNRWRR ++   LRDE++PKNIL++GPTG
Sbjct: 55  TDGLTPSKTVELLDRFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT I+RRLA++  +PF+KVE TKFTE+G+ GR+V+QII+DLVD A++I +   R    
Sbjct: 115 CGKTEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAMHITKTKLRQRFE 174

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-------DIEVADTSSDI 176
           ++ +   E +I+D + G+T+   TR+ F +  RDG +  + I         E        
Sbjct: 175 KEVNEVVENKIVDFMCGETSGDVTRDAFLQMYRDGALDHRVIELELPEGGGEGKGMELGG 234

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN   P    +    L    +++       K RM+V++C P +   E +RLI+ D V ++
Sbjct: 235 SNQMTPERKLIPGGRLGGRGARMT------KKRMTVRECRPLIEEMEYERLINSDVVVKE 288

Query: 237 SIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +++ VEN GIVFLDE DKIV + D  +G   S EGVQRDLLP++EGS V+TK+G++NTD 
Sbjct: 289 ALKAVENDGIVFLDEIDKIVSSSDHRHGADASSEGVQRDLLPIIEGSVVATKHGNVNTDQ 348

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH  +P+D+L E+QGR P++V LK L   D   ILT+ E+N++ Q + L++T
Sbjct: 349 ILFIASGAFHQCKPSDMLAELQGRLPIKVELKGLTADDLLRILTEPEANVLKQQRALLET 408

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--------- 406
           EG+ L FT++++  +A+++  +N TV +IGARRL TV+E+++E++SF A +         
Sbjct: 409 EGVELSFTDEAVRHIANLSAEVNRTVDNIGARRLHTVLEKIVEEVSFHAPEKVATYRETG 468

Query: 407 -LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +    +VID   V   IG+   +TD+  F+L
Sbjct: 469 GIGPLKIVIDVPEVDGAIGELMQKTDLSRFVL 500


>gi|317010764|gb|ADU84511.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SouthAfrica7]
          Length = 443

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+ ++EI+IEV     
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRK--- 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
              N +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 181 --KNIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|297566080|ref|YP_003685052.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus
           DSM 9946]
 gi|296850529|gb|ADH63544.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus
           DSM 9946]
          Length = 418

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/435 (47%), Positives = 295/435 (67%), Gaps = 19/435 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD++IIGQ+ AK+AVA+ALRNR+RR++LPA L  E++P+NIL++GPTGV
Sbjct: 1   MNLTPAEIVRELDKHIIGQESAKKAVAVALRNRYRRKRLPAALAREIVPRNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V +  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEASYQMVLQELKAKVAE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AEE+ L AL+  +A           +R G   D+ ++IEV D  S +    + GG
Sbjct: 121 RATAQAEEQ-LSALLRVSAFD---------IRSGRFDDQLVEIEV-DEESQLPFMGVLGG 169

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +  L  +   ++   R+ + RM V++    L   E++RL+D +   ++ ++  +  
Sbjct: 170 GD-QMQGLGNMLKGLLPQ-RRVRRRMRVKEALEVLKNQEAERLVDKEEATQEGLRRAQED 227

Query: 245 GIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           GIVF+DE DK VAR  G+  G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+G
Sbjct: 228 GIVFIDEIDK-VARKQGSVGGPDVSGEGVQRDLLPVVEGTVVSTRLGPVSTEHVLFIAAG 286

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DL+PE+QGRFP+RV L SL   +F  ILT+ ES+L+ QY EL+K +G  + F
Sbjct: 287 AFHVSKPSDLIPELQGRFPIRVELSSLGAEEFERILTEPESSLLKQYTELLKADGTEIHF 346

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T +++ A+A  A   N  + DIGARRL TV+ERVLE++SF  +DL +  V I  EYV   
Sbjct: 347 TPEAVRAIAQYAHAANRDLEDIGARRLSTVLERVLEEVSFQ-TDLGK--VEITKEYVEAR 403

Query: 423 IGDFPSETDMYHFIL 437
           +    +  D+  +IL
Sbjct: 404 LASVVASPDLSRYIL 418


>gi|282856241|ref|ZP_06265524.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter
           piscolens W5455]
 gi|282586000|gb|EFB91285.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter
           piscolens W5455]
          Length = 471

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 205/465 (44%), Positives = 305/465 (65%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P  IV  LDRYIIGQ+ AKRAVA+ALRNR RR++LP DL  E+ PKNIL+VGPTGVG
Sbjct: 9   NLVPSAIVQYLDRYIIGQEKAKRAVAVALRNRLRRRKLPEDLAQEIAPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V++     V+  
Sbjct: 69  KTEIARRLADLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAMQMVKKRMIAGVQSV 128

Query: 126 ASINAEERILDAL--VGKTATS-------------------------------NTREVFR 152
           A  +A+ER++D L  V K++++                               +TRE   
Sbjct: 129 AFEHAQERLVDYLLPVRKSSSAAGIPTFLNYLKKEQAEQPEDAAPEESPAVRQSTRERML 188

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L+ G++ ++E++I+V ++SS I++F       +GI N+SE+   +M    KK+ RM V
Sbjct: 189 NMLKGGKLDEREVEIDVQESSSPIASFGNGEMGGIGI-NISEMLGGMMPKKSKKR-RMKV 246

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L  +E+++LID++   ++++   +  GI+F+DE DKIV+R  G G  VSREGVQ
Sbjct: 247 KDALRVLQAEEAEKLIDIEAATQEALDKAQQEGIIFIDEIDKIVSRGRGGGPDVSREGVQ 306

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG SV+TKYG + TDHI FIA+GAFH ++P+DL+PE+QGR P+RV L +L K 
Sbjct: 307 RDLLPIVEGCSVTTKYGQVKTDHIFFIAAGAFHDAKPSDLVPELQGRLPIRVELTALGKE 366

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           + R IL +   +LI Q   L++TEG+ L FT+++++ +A +A  +N  + +IGARRL T+
Sbjct: 367 ELRRILIEPRHSLIHQSVALIETEGLELRFTDEAVEEIAAMAERMNLEMENIGARRLHTI 426

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE+ISFSA +   + + ID  +V   +     + D+  ++L
Sbjct: 427 LEQLLEEISFSAPERTGEAIEIDKSFVVKKLEPLVGDKDLRRYLL 471


>gi|83282486|ref|XP_729791.1| heat shock protein ATPase subunit HslU [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23488601|gb|EAA21356.1| heat shock protein HslVU, ATPase subunit HslU, putative [Plasmodium
           yoelii yoelii]
          Length = 761

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 188/439 (42%), Positives = 291/439 (66%), Gaps = 10/439 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GPTGVGKT 
Sbjct: 323 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGKTE 382

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +    +E++EQA  
Sbjct: 383 IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKKQKSKMENEIKEQAEE 442

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD----TSSDISNFDIPGG 184
             +  IL +L+G +     +E+++K L++G + DK I+I++       ++  +N  +   
Sbjct: 443 TVDNIILYSLLGNSVKCEEKEIWKKYLKEGLLDDKIINIDIPSYINNNNNIFTNDSVENA 502

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  I+ D + + +I  
Sbjct: 503 VKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDVILKTAINS 562

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 563 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 622

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+QGR PV V+L SL+  DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 623 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGI 682

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D+I+++A+ A ++N  + +IG RRL T++E+++E+I++       K++VID E 
Sbjct: 683 DLHFTDDAIESIANAAHDMNVYIENIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEV 742

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +  F  + D+  +I+
Sbjct: 743 VKKSLEGFIKQFDLKKYII 761


>gi|15611532|ref|NP_223183.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori J99]
 gi|11133260|sp|Q9ZLW1|HSLU_HELPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|4154993|gb|AAD06034.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 443

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++ +++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKERLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|261838240|gb|ACX98006.1| heat shock protein, ATP-binding subunit [Helicobacter pylori 51]
          Length = 443

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   WNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSMLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D +++
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G+VF+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVVFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|237749804|ref|ZP_04580284.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC
           43879]
 gi|229374554|gb|EEO24945.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC
           43879]
          Length = 445

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/449 (43%), Positives = 293/449 (65%), Gaps = 19/449 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L    +PREIVS LD YIIGQ+DAK+AVAIALRNR+RR QLP +++DE+ PKNIL++G 
Sbjct: 3   ELIITQTPREIVSYLDGYIIGQKDAKKAVAIALRNRYRRLQLPKEMQDEVTPKNILMIGS 62

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RR+A+L G PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++N+++  ++++
Sbjct: 63  TGVGKTEIARRMAKLMGLPFVKVEASKYTEVGFVGRDVESMVRDLVNASVNLLQNKQKED 122

Query: 122 VREQASINAEERILDALVGKTATSNTR----------EVFRKKLRDGEISDKEIDIEVAD 171
             ++       RI   L+       T           E  +++++ G + D +I IE+A 
Sbjct: 123 SADKIDDYILNRITQKLLPPLPAGVTEQKKQEYDISFEKMKERVKSGAMDDTKIMIEIAK 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDES-DRLID 229
               I   ++P      I+ + E   K +   G K K  +++++   EL+R E+ + ++D
Sbjct: 183 QEEKIDE-NLPAE----IIKVQESLIKALNMKGDKIKKEITIKEA-KELLRPEAQNAVLD 236

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            D +  D++++ E  GI+F+DE DKI VA    +    S+EGVQRDLLP+VEGS V T+Y
Sbjct: 237 SDMIKTDALKLAEQSGIIFIDEIDKIAVASKDSSKQDPSKEGVQRDLLPIVEGSVVQTRY 296

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L++     ILT T++++I Q
Sbjct: 297 GQIKTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELQVLDEEALYQILTQTKNSIIRQ 356

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+  EGI L F + ++ AL+ ++ + N    DIGARRL T +ERVLEDISF A D +
Sbjct: 357 YEALLSVEGITLKFEDSALRALSRLSFHANEKTEDIGARRLHTTIERVLEDISFCAEDYK 416

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + VVI    V   + D     D+  +IL
Sbjct: 417 GQEVVITESIVEEKLKDLVENVDLARYIL 445


>gi|116494891|ref|YP_806625.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           casei ATCC 334]
 gi|116105041|gb|ABJ70183.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           casei ATCC 334]
          Length = 469

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+I   EN GI+F+DE DKI A +  N   VS
Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIPSAENNGIIFIDEIDKIAAGNKHNSGEVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGAR
Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|15645143|ref|NP_207313.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori 26695]
 gi|11132784|sp|O25254|HSLU_HELPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|2313631|gb|AAD07584.1| heat shock protein (hslU) ORF1 [Helicobacter pylori 26695]
          Length = 443

 Score =  365 bits (937), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|208434438|ref|YP_002266104.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27]
 gi|238065799|sp|B5Z6N9|HSLU_HELPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|208432367|gb|ACI27238.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27]
          Length = 443

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 298/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|149194254|ref|ZP_01871351.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135429|gb|EDM23908.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 437

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 193/446 (43%), Positives = 294/446 (65%), Gaps = 22/446 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y++GQ+DAK+ +AIALRNR+RR QLP + +D+++PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVKYLDEYVVGQRDAKKTIAIALRNRYRRMQLPKEWQDDILPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE +IRDLV+ + N+VR    +  + 
Sbjct: 61  GKTEIARRMAKMMKVPFVKVEASKYTEVGFVGRDVESMIRDLVNNSYNLVRAEMEERSKS 120

Query: 125 QASINAEE---RILDALVGKTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           Q          R L   + K A          T E  ++K++ GE+   +I IEV +T+ 
Sbjct: 121 QIEEEIINEITRKLIPPLPKNAPEEKLKDYEKTFEKMKEKVKKGEVDHLKITIEVDETNQ 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              N          ++   E   K++G  +  K+K  ++V++    L +  +++ I+ D 
Sbjct: 181 LDDNL------PPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKQAAEKFINKDE 234

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           + +++++  EN GI+F+DE DKI A  +GN     S+EGVQRDLLP+VEGS+V+TKYG +
Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA--TGNTRQDPSKEGVQRDLLPIVEGSTVNTKYGYV 291

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT  + +LI QY++
Sbjct: 292 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQK 351

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ EG+ L F E ++  +A  A   N    DIGARRL TV+E+VLEDI+F+A + ++K 
Sbjct: 352 LLEVEGVNLVFEESALKEIAKYAFLANEKTEDIGARRLHTVVEKVLEDINFNAEEYKDKD 411

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
            +ID  YV+  + D     ++  +IL
Sbjct: 412 FIIDEGYVKSKLEDIVENEEISKYIL 437


>gi|160903347|ref|YP_001568928.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95]
 gi|189043914|sp|A9BID3|HSLU_PETMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|160360991|gb|ABX32605.1| heat shock protein HslVU, ATPase subunit HslU [Petrotoga mobilis
           SJ95]
          Length = 469

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/465 (44%), Positives = 305/465 (65%), Gaps = 36/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+++V +LD YIIGQ++AK+ VAIALRNR RR  L  D+R +++PKNIL++G TGVGK
Sbjct: 7   LTPKKVVEKLDNYIIGQKEAKKQVAIALRNRIRRLSLSEDVRKDVIPKNILMIGSTGVGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA +A APF+KVE T+FTE+GYVG+NVE ++R+LVD ++N+V++   +EV+++A
Sbjct: 67  TEIARRLAEVANAPFVKVEATRFTEVGYVGKNVESMVRELVDSSVNMVKKEMMEEVKDKA 126

Query: 127 SINAEERILDALVGKTATSNT----------------------------------REVFR 152
               EERI++ LV     +                                    RE   
Sbjct: 127 QRLVEERIVEVLVPSKKRAKAQPSFMDVMQLFNQNAEYSQNKDYDENEDENIRRRREELL 186

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR+GE+ D EI++EV + SS +     P    +GI    E+F  +M   +KK+ RM +
Sbjct: 187 EKLRNGELEDVEIEVEVEEQSSPMFAGLGPELEDMGI-QFGEMFQNLM-PKKKKRRRMKI 244

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L   ES++LID D + ++ +   EN GI+F+DE DKI ++   +G  VSREGVQ
Sbjct: 245 SEARKVLEPIESEKLIDQDKLIQEGVSRAENSGIIFIDEIDKITSKGVSSGPDVSREGVQ 304

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG++V TKYGSI+TD+ILFIA+GAF  ++P+DL+PE+QGRFP+R  L  L K 
Sbjct: 305 RDLLPIVEGTTVMTKYGSISTDYILFIAAGAFSEAKPSDLIPELQGRFPIRAELSDLTKE 364

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT  ++ ++ QY+ L++T+G+ ++FTED ++ +AD+A  LN  V +IGARRL TV
Sbjct: 365 DFIRILTQPKNAILKQYQYLLQTDGVKIEFTEDGVERMADIAFELNEKVENIGARRLYTV 424

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E+VLE++SF A    E  + ID+ YV L +G    + D+  +IL
Sbjct: 425 VEKVLEEVSFEAPASGEWELKIDSNYVDLRLGKVYGDEDLREYIL 469


>gi|317181836|dbj|BAJ59620.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F57]
          Length = 443

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +T+
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSETI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|199599530|ref|ZP_03212918.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|199589571|gb|EDY97689.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
          Length = 469

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMTAGDDADAGGEVTDDIRNRRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D+EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALM---PKKKVE 239

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D      VS
Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +IGAR
Sbjct: 360 DLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|154149128|ref|YP_001406619.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153805137|gb|ABS52144.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           hominis ATCC BAA-381]
          Length = 439

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/442 (45%), Positives = 302/442 (68%), Gaps = 17/442 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ++AK+ +AIALRNRWRR +L  ++R+E+MPKNIL++G TGVGKT
Sbjct: 3   TPKKIVEILDDYIIGQKNAKKTIAIALRNRWRRLKLDEEMRNEVMPKNILMIGSTGVGKT 62

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRL+++ G PF+KVE +K+TE+G+VGR+VE ++RDL   ++N+V+    ++ RE+  
Sbjct: 63  EIARRLSKMFGLPFVKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKNEELEKNREKID 122

Query: 128 INAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              E+RIL  ++             A + + E  R+K R+G I D  I+IE+ ++S + S
Sbjct: 123 EYIEKRILQKVLPPLPRGASDEKVEAYNKSYEKMREKFRNGLIDDLIIEIEIDESSLE-S 181

Query: 178 NFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           N ++P   +    N+ E F KV+G S +K K  + ++     L  + SD++++ D +  +
Sbjct: 182 NPNLPPEMA----NMQESFIKVIGISTKKTKKELKIKDAKVALKNEASDKVLNKDRIKAE 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+  EN GI+F+DE DKI      +G    S+EGVQRDLLP+VEGSSV+TKYG+INTDH
Sbjct: 238 AIRRAENEGIIFIDEIDKIAVSSGNSGRNDPSKEGVQRDLLPIVEGSSVNTKYGNINTDH 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++LI QY  L+ T
Sbjct: 298 ILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYEILTKPKNSLIKQYMALLAT 357

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F+ED I ++A  A   N  + DIGARRLQT+ME+VLED+SFSA +     V ID
Sbjct: 358 EGLKLKFSEDGIKSIAKFAALANEKMEDIGARRLQTIMEKVLEDLSFSADEHAGTDVKID 417

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            + V   + +   + D+  +IL
Sbjct: 418 EKTVAQKLENIVLDEDLAKYIL 439


>gi|116492725|ref|YP_804460.1| ATP-dependent protease ATP-binding subunit HslU [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102875|gb|ABJ68018.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pediococcus
           pentosaceus ATCC 25745]
          Length = 470

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/473 (42%), Positives = 297/473 (62%), Gaps = 41/473 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           + +N +P+EIV ELD+++IGQ+ AKRAVA+ALRNR+RR QL  D+++++ PKN+L++GPT
Sbjct: 1   MQYNLTPQEIVQELDQFVIGQKSAKRAVAVALRNRYRRLQLSGDMQEDITPKNLLMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A++I  E+   +V
Sbjct: 61  GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHIEEENSFKDV 120

Query: 123 REQASINAEERILDALVG-KTATSNTREV--------FRKKLRDGEISD----------- 162
           R +AS NA+ RI++ LV   T T N               +L+ G   D           
Sbjct: 121 RAEASKNADRRIVELLVPVSTDTQNKNNAADIQNMMNMLNQLQQGRTPDNLNQSSQKVPD 180

Query: 163 --KEIDIEVADT------SSDISNFDI--PGGASVGIL------NLSELFSKVMGSGRKK 206
             KE  + VA         +D+   ++  P   + G +      +L E  + +M    KK
Sbjct: 181 DIKEKRMNVASKLAKGLLENDMVTIEMDDPKQNNSGNMMNQMGIDLGESLNGLMP---KK 237

Query: 207 KIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           KI   ++V++    L+R+ESD+L++   ++  +IQ  EN GI+F+DE DKI      +  
Sbjct: 238 KITRTVAVREAREILIREESDKLVNHGDLYHAAIQRAENTGIIFIDEIDKITGSGQNSSS 297

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSR+GVQRD+LP+VEGS VSTKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP+RV
Sbjct: 298 DVSRQGVQRDILPIVEGSQVSTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFPIRV 357

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L  L K DF  ILT+ ++ L+ QY  L+ T+ + + FT ++I+ +A +A  +N    +I
Sbjct: 358 ELNDLTKEDFVKILTEPKNALVKQYIALIGTDNVKITFTIEAIERIAAIAEQVNHETENI 417

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL T++E +LEDI F    ++   V I  +YV   IG      D+  FIL
Sbjct: 418 GARRLHTILEHLLEDILFEGPSMEMGEVTITEKYVDDKIGSIAQNKDLSEFIL 470


>gi|258508411|ref|YP_003171162.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           rhamnosus GG]
 gi|258539624|ref|YP_003174123.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           rhamnosus Lc 705]
 gi|257148338|emb|CAR87311.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Lactobacillus rhamnosus GG]
 gi|257151300|emb|CAR90272.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Lactobacillus rhamnosus Lc 705]
 gi|259649725|dbj|BAI41887.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           GG]
          Length = 469

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149
             A +R++  LV                        GK                  N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNRRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D+EI + V D        D+ G   +GI +LS+    +M    KKK+ 
Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALMP---KKKVE 239

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D      VS
Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK
Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +IGAR
Sbjct: 360 DLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|302846515|ref|XP_002954794.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f.
           nagariensis]
 gi|300259977|gb|EFJ44200.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f.
           nagariensis]
          Length = 581

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/470 (44%), Positives = 299/470 (63%), Gaps = 38/470 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGV 64
             +P  IV+ LD+YI+GQ  AKRA+A+ALRNRWRRQ++ PA  RDE+MPKNIL+VGPTG 
Sbjct: 91  GLTPAAIVAALDKYIVGQAAAKRALAVALRNRWRRQRVEPATFRDEIMPKNILMVGPTGC 150

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++RRLA+LA APF+K E TK+TE+GYVGR+VE+II+DLV+ A+ +VR+  +D + E
Sbjct: 151 GKTEVARRLAKLADAPFVKGEATKYTELGYVGRDVEEIIKDLVEAALVLVRQRAKDRLAE 210

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-----------DTS 173
            +S  AE  IL ALVG+ A+S+T  +FR+  + GE+ D  ++I+ A             S
Sbjct: 211 HSSRRAEAIILRALVGQHASSDTLGMFREMYKRGELDDTHVEIDSALLDGSGSSGAGGGS 270

Query: 174 SDISNFDI-PGGASV--GILNLSELFSKVM--GSGRKKKIRM---------SVQKCYPEL 219
                 D  PGG S    +      F + +  G+G +  +R+          V +    L
Sbjct: 271 GFGGQLDFGPGGVSCWKAVCATGPGFWRPLPGGAGGRLGVRLLFPSYLALCQVSEARSLL 330

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLL 276
              ES++L+  D V R++I+  E  GIVF+DE DKIV   SG    G GVS EGVQRDLL
Sbjct: 331 EEAESEKLLSSDQVTREAIRAAEQDGIVFIDEIDKIVDPSSGRVVTGGGVSSEGVQRDLL 390

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L E+QGR P+RV LK L   DF  
Sbjct: 391 PIIEGSVVPTKHGNVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRVELKGLTAEDFYR 450

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++N++ Q +EL+ TE + L FT+ +I A++ +A   N  + +IGARRL TV+ERV
Sbjct: 451 ILTEPQNNMLRQQQELLATEAVQLVFTDGAIRAISTLAEQANRLLDNIGARRLHTVLERV 510

Query: 397 LEDISFSASD---------LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L DISF A +          Q    V+D + V   + D   + D+  ++L
Sbjct: 511 LADISFGAPERVAEARREGRQTYEYVVDEQLVHRKLDDLLKKQDLSRYVL 560


>gi|210134717|ref|YP_002301156.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori P12]
 gi|238065798|sp|B6JL98|HSLU_HELP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|210132685|gb|ACJ07676.1| heat shock protein ATP-binding subunit [Helicobacter pylori P12]
          Length = 443

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|325115573|emb|CBZ51128.1| putative ATP-dependent heat shock protein [Neospora caninum
           Liverpool]
          Length = 527

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/459 (43%), Positives = 292/459 (63%), Gaps = 38/459 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVG 65
             P+E+V  L++YIIGQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+GPTGVG
Sbjct: 79  LCPQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVG 138

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R  
Sbjct: 139 KTEVARRLAKRIDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEAMRPA 198

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE----------------- 168
           A   AE +IL+AL+GK      ++  R  LR G +  + + ++                 
Sbjct: 199 AEHRAETKILEALLGKMPAEEHQQWLRH-LRCGALDSRRVHVDFPARPNVGAASGGPAFD 257

Query: 169 -------VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
                  VAD  S I + D P  A          F+   G    +   ++V++   +LM+
Sbjct: 258 DGGRDSIVADLESIIRDIDRPRPA---------FFATRRGPRGSEARNLTVKEAREKLMQ 308

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLV 279
            E D +I  D V + +++ VE  GIVF+DE DKI ++   SG     S EGVQRDLLPL+
Sbjct: 309 AELDAMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGVQRDLLPLI 368

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG++VST+YG + TD+ILFIASGAFH  RP++LL E+QGR P+RV L SL +SD R ILT
Sbjct: 369 EGTTVSTRYGDVKTDYILFIASGAFHCVRPSELLAELQGRLPIRVTLTSLTESDLRDILT 428

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T++NLI Q   L++TE + L FTE++++ +A VA  +N++V +IGARRL T++E+++ED
Sbjct: 429 KTQNNLIEQNTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHTIIEKIMED 488

Query: 400 ISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           I+++A  +   T V ID E VR  +    ++ D   F+L
Sbjct: 489 INYAAPSMAPGTRVEIDLERVRSSVSSLLTKMDYTRFVL 527


>gi|308184323|ref|YP_003928456.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SJM180]
 gi|308060243|gb|ADO02139.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SJM180]
          Length = 443

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|317013933|gb|ADU81369.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Gambia94/24]
          Length = 443

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|317179117|dbj|BAJ56905.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F30]
          Length = 443

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP++EGS V+TKYGSI 
Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIIEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|307637194|gb|ADN79644.1| ATP-dependent hsl protease [Helicobacter pylori 908]
 gi|325995783|gb|ADZ51188.1| ATP-dependent hsl protease ATP-binding subunit [Helicobacter pylori
           2018]
 gi|325997379|gb|ADZ49587.1| ATP-dependent protease ATP binding subunit [Helicobacter pylori
           2017]
          Length = 443

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKYLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQCI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|109947437|ref|YP_664665.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           acinonychis str. Sheeba]
 gi|123066225|sp|Q17XG0|HSLU_HELAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109714658|emb|CAJ99666.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter
           acinonychis str. Sheeba]
          Length = 443

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVTYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLRMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI ++   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAISPKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEVAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|298736227|ref|YP_003728753.1| heat shock protein HslU [Helicobacter pylori B8]
 gi|298355417|emb|CBI66289.1| Heat shock protein HslU [Helicobacter pylori B8]
          Length = 443

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|261839652|gb|ACX99417.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
          Length = 440

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+ +AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 1   MNMTPREIVAYLDEYIIGQKEAKKFIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 61  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 121 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 181 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 236 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 296 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEKIMYMILTQTKTSIIKQYQAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 356 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 416 TITKELVQSKLEDLVADENLVKYIL 440


>gi|224373289|ref|YP_002607661.1| ATP-dependent protease ATP-binding subunit HslU [Nautilia
           profundicola AmH]
 gi|223588434|gb|ACM92170.1| heat shock protein HslVU, ATPase subunit HslU [Nautilia
           profundicola AmH]
          Length = 437

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 192/446 (43%), Positives = 295/446 (66%), Gaps = 22/446 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YI+GQ+DAK+ +AIALRNR RR QLP + +D++MPKNIL++GPTGV
Sbjct: 1   MSMTPKQIVAYLDEYIVGQKDAKKTIAIALRNRHRRMQLPKEWQDDIMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE +IRDLV+ ++N+VR    +  +E
Sbjct: 61  GKTEIARRMAKMMKLPFVKVEASKYTEVGFVGRDVESMIRDLVNNSMNLVRAEMEENSKE 120

Query: 125 QASINAEERILDALVG---KTATSNTR-------EVFRKKLRDGEISDKEIDIEVADTSS 174
           Q   N  E I   L+    K A    +       E  +++++ GE+   +I IE+ +   
Sbjct: 121 QIEENVIEEITKKLLPPLPKNAPEQKQIEYQHSFEKMKERVKKGEVDHLKITIEIEELPE 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              N          ++   E   K++G  +  K+K  ++V++    L ++ ++++I  + 
Sbjct: 181 GDDNL------PPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKEAAEKVISKED 234

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           + +++++  EN GI+F+DE DKI A  +GN     S+EGVQRDLLP+VEGS+V+TKYG +
Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA--TGNQRQDPSKEGVQRDLLPIVEGSTVNTKYGYV 291

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT  + +LI QY++
Sbjct: 292 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQK 351

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ E + L FTE+++  +A  A   N    DIGARRL TV+E+VLEDI+F A +   K 
Sbjct: 352 LLEVEQVNLIFTEEALREIARYAFLANEKTEDIGARRLHTVIEKVLEDINFEADEYAGKD 411

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
            VID  YV+  + D     ++  +IL
Sbjct: 412 FVIDEAYVKSKLDDIVESEEITKYIL 437


>gi|313884956|ref|ZP_07818708.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619647|gb|EFR31084.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 466

 Score =  362 bits (929), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/470 (42%), Positives = 302/470 (64%), Gaps = 46/470 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR +VSELD+YIIGQ  AKR+VA+ALRNR RR +L  ++R E+ PKNIL++GPTGVGK
Sbjct: 4   LTPRYVVSELDKYIIGQDQAKRSVAVALRNRLRRLRLDDEMRQEVKPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA +A APF+KVE TK+TE+GYVGR+VE ++RDLV+ AI I+++   ++V++QA
Sbjct: 64  TEIARRLASIAQAPFVKVEATKYTEVGYVGRDVESMVRDLVENAIRIIKDQEFEKVQDQA 123

Query: 127 SINAEERILDAL-----VGKTATSN--------------------------------TRE 149
              A ERI  AL     V K    N                                +R 
Sbjct: 124 ENLAIERIAKALRPGKKVEKKTNQNGNFDFMEMMKNFAPVGQEDSEDDEVVTEEIASSRR 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             R ++R+G++ + E+ I++ +    ++N +    A   ++ + E  S +     KKKI 
Sbjct: 184 AIRAQIREGKLDNHEVTIKMQEKKLQMTNLN---PAMEQMMEMQESLSALQP---KKKIE 237

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             ++V++    L  +E+++L++MD +H+ ++ + ++ GI+F+DE DKI  ++  +G  VS
Sbjct: 238 RTVTVKEAIKLLSEEEAEKLVNMDNIHQKALSLAQDSGIIFIDEMDKIATKNQNSG-EVS 296

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRD+LP+VEG+ + TKYG I+TDHILF+ SGAFH+++P+DL+PE+QGRFP+RV+L 
Sbjct: 297 RQGVQRDILPIVEGTQIQTKYGIISTDHILFVGSGAFHLAKPSDLIPELQGRFPIRVNLD 356

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L+  DF  IL   ++ LI QY+ ++ TEG+ + FT+D+I+ +A  AV LN T  +IGAR
Sbjct: 357 DLSHDDFVKILVQPKNALIKQYQAMLATEGVQIHFTDDAIEKMAYYAVELNETTDNIGAR 416

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E VLE++ F A+D     + I A YV   +       D+ H+IL
Sbjct: 417 RLHTIIETVLEELLFEAADTPMGEIEITANYVSERLEKITENKDLSHYIL 466


>gi|317177646|dbj|BAJ55435.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F16]
          Length = 443

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V    G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVNSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|319892269|ref|YP_004149144.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161965|gb|ADV05508.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464634|gb|ADX76787.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 469

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 188/465 (40%), Positives = 300/465 (64%), Gaps = 37/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+P++IV  L+ YI+GQ++AK+ VAIALRNR+RR  L  +++ E+ PKNIL++GPTGVGK
Sbjct: 8   FTPKDIVDRLNEYIVGQEEAKKKVAIALRNRYRRSLLDDEVKQEIAPKNILMMGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPF+KVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V E A
Sbjct: 68  TEIARRMAKIVGAPFLKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKANVVEAA 127

Query: 127 SINAEERILDALV---GKTATSNTREVFRK-------------------------KLRDG 158
           +  A ++++  LV    K A+ NT                               K +  
Sbjct: 128 TQKANDKLVKLLVPSLKKKASQNTNNPLESLFGGAIPNFGQHNEEDEEEPPTEDIKTKRS 187

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP- 217
           EI  + ++ ++ +    +     PG   +   N +E   ++M     KK    V+K  P 
Sbjct: 188 EIRVQLLNGQLEEEKVKVKVEQDPGALGMLGTNQNEQMQEMMNQLMPKK---KVEKELPV 244

Query: 218 ----ELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
               +++ D+ +D +ID +T +++++ + E  GI+F+DE DK+   +  +G  VSR+GVQ
Sbjct: 245 KTARKILVDQFADEMIDHETANQEALDLAEQMGIIFIDEIDKVATSNQNSGQDVSRQGVQ 304

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP++EGS V TKYG+++T+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+ L+  
Sbjct: 305 RDILPILEGSVVKTKYGTVSTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELQDLSVD 364

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + + +LI QY+ L+KTE ++++FT+++I  LA++A ++N    +IGARRL T+
Sbjct: 365 DFVRILKEPKLSLIKQYEMLLKTEEVVVNFTDEAIYRLAEMAYHVNQETDNIGARRLHTI 424

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 425 LEKMLEDLSFEAPNMPHAQVDITPQYVDDKLKTISTNKDLSEFIL 469


>gi|317012332|gb|ADU82940.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Lithuania75]
          Length = 443

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGVRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|108562915|ref|YP_627231.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori HPAG1]
 gi|122980524|sp|Q1CU15|HSLU_HELPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|107836688|gb|ABF84557.1| heat shock protein, ATP-binding subunit [Helicobacter pylori HPAG1]
          Length = 443

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYLGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|320101720|ref|YP_004177311.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida
           ATCC 43644]
 gi|319749002|gb|ADV60762.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida
           ATCC 43644]
          Length = 541

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/494 (41%), Positives = 304/494 (61%), Gaps = 63/494 (12%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV ELDR I+GQ  AKRAVA+ALR+RWRR++LP + R  + PKNIL++GPTGVG
Sbjct: 49  DLTPRRIVEELDRDIVGQDRAKRAVALALRDRWRRRRLPEETRRWITPKNILMIGPTGVG 108

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+KVE TK+TE+GY+GR+VE ++RDLV+ AI++V+E  R  V  Q
Sbjct: 109 KTEIARRLAQLVGAPFVKVEATKYTEVGYIGRDVESMVRDLVEAAISLVKERERKRVASQ 168

Query: 126 ASINAEERILDALVGKTATSN--------------------------------------- 146
           A   AEER++D L+  +A+S+                                       
Sbjct: 169 AQARAEERLIDLLLPGSASSSATGWGGGSPRRPPAAPPFVSPFGFPFGTSAPAASDSDAA 228

Query: 147 --------------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                         +R+  R +LR+G+    E+++ +   ++   +     GA    + L
Sbjct: 229 TDSEDAAARERRQRSRDKLRAQLREGKADHLEVELVLPGRAAPPVSIIGAAGAEQMEMEL 288

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
             +F ++M    + + RM+V +  P L+  E + L+D +T+ R +I++ E  GI+F+DE 
Sbjct: 289 QSMFERMMPRPARPQ-RMTVAEARPILIEREVEALLDPETIQRSAIRLAEESGIIFIDEI 347

Query: 253 DKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           DK+   +   G G    VSR GVQRDLLP+VEG++V+TKYG + TD++LFIA+GAFH +R
Sbjct: 348 DKVAGEEGAGGGGRGPDVSRGGVQRDLLPIVEGTTVTTKYGPVKTDYVLFIAAGAFHKAR 407

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
           P+DL+PE+QGRFP+RV L  L + DF  IL +   +L+ QY+ L+  EG+ L FT D+ID
Sbjct: 408 PSDLMPELQGRFPIRVELDDLTRDDFARILREPRVSLLNQYQALLAVEGVQLQFTPDAID 467

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVIDAEYVRLHI 423
           A+A++A  +N +  +IGARRL T++ERV+E+ISF+A D   +T     V IDA  VR  +
Sbjct: 468 AMAEIAYQVNRSTQNIGARRLHTILERVVEEISFNAPDQVAQTEDPLVVTIDAAEVRRKL 527

Query: 424 GDFPSETDMYHFIL 437
                + D+  FIL
Sbjct: 528 DPLVRDDDLSRFIL 541


>gi|315586803|gb|ADU41184.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter
           pylori 35A]
          Length = 443

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV----RESRRD 120
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    +E  +D
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 121 EVREQASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           ++ E       ++ L  L        K   +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|183179650|ref|ZP_02957861.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3]
 gi|183013061|gb|EDT88361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3]
          Length = 389

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/391 (49%), Positives = 269/391 (68%), Gaps = 13/391 (3%)

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  + 
Sbjct: 1   MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQ 60

Query: 118 RRDEVREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEID 166
             ++V+ +A   AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+
Sbjct: 61  AMEKVKFRAEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIE 120

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I VA     +     PG   +    L  LF  + G   KKK +M ++     L+ +E+ +
Sbjct: 121 INVAVPQMGVEIMAPPGMEEM-TNQLQGLFQNLAGD-TKKKRKMKIKDALKALVEEEAAK 178

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ + +   +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VST
Sbjct: 179 LVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVST 238

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L 
Sbjct: 239 KHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLT 298

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY  LMKTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++
Sbjct: 299 EQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATE 358

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +  VIDA YV+  +G+   + D+  FIL
Sbjct: 359 KAGQAFVIDAAYVKARLGELVEDEDLSRFIL 389


>gi|331701473|ref|YP_004398432.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128816|gb|AEB73369.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           buchneri NRRL B-30929]
          Length = 470

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/470 (41%), Positives = 288/470 (61%), Gaps = 46/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIVS LD+YI+GQ +AK+AVA+ALRNR+RR QL  D++DE+ PKN+L++GPTGVGKT
Sbjct: 7   TPKEIVSVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKDMQDEISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ AI + R  +  +V  +A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGGDVESMVRDLVENAIQLERADQYKQVHVEAE 126

Query: 128 INAEERILDALV------------------------GKTATSNT-------------REV 150
             A  R++  L                         G+  + N              R  
Sbjct: 127 KQANNRLVKLLAPAKKKENRQNEMQNLMNMFTQMQNGQMPSENQDDQEEVTDDIREKRMS 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIR 209
             +KL+ G + + +++IE+ D S        P G S  +  +  +L   + G   KKKI+
Sbjct: 187 IAEKLKAGLLENDQVEIEMDDPSQQ------PAGQSTMMNQMGIDLNDTLAGLMPKKKIK 240

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             + V +    L R  S+ LI+   ++ ++I   EN GI+F+DE DKI    S N   VS
Sbjct: 241 RTVPVSEAREILTRQASEELINKADLYHNAIVRAENTGIIFIDEIDKIAPGKSQNSGEVS 300

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS V+TKYG++NTDH+LFI SGAF  ++P+DL+PE+QGRFP+RV L 
Sbjct: 301 REGVQRDILPIVEGSQVNTKYGTVNTDHMLFIGSGAFAENKPSDLIPELQGRFPIRVELN 360

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A ++N    +IGAR
Sbjct: 361 DLTKEDFVRILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATDVNHNTDNIGAR 420

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 421 RLHTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAQNKDLSRYIL 470


>gi|308061843|gb|ADO03731.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Cuz20]
          Length = 443

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIVFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|322378787|ref|ZP_08053216.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
 gi|322380636|ref|ZP_08054788.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5]
 gi|321146958|gb|EFX41706.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5]
 gi|321148817|gb|EFX43288.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
          Length = 446

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/447 (44%), Positives = 288/447 (64%), Gaps = 21/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD YIIGQQDAK+ +AIALRNRWRR QL  +L++E+MPKNIL++G TGV
Sbjct: 7   LNLTPQEIVRYLDDYIIGQQDAKKMIAIALRNRWRRLQLSKELQEEVMPKNILMIGSTGV 66

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV  +I++V    ++  + 
Sbjct: 67  GKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVVASIHLVENEEKE--KN 124

Query: 125 QASIN--AEERILDAL-------VGKTATSNTREVFRK---KLRDGEISDKEIDIEVADT 172
           QA I     ERI   L       VGK         F K   K+R   + D++I IE+ D 
Sbjct: 125 QAKIEDLIIERITKKLLPPLPSGVGKDKQQEYALNFEKTKQKVRSHVLDDQKIQIEL-DK 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMD 231
                +F++P      I+ + E  +K++  G +K  + M++++    L  D S  ++DM+
Sbjct: 184 RGVEGDFNMPPE----IIKVQESLTKILNKGGEKVSKEMTIKEAKEALRHDVSQAILDME 239

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V R+ +Q     G++F+DE DKI V    G     S+EGVQRDLLP+VEGS++ TKYG 
Sbjct: 240 QVQREGVQRAAQCGVIFIDEIDKIAVGSKEGRTQDPSKEGVQRDLLPIVEGSTIQTKYGP 299

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL++     ILT  +S+LI QY+
Sbjct: 300 IATDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLSEEIMYEILTRPKSSLIKQYQ 359

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L++ E + L F  +++  LA  +   N    DIGARRL T +E+VLEDISF+A+    +
Sbjct: 360 ALLEVENVDLAFEPEALRELARFSYLANQKTEDIGARRLHTTLEKVLEDISFNATAYAGQ 419

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            VV+  + V   + D   + D+  FIL
Sbjct: 420 KVVVSKKDVSQTLQDLVEDVDLARFIL 446


>gi|315924466|ref|ZP_07920688.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622345|gb|EFV02304.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 477

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/464 (44%), Positives = 285/464 (61%), Gaps = 63/464 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR IV EL+RYIIGQ+ AK+AVA++LRNR+RR  LP  +R+E+ PKNI+++GPTGVGK
Sbjct: 8   LTPRMIVDELNRYIIGQEKAKKAVAVSLRNRYRRSLLPDAIREEITPKNIIMMGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L  APFIKVE TKFTE+GYVGR+VE +IRDLV  +I +V++ + D+V+ QA
Sbjct: 68  TEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMIRDLVTTSIRMVKQEKMDDVKTQA 127

Query: 127 SINAEERILDALVGKTATSNTRE------------------------------------- 149
              A   ILDALV +   +  +E                                     
Sbjct: 128 EEKANRIILDALVPRRKKAQKQEKLINPFDLLNQNKSPAAVEDAQPELSPEEKHQIETKR 187

Query: 150 -VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---------NLSELFSKV 199
               ++L DG++ D+ ID+ + D           G  S+GI+          +  +F  +
Sbjct: 188 SAIAEELADGKLEDEMIDVMLDDD----------GAKSIGIMAGMSEDMSIEIGNIFEGL 237

Query: 200 MGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258
            G  +KKK R M V +    +   E+ ++IDMD V    ++  E  GI+F+DE DKI+  
Sbjct: 238 TGGNKKKKKRTMKVSEARKVIANQEAQKMIDMDEVQEIGVREAEQNGIIFIDEIDKII-- 295

Query: 259 DSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
           DSG+   G  VSREGVQRD+LP+VEGS+V+TKYG + TD ILFI +GAF+V+   D++PE
Sbjct: 296 DSGSHRGGPDVSREGVQRDILPIVEGSTVNTKYGPVKTDFILFIGAGAFNVANIEDMIPE 355

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGRFPV V L+SL + +F  ILT  E+ ++ QY  L++TEGI L F E+++ A+A +A 
Sbjct: 356 LQGRFPVSVQLESLTEENFVEILTKPENAIVKQYAYLLQTEGIELQFEEEALKAIASIAY 415

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             N    +IGARRL TV E +LE+ISF ASD  E   VID  YV
Sbjct: 416 AKNEEDENIGARRLHTVFEELLEEISFYASDYDEDVFVIDKNYV 459


>gi|221054412|ref|XP_002258345.1| atp-dependent heat shock protein [Plasmodium knowlesi strain H]
 gi|193808414|emb|CAQ39117.1| atp-dependent heat shock protein, putative [Plasmodium knowlesi
           strain H]
          Length = 836

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/437 (44%), Positives = 288/437 (65%), Gaps = 9/437 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D+R +++PKNIL++GPTGVGKT 
Sbjct: 401 PHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGKTE 460

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA  
Sbjct: 461 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQE 520

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDIPGGAS 186
             E  IL +L+G       + ++RK L+DG + DK + I++ +  ++   SN  +     
Sbjct: 521 TVENIILYSLLGNIKEE-EKSIWRKYLKDGSLDDKVVSIDIPNYVNNNMFSNDSVENAVK 579

Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             + N   + S K++     K   K  M++++   +L++ E D  ++ D + + +I  VE
Sbjct: 580 EALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVE 639

Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             GIVF+DE DKI ++   S NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILFIA
Sbjct: 640 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 699

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF   +P D+L E+QGR PV V+L SL  +DF  ILT T +NL+ Q   L+KTEGI L
Sbjct: 700 SGAFQRVKPNDMLNELQGRLPVHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGIDL 759

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   KT+VID E V+
Sbjct: 760 QFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDKEKVK 819

Query: 421 LHIGDFPSETDMYHFIL 437
             +  F  + D+  +I+
Sbjct: 820 KSLEGFIKQFDLKKYII 836


>gi|330685673|gb|EGG97314.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU121]
          Length = 467

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/460 (40%), Positives = 297/460 (64%), Gaps = 29/460 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT--REVFRK--------------------KLRDGEI 160
           +  A ++++  LV     K +  N     +F                      K +  EI
Sbjct: 128 TQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSEI 187

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR--MSVQKCYP 217
             +  + ++ +    I     PG   +   N ++    +M     KKK+   + V+    
Sbjct: 188 KKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKKKVEREVPVKTARK 247

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VS++GVQRD+LP
Sbjct: 248 ILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSKQGVQRDILP 307

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+  DF  I
Sbjct: 308 ILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRI 367

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + + +L+ QY+ L++TE + ++F++++I  LA++A  +N    +IGARRL T++E++L
Sbjct: 368 LKEPKLSLVKQYEALLQTEEVTVNFSDEAITRLAEIAYQVNQDTDNIGARRLHTILEKML 427

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 428 EDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|242309065|ref|ZP_04808220.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum
           MIT 98-5489]
 gi|239524489|gb|EEQ64355.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum
           MIT 98-5489]
          Length = 440

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/446 (42%), Positives = 297/446 (66%), Gaps = 21/446 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV+ LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVAYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E  R + R  A
Sbjct: 61  TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVIASINLVKEEHRQKNR--A 118

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            I  E+ +LD +V K                  N  E  R+K+++GE+   +I+IE+   
Sbjct: 119 GI--EKYVLDKIVEKLIPPLPKGASEQKIEEYENAAEKMRQKVKNGEMDHLKIEIEIPKR 176

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           + +I + ++P   +     ++ +F        KK++  ++++    L  + S+ L+D+++
Sbjct: 177 TFEIEDGNMPAEFAKVQETIARVFIASPKDNPKKEV--TIKEAKEILKVEASEALLDLES 234

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           + ++ ++  EN GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS V+TKYGSI
Sbjct: 235 IKQEGLKRAENSGIIFIDEIDKVAVSSNSQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSI 294

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY+ 
Sbjct: 295 KTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEA 354

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LM  E + L F++++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + + 
Sbjct: 355 LMAVEEVSLKFSDEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQE 414

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V I    V+  +    +++D+  +IL
Sbjct: 415 VEITESLVKEKLETLVADSDVARYIL 440


>gi|301299323|ref|ZP_07205608.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853063|gb|EFK80662.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 467

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR QA+
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126

Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157
             A +R++  +V  K    N  +     LRD                             
Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186

Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
                G + + E+ I+V D S+  +N     G  +GI +LS L S  M   +K +  M+V
Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREGVQ
Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+  
Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL T+
Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLNQYIL 467


>gi|227890939|ref|ZP_04008744.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867348|gb|EEJ74769.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 467

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR QA+
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126

Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157
             A +R++  +V  K    N  +     LRD                             
Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186

Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
                G + + E+ I+V D S+  +N     G  +GI +LS L S  M   +K +  M+V
Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREGVQ
Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+  
Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL T+
Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467


>gi|332673693|gb|AEE70510.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter
           pylori 83]
          Length = 443

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 188/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+ ++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIVKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF   D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFETEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|288573038|ref|ZP_06391395.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568779|gb|EFC90336.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 474

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/468 (44%), Positives = 302/468 (64%), Gaps = 43/468 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  IVS LDRYI+GQ  AKRAVAIALRNR+RR+ L  +L  E+ PKNIL+VGPTGVGKT 
Sbjct: 11  PSAIVSYLDRYIVGQDKAKRAVAIALRNRFRRRMLDPELAKEVAPKNILMVGPTGVGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V++   ++V+  A  
Sbjct: 71  IARRLAELVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIQMVKKRMLEDVQTPAME 130

Query: 129 NAEERILDALV-GKTATSNTREVF------------------------------RKKLRD 157
            A +R++D LV GK   S     F                              R KL D
Sbjct: 131 RARDRVVDFLVPGKKTRSGGMPTFMSVIKGMSGEDDSQEEEQETPEEDRMRQSTRSKLLD 190

Query: 158 ----GEISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRM 210
               G++ D+E++IE+ ++        I GGA +   GI NL E+   +M   +KK+  M
Sbjct: 191 LLAQGKLDDREVEIEIQESPQ--MGIPIMGGAGMDEMGI-NLGEMLGGLM-PKKKKRKTM 246

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSRE 269
            V+     L  +E+++LID++   R  ++  +  GI+F+DE DKIV++ SG G   VSR+
Sbjct: 247 KVKDALRVLQNEEAEKLIDVEAATRMGMEKAQEEGIIFVDEIDKIVSKGSGGGGHDVSRD 306

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLP+VEG +V TK+G ++TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L++L
Sbjct: 307 GVQRDLLPVVEGCTVQTKHGQVSTDHVLFIAAGAFHQSKPSDLVPELQGRFPIRVELEAL 366

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +K+    ILT+ + +LI QY+ L+KTE + L F ++ +  +A +A  +N  + +IGARRL
Sbjct: 367 DKAQLARILTEPKHSLIEQYEALLKTEEVYLVFEDEGVREIASLAERMNLEMENIGARRL 426

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LEDISF A + + +T  +D  +V+  +     ++D+  ++L
Sbjct: 427 HTMVEQLLEDISFEAPERKGETFTVDGSFVKDRLEPLVKDSDVRRYLL 474


>gi|313680128|ref|YP_004057867.1| heat shock protein hslvu, atpase subunit hslu [Oceanithermus
           profundus DSM 14977]
 gi|313152843|gb|ADR36694.1| heat shock protein HslVU, ATPase subunit HslU [Oceanithermus
           profundus DSM 14977]
          Length = 419

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 277/434 (63%), Gaps = 19/434 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y+IGQQ+AK+AVA+ALRNR+RRQ+LP +LR E+ PKNIL++GPTGVG
Sbjct: 3   ELTPREIVAELDKYVIGQQEAKKAVAVALRNRYRRQKLPPELRREVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL+GAPF+KVE TKFTE+GYVGR+V+ I+RDL +VA  +V   + ++V   
Sbjct: 63  KTEIARRLARLSGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMREKTEQV--- 119

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRD--GEISDKEIDIEVADTSSDISNFDIPG 183
                      A+  + A+S   ++      D    + D E           +    + G
Sbjct: 120 ----------AAVAARLASSQIAQMLNVPHEDVSAGLYDHEYVEVEVPEEPKLPFMGMLG 169

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G    +  L ++ S ++   R  + RM V +    L   E++RL+D + V +++++  + 
Sbjct: 170 GMEGQMQGLQDMLSGLLPK-RPVRKRMRVVEAREVLKNQEAERLVDKEEVSQEAVRRAQE 228

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI    +  G  VS EGVQRDLLP+VEG+ V+T+ G I+T+H+LFI +GA
Sbjct: 229 DGIVFLDEIDKIAGSSAVQGPDVSGEGVQRDLLPIVEGTVVNTRLGPISTEHVLFIGAGA 288

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           F+V++P+DL+PE+QGRFP+RV L  L   DF  IL  TE++LI QY EL+ T+G  L F 
Sbjct: 289 FNVAKPSDLIPELQGRFPIRVELAELTAEDFERILRHTENSLIKQYTELLATDGTELVFA 348

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++I A+AD A   N  + DIGARRL TV+E +LE++SF    ++   V I  EYV   +
Sbjct: 349 DEAIRAVADFAYRANRELEDIGARRLATVLEYLLEEVSFQ---VELGRVEITKEYVEERL 405

Query: 424 GDFPSETDMYHFIL 437
                  D+  +IL
Sbjct: 406 ASVLESEDLSRYIL 419


>gi|224534246|ref|ZP_03674824.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii
           A14S]
 gi|224514348|gb|EEF84664.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii
           A14S]
          Length = 448

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+ +E   + VRE A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMAKEEMYNTVREDALV 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  DF+ IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDFKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A+   N+N    ++GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAIDRIAEFTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|111115120|ref|YP_709738.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia afzelii
           PKo]
 gi|216263956|ref|ZP_03435950.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii
           ACA-1]
 gi|110890394|gb|ABH01562.1| heat shock protein [Borrelia afzelii PKo]
 gi|215980000|gb|EEC20822.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii
           ACA-1]
          Length = 448

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|217032969|ref|ZP_03438442.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128]
 gi|216945298|gb|EEC23973.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128]
          Length = 438

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/443 (42%), Positives = 296/443 (66%), Gaps = 17/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGVGK
Sbjct: 1   MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    +++++++ 
Sbjct: 61  TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 120

Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S +I
Sbjct: 121 EEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEI 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +  
Sbjct: 181 DS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKM 235

Query: 236 DSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI T+
Sbjct: 236 EGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTE 295

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L+K
Sbjct: 296 HILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQALLK 355

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V I
Sbjct: 356 VEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSVTI 415

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
             E V+  + D  ++ ++  +IL
Sbjct: 416 TKELVQSKLEDLVADENLVKYIL 438


>gi|270290227|ref|ZP_06196452.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus
           acidilactici 7_4]
 gi|304384959|ref|ZP_07367305.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus
           acidilactici DSM 20284]
 gi|270281008|gb|EFA26841.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus
           acidilactici 7_4]
 gi|304329153|gb|EFL96373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus
           acidilactici DSM 20284]
          Length = 470

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/476 (42%), Positives = 300/476 (63%), Gaps = 48/476 (10%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N +P+EIV++LD ++IGQ+ AKRAVA+ALRNR+RR QL AD+++++ PKN+L++GPT
Sbjct: 2   LKENLTPQEIVNQLDEFVIGQKSAKRAVAVALRNRYRRLQLSADMQEDITPKNLLMIGPT 61

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+++  E    +V
Sbjct: 62  GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHLEEERAFKDV 121

Query: 123 REQASINAEERILDALV--------------------------GKTAT------------ 144
           R +A+ NA+ RI++ LV                          GKT T            
Sbjct: 122 RMEAAKNADHRIVELLVPVPEDPKQNSAVDFQNMMNMFTQMQQGKTPTDFQPSGQNVPDD 181

Query: 145 -SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               R     KL  G + ++ + IE+ D   + +N  +     +GI +L+E  S ++   
Sbjct: 182 IKEKRMDTASKLAKGLLENEMVTIEMDDPKQNNNNNMM---NQMGI-DLNESLSGLLP-- 235

Query: 204 RKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
            KKKI   + V++    L+++ESD+L++   ++ ++IQ  EN GI+F+DE DKI      
Sbjct: 236 -KKKISRTVPVREAREILIKEESDKLVNHGDLYHNAIQRAENTGIIFIDEIDKITGSGQN 294

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
               VSR+GVQRD+LP+VEGS V+TKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP
Sbjct: 295 TSSDVSRQGVQRDILPIVEGSQVNTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFP 354

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +RV L  L+K DF  ILT+ ++ L+ QY  L+ T+ + + FT ++I+ +A++A  +N   
Sbjct: 355 IRVELNDLSKDDFVKILTEPKNALVKQYIALIGTDNVKVTFTIEAIERIAEIAEQVNHET 414

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +IGARRL T++E++LEDI F    ++   V I  +YV   IG      D+  FIL
Sbjct: 415 ENIGARRLHTILEKLLEDILFEGPSMEMGEVTITEKYVDSKIGSIAGNKDLSEFIL 470


>gi|217034384|ref|ZP_03439799.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10]
 gi|216943179|gb|EEC22649.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10]
          Length = 443

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV----RESRRD 120
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    +E  +D
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 121 EVREQASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           ++ E       ++ L  L        K   +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|124506697|ref|XP_001351946.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum
           3D7]
 gi|23504974|emb|CAD51757.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum
           3D7]
          Length = 922

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 286/437 (65%), Gaps = 9/437 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D++ +++PKNIL++GPTGVGKT 
Sbjct: 487 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRIQVSDDMKKDIIPKNILMIGPTGVGKTE 546

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA  
Sbjct: 547 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAEE 606

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISNFDIPGGAS 186
             E  IL +L+G       + ++RK L+DG + DK I I++ +   ++  SN  +     
Sbjct: 607 TVENIILYSLLGNIKEE-EKNIWRKYLKDGSLDDKVISIDIPNYINNNIFSNDSVENAVK 665

Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             + N   + S K++     K   K  M++++   +L++ E D  I+ DT+ + +I  VE
Sbjct: 666 EALSNHQNIKSVKIIHQNINKQSDKKTMTIREARQKLLQLEIDSSINQDTILKTAINSVE 725

Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             GIVF+DE DKI ++   S NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILFIA
Sbjct: 726 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 785

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF   +P D+L E+QGR PV V L SL   DF  ILT T +NL+ Q   L+KTEGI L
Sbjct: 786 SGAFQRVKPNDMLNELQGRLPVHVTLSSLTIKDFIDILTKTHNNLLQQNIALLKTEGIDL 845

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   +++VID + V 
Sbjct: 846 KFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNQSIVIDKDKVN 905

Query: 421 LHIGDFPSETDMYHFIL 437
             +  F  + D+  +I+
Sbjct: 906 KSLEGFIKQYDLKKYII 922


>gi|295426270|ref|ZP_06818930.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064009|gb|EFG54957.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           amylolyticus DSM 11664]
          Length = 458

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 187/460 (40%), Positives = 288/460 (62%), Gaps = 36/460 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  L++YIIGQ +AK++VAIAL NR+RR QLP  ++ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKKIVELLNQYIIGQDEAKKSVAIALYNRYRRMQLPKQMQKDITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGRNVE ++RDL   ++ +  +   +E+R +A+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRNVESMVRDLAAKSVQMEEKKEFEEIRPEAA 124

Query: 128 INAEERILDALVG----------------------------KTATSNTREVFRKKLRDGE 159
             A + ++ ALV                                  N R    ++L  G 
Sbjct: 125 KEANKELVKALVPGIKHEHHYDSVFSFLNNLDDEEFDDEEVNDDIRNKRMTIAEQLNKGL 184

Query: 160 ISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           + D+++ IEV +        D+ G  G  +G + LS +  K     RK K  + V+    
Sbjct: 185 LEDRDVTIEVEEKPKASPMSDMMGQMGMDIGSM-LSNMIPK-----RKIKRTLPVKDARE 238

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+ +ES +++D D++++ +I+  +N GI+F+DE DK++A +      VSREGVQRD+LP
Sbjct: 239 LLINEESRKMVDYDSLYQRAIERAQNNGIIFIDEIDKVIAGNKKTSGEVSREGVQRDILP 298

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TK+G ++TDH+LFI +GAF  S+P+DL+PE+QGRFP+RV L +L K DF  I
Sbjct: 299 IVEGSTVQTKFGPLSTDHVLFIGAGAFAESKPSDLIPELQGRFPIRVQLDALTKDDFVHI 358

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L D E++L+ QY  LMK +GI L FT++++D +A++A  +N    +IGARRL T++E++L
Sbjct: 359 LKDPENSLLKQYVALMKADGIKLIFTQEAVDRIAEIAYEVNQGTDNIGARRLSTILEKLL 418

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+ +   D++   + +   YV   + D     D+  FIL
Sbjct: 419 EDVLYEGPDMEMGEITVTEAYVEEKLKDVIINKDLTKFIL 458


>gi|239636268|ref|ZP_04677270.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           warneri L37603]
 gi|239597623|gb|EEQ80118.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           warneri L37603]
          Length = 467

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 186/460 (40%), Positives = 297/460 (64%), Gaps = 29/460 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++A
Sbjct: 68  TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDEA 127

Query: 127 SINAEERILDALV----GKTATSNT--REVFRK--------------------KLRDGEI 160
           +  A ++++  LV     K +  N     +F                      K +  EI
Sbjct: 128 TQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSEI 187

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR--MSVQKCYP 217
             +  + ++ +    I     PG   +   N ++    +M     KKK+   + V+    
Sbjct: 188 KKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKKKVEREVPVKTARK 247

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VSR+GVQRD+LP
Sbjct: 248 ILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQGVQRDILP 307

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EGS + T+YG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+  DF  I
Sbjct: 308 ILEGSMIQTQYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRI 367

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + + +L+ QY+ L++TE + ++F++++I  LA++A  +N    +IGARRL T++E++L
Sbjct: 368 LKEPKLSLVKQYEALLQTEEVTVNFSDEAIIRLAEIAYQVNQDTDNIGARRLHTILEKML 427

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 428 EDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|308063688|gb|ADO05575.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Sat464]
          Length = 443

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 187/444 (42%), Positives = 293/444 (65%), Gaps = 15/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +I + ++P        N+ + F K     +K    +SV++    L  + SD L+D + + 
Sbjct: 184 EIDS-NVPPEILRVQENVIKFFHKEQDKVKK---TLSVKEAKEALKAEISDTLLDGEAIK 239

Query: 235 RDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I T
Sbjct: 240 MEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           +HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L+
Sbjct: 300 EHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQALL 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K EGI + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V 
Sbjct: 360 KVEGIEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I  E ++  + D  ++ ++  +IL
Sbjct: 420 ITKELIQSKLEDLVADENLVKYIL 443


>gi|90961923|ref|YP_535839.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           salivarius UCC118]
 gi|122448948|sp|Q1WTJ0|HSLU_LACS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|90821117|gb|ABD99756.1| ATP-dependent hsl protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
          Length = 467

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRIQLPKDMQEDISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR QA+
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126

Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157
             A +R++  +V  K    N  +     LRD                             
Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186

Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
                G + + E+ I+V D S+  +N     G  +GI +LS L S  M   +K +  M+V
Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREGVQ
Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+  
Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL T+
Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467


>gi|254779462|ref|YP_003057567.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori B38]
 gi|254001373|emb|CAX29358.1| ATP-dependent Hsl protease ATP-binding, subunit HslU [Helicobacter
           pylori B38]
          Length = 443

 Score =  358 bits (919), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 189/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ EG+ + F +D+I  LA ++ N N    DIGAR L T +E+VLEDISF A D   + V
Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARMLHTTIEKVLEDISFEAEDYFGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|315038214|ref|YP_004031782.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1112]
 gi|325956669|ref|YP_004292081.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus 30SC]
 gi|312276347|gb|ADQ58987.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1112]
 gi|325333234|gb|ADZ07142.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus 30SC]
 gi|327183492|gb|AEA31939.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1118]
          Length = 465

 Score =  358 bits (919), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 192/466 (41%), Positives = 294/466 (63%), Gaps = 41/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLNKEMQKEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + + + V+ QA+
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFERVKPQAT 124

Query: 128 INAEERILDALVGKTATSN-----------------------------TREV------FR 152
             A ++++  L       N                             T EV        
Sbjct: 125 KEANKQLVRLLAPGVKRENRESQMQQMQDMMSMLMGGNNQNNNDEEEVTDEVRNQRMDVA 184

Query: 153 KKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  + 
Sbjct: 185 EKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTLP 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREGV
Sbjct: 240 VREAREVLIQEESRKMVDYDTIYQSAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K
Sbjct: 300 QRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTK 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL T
Sbjct: 360 DDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFSVNQGTDNIGARRLST 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ +   D++   + I   YV   +GD  +  D+  FIL
Sbjct: 420 ILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIITNKDLTKFIL 465


>gi|224418107|ref|ZP_03656113.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253827434|ref|ZP_04870319.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253510840|gb|EES89499.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 446

 Score =  358 bits (919), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 190/454 (41%), Positives = 299/454 (65%), Gaps = 25/454 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+     +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G
Sbjct: 1   MENYIAMTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E    
Sbjct: 61  STGVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKE---- 116

Query: 121 EVREQASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEID 166
           E R++ +   ++ +LD +V K                     E  R+K+ +GE+   +I+
Sbjct: 117 EHRQKNAQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIE 176

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDES 224
           IEV   + +I + ++P   +     + E  ++V  +  K+  K  +S+++    L  + S
Sbjct: 177 IEVPKRAFEIEDGNMPAEFA----KVQETIARVFIASPKENPKKEVSIKEAKEILKIEAS 232

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSS 283
           + L+D++++ ++ ++  E+ GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS 
Sbjct: 233 EALLDLESIKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSI 292

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYGSI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T++
Sbjct: 293 VNTKYGSIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKN 352

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +++ QY+ L+  E + L F+E++I ALA  +   N    DIGARRL TV+E+V+E+ISF 
Sbjct: 353 SILKQYEALLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFE 412

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A + + + V I    V+  + +  + +D+  +IL
Sbjct: 413 AENYKGQEVEITESLVKEKLDNLVANSDIARYIL 446


>gi|313141642|ref|ZP_07803835.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313130673|gb|EFR48290.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 440

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/448 (42%), Positives = 297/448 (66%), Gaps = 25/448 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E    E R++ 
Sbjct: 61  TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKE----EHRQKN 116

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +   ++ +LD +V K                     E  R+K+ +GE+   +I+IEV   
Sbjct: 117 AQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIEIEVPKR 176

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDM 230
           + +I + ++P   +     + E  ++V  +  K+  K  +S+++    L  + S+ L+D+
Sbjct: 177 AFEIEDGNMPAEFA----KVQETIARVFIASPKENPKKEVSIKEAKEILKIEASEALLDL 232

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYG 289
           +++ ++ ++  E+ GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS V+TKYG
Sbjct: 233 ESIKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSIVNTKYG 292

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           SI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY
Sbjct: 293 SIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQY 352

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+  E + L F+E++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + 
Sbjct: 353 EALLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKG 412

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + V I    V+  + +  + +D+  +IL
Sbjct: 413 QEVEITESLVKEKLDNLVANSDIARYIL 440


>gi|297379708|gb|ADI34595.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter pylori
           v225d]
          Length = 443

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|148977244|ref|ZP_01813871.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145963526|gb|EDK28789.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 369

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/357 (52%), Positives = 252/357 (70%), Gaps = 16/357 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMKKVQFRA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA  
Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSSEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F  + G   KKK +M ++  +  L  +E+ +L++ + 
Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGD-TKKKRKMKIKDAFKALTEEEAAKLVNQEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +  ++I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + 
Sbjct: 242 LKENAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY
Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSANDFKRILTEPKASLTEQY 358


>gi|68071657|ref|XP_677742.1| ATP-dependent heat shock protein [Plasmodium berghei strain ANKA]
 gi|56497972|emb|CAI00125.1| ATP-dependent heat shock protein, putative [Plasmodium berghei]
          Length = 600

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 186/439 (42%), Positives = 292/439 (66%), Gaps = 11/439 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GPTGVGKT 
Sbjct: 163 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDDDMKKDVIPKNILMIGPTGVGKTE 222

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +    +E++EQA  
Sbjct: 223 IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKSKMENEIKEQAEE 282

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD----TSSDISNFDIPGG 184
             +  IL +L+G +     +++++K L++G + DK I+I++       ++  +N  +   
Sbjct: 283 TVDNIILYSLLGNSIKYEEKQIWKKYLKEGLLDDKIINIDIPSYINNNNNMFTNDSVENA 342

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  I+ D + + +I  
Sbjct: 343 VKEALSNHQNIKSVKIIHQNMNKQNDKRTMTIKEAKQKLLQIEIDSSINQDVILKTAINS 402

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 403 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 462

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+Q R PV V+L SL+  DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 463 IASGAFQRVKPNDMLNELQ-RLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGI 521

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++       K++VID E 
Sbjct: 522 DLNFTDDAIESIANAAHDMNTHIENIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEV 581

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +  F  + D+  +I+
Sbjct: 582 VKKSLEGFIKQFDLKKYII 600


>gi|224437278|ref|ZP_03658250.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313143733|ref|ZP_07805926.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313128764|gb|EFR46381.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 442

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 296/447 (66%), Gaps = 23/447 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV  LD YIIGQ +AK+AVAIALRNR+RR +L  +++DE+ PKNIL++G TGVG
Sbjct: 4   NMTPKQIVEYLDGYIIGQSEAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGSTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  ++N+V    R   + Q
Sbjct: 64  KTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQ--KAQ 121

Query: 126 ASIN------AEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTS 173
           A IN        +++L  L    + S   E        ++K+  GE+ + +I+IE++   
Sbjct: 122 AEINDYIIEKITKKLLPPLPQGASESKQNEYDISFAKMKQKVLKGEVDELKIEIEIS-KK 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           + + + ++P      ++ + E   KV+  +  K K  +SV++    LM + ++ ++D + 
Sbjct: 181 AQVGDDNLPPD----MIKVQESIFKVLNVTNDKVKKEVSVKEAKEALMYEATESVLDSEA 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           +  + ++  E+ G++F+DE DK+   ++DS      S+EGVQRDLLP+VEGS V+TKYG 
Sbjct: 237 IRAEGLKRAESNGVIFIDEIDKVAVGSKDSSRQ-DPSKEGVQRDLLPIVEGSVVNTKYGQ 295

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TD+ILFIA+GAFH S+P+DL+PE+QGRFP+RV L SLN+     ILT T+S+L+ QY+
Sbjct: 296 IKTDYILFIAAGAFHFSKPSDLIPELQGRFPLRVELDSLNEESLYKILTQTKSSLLRQYQ 355

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE I L+F++++I  +A ++ + N    DIGARRL T +ERVLE+ISF+    Q K
Sbjct: 356 LLLDTENIRLEFSDEAIREIAKLSHSANERTEDIGARRLHTTIERVLEEISFNIDTYQGK 415

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V I AE V+  +GD     D+  +IL
Sbjct: 416 EVTITAEMVKERLGDVVENVDLARYIL 442


>gi|259046720|ref|ZP_05737121.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella
           adiacens ATCC 49175]
 gi|259036616|gb|EEW37871.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella
           adiacens ATCC 49175]
          Length = 468

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/469 (42%), Positives = 305/469 (65%), Gaps = 33/469 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   + +PRE+VSELD++I+GQQDAKRA+A+ALRNR+RR  L  +++ E+ PKN+L++G
Sbjct: 1   MQANISKTPREVVSELDQFIVGQQDAKRALAVALRNRYRRLLLDEEMKKEVTPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT ++RRLA+L  APF KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +++
Sbjct: 61  PTGVGKTELARRLAKLVDAPFAKVEATKFTEVGYVGRDVESMVRDLVENAIQIVTKLKQE 120

Query: 121 EVREQA---SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-- 175
           EV+ QA   ++    +IL   + K  ++  ++      +   I +  ++ E+ +  ++  
Sbjct: 121 EVKLQAFDKAVKKLAKILKPGIMKKVSNPQQDSLFNMFQQMGIQNPGLEPEMKEEVTEEI 180

Query: 176 -ISNFDIPGGASVGILN-------LSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--- 224
             S  DI      G+L+       L+E   ++ GSG + +  M +Q    ++   +    
Sbjct: 181 AQSRRDIEQQLRNGVLDSKEVTIELTEKPMRMAGSGNQMEQMMQIQSVLDQMTPKKKISR 240

Query: 225 ----------------DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
                           + LI+ + +H +++++ E  GI+F+DE DKI A+   NG  VSR
Sbjct: 241 TVTVKEALELLTEEEANNLINQEDMHAEALKLAETSGIIFIDEIDKIAAKGQ-NGGEVSR 299

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG INTDHILFIASGAFHV++P+DL+PE+QGRFP+RV L+ 
Sbjct: 300 EGVQRDILPIVEGSQVNTKYGVINTDHILFIASGAFHVAKPSDLMPELQGRFPIRVELQD 359

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+K DF  IL + ++ L+ QYK L+ TE + + FT++++  LA++A  +NST+ +IGARR
Sbjct: 360 LSKEDFERILMEPKNALLKQYKALLATENVEVVFTKEAVSKLAEIAFEVNSTMENIGARR 419

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E VLE++ F A  +Q  ++ I  +YV   +     + D+  +IL
Sbjct: 420 LHTILETVLEELLFEAPTMQMGSIQITEQYVESKLNAIREDQDLTKYIL 468


>gi|300361602|ref|ZP_07057779.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           gasseri JV-V03]
 gi|300354221|gb|EFJ70092.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + D V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KVQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G + ++E+ IEV          D+ G   +GI ++S L   +M     K+  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|81428595|ref|YP_395595.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610237|emb|CAI55286.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 475

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/474 (41%), Positives = 297/474 (62%), Gaps = 46/474 (9%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+ IV+ELD+++IGQ  AK+AVA+AL NR+RR QL   ++ E+ PKN+L++GPTGV
Sbjct: 7   MNKTPKSIVAELDKFVIGQDKAKKAVAVALYNRYRRMQLSTKMQQEITPKNLLMIGPTGV 66

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  AP IKVE TKFTE+GYVGR+VE ++RDL DVA+++    +   VR 
Sbjct: 67  GKTEIARRLAKVVDAPLIKVEATKFTEVGYVGRDVESMVRDLADVAVHMEESEQFKNVRG 126

Query: 125 QASINAEERILDALV--------------------------GKTAT----SNTREV---- 150
           +A+  A++R++  LV                          G+T      + T EV    
Sbjct: 127 KAARQADKRLVKLLVPGIKKEQRKNNNSMNDLMSMFTALQNGETPAGLNQAETEEVTDEV 186

Query: 151 ------FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
                  +++L  G + D+EI+I+V +        D+ G   +GI +L++    +M   +
Sbjct: 187 RDQRLSVKEQLDKGLLDDREIEIQVDEPKKAAPMNDMMG--QMGI-DLNDTLGSIMP--K 241

Query: 205 KKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK +R ++V++     +++ESD+L++   ++ D++Q  EN GI+F+DE DKI A      
Sbjct: 242 KKMVRTVTVKEAREIFIQEESDKLVNHADIYHDALQRAENTGIIFIDEIDKIAAGGKKQS 301

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSREGVQRD+LP+VEGS V+TKYG + TDHILFI SGAF  S+P+DL+ E+QGRFP+R
Sbjct: 302 GEVSREGVQRDILPIVEGSQVNTKYGVLKTDHILFIGSGAFAESKPSDLIAELQGRFPIR 361

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L+ L ++DF  ILT+  + L+ QY  L+  +G+ + FT ++I  +A +A  +N    +
Sbjct: 362 VELEDLTEADFVRILTEPNNALVKQYMALIGADGVHVTFTMEAIGRIAAIAFQVNHDTEN 421

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LEDI F   D+Q   + I  +YV   IG   ++ D+  FIL
Sbjct: 422 IGARRLATILEKLLEDILFEGPDMQMGDITITEQYVNDKIGKIVADKDLTRFIL 475


>gi|256843166|ref|ZP_05548654.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           crispatus 125-2-CHN]
 gi|256850235|ref|ZP_05555664.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|262046373|ref|ZP_06019335.1| heat shock protein [Lactobacillus crispatus MV-3A-US]
 gi|293380242|ref|ZP_06626323.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus 214-1]
 gi|295692922|ref|YP_003601532.1| ATP-dependent protease hslvu, atpase subunit hslu [Lactobacillus
           crispatus ST1]
 gi|312977301|ref|ZP_07789049.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus CTV-05]
 gi|256614586|gb|EEU19787.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           crispatus 125-2-CHN]
 gi|256712872|gb|EEU27864.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|260573244|gb|EEX29802.1| heat shock protein [Lactobacillus crispatus MV-3A-US]
 gi|290923209|gb|EFE00131.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus 214-1]
 gi|295031028|emb|CBL50507.1| ATP-dependent protease HslVU, ATPase subunit HslU [Lactobacillus
           crispatus ST1]
 gi|310895732|gb|EFQ44798.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus CTV-05]
          Length = 465

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/464 (42%), Positives = 298/464 (64%), Gaps = 37/464 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKTQAT 124

Query: 128 INAEERILDALVGKTATSNTRE------VFRKKLRDGEISDKEIDIEVADTSSDISN--F 179
             A + ++  L+        RE           +  GE +++E D E  D S+D+ N   
Sbjct: 125 KEANKELV-RLLAPAEKHERRENQMQQMQDMMSMLMGE-NNREEDHE-EDVSADVRNKRM 181

Query: 180 DIPGGASVGILNLSELFSKVMGSGR------------------------KKKIR--MSVQ 213
           D+    + G+L   E+  +V  + +                        KKK++  +SV+
Sbjct: 182 DVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSVK 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+D D +++ +I+  +N GI+F+DE DKI+A +  N   VSREGVQR
Sbjct: 242 EAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQR 301

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 302 DILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 361

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL T++
Sbjct: 362 FVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTIL 421

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ +   D++   + +   YV   +GD     D+  FIL
Sbjct: 422 EKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 465


>gi|70952370|ref|XP_745358.1| ATP-dependent heat shock protein [Plasmodium chabaudi chabaudi]
 gi|56525655|emb|CAH76832.1| ATP-dependent heat shock protein, putative [Plasmodium chabaudi
           chabaudi]
          Length = 471

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/439 (42%), Positives = 290/439 (66%), Gaps = 10/439 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GPTGVGKT 
Sbjct: 33  PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGKTE 92

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E++EQA  
Sbjct: 93  IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKNKMETEIKEQAEE 152

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD----ISNFDIPGG 184
                IL +L+G       +++++K L++G + DK I+I++ +  ++     +N  +   
Sbjct: 153 AVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIINIDIPNYINNNNNMFTNDSVENA 212

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  I+ D + + +I  
Sbjct: 213 VKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDAILKTAISS 272

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 273 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 332

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+QGR PV V+L SL+  DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 333 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIKDFIEILTKTHNNLLKQNIALLKTEGI 392

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++       KT+VID E 
Sbjct: 393 DLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKIMEEINYDVHKNANKTIVIDKEV 452

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +  F  + D+  +I+
Sbjct: 453 VKKSLEGFIKQFDLKKYII 471


>gi|227879133|ref|ZP_03997017.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
 gi|227861290|gb|EEJ68925.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
          Length = 468

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/464 (42%), Positives = 298/464 (64%), Gaps = 37/464 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ GPTGVGKT
Sbjct: 8   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTGVGKT 67

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 68  EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKTQAT 127

Query: 128 INAEERILDALVGKTATSNTRE------VFRKKLRDGEISDKEIDIEVADTSSDISN--F 179
             A + ++  L+        RE           +  GE +++E D E  D S+D+ N   
Sbjct: 128 KEANKELV-RLLAPAEKHERRENQMQQMQDMMSMLMGE-NNREEDHE-EDVSADVRNKRM 184

Query: 180 DIPGGASVGILNLSELFSKVMGSGR------------------------KKKIR--MSVQ 213
           D+    + G+L   E+  +V  + +                        KKK++  +SV+
Sbjct: 185 DVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSVK 244

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+D D +++ +I+  +N GI+F+DE DKI+A +  N   VSREGVQR
Sbjct: 245 EAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQR 304

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 305 DILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 364

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL T++
Sbjct: 365 FVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTIL 424

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ +   D++   + +   YV   +GD     D+  FIL
Sbjct: 425 EKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 468


>gi|116629575|ref|YP_814747.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238853066|ref|ZP_04643458.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           202-4]
 gi|282852046|ref|ZP_06261404.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           224-1]
 gi|311110782|ref|ZP_07712179.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           MV-22]
 gi|122273487|sp|Q043R3|HSLU_LACGA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116095157|gb|ABJ60309.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238834314|gb|EEQ26559.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           202-4]
 gi|282556806|gb|EFB62410.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           224-1]
 gi|311065936|gb|EFQ46276.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           MV-22]
          Length = 464

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + D V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KLQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G + ++E+ IEV          D+ G   +GI ++S L   +M     K+  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|42519038|ref|NP_964968.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           NCC 533]
 gi|62286843|sp|Q74JJ5|HSLU_LACJO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|41583325|gb|AAS08934.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii NCC 533]
          Length = 464

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVG---------------------------------KTATSNTRE 149
           + QA+  A  R++  +V                                    A  N R 
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDAIRNERL 180

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G + ++E+ IEV          D+ G   +GI ++S L   +M     K+  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|319957237|ref|YP_004168500.1| heat shock protein hslvu, atpase subunit hslu [Nitratifractor
           salsuginis DSM 16511]
 gi|319419641|gb|ADV46751.1| heat shock protein HslVU, ATPase subunit HslU [Nitratifractor
           salsuginis DSM 16511]
          Length = 440

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/444 (45%), Positives = 289/444 (65%), Gaps = 17/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV  LDRY+IGQQ+AK+ +AIALRNRWRR QL  +++ +++PKNIL++G TGVGK
Sbjct: 1   MTPQEIVEYLDRYVIGQQEAKKTIAIALRNRWRRMQLDEEMQRDVVPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLAR+   PFIKVE +KFTE+G+VGR+VE IIRDL   A+ +VRE   +  +E+ 
Sbjct: 61  TEISRRLARMMKLPFIKVEASKFTEVGFVGRDVESIIRDLTVTALQLVREEENERNKEKI 120

Query: 127 SINAEERILDALVGKT---ATSNTREVF-------RKKLRDGEISDKEIDIEVADTSSDI 176
               E +I++ L+      A+   R+ +       + +L  GE+   +I++E+     D+
Sbjct: 121 EAYVENKIIEKLLPPLPAGASEQKRQEYEASFARMQARLERGELDHLKIEVEMPPPGVDL 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKI--RMSVQKCYPELMRDESDRLIDMDTVH 234
           S  ++P   +    N+ E   KV+G   KK     ++V++    L  + S  L+D + + 
Sbjct: 181 SGGNVPPEMA----NVQESILKVLGGLGKKGQKKEVTVKEARKILEAEASQELLDEEKLK 236

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVFLDE DKI    +  G    S+EGVQRDLLP+VEGS+V+TK G +NT
Sbjct: 237 AKAIEKVEQGGIVFLDEIDKIAVPSNVTGRQDPSKEGVQRDLLPIVEGSTVTTKIGPVNT 296

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT+ +++LI QYK LM
Sbjct: 297 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELSSLDEEALYRILTEPKNSLIKQYKALM 356

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             EG+ L+F E ++ A+A  +   N    DIGARRL TVMER+LED+SF A   + +T+V
Sbjct: 357 AVEGVTLEFEESALRAIARYSALANEKTEDIGARRLHTVMERILEDLSFEADKRKGETIV 416

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID  +V   + +     D   +IL
Sbjct: 417 IDVAHVESKLEELVENEDTTRYIL 440


>gi|312879578|ref|ZP_07739378.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas
           paucivorans DSM 12260]
 gi|310782869|gb|EFQ23267.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas
           paucivorans DSM 12260]
          Length = 470

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/465 (45%), Positives = 300/465 (64%), Gaps = 34/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR +V+ LDRYI+GQ  AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGVG
Sbjct: 7   SLTPRTVVAYLDRYIVGQDKAKRAVAVALRNRIRRRRLPEELAREVSPKNILMVGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VR    +EV+E 
Sbjct: 67  KTEIARRLARLVEAPFVKVEATKFTEVGYVGRDVESMIRDLVEASVQMVRRRLIEEVQEP 126

Query: 126 ASINAEERILDALVGKTATS--------------------------------NTREVFRK 153
           A+  AEERILDAL+ +  T                                  TRE  R+
Sbjct: 127 AARAAEERILDALLPRPKTEAAVPDFLRLFGAGRETPPPAASPAPPEPEVREGTREKLRE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            LR G++  + +++EV + S         GG     LNL EL   +M   R K+  ++V+
Sbjct: 187 LLRAGKLDGRSVEVEVPEGSRVGMTLMGAGGLEEMGLNLGELLGGLMPK-RTKRKTVTVE 245

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272
           +    L  +E+++L+D + V R+++   E  GI+F+DE DKI    SG+G   VSREGVQ
Sbjct: 246 EARRLLQAEEAEKLVDQEAVVREAVAKAEQEGILFVDEIDKIAGGGSGHGGPDVSREGVQ 305

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG  V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGR P+RV L+ L + 
Sbjct: 306 RDLLPIVEGCVVQTKYGPVQTDHMLFIAAGAFHKTKPSDLVPELQGRLPIRVELQPLREE 365

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   IL + ES+L+ QY+ L+ TEG+ L F E  + ALA +A  +N  + DIGARRL T+
Sbjct: 366 DLVRILGEPESSLVRQYEALLGTEGVRLRFEESGLRALAALAARMNRDLEDIGARRLHTL 425

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE+ISF A + +E+ V +DA YV   +G    + +   ++L
Sbjct: 426 LEQLLEEISFQAPETEEQDVTVDAPYVEGRLGPLSEDREARKYLL 470


>gi|308182670|ref|YP_003926797.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori PeCan4]
 gi|308064855|gb|ADO06747.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori PeCan4]
          Length = 443

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 293/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKIKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYFGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|317009508|gb|ADU80088.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori India7]
          Length = 443

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/445 (42%), Positives = 293/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI       G    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEAGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQDV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|207092709|ref|ZP_03240496.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 443

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +I + ++P        N+ + F K     +K    +SV++    L  + SD L+D + + 
Sbjct: 184 EIDS-NVPPEILRVQENVIKFFHKEQDKVKK---TLSVKEAKEALKAEISDTLLDSEAIK 239

Query: 235 RDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            + ++  E+ G++F+DE DKI   +++SG     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 240 MEGLKRAESSGVIFIDEIDKIAVSSKESGRQ-DPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|219684673|ref|ZP_03539616.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           PBr]
 gi|219672035|gb|EED29089.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           PBr]
          Length = 448

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 302/444 (68%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEVDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    D+GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|23010578|ref|ZP_00051218.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 296

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/294 (62%), Positives = 232/294 (78%), Gaps = 3/294 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG G
Sbjct: 3   TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLTGPLRDEVAPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ +
Sbjct: 63  KTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183
           A   AE RILDALVG TA+  TRE FRKKLR+ E+ DKE++IE+A +    +  F+IPG 
Sbjct: 123 AEAAAEARILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G +NLS++  K +G  R K  R++V   Y  L+ +ESD+L+D D + R++I+ VE
Sbjct: 183 PGASMGAINLSDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           + GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHI
Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHI 296


>gi|188527647|ref|YP_001910334.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Shi470]
 gi|238691930|sp|B2UTX2|HSLU_HELPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188143887|gb|ACD48304.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           Shi470]
          Length = 443

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+           K   +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
           +I + ++P      IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI V+   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A +   + V
Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAENYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|116333448|ref|YP_794975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           ATCC 367]
 gi|116098795|gb|ABJ63944.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           brevis ATCC 367]
          Length = 476

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 299/468 (63%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+Y+IGQ +AK+A+AIALRNR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 13  TPKEIVGLLDQYVIGQDEAKKAIAIALRNRYRRMQLDPAMQEEISPKNMLMIGPTGVGKT 72

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF KVE +KFTE+GYVGR+VE ++RDLV+V++++ ++ +   VR  A+
Sbjct: 73  EIARRLAKIVHAPFTKVEASKFTEVGYVGRDVESMVRDLVEVSVSMQKQDQFKNVRADAT 132

Query: 128 INAEERILDALV-------------------------GKTATS------------NTREV 150
             A +R++  L                          G+T T+            N R  
Sbjct: 133 QAANKRLVKLLAPAKKKENKNNNDFANMMNMFTQMQNGQTPTAPNDQEEVTDEIRNERLS 192

Query: 151 FRKKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             ++L  G + +  ++IE+ D   ++ ++ ++ G   +GI +L++    +M   R K+  
Sbjct: 193 LTEQLNQGLLENHMVEIEMDDPQQANATDNNMLG--QMGI-DLNDTLGSIMPKKRIKRT- 248

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V +    L+ +ES++L++   ++ D+I+  EN GI+FLDE DKI    S N   VSRE
Sbjct: 249 VTVAEAREILVAEESEKLVNNADINHDAIKRAENTGIIFLDEIDKIAKGSSQNSGDVSRE 308

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEG+ V TKYG+I+TDHILFIA+GAF  S+P+DL+ E+QGRFP+RV L  L
Sbjct: 309 GVQRDILPIVEGTQVKTKYGTIDTDHILFIAAGAFAESKPSDLIAELQGRFPIRVELNDL 368

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +K+DF  ILT+  + LI QY  L+ T+ + + FT ++I+ +A++A  LN    +IGARRL
Sbjct: 369 SKADFVRILTEPNNALIKQYIALIGTDNVKVTFTMEAIERIAELAFELNHENQNIGARRL 428

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           QTV+E++LED+ +   D+    V I   YV   IGD     D+  +IL
Sbjct: 429 QTVLEKLLEDLLYEGPDMGTGDVTITESYVNDKIGDIVQNKDLSRYIL 476


>gi|224532088|ref|ZP_03672720.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana
           VS116]
 gi|224511553|gb|EEF81959.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana
           VS116]
          Length = 448

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVEELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APF+KVE TK+TE+GYVGR+VE ++RDL+ +A+N+V++     VRE A +
Sbjct: 71  IARRLSKLIKAPFLKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKDEMYSTVREDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+D+L   +  S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVDSLFKGSGNSKNIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E+++D +A++  N+N    ++GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAVDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|159465693|ref|XP_001691057.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas
           reinhardtii]
 gi|158279743|gb|EDP05503.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas
           reinhardtii]
          Length = 559

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 285/449 (63%), Gaps = 19/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+ +V  LD+YIIGQ DAKRAVA+A RNRWRR+++PA +RD+++PKNILL+GPTG G
Sbjct: 113 KMTPKSVVELLDKYIIGQDDAKRAVAVAYRNRWRRKRVPATIRDDIVPKNILLIGPTGCG 172

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++  I++VR   R +    
Sbjct: 173 KTEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAGISLVRSRLRKQHEAA 232

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             +  EERIL AL+ +       +  R +LR+GE+ D  I++++  +    S   I    
Sbjct: 233 LKMAVEERILAALLRQDHLGGA-DALRTRLRNGELEDAFIEVDLTSSGRGGSGGGIIDLG 291

Query: 186 SVG-------ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
             G       ++NL  L S      R  ++R  V++    L   E++R+   + + +++I
Sbjct: 292 GGGGGPQGPVVINLERLMSGKRDV-RTLRVRHGVREARSLLEDSEAERMFPPEQLVKEAI 350

Query: 239 QMVENYGIVFLDEFDKIVARDSGN----GIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
              E  GIVF+DE DKIV+   G         S EGVQRDLLP++EGS VSTK+G++NTD
Sbjct: 351 TATEQDGIVFIDEIDKIVSGGRGERSWRSGDPSSEGVQRDLLPIIEGSVVSTKHGNVNTD 410

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI +GAFH  +P+DL+ E+QGR P+RV LK L + DF  ILT+ E NLI Q + L+ 
Sbjct: 411 HILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFLRILTEPEYNLIKQQQVLLA 470

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ------ 408
            EGI L+FT D++  +  VA  +N T+ +IGARRL  V+ERV+E++SFSA +L+      
Sbjct: 471 AEGIELEFTADALAEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSFSAPELKGAYTGP 530

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +    ID  +V   +     + D+  +IL
Sbjct: 531 KVKYFIDKAHVDRTLSSLLQKQDLSRYIL 559


>gi|219685629|ref|ZP_03540444.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           Far04]
 gi|219672817|gb|EED29841.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           Far04]
          Length = 448

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 302/444 (68%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEVDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKYKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    D+GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|329667428|gb|AEB93376.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           DPC 6026]
          Length = 464

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G + ++E+ IEV          D+ G   +GI ++S L   +M     K+  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|227889900|ref|ZP_04007705.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319569|ref|YP_003293225.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii FI9785]
 gi|227849344|gb|EEJ59430.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397944|emb|CAX66958.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii FI9785]
          Length = 464

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEKKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L  G + ++E+ IEV          D+ G   +GI ++S L   +M     K+  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|153951339|ref|YP_001398382.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166221473|sp|A7H4F2|HSLU_CAMJD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|152938785|gb|ABS43526.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 439

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/447 (43%), Positives = 303/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLTNAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRSENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+   F  ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKAFYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + LDF  ++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELDFDNEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|237752721|ref|ZP_04583201.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376210|gb|EEO26301.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 440

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 196/450 (43%), Positives = 301/450 (66%), Gaps = 29/450 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS LD YIIGQ+DAK+ VAIALRNR+RR QLP +++DE+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVSYLDEYIIGQKDAKKIVAIALRNRYRRLQLPKEIQDEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+++E    E R ++
Sbjct: 61  TEIARRMAKIMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLIKE----EHRSKS 116

Query: 127 SINAEERILDALV-------GKTATSNTREVF-------RKKLRDGEISDKEIDIEVADT 172
           + + E+ +LD +V        K A+    E +       R+K+ +GE+   +I++EV   
Sbjct: 117 TQDIEKYVLDKIVEKLIPPLPKGASEQKIEEYEKTVSKMRQKVLNGEMDHLKIEVEVPKK 176

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDE-SDRLIDM 230
           + +I + ++P   +     + E  +KV  +  K   +  V  K   EL++ E S+ L+D+
Sbjct: 177 TFEIEDGNMPAEFA----KVQETIAKVFIASPKDSPKKEVTIKEAKELLKVEASEALLDL 232

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK 287
           D +  + ++  E+ GI+F+DE DK+    SGNG      S+EGVQRDLLP+VEGS V+TK
Sbjct: 233 DAIKHEGLKRAESSGIIFIDEIDKVAV--SGNGSQRQDPSKEGVQRDLLPIVEGSVVNTK 290

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YGSI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ 
Sbjct: 291 YGSIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELDSLDEEALYKILTQTKNSILR 350

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+  E + L F++++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + 
Sbjct: 351 QYEALLGVEEVRLSFSDEAIRALAHYSQVANEKTEDIGARRLHTVVEQVIEEISFEAENY 410

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + V I    V+  +    +++D+  +IL
Sbjct: 411 KGQDVEITEVLVKEKLESLVADSDIARYIL 440


>gi|156097158|ref|XP_001614612.1| ATP-dependent heat shock protein [Plasmodium vivax SaI-1]
 gi|148803486|gb|EDL44885.1| ATP-dependent heat shock protein, putative [Plasmodium vivax]
          Length = 824

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 287/437 (65%), Gaps = 9/437 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D++ +++PKNIL++GPTGVGKT 
Sbjct: 389 PHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMKKDIIPKNILMIGPTGVGKTE 448

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA  
Sbjct: 449 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQE 508

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDIPGGAS 186
             E  IL +L+G       + ++RK L+DG + DK + I++ +  ++   SN  +     
Sbjct: 509 TVENIILYSLLGNIKEE-EKNIWRKYLKDGSLDDKVVSIDIPNYVNNNIFSNDSVENAVK 567

Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             + N   + S K++     K   K  M++++   +L++ E D  ++ D + + +I  VE
Sbjct: 568 EALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVE 627

Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             GIVF+DE DKI ++   S NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILFIA
Sbjct: 628 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 687

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF   +P D+L E+QGR PV V+L SL   DF  ILT T +NL+ Q   L+KTEGI L
Sbjct: 688 SGAFQRVKPNDMLNELQGRLPVHVNLSSLTIKDFIEILTKTHNNLLQQNIALLKTEGIDL 747

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   KT+VID E V+
Sbjct: 748 QFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDREKVK 807

Query: 421 LHIGDFPSETDMYHFIL 437
             +  F  + D+  +I+
Sbjct: 808 KSLEGFIKQFDLKKYII 824


>gi|227893509|ref|ZP_04011314.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|227864679|gb|EEJ72100.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
          Length = 466

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/467 (41%), Positives = 291/467 (62%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATSN------------------------------TREV------F 151
             A ++++  L       N                              T EV       
Sbjct: 125 KEANKQLVRLLAPGVKRENRENQMQQMQDMMSMLMGGGNNQNNNDQEEVTDEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVKEAREVLIQEESRKMVDYDTIYQRAIERTQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KEDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIIMNKDLTKFIL 466


>gi|226321613|ref|ZP_03797139.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           Bol26]
 gi|226232802|gb|EEH31555.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           Bol26]
          Length = 448

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|218249642|ref|YP_002374818.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           ZS7]
 gi|218164830|gb|ACK74891.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           ZS7]
          Length = 448

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|15594640|ref|NP_212429.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia
           burgdorferi B31]
 gi|2688171|gb|AAC66653.1| heat shock protein (hslU) [Borrelia burgdorferi B31]
          Length = 455

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 18  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 77

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 78  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 137

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 138 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 196

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 197 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 254

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 255 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 312

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 313 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 372

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 373 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 432

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 433 INLDYVNKKI-QINEQKDLNYYII 455


>gi|205355512|ref|ZP_03222283.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346746|gb|EDZ33378.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 439

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESAIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + LDF +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|195941351|ref|ZP_03086733.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi
           80a]
 gi|216264308|ref|ZP_03436300.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           156a]
 gi|221217633|ref|ZP_03589101.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           72a]
 gi|223888752|ref|ZP_03623343.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           64b]
 gi|224533194|ref|ZP_03673794.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           WI91-23]
 gi|224533702|ref|ZP_03674290.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           CA-11.2a]
 gi|225549073|ref|ZP_03770048.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           94a]
 gi|225550095|ref|ZP_03771055.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           118a]
 gi|226320596|ref|ZP_03796156.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           29805]
 gi|3023975|sp|Q44772|HSLU_BORBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|1165279|gb|AAA85618.1| HsLU [Borrelia burgdorferi]
 gi|215980781|gb|EEC21588.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           156a]
 gi|221192310|gb|EEE18529.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           72a]
 gi|223885568|gb|EEF56667.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           64b]
 gi|224511921|gb|EEF82322.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           WI91-23]
 gi|224512995|gb|EEF83358.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           CA-11.2a]
 gi|225369207|gb|EEG98660.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           118a]
 gi|225370299|gb|EEG99737.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           94a]
 gi|226234015|gb|EEH32736.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           29805]
 gi|312149103|gb|ADQ29174.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           N40]
          Length = 448

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|312148448|gb|ADQ31107.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           JD1]
          Length = 448

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|57167683|ref|ZP_00366823.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli
           RM2228]
 gi|305433190|ref|ZP_07402346.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           coli JV20]
 gi|57020805|gb|EAL57469.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli
           RM2228]
 gi|304443891|gb|EFM36548.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           coli JV20]
          Length = 439

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 304/447 (68%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++ +  
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESVIEIEISQSMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAAEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGSSV TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY+
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYE 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASKANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|58337282|ref|YP_193867.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus NCFM]
 gi|81311472|sp|Q5FKD8|HSLU_LACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|58254599|gb|AAV42836.1| ATP dependant protease, ATP binding unit, heatshock protein
           [Lactobacillus acidophilus NCFM]
          Length = 466

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QLP  ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INA--------------EER---------ILDALVG-------------KTATSNTREVF 151
             A              E+R         ++  L+G                  N R   
Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL    + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +L+D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIMNKDLTKFIL 466


>gi|227903868|ref|ZP_04021673.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|227868259|gb|EEJ75680.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 466

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QLP  ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INA--------------EER---------ILDALVG-------------KTATSNTREVF 151
             A              E+R         ++  L+G                  N R   
Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL    + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +L+D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIVNKDLTKFIL 466


>gi|254556718|ref|YP_003063135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|254045645|gb|ACT62438.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
          Length = 472

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 298/469 (63%), Gaps = 36/469 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P++IV+ LD Y+IGQ  AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGV
Sbjct: 4   INKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++     VR 
Sbjct: 64  GKTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRA 123

Query: 125 QASINAEERILDALV---GKTATSNTREV-----FRKKLRDGEI------SDKEIDIEVA 170
           QA   A++R++  LV    K A +N  E         ++++G+       S++E+  EV 
Sbjct: 124 QAVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVR 183

Query: 171 DTSSDISN---------------FDIPGGASVGILNLSELFSKVMGSG-----RKKKIR- 209
           +    +++                D P  A+ G  N+       +G        KK+I+ 
Sbjct: 184 NQRLSVADQLKTGRLENSEVTIEMDDPQQAAAGNNNMLGQMGIDLGDSLGALMPKKRIQR 243

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            M V +    L+R+ES++L++   ++ D+I   EN GI+F+DE DKI          VSR
Sbjct: 244 TMPVSEAREILVREESEKLVNNADIYHDAIVCAENTGIIFIDEIDKITKGGQQGSGEVSR 303

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS +STKYG INTDHILFIASGAF  S+P+DL+ E+QGRFP+RV L  
Sbjct: 304 EGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVELDD 363

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+K DF  ILT+ ++ LI QY  L+ T+ I + FT ++I+A+A +A  +N    +IGARR
Sbjct: 364 LSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGARR 423

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LE++ +   D++   V I   YV   IG+   + D+  +IL
Sbjct: 424 LHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472


>gi|225552138|ref|ZP_03773078.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1]
 gi|225371136|gb|EEH00566.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1]
          Length = 448

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+Y+IGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYVIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|28378504|ref|NP_785396.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           WCFS1]
 gi|300767450|ref|ZP_07077362.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180661|ref|YP_003924789.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|32129621|sp|Q88W26|HSLU_LACPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28271340|emb|CAD64245.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           plantarum WCFS1]
 gi|300495269|gb|EFK30425.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046152|gb|ADN98695.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 472

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 298/469 (63%), Gaps = 36/469 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P++IV+ LD Y+IGQ  AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGV
Sbjct: 4   INKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++     VR 
Sbjct: 64  GKTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRA 123

Query: 125 QASINAEERILDALV---GKTATSNTREV-----FRKKLRDGEI------SDKEIDIEVA 170
           QA   A++R++  LV    K A +N  E         ++++G+       S++E+  EV 
Sbjct: 124 QAVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVR 183

Query: 171 DTSSDISN---------------FDIPGGASVGILNLSELFSKVMGSG-----RKKKIR- 209
           +    +++                D P  A+ G  N+       +G        KK+I+ 
Sbjct: 184 NQRLSVADQLKTGRLENSEVTIEMDDPQQAAAGNNNMLGQMGIDLGDSLGALMPKKRIQR 243

Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            M V +    L+R+ES++L++   ++ D+I   EN GI+F+DE DKI          VSR
Sbjct: 244 TMPVSEAREILVREESEKLVNNADIYHDAIVRAENTGIIFIDEIDKITKGGQQGSGEVSR 303

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS +STKYG INTDHILFIASGAF  S+P+DL+ E+QGRFP+RV L  
Sbjct: 304 EGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVELDD 363

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+K DF  ILT+ ++ LI QY  L+ T+ I + FT ++I+A+A +A  +N    +IGARR
Sbjct: 364 LSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGARR 423

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LE++ +   D++   V I   YV   IG+   + D+  +IL
Sbjct: 424 LHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472


>gi|283956076|ref|ZP_06373563.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792396|gb|EFC31178.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 439

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + LDF +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTEKLELDFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|32265808|ref|NP_859840.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           hepaticus ATCC 51449]
 gi|32261857|gb|AAP76906.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter hepaticus
           ATCC 51449]
          Length = 444

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/446 (43%), Positives = 288/446 (64%), Gaps = 19/446 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV  LD YIIGQ DAK+AVAIALRNR+RR +L  +++DE+ PKNIL++G TGVG
Sbjct: 4   NMTPKQIVEYLDGYIIGQNDAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGSTGVG 63

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  ++N+V    R   R Q
Sbjct: 64  KTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQ--RAQ 121

Query: 126 ASIN------AEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTS 173
           A IN        +++L  L    + +   E        ++++  GE+ D  I+IE+  + 
Sbjct: 122 AQINDYIIEKITQKLLPPLPSGVSEAKKSEYDMSFTKMKQRVIKGEVDDLMIEIEI--SK 179

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDT 232
             IS F+        ++ + E   KV+   + K K  MSV++    L  +  + ++D ++
Sbjct: 180 KPISQFN-DENMPPDMIKVQESIFKVLNVSQDKIKKEMSVKEAKEALAYEAIESVLDAES 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +  + ++  +  G++F+DE DK+ V    G+    S+EGVQRDLLP+VEGS V+TKYG I
Sbjct: 239 IRAEGLRRAQENGVIFIDEIDKVAVGSKDGSRQDPSKEGVQRDLLPIVEGSVVNTKYGQI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L  L++     ILT T+S+L+ QY+ 
Sbjct: 299 KTDYILFIAAGAFHLSKPSDLIPELQGRFPLRVELSMLDEESLYQILTQTKSSLLRQYQL 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE I L+F++++I  LA ++ N N    DIGARRL T +ERVLEDISF     + K 
Sbjct: 359 LLDTEDIRLEFSDEAIRELARLSHNANQRTEDIGARRLHTTIERVLEDISFDVDTYKGKE 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V I  + VR  +GD     D+  +IL
Sbjct: 419 VEITGDMVRERLGDLVENIDLARYIL 444


>gi|284925920|gb|ADC28272.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 439

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 303/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|57236972|ref|YP_178773.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           RM1221]
 gi|62286707|sp|Q5HVB2|HSLU_CAMJR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|57165776|gb|AAW34555.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           RM1221]
 gi|315058077|gb|ADT72406.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 439

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 301/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G + +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|86151777|ref|ZP_01069991.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841406|gb|EAQ58654.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 439

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNHQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|227524591|ref|ZP_03954640.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088266|gb|EEI23578.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
          Length = 481

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRNDAE 138

Query: 128 INAEERILDALV------------------------GKTATSN------------TREVF 151
             A  +++  LV                        G+  + N             R   
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209
             KLR G + ++E++IE+ D S   S  +      +GI +L++  S +M    KKKI+  
Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIKRT 253

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VSRE
Sbjct: 254 VPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSRE 313

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L  L
Sbjct: 314 GVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDL 373

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGARRL
Sbjct: 374 SKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRL 433

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 434 HTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481


>gi|315453297|ref|YP_004073567.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179]
 gi|315132349|emb|CBY82977.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 191/447 (42%), Positives = 285/447 (63%), Gaps = 17/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P+EIV  LD YII Q+DAK+ +AIALRNRWRR QLP +L++E+ PKNIL++G T
Sbjct: 1   MKLEMTPQEIVDYLDDYIIEQKDAKKMIAIALRNRWRRLQLPKELQEEVTPKNILMIGST 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV  +IN+V    ++  
Sbjct: 61  GVGKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVATSINLVENEHKERN 120

Query: 123 REQASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           RE+      ERI   L+           K   ++  E  ++K++ G +   +I+IE+   
Sbjct: 121 REKIEELIVERIAKKLLPALPNGVSETKKEEYASNFEKTKEKIKSGALDHVQIEIELRKK 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
             +  +F++P      I+ + E   KV+   G K    MS+++    L  D S  ++DM+
Sbjct: 181 HLE-GDFNVPPE----IIKVQESLIKVLNREGEKVSKEMSIKEAKEALRHDVSQTILDME 235

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V  + ++     G++F+DE DKI V    G+    S+EGVQRDLLP+VEGS ++TKYG 
Sbjct: 236 RVQAEGVERAMQSGVIFIDEIDKIAVGVKEGSRQDPSKEGVQRDLLPIVEGSVINTKYGP 295

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAF +S+P+DL+PE+QGRFP+RV L+SL++     ILT T+S++I QY+
Sbjct: 296 VATDHILFIAAGAFQLSKPSDLIPELQGRFPLRVELESLSEEIMFAILTRTKSSIIKQYQ 355

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  EG+ L F  +++  LA ++   N    DIGARRL T +E+VLED+SF+AS  + +
Sbjct: 356 ALLSVEGVELVFDPEALRELARLSYLANQNAEDIGARRLHTTIEKVLEDLSFNASSYKGQ 415

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V+I  E V   + +     D   FIL
Sbjct: 416 QVLITKENVAKKLENLVDNVDRARFIL 442


>gi|51598555|ref|YP_072743.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia garinii
           PBi]
 gi|51573126|gb|AAU07151.1| heat shock protein [Borrelia garinii PBi]
          Length = 448

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 190/444 (42%), Positives = 301/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVLELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYNTVRDDALV 130

Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP+++GS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIMKGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VMERVL D+ F     + K   
Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|260101611|ref|ZP_05751848.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075]
 gi|260084574|gb|EEW68694.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075]
          Length = 467

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALV------------------------GKTATS-------------NTREV 150
             A ++++  L                         G    +             N R  
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184

Query: 151 FRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +KL  G + D+E+ IEV     ++  +  +          LS++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|86149872|ref|ZP_01068101.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86153464|ref|ZP_01071668.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88597123|ref|ZP_01100359.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562307|ref|YP_002344086.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315124171|ref|YP_004066175.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|11133091|sp|Q9PHL0|HSLU_CAMJE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|85839690|gb|EAQ56950.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843190|gb|EAQ60401.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88190812|gb|EAQ94785.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360013|emb|CAL34803.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315017893|gb|ADT65986.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315926779|gb|EFV06153.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 439

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|66805881|ref|XP_636662.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4]
 gi|60465050|gb|EAL63156.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4]
          Length = 694

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 293/445 (65%), Gaps = 30/445 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PR+IVS LD Y+IGQ DAKRA++IALRNRWRR++L A ++ ++ PKNIL++GPTGVG
Sbjct: 267 NLLPRDIVSGLDEYVIGQSDAKRAISIALRNRWRRKRLDASMKPDVYPKNILMIGPTGVG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA++  APF+KVE TK+TE+G+ G +V+ IIRDL++ +I+ ++    +  +  
Sbjct: 327 KTELARRLAKIINAPFVKVEATKYTEVGFHGPDVDTIIRDLIEASISNIKTKIANSHKAS 386

Query: 126 ASINAEERILDALVG--KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              + E+ ++ +L+G     ++ T E   KK R+G++   EI+IEV+  S          
Sbjct: 387 IEADVEKNVISSLIGLQNDLSAITIEELLKKYREGQLDSVEIEIEVSSDSK--------- 437

Query: 184 GASVGIL---NLSELFSKVMGSGRK-KKIRMS-VQKCYPELMRDESDRLIDMDTVHRD-- 236
             S+G     N+++L S +     K KK+ ++  ++ + +  RD       + TV +D  
Sbjct: 438 -GSLGQAYDENIAKLLSAIDKQPSKIKKVTIAEAKEIFEKQYRD-------LYTVSQDVT 489

Query: 237 --SIQMVENYGIVFLDEFDKIV-ARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             +IQ  E  GIVFLDE DKI  +R+S  NG   S +GVQRDLLP+VEG  VSTKYG I+
Sbjct: 490 KLAIQSAEQNGIVFLDEIDKICTSRESIKNGGDASTDGVQRDLLPIVEGCMVSTKYGQID 549

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T  ILFIASGAFH ++P+DL+ E+QGR P+RV LK L + DF  ILT+ ++N I Q K L
Sbjct: 550 TSRILFIASGAFHNTKPSDLISELQGRLPIRVELKPLEQKDFYKILTEPKNNQIQQQKAL 609

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE I L+FT+D++  +A +A   N+ V ++GARRL  ++ER++EDISF+    + KTV
Sbjct: 610 LKTEDIQLEFTDDALLEVAKIAFEANAQVQNLGARRLHGIIERIVEDISFNCDIHKGKTV 669

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           V+D   +R H+ +   +TD+  +I+
Sbjct: 670 VLDTPDIRKHLSELLFKTDLSKYII 694


>gi|229824240|ref|ZP_04450309.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271]
 gi|229786594|gb|EEP22708.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271]
          Length = 485

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 299/467 (64%), Gaps = 42/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR +V+EL++YIIGQ +AKRA+AIALRNR RR +L   ++ E+ PKNIL++GPTGVG
Sbjct: 26  QLTPRYVVNELNKYIIGQDEAKRAIAIALRNRLRRLKLEPAMQAEVKPKNILMIGPTGVG 85

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +A APF+KVE TK+TEIGYVGR+VE ++RDLV+ +I +V++ +  EVRE+
Sbjct: 86  KTEIARRLAEIANAPFVKVEATKYTEIGYVGRDVEAMVRDLVEASIRMVKKIKHQEVREE 145

Query: 126 ASINAEERILDALV-------GKTATSN--------------------------TREVFR 152
           A   A  R+  AL         + A  N                          +R   +
Sbjct: 146 AYERALTRLAKALKPGIKQEKKQQAQPNDFMAMLQQMTQSQEEPQEVVTDDIKVSRRQIK 205

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++LR G I+DKE+ IE+ +    ++N +        +  + ++ S+      KKKI+ SV
Sbjct: 206 EQLRQGLINDKEVTIELEEKKLQLNNLN------PMMEQMMDVQSEFQNLRPKKKIKRSV 259

Query: 213 --QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
             ++    L  +ESD L++ D +++ ++++ +N GI+F+DE DKI A  S +G  VSR+G
Sbjct: 260 TVKEALELLTEEESDHLVNQDDINQQALELAQNSGIIFIDEIDKI-ATSSNHGGEVSRQG 318

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS + TKYG I+TDHILFI SGAFHV++P+DL+PE+QGRFP+RV L  L 
Sbjct: 319 VQRDILPIVEGSDIQTKYGIISTDHILFIGSGAFHVAKPSDLIPELQGRFPIRVQLTDLK 378

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DFR IL +    ++ QY+ ++ TEG+ + FT+ +ID +A+ AV LN +  +IGARRL 
Sbjct: 379 VDDFRRILQEPAHAILHQYQAMLATEGVEVIFTDSAIDKMAEYAVLLNESTDNIGARRLH 438

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E VLE++ + A+D+    + I+  YV   +       D+ H+IL
Sbjct: 439 TIVETVLEELLYEAADMNMGRIEINGAYVSQRLDKIVESPDLSHYIL 485


>gi|1196314|gb|AAB51406.1| heat shock response protein [Borrelia burgdorferi]
 gi|1234880|emb|CAA65468.1| heat shock protein [Borrelia burgdorferi]
          Length = 448

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 192/444 (43%), Positives = 299/444 (67%), Gaps = 21/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ + +N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIRVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             EERI+++L   +            A    +E  RKKLR GE+ D  I+I+++ +    
Sbjct: 131 KTEERIVESLFKGSDNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189

Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S  +I  G +   +++      ++G+   RKKK  + ++K    ++ +E ++L+D + + 
Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +   VEN GI+F+DE DKI A++ SGN   VSREGVQRD+LP++EGS V+TKYG ++T
Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + 
Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   
Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448


>gi|121612676|ref|YP_001000362.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005308|ref|ZP_02271066.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|166221474|sp|A1VZ21|HSLU_CAMJJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|87249356|gb|EAQ72316.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 439

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 193/447 (43%), Positives = 301/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G + +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|227510440|ref|ZP_03940489.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190092|gb|EEI70159.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 481

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 196/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138

Query: 128 INAEERILDALV------------------------GKTATSN------------TREVF 151
             A  +++  LV                        G+  + N             R   
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209
             KLR G + ++E++IE+ D S   S  +      +GI +L++  S +M    KKKI+  
Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIKRT 253

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VSRE
Sbjct: 254 VPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSRE 313

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L  L
Sbjct: 314 GVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDL 373

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGARRL
Sbjct: 374 SKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRL 433

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 434 HTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481


>gi|323466638|gb|ADX70325.1| ATP-dependent protease ATPase subunit HslU [Lactobacillus
           helveticus H10]
          Length = 467

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 292/468 (62%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALV-----------------------GKTATSN--------TREVFRK--- 153
             A ++++  L                        G    +N        T EV ++   
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRKERMD 184

Query: 154 ---KLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|227513449|ref|ZP_03943498.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227083322|gb|EEI18634.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
          Length = 483

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/470 (41%), Positives = 289/470 (61%), Gaps = 45/470 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138

Query: 128 INAEERILDALV------------------------GKTATSN--------------TRE 149
             A  +++  LV                        G+  + N               R 
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENENDDQEEVTDDIREKRM 198

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               KLR G + ++E++IE+ D S   S  +      +GI +L++  S +M    KKKI+
Sbjct: 199 SVSDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIK 253

Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             + V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VS
Sbjct: 254 RTVPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVS 313

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L 
Sbjct: 314 REGVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELD 373

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L+K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGAR
Sbjct: 374 DLSKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGAR 433

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 434 RLHTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 483


>gi|157414938|ref|YP_001482194.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|172047095|sp|A8FL80|HSLU_CAMJ8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157385902|gb|ABV52217.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747577|gb|ADN90847.1| ATP-dependent hsl protease ATP-binding subunit hslU [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931859|gb|EFV10814.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 439

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 302/447 (67%), Gaps = 22/447 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS++ TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNIQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D + V   +GD     D+  +IL
Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439


>gi|254459110|ref|ZP_05072533.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales
           bacterium GD 1]
 gi|207084381|gb|EDZ61670.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales
           bacterium GD 1]
          Length = 442

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/446 (42%), Positives = 298/446 (66%), Gaps = 17/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LDRY+I Q+DAK+ +A+ALR R+RR QL  +L++E+MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDRYVISQKDAKKTIALALRTRYRRMQLSQELQNEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I+IV++ + +  +E
Sbjct: 61  GKTEISRRLAKMLSVPFIKVEASKYTEVGFVGRDVESMIRDLVVASISIVKKEKEEANKE 120

Query: 125 QASINAEERILDALVGKT---ATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174
           +       +I++ L+      A+ + ++ +++       ++ +GE+ D+ I+++      
Sbjct: 121 KIDNYILNKIVEKLLPPLPDGASESKKDDYQRLLGAMEERVINGEMDDRVIELQFDKVHL 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232
           + ++ ++P   +     + E FSK+  +  K+  K  ++V+     L  + S +L+DM  
Sbjct: 181 EFNDTNLPPEMA----KVQESFSKIFETMNKEDNKKEVTVKDAKSILRVEASHKLLDMTN 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291
           ++ ++++  E+ GI+FLDE DKI   +   G    S+EGVQRDLLP+VEGSSV+TKYG I
Sbjct: 237 INTEALKRAEDGGIIFLDEIDKIAVSEKSQGRNDPSKEGVQRDLLPIVEGSSVTTKYGVI 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           NTDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +     ILT TE++L+ QY+ 
Sbjct: 297 NTDHILFIAAGAFHITKPSDLIPELQGRFPLRVELESLTEDTLYKILTQTENSLLKQYEA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+  EG+ L F +++I A+A ++   N    DIGARRL TV+ERVLE+ISF A + + + 
Sbjct: 357 LLSVEGVKLIFEDEAIKAIAKLSHKANEMTEDIGARRLHTVLERVLEEISFEADEHRGQE 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++ +E V   +       D+  +IL
Sbjct: 417 FIVKSELVHEKLDLVVENDDLSRYIL 442


>gi|161507476|ref|YP_001577430.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           helveticus DPC 4571]
 gi|172048284|sp|A8YV51|HSLU_LACH4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|112148388|gb|ABI13541.1| ATP-dependent protease Hs IVU ATPase subunit-like protein
           [Lactobacillus helveticus CNRZ32]
 gi|160348465|gb|ABX27139.1| ATP dependant protease ATP-binding subunit [Lactobacillus
           helveticus DPC 4571]
          Length = 467

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 289/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALV------------------------GKTATS-------------NTREV 150
             A ++++  L                         G    +             N R  
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184

Query: 151 FRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|328875240|gb|EGG23605.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
          Length = 1249

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/433 (43%), Positives = 289/433 (66%), Gaps = 14/433 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD+YIIGQ +AKRAV+IALRNRWRR++L A ++ ++ PKNIL++GPTGVGK
Sbjct: 187 LTPKEIVSELDKYIIGQAEAKRAVSIALRNRWRRKRLDASIKQDVFPKNILMIGPTGVGK 246

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA +  APFIKVE TK+TE+G+ G +V+ IIRDL++V+I+ +++   +  +E  
Sbjct: 247 TEIARRLANIVNAPFIKVEATKYTEVGFHGPDVDSIIRDLIEVSIHNIKQKIANLHKETI 306

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD----IP 182
            +  E+ I+ +LVG    + + E   K  R+  + + +I+++V  ++      D    IP
Sbjct: 307 DMEIEKEIISSLVGPDFLNRSYEDLVKLYREKALENIQIELDVPSSTDTKLQLDDENLIP 366

Query: 183 GGASVGILNLSELFS-KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                    +S+LF+ +V  S + KK  ++V +    L + + ++LI    V + +IQ  
Sbjct: 367 -------FAVSKLFNVQVDKSNQIKKRIVTVSEARTILEKIQKEKLIVQQDVTKLAIQSA 419

Query: 242 ENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           E  GIVFLDE DKI     ++  G   S +GVQRDLLP++EG +V+TKYG I+T  ILFI
Sbjct: 420 EQNGIVFLDEIDKICTPKENTHRGGDASTDGVQRDLLPIIEGCNVNTKYGMIDTSRILFI 479

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH S+P+DL+ E+QGR P+RV LK L+++DF  ILT+ ++N I Q K L++TE I 
Sbjct: 480 ASGAFHSSKPSDLISELQGRLPIRVELKPLDQNDFYRILTEPKNNQIEQQKALLQTEDIT 539

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT DS+  ++ +A + N+ V +IGARRL  ++E+++E+ SF+  D + KTV I  + V
Sbjct: 540 LEFTIDSLREVSRIAFDANAQVQNIGARRLHGIIEKIVEEYSFNCDDHKGKTVTITEDSV 599

Query: 420 RLHIGDFPSETDM 432
           + H+     +TD 
Sbjct: 600 KKHLSQLLFKTDF 612


>gi|315639032|ref|ZP_07894202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           upsaliensis JV21]
 gi|315480944|gb|EFU71578.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           upsaliensis JV21]
          Length = 439

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 298/445 (66%), Gaps = 18/445 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR +L  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMKLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E++IL+ L+           +    N+ E  R KL++G++ +  I++E++    
Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQNSLEKMRTKLKNGDLDESVIELEISQNMF 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233
           D +N ++P   S       +   KV+G G KK  +    K     ++ E SD+++D + +
Sbjct: 181 D-TNPNLPPEMSA-----MQDMVKVIGVGSKKVKKEMKIKDAKNTLKSEASDKILDTENI 234

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++ VEN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGSSV TK G + 
Sbjct: 235 KSEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVK 294

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY EL
Sbjct: 295 TDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYVEL 354

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K+ 
Sbjct: 355 LKTEDLSLEFDDEAIRQIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKSF 414

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           V+D + V   +       D+  +IL
Sbjct: 415 VVDKKMVEEKLSSIVENKDLARYIL 439


>gi|152993266|ref|YP_001358987.1| ATP-dependent protease ATP-binding subunit HslU [Sulfurovum sp.
           NBC37-1]
 gi|151425127|dbj|BAF72630.1| ATP-dependent protease HslVU, ATPase subunit HslU [Sulfurovum sp.
           NBC37-1]
          Length = 442

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/446 (42%), Positives = 282/446 (63%), Gaps = 20/446 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV  LD Y+IGQ DAK+ +A+ALRNR+RR QL  +++ ++ PKNIL++G TGVG
Sbjct: 3   NLTPKEIVVHLDNYVIGQDDAKKTIAVALRNRYRRMQLDHEMQQDVTPKNILMIGSTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++   PFIKVE +K+TE+G+VGR+VE +IRDL   A+ IVRES  ++  E+
Sbjct: 63  KTEIARRLAKMMNLPFIKVEASKYTEVGFVGRDVESMIRDLAATAMGIVRESENEKNAEK 122

Query: 126 ASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSSD 175
                E +I++ L+       + +            ++K   GE+   +I + + +    
Sbjct: 123 IENYIENKIIEKLLPPLPAGASEQKQAEYDASFARMQEKFAKGELDHLKIKVTMPN---- 178

Query: 176 ISNFDIPG-GASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232
             N  +P  G    ++ + E   KV+G   KK  +  ++V++    L ++ S+ L+D + 
Sbjct: 179 --NPQMPEEGLPPQMIQVQESIVKVLGGMGKKGPEKEVTVKEAKKILAQEASETLLDEEQ 236

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +++ VE  GIVFLDE DKI    +  G    S+EGVQRDLLP+VEGS+V TK G +
Sbjct: 237 LKELALEKVEKGGIVFLDEVDKIAVPSNSQGRQDPSKEGVQRDLLPIVEGSTVVTKLGQV 296

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SLN+     ILT+ + +L+ QY+ 
Sbjct: 297 KTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLNEEALYRILTEPKHSLVKQYQA 356

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LM  EG+ L F E ++ A+A  ++  N    DIGARRL TVME++LE+ISF+A +   + 
Sbjct: 357 LMAVEGVELVFEESALHAIAHYSLMANEKTEDIGARRLHTVMEKILEEISFTADEHVGEK 416

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID   V+  IG    + D   +IL
Sbjct: 417 VTIDEALVKEKIGQVVEDEDTTRYIL 442


>gi|323339876|ref|ZP_08080145.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           ruminis ATCC 25644]
 gi|323092749|gb|EFZ35352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           ruminis ATCC 25644]
          Length = 491

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/475 (41%), Positives = 300/475 (63%), Gaps = 54/475 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV+ELD+Y++GQ  AK+AVAIALRNR+RR QL  D+++E+ PKN++++GPTGVGKT
Sbjct: 26  TPKEIVAELDKYVVGQAKAKKAVAIALRNRYRRMQLSEDMQEEITPKNMMMIGPTGVGKT 85

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV+V+  +  +     VR +A 
Sbjct: 86  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVEVSYKMEEDEMFKNVRAEAV 145

Query: 128 INAEERILDALV---GKTATSNTREVFRK------------------------------- 153
             A++R++  LV    K    + ++ F K                               
Sbjct: 146 AKADKRLVKLLVPAQKKQEKMSQQQAFSKMMSDLQSGNYANLFNQQEEPEDVTDEIADKR 205

Query: 154 -----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL-----NLSELFSKVMGSG 203
                KLR G + ++EI +++ + SS       P GA+ G+L     +LS+  +++  + 
Sbjct: 206 MSVAEKLRQGYLENEEITLQMDEPSS-------PSGAADGMLGQMGVDLSDALAQI--TP 256

Query: 204 RKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           +KK  R ++V++    L+R+ES +L++   +   +I+  EN GI+F+DE DKI ++   N
Sbjct: 257 KKKITRTVTVKEAREILVREESAKLVNSWDIADAAIKRAENTGIIFIDEIDKITSKSKQN 316

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
              VSREGVQRD+LP+VEGSS+ TKYG I TDHILFIASGAF  S+P+DL+ E+QGRFP+
Sbjct: 317 SGEVSREGVQRDILPIVEGSSIKTKYGMIKTDHILFIASGAFAESKPSDLIAELQGRFPI 376

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L  L K DF  ILT+ ++ L+ QY  L+ T+ + + FT+++I+ +A++A  +N    
Sbjct: 377 RVELDDLQKEDFVRILTEPKNALVKQYIALIGTDNVSVTFTKEAIEKIAEIACKVNHETE 436

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++E++LED+ F   D+    + I   YV   +G    + D+  +IL
Sbjct: 437 NIGARRLHTILEKLLEDLLFEGPDMHMGEITITEAYVEDKVGSIVDDRDLSQYIL 491


>gi|260583820|ref|ZP_05851568.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158446|gb|EEW93514.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella
           elegans ATCC 700633]
          Length = 468

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/475 (42%), Positives = 308/475 (64%), Gaps = 45/475 (9%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    + +PRE+V ELD++I+GQ  AKRA+A+ALRNR+RR  L  +++ E+ PKN+L++G
Sbjct: 1   MNSKISKTPREVVQELDQFIVGQASAKRALAVALRNRYRRLLLDEEMQKEVTPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT ++RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI+IV++ +++
Sbjct: 61  PTGVGKTELARRLAKLVDAPFVKVEATKFTEVGYVGRDVESMVRDLVENAISIVQKQKQE 120

Query: 121 EVREQASINAEERILDAL----VGKTAT-------------------------------- 144
           +VR QA   A  ++   L    + K A                                 
Sbjct: 121 DVRPQAYDKAVRKLAKILKPGIMKKVANPQQDSLMNLFQSMGLPKTDLPQEEKEEVTEEI 180

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV--MGS 202
           + +R    ++LR+G + ++E+ IEV +    ++      G S G+  + ++ S +  M  
Sbjct: 181 AASRREIEQQLRNGLLKNQEVTIEVEEKPLRMA------GNSNGMEQMMQIQSMLDQMTP 234

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            ++ K  +SV++    L   E+D+L++ D VH +++++ E  GI+F+DE DKI A+   N
Sbjct: 235 KKRSKRTVSVEEALDILTEQEADQLVNKDDVHAEALKLAETSGIIFIDEIDKIAAK-GHN 293

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
           G  VSREGVQRD+LP+VEGS V TKYG+I TDHILFIASGAFHV++P+DL+PE+QGRFP+
Sbjct: 294 GGEVSREGVQRDILPIVEGSQVQTKYGAIQTDHILFIASGAFHVAKPSDLMPELQGRFPI 353

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L+ L+K DF  ILT+ ++ L+ QYK L+ TE + + FT++++ ALA  A  +NS + 
Sbjct: 354 RVELQDLSKEDFERILTEPKNALLKQYKALLATENVEVIFTKEAVSALARTAFEVNSNME 413

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++E +LE++ F A  +Q  ++ I  +YV   +    ++ D+  +IL
Sbjct: 414 NIGARRLHTILETLLEELLFEAPQMQMGSIQITEQYVDSKLNTITADRDLSRYIL 468


>gi|257468124|ref|ZP_05632220.1| ATP-dependent protease ATP-binding subunit HslU [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062409|ref|ZP_07926894.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185]
 gi|313688085|gb|EFS24920.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185]
          Length = 438

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 289/437 (66%), Gaps = 9/437 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+GPTGVG
Sbjct: 5   LTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRREITPKNIILIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL  +    ++E + +E+RE+
Sbjct: 65  KTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNELREE 124

Query: 126 ASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           A   A E+    LV    + N  E  +  + + +G+  D E++IE      D+   ++  
Sbjct: 125 AYETALEKAA-KLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIERTKRDLDLPIIEVVS 183

Query: 184 GASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G+      +  +  +VM   SG+ KK+  +V+     +M +E ++ +D+D+++ + I  V
Sbjct: 184 GSD-DTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMMDEEVEKKLDLDSLNEEVIDNV 242

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           EN GI+F+DE DKI  RD G G G VSR+GVQRD+LP+VEGS+V TK+G + TDHILFIA
Sbjct: 243 ENNGIIFIDEIDKIAERD-GVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILFIA 301

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAF  S P+DL+PE+QGRFP+RV LK+L K DF  ILT+ E NL+ QY  ++ T+ + L
Sbjct: 302 AGAFTQSSPSDLMPELQGRFPIRVKLKNLEKEDFVKILTEVEYNLLDQYTAMLATDNVEL 361

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+ +I+ +AD+    N  V +IGARRL  V+E +L ++ + A   ++K V IDA +V+
Sbjct: 362 TFTKGAIEKIADITAAANEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANFVK 421

Query: 421 LHIGDFPSETDMYHFIL 437
                   E ++  +IL
Sbjct: 422 KVFKKENEEENLDKYIL 438


>gi|253583585|ref|ZP_04860783.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725]
 gi|251834157|gb|EES62720.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725]
          Length = 438

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 290/437 (66%), Gaps = 9/437 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+GPTGVG
Sbjct: 5   LTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRKEITPKNIILMGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL  +    ++E + +E+RE+
Sbjct: 65  KTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNELREE 124

Query: 126 ASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           A   A E+    LV    + N  E  +  + + +G+  D E++IE      D+   ++  
Sbjct: 125 AYETALEKAA-KLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIEKTRKDLDLPIIEVVS 183

Query: 184 GASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G       +  +  +VM   SG+ KK+  +V+     ++ +E ++ +D+D+++ + I+ V
Sbjct: 184 GND-DTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMIDEEVEKKLDLDSLNEEVIENV 242

Query: 242 ENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           EN GI+F+DE DKI  RD G G G VSR+GVQRD+LP+VEGS+V TK+G + TDHILFIA
Sbjct: 243 ENNGIIFIDEIDKIAERD-GVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILFIA 301

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAF  S P+DL+PE+QGRFP+RV LK+L + DF  ILTD E NL+ QY  ++ T+ + L
Sbjct: 302 AGAFTQSSPSDLMPELQGRFPIRVKLKNLEREDFVKILTDVEYNLLDQYTAMLATDNVEL 361

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+ +I+ +AD+   +N  V +IGARRL  V+E +L ++ + A   ++K V IDA +V+
Sbjct: 362 SFTKGAIEKIADITAVMNEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANFVK 421

Query: 421 LHIGDFPSETDMYHFIL 437
                   E ++  +IL
Sbjct: 422 KIFKKENEEENLDKYIL 438


>gi|11133033|sp|Q48735|HSLU_LACLE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 464

 Score =  348 bits (894), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 282/467 (60%), Gaps = 44/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153
             A                         E I   L G   +  T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210
           KL  G + ++E+ IEV                   +  +    S ++G    KKK++  +
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREG
Sbjct: 238 PVSQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL 
Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|260664455|ref|ZP_05865307.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561520|gb|EEX27492.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii SJ-7A-US]
          Length = 460

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 190/463 (41%), Positives = 288/463 (62%), Gaps = 40/463 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAQQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214
            G + D+++ IEV + +  ++      G     +N   L   +M    KKK++  ++V+ 
Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMSDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD
Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAG-QVSREGVQRD 297

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF
Sbjct: 298 ILPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E
Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|238855700|ref|ZP_04645997.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 269-3]
 gi|282932214|ref|ZP_06337661.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|313472145|ref|ZP_07812637.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 1153]
 gi|238831685|gb|EEQ24025.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 269-3]
 gi|239529516|gb|EEQ68517.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 1153]
 gi|281303664|gb|EFA95819.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
          Length = 460

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 190/463 (41%), Positives = 288/463 (62%), Gaps = 40/463 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGFQQAQQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214
            G + D+++ IEV + +  ++      G     +N   L   +M    KKK++  ++V+ 
Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMSDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD
Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAG-QVSREGVQRD 297

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF
Sbjct: 298 ILPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E
Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|291276927|ref|YP_003516699.1| putative heat shock protein [Helicobacter mustelae 12198]
 gi|290964121|emb|CBG39965.1| putative heat shock protein [Helicobacter mustelae 12198]
          Length = 443

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 285/448 (63%), Gaps = 25/448 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREI   LD YIIGQ +AKRA+AIALRNR+RR QL   +R+E+ PKNI+++G TGVG
Sbjct: 5   SMTPREITRHLDEYIIGQDEAKRAIAIALRNRYRRLQLDEKIREEVTPKNIMMIGSTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV  +I++V      E R+ 
Sbjct: 65  KTEIARRMAKMMNLPFVKVEASKYTEVGFVGRDVESMVRDLVSASIHLVE----SECRQS 120

Query: 126 ASINAEERILDALV--------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A    +E IL  +                K   + + E   +K+++G +   +I+IE+  
Sbjct: 121 AQTQIQEYILQKITRILMPPLPDTITQEKKEEYTQSFEKMYQKVKNGAMDHVKIEIEIQK 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDM 230
              +  N   P      ++ + E   KV+   ++  K  M++++    L  + S+R++DM
Sbjct: 181 RLLENDNNMPPE-----LIKVQESIIKVLSKNQEMIKKEMTIKEAKIALQEEASERILDM 235

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           + +  ++++  +  GI+F+DE DK+ V    G+    S+EGVQRDLLP+VEGS V++KYG
Sbjct: 236 EKIKTEALERAQTSGIIFIDEIDKVAVGSRDGSRQDPSKEGVQRDLLPIVEGSMVNSKYG 295

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           +I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT T++++I QY
Sbjct: 296 AIKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELDSLSEEVMYQILTQTKTSIIKQY 355

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + L F +D++  LA ++ + N    DIGARRL T MERVLE+ISF A     
Sbjct: 356 QALLSTEDVNLVFEDDALRELARLSYHANQKNEDIGARRLHTTMERVLEEISFDADLHAG 415

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           KT  I   +++  + +    TD+  +IL
Sbjct: 416 KTYTITKNHIQEKLENLVENTDLAKYIL 443


>gi|325125938|gb|ADY85268.1| ATP dependant protease, ATP binding unit, heatshock protein
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 464

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 283/467 (60%), Gaps = 44/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124

Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153
             A + ++  LV                        G      T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210
           KL  G + ++E+ IEV                   +  +    S ++G    KKK++  +
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREG
Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL 
Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|302833497|ref|XP_002948312.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f.
           nagariensis]
 gi|300266532|gb|EFJ50719.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f.
           nagariensis]
          Length = 663

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/425 (44%), Positives = 276/425 (64%), Gaps = 27/425 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ +V  LDRYIIGQ DAKRAVA+A RNRWRR+++P  +RD+++PKNILL+GPTG GK
Sbjct: 1   MTPKAVVELLDRYIIGQDDAKRAVAVAYRNRWRRKRVPVSIRDDIVPKNILLIGPTGCGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++ AI++VR   R +  +  
Sbjct: 61  TEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAAISLVRNKLRKQNEQAL 120

Query: 127 SINAEERILDALVGKTA-----TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN--- 178
               EERIL AL+ + +          E  R++LR+GE+ +  I++++   ++  S    
Sbjct: 121 KAAVEERILRALLQQESLGAAGPGGGLEALRERLRNGELENVFIEVDLTPPANGGSGRGG 180

Query: 179 --FDI----PGGASVGILNLSELFSKVMGSGRKKKIR-------MSVQKCYPELMRDESD 225
              D+           ++NL  L S   G    + +R         V++  P +   E++
Sbjct: 181 GVLDLGPGGGVPGGPVVINLERLMS---GKRDVRTLRDELQLLVTEVREARPLIEDVEAE 237

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS 282
           R+   + + +++I   E  GIVF+DE DKIV+   G        S EGVQRDLLP++EGS
Sbjct: 238 RMFPPEQLVKEAIAATEQDGIVFIDEIDKIVSGGRGERWRSGDPSSEGVQRDLLPIIEGS 297

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            VSTK+G+INTDHILFI +GAFH  +P+DL+ E+QGR P+RV LK L + DF  ILT+ E
Sbjct: 298 VVSTKHGNINTDHILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFYRILTEPE 357

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            NLI Q + L+  EG+ L+FT +++  +  VA  +N T+ +IGARRL  V+ERV+E++SF
Sbjct: 358 YNLIKQQQVLLAAEGVDLEFTPEALTEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSF 417

Query: 403 SASDL 407
           SA +L
Sbjct: 418 SAPEL 422


>gi|313123909|ref|YP_004034168.1| ATP-dependent hsl protease ATP-binding subunit hslu [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280472|gb|ADQ61191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325686012|gb|EGD28071.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 464

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 281/467 (60%), Gaps = 44/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153
             A                         E I   L G      T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210
           KL  G + ++E+ IEV                   +  +    S ++G    KKK++  +
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREG
Sbjct: 238 PVSQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL 
Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|104774156|ref|YP_619136.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123378434|sp|Q1G9V4|HSLU_LACDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|103423237|emb|CAI98070.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 464

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 283/467 (60%), Gaps = 44/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRTQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124

Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153
             A + ++  LV                        G      T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210
           KL  G + ++E+ IEV                   +  +    S ++G    KKK++  +
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREG
Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL 
Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|256851127|ref|ZP_05556516.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660551|ref|ZP_05861466.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 115-3-CHN]
 gi|282932234|ref|ZP_06337678.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|297205992|ref|ZP_06923387.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           jensenii JV-V16]
 gi|256616189|gb|EEU21377.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548273|gb|EEX24248.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 115-3-CHN]
 gi|281303629|gb|EFA95787.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|297149118|gb|EFH29416.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           jensenii JV-V16]
          Length = 460

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/463 (40%), Positives = 288/463 (62%), Gaps = 40/463 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQNEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAEQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214
            G + D+++ IEV + +  ++      G     +N   L   +M    KKK++  ++V+ 
Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMGDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD
Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKDAG-QVSREGVQRD 297

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF
Sbjct: 298 VLPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E
Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|301096597|ref|XP_002897395.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Phytophthora infestans T30-4]
 gi|262107086|gb|EEY65138.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Phytophthora infestans T30-4]
          Length = 482

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/456 (41%), Positives = 289/456 (63%), Gaps = 35/456 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKT 67
           P ++V  LD++I+GQ++AK+AVA+ALR+RWRR+QL  D LR E+ P NIL+ GPTG GKT
Sbjct: 35  PEDVVRALDKFIVGQEEAKKAVAVALRSRWRRRQLQNDALRAEISPMNILMSGPTGSGKT 94

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+++G+PF+KVE TKFTE+G  G N + +I+D+VDVA+N+     R E ++  +
Sbjct: 95  EIARRLAKISGSPFLKVEATKFTEVGIYGANADSMIKDIVDVAVNM----ERAEAQKLHA 150

Query: 128 INAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
             + ER +D LV     K  +  +R   R+ +  G+  ++++ +++      +SN   P 
Sbjct: 151 TASRERAIDRLVDLLDHKKLSDISRADLREDIATGKADNRKVRVQL----KPLSNKTRPS 206

Query: 184 GASVG------------ILNLSELF-SKVMGSGRKKK---IRMSVQKCYPELMRDESDRL 227
            A+              + +L  L  S+  G G K +     M+V++  P L  +E+D +
Sbjct: 207 SANPEMMMEMPPELEKMMAHLDTLMTSRFSGGGSKSEDNTTSMTVKEALPRLEAEEADEI 266

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIV-----ARDSGNGIGVSR-EGVQRDLLPLVEG 281
           ID D V + +++ V++ GIVFLDE DK+      AR  GNG    + EGVQ++LL L EG
Sbjct: 267 IDDDEVVKRALENVQHNGIVFLDEIDKLASAGDQARSGGNGASYRKGEGVQKELLALTEG 326

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
            +V+T+YG + TDHILFIASGAFH S+P+DL+PE+QGR P+RV L  L  ++F  IL DT
Sbjct: 327 CAVNTRYGLVYTDHILFIASGAFHRSKPSDLMPELQGRLPIRVALSPLGAAEFEKILKDT 386

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           E NL+ Q   LM+TEG+ L FT+D+I  +A +A  +N+   +IGARRL T++ ++ E++S
Sbjct: 387 EHNLLEQTSALMETEGVKLTFTDDAISEIASIAEQVNAQTDNIGARRLATIISKITEEVS 446

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A  +   T  +D +YV+  + +    TD+  FIL
Sbjct: 447 FHAPKMNGMTFEVDRKYVQQRLSNVLERTDLSKFIL 482


>gi|281210431|gb|EFA84597.1| Heat shock protein HslVU [Polysphondylium pallidum PN500]
          Length = 611

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 286/437 (65%), Gaps = 17/437 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P+EIV+ELDRYIIGQ +AKRAV+IALRNRWRR++L + ++ ++ PKNIL++GPTGVG
Sbjct: 187 SLQPKEIVTELDRYIIGQAEAKRAVSIALRNRWRRKRLDSSIKHDVYPKNILMIGPTGVG 246

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TK+TE+G+ G +V+ IIRDLV+V+IN ++       ++Q
Sbjct: 247 KTEIARRLAKIVNAPFVKVEATKYTEVGFHGPDVDSIIRDLVEVSINNIKSKIGSTHKQQ 306

Query: 126 ASINAEERILDALVGKTATSNTRE--VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                E+ I+ +LVG T    + +  V  K L + +I   E+D+   + S  +    IP 
Sbjct: 307 IDQEIEKEIISSLVGPTFQDRSYDDLVKEKCLENIQI---ELDLPSNNDSKSVDEEIIP- 362

Query: 184 GASVGILNLSELFS-KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                    ++LF+ +V  +   KK  ++V +    L +   D++I    V + ++Q  E
Sbjct: 363 --------FAKLFNIQVEVNKPTKKKTLTVAEARNTLEKIYKDKVIVAQDVTKLAVQSAE 414

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             GIVFLDE DKI  V   S  G   S +GVQRDLLP++EG +V+TKYG+++T  ILFIA
Sbjct: 415 QNGIVFLDEIDKICTVKESSHRGGDASTDGVQRDLLPIIEGCNVNTKYGNVDTSRILFIA 474

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH ++P+DL+ E+QGR P+RV LK L + DF  ILT+ ++N I Q   L+KTE I L
Sbjct: 475 SGAFHSNKPSDLISELQGRLPIRVELKPLEQHDFFRILTEPKNNQIQQQVALLKTEDIDL 534

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FT+D++  +A +A   N+ V +IGARRL  V+E+++EDISF+    + + V I  + V+
Sbjct: 535 EFTQDALQEIARIAFEANAQVQNIGARRLHGVIEKIVEDISFNCDTHKGQKVTITVDDVK 594

Query: 421 LHIGDFPSETDMYHFIL 437
            H+ D   +TD+  +I+
Sbjct: 595 KHLSDLMLKTDLSKYII 611


>gi|302764596|ref|XP_002965719.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii]
 gi|300166533|gb|EFJ33139.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii]
          Length = 489

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 286/440 (65%), Gaps = 36/440 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQ  AKRAVA+A R R+ R                        GK
Sbjct: 77  LTPAKVVEVLDRYIVGQTAAKRAVAVAFRMRFSRAWC--------------------CGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 117 TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 176

Query: 127 SINAEERILDALVG--------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             + E+RILD LVG        K+ TS   ++FRK  R+G I +++I ++V +    +  
Sbjct: 177 EKSVEDRILDVLVGVQQEEISEKSLTSM--DMFRKLYREGAIDNRKIQLDVPEGRVRLP- 233

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            D+ G      L +++L  KV+ S + ++  ++V +  P L   E ++ +  D + +D+I
Sbjct: 234 VDVMGNG----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAI 289

Query: 239 QMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           Q+ E+ GIVF+DE DKIV   ++  G   S EGVQRDLLP++EGS V+TKYG++NTDHIL
Sbjct: 290 QLTESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHIL 349

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FI SGAFH  +P+D+L E+QGR P+RV LK+L + D   ILT+ E N++ Q + L++TEG
Sbjct: 350 FICSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLETEG 409

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L FTED++  LA+VA  +N ++ +IGARRL TV+ERV+EDISFSA +   + ++ID E
Sbjct: 410 VELIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKE 469

Query: 418 YVRLHIGDFPSETDMYHFIL 437
            VR  +GD  ++ D+  F+L
Sbjct: 470 KVRKSVGDLLNKMDLSKFVL 489


>gi|57242464|ref|ZP_00370402.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           upsaliensis RM3195]
 gi|57016749|gb|EAL53532.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           upsaliensis RM3195]
          Length = 439

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 300/445 (67%), Gaps = 18/445 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR +L  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMRLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120

Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174
           +     E++IL+ L+    K  +   +E ++K       KL++G++ +  I++E++    
Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQKSLEKMRIKLKNGDLDESVIELEISQNMF 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233
           D +N ++P   S       +   KV+G G KK  +    K     ++ E SD+++D + +
Sbjct: 181 D-TNPNLPPEMSA-----MQDMVKVIGVGSKKVKKEMKIKDARNTLKSEASDKILDTENI 234

Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++ VEN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGSSV TK G + 
Sbjct: 235 KSEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVK 294

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY EL
Sbjct: 295 TDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYIEL 354

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+S+ A +   K+ 
Sbjct: 355 LKTEDLSLEFDDEAIREIAKIASRANEEMQDIGARRLHTVIEKLLEDLSYEADEYAGKSF 414

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           V+D + V   +       D+  +IL
Sbjct: 415 VVDKKMVEEKLSSIVENKDLARYIL 439


>gi|237736692|ref|ZP_04567173.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420554|gb|EEO35601.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 437

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 290/442 (65%), Gaps = 10/442 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLV 59
           M +    +P++IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+
Sbjct: 1   MGINKELTPKKIVEELNKYIISQDEAKKNVAISLRNRDRRKMIEDENLRKEITPKNIILI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TGVGKT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DLV +    ++E + 
Sbjct: 61  GSTGVGKTEIARRIAKIANAPFLKVEATKYTEVGYVGKDVESIIKDLVALTYRKMKEEKY 120

Query: 120 DEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             ++  +   A ER+   L    T     +E+ +K+L +G+    EI+I+     +DI  
Sbjct: 121 GLLKLSSLDAAIERVAKILKPYDTLNDEDKEIIKKELAEGKYDHTEIEIDRPKKDNDIPI 180

Query: 179 FDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            ++  G+     ++  L  ++M +  G+ KK+  SV       + +E ++ ID++ + ++
Sbjct: 181 IEVISGSE----DIGGLVDQMMSTLPGKLKKMTTSVLNALNLFLEEEVEKKIDLEALAQE 236

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++ VEN GI+F+DE DKI  R+ G+G G VSR+GVQRD+LP+VEGS+V TKYG + TDH
Sbjct: 237 VVENVENNGIIFIDEIDKITERE-GSGKGDVSRQGVQRDILPIVEGSTVMTKYGPVRTDH 295

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF  S P+DL+PE+QGRFP+RV L++L K DF  ILT+ E NL+ QYK ++  
Sbjct: 296 ILFIAAGAFSQSSPSDLMPELQGRFPIRVKLQNLEKEDFVKILTEVEYNLLEQYKAMLSV 355

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           + + L FT+ +I+ +A++    N  + +IGARRL +V+E +L DI F A   ++K + ID
Sbjct: 356 DNVELTFTKGAIEKIAEITAIQNEKIENIGARRLASVVEELLRDIMFEAPYKEKKKISID 415

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             +V+  +     E  +  FIL
Sbjct: 416 INFVKKVLKKEIEEESLDKFIL 437


>gi|300812252|ref|ZP_07092690.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496766|gb|EFK31850.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 464

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 282/467 (60%), Gaps = 44/467 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YIIGQ +AK++VAIAL NR+RR QLP  ++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIIGQNEAKKSVAIALYNRYRRAQLPEYVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153
             A + ++  LV                        G      T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210
           KL  G + ++E+ IEV                   +  +    S ++G    KKK++  +
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREG
Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL 
Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|310778883|ref|YP_003967216.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter
           polytropus DSM 2926]
 gi|309748206|gb|ADO82868.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter
           polytropus DSM 2926]
          Length = 440

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/415 (44%), Positives = 287/415 (69%), Gaps = 7/415 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64
             +PREIV +LD+YI+ Q +AK+ VAI+LRNR+RR+ +  +++R E+ PKNI+L+GPTGV
Sbjct: 4   KLTPREIVEQLDKYIVSQDEAKKNVAISLRNRYRRKAIEDSEMRKEITPKNIILMGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++A +PF+KVE TK+TE+GYVG++VE +I+DLV + I  ++  + + +RE
Sbjct: 64  GKTEIARRLAKIADSPFLKVEATKYTEVGYVGKDVESMIKDLVGITIRKIKTEKIENLRE 123

Query: 125 QASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSD--ISNFD 180
           +      E++   L+    T N  E  +  ++++DG+ ++ E+++E +  S    +  F 
Sbjct: 124 KFMSQVLEKVA-KLIKPYDTLNPDEKGKIIQEIKDGKHAEVEVELEKSKKSDSPVVEVFS 182

Query: 181 IPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  G+  + E + S     G+ KKI++ V+     +++DE ++ IDM+++  ++++
Sbjct: 183 AGNSQDEGMQGIIENIMSSFPSGGKAKKIKLKVKDALEYILKDEIEKSIDMESLIPEAVK 242

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           M E  GI+F+DE DKI  R+  +   VSR+GVQRD+LP+VEG++V TKYG++ TDHILF+
Sbjct: 243 MTEEDGIIFIDEIDKIAEREGASRGEVSRQGVQRDILPIVEGTTVMTKYGAVKTDHILFV 302

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           A+GAF +S P+DL+PE+QGRFPV+V LKSL K DF  ILT  E NLI QYK L+ ++ + 
Sbjct: 303 AAGAFTLSSPSDLMPELQGRFPVKVKLKSLEKEDFIKILTAVEYNLIQQYKLLLGSDDVE 362

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +DFT  +ID +++VA+ LN +V +IGARRL  V+E VL+DI F A    +K + I
Sbjct: 363 IDFTPGAIDRISEVAIELNESVENIGARRLAAVVETVLKDIMFEAPYEDKKKIKI 417


>gi|167998406|ref|XP_001751909.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697007|gb|EDQ83344.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 762

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 198/436 (45%), Positives = 278/436 (63%), Gaps = 32/436 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P  IV  LDRYI+GQQDAKRAVA+ALRNRWRR ++P  LRDE++PKNIL++GPTG GK
Sbjct: 331 LTPVRIVEMLDRYIVGQQDAKRAVAVALRNRWRRHRIPDALRDEIVPKNILMIGPTGCGK 390

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KV      E   V + VE     L+D+ +           R++ 
Sbjct: 391 TEIARRLAKIAYAPFVKVRAKLVKE---VEKAVEA---RLLDIFM----------ARQRP 434

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            +  E     A+ G  A     E FRK  RDG + +++I +++ D  S +   +I G + 
Sbjct: 435 PVEGE----SAVPGARADY---ETFRKLYRDGALDNRKIQLDIPDGRSRLP-LEIGGVSG 486

Query: 187 VG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G    I  L ++  KV  S R +++ +++ +  P L   E ++ ++ D + +D+I + E
Sbjct: 487 FGVNELIFRLPQM-EKVFKSQRMERMEITIGEAKPILREIEMEKHLNSDQITKDAILLAE 545

Query: 243 NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           + GIVF+DE DKIV   ++ +G   S EGVQRDLLP++EGS V+TKYG++NTDHILFI S
Sbjct: 546 SDGIVFIDEIDKIVTNHETRHGADASSEGVQRDLLPIIEGSMVNTKYGNVNTDHILFICS 605

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH  +P+D+L E+QGR P+RV LK L + D   ILT+ E+N+I Q + LMKTE I L 
Sbjct: 606 GAFHSCKPSDMLAELQGRLPIRVELKGLGREDLYRILTEPETNMIRQQQLLMKTEDINLV 665

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+I+ LA VA  +N +V +IGARRL TV+ERV+EDISF A +   +T  ID E   L
Sbjct: 666 FTDDAIEELATVAAEVNRSVDNIGARRLHTVIERVVEDISFHAPERAGETYTIDKEVHLL 725

Query: 422 HIGDFPSETDMYHFIL 437
            +  F +E   Y F L
Sbjct: 726 PL--FHNEEHFYGFSL 739


>gi|315929326|gb|EFV08534.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 419

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/425 (44%), Positives = 292/425 (68%), Gaps = 22/425 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISNEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180

Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
           D +N ++P   GA   I+       KV+G G KK  +    K     +++E+ ++++D +
Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232

Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           ++  ++++  EN GI+F+DE DKI V+  + N    S+EGVQRDLLP+VEGS+V TK G+
Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY 
Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L+KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K
Sbjct: 353 QLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412

Query: 411 TVVID 415
             V+D
Sbjct: 413 KFVVD 417


>gi|291296104|ref|YP_003507502.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber
           DSM 1279]
 gi|290471063|gb|ADD28482.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber
           DSM 1279]
          Length = 417

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 288/436 (66%), Gaps = 22/436 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD++I+GQ  AKRAVA+ALRNR RR++LP +L  E+MPKNIL++GPTGV
Sbjct: 1   MNLTPAEIVRELDKHIVGQAAAKRAVAVALRNRIRRKKLPPELAREVMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + A  +V +  + +V  
Sbjct: 61  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEAAYQLVMQEMKAKVEG 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEE +   L           V   +LR G  +D+ I+IEVA+ +  +    + GG
Sbjct: 121 RAQNLAEEEVASIL----------RVSPLELRTGRYNDQLIEIEVAEEAR-LPMMGMFGG 169

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRLIDMDTVHRDSIQMVEN 243
               + +L ++   +M   + ++     +    E++++ E++RL+D +   +++++  + 
Sbjct: 170 EQ--MQSLQDMLKGLMPQRKVRRKVRVKEAL--EILKNQEAERLVDKEEATQEALRRAQE 225

Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            GIVF+DE DKI AR  G   G  VS EGVQRDLLP+VEG+ VST+ G ++TDH+LFIA+
Sbjct: 226 EGIVFIDEVDKI-ARGKGAVGGPDVSGEGVQRDLLPIVEGTVVSTRLGPVSTDHVLFIAA 284

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DL+PE+QGRFP+RV L+ L  ++F  IL + E++LI QY+ L+  +   L 
Sbjct: 285 GAFHVSKPSDLIPELQGRFPIRVELEPLGPAEFERILREPENSLIKQYQALLAADETELH 344

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT ++I A+A  A   N  + DIGARRL TV+ERVLE++SF  S      V +  EYV  
Sbjct: 345 FTPEAIQAVARFAHQANQELEDIGARRLATVLERVLEEVSFQTSL---GRVEVTKEYVEA 401

Query: 422 HIGDFPSETDMYHFIL 437
            + D  +  D+  +IL
Sbjct: 402 RLKDVLASHDLSRYIL 417


>gi|25814819|gb|AAN75636.1|AF270500_2 HslU [Leptospira borgpetersenii]
          Length = 391

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 180/382 (47%), Positives = 265/382 (69%), Gaps = 33/382 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVGK
Sbjct: 8   LTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E A
Sbjct: 68  TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 127

Query: 127 SINAEERILDALVG---------------KTATSN----------TREVFRKKLRDGEIS 161
              AEE +LD L+                KT++++          TRE  RKKL+ G++ 
Sbjct: 128 KQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKLD 187

Query: 162 DKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           D+E+++++ + S S I    + G  ++   +L      V+G    KK +    K  PE +
Sbjct: 188 DQEVELDLPNPSVSQIPMLQVFGAGNLD--DLDNQLQNVLGDLLPKKNKKRKLKI-PEAI 244

Query: 221 RD----ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           +     E+D+L+D D V R++++ VE  GI+FLDE DKI  R+  NG  VSREGVQRDLL
Sbjct: 245 KTLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLL 304

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF  
Sbjct: 305 PIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEK 364

Query: 337 ILTDTESNLILQYKELMKTEGI 358
           ILT   S+L  QY+ L+ T+GI
Sbjct: 365 ILTAPRSSLARQYEALLFTDGI 386


>gi|28317391|tpe|CAD29867.1| TPA: regulatory subunit of the HslVU complex [Trypanosoma brucei]
          Length = 510

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/465 (42%), Positives = 277/465 (59%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPT
Sbjct: 48  LVRNMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPT 107

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVR 115
           GVGKT I+RRLA+L  APFIKVE TK+TE+G+ G+NVE II DL   A       + I R
Sbjct: 108 GVGKTEIARRLAKLVDAPFIKVEATKYTEVGFKGKNVESIIEDLYSNAKTKDKRRLEIER 167

Query: 116 ESRRDEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEI--------- 165
           E +  E+  +   N       A     ++T N+  V+     D   S ++          
Sbjct: 168 EKKAHELALEIVFNGWHSCRSASGSFGSSTRNSGSVYSSAEEDKNSSSRDNVTFEEFKEK 227

Query: 166 -------DIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMSVQ 213
                  D+ V D +        P  +  SV +L++  L    +GS   G K ++   V+
Sbjct: 228 YKTQFKDDMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKRVE 285

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +  P   ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GVQ+
Sbjct: 286 EALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGVQQ 345

Query: 274 DLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L + 
Sbjct: 346 DLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALKEE 405

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D R IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL TV
Sbjct: 406 DIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLHTV 465

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ERV+++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 466 VERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 510


>gi|328950838|ref|YP_004368173.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451162|gb|AEB12063.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus
           hydrothermalis DSM 14884]
          Length = 417

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 207/435 (47%), Positives = 290/435 (66%), Gaps = 23/435 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ  AKRAVA+ALRNR+RR++LPA++  E++PKNIL++GPTGVG
Sbjct: 3   ELTPREIVQELDKYIIGQAAAKRAVAVALRNRYRRKRLPAEMAREVIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+V+ I+RDL +VA  +V + + + V E+
Sbjct: 63  KTEIARRLARLARAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMQEKTEAVAER 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERI + L           V    +R G   D  +++EVA+ +       +P   
Sbjct: 123 ALARAEERIAELL----------RVSPYDVRSGRYDDHLVEVEVAEEAQ------LPFMG 166

Query: 186 SVG---ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            +G   +  L+++ S  +   R+ + RM V++    L   E++ +ID + V +++++  +
Sbjct: 167 MMGAEQMQGLTDMLSSFL-PKRRVRRRMKVREAREVLKAQEAEMMIDKEEVTQEAVRRAQ 225

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVF+DE DKI   D   G  VS EGVQRDLLP+VEG+ V+T+ G ++T+H+LFI +G
Sbjct: 226 EDGIVFIDEIDKIAGSDKIQGPDVSGEGVQRDLLPIVEGTVVNTRLGPVSTEHVLFIGAG 285

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DL+PE+QGRFP+RV L  L   DF  ILT TE++LI QY  L+ T+GI L+F
Sbjct: 286 AFHVAKPSDLIPELQGRFPIRVELTELTAEDFARILTSTENSLIRQYTALLGTDGIELEF 345

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T ++I A+AD A   N  + DIGARRL TV+ERVLE+ISF  +DL    V I  EYV   
Sbjct: 346 TPEAIRAIADYAYRANRELEDIGARRLHTVLERVLEEISFQ-TDL--GRVTITKEYVEER 402

Query: 423 IGDFPSETDMYHFIL 437
           +       D+  +IL
Sbjct: 403 LSPVMGSEDLSRYIL 417


>gi|330822067|ref|XP_003291622.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum]
 gi|325078187|gb|EGC31852.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum]
          Length = 491

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/438 (41%), Positives = 276/438 (63%), Gaps = 12/438 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +I+++LD YIIGQ +AK++V+ ALR RWRR+++   +R ++ PKNIL++GPTGVG
Sbjct: 60  NLNPNQILNKLDEYIIGQANAKKSVSSALRLRWRRKRVDPSIRADVSPKNILMIGPTGVG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +  APFIKVE TK+TE+GY G +V+ II+DL+DVAI+ ++    +  +  
Sbjct: 120 KTEIARRLAAIVNAPFIKVEATKYTEVGYHGPDVDTIIKDLIDVAISNIKSKIAESHKAN 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
              + E+ I+  ++G   ++ + E   K  R+  I    ++I+V ++      FD    +
Sbjct: 180 IEADVEKEIITNILGPNGSNGSIEELTKLYRNKSIETIMVEIDVPNS------FDKQHSS 233

Query: 186 SVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           S+ + + S     L          KK +++V +    L +   ++      V + +IQ V
Sbjct: 234 SIQLDDESPFIRLLVPGAASEKNSKKRKVTVSEARAILEKTYREKYTVSQDVTKLAIQSV 293

Query: 242 ENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           E  GIVFLDE DKI     +  NG   S +GVQRDLLP++EG +VSTKYG ++T  ILFI
Sbjct: 294 EQNGIVFLDEIDKICTPRENYKNGGDASSDGVQRDLLPIIEGCNVSTKYGMVDTSKILFI 353

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH S+P+DL+ E+QGR P+RV LK L + DF  ILT+  +N I Q + LMKTE I 
Sbjct: 354 ASGAFHNSKPSDLISELQGRLPIRVELKPLEEEDFYRILTEPRNNQIKQQQALMKTENID 413

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FTE+++  +A +    N+ + ++GARRL  ++ER++EDISF+    +++TV I  E V
Sbjct: 414 LQFTEEALREVAKITFESNAQIQNLGARRLHGIIERIIEDISFNCHLYKDQTVTIGVEDV 473

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  + D   +TD+  +I+
Sbjct: 474 RKKLSDLLLKTDLSKYII 491


>gi|328948445|ref|YP_004365782.1| heat shock protein HslVU, ATPase subunit HslU [Treponema
           succinifaciens DSM 2489]
 gi|328448769|gb|AEB14485.1| heat shock protein HslVU, ATPase subunit HslU [Treponema
           succinifaciens DSM 2489]
          Length = 507

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 198/494 (40%), Positives = 288/494 (58%), Gaps = 67/494 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV +LD YIIGQQ AKR VA+ALRNR RR +LP ++RDE+ PKNIL++GPTGVGK
Sbjct: 18  LTPAQIVEKLDNYIIGQQKAKRFVAVALRNRQRRIKLPEEIRDEVAPKNILMMGPTGVGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGY--------------VGRNV--EQIIRDLVDVA 110
           T I+RRLA+L GAPF+KVE TK+TE+GY              VG N+   ++   L +  
Sbjct: 78  TEIARRLAKLCGAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEMQEKLREKC 137

Query: 111 INIVRESRRD---------EVREQASINAEERILDALVGKTAT----------------- 144
           I IV +   D         + R+ +S   +  +L  + G+++                  
Sbjct: 138 IPIVEDQLLDLLLPGSSGKKKRKDSSPKRDVHVLGNIFGESSPIQGSLIQVDIPKENPAQ 197

Query: 145 -----------------SNTREVFRKKLRDGEISDKEIDIEVADTSS---DISNFDIPGG 184
                            ++TRE FR  LR+G++ D+ ++I V    S   ++     P  
Sbjct: 198 DEPQEEIEEETSTSEDMASTREKFRTMLREGKLEDRVVEITVHRQPSFSMNMMGASNPED 257

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               I  L EL S     GR K+  ++V++    LM D  +R  D D    ++ + VE  
Sbjct: 258 LEESINGLQELLS----GGRSKRRNVTVREARQILMADTLERNTDSDKAADEAKKRVEQS 313

Query: 245 GIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GI+F+DE DKI      G+   VSREGVQRD+LP+VEGS V+TK+G +NT HILFI +GA
Sbjct: 314 GIIFIDEIDKIATHGGEGDRQAVSREGVQRDILPIVEGSDVNTKWGVVNTTHILFIGAGA 373

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           F VS P+DL+PE+QGRFP+RV L+ L K DF+ ILT+ ++ L+ QY+ L+ TEG+ L F 
Sbjct: 374 FSVSAPSDLIPELQGRFPLRVELEPLKKEDFKRILTEPKNALVKQYEALLATEGVTLKFA 433

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++ID ++ +A ++NS   +IGARRL T+ME VLE++SF A     +T+ ID++YV   +
Sbjct: 434 DEAIDRMSFIAEDVNSHSENIGARRLHTIMETVLEELSFDADRHAGETITIDSKYVDEKL 493

Query: 424 GDFPSETDMYHFIL 437
                  ++  +IL
Sbjct: 494 NGVIQNQNLERYIL 507


>gi|320450079|ref|YP_004202175.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus
           SA-01]
 gi|320150248|gb|ADW21626.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus
           SA-01]
          Length = 416

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/435 (44%), Positives = 281/435 (64%), Gaps = 21/435 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV EL ++I+GQ+ AKRAVA+ALRNR+RR++LP ++  E+ PKNIL++GPTGV
Sbjct: 1   MNLTPAEIVRELSKHIVGQEAAKRAVAVALRNRYRRKKLPPEVAREVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V E  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVMEEMKKKVEE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEE +   L    A          ++R G +    ++++V +  S      +P  
Sbjct: 121 KALALAEEELATLLRASVA----------EVRAGRLDSLSVEVQVEEEMS------LPFM 164

Query: 185 ASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             +G      +   + G   K+ +R  M+V++    L    ++RLID + +  ++ +  +
Sbjct: 165 GVLGGEGFGGMGEMLKGLLPKRPVRKRMTVKEAREVLKNQHAERLIDKEELKEEARRRAQ 224

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVF+DE DK+  R+   G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+G
Sbjct: 225 EDGIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAG 284

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DL+PE+QGRFP+RV L  L   +F  IL + E++LI QY EL++ +G  L F
Sbjct: 285 AFHVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVF 344

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED++ A+A+ A   N  + DIGARRL TV+ERVLE++SF  +DL    V I   YV   
Sbjct: 345 HEDALRAIAEAAYRANQELEDIGARRLATVLERVLEEVSFQ-TDL--GRVEITRAYVEQR 401

Query: 423 IGDFPSETDMYHFIL 437
           +    +  D+  F+L
Sbjct: 402 LEAVFASPDLTRFVL 416


>gi|118374823|ref|XP_001020599.1| heat shock protein HslVU, ATPase subunit HslU containing protein
           [Tetrahymena thermophila]
 gi|89302366|gb|EAS00354.1| heat shock protein HslVU, ATPase subunit HslU containing protein
           [Tetrahymena thermophila SB210]
          Length = 469

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/450 (40%), Positives = 279/450 (62%), Gaps = 21/450 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +K + + +P+E+V  L ++IIGQ+ AKRAVAIA RNRWRRQ L  DL+ E+ PKNIL+VG
Sbjct: 28  IKKSSSMTPKEVVEYLSQHIIGQEQAKRAVAIAYRNRWRRQFLEEDLKKEVCPKNILMVG 87

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I+RRLA+L+ APFIKVE TK+TE+GY G++VEQII+DLV  A+   + + + 
Sbjct: 88  PTGSGKTEIARRLAQLSDAPFIKVEATKYTEVGYHGKDVEQIIQDLVRTAVRNAKANHKK 147

Query: 121 EVREQASINAE---ERILDALVGKT-ATSNTREVFRKKLRDGEISDKEIDIEV------- 169
            +     I  +   ++I+DA +G   +    R   R+ + +  + D+ I +E+       
Sbjct: 148 NIENAKQIIEQIVLDQIVDAFLGPNFSNEEVRNKKREDISNNLMDDRRITVELPHDYWER 207

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            +T     N D         L+  + F + +     ++ R++V+    +L +   + L  
Sbjct: 208 VNTKGSFQNID-------EFLDYIKNFKQGLNPKNDQQ-RLTVKGARSQLYQIYEEALEK 259

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                + +I+ VE  GIVF+DE DKI        N    S +GVQRDLLPL+EG+ VSTK
Sbjct: 260 SVNYEKIAIRQVEEEGIVFIDEIDKIATSGEIQQNQKSPSADGVQRDLLPLIEGTVVSTK 319

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           +G + TDHILFI +GAF +S+P+DL+PE+ GR P+RV L+ L K++   IL   + N+I 
Sbjct: 320 WGDVKTDHILFITAGAFSMSKPSDLIPELLGRLPIRVELQQLKKNELYSILKFPKYNMIF 379

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           Q ++L+K EG+ + FT++++  +A +A   N+++ DIGARRL  ++ER LE+ISF A  L
Sbjct: 380 QQQQLLKQEGLNIQFTDEAVKKIAILAEQANTSLEDIGARRLHELIERCLENISFDAPYL 439

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++K +VID ++V   +  +  + D   F++
Sbjct: 440 EQKDIVIDQQFVDKTLQKYMEKADYRKFLI 469


>gi|325182050|emb|CCA16503.1| ATPdependent hsl protease ATPbinding subunit hslU pu [Albugo
           laibachii Nc14]
          Length = 502

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/453 (42%), Positives = 280/453 (61%), Gaps = 28/453 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKT 67
           P EIV+ELDR++IGQ++AK AVAIALRNRWRR+ +  + LR E+ P NIL+ GPTG GKT
Sbjct: 54  PGEIVAELDRHVIGQKEAKCAVAIALRNRWRRRHIQNESLRAEVSPMNILMSGPTGSGKT 113

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  +PF+KVE TK+TE+G  G + + +I+DL++VAI+  RE+     R++ S
Sbjct: 114 EIARRLAKMTNSPFLKVEATKYTEVGIYGASADSMIKDLMNVAIDAEREN----ARKRCS 169

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRD----GEISDKEIDIEVADTSSDISN----- 178
             A ER LD LV     S++ +  R  LR+    G +    I I++ + S+         
Sbjct: 170 RAARERALDRLVKHIHESSSSQRNRPNLREDIDSGRLDSVMISIQLRNISNRPKGPRGSM 229

Query: 179 ---FDIPGGASVGILNLSELFSKVMGSGRK-----KKIRMSVQKCYPELMRDESDRLIDM 230
               +IP      + NL+ + +K   +        K  R+SV+     L  +E++ +I+ 
Sbjct: 230 DMMMEIPPEFEQMVKNLNSMMNKHANTSSSQGPFAKAERLSVKDALQRLKFEEAEDIINE 289

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIV-ARDS---GNGIGVSR--EGVQRDLLPLVEGSSV 284
           D V  ++++ V+N GI+FLDE DK+  + DS   G G G  R  EGVQ++LL L EG  V
Sbjct: 290 DEVIENALENVQNNGIIFLDEIDKLAESSDSSMAGRGGGQFRKGEGVQKELLALTEGCVV 349

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            T++G I+T+HILFIASGAFH   P+DL+PE+QGR P+RV L  L   ++  IL +TE N
Sbjct: 350 RTRHGMIHTNHILFIASGAFHKCSPSDLIPELQGRLPIRVTLSPLGAPEYERILKETEYN 409

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ Q + L++TEGI L FT+D+I  +A +   +NS   DIGARRL T++ +V ++ISF A
Sbjct: 410 LLQQMQALLETEGIQLVFTDDAIVEMAAITAQINSQSDDIGARRLSTIVSKVTDEISFHA 469

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +   T  ID  YVR  +     +TD+  +IL
Sbjct: 470 PKMTGMTHQIDKAYVRQRLSSVMEKTDLRKYIL 502


>gi|313681855|ref|YP_004059593.1| heat shock protein hslvu, ATPase subunit hslu [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154715|gb|ADR33393.1| heat shock protein HslVU, ATPase subunit HslU [Sulfuricurvum
           kujiense DSM 16994]
          Length = 442

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/448 (43%), Positives = 286/448 (63%), Gaps = 21/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N  P+EIV  LD++IIGQ +AK+ +A+ALR R+RR +L   L+DE+MPKNIL++G TGV
Sbjct: 1   MNMIPQEIVDYLDQHIIGQNNAKKTIALALRTRYRRLRLDPPLQDEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L   PFIKVE +K+TE+G+VGR+VE ++RDLV  + ++V+    +  +E
Sbjct: 61  GKTEIARRLAKLMQLPFIKVEASKYTEVGFVGRDVESMVRDLVMTSYSMVKAEHNENNKE 120

Query: 125 QASINAEERILDALVGK---------TATSNTREV-----FRKKLRDGEISDKEIDIEVA 170
                 E  I+D L  K         T     R         KK+R+G + D+ ++IE++
Sbjct: 121 AI----EHYIVDILTHKLHPEVPHFPTEEEKARHEISKSELSKKIRNGGMDDRLVEIELS 176

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               + ++ ++P   +    + S++FS V+G    KK  +SV +    L ++ S++L++ 
Sbjct: 177 TGGIEFNDTNMPPEIARVQESFSKMFS-VIGKEENKK-EVSVAEAKEILRQEASEKLLNH 234

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYG 289
           D + R++++  E  GI+FLDE DKI      +G    S+EGVQRDLLP+VEGS VSTK+G
Sbjct: 235 DQIKREALKRTEEGGIIFLDEIDKIAVNSRSDGRNDPSKEGVQRDLLPIVEGSIVSTKFG 294

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           SI TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ LN+    LILT  +++L+ QY
Sbjct: 295 SIKTDHILFIAAGAFHLTKPSDLIPELQGRFPLRVELEPLNEDALYLILTKPKNSLLEQY 354

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K L+ TE + L F E +I A+A  A   N    DIGARRL TV+E+VLEDISF+A   + 
Sbjct: 355 KALLATEEMQLSFDEAAIRAMARYAQRANEKTEDIGARRLHTVVEKVLEDISFNAHLHKN 414

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V +    V   +     + D+  +IL
Sbjct: 415 SAVTVTEAMVNTILLPLVEDEDLARYIL 442


>gi|74025438|ref|XP_829285.1| heat shock protein HslVU ATPase subunit [Trypanosoma brucei
           TREU927]
 gi|70834671|gb|EAN80173.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei]
          Length = 496

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 278/467 (59%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64
           + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+  + LR +++PKNILLVGPTGV
Sbjct: 36  DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRES 117
           GKT ISRR+A+L  APF+KVE TK+TE+G+ G++VE II DL   A       + I RE 
Sbjct: 96  GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155

Query: 118 RRDEVREQASINAEERIL----------------DALVGKTATSNTR-----EVFRKKLR 156
              E+  +   N                      D+   +   S++R     E F++K +
Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGSSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMS 211
             +  D   D+ V D +        P  +  SV +L++  L    +GS   G K ++   
Sbjct: 216 T-QFKD---DMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKR 269

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++  P   ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GV
Sbjct: 270 VEEALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGV 329

Query: 272 QRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           Q+DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L 
Sbjct: 330 QQDLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALK 389

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + D R IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL 
Sbjct: 390 EEDIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLH 449

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+ERV+++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 450 TVVERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496


>gi|261335254|emb|CBH18248.1| heat shock protein HslVU, ATPase subunit, HslU putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 496

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 278/467 (59%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64
           + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+  + LR +++PKNILLVGPTGV
Sbjct: 36  DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRES 117
           GKT ISRR+A+L  APF+KVE TK+TE+G+ G++VE II DL   A       + I RE 
Sbjct: 96  GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155

Query: 118 RRDEVREQASINAEERIL----------------DALVGKTATSNTR-----EVFRKKLR 156
              E+  +   N                      D+   +   S++R     E F++K +
Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGPSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMS 211
             +  D   D+ V D +        P  +  SV +L++  L    +GS   G K ++   
Sbjct: 216 T-QFKD---DMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKR 269

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++  P   ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GV
Sbjct: 270 VEEALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGV 329

Query: 272 QRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           Q+DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L 
Sbjct: 330 QQDLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALK 389

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + D R IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL 
Sbjct: 390 EEDIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLH 449

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV+ERV+++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 450 TVVERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496


>gi|71657012|ref|XP_817038.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70882205|gb|EAN95187.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/454 (41%), Positives = 282/454 (62%), Gaps = 27/454 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+   +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL   A    +   +  +  +
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNA----KTKAKRRLEAE 156

Query: 126 ASINAEERILDALVGKTAT------SNTREVFRKKLRDG------EISDKEIDIEV-ADT 172
            +  A    LD + G  AT       + R  + +   DG      +++ +E   +   + 
Sbjct: 157 RAEEALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYKTEF 216

Query: 173 SSDISNFDI----PG----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
             D+   DI    P     G S   ++++ LF        K ++   V++  P +++D  
Sbjct: 217 KDDLVTVDIVPPPPKHNRQGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDIL 276

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS V
Sbjct: 277 ERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSDV 336

Query: 285 STKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           + K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + + 
Sbjct: 337 TLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPKF 396

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF+
Sbjct: 397 NLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSFN 456

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             D ++K VVIDA  V+       +  D+  ++L
Sbjct: 457 CQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|71659239|ref|XP_821343.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70886720|gb|EAN99492.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/454 (41%), Positives = 281/454 (61%), Gaps = 27/454 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+   +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL   A    +   +  +  +
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNA----KTKAKRRLEAE 156

Query: 126 ASINAEERILDALVGKTAT------SNTREVFRKKLRDG------EISDKEIDIEV-ADT 172
            +  A    LD + G  AT       + R  + +   DG      +++ +E   +   + 
Sbjct: 157 RAEEALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYKTEF 216

Query: 173 SSDISNFDI----PG----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
             D+   DI    P     G S   ++++ LF        K ++   V++  P +++D  
Sbjct: 217 KDDLVTVDIVPPPPKHNRQGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDIL 276

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS V
Sbjct: 277 ERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSDV 336

Query: 285 STKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           + K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL +   
Sbjct: 337 TLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPRF 396

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF+
Sbjct: 397 NLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSFN 456

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             D ++K VVIDA  V+       +  D+  ++L
Sbjct: 457 CQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|322817707|gb|EFZ25352.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 187/455 (41%), Positives = 277/455 (60%), Gaps = 29/455 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+   +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQPEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV------------------ 107
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL                   
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNAKTKAKRRLEAERAEE 160

Query: 108 --DVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDK 163
              + +++V  S     R        +   D   G  A  T  T E F+ K +  E  D 
Sbjct: 161 ALAMTLDVVYGSWVTRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYK-TEFKDD 219

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + +++  T    +      G S   ++++ LF        K ++   V++  P +++D 
Sbjct: 220 LVTVDIVPTPPKHNR----QGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDI 275

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS 
Sbjct: 276 LERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSD 335

Query: 284 VSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           V+ K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + +
Sbjct: 336 VTLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPK 395

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF
Sbjct: 396 FNLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSF 455

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +  D ++K VVIDA  V+       +  D+  ++L
Sbjct: 456 NCQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|218296680|ref|ZP_03497398.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus
           Y51MC23]
 gi|218242993|gb|EED09526.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus
           Y51MC23]
          Length = 416

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/433 (42%), Positives = 274/433 (63%), Gaps = 17/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV EL ++I+GQ+ AK+AVA+ALRNR+RR++LP ++  E+ PKNIL++GPTGV
Sbjct: 1   MNLTPAEIVKELSKHIVGQEAAKKAVAVALRNRYRRKKLPPEVAREITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V E  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVLEEMKKKVEE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEE +   L    A           +R G + D        +    +    + GG
Sbjct: 121 KALAFAEEELATLLRASIA----------DVRSGRL-DGLYVEVQVEEEVGLPFMGVLGG 169

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            + G   + E+   ++   R  + RM+V++    L    ++RLID + +  ++ +  +  
Sbjct: 170 EAFG--GMGEMLKGLLPK-RPVRRRMTVREAREVLKNQHAERLIDKEELKEEARRRAQEE 226

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+  R+   G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+GAF
Sbjct: 227 GIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAGAF 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DL+PE+QGRFP+RV L  L   +F  IL + E++LI QY EL++ +G  L F +
Sbjct: 287 HVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVFED 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++  +A  A   N  + DIGARRL TV+ERVLE++SF     +   V I   YV   + 
Sbjct: 347 EALWTIAQAAHRANQELEDIGARRLATVLERVLEEVSFQT---ELGRVEITRAYVEKRLE 403

Query: 425 DFPSETDMYHFIL 437
              +  D+  F+L
Sbjct: 404 AVFASPDVTRFVL 416


>gi|283953975|ref|ZP_06371504.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794580|gb|EFC33320.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 403

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 272/410 (66%), Gaps = 22/410 (5%)

Query: 42  QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           QL  +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE 
Sbjct: 2   QLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVES 61

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV----------GKTATSNTREVF 151
           ++RDL + A+N+V+  +R++ +++     E +IL+ L+           +    N+ E  
Sbjct: 62  MVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKM 121

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIR 209
           R KLR+G++ +  I+IE++    D +N ++P   GA   I+       KV+G G KK  +
Sbjct: 122 RTKLRNGDLDESIIEIEISQNMFD-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKK 173

Query: 210 MSVQKCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVS 267
               K     +++E+ ++++D +++  ++++  EN GI+F+DE DKI V   + N    S
Sbjct: 174 EMKIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVTSGNSNRQDPS 233

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           +EGVQRDLLP+VEGSSV TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L 
Sbjct: 234 KEGVQRDLLPIVEGSSVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELD 293

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL+      ILT  +++L+ QY EL+KTE + LDF +++I  +A +A   N  + DIGAR
Sbjct: 294 SLDDKALYEILTRPKNSLLKQYSELLKTENLELDFDDEAIKEIAKIASRANEEMQDIGAR 353

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL TV+E++LED+SF A +   K  V+D + V   +GD     D+  +IL
Sbjct: 354 RLHTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403


>gi|322488928|emb|CBZ24177.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 503

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 279/474 (58%), Gaps = 48/474 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64
           N SPR I   LD YI+GQ   KRAVAIALRNRWRR+QL  ADLR E++PKN+LL+GPTGV
Sbjct: 36  NLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRREVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R   E+ R  
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 120 -------DEVREQASINAEERILDALV---GKT---------------------ATSNTR 148
                  D V    S++   R +D  +   GK                         +  
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSAGKAEEVTAAAADDSAAEAEESQQQQQQHNF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           E FR+   D  I++  + I   D S+  +    P   S+ + ++  L    +G G  K++
Sbjct: 216 EYFREHYLDEPITNDMVTI---DISAPQAPTKPPKEGSIDLQSVGMLLG--LG-GEPKRL 269

Query: 209 RMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           ++SV K      P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S    
Sbjct: 270 KVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSANA 329

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
            VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PVR
Sbjct: 330 DVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPVR 389

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS   +
Sbjct: 390 VELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQGQN 449

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++ERV++  SF+  + + K V I+A+ VR          ++  ++L
Sbjct: 450 IGARRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503


>gi|148926638|ref|ZP_01810319.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845157|gb|EDK22252.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 403

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 273/410 (66%), Gaps = 22/410 (5%)

Query: 42  QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           QL  +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE 
Sbjct: 2   QLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVES 61

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV----------GKTATSNTREVF 151
           ++RDL + A+N+V+  +R++ +++     E +IL+ L+           +    N+ E  
Sbjct: 62  MVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKM 121

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIR 209
           R KLR+G++ +  I+IE++    D +N ++P   GA   I+       KV+G G KK  +
Sbjct: 122 RTKLRNGDLDESTIEIEISQNMFD-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKK 173

Query: 210 MSVQKCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVS 267
               K     +++E+ ++++D +++  ++++  EN GI+F+DE DKI V+  + N    S
Sbjct: 174 EMKIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPS 233

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           +EGVQRDLLP+VEGS+V TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L 
Sbjct: 234 KEGVQRDLLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELD 293

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL+      ILT  +++L+ QY +L+KTE + L+F +++I  +A +A   N  + DIGAR
Sbjct: 294 SLDDKALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGAR 353

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL TV+E++LED+SF A +   K  V+D + V   +GD     D+  +IL
Sbjct: 354 RLHTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403


>gi|154332754|ref|XP_001562639.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134059642|emb|CAM41762.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 503

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/478 (41%), Positives = 283/478 (59%), Gaps = 56/478 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+QL  A+LR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDAELRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R   E+ R  
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 120 -------DEVREQASINAEERILD-ALVG-----------------------KTATSNTR 148
                  D V    S++   R +D +L+G                       +    +T 
Sbjct: 156 EALNMALDTVYSAWSVSQRMRGMDRSLLGAGKAEEGTSAAADDSASESEESPQQPQPHTF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG---ASVGILNLSELFSKVMG-SGR 204
           E FR+  ++  I D  + I++    + ++     GG    SVG+L         +G  G 
Sbjct: 216 EYFREHYQEEPIKDDMVTIDITAPQA-VTKPPKEGGIDLQSVGML---------LGLGGE 265

Query: 205 KKKIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
            K++++SV K      P   ++  D+LID  +V+  +  + E  G++F+DE DK+VA  S
Sbjct: 266 PKRLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVIFVDEIDKVVAEPS 325

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGR 319
                VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR
Sbjct: 326 SANADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGR 385

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PVRV L++L ++DFR ILT+ + NL+ Q +E+MKTE I + FTED ++ LA V   +N+
Sbjct: 386 LPVRVELQALTENDFRRILTEPKFNLLRQQEEMMKTEKIEVVFTEDGVNELAKVTCAVNA 445

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL T++ERV++  SF+  D + K V I+A+ V           ++  ++L
Sbjct: 446 QGQNIGARRLNTILERVMDPYSFNCEDYEGKKVEINAKVVHEATERLQKNVNLAKYLL 503


>gi|302769446|ref|XP_002968142.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii]
 gi|300163786|gb|EFJ30396.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii]
          Length = 510

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/473 (39%), Positives = 280/473 (59%), Gaps = 62/473 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53
            +P ++V+ LDR+I+GQ  AKRAVA+AL              NRWRR ++P+  R+E++P
Sbjct: 58  LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI +
Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177

Query: 114 VRESRRDEVREQASINAEERILDALVGKTAT-------SNTREVFRKKLRDGEISDKEID 166
            RE  R  + ++     E RILDAL+G T         +++ E  RK  + GEI ++++ 
Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++V +        ++ GG  + I +L     K + S + ++  ++V +    L   E ++
Sbjct: 238 LDVPEGGRVRVPIEVTGGG-LPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296

Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266
            +  D + +D+I                   Q  E+ GIVF+DE DKIV       G   
Sbjct: 297 HLQSDQIIKDAIRVHASVFDLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           S EGVQRDLLP++EG                   SGAFH  +P+D+L E+QGR P+RV L
Sbjct: 357 SAEGVQRDLLPIIEG-------------------SGAFHSCKPSDMLAELQGRLPIRVEL 397

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA--VNLNSTVGDI 384
           K L ++D   ILT+ E N+I Q + LM TE + L F++D+I  LA+VA   ++N+++ +I
Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TV+E+V+EDISF+A +   +   ID + VR  +G+   +TD+  F+L
Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVRDAVGELLKKTDLSKFVL 510


>gi|146078307|ref|XP_001463511.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania
           infantum JPCM5]
 gi|25956190|emb|CAD19161.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|25956192|emb|CAD21590.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|25956194|emb|CAD21591.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|134067597|emb|CAM65876.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           infantum JPCM5]
 gi|322496930|emb|CBZ32000.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 503

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 197/478 (41%), Positives = 279/478 (58%), Gaps = 56/478 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+QL  ADLR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R   E+ R  
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 120 -------DEVREQASINAEERILDALVGKTATS------------------------NTR 148
                  D V    S++   R +D  +  T  +                        +  
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQPQQQQHNF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG---ASVGILNLSELFSKVMG-SGR 204
           E FR+   D  I++  + I++ +     +     GG    SVG+L         +G  G 
Sbjct: 216 EYFREHYLDEPITNDMVTIDI-NAPQAPTKPPKEGGIDLQSVGML---------LGLGGE 265

Query: 205 KKKIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
            K++++SV K      P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S
Sbjct: 266 PKRLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPS 325

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGR 319
                VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR
Sbjct: 326 SANADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGR 385

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PVRV L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS
Sbjct: 386 LPVRVELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNS 445

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL T++ERV++  SF+  + + K V I+A+ VR          ++  ++L
Sbjct: 446 QGQNIGARRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503


>gi|302773914|ref|XP_002970374.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii]
 gi|300161890|gb|EFJ28504.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii]
          Length = 521

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 182/458 (39%), Positives = 270/458 (58%), Gaps = 62/458 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53
            +P ++V+ LDR+I+GQ  AKRAVA+AL              NRWRR ++P+  R+E++P
Sbjct: 58  LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI +
Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177

Query: 114 VRESRRDEVREQASINAEERILDALVGKTAT-------SNTREVFRKKLRDGEISDKEID 166
            RE  R  + ++     E RILDAL+G T         +++ E  RK  + GEI ++++ 
Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++V +        ++ GG  + I +L     K + S + ++  ++V +    L   E ++
Sbjct: 238 LDVPEGGRVRVPIEVTGGG-LPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296

Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266
            +  D + +D+I                   Q  E+ GIVF+DE DKIV       G   
Sbjct: 297 HLQSDQIIKDAIRVHASVFGLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           S EGVQRDLLP++EG                   SGAFH  +P+D+L E+QGR P+RV L
Sbjct: 357 SAEGVQRDLLPIIEG-------------------SGAFHSCKPSDMLAELQGRLPIRVEL 397

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA--VNLNSTVGDI 384
           K L ++D   ILT+ E N+I Q + LM TE + L F++D+I  LA+VA   ++N+++ +I
Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           GARRL TV+E+V+EDISF+A +   +   ID + V  H
Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVTGH 495


>gi|281494437|ref|NP_980167.2| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           10987]
 gi|290782531|gb|AAS42775.2| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus ATCC 10987]
          Length = 393

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/398 (41%), Positives = 250/398 (62%), Gaps = 38/398 (9%)

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 1   MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 60

Query: 133 RI-----------------LDALVGKTATSNT-------------REVFRKKLRDGEISD 162
           R+                 L+ L G    SN              R+   +KL  G + D
Sbjct: 61  RLVEIJVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 120

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219
           + + IEV +  S  S FD+  G  +  + ++  F   +GS    + KK ++SV++    L
Sbjct: 121 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 176

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+V
Sbjct: 177 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 235

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL 
Sbjct: 236 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 295

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED
Sbjct: 296 EPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 355

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 356 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 393


>gi|1359912|emb|CAA59020.1| heat shock induced protein HtpO [Lactobacillus leichmannii]
          Length = 391

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/389 (43%), Positives = 238/389 (61%), Gaps = 38/389 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153
             A                         E I   L G   +  T EV            +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV       +N        +G+   S L    M   +K K  + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPK--ANPMGDMMGQMGMDMSSMLGD--MLPKKKVKRTLPVS 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDF 362
           F  IL D +++L+ QY  L+K +G+ L F
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVF 389


>gi|218510050|ref|ZP_03507928.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli Brasil
           5]
          Length = 209

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 171/209 (81%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D + + R++++  EN GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKY
Sbjct: 1   DNEVIQREAVRSTENDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKY 60

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIASGAFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI Q
Sbjct: 61  GPVKTDHILFIASGAFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQ 120

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ LM+TE + LDFTED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D  
Sbjct: 121 YRALMETESLSLDFTEDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRS 180

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA YVR H+GD    TD+  FIL
Sbjct: 181 GTAITIDAAYVREHVGDLAQNTDLSRFIL 209


>gi|157864974|ref|XP_001681195.1| ATP-dependent hsl protease ATP-binding subunit hslU; heat shock
           protein HslVU, ATPase subunit HslU
 gi|68124490|emb|CAJ02387.1| putative ATP-dependent hsl protease ATP-binding subunit hslU
           [Leishmania major strain Friedlin]
          Length = 504

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 196/476 (41%), Positives = 276/476 (57%), Gaps = 51/476 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+QL  ADLR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLRDADLRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R   E+ R  
Sbjct: 96  GKTEISRRMARITNAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 120 -------DEVREQASINAEERILDALVGKTATS-------------------------NT 147
                  D V    S++   R +D  +  T  +                         + 
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQQQQQQQHN 215

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG-ASVGILNLSELFSKVMGSGRKK 206
            E FR+   D  I++  + I       DI+    P   A  G ++L  +   +   G  K
Sbjct: 216 FEYFREHYLDEPITNDMVTI-------DINAPQAPTKPAKEGGIDLQSVGMLLGLGGEPK 268

Query: 207 KIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           ++++SV K      P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S  
Sbjct: 269 RLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSA 328

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFP 321
              VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR P
Sbjct: 329 NADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLP 388

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           VRV L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS  
Sbjct: 389 VRVELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQG 448

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +IGARRL T++ERV++  S +  + + K V I+AE VR          ++  ++L
Sbjct: 449 QNIGARRLNTILERVMDPYSCNCEEYEGKRVEINAEMVREATEKLQKNVNLAKYLL 504


>gi|209882757|ref|XP_002142814.1| heat shock protein HslVU, ATPase subunit HslU [Cryptosporidium
           muris RN66]
 gi|209558420|gb|EEA08465.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Cryptosporidium muris RN66]
          Length = 608

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 274/479 (57%), Gaps = 49/479 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           SP +IV  LD YIIGQ  AKRAVA AL NR RR+++    LR  ++PKNILL+GPTGVGK
Sbjct: 130 SPSDIVQYLDEYIIGQTKAKRAVANALINRLRRKKIKDVSLRSSIIPKNILLIGPTGVGK 189

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++   APFIKVE T+FTE+G+ G++V+ II+DL ++++   +   + E+RE  
Sbjct: 190 TEIARRLSQFVDAPFIKVEATRFTEVGFHGKDVDNIIKDLAEISLKRQKLKLQSEMREFV 249

Query: 127 SINAEERILDALVGKTAT------SNTREVFRKKLRDGEISDKEIDIEVAD-----TSSD 175
               E+++L+A++   +       +N    + + +R G ++DK IDI + D         
Sbjct: 250 EKIVEKKLLEAILISLSISPSSISTNEWFFWLQHIRHGYLNDKVIDICIPDGLHLNKYKS 309

Query: 176 ISNFDIPGGASVGILNL---------------------SELFSKVMGSGRK--------- 205
           I N +     + GI N                      +  F+       K         
Sbjct: 310 ICNLNEYSKDNNGIFNFNFSDDVYNIDSNNIDEKSSITTNYFTNRHSGNLKYSNNSVENQ 369

Query: 206 --KKIRMSVQKCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVFLDEFDKI-VARDS 260
               I+++V +    L+++E + ++  D + + + +I+  E  GIVF+DE DKI + R+S
Sbjct: 370 VSNHIKVTVAEARSILIQNEINSILLQDSEFLMKRAIESTEQEGIVFIDEIDKICIKRNS 429

Query: 261 G-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
             NG   S EGVQRDLL L+EG+ V+TK G + TD ILFIASGAFH  + +D++ E+QGR
Sbjct: 430 HFNGPDASSEGVQRDLLSLIEGTVVATKIGDVKTDDILFIASGAFHNVKSSDMIAELQGR 489

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            P++  L++L  +D+  IL + + +L+ QY  L+  E I L FT+DSI+ +A +A  LNS
Sbjct: 490 LPIKAELEALVYTDYIRILKEPKYSLLKQYSALLDAENIYLTFTDDSIEEMARIAFELNS 549

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL  ++E V EDI+F+    Q  +++ ID  YV   +       D+  +IL
Sbjct: 550 YTENIGARRLHMIVEAVTEDITFNTDKYQLNSIIFIDKSYVINQLNSLILRYDLQKYIL 608


>gi|290977973|ref|XP_002671711.1| predicted protein [Naegleria gruberi]
 gi|284085282|gb|EFC38967.1| predicted protein [Naegleria gruberi]
          Length = 634

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/469 (36%), Positives = 269/469 (57%), Gaps = 74/469 (15%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRD--ELMPKNILL 58
            +P+EIV+ LD++I+GQ+DAK+AV++ALRNR+RR+ L         L D  E++PKNIL+
Sbjct: 164 LTPQEIVNCLDKHIVGQKDAKKAVSVALRNRYRRKILIDWAKSEKTLLDPSEIIPKNILM 223

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +G TG GKT I+RRLA+L  APF+KVE TK+TE+GY GR+V+ I RDLVDV+IN++R + 
Sbjct: 224 IGSTGCGKTEIARRLAKLVSAPFLKVEATKYTELGYHGRDVDTIARDLVDVSINVLRNNI 283

Query: 119 RDEVR------------EQASINAEE--------------RILDALVGKTATSNTR---- 148
            D  +            EQ     EE              RI+  ++G    +N R    
Sbjct: 284 TDLFKQFLNRPPSSTPSEQEEGTLEEPDLFGSYLQQLIEYRIIHLMIGTKNIANLRNGTI 343

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSS----------------------DISNFDIPGGAS 186
           + +   LR+GE+ D++I++ + +  S                      D S F +P    
Sbjct: 344 KDYLNMLRNGELDDRKIEVSMPEKKSSLGLSQFSDVFDAVKGSFGSSLDNSKFSMPD--- 400

Query: 187 VGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             + NLS+  + +      +   + KK+ M++++    L+  E D+ ++      ++ ++
Sbjct: 401 --VANLSDHQTPLDSMLGQLNPQKYKKVEMTIKEAKVRLVELEMDKFLNSPLFIEEARKI 458

Query: 241 VENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            E+ GIVF+DE DKI        +    S EGVQRDLLPL+EG +++TKYG + TDH+LF
Sbjct: 459 AESDGIVFIDEIDKICGSPEKKAVQGDASGEGVQRDLLPLLEGCTINTKYGPVKTDHVLF 518

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLN-KSDFRLILTDTESNLILQYKELMKTEG 357
           IASGAFH  +P+DL+ E QGR PVR+ L +LN   +   +LT  E NL+ Q   LM +EG
Sbjct: 519 IASGAFHQQKPSDLMSEFQGRLPVRIMLTALNTPEELYQVLTMPEFNLVRQNISLMNSEG 578

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           I L F++ +   +A+ +   N+   ++GARRL  ++E+V+++I   A +
Sbjct: 579 ISLVFSDAANREIANFSALCNAGNDNLGARRLIGIIEKVIDEIRRCAKE 627


>gi|196017997|ref|XP_002118704.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens]
 gi|190578418|gb|EDV18809.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens]
          Length = 330

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 221/330 (66%), Gaps = 5/330 (1%)

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI---EV 169
           +VR+    EV+ +A   A+ +++D LVGK A+ NT+ ++ KKL   E+ D+E+ I   E 
Sbjct: 1   MVRDDFYIEVKSKALYEAKLKLVDCLVGKEASENTKNIYLKKLDAKELDDREVKISIDEQ 60

Query: 170 ADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +       FD+PG  G+ +G++N+ ++  K  G+ ++K +++ + +    L++ E+++L
Sbjct: 61  PNKGQSFPTFDVPGMPGSQMGVVNIGDMLGKTFGAKKQKLVKLKIPEAIKHLIKQETEKL 120

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ID   +   +I++ E  GIVFLDE DKI   +      ++REGVQRDLLPL+EG+ ++TK
Sbjct: 121 IDEQLIIDKAIKITEEEGIVFLDEIDKIAGGNVNKKNDINREGVQRDLLPLIEGTIINTK 180

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I T+HILFIASGAFH++RP+DLLPE+QGR P+RV L  L+K D   IL + E++L  
Sbjct: 181 YGPIKTNHILFIASGAFHLARPSDLLPELQGRLPIRVELSPLSKDDLLKILKEPENSLPK 240

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTEG+ L F E  +  +A  A ++N+ V +IGARRL T++E++LE++SF+A+++
Sbjct: 241 QYSELLKTEGVNLKFAESGLKCIAKYAAHINNEVENIGARRLYTLLEKILEEVSFTANEI 300

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + KT+ IDA++V  ++       D+  FIL
Sbjct: 301 KGKTINIDAKFVEKNLDKITLSEDLSKFIL 330


>gi|163785493|ref|ZP_02180085.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879239|gb|EDP73151.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 283

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/282 (51%), Positives = 200/282 (70%), Gaps = 14/282 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+P++IV EL++Y+IGQ +AK++VAIALRNRWRRQQLP DLRDE++PKNIL++GPTGVGK
Sbjct: 4   FTPKQIVEELNKYVIGQYEAKKSVAIALRNRWRRQQLPEDLRDEVVPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+L + +  +V+E +  EV E+A
Sbjct: 64  TEIARRLANLVKAPFIKVEATKFTEVGYVGRDVEAIIRELAESSFKMVKEEKMAEVEEKA 123

Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AEE+ILD LV             +T  S  RE FR+ LR+G++ D+ ++IEV +  +
Sbjct: 124 KKLAEEKILDYLVPRKIRRFSNIEENETEESPAREKFREMLREGKLDDRIVEIEVEEKPT 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L +LFS +  S +KK+ +M+V+  +  L + E+++LIDMD V 
Sbjct: 184 VVGGVIAPGMEDIE-NQLKDLFSSLAPS-KKKRRKMTVKDAFKYLKQQEAEKLIDMDEVA 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            ++I+  EN GIVF+DE DK+  + SG+G  VSREGVQRDLL
Sbjct: 242 SEAIRRAENLGIVFIDEIDKVAGKSSGSGPDVSREGVQRDLL 283


>gi|294874673|ref|XP_002767043.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative
            [Perkinsus marinus ATCC 50983]
 gi|239868471|gb|EEQ99760.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative
            [Perkinsus marinus ATCC 50983]
          Length = 1405

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 171/467 (36%), Positives = 263/467 (56%), Gaps = 39/467 (8%)

Query: 8    SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            +P+++V  LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GK
Sbjct: 941  APKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGCGK 1000

Query: 67   TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
            T I+RRLA + GAP +KV  TK+TE+G++G + + +I +L D + ++ R+    EV+ +A
Sbjct: 1001 TEIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEA 1060

Query: 127  SINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
               A E +  + +      G+ + +  +++  K+  D    D EI+IE   T     +  
Sbjct: 1061 RQLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKE--DPRTMDTEIEIESHLTHPAPIDPS 1118

Query: 181  IPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
             PGG      G     +  S    SGR       + K     M +  + L       RD+
Sbjct: 1119 RPGGIFDGGEGSRGRKDQASPSPVSGRDVADGRHLYKPGTNRMHNAEEALRWSKLTVRDA 1178

Query: 238  IQMV-ENY-----------------------GIVFLDEFDKIVA--RDSGNGIGVSREGV 271
            + +V E+Y                       G+VF+DEFDK+++  R++ +G G  R GV
Sbjct: 1179 MSLVTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGV 1238

Query: 272  QRDLLPLVEGSSVST-KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
            Q++LL L+EG+ V+T + G I+T+HILFI +GAF  S+PA ++PE+QGR P+R  LK L 
Sbjct: 1239 QKELLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLT 1298

Query: 331  KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
              DF  ILT     L +Q + L+K EG+ + F  +++  +A  A  LN +  + GARRLQ
Sbjct: 1299 TEDFYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQ 1358

Query: 391  TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +VM  +LE+I F A       V ID + V+  +    +E+D+  +++
Sbjct: 1359 SVMSTLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTESDLSKYVI 1405


>gi|218679700|ref|ZP_03527597.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CIAT
           894]
          Length = 191

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 160/191 (83%)

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGAFHV
Sbjct: 1   VFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGAFHV 60

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           S+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+FT+D+
Sbjct: 61  SKPSDLLPELQGRLPIRVELRALNKEDFRRILTETEASLIRQYRALMETERLSLEFTDDA 120

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H+GD 
Sbjct: 121 IDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAITIDAAYVREHVGDL 180

Query: 427 PSETDMYHFIL 437
              TD+  FIL
Sbjct: 181 AQNTDLSRFIL 191


>gi|294877694|ref|XP_002768080.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Perkinsus marinus ATCC 50983]
 gi|239870277|gb|EER00798.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Perkinsus marinus ATCC 50983]
          Length = 567

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 263/467 (56%), Gaps = 39/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+++V  LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GK
Sbjct: 103 APKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGSGK 162

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA + GAP +KV  TK+TE+G++G + + +I +L D + ++ R+    EV+ +A
Sbjct: 163 TEIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEA 222

Query: 127 SINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
              A E +  + +      G+ + +  +++  K+  D    D EI+IE   T     +  
Sbjct: 223 RQLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKE--DPRTMDTEIEIESHLTHPAPIDPS 280

Query: 181 IPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
            PGG      G     +  S    SGR       + K     + +  + L       RD+
Sbjct: 281 RPGGIFDGGEGSRGRKDQASPSPVSGRDVADGRQLYKPGTNRLHNAEEALRWSKLAVRDA 340

Query: 238 IQMV-ENY-----------------------GIVFLDEFDKIVA--RDSGNGIGVSREGV 271
           + +V E+Y                       G+VF+DEFDK+++  R++ +G G  R GV
Sbjct: 341 MSLVTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGV 400

Query: 272 QRDLLPLVEGSSVST-KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           Q++LL L+EG+ V+T + G I+T+HILFI +GAF  S+PA ++PE+QGR P+R  LK L 
Sbjct: 401 QKELLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLT 460

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT     L +Q + L+K EG+ + F  +++  +A  A  LN +  + GARRLQ
Sbjct: 461 TEDFYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQ 520

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +VM  +LE+I F A       V ID + V+  +    +++D+  +++
Sbjct: 521 SVMSTLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTKSDLSKYVI 567


>gi|301632118|ref|XP_002945138.1| PREDICTED: ATP-dependent hsl protease ATP-binding subunit hslU-like
           [Xenopus (Silurana) tropicalis]
          Length = 490

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 197/296 (66%), Gaps = 2/296 (0%)

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
            A S  R+VFRKKLR+G++ DKEI+I++A+    +     P G       L  +FS+ MG
Sbjct: 197 AADSTARQVFRKKLREGQLDDKEIEIDLAEARPQLEIMG-PAGMEEMAEQLRGMFSQ-MG 254

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
             R+K  ++ +      L  + + +L++ D +   ++   E  GIVF+DE DK+ AR   
Sbjct: 255 QERRKTRKLKIADALKLLTEEAAAKLVNEDEIKTRALANAEQNGIVFIDEIDKVAARQET 314

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
           +G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP
Sbjct: 315 SGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFP 374

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +RV L SL+  DF  ILT T ++L+ QY+ L+ TEG+ L+FT + I  LA +A  +N   
Sbjct: 375 IRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALEFTPEGITRLAHIAFEVNERT 434

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +IGARRL TVMER+L+++SF A++   +TVVIDA YV   +     + D+  FIL
Sbjct: 435 ENIGARRLSTVMERLLDEVSFDAANRAGQTVVIDAAYVNERLQSLSQDEDLSRFIL 490


>gi|289811631|ref|ZP_06542260.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 296

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/292 (49%), Positives = 197/292 (67%), Gaps = 13/292 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+            +   S  R+ FRKKLR+G++ DKEI+I +A     
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VS +
Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSNQ 293


>gi|257457891|ref|ZP_05623050.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema
           vincentii ATCC 35580]
 gi|257444604|gb|EEV19688.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema
           vincentii ATCC 35580]
          Length = 296

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/297 (47%), Positives = 212/297 (71%), Gaps = 6/297 (2%)

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-PGGASVGILN--LSELFSKVMG 201
           S TRE FRK LRDG+  D+ +++ V    S + +F+I  GG+++  L   +S + S +MG
Sbjct: 2   SGTREKFRKMLRDGKFEDRMVEVSV--QQSGMPSFEIFAGGSNMEDLESAMSNISSMLMG 59

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DS 260
           +GR K+   SV++    +M D+ D+L+D D +  ++ + VE  GI+F+DE DK+ ++ + 
Sbjct: 60  AGRNKRKTTSVKEARTIIMDDQLDKLVDHDKIVEEAKERVEQMGIIFIDEIDKVASKSER 119

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            +GI VSREGVQRD+LP+VEGS V+TK+G I+T HILFIA+GAF +S+P+DL+PE QGRF
Sbjct: 120 SSGIDVSREGVQRDILPIVEGSKVNTKFGVIDTRHILFIAAGAFSISKPSDLIPEFQGRF 179

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L+SL+  DF+ IL + ++ L  QYK L++TEG+ + FT+D+ID ++++A  +NST
Sbjct: 180 PLRVELESLHAGDFKRILLEPKNALTKQYKALLETEGVTVVFTDDAIDRMSNLAAEVNST 239

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +IGARRL T+ME +LEDISF+AS++ EK V ID  YV   + D   + D+  +IL
Sbjct: 240 MENIGARRLHTIMEMLLEDISFNASNMTEKNVEIDRAYVDERLKDIVQDQDLSRYIL 296


>gi|153803829|ref|ZP_01958415.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae
           MZO-3]
 gi|124120635|gb|EAY39378.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae
           MZO-3]
          Length = 287

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/286 (52%), Positives = 195/286 (68%), Gaps = 13/286 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF  + G   KKK +M ++     L+ +E+ +L++ + +  
Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDT-KKKRKMKIKDALKALVEEEAAKLVNQEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
            +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG
Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEG 287


>gi|257140628|ref|ZP_05588890.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
          Length = 476

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 211/305 (69%), Gaps = 18/305 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L      VG  A+        + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290
           V   ++Q VE  GIVFLDE DKI +R+  G     VSR+GVQRDLLPLVEG++++TK G 
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGEAAARVSRQGVQRDLLPLVEGTTINTKCGM 298

Query: 291 INTDH 295
            +  H
Sbjct: 299 EDRSH 303


>gi|213027519|ref|ZP_03341966.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 278

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/280 (45%), Positives = 190/280 (67%), Gaps = 2/280 (0%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ DKEI+I +A     +     PG   +    L  +F   +G  ++K  ++ ++    
Sbjct: 1   GQLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMK 58

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLP
Sbjct: 59  LLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLP 118

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           LVEG +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  I
Sbjct: 119 LVEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERI 178

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+  +++ +QYK LM TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++
Sbjct: 179 LTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLM 238

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+IS++ASDL  + + IDAEYV  H+    ++ D+  FIL
Sbjct: 239 EEISYNASDLHGQNITIDAEYVSKHLDALVADEDLSRFIL 278


>gi|38046581|gb|AAR09151.1| ATP-dependent hslVU protease [Mannheimia glucosida]
          Length = 301

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 201/299 (67%), Gaps = 3/299 (1%)

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
           V ++  ++TR+ FRKKLR+G++ DKEI+I+VA   S       P G       L  LF  
Sbjct: 6   VQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG 63

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258
            M   + KK +M ++     ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI  +
Sbjct: 64  -MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKK 122

Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318
              +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QG
Sbjct: 123 GEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQG 182

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+ A  +N
Sbjct: 183 RLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVN 242

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
               +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D+  FIL
Sbjct: 243 EKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLRRFIL 301


>gi|2105144|gb|AAB57895.1| GufA [Treponema denticola]
          Length = 382

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 147/382 (38%), Positives = 231/382 (60%), Gaps = 47/382 (12%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALV-----GKTAT------------- 144
           IRDL+ V   +V+   +++++EQA  N EE +LD L+      KTA              
Sbjct: 1   IRDLMAVGYTMVKSEMQEKLKEQAEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASS 60

Query: 145 --------------------------SNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                                     S TRE FR  LR+ ++ DK +++ ++ +    + 
Sbjct: 61  GTTISLPSVSSTAQAEEHKAQNENDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTF 120

Query: 179 FDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               GG+++  +   +S + S +MG  + K+  +SV++    +M ++ DR++D D V  +
Sbjct: 121 EFFAGGSNMEDIESAMSNISSMLMGGRKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDE 180

Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           + Q VE  GI+F+DE DK+ +R D G G  VSREGVQRD+LP+VEGS VSTKYG ++T H
Sbjct: 181 AKQRVEQMGIIFIDEIDKVASRSDRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRH 240

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+G F VS+P++L+PE QGRFP+RV L++L+  DF+ IL + ++ L  QY EL++T
Sbjct: 241 ILFIAAGRFSVSKPSNLIPEFQGRFPLRVELEALHAEDFKRILLEPKNALTKQYAELLET 300

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F +++ID ++ +A ++NS   +IGARRL T+ME +LEDISF+AS++  +TV ID
Sbjct: 301 EGVKIEFLDEAIDRMSFLAADVNSKNENIGARRLHTIMEMLLEDISFNASEMGGETVKID 360

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   + D   + D+  +IL
Sbjct: 361 VAYVDERLKDIVQDQDLSRYIL 382


>gi|299135729|ref|ZP_07028913.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX8]
 gi|298601853|gb|EFI58007.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX8]
          Length = 535

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 34/331 (10%)

Query: 137 ALVGKTATSNTREV--FRKKLRDGEISDKEIDIEVADTSSD----ISNFDIPGGASVGIL 190
           A+V KT     RE    R++ R+G + D+ ++IE  D +      ISN       S G  
Sbjct: 209 AVVPKTDAERAREKDKLRQQFREGRLDDRMVEIETRDRNMPQIEFISNQPPEDMESSG-- 266

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            + E+ S + G  R +K  M V + +  L+++E  RL+DMD V R +I+ VE+ G+VFLD
Sbjct: 267 -MKEMLSGMFGQ-RTRKRPMKVVEAFDYLVQEEEGRLLDMDQVTRLAIERVEDSGMVFLD 324

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           E DKI  R+ G+G  +SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GAFHVS+P+
Sbjct: 325 EIDKIAGREGGHGPDISREGVQRDILPIVEGTTVNTKYGMVATDHILFIAAGAFHVSKPS 384

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DL+PE+QGRFP+RV L+ L  +DF  ILT+  ++L+ Q   L++TEG+ L+F  ++++ +
Sbjct: 385 DLIPELQGRFPIRVELQPLTVADFLRILTEPRASLVKQATALLETEGLTLEFAPEALEEM 444

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----------------------- 407
           A+ A  +N T  +IGARRL T+ME+VL++ISF A DL                       
Sbjct: 445 ANFAFQVNETTENIGARRLHTIMEKVLDEISFQAPDLVKATEPVAGAKPVPTLLERTTDK 504

Query: 408 -QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++ + ++ EYV+  + D     D+  +IL
Sbjct: 505 GTQRVLRVEREYVQQQVADIVKNQDLSRYIL 535



 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 117/141 (82%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y++GQ  AKRAVAIALRNR RRQ+LP +L +E+MPKNIL++G TGVG
Sbjct: 18  EMTPREIVAELDKYVVGQAAAKRAVAIALRNRSRRQKLPPELAEEIMPKNILMIGSTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+K+E +KFTE+GYVGR+VE ++RDLV++ I++VRE + DE+ ++
Sbjct: 78  KTEIARRLAKLTNSPFLKIEASKFTEVGYVGRDVESMVRDLVEIGIDMVREEKLDEIEDR 137

Query: 126 ASINAEERILDALVGKTATSN 146
           A + AE+R++D LV + + S 
Sbjct: 138 AELAAEDRLVDLLVQQGSPST 158


>gi|218288290|ref|ZP_03492589.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241649|gb|EED08822.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 260

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 183/257 (71%), Gaps = 2/257 (0%)

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           IPG  +  + NL E+   ++    KK+ +M+V++    L ++E+ +LIDMD V  ++I  
Sbjct: 6   IPGMGAESLGNLQEMLGNLLPKSTKKR-KMTVREARKVLTQEEAQKLIDMDAVTAEAIYR 64

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN+GI+F+DE DKI  R++ +G  VSREGVQRD+LP+VEGS+VSTKYG++ TD++LFI 
Sbjct: 65  AENHGIIFIDEMDKIAGRET-HGPDVSREGVQRDILPIVEGSTVSTKYGAVKTDYMLFIG 123

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAFHV++P+DL+PE+QGRFP+RV L+ L K DF  IL + E++LI QY  L++TEGI +
Sbjct: 124 AGAFHVAKPSDLIPELQGRFPIRVELEPLTKDDFVRILREPENSLIKQYTALLETEGIRV 183

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FT+++I+ +A++A  +N    +IGARRL T++E+VLED+SF A ++    + I   YV 
Sbjct: 184 EFTDEAIERIAEMAQKVNEETENIGARRLHTLVEKVLEDLSFEAPEIHLGEIKITRAYVD 243

Query: 421 LHIGDFPSETDMYHFIL 437
             +GD     D+  FIL
Sbjct: 244 EKLGDIVQNRDLSQFIL 260


>gi|167835014|ref|ZP_02461897.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
          Length = 280

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/282 (46%), Positives = 194/282 (68%), Gaps = 17/282 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L      VG  A++         TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +G G+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQR 273
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQR
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQR 280


>gi|291533221|emb|CBL06334.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas
           hypermegale ART12/1]
          Length = 208

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 161/208 (77%)

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           M+++ +++I++ E  GI+FLDE DK+  + S +G  VSREGVQRD+LP+VEGS+VSTKYG
Sbjct: 1   MESIAQEAIELAERNGIIFLDEIDKVAVKGSSSGPDVSREGVQRDILPIVEGSTVSTKYG 60

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF+ ILT+  + L+ QY
Sbjct: 61  QMKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLTEEDFKRILTEPTNALLKQY 120

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K L+ TEG+ ++FT+D+I+ LA VA  +N  + +IGARRL T+ME++LED+SF A +L+E
Sbjct: 121 KALLATEGVSIEFTDDAIERLAQVACEVNEQMENIGARRLHTIMEKLLEDLSFDAPELEE 180

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           K VVI+A+YV   +G      D+  FIL
Sbjct: 181 KNVVINADYVNEKLGGIVKNRDLSQFIL 208


>gi|4378705|gb|AAD19633.1| heat shock protein HslU [Buchnera aphidicola]
          Length = 277

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/278 (44%), Positives = 183/278 (65%), Gaps = 2/278 (0%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +KEI+I V  ++  +     PG   +    L  LF   +G  +K   R+ ++     L
Sbjct: 2   LDEKEIEINVLASTMGVEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLL 59

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ +LI+ + + +++I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLV
Sbjct: 60  KEEEAAKLINQEEIKKEAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLV 119

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +VSTKYG + TDHILFIASGAF  S P+DL+PE+QGR P++V L+ L  +DF  ILT
Sbjct: 120 EGCTVSTKYGMVKTDHILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILT 179

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  +++  QYK LMKTEG+ ++FT++ I  +A+ A  +N ++ +IGARRL T++E+++ED
Sbjct: 180 EPTASITAQYKALMKTEGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMED 239

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ISF+A D   KT+ I++EYV  H+    S  D+  FIL
Sbjct: 240 ISFNACDNVGKTIEINSEYVGKHLDQLISNEDLGRFIL 277


>gi|145636236|ref|ZP_01791905.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|145270401|gb|EDK10335.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
          Length = 222

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 159/219 (72%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+ DE+ +LI+ + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPL
Sbjct: 4   LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 63

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  IL
Sbjct: 64  VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 123

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  ++L  QYK LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++
Sbjct: 124 TEPHASLTEQYKALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 183

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ISFSASD+  +TV IDA YV   +G+     D+  FIL
Sbjct: 184 KISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 222


>gi|309804156|ref|ZP_07698234.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163739|gb|EFO66008.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 11V1-d]
          Length = 314

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/286 (42%), Positives = 190/286 (66%), Gaps = 8/286 (2%)

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           KL+ G + + E+ + V   +      D+ G      +++S L   +M    KK++R  +S
Sbjct: 35  KLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTLS 88

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREGV
Sbjct: 89  VKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGV 148

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L +
Sbjct: 149 QRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRE 208

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           SDF  IL D++++L+ QY+ L+KT+GI L FT+++I+ LA +A ++N    ++GARRL T
Sbjct: 209 SDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAINKLAKIAYDVNQGTDNVGARRLAT 268

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 269 ILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 314


>gi|315158155|gb|EFU02172.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0312]
          Length = 367

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 41/372 (11%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV------GKTATSN--------- 146
           ++RDLV+ AI IV + +   V  QA   A +R++  LV       K A  N         
Sbjct: 1   MVRDLVENAIQIVEKQQYSRVYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMF 60

Query: 147 -------------------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                               R+   ++L  G + ++E+ IE+ +    +   +  G   +
Sbjct: 61  NMAQQQQEAQEEVTEDIRTNRQTILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQM 119

Query: 188 GILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           GI +L+E    +     KKKI   ++V++    L+++ES ++++   +H ++I++ E+ G
Sbjct: 120 GI-DLNETLGAL---SPKKKIERTVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSG 175

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           I+F+DE DKI ++   N   VSREGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH
Sbjct: 176 IIFIDEIDKITSKSQQNSGEVSREGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFH 235

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +S+P+DL+PE+QGRFP+RV L  L   DF  ILT+  + LI QY  L+ TE + + FT++
Sbjct: 236 LSKPSDLIPELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKE 295

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +I+ LA +A ++N    +IGARRL T++ER+LED+ + A D+Q   + I   YV   + D
Sbjct: 296 AIERLAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLND 355

Query: 426 FPSETDMYHFIL 437
                D+  +IL
Sbjct: 356 IVQNEDLSRYIL 367


>gi|153824104|ref|ZP_01976771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|126518374|gb|EAZ75597.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
          Length = 215

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 158/215 (73%)

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ +L++ + +   +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS
Sbjct: 1   EAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGS 60

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +
Sbjct: 61  TVSTKHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPK 120

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L  QY  LMKTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF
Sbjct: 121 ASLTEQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISF 180

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            A++   +  VIDA YV+  +G+   + D+  FIL
Sbjct: 181 DATEKAGQAFVIDAAYVKARLGELVEDEDLSRFIL 215


>gi|221633581|ref|YP_002522807.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium
           roseum DSM 5159]
 gi|221156004|gb|ACM05131.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium
           roseum DSM 5159]
          Length = 474

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 154/219 (70%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L + E+ RL+D D V   +I+  E  GIVF+DE DK++ +D   G  VS EGVQRDLLP+
Sbjct: 256 LTQQEAQRLVDFDAVVEAAIKRAEESGIVFIDEIDKLITKDGEYGPDVSGEGVQRDLLPI 315

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS V T+YG + TDHILFIA+GAFH + P+DL+PE+QGRFP+RV L+ L + D   IL
Sbjct: 316 VEGSVVMTRYGPVRTDHILFIAAGAFHNASPSDLIPELQGRFPIRVELQRLTEDDLYRIL 375

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  E+ L  QY+EL+  EG+ L FTED +  +A +A  +NS   DIGARRL T+ME+V+E
Sbjct: 376 TVPENALTWQYRELLSVEGVELVFTEDGLREVARLAALVNSRAEDIGARRLATIMEKVIE 435

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ISF A +L  +TV IDA+YVR  +G   ++ D+  FIL
Sbjct: 436 EISFRAPELAGQTVCIDADYVRQRVGTIVADEDLSKFIL 474


>gi|149919851|ref|ZP_01908327.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
 gi|149819298|gb|EDM78731.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
          Length = 491

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 159/219 (72%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L + ++  L+D D V R++++  E  G+VFLDE DKI +R++  G  VSREGVQRDLLPL
Sbjct: 273 LAQQKARSLVDRDEVRREAVRRAEELGVVFLDEIDKICSRENARGADVSREGVQRDLLPL 332

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+VSTKYG + +DH+LFIA+GAFH+++ +DL+PE+QGRFP+RV L SL +++F  IL
Sbjct: 333 VEGSTVSTKYGPVRSDHVLFIAAGAFHMAKVSDLIPELQGRFPIRVELDSLGEAEFVQIL 392

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            DT+++L+ QY  L+ TEG+ ++F  D+I  LA VA   N  + +IGARRL TV+E+VL+
Sbjct: 393 RDTDNSLLKQYAALLGTEGVTVEFGADAIAELAKVAATANDQLENIGARRLHTVLEQVLD 452

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++SF AS++   TV I A YVR  IG    + D+   IL
Sbjct: 453 ELSFEASEVGNATVQITASYVRERIGGLLEDRDLSRHIL 491



 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 112/141 (79%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR  V ELDR++IGQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI++VGPTGVGK
Sbjct: 15  LTPRRAVKELDRFVIGQHKAKRAVAIALRNRWRRQQVEGDLRDEISPKNIIMVGPTGVGK 74

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+K+EV+KFTE+GYVGR+V+ +IRDLV++A  +VRE +  +V E A
Sbjct: 75  TEIARRLAKLTGAPFVKIEVSKFTEVGYVGRDVDSVIRDLVEMAAKLVREEKERDVWEAA 134

Query: 127 SINAEERILDALVGKTATSNT 147
              A+E ILD L+  +  + T
Sbjct: 135 RAEADEAILDILLPPSPGTGT 155


>gi|309805932|ref|ZP_07699962.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167671|gb|EFO69820.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 03V1-b]
          Length = 313

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 121/286 (42%), Positives = 189/286 (66%), Gaps = 8/286 (2%)

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211
           KL+ G + + E+ + V   +      D+ G      +++S L   +M    KK++R  +S
Sbjct: 34  KLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTLS 87

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREGV
Sbjct: 88  VKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGV 147

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L +
Sbjct: 148 QRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRE 207

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL T
Sbjct: 208 SDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLAT 267

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 268 ILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 313


>gi|218512710|ref|ZP_03509550.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli 8C-3]
          Length = 145

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/143 (77%), Positives = 127/143 (88%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGVG
Sbjct: 3   TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTR 148
           A ++AEER+LDALVG TA+  TR
Sbjct: 123 AHVSAEERVLDALVGTTASPATR 145


>gi|229552213|ref|ZP_04440938.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314399|gb|EEN80372.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           rhamnosus LMS2-1]
          Length = 311

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 122/294 (41%), Positives = 190/294 (64%), Gaps = 8/294 (2%)

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           N R    ++L  G + D+EI + V D        D+ G   +GI +LS+    +M    K
Sbjct: 24  NRRLSVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALM---PK 77

Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           KK+   M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D    
Sbjct: 78  KKVERTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTS 137

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSREGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+R
Sbjct: 138 GEVSREGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIR 197

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V LK L + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +
Sbjct: 198 VELKDLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDN 257

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 258 IGARRLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 311


>gi|33357692|pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357693|pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357694|pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357705|pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357706|pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357707|pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
          Length = 310

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 153/216 (70%), Gaps = 7/216 (3%)

Query: 229 DMDTVHRD-------SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           ++D++ RD       +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEG
Sbjct: 95  EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+ 
Sbjct: 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            ++L  QYK LM TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ IS
Sbjct: 215 HASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           FSASD+  +TV IDA YV   +G+     D+  FIL
Sbjct: 275 FSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 310



 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 89/104 (85%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107


>gi|228909653|ref|ZP_04073476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|228980435|ref|ZP_04140745.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|229025269|ref|ZP_04181689.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|229123342|ref|ZP_04252546.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228660118|gb|EEL15754.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228736022|gb|EEL86597.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|228779255|gb|EEM27512.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|228849942|gb|EEM94773.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|326941597|gb|AEA17493.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 218

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           +  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+
Sbjct: 1   MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL
Sbjct: 60  VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LE
Sbjct: 120 IEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218


>gi|255030307|ref|ZP_05302258.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes LO28]
          Length = 240

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 161/228 (70%)

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 13  VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 72

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 73  GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 132

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 133 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 192

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 193 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 240


>gi|229140470|ref|ZP_04269025.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
 gi|228643031|gb|EEK99307.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
          Length = 218

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           +  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+
Sbjct: 1   MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL
Sbjct: 60  VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LE
Sbjct: 120 IEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218


>gi|307264861|ref|ZP_07546423.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920119|gb|EFN50331.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 226

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 161/219 (73%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP+
Sbjct: 8   LESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPI 67

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           +EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K DF  IL
Sbjct: 68  IEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTKEDFIRIL 127

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E
Sbjct: 128 KEPKNALAKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFE 187

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++SF+A +L  + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 188 ELSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 226


>gi|257089962|ref|ZP_05584323.1| heat shock protein hslU [Enterococcus faecalis CH188]
 gi|256998774|gb|EEU85294.1| heat shock protein hslU [Enterococcus faecalis CH188]
          Length = 283

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/287 (41%), Positives = 187/287 (65%), Gaps = 7/287 (2%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210
           ++L  G + ++E+ IE+ +    +   +  G   +GI +L+E    +     KKKI   +
Sbjct: 2   EQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIERTV 56

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 57  TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 116

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 117 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 176

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 177 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 236

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 237 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 283


>gi|237838211|ref|XP_002368403.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49]
 gi|211966067|gb|EEB01263.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49]
          Length = 567

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%)

Query: 202 SGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
           SGR  + R ++V++   +LM+ E D +I  D V + +++ VE  GIVF+DE DKI ++  
Sbjct: 328 SGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGG 387

Query: 261 GNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318
            NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  RP+DLL E+QG
Sbjct: 388 RNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSDLLAELQG 447

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++ +A VA  +N
Sbjct: 448 RLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEIARVACEVN 507

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++V +IGARRL T++E+++EDI+F+A  +   T V +D E VR  +    ++TD   F+L
Sbjct: 508 ASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTKTDYTRFVL 567



 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 10/178 (5%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70
           +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+GPTGVGKT ++
Sbjct: 1   MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVA 60

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R  A   A
Sbjct: 61  RRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMRPAAEHRA 120

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           E +IL+AL+GK      +   R  LR G +  + + ++     S        GGA+ G
Sbjct: 121 ERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPS--------GGAASG 169


>gi|221484324|gb|EEE22620.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii GT1]
          Length = 883

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%)

Query: 202 SGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
           SGR  + R ++V++   +LM+ E D +I  D V + +++ VE  GIVF+DE DKI ++  
Sbjct: 644 SGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGG 703

Query: 261 GNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318
            NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  RP+DLL E+QG
Sbjct: 704 RNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSDLLAELQG 763

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++ +A VA  +N
Sbjct: 764 RLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEIARVACEVN 823

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++V +IGARRL T++E+++EDI+F+A  +   T V +D E VR  +    ++TD   F+L
Sbjct: 824 ASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTKTDYTRFVL 883



 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 122/185 (65%), Gaps = 9/185 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + +  P+ +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +   LR+++ PKNILL+GPTG
Sbjct: 310 SHSLCPQAMVEYLNRFIVGQVEAKRAVAVALRQRWRRRHVNERLREDITPKNILLIGPTG 369

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT ++RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R
Sbjct: 370 VGKTEVARRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMR 429

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
             A   AE +IL+AL+GK      +   R  LR G +  + + ++     S        G
Sbjct: 430 PAAEHRAERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPS--------G 480

Query: 184 GASVG 188
           GA+ G
Sbjct: 481 GAASG 485


>gi|58699714|ref|ZP_00374376.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533769|gb|EAL58106.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 199

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 156/200 (78%), Gaps = 3/200 (1%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           +DR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G TGVGKT I+RRLA+
Sbjct: 1   MDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVGKTEIARRLAK 60

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++A I AE+ I+
Sbjct: 61  LAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKKALILAEKTIV 120

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLS 193
           +++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIPG  G  VG++N++
Sbjct: 121 NSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMPGGQVGVMNVT 180

Query: 194 ELFSKVMGSGRKKKIRMSVQ 213
           E+  K M +G KK   ++VQ
Sbjct: 181 EIMGK-MFNGSKKTKTITVQ 199


>gi|221505697|gb|EEE31342.1| hsl and Clp protease, putative [Toxoplasma gondii VEG]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/248 (46%), Positives = 172/248 (69%), Gaps = 8/248 (3%)

Query: 194 ELFSKVMGS-GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
           ++   ++GS GR     ++V++   +LM+ E D +I  D V + +++ VE  GIVF+DE 
Sbjct: 123 KILEALLGSEGRN----LTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEI 178

Query: 253 DKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           DKI ++   NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  RP+
Sbjct: 179 DKICSKGGRNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPS 238

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DLL E+QGR P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++ +
Sbjct: 239 DLLAELQGRLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEI 298

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSE 429
           A VA  +N++V +IGARRL T++E+++EDI+F+A  +   T V +D E VR  +    ++
Sbjct: 299 ARVACEVNASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTK 358

Query: 430 TDMYHFIL 437
           TD   F+L
Sbjct: 359 TDYTRFVL 366



 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70
           +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+GPTGVGKT ++
Sbjct: 1   MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVA 60

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R  A   A
Sbjct: 61  RRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMRPAAEHRA 120

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEI 160
           E +IL+AL+G    + T +  RKKL   E+
Sbjct: 121 ERKILEALLGSEGRNLTVKEARKKLMQAEL 150


>gi|313619207|gb|EFR90974.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria
           innocua FSL S4-378]
          Length = 285

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 155/216 (71%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGVQRD+LP+
Sbjct: 63  LFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRDILPI 122

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L + DF  IL
Sbjct: 123 VEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKIL 182

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T++E++LE
Sbjct: 183 TEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLE 242

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
           D+ F A ++  +++ +   YV   +    +  D+ H
Sbjct: 243 DLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTH 278


>gi|116514249|ref|YP_813155.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275019|sp|Q04A05|HSLU_LACDB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116093564|gb|ABJ58717.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 464

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/235 (44%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 205 KKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           KKK++  + V +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N
Sbjct: 230 KKKVKRTLPVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRN 289

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
             GVSREGVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+
Sbjct: 290 SAGVSREGVQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPI 349

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L +L K DF  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    
Sbjct: 350 RVELNALTKDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTD 409

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 410 NIGARRLATILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|330722054|gb|EGG99974.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC2047]
          Length = 198

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/198 (55%), Positives = 145/198 (73%), Gaps = 1/198 (0%)

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +E  GIVFLDE DK+    S +G  VSREGVQRDLLPL+EGS+V+TK G I TDHILFIA
Sbjct: 1   MEQNGIVFLDEIDKVAKGSSASGGEVSREGVQRDLLPLIEGSTVNTKLGMIKTDHILFIA 60

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+ +++L  QY+ LM TEG  L
Sbjct: 61  SGAFHLSKPSDLIPELQGRLPIRVELNALSPEDFQRILTEPDASLTEQYQALMSTEGFKL 120

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            F++D I  +A+VA  +N    +IGARRL TVMER+LE +SF ASD  + K  V+ A+YV
Sbjct: 121 TFSDDGIKRIAEVAWQVNERTENIGARRLHTVMERLLETVSFEASDAGDNKETVVSADYV 180

Query: 420 RLHIGDFPSETDMYHFIL 437
             H+G+   + D+  +IL
Sbjct: 181 NDHLGELVQDEDLSRYIL 198


>gi|255994161|ref|ZP_05427296.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum
           ATCC 49989]
 gi|255993829|gb|EEU03918.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum
           ATCC 49989]
          Length = 511

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 190/294 (64%), Gaps = 6/294 (2%)

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-GASVGILNLSELFSKVMGSG 203
           +TRE  ++    G++ D+EI+  + +   S+I+  D+   G S+ + N+ E  S      
Sbjct: 222 HTREKIKELFYAGKLEDEEIEFTMENAPKSEINQLDLEDRGISIALGNIFENLS----PS 277

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           +K+K +  V +    L+  E+  +IDM+ + +++I+  EN GI+F+DE DKI +     G
Sbjct: 278 KKQKRKGKVSEARTLLINQEAQAMIDMEEIKKNAIENAENNGIIFIDEIDKIASSGYKGG 337

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
             VSREGVQRD+LP+VEGS V TKYG + T+HILFI +GAFH+S+ ++L+PE+QGRFP+R
Sbjct: 338 QDVSREGVQRDILPIVEGSVVKTKYGPVKTNHILFIGAGAFHISKVSELIPELQGRFPIR 397

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L +L++ + + IL + E+ +I Q  EL++TEG+ + FT+D+ID +A +A   N    +
Sbjct: 398 VDLDNLSEENLKRILVEPENAIIKQNIELLETEGVKVTFTDDAIDEIAKLAYIYNEQREN 457

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++++ LEDISF   D + K   IDA++++    D   + D+  FIL
Sbjct: 458 IGARRLHTIVDKTLEDISFEVPDEKIKDYTIDAKFIKEKFKDDLKDEDLDRFIL 511



 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 110/147 (74%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K T   +P+E V+ LD+YIIGQ DAK+ VAIA+RNR+RR +L  +++DE+ PKNIL+ GP
Sbjct: 6   KNTTVLTPKETVARLDKYIIGQDDAKKKVAIAMRNRYRRAKLSEEMQDEVTPKNILMKGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT I+RRLA+L  APFIKVE TKFTE+GYVGR+VE +IRDLV  ++  VR  + ++
Sbjct: 66  TGCGKTEIARRLAKLIDAPFIKVEATKFTEVGYVGRDVESMIRDLVTKSVMDVRMQKINK 125

Query: 122 VREQASINAEERILDALVGKTATSNTR 148
           V E+AS    E +++A+V K   +N +
Sbjct: 126 VNEKASKIVNEILINAIVEKYKKNNKQ 152


>gi|256750735|ref|ZP_05491620.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750318|gb|EEU63337.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 208

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 153/208 (73%)

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++EG +V TKYG
Sbjct: 1   MDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPIIEGCTVMTKYG 60

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV LK L K DF  IL + ++ L  QY
Sbjct: 61  PVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVTLKPLTKEDFIKILKEPKNALTKQY 120

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E++SF+A +L  
Sbjct: 121 QELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEELSFNAPELGG 180

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 181 QQIVITEEYVKEQLKDSLNKYEVNKYIL 208


>gi|153217715|ref|ZP_01951396.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 1587]
 gi|124113339|gb|EAY32159.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 1587]
          Length = 255

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 137/188 (72%), Gaps = 11/188 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPG 183
           +     PG
Sbjct: 184 VEIMAPPG 191


>gi|153824210|ref|ZP_01976877.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33]
 gi|126518268|gb|EAZ75493.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33]
          Length = 228

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 136/188 (72%), Gaps = 11/188 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA  PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +A
Sbjct: 64  TEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LDAL+            K   S+TR+VFRKKLR+G+++DKEI+I VA     
Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183

Query: 176 ISNFDIPG 183
           +     PG
Sbjct: 184 VEIMAPPG 191


>gi|145636237|ref|ZP_01791906.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|145270402|gb|EDK10336.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
          Length = 223

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 139/204 (68%), Gaps = 11/204 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183

Query: 176 ISNFDIPGGASVGILNLSELFSKV 199
                 P G       L  LF  +
Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQNL 207


>gi|47094323|ref|ZP_00232023.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 4b H7858]
 gi|47017294|gb|EAL08127.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 4b H7858]
          Length = 192

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 142/192 (73%)

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           ++F+DE DKI +++ G    VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH
Sbjct: 1   MIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFH 60

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +S+P+DL+PE+QGRFP+R+ L  L + DF  ILT+ ++ LI QYK L+KTEGI L FT++
Sbjct: 61  MSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKE 120

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +++ +A++A  +N    +IGARRL T++E++LED+ F A ++  +++ +   YV   +  
Sbjct: 121 AVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAP 180

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 181 IMQNKDLTQFIL 192


>gi|38046595|gb|AAR09162.1| ATP-dependent hslVU protease [Mannheimia ruminalis]
          Length = 186

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 135/185 (72%)

Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL 312
           DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DL
Sbjct: 2   DKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDL 61

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           LPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+
Sbjct: 62  LPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAE 121

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDM 432
            A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D+
Sbjct: 122 SAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDL 181

Query: 433 YHFIL 437
             FIL
Sbjct: 182 SRFIL 186


>gi|38018230|gb|AAR08192.1| ATP-dependent hslVU protease [Mannheimia ruminalis]
          Length = 186

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 135/185 (72%)

Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL 312
           DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DL
Sbjct: 2   DKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDL 61

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           LPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+
Sbjct: 62  LPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAE 121

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDM 432
            A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D+
Sbjct: 122 SAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDESYVSEALNDVVENEDL 181

Query: 433 YHFIL 437
             FIL
Sbjct: 182 SRFIL 186


>gi|115379327|ref|ZP_01466436.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363672|gb|EAU62798.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
          Length = 219

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 147/216 (68%), Gaps = 24/216 (11%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQ++  DLR+E+ PKNI+++GPTGVGK
Sbjct: 4   FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE   ++V+ +A
Sbjct: 64  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 123

Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164
              AE+R+++ L G                           + RE  R +LR G + D+E
Sbjct: 124 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 183

Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKV 199
           +D+E +D++   + NF   G   VG+ NL +LF  +
Sbjct: 184 VDVETSDSAPTFLRNFTGHGMEEVGV-NLQDLFKNM 218


>gi|260577470|ref|ZP_05845419.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2]
 gi|259020314|gb|EEW23661.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2]
          Length = 185

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 138/187 (73%), Gaps = 2/187 (1%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           RR+QL  DLRDE+ PKNIL++GPTGVGKT ISRRLA+LA APF+KVE TKFTE+GYVGR+
Sbjct: 1   RRKQLADDLRDEVYPKNILMIGPTGVGKTEISRRLAKLARAPFLKVEATKFTEVGYVGRD 60

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           V+ IIRDLVD A+   R   R++V+ +A   AE+R+++A+ GK A   TRE+FR KL+ G
Sbjct: 61  VDSIIRDLVDAAMVETRARMREDVKARAFKAAEDRVIEAIAGKDAREQTREMFRGKLKRG 120

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E+ D  I++EVADTS+    FD  G   +G++NL +LF K+   GR +K +M+V + +  
Sbjct: 121 ELDDTVIELEVADTSNPFGAFDPTGQGQMGMMNLGDLFGKL--GGRSQKRKMTVAESHEL 178

Query: 219 LMRDESD 225
           L+ DE+D
Sbjct: 179 LISDEAD 185


>gi|159473805|ref|XP_001695024.1| ATP-dependent subunit of mitochondrial HslUV protease
           [Chlamydomonas reinhardtii]
 gi|158276403|gb|EDP02176.1| ATP-dependent subunit of mitochondrial HslUV protease
           [Chlamydomonas reinhardtii]
          Length = 460

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 11/242 (4%)

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
           K  + V +    L   E+++L+  + V R++++  E  GIVF+DE DKIV   SG  +  
Sbjct: 219 KKTLKVSEARSRLEEAEAEKLLSSEAVTREALRAAEQDGIVFIDEIDKIVEPSSGRVVSG 278

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
           GVS EGVQRDLLP++EG +V TK+G ++T+H+LFI SGAFH ++P+D+L E+QGR P+RV
Sbjct: 279 GVSSEGVQRDLLPIIEGCTVPTKHGPVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRV 338

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L  +DF  ILT+ ++N+I Q +EL+ TEG+ L FT+ ++ A A +A   N  + +I
Sbjct: 339 ELQGLTAADFHRILTEPDNNMIRQQQELLGTEGVRLTFTDGAVRAAASLAEQANRLLDNI 398

Query: 385 GARRLQTVMERVLEDISFS---------ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHF 435
           GARRL T++ERVL +ISF+         A+ L     V+D   V   + D   + D+  +
Sbjct: 399 GARRLHTILERVLAEISFTAPERAAEARAAGLDAFEYVVDEAMVHARLDDLLKKQDLSRY 458

Query: 436 IL 437
           +L
Sbjct: 459 VL 460


>gi|300214643|gb|ADJ79059.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           salivarius CECT 5713]
          Length = 205

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 137/201 (68%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+  EN GI+F+DE DKI ++   N   VSREGVQRD+LP+VEGS +STKYG I TDHI
Sbjct: 5   AIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQRDILPIVEGSQISTKYGLIKTDHI 64

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+  DF  ILT+  + L+ QY  ++ T+
Sbjct: 65  LFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVDDFVKILTEPNNALVKQYIAMIGTD 124

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I + FT ++I  +A+VA  LN    +IGARRL T++E++LED+ F   D+Q   + I  
Sbjct: 125 NIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTILEKLLEDLLFEGPDMQMGDIKITE 184

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   IG    + D+  +IL
Sbjct: 185 AYVNDKIGSIVEDKDLSQYIL 205


>gi|307264860|ref|ZP_07546422.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920118|gb|EFN50330.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 240

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 149/220 (67%), Gaps = 26/220 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVG--KTATSN------------------------TREVFRKKLRDGE 159
           A   AE+R++D ++G  K  T N                         RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
           + +  ++IEV DTS+ +       G+    +NL ++F+ +
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADI 222


>gi|160357931|emb|CAP19066.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           avellanae]
          Length = 277

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 133/184 (72%), Gaps = 1/184 (0%)

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +   +++ VE +GIVF+D
Sbjct: 9   QLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELKVKALEAVEQHGIVFID 67

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           E DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + TDHILFIASGAFH+S+P+
Sbjct: 68  EIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTDHILFIASGAFHLSKPS 127

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+KTEG+ ++F  D I  L
Sbjct: 128 DLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLKTEGLKIEFKPDGIKRL 187

Query: 371 ADVA 374
           A++A
Sbjct: 188 AEIA 191


>gi|255017245|ref|ZP_05289371.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL F2-515]
          Length = 181

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 133/181 (73%)

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
           +++ G    VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+
Sbjct: 1   SKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPEL 60

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
           QGRFP+R+ L  L + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  
Sbjct: 61  QGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQ 120

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFI 436
           +N    +IGARRL T++E++LED+ F A ++  +++ +   YV   +       D+  FI
Sbjct: 121 VNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFI 180

Query: 437 L 437
           L
Sbjct: 181 L 181


>gi|46198572|ref|YP_004239.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus
           HB27]
 gi|55980599|ref|YP_143896.1| ATP-dependent protease ATP-binding subunit HslU [Thermus
           thermophilus HB8]
 gi|46196194|gb|AAS80612.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermus
           thermophilus HB27]
 gi|55772012|dbj|BAD70453.1| heat shock protein HslU [Thermus thermophilus HB8]
          Length = 416

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 146/219 (66%), Gaps = 3/219 (1%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L    ++RLID + +  ++ +  +  GIVF+DE DK+  R+   G  VS EGVQRDLLP+
Sbjct: 201 LKNQHAERLIDKEELKEEARRRAQEEGIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPI 260

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEG+ VST+ G I+T+H+LFIA+GAFHV++P+DL+PE+QGRFP+RV L  L   +F  IL
Sbjct: 261 VEGTVVSTRIGPISTEHVLFIAAGAFHVAKPSDLIPELQGRFPIRVELSPLGPEEFYRIL 320

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + E++LI QY EL+K +G  L F ++++ A+A  A   N  + DIGARRL TV+E+VLE
Sbjct: 321 KEPENSLIRQYTELLKADGTELVFEDEALWAIAQAAHRANQELEDIGARRLATVLEKVLE 380

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++SF  +DL    V I   YV   +    +  D+  F+L
Sbjct: 381 EVSFQ-TDLGR--VEITRAYVEKRLEAVFASPDLTRFVL 416


>gi|320170276|gb|EFW47175.1| heat shock protein HslVU [Capsaspora owczarzaki ATCC 30864]
          Length = 732

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 139/210 (66%), Gaps = 7/210 (3%)

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           R   +RM  +     L   E+  L++   + R ++Q VE  GIVF+++ DKI      + 
Sbjct: 467 RPPVMRMRAKDALSLLAEMEASVLLNDTLIVRSAVQHVEQDGIVFIEDIDKICTPTPSST 526

Query: 264 IG-------VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
                     S E VQRDLLPL+EG+ VST +G + TDHILFIASG+F  S+P+DLLPE+
Sbjct: 527 SSSRRVVSEASYEPVQRDLLPLIEGTLVSTPFGPVRTDHILFIASGSFRSSQPSDLLPEL 586

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
           QGRFP+RV LK+L++SD   +LT  E+N+I Q  ELM+TEG+ L FT ++I  +A +A  
Sbjct: 587 QGRFPIRVQLKALSESDLYQLLTWPEANVIAQQVELMRTEGVALSFTAEAIREIARIAYE 646

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASD 406
           +N  V +IGARRL T++ERV+EDISFSA D
Sbjct: 647 VNGAVENIGARRLNTILERVVEDISFSAPD 676



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 100/142 (70%), Gaps = 2/142 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +IV+ELD++++GQ DAKRAVA+ALRNRWRR QLP ++RD ++PKNI+++G TGVGKT
Sbjct: 160 TPAQIVAELDKHVVGQVDAKRAVALALRNRWRRHQLPPNMRDVVVPKNIIMIGSTGVGKT 219

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVG--RNVEQIIRDLVDVAINIVRESRRDEVREQ 125
            I+RR+A+L  APFIKVE T++         +++E  I DLV +++   R   R +VR++
Sbjct: 220 EIARRMAKLTDAPFIKVEATRYIRSAAANDRQDIEHAIHDLVRLSVQAARTRTRAQVRDK 279

Query: 126 ASINAEERILDALVGKTATSNT 147
                E+RI+  ++ +    +T
Sbjct: 280 IHRAVEDRIIGDIIARRNAEST 301


>gi|270635177|ref|ZP_06222042.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270317475|gb|EFA28964.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 164

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 121/163 (74%), Gaps = 11/163 (6%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           LD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGKT I+RRLA+
Sbjct: 1   LDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGKTEIARRLAK 60

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A   AEERIL
Sbjct: 61  LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDAAEERIL 120

Query: 136 DALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDI 167
           DAL+                S+TR+ FRKKLR+G++ DKEI+I
Sbjct: 121 DALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEI 163


>gi|213022300|ref|ZP_03336747.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 171

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 124/168 (73%), Gaps = 11/168 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDK 163
              AEERILD L+            +   S  R+ FRKKLR+G++ DK
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDK 171


>gi|254756020|ref|ZP_05208051.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 178

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 129/177 (72%)

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            N + VSREGVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+P +QGRF
Sbjct: 2   SNSVDVSREGVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPXLQGRF 61

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L  L+  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N  
Sbjct: 62  PIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQD 121

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 122 TDNIGARRLHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 178


>gi|168054446|ref|XP_001779642.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668956|gb|EDQ55553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 293

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 20/293 (6%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRK 205
           E FR+  RDG + +++I +++ D  S +   +I G +  G+  L        K + S R 
Sbjct: 17  EAFRQLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVFRLPQMEKFLKSQRM 75

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGI 264
           +++ +++    P L   E ++ +++D + +D+I + E+ GIVF+DE DKIV   ++  G 
Sbjct: 76  ERMEITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDEIDKIVTNHETRYGA 135

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
             S EGVQRDLLP++EG  VS                 A    +  D+L E+QGR P+RV
Sbjct: 136 DASSEGVQRDLLPIIEGR-VSLPV--------------ACQSDKSTDMLAELQGRLPIRV 180

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            LK L + D   ILT+ E+N+I Q + LMKTE I L FT+D+I+ LA VA  +N +V +I
Sbjct: 181 ELKGLGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEELAKVAAEVNRSVDNI 240

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TV+ERV+EDISF A +   +T  ID E V+  +GDF  + D+  F+L
Sbjct: 241 GARRLHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKADLSRFVL 293


>gi|213584973|ref|ZP_03366799.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 167

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 121/164 (73%), Gaps = 11/164 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGE 159
              AEERILD L+            +   S  R+ FRKKLR+G+
Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQ 167


>gi|207109295|ref|ZP_03243457.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 191

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 133/179 (74%), Gaps = 3/179 (1%)

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEG 281
           SD L+D + +  + ++  E+ G++F+DE DKI   +++SG     S+EGVQRDLLP+VEG
Sbjct: 12  SDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKESGRQ-DPSKEGVQRDLLPIVEG 70

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S V+TKYGSI T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T
Sbjct: 71  SVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQT 130

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
           ++++I QY+ L+K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VL+ +
Sbjct: 131 KNSIIKQYQALLKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLKKL 189


>gi|229123343|ref|ZP_04252547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228660119|gb|EEL15755.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
          Length = 238

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 34/237 (14%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G T  SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G   G+  +   F   +GS   KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233


>gi|309807632|ref|ZP_07701576.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a]
 gi|308169129|gb|EFO71203.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a]
          Length = 173

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 126/171 (73%)

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
           +A D      VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE
Sbjct: 1   MAGDKNTTGQVSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPE 60

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGRFP+RV L  L +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A 
Sbjct: 61  LQGRFPIRVELNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAY 120

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++N    ++GARRL T++E++LEDI F   D+ E  + +  +YV   +G +
Sbjct: 121 DVNQGTDNVGARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGRY 171


>gi|229140471|ref|ZP_04269026.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
 gi|228643032|gb|EEK99308.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
          Length = 238

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 34/237 (14%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G   G+  +   F   +GS   KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233


>gi|228909654|ref|ZP_04073477.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|228849943|gb|EEM94774.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
          Length = 238

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 34/237 (14%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152
           +++A   A +R+++ LV                       + TS+T         R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G   G+  +   F   +GS   KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQG--TGMEQMGMNFQDALGSFMPKKTK 233


>gi|229025270|ref|ZP_04181690.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|228736023|gb|EEL86598.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
          Length = 238

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 34/237 (14%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152
           +++A   A +R+++ LV                 G    SN              R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           +KL  G + D+ + IEV +  S  S FD+  G   G+  +   F   +GS   KK +
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233


>gi|228980436|ref|ZP_04140746.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|228779256|gb|EEM27513.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|326941598|gb|AEA17494.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 34/237 (14%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152
           +++A   A +R+++ LV                       + TS+T         R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           +KL  G + ++ + IEV +  S  S FD+  G  +  + ++  F   +GS   KK +
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTK 233


>gi|237843861|ref|XP_002371228.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|211968892|gb|EEB04088.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|221483823|gb|EEE22135.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii GT1]
          Length = 565

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%)

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
           +K +++V++    +    ++ + D +TV   +    EN GIVF+DEFDK+V   SG+   
Sbjct: 331 QKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAENRGIVFIDEFDKLVEERSGSDSS 390

Query: 266 VSRE---GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
             R    GVQR+LL L+EG+SV T+ G INTDH+LFIASG+F   +P+D++PE+QGR P+
Sbjct: 391 AFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIASGSFLACKPSDIIPELQGRLPI 450

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           R  LK L + +F  ILT+TE NL+ Q   L+ TEG+ L F E  +  +A  + +LN+   
Sbjct: 451 RCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKLIFEESGVREIARTSHHLNTMNA 510

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++GARRL+TV+ +VLE   F A   Q   V +  E V   +     + D+  +IL
Sbjct: 511 NVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVEERLRPLMEQADLCKYIL 565



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63
           F   P EIV+ LD+YI+GQ  AK+++AIALR+RWRRQQ+  + LR E+ P N+LL+GP+G
Sbjct: 69  FTKDPDEIVAALDKYIVGQDTAKKSLAIALRDRWRRQQVKDEKLRREIAPNNLLLIGPSG 128

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++RLA  AGAPF+KV  T+FTE+G+VG +   I+  L   A    +E  +  + 
Sbjct: 129 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYTDEKERVKKLIH 188

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
            +A+  A + +  AL  + A +++ +V    ++DG + D E++I+
Sbjct: 189 GEAAGRARQEVARALRAQGAVNDSEDVIAAMIKDGRLDDVEVEID 233


>gi|221504177|gb|EEE29852.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii VEG]
          Length = 357

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%)

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--- 262
           +K +++V++    +    ++ + D +TV   +    EN GIVF+DEFDK+V   SG+   
Sbjct: 123 QKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAENRGIVFIDEFDKLVEERSGSDSS 182

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
                R GVQR+LL L+EG+SV T+ G INTDH+LFIASG+F   +P+D++PE+QGR P+
Sbjct: 183 AFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIASGSFLACKPSDIIPELQGRLPI 242

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           R  LK L + +F  ILT+TE NL+ Q   L+ TEG+ L F E  +  +A  + +LN+   
Sbjct: 243 RCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKLIFEESGVREIARTSHHLNTMNA 302

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++GARRL+TV+ +VLE   F A   Q   V +  E V   +     + D+  +IL
Sbjct: 303 NVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVEERLRPLMEQADLCKYIL 357


>gi|325115186|emb|CBZ50742.1| putative ATP-dependent protease ATP-binding subunit [Neospora
           caninum Liverpool]
          Length = 670

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 132/212 (62%), Gaps = 3/212 (1%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE---GVQRDLLPLVEGSSVS 285
           D + V   +    EN GIVF+DEFDK+V   SG+     R    GVQR+LL L+EG+SV 
Sbjct: 459 DTEAVQERARDAAENRGIVFIDEFDKLVEERSGSDSSAFRSKRVGVQRELLTLIEGTSVQ 518

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           T+ G +NTDH+LFIASG+F   +P+D++PE+QGR P+R  LK L + +F  ILT+TE NL
Sbjct: 519 TQIGVVNTDHVLFIASGSFLAGKPSDIIPELQGRLPIRCDLKPLTEENFVQILTETEYNL 578

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + Q   L+ TEG+ L F E  I  +A ++ +LN+   ++GARRL+TV+ +VLE   F A 
Sbjct: 579 LDQQTALLATEGVKLTFEESGIREIARISHHLNTMNANVGARRLKTVLAKVLEQTKFEAH 638

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             Q   V +  E VR  +     + D+  +IL
Sbjct: 639 KRQGSEVFVTKEMVRERLQPLMEQADLCKYIL 670



 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63
           F   P EIV+ LD+YI+GQ  AK+++AIALR+RWRRQQ+  + LR E+ P N+LL+GP+G
Sbjct: 160 FTKDPDEIVAALDKYIVGQDAAKKSLAIALRDRWRRQQVKDEKLRQEIAPNNLLLIGPSG 219

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++RLA  AGAPF+KV  T+FTE+G+VG +   I+  L   A    +E  +  ++
Sbjct: 220 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYADEKERMKKVIQ 279

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
            +A+  A + +  AL  + A ++++EV    +++G + D +++I+
Sbjct: 280 GEAANRARQEVARALREQGAMNDSKEVIEAMIKEGRLDDVQVEID 324


>gi|291533222|emb|CBL06335.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas
           hypermegale ART12/1]
          Length = 275

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 144/234 (61%), Gaps = 30/234 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKL     PR++V ELD+YI+GQ  AKR+VAIALRNRWR + LP D+RDE++PKNIL++G
Sbjct: 1   MKLNEQI-PRQVVEELDKYIVGQSQAKRSVAIALRNRWRSRHLPEDMRDEIIPKNILMIG 59

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ ++++ + +
Sbjct: 60  STGVGKTEIARRLAKLVKAPFVKVEATKFTEVGYVGRDVESMVRDLAESAVRMLKQEKLE 119

Query: 121 EVREQASINAEERILDALVGK---TATSNT--------------------------REVF 151
           +V+++A   A+ERILD  V +   +A SN                           RE  
Sbjct: 120 QVQDKAKEMAQERILDIYVPEPKSSAVSNPLSAIFGGANKEEESTEKVEEPKYSAGREWC 179

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           RK+L  GE+ +  I+I+V   ++ +       G      N+ ++   +M   RK
Sbjct: 180 RKRLLKGELENDIIEIDVEPKAAPVIGMFAGSGMEDMSNNIQDMIGNLMPKKRK 233


>gi|256750733|ref|ZP_05491618.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256750316|gb|EEU63335.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 173

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 114/136 (83%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGK 141
           A   AE+R++D +VGK
Sbjct: 123 AKKIAEDRLIDYIVGK 138


>gi|270620050|ref|ZP_06221854.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270317774|gb|EFA29150.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 188

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 114/149 (76%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+ DE+ +LI+ + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPL
Sbjct: 39  LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 98

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  IL
Sbjct: 99  VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 158

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSI 367
           T+  ++L  QYK LM TEG+ ++FT +++
Sbjct: 159 TEPHASLTEQYKALMATEGVNIEFTTEAV 187


>gi|218288289|ref|ZP_03492588.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241648|gb|EED08821.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 194

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 108/133 (81%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV  LDRYI+GQ+ AKRAVAIALRNR+RR +L  D++ E+ PKNIL++GPTGVGK
Sbjct: 7   LTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRAKLSPDMQAEVTPKNILMIGPTGVGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+    + V+ +A
Sbjct: 67  TEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAERVKSEA 126

Query: 127 SINAEERILDALV 139
              A +RI++ALV
Sbjct: 127 EARANDRIVEALV 139


>gi|310828087|ref|YP_003960444.1| heat shock protein HslVU [Eubacterium limosum KIST612]
 gi|308739821|gb|ADO37481.1| heat shock protein HslVU [Eubacterium limosum KIST612]
          Length = 473

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 106/134 (79%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV EL+RYIIGQ+ AK+AVA+ALRNR+RR  L  ++RDE  PKNI+++GPTGVG
Sbjct: 5   DLTPKKIVEELNRYIIGQEPAKKAVAVALRNRYRRSLLSEEMRDEFTPKNIIMMGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APFIKVE TKFTE+GYVGR+VE ++RDLV  +I  V++ +  EV EQ
Sbjct: 65  KTEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMVRDLVTTSIRKVQQEKMKEVYEQ 124

Query: 126 ASINAEERILDALV 139
           A   A + ILD LV
Sbjct: 125 AEERANKLILDILV 138


>gi|255029338|ref|ZP_05301289.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes LO28]
          Length = 192

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 129/182 (70%), Gaps = 6/182 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALV-----GKTATSNTRE-VFRKKLRDGEISDKEIDIEVADTSS 174
            VR +A  NAE+R++  L       +T + N  E +F    +  E  ++E+D E+ +  S
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 175 DI 176
            I
Sbjct: 184 QI 185


>gi|255016909|ref|ZP_05289035.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL F2-515]
          Length = 178

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 111/147 (75%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT 147
            VR +A  NAE+R++  L        T
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQT 150


>gi|261884679|ref|ZP_06008718.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 249

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 157/254 (61%), Gaps = 15/254 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAKR +A+ALRNR+RR +L   ++++++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V++ +R++  +
Sbjct: 61  GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120

Query: 125 QASINAEERILDALVGKTATSNTREVFR----------KKLRDGEISDKEIDIEVADTSS 174
           + +   E++IL+ L+       + +  R           KL+ GE+    I++++     
Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDI----- 175

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D S F+  G     +  + E F KV+G   KK  +    K   E ++ +  + +DM+++ 
Sbjct: 176 DQSTFEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKMKLAKNLDMESIK 235

Query: 235 RDSIQMVENYGIVF 248
            ++++  EN GI  
Sbjct: 236 TEALKRAENEGIYL 249


>gi|300214644|gb|ADJ79060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           salivarius CECT 5713]
          Length = 258

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 113/151 (74%), Gaps = 1/151 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR QA+
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126

Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD 157
             A +R++  +V  K    N  +     LRD
Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRD 157


>gi|309807629|ref|ZP_07701573.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169126|gb|EFO71200.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 01V1-a]
          Length = 275

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 104/132 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALV 139
            +A +R++  LV
Sbjct: 124 EHANDRLIKLLV 135


>gi|309804187|ref|ZP_07698265.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805931|ref|ZP_07699961.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 03V1-b]
 gi|308163770|gb|EFO66039.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 11V1-d]
 gi|308167670|gb|EFO69819.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 03V1-b]
          Length = 160

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 104/132 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALV 139
            +A +R++  LV
Sbjct: 124 EHANDRLIKLLV 135


>gi|167835013|ref|ZP_02461896.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
          Length = 156

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 116/156 (74%)

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++++TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T
Sbjct: 1   TTINTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVAT 60

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L+ QY+ L+ TE + L+F ++ I  LA++A  +N    +IGARRL TV+E++LE++S
Sbjct: 61  DASLVKQYQALLATEDVKLEFADEGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVS 120

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+A +   ++V IDA YV   +G+   + D+  ++L
Sbjct: 121 FAAGNHAGESVTIDAAYVDRALGEVSKDEDLSRYVL 156


>gi|257457892|ref|ZP_05623051.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii
           ATCC 35580]
 gi|257444605|gb|EEV19689.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii
           ATCC 35580]
          Length = 155

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 100/123 (81%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P  IV+ELD+YIIGQ  AK+AVA+ALRNR RR +L  D+R+E+ PKNIL++GPTGVGK
Sbjct: 8   LTPPHIVAELDKYIIGQTQAKKAVAVALRNRTRRLKLSEDIREEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V  ++V+   ++ ++ QA
Sbjct: 68  TEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYSMVKSEMQETLKAQA 127

Query: 127 SIN 129
             N
Sbjct: 128 EKN 130


>gi|229552212|ref|ZP_04440937.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU
           [Lactobacillus rhamnosus LMS2-1]
 gi|229314398|gb|EEN80371.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU
           [Lactobacillus rhamnosus LMS2-1]
          Length = 167

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 104/132 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALV 139
             A +R++  LV
Sbjct: 126 KEANKRLVKILV 137


>gi|254751198|ref|ZP_05203237.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 99

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 88/98 (89%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVE 98


>gi|115377937|ref|ZP_01465121.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365042|gb|EAU64093.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
          Length = 142

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 102/142 (71%)

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+  D   IL +  ++LI QY  L+ T
Sbjct: 1   MLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILREPRNSLIRQYTALLAT 60

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L+FT+D+++ +A +A   N    +IGARRL TV+ER+L+++SF AS++ +K + +D
Sbjct: 61  EGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEVSFGASEMGQKALKVD 120

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YVR  +     + D+  +IL
Sbjct: 121 AAYVRERLASIVQDEDLSRYIL 142


>gi|213586931|ref|ZP_03368757.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 131

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 95/131 (72%)

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  
Sbjct: 1   AKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSG 60

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + IDAEYV  H+   
Sbjct: 61  IKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDAL 120

Query: 427 PSETDMYHFIL 437
            ++ D+  FIL
Sbjct: 121 VADEDLSRFIL 131


>gi|270720322|ref|ZP_06223384.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270315319|gb|EFA27622.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 179

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 28  MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 87

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI 92
           T I+RRLA+LA APFIKVE TK  +I
Sbjct: 88  TEIARRLAKLANAPFIKVEATKLRKI 113


>gi|223934536|ref|ZP_03626457.1| ATPase AAA-2 domain protein [bacterium Ellin514]
 gi|223896999|gb|EEF63439.1| ATPase AAA-2 domain protein [bacterium Ellin514]
          Length = 530

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 191/437 (43%), Gaps = 94/437 (21%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVG 60
             F + PR+I + LDR++I Q +AK+ +++AL + + + +L  + ++      +NI+L+G
Sbjct: 56  FKFEYKPRDIKAYLDRFVIQQDEAKKVLSVALCDHYHQVRLAFEGKETPNYAKQNIILIG 115

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT + R +A L G PF+K + TKF+E GYVG +VE ++R+L        R +  D
Sbjct: 116 PTGVGKTYLIRSVADLIGVPFVKGDATKFSETGYVGGDVEDLVREL-------YRRADGD 168

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             R Q  I                               I   EID   A +SS  +  D
Sbjct: 169 ADRAQYGI-------------------------------IYIDEIDKIAAASSS--TGRD 195

Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           + G G    +L L E                 VQ   P+ +  +   ++DM    + S  
Sbjct: 196 VSGRGVQTNLLKLME--------------ETEVQTRSPQDIAGQIQAMMDMSQRGKKSAS 241

Query: 240 MVENYGIVFL-----DEFDKIVARDSGNG-IG-VSREGVQRDLLPLVEGSSVSTKYGSIN 292
            +    I+F+     D  DK+V R      IG  ++E  +   + ++E +          
Sbjct: 242 SINTRHILFIVSGAFDGLDKLVRRRLREATIGFAAKETKEETEIQVLEQAQTK------- 294

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
            D I F               PE  GR PVRV  +SL   D   IL  +E ++I QY++ 
Sbjct: 295 -DFIDF------------GFEPEFIGRLPVRVICQSLGVDDLFAILKSSEGSIIRQYEQS 341

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
               GI + F ED +  +A++A    +     GAR L TV ERV  +I F     Q K  
Sbjct: 342 FAAYGIEVFFREDGLRRIAELAAGEGT-----GARGLMTVCERVFRNIKFQLPSTQVKRF 396

Query: 413 VIDAEYVRLHIGDFPSE 429
           ++  E V     D P+E
Sbjct: 397 LVTRELV-----DNPAE 408


>gi|58699989|ref|ZP_00374555.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533493|gb|EAL57926.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 109

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L+ +ES+RL+D D + +++I +V N GIVFLDE DKI AR    G  V+RE
Sbjct: 4   VTVKEAREILINEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNRE 62

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
           GVQRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+
Sbjct: 63  GVQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPEL 109


>gi|45389|emb|CAA47149.1| unnamed protein product [Pseudomonas aeruginosa PAO1]
          Length = 126

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 90/126 (71%), Gaps = 4/126 (3%)

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL+KTEG+ ++F ED I  LA++A 
Sbjct: 1   LQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIKRLAEIAW 60

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVVIDAEYVRLHIGDFPSETD 431
            +N    +IGARRL T++ER+LE++SFSA+DL     +K ++IDA YV  H+G+   + D
Sbjct: 61  QVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSHLGELAEDED 120

Query: 432 MYHFIL 437
           +  +IL
Sbjct: 121 LSRYIL 126


>gi|323144788|ref|ZP_08079362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Succinatimonas hippei YIT 12066]
 gi|322415434|gb|EFY06194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Succinatimonas hippei YIT 12066]
          Length = 428

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 198/423 (46%), Gaps = 94/423 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+   LD Y+IGQ +AK+ +++A+ N ++R +   D  D EL   NILL+GPTG GK
Sbjct: 71  TPHELTRHLDDYVIGQDEAKKVLSVAVYNHYKRLKHSMDNSDVELGKSNILLIGPTGSGK 130

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LA+    PF   + T  TE GYVG +VE +I  L+                +  
Sbjct: 131 TLLVQTLAKFLNVPFAMSDATTLTEAGYVGEDVENVIVRLL----------------QSC 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-G 184
             N E                      K + G +   EID ++A  S + S   D+ G G
Sbjct: 175 DYNVE----------------------KAKRGIVYIDEID-KIARKSENPSITRDVSGEG 211

Query: 185 ASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
               +L L E  + S     GRK          +P+       ++I++DT      Q++ 
Sbjct: 212 VQQALLKLVEGTVASIPPQGGRK----------HPQ------QQMIEVDTS-----QILF 250

Query: 243 NYGIVFLDEFDKI----VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             G  F D  DKI    V+++SG G G    G + D L L E      KY  +  D ++ 
Sbjct: 251 ICGGAF-DGLDKIVEKRVSKNSGIGFGAEVLG-ENDKLSLTE------KYRKVEPDDLVK 302

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR PV   L  L++     +L + ++ ++ Q++ +++ EG+
Sbjct: 303 FG-----------IIPEFVGRMPVITALSELDRDSLVRVLREPKNAVVRQFETMLRYEGV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+FTE+++ A+AD+A+  ++     GAR L++V+E +L +  +    + +   +++D +
Sbjct: 352 DLEFTEEALKAIADIAIKRHT-----GARGLRSVVEGLLLNTMYDIPSVNDVAKIIVDEQ 406

Query: 418 YVR 420
            V+
Sbjct: 407 TVK 409


>gi|229496591|ref|ZP_04390305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316488|gb|EEN82407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
          Length = 420

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 105/428 (24%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P++I + LD+Y++GQ  AK+ +++A+ N ++R  Q+P D   E+   NI++VGPTG GKT
Sbjct: 76  PKDIKAFLDQYVVGQDAAKKYLSVAVYNHYKRVLQVPNDEDIEVEKSNIIMVGPTGTGKT 135

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ +AR+   PF   + T  TE GYVG ++E I+  L+                   S
Sbjct: 136 LLAQTIARMLDVPFAIADATVLTEAGYVGEDIESILTRLLQ------------------S 177

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-GA 185
            N +ER  +                     G +   EID ++A  S + S   D+ G G 
Sbjct: 178 CNYDERAAER--------------------GIVFIDEID-KIARKSDNPSITRDVSGEGV 216

Query: 186 SVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             G+L L E  + +     GRK          +P+       + I ++T H         
Sbjct: 217 QQGLLKLLEGSIINVPPAGGRK----------HPD------QKFIHVNTRH--------- 251

Query: 244 YGIVFL--DEFD----KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
             I+F+    FD    KI  R +   IG   EG         E S V  ++   +  H  
Sbjct: 252 --ILFICAGAFDGIERKIANRLNTRYIGYQEEG---------ERSHVDPQHLLKHVSHQD 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
             A G         L+PEI GR P+  +L  L +S  + ILT+ ++ +I QY +L   +G
Sbjct: 301 LRAYG---------LIPEILGRLPILTYLDPLERSTLKSILTEPKNAIIGQYVKLFAMDG 351

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS---ASDLQEKTVVI 414
           I L FT++++D + D  +       ++GAR L++V+E ++ +  ++    +D+ E  +++
Sbjct: 352 IKLHFTDEALDYIVDKTIK-----EELGARGLRSVVETIMMEAMYTLPGNTDVSE--LLV 404

Query: 415 DAEYVRLH 422
             EY + H
Sbjct: 405 TREYAQEH 412


>gi|302852753|ref|XP_002957895.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f.
           nagariensis]
 gi|300256772|gb|EFJ41031.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f.
           nagariensis]
          Length = 1789

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%)

Query: 220 MRDESDRLIDMDTVH-RDSIQMVENYGIVFLDE-FDKIVARDSG---NGIGVSREGVQRD 274
           M  E+ R++  D      +I  +    I F  E  DKIV   S     G GVS EGVQRD
Sbjct: 189 MDPEAQRIVSPDVATWMSAIASLVGESIWFEAEGIDKIVDPSSVRVVTGGGVSSEGVQRD 248

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP-EIQGRFPVRVHLKSLNKSD 333
           LLP++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L  E+QGR P+RV LK L   D
Sbjct: 249 LLPIIEGSVVPTKHGNMSTEHVLFICSGAFHTAKPSDMLAEELQGRLPIRVELKGLTAED 308

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           F  ILT+ ++N++ Q + L ++   I        DAL
Sbjct: 309 FYRILTEPQNNMLRQQQTLPRSRTCIASILVVQADAL 345


>gi|213859666|ref|ZP_03385370.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 79

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 65/77 (84%)

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
           +G  VSREGVQRDLLPLVEG +VSTK+G + TDHILFI+SGAF +++P+DL+PE+QGR P
Sbjct: 3   SGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFISSGAFQIAKPSDLIPELQGRLP 62

Query: 322 VRVHLKSLNKSDFRLIL 338
           +RV L++L  SDF  IL
Sbjct: 63  IRVELQALTTSDFERIL 79


>gi|289805558|ref|ZP_06536187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 75/103 (72%)

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  I  +A+ A  +N T
Sbjct: 1   PIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNET 60

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             +IGARRL TV+ER++E+IS++ASDL  + + IDAEYV  H+
Sbjct: 61  TENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHL 103


>gi|256820836|ref|YP_003142115.1| ATP-dependent protease ATP-binding subunit ClpX [Capnocytophaga
           ochracea DSM 7271]
 gi|315224015|ref|ZP_07865856.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga
           ochracea F0287]
 gi|256582419|gb|ACU93554.1| Sigma 54 interacting domain protein [Capnocytophaga ochracea DSM
           7271]
 gi|314945986|gb|EFS97994.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga
           ochracea F0287]
          Length = 410

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 55/224 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 237

Query: 292 NTDHILFIASGAF------------------------HVSR--------PADL-----LP 314
           NT+HILFIA GAF                         V R        P DL     +P
Sbjct: 238 NTEHILFIAGGAFDGIERVISKRLNMQAVGYNSSKNTQVDRKNLVQYIIPKDLKDFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV  ++  L+K   R+ILT+ ++ +I QYK+L + +GI  D TE+++D + + A
Sbjct: 298 EIIGRLPVLTYMNPLDKHTLRMILTEPKNAIIKQYKKLFEMDGIKFDITEEALDFIVEKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           +        +GAR L+++ E +L D  F   +   K + I  EY
Sbjct: 358 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKELTITKEY 396



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P AD   E+   N+++VG TG GK
Sbjct: 65  TPQEIKKFLDQYVIGQDFTKKILSVAVYNHYKRLQQPDADDEVEIQKSNVIMVGETGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAADYDVEKAER 177


>gi|294053547|ref|YP_003547205.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293612880|gb|ADE53035.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 533

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 4/111 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQLP--ADLRDELMPKNILLV 59
           +FN  P+EI   L+RY+I Q +AK+ +++A+ + +   RQQ+   AD   E   +NILL+
Sbjct: 66  SFNLKPKEIRDYLNRYVIRQDEAKKVISVAICDHYNHVRQQISGKADSSTEYSKQNILLL 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTGVGKT + + +ARL G PF+K + TKF+E GYVG +V+ ++RDLV  A
Sbjct: 126 GPTGVGKTYLIKNIARLIGVPFVKADATKFSETGYVGNDVDDLVRDLVKAA 176



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 71/257 (27%)

Query: 229 DMDTVHRDSIQM------VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+D + RD ++       +  YGI+FLDE DKI +  S  G  VS  GVQ +LL L+E +
Sbjct: 164 DVDDLVRDLVKAAGGDVELAQYGIIFLDEIDKIASEGSPGGRDVSGRGVQINLLKLMEET 223

Query: 283 SVS----------------------TKYGSINTDHILFIASGAF---------HVSR--- 308
            V+                       +  +I+T +ILFI SGAF          +S+   
Sbjct: 224 EVNLFSPTDMMSQMQAVMEMQRGGKPRPKTISTRNILFIVSGAFDKLGESIQKRMSQNEM 283

Query: 309 ------------PADLL--------------PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                       P+  L              PE  GR P+RV  +SLN  D   ILT +E
Sbjct: 284 GFGANVRDDDEDPSKYLQHAETRDFIKYGFEPEFIGRVPIRVACESLNTDDLASILTSSE 343

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +++ QY++     GI  + ++++I  LA  A    +     GAR L TV+ER+  +  F
Sbjct: 344 GSILNQYRDDFHGYGIDFNISKEAIRTLAAHASKERT-----GARGLMTVLERLFRNFKF 398

Query: 403 SASDLQEKTVVIDAEYV 419
                  K+  +D E +
Sbjct: 399 ELPSTAIKSFDVDVETI 415


>gi|213962533|ref|ZP_03390795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sputigena Capno]
 gi|213954859|gb|EEB66179.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sputigena Capno]
          Length = 410

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 55/224 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 237

Query: 292 NTDHILFIASGAF------------------------HVSR--------PADL-----LP 314
           NT+HILFIA GAF                         V R        P DL     +P
Sbjct: 238 NTEHILFIAGGAFDGIERVISKRLNMQSVGYNSSKNTQVDRKNLVQYIIPKDLKDFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV  ++  L+K   R+ILT+ ++ +I QYK+L + +GI  D TE+++D + + A
Sbjct: 298 EIIGRLPVLTYMNPLDKHTLRMILTEPKNAIIKQYKKLFEMDGINFDITEEALDFIVEKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           +        +GAR L+++ E +L D  F   +   K + +  EY
Sbjct: 358 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKELKVTKEY 396



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P AD   E+   N+++VG TG GK
Sbjct: 65  TPQEIKQFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNADDEVEIQKSNVIMVGETGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILTRLLQAADYDVEKAER 177


>gi|254445308|ref|ZP_05058784.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
 gi|198259616|gb|EDY83924.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
          Length = 531

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 4/110 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRD-ELMPKNILLVG 60
           FN  PREI   LDRY+I Q +AK+ +++A+    N  RR     DL D E   +NI+L+G
Sbjct: 62  FNLKPREIRDYLDRYVIQQNEAKKVISVAICDHFNHVRRCLERPDLGDLEYAKQNIILLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTGVGKT + R +A+L G PF+K + TKF+E GY+G +VE ++RDLV  A
Sbjct: 122 PTGVGKTYLMRNVAKLVGVPFVKADATKFSETGYIGGDVEDLVRDLVKGA 171



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 65/231 (28%)

Query: 244 YGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVS----------------- 285
           YGI+++DE DKI  + +G+G   VS  GVQ +LL L+E + V+                 
Sbjct: 180 YGIIYIDEIDKIANKMNGSGGRDVSGRGVQINLLKLMEDTEVNLQSQTDMMGQMQAMMEM 239

Query: 286 ----TKYGSINTDHILFIASGAFH------------------VSRPAD------------ 311
                K  +I+T HILFI SGAF                    S+ +D            
Sbjct: 240 QRGKKKKRTISTKHILFIVSGAFDQMDKAIEKRLTNTSMGFGASQHSDSDEDENFLDQAE 299

Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                     PE  GR PVRV  + L  +D   I+T +E +++ QY    +  GI L+  
Sbjct: 300 TRDFIDYGFEPEFVGRLPVRVACQPLKPNDLFEIMTTSEGSVLRQYISDFEGYGITLEMD 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +DS++ +A+ A    +     GAR L T++ER      F       KT+ +
Sbjct: 360 KDSLEEVAERAYKEKT-----GARGLMTILERAFRSFKFELPSTSIKTLQV 405


>gi|34540240|ref|NP_904719.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188995414|ref|YP_001929666.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
 gi|46576403|sp|Q7MX10|CLPX_PORGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689262|sp|B2RL24|CLPX_PORG3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|34396552|gb|AAQ65618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188595094|dbj|BAG34069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
          Length = 411

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIPV 237

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T HILF+ +GAF                         H+ R        P DL     +
Sbjct: 238 DTRHILFVCAGAFDGIEKKIAQRLNTRVVGYTAGLQNRHIDRENMLRYIRPQDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  HL+ L++   R I+T+ ++ +  QY++L   +GI + FT D +D + D 
Sbjct: 298 PEIIGRLPILTHLEPLDRDALRNIMTEPKNAITKQYEKLFAMDGIKVSFTSDMLDFVVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L++++E ++ D  F+    ++KT+V+D  Y   H+
Sbjct: 358 AIEFK-----LGARGLRSIVETIMMDAMFTMPSGKKKTLVVDKAYAEAHL 402



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQ DAKR +++A+ N ++R  QQ  +D   E+   NI++VGPTG GK
Sbjct: 66  PIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSD-GVEIEKSNIIMVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  A   V+++ R
Sbjct: 125 TLLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADYDVKQAER 177


>gi|332882822|ref|ZP_08450433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679324|gb|EGJ52310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 412

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 55/224 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 239

Query: 292 NTDHILFIASGAF------------------------HVSR--------PAD-----LLP 314
           NT+HILFIA GAF                        H+ R        P D     L+P
Sbjct: 240 NTEHILFIAGGAFDGIERVISKRLNMQAVGYNSSKNTHIDRKNLVQYIIPKDLKDFGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV  ++  L++   R+ILT+ ++ +I QY++L + +GI  + TE+++D + + A
Sbjct: 300 EIIGRLPVLTYMNPLDRHTLRMILTEPKNAIIKQYQKLFEMDGIRFEITEEALDFIVEKA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           +        +GAR L+++ E +L D  F   +   K + +  EY
Sbjct: 360 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKNLTVTKEY 398



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P  D   E+   N+++VG TG GK
Sbjct: 67  TPQEIKRFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNVDDEVEIQKSNVIMVGETGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 127 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAA 170


>gi|326334770|ref|ZP_08200976.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325693083|gb|EGD35016.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 415

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 108/224 (48%), Gaps = 55/224 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ  LL L+EGS V+            KY  +
Sbjct: 180 GIVFIDEIDKISRKSDNPSITRDVSGEGVQHALLKLLEGSIVNVPPKGGRKHPDQKYIEV 239

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT+HILFIA GAF          ++R A                             L+P
Sbjct: 240 NTEHILFIAGGAFDGIERIIARRMNRQAVGYNSSKETKVDDKNLLQYITHKDLKDYGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV  ++  L+K   R+ILT  ++ L+ QY +L   +GI L F ED+++ + + A
Sbjct: 300 EIIGRLPVLTYMDPLDKETLRMILTQPKNALVKQYIKLFAMDGITLSFEEDALNFIVEKA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           +        +GAR L+++ E +L D  F+     EKT+V+   Y
Sbjct: 360 LEYK-----LGARGLRSLCESILTDAMFNLPSTNEKTLVVTRSY 398



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ+  K+ +++A+ N ++R     D  + E+   NI++VG TG GKT
Sbjct: 68  PTEIKAFLDQYVIGQEATKKVLSVAVYNHYKRLLQEKDQEEVEIQKSNIVMVGQTGTGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A++   P   V+ T FTE GYVG +VE I+  L+  A   V ++ R
Sbjct: 128 LMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILSRLLQAADYNVEKAER 179


>gi|311746205|ref|ZP_07719990.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus
           sp. PR1]
 gi|126576433|gb|EAZ80711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus
           sp. PR1]
          Length = 408

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ +L L+EG+ V+            K  ++
Sbjct: 172 GIVYIDELDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTVVNVPPQGGRKHPDQKMIAV 231

Query: 292 NTDHILFIASGAF-----HV-----SRP-----------AD-----------------LL 313
           NTD+ILFI  GAF     H+     ++P           AD                 L+
Sbjct: 232 NTDNILFICGGAFDGIARHIGKRLNTQPMGFGKAKDNAVADRENLLQYVTSQDLKAFGLI 291

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR P+  HL  L++   + ILT+ ++ L+ QY +L+K EG+ + F ED+ID + D 
Sbjct: 292 PELIGRLPILTHLDPLHRDSLKRILTEPKNALVKQYDKLLKMEGVDIVFEEDAIDFIVDK 351

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           AV  N     +GAR L+++ E ++ D  +   SD   K +VIDA+Y +
Sbjct: 352 AVEFN-----LGARGLRSICEAIITDAMYEIPSDDSIKELVIDAKYAQ 394



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67
           P+E+ S LD+++IGQ++AK+ + +A+ N ++R     D  D  + K NI++VG TG GKT
Sbjct: 60  PKELTSFLDQFVIGQEEAKKVLTVAVYNHYKRLSQKTDKDDVKIEKSNIIMVGDTGTGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 120 YLAKTLAKILEVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAER 171


>gi|86130753|ref|ZP_01049352.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
 gi|85818164|gb|EAQ39324.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
          Length = 410

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 107/225 (47%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313
           NT+HILFIA GAF     H+S+                            P DL     +
Sbjct: 234 NTEHILFIAGGAFDGIERHISKRLNMQAMGFVASKSDEALEKDNMLKYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+    R ILT+ ++ +I QYK+L   + I    T+D++D L D 
Sbjct: 294 PEIIGRLPVLTHMNPLDAGTLRAILTEPKNAIIKQYKKLFAMDDIEFSITDDALDYLVDK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  F      EK++ +   Y
Sbjct: 354 AIEYK-----LGARGLRSLCEAILTDAMFDLPSSDEKSLNVTKTY 393



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI S LD Y+IGQ+  KR +++A+ N ++R   PA   D E+   NI++VG TG GKT
Sbjct: 62  PQEIKSFLDEYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 122 LIAKTVARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173


>gi|225158969|ref|ZP_03725281.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium
           TAV2]
 gi|224802464|gb|EEG20724.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium
           TAV2]
          Length = 537

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 4/110 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQL--PADLRDELMPKNILLVG 60
           F+  PREI   LDR++I Q +AK+ +++A+ + +   RQ L  PA    +   +NIL++G
Sbjct: 58  FSLKPREIRDHLDRFVIQQAEAKKVLSVAICDHYNHVRQCLETPALRERDYAKQNILVLG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTGVGKT + R +ARL G PF+K + TKF+E GYVG +V+ I+RDLV  A
Sbjct: 118 PTGVGKTYLMRNIARLIGVPFVKADATKFSETGYVGGDVDDIVRDLVKAA 167



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 105/272 (38%), Gaps = 86/272 (31%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIG-----VSREGVQRDLLP 277
           D+D + RD ++  +       YGIV++DE DKI +       G     VS  GVQ +LL 
Sbjct: 155 DVDDIVRDLVKAADGDVELAQYGIVYIDEIDKIASAGGPGAPGGGGRDVSGRGVQINLLK 214

Query: 278 LVEGSSVS----------------------TKYGSINTDHILFIASGAF----------- 304
           L+E + V+                       +  +INT HILFI SGAF           
Sbjct: 215 LMEDTDVNLQSQTDIAAQMQAMMELQRGGKPRKRTINTRHILFIVSGAFDKLGESIRRRI 274

Query: 305 ----------------HVSRPAD---------------------LLPEIQGRFPVRVHLK 327
                             + PA                      + PE  GR PVRV  +
Sbjct: 275 QSNRIGFAAAAPTTTSTDASPASATESASDYLRYAESRDFIDYGMEPEFVGRLPVRVACQ 334

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           +L   D   IL  +E +++ QY+       I  + T  ++  +A +A   N+     GAR
Sbjct: 335 NLTADDLEKILNTSEGSILQQYRADFGGYSIDFEITPAAVAEVARLAHRENT-----GAR 389

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            L TV+ERVL D  F       KT  ID   V
Sbjct: 390 GLMTVLERVLRDFKFELPSTAIKTFRIDPATV 421


>gi|75763961|ref|ZP_00743588.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488554|gb|EAO52143.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 118

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 68/83 (81%)

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +++GPTGVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E
Sbjct: 1   MMIGPTGVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKE 60

Query: 117 SRRDEVREQASINAEERILDALV 139
               +V+++A   A +R+++ LV
Sbjct: 61  EMVVKVQDKAEEQANQRLVEILV 83


>gi|213583953|ref|ZP_03365779.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 136

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 2/136 (1%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           RKKLR+G++ DKEI+I +A     +     PG   +    L  +F   +G  ++K  ++ 
Sbjct: 1   RKKLREGQLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLK 58

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           ++     L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGV
Sbjct: 59  IKDAMKLLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGV 118

Query: 272 QRDLLPLVEGSSVSTK 287
           QRDLLPLVEG +VSTK
Sbjct: 119 QRDLLPLVEGCTVSTK 134


>gi|318043032|ref|ZP_07974988.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0101]
          Length = 450

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 180/427 (42%), Gaps = 97/427 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           PREI + LD  ++GQ++AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 83  PREIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATRLHKSNILLIGP 142

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V +++R  
Sbjct: 143 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQR-- 200

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFD 180
                                               G I   EID ++A  S + S   D
Sbjct: 201 ------------------------------------GIIYIDEID-KIARKSENPSITRD 223

Query: 181 IPG-GASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           + G G    +L L E   + V   G +K      Q C            I +DT      
Sbjct: 224 VSGEGVQQALLKLLEGTVANVPPQGGRKH---PYQDC------------IQIDTS----- 263

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           Q++   G  F+   D +  R   N IG   EG          G S S +       H+L 
Sbjct: 264 QILFICGGAFVGLEDVVQRRMGRNSIGFIPEG----------GRSRSRQNKDQQAAHVL- 312

Query: 299 IASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                 H+  P DL+     PE  GR PV   L+ L+      ILT+    L+ Q++ L+
Sbjct: 313 -----RHLE-PDDLVKYGLIPEFIGRLPVSAVLEPLDSRALEAILTEPRDALVKQFQTLL 366

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTV 412
             + + LDF   +++A+A  A    +     GAR L+ ++E ++ D+ +   SD   K  
Sbjct: 367 SMDEVRLDFEPGAVEAIAAEAHRRKT-----GARALRGIVEELMLDLMYDLPSDKSTKAF 421

Query: 413 VIDAEYV 419
            +  E V
Sbjct: 422 TVTRELV 428


>gi|258648498|ref|ZP_05735967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
 gi|260851263|gb|EEX71132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
          Length = 415

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L L+EGS V+             Y  +
Sbjct: 183 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGSVVNVPPKGGRKHPDQDYVHV 242

Query: 292 NTDHILFIASGAF-------------------HVSR-----PADLL-------------- 313
           +T +ILFI  GAF                   +V R     PA+L+              
Sbjct: 243 DTRNILFICGGAFDGIEKKIAQRLNTHTVGYDNVQRVKKIDPANLMQYIEPMDLKSFGLI 302

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R IL + +++L+ QY++L K +G+ L F ED++D + + 
Sbjct: 303 PEIIGRLPVLTYLNPLDEAALRRILVEPKNSLVRQYEKLFKMDGVTLTFAEDALDFIVNK 362

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L+++ME ++ D  F     +E T  + A Y + H 
Sbjct: 363 AMEYK-----LGARGLRSIMESIMMDAMFDIPSAKEDTFKVTAAYAKEHF 407



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 5/115 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD---ELMPKNILLVGPTGV 64
           P+EI S LD+Y+IGQ+DAKR +++++ N ++R  Q   D  D   E+   NI++VG TG 
Sbjct: 68  PQEIKSYLDQYVIGQEDAKRYLSVSVYNHYKRLAQENLDAVDDGVEIEKSNIIMVGTTGT 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 128 GKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQEADFNVERAER 182


>gi|120434593|ref|YP_860284.1| ATP-dependent protease ATP-binding subunit ClpX [Gramella forsetii
           KT0803]
 gi|117576743|emb|CAL65212.1| ATP-dependent Clp protease ATP-binding subunit [Gramella forsetii
           KT0803]
          Length = 410

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+SV+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTSVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT++ILFIA GAF      +S+                            P DL     +
Sbjct: 234 NTENILFIAGGAFDGIERIISKRLNMQAVGFSASKSEDSIERTNLLKYIIPKDLKEFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P   H+  L+K   R ILT+ ++ +I QYK+L + + I  D T+D++D + + 
Sbjct: 294 PEIIGRLPALTHMNPLDKETLRAILTEPKNAIIKQYKKLFEMDDIKFDITDDALDYIVNK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           AV        +GAR L+++ E +L D  F   +  E +  +  EY 
Sbjct: 354 AVEYK-----LGARGLRSLCEAILTDAMFELPESNEDSFTVTREYA 394



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+ I S LD YIIGQ+  K+ +++A+ N ++R   P +  D E+   NI++VG TG GKT
Sbjct: 62  PKTIKSFLDEYIIGQEQTKKVMSVAVYNHYKRLLQPENEDDVEIQKSNIVMVGETGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LMARTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAA 164


>gi|115379797|ref|ZP_01466867.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820758|ref|YP_003953116.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363189|gb|EAU62354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393830|gb|ADO71289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 356

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
            +PR+I   LDRY+IGQ +AKR VAIA  N  +R Q     R  L+ K NILL+GPTG G
Sbjct: 12  LTPRQIFERLDRYVIGQDEAKRTVAIAAHNHLKRIQARRLRRGSLIKKSNILLIGPTGSG 71

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT I+R LA +   PF  V+ T++TE GY G++VE +I DL+  A + V +++R
Sbjct: 72  KTHIARNLADILSVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 125



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 52/226 (23%)

Query: 245 GIVFLDEFDKIVARDSG--NGIG---VSREGVQRDLLPLVEGSSV-----------STKY 288
           GI+F+DE DKI  R  G  NG G   +  EGVQ+ LL ++EG  V            + +
Sbjct: 126 GIIFVDEVDKIARRSQGARNGAGSRDIGGEGVQQGLLKMLEGREVFVPMNLTQAWNKSDF 185

Query: 289 GSINTDHILFIASGAFH--------VSRPAD-----------------------LLPEIQ 317
             I+T  ILFI +G F          SRP                         +L E  
Sbjct: 186 VQIDTRDILFICAGTFSDLHEYGEGGSRPLGFGSEEASRRITRRISVKQLVDFGMLAEFL 245

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L++L + +   +LT+   ++I +++EL+  + I LDFTE+++  +   +V  
Sbjct: 246 GRLPVMVQLQALGEPELLRVLTEPPDSIIREFRELLAYDEIDLDFTEEALREVVHYSVEK 305

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
                 +GAR L++++E V+ D+ F A +    +  +D ++VR  +
Sbjct: 306 G-----LGARGLRSILEHVMADVMFEAPERGRGSFRVDGDFVRTRL 346


>gi|319943617|ref|ZP_08017898.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742850|gb|EFV95256.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 421

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 68/100 (68%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQQ AKR +A+A+ N ++R +   D  D EL   NILLVGPTG GKT
Sbjct: 66  PSEIAAILDQYVIGQQKAKRTLAVAVYNHYKRLRHKGDKDDVELTKSNILLVGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 LLAQTLARLLNVPFVMADATTLTEAGYVGEDVESIIQKLL 165



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  +
Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFVQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V   +D                   L
Sbjct: 238 DTTNILFICGGAFDGMDKVIRDRSERSGIGFGAQVKGASDRSLSELFQDIEPDDLIKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L+++    ILT+ ++ L+ QY++L   EG+ LD    ++ A+A 
Sbjct: 298 IPELVGRLPVLATLDELDEATLVRILTEPKNALVKQYQKLFSMEGVELDIRPAALKAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L DI +    L+  + VVID
Sbjct: 358 QALKRKA-----GARGLRSILEHALIDIMYELPGLKNVEKVVID 396


>gi|315607429|ref|ZP_07882425.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae
           ATCC 33574]
 gi|315250861|gb|EFU30854.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae
           ATCC 33574]
          Length = 413

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67
           PREI   LD YIIGQ DAKR +A+A+ N ++R Q PA D   E+   NI++VG TG GKT
Sbjct: 66  PREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R
Sbjct: 126 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 177



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTMVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      HV +           P DL     +
Sbjct: 238 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRKIDKEDIMQYIQPQDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L +   R ILT+ ++++I QY +L + +G+ L F E ++D + D 
Sbjct: 298 PELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGALDYIVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ D  F     + K   I A+Y +
Sbjct: 358 AVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAK 399


>gi|288924567|ref|ZP_06418504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccae D17]
 gi|288338354|gb|EFC76703.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccae D17]
          Length = 414

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67
           PREI   LD YIIGQ DAKR +A+A+ N ++R Q PA D   E+   NI++VG TG GKT
Sbjct: 67  PREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R
Sbjct: 127 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 178



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L L+EG+ V+             Y  +
Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTMVNVPPKGGRKHPDQDYIHV 238

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      HV +           P DL     +
Sbjct: 239 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRKIDKEDIMQYIQPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L +   R ILT+ ++++I QY +L + +G+ L F E ++D + D 
Sbjct: 299 PELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGALDYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ D  F     + K   I A+Y +
Sbjct: 359 AVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAK 400


>gi|224824982|ref|ZP_03698088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella
           nitroferrum 2002]
 gi|224602653|gb|EEG08830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella
           nitroferrum 2002]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI S+LD+YIIGQ  AK+ +++A+ N ++R   P D  D EL   NILL+GPTG GK
Sbjct: 68  TPQEIRSDLDQYIIGQDIAKKTLSVAVYNHYKRLYTPTDKDDVELAKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLLQKCDYDVEKAQR 180



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 59/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFIQV 240

Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313
           +T +ILFI  GAF                     VS                P DL+   
Sbjct: 241 DTTNILFICGGAFDGLEKIIRRRSEKGGIGFGAEVSSKDESKSISVLFKDVEPGDLIKFG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT  ++ L+ QY+ L   EG+ L+    ++  +A
Sbjct: 301 LIPELIGRLPVVATLEELDEEALVTILTQPKNALVKQYQRLFSLEGVELEIRPSALRVIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
             A+     V   GAR L++++ER L D  +    +   + V+  E V +  GD P
Sbjct: 361 KQAL-----VRKTGARGLRSILERALLDTMYELPSMDNVSRVVVDEKV-IEKGDKP 410


>gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC
           23445]
 gi|38257637|sp|Q8G0I5|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189082486|sp|B0CGR0|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           ATCC 23445]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit [Brucella canis ATCC
           23365]
 gi|189082485|sp|A9M5C1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           canis ATCC 23365]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFASLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             V   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
 gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             V   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|254701853|ref|ZP_05163681.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           5 str. 513]
 gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
 gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            AV   +     GAR L+++ME++L D  F    L+
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLE 390


>gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|254706706|ref|ZP_05168534.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M163/99/10]
 gi|254710186|ref|ZP_05171997.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis B2/94]
 gi|254714184|ref|ZP_05175995.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M644/93/1]
 gi|254717619|ref|ZP_05179430.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M13/05/1]
 gi|256031680|ref|ZP_05445294.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M292/94/1]
 gi|256159836|ref|ZP_05457569.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M490/95/1]
 gi|256255082|ref|ZP_05460618.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           B1/94]
 gi|260168814|ref|ZP_05755625.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           F5/99]
 gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
 gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F + ++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDYALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|256113665|ref|ZP_05454476.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIAMLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis biovar Abortus 2308]
 gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|254689335|ref|ZP_05152589.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 6 str. 870]
 gi|254693819|ref|ZP_05155647.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697468|ref|ZP_05159296.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254730365|ref|ZP_05188943.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 4 str. 292]
 gi|256044766|ref|ZP_05447670.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256061192|ref|ZP_05451344.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella neotomae
           5K33]
 gi|256257581|ref|ZP_05463117.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 9 str. C68]
 gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|21263465|sp|Q8YHC7|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|68067919|sp|Q9L7X5|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123727373|sp|Q2YPX2|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763837|sp|C0RJ80|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A
           (P-loop):Bacterial chromosomal replication initiator
           protein, DnaA:AAA ATP [Brucella melitensis biovar
           Abortus 2308]
 gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis M28]
 gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis M5-90]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC
           25840]
 gi|166214760|sp|A5VQN3|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis
           ATCC 25840]
          Length = 427

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
 gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
          Length = 424

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------L 312
           +T +ILFI  GAF                      +  D                    L
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEGLLKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|298346556|ref|YP_003719243.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
 gi|298236617|gb|ADI67749.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
          Length = 420

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                        V    DL              +P
Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A
Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
               +     GAR L T+ME  L  I F   S  D+ E  V+I+AE V
Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398


>gi|228472218|ref|ZP_04056984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276421|gb|EEK15145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 415

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 55/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ  LL L+EGS V+            KY  +
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQHALLKLLEGSIVNVPPKGGRKHPDQKYIEV 239

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT+HILFIA GAF          ++R A                             L+P
Sbjct: 240 NTEHILFIAGGAFDGIEQIIAKRMNRQAVGYNTSKETRVDDKNLLQYVTHKDLKDFGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV  ++  L++S  R+ILT+ ++ +I QY +L   + I L F E++++ + + A
Sbjct: 300 EIIGRLPVLTYMNPLDESTLRMILTEPKNAIIKQYIKLFGMDDIALSFEEEALNFIVEKA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +        +GAR L+++ E +L D  F     +EK++V+   Y +
Sbjct: 360 LEYK-----LGARGLRSLCESILTDAMFQLPGTEEKSLVVTRAYAQ 400



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD+Y+IGQ+  K+ +++A+ N ++R     D  + E+   NI++VG TG GKT
Sbjct: 68  PTEIKSFLDQYVIGQEATKKVLSVAVYNHYKRLLQERDEHEVEIQKSNIVMVGQTGTGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A++   P   V+ T FTE GYVG +VE I+  L+  A
Sbjct: 128 LMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILTRLLQAA 170


>gi|304389726|ref|ZP_07371685.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326902|gb|EFL94141.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 420

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                        V    DL              +P
Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A
Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            N  +     GAR L T+ME  L  I F   S  D+ E  V+I+AE V
Sbjct: 358 ENRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398


>gi|317164409|gb|ADV07950.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 442

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 206 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 265

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 266 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 325

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 326 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 385

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 386 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 425


>gi|194098830|ref|YP_002001893.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934120|gb|ACF29944.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           NCCP11945]
          Length = 442

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 206 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 265

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 266 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 325

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 326 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 385

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 386 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 425


>gi|240080536|ref|ZP_04725079.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA19]
 gi|240123698|ref|ZP_04736654.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID332]
 gi|240128399|ref|ZP_04741060.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268596668|ref|ZP_06130835.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268682330|ref|ZP_06149192.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268686798|ref|ZP_06153660.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268550456|gb|EEZ45475.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268622614|gb|EEZ55014.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268627082|gb|EEZ59482.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 414

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|240013975|ref|ZP_04720888.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI18]
 gi|240016417|ref|ZP_04722957.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA6140]
 gi|240121542|ref|ZP_04734504.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID24-1]
          Length = 414

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|315655112|ref|ZP_07908014.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315490593|gb|EFU80216.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
          Length = 420

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                        V    DL              +P
Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FTE +I A+A++A
Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTESAIHAVAELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
               +     GAR L T+ME  L  I F   S  D+ E  V+I+AE V
Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398


>gi|240118149|ref|ZP_04732211.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID1]
 gi|268603866|ref|ZP_06138033.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
 gi|268587997|gb|EEZ52673.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
          Length = 414

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|240115851|ref|ZP_04729913.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID18]
 gi|254493894|ref|ZP_05107065.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|260440333|ref|ZP_05794149.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI2]
 gi|268601527|ref|ZP_06135694.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291043626|ref|ZP_06569342.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
 gi|226512934|gb|EEH62279.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|268585658|gb|EEZ50334.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291012089|gb|EFE04078.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
          Length = 414

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|315657030|ref|ZP_07909915.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492422|gb|EFU82028.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 420

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                        V    DL              +P
Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A
Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
               +     GAR L T+ME  L  I F   S  D+ E  V+I+AE V
Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSRDDVAE--VIIEAECV 398


>gi|240125888|ref|ZP_04738774.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-92-679]
 gi|268684487|ref|ZP_06151349.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624771|gb|EEZ57171.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 414

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|239999117|ref|ZP_04719041.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae 35/02]
 gi|240113095|ref|ZP_04727585.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae MS11]
 gi|268594953|ref|ZP_06129120.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268599181|ref|ZP_06133348.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
 gi|268548342|gb|EEZ43760.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268583312|gb|EEZ47988.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
          Length = 414

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|59801072|ref|YP_207784.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|293398934|ref|ZP_06643099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
 gi|75356149|sp|Q5F8W5|CLPX_NEIG1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59717967|gb|AAW89372.1| putative ATP-dependent Clp protease ATP-binding subunit [Neisseria
           gonorrhoeae FA 1090]
 gi|291610348|gb|EFF39458.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
          Length = 414

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         +
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313
           ++T +ILFI  GAF                                    +  P DL+  
Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++
Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           A  A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|49475381|ref|YP_033422.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae
           str. Houston-1]
 gi|61211490|sp|Q6G3Z2|CLPX_BARHE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49238187|emb|CAF27397.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           henselae str. Houston-1]
          Length = 424

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+ +    IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L +  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402


>gi|302878842|ref|YP_003847406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
 gi|302581631|gb|ADL55642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
          Length = 416

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 72/111 (64%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I + LD Y+IGQ+ AKR +++A+ N ++R +   D   EL   NILLVGPTG GKT 
Sbjct: 66  PKDICATLDEYVIGQERAKRILSVAVYNHYKRLKCNTDDGVELAKSNILLVGPTGSGKTL 125

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 LAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYNVEKAQR 176



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S           T++  +
Sbjct: 177 GIIYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTKASIPPQGGRKHPNTEFLQV 236

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312
           +T +ILFI  GAF     V R                              P DL     
Sbjct: 237 DTTNILFICGGAFDGLEKVIRNRSSKASIGFGATIRSVDERKTGETLRDVEPEDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++  + ILT+ ++ L  QYK+L + EG+ L+F ED++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEELDEAAMKQILTEPKNALTKQYKKLFEMEGVELEFREDALLAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D+ F
Sbjct: 357 KALARKT-----GARGLRSILEQALLDVMF 381


>gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
 gi|254763858|sp|C3MA45|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRSPEDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAK 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     +   GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 361 RAI-----IRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404


>gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           S19]
 gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
 gi|238689370|sp|B2S5W0|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19]
 gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
          Length = 424

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  T+ GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTQAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|240850275|ref|YP_002971668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
 gi|240267398|gb|ACS50986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
          Length = 424

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+ +    IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPIVATLEDLDVNALMQILSQPKNALVKQYQRLFEMENVELSFHEDALRVIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L +  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402


>gi|163868072|ref|YP_001609276.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
 gi|189082484|sp|A9ISA8|CLPX_BART1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161017723|emb|CAK01281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
          Length = 424

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIIAVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+ +    IL+  ++ L+ QY+ L + E + L F ED++ A+A 
Sbjct: 300 IPEFIGRLPIVATLEDLDVNALMQILSQPKNALVKQYQRLFEMENVELAFHEDALRAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L +  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402


>gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
 gi|166214795|sp|A6X117|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
          Length = 424

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R   Q   +D+  EL   NILLVGPTG 
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKSSDI--ELAKSNILLVGPTGC 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 GKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRSVDERRIGDVFRELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMESVELSFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVV 402


>gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
           1021]
 gi|307301081|ref|ZP_07580850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
 gi|307317815|ref|ZP_07597253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|21263475|sp|Q92QQ2|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit
           [Sinorhizobium meliloti 1021]
 gi|306896577|gb|EFN27325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|306904036|gb|EFN34622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
          Length = 425

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 361 RAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404


>gi|149194750|ref|ZP_01871845.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135173|gb|EDM23654.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 404

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 55/228 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 170 GIVFIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKHPHQEFIQI 229

Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314
           +T +ILFI  GAF                                 +  P DL     +P
Sbjct: 230 DTTNILFICGGAFEGLEEIIQRRLEGATVGFLGKTKEKLSKDDIFSLVEPEDLVKYGLIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR PV   LK L+K D   +L + +  LI QYK L   +G+ L+F +D+++A+A+ A
Sbjct: 290 EIVGRLPVIATLKELDKEDLIRVLVEPKDALIKQYKALFAIDGVELEFEKDALEAIAEKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           +   +     GAR L+ ++E ++ DI F+  D +   VVI  + V  H
Sbjct: 350 IKRGT-----GARGLRAILEEIMVDIMFNLPDYKGYKVVITKDVVENH 392



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 73/114 (64%), Gaps = 2/114 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
            +P+EI + LD Y+IGQ+ AK+ +++A+ N ++R  L  D +D E+   NIL++GPTG G
Sbjct: 57  LTPKEIKAHLDEYVIGQERAKKIISVAVYNHYKRI-LYGDTQDVEIQKSNILMIGPTGSG 115

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT I+R LA+L   P    + T  TE GYVG +VE ++  L+  A   ++++ R
Sbjct: 116 KTLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAADGDIKKAER 169


>gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
 gi|166215207|sp|A6U7U8|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
          Length = 425

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 361 RAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVK 404


>gi|49474140|ref|YP_032182.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana
           str. Toulouse]
 gi|61211489|sp|Q6G177|CLPX_BARQU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49239644|emb|CAF26004.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           quintana str. Toulouse]
          Length = 424

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           NT +ILFI  GAF                     V  P +                   L
Sbjct: 240 NTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+ +    IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPIVATLEDLDVNALVQILSQPKNALVKQYQRLFEMENVELAFHEDALRVIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L +  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPTLEGVQKVVISSDVV 402


>gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
 gi|171769684|sp|A7HY53|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
          Length = 421

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  SPQEICGVLDDYVIGQQHAKRVLSVAVHNHYKRLNHAAKNNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFHVSR----------------------------------PADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTTNILFICGGAFAGLEKIIGQRGKGAGIGFGAKVQSVEDRRTGDILKDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + L F+E+++ A++ 
Sbjct: 298 IPEFVGRMPVLATLEDLDEEALLTILTQPKNALVKQYERLFEMENVRLTFSEEALRAVSR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    L+  + VVI AE V
Sbjct: 358 KAIERKT-----GARGLRSILESILLDTMFELPTLEGVEEVVISAEVV 400


>gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
 gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
          Length = 424

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKSVDERRIGDVFRELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELSFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVV 402


>gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
 gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
          Length = 424

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|254719173|ref|ZP_05180984.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           83/13]
 gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
 gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
          Length = 424

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV     V   GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAV-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|225010438|ref|ZP_03700909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-3C]
 gi|225005267|gb|EEG43218.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-3C]
          Length = 410

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313
           NT++ILFIA GAF      +S+                            P DL     +
Sbjct: 234 NTENILFIAGGAFDGIEKKISKRLNLQALGYSASKADEGLDNENILQYITPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+K   R ILT  ++ +I QY++L + + I L+  E+++D L + 
Sbjct: 294 PEIIGRLPVLTHMNPLDKKTLRAILTQPKNAIIKQYEKLFEMDHIALEINEEALDFLVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A+        +GAR L+++ E V  D  FS    +EK   +D  Y 
Sbjct: 354 ALEYK-----LGARGLRSLCESVFTDAMFSLPSSEEKEFKVDRAYA 394



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD++IIGQ   K+ +++A+ N ++R  L  + +D  E+   NI++VG TG GK
Sbjct: 62  PIEIKDFLDQFIIGQDRTKKVLSVAVYNHYKRL-LQQNTKDDVEIQKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|254704396|ref|ZP_05166224.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           3 str. 686]
 gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
 gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
          Length = 424

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAK  +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKSVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 KAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402


>gi|225387260|ref|ZP_03757024.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme
           DSM 15981]
 gi|225046637|gb|EEG56883.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme
           DSM 15981]
          Length = 477

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 185/423 (43%), Gaps = 91/423 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP----------KNIL 57
           +P +I + LD Y++GQ+ AK+ V++A+ N ++R  L     +E +            NIL
Sbjct: 123 APHQIKARLDEYVVGQEKAKKVVSVAVYNHYKRAFLGGKPEEETVSGPDEEVTIEKSNIL 182

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +
Sbjct: 183 MIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVARA 242

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
                 E+  I  +E  +D +  K  T NTR+V       GE   +E+ +++ + S+   
Sbjct: 243 ------EKGIIFIDE--IDKIAKKKQT-NTRDV------SGESVQQEL-LKLLEGST--- 283

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
             ++P G+     N     +  M +     I       +P+L     +RL    ++    
Sbjct: 284 -VEVPVGS-----NQKNAMTP-MATVNTDNILFICGGAFPDLEEIIKERLTKKSSM---- 332

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
                 +G V  D FDK                   +LL  V    + T +G I      
Sbjct: 333 -----GFGAVLRDTFDK-----------------DPNLLSYVTNEDLRT-FGMI------ 363

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                           PE  GR P+ V L+ L++     IL + ++ +  QY++L+  + 
Sbjct: 364 ----------------PEFLGRLPMTVTLQGLDRDMMVRILREPKNAITKQYEKLLAMDE 407

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDA 416
           + L F +D++D +A  A+   +     GAR L+ ++E  + DI +    D    +VV+  
Sbjct: 408 VRLVFEDDALDWIAGEAIKRGT-----GARALRAILEEFMLDIMYEIPKDSNIGSVVVTR 462

Query: 417 EYV 419
            Y+
Sbjct: 463 PYL 465


>gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit [Paracoccus
           denitrificans PD1222]
 gi|166214797|sp|A1B1H7|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus
           denitrificans PD1222]
          Length = 421

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI + LD Y+IGQ+ AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICNVLDDYVIGQEHAKRVLSVAVHNHYKRLNHSSKTDIELAKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 93/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDRIIAQRNKGTAMGFGAAVKEDDDKGVGELFKQLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L   E + L FTED++ A+A 
Sbjct: 297 IPEFVGRLPVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ME +L D  F
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMF 381


>gi|294672821|ref|YP_003573437.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prevotella
           ruminicola 23]
 gi|294472231|gb|ADE81620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           ruminicola 23]
          Length = 412

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ DAKR +A+A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 66  PKEIKEYLDQYVIGQDDAKRYLAVAVYNHYKRLQQPVDDDGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R
Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 177



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 238 DTRNILFICGGAFDGIERKIAQRMNTHVVGYNSVTNVRKIDKNDLMKYIVPQDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  HL  L++     ILT+ ++++I QYK+L + +G+ L F ++++D L D 
Sbjct: 298 PEIIGRLPVLTHLNPLDRKALERILTEPKNSIIRQYKKLFEMDGVALTFDQEALDTLVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           AV        +GAR L++++E V+ D  +     + K   + A+YV
Sbjct: 358 AVEYK-----LGARGLRSIVESVMMDAMYDLPSKKTKKFNVTADYV 398


>gi|299141493|ref|ZP_07034629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris C735]
 gi|298576829|gb|EFI48699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris C735]
          Length = 414

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                     +P DL     +
Sbjct: 238 NTKNILFICGGAFDSIERKIAQRMNTHVVGYNSVQNVAKIDKNDLMKYVQPMDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + ++++I QY++L + +GI L F ED+++ + D 
Sbjct: 298 PEIIGRLPVLTYLNPLDREALRCILVEPKNSIIKQYEKLFEMDGIKLSFEEDTLNFIVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     + K  V+  +Y +
Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYAK 399



 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++++ N ++R Q PAD    E+   NI++VG TG GKT
Sbjct: 66  PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168


>gi|303236760|ref|ZP_07323339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           disiens FB035-09AN]
 gi|302482928|gb|EFL45944.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           disiens FB035-09AN]
          Length = 408

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD YIIGQ +AKR +A+A+ N ++R Q P +  D E+   NI++VG TG GKT
Sbjct: 63  PKEIKAYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKEDDDVEVEKSNIIMVGSTGTGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 123 LLARTIAKLLNVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 165



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 234

Query: 292 NTDHILFIASGAF-------------HVS-------------------------RPADLL 313
           +T +ILFI  GAF             HV                          R   L+
Sbjct: 235 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKKDLMKYVLPQDLRSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L FT +++D + D 
Sbjct: 295 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGINLSFTNEALDYIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ +  F     + K   + A Y +
Sbjct: 355 AVEYK-----LGARGLRSIVEAVMMEQMFELPSKRVKKYEVTASYAK 396


>gi|149369720|ref|ZP_01889572.1| ATP-dependent protease ATP-binding subunit [unidentified
           eubacterium SCB49]
 gi|149357147|gb|EDM45702.1| ATP-dependent protease ATP-binding subunit [unidentified
           eubacterium SCB49]
          Length = 423

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 187 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 246

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313
           NT++ILFIA GAF     H+S+                            P DL     +
Sbjct: 247 NTENILFIAGGAFDGINRHISKRLNLQSVGFSATHKEEQLDKDHMLKYIIPKDLKDFGLI 306

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  ++  L+ +  R ILT+ ++ +I QYK+L + + I L  TE+ +D + + 
Sbjct: 307 PEIIGRLPVLTYMNPLDNATLRAILTEPKNAIIKQYKKLFEMDDIELIITEEGLDFIVEQ 366

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L+++ E VL D  +       K + ++ EYV+
Sbjct: 367 AIEYK-----LGARGLRSLCEAVLTDAMYELPGTDVKQLSVNVEYVK 408



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+ I + LD Y+IGQ   K+ +++A+ N ++R   P    D E+   NI++VG TG GKT
Sbjct: 75  PKMIKTFLDDYVIGQDHTKKVMSVAVYNHYKRLLQPKTEDDIEIQKSNIIMVGQTGTGKT 134

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 135 LVAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 177


>gi|332878106|ref|ZP_08445836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684068|gb|EGJ56935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILFI  GAF                         H+ +        P DL     +
Sbjct: 236 DTRNILFICGGAFDGIEKKIAQRMNTHVVGYNSVQNMQHIDKSNLMKYILPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ +++++ Q  +L + +GI L F ED+++ + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMDGIKLSFDEDTLEYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV  N     +GAR L+++ME ++ D  F     + KT  +  EY +
Sbjct: 356 AVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTLEYAK 397



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PR+I + LD+Y+IGQ DAKR +A+A+ N ++R  Q  +D   E+   NI++VG TG GKT
Sbjct: 64  PRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V+ ++R
Sbjct: 124 LLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAAQR 175


>gi|227432008|ref|ZP_03914028.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352293|gb|EEJ42499.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 416

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R  + +   L  EL   NI L+GPTG G
Sbjct: 64  TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV ++ G          +
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTTASVPSQGGRKHPQQELIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPAD----- 311
           NT +ILFI  GAF                                   H  +P D     
Sbjct: 238 NTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANENAEALNDDNILHHVQPEDMTKFG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L  SD   ILT+ ++ LI QY  L+  + + L+F  D++DA+A
Sbjct: 298 LIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVELEFQPDALDAMA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            VA+  ++     GAR L++++E V++D+ F
Sbjct: 358 SVAIKRHT-----GARGLRSIIENVMKDVMF 383


>gi|262199990|ref|YP_003271199.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
 gi|262083337|gb|ACY19306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
          Length = 402

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 19/156 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP EIV ELDRY++GQ  AKRA+++A+ N ++R  +     D EL   NILL+GPTG GK
Sbjct: 52  SPHEIVGELDRYVVGQGRAKRALSVAVYNHYKRIGMRGKSADVELQKGNILLIGPTGCGK 111

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA+    PF   + T  TE GYVG +VE +I+ L   A   V ++ R     DE
Sbjct: 112 TLLAQTLAKKLDVPFAIADATTLTEAGYVGEDVESVIKALFRAAGGDVEKTARGILCIDE 171

Query: 122 V-------------REQASINAEERILDALVGKTAT 144
           +             R+ +    ++ +L  L GKTAT
Sbjct: 172 IDKIARKGGSPSPTRDVSGEGVQQALLKILEGKTAT 207



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 58/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVS-TKYGS---------- 290
           GI+ +DE DKI AR  G+      VS EGVQ+ LL ++EG + + T  G+          
Sbjct: 165 GILCIDEIDKI-ARKGGSPSPTRDVSGEGVQQALLKILEGKTATITPDGARNRPQQELIQ 223

Query: 291 INTDHILFIASGAFH---------------------------------VSRPADL----- 312
           I+T  ILFI +GAF+                                  +R  DL     
Sbjct: 224 IDTTDILFICTGAFNGLEDIVRRRVGERGLGFGAAIGTAQDDKDALRATARAEDLTKFGM 283

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V   +L   +   +L   ++ L  QY+ L   E + L FT+D++ A+A+
Sbjct: 284 IPEFMGRLPVVVSCDALGVDELSEVLWRPKNALSRQYERLFALEDVKLTFTQDALRAVAE 343

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A    S     GAR L+ ++E ++ D+ +    L
Sbjct: 344 EAHRRRS-----GARGLRAILEEIMLDVMYEIPSL 373


>gi|225023958|ref|ZP_03713150.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
 gi|224942983|gb|EEG24192.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
          Length = 418

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EIVS L++++IGQ+ AK+ +A+A+ N ++R + P +  + EL   NILL+GPTG GK
Sbjct: 60  TPAEIVSNLNQHVIGQEQAKKVLAVAVYNHYKRLRYPKEGDNVELAKSNILLIGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 120 TLLAQSLARRLDVPFVMADATTLTEAGYVGEDVEQIITKLL 160



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 173 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 232

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 233 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDEDADVTELFEIVEPEDLIKFG 292

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + EG+ L     ++ ++A
Sbjct: 293 LIPELIGRLPVIATLAELDEEALISILTEPKNALVKQYQTLFEMEGVELKVQPSALRSIA 352

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVID 415
            +A+   +     GAR L++++ER L +  F   D++E  KTVVID
Sbjct: 353 KLAMQRKT-----GARGLRSIVERALLETMFRLPDIKEQVKTVVID 393


>gi|307610563|emb|CBX00151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila 130b]
          Length = 424

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310
           +T +ILFI  GAF                               VS+             
Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K EG  L+F ++++ A+
Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+        +GAR L++++E +L D  +    L+    VVID   V
Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401


>gi|54294747|ref|YP_127162.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila
           str. Lens]
 gi|148359405|ref|YP_001250612.1| ATP-dependent Clp protease ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|296107451|ref|YP_003619151.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|61211413|sp|Q5WVJ1|CLPX_LEGPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214781|sp|A5ID16|CLPX_LEGPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53754579|emb|CAH16063.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Lens]
 gi|148281178|gb|ABQ55266.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|295649352|gb|ADG25199.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 424

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310
           +T +ILFI  GAF                               VS+             
Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K EG  L+F ++++ A+
Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+        +GAR L++++E +L D  +    L+    VVID   V
Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401


>gi|116618615|ref|YP_818986.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271185|sp|Q03W09|CLPX_LEUMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116097462|gb|ABJ62613.1| ATP-dependent protease Clp, ATPase subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 416

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R  + +   L  EL   NI L+GPTG G
Sbjct: 64  TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTTASVPPQGGRKHPQQELIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPAD----- 311
           NT +ILFI  GAF                                   H  +P D     
Sbjct: 238 NTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANENAEALNDDNILHHVQPEDMTKFG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L  SD   ILT+ ++ LI QY  L+  + + L+F  D++DA+A
Sbjct: 298 LIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVELEFQPDALDAMA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            VA+  ++     GAR L++++E V++D+ F
Sbjct: 358 SVAIKRHT-----GARGLRSIIENVMKDVMF 383


>gi|317504965|ref|ZP_07962913.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae
           DSM 15606]
 gi|315663847|gb|EFV03566.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae
           DSM 15606]
          Length = 414

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           +T +ILFI  GAF             HV                     +P DL     +
Sbjct: 238 DTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKSDLMKYVQPMDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + ++++I QYK+L + +GI L F ED++D + D 
Sbjct: 298 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYKKLFEMDGIKLSFEEDTLDFIVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     + K  V+  +Y +
Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEVPSKRMKDFVVTLDYAK 399



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++++ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 66  PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPTDEDGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168


>gi|54297777|ref|YP_124146.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
 gi|61211415|sp|Q5X452|CLPX_LEGPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53751562|emb|CAH12980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
          Length = 424

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T +ILFI  GAF      +   +D                                   
Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEASKVLGQLESDDLIKY 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K EG  L+F ++++ A+
Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+        +GAR L++++E +L D  +    L+    +VID   V
Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKIVIDESVV 401


>gi|304383400|ref|ZP_07365866.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii
           DSM 16973]
 gi|304335568|gb|EFM01832.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii
           DSM 16973]
          Length = 412

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ +AKR +++++ N ++R Q PAD +  E+   NI++VG TG GKT
Sbjct: 64  PKEIKKYLDDYVIGQDEAKRYLSVSVYNHYKRLQQPADDKGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIARLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILFI  GAF                         H+ +        P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVRHIDKTDLMKYILPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL   ++++I QY +L + +GI L F  + +D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRNILVTPKNSIIKQYVKLFQMDGIELTFDNEVLDFIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L++++E ++ +  +     + K   +  +Y R  +
Sbjct: 356 AMEYK-----LGARGLRSIVEAIMMNAMYEVPSKRLKQFKVTPDYARAQL 400


>gi|61211423|sp|Q5ZUE0|CLPX_LEGPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 424

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310
           +T +ILFI  GAF                               VS+             
Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K EG  L+F  +++ A+
Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRGEALIAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+        +GAR L++++E +L D  +    L+    VVID   V
Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401


>gi|52842085|ref|YP_095884.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629196|gb|AAU27937.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 426

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 67  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310
           +T +ILFI  GAF                               VS+             
Sbjct: 239 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 298

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K EG  L+F  +++ A+
Sbjct: 299 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRGEALIAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+        +GAR L++++E +L D  +    L+    VVID   V
Sbjct: 359 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 403


>gi|163815264|ref|ZP_02206641.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
 gi|158449459|gb|EDP26454.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI S LD Y+IGQ++AK+ +A+A+ N ++R     D   EL   NIL+VGPTG GK
Sbjct: 83  LKPKEIKSFLDEYVIGQEEAKKVLAVAVYNHYKRILAQKDFDVELQKSNILMVGPTGSGK 142

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 143 TYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 186



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 195 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 254

Query: 291 INTDHILFIASGAFH---------VSR-------------------------PAD----- 311
           I+T +ILFI  GAF          V +                         P D     
Sbjct: 255 IDTTNILFICGGAFEGLEKIIENRVGQKSIGFNAEVVEQSEQDIGQLLKQVMPHDFVKYG 314

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV V L  L++     ILT+  S +  QYK+L + +G+ L+  +D++  +A
Sbjct: 315 LIPEFVGRVPVAVTLDLLDEDALVRILTEPRSAICKQYKKLFELDGVELEIEDDALREIA 374

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+ +ME    ++ +
Sbjct: 375 KEAMERKT-----GARGLRAIMENATLNLMY 400


>gi|227495368|ref|ZP_03925684.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
 gi|226831122|gb|EEH63505.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
          Length = 417

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RDELMPKNILLVGPTGV 64
           P+EI   L++Y+IGQ+DAKRA+++A+ N ++R    A L      EL   NILL+GPTG 
Sbjct: 64  PKEIFDFLNQYVIGQEDAKRALSVAVYNHYKRLNAEAILGYPVEMELTKSNILLLGPTGT 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 GKTHLARSLARLLQVPFSIVDATALTEAGYVGEDVENILLKLIQDADGDIEKAQR 178



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPHQQFIEI 238

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                             DL              +P
Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGKRTLGFGSELKSAHEYGDLYSQVTSEDLHKFGMIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +K+L++ D   +LT+ ++ L+ QY++L   + + L+FT D++  +A  A
Sbjct: 299 EFIGRLPVVTSVKNLDEDDLVRVLTEPKNALVRQYQQLFVLDDVELEFTRDALREIARKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             L +     GAR L +++E+ L  I F    + +   VI
Sbjct: 359 NELKT-----GARALNSILEKTLAPIMFEVPSMPQIAKVI 393


>gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
 gi|166214751|sp|A0LSV2|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
          Length = 427

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           PREI   LD+Y+IGQ+ AK+A+++A+ N ++R Q+    R      EL   NILL+GPTG
Sbjct: 64  PREICEFLDQYVIGQETAKKALSVAVYNHYKRIQVGGSSRSSNDSVELAKSNILLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 CGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313
           +T +ILFI  GAF                      H  R            P DLL    
Sbjct: 240 DTTNILFIVGGAFAGLEKIIEARIGKKGIGFTATLHGKRDLNTADIFSHVMPEDLLKYGM 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + SL++     ILT+ ++ L+ QY+ L + + + L+FT+D+++A+AD
Sbjct: 300 IPEFVGRLPVITTVTSLDREALIRILTEPKNALVRQYQRLFELDSVDLEFTDDALEAIAD 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLLSVMY 384


>gi|229827569|ref|ZP_04453638.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC
           49176]
 gi|229788207|gb|EEP24321.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC
           49176]
          Length = 429

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 5   FN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           FN + P +I   LD+Y+IGQ DAK+A+A+A+ N ++R  +   L  EL   NI++VGPTG
Sbjct: 58  FNLYKPEQIKDFLDQYVIGQDDAKKALAVAVYNHYKRVSMGKSLDVELQKSNIVMVGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 118 SGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENVLLKLIQSA 164



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 58/221 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  
Sbjct: 173 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKMLEGTVASVPPQGGRKHPHQEFLQ 232

Query: 291 INTDHILFIASGAFH----------------------------VSR------PAD----- 311
           I+T  ILFI  GAF                             VS       P D     
Sbjct: 233 IDTKDILFICGGAFDGIEKIIESRIDKKSIGFGGEIEDKSKKDVSELLKQLEPQDFVKFG 292

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR P+ V L  L+++    I+T+ ++ ++ QYK+L++ +G+ L+F +++I  +A
Sbjct: 293 MIPEFIGRVPILVTLDLLDENALMRIITEPKNAMVKQYKKLLEFDGVELEFEDEAIREIA 352

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                  S     GAR L+++ME+ + D  F+    +EK V
Sbjct: 353 K-----QSAARKTGARGLRSIMEKTMLDTMFTIPS-EEKAV 387


>gi|293977811|ref|YP_003543241.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Sulcia muelleri DMIN]
 gi|292667742|gb|ADE35377.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Sulcia muelleri DMIN]
          Length = 344

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 54/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  ++    I   VS EGVQ+ LL ++EGS V+            K   +
Sbjct: 123 GIVFIDEIDKISRKNDNPSITRDVSGEGVQQALLKILEGSIVNVPPNVGRKHPEQKLIKL 182

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLLPEI 316
           NT +ILFIA GAF                                   H  +   L+PE+
Sbjct: 183 NTKNILFIAGGAFEGLKNIISNRLNLSTIGFKKNVSIDGKDLLNFVSSHDLKKFGLIPEL 242

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+  +L SL +   + IL +  +++I QYKEL   + I L FT  +ID + D A+ 
Sbjct: 243 IGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLKFTYSAIDLIVDKAIK 302

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           L+     +GAR L+T+ E++++D  F+  DL +++++ID   ++L
Sbjct: 303 LS-----LGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 341



 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SPREI   LD+Y+IGQ+DAK+ +++A+ N ++R       + E+   NIL++G TG GKT
Sbjct: 11  SPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGDTGTGKT 70

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            I++ +++    PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 71  LIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSA 113


>gi|317139980|ref|XP_003189221.1| ATP-dependent Clp protease [Aspergillus oryzae RIB40]
          Length = 627

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 188/460 (40%), Gaps = 89/460 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE---------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q+L    RDE                
Sbjct: 131 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQEL--QRRDEEAVELLAKRARRESVD 188

Query: 51  ------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
                 L   NILL+GP+GVGKT +++ LA++   PF   + T FT+ GY+G + E  + 
Sbjct: 189 HSSTIQLEKSNILLLGPSGVGKTLMAKTLAKVLSVPFSISDCTPFTQAGYIGEDAEVCVH 248

Query: 105 DLVDVAINIVRESRR-----DEVREQASINAE-------ERILDALVGKTATSNTREVFR 152
            L+  A   V ++ R     DEV + A+           E +  AL+ K     T +V  
Sbjct: 249 RLLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVGGEGVQQALL-KIIEGTTVQVQA 307

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K+ ++   +    +     ++S + N   P     G+    E+++      R   I    
Sbjct: 308 KQEKNAPRAGGTPN--TYPSNSPLGNSPYPPSNGGGMSQKGEVYNV-----RTDNILFIF 360

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
              +  L +      + MD + R SI         F          D   G   +     
Sbjct: 361 SGAFVGLHK------VVMDRISRGSIG--------FGQPVRTPSNSDERPGQSTT---AN 403

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL-----LP 314
              +P+V GS     Y      H+ F  S              A  +  P DL     +P
Sbjct: 404 NQPVPIVPGSEEEALY----KKHLPFFTSASPESPDGEPTYFNALDLINPTDLQNYGFIP 459

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L +L +     ILT+  ++L+ QY  L    GI L FT  ++  +A  A
Sbjct: 460 ELVGRVPVTAALSTLTQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIAANA 519

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             + +     GAR L+T ME +L D  +       K V++
Sbjct: 520 FTMGT-----GARALRTEMETILSDAMYETPGSSVKFVLV 554


>gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
 gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
          Length = 421

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ ++
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED++ ++A
Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V
Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVV 403


>gi|161833701|ref|YP_001597897.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Sulcia
           muelleri GWSS]
 gi|152206191|gb|ABS30501.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus Sulcia
           muelleri GWSS]
          Length = 343

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 54/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  ++    I   VS EGVQ+ LL ++EGS V+            K   +
Sbjct: 122 GIVFIDEIDKISRKNDNPSITRDVSGEGVQQALLKILEGSIVNVPPNVGRKHPEQKLIKL 181

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLLPEI 316
           NT +ILFIA GAF                                   H  +   L+PE+
Sbjct: 182 NTKNILFIAGGAFEGLKNIISNRLNLSSIGFKKNVSIDGKDLLNFVSSHDLKKFGLIPEL 241

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+  +L SL +   + IL +  +++I QYKEL   + I L FT  +ID + D A+ 
Sbjct: 242 IGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLKFTYSAIDLIVDKAIK 301

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           L+     +GAR L+T+ E++++D  F+  DL +++++ID   ++L
Sbjct: 302 LS-----LGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 340



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SPREI   LD+Y+IGQ+DAK+ +++A+ N ++R       + E+   NIL++G TG GKT
Sbjct: 10  SPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGDTGTGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            I++ +++    PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 70  LIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSA 112


>gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
          Length = 432

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EI + LD Y+IGQ +AK+A+++A+ N ++R   P  L  EL   NIL++GPTG GK
Sbjct: 65  MTPQEIHNFLDEYVIGQDEAKKALSVAVYNHYKRVMAPKSLDVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+L   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 176 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 235

Query: 290 SINTDHILFIASGAFH------VSR----------------------------PAD---- 311
            I+T +ILFI  GAF        +R                            P D    
Sbjct: 236 QIDTTNILFICGGAFEGLEKIIATRKDQKSIGFGADVRSAKEHNVGELLREVMPEDFIKF 295

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV V L +L++     IL + +++L+ QY++L + +G+ LDF +D++  +
Sbjct: 296 GLIPEFIGRVPVVVSLNALDEEALIRILQEPKNSLVKQYRKLFELDGVELDFQKDALKLI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+ ++   +     GAR L+++ME  + D+ +   SD   +  VI  E V
Sbjct: 356 AEKSLERKT-----GARGLRSIMESTMMDLMYQVPSDHTIQKCVITKEAV 400


>gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
 gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
          Length = 421

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 61/237 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ ++
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR P+   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED++ ++A
Sbjct: 300 LIPELIGRLPMIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVSLEFEEDALRSIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V    GD P
Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYALPDLKDVAKVVINKEVVEK--GDQP 409


>gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
 gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
          Length = 421

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ ++
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED++ ++A
Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +A+   +     GAR L++++ER L D  ++  DL+    VVI+ E V
Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYALPDLKGVAKVVINKEVV 403


>gi|326790231|ref|YP_004308052.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           lentocellum DSM 5427]
 gi|326540995|gb|ADZ82854.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           lentocellum DSM 5427]
          Length = 428

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ+DAK+A+A+A+ N ++R    +   D E+   NILL+GPTG GKT
Sbjct: 65  PKEIKAHLDEYVIGQEDAKKALAVAVYNHYKRIYKQSKSNDVEVQKSNILLLGPTGTGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAQTLAKMLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312
           +T +ILFI  GAF                      VS+             P DL     
Sbjct: 237 DTTNILFICGGAFDGLDKIIERRVGQKSMGFGANIVSKKEKSIGELFKQIEPQDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P  V L +L+K     ILT+ ++ L  QY+ L + +GI L+F E+++ A+A+
Sbjct: 297 IPEFVGRIPSIVSLNNLDKEALIKILTEPKNALTKQYEHLFELDGIKLEFEEEALVAVAE 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYVR 420
           +A+   +     GAR L+ + E ++ +I + A  + +  + ++I A+ ++
Sbjct: 357 LAIERET-----GARGLRAIFETMMRNIMYDAPSMGDALEKIIIHADVIK 401


>gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
 gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
          Length = 421

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ ++
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+F ED++ ++A
Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFAMEDVGLEFEEDALRSIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V
Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVV 403


>gi|329119329|ref|ZP_08248015.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464474|gb|EGF10773.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 422

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           SP EIV+ L+ ++IGQ+ AK+A+A+A+ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 62  SPAEIVANLNDHVIGQEQAKKALAVAVYNHYKRLRHPKASDNVELSKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 122 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 162



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 175 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILF+  GAF                                    +  P DL+   
Sbjct: 235 DTTNILFVCGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADISELFEIVEPEDLIKFG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L++ EG  L+F + ++  +A
Sbjct: 295 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQALIRMEGAELEFEDAALRGIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
            +A+   +     GAR L++++ER L +  +    L Q K V++ AE +
Sbjct: 355 KLAMTRKT-----GARGLRSIVERALLETMYLLPGLPQVKKVIVTAEVI 398


>gi|209964555|ref|YP_002297470.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum
           centenum SW]
 gi|238066659|sp|B6ISY6|CLPX_RHOCS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209958021|gb|ACI98657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodospirillum centenum SW]
          Length = 421

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPR+I + LD Y+IGQ+ AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  SPRDICAVLDDYVIGQEHAKRVLSVAVHNHYKRLAHGAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLERIIAARGKGTSIGFGADVRAPDERRTGDILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L   E+++ ++A 
Sbjct: 298 IPEFVGRLPVVATLHDLDENALIEILTKPKNALVKQYQRLFEMEDVKLGIHEEALRSIAV 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L +  F    LQ  + +VI+ E V
Sbjct: 358 KAIQRKT-----GARGLRSIMESILLEPMFDLPGLQGVEEIVINKEVV 400


>gi|126462594|ref|YP_001043708.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639634|ref|YP_002525896.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides KD131]
 gi|332558620|ref|ZP_08412942.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
 gi|166215194|sp|A3PKS0|CLPX_RHOS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763860|sp|B9KJU8|CLPX_RHOSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126104258|gb|ABN76936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160415|gb|ACM01395.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodobacter
           sphaeroides KD131]
 gi|332276332|gb|EGJ21647.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
          Length = 421

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDARGVGELFKELEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L D  F    L
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|149926125|ref|ZP_01914387.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
 gi|149824943|gb|EDM84155.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
          Length = 423

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI S LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRSILDQYVIGQDKAKRVLAVAVYNHYKRLRHMSKKDDIELTKSNILLVGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYEVEKAQR 177



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQI 237

Query: 292 NTDHILFIASGAFH----VSR------------------------------PADLL---- 313
           +T ++LFI  GAF     V R                              P DL+    
Sbjct: 238 DTTNVLFIVGGAFEGLDKVIRNRSERSGIGFGATVKSKEEGNVGTLLAEVEPEDLIKFGI 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L+ L++     ILT  ++ ++ Q+++L++ +G  L+    ++ A+A 
Sbjct: 298 IPELVGRLPVIATLEELDEPALIEILTKPKNAMVKQFEKLLEMDGAELEVRPSALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
            A+   +     GAR L+T++E+ L  I +    D   K VVID
Sbjct: 358 KAIQRKT-----GARGLRTILEQALLGIMYDLPGDTNVKKVVID 396


>gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp.
           1501(2011)]
          Length = 425

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 14/117 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI   LD Y+IGQ+ AK+A+++A+ N ++R ++ A L D              EL  
Sbjct: 67  TPKEIRQHLDSYVIGQETAKKALSVAVYNHYKRLKVAAKLADDRKQAKIGADDAMVELSK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 183



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   +G           +
Sbjct: 193 GIIYVDEIDKISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQELIQV 252

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +IL I  GAF                                       P DL+   
Sbjct: 253 DTSNILIIVGGAFSGLDKVIQQRTEKSGIGFNAEVKSKEDGKQLTELFKQVEPEDLIKFG 312

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + E   L FTE+ + A+A
Sbjct: 313 LIPELIGRLPVIATLEELDEDALMQILTEPKNAIIKQYQYLFEMEDAELTFTEEGLKAIA 372

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E  L D  +    + E KTVV+D
Sbjct: 373 HKAMERKT-----GARGLRSIVENALLDTMYELPSMSEAKTVVVD 412


>gi|320546908|ref|ZP_08041210.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
 gi|320448426|gb|EFW89167.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
          Length = 409

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R    AD RDE    L   NILL+GPTG 
Sbjct: 64  PKELLATLDEYVVGQERAKRALAVAVYNHYKRVSF-ADSRDEEDVELQKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNRKIDEDASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F ED++ A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     +E T V
Sbjct: 358 IKRKT-----GARGLRSIIEETMMDIMFEIPSREEVTKV 391


>gi|116334975|ref|YP_802470.1| ATP-dependent protease ATP-binding subunit [Candidatus Carsonella
           ruddii PV]
 gi|116235256|dbj|BAF35104.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Carsonella ruddii PV]
          Length = 355

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 4   TFNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           + NFS    P +I  ELDRYIIGQ + K+ +++A+ N ++R  L    +  L   NI+LV
Sbjct: 10  SINFSNYLNPEKIKLELDRYIIGQNETKKIISVAVYNHYKRLFLIKSKKILLEKSNIILV 69

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT + + LA++   P I V+ T FTE GYVG +VE II+ L+
Sbjct: 70  GPTGCGKTLMVKTLAKIVNVPIICVDATSFTEAGYVGDDVESIIQKLL 117



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 49/196 (25%)

Query: 246 IVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST----------KYGSINTD 294
           I+++DE DKI  + D  +G  VS EGVQ+ +L L+EG ++S           +  +I+T 
Sbjct: 131 IIYIDEIDKISKKTDFFSGKDVSGEGVQQSMLKLIEGITLSIPSLVEKKNSQQIFNIDTT 190

Query: 295 HILFIASGAF----------------------------HVSRPADLL-----PEIQGRFP 321
           +ILFI  GAF                            + +   DL+     PE  GR P
Sbjct: 191 NILFIVGGAFSGIESIINFRINQELNFIKKNFELTDIINYTSSEDLINFGIIPEFLGRLP 250

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +    K L++S++  IL    ++LI Q+  L   EG+ + FT ++I  +A +AV      
Sbjct: 251 IIAKFKELSESEYIYILIKPRNSLIKQFCYLFLVEGVNIKFTFNAIKEIARIAVK----- 305

Query: 382 GDIGARRLQTVMERVL 397
             IGAR L++++E VL
Sbjct: 306 RKIGARGLKSILEFVL 321


>gi|281425295|ref|ZP_06256208.1| hypothetical protein HMPREF0971_02267 [Prevotella oris F0302]
 gi|281400588|gb|EFB31419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris F0302]
          Length = 414

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                     +P DL     +
Sbjct: 238 NTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKNDLMKYVQPMDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + ++++I QY++L + +GI L F ED+++ + D 
Sbjct: 298 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFEMDGIKLSFEEDTLNFIVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     + K  V+  +Y +
Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYAK 399



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++++ N ++R Q PAD    E+   NI++VG TG GKT
Sbjct: 66  PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168


>gi|296136116|ref|YP_003643358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
 gi|295796238|gb|ADG31028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
          Length = 420

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  TPTEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADL----- 312
           +T +ILFI  GAF                                    ++P DL     
Sbjct: 241 DTTNILFICGGAFDGLEKVIRNRSEKSGIGFSATVKTQSERSVSETFLQAQPDDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L++     ILT  +++L+ QY++L + +GI L+F   ++DA+A 
Sbjct: 301 IPELVGRLPVVAALEELDEPALVEILTAPKNSLVKQYQKLFEMDGIKLEFRPAALDAIAH 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E+ L D+ F   + Q   +VV+D
Sbjct: 361 KALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVD 399


>gi|325855154|ref|ZP_08171777.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola CRIS 18C-A]
 gi|325483891|gb|EGC86835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola CRIS 18C-A]
          Length = 412

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      +V+R           P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL D +++++ QY +L   +GI L FT+ ++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVDPKNSIVKQYVKLFSMDGITLSFTDPALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  F     + K+  +  EYVR  +
Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAI 69
           EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GKT +
Sbjct: 66  EIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKTLL 125

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 126 ARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166


>gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
 gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
          Length = 424

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AKR +++A+ N ++R    A   D EL   NILLVGPTG GK
Sbjct: 66  TPHEICEHLDQYVIGQAKAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ +ARL   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 126 TLLAQTMARLLDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 178



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 179 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    +V+ P +                   L
Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEERRTGETLQQCEPEDLLKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L+++    ILT  ++ L+ QY++L   EG+ L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVIATLMDLDEAALVEILTAPKNALVKQYQKLFDMEGVKLGFTDDALVAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 359 KAITRKT-----GARGLRSILEGLLLDTMF 383


>gi|294340352|emb|CAZ88733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiomonas sp.
           3As]
          Length = 422

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  TPAEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADL----- 312
           +T +ILFI  GAF                                    ++P DL     
Sbjct: 241 DTTNILFICGGAFDGLEKVIRNRSEKSGIGFSATVKTQSERSVSETFLQAQPDDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L++     ILT  +++L+ QY++L + +GI L+F   ++DA+A 
Sbjct: 301 IPELVGRLPVVAALEELDEPALIEILTAPKNSLVKQYQKLFEMDGIKLEFRPAALDAIAH 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E+ L D+ F   + Q   +VV+D
Sbjct: 361 KALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVD 399


>gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus]
          Length = 423

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTA 68
           R+I++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GKT 
Sbjct: 69  RQIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGKTY 128

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  +R
Sbjct: 129 LAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAR 178



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 58/227 (25%)

Query: 246 IVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           IV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  ++
Sbjct: 180 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVD 239

Query: 293 TDHILFIASGAFH-----VS-----------------------------RPADLL----- 313
           T +ILFI  GAF      +S                              P DLL     
Sbjct: 240 TTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D++ A+A+ 
Sbjct: 300 PEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           AV   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 360 AVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 401


>gi|325204365|gb|ADY99818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240355]
          Length = 414

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|237653229|ref|YP_002889543.1| ATP-dependent protease ATP-binding subunit ClpX [Thauera sp. MZ1T]
 gi|237624476|gb|ACR01166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thauera sp.
           MZ1T]
          Length = 422

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P EI S LD+Y+IGQ  AKR++A+A+ N ++R + L A   D EL   NILL+GPTG G
Sbjct: 66  TPHEICSILDQYVIGQSLAKRSLAVAVYNHYKRLRHLDARQDDVELAKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 126 KTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIVQKLL 167



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+  S+  + G          +
Sbjct: 180 GIIYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPNQDFIQV 239

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313
           +T ++LFI  GAF     V R                              P DL+    
Sbjct: 240 DTTNVLFICGGAFDGLEKVIRNRTEKVGIGFGAEVKSKEGKNLTDTFRQVEPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L+ L+++    IL + ++ L+ QY++L   EG+ L+   +++ A+A 
Sbjct: 300 IPELIGRLPVVATLQELDEAALIQILIEPKNALVKQYQKLFSMEGVELEIRPNALHAVAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L DI +    L     VV+D
Sbjct: 360 KAIKRKT-----GARGLRSILEVALLDIMYDLPTLDNVAKVVVD 398


>gi|297569272|ref|YP_003690616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925187|gb|ADH85997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 419

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 3/116 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRD-ELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +  L  D +D EL   NILL+GPTG
Sbjct: 63  LKPSEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGDLEGDYQDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A N V  + R
Sbjct: 123 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVSLLQAADNDVERASR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 60/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+  S            +Y  +
Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYIKL 238

Query: 292 NTDHILFIASGAFH--------------------------------VSRPAD-------L 312
           +T +ILFI  GAF                                 +++ A        L
Sbjct: 239 DTSNILFICGGAFVGLEQVIGQRAGSKSLGFGAKVVGKSKKKTGEILAQVASEDLLRYGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   +  L + D   IL + ++ L  QY++L   + I L FTE ++ A+A 
Sbjct: 299 IPELVGRLPVTATMDELEEEDLIRILREPKNALTRQYEKLFAFDDIRLRFTEGALAAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFP 427
            A+   +     GAR L++VME  + DI +   S    +  VI  + +  H  D+P
Sbjct: 359 EAIQRKA-----GARGLRSVMEAAMLDIMYDLPSQENVRECVISEQVITNH--DYP 407


>gi|237747782|ref|ZP_04578262.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
 gi|229379144|gb|EEO29235.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
          Length = 423

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +      D  EL   NILLVGPTG G
Sbjct: 67  TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKFYGGKNDDVELSKSNILLVGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQGCEYDVEKAQR 180



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         S+
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKMIEGTMASVPPQGGRKHPNQDFISV 240

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +I+FI  GAF                     V  P D                   L
Sbjct: 241 DTTNIMFICGGAFDGLTKIISNRSEKGGIGFSARVKSPTDIVESEKLADVEPEDLIKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L +     IL   ++ L+ QY +L++ EG  L+   +++ A+A 
Sbjct: 301 IPELIGRLPVVAVLHELTEEALVDILEKPKNALVKQYTKLLQMEGAELEIRPEALRAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D+ ++    Q  T VVID   V
Sbjct: 361 KALERKT-----GARGLRSIMENLLLDVMYNLPTEQNVTKVVIDENTV 403


>gi|238917376|ref|YP_002930893.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
 gi|259491257|sp|C4Z1T5|CLPX_EUBE2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238872736|gb|ACR72446.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
          Length = 422

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I   LD Y+IGQ +AK+ +A+A+ N ++R    +DL  EL   NIL++GPTG GK
Sbjct: 68  LKPKQIKEFLDDYVIGQDEAKKVLAVAVYNHYKRIMSQSDLDVELQKSNILMLGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 TFLAQNLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 57/212 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 179 QYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELI 238

Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADLL-- 313
            I+T +ILFI  GAF                                  H + P DL+  
Sbjct: 239 PIDTTNILFICGGAFDGLEKIIESRMDKSSIGFNSELKEKSNDDVGEMFHKALPQDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV V L SL++     IL + ++ +I QY+ L   + + L+FT+++++A+
Sbjct: 299 GLIPEFVGRVPVVVSLDSLDEEALVRILKEPKNAIIKQYQALFGLDEVALEFTDEAVEAV 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  +    +     GAR L++++E V+ ++ +
Sbjct: 359 AHKSFERKT-----GARGLRSILESVMNEVMY 385


>gi|184155096|ref|YP_001843436.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           fermentum IFO 3956]
 gi|227514779|ref|ZP_03944828.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
           ATCC 14931]
 gi|260663639|ref|ZP_05864528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226440|dbj|BAG26956.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086888|gb|EEI22200.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
           ATCC 14931]
 gi|260551865|gb|EEX24980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum 28-3-CHN]
          Length = 416

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P+EI+++LD Y+IGQQDAK+ +A+A+ N ++R    +  D  D EL   NI ++GPTG 
Sbjct: 63  TPQEILNQLDDYVIGQQDAKKTLAVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 60/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSKEINDVTEKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++D   ILT+ ++ L+ QY+EL++ +G  L FT  ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
            +A++ N+     GAR L++++E V+ DI F     Q+   VVI+ E V  H
Sbjct: 357 KMAIDRNT-----GARGLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKH 403


>gi|150026122|ref|YP_001296948.1| ATP-dependent protease ATP-binding subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772663|emb|CAL44146.1| S14 family, ATP-dependent Clp protease ATP-binding subunit
           [Flavobacterium psychrophilum JIP02/86]
          Length = 410

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PAD-----LL 313
           NT  ILFIA GAF      +S+                            P D     L+
Sbjct: 234 NTQDILFIAGGAFDGIERIISKRLNRQAVGYSTSKNVDNIDKDNLLQYIIPKDIKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+K   R ILT  ++ LI QY++L   + ++ + T++++D + D 
Sbjct: 294 PEIIGRLPVLTHMDPLDKETLRAILTQPKNALIKQYQKLFMMDDVVFNITDEALDFIVDK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L+++ E +L D  +      +K + ID EY  
Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSDDKILNIDKEYAH 395



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I + LD+Y+IGQ   K+ +++A+ N ++R     D  + E+   NI++VG TG GKT
Sbjct: 62  PKQIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQNDHDEVEIEKSNIIMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 122 LVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVAKAER 173


>gi|167646808|ref|YP_001684471.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter sp.
           K31]
 gi|189082487|sp|B0SZ62|CLPX_CAUSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167349238|gb|ABZ71973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           sp. K31]
          Length = 420

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQNHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P +                   L
Sbjct: 238 DTTNILFICGGAFAGLERIISARGQGKSIGFGAKVADPEERRTGEILRGVEPDDLQRFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L FTED++  +A 
Sbjct: 298 IPEFIGRLPVIATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHGVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+++ME +L +  F
Sbjct: 358 KAI-LRKT----GARGLRSIMEGILLETMF 382


>gi|330996066|ref|ZP_08319960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574063|gb|EGG55641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Paraprevotella xylaniphila YIT 11841]
          Length = 411

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILFI  GAF                         H+ +        P DL     +
Sbjct: 236 DTRNILFICGGAFDGIEKKIAQRMNTHVVGYNSVQNMQHIDKSNLMKYILPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ +++++ Q  +L + +GI L F ED+++ + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMDGIKLSFDEDTLEYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV  N     +GAR L+++ME ++ D  F     + KT  +  +Y +
Sbjct: 356 AVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTLDYAK 397



 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PR+I + LD+Y+IGQ DAKR +A+A+ N ++R  Q  +D   E+   NI++VG TG GKT
Sbjct: 64  PRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V+ ++R
Sbjct: 124 LLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAAQR 175


>gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
 gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
          Length = 420

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ+ AKR +++A+ N ++R    A   D EL   NILLVGPTG GK
Sbjct: 63  TPQEICNVLDDYVIGQKQAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 175



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 176 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 235

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    +V+ P +                   L
Sbjct: 236 DTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEEKRTGEYLRQTEPEDLLKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+ +    IL++ ++ L+ QY++L + E + LDFT+D++  +A 
Sbjct: 296 IPEFVGRLPVIATLEDLDIAALVKILSEPKNALVKQYQKLFEMENVELDFTDDALTTVAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 356 KAIERKT-----GARGLRSILEGILLDTMF 380


>gi|319407113|emb|CBI80750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. 1-1C]
          Length = 424

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 240 DTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++MER+L +  F
Sbjct: 360 KAIERKT-----GARGLRSIMERILLNTMF 384


>gi|313682640|ref|YP_004060378.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155500|gb|ADR34178.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum
           kujiense DSM 16994]
          Length = 403

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +IV  L++YIIGQ+DAK+ +A+AL N ++R + P     EL   NI+LVGPTG GKT
Sbjct: 58  TPEKIVEFLNKYIIGQEDAKKVLAVALYNHYKRIENPVYNNVELEKSNIMLVGPTGSGKT 117

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ L+++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 118 LLAKSLSKIMQVPFAVADATALTEAGYVGEDVESILSRLLAAA 160



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 53/216 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +   + +G  VS EGVQ+ LL ++EG+ V           +T+    
Sbjct: 170 GIIYIDEVDKIARKGESSTMGRDVSGEGVQQGLLKILEGAEVYVPIKGSRKNSTTETVLF 229

Query: 292 NTDHILFIASGAF-------HV----------SRPAD---------------LLPEIQGR 319
           NT H+LF+  GAF       H           S  AD               ++PE  GR
Sbjct: 230 NTSHVLFVCGGAFVGLVPDTHTKKTNKVGFSKSASADAKPKKIDAKALVHYGMIPEFIGR 289

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L K     IL + ++ LI Q++ L   +GI L+F + +++A+A  A++   
Sbjct: 290 IPVVAQLGELTKDQMIQILQEPDNALIKQFQALFDMDGIELNFEDKALEAVAQKAIDRG- 348

Query: 380 TVGDIGARRLQTVMERVLEDISFSA---SDLQEKTV 412
               +GAR L+ ++E  +  + FS     +LQ  TV
Sbjct: 349 ----VGARGLRGIIEEAMLPLQFSCPSKKNLQSVTV 380


>gi|160902924|ref|YP_001568505.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95]
 gi|160360568|gb|ABX32182.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Petrotoga
           mobilis SJ95]
          Length = 409

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I SELD+Y+IGQ+ AK+ +++A+ N ++R     ++ D EL   N+LL+GPTG GK
Sbjct: 60  TPRQIKSELDKYVIGQETAKKIISVAVYNHYKRIYSSKNINDVELDKSNVLLIGPTGTGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T I++ LAR+   PF   + T  TE GYVG +VE +I  L+      V+++ +
Sbjct: 120 TLIAQTLARILDVPFAIADATTLTEAGYVGEDVENVILRLLQACDYDVKKAEK 172



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G          I
Sbjct: 173 GIIYIDEIDKISRKSPNPSITRDVSGEGVQQALLKIVEGTLANVPPQGGRKHPYQEFIQI 232

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------L 312
           +T  ILFIA GAF               +   AD                         L
Sbjct: 233 DTSKILFIAGGAFDGLTDIIKHRVKDSSLGFGADIKSNNKQRDGEVLKNIVQDDLIKYGL 292

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GRFPV   L  L++ D   I  + ++ L  QY+++++ EGI L+ T +++  +  
Sbjct: 293 IPEFVGRFPVVATLNDLDEEDLIKIAMEPKNALFKQYQKMLEIEGIKLEITAEAMKEICS 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVIDAEYV 419
            A+   +     GAR L+T+ E ++ D+ + A +++ K   +VID E V
Sbjct: 353 QALKRGT-----GARALKTIFEEIMLDVMYEAPEIKNKINKIVIDEEVV 396


>gi|237745592|ref|ZP_04576072.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229376943|gb|EEO27034.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 423

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +      D  EL   NILLVGPTG G
Sbjct: 67  TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKYYGGKNDDVELAKSNILLVGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 180



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +I+FI  GAF                     V  P++                   L
Sbjct: 241 DTSNIMFICGGAFDGLSKIIANRSEKGGIGFSAAVKSPSEKAGSEMLLNVEPEDLIKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L ++    IL   ++ L+ QY +L++ EG  L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVAVLNDLTENALIEILVKPKNALVKQYTKLLEMEGAELEIRPDALHAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ME++L D+ +
Sbjct: 361 KALERKT-----GARGLRSIMEQLLLDVMY 385


>gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
 gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
          Length = 422

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 65  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 165



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 298 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVQLEFEEEALRSIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
             A+   +     GAR L++++ER L D  +   DL+  T VVID + +
Sbjct: 358 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVVIDKDVI 401


>gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
 gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
          Length = 422

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    AD  D EL   NILL+GPTG GK
Sbjct: 65  TPREICEVLDDYVIGQMHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNILLIGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDVEERGVGEVFKSLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L   E   L FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFDLEDTKLTFTDDAMKAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +     VV++ E V
Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVNEVVVNEEAV 399


>gi|16126204|ref|NP_420768.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus
           CB15]
 gi|221234976|ref|YP_002517412.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter
           crescentus NA1000]
 gi|239977101|sp|B8GX14|CLPX_CAUCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239977102|sp|P0CAU2|CLPX_CAUCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3688207|emb|CAA09092.1| clpX protein [Caulobacter crescentus CB15]
 gi|13423422|gb|AAK23936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           crescentus CB15]
 gi|220964148|gb|ACL95504.1| ATP-dependent endopeptidase clp, ATP-binding subunit ClpX
           [Caulobacter crescentus NA1000]
          Length = 420

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P +                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGAAKSIGFGAKVTDPEERRTGEILRNVEPDDLQRFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L FTED++  +A 
Sbjct: 298 IPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ME +L +  F
Sbjct: 358 KAIARKT-----GARGLRSIMEGILLETMF 382


>gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
 gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
          Length = 420

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTGVGK
Sbjct: 64  TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV +P DLL   
Sbjct: 237 DTTNILFICGGAFAGLEKIISSRGRGTSIGFGATVQAPDERRTGDIFRHV-QPEDLLKFG 295

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E   L F ++++ ++A
Sbjct: 296 LIPEFVGRLPVIATLEDLDEEALKRILTEPKNALVKQYQRLFEMESTELTFQDEALSSVA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+  ++     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 356 RKAIERHT-----GARGLRSIMEGILLDTMFELPGLEGVEQVVIGPEVV 399


>gi|295689636|ref|YP_003593329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
 gi|295431539|gb|ADG10711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
          Length = 420

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P +                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGAAKSIGFGAKVTDPEERRTGEILRNVEPDDLQRFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L FT+D++  +A 
Sbjct: 298 IPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTDDALHQVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ME +L +  F
Sbjct: 358 KAIARKT-----GARGLRSIMEGILLETMF 382


>gi|319405543|emb|CBI79162.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. AR 15-3]
          Length = 424

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++MER+L D  F
Sbjct: 360 KAIERKT-----GARGLRSIMERILLDTMF 384


>gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9]
 gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9]
          Length = 422

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           SPREI   LD+Y+IGQ+ AK+A+++A+ N ++R    +D ++E  L   NILL+GPTG G
Sbjct: 67  SPREIREALDQYVIGQEQAKKALSVAVYNHYKRLNAKSDDKNEVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+
Sbjct: 127 KTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVESIITKLL 168



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+           + + ++  +
Sbjct: 181 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKNPNAEFIQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                     + P DL+   
Sbjct: 241 DTTNILFICGGAFDGLEKIIRQRTEKGGIGFGAEVASKNDQKAVGELLRDTEPEDLIKFG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++     ILT+ ++ L  QY++L + EG+ LD    ++ A+A
Sbjct: 301 LIPEFIGRLPVVALLEPLDEEALMTILTEPKNALAKQYRKLFEMEGVELDLKPSALLAIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++ER L D  +    L+   TVV+D + +
Sbjct: 361 KQALARRT-----GARGLRSIVERALLDTMYELPSLENVATVVVDEKVI 404


>gi|302345890|ref|YP_003814243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica ATCC 25845]
 gi|302150179|gb|ADK96441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +A+A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 64  PKEIKQYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      +V++           P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHTVGYNSVQNVAKIDKNDLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L FTE ++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIELTFTEAALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            V        +GAR L++++E V+ D  F     + K+  +  EYVR  +
Sbjct: 356 GVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400


>gi|269213481|ref|ZP_06157997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
 gi|269146222|gb|EEZ72640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
          Length = 394

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 46  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGCNVELSKSNILLIGPTGSGK 105

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 146



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 159 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 218

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 219 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 278

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 279 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 338

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             A+   +     GAR L++++ER L D  +   DL+    V+  E V
Sbjct: 339 SQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGEAV 381


>gi|312131372|ref|YP_003998712.1| ATP-dependent clp protease ATP-binding subunit clpx [Leadbetterella
           byssophila DSM 17132]
 gi|311907918|gb|ADQ18359.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leadbetterella
           byssophila DSM 17132]
          Length = 421

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V             +   +
Sbjct: 182 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVGVPPQGGRKHPDQQLVQV 241

Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312
           NT++ILFI  GAF     H+++  +                                  L
Sbjct: 242 NTENILFICGGAFDGIARHIAKRINTSPIGFRQEGKGVNLQSDESLMRYVTQQDLKSFGL 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+  +L  L++S  + ILT+ ++ L+ QYK+L + E I L+F E ++D + D
Sbjct: 302 IPELIGRLPLLTYLNPLDRSTLKRILTEPQNALVKQYKKLFQMENISLEFEEAALDYIVD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            AV  N     +GAR L+++ E +L D  F   SD   K  ++  +Y +
Sbjct: 362 QAVKFN-----LGARGLRSICESILTDAMFELPSDKSIKEFLVTLDYAK 405



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67
           P+E+   LDR+IIGQ +AK+ + +A+ N ++R   P+   D  + K NI++VG TG GKT
Sbjct: 70  PQELKKYLDRFIIGQDEAKKVLTVAVYNHYKRLMQPSTGDDVNIEKSNIIMVGETGTGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A++   PF   + T  TE GYVG ++E I+  L+  A   V +++R
Sbjct: 130 YLARTIAKMLEVPFAIADATVLTEAGYVGEDIESILTRLLQAADYNVEQAQR 181


>gi|255066288|ref|ZP_05318143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
 gi|255049498|gb|EET44962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
          Length = 422

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 65  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 165



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 58/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 298 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELEFEEEALRSIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  T V+
Sbjct: 358 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVV 395


>gi|74317694|ref|YP_315434.1| ATP-dependent protease ATP-binding subunit ClpX [Thiobacillus
           denitrificans ATCC 25259]
 gi|123772958|sp|Q3SI99|CLPX_THIDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|74057189|gb|AAZ97629.1| ClpX, ATPase regulatory subunit [Thiobacillus denitrificans ATCC
           25259]
          Length = 423

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AK+A+A+A+ N ++R +  +   D EL   NILL+GPTG GK
Sbjct: 65  TPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 165



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H   P DL+   
Sbjct: 238 DTSNILFICGGAFSGLEKVIRGRTEKGGIGFGAQVKNVDENKRDAELLHQVEPEDLIKYG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+++    ILT+ ++ L  Q+ +L K EG+ L+F +D+++A+A
Sbjct: 298 LIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+ L  T    GAR L++++E  L D  +    L+    VV+D
Sbjct: 358 KRAL-LRRT----GARGLRSIIEHALLDTMYDLPSLKGVSKVVVD 397


>gi|119503320|ref|ZP_01625404.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119460966|gb|EAW42057.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 426

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQQ AKR +A+A+ N ++R +   D R     EL   NILLVGPTG 
Sbjct: 66  PFEINAILDQYVIGQQRAKRVLAVAVYNHYKRLRYTPDTRSGDDVELSKSNILLVGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAETLARLLDVPFTVADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH---------------------------------VS--RPADL---- 312
           +T +ILFI  GAF                                  +S   P DL    
Sbjct: 241 DTSNILFICGGAFAGLDKIIRNRSEKGGIGFTAEVKSKDETRRFGEMISDLEPEDLVQYG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+      ILT+  + L  QY ++   EG+ +DF ED + A+A
Sbjct: 301 LIPEFVGRLPVIATLEELDIEALVRILTEPRNALTKQYAKMFDMEGVEIDFREDGLRAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   +     GAR L++++E VL +  ++    Q    +V+D   ++
Sbjct: 361 ERAMERKT-----GARGLRSILENVLLESMYNVPSQQNVAKIVVDESVIQ 405


>gi|146277489|ref|YP_001167648.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166215195|sp|A4WSH9|CLPX_RHOS5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145555730|gb|ABP70343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 421

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKNDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFHV------------------------SR----------PADLL---- 313
           +T +ILFI  GAF                          SR          P DLL    
Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDSRGVGELFTELEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L D  F    L
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 3/109 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +  A  D RD EL   NILL+GPTG
Sbjct: 63  LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A N
Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADN 171



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+  S            +Y  +
Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKL 238

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313
           +T +I+FI  GAF     V R                                DLL    
Sbjct: 239 DTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGETLVQIASEDLLSFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   +  L + D   IL + ++ L  QY++L   + I L FTE ++ A+A 
Sbjct: 299 IPELVGRLPVLSTMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTEGALSAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++VMER + ++ +
Sbjct: 359 EAIKRKA-----GARGLRSVMERAMLEVMY 383


>gi|77463764|ref|YP_353268.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides 2.4.1]
 gi|123591634|sp|Q3J1G7|CLPX_RHOS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77388182|gb|ABA79367.1| ATP-dependent protease Clp, ATPase subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 421

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERVQR 176



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF--------------------HVSRP-------------------ADL 312
           +T +ILFI  GAF                     V  P                     L
Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDARGVGELFKELEPEDLPKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L D  F    L
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|325142574|gb|EGC64970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis 961-5945]
          Length = 341

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 53/162 (32%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPAD----- 311
           +T +ILFI  GAF                                    +  P D     
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L 
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALF 340


>gi|319892720|ref|YP_004149595.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162416|gb|ADV05959.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464246|gb|ADX76399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus pseudintermedius ED99]
          Length = 420

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R QQL P D   EL   N+ L+GPTG G
Sbjct: 63  TPKEIMDQLNSYVIGQEKAKKSLAVAVYNHYKRVQQLGPKDDDVELQKSNVALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 167



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGINEVIKRRLGEKVIGFASNEASNFDEASLLEQIRPEDLQTYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + L+FT++++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDDVALEFTDEALAAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|270156950|ref|ZP_06185607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|289164626|ref|YP_003454764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
 gi|269988975|gb|EEZ95229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|288857799|emb|CBJ11643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
          Length = 424

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 66/100 (66%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+EI   LD Y+IGQ  AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  SPQEISGFLDEYVIGQAHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 59/220 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         
Sbjct: 175 QHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFL 234

Query: 290 SINTDHILFIASGAF------------------------------HVSRPAD-------- 311
            ++T +ILFI  GAF                               +S+  +        
Sbjct: 235 QVDTSNILFICGGAFAGLEKVIRERSDKSGIGFSAQLKNKKDTNDEISKVLNQLESDDLI 294

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L+ L++S    ILT+ ++ L  Q++ L K E + L+F ++++ 
Sbjct: 295 KYGLIPEFVGRLPVVTTLQELDQSALIDILTNPKNALTKQFQSLFKMEDVELEFRDEALV 354

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A+A  A+        +GAR L+ ++E +L D  +    L+
Sbjct: 355 AIAKKALERK-----MGARGLRAILENILLDTMYELPSLE 389


>gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
 gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
          Length = 422

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTGVGK
Sbjct: 65  TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFGATVQAPDDRRTGDIFRQVQPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E + L F +D++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALKKILTEPKNALVKQYQRLFEMENVELTFQDDALSAVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+  ++     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 358 KAIERHT-----GARGLRSIMEGILLDTMFDLPGLEGVEQVVIGPEVV 400


>gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. SR1/5]
          Length = 437

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI S LD Y+IGQ DAK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHSILDEYVIGQDDAKKALSVAVYNHYKRILASRNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 177 QYGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236

Query: 290 SINTDHILFIASGAF--------------------HVSRPAD------------------ 311
            I+T +ILFI  GAF                     VS   D                  
Sbjct: 237 QIDTTNILFICGGAFDGLEKIIEARQDTKSIGFGAEVSEKEDRNVGEVLKEVMPEDFIKF 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV V L SL++     IL + +++L  QY +L + +G+ L+F +++++ +
Sbjct: 297 GLIPEFIGRVPVVVTLDSLDEEALIRILKEPKNSLTKQYDKLFELDGVQLEFQDEALETV 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419
           A  ++   +     GAR L+ +ME  L D+ + + SD   +  ++  E V
Sbjct: 357 ARKSLERKT-----GARGLRAIMEHTLMDLMYKTPSDDTIRKCIVTKEAV 401


>gi|94266600|ref|ZP_01290282.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93452771|gb|EAT03309.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 3/109 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +  A  D RD EL   NILL+GPTG
Sbjct: 63  LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A N
Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADN 171



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+  S            +Y  +
Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKL 238

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313
           +T +I+FI  GAF     V R                                DLL    
Sbjct: 239 DTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGEILVQIASEDLLSFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   +  L + D   IL + ++ L  QY++L   + I L FTE ++ A+A 
Sbjct: 299 IPELVGRLPVLATMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTEGALSAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++VMER + ++ +
Sbjct: 359 EAIKRKA-----GARGLRSVMERAMLEVMY 383


>gi|270339923|ref|ZP_06006468.2| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           bergensis DSM 17361]
 gi|270333281|gb|EFA44067.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           bergensis DSM 17361]
          Length = 418

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD YIIGQ +AKR +A+++ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 71  PKEIKAYLDEYIIGQDEAKRYMAVSVYNHYKRLQQPTDEDGVEIEKSNIIMVGSTGTGKT 130

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 131 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 173



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 183 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQDYIHV 242

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 243 NTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNMRSIDKGDLMKYILPQDLKSFGLI 302

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L  L++   R IL + ++++  Q+ +L   + I L F +D++D + D 
Sbjct: 303 PELIGRVPVLTFLNPLDRKALRRILVEPKNSITKQFVKLFAMDNITLTFADDALDFIVDK 362

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  + A   + +   +  +Y +  +
Sbjct: 363 AVEYK-----LGARGLRSIVEAVIMDAMYDAPSRRIRKFEVTLDYAKAQL 407


>gi|282878162|ref|ZP_06286959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
 gi|281299740|gb|EFA92112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
          Length = 415

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67
           P+EI + LD YIIGQ DAKR +++A+ N ++R Q P  D   E+   NI++VG TG GKT
Sbjct: 68  PQEIKAYLDEYIIGQDDAKRYLSVAVYNHYKRLQQPKNDDGVEIEKSNIIMVGSTGTGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 128 LLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 170



 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYTHV 239

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 240 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRNINKGDLMQYILPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L F ED++D + D 
Sbjct: 300 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFEMDGIKLTFNEDALDYIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ D  F       K+  +  +Y +
Sbjct: 360 AVEYK-----LGARGLRSIVESVMMDAMFEIPSKHVKSFKVTLKYTQ 401


>gi|285017389|ref|YP_003375100.1| ATP-dependent clp protease ATP-binding subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472607|emb|CBA15112.1| probable atp-dependent clp protease atp-binding subunit protein
           [Xanthomonas albilineans]
          Length = 428

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQQ AKR +A+A+ N ++R +    +   EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 59/234 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238

Query: 290 SINTDHILFIASGAF------------------------HVSR------------PADLL 313
            ++T +ILFI  GAF                         V R            P DL+
Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSVERKREVGKILAEVEPEDLI 298

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L + EG+ L+F +D++ 
Sbjct: 299 KFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMEGVELEFRQDALL 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A+A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 359 AIAKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|258516486|ref|YP_003192708.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780191|gb|ACV64085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 416

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 61  PKEIKEILDQYVIGQESAKKALAVAVYNHYKRINLGGKIDDVELQKSNIVMLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232

Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313
           +T ++LFI  GAF                         R            P DLL    
Sbjct: 233 DTTNVLFICGGAFDGIDKIIQNRTGKKSMGFGAEIKAMREQRIGEILSNILPEDLLKYGL 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT+  + LI QY++L + +G+ ++F  D++  +A 
Sbjct: 293 IPEFVGRLPVIVTLDMLDEDALVRILTEPRNALIKQYEKLFELDGVAIEFQADALKCIAK 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E V+ +I +
Sbjct: 353 EALRRNT-----GARGLRAILEDVMLNIMY 377


>gi|297621813|ref|YP_003709950.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia
           chondrophila WSU 86-1044]
 gi|297377114|gb|ADI38944.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia
           chondrophila WSU 86-1044]
          Length = 415

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
             P+EI  +LD YIIGQ+ AKRA+++A+ N ++R Q L  +   E    N+LL GPTG G
Sbjct: 60  LKPKEIKEKLDEYIIGQEKAKRAISVAVYNHYKRVQSLGKESDIEFNKSNVLLFGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA +   PF   + T  TE GYVG +VE II  LV  A
Sbjct: 120 KTLIAKTLAHILDVPFTIADATTLTEAGYVGEDVENIILRLVQAA 164



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI    S   I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKINRTTSNVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233

Query: 292 NTDHILFIASGAF----------------------------HVS-------RPADLL--- 313
           NT++ILFI  GAF                            H          P DL+   
Sbjct: 234 NTENILFIIGGAFVNLDQIVAKRLGRSTIGFSSQEGKSIDPHQKSQLLSQVEPEDLIQSG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GRF    +   L   D  LILT+ ++ +I QY  + + E + L FT++++  +A
Sbjct: 294 MIPEFVGRFHTIANCNELTVDDLVLILTEPKNAVIKQYISMFEMEDVKLSFTDEALQEVA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
             A+   +     GAR L+ ++E  + D+ F   SD   + ++ID E +
Sbjct: 354 KKAIEAGT-----GARALRMILENAMRDLMFEVPSDKTIQEIIIDKETI 397


>gi|325130451|gb|EGC53212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis OX99.30304]
          Length = 414

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|298369174|ref|ZP_06980492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283177|gb|EFI24664.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 424

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 64  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 124 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 164



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 58/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 237 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 297 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELEFEEEALRSIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             A+   +     GAR L++++ER L D  +   DL+
Sbjct: 357 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLK 388


>gi|308389490|gb|ADO31810.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis alpha710]
          Length = 414

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALSSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|327542676|gb|EGF29147.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula
           baltica WH47]
          Length = 427

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 11/213 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           SPR IV  LD Y+IGQ  AKR +A+A+ N ++R    AD  +   E+   NILL GPTG 
Sbjct: 75  SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 134

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V  ++R     
Sbjct: 135 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 194

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178
           DEV +  S N    I   + G+    +  ++    + +          E      D SN 
Sbjct: 195 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 254

Query: 179 FDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209
             I GG  VGI  +    L  + +G G    +R
Sbjct: 255 LFICGGTFVGIEEIIRRRLGHRTLGFGEGANVR 287



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 60/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI + +    I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 190 GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQL 249

Query: 292 NTDHILFIASGAF-------------------------HVSRPADL-------------- 312
           +T +ILFI  G F                         +   P +L              
Sbjct: 250 DTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTPGELVAQVQTEDILKFGL 309

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  +L+ L+      +LT+ +++L+ QY+ L   E   L+FTE+++ A+A 
Sbjct: 310 IPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVKQYQALFAMENCELEFTEEALHAIAK 369

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            AV+       +GAR L+ +ME V+ DI +   DL E+
Sbjct: 370 KAVDKG-----VGARGLRGIMEDVMLDIMY---DLPEQ 399


>gi|261392354|emb|CAX49892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis 8013]
          Length = 414

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRRRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
 gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
          Length = 421

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           SPREI   LD Y+IGQ  AKR +++A+ N ++R    Q  +D+  EL   NILL+GPTG 
Sbjct: 65  SPREICDVLDDYVIGQMMAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T +ILFI  GAF  + R                                 P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVREPDERGTGEVFKDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTELSFTDDALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    + + T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEGILLDTMFELPGMDDVTEVVVNEEAV 400


>gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
 gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
          Length = 425

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLP-ADLRD--ELMPKNILLVGPTGV 64
           PREI   LD+Y+IGQ+ AK+ +++A+ N ++R + +P +D  D  EL   NILLVGPTG 
Sbjct: 66  PREICQILDQYVIGQESAKKILSVAVYNHYKRLRNIPRSDETDDIELSKSNILLVGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PFI  + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAQTLARLLDVPFIMADATALTEAGYVGEDVENIIQKLL 168



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+             + ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAMVPPQGGRKHPNQEFIQV 240

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADL----- 312
           +T +ILFI  GAF                        H  +          P DL     
Sbjct: 241 DTTNILFICGGAFDGLDRVIRARTEKGGIGFGVEVKSHSGKDVNKVLQQVEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII-LDFTEDSIDALA 371
           +PE  GR PV   L+ LN++    ILT+ ++ L+ QY ++   EG + L+F E ++ A+A
Sbjct: 301 IPEFVGRLPVVATLEELNEAALIQILTEPKNALVKQYWKMFNMEGGVDLEFREPALKAIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
             A+   +     GAR L++++E +L DI +    L+  T VVID
Sbjct: 361 KKALTRKT-----GARGLRSILEEILLDIMYDLPSLENVTKVVID 400


>gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
 gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
          Length = 421

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    Q  +D+  EL   NILL+GPTG 
Sbjct: 65  TPREICEVLDDYVIGQMKAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDDRGVGEIFRDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVVATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTDLTFTDDALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 358 KAIQRKT-----GARGLRSILEGILLDTMF 382


>gi|304387303|ref|ZP_07369496.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338686|gb|EFM04803.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|163784517|ref|ZP_02179381.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880218|gb|EDP73858.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 104

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 72/104 (69%)

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT  ++ LI QYK LM+TEG+ L+FT+D+++ +A +A  +N    +IGARRL T++
Sbjct: 1   FIKILTQPKNALIKQYKALMETEGVHLEFTDDAVEEIARIAEEVNEKTENIGARRLHTIL 60

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ER++ED SF A DL+ +T++ID + V+  +GD     D+  +IL
Sbjct: 61  ERIMEDYSFEAPDLKGQTIIIDKKVVQAKLGDIVQNEDLTKYIL 104


>gi|319410635|emb|CBY91004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis WUE 2594]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|157363410|ref|YP_001470177.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           lettingae TMO]
 gi|157314014|gb|ABV33113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           lettingae TMO]
          Length = 404

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI +ELD+Y+IGQ+ AKR +++A+ N ++R    +D  D E+   NI+L+GPTG GKT
Sbjct: 56  PAEIKAELDKYVIGQEKAKRVISVAVYNHYKRVFYESDNDDVEIEKSNIMLIGPTGSGKT 115

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            I+R LA++   PF   + T  TE GYVG +VE +I  L++VA
Sbjct: 116 LIARVLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEVA 158



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 103/226 (45%), Gaps = 61/226 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++ 
Sbjct: 166 QYGIVYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPYQEFI 225

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFI  GAF                                   HV  P DL  
Sbjct: 226 KVDTSNILFIVGGAFDGLEEIVKRRIQDSSMGFGADIKSKKRMRLGEILSHVV-PDDLVQ 284

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L  L + D   IL + ++ ++ QYK+L + + I L+ T+D++ A
Sbjct: 285 YGMIPEFVGRFPVIATLDDLTEEDLVRILNEPKNAIVKQYKKLFQLDNIELEITKDALYA 344

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           +A  A+   +     GAR L+ V E V+ D+ F     +  EK VV
Sbjct: 345 IARKALTKGT-----GARALKGVFEEVMIDVMFEIPSTKNVEKVVV 385


>gi|121611286|ref|YP_999093.1| ATP-dependent protease ATP-binding subunit ClpX [Verminephrobacter
           eiseniae EF01-2]
 gi|121555926|gb|ABM60075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verminephrobacter eiseniae EF01-2]
          Length = 447

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ++AKR +A+A+ N ++R +     R    EL   NILL+GPTG 
Sbjct: 93  TPAEIKNNLDNYVIGQEEAKRTLAVAVYNHYKRLRYKEKARKNDVELSKSNILLIGPTGS 152

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R
Sbjct: 153 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCGYKVEPAQR 207



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ VS             +  I
Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMVSVPPQGGRKHPNQDFLQI 267

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T  ILFI  GAF                                      P DL+    
Sbjct: 268 DTSDILFICGGAFAGLEKVIENRTEASGIGFGASVKSKKQRSLTDVFAEVEPEDLIKFGL 327

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+  + LI QY +L+  EG+ L+    ++ ++A 
Sbjct: 328 IPELVGRMPVVTALAELSEQALIQILTEPRNALIKQYGKLLAMEGVNLEIRPAAMQSIAR 387

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E+ L    F   +    + VVID
Sbjct: 388 KALARKT-----GARGLRSILEQSLIGTMFDLPNTSNVERVVID 426


>gi|15677237|ref|NP_274390.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           MC58]
 gi|21263485|sp|Q9JYY3|CLPX_NEIMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7226618|gb|AAF41746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis MC58]
 gi|316984186|gb|EFV63164.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325134392|gb|EGC57037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M13399]
 gi|325140408|gb|EGC62929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis CU385]
 gi|325200007|gb|ADY95462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325201919|gb|ADY97373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240149]
 gi|325205861|gb|ADZ01314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M04-240196]
 gi|325208330|gb|ADZ03782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis NZ-05/33]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|309378864|emb|CBX22569.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|326561828|gb|EGE12163.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 7169]
 gi|326563374|gb|EGE13639.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 12P80B1]
 gi|326571925|gb|EGE21930.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC8]
          Length = 438

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|296112318|ref|YP_003626256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
 gi|295920012|gb|ADG60363.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
          Length = 438

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|255284022|ref|ZP_05348577.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
 gi|255265475|gb|EET58680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
          Length = 432

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+A+A+A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 65  LKPEEIKAVLDDYVIGQDNAKKALAVAVYNHYKRILAGKDLGVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TYLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 57/213 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 176 QHGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELI 235

Query: 290 SINTDHILFIASGAF----------------------------HVSR------PAD---- 311
            I+T  ILFI  GAF                            +V        P D    
Sbjct: 236 QIDTTDILFICGGAFEGIDKIIETRMNTKTIGFGRTLSDKAQKNVGEVLKEVVPQDFVKY 295

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR PV V L +L++     IL + ++++I QYK+L + +G+ LDF +D++DA+
Sbjct: 296 GMIPEFIGRVPVVVSLDALDEEALVRILKEPKNSIIKQYKKLFELDGVKLDFEDDAVDAI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           A +++   +     GAR L+ VMER ++++ ++
Sbjct: 356 AKLSMERKT-----GARGLRAVMERSMQELMYT 383


>gi|71900577|ref|ZP_00682704.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1]
 gi|71729634|gb|EAO31738.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1]
          Length = 426

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GKT
Sbjct: 69  PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238

Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313
            ++T +ILFI  GAF                               V +      P DL+
Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D++ 
Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A  A+   +     GAR L+T++E VL D  +
Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387


>gi|325136470|gb|EGC59076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M0579]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADVTKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|325109337|ref|YP_004270405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
 gi|324969605|gb|ADY60383.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
          Length = 426

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +PREIV+ LD Y+IGQ+ AKR +++A+ N ++R   L AD  D E+   NILL+GPTG G
Sbjct: 75  TPREIVAHLDEYVIGQERAKRVMSVAVHNHYKRLMNLEADESDVEIEKSNILLLGPTGSG 134

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ +ARL   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 135 KTLLAKTMARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 64/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+F+DE DKI        I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 189 GIIFIDEIDKIGKTSQNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQI 248

Query: 292 NTDHILFIASGAFH-------------------VSRPA--------------------DL 312
           +T +ILFI  G F                    VS+                       L
Sbjct: 249 DTTNILFICGGTFVGLEDIVSKRLGKKSIGFNVVSQEKRDRQRSELLAQAEVDDVLEFGL 308

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+   L  L + D   IL + +++++ Q+++L + E   L+FT +++  +A 
Sbjct: 309 IPELLGRLPLLSTLSPLAEEDLVRILVEPKNSIVRQFQKLFEMEDASLEFTPEALLEVAR 368

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV----VIDAEYVR 420
            A     +  D GAR L+  +E V+ D+ +   DL +K V    V+ AE VR
Sbjct: 369 AA-----SKRDTGARSLRAALETVIFDVLY---DLPDKGVGKKFVVTAEMVR 412


>gi|326568951|gb|EGE19020.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC1]
          Length = 438

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|71907347|ref|YP_284934.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|123774411|sp|Q47FB7|CLPX_DECAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71846968|gb|AAZ46464.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB]
          Length = 420

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI S LD+Y+IGQ+ AKR +++A+ N ++R +  A      EL   NILL+GPTG G
Sbjct: 63  TPREISSILDQYVIGQEVAKRILSVAVYNHYKRLRHTAKNAGDVELSKSNILLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 123 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 164



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 62/237 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S             +  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTASIPPQGGRKHPNQDFVQV 236

Query: 292 NTDHILFIASGAFHV-----------------------------------SRPADLL--- 313
           +T +ILFI  GAF                                     + P DL+   
Sbjct: 237 DTTNILFICGGAFAGLEKVIQSRSERGGIGFGAEVKSKDDGKAVGKILLDAEPEDLIKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L +S    ILT+ ++ L+ QY++L   E + L+    ++ A+A
Sbjct: 297 LIPELIGRLPVVATLQELEESALVQILTEPKNALVKQYQKLFSMEDVELEIRPTALSAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
             A+   +     GAR L++++E  L D  +    ++  + VVID   +    GD P
Sbjct: 357 KKALARKT-----GARGLRSILEHALLDTMYELPGMESVEKVVIDENTI---TGDTP 405


>gi|28198387|ref|NP_778701.1| ATP-dependent protease ATP-binding subunit [Xylella fastidiosa
           Temecula1]
 gi|182681029|ref|YP_001829189.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           M23]
 gi|32129455|sp|Q87E50|CLPX_XYLFT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691092|sp|B2I8K4|CLPX_XYLF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28056457|gb|AAO28350.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Temecula1]
 gi|182631139|gb|ACB91915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylella
           fastidiosa M23]
 gi|307579497|gb|ADN63466.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 426

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GKT
Sbjct: 69  PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238

Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313
            ++T +ILFI  GAF                               V +      P DL+
Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D++ 
Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A  A+   +     GAR L+T++E VL D  +
Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387


>gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC7]
          Length = 438

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|161870243|ref|YP_001599413.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis 053442]
 gi|189044141|sp|A9M020|CLPX_NEIM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161595796|gb|ABX73456.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis 053442]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|319404100|emb|CBI77690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 398

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 41  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 154 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 213

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 214 DTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 273

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 274 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 333

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++MER+L +  F    L
Sbjct: 334 KAIERKT-----GARGLRSIMERILLNTMFELPAL 363


>gi|319898777|ref|YP_004158870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
 gi|319402741|emb|CBI76288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
          Length = 398

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 41  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 154 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 213

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P +                   L
Sbjct: 214 DTTNILFICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 273

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 274 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVHLVFHEDALRVIAK 333

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++MER+L D  F    L
Sbjct: 334 KAIERKT-----GARGLRSIMERILLDTMFELPAL 363


>gi|290969193|ref|ZP_06560718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780699|gb|EFD93302.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 410

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R Q   D  D EL   N+++VGPTG GK
Sbjct: 61  TPHEIKATLDEYVIGQEAAKKTLAVAVYNHYKRLQSNTDADDVELQKSNVVMVGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF   + T  TE GYVG +VE  +  L+  A   + +++R
Sbjct: 121 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENCLLKLIQAADYDIEKAQR 173



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 64/238 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+   V  + G          I
Sbjct: 174 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVAGVPPQGGRKHPHQDMLQI 233

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          +S                          P DL     
Sbjct: 234 DTTNILFICGGAFDGIDKTIQKRISDKKMGFGADVQSKSKKALKTLLKDIIPVDLQKFGL 293

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV V L  L++     ILT+ ++ L+ QY++++K + + L FT D++  +A 
Sbjct: 294 IPELIGRLPVLVTLDPLDEEAMVHILTEPKNALVKQYQKMLKMDDVELKFTSDALQEIAK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHI 423
            A+  N+     GAR L++++ER++ D+ F   S  D+++    K+ V + +  RL +
Sbjct: 354 EALRRNT-----GARGLRSIIERIMLDVMFDVPSRKDVEKCIVNKSCVTEGKKPRLEL 406


>gi|325128438|gb|EGC51319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis N1568]
          Length = 414

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 WQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|254805167|ref|YP_003083388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
 gi|254668709|emb|CBA06486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
          Length = 414

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRRRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|84686589|ref|ZP_01014482.1| ATP-dependent protease ATP-binding subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665502|gb|EAQ11979.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 423

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R    A   DE  L   NILL+GPTG G
Sbjct: 66  TPQEICGVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKHGDEIELAKSNILLIGPTGCG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 126 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 179



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 240 DTTNILFICGGAFAGLDRIIAQRGKGSAIGFGADVKDEQARKIGEVFQELEPEDLLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A++ 
Sbjct: 300 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDAKLTFTDDALLAISK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+++ME +L D  F    L+
Sbjct: 360 KAIQRKT-----GARGLRSIMEDILLDTMFDLPALE 390


>gi|254670021|emb|CBA04788.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha153]
          Length = 376

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 53/149 (35%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPAD----- 311
           +T +ILFI  GAF                                    +  P D     
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           L+PE+ GR PV   L+ L++     ILT+
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTE 327


>gi|71276512|ref|ZP_00652787.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon]
 gi|170729733|ref|YP_001775166.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           M12]
 gi|238687959|sp|B0U5N2|CLPX_XYLFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71162689|gb|EAO12416.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon]
 gi|167964526|gb|ACA11536.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa M12]
          Length = 426

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GKT
Sbjct: 69  PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238

Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313
            ++T +ILFI  GAF                               V +      P DL+
Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D++ 
Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A  A+   +     GAR L+T++E VL D  +
Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387


>gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 422

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ  AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 66  TPQEICTVLDDYVIGQDYAKRVLSVAVHNHYKRINHSAKNNDVELAKSNILLIGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVDRAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 239 DTTNILFICGGAFSGLEKIIAQRGKSSSIGFGAKVTSEDDRRTGEILRGVEPEDLLRFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL++ ++ L+ QY+ L   EG+ L  + +++ ++A 
Sbjct: 299 IPEFIGRLPVLATLEDLDEVALVKILSEPKNALVKQYQRLFDMEGVQLTLSNEALKSVAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VVI  E +
Sbjct: 359 KAIERKT-----GARGLRSIMEAILLDSMFELPSLKGVEEVVISPEVI 401


>gi|327312567|ref|YP_004328004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola F0289]
 gi|326945451|gb|AEA21336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola F0289]
          Length = 412

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      +V+R           P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L   +GI L FT+ ++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFSMDGITLSFTDPALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  F     + K+  +  EYVR  +
Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 64  PKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166


>gi|254672175|emb|CBA05020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha275]
          Length = 414

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|291298894|ref|YP_003510172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568114|gb|ADD41079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stackebrandtia nassauensis DSM 44728]
          Length = 567

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60
           P+EI   LD Y++GQ+DAKRA+A+A+ N ++R Q+        PA    EL   NIL++G
Sbjct: 64  PKEICEFLDEYVVGQEDAKRALAVAVYNHYKRVQVEAVAGKPRPASEPVELSKSNILMIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 PTGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIVAA 173



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 59/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK   +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKAGRKSESRSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQI 242

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  G+F      V R                             P DLL    
Sbjct: 243 DTTNILFICGGSFSGLEEIVERRKGANGVGFTAKLRIRGEENPEDNLADAMPEDLLEFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   ++ L++     ILT+  + LI QY+ L++ +G+ L F +D+++ + D
Sbjct: 303 IPEFIGRVPIMTAVRQLDREALIKILTEPRNALIKQYQRLLELDGVELVFEDDALEPIVD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVRLHI 423
           +A+ L  T    GAR L+ +ME VL+ + +      +K   VVI  + VR ++
Sbjct: 363 LAL-LRGT----GARGLRAIMEEVLQPVMYEIPSHADKVARVVITGDVVRKNV 410


>gi|319789634|ref|YP_004151267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio
           ammonificans HB-1]
 gi|317114136|gb|ADU96626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio
           ammonificans HB-1]
          Length = 410

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQQYIQI 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T +ILFI  GAF                                     P DL     +
Sbjct: 236 DTSNILFICGGAFVGLEDIIARRIGKGAMGFTADVDKKKMERDELLKYVEPDDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   LK L + D   +LT+ ++ L+ QYK+L++ EG+ L FTE+++  +A  
Sbjct: 296 PELIGRLPVIATLKELKEEDLVRVLTEPKNALVKQYKKLLEMEGVELVFTEEALREIARE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A+   +     GAR L+ +ME+++ D+ F     ++ K V+IDAE V+
Sbjct: 356 AIRRKT-----GARGLRAIMEKLMTDVMFEVPTRKDIKKVIIDAEAVK 398



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ++AK+ +++A+ N ++R      + D EL   NILL+GPTG GK
Sbjct: 63  TPKEIKEFLDQYVIGQEEAKKVLSVAVYNHYKRIMSGGSVDDVELEKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 166


>gi|325198516|gb|ADY93972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis G2136]
          Length = 414

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|171778305|ref|ZP_02919511.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283005|gb|EDT48429.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 409

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R    A+ RDE    L   NILL+GPTG 
Sbjct: 64  PKELLATLDEYVVGQERAKRALAVAVYNHYKRVSF-AESRDEEDVELQKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           NT +ILFI  GAF                     +R  D                  L+P
Sbjct: 238 NTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDEDASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F ED++ A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLTTDDLVRILTEPRNALVKQYQTLLSYDGVELEFDEDALQAVANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     +E T V
Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSREEVTKV 391


>gi|121635078|ref|YP_975323.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           FAM18]
 gi|166214793|sp|A1KUJ4|CLPX_NEIMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120866784|emb|CAM10537.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis FAM18]
 gi|325132435|gb|EGC55128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M6190]
 gi|325138423|gb|EGC60991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis ES14902]
 gi|325143447|gb|EGC65773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240013]
          Length = 414

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397


>gi|24215258|ref|NP_712739.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45657294|ref|YP_001380.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|46576590|sp|Q8F353|CLPX_LEPIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59797806|sp|Q72SG5|CLPX_LEPIC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24196348|gb|AAN49757.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45600532|gb|AAS70017.1| ATP-dependent protease [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 420

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP +I S LD+Y+IGQ  AK+A+++A+ N ++R  L     D E+   NILL+GPTG GK
Sbjct: 68  SPADIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N ++++
Sbjct: 128 TLLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDIKKA 178



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 181 GIIYIDEVDKIARKSDSASITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEYLQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DL+    
Sbjct: 241 DTKNILFILGGAFVDLPNIIKSRTGIKTIGFGSEEQRIQSENKDVLMEQVIPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ LN    R I  + +++++ QY  L++ E + L F +++ID +A+
Sbjct: 301 IPEFIGRLPIVATLQELNVDMLRQIFREPKNSVLKQYTRLLELENVKLTFHDEAIDKIAE 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           +A+   S     GAR L+ ++E ++ D+ F   S  D++E  V+I AE +
Sbjct: 361 LAIKRES-----GARGLRAIVENIMLDLMFDIPSRKDIEE--VIITAEVI 403


>gi|319787635|ref|YP_004147110.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466147|gb|ADV27879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 429

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 5/102 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           PREI+  LD+Y+IGQQ AK+ +A+A+ N ++R   +Q   D+  EL   NILLVGPTG G
Sbjct: 69  PREILEVLDQYVIGQQRAKKTLAVAVYNHYKRIESRQRNEDV--ELAKSNILLVGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311
           +T +ILFI  GAF         R +D                                  
Sbjct: 241 DTKNILFIVGGAFAGLDKIIQQRSSDAGGIGFGAKVKSSKVKADTGKLLAEVEPEDLIKF 300

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++     ILT+ ++ +  Q+++L + EG+ L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALVKILTEPKNAITKQFRKLFEMEGVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407


>gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
 gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
          Length = 426

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ  AK+ +++A+ N ++R    +   + EL   NILLVGPTG GK
Sbjct: 68  TPQEIIATLDEYVIGQHQAKKILSVAVHNHYKRLNHSSKSGEVELAKSNILLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILF+  GAF                                      P DL     
Sbjct: 241 DTTNILFVCGGAFAGLDKIISDRGEKTSIGFSASVRAQDERRVGEVLRALEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++S    ILT+ ++ L+ QY+ L + E + L F E ++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDESALIQILTEPKNALVKQYQRLFEMEDVELTFHESALQEIAK 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             +     +   GAR L+++ME++L D  F    L+  + VVI  E V
Sbjct: 361 RGI-----IRATGARGLRSIMEKILLDTMFELPALEGVREVVISDEVV 403


>gi|198276173|ref|ZP_03208704.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
 gi|198270985|gb|EDY95255.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
          Length = 393

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD+Y+IGQ DAKR +A+A+ N ++R   P D  D E+   NI++VG TG GKT
Sbjct: 46  PKDIKEFLDQYVIGQDDAKRYLAVAVYNHYKRLLQPKDKNDVEIEKSNIIMVGSTGTGKT 105

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ R
Sbjct: 106 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 157



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 158 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 217

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 218 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKEAVKIDRGNLMQYIAPQDLKSFGLI 277

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 278 PEIIGRLPVLTYLNPLDRMALRNILTEPKNSIIKQYVKLFEMDGVKLEFEPEVFEYIVDK 337

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D+ F     Q +  V+  +Y +  +G
Sbjct: 338 AIEYK-----LGARGLRSIVETIMNDVMFEIPSQQTERFVVTLDYAKQQMG 383


>gi|159043936|ref|YP_001532730.1| ATP-dependent protease ATP-binding subunit ClpX [Dinoroseobacter
           shibae DFL 12]
 gi|189044133|sp|A8LJA7|CLPX_DINSH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157911696|gb|ABV93129.1| ATP-dependent Clp protease [Dinoroseobacter shibae DFL 12]
          Length = 419

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 64  TPQEICDVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAGKTDIELAKSNILLIGPTGCGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 175



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 235

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 236 DTTNILFICGGAFAGLEKIIAQRGKGSAIGFGADVKENDTRGVGEMFGELEPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L FTED+++A+A 
Sbjct: 296 IPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDALNAIAG 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L++++E +L +  F    L
Sbjct: 356 RAIERKT-----GARGLRSILEDILLNTMFDLPGL 385


>gi|320354137|ref|YP_004195476.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus
           propionicus DSM 2032]
 gi|320122639|gb|ADW18185.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus
           propionicus DSM 2032]
          Length = 422

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P+EI + LD+Y++GQ+ AKR +++A+ N ++R   P    D  EL   NI+L+GPTG 
Sbjct: 66  LKPKEIKAYLDQYVVGQEHAKRILSVAVHNHYKRISAPPADDDAVELQKSNIILIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 126 GKTLVAQTLARLLKVPFTIADATTLTEAGYVGEDVENILVSLLQAADYDIEKAQR 180



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 60/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++EG+  SV  K G          I
Sbjct: 181 GIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTMASVPPKGGRKHPQQELVRI 240

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           +T +ILFI  GAF                      VS+             P DLL    
Sbjct: 241 DTTNILFIVGGAFVGLDGVIKRRTGTQAMGFGAKVVSQKERSIGEVLASIQPEDLLKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   ++ L + D   IL + ++ L  QY++L + EG+ L FTE +  A+A 
Sbjct: 301 IPELVGRLPVIATMEELVEEDLIRILKEPKNALSKQYQKLFEYEGVTLRFTEGAFKAIAQ 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFP 427
            A+   S     GAR L++VME  + D+ +   SD      VI+ + +    G++P
Sbjct: 361 KALARKS-----GARGLRSVMEECMLDVMYELPSDEHATECVINEQVIT--NGEYP 409


>gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans
           lithotrophicus ES-1]
 gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans
           lithotrophicus ES-1]
          Length = 418

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 69/111 (62%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +       EL   NILLVGPTG GKT 
Sbjct: 68  PHEICARLDEYVIGQRQAKKILSVAVYNHYKRLKSTDADGVELAKSNILLVGPTGSGKTL 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V  ++R
Sbjct: 128 LAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYDVERAQR 178



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S           T++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTKASIPPQGGRKHPNTEFLQV 238

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313
           +T +ILFI  GAF                                 V R   P DL+   
Sbjct: 239 DTSNILFICGGAFDGLEKVIRNRSEKAGIGFSANLAKRDESNDIGKVLRGVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++    ILT+ ++ L  QY++L   EG+ L+F E  ++ +A
Sbjct: 299 LIPEFVGRLPVVATLEGLDEAALIQILTEPKNALTKQYQKLFSMEGVELEFREGVLNVIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E  L D  F
Sbjct: 359 KKALERKT-----GARGLRSILENALLDTMF 384


>gi|260892393|ref|YP_003238490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex
           degensii KC4]
 gi|260864534|gb|ACX51640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex
           degensii KC4]
          Length = 420

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NIL++GPTG GK
Sbjct: 63  TPKEIKEFLDQYVIGQEHAKKTLAVAVYNHYKRVHLGGKIDDVELQKSNILMLGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 123 TLLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLVQAA 166



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 176 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313
           +T +ILFI  GAF          +SR                         P DLL    
Sbjct: 236 DTTNILFICGGAFEGIEKIIQNRISRKSMGFGAELVVQREQDLGKILRQILPQDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L + D   ILT+  + LI QY++L + +G+ L+F  ++I A+A 
Sbjct: 296 IPEFVGRLPIIVTLDPLTEDDLVRILTEPRNALIRQYQKLFELDGVQLEFQPEAIRAIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 356 EALRRNT-----GARGLRAILEEIMLNVMY 380


>gi|223044104|ref|ZP_03614143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus capitis SK14]
 gi|314933829|ref|ZP_07841194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus caprae C87]
 gi|222442498|gb|EEE48604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus capitis SK14]
 gi|313653979|gb|EFS17736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus caprae C87]
          Length = 420

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P+D   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSDDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|58038574|ref|YP_190538.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
 gi|81352673|sp|Q5FUR4|CLPX_GLUOX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58000988|gb|AAW59882.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
          Length = 421

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ +AKRA+++A+ N ++R    A   D E+   NILL+GPTG GK
Sbjct: 64  TPKEICKVLDDYVIGQFEAKRALSVAVHNHYKRLAHAAKSSDIEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVDRAQR 176



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313
           +T ++LFI  GAF V                                    P DLL    
Sbjct: 237 DTTNMLFICGGAFAVWTRSFRRVARDRASASVQMCVLMTSVVLGAILQSVEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++S    IL+  ++ LI QY  L + EG+ L FTED++ A+A 
Sbjct: 297 IPEFIGRLPVIAALNDLDESALIQILSKPKNALIKQYGRLFEMEGVKLTFTEDALAAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L++++E +L    F    L+
Sbjct: 357 RAIERKT-----GARGLRSILESILLGTMFDLPGLE 387


>gi|326693800|ref|ZP_08230805.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc
           argentinum KCTC 3773]
          Length = 415

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV++L+ Y+IGQ+DAK+ +A+A+ N ++R  +        EL   NI L+GPTG G
Sbjct: 64  TPHEIVAQLNDYVIGQEDAKKTLAVAVYNHYKRINEHFAPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 65/239 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELIQV 237

Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313
           +T +ILFI  GAF                    H +               +P DL+   
Sbjct: 238 DTTNILFIVGGAFAGIDTIIKERLGERVIGFGSHANENAAALDDDNILKYVQPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L  L  SD   ILT+ ++ LI QY+ L+  + + L+F  D+++A+A
Sbjct: 298 LIPEFIGRLPIVTVLDELTVSDLVRILTEPKNALIKQYQALLGLDDVALEFQPDALEAMA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHI 423
           ++A+  ++     GAR L++++E V++D+ F   S  D+ +    K  V+D     LH+
Sbjct: 358 ELAIKRHT-----GARGLRSIIEHVMKDVMFDIPSRDDVAKVVITKASVLDGAQPELHL 411


>gi|15837790|ref|NP_298478.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           9a5c]
 gi|21263488|sp|Q9PE40|CLPX_XYLFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9106158|gb|AAF83998.1|AE003953_2 ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa 9a5c]
          Length = 426

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GKT
Sbjct: 69  PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238

Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313
            ++T +ILFI  GAF                               V +      P DL+
Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D++ 
Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A  A+   +     GAR L+T++E VL D  +
Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387


>gi|32476155|ref|NP_869149.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopirellula
           baltica SH 1]
 gi|46576445|sp|Q7UKU7|CLPX_RHOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|32446699|emb|CAD76535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula
           baltica SH 1]
          Length = 466

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 11/213 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           SPR IV  LD Y+IGQ  AKR +A+A+ N ++R    AD  +   E+   NILL GPTG 
Sbjct: 114 SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 173

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V  ++R     
Sbjct: 174 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 233

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178
           DEV +  S N    I   + G+    +  ++    + +          E      D SN 
Sbjct: 234 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 293

Query: 179 FDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209
             I GG  VGI  +    L  + +G G    +R
Sbjct: 294 LFICGGTFVGIEEIIRRRLGHRTLGFGEGANVR 326



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 60/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI + +    I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 229 GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQL 288

Query: 292 NTDHILFIASGAF-------------------------HVSRPADL-------------- 312
           +T +ILFI  G F                         +   P +L              
Sbjct: 289 DTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTPGELVAQVQTEDILKFGL 348

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  +L+ L+      +LT+ +++L+ QY+ L   E   L+FTE+++ A+A 
Sbjct: 349 IPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVKQYQALFAMENCELEFTEEALHAIAK 408

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            AV+       +GAR L+ +ME V+ DI +   DL E+
Sbjct: 409 KAVDKG-----VGARGLRGIMEDVMLDIMY---DLPEQ 438


>gi|325268721|ref|ZP_08135350.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           multiformis DSM 16608]
 gi|324988965|gb|EGC20919.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           multiformis DSM 16608]
          Length = 412

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      +V+R           P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L   +GI L FT+ ++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFGMDGITLSFTDPALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  F     + K+  +  EYVR  +
Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 64  PKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166


>gi|330814218|ref|YP_004358457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487313|gb|AEA81718.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 380

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           SP+EI S LD Y+IGQ+ AK+ +++A+ N ++R            EL   NILL+GPTG 
Sbjct: 21  SPKEIFSTLDEYVIGQKTAKQILSVAVHNHYKRLNYEGKNNKGDVELAKSNILLMGPTGC 80

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 81  GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 135



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 136 GIVYIDEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 195

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 196 DTTNILFICGGAFAGIDKIISSRDKGSSIGFGSKLNTKAEKKVGELLKSIEPEDLLKFGL 255

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L++     IL + +++L  QY +L + EG+ L+F++D++ A+A 
Sbjct: 256 IPEFIGRLPIISTLEDLDEDSLVKILEEPKNSLTKQYAKLFEIEGVKLNFSKDALKAIAG 315

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L++++E VL +  F
Sbjct: 316 KAI-LRKT----GARGLRSIIEEVLLETMF 340


>gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
           HTCC2601]
          Length = 421

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           SPREI   LD Y+IGQ  AKR +++A+ N ++R    Q  +D+  EL   NILL+GPTG 
Sbjct: 65  SPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T +ILFI  GAF  + R                                 P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDPEERGTGEVFKDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVTILTAPKNALVKQYQRLFEMEDTQLTFTDDALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    + E T VV++ E V
Sbjct: 358 KAIERKT-----GARGLRSILEGILLDTMFELPGMDEVTEVVVNDEAV 400


>gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi
           DSS-3]
 gi|81350417|sp|Q5LUP9|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria
           pomeroyi DSS-3]
          Length = 424

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 67  TPRDICDVLDDYVIGQSTAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 180



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 241 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRASDERGVGELFTELEPEDLLKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT+D++ A+A 
Sbjct: 301 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDDALKAIAK 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 361 RAIERKT-----GARGLRSIMEDILLDTMFDLPSMDNVTKVVVNEEAV 403


>gi|218768389|ref|YP_002342901.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis Z2491]
 gi|21263484|sp|Q9JTX8|CLPX_NEIMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121052397|emb|CAM08729.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis Z2491]
          Length = 414

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|227874922|ref|ZP_03993074.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35243]
 gi|269976477|ref|ZP_06183462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris 28-1]
 gi|306818246|ref|ZP_07451976.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|307701823|ref|ZP_07638837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris FB024-16]
 gi|227844499|gb|EEJ54656.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35243]
 gi|269935278|gb|EEZ91827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris 28-1]
 gi|304648985|gb|EFM46280.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|307613081|gb|EFN92336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris FB024-16]
          Length = 419

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R    +   D   E+   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQMYVIGQENAKRALSVAVYNHYKRVRAMRRGEDSGMEMTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQDFIEI 237

Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314
           NT  ILFIA+GAF                                    P DL     +P
Sbjct: 238 NTSSILFIAAGAFAGIDEIVKARLGQRSTGFGSDLKSMKEHGDLYAKVTPDDLHKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  ++ +LN  D   +LT+ ++ ++ QY+ L + +G+ L FT+++I  +A VA
Sbjct: 298 EFIGRLPVITNVSALNVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDEAIREVARVA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRL 421
               +     GAR L T+ME+ L  I F   S  D+ E  V+I+ E V +
Sbjct: 358 EKRGT-----GARSLSTLMEQTLAAIMFDLPSRDDVAE--VIIEPECVSM 400


>gi|189219853|ref|YP_001940494.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum
           infernorum V4]
 gi|189186711|gb|ACD83896.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum
           infernorum V4]
          Length = 484

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVG 60
           L F F+P++I + LDR++I Q++AK+ +++A+ + +   ++ L        + +N+LLVG
Sbjct: 19  LQFQFTPKDIKAYLDRFVIKQEEAKKVLSVAVCDHYNQVKEALMGRGPAHYVKQNVLLVG 78

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+GVGKT + R LA   G P +K + TKF+E GYVG +VE ++R+L+  A
Sbjct: 79  PSGVGKTYLVRCLADCIGVPMVKADATKFSETGYVGADVEDLVRELIQQA 128



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 70/238 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D++ + R+ IQ  E       +GI++LDE DK+ A     G  VS  GVQ +LL L+E +
Sbjct: 116 DVEDLVRELIQQAEGDVEIAQFGIIYLDEVDKL-ATSHFMGRDVSGRGVQSNLLKLLEET 174

Query: 283 SVSTKYG----------------------SINTDHILFIASGAF--------------HV 306
            V  K                        +INT +ILFI SGAF              H+
Sbjct: 175 DVPIKAAHDVLGQMQSLFDFQKGAKAPRKTINTRYILFIVSGAFEKLSEIVQKRIRRSHL 234

Query: 307 SR--------PADLL--------------PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                     P+D++              PE  GR PVRV  + L K D   +L D+E +
Sbjct: 235 GFQPHGPEGIPSDIIAEAKTADFVEYGLEPEFIGRLPVRVFCQPLGKDDLFHVLRDSEGS 294

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++ QYK      GI L FTE+++  +A+ A+   +     GAR L T+ E++L    F
Sbjct: 295 ILKQYKSSFAAYGIELKFTEEALQLIAEQAMEEKT-----GARGLMTICEKILRPFRF 347


>gi|117926915|ref|YP_867532.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetococcus sp.
           MC-1]
 gi|166214782|sp|A0LDT3|CLPX_MAGSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117610671|gb|ABK46126.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Magnetococcus
           sp. MC-1]
          Length = 420

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 5/115 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           +P EI S LD Y+IGQ +AKR +A+A+ N ++R +     AD+  E+   N+L++GPTG 
Sbjct: 64  TPMEIKSTLDDYVIGQDNAKRTLAVAVYNHYKRLESNDTSADV--EISKSNVLMIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LARL   PF   + T  TE GYVG +VE II  L+  A N V +++R
Sbjct: 122 GKTLLAQTLARLLDVPFTITDATTLTEAGYVGEDVENIILRLLQAADNDVEKAQR 176



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 106/234 (45%), Gaps = 60/234 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+  S            +Y  +
Sbjct: 177 GIVFIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQV 236

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T +IL I  GAF+                                       P DLL  
Sbjct: 237 DTTNILVICGGAFNGLEKVIEKRSSKHHGIGFGATVRKNSKEESVNVLLKELEPEDLLAF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L+K     ILT+ ++ L+ QY++L++ E + L FT+ +++AL
Sbjct: 297 GLIPEFVGRLPVVATLEELSKEALVRILTEPKNALVKQYQKLLEMENVKLTFTDGALEAL 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           A  A+   +     GAR L+ ++E  L DI F     Q  + VVI+ E V   I
Sbjct: 357 AQRAIERKT-----GARGLRALLESTLLDIMFEIPSKQGVREVVINREVVEKQI 405


>gi|227548724|ref|ZP_03978773.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079191|gb|EEI17154.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 429

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADL----RD---ELMPKNILLV 59
           P EIV  LDRY+IGQ  AKR +A+A+ N ++R   Q PA L    RD   E+   NILL+
Sbjct: 67  PSEIVGFLDRYVIGQDSAKRTLAVAVYNHYKRIRSQSPASLSSRKRDDDVEIAKSNILLL 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 GPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 58/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 185 QHGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFI 244

Query: 290 SINTDHILFIASGAF---------HVSR-------------------------PADL--- 312
            I+T +ILFI +GAF          V +                         P DL   
Sbjct: 245 QIDTTNILFIVAGAFAGLDKVIAERVGKRGIGFGAEIDSKSERDNSNLLGQVMPGDLVKF 304

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR P+  +++ L++     +L + +++L+ QY  L   +G  L+ T+D++  +
Sbjct: 305 GLIPEFIGRLPILANVEDLDRDALVRVLKEPKNSLVKQYSRLFALDGAELELTDDALGEI 364

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           AD A    +     GAR L+ +ME +L  + F   D ++ T VVI AE VR
Sbjct: 365 ADRAAERKT-----GARGLRAIMEELLVPVMFDLPDREDVTRVVISAEVVR 410


>gi|325266076|ref|ZP_08132762.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982714|gb|EGC18340.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
          Length = 427

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P ++V++L+ ++IGQ++AK+A+A+A+ N ++R + P AD R EL   N+L++GPTG GK
Sbjct: 72  TPAQLVAQLNEHVIGQENAKKALAVAVYNHYKRLRQPEADSRVELNKSNVLMIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T + + LAR    PF   + T  TE GYVG +VE II  L+
Sbjct: 132 TYMVQSLARQLNVPFAMADATTLTEAGYVGEDVETIITKLL 172



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ +
Sbjct: 184 HGIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTMASVPQQGGRRNPNQQFIN 243

Query: 291 INTDHILFIASGAF----------------------HVS-------------RPADLL-- 313
           ++T +ILFI  GAF                      H                P DL+  
Sbjct: 244 VDTSNILFICGGAFAGLDKVIRQRTEKGGIGFGADVHSKDEDSKIGELFAQVEPEDLIKF 303

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E   L+  E ++ A+
Sbjct: 304 GLIPELIGRLPVLTSLNELDEDALVRILTEPKNALVKQYQALFAMENKTLEMDESALRAV 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A +A+   +     GAR L+++MERVL D  +   DL E   VV+  E+V
Sbjct: 364 AQLAMKRKT-----GARGLRSIMERVLLDTMYLLPDLPEVAKVVVRREHV 408


>gi|118443245|ref|YP_878862.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium novyi
           NT]
 gi|229889851|sp|A0Q2L0|CLPX_CLONN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118133701|gb|ABK60745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           novyi NT]
          Length = 431

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GKT
Sbjct: 63  PSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLARLLNVPFAMADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    S P DLL    
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSTVQSKEEKDIGELLKESVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+ S    IL + ++ L+ QYK+L+  + + L+F ++++ A+AD
Sbjct: 295 IPEFIGRLPIMVTLQSLDNSALVRILKEPKNALVKQYKKLLLMDNVELEFEDEALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E  + DI F   S    K V+I+ + ++
Sbjct: 355 EAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKVIINKDTIK 398


>gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 422

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPQEIIAVLDDYVIGQSFAKKVLSVAVHNHYKRLAHAAKSNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    +V+ P D                   L
Sbjct: 238 DTANILFICGGAFAGLDKIISDRGRKTSIGFAANVAGPDDRRTGDVFRQVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    IL + ++ L+ QY+ L + E + L F ED++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEAALVQILEEPKNALVKQYQRLFEMENVELSFHEDALRAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+    V+ +E V
Sbjct: 358 KAIERKT-----GARGLRSIMEAMLLDTMFDLPTLEGVQEVVISEDV 399


>gi|325264757|ref|ZP_08131486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
 gi|324030049|gb|EGB91335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
          Length = 423

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                  H   P DL    
Sbjct: 236 IDTTNILFICGGAFEGIDKMIETRLDKKSIGFNAEIASKHEENVDVLLHQVLPQDLVKYG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F ++++ A+A
Sbjct: 296 LIPELVGRLPVTVSLDMLDKEALIRILTEPKSAIVKQYQKLLELDGVRLEFDKEALYAIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + ++   +     GAR L+ +ME ++ D  F   SD   K   I  E V+
Sbjct: 356 ETSLARKT-----GARGLRAIMEDIMMDTMFKVPSDDTIKACRITKEAVK 400


>gi|323343309|ref|ZP_08083536.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis
           ATCC 33269]
 gi|323095128|gb|EFZ37702.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis
           ATCC 33269]
          Length = 414

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I + LD+Y+IGQ +AKR +++++ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 67  PKDIKAYLDQYVIGQDEAKRYLSVSVYNHYKRLQQPKDENGVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 127 LLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 169



 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 238

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 239 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L FTE+++D + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIVKQYVKLFEMDGIKLSFTEEALDYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV       ++GAR L++++E ++ D  F     + K   +  EY +
Sbjct: 359 AVEY-----ELGARGLRSIVESIMMDAMFEIPSKRLKNFEVTREYTQ 400


>gi|190573023|ref|YP_001970868.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia K279a]
 gi|254524793|ref|ZP_05136848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
 gi|229485949|sp|B2FQR3|CLPX_STRMK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|190010945|emb|CAQ44554.1| ATP-dependent clp protease ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia K279a]
 gi|219722384|gb|EED40909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
          Length = 429

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +      D EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDDVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSSERKQEVGKVLAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L + E + L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407


>gi|253681026|ref|ZP_04861829.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
 gi|253562875|gb|EES92321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
          Length = 431

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GKT
Sbjct: 63  PSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSNVDIDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174



 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    S P DLL    
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLKESVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SLN      IL + ++ L+ QYK+L+  + + L+F E+++ ++AD
Sbjct: 295 IPEFIGRLPIMVTLQSLNNDALVRILKEPKNALVKQYKKLLLMDNVELEFEEEALKSIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A++  +     GAR L++++E V+ DI F   S    K V+I+ + +
Sbjct: 355 EAISRKT-----GARGLRSIIEEVMRDIMFDIPSKYDIKKVIINKDTI 397


>gi|160893843|ref|ZP_02074626.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
 gi|156864495|gb|EDO57926.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
          Length = 430

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ++AK+ +++A+ N ++R     D   EL   NIL+VGPTG GK
Sbjct: 62  LKPKEIREFLDQYVIGQEEAKKVLSVAVYNHYKRIMADKDFDVELQKSNILMVGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 165



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 64/245 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  S            ++  
Sbjct: 174 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPHQEFIQ 233

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T +ILFI  GAF                                      P D     
Sbjct: 234 IDTSNILFICGGAFDGLEKIIDNRIGKKAIGFNAEVVDKTEQDIGELLKQVTPQDFVKYG 293

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L  LNK     ILTDT+S +  QYK+L + +G+ L+F +D++ A+A
Sbjct: 294 LIPEFVGRLPITVTLDLLNKDALVRILTDTKSAICKQYKKLFELDGVELEFDKDALYAIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-------ASDLQEKTVVIDAEYVRLHIG 424
           + A+   +     GAR L++++E+   D+ +        A  +  K V+ D     +   
Sbjct: 354 EEAMERKT-----GARGLRSIIEKATLDLMYEIPSDDKVAKCVITKEVITDGAQPEITYS 408

Query: 425 DFPSE 429
           D P+E
Sbjct: 409 DNPAE 413


>gi|134300400|ref|YP_001113896.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum
           reducens MI-1]
 gi|134053100|gb|ABO51071.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Desulfotomaculum reducens MI-1]
          Length = 416

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ  AKR +A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 61  PKEIKDILDQYVIGQDSAKRQLAVAVYNHYKRINLGGKVEDVELSKSNIVMLGPTGCGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 60/227 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T +ILFI  GAF  + +                                 P DLL    
Sbjct: 233 DTTNILFICGGAFDGIDKIIQNRTGKKQLGFGAEIETQKEKKIGEILANILPEDLLKFGL 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT+ ++ L  QY++L + +G+ L+   +S+  +A 
Sbjct: 293 IPEFVGRLPVIVTLDALDEEALVRILTEPKNALTKQYQKLFELDGVDLELQPESLREVAK 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
            A+   +     GAR L+ +ME  +  I +   S  D+ +  +  DA
Sbjct: 353 EALKRKT-----GARGLRAIMEEAMLGIMYDIPSREDISKVVITKDA 394


>gi|254455799|ref|ZP_05069228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082801|gb|EDZ60227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 422

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI S LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG G
Sbjct: 61  SPKEICSVLDDYVIGQPHAKKVLSVAVHNHYKRLNYENKTSKNVELAKSNILLVGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 121 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 174



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 62/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGADVKNTQDKKTGEWMKTLEPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L++     IL + +++L  QY+EL K +G  L F E+++  +A 
Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLIKILQEPKNSLTKQYQELFKLDGAKLTFKENALKEIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
            A++  +     GAR L++++E +L    +   S  +++E  V++DA   R
Sbjct: 355 KAISKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDAGAAR 398


>gi|83592886|ref|YP_426638.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum
           rubrum ATCC 11170]
 gi|123739541|sp|Q2RU44|CLPX_RHORT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83575800|gb|ABC22351.1| ClpX, ATPase regulatory subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 422

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP++I+  LD Y+IGQQ AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPKDILKVLDDYVIGQQHAKKVLSVAVHNHYKRLSQAGKNSDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 90/210 (42%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIISARGKGSSIGFGADVRDPEARRTGEVLRAVEPEDLLKYGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L F ED++  +A 
Sbjct: 298 IPEFVGRLPVLATLDDLDEDALVDILTTPKNALVKQYQRLFEMESTQLSFKEDALRCIA- 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
               L +     GAR L+++ME +L D  F
Sbjct: 357 ----LKAIARKTGARGLRSIMEGILLDTMF 382


>gi|194595679|gb|ACF77122.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum
           brasilense]
          Length = 422

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRGPDERSTGDILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+F++D++  ++ 
Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISH 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L   ++++++ E V
Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 400


>gi|288803881|ref|ZP_06409306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica D18]
 gi|288333646|gb|EFC72096.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica D18]
          Length = 412

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 64  PKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      +V++           P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHTVGYNSVQNVAKIDKNDLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L FTE ++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIELTFTEAALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            V        +GAR L++++E V+ D  F     + K+  +  EYVR  +
Sbjct: 356 GVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400


>gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp.
           PRwf-1]
 gi|172048458|sp|A5WC69|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           sp. PRwf-1]
          Length = 425

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 14/117 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI   LD Y+IGQ+ AK+A+++A+ N ++R ++ A L +              EL  
Sbjct: 67  TPKEIREHLDGYVIGQETAKKALSVAVYNHYKRLKVAAKLAEDKKQAKLGADDAMVELSK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 183



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   +G           +
Sbjct: 193 GIIYVDEIDKISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQELIQV 252

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +IL I  GAF                                       P DL+   
Sbjct: 253 DTSNILIIVGGAFSGLDKVIQQRTEKTGIGFNAEVKSKDDGKQLSELFKQVEPEDLIKFG 312

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ ++ QY+ L + E   L FTE  + A+A
Sbjct: 313 LIPELIGRLPVIATLEELDEEALMQILTEPKNAIVKQYQYLFEMEDAELSFTEAGLKAIA 372

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E  L D  +    + + K VV+D + +
Sbjct: 373 HKAMERKT-----GARGLRSIVENALLDTMYELPSMSDAKQVVVDEDVI 416


>gi|195494256|ref|XP_002094759.1| GE20032 [Drosophila yakuba]
 gi|194180860|gb|EDW94471.1| GE20032 [Drosophila yakuba]
          Length = 812

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 68/232 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST-------KYGS 290
           GIV+LDE DKI A       RD G       EGVQ+ +L ++EGS VS        +   
Sbjct: 542 GIVYLDEVDKICALSGTKQRRDIGG------EGVQQGMLKILEGSVVSLIDRSQQFRKVQ 595

Query: 291 INTDHILFIASGAFHV---------------------SRPAD------------------ 311
           ++T +ILF+ASGA+                       + P D                  
Sbjct: 596 MDTTNILFVASGAYTALDKIIARRLNEKDSDVAPTSGALPPDADQHKRDKCLSKVQACDL 655

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               ++PE  GRFP+ V   SLN +    ILT+  S L+ QYK L++ +G+ L F+ED++
Sbjct: 656 AEFGMIPEFVGRFPILVPFHSLNANMLVRILTEPRSALVSQYKALLRLDGVDLTFSEDAL 715

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +++A +A+ +N+     GAR L+++ME++L D  FS      + V I A+ V
Sbjct: 716 ESVAQLAIEMNT-----GARGLRSIMEQLLLDPMFSVPGSDIRGVHITADNV 762



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E ++  L+  A N V
Sbjct: 477 NIMMLGPTGSGKTLIAKSIAKCLDVPFAICDCTSLTQAGYVGEDIESVLLKLLQDANNDV 536

Query: 115 RESR 118
             ++
Sbjct: 537 ERAQ 540


>gi|227544995|ref|ZP_03975044.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300909970|ref|ZP_07127430.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri SD2112]
 gi|130893166|gb|ABO32596.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri]
 gi|227185012|gb|EEI65083.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300892618|gb|EFK85978.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri SD2112]
          Length = 416

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R    +  D  D EL   NI ++GPTG 
Sbjct: 63  TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  L FT+ ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSKLTFTDGALRAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
            +A+  N+     GAR L++++E V+ D+ F   S  D+++  V+ID   V  H
Sbjct: 357 QLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403


>gi|148543885|ref|YP_001271255.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           reuteri DSM 20016]
 gi|184153285|ref|YP_001841626.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           reuteri JCM 1112]
 gi|194468440|ref|ZP_03074426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           reuteri 100-23]
 gi|227364793|ref|ZP_03848841.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           MM2-3]
 gi|325682582|ref|ZP_08162099.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri MM4-1A]
 gi|167009017|sp|A5VJ94|CLPX_LACRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148530919|gb|ABQ82918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri DSM 20016]
 gi|183224629|dbj|BAG25146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri JCM 1112]
 gi|194453293|gb|EDX42191.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           reuteri 100-23]
 gi|227070137|gb|EEI08512.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           MM2-3]
 gi|324978421|gb|EGC15371.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 416

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R    +  D  D EL   NI ++GPTG 
Sbjct: 63  TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  L FT+ ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSQLTFTDGALRAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
            +A+  N+     GAR L++++E V+ D+ F   S  D+++  V+ID   V  H
Sbjct: 357 QLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403


>gi|296134053|ref|YP_003641300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola
           sp. JR]
 gi|296032631|gb|ADG83399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola
           potens JR]
          Length = 419

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD+Y+IGQ+ AK+A+A+A+ N ++R  +   + D EL   NI+++GPTG GK
Sbjct: 63  KPREIKEILDQYVIGQEPAKKALAVAVYNHYKRINMGNKIDDVELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 236 DTTNILFICGGAFDGIEKIIQNRIGKKTLGFGAEIKSQKEKNVGDILKHI-LPEDLLKFG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L++L+++    ILT+  + LI QY++L + + I L+FT+D++  +A
Sbjct: 295 LIPEFVGRLPVIVTLEALDENALVRILTEPRNALIKQYQKLFELDNIALEFTDDALRTIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 355 QEAMKRNT-----GARGLRAIIEDIMLEVMY 380


>gi|260591258|ref|ZP_05856716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           veroralis F0319]
 gi|260537123|gb|EEX19740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           veroralis F0319]
          Length = 412

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++A+ N ++R Q P +D   E+   NI++VG TG GKT
Sbjct: 64  PKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKSDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166



 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------HV--------------------SRPADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNAHVIGYNSVQNVAKIDKKDLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L FTE ++D + D 
Sbjct: 296 PEIIGRLPVLTYLSPLDREALRNILIEPKNSIVKQYIKLFEMDGIKLTFTEAALDCIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  F       K   +  +YVR  +
Sbjct: 356 AVEYK-----LGARGLRSIVESVMMDAMFEVPSRDVKEFEVTEQYVRQQL 400


>gi|28378738|ref|NP_785630.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           WCFS1]
 gi|254556941|ref|YP_003063358.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|300768256|ref|ZP_07078161.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180930|ref|YP_003925058.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|38257506|sp|Q88VE2|CLPX_LACPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28271575|emb|CAD64480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           plantarum WCFS1]
 gi|254045868|gb|ACT62661.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|300494320|gb|EFK29483.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046421|gb|ADN98964.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 421

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------LMPKNILLVGP 61
           +P+EIV ELD+Y+IGQ +AKR +++A+ N ++R +  AD  +E      L   NI LVGP
Sbjct: 63  TPKEIVDELDQYVIGQNEAKRTLSVAVYNHYKRVKAMADNDEETEDGPELQKSNISLVGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TGSGKTFLAQSLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 171



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 60/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 181 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 240

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T +ILFI  GAF      V R                               P DLL  
Sbjct: 241 DTTNILFIVGGAFDGIEDIVKRRLGDKTIGFGTDTDGKNAVLDDSKSLMQQVVPEDLLQF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L+ L + D   ILT+ ++ L+ QY+ L+  +G  LDF +D++ A+
Sbjct: 301 GLIPEFIGRLPILTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           A  A+  N+     GAR L++++E  + DI +     ++ K V+I  E V  H
Sbjct: 361 AQEALARNT-----GARGLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADH 408


>gi|323703642|ref|ZP_08115285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531414|gb|EGB21310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum nigrificans DSM 574]
          Length = 416

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 61  PKEIKAILDQYVIGQESAKKQLAVAVYNHYKRINLGGKVEDVELSKSNIIMLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 232

Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313
           +T +ILFI  GAF                         R            P DLL    
Sbjct: 233 DTTNILFICGGAFDGIEKIIQNRTGKKTMGFGAEIQSKREQKIGEILAQILPEDLLKFGL 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT+ ++ L  QY++L + +G+ L+   D++  +A 
Sbjct: 293 IPEFVGRLPVIVTLDALDEGALVRILTEPKNALTKQYEKLFELDGVSLEIQPDALREVAK 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ +ME V+ +I +
Sbjct: 353 EALKRKT-----GARGLRAIMEEVMLNIMY 377


>gi|255536256|ref|YP_003096627.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342452|gb|ACU08565.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
          Length = 393

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 173 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 232

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           NT +ILFIA GAF                      +++  D                 L+
Sbjct: 233 NTQNILFIAGGAFDGIKEIIERRLNKQAIGFSAEKLNKTEDEDYILSQLNAIDLRKFGLI 292

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GRFP+  +L+ L K     I+ + ++++I Q+ EL K +G+ L FT++++DA+ + 
Sbjct: 293 PELLGRFPIVTYLEKLTKETMVRIMKEPKNSIINQFVELFKMDGVSLQFTDEAVDAIVEE 352

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            ++       +GAR L+   E+VLED  F     +E  VV++ + V+ 
Sbjct: 353 TMDKG-----LGARGLRGTTEKVLEDYMFDIEAQEE--VVLNKDNVKF 393



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI + LD+Y+IGQ  AK+ +++A+ N ++R     D   E  +   NI+++G TG GK
Sbjct: 60  PKEIKTFLDQYVIGQDQAKKQLSVAVYNHYKRLLHAKDENREVEIEKSNIIMIGETGTGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA
Sbjct: 120 TLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 163


>gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72]
 gi|166214754|sp|A1K782|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72]
          Length = 422

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI   LD+Y+IGQ  AKR +++A+ N ++R +  +  +DE  L   NILL+GPTG G
Sbjct: 66  TPHEICQILDQYVIGQAQAKRNLSVAVYNHYKRLRHLSGRQDEVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPNQDFIQV 239

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312
           +T ++LFI  GAF     V R                              P DL     
Sbjct: 240 DTTNVLFICGGAFDGLDKVIRNRTEKMGIGFGAEVKSRQGKNLTETFRQVEPEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL + ++ L+ QY++L   EG+ L+    ++ A+A 
Sbjct: 300 IPEFVGRLPVVATLQELDEDALIQILIEPKNALVKQYQKLFSMEGVDLEIRPAALHAVAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
            A+   +     GAR L++++E  L DI +    L   EK VV
Sbjct: 360 KAIKRKT-----GARGLRSILEAALLDIMYDLPQLDGVEKVVV 397


>gi|332300232|ref|YP_004442153.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177295|gb|AEE12985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 439

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS ++            K+  +
Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT  ILFI +GAF                                  H++    R   L+
Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L +L+      IL + ++ +  QY++L + +G+ L F ED++  +  V
Sbjct: 325 PEIIGRLPILTYLDALDSDSLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHV 384

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E+++ D  +    L+ KT+ I  +Y R
Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 11/110 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE--------LMPKNIL 57
           P+EI + LDRY+IGQ DAK+ +++A+ N ++R    Q   +  DE        +   NI+
Sbjct: 83  PQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRILASQEKGEKSDESSKLDDVEIAKSNII 142

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           +VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+
Sbjct: 143 MVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192


>gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|238691227|sp|B2IGP2|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 421

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPREICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISTRGKTTSIGFAASVQAPDDRRTGEIFRKVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E   L F +++++ +A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L D  F    L
Sbjct: 358 KAIERKT-----GARGLRSIMESILLDTMFDLPGL 387


>gi|304391392|ref|ZP_07373334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
           R2A130]
 gi|303295621|gb|EFL89979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
           R2A130]
          Length = 427

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  L+ Y+IGQ  AKR +++A+ N ++R    A+  D EL   NI+L+GPTG GK
Sbjct: 68  TPQEILDVLNDYVIGQPHAKRVLSVAVHNHYKRLNHAAENEDVELAKSNIMLIGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFIA GAF                    +V  P D                   L
Sbjct: 241 DTTNILFIAGGAFAGLDKIISDRGRQTGIGFGANVESPEDRKTGELFKALEPEDLLRFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++ A+A 
Sbjct: 301 IPEFVGRIPVLATLEDLDEDSLVQILSEPKNALIKQYQRLFEMEEVTLSFQEDALRAIAQ 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    L+  + VVI  E V
Sbjct: 361 KAITRKT-----GARGLRSIIEGILLDTMFELPSLEGVQEVVISEEVV 403


>gi|170016865|ref|YP_001727784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
 gi|238688952|sp|B1MXT8|CLPX_LEUCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169803722|gb|ACA82340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
          Length = 415

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P +IV+EL+ Y+IGQ+DAK+ +A+A+ N ++R  + +      EL   NI L+GPTG G
Sbjct: 64  TPHQIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENVSPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQSA 168



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 62/229 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          
Sbjct: 177 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTNASVPPQGGRKHPQQELIQ 236

Query: 291 INTDHILFIASGAF------------------------------------HVSRPAD--- 311
           ++T +ILFI  GAF                                    HV +P D   
Sbjct: 237 VDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAVALDSENILEHV-QPEDMTK 295

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + + L F  ++++A
Sbjct: 296 FGLIPEFIGRLPIVTVLDELKVDDLTKILTEPKNALIKQYTALLGLDDVELVFQPEALEA 355

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           +A++A+  ++     GAR L++++E V++DI F   + D  EK ++  A
Sbjct: 356 MAELAIKRHT-----GARGLRSIIESVMKDIMFDIPSRDDVEKVIITKA 399


>gi|51891497|ref|YP_074188.1| ATP-dependent protease ATP-binding subunit ClpX [Symbiobacterium
           thermophilum IAM 14863]
 gi|61211457|sp|Q67SJ9|CLPX_SYMTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51855186|dbj|BAD39344.1| ATP-dependent Clp protease ATP-binding subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ+ AKR +A+A+ N ++R  L + L D EL   NIL++GPTG GKT
Sbjct: 65  PAEIKAILDQYVIGQERAKRTLAVAVYNHYKRINLGSKLDDVELQKSNILMLGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           NT +ILFI  GAF          V R                         P DLL    
Sbjct: 237 NTTNILFICGGAFDGIDKIIANRVGRSGLGFGADIRSKQEQNVGELLKQIMPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L++     IL + ++ L+ QY++L++ + I L+F E+++ A+A 
Sbjct: 297 IPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ D+ +
Sbjct: 357 EALRRNT-----GARGLRAIIEDIMTDVMY 381


>gi|299066732|emb|CBJ37926.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CMR15]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------L 312
           +T +ILFI  GAF      +++ +D                                  L
Sbjct: 242 DTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAL 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|114569889|ref|YP_756569.1| ATP-dependent protease ATP-binding subunit ClpX [Maricaulis maris
           MCS10]
 gi|122316140|sp|Q0AQ06|CLPX_MARMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114340351|gb|ABI65631.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Maricaulis
           maris MCS10]
          Length = 423

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI + L+ Y+IGQ  AKR +A+A+ N ++R    +   D EL   NILL+GPTG GK
Sbjct: 67  SPQEIFNVLNDYVIGQAHAKRVLAVAVHNHYKRLNHASQNSDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 127 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 179



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILF+  GAF      +S+                             P DLL    
Sbjct: 240 DTTNILFVVGGAFAGLDKVISQRGQGSSIGFGADVREPDARRTGEILREVEPDDLLRFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L + EG+ L FTED++ A+A+
Sbjct: 300 IPEFVGRLPVIATLEDLDIGALVQILTEPKNALVKQYQRLFEMEGVGLTFTEDALKAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L +  F    L+  + +V++ E V
Sbjct: 360 RAIARKT-----GARGLRSIMEGILLETMFDLPSLEGVEEIVVNGEVV 402


>gi|114330231|ref|YP_746453.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha
           C91]
 gi|122314710|sp|Q0AJI3|CLPX_NITEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114307245|gb|ABI58488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosomonas
           eutropha C91]
          Length = 427

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 5/117 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGPT 62
           +P EI   LD+Y+IGQ+ AK+ +++A+ N ++R     ++ A   D EL   NILL+GPT
Sbjct: 65  TPHEICETLDQYVIGQESAKKILSVAVYNHYKRLRNLSKVNAGSDDIELAKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+  + + V +++R
Sbjct: 125 GSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQASNHDVEKAQR 181



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++            + ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTAALVPPQGGRKHPNQEFIQV 241

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313
           +T +ILFI  GAF     + R                               P DL+   
Sbjct: 242 DTTNILFICGGAFDGIDKIIRARSEKSGIGFGADVINQNDRKELNKILGDIEPEDLIKYG 301

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDAL 370
             PE  GR PV   L+ LN++    IL + ++ L+ QY +L   E G+ L+F E ++  +
Sbjct: 302 LIPEFIGRLPVVATLRELNEAALIQILIEPKNALVKQYSKLFSMEGGVELEFREQALVTI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A  A+   +     GAR L++++E  L DI +    ++  + V+
Sbjct: 362 ARKALARKT-----GARGLRSILEETLLDIMYDLPSIKNVSKVV 400


>gi|331270304|ref|YP_004396796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
 gi|329126854|gb|AEB76799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
          Length = 431

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GKT
Sbjct: 63  PSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDIDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    S P DLL    
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLKASVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SLN +    IL + ++ L+ QYK+L+  + + L+F E+++ A+AD
Sbjct: 295 IPEFIGRLPIMVTLQSLNNNALVRILKEPKNALVKQYKKLLLMDNVELEFEEEALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A++  +     GAR L++++E  + DI F   S    K V+I+ + +
Sbjct: 355 EAISRKT-----GARGLRSIIEETMRDIMFDIPSKYDIKKVIINKDTI 397


>gi|313885837|ref|ZP_07819580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924741|gb|EFR35507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 439

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS ++            K+  +
Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT  ILFI +GAF                                  H++    R   L+
Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L +L+      IL + ++ +  QY++L + +G+ L F ED++  +  V
Sbjct: 325 PEIIGRLPILTYLDALDSDSLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHV 384

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E+++ D  +    L+ KT+ I  +Y R
Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 13/111 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------LMPKNI 56
           P+EI + LDRY+IGQ DAK+ +++A+ N ++R  L +  +DE            +   NI
Sbjct: 83  PQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRI-LASQEKDEKSDESSKLDDVEIAKSNI 141

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           ++VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+
Sbjct: 142 IMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192


>gi|167464585|ref|ZP_02329674.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322383233|ref|ZP_08057044.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152502|gb|EFX45288.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 419

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI S LD+Y+IGQ  AK+++++A+ N ++R    + L D EL   NI+LVGPTG GKT
Sbjct: 64  PKEICSILDQYVIGQDQAKKSLSVAVYNHYKRINSQSKLEDVELQKSNIVLVGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                  +  P DLL     
Sbjct: 236 DTTNILFICGGAFDGLEQIIKRRIGKKVIGFSTDGAKLDLKPGEYLSMVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT+ ++ L+ QY++L++ + + L+F +++++A++  
Sbjct: 296 PEFVGRLPVVSTLEPLDEAALVRILTEPKNALVKQYQKLLEMDNVKLEFEKEALEAISQE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A+  N+     GAR L+ ++E ++ D+ F   + +D+ E T+  D
Sbjct: 356 AIKRNT-----GARGLRAIIESIMLDVMFDVPTRTDVTECTITQD 395


>gi|109899440|ref|YP_662695.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           atlantica T6c]
 gi|123170858|sp|Q15R47|CLPX_PSEA6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|109701721|gb|ABG41641.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas atlantica T6c]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R +   D+ D  EL   NILL+GPTG G
Sbjct: 67  TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLMGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAHTGTGIGFGTAIKDSSNKSKEGELLKKVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ L++     IL + +++L  QY  L   E   L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFREDALQAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL D  +    +     VV+D   +R
Sbjct: 360 AKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405


>gi|228470546|ref|ZP_04055403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
 gi|228307673|gb|EEK16649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
          Length = 439

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS ++            K+  +
Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT  ILFI +GAF                                  H++    R   L+
Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L +L+      IL + ++ +  QY++L + +G+ L F ED++  +  +
Sbjct: 325 PEIIGRLPILTYLDALDSESLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVSI 384

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E+++ D  +    L+ KT+ I  +Y R
Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 13/111 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56
           P+EI + LDRY+IGQ DAK+ +++A+ N ++R  L +  +D            E+   NI
Sbjct: 83  PQEIDAYLDRYVIGQSDAKKYLSVAVYNHYKRI-LASQEKDGKSDESSKLDDVEIAKSNI 141

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           L+VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+
Sbjct: 142 LMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192


>gi|113867497|ref|YP_725986.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha
           H16]
 gi|123033070|sp|Q0KBK3|CLPX_RALEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113526273|emb|CAJ92618.1| ATP-dependent Clp protease ATP-binding subunit (ClpX) [Ralstonia
           eutropha H16]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVKSKEERDASEVLPQTEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLSKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPGALSAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            A+   +     GAR L++++E+ L D+ +   + +  + VVID   +    GD P
Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN---GDAP 409


>gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha
           JMP134]
 gi|123760219|sp|Q472D2|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia
           eutropha JMP134]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDETALVQILIEPKNALVKQYQKLLAMEGVELEIRPAALSAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            A+   +     GAR L++++E+ L D+ +   + +  + VVID   +    GD P
Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDESTIN---GDAP 409


>gi|310287697|ref|YP_003938955.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum S17]
 gi|309251633|gb|ADO53381.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum S17]
          Length = 437

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 64/234 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254

Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311
             +I+T  ILFI  GAF                        H  +P +            
Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   L  L ++D   ILT+ ++ L+ QY+++   +G+ L FTE +++A
Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLAFTEQAVNA 374

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           +A  A+   +     GAR L++++E+ LE+  F   S  D+Q+  V++DA  VR
Sbjct: 375 IASTAITRGT-----GARGLRSIIEKTLEETMFELPSMDDVQQ--VIVDAASVR 421



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 26/126 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------------ 44
           P EI + LDRY+IGQ  AKR +++A+ N ++R  +                         
Sbjct: 65  PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDPL 124

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           AD+  E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++
Sbjct: 125 ADV--EVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182

Query: 105 DLVDVA 110
            L+  A
Sbjct: 183 RLISAA 188


>gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
 gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
          Length = 422

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ  AKR +++A+ N ++R    A   +E  L   NILL+GPTG G
Sbjct: 65  TPREICAVLDDYVIGQVHAKRVLSVAVHNHYKRLNHAAKSNNEIELAKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T +ILFI  GAF  + R                                 P DLL    
Sbjct: 239 DTTNILFICGGAFAGLERIIAQRSKGQGMGFNANVREVDERGVGELFMELEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+      ILT+ ++ L+ QY+ L   E + L FTED++ A+A 
Sbjct: 299 IPEFVGRLPVIATLTDLDVDALIQILTEPKNALVKQYQRLFDIEAVKLTFTEDALKAIAS 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A+   +     GAR L+++ME +L D  F    L+  + V+  E   LH
Sbjct: 359 KAIERKT-----GARGLRSIMEGILLDTMFELPGLETVSEVVVNEDAVLH 403


>gi|288800854|ref|ZP_06406311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332315|gb|EFC70796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 417

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ DAKR +A+A+ N ++R    AD    E+   NI++VG TG GKT
Sbjct: 74  PQEIKKYLDQYIIGQDDAKRYLAVAVYNHYKRLNQSADDDGVEIEKSNIIMVGSTGTGKT 133

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 134 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 176



 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 186 GIVFIDEIDKIARKADNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 245

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 246 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNLRNVDKEDLMKYILPQDLKSFGLI 305

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  HL  LN+   R IL + +++++ QY++L   +GI L+F    +D + D 
Sbjct: 306 PEIIGRLPVLTHLNPLNREALRRILVEPKNSIVKQYEKLFAMDGIKLEFDTAVLDYVVDK 365

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D  F     ++K+  +  +Y + HI
Sbjct: 366 AVEYK-----LGARGLRSIVEAMMIDAMFEVPSSKKKSFKVTLDYAQKHI 410


>gi|163753151|ref|ZP_02160275.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
 gi|161326883|gb|EDP98208.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
          Length = 410

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT++ILFIA GAF      ++R                            P DL     +
Sbjct: 234 NTENILFIAGGAFDGIDRVITRRLNMQAVGYSASKDEEAIDTDNLLQYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+ +  R ILT+ ++ +I QYK+L + + I  D TE +++ + + 
Sbjct: 294 PEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFEMDSIEFDITEGALEFIVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  F      EK + I   Y
Sbjct: 354 AIQYK-----LGARGLRSLCETILTDAMFDLPGSDEKELKITKTY 393



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P++I + LD +IIGQ   K+ +++A+ N ++R  Q P     E+   NI++VG TG GKT
Sbjct: 62  PKQIKAFLDEFIIGQGATKKVMSVAVYNHYKRLLQAPTKDDIEIQKSNIIMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|294788440|ref|ZP_06753683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
 gi|294483871|gb|EFG31555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
          Length = 419

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGK 66
           +P E+V++L+ ++IGQ+ AK+++A+A+ N ++R   P +  + EL   NILL+GPTG GK
Sbjct: 65  TPAELVAQLNDHVIGQELAKKSLAVAVYNHYKRLNTPVEEGKVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR    PF   + T  TE GYVG +VEQII  L++     V +++R
Sbjct: 125 TLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLNKCDGDVAKAQR 177



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 62/243 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            K+  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTLASVPPQGGRRNPNQKFIDV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENINVTELFESVEPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG  L+F  D++ ++A
Sbjct: 298 LIPELIGRLPVIATLEELDEAALVNILTEPKNALVKQYQALFAMEGAQLEFEHDALVSIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
            +A+   +     GAR L++++ER L D  +   DL++   V+    V   + D+ +   
Sbjct: 358 KLAMKRKT-----GARGLRSIVERALLDTMYRLPDLKDVAKVV----VTQSVIDYETPPK 408

Query: 432 MYH 434
           MYH
Sbjct: 409 MYH 411


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AK+ +A+A+ N ++R    +   + EL   NILLVGPTG GK
Sbjct: 67  NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFHV------------------------SRPAD---------------L 312
           +T +ILFI  GAF                          +RP                 L
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    IL++ ++ LI QY+ L   E + L F ED++  +A 
Sbjct: 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E++L D  F    L+  + VI
Sbjct: 360 CAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVI 396


>gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166710929|ref|ZP_02242136.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|81311961|sp|Q5H433|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123522986|sp|Q2P6Y9|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 428

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L   EG+ L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|300691405|ref|YP_003752400.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
 gi|299078465|emb|CBJ51117.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|168186117|ref|ZP_02620752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
 gi|169296071|gb|EDS78204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
          Length = 431

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GKT
Sbjct: 63  PSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   + ++ R
Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAER 174



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    S P DLL    
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSDVQSKDEKDIGELLKESVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+      IL + ++ L+ QYK+L+  + + L+F ++++ ++AD
Sbjct: 295 IPEFIGRLPIMVTLQSLDNDALVKILKEPKNALVKQYKKLLLMDNVELEFEDEALKSIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E  + DI F   S    K V+I+ + ++
Sbjct: 355 EAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKVIINKDTIK 398


>gi|241663133|ref|YP_002981493.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|309781949|ref|ZP_07676680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
 gi|240865160|gb|ACS62821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|308919293|gb|EFP64959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFH----------------------------VSR------PADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKTGIGFGAEVQSKEERDVSEVLPQVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|332305575|ref|YP_004433426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172904|gb|AEE22158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R +   D+ D  EL   NILL+GPTG G
Sbjct: 67  TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLMGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAHTGTGIGFGSAIKDISNKSKEGELLKKVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ L++     IL + +++L  QY  L   E   L+F +D++ A+
Sbjct: 300 GLIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFRDDALQAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL D  +    +     VV+D   +R
Sbjct: 360 AKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405


>gi|188578370|ref|YP_001915299.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|238689531|sp|B2SMI2|CLPX_XANOP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|188522822|gb|ACD60767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 428

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGVKVKSSERKQEVGKILAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L   EG+ L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|83745914|ref|ZP_00942971.1| ClpX [Ralstonia solanacearum UW551]
 gi|300703973|ref|YP_003745575.1| ATPase and specificity subunit of clpx-clpp ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
 gi|83727604|gb|EAP74725.1| ClpX [Ralstonia solanacearum UW551]
 gi|299071636|emb|CBJ42960.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           +T +ILFI  GAF                       SR             P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKSGIGFGAEVKSREERDVNEVLPQVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
 gi|23813860|sp|Q8PNI4|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123585731|sp|Q3BWQ0|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
          Length = 428

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L   EG+ L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|187928949|ref|YP_001899436.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
 gi|238691846|sp|B2UFQ3|CLPX_RALPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187725839|gb|ACD27004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFH----------------------------VSR------PADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKTGIGFGAEVQSKEERDVSEVLPQVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+     + A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSGLTAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|17546431|ref|NP_519833.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum
           GMI1000]
 gi|21263463|sp|Q8XYP6|CLPX_RALSO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17428729|emb|CAD15414.1| probable atp-dependent clp protease atp-binding subunit clpx
           protein [Ralstonia solanacearum GMI1000]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------L 312
           +T +ILFI  GAF      +++ +D                                  L
Sbjct: 242 DTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + +  + VVID
Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400


>gi|308050307|ref|YP_003913873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas
           balearica DSM 9799]
 gi|307632497|gb|ADN76799.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas
           balearica DSM 9799]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +   D  + EL   NILL+GPTG GK
Sbjct: 68  TPHEIRAHLDEYVIGQEQAKKVLAVAVYNHYKRLRHGGDEAEVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 180



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH----------------------------------VSR--PADL--- 312
           +T  ILFI  GAF                                    +R  P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRAFTGTGIGFGAEVRSKDDGKSLTETFARVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L   EG+ L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVVATLGELDEDALIQILQEPKNALTKQYGALFDLEGVELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +     Q+   VV+D   ++
Sbjct: 361 ARKAMERKT-----GARGLRSIVEGVLLDTMYDLPSAQDVSKVVVDESVIK 406


>gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 103P14B1]
 gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 101P30B1]
          Length = 438

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|194289505|ref|YP_002005412.1| ATP-dependent protease ATP-binding subunit clpx [Cupriavidus
           taiwanensis LMG 19424]
 gi|238692761|sp|B3R4W2|CLPX_CUPTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193223340|emb|CAQ69345.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus taiwanensis LMG 19424]
          Length = 425

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVKSKEERDVSEVLPQTEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPGALSAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            A+   +     GAR L++++E+ L D+ +   + +  + VVID   +    GD P
Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN---GDAP 409


>gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 422

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI++ LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILL+GPTG GK
Sbjct: 65  SPQEIIAVLDDYVIGQAYAKKVLSVAVHNHYKRLAHASKNNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTANILFICGGAFAGLDRIISDRGRKTSIGFAANVEAPDERKSGELFRQVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL + ++ L+ QY+ L + E + L F ED++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEAALVQILREPKNALVKQYQRLFEMESVQLTFQEDALGAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+++ME +L D  F    L+
Sbjct: 358 KAIERKT-----GARGLRSIMEAMLLDTMFDLPTLE 388


>gi|171913851|ref|ZP_02929321.1| ATPase AAA-2 domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 542

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 9/117 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMP 53
           L F + P +I + LDR++I Q DAK+ +A A+ + +   ++  ++R          E   
Sbjct: 67  LDFRYRPADIKAYLDRFVIRQDDAKKVLATAVCDHYNHARMLREMRRRDPKAADEVEFAK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +N+++VGPTGVGKT + + +A L G PF+K + TKF+E GYVG +V+ ++RDLV  A
Sbjct: 127 QNVIIVGPTGVGKTYLVKHIADLIGVPFVKADATKFSETGYVGADVDDLVRDLVTKA 183



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 65/258 (25%)

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           D  D + D+ T    +I + E +GI++LDE DK+       G  V+  GVQ  LL L+E 
Sbjct: 171 DVDDLVRDLVTKANGNIDLAE-HGIIYLDEVDKLATAGDRPGRDVNGRGVQTTLLKLMEE 229

Query: 282 SSVSTKYGS----------------------INTDHILFIASGAF--------------- 304
           + VS    +                      +NT ++LF+ SGAF               
Sbjct: 230 TEVSLHAPNDMRSQIQMMFEMRKGDAPRRQVVNTRNVLFVVSGAFSGLEKIIERRVSKGS 289

Query: 305 -----------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                             ++R  D +      E  GR PVRV   SL   D   I+  +E
Sbjct: 290 IGFGAAVREDVISGTPLRLARTQDFIDYGFEAEFIGRLPVRVVCDSLTADDLFDIMKSSE 349

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +LI Q++   +  GI   F + ++   A  A    +     GAR L TV E+ L D  F
Sbjct: 350 GSLIRQFEREFQAYGIHATFDDSALRVKARQAAEEKT-----GARGLMTVWEKSLRDFKF 404

Query: 403 SASDLQEKTVVIDAEYVR 420
               L  K +++D   +R
Sbjct: 405 ELPSLGLKELLVDETLLR 422


>gi|194364615|ref|YP_002027225.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia R551-3]
 gi|238693450|sp|B4SLN2|CLPX_STRM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194347419|gb|ACF50542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia R551-3]
          Length = 429

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +    +   EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSAERKQEVGKVLAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L + E + L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407


>gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
 gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
          Length = 424

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPRDICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHGSKQDVELAKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 58/236 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFHV------------------------SR----------PADLL---- 313
           +T +ILFI  GAF                          SR          P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDRIIAQRGKGSAIGFGADVKDPESRGAGELFKELEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTPDAMKAIAA 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            A+   +     GAR L+++ME +L D  F    ++  + VV++ E V +  G  P
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGMEGVREVVVNDEAVEMANGAKP 407


>gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis O35E]
          Length = 438

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis CO72]
          Length = 438

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|299535609|ref|ZP_07048930.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
 gi|298728809|gb|EFI69363.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
          Length = 423

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GKT
Sbjct: 64  PKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDIELAKSNIVLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFIVGGAFDGIETIIKRRQGEKVIGFGSDPNIVDVDEGSIMSKLIPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ LN++    ILT+ ++ L  QY+++++ +G+ L+F ED++ A+A  
Sbjct: 296 PEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEDALVAIAKE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+   +     GAR L++++E  + D+ +     ++ K  +I A+ +
Sbjct: 356 AIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTI 397


>gi|126653683|ref|ZP_01725602.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|169829419|ref|YP_001699577.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           sphaericus C3-41]
 gi|238688198|sp|B1HVE5|CLPX_LYSSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126589720|gb|EAZ83855.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|168993907|gb|ACA41447.1| ATP-dependent Clp protease ATP-binding subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 423

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GKT
Sbjct: 64  PKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDVELAKSNIVLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFIVGGAFDGIESIIKRRQGEKIIGFGSDPNIVDVDEGSIMSKLIPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ LN++    ILT+ ++ L  QY+++++ +G+ L+F E ++  +A  
Sbjct: 296 PEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEGALAEIAKE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+   +     GAR L++++E  + D+ +     ++ K  +I A+ +
Sbjct: 356 AIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTI 397


>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding specificity subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300074679|gb|ADJ64078.1| ATP-dependent protease (ATP-binding specificity subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQEITELLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR+   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADL----- 312
           +T +I+FI  GAF                                    + P DL     
Sbjct: 240 DTTNIMFICGGAFDGLARIISDRSEKSGIGFSASVKSQTQKSNSEVLLNAEPEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     IL + ++ LI QY +L++ EG  L+    ++ A+A 
Sbjct: 300 IPELVGRLPVIATLNELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
            A+   +     GAR L++++E  L D+ +   S+     VV+D
Sbjct: 360 KALARKT-----GARGLRSILEHALLDVMYELPSEQNVAKVVVD 398


>gi|126663139|ref|ZP_01734137.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria
           bacterium BAL38]
 gi|126624797|gb|EAZ95487.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria
           bacterium BAL38]
          Length = 410

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PAD-----LL 313
           NT +ILFIA GAF                         H+ +        P D     L+
Sbjct: 234 NTQNILFIAGGAFDGIERIISKRLNRQAVGYSSSIGTDHIDKDNLLQYLIPKDVKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+ +  R ILT+ ++ L+ QYK+L + + + L+  E++++ +   
Sbjct: 294 PEIIGRLPVLTHMDPLDAATLRAILTEPKNALVKQYKKLFEMDEVTLEIEEEALNYIVSK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  +     ++K + ++ EY
Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSEDKHLQVNKEY 393



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
             P+EI + LD Y+IGQ   K+ +++A+ N ++R  Q+  +   E+   NIL+VG TG G
Sbjct: 60  LKPKEIRAFLDDYVIGQDQTKKVMSVAVYNHYKRLMQIQLEDEVEIEKSNILMVGQTGTG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 120 KTLVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|261855008|ref|YP_003262291.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Halothiobacillus neapolitanus c2]
 gi|261835477|gb|ACX95244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothiobacillus neapolitanus c2]
          Length = 434

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 13/113 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------------ELMPK 54
           +P+E+V  LD Y+IGQQ AKRA+A+A+ N ++R  L    R              EL   
Sbjct: 63  TPKELVEALDEYVIGQQRAKRALAVAVYNHYKRLNLFGSTRKVAEKDKDSDSEPVELSKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+
Sbjct: 123 NILLIGPTGSGKTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVENILQKLL 175



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 103/232 (44%), Gaps = 59/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 186 QHGIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTQASVPPQGGRKHPQQEFV 245

Query: 290 SINTDHILFIASGAFHV-------------------------SRPAD------------- 311
            ++T +ILFI  GAF                            R AD             
Sbjct: 246 QLDTTNILFICGGAFSGLDSIIRQRIEKGGIGFSAEVKSKDDKRAADELLTQIESEDLTR 305

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GR PV   L  L+++    IL + ++ L  QY  L + EG+ LD  ED++  
Sbjct: 306 YGLIPEFIGRLPVIATLNELDEAALVKILVEPKNALTKQYMRLFEMEGVELDLREDALRE 365

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A  A+   +     GAR L+T++E VL D  F     +  + VV+DA  VR
Sbjct: 366 VARQAIKRKT-----GARGLRTIVEHVLLDTMFDVPSTENVQKVVVDASVVR 412


>gi|218128448|ref|ZP_03457252.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697]
 gi|217989339|gb|EEC55652.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697]
          Length = 414

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYIKLFEMDGVELTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D+ F      +K++V+  +Y R
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEVPSEHKKSLVVTLDYAR 400



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P EI + LD+YIIGQ DAKR +A+++ N ++R  Q   D   E+   NI++VG TG GKT
Sbjct: 67  PVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178


>gi|313668518|ref|YP_004048802.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           ST-640]
 gi|313005980|emb|CBN87437.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           020-06]
          Length = 414

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGDNVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DLQ  K VV+
Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397


>gi|281421758|ref|ZP_06252757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           copri DSM 18205]
 gi|281404253|gb|EFB34933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           copri DSM 18205]
          Length = 409

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 233

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 234 DTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKKDLMQYILPQDLKSFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + +++++ QY++L + +GI L F E+++D + D 
Sbjct: 294 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYQKLFEMDGIKLKFDEEALDYIVDK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E V+ D  F     + K+  +  EY +  +
Sbjct: 354 AVEYK-----LGARGLRSIVEAVMMDAMFEIPSEKVKSFTVTLEYAKQQL 398



 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD YIIGQ  AKR +A+A+ N ++R Q P D    E+   NI++VG TG GKT
Sbjct: 62  PVEIKKYLDEYIIGQDQAKRNLAVAVYNHYKRLQQPKDEDGVEIEKSNIIMVGSTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A++   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 122 LLARTIAKMLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 164


>gi|317475726|ref|ZP_07934985.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA]
 gi|316908109|gb|EFV29804.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA]
          Length = 414

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYIKLFEMDGVELTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D+ F      +K++V+  +Y R
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEVPSEHKKSLVVTLDYAR 400



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P EI + LD+YIIGQ DAKR +A+++ N ++R  Q   D   E+   NI++VG TG GKT
Sbjct: 67  PVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178


>gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 46P47B1]
          Length = 438

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG 
Sbjct: 89  PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +
Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263

Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312
           +T +IL I  GAF                  H    A                      L
Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F  +++ A+A 
Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A    +     GAR L++++E  L D  +   S +D+ E
Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418


>gi|71083580|ref|YP_266299.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062693|gb|AAZ21696.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 422

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG GK
Sbjct: 62  PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 62/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGANVKKTDDKKTGEWMKTLEPEDLLKYGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L++     IL + +++LI QY+EL K +G  L F E++I  +A 
Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENAIKEIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
            A+N  +     GAR L++++E +L    +   S  +++E  V++DA   +
Sbjct: 355 KAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDASAAK 398


>gi|91761999|ref|ZP_01263964.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717801|gb|EAS84451.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 422

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG GK
Sbjct: 62  PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 62/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGANVKKTDDKKTGEWMKTLEPEDLLKYGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L++     IL + +++LI QY+EL K +G  L F E++I  +A 
Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENAIKEIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
            A+N  +     GAR L++++E +L    +   S  +++E  V++DA   +
Sbjct: 355 KAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDASAAK 398


>gi|319408365|emb|CBI82018.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           schoenbuchensis R1]
          Length = 424

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R   Q    D+  EL   NILLVGPTG 
Sbjct: 67  TPQEILTVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNGDI--ELSKSNILLVGPTGC 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 GKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H   P DL     
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERRVGEIFHDLEPEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+ +    IL+  ++ L+ QYK L + E + L F ED++  +A+
Sbjct: 300 IPEFIGRLPIIATLEDLDINALVQILSQPKNALVKQYKRLFEMENVELTFHEDALRVIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L D  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLDTMFELPTLEGVQKVVISSDVV 402


>gi|259503088|ref|ZP_05745990.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|259168954|gb|EEW53449.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
          Length = 416

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 4/113 (3%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNIL 57
           K TF   +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R    +  +  D EL   NI 
Sbjct: 56  KQTFRVPTPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENNDTELQKSNIA 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 116 VIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTSNILFIVGGAFDGIENIVKERIGEKTIGFGTSSSARDNITEKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL+K +G  L FT+ ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALQKLDEQDLIRILTEPKNALVKQYQELIKLDGSELSFTDGALRAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++A+  N+     GAR L++++E V++D+ F
Sbjct: 357 ELAIKRNT-----GARGLRSIIEEVMQDVMF 382


>gi|260575567|ref|ZP_05843565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sp. SW2]
 gi|259022210|gb|EEW25508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sp. SW2]
          Length = 421

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPRDICKVLDDYVIGQIHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 57/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 237 DTTNILFICGGAFSGLEKIIAQRNKGSAIGFGAEVKGPEDRGVGELFKELEPEDLLKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVTLTFTPDALVAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
            A+   +     GAR L+++ME +L D  F    +   T V+  E
Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGMAGVTEVVVKE 396


>gi|332529293|ref|ZP_08405255.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
 gi|332041210|gb|EGI77574.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
          Length = 421

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ  AKR +A+A+ N ++R Q     R    EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDNYVIGQDAAKRTLAVAVYNHYKRLQHKETARKDEVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR    PF+  + T  TE GYVG +VE II  L+      V +++R
Sbjct: 127 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIAKLLQNCNYEVEKAQR 181



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 241

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      + R                             P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIERRTESSGIGFGAAVKSKTQRSLTEVFKEVEPEDLIKYGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L   EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVATLAELSEDALVQILTEPKNALVKQYAKLFGMEGVELEIRPTALAAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
                 S     GAR L+++ME+ L D  F    L   + VV+D   +  H
Sbjct: 362 -----KSLARKTGARGLRSIMEQSLIDTMFDLPTLSNVEKVVVDESTIEEH 407


>gi|289550569|ref|YP_003471473.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658064|ref|ZP_07910936.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           lugdunensis M23590]
 gi|289180101|gb|ADC87346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496393|gb|EFU84716.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           lugdunensis M23590]
          Length = 420

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI++ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMAHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L++L+    + ILT  ++ L+ QY ++++ + + L+FT+D++ A+++ A
Sbjct: 297 EFIGRVPVVANLETLDVKALKNILTQPKNALVKQYTKMLELDNVDLEFTDDALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L +I +
Sbjct: 357 IERKT-----GARGLRSIIEEALINIMY 379


>gi|282880881|ref|ZP_06289574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305263|gb|EFA97330.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
          Length = 414

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ DAKR +++++ N ++R Q P +    E+   NI++VG TG GKT
Sbjct: 68  PKEIKKYLDDYIIGQDDAKRYLSVSVYNHYKRLQQPKNEDGVEIEKSNIIMVGSTGTGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 128 LLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 170



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+             Y  +
Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 239

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                      HV             P DL     +
Sbjct: 240 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRNIDKGDLMKYILPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+K   R IL + +++++ QY +L + +GI L F  +++D + D 
Sbjct: 300 PEIIGRLPVLTYLNPLDKEALRKILVEPKNSIVKQYIKLFEMDGIQLTFANEALDFIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     + K+  +  +Y +
Sbjct: 360 AVEYK-----LGARGLRSIVESMMMDAMFEIPSKRTKSFEVTLDYAQ 401


>gi|119953394|ref|YP_945603.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia turicatae
           91E135]
 gi|119862165|gb|AAX17933.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia
           turicatae 91E135]
          Length = 435

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R     + RD   EL   NILLVGPTG 
Sbjct: 70  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRI-FKGNKRDNGVELEKSNILLVGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++++LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 GKTLLAKKLAAEMNVPFAMADATTLTEAGYVGEDVENILLKLIHAA 174



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          I
Sbjct: 184 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPKGGRKHPYECTIEI 243

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 244 NTQNILFICGGAFVGLENIIKKRINKSSIGFSSAGRKDSGEINSLKYLEMEDLVKFGLIP 303

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ L K D   IL + E++++ QY  + K + + L F  D++DA+A+ A
Sbjct: 304 EFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYCHMFKMDNVDLLFERDALDAIAEEA 363

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F   S  Q K V++  E V
Sbjct: 364 MLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 404


>gi|288941152|ref|YP_003443392.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Allochromatium
           vinosum DSM 180]
 gi|288896524|gb|ADC62360.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Allochromatium vinosum DSM 180]
          Length = 419

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI ++LD ++IGQ+ AK+ +++A+ N ++R ++     D E+   NILL+GPTG GKT
Sbjct: 63  PREINAKLDEFVIGQEKAKKVLSVAVYNHYKRLEVAEAKEDIEIAKSNILLIGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 162



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 175 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 235 DTSNILFIVGGAFAGLDKVIQNRSKKTGIGFSAEVQSKDDSRQISELLSAVEPEDLIRYG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++   LILT+ +  L+ QY  L + EG+ L+  +D++  ++
Sbjct: 295 LIPEFVGRLPVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDALREIS 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L+T+ME+VL D  +    +     VVIDA  +
Sbjct: 355 RKAMERKT-----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVI 398


>gi|160882387|ref|ZP_02063390.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483]
 gi|237719060|ref|ZP_04549541.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4]
 gi|260172006|ref|ZP_05758418.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp.
           D2]
 gi|299148143|ref|ZP_07041205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_23]
 gi|315920319|ref|ZP_07916559.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2]
 gi|156112200|gb|EDO13945.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483]
 gi|229451439|gb|EEO57230.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4]
 gi|298512904|gb|EFI36791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_23]
 gi|313694194|gb|EFS31029.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2]
          Length = 414

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +GI L F +D  + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y ++ +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKEYKVTLDYAKMQL 403



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178


>gi|124266486|ref|YP_001020490.1| ATP-dependent protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
 gi|166214784|sp|A2SFB6|CLPX_METPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|124259261|gb|ABM94255.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
          Length = 423

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ+ AKR +A+A+ N ++R    Q +      EL   NILL+GPTG 
Sbjct: 69  PGEIKASLDQYVIGQEPAKRTLAVAVYNHYKRLKHVQGVGKKEDVELAKSNILLIGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 GKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 171



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          I
Sbjct: 184 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 243

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 244 DTTNILFICGGAFDGLEKVIQNRSEKSGIGFGASVQSKTERKVSEVFREVEPEDLIKFGL 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY++L   +G+ L+    ++ A+A 
Sbjct: 304 IPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFAMDGVELEIRPSALTAIAQ 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+   +     GAR L+++ME  L D  F    +   + VV+D   +  H
Sbjct: 364 KALARKT-----GARGLRSIMEHSLMDTMFDLPTMDGVQKVVLDEHTIEEH 409


>gi|260909475|ref|ZP_05916179.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260636400|gb|EEX54386.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 410

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+             Y  +
Sbjct: 176 GIVFVDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTTVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + ++++I QY++L K +GI L F  +++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATETLDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ D  F     + K+  +  +Y R
Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKSFDVTLQYAR 397



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P +I + LD+YIIGQ +AKR +++++ N ++R + P  D   E+   NI++VG TG GKT
Sbjct: 64  PMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166


>gi|332291466|ref|YP_004430075.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169552|gb|AEE18807.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 410

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313
           +T++ILFIA GAF     H+S+                            P DL     +
Sbjct: 234 DTENILFIAGGAFDGIERHISKRLNMQAMGFVASKSEDVVEKDNMLKYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+    R ILT+ ++ +I QYK+L   + I L  T++++D +   
Sbjct: 294 PEIIGRLPVLTHMDPLDAGTLRAILTEPKNAIIKQYKKLFSMDDIELTITDEALDYMVGK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  F      EK++ +   Y
Sbjct: 354 AIEYK-----LGARGLRSLCEAILTDAMFDLPSSDEKSLNVTKTY 393



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ+  KR +++A+ N ++R   PA   D E+   NI++VG TG GKT
Sbjct: 62  PQEIKEFLDGYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 122 LIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173


>gi|269125775|ref|YP_003299145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
 gi|268310733|gb|ACY97107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
          Length = 425

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ+ AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG G
Sbjct: 64  PREIYEFLDSYVIGQEAAKKALSVAVYNHYKRIQSGDSGRDDSVELAKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTLLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 59/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAFH-------------------VSR----------------PADLL--- 313
           +T ++LFI  GAF                    V R                P DLL   
Sbjct: 238 DTTNVLFICGGAFAGLEKIIEARIGKQGMGFGAVIRSKDEASSSSDILSQIMPEDLLKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV  ++ +L++     ILT+ ++ L+ QYK L + +G+ L+FT D+++A+A
Sbjct: 298 MIPEFVGRLPVITNVHNLDRDALIAILTEPKNALVKQYKRLFELDGVELEFTPDALEAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D A+ L  T    GAR L+ +ME VL  + +     Q+   VVI  E V  H+
Sbjct: 358 DQAI-LRGT----GARGLRAIMEEVLLSVMYEVPSRQDVARVVITREAVLEHV 405


>gi|326432268|gb|EGD77838.1| ATP-dependent protease ATP-binding subunit [Salpingoeca sp. ATCC
           50818]
          Length = 603

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 59/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIVFLDE DKI +  SG+G+    VS EGVQ+ LL L+EG+  +V  K G          
Sbjct: 345 GIVFLDEIDKI-SSISGSGVATRDVSGEGVQQALLKLLEGTVVNVPEKGGRKSPRGETIQ 403

Query: 291 INTDHILFIASGAFH-----------------------VSRPAD---------------- 311
           I+T +ILFIASGAF+                        ++P D                
Sbjct: 404 IDTSNILFIASGAFNGLEDLIKKREEKGSIGFNAALKTPNKPVDGQMLRKVQADDLVKFG 463

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFP  VHL++L +SD   +LT+ +++L+ QY+ L + E   L F+  S+ A A
Sbjct: 464 LIPEFVGRFPCVVHLEALTESDLVRVLTEPKNSLVSQYRALFRMENTDLVFSSSSLRAFA 523

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A++  +     GAR L+T +E+VL
Sbjct: 524 KKALDRKT-----GARGLRTFIEQVL 544



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 11/111 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           P+EI+  L+ Y+IGQ  AK+ +A+A+ N ++R  + A+L++         +    NILL 
Sbjct: 227 PKEILDNLNDYVIGQDHAKKTLAVAVYNHYKR--VSANLKEASSSAAHDVQFEKSNILLA 284

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT ++R LA +   PF   + T  T+ GYVG +VE ++  L+   
Sbjct: 285 GPTGSGKTLLARTLANILNVPFAISDCTTLTQAGYVGEDVESVLYRLLQAC 335


>gi|323340666|ref|ZP_08080918.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323091789|gb|EFZ34409.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 410

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 7/123 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNI 56
           +LT   +P+EIV  L++Y+IGQ +AK+ +A+A+ N ++R  + A L DE     L   NI
Sbjct: 57  ELTDVLTPKEIVKTLNQYVIGQNEAKKTLAVAVYNHYKR--INAMLEDENEDTELQKSNI 114

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            L+GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 115 CLIGPTGSGKTYLAQSLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVER 174

Query: 117 SRR 119
           ++R
Sbjct: 175 AQR 177



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKILEGTIANVPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313
           +T +ILFI  GAF                                     P DLL     
Sbjct: 238 DTTNILFIVGGAFDGIEKIVKNRLGDKTIGFGVEARKNYDESKSLMQQIIPEDLLKFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ L+ QY +L+  +   L F +D++  +A +
Sbjct: 298 PEFIGRLPIITALEKLTEDDLVRILTEPKNALVKQYAKLLSFDDCELVFEDDALREVARL 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
           A+  N+     GAR L++++E  + D+ F   SD     VVI  E V
Sbjct: 358 AIERNT-----GARGLRSIIEATMRDVMFDVPSDKNIAKVVITKETV 399


>gi|257455805|ref|ZP_05621031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter
           aerosaccus SK60]
 gi|257446819|gb|EEV21836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter
           aerosaccus SK60]
          Length = 427

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 14/117 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI S LD Y+IGQ  AK+ +A+A+ N ++R ++   L +              EL  
Sbjct: 69  TPKEIRSHLDEYVIGQDKAKKTLAVAVYNHYKRLKVSEKLSEDKALTTLGAEDAMVELSK 128

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 129 SNILLIGPTGSGKTLLAQTLARLLDVPFALADATTLTEAGYVGEDVENIVQKLLQAA 185



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 195 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPNQEMIQV 254

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +IL I  GAF                                       P DL+   
Sbjct: 255 DTSNILVICGGAFAGLDNVIQQRTEKTGIGFNAEVKAKDSGKKTGELFKQVEPEDLIKFG 314

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D++ A+A
Sbjct: 315 LIPELIGRLPVVATLEELDEEALVQILTEPKNALVKQYEYLFEMENATLSFTDDALVAIA 374

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E  L D  +    +   KTV ++
Sbjct: 375 KQALKRRT-----GARGLRSIVENALLDTMYELPSMTPGKTVTVN 414


>gi|224476765|ref|YP_002634371.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254763863|sp|B9DNC0|CLPX_STACT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222421372|emb|CAL28186.1| protease ClpX [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 420

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+ +L+ Y+IGQ  AK+++++A+ N ++R QQL P D   EL   N+ L+GPTG G
Sbjct: 63  TPKEIMDQLNNYVIGQDKAKKSLSVAVYNHYKRIQQLGPKDNEVELQKSNVALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 167



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T +ILFI  GAF                                 H+ RP DL     +
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEAAKYDESALLEHI-RPEDLQSYGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+  +L++L+ +  + ILT  ++ L+ QYK++++ + + L+FTE+++ A+A+ 
Sbjct: 296 PEFIGRIPIVANLETLDIAALKNILTQPKNALVKQYKKMLELDHVELEFTEEALTAIAEK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           A+   +     GAR L++++E  L +I +   +SD   K V+ D
Sbjct: 356 AIERKT-----GARGLRSIIEESLIEIMYDIPSSDDVAKVVITD 394


>gi|147677140|ref|YP_001211355.1| ATP-dependent protease ATP-binding subunit ClpX [Pelotomaculum
           thermopropionicum SI]
 gi|146273237|dbj|BAF58986.1| ATP-dependent protease Clp, ATPase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 427

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+++A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 72  PKEIKEILDQYVIGQESAKKSLAVAVYNHYKRINLGGKIDDVELQKSNIVMLGPTGSGKT 131

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 132 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 174



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 243

Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DLL    
Sbjct: 244 DTTNILFICGGAFDGIEKIIMNRIGKKAMGFGAEIKARKELKIGEILSKILPEDLLKYGL 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L++     ILT+  + L+ QY++L + +G+ L+FT+D++ A+A+
Sbjct: 304 IPEFVGRLPIIVTLDALDEEALIRILTEPRNALVKQYEKLFELDGVTLEFTQDALKAVAE 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E V+ D+ +
Sbjct: 364 EALKRNT-----GARGLRAILEEVMLDVMY 388


>gi|310829090|ref|YP_003961447.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
 gi|308740824|gb|ADO38484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
          Length = 421

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI ++LD Y+I Q  AKRA+A+A+ N ++R     D  D  EL   NI+L+GPTG G
Sbjct: 62  TPREIKAKLDEYVISQHRAKRALAVAVYNHYKRINAMLDSDDDVELQKSNIILIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAQTLARVLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 166



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 176 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      + R                             P DLL    
Sbjct: 236 DTSNILFICGGAFDGMDGVIERRMEKGSMGFSATIKTSDEKAKEELLDNIEPQDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L++L++     ILT+ ++ L+ QYK++ + EG+ L+F +D++ A+A+
Sbjct: 296 IPEFIGRIPVIATLQNLDEEALINILTEPKNALVKQYKKMFEIEGVALEFEKDALKAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N T    GAR L+ ++E ++ DI F
Sbjct: 356 KALQ-NGT----GARGLRGIIENIMTDIMF 380


>gi|293369499|ref|ZP_06616078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CMC 3f]
 gi|292635384|gb|EFF53897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CMC 3f]
          Length = 414

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +GI L F +D  + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y ++ +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKEYKVTLDYAKMQL 403



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVSEAEQ 178


>gi|283781925|ref|YP_003372680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula
           staleyi DSM 6068]
 gi|283440378|gb|ADB18820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula
           staleyi DSM 6068]
          Length = 428

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREIV+ LD+Y++GQ  +KR +++A+ N ++R  L  +  + E+   NIL+VGPTG GK
Sbjct: 76  TPREIVAHLDQYVVGQMGSKRVLSVAMHNHYKRLSLGFEGSEVEIEKSNILMVGPTGSGK 135

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 136 TLLARTLARIMNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 70/234 (29%)

Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286
           G++++DE DKI        + RD      VS EGVQ+ LL ++EG+  +           
Sbjct: 189 GVLYIDEIDKIGKTSQNVSITRD------VSGEGVQQALLKMLEGTVANVPPQGGRKHPE 242

Query: 287 -KYGSINTDHILFIASGAF-------------------HVSRPAD--------------- 311
            +Y  ++T +ILFI  G F                    ++  +D               
Sbjct: 243 QQYIQMDTTNILFICGGTFVGLEDIIRKRLGRKTLGFGQMTGHSDEATTSEILGQATTED 302

Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L+ +    +LT+ ++ L+ QY+ L + E   L+F++ +
Sbjct: 303 ILEFGLIPELVGRLPVLTSLRPLDHAGLVKVLTEPKNALLRQYQTLFEMEDSHLEFSQGA 362

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++A+A  A+   +     GAR L++++E  + DI F   D  + +  VID E +
Sbjct: 363 LEAIARRALEKGT-----GARGLRSIVEEAMVDIMFELPDQPKGSKFVIDEEVI 411


>gi|169831634|ref|YP_001717616.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638478|gb|ACA59984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 417

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   L D EL   NI+++GPTG GKT
Sbjct: 61  PREIKDYLDQYVIGQEYAKKILAVAVYNHYKRINLGGKLEDVELQKSNIVMLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 LLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 173 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232

Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313
           +T +ILFI  GAF          V++                         P DLL    
Sbjct: 233 DTTNILFICGGAFEGIDKIIQSRVAKKTMGFGAELTLKRDRKLGDILRNILPQDLLKYGL 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  LN+ D   IL +  + L+ QY++L + +G+ L+F E+++ A+A+
Sbjct: 293 IPEFVGRLPVIVTLDPLNQEDLVRILVEPRNALVKQYEKLFEIDGVALEFQEEALQAIAE 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 353 EAIRRNT-----GARGLRAILEEIMLNVMY 377


>gi|221194753|ref|ZP_03567810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
 gi|221185657|gb|EEE18047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
          Length = 435

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR      +    D   E+   NILL+GP
Sbjct: 78  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPAEGDEDVEIAKSNILLLGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 186



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S                I
Sbjct: 196 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTEASVPPTGGRKHPQQELIHI 255

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312
           +T +ILFI  GAF                    HV+               P DL     
Sbjct: 256 DTTNILFICGGAFVGLDKIIADRIGKKGIGFNSHVAERFDQGESDLIAKVMPQDLHKFGM 315

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV    + L + D   ILT+ ++ L+ QY+ + + EG+ L+FT++++  ++ 
Sbjct: 316 IPELLGRIPVITSTRELGEDDLVSILTEPKNALVKQYRRMFELEGVDLEFTDEALREISR 375

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L+ + E  L++  F   SDL    VV+  E V
Sbjct: 376 KALERGT-----GARGLRAICESTLQETMFDLPSDLDITRVVVTPESV 418


>gi|325280714|ref|YP_004253256.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter
           splanchnicus DSM 20712]
 gi|324312523|gb|ADY33076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter
           splanchnicus DSM 20712]
          Length = 404

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 170 GIVFIDELDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 229

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 230 NTKNILFICGGAFDGIEKKIAARMNTMVVGFNASQNTEKIDRENFLQYIAPQDLKSFGLI 289

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L+ L+++  R ILT+ ++ +I QY +L + +GI L F ED  + + D 
Sbjct: 290 PEIIGRLPVLTYLEPLDRAALRNILTEPKNAIIRQYIKLFELDGITLKFDEDVYEYIVDK 349

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E ++ D+ F      +K + I   Y
Sbjct: 350 AIEFR-----LGARGLRSICEAIMTDLMFEVPSQGKKNITITKAY 389



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ +AK+ +A+A+ N ++R    A   + E+   NI++VG TG GKT
Sbjct: 58  PIEIKAFLDQYVIGQDEAKKHLAVAVYNHYKRLLHKAGNDEVEIEKSNIVMVGRTGTGKT 117

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  A
Sbjct: 118 LLARTIAKMLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAA 160


>gi|168335353|ref|ZP_02693448.1| ATP-dependent protease ATP-binding subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 420

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           N +P+ I  +LD Y+IGQ DAK+A+A+A+ N ++R     D  D  EL   NILL+GPTG
Sbjct: 61  NLTPKMIKEKLDDYVIGQADAKKALAVAVYNHYKRINNVIDKNDGVELQKSNILLLGPTG 120

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +V  I+  LV  A
Sbjct: 121 SGKTFLAQTLAKMLNVPFAIADATTLTEAGYVGEDVXNILLKLVQAA 167



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 60/227 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPHQEFLQL 236

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           +T +ILFI  GAF                      VS+             P DLL    
Sbjct: 237 DTTNILFICGGAFDGIDKIIEKRTGEKTIGFGATVVSKKEKSIGELLKKLEPQDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P  V L++L++   R ILT+ ++ +I QY +L K + + L+FT +++  +A 
Sbjct: 297 IPEFVGRVPAIVTLENLDEEALRRILTEPKNAIIKQYAKLFKFDDVKLEFTIEALAKVAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
           +A++  +     GAR L++++E V+ DI F   S SD  +K ++ +A
Sbjct: 357 LAIDRQT-----GARGLRSILENVMRDIMFEIPSMSDTLDKVIISEA 398


>gi|238026974|ref|YP_002911205.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           glumae BGR1]
 gi|237876168|gb|ACR28501.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae
           BGR1]
          Length = 423

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDSGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELELRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397


>gi|167628598|ref|YP_001679097.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Heliobacterium modesticaldum Ice1]
 gi|238687890|sp|B0TFI7|CLPX_HELMI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167591338|gb|ABZ83086.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Heliobacterium modesticaldum Ice1]
          Length = 420

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+A+++A+ N ++R  L + + D EL   NI+++GPTG GKT
Sbjct: 65  PKEIREILDQYVIGQEQAKKALSVAVYNHYKRINLGSKIDDIELQKSNIIMLGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 236

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       ++R                            P DLL    
Sbjct: 237 DTTNILFICGGAFDGIEKLIMNRIGKKTMGFNADIKGKQEKKIGETLREILPVDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT+ ++ L+ QY++  + + + L+FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIVTLDALDEDALVRILTEPKNALVKQYQKFFELDQVQLEFTDDALRAIAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E V+ D+ +
Sbjct: 357 EAIKRNT-----GARGLRAILEEVMLDVMY 381


>gi|121534155|ref|ZP_01665980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
           carboxydivorans Nor1]
 gi|121307258|gb|EAX48175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
           carboxydivorans Nor1]
          Length = 420

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ++AK+ +A+A+ N ++R  L + + D EL   NI+++GPTG GKT
Sbjct: 64  PKEIKEILDQYVIGQEEAKKTLAVAVYNHYKRINLGSKMEDVELQKSNIVMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           +T +ILFI  GAF                       SR             P DLL    
Sbjct: 236 DTTNILFICGGAFDGIDKIISARTGKKTLGFGADIKSREKKQVGEILRQILPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     IL + ++ L+ QY++ ++ + + L+F ED++ A+A 
Sbjct: 296 IPEFVGRLPVIVTLDALDEDALVRILVEPKNALVKQYQKFLELDNVQLEFKEDALRAIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E ++ ++ +      + T  I  + V L+
Sbjct: 356 EALKRNT-----GARGLRAIIENLMRNVMYEVPSRTDVTKCIVTKEVVLN 400


>gi|116327863|ref|YP_797583.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330747|ref|YP_800465.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281499|sp|Q04TR3|CLPX_LEPBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122284343|sp|Q052U5|CLPX_LEPBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116120607|gb|ABJ78650.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124436|gb|ABJ75707.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 420

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I S LD+Y+IGQ  AK+A+++A+ N ++R  L     D E+   NILL+GPTG GK
Sbjct: 68  NPVDIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N ++++
Sbjct: 128 TLLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNAENDIKKA 178



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 117/252 (46%), Gaps = 68/252 (26%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVE 280
           D++ +    IQ  EN       GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 159 DVENIILKLIQNAENDIKKAEIGIIYIDEVDKIARKSDSASITRDVSGEGVQQALLKIIE 218

Query: 281 GSSVST-----------KYGSINTDHILFIASGAFH------VSR--------------- 308
           G+  +            +Y  ++T +ILFI  GAF        SR               
Sbjct: 219 GTIANVPPQGGRKHPHQEYLQVDTKNILFILGGAFVDLPNIIKSRTGVKTIGFGSEEQRI 278

Query: 309 -------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                        P DL+     PE  GR P+   L+ LN    + I  + +++++ QY 
Sbjct: 279 QAENKDTLMEQVIPEDLIKFGLIPEFIGRLPIVATLQELNVDMLKQIFREPKNSVLKQYT 338

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407
            L++ E + L F ED+ID +A++A+   S     GAR L+ ++E ++ D+ F   S  D+
Sbjct: 339 RLLELENVKLTFHEDAIDKIAELAIKRES-----GARGLRAIVENIMLDLMFDIPSRKDI 393

Query: 408 QEKTVVIDAEYV 419
           +E  V+I AE +
Sbjct: 394 EE--VIITAEVI 403


>gi|90961621|ref|YP_535537.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           salivarius UCC118]
 gi|227890708|ref|ZP_04008513.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|122449131|sp|Q1WU81|CLPX_LACS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|90820815|gb|ABD99454.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
 gi|227867646|gb|EEJ75067.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 408

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R    L  D   EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236

Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313
           +T +ILFI  GAF                                     P DLL     
Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + + L F +D++  +A +
Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLKFEDDAVKEIAHL 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E  + DI F
Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMF 380


>gi|296110626|ref|YP_003621007.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832157|gb|ADG40038.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 416

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R  +        EL   NI L+GPTG G
Sbjct: 64  TPHEIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSA 168



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 60/214 (28%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
           ++GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 176 SHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELI 235

Query: 290 SINTDHILFIASGAF------------------------------------HVSRPAD-- 311
            ++T +ILFI  GAF                                    HV +P D  
Sbjct: 236 QVDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAAALNSENILAHV-QPEDMT 294

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + ++L+F  D+++
Sbjct: 295 KFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTTLLGLDDVVLEFQPDALE 354

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A++A+  ++     GAR L++++E  ++D+ F
Sbjct: 355 AMAELAIKRHT-----GARGLRSIIELAMKDVMF 383


>gi|291288694|ref|YP_003505510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885854|gb|ADD69554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 415

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           FN  +P EI ++LD Y+IGQQ AK+ +++A+ N ++R         EL   NILL+GPTG
Sbjct: 58  FNLLTPAEIKAKLDEYVIGQQAAKKILSVAVHNHYKRVLHGKKSEVELEKSNILLLGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 118 TGKTLLARTLARILNVPFAIADATTLTEAGYVGEDVENVVLKLLQNA 164



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 59/213 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+F+DE DKI  R     I   VS EGVQ+ LL ++EG+  +             Y  +
Sbjct: 174 GIIFIDEIDKISKRGDSPSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPQQDYIQV 233

Query: 292 NTDHILFIASGAF----------------------------HVSR--------PADL--- 312
           +T +ILFI  GAF                             ++R        P DL   
Sbjct: 234 DTSNILFIVGGAFDYLDEVIKKRVGKKSLGFSSATEEETKSELNRFELLCELQPTDLVKY 293

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ L++     IL + +++L+ QY+++ K + + L FT  ++ ++
Sbjct: 294 GLIPEFVGRLPVAAALEDLDEEALVRILQEPKNSLLRQYEQMFKFDDVKLTFTNSALKSV 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           A  A+N  +     GAR L++++E  + D+ +S
Sbjct: 354 AKKALNRKT-----GARGLRSILEESMMDVMYS 381


>gi|63079330|gb|AAY29673.1| predicted ATP-dependent specificity component of the Clp protease
           [Bifidobacterium breve UCC2003]
          Length = 453

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 116/251 (46%), Gaps = 66/251 (26%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278
           D++TV +  +Q  +       +GI+++DE DKI AR SG    ++R    EGVQ+ LL +
Sbjct: 185 DVETVLQRLLQAADGDVSRAQHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 243

Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------H 305
           +EG+  S                ++T  ILFI  GAF                      H
Sbjct: 244 LEGTIASVPLEGTRKHKEQDTVQMDTCGILFICGGAFVGLTDIVRKRLGRRETGFGANWH 303

Query: 306 VSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            +   D                LLPE  GR PV   LK L   D   ILT   + LI QY
Sbjct: 304 DADLKDEELLKQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTEILTQPANALIKQY 363

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   +G+ L+FT+ ++ A+AD A+        IGAR L++++ER L+D  F    L++
Sbjct: 364 RKLFAVDGVDLEFTDQAVQAIADTAIKQG-----IGARGLRSIIERTLQDTMFQLPSLED 418

Query: 410 -KTVVIDAEYV 419
            K VV+D   V
Sbjct: 419 VKQVVVDKASV 429



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 31/133 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                            
Sbjct: 65  PTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNAALQSAGRAR 124

Query: 41  --QQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
             Q+    L D E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  TE GYVG 
Sbjct: 125 KSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGD 184

Query: 98  NVEQIIRDLVDVA 110
           +VE +++ L+  A
Sbjct: 185 DVETVLQRLLQAA 197


>gi|242373966|ref|ZP_04819540.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348320|gb|EES39922.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 420

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P++   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FT++++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDIAALKNILTQPKNALVKQYTKMLELDNVELEFTDEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|83949689|ref|ZP_00958422.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
 gi|83837588|gb|EAP76884.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
          Length = 421

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSGKSGDIELQKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEVFKELEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + EG  L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQYQRLFELEGAQLSFTDDALKAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L++++E +L +  F    L
Sbjct: 358 RAIQRKT-----GARGLRSILEDILLNTMFELPGL 387


>gi|89900347|ref|YP_522818.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
 gi|122479496|sp|Q21Y66|CLPX_RHOFD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89345084|gb|ABD69287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
          Length = 421

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   Q  A   D EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRTLAVAVYNHYKRLRHQEKAKKDDVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I+  L+      V  ++R
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCNYEVERAQR 181



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFSGLEKVIDNRTQSSGMGFGATVKSKEQRSLTEVFKEVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVLATLAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPSALKAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386


>gi|121997403|ref|YP_001002190.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira
           halophila SL1]
 gi|167009016|sp|A1WUM6|CLPX_HALHL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121588808|gb|ABM61388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halorhodospira halophila SL1]
          Length = 426

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI  ELD+Y+IGQ+ AK+ +++A+ N ++R +      D EL   NILL+GPTG GKT
Sbjct: 69  PHEINRELDQYVIGQEHAKKVLSVAVYNHYKRLESRTSQDDVELTKSNILLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DK+  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 179 QHGIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPQQEFV 238

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T ++LFI  GAF                                       P+DL  
Sbjct: 239 QVDTSNMLFICGGAFAGLDKVIQERSERGGIGFSAEIKGEGERASVGETLQTVEPSDLVR 298

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L  L++     IL + ++ L+ QY++L + EG+ LD  +D++ A
Sbjct: 299 YGLIPEFVGRLPVIATLNELDQEALVQILREPKNALVKQYQKLFEMEGVELDLRDDALRA 358

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +AD A+   +     GAR L+T++E+VL +  +    ++  + V+  E V
Sbjct: 359 VADKAMERKT-----GARGLRTIIEQVLLETMYELPSMENVSKVVVDESV 403


>gi|300214432|gb|ADJ78848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           salivarius CECT 5713]
          Length = 408

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R    L  D   EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236

Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313
           +T +ILFI  GAF                                     P DLL     
Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + + L F +D++  +A +
Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLRFEDDAVKEIAHL 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+  N+     GAR L++++E  + DI F   S+   K VVI  + V
Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMFDIPSEDNIKEVVITKDTV 398


>gi|257093850|ref|YP_003167491.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046374|gb|ACV35562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 423

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ  AKR +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPKEISALLDQYVIGQDQAKRILSVAVYNHYKRLRHHGRAGDDIELAKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+  A
Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKA 170



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 66/241 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQDFVQV 239

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313
           +T +ILFI  GAF                                 V R   P DL+   
Sbjct: 240 DTTNILFICGGAFDGLEKVIRNRSDRGGIGFGAEVKSKDNSKAIGEVLRGVEPEDLIKFG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L+ +    IL + ++ L+ QY++L   EG+ L+  + ++ A+A
Sbjct: 300 LIPELIGRLPVIATLEELSAAALVQILIEPKNALVKQYQKLFGMEGVALEIRQAAMLAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--------EKTVVIDAEYVRLHI 423
             A+   +     GAR L++++E VL D  +    ++        E  ++ DA+ + ++ 
Sbjct: 360 RKALERKT-----GARGLRSILESVLLDTMYELPGMENVSEVIIDENVIIGDAQPLLIYA 414

Query: 424 G 424
           G
Sbjct: 415 G 415


>gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
 gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
          Length = 422

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           SP++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  SPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 65/238 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDDRGVGEIFQDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT +++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTLPKNALVKQYQRLFELEETELDFTPEALKAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLH 422
            A+   +     GAR L+++ME +L D  F    +         E+ V  DA+ + +H
Sbjct: 359 KAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIH 411


>gi|254294161|ref|YP_003060184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
 gi|254042692|gb|ACT59487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +A+A+ N ++R    +   +E  L   NILLVGPTG G
Sbjct: 66  TPQEICDVLDDYVIGQAQAKRVLAVAVHNHYKRLSHASKNGNEVELAKSNILLVGPTGCG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 126 KTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 179



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T ++LFI  GAF                     VS P D                   L
Sbjct: 240 DTTNMLFICGGAFAGLDKVISDRGQGSSIGFGATVSDPDDRRVGAVLQDCEPEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+     +ILT  ++ L+ QY+ L   E + L F++D++  +A+
Sbjct: 300 IPEFIGRLPVIATLEDLDTDSLVMILTQPKNALLKQYQRLFDMENVQLTFSDDALTGVAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F   +L+  + VVI+AE V
Sbjct: 360 KAIQRRT-----GARGLRSILEGILLDTMFELPNLRGIEEVVINAEVV 402


>gi|257784420|ref|YP_003179637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           parvulum DSM 20469]
 gi|257472927|gb|ACV51046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           parvulum DSM 20469]
          Length = 432

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR       P + ++  E+   NILL+GP
Sbjct: 78  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPQEGKEDVEIAKSNILLLGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 186



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V    G          I
Sbjct: 196 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVANVPPTGGRKHPQQELIHI 255

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312
           +T +ILFI  GAF                     V++              P DL     
Sbjct: 256 DTTNILFICGGAFVGLDKIVADRIGKKGIGFNSDVAKNVKEDESELIAKVMPQDLHKFGM 315

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV    + L + D   ILTD ++ L  QY+ + + EG+ L+FTEDS+  +A 
Sbjct: 316 IPELLGRIPVITSTRELGEEDLMSILTDPKNALTKQYRRMFELEGVDLEFTEDSLREIAK 375

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L+ + E  L++I F   SDL    VV+  E V
Sbjct: 376 KALARGT-----GARGLRAICESTLQEIMFDLPSDLDITKVVVTPESV 418


>gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris CGA009]
 gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris TIE-1]
 gi|61211520|sp|Q6N5L4|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229484081|sp|B3Q7P4|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX
           [Rhodopseudomonas palustris CGA009]
 gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris TIE-1]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFAGLEKIISSRGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E + L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
 gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
          Length = 421

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEIFKELEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTSPKNALVKQYQRLFELEDAELAFTDDALKAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTEVVVNEEAV 401


>gi|154494363|ref|ZP_02033683.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC
           43184]
 gi|154085807|gb|EDN84852.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC
           43184]
          Length = 390

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 155 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 214

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 215 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYAANENTAQVDRNNLLKYITPTDLKSFGLI 274

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++S  R ILT+ ++++I QY +L   + I L F ED  + + D 
Sbjct: 275 PEIIGRLPILTYLNPLDRSTLRNILTEPKNSIIKQYIKLFAMDDIELTFDEDVFEFIVDK 334

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S     EKT+ +  EY +
Sbjct: 335 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSANEKTLHVTLEYAK 376



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++A+ N ++R  Q++ +D   E+   NI++VG TG GK
Sbjct: 43  PEDIKTFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSD-DVEIEKSNIIMVGATGTGK 101

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 102 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 154


>gi|301299297|ref|ZP_07205583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853141|gb|EFK80739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 408

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R    L  D   EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236

Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313
           +T +ILFI  GAF                                     P DLL     
Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + ++L F +D++  +A +
Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVLLKFEDDAVKEIAHL 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E  + DI F
Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMF 380


>gi|86749682|ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris HaA2]
 gi|123292611|sp|Q2IWZ3|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86572710|gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris HaA2]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|323451888|gb|EGB07764.1| hypothetical protein AURANDRAFT_27171 [Aureococcus anophagefferens]
          Length = 372

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 4/110 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW---RRQQLPADLRD-ELMPKNILLVG 60
           F+  PR++   LDRY++ Q DAK+ +++A+ + +   RR    A  R  E    NILL+G
Sbjct: 28  FDLRPRQVREHLDRYVVRQDDAKKVLSVAICDHYNVVRRCLSDASERAAEYSKPNILLLG 87

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+G GKT I R LA+L G PF+K + TKFTE G VG + E ++R+LV+ A
Sbjct: 88  PSGSGKTYIMRTLAKLLGVPFVKADATKFTETGIVGEDAEDLVRNLVEQA 137



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 104/285 (36%), Gaps = 88/285 (30%)

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN-------------YGIV 247
           GSG+   +R   +      ++ ++ +  +   V  D+  +V N             YGI+
Sbjct: 90  GSGKTYIMRTLAKLLGVPFVKADATKFTETGIVGEDAEDLVRNLVEQADGDVELAQYGII 149

Query: 248 FLDEFDKIVARDSGNGIGVSREG---------VQRDLLPLVEGSSVSTKYGS-------- 290
           ++DE DK+   + G        G         VQ   L ++E + +S    S        
Sbjct: 150 YVDEVDKLCRGEQGGTSTTGAGGATVGGGARGVQSTFLKVMEETEISVNKQSGMIPEIFL 209

Query: 291 ---------INTDHILFIASGAF----------HVSRP---------------------- 309
                    ++T H+LFI SGAF          H  R                       
Sbjct: 210 GGKPAQPARVSTKHVLFIFSGAFTGLDERLKRKHEQRSMGFGLEAAGGDDGLTDDGVPKS 269

Query: 310 ------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                       A L  E  GR PVRV +  L   D  LIL  +E +++ QY+      G
Sbjct: 270 FLKKATSSDFVDAGLETEFIGRIPVRVAVDPLGARDLELILLQSEGSVLRQYERDFAGYG 329

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L+ T D+I A+A  A    +     GAR L TV+ER   D  +
Sbjct: 330 VDLEVTRDAIAAVAAEAAEEKT-----GARGLVTVLERTFRDFKY 369


>gi|53719040|ref|YP_108026.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei K96243]
 gi|52209454|emb|CAH35405.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           pseudomallei K96243]
          Length = 430

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 75  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 133

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 134 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 187



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 188 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 247

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 248 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 307

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 308 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 368 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 404


>gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
 gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFSGLEKIISSRGRTTSIGFAASVLAPEDRRTGEIFREVEPEDLLKYGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E I L F ++++ A+A 
Sbjct: 298 IPEFVGRLPVVATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|224283327|ref|ZP_03646649.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140479|ref|ZP_07802672.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132989|gb|EFR50606.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 437

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 60/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254

Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311
             +I+T  ILFI  GAF                        H  +P +            
Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   L  L ++D   ILT+ ++ L+ QY+++   +G+ L FTE +++A
Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLAFTEQAVNA 374

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A  A+   +     GAR L++++E+ LE+  F    + + + V++DA  VR
Sbjct: 375 IASTAITRGT-----GARGLRSIIEKTLEETMFELPGMDDVQQVIVDAASVR 421



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 26/126 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49
           P EI + LDRY+IGQ  AKR +++A+ N ++R  +  +LR+                   
Sbjct: 65  PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNM--ELRESAGQFDGKKQALGRRRRTD 122

Query: 50  -----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
                E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++
Sbjct: 123 PLADVEVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182

Query: 105 DLVDVA 110
            L+  A
Sbjct: 183 RLISAA 188


>gi|330817270|ref|YP_004360975.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
 gi|327369663|gb|AEA61019.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQERDSGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELELRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397


>gi|146328686|ref|YP_001209153.1| ATP-dependent protease ATP-binding subunit ClpX [Dichelobacter
           nodosus VCS1703A]
 gi|146232156|gb|ABQ13134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dichelobacter
           nodosus VCS1703A]
          Length = 425

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 4/116 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P+EI S LDRYIIGQ  AK+++A+A+ N ++R +L  +  D    E+   NIL++G TG
Sbjct: 70  TPQEIKSFLDRYIIGQDQAKKSLAVAVYNHYKRLRLNQNAEDDDGIEIAKSNILMIGSTG 129

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA+    PF   + T  TE GYVG +VE II+ L+    N V ++ R
Sbjct: 130 SGKTLLAQTLAKCLNVPFAIADATALTEAGYVGDDVETIIQKLLMNCDNDVTQAER 185



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 66/234 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-SVSTKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+ +    +G           +
Sbjct: 186 GIIYIDEIDKIARKGDSASITRDVSGEGVQQALLKLVEGTIAAVPPHGGRKHPQQEMTHV 245

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFI  GAF                                         P DL  
Sbjct: 246 DTRNILFICGGAFDGLEKIIAKRTDKGSIGFNAAVRGKNSLVEGAEAQLLKQVEPEDLVK 305

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR P+   L +L++S    ILT+ ++ ++ Q+ ++   E + L+F + ++ A
Sbjct: 306 FGLIPEFVGRLPIVTLLDTLDESALVRILTEPKNAIVRQFSKIFSYEQVDLEFEDAALTA 365

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYV 419
           +A  A+   +     GAR L++++E++L D  F    +++D+++  +VI AE V
Sbjct: 366 IAQKAIARKT-----GARGLRSIVEQLLLDTMFELPTTSTDVEK--IVISAENV 412


>gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           BTAi1]
 gi|166214758|sp|A5EKA7|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
           sp. BTAi1]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|291278626|ref|YP_003495461.1| ATP-dependent Clp protease ATP-binding subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753328|dbj|BAI79705.1| ATP-dependent Clp protease, ATP-binding subunit [Deferribacter
           desulfuricans SSM1]
          Length = 410

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 64/102 (62%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI ++LD Y+IGQ DAKR +++A+ N ++R         E+   NIL++GPTG GKT 
Sbjct: 60  PAEIKAKLDEYVIGQDDAKRVLSVAVYNHYKRILFGKKTDVEIEKSNILMIGPTGTGKTL 119

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++R LA++   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 120 LARTLAKILNVPFAIADATTLTEAGYVGEDVENVVLKLIQAA 161



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 171 GIIFIDEIDKISRKTDSPSITRDVSGEGVQQALLKIIEGTVANIPPQGGRKHPHQEYLQI 230

Query: 292 NTDHILFIASGAF--------------------------HVSR--------PADLL---- 313
           +T +ILFI  GAF                           +SR        P DL+    
Sbjct: 231 DTTNILFICGGAFAGLEEVIKRRIGKKSLGFNSEIENQNKLSRDEILRQVQPEDLIKYGL 290

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT+ +++L+ Q++E+ K + + L FT+ ++ A+A 
Sbjct: 291 IPEFVGRLPVIATLHDLDEEALIKILTEPKNSLVKQFQEIFKLDNVKLTFTQGALRAIAK 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E  + D+ +
Sbjct: 351 KAIARKT-----GARGLRSIVEEAMLDLMY 375


>gi|255690573|ref|ZP_05414248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           finegoldii DSM 17565]
 gi|260624035|gb|EEX46906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           finegoldii DSM 17565]
          Length = 414

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDRNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEKSVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D+ F      +KT  +  EY +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKTYEVTLEYAK 400



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
 gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 73  LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 176



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI++LDE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 185 HGIIYLDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 244

Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312
           I+T +ILFI  GAF                            +V R      P DL    
Sbjct: 245 IDTTNILFICGGAFEGLDKIIETRMDRKSMGFNAEVGNHHEDNVDRLLSQVLPQDLVKFG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L+F +++++ +A
Sbjct: 305 LIPELVGRVPVNVTLEMLDRDALIRILTEPKSAIVKQYQKLLELDGVELEFDKEALEKIA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
           D ++   +     GAR L+ +ME V+ D  +   S+ + KT  I  E V
Sbjct: 365 DTSLARKT-----GARGLRAIMENVMMDTMYHVPSNDRIKTCRITKEAV 408


>gi|158521239|ref|YP_001529109.1| ATPase [Desulfococcus oleovorans Hxd3]
 gi|158510065|gb|ABW67032.1| ATPase AAA-2 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 597

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 5/113 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDEL--MPKNILLV 59
           F+  P E+++ LD+YII Q  AK+ +A  +    NR R Q L    R+ +  +  N+L++
Sbjct: 58  FDLKPEEMIAYLDQYIIRQDQAKKVLATKICTHFNRVRHQALWNRTRNMVGGIKNNVLMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           GPTGVGKT + R +A+  G PF+K + TKF+E GYVG +VE ++RDLV  A N
Sbjct: 118 GPTGVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADN 170



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 78/270 (28%)

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI-------DMDTVHRDSIQMVEN------YGIV 247
           G G+   IR+  +K     ++ ++ +         D++ + RD ++  +N      +GI+
Sbjct: 121 GVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADNDIERAQFGII 180

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------------ 289
           ++DE DKI +     G  VSR GVQR LL L+E + V  K                    
Sbjct: 181 YIDEIDKIASSRGLMGPDVSRSGVQRALLTLMEETEVEMKVPHDPVSVMQEVEQFRKTGK 240

Query: 290 ----SINTDHILFIASGAFH--------------------VSRPAD-------------- 311
               ++NT +ILFI SGAF+                    +  P+D              
Sbjct: 241 REKRTVNTRNILFIMSGAFNGLQEIIGKRLSRQAIGFGAKIQDPSDDPWEIMQHVRSEDL 300

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                  E  GR PVR   +SL ++D   IL +  + ++L  K       I + F + ++
Sbjct: 301 TEFGFEAEFVGRLPVRAVFESLTEADLFAILKNPSNPIVLSKKMDFAAYDIDVKFADAAL 360

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVL 397
             LA      N+     GAR L   +ER L
Sbjct: 361 AGLAK-----NAFQEKTGARGLVNAVERAL 385


>gi|332528100|ref|ZP_08404131.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax
           benzoatilyticus JA2]
 gi|332112671|gb|EGJ12464.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax
           benzoatilyticus JA2]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE--LMPKNILLVGPTGVG 65
           P EI + LD+Y+IGQ  AKR +++A+ N ++R + + A  +DE  L   NILL+GPTG G
Sbjct: 69  PSEIKTSLDQYVIGQDVAKRTLSVAVYNHYKRLKHMGAGGKDEVELTKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LA+L   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 KTLLAQTLAKLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 170



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          I
Sbjct: 183 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 242

Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 243 DTTNILFICGGAFDGLEKVIQGRTEKSGIGFGATVHSKSEKRVSDLFREVEPEDLIKFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY++L   +G+ L+    ++ A+A 
Sbjct: 303 IPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFGMDGVELEIRPSALSAIAR 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L+++ME  L D  F    L     V+  E++
Sbjct: 363 KALARKT-----GARGLRSIMEHALIDTMFDLPTLDGVAKVVIDEHI 404


>gi|307822659|ref|ZP_07652890.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
 gi|307736263|gb|EFO07109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI  ELD Y+IGQ++AK+ +A+A+ N ++R +  +  +D  EL   NILL+GPTG GK
Sbjct: 68  PKEIKEELDSYVIGQENAKKILAVAVYNHYKRLRSKSK-KDTVELAKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ ++
Sbjct: 127 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKIL 167



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 96/206 (46%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311
           NT +ILFI  GAF               +   A+                          
Sbjct: 240 NTANILFIVGGAFAGLDRVIKDRSEKGGIGFSAEIKTKDESKNIGQLFAEVEAEDLIKYG 299

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT+ ++ LI QYK L + EG  L+F +DS+ A+A
Sbjct: 300 LIPEFVGRLPVIATLEELDEKALVQILTEPKNALIKQYKHLFEMEGAELEFRDDSLTAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+   +     GAR L+T++E VL
Sbjct: 360 RKAMERKT-----GARGLRTIVENVL 380


>gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
 gi|225206815|gb|EEG89169.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
          Length = 416

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL+VGPTG GK
Sbjct: 63  LKPEEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMVGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 123 TFLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 166



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 175 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEMIQ 234

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             + R      P DL    
Sbjct: 235 IDTTNILFICGGAFEGIDKIIENRIDKKSIGFEAQIAQRHEEDIDRLLQQILPQDLVKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L+K D   ILT+ ++ ++ QY++L++ + + L+F +++++A+A
Sbjct: 295 LIPELVGRVPVTVSLELLDKEDLIRILTEPKNAIVKQYQKLLELDDVELEFDKEALEAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
           + ++   +     GAR L+ +ME V+ DI + A SD   K  ++  E V
Sbjct: 355 ETSLKRKT-----GARGLRAIMENVMMDIMYKAPSDENLKYCLVTKEAV 398


>gi|53723666|ref|YP_103111.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|67642017|ref|ZP_00440780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|121600417|ref|YP_993273.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124383380|ref|YP_001029283.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126448291|ref|YP_001080783.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|166998704|ref|ZP_02264558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
 gi|254177862|ref|ZP_04884517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|254200062|ref|ZP_04906428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|254206397|ref|ZP_04912749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|254358193|ref|ZP_04974466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|61211429|sp|Q62JK8|CLPX_BURMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214762|sp|A3MKJ7|CLPX_BURM7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214763|sp|A2SBG4|CLPX_BURM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214764|sp|A1V4X0|CLPX_BURMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52427089|gb|AAU47682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|121229227|gb|ABM51745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124291400|gb|ABN00669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126241161|gb|ABO04254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|147749658|gb|EDK56732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|147753840|gb|EDK60905.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|148027320|gb|EDK85341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|160698901|gb|EDP88871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|238523065|gb|EEP86506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|243065059|gb|EES47245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397


>gi|94310822|ref|YP_584032.1| ATP-dependent protease ATP-binding subunit ClpX [Cupriavidus
           metallidurans CH34]
 gi|166214808|sp|Q1LM63|CLPX_RALME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93354674|gb|ABF08763.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus metallidurans CH34]
          Length = 425

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQDQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELIGRLPVVATLAKLDEAALMQILIEPKNALVKQYQKLLAMEGVELEIRPAALSAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E+ L D+ +   + +  + VVID
Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVID 400


>gi|255038318|ref|YP_003088939.1| Sigma 54 interacting domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951074|gb|ACT95774.1| Sigma 54 interacting domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 414

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  S+
Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQKMISL 235

Query: 292 NTDHILFIASGAF-----HV-----SRPAD-----------------------------L 312
           NT++ILFI  GAF     H+     +RP                               L
Sbjct: 236 NTENILFICGGAFDGIERHIGKRINTRPIGFNGDNRIIEIFDKGNLMRYVTAMDLKSFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  HL  L++   R ILT+ ++ L+ QY +L   EGI L F +  +D + D
Sbjct: 296 IPELIGRLPVLTHLNPLDRETLRRILTEPKNALVRQYSKLFAMEGITLHFEDAVLDYIVD 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
            A+     +  +GAR L+ + E ++ D  F   S  +++E T+ +D
Sbjct: 356 QAM-----IYKLGARGLRAICESIMTDAMFDLPSQKEVKEFTLSLD 396



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67
           P EI   L++Y+IGQ +AKR++A+A+ N ++R    A   D ++ K NI++VG TG GKT
Sbjct: 64  PAEIKHFLEQYVIGQDEAKRSLAVAVYNHYKRLNQAATEDDVVIEKSNIIMVGETGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAKSIARILQVPFCVADATVVTEAGYVGEDVETILTRLLQAA 166


>gi|126733144|ref|ZP_01748891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. CCS2]
 gi|126716010|gb|EBA12874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. CCS2]
          Length = 421

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPSEICGVLDDYVIGQMHAKRVLSVAVHNHYKRLNHAEKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVREDDDRGIGEIFTDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L   E   L FTED++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFDLEDTKLTFTEDALAAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFDLPGMDTVTEVVVNEEAV 399


>gi|187923897|ref|YP_001895539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|296157828|ref|ZP_06840662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
 gi|238689607|sp|B2T404|CLPX_BURPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187715091|gb|ACD16315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|295892074|gb|EFG71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397


>gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium
           japonicum USDA 110]
 gi|46576546|sp|Q89KG2|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFGAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILEAILLETMFDLPGLEGVEEVVISREVV 400


>gi|303229430|ref|ZP_07316220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515966|gb|EFL57918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 417

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNMVDDVELQKSNVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRAEERDVSAILKEVVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L F +D+++ +AD
Sbjct: 295 IPEFIGRLPVMVTLDLLDRDALVQILTKPKNALTKQYEKILSLDGVELTFEDDALEEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ ++E+V++ + +    +
Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKYVMYEVPSM 384


>gi|89055298|ref|YP_510749.1| ATP-dependent protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
 gi|122498234|sp|Q28NI8|CLPX_JANSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88864847|gb|ABD55724.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
          Length = 421

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPQEICGVLDDYVIGQAHAKRVLSVAVHNHYKRLNHSDKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDPDSKSVGEYFKDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + L FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILTGPKNALVKQYQRLFELEDVKLTFTDDAMSAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+++ME +L D  F
Sbjct: 357 RAI-LRKT----GARGLRSIMEDILLDTMF 381


>gi|256420339|ref|YP_003120992.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256035247|gb|ACU58791.1| Sigma 54 interacting domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 411

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+               K   +
Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTEALVPPQGGRKHPEQKLIKV 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD--------LL 313
           NT +ILFI  GAF                              H+ R  +        L+
Sbjct: 236 NTQNILFICGGAFDGVDKIISRRVQTHSIGFTVNTDREEENKKHILRYINSQDLKAFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L SL+    + ILT+ ++ L+ QYK+L K EGI L   +D++D + + 
Sbjct: 296 PELLGRLPVVTYLNSLDHEALKAILTEPKNALVKQYKKLFKVEGIELVIEDDAVDYIVEK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E VL D  F+     E T V+   Y
Sbjct: 356 AMEYK-----LGARGLRSICEVVLSDAMFNLPSSSESTFVLTRAY 395



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ DAK+ +A+A+ N ++R  Q   D   E+   NI++VG TG GKT
Sbjct: 64  PVEIKKFLDEYVIGQDDAKKILAVAVYNHYKRLNQQVGDDDVEIEKSNIIMVGETGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ V 
Sbjct: 124 LLAKSIARLLNVPFTIVDATVFTEAGYVGEDVESILTRLLQVC 166


>gi|154497946|ref|ZP_02036324.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC
           29799]
 gi|150272936|gb|EDN00093.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC
           29799]
          Length = 438

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 65/103 (63%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD+YIIGQ+DAK A+++A+ N ++R         EL   NILLVGPTG GKT
Sbjct: 65  TPREIREVLDQYIIGQEDAKVALSVAVYNHYKRIYFGGGEDVELQKSNILLVGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             ++ LAR+   PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 125 LFAQTLARILKVPFAIADATTLTEAGYVGDDVENILLRLVQAA 167



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 177 GIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                     +P DL+    
Sbjct: 237 NTKNILFICGGAFDGLEKIIEQRQDRKTMGFGAEIKSKKELDRSAVLKDVQPHDLIKFGI 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L++LNK     ILT+ ++ L+ QY++L++ + + L F   +++A AD
Sbjct: 297 IPELVGRLPVVTTLRALNKEQLVQILTEPKNALVKQYEKLLEYDNVALRFEPAALEAAAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422
            A+       +IGAR L+ V+E  +  I +   SD     V I A+ +R H
Sbjct: 357 KAIER-----EIGARGLRAVLEESVTQIMYDVPSDPTITGVTITADTIRDH 402


>gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           ORS278]
 gi|166214759|sp|A4YVM3|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
           sp. ORS278]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F ++++ A++
Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVS 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|288958757|ref|YP_003449098.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288911065|dbj|BAI72554.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 420

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQSYAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  H   P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRSADERATGEILHEVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    IL+  ++ L+ QY+ L + E + L+F+ED++ A+A 
Sbjct: 298 IPEFIGRLPVLATLSDLDEAALVEILSKPKNALVKQYQRLFEMEDVHLEFSEDAMRAIAH 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L   ++++++ E V
Sbjct: 358 KAIARKT-----GARGLRSIMEAILLDPMFDLPGLTGIESILVNKEVV 400


>gi|170692396|ref|ZP_02883559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
 gi|170142826|gb|EDT10991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
          Length = 423

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397


>gi|154482728|ref|ZP_02025176.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
 gi|149736323|gb|EDM52209.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ  AK+ +++A+ N ++R     DL  EL   NILL+GPTG GK
Sbjct: 64  LKPKEIKEFLDQYVIGQDAAKKVLSVAVYNHYKRVLAGKDLDVELQKSNILLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 167



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 235

Query: 291 INTDHILFIASGAFH-----VSR-----------------------------PADL---- 312
           I+T +ILFI  GAF      + R                             P DL    
Sbjct: 236 IDTTNILFICGGAFDGLGKIIERRLDKGSIGFNSQIIEKTDKSEDELFKQVMPEDLTKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L  L++     ILT+ ++ LI QYK+L + +G+ L FT+++I+ +A
Sbjct: 296 LIPEFIGRVPVTVSLDFLDEKALERILTEPKNALIKQYKKLFELDGVELKFTDEAINTIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419
             AV   +     GAR L+ ++E  + DI + + SD   K  +++ + +
Sbjct: 356 KKAVERKT-----GARGLRAILENAVMDIMYETPSDETIKECIVNEDVI 399


>gi|209525240|ref|ZP_03273782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
 gi|209494255|gb|EDZ94568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
          Length = 447

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           PREI + LD Y+IGQ DAK+ +++A+ N ++R       R      EL   NILL+GPTG
Sbjct: 85  PREIKAYLDHYVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNILLIGPTG 144

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 145 CGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 60/213 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G          I
Sbjct: 201 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF-------------------HVSR------------------PADL-- 312
           +T +ILFI  GAF                   H  +                  P DL  
Sbjct: 261 DTSNILFICGGAFVGLEKIIEQRSGKKSMGFVHSGQEVTPDKDKKDAEALKGIEPNDLVK 320

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + + L+F  D+I A
Sbjct: 321 FGLIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDNVHLEFDADAIRA 380

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 IAQEAFRRKT-----GARALRGIVEELMLDVMY 408


>gi|189424986|ref|YP_001952163.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter lovleyi
           SZ]
 gi|238692096|sp|B3E1Z3|CLPX_GEOLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189421245|gb|ACD95643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           lovleyi SZ]
          Length = 419

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ+ AK+ +++A+ N ++R + PA   D E+   NIL++GPTG GKT
Sbjct: 66  PKEIKEFLDEYVIGQETAKKVLSVAVYNHYKRIERPAKPGDVEMQKSNILILGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 126 LLAQTLARMLKVPFAIADATNLTEAGYVGEDVENIILSLLQAA 168



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+  S+  K G          +
Sbjct: 178 GIVYIDEIDKIARKAESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V +              P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDGVIQQRIGKKTLGFGADVKKKLEKKAGELLLQVTPEDLLKYGY 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++     ILT+ ++ L  QY++L   EG+ L FT+ ++ ++A 
Sbjct: 298 IPEFIGRLPMLASLTELDEDALVQILTEPKNALTKQYQKLFDMEGVRLRFTDGALVSIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E  + DI +
Sbjct: 358 EALKRNT-----GARGLRAILEGAMLDIMY 382


>gi|325662429|ref|ZP_08151035.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471263|gb|EGC74487.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 213

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +A+++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167


>gi|188585729|ref|YP_001917274.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229463722|sp|B2A159|CLPX_NATTJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|179350416|gb|ACB84686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 420

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   L+ YIIGQ++AK+A+++A+ N ++R    A  +D  E+   NILL+GPTGVGK
Sbjct: 64  PQEIYEILNDYIIGQEEAKKALSVAVYNHYKRVNNEAKKKDDVEIQKSNILLLGPTGVGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLAKILNVPFAMADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIVYIDEIDKVARKTDNPSITRDVSGEGVQQALLRILEGTKASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DLL    
Sbjct: 237 DTTNILFICGGAFDGIDKIIQNRIGKKGLGFGAEVQSAKDEGIGEILSKVLPQDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L +L++     IL + ++ L+ QY++L + +G+ L+  ED++ A+A 
Sbjct: 297 IPEFVGRIPVISSLDALDEDALVRILVEPKNALVKQYQKLFEIDGVELEMQEDALRAIAR 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+  N+     GAR L+ ++E  L DI +    + +    I  E V
Sbjct: 357 EAIERNT-----GARGLRAIVEEHLNDIMYDLPSMDDVNKCIITEEV 398


>gi|91783521|ref|YP_558727.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans
           LB400]
 gi|123358810|sp|Q13Z14|CLPX_BURXL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91687475|gb|ABE30675.1| ClpX, ATPase regulatory subunit [Burkholderia xenovorans LB400]
          Length = 423

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGISKVI 397


>gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. B100]
 gi|23813857|sp|Q8PBY5|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81304479|sp|Q4URL5|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229485950|sp|B0RTF5|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris]
          Length = 428

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +    +   EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L + E + L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
 gi|254763855|sp|B8EIL3|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
          Length = 421

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISTRGKGTSIGFGATVQAPDDRRTGEIFRKVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E   L F +++++ +A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L   + VVI  + V
Sbjct: 358 KAIERRT-----GARGLRSIMEGILLDTMFDLPGLDSVEQVVIGPDVV 400


>gi|78043800|ref|YP_359189.1| ATP-dependent protease ATP-binding subunit ClpX [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995915|gb|ABB14814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 418

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI + LD+Y+IGQ++AK+ +A+A+ N ++R  L   + D EL   NIL++GPTG GK
Sbjct: 59  KPQEIKAYLDQYVIGQEEAKKVLAVAVYNHYKRINLGGKIDDVELSKSNILMLGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 119 TLLAQTLARFLNVPFAIADATALTEAGYVGEDVENILLKLIQNA 162



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 172 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 231

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 232 DTTNILFIVGGAFEGIEKIIQNRIGKKGLGFGAEIKPKREQNVGEILKHIM-PEDLLKFG 290

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L +L++     ILT+ ++ LI QY++L + +G+ L+F ED++ A+A
Sbjct: 291 LIPEFVGRLPIIVTLDALDEDALVRILTEPKNALIKQYQKLFELDGVTLEFEEDALRAIA 350

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+  N+     GAR L+ ++E V+ D+ +
Sbjct: 351 QKAIKRNT-----GARGLRAILEEVMLDVMY 376


>gi|70726252|ref|YP_253166.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           haemolyticus JCSC1435]
 gi|123660428|sp|Q4L715|CLPX_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|68446976|dbj|BAE04560.1| protease ClpX [Staphylococcus haemolyticus JCSC1435]
          Length = 420

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDNVELEFTEEALAAVSEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +   +     GAR L++++E  L DI +     ++ T V+
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVV 391


>gi|167042803|gb|ABZ07521.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism
           HF4000_ANIW137I15]
          Length = 414

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+E+ + LD +++GQ+ AKR +++A+ N ++R +   DL D E+   N+LL+GPTG GKT
Sbjct: 64  PKEVKATLDEFVVGQELAKRVLSVAIHNHYKRIEANVDLNDVEIQKSNVLLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +AR+   PF  V+ T  TE GYVG +VE II  L+  A   V+ + R
Sbjct: 124 LLAQTMARILDVPFAIVDATTLTEAGYVGEDVENIILKLLQNADYDVQRAER 175



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 176 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFLQV 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T H+ F+  GAF                                     +P DLL    
Sbjct: 236 DTAHVFFVCGGAFTGLDQIIQRRVGSRSMGFEAEIRSRDDMSIGEIFSKVQPEDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV  +L  L++     +L + ++ L+ QYK L + E + L FT++S+ A+A 
Sbjct: 296 IPEFVGRLPVIAYLNELDEEALVQVLCEPKNALVKQYKRLFEFENVALRFTDESLVAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
            A+   +     GAR L++++E ++ D  +   S +D++E  V
Sbjct: 356 EAMKRKT-----GARGLRSILEEIMLDTMYEIPSRADVKECVV 393


>gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
 gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
          Length = 422

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R    A      EL   NI+LVGPTG G
Sbjct: 65  TPKEICEVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNIMLVGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 66/246 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 239 DTTNILFIVGGAFAGLDKIIAQRGKGSAMGFGADVREKNDKGIGELFLDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVLATLQDLDEDALITILTEPKNALVKQYQRLFELEETALTFTDDALTAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLHIG 424
            A+   +     GAR L++++E +L +  F    +         E+ V  DA+ + +H G
Sbjct: 359 RAIERKT-----GARGLRSILEDILLETMFDLPGMDSVTEVVVNEEAVTSDAQPLMIH-G 412

Query: 425 DFPSET 430
           +   ET
Sbjct: 413 EADKET 418


>gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
 gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
          Length = 428

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +    +   EL   NILLVGPTG GKT
Sbjct: 69  PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T +ILFI  GAF                               V +      P DL+  
Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ ++ +  Q+K+L   EG+ L+F  D++ A+
Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+   +     GAR L+T++E VL D  +     +  + V+  E V  H
Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407


>gi|308270288|emb|CBX26900.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
           Desulfobacterium sp.]
          Length = 592

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 8/113 (7%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDEL---MPK 54
           KL F+  P  ++S LD+YII Q +AK  +A  +   + R       P DL D++   +  
Sbjct: 56  KLNFDLKPESLISYLDQYIIRQDNAKAVLATKICTHYNRIKTFNSYP-DLADDMFCGVKN 114

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+L++GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV
Sbjct: 115 NVLMLGPTGVGKTYMIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLV 167



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 67/222 (30%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS----- 290
           D+I++ + YGIV++DE DKI +  +  G  VSR GVQR LL  +E + V  K        
Sbjct: 172 DNIELAQ-YGIVYIDEIDKIASSHNLIGADVSRTGVQRALLKPLEETEVDMKVPHDPISM 230

Query: 291 -----------------INTDHILFIASGAF----------------------------- 304
                            +NT +ILFI SGAF                             
Sbjct: 231 MQEIERFRRTGKKNRRVVNTKNILFIVSGAFFDLAKIIQKRIANNTIGFGSTTPKTRSYA 290

Query: 305 ----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
               HV +  DL+      E  GR PVR  L+ L+ +D   IL++  + +IL  K     
Sbjct: 291 NVLKHV-KSEDLIEFGFESEFVGRLPVRAVLEDLDNNDLFEILSNPNNPIILGKKLDFAA 349

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
            GI + F E ++  LA+ A + N     IGAR L + +E+ L
Sbjct: 350 YGIDIKFEEKALRILANRAFDEN-----IGARGLVSAIEKAL 386


>gi|303231335|ref|ZP_07318069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513931|gb|EFL55939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 417

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNVVDDVELQKSNVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRAEERDVSAILKEVVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L F +D+++ +AD
Sbjct: 295 IPEFIGRLPVMVTLDLLDRDALVQILTKPKNALTKQYEKILSLDGVELTFEDDALEEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ ++E+V++ + +    +
Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKYVMYEVPSM 384


>gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [polymorphum
           gilvum SL003B-26A1]
 gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum
           gilvum SL003B-26A1]
          Length = 421

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRHVLDDYVIGQNSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    +V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGRKTSIGFKANVVGPEDRRIGELFSELEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALVKQYQRLFEMENVDLSFHEEALKAVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +    L+  K VVI  E V
Sbjct: 358 RAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVV 400


>gi|269214372|ref|ZP_05986447.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
 gi|269209943|gb|EEZ76398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
          Length = 442

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P    + EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ ++
Sbjct: 207 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 266

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 267 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 326

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E ++ ++A
Sbjct: 327 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 386

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 387 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 425


>gi|92114167|ref|YP_574095.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|122419775|sp|Q1QVW2|CLPX_CHRSD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91797257|gb|ABE59396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chromohalobacter salexigens DSM 3043]
          Length = 426

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
           +PREI + LD Y+IGQ  AKR +++A+ N ++R  L AD++ E   L   NILL+GPTG 
Sbjct: 67  APREIRNTLDDYVIGQDRAKRVLSVAVYNHYKR--LRADVKSEDVELGKSNILLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 GKTLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTASIPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T ++LFI  GAF     V R                               P DL    
Sbjct: 240 DTSNMLFIVGGAFAGLEKVIRDRVEKGGIGFNAEVKSKDSEKAMGDILAGVEPEDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     ILT+ +++LI QY  L   EG+ L+F ED++ A+A
Sbjct: 300 LIPEFVGRVPVIATLTELSEEALIQILTEPKNSLIKQYVHLFAMEGVELEFREDALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
             A+  N+     GAR L++++E VL D  +    L++ T VVIDA  +
Sbjct: 360 HKAMARNT-----GARGLRSILESVLLDTMYEVPSLEDVTKVVIDASVI 403


>gi|126441050|ref|YP_001059355.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126452859|ref|YP_001066626.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 1106a]
 gi|134277221|ref|ZP_01763936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|162210030|ref|YP_333873.2| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
 gi|167719123|ref|ZP_02402359.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei DM98]
 gi|167738117|ref|ZP_02410891.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 14]
 gi|167815309|ref|ZP_02446989.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 91]
 gi|167823711|ref|ZP_02455182.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 9]
 gi|167836266|ref|ZP_02463149.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
 gi|167845262|ref|ZP_02470770.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei B7210]
 gi|167893806|ref|ZP_02481208.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 7894]
 gi|167902258|ref|ZP_02489463.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910497|ref|ZP_02497588.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 112]
 gi|167918526|ref|ZP_02505617.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei BCC215]
 gi|217421598|ref|ZP_03453102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|226197310|ref|ZP_03792887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812683|ref|YP_002897134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242316368|ref|ZP_04815384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254179428|ref|ZP_04886027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|254189183|ref|ZP_04895694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197477|ref|ZP_04903899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|254260834|ref|ZP_04951888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
 gi|254297313|ref|ZP_04964766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|61211439|sp|Q63V40|CLPX_BURPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214765|sp|A3NWA5|CLPX_BURP0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214766|sp|A3NAI4|CLPX_BURP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126220543|gb|ABN84049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126226501|gb|ABN90041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106a]
 gi|134250871|gb|EBA50950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|157806801|gb|EDO83971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|157936862|gb|EDO92532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169654218|gb|EDS86911.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|184209968|gb|EDU07011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|217395340|gb|EEC35358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|225930689|gb|EEH26699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506116|gb|ACQ98434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242139607|gb|EES26009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254219523|gb|EET08907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397


>gi|87309270|ref|ZP_01091406.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Blastopirellula marina DSM 3645]
 gi|87287909|gb|EAQ79807.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Blastopirellula marina DSM 3645]
          Length = 425

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 3/109 (2%)

Query: 5   FNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           FN   SPREI++ L+ Y+IGQ +AK+ +++A+ N ++R  + A+  + E+   NI+L GP
Sbjct: 70  FNHVPSPREIMTHLNEYVIGQGNAKKVLSVAVHNHYKRLMMGAEGSEVEIEKSNIMLAGP 129

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 130 TGSGKTLLARTLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 178



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 64/220 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           G++++DE DKI    + N + ++R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 188 GVLYIDEIDKI--GKTSNNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYI 245

Query: 290 SINTDHILFIASGAF----------------------HVSRPAD---------------- 311
            I+T +ILFI  G F                           AD                
Sbjct: 246 QIDTSNILFICGGTFVGIEEIVRKRLGRKSIGFGQQTGYKSEADSAECLRQVNSDDILEF 305

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE+ GR PV   L+ L+ +  + +LT+ ++ LI QY++L + E   LDF++D+++A+
Sbjct: 306 GLIPELVGRLPVVCSLEPLDVAGLKSVLTEPKNALIKQYQQLFEMENAQLDFSDDALEAI 365

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           A  A+N  +     GAR L++++E V+ DI F   DL EK
Sbjct: 366 ALRAMNKGT-----GARGLRSIIEEVMLDIMF---DLPEK 397


>gi|134295957|ref|YP_001119692.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
 gi|166214767|sp|A4JF04|CLPX_BURVG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134139114|gb|ABO54857.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQERDAGEVLRETEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402


>gi|288929612|ref|ZP_06423456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329117|gb|EFC67704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+             Y  +
Sbjct: 176 GIVFVDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTTVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R IL + ++++I QY++L K +GI L F  +++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATETLDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E V+ D  F     + K   +  +Y R
Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKQFDVTLQYAR 397



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P +I + LD+YIIGQ +AKR +++++ N ++R + P  D   E+   NI++VG TG GKT
Sbjct: 64  PMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166


>gi|161524523|ref|YP_001579535.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189350721|ref|YP_001946349.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|221198215|ref|ZP_03571261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
 gi|221209203|ref|ZP_03582195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221215058|ref|ZP_03588025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|238687053|sp|A9AJR1|CLPX_BURM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160341952|gb|ABX15038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189334743|dbj|BAG43813.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221164994|gb|EED97473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|221170941|gb|EEE03396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221182147|gb|EEE14548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQDRDAGEVLRDVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402


>gi|254252157|ref|ZP_04945475.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
 gi|124894766|gb|EAY68646.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIIDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402


>gi|121605847|ref|YP_983176.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
 gi|166214799|sp|A1VRH7|CLPX_POLNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120594816|gb|ABM38255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
          Length = 421

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +     +    EL   NILL+GPTG 
Sbjct: 67  TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKESAKKDDVELTKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLL 169



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFSGLEKVIENRTEASGIGFGAAVKSKKARSLTEAFKDVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVIATLAELSEDALVQILTEPKNAVVKQFSKLLAMEGVDLEIRPSALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386


>gi|167562415|ref|ZP_02355331.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis EO147]
 gi|167569598|ref|ZP_02362472.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis C6786]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L++++E+ L D+ +    L+
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLK 391


>gi|258542725|ref|YP_003188158.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633803|dbj|BAH99778.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636862|dbj|BAI02831.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639915|dbj|BAI05877.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642971|dbj|BAI08926.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646026|dbj|BAI11974.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649079|dbj|BAI15020.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652066|dbj|BAI18000.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655123|dbj|BAI21050.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-12]
          Length = 421

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R    A   D E+   NILL+GPTG GK
Sbjct: 64  TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISKKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T ++LFI  GAF                                  H   P DL+    
Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGTNIGFGADVRAPDERKTGEILHDVEPEDLMKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + E + L+FT+D++ A+AD
Sbjct: 297 IPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMENVQLNFTDDALKAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+     V   GAR L++++E +L    F    L+
Sbjct: 357 RAI-----VRKTGARGLRSILESILMSTMFDLPGLE 387


>gi|154506029|ref|ZP_02042767.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
 gi|153793528|gb|EDN75948.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
          Length = 424

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD Y+IGQ +AK+ +++A+ N ++R    +DL  +L   NIL++GPTG GK
Sbjct: 65  LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAGSDLGVDLQKSNILMLGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVESILLKVIQAA 168



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 177 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 236

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                  H   P DL    
Sbjct: 237 IDTTNILFICGGAFEGIDKIIETRLDKKSIGFNAEIAKKHEEDVDVLLHQVLPQDLVKFG 296

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L  L+K     ILT+ +S+L+ QY++LM+ +G+ L+F + ++DA+A
Sbjct: 297 LIPELVGRVPVTVSLDLLDKEALIRILTEPKSSLVKQYQKLMELDGVKLEFDKAALDAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++   +     GAR L+ +ME ++ D  F
Sbjct: 357 ETSLARKT-----GARGLRAIMEDIMMDTMF 382


>gi|297544143|ref|YP_003676445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841918|gb|ADH60434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 424

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHI-MPEDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L+ QY++L + +G+ L+F + +++ +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D A+   +     GAR L+ ++E ++ D+ +   +S+  EK ++ +
Sbjct: 354 DKALERKT-----GARGLRAILEEIMLDVMYEIPSSENIEKCIITE 394


>gi|289577855|ref|YP_003476482.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermoanaerobacter italicus Ab9]
 gi|289527568|gb|ADD01920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter italicus Ab9]
          Length = 424

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHI-MPEDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L+ QY++L + +G+ L+F + +++ +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D A+   +     GAR L+ ++E ++ D+ +   +SD  EK ++ +
Sbjct: 354 DKALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394


>gi|167586933|ref|ZP_02379321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ubonensis Bu]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402


>gi|78066692|ref|YP_369461.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383]
 gi|107028899|ref|YP_625994.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116689943|ref|YP_835566.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia HI2424]
 gi|170733281|ref|YP_001765228.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|206560358|ref|YP_002231122.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia J2315]
 gi|122977698|sp|Q1BH84|CLPX_BURCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123756153|sp|Q39FE9|CLPX_BURS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214761|sp|A0K846|CLPX_BURCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688580|sp|B1JTU9|CLPX_BURCC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693098|sp|B4EBM2|CLPX_BURCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77967437|gb|ABB08817.1| ClpX, ATPase regulatory subunit [Burkholderia sp. 383]
 gi|105898063|gb|ABF81021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia AU 1054]
 gi|116648032|gb|ABK08673.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia HI2424]
 gi|169816523|gb|ACA91106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|198036399|emb|CAR52295.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           cenocepacia J2315]
 gi|325518992|gb|EGC98515.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia sp.
           TJI49]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402


>gi|293366377|ref|ZP_06613056.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319502|gb|EFE59869.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 420

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|329114675|ref|ZP_08243434.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
 gi|326696155|gb|EGE47837.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
          Length = 421

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R    A   D E+   NILL+GPTG GK
Sbjct: 64  TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISKKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T ++LFI  GAF                                  H   P DL+    
Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGTNIGFGADVRAPDERKTGEILHDVEPEDLMKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + E + LDFT+D++ A+AD
Sbjct: 297 IPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMEDVQLDFTDDALKAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+     V   GAR L++++E +L    F    L+
Sbjct: 357 RAI-----VRKTGARGLRSILESILMSTMFDLPGLE 387


>gi|307128584|ref|YP_003880614.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
 gi|306483046|gb|ADM89916.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
          Length = 344

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 56/232 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  ++    I   VS EGVQ+ LL ++EG+ V+            K   +
Sbjct: 114 GIVFIDEIDKISRKNENTSITRDVSGEGVQQALLKILEGTIVNVPPNVGRKHPDQKMIKL 173

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLLP 314
           NT +ILFIA GAF                                     H  +   L+P
Sbjct: 174 NTKNILFIAGGAFEGLKDIISNRLNISTIGFKTKFDKKINDKNLLKFVGTHDLKKFGLIP 233

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+  +L SL++   + IL + ++ +I QYK+L   + I L FT+ +ID + D A
Sbjct: 234 ELIGRLPIISNLNSLDRESLKRILLEPKNAIIKQYKKLFYMDKINLKFTDSAIDLIVDKA 293

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           + L+     +GAR L+++ + +++D  F+   ++E +++ID   V+  + ++
Sbjct: 294 IKLS-----LGARGLKSICDNIIKDYMFNIDSIKE-SLIIDKFDVKCQLNNW 339



 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKL +   P++I   LD+Y+IGQ+DAK+ +++A+ N ++R  L   L DE+   N+L++G
Sbjct: 1   MKLNY---PKKIKDFLDQYVIGQEDAKKTISVAVYNHYKRIYL---LNDEIDKSNVLMIG 54

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            TG GKT I++ +++    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 55  DTGTGKTLIAKSISKFLNVPFAIADATSLTEAGYVGEDVESILTKLLQSA 104


>gi|209885040|ref|YP_002288897.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
 gi|229484078|sp|B6JGU8|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
          Length = 424

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISSRGRTTSIGFAASVLAPEDRRTGEIFREVEPEDLLKYGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E + L F ++++ A+A 
Sbjct: 298 IPEFVGRLPVVATLEDLDEASLKKILVEPKNALVKQYQRLFEMENVELTFADEALGAVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|186475777|ref|YP_001857247.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
 gi|238691290|sp|B2JGL6|CLPX_BURP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|184192236|gb|ACC70201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDETALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYELPAMKGVSKVI 397


>gi|115351961|ref|YP_773800.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170702051|ref|ZP_02892967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171320791|ref|ZP_02909798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|172060887|ref|YP_001808539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
 gi|122322953|sp|Q0BEF7|CLPX_BURCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689158|sp|B1YRZ4|CLPX_BURA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115281949|gb|ABI87466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170133037|gb|EDT01449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171093961|gb|EDT39075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|171993404|gb|ACB64323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
          Length = 423

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPAMKGVSKVIIDENV 402


>gi|319400990|gb|EFV89209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis FRI909]
          Length = 420

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|239637528|ref|ZP_04678500.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus warneri L37603]
 gi|239596746|gb|EEQ79271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus warneri L37603]
 gi|330684285|gb|EGG96023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU121]
          Length = 420

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+A+++A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKALSVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 55/223 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + L F+E+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDNVELVFSEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           +   +     GAR L++++E  L DI +     ++ T V+  E
Sbjct: 357 IARKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVVITE 394


>gi|39996890|ref|NP_952841.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
 gi|61211572|sp|Q74C83|CLPX_GEOSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39983778|gb|AAR35168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
          Length = 417

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +    P+D+  E+   NILL+GPTG G
Sbjct: 66  PREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILFI  GAF                         V +          P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDSIIQQRIGVKKLGFGADVKSKVEKRAGELLTEVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL + ++ LI QY++L + E + L FT+ S+ A++ 
Sbjct: 298 IPEFIGRLPVLATLRELDETAMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLVAISR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S    K VVI+ + +
Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVINEDVI 400


>gi|27468267|ref|NP_764904.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867149|ref|YP_188812.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           epidermidis RP62A]
 gi|242242938|ref|ZP_04797383.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251811069|ref|ZP_04825542.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875905|ref|ZP_06284772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis SK135]
 gi|38257569|sp|Q8CNY5|CLPX_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71153013|sp|Q5HNM9|CLPX_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27315813|gb|AAO04948.1|AE016748_182 protease ClpX [Staphylococcus epidermidis ATCC 12228]
 gi|57637807|gb|AAW54595.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis RP62A]
 gi|242233539|gb|EES35851.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251805404|gb|EES58061.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294930|gb|EFA87457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis SK135]
 gi|329724687|gb|EGG61193.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU144]
 gi|329733781|gb|EGG70107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU045]
 gi|329737339|gb|EGG73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU028]
          Length = 420

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  L DI +
Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379


>gi|312869037|ref|ZP_07729214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           oris PB013-T2-3]
 gi|311095463|gb|EFQ53730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           oris PB013-T2-3]
          Length = 416

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNIL 57
           K TF   +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R        +   EL   NI 
Sbjct: 56  KQTFRVPTPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENDETELQKSNIA 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 116 VIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTSNILFIVGGAFDGIENIVKERIGEKTIGFGTSSSARDNITEKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL+K +G  L FT+ ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALQKLDEQDLIWILTEPKNALVKQYQELIKLDGSELSFTDGALRAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++A+  N+     GAR L++++E V++D+ F
Sbjct: 357 ELAIKRNT-----GARGLRSIIEEVMQDVMF 382


>gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB18]
 gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisA53]
 gi|122296221|sp|Q07NN5|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122476340|sp|Q215J1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB18]
 gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisA53]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|83721081|ref|YP_442644.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|167581578|ref|ZP_02374452.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis TXDOH]
 gi|167619694|ref|ZP_02388325.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis Bt4]
 gi|257138855|ref|ZP_05587117.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|123536902|sp|Q2SWQ5|CLPX_BURTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83654906|gb|ABC38969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
          Length = 423

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397


>gi|30248063|ref|NP_840133.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea
           ATCC 19718]
 gi|46576514|sp|Q82Y56|CLPX_NITEU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|30179948|emb|CAD83943.1| clpX; ATP-dependent protease (ATP-binding specificity subunit)
           [Nitrosomonas europaea ATCC 19718]
          Length = 426

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 75/116 (64%), Gaps = 4/116 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P EI   LD+Y+IGQ+ AK+ +++A+ N ++R +  + + +    EL   NILL+GPTG
Sbjct: 65  TPHEIRETLDQYVIGQESAKKILSVAVYNHYKRLKNLSKVNNGDDVELSKSNILLIGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+    + V +++R
Sbjct: 125 SGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQKCNHDVEKAQR 180



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++            + ++  I
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTALVPPQGGRKHPNQEFIQI 240

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313
           +T +ILFI  GAF     + R                               P DL+   
Sbjct: 241 DTTNILFICGGAFDGIDKIIRGRSEKSGIGFGADVINQNDRKELNKILKDIEPEDLIKYG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDAL 370
             PE  GR PV   L  LN++    IL + ++ LI QY +L   E G+ L+F E ++ A+
Sbjct: 301 LIPEFVGRLPVVATLSELNEAALIQILVEPKNALIKQYNKLFSMEGGVELEFREQALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A  A++  +     GAR L++++E  L DI +    ++  + V+
Sbjct: 361 ARKALSRKT-----GARGLRSILEETLLDIMYDLPSIENVSKVV 399


>gi|48927362|emb|CAG34253.1| hypothetical protein [Stenotrophomonas maltophilia]
          Length = 112

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 75/112 (66%)

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L+K DF  ILT+ ++ L  QY+ L+ TEG+ + FT D+I+ LA++A  +N    +IG
Sbjct: 1   LGALSKGDFVRILTEPKAALAKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIG 60

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TV+ER+L+ +S+ A D   +++ ID+ YV  H+G+   + D+  +IL
Sbjct: 61  ARRLHTVLERLLDSLSYEAPDRDGESLAIDSAYVDKHLGELVQDPDLSRYIL 112


>gi|296271573|ref|YP_003654204.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095748|gb|ADG91698.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter
           nitrofigilis DSM 7299]
          Length = 415

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 63/102 (61%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD Y+IGQ DAK+ +A+AL N ++R   P     EL   NI+L+GPTG GKT 
Sbjct: 60  PIKIKEHLDEYVIGQDDAKKVLAVALYNHYKRIDKPIVKNVELEKSNIMLIGPTGSGKTL 119

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 LAKSLAKIMDVPFAVADATALTEAGYVGEDVESILSRLLAAA 161



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 51/221 (23%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSV------STKYGS-----I 291
           GIV++DE DKI   +  + +G  VS EGVQ+ LL ++EG+ V      S K  S      
Sbjct: 171 GIVYIDEIDKIANKSESATSGRDVSGEGVQQGLLKILEGAEVYVPVKGSRKNSSAETIIF 230

Query: 292 NTDHILFIASGAFHVSRPAD--------------------------------LLPEIQGR 319
           +T H+LFI  GAF   R  +                                L+PE  GR
Sbjct: 231 DTTHVLFICGGAFVGLRKDENKEKSTVMGFLNKDNKQKDKKDIEAKELISFGLIPEFIGR 290

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L+K D   +L + ++ +  QY+ L + +G+ L F + ++D +A++A     
Sbjct: 291 IPVIAELNKLSKDDLIRVLKEPKNAITKQYEILFELDGVDLKFDDKALDEIANIAYE--- 347

Query: 380 TVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
              D+GAR L+ ++E+++  + ++  S+    + VI  EY+
Sbjct: 348 --KDVGARGLRGIIEKLMLPLQYTIPSEENLGSCVITQEYI 386


>gi|255316618|ref|ZP_05358201.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-76w55]
          Length = 379

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 49/223 (21%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS------SVSTKYGSINTDHIL 297
           YGIVFLDE DK+   ++     V +EGVQ+ LL L+EG+       ++  Y  I+T +IL
Sbjct: 157 YGIVFLDEIDKLAKNNTTYKNQVGKEGVQQALLKLIEGTICKIQDDITKDYVEIDTTNIL 216

Query: 298 FIASGAF-------------------------HVSRPAD---------------LLPEIQ 317
           FI  GAF                           S   D               ++PE  
Sbjct: 217 FICGGAFVGIEDIIKERLHKKTIGFKSSLSLEETSLTKDEIRKNINIDDLYNFGMIPEFL 276

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFPV  +L++L+    +LIL  +E  LI  Y +L + +   L+FTE+++  +A++A+  
Sbjct: 277 GRFPVICNLETLDIEKVKLILK-SEEGLIGDYNKLFELQDKELEFTEEALSLIANLAIEE 335

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           N  +  +GAR L+T +   + ++ F AS+  E+  +I  E V+
Sbjct: 336 NVLM--LGARGLKTFLSPFMTELMFCASNDNEQKYLITEERVK 376



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 35/254 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I+  +D++IIGQ  AK+ +A  + N +       D+       NILL G +G GKT 
Sbjct: 51  PIDIIKYMDKFIIGQDKAKKMIATTIYNHYLSIINKVDVE----KNNILLTGASGTGKTL 106

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123
           I++ LA     PF+  +    TE GY+G++VE II  L + A   + +++      DE+ 
Sbjct: 107 IAKTLANFLDVPFVVADANTLTEAGYIGKDVESIIASLYNKANKNLNKTKYGIVFLDEID 166

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIP 182
           + A  N   +     VGK            KL +G I   + DI       D +N   I 
Sbjct: 167 KLAKNNTTYK---NQVGKEGVQQA----LLKLIEGTICKIQDDITKDYVEIDTTNILFIC 219

Query: 183 GGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           GGA VGI ++    L  K +G     K  +S+++    L +DE  + I++D ++      
Sbjct: 220 GGAFVGIEDIIKERLHKKTIGF----KSSLSLEE--TSLTKDEIRKNINIDDLY------ 267

Query: 241 VENYGIV--FLDEF 252
             N+G++  FL  F
Sbjct: 268 --NFGMIPEFLGRF 279


>gi|260060593|ref|YP_003193673.1| ATP-dependent protease ATP-binding subunit ClpX [Robiginitalea
           biformata HTCC2501]
 gi|88784723|gb|EAR15892.1| ATP-dependent protease ATP-binding subunit [Robiginitalea biformata
           HTCC2501]
          Length = 411

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDELDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT++ILFIA GAF      ++R                            P DL     +
Sbjct: 235 NTENILFIAGGAFDGIERIITRRLNMQAIGYSASKREETLDAENVLQYIIPKDLKEFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L++   R ILT+  + +I QY++L   +GI    T+ ++D + D 
Sbjct: 295 PEIIGRLPVLTHMNPLDRKTLRSILTEPRNAIIKQYEKLFAMDGITFRITDQALDFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E V  D  F     +E    +   Y
Sbjct: 355 AIEYK-----LGARGLRSLCEAVFTDAMFELPSTEETEFKVTKPY 394



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVGK 66
           P EI   LD Y+IGQ+  K+ +++A+ N ++R   P+   DE+     NI++VG TG GK
Sbjct: 62  PVEIKEFLDTYVIGQERTKKVLSVAVYNHYKRLLQPSSKEDEIEIQKSNIVMVGQTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165


>gi|108804373|ref|YP_644310.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765616|gb|ABG04498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rubrobacter
           xylanophilus DSM 9941]
          Length = 420

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   L+ Y+IGQ++AK+ +++A+ N ++R Q+ A+  D  EL   NILL+GPTG GK
Sbjct: 61  PREINRILNEYVIGQEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLLAETLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 164



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 64/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 174 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQI 233

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV +P DLL   
Sbjct: 234 DTKNILFICGGAFGGLEDIIRQRIGKRSIGFSSGLDRRLEEDSDEILRHV-QPEDLLKYG 292

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L SL + D   ILT+ ++ L+ QY+++ + + + L FT++++ A+A
Sbjct: 293 LIPEFVGRLPVISTLHSLQERDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIA 352

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           + A+   +     GAR L++++E  L    +   S SD+ +   V+DA+ VR
Sbjct: 353 EQALERGT-----GARGLRSILEAALLPTMYELPSRSDVTK--CVVDADTVR 397


>gi|316933822|ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
 gi|315601536|gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFAGLEKIISGRGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
 gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
          Length = 422

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 178



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 65/238 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIISARGKGSAMGFGADVRDNDERGVGEVFKDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   LDFT++++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDTELDFTDEALKAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLH 422
            A+   +     GAR L+++ME +L +  F    +         E+ V  DA+ + +H
Sbjct: 359 KAIQRKT-----GARGLRSIMEDILLNTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIH 411


>gi|119473284|ref|ZP_01614936.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
 gi|119444507|gb|EAW25827.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
          Length = 427

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH-------------------VS-----------------RPADL--- 312
           +T  ILFI  GAF                    VS                  P DL   
Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVSVKESAETRSLSETFKDVEPEDLVKY 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++ A+
Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALSAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+     V   GAR L++++E +L D  +    + +   VVID   ++
Sbjct: 362 AHKAM-----VRKTGARGLRSIVEGILLDTMYELPSMDDVSKVVIDETVIK 407


>gi|329733101|gb|EGG69438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 420

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL +   D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           +   +     GAR L++++E  L DI F     +  T VVI A+ +
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTI 397


>gi|153813469|ref|ZP_01966137.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
 gi|149830413|gb|EDM85505.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
          Length = 437

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASKNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 57/212 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 177 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236

Query: 290 SINTDHILFIASGAFH--------------------VS--------------RPAD---- 311
            I+T +ILFI  GAF                     VS               P D    
Sbjct: 237 QIDTTNILFICGGAFDGIEKTIEARQDTKSIGFGADVSVQEERNIGEILKDVMPEDFIKY 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+ V L  L++     IL + +++L  QY +L + +G+ L+F E+++  +
Sbjct: 297 GLIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFQEEALKEV 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  ++   +     GAR L+++ME+ L D+ +
Sbjct: 357 ARKSLERKT-----GARGLRSIMEKSLMDLMY 383


>gi|77360985|ref|YP_340560.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875896|emb|CAI87117.1| ATPase, chaperone subunit of serine protease [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 427

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312
           +T  ILFI  GAF                            SR          P DL   
Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVDVKESAASRSLSDTFKDVEPEDLVKY 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++ A+
Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALIQILSEPKNAITKQFSVLFGMEDVELEFRDDALAAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    +     VVID   ++
Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDNVSKVVIDETVIK 407


>gi|91977363|ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB5]
 gi|123762673|sp|Q135W8|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91683819|gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB5]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|332532269|ref|ZP_08408150.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038367|gb|EGI74812.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 427

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312
           +T  ILFI  GAF                            SR          P DL   
Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVSVKESAASRSLSETFKDVEPEDLVKY 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++ A+
Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALAAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    + +   VVID   ++
Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDDVSKVVIDETVIK 407


>gi|282916934|ref|ZP_06324692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus D139]
 gi|282319421|gb|EFB49773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus D139]
          Length = 420

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++++ + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLESDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|57238934|ref|YP_180070.1| ATP-dependent protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578867|ref|YP_197079.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58616925|ref|YP_196124.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|75356618|sp|Q5FFG6|CLPX_EHRRG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81353017|sp|Q5HBX4|CLPX_EHRRW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|57161013|emb|CAH57919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58416537|emb|CAI27650.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Gardel]
 gi|58417493|emb|CAI26697.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 406

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T +  P+EI   LD Y+IGQ+ +K+ +++A+ N ++R      + D E+   N+LL+GPT
Sbjct: 56  TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGIISDVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVESILLKLLQAANFNVEAAQR 172



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 173 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           NTD+ILFI  GAF                                  + P DL     +P
Sbjct: 233 NTDNILFIFGGAFDGLEKIIESRHQGSNMGFEANVQKASKDKDIFCYTEPEDLVKFGLIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+++    IL + +++L+ QYK+L + + I L+F + ++  +A  A
Sbjct: 293 EFVGRIPVITSLGELDEATLCRILVEPKNSLVKQYKKLFEMDNINLEFDDSALSEIARKA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
                 V   GAR L+ ++E +L D+ F
Sbjct: 353 -----AVRKAGARGLRAILENLLLDLMF 375


>gi|160878536|ref|YP_001557504.1| ATP-dependent protease ATP-binding subunit [Clostridium
           phytofermentans ISDg]
 gi|189082493|sp|A9KSX1|CLPX_CLOPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160427202|gb|ABX40765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           phytofermentans ISDg]
          Length = 433

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ++AK+ +++++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 65  LKPKEIKEFLDQYVIGQEEAKKVLSVSVYNHYKRVLSEKDLDVELQKSNILMIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TYVAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 168



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 57/212 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EGS  S            ++ 
Sbjct: 176 QYGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGSVASVPPQGGRKHPHQEFI 235

Query: 290 SINTDHILFIASGAF-----------------------HVSR-----------PADLL-- 313
            I+T +ILFI  GAF                       H  +           P DL+  
Sbjct: 236 QIDTTNILFICGGAFDGLEKIVEARIGQKSIGFNAEIAHGQKENIGDLFRQVLPQDLIKF 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ +  QY++L + +G+ L F ED++  +
Sbjct: 296 GMIPEFVGRVPVNTALDLLDEQALVRILTEPKNAITKQYRKLFELDGVELVFEEDALKEI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  +    +     GAR L+ +ME V+ D  F
Sbjct: 356 AKRSFERKT-----GARGLRAIMESVMMDSMF 382


>gi|15924664|ref|NP_372198.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927253|ref|NP_374786.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus N315]
 gi|57650546|ref|YP_186559.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161950|ref|YP_494316.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195479|ref|YP_500283.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148268155|ref|YP_001247098.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394222|ref|YP_001316897.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221780|ref|YP_001332602.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979992|ref|YP_001442251.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161509893|ref|YP_001575552.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142575|ref|ZP_03567068.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253317182|ref|ZP_04840395.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732326|ref|ZP_04866491.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253734541|ref|ZP_04868706.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006459|ref|ZP_05145060.2| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794060|ref|ZP_05643039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9781]
 gi|258415764|ref|ZP_05682035.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus A9763]
 gi|258421999|ref|ZP_05684919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9719]
 gi|258438243|ref|ZP_05689527.1| protease ClpX [Staphylococcus aureus A9299]
 gi|258443701|ref|ZP_05692040.1| protease ClpX [Staphylococcus aureus A8115]
 gi|258444939|ref|ZP_05693259.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           A6300]
 gi|258447993|ref|ZP_05696125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A6224]
 gi|258454299|ref|ZP_05702268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5937]
 gi|262048649|ref|ZP_06021532.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|269203293|ref|YP_003282562.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282893170|ref|ZP_06301404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A8117]
 gi|282920215|ref|ZP_06327940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9765]
 gi|282929348|ref|ZP_06336915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A10102]
 gi|284024723|ref|ZP_06379121.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848696|ref|ZP_06789442.1| ATP-dependent Clp protease [Staphylococcus aureus A9754]
 gi|295405985|ref|ZP_06815793.1| ATP-dependent Clp protease [Staphylococcus aureus A8819]
 gi|296274898|ref|ZP_06857405.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297207612|ref|ZP_06924047.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245089|ref|ZP_06928966.1| ATP-dependent Clp protease [Staphylococcus aureus A8796]
 gi|304380734|ref|ZP_07363403.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|54036856|sp|P63790|CLPX_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040894|sp|P63789|CLPX_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71153012|sp|Q5HF98|CLPX_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122539337|sp|Q2FXQ7|CLPX_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123485475|sp|Q2FG62|CLPX_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215209|sp|A7X396|CLPX_STAA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172048936|sp|A6QHK8|CLPX_STAAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044154|sp|A6U2E2|CLPX_STAA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044155|sp|A5ITJ9|CLPX_STAA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044156|sp|A8Z2J5|CLPX_STAAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13701471|dbj|BAB42765.1| protease ClpX [Staphylococcus aureus subsp. aureus N315]
 gi|14247446|dbj|BAB57836.1| protease [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284732|gb|AAW36826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127924|gb|ABD22438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203037|gb|ABD30847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741224|gb|ABQ49522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946674|gb|ABR52610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374580|dbj|BAF67840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722127|dbj|BAF78544.1| protease [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368702|gb|ABX29673.1| S14 family endopeptidase ClpX [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723926|gb|EES92655.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253727482|gb|EES96211.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257788032|gb|EEV26372.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9781]
 gi|257839357|gb|EEV63830.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus A9763]
 gi|257842043|gb|EEV66472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9719]
 gi|257848287|gb|EEV72278.1| protease ClpX [Staphylococcus aureus A9299]
 gi|257851107|gb|EEV75050.1| protease ClpX [Staphylococcus aureus A8115]
 gi|257856147|gb|EEV79062.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           A6300]
 gi|257858754|gb|EEV81625.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A6224]
 gi|257863529|gb|EEV86288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5937]
 gi|259163296|gb|EEW47855.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262075583|gb|ACY11556.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941155|emb|CBI49542.1| ATP-dependent Clp protease ATP-binding subunitClpX [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282589080|gb|EFB94181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A10102]
 gi|282594563|gb|EFB99548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9765]
 gi|282764488|gb|EFC04614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A8117]
 gi|285817358|gb|ADC37845.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus 04-02981]
 gi|294824722|gb|EFG41145.1| ATP-dependent Clp protease [Staphylococcus aureus A9754]
 gi|294968982|gb|EFG45003.1| ATP-dependent Clp protease [Staphylococcus aureus A8819]
 gi|296887629|gb|EFH26527.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297178169|gb|EFH37417.1| ATP-dependent Clp protease [Staphylococcus aureus A8796]
 gi|302751501|gb|ADL65678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340733|gb|EFM06664.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312830053|emb|CBX34895.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315198631|gb|EFU28959.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140447|gb|EFW32301.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143985|gb|EFW35754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314348|gb|AEB88761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727550|gb|EGG64006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728356|gb|EGG64793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 420

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           +   +     GAR L++++E  L DI F     +  T VVI A+ +
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTI 397


>gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ  AK+ +A+A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 67  TPQDILQVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKNSSVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------L 312
           +T +ILFI  GAF                    V + +D                    L
Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKNSDDRPVGEVLRNIESEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E I L F ED++  +A 
Sbjct: 300 IPEFIGRLPVLATLEDLDEDSLIRILSEPKNALVKQYQCLFEMEDIELVFHEDALREIAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+     +   GAR L+++ME++L D  F
Sbjct: 360 RAI-----IHKTGARGLRSIMEKILLDTMF 384


>gi|146299463|ref|YP_001194054.1| ATP-dependent protease ATP-binding subunit [Flavobacterium
           johnsoniae UW101]
 gi|146153881|gb|ABQ04735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Flavobacterium johnsoniae UW101]
          Length = 410

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233

Query: 292 NTDHILFIASGAF------------------HVSRPAD--------------------LL 313
           NT +ILFIA GAF                    S+ AD                    L+
Sbjct: 234 NTQNILFIAGGAFDGVERIISKRLNRQAVGYSTSKNADNIDKDNLLQYIIPKDIKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+K   R ILT  ++ L+ QY++L   + +    T++++D + D 
Sbjct: 294 PEIIGRLPVLTHMDPLDKETLRAILTQPKNALVKQYQKLFLMDEVEFTITDEALDFIVDK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  +      +K + ID +Y
Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSDDKILSIDKDY 393



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 5/114 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI + LD+Y+IGQ   K+ +++A+ N ++R   QQL  ++  E+   NI++VG TG G
Sbjct: 62  PKEIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQQLDDEV--EIEKSNIIMVGQTGTG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 120 KTLVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVTKAER 173


>gi|239616657|ref|YP_002939979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505488|gb|ACR78975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga
           olearia TBF 19.5.1]
          Length = 403

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 57/218 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            YGI+++DE DKI  + S   I   VS EGVQ+ LL +VEG+  +V  + G         
Sbjct: 165 QYGIIYIDEIDKITRKTSNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFI 224

Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADLL-- 313
            I+T +ILFI  GAF                                      P DL+  
Sbjct: 225 KIDTTNILFIVGGAFDGLDEIIKERILTSTMGFGAEVKGKDSYRLGEILAQVGPDDLIHY 284

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFPV   L  L+  D + I+ + ++ +I QY++L++ EGI L FTED++ A+
Sbjct: 285 GMIPEFVGRFPVVATLDDLSVEDLKRIMLEPKNAVIKQYQKLLEIEGITLQFTEDALTAI 344

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A  A+   +     GAR +++V+E V+ DI F A  ++
Sbjct: 345 AKEALKRGT-----GARAIKSVIESVMLDIMFEAPSME 377



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + +D   E+   NI+L+GPTG GKT 
Sbjct: 57  PAEIKAILDQYVIGQEKAKKTISVAVYNHYKRVFIGSD-DIEVEKSNIMLIGPTGSGKTL 115

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           I+R LA++   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 116 IARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLQAA 157


>gi|163736127|ref|ZP_02143546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
 gi|161389997|gb|EDQ14347.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
          Length = 422

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 65/238 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVRDDSDAGVGETFKDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFTE+++ ++A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV------IDAEYVRLH 422
            A+   +     GAR L++++E +L +  F     D  EK VV       DA+ + +H
Sbjct: 359 KAIERKT-----GARGLRSILEDILLNTMFELPGMDSVEKVVVNEEAVNSDAQPLMIH 411


>gi|256752436|ref|ZP_05493295.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748705|gb|EEU61750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L + +G+ L+F + ++  +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D+A+   +     GAR L+ ++E ++ D+ +   +SD  EK ++ +
Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394


>gi|228475207|ref|ZP_04059933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis SK119]
 gi|228270818|gb|EEK12220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis SK119]
          Length = 420

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 65/242 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY +++  + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLALDNVELEFTEEALAAVSEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           +   +     GAR L++++E  L DI +   S SD+ +  VV+ A+ +   I     E +
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMYDVPSTSDVAK--VVVTAQTINEEI-----EPE 404

Query: 432 MY 433
           MY
Sbjct: 405 MY 406


>gi|167040914|ref|YP_001663899.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
           sp. X514]
 gi|300914950|ref|ZP_07132266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X561]
 gi|307723816|ref|YP_003903567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X513]
 gi|238687634|sp|B0K532|CLPX_THEPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166855154|gb|ABY93563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X514]
 gi|300889885|gb|EFK85031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X561]
 gi|307580877|gb|ADN54276.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X513]
          Length = 424

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L + +G+ L+F + ++  +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D+A+   +     GAR L+ ++E ++ D+ +   +SD  EK ++ +
Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394


>gi|56551845|ref|YP_162684.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761833|ref|ZP_04759919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260752593|ref|YP_003225486.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|61211394|sp|Q5NNY7|CLPX_ZYMMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56543419|gb|AAV89573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241373747|gb|EER63307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258551956|gb|ACV74902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 422

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ  AKR +++A+ N ++R      D   EL   NILL+GPTG GK
Sbjct: 65  TPQEICTILDQYVIGQSKAKRVLSVAVHNHYKRLNHGGKDADVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T ++  LAR    PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAETLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 178 GIVYIDEIDKITRKSDNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    HV+ P +                   L
Sbjct: 238 DTTNILFICGGAFAGLDRIIADRLEGKSIGFGAHVAAPDERRTGEILQECEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++S    ILT+ ++ L+ QY++L + E   L+FTED++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEDALAAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             +   +     GAR L++++E +L D  F    L+  + +I
Sbjct: 358 KGIERKT-----GARGLRSILEGILLDTMFELPSLEGVSEII 394


>gi|282850556|ref|ZP_06259935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
 gi|282580049|gb|EFB85453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
          Length = 417

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A  +I R  R
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 235 DTTNILFICGGAFDSMDKVITKRTAKKTLGFGADVQRKEERNISAILKDVVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L FTED+++ +AD
Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L+ ++E+V++ + F    + E T  I
Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391


>gi|258451811|ref|ZP_05699833.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5948]
 gi|257860523|gb|EEV83349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5948]
          Length = 420

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI++ DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYGDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|254429578|ref|ZP_05043285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
 gi|196195747|gb|EDX90706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
          Length = 426

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +     RDE  L   NILL+GPTG GK
Sbjct: 68  PNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T ++LFI  GAF     V R                               P DL    
Sbjct: 241 DTSNMLFICGGAFAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLGELLVDVEPEDLVKYG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+  + L  QY  L + EG+ LDF +D++ A+A
Sbjct: 301 LIPEFIGRLPVIATLEELSEEALIQILTEPRNALTKQYARLFEMEGVELDFRDDALRAIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+     V   GAR L++++E VL D  +    +     VVID+  ++
Sbjct: 361 NKAM-----VRKTGARGLRSILEGVLLDTMYQVPSMDSVAKVVIDSPTIK 405


>gi|21283347|ref|NP_646435.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486501|ref|YP_043722.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300911694|ref|ZP_07129138.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|23813855|sp|Q8NW72|CLPX_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56748666|sp|Q6G8Q1|CLPX_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21204787|dbj|BAB95483.1| protease ClpX [Staphylococcus aureus subsp. aureus MW2]
 gi|49244944|emb|CAG43405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300887115|gb|EFK82316.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 420

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDNVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium loti
           MAFF303099]
 gi|21263478|sp|Q982V5|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium
           loti MAFF303099]
          Length = 424

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P D                   L
Sbjct: 240 DTANILFICGGAFAGLDKIISDRGRKTSIGFGATVASPEDRRTGDIFRQVEPEDLLKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 300 IPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 360 RAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402


>gi|167038049|ref|YP_001665627.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116458|ref|YP_004186617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326391009|ref|ZP_08212558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus JW 200]
 gi|238687678|sp|B0KBA3|CLPX_THEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166856883|gb|ABY95291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929549|gb|ADV80234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325992954|gb|EGD51397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 424

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L + +G+ L+F + ++  +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D+A+   +     GAR L+ ++E ++ D+ +   +SD  EK ++ +
Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394


>gi|315127188|ref|YP_004069191.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
 gi|315015702|gb|ADT69040.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
          Length = 427

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRNHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDVELGKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312
           +T  ILFI  GAF                            SR          P DL   
Sbjct: 242 DTSKILFICGGAFAGLDKVIEQRSHKNTGIGFGVDVKESAASRSLSETFKDVEPEDLVKY 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++ A+
Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALRAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    +     VV+D   ++
Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSIDNVSKVVVDETVIK 407


>gi|76581159|gb|ABA50634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
          Length = 466

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 111 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 169

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 170 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 223



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 224 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 283

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 284 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 343

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A 
Sbjct: 344 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 403

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    L+  + VI
Sbjct: 404 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 440


>gi|83311890|ref|YP_422154.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetospirillum
           magneticum AMB-1]
 gi|123541533|sp|Q2W3I0|CLPX_MAGSA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82946731|dbj|BAE51595.1| ATP-dependent protease Clp [Magnetospirillum magneticum AMB-1]
          Length = 421

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R Q      + EL   NILL+GPTG GK
Sbjct: 65  TPKDICQVLDDYVIGQSHAKKVLSVAVHNHYKRLQHGGKNNEVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 177



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E   L F++D++ A+A+
Sbjct: 298 IPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLAFSDDALKAIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L     VVI+ E V
Sbjct: 358 KAIARKT-----GARGLRSIMETILLDTMFDLPGLDAVDEVVINKEVV 400


>gi|302333340|gb|ADL23533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 420

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|302335571|ref|YP_003800778.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli
           DSM 7084]
 gi|301319411|gb|ADK67898.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli
           DSM 7084]
          Length = 431

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPAD-LRDELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR         AD  R EL   NILL+GP
Sbjct: 72  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRIISGDDGTNADGERVELAKSNILLLGP 131

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 132 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 180



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 190 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIHI 249

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312
           +T +ILFI  GAF                     +++              P DL     
Sbjct: 250 DTKNILFICGGAFVGLDKIVADRIGKKGIGFNAELAKRVEENQDELMGQVMPQDLHKFGM 309

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV    K L + D   ILT  ++ ++ QY+ + + EG+ LDF +D++  +A 
Sbjct: 310 IPEFIGRIPVITSTKELTEDDLVEILTKPKNAIVKQYRRMFEIEGVELDFDDDALREVAA 369

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L+ + E  LE+  F   SDL    VV+  E V
Sbjct: 370 QAIARGT-----GARGLRAICESTLEETMFDLPSDLDITRVVVTKESV 412


>gi|257791674|ref|YP_003182280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           lenta DSM 2243]
 gi|257475571|gb|ACV55891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           lenta DSM 2243]
          Length = 471

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+ +EL  +++GQ+ AKRA+++A+ N ++R  L AD  D   EL   NI+L+GPTG 
Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAA 211



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 60/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL +VEG+  SV  + G          I
Sbjct: 221 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHI 280

Query: 292 NTDHILFIASGAF---------------------------HVSR-------PADL----- 312
           +T +ILFI  GAF                           H          P DL     
Sbjct: 281 DTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKKHAEAELLARVLPEDLNKYGM 340

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++ D   ILT+ ++ L+ QY ++ + E  +L F  +++ A+A 
Sbjct: 341 IPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKMFEFEDSVLTFEPEALKAIAH 400

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            AV   +     GAR L+++ ERVL+D+ +   DL E+
Sbjct: 401 EAVEHGT-----GARGLRSICERVLQDVMY---DLPEQ 430


>gi|49483917|ref|YP_041141.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425790|ref|ZP_05602214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428456|ref|ZP_05604854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431090|ref|ZP_05607467.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433773|ref|ZP_05610131.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436689|ref|ZP_05612733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M876]
 gi|258424091|ref|ZP_05686973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9635]
 gi|282904246|ref|ZP_06312134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906071|ref|ZP_06313926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908986|ref|ZP_06316804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911302|ref|ZP_06319104.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914471|ref|ZP_06322257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919440|ref|ZP_06327175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924817|ref|ZP_06332483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770739|ref|ZP_06343631.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958426|ref|ZP_06375877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503549|ref|ZP_06667396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510564|ref|ZP_06669269.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537106|ref|ZP_06671786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428246|ref|ZP_06820875.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590791|ref|ZP_06949429.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56748680|sp|Q6GG31|CLPX_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49242046|emb|CAG40745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271484|gb|EEV03630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275297|gb|EEV06784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278038|gb|EEV08686.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281866|gb|EEV12003.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284040|gb|EEV14163.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M876]
 gi|257845712|gb|EEV69744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9635]
 gi|282313183|gb|EFB43579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317250|gb|EFB47624.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321652|gb|EFB51977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324997|gb|EFB55307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327250|gb|EFB57545.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331363|gb|EFB60877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595864|gb|EFC00828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C160]
 gi|283460886|gb|EFC07976.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470942|emb|CAQ50153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790575|gb|EFC29392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919951|gb|EFD97019.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095215|gb|EFE25480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466455|gb|EFF08976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127646|gb|EFG57283.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575677|gb|EFH94393.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694945|gb|ADI98167.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|312437867|gb|ADQ76938.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195577|gb|EFU25964.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|323440781|gb|EGA98490.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus O11]
 gi|323442936|gb|EGB00559.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus O46]
          Length = 420

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|312796429|ref|YP_004029351.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
 gi|312168204|emb|CBW75207.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
          Length = 410

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 68  SPLEIRQILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQDRDAGEVLRDVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPTALQAVAK 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L++++E+ L D+ +    L+
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYELPTLK 391


>gi|91787907|ref|YP_548859.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas sp.
           JS666]
 gi|123165007|sp|Q12BY1|CLPX_POLSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91697132|gb|ABE43961.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           sp. JS666]
          Length = 421

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +     +    EL   NILL+GPTG 
Sbjct: 67  TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKEKAKKDDVELTKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLL 169



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFSGLEKVIENRTEASGIGFGALVKSKKTRSLTESFKEVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ ++ Q+ +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVATLAELTEDALVQILTEPKNAVVKQFSKLLSMEGVDLEIRPSALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386


>gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 415

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 60  TPQEICNVLDSYVIGQFHAKRVLSVAVHNHYKRLNHATKNNDVELAKSNILLVGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 120 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 172



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 173 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 232

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      +SR                             P DLL    
Sbjct: 233 DTTNILFICGGAFAGLEKIISRRGKGSSIGFSARVTGPDERRTGDILRGVEPEDLLKFGL 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT+ ++ ++ QY+ L + E + L  T D++ A++ 
Sbjct: 293 IPEFIGRLPVIATLEDLDEAALVQILTEPKNAIVKQYQRLFEMEDVKLTITLDALRAISR 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  +    L+  + VVI  E V
Sbjct: 353 KAIERKT-----GARGLRSIMEGILLDTMYDLPTLKGVEEVVIGPEVV 395


>gi|307265820|ref|ZP_07547371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919215|gb|EFN49438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 424

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R   +  P D+  EL   NILL+GPTG G
Sbjct: 63  PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L + +G+ L+F + ++  +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           D+A+   +     GAR L+ ++E ++ D+ +   +SD  EK ++ +
Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394


>gi|300173595|ref|YP_003772761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887974|emb|CBL91942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 418

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ DAK+ +A+A+ N ++R  +        EL   NI L+GPTG G
Sbjct: 67  TPHEIVAELNDYVIGQDDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSA 171



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 67/242 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 179 QHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELI 238

Query: 290 SINTDHILFIASGAF------------------------------------HVSRPAD-- 311
            ++T +ILFI  GAF                                    HV +P D  
Sbjct: 239 QVDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAIALESENILEHV-QPEDMT 297

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + ++L+F  D+++
Sbjct: 298 KFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTALLGLDDVVLEFQPDALE 357

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRL 421
           A+A++A+  ++     GAR L++++E  ++D+ +   S  D+ +    K  VID E   L
Sbjct: 358 AMAELAIKRHT-----GARGLRSIIELTMKDVMYDIPSRDDVSKVIITKASVIDGEQPEL 412

Query: 422 HI 423
            +
Sbjct: 413 QL 414


>gi|254247969|ref|ZP_04941290.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
 gi|124872745|gb|EAY64461.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
          Length = 390

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +   D +D  EL   NILL+GPTG G
Sbjct: 35  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 93

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 94  KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 135



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 148 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 207

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 208 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 267

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 268 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 327

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E+ L D+ +    ++  + VI  E V
Sbjct: 328 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 369


>gi|330972588|gb|EGH72654.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 427

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAKTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|317487861|ref|ZP_07946453.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325830652|ref|ZP_08164073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           sp. HGA1]
 gi|316912987|gb|EFV34504.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325487398|gb|EGC89840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           sp. HGA1]
          Length = 471

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+ +EL  +++GQ+ AKRA+++A+ N ++R  L AD  D   EL   NI+L+GPTG 
Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAA 211



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 60/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL +VEG+  SV  + G          I
Sbjct: 221 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHI 280

Query: 292 NTDHILFIASGAF---------------------------HVSR-------PADL----- 312
           +T +ILFI  GAF                           H          P DL     
Sbjct: 281 DTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKKHAEAELLARVLPEDLNKYGM 340

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++ D   ILT+ ++ L+ QY ++ + E  +L F  +++  +A 
Sbjct: 341 IPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKMFEFEDSVLTFEPEALKVIAH 400

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            AV   +     GAR L+++ ERVL+D+ +   DL E+
Sbjct: 401 EAVEHGT-----GARGLRSICERVLQDVMY---DLPEQ 430


>gi|260460896|ref|ZP_05809146.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|259033473|gb|EEW34734.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 424

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P D                   L
Sbjct: 240 DTANILFICGGAFAGLDKIISDRGRKTSIGFGAVVASPEDRRTGDVFRLVEPEDLLKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 300 IPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 360 RAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402


>gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
          Length = 416

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y++GQ DAK+ +++A+ N ++R +  A ++D  EL   NILL+GPTG GK
Sbjct: 64  PQEIKAALDDYVVGQDDAKKILSVAVYNHYKRIKYHALVKDDVELDKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 124 TLLAQTLARILKVPFAIADATTLTEAGYVGEDVENILVQLVQNA 167



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 66/238 (27%)

Query: 238 IQMVENY---------GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284
           +Q+V+N          GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++
Sbjct: 161 VQLVQNADYNLETAAKGIIYVDEIDKISRKSDSPSITRDVSGEGVQQALLKIIEGTVANI 220

Query: 285 STKYGS---------INTDHILFIASGAF------------------------------- 304
             K G          ++T +ILFI  GAF                               
Sbjct: 221 PPKGGRKHPQQEFIRLDTSNILFIVGGAFIGLDEMVKQRVQGSSMGFGATMRRKQDDNTD 280

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL+     PE  GR  V   L  LN+ D   IL + ++ LI QY+++ + E
Sbjct: 281 SLLKQVHPMDLIRFGLIPEFTGRISVITSLTELNEDDLMRILQEPKNALIKQYQKMFELE 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            + L FT++++ ALA  A+ L +     GAR L++VME ++ DI ++    ++ T  +
Sbjct: 341 NVELKFTQNALKALAARAIKLET-----GARGLRSVMESIMLDIMYTLPSTKDVTECV 393


>gi|269798317|ref|YP_003312217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294792181|ref|ZP_06757329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
 gi|294794046|ref|ZP_06759183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|269094946|gb|ACZ24937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294455616|gb|EFG23988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|294457411|gb|EFG25773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
          Length = 417

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A  +I R  R
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L FTED+++ +AD
Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L+ ++E+V++ + F    + E T  I
Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391


>gi|116747550|ref|YP_844237.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696614|gb|ABK15802.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobacter fumaroxidans MPOB]
          Length = 417

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R +L  D  D EL   NIL++GPTG GKT
Sbjct: 65  PAEIKAILDQYVIGQDRAKKILSVAVHNHYKRIELKIDKNDVELQKSNILMIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVSLIQAA 167



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 60/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          I
Sbjct: 177 GIVYIDEIDKIAKKSDSPSITRDVSGEGVQQALLKILEGTVANVPPKGGRKHPQQEFIKI 236

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T +ILFI  GAF+                                    +P DLL    
Sbjct: 237 DTTNILFICGGAFNYLETIIQSRVGVKGMGFGAEIRSKEDKSVGEILIKVQPEDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L + +   ILT+ ++ L+ QYK+L + E + L FTE  + A+A 
Sbjct: 297 IPEFVGRLPVIATLNELTEDELVSILTEPKNALVKQYKKLFELEDVRLRFTEGVLRAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
            A+   S     GAR L+++ME ++ DI +   S  ++QE
Sbjct: 357 EAIRRKS-----GARGLRSIMENIMLDIMYDLPSHPEIQE 391


>gi|15888589|ref|NP_354270.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|23813866|sp|Q8UFY5|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 425

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+++ME++L D  F    L+
Sbjct: 361 RAITRKT-----GARGLRSIMEKILLDTMFELPTLE 391


>gi|148259929|ref|YP_001234056.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum
           JF-5]
 gi|326403117|ref|YP_004283198.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
 gi|254763827|sp|A5FX05|CLPX_ACICJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146401610|gb|ABQ30137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidiphilium
           cryptum JF-5]
 gi|325049978|dbj|BAJ80316.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
          Length = 418

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D E+   NI+LVGPTG GK
Sbjct: 64  TPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 103/226 (45%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGADVRDPTEQRTGAILREVEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + EG+ L+FTED++  +A 
Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            A+   +     GAR L+++ME +L +  F    L   + VVI+ E
Sbjct: 357 RAIQRKT-----GARGLRSIMENILLETMFDLPGLDSVEEVVINGE 397


>gi|325292626|ref|YP_004278490.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
 gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
          Length = 425

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+++ME++L D  F    L+
Sbjct: 361 RAITRKT-----GARGLRSIMEKILLDTMFELPTLE 391


>gi|34557753|ref|NP_907568.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella
           succinogenes DSM 1740]
 gi|46576388|sp|Q7M8U5|CLPX2_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2
 gi|34483470|emb|CAE10468.1| PROTEASE CLPX [Wolinella succinogenes]
          Length = 397

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI   LD+Y+I Q+ AK A+++AL N ++R   P     EL   NILL+GP+G GKT 
Sbjct: 59  PQEIAQFLDQYVISQEKAKMALSVALYNHYKRISYPKHHHIELEKSNILLLGPSGSGKTL 118

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 119 LAKTLARVLNIPFAMSDATALTEAGYVGEDVESILSRLLHAA 160



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 50/212 (23%)

Query: 245 GIVFLDEFDKIVAR----DSGNGIGVSREGVQRDLLPLVEGSSV-----------STKYG 289
           GIV++DE DKI  +     SG  IG   EGVQ+ LL ++EG+SV           +T+  
Sbjct: 170 GIVYIDEIDKIAKKGESVQSGRDIG--GEGVQQGLLKILEGASVYVPLKGARKNSNTETV 227

Query: 290 SINTDHILFIASGAF-----------------HVSRPAD-----------LLPEIQGRFP 321
             +T  +LFI  GAF                 + S P             ++PE  GR P
Sbjct: 228 LFDTKDVLFICGGAFVGIKEERGEKRSGFLASNPSSPTQRTLRKQLLSYGMIPEFIGRIP 287

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           + + L+ LN      IL + + ++I QY+ L   +G+ L+FT++++ A+A  +++     
Sbjct: 288 LILELEPLNLESLVKILKEPKDSIIAQYQYLFSLDGVKLEFTDEALLAIAQKSLD----- 342

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            ++GAR L+ ++E +L  + F     +E T V
Sbjct: 343 EELGARGLRHILEEILMPLLFEIPSKEEVTQV 374


>gi|18310374|ref|NP_562308.1| ATP-dependent protease ATP-binding subunit [Clostridium perfringens
           str. 13]
 gi|110800496|ref|YP_696087.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           perfringens ATCC 13124]
 gi|168207807|ref|ZP_02633812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens E str. JGS1987]
 gi|168212103|ref|ZP_02637728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215326|ref|ZP_02640951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens CPE str. F4969]
 gi|168217823|ref|ZP_02643448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens NCTC 8239]
 gi|169342285|ref|ZP_02863363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens C str. JGS1495]
 gi|21263462|sp|Q8XKK2|CLPX_CLOPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123148746|sp|Q0TQK3|CLPX_CLOP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|18145054|dbj|BAB81098.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           perfringens str. 13]
 gi|110675143|gb|ABG84130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens ATCC 13124]
 gi|169299612|gb|EDS81671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens C str. JGS1495]
 gi|170660869|gb|EDT13552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens E str. JGS1987]
 gi|170709985|gb|EDT22167.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713288|gb|EDT25470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens CPE str. F4969]
 gi|182380170|gb|EDT77649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens NCTC 8239]
          Length = 435

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           NT +ILFI  GAF                            +V        P DLL    
Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE+++ A+AD
Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N  +     GAR L+ ++E  + DI F
Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y++GQ  AK+++A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 66  PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168


>gi|256827323|ref|YP_003151282.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Cryptobacterium curtum DSM 15641]
 gi|256583466|gb|ACU94600.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Cryptobacterium curtum DSM 15641]
          Length = 454

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+   L  +++GQ++AKRA+++A+ N ++R  L AD  D   EL   NILL+GPTG 
Sbjct: 97  TPHELYDRLSAFVVGQEEAKRALSVAVYNHYKRISLGADASDDDVELAKSNILLLGPTGS 156

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 157 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLITAA 202



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 99/222 (44%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG  +SV  + G          I
Sbjct: 212 GIVYIDEIDKIARKAENLSITRDVSGEGVQQSLLKIVEGCEASVPPQGGRKHPQQELIHI 271

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          V +                         P DL     
Sbjct: 272 DTTNILFILGGAFVGLTDIIAERVGKSGLGFNARLPQSKKHEDAELLRQVLPEDLNKFGM 331

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   LK L + D   ILT+  + L+ QY  + + E   L    D++ A+A 
Sbjct: 332 IPEFVGRIPVITRLKELTEEDLVRILTEPRNALVKQYTRMFEFEESELVVEPDALRAIAH 391

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+  N+     GAR L+++ E VL D+ +   D  E T V+
Sbjct: 392 KAIEHNT-----GARGLRSICENVLMDVMYELPDHTEPTRVV 428


>gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
 gi|149752861|gb|EDM62792.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
          Length = 419

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRVMSGKELGVELGKSNILMLGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++ G PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKIIQAA 169



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 178 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEMIQ 237

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             V R      P DL    
Sbjct: 238 IDTTNILFICGGAFEGIEKIVEKRIDQKSIGFNAEIAEKHEDDVDRLLQQILPQDLVKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L+K     ILT+ ++ L  QY+++++ +G+ L F + +++ +A
Sbjct: 298 LIPELVGRVPVTVALEMLDKDALVKILTEPKNALTKQYQKMLELDGVKLTFDKKALETIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + ++   +     GAR L+ +ME ++ DI + A SD   KT  I  + V+
Sbjct: 358 ETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKTCRITEDVVK 402


>gi|182627118|ref|ZP_02954836.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721]
 gi|177907507|gb|EDT70165.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721]
          Length = 435

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           NT +ILFI  GAF                            +V        P DLL    
Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE+++ A+AD
Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N  +     GAR L+ ++E  + DI F
Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y++GQ  AK+++A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 66  PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168


>gi|82751263|ref|YP_417004.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus RF122]
 gi|123547892|sp|Q2YTB5|CLPX_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82656794|emb|CAI81223.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus RF122]
          Length = 420

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEDVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEETLIDIMFDVPSNENVTKVVITAQTIN 398


>gi|331003244|ref|ZP_08326751.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412897|gb|EGG92277.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 465

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 57/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GIVF+DE DKI  + + N   VS E VQ++LL ++EGS V    G+           +NT
Sbjct: 232 GIVFIDEIDKIAKKKNTNTRDVSGESVQQELLKMLEGSKVEVPVGTNQKNVLAPMETVNT 291

Query: 294 DHILFIASGAFHVS---------------------------------------RPADLLP 314
           D+ILFI  GAF                                          R   ++P
Sbjct: 292 DNILFICGGAFPALDDIIKERLQKNTSMGFNSDLKGKYDNDSDLYSKVINEDIRKFGMIP 351

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+K  F+ IL + ++ ++ QYK L++ + + L F +D+++ +A+ A
Sbjct: 352 EFIGRLPVVCTLSKLDKEAFKKILIEPKNAILKQYKRLLELDEVELSFDDDAMEWIAEQA 411

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLHIG 424
           +       D GAR L++++E  + DI + +  D     V+I  EY+  H G
Sbjct: 412 MK-----KDTGARALRSIIEEFMLDIMYETPKDKNIGKVIITREYLE-HKG 456



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AKR +++A+ N ++R  L  D     + K NIL++GPTG GK
Sbjct: 119 APHKIKEMLDEYVIGQDQAKRIISVAVYNHYKRIFLDKDKEGIRIEKSNILMIGPTGSGK 178

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V        R + 
Sbjct: 179 TYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVE-------RAEC 231

Query: 127 SINAEERILDALVGKTATSNTREV 150
            I   + I    + K   +NTR+V
Sbjct: 232 GIVFIDEI--DKIAKKKNTNTRDV 253


>gi|34498012|ref|NP_902227.1| ATP-dependent protease ATP-binding subunit ClpX [Chromobacterium
           violaceum ATCC 12472]
 gi|46576429|sp|Q7NUZ0|CLPX_CHRVO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|34103867|gb|AAQ60227.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Chromobacterium violaceum ATCC 12472]
          Length = 426

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI ++LD+YIIGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 70  TPQEIRADLDQYIIGQDFAKKTLSVAVYNHYKRLYNKGGKDDVELAKSNILLIGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 130 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLL 170



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 58/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIQV 242

Query: 292 NTDHILFIASGAF--------------------HVS---------------RPAD----- 311
           +T +ILFI  GAF                     VS                P D     
Sbjct: 243 DTTNILFICGGAFDGLDKIIRQRSEKGGIGFGAEVSSKDDGKSLTKLFQEVEPQDIIRFG 302

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR PV   L+ L++     ILT  ++ LI QY++L   E + L+    ++  +A
Sbjct: 303 LIPELIGRLPVVATLEELDEEALVSILTQPKNALIKQYQKLFSLETVELEVRPSALRVIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             A+   +     GAR L++++ER L D  +    +Q
Sbjct: 363 KQALARKT-----GARGLRSILERALLDTMYELPSMQ 394


>gi|288574916|ref|ZP_06393273.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570657|gb|EFC92214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 431

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVGK 66
           PREI S LDRY+IGQ+ AKRAV++++ N +RR Q  +  +   ++   N+LL GPTG GK
Sbjct: 78  PREIKSYLDRYVIGQEKAKRAVSVSVYNHYRRIQNNIANESEVDIQKSNLLLAGPTGSGK 137

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 138 TLIAQTLAKKLNVPFAMADATVLTEAGYVGEDVENILVRLLQAA 181



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G         SI
Sbjct: 191 GIIYIDEMDKITRKSESTSITRDVSGEGVQQALLKILEGTLANIPPKGGRKHPYQEFISI 250

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI +GAF      V+R                             P DL+    
Sbjct: 251 DTTNILFICAGAFDGLEDIVARRMNRKMIGFGGEVHSKVSAKRFELLSHAEPDDLMSFGF 310

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PEI GR PV V +++L+      ILT+  + L+ QY++L++ E I L+FTE ++ A+A+
Sbjct: 311 IPEIIGRIPVLVPMETLDVDALVKILTEPRNALVRQYEKLLELENIDLEFTEGALKAVAE 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+  N+     GAR L+T+ME  + D+ +     ++  V I
Sbjct: 371 KAMIKNT-----GARGLRTIMEGRMLDLMYDIPSREDDVVKI 407


>gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 329

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQQ AK+ +++A+ N ++R + L  +   EL   NILL+GPTG GKT
Sbjct: 68  PHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 LLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 167


>gi|110803718|ref|YP_698703.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           perfringens SM101]
 gi|123341787|sp|Q0ST54|CLPX_CLOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110684219|gb|ABG87589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens SM101]
          Length = 435

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           NT +ILFI  GAF                            +V        P DLL    
Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE+++ A+AD
Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N  +     GAR L+ ++E  + DI F
Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y++GQ  AK+++A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 66  PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168


>gi|297250255|ref|ZP_06863929.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
 gi|296839417|gb|EFH23355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
          Length = 394

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P    + EL   NILL+GPTG GK
Sbjct: 46  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 105

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+
Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 146



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G         ++
Sbjct: 159 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 218

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 219 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 278

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E+++ ++A
Sbjct: 279 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 338

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
             A+   +     GAR L++++ER L D  +   DL+  K VV+
Sbjct: 339 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 377


>gi|332296031|ref|YP_004437954.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Thermodesulfobium narugense DSM 14796]
 gi|332179134|gb|AEE14823.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Thermodesulfobium narugense DSM 14796]
          Length = 413

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGV 64
           N  P+EI ++L  Y+IGQ++ K+ +++A+ N ++R  Q  +D   E++  N+LL+GPTG 
Sbjct: 61  NLKPKEIFAKLSEYVIGQENVKKVLSVAVYNHYKRIMQDKSDNDVEILKSNVLLIGPTGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 121 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENVLLRLIQAA 166



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 63/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 176 GIVYIDEIDKIGRKSENTSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 235

Query: 292 NTDHILFIASGAFH-----------------VSR----------------------PADL 312
           NT++ILFI  G+F                  +S+                      P DL
Sbjct: 236 NTENILFICGGSFEKIEEKVYSRIGKKNIGFISKSKIDREIKEEEEKWKILQENILPEDL 295

Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +     PE+ GR P+   L  L++   + ILT+ ++ ++ QYK+L++ + I L+FTE+S+
Sbjct: 296 IHFGLIPELVGRLPIIAVLSPLDEVLLKKILTEPKNAILKQYKKLLEMDNITLNFTEESL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419
           D +   A+  N+     GAR L+ +ME ++ D+ F +A   Q  T+ ID ++V
Sbjct: 356 DYIVKEAIKRNT-----GARGLRAIMETIMLDVMFDTALFAQNGTLEIDGKFV 403


>gi|163743917|ref|ZP_02151287.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161382762|gb|EDQ07161.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 408

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVRDDSDAGVGETFKDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFTE+++ ++A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
            A+   +     GAR L++++E +L D  F     D  EK VV
Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMDSVEKVVV 396


>gi|288905456|ref|YP_003430678.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus UCN34]
 gi|325978446|ref|YP_004288162.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732182|emb|CBI13747.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus UCN34]
 gi|325178374|emb|CBZ48418.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 409

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ LD Y++GQ  AKRA+A+A+ N ++R    A+ R+E    L   NIL++GPTG 
Sbjct: 64  PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     +E T V
Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKV 391


>gi|315637948|ref|ZP_07893134.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           upsaliensis JV21]
 gi|315481983|gb|EFU72601.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           upsaliensis JV21]
          Length = 409

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           N +P+ + + LDRY+IGQ  AK+  ++ + N ++R    ADL D   EL   NILLVGPT
Sbjct: 62  NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRL-FRADLEDDDTELFKSNILLVGPT 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A N V  +++
Sbjct: 121 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDVERAQK 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 53/223 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 178 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 237

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 238 DTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDDSGEKDKDLLEKIEPDDLVHFGLIPEL 297

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  +   L  L++ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 298 IGRLHIIASLNELDEDDMVRILTEPKNAIIKQYQKLFAIDGVNLKFDEDALRAIAKLALE 357

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +     GAR L++++E ++ D+ F   + ++  +VI  E V
Sbjct: 358 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVV 395


>gi|254785726|ref|YP_003073155.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter
           turnerae T7901]
 gi|259491270|sp|C5BTX7|CLPX_TERTT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237687270|gb|ACR14534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Teredinibacter turnerae T7901]
          Length = 429

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P +I + LD Y+IGQQDAK+ +A+A+ N ++R ++    +     EL   NILLVGPTG 
Sbjct: 69  PIDISATLDEYVIGQQDAKKVLAVAVYNHYKRLRVGDKKKGKDEVELGKSNILLVGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 GKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 171



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAF-----------------------------HVSR------PADL---- 312
           +T +ILFI  GAF                             +V        P DL    
Sbjct: 244 DTSNILFICGGAFAGLDKIIRDRSEKGGIGFSAEVKSKDGSKNVGETLKDLEPEDLVRYG 303

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+K     IL + +++L+ QY +L + E + +DF  D+++A+A
Sbjct: 304 LIPEFVGRLPVIATLDELDKEALVTILREPKNSLVKQYAKLFEMENVEVDFRADALEAVA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+     V   GAR L+++ME VL D  +
Sbjct: 364 EKAM-----VRKTGARGLRSIMENVLLDTMY 389


>gi|225175199|ref|ZP_03729195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169375|gb|EEG78173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter
           alkaliphilus AHT 1]
          Length = 420

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 5/106 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
            P EI   LD+YIIGQ +AK+++A+A+ N ++R   +Q P D+  E+   NI L+GPTGV
Sbjct: 63  KPTEIKDILDQYIIGQDEAKKSLAVAVYNHYKRINTEQKPDDV--EIQKSNIALIGPTGV 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFMQI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DL+   
Sbjct: 236 DTTNILFICGGAFDGIEKLIQDRIGKKGIGFGAEVAAKQDGNIGEILRHV-LPQDLIKYG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L +L++     ILT+  + L  QY++L + + + L+F + +++ +A
Sbjct: 295 LIPEFVGRVPVVATLDALDEEALVRILTEPRNALTKQYQKLFELDCVNLEFKDGTLEIIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+  N+     GAR L+ ++E +L D+ +
Sbjct: 355 EEAIRRNT-----GARGLRAILEGILLDVMY 380


>gi|91775763|ref|YP_545519.1| ATP-dependent protease ATP-binding subunit [Methylobacillus
           flagellatus KT]
 gi|122985527|sp|Q1H1F9|CLPX_METFK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91709750|gb|ABE49678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacillus flagellatus KT]
          Length = 421

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R +      D E+   NIL++GPTG GK
Sbjct: 65  TPKEICAILDQYVIGQTQAKKNLAVAVYNHYKRLEQGGQKDDVEIAKSNILVIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LARL   PF+  + T  TE GYVG +VE I++ L+      V +++R
Sbjct: 125 TLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAQR 177



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 62/237 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 237

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313
           +T +ILFI  GAF                                 V R   P DL+   
Sbjct: 238 DTTNILFICGGAFDGLEKIIRRRSEKGGIGFGAEVKSKEDARAIGEVLRDVEPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F E ++  +A
Sbjct: 298 LIPEFVGRLPAIATLESLDEDALVTILVEPKNALTKQYIKLFKMEGVDLEFREAALRMIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
             A+   +     GAR L+++ME  L +I +    +   + VV+D   ++   GD P
Sbjct: 358 KKALERKT-----GARGLRSIMEHALLEIMYDLPSIPNLRKVVVDEGVIK---GDSP 406


>gi|242775288|ref|XP_002478613.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722232|gb|EED21650.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 621

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 195/485 (40%), Gaps = 102/485 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRW---------------------RRQQLPA 45
            +PR +   LD+Y++GQ  AK+ +++A+ N +                     RR+ + A
Sbjct: 90  LTPRMLKQYLDQYVVGQDRAKKILSVAVYNHYQRIMELQRQEEAAAEAMAQKERREAMEA 149

Query: 46  DLRD--------------------------------ELMPKNILLVGPTGVGKTAISRRL 73
              D                                +L   NILL+GP+GVGKT +++ L
Sbjct: 150 HPLDSHQRTIHIGSPMQDMIESRLGRSSSFTDTSMTQLEKSNILLLGPSGVGKTLMAKTL 209

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           AR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++  ++
Sbjct: 210 ARVLDVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEKAERGII----CLDEVDK 265

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           I  A V      +   V +  L+  E +  ++ ++    SS  +    PG    G    S
Sbjct: 266 IATARVSHGKDVSGEGVQQALLKIVEGTTIQVQVKPEKNSSRPAG-GAPGSFPPGTAPGS 324

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-------------IDMDTVHRDSIQM 240
              S    SG         QK   E+    +D +             I MD + + S+  
Sbjct: 325 GFNSSSTASGPPP------QKG--EVYNVRTDNILFIFSGAFVGLNKIIMDRISKSSMGF 376

Query: 241 VENYGIVFLDEFDKIVARDSGN------GIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +      +   +   ++D+ N        G   E + +  LP    ++  T       +
Sbjct: 377 GQPVRASSISSGNGSSSQDASNETPIPIAPGSEEEALYKKYLPFFTSATPLTS----QEE 432

Query: 295 HILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I F       +S PADL     +PE+ GR PV   L SL+ S    ILT+  ++LI QY
Sbjct: 433 PIYF---NPLDLSTPADLQKYGFIPELVGRIPVTTALSSLSHSLLLRILTEPRNSLITQY 489

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L    GI L FT  ++  +A  A+ + +     GAR L+T +E +L D  F A     
Sbjct: 490 ETLFDLSGIKLSFTTPALHKIASNALTMGT-----GARALRTELETILSDAMFEAPGSSV 544

Query: 410 KTVVI 414
           K V++
Sbjct: 545 KFVLV 549


>gi|311064595|ref|YP_003971320.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           bifidum PRL2010]
 gi|310866914|gb|ADP36283.1| ClpX ATP-dependent Clp protease ATP-binding subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 437

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 60/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254

Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311
             +I+T  ILFI  GAF                        H  +P +            
Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   L  L ++D   ILT+ ++ L+ QY+++   +G+ L FTE +++A
Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLVFTEQAVNA 374

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A  A+   +     GAR L++++E+ LE+  F    + + + V++DA  VR
Sbjct: 375 IATTAITRGT-----GARGLRSIIEKTLEETMFELPGMDDVQQVIVDAASVR 421



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 26/126 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------------ 44
           P EI + LDRY+IGQ  AKR +++A+ N ++R  +                         
Sbjct: 65  PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDPL 124

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           AD+  E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++
Sbjct: 125 ADV--EVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182

Query: 105 DLVDVA 110
            L+  A
Sbjct: 183 RLISAA 188


>gi|306833689|ref|ZP_07466816.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis
           ATCC 700338]
 gi|304424459|gb|EFM27598.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis
           ATCC 700338]
          Length = 409

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ LD Y++GQ  AKRA+A+A+ N ++R    A+ R+E    L   NIL++GPTG 
Sbjct: 64  PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     +E T V
Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKV 391


>gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|8134368|sp|Q9X5N1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus]
 gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 427

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 68  PSEIKAVLDEYVIGQERAKKTLSVAVHNHYKRIESKVAMEDVELQKSNILLLGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 179



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 67/239 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 180 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 240 DTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVE-PEDLLKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L+ L+++    IL   ++ L  QY++L + +G+ L FT+ ++ A+A
Sbjct: 299 MIPEFIGRLPIITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--------LQEKTVVIDAEYVRLH 422
           + A+   +     GAR L++++E  + D+ +            + E+ ++  +E V LH
Sbjct: 359 NEAIRRKA-----GARGLRSILESAMLDVMYEIPSRKTAREVLISEEVILKKSEPVVLH 412


>gi|315130694|gb|EFT86680.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS03]
          Length = 398

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +   +     GAR L++++E  L DI F     +  T VVI A+ + 
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIE 398


>gi|295109357|emb|CBL23310.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           obeum A2-162]
          Length = 437

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASRNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 57/212 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 177 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236

Query: 290 SINTDHILFIASGAFH--------------------VS--------------RPAD---- 311
            I+T +ILFI  GAF                     VS               P D    
Sbjct: 237 QIDTTNILFICGGAFDGIEKTIEARQDTKSIGFGADVSVQEERNIGEVLKDVMPEDFIKY 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+ V L  L++     IL + +++L  QY +L + +G+ L+F ED++  +
Sbjct: 297 GLIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFEEDALKEV 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  ++   +     GAR L+++ME+ L D+ +
Sbjct: 357 ARKSLERKT-----GARGLRSIMEKSLMDLMY 383


>gi|302342889|ref|YP_003807418.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
 gi|301639502|gb|ADK84824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
          Length = 417

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI + +D Y++ Q+ AK+ +A+A+ N ++R    AD+   EL   NILL+GPTG GKT
Sbjct: 65  PREIKAIIDDYVVEQERAKKILAVAVHNHYKRIDAKADMGGVELQKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  ++R
Sbjct: 125 LLAQTLARIINVPFTIADATTLTEAGYVGEDVENIILNLLQAADYDVERAQR 176



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 58/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFVKV 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                      RP DL+   
Sbjct: 237 DTTNILFICGGAFVGLDKIISNRIGAKSMGFTAEVKERKEETPLGDTLAKCRPEDLIKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L++     ILT+ ++ L+ QY++L + EG+ L FT+++  A+A
Sbjct: 297 LIPEFVGRLPVAATLDELSEDALIRILTEPKNALVKQYQKLFEFEGVDLKFTDEAYKAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             A++  S     GAR L++++E  + DI +    L+
Sbjct: 357 AEAISRKS-----GARGLRSILEAAMLDIMYDLPSLK 388


>gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
           vitis S4]
 gi|254763828|sp|B9JVD6|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 425

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQRQAKKILSVAVHNHYKRLSHASKGGDVELAKSNILLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVVSPEDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L+++ME++L D  F   +L+  + VVI  E VR
Sbjct: 361 KAITRKT-----GARGLRSIMEKILLDTMFELPELEGVREVVISDEVVR 404


>gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1]
 gi|123162493|sp|Q11J59|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans
           sp. BNC1]
          Length = 424

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEIMEVLDDYVIGQTYAKRVLSVAVHNHYKRLAHAGKNADVELSKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T  ILFI  GAF                     VS P D                   L
Sbjct: 240 DTSSILFICGGAFAGLEKIISDRGKKTSIGFGASVSSPEDRRAGELLRQVEPEDLLKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 300 IPEFVGRLPILATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAIAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+++ME +L D  F    L+
Sbjct: 360 KAIERKT-----GARGLRSIMEAILLDTMFELPALE 390


>gi|260596810|ref|YP_003209381.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           turicensis z3032]
 gi|260215987|emb|CBA28640.1| ATP-dependent Clp protease ATP-binding subunit clpX [Cronobacter
           turicensis z3032]
          Length = 424

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    + E + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMDEVEKVVID 399


>gi|315499704|ref|YP_004088507.1| ATP-dependent clp protease, ATP-binding subunit clpx [Asticcacaulis
           excentricus CB 48]
 gi|315417716|gb|ADU14356.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           excentricus CB 48]
          Length = 419

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQAQAKKVLSVAVHNHYKRLNHAAKGNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  H   P DL+    
Sbjct: 238 DTTNILFICGGAFAGLEKIISGRGKGTSIGFGATVKDPEERRLGEVLHQVEPDDLMKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT+ ++ L+ QY  L + E + L FT++++ A+A 
Sbjct: 298 IPEFIGRLPVLATLEDLDEATLVKILTEPKNALVKQYARLFEMENVTLTFTDEALFAVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+     V   GAR L++++E +L D  +   ++Q  + VVI+AE V
Sbjct: 358 KAI-----VRKTGARGLRSILEGILLDTMYELPNMQGVEEVVINAEVV 400


>gi|238018908|ref|ZP_04599334.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
 gi|237864392|gb|EEP65682.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
          Length = 410

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 55  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 114

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A  +I R  R
Sbjct: 115 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 167



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 57/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 168 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 227

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 228 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 287

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L FTED+++ +AD
Sbjct: 288 IPEFIGRLPVVVTLDQLDREALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 347

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            A+   +     GAR L+ ++E+V++ + F    + E
Sbjct: 348 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPE 379


>gi|331086219|ref|ZP_08335301.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406378|gb|EGG85892.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 425

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +A+++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIP 235

Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312
           I+T +ILFI  GAF        SR                            P DL    
Sbjct: 236 IDTTNILFICGGAFEGIEKIIESRVDKKSIGFNSKMTGANEHDKDKLLSQVLPQDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F ED++  +A
Sbjct: 296 LIPELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            ++++  +     GAR L+ ++E V+ D  F   SD + KT  I    V+
Sbjct: 356 KISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 400


>gi|226227817|ref|YP_002761923.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
 gi|226091008|dbj|BAH39453.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
          Length = 420

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +PREI + LD+Y+IGQ  AK+A+++A+ N ++R    +  R+   EL   NILL+GPTGV
Sbjct: 59  TPREIKNTLDQYVIGQDLAKKALSVAVYNHYKRINASSSAREDDVELDKSNILLIGPTGV 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+      V E  R
Sbjct: 119 GKTLLAQTLARILDVPFTIADATTLTEAGYVGEDVENILVRLLQAGDFNVAECER 173



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 93/215 (43%), Gaps = 62/215 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            +Y  I
Sbjct: 174 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEYIQI 233

Query: 292 NTDHILFIASGAFH--------------------------VS-------------RPADL 312
           NT  ILFI  GAF                           VS              P DL
Sbjct: 234 NTKDILFICGGAFDGLEKIIEARTGRRMIGFGDEKPDTKVVSIGKTTPKTPFAEVEPDDL 293

Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           L     PE+ GR PV V L++L++     IL + ++ L  QY+ L   E + + F E ++
Sbjct: 294 LRFGIIPELVGRLPVCVPLEALDEEALMSILKEPKNALTKQYQRLFDLEEVKITFEESAL 353

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+A  A+   +     GAR L+ ++E  L D  F
Sbjct: 354 RAVAAKALRRGT-----GARGLRAILEETLLDTMF 383


>gi|156935009|ref|YP_001438925.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           sakazakii ATCC BAA-894]
 gi|166214776|sp|A7MFI7|CLPX_ENTS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|156533263|gb|ABU78089.1| hypothetical protein ESA_02860 [Cronobacter sakazakii ATCC BAA-894]
          Length = 424

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    ++E + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEEVEKVVID 399


>gi|306831538|ref|ZP_07464696.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426323|gb|EFM29437.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 409

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ LD Y++GQ  AKRA+A+A+ N ++R    A+ R+E    L   NIL++GPTG 
Sbjct: 64  PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFCQNNRKIDENASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +        IGAR L++++E  + DI F     +E T V
Sbjct: 358 IERK-----IGARGLRSIIEETMMDIMFEIPSQEEVTKV 391


>gi|282860205|ref|ZP_06269279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           bivia JCVIHMP010]
 gi|282587026|gb|EFB92257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           bivia JCVIHMP010]
          Length = 411

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++++ N ++R QQ   D   E+   NI++VG TG GKT
Sbjct: 64  PQEIKQYLDEYIIGQDEAKRYLSVSVYNHYKRLQQEKGDDGVEIEKSNIIMVGSTGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L L+EG+ V+             Y  +
Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGTMVNVPPKGGRKHPDQDYIHV 235

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 236 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKKDLMKYVLPQDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+K   R IL   +++++ QY +L   +GI L FTE+++D + D 
Sbjct: 296 PEIIGRLPVLTYLNPLDKEALRRILVQPKNSIVKQYIKLFAMDGIKLSFTEEALDYIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           AV        +GAR L++++E V+ D  F
Sbjct: 356 AVEYK-----LGARGLRSIVESVMMDAMF 379


>gi|254441479|ref|ZP_05054972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 307]
 gi|198251557|gb|EDY75872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 307]
          Length = 422

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AKR +++A+ N ++R    AD  D EL   NI+L+GPTG GK
Sbjct: 65  TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNIMLIGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILF+  GAF                                  +   P DLL    
Sbjct: 237 DTTNILFVCGGAFAGLDKIIAQRGKGAGMGFGAEVRGPDERGVGEIFNDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL+  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDALVAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 399


>gi|51246389|ref|YP_066273.1| ATP-dependent protease ATP-binding subunit [Desulfotalea
           psychrophila LSv54]
 gi|61211470|sp|Q6AK60|CLPX_DESPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50877426|emb|CAG37266.1| probable ATP-dependent Clp protease, ATPase subunit (ClpX)
           [Desulfotalea psychrophila LSv54]
          Length = 419

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+++ + LD Y+IGQ  AK+ +A+A+ N ++R   P +L D   EL   NI+L+GPTG G
Sbjct: 66  PKDVKAHLDDYVIGQAYAKKVLAVAVHNHYKRIDAPVELLDDSVELQKSNIILLGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 126 KTLVAQTLAKILNVPFSVADATTLTEAGYVGDDVENILVSLLQAADYDVEKAQR 179



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++EG+  SV  K G          I
Sbjct: 180 GIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQELVKI 239

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                    RP DLL     
Sbjct: 240 DTTNILFICGGAFVGLGRVVKRRAGKKSIGFSADLSADKRSESELLEAVRPEDLLKFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L+ L++ D   IL + ++ L  Q+++L + EG+ L FTE S+ A+A  
Sbjct: 300 PELVGRLPVIASLRELSEDDLVRILREPKNALTRQFEKLFQFEGVKLTFTEGSLAAVAKK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   S     GAR L++V+E  + DI +   S S++QE    + V+ D EY  L  G+
Sbjct: 360 AIARKS-----GARGLRSVLEEAMLDIMYDIPSLSNVQECIVNEQVITDGEYPVLLYGE 413


>gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
 gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
          Length = 421

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRGVLDDYVIGQGRAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 THLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKAENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGRSTSIGFAASVMAPEDRKTGELFAELEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL + ++ L+ QY+ L + E + L F ED++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVSILREPKNALVAQYQRLFEMENVELTFHEDALKAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L +  +    L+  K VVI AE V
Sbjct: 358 KAIERKT-----GARGLRSILEAILLETMYELPGLKGVKEVVISAEVV 400


>gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella
           bacilliformis KC583]
 gi|166214756|sp|A1USA8|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           bacilliformis KC583]
          Length = 424

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ+ AKR +++A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 67  TPQEIIEVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNNAIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H   P DL     
Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATIKAPDERRVGEIFHDLEPEDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+      IL+  ++ L+ QY+ L + E + L F ED++ A+A+
Sbjct: 300 IPEFIGRLPIIATLEDLDIDALVRILSQPKNALVKQYQHLFEMENVELTFHEDALRAIAN 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME++L D  F    L+  + VVI ++ V
Sbjct: 360 KAIERKT-----GARGLRSIMEKILLDTMFELPALEGVQKVVISSDVV 402


>gi|268316268|ref|YP_003289987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus
           marinus DSM 4252]
 gi|262333802|gb|ACY47599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus
           marinus DSM 4252]
          Length = 419

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPT 62
            +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R   Q   +D  D EL   NILL+GPT
Sbjct: 65  LTPPEIKAALDEYVIGQERAKKTLAVAVYNHYKRIDHQHYLSDYDDVELEKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 GTGKTLLARTLARILDVPFSISDATALTEAGYVGEDVESILAHLLHAA 172



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 111/236 (47%), Gaps = 60/236 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+   V  K G         +I
Sbjct: 182 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTIAGVPPKGGRKHPEQNLINI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  +   P DLL    
Sbjct: 242 DTRNILFICGGAFEGLEEIIARRLSTSSIGFFASGGKRVDPKDPRIFYYVEPDDLLKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L++L+    R ILT+ ++ L+ QY++L   +GI L F E+++DA+ +
Sbjct: 302 IPEFIGRLPVITPLEALSDEALRSILTEPKNALVRQYQKLFAMDGIELIFEEEALDAIVE 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFP 427
            A  L +     GAR L+ VME V+ DI F+   + +  V  I A  VR   G+ P
Sbjct: 362 RARELGT-----GARGLRAVMEEVMLDIMFNIHTMPDVGVCRITAATVRY--GEAP 410


>gi|313887830|ref|ZP_07821510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846173|gb|EFR33554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 6/106 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI   LD+Y++ Q+DAKRA+A+A+ N ++R    + + +D+  EL   NIL++GPTG 
Sbjct: 60  PAEIKEILDQYVVKQEDAKRALAVAVYNHYKRISSTRTVSSDI--ELQKSNILMIGPTGS 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 118 GKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENIILKLIQNA 163



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 60/237 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+             S ++  +
Sbjct: 173 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPSQEFIQV 232

Query: 292 NTDHILFIASGAFH---------------------VSRPAD-----------------LL 313
           +T +ILFI  GAF                      V + A                  L+
Sbjct: 233 DTSNILFIVGGAFDGIDKIIENRTAKSSMGFGSEIVDKKAKQENILQKVETEDLLKFGLI 292

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV + L+ L++     ILT  ++ L+ QYKEL+K + + L F +++++ +A  
Sbjct: 293 PELIGRLPVTITLEELDEEALVEILTKPKNALVKQYKELLKFDDVDLIFDDEALNYIARK 352

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSE 429
           A+   +     GAR L+ V+E  + ++ +      + K V I  E V    G  P+E
Sbjct: 353 AIEKKA-----GARGLRGVIENTIMNVMYEIPSRDDIKAVKITKESVE---GTAPAE 401


>gi|27262354|gb|AAN87458.1| ATP-dependent clp protease ATP-binding subunit ClpX [Heliobacillus
           mobilis]
          Length = 420

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ  AK+A+++A+ N ++R  L + + D EL   NI+++GPTG GK
Sbjct: 64  KPKEIREILDQYVIGQDQAKKALSVAVYNHYKRINLGSKIDDIELQKSNIVMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 236

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DLL    
Sbjct: 237 DTTNILFICGGAFDGIDKLIMNRVGKKAMGFNADIKGKQDKNIGEVLRDILPGDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT+ ++ LI QY++  + + + L+F ++++ A+A 
Sbjct: 297 IPEFVGRLPVIVTLDALDEDALVRILTEPKNALIKQYQKFFELDQVNLEFQDEALRAIAH 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E V+ D+ F
Sbjct: 357 EAIKRNT-----GARGLRAIIEEVMLDVMF 381


>gi|197302445|ref|ZP_03167500.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
 gi|197298343|gb|EDY32888.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
          Length = 423

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD+Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDQYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 57/212 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                    + P DL    
Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRIDRKSIGFNAEIATKHEYDMDVLLQEALPQDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L  L++     ILT+ +S ++ QY++L++ +G+ L+F +D++  +A
Sbjct: 296 LIPELVGRLPVTVSLDLLDRDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDALLEIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           D  +   +     GAR L+ +ME ++ D  F+
Sbjct: 356 DTTLKRKT-----GARGLRAIMENIMMDTMFT 382


>gi|260432981|ref|ZP_05786952.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416809|gb|EEX10068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 422

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+  +D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQARAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDERGVGEIFQDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + LDFTED++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELENVELDFTEDALKAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTKVVVNEEAV 401


>gi|329946416|ref|ZP_08293983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328527392|gb|EGF54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 440

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPTG
Sbjct: 71  PQEIFDFLNQYVIGQESAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 130

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 131 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 186



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G            I
Sbjct: 187 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 246

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFIA+GAF                                        RP DL  
Sbjct: 247 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLDGSTSSKDVFTSPVRPEDLHK 306

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ T+ +I+A
Sbjct: 307 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 366

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 367 VASLALERKT-----GARGLTSIVEEVLGQSMFEVPSLPEVGRVVVDADAVR 413


>gi|159039406|ref|YP_001538659.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
 gi|189044146|sp|A8M1K7|CLPX_SALAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157918241|gb|ABV99668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
          Length = 429

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63
           P EI   LD Y++GQ  AK+A+A+A+ N ++R Q      P     EL   NILL+GPTG
Sbjct: 64  PMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEAVGAPGTDSVELAKSNILLLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 CGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313
           +T ++LFI  GAF                        VS            P D+L    
Sbjct: 240 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMPEDMLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F + +++A+AD
Sbjct: 300 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAVAD 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 360 QAM-LRGT----GARGLRAIMEEVLLSVMY 384


>gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
 gi|123077615|sp|Q1GGF7|CLPX_SILST RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|99037647|gb|ABF64259.1| ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
          Length = 421

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+   D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAGVGETFRDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT++++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMESVTKVVVNEEAV 401


>gi|145596009|ref|YP_001160306.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
 gi|189044149|sp|A4XAH9|CLPX_SALTO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145305346|gb|ABP55928.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
          Length = 429

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63
           P EI   LD Y++GQ  AK+A+A+A+ N ++R Q      P+    EL   NILL+GPTG
Sbjct: 64  PMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEATGAPSADSVELAKSNILLLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 CGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313
           +T ++LFI  GAF                        VS            P D+L    
Sbjct: 240 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMPEDMLKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV  +++SL++     ILT+  + L+ QY+ L + +G+ L+F + +++A+AD
Sbjct: 300 IPEFIGRLPVITNVRSLDRPALVQILTEPRNALVRQYQRLFELDGVELEFEQSALEAIAD 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL  + +   S+     V+I+ E V
Sbjct: 360 QAM-LRGT----GARGLRAIMEEVLLSVMYEVPSNPDAARVLINREVV 402


>gi|209521457|ref|ZP_03270165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
 gi|209498113|gb|EDZ98260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
          Length = 423

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPGALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397


>gi|307566219|ref|ZP_07628667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           amnii CRIS 21A-A]
 gi|307345077|gb|EFN90466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           amnii CRIS 21A-A]
          Length = 410

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ +AKR +++++ N ++R QQ   D   E+   NI++VG TG GKT
Sbjct: 66  PQEIKKYLDEYIIGQDEAKRYLSVSVYNHYKRLQQQKKDDGVEIEKSNIIMVGSTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA
Sbjct: 126 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L L+EG+ V+             Y  +
Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGTIVNVPPKGGRKHPDQDYIHV 237

Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313
           +T +ILFI  GAF             HV                      P DL     +
Sbjct: 238 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKEDLMKYVLPQDLKSFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  LN+   R IL   +++++ QY +L   +GI L FT+ ++D + D 
Sbjct: 298 PEIIGRLPVLTYLTPLNRDALRRILVQPKNSIVKQYIKLFDMDGIKLSFTDSALDYIVDK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           AV        +GAR L++++E V+ D  F       K   +  +YV
Sbjct: 358 AVEYK-----LGARGLRSIVESVMMDAMFEIPSQNIKNFEVTKDYV 398


>gi|295676518|ref|YP_003605042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
 gi|295436361|gb|ADG15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
          Length = 423

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397


>gi|227529061|ref|ZP_03959110.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351073|gb|EEJ41364.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis
           ATCC 49540]
          Length = 417

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI+S+LD Y+IGQ DAK+ +++A+ N ++R       D  D EL   NI ++GPTG 
Sbjct: 63  TPEEIMSKLDDYVIGQSDAKKTLSVAVYNHYKRVNAMTTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTNSDEAANVTEKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  L FT+ ++ A+A
Sbjct: 297 LIPEFIGRLPVMTALQKLDEDDLVRILTEPKNALVKQYQELIRLDGSQLTFTDGALRAMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
            +A+  N+     GAR L++++E V+ D+ F   S  D+++  V+ID   V  H
Sbjct: 357 QLAIKRNT-----GARGLRSIIEGVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403


>gi|88607602|ref|YP_505536.1| ATP-dependent protease ATP-binding subunit [Anaplasma
           phagocytophilum HZ]
 gi|123494661|sp|Q2GJB5|CLPX_ANAPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88598665|gb|ABD44135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaplasma
           phagocytophilum HZ]
          Length = 415

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           F+  PREI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPTG
Sbjct: 56  FDLKPREIKEVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +TD+ILFI  GAF                                   + P DL     +
Sbjct: 232 STDNILFIFGGAFDGLEKIIEARNRGSSMGFEANVQSMVSPTKDVLSYAEPEDLVKFGLI 291

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L+++    +L + +++L+ QY +L + + + L F +D++ A+A  
Sbjct: 292 PEFIGRIPVITSLGKLDENTLFRVLVEPKNSLVKQYAKLFEMDNLELKFDDDALMAIARK 351

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           AV+ N+     GAR L+ +ME +L D  F       E  V I  E V
Sbjct: 352 AVDRNT-----GARGLRAIMESLLLDFMFDPQGCAHEGKVSISKEMV 393


>gi|110834072|ref|YP_692931.1| ATP-dependent protease ATP-binding subunit ClpX [Alcanivorax
           borkumensis SK2]
 gi|123345580|sp|Q0VQ89|CLPX_ALCBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110647183|emb|CAL16659.1| ATP-dependent Clp protease, ATP-binding subunitClpX [Alcanivorax
           borkumensis SK2]
          Length = 426

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +     RDE  L   NILL+GPTG GK
Sbjct: 68  PNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T ++LFI  GAF     V R                               P DL    
Sbjct: 241 DTSNMLFICGGAFAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLGELLVDVEPEDLVKYG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+  + L  QY  L + EG+ LDF ED++ A+A
Sbjct: 301 LIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQYARLFEMEGVELDFREDALKAIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+     V   GAR L++++E VL D  +    ++    VVID+  ++
Sbjct: 361 NKAM-----VRKTGARGLRSILESVLLDTMYQVPSMESVAKVVIDSPTIK 405


>gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|123773227|sp|Q3SRD3|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255]
          Length = 424

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|333029343|ref|ZP_08457404.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
 gi|332739940|gb|EGJ70422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
          Length = 413

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS ++            K   +
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIINVPPQGGRKHPDQKMIPV 239

Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313
           NT +ILFI  GAF             HV     SR               P DL     +
Sbjct: 240 NTKNILFICGGAFDGIERRIAQRLNTHVVGYNASRDTAKVDMTNLIKYITPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I Q ++L++ +G+ L F ED  D + D 
Sbjct: 300 PEIIGRLPILTYLNPLDRDALRRILTEPKNSVIKQNQKLLQMDGVDLKFNEDVFDYIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E ++ D+ +    +  K   +  +Y +
Sbjct: 360 AIEFK-----LGARGLRSIVETIMIDVMYEVPSMDVKEYAVTLDYAK 401



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P E+   LD Y+IGQ DAKR +++A+ N ++R  Q  +D   E+   NI++VG TG GKT
Sbjct: 68  PSEVKQFLDDYVIGQDDAKRYLSVAVYNHYKRILQDNSDDEVEIEKSNIIMVGSTGTGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+    PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 128 LLARTIAKQLNVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 170


>gi|297616503|ref|YP_003701662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144340|gb|ADI01097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 417

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   L D EL   NIL++GPTG GKT
Sbjct: 65  PQEIKDILDQYVIGQEKAKKILAVAVYNHYKRINLGTKLDDVELQKSNILMLGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313
           +T +ILFI  GAF          V +                         P DLL    
Sbjct: 237 DTSNILFICGGAFEGIDKIIQNRVGQKSMGFGADIKTKKEKKIGEILEQILPQDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L++S    ILT+ ++ L+ QY++L   +G+ L+FT+D++ A+A+
Sbjct: 297 IPEFVGRVPIIVTLDALDESALVRILTEPKNALVRQYQKLFDMDGVNLEFTDDALKAIAE 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  ++     GAR L+ ++E V+ D+ +
Sbjct: 357 EAMRRST-----GARGLRAIVEDVMLDVMY 381


>gi|90021256|ref|YP_527083.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharophagus
           degradans 2-40]
 gi|123277147|sp|Q21KA8|CLPX_SACD2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89950856|gb|ABD80871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Saccharophagus degradans 2-40]
          Length = 431

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ+ AK+ +A+A+ N ++R ++    +     EL   NILLVGPTG
Sbjct: 68  TPQEISETLDEYVIGQKQAKKVLAVAVYNHYKRLRVGDKKKSKDDVELGKSNILLVGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 SGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 171



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T +ILFI  GAF     V R                               P DL    
Sbjct: 244 DTGNILFICGGAFAGLDKVIRDRSEKGGIGFSAEVKSKDSGKNVGETLRELEPEDLVRYG 303

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     IL + +++L+ QY +L + EG  +DF +D+++A+A
Sbjct: 304 LIPEFVGRLPVIATLDELDQDALVRILKEPKNSLVKQYSKLFEMEGSEVDFRDDALEAVA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+   +     GAR L+++ME VL D  +
Sbjct: 364 NKAMERKT-----GARGLRSIMENVLLDTMY 389


>gi|118579612|ref|YP_900862.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter
           propionicus DSM 2379]
 gi|166214798|sp|A1AN84|CLPX_PELPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118502322|gb|ABK98804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter
           propionicus DSM 2379]
          Length = 418

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ+ AK+ +++A+ N ++R +    P D+  E+   NILL+GPTG G
Sbjct: 66  PREIKDVLDEYVIGQEKAKKVLSVAVYNHYKRIETSNKPGDV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILSLLQAA 168



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++EG+  S+  K G          +
Sbjct: 178 GIIYIDEIDKIARKSESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFMKV 237

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V +              P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDSVIQQRIGMKSLGFGADVKKRAEKKLGELLLNVTPDDLLKYGY 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++     IL + +++L+ QY++L + E + L FT+ S+ A+A 
Sbjct: 298 IPEFIGRLPMLATLTELDEDAMVQILKEPKNSLVKQYQKLFELENVRLRFTDGSLVAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+  N+     GAR L++++E  + DI +   S    K VVI  E +
Sbjct: 358 EALKRNT-----GARGLRSILENSMLDIMYEVPSQPNVKEVVISEEVI 400


>gi|254492062|ref|ZP_05105238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxidans DMS010]
 gi|224462726|gb|EEF78999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxydans DMS010]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 5/103 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +PREI   LD Y+IGQ+ AKR +++A+ N ++R  L +  +D   EL   NILL+GPTG 
Sbjct: 65  TPREINEALDNYVIGQEKAKRYLSVAVYNHYKR--LRSGHKDDGVELSKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 GKTLLAETLARQLNVPFTMADATTLTEAGYVGEDVENIIQKLL 165



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T  ILFI  GAF                                       P DL+   
Sbjct: 238 DTSKILFICGGAFAGLDKVIRNRTHKGGIGFSADVKSLDEQRPLSESLRTVEPEDLIQYG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+++    ILT+ ++ L  QY+ L   EG  L+F +D++ A+A
Sbjct: 298 LIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQYQRLFDMEGADLEFRDDALSAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  F    L     VVID
Sbjct: 358 RKAMERKT-----GARGLRSIIENVLLDTMFDLPSLDNISKVVID 397


>gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
 gi|122417675|sp|Q1QL77|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
          Length = 424

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400


>gi|82703456|ref|YP_413022.1| ATP-dependent protease ATP-binding subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|123543991|sp|Q2Y6J1|CLPX_NITMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82411521|gb|ABB75630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosospira
           multiformis ATCC 25196]
          Length = 425

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI   LD+Y+IGQ+ AK+ +++A+ N ++R +  A   D    EL   NILL+GPTG 
Sbjct: 66  PHEIRQILDQYVIGQEQAKKILSVAVYNHYKRLRTLAKSADPDEIELAKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 103/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQV 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADL---- 312
           +T +ILFI  GAF                                 V R   P DL    
Sbjct: 241 DTTNILFICGGAFDGLEKIIRARSEKGGIGFSASVRSQDNRKDFGAVLRGVEPEDLVKYG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII-LDFTEDSIDAL 370
            +PE  GR PV   L+ L+++    ILT+  + LI QY+++   EG I L+F E ++ A+
Sbjct: 301 LIPEFVGRLPVVATLEELDEAALIQILTEPRNALIKQYQKMFHMEGGIDLEFREQALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+     V   GAR L++++E  L D  F    L+    VVID
Sbjct: 361 ARKAL-----VRKTGARGLRSILEAALLDTMFDLPSLENVAKVVID 401


>gi|291518669|emb|CBK73890.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 428

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P ++ + LD+Y+IGQ +AK+ +++A+ N ++R    P D+  EL   N+L++GPTG GKT
Sbjct: 67  PEDMKAFLDQYVIGQDEAKKVLSVAVYNHYKRIMANPDDIDVELQKSNVLMLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 LLAQTLARVLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G         +I
Sbjct: 179 GIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQETIAI 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312
           +T +ILFI  GAF                                    + P D     L
Sbjct: 239 DTKNILFICGGAFEGLEKIISQRTNVSAIGFGADVKDKNNQKIDELLQQALPQDFIKYGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+ V L  L + D   IL + +++L  QY+ L K +G+ L F +D++  +A 
Sbjct: 299 IPEFIGRVPINVSLNELTEDDMIRILKEPKNSLTKQYQALFKMDGVKLFFEDDALREIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            ++   +     GAR L+ ++E V+ D  +
Sbjct: 359 KSIERKT-----GARGLRAIVESVMMDYMY 383


>gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
 gi|254763850|sp|B8CY73|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
          Length = 416

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 5/111 (4%)

Query: 5   FNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           FN +    PREI   LD+Y++GQ+ AK+++++A+ N ++R      + D EL   NIL+V
Sbjct: 56  FNLNNIPKPREIKKILDQYVVGQERAKKSLSVAVYNHYKRVNSDMKIDDVELQKSNILMV 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 116 GPTGCGKTLLAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFIA GAF        SR                            P DLL    
Sbjct: 236 DTTNILFIAGGAFDGLDKIIKSRIDNKVMGFGADIKSKTEENVGETLKYILPEDLLRYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L + D   ILT+  + L+ QYK+  + + + L+FT +++ A+A 
Sbjct: 296 IPEFIGRLPVIVTLNELVEEDLVKILTEPRNALVKQYKKFFEMDNVELEFTPEALTAIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422
            A+  N+     GAR L+ V+E  + DI +   S+      VI  E ++ H
Sbjct: 356 KALERNT-----GARGLRAVVEEAILDIMYDLPSEPGIAKCVITPEVIKNH 401


>gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ+ AKRA+++A+ N ++R    +   D  EL   NILL+GPTG GK
Sbjct: 64  PTEIKAVLDQYVIGQEHAKRALSVAVYNHYKRINAGSQKNDDVELSKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 63/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 237 DTTNILFICGGAFDGLETIIKRRLGSKVIGFGAAGSASSETKDSAILQHV-LPEDLLKFG 295

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L +L++   + ILT+ ++ ++ Q+++L+  + ++L+F ED+++ +A
Sbjct: 296 LIPEFIGRLPVIATLDALDEEALKRILTEPKNAIVKQFQKLLDMDNVVLEFHEDALETIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
             A+   +     GAR L+ ++E ++ D+ +   S  D+Q K ++  A  +R
Sbjct: 356 KEAIRRGT-----GARGLRAIIESIMLDVMYELPSRDDVQ-KCIITKAAVLR 401


>gi|108762916|ref|YP_630960.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108466796|gb|ABF91981.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Myxococcus xanthus DK 1622]
          Length = 399

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
            +PREI   LDR++IGQ  AKRAVAIA  N  +R       R  L+ K NILL+GPTG G
Sbjct: 55  LTPREIYERLDRFVIGQDGAKRAVAIAAHNHLKRLLARRLRRTSLIKKSNILLMGPTGSG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT I+R LA +   PF  V+ T++TE GY G++VE +I DL+  A + V +++R
Sbjct: 115 KTHIARNLADILHVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 168



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 52/223 (23%)

Query: 245 GIVFLDEFDKIVARDSG--NGIG---VSREGVQRDLLPLVEGSSV-----------STKY 288
           GI+F+DE DKI  R  G  NG G   +  EGVQ+ LL L+EG  V            + +
Sbjct: 169 GIIFIDEVDKIARRSQGARNGAGSRDIGGEGVQQSLLKLLEGREVYVPLNVTQAWNKSDF 228

Query: 289 GSINTDHILFIASGAFH-------VSRPA------------------------DLLPEIQ 317
             ++T  ILFI +G F          R A                         +L E  
Sbjct: 229 VQVDTRDILFICAGTFSDLHDDGDEGRRAMGFGAEDSAKRSQKRISTRQLTDFGMLAEFL 288

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L+ L + D   +LT+   +++ +++EL+  + + +DF +  +  +   +V  
Sbjct: 289 GRLPVVVQLERLGEEDLMRVLTEPPDSIVREFRELLSMDDLEVDFADPGLREVVRYSVER 348

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
                 +GAR L++V+E V+ D+ F A + + + V++DA +VR
Sbjct: 349 G-----LGARGLRSVLEHVMADVMFEAPERRRRQVMVDAGFVR 386


>gi|89092955|ref|ZP_01165907.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
 gi|89082980|gb|EAR62200.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
          Length = 416

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +A+A+ N ++R +   + +   EL   NILL+GPTG G
Sbjct: 57  TPAELSAALDEYVIGQERAKKVLAVAVYNHYKRLRFQKNDKSGVELGKSNILLIGPTGSG 116

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 117 KTLLAQTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 158



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 171 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 230

Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------- 311
           +T +ILFI  GAF                    V +  D                     
Sbjct: 231 DTSNILFICGGAFAGLEQIIRDRSEKSSIGFSAVVKSKDEEKTVSDSLTELEAEDLVKYG 290

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L++     ILT+ +++L  QY  L   EG  +DF ++++ A+A
Sbjct: 291 LIPEFVGRLPMIATLAELDEEALVQILTEPKNSLTKQYAALFDMEGAEVDFRQEALLAVA 350

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E  L DI +    ++    VVID
Sbjct: 351 QKALERKT-----GARGLRSILEATLLDIMYQLPSMENVSKVVID 390


>gi|314936221|ref|ZP_07843568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis subsp. hominis C80]
 gi|313654840|gb|EFS18585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis subsp. hominis C80]
          Length = 420

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R QQL  +  D EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNDYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 65/242 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY +++  + + L+FTE+++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLALDNVELEFTEEALAAVSEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           +   +     GAR L++++E  L DI +   S SD+ +  VV+ A+ +   I     E +
Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMYDVPSTSDVAK--VVVTAQTINDEI-----EPE 404

Query: 432 MY 433
           MY
Sbjct: 405 MY 406


>gi|23014985|ref|ZP_00054777.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 422

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R Q      +E  L   NILL+GPTG G
Sbjct: 65  TPKDICQVLDDYVIGQGHAKKVLSVAVHNHYKRLQHGGKNNNEVELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 178



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 239 DTTNILFICGGAFSGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E   L F++D++ A+A+
Sbjct: 299 IPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLSFSDDALKAIAE 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L     VVI+ E V
Sbjct: 359 KAIARKT-----GARGLRSIMETILLDTMFDLPGLDAVDEVVINKEVV 401


>gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
 gi|238689116|sp|B1Y6H2|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
          Length = 424

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AKR +++A+ N ++R +  AD       EL   NILL+GPTG 
Sbjct: 69  PSEIKTLLDQYVIGQDAAKRTLSVAVYNHYKRLKHMADKGKGEEVELAKSNILLIGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 129 GKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 171



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          I
Sbjct: 184 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 243

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 244 DTTNILFICGGAFDGLEKVIANRSEKSGIGFGATVKSKAERSVSEVFRQIEPEDLIKFGI 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY+ L   +G+ L+     + A+A 
Sbjct: 304 IPELVGRLPVIATLGELTEDALVQILTEPKNALLKQYQRLFGMDGVELEIRPSGLAAIAQ 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 364 KALKRKT-----GARGLRSIVEQALMDTMF 388


>gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
 gi|167660964|gb|EDS05094.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
          Length = 419

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ++AK+ +++A+ N ++R     D+  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMAQKDMGVELNKSNILMLGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 169



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G          
Sbjct: 178 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 237

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             V R      P DL    
Sbjct: 238 IDTTNILFICGGAFEGIDKIVEKRIDQKSIGFNADIAKKHENDVDRLLAQVLPQDLVKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L+K     IL++ ++ ++ QY++L++ +G+ L F + +++A+A
Sbjct: 298 LIPELVGRMPVTVALEMLDKKALMQILSEPKNAIVKQYQKLLELDGVDLIFDQKALEAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + ++   +     GAR L+ +ME ++ DI + A SD   K+  I  + V+
Sbjct: 358 ETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKSCRITEDVVK 402


>gi|166031008|ref|ZP_02233837.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
 gi|166029275|gb|EDR48032.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 70  LKPEEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRIMAQRDLGVELNKSNILMLGPTGCGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 130 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI++LDE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G          
Sbjct: 182 YGIIYLDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 241

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             V +      P DL    
Sbjct: 242 IDTTNILFICGGAFEGIDKIIEKRIDQKSIGFNAEIAEKHEDDVDKLLAQVLPQDLVKFG 301

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L+      ILT+ ++ ++ QY++L++ +G+ L F + +++ +A
Sbjct: 302 LIPELVGRVPVTVSLEMLDHDALIRILTEPKNAIVKQYQKLLELDGVKLVFDDSALNEIA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
           D+++   +     GAR L+ +ME  + DI + A SD   KT  I  + V
Sbjct: 362 DISLKRKT-----GARGLRAIMENTMMDIMYRAPSDETLKTCRITGDVV 405


>gi|126727091|ref|ZP_01742928.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126703519|gb|EBA02615.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        + EL   NI+L+GPTG GK
Sbjct: 65  TPKEICEVLDDYVIGQGHAKRVLSVAVHNHYKRLNHAGKGSEIELAKSNIMLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILF+  GAF         R                            P DLL    
Sbjct: 238 DTTNILFVCGGAFAGLDKIIAQRGKGSSIGFGADVRDEATKGIGETLKDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+      IL++ ++ L+ QY+ L + E   L FT+D++ A+  
Sbjct: 298 IPEFVGRLPVIATLEDLDLDALVTILSEPKNALVKQYQRLFELEDAELKFTDDALKAIGS 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSIMEDILLDTMFDLPGLENVSEVVVNEEAV 400


>gi|60115356|gb|AAX14030.1| ATP-binding subunit heat shock protein ClpX [Azospirillum
           brasilense]
          Length = 422

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPQDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHATKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGRGTSIGFGADVRGPDERRTGDILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+F++D++  ++ 
Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMENVRLEFSDDALRTISH 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L D  F    L
Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGL 387


>gi|325066965|ref|ZP_08125638.1| ATP-dependent protease ATP-binding subunit ClpX [Actinomyces oris
           K20]
          Length = 433

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPTG
Sbjct: 64  PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 124 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G            I
Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFIA+GAF                                        RP DL  
Sbjct: 240 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTGSTASQDVFTSPVRPEDLHK 299

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ T+ +I+A
Sbjct: 300 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 359

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 360 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406


>gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
 gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
          Length = 439

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 81  LTPAEIKNGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGK 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 141 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLLQAA 184



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   V  EGVQ+ LL ++EG  S+V    G          I
Sbjct: 194 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPNGGRKHPQQEFIQI 253

Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312
           +T +ILFI  GAF     ++ R  D                                  L
Sbjct: 254 DTTNILFICGGAFDGLDKYILRRTDRSALGFGSSLKDNSEDAQRALLRKVEPHDMVKFGL 313

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + L+FT++++ A+A 
Sbjct: 314 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDSVELEFTDEALHAIAR 373

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +   +     GAR L++VME +L  + +
Sbjct: 374 KTIERKT-----GARGLRSVMEGILLPVMY 398


>gi|307544937|ref|YP_003897416.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
 gi|307216961|emb|CBV42231.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
          Length = 425

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 63/100 (63%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AK  +++A+ N ++R +  A    EL   NILL+GPTG GKT
Sbjct: 67  APREIRHTLDDYVIGQDRAKMVLSVAVYNHYKRLRYGAKDEVELGKSNILLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 166



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++              ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTAQVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T ++LFI  GAF     V R                               P DL    
Sbjct: 239 DTTNMLFIVGGAFAGLDKVIRDRAEKGGIGFNAEVKTKDETKGVGDLLLDVEPEDLVKFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L +     ILT+ +++LI QY  L   EG+ LDF ED++ A+A
Sbjct: 299 LIPEFVGRLPVIATLTELTEDALIQILTEPKNSLIKQYARLFDMEGVELDFREDALRAVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+  N+     GAR L++++E VL D  +    ++    VVIDA  +
Sbjct: 359 AKAMARNT-----GARGLRSILESVLLDTMYEIPSIEGVSKVVIDASVI 402


>gi|183220374|ref|YP_001838370.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910488|ref|YP_001962043.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|238687813|sp|B0SMF0|CLPX_LEPBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687840|sp|B0SEC2|CLPX_LEPBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167775164|gb|ABZ93465.1| ATPase subunit of endopeptidase Clp [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778796|gb|ABZ97094.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 426

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 6/113 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI   LD+Y+IGQ+ AK+A+A+A+ N ++R    ++   D+  EL   NI+L+GPTG 
Sbjct: 69  PTEIKKILDQYVIGQEQAKKALAVAVYNHYKRIFHNERKAGDV--ELEKSNIMLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           GKT +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N V+ +
Sbjct: 127 GKTLLAQTLARILKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDVKRA 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 61/214 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 182 GIIYIDEIDKISRKSDSASITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEYIPV 241

Query: 292 NTDHILFIASGAF--------------------------------------HVSRPADLL 313
            T +ILFI  GAF                                      H   P DL+
Sbjct: 242 ETKNILFICGGAFVGLTDIIKQRVGVKSIGFHSNEVVNDRGRKIEEGESLVHHVIPDDLM 301

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR P+   L  L     + I T+ +++L+ QY+++   E + L FTE +I+
Sbjct: 302 KFGLIPEFIGRLPIIATLDELTIESLKSIFTEPKNSLLKQYQKMFDIENVKLKFTESAIE 361

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+A  A+   S     GAR L+ ++E ++ ++ F
Sbjct: 362 AIAQTAIKRES-----GARGLRAIVEEIMMELMF 390


>gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 422

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    Q   D+  EL   NILL+GPTG 
Sbjct: 65  TPRDICGVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRDNDARGIGEIFTDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFELEDTQLTFTDDALTAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    L   T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFELPGLDTVTEVVVNEEAV 400


>gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
 gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
          Length = 421

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T ++LFI  GAF                     V  P D                   L
Sbjct: 238 DTTNMLFICGGAFAGLDKIISDRGTQTSIGFQAQVHAPEDRRIGELFSELEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A+
Sbjct: 298 IPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQYQRLFEMEQVELSFHEEALRAIAN 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L++++E +L D  +    L+  K VVI  E V+
Sbjct: 358 RAIERKT-----GARGLRSILESILLDTMYELPGLKGVKEVVISPEVVK 401


>gi|291550776|emb|CBL27038.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus torques L2-14]
          Length = 423

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDEYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 57/212 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                    + P DL    
Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRIDRKSIGFNAEIASKHEYDMDVLLQEALPQDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F +D++  +A
Sbjct: 296 LIPELVGRLPVTVSLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDALLEIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +  +   +     GAR L+ +ME ++ D  F+
Sbjct: 356 ETTLKRKT-----GARGLRAIMENIMMDTMFT 382


>gi|227486248|ref|ZP_03916564.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235659|gb|EEI85674.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 5   FNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           F+F    P++I + LD Y+IGQ+DAK+ +++A+ N ++R     D  + EL   NIL++G
Sbjct: 56  FDFKLSKPKDIKAYLDSYVIGQEDAKKTLSVAVYNHYKRITSNEDDSEVELQKSNILMLG 115

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 116 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 54/227 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIRV 234

Query: 292 NTDHILFIASGAFH--------------VSRPAD---------------------LLPEI 316
           +T +ILFI  GAF               +   AD                     L+PE 
Sbjct: 235 DTTNILFILGGAFEGIGNIINQRQMDKTIGFGADITKREKTDLSMVNTDDLLKFGLIPEF 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L +L++     IL + +++LI QY++L   + + L F +D+I  +A  A +
Sbjct: 295 IGRVPIIVSLDALDEEALVRILKEPKNSLIKQYQKLFDLDDVKLSFNDDAISEIAKKAYD 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
             +     GAR L+T++E +L D+ +      E K V++  E +  H
Sbjct: 355 QKT-----GARGLRTIIENLLLDVMYEIPSRDEIKEVIVTKESIDDH 396


>gi|330808573|ref|YP_004353035.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376681|gb|AEA68031.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400


>gi|269955921|ref|YP_003325710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304602|gb|ACZ30152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 426

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 6/114 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNI 56
           LT    PREI   L++YIIGQ  AKRA+A+A+ N ++R    +Q P    D  E+   NI
Sbjct: 58  LTELPKPREIFEFLEQYIIGQDAAKRALAVAVYNHYKRIQASEQRPGGDADAIEISKSNI 117

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 118 LLIGPTGTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 56/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKVARKADNPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH-------------------------------VSRPADL-----LPE 315
           +T ++LFI +GAF                                  RP DL     +PE
Sbjct: 241 DTTNVLFIVAGAFAGLEEIVAARARKRGIGFGAPMETVVDDDLFAEVRPEDLQKYGLIPE 300

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   +  L++     ILT+  + L+ QY+ + + +G+ L+F++D+++A+AD A+
Sbjct: 301 FIGRLPVIASVSPLDRDALVRILTEPRNALVKQYQRMFQIDGVELEFSDDAVEAIADQAL 360

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
            L  T    GAR L+ +ME VL+ + F   + D  EK V+
Sbjct: 361 -LRGT----GARGLRAIMEEVLQQVMFDVPSRDDVEKVVI 395


>gi|296270439|ref|YP_003653071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
 gi|296093226|gb|ADG89178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           PREI   LD Y++GQ  AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG G
Sbjct: 64  PREIYEFLDSYVVGQDKAKKALSVAVYNHYKRIQSGNRARDDGLELAKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 58/243 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAFH-------------------VSR---------------PADLL---- 313
           +T ++LFI  GAF                    V R               P DLL    
Sbjct: 238 DTTNVLFICGGAFAGLEKIIEQRIGKKGIGFNAVLRSREEMDSSDIFAEVMPEDLLKYGM 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+++    ILT  ++ L+ QY+ L + + + L+FT+D+++A+AD
Sbjct: 298 IPEFVGRLPVITSVHNLDRNALIQILTKPKNALVKQYRRLFELDNVELEFTDDALEAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
            A+ L  T    GAR L+ +ME VL  + +     Q+   VVI  E V  ++       D
Sbjct: 358 QAI-LRGT----GARGLRAIMEEVLLSVMYEVPSRQDIARVVITREVVLENVNPTLVPRD 412

Query: 432 MYH 434
            Y 
Sbjct: 413 QYQ 415


>gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
 gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R     +  D EL   NIL++GPTG GK
Sbjct: 62  TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 56/216 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 234

Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316
           +T +ILFI  GAF                     V++ A                L+PE 
Sbjct: 235 DTTNILFILGGAFDGIEDIINRRLSEKTIGFGASVTKNASASLKEVNTEDLLKYGLIPEF 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L +L       IL + +++ + QY++L + +G+ L F +++++ +A+ A N
Sbjct: 295 IGRVPIVVSLDALEVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDEALEKIAEKAYN 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
             +     GAR L+T+ME +L D+ F   S  DL+E
Sbjct: 355 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE 385


>gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
          Length = 416

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ DAK+ +++A+ N ++R     ++  ++   NIL+VGPTG GK
Sbjct: 45  LKPKEIKAFLDEYVIGQDDAKKVLSVAVYNHYKRVTACQNMDVDVQKSNILMVGPTGSGK 104

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 105 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 148



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 157 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 216

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                      P DL    
Sbjct: 217 IDTTNILFICGGAFDGLEKIVEQRLSAGSIGFNAEVANKNDLNIDELLKKVEPKDLTKFG 276

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L+ L K     IL++ ++ L+ QY++L + + + L+FT+++++ +A
Sbjct: 277 LIPEFIGRVPVMVSLEQLTKDAMVRILSEPKNALMRQYQKLFELDNVKLEFTQEALEEIA 336

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV+       IGAR L++++E V+ D+ +
Sbjct: 337 QLAVDRK-----IGARGLRSILESVMMDLMY 362


>gi|332992308|gb|AEF02363.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas sp.
           SN2]
          Length = 425

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +   D+ D  EL   NILL+GPTG GK
Sbjct: 68  PSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 65/234 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-------------------------------HVSR------PADL-- 312
           +T  ILFI  GAF                                +S       P DL  
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKGTGIGFGAAVKSKSENTAQISELFKQVEPQDLVK 299

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D++ A
Sbjct: 300 YGLIPEFIGRLPVVTSLEELNEEALIQILKEPKNAITKQYSALFDMEDVELEFRDDALHA 359

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           +A  A+   +     GAR L++++E VL D  +   SA D+ +  VVID   +R
Sbjct: 360 IAKKAMERKT-----GARGLRSIVEAVLLDTMYELPSAVDVSK--VVIDETVIR 406


>gi|302869358|ref|YP_003837995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315504167|ref|YP_004083054.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Micromonospora sp. L5]
 gi|302572217|gb|ADL48419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410786|gb|ADU08903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora sp. L5]
          Length = 430

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           P EI   LD Y++GQ+ AK+A+A+A+ N ++R Q      P    D  EL   NILL+GP
Sbjct: 64  PMEICQFLDNYVVGQEQAKKALAVAVYNHYKRIQAEAAGAPGSGTDGVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF-----------------------HVSR-----------PADLL---- 313
           +T ++LFI  GAF                        VS            P D+L    
Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGSGGTGFGARLRSVSERSTDDIFSQVMPEDMLKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F + +++A+AD
Sbjct: 302 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386


>gi|225568848|ref|ZP_03777873.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
 gi|225162347|gb|EEG74966.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
          Length = 426

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G          
Sbjct: 185 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 244

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             V R      P DL    
Sbjct: 245 IDTTNILFICGGAFEGIEKIVENRIDKKAIGFNADITEKHENDVDRLLNQVLPQDLVKYG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L+K     ILT+  S L  QY++L++ +G+ L F ED+++ +A
Sbjct: 305 IIPELVGRVPVTVALQMLDKEALMRILTEPRSALAKQYQKLLELDGVDLIFDEDALEEIA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + ++   +     GAR L+ +ME V+ DI + A SD   KT  I  E V+
Sbjct: 365 ETSLKRKT-----GARGLRAIMENVMMDIMYRAPSDETLKTCRITKEVVK 409



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 73  LKPEEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRIMAQKDLGVELNKSNILMLGPTGCGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 176


>gi|291456563|ref|ZP_06595953.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
 gi|291381840|gb|EFE89358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
          Length = 453

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 107/231 (46%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYGS-------- 290
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 205 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 263

Query: 291 ---INTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 264 TVQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADLKDEELLKQVNADDLAE 323

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   L+ L   D   ILT   + LI QY++L   +G+ L+FT+ ++ A
Sbjct: 324 FGLLPEFIGRLPVTSVLEELTVDDLTEILTQPANALIKQYRKLFAVDGVDLEFTDQAVQA 383

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD A+        IGAR L++++ER L+D  F    L++ K VV+D   V
Sbjct: 384 IADTAIKQG-----IGARGLRSIIERTLQDTMFQLPSLEDVKQVVVDKASV 429



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 31/133 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                            
Sbjct: 65  PTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNVALQSAGRAR 124

Query: 41  --QQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
             Q+    L D E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  TE GYVG 
Sbjct: 125 KSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGD 184

Query: 98  NVEQIIRDLVDVA 110
           +VE +++ L+  A
Sbjct: 185 DVETVLQRLLQAA 197


>gi|254451899|ref|ZP_05065336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 238]
 gi|198266305|gb|EDY90575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 238]
          Length = 378

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AKR +++A+ N ++R    AD  D EL   NI+L+GPTG GK
Sbjct: 21  TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLNH-ADKSDIELAKSNIMLIGPTGCGK 79

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 80  TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 132



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 133 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 192

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILF+  GAF         R                            P DLL    
Sbjct: 193 DTTNILFVCGGAFAGLDKIIAQRGKGAGMGFGAEVRGPDERGVGEIFSDLEPEDLLKFGL 252

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL+  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 253 IPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDALVAIAK 312

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 313 RAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 355


>gi|56478266|ref|YP_159855.1| ATP-dependent protease ATP-binding subunit ClpX [Aromatoleum
           aromaticum EbN1]
 gi|62286505|sp|Q5P160|CLPX_AZOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56314309|emb|CAI08954.1| ATP-dependent Clp protease ATP-binding,subunit clpX [Aromatoleum
           aromaticum EbN1]
          Length = 422

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P+EI   L++Y+IGQ  AKR +++A+ N ++R +  +  ++E  L   NILL+GPTG G
Sbjct: 66  TPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 59/225 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G         
Sbjct: 178 QHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFI 237

Query: 290 SINTDHILFIASGAF----------------------------HVSR------PADLL-- 313
            I+T +ILFI  GAF                            +VS       P DL+  
Sbjct: 238 QIDTTNILFICGGAFDGLEKVIRNRTEKIGIGFGAEIKSREGKNVSESFRQVEPEDLIKF 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     IL + ++ L+ QY++L   EG+ L+    ++ A+
Sbjct: 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L DI +    L+  EK VV
Sbjct: 358 ARKAIRRKT-----GARGLRSILESALLDIMYDLPTLEGVEKVVV 397


>gi|320534810|ref|ZP_08035229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320132989|gb|EFW25518.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 440

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPTG
Sbjct: 71  PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 130

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 131 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 186



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G            I
Sbjct: 187 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 246

Query: 292 NTDHILFIASGAFH-------------------------------------VSRPADL-- 312
           +T +ILFIA+GAF                                        RP DL  
Sbjct: 247 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTSGTGSQDVFTAPVRPEDLHK 306

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ T+ +I+A
Sbjct: 307 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 366

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 367 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADSVR 413


>gi|296116538|ref|ZP_06835148.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976750|gb|EFG83518.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 419

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 64  TPREICNILDDYVIGQMHAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNIMLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 176



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T ++LFI  GAF                     V  P D                   L
Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPDDRRTGAILRDIEPEDLLKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + E + L F+++++  +A 
Sbjct: 297 IPEFIGRLPVLATLEDLDEAALIEILTKPKNALVKQYARLFQMEDVKLTFSDEALSTIAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+ ++E +L    F    L+
Sbjct: 357 RAIARRT-----GARGLRAILESILLTTMFDLPGLK 387


>gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 440

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI   LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 82  LTPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGSDVELQKSNVLLLGPSGVGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 185



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   V  EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 195 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 254

Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312
           +T +ILFI  GAF     ++ R  D                                  L
Sbjct: 255 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSSLKDNSSEAEKALLRKVEPHDLVKFGL 314

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + L+FT++++ A+A 
Sbjct: 315 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELNFTDEALHAIAR 374

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +   +     GAR L++VME +L  I +
Sbjct: 375 KTIERKT-----GARGLRSVMESILLPIMY 399


>gi|326771853|ref|ZP_08231138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
 gi|326637986|gb|EGE38887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
          Length = 433

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPTG
Sbjct: 64  PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 124 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G            I
Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFIA+GAF                                        RP DL  
Sbjct: 240 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTGSTGSQDVFTSPVRPEDLHK 299

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ T+ +I+A
Sbjct: 300 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 359

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 360 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406


>gi|254705082|ref|ZP_05166910.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           3 str. 686]
          Length = 77

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 60/77 (77%)

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+
Sbjct: 1   EFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVK 60

Query: 421 LHIGDFPSETDMYHFIL 437
             IG     TD+  FIL
Sbjct: 61  EKIGGLAKNTDLSRFIL 77


>gi|227500203|ref|ZP_03930272.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
 gi|227217725|gb|EEI83029.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R      D   EL   NIL++GPTG GK
Sbjct: 62  TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSEIELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 234

Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316
           +T +ILFI  GAF                     VS+ A                L+PE 
Sbjct: 235 DTTNILFILGGAFDGIEDIINRRLSEKTIGFGASVSKNAKASLKEVNTEDLLKYGLIPEF 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L +L       IL + +++ + QY++L + +G+ L F +D++  +A  A +
Sbjct: 295 IGRVPIIVSLDALEIDSLVQILKEPKNSFVKQYQKLFELDGVKLTFEDDALYQIAKKAFD 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
             +     GAR L+T+ME +L D+ F   S  DL+E  V++  E V
Sbjct: 355 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE--VIVTKESV 393


>gi|254421934|ref|ZP_05035652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7335]
 gi|196189423|gb|EDX84387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7335]
          Length = 443

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           PREI S LD ++IGQ +AK+ +++A+ N ++R  + A+  +     EL   NILL+GPTG
Sbjct: 83  PREIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSVQAEGEEAEDDIELQKSNILLIGPTG 142

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 143 CGKTLLAQTLAAILEVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 198



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 199 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 258

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILF+  GAF                                       P D+    
Sbjct: 259 DTRNILFVCGGAFVGLDKIVEQRIGKKSMGFVQPGREINSDAKSSLTLQDLEPDDIVKFG 318

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P    ++ L++     ILT+ ++ L+ Q+K+LM+ + + L+F  D+I A+A
Sbjct: 319 IIPEFIGRIPAVSIVEPLDEKTLVAILTEPKNALVKQFKKLMRMDDVELEFEPDAIRAIA 378

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A N  +     GAR L++++E ++ D+ +      + KT  I  E V
Sbjct: 379 KEAFNRKT-----GARALRSIIEEIMLDVMYELPSRDDVKTCTITREMV 422


>gi|57505536|ref|ZP_00371463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           upsaliensis RM3195]
 gi|57016083|gb|EAL52870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           upsaliensis RM3195]
          Length = 409

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           N +P+ + + LDRY+IGQ  AK+  ++ + N ++R    ADL D   EL   NILLVGPT
Sbjct: 62  NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRL-FRADLEDDDTELFKSNILLVGPT 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A N +  +++
Sbjct: 121 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDIERAQK 177



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 53/223 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 178 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 237

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 238 DTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDNAKEENKALLEKIEPDDLVHFGLIPEL 297

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 298 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 357

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +     GAR L++++E ++ D+ F   + ++  +VI  E V
Sbjct: 358 RKT-----GARGLRSIIEEMMVDLMFELHEYKDYDIVITKEVV 395


>gi|313158087|gb|EFR57492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alistipes sp.
           HGB5]
          Length = 425

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           +K+     P +I   LD+Y+IGQ DAKR +A+A+ N ++R    P +   E+   NI+LV
Sbjct: 70  LKMEELLKPAQIKDFLDQYVIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 129

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ R
Sbjct: 130 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 189



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 55/229 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K+  +
Sbjct: 190 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 249

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                    P DL     +P
Sbjct: 250 DTRNILFICGGAFDGVEKKIAQRLNTRAMGYGRLRADRIDRNNLMQYITPQDLKSFGLIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV  +++ L++   R ILT+ ++ ++ QYK L + + + L F +  +D + D A
Sbjct: 310 ELVGRLPVLTYMQPLSREALRSILTEPKNAIVKQYKRLFELDNVKLTFDDAVLDYIVDKA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           V        +GAR L+++ E ++ D  F       +  V+   Y +  I
Sbjct: 370 VEFK-----LGARGLRSICEAIMMDTMFDLPSTDTRKFVVTLPYAKKKI 413


>gi|328950942|ref|YP_004368277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451266|gb|AEB12167.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus
           hydrothermalis DSM 14884]
          Length = 407

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+ I + LD+Y+IGQ++AK+A+++A+ N ++R    Q    L DE+   NILL+GPTG G
Sbjct: 63  PQAIKAHLDQYVIGQEEAKKALSVAVYNHYKRLMYAQQKDGLVDEIQKSNILLIGPTGTG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++  LARL   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 123 KTLLAETLARLLDVPFAIADATTLTEAGYVGEDVENVVLRLLQAA 167



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 50/220 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 177 GIIYIDEIDKIARKSEGPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIPV 236

Query: 292 NTDHILFIASGAFH------VSR---------------------PADL-----LPEIQGR 319
           NT +ILFI  GAF        SR                     P DL     +PE  GR
Sbjct: 237 NTRNILFILGGAFEGLEAIVKSRVDESPIGFAARKAKDEKPEVIPEDLVKFGLIPEFVGR 296

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV V L  L++     ILT+ ++ LI QY+EL + EG+ L+FTE+++  +A  A+   +
Sbjct: 297 VPVIVQLDPLDEEALVRILTEPKNALIKQYQELFRMEGVRLEFTEEALREIARRAMKRGT 356

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
                GAR L+ V+E+ + ++ + A     K +V D E++
Sbjct: 357 -----GARGLRAVIEKAMVELMYEAPGSGVKVIVFDREHL 391


>gi|149916366|ref|ZP_01904886.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
 gi|149809820|gb|EDM69672.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
          Length = 420

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++I + LD Y+IGQ  AKR +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 65  TPQDICAVLDDYVIGQSMAKRVLSVAVHNHYKRLNHSGKNDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      +S+                             P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDRIISQRGKGSAMGFGADVRDVDARNTGEVFKDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ LI QY+ L + E   L FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALIKQYQRLFELENAQLTFTDDALTAIAR 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L +  F
Sbjct: 357 RAIARKT-----GARGLRSILEDILLNTMF 381


>gi|312143236|ref|YP_003994682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
 gi|311903887|gb|ADQ14328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
          Length = 421

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 1/111 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +KL+    P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NI++V
Sbjct: 57  LKLSEIPKPKEIKEILDQYVIGQERAKKSLSVAVYNHYKRVNTNMVVDDVELQKSNIMMV 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 117 GPTGCGKTLMAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFIA GAF                                    H+ +P DLL  
Sbjct: 237 DTTDILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTKNESKNIGEILKHI-QPQDLLHY 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV+V L  L   D   I+ +  + L+ QY++    + I L+FT+D+++A+
Sbjct: 296 GLIPEFIGRMPVQVTLDELEVEDMVRIMQEPRNALVKQYQKFFLMDDIELEFTDDALEAI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A+ A++ N+     GAR L++V+E  + DI +      E K  +I  E + 
Sbjct: 356 ANQALSRNT-----GARGLRSVVENTVLDIMYDLPSRPEIKKCIITKEVIE 401


>gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii L2-6]
          Length = 443

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGKT
Sbjct: 86  TPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGKT 145

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 146 LLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 188



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   V  EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 198 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 257

Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312
           +T +ILFI  GAF     ++ R  D                                  L
Sbjct: 258 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSALKDNSSEAEKALLRKVEPHDLVKFGL 317

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + LD T++++ A+A 
Sbjct: 318 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELDITDEALHAIAR 377

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +   +     GAR L++VME +L  I +
Sbjct: 378 KTIERKT-----GARGLRSVMENILMPIMY 402


>gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
 gi|166214778|sp|A4G5X0|CLPX_HERAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|133738860|emb|CAL61907.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
          Length = 422

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+E+   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQELCELLDQYVIGQNSAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T +I+FI  GAF                                    + P DL+    
Sbjct: 240 DTTNIMFICGGAFDGLAKIISERSEKSGIGFSATVKSREERSASQVMLDTEPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L+ L++     IL + ++ LI QY +L++ EG  L+    ++ A+A 
Sbjct: 300 IPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +   + Q    VVID
Sbjct: 360 KAIARKT-----GARGLRSILEHALLDVMYELPNEQNVSKVVID 398


>gi|254282549|ref|ZP_04957517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR51-B]
 gi|219678752|gb|EED35101.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR51-B]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD+Y+IGQQ AKR +++A+ N ++R +  P    D  EL   NILLVGPTG G
Sbjct: 68  PHEIKQILDQYVIGQQRAKRVLSVAVYNHYKRLRYAPKSGGDDVELSKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 58/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFHVS-----------------------------------RPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 242 DTSNILFICGGAFAGLDKVIKNRSEKGGIGFAAEVKSKDETRKFGETLSDLEPEDLVQYG 301

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+++    ILT+  + L  QY ++   EG+ +DF ED + A+A
Sbjct: 302 LIPEFVGRLPVIATLEELDEAALIQILTEPRNALTKQYAKMFDMEGVEIDFREDGLRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           + A+   +     GAR L++++E VL D  ++
Sbjct: 362 EKAMERKT-----GARGLRSILEGVLLDSMYN 388


>gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
 gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
          Length = 421

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGTQTSIGFQAKVHAPEDRRIGELFAELEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 298 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALVKQYQRLFEMEQVELSFHEEALKAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L++++E +L D  +    L+  K VVI  E V+
Sbjct: 358 RAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVVK 401


>gi|332085738|gb|EGI90902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 155-74]
          Length = 424

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELSKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|313890517|ref|ZP_07824145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121034|gb|EFR44145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 417

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R    A+ RD    EL   NIL++GPTG 
Sbjct: 72  PKELLETLNQYVVGQDRAKRALAVAVYNHYKRVSF-AESRDDEEVELQKSNILMIGPTGS 130

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 131 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 185



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 186 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 245

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 246 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISEDIQTFGLIP 305

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN  D   ILT+ ++ L+ QY+ L+  +G+ L F ++++DA+A+ A
Sbjct: 306 EFIGRLPVVAALEQLNTKDLVKILTEPKNALVKQYQTLLSYDGVELTFDQEALDAIAEKA 365

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 366 IARKT-----GARGLRSIIEETMLDLMF 388


>gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas
           testosteroni CNB-2]
 gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas
           testosteroni CNB-2]
          Length = 420

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   +  A   D EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFLQI 240

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI SGAF                             +S       P DL+    
Sbjct: 241 DTTNILFICSGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEMFLEIEPEDLIKFGI 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 301 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L    F
Sbjct: 361 KALARKT-----GARGLRSIVEQALISTMF 385


>gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
 gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
          Length = 425

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-----PKNILLVGP 61
             P+E+  +LD ++IGQ++AK+++A+A+ N ++R Q+ +D +DEL        NIL +GP
Sbjct: 65  LKPKELFLKLDEHVIGQEEAKKSLAVAVYNHYKRLQV-SDHKDELSDVKISKSNILFIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT +++ LA L   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 124 TGSGKTLLAQTLADLLQVPFVMADATTLTEAGYVGEDVENIMQKLL 169



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 63/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  I
Sbjct: 182 GIVYIDEVDKISRKTDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQI 241

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T +ILFI  GAF                     V   +D                    
Sbjct: 242 DTTNILFICGGAFDGLEKIIKERTEKNSIGFGAEVQGKSDVKAFGDVVKNVQSEDLIRFG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+SL+K     ILT+ ++ L  Q+K+L + EG+ LDF  ++++A+A
Sbjct: 302 LIPEFIGRLPVITTLESLDKEALIRILTEPKNALTKQFKKLFRIEGVELDFRPEALEAIA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           + A+   S     GAR L++++E  L++  F   +  DL++  VVID   +
Sbjct: 362 EKALERKS-----GARGLRSILEIALKETMFELPTTKDLEK--VVIDGNVI 405


>gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
 gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
          Length = 420

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   +  A   D EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFLQI 240

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI SGAF                             +S       P DL+    
Sbjct: 241 DTTNILFICSGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEMFLEIEPEDLIKFGI 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 301 IPELVGRMPVVTALAELSEEALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L    F
Sbjct: 361 KALARKT-----GARGLRSIVEQALISTMF 385


>gi|89895950|ref|YP_519437.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670383|ref|YP_002460818.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfitobacterium
           hafniense DCB-2]
 gi|122997224|sp|Q24SJ9|CLPX_DESHY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763844|sp|B8FVI0|CLPX_DESHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89335398|dbj|BAE84993.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540643|gb|ACL22382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ +AK+A+A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 64  PKEIRAILDQYVIGQDEAKKALAVAVYNHYKRINLGMKIDDVELQKSNIVMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++  LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLASTLAKVLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADLL---- 313
           +T +ILFI  GAF                     + +              PADLL    
Sbjct: 236 DTTNILFIVGGAFDGIDKIIQNRIGKKVMGFGAEIKKKSEQNIGETLRELLPADLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT+ ++ L+ QY++L++ +G+ L+F E+++ A+A+
Sbjct: 296 IPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E +++++ +
Sbjct: 356 EAIRRNT-----GARGLRAIVEEIMQNVMY 380


>gi|73662399|ref|YP_301180.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642789|sp|Q49YA6|CLPX_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72494914|dbj|BAE18235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 420

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65
           +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R QQL P +   EL   N+ L+GPTG G
Sbjct: 63  TPKEIMDKLNDYVIGQEKAKKSLAVAVYNHYKRVQQLGPNEDEVELQKSNVALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 58/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILF+  GAF                                   RP DL     +P
Sbjct: 237 DTTNILFVLGGAFDGIDEVIKRRLGEKVIGFSSSEASKYDEDAILEQIRPEDLQSYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + L+FT++++ A+++ A
Sbjct: 297 EFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDDVTLEFTDEALSAISNKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E  L DI +   +SD   K VVI AE +
Sbjct: 357 IKRKT-----GARGLRSIIEEALIDIMYDVPSSDGVVK-VVITAETI 397


>gi|28870880|ref|NP_793499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968835|ref|ZP_03396976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato T1]
 gi|301384119|ref|ZP_07232537.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059518|ref|ZP_07251059.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato K40]
 gi|302135031|ref|ZP_07261021.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|38257469|sp|Q87YR7|CLPX_PSESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28854129|gb|AAO57194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926438|gb|EEB59992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato T1]
 gi|331019230|gb|EGH99286.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|271968523|ref|YP_003342719.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270511698|gb|ACZ89976.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 426

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ  AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG G
Sbjct: 64  PREIYEFLDAYVIGQDQAKKALSVAVYNHYKRVQSGERGRDDGIELSKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI  GAF          V R                         P DLL    
Sbjct: 238 DTTNVLFICGGAFAGLEKIIESRVGRKGIGFNAIIHSKEDVDSSDIFGDVMPEDLLKFGM 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     ILT+  + L+ QY+ L + + + L+FT+D+++A+AD
Sbjct: 298 IPEFVGRLPVITSVHNLDRDALIQILTEPRNALVKQYRRLFELDNVELEFTDDALEAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ ++E VL  + +     Q+   VVI  E V  H+
Sbjct: 358 QAI-LRGT----GARGLRAILEEVLLSVMYEVPSRQDVARVVITRESVLEHV 404


>gi|227497468|ref|ZP_03927697.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
 gi|226833042|gb|EEH65425.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
          Length = 430

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 13/120 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           P+EI   L+ Y+IGQ+ AKRA+++A+ N ++R Q+    R+         EL   NILL+
Sbjct: 64  PQEIFDFLNEYVIGQEAAKRAMSVAVYNHYKRVQV----RERAVAEGDGLELGKSNILLL 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 120 GPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G            I
Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239

Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADL---- 312
           +T +ILFIA+GAF                                      RP DL    
Sbjct: 240 DTTNILFIAAGAFAGIEDIVRQRQRKESGATTLGFGGTLSEETQDVFTTKVRPEDLHKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L  T+++I+A+A
Sbjct: 300 LIPEFIGRLPVIATVQDLGVKELVRVMTEPKNALVSQYEYLFSLDGVELVMTDEAIEAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++A+   +     GAR L +++E VL D  F    + E   VV+DA+ VR
Sbjct: 360 EMALARKT-----GARGLTSIVEEVLGDAMFEVPSMPEVGRVVVDADAVR 404


>gi|66044993|ref|YP_234834.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae B728a]
 gi|237803595|ref|ZP_04591180.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|257483814|ref|ZP_05637855.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627505|ref|ZP_06460459.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649944|ref|ZP_06481287.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289679416|ref|ZP_06500306.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486264|ref|ZP_07004327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|81308383|sp|Q4ZVM6|CLPX_PSEU2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|63255700|gb|AAY36796.1| ClpX, ATPase regulatory subunit [Pseudomonas syringae pv. syringae
           B728a]
 gi|298159271|gb|EFI00329.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325362|gb|EFW81429.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327653|gb|EFW83661.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868374|gb|EGH03083.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330878773|gb|EGH12922.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330882124|gb|EGH16273.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330889996|gb|EGH22657.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330939707|gb|EGH43002.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330959388|gb|EGH59648.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330963319|gb|EGH63579.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330975102|gb|EGH75168.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|330985640|gb|EGH83743.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331012680|gb|EGH92736.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331025577|gb|EGI05633.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|86159007|ref|YP_465792.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775518|gb|ABC82355.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 368

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
            +PREI + L +Y+IGQ+ AKRA+A+A  +  +R  L    R+  L   N+LL+GPTG G
Sbjct: 14  LTPREIHARLSQYVIGQEPAKRALAVAAYSHVKRVALRRASREVALQKSNVLLIGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + E++R
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEEAQR 127



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 94/224 (41%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289
           GIVF+DE DKI  R   +  G G   +  EGVQ+ LL L+EG  V    G          
Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187

Query: 290 --SINTDHILFIASGAFH--VSRPAD-----------------------------LLPEI 316
              ++T  ILF+ +G F    S   D                             +L E 
Sbjct: 188 TVPVDTTDILFVCAGTFSDLFSYGGDGRSLGFGAARPGAAAPRRRIRPRDLVEYGMLAEF 247

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ ++  L   A  
Sbjct: 248 LGRLPVVVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALRELVAFARE 307

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L+ V+E VL ++ F A +     V++DA +VR
Sbjct: 308 RGA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAPWVR 346


>gi|71734283|ref|YP_273936.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|123637276|sp|Q48KY9|CLPX_PSE14 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71554836|gb|AAZ34047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 67/236 (28%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------- 286
           D  QM    GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S        
Sbjct: 176 DKAQM----GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRK 231

Query: 287 ----KYGSINTDHILFIASGAF-----------------------------------HVS 307
               ++  ++T +ILFI  GAF                                      
Sbjct: 232 HPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREV 291

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P DL     +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F
Sbjct: 292 EPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             D++ ++A  A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 352 RTDALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|330952798|gb|EGH53058.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae Cit 7]
          Length = 427

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|258592922|emb|CBE69231.1| ATP-dependent Clp protease ATP-binding subunit clpX [NC10 bacterium
           'Dutch sediment']
          Length = 415

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD+Y+IGQ  AK+++A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 64  PSEIKSILDQYVIGQDRAKKSLAVAVHNHYKRVNARMTFDDVELTKSNILLIGPTGCGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE II  L+ VA
Sbjct: 124 LLAQTLAKILDVPFTIADATTLTEAGYVGEDVENIILRLLQVA 166



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEYLQV 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV +P DLL   
Sbjct: 236 DTTNILFICGGAFVGLEKAIEHRTGQKSMGFGAEIQARRGRRISELLAHV-QPEDLLRYG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   +  L++     IL + ++ L+ QY+     E + L FT+D+I A+A
Sbjct: 295 LIPELVGRLPVMAVVHELDEKALVRILVEPKNALLRQYQRFFDFEHVKLTFTDDAISAVA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ DI +
Sbjct: 355 QEAAKRQT-----GARGLRAILEEIMLDIMY 380


>gi|83858430|ref|ZP_00951952.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853253|gb|EAP91105.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 424

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   L  Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPQEIFQVLQDYVIGQAKAKRVLSVAVHNHYKRLNHAGQNGDVELSKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312
           +T +ILFI  GAF               V   AD                         L
Sbjct: 238 DTTNILFIVGGAFAGLEGIISQRGKGSAVGFGADVRDPDARRQGEVLAEVEPDDLTKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+ +    ILT+ ++ L+ QY+ L + EG+ L FTED++ A+A+
Sbjct: 298 IPEFVGRLPVIATLEDLDVAALVQILTEPKNALVKQYQRLFEMEGVGLSFTEDALTAIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+N  +     GAR L+++ME +L D  F    L
Sbjct: 358 KAINRKT-----GARGLRSIMEGILLDTMFDLPSL 387


>gi|330469648|ref|YP_004407391.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
 gi|328812619|gb|AEB46791.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
          Length = 431

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           P EI   LD Y++GQ+ AK+A+A+A+ N ++R Q      P    D  EL   NILL+GP
Sbjct: 64  PMEICQFLDTYVVGQEQAKKALAVAVYNHYKRIQAEAANAPGAGNDGVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313
           +T ++LFI  GAF                        VS            P D+L    
Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDIFGQVMPEDMLKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   ++SL++S    ILT+  + L+ QY+ L + +G+ L+F   +++A+AD
Sbjct: 302 IPEFIGRLPVITSVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFERPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386


>gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
 gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
          Length = 400

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 41  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 101 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 154 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 213

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 214 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 272

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F ++++ A+A
Sbjct: 273 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 332

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E +L +  F    L+  + VVI  E V
Sbjct: 333 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 376


>gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 418

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ+ AK+ +++A+ N ++R        + E+   NI+LVGPTG GK
Sbjct: 63  TPREICKVLDDYVIGQEHAKKVLSVAVHNHYKRLAHGGKTGEVEIAKSNIMLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 175



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 235

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 236 DTSNILFICGGAFAGLEKIIAGRGKGSGIGYGAEVRGPDERRTGQILREVEPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L FT+D++ ++A+
Sbjct: 296 IPEFIGRLPVVATLDDLDEKALVEILTKPKNALVKQYQRLFEMEATKLTFTDDALKSVAN 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+++ME +L    F    L
Sbjct: 356 RAIQRKT-----GARGLRSIMEGILLGTMFDLPGL 385


>gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
 gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF---------HVSR---------------------------PADL--- 312
           +T  ILFI  GAF          V++                           P DL   
Sbjct: 241 DTSKILFICGGAFSGLDKVIEQRVAKGTGIGFGAEVRSKDNSKSLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEKALIQILCEPKNALTKQYAALFELEKAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    + + + VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILENVLLETMYELPSMADVEKVVID 401


>gi|189462224|ref|ZP_03011009.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
 gi|189431077|gb|EDV00062.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
          Length = 414

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD+Y+IGQ DAKR +++A+ N ++R   P+   D E+   NI++VG TG GKT
Sbjct: 67  PKDIKDFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPSSKDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ R
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 178



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 239 NTKNILFICGGAFDGIERKIAQRLNTNVVGYGAAKEKVKIDRANLMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L+F  +  D + D 
Sbjct: 299 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFDYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     + +T VI  +Y +
Sbjct: 359 AVEYK-----LGARGLRSIVETIVMDAMFEVPSHKVETFVITLDYAK 400


>gi|325479719|gb|EGC82809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 402

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R     +  D EL   NIL++GPTG GK
Sbjct: 60  TPKEIKDFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 120 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 163



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 56/216 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 173 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 232

Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316
           +T +ILFI  GAF                    +V++                  L+PE 
Sbjct: 233 DTTNILFILGGAFDGIEDIIGRRLSEKTIGFGANVNKQEKASLKEVSTEDLLKFGLIPEF 292

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L +L+      IL + +++ + QY++L + +G+ L F +D++  +A  + +
Sbjct: 293 IGRVPIIVSLDALDVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDDALYEIAKKSYD 352

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
             +     GAR L+T+ME +L D+ F   S  DL+E
Sbjct: 353 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE 383


>gi|312865011|ref|ZP_07725239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
 gi|311099122|gb|EFQ57338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
          Length = 400

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  LD Y+IGQ  AKRA+A+A+ N ++R       +DE   L   NIL++GPTG G
Sbjct: 55  PKELLQILDDYVIGQDRAKRALAVAVYNHYKRISFVESAQDEDVDLQKSNILMIGPTGSG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 115 KTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFNIERAER 168



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 169 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 228

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 229 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNKSIDDDASYMQQIISEDIQKFGLIP 288

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+ ++ L+ QYK L+  +G+ L+F +++++A+A  A
Sbjct: 289 EFIGRLPVLAALEQLTVEDLVRILTEPKNALVKQYKTLLSYDGVDLEFDQEALEAIAQKA 348

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     ++ T V
Sbjct: 349 IERKT-----GARGLRSIIEETMMDIMFEVPSQEDVTSV 382


>gi|307729639|ref|YP_003906863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323526046|ref|YP_004228199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
 gi|307584174|gb|ADN57572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323383048|gb|ADX55139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
          Length = 423

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R + L      EL   NILL+GPTG GK
Sbjct: 68  GPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF       V R                            P DL+    
Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    ++ A+A 
Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L++++E+ L D+ +    ++  + VI
Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397


>gi|284990115|ref|YP_003408669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
 gi|284063360|gb|ADB74298.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
          Length = 423

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRD---ELMPKNILLVGPTGV 64
           P+EI   L++Y+IGQ  AKRA+++A+ N ++R Q   A  RD   EL   NILL+GPTG 
Sbjct: 64  PKEIHDFLEQYVIGQDKAKRALSVAVYNHYKRVQAGGAGSRDDSVELAKSNILLMGPTGC 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 179 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAFHVSR----------------------------------PADLL---- 313
           +T ++LFI  GAF                                      P DLL    
Sbjct: 239 DTTNVLFIVGGAFAGLEKIIEQRAGKQGIGFGAEVRGKKEIEEANAFAEVMPEDLLKFGM 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   ++ L++     ILT+ ++ L+ QY+ L + +G+ L+FT+D+++++AD
Sbjct: 299 IPEFIGRLPVITSVEKLDRDALMNILTEPKNALVRQYRRLFELDGVELEFTDDALESIAD 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +      +  +VVI  E V  H+
Sbjct: 359 QAI-LRGT----GARGLRAIMEEVLQSVMYDVPSRDDVASVVITREVVLEHV 405


>gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           mossii DSM 22836]
          Length = 411

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAV 234

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIERKIAQRLNTMVVGYASSKNNAQVDRNNLLQYVAPQDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L +L++S  R ILT+ ++++I QY +L K +G+ L F +D  + + D 
Sbjct: 295 PEIIGRLPILTYLDALDRSALRRILTEPKNSIIKQYVKLFKMDGVDLTFEDDVYEYIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           AV        +GAR L++++E ++ D  F+    ++  + +  EY
Sbjct: 355 AVEYK-----LGARGLRSIVETIMMDAMFNIPSTKQAQLHVTKEY 394



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 66/102 (64%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I   LD YIIGQ++AKR +++A+ N ++R     +   E+   NI++VGPTG GKT 
Sbjct: 64  PKKIKEYLDGYIIGQENAKRYLSVAVYNHYKRILQGKEDDIEIEKSNIIMVGPTGTGKTL 123

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  +
Sbjct: 124 LARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAS 165


>gi|302187982|ref|ZP_07264655.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae 642]
          Length = 427

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400


>gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit [Desulfococcus
           oleovorans Hxd3]
 gi|238686897|sp|A8ZXB8|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus
           oleovorans Hxd3]
          Length = 417

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
            +P+EI + LD Y+I Q+ AK+A+A+A+ N ++R        D E+   NILL+GPTG G
Sbjct: 61  LAPKEIKTLLDDYVIEQERAKKALAVAVYNHYKRLDTSVKTSDVEIQKSNILLIGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 121 KTLLAQTLARFLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDVEKAQR 174



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  R     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 175 GIVYVDEIDKIAQRSDNPSITRDVSGEGVQQALLKIMEGTLASVPPKGGRKHPQQDFVKV 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  G F                                   +  P DL+    
Sbjct: 235 DTTNILFICGGTFTGLDKLIERRVGEKTIGFGSKVTGEKDKNYNQSLQLVEPQDLIRFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT+ ++ LI Q+++L + EG+ L FT+ ++  +A 
Sbjct: 295 IPEFLGRLPIIVTLDELSEESLVKILTEPKNALIKQFQKLFEIEGVNLRFTDSALATVAS 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYVR 420
           +A+   S     GAR L++++E  + D+ +     QE  K  VI  E ++
Sbjct: 355 LAMKRKS-----GARGLRSILESCMLDLMYEIPS-QEGVKECVIGEEVIK 398


>gi|77459918|ref|YP_349425.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf0-1]
 gi|123730994|sp|Q3K9X0|CLPX_PSEPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77383921|gb|ABA75434.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Pseudomonas fluorescens Pf0-1]
          Length = 427

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400


>gi|85704730|ref|ZP_01035831.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
 gi|85670548|gb|EAQ25408.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
          Length = 422

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AK+ +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 65  APRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDARGIGEIFTDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + EG  L FT+D++ A++ 
Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFELEGAQLSFTDDALKAISK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++  + V+++ E V
Sbjct: 357 RAIARKT-----GARGLRSILEDILLDTMFDLPSMEHVEEVLVNEEAV 399


>gi|300788575|ref|YP_003768866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis
           mediterranei U32]
 gi|299798089|gb|ADJ48464.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis
           mediterranei U32]
          Length = 431

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDE---LMPKNILLVG 60
           P +I   L++YIIGQ+DAKR +A+A+ N ++R Q      P D ++E   L   NIL++G
Sbjct: 64  PADIHEFLEQYIIGQEDAKRTLAVAVYNHYKRIQADDKAGPKDSKEESVELAKSNILMLG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 PTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T ++LFI +GAF                                    + P DL+    
Sbjct: 243 DTTNVLFIVAGAFAGLEKIINERVGKRGLGFGAEIRTKSEIEESDVFSDTMPEDLIKFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L+K     ILT   + L+ QYK+L + + + L+FT+ +++A+AD
Sbjct: 303 IPEFIGRLPVVATVNHLDKDSLVNILTQPRNALVKQYKKLFEMDNVELEFTKTALEAIAD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV L  T    GAR L+ +ME VL+ + +
Sbjct: 363 QAV-LRGT----GARGLRAIMEEVLQPVMY 387


>gi|153814159|ref|ZP_01966827.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|317499958|ref|ZP_07958194.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087819|ref|ZP_08336744.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848555|gb|EDK25473.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|316898675|gb|EFV20710.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409514|gb|EGG88955.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 423

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 57/212 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235

Query: 291 INTDHILFIASGAFH---------VSR-------------------------PADL---- 312
           I+T +ILFI  GAF          + R                         P DL    
Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRLDRKSIGFNAEIAEKHEYDMDVLLQEVLPQDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F  D++ A+A
Sbjct: 296 LIPELIGRLPVTVTLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDRDALIAVA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +  +   +     GAR L+ +ME+++ D  + 
Sbjct: 356 ETTLKRKT-----GARGLRAIMEKIMMDTMYQ 382


>gi|16763830|ref|NP_459445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56414395|ref|YP_151470.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179061|ref|YP_215478.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615357|ref|YP_001589321.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167990433|ref|ZP_02571533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231438|ref|ZP_02656496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237564|ref|ZP_02662622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261114|ref|ZP_02683087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465543|ref|ZP_02699425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818939|ref|ZP_02830939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445635|ref|YP_002039692.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194451482|ref|YP_002044484.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471272|ref|ZP_03077256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734820|ref|YP_002113480.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197250772|ref|YP_002145430.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263118|ref|ZP_03163192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363315|ref|YP_002142952.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198242558|ref|YP_002214403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390026|ref|ZP_03216637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205351760|ref|YP_002225561.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|224582287|ref|YP_002636085.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238911420|ref|ZP_04655257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|21263472|sp|Q8ZRC0|CLPX_SALTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81309773|sp|Q57SB4|CLPX_SALCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81360133|sp|Q5PFN5|CLPX_SALPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044148|sp|A9MWX5|CLPX_SALPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689941|sp|B5BD82|CLPX_SALPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690000|sp|B5EXI9|CLPX_SALA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690231|sp|B4T9E4|CLPX_SALHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690324|sp|B5FKV4|CLPX_SALDC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690478|sp|B5R6V0|CLPX_SALG2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690697|sp|B4TMC7|CLPX_SALSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693543|sp|B4SWU2|CLPX_SALNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763861|sp|C0Q7X4|CLPX_SALPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16418956|gb|AAL19404.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128652|gb|AAV78158.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62126694|gb|AAX64397.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364721|gb|ABX68489.1| hypothetical protein SPAB_03128 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404298|gb|ACF64520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409786|gb|ACF70005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457636|gb|EDX46475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710322|gb|ACF89543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631578|gb|EDX50098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094792|emb|CAR60325.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214475|gb|ACH51872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241373|gb|EDY23993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289504|gb|EDY28867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937074|gb|ACH74407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602471|gb|EDZ01017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205271541|emb|CAR36359.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330906|gb|EDZ17670.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333989|gb|EDZ20753.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344101|gb|EDZ30865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349962|gb|EDZ36593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224466814|gb|ACN44644.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261245732|emb|CBG23529.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992165|gb|ACY87050.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157060|emb|CBW16544.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911482|dbj|BAJ35456.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084723|emb|CBY94514.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226027|gb|EFX51078.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614727|gb|EFY11656.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618833|gb|EFY15721.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623540|gb|EFY20379.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629161|gb|EFY25940.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631882|gb|EFY28636.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637381|gb|EFY34083.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642066|gb|EFY38676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647885|gb|EFY44360.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652563|gb|EFY48917.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653275|gb|EFY49608.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660576|gb|EFY56812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664728|gb|EFY60921.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669219|gb|EFY65369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670764|gb|EFY66897.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678997|gb|EFY75052.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682026|gb|EFY78051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685145|gb|EFY81142.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713522|gb|EFZ05093.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128769|gb|ADX16199.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192961|gb|EFZ78184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196957|gb|EFZ82099.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203942|gb|EFZ88959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206973|gb|EFZ91926.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214176|gb|EFZ98934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214500|gb|EFZ99251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223057|gb|EGA07400.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227006|gb|EGA11187.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230176|gb|EGA14296.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233914|gb|EGA18003.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238392|gb|EGA22450.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244079|gb|EGA28088.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246240|gb|EGA30223.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251866|gb|EGA35729.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257863|gb|EGA41542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261124|gb|EGA44716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264946|gb|EGA48445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272509|gb|EGA55916.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622152|gb|EGE28497.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626795|gb|EGE33138.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987398|gb|AEF06381.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 423

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|84515417|ref|ZP_01002779.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510700|gb|EAQ07155.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AKR +++A+ N ++R    AD  D EL   NI+L+GPTG GK
Sbjct: 65  TPSDICAVLDDYVIGQVHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNIMLIGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      ++R                             P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIARRSKGSGMGFGADVKDVDERGIGEVFQDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFELENTKLTFTDDALTAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 357 RAIKRKT-----GARGLRSIMEGILLDTMFDLPGMDTVTEVVVNEEAV 399


>gi|163731526|ref|ZP_02138973.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
 gi|161394980|gb|EDQ19302.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P++I + LD Y+IGQ  AKR +++A+ N ++R    Q   D+  EL   NILL+GPTG 
Sbjct: 65  TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRGNDDRGVGEIFTDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELSFTDDALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L +  F    L   T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEDILLNTMFELPGLDSVTEVVVNEEAV 400


>gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp.
           MWYL1]
 gi|226706592|sp|A6VW21|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MWYL1]
          Length = 426

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P ++ + LD Y+IGQ  AKR +A+A+ N ++R   Q   D   EL   NILL+GPTG G
Sbjct: 70  TPAKLSAALDDYVIGQDKAKRVLAVAVYNHYKRLRHQGKTDTSIELGKSNILLIGPTGSG 129

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 183



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H     DL    
Sbjct: 244 DTSNILFICGGAFAGLERVISDRTEKSSIGFSATVKSKEEGRSFSEAVHRVETEDLVKFG 303

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     IL+  ++ L+ QY+ L + EG+ L+FT +S+   A
Sbjct: 304 LIPEFVGRLPVVATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPESLREAA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
            +A+   +     GAR L++++E  L D  +      +   VV+DA  +R
Sbjct: 364 KLALERKT-----GARGLRSILESALLDCMYELPTRNDVVKVVMDATSIR 408


>gi|239815494|ref|YP_002944404.1| ATP-dependent protease ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
 gi|259491272|sp|C5CJT5|CLPX_VARPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239802071|gb|ACS19138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +++A+ N ++R +     +    EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQR 181



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGASVKSKAQRSITEVFREVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L++ EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386


>gi|167032911|ref|YP_001668142.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           GB-1]
 gi|189044143|sp|B0KJG7|CLPX_PSEPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166859399|gb|ABY97806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida GB-1]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D++ A+A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     +E   VVID
Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKEVSKVVID 400


>gi|301631595|ref|XP_002944883.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like
           [Xenopus (Silurana) tropicalis]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +    AD  + EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDNYVIGQEKAKRTLAVAVYNHYKRLRYKDKADKDEVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR    PF+  + T  TE GYVG +VE II  L+      V +++R
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIISKLLQSCNYDVEKAQR 181



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T ++LFI  GAF                             +S       P DL+    
Sbjct: 242 DTTNVLFICGGAFAGLEKVIENRTEASGIGFGAAVRSKQQRSISEVFQDIEPEDLIKFGI 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L  QY +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVTSLAELSEDALVQILTEPKNALAKQYSKLLSMEGVELEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L++++E+ L
Sbjct: 362 KALARKT-----GARGLRSILEQAL 381


>gi|82542926|ref|YP_406873.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           Sb227]
 gi|123560438|sp|Q325G3|CLPX_SHIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81244337|gb|ABB65045.1| ATP-dependent specificity component of clpP serine protease
           [Shigella boydii Sb227]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L D  +    ++  EK V+
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKGVI 398


>gi|229824054|ref|ZP_04450123.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271]
 gi|229786408|gb|EEP22522.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P EI++ L++Y+IGQ +AK+++A+A+ N ++R        +   EL   NI L+GPTG
Sbjct: 64  LKPAEIMAHLNQYVIGQTEAKKSLAVAVYNHYKRINASIATHEADIELQKSNICLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+L   PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 124 SGKTFLAQSLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLVQAA 170



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 55/209 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          
Sbjct: 179 HGIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIANIPPKGGRKHPNQEFIQ 238

Query: 291 INTDHILFIASGAF--------------------------------HVSRPADLL----- 313
           ++T  ILFI  GAF                                      DLL     
Sbjct: 239 LDTSQILFIVGGAFDGIESIVKERLGSKVIGFGSSNGKLDQSKSLMQQVTSEDLLKFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L + D   ILT+ ++ L+ QY+ L + +G+ L+F E ++ A+A  
Sbjct: 299 PEFIGRLPVMAMLEKLTQEDLVRILTEPKNALVKQYQRLFQIDGVELEFKEKALIAIAKQ 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E V+ DI F
Sbjct: 359 AIERNT-----GARGLRSILESVMLDIMF 382


>gi|70731345|ref|YP_261086.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf-5]
 gi|68345644|gb|AAY93250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf-5]
          Length = 438

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKSDDVELGKSNILLIGPTGSG 137

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 138 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 252 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 311

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411


>gi|148548676|ref|YP_001268778.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           F1]
 gi|166214807|sp|A5W634|CLPX_PSEP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148512734|gb|ABQ79594.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           putida F1]
 gi|313499613|gb|ADR60979.1| ClpX [Pseudomonas putida BIRD-1]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D++ A+A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     ++   VVID
Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVID 400


>gi|300930259|ref|ZP_07145672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
 gi|300461831|gb|EFK25324.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPIVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|269914476|pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914477|pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914478|pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914479|pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914480|pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914481|pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
          Length = 363

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 5   TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 58

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 59  PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 117



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++D+ DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 177

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 178 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 297

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 298 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 338


>gi|229591361|ref|YP_002873480.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens SBW25]
 gi|259491265|sp|C3JYJ9|CLPX_PSEFS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229363227|emb|CAY50310.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Pseudomonas fluorescens SBW25]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400


>gi|329908484|ref|ZP_08274874.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546711|gb|EGF31662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   L +Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQEICELLGQYVIGQDGAKRILSVAVYNHYKRLRHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF+  + T  TE GYVG +VE II+ L+   
Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQAC 170



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +I+FI  GAF                                    + P DL+    
Sbjct: 240 DTTNIMFICGGAFDGLAKIVSNRSEKSGIGFSASVKSQSERSASEMLLEAEPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     IL + ++ LI QY  L++ EG  L+    ++ A+A 
Sbjct: 300 IPELVGRLPVVATLSELTEDAMIQILLEPKNALIKQYARLLQMEGAELEVRPAALQAIAR 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ F   + Q    VVID
Sbjct: 360 KALQRKT-----GARGLRSILEHALLDVMFELPNQQNVSKVVID 398


>gi|325274290|ref|ZP_08140401.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
           TJI-51]
 gi|324100573|gb|EGB98308.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
           TJI-51]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D++ A+A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALVQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     ++   VVID
Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 400


>gi|301330695|ref|ZP_07223297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
 gi|300843356|gb|EFK71116.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIFHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|110680062|ref|YP_683069.1| ATP-dependent protease ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
 gi|123361806|sp|Q165G0|CLPX_ROSDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|109456178|gb|ABG32383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P++I + LD Y+IGQ  AKR +++A+ N ++R    Q   D+  EL   NILL+GPTG 
Sbjct: 65  TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRGNDDRGVGEIFTDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    L+  T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAV 400


>gi|261337233|ref|ZP_05965117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium gallicum DSM 20093]
 gi|270277588|gb|EFA23442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium gallicum DSM 20093]
          Length = 477

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 60/231 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSV-----STKYGS---- 290
           +GIV++DE DKI AR SG+   ++R    EGVQ+ LL L+EG+ V       + G     
Sbjct: 193 HGIVYIDEIDKI-ARKSGDNTSLTRDVSGEGVQQALLKLMEGTIVDVPIEHARKGKEAQT 251

Query: 291 --INTDHILFIASGAF-------------HVS--------RPAD---------------- 311
             I+T ++LFI +GAF             H S         P D                
Sbjct: 252 VRIDTRNVLFICAGAFVGLNDIVERRLGRHESGFGSALRTAPLDHVTLENAVSADDLADF 311

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            LLPE  GR PV   LK L++ D + +LT     L  QY +L  T+G+ L FT+D+I+ +
Sbjct: 312 GLLPEFIGRVPVVSVLKQLDEHDLQAVLTQPRDALTKQYAKLFATDGVDLRFTQDAIEEI 371

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+  ++     GAR L+ +MER LE   F      +   V++DA  +R
Sbjct: 372 AHQAIASHT-----GARGLRAIMERALESTMFELPSHDDVVAVIVDAPSIR 417



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPADLRDE 50
           +P  I ++L+  ++GQ  AKR +++A+ N ++R                   +P  L D 
Sbjct: 64  TPASINAKLNDTVVGQAAAKRTLSVAVHNHYKRVLMEEREALGAADGSHHHAMPQALVDV 123

Query: 51  LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            + K NILL+GPTGVGKT +++ LA     PFI  + T  TE GYVG +VE ++  L+
Sbjct: 124 RVSKSNILLIGPTGVGKTYLAQTLADAMDVPFIIADATSLTEAGYVGDDVETLLSRLL 181


>gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium
           sp. Marseille]
 gi|166214779|sp|A6SY75|CLPX_JANMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151280777|gb|ABR89187.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Janthinobacterium sp. Marseille]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+E+   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQELCELLDQYVIGQNPAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF+  + T  TE GYVG +VE II+ L+
Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S             +  I
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T +I+FI  GAF                                    + P DL+    
Sbjct: 240 DTTNIMFICGGAFDGLAKIISERSEKSGIGFSASVKSREERTASQVMMDTEPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L+ L++     IL + ++ LI QY +L++ EG  L+    ++ A+A 
Sbjct: 300 IPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAK 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ F   + Q    VVID
Sbjct: 360 KAIARKT-----GARGLRSILEHALLDVMFELPNEQNVAKVVID 398


>gi|15800168|ref|NP_286180.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 EDL933]
 gi|15829746|ref|NP_308519.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128423|ref|NP_414972.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|24111822|ref|NP_706332.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 301]
 gi|26246449|ref|NP_752488.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           CFT073]
 gi|30061940|ref|NP_836111.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 2457T]
 gi|74311013|ref|YP_309432.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sonnei
           Ss046]
 gi|82775655|ref|YP_402002.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella
           dysenteriae Sd197]
 gi|89107308|ref|AP_001088.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. W3110]
 gi|91209512|ref|YP_539498.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UTI89]
 gi|110640699|ref|YP_668427.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           536]
 gi|110804466|ref|YP_687986.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           5 str. 8401]
 gi|117622698|ref|YP_851611.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|157157655|ref|YP_001461625.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           E24377A]
 gi|157159965|ref|YP_001457283.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           HS]
 gi|168754543|ref|ZP_02779550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768393|ref|ZP_02793400.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778931|ref|ZP_02803938.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786289|ref|ZP_02811296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|170021189|ref|YP_001726143.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ATCC 8739]
 gi|170080024|ref|YP_001729344.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170682782|ref|YP_001742582.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SMS-3-5]
 gi|187730793|ref|YP_001879149.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           CDC 3083-94]
 gi|188492973|ref|ZP_03000243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|193064164|ref|ZP_03045248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208807403|ref|ZP_03249740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814875|ref|ZP_03256054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822907|ref|ZP_03263225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398902|ref|YP_002269085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917655|ref|YP_002291739.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SE11]
 gi|215485519|ref|YP_002327950.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325849|ref|ZP_03441933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218553005|ref|YP_002385918.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI1]
 gi|218557348|ref|YP_002390261.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           S88]
 gi|218688302|ref|YP_002396514.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ED1a]
 gi|218693901|ref|YP_002401568.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           55989]
 gi|218698650|ref|YP_002406279.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI39]
 gi|218703722|ref|YP_002411241.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UMN026]
 gi|227884551|ref|ZP_04002356.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|237707567|ref|ZP_04538048.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|238899726|ref|YP_002925522.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|253774573|ref|YP_003037404.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160507|ref|YP_003043615.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli B
           str. REL606]
 gi|254791622|ref|YP_003076459.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020410|ref|ZP_05434275.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sp. D9]
 gi|256023943|ref|ZP_05437808.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia sp.
           4_1_40B]
 gi|260842639|ref|YP_003220417.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|260853661|ref|YP_003227552.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|260866599|ref|YP_003233001.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|261223921|ref|ZP_05938202.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256365|ref|ZP_05948898.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK966]
 gi|291281345|ref|YP_003498163.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|293403559|ref|ZP_06647650.1| ClpX [Escherichia coli FVEC1412]
 gi|293408588|ref|ZP_06652427.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|293413693|ref|ZP_06656342.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|293418509|ref|ZP_06660944.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|298379171|ref|ZP_06989052.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|300818230|ref|ZP_07098441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300820316|ref|ZP_07100468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300900509|ref|ZP_07118676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300903294|ref|ZP_07121222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300918179|ref|ZP_07134786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300924165|ref|ZP_07140157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300937055|ref|ZP_07151921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300947909|ref|ZP_07162057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300958006|ref|ZP_07170170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300988007|ref|ZP_07178487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300997373|ref|ZP_07181713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|301022568|ref|ZP_07186440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|301025666|ref|ZP_07189184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|301301589|ref|ZP_07207724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301647364|ref|ZP_07247176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|306813094|ref|ZP_07447287.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|307137083|ref|ZP_07496439.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           H736]
 gi|307312184|ref|ZP_07591820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|309787030|ref|ZP_07681642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309794829|ref|ZP_07689250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|312964537|ref|ZP_07778793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312970534|ref|ZP_07784715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|331640958|ref|ZP_08342093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331645614|ref|ZP_08346718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331651376|ref|ZP_08352401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331656495|ref|ZP_08357457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331661819|ref|ZP_08362742.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331666793|ref|ZP_08367667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331671985|ref|ZP_08372781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331676110|ref|ZP_08376822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331681833|ref|ZP_08382466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332281589|ref|ZP_08394002.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|62288037|sp|P0A6H1|CLPX_ECOLI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288038|sp|P0A6H2|CLPX_ECOL6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288039|sp|P0A6H3|CLPX_ECO57 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288040|sp|P0A6H4|CLPX_SHIFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122424751|sp|Q1RF97|CLPX_ECOUT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122957619|sp|Q0T7E5|CLPX_SHIF8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123049431|sp|Q0TKK3|CLPX_ECOL5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123563420|sp|Q32JJ4|CLPX_SHIDS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123617887|sp|Q3Z4W5|CLPX_SHISS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214775|sp|A1A8A7|CLPX_ECOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009013|sp|A7ZIJ6|CLPX_ECO24 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009014|sp|A7ZX96|CLPX_ECOHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044134|sp|B1J010|CLPX_ECOLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706586|sp|B7MD97|CLPX_ECO45 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706587|sp|B7NJ56|CLPX_ECO7I RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706588|sp|B7M3T1|CLPX_ECO8A RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706589|sp|B7N8Z2|CLPX_ECOLU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706590|sp|B1LJJ5|CLPX_ECOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229889854|sp|B1XFM6|CLPX_ECODH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066655|sp|B5Z3U5|CLPX_ECO5E RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066656|sp|B6HZP5|CLPX_ECOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689516|sp|B2U4P3|CLPX_SHIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763846|sp|B7UJR1|CLPX_ECO27 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763847|sp|B7L675|CLPX_ECO55 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763848|sp|B7MQF4|CLPX_ECO81 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491256|sp|C4ZTJ5|CLPX_ECOBW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12513300|gb|AAG54788.1|AE005223_3 ATP-dependent specificity component of clpP serine protease,
           chaperone [Escherichia coli O157:H7 str. EDL933]
 gi|26106847|gb|AAN79032.1|AE016756_215 ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli CFT073]
 gi|347729|gb|AAA16116.1| ATP-dependent protease ATPase subunit [Escherichia coli]
 gi|1773122|gb|AAB40194.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786642|gb|AAC73541.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|13359949|dbj|BAB33915.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli O157:H7 str. Sakai]
 gi|24050613|gb|AAN42039.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 301]
 gi|30040184|gb|AAP15917.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 2457T]
 gi|73854490|gb|AAZ87197.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Shigella sonnei Ss046]
 gi|81239803|gb|ABB60513.1| ATP-dependent specificity component of clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|85674578|dbj|BAE76218.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K12 substr. W3110]
 gi|91071086|gb|ABE05967.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Escherichia coli UTI89]
 gi|110342291|gb|ABG68528.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli 536]
 gi|110614014|gb|ABF02681.1| ATP-dependent protease ATP-binding subunit protease [Shigella
           flexneri 5 str. 8401]
 gi|115511822|gb|ABI99896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli APEC O1]
 gi|157065645|gb|ABV04900.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli HS]
 gi|157079685|gb|ABV19393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E24377A]
 gi|169756117|gb|ACA78816.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli ATCC 8739]
 gi|169887859|gb|ACB01566.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170520500|gb|ACB18678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli SMS-3-5]
 gi|187427785|gb|ACD07059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii CDC 3083-94]
 gi|188488172|gb|EDU63275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|189002703|gb|EDU71689.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357986|gb|EDU76405.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362383|gb|EDU80802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373571|gb|EDU91987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|192929193|gb|EDV82803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208727204|gb|EDZ76805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208731523|gb|EDZ80211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737100|gb|EDZ84784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209160302|gb|ACI37735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209743844|gb|ACI70229.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743846|gb|ACI70230.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743848|gb|ACI70231.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743850|gb|ACI70232.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743852|gb|ACI70233.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209910914|dbj|BAG75988.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE11]
 gi|215263591|emb|CAS07921.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O127:H6 str. E2348/69]
 gi|217322070|gb|EEC30494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350633|emb|CAU96325.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli 55989]
 gi|218359773|emb|CAQ97314.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI1]
 gi|218364117|emb|CAR01782.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli S88]
 gi|218368636|emb|CAR16375.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI39]
 gi|218425866|emb|CAR06672.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli ED1a]
 gi|218430819|emb|CAR11693.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli UMN026]
 gi|222032233|emb|CAP74972.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli LF82]
 gi|226898777|gb|EEH85036.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|227838637|gb|EEJ49103.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|238860036|gb|ACR62034.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|242376219|emb|CAQ30910.1| clpX, subunit of ClpX ATP-dependent protease specificity component
           and chaperone, ClpXP and ClpAXP [Escherichia coli
           BL21(DE3)]
 gi|253325617|gb|ACT30219.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972408|gb|ACT38079.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str.
           REL606]
 gi|253976618|gb|ACT42288.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           BL21(DE3)]
 gi|254591022|gb|ACT70383.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. TW14359]
 gi|257752310|dbj|BAI23812.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|257757786|dbj|BAI29283.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|257762955|dbj|BAI34450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|260450375|gb|ACX40797.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|281599778|gb|ADA72762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Shigella
           flexneri 2002017]
 gi|284920248|emb|CBG33307.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           042]
 gi|290761218|gb|ADD55179.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|291325037|gb|EFE64452.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|291429412|gb|EFF02432.1| ClpX [Escherichia coli FVEC1412]
 gi|291433751|gb|EFF06724.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|291464929|gb|ADE05991.1| ATP-dependent protease ClpX [Escherichia coli]
 gi|291471766|gb|EFF14249.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|294493190|gb|ADE91946.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli IHE3034]
 gi|298280284|gb|EFI21788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|299880020|gb|EFI88231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|300304192|gb|EFJ58712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|300315273|gb|EFJ65057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300355990|gb|EFJ71860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300397449|gb|EFJ80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|300404589|gb|EFJ88127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300407559|gb|EFJ91097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300414630|gb|EFJ97940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300419618|gb|EFK02929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300452509|gb|EFK16129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300457886|gb|EFK21379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300527101|gb|EFK48170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300529121|gb|EFK50183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300843086|gb|EFK70846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301074509|gb|EFK89315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|305853857|gb|EFM54296.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|306907686|gb|EFN38188.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|307552345|gb|ADN45120.1| ATP-dependent specificity component of ClpP serine protease
           [Escherichia coli ABU 83972]
 gi|307628092|gb|ADN72396.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UM146]
 gi|308121482|gb|EFO58744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|308924608|gb|EFP70103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309700699|emb|CBI99995.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ETEC H10407]
 gi|310337183|gb|EFQ02321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|312290771|gb|EFR18648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312945016|gb|ADR25843.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646935|gb|EFS11392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2a str. 2457T]
 gi|315059718|gb|ADT74045.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli W]
 gi|315135120|dbj|BAJ42279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|315256266|gb|EFU36234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 85-1]
 gi|315289844|gb|EFU49234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 110-3]
 gi|315294228|gb|EFU53579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 153-1]
 gi|315299562|gb|EFU58810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 16-3]
 gi|315616621|gb|EFU97238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 3431]
 gi|320186068|gb|EFW60813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           flexneri CDC 796-83]
 gi|320192854|gb|EFW67494.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC1212]
 gi|320197088|gb|EFW71707.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli WV_060327]
 gi|320201682|gb|EFW76258.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli EC4100B]
 gi|320638433|gb|EFX08147.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. G5101]
 gi|320643814|gb|EFX12937.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. 493-89]
 gi|320649165|gb|EFX17743.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. H 2687]
 gi|320656058|gb|EFX23974.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661208|gb|EFX28639.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665184|gb|EFX32277.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153475|gb|EFZ39729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli EPECa14]
 gi|323160451|gb|EFZ46399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E128010]
 gi|323164239|gb|EFZ50046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           sonnei 53G]
 gi|323170524|gb|EFZ56174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli LT-68]
 gi|323178293|gb|EFZ63871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1180]
 gi|323184731|gb|EFZ70102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1357]
 gi|323191358|gb|EFZ76621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli RN587/1]
 gi|323379717|gb|ADX51985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli KO11]
 gi|323938624|gb|EGB34873.1| ATP-dependent Clp protease [Escherichia coli E1520]
 gi|323943245|gb|EGB39401.1| ATP-dependent Clp protease [Escherichia coli E482]
 gi|323945343|gb|EGB41399.1| ATP-dependent Clp protease [Escherichia coli H120]
 gi|323952950|gb|EGB48818.1| ATP-dependent Clp protease [Escherichia coli H252]
 gi|323958631|gb|EGB54334.1| ATP-dependent Clp protease [Escherichia coli H263]
 gi|323963428|gb|EGB58990.1| ATP-dependent Clp protease [Escherichia coli H489]
 gi|323965125|gb|EGB60584.1| ATP-dependent Clp protease [Escherichia coli M863]
 gi|323972292|gb|EGB67502.1| ATP-dependent Clp protease [Escherichia coli TA007]
 gi|323976077|gb|EGB71170.1| ATP-dependent Clp protease [Escherichia coli TW10509]
 gi|324010069|gb|EGB79288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 57-2]
 gi|324010652|gb|EGB79871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 60-1]
 gi|324016701|gb|EGB85920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 117-3]
 gi|324116926|gb|EGC10839.1| ATP-dependent Clp protease [Escherichia coli E1167]
 gi|326341202|gb|EGD64994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1044]
 gi|326346023|gb|EGD69762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1125]
 gi|327254766|gb|EGE66382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli STEC_7v]
 gi|330910232|gb|EGH38742.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli AA86]
 gi|331037756|gb|EGI09976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331045776|gb|EGI17902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331051117|gb|EGI23169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331054743|gb|EGI26752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331060241|gb|EGI32205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331066017|gb|EGI37901.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331070974|gb|EGI42333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331076168|gb|EGI47450.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331081035|gb|EGI52200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332094594|gb|EGI99640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 5216-82]
 gi|332098459|gb|EGJ03425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 3594-74]
 gi|332103941|gb|EGJ07287.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|332341802|gb|AEE55136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli UMNK88]
 gi|332760729|gb|EGJ91017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 4343-70]
 gi|332761521|gb|EGJ91803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2747-71]
 gi|332763736|gb|EGJ93974.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-671]
 gi|332768359|gb|EGJ98543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2930-71]
 gi|333007845|gb|EGK27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-218]
 gi|333008124|gb|EGK27599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri VA-6]
 gi|333010899|gb|EGK30325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-272]
 gi|333020700|gb|EGK39960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-227]
 gi|333021843|gb|EGK41091.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-304]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|218247704|ref|YP_002373075.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           8801]
 gi|257060959|ref|YP_003138847.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           8802]
 gi|226706582|sp|B7JW74|CLPX_CYAP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218168182|gb|ACK66919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 8801]
 gi|256591125|gb|ACV02012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 8802]
          Length = 448

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 77/127 (60%), Gaps = 9/127 (7%)

Query: 2   KLTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LM 52
           +L+FN    PREI   LD Y+IGQ +AK+ +++A+ N ++R  L +   +E       L 
Sbjct: 76  RLSFNQIPKPREIKKYLDEYVIGQDEAKKVLSVAVYNHYKRLSLASKPGEETSEDHIELQ 135

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA  
Sbjct: 136 KSNILLMGPTGSGKTLLAQTLAQILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADL 195

Query: 113 IVRESRR 119
            V E++R
Sbjct: 196 DVEEAQR 202



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311
           +T +ILFI  GAF                   RP D                        
Sbjct: 263 DTSNILFICGGAFVGLDKVIEQRRGKKSMGFIRPGDTNQSKEKRAADLMQQAEPDDLVKF 322

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR PV   L+ L++     ILT   + L+ QY++L+K + + L+F +D++ A+
Sbjct: 323 GMIPEFVGRIPVMASLEPLDEETLIAILTQPRNALVKQYQKLLKMDNVQLEFNKDAVRAI 382

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 383 AQEAYRRKT-----GARALRGIVEELMLDVMY 409


>gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
 gi|123379515|sp|Q1GPH4|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
          Length = 423

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 66  TPLEICQHLDAYVIGQNKAKRVLSVAVHNHYKRLANSGRGEDVELAKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 126 TLLAQTLARFLDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQR 178



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFIA GAF                    HV+ P +                   L
Sbjct: 239 DTTNILFIAGGAFAGLEKIIGDRLQGKSIGFGAHVAGPDERRAGEVLKQIEPEDLLKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+      IL + ++ L+ QYK+L   E + L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F   DL +   +V+D + V
Sbjct: 359 KAIERKT-----GARGLRSIVEAILLDTMFDLPDLTDVVEIVVDKDVV 401


>gi|319794077|ref|YP_004155717.1| ATP-dependent clp protease, ATP-binding subunit clpx [Variovorax
           paradoxus EPS]
 gi|315596540|gb|ADU37606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus EPS]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +++A+ N ++R +     +    EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQR 181



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                V R   P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGATVKSKAQRSITEVFREVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L++ EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+ L D  F
Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386


>gi|317123028|ref|YP_004103031.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter marianensis DSM 12885]
 gi|315593008|gb|ADU52304.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter marianensis DSM 12885]
          Length = 419

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NIL++GPTG GK
Sbjct: 63  KPAEIKAFLDQYVIGQERAKKILAVAVYNHYKRIHLGGRIDDVELQKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 236 DTTNILFICGGAFEGLDKIISSRIGRRVLGFGAEVRSKQETNVGEILRHIM-PEDLLKFG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L +L++     ILT+ ++ L+ QY +L+  + + L+F  +++ A+A
Sbjct: 295 LIPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYHKLLALDNVELEFEPEALRAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+  N+     GAR L+ ++E ++ D+ +
Sbjct: 355 QEALKRNT-----GARGLRAIVEELMLDLMY 380


>gi|298252431|ref|ZP_06976230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter
           racemifer DSM 44963]
 gi|297545664|gb|EFH79536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter
           racemifer DSM 44963]
          Length = 430

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I  +L  Y+IGQ+ AKRA+A+A+ N ++R  +   + D EL   NILL+GPTG GK
Sbjct: 67  APKKIYEQLSSYVIGQERAKRALAVAVYNHYKRIGVGMQIDDVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A  +I R  R
Sbjct: 127 TLLAQTLAKVLDVPFCIADATALTEAGYVGEDVENILLRLIQTADFDIARAER 179



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 62/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 180 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQDFIQI 239

Query: 292 NTDHILFIASGAFH--------------------------------------VSRPADLL 313
           NT +ILFI  GAF                                          P DLL
Sbjct: 240 NTSNILFICGGAFEGLEKIVEQRLGSNKMMGFSGVKPSGETAEQEKDQPILTKLNPDDLL 299

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV V L  L++     ILT+ ++ ++ QY++ ++ + + L FT D+++
Sbjct: 300 KFGLIPEFVGRLPVSVSLDPLDQEALVRILTEPKNAIVKQYQKFLQLDHVDLVFTSDALE 359

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A A+ A+   +     GAR L++++E VL D+ +   S    K V+I+ E +
Sbjct: 360 AAAERALKQKT-----GARGLRSIIEDVLLDVMYEIPSRADVKKVIINGEVI 406


>gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis]
          Length = 443

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPT 62
           T    P+EI   LD Y+IGQ+ +K+ +++A+ N ++R   L      E+   N+LL+GPT
Sbjct: 56  TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 116 GSGKTLLARTLARVLQIPFAMADATTLTEAGYVGEDVENILLKLLQAA 163


>gi|320173742|gb|EFW48925.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           dysenteriae CDC 74-1112]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|301049645|ref|ZP_07196594.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
 gi|300298582|gb|EFJ54967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VS-------------------------------RPADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISYRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|295695313|ref|YP_003588551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           tusciae DSM 2912]
 gi|295410915|gb|ADG05407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           tusciae DSM 2912]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P EI + LD+Y+IGQ  AK+++A+A+ N ++R   Q  P D+  EL   NILL+GPTG G
Sbjct: 64  PTEIRAILDQYVIGQDHAKKSLAVAVYNHYKRINAQGKPDDV--ELSKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH--------------------------VSR--------PADLL---- 313
           +T +ILFI  GAF                           +SR        P DLL    
Sbjct: 236 DTSNILFICGGAFDGLEQIIKRRLGRKVIGFGSEEARGTDLSRDEVLSKVLPEDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L +L+++  + IL + ++ L+ QY+ L++ + + L+FT++++  +A 
Sbjct: 296 IPEFVGRLPVITTLAALDETALKRILLEPKNALVKQYQRLLELDDVQLEFTDEALTEIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ D+ +
Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLDVMY 380


>gi|148269914|ref|YP_001244374.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170288599|ref|YP_001738837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281412205|ref|YP_003346284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
 gi|147735458|gb|ABQ46798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170176102|gb|ACB09154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281373308|gb|ADA66870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
          Length = 406

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFIA GAF                                   HV+ P DL  
Sbjct: 228 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 286

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T++++  
Sbjct: 287 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 346

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +A  A+   +     GAR L+ V E ++ D+ F   +L+    V+  E V L
Sbjct: 347 IAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 393


>gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 406

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPT 62
           T    P+EI   LD Y+IGQ+ +K+ +++A+ N ++R   L      E+   N+LL+GPT
Sbjct: 56  TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAA 163



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 107/228 (46%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 173 GIIYIDEVDKISRKSENTSITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232

Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314
           NTD+ILFI  GAF                        VS+  D              L+P
Sbjct: 233 NTDNILFIFGGAFDGLDKIIESRHRGSSMGFEANVQKVSKNKDIFCYTEPEDLVKFGLIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L++S    IL + +++L+ QYK+L + + I L F + ++  +A  A
Sbjct: 293 EFVGRIPVITSLGELDESTLCRILVEPKNSLVKQYKKLFEMDNINLQFDDSALSVIAKKA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
                 V   GAR L+ ++E +L D+ F    +SD+ +  VVI  E V
Sbjct: 353 -----AVRKTGARGLRAILEALLLDLMFESPGSSDVNQ--VVISKEMV 393


>gi|84499431|ref|ZP_00997719.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
 gi|84392575|gb|EAQ04786.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ+ AKR +++A+ N ++R    A      EL   NILL+GPTG G
Sbjct: 65  TPQEICDVLDDYVIGQKIAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVEKAQR 178



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDERGVGEVFQDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D++ A++ 
Sbjct: 299 IPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDARLTFTDDALSAISR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMF 383


>gi|240146205|ref|ZP_04744806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|257201661|gb|EEU99945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|291536690|emb|CBL09802.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis M50/1]
 gi|291537974|emb|CBL11085.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis XB6B4]
          Length = 423

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+ + LD Y+IGQ  AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 68  LKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNILMLGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  ++  A  NI R  R
Sbjct: 128 TLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIERAQR 180



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 181 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQI 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312
           +T +ILFI  GAF                                    + P D     L
Sbjct: 241 DTTNILFICGGAFDGLEKIIETRMDQKTIGFNADIRDKRDYNIGDVLKHALPQDFVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L++     IL + ++ L  QY++L + +G+ LDF +++++A+AD
Sbjct: 301 IPEFIGRVPVTVSLDMLDRDALIRILQEPKNALTKQYQKLFELDGVALDFDKEALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ +ME V  D+ +
Sbjct: 361 KALERKT-----GARGLRAIMEAVTLDLMY 385


>gi|261405360|ref|YP_003241601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. Y412MC10]
 gi|261281823|gb|ACX63794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. Y412MC10]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI   LD+Y+IGQ  AK+++++A+ N ++R    + + D EL   NILL+GPTG GKT
Sbjct: 64  PREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313
           +T +ILFI  GAF     ++ R                             P DLL    
Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ + + L F   +++A+A 
Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPSALEAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+  N+     GAR L++++E ++ D+ +      + K  VI  + VR
Sbjct: 356 EAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVITEQVVR 399


>gi|104781014|ref|YP_607512.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           entomophila L48]
 gi|95110001|emb|CAK14706.1| ATP-dependent Clp protease ATP-binding subunit [Pseudomonas
           entomophila L48]
          Length = 442

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 82  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 138 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 183



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 196 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 255

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 256 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 315

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D++ A+A
Sbjct: 316 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 375

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     +E   VVID
Sbjct: 376 RKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVID 415


>gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42]
 gi|190891273|ref|YP_001977815.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli
           CIAT 652]
 gi|123512322|sp|Q2K9U6|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238692521|sp|B3PVY5|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
 gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
           etli CIAT 652]
 gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli
           CNPAF512]
          Length = 425

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R      +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|320178280|gb|EFW53254.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           boydii ATCC 9905]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|78223079|ref|YP_384826.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           metallireducens GS-15]
 gi|123756422|sp|Q39UH3|CLPX_GEOMG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78194334|gb|ABB32101.1| ClpX, ATPase regulatory subunit [Geobacter metallireducens GS-15]
          Length = 417

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +    P+D+  E+   NILL+GPTG G
Sbjct: 66  PREIKDVLDEYVIGQDRAKKILAVAVYNHYKRIESMGKPSDV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 124 KTLLAQTLARILRVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILFI  GAF                         V +          P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDNIIQQRIGVKTLGFGADVKSKVEKKAGELLTDVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    IL + +S L+ QY++L + E + L FT+ S+ A+A 
Sbjct: 298 IPEFIGRLPVLATLHELDEAAMVQILKEPKSALVKQYQKLFEMEHVKLKFTDGSLVAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S    K VVI  + +
Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVISEDVI 400


>gi|61657345|emb|CAI44263.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga naphthophila
           RKU-10]
          Length = 413

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 64  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A
Sbjct: 124 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 167



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 175 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 234

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFIA GAF                                   HV+ P DL  
Sbjct: 235 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 293

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T++++  
Sbjct: 294 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 353

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +A  A+   +     GAR L+ V E ++ D+ F   +L+    V+  E V L
Sbjct: 354 IAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 400


>gi|256556953|gb|ACU83575.1| ATP-dependent protease Clp ATPase subunit [uncultured bacterium
           HF130_AEPn_2]
          Length = 427

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400


>gi|139437041|ref|ZP_01771201.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC
           25986]
 gi|133776688|gb|EBA40508.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 17/120 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------QQLPADL-RDE 50
           +P EI  EL  Y++GQ+DAKRA+++A+ N +RR                 Q   D+ + E
Sbjct: 107 TPHEIYDELSAYVMGQEDAKRAMSVAVYNHYRRVIEGGAAVSAFDDDMGSQFDDDMDKVE 166

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L++ A
Sbjct: 167 LAKSNILLLGPTGTGKTLLAQTLARILEVPFAIADATALTEAGYVGEDVENILLKLINAA 226



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV    G          I
Sbjct: 236 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 295

Query: 292 NTDHILFIASGAF--------------------HVSRPA-----DLL------------- 313
           +T +ILFI  GAF                     ++ P      DLL             
Sbjct: 296 DTTNILFICGGAFVGLDKIIADRVGNKGVGFNSEIAGPTSVDENDLLRQVLPQDLNAFGM 355

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV    ++L++ D   ILT+ ++ ++ QY+++ + E + L+F + ++  +A 
Sbjct: 356 IPEFVGRTPVVTQTQALDEDDLVSILTEPKNAVVRQYRKMFQLEDVELEFEDAALHEIAR 415

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+   +     GAR L+++ E VL+   F
Sbjct: 416 MALARKT-----GARGLRSICEDVLQQTMF 440


>gi|269914470|pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914471|pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914472|pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914473|pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914474|pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914475|pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
          Length = 363

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 5   TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 58

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 59  PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 117



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++D+ DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 177

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 178 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 297

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 298 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 338


>gi|225012270|ref|ZP_03702707.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
 gi|225003825|gb|EEG41798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
          Length = 411

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PAD-----LL 313
           +T +ILFIA GAF     H+S+                            P D     L+
Sbjct: 235 DTSNILFIAGGAFDGINSHISKRLNLQAIGYKTAQEQRNVDKENMLQYITPRDIRSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  ++  L+K+  R ILT  ++ L+ QY  L + + I L FT  ++D + D 
Sbjct: 295 PEIIGRLPVLTYMNPLDKATLREILTTPKNALVKQYIHLFEMDEIELQFTSGALDYIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  F       K + +  +Y
Sbjct: 355 ALQYK-----LGARGLRSLCEAILNDAMFELPQTDMKNLKVTKQY 394



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+EI + LD Y+IGQ+ +KR +++A+ N ++R    A  ++    E+   N+L+VGPTG 
Sbjct: 60  PKEIKAFLDTYVIGQESSKRVLSVAVYNHYKRLVQTASKKENDPVEIQKSNVLIVGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ ++RL   P   V+ T  TE GYVG +VE I+  L+  +
Sbjct: 120 GKTLLAQTISRLLNVPLAIVDATVLTEAGYVGEDVESILSRLLQAS 165


>gi|254477070|ref|ZP_05090456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
 gi|214031313|gb|EEB72148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+   D+  EL   NILL+GPTG
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 65/238 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAGVGETFKDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT++++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--------EKTVVIDAEYVRLH 422
            A+   +     GAR L++++E +L D  F    ++        E+ V  DA+ + +H
Sbjct: 359 RAIERKT-----GARGLRSILEDILLDTMFDLPGMESVEKVVVNEEAVTSDAQPLMIH 411


>gi|329923473|ref|ZP_08278954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. HGF5]
 gi|328941273|gb|EGG37568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. HGF5]
          Length = 421

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI   LD+Y+IGQ  AK+++++A+ N ++R    + + D EL   NILL+GPTG GKT
Sbjct: 64  PREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313
           +T +ILFI  GAF     ++ R                             P DLL    
Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ + + L F   +++A+A 
Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPGALEAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+  N+     GAR L++++E ++ D+ +      + K  VI  + VR
Sbjct: 356 EAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVITEQVVR 399


>gi|298480170|ref|ZP_06998368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D22]
 gi|298273451|gb|EFI15014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D22]
          Length = 414

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y ++ +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVTLDYAKMQL 403



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178


>gi|226944448|ref|YP_002799521.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter
           vinelandii DJ]
 gi|226719375|gb|ACO78546.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Azotobacter
           vinelandii DJ]
          Length = 426

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R     D +D  EL   NILL+GPTG G
Sbjct: 67  APKEISTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF--------------------HVSRP--------------------AD 311
           +T +ILFI  GAF                     V  P                      
Sbjct: 240 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSPDVGKKIGEALRDVEPDDLVKFG 299

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ A+A
Sbjct: 300 LIPEFVGRLPVIATLDELDEAALVQILTEPKNALTKQYGKLFEMEGVELEFRPDALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E VL D  +
Sbjct: 360 LRALERKT-----GARGLRSILEGVLLDTMY 385


>gi|281356560|ref|ZP_06243051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis
           vadensis ATCC BAA-548]
 gi|281316687|gb|EFB00710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis
           vadensis ATCC BAA-548]
          Length = 442

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 65/236 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 197 GIIYVDEIDKIARKTENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFLRI 256

Query: 292 NTDHILFIASGAF----------------------------------HVSR-------PA 310
           +T +ILFI  GAF                                  H+++       P 
Sbjct: 257 DTSNILFICGGAFVGLDKIIQRRCGKQVLGFKRLVDDEAEQAELDAEHLAKNPYAKCEPE 316

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL+     PE  GR PV   L+ L K D   IL + ++ LI QY+ L+  EG+ L+FTED
Sbjct: 317 DLIRFGLIPEFVGRLPVVTSLEPLRKEDLIRILKEPKNALIRQYQRLLGMEGVTLEFTED 376

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +++ALAD AV   +     GAR L+ ++E ++ D+ F A   +  +  VID   +R
Sbjct: 377 ALEALADKAVARGT-----GARGLRAILEEMMVDVMFDAPSREGISRCVIDGAVIR 427



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----RD-----ELMPKNIL 57
           SP EI +ELD+Y+IGQ+ AKR +A+A+ N ++R Q  A +     RD     EL   N+L
Sbjct: 75  SPAEIKAELDQYVIGQERAKRVLAVAVHNHYKRLQTQAGVHTSAARDLFSDVELDKSNVL 134

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           L+GPTG GKT ++R LARL   PF   + T  TE GYVG +VE II
Sbjct: 135 LLGPTGSGKTLLARTLARLLDVPFAICDATTLTEAGYVGEDVENII 180


>gi|207855929|ref|YP_002242580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|238690386|sp|B5QTJ7|CLPX_SALEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206707732|emb|CAR32017.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 423

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLALAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|124007707|ref|ZP_01692410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
 gi|123986829|gb|EAY26601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
          Length = 409

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS V+            K  +I
Sbjct: 173 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKMLEGSEVNVPPQGGRKHPEQKLITI 232

Query: 292 NTDHILFIASGAFH----------VSRPAD----------------------------LL 313
           NT++ILFI  GAF            +RP                              L+
Sbjct: 233 NTENILFICGGAFDGIDRMIASRLKTRPIGFAGEDDQDDIDRDNLLQYVASQDLKTFGLI 292

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L     R ILT+ ++ L+ QY++L   E I L F++ +++ + D 
Sbjct: 293 PELIGRLPVVTYLPPLTHETIRKILTEPKNALVKQYQKLFAMENIDLTFSDGALNYIVDK 352

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A+        +GAR L+++ E ++ D  F   SD +   ++ID  Y R
Sbjct: 353 AME-----SKLGARGLRSICEAIMTDAMFEVTSDSEHSELIIDETYAR 395



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELM--PKNILLVGPTGV 64
           PR++   +D++++GQ  AK+ + +A+ N ++R  Q+  +D  D+++    NI++VG TG 
Sbjct: 58  PRQMKEFIDQFVVGQDQAKKVMTVAVYNHYKRLMQKQQSDNTDDVVIEKSNIIMVGQTGT 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG ++E ++  L+  A
Sbjct: 118 GKTYLAKTLAKILQVPFCIADATVLTEAGYVGEDIENVLTRLLQAA 163


>gi|283784264|ref|YP_003364129.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
 gi|282947718|emb|CBG87273.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    L++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLEDVEKVVID 399


>gi|149201012|ref|ZP_01877987.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
 gi|149145345|gb|EDM33371.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AK+ +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 65  APRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF         R                            P DLL    
Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDARGVGEIFTDLEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + EG  L FTED++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFELEGAQLSFTEDALKAVAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 357 RAIARKT-----GARGLRSILEDILLDTMF 381


>gi|94266225|ref|ZP_01289933.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93453198|gb|EAT03659.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 600

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 11/117 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDE----- 50
           +  F+ +P E++S LD+Y++GQQ+AK  +A  +   + R      ++   D+  +     
Sbjct: 67  EFHFDLAPEELISHLDQYVVGQQEAKATLATKICTHFNRISRSLERRRVGDMNGDGGNVG 126

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +  N+LL+GPTGVGKT + + +AR  G PF+K + TKF+E GYVG +V+ +IRDLV
Sbjct: 127 RIKNNVLLIGPTGVGKTYLIKLIARHLGVPFVKGDATKFSETGYVGGDVDDLIRDLV 183



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 109/257 (42%), Gaps = 71/257 (27%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+D + RD ++  ++      +GIV+LDE DKI   +   G+ VSR GVQR LL  +E +
Sbjct: 174 DVDDLIRDLVREADHDLERARFGIVYLDEVDKIAGGEGRRGLDVSRSGVQRALLKPMEET 233

Query: 283 SVSTKYG----------------------SINTDHILFIASGAFH--------------- 305
            V  K                        ++NT HILFI SGAF+               
Sbjct: 234 EVEMKVPHDPISMIEAVEHYRQTGKRRRQTVNTRHILFIMSGAFNGLEETVRRRLQQRSI 293

Query: 306 ---------VSRPADLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTE 342
                      RP   L +I+              GR PV   L  L ++D   IL++  
Sbjct: 294 GFESTVAAAAGRPGAFLKKIKPEDLVDYGFESEFVGRLPVVAVLDELAEADLYHILSNPN 353

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           S++I+  K+  K  GI L F + ++  LA  A    +     GAR L +V+ER L     
Sbjct: 354 SSVIVSKKQDFKAYGIELYFEDVALRQLAVQAARERT-----GARALVSVVERALLHFER 408

Query: 403 SASDLQEKTVVIDAEYV 419
                + + +V+D++ V
Sbjct: 409 KLPSTEIRHLVVDSKLV 425


>gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
 gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           SP++I   LD Y+IGQ  AK+ +++A+ N ++R    Q+   D+  EL   NILL+GPTG
Sbjct: 65  SPKDICEVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKAGNDI--ELAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRNNDDRGVGEIFQELEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT++++ A+A 
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEETELDFTDEALSAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L +  F    ++  T VV++ E V
Sbjct: 359 RAIERKT-----GARGLRSILEDLLLETMFELPGMESVTKVVVNEEAV 401


>gi|281177609|dbj|BAI53939.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE15]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|332298210|ref|YP_004440132.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           brennaborense DSM 12168]
 gi|332181313|gb|AEE17001.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           brennaborense DSM 12168]
          Length = 415

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILL 58
           ++LT   +P+E    LD+Y+IGQ  AK+A+A+A+ N ++R  LP    D+  +   NILL
Sbjct: 54  IELTDVPTPKEFKEYLDQYVIGQDYAKKALAVAVYNHYKRMSLPKVENDDVRIEKSNILL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE ++  L++ A   V  + 
Sbjct: 114 IGPTGSGKTLLAKTLAQKLKVPFAIADATTLTEAGYVGEDVENVLLKLINAADGNVAAAE 173

Query: 119 R 119
           R
Sbjct: 174 R 174



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIFIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPNQEMIDI 234

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312
           +T +ILFI  GAF        +R AD                                 L
Sbjct: 235 DTTNILFICGGAFVGLDNIIETRVADHTMGFGTTFNALNEEDQAELLNKVIPDDLVKFGL 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PEI GR P+ V LK L K D +LILT+ ++ +I Q++     +   L+FT+++I+A+A+
Sbjct: 295 IPEIIGRMPISVALKELTKDDLKLILTEPKNAIIKQFRASFAIDNTELEFTDEAIEAIAE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            A+   +     GAR L++++E++L ++ F    ++  K +VI  + V
Sbjct: 355 TAIKRKT-----GARGLRSIVEKMLMNVMFEVPSIEGNKKLVITEDIV 397


>gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992114|gb|EEC58118.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
          Length = 422

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD Y+IGQ++AK+ +++A+ N ++R    A+  D EL   NIL++GPTG G
Sbjct: 67  LKPMEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMRKAEDDDVELQKSNILVIGPTGCG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 57/213 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 179 QYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTNASVPPQGGRKHPQQELI 238

Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADL--- 312
            I+T +ILF+  GAF                                  H   P DL   
Sbjct: 239 PIDTTNILFMCGGAFDGLEKIIEGRMNQKSIGFNAEIGDRSNEDIGELFHKVTPQDLVKF 298

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV V L SL++     ILT+ ++ L+ QYK+L + + + L+FT  +++A+
Sbjct: 299 GLIPEFVGRVPVVVALDSLDEKALVRILTEPKNALVKQYKKLFEMDEVDLEFTPQAVEAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           A  +    +     GAR L++++E V+ D  ++
Sbjct: 359 AKKSFERKT-----GARGLRSIIEEVMMDTMYT 386


>gi|213853069|ref|ZP_03382601.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 201

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178


>gi|77165152|ref|YP_343677.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|254433871|ref|ZP_05047379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           oceani AFC27]
 gi|123757859|sp|Q3JAJ9|CLPX_NITOC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|76883466|gb|ABA58147.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           oceani ATCC 19707]
 gi|207090204|gb|EDZ67475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           oceani AFC27]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+GPTG GK
Sbjct: 68  TPHEIRDILNQYVIGQNHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           NT +ILFI  GAF                                       P DL+   
Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+++    IL + ++ L  Q+  L + E   ++F ED++ A+A
Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILREPKNALTKQFARLFEMENCKVEFREDALRAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+ L +     GAR L++++E VL D  +    +     VVID   V+
Sbjct: 361 TKAMELKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405


>gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
 gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
          Length = 406

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 55/228 (24%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  
Sbjct: 170 QHGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPQGGRKHPEQKMI 229

Query: 290 SINTDHILFIASGAF---------HVSR-----------------------PAD-----L 312
           +I+T +ILF+  GAF          V+R                       P D     L
Sbjct: 230 AIDTKNILFVCGGAFDGIERIIASRVNRQTIGFGSQVTEKVDEDNFLKYITPTDVKSYGL 289

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GRFPV  +L+ L+    + I+T+ ++ +I QY  L + +GI L F  D +D + +
Sbjct: 290 IPELIGRFPVLTYLEPLDAKSLKRIITEPKNAIIKQYMRLFEIDGIRLKFDADVLDFIVE 349

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+        +GAR L+++ E +L D  +      E    +D EY +
Sbjct: 350 KAIEFK-----LGARGLRSICEAILTDAMYELPSKNETEFRVDLEYAK 392



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I   LD Y+IGQ DAK+ +++A+ N ++R         E+   N++LVG TG GK
Sbjct: 59  LKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEKSNVILVGRTGTGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 119 TLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAA 162


>gi|332653035|ref|ZP_08418780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ruminococcaceae bacterium D16]
 gi|332518181|gb|EGJ47784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ruminococcaceae bacterium D16]
          Length = 438

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 65/103 (63%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI + LD+YIIGQ+ AK A+++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 66  TPREIHAVLDQYIIGQEKAKVALSVAVYNHYKRIYFGGAEDVELQKSNILLMGPTGCGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             ++ LAR+   PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 126 LFAQTLARVLKVPFAIADATTLTEAGYVGDDVENILLRLVQAA 168



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 178 GIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313
           +T +ILFI  GAF                            +V       +P DLL    
Sbjct: 238 DTKNILFICGGAFDGIDKIIESRLDKRSLGFGAEIQSKKERNVGELMKEIQPQDLLKFGI 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR P+   L+SL++     ILT+ ++ L+ QY++LM+ + + L++T D+++A+AD
Sbjct: 298 IPELVGRMPIITTLESLDRDQMMQILTEPKNALVKQYQKLMEYDDVELEYTHDALEAVAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            AV        IGAR L+ ++E V+  + +   SD     V I+A  V+
Sbjct: 358 RAVERG-----IGARGLRAILEEVMTQVMYDVPSDPTIAKVTINAACVK 401


>gi|284044103|ref|YP_003394443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Conexibacter
           woesei DSM 14684]
 gi|283948324|gb|ADB51068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Conexibacter
           woesei DSM 14684]
          Length = 428

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 6/113 (5%)

Query: 4   TFNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57
           TF+ +    PR+I   L+ Y++GQ+ AKR +++A+ N ++R Q+     D  EL   NIL
Sbjct: 55  TFDLANLPKPRQIYDVLNEYVVGQEAAKRTLSVAVYNHYKRVQMMQSEDDDIELQKSNIL 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 115 LLGPTGCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++ +I
Sbjct: 177 GIIYIDEVDKIARKADNPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFLTI 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILF+  GAF                                      P DL     
Sbjct: 237 DTTNILFVCGGAFANLDKVIERRVGHQGVGFGATLQDKAARDLGNTFEECLPEDLVHYGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   +  L++++   ILT+  + L+ Q++   + +GI L F ++++ ++AD
Sbjct: 297 IPEFIGRLPVMSAVHQLSRNELMTILTEPRNALVKQFQRFFQFDGIELVFADEALQSVAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E VL ++ F
Sbjct: 357 KALERET-----GARGLRSIIEEVLLEVQF 381


>gi|27363511|ref|NP_759039.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio vulnificus
           CMCP6]
 gi|37679289|ref|NP_933898.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus
           YJ016]
 gi|320156968|ref|YP_004189347.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
 gi|31340018|sp|Q8DG27|CLPX_VIBVU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576400|sp|Q7MMG6|CLPX_VIBVY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27359627|gb|AAO08566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           vulnificus CMCP6]
 gi|37198032|dbj|BAC93869.1| ATP-dependent Clp protease, ATPase subunit [Vibrio vulnificus
           YJ016]
 gi|319932280|gb|ADV87144.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
          Length = 426

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPREIRAHLDDYVIGQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 97/226 (42%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL   ++ L  QY  L + EG  L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTASLTELDEEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    + +   VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVID 401


>gi|189347416|ref|YP_001943945.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           limicola DSM 245]
 gi|189341563|gb|ACD90966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           limicola DSM 245]
          Length = 437

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 61/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EGS   V  K G         
Sbjct: 196 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 253

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 254 NINTKNILFICGGAFEGLDKLIAKRVSKSSMGFGSRVKNKQTGYDPEILRFVTQDDLHEY 313

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++   R IL + ++ L+ QYK+L + +G+ L+FTE+++D +
Sbjct: 314 GLIPEFIGRLPVISTLDPLDEKALRNILVEPKNALVKQYKKLFEMDGVELEFTEEALDKV 373

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            D+A++  +     GAR L++V+E V+ DI F    L+
Sbjct: 374 VDIAIDRGT-----GARALRSVLENVMIDIMFELPSLK 406



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELM--PKNILLVGPTG 63
           SP+ I++ LD+Y++GQ  AK+++++A+ N ++R   Q  +   DE++    NILL+GPTG
Sbjct: 80  SPKAIMASLDQYVVGQDIAKKSLSVAVYNHYKRIDSQEWSHESDEVVIEKSNILLIGPTG 139

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 140 TGKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHAS 186


>gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
 gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
          Length = 428

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67
           P EI + LD+Y+IGQ+ AK+ +++A+ N ++R   P D  +  +PK N+LLVGPTG GKT
Sbjct: 75  PEEIKAFLDQYVIGQEQAKKVLSVAVYNHYQRISSPQDGDEVELPKSNVLLVGPTGCGKT 134

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 135 LLAQSLAKLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAA 177



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  K G          +
Sbjct: 187 GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLRILEGTLSNVPPKGGRKHPNQDFIQM 246

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                      +P DL+   
Sbjct: 247 DTRNILFICGGAFDGLEPIIARRTRRKVIGFGGELSSGQDAEERNALFRAIQPEDLMSYG 306

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L SL+++    IL + ++ L+ QY+++   EG+ L+FT +++ A+A
Sbjct: 307 FIPEFVGRLPVVVPLDSLDENALTRILREPKNALLRQYQKVFSLEGVELEFTLEAVRAVA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E  + ++ +
Sbjct: 367 RRALERKT-----GARALRSILESTMLELMY 392


>gi|237730415|ref|ZP_04560896.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|283834243|ref|ZP_06353984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
 gi|226905954|gb|EEH91872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|291069763|gb|EFE07872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
          Length = 424

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAQSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++DA+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFREEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|222085565|ref|YP_002544095.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 470

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 113 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 172

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 173 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 225



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 226 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 285

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 286 DTTNILFICGGAFAGLDKIISARGEKTSIGFGAAVKGPDDRRVGEVLRELEPEDLVKFGL 345

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+F ED++  +A 
Sbjct: 346 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 405

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 406 RAI-----VRKTGARGLRSIMEKILLDTMFDLPALEGVREVVISEEVVR 449


>gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 420

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I++ LD Y+IGQ  AKR +++A+ N ++R        D E+   NILLVGPTG GK
Sbjct: 64  TPADILAVLDGYVIGQSRAKRVLSVAVHNHYKRLANAGRTGDVEISKSNILLVGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 124 TLLAQTLARMLDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 237 DTTNILFICGGAFAGLDKLIAGRDTGAGIGFGADVRDPDDRKIGELLGSLEPEDLIKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QY++L + + + L+F +D++ A+A 
Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVRILTEPKNALVKQYEKLFEMDDVRLEFRDDALRAVAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A+   +     GAR L+++ME +L +  F   ++ D++E  VVI+ + V
Sbjct: 357 KAIARKT-----GARGLRSIMENILMEPMFDIPTSGDIEE--VVINGDVV 399


>gi|282898111|ref|ZP_06306106.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
 gi|281197255|gb|EFA72156.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
          Length = 252

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           PREI + LD ++IGQ +AK+ +++A+ N ++R    Q  A+   EL   NILL+GPTG G
Sbjct: 64  PREIKNYLDDHVIGQDEAKKVLSVAVYNHYKRLAVAQGKAEDSVELQKSNILLIGPTGCG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 124 KTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 177


>gi|225455378|ref|XP_002272792.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 583

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 19/127 (14%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-DLRD----- 49
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R      Q+ PA D  D     
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218

Query: 50  ------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
                 EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+
Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 278

Query: 104 RDLVDVA 110
             L+ VA
Sbjct: 279 YKLLMVA 285



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 295 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 354

Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311
           +T  ILFI  GAF                              P D              
Sbjct: 355 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESS 414

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +L ++    +LT+ ++ L  QYK++ +  G+ L FT++
Sbjct: 415 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 474

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  ++  A++ N+     GAR L++++E +L +  +   D++    +IDA
Sbjct: 475 ALRLISRKAMSKNT-----GARGLRSILENILMNAMYEIPDVRTGNDIIDA 520


>gi|15642920|ref|NP_227961.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           maritima MSB8]
 gi|8134367|sp|Q9WXZ3|CLPX_THEMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4980639|gb|AAD35239.1|AE001700_3 ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga
           maritima MSB8]
          Length = 406

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFIA GAF                                   HV+ P DL  
Sbjct: 228 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 286

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T++++  
Sbjct: 287 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 346

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +A  A+   +     GAR L+ V E ++ D+ F   +L+    V+  E V L
Sbjct: 347 IARKALKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 393


>gi|157146945|ref|YP_001454264.1| ATP-dependent protease ATP-binding subunit ClpX [Citrobacter koseri
           ATCC BAA-895]
 gi|166214770|sp|A8AK15|CLPX_CITK8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157084150|gb|ABV13828.1| hypothetical protein CKO_02722 [Citrobacter koseri ATCC BAA-895]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
 gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q   D+  EL   NILL+GPTG 
Sbjct: 65  TPKDICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIIAARGKGSAMGFGADVRDQDARGIGEIFTDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFEIEDTQLTFTDDALLAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L +  F    +   T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEDILLNTMFDLPGMDSVTEVVVNEEAV 400


>gi|26989025|ref|NP_744450.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           KT2440]
 gi|38257486|sp|Q88KI9|CLPX_PSEPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24983848|gb|AAN67914.1|AE016423_9 ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida KT2440]
          Length = 442

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 82  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 138 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 183



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 196 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 255

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 256 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 315

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D++ A+A
Sbjct: 316 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 375

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     ++   VVID
Sbjct: 376 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVID 415


>gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
 gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
          Length = 425

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63
           P+EI   L++YIIGQ+ AKRA+++++ N ++R Q       +D   E+   NILLVGPTG
Sbjct: 64  PKEIFDFLEQYIIGQESAKRALSVSVYNHYKRVQAGELGRGSDDHVEIAKSNILLVGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314
           +T ++LFI +GAF                                   RP DL     +P
Sbjct: 240 DTTNVLFIVAGAFSGLDDIIAARARKRVVGFGAPLLESHDEGDLFSEVRPEDLQKYGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++S    ILT+  + L+ QY+ + + +G+ L+F ++++ A+AD A
Sbjct: 300 EFIGRLPVVAAVSRLDQSALVRILTEPRNALVKQYQRMFQIDGVELEFEDEAVAAIADQA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  T    GAR L+ +ME VL+ + F
Sbjct: 360 L-LRGT----GARGLRAIMEEVLQQVMF 382


>gi|270291413|ref|ZP_06197635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
           acidilactici 7_4]
 gi|304385126|ref|ZP_07367472.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270280259|gb|EFA26095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
           acidilactici 7_4]
 gi|304329320|gb|EFL96540.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 5/108 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD---ELMPKNILLVGPT 62
           +P EIV  LD+Y+IGQ++AK+ +++A+ N ++R  +   AD +D   EL   NI L+GPT
Sbjct: 67  TPAEIVDYLDQYVIGQEEAKKTLSVAVYNHYKRINKMAQADAKDDGPELQKSNISLIGPT 126

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 GSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 174



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 56/210 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 183 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQ 242

Query: 291 INTDHILFIASGAF--------------------HVSR-------------PADLL---- 313
           INT +ILFI  GAF                    + S              P DLL    
Sbjct: 243 INTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTSLDESKSLMQQVIPEDLLKFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L + D   ILT+ ++ L+ QYK L+  +G+ L FT  ++ A+A+
Sbjct: 303 IPEFIGRLPILTALEKLTEEDLVRILTEPKNALVKQYKALLALDGVELKFTPQALHAIAE 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++ N+     GAR L++++E V+ DI F
Sbjct: 363 QAISRNT-----GARGLRSIIENVMRDIMF 387


>gi|325684388|gb|EGD26557.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 417

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A+        +GAR L+T++E  + DI +   S SD+ +  V+I  E +
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397


>gi|310820095|ref|YP_003952453.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393167|gb|ADO70626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 425

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y++GQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 68  PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 180 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 240 DTTNILFICGGAFGGLEQVIERRLGGRSLGFGADIQSKKQRNLTELLKHVE-PEDLLKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L+ L++     IL+  ++ L  QY++L + +G+ L FT+ ++ A++
Sbjct: 299 MIPEFIGRLPIITALEELDEPALVNILSQPKNALTKQYRKLFELDGVTLKFTDGALKAIS 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E  + D+ +
Sbjct: 359 TEAIRRKA-----GARGLRSILESAMLDVMY 384


>gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|13878442|sp|Q9CGE6|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64
           +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A     D EL   NILL+GPTG 
Sbjct: 61  TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +  NI R  R
Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235

Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314
           +T +ILFI  GAF               +   A+                       L+P
Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F ++++ A+A  A
Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E V+ DI F     +E T VI  E V
Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395


>gi|120610145|ref|YP_969823.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|326316314|ref|YP_004233986.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|166214750|sp|A1TM61|CLPX_ACIAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120588609|gb|ABM32049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|323373150|gb|ADX45419.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   +        EL   NILL+GPTG 
Sbjct: 67  TPSEIKANLDNYVIGQEIAKRTLAVAVYNHYKRLRHKDKAGKDEVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+      V  ++R
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQR 181



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADLL---- 313
           +T +ILFI  GAF             S                        P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVKSKKQRSLTEVFTEIEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L++++E+ L
Sbjct: 362 KALARKT-----GARGLRSILEQSL 381


>gi|300811984|ref|ZP_07092441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497045|gb|EFK32110.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 417

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A+        +GAR L+T++E  + DI +   S SD+ +  V+I  E +
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397


>gi|284054391|ref|ZP_06384601.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira
           platensis str. Paraca]
 gi|291569894|dbj|BAI92166.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira
           platensis NIES-39]
          Length = 445

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           PREI + LD ++IGQ DAK+ +++A+ N ++R       R      EL   NILL+GPTG
Sbjct: 85  PREIKAYLDHHVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNILLIGPTG 144

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 145 CGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G          I
Sbjct: 201 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF-----------------------HVS------------RPADL---- 312
           +T +ILF+  GAF                        V+             P DL    
Sbjct: 261 DTSNILFVCGGAFVGLEKIIEQRSGKKSMGFVRSGEEVTPEQKDTEALKGIEPNDLVKFG 320

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + + L+F  D+I A+A
Sbjct: 321 LIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDNVHLEFEPDAIQAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 REAFRRKT-----GARALRGIVEELMLDVMY 406


>gi|262277076|ref|ZP_06054869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
 gi|262224179|gb|EEY74638.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
          Length = 423

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 6/116 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI S L+ Y+IGQ+ AK+ +++A+ N ++R    ++   D+  EL   NILL+GPTG
Sbjct: 61  TPKEIFSILNEYVIGQKKAKQILSVAVHNHYKRLGHTEKSSNDV--ELAKSNILLIGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA++   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 119 CGKTLLAQTLAKILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 175 GIVYIDEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 235 DTTNILFIVGGAFAGIDKIISDRGQGSSIGFGAKIKDKIKKGVGELIKDVEPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L++     IL + +++L  QY +L + EG+ L F +D++ A+A 
Sbjct: 295 IPEFIGRLPIISTLEDLDEESLVQILEEPKNSLTKQYSKLFEIEGVKLTFAKDALKAIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+     V   GAR L++++E VL +  F
Sbjct: 355 KAI-----VRKTGARGLRSIIEEVLLETMF 379


>gi|220916470|ref|YP_002491774.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954324|gb|ACL64708.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 367

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
            +PREI + L R++IGQ+ AKRA+AIA  +  +R  +    R+  + K N+LLVGPTG G
Sbjct: 14  LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + +++R
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQR 127



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 52/223 (23%)

Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289
           GIVF+DE DKI  R   +  G G   +  EGVQ+ LL L+EG  V    G          
Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187

Query: 290 --SINTDHILFIASGAFH--VSRPAD----------------------------LLPEIQ 317
              ++T  ILF+ +G F    +   D                            +L E  
Sbjct: 188 TVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEYGMLAEFL 247

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ ++  L   A   
Sbjct: 248 GRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHELVAFARER 307

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            +     GAR L+ V+E VL ++ F A +     V++DA +VR
Sbjct: 308 GA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVR 345


>gi|170767649|ref|ZP_02902102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
 gi|170123137|gb|EDS92068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|73666835|ref|YP_302851.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str.
           Jake]
 gi|123773382|sp|Q3YSQ2|CLPX_EHRCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72393976|gb|AAZ68253.1| ClpX, ATPase regulatory subunit [Ehrlichia canis str. Jake]
          Length = 406

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 1/108 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T +  P+EI   LD Y+IGQ+ +K+ +++A+ N ++R      + + E+   N+LL+GPT
Sbjct: 56  TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAA 163



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 105/226 (46%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 173 GIIYIDEVDKISRKSENTSITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232

Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314
           NTD+ILFI  GAF                        VS+  D              L+P
Sbjct: 233 NTDNILFIFGGAFDGLDKIIESRHRGSSMGFEANVQKVSKNKDIFCYTEPEDLVKFGLIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  LN+S    IL + +++L+ QYK+L + + I L F + ++  +A  A
Sbjct: 293 EFVGRIPVITSLSELNESTLCRILVEPKNSLVKQYKKLFEMDNIDLQFDDSALSEIAKKA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419
                 V   GAR L+ ++E +L D+ F S  D+    VVI  + V
Sbjct: 353 -----AVRKTGARGLRAILEALLLDLMFESPGDVGINQVVISKKMV 393


>gi|329894938|ref|ZP_08270737.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC3088]
 gi|328922667|gb|EGG30002.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC3088]
          Length = 430

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQQ AK+ +++A+ N ++R +      D  EL   NILLVGPTG GK
Sbjct: 70  PKEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGQSSSDAVELGKSNILLVGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 130 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 58/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311
           +T +ILFI  GAF        +R A                                   
Sbjct: 243 DTSNILFICGGAFAGLDKVITNRSAKGGIGFNAEVKGKEQKKEFGEILFDLEPEDLVHYG 302

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L+      ILT+ ++ L  QYK L + EG+ +DF ED + A+A
Sbjct: 303 LIPEFVGRLPVIATLEELDVEALVQILTEPKNALTKQYKRLFEMEGVEVDFREDGLQAIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
             A+   +     GAR L++++E VL D  +S
Sbjct: 363 KKAMERKT-----GARGLRSILEAVLLDSMYS 389


>gi|262042474|ref|ZP_06015633.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040178|gb|EEW41290.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|302528950|ref|ZP_07281292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. AA4]
 gi|302437845|gb|EFL09661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. AA4]
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDE---LMPKNILLVG 60
           P +I   L++YIIGQ DAK+ +A+A+ N ++R Q      P D +DE   L   NIL++G
Sbjct: 64  PADIHEFLEQYIIGQDDAKKTLAVAVYNHYKRIQADDKSGPKDSKDEPVELAKSNILMLG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 PTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T ++LFI +GAF                                    + P DL+    
Sbjct: 243 DTTNVLFIVAGAFAGLEKIINERVGKRGLGFGAEIRTKAEIEGSDVFSETMPEDLIKFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L+K     ILT   + L+ QYK+L + + + L+FT+ +++A+AD
Sbjct: 303 IPEFIGRLPVVATVNHLDKESLVSILTQPRNALVKQYKKLFEMDNVELEFTKTALEAIAD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            AV L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 363 QAV-LRGT----GARGLRAIMEEVLQPVMYDIPSREDVAKVVITEQTVRENV 409


>gi|156836523|ref|XP_001642319.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112819|gb|EDO14461.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 496

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 206/482 (42%), Gaps = 132/482 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRW--------------RRQQLPADLRD----- 49
           PR++   LD YIIGQ+++K+ +++A+ N +              +RQ L   L++     
Sbjct: 29  PRDLKLFLDEYIIGQENSKKVLSVAVYNHYLRIHDRQRKLDLLKQRQTLEEQLKEKDSEI 88

Query: 50  -----------------------------------ELMPKNILLVGPTGVGKTAISRRLA 74
                                              EL   N+L+VGPTG GKT ++  LA
Sbjct: 89  GNGSNISGSQLNSEAMAGLKNLRRQLESFKEDEDLELSKSNVLVVGPTGSGKTLLATTLA 148

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
           R+   P    + T+ T+ GY+G +VE+ +  L+                    INA+  +
Sbjct: 149 RVLEVPIAISDCTQLTQAGYIGDDVEKCVERLL--------------------INADFDV 188

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLS 193
             A                    G I   EID ++A ++++I + D+ G G    +L L 
Sbjct: 189 AKA------------------EKGIIVLDEID-KLAKSTNNIMSKDVSGEGVQQSLLKLI 229

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE-- 251
           E            K+ +SV++       D+S++      + +D   +++   I+F+    
Sbjct: 230 E----------GHKVEISVKRPVKVDKDDKSNK----TAMKKDETFVIDTSNILFMIMGA 275

Query: 252 ---FDKIVARDSGNGIGVSR--EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG---- 302
               DK VA    N   +++  E  Q      +E     T+Y  I     + I+ G    
Sbjct: 276 FVGLDKHVANRIKNMKELTKVHEKDQPKEQEEIENKERETEYKGIEE---VEISEGKKVP 332

Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           A +++ PADL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G
Sbjct: 333 ALNLTTPADLVRFGIIPELVGRVPIITALQPLKEEDLYNILREPKNALLYQYEYIFKQFG 392

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L  TE ++  +A++++   +     GAR L+ +MER+L ++++     +   V+++ +
Sbjct: 393 VKLLVTEKALKKVAEISLKEGT-----GARGLRGIMERLLLNVNYECPGSEISYVLVNED 447

Query: 418 YV 419
            V
Sbjct: 448 TV 449


>gi|86140704|ref|ZP_01059263.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
 gi|85832646|gb|EAQ51095.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
          Length = 410

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT+HILF+A GAF      +S+                            P DL     +
Sbjct: 234 NTEHILFVAGGAFDGIERVISKRLNMQAVGFSASMSEDVIDRENLLKYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+    R ILT+ ++ +I QY++L + + I  + T  ++D + + 
Sbjct: 294 PEIIGRLPVLTHMDPLDAKTLRAILTEPKNAIIKQYEKLFEMDDIEFEITGPALDYIVNK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L+++ E +  D  F        +  +D EY    +
Sbjct: 354 AIEYK-----LGARGLRSLCEAIFTDAMFDLPSSDLNSFKVDKEYAEFKL 398



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD YIIGQ   K+ +A+A+ N ++R   P    D E+   NI++VG TG GKT
Sbjct: 62  PKEIKDFLDEYIIGQDYTKKVMAVAVYNHYKRLLQPETEDDIEIQKSNIVMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173


>gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
           lactis subsp. lactis CV56]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64
           +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A     D EL   NILL+GPTG 
Sbjct: 61  TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +  NI R  R
Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235

Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314
           +T +ILFI  GAF               +   A+                       L+P
Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F ++++ A+A  A
Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E V+ DI F     +E T VI  E V
Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395


>gi|227877365|ref|ZP_03995436.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
 gi|227863033|gb|EEJ70481.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
          Length = 429

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 72  PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 131

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 132 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 174



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 184 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 243

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 244 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 302

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + + L FT+ ++ A+AD
Sbjct: 303 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           +A+  N     +GAR L+T++E  + DI + + S+   +TV +  + +  H
Sbjct: 363 LAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 408


>gi|327439425|dbj|BAK15790.1| ATP-dependent protease Clp, ATPase subunit [Solibacillus silvestris
           StLB046]
          Length = 423

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI++ L  Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GKT
Sbjct: 64  PKEILNILGEYVIGQERAKKALAVAVYNHYKRINSNSKIDDVELSKSNIVLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTSNILFIVGGAFDGIETIIKRRQGEKVIGFASTQNKGIDEDASIMSQLIPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ LN      ILT+ ++ L  QY+++++ + + L+F +D++  +A +
Sbjct: 296 PEFIGRLPVLATLEQLNVDALVQILTEPKNALAKQYQKMLELDDVELEFEDDALVEIAKL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A+   +     GAR L++++E  + D+ F     ++ K  +I AE +R
Sbjct: 356 AIERKT-----GARGLRSIIEATMLDVMFELPSREDIKKCIITAETIR 398


>gi|312961788|ref|ZP_07776286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens WH6]
 gi|311284047|gb|EFQ62630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens WH6]
          Length = 438

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 133

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 134 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 252 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 311

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411


>gi|203284514|ref|YP_002222254.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly]
 gi|203288048|ref|YP_002223063.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1]
 gi|238690569|sp|B5RMG2|CLPX_BORDL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690576|sp|B5RPV8|CLPX_BORRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|201083957|gb|ACH93548.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly]
 gi|201085268|gb|ACH94842.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1]
          Length = 429

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R  +    +   EL   N+LLVGPTG G
Sbjct: 64  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFKGSKRETGVELEKSNVLLVGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++++LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTLLAKKLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 168



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G         +I
Sbjct: 178 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPRGGRKHPYEETIAI 237

Query: 292 NTDHILFIASGAF------------------HVSRPAD-------------------LLP 314
           NT  ILFI  GAF                    S   D                   L+P
Sbjct: 238 NTHDILFICGGAFVGLENIIKKRINRSFIGFSSSSCKDTGGDNSLKYLEMEDLIKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L  L K D   IL + E++++ QY  + K + + L F +D++DA+A+ A
Sbjct: 298 EFVGRLPVHSYLDKLEKKDLMKILVEPENSIVRQYYHMFKMDNVDLLFEKDALDAIAEEA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F   S  Q K V++  + V
Sbjct: 358 MLKNT-----GARGLRSILEELLKDVMFEIPSSKQIKKVIVTKDSV 398


>gi|300114125|ref|YP_003760700.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           watsonii C-113]
 gi|299540062|gb|ADJ28379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           watsonii C-113]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+GPTG GK
Sbjct: 68  TPHEIRDILNQYVIGQSHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           NT +ILFI  GAF                                       P DL+   
Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+++    IL + ++ L  Q+  L + E   ++F ED++ A+A
Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILREPKNALTKQFARLFEMENCKVEFREDALRAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+ L +     GAR L++++E VL D  +    +     VVID   V+
Sbjct: 361 TKAMELKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405


>gi|295692729|ref|YP_003601339.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           crispatus ST1]
 gi|295030835|emb|CBL50314.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           crispatus ST1]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + + L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
            A+  N     +GAR L+T++E  + DI + + S+   +TV +  + +  H
Sbjct: 355 SAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 400


>gi|315650623|ref|ZP_07903683.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487120|gb|EFU77442.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
          Length = 427

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ DAK+ +++A+ N ++R +   +   E+   NIL++GPTG GK
Sbjct: 63  LKPKEIKKFLDDYVIGQDDAKKVLSVAVYNHYKRIKSKRNAEVEIQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EGS  SV  + G          
Sbjct: 175 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGSIASVPPQGGRKHPQQELIQ 234

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                   +  P DL    
Sbjct: 235 IDTTNILFICGGAFDGLEKIVENRLSKGSIGFNSDVVEKNSKSIDELFKMVLPGDLTKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L  L+K     I+T  ++ +  QY++L + + + L+F + +++ +A
Sbjct: 295 LIPEFIGRVPVTVSLDMLDKEALMQIMTKPKNAITKQYQKLFELDDVKLEFDDKAVEEVA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++A+        IGAR L++++E V+ D+ +
Sbjct: 355 NLALERK-----IGARGLRSILEGVMTDMMY 380


>gi|313893233|ref|ZP_07826810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313442586|gb|EFR61001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 417

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPRDIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A  +I R  R
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V R              P DLL    
Sbjct: 235 DTTNILFICGGAFDGMDRVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     ILT  ++ L  QY++++  +G+ L FTED+++ +AD
Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A+   +     GAR L+ ++E+V++ + F    + E T  I
Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391


>gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [butyrate-producing bacterium SS3/4]
          Length = 433

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R   ++ +D+  +L   NIL++GPTG 
Sbjct: 65  LKPKEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRITSKMESDV--DLQKSNILMLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           GKT +++ LA+L G PF   + T  TE GYVG +VE I+  L+  A N
Sbjct: 123 GKTYLAQTLAKLLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADN 170



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 66/249 (26%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVE 280
           D++ +    IQ  +N      YGI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 156 DVENILLKLIQAADNDVSRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILE 215

Query: 281 GS--SVSTKYG---------SINTDHILFIASGAF------------------------- 304
           G+  SV  + G          I+T +ILFI  GAF                         
Sbjct: 216 GTVASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLERIIESRLETSSIGFGAKIVDK 275

Query: 305 ---------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                      + P DL     +PE  GR PV V L  L++     ILT+ ++ L+ QY+
Sbjct: 276 KNTDISKLLKQAMPQDLTKFGLIPEFVGRVPVMVSLDLLDEDSLVRILTEPKNALVKQYQ 335

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407
           +L + + + L+FT D++  +A +AV   +     GAR L+ +ME V+ D  +   S S++
Sbjct: 336 KLFELDDVKLEFTPDAVHEIAHMAVERKT-----GARGLRAIMESVMMDTMYEVPSDSNV 390

Query: 408 QEKTVVIDA 416
              TV  DA
Sbjct: 391 GICTVTKDA 399


>gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64
           +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A     D EL   NILL+GPTG 
Sbjct: 61  TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +  NI R  R
Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235

Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314
           +T +ILFI  GAF               +   A+                       L+P
Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F ++++ A+A  A
Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E V+ DI F     +E T VI  E V
Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395


>gi|256842924|ref|ZP_05548412.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256848701|ref|ZP_05554135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|262045891|ref|ZP_06018855.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|293381819|ref|ZP_06627791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|312978251|ref|ZP_07789994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
 gi|256614344|gb|EEU19545.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256714240|gb|EEU29227.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|260573850|gb|EEX30406.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|290921605|gb|EFD98635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|310894770|gb|EFQ43841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + + L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           +A+  N     +GAR L+T++E  + DI + + S+   +TV +  + +  H
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 400


>gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
 gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
          Length = 438

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R  + + +RD ++   NIL++GPTG G
Sbjct: 64  LKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKR--ITSKVRDIDVQKSNILMIGPTGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQI 235

Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312
           +T +ILFI  GAF    H+                               +P DL     
Sbjct: 236 DTTNILFICGGAFDGLEHIIEKRIASGSIGFGAEIVEKNKDNYDDVLKQVQPEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L S +    + ILT  ++ L+ QY++L + +G+ L F++D++ A+A+
Sbjct: 296 IPEFIGRVPVDVELSSHDVDSLKRILTTPKNALVKQYQKLFEMDGVGLSFSDDAVTAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+++ME ++ +I +
Sbjct: 356 KAVQRKT-----GARGLRSIMEGMMTEIMY 380


>gi|152968973|ref|YP_001334082.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893387|ref|YP_002918121.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330011534|ref|ZP_08307120.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
 gi|166214780|sp|A6T5I1|CLPX_KLEP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150953822|gb|ABR75852.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545703|dbj|BAH62054.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328534151|gb|EGF60786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|125624160|ref|YP_001032643.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|38257645|sp|Q8GJP6|CLPX_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7546983|gb|AAF63738.1|AF236863_2 protease ClpX [Lactococcus lactis subsp. cremoris MG1363]
 gi|24935310|gb|AAN64303.1| ClpX protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492968|emb|CAL97931.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300070936|gb|ADJ60336.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64
           +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A     D EL   NILL+GPTG 
Sbjct: 61  TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +  NI R  R
Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-----------------LLP 314
           +T +ILFI  GAF                    +  + +D                 L+P
Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F + ++ A+A  A
Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E V+ DI F     +E T VI  E V
Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAV 395


>gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 434

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 66/102 (64%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI   LD+Y+IGQ +AK+ +++A+ N ++R  +  D   EL   NIL++GPTG GKT 
Sbjct: 68  PKEIKEFLDQYVIGQDEAKKVLSVAVYNHYKRILMGGDSDVELQKSNILMLGPTGSGKTL 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 128 LAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 169



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAFH------VSR----------------------------PAD-----L 312
           +T +ILFI  GAF        SR                            P D     L
Sbjct: 239 DTSNILFICGGAFDGLEKIIESRIGKKSIGFGADVFGQKETDLGELLRQVLPEDFVKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L++     IL + +S L+ QY+ L + +G+ L F +D++ A+A 
Sbjct: 299 IPEFIGRVPVNVSLNPLDEGALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDALIAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
            A+   +     GAR L+ +ME V+ D+ +   S +D+ E  +  D
Sbjct: 359 KALERKT-----GARGLRAIMEGVIMDLMYEIPSQTDVSECLITKD 399


>gi|206579207|ref|YP_002240082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288936833|ref|YP_003440892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|290510111|ref|ZP_06549481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
 gi|238066657|sp|B5Y0U1|CLPX_KLEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206568265|gb|ACI10041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288891542|gb|ADC59860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|289776827|gb|EFD84825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    + + + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMDDVEKVVID 399


>gi|388977|emb|CAA80816.1| ATP-binding protein [Escherichia coli]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------HVS--------------------RPADLL-- 313
           +T  ILFI  GAF                H                       P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGHWCWRSGKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
 gi|238686732|sp|A7ILC7|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
          Length = 422

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T +ILFI  GAF                      V+ P D                   
Sbjct: 238 DTTNILFICGGAFAGLDKIISSRSKGSTSIGFQAKVAPPEDRRPGEVFREVEPEDLLKYG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++   + IL++ ++ L+ QY+ L + E + L   E+++ A+A
Sbjct: 298 LIPEFIGRLPVLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEALGAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 358 RKAIERKT-----GARGLRSIMESILLDTMFDLPGLEGVEEVVISREVV 401


>gi|213521160|gb|ACJ50517.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           fluorescens]
          Length = 438

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R     + RD      EL   NILL+GP
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 133

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 134 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 252 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 311

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYGKLFEMEGVDLEFRTDALKSVA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +      E   VVID
Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411


>gi|212638446|ref|YP_002314966.1| ATP-dependent protease ATP-binding subunit ClpX [Anoxybacillus
           flavithermus WK1]
 gi|226706575|sp|B7GH25|CLPX_ANOFW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|212559926|gb|ACJ32981.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Anoxybacillus flavithermus WK1]
          Length = 420

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ +AK+A+++A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PKEIRDILDEYVIGQDEAKKALSVAVYNHYKRINSNSKIDDVELAKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADLL-----P 314
           +T +ILFI  GAF      + R                           P DLL     P
Sbjct: 236 DTTNILFICGGAFDGLEPIIKRRLGKKVIGFSSDAQAEVEEKDLLSKVLPEDLLKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L++     IL   ++ L+ QY+++++ + + L+F E+++  +A  A
Sbjct: 296 EFVGRLPVITSLQPLDEDALVDILVKPKNALVKQYEKMLELDDVELEFEEEALREIAKRA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           +   +     GAR L++++E ++ D+ F   S  D+Q+   +I AE VR
Sbjct: 356 IERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITAETVR 397


>gi|323705912|ref|ZP_08117483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534710|gb|EGB24490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NIL++GPTG GKT
Sbjct: 63  PKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 175 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 235 DTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEIQSKQEKKIGEILKNIMPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L SL+K     ILT+ ++ L  QY++L + +G+ L+F + ++  +A 
Sbjct: 295 IPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415
            A++  +     GAR L++++E ++ D+ +   +SD  EK ++ +
Sbjct: 355 KAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITE 394


>gi|300856722|ref|YP_003781706.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436837|gb|ADK16604.1| ATP-dependent Clp protease, ATP-binding subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 429

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  
Sbjct: 174 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 233

Query: 291 INTDHILFIASGAFH-----VSR-----------------------------PADLL--- 313
           INT +ILFI  GAF      + R                             P DLL   
Sbjct: 234 INTTNILFICGGAFDGIDNIIERRTRVSTLGFGAEIQSKKEKDIGKLLKDIMPGDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L++L++S    IL + ++ LI QYK+L + + + L+F ED+++A++
Sbjct: 294 LIPEFVGRIPIIVTLEALDRSALVRILKEPKNALIKQYKKLFEFDDVELEFKEDALEAIS 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           D A+  N+     GAR L+ ++E  ++D+ F     +E   V+ID   V
Sbjct: 354 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVIIDKNAV 397



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ+DAK+++++A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 63  PVEIKNYLDQYVIGQEDAKKSLSVAVYNHYKRINSNNQNDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165


>gi|218549894|ref|YP_002383685.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ATCC 35469]
 gi|226706591|sp|B7LME1|CLPX_ESCF3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218357435|emb|CAQ90074.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia fergusonii ATCC 35469]
 gi|324114665|gb|EGC08633.1| ATP-dependent Clp protease [Escherichia fergusonii B253]
 gi|325498271|gb|EGC96130.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ECD227]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|229815147|ref|ZP_04445484.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM
           13280]
 gi|229809377|gb|EEP45142.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 11/114 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI   L +Y++GQ+DAKRA+++A+ N +RR  +   + D           EL   NI
Sbjct: 105 TPHEIYDALSQYVMGQEDAKRAMSVAVYNHYRRVLMGDTVEDSLGAHAVDEDVELAKSNI 164

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 165 LLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLITAA 218



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV    G          I
Sbjct: 228 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 287

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     ++ P                     +
Sbjct: 288 DTTNILFICGGAFVGLDKIISDRVGNQGIGFNSEIAGPTSKDENVLLRQVLPEDLNNFGM 347

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV    ++L++ D   ILT+ ++ ++ QY+ +   EG+ L F  D++  +A 
Sbjct: 348 IPEFIGRTPVITQTQALSEDDLVGILTEPKNAVVKQYRRMFSLEGVELVFEPDALHEIAR 407

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ E +L+   F
Sbjct: 408 KALARKT-----GARGLRSICEELLQQTMF 432


>gi|295096775|emb|CBK85865.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKATSEKPNEGQLLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|115374874|ref|ZP_01462147.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368092|gb|EAU67054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 400

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y++GQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 43  PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 102

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 103 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 154



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 155 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQV 214

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 215 DTTNILFICGGAFGGLEQVIERRLGGRSLGFGADIQSKKQRNLTELLKHVE-PEDLLKFG 273

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L+ L++     IL+  ++ L  QY++L + +G+ L FT+ ++ A++
Sbjct: 274 MIPEFIGRLPIITALEELDEPALVNILSQPKNALTKQYRKLFELDGVTLKFTDGALKAIS 333

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E  + D+ +
Sbjct: 334 TEAIRRKA-----GARGLRSILESAMLDVMY 359


>gi|260222836|emb|CBA32802.1| ATP-dependent Clp protease ATP-binding subunit clpX [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P +I + LD Y+IGQ+ AKR +A+A+ N ++R +     +    EL   NILL+GPTG 
Sbjct: 67  TPADIKANLDNYVIGQEPAKRTLAVAVYNHYKRLKHKEKAKKDDVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I+  L+
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLL 169



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIESRTESSGIGFGAAVKSKQQRALTEVFKEVEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG  L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVATLAELTEEALVQILTEPKNALVKQYAKLLAMEGTELEIRPAALKAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+     +   GAR L++++E+ L D  +
Sbjct: 362 RAL-----IRKTGARGLRSILEQSLIDTMY 386


>gi|148263973|ref|YP_001230679.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
 gi|189044135|sp|A5GFA1|CLPX_GEOUR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146397473|gb|ABQ26106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
          Length = 417

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +A+A+ N ++R +  A   + E+   NILL+GPTG GKT
Sbjct: 66  PQEIKEVLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 126 LLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILF+  GAF                     V +              P DLL    
Sbjct: 238 DTTNILFVCGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     IL + ++ L+ QY++L + E + L FT+ S+ A+A 
Sbjct: 298 IPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFEMEHVKLKFTDGSLVAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S +  K VVI  + +
Sbjct: 358 EALKRRT-----GARGLRSILENAMLDIMYEIPSQVMVKEVVISEDVI 400


>gi|304407482|ref|ZP_07389134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           curdlanolyticus YK9]
 gi|304343433|gb|EFM09275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           curdlanolyticus YK9]
          Length = 418

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD Y+IGQ+ AK+++A+A+ N ++R      L D EL   NILLVGPTG GKT
Sbjct: 64  PKDIRGILDSYVIGQESAKKSLAVAVYNHYKRINSQNKLEDVELQKSNILLVGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   +  P DLL    
Sbjct: 236 DTTNILFICGGAFDGLEQLIKRRIGKKVIGFNTAGDSQKELKPGEYLSMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL++ ++ L+ QY++L++ + + L+F   +++A+A 
Sbjct: 296 IPEFVGRLPVISSLEPLDEETLVRILSEPKNALVKQYQKLLEMDNVKLEFEAGALEAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLEVMY 380


>gi|91203982|emb|CAJ71635.1| strongly similar to ATPase subunit [Candidatus Kuenenia
           stuttgartiensis]
          Length = 420

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 12/148 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
            +P EI  +L+ YIIGQ+ AKR +A+A+ N ++R       +D   E+   NILL+GPTG
Sbjct: 63  LTPMEINDKLNEYIIGQEKAKRTLAVAVYNHYKRLLTSNRGKDDEVEIEKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++R LA+L   PF   + T  TE GYVG +VE I+       + ++R +  D  R
Sbjct: 123 SGKTLLARTLAKLLNVPFAIADATTLTEAGYVGEDVENIL-------LGLLRNADFDVKR 175

Query: 124 EQASINAEERILDALVGKTATSN-TREV 150
            Q  I   + I D +  K A+S+ TR+V
Sbjct: 176 AQQGIIYIDEI-DKIARKNASSSITRDV 202



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 61/220 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVST---------KYGSI 291
           GI+++DE DKI  +++ + I   VS EGVQ+ LL ++EG  S+V           KY  I
Sbjct: 179 GIIYIDEIDKIARKNASSSITRDVSGEGVQQALLKILEGVVSNVPPQGGRKHPEQKYIQI 238

Query: 292 NTDHILFIASGAF------------------------HVSRPAD---------------- 311
           +T +ILFI  G F                        H +   D                
Sbjct: 239 DTKNILFICGGTFSGVNEIIKRRIGKASIGFDTKKSTHETSDNDTSLGALLNKVEVEDLI 298

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++ E  GR PV V L  L + D   ++T+ ++ L+ QY++  + E   L+FT++++ 
Sbjct: 299 EYGMIVEFMGRLPVIVSLLPLTEQDMIKVMTEPKNALVKQYQKFFEMENAKLEFTDEALM 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A++ +A+       + GAR L++V E  + D  +   D +
Sbjct: 359 AISKIALK-----KETGARALRSVFESFMLDPMYHLPDCK 393


>gi|325294781|ref|YP_004281295.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065229|gb|ADY73236.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y++GQ++AK+ +++A+ N ++R     D  + EL   NILL+GPTG GK
Sbjct: 64  TPKEIKEFLDQYVVGQEEAKKVLSVAVYNHYKRIMSNEDTSEVELEKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 167



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQQYIQI 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  HV  P DL     
Sbjct: 237 DTSNILFICGGAFVGLEDIIAKRIGKGGMGFTADVKRNKLERSELLKHVE-PDDLVKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L + D   IL + ++ L+ QY++L++ EG+ L+FT+ ++  +A 
Sbjct: 296 IPELIGRLPVIATLNELTEEDLIRILKEPKNALVKQYRKLLELEGVELEFTDGALREIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L+ +ME+++ D+ F     ++ K V+IDAE V+
Sbjct: 356 EAIRRKT-----GARGLRAIMEKLMTDVMFEVPHRKDIKKVIIDAEAVK 399


>gi|323359782|ref|YP_004226178.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
 gi|323276153|dbj|BAJ76298.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
          Length = 422

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDE---LMPKNILLVG 60
           PREI S L+ Y++GQ+ AKRA+A+A+ N ++R +      PA+ R E   +   NILL+G
Sbjct: 66  PREIFSFLEEYVVGQEPAKRALAVAVYNHYKRVRSHGTLQPAEARAEEIDIAKSNILLLG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAA 175



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 58/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T ++LFI +GAF                                  + P DL     +P
Sbjct: 245 DTTNVLFIVAGAFAGLEEIISARVGKHGVGFGAPLQRKEDAPDLFSEALPEDLHKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT   + L+ QY+ + + +G+ L+F ED++ A+AD+A
Sbjct: 305 EFIGRLPVVASVSPLDQDALMEILTAPRNALVKQYQRMFELDGVQLEFDEDALRAIADLA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407
           V   +     GAR L+ ++E VL  I F   SA D+
Sbjct: 365 VARKT-----GARGLRAILEDVLGPIMFEVPSADDI 395


>gi|255011712|ref|ZP_05283838.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis 3_1_12]
 gi|313149547|ref|ZP_07811740.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           fragilis 3_1_12]
 gi|313138314|gb|EFR55674.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           fragilis 3_1_12]
          Length = 415

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239

Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313
           NT +ILFI  GAF             HV     SR               P DL     +
Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F  +  + + D 
Sbjct: 300 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVQLTFQPEVFEYIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D+ F      +K   +  +Y +
Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENQKEYEVTLDYAK 401



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ DAKR +A+++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 68  PVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 170


>gi|241764197|ref|ZP_04762231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
 gi|241366474|gb|EER60978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ  AKR +A+A+ N ++R   +  A   D EL   NILL+GPTG 
Sbjct: 67  TPVEIKANLDNYVIGQDQAKRTLAVAVYNHYKRLRHKDKAHKDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+      V  ++R
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQR 181



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADLL---- 313
           +T +ILFI  GAF             S                        P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGASVKSKKQRSLTEVFTEIEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L++++E+ L
Sbjct: 362 KALARKT-----GARGLRSILEQAL 381


>gi|296101560|ref|YP_003611706.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056019|gb|ADF60757.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSEKANEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+     +   GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|238060617|ref|ZP_04605326.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
           39149]
 gi|237882428|gb|EEP71256.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
           39149]
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           P EI   LD Y++GQ  AK+A+A+A+ N ++R Q      P    D  EL   NILL+GP
Sbjct: 64  PMEICQFLDNYVVGQDQAKKALAVAVYNHYKRIQAEAAGAPGSGSDAVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF-----------------------HVSR-----------PADLL---- 313
           +T ++LFI  GAF                        VS            P D+L    
Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRSVSERSTDDIFSQVMPEDMLKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F   +++A+AD
Sbjct: 302 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVKQYQRLFELDGVELEFDPPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386


>gi|225028672|ref|ZP_03717864.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
 gi|224953982|gb|EEG35191.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
          Length = 432

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 236

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PAD-----L 312
           +T +ILFI  GAF          + +                         P D     L
Sbjct: 237 DTTNILFICGGAFDGLEKIIENRIGKKSIGFQAEIMEQRKKDVGVLLKQVLPEDFVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L+K     ILT+ +S L+ QY++L + +G+ L FT+D+++A+A+
Sbjct: 297 IPEFIGRVPVNVSLNPLDKDALVKILTEPKSALVKQYQKLFEMDGVELKFTDDALEAIAE 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVV 413
            A+  N+     GAR L+++ME V+ D+ ++  + DL E   +
Sbjct: 357 KAIARNT-----GARGLRSIMESVVMDLMYTIPSDDLVESCTI 394



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+E+ + LD Y+IGQ +AK+ +++A+ N ++R         EL   NI+++GPTG GK
Sbjct: 64  MKPKEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRILAGGSYDVELQKSNIIMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARQLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167


>gi|88800032|ref|ZP_01115602.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
 gi|88777158|gb|EAR08363.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
          Length = 392

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y+IGQ  AK  +++A+ N ++R Q      D EL   NILL+GPTG GKT
Sbjct: 34  PSEIRSTLDEYVIGQDRAKMVLSVAVYNHYKRLQYGEANSDVELSKSNILLIGPTGSGKT 93

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  +ARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 94  LLAETMARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 133



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 146 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 205

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312
           +T +ILFI  GAF                     V +              P DL     
Sbjct: 206 DTANILFICGGAFAGLEKVIQNRTDKGGIGFNAEVKKKDDRKLGSVIANVEPEDLVKYGL 265

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L+++    ILT  +++L+ QY++L + E + LD  E ++ A+A+
Sbjct: 266 IPEFIGRLPVVATLTELDEAALVQILTTPKNSLVKQYQKLFEMESVELDIRESALKAVAN 325

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L++++E VL D  +
Sbjct: 326 KAMERNT-----GARGLRSILENVLLDTMY 350


>gi|238919012|ref|YP_002932526.1| ATP-dependent protease ATP-binding subunit ClpX [Edwardsiella
           ictaluri 93-146]
 gi|238868581|gb|ACR68292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX, putative
           [Edwardsiella ictaluri 93-146]
          Length = 435

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A    EL   NILL+GPTG GK
Sbjct: 78  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDASNGVELGKSNILLIGPTGSGK 137

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 138 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 190



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 191 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 250

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 251 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 310

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 311 GLIPEFIGRLPVVATLKELDEAALIQILQEPKNALTKQYQALFGLEGVDLEFRDEALTAI 370

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L D  +    ++  EK VV
Sbjct: 371 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVV 410


>gi|296121985|ref|YP_003629763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
 gi|296014325|gb|ADG67564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
          Length = 427

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ   KR +++A+ N ++R    AD  +  E+   NILL+GPTG G
Sbjct: 76  TPREITTHLDEYVIGQDRTKRLLSVAVYNHYKRLTAAADADNDIEIEKSNILLIGPTGSG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LARL   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 136 KTLLAKTLARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 180



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 190 GIVFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQI 249

Query: 292 NTDHILFIASGAF-------------------------HVSRPADLL------------- 313
           +T +ILFI  G F                           +R   LL             
Sbjct: 250 DTSNILFICGGTFVGLEDIIAKRLGKKTIGFGGSSVDDQKTRSGKLLAHACTDDVIEFGM 309

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++ D   IL++ +++L+ QY++  + E   L+ T +++  +A 
Sbjct: 310 IPELVGRLPVVSALSPLDEQDLVRILSEPKNSLVKQYQKFFQMENAELEVTSEALLEIAR 369

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A        D GAR L++V+E  + ++ +   D++  K  V+  E VR
Sbjct: 370 IA-----KAKDTGARGLRSVVEESMFEVMYELPDMEAGKKYVLTPEVVR 413


>gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
 gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
          Length = 428

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR I   LD Y+IGQ+ AK+ +A+A+ N ++R +     +D  EL   NILL+GPTG G
Sbjct: 69  TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 170



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 59/207 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNEATIGDLFKQIEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L   EG  L+F ED++ A+
Sbjct: 303 GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVL 397
           A  A++  +     GAR L++++E VL
Sbjct: 363 AKKAMDRKT-----GARGLRSILEAVL 384


>gi|145298872|ref|YP_001141713.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|226706574|sp|A4SM43|CLPX_AERS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|142851644|gb|ABO89965.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSSEAGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGADVKSKNARATLSENFAKVEPEDLIKY 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L+F +D+++A+
Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    L+    VVID   ++
Sbjct: 359 AHKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404


>gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 415

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 62  LKPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELHKSNILMLGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 122 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 165



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 174 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPHQELIQ 233

Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312
           I+T +ILFI  GAF                             + R      P DL    
Sbjct: 234 IDTTNILFICGGAFEGIDKIIETRIDKKSIGFNAEIAEKHEYDIDRLLGQVLPQDLVKFG 293

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F ++++  +A
Sbjct: 294 LIPELVGRVPVTVSLEMLDEEALIRILTEPKSAIVKQYQKLLELDGVELVFDKEALVEIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             ++   +     GAR L+ +ME+++ D  +
Sbjct: 354 KTSLARKT-----GARGLRAIMEKIMMDTMY 379


>gi|299783051|gb|ADJ41049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum CECT 5716]
          Length = 290

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 60/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 52  GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 111

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 112 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSKEINDVTEKNILQHVI-PEDLLKFG 170

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+++D   ILT+ ++ L+ QY+EL++ +G  L FT  ++ A+A
Sbjct: 171 LIPEFIGRLPVMTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMA 230

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
            +A++ N+     GAR L++++E V+ DI F     Q+   VVI+ E V  H
Sbjct: 231 KMAIDRNT-----GARGLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKH 277



 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 1   MAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 42


>gi|325125526|gb|ADY84856.1| ATP-dependent protease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 417

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A+        +GAR L+T++E  + DI +   S SD+ +  V+I  E +
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397


>gi|259416323|ref|ZP_05740243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
 gi|259347762|gb|EEW59539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
          Length = 395

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P++I   LD Y+IGQ  AKR +++A+ N ++R    Q+   D+  EL   NILL+GPTG
Sbjct: 65  TPKDICDVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 52/171 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T +ILFI  GAF  + R                                 P DLL    
Sbjct: 239 DTTNILFICGGAFAGLDRIIKQRGKGSAMGFGADVRDESDAGVGETFKDLEPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT
Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFT 349


>gi|304316360|ref|YP_003851505.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777862|gb|ADL68421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 424

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NIL++GPTG GKT
Sbjct: 63  PKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 175 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 235 DTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEVQSKQEKKIGEILKNIMPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L SL+K     ILT+ ++ L  QY++L + +G+ L+F + ++  +A 
Sbjct: 295 IPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415
            A++  +     GAR L++++E ++ D+ +   +SD  EK ++ +
Sbjct: 355 KAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITE 394


>gi|167754485|ref|ZP_02426612.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
 gi|167659110|gb|EDS03240.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
          Length = 429

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
             P EI   LD+Y+IGQ DAKR +++A+ N ++R    +    E  L   NILLVGPTG 
Sbjct: 79  LKPNEIKEFLDQYVIGQDDAKRYMSVAVYNHYKRLLHASGEASEVELDKSNILLVGPTGT 138

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA
Sbjct: 139 GKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVESILSRLLQVA 184



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GIVF+DE DKI AR S N      VS EGVQ+ LL ++EG+ V+            ++  
Sbjct: 194 GIVFIDEIDKI-ARKSDNPSLTRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQQFVQ 252

Query: 291 INTDHILFIASGAF------------------------HVSR--------PADL-----L 313
           ++T +ILFI  GAF                         V R        P DL     +
Sbjct: 253 VDTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRMNADSVDRNNLMQYLMPQDLRSFGLI 312

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +++ L +   R ILT  ++ +I QY++L + +G+ L F ++ +D + D 
Sbjct: 313 PELVGRLPVLTYMEPLGREALRSILTQPKNAIIKQYEKLFEMDGVKLVFDDEVLDYIVDK 372

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L+++ E ++ D  F      E+   +   Y R
Sbjct: 373 AIEYR-----LGARGLRSICEAIMMDTMFDIPSSGERRFEVTLPYAR 414


>gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|166214809|sp|Q1MIM6|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 425

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R      +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGASVKSQDDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L+F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|225850860|ref|YP_002731094.1| ATP-dependent protease ATP-binding subunit ClpX [Persephonella
           marina EX-H1]
 gi|225645554|gb|ACO03740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Persephonella
           marina EX-H1]
          Length = 411

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI  +LD Y+IGQ+ AK+ +++A+ N ++R   P    D   EL   NILL+GPTG 
Sbjct: 60  TPAEIKKKLDEYVIGQERAKKILSVAVYNHYKRIFHPGRYTDDDVELEKSNILLIGPTGS 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LA++   PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 120 GKTLLARTLAKILNVPFAIADATNITEAGYVGEDVESILVRLVQAA 165



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GI+++DE DKI A+ SG    ++R    EGVQ+ LL ++EG+  +            ++ 
Sbjct: 175 GIIYIDEIDKI-AKKSGENPSITRDVSGEGVQQALLKILEGTVANIPPQGGRKHPHQEFI 233

Query: 290 SINTDHILFIASGAF---------HVSRPA-----------------------------D 311
            ++T +ILFI  GAF          + + +                              
Sbjct: 234 QLDTSNILFILGGAFVGLEDIIKQRIGKKSIGFATQIRSKEEEEGNILSKVRVEDLIKFG 293

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     +LT+ ++ LI QYK+L+  +G+ L+FT+D+I A+A
Sbjct: 294 LIPEFIGRIPVVATLDELDEDALVRVLTEPKNALIKQYKKLLSMDGVELEFTDDAIRAIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A++  +     GAR L+ ++E ++ D+ +     Q  K VVID + V
Sbjct: 354 KEAIDRKT-----GARGLRAIVEEIMLDVMYEIPQAQGVKKVVIDKDVV 397


>gi|261341039|ref|ZP_05968897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316904|gb|EFC55842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKSTSEKPNEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+     +   GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|116062107|dbj|BAF34686.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Aeromonas veronii]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRTGSESGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQELSQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DLL  
Sbjct: 239 DTSKILFICGGAFAGLDKVLEQRSVKGTGIGFGAEVKSKSAKATLSESFAKVEPEDLLKY 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L F +D+++A+
Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELQFRDDALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    L     VVID   ++
Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404


>gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Vibrio fischeri ES114]
          Length = 428

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR I   LD Y+IGQ+ AK+ +A+A+ N ++R +     +D  EL   NILL+GPTG G
Sbjct: 69  TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 170



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 59/207 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKENEATIGDLFKQIEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L   EG  L+F ED++ A+
Sbjct: 303 GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVL 397
           A  A++  +     GAR L++++E VL
Sbjct: 363 AKKAMDRKT-----GARGLRSILEAVL 384


>gi|116513869|ref|YP_812775.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093184|gb|ABJ58337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 417

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 56/211 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           A+        +GAR L+T++E  + DI + A
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRA 381


>gi|315924139|ref|ZP_07920365.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622541|gb|EFV02496.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 431

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ +AK+A+++A+ N ++R        D  E+   NILL+GPTG G
Sbjct: 64  TPKEIKAALDTYVIGQDEAKKALSVAVYNHYKRINAAETDDDDVEIQKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAA 168



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 178 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQL 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T  ILFI  GAF                         V +          P D+L    
Sbjct: 238 DTKDILFICGGAFDGIEEVIAKRLEKGSIGFDATIRSRVEKEDDAMMEKIVPHDILKYGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   LK L++     ILT+ ++ L+ Q+++L++ E + L F  +++  +A 
Sbjct: 298 IPEFIGRIPVIATLKHLDEEALINILTEPKNALVKQFQKLLRLEDVDLTFEPEALSEIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
            A+   +     GAR L+ ++ERV+ D+ +   S SD+   T+  D
Sbjct: 358 KAMATKT-----GARGLRGIIERVMMDLMYEVPSESDISHITITKD 398


>gi|213419495|ref|ZP_03352561.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 265

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 239 DTSKILFICGGAF 251


>gi|104773862|ref|YP_618842.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422943|emb|CAI97605.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 417

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A+        +GAR L+T++E  + DI +   S SD+ +  ++I  E +
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--IIITPETI 397


>gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 437

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+ I S LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 79  SPQHIHSVLDDYVIGQAYAKRVLSVAVHNHFKRLNHAQKNSDVELAKSNILLVGPTGSGK 138

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 139 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQR 191



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 251

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 252 DTTNILFIVGGAFAGLDKVIQSRGDGASIGFNAEVKELEDRRIGDVLREVEPEDLLKFGL 311

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + L F  +++ A+A 
Sbjct: 312 IPEFIGRLPVIATLEDLDEEALVQILTSPKNALVKQYQRLFEMEDVKLTFKPEALVAVAK 371

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VVI+AE V
Sbjct: 372 KAITRKT-----GARGLRSIMEGILLDTMFDLPTLENVEEVVINAEVV 414


>gi|253999169|ref|YP_003051232.1| ATP-dependent protease ATP-binding subunit ClpX [Methylovorus sp.
           SIP3-4]
 gi|253985848|gb|ACT50705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. SIP3-4]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R  Q    D  + E+   NIL++GPTG 
Sbjct: 64  TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 166



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 238

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313
           +T +ILFI  GAF                                 V R   P DL+   
Sbjct: 239 DTTNILFICGGAFDGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F E ++  ++
Sbjct: 299 LIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFRESALRLIS 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
             A+   +     GAR L+++ME  L +I F    +   T VV+D   VR
Sbjct: 359 KKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403


>gi|269138348|ref|YP_003295048.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|267984008|gb|ACY83837.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|304558380|gb|ADM41044.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Edwardsiella
           tarda FL6-60]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L D  +    ++  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVV 398


>gi|237712736|ref|ZP_04543217.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1]
 gi|262408127|ref|ZP_06084674.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_22]
 gi|294645125|ref|ZP_06722850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CC 2a]
 gi|294809723|ref|ZP_06768410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447213|gb|EEO53004.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1]
 gi|262353679|gb|EEZ02772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_22]
 gi|292639549|gb|EFF57842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CC 2a]
 gi|294443057|gb|EFG11837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 414

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y ++ +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVTLDYAKMQL 403



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178


>gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|238066658|sp|B5ZY09|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 425

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R      +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A 
Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 432

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PREI + LD+Y++GQQ AK+A+++A+ N ++R Q     R          EL   NILL+
Sbjct: 66  PREIDAFLDQYVVGQQGAKQALSVAVYNHYKRIQPETTGRGRHATKEEPVELGKSNILLI 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 GPTGCGKTHLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAA 176



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 60/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GI+++DE DK V+R S N      VS EGVQ+ LL ++EG++VS            ++  
Sbjct: 186 GILYIDEVDK-VSRKSDNPSTTRDVSGEGVQQALLKILEGTTVSVPPQGGRKHPHQEFIQ 244

Query: 291 INTDHILFIASGAFHV----------------------------------SRPADL---- 312
           I+T ++LF+  GAF                                    +RP DL    
Sbjct: 245 IDTTNVLFVLGGAFAGLEKIVEQRTGRSGIGFGAEVRSRQQRQSEAALTDARPDDLVKFG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L+ L++     ILT+  + L+ QY++L + + + L FT+D+++A+A
Sbjct: 305 LIPELVGRLPVISTLQPLDRETLVRILTEPRNALVKQYQKLFRMDDVELRFTDDAVEAIA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           + A+ L  T    GAR  + ++E VL D+ +      + T VV+D  +V  H+
Sbjct: 365 EQAM-LRGT----GARATRAILEEVLLDLMYEVPSRDDVTEVVVDRGFVLDHV 412


>gi|323489955|ref|ZP_08095176.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
 gi|323396251|gb|EGA89076.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI+L+GPTG GKT
Sbjct: 64  PKEILDILNGYVIGQEKAKKSLAVAVYNHYKRVNSNSKIDDVELSKSNIVLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T ++LFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNVLFIVGGAFDGVDQIIKRRLGNKIIGFGADPNKEEIDEKSLLSQLIPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT+ ++ LI QY+++M+ +G+ L F  +++ A+A +
Sbjct: 296 PEFIGRLPVLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFDPEALVAIARL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E  + ++ F
Sbjct: 356 AIERKT-----GARGLRSIIENTMLEVMF 379


>gi|295399414|ref|ZP_06809396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110027|ref|YP_003988343.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. Y4.1MC1]
 gi|294978880|gb|EFG54476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215128|gb|ADP73732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y4.1MC1]
          Length = 420

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 61/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGADVQQSEVDEKNLLSKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +G+ L+F ED++  +A  
Sbjct: 296 PEFIGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEDALREIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A+   +     GAR L++++E ++ D+ F   S  D+Q+   +I  E VR
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITVETVR 398


>gi|332981497|ref|YP_004462938.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
           australiensis 50-1 BON]
 gi|332699175|gb|AEE96116.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
           australiensis 50-1 BON]
          Length = 428

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 5/114 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI + LD+Y++GQ+DAK+ +++A+ N ++R  + +D++    EL   NI+++GPTG G
Sbjct: 63  PAEIKAILDQYVVGQEDAKKTLSVAVYNHYKR--INSDVKSDGVELQKSNIIMLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 121 KTLLAQTLARILNVPFAMADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 174



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFDGIDKIIQNRLGEKAMGFGAEIKTKKEQDVGELLKHI-MPQDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR P+ V L +L+K     ILT+ ++ LI QY++L + +G+ L+F E +I A+A
Sbjct: 294 LIPEMVGRLPIIVTLHALDKKALMTILTEPKNALIKQYQKLFEMDGVTLEFEEAAIAAVA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           D A+  N+     GAR L+ ++E ++ +I +   S  D+ EK V+ +
Sbjct: 354 DKALERNT-----GARGLRAILEDIMLNIMYEIPSREDI-EKCVITE 394


>gi|317047176|ref|YP_004114824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
 gi|316948793|gb|ADU68268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S+                               P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    +++ + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEDVEKVVID 399


>gi|313201271|ref|YP_004039929.1| ATP-dependent clp protease, ATP-binding subunit clpx [Methylovorus
           sp. MP688]
 gi|312440587|gb|ADQ84693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. MP688]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R  Q    D  + E+   NIL++GPTG 
Sbjct: 64  TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 166



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 238

Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313
           +T +ILFI  GAF                                 V R   P DL+   
Sbjct: 239 DTTNILFICGGAFDGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVEPEDLIKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F E ++  ++
Sbjct: 299 LIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFRESALRLIS 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
             A+   +     GAR L+++ME  L +I F    +   T VV+D   VR
Sbjct: 359 KKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403


>gi|311280665|ref|YP_003942896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
 gi|308749860|gb|ADO49612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSEKANEGELLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|304413825|ref|ZP_07395242.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
 gi|304283545|gb|EFL91940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+A+A+A+ N ++R     D  +  EL   NILL+GPTG G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKALAVAVYNHYKRL-CNGDSNNGVELGKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYNVEKAQR 178



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-------------------------VSRPAD--------------- 311
           +T  ILFI  GAF                            +P++               
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRLNTGTGIGFGAIVKSVCEKPSEGELLRQAEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  LN+     IL + ++ L  QY+ L   E + L+FTE+++ A+
Sbjct: 299 GLIPEFIGRLPVVTTLTELNQEALIKILKEPKNALTKQYQALFNLESVELEFTEEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++   VV+D
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEKVDKVVVD 399


>gi|116491694|ref|YP_811238.1| ATP-dependent protease ATP-binding subunit [Oenococcus oeni PSU-1]
 gi|116092419|gb|ABJ57573.1| ATP-dependent protease Clp, ATPase subunit [Oenococcus oeni PSU-1]
          Length = 421

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R  + L      EL   NILL+GPTG G
Sbjct: 66  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  +         Y  +
Sbjct: 180 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 239

Query: 292 NTDHILFIASGAF---------------------------------HVSRPAD------- 311
           +T +ILFI  GAF                                  +++  D       
Sbjct: 240 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQFTDQDVIKFG 299

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ LDF   ++  +A
Sbjct: 300 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLDFDPKALKEMA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A++  S     GAR L+++ME  +++  +
Sbjct: 360 KIAIDKKS-----GARGLRSIMESTMKETMY 385


>gi|294501428|ref|YP_003565128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium QM B1551]
 gi|295706776|ref|YP_003599851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           megaterium DSM 319]
 gi|294351365|gb|ADE71694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium QM B1551]
 gi|294804435|gb|ADF41501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium DSM 319]
          Length = 421

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ+DAK+++++A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PKEIRDILDEYVIGQEDAKKSLSVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGSETKQQDFTEKELLAKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     ILT  ++ L+ QY+++++ + + L+F ++++  ++  
Sbjct: 296 PEFIGRLPVTASLVPLDEEALVEILTKPKNALVKQYQKMLELDDVELEFEDEALVEISKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           A+   +     GAR L++++E ++ D+ F      + T  +I  E VR
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDITKCIITGETVR 398


>gi|294635325|ref|ZP_06713822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
 gi|291091301|gb|EFE23862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E  L D  +    ++  + VV+D + +
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVVDEQVI 403


>gi|239827924|ref|YP_002950548.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp.
           WCH70]
 gi|259491261|sp|C5D5L4|CLPX_GEOSW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239808217|gb|ACS25282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. WCH70]
          Length = 421

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 61/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGLEPIIKRRLGKKVIGFGADIQQSDVDEKNLLSKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +G+ L+F E+++  +A  
Sbjct: 296 PEFVGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEEALREIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A+   +     GAR L++++E ++ D+ F   S  D+Q+   +I  E VR
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITVETVR 398


>gi|290891315|ref|ZP_06554376.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
 gi|290478961|gb|EFD87624.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
          Length = 421

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R  + L      EL   NILL+GPTG G
Sbjct: 66  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  +         Y  +
Sbjct: 180 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 239

Query: 292 NTDHILFIASGAFH---------------------------------VSRPAD------- 311
           +T +ILFI  GAF                                  +++  D       
Sbjct: 240 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFDKKNPLTQFTDQDVIKFG 299

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ LDF   ++  +A
Sbjct: 300 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLDFDPKALKEMA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A++  S     GAR L+++ME  +++  +
Sbjct: 360 KIAIDKKS-----GARGLRSIMESTMKETMY 385


>gi|77919286|ref|YP_357101.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter
           carbinolicus DSM 2380]
 gi|123574093|sp|Q3A3X6|CLPX_PELCD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77545369|gb|ABA88931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter
           carbinolicus DSM 2380]
          Length = 416

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+ +++A+ N ++R ++  D  D E+   NIL++GPTG GKT
Sbjct: 66  PSEIKDALDEYVIGQEKAKKILSVAVYNHYKRVEMVQDGDDIEIQKSNILMLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 126 LLAQTLAKLLNVPFAIADATNLTEAGYVGEDVENIILSLLQAA 168



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  +
Sbjct: 178 GIIYIDEVDKIARKSDSPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313
           +T +ILFI  GAF                                    + P DL+    
Sbjct: 238 DTTNILFICGGAFSGLESVIKQRSGTKALGFGAEIKEKKEEGVGEILARTEPMDLIRFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL + ++ L+ QY++L + E + L FT+ ++ A+A 
Sbjct: 298 IPEFVGRLPVVATLEELDEESLVRILKEPKNALVKQYQKLFEMEKVHLKFTDGALVAVAA 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E  + D+ +   S  + K VVI+ + +R
Sbjct: 358 EALKRKT-----GARGLRSIIENAMLDVMYDIPSQDRVKEVVINEDVIR 401


>gi|332524023|ref|ZP_08400275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315287|gb|EGJ28272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 409

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P+E++  L++Y++GQ  AKRA+++A+ N ++R    A+ RD    EL   NIL++GPTG 
Sbjct: 64  PKELLETLNQYVVGQDRAKRALSVAVYNHYKRVSF-AESRDDEEVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISEDIQTFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+ SD   ILT+ ++ L+ QY+ L+  +G+ L F ++++DA+A+ A
Sbjct: 298 EFIGRLPVVAALEQLSTSDLVKILTEPKNALVKQYQTLLSYDGVELTFDQEALDAIAEKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IARKT-----GARGLRSIIEETMLDLMF 380


>gi|224369886|ref|YP_002604050.1| ClpX2 [Desulfobacterium autotrophicum HRM2]
 gi|223692603|gb|ACN15886.1| ClpX2 [Desulfobacterium autotrophicum HRM2]
          Length = 580

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 6/114 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDEL-----MPKNI 56
           + FN  P+E+++ LD+YI+ Q+ AK  +A  +   + R + L      ++     +  NI
Sbjct: 57  VNFNIKPQELIAYLDQYIVKQKRAKSVLATKICTHFNRVKHLETTKHSDVRITGSIKSNI 116

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L++GPTGVGKT I + +A+  G PF+K + TKF+E GYVG +V+ ++RDLV  A
Sbjct: 117 LMLGPTGVGKTYIVKLIAKRIGVPFVKADATKFSETGYVGGDVDDLVRDLVKEA 170



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 65/221 (29%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS----- 290
           D I++ E  GI++LDE DKI A  +  G  +SR GVQR LL  +E + V  K        
Sbjct: 172 DDIELAE-CGIIYLDEIDKIAASSNLRGADISRTGVQRALLKPMEETDVDLKVPHDPVSM 230

Query: 291 -----------------INTDHILFIASGAFH-----VSR------------------PA 310
                            +NT +ILFI SGAF      VSR                   +
Sbjct: 231 MQELESFQRTGKRSERRVNTSNILFIMSGAFSDLNEIVSRRVTHHAMGFGSSLAKAKTNS 290

Query: 311 DLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           D+L ++               GR PVR  L +L+K D   ILT   + +IL  +      
Sbjct: 291 DILKQVTAEDLVEFGFESEFIGRLPVRCVLDTLSKDDLFTILTMPNNPVILGKRLDFAAY 350

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           GI + FT +++D LA  A   N+     GAR L +V+E  L
Sbjct: 351 GIDIVFTPEALDILAQRAFEENT-----GARGLVSVVENAL 386


>gi|119356466|ref|YP_911110.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides DSM 266]
 gi|166214769|sp|A1BE59|CLPX_CHLPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119353815|gb|ABL64686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides DSM 266]
          Length = 436

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EGS   V  K G         
Sbjct: 195 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 252

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 253 NINTRNILFICGGAFEGLDKLIARRVSKSSMGFGSKVKNKHTGYDPEILRFVTQDDLHEY 312

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+++  R IL + ++ +I QYK+L + +G+ L+FT++++D +
Sbjct: 313 GLIPEFIGRLPVISTLDPLDETALRSILVEPKNAIIKQYKKLFEMDGVELEFTDEALDKV 372

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            D+A++  +     GAR L++V+E V+ DI F    L+  K  VI A+ +
Sbjct: 373 VDIAIDRGT-----GARALRSVLESVMIDIMFELPTLKGVKKCVITADTI 417



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 5/116 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63
           SP+ I+  L +Y++GQ+ AK+++A+A+ N ++R   Q+   D  + ++ K NILL+GPTG
Sbjct: 79  SPKAIMESLGQYVVGQEIAKKSLAVAVYNHYKRIDSQEWAHDSDEVVIEKSNILLIGPTG 138

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 139 TGKTLLAQTLANLLDVPFTIADATSLTEAGYVGDDVETILARLLYASDFNLERTER 194


>gi|22124935|ref|NP_668358.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           KIM 10]
 gi|45440624|ref|NP_992163.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808642|ref|YP_652558.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Antiqua]
 gi|108811099|ref|YP_646866.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Nepal516]
 gi|145600051|ref|YP_001164127.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Pestoides F]
 gi|149364998|ref|ZP_01887033.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|153950055|ref|YP_001402051.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419302|ref|YP_001607419.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Angola]
 gi|165926541|ref|ZP_02222373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936053|ref|ZP_02224623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011049|ref|ZP_02231947.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212940|ref|ZP_02238975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398781|ref|ZP_02304305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421680|ref|ZP_02313433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423157|ref|ZP_02314910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025450|ref|YP_001721955.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186894327|ref|YP_001871439.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930186|ref|YP_002348061.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           CO92]
 gi|229838760|ref|ZP_04458919.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896086|ref|ZP_04511256.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|229899328|ref|ZP_04514471.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901328|ref|ZP_04516450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|270489514|ref|ZP_06206588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294504887|ref|YP_003568949.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|21263471|sp|Q8ZC66|CLPX_YERPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122979462|sp|Q1C4K9|CLPX_YERPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123246670|sp|Q1CL64|CLPX_YERPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215220|sp|A4TPE2|CLPX_YERPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009021|sp|A7FLC3|CLPX_YERP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687254|sp|A9QZQ2|CLPX_YERPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688402|sp|B1JHS0|CLPX_YERPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691418|sp|B2K6V8|CLPX_YERPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21957774|gb|AAM84609.1|AE013706_4 ATP-dependent specificity component of clpP serine protease,
           chaperone [Yersinia pestis KIM 10]
 gi|45435481|gb|AAS61040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108774747|gb|ABG17266.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Nepal516]
 gi|108780555|gb|ABG14613.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Antiqua]
 gi|115348797|emb|CAL21751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CO92]
 gi|145211747|gb|ABP41154.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Pestoides F]
 gi|149291411|gb|EDM41485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|152961550|gb|ABS49011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352117|gb|ABX86065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis Angola]
 gi|165916198|gb|EDR34805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921469|gb|EDR38666.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990049|gb|EDR42350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205727|gb|EDR50207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960599|gb|EDR56620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051285|gb|EDR62693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057327|gb|EDR67073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751984|gb|ACA69502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186697353|gb|ACC87982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681257|gb|EEO77351.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|229687730|gb|EEO79803.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695126|gb|EEO85173.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701009|gb|EEO89038.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|262362953|gb|ACY59674.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262366872|gb|ACY63429.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270338018|gb|EFA48795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294355346|gb|ADE65687.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|320016342|gb|ADV99913.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+   +     GAR L++++E  L D  +   + D  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398


>gi|329296783|ref|ZP_08254119.1| ATP-dependent protease ATP-binding subunit ClpX [Plautia stali
           symbiont]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S+                               P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A N   T    GAR L++++E  L +  +    ++  + VVID
Sbjct: 359 AKKA-NSRKT----GARGLRSIVEAALLETMYDLPSMEGVEKVVID 399


>gi|262374980|ref|ZP_06068214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           lwoffii SH145]
 gi|262309993|gb|EEY91122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           lwoffii SH145]
          Length = 436

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++      AD   EL   NI+LVGPTG
Sbjct: 63  PHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKVQNNGKKADDSVELSKSNIMLVGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 63/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 238

Query: 292 NTDHILFIASGAF--------------------------HVSRPADL------------- 312
           +T +ILFI  GAF                             + +DL             
Sbjct: 239 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTAEVRKKDETKKLSDLFRQVEATDLVKFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L F E ++ A+A
Sbjct: 299 LIPEFIGRLPVIATLDELDEEALMQILTEPKNALTRQYQHLFDMEDVDLVFEESALRAVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
             AV  N+     GAR L++++E  L +  +   S SD+   TVVI+   ++
Sbjct: 359 KKAVERNT-----GARGLRSILENSLLETMYDLPSRSDV--GTVVINEAVIK 403


>gi|329957342|ref|ZP_08297862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           clarus YIT 12056]
 gi|328523055|gb|EGF50158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           clarus YIT 12056]
          Length = 414

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTASIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRSILTEPKNSIIKQYVKLFEMDGVKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D+ F      + + V+  +Y R
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEHKDSFVVTLDYAR 400



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ DAKR +++++ N ++R  Q   D   E+   NI++VG TG GKT
Sbjct: 67  PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29142799|ref|NP_806141.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213160793|ref|ZP_03346503.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425857|ref|ZP_03358607.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213646004|ref|ZP_03376057.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289827299|ref|ZP_06545982.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|21263470|sp|Q8Z8V1|CLPX_SALTI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25296072|pir||AD0558 ATP-dependent clp protease ATP-binding chain ClpX [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501720|emb|CAD08908.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138431|gb|AAO70001.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|149186484|ref|ZP_01864796.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
 gi|148829711|gb|EDL48150.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
          Length = 418

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   L+ Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 66  TPKEIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHGGKAGDVELAKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +
Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313
            ++T +ILFI  GAF                    HV+               P DLL  
Sbjct: 237 QVDTTNILFICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRRIGELLEKGEPEDLLKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L+      ILT+ ++ L  QY +L + E + L F ED++  +
Sbjct: 297 GLIPEFVGRLPVIATLRDLDTDALITILTEPKNALCKQYAKLFELENVELTFQEDALKKI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A+ A+   +     GAR L++++E +L D  F   D+   T +VIDA+ V
Sbjct: 357 AEKAIARKT-----GARGLRSIVEGILLDTMFDLPDMDGVTEIVIDADVV 401


>gi|148381179|ref|YP_001255720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932077|ref|YP_001385554.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935476|ref|YP_001388960.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. Hall]
 gi|153938984|ref|YP_001392581.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum F str. Langeland]
 gi|168179120|ref|ZP_02613784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum NCTC 2916]
 gi|168183547|ref|ZP_02618211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Bf]
 gi|170756735|ref|YP_001782869.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum B1 str. Okra]
 gi|226950658|ref|YP_002805749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796686|ref|YP_002864238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Ba4 str. 657]
 gi|166989835|sp|A7FYI1|CLPX_CLOB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167008726|sp|A5I6W0|CLPX_CLOBH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009011|sp|A7GIH1|CLPX_CLOBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229889850|sp|B1IND6|CLPX_CLOBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763840|sp|C1FLA5|CLPX_CLOBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491253|sp|C3KU76|CLPX_CLOB6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148290663|emb|CAL84792.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928121|gb|ABS33621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931390|gb|ABS36889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. Hall]
 gi|152934880|gb|ABS40378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum F str. Langeland]
 gi|169121947|gb|ACA45783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum B1 str. Okra]
 gi|182670079|gb|EDT82055.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum NCTC 2916]
 gi|182673331|gb|EDT85292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Bf]
 gi|226844071|gb|ACO86737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262137|gb|ACQ53170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Ba4 str. 657]
 gi|295320565|gb|ADG00943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum F str. 230613]
 gi|322807544|emb|CBZ05119.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           botulinum H04402 065]
          Length = 429

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+GP
Sbjct: 57  LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           NT +ILFI  GAF      + R                             P DLL    
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F ++++  +AD
Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N N+     GAR L+ ++E ++ +I F
Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379


>gi|315185395|gb|EFU19167.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6578]
          Length = 412

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 6/116 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI S LD+Y+IGQ  AK+ +++A+ N ++R     +L  D+  EL   NILL+GPTG
Sbjct: 61  TPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDV--ELEKSNILLLGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A N +  + R
Sbjct: 119 SGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 174



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 62/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYGS-------- 290
           GIV++DE DKI  +  G  I ++R    EGVQ+ LL +VEG+  SV  + G         
Sbjct: 175 GIVYIDEIDKIAKK--GENISITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQEMI 232

Query: 291 -INTDHILFIASGAF---------HVS-------------------------RPADLL-- 313
            I+T +ILFIA GAF          VS                          P DL+  
Sbjct: 233 RIDTTNILFIAGGAFVGLDKIIESRVSEHPMGFGAEVKSRREKNLAELYAQMHPDDLIKF 292

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFP+ V L+ L K D   I+ +  ++++ QYK  +K + + L   +++++A+
Sbjct: 293 GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDVDLVVEDEAVEAI 352

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           AD+A++  +     GAR ++ + E ++ D+ +    +   K VVI  + V+
Sbjct: 353 ADLAIHRKT-----GARGIRAIFEHIMMDVMYEIPSIPGPKRVVITRDVVQ 398


>gi|292493107|ref|YP_003528546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           halophilus Nc4]
 gi|291581702|gb|ADE16159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           halophilus Nc4]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+GPTG GK
Sbjct: 68  TPHEIRDILNQYVIGQNRAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           NT +ILFI  GAF                                       P DL+   
Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEILQAVEPEDLIKYG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+++    ILT+ ++ L  Q+  L + E   ++F ED++ A+A
Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILTEPKNALTKQFARLFEMENSKVEFREDALRAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+   +     GAR L++++E VL D  +    +     VVID   V+
Sbjct: 361 AKAMERKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405


>gi|146310566|ref|YP_001175640.1| ATP-dependent protease ATP-binding subunit ClpX [Enterobacter sp.
           638]
 gi|167009015|sp|A4W7A9|CLPX_ENT38 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145317442|gb|ABP59589.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           sp. 638]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSEKANEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALIAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+     +   GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|118587402|ref|ZP_01544828.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118432226|gb|EAV38966.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 429

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R  + L      EL   NILL+GPTG G
Sbjct: 74  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 133

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 134 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 187



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  +         Y  +
Sbjct: 188 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 247

Query: 292 NTDHILFIASGAF---------------------------------HVSRPAD------- 311
           +T +ILFI  GAF                                  +++  D       
Sbjct: 248 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQLTDQDVIKFG 307

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ L F   ++  +A
Sbjct: 308 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLVFDPKALKEMA 367

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A++  S     GAR L+++ME  +++  +
Sbjct: 368 KIAIDKKS-----GARGLRSIMESTMKETMY 393


>gi|260101782|ref|ZP_05752019.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|112148408|gb|ABI13542.1| Clp protease ATP-binding subunit [Lactobacillus helveticus CNRZ32]
 gi|260084426|gb|EEW68546.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|328468550|gb|EGF39552.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus MTCC 5463]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L +L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|51595310|ref|YP_069501.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 32953]
 gi|61211451|sp|Q66DT3|CLPX_YERPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51588592|emb|CAH20200.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Yersinia pseudotuberculosis IP 32953]
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+   +     GAR L++++E VL D  +   + D  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSMDSVEKVVV 398


>gi|313206080|ref|YP_004045257.1| sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445396|gb|ADQ81751.1| Sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023741|gb|EFT36744.1| ATP-dependent Clp protease ATP-binding subunit clpX [Riemerella
           anatipestifer RA-YM]
 gi|325336480|gb|ADZ12754.1| ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma
           factor 54, interaction [Riemerella anatipestifer RA-GD]
          Length = 390

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 56/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 233

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT +ILFIA GAF                                   V+    R   L+
Sbjct: 234 NTQNILFIAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GRFPV  +L  L K     I+ + +++++ Q+K L K +GI L+FT+++++ + D 
Sbjct: 294 PELLGRFPVITYLDQLTKKTMVRIMKEPKNSIVNQFKALFKIDGIDLEFTDEALEKIVDE 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
                     +GAR L+   E+VLED  F    + +  + I+
Sbjct: 354 TFEKG-----LGARGLRGTTEKVLEDYMFDIDIISKNKITIN 390



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           PREI   LD Y+IGQ  AK+ ++IA+ N ++R    +  +D   E+   NI+++G TG G
Sbjct: 60  PREIKKTLDEYVIGQDQAKKQLSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA
Sbjct: 120 KTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 164


>gi|312128164|ref|YP_003993038.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778183|gb|ADQ07669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 433

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKVESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|150003036|ref|YP_001297780.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           vulgatus ATCC 8482]
 gi|254883674|ref|ZP_05256384.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294775660|ref|ZP_06741168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|319642189|ref|ZP_07996849.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
 gi|149931460|gb|ABR38158.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|254836467|gb|EET16776.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294450504|gb|EFG18996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|317386175|gb|EFV67094.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
          Length = 416

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D+ F     + K   +  ++ +  +G
Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 406



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++VG TG GKT
Sbjct: 69  PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180


>gi|319953652|ref|YP_004164919.1| sigma 54 interacting domain protein [Cellulophaga algicola DSM
           14237]
 gi|319422312|gb|ADV49421.1| Sigma 54 interacting domain protein [Cellulophaga algicola DSM
           14237]
          Length = 411

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAF----------------------HVSRPAD----------------LL 313
           NT++ILFIA GAF                      +  RP +                L+
Sbjct: 235 NTENILFIAGGAFDGIERAINKRLNMQSIGYSASKNEDRPDENNILQYIIPRDLKEFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+    R ILT+ ++ +I QY++L K + + L  T+++++ + + 
Sbjct: 295 PEIIGRLPVLTHMNPLDTEALRAILTEPKNAIIKQYEKLFKMDDVTLTVTDEALNYIVEK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +  D  F      EK + +   Y
Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFELPSSDEKQLKVSRAY 394



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ+  K+ +++A+ N ++R   P+ L DE  +   NI++VG TG GK
Sbjct: 62  PLEIKDFLDTYIIGQERTKKVMSVAVYNHYKRLLQPSSLEDEVEIQKSNIIMVGQTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165


>gi|237725285|ref|ZP_04555766.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D4]
 gi|229436551|gb|EEO46628.1| ATP-dependent protease ATP-binding subunit [Bacteroides dorei
           5_1_36/D4]
          Length = 416

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++VG TG GKT
Sbjct: 69  PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D+ F     + K   +  ++ +  +G
Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKHQMG 406


>gi|170761592|ref|YP_001788550.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A3 str. Loch Maree]
 gi|238688794|sp|B1L1D6|CLPX_CLOBM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169408581|gb|ACA56992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 429

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+GP
Sbjct: 57  LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           NT +ILFI  GAF      + R                             P DLL    
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F ++++  +AD
Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKGIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N N+     GAR L+ ++E ++ +I F
Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379


>gi|53715361|ref|YP_101353.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis YCH46]
 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis NCTC 9343]
 gi|253567250|ref|ZP_04844700.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5]
 gi|265767848|ref|ZP_06095380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_16]
 gi|61211441|sp|Q64NW3|CLPX_BACFR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81313618|sp|Q5L8L7|CLPX_BACFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52218226|dbj|BAD50819.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           fragilis YCH46]
 gi|60494764|emb|CAH09570.1| putative ATP-dependent CLP protease ATP-binding subunit
           [Bacteroides fragilis NCTC 9343]
 gi|251944081|gb|EES84600.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5]
 gi|263252520|gb|EEZ24048.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_16]
 gi|301164819|emb|CBW24379.1| putative ATP-dependent CLP protease ATP-binding subunit
           [Bacteroides fragilis 638R]
          Length = 415

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239

Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313
           NT +ILFI  GAF             HV     SR               P DL     +
Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F  +  + + D 
Sbjct: 300 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           AV        +GAR L++++E ++ D+ F   + D +E  V +D
Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLD 398



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ DAKR +A+++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 68  PVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179


>gi|330503118|ref|YP_004379987.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           mendocina NK-01]
 gi|328917404|gb|AEB58235.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           mendocina NK-01]
          Length = 426

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R     D +D  EL   NILL+GPTG G
Sbjct: 67  APKEISAILDQYVIGQERAKKVLSVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTRNILFICGGAFAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E +L D  +     Q+   VVID
Sbjct: 360 QKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399


>gi|222528716|ref|YP_002572598.1| ATP-dependent protease ATP-binding subunit ClpX
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254763830|sp|B9MQ33|CLPX_ANATD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222455563|gb|ACM59825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHNTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|172041058|ref|YP_001800772.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           urealyticum DSM 7109]
 gi|171852362|emb|CAQ05338.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           urealyticum DSM 7109]
          Length = 424

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 8/120 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
           +P EI + LD+Y+IGQ DAKR +A+A+ N ++R Q+          D   EL   NIL++
Sbjct: 61  TPSEISAFLDKYVIGQDDAKRTLAVAVYNHYKRIQVEEANALARRNDDEVELSKSNILML 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 121 GPTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQSADFDVEKAQR 180



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 56/210 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++   
Sbjct: 181 GIIYIDEVDKIGRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T ++LFI +GAF                                     P DL     +
Sbjct: 241 DTKNVLFIVAGAFAGLEKVIEDRRGKKGLGFGAEVTSKNDQVKDPFQYVEPEDLVKFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  H+  L++     +LT+ ++ L+ QY+ L + + + L F + ++  +A  
Sbjct: 301 PEVIGRLPVVTHVGHLDEDALVQVLTEPKNALVRQYQRLFEMDNVQLAFEDGALREVARQ 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           A+       + GAR L+++MER+L  I +S
Sbjct: 361 AL-----ARETGARGLRSIMERILLPIMYS 385


>gi|146307079|ref|YP_001187544.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina
           ymp]
 gi|166214806|sp|A4XTZ6|CLPX_PSEMY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145575280|gb|ABP84812.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           mendocina ymp]
          Length = 426

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R     D +D  EL   NILL+GPTG G
Sbjct: 67  APKEISAILDQYVIGQERAKKVLSVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTRNILFICGGAFAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E +L D  +     Q+   VVID
Sbjct: 360 QRALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399


>gi|312622970|ref|YP_004024583.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203437|gb|ADQ46764.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|296284616|ref|ZP_06862614.1| ATP-dependent protease ATP-binding subunit ClpX [Citromicrobium
           bathyomarinum JL354]
          Length = 421

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + L+ Y+IGQ+ AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 63  TPSEICATLNDYVIGQERAKRVLSVAVHNHYKRLKHAGKQGDVELAKSNILLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +
Sbjct: 123 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 166



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 174 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 233

Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313
            ++T +ILFI  GAF                    HV              S P DLL  
Sbjct: 234 QVDTTNILFICGGAFAGLDKIIGDRLQKRSIGFGAHVADPDKRRIGELLEKSEPEDLLKF 293

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+      IL + ++ ++ QY +L + EG+ L F +D++ A+
Sbjct: 294 GLIPEFVGRLPVIASLHDLDVDALVTILQEPKNAIVKQYAKLFELEGVELTFNDDALRAI 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+ A+   +     GAR L++++E +L D  +   DL+    VVID + V
Sbjct: 354 AERAIKRKT-----GARGLRSIVEGLLLDTMYDLPDLEGCNEVVIDKDVV 398


>gi|302871326|ref|YP_003839962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574185|gb|ADL41976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|295088061|emb|CBK69584.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           xylanisolvens XB1A]
          Length = 414

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 60/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F   + D +E  V++D  Y ++ +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVMLD--YAKMQL 403



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178


>gi|157374681|ref|YP_001473281.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis
           HAW-EB3]
 gi|189044153|sp|A8FTI0|CLPX_SHESH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157317055|gb|ABV36153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sediminis HAW-EB3]
          Length = 425

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PRE+ + LD Y+IGQ  AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 67  TPRELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NAGPKDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILF+  GAF           H                            P DL   
Sbjct: 240 DTSKILFVCGGAFSGLEKVIEQRSHTGTGIGFGAEVKGEDDKASISDILMQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+ +    IL++ ++ +  Q+  L   EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFDMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A     L +     GAR L++++E +L DI +     +    VVID   V+
Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405


>gi|315650538|ref|ZP_07903604.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487193|gb|EFU77509.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
          Length = 463

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 57/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GIVF+DE DKI  + + N   VS E VQ++LL L+EGS V    G+           +NT
Sbjct: 230 GIVFIDEIDKIAKKKNTNTRDVSGESVQQELLKLLEGSKVEVPVGTNQKNVLAPMETVNT 289

Query: 294 DHILFIASGAFHVS---------------------------------------RPADLLP 314
           D+ILFI  GAF                                          R   ++P
Sbjct: 290 DNILFICGGAFPALDDIIKERLQKNTSVGFNSELKDKYDNETDLYSKVTNEDIRKFGMIP 349

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+K  F+ IL + ++ ++ QYK L++ + + L F +D+ D +A+ A
Sbjct: 350 EFIGRLPVICTLSKLDKDAFKKILNEPKNAILKQYKRLLELDEVELVFDDDATDYIAEQA 409

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           +       D GAR L++++E  + DI +    D     V+I  +Y+  H G
Sbjct: 410 MK-----KDTGARALRSIIEEFMLDIMYEIPKDKNIGRVIITRDYLE-HKG 454



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AK+ +++A+ N ++R  L  D     + K NIL++GPTG GK
Sbjct: 117 APHKIKEMLDEYVIGQDVAKKVISVAVYNHYKRIFLDKDKEGTRIEKSNILMIGPTGSGK 176

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V        R + 
Sbjct: 177 TYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVE-------RAEC 229

Query: 127 SINAEERILDALVGKTATSNTREV 150
            I   + I    + K   +NTR+V
Sbjct: 230 GIVFIDEI--DKIAKKKNTNTRDV 251


>gi|213022389|ref|ZP_03336836.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 168

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 13/107 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166


>gi|52425901|ref|YP_089038.1| ATP-dependent protease ATP-binding subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|61211443|sp|Q65RF7|CLPX_MANSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52307953|gb|AAU38453.1| ClpX protein [Mannheimia succiniciproducens MBEL55E]
          Length = 412

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 65  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSNHGIADVELGKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVIQKLL 165



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 101/233 (43%), Gaps = 60/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 237

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILFI  GAF                      V    D                   
Sbjct: 238 DTSKILFICGGAFAGLDRVVQKRIHKGSGIGFDAEVKGKEDEVSLTDLLKQIETEDLIKY 297

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT ++++A+
Sbjct: 298 GLIPEFIGRLPVVAPLSELDEKALVQILTEPKNALTKQYQALFGLENVELEFTPEALNAM 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           A  A+   +     GAR L++++E  L D  +    L+    VV+D   +  H
Sbjct: 358 AKKALERKT-----GARGLRSIVEGALLDTMYDLPSLEGLVKVVVDEAVINEH 405


>gi|326803638|ref|YP_004321456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651295|gb|AEA01478.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 418

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD--ELMPKNILLVGPTG 63
           P EI   LD Y+IGQ DAK+A+++A+ N ++R    Q+     D  EL   NILLVGPTG
Sbjct: 65  PTEIRQILDDYVIGQTDAKKALSVAVYNHYKRINSNQIKNQDEDNVELQKSNILLVGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 SGKTYLAQTLARILKVPFAIADATSLTEAGYVGEDVENILLKLLQAA 171



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 56/229 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 181 GIIYIDEIDKIATKAENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314
           +T +ILFI  GAF                    ++              P DL     +P
Sbjct: 241 DTTNILFIVGGAFDGIENIIKERTGHKVIGFQATKTTKAEKHDLMTQVIPEDLQKYGLIP 300

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  LN+ D   ILT+ ++ LI QYK+L+  + + L+FT+DS+ A+A  A
Sbjct: 301 EFIGRLPIIASLDELNEEDLERILTEPKNALIKQYKQLLAMDNVQLEFTDDSLRAIAQKA 360

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++  +     GAR L++++E  + ++ +     ++   V+I  E V+ H
Sbjct: 361 IDRKT-----GARGLRSIIEESMLEVMYDIPSREDVSKVIITEEVVKDH 404


>gi|144899461|emb|CAM76325.1| ClpX, ATPase regulatory subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 421

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AK+ +++A+ N ++R Q      + E+   NILL+GPTG GK
Sbjct: 65  TPKDIRAVLDDYVIGQDHAKKVLSVAVHNHYKRLQHGGKAGEVEIAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 177



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 238 DTTNILFICGGAFAGLEKVIGTRGKNNSIGFGAEVRGPDERRTGQILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+      IL+  ++ L+ QY+ L + E   L F ED++ ++A+
Sbjct: 298 IPEFVGRLPVLATLDDLDVGALVEILSKPKNALVKQYQRLFEMEDTRLSFKEDALVSIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ME +L D  F
Sbjct: 358 KAIARKT-----GARGLRSIMESILLDTMF 382


>gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
 gi|123128702|sp|Q0C0G0|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
          Length = 420

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ+ AKR +++A+ N ++R          EL   NILLVGPTG GK
Sbjct: 66  TPQEICDVLDDYVIGQRYAKRILSVAVHNHYKRLSHAGKTDGVELSKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQR 178



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T +ILFI  GAF        +R                            P DL     
Sbjct: 239 DTTNILFICGGAFAGLEKIIAARGENASIGFGATIKSGEERGVGDTLREVEPEDLQKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT  ++ L+ QY+ L   E + L FT +++ A+A 
Sbjct: 299 IPEFIGRLPVLATLEDLDEKALIQILTQPKNALLKQYQRLFDMESVQLTFTPEALVAVAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F   +L+  + VVI+AE V
Sbjct: 359 RAITRKT-----GARGLRSIMESILLDTMFELPNLRGVEEVVINAEVV 401


>gi|20807120|ref|NP_622291.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479267|ref|ZP_05092610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydibrachium pacificum DSM 12653]
 gi|23813862|sp|Q8RC24|CLPX_THETN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|20515614|gb|AAM23895.1| ATP-dependent protease Clp, ATPase subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034805|gb|EEB75536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydibrachium pacificum DSM 12653]
          Length = 425

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 63  PKEIKAFLDQYVIGQDRAKKALAVAVYNHYKRINSKVKSDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLRLIQAA 165



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 235 DTTNILFICGGAFEGIDKIIESRIGKKSLGFGAEVQSKKEKDVGEILKHIM-PEDLLKFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L  L K D   ILT+ ++ L+ QY++L + +G+ L+F + ++D +A
Sbjct: 294 MIPEFIGRVPIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEKKALDLIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           ++A+   +     GAR L+ ++E ++ D+ +   SD   +  +I  E VR
Sbjct: 354 EMALERGT-----GARGLRAILEDIMLDVMYEIPSDETIEKCIITEETVR 398


>gi|330994050|ref|ZP_08317980.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Gluconacetobacter sp. SXCC-1]
 gi|329758996|gb|EGG75510.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Gluconacetobacter sp. SXCC-1]
          Length = 419

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 64  TPREICKILDDYVIGQAHAKKVLSVAVHNHYKRLAHAQKNNDVEIAKSNIMLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 176



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T ++LFI  GAF                     V  P +                   L
Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPEERRMGAVLRDVEPEDLLKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + E + L FTED++  +A 
Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEEVQLTFTEDALRQIAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ ++E +L    F    L
Sbjct: 357 RAIARRT-----GARGLRAILESILLSTMFDLPGL 386


>gi|307718288|ref|YP_003873820.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6192]
 gi|306532013|gb|ADN01547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6192]
          Length = 412

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 6/116 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI S LD+Y+IGQ  AK+ +++A+ N ++R     +L  D+  EL   NILL+GPTG
Sbjct: 61  TPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDV--ELEKSNILLLGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A N +  + R
Sbjct: 119 SGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 174



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYGS-------- 290
           GIV++DE DKI  +  G  I ++R    EGVQ+ LL +VEG+  +V  + G         
Sbjct: 175 GIVYIDEIDKIAKK--GENISITRDVSGEGVQQALLKIVEGTVAAVPPQGGRKHPNQEMI 232

Query: 291 -INTDHILFIASGAF---------HVS-------------------------RPADLL-- 313
            I+T +ILFIA GAF          VS                          P DL+  
Sbjct: 233 RIDTTNILFIAGGAFVGLDKIIESRVSEHPMGFGAEVKSRREKNLAELYAQMHPDDLIKF 292

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFP+ V L+ L K D   I+ +  ++++ QYK  +K + + L   +++++A+
Sbjct: 293 GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDVDLVVEDEAVEAI 352

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           AD+A++  +     GAR ++ + E ++ D+ +
Sbjct: 353 ADLAIHRKT-----GARGIRAIFEHIMMDVMY 379


>gi|153809071|ref|ZP_01961739.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185]
 gi|149128404|gb|EDM19623.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185]
          Length = 414

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQTTARIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L++ +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYVKLLEMDGIKLTFEDSVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y +  +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSGSKKEYEVTLDYAKQQL 403



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 5/122 (4%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57
           KL  N  P+  EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI+
Sbjct: 58  KLNLNELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNII 116

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           +VG TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+
Sbjct: 117 MVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEA 176

Query: 118 RR 119
            +
Sbjct: 177 EQ 178


>gi|28211966|ref|NP_782910.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium tetani
           E88]
 gi|46576541|sp|Q891J8|CLPX_CLOTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28204409|gb|AAO36847.1| ATP-dependent clp protease ATP-binding subunit clpX [Clostridium
           tetani E88]
          Length = 431

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI S LD Y+IGQ DAK+A+++A+ N ++R  L  ++ D  EL   NILL+GPTG GK
Sbjct: 65  PSEIKSYLDDYVIGQDDAKKALSVAVYNHYKRINL-NNVNDDVELQKSNILLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTMAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPHQEFIQL 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           NT +ILFI  GAF      + R                             P DLL    
Sbjct: 237 NTTNILFICGGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L++     ILT+ ++ L+ QYK+L + + + L+F E+++ A+A+
Sbjct: 297 IPEFIGRLPITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAE 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+  ++     GAR L++++E +++DI F   SD     V+I+ E V
Sbjct: 357 EAIRRST-----GARGLRSIIEEIMKDIMFEIPSDESISKVIINEETV 399


>gi|67516135|ref|XP_657953.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4]
 gi|40746599|gb|EAA65755.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4]
 gi|259489415|tpe|CBF89668.1| TPA: ATP-dependent Clp protease, putative (AFU_orthologue;
           AFUA_1G02170) [Aspergillus nidulans FGSC A4]
          Length = 630

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 159/388 (40%), Gaps = 58/388 (14%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LL+GP+GVGKT + R LAR+   PF   + T FT+ GY+G + E  +  L+  A   V
Sbjct: 202 NVLLLGPSGVGKTLMCRSLARVLSVPFSISDCTPFTQAGYIGDDAEVCVHRLLAAANYDV 261

Query: 115 RESRR-----DEV-----------REQASINAEERILDALVGKTATSNTR-EVFRKKLRD 157
            ++ R     DE+           R+      +E +L  L G T     + E    +L  
Sbjct: 262 EQAERGIIVLDEIDKIAAAKVSHGRDVGGSGVQESLLKLLEGTTVQVQAKQERSAPRLSG 321

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
              S    +  + +T      F  PGG +V   +  E+++      R   I       + 
Sbjct: 322 TTSSSYPPNGPLGNTP-----FTPPGGGNVP--HKGEVYNV-----RTDNILFICSGAFA 369

Query: 218 ELMRDESDRLIDMDTVHRDSI---QMVENYGIVFLD---EFDKIVARDSGNGIGVSREGV 271
            L +      + MD + R S+   Q V N      D    +D    +      G   E +
Sbjct: 370 GLHK------VVMDRISRGSMGFGQPVRNPPQTSTDRPHSYDSTANQPVPILPGSEEEAL 423

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHL 326
            +  LP     S+S    S   +   F    A  +    DL     +PE+ GR PV   L
Sbjct: 424 YKKHLPFFTPPSLS----SPEAEPTYF---NALDLINQTDLQNYGFIPELVGRIPVNAAL 476

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            +L++     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +     GA
Sbjct: 477 SALSQPLLVRILTEPRNSLVAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GA 531

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVI 414
           R L+T ME +L D  F       K V++
Sbjct: 532 RALRTEMETILSDAMFETPGSSVKFVLV 559


>gi|322372510|ref|ZP_08047046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
 gi|321277552|gb|EFX54621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
          Length = 408

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+E++  L+ Y++GQ  AKRA+A+A+ N ++R        D   EL   NIL++GPTG G
Sbjct: 63  PKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNEVELQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F ++++ A+A  A
Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQEALGAIASKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F     ++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390


>gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
 gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
          Length = 430

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD---ELMPKNILLVGP 61
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q     P+D      EL   NILL+GP
Sbjct: 64  PREIYEFLDGYVVGQETAKKTLSVAVYNHYKRIQAGGSAPSDSAKADVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T ++LFI  GAF        SR                            P DLL    
Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDAADVFGDVMPEDLLKYGM 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +++L++     ILT+ ++ L+ QYK L + + + LDFT D+++A+AD
Sbjct: 302 IPEFIGRLPVLTSVQNLDREALIRILTEPKNALVRQYKRLFELDNVDLDFTSDALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VV+  E V  H+
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLMSVMYDIPSRKDVARVVVTREVVLEHV 408


>gi|299143347|ref|ZP_07036427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517832|gb|EFI41571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 405

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI S LD Y+I Q  AK+A+A+A+ N ++R  + + +R+   EL   NIL++GPTG G
Sbjct: 60  PEEIKSVLDSYVIKQDKAKKALAVAVYNHYKR--INSSIRNPEIELQKSNILMIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 118 KTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENIILKLIQAA 162



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 172 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQI 231

Query: 292 NTDHILFIASGAF---------HVSRPA-----------------------------DLL 313
           +T +ILFI  GAF          + + +                              L+
Sbjct: 232 DTTNILFIVGGAFDGLDKIIESRIGKTSMGFGSELVDKKKQRENILDKIETGDLLKFGLI 291

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR P+ V L+SL+++    ILT  ++ L+ QYKEL+K + + L+F  +++  +A +
Sbjct: 292 PELIGRLPLTVTLESLDEAALVEILTKPKNALVKQYKELLKLDNVELEFETNALKQIAKI 351

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++  +     GAR L+ V+E ++ DI +
Sbjct: 352 AIDKKA-----GARGLRGVIEHIIMDIMY 375


>gi|187776851|ref|ZP_02993324.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC
           15579]
 gi|187775510|gb|EDU39312.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC
           15579]
          Length = 429

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+GP
Sbjct: 57  LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           NT +ILFI  GAF      + R                             P DLL    
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F ++++  +AD
Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKGIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+N N+     GAR L+ ++E ++ +I F
Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379


>gi|119713090|gb|ABL97159.1| ATP-dependent Clp protease ATP-binding subunit ClpX [uncultured
           marine bacterium EB0_49D07]
          Length = 414

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGK 66
           SP EI ++LD Y+IGQ+ AK+ +++A+ N ++R +  +   + EL   N+LL+GPTG GK
Sbjct: 60  SPLEIFNQLDEYVIGQEKAKKILSVAVYNHYKRLRSNSKKDKIELQKSNVLLLGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 120 TLLAQTLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLL 160



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 57/232 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  I
Sbjct: 173 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEFIQI 232

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T +ILFI  GAF                                     P DL     +
Sbjct: 233 DTSNILFICGGAFSGIDEVIKHRTDNSGIGFGAAVKDTKATVASIVETLEPEDLVKFGLI 292

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     IL + ++ L+ QYK L + + + LDF  +++  +A  
Sbjct: 293 PEFVGRLPVISTLHELDEEALVRILQEPKNALVNQYKYLFEIDEVELDFRTEALIEIAKR 352

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           A+   +     GAR L+++ME +L D  F   ++  + V++D   V LH  D
Sbjct: 353 ALKRKT-----GARGLRSIMEELLMDTMFELPNVDLEKVIVDENSV-LHSTD 398


>gi|317502016|ref|ZP_07960200.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896696|gb|EFV18783.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 497

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+A+A+A+ N ++R  + +D  D  E+   N+L++GPTG G
Sbjct: 142 APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 199

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V      E  EQ
Sbjct: 200 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 253

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             I  +E  +D  + K  TSN R+V  + ++ G
Sbjct: 254 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 283



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 254 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 313

Query: 294 DHILFIASGAF----------------------------HVS-----------RPADLLP 314
            +ILFI +GAF                            H             R   ++P
Sbjct: 314 KNILFICAGAFPDLEDIIKERLTKKTSMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 373

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + +++ +A+ A
Sbjct: 374 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 433

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L+ ++E  + DI +    D     V I  EY+
Sbjct: 434 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 474


>gi|289809697|ref|ZP_06540326.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 254

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL G
Sbjct: 51  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 104

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 105 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 163



 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 164 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 223

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 224 DTSKILFICGGAF 236


>gi|170720928|ref|YP_001748616.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           W619]
 gi|229484079|sp|B1J693|CLPX_PSEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169758931|gb|ACA72247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida W619]
          Length = 427

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+EI   LD+Y+IGQ+ AK+ +++A+ N ++R     + RD      EL   NILL+GP
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLSVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY  L + E + L+F  D++ A+A
Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYARLFEMESVDLEFRSDALKAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     +E   VVID
Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVID 400


>gi|117620337|ref|YP_856543.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|226706638|sp|A0KJU2|CLPX_AERHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117561744|gb|ABK38692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 424

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRSGSESGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGAEVKSKSAKATLSESFAKVEPEDLIKY 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L+F +D+++A+
Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    L     VVID   ++
Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404


>gi|237708013|ref|ZP_04538494.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|265754200|ref|ZP_06089389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
 gi|229457999|gb|EEO63720.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|263234909|gb|EEZ20464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
          Length = 416

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++VG TG GKT
Sbjct: 69  PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D+ F     + K   +  ++ +  +G
Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 406


>gi|302344372|ref|YP_003808901.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640985|gb|ADK86307.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075]
          Length = 583

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 7/113 (6%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPK 54
           ++ F+  P ++V+ LD+YI+ Q++AK  +A  +   + R +  + L+++       ++  
Sbjct: 53  RIKFDLKPDDLVAYLDQYIVRQEEAKAVLATKICTHFNRAKYLSRLQNDDPSDGVGMIKN 112

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           NILL+GPTGVGKT + + +A   G PF+K + TKF+E GYVG +VE +IRDLV
Sbjct: 113 NILLIGPTGVGKTYMIKLIADKLGVPFVKADATKFSETGYVGGDVEDLIRDLV 165



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 93/235 (39%), Gaps = 65/235 (27%)

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           D  D + D+     D I++ + +GIV+LDE DKI       G  VSR GVQR LL  +E 
Sbjct: 156 DVEDLIRDLVREAEDDIELAQ-FGIVYLDEVDKIAGTKGLLGPDVSRSGVQRALLKPMEE 214

Query: 282 SSVSTKYGS----------------------INTDHILFIASGAF--------------- 304
           + V  K                         +NT HILFI SGAF               
Sbjct: 215 TEVDLKVAHDPISQIQAIEQYRKTGRAERRLVNTRHILFIMSGAFGELAEVIRRRRNKAQ 274

Query: 305 -----------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                            H    ADL+      E  GR PV V L  L   D   IL +  
Sbjct: 275 LGFSSQMRAQLDDQAILHEVTGADLVEFGFETEFVGRLPVTVVLDKLEADDLHQILRNPN 334

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           + +I+  K      GI L F ++++  LA+ A  L +     GAR L +V ERV 
Sbjct: 335 NPVIISKKRDFAAYGIELRFEDEALRKLAEEAATLGT-----GARALVSVCERVC 384


>gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKSLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDQEALIQILCEPKNALTKQYAALFELENVNLEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    + E + VVID
Sbjct: 361 AARAMKRKT-----GARGLRSILENVLLETMYELPSMTEVEKVVID 401


>gi|119476203|ref|ZP_01616555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
 gi|119450830|gb|EAW32064.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
          Length = 276

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   + ++  EL   NILLVGPTG G
Sbjct: 69  TPVEIKEILDEYVIGQKRAKKVLAVAVYNHYKRLRYSQEKKEQVELGKSNILLVGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170



 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 243 DTSNILFICGGAF 255


>gi|107101234|ref|ZP_01365152.1| hypothetical protein PaerPA_01002267 [Pseudomonas aeruginosa PACS2]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R     D +D  EL   NIL++GPTG G
Sbjct: 67  APKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDIELGKSNILMIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ A+A
Sbjct: 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E +L D  +     Q+   VVID
Sbjct: 360 HKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399


>gi|328952153|ref|YP_004369487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452477|gb|AEB08306.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
          Length = 417

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI +++D Y+IGQ+ AK+ +++A+ N ++R     ++   EL   NILL+GPTG GKT
Sbjct: 66  PAEIKNQIDEYVIGQERAKKILSVAVYNHYKRINSRVEMDGVELTKSNILLIGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE II +L+ VA
Sbjct: 126 LLAQTLARILNVPFTIADATTLTEAGYVGEDVENIILNLLQVA 168



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTMASVPPKGGRKHPQQEFVKV 237

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  GAF+                                  + +P DLL    
Sbjct: 238 DTTNILFICGGAFNGLEDIINTRIGKKTMGFVADIQSRVHRKQGKTLALVQPQDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL +  + L+ QY++L++ E + L FTE ++ A++ 
Sbjct: 298 IPEFVGRLPVIATLEELDEEALVRILKEPRNALVKQYQKLLEMEQVHLRFTEGALAAISR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+   S     GAR L+ ++E+ + DI +    ++  +  +I+ E +  H
Sbjct: 358 EALKRRS-----GARGLRAILEQAMLDIMYDIPSMKNVRECLINEEVILKH 403


>gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
 gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401


>gi|29349251|ref|NP_812754.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253573098|ref|ZP_04850489.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6]
 gi|46576551|sp|Q8A128|CLPX_BACTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29341159|gb|AAO78948.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837321|gb|EES65421.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6]
          Length = 414

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y +  +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQL 403



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|158336586|ref|YP_001517760.1| ATP-dependent protease ATP-binding subunit ClpX [Acaryochloris
           marina MBIC11017]
 gi|189082482|sp|B0C146|CLPX_ACAM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158306827|gb|ABW28444.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acaryochloris
           marina MBIC11017]
          Length = 447

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD--ELMPKNILLV 59
           PR+I S LD ++IGQ +AK+ +++A+ N ++R  +        A+L D  EL   NILL+
Sbjct: 81  PRDIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSISQASADSVAELDDAIELQKSNILLI 140

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 141 GPTGCGKTLLAQTLAQMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R AD+L            
Sbjct: 261 DTTNILFICGGAFVGLDKIIEQRTGKKAMGFIQDGELRAKEQRTADMLRDLEAEDLVKFG 320

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   + +L++     ILT+  + L+ QY++L++ + + L+F  D+I A+A
Sbjct: 321 MIPEFTGRIPVMSVIDALDEDVLCQILTEPRNALVKQYQKLLRMDRVELEFQPDAIRAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 QEAYRRRT-----GARALRAIVEEIMLDVMY 406


>gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           O395]
 gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           MJ-1236]
 gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae MJ-1236]
 gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae LMA3894-4]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401


>gi|282900540|ref|ZP_06308484.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194593|gb|EFA69546.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 427

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59
           PREI + LD ++IGQ +AK+ +++A+ N ++R          + P +   EL   NILL+
Sbjct: 63  PREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVAQGKANDKSPGEDSVELQKSNILLI 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 123 GPTGCGKTLLAQSLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 182



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 183 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 242

Query: 292 NTDHILFIASGAF---------HVSR--------------------------PADL---- 312
           +T +ILFI  GAF          V +                          P DL    
Sbjct: 243 DTSNILFICGGAFVGLEKVVDHRVGKKSMGFVQSGEGQSREKRVATTLKQLEPDDLVKFG 302

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   ++ L++     ILT   S L+ QY++L+K + + L+F E+++ A+A
Sbjct: 303 MIPEFIGRMPMVAVVEPLDEDALMAILTQPRSALVKQYQKLLKMDNVNLEFKEEALSAIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 363 QEAYRRKT-----GARALRGIVEELMLDVMY 388


>gi|153006263|ref|YP_001380588.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029836|gb|ABS27604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. Fw109-5]
          Length = 412

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y++GQ+ AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 61  PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAA 163



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQV 232

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  GAF                                   +  P DLL    
Sbjct: 233 DTTNILFICGGAFCGLEQIIERRSGGRSLGFGSDVTSKSEKNIGELLAMVEPDDLLKFGM 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT   + L+ QYK L++ +G+ L FT+ ++ A+A 
Sbjct: 293 IPEFVGRLPVITSLEELDEPALIEILTKPRNALVKQYKRLLEMDGVSLKFTDGALKAIAR 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A     T    GAR L+ ++E  + DI +
Sbjct: 353 AA-----TKNKAGARGLRAILESAMLDIMY 377


>gi|2460279|gb|AAB80745.1| heat-shock protein HslU [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 128

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           P G       L  +F   +G  ++K  ++ ++     L+ +E  +L++ + + +D+I  V
Sbjct: 17  PPGMEEMTSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEPAKLVNPEELKQDAIDAV 75

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           E +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G +NTD
Sbjct: 76  EQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVNTD 128


>gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 424

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64
           PREI   LD Y+IGQ+ AK+A+++A+ N ++R +     P +   E+   NILL+GPTG 
Sbjct: 64  PREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 179 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAFH-------------------VSRPA---------------DLL---- 313
           +T ++LFI  GAF                    V RP                DLL    
Sbjct: 239 DTTNVLFICGGAFAGLEKLIESRTGQQGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGM 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L++     ILT+  + L+ QY+ L + +G+ L+FT D+++A+A+
Sbjct: 299 IPEFVGRLPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAE 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +     +   GAR L+ ++E VL  + +
Sbjct: 359 QGI-----IRGTGARGLRAIIEEVLLSVMY 383


>gi|291533786|emb|CBL06899.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas
           hypermegale ART12/1]
          Length = 407

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI   L++Y+IGQ +AK+++++A+ N ++R        D EL   NIL++GPTG GKT
Sbjct: 66  PREIYDVLNQYVIGQDEAKKSLSVAVYNHYKRINRVTKQDDVELQKSNILMLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A N + ++++
Sbjct: 126 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADNDIEQAQK 177



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG----------S 290
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G           
Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEGMLQ 237

Query: 291 INTDHILFIASGAFHVSR----------------------------------PADLL--- 313
           I+T +ILFI  GAF                                      P DLL   
Sbjct: 238 IDTTNILFICGGAFDGIEKIIDARLGKKSLGFGADIKSKRKQTTGEILKNVLPEDLLKCG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L+SL +     IL   ++ L+ QY +L++ +G+ L F E+++  +A
Sbjct: 298 LIPEFIGRVPVVVTLESLTEDALVDILVKPKNALVKQYGKLLEMDGVKLHFDEEALHLIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++ER++ D+ F
Sbjct: 358 KEALERKT-----GARGLRSIIERIMRDVMF 383


>gi|86605508|ref|YP_474271.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           JA-3-3Ab]
 gi|123507236|sp|Q2JW64|CLPX_SYNJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86554050|gb|ABC99008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. JA-3-3Ab]
          Length = 448

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PREI+  LD+Y+IGQ+ AK+ +++A+ N ++R    A+            EL   NIL++
Sbjct: 82  PREIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPNSLGAAELDEVELQKSNILVI 141

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 GPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF-------------------------HVSR------------PADLL- 313
           +T +ILFI  GAF                          V+R            P DL+ 
Sbjct: 262 DTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLAVTREQRLADALKALEPEDLIK 321

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L  L++     ILT  ++ ++ Q ++L++ +G+ L+F   +I A
Sbjct: 322 YGMIPEFIGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAISA 381

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A    +     GAR L+ ++E ++ D+ +     ++ K V I AE V
Sbjct: 382 IAKEAYRRKT-----GARALRAIVEELMLDVMYEVPSRRDIKYVRITAEMV 427


>gi|322418660|ref|YP_004197883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M18]
 gi|320125047|gb|ADW12607.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M18]
          Length = 417

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P+EI   LD Y+IGQ  AK+ +A+A+ N ++R +    P D+  E+   NILL+GPTG G
Sbjct: 66  PQEIKEVLDEYVIGQARAKKVLAVAVYNHYKRVEATTKPGDV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQAA 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILF+  GAF                         V +          P DLL    
Sbjct: 238 DTTNILFVCGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++     IL + ++ LI QY++L + E + L FT+ S+ A+A 
Sbjct: 298 IPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLIAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S    K VVI  E +
Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQSMVKEVVISEEVI 400


>gi|145589118|ref|YP_001155715.1| ATP-dependent protease ATP-binding subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|226706594|sp|A4SXD7|CLPX_POLSQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145047524|gb|ABP34151.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 453

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 29/141 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD----------------- 49
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R Q LP   ++                 
Sbjct: 67  TPHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKES 126

Query: 50  -----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
                      EL   NILL+GPTG GKT +++ LAR+   PF+  + T  TE GYVG +
Sbjct: 127 KLPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186

Query: 99  VEQIIRDLVDVAINIVRESRR 119
           VE II+ L+      V +++R
Sbjct: 187 VENIIQKLLQACDYNVEKAQR 207



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 267

Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 268 DTTNILFICGGAFDGLEKVIQQRTAKTGIGFNATVPGKDERGVSDLLIEVEPEDLIKFGL 327

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L+  EG  L+   +++ A+A 
Sbjct: 328 IPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAK 387

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +    L+  + VVID
Sbjct: 388 KAIARKT-----GARGLRSILEGSLMDVMYDLPSLKNVQKVVID 426


>gi|332637218|ref|ZP_08416081.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella cibaria
           KACC 11862]
          Length = 417

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 5/108 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE---LMPKNILLVGPT 62
           +P+EIV  L+ Y+IGQ +AKR +A+A+ N ++R    L  D   E   L   NI ++GPT
Sbjct: 64  TPQEIVDNLNSYVIGQDEAKRTLAVAVYNHYKRVNAMLTGDTGAEGVELQKSNIAMIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT I++ +A+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQI 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 241 DTTNILFIVGGAFAGIEQMVKERVGAKVIGFGTDSKTVQFKNTDKSIMQQVVPEDLMSFG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L+ L + D   ILT+ ++ L+ QY+ L+  EG+ L FT +++ A+A
Sbjct: 301 LIPEFIGRLPILTALEELTEDDLVRILTEPKNALVKQYQALLALEGVALTFTPEALKAMA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L++++E  + D+ F
Sbjct: 361 HLAIERET-----GARGLRSIIEETMRDVMF 386


>gi|331088165|ref|ZP_08337085.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408821|gb|EGG88284.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 497

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+A+A+A+ N ++R  + +D  D  E+   N+L++GPTG G
Sbjct: 142 APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 199

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V      E  EQ
Sbjct: 200 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 253

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             I  +E  +D  + K  TSN R+V  + ++ G
Sbjct: 254 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 283



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 254 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 313

Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314
            +ILFI +GAF          +++ A                               ++P
Sbjct: 314 KNILFICAGAFPDLEDIIKERLTKKASMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 373

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + +++ +A+ A
Sbjct: 374 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 433

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L+ ++E  + DI +    D     V I  EY+
Sbjct: 434 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 474


>gi|218781695|ref|YP_002433013.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763079|gb|ACL05545.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 6/112 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELM---PKN 55
           KL FN  P E++S LD+YI+ Q  AK  ++  +    NR RR         +L+     N
Sbjct: 55  KLNFNLKPEELISYLDQYIVKQDRAKAVLSTKICTHYNRVRRAMESDKKGPDLIGSIKNN 114

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           +LL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV
Sbjct: 115 VLLLGPTGVGKTYLIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLV 166



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 91/222 (40%), Gaps = 67/222 (30%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY------- 288
           D +++ + YGI+++DE DKI A  +  G  VSR GVQR LL  +E + V  K        
Sbjct: 171 DDVELAQ-YGIIYIDEIDKIAAAHNMMGADVSRTGVQRALLKPMEETEVELKVPHDPVSM 229

Query: 289 ---------------GSINTDHILFIASGAF----------------------------- 304
                            INT +ILFI SGAF                             
Sbjct: 230 IQELERFRRTGQRDASRINTKNILFIMSGAFGDLGEIIKKRMNEKGMGFSAKISSQKEDF 289

Query: 305 ----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
               HV +  DL+      E  GR PV   L++L   D   IL +  + LI+  K     
Sbjct: 290 KYLRHV-KSEDLIKYGFESEFVGRLPVITVLETLAAEDLYTILRNPNNPLIIGKKLDFGA 348

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
            GI + FT++++ ALA  A    +     GAR L + +E  L
Sbjct: 349 YGIDIRFTDNALKALAQKAYEQRT-----GARGLVSAIENAL 385


>gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 417

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 64  PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQILARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313
           +T +ILFI  GAF                       S   D                 L+
Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   ++  +AD+
Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A+        +GAR L+T++E  + DI +   S SD+ +  V+I  E +
Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397


>gi|239995518|ref|ZP_04716042.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii ATCC 27126]
          Length = 424

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +   D+ +  EL   NILL+GPTG GK
Sbjct: 68  PSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312
           +T  ILFI  GAF                               +S       P DL   
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D+++A+
Sbjct: 300 GLIPEFIGRLPVVTSLEELNEEALIQILREPKNAITKQYGALFSMEDVELEFRDDALNAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL D  +    +++   VVID   +R
Sbjct: 360 AKKAMDRKT-----GARGLRSIVEAVLLDTMYDLPSMEDVSKVVIDETVIR 405


>gi|327480674|gb|AEA83984.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri DSM 4166]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  Q       EL   NILL+GPTG GK
Sbjct: 67  APKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTRNILFICGGAFAGLEKVIQSRSTQGGIGFNAEVRSKDPGKKIGEALRAVEPDDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ A+A
Sbjct: 300 LIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEFRPDALKAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     ++   VVID
Sbjct: 360 HRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 399


>gi|308446478|ref|XP_003087188.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
 gi|308260041|gb|EFP03994.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
          Length = 436

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 7/108 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGPT 62
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++      P D   E+   NILL+GPT
Sbjct: 63  PHEIRAALDQYVIGQDTAKKTLSVAVYNHYKRLKVSQTGHKPKDAV-EIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LARL   PF   + T  TE GYVG +VE II+ L+  A
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKA 169



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 63/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T +ILFI  GAF                    +V    D                    
Sbjct: 239 DTANILFICGGAFSGLEKVVQQRQEKGGIGFTANVKNKDDSKKVSELFRQVEAADLVKFG 298

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L + E + L F + ++ A+A
Sbjct: 299 LIPEFIGRLPVIATLEELDQEALMQILTEPKNALTRQYQYLFEMENVDLLFEDSALRAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+  N+     GAR L++++E VL +  +   S SD+   TV+I+
Sbjct: 359 KKALERNT-----GARGLRSILENVLLETMYDLPSRSDI--GTVIIN 398


>gi|304395500|ref|ZP_07377383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308185909|ref|YP_003930040.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
 gi|304356794|gb|EFM21158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308056419|gb|ADO08591.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
          Length = 423

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQCEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    + + + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVID 399


>gi|219685275|ref|ZP_03540095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii Far04]
 gi|219673371|gb|EED30390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii Far04]
          Length = 435

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D ++++I QY  + K + + L F +D+++++ D A
Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMKILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172


>gi|332141944|ref|YP_004427682.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551966|gb|AEA98684.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 424

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +   D+ +  EL   NILL+GPTG GK
Sbjct: 68  PTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312
           +T  ILFI  GAF                               +S       P DL   
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D+++A+
Sbjct: 300 GLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSMEDVELEFRDDALNAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    + +   VVID   +R
Sbjct: 360 AKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSMDDVSKVVIDETVIR 405


>gi|298384792|ref|ZP_06994351.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 1_1_14]
 gi|298261936|gb|EFI04801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 1_1_14]
          Length = 414

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +GI L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           AV        +GAR L++++E ++ D+ F      +K   +  +Y +  +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQL 403



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|256396399|ref|YP_003117963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
 gi|256362625|gb|ACU76122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
          Length = 438

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           P+EI   LD Y+IGQ++AK+++++A+ N ++R Q     R+         EL   NILL+
Sbjct: 64  PKEIYDFLDEYVIGQENAKKSLSVAVYNHYKRVQAGDYQRERGGRRGEQIELAKSNILLL 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174



 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 184 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVSSVPPQGGRKHPHQEFLQI 243

Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313
           +T ++LFI +GAF          V++                         P DLL    
Sbjct: 244 DTTNVLFIVAGAFEGLDKIVDSRVNKRGMGFTAQLRSRYDVDTTDVFADVLPEDLLKYGM 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L+++    IL +  + LI QY++LM+ +G+ L F +D+++A+AD
Sbjct: 304 IPEFVGRLPVVTSVHKLDRAALVRILVEPRNALIKQYQKLMELDGVELVFEDDAVEAIAD 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +   S SD+   TVVI  E VR H+
Sbjct: 364 QAI-LRGT----GARGLRAIMEEVLMSVMYEVPSHSDV--GTVVITGEVVREHV 410


>gi|197105277|ref|YP_002130654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phenylobacterium zucineum HLK1]
 gi|238690156|sp|B4RCN8|CLPX_PHEZH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|196478697|gb|ACG78225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phenylobacterium zucineum HLK1]
          Length = 420

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKNNDVELGKANILLIGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTVADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P +                   L
Sbjct: 238 DTTNILFICGGAFAGLEKIISARGQGTSIGFGAKVADPDERRTGEIFRQVEPDDLLRFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++     ILT+ ++  + QY  L + E + L FTED++ A+A 
Sbjct: 298 IPEFIGRLPVIATLDDLDEKALVKILTEPKNAFVKQYVRLFEMENVGLTFTEDALMAVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E VL D  +
Sbjct: 358 KAIQRKT-----GARGLRSILEGVLLDTMY 382


>gi|86159771|ref|YP_466556.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197123825|ref|YP_002135776.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|220918590|ref|YP_002493894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85776282|gb|ABC83119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196173674|gb|ACG74647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. K]
 gi|219956444|gb|ACL66828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 412

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y++GQ+ AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 61  PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAA 163



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQV 232

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  GAF                                   +  P DLL    
Sbjct: 233 DTTNILFICGGAFCGLEQIIERRSGGRSLGFGTDVKSKTEKNVGELLAMVEPDDLLKFGM 292

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT   + L+ QYK+L++ +G+ L FT+ ++ A+A 
Sbjct: 293 IPEFVGRLPVITSLEELDQPALVDILTRPRNALVKQYKKLLEMDGVNLKFTDGALVAIAR 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E  + DI +
Sbjct: 353 AAMKNKA-----GARGLRAILENAMLDIMY 377


>gi|7594817|dbj|BAA94669.1| ATPase subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 423

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAXAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|241896578|ref|ZP_04783874.1| ATP-dependent protease ATP-binding subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870170|gb|EER73921.1| ATP-dependent protease ATP-binding subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 415

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 9/110 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
           +PREIV  L+ Y+IGQ DAK  +A+A+ N ++R  + A L  E       L   NI ++G
Sbjct: 64  TPREIVDNLNEYVIGQDDAKHTLAVAVYNHYKR--VNAKLTGETGIEGVDLQKSNIAVIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT I++ +A+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 PTGSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQI 240

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                       P DL+   
Sbjct: 241 DTTNILFIVGGAFAGIEQMVKERLGAKVIGFGTDAKTQQLQSSDKSIMQQVLPEDLMNFG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L+ L +SD   ILT+ ++ L+ QY+ L+  E + L FT+D++ A+A
Sbjct: 301 LIPEFIGRLPILTALEELTESDLVRILTEPKNALVKQYQALLALEDVDLKFTDDALKAMA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
            +A+   +     GAR L++++E V+ D+ F     ++ T V+  E
Sbjct: 361 HLAIERET-----GARGLRSIIEEVMRDVMFDVPSREDVTGVVITE 401


>gi|332140446|ref|YP_004426184.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550468|gb|AEA97186.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 346

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +   D+ +  EL   NILL+GPTG GK
Sbjct: 68  PTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 66/166 (39%), Gaps = 54/166 (32%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF------------------------------HVS------RPAD---- 311
           +T  ILFI  GAF                               +S       P D    
Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
            L+PE  GR PV   L+ LN+     IL + ++ +  QY  L   E
Sbjct: 300 GLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSME 345


>gi|15596999|ref|NP_250493.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAO1]
 gi|116049752|ref|YP_791441.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152987449|ref|YP_001348853.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PA7]
 gi|218892244|ref|YP_002441111.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa LESB58]
 gi|254234896|ref|ZP_04928219.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa C3719]
 gi|254240195|ref|ZP_04933517.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 2192]
 gi|296389807|ref|ZP_06879282.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAb1]
 gi|313110499|ref|ZP_07796384.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 39016]
 gi|21263483|sp|Q9I2U0|CLPX_PSEAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122258863|sp|Q02KU5|CLPX_PSEAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214805|sp|A6V718|CLPX_PSEA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706595|sp|B7VB75|CLPX_PSEA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9947785|gb|AAG05191.1|AE004606_5 ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAO1]
 gi|115584973|gb|ABJ10988.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126166827|gb|EAZ52338.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa C3719]
 gi|126193573|gb|EAZ57636.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 2192]
 gi|150962607|gb|ABR84632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PA7]
 gi|218772470|emb|CAW28252.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa LESB58]
 gi|310882886|gb|EFQ41480.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 39016]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R     D +D  EL   NIL++GPTG G
Sbjct: 67  APKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDIELGKSNILMIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ A+A
Sbjct: 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E +L D  +     Q+   VVID
Sbjct: 360 RKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399


>gi|197121674|ref|YP_002133625.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|196171523|gb|ACG72496.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. K]
          Length = 367

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
            +PREI + L R++IGQ+ AKRA+AIA  +  +R  +    R+  + K N+LL+GPTG G
Sbjct: 14  LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLIGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + +++R
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQR 127



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 52/223 (23%)

Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289
           GIVF+DE DKI  R   +  G G   +  EGVQ+ LL L+EG  V    G          
Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187

Query: 290 --SINTDHILFIASGAFH--VSRPAD----------------------------LLPEIQ 317
              ++T  ILF+ +G F    +   D                            +L E  
Sbjct: 188 TVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARSGAAAARRRIRPRDLVEYGMLAEFL 247

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ ++  L   A   
Sbjct: 248 GRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALRELVAFARER 307

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            +     GAR L+ V+E VL ++ F A +     V++DA +VR
Sbjct: 308 GA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVR 345


>gi|54309797|ref|YP_130817.1| ATP-dependent protease ATP-binding subunit ClpX [Photobacterium
           profundum SS9]
 gi|61211506|sp|Q6LNW1|CLPX_PHOPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46914235|emb|CAG21015.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium profundum SS9]
          Length = 426

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFSADVRSKSEERTISDLFKKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDQEALVKILREPKNALTKQYAALLELENVELEFRDDALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL D  +   S +    VVID
Sbjct: 361 AHKAMARKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVID 401


>gi|312792982|ref|YP_004025905.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180122|gb|ADQ40292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 433

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDLYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|291522586|emb|CBK80879.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus
           catus GD/7]
          Length = 422

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 50/205 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKYGSI-- 291
           GI+++DE DKI  + S   I   VS EGVQ  LL L+EG+ V+            G+I  
Sbjct: 164 GIIYIDEIDKIGRKGSNPSITRDVSGEGVQAALLKLIEGAEVTFPANGGRKNPSGGNIPF 223

Query: 292 NTDHILFIASGAFH-------------------VSRPAD-------------LLPEIQGR 319
           +T ++LFI  GAF                      + AD             ++PE  GR
Sbjct: 224 DTSNVLFIVGGAFEGMFDDNDKQSSSIGFINSASCKTADEHEITAEKLKAFGMMPEFIGR 283

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FPV   L+ L+ +D + +LT+ + NL+ +YK L+K + + L F E+++D +A  A     
Sbjct: 284 FPVIAQLEELSTNDLKRVLTEPKDNLVDEYKALLKADNVNLVFEEEALDKIAQKAAEKK- 342

Query: 380 TVGDIGARRLQTVMERVLEDISFSA 404
               IGAR L+++ME ++ DI F A
Sbjct: 343 ----IGARGLRSIMENMMLDIMFDA 363



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++I+S L+ YIIGQ+ AK+ +++A+ N  +R     D   ++   NILL GPTG GKT
Sbjct: 55  TPKKIMSILNDYIIGQEKAKKILSVAVYNHKKRLY---DKTGKIRKSNILLAGPTGSGKT 111

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF+ V  T  T+ GYVG +VE II  LV  A   + +++R
Sbjct: 112 YLAQTIAKVLDVPFVIVNATSLTQSGYVGDDVESIITKLVMKANGNIDKAQR 163


>gi|291616550|ref|YP_003519292.1| ClpX [Pantoea ananatis LMG 20103]
 gi|291151580|gb|ADD76164.1| ClpX [Pantoea ananatis LMG 20103]
 gi|327392982|dbj|BAK10404.1| ATP-dependent Clp protease ATP- binding subunit ClpX [Pantoea
           ananatis AJ13355]
          Length = 423

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKATEGELLSQCEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVDLEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    + + + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVID 399


>gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
 gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
          Length = 419

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 64/102 (62%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+E+ + LD Y+IGQ +AK+ +++A+ N ++R         EL   N+L++GPTG GKT 
Sbjct: 74  PKELKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMRGDKTDVELQKSNVLMLGPTGSGKTL 133

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LAR  G PF   + T  TE GYVG +VE II  L+  A
Sbjct: 134 LAQTLARTLGVPFAIADATTLTEAGYVGEDVENIILKLIQAA 175



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 57/207 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTMASVPPQGGRKHPQQELIQI 244

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PAD-----L 312
           +T +ILFI  GAF                      V +             P D     L
Sbjct: 245 DTTNILFICGGAFDGLEKIIEQRIEAGSMGFGANIVDKKNRRIGDLLRQVLPQDFVKFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+ V L  L + D   ILT+ +++L+ QY+ L   +   L FTE+++  +A 
Sbjct: 305 IPEFIGRVPINVALNQLTEEDMIHILTEPKNSLVKQYEALFAMDDTRLTFTEEALREIAK 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLED 399
            ++   +     GAR L+++ME V+ D
Sbjct: 365 KSIERKT-----GARGLRSIMENVMMD 386


>gi|225378749|ref|ZP_03755970.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM
           16841]
 gi|225209408|gb|EEG91762.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM
           16841]
          Length = 425

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+ + LD Y+IGQ  AK+ +++A+ N ++R    +D   EL   NIL++GPTG GK
Sbjct: 68  IKPEEMKAFLDEYVIGQDKAKKVLSVAVYNHYKRIMAGSDSDVELQKSNILMLGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 TLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 59/213 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G         
Sbjct: 179 QHGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELI 238

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPAD--- 311
            I+T +ILFI  GAF                                   HV  P D   
Sbjct: 239 PIDTTNILFICGGAFDGLEKIIETRLDQKSIGFNAEVHAKDEYNVGEVLKHV-LPQDFVK 297

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GR PV V L  L+K     IL + ++ L+ QYK+L + +G+ L+F +D+++A
Sbjct: 298 FGLIPEFIGRVPVTVTLDMLDKDAMVRILCEPKNALVKQYKKLFELDGVNLEFDKDALEA 357

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + D A+   +     GAR L+ +ME V  D+ +
Sbjct: 358 IVDKALERKT-----GARGLRAIMEAVTLDLMY 385


>gi|95930402|ref|ZP_01313138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133442|gb|EAT15105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfuromonas acetoxidans DSM 684]
          Length = 414

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y++GQ  AK+ +++A+ N ++R +  A   D E+   NILL+GPTG GK
Sbjct: 63  APAEIRATLDDYVVGQNWAKKVLSVAVYNHYKRIRYAAKNDDVEIQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  LV  A   + +++R
Sbjct: 123 TLLAQTLARVLNVPFAMADATNLTEAGYVGEDVENIVLSLVQAADYDIEKAQR 175



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  +
Sbjct: 176 GIIYIDEIDKIARKSESPSITRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQEFIKV 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      +S+                             P DLL    
Sbjct: 236 DTANILFICGGAFSGLEDVISQRIGKKSIGFGANVRMPSETTLGKLLKDIEPGDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++    LIL + ++ L+ QY++L+  E + L FT+ ++ A+A 
Sbjct: 296 IPEFIGRLPVIATLEELDEEALVLILKEPKNALVRQYQKLLDLEDVALKFTDGALVAVAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A    +     GAR L++++E V+ DI +
Sbjct: 356 EAARRKT-----GARGLRSILEEVMLDIMY 380


>gi|167522799|ref|XP_001745737.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776086|gb|EDQ89708.1| predicted protein [Monosiga brevicollis MX1]
          Length = 595

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGS-------SVSTKYG----SI 291
           GIVFLDE DKI +   G      VS EGVQ+ LL L+EG+       S S   G    SI
Sbjct: 330 GIVFLDEIDKIGSPKGGFVATRDVSGEGVQQALLKLLEGTIVQVPDKSASKVRGQESYSI 389

Query: 292 NTDHILFIASGAFH-----------------------VSRPAD----------------L 312
           +T +ILFI SGAF+                          P D                L
Sbjct: 390 DTSNILFIGSGAFNGLEKLISNRQAKGSLGFNATLKDPKAPVDGKLLRSVISTDLVKFGL 449

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GRFP  VHL++L+++D   +LT+ + +L+ QYK L + +   L     +++A+AD
Sbjct: 450 IPEFVGRFPCVVHLEALDRNDLIHVLTEPKHSLLSQYKGLFRMDNAELVLEPSALEAIAD 509

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+        IGAR L++++E+VL D  F        +V+I+ + V
Sbjct: 510 KALERG-----IGARGLRSILEQVLLDAMFDTPGSTHASVIINDKVV 551



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 11/120 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------LMPKNILLV 59
           PR+IV+ L+ Y++GQ  AK+ +A+A+ N ++R  + A+L++E             NIL+ 
Sbjct: 212 PRQIVNTLNEYVVGQSYAKKVLAVAVYNHYKR--VSANLKEESSEVAHDTRFDKSNILMC 269

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R LA +   P    + T  T+ GYVG +VE ++  L+      V +++R
Sbjct: 270 GPTGSGKTLLARTLAEILDVPIAIADCTSLTQAGYVGEDVESVLYKLLAACNFNVEQAQR 329


>gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Alicycliphilus denitrificans BC]
 gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
 gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans BC]
 gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
          Length = 421

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   +  A   D EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDSYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR    PF+  + T  TE GYVG +VE I++ L+      V  ++R
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDVERAQR 181



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 59/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVKSKKQRSLTEVFQDIEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 302 IPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPAALKAIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
            A+   +     GAR L++++E+ L    F   ++   EK VV +A
Sbjct: 362 KAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEA 402


>gi|313903080|ref|ZP_07836474.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466582|gb|EFR62102.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter subterraneus DSM 13965]
          Length = 419

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  L   + D EL   NIL++GPTG GK
Sbjct: 63  KPAEIKAFLDQYVIGQERAKKILSVAVYNHYKRIHLGGRIDDVELQKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 236 DTTNILFICGGAFEGLDKIIASRIGRRVMGFGAEVRSKQETNVGDILRHIMPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L +L++     ILT+ ++ L+ QY++L+  + + L+F  +++ A+A 
Sbjct: 296 IPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYQKLLALDNVELEFEPEALRAIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ D+ +
Sbjct: 356 EALKRNT-----GARGLRAIVEELMLDLMY 380


>gi|294011931|ref|YP_003545391.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
 gi|292675261|dbj|BAI96779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
          Length = 422

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R      P ++  EL   NILLVGPTG 
Sbjct: 66  TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEV--ELAKSNILLVGPTGC 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 124 GKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 178



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    HV+ P +                   L
Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+ +    IL + ++ L+ QY +L   E + L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVIATLEDLDVAALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 359 KAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401


>gi|212690530|ref|ZP_03298658.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
 gi|212666879|gb|EEB27451.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
          Length = 370

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 135 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 194

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 195 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 254

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 255 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 314

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D+ F     + K   +  ++ +  +G
Sbjct: 315 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 360



 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++VG TG GKT
Sbjct: 23  PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 82

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 83  LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 134


>gi|162148814|ref|YP_001603275.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545438|ref|YP_002277667.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189044136|sp|A9HRV3|CLPX_GLUDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161787391|emb|CAP56986.1| ATP-dependent Clp protease ATP-binding subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533115|gb|ACI53052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 419

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NILLVGPTG GK
Sbjct: 64  TPKEICKVLDDYVIGQFYAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNILLVGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T ++LFI  GAF      +S                              P DLL    
Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPDERRTGAILRDVEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + EG+ L FT+D++  +A 
Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEGVKLTFTDDALKQVA- 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
               L +     GAR L+ +ME +L    F    L+
Sbjct: 356 ----LRAIARRTGARGLRAIMESILLSTMFDLPGLE 387


>gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium
           caulinodans ORS 571]
 gi|172047857|sp|A8HYF4|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 422

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------------HVSRPADL------------- 312
           +T +ILFI  GAF                             RP +L             
Sbjct: 238 DTTNILFICGGAFAGLDKIISSRSKGGTSIGFGAKVAPVEERRPGELFREVEPEDLLKYG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++  + IL + ++ L+ QY+ L + E + L   E+++ A+A
Sbjct: 298 LIPEFIGRLPVLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEALGAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 358 RKAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVV 401


>gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
 gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
          Length = 391

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 32  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 85

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 86  GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 133



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 146 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 205

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 206 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 265

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 266 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 325

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 326 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 366


>gi|329850565|ref|ZP_08265410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           biprosthecum C19]
 gi|328840880|gb|EGF90451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           biprosthecum C19]
          Length = 387

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 32  TPKEIREVLDDYVIGQSQAKKVLSVAVHNHYKRLNHAQKGNDVELAKSNIMLIGPTGSGK 91

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 92  TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 144



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 145 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 204

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 205 DTTNILFICGGAFAGLEKIISGRGKGSSIGFGASVKDPEDRRTGEVLRDVEPDDLMKFGL 264

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ LI QY+ L + E + L+FT +++ ++A 
Sbjct: 265 IPEFIGRLPVLATLEDLDEVTLVKILTEPKNALIKQYQRLFEMENVSLNFTPEALMSVAR 324

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+     V   GAR L++++E +L D  +    +Q  + VVI+ E V
Sbjct: 325 KAI-----VRKTGARGLRSILEAILLDTMYELPTMQGVEEVVINGEVV 367


>gi|312876448|ref|ZP_07736432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796806|gb|EFR13151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 432

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 236 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +D+++A+AD
Sbjct: 296 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 356 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 400



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 62  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 166


>gi|311743053|ref|ZP_07716861.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313733|gb|EFQ83642.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 422

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGPT 62
           P EI + L+ Y+IGQ+ AKR+++ A+ N ++R Q  +      D + EL   NIL+VGPT
Sbjct: 64  PHEIFAFLEGYVIGQEGAKRSLSTAVYNHYKRVQAQSAGGRGKDDQVELAKSNILMVGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF------------HVS----------------------RPADLL---- 313
           +T ++LFI  GAF             VS                       P DLL    
Sbjct: 241 DTTNVLFIVGGAFAGLEEIIEQRNGKVSVGFNSEPSASTPTSAEKTYARVEPTDLLKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L+K     ILT+  + L  QY+ L + +GI L+FTED+ D +A+
Sbjct: 301 IPEFIGRLPVIASVNKLDKEALIRILTEPRNALSKQYERLFEIDGIELEFTEDAFDEMAE 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +A+       D GAR L++++E VL+   F      +   VV+D   VR
Sbjct: 361 LALKR-----DTGARGLRSIVEEVLQPTMFDVPSRDDAARVVVDGAVVR 404


>gi|307293096|ref|ZP_07572942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
 gi|306881162|gb|EFN12378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
          Length = 422

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R      P ++  EL   NILLVGPTG 
Sbjct: 66  TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEV--ELAKSNILLVGPTGC 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 124 GKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 178



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    HV+ P +                   L
Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+ +    IL + ++ L+ QY +L   E + L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVIATLEDLDVTALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 359 KAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401


>gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442839|gb|EDP19844.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii SL3/3]
          Length = 440

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI   LD+Y+IGQ +AKR +++++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 82  MTPAEIKEGLDQYVIGQDEAKRVLSVSVYNHYKRILSGKGGDVELQKSNVLLLGPSGVGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 185



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   V  EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 195 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 254

Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312
           +T +ILFI  GAF     ++ R  D                                  L
Sbjct: 255 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSALKDNSTEAERALLRKVEPHDLVKFGL 314

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + L FT++++ A+A 
Sbjct: 315 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLGMDNVELTFTDEALHAIAR 374

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +   +     GAR L++VME +L  I +
Sbjct: 375 KTIERKT-----GARGLRSVMESILLPIMY 399


>gi|302874446|ref|YP_003843079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
 gi|307690947|ref|ZP_07633393.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
 gi|302577303|gb|ADL51315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
          Length = 426

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI + LD+Y++GQ+ AK+++A+A+ N ++R  + +++ +   EL   NILL+GPTG G
Sbjct: 63  PMEIKTHLDQYVVGQESAKKSLAVAVYNHYKR--INSNIANDDVELQKSNILLLGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTFLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           NT +ILFI  GAF           S+                         P DLL    
Sbjct: 235 NTANILFICGGAFDGIEKIIEKRTSKGSMGFGADITSKKEKNIGETLKELMPGDLLKYGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL++     IL + ++ L+ QYK+L   +G+ LDF E ++ A+A 
Sbjct: 295 IPEFVGRLPIVVTLQSLDEEALVKILYEPKNALVKQYKKLFAMDGVDLDFDEKALRAIAK 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
            A+  ++     GAR L+ ++E +++DI F   S  D+++ T++ D
Sbjct: 355 EAIERST-----GARGLRAIIEDMMKDIMFEIPSKDDVKKVTILED 395


>gi|331003804|ref|ZP_08327296.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411996|gb|EGG91393.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 427

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ  AK+ +++A+ N ++R +       E+   NIL++GPTG GK
Sbjct: 63  LKPKEIKNFLDEYVIGQDSAKKVLSVAVYNHYKRIKSKKSAEVEIQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EGS  SV  + G          
Sbjct: 175 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGSMASVPPQGGRKHPQQELIH 234

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                   +  P DL    
Sbjct: 235 IDTTNILFICGGAFDGLEKIVENRLSKGSIGFNSDVVEKNSKSVDELFKMVLPGDLTKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L  L+K     I+T  ++ +  QY++L + + + L+F E +++ +A
Sbjct: 295 LIPEFIGRVPVTVSLDMLDKDALVQIMTKPKNAITKQYQKLFELDDVKLEFDEKAVEEVA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++A+        IGAR L++++E V+ D+ +
Sbjct: 355 NLALERK-----IGARGLRSILEGVMTDMMY 380


>gi|329962625|ref|ZP_08300573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           fluxus YIT 12057]
 gi|328529656|gb|EGF56554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           fluxus YIT 12057]
          Length = 414

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAARNTAVIDKNNLMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + LDF +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYVKLFEMDNVKLDFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E ++ D  F      + + V+  +Y R
Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDSFVVTLDYAR 400



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++VG TG GKT
Sbjct: 67  PVEIKGFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKEGGDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|229163428|ref|ZP_04291379.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus R309803]
 gi|228619997|gb|EEK76872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus R309803]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404


>gi|146295916|ref|YP_001179687.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166214768|sp|A4XHW1|CLPX_CALS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145409492|gb|ABP66496.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 433

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      + R                             P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIERRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +++++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R     + +D  E+   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDNRKDDVEIQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|300715592|ref|YP_003740395.1| ATP-dependent Clp protease ATP-binding protein ClpX [Erwinia
           billingiae Eb661]
 gi|299061428|emb|CAX58540.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           billingiae Eb661]
          Length = 424

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      +S+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVDTGTGIGFGATVKGTAEKATEGQLLEQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVDLEFREEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    + + + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLNTMYDLPSMDDVEKVVID 399


>gi|219684284|ref|ZP_03539228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii PBr]
 gi|219672273|gb|EED29326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii PBr]
          Length = 435

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D ++++I QY  + K + + L F +D+++++ D A
Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172


>gi|71281243|ref|YP_270451.1| ATP-dependent protease ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
 gi|123631419|sp|Q47XL9|CLPX_COLP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71146983|gb|AAZ27456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
          Length = 424

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           SP EI   LD Y+IGQ  AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 67  SPIEIRESLDEYVIGQDHAKKVLAVAVYNHYKR------LRNGDNHNGIELGKSNILLIG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 121 PTGSGKTLLAQTLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 240 DTSKILFICGGAFAGLDKVVEQRNHTGTGIGFGAEVRGKDQEISLTDRLADVEPQDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L+ L+++    IL + ++ L  Q+  L   E + L+F  D++ A+
Sbjct: 300 GLIPEFIGRLPVLATLRELDEAALIQILQEPKNALTKQFTALFDMENVELEFRSDALHAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL D  +    ++    +V+D   ++
Sbjct: 360 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSMENVSKIVVDENTIK 405


>gi|15603842|ref|NP_246916.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431416|sp|P57981|CLPX_PASMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12722416|gb|AAK04061.1| ClpX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 411

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 62  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ LV
Sbjct: 122 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLV 162



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 234

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313
           +T  ILFI  GAF           HV                           P DL+  
Sbjct: 235 DTSKILFICGGAFAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKF 294

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ LI QY+ L   E + L+F+ +++ A+
Sbjct: 295 GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAM 354

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E +L D  +    LQ  EK +V
Sbjct: 355 AKKALARKT-----GARGLRSIVEAILLDTMYDLPSLQHLEKVIV 394


>gi|298207460|ref|YP_003715639.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850096|gb|EAP87964.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 410

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T++ILFIA GAF                          + R        P DL     +
Sbjct: 234 DTENILFIAGGAFDGIDRKITKRLNMQAVGFSASLSEDQIERDNLLKYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  ++  L+K   R ILT+ ++ +I QYK+L + + +    T+ ++D + + 
Sbjct: 294 PEIIGRLPVLTYMNPLDKGTLRAILTEPKNAIIKQYKKLFEMDEVDFHITDGALDYIVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +  D  F   D  EK   +   Y
Sbjct: 354 AIEYQ-----LGARGLRSLCEEIFTDAMFDLPDSDEKEFKVTKAY 393



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P  I + LD Y+IGQ+  KR +++A+ N ++R  Q P+D   E+   NI++VG TG GKT
Sbjct: 62  PHAIKAFLDGYVIGQEHTKRVMSVAVYNHYKRLLQQPSDDDIEIQKSNIIMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            I++ +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LIAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|224025974|ref|ZP_03644340.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
 gi|224019210|gb|EEF77208.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
          Length = 386

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 151 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 210

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           NT +ILFI  GAF                          V R        P DL     +
Sbjct: 211 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKETVKVDRNNLMQYIAPQDLKSFGLI 270

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L + +G+ L+F  +  + + D 
Sbjct: 271 PEIIGRLPILTYLNPLDRQALRNILTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDK 330

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L+ ++E ++ D+ F     +  + V+  EY +
Sbjct: 331 AVEYK-----LGARGLRAIVETIMMDVMFDLPSRKVDSFVVTLEYAK 372



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD+Y+IGQ DAKR +++A+ N ++R   P    D E+   NI++VG TG GKT
Sbjct: 39  PKDIKEFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPVTKDDVEIEKSNIIMVGSTGTGKT 98

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V E+ R
Sbjct: 99  LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVEEAER 150


>gi|188996269|ref|YP_001930520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931336|gb|ACD65966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 408

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R   ++L  D   E+   NILL+GPTG 
Sbjct: 58  TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLIGPTGS 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 118 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 163



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GIV++DE DKI A+ SG+   ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 173 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 231

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            I+T +ILFI  GAF                                 + +P DL+    
Sbjct: 232 QIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFGADIKSKSEEKELLSLVQPEDLIKFGL 291

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     +LT+ ++ LI QYK L+  +GI L+FTED++  +A 
Sbjct: 292 IPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALREIAR 351

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+ ++E ++ D+ + A + +  K V+ID + V
Sbjct: 352 EAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVV 394


>gi|153824131|ref|ZP_01976798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|126518350|gb|EAZ75573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
          Length = 339

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 62/159 (38%), Gaps = 54/159 (33%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPAD---- 311
           +T  ILFI  GAF                                        P D    
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            L+PE  GR PV   L  L+++    IL + ++ L  QY
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQY 339


>gi|116512006|ref|YP_809222.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940173|sp|Q02Z22|CLPX_LACLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116107660|gb|ABJ72800.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 411

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 4/112 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64
           +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A     D EL   NILL+GPTG 
Sbjct: 61  TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVR 115
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +  NI R
Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIER 172



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 55/226 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 175 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 291 INTDHILFIASGAF--------------------HVSRPAD-----------------LL 313
           I+T +ILFI  GAF                    +  + +D                 L+
Sbjct: 235 IDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F + ++ A+A  
Sbjct: 295 PEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A+   +     GAR L++++E V+ DI F     +E T VI  E V
Sbjct: 355 AIERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAV 395


>gi|228993213|ref|ZP_04153134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           pseudomycoides DSM 12442]
 gi|228999262|ref|ZP_04158842.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock3-17]
 gi|229006809|ref|ZP_04164442.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock1-4]
 gi|228754431|gb|EEM03843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock1-4]
 gi|228760459|gb|EEM09425.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock3-17]
 gi|228766539|gb|EEM15181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           pseudomycoides DSM 12442]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404


>gi|161504374|ref|YP_001571486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189044147|sp|A9MM22|CLPX_SALAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160865721|gb|ABX22344.1| hypothetical protein SARI_02485 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRIHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399


>gi|118479638|ref|YP_896789.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis str. Al Hakam]
 gi|228917110|ref|ZP_04080668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929519|ref|ZP_04092538.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935791|ref|ZP_04098603.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229141213|ref|ZP_04269752.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST26]
 gi|229186714|ref|ZP_04313872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BGSC 6E1]
 gi|118418863|gb|ABK87282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           thuringiensis str. Al Hakam]
 gi|228596727|gb|EEK54389.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BGSC 6E1]
 gi|228642254|gb|EEK98546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST26]
 gi|228823848|gb|EEM69668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830098|gb|EEM75716.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842528|gb|EEM87618.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ ++ F
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLEVMF 404


>gi|51598864|ref|YP_073052.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia garinii
           PBi]
 gi|51573435|gb|AAU07460.1| ATP-dependent Clp protease, subunit X [Borrelia garinii PBi]
          Length = 435

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D ++++I QY  + K + + L F +D+++++ D A
Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172


>gi|53805231|ref|YP_113049.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|61211759|sp|Q60BE7|CLPX2_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2
 gi|53758992|gb|AAU93283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 428

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTGV 64
           P+EI   LD Y+IGQ+ AKR +++A+ N ++R   QQ  +   + EL   NILL+GPTG 
Sbjct: 68  PKEIKKVLDEYVIGQEKAKRILSVAVYNHYKRLRAQQTHSKKNEVELAKSNILLIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ ++
Sbjct: 128 GKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKIL 170



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311
           NT +ILFI  GAF               +   AD                          
Sbjct: 243 NTANILFICGGAFAGLEKIIRSRSEQGGIGFAADVKSKDDSRNVGEVLADVEAEDLIRYG 302

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L+++    ILT+ ++ L+ QY+ L + E   L+  +D++ A+A
Sbjct: 303 LIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIRDDALGAIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+T++E  L D  +
Sbjct: 363 RKAMARKT-----GARGLRTILEHTLLDTMY 388


>gi|153820475|ref|ZP_01973142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
 gi|126508982|gb|EAZ71576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
          Length = 366

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 7   TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 61  GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 108



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 121 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 180

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 181 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 240

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 241 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 300

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 301 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 341


>gi|90407419|ref|ZP_01215603.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
 gi|90311450|gb|EAS39551.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
          Length = 429

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   D+ +  EL   NILL+GPTG G
Sbjct: 70  TPHEIRANLDDYVIGQDQAKKVLSVAVYNHYKRLKY-GDVANGVELSKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  +ARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 KTLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLL 170



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFIQV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFSGLDTIIEQRVDTGQGIGFGATVKDEDSKASLSEIFKKVEPQDLTKY 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     ILT  ++ +  QY  L + E + L+F   ++  +
Sbjct: 303 GLIPEFIGRLPVVATLTELDEEALVEILTVPKNAITKQYSALFELEDVELEFRPKALKEM 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    +Q+   VV+D + ++
Sbjct: 363 AKKAMKRKT-----GARGLRSIVESVLLDTMYDLPSMQDVSKVVVDEKVIQ 408


>gi|61211447|sp|Q660R1|CLPX_BORGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 430

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D ++++I QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 397



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|289548352|ref|YP_003473340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermocrinis
           albus DSM 14484]
 gi|289181969|gb|ADC89213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermocrinis
           albus DSM 14484]
          Length = 412

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  +            ++ 
Sbjct: 177 GIVYIDEIDKI-ARKSGINPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFI 235

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            ++T  ILFI  GAF                                H+  P DL+    
Sbjct: 236 QVDTTDILFICGGAFVGLEDIIKRRLGKSTVGFEASIKKAHYEGNVLHLVEPDDLIHFGM 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L + D   IL + ++ L+ QY++L+  EG+ L FTE+++  +A 
Sbjct: 296 IPEFIGRLPVIAVLDELTEEDLVRILVEPKNALVKQYQKLLAMEGVELVFTEEALREIAA 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L+ +ME ++ D+ F    L+  K VV+D   VR
Sbjct: 356 EAIRRKT-----GARGLRAIMEEIMTDVMFEVPSLKGVKKVVVDGRTVR 399



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 4/104 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTG 63
           +P +I   LD+Y+IGQ+ AK+ +++A+ N ++R   +++  DL D E+   NILL+GPTG
Sbjct: 61  TPEKIKEILDQYVIGQEKAKKILSVAVYNHYKRIRAKEMGLDLNDVEVEKSNILLIGPTG 120

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT ++R LA++   PF   + T  TE GYVG +VE ++  L+
Sbjct: 121 SGKTLLARTLAKILDVPFAIADATSLTEAGYVGEDVENVLTRLL 164


>gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 428

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64
           PREI   LD Y+IGQ+ AK+A+++A+ N ++R +     P +   E+   NILL+GPTG 
Sbjct: 66  PREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 GKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH-------------------VSRPA---------------DLL---- 313
           +T ++LFI  GAF                    V RP                DLL    
Sbjct: 241 DTTNVLFICGGAFAGLEKLIESRTGQQGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGM 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   +  L++     ILT+  + L+ QY+ L + +G+ L+FT D+++A+A+
Sbjct: 301 IPEFVGRLPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAE 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +     +   GAR L+ ++E VL  + +
Sbjct: 361 QGI-----IRGTGARGLRAIIEEVLLSVMY 385


>gi|229817801|ref|ZP_04448083.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM
           20098]
 gi|229785590|gb|EEP21704.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM
           20098]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 19/121 (15%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPAD--------LRD- 49
           P +I   LDRY+IGQQ AKRA+++A+ N ++R          Q  PA         LRD 
Sbjct: 65  PMQINDYLDRYVIGQQTAKRALSVAVYNHYKRVNMELREAASQVAPAGGEDAASDPLRDV 124

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 125 QVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQA 184

Query: 110 A 110
           A
Sbjct: 185 A 185



 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 60/230 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS-------- 290
           +GIV++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S    GS        
Sbjct: 194 HGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPAEGSRKHREQET 252

Query: 291 --INTDHILFIASGAF----------------------HVSRPAD--------------- 311
             INT  ILFI  GAF                      H     D               
Sbjct: 253 IQINTRGILFICGGAFVGLTDIIKNRLGARESGFGAKWHDHEVPDGELLQQVCADDLAEF 312

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            LLPE  GR PV   L+ L + D   +LT   + L+ QY +L   +G+ L FT+D++ A+
Sbjct: 313 GLLPEFIGRLPVVSVLQELKEDDLAAVLTQPSNALVKQYMKLFAVDGVTLTFTDDAVAAI 372

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A  A+   +     GAR L++++ER L+D  F    +     V++D + V
Sbjct: 373 ARTAIRQGT-----GARGLRSIIERTLQDTMFQLPSMNHVVEVIVDGDAV 417


>gi|260583669|ref|ZP_05851417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella elegans ATCC 700633]
 gi|260158295|gb|EEW93363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella elegans ATCC 700633]
          Length = 412

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ++AK+A+A+A+ N ++R   L  D   EL   NI L+GPTG GKT
Sbjct: 62  PQEIREILNDYVIGQENAKKALAVAVYNHYKRINHLVEDDGVELQKSNICLIGPTGSGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LARL   PF   + T  TE GYVG +VE I+  L+
Sbjct: 122 YLAQSLARLLNVPFAIADATTLTEAGYVGEDVENILLKLL 161



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 174 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQI 233

Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADL-----LP 314
           +T  ILFI  GAF                           H S      P DL     +P
Sbjct: 234 DTTDILFIVGGAFDGIETIVKERLGAKVIGFGSSNKNFSEHESLMQMIIPEDLQKFGLIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L + D   ILT+ ++ L+ QY++L   + + L+F+++++DA+A  A
Sbjct: 294 EFIGRLPIIAALEKLEQKDLVSILTEPKNALVKQYQKLFLMDEVELEFSQEALDAIAAKA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +   +     GAR L++++E V+ D+ F      E + VI
Sbjct: 354 IERKT-----GARGLRSIIESVMMDLMFEIPSRDEVSKVI 388


>gi|170727452|ref|YP_001761478.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella woodyi
           ATCC 51908]
 gi|238688691|sp|B1KLT6|CLPX_SHEWM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169812799|gb|ACA87383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           woodyi ATCC 51908]
          Length = 426

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLK-NAGPKDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 62/232 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILF+  GAF           H                            P DL   
Sbjct: 240 DTSKILFVCGGAFSGLEKVIEQRSHTGTGIGFGAQVKGEDDKATISDTLMQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+ +    IL++ ++ L  Q+  L + E + L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNALTKQFAALFEMEDVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
           A     L +     GAR L++++E +L DI +   ++D   K VVID   V+
Sbjct: 360 A-----LKAKTRKTGARGLRSIVEGILLDIMYDLPSTDNVAK-VVIDESVVK 405


>gi|216264379|ref|ZP_03436371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 156a]
 gi|215980852|gb|EEC21659.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 156a]
          Length = 430

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|226321917|ref|ZP_03797443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi Bol26]
 gi|226233106|gb|EEH31859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi Bol26]
          Length = 430

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|90410783|ref|ZP_01218798.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
 gi|90328414|gb|EAS44712.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
          Length = 426

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGADVRSKSEERTISDLFKKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDQDALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           A  A++  +     GAR L++++E VL D  +   S +    VVID
Sbjct: 361 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVID 401


>gi|146282419|ref|YP_001172572.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|145570624|gb|ABP79730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
          Length = 441

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  Q       EL   NILL+GPTG GK
Sbjct: 82  APKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 142 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 182



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 195 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 254

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 255 DTRNILFICGGAFAGLEKVIQSRSTQGGIGFNAEVRSKDPGKKIGEALRAVEPDDLVKFG 314

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ A+A
Sbjct: 315 LIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEFRPDALKAVA 374

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E VL D  +     ++   VVID
Sbjct: 375 HRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 414


>gi|327183368|gb|AEA31815.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1118]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  LN  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|291515534|emb|CBK64744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Alistipes
           shahii WAL 8301]
          Length = 422

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 55/229 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K+  +
Sbjct: 187 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 246

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                    P DL     +P
Sbjct: 247 DTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRLNADPIDRSNLMQYVTPQDLKSFGLIP 306

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV  +++ L ++  R ILT+ ++ ++ QYK L + +G+ L F +D++D + D A
Sbjct: 307 ELVGRLPVLTYMQPLERAALRSILTEPKNAIVKQYKRLFELDGVKLAFDDDALDYIVDKA 366

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           V        +GAR L+++ E ++ D  F       +   +   Y +  I
Sbjct: 367 VEFK-----LGARGLRSICEAIMMDTMFDIPSTDARKFTVTLPYAKKKI 410



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 1/120 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           +K+     P +I   LD+Y+IGQ  AKR +++A+ N ++R    P +   E+   NI+LV
Sbjct: 67  LKMEELLKPAQIKEFLDQYVIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ R
Sbjct: 127 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 186


>gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           nodulans ORS 2060]
 gi|254763854|sp|B8IN27|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium nodulans ORS 2060]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLERIISARGKGTSIGFGATVQAPDDRRTGEIFRNVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F E+++  +A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L +  +    L   + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVV 400


>gi|119510657|ref|ZP_01629786.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena
           CCY9414]
 gi|119464708|gb|EAW45616.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena
           CCY9414]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 9/126 (7%)

Query: 3   LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMP 53
           L+FN    PREI + LD ++IGQ +AK+ +++A+ N ++R  +        AD   EL  
Sbjct: 74  LSFNQIPKPREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGKNEADDAVELQK 133

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   
Sbjct: 134 SNILLIGPTGCGKTLLAQTLATILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLD 193

Query: 114 VRESRR 119
           V E++R
Sbjct: 194 VEEAQR 199



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 200 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 259

Query: 292 NTDHILFIASGAF----------------HVSRPADL----------------------- 312
           +T +ILF+  GAF                   +P DL                       
Sbjct: 260 DTSNILFVCGGAFVGLDKVVDQRSGKKSMGFVQPGDLQSKEKRTADTLRYLEPDDLVKFG 319

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   +  L++     ILT   S L+ QY++L+  + + LDF +D++ A+A
Sbjct: 320 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLNMDNVQLDFKQDALRAIA 379

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 380 QEAYRRKT-----GARALRGIVEELMLDVMY 405


>gi|121593622|ref|YP_985518.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax sp.
           JS42]
 gi|222110342|ref|YP_002552606.1| ATP-dependent protease ATP-binding subunit clpx [Acidovorax ebreus
           TPSY]
 gi|166214752|sp|A1W5B7|CLPX_ACISJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763845|sp|B9MG15|CLPX_ACIET RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120605702|gb|ABM41442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           sp. JS42]
 gi|221729786|gb|ACM32606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           ebreus TPSY]
          Length = 421

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R   +        EL   NILL+GPTG 
Sbjct: 67  TPAEIKTNLDHYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDEVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR    PF+  + T  TE GYVG +VE I++ L+
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLL 169



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 59/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVRSKKQRSLTEVFQDIEPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+    ++ ++A 
Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKSIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
            A+   +     GAR L++++E+ L    F   ++   EK VV +A
Sbjct: 362 KAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEA 402


>gi|254785701|ref|YP_003073130.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter
           turnerae T7901]
 gi|237686761|gb|ACR14025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Teredinibacter turnerae T7901]
          Length = 431

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 7/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW------RRQQLP-ADLRDELMPKNILLVG 60
           +P  I   LD Y+IGQ+ AK  +AIA+ N +      RR+ L  +D   EL   N+L+VG
Sbjct: 60  TPEAIKKHLDDYVIGQEQAKETLAIAVYNHYLRLMNTRRETLEESDSNIELDKSNVLMVG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           P+G GKT I R LA++ G PF+  + T  T+ GYVG +V+ II  L+D A   V +++
Sbjct: 120 PSGTGKTLIVRSLAKILGVPFVSADATSLTQAGYVGDDVDSIIHRLLDAAEGDVNQAQ 177



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 57/218 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS-TKYGS--------- 290
            +GIV++DE DKI  R  G      VS EGVQ+ LL LVEG+    +K G          
Sbjct: 177 QWGIVYIDEIDKIARRGGGTTSVRDVSGEGVQQALLKLVEGTEQKVSKSGRRRENSEEVI 236

Query: 291 INTDHILFIASGAF--------HVSRPAD------------------------------- 311
           ++T +ILFI  GAF        +  +P D                               
Sbjct: 237 VDTRNILFIVGGAFPGLEELICNRVKPRDTSIGFHSRTENAKPDVNELLENLLPDDLQGF 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GRFP+   L+ L+      ILT+  + L+ Q+++L   +G  L+ T+D++  +
Sbjct: 297 GLIPEFIGRFPITTFLQELDVEALLKILTEPRNALVKQFRQLFAYQGKTLEMTDDALTFI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A+ AV+ N+     GAR L++V+E  L    F    LQ
Sbjct: 357 AEEAVSRNT-----GARGLRSVLEAALHKTMFEMPSLQ 389


>gi|228987724|ref|ZP_04147835.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771998|gb|EEM20453.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404


>gi|149181756|ref|ZP_01860247.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1]
 gi|148850497|gb|EDL64656.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1]
          Length = 424

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PKEIREILDEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 64/240 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      V R                             P DLL    
Sbjct: 236 DTSNILFICGGAFDGIEQIVKRRLGQKVIGFGSDPKTVNVDNDKSLLAKVVPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY+++++ + + L+F ED++  +A+
Sbjct: 296 IPEFIGRLPVISSLTPLDEDALVEILTKPKNALVKQYQKMLELDQVELEFEEDALREIAN 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV----VIDAEYVRLHIGD 425
            A+   +     GAR L++++E ++ ++ F   S  D+++  +    V D+E  +L + D
Sbjct: 356 KAIERKT-----GARGLRSIIESIMLEVMFDLPSREDIKKCIITPGTVTDSEAPKLLLED 410


>gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           sp. 4-46]
 gi|238688059|sp|B0UD19|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium sp. 4-46]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTTNILFICGGAFAGLERIISARGKGTSIGFGATVQAPDDRRTGEIFRAVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E + L F E+++  +A 
Sbjct: 298 IPEFVGRLPVLATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L +  +    L   + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVV 400


>gi|15594957|ref|NP_212746.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia
           burgdorferi B31]
 gi|195941432|ref|ZP_03086814.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi
           80a]
 gi|218249658|ref|YP_002375117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi ZS7]
 gi|221218047|ref|ZP_03589513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 72a]
 gi|223889057|ref|ZP_03623647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 64b]
 gi|224533641|ref|ZP_03674230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi CA-11.2a]
 gi|225549555|ref|ZP_03770521.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 118a]
 gi|6225164|sp|O51557|CLPX_BORBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2688531|gb|AAC66963.1| ATP-dependent Clp protease, subunit X (clpX) [Borrelia burgdorferi
           B31]
 gi|218164846|gb|ACK74907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi ZS7]
 gi|221191995|gb|EEE18216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 72a]
 gi|223885483|gb|EEF56583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 64b]
 gi|224513314|gb|EEF83676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi CA-11.2a]
 gi|225369832|gb|EEG99279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 118a]
 gi|312148054|gb|ADQ30713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi JD1]
          Length = 430

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|326795824|ref|YP_004313644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
 gi|326546588|gb|ADZ91808.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
          Length = 427

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P ++   LD Y+IGQ+ AK+ +A+A+ N ++R   Q   D   EL   NILL+GPTG G
Sbjct: 70  TPLKLSKSLDDYVIGQERAKKVLAVAVYNHYKRLRHQSSKDSPVELGKSNILLIGPTGSG 129

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 183



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H     DL    
Sbjct: 244 DTSNILFICGGAFAGLERVISDRTEKSSIGFSATVKSKDEGRTFSEAIHQVETEDLVKFG 303

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     IL++ ++ L  QY+ L   EG+ L+FT++S+   A
Sbjct: 304 LIPEFVGRLPVVATLSELDEEALMTILSEPKNALTKQYQHLFDLEGVELEFTDESLREAA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
            +A+   +     GAR L++++E  L D  +   +  +   +V+D   VR
Sbjct: 364 HLALERKT-----GARGLRSILESALLDCMYELPNRSDVVKIVMDGASVR 408


>gi|187918472|ref|YP_001884035.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia hermsii
           DAH]
 gi|119861320|gb|AAX17115.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia
           hermsii DAH]
          Length = 433

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R  +    +   EL   N+LLVGPTG G
Sbjct: 68  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFRGNKKESGVELEKSNVLLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++++LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLLAKKLADEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          I
Sbjct: 182 GIVYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANIPPKGGRKHPYEETIEI 241

Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314
           NT  ILFI  GAF                         SR  +              L+P
Sbjct: 242 NTQDILFICGGAFVGLENIIKRRINKSSIGFSSVGKQDSRENNSLKYLEMEDLVKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ L K D   IL + E++++ QY  + K + + L F  D+++A+A+ A
Sbjct: 302 EFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYYHMFKMDNVELVFERDALNAIAEEA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F   S  Q K V++  E V
Sbjct: 362 MLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 402


>gi|325286840|ref|YP_004262630.1| Sigma 54 interacting domain-containing protein [Cellulophaga lytica
           DSM 7489]
 gi|324322294|gb|ADY29759.1| Sigma 54 interacting domain protein [Cellulophaga lytica DSM 7489]
          Length = 411

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAFH-VSR--------------------------------PADL-----L 313
           NT++ILFIA GAF  + R                                P DL     +
Sbjct: 235 NTENILFIAGGAFDGIERIITKRLNMQAVGYSASKLDDNVDNTNILQYIIPKDLKEFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L++   R ILT+ ++ +I QY++L   + I    T+ ++D +   
Sbjct: 295 PEIIGRLPVLTHMNPLDEKTLRAILTEPKNAIIKQYEKLFAMDDIKFSITDKALDFVVSK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +  D  F     Q+K   +  EY
Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFELPSSQDKEFKVTQEY 394



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD +IIGQ+  K+ +++A+ N ++R   P+   D  E+   NI++ G TG GK
Sbjct: 62  PMEIKAFLDTFIIGQERTKKVMSVAVYNHYKRLLQPSSADDDVEIQKSNIVMAGQTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A++   P   V+ T  TE GYVG +VE ++  L+  A
Sbjct: 122 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESLLTRLLQAA 165


>gi|315038089|ref|YP_004031657.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325956542|ref|YP_004291954.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
 gi|312276222|gb|ADQ58862.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325333107|gb|ADZ07015.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  LN  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|297538720|ref|YP_003674489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           sp. 301]
 gi|297258067|gb|ADI29912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           sp. 301]
          Length = 426

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 8/119 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P+EI   LD+Y+IGQ  AK+ +A+A+ N ++R     +L D       E+   NILL+G
Sbjct: 65  TPQEICKILDQYVIGQTHAKKNLAVAVYNHYKRLG-HNNLSDGGQKDEVEISKSNILLIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+      V +++R
Sbjct: 124 PTGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAKR 182



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 110/238 (46%), Gaps = 62/238 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEVDKISRKSENASITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQL 242

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313
           +T +ILFI  GAF     V R                               P DL+   
Sbjct: 243 DTTNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKGKNDIRQVGAVLRDVEPEDLIKFG 302

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+SL+++    ILT+ ++ L  QY +L K EG+ L+F E ++  +A
Sbjct: 303 LIPEFIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVELEFRESALLLIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428
             A+   +     GAR L++++E  L DI +    L+    VV+D   VR   GD P+
Sbjct: 363 KKALERKT-----GARGLRSILEHSLLDIMYELPSLENLSKVVVDEGVVR---GDAPA 412


>gi|254448887|ref|ZP_05062343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
 gi|198261577|gb|EDY85866.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
          Length = 426

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 5/115 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R  + +  R+   EL   NILL+GPTG 
Sbjct: 67  TPHEIKQRLDDYVIGQERAKKVLSVAVYNHYKR--MESSQRNDEIELSKSNILLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H   P DL    
Sbjct: 240 DTSNILFICGGAFAGLDKVIRERSEKGGIGFAAEVKTEEDDLAIGQLLHEVEPEDLVKYG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L +     ILT  ++ +I Q+K L + EG+ ++F + ++ A+A
Sbjct: 300 LIPEFIGRLPVVATLEELGEEALIEILTQPKNAIIKQFKYLFEMEGVEIEFLDAALSAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+   +     GAR L+T++E +L D  +    ++    VVID   +R
Sbjct: 360 QKAMERKT-----GARGLRTILENILLDTMYEVPSMESVSKVVIDDAVIR 404


>gi|161507349|ref|YP_001577303.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus DPC 4571]
 gi|172048267|sp|A8YUS4|CLPX_LACH4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160348338|gb|ABX27012.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
          Length = 424

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDFDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L +L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|46577697|sp|P70730|CLPX_AZOBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|5002358|gb|AAD37436.1|AF150957_3 heat-shock protein ClpX [Azospirillum brasilense]
          Length = 422

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYV  +VE II  L+  A
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVREDVENIILKLLQAA 168



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRGPDERSTGDILREVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+F++D++  ++ 
Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISH 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L   ++++++ E V
Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 400


>gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
 gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
          Length = 423

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R     +   D+  EL   NILL+GPTG
Sbjct: 65  TPKEICKVLDDYVIGQFHAKRVLSVAVHNHYKRLNHATKHAGDV--ELAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 123 SGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 178



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V+ P D                   L
Sbjct: 239 DTSNILFICGGAFAGLDKIISSRGKGTSIGFSAVVAAPEDRKPGEVFREVEPEDLLKYGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++   + IL + ++ L+ QY+ L + E + L   E+++ A+A 
Sbjct: 299 IPEFIGRLPVIATLGDLDEEALKKILAEPKNALVKQYQRLFEMENVELTIHEEALGAIAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 359 KAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVV 401


>gi|302534404|ref|ZP_07286746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. C]
 gi|302443299|gb|EFL15115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. C]
          Length = 428

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  RD   EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VVI A+ VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408


>gi|148977889|ref|ZP_01814442.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145962835|gb|EDK28107.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 426

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVETGSGIGFGAEVRSKDETKTIGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A++  +     GAR L++++E VL +  +   S++D+ +  VVID
Sbjct: 361 AKKAMSRKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401


>gi|329889320|ref|ZP_08267663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           diminuta ATCC 11568]
 gi|328844621|gb|EGF94185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           diminuta ATCC 11568]
          Length = 422

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 238 DTANILFIVGGAFAGLEKVISARGEGASIGFGAKVKEIDERRTGEILKQVEPDDLMRFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QYK L + E + L FT+D++ A+A 
Sbjct: 298 IPEFIGRLPVLATLEDLDEVALIKILTEPKNALVKQYKRLFEMENVTLTFTDDALSAVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E VL +  F
Sbjct: 358 KAITRKT-----GARGLRSILEGVLLETMF 382


>gi|229158089|ref|ZP_04286159.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 4342]
 gi|228625408|gb|EEK82165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 4342]
          Length = 444

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404


>gi|317492908|ref|ZP_07951332.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919030|gb|EFV40365.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 423

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGATVKALSEKATEGELLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLRELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L +  +    ++  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSMENVEKVVV 398


>gi|254382768|ref|ZP_04998125.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
 gi|194341670|gb|EDX22636.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
          Length = 428

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  RD   EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VVI A+ VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408


>gi|163791244|ref|ZP_02185660.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
 gi|159873514|gb|EDP67602.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
          Length = 415

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P+EI   L+ Y+IGQ+ AK+++++A+ N ++R  Q+  D +D  EL   NI L+GPTG G
Sbjct: 64  PQEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQIGGDEKDGVELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAA 168



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 178 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 237

Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314
           +T +ILFI  GAF                                    P DLL     P
Sbjct: 238 DTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKIEEGQSVMQQIIPEDLLKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L + D   ILT  ++ L  QYK+L+  + + L+F EDS+  +A  A
Sbjct: 298 EFIGRLPVMAALEKLTEDDLVHILTKPKNALAKQYKKLLGLDDVELEFEEDSLTEIAKKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +  N+     GAR L++++E ++ +I F
Sbjct: 358 IERNT-----GARGLRSIIESIMLEIMF 380


>gi|86148884|ref|ZP_01067135.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218710173|ref|YP_002417794.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio splendidus
           LGP32]
 gi|254763873|sp|B7VHZ9|CLPX_VIBSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|85833327|gb|EAQ51534.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218323192|emb|CAV19369.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           splendidus LGP32]
          Length = 426

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 101/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVETGSGIGFGAEVRSKDETKTIGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+N  +     GAR L++++E VL +  +   S++D+ +  VVID
Sbjct: 361 AKKAMNRKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401


>gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
 gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
          Length = 431

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILL GPTG GK
Sbjct: 75  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHSSKNNDVELAKSNILLAGPTGCGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 135 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 187



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 188 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 247

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   V  P DLL    
Sbjct: 248 DTTNILFICGGAFAGLDKIIADRGTQTSIGFKANVQAPEDRRVGELFSVMEPEDLLKFGL 307

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL + ++ L+ QY+ L + E + L F E+++ A+A 
Sbjct: 308 IPEFVGRLPVIATLEDLDEDALVTILVEPKNALVKQYQRLFEMEQVELTFHEEALRAIAR 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +    L+  K VVI  E V
Sbjct: 368 KAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVV 410


>gi|301060526|ref|ZP_07201366.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
 gi|300445369|gb|EFK09294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
          Length = 415

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD+Y+I Q  AK+ +++A+ N ++R     D+   E+   NILL+GPTG G
Sbjct: 62  LKPVEIKETLDQYVIEQDKAKKVLSVAVHNHYKRINTKVDMEGVEIEKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II +LV +A
Sbjct: 122 KTLLAQTLARILKVPFTIADATTLTEAGYVGEDVENIILNLVQMA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 176 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTLANVPPKGGRKHPQQDFVKV 235

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  G F+                                  + +P DL+    
Sbjct: 236 DTSNILFICGGTFNGLDRIIRSRIGSKLMGFEADIHGKGDVDINEIMGLVQPEDLIKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+      ILT+ ++ L  QYK+L + E + L FT+  ++A+A+
Sbjct: 296 IPEFIGRIPIVATLNELSLEALVRILTEPKNALTKQYKKLFELEDVELKFTDGVLNAVAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   S     GAR L+ ++E ++ +I +    + E +  VI+ E V
Sbjct: 356 AALKRKS-----GARGLRAILETLMLEIMYDIPSIPEIRECVINEEVV 398


>gi|319788748|ref|YP_004090063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
 gi|315450615|gb|ADU24177.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
          Length = 423

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 2/111 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQ DAK A+++A+ N ++R     D  D  E+   N+LL+GPTG GK
Sbjct: 73  PSEIKAVLDEYVIGQDDAKIALSVAVYNHYKRILTLEDDTDDVEIQKSNVLLLGPTGTGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LARL   PF   + T  TE GYVG +VE ++  L+  A   V E+
Sbjct: 133 TLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEA 183



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 56/229 (24%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG--------- 289
           ++GI+++DE DKI  +     I   VS EGVQ+ LL +VEG  S+V  + G         
Sbjct: 184 SHGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFI 243

Query: 290 SINTDHILFIASGAFHVSR--------------------------------PADLL---- 313
            I+T +ILFI  GAF                                    P DL+    
Sbjct: 244 QIDTKNILFICGGAFDGLEAVIKKRTDSSSMGFGGKVKDKTSDYNILKKVVPHDLVKFGI 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ +++LI QY +L + + I  + T +++  +A 
Sbjct: 304 VPELVGRLPVITVLDELDEPALCRILTEPKNSLIKQYTKLFELDNIEFEVTPEALTEIAK 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           V +   +     GAR L+ V+ER+L  + F A SD     + I AE V+
Sbjct: 364 VTIEQKT-----GARGLRAVVERILTQLMFDAPSDDTISGIRITAECVK 407


>gi|218262312|ref|ZP_03476826.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223463|gb|EEC96113.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii
           DSM 18315]
          Length = 409

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 233

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 234 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYAANENTAKVDRSNLLKYITPTDLKSFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++S  R ILT+ ++++I QY +L   + I L F ED  + + D 
Sbjct: 294 PEIIGRLPILTYLNPLDRSTLRNILTEPKNSIIKQYIKLFAMDDIKLTFDEDVFEFIVDK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S     +K + +  EY +
Sbjct: 354 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSANKKKLHVTLEYAK 395



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++A+ N ++R  Q++ +D   E+   NI++VG TG GK
Sbjct: 62  PEDIKAFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSD-DVEIEKSNIIMVGATGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 121 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 173


>gi|153813885|ref|ZP_01966553.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756]
 gi|145848281|gb|EDK25199.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756]
          Length = 431

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+A+A+A+ N ++R  + +D  D  E+   N+L++GPTG G
Sbjct: 76  APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 133

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V      E  EQ
Sbjct: 134 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 187

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             I  +E  +D  + K  TSN R+V  + ++ G
Sbjct: 188 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 217



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 188 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 247

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
            +ILFI +GAF                                    V+    R   ++P
Sbjct: 248 KNILFICAGAFPDLEDIIKERLTKKTSMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 307

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + +++ +A+ A
Sbjct: 308 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 367

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L+ ++E  + DI +    D     V I  EY+
Sbjct: 368 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 408


>gi|313884248|ref|ZP_07818014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620695|gb|EFR32118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 415

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
             P EI++ LD+Y++GQ+ AK+ +++A+ N ++R     D ++E    L   NI L+GPT
Sbjct: 61  LKPNEIMTILDQYVVGQKQAKKNLSVAVYNHYKRIMHNQDKQEEDEVDLQKSNIALIGPT 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE ++  LV  A
Sbjct: 121 GSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENVLLKLVQAA 168



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  +  K G          +
Sbjct: 178 GIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKILEGTTANIPPKGGRKHPNQDFIQM 237

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T  ILFI  GAF                                  + P DLL     P
Sbjct: 238 DTSQILFIVGGAFDGIETIIKERLGSKVIGFGVSNGKFDESKSLIQHATPEDLLKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT  ++ L+ QY++L   + + L+F ED++ A+A +A
Sbjct: 298 EFIGRIPIMAVLDKLTEDDLVEILTKPKNALVKQYQKLFDIDHVKLEFKEDALRAIAHLA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E V+ D+ F
Sbjct: 358 IERGT-----GARGLRSIIESVMLDVMF 380


>gi|302337809|ref|YP_003803015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634994|gb|ADK80421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
          Length = 413

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y++GQ+ AK+ +++A+ N ++R      + D  E+   N+LL+GPTG G
Sbjct: 62  TPQEIHTYLDEYVVGQETAKKVLSVAVYNHYKRIAQRGKIEDDIEIEKANVLLLGPTGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A N +  + R
Sbjct: 122 KTLLAKTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 175



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 58/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKISRKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIRI 235

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          V++                         P DL     
Sbjct: 236 DTTNILFIVGGAFVGLDRIIEQRVAQHPLGFGADVMASSEKDLSALYSKLHPDDLVKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+ V L  L+K +   I+++ +++++ QY+  +K + + L F   +++A+A+
Sbjct: 296 IPEFIGRLPIHVALSDLSKEELMRIVSEPKNSILRQYQASLKLDEVNLVFQPGAVEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVI 414
            A+   +     GAR L+ ++E V+ DI +    ++  K VV+
Sbjct: 356 KALEQKT-----GARGLRAIVENVMLDIMYEIPSIEGAKQVVV 393


>gi|253575672|ref|ZP_04853008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251845010|gb|EES73022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 418

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NILL+GPTG GKT
Sbjct: 64  PKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   +  P DLL    
Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNAANDGQKELKPGEYLSMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL++ ++ L+ QY++L++ + + L F   +++A+A 
Sbjct: 296 IPEFVGRLPVISTLEPLDEKTLVRILSEPKNALVKQYQKLLELDNVNLQFEPKALEAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E ++ D+ +      + T  +  E V L 
Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLDVMYEVPSRDDITDCVITEKVVLE 400


>gi|193213134|ref|YP_001999087.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobaculum
           parvum NCIB 8327]
 gi|238692649|sp|B3QPN4|CLPX_CHLP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193086611|gb|ACF11887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobaculum
           parvum NCIB 8327]
          Length = 439

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EGS   V  K G         
Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 255

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 256 NINTKNILFICGGAFEGLDKIIARRVSKSSMGFGSKVKDKQTGYDPEILKLVTQDDLHEY 315

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+ S  R IL + ++ L+ QYK L + +G+ L+FT++++D +
Sbjct: 316 GLIPEFIGRLPVMSALDPLDASALRNILVEPKNALVKQYKRLFEMDGVELEFTDEALDKV 375

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++A+   +     GAR L++V+E V+ DI F    L++ +  +I +E +
Sbjct: 376 VEIAIERGT-----GARALRSVLENVMIDIMFELPTLKDVQKCIITSETI 420



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           SP  I   LD+Y+IGQ+ AK+++++A+ N ++R    +  A+   E+   NILL+GPTG 
Sbjct: 83  SPVNIKESLDQYVIGQERAKKSLSVAVYNHYKRIDAHEWTAEDEVEIEKSNILLIGPTGT 142

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAER 197


>gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 436

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 65  LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 57/213 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  S            ++  
Sbjct: 177 YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQ 236

Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312
           I+T +ILFI  GAF                            +V        P DL    
Sbjct: 237 IDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKFG 296

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L +L+K+    ILT+ +++L+ QY+ L   +GI L+F  ++++A+A
Sbjct: 297 LIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           D ++   +     GAR L+ +ME  + D+ ++A
Sbjct: 357 DKSMERKT-----GARGLRAIMENSMMDLMYTA 384


>gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 429

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P E+ + LD+Y+IGQ  AK+ +++A+ N +RR    P+D + EL   N+LLVGPTG GKT
Sbjct: 76  PDEMKAFLDQYVIGQDQAKKVLSVAVYNHYRRITAGPSDDQVELPKSNVLLVGPTGSGKT 135

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 136 LLAQTLARLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDVKAAER 187



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  K G          +
Sbjct: 188 GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLRILEGTVSNVPPKGGRKHPNQDFIQV 247

Query: 292 NTDHILFIASGAFHVSRP----------------------------------AD------ 311
           +T +ILFI  GAF    P                                  AD      
Sbjct: 248 DTKNILFICGGAFDGLEPIIARRTRKKVIGFGGDIASAKDLEKRNSLYRELVADDFITYG 307

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L SL++     IL + ++ L+ QY+ + + + + L+FT ++I A+A
Sbjct: 308 FIPEFVGRLPVIVPLDSLDEEALVRILQEPKNALVRQYQRIFEMDRVNLEFTPEAIRAIA 367

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+++ME ++ D+ +
Sbjct: 368 RKAMERKT-----GARALRSIMEGIMLDLMY 393


>gi|302382858|ref|YP_003818681.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193486|gb|ADL01058.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 420

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312
           +T +ILFI  GAF        +R A                                  L
Sbjct: 238 DTANILFIVGGAFAGLEKVIAARGAGASIGFGAKVKEVDERRTGDILKGVEPDDLMRFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     ILT+ ++ L+ QYK L + E + L FT+D+++A+A 
Sbjct: 298 IPEFIGRLPVLATLEDLDEKALVTILTEPKNALVKQYKRLFEMENVGLTFTDDALNAVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L +  F
Sbjct: 358 KAITRKT-----GARGLRSILEGILLETMF 382


>gi|296129242|ref|YP_003636492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           flavigena DSM 20109]
 gi|296021057|gb|ADG74293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           flavigena DSM 20109]
          Length = 425

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRD-ELMPKNILLVGP 61
           P+EI   L++YI+GQ+ AKR++A+A+ N ++R Q      +PA     E+   NILL+GP
Sbjct: 64  PKEIFDFLEQYIVGQEPAKRSLAVAVYNHYKRIQAGEGARVPAGEEPVEIAKSNILLIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR-------------------------PADLL-----PE 315
           +T ++LFI +GAF        SR                         P DLL     PE
Sbjct: 242 DTTNVLFIVAGAFAGLDEIITSRAGRRGIGFGSPLHSADDTDVYGEVMPEDLLKFGLIPE 301

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR P+   +  L++     ILT+  + LI QY+ + + +G+ L+F E +++A+A+ A+
Sbjct: 302 FIGRVPIITTVSPLDRVALVRILTEPRNALIKQYQRMFQIDGVELEFEEAAVEAVAEQAL 361

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
            L  T    GAR L+ ++E VL+ + F
Sbjct: 362 -LRGT----GARGLRAILEEVLQQVMF 383


>gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium HTCC2083]
 gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 377

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      +   EL   NILL+GPTG GK
Sbjct: 21  TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKNSEIELAKSNILLMGPTGCGK 80

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++R
Sbjct: 81  TLLAQTLARTLDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVEKAQR 133



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 134 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 193

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 194 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRDNDDRGIGEIFTELEPEDLLRFGL 253

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FTED++ A+A 
Sbjct: 254 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELESTQLTFTEDALSAIAK 313

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    +   T VV++ E V
Sbjct: 314 RAIERKT-----GARGLRSILEEILLDTMFDLPGMDTVTEVVVNDEAV 356


>gi|84387736|ref|ZP_00990752.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
 gi|84377419|gb|EAP94286.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
          Length = 426

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFSGLDKVIEQRVEKGSSIGFGAEVRSKDEAKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALVQILCEPKNALTKQYAALFEIEETELEFRDDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   S++D+ +  VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401


>gi|189502524|ref|YP_001958241.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Amoebophilus asiaticus 5a2]
 gi|189497965|gb|ACE06512.1| hypothetical protein Aasi_1179 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 403

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K   +
Sbjct: 170 GIVYIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTIVNVPPQGGRKHPDQKMIPV 229

Query: 292 NTDHILFIASGAF------------------------------------HVS----RPAD 311
           NT++ILFI  GAF                                    HVS    R   
Sbjct: 230 NTENILFICGGAFEGMDKIISKRLNAGTLGFDIAQSRSQGTRETSNLLKHVSSNDLRVYG 289

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+  +L  ++    + ILT+ +++LI QY +L   + + L  TED++D + 
Sbjct: 290 LIPELIGRLPIISYLNPIDAKALKSILTEPKNSLIKQYTKLFAMDNVQLTITEDALDYMV 349

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV-VIDAEY 418
           + A++L      +GAR L+++ E V+ D  F  S  +E  V +ID  Y
Sbjct: 350 EQALSLK-----LGARGLRSICEAVIMDAMFELSSEKEAAVLLIDKNY 392



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGV 64
            +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R +   +  D +     NILL+G TG 
Sbjct: 55  LTPKEIKAYLDQYVIGQDVAKKTLAVAVYNHYKRLRQSYEEEDGITIEKSNILLLGETGT 114

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 115 GKTYLARTLAKLLHVPFCMADATVLTEAGYVGEDVESILTRLLQAA 160


>gi|47566662|ref|ZP_00237484.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9241]
 gi|47556692|gb|EAL15024.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9241]
          Length = 419

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379


>gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
 gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
          Length = 426

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401


>gi|320102131|ref|YP_004177722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
 gi|319749413|gb|ADV61173.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
          Length = 478

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 6/107 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +PREI ++LD+Y+IGQ  AK+ +++A+ N ++R    ++   D+  EL   NILL+GPTG
Sbjct: 88  NPREIKAQLDQYVIGQDRAKKVLSVAVHNHYKRLVHDEEPETDV--ELDKSNILLIGPTG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 146 SGKTLLARTLARVLNVPFAIGDATTLTEAGYVGEDVENILLKLLHAA 192



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 100/242 (41%), Gaps = 63/242 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI        I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 202 GIVYIDEIDKIGKTSHNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQM 261

Query: 292 NTDHILFIASGAF---------HVSRP-------------------ADLL---------- 313
           +T +ILFI  G F          + R                    ADLL          
Sbjct: 262 DTTNILFICGGTFVGLDNIIARRIGRKTIGFGGAMGDSDSAREKNLADLLNQVTSDDVLE 321

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L  L+      ILT+  + L+ QY+ L + EG  L F  +++  
Sbjct: 322 FGLIPEFIGRLPVICPLMPLDVEALVQILTEPRNALVKQYQRLFEMEGAKLQFDSEALRE 381

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA---SDLQEKTVVIDAEYVRLHIGDF 426
           +A +A        D GAR L++++E  + DI F      D  EK  ++    VR  +  F
Sbjct: 382 IAILAKER-----DTGARGLRSIIEDTMLDIMFELPERPDKTEKIFLVTPAVVRREVSLF 436

Query: 427 PS 428
            S
Sbjct: 437 DS 438


>gi|222099516|ref|YP_002534084.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
 gi|221571906|gb|ACM22718.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
          Length = 406

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AKR +++A+ N ++R        D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKRILSVAVYNHYKRVFSNLSSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 59/219 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFI  GAF                                   HV+ P DL  
Sbjct: 228 KVDTRNILFIVGGAFDGLEEIIKRRLQSTTMGFGAEIKSKKEMRIGEILRHVT-PDDLVQ 286

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L  L + D   IL + ++ ++ QY++L + +G+ L+ T++++  
Sbjct: 287 YGLIPEFVGRLPVIATLDDLTEEDLIRILKEPKNAIVKQYQKLFEIDGVKLEVTDEALRI 346

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           +A  A+   +     GAR L+ V E ++ D+ F    L+
Sbjct: 347 IAREALKRGT-----GARALRNVFEELMIDMMFELPSLK 380


>gi|260887081|ref|ZP_05898344.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|330839142|ref|YP_004413722.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|260863143|gb|EEX77643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|329746906|gb|AEC00263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 425

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI   LD+Y+IGQ++AK+++++A+ N ++R    Q  AD   EL   NIL++GPTG G
Sbjct: 64  PKEIRQILDQYVIGQEEAKKSLSVAVYNHYKRINRTQGKAD-EVELQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILF+  GAF                         V R          P DLL    
Sbjct: 237 DTTNILFLCGGAFDGIEKIIEARLGKKNMGFGAEIESKVERNIGETLRHILPEDLLKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L++L +     ILT+ ++ L+ QY++L++ +G+ LDF E+++  +A 
Sbjct: 297 IPEFIGRLPIVVTLEALGEDTLVRILTEPKNALVKQYQKLLEMDGVKLDFDEEALHLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E ++ ++ +
Sbjct: 357 EALKRKT-----GARGLRSIIESIMRNVMY 381


>gi|254418572|ref|ZP_05032296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           sp. BAL3]
 gi|196184749|gb|EDX79725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           sp. BAL3]
          Length = 422

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DL+    
Sbjct: 238 DTANILFIVGGAFAGLEKVISARGAGASIGFGAQVKEIDERRTGDILKGVEPDDLMRFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT+ ++ L+ QYK L + E + L FT+D++ A+A 
Sbjct: 298 IPEFIGRLPVLATLEDLDETALVTILTEPKNALVKQYKRLFEMENVELTFTDDALIAVAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L +  F
Sbjct: 358 KAITRKT-----GARGLRSILEGILLETMF 382


>gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           2336]
 gi|189044137|sp|B0UW19|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           somnus 2336]
          Length = 414

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +   +  + EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRV 236

Query: 292 NTDHILFIASGAF-----------------------------HVS--------RPADLL- 313
           +T  ILFI  GAF                              VS         P DL+ 
Sbjct: 237 DTSKILFICGGAFAGLDKIIEKRTNTSGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMK 296

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E I L+FT++++ A
Sbjct: 297 FGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIA 356

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A+   +     GAR L++++E +L D  +    ++  + V+++ E V
Sbjct: 357 MAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETV 402


>gi|307297283|ref|ZP_07577089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916543|gb|EFN46925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 403

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I  ELD+Y+IGQ++AK+ +++++ N ++R  +  D+ D E+   NI+LVGPTG GK
Sbjct: 56  TPADIKKELDKYVIGQENAKKTISVSVYNHYKR--VFNDVDDVEIEKSNIMLVGPTGSGK 113

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I+R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 114 TLIARVLARILDVPFAIADATPLTEAGYVGEDVENIVLRLLQSA 157



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG++ +            ++  +
Sbjct: 167 GIIYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTTANVPPQGGRKHPYQEFIKV 226

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DL+    
Sbjct: 227 DTSNILFIVGGAFDGLDSVIKQRVLDSSMGFGAKVKGKNQLRLGEVLQQVVPDDLIQYGL 286

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GRFPV   L  L+  D + I+++  + ++ QY+ L+  +G+ L+F++D++ A+A+
Sbjct: 287 IPEFVGRFPVLAALNDLDVEDLKRIMSEPRNAILKQYQRLLGLDGVELEFSDDAMTAIAE 346

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
            A+   +     GAR L++V+E+V+ DI F    +   EK V+
Sbjct: 347 RAMKRGT-----GARALKSVIEQVMLDIMFDIPTMNNVEKVVI 384


>gi|58337154|ref|YP_193739.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus NCFM]
 gi|227903730|ref|ZP_04021535.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254471|gb|AAV42708.1| ATP-dependent protease [Lactobacillus acidophilus NCFM]
 gi|227868617|gb|EEJ76038.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 420

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|30264540|ref|NP_846917.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Ames]
 gi|42783609|ref|NP_980856.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           ATCC 10987]
 gi|47530003|ref|YP_021352.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49187364|ref|YP_030616.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Sterne]
 gi|49481515|ref|YP_038522.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141034|ref|YP_085795.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L]
 gi|65321841|ref|ZP_00394800.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Bacillus
           anthracis str. A2012]
 gi|165872008|ref|ZP_02216649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0488]
 gi|167636206|ref|ZP_02394510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0442]
 gi|167640744|ref|ZP_02399004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0193]
 gi|170688644|ref|ZP_02879849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0465]
 gi|170708362|ref|ZP_02898806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0389]
 gi|177653998|ref|ZP_02936039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0174]
 gi|190566821|ref|ZP_03019737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034498|ref|ZP_03101907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus W]
 gi|196039273|ref|ZP_03106579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus NVH0597-99]
 gi|196044901|ref|ZP_03112135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB108]
 gi|206975965|ref|ZP_03236875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus H3081.97]
 gi|217961964|ref|YP_002340534.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           AH187]
 gi|218905674|ref|YP_002453508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH820]
 gi|222097918|ref|YP_002531975.1| ATP-dependent protease ATP-binding subunit clpx [Bacillus cereus
           Q1]
 gi|225866453|ref|YP_002751831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB102]
 gi|227817253|ref|YP_002817262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. CDC 684]
 gi|228948186|ref|ZP_04110470.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093569|ref|ZP_04224670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-42]
 gi|229124012|ref|ZP_04253204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 95/8201]
 gi|229198601|ref|ZP_04325303.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1293]
 gi|229600744|ref|YP_002868756.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0248]
 gi|254687038|ref|ZP_05150896.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724600|ref|ZP_05186383.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. A1055]
 gi|254736576|ref|ZP_05194282.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Western North America USA6153]
 gi|254741614|ref|ZP_05199301.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Kruger B]
 gi|254754788|ref|ZP_05206823.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Vollum]
 gi|254757620|ref|ZP_05209647.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Australia 94]
 gi|301055979|ref|YP_003794190.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI]
 gi|46576502|sp|Q81LB9|CLPX_BACAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211433|sp|Q633X2|CLPX_BACCZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211498|sp|Q6HD54|CLPX_BACHK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211550|sp|Q72ZV4|CLPX_BACC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706576|sp|B7JQ65|CLPX_BACC0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706579|sp|B7HQN2|CLPX_BACC7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763832|sp|C3P9F7|CLPX_BACAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763833|sp|C3L704|CLPX_BACAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763834|sp|C1ETR8|CLPX_BACC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763835|sp|B9IZ47|CLPX_BACCQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|30259198|gb|AAP28403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. Ames]
 gi|42739538|gb|AAS43464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus ATCC 10987]
 gi|47505151|gb|AAT33827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181291|gb|AAT56667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. Sterne]
 gi|49333071|gb|AAT63717.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974503|gb|AAU16053.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus
           E33L]
 gi|164712298|gb|EDR17834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0488]
 gi|167511316|gb|EDR86702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0193]
 gi|167528427|gb|EDR91195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0442]
 gi|170126737|gb|EDS95620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0389]
 gi|170667330|gb|EDT18088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0465]
 gi|172081053|gb|EDT66131.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0174]
 gi|190561812|gb|EDV15781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis Tsiankovskii-I]
 gi|195993040|gb|EDX56999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus W]
 gi|196024389|gb|EDX63062.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB108]
 gi|196029900|gb|EDX68501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus NVH0597-99]
 gi|206745717|gb|EDZ57114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus H3081.97]
 gi|217063701|gb|ACJ77951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH187]
 gi|218538609|gb|ACK91007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH820]
 gi|221241976|gb|ACM14686.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus
           Q1]
 gi|225787496|gb|ACO27713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB102]
 gi|227002540|gb|ACP12283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. CDC 684]
 gi|228584883|gb|EEK42999.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1293]
 gi|228659314|gb|EEL14962.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 95/8201]
 gi|228689778|gb|EEL43584.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-42]
 gi|228811544|gb|EEM57881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229265152|gb|ACQ46789.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0248]
 gi|300378148|gb|ADK07052.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328376|gb|ADY23636.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 419

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ ++ F
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLEVMF 379


>gi|255528526|ref|ZP_05395308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
 gi|255507784|gb|EET84242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
          Length = 429

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ +AK+++A+A+ N ++R    A+  D EL   NILL+GPTG GKT
Sbjct: 63  PIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LA+    PF   + T  TE GYVG +VE I+  L+
Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLI 162



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           NT +ILFI  GAF  V R                                 P DLL    
Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K+    IL + ++ L+ QYK L + + + LDF E++++A+A+
Sbjct: 295 IPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEEEALEAIAN 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV       D GAR L+ ++E  ++DI F     +E   VVI+ + +
Sbjct: 355 EAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTI 397


>gi|83589393|ref|YP_429402.1| ATP-dependent protease ATP-binding subunit ClpX [Moorella
           thermoacetica ATCC 39073]
 gi|123524974|sp|Q2RL30|CLPX_MOOTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83572307|gb|ABC18859.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moorella
           thermoacetica ATCC 39073]
          Length = 419

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+I Q  AK+A+A+A+ N ++R  L   + D EL   NI+++GPTG GKT
Sbjct: 64  PKEIREILDQYVISQDQAKKALAVAVYNHYKRINLGMKMDDVELQKSNIIMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 235

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T +ILFI  GAF          +S+                         P DLL    
Sbjct: 236 DTTNILFICGGAFDGLDKIIKNRISQKTMGFGAEIRGKNDVQVGDILKQVLPVDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L+++    +LT+  + L+ QY++L + +G+ L+F ED++  +A 
Sbjct: 296 IPEFVGRLPVIVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E ++ D+ +
Sbjct: 356 EAIKRET-----GARGLRAILEEIMLDVMY 380


>gi|157149993|ref|YP_001450429.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262282292|ref|ZP_06060060.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189044157|sp|A8AXB9|CLPX_STRGC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157074787|gb|ABV09470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261583|gb|EEY80281.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 409

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E++  L+ Y+IGQ+ AKRA+A+A+ N ++R     D R+E    L   NIL++GPTG 
Sbjct: 64  PQELLHILNHYVIGQERAKRALAVAVYNHYKRINF-HDSREEDDVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENESYMQAIIAEDIQKFGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL + ++ L+ QY+ L+  + + L+F +D++  +A+ A
Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILREPKNALVKQYQALLSYDDVKLEFDDDALQEIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380


>gi|258625373|ref|ZP_05720270.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|262166051|ref|ZP_06033788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
 gi|262171084|ref|ZP_06038762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|258582364|gb|EEW07216.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|261892160|gb|EEY38146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|262025767|gb|EEY44435.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
          Length = 426

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401


>gi|153826369|ref|ZP_01979036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
 gi|149739847|gb|EDM54038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
          Length = 363

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 54/172 (31%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPAD---- 311
           +T  ILFI  GAF                                        P D    
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            L+PE  GR PV   L  L+++    IL + ++ L  QY  L   + +I  F
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFDWKTLIWSF 352


>gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           129PT]
 gi|122945369|sp|Q0I4F0|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           somnus 129PT]
          Length = 414

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +   +  + EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRV 236

Query: 292 NTDHILFIASGAF-----------------------------HVS--------RPADLL- 313
           +T  ILFI  GAF                              VS         P DL+ 
Sbjct: 237 DTSKILFICGGAFAGLDKIIEKRTNTGGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMK 296

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E I L+FT++++ A
Sbjct: 297 FGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIA 356

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A+   +     GAR L++++E +L D  +    ++  + V+++ E V
Sbjct: 357 MAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETV 402


>gi|227893377|ref|ZP_04011182.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|227864792|gb|EEJ72213.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
          Length = 432

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 73  PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 132

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 133 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 175



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 185 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 244

Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313
           +T +ILFI  GAF                       VS+            ADL     +
Sbjct: 245 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVSKVDADDWTRHLTTADLVKFGMI 304

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ ++ A+AD+
Sbjct: 305 PEFIGRIPIITTLDKLDSKDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADL 364

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N     +GAR L+T++E  + DI +
Sbjct: 365 AIQRN-----MGARGLRTIIENSIMDIMY 388


>gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
          Length = 456

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 85  LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 144

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 145 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 188



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 57/213 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  S            ++  
Sbjct: 197 YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQ 256

Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312
           I+T +ILFI  GAF                            +V        P DL    
Sbjct: 257 IDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKFG 316

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L +L+K+    ILT+ +++L+ QY+ L   +GI L+F  ++++A+A
Sbjct: 317 LIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIA 376

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           D ++   +     GAR L+ +ME  + D+ ++A
Sbjct: 377 DKSMERKT-----GARGLRAIMENSMMDLMYTA 404


>gi|195952527|ref|YP_002120817.1| ATP-dependent protease ATP-binding subunit ClpX [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254763851|sp|B4U6S1|CLPX_HYDS0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|195932139|gb|ACG56839.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 399

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI A+ SG+   ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 169 GIIYIDEIDKI-AKKSGHNPSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFI 227

Query: 290 SINTDHILFIASGAF--------------------HVSR------------PADLL---- 313
            ++T +ILFI  GAF                     +S+            P DL+    
Sbjct: 228 QLDTTNILFICGGAFVGLEDIIKRRLGKSTVGFETEISKYKEEGNILSQVEPDDLINFGL 287

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L + D   ILT+ ++ +I QYKEL++ EGI L+FTE ++  +A 
Sbjct: 288 IPEFVGRLPVISVLNELTEEDLIRILTEPKNAVIKQYKELLRMEGIGLEFTEGALREIAK 347

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVID 415
            A+   +     GAR L+ ++E+++ DI + A  L   + +VID
Sbjct: 348 EAIKRKT-----GARGLRAIVEKIMTDIMYEAPSLVNVEKIVID 386



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 3/111 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI   LD +IIGQ +AK+ +++A+ N ++R    +D   ++   NILL+GPTG GKT 
Sbjct: 60  PKEIKKILDEFIIGQDEAKKILSVAVYNHYKRILRKSD--TDIEKSNILLIGPTGSGKTL 117

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           +++ LA++   PF   + T  TE GYVG +VE + +R L +   NI +  +
Sbjct: 118 LAKTLAKILNVPFAIADATTLTEAGYVGEDVENVLVRLLQNCDYNIEKAKK 168


>gi|302551408|ref|ZP_07303750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469026|gb|EFL32119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           viridochromogenes DSM 40736]
          Length = 428

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A+ RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGAQIRSKREMESKDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V+ ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVVQSNV 408


>gi|224532149|ref|ZP_03672781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           valaisiana VS116]
 gi|224511614|gb|EEF82020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           valaisiana VS116]
          Length = 430

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISRTKKVVVTKESV 397



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|325662257|ref|ZP_08150872.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086069|ref|ZP_08335152.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471509|gb|EGC74730.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406992|gb|EGG86497.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 484

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I ++LD Y++GQ+ AK+A+A+A+ N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 133 APHKIKAKLDEYVVGQEHAKKAMAVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 190

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R
Sbjct: 191 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 244



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 245 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 304

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 305 KNILFICGGAFPDLEEIIKERLNKQASIGFTADLKDKWNHDKNILEKVTAEDLRNFGMIP 364

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ LN+     IL + ++ ++ QY++L+  + + L+F E +++A+A  A
Sbjct: 365 EFIGRLPIIFTLQGLNEEMLVKILKEPKNAILKQYQKLLALDEVKLEFDEAALEAIAKRA 424

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +  N+     GAR L+ ++E  + DI +    D     V I  EY+ 
Sbjct: 425 MEKNT-----GARALRAIIEEFMLDIMYEIPKDDNIGQVTITKEYIE 466


>gi|258621303|ref|ZP_05716337.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
 gi|258586691|gb|EEW11406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
          Length = 426

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADL--- 312
           +T  ILFI  GAF      + R                               P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIERRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    ++E   VVID
Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401


>gi|24379392|ref|NP_721347.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           mutans UA159]
 gi|290580606|ref|YP_003484998.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
 gi|46576567|sp|Q8DUI0|CLPX_STRMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24377322|gb|AAN58653.1|AE014935_5 ATP-dependent protease Clp, ATPase subunit ClpX [Streptococcus
           mutans UA159]
 gi|254997505|dbj|BAH88106.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
          Length = 410

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E+++ LD Y+IGQ  AKRA+A+A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLAILDSYVIGQDRAKRALAVAVYNHYKRISFTESQDDQDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKKIDDQSSYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+ ++ L+ QY+ L+  +G+ L+F ++++ A+A  A
Sbjct: 298 EFIGRLPVLAALEQLTVDDLVKILTEPKNALVKQYQTLLSYDGVELEFDQEALQAIAQKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + D+ F     ++ T V
Sbjct: 358 IERKT-----GARGLRSIIEETMLDLMFEIPSQEDVTCV 391


>gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
 gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
          Length = 421

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R    Q   D+  EL   NILL+GPTG 
Sbjct: 65  TPKDICDVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        +R                            P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDRIIAARGKGSAMGFGADVRDKDARGIGEIFTDLEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D++ A+A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDTQLTFTDDALAAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+   +     GAR L++++E +L D  F    +   T VV++ E V
Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFELPGMDTVTEVVVNEEAV 400


>gi|149196343|ref|ZP_01873398.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149140604|gb|EDM29002.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 429

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRD-ELMPKN 55
           K+ FN  +P+EI   LD Y+IGQ  AKR +++A+ N ++R Q     P    D E+   N
Sbjct: 63  KIPFNLLAPKEIKHVLDDYVIGQDYAKRTLSVAVYNHYKRVQNNLFHPEGAHDLEMEKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +LL+GP+G GKT +++ LA++   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 VLLLGPSGCGKTLLAKTLAKVLDVPFTIFDATTVTEAGYVGEDVENIILRLIQAA 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 63/233 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YG 289
            YGI+++DE DK   +     I   VS EGVQ+ LL ++EG+  +             Y 
Sbjct: 185 QYGIIYVDEIDKKAKKGENMSITRDVSGEGVQQSLLKIIEGTHCNVPPKGGRKHPNQDYI 244

Query: 290 SINTDHILFIASGAF--------------------------------HVSR---PADL-- 312
            I+T +ILFI +GAF                                 + R   P DL  
Sbjct: 245 QIDTRNILFICAGAFVGLEDVIRGRLGRRVIGFADQGNGVKSDAEIEEIMREVEPGDLVK 304

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE+ GR PV   L  L + D   ILT+ ++++I QY+ ++ ++GI L F+++++  
Sbjct: 305 YGLIPELIGRLPVISTLNPLKEEDLVHILTNVKNSIIKQYQYILMSDGIKLSFSDEALKE 364

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           +A  A++  +     GAR L++++E+ + ++ F   S +D++E  V+I  E+V
Sbjct: 365 MAHQAIDKGT-----GARGLRSILEKSMLELMFELPSRTDVEE--VIISKEFV 410


>gi|319939271|ref|ZP_08013634.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
 gi|319811667|gb|EFW07943.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
          Length = 410

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  DE    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNHEDEEDVELQKSNILMIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKSIDETGSYMQEIISEDIQKFGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL + ++ L+ QY+ L+  + + L+F +D++  +A+ A
Sbjct: 299 ELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381


>gi|15606540|ref|NP_213920.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5]
 gi|6225162|sp|O67356|CLPX_AQUAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2983756|gb|AAC07316.1| ATP-dependent protease ATPase subunit clpX [Aquifex aeolicus VF5]
          Length = 412

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI A+ SG    ++R    EGVQ+ LL +VEGS V+            ++ 
Sbjct: 177 GIVYIDEIDKI-AKKSGINPSITRDVSGEGVQQALLKIVEGSVVNVPPQGGRKHPHQEFI 235

Query: 290 SINTDHILFIASGAF-----------------------HVSRPADLL------------- 313
            ++T  ILFI  GAF                        V +  DLL             
Sbjct: 236 QVDTTDILFICGGAFVGLEDIIKQRLGKSRVGFEAEIKKVDKEQDLLELVEPDDLIRFGM 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GRFPV   L+ L + +   IL + ++ L+ QY++L + EG+ L FTE ++  +A 
Sbjct: 296 IPEFIGRFPVIATLRELTEDELVRILVEPKNALVKQYQKLFELEGVKLTFTEKALREIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L+ +ME ++ DI F    L   K V+ID   V+
Sbjct: 356 EAIRRKT-----GARGLRAIMEDIMADIMFEVPSLPGVKEVIIDENVVK 399



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 18/146 (12%)

Query: 2   KLTFNF------SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-EL 51
           K ++NF       P +I   LD Y+IGQ+ AK+ +++A+ N ++R   ++    L D EL
Sbjct: 49  KTSYNFELKDIPKPEQIKKILDEYVIGQERAKKILSVAVYNHYKRIKAKEAGLSLDDVEL 108

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT ++R LA++   PF   + T  TE GYVG +VE ++  L+    
Sbjct: 109 EKSNILLIGPTGSGKTLLARTLAKILNVPFAIADATSLTEAGYVGEDVENVLVRLLQACD 168

Query: 112 NIVRESRR--------DEVREQASIN 129
             V+ +++        D++ +++ IN
Sbjct: 169 YDVKAAQKGIVYIDEIDKIAKKSGIN 194


>gi|269219683|ref|ZP_06163537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269210925|gb|EEZ77265.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 419

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE---LMPKNILLVGPT 62
           PREI   L+ Y+IGQ  AKR +A+A+ N ++R   Q  P   +DE   +   NILL+GPT
Sbjct: 66  PREIYEFLNEYVIGQDTAKRTLAVAVYNHYKRIRAQGGPKRSQDEEVQIGKSNILLLGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 GTGKTYLAQSLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            +Y  +
Sbjct: 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQL 242

Query: 292 NTDHILFIASGAF----------------------HVS----------RPADL-----LP 314
           +T +ILFI +GAF                      HV+           P DL     +P
Sbjct: 243 DTSNILFICAGAFAGMEEIISSRTGRRGIGFGSELHVADNGAEVLSEATPEDLHKFGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV    + L + D   ILT+ ++ L+ QY+ + + +G+ L    +++  ++  A
Sbjct: 303 ELVGRLPVVAATEELTEGDLIRILTEPKNALVRQYERMFELDGVRLQIDGEALHEISREA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           +   +     GAR L+++ME +L++  F   S SD+++  +V DA  V+
Sbjct: 363 IARGT-----GARGLRSIMESLLKEAMFEVPSRSDVEK--IVFDAAAVK 404


>gi|222055724|ref|YP_002538086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
 gi|254763849|sp|B9M0Y2|CLPX_GEOSF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221565013|gb|ACM20985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
          Length = 417

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +    P ++  E+   NILL+GPTG G
Sbjct: 66  PLEIKDVLDEYVIGQKQAKKVLAVAVYNHYKRIEAMTKPGEV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A
Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313
           +T +ILFI  GAF                     V +              P DLL    
Sbjct: 238 DTTNILFICGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     IL + ++ L+ QY++L   E + L FT+ S+ A+A 
Sbjct: 298 IPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFDMEHVKLKFTDGSLVAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S    K VVI  + +
Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVISEDVI 400


>gi|270263571|ref|ZP_06191840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
 gi|270042455|gb|EFA15550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
          Length = 423

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +     VVID
Sbjct: 359 AKKAMTRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 399


>gi|310657901|ref|YP_003935622.1| clpx-clpp ATP-dependent serine protease ATPase and specificity
           subunit [Clostridium sticklandii DSM 519]
 gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Clostridium sticklandii]
          Length = 421

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66
           P+EI   LD Y+IGQ DAK+ +A+A+ N ++R   +    +D EL   NIL++GPTG GK
Sbjct: 63  PKEIKDYLDEYVIGQDDAKKTLAVAVYNHYKRIYAVDGKAKDIELQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 123 TLLAQTLAKMLNVPFAMADATALTEAGYVGEDVENILLKLIQAS 166



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 176 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTKANVPPQGGRKHPHQEFLQI 235

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           +T +ILFI  GAF                      VS+               DLL    
Sbjct: 236 DTTNILFIVGGAFDGIDKIIQRRMGEKALGFGAKIVSKNDIAVGEIYKQVQTEDLLRFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     IL + ++ L+ Q+K+L + + +ILD  ++++  +A 
Sbjct: 296 IPEFIGRVPVVVSLDPLDEKALISILKEPKNALVKQFKKLFEMDKVILDIEDEALVEVAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E+V+ DI +
Sbjct: 356 KAIAKKT-----GARGLRSILEKVMMDIMY 380


>gi|296184878|ref|ZP_06853289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
 gi|296050660|gb|EFG90083.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
          Length = 429

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ +AK+++A+A+ N ++R    A+  D EL   NILL+GPTG GKT
Sbjct: 63  PIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LA+    PF   + T  TE GYVG +VE I+  L+
Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLI 162



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           NT +ILFI  GAF  V R                                 P DLL    
Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K+    IL + ++ L+ QYK L + + + LDF E++++A+A+
Sbjct: 295 IPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEEEALEAIAN 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            AV       D GAR L+ ++E  ++DI F     +E   VVI+ + +
Sbjct: 355 EAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTI 397


>gi|229105111|ref|ZP_04235762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-28]
 gi|228678292|gb|EEL32518.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-28]
          Length = 444

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434


>gi|169334563|ref|ZP_02861756.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259280|gb|EDS73246.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM
           17244]
          Length = 420

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P +I   LD Y+IGQ DAK+ +A+A+ N ++R  +  +  D     EL   NILL GPTG
Sbjct: 73  PNKIKELLDEYVIGQDDAKKTLAVAVYNHYKRINVAENSDDKDSDVELQKSNILLTGPTG 132

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 133 SGKTLLASTLARILKVPFAIADATALTEAGYVGEDVENILLRLIQAA 179



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 60/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ +             +  I
Sbjct: 189 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTANVPPQGGRKHPHQDFIQI 248

Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312
           +T  ILFI  GAF                                   +++P D     L
Sbjct: 249 DTKDILFICGGAFDGLDEVVKKRLGTHSMGFGNDITGVKDKSTDDLFKLAQPQDFVKYGL 308

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+   LK L++     ILT  ++ LI QYK L+  + + L F +++++ +A 
Sbjct: 309 IPELVGRLPISASLKKLDEKALVNILTKPKNALIKQYKYLLSLDDVDLHFDKEAVNLIAK 368

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA---SDLQEKTVV 413
             V   +     GAR L++++E ++ D+ + A    D++E TV 
Sbjct: 369 ETVKRET-----GARGLRSILEDIMLDVMYEAPSREDVKELTVT 407


>gi|302391291|ref|YP_003827111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium
           arabaticum DSM 5501]
 gi|302203368|gb|ADL12046.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium
           arabaticum DSM 5501]
          Length = 416

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 1   MKLTFNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNIL 57
           M + FN   +P+EI   LD+Y+IGQ+ AK+ +++A+ N ++R      + D EL   NI 
Sbjct: 55  MDVGFNNVPNPQEIKDILDQYVIGQERAKKTLSVAVYNHYKRVNSGMQVDDVELEKSNIC 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 115 LIGPTGCGKTLLAQTLAKILDVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312
           +T +ILFI  GAF                                   HV         L
Sbjct: 237 DTTNILFICGGAFNGLDDIIKSRIDEKVMGFGADIKSEKDEDIGEVLKHVKSQDVLKYGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L +     ILT+  + L+ QY +  + +G+ L+FTED++ A+AD
Sbjct: 297 IPEFVGRIPVLATLDQLGEDALVEILTEPRNALVKQYTKFFELDGVDLEFTEDALHAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+       D GAR L++++E  + +I +
Sbjct: 357 KALE-----HDTGARGLRSIVEESILEIMY 381


>gi|91216685|ref|ZP_01253650.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis
           ATCC 700755]
 gi|91185154|gb|EAS71532.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis
           ATCC 700755]
          Length = 410

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 56/226 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+            K+  
Sbjct: 173 HGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIE 232

Query: 291 INTDHILFIASGAF-----HVSR----------------------------PADL----- 312
           +NT++ILFIA GAF     ++S+                            P DL     
Sbjct: 233 VNTENILFIAGGAFDGIEKNISKRLNMQAVGYGASKLGESVDKENILQYIIPKDLKDYGL 292

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PEI GR PV  ++  L+K   R ILT+ ++ +I QYK+L + + I    T+ ++D +  
Sbjct: 293 IPEIIGRLPVLTYMDPLDKETLRRILTEPKNAIIKQYKKLFEMDNIDFQITDGALDFIVQ 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            A+        +GAR L+++ E +L D  F   +  E    +   Y
Sbjct: 353 KALEYK-----LGARGLRSLCEAILTDAMFYLPESDETEFKVTKSY 393



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+ I   LD+Y+IGQ   K+ +++A+ N ++R   P    D E+   NI++ G TG GKT
Sbjct: 62  PKAIKDFLDQYVIGQDQTKKVMSVAVYNHYKRLLQPKSKDDIEIQKSNIIMAGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVETILTKLLAAA 164


>gi|239979445|ref|ZP_04701969.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces albus
           J1074]
 gi|291451315|ref|ZP_06590705.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
           J1074]
 gi|291354264|gb|EFE81166.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
           J1074]
          Length = 428

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      P    D  EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGQNGAPGGREDAIELGKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEEKDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VVI AE V+ ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITAEVVQSNV 408


>gi|88810608|ref|ZP_01125865.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
 gi|88792238|gb|EAR23348.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
          Length = 425

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +      + EL   NILL+GPTG GKT
Sbjct: 69  PHEIKTVLDDYVIGQEQAKKVLSVAVYNHYKRMEASHSKSEVELSKSNILLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 LLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFHV-----------------------------------SRPADLL--- 313
           NT +ILFI  GAF                                       P DL+   
Sbjct: 241 NTGNILFICGGAFAGLEKIIQQRSERGGIGFSAEIKGREQRKSIGDSLRDVEPEDLIRYG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L++     IL + ++ L+ QY++L   EG  L+F ED++  +A
Sbjct: 301 LIPEFVGRMPVVATLTELDEEALMRILIEPKNALVKQYQKLFTMEGAALEFREDALRGVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             A+   +     GAR L+T++ERVL D  +    ++  + V+  E V
Sbjct: 361 RNAMERKT-----GARGLRTLIERVLLDTMYELPSMEHVSKVVVDESV 403


>gi|330836760|ref|YP_004411401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
 gi|329748663|gb|AEC02019.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
          Length = 410

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 4/116 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI S LD Y+IGQ  AKR +++A+ N ++R     +L  +   E+   NIL++GPTG
Sbjct: 59  TPQEIKSYLDDYVIGQDAAKRVLSVAVYNHYKRIKYQNRLSKEEGVEMDKSNILMIGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LAR    PF   + T  TE GYVG +VE I+  L+  A + + E+ R
Sbjct: 119 TGKTLLARTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNIAEAER 174



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 175 GIIFIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVPPQGGRKHPNQEMIKI 234

Query: 292 NTDHILFIASGAFH----------VSRPAD----------------------------LL 313
           NT +ILFI  GAF            S+P                              L+
Sbjct: 235 NTSNILFICGGAFVGLEKVIEKRVASQPMGFGATLSSSQKDLSTLYKELLPDDLVKFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+ V L +L K D   I+++ ++ ++ QY    K + + L+F ++++DA+A+ 
Sbjct: 295 PEFIGRLPIHVSLDNLKKEDLIRIISEPKNAILRQYVASFKLDNVSLEFKQEAVDAIAEK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+   +     GAR L++++E ++ DI +    +   K VVID + V
Sbjct: 355 AIGQKT-----GARGLRSIVENIMIDIMYDIPSMSNVKKVVIDRDAV 396


>gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 417

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 105/228 (46%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  + +   I   VS EGVQ+ LL L+EG+  SV  K G          +
Sbjct: 185 GIIFIDEIDKIARKTANPSITRDVSGEGVQQGLLKLLEGTVASVPPKGGRKHPEQPLVQV 244

Query: 292 NTDHILFIASGAF----------------------HVS------------RPADLL---- 313
           NT +ILFI  GAF                      H +             P DL+    
Sbjct: 245 NTRNILFICGGAFETLDKIISQRVNQGGMGFGADIHTASENSLSELFKQLEPEDLIKFGL 304

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PEI GR P+ V L+ L+++    ILT  ++ L+ QYK L   + I L+F +D++  +  
Sbjct: 305 IPEIVGRLPIAVALEELDETALLNILTKPKNALVKQYKSLFAMDNIKLEFEDDALKEIVR 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +   +     GAR L++VMERVL+   F      EK   +  E V+
Sbjct: 365 ETMTRKT-----GARGLRSVMERVLQQAMFKMPGSGEKKFTVTVEMVK 407



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI + LD ++IGQ  AK A+++A+ N ++R +     +     ++   N+LLVGPTG 
Sbjct: 70  PTEIKAHLDDFVIGQDRAKMALSVAVYNHYKRLRYKQTHKSKDDVDVEKSNLLLVGPTGS 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +AR    PF   + T  TE GYVG +V+ II  L+  A
Sbjct: 130 GKTLLAQTMARFLDVPFTIADATVLTEAGYVGEDVDSIIVRLLQAA 175


>gi|85058650|ref|YP_454352.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|123519920|sp|Q2NV78|CLPX_SODGM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|84779170|dbj|BAE73947.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 424

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTNNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF----------------------------HVSR--------PADLL-- 313
           +T  ILFI  GAF                             V++        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTETNRGIGFSATVKGSSEKVTKGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILHEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A  A+   +     GAR L++++E  L +  +   + D  EK V+ +A
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLETMYELPSQDSVEKVVIDEA 401


>gi|15895897|ref|NP_349246.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           acetobutylicum ATCC 824]
 gi|21263476|sp|Q97FT7|CLPX_CLOAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15025666|gb|AAK80586.1|AE007761_5 ATP-dependent protease Clp, ATPase subunit ClpX [Clostridium
           acetobutylicum ATCC 824]
 gi|325510049|gb|ADZ21685.1| ATP-dependent protease ATP-binding subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 432

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD+Y++GQ+DAK+++++A+ N ++R    L  +   EL   NILL+GPTG GK
Sbjct: 63  PSEIKDYLDQYVVGQEDAKKSLSVAVYNHYKRINSNLSNNDDIELQKSNILLLGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TFLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----------HVSR-----------------------PADLL---- 313
           NT +ILFI  GAF            VS                        P DLL    
Sbjct: 236 NTTNILFICGGAFDGVDKIIENRTRVSTIGFGASIQSKQQKDIGAILKKIMPGDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L SL++     +L++ ++ L+ QY++L++ + + L+F + ++ A+A 
Sbjct: 296 IPEFIGRLPIIVTLNSLDQGALVKVLSEPKNALVKQYEKLLQMDNVELEFKDGALKAIAS 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++ ++     GAR L+ ++E +++DI F
Sbjct: 356 EAISRST-----GARGLRAIVEDIMKDIMF 380


>gi|268592035|ref|ZP_06126256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
 gi|291312427|gb|EFE52880.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
          Length = 425

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESDKATEGELLTQAEPEDLIKF 299

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   E   L+F E+++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLENTELEFREEALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E  L +  +   S SD+++  VV+D
Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400


>gi|229032126|ref|ZP_04188103.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1271]
 gi|228729182|gb|EEL80181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1271]
          Length = 444

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434


>gi|163942220|ref|YP_001647104.1| ATP-dependent protease ATP-binding subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|229013688|ref|ZP_04170817.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides DSM 2048]
 gi|229135318|ref|ZP_04264112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST196]
 gi|229169215|ref|ZP_04296929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH621]
 gi|229175154|ref|ZP_04302670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus MM3]
 gi|163864417|gb|ABY45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           weihenstephanensis KBAB4]
 gi|228608290|gb|EEK65596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus MM3]
 gi|228614281|gb|EEK71392.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH621]
 gi|228648141|gb|EEL04182.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST196]
 gi|228747610|gb|EEL97484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides DSM 2048]
          Length = 444

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434


>gi|197117661|ref|YP_002138088.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           bemidjiensis Bem]
 gi|253701608|ref|YP_003022797.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter sp. M21]
 gi|238690892|sp|B5EI28|CLPX_GEOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491260|sp|C6E2S9|CLPX_GEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197087021|gb|ACH38292.1| ATP-dependent chaperone and Clp protease specificity component ClpX
           [Geobacter bemidjiensis Bem]
 gi|251776458|gb|ACT19039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M21]
          Length = 417

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P+EI   LD Y+IGQ  AK+ +A+A+ N ++R +    P D+  E+   NILL+GPTG G
Sbjct: 66  PQEIKEVLDEYVIGQSRAKKVLAVAVYNHYKRVEAAVKPGDV--EMQKSNILLLGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +
Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQAS 168



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILFI  GAF                         V +          P DLL    
Sbjct: 238 DTTNILFICGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGF 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++     IL + ++ LI QY++L   E + L FT+ S+ A+A 
Sbjct: 298 IPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFDMEHVKLKFTDGSLVAIAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E  + DI +   S    K VVI+ E +
Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQSMVKEVVINEEVI 400


>gi|81428671|ref|YP_395671.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610313|emb|CAI55362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 417

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           PREI++ L+ Y+IGQ +AK+A+++A+ N ++R  Q   A+  D EL   NI L+GPTG G
Sbjct: 65  PREILAILNDYVIGQTEAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTFLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 179 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQI 238

Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313
           +T +ILFI  GAF                       +  D                  ++
Sbjct: 239 DTTNILFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQFGII 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ L+ QY +LM  + + L+FT +++ A+A +
Sbjct: 299 PEFIGRIPITAALEKLTEDDLVRILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHL 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E V+ D+ F
Sbjct: 359 AIERNT-----GARGLRSIIEEVMMDMMF 382


>gi|330718624|ref|ZP_08313224.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc fallax
           KCTC 3537]
          Length = 374

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P +IV++L+ Y+IGQ +AK+ +A+A+ N ++R  + L      EL   NI L+GPTG G
Sbjct: 23  TPHDIVAKLNDYVIGQDEAKKTLAVAVYNHYKRINESLVKTTDVELQKSNIALLGPTGSG 82

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 83  KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 127



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 137 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTTASVPPQGGRKHPQQELIQV 196

Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312
           NT +ILFI  GAF                                   HV+        L
Sbjct: 197 NTTNILFIVGGAFAGIDTLIKERLGERVIGFGMDANRTDEFLSGNILRHVASEDLTKFGL 256

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L   D   ILT+ ++ +I QY+ L+  + + L+F  +++ A+A 
Sbjct: 257 IPEFIGRLPIITVLDELKIDDLVRILTEPKNAVIKQYQALLGFDDVDLEFQPEALQAMAS 316

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A++  +     GAR L++++E+V++DI +
Sbjct: 317 LAIDRKT-----GARGLRSIIEKVMKDIMY 341


>gi|312882506|ref|ZP_07742247.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369906|gb|EFP97417.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 427

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG GK
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 361 AKKAMDRKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDDSVIK 406


>gi|229087037|ref|ZP_04219191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-44]
 gi|228696300|gb|EEL49131.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-44]
          Length = 419

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379


>gi|319941576|ref|ZP_08015902.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804946|gb|EFW01788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
           wadsworthensis 3_1_45B]
          Length = 456

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 7/110 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-----LRD--ELMPKNILLVG 60
           +PRE+   LD Y+IGQ+ AKR +++A+ N ++R     D     L D  EL   N+LL+G
Sbjct: 80  TPRELYELLDNYVIGQERAKRTLSVAVFNHYKRLNTLGDKKLKALEDKVELQKSNVLLIG 139

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 140 PTGSGKTLLAQTLARALDVPFAIADATTLTEAGYVGEDVENIVAKLVQAA 189



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI++LDE DKI  +     I   VS EGVQ+ LL LVEG+  S+  K G          +
Sbjct: 199 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTIASMPVKGGRKNPGKAMMEV 258

Query: 292 NTDHILFIASGAF--------HVSRPAD-------------------------------L 312
           +T  ILFI  GAF        H +  ++                               L
Sbjct: 259 DTSQILFICGGAFDGMERIVRHRTEKSEIGFSGTVVGKKDHNLTDVFRQIETGDLVKYGL 318

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ LN+     ILT  ++ ++ QY+ L   E + ++FT +++ A+A 
Sbjct: 319 IPELVGRLPVITVLEELNEEALIEILTKPKNAIVRQYQVLFAMEDVDIEFTPEALKAIAH 378

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E +L D  F
Sbjct: 379 QAIERKT-----GARGLRSIIEALLLDTMF 403


>gi|319758057|gb|ADV69999.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           JS14]
          Length = 408

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL++GPTG 
Sbjct: 63  PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                   H +R  D                  ++P
Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  L   D   ILT+ ++ L+ QY+  +  + + LDF ED++ A+A+ A
Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTFLSYDDVELDFDEDALLAIAEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379


>gi|331001371|ref|ZP_08324995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parasutterella excrementihominis YIT 11859]
 gi|329568630|gb|EGG50432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parasutterella excrementihominis YIT 11859]
          Length = 441

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +       +D + E+   NILL+GPT
Sbjct: 92  TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           G GKT +++ LA++   PF   + T  TE GYVG +VE +I  L+
Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLL 196



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI++LDE DKI  +     I   VS EGVQ+ LL LVEG+  +                +
Sbjct: 209 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPV 268

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312
           +T +ILFI  GAF               +   AD                         L
Sbjct: 269 DTSNILFICGGAFEGLDKIIRRRTERSGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGL 328

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     ILT+ ++ ++ QY  L + EG++L+   D++   A 
Sbjct: 329 IPELVGRLPVIATLDDLDEEALIRILTEPKNAVLKQYARLFELEGVVLEVEPDALKEAAK 388

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A    +     GAR L++++E  L    F
Sbjct: 389 MAQERKT-----GARGLRSIIENALLSAMF 413


>gi|242240291|ref|YP_002988472.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya dadantii
           Ech703]
 gi|242132348|gb|ACS86650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech703]
          Length = 424

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A+   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGEANGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313
           +T  ILFI  GAF                                     HV  P DL+ 
Sbjct: 239 DTSKILFICGGAFAGLDRIIEQRTDTGRGIGFNATVKGSTQKATEGELLGHVE-PGDLIK 297

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   LK L++     IL + ++ L  QY+ L K EG+ L+F ++++ A
Sbjct: 298 FGLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGVDLEFRDEALTA 357

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           +A  A+     +   GAR L++++E  L D  +    L+    VVID
Sbjct: 358 IAKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSLENVDKVVID 399


>gi|212709198|ref|ZP_03317326.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
 gi|212688110|gb|EEB47638.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
          Length = 425

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAQVKGESEKATEGELLTQAEPEDLIKF 299

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILKEPKNALTKQYQALFNLEGTELEFREEALTAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E  L +  +   S SD+++  VV+D
Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400


>gi|261822506|ref|YP_003260612.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           wasabiae WPP163]
 gi|261606519|gb|ACX89005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium wasabiae WPP163]
          Length = 424

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 101/227 (44%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313
           +T  ILFI  GAF                                     HV  P DL+ 
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKATEGELLSHV-EPGDLIK 297

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A
Sbjct: 298 FGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTA 357

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           +A  A+     V   GAR L++++E  L +  +    L+    VVID
Sbjct: 358 IAKKAM-----VRKTGARGLRSIVEAALLETMYDLPSLESVDKVVID 399


>gi|127513435|ref|YP_001094632.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica
           PV-4]
 gi|166215203|sp|A3QFX5|CLPX_SHELP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126638730|gb|ABO24373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           loihica PV-4]
          Length = 426

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNATPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRSHVGTGIGFGAEVKGEADKATISDVLLQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ L  Q+  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E +L DI +     +    VVID   V+
Sbjct: 360 ALKAMDRKT-----GARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405


>gi|56964401|ref|YP_176132.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus clausii
           KSM-K16]
 gi|61211410|sp|Q5WEN9|CLPX_BACSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56910644|dbj|BAD65171.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           clausii KSM-K16]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y+IGQ++AK+++++A+ N ++R    +   D EL   NI L+GPTG GKT
Sbjct: 64  PNEICSILDDYVIGQREAKKSLSVAVYNHYKRINSMSRSEDVELSKSNITLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI  GAF                                ++S+  P DLL    
Sbjct: 236 DTTNVLFICGGAFDGIEQIIKRRLGKKVIGFGTDDAKQDDLKPGEYLSKVLPEDLLRFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+      ILT  ++ L+ QY++L++ + + L+FTED++  +A+
Sbjct: 296 IPEFIGRLPIISSLSPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTEDALREIAN 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E ++ D+ F
Sbjct: 356 KAIERKT-----GARGLRSIIEGIMLDVMF 380


>gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704241|sp|A6VME2|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Actinobacillus succinogenes 130Z]
          Length = 411

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 13/107 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ  AK+ +A+AL N ++R      LR        EL   N+LL+G
Sbjct: 63  TPHEIREHLDDYVIGQDYAKKVLAVALYNHYKR------LRSGHKTDAVELSKSNVLLIG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 117 PTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENIIQKLL 163



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  + +   I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 176 GIIYIDEIDKITRKSANPSITRDVSGEGVQQALLKMIEGTIAAVPPQGGRKHPQQDMIRV 235

Query: 292 NTDHILFIASGAF-----------HVSR------------------------------PA 310
           +T  ILFI  GAF           HV                                  
Sbjct: 236 DTSKILFICGGAFAGLDKIIEKRVHVGSGIGFNAEVKGEQDELTLTDLFKQIETEDLIKF 295

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR PV   L  L+++    ILT+ ++ L  QY+ L   E + L+FT +S+ A+
Sbjct: 296 GMIPEFIGRLPVIAPLSELDENALISILTEPKNALTKQYQALFGLEDVELEFTPESLKAM 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+   +     GAR L++++E +L D  +
Sbjct: 356 AKKALARKT-----GARGLRSIVEGILLDTMY 382


>gi|254520130|ref|ZP_05132186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           sp. 7_2_43FAA]
 gi|226913879|gb|EEH99080.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           sp. 7_2_43FAA]
          Length = 431

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI + LD+Y+IGQ+ AK+++++A+ N ++R  + ++L D   EL   NILL+GPTG G
Sbjct: 63  PNEIKNYLDQYVIGQEKAKKSLSVAVYNHYKR--INSNLIDDDIELQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQSA 165



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFLQI 234

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313
           NT +ILFI  GAF                       SR             P+DLL    
Sbjct: 235 NTSNILFICGGAFDGVDKIIEKRTEKSSIGFGANITSRHTKDVGKLLKDIMPSDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L+SL+      ILT  ++ L+ QY++L + + + LDFT+D++ A+A+
Sbjct: 295 IPEFVGRLPVVVTLESLDNDALVNILTQPKNALVKQYRKLFEIDNVELDFTDDALKAIAN 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E ++ ++ F   SD     V+I+ + ++
Sbjct: 355 EAIERKT-----GARGLRSIVEEMMTEVMFDIPSDETISKVIINEDCIK 398


>gi|146318491|ref|YP_001198203.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05ZYH33]
 gi|145689297|gb|ABP89803.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           05ZYH33]
          Length = 396

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL++GPTG 
Sbjct: 63  PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                   H +R  D                  ++P
Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  L   D   ILT+ ++ L+ QY+ L+  + + LDF ED++ A+A+ A
Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379


>gi|114327970|ref|YP_745127.1| ATP-dependent protease ATP-binding subunit ClpX [Granulibacter
           bethesdensis CGDNIH1]
 gi|122327068|sp|Q0BSJ8|CLPX_GRABC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114316144|gb|ABI62204.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Granulibacter bethesdensis CGDNIH1]
          Length = 420

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLAHGQKNNDIEIGKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 238 DTTNILFICGGAFAGLEKIIGSRGKGGGIGYGAEVRDPDERRTGEILREVEPEDLLRFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + EG+ L FT+D++ ++A+
Sbjct: 298 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVSLSFTDDALKSVAN 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            A+   +     GAR L++++E +L    +    ++  + VVI+ E
Sbjct: 358 RAIARKT-----GARGLRSILEGILLGTMYDLPGMENVEEVVINGE 398


>gi|303257391|ref|ZP_07343404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Burkholderiales bacterium 1_1_47]
 gi|302859748|gb|EFL82826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Burkholderiales bacterium 1_1_47]
          Length = 441

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +       +D + E+   NILL+GPT
Sbjct: 92  TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           G GKT +++ LA++   PF   + T  TE GYVG +VE +I  L+
Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLL 196



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           GI++LDE DKI  +     I   VS EGVQ+ LL LVEG+  +                +
Sbjct: 209 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPV 268

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312
           +T +ILFI  GAF               +   AD                         L
Sbjct: 269 DTSNILFICGGAFEGLDKIIRRRTERSGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGL 328

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     ILT+ ++ ++ QY  L + EG++L+   D++   A 
Sbjct: 329 IPELVGRLPVIATLDDLDEEALIRILTEPKNAVLKQYARLFELEGVVLEVEPDALKEAAK 388

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A    +     GAR L++++E  L    F
Sbjct: 389 MAQERKT-----GARGLRSIIENALLSAMF 413


>gi|229111943|ref|ZP_04241487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-15]
 gi|228671507|gb|EEL26807.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-15]
          Length = 444

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLMLQD 434


>gi|261346363|ref|ZP_05974007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
 gi|282565677|gb|EFB71212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
          Length = 425

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESEKATEGELLTQAEPEDLIKF 299

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELSEDALIQILKEPKNALTKQYQALFSLEGTELEFREEALVAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E  L +  +   S SD+++  VV+D
Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400


>gi|152976887|ref|YP_001376404.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189082483|sp|A7GTF1|CLPX_BACCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|152025639|gb|ABS23409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cytotoxicus NVH 391-98]
          Length = 419

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PIEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379


>gi|146320684|ref|YP_001200395.1| ATP-dependent protease ATP-binding protein ClpX [Streptococcus suis
           98HAH33]
 gi|223932113|ref|ZP_03624117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|253751619|ref|YP_003024760.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|253753521|ref|YP_003026662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|253755654|ref|YP_003028794.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|302023732|ref|ZP_07248943.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05HAS68]
 gi|330832767|ref|YP_004401592.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
 gi|145691490|gb|ABP91995.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           98HAH33]
 gi|223899094|gb|EEF65451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|251815908|emb|CAZ51522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|251818118|emb|CAZ55912.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|251819767|emb|CAR45665.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|292558274|gb|ADE31275.1| ClpX, ATPase regulatory subunit [Streptococcus suis GZ1]
 gi|329306990|gb|AEB81406.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
          Length = 408

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL++GPTG 
Sbjct: 63  PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                   H +R  D                  ++P
Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  L   D   ILT+ ++ L+ QY+ L+  + + LDF ED++ A+A+ A
Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379


>gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus
           nematophila ATCC 19061]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTNNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 59/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313
           +T  ILFI  GAF           +VS                          P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRLNVSSGIGFSATVKGESEKATEGQLLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  LN+     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELNEEALIQILQEPKNALTKQYQALFNLEGVELEFRKEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A  A+   +     GAR L++++E VL D  +    ++
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSME 391


>gi|224372109|ref|YP_002606481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia
           profundicola AmH]
 gi|223588882|gb|ACM92618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia
           profundicola AmH]
          Length = 407

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ I + LD Y+IGQ+ AK+ +++A+ N ++R    A    E+   NIL++GPTG GK
Sbjct: 59  LTPKAIKAHLDEYVIGQERAKKIISVAVYNHYKRILFGAKSDVEIQKSNILMIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I+R LA+L   P    + T  TE GYVG +VE ++  L+  A
Sbjct: 119 TLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAA 162



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 172 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKHPNQEFIQI 231

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                 +  P DL     +P
Sbjct: 232 DTSNILFICGGAFDGLEEIIQKRLEGATVGFLGKTKEKLTKDDIFALVEPEDLVKYGLIP 291

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L + D   +LT+ +  LI QY+ L K + + L+F  ++++A+AD A
Sbjct: 292 ELIGRLPVIATLRELGRDDLIRVLTEPKDALIKQYQALFKLDDVELEFEREALEAIADKA 351

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +   +     GAR L+ ++E  + DI F+  + +   ++I
Sbjct: 352 IKRGT-----GARGLRAILEEAMVDIMFNLPEYRGYKIII 386


>gi|328882448|emb|CCA55687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptomyces
           venezuelae ATCC 10712]
          Length = 427

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408


>gi|291520782|emb|CBK79075.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus
           catus GD/7]
          Length = 432

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           FN   P EI + LD+Y+IGQ+ AK+ +++A+ N ++R    A    EL   NI++VGPTG
Sbjct: 59  FNLLKPVEIKNFLDQYVIGQEQAKKVLSVAVYNHYKRIASNAGNDVELQKSNIIMVGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 119 SGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 165



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 60/227 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 234

Query: 292 NTDHILFIASGAF----------------------HVSR-------------PAD----- 311
           +T +ILFI  GAF                      HV               P D     
Sbjct: 235 DTTNILFICGGAFDGLDKIVESRTGGQSIGFNADIHVKEEEQNVSELMKQALPQDFVKYG 294

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV V L  L++     +LT+ +S +I QYK+L + +G+ L+F ++++  +A
Sbjct: 295 LIPEFVGRVPVSVSLDLLDEDALVRVLTEPKSAIIKQYKKLFQLDGVDLEFEDEAVHEIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDA 416
             +   N+     GAR L++++E VL D  F+  + +  EK ++  A
Sbjct: 355 HRSFMRNT-----GARGLRSIVENVLMDTMFTLPSDETVEKCIITKA 396


>gi|196250175|ref|ZP_03148869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
 gi|196210359|gb|EDY05124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
          Length = 262

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 13/78 (16%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFHVSRP 309
           +T +ILFI  GAF    P
Sbjct: 236 DTTNILFICGGAFDGIEP 253


>gi|291528434|emb|CBK94020.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale M104/1]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R  L  D  D EL   NIL++GPTG GK
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T +ILFI  GAF                                    + P D     
Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L++L++     IL + +++LI QY +L + +G+ L+FT+D+++A+A
Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           D A+   +     GAR L+ +ME V+ D+ +   SD      VID + V 
Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402


>gi|291525458|emb|CBK91045.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale DSM 17629]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R  L  D  D EL   NIL++GPTG GK
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T +ILFI  GAF                                    + P D     
Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L++L++     IL + +++LI QY +L + +G+ L+FT+D+++A+A
Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           D A+   +     GAR L+ +ME V+ D+ +   SD      VID + V 
Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402


>gi|253579814|ref|ZP_04857082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848813|gb|EES76775.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 438

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ  AK+A+++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHAVLDDYVIGQDAAKKALSVAVYNHYKRILASKNSDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 57/212 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 177 QYGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPAD---- 311
            I+T +ILFI  GAF                     VS               P D    
Sbjct: 237 QIDTTNILFICGGAFDGIEKIIESRQDTKSIGFGAEVSVKEDRNVGEILKDVMPEDFIKF 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV V L +L+++    IL + +++L  QY  L + +G+ LDF +D+++ +
Sbjct: 297 GLIPEFIGRVPVVVTLDALDENALISILKEPKNSLTKQYHRLFELDGVELDFEDDALELV 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  ++   +     GAR L+ +ME  L D+ +
Sbjct: 357 AKKSLERKT-----GARGLRAIMEGSLMDLMY 383


>gi|238923370|ref|YP_002936886.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
 gi|259491258|sp|C4ZGF5|CLPX_EUBR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238875045|gb|ACR74752.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R  L  D  D EL   NIL++GPTG GK
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T +ILFI  GAF                                    + P D     
Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L++L++     IL + +++LI QY +L + +G+ L+FT+D+++A+A
Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           D A+   +     GAR L+ +ME V+ D+ +   SD      VID + V 
Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402


>gi|228941639|ref|ZP_04104186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228960748|ref|ZP_04122387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228967575|ref|ZP_04128601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228974568|ref|ZP_04135134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|229048189|ref|ZP_04193758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH676]
 gi|229152674|ref|ZP_04280862.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1550]
 gi|228630820|gb|EEK87461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1550]
 gi|228723176|gb|EEL74552.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH676]
 gi|228784971|gb|EEM32984.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792154|gb|EEM39730.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228798964|gb|EEM45939.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228817851|gb|EEM63929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 444

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 89  PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434


>gi|289207759|ref|YP_003459825.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
 gi|288943390|gb|ADC71089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
          Length = 425

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI   LD Y+IGQ  AK+ +++A+ N ++R +  A   D EL   NI+L+GPTG GKT
Sbjct: 67  PREIREILDDYVIGQTSAKKILSVAVYNHYKRLEARAGKDDVELSKSNIMLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 LLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLL 166



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 60/237 (25%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST--------- 286
           ++  EN GIV++DE DK+  +     I   VS EGVQ+ LL L+EG++ S          
Sbjct: 173 VEKAEN-GIVYIDEIDKVSRKSDNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHP 231

Query: 287 --KYGSINTDHILFIASGAFH-----VSRPAD---------------------------- 311
             ++  ++T +ILFI  GAF      + + A+                            
Sbjct: 232 QQEFLQVDTRNILFICGGAFSGLEKIIQQRAEKGGIGFSAELSSKDESKSGGQWLKQLEA 291

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV+  L  L++     ILT  ++ L+ QY  L + EG+ L+F +
Sbjct: 292 DDLVRYGLIPEFVGRLPVQATLDELDEDALITILTQPKNALVKQYARLFEMEGVELEFRD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L+T+ME +L D  +    ++    VVID   +R
Sbjct: 352 DALAAIAHKAMERKT-----GARGLRTIMENILLDTMYELPSMEGVSKVVIDEAVIR 403


>gi|225551973|ref|ZP_03772913.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp.
           SV1]
 gi|225370971|gb|EEH00401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp.
           SV1]
          Length = 430

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKESV 397



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|167624685|ref|YP_001674979.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
 gi|189044151|sp|B0TLU8|CLPX_SHEHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167354707|gb|ABZ77320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
          Length = 425

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNATPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 64/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGTGIGFGAEVKGEADKKSISDTLLQVEPEDLVKF 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+      IL++ ++ +  Q+  L + E + L+F +D++ A+
Sbjct: 300 GLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A     L +     GAR L++++E +L DI +   S  D+ +  VVID   V+
Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTDDVAK--VVIDESVVK 405


>gi|229098946|ref|ZP_04229881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-29]
 gi|229117975|ref|ZP_04247335.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-3]
 gi|228665424|gb|EEL20906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-3]
 gi|228684444|gb|EEL38387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-29]
          Length = 419

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409


>gi|251798424|ref|YP_003013155.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paenibacillus
           sp. JDR-2]
 gi|247546050|gb|ACT03069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. JDR-2]
          Length = 418

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I + LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NILLVGPTG GKT
Sbjct: 64  PKDIRAILDSYVIGQEFAKKSLSVAVYNHYKRINSQSKIEDVELQKSNILLVGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   +  P DLL    
Sbjct: 236 DTTNILFICGGAFDGLESLIKRRIGKKVIGFSSTGEVQKDLKPGEYLSMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL++ ++ L+ QY++L++ + + LDF   +++A+A 
Sbjct: 296 IPEFVGRLPVISTLEPLDEAALMRILSEPKNALVKQYQKLLEMDNVKLDFEPAALEAIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLEVMY 380


>gi|237755490|ref|ZP_04584112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692354|gb|EEP61340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 408

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R   ++L  D   E+   NILL+GPTG 
Sbjct: 58  TPAEIKAKLDEYVIGQERAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLIGPTGS 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 118 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 163



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GIV++DE DKI A+ SG+   ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 173 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 231

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            I+T +ILFI  GAF                                 + +P DL+    
Sbjct: 232 QIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFGADIKSKSEEKDLLSLVQPEDLIKFGL 291

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     +LT+ ++ LI QYK L+  +GI L+FTED++  +A 
Sbjct: 292 IPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALRKIAR 351

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+ ++E ++ D+ + A + +  K V+ID + V
Sbjct: 352 EAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVV 394


>gi|297194376|ref|ZP_06911774.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720966|gb|EDY64874.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 429

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDLPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITRDVVRNNV 408


>gi|238759261|ref|ZP_04620428.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238791432|ref|ZP_04635070.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
 gi|238702548|gb|EEP95098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238729048|gb|EEQ20564.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+   +     GAR L++++E  L D  +   + D  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398


>gi|288920829|ref|ZP_06415127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
 gi|288347788|gb|EFC82067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
          Length = 431

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVGP 61
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q         A    EL   NILL+GP
Sbjct: 64  PREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGSSSSGDAAKSEVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313
           +T ++LFI  GAF        SR                            P DLL    
Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDSSDVFGDIMPEDLLKYGM 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   + +L++     ILT+ ++ L+ QYK L + +G+ LDFT D+++A+AD
Sbjct: 302 IPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLLSVMY 386


>gi|88705173|ref|ZP_01102885.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter
           litoralis KT71]
 gi|88700868|gb|EAQ97975.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter
           litoralis KT71]
          Length = 375

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQQ AK+ +++A+ N ++R +      D  EL   NILLVGPTG GK
Sbjct: 16  PVEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSDDVELGKSNILLVGPTGSGK 75

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 76  TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 116



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 129 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 188

Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADL---- 312
           +T  ILFI  GAF                      H                P DL    
Sbjct: 189 DTSSILFICGGAFAGLDKVIRDRSEKGGIGFGAEVHSKDATRNVGEVLFDLEPEDLVQYG 248

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+      ILT+ +++L  QY +L + E + +DF ED + A+A
Sbjct: 249 LIPEFVGRLPVIATLEELDVPALVQILTEPKNSLTKQYSKLFEMEDVEIDFREDGLRAVA 308

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   +     GAR L++++E VL D  +S    ++   VV+D   +R
Sbjct: 309 EKAMERKT-----GARGLRSILEGVLLDTMYSIPSREDVAKVVVDESVIR 353


>gi|238788009|ref|ZP_04631805.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
 gi|238723957|gb|EEQ15601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
          Length = 423

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRINTGSGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+   +     GAR L++++E  L D  +   + D  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398


>gi|322435044|ref|YP_004217256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX9]
 gi|321162771|gb|ADW68476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX9]
          Length = 428

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+E+ + LD Y+IGQ   K+ +A+A+ N ++R Q+     +  EL   NILLVGPTG GK
Sbjct: 69  PQEVRASLDEYVIGQDQTKKKLAVAVYNHYKRIQMNKTRGNDVELAKSNILLVGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 129 TLLAQTLAKVLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 67/245 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL L+EG+  +            ++ ++
Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPHQEFTAV 241

Query: 292 NTDHILFIASGAF-------------------------------------------HVSR 308
           +T +ILFI  GAF                                             + 
Sbjct: 242 DTTNILFICGGAFVGLEKVIGRRVGKKALGFKTLTDAEKLDGDVTPIRAQRDAELLRQAE 301

Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DLL     PE  GR PV   L  L++     ILT  ++ ++ QY +L   EG+ + FT
Sbjct: 302 PQDLLKYGLIPEFVGRLPVMGVLDELDEVALIEILTKPKNAILKQYIKLFDFEGVKVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422
           +D+   +A  A+        +GAR L+ ++E ++ D+ +    + + K + I AE V+ H
Sbjct: 362 DDAAREIAREALQRK-----VGARGLRMILEELMLDLMYYVPGNKKVKELSITAEMVKKH 416

Query: 423 IGDFP 427
               P
Sbjct: 417 SLTLP 421


>gi|293392544|ref|ZP_06636864.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
 gi|291424946|gb|EFE98155.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
          Length = 437

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 80  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 133

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 134 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 192



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 193 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 252

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 253 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGEAEKATEGELLLQAEPEDLIKF 312

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 313 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALNAI 372

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +     VVID
Sbjct: 373 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 413


>gi|229062167|ref|ZP_04199491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH603]
 gi|228717150|gb|EEL68826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH603]
          Length = 419

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409


>gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
 gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
          Length = 424

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 68  TPGDICQVLDDYVIGQLKAKRILSVAVHNHYKRLAHGQKNNDVELAKSNILLIGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 128 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 241 DTTNILFICGGAFSGLEKIISNRSRGSSIGFGADVRAPDDRRTGEVLREVEPEDLLKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L +     ILT  ++ L+ QY+ L + E + L+F +D++ A+A 
Sbjct: 301 IPEFVGRLPVLATLEDLEEDALVDILTKPKNALVKQYQRLFEMEDVRLEFRDDALRAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A++  +     GAR L+++ME +L D  +    L
Sbjct: 361 KAIDRKT-----GARGLRSIMENILLDPMYDLPQL 390


>gi|315221693|ref|ZP_07863609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
 gi|315189180|gb|EFU22879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
          Length = 410

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  DE    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL + ++ L+ QY+ L+  + + L+F +D++  +A+ A
Sbjct: 299 ELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381


>gi|229019697|ref|ZP_04176504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1273]
 gi|228741604|gb|EEL91797.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1273]
          Length = 419

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379


>gi|329934562|ref|ZP_08284603.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329305384|gb|EGG49240.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 428

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFQDVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V  ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408


>gi|262373454|ref|ZP_06066732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
 gi|262311207|gb|EEY92293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
          Length = 436

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R    Q   A    E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQTHHAHQDIEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQK 177



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 160/391 (40%), Gaps = 102/391 (26%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151
           I  + VDV +++V+ S++ E  + A+  +     I  AL    +G+     T  V     
Sbjct: 32  ICNECVDVCLDLVQTSQQVEAGDWATKPLPKPHEIRAALDQYVIGQDLAKKTLSVAVYNH 91

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K+L+ G+      DIE+A      SN  + G    G   L++  ++++           
Sbjct: 92  YKRLKVGQTHHAHQDIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258
                P  M D +  L +   V  D   +V+               GI+++DE DKI  +
Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305
                I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF 
Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFS 251

Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325
                         +   AD                          L+PE  GR PV   
Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  L++     ILT+ ++ L  QY+ L   E + L F E ++ A+A  A+  N+     G
Sbjct: 312 LDELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFDESALRAVAKKALERNT-----G 366

Query: 386 ARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           AR L++++E VL +  +     ++  TV++D
Sbjct: 367 ARGLRSILENVLLETMYDLPSRKDVGTVIVD 397


>gi|253990890|ref|YP_003042246.1| ATP-dependent protease ATP-binding subunit ClpX [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782340|emb|CAQ85504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   D+ +  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKRLR-NGDVSNGVELGKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 125 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTSTGIGFGAKVKGESEKATEGELLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F  +++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRAEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+     V   GAR L++++E  L D  +
Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMY 385


>gi|296413162|ref|XP_002836285.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630098|emb|CAZ80476.1| unnamed protein product [Tuber melanosporum]
          Length = 451

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 24/177 (13%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSS--VSTKY----GSINTDHIL 297
           GIV LDEFDKI    S  G   +S EGVQ+ LL ++EG++  ++TK     G +  D I 
Sbjct: 222 GIVCLDEFDKIAKPKSPYGSKDISGEGVQQALLKIIEGTTLQINTKPERPGGGLTPDLIS 281

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           F             L+PEI GR P+   ++SL++     +LT+  + L+ QY EL    G
Sbjct: 282 F------------GLIPEIVGRIPIIAAVESLDEDMLVRVLTEPRNALLKQYTELFALSG 329

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           + L FT  ++  +A  A+ +N+     GAR L+TVMER+L D  F +     + V++
Sbjct: 330 VELRFTSPALRQIAKSAIAMNT-----GARGLRTVMERILSDAMFESPGSSIRYVLV 381



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 45/150 (30%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------------PAD 46
             +PR +   LDR+++GQ   KR ++ A+ + ++R Q                    P  
Sbjct: 63  KLTPRALKQHLDRFVVGQNRPKRILSTAIYHHYKRTQQLQQRQEEQDELFRSSQAMGPQS 122

Query: 47  LRDEL--MPK------------------------NILLVGPTGVGKTAISRRLARLAGAP 80
           L +E+   P+                        N+L +GPTGVGKT + R LAR+   P
Sbjct: 123 LDEEISHQPRTVHVPPRGDRASIYDFSPLTIEKSNVLCLGPTGVGKTLMLRTLARVLEVP 182

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F   + T FT+ GYVG + +  I  L+  A
Sbjct: 183 FSMSDCTPFTQAGYVGEDADVCIHRLLAAA 212


>gi|222151555|ref|YP_002560711.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus
           caseolyticus JCSC5402]
 gi|222120680|dbj|BAH18015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus
           caseolyticus JCSC5402]
          Length = 421

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P E+++ LD Y+IGQ  AK+A+A+A+ N ++R   P +  D  E+   NI L+GPTG GK
Sbjct: 65  PHEMMALLDAYVIGQDKAKKALAVAVYNHYKRIFNPLNDEDGVEIQKSNIALIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 TLLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 168



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQI 237

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                   +P DL     +P
Sbjct: 238 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFTGIKEQGIDEATLLSQIKPEDLQSYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ L+    + ILT  ++ L+ QYK++++ + + L+FT++++ A++++A
Sbjct: 298 EFIGRIPVVANLEQLDVGALKNILTQPKNALVKQYKKMLEIDDVTLEFTDEALTAISELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +   +     GAR L++++E  + ++ FS  S    K V+I  E + 
Sbjct: 358 IERKT-----GARGLRSIIEESMLEVMFSIPSRTDVKKVIITKETIE 399


>gi|194017051|ref|ZP_03055663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           pumilus ATCC 7061]
 gi|194010919|gb|EDW20489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           pumilus ATCC 7061]
          Length = 421

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ++AK+++A+A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ QY ++++ + + L+F ED++  +A  
Sbjct: 296 PEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEEDALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGA 395


>gi|157693224|ref|YP_001487686.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus pumilus
           SAFR-032]
 gi|167008658|sp|A8FFV9|CLPX_BACP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157681982|gb|ABV63126.1| ATP dependent protease ATP-binding subunit [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ++AK+++A+A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ QY ++++ + + L+F ED++  +A  
Sbjct: 296 PEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEEDALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   + D  EK V     V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGESPRLVLKD 409


>gi|311896030|dbj|BAJ28438.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Kitasatospora setae KM-6054]
          Length = 428

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PREI   LD+Y++GQ  AK+A+++A+ N ++R Q     R         EL   NILL+G
Sbjct: 64  PREIYEFLDQYVVGQDLAKKALSVAVYNHYKRVQAGEAGRSGSGRDDAIELAKSNILLLG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 183 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312
           +T ++LFI  GAF                                H  +  P DL     
Sbjct: 243 DTTNVLFIVGGAFAGLERIIEGRAGAKGIGFGATIRSKREVDSADHFRQVMPEDLVKFGM 302

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     ILT+ ++ L+ QY++L + +G+ L+FT D+++A+AD
Sbjct: 303 IPEFIGRLPVITSVHNLDREALLQILTEPKNALVKQYRKLFELDGVELEFTRDALEAIAD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+ L  T    GAR L+ +ME VL  + +     Q+   VV+  + V  H
Sbjct: 363 QAI-LRGT----GARGLRAIMEEVLMSVMYEVPSRQDVARVVVTGDVVSKH 408


>gi|293606139|ref|ZP_06688504.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292815594|gb|EFF74710.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 432

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 103/390 (26%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+ +      V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQNSPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326
               V R                              P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD    ++ A+A  A+   +     GA
Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDLRPAALKAIARKALKRKT-----GA 368

Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           R L++++E+ L D  +   S    K VV+D
Sbjct: 369 RGLRSIIEQTLLDTMYELPSQGNVKRVVVD 398


>gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
 gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
          Length = 423

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKR------LRNGDTNNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313
           +T  ILFI  GAF           +VS                          P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVISQRLNVSSGIGFSATVKGESEKATEGELLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEDALIQILQEPKNALTKQYQALFNLEGAELEFRKEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+   +     GAR L++++E VL D  +
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMY 385


>gi|269102130|ref|ZP_06154827.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162028|gb|EEZ40524.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 392

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 33  TPQEIRHNLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTNSDGVELGKSNILLIGPTGSG 92

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 93  KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 134



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 147 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 206

Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312
           +T  ILFI  GAF                            SR          P DL   
Sbjct: 207 DTSKILFICGGAFAGLDKVIEQRVATNTGIGFGAEVRSKDESRTLTDLFLQVEPEDLVKF 266

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + EG  L+F +D++ A+
Sbjct: 267 GLIPEFIGRLPVTATLTELDEDALVQILREPKNALTKQYGALFELEGAELEFRDDALVAI 326

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +     +    VVID   ++
Sbjct: 327 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSTKGVSKVVIDESVIK 372


>gi|325300152|ref|YP_004260069.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
 gi|324319705|gb|ADY37596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
          Length = 414

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIERKIAQRLNTHVVGYGAAKETVNIDRKNLMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L+++  R ILT+ ++++I QY +L + +G+ L F  +  + + D 
Sbjct: 299 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLTFEPEVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A+        +GAR L++++E ++ D  F     +  T  +  +Y +  +G
Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDTMFEVPSHKIDTFTVTLDYAKEQMG 404



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD+Y+IGQ  AKR +++A+ N ++R   P    D E+   NI++VG TG GKT
Sbjct: 67  PKDIKEFLDQYVIGQDSAKRYLSVAVYNHYKRLLQPESKDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ R
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 178


>gi|283955698|ref|ZP_06373189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792653|gb|EFC31431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 407

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRYIIGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYIIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394


>gi|322834045|ref|YP_004214072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
 gi|321169246|gb|ADW74945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
          Length = 424

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRQHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTNTGIGFGAEVKGKEQKATEGQLLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  LN+     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELNEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+     +   GAR L++++E  L D  +    L++ + VVID
Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSLEDVEKVVID 399


>gi|37523765|ref|NP_927142.1| ATP-dependent protease ATP-binding subunit ClpX [Gloeobacter
           violaceus PCC 7421]
 gi|46576419|sp|Q7NDN9|CLPX_GLOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|35214770|dbj|BAC92137.1| clpX [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P+EI S LD+++IGQQ+AK+ +++A+ N ++R  L + L +     E+   NILL+GPTG
Sbjct: 79  PQEIKSYLDQHVIGQQEAKKILSVAVYNHYKR--LSSKLEESGDEVEIQKSNILLIGPTG 136

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ VA   V  ++R
Sbjct: 137 CGKTLLAQTLADLLDVPFAIADATTLTEAGYVGEDVENILLRLLQVADGEVERAQR 192



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 193 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQEYIQI 252

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILF+  GAF                                       P DL    
Sbjct: 253 DTANILFVCGGAFVGLERVVEQRIGKRAMGFVQAGEPQKREQRLVESLKALEPDDLVKFG 312

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   L+ L++     ILT+ ++ L+ QY+ L++ +G+ + F  D+I  +A
Sbjct: 313 LIPEFIGRIPMVAVLEPLDEEALIEILTEPKNALLKQYQRLLRMDGVEMVFEPDAIKTIA 372

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ ++ +
Sbjct: 373 QEAFRRKT-----GARALRGIVEELMLEVMY 398


>gi|157962501|ref|YP_001502535.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
 gi|189044152|sp|A8H613|CLPX_SHEPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157847501|gb|ABV88000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
          Length = 425

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLR-NASPKDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 64/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILF+  GAF           HV                           P DL   
Sbjct: 240 DTSKILFVCGGAFAGLEKVIEQRAHVGTGIGFGAQVKGEADKKTISDTLLEVEPEDLVKF 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+      IL++ ++ +  Q+  L + E + L+F +D++ A+
Sbjct: 300 GLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A     L +     GAR L++++E +L DI +   S  D+ +  VVID   V+
Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTDDVAK--VVIDESVVK 405


>gi|300741665|ref|ZP_07071686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           dentocariosa M567]
 gi|300380850|gb|EFJ77412.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           dentocariosa M567]
          Length = 431

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 59/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG------- 289
            +GI+++DE DKI AR  G  + ++R    EGVQ+ LL ++EG+  +V  + G       
Sbjct: 179 QHGIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHPAHT 237

Query: 290 --SINTDHILFIASGAFH------VSR--------------------------PADL--- 312
              I T +ILFI +GAF       ++R                          P DL   
Sbjct: 238 NLEIETSNILFIVAGAFDGLEDRILARTDRTSIGFGAELTAAPDTDQTLSQIMPEDLTHY 297

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   LK L   +   ILT  ++ L+ QYK L   +G+ L F +D++ A+
Sbjct: 298 GIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFALDGVELIFEDDALHAV 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           A++A    +     GAR L+++ME +L+ I F   D Q+ T VVI  + VR
Sbjct: 358 AELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVVITEDTVR 403



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRD--ELMPK 54
           +PREI S L  Y+IGQ  AKR +A+A+ N ++R           + L A   +  +L   
Sbjct: 56  TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIYDLNNPVLHSRTLSATAGESVDLGKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L++ A
Sbjct: 116 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAA 171


>gi|289641546|ref|ZP_06473708.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
 gi|289508641|gb|EFD29578.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
          Length = 430

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q      D     EL   NILL+GPTG
Sbjct: 64  PREIYEFLDSYVVGQEQAKKILSVAVYNHYKRVQAGGAGGDAKGDVELAKSNILLLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 CGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI  GAF          + +                         P DLL    
Sbjct: 240 DTTNVLFIVGGAFAGLDRIIDARIGKKSLGFRAVLHGKDDPDAAKVFSDVMPEDLLKYGM 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   + +L++     ILT+ ++ L+ QYK+L + +G+ LDFT D++DA+AD
Sbjct: 300 IPEFIGRLPMITSVSNLDREALIRILTEPKNALVRQYKKLFELDGVDLDFTADALDAIAD 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLLSVMY 384


>gi|256847017|ref|ZP_05552463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715681|gb|EEU30656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 416

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64
           +P EI+ +LD Y+IGQ +AK+ +++A+ N ++R    +  D  D EL   NI ++GPTG 
Sbjct: 63  TPAEIMKQLDDYVIGQGEAKKTLSVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 60/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 238 DTKNILFIVGGAFDGIESIVKERLGDKTIGFGTDSKEADQVNEKNILQHVI-PEDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  L FT+ ++  +A
Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSKLRFTDGALREMA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
            +A+  N+     GAR L++++E V+ D+ F     Q+ + VVID   V  H
Sbjct: 357 KLAIARNT-----GARGLRSIIEGVMRDVMFDLPSRQDVSEVVIDKNCVEHH 403


>gi|56421187|ref|YP_148505.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus
           kaustophilus HTA426]
 gi|261418332|ref|YP_003252014.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp.
           Y412MC61]
 gi|297529184|ref|YP_003670459.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. C56-T3]
 gi|319767709|ref|YP_004133210.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC52]
 gi|61211380|sp|Q5KWJ9|CLPX_GEOKA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56381029|dbj|BAD76937.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Geobacillus kaustophilus HTA426]
 gi|261374789|gb|ACX77532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC61]
 gi|297252436|gb|ADI25882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. C56-T3]
 gi|317112575|gb|ADU95067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC52]
          Length = 421

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +G+ L+F E ++  +A  
Sbjct: 296 PEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A+   +     GAR L++++E ++ D+ F   S  D+Q+  + +D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITLD 395


>gi|50120088|ref|YP_049255.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           atrosepticum SCRI1043]
 gi|61211478|sp|Q6D826|CLPX_ERWCT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49610614|emb|CAG74059.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 424

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313
           +T  ILFI  GAF                                     HV  P DL+ 
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKATEGELLSHV-EPGDLIK 297

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A
Sbjct: 298 FGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTA 357

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +A  A+     V   GAR L++++E  L +  +    L+    VVID   +  H
Sbjct: 358 IAKKAM-----VRKTGARGLRSIVEAALLETMYDLPSLESVDKVVIDESVIAGH 406


>gi|157369339|ref|YP_001477328.1| ATP-dependent protease ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
 gi|167009020|sp|A8GAR0|CLPX_SERP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157321103|gb|ABV40200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
          Length = 423

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++++A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +     VVID
Sbjct: 359 ARKAMKRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 399


>gi|322379412|ref|ZP_08053782.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
 gi|322380886|ref|ZP_08054965.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5]
 gi|321146690|gb|EFX41511.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5]
 gi|321148121|gb|EFX42651.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
          Length = 434

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EG+  +VS K G          I
Sbjct: 196 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQI 255

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T +ILFI  GAF                                H+  P DL+     P
Sbjct: 256 DTTNILFICGGAFDGIIDVIKRRIHSNVLGFGNEKKTKEELEDILHLVEPEDLISYGLIP 315

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   LK ++K     IL   ++ LI QY+ L K +G+ L F E++++ +A++A
Sbjct: 316 ELIGRLPVISTLKPISKEAMVDILQKPKNALIKQYQALFKMDGVELIFEEEAVEEIANLA 375

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +        +GAR L+ ++E    DI F   +L++  V+I  E V
Sbjct: 376 IKRK-----VGARGLRAIIESFGLDIMFDLPNLKDYQVIITKECV 415



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 23/220 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61
           SP+ +   LD Y+IGQ+DAKR +++A+ N ++R     + RD      E+   NILLVGP
Sbjct: 79  SPKLLKEALDHYVIGQEDAKRVLSVAVYNHYKRLHY-QETRDSNTQEVEISKSNILLVGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  +   V  +++  
Sbjct: 138 TGSGKTLMAQTLARFLNVPIAISDATSLTEAGYVGEDVENILTRLLQASDGDVERAQKGI 197

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVAD 171
              DE+ + A ++    I   + G+       ++    +     + G     E  +++ D
Sbjct: 198 VFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQI-D 256

Query: 172 TSSDISNFDIPGGASVGILNLSE--LFSKVMGSGRKKKIR 209
           T++ +    I GGA  GI+++ +  + S V+G G +KK +
Sbjct: 257 TTNILF---ICGGAFDGIIDVIKRRIHSNVLGFGNEKKTK 293


>gi|319760382|ref|YP_004124320.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039096|gb|ADV33646.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 431

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 14/115 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELM 52
           F+PR+I + LD YIIGQ+ AK+ +++A+ N ++R +      D              EL 
Sbjct: 68  FTPRDIGNYLDSYIIGQECAKKILSVAIYNHYKRLKYQNQKFDKNANKINDNYGGDIELF 127

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             NILLVGPTG GKT ++  LAR    PF   + T  TE GYVG +VE +I+ L+
Sbjct: 128 KSNILLVGPTGSGKTLLAETLARFLEVPFAISDATTLTEAGYVGEDVENVIQKLL 182



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  K G          +
Sbjct: 195 GIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTIASIPPKGGRKHPQQEFIKL 254

Query: 292 NTDHILFIASGAF-------------------HV-----------------SRPADLL-- 313
           +T +ILFI  G+F                   H                    P DL+  
Sbjct: 255 DTTNILFICGGSFFGLNKIIEQRISEKRTIGFHTFPRMKVNKDFEYALLDKVEPEDLIKF 314

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFP+   L  L + +   ILTD ++ LI QYK L   + I L+F+E S++A+
Sbjct: 315 GLIPEFIGRFPIISVLDELKEYELIKILTDPKNALIKQYKTLFNLDKIELEFSEASLNAI 374

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A  A+N  S     GAR L+T++E +L D  ++  S  + + VVI+++ V
Sbjct: 375 AKYAINKQS-----GARGLRTILENILLDTMYNLPSQNKVRKVVINSQVV 419


>gi|21672725|ref|NP_660792.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008300|sp|Q8K989|CLPX_BUCAP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21623369|gb|AAM68003.1| ATP-dependent Clp protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 427

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVG 60
           L++  +P EI   LD Y+IGQ   K+ +++A+ N ++R +  +  +D  EL   NILL+G
Sbjct: 62  LSYLPTPHEIKKHLDNYVIGQNHTKKVLSVAVYNHYQRIRNVSKNKDNVELGKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 122 PTGSGKTLLAETLAKLLNVPFSIADATTLTEAGYVGEDVENVIQKLL 168



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 60/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           NT +ILFI +GAF      +S+  D                                   
Sbjct: 241 NTANILFICAGAFSELSKIISKRIDTGNTIGFNCNLKKQKKKKSEQYFLQQVQSKDLIKF 300

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   LK LN++    IL   ++ LI QY+ L   E + L+FT++++ ++
Sbjct: 301 GLIPEFIGRLPIITILKELNETALVQILCKPKNALIKQYQTLFNLEKVKLEFTKEAVTSI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           A  A++  +     GAR L++++E +L DI +    ++  + ++ID   V  H
Sbjct: 361 AKKALSKKT-----GARGLRSIIENILLDIMYELPSMKNVEKILIDESVVNSH 408


>gi|332664755|ref|YP_004447543.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333569|gb|AEE50670.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K   +
Sbjct: 189 GIVYIDEIDKIARKGDNPSITRDVSGEGVQQALLKMLEGTDVNVPPQGGRKHPEQKLVKV 248

Query: 292 NTDHILFIASGAFH-----VSRPAD--------------------------------LLP 314
           NT++ILFI  GAF      ++R  +                                L+P
Sbjct: 249 NTENILFICGGAFDGIEKIIARRVNTQVIGFKASEKERIDRDNLLQYITHQDLKGFGLIP 308

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV  +L  L+    + IL++  ++L+ QY++L + EGI L F +D+I+ +A  A
Sbjct: 309 ELIGRLPVLTYLDPLDLPTLKRILSEPRNSLLRQYQKLFELEGIELSFADDAIEFIATKA 368

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           +  N     +GAR L+++ E ++ D  F      + + ++IDA+Y
Sbjct: 369 LEFN-----LGARGLRSICEAIMTDAMFELPSTPDVRKLMIDADY 408



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 6/112 (5%)

Query: 3   LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILL 58
             FN   +P++I   LD+Y+IGQ DAK+ +++A+ N ++R  Q +  D+  E+   NI+L
Sbjct: 70  FQFNPAITPKDIKVHLDQYVIGQDDAKKFLSVAVYNHYKRLGQHISDDV--EIEKSNIVL 127

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VG TG GKT +++ +A+    PF  V+ T FTE GYVG +VE I+  L+ V 
Sbjct: 128 VGRTGTGKTLLAKTIAKYLNVPFAIVDATVFTEAGYVGEDVESILSRLLQVC 179


>gi|293391573|ref|ZP_06635907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952107|gb|EFE02226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 410

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 61  TPHQIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 121 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 161



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          I
Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 233

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 234 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 293

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT +++ A+
Sbjct: 294 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAM 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  K VV++
Sbjct: 354 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVN 394


>gi|253996689|ref|YP_003048753.1| ATP-dependent protease ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
 gi|253983368|gb|ACT48226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
          Length = 426

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 6/106 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDE--LMPKNILLVGP 61
           +P+EI   LD+Y+IGQ  AK+ +A+A+ N ++R           +DE  +   NILL+GP
Sbjct: 65  TPQEICKILDQYVIGQTQAKKNLAVAVYNHYKRLGHNNLANGGQKDEVEIAKSNILLIGP 124

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 125 TGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 170



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 62/237 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQL 242

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T +ILFI  GAF                     V   AD                    
Sbjct: 243 DTTNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKSKADVREVGAVLRDVEPEDLIKFG 302

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+SL+++    ILT+ ++ L  QY +L K EG+ L+F E ++  +A
Sbjct: 303 LIPEFIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVDLEFRESALLLIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
             A+   +     GAR L+++ME  L ++ +    L+    VVID   +R   GD P
Sbjct: 363 KKALERKT-----GARGLRSIMEHSLLEVMYELPSLKNLSKVVIDDGVIR---GDSP 411


>gi|257865954|ref|ZP_05645607.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC30]
 gi|257872287|ref|ZP_05651940.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC10]
 gi|257875581|ref|ZP_05655234.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC20]
 gi|257799888|gb|EEV28940.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC30]
 gi|257806451|gb|EEV35273.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC10]
 gi|257809747|gb|EEV38567.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC20]
          Length = 417

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+E+++ L+ Y+IGQ  AKR +A+A+ N ++R  +     D EL   NI L+GPTG GKT
Sbjct: 67  PQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 169



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 57/235 (24%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289
           +++M E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 172 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 230

Query: 290 ------SINTDHILFIASGAFHVSR--------------------------------PAD 311
                  I+T +ILFI  GAF                                    P D
Sbjct: 231 PHQEMIQIDTTNILFIVGGAFDGIETIVKNRLGEKTIGFGTNNKRLEEGESVMQQIIPED 290

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           LL     PE  GR PV   L+ L   D   ILT+ ++ L+ QY++LM  +   L+F  ++
Sbjct: 291 LLKFGLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTELEFEPEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + A+A  A+  N+     GAR L++++E ++ D+ F+  SD   + V I  E  +
Sbjct: 351 LRAIAAQAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIQKVTITEEAAK 400


>gi|119774362|ref|YP_927102.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
 gi|166215200|sp|A1S4X6|CLPX_SHEAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119766862|gb|ABL99432.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 66  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLR-NAGPKDGVELGKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 239 DTSKILFICGGAFAGLEKVIEQRTHTGSGIGFGAQVKGKEEKESMSDILSQVEPEDLVKY 298

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL++ ++ L  QY  L + E + L+F ED++ A+
Sbjct: 299 GLIPEFIGRLPVVATLAELDEDALIQILSEPKNALTKQYAALFEMENVELEFREDALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 359 AQKAMSRKT-----GARGLRSIVEGILLDTMY 385


>gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTSTGIGFSAKVKGESEKATEGELLAQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F  +++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRSEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+     V   GAR L++++E  L D  +    ++    VV+D   V
Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMYDLPSMENVGKVVVDESVV 403


>gi|253687444|ref|YP_003016634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259491264|sp|C6DB56|CLPX_PECCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|251754022|gb|ACT12098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    L+    VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVID 399


>gi|228478308|ref|ZP_04062916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
 gi|228249987|gb|EEK09257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
          Length = 408

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+E++  L+ Y++GQ  AKRA+A+A+ N ++R        D   +L   NIL++GPTG G
Sbjct: 63  PKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D+++A+A  A
Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIATKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F     ++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390


>gi|187478000|ref|YP_786024.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella avium
           197N]
 gi|123515222|sp|Q2L255|CLPX_BORA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115422586|emb|CAJ49111.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella avium
           197N]
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI S LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPVEIKSFLDQYVIGQTGPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 168/398 (42%), Gaps = 111/398 (27%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAE-------ERILDA-LVGKTATSNTREV--- 150
           I  + +D+  +I+RE  +   R  A+I +E       +  LD  ++G+T       V   
Sbjct: 36  ICDECIDLCNDIIREEAQATAR--AAIRSELPTPVEIKSFLDQYVIGQTGPKRMLAVAVY 93

Query: 151 -FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              K++R GEI   E+++         SN  + G    G   L++  ++++         
Sbjct: 94  NHYKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN-------- 138

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIV 256
                  P +M D +  L +   V  D   +++      NY        I+++DE DKI 
Sbjct: 139 ------VPFVMADAT-TLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKIS 191

Query: 257 ARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGA 303
            +     I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GA
Sbjct: 192 RKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGA 251

Query: 304 FH----------------------------------VSRPADLL-----PEIQGRFPVRV 324
           F                                    + P DL+     PE+ GR PV  
Sbjct: 252 FDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFGEAEPEDLIKFGLIPELVGRLPVVA 311

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L  L+++    ILT+ ++ LI Q+++L   E   LD   D++ A+A  A+   +     
Sbjct: 312 TLDELDEAALVQILTEPKNALIKQFQKLFAMESAELDIRPDALHAIARKALQRKT----- 366

Query: 385 GARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           GAR L++++E  L D  +   +A ++  + VV+DA  +
Sbjct: 367 GARGLRSILESALLDTMYDLPTAGNI--RRVVVDANVI 402


>gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 439

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R     ++  ++   NIL+VGPTG GK
Sbjct: 68  LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTSCQNMDVDVQKSNILMVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQSA 171



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 180 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 239

Query: 291 INTDHILFIASGAF---------HVS-------------------------RPADL---- 312
           I+T +ILFI  GAF          +S                          P DL    
Sbjct: 240 IDTTNILFICGGAFDGLEKIVEQRISAGSIGFNAEVVNKNDNDIDDLLRKVEPKDLTKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L+SL K     IL++ ++ L  QY++L + + + L+FT +++D +A
Sbjct: 300 LIPEFIGRVPVMVSLQSLTKDAMVRILSEPKNALTRQYQKLFELDNVKLEFTREALDEIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV+       IGAR L++++E V+ D+ +
Sbjct: 360 QLAVDRK-----IGARGLRSILETVMMDLMY 385


>gi|160947716|ref|ZP_02094883.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270]
 gi|158446850|gb|EDP23845.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270]
          Length = 414

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD YII Q +AK+A+++A+ N ++R     +   E+   NILLVGPTG GKT
Sbjct: 65  TPVEIKKILDEYIIQQDNAKKALSVAVYNHYKRINRDVESEVEIQKSNILLVGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE II  LV  A
Sbjct: 125 LLAQTLAKVLDVPFAIADATTLTEAGYVGEDVENIILKLVQAA 167



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 57/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  K         Y  +
Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQSLLKIIEGTVSNVPPKGGRKHPDQQYIQV 236

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  GAF                                     RP DLL    
Sbjct: 237 DTTNILFIVGGAFQGIESILKARLEKKSMGFGADVKTDKLDDFSEIIKNLRPEDLLKYGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SLN++    IL + ++ LI QYKEL+  + I L+F +D+I  +A 
Sbjct: 297 IPEFVGRIPMIVTLESLNENSLIRILEEPKNALIKQYKELLSMDNIELEFEKDAIKEIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+   +     GAR L+ V+E  L D  F+
Sbjct: 357 IALERKT-----GARGLRAVIESALLDTMFT 382


>gi|86739914|ref|YP_480314.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. CcI3]
 gi|123751353|sp|Q2JDQ7|CLPX_FRASC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86566776|gb|ABD10585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp.
           CcI3]
          Length = 428

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q      D      EL   NILL+GPT
Sbjct: 64  PREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSSGDGSKGEVELAKSNILLLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T ++LFI  GAF        SR                            P DLL    
Sbjct: 241 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDGSDVFGDIMPEDLLKYGM 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     ILT+ ++ L+ QYK L + + + LDFT D+++A+AD
Sbjct: 301 IPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VV+  E V  H+
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLSVMYDIPSRKDVARVVVTREVVLEHV 407


>gi|312134618|ref|YP_004001956.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor owensensis OL]
 gi|311774669|gb|ADQ04156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor owensensis OL]
          Length = 433

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313
           +T +ILFI  GAF                                + R   P DLL    
Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +++++A+AD
Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIAD 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            A+  N+     GAR L+ +ME ++ D+ F   ++D  EK ++  A  ++
Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167


>gi|119945202|ref|YP_942882.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii
           37]
 gi|229484080|sp|A1SUW8|CLPX_PSYIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119863806|gb|ABM03283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Psychromonas
           ingrahamii 37]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ  AK+ +++A+ N ++R +  A + D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRDNLDDYVIGQDTAKKVLSVAVYNHYKRLKHGA-ISDGVELSKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  +ARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 125 KTLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLL 166



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 60/228 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYG 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++ 
Sbjct: 177 QHGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFI 236

Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313
            ++T  ILFI  GAF                               +S       P DL+
Sbjct: 237 QVDTSKILFICGGAFSGLDSVIEQRVDTGTGIGFGATVRDKDSKATISETFQKVLPQDLI 296

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++     ILT  ++ +  QY  L   E + L+F E+++ 
Sbjct: 297 KYGLIPEFIGRLPVVATLTELDEHALVEILTAPKNAITKQYAALFGLENVELEFRENALI 356

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+A  A+   +     GAR L++++E VL D  +    ++    VVID
Sbjct: 357 AMAQKAMGRKT-----GARGLRSIVEEVLLDTMYDLPSVKNVSKVVID 399


>gi|29840676|ref|NP_829782.1| ATP-dependent protease ATP-binding subunit [Chlamydophila caviae
           GPIC]
 gi|33300937|sp|Q821L9|CLPX_CHLCV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29835026|gb|AAP05660.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           caviae GPIC]
          Length = 421

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R + L  +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYNVARAER 181



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG++ +            +Y 
Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQEDRDHLLTKVETEDLIAF 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E + L F +D++ A+
Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEENVKLIFEKDALYAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386


>gi|332283983|ref|YP_004415894.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
 gi|330427936|gb|AEC19270.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
          Length = 435

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI S LD Y+IGQ   KR +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPEEIKSFLDGYVIGQDTPKRTLAVAVYNHYKRIRYGEIKGDDVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+
Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLL 167



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
            I+++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 AIIYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQV 239

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313
           +T +ILFI  GAF     V R                              P DL+    
Sbjct: 240 DTTNILFIVGGAFDGLDKVIRDRTERSGIGFSASVRAKAERGVGELFAEVEPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L+ L +     ILT+  ++LI Q+++L + E + LD    ++ A+A 
Sbjct: 300 IPELVGRLPVLATLEELQEDTLVRILTEPRNSLIKQFQKLFEMEEVELDVRPGALTAIAQ 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L++++E+ L
Sbjct: 360 RAIKRRT-----GARGLRSIVEQAL 379


>gi|30022560|ref|NP_834191.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           14579]
 gi|206969732|ref|ZP_03230686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH1134]
 gi|218232453|ref|YP_002369279.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           B4264]
 gi|218899640|ref|YP_002448051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9842]
 gi|228903001|ref|ZP_04067141.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 4222]
 gi|228910307|ref|ZP_04074124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 200]
 gi|228923225|ref|ZP_04086515.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954755|ref|ZP_04116777.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228981163|ref|ZP_04141463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|229071981|ref|ZP_04205191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus F65185]
 gi|229081738|ref|ZP_04214231.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock4-2]
 gi|229129764|ref|ZP_04258731.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-Cer4]
 gi|229147042|ref|ZP_04275402.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST24]
 gi|229180748|ref|ZP_04308086.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 172560W]
 gi|229192684|ref|ZP_04319643.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 10876]
 gi|296504963|ref|YP_003666663.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis
           BMB171]
 gi|46576498|sp|Q817Q2|CLPX_BACCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706577|sp|B7IIY3|CLPX_BACC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706578|sp|B7HEA4|CLPX_BACC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29898118|gb|AAP11392.1| ATP-dependent clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 14579]
 gi|206735420|gb|EDZ52588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH1134]
 gi|218160410|gb|ACK60402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus B4264]
 gi|218542659|gb|ACK95053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9842]
 gi|228590774|gb|EEK48634.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 10876]
 gi|228602726|gb|EEK60209.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 172560W]
 gi|228636430|gb|EEK92900.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST24]
 gi|228653680|gb|EEL09551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-Cer4]
 gi|228701583|gb|EEL54076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock4-2]
 gi|228711140|gb|EEL63105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus F65185]
 gi|228778363|gb|EEM26630.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|228804953|gb|EEM51550.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836431|gb|EEM81782.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228849367|gb|EEM94204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 200]
 gi|228856677|gb|EEN01197.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 4222]
 gi|296326015|gb|ADH08943.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis
           BMB171]
 gi|326942251|gb|AEA18147.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 419

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409


>gi|297182366|gb|ADI18532.1| ATP-dependent protease clp, ATPase subunit [uncultured SAR406
           cluster bacterium HF4000_22B16]
          Length = 380

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IG ++ K++VA+A+ N ++R     D+ D  EL   NIL++GPTG GK
Sbjct: 32  PSEIKEYLDQYVIGHEETKKSVAVAVHNHYKRI-FYNDVDDGVELEKSNILMIGPTGTGK 90

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I++ LAR    PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 91  TLIAQTLARYLSVPFAIADATSLTEAGYVGEDVENILVRLLQVA 134



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 57/238 (23%)

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLV 279
           D  + L+ +  V   SI   E  GIV++DE DKI  +   + I   VS EGVQ+ +L ++
Sbjct: 122 DVENILVRLLQVANYSINSAEQ-GIVYIDEIDKIGRKSLSSSITRDVSGEGVQQAILKIL 180

Query: 280 EGS--SVSTKYG---------SINTDHILFIASGAFH----------------------- 305
           EG+  +V  K G          +NT +ILFI  G+F                        
Sbjct: 181 EGTIANVPPKGGRKHPEQSLIPVNTKNILFICGGSFESLEGIIARRVGKTEIGFGGSRKR 240

Query: 306 ----------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                     + +P DL+     PE+ GR PV   L SL+ S+   +L   +++L+ QY+
Sbjct: 241 QLAESQGILSLIKPQDLIEFGYIPELIGRLPVLTTLDSLSVSELYEVLISPKNSLVKQYQ 300

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           +L + EGI L+F+ED++ A+   A    +     GAR L++V+E+ + DI +   +++
Sbjct: 301 KLFRMEGIELEFSEDALKAVISKAYEHQA-----GARGLRSVLEKAMMDIMYHIPEME 353


>gi|311113764|ref|YP_003984986.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945258|gb|ADP41552.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 451

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 59/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG------- 289
            +GI+++DE DKI AR  G  + ++R    EGVQ+ LL ++EG+  +V  + G       
Sbjct: 199 QHGIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHPAHT 257

Query: 290 --SINTDHILFIASGAFH------VSR--------------------------PADL--- 312
              I T +ILFI +GAF       ++R                          P DL   
Sbjct: 258 NLEIETSNILFIVAGAFDGLEDRILARTDRTSIGFGAELTAAPDTDQTLSQIMPEDLTHY 317

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   LK L   +   ILT  ++ L+ QYK L   +G+ L F +D++ A+
Sbjct: 318 GIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFALDGVELIFEDDALHAV 377

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           A++A    +     GAR L+++ME +L+ I F   D Q+ T VVI  + VR
Sbjct: 378 AELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVVITEDTVR 423



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRD--ELMPK 54
           +PREI S L  Y+IGQ  AKR +A+A+ N ++R           + L A   +  +L   
Sbjct: 76  TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIHDLNNPVLHSRTLSATAGESVDLGKS 135

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L++ A
Sbjct: 136 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAA 191


>gi|330829917|ref|YP_004392869.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas
           veronii B565]
 gi|328805053|gb|AEB50252.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas
           veronii B565]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ+ AK+ +A+A+ N ++R +   +    EL   NILL+GPTG GK
Sbjct: 66  TPHQIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSGENSGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGAEVKSKDAKATLSETFAKVEPEDLIKY 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++S    IL + ++ L  QY  L   EG+ L+F +D+++A+
Sbjct: 299 GLIPEFIGRLPVVATLTELDESALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +    L+    VVID   ++
Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404


>gi|254994794|ref|ZP_05276984.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Mississippi]
          Length = 404

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           F+  P EI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPTG
Sbjct: 56  FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 57/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231

Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313
           NTD+ILFI  GAF                    +V + AD                  L+
Sbjct: 232 NTDNILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLVKFGLI 291

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     IL + +++L+ QY +L + + + L F   ++ A+A  
Sbjct: 292 PEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKK 351

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           AV  N+     GAR L  +ME +L D  F+    +   VV+DA  V
Sbjct: 352 AVARNT-----GARGL-PIMESLLLDFMFNPLGCEGGKVVVDAAMV 391


>gi|295838902|ref|ZP_06825835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
 gi|197695454|gb|EDY42387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
          Length = 428

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      P+   D  EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPSGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312
           +T ++LFI  GAF                                H+    P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLERIIEARAGAKGIGFGATIRSKREIESSDHLREVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + SL++     IL +    L+ QY+ L + +G+ L+F  ++++A+AD
Sbjct: 302 IPEFIGRLPVVTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     Q+   VVI A+ VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNV 408


>gi|138896218|ref|YP_001126671.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus
           thermodenitrificans NG80-2]
 gi|166214777|sp|A4IRH2|CLPX_GEOTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134267731|gb|ABO67926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           thermodenitrificans NG80-2]
          Length = 421

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQADVDEKNLLSKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ ++ QYK++++ +G+ L+F E ++  +A  
Sbjct: 296 PEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A+   +     GAR L++++E ++ D+ F   S  D+Q+  + +D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITVD 395


>gi|293115723|ref|ZP_05792771.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
 gi|292808606|gb|EFF67811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
          Length = 468

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 69/112 (61%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI ++LD Y++GQ+ AK+ +++A+ N ++R     D   E+   N+L++GPTG GKT
Sbjct: 116 APHEIKAKLDEYVVGQEHAKKVMSVAVYNHYKRVATSNDQSVEIQKSNMLMIGPTGSGKT 175

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LA++   P    + T  TE GY+G ++E ++  L+  A N V ++ R
Sbjct: 176 YLVQTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 227



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  +       VS E VQ+ LL ++EGS+V    G           +INT
Sbjct: 228 GIIFIDEIDKIAKKKETRSRDVSGESVQQGLLRILEGSNVDVPVGANSKNAMVPLTTINT 287

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 288 KNILFICGGAFPDLADIIKERLNKQAAIGFTADLRDKYDNDPDILDKVTMEDLRNFGMIP 347

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   LK L++     IL + ++ +I QY++L++ + + L F ++++ A+A  A
Sbjct: 348 EFLGRLPVVFALKELDEDMLVRILKEPKNAIIKQYEKLLELDEVKLMFNDEALRAIAAKA 407

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E  + DI +    D    +V I  EY+
Sbjct: 408 IEKKT-----GARALRSIIEEFMLDIMYEIPKDKNIGSVTITKEYI 448


>gi|149177956|ref|ZP_01856553.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148843149|gb|EDL57515.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 428

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 6/107 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +PREIV+ L+ Y+IGQ+ AK+ +A+A+ N ++R    ++  +D+  EL   NILL+GPTG
Sbjct: 75  TPREIVTHLNDYVIGQERAKKVMAVAVHNHYKRLMHSEEEGSDV--ELDKSNILLIGPTG 132

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 133 SGKTLLAKSLARYLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 60/240 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+F+DE DKI        I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 189 GILFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQL 248

Query: 292 NTDHILFIASGAF---------HVSRPA-------------------------------- 310
           +T +ILFI  G F          + R                                  
Sbjct: 249 DTSNILFICGGTFVGLEDIVGKRLGRKTIGFGQNNQQKKVQERSKNDLLAQASVDDVLEF 308

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE+ GR PV   L  L + D   +LT+ +++L+ Q+++  + E   L+FT+ ++  +
Sbjct: 309 GLIPELLGRLPVLSSLSQLGEGDLVRVLTEPKNSLVRQFQKFFEMEKAELEFTDGALHEI 368

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSE 429
           A +A   N+     GAR L++V+E+ + DI +   + +  K  V+  E ++     FPS+
Sbjct: 369 ARIAQKKNT-----GARGLRSVIEQAMFDIMYELPEQEAGKKYVVTPEIIQGTEQLFPSD 423


>gi|158321198|ref|YP_001513705.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus oremlandii
           OhILAs]
 gi|229889849|sp|A8MIS7|CLPX_ALKOO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158141397|gb|ABW19709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
           oremlandii OhILAs]
          Length = 426

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD+Y+IGQ+ AK+A+A+A+ N ++R  +  D++    EL   NIL++GPTG G
Sbjct: 63  PSEIKDILDQYVIGQEKAKKALAVAVYNHYKRINV-EDVKSGDVELQKSNILMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                     +P DLL    
Sbjct: 236 DTTNILFIVGGAFDGIDSIIQKRTSKKSMGFGAEIESKQVLDLGSLLKQIQPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L+ L++     ILT+ ++ L  QYK L + +G+ L+  E+++  +A 
Sbjct: 296 IPEFVGRLPVVVTLEQLDEEALIKILTEPKNALTKQYKRLFEIDGVHLEIEEEALRLIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A+   +     GAR L+ ++E ++ D  +   S  D+++  V+I AE +
Sbjct: 356 KAIERKT-----GARGLRGIVEGIMMDTMYEIPSRDDIEK--VIITAEAI 398


>gi|317139982|ref|XP_001817891.2| ATP-dependent Clp protease [Aspergillus oryzae RIB40]
          Length = 613

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 114/493 (23%), Positives = 188/493 (38%), Gaps = 124/493 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                         
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145

Query: 43  -----LPADLRDELMP----------------------KNILLVGPTGVGKTAISRRLAR 75
                 P   R    P                       NILL+GP+GVGKT +++ LA+
Sbjct: 146 PVEDEFPGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAK 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINA 130
           +   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+   
Sbjct: 206 VLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKV 265

Query: 131 E-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   E +  AL+ K     T +V  K+ ++   +    +     ++S + N   P 
Sbjct: 266 SHGKDVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPP 322

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G+    E+++      R   I       +  L +      + MD + R SI     
Sbjct: 323 SNGGGMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVMDRISRGSIG---- 367

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                   F + V   S +     R G         +P+V GS     Y      H+ F 
Sbjct: 368 --------FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEALY----KKHLPFF 412

Query: 300 ASG-------------AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
            S              A  +  P DL     +PE+ GR PV   L +L +     ILT+ 
Sbjct: 413 TSASPESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEP 472

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            ++L+ QY  L    GI L FT  ++  +A  A  + +     GAR L+T ME +L D  
Sbjct: 473 RNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAM 527

Query: 402 FSASDLQEKTVVI 414
           +       K V++
Sbjct: 528 YETPGSSVKFVLV 540


>gi|307129928|ref|YP_003881944.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
 gi|306527457|gb|ADM97387.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSNNSIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGLSQKATEGELLSQVEPGDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L +  +    L+    VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVID 399


>gi|72398636|gb|AAZ72731.1| ATP-dependent clp protease ATP-binding subunit [Bacillus
           thuringiensis serovar kurstaki]
          Length = 419

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L+      ILT  ++ L+ Q++EL++ + + L+F E ++  +A  
Sbjct: 296 PEFIGRLPVIANLEPLDGDALVDILTKPKNALVKQFQELLELDDVELEFEEGALIEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++    K  V D E  +L + D
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409


>gi|325570035|ref|ZP_08145960.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156863|gb|EGC69034.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 414

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+E+++ L+ Y+IGQ  AKR +A+A+ N ++R  +     D EL   NI L+GPTG GKT
Sbjct: 64  PQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 166



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 57/235 (24%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289
           +++M E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 169 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 227

Query: 290 ------SINTDHILFIASGAFHVSR--------------------------------PAD 311
                  I+T +ILFI  GAF                                    P D
Sbjct: 228 PHQEMIQIDTTNILFIVGGAFDGIETIVKNRLGEKTIGFGTNNKRLEEGESVMQQIIPED 287

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           LL     PE  GR PV   L+ L   D   ILT+ ++ L+ QY++LM  +   L+F  ++
Sbjct: 288 LLKFGLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTELEFEPEA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           + A+A  A+  N+     GAR L++++E ++ ++ F+  SD   + V I  E  +
Sbjct: 348 LRAIAAQAIERNT-----GARGLRSIIENIMMEVMFNVPSDESIQKVTITEEAAK 397


>gi|315645730|ref|ZP_07898854.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453]
 gi|315279208|gb|EFU42518.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453]
          Length = 421

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PR+I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NILL+GPTG GKT
Sbjct: 64  PRDIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313
           +T +ILFI  GAF     ++ R                             P DLL    
Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ + + L F   +++A+A 
Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPGALEAIAR 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+  N+     GAR L++++E ++ D+ +      + K  VI  + VR
Sbjct: 356 EAIKRNT-----GARGLRSIIEGIMLDVMYEVPSRDDIKDCVITEQVVR 399


>gi|251790647|ref|YP_003005368.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya zeae
           Ech1591]
 gi|247539268|gb|ACT07889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya zeae
           Ech1591]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +  +D  +  EL   NILL+GPTG G
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRT-SDGNNGVELGKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 125 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------VSR------------PADLL-- 313
           +T  ILFI  GAF                         VS+            P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGVSQKATEGELLSQVEPGDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L +  +    L+    VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVID 399


>gi|85713355|ref|ZP_01044369.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
 gi|85692822|gb|EAQ30806.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD Y+IGQ+ AK+ +++A+ N ++R +     +D  EL   NILL+GPTG GK
Sbjct: 67  PKEIRKHLDDYVIGQERAKKVLSVAVYNHYKRLRNAGKGKDDVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 TFLAETMARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILF+  GAF                      V  P                     
Sbjct: 240 DTSKILFVCGGAFAGLERVIEQRLATGTGIGFGAQVKSPNSAAQSEIISQVEPEDLVRYG 299

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  LN+     IL + ++ L  QY  L + E + L+F ED++ A+A
Sbjct: 300 LIPEFIGRLPVVATLDELNEDALVEILREPKNALTKQYSALFEMEDVELEFREDALRAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+N  +     GAR L++++E VL
Sbjct: 360 KKAMNRKT-----GARGLRSIVEGVL 380


>gi|271499598|ref|YP_003332623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech586]
 gi|270343153|gb|ACZ75918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech586]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNSDSNNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------VSR------------PADLL-- 313
           +T  ILFI  GAF                         VS+            P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGVSQKATEGELLGQVEPGDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLKELDEDALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L +  +    L+    VV+D
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVVD 399


>gi|220903966|ref|YP_002479278.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868265|gb|ACL48600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 430

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            SP+EI   LD+Y+IGQ +AK+ +++A+ N ++R      L D  EL   NILLVGP+G 
Sbjct: 63  LSPQEIKDRLDQYVIGQHEAKKILSVAVHNHYKRVFYADALGDDVELEKSNILLVGPSGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYVDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237

Query: 292 NTDHILFIASGAF---------HVS-------------------------RPADL----- 312
           +T +ILFI  GAF          +S                          P DL     
Sbjct: 238 DTRNILFIVGGAFVGLDKIVESRMSGGAMGFGAKVRSSKELPLGELLDRIHPQDLVKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+  H+  L+++D   ILT+ ++ L+ QY++L   E + L FT +++ ++A 
Sbjct: 298 IPEFVGRIPIITHVDELDEADLVRILTEPKNALVRQYQKLFGLENVTLRFTPNALKSIAS 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ VMER++ DI F
Sbjct: 358 KAIERKT-----GARGLRNVMERIMLDIMF 382


>gi|90417349|ref|ZP_01225274.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330791|gb|EAS46060.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 428

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI   LD Y+IGQ+ AKR +++A+ N ++R Q+          EL   NILL+GPTG 
Sbjct: 68  PAEIKGNLDAYVIGQERAKRILSVAVYNHYKRLQVSESDSSASEVELGKSNILLIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 GKTLLAETLARMLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 182



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313
           +T +ILF+  GAF                     V+               +P+DL+   
Sbjct: 243 DTSNILFVCGGAFAGLEKVIRDRSEKGGIGFSAEVTSKDSQKSIGETLLDVQPSDLIGYG 302

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ LD   D++DA+A
Sbjct: 303 LIPEFIGRLPVVATLQELDRDALVNILVEPKNALFKQYQSLFSMEGVELDLRRDALDAIA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           D A+   +     GAR L++++E VL D  +
Sbjct: 363 DKAIERKT-----GARGLRSILETVLLDTMY 388


>gi|33592843|ref|NP_880487.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis
           Tohama I]
 gi|46576479|sp|Q7VXI6|CLPX_BORPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33572491|emb|CAE42063.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           pertussis Tohama I]
 gi|332382256|gb|AEE67103.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella
           pertussis CS]
          Length = 434

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+T+      V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326
                                              + P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD   D++ A++  A+   +     GA
Sbjct: 314 DELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 368

Query: 387 RRLQTVMERVLEDISF 402
           R L++++E  L D  +
Sbjct: 369 RGLRSILEGALLDTMY 384


>gi|32490903|ref|NP_871157.1| ATP-dependent protease ATP-binding subunit ClpX [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|31340012|sp|Q8D347|CLPX_WIGBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25166109|dbj|BAC24300.1| clpX [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 415

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI + L+ Y+IGQ+ AK+ +++++ N +++ + L ++ + EL   N+LL+GPTG GKT
Sbjct: 68  PCEIFNYLNSYVIGQETAKKILSVSVYNHYKKLKNLKSNNKVELGKSNVLLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            ++  LAR    PFI  + T  TE GYVG +VE +I+ L++
Sbjct: 128 LLAETLARFLKVPFIISDATTLTEAGYVGEDVENVIQRLLN 168



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 61/233 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  S+V  K G          
Sbjct: 179 HGIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTISAVPKKGGRKHPQQEFFH 238

Query: 291 INTDHILFIASGAFH------------------------------------VSRPADLL- 313
           ++T +ILFI  GAF                                       +P DL+ 
Sbjct: 239 VDTTNILFICGGAFSGLNKIIEQRVLVKNSIGFNVDINNKLNINNKKNFLSQVQPEDLIK 298

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR P+   LK LN S+   IL   ++ L+ QYK L   EG+ L+F E+++ +
Sbjct: 299 FGLIPEFVGRLPIISVLKELNISELIEILIQPKNALVKQYKLLFNLEGVELEFNENALIS 358

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDAEYVR 420
           +A  +++  +     GAR L++++E +L D  +S    +  +K V+ D   +R
Sbjct: 359 IAKESLHKKT-----GARGLRSIIEHILLDTMYSLPSKKNVQKIVINDGVILR 406


>gi|322385235|ref|ZP_08058882.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270859|gb|EFX53772.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 409

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDSREEDDVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDEGASYMQAIVADDIQKFGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL++  + L+ QY+ L+  + + L+F E+++ A+A  A
Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILSEPRNALVKQYQTLLSYDDVELEFDEEALQAIARKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380


>gi|311107152|ref|YP_003980005.1| ATP-dependent Clp protease ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
 gi|310761841|gb|ADP17290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 103/390 (26%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+ +      V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQNSPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326
               V R                              P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD    ++ A+A  A+   +     GA
Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRPAALKAIARKALRRKT-----GA 368

Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           R L++++E+ L D  +   S    K VV+D
Sbjct: 369 RGLRSIIEQALLDTMYDLPSQGNVKRVVLD 398


>gi|227113466|ref|ZP_03827122.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    L+    VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVID 399


>gi|161609274|ref|NP_888798.2| ATP-dependent protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
 gi|161610395|ref|NP_884266.2| ATP-dependent protease ATP-binding subunit [Bordetella
           parapertussis 12822]
 gi|46576487|sp|Q7W8X1|CLPX_BORPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576495|sp|Q7WK82|CLPX_BORBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 434

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR 179



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+T+      V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326
                                              + P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD   D++ A++  A+   +     GA
Sbjct: 314 DELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 368

Query: 387 RRLQTVMERVLEDISF 402
           R L++++E  L D  +
Sbjct: 369 RGLRSILEGALLDTMY 384


>gi|307823842|ref|ZP_07654070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
 gi|307735136|gb|EFO05985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 64/233 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVS------TKYG--SIN 292
           +GIV+LDE DKI AR      G   VS EGVQ+ LL LVEGS V        K G  +++
Sbjct: 179 WGIVYLDEIDKI-ARSPEQQTGTRDVSGEGVQQALLRLVEGSHVKIPAKGRNKDGETTMD 237

Query: 293 TDHILFIASGAF-----HV--------------------------------SRPADL--- 312
           T +ILFIA G+F     HV                                ++P+DL   
Sbjct: 238 TRNILFIAGGSFPGLEKHVEKRLVPSNSAIGFHAEVNKTAEKPSLDDMLNATQPSDLRKF 297

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GRFPV   L++L+      +LT+ ++ L+ QY++L   EG+ L F +D++  +
Sbjct: 298 GLIPEFIGRFPVLAPLEALDVDALIRVLTEPKNALVRQYQQLFAYEGVELKFEQDALVEI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A  A+   +     GAR L+++ME++L    F   S+ D+++   ++DA+ V+
Sbjct: 358 AQKAIERET-----GARGLRSIMEQILRKTMFDIPSSDDVEQ--CIVDADVVK 403



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLVG 60
           P +I   LDRYIIGQ  AK  +A+A+ N ++R +  +        D   E+   NILL+G
Sbjct: 61  PAKIKEHLDRYIIGQHLAKEILAVAVYNHYKRLKHESGDAGLGEFDKDVEIGKSNILLIG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+G GKT ++  LA++ G PF+  + T  T+ GYVG +VE I+  L+DVA
Sbjct: 121 PSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVENILVRLLDVA 170


>gi|56416581|ref|YP_153655.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222474948|ref|YP_002563363.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma
           marginale str. Florida]
 gi|255002921|ref|ZP_05277885.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Puerto Rico]
 gi|255004049|ref|ZP_05278850.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Virginia]
 gi|269959004|ref|YP_003328793.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
 gi|81359219|sp|Q5PBC9|CLPX_ANAMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763829|sp|B9KHZ5|CLPX_ANAMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56387813|gb|AAV86400.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419084|gb|ACM49107.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma
           marginale str. Florida]
 gi|269848835|gb|ACZ49479.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
          Length = 405

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           F+  P EI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPTG
Sbjct: 56  FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 105/226 (46%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  SSV  + G          I
Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231

Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313
           NTD+ILFI  GAF                    +V + AD                  L+
Sbjct: 232 NTDNILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLVKFGLI 291

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     IL + +++L+ QY +L + + + L F   ++ A+A  
Sbjct: 292 PEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKK 351

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           AV  N+     GAR L+ +ME +L D  F+    +   VV+DA  V
Sbjct: 352 AVARNT-----GARGLRAIMESLLLDFMFNPLGCEGGKVVVDAAMV 392


>gi|212636026|ref|YP_002312551.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
 gi|226706596|sp|B8CRF6|CLPX_SHEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|212557510|gb|ACJ29964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 65  TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NASPKDGVELGKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 124 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 177



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILF+  GAF           HV                           P DL   
Sbjct: 238 DTSKILFVCGGAFAGLEKVIEQRSHVGTGIGFGAEVKGEADKATISDTLLQVEPEDLVKF 297

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+ +    IL++ ++ +  Q+  L + E + L+F ED++ A+
Sbjct: 298 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFEMEDVELEFREDALKAI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A     L +     GAR L++++E +L DI +
Sbjct: 358 A-----LKAQTRKTGARGLRSIVEGILLDIMY 384


>gi|50954516|ref|YP_061804.1| ATP-dependent protease ATP-binding subunit [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|61211467|sp|Q6AFZ6|CLPX_LEIXX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50950998|gb|AAT88699.1| ATP-dependent Clp protease ATP binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRD--ELMPKNILLVGP 61
           P+EI   L+ Y+IGQ+ AKR++A+A+ N ++R +       AD  D  E+   NILL+GP
Sbjct: 66  PKEIFGFLEEYVIGQEQAKRSLAVAVYNHYKRVRARQAITAADAIDDVEIAKSNILLIGP 125

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 TGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 174



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 184 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 243

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314
           +T ++LFI +GAF      +S                            P DL     +P
Sbjct: 244 DTTNVLFIVAGAFAGLEDIISNRAGKKGIGFGAPLHSKGDDINLFSEVLPEDLHKFGLIP 303

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT+ ++ L+ QY+ + + +G+ L+F   +++A+AD+A
Sbjct: 304 EFIGRLPVVTTVTQLDQDALMQILTEPKNALVRQYQRMFELDGVQLEFDHAALEAIADLA 363

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           V L  T    GAR L+ +ME VL  I F      E   VV+  E V
Sbjct: 364 V-LRKT----GARGLRAIMEEVLGPIMFEVPSSSEVARVVVTKEAV 404


>gi|238855232|ref|ZP_04645551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 269-3]
 gi|260664593|ref|ZP_05865445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932474|ref|ZP_06337899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|313471945|ref|ZP_07812437.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 1153]
 gi|238832124|gb|EEQ24442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 269-3]
 gi|239529127|gb|EEQ68128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 1153]
 gi|260561658|gb|EEX27630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303423|gb|EFA95600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI ++LD Y++GQ  AK+ +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 65  PVEIKNQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 YLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 58/218 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKI 236

Query: 292 NTDHILFIASGAFH-------------------------VSRPAD--------------- 311
           +T +ILFI  GAF                          V + AD               
Sbjct: 237 DTKNILFIVGGAFDGIESIVKSRLGKKTIGFGAESKFDDVDQDADSWNKYLTTGDLVKFG 296

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L K+D   ILT+ ++ L+ QY++L   + + L F++ +++A++
Sbjct: 297 LIPEFIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFSIDKVDLHFSDGALEAIS 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + A+  N     +GAR L+T++E  + D  ++    Q+
Sbjct: 357 EQALERN-----MGARGLRTIIENAMMDTMYTIPSEQD 389


>gi|170078143|ref|YP_001734781.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           PCC 7002]
 gi|238692806|sp|B1XN45|CLPX_SYNP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169885812|gb|ACA99525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7002]
          Length = 443

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVGP 61
           PREI   LD ++IGQ +AK+ +++A+ N ++R  L       P     EL   NILL+GP
Sbjct: 80  PREIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIGP 139

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 140 TGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQR 197



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 61/213 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 198 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 257

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFI  GAF                                     H+S P DL  
Sbjct: 258 DTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQRTAELLQHLS-PEDLVK 316

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L  L++     ILT  ++ L+ QYK+L+K + + L+F   +I A
Sbjct: 317 YGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRA 376

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 377 IAQEAYRRKT-----GARALRGIVEELMLDVMY 404


>gi|227328850|ref|ZP_03832874.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 424

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311
           +T  ILFI  GAF                      V   AD                   
Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    L     VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLDSVDKVVID 399


>gi|323498277|ref|ZP_08103279.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
 gi|323316705|gb|EGA69714.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  APREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    + +   VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSMNDVSKVVID 401


>gi|254507763|ref|ZP_05119894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
 gi|219549288|gb|EED26282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  APREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 95/226 (42%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    +     VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEAVLLETMYELPSMDNVSKVVID 401


>gi|225548962|ref|ZP_03769939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 94a]
 gi|225370565|gb|EEH00002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 94a]
          Length = 430

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF--------------HVSRPA-----------------------DLLP 314
           NT +ILFI  GAF               +   A                        L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|70699876|gb|AAZ06845.1| ClpX [Microbacterium arborescens]
          Length = 422

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60
           PREI S L+ Y++GQ  AKRA+++A+ N ++R +      PA+ R    E+   NILL+G
Sbjct: 66  PREIFSFLEEYVVGQDPAKRALSVAVYNHYKRVRAHSTLQPAEQRADDVEIAKSNILLLG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAA 175



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAFH------VSR--------------------------PADL-----LP 314
           +T ++LFI +GAF        SR                          P DL     +P
Sbjct: 245 DTTNVLFIVAGAFAGLEEIISSRVGKHGVGFGAPLQEKDKELDLFREVEPEDLHKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT  ++  + QY+ + + +G+ L+F +D++ A+AD+A
Sbjct: 305 EFIGRLPVVTSVSPLDQKALIEILTGPKNAFVKQYQRMFELDGVELEFEDDALRAIADLA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
           V   +     GAR L+ ++E VL  I F   SA D+ +K +V  A
Sbjct: 365 VARKT-----GARGLRAILEDVLGPIMFEIPSADDV-DKVIVTRA 403


>gi|317405212|gb|EFV85551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Achromobacter
           xylosoxidans C54]
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 166/390 (42%), Gaps = 103/390 (26%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+T+      V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326
               V R                              P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD    ++ A+A  A+   +     GA
Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRPAALKAIARKALKRKT-----GA 368

Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           R L++++E+ L D  +   S    K VV+D
Sbjct: 369 RGLRSIIEQALLDTMYDLPSQGNVKRVVLD 398


>gi|261749489|ref|YP_003257175.1| ATP-dependent Clp protease ATP-binding subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497582|gb|ACX84032.1| ATP-dependent protease Clp, ATPase subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 407

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  + +   I   VS EGVQ+ LL ++EGS ++            K  SI
Sbjct: 180 GIVFIDEIDKISRKKNNPSITRDVSGEGVQQALLKILEGSIINVPPQGGRKHPDQKMISI 239

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLLP 314
           NT++ILFIA G F                                     H  R   L+P
Sbjct: 240 NTENILFIAGGTFDGIENIISDRIHQFSIGFVNPNKKNKNEKNFLKNITAHDLRKFGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GRFP+  +L SL+K   + IL + ++ LI QYK+L   + I ++ T++ +D + D  
Sbjct: 300 ELIGRFPIITYLNSLDKIMLKKILIEPKNALIKQYKKLFDLDQISIEVTDEVLDIIIDKT 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYV 419
           + L      +GAR L++  E++  D  F+  ++ +  ++ ID E V
Sbjct: 360 LELG-----LGARGLRSFCEKIFVDYMFNIEEINKNQILNIDKEMV 400



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTGVGKTAIS 70
           LD+Y+IGQ +AK+ +++A+ N ++R     + ++     E+   NILL+G TG GKT ++
Sbjct: 71  LDKYVIGQNEAKKVISVAVYNHYKRVIHFLNNKEGNNDVEIEKSNILLIGNTGTGKTLLA 130

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + ++RL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 131 KSISRLLKIPFTIADATALTEAGYVGEDVESILTRLLQSA 170


>gi|238754236|ref|ZP_04615593.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
 gi|238707483|gb|EEP99843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTGTGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    L+    VV+D
Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVVD 399


>gi|222152935|ref|YP_002562112.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
 gi|254763867|sp|B9DU73|CLPX_STRU0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222113748|emb|CAR41754.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
          Length = 409

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R    ++ RDE    L   NIL++GPTG 
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALAVAVYNHYKRISF-SESRDEEEVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISDDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN  D   ILT  ++ L+ QY+ L+  +G+ L F +D+++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNIDDLIQILTVPKNALVKQYQALLSYDGVELSFDQDALEAIAAKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|218779309|ref|YP_002430627.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfatibacillum
           alkenivorans AK-01]
 gi|226706583|sp|B8FA63|CLPX_DESAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218760693|gb|ACL03159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfatibacillum alkenivorans AK-01]
          Length = 416

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI + LD Y+I Q  AK+ +++A+ N ++R     D +D ++   N+LL+GPTG GK
Sbjct: 64  SPKEIKAMLDEYVIEQDHAKKVLSVAVYNHYKRLDTAFDSKDVDIQKSNVLLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V  ++R
Sbjct: 124 TLLAQTLARFLDVPFTIADATALTEAGYVGEDVENIILSLLQNADYDVERAKR 176



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  SV  K G          +
Sbjct: 177 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIVEGTTASVPPKGGRKHPQQDFVKV 236

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  GAF+                                   +RP DLL    
Sbjct: 237 DTSNILFICGGAFNGLAELIQRRQGEKVMGFGAKVQTKTDMKIGDLLVQTRPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L +     ILT+ ++ L+ Q+++L + EG+ L FT+ ++ A+A 
Sbjct: 297 IPEFVGRLPVIATLGELGEESLVRILTEPKNALVKQFQKLFEMEGVKLRFTDSALSAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A++  S     GAR L+ ++E+ + DI +    ++     +  E V +H
Sbjct: 357 GALDRKS-----GARGLRAIVEKAMLDIQYEIPSMENVKECVIGEEVVMH 401


>gi|197284028|ref|YP_002149900.1| ATP-dependent protease ATP-binding subunit ClpX [Proteus mirabilis
           HI4320]
 gi|227358101|ref|ZP_03842443.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|238693153|sp|B4EU54|CLPX_PROMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194681515|emb|CAR40395.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227161836|gb|EEI46868.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   D  D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLR-NGDKADGVELGKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 125 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S            ++  +
Sbjct: 179 GIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-------------HVS-----------------------RPADLL-- 313
           +T  ILFI  GAF             H                          P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQNEKASEGELLAQVEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  LN+     IL + ++ L  QY+ L K EG+ L+F +D++ A+
Sbjct: 299 GLIPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L D  +     +  + VVID
Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLDTMYDLPSFENAEKVVID 399


>gi|33573324|emb|CAE37307.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           parapertussis]
 gi|33575673|emb|CAE32751.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
          Length = 453

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 85  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 143

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 144 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR 198



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    AE +  LD  ++G+T+      V     
Sbjct: 55  ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 114

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 115 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 157

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 158 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 212

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 213 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 272

Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326
                                              + P DL+     PE+ GR PV   L
Sbjct: 273 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 332

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ ++ L+ Q+++L   EG  LD   D++ A++  A+   +     GA
Sbjct: 333 DELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 387

Query: 387 RRLQTVMERVLEDISF 402
           R L++++E  L D  +
Sbjct: 388 RGLRSILEGALLDTMY 403


>gi|313906307|ref|ZP_07839650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
 gi|313468863|gb|EFR64222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 62/104 (59%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ+ AKR +A+A+ N ++R         EL   NIL++GPTG GK
Sbjct: 63  LKPVEIKKFLDEYVIGQEAAKRVLAVAVYNHYKRILSATSSDVELQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG  S+V  + G          
Sbjct: 175 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFIQ 234

Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312
           ++T +ILFI  GAF        SR                            P DL    
Sbjct: 235 VDTSNILFICGGAFEGLERIIESRKDTKSLGFEADLGIHKNTDIGEVLREVMPEDLVKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L  L++     IL + +++L+ QY++L + +G+ L F +D++ A+A
Sbjct: 295 LIPEFVGRVPVVVTLDGLDEDALVSILKEPKNSLVKQYQKLFEIDGVELKFEDDALRAMA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             AV   +     GAR L+ +ME  + D+ +
Sbjct: 355 AEAVRRKT-----GARGLRAIMESTMMDVMY 380


>gi|269795729|ref|YP_003315184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter
           keddieii DSM 10542]
 gi|269097914|gb|ACZ22350.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter
           keddieii DSM 10542]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PR I   L++YIIGQ+ AKR++A+A+ N ++R Q     R         ++   NILL+G
Sbjct: 64  PRAIFDFLEQYIIGQEGAKRSLAVAVYNHYKRIQAGEGARSVGEDASQVDIAKSNILLIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 PTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242

Query: 292 NTDHILFIASGAF----------------------HVSRPAD--------------LLPE 315
           +T ++LFI +GAF                      H +  AD              L+PE
Sbjct: 243 DTTNVLFIVAGAFAGLDEIISSRAGKHGIGFGAPLHTADAADAFGDVMPEDLLKFGLIPE 302

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   +  L+++    ILT+  + L+ QY+ + + +G+ L+FT+D++ A+AD A+
Sbjct: 303 FIGRVPVITTVTPLDQTSLVRILTEPRNALVKQYQRMFEIDGVELEFTDDAVAAIADQAL 362

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
            L  T    GAR L+ +ME VL+ + F
Sbjct: 363 -LRGT----GARGLRAIMEEVLQQVMF 384


>gi|186681336|ref|YP_001864532.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc punctiforme
           PCC 73102]
 gi|238691194|sp|B2IT91|CLPX_NOSP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|186463788|gb|ACC79589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nostoc
           punctiforme PCC 73102]
          Length = 446

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 11/128 (8%)

Query: 3   LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDEL 51
           ++FN    PREI   LD ++IGQ +AK+ +++A+ N ++R          +  AD   EL
Sbjct: 74  ISFNQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKATGKAAADDAVEL 133

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 134 QKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193

Query: 112 NIVRESRR 119
             + E++R
Sbjct: 194 LDIEEAQR 201



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 60/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T +ILF+  GAF                                    H++ P DL   
Sbjct: 262 DTSNILFVCGGAFVGLEKVVDQRVGKKAIGFVQPGEGQTKEKRAADTLRHLA-PDDLVKF 320

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR P+   +  L++     ILT   S L+ QY++L+K + + LDF  D++ A+
Sbjct: 321 GMIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALRAI 380

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 AQEAYRRKT-----GARALRGIVEELMLDVMY 407


>gi|146281742|ref|YP_001171895.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|145569947|gb|ABP79053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|327479989|gb|AEA83299.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri DSM 4166]
          Length = 438

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 60/227 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVSTKYGS--------- 290
            +GIV++DE DK+ AR  G G  V   S EGVQ+ LL LVEGS V    G          
Sbjct: 177 QWGIVYIDEVDKL-ARRGGGGTAVRDISGEGVQQALLKLVEGSEVRIGKGGRRGEHGEEQ 235

Query: 291 -INTDHILFIASGAF-----------HV--------SRPAD------------------- 311
            ++T +ILFIA GAF           H         +RP                     
Sbjct: 236 VVDTRNILFIAGGAFPGLETLVGSRVHPRGSAIGFHARPQQQAPSINELLAALLPDDLHE 295

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GRFP+   L+ L+ +    IL++  + L+ QY++L   +G+ L+F+E ++  
Sbjct: 296 FGLIPEFIGRFPIITFLRELDHATLLRILSEPRNALVKQYQQLFAYQGVKLEFSEAALGH 355

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           +AD A+ L  T    GAR L+ VME  L+   F   +  Q ++ ++D
Sbjct: 356 IADQAL-LRRT----GARGLRAVMESALQRTMFEMPAQPQLRSCLLD 397



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNIL 57
            +P   +  LD  +IGQ +AK  +A+A+ N + R          QL   +  EL   NIL
Sbjct: 59  LTPAAYMQHLDESVIGQDEAKETLAVAVYNHYLRLLNCTREPVCQLGGTV--ELEKSNIL 116

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           + GP+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L++ A   V+++
Sbjct: 117 MAGPSGTGKTLLVRTLARILGVPFASADATTLTQAGYVGDDVDSIIARLLEAAGGDVQKA 176

Query: 118 R 118
           +
Sbjct: 177 Q 177


>gi|160898087|ref|YP_001563669.1| ATP-dependent protease ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
 gi|238687212|sp|A9C1U9|CLPX_DELAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160363671|gb|ABX35284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
          Length = 420

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ   KR +A+A+ N ++R   +        EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQDLPKRTLAVAVYNHYKRLRHKDKAGKDEIELAKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+
Sbjct: 126 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 240

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI  GAF                             +S       P DL+    
Sbjct: 241 DTTNILFICGGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEVFQEIEPEDLIKFGI 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG+ L+    ++ A+A 
Sbjct: 301 IPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L++++E+ L
Sbjct: 361 KALARKT-----GARGLRSILEQSL 380


>gi|320540338|ref|ZP_08039990.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
 gi|320029658|gb|EFW11685.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKRLRNSDASNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLINF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++++A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGAELEFRDEALNAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +   + VVID
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVID 399


>gi|297160514|gb|ADI10226.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           bingchenggensis BCW-1]
          Length = 428

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD---ELMPKNILLVGPT 62
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q     A  RD   EL   NILL+GPT
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENSAHNRDDGIELAKSNILLLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAS 171



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ L F   +++A+AD
Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELHFDRPALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+ L  T    GAR L+ ++E VL
Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380


>gi|238764859|ref|ZP_04625800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
 gi|238696966|gb|EEP89742.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+     V   GAR L++++E  L D  +   + D  EK VV
Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398


>gi|317486005|ref|ZP_07944860.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6]
 gi|316922778|gb|EFV44009.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6]
          Length = 418

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62
            +P+EI + LD Y+IGQ +AK+ +A+A+ N ++R      L  D   EL   NILLVGP+
Sbjct: 61  LTPQEIKARLDEYVIGQDEAKKILAVAVHNHYKRVFYADALKGDDGVELEKSNILLVGPS 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 GSGKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 59/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKISRKADGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                      PADL     
Sbjct: 238 DTSNILFIVGGAFIGLDKIVEQRMRGGSMGFGAKVETKKERTLGELLEQVHPADLVQFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV  H+  L + D   ILT+ ++ L  QY++L + + + L FT D++ A+A 
Sbjct: 298 IPEFVGRIPVLTHVDDLGEDDLVRILTEPKNALTRQYQKLFELDNVTLRFTSDALRAIAH 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
            A+   +     GAR L+ VME V+ DI +    +   ++ V+ DA
Sbjct: 358 RAIERKT-----GARGLRNVMESVMLDIMYQLPSMPGVKECVINDA 398


>gi|313836729|gb|EFS74443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA2]
 gi|314929865|gb|EFS93696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL044PA1]
 gi|314972292|gb|EFT16389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA3]
 gi|328907722|gb|EGG27486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium sp. P08]
          Length = 430

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q   D+           EL   NILL+
Sbjct: 65  PRELCDFLDAWVIGQEEAKRTLSVAVYNHYKRIQSAVDVPHARRAEDDGVELGKSNILLL 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASG----------------------------------AFHVSRPADL----- 312
           +T +ILFI  G                                  AF +  P DL     
Sbjct: 245 DTTNILFIVGGSFAGLEDIITKRIGTRPLGFNNDPGMRKVVEGPEAFSLVCPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L F++ ++ A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFSDGALSAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVAQGT-----GARGLRAIIEETLMDVMF 389


>gi|153005127|ref|YP_001379452.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028700|gb|ABS26468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R         Q P   R      EL   
Sbjct: 62  TPAEIKSFLDDYVVGQDKAKKVLSVAVYNHYKRVYSKKPARPQRPGQTRTGSDDVELQKS 121

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A
Sbjct: 122 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHAA 177



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVAR-DSGNGI-GVSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  + DS +    V  EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 187 GIVYVDEIDKIARKGDSPSPTRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYIQV 246

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312
           +T +ILFI  GAF     V R                              P+DL     
Sbjct: 247 DTSNILFIVGGAFCGLEQVIRRRAGVKALGFGAKIERKEEASLGELLARVEPSDLVKFGM 306

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L++ D   ILT  ++ L  QY +L + E + L FT++S+ A A 
Sbjct: 307 IPEFVGRLPIIATLADLSEEDLVTILTQPKNALTKQYVKLFELEKVKLSFTKESLRATAR 366

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   S     GAR L+ ++E+ + DI +
Sbjct: 367 EAMRRKS-----GARGLRAILEQAMLDIMY 391


>gi|238751007|ref|ZP_04612503.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238783608|ref|ZP_04627629.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238795541|ref|ZP_04639056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
 gi|238710697|gb|EEQ02919.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238715486|gb|EEQ07477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238720660|gb|EEQ12461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
          Length = 423

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           A  A+   +     GAR L++++E  L D  +   + D  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398


>gi|332160750|ref|YP_004297327.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604629|emb|CBY26127.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664980|gb|ADZ41624.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859949|emb|CBX70278.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           enterocolitica W22703]
          Length = 423

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L D  +    ++  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVV 398


>gi|311031427|ref|ZP_07709517.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus sp.
           m3-13]
          Length = 422

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PKEIRDILDEYVIGQESAKKSLSVAVYNHYKRINSNSKIDDVELAKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      + R                             P DLL    
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGKKVIGFGTAETKADDLEQKELLGKVLPEDLLRFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT  ++ L+ QY++++  + + L+F E ++  +A 
Sbjct: 296 IPEFIGRLPVTASLMPLDEDALIEILTKPKNALVKQYQKMLDLDNVELEFEEGALTEIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E ++ D+ +     ++ K  VI AE V
Sbjct: 356 KAIERKT-----GARGLRSIIEGIMLDVMYELPSREDIKKCVITAETV 398


>gi|150020521|ref|YP_001305875.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho
           melanesiensis BI429]
 gi|149793042|gb|ABR30490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho
           melanesiensis BI429]
          Length = 408

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I +ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   N++L+GPTG GKT
Sbjct: 60  PSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSNVDFDDVEIEKSNVILIGPTGSGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            I+R LA++   PF   + T  TE GYVG +VE +I  L++V
Sbjct: 120 LIARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEV 161



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 61/228 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++ 
Sbjct: 170 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFL 229

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFI  GAF                                   H++ P DL  
Sbjct: 230 KVDTSNILFIVGGAFDGIEEIIKRRIQSSAMGFNAPIKSKKEMKLGEILSHIT-PEDLVQ 288

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L+ L + D   ILT+ ++ ++ QYK+L   + I L+ T+D++ A
Sbjct: 289 YGLIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLIDNIELEVTKDALYA 348

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVID 415
           +A  A    +     GAR L++V E V+ D+ F   DL   EK +V +
Sbjct: 349 IARKAAKRGT-----GARALKSVFEEVMIDVMFEIPDLDNVEKVIVTE 391


>gi|83644979|ref|YP_433414.1| ATP-dependent protease ATP-binding subunit ClpX [Hahella chejuensis
           KCTC 2396]
 gi|123533762|sp|Q2SK35|CLPX_HAHCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83633022|gb|ABC28989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hahella
           chejuensis KCTC 2396]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AK A+A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 69  TPHEIKETLDDYVIGQTRAKLALAVAVYNHYKRLRYEDKKGEVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAF------------------------HVSRPA----------------D 311
           +T +ILFI  GAF                         +S  +                 
Sbjct: 242 DTSNILFICGGAFAGLEKIIRDRAEKGSIGFSAVVKSQLSSKSVGETLKDVETEDLIKFG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L+++    ILT   + L  QY +L + E + +DF ED++ ++A
Sbjct: 302 LIPEFVGRLPVIATLDELDEAALIQILTQPRNALTKQYSKLFEMESVEVDFREDALRSIA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+   +     GAR L++++E+VL
Sbjct: 362 KKAMERKT-----GARGLRSILEQVL 382


>gi|269120919|ref|YP_003309096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
 gi|268614797|gb|ACZ09165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
          Length = 408

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 6/108 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62
           + P EI  +LD YIIGQ +AK+ +A+++ N ++R  +   L++    EL   N+LL+GPT
Sbjct: 63  YKPSEIKKKLDDYIIGQDEAKKVLAVSVYNHYKR--ITHKLQNVDDIELQKSNVLLMGPT 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 121 GSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLLKLIKAA 168



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 57/229 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG  SSV  + G          
Sbjct: 177 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIVEGTVSSVPPQGGRKHPNQEMIE 236

Query: 291 INTDHILFIASGAF-----------HVSR----------------------PADLL---- 313
           I+T  ILFI  GAF           ++ R                      P DL+    
Sbjct: 237 IDTKDILFIVGGAFEGLEEKIENRLNIKRVGFGVDHTREKLDSLTIFKNVLPEDLIKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR P+   L  L++     ILT+ +++L+ QYK+ ++ E + L+F +D+I+ +A 
Sbjct: 297 IPELVGRVPIITALSGLDEEALVKILTEPKNSLVKQYKKYLELENVSLEFKKDAIEEIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +A         IGAR L+++ME ++ D+ +   S    K V+I  E V+
Sbjct: 357 MAFERK-----IGARGLRSIMEGIMIDVMYDIPSKKNIKKVIITKEAVK 400


>gi|315634781|ref|ZP_07890063.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476333|gb|EFU67083.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 66  TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 126 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 166



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          I
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRI 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT+D++ A+
Sbjct: 299 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVELEFTKDALIAM 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E VL D  +    L+  EK VV
Sbjct: 359 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVV 398


>gi|269469209|gb|EEZ80743.1| ATP-dependent protease Clp, ATPase subunit [uncultured SUP05
           cluster bacterium]
          Length = 418

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           ++++P+E+   L+ Y+IGQ  AK+ +++A+ N ++R Q      D EL   NIL++GPTG
Sbjct: 58  WDYTPKELRDFLNEYVIGQDHAKKVLSVAVYNHYKRLQSGYISNDVELDKSNILMIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT +++ LAR+   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 118 SGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKSLL 161



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  R     I   VS EGVQ+ +L L+EG+  SV  + G          +
Sbjct: 174 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTVASVPPQGGRKHPNQETIDV 233

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                     +  P DL+  
Sbjct: 234 DTSKILFICGGAFDGLDKIIGKRVEKSTGIGFSAAVKDQSKEKTLSDLFDLIEPEDLIKY 293

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV+  L  L++     ILT  ++++I Q+KE+   EG+ L F + ++ A+
Sbjct: 294 GLIPELVGRLPVQTSLGELDEDALIQILTKPKNSVIKQFKEVFLMEGVKLTFKKPALSAI 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A +A+   +     GAR L++++E +L D  F    ++    VVID E V
Sbjct: 354 AKLAIKRKT-----GARGLRSIIEDLLLDTMFDLPSMESVMEVVIDKEVV 398


>gi|210634105|ref|ZP_03297993.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279]
 gi|210158956|gb|EEA89927.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279]
          Length = 471

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 15/117 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P EI   L  Y++GQ+DAKRA+++A+ N +RR  L  D  D              EL  
Sbjct: 106 TPHEIYDALSLYVMGQEDAKRAMSVAVYNHYRRV-LEGDDADKAHGAHAASFEEDVELAK 164

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L++ A
Sbjct: 165 SNILLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLINAA 221



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV    G          I
Sbjct: 231 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 290

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     ++ P                     +
Sbjct: 291 DTTNILFICGGAFVGLDKIISDRVGNQGVGFNSEIAGPTSKDENILLKQVLPEDLNNFGM 350

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV    ++L + D  +ILT+  + ++ QY+ +   E + L F ++++  +A 
Sbjct: 351 IPEFIGRTPVITQTQALTEDDLVMILTEPRNAVVKQYRRMFAMENVELVFEDEALHEIAK 410

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+++ E VL+   F
Sbjct: 411 KALARKT-----GARGLRSICEEVLQQTMF 435


>gi|306820815|ref|ZP_07454439.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551133|gb|EFM39100.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVGK 66
           P+EI S LD YIIGQ+ AK+ ++++L N ++R     + +D++     NILL+GPTG GK
Sbjct: 64  PKEIKSFLDEYIIGQESAKKVLSVSLYNHYKRVYNLENKKDDIDIQKSNILLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 124 TLLAQTLAKIMNVPFAIADATTLTEAGYVGEDVENILLKLIQAS 167



 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKITRKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPSQELIQI 236

Query: 292 NTDHILFIASGAFH---------------------VSR------------------PADL 312
           +T +I+FI  GAF                      VS+                     L
Sbjct: 237 DTTNIMFIVGGAFEGIDEIIKKRMGKNSIGFGTEIVSKEDVNKEKIYKKVQTEDLLKYGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L++S    IL + +++L+ Q+K+L + + + L+  ++++  +A 
Sbjct: 297 IPEFVGRLPIVASLDPLDESALVKILKEPKNSLVKQFKKLFELDNVELEIDDEALIEVAR 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E  + DI +
Sbjct: 357 KAIERKT-----GARGLRSILEETMMDIMY 381


>gi|307747216|gb|ADN90486.1| ATP-dependent Clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315927197|gb|EFV06547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315929560|gb|EFV08749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315932559|gb|EFV11491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + ++  +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394


>gi|300859019|ref|YP_003784002.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686473|gb|ADK29395.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331272|gb|ADL21466.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis 1002]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R           +   D   EL   NIL+
Sbjct: 67  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186

Query: 119 R 119
           R
Sbjct: 187 R 187



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312
           +T +ILFI +GAF                       S+             P DL     
Sbjct: 248 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 307

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD
Sbjct: 308 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
           +A+   +     GAR L+ +ME +L  + +   D ++  VV + A  VR
Sbjct: 368 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAASVR 411


>gi|160933530|ref|ZP_02080918.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753]
 gi|156867407|gb|EDO60779.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753]
          Length = 439

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T    P EI ++LD Y+IGQ+ AK A+++A+ N ++R    +D   E+   N+LL+GPTG
Sbjct: 66  TVLLKPEEIKAKLDEYVIGQEKAKIALSVAVYNHYKRIYFGSD-DVEINKSNVLLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 VGKTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 171



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 181 GIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 240

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADL----- 312
           +T +ILFI  GAF      V +                             P DL     
Sbjct: 241 DTSNILFICGGAFDGLEKVVEKRTGSSSLGFGAQVRSKKELDTTKWMGEVVPHDLVKYGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  L++     ILT+ +++++ QYK+L   + + LDF + +++A+A 
Sbjct: 301 IPELVGRLPVITALDGLDQEALVRILTEPKNSILKQYKKLFALDKVELDFEKSALEAVAQ 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A++  +     GAR L+++ME  L D+ +   SD   + V++D E V+
Sbjct: 361 KAIDRRT-----GARGLRSIMEETLTDLMYKVPSDYSVEKVIVDGETVK 404


>gi|332970862|gb|EGK09840.1| ATP-dependent Clp protease ATP-binding subunit [Kingella kingae
           ATCC 23330]
          Length = 422

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P ++V++L+ ++IGQ+ AK+++A+A+ N ++R + P D  D  EL   N+L++GPTG G
Sbjct: 66  TPAQLVAQLNEHVIGQEQAKKSLAVAVYNHYKRLRQP-DTADKVELSKSNVLMIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT + + LAR    PF   + T  TE GYVG +VE I+  L+
Sbjct: 125 KTYMVQSLARHLNVPFAMADATTLTEAGYVGEDVESIVTKLL 166



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+           + + ++ ++
Sbjct: 179 GIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRRNPNQQFIAV 238

Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADLL--- 313
           +T +ILFI  GAF                      H                P DL+   
Sbjct: 239 DTSNILFICGGAFAGLDKVIRQRTEKGGIGFGANVHSKDEDSRISELFEQVEPEDLIRFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E   L   +D++  +A
Sbjct: 299 LIPELIGRLPVLTSLAELDEVALVRILTEPKNALVKQYQALFAMENKALQIDDDALRVVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            +A+   +     GAR L+++MER L +  +    L +  TVV++
Sbjct: 359 QLAMKRKT-----GARGLRSIMERALLETMYLLPTLDDVATVVVN 398


>gi|320094138|ref|ZP_08025951.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978940|gb|EFW10470.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 419

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGVG 65
           PREI   L+ ++IGQ  AKRA+++A+ N ++R +      +E M     NILL+GPTG G
Sbjct: 65  PREINEFLNSWVIGQTRAKRALSVAVYNHYKRVRSREAGHEEDMLGTKSNILLLGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ R
Sbjct: 125 KTHLARSLARLLEVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAER 178



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPSGGRKHPHQQFLEI 238

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                         S   DL              +P
Sbjct: 239 DTSGILFIAAGAFAGIEEIVKARLGQRSTGFGSELKSASEMGDLYEAVNAEDLHKFGMIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+    K L K D   +LT+  ++L+ QY+ L + +GI LDFT  ++ A+A  A
Sbjct: 299 EFIGRLPILTSTKELTKEDLVRVLTEPNNSLVRQYQHLFELDGIELDFTRGALLAIAAQA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
            N   T    GAR L ++MER L D+ F
Sbjct: 359 -NERKT----GARGLSSIMERTLSDLMF 381


>gi|317133440|ref|YP_004092754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
 gi|315471419|gb|ADU28023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI   LD+Y++GQ+DAK A+++A+ N ++R         +L   NILL+GPTGVGKT 
Sbjct: 68  PKEINEILDQYVVGQEDAKVALSVAVYNHYKRIYYGETSDVDLQKSNILLLGPTGVGKTM 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA +   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 LAQTLAHILKVPFAIADATTLTEAGYVGEDVENILLRLIQAA 169



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V    G          
Sbjct: 178 HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVSNVPPMGGRKYPHQEFIQ 237

Query: 291 INTDHILFIASGAFH----------VSR------------------------PADL---- 312
           INT  ILFI  GAF           VS+                        P DL    
Sbjct: 238 INTKDILFICGGAFDGLDKIIEKRTVSKALGFGADVRGKKEKAGINIFKNAIPQDLVHFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L +L++     ILT+ ++ ++ QY +L + +G+ L F E +++A+A
Sbjct: 298 LIPELVGRIPVITTLNALDRKALIRILTEPKNAIVKQYIKLFEMDGVQLVFDESALNAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           D A+   +     GAR L+ +ME +L  + F
Sbjct: 358 DKAIARET-----GARGLRAIMEDLLTAVMF 383


>gi|307328454|ref|ZP_07607629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           violaceusniger Tu 4113]
 gi|306885866|gb|EFN16877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           violaceusniger Tu 4113]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD---ELMPKNILLVGPT 62
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q   +    RD   EL   NILL+GPT
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGHSRDDGIELAKSNILLLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY  L + +G+ LDF   +++A+AD
Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYMRLFELDGVELDFDHPALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+ L  T    GAR L+ ++E VL
Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380


>gi|306823252|ref|ZP_07456628.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801887|ref|ZP_07696002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553884|gb|EFM41795.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221443|gb|EFO77740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium dentium JCVIHMP022]
          Length = 440

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 140/325 (43%), Gaps = 91/325 (28%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           SD   D++VA      SN  + G   VG   L++  +KVM                P ++
Sbjct: 119 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 159

Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268
            D +          D++TV +  IQ  +        GIV++DE DKI AR SG    ++R
Sbjct: 160 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 218

Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304
               EGVQ+ LL ++EG+  S                I+T  ILFI  GAF         
Sbjct: 219 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 278

Query: 305 ---------------H--------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFR 335
                          H            AD      LLPE  GR PV   L+ L + D  
Sbjct: 279 RLGARESGFGAAWHDHEVPKRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 338

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT  E+ L+ QY++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+
Sbjct: 339 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 393

Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419
            LED  F    L + + V++DA  V
Sbjct: 394 TLEDTMFQLPSLDDVSEVIVDAASV 418



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50
           P +I + LD Y++GQ+ AKR +++A+ N ++R  +     A+L D              +
Sbjct: 67  PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 126

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 127 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 186


>gi|88860445|ref|ZP_01135083.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           tunicata D2]
 gi|88817643|gb|EAR27460.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           tunicata D2]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 5/114 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R   Q   +++  EL   NILL+GPTG G
Sbjct: 70  PKEIRAHLDDYVIGQDHAKKVLSVAVYNHYKRLKNQDKSSNI--ELGKSNILLIGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  +A+L   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 KTLLAETMAKLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312
           +T  ILFI  GAF                               +S       P DL   
Sbjct: 242 DTSKILFICGGAFAGLDKVIEQRSTKNTGIGFGVDVKSSAAGRSISESFKDVEPEDLVKY 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY  L K E + L+F +D++ A+
Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILNEPKNALTKQYGALFKMENVELEFRDDALLAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 362 AKKAMDRKT-----GARGLRSIVEGVLLETMYELPSMEDVSKVVIDETVIK 407


>gi|327398619|ref|YP_004339488.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
           maritima DSM 10411]
 gi|327181248|gb|AEA33429.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
           maritima DSM 10411]
          Length = 418

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILL 58
           KLT + +P EI   LD YI+ Q DAK+ +A+A  N ++R   Q L      EL   NILL
Sbjct: 62  KLT-SLTPEEIKKRLDEYIVSQDDAKKVLAVAAYNHYKRINSQTLKRKDDVELEKSNILL 120

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           +GPTG GKT I++ LA++   PF   + T  TE GYVG +VE I+
Sbjct: 121 IGPTGTGKTLIAKTLAKILNVPFAIADATSLTEAGYVGEDVENIL 165



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YG----------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V+   YG           I
Sbjct: 182 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGSIVNVPPYGGRKHPQQEFIQI 241

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      ++R                            P DL+     
Sbjct: 242 DTTNILFICGGAFEGLENIIARRINKKAIGFTNPVNIDKKEKYNLLKQATPEDLMRYGLI 301

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR  V   L  LN+ +   ILT+ ++ L+ QY ++   + + L  T+D++ A+A  
Sbjct: 302 PELIGRLHVVATLNELNEEELVRILTEPKNALVKQYSKMFSMDNVKLTITDDALRAIARK 361

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+        +GAR L+++ME ++ D+ F    +++ K  +ID   V
Sbjct: 362 AIERK-----VGARGLRSIMEEIMVDLMFKIPSMKDVKECIIDENVV 403


>gi|310778379|ref|YP_003966712.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
 gi|309747702|gb|ADO82364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 5/108 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
             P+EI + LD Y+IGQ+ AK+ +A+++ N ++R  L  D R+E    L   N+LL+GPT
Sbjct: 65  LKPKEIKTSLDEYVIGQEHAKKVLAVSVYNHYKRI-LHKDKREESDVELQKSNVLLIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 124 GSGKTLLAQTLARTLHVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 171



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+   V  + G          I
Sbjct: 181 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTKAQVPPQGGRKHPHQELIEI 240

Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADL----- 312
           +T +ILF+  GAF                                 +S+  P DL     
Sbjct: 241 DTSNILFVVGGAFEGLDKVIKSRTKKKVIGFGADMKYDSKESEDETLSKVLPEDLVKHGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L++     IL + ++ +I QYK+  + E + L+F ED++  +A 
Sbjct: 301 IPELIGRLPVLTTLEHLDEDALISILVEPKNAIIKQYKKFFEFEEVKLEFEEDALKRIAH 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
           +A++       IGAR L++++E  +
Sbjct: 361 MAIDRK-----IGARGLRSILESTM 380


>gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2866]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397


>gi|260913094|ref|ZP_05919576.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
 gi|260632681|gb|EEX50850.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
          Length = 412

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKKIIDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ LV
Sbjct: 123 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLV 163



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 59/217 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 176 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 235

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313
           +T  ILFI  GAF           HV                           P DL+  
Sbjct: 236 DTSKILFICGGAFAGLDKVIEKRVHVGSGIGFSAEVKGKQDKATLSQLFEQVEPDDLMKF 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ LI QY+ L   E + L+FT++++ A+
Sbjct: 296 GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFGLEDVALEFTQEALIAM 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           A  A+   +     GAR L++++E VL D  +    L
Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSL 387


>gi|302519064|ref|ZP_07271406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|318060126|ref|ZP_07978849.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actG]
 gi|318076384|ref|ZP_07983716.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actF]
 gi|333027109|ref|ZP_08455173.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
 gi|302427959|gb|EFK99774.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|332746961|gb|EGJ77402.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      P    D  EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPTGRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312
           +T ++LFI  GAF                                H+    P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLERIIEARAGAKGIGFGATIRSKREIESSDHLREVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + SL++     IL +    L+ QY+ L + +G+ L+F  ++++A+AD
Sbjct: 302 IPEFIGRLPVVTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     Q+   VVI A+ VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNV 408


>gi|86149706|ref|ZP_01067936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597315|ref|ZP_01100550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|85839974|gb|EAQ57233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190376|gb|EAQ94350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|284925551|gb|ADC27903.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + ++  +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394


>gi|150016210|ref|YP_001308464.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082489|sp|A6LT28|CLPX_CLOB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|149902675|gb|ABR33508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+++A+A+ N ++R      D+  EL   NILL+GPTG GKT
Sbjct: 63  PNEIKEYLDSYVIGQERAKKSLAVAVYNHYKRINTNKEDIDVELSKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 LLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313
           NT +ILFI  GAF        + +R                          PADLL    
Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAQIQAKHEKDVGSLLKEIMPADLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+K     ILT  ++ L+ QYK+L + + + L+F E S+ A+A+
Sbjct: 295 IPEFVGRLPILVTLESLDKEALIQILTKPKNALVKQYKKLFELDDVKLEFDEKSLIAIAE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A++  +     GAR L+ ++E ++ +I +   SD +   V+I  E ++
Sbjct: 355 EAISRQT-----GARGLRAIIEDIMNEIMYEIPSDNRITNVIITEEAIK 398


>gi|320450476|ref|YP_004202572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           scotoductus SA-01]
 gi|320150645|gb|ADW22023.1| ATP-dependent Clp protease, ATP-binding, subunit ClpX [Thermus
           scotoductus SA-01]
          Length = 400

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 55/224 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 167 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIP 225

Query: 291 INTDHILFIASGAFH----------------VSR--------------PADL-----LPE 315
           +NT +ILFI  GAF                  +R              P DL     +PE
Sbjct: 226 VNTKNILFILGGAFEGLENIVKARTERTTIGFTRGKAKEAHEEPLEVIPEDLVKFGMIPE 285

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR P+ V L  L + D   ILT+ ++ L+ QY+ELM+ EGI L FT+ ++  +A  A+
Sbjct: 286 FVGRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELMRLEGIELRFTQAALKEIARRAL 345

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
              +     GAR L+ ++E+ + D+ F A     + +VID  ++
Sbjct: 346 KRGT-----GARGLRAILEKTMVDLMFEAPGSGVRELVIDLPHL 384



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT
Sbjct: 58  KPQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKSNILLIGPTGTGKT 114

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++  LAR    PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 115 LLAETLARFLDVPFAIADATTLTEAGYVGEDVENVILRLLQNA 157


>gi|86151365|ref|ZP_01069580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841712|gb|EAQ58959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + ++  +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394


>gi|218561938|ref|YP_002343717.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|21263489|sp|Q9PIM0|CLPX_CAMJE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|112359644|emb|CAL34429.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
          Length = 417

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 70  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 128

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 129 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 185



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 186 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQI 245

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 246 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 305

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 306 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 365

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + ++  +VI  E V+
Sbjct: 366 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 404


>gi|123443341|ref|YP_001007315.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|6225174|sp|O33873|CLPX_YEREN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215219|sp|A1JNN1|CLPX_YERE8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2580495|gb|AAC45783.1| ClpX [Yersinia enterocolitica]
 gi|122090302|emb|CAL13168.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 423

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L D  +    ++  EK VV
Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVV 398


>gi|121613694|ref|YP_999990.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157414572|ref|YP_001481828.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167004946|ref|ZP_02270704.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205356070|ref|ZP_03222838.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|87250025|gb|EAQ72983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157385536|gb|ABV51851.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205346194|gb|EDZ32829.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394


>gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus influenzae 10810]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397


>gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2846]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397


>gi|210621781|ref|ZP_03292810.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
 gi|210154545|gb|EEA85551.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
          Length = 412

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 71/111 (63%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+E++  L+ Y+IGQ+ AK+A+++A+ N ++R    ++   ++   NILL+GPTG GKT 
Sbjct: 65  PKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSNSENDVDIQKSNILLLGPTGSGKTL 124

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           +++ LA+    PF   + T  TE GYVG +VE I+  L+  A N V ++ +
Sbjct: 125 LAQTLAKTLNVPFAMADATALTEAGYVGEDVENILLKLIQAADNDVEKAEK 175



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNREFIKI 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      + R                             P DLL    
Sbjct: 236 DTTNILFILGGAFDGLEQIIQRRSSEKTLGFGAKIESKKNLDLGKIYENVLPEDLLKYGI 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     IL + ++ L+ QYK+L   E + L+F +D++  +A 
Sbjct: 296 IPEFIGRIPVIATLNMLDEDALVTILKEPKNALVKQYKKLFDIEDVELEFEDDALREIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
            A++ N+     GAR L++++E ++ D  +   S+   + VV+  E V
Sbjct: 356 KAIDRNT-----GARGLRSIVENIMMDTMYEVPSEENVEKVVVTKEAV 398


>gi|297199669|ref|ZP_06917066.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sviceus ATCC 29083]
 gi|197713961|gb|EDY57995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sviceus ATCC 29083]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q         RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQESAKKALSVAVYNHYKRVQAGENGGGSSRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V  ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408


>gi|196230687|ref|ZP_03129548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chthoniobacter flavus Ellin428]
 gi|196225028|gb|EDY19537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chthoniobacter flavus Ellin428]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 62/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG++ +            +Y  +
Sbjct: 187 GIVYIDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPHQEYIQV 246

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T+ ILFI  GAF                                      + P DLL  
Sbjct: 247 STEKILFICGGAFVGLEKMIQKRMGKKVLGFGVSAHEAVEAEVPASEAIRFTEPEDLLSF 306

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L + +  +ILTDT++ +I Q+ +L+  EG+ L+ T+D++ AL
Sbjct: 307 GMIPEFVGRLPVITALDQLTEDELVMILTDTKNAMIKQFTKLLSLEGVSLNVTKDALRAL 366

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
           A  A    +     GAR L++++ER++ DI +   S  D+ E T+
Sbjct: 367 ATEAAKKGT-----GARALRSMLERIMLDIMYDVPSRDDIAEVTI 406



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 13/115 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPKN 55
           P EI  +LD+++IGQ+ AK+ +++A+ N ++R             QQ+      E+   N
Sbjct: 63  PMEIRRQLDQFVIGQERAKKVLSVAVHNHYKRILHNQSLGSGNAVQQMDPLGDVEIEKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +LL+GPTG GKT ++R LAR+   PF   + T  TE GYVG +VE II  L+  +
Sbjct: 123 VLLIGPTGSGKTLLARTLARIIDVPFCIADATTLTEAGYVGEDVENIILRLLQAS 177


>gi|57237331|ref|YP_178344.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           RM1221]
 gi|57166135|gb|AAW34914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni RM1221]
 gi|315057700|gb|ADT72029.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394


>gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
 gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
          Length = 415

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R +    DL  EL   NILL+GPTG GK
Sbjct: 68  TPHQIRAHLDDYVIGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 128 TLLAQTLARQINVPFAIADATTLTEAGYVGEDVENIIQRLL 168



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 181 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLKV 240

Query: 292 NTDHILFIASGAF-----------HVSR------------------------------PA 310
           +T  ILFI  GAF           H  R                                
Sbjct: 241 DTSKILFICGGAFSGLDKIIEKRTHKDRGIGFNANVQSKEKEHDIGELFAQVETEDLIKF 300

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     ILT  ++ LI QY+ L   E + L+FT +++ A+
Sbjct: 301 GLIPEFVGRLPVVASLAELDEEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E VL D  +    L+  K VV+D + +
Sbjct: 361 AKKALARKT-----GARGLRSIVEGVLLDTMYDLPSLEGLKKVVVDQDVI 405


>gi|220909725|ref|YP_002485036.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           7425]
 gi|219866336|gb|ACL46675.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7425]
          Length = 447

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD--ELMPKNILLVGP 61
           PREI   LD ++IGQQ+AK+ +++A+ N ++R     +Q      D  EL   NILL+GP
Sbjct: 84  PREIKKYLDDHVIGQQEAKKILSVAVYNHYKRLSLLQEQSKGGAEDAVELQKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+ V+   V +++R
Sbjct: 144 TGCGKTLLAQTLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVSDLDVEQAQR 201



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 61/213 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312
           +T +ILFI  GAF                                     H+  P DL  
Sbjct: 262 DTTNILFICGGAFVGLEKIVEQRTGKKAMGFVREDGEPQGKEQRTADTLKHLE-PEDLVK 320

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   +  L++     ILT+  + L+ QY++L+K + + L+F  D+I A
Sbjct: 321 FGMIPEFIGRIPVLAVVDPLDEEALSEILTEPRNALVKQYQKLLKMDNVQLEFKPDAIRA 380

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 IAQEAYRRKT-----GARALRAIVEEIMLDVMY 408


>gi|108800542|ref|YP_640739.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp.
           MCS]
 gi|119869681|ref|YP_939633.1| ATP-dependent protease ATP-binding subunit [Mycobacterium sp. KMS]
 gi|126436158|ref|YP_001071849.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp.
           JLS]
 gi|123069914|sp|Q1B601|CLPX_MYCSS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214788|sp|A3Q2I1|CLPX_MYCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214789|sp|A1UJ35|CLPX_MYCSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|108770961|gb|ABG09683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           sp. MCS]
 gi|119695770|gb|ABL92843.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. KMS]
 gi|126235958|gb|ABN99358.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. JLS]
          Length = 426

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLENYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRTEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT D++DA+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTGDALDAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|257055264|ref|YP_003133096.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Saccharomonospora viridis DSM 43017]
 gi|256585136|gb|ACU96269.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Saccharomonospora viridis DSM 43017]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDE---LMPKNILLVGP 61
           P +I   L++YIIGQ DAKR +A+A+ N ++R +  A    D +DE   L   NIL++GP
Sbjct: 64  PADIHEFLEQYIIGQDDAKRTLAVAVYNHYKRIKSDASGTKDSKDEPVELAKSNILMLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T ++LFI +GAF                                    + P DL+    
Sbjct: 242 DTTNVLFIVAGAFAGLEKIINDRIGKRGIGFGAEIRTKQELDESDIFKEAMPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     ILT+  + L  QYK+L + + + L+FT+ +++A+AD
Sbjct: 302 IPEFIGRLPVVASVSNLDKQSLVRILTEPRNALTKQYKKLFEMDNVELEFTKTALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL+ + +
Sbjct: 362 QAL-LRGT----GARGLRAIMEEVLQPVMY 386


>gi|226321181|ref|ZP_03796720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 29805]
 gi|226233414|gb|EEH32156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 29805]
 gi|312149757|gb|ADQ29828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi N40]
          Length = 430

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E + +D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|75909808|ref|YP_324104.1| ATP-dependent protease ATP-binding subunit ClpX [Anabaena
           variabilis ATCC 29413]
 gi|123745060|sp|Q3M727|CLPX_ANAVT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|75703533|gb|ABA23209.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Anabaena
           variabilis ATCC 29413]
          Length = 446

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILLV 59
           PREI   LD ++IGQ +AK+ +++A+ N ++R  +          AD   EL   NILL+
Sbjct: 82  PREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSSKNGADDAVELQKSNILLI 141

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 GPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R AD+L            
Sbjct: 262 DTSNILFICGGAFVGLEKVVDQRGGKKSIGFVQPGEGQSKEKRAADVLRHLEPDDLVKFG 321

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   +  L++     ILT   S L+ QY++L+K + + LDF  D++ A+A
Sbjct: 322 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALKAIA 381

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLDVMY 407


>gi|86153860|ref|ZP_01072063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842821|gb|EAQ60033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 407

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDGTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394


>gi|313894820|ref|ZP_07828380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|312976501|gb|EFR41956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
          Length = 421

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ +AK+++++A+ N ++R        D  EL   NIL++GPTG GK
Sbjct: 64  PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DL+    
Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL+++    ILT+ ++ L+ Q++ L+  +G+ L F +D++  +A 
Sbjct: 297 IPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQDALHLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLH 422
            A+   +     GAR L++++E ++ ++ +    +Q  T   +  E V  H
Sbjct: 357 EALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTACQVTKEVVANH 402


>gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
 gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
          Length = 411

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397


>gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
 gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
          Length = 411

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397


>gi|88810848|ref|ZP_01126105.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
 gi|88792478|gb|EAR23588.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
          Length = 419

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PRE+   LD+Y+IGQ+ AK+ +++A+ N ++R    + L D EL   NILL+GP+G GKT
Sbjct: 71  PRELHDFLDQYVIGQEHAKKVLSVAVYNHYKRIGCCSALGDPELGKSNILLIGPSGSGKT 130

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
            ++  LAR    PF+  + T  TE GYVG +V+ +IR LV    N
Sbjct: 131 LLAETLARRLAVPFLIADATALTETGYVGEDVDGLIRRLVQSCDN 175



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 61/248 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLL----- 276
           D+D + R  +Q  +N       GIV+LDE DK+  R +      VS EGVQ+ LL     
Sbjct: 161 DVDGLIRRLVQSCDNDAQRASLGIVYLDEVDKLAVRHTVSRSRDVSGEGVQQALLRFMDS 220

Query: 277 ------PLVEGSSVSTKYGSINTDHILFIASGAFH------------------VSRPAD- 311
                 P   G++   ++  ++T  ILFI  GAF                   V  P   
Sbjct: 221 SVVRFAPRERGAARRPEWLEVDTRQILFICGGAFEGLAQLVERRRRGHGIGFTVDLPGPR 280

Query: 312 ------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR PV   L  L++     +LT+  + L+ QY +L+
Sbjct: 281 RCSNFLAYAEADDLIHYGLIPEFVGRLPVVSVLDPLDEDALVRVLTEPANALVRQYTKLL 340

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
             +G  L FT  ++ ALA  A+   +     GAR L+TV+ERVL +  +     +E + +
Sbjct: 341 AMDGCELHFTRGALHALAQEALARGT-----GARGLRTVIERVLLEPMYRLPRQREVQCL 395

Query: 413 VIDAEYVR 420
            ID   VR
Sbjct: 396 TIDERAVR 403


>gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittEE]
 gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittEE]
          Length = 411

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397


>gi|255321157|ref|ZP_05362323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SK82]
 gi|255301711|gb|EET80962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SK82]
          Length = 438

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  + +      E+   NILL+GPTG
Sbjct: 63  PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGQKTEDKVEIAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T ++LFI  GAF                                       PADL    
Sbjct: 239 DTSNVLFICGGAFSGLEKIVQHRQEKGGIGFTAEVKSKDETKKLAELFRQVEPADLVKFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 299 LIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRAVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L++++E VL
Sbjct: 359 KKALERNT-----GARGLRSILENVL 379


>gi|283455720|ref|YP_003360284.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium dentium Bd1]
 gi|283102354|gb|ADB09460.1| clpX ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium dentium Bd1]
          Length = 440

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 142/325 (43%), Gaps = 91/325 (28%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           SD   D++VA      SN  + G   VG   L++  +KVM                P ++
Sbjct: 119 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 159

Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268
            D +          D++TV +  IQ  +        GIV++DE DKI AR SG    ++R
Sbjct: 160 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 218

Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304
               EGVQ+ LL ++EG+  S                I+T  ILFI  GAF         
Sbjct: 219 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 278

Query: 305 ---------------H-------VSRPA-------DLLPEIQGRFPVRVHLKSLNKSDFR 335
                          H       ++R +        LLPE  GR PV   L+ L + D  
Sbjct: 279 RLGARESGFGAAWHDHEVPKRELLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 338

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT  E+ L+ QY++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+
Sbjct: 339 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 393

Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419
            LED  F    L + + V++DA  V
Sbjct: 394 TLEDTMFQLPSLDDVSEVIVDAASV 418



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50
           P +I + LD Y++GQ+ AKR +++A+ N ++R  +     A+L D              +
Sbjct: 67  PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 126

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 127 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 186


>gi|297568326|ref|YP_003689670.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924241|gb|ADH85051.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 594

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 9/123 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKN 55
           F+ +P E+++ LD+Y++GQ++AK  +A  +   + R          +  +      +  N
Sbjct: 65  FDLAPEELIAHLDQYVVGQEEAKAILATKICTHFNRISRSLSRPGGEAGSGRNVGRIKNN 124

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +LL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE +IRDLV  A N + 
Sbjct: 125 VLLIGPTGVGKTYLIKLIAQHIGVPFVKGDATKFSETGYVGGDVEDLIRDLVREADNDLE 184

Query: 116 ESR 118
            +R
Sbjct: 185 RAR 187



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 117/295 (39%), Gaps = 84/295 (28%)

Query: 182 PGGASVGILNLSELFSKVM-----GSGRKKKIRMSVQKCYPELMRDESDRLI-------D 229
           PGG +    N+  + + V+     G G+   I++  Q      ++ ++ +         D
Sbjct: 108 PGGEAGSGRNVGRIKNNVLLIGPTGVGKTYLIKLIAQHIGVPFVKGDATKFSETGYVGGD 167

Query: 230 MDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           ++ + RD ++  +N      +GIV+LDE DKI       G+ VSR GVQR LL  +E + 
Sbjct: 168 VEDLIRDLVREADNDLERARFGIVYLDEVDKIAGGVDRRGLDVSRSGVQRALLKPMEETE 227

Query: 284 VSTKY----------------------GSINTDHILFIASGAFH---------------- 305
           V  K                        SINT HILFI SGAF                 
Sbjct: 228 VEMKVPHDPIAMMEAVEHYRLTGKRQRKSINTRHILFIMSGAFSGLDEIIGRRLQQRSIG 287

Query: 306 ------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                              +R  DL+      E  GR PV   L  L++ D   IL+   
Sbjct: 288 FENTVAAAAPARPGALMARARAEDLVEYGFESEFIGRLPVLAVLSELSEDDLYEILSSPN 347

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           S +++  K+  +  GI L F ED+            ST    GAR L +VMERVL
Sbjct: 348 SAVVVGKKQDFRAYGIELRF-EDAALRKLAALAAREST----GARALVSVMERVL 397


>gi|193216008|ref|YP_001997207.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroherpeton
           thalassium ATCC 35110]
 gi|226706580|sp|B3QWK0|CLPX_CHLT3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193089485|gb|ACF14760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chloroherpeton thalassium ATCC 35110]
          Length = 431

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P EI  EL++Y++GQ+ AK+A+A+A+ N ++R +    L +E    +   NILL+GPTG 
Sbjct: 75  PTEIRDELNKYVVGQERAKKALAVAVYNHYKRIESQEWLLEEDDVVIEKSNILLIGPTGT 134

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA +   PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 135 GKTLLAQTLANILDVPFTIVDATSLTEAGYVGDDVESILARLLQAA 180



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 190 GIIYIDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGTVAGVPPKGGRKHPEQHLI 247

Query: 290 SINTDHILFIASGAFH-----VSR-----------------------------PADL--- 312
           ++NT +ILFI  GAF      +SR                             P DL   
Sbjct: 248 NVNTKNILFICGGAFEGLEKVISRRLAQNAMGFGTAITAASEKESIELISKVTPEDLYQF 307

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR P    L  LNK   + IL + ++ +  QYK+L + E + L F  D++D +
Sbjct: 308 GLIPEFIGRMPFIATLDPLNKEALKNILIEPKNAITKQYKKLFEMENVELIFDTDALDLV 367

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            D AV   +     GAR L++V+E V+ +I F   ++ E KT +I  E +
Sbjct: 368 VDTAVKRGT-----GARALRSVLEEVMLNIMFDLPNMNEVKTCIITKECI 412


>gi|289178844|gb|ADC86090.1| ClpX [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 460

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 60/230 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYGS--------- 290
           +GIV++DE DKI AR SG+   ++R    EGVQ+ LL ++EG+ V               
Sbjct: 217 HGIVYIDEVDKI-ARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHVPVDGAHRHKDGET 275

Query: 291 --INTDHILFIASGAFH-----VSR----------------PAD---------------- 311
             ++T  ILFI  GAF      VSR                P D                
Sbjct: 276 VELDTSDILFICGGAFVGLDEIVSRRLGRHESGFGASWRVNPIDEHEIYRQVNADDLAEF 335

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            LLPE  GR PV   L  L   D + +LT   + L+ QY++L   +G+ L FT+ +++A+
Sbjct: 336 GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTNALLKQYQKLFSVDGVTLTFTDAAVEAI 395

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A  A+        +GAR L++++E +LE+  F   ++ + T VV++A+ V
Sbjct: 396 ASTALERG-----VGARGLRSIIESILEETMFELPNMDDVTEVVVNADCV 440



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 58/236 (24%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------------LPADLRDELM 52
           P +I   LD+Y+IGQ DAKR +++A+ N ++R Q                L    R  L 
Sbjct: 83  PSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSILD 142

Query: 53  P--------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           P         NILL+GPTGVGKT +++ LA+    PFI V+ T  TE GYVG +VE ++ 
Sbjct: 143 PLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVLS 202

Query: 105 DLVDVAINIVRESRR-----DEV--------------REQASINAEERILDALVGKTATS 145
            L+  A   V  +R      DEV              R+ +    ++ +L  L G     
Sbjct: 203 RLLQAADGDVDRARHGIVYIDEVDKIARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHV 262

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 R K  DGE    E+D      +SDI    I GGA VG   L E+ S+ +G
Sbjct: 263 PVDGAHRHK--DGETV--ELD------TSDI--LFICGGAFVG---LDEIVSRRLG 303


>gi|212704617|ref|ZP_03312745.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
 gi|212672016|gb|EEB32499.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
          Length = 425

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            SP+EI + LD Y+IGQ +AK+ +++A+ N ++R      L D  EL   NILLVGP+G 
Sbjct: 64  LSPQEIKARLDEYVIGQTEAKKILSVAVHNHYKRVFFADALGDDVELEKSNILLVGPSGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 169



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 179 GIIYIDEIDKISRKSDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                     +P DL     
Sbjct: 239 DTSNILFIVGGAFVGLDKIVGSRMSGSSMGFGAQVCSKKEMPLGELLEKIQPQDLVKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+  H+  L+++D   ILT+ ++ L+ QY++L + + + L FT +++ A+A 
Sbjct: 299 IPEFVGRIPIITHVDDLDEADLVRILTEPKNALVRQYQKLFELDHVQLRFTPNALKAIAA 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ VMER + DI F
Sbjct: 359 RAIERKT-----GARGLRNVMERTMLDIMF 383


>gi|125717923|ref|YP_001035056.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           sanguinis SK36]
 gi|323351645|ref|ZP_08087299.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|166215215|sp|A3CMV1|CLPX_STRSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125497840|gb|ABN44506.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Streptococcus sanguinis SK36]
 gi|322122131|gb|EFX93857.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|324991227|gb|EGC23161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK353]
 gi|324992983|gb|EGC24903.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK405]
 gi|324995708|gb|EGC27620.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK678]
 gi|325687395|gb|EGD29416.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK72]
 gi|325689773|gb|EGD31777.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK115]
 gi|325694581|gb|EGD36490.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK150]
 gi|325696427|gb|EGD38317.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK160]
 gi|327462279|gb|EGF08606.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1]
 gi|327470116|gb|EGF15580.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK330]
 gi|327489632|gb|EGF21424.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1058]
 gi|328946144|gb|EGG40289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1087]
 gi|332361329|gb|EGJ39133.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1056]
          Length = 409

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  ++P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDSSYMQEIISEDVQKFGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + L+F ED++  +A+ A
Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380


>gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae Rd KW20]
 gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus
           influenzae F3031]
 gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1168980|sp|P44838|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus
           influenzae Rd KW20]
 gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3031]
 gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 411

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397


>gi|302206718|gb|ADL11060.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis C231]
          Length = 428

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R           +   D   EL   NIL+
Sbjct: 67  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186

Query: 119 R 119
           R
Sbjct: 187 R 187



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312
           +T +ILFI +GAF                       S+             P DL     
Sbjct: 248 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 307

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD
Sbjct: 308 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
           +A+   +     GAR L+ +ME +L  + +   D ++  VV + A  VR
Sbjct: 368 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAASVR 411


>gi|254582589|ref|XP_002499026.1| ZYRO0E01826p [Zygosaccharomyces rouxii]
 gi|238942600|emb|CAR30771.1| ZYRO0E01826p [Zygosaccharomyces rouxii]
          Length = 504

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 192/458 (41%), Gaps = 118/458 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40
           +PR I + LD YI+GQ  +K+ +++A+ N + R                           
Sbjct: 35  TPRNIKAHLDDYIVGQDKSKKVLSVAVYNHYLRNHDKSRKSELQKARTLIWEETQRREKE 94

Query: 41  --------------------QQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAG 78
                               QQL A   D+L+    N++++GP+G GKT ++  LA++  
Sbjct: 95  RQDKLGYESSESKAGLKNLQQQLLAHPDDDLVLSKSNLMMIGPSGSGKTLMATTLAKMLD 154

Query: 79  APFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            P    + T+ T+ GY+G +VE  I R LV+   ++ +  R   V ++         +D 
Sbjct: 155 VPIAITDCTQLTQAGYIGDSVEVCIERLLVNADFDVSKAERGIIVLDE---------VDK 205

Query: 138 LVGKTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           L    A   T++V  +       K+ +G   +  +   V   + + +N          ++
Sbjct: 206 LAKPAANIGTKDVSGEGVQQALLKIIEGHNVEVTVKRPVKQGTDNKNNQTAAKKDETFVI 265

Query: 191 NLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           + S +   +MG+  G  K+I          + R + DR +D     +DS + +E   + F
Sbjct: 266 DTSNILFMIMGAFVGLDKRI----------VKRVKGDRGLDESKEEKDSKEEIEK--LRF 313

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            +  ++I   D GNG    +E     + P               TD I F          
Sbjct: 314 SNTIEQI---DLGNG---KKETALNLVTP---------------TDLISF---------- 342

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  TE ++ 
Sbjct: 343 --GLIPELIGRVPIITALQPLERDDLYHILKEPKNALLEQYRYIFKQFGVQLCITEKALQ 400

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            +A  A+   +     GAR L+ +MER+L ++++   D
Sbjct: 401 RVAQFALREGT-----GARGLRGIMERLLLNVNYECPD 433


>gi|327460433|gb|EGF06770.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1057]
 gi|327474152|gb|EGF19562.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK408]
 gi|332360699|gb|EGJ38508.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK49]
 gi|332360755|gb|EGJ38563.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK355]
          Length = 409

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  ++P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDGSYMQEIISEDVQKFGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + L+F ED++  +A+ A
Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380


>gi|323451659|gb|EGB07535.1| hypothetical protein AURANDRAFT_64611 [Aureococcus anophagefferens]
          Length = 1035

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 24/172 (13%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVG 60
           F  +P EI   LD  ++GQ  AKRA+A+A+   +    R  + P         KN+LL+G
Sbjct: 325 FRMTPAEIKRALDLEVVGQHAAKRAIAVAVAEHYGHARRCLEDPTRKDATWHKKNLLLLG 384

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA--------IN 112
           P+G GKT + R LA++  A ++K + TKF+  GYVGR+V+ ++  LVD A          
Sbjct: 385 PSGCGKTQLCRALAKVVDAAYVKADATKFSATGYVGRDVDDVVAQLVDAAGDDREAAEFG 444

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREV---FRKKLRDGEIS 161
           +V     D+V E+            L+G  A+ NTR+V     K + D E++
Sbjct: 445 VVHVDEIDKVCERPG---------GLLGGGASVNTRDVQTSLLKLMEDAELA 487



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 43/230 (18%)

Query: 244 YGIVFLDEFDKIVARDS---GNGIGVSREGVQRDLLPLVE---------GSSVSTKYG-- 289
           +G+V +DE DK+  R     G G  V+   VQ  LL L+E         G  VS + G  
Sbjct: 443 FGVVHVDEIDKVCERPGGLLGGGASVNTRDVQTSLLKLMEDAELAVGNKGPPVSVRAGAK 502

Query: 290 ----SINTDHILFIASGAF----------HVSRP-------ADLLPEIQGRFPVRVHLKS 328
               + +T  +L+I SG F            + P       + L+ E  GR PVR  L  
Sbjct: 503 PASATFSTKFVLWIFSGTFLPLLDRLAREGAAGPSARDLVESGLIHEFVGRVPVRCALDP 562

Query: 329 LNKSDFRLIL-TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           L+  D   IL  D   + + Q K   +T  I L   +D+++A+A+ A+        +GAR
Sbjct: 563 LSADDLVSILAADGAMSPLHQQKAYFETYDIELTVGDDALEAIAERAL-----AHGLGAR 617

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDA--EYVRLHIGDFPSETDMYHF 435
            L + ++ VL   +F         + +DA  + V+      P+  + +H 
Sbjct: 618 ALVSELDAVLRGFAFHLPSADADRLHLDAALDVVKRLCKTDPATVEHFHI 667


>gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
 gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
          Length = 396

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 59/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNATVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A  A+   +     GAR L++++E VL D  +    L+
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLE 389


>gi|145223178|ref|YP_001133856.1| ATP-dependent protease ATP-binding subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|315443636|ref|YP_004076515.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. Spyr1]
 gi|189044140|sp|A4T2N8|CLPX_MYCGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145215664|gb|ABP45068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           gilvum PYR-GCK]
 gi|315261939|gb|ADT98680.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. Spyr1]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIRDFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRAEPVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVHSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+F ED+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFAEDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|238898002|ref|YP_002923682.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465760|gb|ACQ67534.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 436

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 4/102 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  L   + D  EL   NILL+GPTG G
Sbjct: 78  TPHQIRAHLDDYVIGQEAAKKVLSVAVYNHYKR--LSHSIPDGVELGKSNILLIGPTGSG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 136 KTLLAETLARFLNVPFTIADATVLTEAGYVGEDVENIIQKLL 177



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 95/234 (40%), Gaps = 69/234 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 190 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 249

Query: 292 NTDHILFIASGAFHVSRPADL--------------------------------------- 312
           +T  ILFI  GAF     ADL                                       
Sbjct: 250 DTSKILFICGGAF-----ADLNKVIEQRLNTGTGIGFNATVKGAREKTNEDKILSQVETE 304

Query: 313 -------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                  +PE  GR PV   L  LN+     IL   ++ L  QY+ L   EG+ L+F  +
Sbjct: 305 DLVKFGLIPEFIGRLPVIAVLDQLNEEALIQILKAPKNALTKQYQALFHLEGVELEFHYN 364

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++ A+A  A+     V   GAR L++++E  L D  +     +  + V+  E V
Sbjct: 365 ALKAIAKKAL-----VRKTGARGLRSIVENTLLDTMYDLPSTENVSKVVVNESV 413


>gi|332798602|ref|YP_004460101.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Tepidanaerobacter sp. Re1]
 gi|332696337|gb|AEE90794.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Tepidanaerobacter sp. Re1]
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y++GQ+ AK+ +++A+ N ++R      + D EL   NI+++GPTG GKT
Sbjct: 64  PHEIKDILDQYVVGQEQAKKTLSVAVYNHYKRINYQNKIDDVELQKSNIVMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 236 DTTNILFICGGAFEGIGDIIQNRIGKKSIGFEAEIQSQEQKNIGEILKHL-MPEDLLKYG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L +L+++    IL + ++ L+ QY++L + +   L+FT+D++  +A
Sbjct: 295 MIPEFVGRLPVIVTLSALDENALIKILKEPKNALVKQYQKLFEMDNSQLEFTDDALMVIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+ ++E V+ DI +
Sbjct: 355 QEAIRRKT-----GARGLRAILEEVMLDIMY 380


>gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
 gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
          Length = 411

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 99/227 (43%), Gaps = 59/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           A  A+   +     GAR L++++E VL D  +    L+    VI  E
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVGE 398


>gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittGG]
 gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittGG]
          Length = 411

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397


>gi|114567170|ref|YP_754324.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338105|gb|ABI68953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 416

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I   LD Y+IGQ  AK+++A+A+ N ++R  L   L D EL   NI+++GPTG GK
Sbjct: 63  KPQDIREILDDYVIGQDRAKKSLAVAVYNHYKRINLGMKLDDVELQKSNIMMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  ++  P DLL    
Sbjct: 236 DTSNILFICGGAFEGIDKIIENRVGQKVMGFGADIKSREEKKIGEILNMILPQDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L++L+      ILT+ ++ L+ QYK+L + +G+ L+F ED++ A+AD
Sbjct: 296 IPEFVGRVPIIVTLEALDMDALISILTEPKNALVKQYKKLFELDGVDLEFKEDALQAIAD 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ ++ +
Sbjct: 356 EALRRNT-----GARGLRAIIEDIMLEVMY 380


>gi|332366632|gb|EGJ44375.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1059]
          Length = 409

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E    L   NIL++GPTG 
Sbjct: 64  PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     +R  D                  ++P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDGSYMQEIISEDVQKFGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + L+F E+++  +A+ A
Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEEALQEIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380


>gi|183601400|ref|ZP_02962770.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683457|ref|YP_002469840.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191100|ref|YP_002968494.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196506|ref|YP_002970061.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219006|gb|EDT89647.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621107|gb|ACL29264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249492|gb|ACS46432.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251060|gb|ACS47999.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794089|gb|ADG33624.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 442

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 60/230 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST--------KYGS- 290
           +GIV++DE DKI AR SG+   ++R    EGVQ+ LL ++EG+ V          K G  
Sbjct: 199 HGIVYIDEVDKI-ARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHVPVDGAHRHKDGET 257

Query: 291 --INTDHILFIASGAFH-----VSR----------------PAD---------------- 311
             ++T  ILFI  GAF      VSR                P D                
Sbjct: 258 VELDTSDILFICGGAFVGLDEIVSRRLGRHESGFGASWRVNPIDEHEIYRQVNADDLAEF 317

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            LLPE  GR PV   L  L   D + +LT   + L+ QY++L   +G+ L FT+ +++A+
Sbjct: 318 GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTNALLKQYQKLFSVDGVTLTFTDAAVEAI 377

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A  A+        +GAR L++++E +LE+  F   ++ + T VV++A+ V
Sbjct: 378 ASTALERG-----VGARGLRSIIESILEETMFELPNMDDVTEVVVNADCV 422



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 58/236 (24%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------------LPADLRDELM 52
           P +I   LD+Y+IGQ DAKR +++A+ N ++R Q                L    R  L 
Sbjct: 65  PSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSILD 124

Query: 53  P--------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           P         NILL+GPTGVGKT +++ LA+    PFI V+ T  TE GYVG +VE ++ 
Sbjct: 125 PLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVLS 184

Query: 105 DLVDVAINIVRESRR-----DEV--------------REQASINAEERILDALVGKTATS 145
            L+  A   V  +R      DEV              R+ +    ++ +L  L G     
Sbjct: 185 RLLQAADGDVDRARHGIVYIDEVDKIARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHV 244

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 R K  DGE    E+D      +SDI    I GGA VG   L E+ S+ +G
Sbjct: 245 PVDGAHRHK--DGETV--ELD------TSDI--LFICGGAFVG---LDEIVSRRLG 285


>gi|153951402|ref|YP_001398676.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938848|gb|ABS43589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 406

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 59  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 117

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 118 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 165



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 175 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 234

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 235 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 295 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 355 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 393


>gi|89073231|ref|ZP_01159761.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
 gi|89050941|gb|EAR56405.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQTDTLSDLFEKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A++  +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 361 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|86608810|ref|YP_477572.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502535|sp|Q2JLU2|CLPX_SYNJB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86557352|gb|ABD02309.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 448

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           P+EI+  LD+Y+IGQ+ AK+ +++A+ N ++R    A+            EL   NIL++
Sbjct: 82  PQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILII 141

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 GPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF-------------------------HVSR------------PADLL- 313
           +T +ILFI  GAF                          VSR            P DL+ 
Sbjct: 262 DTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLSVSREQRMANALKALEPEDLIK 321

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV   L  L++     ILT  ++ ++ Q ++L++ +G+ L+F   +I A
Sbjct: 322 YGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAIAA 381

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A    +     GAR L+ ++E ++ D+ + A   ++ K + I AE V
Sbjct: 382 IAKEAYRRKT-----GARALRAIVEELMLDVMYEAPSRRDLKYIRITAEMV 427


>gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 427

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 14/107 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+G
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL +  +    + +   VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMNDVSKVVID 401


>gi|259909253|ref|YP_002649609.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae
           Ep1/96]
 gi|224964875|emb|CAX56397.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Erwinia pyrifoliae Ep1/96]
 gi|310766843|gb|ADP11793.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp.
           Ejp617]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.4-21]
          Length = 411

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  S+  + G          +
Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKKQSLSELFRQVEPDDLMKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +++ A+
Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  + V++D
Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397


>gi|291460375|ref|ZP_06599765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416942|gb|EFE90661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 438

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R  + + ++D E+   NILL+G TG G
Sbjct: 64  LKPKEIKGFLDEYVIGQDEAKKVLSVAVYNHYKR--ISSRIQDIEVQKSNILLIGATGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166



 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 175 YGIIYIDEVDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQ 234

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           INT +ILFI  GAF                                     +P DL    
Sbjct: 235 INTKNILFICGGAFDGLEKIIEKRIASGSIGFGAEIVEKNRNSYDELLKKVQPEDLVKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+ V L+S +    + ILT+ ++ LI QY+ L + +G+ L FTED+I A+A
Sbjct: 295 LIPEFIGRVPIDVELESHDVESLKRILTEPKNALIRQYQRLFELDGVELSFTEDAIRAVA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+   +     GAR L+++ME ++  + +
Sbjct: 355 EKAIQRKT-----GARGLRSIMEDIMMGLMY 380


>gi|192361200|ref|YP_001982471.1| ATP-dependent protease ATP-binding subunit ClpX [Cellvibrio
           japonicus Ueda107]
 gi|238692439|sp|B3PHK5|CLPX_CELJU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|190687365|gb|ACE85043.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellvibrio
           japonicus Ueda107]
          Length = 433

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 5/104 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRD----ELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R +      +D    EL   NILLVGPTG
Sbjct: 70  PHEISAILDQYVIGQKRAKKVLAVAVYNHYKRLRFGDKTAKDKEPVELGKSNILLVGPTG 129

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 130 SGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 173



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 186 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 245

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H   P DL    
Sbjct: 246 DTSNILFICGGAFAGLDKVIRDRSEKGGIGFAAEVKSKDDKRNFGETLHDLEPEDLVRYG 305

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L+K+    ILT+ ++ L  QY +L + EG+ +DF  D++DA+A
Sbjct: 306 LIPEFVGRLPVIATLDELDKAALIQILTEPKNALTKQYGKLFEMEGVQIDFRPDALDAVA 365

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+   +     GAR L+++ME VL D  +
Sbjct: 366 ERALERKT-----GARGLRSIMESVLLDTMY 391


>gi|120404990|ref|YP_954819.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           vanbaalenii PYR-1]
 gi|166214792|sp|A1TCB3|CLPX_MYCVP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119957808|gb|ABM14813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           vanbaalenii PYR-1]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRSEPVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGLGFGAEVKSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL+  ++ L+ QY  L + +G+ L+F ED+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVQILSQPKNALVKQYTRLFEMDGVELEFAEDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|282866709|ref|ZP_06275749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. ACTE]
 gi|282558408|gb|EFB63970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. ACTE]
          Length = 431

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RD---ELMPKNILLVGPT 62
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q   +    RD   EL   NILL+GPT
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGANRDDAIELAKSNILLLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 241 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 301 IPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 361 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 407


>gi|171463606|ref|YP_001797719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|226706593|sp|B1XUS8|CLPX_POLNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171193144|gb|ACB44105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 453

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 29/141 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD----------------- 49
           +P +I   LD+Y+IGQ  AK+ +A+A+ N ++R Q LP   ++                 
Sbjct: 67  TPHQIRKNLDQYVIGQDHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEGSDKKES 126

Query: 50  -----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
                      EL   NILL+GPTG GKT +++ LAR+   PF+  + T  TE GYVG +
Sbjct: 127 KLPAKAMVDDVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186

Query: 99  VEQIIRDLVDVAINIVRESRR 119
           VE II+ L+      V +++R
Sbjct: 187 VENIIQKLLQACDYNVEKAQR 207



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 267

Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313
           +T +ILFI  GAF                             VS       P DL+    
Sbjct: 268 DTTNILFICGGAFDGLEKVIQQRTAKTGIGFNATVPGKDDRGVSDLLIEVEPEDLIKFGL 327

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L+  EG  L+   +++ A+A 
Sbjct: 328 IPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAK 387

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L++++E  L D+ +    L+  + V+ID
Sbjct: 388 KAIARKT-----GARGLRSILEGSLMDVMYDLPSLKNVQKVIID 426


>gi|38234360|ref|NP_940127.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|61211524|sp|Q6NFU7|CLPX_CORDI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|38200623|emb|CAE50319.1| Putative ATPase [Corynebacterium diphtheriae]
          Length = 430

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59
           P +I + LD+Y+IGQ DAKR +++A+ N ++R          +  ++   EL   NIL++
Sbjct: 67  PSQISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRTTHKRASEEETELQKSNILML 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++R
Sbjct: 127 GPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQR 186



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 187 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 246

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI +GAF                     ++  AD                   L
Sbjct: 247 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTTKADTDAVDVFRDVLPEDLVKFGL 306

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L+++    +LT+  ++L+ QY+ L   + + L+F  +++ A+AD
Sbjct: 307 IPEFIGRLPIVATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIAD 366

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A++  +     GAR L+ +ME +L  + +   D ++  VV
Sbjct: 367 LAIDRGT-----GARGLRAIMEELLVPVMYDIPDREDVAVV 402


>gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
 gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
          Length = 420

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + L+ Y+IGQ  AKR +++A+ N ++R +        EL   NILLVGPTG GK
Sbjct: 66  TPSEIFATLNDYVIGQNSAKRNLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE II  L+
Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLL 166



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 65/247 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313
            ++T +ILFI  GAF                    HV              S P DLL  
Sbjct: 237 QVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPEKRKVGELLEKSEPEDLLKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+      IL + ++ L+ QY++L + E + L FT++++ A+
Sbjct: 297 GLIPEFVGRLPVIATLHDLDVDALVTILKEPKNALVKQYRKLFELEDVDLTFTDEALVAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV-------RLH 422
           A+ A+   +     GAR L++++E +L D  F   D++    +VID + V       R+H
Sbjct: 357 AERAIKRKT-----GARGLRSIVEGILLDTMFDLPDMEGVAEIVIDQDVVEGKKDPIRVH 411

Query: 423 IGDFPSE 429
            G+   E
Sbjct: 412 GGEAKEE 418


>gi|256850970|ref|ZP_05556359.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661184|ref|ZP_05862098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934115|ref|ZP_06339393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|297205852|ref|ZP_06923247.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616032|gb|EEU21220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548121|gb|EEX24097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301729|gb|EFA93995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|297148978|gb|EFH29276.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           jensenii JV-V16]
          Length = 427

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD Y++GQ  AK+ +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT
Sbjct: 65  PVEIKKQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 YLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 58/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKI 236

Query: 292 NTDHILFIASGAF-------------------------HVSRPAD--------------- 311
           +T +ILFI  GAF                              AD               
Sbjct: 237 DTKNILFIVGGAFDGIEGIVKSRLGKKTIGFGAESKFDEFDHDADSWNKYLTTGDLVKFG 296

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L K+D   ILT+ ++ L+ QY++L + + + L F++ +++A++
Sbjct: 297 LIPEFIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFEIDKVNLHFSDGALEAIS 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           + A+  N     +GAR L+T++E  + D  ++
Sbjct: 357 EQALERN-----MGARGLRTIIENAMMDTMYT 383


>gi|114771110|ref|ZP_01448550.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|114548392|gb|EAU51278.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
          Length = 420

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AKR +++A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 65  TPAKICQILDDYVIGQDVAKRVLSVAVHNHYKRLDHSDTNEEIELSKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARVIDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAER 177



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLKV 237

Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313
           +T +ILFI  GAF                          SR          P DLL    
Sbjct: 238 DTTNILFICGGAFAGLDKIISQRGQGSGIGFGADVKDEESRGIGEIFSEMEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     IL++ ++ L+ QY+ L   E   L FT++++ A+A 
Sbjct: 298 IPEFVGRLPVLATLTDLDEDALVTILSEPKNALVKQYQTLFSLENTNLTFTDEALKAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L++++E +L +  F    L+
Sbjct: 358 RAIARKT-----GARGLRSILEDILLNTMFELPGLK 388


>gi|328957599|ref|YP_004374985.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp.
           17-4]
 gi|328673923|gb|AEB29969.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp.
           17-4]
          Length = 415

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   L+ Y+IGQ+ AK+++++A+ N ++R  Q+  + +D  EL   NI L+GPTG G
Sbjct: 64  PHEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQMGGEEKDGIELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAA 168



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 178 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 237

Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314
           +T +ILFI  GAF                                    P DLL     P
Sbjct: 238 DTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKLDESQSVMQQIIPEDLLKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L + D   ILT  ++ L+ QYK+L+  + + L+F +DS+  +A  A
Sbjct: 298 EFIGRLPVMAALEKLTEDDLVHILTKPKNALVKQYKKLLALDEVELEFEDDSLTEIAKKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +  N+     GAR L++++E ++ +I F
Sbjct: 358 IERNT-----GARGLRSIIESIMLEIMF 380


>gi|283955251|ref|ZP_06372752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793288|gb|EFC32056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 407

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    A+L+D   EL   NILLVGPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDGKEENKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ ++ QY++L   +G+ L F ED++ A+A +A+ 
Sbjct: 296 IGRLHVIASLNELNEEDMIRILTEPKNAIVKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E V+
Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394


>gi|300780634|ref|ZP_07090489.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533620|gb|EFK54680.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------ADLRDE---LMPKNILLV 59
           P EI S LD+Y+IGQ  AKR +A+A+ N ++R +        A  RDE   +   NILL+
Sbjct: 67  PSEITSFLDQYVIGQDRAKRTLAVAVYNHYKRVRTEKSAASGARKRDEDVEIAKSNILLL 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 GPTGSGKTYLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 177



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 57/214 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 187 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQL 246

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     +P DL     
Sbjct: 247 DTTNILFIVAGAFDGLDKVIAERVGKKGIGFGAEIDSAAEREEANMLAQVQPEDLVKFGL 306

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +++L++     +LT+ +++L+ QY+ L   +G  L F + ++ A+A 
Sbjct: 307 IPEFIGRLPILAAVENLDEESMVRVLTEPKNSLVKQYQRLFNMDGAQLRFDDGALSAVAK 366

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            A    +     GAR L+ +ME +L  I +   D
Sbjct: 367 KAAERGT-----GARGLRAIMEEILVPIMYDLPD 395


>gi|118469529|ref|YP_888934.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           smegmatis str. MC2 155]
 gi|166214787|sp|A0R196|CLPX_MYCS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118170816|gb|ABK71712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           smegmatis str. MC2 155]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVIGQDSAKRTLAVAVYNHYKRIQAGEKSRDSRSEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K+    IL++ ++ L+ QY  L + +G+ L+FTE++++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKASLVKILSEPKNALVKQYVRLFEMDGVELEFTEEALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|167769422|ref|ZP_02441475.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
 gi|167668390|gb|EDS12520.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
          Length = 465

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI  +LD Y+IGQ+ AK A+++A+ N ++R     D+ D EL   N+LL+GPTGVG
Sbjct: 96  LKPHEIKEKLDEYVIGQERAKIALSVAVYNHYKRIYF-GDVGDVELSKTNVLLLGPTGVG 154

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 155 KTLLAQTLARMLNVPFAIADATTLTEAGYVGEDVENILLRLLQAA 199



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 209 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQI 268

Query: 292 NTDHILFIASGAFH-----VSRPAD--------------------------------LLP 314
           +T  ILFI  GAF      + R  D                                L+P
Sbjct: 269 DTKDILFICGGAFEGIDKIIERRTDKSSLGFSSTLKNVKARDRLVQQVIPQDLVKFGLIP 328

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L++L++     ILT+ +++L+ QYK+L   + + L F + +++A+AD A
Sbjct: 329 ELVGRTPVLTALEALDRDALVRILTEPKNSLVRQYKQLFSLDNVELTFEDGALEAIADKA 388

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L+ ++E  L  + +
Sbjct: 389 IERKT-----GARGLRAILEETLGPLMY 411


>gi|313204334|ref|YP_004042991.1| ATP-dependent clp protease ATP-binding subunit clpx [Paludibacter
           propionicigenes WB4]
 gi|312443650|gb|ADQ80006.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paludibacter
           propionicigenes WB4]
          Length = 410

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIAV 234

Query: 292 NTDHILFIASGAFH------VSR---------------------------PADL-----L 313
           NT +ILF+  GAF        SR                           P DL     +
Sbjct: 235 NTQNILFVCGGAFDGIEKKIASRLNTRVVGYNAAKEHEQIDKHNMLQYIAPQDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L+ L++S  R ILT+ ++++I QY +L   + I L+F E  ++ + D 
Sbjct: 295 PEIIGRLPILTYLEPLDRSALRRILTEPKNSIIKQYTKLFAMDDIELNFDESVLEYIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L+++ E ++ D  +      EK + I   Y +  I
Sbjct: 355 AIEFK-----LGARGLRSITETIMMDEMYEMPSKNEKKLTILLPYAQSKI 399



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ +AK+ +++A+ N ++R  + A   D  E+   NI++VG TG GK
Sbjct: 63  PTEIKEYLDQYVIGQNEAKKYLSVAVYNHYKRL-MQAKTSDDVEIEKSNIIMVGYTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ +A+    PF  V+ T  TE GYVG ++E I+  L+ VA   V+ + R
Sbjct: 122 TLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVKAAER 174


>gi|283479305|emb|CAY75221.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           pyrifoliae DSM 12163]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKXKSEKATEGELLAQVEPEXLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|323466767|gb|ADX70454.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus
           H10]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  +LD+Y+I Q  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GKT
Sbjct: 64  PMEIKKQLDQYVISQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                  H++  ADL     
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +GI L FT+ ++ A+AD
Sbjct: 295 IPEFIGRIPIITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGIDLKFTDGALKAIAD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+  N     +GAR L+T++E  + DI +
Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379


>gi|325680665|ref|ZP_08160203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
 gi|324107445|gb|EGC01723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 2/111 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66
           P EI + LD Y++GQ +AK A+++A+ N ++R   L  D  D E+   N+LL+GPTG GK
Sbjct: 76  PAEIKAVLDEYVVGQDEAKIALSVAVYNHYKRILTLDDDFDDVEIQKSNVLLLGPTGTGK 135

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LARL   PF   + T  TE GYVG +VE ++  L+  A   V E+
Sbjct: 136 TLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEA 186



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 56/229 (24%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG--------- 289
           ++GI+++DE DKI  +     I   VS EGVQ+ LL +VEG  S+V  + G         
Sbjct: 187 SHGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFI 246

Query: 290 SINTDHILFIASGAF-----------------------------HVSR---PADLL---- 313
            I+T +ILFI  GAF                             +V +   P DL+    
Sbjct: 247 QIDTKNILFICGGAFDGLEAVIKKRTDSSSMGFGGTVKNKSSDFNVLKKVVPHDLVKFGI 306

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++S    ILT+ +++LI QY +L + + I  + T D++  +A 
Sbjct: 307 VPELVGRLPVITVLDELDESALCKILTEPKNSLIKQYTKLFRLDDIDFEVTPDALTEIAK 366

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420
           V +   +     GAR L++V+ER+L  + F A SD   K + I AE VR
Sbjct: 367 VTIEQKT-----GARGLRSVVERILTKLMFDAPSDSTIKGIKITAECVR 410


>gi|305665190|ref|YP_003861477.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
 gi|88709942|gb|EAR02174.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
          Length = 411

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAF-----------------HVSRPAD---------------------LL 313
           NT++ILF+A GAF                 + +  AD                     L+
Sbjct: 235 NTENILFVAGGAFDGIERAITKRLNMQAVGYSASKADESLDEDNILQYIIPKDLKEFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+    R ILT+ ++ +I QY++L   +GI    T+ ++D +   
Sbjct: 295 PEIIGRLPVLTHMNPLDAKTLRAILTEPKNAIIKQYEKLFAMDGISFTITDQALDYIVKK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +  D  F      E    +   Y
Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFEMPSTGETEFKVSKPY 394



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD +IIGQ+  K+ +++A+ N ++R   P    D  E+   NI++VG TG GK
Sbjct: 62  PLEIKEFLDTFIIGQERTKKVMSVAVYNHYKRLLQPHSKEDDVEIQKSNIIMVGQTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165


>gi|298372621|ref|ZP_06982611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275525|gb|EFI17076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 404

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 55/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V             K   +
Sbjct: 172 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVLVPPQGGRKHPEQKMVEV 231

Query: 292 NTDHILFIASGAFH------VSR--------------------------PADL-----LP 314
           NT +ILFI  GAF        SR                          P DL     +P
Sbjct: 232 NTKNILFICGGAFDGIEKRIASRLNTNVVGFRDKTSVTIDKSNIMQYISPQDLKAFGLIP 291

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR P+  +L+ L+++  + IL + ++++I QY++L   + + L F E+ ID + D A
Sbjct: 292 EIIGRLPILTYLEPLDRNALKRILVEPKNSIIKQYQKLFGMDNVELSFDEEVIDYVVDKA 351

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +        +GAR L++++E ++ D+ F      +  + I  EY +
Sbjct: 352 IEYK-----LGARGLRSIVETIMIDVMFDIPSEHKDKLRIQLEYAK 392



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           PREI + LD+Y+IGQ +AK+ +++A+ N ++R  QL  D   E+   NI++VG TG GKT
Sbjct: 60  PREIKAFLDQYVIGQDEAKKFLSVAVYNHYKRISQLTDDNDVEIEKSNIIMVGATGTGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+    PF  V+ T  TE GYVG ++E I+  L+  A
Sbjct: 120 LLARTIAQKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAA 162


>gi|259909251|ref|YP_002649607.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae
           Ep1/96]
 gi|224964873|emb|CAX56395.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia
           pyrifoliae Ep1/96]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKSKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|320530214|ref|ZP_08031284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
 gi|320137647|gb|EFW29559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ +AK+++++A+ N ++R        D  EL   NIL++GPTG GK
Sbjct: 64  PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DL+    
Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL+++    ILT+ ++ L+ Q++ L+  +G+ L F +D++  +A 
Sbjct: 297 IPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQDALHLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            A+   +     GAR L+ ++E ++ ++ +    +Q  T  
Sbjct: 357 EALTHKT-----GARGLRAIIEGIMRNVMYEVPSIQGVTAC 392


>gi|171743307|ref|ZP_02919114.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC
           27678]
 gi|171278921|gb|EDT46582.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC
           27678]
          Length = 438

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 142/325 (43%), Gaps = 91/325 (28%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           SD   D++VA      SN  + G   VG   L++  +KVM                P ++
Sbjct: 117 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 157

Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268
            D +          D++TV +  IQ  +        GIV++DE DKI AR SG    ++R
Sbjct: 158 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 216

Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304
               EGVQ+ LL ++EG+  S                I+T  ILFI  GAF         
Sbjct: 217 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 276

Query: 305 ---------------H-------VSRPA-------DLLPEIQGRFPVRVHLKSLNKSDFR 335
                          H       ++R +        LLPE  GR PV   L+ L + D  
Sbjct: 277 RLGARESGFGAAWHDHEVPKRELLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 336

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT  E+ L+ QY++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+
Sbjct: 337 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 391

Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419
            LED  F    L + + V++DA  V
Sbjct: 392 TLEDTMFQLPSLDDVSEVIVDAASV 416



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50
           P +I + LD Y++GQ+ AKR +++A+ N ++R  +     A+L D              +
Sbjct: 65  PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 124

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 125 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 184


>gi|330446592|ref|ZP_08310244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490783|dbj|GAA04741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTNSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQADSLSNLFEKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 361 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|227824396|ref|ZP_03989228.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
 gi|226904895|gb|EEH90813.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
          Length = 425

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+T    P+EI   LD Y+IGQ DAK A+++A+ N ++R     D     EL   NIL++
Sbjct: 60  KITDLPKPKEIKKILDEYVIGQDDAKVALSVAVYNHYKRINYEQDHHSDVELQKSNILML 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 GPTGSGKTLLAQTLAKILQVPFAIADATSLTEAGYVGEDVENILLRLIQNA 170



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 180 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQELIQI 239

Query: 292 NTDHILFIASGAF----------------------------HVSRP-----------ADL 312
           +T +ILFI  GAF                             ++ P             L
Sbjct: 240 DTTNILFICGGAFAGLENVINARTGKKSMGFGAEIETQKEKEMANPFKKVLPEDFVKYGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L+++    ILT+ ++ L  QY+  +  + + LDF +D++ A+A 
Sbjct: 300 IPEFVGRLPVVVTLDQLDEAALVKILTEPKNALTKQYESFLAMDHVELDFDDDALKAIAH 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
            A+   +     GAR L+ ++E +++++ +   + D  EK +V
Sbjct: 360 EALARKA-----GARGLRAIIEGIMKNVMYEVPSRDDVEKCIV 397


>gi|72162591|ref|YP_290248.1| ATP-dependent protease ATP-binding subunit ClpX [Thermobifida fusca
           YX]
 gi|71916323|gb|AAZ56225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobifida
           fusca YX]
          Length = 447

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRD---ELMPKNILLVGPTGV 64
           PREI   LD Y++GQ+ AK+A+++A+ N ++R +   D  RD   E+   NILL+GPTG 
Sbjct: 87  PREIYEFLDSYVVGQEQAKKALSVAVYNHYKRIRSGGDRSRDDDVEIAKSNILLLGPTGS 146

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 147 GKTLLAQTLAKILKVPFAIADATALTEAGYVGEDVENILLKLIQAA 192



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 60/237 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 202 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 261

Query: 292 NTDHILFIASGAFH-------------------VSR---------------PADLL---- 313
           +T ++LFI  GAF                    V R               P DLL    
Sbjct: 262 DTTNVLFICGGAFSGLEKIIEARTGRQGMGFNAVVRSKKELENSDPFRDVMPEDLLKFGM 321

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+++    ILT+  + L+ QY+ L + + + L FT+D+++A+AD
Sbjct: 322 IPEFVGRLPVITSVHNLDRNALIRILTEPRNALVKQYQRLFELDNVELQFTQDALEAIAD 381

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428
            A+   +     GAR L+ ++E VL  + +     ++   V+I  E V  H+  +P+
Sbjct: 382 QAIMRGT-----GARGLRAIIEEVLLSVMYEVPSRKDVARVIITREAVLEHV--YPT 431


>gi|303239033|ref|ZP_07325563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio
           cellulolyticus CD2]
 gi|302593371|gb|EFL63089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio
           cellulolyticus CD2]
          Length = 431

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD+Y+IGQ+ AK+++++A+ N ++R  +  D++    EL   NI+++GPTG G
Sbjct: 64  PAEIKEILDQYVIGQESAKKSLSVAVYNHYKR--INTDIKGSDVELQKSNIIMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   H+  P DLL   
Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSMGFGAKIESQKTIDMGEILKHI-YPQDLLKFG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L+SL+K+    ILT+ ++ L+ QY++L + + + L+F   +++A+A
Sbjct: 295 LIPEFVGRLPVMVSLQSLDKAALIQILTEPKNALVKQYQKLFEMDEVELEFETGALEAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++  N+     GAR L+ ++E ++ ++ +
Sbjct: 355 EKSIERNT-----GARGLRAIIEEIMLEVMY 380


>gi|118602250|ref|YP_903465.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567189|gb|ABL01994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 72/106 (67%), Gaps = 5/106 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGP 61
           +N++P+++ + L+ Y+IGQ  AK+ +++A+ N ++R  L +D    + EL   NIL+VGP
Sbjct: 58  WNYTPKQLNNFLNDYVIGQDHAKKVLSVAVYNHYKR--LRSDYISNKVELDKSNILMVGP 115

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE +I++L+
Sbjct: 116 TGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNLL 161



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  R     I   VS EGVQ+ +L L+EG+  SV  + G          +
Sbjct: 174 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTVASVPPQGGRKHPNQETIDV 233

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                     + +P DL+  
Sbjct: 234 DTSKILFICGGAFDGLDKIINRRVEKVTGIGFAADVKDQKEKKTLSDLFALIQPEDLIKF 293

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV+  L  L+++    IL + ++++I Q++E+   EG+ L F   S+ A+
Sbjct: 294 GLIPEFVGRLPVQTALSELDETALVKILIEPKNSVIKQFQEIFFMEGVKLIFRNPSLLAI 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A +A+        IGAR L++++E +L D  F    L + T VI
Sbjct: 354 ARLAIKRK-----IGARGLRSILEDLLLDTMFELPSLLDVTEVI 392


>gi|116515218|ref|YP_802847.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257072|gb|ABJ90754.1| specificity component of Clp ATP-dependent serine protease,
           chaperone [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 420

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGV 64
           ++P+ I   LD++IIGQ+ AK+ +++A+ N +++    L  +   EL   NIL++GPTG 
Sbjct: 61  YTPKIIKEYLDKFIIGQKKAKKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           GKT I+  LA+    PF   + T  TE GYVG +VE I+R L++
Sbjct: 121 GKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIE 164



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            +   I
Sbjct: 176 GIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKI 235

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           NT  ILFI  G+F                                       +P DL+  
Sbjct: 236 NTSKILFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKF 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE   R P+ V LKSL KSD   IL   ++ LI QYK+L   E + L F   ++  +
Sbjct: 296 GLIPEFISRLPIIVTLKSLKKSDLIKILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL +  +     +  K++ ID+  ++
Sbjct: 356 AKYAIKKKT-----GARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVIK 401


>gi|297571130|ref|YP_003696904.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931477|gb|ADH92285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 422

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 12/121 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58
           P EI   L++Y++GQ+ AKR +A+A+ N ++R          +Q P D+  E+   NILL
Sbjct: 65  PAEIFEFLNQYVVGQERAKRTLAVAVYNHYKRIRSQQGSSLAKQSPNDV--EIGKSNILL 122

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A + V  ++
Sbjct: 123 MGPTGTGKTYLAQSLAKMLDVPFAIADATALTEAGYVGEDVENILLKLIQAAGDDVERAQ 182

Query: 119 R 119
           R
Sbjct: 183 R 183



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 60/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 184 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIDI 243

Query: 292 NTDHILFIASGAF--------------------------HVSR------PADL-----LP 314
           +T ++LFI +GAF                          H +       P DL     +P
Sbjct: 244 DTSNVLFIVAGAFAGMEDIVSSRTGRRGIGFGAKLHEADHGAEVFREVTPEDLHKFGIIP 303

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+  +++ L   D   ILT  ++ L+ QY+++   +G+ILD T  ++ A+A+ A
Sbjct: 304 ELIGRLPIITNVEELTVDDLVQILTTPKNALLKQYQKMFALDGVILDMTPAALRAIAEEA 363

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME +L ++ F   S  D++   VVID + V
Sbjct: 364 IARGT-----GARGLRSIMENLLRELMFDIPSRDDVER--VVIDEDVV 404


>gi|159030461|emb|CAO91363.1| clpX [Microcystis aeruginosa PCC 7806]
          Length = 444

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 11/121 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDELMPKNILL 58
           PREI   LD Y+IGQ +AK+ +++A+ N ++R +           P D   EL   NILL
Sbjct: 79  PREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPED-SIELQKSNILL 137

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197

Query: 119 R 119
           R
Sbjct: 198 R 198



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 199 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 258

Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311
           +T +ILFI  GAF                   +P D                        
Sbjct: 259 DTSNILFICGGAFVGLDKVIDQRLGKKSMGFIQPGDSQASKDKVAAGLLKQMTPDDLVKF 318

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR PV   L  L++     ILT   + L+ QY++L+K + + L+F  D++ A+
Sbjct: 319 GMIPEFVGRIPVLAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAI 378

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 379 AQEAYRRKT-----GARALRGIVEELMLDVMY 405


>gi|62260894|gb|AAX77944.1| unknown protein [synthetic construct]
          Length = 452

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 85  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 144

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 145 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 188



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 198 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 257

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   +D                          
Sbjct: 258 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIESEDLTRFG 317

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 318 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 377

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 378 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 418


>gi|325970909|ref|YP_004247100.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta
           sp. Buddy]
 gi|324026147|gb|ADY12906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta
           sp. Buddy]
          Length = 409

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P+E+   +D Y+IGQ DAKR +A+A+ N ++R   Q+  A+   EL   NIL+VGPTG 
Sbjct: 60  TPKELKDYMDEYVIGQDDAKRVLAVAVYNHYKRVKFQKQIAEQGVELDKSNILMVGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++  LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 GKTLLASTLAKKLQVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 59/237 (24%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG-- 289
           D+I+  E YGI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G  
Sbjct: 167 DNIKAAE-YGIIFIDEIDKIAKKGENPSITRDVSGEGVQQALLKIIEGTDASVPPQGGRK 225

Query: 290 -------SINTDHILFIASGAF---------HVSRPA----------------------- 310
                   INT +ILFI  GAF          VS  A                       
Sbjct: 226 HPNQEMLKINTRNILFICGGAFVGLDKVIEKRVSSHAMGFGASIINAQDKDLHALYSKMM 285

Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P+ V L +L+K D   I+ + +++++ QY+   + +GI   F 
Sbjct: 286 PDDLIKFGLIPEFIGRLPIHVALDNLSKKDLMRIIVEPKNSILRQYEAAFRLDGIEFIFK 345

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++++A+A+ A    +     GAR L++++E ++  I +    +Q+ K V++  E V
Sbjct: 346 SEAVEAVAEKAFEQKT-----GARGLRSIVENIMMGIMYDIPSIQQVKQVIVGRECV 397


>gi|188534633|ref|YP_001908430.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
 gi|188029675|emb|CAO97554.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Erwinia tasmaniensis Et1/99]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L +  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEAALLNTMYDLPSVDDVEKVVID 399


>gi|188534631|ref|YP_001908428.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
 gi|188029673|emb|CAO97552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L +  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEAALLNTMYDLPSVDDVEKVVID 399


>gi|331092463|ref|ZP_08341287.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401203|gb|EGG80795.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 467

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD YI+GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 115 APHKIKASLDEYIVGQEHAKKAMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGCGKT 174

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ  
Sbjct: 175 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGI 228

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158
           I  +E  +D  + K   +N R+V  + ++ G
Sbjct: 229 IFIDE--IDK-IAKKKNTNQRDVSGESVQQG 256



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 227 GIIFIDEIDKIAKKKNTNQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 286

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                V   ADL                        +P
Sbjct: 287 KNILFICGGAFPDLEEIIKERLNKQASVGFMADLKDKYNNDKNLLEKVEVEDLRNFGMIP 346

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L++     IL + ++ ++ QY++L+  + + L+F E+++ A+A+ A
Sbjct: 347 EFIGRLPVIFTLQGLDRDKLVKILKEPKNAILKQYQKLLALDEVKLEFDEEALGAIAEKA 406

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +       D GAR L+ ++E  + DI +
Sbjct: 407 MK-----KDTGARALRAIIEEFMLDIMY 429


>gi|226311382|ref|YP_002771276.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus
           brevis NBRC 100599]
 gi|254763836|sp|C0ZAG3|CLPX_BREBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226094330|dbj|BAH42772.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+++++A+ N ++R    A + D EL   NI+L+GPTG GKT
Sbjct: 64  PVEIRKILDDYVIGQDMAKKSLSVAVYNHYKRINSGAKIEDVELQKSNIMLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T +ILFI  GAF      + R                               P DLL  
Sbjct: 236 DTSNILFICGGAFDGVEQIIKRRLGKKVIGFGADFGDGVKGDLKAGEYLKYILPEDLLKF 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+ L++     ILT+ +++L+ QY++L+  +G+ L+F   ++  +
Sbjct: 296 GLIPEFVGRLPVLATLEPLDEETLVRILTEPKNSLVKQYQKLLSLDGVELEFDNGALLQI 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+  N+     GAR L+ ++E+++ D+ +     ++    VI  E VR
Sbjct: 356 AKEAIKRNT-----GARGLRAIIEQIMLDMMYELPSREDVNKCVITEETVR 401


>gi|224532429|ref|ZP_03673056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi WI91-23]
 gi|224512639|gb|EEF83013.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi WI91-23]
          Length = 430

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  N+     GAR L++++E + +D+ F    + + K VV+  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|262380155|ref|ZP_06073310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SH164]
 gi|262298349|gb|EEY86263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SH164]
          Length = 438

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +        E+   NILL+GPTG
Sbjct: 63  PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGHKTEDKVEIAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T ++LFI  GAF                                       PADL    
Sbjct: 239 DTSNVLFICGGAFSGLEKIVQHRQEKGGIGFTAEVKSKDETKKLAELFRQVEPADLVKFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++  +A
Sbjct: 299 LIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRTVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L++++E VL
Sbjct: 359 KKALERNT-----GARGLRSILENVL 379


>gi|257068143|ref|YP_003154398.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
 gi|256558961|gb|ACU84808.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
          Length = 444

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 22/125 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPA-------------- 45
           +PREI   L+ Y++GQ+ AKRA+A+A+ N ++R           PA              
Sbjct: 65  APREIFDFLEEYVVGQEPAKRALAVAVYNHYKRVRAQESEQSATPAKSAAASLAEEVDSE 124

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           D R E+   N++LVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  
Sbjct: 125 DDRIEVAKSNVMLVGPTGCGKTYLAQTLARMLDVPFTMADATALTEAGYVGEDVENILLK 184

Query: 106 LVDVA 110
           L+  A
Sbjct: 185 LLQAA 189



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 55/210 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 197 EHGIIYIDEIDKIGRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFI 256

Query: 290 SINTDHILFIASGAF----------------------HVSR----------PADLL---- 313
            I+T ++LFI +GAF                      H             P DLL    
Sbjct: 257 QIDTTNVLFIVAGAFAGIEDIIAQRIGKRGIGFGSELHSPLEQEQLYGKLLPEDLLKFGL 316

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+++    ILT+  + L+ Q++++   +G+ LDF   +++A+AD
Sbjct: 317 IPEFIGRLPVISSVSNLDRAALISILTEPRNALVKQFQKMFALDGVELDFERSALEAIAD 376

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E  L+ + F
Sbjct: 377 KAIERET-----GARGLRAILEESLQPVMF 401


>gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum
           rubarum]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
             P EI   LD+Y++GQ+ AKR +++A+ N ++R    Q+  D+  EL   NIL++GPTG
Sbjct: 65  LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDV--ELQKGNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++ R
Sbjct: 123 TGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAER 178



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 58/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQV 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                      RP DLL   
Sbjct: 239 DTSNILFICGGAFIGLDNIISQRLSSKNLGFGAEIRTPEDRKRTGELLANVRPDDLLKYG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GRFPV   L  L+++ F  ILT+ ++ L+ Q+++L   E + L  TE ++ A+A
Sbjct: 299 LIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             A      +   GAR L+ ++E V+ D+ +    +Q
Sbjct: 359 HKAF-----IQKTGARGLRAILEEVMLDLMYEIPSVQ 390


>gi|308276961|gb|ADO26860.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis I19]
          Length = 406

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R           +   D   EL   NIL+
Sbjct: 45  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 104

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 105 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 164

Query: 119 R 119
           R
Sbjct: 165 R 165



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 166 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 225

Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312
           +T +ILFI +GAF                       S+             P DL     
Sbjct: 226 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 285

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD
Sbjct: 286 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 345

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A+   +     GAR L+ +ME +L  + +   D ++  VV
Sbjct: 346 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVV 381


>gi|226953944|ref|ZP_03824408.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
 gi|226835298|gb|EEH67681.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
          Length = 436

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R    Q        E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 106/393 (26%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151
           I  + VDV +++V+ S++ E  + AS  +     I  AL    +G+     T  V     
Sbjct: 32  ICNECVDVCMDLVQTSQQVEAGDWASKPLPKPHEIRAALDQYVIGQDIAKKTLSVAVYNH 91

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K+L+ G+      +IE+A      SN  + G    G   L++  ++++           
Sbjct: 92  YKRLKAGQSGHTHKEIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258
                P  M D +  L +   V  D   +V+               GI+++DE DKI  +
Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305
                I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF 
Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFS 251

Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325
                         +   AD                          L+PE  GR PV   
Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L++     ILT+ ++ L  QY+ L   E + L F E ++ A+A  A+  N+     G
Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNT-----G 366

Query: 386 ARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           AR L++++E VL +  +   S SD+   TV++D
Sbjct: 367 ARGLRSILENVLLETMYDLPSRSDV--GTVIVD 397


>gi|90579277|ref|ZP_01235087.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
 gi|90440110|gb|EAS65291.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQTDTLSDLFEKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 361 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|189463686|ref|ZP_03012471.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM
           17393]
 gi|189438636|gb|EDV07621.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM
           17393]
          Length = 399

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 164 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 223

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 224 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTAVIDKSNMMQYIAPQDLKSFGLI 283

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + L F ++  + + D 
Sbjct: 284 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDKVELKFEDEVFEYIVDK 343

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F      + T V+  +Y +
Sbjct: 344 AVEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDTFVVTLDYAK 385



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 52  PLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 110

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 111 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 163


>gi|218295536|ref|ZP_03496349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           aquaticus Y51MC23]
 gi|218244168|gb|EED10694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           aquaticus Y51MC23]
          Length = 396

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 52/221 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 166 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIP 224

Query: 291 INTDHILFIASGAFH----------------VSRPA----------------DLLPEIQG 318
           +NT +ILFI  GAF                  +RP                  L+PE  G
Sbjct: 225 VNTKNILFILGGAFEGLENIVKARTERTTIGFTRPRAKEEPMEVIPEDLVKFGLIPEFVG 284

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P+ V L  L + D   ILT+ ++ L+ QY+ L++ EGI L FT+ ++  +A  A+   
Sbjct: 285 RAPLIVQLHPLGEEDLVRILTEPKNALVKQYQALLRMEGIELRFTQAALREIARRALKRG 344

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +     GAR L+ ++E+ + D+ F A     + +VID  ++
Sbjct: 345 T-----GARGLRAILEKTMVDLMFEAPGSGVREIVIDLPHL 380



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI + LD Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT
Sbjct: 57  KPQEIKAHLDGYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKSNILLIGPTGTGKT 113

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++  LAR    PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 114 LLAETLARFLEVPFAIADATTLTEAGYVGEDVENVILRLLQNA 156


>gi|149911804|ref|ZP_01900407.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36]
 gi|149805104|gb|EDM65127.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36]
          Length = 424

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P +I  +LD Y+IGQ  AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHQIRGKLDDYVIGQDHAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 120 PTGSGKTLLAETLARILDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 239 DTSKILFICGGAFSGLDKVIEMRTNTNSGIGFTAEVKGEAEKATLSEVFAKVEPQDLVKF 298

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++S    ILT+ ++ L  QY  L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVTATLTELDESALIQILTEPKNALTKQYSALFDLEGVDLEFREEALTAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++ N+     GAR L++++E +L D  +
Sbjct: 359 AKKAMSRNT-----GARGLRSIVEAILLDTMY 385


>gi|42562485|ref|NP_564423.3| ATP-dependent Clp protease ATP-binding subunit ClpX, putative
           [Arabidopsis thaliana]
 gi|51536496|gb|AAU05486.1| At1g33360 [Arabidopsis thaliana]
 gi|53850505|gb|AAU95429.1| At1g33360 [Arabidopsis thaliana]
 gi|332193466|gb|AEE31587.1| ATP-dependent Clp protease [Arabidopsis thaliana]
          Length = 656

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKN 55
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R            Q +  D   EL   N
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 310

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVA 365



 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287
           TV   ++Q  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ V+    
Sbjct: 363 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 421

Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311
                    +  I+T  ILFI  GAF       V R  D                     
Sbjct: 422 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 481

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L
Sbjct: 482 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 541

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FTE +++ ++  A+     V + GAR L+ ++E +L +  F   D ++   
Sbjct: 542 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 596

Query: 413 VIDA 416
            IDA
Sbjct: 597 RIDA 600


>gi|329116132|ref|ZP_08244849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parauberis NCFD 2020]
 gi|326906537|gb|EGE53451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parauberis NCFD 2020]
          Length = 409

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R     + RDE    L   NI+++GPTG 
Sbjct: 64  PKELLEALNQYVVGQDRAKRALAVAVYNHYKRISYK-ESRDEEEVELQKSNIMMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+  D   ILT+ ++ L+ QY+ L+  +G+ L+F +++++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLSIGDLIQILTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           ++ N+     GAR L++++E  + DI F     ++ T VI
Sbjct: 358 IDRNT-----GARGLRSIIEETMLDIMFDIPSQEDITKVI 392


>gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD-------ELMPKNI 56
           PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q         L D       E+   NI
Sbjct: 64  PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLADGGHHDDVEIAKSNI 123

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 55/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246

Query: 292 NTDHILFIASGAF-----------------------HVSR---------PADLL-----P 314
           +T ++LFI +GAF                         S+         P DLL     P
Sbjct: 247 DTTNVLFIVAGAFAGLEEIIGSRSGRKGIGFGAPLNEASKKVDSYGEVMPEDLLKFGLIP 306

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   + +L++     IL+  ++ L+ QY+++ + +G+ L F E +++A+AD A
Sbjct: 307 EFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQIDGVELVFDETALNAIADQA 366

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +   +     GAR L+ +ME VL  + F     ++   V+  E V L
Sbjct: 367 LERGT-----GARGLRAIMEEVLLPVMFDLPSREDVASVVITEDVVL 408


>gi|255532967|ref|YP_003093339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter
           heparinus DSM 2366]
 gi|255345951|gb|ACU05277.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter
           heparinus DSM 2366]
          Length = 413

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
             P EI + +D+Y+IGQ DAK+ +A+A+ N ++R     D  DE  +   NI+LVG TG 
Sbjct: 62  LKPLEIKAHIDQYVIGQDDAKKVLAVAVYNHYKRLSQKVDKGDEVEIEKSNIMLVGETGT 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAA 167



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 61/237 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GIV++DE DK VAR S N      VS EGVQ+ LL ++EG+ V+            K   
Sbjct: 177 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIP 235

Query: 291 INTDHILFIASGAFH-VSR--------------------------------PADL----- 312
           +NT++ILFI  GAF  + R                                P DL     
Sbjct: 236 VNTNNILFICGGAFDGIERKIANRLRTQAVGYKVKKDDAELDLKNLYKYITPQDLKSFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  HL  L+K   R ILT+ +++L  QY +L + E + L F  + +D + D
Sbjct: 296 IPELIGRVPVLTHLNPLDKQALRNILTEPKNSLFRQYVKLFELENVKLTFDNEVLDFIVD 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDF 426
            A+        +GAR L+++ E ++ D  F   S + ++E ++ +D    +    DF
Sbjct: 356 KAMEYK-----LGARGLRSICEAIMLDAMFEIPSDTSVKELSITLDYAVEKFEKADF 407


>gi|212532331|ref|XP_002146322.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC
           18224]
 gi|210071686|gb|EEA25775.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC
           18224]
          Length = 633

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 65/404 (16%)

Query: 43  LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            P     +L   NILL+GP+GVGKT +++ LAR+   PF   + T FT+ GY+G + +  
Sbjct: 183 FPDTSSTQLEKSNILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTPFTQAGYIGEDADVC 242

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
           +  L+  A   V ++ R  +     ++  ++I  A V      +   V +  L+  E + 
Sbjct: 243 VHRLLAAANYDVEKAERGII----CLDEVDKIATARVSHGKDVSGEGVQQALLKIVEGTT 298

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            ++ ++    +S  +    PG    G    S   S    SG             P   + 
Sbjct: 299 VQVQVKPEKNTSRPAG-GAPGSFPPGATPGSAFNSPSTASG-------------PPPQKG 344

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGV------------SR 268
           E      +  V  D+I  + +   V L++   D+I     G G  V            S 
Sbjct: 345 E------IYNVRTDNILFIFSGAFVGLNKIIMDRISKSSMGFGQPVRASSISSGNSSSSH 398

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL--- 312
           +   +  +P++ GS     Y      H+ F  S                 +S P+DL   
Sbjct: 399 DASNQAPIPIIPGSEEEALY----KKHLPFFTSATPPTSSEEPVYFNPLDLSTPSDLQKF 454

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L SL+ S    ILT+  ++L+ QY+ L    GI L FT  ++  +
Sbjct: 455 GFIPELVGRIPVTTALSSLSHSLLLRILTEPRNSLVTQYETLFDLSGIKLSFTTPALHKI 514

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A  A+++ +     GAR L+T +E +L D  F A     K V++
Sbjct: 515 ASNALSMGT-----GARALRTELETILSDAMFEAPGSSVKFVLV 553


>gi|149003196|ref|ZP_01828092.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758656|gb|EDK65653.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 251

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178


>gi|150388890|ref|YP_001318939.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|229889848|sp|A6TM62|CLPX_ALKMQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|149948752|gb|ABR47280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
           metalliredigens QYMF]
          Length = 420

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ+ AK+A+A+A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 63  PKEIKDILNGYVIGQEKAKKALAVAVYNHYKRINTDTKTDDVELQKSNIMMLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                     +P DLL    
Sbjct: 235 DTTNILFICGGAFDGIEKLIQKRTGKTSMGFGADVKSKVVKDIGGLLKQIQPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L+++    ILT+ ++ L+ QYK+L + +G+ ++F  +++  +A+
Sbjct: 295 IPEFVGRLPVIVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEFEGEALKLIAE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E ++ DI +
Sbjct: 355 KAIERKT-----GARGLRGIVEGLMMDIMY 379


>gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way
           CG']
          Length = 426

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
             P EI   LD+Y++GQ+ AKR +++A+ N ++R    Q+  D+  EL   NIL++GPTG
Sbjct: 65  LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDV--ELQKGNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++ R
Sbjct: 123 TGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAER 178



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 58/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQV 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                      RP DLL   
Sbjct: 239 DTSNILFICGGAFIGLDNIISQRLSSKNLGFGAEIRTPEDRKRTGELLANVRPDDLLKYG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GRFPV   L  L+++ F  ILT+ ++ L+ Q+++L   E + L  TE ++ A+A
Sbjct: 299 LIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             A      +   GAR L+ ++E V+ D+ +    +Q
Sbjct: 359 HKAF-----IQKTGARGLRAILEEVMLDLMYEIPSVQ 390


>gi|297851760|ref|XP_002893761.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339603|gb|EFH70020.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 660

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKN 55
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R            Q +  D   EL   N
Sbjct: 255 TPKEICKWLDKFVIGQTRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 314

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 315 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVA 369



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287
           TV   ++Q  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ V+    
Sbjct: 367 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 425

Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311
                    +  I+T  ILFI  GAF       V R  D                     
Sbjct: 426 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 485

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L
Sbjct: 486 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 545

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FTE +++ ++  A+     V + GAR L+ ++E +L +  F   D ++   
Sbjct: 546 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 600

Query: 413 VIDA 416
            IDA
Sbjct: 601 RIDA 604


>gi|187931472|ref|YP_001891456.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712381|gb|ACD30678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVTQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|256787755|ref|ZP_05526186.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289771642|ref|ZP_06531020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289701841|gb|EFD69270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
          Length = 428

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404


>gi|226329067|ref|ZP_03804585.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
 gi|225202253|gb|EEG84607.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKR------LRNGDKANGVELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 156/389 (40%), Gaps = 100/389 (25%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD---- 157
           I  + VD+ ++I+RE    E++E A  +    +            T    RK L D    
Sbjct: 36  ICDECVDLCVDIIRE----EIKELAPHHERSEL-----------PTPHEIRKHLDDYVIG 80

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY- 216
            E++ K + + V +    + N D   G  +G  N+  L     GSG  K +       Y 
Sbjct: 81  QELAKKVLAVAVYNHYKRLRNGDKANGVELGKSNI--LLIGPTGSG--KTLLAETLARYL 136

Query: 217 --PELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVARDSG 261
             P  M D +  L +   V  D   +++               GIV++DE DKI  +   
Sbjct: 137 DVPFTMAD-ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKITRKSEN 195

Query: 262 NGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---- 304
             I   VS EGVQ+ LL LVEG+  S            ++  ++T  ILFI  GAF    
Sbjct: 196 PSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLD 255

Query: 305 ---------HVS-----------------------RPADLL-----PEIQGRFPVRVHLK 327
                    H                          P DL+     PE  GR PV   L 
Sbjct: 256 KVVAQRLNTHSGIGFGAEVKSQKEKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLG 315

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            LN+     IL + ++ L  QY+ L K EG+ L+F ++++ A+A  A+     V   GAR
Sbjct: 316 ELNEEALIQILQEPKNALTKQYQALFKLEGVDLEFRKEALTAIAKKAM-----VRKTGAR 370

Query: 388 RLQTVMERVLEDISFSASDLQE-KTVVID 415
            L++++E  L D  +     +  + VVID
Sbjct: 371 GLRSIVEAALLDTMYDLPSFENAEKVVID 399


>gi|224367557|ref|YP_002601720.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfobacterium
           autotrophicum HRM2]
 gi|259491255|sp|C0QHJ8|CLPX_DESAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|223690273|gb|ACN13556.1| ClpX1 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGP 61
             +PREI   LD Y+I Q  AK+ +++A+ N ++R  L A+++ E    +   NILL+GP
Sbjct: 63  KLTPREIKDVLDTYVIEQDRAKKVLSVAVYNHYKR--LDAEVKSEDDVEIQKSNILLIGP 120

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LAR    PF   + T  TE GYVG +VE II  LV  A   + +++R
Sbjct: 121 TGCGKTLLAQTLARFLDVPFALADATTLTEAGYVGEDVENIILSLVQNADYDIEKAQR 178



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  R     I   VS EGVQ+ LL ++EG++ S             +  +
Sbjct: 179 GIIYIDEVDKISQRGDNPSITRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQDFVKV 238

Query: 292 NTDHILFIASGAF---------HVS-------------------------RPADLL---- 313
            T +ILF+  G F          +S                         +P DL+    
Sbjct: 239 ETSNILFVCGGTFTGLEKVIERRISQKSMGFGAEVQSRKEKNVGELLEQLKPEDLIKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  LN++    ILT+ ++ L+ QY+ L + E + L FTE+++ A+A 
Sbjct: 299 IPEFLGRLPVVTSLSELNEASLVKILTEPKNALLKQYQRLFEFENVKLTFTEEALAAMAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   S     GAR L+ +ME  + DI +
Sbjct: 359 EAVTRRS-----GARGLRAIMEETMLDIMY 383


>gi|166369014|ref|YP_001661287.1| ATP-dependent protease ATP-binding subunit ClpX [Microcystis
           aeruginosa NIES-843]
 gi|189044139|sp|B0JL96|CLPX_MICAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166091387|dbj|BAG06095.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
           NIES-843]
          Length = 444

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 11/121 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDELMPKNILL 58
           PREI   LD Y+IGQ +AK+ +++A+ N ++R +           P D   EL   NILL
Sbjct: 79  PREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPED-SIELQKSNILL 137

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197

Query: 119 R 119
           R
Sbjct: 198 R 198



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 199 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 258

Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311
           +T +ILFI  GAF                   +P D                        
Sbjct: 259 DTSNILFICGGAFVGLDKVIDQRLGKKSMGFIQPGDGQASKDKVAAGLLKQMTPDDLVKF 318

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR P+   L  L++     ILT   + L+ QY++L+K + + L+F  D++ A+
Sbjct: 319 GMIPEFVGRIPILAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAI 378

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 379 AQEAYRRKT-----GARALRGIVEELMLDVMY 405


>gi|125975223|ref|YP_001039133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           thermocellum ATCC 27405]
 gi|256003115|ref|ZP_05428107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 2360]
 gi|281419197|ref|ZP_06250213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum JW20]
 gi|166214772|sp|A3DJ11|CLPX_CLOTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125715448|gb|ABN53940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           thermocellum ATCC 27405]
 gi|255992806|gb|EEU02896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 2360]
 gi|281407063|gb|EFB37325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum JW20]
 gi|316939387|gb|ADU73421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 1313]
          Length = 431

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD+Y++GQ  AK+A+A+A+ N ++R  + +D++    EL   NI+++GPTG G
Sbjct: 64  PSEIKEILDQYVVGQDTAKKALAVAVYNHYKR--INSDVKGSDVELQKSNIVMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313
           +T +ILFI  GAF                            +V        P DLL    
Sbjct: 236 DTTNILFICGGAFDGIEKIIQNRIGKKSMGFGAKIESPKKANVGEILKNILPQDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL++     ILT+ ++ L+ QY++L + + +IL+F +++I+A+AD
Sbjct: 296 IPEFVGRLPVIVTLHSLDREALVKILTEPKNALVKQYQKLFEMDDVILEFEKEAIEAIAD 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E ++ D+ +
Sbjct: 356 KAIERNT-----GARGLRAILEEIMLDVMY 380


>gi|332519947|ref|ZP_08396411.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044506|gb|EGI80700.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix
           algicola 5H-3-7-4]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT++ILFIA GAF      +S+                            P DL     +
Sbjct: 234 NTENILFIAGGAFDGIERVISKRLNMQALGYSAAMSEDTVDKNNILQYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+ +  R ILT+ ++ +I QYK+L   + I L  T+ +++ +   
Sbjct: 294 PEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFSMDEIELSITDGALEYIVGK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           A+        +GAR L+++ E +L D  F       K + +   Y
Sbjct: 354 AIEYK-----LGARGLRSLCEEILTDAMFELPGSDTKKLSVTKAY 393



 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P++I + LD YIIGQ+  K+ +++A+ N ++R  Q P +   E+   NI++VG TG GKT
Sbjct: 62  PQQIKAFLDEYIIGQEHTKKVMSVAVYNHYKRLLQQPTNDDIEIQKSNIIMVGETGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ ++++   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LMAKTISKMLNVPLSIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|294651551|ref|ZP_06728860.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822574|gb|EFF81468.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 436

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R    Q        E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 106/393 (26%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151
           I  + VDV +++V+ S++ E  + AS  +     I  AL    +G+     T  V     
Sbjct: 32  ICNECVDVCMDLVQTSQQVEAGDWASKPLPKPHEIRAALDQYVIGQDIAKKTLSVAVYNH 91

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K+L+ G+      +IE+A      SN  + G    G   L++  ++++           
Sbjct: 92  YKRLKAGQSGHTHKEIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258
                P  M D +  L +   V  D   +V+               GI+++DE DKI  +
Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305
                I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF 
Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFS 251

Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325
                         +   AD                          L+PE  GR PV   
Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L++     ILT+ ++ L  QY+ L   E + L F E ++ A+A  A+  N+     G
Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNT-----G 366

Query: 386 ARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           AR L++++E VL +  +   S SD+   TV++D
Sbjct: 367 ARGLRSILENVLLETMYDLPSRSDV--GTVIVD 397


>gi|283479303|emb|CAY75219.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           pyrifoliae DSM 12163]
          Length = 292

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 239 DTSKILFICGGAF 251


>gi|220912905|ref|YP_002488214.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
 gi|254763831|sp|B8HA33|CLPX_ARTCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219859783|gb|ACL40125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
          Length = 426

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD-------ELMPKNI 56
           PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q        +L D       E+   NI
Sbjct: 64  PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGNLGDGGHHDDVEIAKSNI 123

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 55/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246

Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314
           +T ++LFI +GAF                         S+ AD              L+P
Sbjct: 247 DTTNVLFIVAGAFAGLEEIIGSRSGRKGIGFGAPLNEASKKADSYGEVMPEDLLKFGLIP 306

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   + +L++     IL+  ++ L+ QY+++ + +G+ L F + ++DA+AD A
Sbjct: 307 EFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQIDGVELVFDDGALDAIADQA 366

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +   +     GAR L+ ++E VL  + F     ++   V+  E V L
Sbjct: 367 LERGT-----GARGLRAILEEVLLPVMFDLPSREDVASVVITEDVVL 408


>gi|83765746|dbj|BAE55889.1| unnamed protein product [Aspergillus oryzae]
          Length = 609

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 191/489 (39%), Gaps = 120/489 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                         
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145

Query: 43  ----------LPAD---------LRD----ELMPKNILLVGPTGVGKTAISRRLARLAGA 79
                      P D         L D    +L   NILL+GP+GVGKT +++ LA++   
Sbjct: 146 PVEGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAKVLSV 205

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAE--- 131
           PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+       
Sbjct: 206 PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGK 265

Query: 132 ----ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               E +  AL+ K     T +V  K+ ++   +    +     ++S + N   P     
Sbjct: 266 DVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPPSNGG 322

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G+    E+++      R   I       +  L +      + MD + R SI         
Sbjct: 323 GMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVMDRISRGSIG-------- 363

Query: 248 FLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVSTKYGSINTDHILFIASG- 302
               F + V   S +     R G         +P+V GS     Y      H+ F  S  
Sbjct: 364 ----FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEALY----KKHLPFFTSAS 412

Query: 303 ------------AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                       A  +  P DL     +PE+ GR PV   L +L +     ILT+  ++L
Sbjct: 413 PESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSL 472

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY  L    GI L FT  ++  +A  A  + +     GAR L+T ME +L D  +   
Sbjct: 473 LAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAMYETP 527

Query: 406 DLQEKTVVI 414
               K V++
Sbjct: 528 GSSVKFVLV 536


>gi|331005197|ref|ZP_08328591.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC1989]
 gi|330420979|gb|EGG95251.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC1989]
          Length = 433

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD--ELMPKNILLVGPT 62
           +P+EI   LD+Y+IGQ  AKR +++A+ N ++R +        +D  EL   NIL+VGPT
Sbjct: 70  TPKEITEILDQYVIGQFRAKRVLSVAVYNHYKRLRFGDTAGKDKDTVELGKSNILMVGPT 129

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           G GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 130 GSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 174



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 187 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 246

Query: 292 NTDHILFIASGAF----HVSR------------------------------------PAD 311
           +T +ILF+  GAF     V R                                       
Sbjct: 247 DTSNILFVCGGAFAGLDKVIRDRSEKGGIGFNAVVKNKEESKGVGEALKELESEDLVAYG 306

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L+ L++     ILT+ +++L  QY +L + EG+ +DF ED++ A+A
Sbjct: 307 LIPEFVGRLPMIATLEELDEQALIQILTEPKNSLTKQYTKLFEMEGVEIDFREDALKAVA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
             A+     V   GAR L+++ME VL D  +   S+   + VV+D
Sbjct: 367 TKAM-----VRKTGARGLRSIMEAVLLDTMYRIPSEENVQKVVVD 406


>gi|310766845|gb|ADP11795.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp.
           Ejp617]
          Length = 424

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+   +     GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAMRRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|251791977|ref|YP_003006697.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533364|gb|ACS96610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter aphrophilus NJ8700]
          Length = 415

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 65  TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTDDVELGKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 165



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          I
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 237

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 238 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTNLFKQVEPDDLMKY 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT+D++ A+
Sbjct: 298 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVKLEFTKDALIAM 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E VL D  +    L+  EK VV
Sbjct: 358 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVV 397


>gi|152967458|ref|YP_001363242.1| ATP-dependent protease ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
 gi|189044138|sp|A6WDT9|CLPX_KINRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151361975|gb|ABS04978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
          Length = 430

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P+EI   LD+Y+IGQ  AK+++A+A+ N ++R Q+            E+   NILL+GPT
Sbjct: 64  PKEIFDFLDQYVIGQSSAKKSLAVAVYNHYKRIQVGEPSTKGREDAVEISKSNILLIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T ++LFI  GAF  + R                                 P DL+    
Sbjct: 241 DTTNVLFIVGGAFAGLDRIIEARSGKQGLGFGAQLRSTTEKKAEPSFADVMPEDLMKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   +++L++     ILT   + L  QY+ + + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPIITSVENLDQEALVQILTKPRNALAKQYQRMFELDGVELEFTDDALEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ ++E VL  + F
Sbjct: 361 QAI-LRGT----GARGLRAIIEEVLLPVMF 385


>gi|225874968|ref|YP_002756427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium capsulatum ATCC 51196]
 gi|225791560|gb|ACO31650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium capsulatum ATCC 51196]
          Length = 426

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+     +  EL   NILLVGPTG GK
Sbjct: 69  PLEVKAFLDEYVIGQEQTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA++   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 129 TLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 66/237 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 241

Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309
           +T +ILFI  GAF                                           ++ P
Sbjct: 242 DTTNILFICGGAFVGLERVVGRRVGKKALGFKAIAEKDQQENGQTTRTQRDTELLRMAEP 301

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   L  L+++    ILT   + ++ QY++L + EG+ L F+E
Sbjct: 302 QDLIRYGLIPEFVGRLPVIGILDELDEAALVEILTKPRNAILKQYQKLFEFEGVNLVFSE 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           ++  A+A  A++       +GAR L+ ++E ++ D+ +   S+ +   +VIDAE V+
Sbjct: 362 EAAHAIALEALDRK-----VGARGLRMILEELMLDLMYHLPSNKRVSDLVIDAEMVK 413


>gi|126659495|ref|ZP_01730628.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110]
 gi|126619229|gb|EAZ89965.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110]
          Length = 391

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI   LD Y+IGQ +AK+ +++A+ N ++R  L     D    EL   NILL+GPTG 
Sbjct: 32  PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLNLVQGKNDDDNIELQKSNILLMGPTGS 91

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 92  GKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 146



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 147 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 206

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R ADL+            
Sbjct: 207 DTSNILFICGGAFVGLERVIEQRIGKKSMGFVRPGEGQSKEKRTADLMQRVEPDDLVKFG 266

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L +     ILT   + L+ QY++L+  + + L+F+E+++ A+A
Sbjct: 267 MIPEFVGRIPVMAALNPLTEETLVAILTRPRNALVKQYQKLLNMDNVELEFSEEAVKAIA 326

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A    +     GAR L+ ++E ++ D+ +     Q+ +  +I  E V
Sbjct: 327 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRQDVQKCMITKEMV 370


>gi|154509332|ref|ZP_02044974.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798966|gb|EDN81386.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
          Length = 419

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65
           PREI   L+ ++IGQ  AKRA+++A+ N ++R   +   +  D L  K NILL+GPTG G
Sbjct: 65  PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREAGNAEDMLGTKSNILLLGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +
Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                         S   DL              +P
Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAEDLHKFGMIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+    K L + D   +LT+  ++L+ QY+ L + + + L+FT +++ A+A  A
Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMELEFTHEALLAIAARA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
            N   T    GAR L ++ME+ L D+ F
Sbjct: 359 -NERKT----GARGLSSIMEQTLSDLMF 381


>gi|118497647|ref|YP_898697.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. novicida U112]
 gi|194323618|ref|ZP_03057394.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. novicida FTE]
 gi|118423553|gb|ABK89943.1| ATP-dependent Clp protease subunit X [Francisella novicida U112]
 gi|194321982|gb|EDX19464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. novicida FTE]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|21221074|ref|NP_626853.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           coelicolor A3(2)]
 gi|23813896|sp|Q9F316|CLPX_STRCO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|10280517|emb|CAC09993.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           coelicolor A3(2)]
          Length = 428

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFERGALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404


>gi|172039351|ref|YP_001805852.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp.
           ATCC 51142]
 gi|226708146|sp|B1WUD2|CLPX_CYAA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171700805|gb|ACB53786.1| ATP-dependent Clp protease, ATPase subunit [Cyanothece sp. ATCC
           51142]
          Length = 435

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P EI   LD Y+IGQ +AK+ +++A+ N ++R  L     DE    L   NILL+GPTG 
Sbjct: 76  PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKNDEDNIELQKSNILLMGPTGS 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 136 GKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 190



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 61/221 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 191 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 250

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R ADL+            
Sbjct: 251 DTSNILFICGGAFVGLERVIEQRIGKKSMGFVRPGEGQSKEKRAADLMQRVEPDDLVKFG 310

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L +     ILT   + L+ QY++L+  + + L+F+++++ A+A
Sbjct: 311 MIPEFVGRIPVMAALNPLTEETLVAILTKPRNALVKQYQKLLNMDNVELEFSQEAVKAIA 370

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
             A    +     GAR L+ ++E ++ D+ +   S  D+Q+
Sbjct: 371 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVQK 406


>gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus
           UQM 2246]
          Length = 433

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD-ELMPKNILLVGPTGVG 65
           +PR I  +LD Y+IGQQ AK+ +++A+ N ++R  L PA   + E+   NIL VGPTG G
Sbjct: 81  APRTIKEKLDGYVIGQQRAKKVLSVAVHNHYKRLSLDPASRHEVEIEKSNILFVGPTGSG 140

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R LA++   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 141 KTLLARTLAKILDVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 185



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI        I   VS EGVQ+ LL ++EG+               +Y  +
Sbjct: 195 GIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKMLEGTVSNVPPQGGRKHPEQQYIQV 254

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PAD------L 312
           +T +ILFI  G F      +SR                             AD      +
Sbjct: 255 DTSNILFICGGTFVGLEDIISRRLGRKSIGFGAVDQEQREKSLGELLSQVTADDLIEFGM 314

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++     ILT+ ++ L+ QY++L + EG  ++F    I+AL +
Sbjct: 315 IPEFVGRLPVLAPLDPLDEEAMLRILTEPKNALVRQYQKLFEMEGAEVEF---EINALKE 371

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           +A    +   D GAR L+ ++E V+ D+ +   +++ K   VI AE VR
Sbjct: 372 IARLAKAR--DTGARGLRAIVEDVMLDVMYDLPEMEHKGKHVITAEVVR 418


>gi|88801526|ref|ZP_01117054.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
 gi|88782184|gb|EAR13361.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
          Length = 411

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+YIIGQ + KR++++A+ N ++R     D  D E+   NI+LVG TG GKT
Sbjct: 63  PKEIKEFLDQYIIGQDETKRSMSVAVYNHYKRLLQTKDDDDVEIEKSNIVLVGETGTGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +AR+   PF  V+ T  T+ GYVG +VE I+  L+  A   V +++R
Sbjct: 123 LVAKTIARMLNVPFAIVDATVLTQAGYVGEDVESILSKLLQTADYDVEKAQR 174



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 56/217 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVAPKGGRKHPEQKFVEV 234

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           +T  ILFIA GAF      +S+                            P+DL     +
Sbjct: 235 DTKEILFIAGGAFSGIERIISKRLNMQAVGFSASLDDDKVDQENLLQYVIPSDLKAFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  ++  L+    R ILT+ ++ ++ QY +L + +G+     ED+++ + + 
Sbjct: 295 PEIIGRLPVLSYMNPLDAVTLRAILTEPKNAIVKQYAKLFRMDGVEFTIEEDALNYIVEK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           AV        +GAR L+++ E +  D  +      EK
Sbjct: 355 AVTYK-----LGARGLRSLCEAIFTDAMYELPSSDEK 386


>gi|320010822|gb|ADW05672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           flavogriseus ATCC 33331]
          Length = 432

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q   +     RD   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGSNRDDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408


>gi|308233829|ref|ZP_07664566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae DSM 15829]
 gi|328943801|ref|ZP_08241266.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae
           DSM 15829]
 gi|327491770|gb|EGF23544.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae
           DSM 15829]
          Length = 458

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 18/126 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------QQLP 44
           +KL    +P EI  EL +Y++GQ+ AKRA+++A+ N +RR                   P
Sbjct: 75  LKLNNLPTPHEIYDELSQYVMGQEAAKRAMSVAVYNHYRRVMTNDASIDEDINRNDDAKP 134

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
            ++  EL   NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+ 
Sbjct: 135 EEV--ELAKSNILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILL 192

Query: 105 DLVDVA 110
            L+  A
Sbjct: 193 KLITAA 198



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG++ S       K+ S     I
Sbjct: 208 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHI 267

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312
           NT +ILFI  GAF                     ++R              P DL     
Sbjct: 268 NTQNILFICGGAFVGLDKIVADRIGEKGIGFNAQLARKVDDNQDELMSKVMPQDLHKFGI 327

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV    K L + D   IL + ++ ++ QYK + + EG+ L+F ++++  +A 
Sbjct: 328 IPEFIGRIPVITTTKELTEDDLVKILIEPKNAIVKQYKRMFEIEGVELEFKDEALREIAS 387

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +A+  N+     GAR L+ + E  L++  F   SDL    VV+  E V
Sbjct: 388 LALKRNT-----GARGLRAICEATLQNTMFDLPSDLSIVKVVVTKEAV 430


>gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           populi BJ001]
 gi|238692872|sp|B1Z9C8|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium populi BJ001]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGASVQAPDDRRTGEVFRSVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F ++++  +A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +    L   + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLDSVEQVVIGPEVV 400


>gi|158317028|ref|YP_001509536.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
 gi|238686843|sp|A8L1X0|CLPX_FRASN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158112433|gb|ABW14630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
          Length = 430

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q              EL   NILL+GP
Sbjct: 64  PREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T ++LFI  GAF        SR                            P DLL    
Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYGM 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   + +L++     ILT+ ++ L+ QYK L + +G+ LDFT D+++A+AD
Sbjct: 302 IPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLLSVMY 386


>gi|303255354|ref|ZP_07341424.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
 gi|302597722|gb|EFL64798.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|323127108|gb|ADX24405.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++GPTG G
Sbjct: 64  PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L F +++++A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|309799588|ref|ZP_07693814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
 gi|308116776|gb|EFO54226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
          Length = 268

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 56  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREETEDVDLQKSNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 115 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170



 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 231 DTKNILFIVGGAF 243


>gi|251782259|ref|YP_002996561.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390888|dbj|BAH81347.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++GPTG G
Sbjct: 64  PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L F +++++A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|254374462|ref|ZP_04989943.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548]
 gi|151572181|gb|EDN37835.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548]
 gi|332678355|gb|AEE87484.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella
           cf. novicida Fx1]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
 gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
          Length = 425

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P ++   LD Y+IGQ+ AKR +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 70  APAKLKFALDEYVIGQEKAKRVLAVAVYNHYKRLKHQGKTDGVELGKSNILLIGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 130 TLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 65/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H     DL    
Sbjct: 243 DTSNILFICGGAFAGLDRVISDRTEKGSIGFSAVVKSKEEDKVFSDTVHNVETEDLVKFG 302

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     IL++ ++ L  QY+ L + EG+ L+FT +S+ A A
Sbjct: 303 LIPEFVGRLPVVATLSELDEEALITILSEPKNALTKQYQHLFELEGVELEFTTESLQAAA 362

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVR 420
           ++A+   +     GAR L++++E  L D  +   DL  +T    VV+DA  ++
Sbjct: 363 ELALERKT-----GARGLRSILESALLDCMY---DLPSRTDVVKVVMDANSMK 407


>gi|323140767|ref|ZP_08075686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414785|gb|EFY05585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phascolarctobacterium sp. YIT 12067]
          Length = 416

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRD-ELMPKNILLVGPTG 63
           P+EI + LD Y+IGQ +AK+ +++A+ N ++R     Q P   RD EL   NIL++GPTG
Sbjct: 67  PQEIKAILDEYVIGQDEAKKTLSVAVYNHYKRINYEIQNPESKRDLELQKSNILMLGPTG 126

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 SGKTLLAQTLAKILQVPFAIADATTLTEAGYVGEDVENILLKLISNA 173



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 60/233 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G         +I
Sbjct: 183 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPKGGRKHPHQEFINI 242

Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313
           +T +ILFI  GAF    H+                                P D++    
Sbjct: 243 DTTNILFICGGAFAGLEHIINARVGKKNLGFGADIRRKEEVDNEAVFAKVLPEDIMKFGI 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L+++    ILT+  + L+ QY+  ++ +G+ L+F   ++ A+A+
Sbjct: 303 IPEFAGRMPVVVTLNPLDEAALVQILTEPRNALVKQYQRFLEMDGVELEFEPGALTAIAE 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVRLHI 423
            A+  N+     GAR L++++E  + ++ +   + D   K +V +A  +R H 
Sbjct: 363 EALKRNA-----GARGLRSIIESTMRNVMYDVPSRDDVTKCIVTEA-TIRQHC 409


>gi|261868694|ref|YP_003256616.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414026|gb|ACX83397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 413

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  A++ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 64  TPHQIRAHLDDYVIGQDYAQKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+
Sbjct: 124 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S+  + G          I
Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 236

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 237 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT +++ A+
Sbjct: 297 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAM 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E VL D  +    L+  K VV++
Sbjct: 357 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVN 397


>gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
 gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 68  LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTACQHVDVDVQKSNILMIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 180 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 239

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                      P DL    
Sbjct: 240 IDTTNILFIVGGAFDGLEKIVEARLSAGSIGFNAEIVDKNDMNIDELLKKVEPKDLTKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L+SL +     IL++ ++ LI QY++L++ + + L+FT ++++ +A
Sbjct: 300 LIPEFIGRVPVNVSLQSLTRDAMVRILSEPKNALIKQYQKLLELDNVKLEFTPEALEEIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV+       IGAR L++++E V+ D+ +
Sbjct: 360 QLAVDRK-----IGARGLRSIIEGVMMDLMY 385


>gi|208779708|ref|ZP_03247052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           novicida FTG]
 gi|254373012|ref|ZP_04988501.1| hypothetical protein FTCG_00586 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570739|gb|EDN36393.1| hypothetical protein FTCG_00586 [Francisella novicida GA99-3549]
 gi|208744163|gb|EDZ90463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           novicida FTG]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVSIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|157826919|ref|YP_001495983.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia bellii
           OSU 85-389]
 gi|166215197|sp|A8GVR9|CLPX_RICB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157802223|gb|ABV78946.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU
           85-389]
          Length = 427

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A  N+ +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQK 175



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312
           +T +ILFI  GAF        SR  +                                 L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ Q+K+  + +   L   + +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLDDLDKEALVTILTKPKNAIVKQFKKQFELDEAELIVEDSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E +L D  +  ++L+++ V I  + V+
Sbjct: 356 KALAKKT-----GARGLRSIIEHLLLDSMYKVAELKKQRVTITEDVVK 398


>gi|110769975|ref|XP_001122528.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
           [Apis mellifera]
          Length = 361

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAI 69
           EI  +LD+Y+IGQ+ AK+ +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT +
Sbjct: 2   EIKKQLDQYVIGQERAKKILSVAVYNHYKRVTQMDVDSSTELQKSNIALIGPTGSGKTYL 61

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 62  AQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 102



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 112 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQELIQI 171

Query: 292 NTDHILFIASGAF----------------------HVSRPAD----------------LL 313
           NT +ILFI  GAF                       +++  D                L+
Sbjct: 172 NTTNILFIVGGAFDGIEQIVKSRLGKKVIGFSAENELNKVQDDSWTKHLTTGDLVKFGLI 231

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+++D   ILT+ ++ L+ QYK+LM  + + L+FT D++ A+AD+
Sbjct: 232 PEFIGRIPIIATLDKLDRNDLVRILTEPKNALVKQYKKLMSLDQVNLEFTPDALKAIADL 291

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++ N     +GAR L+T++E  +  I +
Sbjct: 292 AIDRN-----MGARGLRTIIENAMMGIMY 315


>gi|94676789|ref|YP_588714.1| ATP-dependent protease ATP-binding subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|166214757|sp|Q1LTK0|CLPX_BAUCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94219939|gb|ABF14098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 421

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + L+ Y+IGQ+ AK+ +A+A+ N ++R        + EL   NILL+GPTG GK
Sbjct: 66  TPHDINNHLNNYVIGQEQAKKVLAVAVYNHYKRLHHDTSHNNVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR    PF   + T  TE GYVG +VE I+  L+
Sbjct: 126 TLLADTLARFLHVPFTMADATTLTEAGYVGEDVENILHQLL 166



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 60/227 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +             +  
Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPHGGRKHPQQDFLK 237

Query: 291 INTDHILFIASGAFH-----VSR-------------------------------PADL-- 312
           ++T  ILFI  GAF      + R                               P DL  
Sbjct: 238 VDTSKILFICGGAFDGLDKVIERRMDTNNSIGFSAIIKLGSDQLNEDKLLTQVEPEDLVK 297

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F+E+++ A
Sbjct: 298 FGLIPEFIGRLPVVATLNELSEEALIRILREPKNALTKQYQALFNLEGVELEFSEEALIA 357

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
           +A  A+   +     GAR L++++E +L +  +   S L  + V+I+
Sbjct: 358 IAKKAMARKT-----GARGLRSIVEGILLETMYELPSQLHVEKVIIN 399


>gi|56707750|ref|YP_169646.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670221|ref|YP_666778.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456820|ref|ZP_03665293.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370253|ref|ZP_04986259.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874563|ref|ZP_05247273.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|61211391|sp|Q5NH46|CLPX_FRATT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56604242|emb|CAG45258.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320554|emb|CAL08641.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568497|gb|EDN34151.1| hypothetical protein FTBG_01378 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840562|gb|EET18998.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158921|gb|ADA78312.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   +D                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|148993405|ref|ZP_01822922.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194397730|ref|YP_002038201.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
 gi|238690843|sp|B5E6L2|CLPX_STRP4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147927960|gb|EDK78980.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194357397|gb|ACF55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRMGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|85373055|ref|YP_457117.1| ATP-dependent protease ATP-binding subunit ClpX [Erythrobacter
           litoralis HTCC2594]
 gi|122545320|sp|Q2NDC1|CLPX_ERYLH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|84786138|gb|ABC62320.1| ATP-dependent Clp protease ATPase subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + L+ Y+IGQ  AKR +++A+ N ++R +        EL   NILLVGPTG GK
Sbjct: 66  APSEICATLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +
Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 58/230 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313
            ++T +ILFI  GAF                    HV              S P DLL  
Sbjct: 237 QVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPDKRKVGELLEKSEPEDLLKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+      IL + ++ ++ QY +L + E + L FT++++ A+
Sbjct: 297 GLIPEFVGRLPVIATLHDLDVDALVTILQEPKNAIVKQYSKLFELEDVELTFTDEALQAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+ A+ L  T    GAR L++++E +L D  F   DL +   VVIDA+ V
Sbjct: 357 AERAI-LRKT----GARGLRSIVEGILLDTMFDLPDLDDISEVVIDADVV 401


>gi|15901412|ref|NP_346016.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15903470|ref|NP_359020.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae R6]
 gi|116517127|ref|YP_816859.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae D39]
 gi|148984921|ref|ZP_01818174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|148997363|ref|ZP_01824968.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149007515|ref|ZP_01831150.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149007878|ref|ZP_01831465.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012698|ref|ZP_01833674.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149022039|ref|ZP_01836001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483552|ref|ZP_02708504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486832|ref|ZP_02711340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491537|ref|ZP_02715680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493474|ref|ZP_02717617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|168575233|ref|ZP_02721196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225855011|ref|YP_002736523.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225857195|ref|YP_002738706.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|225859326|ref|YP_002740836.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|237650252|ref|ZP_04524504.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974]
 gi|237820865|ref|ZP_04596710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303260196|ref|ZP_07346168.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262587|ref|ZP_07348528.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264989|ref|ZP_07350904.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|303266452|ref|ZP_07352340.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|303269034|ref|ZP_07354816.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|307068212|ref|YP_003877178.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|54036857|sp|P63792|CLPX_STRR6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040895|sp|P63791|CLPX_STRPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122278295|sp|Q04JH9|CLPX_STRP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763865|sp|C1C8G0|CLPX_STRP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763868|sp|C1CFF2|CLPX_STRZJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763869|sp|C1CLR8|CLPX_STRZP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14973060|gb|AAK75656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15459081|gb|AAL00231.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Streptococcus pneumoniae R6]
 gi|116077703|gb|ABJ55423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae D39]
 gi|147756418|gb|EDK63459.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760605|gb|EDK67579.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147760874|gb|EDK67844.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763298|gb|EDK70236.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922943|gb|EDK74059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|147929883|gb|EDK80872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043151|gb|EDT51197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570188|gb|EDT90716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574196|gb|EDT94724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576310|gb|EDT96838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|183578742|gb|EDT99270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225722023|gb|ACO17877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|225723578|gb|ACO19431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225725234|gb|ACO21086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|301794578|emb|CBW37022.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV104]
 gi|301800400|emb|CBW33031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae OXC141]
 gi|301802287|emb|CBW35039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV200]
 gi|302636304|gb|EFL66798.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638693|gb|EFL69156.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302641424|gb|EFL71789.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|302644030|gb|EFL74289.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|302645508|gb|EFL75740.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|306409749|gb|ADM85176.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|332199613|gb|EGJ13688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41317]
 gi|332201010|gb|EGJ15081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47901]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|220934116|ref|YP_002513015.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|254763871|sp|B8GNT9|CLPX_THISH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219995426|gb|ACL72028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 425

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 3/101 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQ  AK+ +A+A+ N ++R +   + +DE  L   NILL+GPTG GK
Sbjct: 68  PHEIKKILDEYVIGQDRAKKILAVAVYNHYKRLE-ARNSKDEVELAKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH-----------------------------VSR------PADLL--- 313
           +T +ILFI  GAF                              VSR      P DL+   
Sbjct: 240 DTHNILFIVGGAFAGLDKVIRDRTEKGGIGFSAKVKSKEEKGPVSRTLSGVEPEDLIKYG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L++     ILT+ ++ L  QY +L + EG+ ++F ED++ A+A
Sbjct: 300 LIPEFVGRLPVVATLEELDEDALIQILTEPKNALTKQYGKLFEMEGVDIEFREDALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+   +     GAR L+T++E+VL D  +     +    VVID   +R
Sbjct: 360 AKAMERKT-----GARGLRTILEQVLLDTMYDLPSTENVSKVVIDDAVIR 404


>gi|254392446|ref|ZP_05007627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440936|ref|ZP_08215670.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706114|gb|EDY51926.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 427

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408


>gi|322517186|ref|ZP_08070069.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322124245|gb|EFX95761.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 408

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+E++  L+ Y++GQ  AKRA+++A+ N ++R        D   +L   NIL++GPTG G
Sbjct: 63  PKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D+++A+A  A
Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F     ++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390


>gi|226307300|ref|YP_002767260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           erythropolis PR4]
 gi|229493247|ref|ZP_04387039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus
           erythropolis SK121]
 gi|259491266|sp|C1A1N6|CLPX_RHOE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226186417|dbj|BAH34521.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           erythropolis PR4]
 gi|229319978|gb|EEN85807.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus
           erythropolis SK121]
          Length = 426

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH-----------------------------VSR-----PADLL---- 313
           +T ++LFI +GAF                              V R     P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAELDTVDRFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   + +L+K     IL++ ++ L+ QY+ L   +G+ L+FTE+++DA+AD
Sbjct: 301 IPEFIGRLPMIASVTNLDKESLVQILSEPKNALVKQYRRLFDMDGVELEFTEEALDAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL  + +   S  D+++  VV+ AE V
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVTAETV 403


>gi|210617499|ref|ZP_03291602.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787]
 gi|210149286|gb|EEA80295.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787]
          Length = 478

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 69/112 (61%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I ++LD Y+IGQ+ AK+A+++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 128 APHKIKAQLDDYVIGQEYAKKAISVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKT 187

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R
Sbjct: 188 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 239



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 240 GIIFIDEIDKIAKKKNTNQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 299

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 300 KNILFICGGAFPDLEQIIKERLNKQASMGFIADLKDKYNNDKDILSKVTVEDIRNFGMIP 359

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L++     IL + ++ ++ QY++L++ + + L+F E+++ A+A  A
Sbjct: 360 EFIGRLPIIFTLQGLDEDMLVKILKEPKNAILKQYQKLLELDEVKLNFDEEALHAIARKA 419

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L++++E  + DI +    D     V I  EY+
Sbjct: 420 MK-----KDTGARALRSIIEEFMLDIMYEIPKDDNIGQVTITKEYI 460


>gi|157165299|ref|YP_001467559.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus
           13826]
 gi|112801142|gb|EAT98486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           concisus 13826]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            +P+E+ + LD Y+IGQ  AK+  ++ + N ++R    +D++D  E+   NILLVGPTG 
Sbjct: 60  LTPKELKAVLDNYVIGQDRAKKVFSVGVYNHYKRIFKQSDIKDDTEISKSNILLVGPTGS 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++ +
Sbjct: 120 GKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANGDVKKAEQ 174



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 55/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 175 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 234

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILF+  GAF                                 +  P DL     +P
Sbjct: 235 DTTNILFVCGGAFDGLLDIIERRVGKNVLGFNQEKRGKNEKENLLSLLEPDDLVKYGLIP 294

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + K D   ILT+ ++ ++ QY++L   +G  L F +++++ +A +A
Sbjct: 295 ELIGRLHVVATLNEITKEDMVKILTEPKNAILKQYQKLCAIDGATLKFDDEALEEIASLA 354

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +   +     GAR L+++ME ++ DI +   +L++  +VI  E V+
Sbjct: 355 IERKT-----GARGLRSIMEELMTDIMYDLPELKDYDIVISKETVK 395


>gi|91205314|ref|YP_537669.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii
           RML369-C]
 gi|122425788|sp|Q1RJ84|CLPX_RICBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91068858|gb|ABE04580.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           bellii RML369-C]
          Length = 427

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A  N+ +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQK 175



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312
           +T +ILFI  GAF        SR  +                                 L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ Q+K+  + +   L   + +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLDDLDKEALVTILTKPKNAIVKQFKKQFELDEAELIVEDSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+   +     GAR L++++E +L D  +  ++L+++ V I  + V+
Sbjct: 356 KALAKKT-----GARGLRSIIEHLLLDSMYKVAELKKQRVTITEDVVK 398


>gi|325000574|ref|ZP_08121686.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudonocardia sp.
           P1]
          Length = 429

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           P EI   LD+Y++GQ D KR +++A+ N ++R Q    LR          E+   NIL++
Sbjct: 64  PAEIHDFLDQYVVGQPDTKRTLSVAVYNHYKRIQAGERLRASGNGDGDGIEIAKSNILML 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 184 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 243

Query: 292 NTDHILFIASGAF---------HVSR----------------PAD--------------L 312
           +T ++LFI +GAF          V +                PA+              L
Sbjct: 244 DTTNVLFIVAGAFAGLERIIGERVGKSGIGFGADIRSKKDMDPAESFAETLPEDLIKFGL 303

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + SL+K     ILT+  + L+ QY++L + +G+ LDF E++++A+AD
Sbjct: 304 IPEFIGRLPIVASVTSLDKDALVKILTEPRNALVKQYRKLFEMDGVELDFAEEALEAVAD 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423
           +A+ L  T    GAR L+ +ME VL  + +   S  D+ +  VV+ A+ V+ ++
Sbjct: 364 LAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVVTAQTVKENV 410


>gi|319947979|ref|ZP_08022156.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea
           P4]
 gi|319438325|gb|EFV93268.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea
           P4]
          Length = 422

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI + LD Y++GQ  AKR +A+A+ N ++R ++ A L      EL   NIL++GPTG 
Sbjct: 64  PAEIHAFLDEYVVGQDAAKRNLAVAVYNHYKRIRVGAALGRGDGVELAKSNILMLGPTGC 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADL----- 312
           +T ++LFI +GAF          V R                         P DL     
Sbjct: 239 DTSNVLFIVAGAFQGLEKIVGDRVGRKGLGFGAEVASKNELDTTDNFSEVMPEDLVKFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + SL++     IL + ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 299 IPEFIGRLPVVATVTSLDREALVNILAEPKNALVKQYARLFEMDGVELEFTQDALEAVAD 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+ L  T    GAR L+ +ME VL  + +      +   VV+  E VR
Sbjct: 359 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPGRDDVARVVVTGETVR 402


>gi|148244364|ref|YP_001219058.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326191|dbj|BAF61334.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 431

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           ++++P+++ S L+ Y+IGQ+ AK+ +++A+ N ++R Q      + EL   NIL++GPTG
Sbjct: 68  WDYTPKQLTSFLNDYVIGQEHAKKVLSVAVYNHYKRLQNDHISNEVELDKSNILMIGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT +++ LAR+   PF   + T  TE GYVG +VE ++++L+
Sbjct: 128 SGKTLLAQTLARILDIPFTVADATTLTEAGYVGDDVENVVKNLL 171



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  R     I   VS EGVQ+ +L L+EG+  SV  + G          +
Sbjct: 184 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTIASVPPQGGRKHPNQETIDV 243

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T +ILFI  GAF                                     + +P DL+  
Sbjct: 244 DTSNILFICGGAFDGLDKIINRRVKKVTGIGFSVDVKDQNEEKALSDLFVLIQPEDLIKF 303

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV+  L  L++     IL + ++++I Q++E+   EG+ L F + S+ A+
Sbjct: 304 GLIPELVGRLPVQTVLSELDEIALVKILIEPKNSVIKQFQEIFSMEGVKLIFKKPSLLAI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A +A+   +     GAR L++++E +L D  F    L + T VVID   V
Sbjct: 364 AKLAIKRKT-----GARGLRSILEDLLLDTMFELPSLLDVTEVVIDKTVV 408


>gi|222524927|ref|YP_002569398.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus sp.
           Y-400-fl]
 gi|222448806|gb|ACM53072.1| Sigma 54 interacting domain protein [Chloroflexus sp. Y-400-fl]
          Length = 429

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++   LD+Y+IGQ  AK A+A+A+ N ++R +  A + D E+   NILL+GPTG GK
Sbjct: 72  TPRKLRERLDQYVIGQDRAKIALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +ARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 132 TLLAQTMARLLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 175



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG                +Y   
Sbjct: 185 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPF 244

Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313
           +T ++LFI  GAF  +++                                 P DL+    
Sbjct: 245 DTTNVLFICGGAFEGITKIIAKRLRGKQLIGFGSNPVNPVEEEGALLAQITPDDLMHFGF 304

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L+ L++     ILT+  + +I QY++L   +   L+FT DS++A+ D
Sbjct: 305 IPEFVGRLPVIVALEPLSREAMLRILTEPRNAIIKQYQKLFALDHCELEFTPDSLEAIVD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L++++E VL D+ F
Sbjct: 365 RAMAART-----GARALRSIVEEVLLDVMF 389


>gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688765|sp|B1LW29|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium radiotolerans JCM 2831]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGATVQAPDDRRTGEIFRSVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E + L F ++++  +A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDEALSLVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +    L+  + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVV 400


>gi|322411594|gb|EFY02502.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++GPTG G
Sbjct: 64  PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L F +++++A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|296876431|ref|ZP_06900483.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|312866721|ref|ZP_07726935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
 gi|296432721|gb|EFH18516.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|311097802|gb|EFQ56032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+     EL   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREDETDVELQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381


>gi|292487468|ref|YP_003530340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           amylovora CFBP1430]
 gi|292898710|ref|YP_003538079.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198558|emb|CBJ45666.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552887|emb|CBA19932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia
           amylovora CFBP1430]
          Length = 424

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y++GQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGIGIGFSASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|183603154|ref|ZP_02712907.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
 gi|183572734|gb|EDT93262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
          Length = 402

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 56  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 170



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373


>gi|89256250|ref|YP_513612.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica LVS]
 gi|156502311|ref|YP_001428376.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010853|ref|ZP_02275784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367563|ref|ZP_04983589.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica 257]
 gi|254369240|ref|ZP_04985252.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144081|emb|CAJ79332.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253379|gb|EBA52473.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica 257]
 gi|156252914|gb|ABU61420.1| ATP-dependent Clp protease, ATP-binding subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122190|gb|EDO66330.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 417

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina
           loihiensis L2TR]
 gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis
           L2TR]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 61/99 (61%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+ I   LD Y+IGQ  AK+ +++A+ N ++R +  A    EL   NILL+GPTG GKT 
Sbjct: 67  PKAIRKHLDDYVIGQDRAKKVLSVAVYNHYKRLRGSAKQEVELGKSNILLIGPTGSGKTF 126

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 LAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLL 165



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAFH---------------------------------VSR--PADL---- 312
           +T  ILFI  GAF                                  +++  P DL    
Sbjct: 238 DTSKILFICGGAFAGLNKVIEQRLSTGTGIGFGAEVKSKTQSEEGAIIAKVEPEDLVRYG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L  L++     IL + ++ L  QY  L + E + L+F ED++ A+A
Sbjct: 298 LIPEFIGRLPVVATLDELDEEALIEILREPKNALTKQYSALFEMEDVELEFREDALRAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+   +     GAR L++++E VL
Sbjct: 358 KKAMARKT-----GARGLRSIVEGVL 378


>gi|28572441|ref|NP_789221.1| ATP-dependent protease ATP-binding subunit [Tropheryma whipplei
           TW08/27]
 gi|46576526|sp|Q83MI6|CLPX_TROW8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28410572|emb|CAD66959.1| ATP dependent Clp Protease ATP binding subunit [Tropheryma whipplei
           TW08/27]
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 4/111 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P EI + LD Y+IGQQ AKR +++A+ N ++R    +  ++   EL   NILL+GPTG G
Sbjct: 71  PAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGCG 130

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115
           KT +++ LAR+   PF   + T  TE GYVG +VE ++  L+ D   +I R
Sbjct: 131 KTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDITR 181



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKY--GSI 291
           GIV +DE DKI  +     I   VS EGVQ+ LL ++EG++ S         T+Y   SI
Sbjct: 185 GIVCIDEIDKISRKADSPSITRDVSGEGVQQALLKILEGTAASVPLQGGKKHTQYEQASI 244

Query: 292 NTDHILFIASGAF---------HVSR---------------------PADL-----LPEI 316
           NT +ILFI +GAF          + R                     P DL     +PE 
Sbjct: 245 NTRNILFIVAGAFSGIEEIISSRIGRSNMGFGSDLLRKDTDVFDQILPEDLRKFGLIPEF 304

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+   +  L+  D   +LT+ ++ L+ QYK L   +G+ L F  ++++A+ ++A+ 
Sbjct: 305 IGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALK 364

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
             +     GAR L++VME +L  I F   S  D++  +V I AE V
Sbjct: 365 RKT-----GARALRSVMESILSPIMFDVPSRGDIE--SVRITAETV 403


>gi|315174262|gb|EFU18279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1346]
          Length = 468

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%)

Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152
           I  + +D+   I+ E   DE VRE   +   + IL+ L    +G+     T  V      
Sbjct: 85  ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K++   E +  + D+E+       SN  + G    G   L++  +K +          S+
Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270
            +    +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  I+T ++LFI  GAF               
Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                             H+  P DLL     PE  GR PV   L  L   D   ILT+ 
Sbjct: 318 IGFGKTNSTLNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY++L+  +   L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ 
Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431

Query: 402 F 402
           F
Sbjct: 432 F 432


>gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit [Methylobacterium
           extorquens PA1]
 gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           chloromethanicum CM4]
 gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
 gi|238687353|sp|A9W5F6|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763853|sp|B7KNT1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium extorquens PA1]
 gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium chloromethanicum CM4]
 gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
          Length = 423

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +  N+ R  R
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                     V  P D                   L
Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGASVQAPDDRRTGEVFRSVEPEDLLKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F ++++  +A 
Sbjct: 298 IPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVAR 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +    L+  + VVI  E V
Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVV 400


>gi|322389613|ref|ZP_08063161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143612|gb|EFX39042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 410

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+     EL   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREDETDVELQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381


>gi|292487470|ref|YP_003530342.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Erwinia
           amylovora CFBP1430]
 gi|292898712|ref|YP_003538081.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198560|emb|CBJ45668.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552889|emb|CBA19934.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora CFBP1430]
 gi|312171575|emb|CBX79833.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora ATCC BAA-2158]
          Length = 424

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI   LD Y++GQ+ AK+ +++A+ N ++R      LR+       EL   NILL+G
Sbjct: 66  TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311
           +T  ILFI  GAF      VS+  D                                   
Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGIGIGFSASVKGKSEKATEGELLAQVEPEDLIKF 298

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+
Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFREEALKAI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399


>gi|148988623|ref|ZP_01820056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925824|gb|EDK76899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
          Length = 410

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIEFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|148272647|ref|YP_001222208.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|166214771|sp|A5CR08|CLPX_CLAM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147830577|emb|CAN01512.1| ATP-dependent protease, ATP-binding subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 426

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60
           P+EI   LD Y+IGQ+ AKRA+++A+ N ++R +      PA+      E+   NILL+G
Sbjct: 66  PKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAETVGDEIEIAKSNILLIG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314
           +T ++LFI +GAF      +S+                           P DL     +P
Sbjct: 245 DTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDVNADVFGEVLPEDLHKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT   + L+ QY+ + + +G+ L+F + +++++AD+A
Sbjct: 305 EFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFELDGVELEFEQGALESIADLA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           V L  T    GAR L+ ++E VL  I F   SD +   VVI  E V
Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMFDIPSDDEVGRVVITRESV 405


>gi|28493446|ref|NP_787607.1| ATP-dependent protease ATP-binding subunit ClpX [Tropheryma
           whipplei str. Twist]
 gi|46576524|sp|Q83G50|CLPX_TROWT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28476487|gb|AAO44576.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei
           str. Twist]
          Length = 423

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 4/111 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P EI + LD Y+IGQQ AKR +++A+ N ++R    +  ++   EL   NILL+GPTG G
Sbjct: 71  PAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGCG 130

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115
           KT +++ LAR+   PF   + T  TE GYVG +VE ++  L+ D   +I R
Sbjct: 131 KTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDITR 181



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 58/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKY--GSI 291
           GIV +DE DKI  +     I   VS EGVQ+ LL ++EG+  S         T+Y   SI
Sbjct: 185 GIVCIDEIDKISRKADSPSITRDVSGEGVQQALLKILEGTVASVPLQGGKKHTQYEQASI 244

Query: 292 NTDHILFIASGAF---------HVSR---------------------PADL-----LPEI 316
           NT +ILFI +GAF          + R                     P DL     +PE 
Sbjct: 245 NTRNILFIVAGAFSGIEEIISSRIGRSNMGFGSDLLRKDTDVFDQILPEDLRKFGLIPEF 304

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+   +  L+  D   +LT+ ++ L+ QYK L   +G+ L F  ++++A+ ++A+ 
Sbjct: 305 IGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALK 364

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
             +     GAR L++VME +L  I F   S  D++  +V I AE V
Sbjct: 365 RKT-----GARALRSVMESILSPIMFDVPSRGDIE--SVRITAETV 403


>gi|329572811|gb|EGG54439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1467]
          Length = 468

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 154/361 (42%), Gaps = 73/361 (20%)

Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152
           I  + +D+   I+ E   DE VRE   +   + IL+ L    +G+     T  V      
Sbjct: 85  ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K++   E +  + D+E+       SN  + G    G   L++  +K +          S+
Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270
            +    +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  I+T ++LFI  GAF               
Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                             H+  P DLL     PE  GR PV   L  L   D   ILT+ 
Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY+ L+  +   L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ 
Sbjct: 377 KNALVKQYQNLLSLDDNKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431

Query: 402 F 402
           F
Sbjct: 432 F 432


>gi|284047884|ref|YP_003398223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidaminococcus fermentans DSM 20731]
 gi|283952105|gb|ADB46908.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidaminococcus fermentans DSM 20731]
          Length = 423

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 7/115 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P+EI + LD Y+IGQ++AK+ +A+A+ N ++R    Q    D+  EL   NIL++GPTG 
Sbjct: 67  PKEIKAILDEYVIGQEEAKKTLAVAVYNHYKRINYEQGHHQDV--ELQKSNILMLGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A  +I R  R
Sbjct: 125 GKTLLAQTLAKILKVPFAIADATSLTEAGYVGEDVENILLRLIQNADYDIARAER 179



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 180 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQELIQI 239

Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312
           +T +ILFI  GAF                                      P D     L
Sbjct: 240 DTTNILFICGGAFAGLENVINARTGKKSMGFGAEIPTQAEKKSENPFRQVLPEDFVKYGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L +L++     ILT+ ++ L  QY+ L+  + + LDF E ++ A+A 
Sbjct: 300 IPEFVGRLPVVVTLDNLDEKALIKILTEPKNALTKQYEHLLAMDHVELDFEEGALKAIAH 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
            A+  N+     GAR L+ ++E +++++ +   + D  EK +V
Sbjct: 360 EALARNA-----GARGLRAIIEGIMKNVMYEVPSRDNVEKCIV 397


>gi|160890573|ref|ZP_02071576.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492]
 gi|270295710|ref|ZP_06201910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D20]
 gi|317479885|ref|ZP_07939002.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36]
 gi|156859572|gb|EDO53003.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492]
 gi|270273114|gb|EFA18976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D20]
 gi|316903959|gb|EFV25796.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36]
          Length = 414

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTATIDKSNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYIKLFEMDNVKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           AV        +GAR L++++E ++ D  F     Q+   V+  +Y +
Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDAMFEIPSEQKDNFVVTLDYAK 400



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|94987237|ref|YP_595170.1| ATP-dependent protease ATP-binding subunit ClpX [Lawsonia
           intracellularis PHE/MN1-00]
 gi|226706637|sp|Q1MQ78|CLPX_LAWIP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94731486|emb|CAJ54849.1| ATP-dependent protease Clp, ATPase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 417

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61
            +P+EI   LD Y+IGQ++AK+ +A+A+ N ++R    +++ ++  D EL   N+LLVGP
Sbjct: 59  LTPQEIKERLDEYVIGQEEAKKILAVAVHNHYKRVFYAEKISSEHGDVELEKSNVLLVGP 118

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 119 SGSGKTLLAKTLAKILRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 66/226 (29%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284
           D+DT  +         GI+++DE DKI  R  G  I   VS EGVQ+ LL ++EG+  ++
Sbjct: 170 DLDTASK---------GIIYIDEIDKISRRSDGPSITRDVSGEGVQQALLKIIEGTEANI 220

Query: 285 STKYGS---------INTDHILFIASGAF--------------------HVS-------- 307
             K G          +NT +ILFI  GAF                     VS        
Sbjct: 221 PPKGGRKHPQQEFIRMNTSNILFIVGGAFIGLDKIVEQRIRGGSMGFGAKVSGKKERPLG 280

Query: 308 ------RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV  H+  L++ D   +L + ++ L  QY++L + +
Sbjct: 281 QLLEQVHPNDLVQFGLIPEFVGRIPVLTHVDDLSEEDLVRVLVEPKNALTRQYQKLFELD 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            + L FT D++ A+A  A+   +     GAR L+ VME ++ DI +
Sbjct: 341 NVTLRFTSDALKAIAHKAIERKT-----GARGLRNVMESIMLDIMY 381


>gi|293382411|ref|ZP_06628348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis R712]
 gi|293388260|ref|ZP_06632776.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis S613]
 gi|312908362|ref|ZP_07767326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 512]
 gi|312910565|ref|ZP_07769407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 516]
 gi|291080187|gb|EFE17551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis R712]
 gi|291082342|gb|EFE19305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis S613]
 gi|310625776|gb|EFQ09059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 512]
 gi|311289113|gb|EFQ67669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 516]
          Length = 468

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%)

Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152
           I  + +D+   I+ E   DE VRE   +   + IL+ L    +G+     T  V      
Sbjct: 85  ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K++   E +  + D+E+       SN  + G    G   L++  +K +          S+
Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270
            +    +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  I+T ++LFI  GAF               
Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGKKT 317

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                             H+  P DLL     PE  GR PV   L  L   D   ILT+ 
Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY++L+  +   L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ 
Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431

Query: 402 F 402
           F
Sbjct: 432 F 432


>gi|269837421|ref|YP_003319649.1| Sigma 54 interacting domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786684|gb|ACZ38827.1| Sigma 54 interacting domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 419

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 67/108 (62%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+ +  +L  Y+IGQ  AK+ +++A+ N ++R   P D   EL   NILL+GPTG GKT
Sbjct: 66  TPKALYEQLSNYVIGQDRAKKILSVAVYNHYKRITAPNDDDVELQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A ++ R
Sbjct: 126 LLAQTLAKLLDVPFSIADATALTEAGYVGEDVENILLRLIQAAGDVQR 173



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 63/243 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 177 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEYIQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T +ILFI  GAF                                H  +  DLL     P
Sbjct: 237 DTRNILFICGGAFEGLEDIVRRRLGREATLGFGAPLRTERQESVLHHVQQEDLLKYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV V L  L + +   IL + ++ ++ QY++++K + + L FT+D+++A AD A
Sbjct: 297 EFVGRLPVVVALDHLTRDELARILVEPKNAVVKQYQKMLKLDDVELVFTQDALEAAADYA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR-------LHIGDF 426
           +   +     GAR L+T +E VL D+ +    L+  +  +I+A+ +        + +G+ 
Sbjct: 357 LKRGT-----GARGLRTTIEEVLLDVMYEIPSLEGVRKCIINADVINRRRPPLLMSVGEE 411

Query: 427 PSE 429
           P E
Sbjct: 412 PVE 414


>gi|149192522|ref|ZP_01870700.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
 gi|148833642|gb|EDL50701.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
          Length = 417

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I + LD Y+IGQ  AK+ +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 58  TPRDIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 118 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 159



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 102/228 (44%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 172 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 231

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 232 DTSKILFICGGAFAGLDKVIDQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 291

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L   EG+ L+F ED++ A+
Sbjct: 292 GLIPEFIGRLPVTTTLTELDEDALIQILNEPKNALTKQYGALFDLEGVELEFREDALRAI 351

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 352 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 392


>gi|121638340|ref|YP_978564.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224990834|ref|YP_002645521.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|166214786|sp|A1KLF3|CLPX_MYCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763856|sp|C1AES4|CLPX_MYCBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121493988|emb|CAL72465.1| Probable ATP-dependent clp protease ATP-binding subunit clpX
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773947|dbj|BAH26753.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 426

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGARKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|114777029|ref|ZP_01452049.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552550|gb|EAU55010.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 423

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 68/111 (61%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD Y+IGQ+  KR +A+A+ N ++R         E+   N+LL+GPTG GKT 
Sbjct: 68  PAEIKAYLDDYVIGQEGPKRLLAVAVYNHYKRIAHNEKGDVEISKSNVLLLGPTGCGKTL 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           +++ LA++   PF+  + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 128 LAQTLAKVFDVPFVMADATTLTEAGYVGEDVENIILKLLQAADYDVDKAQR 178



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 62/228 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DK+  +  G  I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 179 GIVYIDEVDKLSRKAEGPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILF+  GAF                                   HV  P DL+   
Sbjct: 239 DTTNILFVLGGAFAGLEKMIESKGKQRSIGFGAKVSSEDEKDIGEILSHV-EPEDLIKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR P    L +L+K+    IL + ++ LI QY+ LM+ +G+ L F++D+++A+A
Sbjct: 298 LIPELVGRLPAVATLGNLDKAALLRILKEPKNALIKQYQALMQYDGVELSFSDDALEAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
           + A+   +     GAR L+++ME V+ D+ +      D+++  V  DA
Sbjct: 358 EKALARKT-----GARGLRSIMESVMLDVMYDIPGMPDVEQCVVNADA 400


>gi|52081305|ref|YP_080096.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           licheniformis ATCC 14580]
 gi|52786684|ref|YP_092513.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           licheniformis ATCC 14580]
 gi|319647218|ref|ZP_08001440.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           BT1B_CT2]
 gi|81384902|sp|Q65GJ4|CLPX_BACLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52004516|gb|AAU24458.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52349186|gb|AAU41820.1| ClpX [Bacillus licheniformis ATCC 14580]
 gi|317390565|gb|EFV71370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           BT1B_CT2]
          Length = 421

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PKEIREILDEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKHEDLEKEALLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L++     ILT  ++ L+ QY+++++ + + L F ++++  +A  
Sbjct: 296 PEFIGRLPIIASLEPLDEKALVEILTKPKNALVKQYRKMLELDDVELVFEDEALTEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   S  D+++  +    V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCVITGKTVTDGEPPRLIMKD 409


>gi|284036069|ref|YP_003385999.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74]
 gi|283815362|gb|ADB37200.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74]
          Length = 410

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 58/233 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V+            +  ++
Sbjct: 172 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPQGGRKHPDQRLIAL 231

Query: 292 NTDHILFIASGAF-----HVS-----RPAD-----------------------------L 312
           NT++ILFI  GAF     H++     RP                               L
Sbjct: 232 NTENILFICGGAFDGIERHITKRINTRPIGFSGDRRLNDTFERGHLMRYISALDLKSFGL 291

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  HL+ L++     ILT+ ++ +  QY +L + EGI L +   +++ + D
Sbjct: 292 IPELIGRLPVLTHLEPLDRDALMQILTEPKNAITKQYNKLFQMEGITLHWDPSALNYIVD 351

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
            A+        +GAR L+++ E ++ D  F   S    K + +  EY R   G
Sbjct: 352 QALQYG-----LGARGLRSICESIITDAMFEMPSQTGVKELTVSLEYAREKFG 399



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILL 58
           ++L  N   P ++   LD+Y+IGQ DAK+++ +A+ N ++R   P    D  + K NI++
Sbjct: 51  VELNINLIKPIDMKRHLDQYVIGQDDAKKSITVAVYNHYKRLMQPKTNDDVTIEKSNIIM 110

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VG TG GKT ++R +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 111 VGETGTGKTYLARSIAKILEVPFCIADATVITEAGYVGEDVETILTRLLQAA 162


>gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
 gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
          Length = 433

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 64/104 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI S LD Y+IGQ  AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 65  MKPKEIKSFLDDYVIGQDSAKKVLSVAVYNHYKRITSRRSMDVDVQKSNILMLGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 TYVAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 177 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 236

Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312
           I+T +ILFI  GAF        SR                            P DL    
Sbjct: 237 IDTTNILFICGGAFDGLEKIIESRLSAGSIGFNAEIVDKNRTDIDDLLKKVLPQDLVKFG 296

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L+ L+K     ILT+ ++ LI QY++L + + + L+ TE++++ +A
Sbjct: 297 LIPEFIGRVPVTVSLELLDKEALVKILTEPKNALIKQYQKLFELDDVKLELTEEAVERIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++AV   +     GAR L+++ME V+ DI +
Sbjct: 357 ELAVERKT-----GARGLRSIMESVMMDIMY 382


>gi|302560652|ref|ZP_07312994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
 gi|302478270|gb|EFL41363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
          Length = 428

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKREMESKDQFEEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404


>gi|225374726|ref|ZP_03751947.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM
           16841]
 gi|225213430|gb|EEG95784.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM
           16841]
          Length = 544

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  + +D++D  E+   N+L++GPTG G
Sbjct: 190 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDVQDGVEIEKSNMLMIGPTGCG 247

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 248 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 301



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EG+ V    G+           +N
Sbjct: 301 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 360

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 361 TKNILFICGGAFPDLEDIIKERLNKEASIGFKADLKDKYDNDENLLAKVTTEDVRKFGMI 420

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L++L +     IL + ++ +I QY++L+  + + L F ED++ ++A  
Sbjct: 421 PEFLGRLPVMFTLEALTEDMLVRILKEPKNAIIRQYEKLLAMDEVKLVFDEDALHSIAKE 480

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L++++E  + DI +    D     V I  +YV 
Sbjct: 481 AKE-----KKVGARALRSIIEDFMLDIMYEIPKDDNIGMVTITKDYVE 523


>gi|332072416|gb|EGI82899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17570]
 gi|332072739|gb|EGI83220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17545]
          Length = 401

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 169



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|300866515|ref|ZP_07111205.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
 gi|300335472|emb|CBN56365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
          Length = 447

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60
           PREI + LD ++IGQ +AK+ +++A+ N ++R           P     EL   NILL+G
Sbjct: 84  PREIKNFLDEHVIGQDEAKKVLSVAVYNHYKRLSFVPVKGSTKPPTDEVELQKSNILLIG 143

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 144 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 202



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF----------------HVSRPADLL---------------------- 313
           +T +ILFI  GAF                   +P DLL                      
Sbjct: 263 DTSNILFICGGAFVGLDKVIEQRTGKKSMGFVQPGDLLPKEKRTADVLKQLEPDDLVKFG 322

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   ++ LN+     ILT+ ++ L+ QY++L+K + + LDF  ++I A+A
Sbjct: 323 MIPEFIGRIPMLAVVEPLNEETLMAILTEPKNALVKQYQKLLKMDNVQLDFKSEAIRAIA 382

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 383 QEAYRRKT-----GARALRGIVEELMLDVMY 408


>gi|15609594|ref|NP_216973.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis H37Rv]
 gi|31793638|ref|NP_856131.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           bovis AF2122/97]
 gi|148662292|ref|YP_001283815.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis H37Ra]
 gi|148823657|ref|YP_001288411.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis F11]
 gi|167969782|ref|ZP_02552059.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404393|ref|ZP_03416574.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 02_1987]
 gi|215412214|ref|ZP_03420976.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427840|ref|ZP_03425759.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T92]
 gi|215431403|ref|ZP_03429322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis EAS054]
 gi|215446703|ref|ZP_03433455.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T85]
 gi|218754189|ref|ZP_03532985.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis GM 1503]
 gi|219558454|ref|ZP_03537530.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T17]
 gi|253798464|ref|YP_003031465.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232591|ref|ZP_04925918.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis C]
 gi|254365233|ref|ZP_04981279.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551505|ref|ZP_05141952.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187464|ref|ZP_05764938.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201582|ref|ZP_05769073.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|260205761|ref|ZP_05773252.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis K85]
 gi|289443983|ref|ZP_06433727.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|289448100|ref|ZP_06437844.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553752|ref|ZP_06442962.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 605]
 gi|289570612|ref|ZP_06450839.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T17]
 gi|289575151|ref|ZP_06455378.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis K85]
 gi|289746239|ref|ZP_06505617.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|289751063|ref|ZP_06510441.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T92]
 gi|289754565|ref|ZP_06513943.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis EAS054]
 gi|289758589|ref|ZP_06517967.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T85]
 gi|289762626|ref|ZP_06522004.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis GM 1503]
 gi|294994435|ref|ZP_06800126.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 210]
 gi|297635063|ref|ZP_06952843.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732054|ref|ZP_06961172.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN R506]
 gi|298525935|ref|ZP_07013344.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776726|ref|ZP_07415063.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu001]
 gi|306780500|ref|ZP_07418837.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu002]
 gi|306785252|ref|ZP_07423574.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu003]
 gi|306789611|ref|ZP_07427933.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu004]
 gi|306793938|ref|ZP_07432240.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu005]
 gi|306798332|ref|ZP_07436634.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu006]
 gi|306804208|ref|ZP_07440876.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu008]
 gi|306808778|ref|ZP_07445446.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu007]
 gi|306968610|ref|ZP_07481271.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu009]
 gi|306972837|ref|ZP_07485498.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu010]
 gi|307080542|ref|ZP_07489712.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu011]
 gi|313659390|ref|ZP_07816270.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN V2475]
 gi|61221150|sp|P0A528|CLPX_MYCTU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61221151|sp|P0A529|CLPX_MYCBO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214790|sp|A5U5F3|CLPX_MYCTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2791497|emb|CAA16034.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
           [Mycobacterium tuberculosis H37Rv]
 gi|31619231|emb|CAD97345.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
           [Mycobacterium bovis AF2122/97]
 gi|124601650|gb|EAY60660.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis C]
 gi|134150747|gb|EBA42792.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506444|gb|ABQ74253.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148722184|gb|ABR06809.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis F11]
 gi|253319967|gb|ACT24570.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 1435]
 gi|289416902|gb|EFD14142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|289421058|gb|EFD18259.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438384|gb|EFD20877.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 605]
 gi|289539582|gb|EFD44160.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis K85]
 gi|289544366|gb|EFD48014.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T17]
 gi|289686767|gb|EFD54255.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|289691650|gb|EFD59079.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T92]
 gi|289695152|gb|EFD62581.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis EAS054]
 gi|289710132|gb|EFD74148.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis GM 1503]
 gi|289714153|gb|EFD78165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T85]
 gi|298495729|gb|EFI31023.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214887|gb|EFO74286.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu001]
 gi|308326648|gb|EFP15499.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu002]
 gi|308330074|gb|EFP18925.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu003]
 gi|308333914|gb|EFP22765.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu004]
 gi|308337717|gb|EFP26568.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu005]
 gi|308341398|gb|EFP30249.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu006]
 gi|308344884|gb|EFP33735.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu007]
 gi|308349195|gb|EFP38046.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu008]
 gi|308353816|gb|EFP42667.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu009]
 gi|308357765|gb|EFP46616.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu010]
 gi|308361710|gb|EFP50561.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu011]
 gi|326904071|gb|EGE51004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis W-148]
 gi|328458232|gb|AEB03655.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 4207]
          Length = 426

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|294054260|ref|YP_003547918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613593|gb|ADE53748.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coraliomargarita akajimensis DSM 45221]
          Length = 461

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 15/121 (12%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRD- 49
           FN   P EI + LD +II Q  AKRA+A+A+ N ++R              +L A+  D 
Sbjct: 71  FNLVKPGEIKAHLDEHIISQDYAKRALAVAVYNHYKRLRSEERIEAATEFAELDAEFNDV 130

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++   NILL+GPTG GKT ++R LA++ G PF   + T  TE GYVG +VE I+  L+  
Sbjct: 131 QIEKSNILLLGPTGSGKTLLARTLAKILGVPFAIADATTLTEAGYVGEDVENIVLRLLQT 190

Query: 110 A 110
           A
Sbjct: 191 A 191



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 201 GIIYVDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTVCNVPPQGGRKHPNQEYIQL 260

Query: 292 NTDHILFIASGAF---------------------HVSR--------------PADL---- 312
           +T +ILFI  GAF                     H +R              P DL    
Sbjct: 261 DTSNILFICGGAFVGLDKIVQGRMGSKAMGFDTTHNARTNEVPVSELLRETQPEDLVHFG 320

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   L  L+ SD   IL +T++ LI QY +L   +G  L FT+D+I A+A
Sbjct: 321 MIPEFIGRLPMVAVLDELSVSDLEHILQNTKNALIKQYSKLFMMDGAKLHFTKDAIRAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+ L +     GAR L+++MER++ D+ +
Sbjct: 381 EKAIALKT-----GARALRSIMERIMLDVMY 406


>gi|302143904|emb|CBI23009.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 19/127 (14%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-DLRD----- 49
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R      Q+ PA D  D     
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218

Query: 50  ------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
                 EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+  YVG +VE I+
Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESIL 278

Query: 104 RDLVDVA 110
             L+ VA
Sbjct: 279 YKLLMVA 285



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 295 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 354

Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311
           +T  ILFI  GAF                              P D              
Sbjct: 355 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESS 414

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +L ++    +LT+ ++ L  QYK++ +  G+ L FT++
Sbjct: 415 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 474

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  ++  A++ N+     GAR L++++E +L +  +   D++    +IDA
Sbjct: 475 ALRLISRKAMSKNT-----GARGLRSILENILMNAMYEIPDVRTGNDIIDA 520


>gi|298230526|ref|ZP_06964207.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255218|ref|ZP_06978804.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503307|ref|YP_003725247.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298238902|gb|ADI70033.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 410

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|227519263|ref|ZP_03949312.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227555530|ref|ZP_03985577.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|229545496|ref|ZP_04434221.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|229549742|ref|ZP_04438467.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|307268264|ref|ZP_07549648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4248]
 gi|307272885|ref|ZP_07554132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0855]
 gi|307275638|ref|ZP_07556779.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2134]
 gi|307280532|ref|ZP_07561581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0860]
 gi|307287931|ref|ZP_07567964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0109]
 gi|307295961|ref|ZP_07575793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0411]
 gi|312900930|ref|ZP_07760224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0470]
 gi|312902702|ref|ZP_07761906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0635]
 gi|312950951|ref|ZP_07769861.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0102]
 gi|227073275|gb|EEI11238.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227175335|gb|EEI56307.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|229305011|gb|EEN71007.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|229309412|gb|EEN75399.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|306496292|gb|EFM65871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0411]
 gi|306501076|gb|EFM70383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0109]
 gi|306504080|gb|EFM73296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0860]
 gi|306507743|gb|EFM76872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2134]
 gi|306510499|gb|EFM79522.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0855]
 gi|306515424|gb|EFM83955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4248]
 gi|310631100|gb|EFQ14383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0102]
 gi|310633756|gb|EFQ17039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0635]
 gi|311292029|gb|EFQ70585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0470]
 gi|315025928|gb|EFT37860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2137]
 gi|315028966|gb|EFT40898.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4000]
 gi|315033240|gb|EFT45172.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0017]
 gi|315036725|gb|EFT48657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0027]
 gi|315143500|gb|EFT87516.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2141]
 gi|315147583|gb|EFT91599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4244]
 gi|315149321|gb|EFT93337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0012]
 gi|315152206|gb|EFT96222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0031]
 gi|315157011|gb|EFU01028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0043]
 gi|315159835|gb|EFU03852.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0312]
 gi|315161527|gb|EFU05544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0645]
 gi|315163617|gb|EFU07634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1302]
 gi|315167354|gb|EFU11371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1341]
 gi|315169563|gb|EFU13580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1342]
 gi|315574490|gb|EFU86681.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0309B]
 gi|315576777|gb|EFU88968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0630]
 gi|315581848|gb|EFU94039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0309A]
          Length = 468

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%)

Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152
           I  + +D+   I+ E   DE VRE   +   + IL+ L    +G+     T  V      
Sbjct: 85  ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K++   E +  + D+E+       SN  + G    G   L++  +K +          S+
Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270
            +    +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  I+T ++LFI  GAF               
Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                             H+  P DLL     PE  GR PV   L  L   D   ILT+ 
Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY++L+  +   L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ 
Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431

Query: 402 F 402
           F
Sbjct: 432 F 432


>gi|320106218|ref|YP_004181808.1| Sigma 54 interacting domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924739|gb|ADV81814.1| Sigma 54 interacting domain protein [Terriglobus saanensis SP1PR4]
          Length = 429

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+     +  EL   NILLVGPTG GK
Sbjct: 70  PHEVKAFLDEYVIGQEMTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA++   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 130 TLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 173



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 66/237 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 183 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTVV 242

Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309
           +T +ILFI  GAF                                            + P
Sbjct: 243 DTTNILFICGGAFVGLEKVIARRIGKKALGFKTQGDPDVIEGATPIRAQRDSELLRQAEP 302

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR PV   L  L+++    ILT   + ++ QY +L + EG+ + F+ 
Sbjct: 303 QDLLKYGLIPEFVGRLPVLGILDELDEAALIDILTRPRNAILKQYAKLFEFEGVKVTFSS 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           ++  A+A  A+N       +GAR L+ ++E ++ D+ ++  ++ + K + I AE V+
Sbjct: 363 EAAQAIAHEALNRK-----VGARGLRMILEELMLDLMYTVPTNKKLKELEITAEMVK 414


>gi|322375632|ref|ZP_08050144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
 gi|321279340|gb|EFX56381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
          Length = 410

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREETEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDEKSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F +D++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDDALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   +     GAR L++++E  + D+ F     +  KTV I  E V
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399


>gi|256823169|ref|YP_003147132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella
           koreensis DSM 16069]
 gi|256796708|gb|ACV27364.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella
           koreensis DSM 16069]
          Length = 422

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 4/115 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPA--DLRD-ELMPKNILLVGPTGV 64
           P+EI   L++Y+IGQ  AK+ +++A+ N ++R +  PA  + +D EL   NILL+GPTG 
Sbjct: 65  PQEIAEFLEQYVIGQDRAKKVLSVAVYNHYKRLESEPASSEHKDVELGKSNILLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAETLARMLEVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILF+  GAF                                       P DL    
Sbjct: 240 DTGNILFVCGGAFAGLEKIIQERTEKGGIGFGADVKQVKEGRAIGEMLKAVEPDDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   L+ L++     IL + ++ L  QY +L   E + L+F +D++ A+A
Sbjct: 300 LIPEFIGRLPIVTTLQELDEEALVRILIEPKNALTKQYSKLFSLENVDLEFRKDALVAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+   +     GAR L++++E +L D  ++   L+    V IDA  V+
Sbjct: 360 HKAMQRRT-----GARGLRSILEEILLDTMYNLPSLEGVSKVCIDAAVVK 404


>gi|78357262|ref|YP_388711.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123552156|sp|Q30Z80|CLPX_DESDG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78219667|gb|ABB39016.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
            SP EI + LD Y+IGQ  AK+ +++A+ N ++R      L DE  L   NILLVG +G 
Sbjct: 62  LSPAEIKARLDEYVIGQHTAKKILSVAVHNHYKRVFFAETLSDEVELEKSNILLVGSSGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 GKTLLAKTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 57/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GIV++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 177 GIVYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 236

Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADL----- 312
           +T +ILFI  GAF           H                          P DL     
Sbjct: 237 DTSNILFIMGGAFIGLDKIIEQRMHGGAMGFGVKVASKKETPLSDLLGNVHPNDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV  H+  L + D   IL + ++ L+ QY++L + + + L FT +++ A+A 
Sbjct: 297 IPEFIGRIPVITHVNELAEDDLVRILQEPKNALVRQYQKLFELDHVKLRFTSNALRAVAR 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            A+   +     GAR L+ V+E V+ +I F+
Sbjct: 357 QAIERKT-----GARGLRNVLESVMLEIMFN 382


>gi|258544427|ref|ZP_05704661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Cardiobacterium hominis ATCC 15826]
 gi|258520316|gb|EEV89175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Cardiobacterium hominis ATCC 15826]
          Length = 415

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD YIIGQ  AK+A+A+A+ N ++R    Q  AD   E++  NIL++G TG 
Sbjct: 62  TPSEIKAFLDDYIIGQHRAKKALAVAVYNHYKRLHLNQQKADDGVEIVKSNILMIGSTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA+    PF   + T  TE GYVG +VE I++ L+    N V  + R
Sbjct: 122 GKTLLAQTLAKCLDVPFAIADATALTEAGYVGEDVETIVQKLLMNCDNDVTRAER 176



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 59/216 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+  +V  + G          +
Sbjct: 177 GIIYIDEIDKIARKGENLSITRDVSGEGVQQALLKLVEGTVAAVPPQGGRKHPQQELIHV 236

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           NT +ILFI  GAF                    HV   A+                    
Sbjct: 237 NTTNILFICGGAFAGLEKLIAKRTEQGGIGFGAHVHSKAEADENNNRLLQQIEPEDLVKF 296

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L +L++     ILT+ ++ ++ Q++++   E + L+FT D++ A+
Sbjct: 297 GLIPEFVGRLPIIALLDTLDEDALIHILTEPKNAIVRQFEKIFGFENVALEFTPDALQAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           A  A+   +     GAR L++++E+ L D  F+  D
Sbjct: 357 AQKAITRKT-----GARGLRSIVEQTLLDTMFNLPD 387


>gi|111221350|ref|YP_712144.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia alni
           ACN14a]
 gi|123338856|sp|Q0RPH1|CLPX_FRAAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|111148882|emb|CAJ60561.1| ATPase, chaperone subunit of serine protease [Frankia alni ACN14a]
          Length = 432

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------ELMPKNILL 58
           PREI   LD Y++GQ+ AK+ +++A+ N ++R Q                 EL   NILL
Sbjct: 64  PREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSGGGGGAEGAKAEVELAKSNILL 123

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T ++LFI  GAF        SR                            P DLL    
Sbjct: 245 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASDVFGDIMPEDLLKYGM 304

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     ILT+ ++ L+ QYK L + + + LDFT D+++A+AD
Sbjct: 305 IPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VV+  E V  H+
Sbjct: 365 QAI-LRGT----GARGLRAIMEEVLLSVMYDIPSRKDVARVVVTREVVLEHV 411


>gi|227542943|ref|ZP_03972992.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181165|gb|EEI62137.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 418

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ +AK+ +++A+ N ++R +L     +D   EL   NILL+GPTG
Sbjct: 65  TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAA 171



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 57/228 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          
Sbjct: 180 HGIVYIDEIDKITRKGENVSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQELIQ 239

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           ++T +ILFIASGAF                                     +P DL    
Sbjct: 240 VDTSNILFIASGAFAGLEKVIQERVGKKSLGFGADIRSNEELENANILQKVQPEDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   +  L+K     +LT+ +++L+ QY+++   +   L FT+ ++ A+A
Sbjct: 300 LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFTDGALGAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           + A+   +     GAR L+ +ME +L  + +     +   V IDA  V
Sbjct: 360 EKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVV 402


>gi|227488330|ref|ZP_03918646.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091692|gb|EEI27004.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 418

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ +AK+ +++A+ N ++R +L     +D   EL   NILL+GPTG
Sbjct: 65  TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAA 171



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 57/228 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          
Sbjct: 180 HGIVYIDEIDKITRKGENVSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQELIQ 239

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           ++T +ILFIASGAF                                     +P DL    
Sbjct: 240 VDTSNILFIASGAFAGLEKVIQERVGKKSLGFGADIRSNEELENANILQKVQPEDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   +  L+K     +LT+ +++L+ QY+++   +   L FT+ ++ A+A
Sbjct: 300 LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFTDGALGAIA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           + A+   +     GAR L+ +ME +L  + +     +   V IDA  V
Sbjct: 360 EKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVV 402


>gi|183983779|ref|YP_001852070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           marinum M]
 gi|238690940|sp|B2HNG2|CLPX_MYCMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|183177105|gb|ACC42215.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium
           marinum M]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRCEAVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|163857102|ref|YP_001631400.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella petrii
           DSM 12804]
 gi|229889853|sp|A9IR50|CLPX_BORPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163260830|emb|CAP43132.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella petrii]
          Length = 432

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R    ++  D   EL   NI+L+GPTG 
Sbjct: 66  TPSEIKTFLDQYVIGQTLPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 159/376 (42%), Gaps = 102/376 (27%)

Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151
           I  + +D+  +I+RE    + R  +R +    +E +  LD  ++G+T       V     
Sbjct: 36  ICDECIDLCNDIIREEAQATARAAIRSELPTPSEIKTFLDQYVIGQTLPKRMLAVAVYNH 95

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K++R GEI   E+++         SN  + G    G   L++  ++++           
Sbjct: 96  YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258
                P +M D +  L +   V  D   +++      NY        I+++DE DKI  +
Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304
                I   VS EGVQ+ LL L+EG+  SV  + G          ++T +ILFI  GAF 
Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253

Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326
               V R                              P DL+     PE+ GR PV   L
Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+++    ILT+ +++LI Q+++L   EG  LD    ++ A+A  A+   +     GA
Sbjct: 314 DELDEAALVQILTEPKNSLIKQFQKLFAMEGAELDVRPGALKAIARKALKRKT-----GA 368

Query: 387 RRLQTVMERVLEDISF 402
           R L++++E  L D  +
Sbjct: 369 RGLRSIIEAALLDTMY 384


>gi|327389757|gb|EGE88102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA04375]
          Length = 401

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 169



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|322391568|ref|ZP_08065037.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
 gi|321145651|gb|EFX41043.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
          Length = 410

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   +     GAR L++++E  + D+ F     +  KTV I  E V
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399


>gi|54023302|ref|YP_117544.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardia farcinica
           IFM 10152]
 gi|61211421|sp|Q5Z061|CLPX_NOCFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54014810|dbj|BAD56180.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDSRGETVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIISDRTGHRGIGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTQDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385


>gi|55820660|ref|YP_139102.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMG 18311]
 gi|55822551|ref|YP_140992.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus CNRZ1066]
 gi|81820326|sp|Q5M0S4|CLPX_STRT1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81820490|sp|Q5M5B0|CLPX_STRT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|55736645|gb|AAV60287.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           LMG 18311]
 gi|55738536|gb|AAV62177.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           CNRZ1066]
 gi|312277987|gb|ADQ62644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           thermophilus ND03]
          Length = 408

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+E++  L+ Y++GQ   KRA+A+A+ N ++R        D   +L   NIL++GPTG G
Sbjct: 63  PKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 KTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D+++A+A  A
Sbjct: 297 EFIGRLPVLATLEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F    L++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKV 390


>gi|262276277|ref|ZP_06054086.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
 gi|262220085|gb|EEY71401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF---------HVSR---------------------------PADL--- 312
           +T  ILFI  GAF          V++                           P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVDQRVAKGSGIGFGAEVRSKDQEASLSDLFSKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L++ +G+ L+F +D++ A+
Sbjct: 301 GLIPEFIGRLPVTAILGELDEDALVQILREPKNALTKQYAALLELDGVELEFRDDALTAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           A  A+   +     GAR L++++E VL D  +     +  T VVID   ++
Sbjct: 361 AKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSSKGVTKVVIDESVIK 406


>gi|194333458|ref|YP_002015318.1| ATP-dependent protease ATP-binding subunit ClpX [Prosthecochloris
           aestuarii DSM 271]
 gi|238693326|sp|B4S620|CLPX_PROA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194311276|gb|ACF45671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prosthecochloris aestuarii DSM 271]
          Length = 439

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 6/118 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGP 61
            SP+ I+  L +Y++GQ+ A++++A+A+ N +RR   Q+   D  D+++    NILL+GP
Sbjct: 80  ISPKNIMESLGQYVVGQERARKSLAVAVYNHYRRIESQEWVRDAEDDVVIEKSNILLIGP 139

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           TG GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 140 TGTGKTLLAQTLANLLDVPFTIVDATSLTEAGYVGDDVETILTRLLQASDFNLERAER 197



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+ V             +  
Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLI 255

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           ++NT +ILFI  GAF          V++ +                              
Sbjct: 256 NVNTRNILFICGGAFEGLSKLIGRRVAKASMGFGSKVKAQQAEADPEILQKVTQDDLHEY 315

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+    R IL + ++ L+ QY++L + +G  L F ED++D +
Sbjct: 316 GLIPEFIGRLPVISTLDPLDAKALRNILVEPKNALVKQYQKLFEMDGCELVFDEDALDKV 375

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            ++A++  +     GAR L++V+E ++ DI F
Sbjct: 376 VEIALDRGT-----GARALRSVLENIMIDIMF 402


>gi|312140359|ref|YP_004007695.1| clp peptidase ATP-binding subunit clpx [Rhodococcus equi 103S]
 gi|325676031|ref|ZP_08155714.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
           ATCC 33707]
 gi|311889698|emb|CBH49015.1| Clp peptidase ATP-binding subunit ClpX [Rhodococcus equi 103S]
 gi|325553269|gb|EGD22948.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
           ATCC 33707]
          Length = 425

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDRGRDARGETVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L   +G+ L+F+ D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKDSLVTILSEPKNALVKQYTRLFDMDGVELEFSADALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A++  +     GAR L+ +ME VL  + +   S  D+ +  VV+ AE V
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVVTAETV 403


>gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 428

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 17/123 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI   LD Y+IGQ++AK+ +A+A+ N ++R      LR+           EL   NI
Sbjct: 66  TPHEIRHHLDDYVIGQENAKKVLAVAVYNHYKR------LRNVSNEGVNGEGVELGKSNI 119

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +
Sbjct: 120 LLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEK 179

Query: 117 SRR 119
           ++R
Sbjct: 180 AQR 182



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 243 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFSAEVKSESERATEGELLSQVEPEDLIKF 302

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L + EG+ L+F E+++ A+
Sbjct: 303 GLIPEFIGRLPVVATLGELSEEALIQILKEPKNALTKQYQALFELEGVNLEFREEALKAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A++  +     GAR L++++E  L +  +    ++  + +VID
Sbjct: 363 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMEHVEKIVID 403


>gi|239931289|ref|ZP_04688242.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439662|ref|ZP_06579052.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342557|gb|EFE69513.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 428

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKRELESKDQFEEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ V
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404


>gi|163786487|ref|ZP_02180935.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159878347|gb|EDP72403.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 410

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAFH-VSR--------------------------------PADL-----L 313
           NT+HILFIA GAF  + R                                P DL     +
Sbjct: 234 NTEHILFIAGGAFDGIERVITKRLNMQAIGYSSINSDDAIDNDNILQYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  H+  L+ +  R ILT+ ++ +I QYK+L   + +    TE +++ + + 
Sbjct: 294 PEIIGRLPVLTHMDPLDANTLRAILTEPKNAIIKQYKKLFAMDEVDFTITEGALNYVVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+        +GAR L+++ E +L +  F
Sbjct: 354 AIEYK-----LGARGLRSLCEEILTEAMF 377



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI + LD YIIGQ+  KR +++A+ N ++R  Q P+D   E+   NI++VG TG GKT
Sbjct: 62  PKEIKAFLDEYIIGQEYTKRVMSVAVYNHYKRLLQPPSDDDIEIQKSNIIMVGQTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164


>gi|240170928|ref|ZP_04749587.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           kansasii ATCC 12478]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRHEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|256375295|ref|YP_003098955.1| ATP-dependent protease ATP-binding subunit ClpX [Actinosynnema
           mirum DSM 43827]
 gi|255919598|gb|ACU35109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinosynnema
           mirum DSM 43827]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   LD+Y+IGQ +AKR +++A+ N ++R Q     R+      EL   NIL++GPT
Sbjct: 64  PAEIHDFLDQYVIGQSEAKRTLSVAVYNHYKRIQAGDRGREGRDDGVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T ++LFI +GAF                                    S P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIQDRIGKRGLGFGAEVRTKAEVDAADYFAESMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   + +L++     ILT+ ++ L+ QY++L + +G+ L+FT+ +++A+AD
Sbjct: 301 IPEFIGRLPMVASVTNLDQPSLVRILTEPKNALVKQYQKLFEMDGVELEFTKSALEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385


>gi|91793846|ref|YP_563497.1| ATP-dependent protease ATP-binding subunit [Shewanella
           denitrificans OS217]
 gi|123060778|sp|Q12LA2|CLPX_SHEDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91715848|gb|ABE55774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           denitrificans OS217]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 13/119 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R      LR+       EL   NILL+G
Sbjct: 67  TPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKR------LRNGTTKEGVELGKSNILLIG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++S    IL+  ++ L  QY  L + E + L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AKKAMSRKT-----GARGLRSIVEGILLDTMY 386


>gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 412

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 163



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKV 235

Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313
           +T  ILFI  GAF                              ++S       P DL+  
Sbjct: 236 DTSKILFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEEKENLSELFRQVEPDDLMKF 295

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L++     ILT  ++ L  QY+ L   E + L+FT +++ A+
Sbjct: 296 GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAM 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E VL D  +    ++  K V++D E +
Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLKKVIVDEETI 400


>gi|254514392|ref|ZP_05126453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR5-3]
 gi|219676635|gb|EED33000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR5-3]
          Length = 428

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQQ AK+ +++A+ N ++R +         EL   NILLVGPTG GK
Sbjct: 69  PEEINGILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSGDVELGKSNILLVGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADL---- 312
           +T  ILFI  GAF                      H                P DL    
Sbjct: 242 DTSSILFICGGAFAGLDKVIRDRSEKGGIGFGAEVHSKDAKRNVGEVLFDLEPEDLVQYG 301

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+      ILT+  ++L  QY +L + EG+ +DF ED + A+A
Sbjct: 302 LIPEFVGRLPVIATLEELDVPALVQILTEPRNSLTKQYSKLFEMEGVEIDFREDGLRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   +     GAR L++++E VL D  +S     +   VV+D   +R
Sbjct: 362 EKAMERKT-----GARGLRSILEGVLLDTMYSIPSRDDVAKVVVDESVIR 406


>gi|154148896|ref|YP_001406902.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804905|gb|ABS51912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           hominis ATCC BAA-381]
          Length = 411

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 2/116 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTG 63
           + +P+E++  L+RY+IGQ+ AK+A ++ + N ++R  +Q   D   EL   NILL+GPTG
Sbjct: 58  SITPQELMEVLNRYVIGQERAKKAFSVGVYNHYKRIFKQNEIDDDTELSKSNILLIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +
Sbjct: 118 SGKTLMAQTLAKFLEVPIAICDATSLTEAGYVGEDVENILTRLLQAAGGDVKKAEK 173



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 174 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 233

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILF+  GAF                                H+  P DL     +P
Sbjct: 234 DTTNILFVCGGAFDGLNEIINRRMGENILGFGQEKRSKKESQNLLHLVEPDDLVHFGIIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  +++     ILT+ ++ ++ QY++L   +G  L F +D+I  +A  A
Sbjct: 294 ELIGRLHVVATLNEIDEDAMIRILTEPKNAILKQYQKLFAIDGANLKFEDDAIAQVAKKA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME ++ DI F   +L    V+I  + V
Sbjct: 354 IERKT-----GARGLRSIMEDIMVDIMFDLPELAGYDVIITKDVV 393


>gi|297622837|ref|YP_003704271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera
           radiovictrix DSM 17093]
 gi|297164017|gb|ADI13728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera
           radiovictrix DSM 17093]
          Length = 398

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PRE+ ++LD Y++ Q+ AK+ +A+A+ N + R Q P     EL   NILL+GP+G GKT
Sbjct: 56  TPREVKAQLDAYVVEQEAAKKTLAVAVFNHYLRLQHP---DSELQKANILLLGPSGTGKT 112

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 113 LLAQTLARILQVPFAIADATTLTEAGYVGDDVENILVRLLQTA 155



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 53/206 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG  + V  + G         +I
Sbjct: 165 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGAVTYVPPQGGRKHPHQELVAI 224

Query: 292 NTDHILFIASGAFH-----------VSR-------------------PAD-----LLPEI 316
           +T +ILFI  GAF            VS+                   P D     L+PE+
Sbjct: 225 DTTNILFICGGAFEGLEDIIRNRVDVSKVGFNYDGEGDRGAVTAQVIPEDLVRFGLIPEL 284

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L+ L+      +LT  ++ L+ QY+EL + EG+ L F+E ++  +A  A  
Sbjct: 285 IGRLAVTATLEELSLEALVDVLTQPKNALVKQYRELFRLEGVELTFSEGALYEVARRAKA 344

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402
           L +     GAR L++V+E+ L ++ F
Sbjct: 345 LGT-----GARGLRSVLEKTLLELMF 365


>gi|294812616|ref|ZP_06771259.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325215|gb|EFG06858.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 464

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 101 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLGP 160

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 161 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 209



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 219 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 278

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 279 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 338

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 339 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 398

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 399 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 445


>gi|206895573|ref|YP_002247154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738190|gb|ACI17268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 417

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPAD-LRDELMPKNILLVGPTGV 64
           +P++I S LD Y++GQ+ AKR V++A+ N ++R   +L  D    EL   NIL +GPTG 
Sbjct: 60  TPQQIKSFLDNYVVGQEKAKRIVSVAVYNHYKRVRSKLRGDSFGTELGKSNILFIGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 GKTYVAQNLAKFLNVPFSISDATSLTEAGYVGEDVENILLRLIQAA 165



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 55/240 (22%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++ 
Sbjct: 173 QYGIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFV 232

Query: 290 SINTDHILFIASGAFH-------------------------------VSRPADLL----- 313
            I+T  ILF+  GAF                                +  P DLL     
Sbjct: 233 QIDTSDILFMVGGAFEGLEDIIRQRLGKRTVGFMADPKALDSDEVLDMVIPEDLLKFGMI 292

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GRFPV      L+  D   ILT  +++L+ QYK L   +G+ L+FT+ +++A+A  
Sbjct: 293 PEFVGRFPVVATFHKLSTKDLVDILTRPKNSLVKQYKALFAMDGVELEFTDKALEAIAQE 352

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDM 432
           A         +GAR L+ ++E  L D+ F   +  E K V+I ++ ++     F +E D+
Sbjct: 353 AEKRG-----MGARGLRAILEETLMDLMFEVPEKPEIKKVIITSKCIQGEEPVFLTELDL 407


>gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus parainfluenzae T3T1]
          Length = 412

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 163



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKV 235

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311
           +T  ILFI  GAF                      V +  D                   
Sbjct: 236 DTSKILFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEDKENLSELFRQVEPDDLMKF 295

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L++     ILT  ++ L  QY+ L   E + L+FT +++ A+
Sbjct: 296 GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAM 355

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E VL D  +    ++  + V++D E +
Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETI 400


>gi|315604694|ref|ZP_07879757.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313706|gb|EFU61760.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 419

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65
           PREI   L+ ++IGQ  AKRA+++A+ N ++R   +   +  D L  K NILL+GPTG G
Sbjct: 65  PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSRDAGNAEDMLGTKSNILLLGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +
Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                         S   DL              +P
Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSASEMGDLYEAVSAEDLHKFGMIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+    K L + D   +LT+  ++L+ QY+ L   +GI L+FT +++ A+A  A
Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFDLDGIDLEFTHEALLAIAARA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
            N   T    GAR L ++ME  L D+ F
Sbjct: 359 -NERKT----GARGLSSIMEATLSDLMF 381


>gi|332830358|gb|EGK02986.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 411

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 56/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAV 234

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           +T +ILFI  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFICGGAFDGIERKIAQRLNTKVVGYASSLKNAEVDRENLLQYVAPQDLKSYGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L +L++S  R ILT+ ++++I QY +L   + + L F ED  + + D 
Sbjct: 295 PEIIGRLPILTYLDALDRSALRRILTEPKNSIIKQYIKLFNMDDVDLTFDEDVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
           AV        +GAR L++++E ++ D  F+    ++  + I  +Y
Sbjct: 355 AVEYK-----LGARGLRSIVENIMMDAMFTIPSTKQTQLHITKDY 394



 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 4/104 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P++I   LD YIIGQ +AKR +A+A+ N ++R  Q+   D+  E+   NI+LVGPTG GK
Sbjct: 64  PKKIKEYLDGYIIGQDNAKRYLAVAVYNHYKRILQEKNDDI--EIEKSNIILVGPTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  +
Sbjct: 122 TLLARTIAKMLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAS 165


>gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
 gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
          Length = 433

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 63/104 (60%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ +AK+ +++A+ N ++R         EL   NIL++GPTG GK
Sbjct: 65  LKPKEIKEFLDEYVVGQDEAKKVLSVAVYNHYKRITSKGTQEVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 125 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKIIQSA 168



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 177 YGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 236

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                      P DL    
Sbjct: 237 IDTTNILFICGGAFDGLEKIIENRLGAGSIGFNAEIVDKQNQDIDELLKQVMPQDLTKFG 296

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V L+SL++     IL++ ++ +I QY+     +G+ L+FTE+++ A+A
Sbjct: 297 LIPEFIGRVPVTVALRSLSEDALVKILSEPKNAIIKQYQAFFDLDGVKLEFTEEALTAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV   +     GAR L+++ME ++ DI +
Sbjct: 357 HLAVERKT-----GARGLRSIMESIMMDIMY 382


>gi|224437060|ref|ZP_03658041.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           cinaedi CCUG 18818]
          Length = 427

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD-ELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ  AK+  ++A+ N ++R     +Q+   LR+ EL   NILL+GP
Sbjct: 71  SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 130

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +
Sbjct: 131 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEK 188



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 189 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 248

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314
           +T  ILF+  GAF                  H  +              P DL+     P
Sbjct: 249 DTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDDLISYGLIP 308

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  + K     ILT  ++ L+ QY+++ + +G  L F + +I+A+A++A
Sbjct: 309 ELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGAIEAIAELA 368

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +     GAR L+ +ME  + D+ +   +L+   + I  E +
Sbjct: 369 ISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECI 408


>gi|153955959|ref|YP_001396724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           kluyveri DSM 555]
 gi|189082490|sp|A5N2K7|CLPX_CLOK5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146348817|gb|EDK35353.1| ClpX [Clostridium kluyveri DSM 555]
          Length = 430

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 57/223 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  
Sbjct: 175 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234

Query: 291 INTDHILFIASGAF-----------HVSR-----------------------PADLL--- 313
           INT +ILFI  GAF            VS                        P DLL   
Sbjct: 235 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMPGDLLKFG 294

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L++L+++    IL + ++ L+ QYK+L + + + L+F +++++A+A
Sbjct: 295 LIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           D A+  N+     GAR L+ ++E  ++D+ F     +E   VI
Sbjct: 355 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVI 392



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ+D+K+++++A+ N ++R      ++   EL   NILL+GPTG GK
Sbjct: 63  PVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166


>gi|291165525|gb|EFE27575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Filifactor
           alocis ATCC 35896]
          Length = 424

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61
             P EI + LD Y+IGQ++AK+ +A+A+ N ++R       P + ++ EL   N++++GP
Sbjct: 61  LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAA 169



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           GI+++DE DKI AR + N      VS EGVQ+ LL ++E +  +             +  
Sbjct: 179 GIIYIDEIDKI-ARKTDNPSLTRDVSGEGVQQALLKILESTKANVPPQGGRKHPHQDFLQ 237

Query: 291 INTDHILFIASGAF---------------------HVSRPAD------------------ 311
           I+T +ILFI  GAF                     +  +  D                  
Sbjct: 238 IDTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSNISFYEKVESQDLLKYG 297

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE   R PV V L++L++     ILT+ ++ L+ QYK+L + +G+ L+  ED++ A+A
Sbjct: 298 LIPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFELDGVELEVEEDALIAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A++       IGAR L++++E ++ DI +
Sbjct: 358 KQAIDRK-----IGARGLRSILENIMIDIMY 383


>gi|219856301|ref|YP_002473423.1| hypothetical protein CKR_2958 [Clostridium kluyveri NBRC 12016]
 gi|254763842|sp|B9E684|CLPX_CLOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219570025|dbj|BAH08009.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 432

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 57/223 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  
Sbjct: 177 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 236

Query: 291 INTDHILFIASGAF-----------HVSR-----------------------PADLL--- 313
           INT +ILFI  GAF            VS                        P DLL   
Sbjct: 237 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMPGDLLKFG 296

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+ V L++L+++    IL + ++ L+ QYK+L + + + L+F +++++A+A
Sbjct: 297 LIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           D A+  N+     GAR L+ ++E  ++D+ F     +E   VI
Sbjct: 357 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVI 394



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ+D+K+++++A+ N ++R      ++   EL   NILL+GPTG GK
Sbjct: 65  PVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 TLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168


>gi|292670225|ref|ZP_06603651.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
 gi|292648177|gb|EFF66149.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
          Length = 421

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ +AK+++++A+ N ++R     +  +  EL   NIL++GPTG GK
Sbjct: 64  PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGQNKNEDVELRKSNILMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176



 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQI 236

Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DL+    
Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAQVRSKKRVTVGALLSKVIPEDLMKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL++     ILT+ ++ L+ Q+++L++ +G+ L F +D++  +A 
Sbjct: 297 IPEFIGRLPVVVTLNSLDEKALVRILTEPKNALVKQFQKLLELDGVRLTFEDDALRLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            A+   +     GAR L++++E ++ ++ +    +Q  T  
Sbjct: 357 EALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTAC 392


>gi|238926239|ref|ZP_04657999.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885919|gb|EEQ49557.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 421

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ +AK+++++A+ N ++R        +  EL   N+L++GPTG GK
Sbjct: 64  PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T +ILFI  G+F                                 +S+  P DL+    
Sbjct: 237 DTTNILFICGGSFDGLEEIIESRLGKKQMGFGAEVRSRRRVKIGASLSKIIPEDLMKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL++     ILT+ ++ LI Q+++L++ +G+ L F ++++  +A 
Sbjct: 297 IPEFIGRLPVVVTLNSLDEDALVRILTEPKNALIKQFQKLLELDGVRLTFEDEALHLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            A+   +     GAR L++++E ++ ++ +    +   T  
Sbjct: 357 EALTHKT-----GARGLRSIVENIMRNVMYEVPSIHGVTAC 392


>gi|221633184|ref|YP_002522409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomicrobium roseum DSM 5159]
 gi|221156856|gb|ACM05983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomicrobium roseum DSM 5159]
          Length = 423

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 67/103 (65%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+++  +L++Y++GQ+ AK+ +++A+ N ++R     D   EL   NILL+GPTG GKT
Sbjct: 66  TPKQLYEQLNQYVVGQERAKKVLSVAVYNHYKRIIFGEDSDVELQKSNILLIGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 LLAQTLAKLLDVPFSISDATTLTEAGYVGEDVENILLRLIQAA 168



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 56/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTIANVPPHGGRKHPHQEYIQI 237

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                 H   P DLL     
Sbjct: 238 DTRNILFICGGAFEGLDEIVRRRIGKDSTIGFGKSARQDGRVENVLHQVIPDDLLKFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L   D   IL + ++ ++ QY+++   + + L FT D++ A AD+
Sbjct: 298 PEFIGRLPVVAALDPLTHDDLVRILVEPKNAIVKQYQKIFAMDNVELIFTPDALHATADL 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A    +     GAR L+T +E VL D+ +    LQ
Sbjct: 358 AERRGT-----GARGLRTTLEEVLLDVMYELPSLQ 387


>gi|149275731|ref|ZP_01881876.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39]
 gi|149233159|gb|EDM38533.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39]
          Length = 392

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI + +D+Y+IGQ DAK+ +++A+ N ++R  QQ+  +   E+   NI+LVG TG 
Sbjct: 41  LKPAEIKAHIDQYVIGQDDAKKVLSVAVYNHYKRLSQQVNKEDEVEIEKSNIMLVGETGT 100

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 101 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAA 146



 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 59/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GIV++DE DK VAR S N      VS EGVQ+ LL ++EG+ V+            K   
Sbjct: 156 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIP 214

Query: 291 INTDHILFIASGAFH-VSR--------------------------------PADL----- 312
           +NT++ILFI  GAF  + R                                P DL     
Sbjct: 215 VNTNNILFICGGAFDGIERKIANRLRTQAVGYKVKKDDVDLDLKNLYKYITPQDLKSFGL 274

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  HL  L+KS  R ILT+ +++L  QY +L + EG+ L F ++ +D + D
Sbjct: 275 IPELIGRVPVLTHLNPLDKSALRNILTEPKNSLFRQYVKLFEFEGVELVFEDEVLDFIVD 334

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEY 418
            A+        +GAR L+++ E ++ D  F   SD   K +VI  +Y
Sbjct: 335 KAMEYK-----LGARGLRSICEAIMLDAMFDIPSDPGIKELVITLDY 376


>gi|116627469|ref|YP_820088.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
 gi|122267933|sp|Q03LN0|CLPX_STRTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116100746|gb|ABJ65892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
          Length = 408

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+E++  L+ Y++GQ   KRA+A+A+ N ++R        D   +L   NIL++GPTG G
Sbjct: 63  PKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 KTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D+++A+A  A
Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F    L++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKV 390


>gi|46198559|ref|YP_004226.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus
           HB27]
 gi|61211543|sp|Q72L14|CLPX_THET2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46196181|gb|AAS80599.1| ATP-dependent clp protease ATP-binding subunit clpX [Thermus
           thermophilus HB27]
          Length = 399

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT 
Sbjct: 60  PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKANILLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNA 158



 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 53/222 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 168 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIP 226

Query: 291 INTDHILFIASGAFH---------VSR-------------------PADL-----LPEIQ 317
           +NT +ILFI  GAF          V +                   P DL     +PE  
Sbjct: 227 VNTKNILFILGGAFEGLENIVKARVGKTTIGFTGERREREEPLEVIPEDLIKFGMIPEFV 286

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L  L + D   ILT+ ++ L+ QY+EL + EGI L FT+ ++  +A  A+  
Sbjct: 287 GRAPLIVQLHPLGEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKR 346

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +     GAR L+ ++E+ + D+ F A     K +V D  ++
Sbjct: 347 GT-----GARGLRAILEKAMVDLMFEAPGSGVKEIVFDLPHL 383


>gi|42520203|ref|NP_966118.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|61211556|sp|Q73I60|CLPX_WOLPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|42409941|gb|AAS14052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 425

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIVF+DE DKI  +  G  I   VS EGVQ+ LL ++EG+               ++  +
Sbjct: 182 GIVFIDEIDKITRKSEGTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  H  +P DL+    
Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+  D   +LT+  + LI QYK L+    + L+F++++I A+A 
Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
            A++  +     GAR L+ ++E +L DI +++ +   +  T+VI  + V L
Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVITKKMVEL 407



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQKHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A  ++V+  R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181


>gi|114563761|ref|YP_751274.1| ATP-dependent protease ATP-binding subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299289|sp|Q07ZX9|CLPX_SHEFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114335054|gb|ABI72436.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           frigidimarina NCIMB 400]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+   LD Y+IGQ  AK+ +A+A+ N ++R +  A ++D  EL   NILL+GPTG G
Sbjct: 67  TPHELRKHLDDYVIGQDQAKKVLAVAVYNHYKRLRNGA-IKDGVELGKSNILLLGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLL 167



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 59/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEADKATISQILSQVEPGDLVKF 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL++ ++ L  QY  L + E + L+F +D++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNALTKQYSALFEMEDVELEFRDDALQAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A  A++  +     GAR L++++E +L D  +     Q
Sbjct: 360 AQKAMSRKT-----GARGLRSIVESILLDTMYDIPSTQ 392


>gi|323495055|ref|ZP_08100144.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
 gi|323310712|gb|EGA63887.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
          Length = 427

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 14/107 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PR+I + LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+G
Sbjct: 68  PRDIRAHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFMQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELENSELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDESVIK 406


>gi|256824762|ref|YP_003148722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus
           sedentarius DSM 20547]
 gi|256688155|gb|ACV05957.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus
           sedentarius DSM 20547]
          Length = 422

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +PREI + L+ Y++GQ +AKRA+A+A+ N ++R   ++       E+   NIL++GPTG 
Sbjct: 63  TPREIHAFLETYVVGQDEAKRALAVAVYNHYKRVDAERSTDPEAPEVAKSNILMIGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GKTYLAQTLAKLLQVPFAIADATALTEAGYVGEDVENILVKLIQAA 168



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFVQI 237

Query: 292 NTDHILFIASGAF--------------------HVS------------RPADL-----LP 314
           +T +ILFI  GAF                    ++S            RP DL     +P
Sbjct: 238 DTRNILFIVGGAFAGLDDIVAAREGKGGLGFGANLSVRREEGDLLRQIRPEDLVNFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L+      ILT   + L+ QY+ L + +G+ L+FTED++ A+A+ A
Sbjct: 298 EFIGRVPVVAAVSPLDADALVDILTGPRNALVRQYQHLFRLDGVELEFTEDAVRAVAEQA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           + L  T    GAR L+ +ME VL+ + F   SD + + VV+ AE V
Sbjct: 358 M-LRRT----GARGLRAIMEEVLQPVMFDVPSDDRIERVVVTAEVV 398


>gi|256371560|ref|YP_003109384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008144|gb|ACU53711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 419

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 65/102 (63%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI+  L+ Y++GQ+ AK+ +++A+ N ++R +  A    EL   N+LL+GPTG GKT 
Sbjct: 66  PAEIMEFLNAYVVGQESAKKILSVAVYNHYKRIRSGAKDDVELQKSNVLLLGPTGCGKTL 125

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 LAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 177 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 236

Query: 292 NTDHILFIASGAF------------HVS--------------------RPADLL-----P 314
           +T +ILFI  GAF            H                      +P DLL     P
Sbjct: 237 DTSNILFICGGAFVGLDEIVAARLGHRGIGFTGSLAERDGGENILARVQPEDLLRFGLLP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   +++L++     ILT+ ++ L+ QY++++  +G+ L+ T  +++A+AD+A
Sbjct: 297 EFIGRLPIVGTIENLDRDALISILTEPKNALVKQYQKVLAMDGVELEITPSALEAIADLA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
           + L  T    GAR L+ +ME VL D+ F   S SD+Q    VID + V  H
Sbjct: 357 L-LRGT----GARGLKAIMEEVLLDVMFDLPSRSDVQR--CVIDRDVVLEH 400


>gi|237807856|ref|YP_002892296.1| ATP-dependent protease ATP-binding subunit ClpX [Tolumonas auensis
           DSM 9187]
 gi|259491271|sp|C4LDB4|CLPX_TOLAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237500117|gb|ACQ92710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tolumonas
           auensis DSM 9187]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 68  TPHKIRAHLDDYVIGQDLAKKVLAVAVYNHYKRLRSGSSADGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 128 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 180



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRTAQGAGIGFNAEVKSKDKKVTLSESFAKVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    IL + ++ L  QY+ L K EG  L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVVATLTELDENALIQILVEPKNALTKQYQALFKLEGAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A  A+   +     GAR L++++E VL D  +    ++  + V+  E+V
Sbjct: 361 AHKAMERKT-----GARGLRSIVEGVLLDTMYDLPSVENVSKVVVDEHV 404


>gi|111658475|ref|ZP_01409148.1| hypothetical protein SpneT_02000375 [Streptococcus pneumoniae
           TIGR4]
          Length = 372

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 26  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 84

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 85  SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 140



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 141 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 200

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 201 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 260

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 261 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 320

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 321 IERKT-----GARGLRSIIEETMLDVMF 343


>gi|198283160|ref|YP_002219481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666382|ref|YP_002425389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226706572|sp|B7J791|CLPX_ACIF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706573|sp|B5EQ29|CLPX_ACIF5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|198247681|gb|ACH83274.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518595|gb|ACK79181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 423

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+ +++A+ N ++R +    D   EL   NILL+GPTG GKT
Sbjct: 66  PMEIRKTLDDYVIGQDVAKKVLSVAVYNHYKRLEHGGKDNEVELDKSNILLIGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 LLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLL 165



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 178 GIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 237

Query: 292 NTDHILFIASGAF-----HVS------------------------------RPADL---- 312
           +T HILFI  GAF      VS                               P DL    
Sbjct: 238 DTRHILFICGGAFAGLEKSVSARLEKGGMGFNAPLKRRDKEATAAMLMQNLEPEDLVRYG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   L+ L++     ILTD ++ L+ QY++L   EG+ L+F  +++ A+A
Sbjct: 298 LIPEFVGRLPILALLEELDEEALISILTDPKNALVKQYQKLFALEGVTLEFRTEALRAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L++++E++L D  +
Sbjct: 358 KKALARKT-----GARGLRSILEQILLDTMY 383


>gi|169628673|ref|YP_001702322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           abscessus ATCC 19977]
 gi|238688926|sp|B1MMV6|CLPX_MYCA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169240640|emb|CAM61668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           abscessus]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AK+ +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIRDFLENYVIGQDTAKKTLAVAVYNHYKRIQAGDKARDARGETVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T ++LFI +GAF                     V   AD                   L
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVKSKADIDTTDHFAEVMPEDLIKFGL 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L++     IL++ ++ L+ QY  L + +G+ L+F++D+++A+AD
Sbjct: 301 IPEFIGRLPIVASVTNLDRESLIKILSEPKNALVKQYTRLFEMDGVELEFSQDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL+ + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLQPVMY 385


>gi|111018379|ref|YP_701351.1| ATP-dependent protease ATP-binding subunit [Rhodococcus jostii
           RHA1]
 gi|226360500|ref|YP_002778278.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodococcus opacus
           B4]
 gi|123145276|sp|Q0SGZ3|CLPX_RHOSR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763859|sp|C1AVQ3|CLPX_RHOOB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110817909|gb|ABG93193.1| ATP-dependent Clp protease ATP-binding subunit: ClpX [Rhodococcus
           jostii RHA1]
 gi|226238985|dbj|BAH49333.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           opacus B4]
          Length = 426

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIRDFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L   +G+ L+FT D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A+ L  T    GAR L+ +ME VL  + +   S  D+++  VV+ AE V
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVSAETV 403


>gi|87201066|ref|YP_498323.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123488135|sp|Q2G3T4|CLPX_NOVAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|87136747|gb|ABD27489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 418

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I   L+ Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 66  TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGDVELSKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 62/232 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 177 QHGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313
            ++T +ILFI  GAF                    HV+               P DLL  
Sbjct: 237 QVDTTNILFICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRKVGELLQKAEPEDLLKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+      IL + ++ L+ QY +L + E + L FT+D+++A+
Sbjct: 297 GLIPEFVGRLPVIATLNDLDIEALVKILKEPKNALVKQYAKLFELEDVTLTFTDDALEAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A  A+   +     GAR L++++E +L D  F   + SD+ E  +V+D + V
Sbjct: 357 AKKAIERKT-----GARGLRSIVEGLLLDTMFDVPTESDIAE--IVVDKDVV 401


>gi|325261873|ref|ZP_08128611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
 gi|324033327|gb|EGB94604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
          Length = 486

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 69/112 (61%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I ++LD Y++GQ+ AK+A+++A+ N ++R    +    E+   N+L++GPTG GKT
Sbjct: 135 APHKIKAQLDEYVVGQEYAKKAMSVAVYNHYKRVATDSMDEIEIEKSNMLMIGPTGSGKT 194

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  + R
Sbjct: 195 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNEVERAER 246



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ LL L+EGS V    G           ++NT
Sbjct: 247 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLATVNT 306

Query: 294 DHILFIASGAF------------HVS---------------------------RPADLLP 314
            +ILFI  GAF            H +                           R   ++P
Sbjct: 307 KNILFICGGAFPDLEDIIKERLSHKTSMGFNAELKDKYEKDKDILSKVTMEDLRTFGMIP 366

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL +  + ++ QYK+L+  + + L+F E +++A+A+ A
Sbjct: 367 EFIGRLPIIFTLKGLDKEMLVQILKEPRNAILKQYKKLLALDEVNLEFDEGALEAIAEKA 426

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +  N+     GAR L+ ++E  + DI +
Sbjct: 427 MKKNT-----GARALRAIIEEFMLDIMY 449


>gi|313831241|gb|EFS68955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL007PA1]
          Length = 429

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKTENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|217076754|ref|YP_002334470.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho
           africanus TCF52B]
 gi|217036607|gb|ACJ75129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho
           africanus TCF52B]
          Length = 407

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I +ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   N++L+GPTG GKT
Sbjct: 59  PSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSDIDFDDVEIEKSNVILIGPTGSGKT 118

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            ++R LA++   PF   + T  TE GYVG +VE +I  L++V
Sbjct: 119 LLARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEV 160



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 61/228 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++ 
Sbjct: 169 QYGIIYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFL 228

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFI  GAF                                   HV+ P DL  
Sbjct: 229 KVDTSNILFIVGGAFDGIEEIIKRRIQSSALGFNAPVKSKKDMRLGEILSHVT-PEDLVQ 287

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L+ L + D   ILT+ ++ ++ QYK+L   + + L+ TE+++ A
Sbjct: 288 YGLIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLLDNVELEVTEEALRA 347

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVID 415
           ++  A+   +     GAR L++V E V+ D  F   DL   EK +V +
Sbjct: 348 ISRKALERGT-----GARALKSVFEEVMIDAMFELPDLNNIEKVIVTE 390


>gi|254480379|ref|ZP_05093626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2148]
 gi|214038962|gb|EEB79622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2148]
          Length = 432

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P+EI   LD Y+IGQ+ AK+ +++A+ N ++R    Q        EL   NILLVGPTG 
Sbjct: 70  PQEINGILDEYVIGQKRAKKVLSVAVYNHYKRLRHAQSQTRGEEVELGKSNILLVGPTGS 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 130 GKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 172



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 185 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 244

Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312
           +T +ILFI  GAF    +V R                               P DL    
Sbjct: 245 DTSNILFICGGAFAGLDNVIRNRSEKRGIGFGAEVKSKDETSNIGELLFELEPEDLVQYG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+      ILT+ +++L  QY +L + EG+ +DF ED + A+A
Sbjct: 305 LIPEFVGRLPVIATLEELDAEALVQILTEPKNSLTKQYSKLFEMEGVEVDFREDGLHAVA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   +     GAR L++++E +L D  ++     +   VVID   +R
Sbjct: 365 EKAMERKT-----GARGLRSILEGILLDSMYNIPSRDDVSKVVIDESVIR 409


>gi|1296452|emb|CAA64618.1| ClpX protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 420

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++  +A  
Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395


>gi|55980585|ref|YP_143882.1| ATP-dependent protease ATP-binding subunit ClpX [Thermus
           thermophilus HB8]
 gi|81821887|sp|Q5SKM7|CLPX_THET8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|55771998|dbj|BAD70439.1| 'ATP-dependent protease Clp, ATPase subunit ClpX [Thermus
           thermophilus HB8]
          Length = 399

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT 
Sbjct: 60  PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKANILLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNA 158



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 53/222 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 168 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIP 226

Query: 291 INTDHILFIASGAFH---------VSR-------------------PADL-----LPEIQ 317
           +NT +ILFI  GAF          V +                   P DL     +PE  
Sbjct: 227 VNTKNILFILGGAFEGLENIVKARVGKTTIGFTGGRREREEPLEVIPEDLIKFGMIPEFV 286

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L  L + D   ILT+ ++ L+ QY+EL + EGI L FT+ ++  +A  A+  
Sbjct: 287 GRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKR 346

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +     GAR L+ ++E+ + D+ F A     + +V D  ++
Sbjct: 347 GT-----GARGLRAILEKAMVDLMFEAPGSGVREIVFDLPHL 383


>gi|289426538|ref|ZP_06428281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289428633|ref|ZP_06430316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|295131120|ref|YP_003581783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|289153266|gb|EFD01984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289158031|gb|EFD06251.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|291376588|gb|ADE00443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|313763510|gb|EFS34874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA1]
 gi|313773447|gb|EFS39413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL074PA1]
 gi|313793900|gb|EFS41924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA1]
 gi|313801290|gb|EFS42541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA2]
 gi|313808031|gb|EFS46512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA2]
 gi|313811500|gb|EFS49214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA1]
 gi|313816692|gb|EFS54406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA1]
 gi|313819597|gb|EFS57311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA2]
 gi|313822078|gb|EFS59792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA1]
 gi|313823688|gb|EFS61402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA2]
 gi|313826012|gb|EFS63726.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA1]
 gi|313829480|gb|EFS67194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA2]
 gi|313834853|gb|EFS72567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL056PA1]
 gi|313839987|gb|EFS77701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL086PA1]
 gi|314914810|gb|EFS78641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA4]
 gi|314920717|gb|EFS84548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA3]
 gi|314924728|gb|EFS88559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA3]
 gi|314930597|gb|EFS94428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL067PA1]
 gi|314954448|gb|EFS98854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA1]
 gi|314957525|gb|EFT01628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA1]
 gi|314961992|gb|EFT06093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA2]
 gi|314963745|gb|EFT07845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA1]
 gi|314974117|gb|EFT18213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA1]
 gi|314976593|gb|EFT20688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL045PA1]
 gi|314978952|gb|EFT23046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA2]
 gi|314984412|gb|EFT28504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA1]
 gi|314990962|gb|EFT35053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA3]
 gi|315079594|gb|EFT51587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA2]
 gi|315081177|gb|EFT53153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL078PA1]
 gi|315083640|gb|EFT55616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA2]
 gi|315087059|gb|EFT59035.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA3]
 gi|315089234|gb|EFT61210.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA1]
 gi|315095256|gb|EFT67232.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL038PA1]
 gi|315099138|gb|EFT71114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA2]
 gi|315100379|gb|EFT72355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA1]
 gi|327328481|gb|EGE70243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA2]
 gi|327329653|gb|EGE71409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA3]
 gi|327444268|gb|EGE90922.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA2]
 gi|327444852|gb|EGE91506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA1]
 gi|327446338|gb|EGE92992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA2]
 gi|327452074|gb|EGE98728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL092PA1]
 gi|327454889|gb|EGF01544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA3]
 gi|327457825|gb|EGF04480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA2]
 gi|328752327|gb|EGF65943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL020PA1]
 gi|328755277|gb|EGF68893.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA1]
 gi|328758242|gb|EGF71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA2]
 gi|328760010|gb|EGF73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL099PA1]
 gi|332675997|gb|AEE72813.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Propionibacterium acnes 266]
          Length = 429

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|315108936|gb|EFT80912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA2]
          Length = 429

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 59/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DK VAR +GN      VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 185 GIVYIDEIDK-VARKAGNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQ 243

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T ++LFI  GAF                                   + RP DL    
Sbjct: 244 IDTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFG 303

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+A
Sbjct: 304 LIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           D AV   +     GAR L+ ++E  L D+ F
Sbjct: 364 DKAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|312873980|ref|ZP_07734016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090529|gb|EFQ48937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
          Length = 429

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 299 EFIGRVPVITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 65  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169


>gi|262280903|ref|ZP_06058686.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
 gi|262257803|gb|EEY76538.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
          Length = 437

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L+++ME VL
Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378


>gi|255658240|ref|ZP_05403649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
 gi|260849550|gb|EEX69557.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
          Length = 436

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P++I + LD+Y+IGQ +AK+ +++A+ N ++R    Q  P +   EL   NIL++GPTG 
Sbjct: 64  PKDIRAILDQYVIGQDEAKKTLSVAVYNHYKRINMGQGKPGE-DVELSKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 GKTLLAQSLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVEKAER 177



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQELIQI 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313
           +T +ILFI  GAF        SR                            P DLL    
Sbjct: 238 DTTNILFICGGAFDGIEKIIESRLGQKQMGFGAPIKSKRQRNIGDTLRKVLPEDLLKSGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L +L++     ILT  ++ L+ QY++L++ +G+ L F +D++  +A 
Sbjct: 298 IPEFIGRLPVVVTLDALDEEALVNILTKPKNALVKQYQKLLELDGVKLTFDDDALRQIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            A+   +     GAR L++++E ++ ++ +    ++  T  
Sbjct: 358 EALKRKT-----GARGLRSIIEGIMRNVMYDVPSIEGVTAC 393


>gi|50843045|ref|YP_056272.1| ATP-dependent protease ATP-binding subunit [Propionibacterium acnes
           KPA171202]
 gi|282854722|ref|ZP_06264057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|61211462|sp|Q6A7F1|CLPX_PROAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50840647|gb|AAT83314.1| ATP dependent Clp protease ATP binding subunit [Propionibacterium
           acnes KPA171202]
 gi|282582304|gb|EFB87686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|314923823|gb|EFS87654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL001PA1]
 gi|314966163|gb|EFT10262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA2]
 gi|314982028|gb|EFT26121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA3]
 gi|315090842|gb|EFT62818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA4]
 gi|315095054|gb|EFT67030.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL060PA1]
 gi|315104286|gb|EFT76262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA2]
 gi|315106806|gb|EFT78782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA1]
 gi|327328167|gb|EGE69936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL103PA1]
          Length = 429

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE ++ A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALGAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|313143532|ref|ZP_07805725.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter
           cinaedi CCUG 18818]
 gi|313128563|gb|EFR46180.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter
           cinaedi CCUG 18818]
          Length = 424

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD-ELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ  AK+  ++A+ N ++R     +Q+   LR+ EL   NILL+GP
Sbjct: 68  SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 127

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +
Sbjct: 128 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEK 185



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 186 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 245

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314
           +T  ILF+  GAF                  H  +              P DL+     P
Sbjct: 246 DTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDDLISYGLIP 305

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  + K     ILT  ++ L+ QY+++ + +G  L F + +I+A+A++A
Sbjct: 306 ELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGAIEAIAELA 365

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +     GAR L+ +ME  + D+ +   +L+   + I  E +
Sbjct: 366 ISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECI 405


>gi|268611240|ref|ZP_06144967.1| ATP-dependent protease ATP-binding subunit ClpX [Ruminococcus
           flavefaciens FD-1]
          Length = 435

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
             P EI   LD Y+IGQ +AK+++A+A+ N ++R   Q+   +   +L   N+LL+GPTG
Sbjct: 68  LKPVEIKEYLDEYVIGQDEAKKSLAVAVYNHYKRITAQEQKDEDGIDLQKSNVLLLGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 128 VGKTFLAQTLAKLLNVPFAIADATTITEAGYVGDDVENVLLRLIQAA 174



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 65/246 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 184 GIIYIDEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEVIQI 243

Query: 292 NTDHILFIASGAF-----HVSR---------------------------PADLL-----P 314
           NT +ILFI  GAF      + +                           P DL+     P
Sbjct: 244 NTKNILFICGGAFDGLEKQIQKRIGKSPIGFGGELKARAEEENIFKKVVPKDLVKFGMVP 303

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ LI QYK+L   +GI L+  +D++  +A  A
Sbjct: 304 EFVGRLPVISVLEELDENSLVRILTEPKNALIKQYKKLFSYDGIELEIEDDALIEIAKKA 363

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI---------DAEYVRLHIG 424
           +   +     GAR L+++ME +L D  FS  SD     VV+           E ++  I 
Sbjct: 364 IAQKT-----GARGLRSIMEGILLDTMFSVPSDGSVSKVVVKKDCVTDDKQPELIKSKIN 418

Query: 425 DFPSET 430
           D P  T
Sbjct: 419 DKPETT 424


>gi|22537459|ref|NP_688310.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76798608|ref|ZP_00780836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77409179|ref|ZP_00785891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
 gi|46576570|sp|Q8DZ10|CLPX_STRA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22534337|gb|AAN00183.1|AE014252_6 ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76586042|gb|EAO62572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77172225|gb|EAO75382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
          Length = 408

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG GK
Sbjct: 64  PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           NT +ILFI  GAF                     SR  D                  L+P
Sbjct: 237 NTKNILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+AD A
Sbjct: 297 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 357 IERKT-----GARGLRSIIEETMLDIMF 379


>gi|294141767|ref|YP_003557745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
 gi|293328236|dbj|BAJ02967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
          Length = 418

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +  ++ +D  EL   NILL+GPTG G
Sbjct: 60  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLK-NSNPKDGVELGKSNILLIGPTGSG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++   AR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 119 KTLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 172



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 173 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 232

Query: 292 NTDHILFIASGAFH------------------------------VSR------PADL--- 312
           +T  ILFI  GAF                               +S       P DL   
Sbjct: 233 DTSKILFICGGAFSGLEKVIEQRSQTGSGIGFGAQIKGESDKATISEILMQVEPEDLVKY 292

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL++ ++ L  Q+  L + EG+ L+F ED++ A+
Sbjct: 293 GLIPEFIGRLPVLSTLAELDEDALVQILSEPKNALTKQFAALFEMEGVELEFREDALKAI 352

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E +L DI +    + +   VVID   V+
Sbjct: 353 AAKAMTRKT-----GARGLRSIVEGILLDIMYDLPSVDDVAKVVIDESVVK 398


>gi|259046802|ref|ZP_05737203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
 gi|259036570|gb|EEW37825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
          Length = 413

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE--LMPKNILLVGPTG 63
             P+EI   LD Y++GQ+ AK+++A+A+ N ++R   L  +  DE  L   NI L+GPTG
Sbjct: 60  LKPQEIRKVLDEYVVGQEHAKKSLAVAVYNHYKRINHLLNEDEDEVELQKSNICLIGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+
Sbjct: 120 SGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLL 163



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 59/239 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQELIQI 235

Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADL-----LP 314
           +T +ILFI  GAF                           H S      P DL     +P
Sbjct: 236 DTSNILFIVGGAFDGIETIVKERLGAKVIGFGSSNKNLSSHESLMQLIIPEDLQKFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L+K D   ILT   + L+ QY++L   + + L+F   ++DA+A  A
Sbjct: 296 EFIGRLPITAALEPLSKEDLVNILTKPRNALVKQYQKLFAMDDVELEFEPKALDAIASKA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           +   +     GAR L++++E V+ D+ F      + T V+  E +    G    + D+Y
Sbjct: 356 IERRT-----GARGLRSIIESVMMDLMFEIPSRNDITKVVVTESIVTGTG----QPDLY 405


>gi|25011425|ref|NP_735820.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae NEM316]
 gi|76786965|ref|YP_329953.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77406716|ref|ZP_00783755.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
 gi|77411190|ref|ZP_00787542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77414070|ref|ZP_00790239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|46576576|sp|Q8E4L8|CLPX_STRA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123601634|sp|Q3K0K0|CLPX_STRA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24412963|emb|CAD47042.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562022|gb|ABA44606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77159868|gb|EAO71010.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|77162808|gb|EAO73767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77174679|gb|EAO77509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
          Length = 408

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG GK
Sbjct: 64  PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           NT +ILFI  GAF                     SR  D                  L+P
Sbjct: 237 NTKNILFIVGGAFDGIEDLVKQRLGEKIIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+AD A
Sbjct: 297 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 357 IERKT-----GARGLRSIIEETMLDIMF 379


>gi|325124453|gb|ADY83976.1| ATP-dependent protease ATP-binding subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 437

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L+++ME VL
Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378


>gi|299771639|ref|YP_003733665.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
 gi|298701727|gb|ADI92292.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
          Length = 437

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L+++ME VL
Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378


>gi|32266682|ref|NP_860714.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           hepaticus ATCC 51449]
 gi|46576465|sp|Q7VGY5|CLPX_HELHP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|32262733|gb|AAP77780.1| ATP-dependent Clp protease [Helicobacter hepaticus ATCC 51449]
          Length = 426

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 11/123 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPAD-LRD--ELMPKNI 56
           SP+E+ ++LD Y+IGQ +AKR  ++A+ N ++R        +++P   L+D  EL   NI
Sbjct: 65  SPKELKAKLDEYVIGQDEAKRVFSVAVYNHYKRIKANSLSEEEMPNPILQDDVELSKSNI 124

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V++
Sbjct: 125 LLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKK 184

Query: 117 SRR 119
           + +
Sbjct: 185 AEK 187



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 188 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFVQI 247

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314
           NT  ILF+  GAF                  H  +              P DL+     P
Sbjct: 248 NTSDILFVCGGAFDGLGDIIKRRLGGNVLGFHGEKKGKSEEDALLKYVEPDDLISYGLIP 307

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  ++K     ILT  ++ LI QY+++ + +G  L F +D+I+++A++A
Sbjct: 308 ELIGRLHMITTLSPISKEAMVEILTKPKNALIKQYQKIFEIDGATLHFEKDAIESIAELA 367

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME  + D+ +   +L    + I  E +
Sbjct: 368 IARKT-----GARGLRSIMEGAMIDLMYDLPELAGYEITISKECI 407


>gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp.
           JS614]
 gi|166214794|sp|A1SME0|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides
           sp. JS614]
          Length = 426

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 13/113 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNIL 57
           P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R Q  A L+            E+   NIL
Sbjct: 64  PKEIFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQ--AGLQPMSGKHSKEEVVEVAKSNIL 121

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 VIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 184 GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 243

Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312
           +T +ILF+  GAF    H+                               RP DL     
Sbjct: 244 DTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVRGKAEREAEDLLAQVRPEDLTKFGL 303

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L+ QY++L + +G+ L+FT D+I+A+AD
Sbjct: 304 IPEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIAD 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E VL  + +
Sbjct: 364 NALERGT-----GARGLRAIIEEVLLHVMY 388


>gi|320120477|gb|ADW16162.1| hypothetical protein HMPREF0389_01717 [Filifactor alocis ATCC
           35896]
          Length = 419

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61
             P EI + LD Y+IGQ++AK+ +A+A+ N ++R       P + ++ EL   N++++GP
Sbjct: 61  LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAA 169



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++E +  +             +  I
Sbjct: 179 GIIYIDEIDKIARKTDNPSLTRDVSGEGVQQALLKILESTKANVPPQGGRKHPHQDFLQI 238

Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------L 312
           +T +ILFI  GAF                     +  +  D                  L
Sbjct: 239 DTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSNISFYEKVESQDLLKYGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE   R PV V L++L++     ILT+ ++ L+ QYK+L + +G+ L+  ED++ A+A 
Sbjct: 299 IPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFELDGVELEVEEDALIAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++       IGAR L++++E ++ DI +
Sbjct: 359 QAIDRK-----IGARGLRSILENIMIDIMY 383


>gi|293610273|ref|ZP_06692574.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827505|gb|EFF85869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 439

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG 
Sbjct: 65  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 124

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 125 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 170



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 180 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 240 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 300 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L+++ME VL
Sbjct: 360 KKALERNT-----GARGLRSIMENVL 380


>gi|225021670|ref|ZP_03710862.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681341|ref|ZP_07404148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
 gi|224945661|gb|EEG26870.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659546|gb|EFM49046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
          Length = 427

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 10/121 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD---ELMPKNILL 58
           P EI + LD+Y++GQ +AKR +A+A+ N ++R +            RD   EL   NIL+
Sbjct: 67  PSEIAAFLDKYVVGQDEAKRILAVAVYNHYKRVRAEDARTLGGRKYRDDDTELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQ 186

Query: 119 R 119
           R
Sbjct: 187 R 187



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 59/215 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S+  + G          +
Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI +GAF                                   +VS P DL    
Sbjct: 248 DTSNILFIVAGAFAGLEKVIEARRGKKALGFGAEIPSKADQNDMEIFKYVS-PEDLVKFG 306

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   + +L++     +LT+ +++L+ QY+ L   + + L F +D+++ +A
Sbjct: 307 MIPEFIGRLPIVATVGNLDQKSLVKVLTEPKNSLVKQYQRLFDMDRVELLFEDDALEVIA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           D A++  +     GAR L+ +ME +L  I F   D
Sbjct: 367 DKALDRGT-----GARGLRAIMEEILLPIMFEVPD 396


>gi|169634425|ref|YP_001708161.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii SDF]
 gi|169797266|ref|YP_001715059.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AYE]
 gi|184156808|ref|YP_001845147.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii ACICU]
 gi|213155940|ref|YP_002317985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB0057]
 gi|215484707|ref|YP_002326942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB307-0294]
 gi|239500789|ref|ZP_04660099.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB900]
 gi|260556148|ref|ZP_05828367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 19606]
 gi|301346761|ref|ZP_07227502.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB056]
 gi|301512253|ref|ZP_07237490.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB058]
 gi|301594242|ref|ZP_07239250.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB059]
 gi|332851227|ref|ZP_08433300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013150]
 gi|332866081|ref|ZP_08436809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013113]
 gi|332873221|ref|ZP_08441178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6014059]
 gi|226706570|sp|B7H092|CLPX_ACIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706571|sp|B7I5E4|CLPX_ACIB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238685491|sp|A3M1Y8|CLPX_ACIBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688025|sp|B0V4T7|CLPX_ACIBY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688111|sp|B0VKU4|CLPX_ACIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691033|sp|B2I3C2|CLPX_ACIBC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169150193|emb|CAM88087.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AYE]
 gi|169153217|emb|CAP02313.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii]
 gi|183208402|gb|ACC55800.1| ATP-dependent protease Clp, ATPase subunit [Acinetobacter baumannii
           ACICU]
 gi|193076290|gb|ABO10932.2| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055100|gb|ACJ40002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB0057]
 gi|213988694|gb|ACJ58993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB307-0294]
 gi|260410203|gb|EEX03502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 19606]
 gi|322506700|gb|ADX02154.1| clpX [Acinetobacter baumannii 1656-2]
 gi|323516574|gb|ADX90955.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332730107|gb|EGJ61434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013150]
 gi|332734827|gb|EGJ65920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013113]
 gi|332738733|gb|EGJ69603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6014059]
          Length = 437

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++       +D E+   NILL+GPTG 
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 101/372 (27%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151
           I  + VDV +++V+ S++ E  + AS  +     I  AL    +G+     T  V     
Sbjct: 32  ICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVYNH 91

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K+L+ G+      D+E+A      SN  + G    G   L++  ++++           
Sbjct: 92  YKRLKVGQSGHVSKDVEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258
                P  M D +  L +   V  D   +V+               GI+++DE DKI  +
Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAF- 304
                I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF 
Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFA 251

Query: 305 ----------------------------------HVSRPADL-----LPEIQGRFPVRVH 325
                                                 P DL     +PE  GR PV   
Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPVIAT 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A  A+  N+     G
Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNT-----G 366

Query: 386 ARRLQTVMERVL 397
           AR L++++E VL
Sbjct: 367 ARGLRSILENVL 378


>gi|1770075|emb|CAA99537.1| ATP dependent Clp protease [Bacillus subtilis]
          Length = 420

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAA 166



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  G F      + R                            P DLL     
Sbjct: 236 DTTNILFICGGRFDGIEQIIKRRLAQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++  +A  
Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395


>gi|319745297|gb|EFV97615.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 416

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG GK
Sbjct: 72  PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 132 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 184



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 244

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           NT +ILFI  GAF                     SR  D                  L+P
Sbjct: 245 NTKNILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D++ A+AD A
Sbjct: 305 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     ++ T V
Sbjct: 365 IERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKV 398


>gi|313680147|ref|YP_004057886.1| ATP-dependent clp protease ATP-binding subunit clpx [Oceanithermus
           profundus DSM 14977]
 gi|313152862|gb|ADR36713.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
          Length = 398

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD Y+IGQ++AK+ +A+A+ N ++R Q P     EL   N+LL+GPTG GKT 
Sbjct: 60  PAEIKAFLDDYVIGQEEAKKVLAVAVYNHYKRLQHP---EAELGKSNVLLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 117 LAETLARQLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 158



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 52/212 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  +V  + G         ++
Sbjct: 168 GIIYIDEIDKIARKSEGPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQETIAL 227

Query: 292 NTDHILFIASGAFHVSR---------------------------PADL-----LPEIQGR 319
           NT +ILFI  GAF                               P DL     +PE  GR
Sbjct: 228 NTRNILFILGGAFDGLEAIVKARTDQTPIGFRTQAPEAGTLEVIPEDLVKYGLIPEFVGR 287

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV V L  L++ D   ILT+ ++ L+ QY+ L + EG+ L+ TE ++  +A  A+   +
Sbjct: 288 VPVIVQLHELSEDDLVRILTEPKNALVRQYRTLFELEGVNLEITEAALREVARRALERGT 347

Query: 380 TVGDIGARRLQTVMERVLEDISF--SASDLQE 409
                GAR L++V+ER + D+ +   AS ++E
Sbjct: 348 -----GARGLRSVIERAMVDLMYEVPASGVRE 374


>gi|256841000|ref|ZP_05546507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parabacteroides sp. D13]
 gi|256736843|gb|EEU50170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parabacteroides sp. D13]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L + +GI L F E   + + D 
Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S    + K + +  EY +
Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++++ N ++R  Q++ AD   E+   NI++VG TG GK
Sbjct: 63  PEDIKTFLDQYVIGQNDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174


>gi|328948167|ref|YP_004365504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           succinifaciens DSM 2489]
 gi|328448491|gb|AEB14207.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           succinifaciens DSM 2489]
          Length = 420

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 8/109 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGP 61
           SP+E  + LD+Y+IGQ  AK+ +++A+ N +++      QQL  D++ E    NILL+GP
Sbjct: 64  SPKEFKAYLDQYVIGQDYAKKVLSVAVYNHYKQLSISKEQQLTMDVKIE--KSNILLLGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    PF   + T  TE GYVG +VE ++  L++ A
Sbjct: 122 TGSGKTLLAKTLAQKLNVPFAIADATTLTEAGYVGEDVENVLLKLINAA 170



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 180 GIIFIDEIDKIGRKSENTSITRDVSGEGVQQALLKILEGTHASVPPQGGRKHPNQEMIDI 239

Query: 292 NTDHILFIASGAF-----------------------HVSRPA----------------DL 312
           +T +ILFI  GAF                       H +                    L
Sbjct: 240 DTTNILFICGGAFVGLDKIIEQRLSTASIGFGAEGTHRTNEERMELLNQVTSDDLVKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+   LK LNK D + IL + ++ +  Q++ +   + + L F +D+ID +A+
Sbjct: 300 IPELIGRLPMTCALKELNKEDLKRILVEPKNAITKQFQAIFAIDDVELTFDDDAIDQIAE 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           +A+   +     GAR L+ ++E +L D+ +    ++ +K +VI  + V
Sbjct: 360 MAIRSKT-----GARGLRAIVEHILLDLMYEVPSVKGKKKLVITKDIV 402


>gi|256544469|ref|ZP_05471842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399794|gb|EEU13398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           vaginalis ATCC 51170]
          Length = 402

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD+Y+I Q+ AK+ +++++ N ++R     D +D  EL   NIL++GPTG G
Sbjct: 61  TPSEIKDYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDSKDDVELQKSNILMLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 121 KTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 53/206 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 234

Query: 292 NTDHILFIASGAFHVSRP-------------------------AD----------LLPEI 316
           +T +ILFI  GAF   +                          AD          L+PE 
Sbjct: 235 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSEDSENKEVSLADVTTEDLLKFGLIPEF 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L+ L+ +    IL + +++L+ QY++L + +G+ L F ++++  +A+ A  
Sbjct: 295 IGRVPIVVSLEDLDVNSLVKILQEPKNSLLKQYQKLFELDGVKLTFEDEAVKEIAEKAFK 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402
             +     GAR L+T++E +L D+ F
Sbjct: 355 QET-----GARGLRTILEDLLLDVMF 375


>gi|167765437|ref|ZP_02437550.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC
           43183]
 gi|167697065|gb|EDS13644.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC
           43183]
          Length = 414

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYVKLFEMDGVKLTFEDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           A+        +GAR L++++E ++ D  F      +    +  +Y R  +
Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDGFTVTLDYARAQL 403



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ DAKR +++++ N ++R  Q   D   E+   NI++VG TG GKT
Sbjct: 67  PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|116492902|ref|YP_804637.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265634|sp|Q03F27|CLPX_PEDPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116103052|gb|ABJ68195.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pediococcus
           pentosaceus ATCC 25745]
          Length = 418

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 5/108 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----DELMPKNILLVGPT 62
           +P EIV  L++Y+IGQ++AK+ +++A+ N ++R    A+ +      EL   NI L+GPT
Sbjct: 64  TPAEIVDYLNQYVIGQEEAKKTLSVAVYNHYKRINKMAETKADEDEPELQKSNISLIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 171



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 59/222 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 181 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------HVSR-------------PADLL----- 313
           NT +ILFI  GAF                    + S              P DLL     
Sbjct: 241 NTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTTVEEDKSLMQQVIPEDLLNFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ L + D   ILT+ ++ L+ QYK L+  +G+ L FT  ++ A+A+ 
Sbjct: 301 PEFIGRLPILSALEKLTEEDLVHILTEPKNALVKQYKTLLGLDGVELKFTPQALHAIANQ 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
           A++ N+     GAR L++++E V+ DI F   S +D+ + TV
Sbjct: 361 AISRNT-----GARGLRSIIENVMRDIMFEIPSRNDVAKVTV 397


>gi|256961587|ref|ZP_05565758.1| ClpX [Enterococcus faecalis Merz96]
 gi|256952083|gb|EEU68715.1| ClpX [Enterococcus faecalis Merz96]
          Length = 417

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 64  PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 169



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 57/209 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T ++LFI  GAF                                 H+  P DLL     
Sbjct: 239 DTTNVLFIVGGAFDGIETIVKNRLGKKTIGFGKTNSALNEEESIMQHII-PEDLLKFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+F  +++ A+A  
Sbjct: 298 PEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E ++ D+ F
Sbjct: 358 AIERNT-----GARGLRSIIEEIMMDVMF 381


>gi|29376445|ref|NP_815599.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus
           faecalis V583]
 gi|255972438|ref|ZP_05423024.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T1]
 gi|255975538|ref|ZP_05426124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T2]
 gi|256619398|ref|ZP_05476244.1| ClpX [Enterococcus faecalis ATCC 4200]
 gi|256762854|ref|ZP_05503434.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T3]
 gi|256853438|ref|ZP_05558808.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           T8]
 gi|256959236|ref|ZP_05563407.1| ClpX [Enterococcus faecalis DS5]
 gi|256964803|ref|ZP_05568974.1| ClpX [Enterococcus faecalis HIP11704]
 gi|257079304|ref|ZP_05573665.1| ClpX [Enterococcus faecalis JH1]
 gi|257082257|ref|ZP_05576618.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|257084874|ref|ZP_05579235.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257087129|ref|ZP_05581490.1| ClpX [Enterococcus faecalis D6]
 gi|257090206|ref|ZP_05584567.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           CH188]
 gi|257416359|ref|ZP_05593353.1| ClpX [Enterococcus faecalis AR01/DG]
 gi|257419607|ref|ZP_05596601.1| ATP-dependent protease ClpX [Enterococcus faecalis T11]
 gi|257422287|ref|ZP_05599277.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           X98]
 gi|294779794|ref|ZP_06745181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis PC1.1]
 gi|300861010|ref|ZP_07107097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TUSoD Ef11]
 gi|46576517|sp|Q833M7|CLPX_ENTFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29343909|gb|AAO81669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis V583]
 gi|255963456|gb|EET95932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T1]
 gi|255968410|gb|EET99032.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T2]
 gi|256598925|gb|EEU18101.1| ClpX [Enterococcus faecalis ATCC 4200]
 gi|256684105|gb|EEU23800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T3]
 gi|256711897|gb|EEU26935.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           T8]
 gi|256949732|gb|EEU66364.1| ClpX [Enterococcus faecalis DS5]
 gi|256955299|gb|EEU71931.1| ClpX [Enterococcus faecalis HIP11704]
 gi|256987334|gb|EEU74636.1| ClpX [Enterococcus faecalis JH1]
 gi|256990287|gb|EEU77589.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|256992904|gb|EEU80206.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|256995159|gb|EEU82461.1| ClpX [Enterococcus faecalis D6]
 gi|256999018|gb|EEU85538.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           CH188]
 gi|257158187|gb|EEU88147.1| ClpX [Enterococcus faecalis ARO1/DG]
 gi|257161435|gb|EEU91395.1| ATP-dependent protease ClpX [Enterococcus faecalis T11]
 gi|257164111|gb|EEU94071.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           X98]
 gi|294453168|gb|EFG21583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis PC1.1]
 gi|295113200|emb|CBL31837.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Enterococcus sp. 7L76]
 gi|300850049|gb|EFK77799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481059|gb|ADX80498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis 62]
 gi|327535434|gb|AEA94268.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis OG1RF]
          Length = 417

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R  Q   A  +D  EL   NI L+GPTG 
Sbjct: 64  PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 169



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 57/209 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T ++LFI  GAF                                 H+  P DLL     
Sbjct: 239 DTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHII-PEDLLKFGLI 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+F  +++ A+A  
Sbjct: 298 PEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E ++ D+ F
Sbjct: 358 AIERNT-----GARGLRSIIEEIMMDVMF 381


>gi|17231176|ref|NP_487724.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc sp. PCC
           7120]
 gi|21263468|sp|Q8YQX7|CLPX_ANASP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17132817|dbj|BAB75383.1| ATP-dependent Clp protease regulatory subunit [Nostoc sp. PCC 7120]
          Length = 445

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60
           PREI   LD ++IGQ +AK+ +++A+ N ++R  +          D   EL   NILL+G
Sbjct: 82  PREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSGKNGDDAVELQKSNILLIG 141

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 PTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R AD+L            
Sbjct: 261 DTSNILFICGGAFVGLEKVVDQRGGKKSIGFVQPGEGQSKEKRAADVLRHLEPDDLVKFG 320

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   +  L++     ILT   S L+ QY++L+K + + LDF  D++ A+A
Sbjct: 321 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALKAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 QEAYRRKT-----GARALRGIVEELMLDVMY 406


>gi|314986604|gb|EFT30696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA2]
          Length = 429

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|110597770|ref|ZP_01386054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340677|gb|EAT59157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           ferrooxidans DSM 13031]
          Length = 438

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 6/117 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGPT 62
           SP+ I+  LD+Y++GQ+ AK+++++A+ N ++R   Q+   D  DE++    NILL+GPT
Sbjct: 80  SPKAIMDSLDKYVVGQEIAKKSLSVAVYNHYKRIESQEWMHDEDDEVVIEKSNILLIGPT 139

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           G GKT +++ LA +   PF  V+ T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 140 GTGKTLLAQTLANMLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 196



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 61/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 255 NINTKNILFICGGAFEGLDRLIAKRVSKSSMGFGSKVKSKQTGYDPEILRYVTQDDLHEY 314

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++   R IL + ++ ++ QYK+L + +G+ L+FTE+++D +
Sbjct: 315 GLIPEFIGRLPVISTLDLLDEKALRNILVEPKNAIVKQYKKLFEMDGVELEFTEEALDKV 374

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             +A+   +     GAR L++V+E V+ DI F    ++
Sbjct: 375 VSIAIERGT-----GARALRSVLENVMIDIMFELPSMK 407


>gi|296170474|ref|ZP_06852062.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894945|gb|EFG74666.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 426

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|294101894|ref|YP_003553752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
 gi|293616874|gb|ADE57028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
          Length = 429

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P E+   LD+Y+IGQ+DAK+ +++A+ N ++R    ++  D  EL   N+LL+GPTG GK
Sbjct: 76  PAEVKKFLDQYVIGQEDAKKILSVAVYNHFKRISTMSEENDDIELQKSNVLLIGPTGSGK 135

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 136 TLLAQSLAKKLNVPFAMADATTLTEAGYVGEDVENILVRLLQAA 179



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 61/231 (26%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---- 289
           IQ  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  K G    
Sbjct: 183 IQAAER-GIIYIDELDKITRKSESASITRDVSGEGVQQALLKILEGTLSNVPPKGGRKHP 241

Query: 290 -----SINTDHILFIASGAF---------------------------HVS-------RPA 310
                 ++T +ILFI  GAF                           H +       +P 
Sbjct: 242 YQDFIQMDTSNILFICGGAFAGIEEVIGRRVNKKMIGFGGDILSVKEHRNYELMRQVQPE 301

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL+     PE+ GR PV V L+ L+      IL + ++ LI QY++  + EG+ L F +D
Sbjct: 302 DLMAFGFIPELIGRLPVVVPLEELDDDALARILVEPKNALIRQYQKTFEIEGVKLFFEQD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVV 413
           +I A+A  A   N+     GAR L+++ME ++ D+ +   S S+  EK ++
Sbjct: 362 AIKAIAKEARKKNT-----GARGLRSIMEYLMLDLMYEIPSRSNEVEKIII 407


>gi|225848211|ref|YP_002728374.1| ATP-dependent protease ATP-binding subunit ClpX
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643885|gb|ACN98935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 405

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R   + L  +   E+   NILL+GPTG 
Sbjct: 55  TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKDLFKNTGVEVEKSNILLIGPTGS 114

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 115 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 160



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GIV++DE DKI A+ SG+   ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 170 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 228

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            I+T +ILFI  GAF                                   +P DL+    
Sbjct: 229 QIDTTNILFILGGAFVGLEDIIRQRLGKKAIGFGAEIKSKKEEGDLLEQVQPEDLIKFGL 288

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   LK L++     +LT+ ++ LI QY+ L+  +GI L+FTED++  +A 
Sbjct: 289 IPEFLGRIPVIATLKELDEDMLVRVLTEPKNALIKQYQALLAVDGIDLEFTEDALREIAR 348

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+ ++E ++ DI + A + +  K VVID + V
Sbjct: 349 EAIKRKT-----GARGLRAIIEDIMLDIMYEAPNQKTLKKVVIDKDVV 391


>gi|183601062|ref|ZP_02962555.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
 gi|188019402|gb|EDU57442.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
          Length = 425

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 14/120 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R      LR+        EL   NILL+
Sbjct: 66  TPHEIREHLDDYVIGQEQAKKVLSVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 120 GPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T  ILFI  GAF                                      + P DL+  
Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESDKISEGELLTQTEPEDLIKF 299

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLEGTELEFREEALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
           A  A+   +     GAR L++++E  L +  +    ++  EK VV
Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMEGVEKVVV 399


>gi|293189654|ref|ZP_06608371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
 gi|292821392|gb|EFF80334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
          Length = 419

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65
           PREI   L+ ++IGQ  AKRA+++A+ N ++R   +   +  D L  K NILL+GPTG G
Sbjct: 65  PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREVGNAEDMLGTKSNILLLGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +
Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238

Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314
           +T  ILFIA+GAF                         S   DL              +P
Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAEDLHKFGMIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+    K L + D   +LT+  ++L+ QY+ L + + + L+FT +++ A+A  A
Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMDLEFTHEALLAIAARA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
            N   T    GAR L ++ME+ L D+ F
Sbjct: 359 -NERKT----GARGLSSIMEQTLSDLMF 381


>gi|15618755|ref|NP_225041.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           pneumoniae CWL029]
 gi|15836379|ref|NP_300903.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae J138]
 gi|16752193|ref|NP_445560.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae AR39]
 gi|33242206|ref|NP_877147.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6225166|sp|Q9Z760|CLPX_CHLPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4377161|gb|AAD18984.1| CLP Protease ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189936|gb|AAF38799.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Chlamydophila pneumoniae AR39]
 gi|8979220|dbj|BAA99054.1| CLP protease ATPase [Chlamydophila pneumoniae J138]
 gi|33236717|gb|AAP98804.1| ATP-binding subunit of Clp protease [Chlamydophila pneumoniae
           TW-183]
          Length = 421

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +A+A+ N ++R + L  + +      N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL +VEG++ +            +Y 
Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYI 239

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLIAF 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E + L F ++++ A+
Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYMELFAEENVKLVFKKEALYAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 360 AKKAKQAKT-----GARALGMILENLLRDLMF 386


>gi|182438718|ref|YP_001826437.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779367|ref|ZP_08238632.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           cf. griseus XylebKG-1]
 gi|238688994|sp|B1VXA8|CLPX_STRGG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|178467234|dbj|BAG21754.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659700|gb|EGE44546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           cf. griseus XylebKG-1]
          Length = 432

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRD--ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q       A   D  EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408


>gi|269302632|gb|ACZ32732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pneumoniae LPCoLN]
          Length = 421

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +A+A+ N ++R + L  + +      N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL +VEG++ +            +Y 
Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYI 239

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLIAF 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E + L F ++++ A+
Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFAEENVKLVFKKEALYAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 360 AKKAKQAKT-----GARALGMILENLLRDLMF 386


>gi|319946999|ref|ZP_08021233.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
 gi|319747047|gb|EFV99306.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  D+    L   NIL+VGPTG 
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHENREDDNDVDLQKSNILMVGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGKNNKAIDESSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F +++++ +A  A
Sbjct: 299 ELIGRLPVLAALEQLTVDDLVRILKEPRNALVKQYQALLSFDDVELEFDDEALEEIASKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|299822630|ref|ZP_07054516.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM
           20601]
 gi|299816159|gb|EFI83397.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM
           20601]
          Length = 421

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI + L  Y+IGQ+ AK+A+++A+ N ++R   L ++   EL   NI L+GPTG GKT
Sbjct: 67  PQEIRNILSEYVIGQERAKKALSVAVYNHYKRVNGLGSEDEVELSKSNICLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 169



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQI 238

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++S+  P DLL     P
Sbjct: 239 DTSNILFIVGGAFDGIEQIVKNRMGEKVIGFGSDNQRLKEDETYLSKVVPEDLLRFGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L++     ILT+ ++ L+ QY ++++ + + L+F  +++ A+A  A
Sbjct: 299 EFIGRLPVIATLEQLDEEALVSILTEPKNALVKQYVKMLELDDVTLEFEPEALKAIAKEA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 359 IARKT-----GARGLRSIIEKLMLEVMF 381


>gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 425

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  ++ +D  EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NSNHKDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++   AR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 64/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313
           +T  ILFI  GAF           H                            P DL+  
Sbjct: 240 DTSKILFICGGAFSGLEKVIEQRSHKGSGIGFGAQIKGEDDKATISEILMQVEPEDLIKY 299

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL++ ++ L  Q+  L + EG+ L+FTED++ A+
Sbjct: 300 GLIPEFVGRLPVLSTLTELDEEALVQILSEPKNALTKQFAALFEMEGVELEFTEDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A  A+   +     GAR L++++E +L DI +   S+ D+ +  VVID   V+
Sbjct: 360 AAKAMMRKT-----GARGLRSIVEGILLDIMYDLPSSDDVAK--VVIDESVVK 405


>gi|301312049|ref|ZP_07217971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 20_3]
 gi|300830151|gb|EFK60799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 20_3]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L + +GI L F E   + + D 
Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S    + K + +  EY +
Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++++ N ++R  Q++ AD   E+   NI++VG TG GK
Sbjct: 63  PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174


>gi|257126077|ref|YP_003164191.1| ATP-dependent protease ATP-binding subunit ClpX [Leptotrichia
           buccalis C-1013-b]
 gi|257050016|gb|ACV39200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           buccalis C-1013-b]
          Length = 409

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
             P+EI ++LD YIIGQ+  K+ +++A+ N ++R   +Q   D   EL   N+LLVGPTG
Sbjct: 63  LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKNVDNDVELQKSNVLLVGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  A
Sbjct: 123 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 169



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 178 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 237

Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313
           INT  ILFI  GAF                                     P DL+    
Sbjct: 238 INTKDILFIVGGAFEGLEAKVKDRVNEKRVGFGLETNNTKLDDLTLFENVLPEDLIKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ +++L+ QYK+  + E + L+F +D+I  +A 
Sbjct: 298 IPELIGRLPVITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLEFEKDAITEIAQ 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +A+        IGAR L++++E V+ D+ +   S    K V+I  E V
Sbjct: 358 LALKRK-----IGARGLRSIIESVMTDLMYEIPSKDNVKKVIITKEAV 400


>gi|182417594|ref|ZP_02948916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum 5521]
 gi|237668486|ref|ZP_04528470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378549|gb|EDT76078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum 5521]
 gi|237656834|gb|EEP54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 429

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y++GQ  AK+++A+A+ N ++R     D  D EL   NILL+GPTG GKT
Sbjct: 63  PNEIKEYLDSYVVGQDRAKKSLAVAVYNHYKRINTNKDDIDVELSKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF-------------------------HVS---------RPADLL---- 313
           NT +ILFI  GAF                         H            PADLL    
Sbjct: 235 NTSNILFICGGAFDGVDKIIEGRTRKSSMGFGADIQSKHEKDVGQLFKEIMPADLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SLNK     ILT  ++ L+ QYK+L + + + LDF + ++ A+A 
Sbjct: 295 IPEFVGRLPILVTLESLNKEALIEILTKPKNALVKQYKKLFELDDVKLDFEDGALTAIAA 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A++  +     GAR L+ ++E ++ +I +    D +   V+I  E ++
Sbjct: 355 EAISRQT-----GARGLRAIIEDIMNEIMYEIPCDNRITKVIITEETIK 398


>gi|69246840|ref|ZP_00604149.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO]
 gi|257878469|ref|ZP_05658122.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,230,933]
 gi|257882891|ref|ZP_05662544.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,502]
 gi|257889331|ref|ZP_05668984.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,410]
 gi|257894344|ref|ZP_05673997.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,408]
 gi|258616006|ref|ZP_05713776.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus
           faecium DO]
 gi|260560058|ref|ZP_05832236.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium C68]
 gi|261207453|ref|ZP_05922139.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium TC 6]
 gi|289565864|ref|ZP_06446305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium D344SRF]
 gi|293559815|ref|ZP_06676333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1162]
 gi|294623406|ref|ZP_06702262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium U0317]
 gi|314939702|ref|ZP_07846926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a04]
 gi|314942230|ref|ZP_07849082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133C]
 gi|314948863|ref|ZP_07852233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0082]
 gi|314950805|ref|ZP_07853877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133A]
 gi|314993230|ref|ZP_07858609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133B]
 gi|314995227|ref|ZP_07860340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a01]
 gi|68195073|gb|EAN09535.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO]
 gi|257812697|gb|EEV41455.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,230,933]
 gi|257818549|gb|EEV45877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,502]
 gi|257825691|gb|EEV52317.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,410]
 gi|257830723|gb|EEV57330.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,408]
 gi|260073893|gb|EEW62217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium C68]
 gi|260078344|gb|EEW66049.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium TC 6]
 gi|289162324|gb|EFD10183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium D344SRF]
 gi|291597172|gb|EFF28367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium U0317]
 gi|291606234|gb|EFF35650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1162]
 gi|313590557|gb|EFR69402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a01]
 gi|313592285|gb|EFR71130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133B]
 gi|313597020|gb|EFR75865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133A]
 gi|313599002|gb|EFR77847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133C]
 gi|313641037|gb|EFS05617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a04]
 gi|313644736|gb|EFS09316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0082]
          Length = 416

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           P EI+  L+ Y+IGQ  AKR++A+A+ N ++R  QQ   +  D EL   NI L+GPTG G
Sbjct: 64  PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                 H+  P DLL     
Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +   L+F  +++ A+A  
Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNTELEFEPEALRAIAKK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E ++ D+ F
Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380


>gi|262383889|ref|ZP_06077025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_33B]
 gi|262294787|gb|EEY82719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_33B]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L + +GI L F E   + + D 
Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S    + K + +  EY +
Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++++ N ++R  Q++ AD   E+   NI++VG TG GK
Sbjct: 63  PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174


>gi|239941126|ref|ZP_04693063.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           roseosporus NRRL 15998]
 gi|239987604|ref|ZP_04708268.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           roseosporus NRRL 11379]
 gi|291444567|ref|ZP_06583957.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|291347514|gb|EFE74418.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           roseosporus NRRL 15998]
          Length = 432

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRD--ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q       A   D  EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+ L  T    GAR L+ +ME VL+ + +     ++   VVI  + VR
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVR 405


>gi|298491693|ref|YP_003721870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc
           azollae' 0708]
 gi|298233611|gb|ADI64747.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc
           azollae' 0708]
          Length = 446

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 11/128 (8%)

Query: 3   LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDEL 51
           ++FN    PREI   LD ++IGQ +AK+ +++A+ N ++R  +          AD   E+
Sbjct: 74  ISFNQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGNGKGGADDAVEI 133

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 134 QKSNILLMGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193

Query: 112 NIVRESRR 119
             V E++R
Sbjct: 194 LDVEEAQR 201



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311
           +T +ILFI  GAF                             R AD              
Sbjct: 262 DTSNILFICGGAFVGLEKVVDQRVGKKSIGFVQSGEGQSKEKRAADTLRHLEPDDLVKFG 321

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR P+   +  L++     ILT   S L+ QY++L+K + + LDF  +++ A+A
Sbjct: 322 MIPEFIGRMPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPEALRAIA 381

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 QEAHRRKT-----GARALRGIVEELMLDVMY 407


>gi|150008999|ref|YP_001303742.1| ATP-dependent protease ATP-binding subunit ClpX [Parabacteroides
           distasonis ATCC 8503]
 gi|149937423|gb|ABR44120.1| ATP-dependent Clp protease ATP-binding subunit [Parabacteroides
           distasonis ATCC 8503]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L + +GI L F E   + + D 
Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S    + K + +  EY +
Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++++ N ++R  Q++ AD   E+   NI++VG TG GK
Sbjct: 63  PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174


>gi|313675246|ref|YP_004053242.1| ATP-dependent clp protease ATP-binding subunit clpx [Marivirga
           tractuosa DSM 4126]
 gi|312941944|gb|ADR21134.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marivirga
           tractuosa DSM 4126]
          Length = 412

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 58/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ +L L+EG+SV+            K  ++
Sbjct: 175 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTSVNVPPQGGRKHPDQKMINV 234

Query: 292 NTDHILFIASGAFH-VSRP--------------AD------------------------L 312
           +T++ILFI  GAF  +SR               AD                        L
Sbjct: 235 DTENILFICGGAFDGISRSIASRLNTTPLGFAKADTKEEEIDKENLLQYITAQDLKNFGL 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  HL  L+K   +LILT+ ++ L+ QY +L   EGI L   + ++D +  
Sbjct: 295 IPELIGRLPVLTHLDPLSKDTLKLILTEPKNALVKQYNKLFDMEGINLVIEDSALDYIVQ 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
            AV        +GAR L+++ E ++ D  F        T ++ID +Y
Sbjct: 355 KAVEFK-----LGARGLRSICEVIMTDAMFEFDGESSGTELIIDEKY 396



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPT 62
           FN   P E+ + LD+Y++GQ +AK+ +++A+ N ++R    +   D  + K NI++VG T
Sbjct: 58  FNLIRPIEMKTHLDQYVVGQDEAKKVMSVAVYNHYKRLMQKSTKDDVTIEKSNIIMVGET 117

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 118 GTGKTYLAKTLARILQVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAQR 174


>gi|304437033|ref|ZP_07396996.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369984|gb|EFM23646.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 421

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ +AK+++++A+ N ++R        +  EL   N+L++GPTG GK
Sbjct: 64  PKEIRRILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T +ILFI  G+F                                 +S+  P DL+    
Sbjct: 237 DTTNILFICGGSFDGLEEIIESRLGKKQMGFGAEVRSKRRVTVGASLSKIIPEDLMKNGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L SL++     ILT+ ++ L+ Q+++L++ +G+ L F ED++  +A 
Sbjct: 297 IPEFIGRLPVVVTLNSLDEEALVRILTEPKNALVKQFQKLLELDGVRLTFEEDALHLIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            A+   +     GAR L+ ++E ++ ++ +    +   T  
Sbjct: 357 EALTHKT-----GARGLRAIVEGIMRNVMYEVPSIHGVTAC 392


>gi|311069315|ref|YP_003974238.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           atrophaeus 1942]
 gi|310869832|gb|ADP33307.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           atrophaeus 1942]
          Length = 420

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + L+F ED++  +A  
Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEEDALAEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   + D  EK V     V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409


>gi|126173839|ref|YP_001049988.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS155]
 gi|160874745|ref|YP_001554061.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS195]
 gi|217973909|ref|YP_002358660.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS223]
 gi|304409712|ref|ZP_07391332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|307304068|ref|ZP_07583821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|166215201|sp|A3D306|CLPX_SHEB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044150|sp|A9KWH8|CLPX_SHEB9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763862|sp|B8E5E8|CLPX_SHEB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125997044|gb|ABN61119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS155]
 gi|160860267|gb|ABX48801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS195]
 gi|217499044|gb|ACK47237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS223]
 gi|304352230|gb|EFM16628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|306912966|gb|EFN43389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|315266987|gb|ADT93840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS678]
          Length = 426

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLK-NASPKDGIELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKEKATISETLTQVEPGDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386


>gi|300871407|ref|YP_003786280.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli 95/1000]
 gi|40794667|gb|AAR90874.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli]
 gi|300689108|gb|ADK31779.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli 95/1000]
          Length = 594

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSEL++ +IGQ DAK+A+++       R     D+       NIL++GPTGVGK
Sbjct: 229 LTPKEIVSELNKTVIGQDDAKKALSVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 285

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T + + LA + G PF + +VT  TE GYVG +VE ++ +L   A
Sbjct: 286 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYKKA 329



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 58/213 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290
           +GIVFLDE DKI   D+        S + VQ  LL ++ G  +   ++G           
Sbjct: 338 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 397

Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT +ILFI  GAF                                +    D       
Sbjct: 398 VMNTKNILFIFGGAFVGLEDIIKMRLKGESSLGFGSNAVLNKLQKNKILSQVDVKDVEKY 457

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR P+ V L  L K + + IL  T+ + I++Y +  K+ G  L  T+D+I+ +
Sbjct: 458 GMIPEFIGRIPIIVTLNELTKDNLKDILLKTKESPIIKYVDFFKSIGKKLILTDDAINYI 517

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            D A  +N     +GAR L++++E  + +I F+
Sbjct: 518 VDKASTMN-----MGARSLKSIVETAMVNILFN 545


>gi|46447011|ref|YP_008376.1| ATP-dependent protease ATP-binding subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|61211514|sp|Q6MBE8|CLPX_PARUW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46400652|emb|CAF24101.1| probable ATP-dependent Clp protease ATP-binding subunit X
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 413

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 4   TFNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           T+ F    P+EI  +LD YIIGQ++AK+ +++ + N ++R +      D  E    N+LL
Sbjct: 53  TYEFKILKPKEIKEKLDEYIIGQENAKKTISVGVYNHYKRIRSKNKEADGIEFSKSNVLL 112

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GPTG GKT I++ LA +   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 113 FGPTGSGKTLIAKTLASILDVPFTIADATTLTEAGYVGEDVENIILRLLQAA 164



 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI    +   I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233

Query: 292 NTDHILFIASGAF---------HVSR--------------------------PADLL--- 313
           NT++ILFI  GAF          + R                          P DL+   
Sbjct: 234 NTENILFIVGGAFVNLEKIIAKRLGRNTIGFDGSNREVVDPTQKSLLLSKVEPEDLIQFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GRF    +   L   D   ILT+ ++  I Q+  + + EG+ L FTED++ A+A
Sbjct: 294 MIPEFVGRFNSIANCNELQLPDLINILTEPKNAFIKQFIAMFEAEGVKLQFTEDALAAIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
             A+   +     GAR L+ ++E ++ ++ +   SD     ++I+ E V
Sbjct: 354 QQAIEAGT-----GARALRLILENLMRELMYEIPSDETISEILIEKETV 397


>gi|15827775|ref|NP_302038.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           leprae TN]
 gi|221230252|ref|YP_002503668.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           leprae Br4923]
 gi|21263482|sp|Q9CBY6|CLPX_MYCLE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763857|sp|B8ZRP1|CLPX_MYCLB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13093327|emb|CAC30427.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           leprae]
 gi|219933359|emb|CAR71571.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           leprae Br4923]
          Length = 426

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSKREPVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLDKIIYERIGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+      IL++ ++ L+ QY  L + +G+ L+FT D+++A+AD
Sbjct: 301 IPEFIGRLPVIASVINLDMESLVKILSEPKNALVKQYTWLFEMDGVELEFTNDALEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|309807958|ref|ZP_07701886.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168809|gb|EFO70899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
          Length = 433

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 69  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173


>gi|257456333|ref|ZP_05621530.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           vincentii ATCC 35580]
 gi|257446419|gb|EEV21465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           vincentii ATCC 35580]
          Length = 414

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPK-NILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AKR +++A+ N ++R    PAD    ++ K N+LL+GPTG G
Sbjct: 62  TPMELKAYLDEYVIGQEKAKRVLSVAVYNHYKRIMHPPADRNAVVIEKSNVLLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLARTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL +VEG+  SV  + G          I
Sbjct: 176 GIIFIDEIDKIARKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQDMLKI 235

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          V+                          P DL     
Sbjct: 236 DTSNILFICGGAFVGLDTIIQTRVAENPMGFGADVRSAKEKNLQELYDKLIPDDLVKFGI 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+ V L  L  +D R IL + ++ +I Q++E  K + + L F + ++DA++ 
Sbjct: 296 IPELIGRLPISVPLSDLKLADLRRILVEPKNAIIKQFQESFKLDNVKLTFDDAALDAISQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A++ N+     GAR L++++E+++ D  F A  ++
Sbjct: 356 QALDQNT-----GARGLRSIVEKLMLDAMFEAPSMK 386


>gi|154249524|ref|YP_001410349.1| ATP-dependent protease ATP-binding subunit ClpX [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153460|gb|ABS60692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Fervidobacterium nodosum Rt17-B1]
          Length = 410

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I  ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   NI+L+GPTG GK
Sbjct: 61  TPSKIKQELDKYVIGQERVKKILSVAVYNHYKRVFFGKDTNDVEIEKSNIILIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++V 
Sbjct: 121 TLMARILAKILDVPFAIADATPLTEAGYVGEDVENVVLRLLEVT 164



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 109/231 (47%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G         
Sbjct: 172 QYGIIYIDEIDKIARKSPNPSITRDVSGEGVQKGLLKIVEGTIANVPPQGGRKHPYQEFI 231

Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312
            ++T +ILFI  GAF                                   HV+ P DL  
Sbjct: 232 KVDTTNILFIVGGAFDGLDEIIKRRIEGSTIGFNAPVKSKEQMRLGEILQHVT-PDDLVQ 290

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV   L  L+  D   IL + ++ ++ QYK+L + +G+ L+  E ++ A
Sbjct: 291 YGLMPEFVGRFPVIGTLDDLSVDDLVRILKEPKNAVLKQYKKLFEIDGVTLEIEEQALYA 350

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A+   +     GAR L++V E V+ DI F   DL+  + V+I  E V
Sbjct: 351 IAKEALRRGT-----GARALKSVFEEVMIDIMFDIPDLKAVEKVIITEECV 396


>gi|227551678|ref|ZP_03981727.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257884402|ref|ZP_05664055.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,501]
 gi|257887186|ref|ZP_05666839.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,141,733]
 gi|257895722|ref|ZP_05675375.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com12]
 gi|257898293|ref|ZP_05677946.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com15]
 gi|293377669|ref|ZP_06623858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium PC4.1]
 gi|293557138|ref|ZP_06675692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1039]
 gi|293571862|ref|ZP_06682878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E980]
 gi|294614149|ref|ZP_06694070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1636]
 gi|227179241|gb|EEI60213.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257820240|gb|EEV47388.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,501]
 gi|257823240|gb|EEV50172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,141,733]
 gi|257832287|gb|EEV58708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com12]
 gi|257836205|gb|EEV61279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com15]
 gi|291592999|gb|EFF24587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1636]
 gi|291600707|gb|EFF31005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1039]
 gi|291608116|gb|EFF37422.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E980]
 gi|292643669|gb|EFF61790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium PC4.1]
          Length = 416

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           P EI+  L+ Y+IGQ  AKR++A+A+ N ++R  QQ   +  D EL   NI L+GPTG G
Sbjct: 64  PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                 H+  P DLL     
Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +   L+F  +++ A+A  
Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDDTELEFEPEALRAIAKK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E ++ D+ F
Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380


>gi|312871447|ref|ZP_07731542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872315|ref|ZP_07732385.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325912860|ref|ZP_08175238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
 gi|311092138|gb|EFQ50512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093100|gb|EFQ51449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|325477853|gb|EGC80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
          Length = 433

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 69  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173


>gi|325847170|ref|ZP_08169969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480950|gb|EGC83996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 399

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD+Y+I Q+ AK+ +++++ N ++R     D  D  EL   NIL++GPTG GK
Sbjct: 59  PREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 119 TLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 162



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 53/206 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 172 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 231

Query: 292 NTDHILFIASGAF--------------------------HVS----RPADLL-----PEI 316
           +T +ILFI  GAF                           +S    R  DLL     PE 
Sbjct: 232 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLADVRTEDLLKYGLIPEF 291

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L+ L+      IL + +++L+ QY++L + +G+ L F ++++  +A  A  
Sbjct: 292 IGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDEAVREIAKKAFK 351

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402
             +     GAR L+T++E +L D+ +
Sbjct: 352 QET-----GARGLRTILEDLLLDVMY 372


>gi|293568082|ref|ZP_06679419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1071]
 gi|294617407|ref|ZP_06697041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1679]
 gi|291589164|gb|EFF20975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1071]
 gi|291596313|gb|EFF27572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1679]
          Length = 416

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           P EI+  L+ Y+IGQ  AKR++A+A+ N ++R  QQ   +  D EL   NI L+GPTG G
Sbjct: 64  PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                 H+  P DLL     
Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +   L+F  +++ A+A  
Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNTELEFEPEALRAIAKK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L++++E ++ D+ F
Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380


>gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 427

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R         Q P   R      EL   
Sbjct: 63  TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPQRPGQARAAQDDVELQKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILLVGPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A
Sbjct: 123 NILLVGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 178



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 69/216 (31%)

Query: 245 GIVFLDEFDKIV--------ARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286
           GIV++DE DKI          RD G       EGVQ+ LL ++EG+  +           
Sbjct: 188 GIVYIDEIDKIARKGDTPSPTRDVGG------EGVQQALLKIIEGTRANVTPRGGKKYNQ 241

Query: 287 -KYGSINTDHILFIASGAF----HVSR------------------------------PAD 311
            +Y  ++T ++LFI  GAF     V R                              P D
Sbjct: 242 QEYIQVDTSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGD 301

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR P+   L  L + D   ILT  ++ L  QY +L   E + L FT++S
Sbjct: 302 LVRFGMIPEFVGRLPIVATLSDLGEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKES 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A A  A+   S     GAR L+ ++E+ + DI +
Sbjct: 362 LRATAREAMRRKS-----GARGLRAILEQAMLDIMY 392


>gi|212696597|ref|ZP_03304725.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676328|gb|EEB35935.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 402

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD+Y+I Q+ AK+ +++++ N ++R     D  D  EL   NIL++GPTG GK
Sbjct: 62  PREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE II  LV  A
Sbjct: 122 TLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 53/206 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+             S +Y  +
Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 234

Query: 292 NTDHILFIASGAF--------------------------HVS----RPADLL-----PEI 316
           +T +ILFI  GAF                           +S    R  DLL     PE 
Sbjct: 235 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLADVRTEDLLKYGLIPEF 294

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+ V L+ L+      IL + +++L+ QY++L + +G+ L F ++++  +A  A  
Sbjct: 295 IGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDEAVREIAKKAFK 354

Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402
             +     GAR L+T++E +L D+ +
Sbjct: 355 QET-----GARGLRTILEDLLLDVMY 375


>gi|114321436|ref|YP_743119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311053|sp|Q0A6A8|CLPX_ALHEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114227830|gb|ABI57629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 425

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 5/102 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD +++GQ+ AK+ +++A+ N ++R  L A  R    EL   NILL+GPTG G
Sbjct: 68  PHEINQVLDEFVVGQEHAKKVLSVAVYNHYKR--LEAGSRKDEVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 126 KTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 60/227 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 180 GIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T  ILFI  GAF                                       P DL    
Sbjct: 240 DTGGILFICGGAFAGLDKVIQDRSEKGGIGFSAEIKSKDEKRSVGETLQDVEPEDLVKYG 299

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     IL+  ++ L+ QY++L + EG+ L+F ED++ A+A
Sbjct: 300 LIPEFVGRLPVVATLEELDEQALVEILSAPKNALVKQYQKLFEMEGVELEFREDALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
             A++  +     GAR L+T++E VL D  +    ++  EK VV DA
Sbjct: 360 RKAMDRKT-----GARGLRTILEHVLLDTMYDLPSMENVEKVVVDDA 401


>gi|116670949|ref|YP_831882.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter sp.
           FB24]
 gi|166214753|sp|A0JXL2|CLPX_ARTS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116611058|gb|ABK03782.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           sp. FB24]
          Length = 429

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56
           PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q     +             E+   NI
Sbjct: 64  PREIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSNI 123

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 62/229 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246

Query: 292 NTDHILFIASGAFHV------SR--------------------------PADLL-----P 314
           +T ++LFI +GAF        SR                          P DLL     P
Sbjct: 247 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGAPLNEVKNNSDSYGEVMPEDLLKFGLIP 306

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   + +L++     IL+  ++ L+ QY+++ + +G+ L F ++++D +AD A
Sbjct: 307 EFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQLDGVELLFDDEALDVIADQA 366

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419
           +   +     GAR L+ +ME VL  + F   DL  +    +VVI A+ V
Sbjct: 367 LERGT-----GARGLRAIMEEVLLPVMF---DLPSRDDIASVVITADVV 407


>gi|259500684|ref|ZP_05743586.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|259168068|gb|EEW52563.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
          Length = 433

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P +I   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 69  PIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173


>gi|257468339|ref|ZP_05632433.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062613|ref|ZP_07927098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688289|gb|EFS25124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
          Length = 416

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDELMPKNILLVGP 61
            +P+EI  +LD Y+IGQ + K+ +++A+ N ++R      Q   D   EL   N+LL+GP
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILDKNTQENEDNNVELQKSNVLLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 170



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 180 GIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKHPNQELIEI 239

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T +ILFI  GAF        SR                            P DL     
Sbjct: 240 DTANILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETDERVGEVFIKVLPEDLVRQGI 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   LK L++     ILT+ ++ ++ QYK+L   EG+ L+FT +++  +A 
Sbjct: 300 IPELVGRLPVITTLKDLDEKALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAV 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+        IGAR L+ ++E+ + ++ +
Sbjct: 360 LALERK-----IGARGLRAIIEQTMLELMY 384


>gi|225868471|ref|YP_002744419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
 gi|259491269|sp|C0MEW5|CLPX_STRS7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225701747|emb|CAW99121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
          Length = 409

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 55/215 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN  D   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +   +     GAR L++++E  + DI F     +E
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEE 387


>gi|153000123|ref|YP_001365804.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS185]
 gi|166215202|sp|A6WLQ2|CLPX_SHEB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151364741|gb|ABS07741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS185]
          Length = 426

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  A  +D  EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLK-NASPKDGIELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKEKATISETLTQVEPGDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386


>gi|309807089|ref|ZP_07701068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|309809314|ref|ZP_07703183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325912021|ref|ZP_08174423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
 gi|308166519|gb|EFO68719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|308170427|gb|EFO72451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325476206|gb|EGC79370.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
          Length = 433

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 69  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173


>gi|260889842|ref|ZP_05901105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           hofstadii F0254]
 gi|260860448|gb|EEX74948.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           hofstadii F0254]
          Length = 391

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
             P+EI ++LD YIIGQ+  K+ +++A+ N ++R   +Q   D   EL   N+LLVGPTG
Sbjct: 45  LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKSIDNDVELQKSNVLLVGPTG 104

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  A
Sbjct: 105 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 151



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 160 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 219

Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313
           INT  ILFI  GAF                                     P DL+    
Sbjct: 220 INTKDILFIVGGAFEGLEAKVKDRVNEKRVGFGLETNNTKLDDLTLFENVLPEDLIKFGL 279

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV   L  L++     ILT+ +++L+ QYK+  + E + L+F +D+I  +A 
Sbjct: 280 IPELIGRLPVITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLEFEKDAITEIAQ 339

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +A+        IGAR L++++E V+ D+ +   S    K V+I  E V
Sbjct: 340 LALKRK-----IGARGLRSIIESVMTDLMYEIPSKNNVKKVIITKEAV 382


>gi|225870476|ref|YP_002746423.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
 gi|254763864|sp|C0M9R7|CLPX_STRE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225699880|emb|CAW93774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
          Length = 409

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 55/215 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMVQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN  D   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +   +     GAR L++++E  + DI F     +E
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEE 387


>gi|262369922|ref|ZP_06063249.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
 gi|262314961|gb|EEY96001.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
          Length = 438

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R +        D   E+   NILLVGPTG
Sbjct: 65  PHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKATHGGHKHDDAVEIAKSNILLVGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +ARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 125 SGKTLLAQTMARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 171



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T +ILFI  GAF                     V +  +                    
Sbjct: 241 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTAEVKKKDEGKKLSDLFRQVEATDLVKFG 300

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 301 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQHLFDMENVDLVFEDSALRAVA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A++ N+     GAR L++++E  L
Sbjct: 361 KKALDRNT-----GARGLRSILENTL 381


>gi|53802552|ref|YP_112778.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|61211760|sp|Q60C67|CLPX1_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1
 gi|53756313|gb|AAU90604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 422

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+E+ + LD+Y+IGQ  AKR +++A+ N ++R +      D EL   N+LL+GPTG GKT
Sbjct: 67  PKEMKAILDQYVIGQDKAKRILSVAVYNHYKRLKARTFRNDVELAKSNVLLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 LLAETLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLL 166



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 63/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 179 GIVYIDEIDKISRKADSPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311
           NT +ILFI  GAF               +   A+                          
Sbjct: 239 NTANILFICGGAFAGLDKTIRSRSERSGIGFSAEVKSKEENTNVGEILAGVEAEDLIRYG 298

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L+++    IL + ++ L+ QY  L + EG  L+   +++ A+A
Sbjct: 299 LIPEFIGRLPVVATLEELDEAALVRILIEPKNALVKQYARLFEMEGCELEILPEALGAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
             A+   +     GAR L+T++E  L D  +   SA D+ +  VV+DA+ +R
Sbjct: 359 RRAMERKT-----GARGLRTIIEHALLDTMYELPSAEDVGK--VVVDAKVIR 403


>gi|313891580|ref|ZP_07825190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           microaerophilus UPII 345-E]
 gi|313120039|gb|EFR43221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           microaerophilus UPII 345-E]
          Length = 411

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T  ILFI  GAF                                  ++  P DLL    
Sbjct: 238 DTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT  ++ LI QYK+L+K + + L+F E +I A+A 
Sbjct: 298 IPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E++++ + +   ++++    I  E V +H
Sbjct: 358 KAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVH 402



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI   +D+Y+I Q++AK A+A+A+ N ++R +   D  +   EL   NI+++GPTG 
Sbjct: 63  TPVEIKKYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAA 168


>gi|297566269|ref|YP_003685241.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           silvanus DSM 9946]
 gi|296850718|gb|ADH63733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           silvanus DSM 9946]
          Length = 399

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI S LD+Y+IGQ+  KR +++A+ N ++R   P     E+   NILL+GPTG GKT 
Sbjct: 61  PAEIKSFLDQYVIGQEVPKRVLSVAVYNHYKRLMHP---EAEIQKSNILLIGPTGTGKTL 117

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++  LAR+   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 118 MAETLARMLDVPFAIADATTLTEAGYVGEDVENVILRLLQAA 159



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 54/216 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GI+++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 169 GIIYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFVQ 227

Query: 291 INTDHILFIASGAFH-VSR--------------------------PADL-----LPEIQG 318
           +NT +ILFI  GAF  + R                          P DL     +PE  G
Sbjct: 228 VNTKNILFILGGAFEGLDRILKARVDQHPIGFTKAKFNPEKLEVIPEDLVRYGLIPEFVG 287

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV V L +L++     ILT+ ++ L+ QY+ELM+ EGI L FT   +  +A  A+   
Sbjct: 288 RVPVVVGLDALDEESLVRILTEPKNALVRQYQELMRMEGIELKFTPAVLREVARRALKRG 347

Query: 379 STVGDIGARRLQTVMERVLEDISFSA--SDLQEKTV 412
           +     GAR L+ V+E+ + D+ + A  S + E TV
Sbjct: 348 T-----GARGLRAVIEKAMVDLMYEAPGSGVWEITV 378


>gi|195978196|ref|YP_002123440.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|238689818|sp|B4U360|CLPX_STREM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|195974901|gb|ACG62427.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 409

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN  D   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKSALEAIAGRA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E  + DI F     +E T V
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEEVTKV 391


>gi|170781896|ref|YP_001710228.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|189082488|sp|B0RAS4|CLPX_CLAMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169156464|emb|CAQ01612.1| ATP dependent Clp Protease ATP binding subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 426

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60
           P+EI   LD Y+IGQ+ AKRA+++A+ N ++R +      PA       E+   NILL+G
Sbjct: 66  PKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAKTVGDEIEIAKSNILLIG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314
           +T ++LFI +GAF      +S+                           P DL     +P
Sbjct: 245 DTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDLNADVFGEVLPEDLHKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT   + L+ QY+ + + +G+ L+F + +++++AD+A
Sbjct: 305 EFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFELDGVELEFEQGALESIADLA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           V L  T    GAR L+ ++E VL  I F   SD +   VVI  E V
Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMFDIPSDDEVGRVVITRESV 405


>gi|315653481|ref|ZP_07906402.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
 gi|315489172|gb|EFU78813.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
          Length = 433

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSADALNAIATMA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 69  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173


>gi|309804151|ref|ZP_07698229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|312875511|ref|ZP_07735514.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
 gi|308163734|gb|EFO66003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|311089022|gb|EFQ47463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
          Length = 429

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 65  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169


>gi|294629344|ref|ZP_06707904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. e14]
 gi|292832677|gb|EFF91026.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. e14]
          Length = 428

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           PREI   LD Y++GQ+ AK+++++A+ N ++R Q   +          EL   NILL+GP
Sbjct: 64  PREIYEFLDGYVVGQEAAKKSLSVAVYNHYKRVQAGENGGGQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFHVSR----------------------------------PADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIEGRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VV+ A+ V  ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVVTADVVHSNV 408


>gi|255019391|ref|ZP_05291500.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Acidithiobacillus caldus ATCC 51756]
 gi|254971163|gb|EET28616.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Acidithiobacillus caldus ATCC 51756]
          Length = 427

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD---ELMPKNILLVGPTGV 64
           P EI   LD Y+IGQ  AK+ +++A+ N ++R +      RD   EL   NILL+GPTG 
Sbjct: 67  PMEIRKTLDEYVIGQDAAKKVLSVAVYNHYKRLEHGGKGGRDNDVELDKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 GKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLL 169



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 58/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312
           +T HILFI  GAF                     + R               P DL    
Sbjct: 242 DTRHILFICGGAFAGLEKAVASRVEKGGMGFNAQIKRTDKQNSSNLMMENLEPEDLVRYG 301

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+  ++L+ QY++L   EG+ L+F  +++ A+A
Sbjct: 302 LIPEFVGRLPVIALLEELDEDALVSILTEPRNSLVKQYQKLFALEGVTLEFRPEALRAIA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
             A+   +     GAR L++++E++L D  +    L
Sbjct: 362 KKALTRKT-----GARGLRSILEQILLDSMYELPSL 392


>gi|219849053|ref|YP_002463486.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus
           aggregans DSM 9485]
 gi|219543312|gb|ACL25050.1| Sigma 54 interacting domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 429

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++   LD+Y+IGQ  AK A+A+A+ N ++R +  A + D E+   NILL+GPTG GK
Sbjct: 72  TPRKLRERLDQYVIGQDRAKVALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 132 TLLAQTMARILDVPFAIADATALTEAGYVGEDVENILLRLIQAA 175



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG                +Y   
Sbjct: 185 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPF 244

Query: 292 NTDHILFIASGAFH----------------------VSR------------PADLL---- 313
           +T ++LFI  GAF                       VS             P DL+    
Sbjct: 245 DTTNVLFICGGAFEGITKIIAKRLRGKQLIGFGTNPVSPLEEEGALLAQIIPDDLMHFGF 304

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L+ L++     ILT+  + +I QY++L   +   L+FT DS++A+ D
Sbjct: 305 IPEFVGRLPVIVALEPLSREAMLRILTEPRNAIIKQYQKLFALDHCELEFTPDSLEAIVD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A++  +     GAR L++++E VL D+ F     +     +++AE ++
Sbjct: 365 RAMSART-----GARALRSIVEEVLLDVMFELPSQEHIGRCIVNAEVIQ 408


>gi|111115441|ref|YP_710059.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia afzelii
           PKo]
 gi|216263331|ref|ZP_03435326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           afzelii ACA-1]
 gi|110890715|gb|ABH01883.1| ATP-dependent Clp protease, subunit X [Borrelia afzelii PKo]
 gi|215980175|gb|EEC20996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           afzelii ACA-1]
          Length = 430

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRDDTSLKYLEMEDLIKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ L+K D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 297 EFVGRLPVHSYLEKLSKEDLIKILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 397



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167


>gi|62185491|ref|YP_220276.1| ATP-dependent protease ATP-binding subunit [Chlamydophila abortus
           S26/3]
 gi|329943258|ref|ZP_08292032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci Cal10]
 gi|332287837|ref|YP_004422738.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
 gi|81312361|sp|Q5L4W6|CLPX_CHLAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62148558|emb|CAH64329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila
           abortus S26/3]
 gi|313848409|emb|CBY17413.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila
           psittaci RD1]
 gi|325506574|gb|ADZ18212.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
 gi|328814805|gb|EGF84795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci Cal10]
 gi|328915098|gb|AEB55931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
          Length = 421

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R + L  +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG++ +            +Y 
Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLIAF 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E + L F ++++ A+
Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEENVKLIFEKEALYAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386


>gi|312885608|ref|ZP_07745244.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Mucilaginibacter paludis DSM 18603]
 gi|311301920|gb|EFQ78953.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K  ++
Sbjct: 176 GIVYIDEVDKIARKSDNPSITRDVSGEGVQQALLKILEGTMVNVPPQGGRKHPDQKMITV 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 236 NTSNILFICGGAFDGIEKKIANRLRTQTVGYKFKNEDHEVDMKNLYKYITPQDLKAFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L++     ILT+ +++L+ QYK+L + EGI LDF  +++  + D 
Sbjct: 296 PELIGRLPVLTYLNPLDREALANILTEPKNSLLKQYKKLFEYEGISLDFEPETLSFIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A+        +GAR L+++ E ++ D  F   S  D++   V +D
Sbjct: 356 AMEFK-----LGARGLRSICEAIMIDAMFEFPSKKDVKSLVVTLD 395



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI + LD+Y+IGQ DAK+ +++A+ N ++R     D  + E+   NI++VG TG G
Sbjct: 62  LKPFEIKAHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVDKDEVEIEKSNIIMVGETGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166


>gi|309805711|ref|ZP_07699751.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|329921321|ref|ZP_08277759.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
 gi|308164964|gb|EFO67207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|328934613|gb|EGG31117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
          Length = 429

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 65  PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169


>gi|42527180|ref|NP_972278.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema
           denticola ATCC 35405]
 gi|61211559|sp|Q73M37|CLPX_TREDE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41817604|gb|AAS12189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           denticola ATCC 35405]
          Length = 415

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 1/111 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66
           +P+E+   LD Y+IGQ+ AKR +++A+ N ++R   P    D ++ K N+LL+GPTG GK
Sbjct: 63  TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++E+
Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEA 173



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+S S       K+ +     I
Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTSASVPPQGGRKHPNQDMLKI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                    VS P DL    
Sbjct: 236 DTTNILFICGGAFVGLDKIVEARISTKPIGFGAEVKKLSEKNLTELYDQVS-PDDLVKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P++V L  L K D   IL + ++ +I Q++   K + + L F +D+I A+A
Sbjct: 295 LIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDAITAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
             A++ N+     GAR L++++E+++ D  F A  ++  K ++I+ + +
Sbjct: 355 QQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398


>gi|302671761|ref|YP_003831721.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396234|gb|ADL35139.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
           proteoclasticus B316]
          Length = 422

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63
             P EI + LD Y+IGQ +AK+ +A+++ N ++R   P   D  D EL   NI+++GPTG
Sbjct: 64  LKPAEIRNFLDEYVIGQDEAKKVLAVSVYNHYKRVLAPKNDDKNDVELQKSNIIMIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 SGKTYLAQTLAKIINVPFAIADATTLTEAGYVGEDVENILLKLIQNA 170



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 59/228 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289
            YGIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  SV  + G         
Sbjct: 178 QYGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPHQELI 237

Query: 290 SINTDHILFIASGAF---------HVSR-------------------------PADL--- 312
            I+T +ILFI  GAF          + R                         P DL   
Sbjct: 238 QIDTSNILFICGGAFDGLDKIVEARLDRNSIGFNAEIADKSEREIGEVLKEVTPQDLVKF 297

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR P+ V L+ L+K     ILT+ ++ L+ QY++L   + + L F ++++  +
Sbjct: 298 GLIPEFVGRVPITVTLEGLSKEALMRILTEPKNALVKQYQKLFDFDDVKLTFEDEAVHKI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A +A    +     GAR L+++ME+ + D+ +   + D   + V+ DA
Sbjct: 358 AQMAYERET-----GARGLRSIMEKTMMDVMYEIPSDDTISECVITDA 400


>gi|302035646|ref|YP_003795968.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
 gi|300603710|emb|CBK40041.1| ATP-dependent Clp protease, ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
          Length = 418

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 6/106 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI   LD+Y++GQ  AKR +++A+ N ++R  + A  +D    EL   NIL++GPTG 
Sbjct: 64  PAEIKHHLDQYVVGQDRAKRILSVAVHNHYKR--ISAKEKDVDDVELQKGNILVIGPTGT 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA+    PF   + T  TE GYVG +VE II  L+  A
Sbjct: 122 GKTLLAQTLAKFLDVPFTLADATTLTEAGYVGEDVENIILKLLQAA 167



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 60/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 177 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQEFIQV 236

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           NT +ILFI  GAF                                   HV +P DLL   
Sbjct: 237 NTSNILFICGGAFVGLEHIIEQRMNRKSMGFGAEVRGRNDIRLGELLPHV-QPEDLLKYG 295

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L++     ILT+  + L  QY++L+  E + L FTE ++ A+A
Sbjct: 296 LIPEFIGRLPVVATLDELDEQALIRILTEPRNALTKQYEKLLSFEKVKLRFTEGALSAVA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVI 414
             A    +     GAR L++++E  + D+ + A S  Q K VVI
Sbjct: 356 RKAFTQKT-----GARGLRSILEEAMLDVMYDAPSQKQIKEVVI 394


>gi|260578312|ref|ZP_05846228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603614|gb|EEW16875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
          Length = 424

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60
           P  I   LD Y+IGQ +AKR +A+A+ N ++R Q+         +D   EL   NIL++G
Sbjct: 62  PAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNATARRSDDEVELAKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 56/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++   
Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T ++LFI +GAF                                     P DL     +
Sbjct: 241 DTKNVLFIVAGAFSGLEKVISERRGKKGLGFGAEISAKSEEDPNPFQFVEPEDLVKFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L   +G+ L F ++++  +A  
Sbjct: 301 PELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVRLTFEDEALREIAQK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A+       + GAR L+++ME +L    FS  + +E   VI
Sbjct: 361 AL-----ARETGARGLRSIMETLLLPTMFSIPEDEETGEVI 396


>gi|254821425|ref|ZP_05226426.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           intracellulare ATCC 13950]
          Length = 426

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYLRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|325474231|gb|EGC77419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Treponema
           denticola F0402]
          Length = 415

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 1/111 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66
           +P+E+   LD Y+IGQ+ AKR +++A+ N ++R   P    D ++ K N+LL+GPTG GK
Sbjct: 63  TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++E+
Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEA 173



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+S S       K+ +     I
Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTSASVPPQGGRKHPNQDMLKI 235

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                    VS P DL    
Sbjct: 236 DTTNILFICGGAFVGLDKIVEARISTKPIGFGAEVKKLSEKNLTELYDQVS-PDDLVKFG 294

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P++V L  L K D   IL + ++ +I Q++   K + + L F +D+I A+A
Sbjct: 295 LIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDAITAIA 354

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
             A++ N+     GAR L++++E+++ D  F A  ++  K ++I+ + +
Sbjct: 355 QQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398


>gi|302191374|ref|ZP_07267628.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           iners AB-1]
          Length = 429

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314
           +T +ILFI  GAF                                 H++        L+P
Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ L+F+ D+++A+A +A
Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +N N     +GAR L+++ME  + DI +     +  + VI  E V
Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P +I   LD Y++GQ  AK+ +++A+ N ++R  Q+  D     EL   NI L+GPTG G
Sbjct: 65  PIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169


>gi|257140629|ref|ZP_05588891.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
          Length = 107

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 70/105 (66%)

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL  T+++L+ QY+ L+ TE + L+F +D I  LA++A  +N    +IGARRL TV
Sbjct: 3   DFEAILVATDASLVKQYQALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTV 62

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE++SF+A +   ++V IDA YV   +G+   + D+  ++L
Sbjct: 63  IEKLLEEVSFAAGNHAGQSVTIDAAYVDRALGEVSKDEDLSRYVL 107


>gi|78485522|ref|YP_391447.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363808|gb|ABB41773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thiomicrospira
           crunogena XCL-2]
          Length = 416

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI   L+ Y+IGQ  AK+ +++A+ N +RR +     +DE  L   NILL+GPTG G
Sbjct: 60  TPHEISQILNDYVIGQYQAKKVLSVAVYNHYRRLE-SGHQKDEVELNKSNILLIGPTGSG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LARL   PF   + T  TE GYVG +VE I+  L+    N   ++ R
Sbjct: 119 KTLLAQTLARLLDVPFAIADATTLTEAGYVGEDVESIVLKLLQRCDNDAEKAER 172



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  ++  + G          +
Sbjct: 173 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPNQDMIQV 232

Query: 292 NTDHILFIASGAFH------------------------------VSR------PADL--- 312
           +T  ILFI  GAF                               VS       P DL   
Sbjct: 233 DTSKILFIVGGAFEGLDKIIEQRTEKNIGIGFSAEVKSQDKKATVSEKFQNIEPEDLVKF 292

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR P+   L+ L++     ILT+ ++ L+ QY+++ + EG+ L F +D++  +
Sbjct: 293 GLIPEFVGRLPILAALEELDEKALIQILTEPKNALVKQYQKMFELEGVELQFRKDALSEI 352

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
           A++A+   +     GAR L++++E+ L D  +    ++  EK V+  A
Sbjct: 353 ANLAIERKT-----GARGLRSILEKTLLDTMYDLPSMKNVEKVVINKA 395


>gi|322387323|ref|ZP_08060933.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141852|gb|EFX37347.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
          Length = 410

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   +     GAR L++++E  + D+ F     +  KTV I  E V
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399


>gi|289422715|ref|ZP_06424555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
 gi|289156894|gb|EFD05519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
          Length = 422

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P+E++  L+ Y+IGQ  AK+A+++A+ N ++R   +    D+  E+   NILL+GPTG G
Sbjct: 65  PKEMMEILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDV--EVQKSNILLLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE II  LV  A
Sbjct: 123 KTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 167



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPSGGRKHPHQEFLKV 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      V +                             P DLL    
Sbjct: 237 DTTNILFILGGAFDGIEKIVQKRGKEKSLGFGAKIESKNDMDIGKLYSQVVPDDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT+ ++ L  QY +L + +   L+F ED++ A+A 
Sbjct: 297 IPEFIGRVPVLATLDLLDEESLVKILTEPKNALTKQYAKLFEYDDAKLEFEEDALRAVAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
            A+   +     GAR L++++E  L D+ +    L+  EK ++
Sbjct: 357 KAIERKT-----GARGLRSIIEHALMDVMYEVPSLENVEKVII 394


>gi|68535618|ref|YP_250323.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           jeikeium K411]
 gi|68263217|emb|CAI36705.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           jeikeium K411]
          Length = 424

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60
           P  I   LD Y+IGQ +AKR +A+A+ N ++R Q+         +D   EL   NIL++G
Sbjct: 62  PAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNAAARRSDDEVELAKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 56/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G           
Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T ++LFI +GAF                                     P DL     +
Sbjct: 241 DTKNVLFIVAGAFSGLEKVISERRGKKGLGFGAEISAKSEEDPNPFQFVEPEDLVKFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L   +G+ L F ++++  +A  
Sbjct: 301 PELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVRLTFEDEALREIAQK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A+       + GAR L+++ME +L    F+  + +E   VI
Sbjct: 361 AL-----ARETGARGLRSIMETLLLPTMFAIPEDEETGEVI 396


>gi|41408376|ref|NP_961212.1| ATP-dependent protease ATP-binding subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118466554|ref|YP_880943.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           avium 104]
 gi|254774532|ref|ZP_05216048.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|61211562|sp|Q73XN1|CLPX_MYCPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214785|sp|A0QDF5|CLPX_MYCA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41396732|gb|AAS04595.1| ClpX [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167841|gb|ABK68738.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           avium 104]
          Length = 426

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L++     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|329121862|ref|ZP_08250477.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
           micraerophilus DSM 19965]
 gi|327467800|gb|EGF13292.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
           micraerophilus DSM 19965]
          Length = 411

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 178 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T  ILFI  GAF                                  ++  P DLL    
Sbjct: 238 DTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLLKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L  L++     ILT  ++ LI QYK+L+K + + L+F E +I A+A 
Sbjct: 298 IPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAK 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E++++ + +   ++++    I  E V +H
Sbjct: 358 KAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVH 402



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI   +D+Y+I Q++AK A+A+A+ N ++R +   D  +   EL   NI+++GPTG 
Sbjct: 63  TPVEIKEYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAA 168


>gi|227509447|ref|ZP_03939496.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191159|gb|EEI71226.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 418

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R  ++ +D  D  EL   NI ++GPTG
Sbjct: 66  LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 172



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 62/233 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 241

Query: 292 NTDHILFIASGAF--------------------------HVSR--------PADLL---- 313
           +T +ILFI  GAF                          +V+         P D+L    
Sbjct: 242 DTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKYVNSKNIMQSVIPEDMLKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++ D   ILT+ ++ L+ QY++L++ +G  L+F   ++  +A 
Sbjct: 302 IPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAELEFQPAALQKMAQ 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
           +A++ N+     GAR L++++E V+ DI F   S +D+ +  V+I  E V  H
Sbjct: 362 LAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSK--VIITPETVTNH 407


>gi|29831992|ref|NP_826626.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           avermitilis MA-4680]
 gi|46576506|sp|Q820F8|CLPX_STRAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29609110|dbj|BAC73161.1| putative ATP-dependent Clp Protease ATP binding subunit
           [Streptomyces avermitilis MA-4680]
          Length = 428

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q   +          EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VVI A+ V  ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNV 408


>gi|227512156|ref|ZP_03942205.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227524114|ref|ZP_03954163.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
 gi|227084550|gb|EEI19862.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227088745|gb|EEI24057.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
          Length = 418

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R  ++ +D  D  EL   NI ++GPTG
Sbjct: 66  LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 172



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 62/233 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 241

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312
           +T +ILFI  GAF        SR  D                                 L
Sbjct: 242 DTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKNVNSKNIMQSVIPEDMLKFGL 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L++ D   ILT+ ++ L+ QY++L++ +G  L+F   ++  +A 
Sbjct: 302 IPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAELEFQPAALQKMAQ 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
           +A++ N+     GAR L++++E V+ DI F   S +D+ +  V+I  E V  H
Sbjct: 362 LAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSK--VIITPETVTNH 407


>gi|154686958|ref|YP_001422119.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens FZB42]
 gi|166214755|sp|A7Z7B2|CLPX_BACA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154352809|gb|ABS74888.1| ClpX [Bacillus amyloliquefaciens FZB42]
          Length = 420

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + L+F ++++  +A  
Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEDEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   + D  EK V     V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409


>gi|168043143|ref|XP_001774045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674591|gb|EDQ61097.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 392

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 7/110 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD--ELMPKNILLVG 60
           +PREI   LD++++GQ+ AK+ +++A+ N ++R      Q  ++  D  EL   N+LL+G
Sbjct: 12  TPREICQALDKFVVGQERAKKILSVAVYNHYKRIYHESVQKGSEEDDVVELEKSNVLLMG 71

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR    PFI  + T  T+ GYVG +VE I+  L+ V+
Sbjct: 72  PTGSGKTLLAKTLARFVNVPFIIADATTLTQAGYVGEDVESILYKLLMVS 121



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 64/221 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 131 GIVYIDEVDKITKKAESVSISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDHIQI 190

Query: 292 NTDHILFIASGAF------HVSRPAD---------------------------------- 311
           +T  ILFI  GAF         R  D                                  
Sbjct: 191 DTKDILFICGGAFIELAKTVAERKQDSSIGFGSPVRASMRGNKLTDSAITSSLLEMVESS 250

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +LN+     +LT+  + L  QYK++     + L +T+ 
Sbjct: 251 DLISYGLIPEFIGRFPVLVSLSALNEDQLVQVLTEPRNALGKQYKKMFSMNNVKLHYTDG 310

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           ++  +A  A+     V + GAR L+++ME +L +  +   D
Sbjct: 311 ALRRIAQKAI-----VKNTGARGLRSIMETLLTEAMYQVPD 346


>gi|309388895|gb|ADO76775.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Halanaerobium
           praevalens DSM 2228]
          Length = 423

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NI+++GPTG GKT
Sbjct: 67  PKEIKEYLDQYVIGQERAKKSLSVAVYNHYKRVNSNLMIDDVELQKSNIMMIGPTGCGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   P    + T  TE GYVG +VE I+  L+  A
Sbjct: 127 LMAQTLAKIIDVPIAITDATSLTEAGYVGEDVENILLKLIQAA 169



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 60/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFIA GAF                                    H+ +P DLL  
Sbjct: 239 DTTNILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTQAEDENIGDTLKHI-QPQDLLHY 297

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV+V L  L   D   I+ +  + LI QY++    + I L+FT++++ ++
Sbjct: 298 GLIPEFIGRMPVQVTLDQLEAEDMVRIMKEPRNALIKQYEKFFAMDEIELEFTDEALKSI 357

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++ N+     GAR L++V+E  + DI +
Sbjct: 358 AAKALDRNT-----GARGLRSVVENAVLDIMY 384


>gi|187735545|ref|YP_001877657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425597|gb|ACD04876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 456

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 7/110 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + L++Y+IGQ  AK+ +++A+ N + R +  A + D       E+   NILL G
Sbjct: 101 TPEEMCATLNQYVIGQDYAKKVLSVAVYNHYMRLRQSAVMLDDKSLDDVEIEKSNILLAG 160

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 161 PTGSGKTLLAKTLAKMLNVPFCIVDATTLTEAGYVGEDVENIILRLLQAA 210



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 75/246 (30%)

Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286
           GI+++DE DKI        V RD      VS EGVQ+ LL ++EG+  +           
Sbjct: 220 GIIYVDEIDKIGRKTQNVSVTRD------VSGEGVQQALLKIIEGTICNVPPTGGRKHPQ 273

Query: 287 -KYGSINTDHILFIASGAF------------------------------------HVSRP 309
            +Y  +NT+ ILFI  GAF                                      + P
Sbjct: 274 QEYIRVNTEKILFIVGGAFVGLEDIIRKRLGATQMGFGAITEQRDRKEYSEEEILAQAMP 333

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+   L  L++S    +LT+ ++ L+ QY +L+   G  LD   
Sbjct: 334 EDLFSFGMIPEFVGRLPIFCPLSKLDESQLVRLLTEPKNALVKQYSKLLAMYGAKLDVLP 393

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L+++ E ++ D+ +    ++   TV I  E V    
Sbjct: 394 DALKAMAAEAMKRGT-----GARALRSIFETLMLDVMYKVPSMKNADTVTITRETV---T 445

Query: 424 GDFPSE 429
           G+ P++
Sbjct: 446 GNKPAQ 451


>gi|120599413|ref|YP_963987.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           W3-18-1]
 gi|146292591|ref|YP_001183015.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
 gi|166215204|sp|A4Y5I3|CLPX_SHEPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215206|sp|A1RL88|CLPX_SHESW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120559506|gb|ABM25433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. W3-18-1]
 gi|145564281|gb|ABP75216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
          Length = 426

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386


>gi|309790147|ref|ZP_07684719.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6]
 gi|308227732|gb|EFO81388.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6]
          Length = 431

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++  +LD+Y+IGQ  AK  +++A+ N ++R +  A + D EL   NILL+GPTG GK
Sbjct: 73  TPRKLREKLDQYVIGQDRAKIVLSVAVYNHYKRIKAGAKVDDVELSKSNILLLGPTGSGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 133 TLLAQTLARILDVPFAIADATALTEAGYVGEDVENILLRLIQAA 176



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG                +Y S 
Sbjct: 186 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYISF 245

Query: 292 NTDHILFIASGAFH--------------------------VSRPADLL------------ 313
           +T ++LFI  GAF                           +S  A LL            
Sbjct: 246 DTTNVLFICGGAFEGVEEIISQRMRGKSTIGFTSQHIHEDLSEHARLLSQLNQDDLLHYG 305

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L+ L       ILT+  + ++ QY++L+  + + L+ T D++DA+ 
Sbjct: 306 FIPEFIGRVPVIVALEPLTTQAMLRILTEPRNAVVKQYQKLLALDHVDLEITPDALDAIV 365

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVR 420
           + A+   +     GAR L++++E VL D+ +     QE     +I+AE V+
Sbjct: 366 EQAMQAKT-----GARALRSIVEAVLLDVMYEVP-AQEHIGRCIINAEVVQ 410


>gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           cf. saccharolyticum K10]
          Length = 434

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 63/104 (60%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ++AK+ +++A+ N ++R         +L   NIL++GPTG GK
Sbjct: 66  LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 126 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAA 169



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 178 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 237

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                      P DL    
Sbjct: 238 IDTTNILFICGGAFDGLEKIVENRLGAGSIGFEVEIADRQNSDIDEMLAQVMPEDLTKFG 297

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V LKSLN+     IL+  ++ ++ QY+ L   +G+ L+FT+D++ ++A
Sbjct: 298 LIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV   +     GAR L+ +ME V+ DI +
Sbjct: 358 HMAVERKT-----GARGLRAIMESVMMDIMY 383


>gi|224534186|ref|ZP_03674765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
 gi|224514547|gb|EEF84862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
          Length = 435

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 241

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ L+K D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 302 EFVGRLPVHSYLEKLSKEDLMRILVDPQNSIVKQYYYMFKMDNVELVFEKDALESIVDEA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKESV 402



 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R  +    D   E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLLAKTLASEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172


>gi|304311291|ref|YP_003810889.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
 gi|301797024|emb|CBL45237.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
          Length = 434

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 8/108 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDE----LMPKNILLV 59
           SP+EI + LD Y+IGQ  AK+ +A+A+ N ++R        A  R E    L   NILL+
Sbjct: 69  SPKEIKTILDDYVIGQDRAKKILAVAVYNHYKRIRSGNAKSAKGRGEGDIELSKSNILLI 128

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 GPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 176



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 189 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 248

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 249 DTTNILFICGGAFAGLEKVIQNRSTKSGIGFVASVKSKEDNINVGDTLKEVEPEDLVKFG 308

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+   L+ L+++    ILT+  ++L  QY++L + E I LDF  D++ A+A
Sbjct: 309 LIPEFVGRLPIIATLEELDEAALVRILTEPRNSLTKQYQKLFEMEDIELDFRTDALHAVA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
             A+   +     GAR L++++E VL D  + A  L+  T VV+D   ++
Sbjct: 369 KKALERKT-----GARGLRSILENVLLDTMYDAPSLEGVTKVVVDEAVIK 413


>gi|115396830|ref|XP_001214054.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus
           terreus NIH2624]
 gi|114193623|gb|EAU35323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus
           terreus NIH2624]
          Length = 602

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 162/408 (39%), Gaps = 76/408 (18%)

Query: 45  ADLRD----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           A+L D    +L   NILL+GP+GVGKT +++ LAR+   PF   + T FT+ GY+G + E
Sbjct: 160 AELNDSSPLQLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSISDCTPFTQAGYIGEDAE 219

Query: 101 QIIRDLVDVAINIVRESRR-----DEVREQASI-----------NAEERILDALVGKTAT 144
             +  L+  A   V ++ R     DEV + A+              ++ +L  + G T  
Sbjct: 220 VCVHKLLAAANYDVEQAERGIIVLDEVDKIAAAKVTHGKDVSGEGVQQALLKIIEGTTVQ 279

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
              ++  +   R G   +         ++S + N   P      +    E+++      R
Sbjct: 280 VQAKQE-KSAPRLGGTPNS------FPSNSPLGNPPYPPSGGGNMPQKGEVYNV-----R 327

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
              I       +  L +      + MD + R SI     +G         + +  + N  
Sbjct: 328 TDNILFIFSGAFVGLHK------VIMDRISRGSI----GFG-------QPVRSPTTSNEG 370

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS-------------RPAD 311
                      +P++ GS     Y      H+ F  S A   S              P D
Sbjct: 371 SAEARASNHQPIPILPGSEEEALY----KRHLPFFTSAAAESSDGEPPYFNALDLLNPTD 426

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR PV   L +L +     ILT+  ++LI QY  L    GI L FT  +
Sbjct: 427 LQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSLIAQYTTLFSLSGIELRFTTPA 486

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +  +A  A  + +     GAR L+T +E +L D  F       K V++
Sbjct: 487 LHKIAGNAFTMGT-----GARALRTELETILSDAMFETPGSSVKFVLV 529


>gi|327334168|gb|EGE75882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL097PA1]
          Length = 429

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDE-----LMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q    +P   R E     L   NIL++
Sbjct: 65  PRELCEFLDTWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|261253458|ref|ZP_05946031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
 gi|260936849|gb|EEX92838.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
          Length = 427

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 14/107 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PR+I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+G
Sbjct: 68  PRDIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFAAEVRSKDETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL +  +    + +   VVID   ++
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVIDESVIK 406


>gi|239917501|ref|YP_002957059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
 gi|259491263|sp|C5CAX2|CLPX_MICLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239838708|gb|ACS30505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 432

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 15/118 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK--------- 54
           +P+EI   L+ ++IGQ+ AKR++A+A+ N ++R + P     DL D L  +         
Sbjct: 63  TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122

Query: 55  --NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             NIL+VGPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 180



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 190 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 249

Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314
           +T ++LFI +GAF                       H+          RP DLL     P
Sbjct: 250 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   ++ L       +LT+ ++ L+ QY+++   +G+ L+F +D++DA+   A
Sbjct: 310 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
               +     GAR L+++ME VL+ + F   S SD+   TVVI  + VR
Sbjct: 370 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGDVVR 411


>gi|15605438|ref|NP_220224.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis D/UW-3/CX]
 gi|255311534|ref|ZP_05354104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 6276]
 gi|255317835|ref|ZP_05359081.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 6276s]
 gi|255349097|ref|ZP_05381104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 70]
 gi|255503634|ref|ZP_05382024.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 70s]
 gi|255507313|ref|ZP_05382952.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis D(s)2923]
 gi|6831516|sp|O84711|CLPX_CHLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3329160|gb|AAC68300.1| CLP Protease ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525749|emb|CBJ15230.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis Sweden2]
 gi|296435321|gb|ADH17499.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis E/150]
 gi|296436249|gb|ADH18423.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/9768]
 gi|296437178|gb|ADH19348.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/11222]
 gi|296438109|gb|ADH20270.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/11074]
 gi|296439038|gb|ADH21191.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis E/11023]
 gi|297140610|gb|ADH97368.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/9301]
 gi|297748836|gb|ADI51382.1| hypothetical protein CTDEC_0705 [Chlamydia trachomatis D-EC]
 gi|297749716|gb|ADI52394.1| hypothetical protein CTDLC_0705 [Chlamydia trachomatis D-LC]
          Length = 419

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R + L  D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238

Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312
            +NT++ILFI  GAF                  S   DL                     
Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++++ A+A
Sbjct: 299 MIPEFIGRFNCVVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L  ++E +L D+ F
Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384


>gi|307703276|ref|ZP_07640221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
 gi|307623142|gb|EFO02134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
          Length = 401

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|307151648|ref|YP_003887032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7822]
 gi|306981876|gb|ADN13757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7822]
          Length = 446

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PREI   LD Y+IGQ +AK+ +++A+ N ++R       R          EL   NILL+
Sbjct: 82  PREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRLSDIQSKRSGTGSIDDPIELQKSNILLM 141

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 GPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R ADLL            
Sbjct: 262 DTSNILFICGGAFVGLDKIVEQRLGKKSMGFIQPGDGNAKDKRTADLLKVIEPDDLVKFG 321

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L++     ILT   + L+ QY++L+K + + L+F  D++ A+A
Sbjct: 322 MIPEFVGRIPVMASLDPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVRAIA 381

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ ++ +
Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLEVMY 407


>gi|328554439|gb|AEB24931.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens TA208]
 gi|328912843|gb|AEB64439.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens LL3]
          Length = 420

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + LDF ++++  +A  
Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   + D  EK V     V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409


>gi|302545418|ref|ZP_07297760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463036|gb|EFL26129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           himastatinicus ATCC 53653]
          Length = 428

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGPT 62
           PREI   L+ Y++GQ+ AK+++++A+ N ++R Q         D   EL   NILL+GPT
Sbjct: 64  PREIYEFLEGYVVGQEAAKKSLSVAVYNHYKRVQAGENGSHSKDDGIELAKSNILLLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T ++LFI  GAF        SR                            P DL     
Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF   +++A+AD
Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+ L  T    GAR L+ ++E VL
Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380


>gi|57168395|ref|ZP_00367529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           coli RM2228]
 gi|305432811|ref|ZP_07401969.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli
           JV20]
 gi|57020203|gb|EAL56877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           coli RM2228]
 gi|304443965|gb|EFM36620.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli
           JV20]
          Length = 407

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R    ++L+D   EL   NILL+GPT
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKSELQDDDVELFKSNILLIGPT 118

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 53/224 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 235

Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316
           +T +ILF+  GAF                                  P DL     +PE+
Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDNEKENSKALLEKIEPDDLVHFGLIPEL 295

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR  V   L  LN+ D   ILT+ ++ ++ QY++L   +G+ L F +D++  +A +A+ 
Sbjct: 296 IGRLHVITSLNELNEDDMVRILTEPKNAIVKQYQKLFAIDGVNLKFEDDALREIAKLALE 355

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L++++E ++ D+ F   + +   +VI  E VR
Sbjct: 356 RKT-----GARGLRSIIEEIMVDLMFELPEYKNYDIVITKEVVR 394


>gi|221310762|ref|ZP_03592609.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315087|ref|ZP_03596892.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320006|ref|ZP_03601300.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324288|ref|ZP_03605582.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767648|ref|NP_390700.2| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321312354|ref|YP_004204641.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           BSn5]
 gi|251757482|sp|P50866|CLPX_BACSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225185276|emb|CAB14782.2| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485237|dbj|BAI86312.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018628|gb|ADV93614.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           BSn5]
          Length = 420

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++  +A  
Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395


>gi|16332067|ref|NP_442795.1| ATP-dependent protease ATP-binding subunit ClpX [Synechocystis sp.
           PCC 6803]
 gi|6225172|sp|Q55510|CLPX_SYNY3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|1001376|dbj|BAA10866.1| ATP-dependent protease ATPase subunit [Synechocystis sp. PCC 6803]
          Length = 445

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 9/119 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60
           P  I   LD Y+IGQ +AK+ +++A+ N ++R  L        P D   EL   NILLVG
Sbjct: 83  PTAIKQYLDEYVIGQDEAKKVLSVAVYNHYKRLNLLERNQEIDPGDAV-ELQKSNILLVG 141

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 PTGSGKTLLAQTLAKILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311
           +T +ILFI  GAF                   RP +                        
Sbjct: 261 DTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAEPDDLVKFG 320

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     ILT   + ++ QY+ L+  + + LDF  D++ A+A
Sbjct: 321 LIPEFIGRIPVMACLNPLDEDALIAILTQPRNAIVKQYQTLLGMDHVELDFQPDAVRAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 TEAHRRKT-----GARALRGIVEELMLDVMY 406


>gi|308174520|ref|YP_003921225.1| protein unfolding ATPase [Bacillus amyloliquefaciens DSM 7]
 gi|307607384|emb|CBI43755.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus amyloliquefaciens DSM 7]
          Length = 417

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + LDF ++++  +A  
Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425
           A+   +     GAR L++++E ++ D+ F   + D  EK V     V D E  RL + D
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409


>gi|229543649|ref|ZP_04432709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           coagulans 36D1]
 gi|229328069|gb|EEN93744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           coagulans 36D1]
          Length = 422

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   L  Y+IGQ+ AK+++A+A+ N ++R    + + + EL   NI L+GPTG GKT
Sbjct: 64  PHEIREILAEYVIGQEQAKKSLAVAVYNHYKRINSNSKIDEVELAKSNICLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 65/240 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  HV  P DLL    
Sbjct: 236 DTTNILFICGGAFDGIDQIIKRRLGKKVIGFGTDLKNDELDEQSLLKHV-LPEDLLSFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     ILT+ ++ L+ QYK++++ + + L+F +D++  +A 
Sbjct: 295 IPEFIGRLPVIATLEQLDEEALIKILTEPKNALVKQYKKMLELDHVELEFEQDALKEIAK 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425
            A+   +     GAR L++++E ++ D+ F   S  D+++    K  V+D E+ RL + D
Sbjct: 355 KAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCIVTKESVLDKEFPRLVLKD 409


>gi|166154047|ref|YP_001654165.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           434/Bu]
 gi|166154922|ref|YP_001653177.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335248|ref|ZP_07223492.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis L2tet1]
 gi|238687397|sp|B0B8T1|CLPX_CHLT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687445|sp|B0BAG0|CLPX_CHLTB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|165930035|emb|CAP03518.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis 434/Bu]
 gi|165930910|emb|CAP06472.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 419

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R + L  D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238

Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312
            +NT++ILFI  GAF                  S   DL                     
Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLITFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++++ A+A
Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L  ++E +L D+ F
Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384


>gi|311695075|gb|ADP97948.1| ATP-dependent Clp protease ATP-binding subunit ClpX [marine
           bacterium HP15]
          Length = 427

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK  +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRNTLDEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKGDVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T ++LFI  GAF                     V+   D                    
Sbjct: 242 DTGNMLFICGGAFAGLDKVIRERTEKNSIGFSASVASQDDAKNTGDVIKDVETEDLVKYG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     ILT+ +++L  QY++L   EG+ LDF ED++ A+A
Sbjct: 302 LIPEFVGRLPVVATLNELDEEALVQILTEPKNSLTKQYQKLFDMEGVELDFREDALRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
             A+   +     GAR L+++ME  L D  +      + T VVID
Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVTKVVID 401


>gi|306829878|ref|ZP_07463065.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
 gi|304427889|gb|EFM30982.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
          Length = 410

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|291548892|emb|CBL25154.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus torques L2-14]
          Length = 489

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD YI+GQ+ AK+A+++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 137 APHKIKARLDEYIVGQEYAKKAISVAVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKT 196

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V      E  EQ  
Sbjct: 197 YLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQGI 250

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158
           I  +E  +D  + K  TS+ R+V  + ++ G
Sbjct: 251 IFIDE--IDK-IAKKKTSSQRDVSGESVQQG 278



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 249 GIIFIDEIDKIAKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 308

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
            +ILFI  GAF                                    V+    R   ++P
Sbjct: 309 KNILFICGGAFPDLEDIIKERLQKKTSMGFNAELKDTVEHDEELLSKVTIEDLRKFGMIP 368

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL + ++ ++ QY++L+  + + L+F + +++A+A+ A
Sbjct: 369 EFLGRLPIVFTLKGLDKEMLVKILKEPKNAILKQYQKLLALDEVKLEFDDSALEAIAEKA 428

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +       D GAR L+ ++E  + DI +
Sbjct: 429 ME-----KDTGARALRAIIEEFMLDIMY 451


>gi|290960372|ref|YP_003491554.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           scabiei 87.22]
 gi|260649898|emb|CBG73014.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           scabiei 87.22]
          Length = 428

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q   +          EL   NILL+GP
Sbjct: 64  PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 58/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                      P DL     
Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGM 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  ++++A+AD
Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +     ++   VVI A+ VR ++
Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408


>gi|306824842|ref|ZP_07458186.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433053|gb|EFM36025.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 410

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTADDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|293365855|ref|ZP_06612560.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315613540|ref|ZP_07888447.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331265985|ref|YP_004325615.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
 gi|291315679|gb|EFE56127.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315314231|gb|EFU62276.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326682657|emb|CBZ00274.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
          Length = 410

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|270292403|ref|ZP_06198614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
 gi|270278382|gb|EFA24228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
          Length = 410

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQSNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|269215645|ref|ZP_06159499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia
           exigua ATCC 700122]
 gi|269131132|gb|EEZ62207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia
           exigua ATCC 700122]
          Length = 452

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           PRE+   L ++++GQ  AKRA+++A+ N ++R  L  D+     EL   N+LL+GPTG G
Sbjct: 94  PRELYDLLSQHVVGQDAAKRALSVAVYNHYKRISLGQDVDADDVELAKSNVLLLGPTGSG 153

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 154 KTLLAQTLARALRVPFAIADATTLTEAGYVGEDVENILLKLITAA 198



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 103/225 (45%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  SV  + G          +
Sbjct: 208 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHL 267

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          V +                         P DL     
Sbjct: 268 DTTNILFILGGAFVGLADIIGQRVGKTGIGFTSDLPESKKHEEAELLAQVLPEDLNKFGM 327

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L + D   ILT+ ++ L+ QY  +   E   L FT D++ A+A 
Sbjct: 328 IPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQYARMFDFEDSKLTFTPDALRAIAH 387

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDA 416
            A   ++     GAR L+++ ERVL+DI F   + +  T V +DA
Sbjct: 388 EAKERST-----GARGLRSICERVLQDIMFDLPEHEGATAVTVDA 427


>gi|89098928|ref|ZP_01171808.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086332|gb|EAR65453.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
          Length = 376

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NI ++GPTG GKT
Sbjct: 19  PAEIRDILDEYVIGQEQAKKSLSVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 79  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 121



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 131 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 190

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 191 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSEQKQQELDQKELLSKVLPEDLLKFGLI 250

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     ILT  ++ L+ QY+++++ + + L+F E ++  +A  
Sbjct: 251 PEFIGRLPVIASLTQLDEEALIEILTKPKNALVKQYQKMLELDDVELEFEEGALHEIAKK 310

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 311 AIERKT-----GARGLRSIIEGIMLDVMF 334


>gi|326203840|ref|ZP_08193702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           papyrosolvens DSM 2782]
 gi|325985938|gb|EGD46772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           papyrosolvens DSM 2782]
          Length = 431

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y++GQ  AKR++++A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 64  PKEIKEILDQYVVGQDTAKRSLSVAVYNHYKRINSDVKTSDIELQKSNIVMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 FLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 166



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T +ILFI  GAF          + +                         P DLL    
Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESNKDKDVGQLLKDILPQDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+K+    ILT+ ++ L+ QY++L + + ++L+  +++++ +A+
Sbjct: 296 IPEFVGRLPIVVTLQSLDKNALVQILTEPKNALVKQYQKLFEMDDVLLEIQDEALELIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E  +  + +    +   +  +I  E +  H
Sbjct: 356 KAIERNT-----GARGLRAILEEAMMGVMYDIPSMTNVEKCIIGKEVIAEH 401


>gi|89897900|ref|YP_515010.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           felis Fe/C-56]
 gi|123735930|sp|Q256C3|CLPX_CHLFF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89331272|dbj|BAE80865.1| ATP-dependent Clp endopeptidase ATP-binding, ATP-binding subunit
           [Chlamydophila felis Fe/C-56]
          Length = 421

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R + L  +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDQYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG++ +            +Y 
Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLIAF 299

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + +I QY EL   E + L F ++++ A+
Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIIKQYIELFSEENVKLIFEKEALYAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386


>gi|227504042|ref|ZP_03934091.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199372|gb|EEI79420.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 431

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKNI 56
           P EI S LD+Y+IGQ  AKR +A+A+ N ++R ++              D   E+   NI
Sbjct: 68  PSEISSFLDKYVIGQDQAKRVLAVAVYNHYKRIKVEETAGLEGRRKKVEDENVEIAKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 LLLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 251 DTSNILFIVAGAFAGLDKVIAERVGKKGVGFGAKLETADEREKLDLFSEVRPEDLVKFGL 310

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   + +L++     +L + +++L+ QY+ L + +G  L F + ++ A+A+
Sbjct: 311 IPEFIGRLPIVATVDNLDRESLVKVLVEPKNSLVKQYQRLFEMDGAELVFEDGALGAIAE 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A+   +     GAR L+ +ME +L  I +   D ++ T V
Sbjct: 371 LALERKT-----GARGLRAIMEELLVPIMYELPDREDITAV 406


>gi|326800323|ref|YP_004318142.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
 gi|326551087|gb|ADZ79472.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
          Length = 414

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI S LD+Y+IGQ DAK+ +++A+ N ++R  Q++  D   E+   NI++VG TG 
Sbjct: 62  LKPAEIKSHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVEKD-EIEIEKSNIIMVGETGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 GKTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K  ++
Sbjct: 176 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAV 235

Query: 292 NTDHILFIASGAF-----------------------HVS----------RPADL-----L 313
           NT +ILFI  GAF                       H             P DL     +
Sbjct: 236 NTSNILFICGGAFDGIQKKIANRMRTQTVGYKMNSEHAEIDLNNLYKYITPQDLKAFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L++     ILT+ ++ L+ QYK+L   E I L F  +  + + D 
Sbjct: 296 PELIGRLPVITYLNPLDREALLNILTEPKNALVKQYKKLFDYEHIDLQFDTEVFEFIVDK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A         +GAR L+ + E ++ D  F
Sbjct: 356 ANEFK-----LGARGLRAICEAIMLDAMF 379


>gi|289705666|ref|ZP_06502051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
 gi|289557614|gb|EFD50920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
          Length = 432

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 15/118 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK--------- 54
           +P+EI   L+ ++IGQ+ AKR++A+A+ N ++R + P     DL D L  +         
Sbjct: 63  TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122

Query: 55  --NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             NIL+VGPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 180



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 190 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 249

Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314
           +T ++LFI +GAF                       H+          RP DLL     P
Sbjct: 250 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   ++ L       +LT+ ++ L+ QY+++   +G+ L+F +D++DA+   A
Sbjct: 310 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
               +     GAR L+++ME VL+ + F   S SD+   TVVI  E VR
Sbjct: 370 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGEAVR 411


>gi|313813440|gb|EFS51154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA1]
          Length = 429

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDE-----LMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q    +P   R E     L   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE ++ A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALGAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 10329]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 401


>gi|319425893|gb|ADV53967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens 200]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386


>gi|309811163|ref|ZP_07704959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
 gi|308434893|gb|EFP58729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
          Length = 413

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD--ELMPKNILLVGPTGV 64
           PREI   L  Y+IGQ  AKR++A+A+ N ++R Q    +  +D  E+   NILL+GPTG 
Sbjct: 64  PREIFDFLREYVIGQDAAKRSLAVAVYNHYKRVQAAEASGSKDPVEIAKSNILLIGPTGC 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +AR+   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 124 GKTYLAQTMARMLNVPFAIADATALTEAGYVGEDVENILLKLLQAS 169



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTAASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF----------------------HVS----------RPADLL-----P 314
           +T ++LFI  GAF                      H+           +P DL+     P
Sbjct: 239 DTTNVLFIVGGAFAGLEKIIEDRKGKKGLGFGSQLHLPAGGDASMTDVQPEDLMKFGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   ++ L++     ILT+ ++ L+ QYK + + +G+ L+FT D++DA+A+ A
Sbjct: 299 EFIGRLPVITTVEPLDREGMVSILTEPKNALVKQYKRMFEIDGVQLEFTPDALDAVAEQA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++  +     GAR L+ ++E VL  + F
Sbjct: 359 MSRGT-----GARGLRAILEEVLLPVMF 381


>gi|296331631|ref|ZP_06874100.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675410|ref|YP_003867082.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151226|gb|EFG92106.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413654|gb|ADM38773.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 420

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313
           +T +ILFI  GAF      + R                            P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGGDNKAADLEKEDLLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++  +A  
Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395


>gi|212716952|ref|ZP_03325080.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660237|gb|EEB20812.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM
           16992]
          Length = 447

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 65/233 (27%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278
           D++TV +  IQ  +        GI+++DE DKI AR SG    ++R    EGVQ+ LL +
Sbjct: 181 DVETVLQRLIQAADGDVARAQQGIIYIDEIDKI-ARKSGESTSITRDVSGEGVQQALLKI 239

Query: 279 VEGSSVSTKY-GS----------INTDHILFIASGAF----------------------H 305
           +EG+  S    GS          I+T  ILFI  GAF                      H
Sbjct: 240 LEGTVASVPVEGSRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 299

Query: 306 ----------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                         AD      LLPE  GR PV   L+ L + D   IL + E+ L+ QY
Sbjct: 300 EREVPKRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 359

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L   +G+ L FTED++  +A  ++   +     GAR L++++E+ LED  F
Sbjct: 360 QKLFAIDGVTLTFTEDAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 407



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 17/119 (14%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD-------------EL 51
           P +I + LD Y++GQ+ AKR +++A+ N ++R  +      +L D             ++
Sbjct: 75  PAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESTELSDRATRENDDPLAGVQV 134

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 135 AKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193


>gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
 gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116]
 gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 401


>gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
 gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNESKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 401


>gi|307244054|ref|ZP_07526173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492578|gb|EFM64612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus stomatis DSM 17678]
          Length = 421

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P+EI++ L+ Y+IGQ  AK+A+++A+ N ++R    +    D+  E+   NILL+GPTG 
Sbjct: 62  PKEIMAILNDYVIGQNKAKKALSVAVYNHYKRIYGDKIASEDI--EIQKSNILLLGPTGS 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  LV  A   + +++R
Sbjct: 120 GKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIVLKLVQAADFDIEKAQR 174



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 59/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 175 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPSGGRKHPHQEFLKV 234

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      V +                             P DLL    
Sbjct: 235 DTTNILFILGGAFDGIEKIVQKRGKDKVLGFGAKIESKTDMDIGKLYSQVIPDDLLKYGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT+ +++L+ QY +L + +   L+F  +++ A+A 
Sbjct: 295 IPEFVGRIPVLATLDLLDEESLVKILTEPKNSLVKQYTKLFEYDDTKLEFEPEALSAIAK 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413
            A++ N+     GAR L++++E  L +  +    L+  EK +V
Sbjct: 355 KAIDRNT-----GARGLRSIIEHSLMETMYEIPSLENVEKVLV 392


>gi|296127044|ref|YP_003634296.1| hypothetical protein Bmur_2020 [Brachyspira murdochii DSM 12563]
 gi|296018860|gb|ADG72097.1| Sigma 54 interacting domain protein [Brachyspira murdochii DSM
           12563]
          Length = 411

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64
             P++I S LD Y+IGQ  AK+ +++A+ N ++R  Q   D  D E+   N+LL+GPTG 
Sbjct: 64  LPPKQIKSLLDEYVIGQNYAKKVLSVAVYNHYKRITQSAEDKNDVEIEKSNVLLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 169



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 60/241 (24%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YGS---- 290
           I++ E  GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +   +G     
Sbjct: 173 IKLAEK-GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGGRKHP 231

Query: 291 ------INTDHILFIASGAF---------HVSRPA------------------------- 310
                 I+T +ILFI  GAF           S+                           
Sbjct: 232 HQDNLHIDTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMDNLNYDEIMKNISTE 291

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L + +   IL + ++ L  QY++L   + I L   ++
Sbjct: 292 DLVKYGLIPELIGRLPVIATLEELKEEELLQILKEPKNALTKQYQKLFSYDNIELKIDDE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRLHI 423
           ++  +    +  ++     GAR L+ + ERV+ D  +   D   ++K   +D EYV   +
Sbjct: 352 ALKVIVKKTMEEHT-----GARGLRALFERVMLDAMYDMPDDNKEKKVFELDKEYVESRL 406

Query: 424 G 424
           G
Sbjct: 407 G 407


>gi|194335899|ref|YP_002017693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693399|sp|B4SEI4|CLPX_PELPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194308376|gb|ACF43076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 438

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           SP+ I+  L +Y++GQ  AK+++A+A+ N ++R    +Q  AD    +   NILL+GPTG
Sbjct: 81  SPKAIMDSLGQYVVGQDAAKKSLAVAVYNHYKRIDSQEQQQADDEVVIEKSNILLIGPTG 140

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHAADFNLERTER 196



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 61/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 255 NINTKNILFICGGAFEGLDKLIAKRVSKSSMGFGAKVKTTQIGYDPEILKLVMQDDLHEY 314

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++   R IL + ++ +  QYK+L + +G+ L+FTE+++D +
Sbjct: 315 GLIPEFIGRLPVISTLEMLDEKALRNILVEPKNAITKQYKKLFEMDGVELEFTEEALDKV 374

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             +A+   +     GAR L++V+E V+ DI F    ++
Sbjct: 375 VKIAIERGT-----GARALRSVLENVMIDIMFEIPSMK 407


>gi|299140334|ref|ZP_07033497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX8]
 gi|298597668|gb|EFI53843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX8]
          Length = 428

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+     +  EL   NILLVGPTG GK
Sbjct: 69  PAEVKAFLDEYVIGQEITKKKLAVAVYNHYKRVQMNRTRGNDVELAKSNILLVGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 129 TLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENILLKLLQAA 172



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 66/219 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVASVPPQGGRKHPHQEFTIV 241

Query: 292 NTDHILFIASGAF-------------------------------------------HVSR 308
           +T +ILFI  GAF                                             + 
Sbjct: 242 DTTNILFICGGAFVGLEKVIGRRIGKKALGFKAISDPNAKEADVTPIRAQRDSELLRKAE 301

Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DLL     PE  GR PV   L  L+++    ILT   + ++ QY +L   EG+ + +T
Sbjct: 302 PQDLLKYGLIPEFVGRLPVLGILDELDEAALIEILTKPRNAILKQYAKLFDYEGVKVIWT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +D+  A+A  A+        +GAR L+ ++E ++ D+ +
Sbjct: 362 DDAARAIAREALTRK-----VGARGLRMILEELMLDLMY 395


>gi|78188166|ref|YP_378504.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           chlorochromatii CaD3]
 gi|78170365|gb|ABB27461.1| ClpX, ATPase regulatory subunit [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63
           SP+ IV  LD+Y++GQ+ AK+++A+A+ N ++R       A L + ++ K NILL+GPTG
Sbjct: 86  SPKAIVDVLDQYVVGQERAKKSLAVAVYNHYKRIESHNTSAALDEVVIEKSNILLLGPTG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +
Sbjct: 146 TGKTLLAQTLANLLDVPFSIVDATSLTEAGYVGDDVETILARLLHAS 192



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 202 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQGLLKILEGAVVGVPPKGGRKHPEQPLI 259

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           ++NT +ILFI  GAF          VS+ +                              
Sbjct: 260 NVNTKNILFICGGAFEGIDKIIARRVSKSSMGFGAKVKSSSMDYDPDILRQVMQDDLHEY 319

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ +  QYK+L   +G+ L+FT+++++ +
Sbjct: 320 GLIPEFIGRLPVISTLDMLDEKALHNILVEPKNAITKQYKKLFDMDGVELEFTDEALEKV 379

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++A    +     GAR L++V+E V+ DI +    ++E    ++ AE +
Sbjct: 380 VNIAKERGT-----GARALRSVLESVMIDIMYEIPSMKETHKCIVTAETI 424


>gi|15841981|ref|NP_337018.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551]
 gi|13882255|gb|AAK46832.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551]
 gi|323718963|gb|EGB28113.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551A]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLATMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|326382828|ref|ZP_08204518.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198418|gb|EGD55602.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 429

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 10/112 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------PADLRDELMPKNILL 58
           P EI   LD Y++GQ  AKR +A+A+ N ++R Q           P     EL   NIL+
Sbjct: 64  PAEIRDFLDNYVVGQDSAKRTLAVAVYNHYKRIQAGEKKAGDKRSPGAEPVELAKSNILM 123

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 245 DTTNVLFIVAGAFAGLEKVVDERIGKRGIGFGNDVPSKDKVDTTDHFAEVMPEDLIKFGL 304

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L   + + L+F++D+++A+AD
Sbjct: 305 IPEFIGRLPVVASVANLDKEALVSILSEPKNALVKQYVRLFDMDNVELEFSQDALEAVAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A++  +     GAR L+ +ME VL  + +      +   VV+  E VR
Sbjct: 365 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTGETVR 408


>gi|312863135|ref|ZP_07723373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
 gi|311100671|gb|EFQ58876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
          Length = 408

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 6/115 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64
           P+E++  L+ Y++GQ  AKRA+++A+ N ++R     + R+E    L   NIL++GPTG 
Sbjct: 63  PKELLDILNNYVVGQDRAKRALSVAVYNHYKRINF-TESREENDVDLQKSNILMIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 122 GKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  L+P
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +D+++A+A  A
Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVRQYQTLLSYDGVELEFDQDALEAIASKA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +   +     GAR L++++E V+ D+ F     ++ T V
Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390


>gi|284030230|ref|YP_003380161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
 gi|283809523|gb|ADB31362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
          Length = 431

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 10/112 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58
           PREI   L+ Y++GQ  AK+A+A+A+ N ++R           +   D   EL   NILL
Sbjct: 64  PREIYDFLNAYVVGQDVAKKALAVAVYNHYKRVRDGQGTSSAGRHAKDEAVELAKSNILL 123

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 IGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAF------------------HVSR---------------PADLL----- 313
           +T ++LFI  GAF                  + SR               P DLL     
Sbjct: 245 DTTNVLFIVGGAFAGLDHMVEQRVGKKTLGFNTSREPEKPKEVSGYSDVMPEDLLKFGLI 304

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   +  L++     IL++ ++ L+ QY+ L + + + L+F+ED+++A+AD 
Sbjct: 305 PEFIGRLPVITTVSPLDRDALIKILSEPKNALVKQYRRLFEIDNVELEFSEDAVEAIADQ 364

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+ L  T    GAR L+ +ME VL ++ +     ++   VV+  E V
Sbjct: 365 AL-LRGT----GARGLRAIMEEVLLNVMYEVPSREDVAKVVVTGEVV 406


>gi|225352781|ref|ZP_03743804.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156388|gb|EEG69957.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 447

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 17/119 (14%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD-------------EL 51
           P +I + LD Y++GQ+ AKR +++A+ N ++R  +     A LRD             ++
Sbjct: 75  PAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESAALRDRAAHASDDPLAGVQV 134

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 135 SKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278
           D++TV +  IQ  +        GIV++DE DKI AR SG    ++R    EGVQ+ LL +
Sbjct: 181 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 239

Query: 279 VEGSSVSTKY-GS----------INTDHILFIASGAF----------------------- 304
           +EG+  S    GS          I+T  ILFI  GAF                       
Sbjct: 240 LEGTVASVPVEGSRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 299

Query: 305 -H--------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            H            AD      LLPE  GR PV   L+ L + D   IL   E+ L+ QY
Sbjct: 300 DHEVPNRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVAPENALVKQY 359

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L   +G+ L FTE ++  +A  ++   +     GAR L++++E+ LED  F
Sbjct: 360 QKLFAIDGVTLTFTEGAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 407


>gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
 gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
          Length = 426

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNESKTVGELFTQVEPEDLVKY 300

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 401


>gi|255014830|ref|ZP_05286956.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp.
           2_1_7]
 gi|298375769|ref|ZP_06985725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_19]
 gi|298266806|gb|EFI08463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_19]
          Length = 410

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  ++
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313
           +T +ILF+  GAF                          V R        P DL     +
Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L  L++   R ILT+ ++++I QY +L   +GI L F E   + + D 
Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFDMDGIKLTFDEKVYEFIVDK 354

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E V+ D  +S    + K + +  EY +
Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P +I + LD+Y+IGQ DAKR +++++ N ++R  Q++ AD   E+   NI++VG TG GK
Sbjct: 63  PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174


>gi|225574480|ref|ZP_03783090.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038307|gb|EEG48553.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM
           10507]
          Length = 477

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 13/153 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  +  D  DE+     N+L++GPTG G
Sbjct: 123 APHKIKATLDDYVIGQEHAKKVISVAVYNHYKR--VATDTMDEIEIEKSNMLMIGPTGCG 180

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ
Sbjct: 181 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQ 234

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             I  +E  +D L  K  T N R+V  + ++ G
Sbjct: 235 GIIFIDE--IDKLAKKKNT-NQRDVSGESVQQG 264



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DK+  + + N   VS E VQ+ LL L+EGS V    G           ++NT
Sbjct: 235 GIIFIDEIDKLAKKKNTNQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNT 294

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 295 RNILFICGGAFPELENVIKERLNKQASMGFGADLKDKYDRDNKILEKVTVEDLRSFGMIP 354

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L +     IL + ++ ++ QY++L+  + + L+F + +++A+A  A
Sbjct: 355 EFIGRLPIIFTLSGLTQEMMVKILKEPKNAILKQYQKLLALDEVRLEFDDGALEAIAKKA 414

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +  ++     GAR L+ ++E  + DI +    D     V+I  EY+
Sbjct: 415 LEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGQVIITREYI 455


>gi|24373361|ref|NP_717404.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis
           MR-1]
 gi|46576583|sp|Q8EG18|CLPX_SHEON RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24347624|gb|AAN54848.1|AE015624_1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           oneidensis MR-1]
          Length = 426

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386


>gi|15674910|ref|NP_269084.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes M1 GAS]
 gi|19745953|ref|NP_607089.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS8232]
 gi|21910140|ref|NP_664408.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS315]
 gi|28896161|ref|NP_802511.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes SSI-1]
 gi|71903336|ref|YP_280139.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS6180]
 gi|71910504|ref|YP_282054.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS5005]
 gi|94990258|ref|YP_598358.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10270]
 gi|94994179|ref|YP_602277.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10750]
 gi|306827518|ref|ZP_07460801.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|54036858|sp|P63794|CLPX_STRP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54036859|sp|P63795|CLPX_STRP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040896|sp|P63793|CLPX_STRP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123640038|sp|Q48U22|CLPX_STRPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215212|sp|Q1JHC2|CLPX_STRPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215213|sp|Q1J741|CLPX_STRPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13622051|gb|AAK33805.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes M1 GAS]
 gi|19748112|gb|AAL97588.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS8232]
 gi|21904333|gb|AAM79211.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS315]
 gi|28811411|dbj|BAC64344.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes SSI-1]
 gi|71802431|gb|AAX71784.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS6180]
 gi|71853286|gb|AAZ51309.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94543766|gb|ABF33814.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10270]
 gi|94547687|gb|ABF37733.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10750]
 gi|304430316|gb|EFM33342.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 409

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L F +++++A+A+ A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|88855130|ref|ZP_01129795.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
 gi|88815658|gb|EAR25515.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
          Length = 425

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PREI + L+ Y+IGQ+ AKRA+++A+ N ++R +    +          E+   NILL+G
Sbjct: 66  PREIYAFLEEYVIGQEAAKRALSVAVYNHYKRVRARNTITSADAVIDDVEIAKSNILLIG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 185 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314
           +T ++LFI +GAF      +S                            P DL     +P
Sbjct: 245 DTTNVLFIVAGAFAGLEEIISNRAGKKGIGFGAPLHSKGDDVNLFGEVLPEDLHKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     ILT  ++ L+ QY+ + + +G+ L+F  D+++++AD+A
Sbjct: 305 EFIGRLPVVTTVTQLDQVALMDILTTPKNALVRQYQRMFEIDGVELEFERDALESIADLA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           V L  T    GAR L+ ++E VL  I F
Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMF 387


>gi|50083773|ref|YP_045283.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           ADP1]
 gi|61211483|sp|Q6FEP7|CLPX_ACIAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49529749|emb|CAG67461.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ADP1]
          Length = 436

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63
           P EI + LD+Y+IGQ  AK+ +++A+ N ++R +       +    E+   NILL+GPTG
Sbjct: 63  PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKAGQSGHVSKHEVEIAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 238

Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312
           +T +ILFI  GAF                     V +               P DL    
Sbjct: 239 DTSNILFICGGAFAGLEKIVQQRHEKGGIGFNAEVKKKDETKKLAELFRQVEPTDLVKFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L+++    ILT+ ++ L  QY+ L + E + L F E ++ A+A
Sbjct: 299 LIPEFIGRLPVIATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVFEESALRAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             A+  N+     GAR L+++ME VL +  +     ++  TVV++   +R
Sbjct: 359 KKALERNT-----GARGLRSIMENVLLETMYDLPSRKDIGTVVVNEAVIR 403


>gi|258652075|ref|YP_003201231.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nakamurella
           multipartita DSM 44233]
 gi|258555300|gb|ACV78242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nakamurella
           multipartita DSM 44233]
          Length = 422

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P  I   LD+Y+IGQ  AK+A+++A+ N ++R Q   D   E   L   NIL++GPTG G
Sbjct: 64  PTAIREYLDQYVIGQDTAKKALSVAVYNHYKRIQAGPDRGPEPVELAKSNILMLGPTGCG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 60/237 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI +GAF          V R                         P DL+    
Sbjct: 238 DTTNVLFIVAGAFAGLEKIVGERVGRRGLGFGAEVRSKFDIDGSDVFSDVMPEDLIKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     ILT+    L  QY+ L + +G+ L+F  D+++A+AD
Sbjct: 298 IPEFIGRLPVVASVTNLDKESLVKILTEPRDALSKQYQRLFEMDGVALEFEPDALEAIAD 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428
            A+ L  T    GAR L+ +ME VL    +      + + VV+ AE VR ++  +P+
Sbjct: 358 EAI-LRGT----GARGLRAIMEEVLLPAMYEVPGRDDVERVVVSAETVRSNV--YPT 407


>gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
 gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
          Length = 443

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 63/104 (60%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ++AK+ +++A+ N ++R         +L   NIL++GPTG GK
Sbjct: 75  LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 135 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAA 178



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 187 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 246

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           I+T +ILFI  GAF                                      P DL    
Sbjct: 247 IDTTNILFICGGAFDGLEKIVENRLGAGSIGFEVEIADRQNSDIDEMLAQVMPEDLTKFG 306

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV V LKSLN+     IL+  ++ ++ QY+ L   +G+ L+FT+D++ ++A
Sbjct: 307 LIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +AV   +     GAR L+ +ME V+ DI +
Sbjct: 367 HMAVERKT-----GARGLRAIMESVMMDIMY 392


>gi|119963777|ref|YP_948114.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
 gi|119950636|gb|ABM09547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
          Length = 450

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56
           PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q     +             E+   NI
Sbjct: 85  PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKAGSLGEGSHHEDVEIAKSNI 144

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 145 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 198



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 62/229 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 208 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 267

Query: 292 NTDHILFIASGAFH------VSR--------------------------PADLL-----P 314
           +T ++LFI +GAF        SR                          P DLL     P
Sbjct: 268 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGAPLNEARDNVDTYGEVMPEDLLKFGLIP 327

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   + SL++     IL+  ++ L+ QY+++ + +G+ L F +D++DA+AD A
Sbjct: 328 EFIGRLPVITTVSSLDRPALIQILSTPKNALVKQYQKMFQLDGVELQFDDDALDAIADQA 387

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419
           +   +     GAR L+ +ME VL  + F   DL  +    TVVI A+ V
Sbjct: 388 LERGT-----GARGLRAIMEDVLLPVMF---DLPSRDDIATVVITADVV 428


>gi|317026128|ref|XP_001389032.2| ATP-dependent Clp protease [Aspergillus niger CBS 513.88]
          Length = 666

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 190/483 (39%), Gaps = 102/483 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRN--------------------RWRRQQ----- 42
           +PR +   LD++++GQ  AK+ +++A+ N                    +W R++     
Sbjct: 136 TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 195

Query: 43  ---------------------LPADLRD--------ELMPKNILLVGPTGVGKTAISRRL 73
                                LP   +         +L   NILL+GP+GVGKT +++ L
Sbjct: 196 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 255

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+ 
Sbjct: 256 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAA 315

Query: 129 NAE-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                     E +  AL+ K     T +V  K+ R         +   ++     S F+ 
Sbjct: 316 KVSHGKDVSGEGVQQALL-KLIEGTTVQVQAKQERSAPRVGNSPNTFPSNNPLGNSPFNP 374

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI--- 238
            GG    +    E+++      R   I       +  L +      + MD + R SI   
Sbjct: 375 NGG---NMPQKGEVYNV-----RTDNILFIFSGAFVGLHK------VIMDRISRGSIGFG 420

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           Q V    +      D     +    I  G   E + +  LP     + +T   S +++  
Sbjct: 421 QPVRGSALTNNRSRDHTPGNNEPIPILPGSEEEALYKKHLPFF---TSATSPNSPDSEPT 477

Query: 297 LFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            F    A  +  P DL     +PE+ GR PV   L +L       ILT+  ++L+ QY  
Sbjct: 478 YF---NALDLLNPTDLQNYGFIPELVGRVPVTAALSTLTTPLLVRILTEPRNSLLAQYTT 534

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L    GI + FT  ++  +A  A  + +     GAR L+T +E +L D  F       K 
Sbjct: 535 LFSLSGIEIRFTTPALHKIAANAFTMGT-----GARALRTELETILSDAMFETPGSSVKF 589

Query: 412 VVI 414
           V++
Sbjct: 590 VLV 592


>gi|163841991|ref|YP_001626396.1| ATP-dependent protease ATP-binding subunit ClpX [Renibacterium
           salmoninarum ATCC 33209]
 gi|189044144|sp|A9WUW1|CLPX_RENSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|162955467|gb|ABY24982.1| ATP-dependent endopeptidase clp ATP-binding subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 427

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 10/112 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-------ELMPKNILL 58
           P+EI + L  Y+IGQ+ AKR++++A+ N ++R Q  +    L D       E+   NILL
Sbjct: 64  PKEIFNFLQEYVIGQEPAKRSLSVAVYNHYKRIQAGSKGSALADGNHHDDVEIAKSNILL 123

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 IGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244

Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314
           +T ++LFI +GAF                                    P DLL     P
Sbjct: 245 DTTNVLFIVAGAFAGLEEIIGARAGKKGIGFGAPLGALSGDELGYGDVMPEDLLKFGLIP 304

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L++     IL++ ++ LI QY+++   +G+ L F +D+++A+AD A
Sbjct: 305 EFIGRLPVITTVSHLDRPALMQILSEPKNALIKQYQKMFHLDGVDLVFEDDALEAIADQA 364

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +   +     GAR L+ +ME VL  + F     ++  + V+ AE VR
Sbjct: 365 LERGT-----GARGLRAIMEEVLLPVMFELPSREDIASAVVTAEVVR 406


>gi|126700923|ref|YP_001089820.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile 630]
 gi|254976903|ref|ZP_05273375.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-66c26]
 gi|255094289|ref|ZP_05323767.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CIP 107932]
 gi|255102471|ref|ZP_05331448.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-63q42]
 gi|255308376|ref|ZP_05352547.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile ATCC 43255]
 gi|255316043|ref|ZP_05357626.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-76w55]
 gi|255518700|ref|ZP_05386376.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-97b34]
 gi|255651822|ref|ZP_05398724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-37x79]
 gi|255657262|ref|ZP_05402671.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-23m63]
 gi|260684848|ref|YP_003216133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CD196]
 gi|260688506|ref|YP_003219640.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile R20291]
 gi|296451897|ref|ZP_06893614.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296879708|ref|ZP_06903683.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
 gi|306521609|ref|ZP_07407956.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-32g58]
 gi|123066426|sp|Q180E8|CLPX_CLOD6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115252360|emb|CAJ70201.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           difficile]
 gi|260211011|emb|CBA66322.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile CD196]
 gi|260214523|emb|CBE07037.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile R20291]
 gi|296259279|gb|EFH06157.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296429297|gb|EFH15169.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
          Length = 416

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66
           P+E++  L+ Y+IGQ+ AK+A+++A+ N ++R     +  +D E+   NILL+GPTG GK
Sbjct: 63  PKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKKSSSKDIEIQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKI 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T ++LFI  GAF                                      P DLL    
Sbjct: 236 DTTNVLFILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELDLGKLYEKVLPEDLLKYGI 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L++     IL + ++ L+ QYK+L++ + + L+F E ++ A+A 
Sbjct: 296 IPEFIGRIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L++++E V+ +  F
Sbjct: 356 KAIERNT-----GARGLRSIVESVMMETMF 380


>gi|257869243|ref|ZP_05648896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           gallinarum EG2]
 gi|257803407|gb|EEV32229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           gallinarum EG2]
          Length = 417

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+E++  L+ Y+IGQ  AK+ +A+A+ N ++R  +     D EL   NI L+GPTG GKT
Sbjct: 67  PQELLHILNDYVIGQDRAKKTLAVAVYNHYKRVNVEPTAEDVELQKSNICLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 169



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 58/240 (24%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289
           +++M E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 172 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 230

Query: 290 ------SINTDHILFIASGAF---------------------------------HVSRPA 310
                  I+T +ILFI  GAF                                 H+  P 
Sbjct: 231 PHQEMIQIDTTNILFIVGGAFDGIDTIVKNRMGEKTIGFGTNNKRFSEDESIMQHII-PE 289

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DLL     PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+F   
Sbjct: 290 DLLKFGLIPEFIGRLPVMAALDKLTTDDLVRILTEPKNALVKQYQKLLALDDTELEFEPA 349

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++ A+AD A+  N+     GAR L++++E ++ D+ F+    +    VI  E     IG+
Sbjct: 350 ALRAIADKAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIEKVIITEDAAKEIGE 404


>gi|191638334|ref|YP_001987500.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           casei BL23]
 gi|227535178|ref|ZP_03965227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631581|ref|ZP_04674612.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301066387|ref|YP_003788410.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           casei str. Zhang]
 gi|190712636|emb|CAQ66642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei BL23]
 gi|227187223|gb|EEI67290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239526046|gb|EEQ65047.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300438794|gb|ADK18560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei str. Zhang]
 gi|327382362|gb|AEA53838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei LC2W]
 gi|327385562|gb|AEA57036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei BD-II]
          Length = 416

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI+  L+ Y+IGQ  AK+A+++A+ N ++R  Q+    +D  EL   NI L+GPTG G
Sbjct: 64  PVEIMKTLNEYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 168



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 178 GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAF----HVSR-----------------------------PADLL----- 313
           +T +ILFI  GAF    ++ +                             P DL+     
Sbjct: 238 DTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTDSNEQVDPDKSLMQQIIPEDLMQFGII 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ LN+ D   ILT+ ++ L+ QY++L+  +   L+FT +++ A+A  
Sbjct: 298 PEFIGRIPILAALEKLNEDDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQ 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+     V D GAR L+++ME +++D  F
Sbjct: 358 AI-----VRDTGARGLRSIMEAIMQDTMF 381


>gi|254495063|ref|ZP_05107987.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
 gi|85819413|gb|EAQ40570.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
          Length = 412

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P +I   LD+YIIGQ + KRA+A+A+ N ++R     +  D  E+   NI+LVG TG GK
Sbjct: 63  PLQIKEFLDQYIIGQDETKRAMAVAVYNHYKRLLQDKNTEDDVEIEKSNIVLVGETGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ +A++   PF  V+ T  T+ GYVG +VE I+  L+ VA   V ++ R
Sbjct: 123 TLVAKTIAKMLNVPFSIVDATVLTQAGYVGEDVESILSRLLQVADYDVEKAER 175



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 56/232 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K+  +
Sbjct: 176 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGSVVNVAPKGGRKHPEQKFIEV 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           NT  ILFIA GAF      +S+                            P DL     +
Sbjct: 236 NTKDILFIAGGAFSGIDKIISKRLNRQAVGFGASLEEDKLDEDNLLQYITPLDLKSFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  ++  L+    R ILT+ ++++I QY +L   + +     E++++ + + 
Sbjct: 296 PEIIGRLPVLSYMNPLDAKTLRAILTEPKNSIIKQYAKLFVMDDVNFTIDEEALNYIVEK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           AV        +GAR L+++ E +  D  F     +EK   +  +Y    + +
Sbjct: 356 AVEYK-----LGARGLRSLCEAIFTDAMFDLPSSEEKEFNVTKDYAEAKLSN 402


>gi|154174197|ref|YP_001407541.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           curvus 525.92]
 gi|112803786|gb|EAU01130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           curvus 525.92]
          Length = 411

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           N +P+++ S LD Y+IGQ  AK+  ++ + N ++R    ++++D  E+   NILLVGPTG
Sbjct: 60  NLTPKQLKSVLDSYVIGQDRAKKVFSVGVYNHYKRIFKQSNIKDDTEISKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 120 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 55/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 176 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 235

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILF+  GAF                                 +  P DL     +P
Sbjct: 236 DTTNILFVCGGAFDGLVDIIERRVGKNILGFNQEKRGKAEREDLLSLLEPDDLVHFGLIP 295

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + + D   ILT+ ++ ++ QY++L   +G  L F +D++  +A +A
Sbjct: 296 ELIGRLHVVATLNEITQEDMVKILTEPKNAILKQYQKLFAIDGATLKFDDDALKEVAALA 355

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +   +     GAR L+++ME ++ DI +   +L++  VVI  E V+
Sbjct: 356 IERKT-----GARGLRSIMEEIMTDIMYDLPELKDYEVVISKEVVK 396


>gi|332073906|gb|EGI84384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41301]
          Length = 410

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 414

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R      LR+        EL   NILL+
Sbjct: 55  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 108

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+
Sbjct: 109 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 156



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 169 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 228

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 229 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 288

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+
Sbjct: 289 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 348

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 349 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 389


>gi|262198159|ref|YP_003269368.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
 gi|262081506|gb|ACY17475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
          Length = 422

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGVG 65
           P+ I   LD Y+IGQ+ AK+ +A+A+ N ++R    A   +   EL   NILL+GPTG G
Sbjct: 67  PQHIKKILDEYVIGQERAKKILAVAVHNHYKRIDHKAGDDEEEVELQKSNILLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A + +  ++R
Sbjct: 127 KTLLAQTLARILNVPFAIADATNLTEAGYVGEDVENIIVSLLQNADHDIERAQR 180



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 181 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIIEGTLAAVPPKGGRKHPQQEFLQV 240

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                     +P DLL    
Sbjct: 241 DTSNILFICGGAFTGLEEIIENRIGQRMIGFGATMKPKKALDRWELIKEVQPEDLLKYGM 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L++     ILT  ++ LI QY++L + +G+ L FT  ++  +A 
Sbjct: 301 IPEFVGRLPMIAPLHELSEDALVQILTQPKNALIKQYQKLFEMDGVKLKFTHGALYKIAS 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           +A    S     GAR L+ ++E  L DI + + S      V+I+ + V  H
Sbjct: 361 LAQAQKS-----GARGLRAILESALLDIMYDTPSQHNISEVIINEDVVEKH 406


>gi|15834703|ref|NP_296462.1| ATP-dependent protease ATP-binding subunit [Chlamydia muridarum
           Nigg]
 gi|270284869|ref|ZP_06194263.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum Nigg]
 gi|270288896|ref|ZP_06195198.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum Weiss]
 gi|301336248|ref|ZP_07224450.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum MopnTet14]
 gi|13878445|sp|Q9PLM1|CLPX_CHLMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7190113|gb|AAF38960.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Chlamydia muridarum Nigg]
          Length = 419

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y++GQ+ AK+ +++A+ N ++R + L  D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVVGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 60/211 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238

Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312
            +NT++ILFI  GAF                  S   DL                     
Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTDRDRLLAKVETEDLIAFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL   E + L F ++++ A+A
Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFAEENVKLIFEKEALYAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L  ++E +L D+ F
Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384


>gi|307127779|ref|YP_003879810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
 gi|306484841|gb|ADM91710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
          Length = 410

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|322377849|ref|ZP_08052338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
 gi|321281272|gb|EFX58283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
          Length = 410

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERTER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|262340994|ref|YP_003283849.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272331|gb|ACY40239.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 401

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 54/213 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+FLDE DKI  +++   I   VS EGVQ+ LL ++EGS ++            K   I
Sbjct: 178 GIIFLDEIDKISRKNNNPSITRDVSGEGVQQALLKILEGSVINVPPQGGRKHPDQKMIPI 237

Query: 292 NTDHILFIASGAF----------------------HVSRPAD--------------LLPE 315
           NT++ILFIA G F                       V +  +              L+PE
Sbjct: 238 NTENILFIAGGTFDGIEKIVSDRIEKIPIGFLTQERVKKNNNYLKNIISTDLKNFGLIPE 297

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           + GRFPV  +L  LNK+  + IL + ++ LI QY++L   + I ++ T+ ++D +AD   
Sbjct: 298 LIGRFPVITYLHPLNKNMLKRILLEPKNALIKQYQKLFNMDNISMNITDKALDVIADKTF 357

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
                VG +GAR L+T  E++  D  +     Q
Sbjct: 358 ----QVG-LGARGLRTFCEKIFLDYMYDIEKTQ 385



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 8/107 (7%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTGVGKTA 68
           S LD++++ Q +AK+ +++A+ N ++R     + ++E     +   NILL+G TG GKT 
Sbjct: 67  SFLDKHVVEQNEAKKILSVAVYNHYKRILHSKNQKNENEDVEIEKSNILLIGNTGTGKTL 126

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL---VDVAIN 112
           ++R +++L   PF   + T  TE GYVG +VE I+  L   VD  IN
Sbjct: 127 LARSISKLLKVPFAIADATTLTEAGYVGEDVESILTKLLQSVDYDIN 173


>gi|289168392|ref|YP_003446661.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
 gi|288907959|emb|CBJ22799.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
          Length = 410

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|182684524|ref|YP_001836271.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221232330|ref|YP_002511483.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
 gi|238691178|sp|B2IR87|CLPX_STRPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763866|sp|B8ZLT1|CLPX_STRPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182629858|gb|ACB90806.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|220674791|emb|CAR69364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
          Length = 410

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 64  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381


>gi|113970829|ref|YP_734622.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|114048054|ref|YP_738604.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
 gi|123131263|sp|Q0HTK8|CLPX_SHESR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123324884|sp|Q0HHA2|CLPX_SHESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113885513|gb|ABI39565.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|113889496|gb|ABI43547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
          Length = 426

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386


>gi|157826114|ref|YP_001493834.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia akari
           str. Hartford]
 gi|166215196|sp|A8GPK1|CLPX_RICAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157800072|gb|ABV75326.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str.
           Hartford]
          Length = 425

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I + L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGVDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QYK+  + +   L     +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYKKQFELDDTELVIENSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|260590037|ref|ZP_05855950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|331084353|ref|ZP_08333457.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539549|gb|EEX20118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|330401617|gb|EGG81198.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 475

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  + AD+ D  E+   N+L++GPTG G
Sbjct: 122 APHKIKASLDEYVIGQEKAKKVMSVAVYNHYKR--VFADMNDDIEIEKSNMLMIGPTGSG 179

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 180 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 233



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 57/232 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS +    G           ++N
Sbjct: 233 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEIEVPVGANSKNAMVPLTTVN 292

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 293 TKNILFICGGAFPDLEEIIKERLNKTASIGFQADLKDKYDHDNTLLEKVTVDDIKKFGMI 352

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  LN+     IL + ++ ++ QY++L+  + + L+F + +++A+AD+
Sbjct: 353 PEFLGRLPIIFTLTGLNRDMLVEILKEPKNAILKQYQKLLALDEVKLEFEDGALEAIADM 412

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           A+  ++     GAR L+ ++E  + DI +    D     V+I  EY+  H G
Sbjct: 413 ALEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGEVIITKEYIE-HTG 458


>gi|206900318|ref|YP_002250811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           thermophilum H-6-12]
 gi|226706584|sp|B5YE53|CLPX_DICT6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206739421|gb|ACI18479.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           thermophilum H-6-12]
          Length = 411

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + + + +  E+   NILL+GPTGVGK
Sbjct: 61  PHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMKSKITEDVEIQKSNILLIGPTGVGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNA 164



 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++  I
Sbjct: 174 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLRIVEGTIANVPPQGGRKHPYQEFIQI 233

Query: 292 NTDHILFIASGAFH-----------VSR-----------------------PADLL---- 313
           NT  ILFIA G+F            VS                        P DL+    
Sbjct: 234 NTKDILFIAGGSFEGIEKIVEKRLDVSSIGFGAQIEPKNRKSLTQILNHIIPEDLIKFGM 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GRFPV   L+ L++     ILT+ ++ L+ QYK L+  EG+ +DFT++++ ++  
Sbjct: 294 IPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSIEGVEIDFTDEALRSIVK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L+ VME ++ D+ +   +L  K   I  E V
Sbjct: 354 EALEKAT-----GARGLRAVMEELMLDLMYELPNLGIKRFTITPELV 395


>gi|237752785|ref|ZP_04583265.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376274|gb|EEO26365.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 416

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           SP+E+ + LD Y+IGQ+ AK+  ++A+ N ++R    A + D   E+   NILL+GPTG 
Sbjct: 63  SPKELKAVLDEYVIGQEKAKKVFSVAVYNHYKRVLQGAAIDDDDTEITKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   ++++++
Sbjct: 123 GKTLMAQTLAKFLNIPIAICDATSLTEAGYVGEDVENILTRLLQEAGGDIQKAQK 177



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 178 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQEFIQI 237

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314
           +T  ILFI  GAF                  H  +              P DL     +P
Sbjct: 238 DTKDILFICGGAFDGLKDIIERRLGGNTLGFHNKKGKKKELEYVLEFVEPDDLVSYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L+ + K     IL   ++ L  QYK+L   +G  L F ++++  +A +A
Sbjct: 298 ELIGRLHMFATLEEITKEAMIEILQKPKNALTKQYKKLFSLDGAQLTFKDEALQEIAGLA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +     GAR L+ +ME ++ D+ +   +L    VVI  E V
Sbjct: 358 ISRKT-----GARGLRAIMEEIMLDVMYELPELSGYEVVITKEAV 397


>gi|218440072|ref|YP_002378401.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           7424]
 gi|226706581|sp|B7KBH7|CLPX_CYAP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218172800|gb|ACK71533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7424]
          Length = 447

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 15/123 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56
           PREI   LD Y+IGQ +AK+ +++A+ N ++R    +D++             EL   NI
Sbjct: 83  PREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRL---SDIQAKRTGTGATDDPVELQKSNI 139

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E
Sbjct: 140 LLMGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEE 199

Query: 117 SRR 119
           ++R
Sbjct: 200 AQR 202



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311
           +T +ILFI  GAF                   RPA+                        
Sbjct: 263 DTSNILFICGGAFVGLDKIVEQRLGKKSMGFIRPAEGTSKEKWSADLLKQLEPDDLVKFG 322

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV   L  L++     ILT   + L+ QY++L+K + + L+F  +++ A+A
Sbjct: 323 MIPEFVGRIPVMASLDPLDEDALIAILTQPRNALVKQYQKLLKMDNVQLEFKSEAVRAIA 382

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ ++ +
Sbjct: 383 QEAYRRKT-----GARALRGIVEELMLEVMY 408


>gi|94988378|ref|YP_596479.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS9429]
 gi|94992260|ref|YP_600359.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS2096]
 gi|166215210|sp|Q1JC93|CLPX_STRPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215211|sp|Q1JM77|CLPX_STRPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94541886|gb|ABF31935.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94545768|gb|ABF35815.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS2096]
          Length = 409

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L  SD   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|251772220|gb|EES52790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Leptospirillum ferrodiazotrophum]
          Length = 434

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD+YIIGQ+ AK+ +++A+ N ++R +      D EL   NI+++GPTG G
Sbjct: 68  MKPSEIKRALDQYIIGQERAKKILSVAVYNHYKRARANKISEDVELQKGNIIMLGPTGTG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 128 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENIILKLLQAA 172



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 61/222 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL LVEG+  +            ++  
Sbjct: 181 WGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQ 240

Query: 291 INTDHILFIASGAF-----------------------------------HVSRPADLL-- 313
           ++T +ILFI  GAF                                     +RP DLL  
Sbjct: 241 VDTTNILFICGGAFVGLDSIISQRLARKTMGFGAESKPAQDRILSGKLFMEARPDDLLKY 300

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFPV   L+ L++  F  ILT  ++ L+ Q+++L   E + L FTED++ A+
Sbjct: 301 GIIPEFIGRFPVMAILEDLDEEAFLQILTQPKNALVKQFEKLFAIEKVKLRFTEDALRAV 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
           A  A    +     GAR L+ ++E V+ D+ +   S S+L E
Sbjct: 361 AHKAYTQKT-----GARGLRAILEEVMLDLMYDIPSLSNLSE 397


>gi|319440921|ref|ZP_07990077.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           variabile DSM 44702]
          Length = 424

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLVG 60
           P  I   LD Y+IGQ DAKR +A+A+ N ++R +  +        D   EL   NIL++G
Sbjct: 62  PAAITRFLDEYVIGQDDAKRTLAVAVYNHYKRTRAESSDATARRSDDEVELSKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 171



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G           
Sbjct: 181 GIIYVDELDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T ++LFI SGAF                                     P DL     +
Sbjct: 241 DTKNVLFIVSGAFAGLEKVISDRRGKKGVGFGAEIRGKADEEKDPFRYVEPEDLVKFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  H+  L+      ILT+ +++L+ QY+ L + +G+ L F ED++ A+A+ 
Sbjct: 301 PELIGRLPVITHVGHLDSDALVKILTEPKNSLVRQYQRLFEMDGVRLSFEEDALRAIAEK 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A++  +     GAR L++++E +L  + FS   D     V+I  + VR
Sbjct: 361 ALDRGT-----GARGLRSIVESILLPVMFSIPDDTGTGEVIITGDSVR 403


>gi|225861402|ref|YP_002742911.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|225727587|gb|ACO23438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 402

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 56  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373


>gi|326501208|dbj|BAJ98835.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP-------------ADLRD-- 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R   Q L              AD  D  
Sbjct: 223 TPKEISKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGCSDGEADGEDNV 282

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 283 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLSV 342

Query: 110 A 110
           A
Sbjct: 343 A 343



 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291
           G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+                I
Sbjct: 353 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 412

Query: 292 NTDHILFIASG----------------AFHVSRPA------------------------- 310
           +T  ILFI  G                +     P                          
Sbjct: 413 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRASMRTSGISSAQVTSSLLESVESG 472

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +LT+ ++ L  Q+K+L     + L FT+ 
Sbjct: 473 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQFKKLFSMNNVKLHFTDA 532

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A+  N+     GAR L+T++E +L D  +   D +     IDA
Sbjct: 533 ALRIIAQKAMCKNT-----GARGLRTILENILMDSMYEIPDTKSGEKRIDA 578


>gi|317124507|ref|YP_004098619.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Intrasporangium calvum DSM 43043]
 gi|315588595|gb|ADU47892.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Intrasporangium calvum DSM 43043]
          Length = 425

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           PREI   L+ Y++GQ  AK+++A+A+ N ++R Q     + E     +   NILL+GPTG
Sbjct: 64  PREIFEFLEHYVVGQDAAKKSLAVAVYNHYKRIQAGEGPKREDDHVDIAKSNILLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 SGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAF----------------------HVSR----------PADLL-----P 314
           +T ++LFI  GAF                      H ++          P DLL     P
Sbjct: 240 DTTNVLFIVGGAFSGLEKIIESRSGRKGLGFGQPLHTAKDLGDSFADVMPEDLLKFGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L++     ILT   + L+ QY+++   +G+ L+FT+D+++A+AD A
Sbjct: 300 EFIGRLPVLTTLGPLDQHALVNILTAPRNALVKQYQKMFAIDGVELEFTDDALEAVADQA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  T    GAR L+ +ME VL  + F
Sbjct: 360 L-LRGT----GARGLRAIMEEVLLPVMF 382


>gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 412

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
            +P+EI  +LD Y+IGQ + K+ +A+A+ N ++R    A+  DE    L   N+LL+GPT
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILAVAVYNHYKRILDNAERTDENAVELQKSNVLLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 122 GSGKTLLAQTLARSLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 169



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPQGGRKHPNQELIEI 238

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADL----- 312
           +T +ILFI  GAF                     +S+              P DL     
Sbjct: 239 DTSNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEISKEKEERVGEVFAKVLPEDLVRQGI 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+   L+ L++     ILT+ ++ ++ QYK+L   EG+ L+FT +++  +A 
Sbjct: 299 IPELVGRLPIITTLQDLDEEALIKILTEPKNAIVKQYKKLFDIEGVELEFTPEALKKIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
           +A+        IGAR L+ ++E+ + ++ +   SD     VVI  E V
Sbjct: 359 LALERR-----IGARGLRAIIEQTMLELMYEVPSDESIHKVVIGEEAV 401


>gi|332200133|gb|EGJ14206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47368]
          Length = 401

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|307704381|ref|ZP_07641296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
 gi|307708344|ref|ZP_07644811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307615790|gb|EFN94996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307622066|gb|EFO01088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
          Length = 401

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|169834164|ref|YP_001694974.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996666|gb|ACA37278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 402

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 56  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373


>gi|332978058|gb|EGK14796.1| ATP-dependent Clp protease ATP-binding subunit [Desmospora sp.
           8437]
          Length = 423

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ+ AK+++++A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 67  PQEINAILDEYVIGQEQAKKSLSVAVYNHYKRINSSHKSDDVELQKSNIIMIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 127 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 178



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILF+  GAF                                  +  P DLL     
Sbjct: 239 DTGNILFVCGGAFDGLEPIIKRRIGKKVIGFGADSNTDDLKQGEYLKMVLPEDLLRFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT+ ++ L+ QY++L++ + + L F ED++ A+AD 
Sbjct: 299 PEFVGRLPVISTLEPLDQDALVRILTEPKNALVKQYQKLLEMDDVKLTFEEDALKAIADE 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  N+     GAR L+ ++E ++ D+ F
Sbjct: 359 AIRRNT-----GARGLRAIIESIMLDVMF 382


>gi|220928260|ref|YP_002505169.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           cellulolyticum H10]
 gi|254763841|sp|B8I8F6|CLPX_CLOCE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219998588|gb|ACL75189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulolyticum H10]
          Length = 431

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+EI   LD+Y++GQ  AKR++++A+ N ++R  + +D++    EL   NI+++GPTG G
Sbjct: 64  PKEIKEILDQYVVGQDAAKRSLSVAVYNHYKR--INSDVKTTDIELQKSNIVMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTFLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 166



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 58/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313
           +T +ILFI  GAF                        S+            P DLL    
Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESSKDKDVGQLLKDILPQDLLKFGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+K     ILT+ ++ L+ QY++L + + ++L+  +++++ +A+
Sbjct: 296 IPEFVGRLPIVVTLQSLDKKALVQILTEPKNALVKQYQKLFEMDDVLLEIQDEALEHIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+  N+     GAR L+ ++E  +  + +    +   +  +I  E +  H
Sbjct: 356 KAIERNT-----GARGLRAILEEAMLGVMYDIPSMTNVEKCIIGKEVIAEH 401


>gi|12322572|gb|AAG51286.1|AC027035_9 CLP protease regulatory subunit CLPX, putative [Arabidopsis
           thaliana]
          Length = 650

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------------QQLPADLRD 49
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                  Q +  D   
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLVLSLIHSAQPIDDDDNV 310

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 311 ELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTV 370

Query: 110 A 110
           A
Sbjct: 371 A 371



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287
           TV   ++Q  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ V+    
Sbjct: 369 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 427

Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311
                    +  I+T  ILFI  GAF       V R  D                     
Sbjct: 428 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 487

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L
Sbjct: 488 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 547

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FTE +++ ++  A+     V + GAR L+ ++E +L +  F   D ++   
Sbjct: 548 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 602

Query: 413 VIDA 416
            IDA
Sbjct: 603 RIDA 606


>gi|307705961|ref|ZP_07642786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
 gi|307620471|gb|EFN99582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
          Length = 401

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372


>gi|117921101|ref|YP_870293.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           ANA-3]
 gi|166215205|sp|A0KYL8|CLPX_SHESA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117613433|gb|ABK48887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. ANA-3]
          Length = 426

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R     P D   EL   NILL+GPTG G
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKD-GVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           HV                           P DL   
Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKY 299

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED++ A+
Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A++  +     GAR L++++E +L D  +
Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386


>gi|139473950|ref|YP_001128666.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
 gi|166215214|sp|A2RF17|CLPX_STRPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134272197|emb|CAM30443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
          Length = 409

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|227538075|ref|ZP_03968124.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300772704|ref|ZP_07082574.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242151|gb|EEI92166.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300761007|gb|EFK57833.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 416

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQ DAK+ +++A+ N ++R     D  D E+   N+++VG TG GKT
Sbjct: 65  PLEIKQHLDQYVIGQDDAKKVISVAVYNHYKRLNQKVDKDDIEIEKSNLIIVGETGTGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A++   PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 125 LLAKTVAKILNVPFSIVDATVLTEAGYVGEDVESILTRLLQAA 167



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 60/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            K  ++
Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAV 236

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           NT +ILFI  GAF                                     P DL     +
Sbjct: 237 NTSNILFICGGAFDGIQKKIANRLRTQTVGYKMREDEQEIDLNNLYKYITPQDLKTFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  +L  L+K     ILT+ ++ LI QYK+L   EGI L+F ++    + D 
Sbjct: 297 PELIGRLPVLTYLNPLDKETLLSILTEPKNALIKQYKKLFNYEGIELEFDKNVYQFIVDK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYVR 420
           A         +GAR L+ + E ++ D  F    S  D+ + T+ I  +Y +
Sbjct: 357 ADEFK-----LGARGLRAICEAIMLDAMFEIPTSREDITDNTLHITLDYAK 402


>gi|15617074|ref|NP_240287.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681826|ref|YP_002468212.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471528|ref|ZP_05635527.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11131711|sp|P57548|CLPX_BUCAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763838|sp|B8D9Q3|CLPX_BUCA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25296054|pir||E84985 hypothetical protein clpX [imported] - Buchnera sp. (strain APS)
 gi|10039139|dbj|BAB13173.1| ATP-dependent clp protease ATP-binding subunit clpX [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219624669|gb|ACL30824.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311087366|gb|ADP67446.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 429

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311
           NT +ILFI +GAF      VS+                               P D    
Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E + L+F  +SI  +
Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+N N+     GAR L++++E +L +I +
Sbjct: 364 AKKAMNKNT-----GARGLRSIIEGILLNIMY 390


>gi|315226598|ref|ZP_07868386.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia
           denticolens DSM 10105]
 gi|315120730|gb|EFT83862.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia
           denticolens DSM 10105]
          Length = 424

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 59/215 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS--------- 290
           GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S    GS         
Sbjct: 193 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVASVPVKGSRKHEEQEMV 251

Query: 291 -INTDHILFIASGAF---------------------------------HVSRPADL---- 312
            INT  ILFI  GAF                                  +  P DL    
Sbjct: 252 QINTSDILFICGGAFVGLEDIIRHRLGKRETGFGTDWSSQEKSSDEILSLVTPDDLTEFG 311

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            LPE  GR PV   + SL   D   ILT+  + L+ Q+ +++  +G+ L FT+ +++++A
Sbjct: 312 LLPEFIGRMPVLATMSSLTVDDLVSILTEPANALVKQFAKILAVDGVELVFTDQALESIA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
             +++  +     GAR L+++MER+LED  +   D
Sbjct: 372 QRSLDRGT-----GARGLRSIMERILEDAMYQVPD 401



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 17/119 (14%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------PADLRD-EL 51
           P  I   LD Y+IGQ +AK+A+++A+ N ++R  L                 +DL + E+
Sbjct: 65  PSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVEI 124

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              N+LL+GPTG GKT ++  LAR+   PF  V+ T  TE GYVG +VE I++ L+  A
Sbjct: 125 SKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 183


>gi|56808899|ref|ZP_00366608.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pyogenes M49 591]
 gi|209559238|ref|YP_002285710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes NZ131]
 gi|238066660|sp|B5XL03|CLPX_STRPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209540439|gb|ACI61015.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           pyogenes NZ131]
          Length = 409

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L  SD   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|50914054|ref|YP_060026.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10394]
 gi|61211417|sp|Q5XCM0|CLPX_STRP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50903128|gb|AAT86843.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 409

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++GPTG G
Sbjct: 64  PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A  N+ R  R
Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     SR  D                  L+P
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ L+F + +++A+A  A
Sbjct: 298 EFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI F
Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380


>gi|219682381|ref|YP_002468765.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|254763839|sp|B8D805|CLPX_BUCAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219622114|gb|ACL30270.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
          Length = 429

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311
           NT +ILFI +G F      VS+                               P D    
Sbjct: 244 NTSNILFICAGTFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E + L+F  +SI  +
Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+N N+     GAR L++++E +L +I +
Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390


>gi|134302068|ref|YP_001122037.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049845|gb|ABO46916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 417

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ L +L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLVKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|311087864|gb|ADP67943.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 429

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311
           NT +ILFI +GAF      VS+                               P D    
Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E + L+F  +SI  +
Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCTPKNALIKQYQTLFELENVKLEFNAESIQLI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+N N+     GAR L++++E +L +I +
Sbjct: 364 AKKAMNKNT-----GARGLRSIIEGILLNIMY 390


>gi|289523085|ref|ZP_06439939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503628|gb|EFD24792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 427

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 5/110 (4%)

Query: 3   LTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57
           +T NF    P EI S LD+Y++GQ+ AK+ +++A+ N ++R       +D  E+   NIL
Sbjct: 66  MTQNFVLPKPSEIKSYLDQYVVGQEYAKKVLSVAVHNHYKRIFKGKKGKDDVEVQKSNIL 125

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+
Sbjct: 126 LLGPTGCGKTLLAQTLAQMLNVPFAIADATTLTEAGYVGEDVENILVRLL 175



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG  S+V  K G          +
Sbjct: 188 GIVYIDEIDKIARKSYSPSITRDVSGEGVQQGLLRLLEGTVSNVPPKGGRKHPYQDFIQV 247

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                     +P DL+    
Sbjct: 248 DTSNILFICGGAFDGIENIIAKRINKRVIGFGGDIIGKKVEASWKILKEVQPEDLMMYGF 307

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L+ L++     IL + +++L+ QY+EL   EG+ L+FTE ++ A+A 
Sbjct: 308 IPEFIGRIPVIVPLEGLHEESLVHILLEPKNSLVKQYQELFSYEGVELEFTEAALKAIAH 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A    +     GAR L+++ME ++ DI +   ++
Sbjct: 368 QAQERKT-----GARGLRSIMENLMLDIMYELPNI 397


>gi|22298053|ref|NP_681300.1| ATP-dependent protease ATP-binding subunit [Thermosynechococcus
           elongatus BP-1]
 gi|46576560|sp|Q8DLI1|CLPX_THEEB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22294231|dbj|BAC08062.1| ATP-dependent protease ATPase subunit [Thermosynechococcus
           elongatus BP-1]
          Length = 440

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD----ELMPKNILLVGPTG 63
           PR+I   LD++++GQ +AK+ +A+A+ N ++R  L  +D R     EL   NILL+GPTG
Sbjct: 81  PRQIKEFLDKHVVGQHEAKKILAVAVYNHYKRLSLLDSDQRGDDNVELQKSNILLIGPTG 140

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT  ++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V E++R
Sbjct: 141 SGKTLSAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQNANMDVEEAQR 196



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 61/224 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 197 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQDCIQI 256

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R AD+L            
Sbjct: 257 DTTNILFICGGAFVGLEKTIEQRVGKKAMGFVRDGEPLPKEKRSADILKQLEPHDLVKYG 316

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L+ L+ +    ILT  ++ L+ QY++LM+ + + L F   +++A+A
Sbjct: 317 MIPEFIGRIPVVAVLEPLDVAALADILTQPQNALLKQYQKLMRMDSVELRFEPAAVEAIA 376

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
             A    +     GAR L+ ++E ++ D+ +   S  DL+E T+
Sbjct: 377 QEAYRRKT-----GARALRAIVEEIMLDVMYELPSRKDLRECTI 415


>gi|308177633|ref|YP_003917039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
 gi|307745096|emb|CBT76068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
          Length = 430

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 13/115 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------------LRD-ELMPKN 55
           PREI   L  Y+IGQ++AKRA+++A+ N ++R     D            L D E+   N
Sbjct: 64  PREIFDSLQEYVIGQENAKRALSVAVYNHYKRIHGNQDHGPVAALTNEDPLDDVEVSKSN 123

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           I+L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 IMLIGPTGCGKTYLAQSLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAA 178



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 188 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQDFIQL 247

Query: 292 NTDHILFIASGAFH-----VS---------------------------RPADLL-----P 314
           +T +ILFI +GAF      +S                           RP DLL     P
Sbjct: 248 DTTNILFIVAGAFAGLEEIISSRAGQKGIGFGAPLTALKSATASYSDVRPEDLLKFGLIP 307

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   ++ L+K     +LT+ ++ L+ QY+++ + +G+ L F + +++A+A++A
Sbjct: 308 EFIGRLPVITTVEHLDKDALVRVLTEPKNALLKQYQKMFQMDGVALSFDQSALEAIAELA 367

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +       + GAR L++++E  L  + F
Sbjct: 368 I-----ARETGARGLRSILEETLGGVMF 390


>gi|259507909|ref|ZP_05750809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium efficiens YS-314]
 gi|259164404|gb|EEW48958.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium efficiens YS-314]
          Length = 422

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLR-----DELMPKNILLV 59
           P EI + LD+Y++GQ  AKR +++A+ N ++R    +Q+    R      EL+  NILL+
Sbjct: 63  PSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILLL 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 173



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  + G          +
Sbjct: 183 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 242

Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312
           +T +ILFI +GAF                     V+              RP DL     
Sbjct: 243 DTTNILFIVAGAFSGLEKIIGERRGKKGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGL 302

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+  ++L+ QYK L + +  +L FT+D+++A+AD
Sbjct: 303 IPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIAD 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +A+   +     GAR L+ ++E +L  I +   D  + T VVI  E  R
Sbjct: 363 LALERKT-----GARGLRAILEEILVPIMYDIPDRDDVTEVVITGEVAR 406


>gi|311086778|gb|ADP66859.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 429

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311
           NT +ILFI +GAF      VS+                               P D    
Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E + L+F  +SI  +
Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+N N+     GAR L++++E +L +I +
Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390


>gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 426

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-----------ELMPK 54
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R  Q+ PA               EL   
Sbjct: 61  TPTEIKAFLDDYVIGQDQAKKVLSVAVYNHYKRIYQKKPAARPRPGVKAQGSEDVELQKS 120

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 176



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 65/216 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI  +  G+    +R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 186 GIVYIDEIDKIARK--GDTPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 243

Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313
            ++T +ILFI  GAFH                                  ++ P DL+  
Sbjct: 244 QVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFGARITHREERSVGELLAMAEPEDLMKF 303

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L + D  +ILT  ++ L+ QY++L + E + L F+++S+ A+
Sbjct: 304 GMIPEFIGRLPMVATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVME----RVLEDISF 402
           A  A+  NS     GAR L+ +ME     V+ D+ F
Sbjct: 364 AREAMRRNS-----GARGLRAIMEDAMLEVMYDVPF 394


>gi|294786959|ref|ZP_06752213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia
           denticolens F0305]
 gi|294485792|gb|EFG33426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia
           denticolens F0305]
          Length = 462

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 59/222 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS--------- 290
           GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S    GS         
Sbjct: 231 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVASVPVKGSRKHEEQEMV 289

Query: 291 -INTDHILFIASGAF---------------------------------HVSRPADL---- 312
            INT  ILFI  GAF                                  +  P DL    
Sbjct: 290 QINTSDILFICGGAFVGLEDIIRHRLGKRETGFGTDWSSQEKSSDEILSLVTPDDLTEFG 349

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            LPE  GR PV   + SL   D   ILT+  + L+ Q+ +++  +G+ L FT+ +++++A
Sbjct: 350 LLPEFIGRMPVLATMSSLTVDDLVSILTEPANALVKQFAKILAVDGVELVFTDQALESIA 409

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             +++  +     GAR L+++MER+LED  +   D ++ + V
Sbjct: 410 QRSLDRGT-----GARGLRSIMERILEDAMYQVPDREDVSQV 446



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 17/119 (14%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------PADLRD-EL 51
           P  I   LD Y+IGQ +AK+A+++A+ N ++R  L                 +DL + E+
Sbjct: 103 PSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVEI 162

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              N+LL+GPTG GKT ++  LAR+   PF  V+ T  TE GYVG +VE I++ L+  A
Sbjct: 163 SKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 221


>gi|296139186|ref|YP_003646429.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Tsukamurella
           paurometabola DSM 20162]
 gi|296027320|gb|ADG78090.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tsukamurella
           paurometabola DSM 20162]
          Length = 425

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDE---LMPKNILLVGPTG 63
           P EI   LD Y+IGQ  AKR +A+A+ N ++R Q     D R E   L   NIL++GPTG
Sbjct: 64  PVEIRDFLDNYVIGQDSAKRNLAVAVYNHYKRIQAGERKDARGESVELAKSNILMLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 CGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 62/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 239

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 240 DTTNVLFIVAGAFAGLEKVVGDRIGKRGLGFGTEVRSKAEVDTVDHFADVLPEDLIKFGL 299

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY+ L + +G+ L+F ED++ A+AD
Sbjct: 300 IPEFIGRLPVIASVSNLDKESLVSILSEPKNALVKQYERLFEMDGVELEFDEDALGAIAD 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
            A+ L  T    GAR L+ +ME VL  + F   S  D+ +  VV+  E VR
Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLNPVMFDIPSRDDVAK--VVVTGETVR 403


>gi|254468834|ref|ZP_05082240.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta
           proteobacterium KB13]
 gi|207087644|gb|EDZ64927.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta
           proteobacterium KB13]
          Length = 417

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 67/100 (67%), Gaps = 3/100 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI  +L+ +IIGQ  AK+++++A+ N ++R  L ++  D ++   NILL+GPTG GKT
Sbjct: 66  PQEIFDQLNHHIIGQNHAKKSLSVAVYNHYKR--LGSNSDDIKIAKSNILLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +++ LA     PF+  + T  TE GYVG +VE I++ L+
Sbjct: 124 LLAQSLASFLNVPFVIADATTLTEAGYVGEDVENIMQKLL 163



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  I
Sbjct: 176 GIIYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQI 235

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311
           +T +ILFI  GAF                    +V+   D                    
Sbjct: 236 DTSNILFICGGAFDGLEKVIQRRLESNSIGFGANVASKNDSRTTYQLLKETESEDLVKFG 295

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L+      IL + ++ LI QYK+L + EG+ L+F + ++  +A
Sbjct: 296 LIPEFIGRLPVISALEPLDIDALTKILIEPKNALIKQYKKLFEIEGVELEFRDQALIHIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
             A++ N+     GAR L++++E  L+D+ F   SD   + V+ID + +
Sbjct: 356 KKALDRNT-----GARGLRSILEETLQDVMFDIPSDKTIEKVIIDEKTI 399


>gi|163781837|ref|ZP_02176837.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883057|gb|EDP76561.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 413

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DK VA+ SG    ++R    EGVQ+ LL ++EG+  +            ++ 
Sbjct: 178 GIVYIDEIDK-VAKKSGINPSITRDVSGEGVQQSLLKIIEGTVANVPPQGGRKHPHQEFI 236

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            I+T  ILFI  GAF                                 +  P DL+    
Sbjct: 237 QIDTTDILFICGGAFVGLEEIIKHRIGKSTMGFESSIKKVEEEDNVVALVEPDDLIKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L + D   IL + ++ L+ QYK+L + +G+ L+FTE+++  +A+
Sbjct: 297 IPEFVGRLPVITTLDELTQEDLVRILVEPKNALVKQYKKLFEIDGVELEFTEEALKEIAN 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+ ++E V+ +I F    +++ K V+ID + V
Sbjct: 357 EAIRRKT-----GARGLRAILEDVMTEIMFEIPSMRDVKKVIIDKDTV 399



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTG 63
           +P  I S LD Y+IGQ+ AK+ +++A+ N ++R   ++   DL   E+   NILL+GPTG
Sbjct: 62  TPERIKSILDEYVIGQERAKKVLSVAVYNHYKRIKAKEAGLDLDGVEVEKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+
Sbjct: 122 SGKTLMAKTLAKILNVPFAIADATSLTEAGYVGEDVENVLTRLL 165


>gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
 gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
          Length = 433

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 65  MKPKEIKAFLDDYVIGQDNAKKVLSVAVYNHYKRITSRKKMDVDVQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 TYLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 177 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 236

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           INT +ILFI  GAF                                    + P DL    
Sbjct: 237 INTTNILFICGGAFDGLEKIIERRLSAGSIGFNAEIVDKNKTDIDDLLKKTLPQDLVKFG 296

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+ V L+ L++     ILT+ ++ L+ QY++L + + + L+ T ++++ +A
Sbjct: 297 LIPEFIGRVPITVSLELLDREALVKILTEPKNALVKQYQKLFELDDVKLELTREAVERIA 356

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++AV   +     GAR L+++ME V+ ++ +
Sbjct: 357 ELAVERKT-----GARGLRSIMESVMMELMY 382


>gi|255321827|ref|ZP_05362977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           showae RM3277]
 gi|255300931|gb|EET80198.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           showae RM3277]
          Length = 412

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           N +P+E+ + LD Y+IGQ  AK+  ++ + N ++R     ++ D  E+   NILLVGPTG
Sbjct: 61  NLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGEIEDDTEISKSNILLVGPTG 120

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 121 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 167



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 177 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 236

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILF+  GAF                      R  D                  L+P
Sbjct: 237 DTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDKENLLDALESDDLVHFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + + D   ILT+ ++ ++ QY++L   +   L F ++++  +A +A
Sbjct: 297 ELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLFAIDRANLKFDDEALKEVARLA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME V+ DI +   +L    VVI  E V
Sbjct: 357 IERKT-----GARGLRSIMEEVMTDIMYELPELAGYDVVITKEVV 396


>gi|237785949|ref|YP_002906654.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|259491254|sp|C4LJV6|CLPX_CORK4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237758861|gb|ACR18111.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 422

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 10/110 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           P +IV  L  Y+IGQ  AKR +A+A+ N ++R Q  AD  D        E+   NIL++G
Sbjct: 65  PSQIVDFLGDYVIGQDAAKRTLAVAVYNHYKRIQ--ADENDHHKSDDDIEIAKSNILMLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 PTGSGKTYLAQTLARMLDVPFAMTDATSLTEAGYVGEDVENILLKLLQAA 172



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 182 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQL 241

Query: 292 NTDHILFIASGAF--------------------HVS-------------RPADL-----L 313
           +T ++LFI +GAF                    +VS             +P DL     +
Sbjct: 242 DTKNVLFIVAGAFAGLEKVIGERRGKQGLGFGANVSSKEENELDAFSYVQPEDLVKFGLI 301

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   +  L++     +LT+ +++L+ QY  L+  +G+ L   E +++A+AD 
Sbjct: 302 PEFIGRLPVVATVNDLDREALVRVLTEPKNSLVKQYSRLLDMDGVTLTMEEGALNAIADK 361

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A+   +     GAR L+ ++E +L  + F   D ++ T VVI  E V
Sbjct: 362 AIERGT-----GARGLRAILEEILGPVMFEVPDSEDVTEVVISEECV 403


>gi|71892028|ref|YP_277758.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796134|gb|AAZ40885.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 419

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 16/116 (13%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------L 51
           KLT   +P EI + LD Y+IGQ+  K+ +A+A+ N ++R      LR+E          L
Sbjct: 61  KLTKYPTPCEIKNYLDDYVIGQEYTKKVLAVAVYNHYKR------LRNEKTCINSNGTKL 114

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              NILL+GPTG GKT ++  LAR    PF   + T  TE GYVG +VE +++ L+
Sbjct: 115 FKSNILLIGPTGSGKTLLAETLARFLNVPFSISDATTLTEAGYVGEDVENVVQKLL 170



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG++ +            ++  +
Sbjct: 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTTAAVPPQGGRKHPQQEFIQV 242

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T +ILFI  GAF                                        P DL+  
Sbjct: 243 DTTNILFICGGAFFGLNQIIQQRTTNKRTIGFRVLENNDTTKNIEHSLLTQIEPEDLIKF 302

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L + +   IL + ++ LI QY+ L   +G+ L+F+E S+ A+
Sbjct: 303 GLIPEFVGRLPIVSTLDELKEKELIKILKEPKNALIKQYEMLFHIDGVKLEFSETSLTAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A      N+    IGAR L+ ++E +L D+ +
Sbjct: 363 AK-----NAMKKKIGARGLRAILENILLDVMY 389


>gi|58584809|ref|YP_198382.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|81311625|sp|Q5GS84|CLPX_WOLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58419125|gb|AAW71140.1| ATP-dependent protease Clp, ATPase subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 426

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  +
Sbjct: 183 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 242

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T++ILFI  GAF                                  H  +P DL+    
Sbjct: 243 DTNNILFICGGAFEGLNKIIEARKKGTSVGFGADISQSKEQKKKNTLHDVQPEDLIKFGL 302

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+  D   +L +  + LI QYK L+    + L+F++++I A+A+
Sbjct: 303 IPEFVGRVPITAVLDELDHEDLVHVLIEPRNALIKQYKALLAFSKVNLEFSDEAISAIAE 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
            A++  +     GAR L+ ++E +L D+ ++A +   +  T+VI  E V L
Sbjct: 363 KAMSYKT-----GARMLRAILESLLLDVMYTAGNGGFEGSTIVITKEMVEL 408



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P +I   L ++++GQ+ A+  +++A+ N  +   Q  A    E+   N++L+GPTG GKT
Sbjct: 71  PEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMAQFNAISDVEIEKSNVMLIGPTGSGKT 130

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 131 LLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVAKAQR 182


>gi|42782921|ref|NP_980168.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
          cereus ATCC 10987]
 gi|42738848|gb|AAS42776.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
          cereus ATCC 10987]
          Length = 76

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 51/58 (87%)

Query: 3  LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
          +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++G
Sbjct: 14 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIG 71


>gi|311086201|gb|ADP66283.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 429

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311
           NT +ILFI +GAF      VS+                               P D    
Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKGKKQKKSEDFLLKQVEPEDLIKF 303

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E + L+F  +SI  +
Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+N N+     GAR L++++E +L +I +
Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390


>gi|217967476|ref|YP_002352982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           turgidum DSM 6724]
 gi|226706585|sp|B8E291|CLPX_DICTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|217336575|gb|ACK42368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           turgidum DSM 6724]
          Length = 411

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++  I
Sbjct: 174 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLRIVEGTIANVPPQGGRKHPYQEFIQI 233

Query: 292 NTDHILFIASGAFH-----------VSR-----------------------PADLL---- 313
           NT  ILFIA G+F            VS                        P DL+    
Sbjct: 234 NTKDILFIAGGSFEGIEKIVEKRLDVSNIGFGAQIEPKNRKSLTQILNHIIPEDLIKFGM 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GRFPV   L+ L++     ILT+ ++ L+ QYK L+  EG+ ++FT++++ A+  
Sbjct: 294 IPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSMEGVEINFTDEALKAIVK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A++  +     GAR L+ VME ++ D+ +   +L  K   +  E V
Sbjct: 354 EAIDKAT-----GARGLRAVMEELMLDLMYELPNLGIKKFTVTPELV 395



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + + + +  E+   N+LL+GPTGVGK
Sbjct: 61  PHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMRSKITEDVEIQKSNVLLIGPTGVGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++  LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNA 164


>gi|67923460|ref|ZP_00516937.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
 gi|67854695|gb|EAM49977.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
          Length = 444

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P EI   LD Y+IGQ +AK+ +++A+ N ++R  L    + E       L   NILL+GP
Sbjct: 82  PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKKGEQDQDNIELQKSNILLMGP 141

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 TGSGKTLLAQTLAQILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 199



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 63/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 259

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R ADL+            
Sbjct: 260 DTSNILFICGGAFVGLDRVIEQRIGKKSMGFVRPGEGQSKEERTADLMQRVEPDDLVKFG 319

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L +     ILT   + L+ QY++L+  + + L+F+ +++ A+A
Sbjct: 320 MIPEFVGRIPVMAALNPLTEETLIAILTKPRNALVKQYQKLLNMDNVELEFSPEAVKAIA 379

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
             A    +     GAR L+ ++E ++ D+ +   S  D+Q+   +I  E V
Sbjct: 380 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVQK--CMITGEMV 423


>gi|291295951|ref|YP_003507349.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Meiothermus
           ruber DSM 1279]
 gi|290470910|gb|ADD28329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           ruber DSM 1279]
          Length = 398

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 53/228 (23%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
           +Q  E  GI+++DE DKI AR S N      VS EGVQ+ LL ++EG+  +V  + G   
Sbjct: 162 VQAAEK-GIIYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKH 219

Query: 290 ------SINTDHILFIASGAF----------------HVSRPAD---------------- 311
                 ++NT +ILFI  GAF                  +RP                  
Sbjct: 220 PHQEFIALNTKNILFILGGAFDGLERIVQSRVDQNPIGFTRPKKTEEKPEVIPEDLVRFG 279

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV V L++L++     ILT+  + LI QY+EL++ EGI L FT  ++  +A
Sbjct: 280 LIPEFVGRMPVMVQLEALDEEALVRILTEPRNALIRQYQELLRMEGIELRFTPGALREIA 339

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             A+   +     GAR L+ V+E+ + ++ F       K VV D  ++
Sbjct: 340 RRALKRGT-----GARGLRAVIEKAMVELMFELPTSGIKEVVFDLPHL 382



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI S LD+Y+IGQ+  K+ +++A+ N ++R   P     E+   N+LL+GPTG GKT 
Sbjct: 60  PAEIKSFLDQYVIGQELPKKTLSVAVYNHYKRLLHP---EAEVQKSNVLLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++  LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 117 LAETLARMLDVPFAIADATTLTEAGYVGEDVENVLLRLLQAA 158


>gi|261366991|ref|ZP_05979874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Subdoligranulum variabile DSM 15176]
 gi|282571109|gb|EFB76644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Subdoligranulum variabile DSM 15176]
          Length = 451

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 65/104 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD+Y+IGQ  AK+ +A+++ N ++R     +   EL   N+L++GP+G GK
Sbjct: 90  LTPAEIKAGLDQYVIGQDAAKKVLAVSVYNHYKRILSGQESSVELQKSNVLMLGPSGTGK 149

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 150 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 193



 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   V  EGVQ+ LL +VEG  S+V    G          I
Sbjct: 203 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKIVEGTVSNVPPNGGRKHPQQEFIQI 262

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           NT +ILFI  GAF                                        P DL   
Sbjct: 263 NTKNILFICGGAFDGLEKLIQKRTDNASMGFGSQLRTTLDKDETRQKLLKKVEPDDLVRF 322

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L  L++     +LT+ +++++ QYKEL+  +   L FT+ ++ A+
Sbjct: 323 GLIPELIGRLPVVTVLDPLDEDALVRVLTEPKNSIVRQYKELLHLDNAELVFTDAALHAI 382

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A   V   S     GAR L++V+E +L  I +   SD     V IDA+ V
Sbjct: 383 AKKTVERKS-----GARGLRSVVEDLLIPIMYDIPSDASITKVTIDADTV 427


>gi|160881660|ref|YP_001560628.1| ATP-dependent protease ATP-binding subunit [Clostridium
           phytofermentans ISDg]
 gi|160430326|gb|ABX43889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           phytofermentans ISDg]
          Length = 482

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GIVF+DE DKI  + S N   VS E VQ+ LL L+EGS V    G           +INT
Sbjct: 239 GIVFIDEIDKIAKKKSTNNRDVSGESVQQGLLKLLEGSDVEVPVGATSKNAMVPLTTINT 298

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 299 KNILFICGGAFPDLDKIIKARLNKQSSIGFSADLKDKYDDDPNLLQKVAVDDLREFGMIP 358

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+SL K     IL + ++ ++ QYK+L+  + + L+F + +++A+A+ A
Sbjct: 359 EFLGRLPVVYSLESLTKDMLTKILIEPKNAILKQYKKLLALDEVDLNFDQGALEAIAEKA 418

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L+ ++E  + DI +
Sbjct: 419 MEKKT-----GARALRAIIEEFMLDIMY 441



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 15/157 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM------PKNILLVGP 61
           +P  I + LD ++IGQ  AK+ +++A+ N ++R     D    LM        N+L++GP
Sbjct: 121 APHIIKASLDEFVIGQNHAKKVISVAVYNHYKRVAKLKDTEHPLMEDVDIEKSNMLMIGP 180

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT + + LARL   P    + T  TE GY+G +VE ++  L+  A N V ++    
Sbjct: 181 TGSGKTYLVKTLARLLNVPLAITDATSLTEAGYIGDDVESVLSKLLAAADNDVEKA---- 236

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             EQ  +  +E  +D +  K +T+N R+V  + ++ G
Sbjct: 237 --EQGIVFIDE--IDKIAKKKSTNN-RDVSGESVQQG 268


>gi|71905873|ref|YP_283460.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|71845494|gb|AAZ44990.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB]
          Length = 360

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 17/188 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L  ++IGQ DAK+ +A+A+   +RR    A+   EL   NILL+GPTG GK
Sbjct: 29  LKPSEIVRRLSDHVIGQDDAKKTLAVAIYAHFRRMANIAEDSVELTKSNILLIGPTGTGK 88

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +   LAR+   PF+  + T   +  +VG  +E I+  L+D A + +  ++R     DE
Sbjct: 89  TLLCETLARILDVPFVTADATSLAQTQFVGDEIEAILHRLLDRANDDLALAQRGIVFVDE 148

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V +  ++  E R       + A     E    +L+DG    + ID      +++I    I
Sbjct: 149 VDKLKAVGGESRATSGESVQHALLKIMEGAPVRLKDG----RHID------TTNI--LFI 196

Query: 182 PGGASVGI 189
            GGA VG+
Sbjct: 197 CGGAFVGL 204



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGA 303
           GIVF+DE DK+ A   G     S E VQ  LL ++EG+ V  K G  I+T +ILFI  GA
Sbjct: 142 GIVFVDEVDKLKAV-GGESRATSGESVQHALLKIMEGAPVRLKDGRHIDTTNILFICGGA 200

Query: 304 F----HV---------------------------SRPADLL-----PEIQGRFPVRVHLK 327
           F    H+                            +P DLL     PE  GR P+   L 
Sbjct: 201 FVGLDHILTKTHTFGFISTAEGDDQKILERLNARVKPTDLLEFGLIPEFAGRLPIVTRLH 260

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L++     ILT+ ++ +  Q++ ++  +G+ L    +    +A++A+   +     GAR
Sbjct: 261 DLSQDMLVRILTEPKNAIYKQFQAMLAADGVDLQVEPNVFRQMAELAIEYKA-----GAR 315

Query: 388 RLQTVMERVLEDISFSASD 406
            L+ + E ++ D+ ++  D
Sbjct: 316 SLRGIFEEMMVDVMYAVPD 334


>gi|172058155|ref|YP_001814615.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium
           sibiricum 255-15]
 gi|229889852|sp|B1YJW0|CLPX_EXIS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171990676|gb|ACB61598.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Exiguobacterium sibiricum 255-15]
          Length = 421

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + L+ Y+IGQ+ AK+++++A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 64  PHEIRATLNDYVIGQEKAKKSLSVAMYNHYKRINAGGRADDVELSKSNIVMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTMARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 57/225 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T +ILFI  GAF                                   + P DL     +
Sbjct: 236 DTTNILFIVGGAFDGIDQSIKRRLGKKVIGFGNDSENRNLTQKEILAAALPEDLQKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ QYK++++ + + LDFTED++  +A +
Sbjct: 296 PEFIGRLPVMATLEPLDEEALVQILTKPKNALVKQYKKMLQLDDVELDFTEDALVEIAKL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
           A+   +     GAR L++++E  + DI F     ++   V+I AE
Sbjct: 356 AIERKT-----GARGLRSIIEETMLDIMFEIPSREDIAKVIITAE 395


>gi|282883080|ref|ZP_06291680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           lacrimalis 315-B]
 gi|300813661|ref|ZP_07093983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|281297057|gb|EFA89553.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           lacrimalis 315-B]
 gi|300512203|gb|EFK39381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 409

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%)

Query: 4   TFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNIL 57
           T NF    P +I   LD Y++ Q+ AK+A+A+A+ N ++R      + +   EL   NIL
Sbjct: 52  TENFDLPKPAQIKHILDSYVVKQESAKKALAVAVYNHYKRINSNKKIENSDIELQKSNIL 111

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 112 MIGPTGSGKTLLAQTLAKLLHVPFAICDATTLTEAGYVGEDVENIILKLIQNA 164



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 174 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQV 233

Query: 292 NTDHILFIASGAF-------------------------HVSRPA-------------DLL 313
           +T +ILFI  GAF                         ++ R A              L+
Sbjct: 234 DTTNILFIVGGAFDGLEKIIEQRTMKSSMGFEAAIYDKNIERKAILKKVETEDLLKFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV + L+ L++     ILT  ++ L+ QYKELMK + + L F +D++  +A  
Sbjct: 294 PELIGRLPVTITLEELDEDALVEILTKPKNALVKQYKELMKLDNVDLIFDDDALRDIAKK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L+ V+E  + +I +
Sbjct: 354 AIEKKA-----GARGLRGVIENTIMNIMY 377


>gi|56751592|ref|YP_172293.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81301335|ref|YP_401543.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
 gi|61211388|sp|Q5N1P7|CLPX_SYNP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93141243|sp|O34126|CLPX_SYNE7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56686551|dbj|BAD79773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81170216|gb|ABB58556.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
          Length = 449

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 5/116 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD--ELMPKNILLVGPTG 63
           P +I   LD ++IGQ +AK+ +++A+ N ++R   QQ   +  +  E+   NILL+GPTG
Sbjct: 89  PHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSNILLIGPTG 148

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+ VA   + E++R
Sbjct: 149 CGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQR 204



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 60/221 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T +ILFI  GAF                                    H+  P DL   
Sbjct: 265 DTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME-PEDLVQF 323

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    ILT+    L+ QY++LM  + + L+F +D+I+A+
Sbjct: 324 GLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAI 383

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           A  A    +     GAR L+ ++E ++ ++ +     Q+ T
Sbjct: 384 AREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVT 419


>gi|269123535|ref|YP_003306112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
 gi|268314861|gb|ACZ01235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
          Length = 410

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGP 61
           FN   P++I  +LD YIIGQ+ AK+ +++A+ N ++R  +    D   E+   NILL+GP
Sbjct: 55  FNLLKPKQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKVDNDIEMQKSNILLIGP 114

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   P    + T  TE GYVG +VE ++  L+  A
Sbjct: 115 TGSGKTLLAQTLAKILDVPLAIADATTITEAGYVGDDVENVLLKLIKAA 163



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG  SSV  + G          I
Sbjct: 173 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTISSVPPQGGRKHPNQEMIEI 232

Query: 292 NTDHILFIASGAF-----------------------------------HVS----RPADL 312
           +T +ILFI  GAF                                   HV     R   +
Sbjct: 233 DTTNILFIVGGAFEGLESKIKRRLNKKQIGFGLNLDKNEDLDDMTIFEHVLPEDIRKFGI 292

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L  LNK     ILT  ++ +I QYK+  + EG+ L F ED+++ +A+
Sbjct: 293 IPELIGRLPVITALSELNKEALVSILTKPKNAIIKQYKKYFEIEGVELIFEEDAVEEIAE 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A+        IGAR L++++E  + D+ +     ++ K VVI  + +
Sbjct: 353 LALKRK-----IGARGLRSIIENTMLDLMYEIPSKEDIKKVVITKDMI 395


>gi|76789445|ref|YP_328531.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           A/HAR-13]
 gi|237805056|ref|YP_002889210.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|123758566|sp|Q3KKY9|CLPX_CHLTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|76167975|gb|AAX50983.1| ClpX [Chlamydia trachomatis A/HAR-13]
 gi|231273356|emb|CAX10271.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis B/TZ1A828/OT]
          Length = 419

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R + L  D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238

Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312
            +NT++ILFI  GAF                  S   DL                     
Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++++ A+A
Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L  ++E +L D+ F
Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384


>gi|222824391|ref|YP_002575965.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX
           [Campylobacter lari RM2100]
 gi|222539612|gb|ACM64713.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX
           [Campylobacter lari RM2100]
          Length = 411

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 4/117 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62
           + +P+E+ + LD+Y+IGQ  AK+  ++ + N ++R    ++L D   EL   NILLVGPT
Sbjct: 59  DITPKELKAYLDKYVIGQDRAKKIFSVGVYNHYKRL-FRSNLEDDDTELAKSNILLVGPT 117

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 118 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 174



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 54/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+F+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 175 GIIFIDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 234

Query: 292 NTDHILFIASGAFH-----VSR--------------------------PADL-----LPE 315
           +T +ILF+  GAF      + R                          P DL     +PE
Sbjct: 235 DTTNILFVCGGAFDGISDIIKRKLGDNVMGFFSDDKKSEKEALLQKLEPDDLVHFGLIPE 294

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           + GR  V   L+ L++     ILT+ ++ +I QY++L   + + L F +D++  +A +++
Sbjct: 295 LIGRLHVLASLEELDEESMVRILTEPKNAIIKQYQKLFAIDNVELKFEDDALREIAKLSL 354

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
              +     GAR L++++E ++ D+ F   +    ++VI  E ++
Sbjct: 355 ERKT-----GARGLRSIIEEMMVDLMFDLPEYNGYSIVITKEVIK 394


>gi|237803135|ref|YP_002888329.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis B/Jali20/OT]
 gi|231274369|emb|CAX11164.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 419

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R + L  D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 60/211 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSV-----------STKYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG+             S +Y 
Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPSQEYI 238

Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312
            +NT++ILFI  GAF                  S   DL                     
Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++++ A+A
Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L  ++E +L D+ F
Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384


>gi|188590512|ref|YP_001921997.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778366|ref|ZP_04821286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|238691974|sp|B2UX12|CLPX_CLOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|188500793|gb|ACD53929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082681|gb|EES48571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 429

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+++++A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 63  PNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313
           NT +ILFI  GAF        + +R                          P DLL    
Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKHEKDIGKLLKEIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+K     ILT  ++ L+ QYK+L + + + L+F  +++ ++A+
Sbjct: 295 IPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L+ ++E ++ +I +   SD Q   V+I  E ++
Sbjct: 355 EAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIK 398


>gi|187933551|ref|YP_001887075.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum B str. Eklund 17B]
 gi|238691649|sp|B2TPB8|CLPX_CLOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187721704|gb|ACD22925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum B str. Eklund 17B]
          Length = 429

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+++++A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 63  PNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 LLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313
           NT +ILFI  GAF        + +R                          P DLL    
Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAQIQGKHEKDIGKLLKEIMPGDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L+SL+K     ILT  ++ L+ QYK+L + + + L+F  +++ ++A+
Sbjct: 295 IPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            A+   +     GAR L+ ++E ++ +I +   SD Q   V I  E ++
Sbjct: 355 EAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVTITEECIK 398


>gi|25028847|ref|NP_738901.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           efficiens YS-314]
 gi|46576594|sp|Q8FN57|CLPX_COREF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|23494133|dbj|BAC19101.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Corynebacterium efficiens YS-314]
          Length = 426

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLR-----DELMPKNILLV 59
           P EI + LD+Y++GQ  AKR +++A+ N ++R    +Q+    R      EL+  NILL+
Sbjct: 66  PSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILLL 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 GPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 176



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  + G          +
Sbjct: 186 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 245

Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312
           +T +ILFI +GAF                     V+              RP DL     
Sbjct: 246 DTTNILFIVAGAFSGLEKIIGERRGKKGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGL 305

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+  ++L+ QYK L + +  +L FT+D+++A+AD
Sbjct: 306 IPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIAD 365

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           +A+   +     GAR L+ ++E +L  I +   D  + T VVI  E  R
Sbjct: 366 LALERKT-----GARGLRAILEEILVPIMYDIPDRDDVTEVVITGEVAR 409


>gi|332708808|ref|ZP_08428779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya
           majuscula 3L]
 gi|332352350|gb|EGJ31919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya
           majuscula 3L]
          Length = 448

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 11/122 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNIL 57
           PREI   LD ++IGQ++AK+ +++A+ N ++R  L                 EL   NIL
Sbjct: 82  PREIKRYLDDHVIGQEEAKKVLSVAVYNHYKRLSLLQSKAQGQGQGIIDDGIELQKSNIL 141

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E+
Sbjct: 142 LIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEA 201

Query: 118 RR 119
           +R
Sbjct: 202 QR 203



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 204 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 263

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R AD+L            
Sbjct: 264 DTSNILFICGGAFVGLDKVVEQRLGKRSMGFIQPGENQSKEKRTADILRHLQPDDLVKFG 323

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   ++ L++     ILT+ ++ L+ QY +L+K + + L+F  D+I ALA
Sbjct: 324 MIPEFIGRIPMVAVIEPLDEEALMAILTEPKNALVKQYMKLLKMDNVNLEFMPDAIRALA 383

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ ++ +
Sbjct: 384 QEAYRRKT-----GARALRGIVEELMLEVMY 409


>gi|307721395|ref|YP_003892535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979488|gb|ADN09523.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           autotrophica DSM 16294]
          Length = 414

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+FLDE DK+        I   VS EGVQ+ LL ++EGSSV+            ++ +I
Sbjct: 178 GIIFLDEVDKVSRMSENRSITRDVSGEGVQQALLKIIEGSSVNIPPKGGRKHPNQEFTAI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                   H  +  D                  L+P
Sbjct: 238 DTTNILFICGGAFDGLEEILKRKQGENVLGFGHDKKTKDEKKPTFDMVEPDDLVHYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+   L  + + D   ILT+ +++L+ QYK+L   + + L+F ED++ A+A  A
Sbjct: 298 ELVGRLPIIASLNEITEDDMVRILTEPKNSLVKQYKKLFAIDEVELNFEEDALRAIAQKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E  + DI +   +     V+I  E +
Sbjct: 358 IKRKT-----GARGLRAILEESMIDIMYELPEYSGYEVMITKEVI 397



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
            +P+E+ + L  YIIGQ+ A++ +++A+ N ++R       AD   E+   NILL+GPTG
Sbjct: 62  MTPKELDAFLGEYIIGQERARKLLSVAVYNHYKRIFKMHNAADDDTEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAA 168


>gi|282891305|ref|ZP_06299807.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498802|gb|EFB41119.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 415

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P+EI   LD YIIGQ +AK+ +++A+ N ++R +      +  E    N+LL GPTG 
Sbjct: 59  LKPKEIKERLDEYIIGQDNAKKTISVAVYNHYKRIRSANTDNNAIEFNKSNVLLFGPTGS 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT I++ LA +   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 GKTLIAKTLANILDVPFTIADATTLTEAGYVGEDVENIILRLLQAA 164



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI    +   I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           NT++ILFI  GAF                            ++ +DLL            
Sbjct: 234 NTENILFIVGGAFVNMEKIVAKRLGRSTIGFTTKDKETVDPTKKSDLLAKVEPEDLIQFG 293

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GRF    +   L  SD   IL+  ++ +  Q+  + + EG+ L FTE+++ A+A
Sbjct: 294 MIPEFVGRFNSIANCNELTVSDLVSILSKPKNAIAKQFMAMFEMEGVNLQFTEEALAAIA 353

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
             A+   +     GAR L+ ++E ++ D+ F   SD     +VID + V
Sbjct: 354 QKAIEAGT-----GARALRMILENIMRDLMFDVPSDPTISEIVIDYDVV 397


>gi|157804081|ref|YP_001492630.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           canadensis str. McKiel]
 gi|166215198|sp|A8EZR2|CLPX_RICCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157785344|gb|ABV73845.1| ATP-dependent protease ATP-binding subunit [Rickettsia canadensis
           str. McKiel]
          Length = 425

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I + L+ YI+GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICTILNDYIVGQDQAKKILAVAVYNHYKRLEYIQSGNNEVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFSMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF----------------------HVSRPAD-----------------L 312
           +T +ILFI  GAF                      +++R  +                 L
Sbjct: 236 DTSNILFICGGAFMGIDSIITARTNNSSIGFAANININREKNNSEILQALEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  + +   L     +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELIIENSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+         GAR L++++E +L D  +  ++L++  V I  E V
Sbjct: 356 KAL-----AKKTGARGLRSILEHLLLDSMYKVAELKKHRVTITKEVV 397


>gi|67458611|ref|YP_246235.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis
           URRWXCal2]
 gi|75536923|sp|Q4UMY8|CLPX_RICFE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|67004144|gb|AAY61070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rickettsia
           felis URRWXCal2]
          Length = 425

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I + L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITARTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  +     LD  E  I+A A 
Sbjct: 296 IPEFIGRLPIVTTLDELDKDALITILTKPKNAIVKQYQKQFE-----LDDAELVIEAAAL 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 351 EAIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|296125910|ref|YP_003633162.1| ATPase AAA [Brachyspira murdochii DSM 12563]
 gi|296017726|gb|ADG70963.1| ATPase AAA-2 domain protein [Brachyspira murdochii DSM 12563]
          Length = 604

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 11/104 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62
            +P+EIV+ELD+ +IGQ +AK+A+A+       R    +++P          NIL++GPT
Sbjct: 239 LTPKEIVAELDKTVIGQDEAKKALAVHAYLHCLRISGNKEIP-------FRSNILMIGPT 291

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           GVGKT + + LA + G PF + +VT  TE GYVG +VE ++ +L
Sbjct: 292 GVGKTYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNL 335



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 58/224 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290
           +GIVFLDE DKI   D+        S + VQ  LL ++ G  +   ++G           
Sbjct: 348 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 407

Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT +ILFI  GAF                                +    D       
Sbjct: 408 LMNTKNILFIFGGAFVGLDDIIKMRLKGENSLGFGSNAVINKLQKDRILSQVDVKDIEKY 467

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR P+ V L  L K + + ILT T+ + I++Y E  ++ G  L  T ++I+ +
Sbjct: 468 GMIPEFIGRIPIIVTLNELTKENLKDILTKTKESPIIKYTEFFRSIGKKLTVTSEAINFI 527

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            D A ++N     +GAR L++++E  + +I F+   ++  T+ +
Sbjct: 528 VDKASSMN-----MGARSLKSIVETAMVNILFNLDGIKGNTLTL 566


>gi|302390302|ref|YP_003826123.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermosediminibacter oceani DSM 16646]
 gi|302200930|gb|ADL08500.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermosediminibacter oceani DSM 16646]
          Length = 421

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQ+ AK+ +++A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 64  PSEIKEILDQYVIGQEKAKKILSVAVYNHYKRINSSVKTDDVELQKSNIIMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313
           +T +ILFI  GAF                                 +S+  P DLL    
Sbjct: 236 DTTNILFICGGAFEGIEKIIANRIGKKSIGFGAEIRSKEEKNVGELLSQIMPEDLLKFGM 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V L +L++     IL + ++ L+ QY++L + + + L+FT++++  +A 
Sbjct: 296 IPEFVGRVPIIVTLDALDEQALIRILKEPKNALVKQYQKLFEMDNVQLEFTDEALQVIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
            A+N  +     GAR L+ ++E V+ D+ +   S SD+ +  V
Sbjct: 356 EALNRKT-----GARGLRAILEEVMMDVMYEIPSRSDITKCVV 393


>gi|116621145|ref|YP_823301.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224307|gb|ABJ83016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 424

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 4/114 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P E+   LD+Y+IGQ+  K+ +A+A+ N  +R  +   +R+   EL   NILL+GPTG G
Sbjct: 67  PLEVKEFLDQYVIGQEATKKKLAVAVYNHCKRIHM-NRMRNSEVELQKSNILLIGPTGTG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A   V++ ++
Sbjct: 126 KTLMAQTLAKILDVPFAIVDATTLTEAGYVGEDVENIILKLLQAADGDVQKCQQ 179



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 65/218 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 180 GIIYIDEIDKICRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 239

Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309
           +T +ILFI  GAF                                            ++P
Sbjct: 240 DTTNILFICGGAFVGLEKVIARRTGKKSMGFLQEEEKGTGIRNTGVSGRRDIDLLTQAQP 299

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   L+ L++S    ILT  ++ +I QY++L + E + L F++
Sbjct: 300 IDLIKFGFIPEFIGRLPVSAVLEDLDRSALIQILTKPKNAIIKQYQKLFEFENVRLKFSD 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++ +A+AD+A++       +GAR L+ ++E ++ D+ +
Sbjct: 360 EATEAIADLAMDRK-----VGARGLRMILEDLMLDLMY 392


>gi|113474440|ref|YP_720501.1| ATP-dependent protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
 gi|123057080|sp|Q118P6|CLPX_TRIEI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110165488|gb|ABG50028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
          Length = 449

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60
           PREI + LD ++IGQ++ K+ +++A+ N ++R       +         EL   NILL+G
Sbjct: 84  PREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQKSNILLIG 143

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 144 PTGCGKTLLAQTLADLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLEVDEAQR 202



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 60/213 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF-------------------HVS------------------RPADL-- 312
           +T +ILFI  GAF                   H S                   P DL  
Sbjct: 263 DTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVDLMKQMEPNDLVK 322

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE+ GR P+   ++ L++     ILT  ++ L+ QY++L++ + + L+F ED++ A
Sbjct: 323 FGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRA 382

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 383 IAKEAFRRKT-----GARALRGIVEELMLDVMY 410


>gi|118618989|ref|YP_907321.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           ulcerans Agy99]
 gi|166214791|sp|A0PU31|CLPX_MYCUA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118571099|gb|ABL05850.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium
           ulcerans Agy99]
          Length = 426

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q      D      EL   NIL++GPT
Sbjct: 64  PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSHDSRCEAVELTKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A++  +     GAR L+ +ME VL  + +
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385


>gi|303328062|ref|ZP_07358501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861888|gb|EFL84823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
          Length = 429

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 6/108 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62
            SP+EI   LD Y+IGQ +AK+ +++A+ N ++R      L  D+  EL   NILLVGP+
Sbjct: 63  LSPQEIKDRLDEYVIGQHEAKKILSVAVHNHYKRVFYADALGHDV--ELEKSNILLVGPS 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 GSGKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           NT +ILFI  GAF                                      P DL     
Sbjct: 238 NTGNILFIVGGAFVGLDKIVESRMSGGSMGFGAKVRSSKETPLAELLEKIHPQDLVQFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+  H+  L++ D   ILT+ ++ L+ QY++L + + + L FT +++ A+A 
Sbjct: 298 IPEFVGRIPIITHVDELDEPDLVRILTEPKNALVRQYQKLFELDHVTLRFTPNALKAIAA 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ VME+++ DI F
Sbjct: 358 RAIERKT-----GARGLRNVMEKIMLDIMF 382


>gi|257063883|ref|YP_003143555.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia
           heliotrinireducens DSM 20476]
 gi|256791536|gb|ACV22206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia
           heliotrinireducens DSM 20476]
          Length = 444

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   L  +++GQ  AKRA+A+A+ N ++R  L     +   EL   N+LL+GPTG G
Sbjct: 88  PHEIFDLLSEHVVGQDAAKRALAVAVYNHYKRISLGQSHEEDDVELAKSNVLLLGPTGSG 147

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 148 KTLLAQTLARALQVPFAIADATTLTEAGYVGEDVENILLKLITAA 192



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 109/228 (47%), Gaps = 64/228 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  + G          I
Sbjct: 202 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEAAVPPQGGRKHPQQELIHI 261

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          V +                         P DL     
Sbjct: 262 DTTNILFILGGAFVGLADIVGQRVGKTGIGFTSELPESKKHEEAELLRKVLPEDLNKFGM 321

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L + D   ILT+ ++ L+ QYK +   E   L FT++++ A+A 
Sbjct: 322 IPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQYKRMFAFEDSELVFTDEALRAIAH 381

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDA 416
            AV+  +     GAR L+++ ERVL+DI F   DL E+    TVVI+A
Sbjct: 382 EAVDHGT-----GARGLRSICERVLQDIMF---DLPEQEGASTVVINA 421


>gi|283795999|ref|ZP_06345152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
 gi|291076644|gb|EFE14008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
          Length = 587

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  + +     VS E VQ++LL L+EGS V    GS           ++T
Sbjct: 355 GIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVDT 414

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
           ++ILFI  GAF                                   H +    R   ++P
Sbjct: 415 NNILFICGGAFPDLENIVKERLNKSSTMGFGAQLKGKYDDDPNLLGHATTEDLRKFGMIP 474

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ V L++L K     ILT+ ++ ++ QY++L+  + + L F ED++  +A+ A
Sbjct: 475 EFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLVFEEDALSWIAEEA 534

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           +       + GAR L+ ++E  ++DI +    D    +VVI   Y+  + G
Sbjct: 535 IR-----KETGARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLEKNGG 580



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD------ELMPKNILLVG 60
           +P  I S+LD+Y++GQ+ AK+ +A+A+ N ++R     A+  D      ++   NIL++G
Sbjct: 236 APHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIG 295

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  + +
Sbjct: 296 PTGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAEK 354


>gi|257093535|ref|YP_003167176.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046059|gb|ACV35247.1| ATPase AAA-2 domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 359

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 22/202 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P  IV  LD+Y+IGQ+DAK+ +A+A+ + +R+       R+ +   NILLVGP+G GKT
Sbjct: 33  TPSAIVRYLDQYVIGQEDAKKVLAVAVYSHYRKIATFHGDRESIAKSNILLVGPSGTGKT 92

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +   L+R+   PF+  + T   +  YV   +E ++  L+D A   + +++      DE+
Sbjct: 93  LLCDTLSRMLKVPFVTADATSLAQTKYVNEEIEAVLLRLLDKADGNIEDAQHGIIFIDEI 152

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDI 181
            +  + NA+ R +     + A     E    KL+D             +   D  N   I
Sbjct: 153 DKLKTSNAQARAISGESVQHALLKIMEGSPVKLKD-------------NCYIDTGNILFI 199

Query: 182 PGGASVGILNLSELFSKVMGSG 203
            GGA VG+ N   + SK  G G
Sbjct: 200 CGGAFVGLEN---IMSKTHGFG 218



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 43/201 (21%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIAS 301
            +GI+F+DE DK+   ++     +S E VQ  LL ++EGS V  K    I+T +ILFI  
Sbjct: 143 QHGIIFIDEIDKLKTSNA-QARAISGESVQHALLKIMEGSPVKLKDNCYIDTGNILFICG 201

Query: 302 GAF-------------------------------HVSRPAD-----LLPEIQGRFPVRVH 325
           GAF                                  +P D     L+PE  GR P+  +
Sbjct: 202 GAFVGLENIMSKTHGFGFIATSGDDNQNILDRLNKRVKPTDLFEFGLIPEFTGRLPIIAN 261

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  L K+    I++   +++  QY E+ + EG+ L       + +A++A+   +     G
Sbjct: 262 LHPLTKAMLVSIMSVPRNSIYRQYVEIFRGEGVELRIGPRVFEQIAEIAIEYKT-----G 316

Query: 386 ARRLQTVMERVLEDISFSASD 406
           AR L+ + E ++  I +   D
Sbjct: 317 ARSLRGIFEELITPILYIVPD 337


>gi|154502353|ref|ZP_02039413.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149]
 gi|153796978|gb|EDN79398.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 69/112 (61%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I  +LD Y++GQ+ AK+A+A+A+ N ++R    +    E+   N+L++GPTG GKT
Sbjct: 140 APHKIKGKLDEYVVGQEYAKKAMAVAVYNHYKRVATDSVDDIEIEKSNMLMIGPTGSGKT 199

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ +
Sbjct: 200 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 251



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ LL L+EGS V    G           ++NT
Sbjct: 252 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNT 311

Query: 294 DHILFIASGAF------------HVS---------------------------RPADLLP 314
            +ILFI  GAF            H +                           R   ++P
Sbjct: 312 KNILFICGGAFPDLEGIIKERLMHKTSMGFNAELKDQYDNDKDILSKVTVEDLRNFGMIP 371

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K  +  IL + ++ ++ QY++L+  + + LDF + +++A+A+ A
Sbjct: 372 EFIGRLPIIFTLKGLDKDMYVKILKEPKNAILKQYQKLLALDEVKLDFDDGALEAIAEKA 431

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +       + GAR L+ ++E  + DI +
Sbjct: 432 MK-----KETGARALRAIIEEFMLDIMY 454


>gi|312898488|ref|ZP_07757878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           micronuciformis F0359]
 gi|310620407|gb|EFQ03977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           micronuciformis F0359]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R Q  ++ +D    EL   NI++VGPTG
Sbjct: 65  TPHEIKKNLDDYVIGQEAAKKTLSVAVYNHYKRLQSNSN-KDKDDVELQKSNIVMVGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA+    PF   + T  TE GYVG +VE  +  L+  A
Sbjct: 124 SGKTLLAQTLAKFLDVPFAIADATSLTEAGYVGEDVENCLLKLIQAA 170



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 64/238 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTEANVPPQGGRKHPHQEMLQI 239

Query: 292 NTDHILFIASGAF----------------------HVSR------------PADL----- 312
           +T +ILFI  GAF                      H               P DL     
Sbjct: 240 DTTNILFICGGAFDGIDKTIRSRRTEKNMGFGADIHKKNEESVEELLKEIIPTDLQKFGL 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV V L  L++     ILT+ ++ L+ QY++++  + + L FT+D++ A+A+
Sbjct: 300 IPELIGRLPVLVTLNPLDEEAMIHILTEPKNALVKQYQKMLGMDDVKLTFTDDALKAIAE 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSAS---DLQE----KTVVIDAEYVRLHI 423
            A+   +     GAR L++++ER++ D+ F A    D++E    K  V+D +  +L +
Sbjct: 360 EALRRKT-----GARGLRSIIERIMLDVMFDAPSRKDVEECIVTKESVVDGKAPQLKL 412


>gi|256832189|ref|YP_003160916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
 gi|256685720|gb|ACV08613.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP--ADLRDE--LMPKNILLVGP 61
           P+EI   L+ YI+GQ  AK+++A+A+ N ++R      P   D  D+  L   NILL+GP
Sbjct: 64  PQEIFDFLEEYIVGQDTAKKSLAVAVYNHYKRITATDAPKVGDNHDDIDLAKSNILLIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++ +I
Sbjct: 182 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFITI 241

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-----------------LLP 314
           +T ++LFI +GAF                     ++ P D                 L+P
Sbjct: 242 DTSNVLFIVAGAFAGLEDIISQRTGKRGIGFGAPLALPGDSANILSRVMPEDLHKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L+      ILT+  + L+ QY+++   + + L+FT+D+I A+A+ A
Sbjct: 302 EFIGRLPVMTTVNELDVDALVSILTEPRNALVKQYRKMFALDDVDLEFTDDAIRAVAEQA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRL 421
           + L  T    GAR L++++E VL+ + F   S +D+++    + VV+D  Y  L
Sbjct: 362 L-LRGT----GARGLRSILEEVLQQVMFEVPSRTDVEKVLITREVVLDKVYPTL 410


>gi|260438108|ref|ZP_05791924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
 gi|292809589|gb|EFF68794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
          Length = 436

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P EI + LD Y++GQ +AK+ +A+++ N ++R      + D   EL   NIL++GPTG
Sbjct: 66  LKPMEIKALLDEYVVGQDNAKKVLAVSVYNHYKRIIHKDSVVDDGVELQKSNILMLGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 172



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 182 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTMASVPPQGGRKHPQQELIQI 241

Query: 292 NTDHILFIASGAFHVSR----------------------------------PADL----- 312
           +T +ILFI  GAF                                      P DL     
Sbjct: 242 DTTNILFICGGAFDGLEKIIENRMDQKSIGFNSIIADKTDFEIGEFFDKVLPQDLVKFGL 301

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L++     I+T+ ++ L+ QY++L + + + L+ TE+++ A+A 
Sbjct: 302 IPEFVGRIPVTVALDMLDEDALVKIITEPKNALVKQYRKLFEYDEVQLEITEEAVRAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            ++   +     GAR L+++ME+ + D+ +
Sbjct: 362 KSLERKT-----GARGLRSIMEKAMMDVMY 386


>gi|15604535|ref|NP_221053.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           prowazekii str. Madrid E]
 gi|6225170|sp|Q9ZCN1|CLPX_RICPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3861229|emb|CAA15129.1| ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX (clpX)
           [Rickettsia prowazekii]
 gi|292572325|gb|ADE30240.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           prowazekii Rp22]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICKILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQK 175



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 61/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEKSNNEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE--GIILDFTEDSIDAL 370
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  + +   +++D++  +++A+
Sbjct: 296 IPEFIGRLPIITTLDELDKEALITILTKPKNAIVKQYQKQFELDDADLVIDYS--ALEAI 353

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A+ A+     V   GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 354 AEKAL-----VKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|330443930|ref|YP_004376916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
 gi|328807040|gb|AEB41213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
          Length = 422

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y++GQ+ AK+ +A+A+ N ++R + L  +        N+LL+GPTG G
Sbjct: 69  LTPKEIKKHIDEYVVGQERAKKTIAVAVYNHYKRIRALLHNKHVSYGKSNVLLLGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 129 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQSA 173



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI  R + N + ++R    EGVQ+ LL ++EG++ +            +Y 
Sbjct: 183 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 240

Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT++ILFI  GAF                               H+    +       
Sbjct: 241 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADFSQKDRDHLLAKVETEDLIAF 300

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E + L F ++++ A+
Sbjct: 301 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYVELFAEENVKLVFEKEALYAI 360

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A    +     GAR L  ++E +L D+ F
Sbjct: 361 AKKAKQAKT-----GARALGMILENLLRDLMF 387


>gi|297792705|ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310072|gb|EFH40496.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 572

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R      Q+  A   D            
Sbjct: 153 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAVKPADDDMV 212

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 213 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 272

Query: 110 A 110
           A
Sbjct: 273 A 273



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 71/240 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 283 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 342

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+  A            
Sbjct: 343 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVESS 402

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +L ++    +LT+ ++ L  QYK++ +   + L FTE 
Sbjct: 403 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 462

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L++++E +L D  +      + SD+ E  VV+D E V
Sbjct: 463 ALRLIARKAITKNT-----GARGLRSLLESILMDSMYEIPDESTGSDMIE-AVVVDEEAV 516


>gi|325290595|ref|YP_004266776.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965996|gb|ADY56775.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQ+ AK+ +++A+ N ++R    + + D EL   NI+++GPTG GKT
Sbjct: 64  PVEIKAILDQYVIGQEQAKKVLSVAVYNHYKRISQSSKIDDVELQKSNIVMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++  LA++   PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 124 LLASTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAS 166



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235

Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADLL---- 313
           +T +ILFI  GAF                     + +              P DLL    
Sbjct: 236 DTTNILFIVGGAFDGIEKIIQNRTGKKTMGFGAEIQKKSEKNVGELLRQIMPGDLLKYGL 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L++L++     ILT+ ++ L+ QY++L++ +G+ L+FTED++ A+A+
Sbjct: 296 IPEFVGRIPVVVTLEALDQDALVRILTEPKNALVKQYEKLLEMDGVQLEFTEDALKAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  N+     GAR L+ ++E  + ++ +
Sbjct: 356 EAIRRNT-----GARGLRAIVEETMLNVMY 380


>gi|84494296|ref|ZP_00993415.1| ClpX [Janibacter sp. HTCC2649]
 gi|84383789|gb|EAP99669.1| ClpX [Janibacter sp. HTCC2649]
          Length = 424

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 8/109 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVGP 61
           P+EI   L +YIIGQ  AKR++A+A+ N ++R Q         AD  D +   NILL+GP
Sbjct: 65  PKEIFDFLQQYIIGQDVAKRSLAVAVYNHYKRIQSGEGVGKKDADHVD-IAKSNILLIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T ++LFI  GAF                                H   P DL+     P
Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRSGKKGLGFGSELHNPKDLAESIHEVMPEDLMKFGLIP 301

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   +  L+      ILT+  + L+ QY+++ + +G+ L+FT++++ A+A+ A
Sbjct: 302 EFIGRLPVITTVSPLDIPALTEILTEPRNALVKQYQKMFRIDGVELEFTDEAVVAIAEQA 361

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHI 423
               +     GAR L+ +ME VL  + F   SD +   VV+  E VR ++
Sbjct: 362 QARGT-----GARGLRAIMEEVLLPVMFDVPSDDEITKVVVTDEVVRKNV 406


>gi|254992851|ref|ZP_05275041.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J2-064]
          Length = 268

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 237 DTGNILFIVGGAF 249


>gi|225620157|ref|YP_002721414.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira hyodysenteriae WA1]
 gi|225214976|gb|ACN83710.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira hyodysenteriae WA1]
          Length = 614

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 3/100 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV++LD+ +IGQ +AK+A+A+       R     D+       NIL++GPTGVGK
Sbjct: 249 LTPKEIVAQLDKTVIGQDEAKKALAVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 305

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           T + + LA + G PF + +VT  TE GYVG +VE ++ +L
Sbjct: 306 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNL 345



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 58/224 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290
           +GIVFLDE DKI   D+        S + VQ  LL ++ G  +   ++G           
Sbjct: 358 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 417

Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311
            +NT +ILFI  GAF                                +    D       
Sbjct: 418 LMNTKNILFIFGGAFVGLDDIIKMRLKGESSLGFGSNAVINKLQKNRILSQVDVKDIEKY 477

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR P+ V L  L K + + ILT T  + I++Y E  K+ G  L  T ++I+ +
Sbjct: 478 GMIPEFIGRIPIIVTLNDLTKENLKDILTKTSESPIIKYTEFFKSIGKKLVVTAEAINFI 537

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            D A ++N     +GAR L++++E  + +I F+   ++  T+ +
Sbjct: 538 VDKASSMN-----MGARSLKSIVETAMVNILFNLDGVKGNTLTL 576


>gi|199598204|ref|ZP_03211626.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|229552142|ref|ZP_04440867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus LMS2-1]
 gi|258508347|ref|YP_003171098.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           rhamnosus GG]
 gi|258539556|ref|YP_003174055.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           rhamnosus Lc 705]
 gi|199590965|gb|EDY99049.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|229314444|gb|EEN80417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus LMS2-1]
 gi|257148274|emb|CAR87247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus GG]
 gi|257151232|emb|CAR90204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus Lc 705]
 gi|259649661|dbj|BAI41823.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           GG]
          Length = 416

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P EI+  L+ Y+IGQ  AK+A+++A+ N ++R  Q+    +D  EL   NI L+GPTG G
Sbjct: 64  PIEIMKSLNDYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 168



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 178 GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 237

Query: 292 NTDHILFIASGAF----HVSR-----------------------------PADLL----- 313
           +T +ILFI  GAF    ++ +                             P DL+     
Sbjct: 238 DTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTDSTNQVDPDKSLMQQIIPEDLMQFGII 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+ LN+SD   ILT+ ++ L+ QY++L+  +   L+FT +++ A+A  
Sbjct: 298 PEFIGRIPILAALEKLNESDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQ 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+     V D GAR L+++ME +++D  F
Sbjct: 358 AI-----VRDTGARGLRSIMEAIMQDTMF 381


>gi|51473872|ref|YP_067629.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str.
           Wilmington]
 gi|61211460|sp|Q68W45|CLPX_RICTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51460184|gb|AAU04147.1| ATP-dependent Clp protease ATP and substrate binding subunit ClpX
           [Rickettsia typhi str. Wilmington]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICKILNDYVVGQDKAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQK 175



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEKNNNEVLKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L+K     ILT  ++ ++ QY++  + +   L     +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLEELDKESLITILTKPKNAIVKQYQKQFELDDAELVIEYSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+     V   GAR L++++E +L D  +  ++L+++ V +  E V
Sbjct: 356 KAL-----VKKTGARGLRSILEHLLLDSMYKVAELKKQRVTLTKEVV 397


>gi|284929121|ref|YP_003421643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium
           UCYN-A]
 gi|284809580|gb|ADB95285.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium
           UCYN-A]
          Length = 434

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD---ELMPKNILLVGP 61
           P E+ + LD Y++GQ +AK+ +++A+ N ++R    Q+    + D   +L   NILL+GP
Sbjct: 84  PIEVKNYLDEYVVGQDEAKKVLSVAVYNHYKRLNFLQEKDKQVEDNIVDLQKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 144 TGSGKTLLAQTLAKILEVPFAIADATSLTEAGYVGEDVENILFKLLQVA 192



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++        VS EGVQ+ LL ++EG+  +VS   G          I
Sbjct: 202 GIIYIDEIDKIACKNENFSTTRDVSGEGVQQALLKILEGTIANVSPNGGRKHPHQNCIQI 261

Query: 292 NTDHILFIASGAF---------HVSRPA------------------------------DL 312
           NT  ILFI  GAF          +++ +                               +
Sbjct: 262 NTKDILFICGGAFISLDGIIDKRINKKSVGFVYSKDSYSDQGTIDLRQKVNSDDLIKFGM 321

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L +L +     ILT   + L+ QY++L+  + I L+FT+++I  +A+
Sbjct: 322 IPELIGRLPVIASLNTLTEETLATILTKPRNALVKQYQKLLSMDDIELEFTKEAIKEIAE 381

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A         +GAR L+ ++E ++ DI +
Sbjct: 382 EAYRRK-----VGARALRGIIEELMLDIMY 406


>gi|262037358|ref|ZP_06010823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           goodfellowii F0264]
 gi|261748615|gb|EEY35989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           goodfellowii F0264]
          Length = 409

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64
             P EI ++LD YIIGQ+ AK+ +++A+ N ++R +    ++ D EL   N+LLVGPTG 
Sbjct: 60  LKPAEIKAKLDDYIIGQETAKKVLSVAVYNHFKRIKHKMKNIDDVELQKSNVLLVGPTGS 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   P    + T  TE GYVG +VE ++  L+  A
Sbjct: 120 GKTLLAQTLAKILNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 165



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 56/222 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          
Sbjct: 174 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 233

Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313
           INT  ILFI  GAF                                     P DL+    
Sbjct: 234 INTKDILFIVGGAFEGLESKLKNRINEKRVGFGLENNGQKLDEMTLFENVLPEDLIKFGL 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR P+   L  L++     ILT+ +++L+ QYK+  + E I L F +D+I  +A 
Sbjct: 294 IPELIGRLPIITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMEDIKLSFEDDAIVEIAK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +A+        IGAR L++++E V+ D+ +    ++  T VI
Sbjct: 354 LALKRK-----IGARGLRSIIESVMLDLMYEIPSMENVTKVI 390


>gi|241668324|ref|ZP_04755902.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876857|ref|ZP_05249567.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842878|gb|EET21292.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R       D   EL   N+LL+GPTG GK
Sbjct: 59  PIEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESASITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTEKLMQKVESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++F+++++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSDEALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   +SD  EK ++ D
Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIIND 392


>gi|229821077|ref|YP_002882603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia
           cavernae DSM 12333]
 gi|259491252|sp|C5BXF8|CLPX_BEUC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229566990|gb|ACQ80841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia
           cavernae DSM 12333]
          Length = 424

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P+EI + L++YIIGQ  AK+++++A+ N ++R Q             E+   N+LL+GPT
Sbjct: 64  PKEIFAHLEQYIIGQDSAKKSLSVAVYNHYKRIQARESGTGLGEDGVEIAKSNVLLIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKIIEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF----------------------HVS---------RPADL-----LPE 315
           +T ++LFI +GAF                      H +         RP DL     +PE
Sbjct: 241 DTTNVLFIVAGAFAGLDDIIATRSRRRGVGFNAPLHDADEEDLFSQVRPEDLQKYGLIPE 300

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   +  L++     ILT+ ++ L+ QY+ + + +G+ L+FT+D+I+++AD A+
Sbjct: 301 FIGRLPVVATVTKLDQEALVRILTEPKNALVRQYQRMFEIDGVELEFTDDAIESVADQAL 360

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
            L  T    GAR L+ ++E VL  + F
Sbjct: 361 -LRGT----GARGLRAILEEVLMPVMF 382


>gi|229918353|ref|YP_002886999.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium
           sp. AT1b]
 gi|259491259|sp|C4L4J1|CLPX_EXISA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229469782|gb|ACQ71554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Exiguobacterium sp. AT1b]
          Length = 422

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ  AKRA+++A+ N ++R        D EL   NI+++GPTG GKT
Sbjct: 64  PQEIRNILDDYVIGQDRAKRALSVAVYNHYKRINAGGRSDDVELAKSNIVMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTMARVLNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313
           +T +ILFI  GAF      V R                            P DL     +
Sbjct: 236 DTTNILFIVGGAFAGIESVVKRRIGKKVIGFGNDQENRELTQEDLLARALPEDLQKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L +L++     ILT  ++ L+ QY+++++ + + L FT++++  +A +
Sbjct: 296 PEFIGRLPVMATLTTLDEEALVEILTKPKNALVRQYEKMLELDDVELTFTDEALIEIAKL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415
           A+   +     GAR L++++E ++ D+ F+  + D  EK ++ D
Sbjct: 356 AIKRKT-----GARGLRSIIEEMMLDVMFTVPSRDDIEKVIITD 394


>gi|152990291|ref|YP_001356013.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratiruptor sp.
           SB155-2]
 gi|151422152|dbj|BAF69656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitratiruptor
           sp. SB155-2]
          Length = 409

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS  ++S K G          I
Sbjct: 174 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNISAKGGRKHPNQEFVQI 233

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                +   P DL     +P
Sbjct: 234 DTSNILFICGGAFDGLTDIIKRRLGGNVLGFGQEKRSKRDESDLLNYVEPDDLVHYGLIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  L++ D   ILT+ ++ L+ QYK+L   + + L F +++++A+AD+A
Sbjct: 294 ELIGRLHMIATLNELSRDDMVRILTEPKNALVKQYKKLFALDEVELSFEKEALEAIADLA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +   +     GAR L+++ME ++ DI F   + +   VVI
Sbjct: 354 IKRKT-----GARGLRSIMEEIMVDIMFDLPEYKGYEVVI 388



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 4/121 (3%)

Query: 3   LTFNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILL 58
           LT ++  +P+E+ + LD+Y+IGQ+ AK+  ++A+ N ++R  +Q   D   E+   N+L 
Sbjct: 53  LTLDYLPTPKELKAILDQYVIGQEKAKKVFSVAVYNHYKRIFKQDMVDEDTEIAKSNVLF 112

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ +A++   P    + T  TE GYVG +VE I+  L   A   V+++ 
Sbjct: 113 IGPTGSGKTLMAQTMAKVLDVPLAIADATSLTEAGYVGEDVENILTRLYHAADEDVKKAE 172

Query: 119 R 119
           +
Sbjct: 173 K 173


>gi|147866723|emb|CAN80513.1| hypothetical protein VITISV_026067 [Vitis vinifera]
          Length = 469

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI   A  S  G  VS EGVQ+ LL ++EG+  +V  K G          I
Sbjct: 181 GIVYIDEVDKITKKAESSNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 240

Query: 292 NTDHILFIASGAF----------------HVSRPA------------------------- 310
           +T  ILFI  GAF                    P                          
Sbjct: 241 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 300

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++    + L FTE+
Sbjct: 301 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T ++DA  V
Sbjct: 361 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 409


>gi|34581315|ref|ZP_00142795.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           sibirica 246]
 gi|28262700|gb|EAA26204.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           sibirica 246]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R + L +   D EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYLQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFTANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  +     LD  E  ID  A 
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|331695809|ref|YP_004332048.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950498|gb|AEA24195.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
           dioxanivorans CB1190]
          Length = 426

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   LD+Y++GQ   KR +++A+ N ++R Q     R       EL   NIL++GPT
Sbjct: 64  PAEIHDFLDQYVVGQSATKRTLSVAVYNHYKRIQAGDKSRGSDGDGVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI +GAF          V R                         P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGDRVGRRGLGFGAEIRSKTDLESSESFADTMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + SL+K     ILT+  + L+ QY++L + +G+ L+FT+D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTSLDKEALVKILTEPRNALVKQYRKLFEMDGVELEFTDDALEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ +ME VL  + +
Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385


>gi|167746333|ref|ZP_02418460.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|317470743|ref|ZP_07930128.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167654326|gb|EDR98455.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|316901878|gb|EFV23807.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 433

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 65/102 (63%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD Y+IGQ +AK+ +++A+ N ++R  L      +L   NI+++GPTG GKT 
Sbjct: 67  PKEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRILLGDSSDIDLQKSNIIMLGPTGSGKTL 126

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA++   PF   + T  TE GYVG +VE I+  ++  A
Sbjct: 127 LAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 168



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAFH------VSR----------------------------PAD-----L 312
           +T +ILFI  GAF        SR                            P D     L
Sbjct: 238 DTTNILFICGGAFDGLEKIIESRIGQKSIGFNAEIGNGQKEDIGSLLQQVLPEDFVKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV V L  L++     IL + +S L+ QY++L + +G+ L+F + +++A+A+
Sbjct: 298 IPEFIGRVPVNVSLNPLDREALVRILKEPKSALVKQYQKLFELDGVDLEFEDGALEAIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ +ME V+ D+ +
Sbjct: 358 KAMERKT-----GARGLRAIMEGVIMDLMY 382


>gi|254415781|ref|ZP_05029539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177487|gb|EDX72493.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
          Length = 446

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59
           PRE+ + LD ++IGQ DAK+ +++A+ N ++R          +  +D   EL   NILL+
Sbjct: 82  PRELKNYLDEHVIGQDDAKKVLSVAVYNHYKRLSFLEAKAKGKAGSDDPVELQKSNILLL 141

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 142 GPTGCGKTLLAQTLAAVLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                             R ADLL            
Sbjct: 262 DTGNILFICGGAFVGLEKVIEQRFGKRSIGFIQPGEGQSKEKRAADLLRHLEPDDLVKFG 321

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   +  L++     ILT   + L+ QY++L+K + + L FTEDS+ A+A
Sbjct: 322 MIPEFIGRIPIAAVVDPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLGFTEDSLRAIA 381

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ ++ +
Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLEVMY 407


>gi|325955074|ref|YP_004238734.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922]
 gi|323437692|gb|ADX68156.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922]
          Length = 387

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPREI + LD Y+IGQ  AK+ +++A+ N ++R    + + D E+   N++LVG TG GK
Sbjct: 59  SPREIKNFLDEYVIGQDQAKKILSVAVYNHYKRVLNESSVGDVEIDKSNVILVGETGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A+L   PF  V+ T  TE GYVG +VE I+  L+  A
Sbjct: 119 TLLAKTIAKLLNVPFAIVDATVLTEAGYVGEDVESILSRLLQAA 162



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 54/218 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ +L ++EG+ V+            K+  +
Sbjct: 172 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKILEGTVVNVPPKGGRKHPDQKFVEV 231

Query: 292 NTDHILFIASGAF-----HVS-------------------------------RPADLLPE 315
           NT  ILFIA GAF     H++                               +   ++PE
Sbjct: 232 NTKDILFIAGGAFSGIERHIANRLNKHVIGFKKDETKKETEHLLEEVNATDLKNFGIIPE 291

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           + GR P+   L+ L++   + ILT+ ++ LI QY++L + +G  L  TE+++D +   A 
Sbjct: 292 LIGRLPIITFLQPLDQEAMKRILTEPKNALIKQYEKLFELDGKELVVTENTLDYIVKRAD 351

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            L      +GAR L++V E +  DI +   +  +K +V
Sbjct: 352 ELG-----LGARGLRSVTEEIFTDIMYDIVNQPDKVLV 384


>gi|110638107|ref|YP_678316.1| ATP-dependent protease ATP-binding subunit ClpX [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280788|gb|ABG58974.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 411

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K  +I
Sbjct: 174 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQKMIAI 233

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT++ILFI  GAF                                  +V+    +   L+
Sbjct: 234 NTENILFICGGAFDGIARIIANRLNTQPIGFKTKDDEDDIDAENLLQYVTALDLKTFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR P+  +L  LN+     ILT  ++ ++ QYK+L   EGI L F  +++  + + 
Sbjct: 294 PELIGRLPLVSYLDPLNEEMLLEILTQPKNAIVKQYKKLFDMEGISLTFEPEALQFIVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
           A+        +GAR L+++ E ++ D  F   + ++++ + VI+ EY +
Sbjct: 354 AMAFK-----LGARGLRSICEAIMTDAMFDLPSEEIKQASFVINYEYAK 397



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVG 60
           FN   P ++ S LD+Y+IGQ +AK+ +++A+ N ++R    ++  D   ++   NI++VG
Sbjct: 55  FNLIKPAKMKSHLDQYVIGQDEAKKVMSVAVYNHYKRLMQSKINEDDDVQIEKSNIIMVG 114

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            TG GKT ++R LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 115 ETGTGKTYLARTLAKILQVPFCIADATVLTEAGYVGEDVESILTRLLQAA 164


>gi|18423503|ref|NP_568792.1| CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding / protein binding [Arabidopsis thaliana]
 gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease regulatory subunit CLPX [Arabidopsis
           thaliana]
 gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           [Arabidopsis thaliana]
 gi|23296603|gb|AAN13130.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           [Arabidopsis thaliana]
 gi|332008960|gb|AED96343.1| CLP protease regulatory subunit X [Arabidopsis thaliana]
          Length = 579

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R      Q+  A   D            
Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279

Query: 110 A 110
           A
Sbjct: 280 A 280



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 71/240 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 290 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 349

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+  A            
Sbjct: 350 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVESS 409

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +L ++    +LT+ ++ L  QYK++ +   + L FTE 
Sbjct: 410 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 469

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L+ ++E +L D  +      + SD+ E  VV+D E V
Sbjct: 470 ALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEGTGSDMIE-AVVVDEEAV 523


>gi|242062022|ref|XP_002452300.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
 gi|241932131|gb|EES05276.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
          Length = 640

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP----ADLRD----------- 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R   Q L     ADL             
Sbjct: 230 TPKEICKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGGFDGEADDDDNV 289

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 290 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 349

Query: 110 A 110
           A
Sbjct: 350 A 350



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 65/249 (26%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284
           L  + TV   ++Q  +  G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V
Sbjct: 343 LYKLLTVADFNVQAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 401

Query: 285 ST-KYGS----------INTDHILFIASGAF----------------------------- 304
           +  + G+          I+T  ILFI  GAF                             
Sbjct: 402 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 461

Query: 305 ------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                             DL     +PE  GRFP+ V L +LN+     +LT+ ++ L  
Sbjct: 462 GISSAQVTSSLLESVESGDLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLTEPKNALGK 521

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           Q+K+L     + L FT+ ++  +A  A++ N+     GAR L+T++E +L D  +   D 
Sbjct: 522 QFKKLFSMNNVKLHFTDGALRIIAKKAMSKNT-----GARGLRTILETILMDSMYEIPDA 576

Query: 408 QEKTVVIDA 416
           +     IDA
Sbjct: 577 RSGEKRIDA 585


>gi|157964842|ref|YP_001499666.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           massiliae MTU5]
 gi|167009019|sp|A8F2I3|CLPX_RICM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157844618|gb|ABV85119.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           massiliae MTU5]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+      ILT  ++ ++ QY++  + +   L   + +++A+A+
Sbjct: 296 IPEFIGRLPIVTTLDELDNEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALEAIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +  ++L+++ V+I  E V
Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVIITQEVV 397


>gi|15620529|gb|AAL03913.1|U30252_1 ClpX [Synechococcus elongatus PCC 7942]
 gi|2351824|gb|AAB68678.1| ATP-dependent Clp protease, regulatory subunit [Synechococcus
           elongatus PCC 7942]
          Length = 450

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 6/117 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGPT 62
           P +I   LD ++IGQ +AK+ +++A+ N ++R       +  A    E+   NILL+GPT
Sbjct: 89  PHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEFEAGETIEIQKSNILLIGPT 148

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+ VA   + E++R
Sbjct: 149 GCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQR 205



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 60/221 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 206 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 265

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T +ILFI  GAF                                    H+  P DL   
Sbjct: 266 DTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME-PEDLVQF 324

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   L  L+++    ILT+    L+ QY++LM  + + L+F +D+I+A+
Sbjct: 325 GLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAI 384

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           A  A    +     GAR L+ ++E ++ ++ +     Q+ T
Sbjct: 385 AREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVT 420


>gi|153871193|ref|ZP_02000427.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
 gi|152072342|gb|EDN69574.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
          Length = 186

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 10/121 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+EI   L+ Y+IGQ  AK+ +++A+ N ++R    +Q   D+  E+   N+LL+GPTG
Sbjct: 69  TPQEINLHLNDYVIGQDYAKKVLSVAVYNHYKRLDSNRQSENDV--EISKSNVLLIGPTG 126

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++  LAR    PF   + T  TE GYVG +VE I+++   + I +    R+  +R
Sbjct: 127 CGKTLLAETLARFLEVPFAMADATTLTEAGYVGEDVEHILQNYYKIVIMM----RKRPIR 182

Query: 124 E 124
           E
Sbjct: 183 E 183


>gi|2674203|gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis thaliana]
          Length = 579

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R      Q+  A   D            
Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279

Query: 110 A 110
           A
Sbjct: 280 A 280



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 71/240 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 290 GIVYIDEVDKITKKAESLYISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 349

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+  A            
Sbjct: 350 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTTAAVASNLMETVETS 409

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +L ++    +LT+ ++ L  QYK++ +   + L FTE 
Sbjct: 410 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 469

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L+ ++E +L D  +      + SD+ E  VV+D E V
Sbjct: 470 ALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEGTGSDMIE-AVVVDEEAV 523


>gi|295093765|emb|CBK82856.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Coprococcus sp. ART55/1]
          Length = 495

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 21/157 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  L   + D E+   N+L+VGPTG GK
Sbjct: 135 APHKIKAMLDEYVVGQEYAKKVISVAVYNHYKRV-LTDSMDDIEIEKSNMLMVGPTGCGK 193

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T I + +ARL   P    + T  TE GY+G +VE ++  L+  A N V ++ R     DE
Sbjct: 194 TYIVKTIARLLKVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERGIVFIDE 253

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           + +              + K   SN+R+V  + ++ G
Sbjct: 254 IDK--------------IAKKQNSNSRDVSGESVQQG 276



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GIVF+DE DKI  + + N   VS E VQ+ LL L+EG+ V    GS           INT
Sbjct: 247 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINT 306

Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314
            +ILFI  GAF          +SR A                               ++P
Sbjct: 307 RNILFICGGAFPDIEEIIKQRISRQASMGFKAELKDKYDDDPNLLRQVTTEDLREFGMIP 366

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L +L+K+ +  IL + ++ ++ QYK+L+  + + L F + + +A+A+ A
Sbjct: 367 EFLGRLPVLFTLDALDKNMYVSILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIAEEA 426

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L+ ++E+ + DI +
Sbjct: 427 IKRKT-----GARALRAIIEKFMLDIMY 449


>gi|325186763|emb|CCA21310.1| ATPdependent Clp protease ATPbinding subunit clpX putative [Albugo
           laibachii Nc14]
          Length = 556

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 60/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +++   I   VS EGVQ+ LL ++EG+  ++  K G         +I
Sbjct: 300 GIVYIDEIDKISRKNATTNIARDVSGEGVQQALLKMLEGNLVNIPEKGGRKNPRDDCVTI 359

Query: 292 NTDHILFIASGAF---------------------------HVSR----------PADLL- 313
           +T +ILFI  GAF                           H+ +          P DL+ 
Sbjct: 360 DTSNILFICGGAFAGLEKTIAARTCRSSIGFGAIMPNTDLHMQKEAAACMENVEPEDLIA 419

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR PV V  + L K +   IL++ +++++ Q+K L   +G+    T+ +++A
Sbjct: 420 FGLIPEFIGRLPVIVSTRGLQKQEMVRILSEPKNSIVRQFKALFALQGVEFVVTKGALEA 479

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           +A++A+  N+     GAR L++++ER L D+ F   DL
Sbjct: 480 VAEIALEKNT-----GARGLRSILERTLVDVMFDLPDL 512



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 68/196 (34%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIA---------------------------LRNRWR 39
            +PR +   LD Y+IGQ+  K+ +++A                           L++R  
Sbjct: 124 LTPRMMCQGLDDYVIGQESVKKVLSVAVHNHYKRLHLLDLMRAQKEAAVAKATMLKSRIE 183

Query: 40  RQQLPADLRD------------------------------------ELMPKNILLVGPTG 63
              LP  L D                                    EL   N+LL+GPTG
Sbjct: 184 LNDLPEGLSDMSRRLLLEQVLSGLNEKSWSESGVTVTENLKILEDVELDKTNVLLLGPTG 243

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LARL   P +  + T  T+ GYVG +VE ++  L   +   +  ++R    
Sbjct: 244 SGKTLLAKTLARLVKVPIVIADATCLTQAGYVGEDVESVLFKLYQASGYNIEATQRGIVY 303

Query: 120 -DEVREQASINAEERI 134
            DE+ + +  NA   I
Sbjct: 304 IDEIDKISRKNATTNI 319


>gi|295090911|emb|CBK77018.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Clostridium cf. saccharolyticum K10]
          Length = 499

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  + +     VS E VQ++LL L+EGS V    GS           ++T
Sbjct: 267 GIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVDT 326

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
           ++ILFI  GAF                                   H +    R   ++P
Sbjct: 327 NNILFICGGAFPDLENIVKERLNKSSTMGFGAQLKGKYDDDPNLLGHATTEDLRKFGMIP 386

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ V L++L K     ILT+ ++ ++ QY++L+  + + L F ED++  +A+ A
Sbjct: 387 EFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLVFEEDALSWIAEEA 446

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           +       + GAR L+ ++E  ++DI +    D    +VVI   Y+  + G
Sbjct: 447 IR-----KETGARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLEKNGG 492



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD------ELMPKNILLVG 60
           +P  I S+LD+Y++GQ+ AK+ +A+A+ N ++R     A+  D      ++   NIL++G
Sbjct: 148 APHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIG 207

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  + +
Sbjct: 208 PTGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAEK 266


>gi|314919375|gb|EFS83206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA1]
          Length = 429

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD  +IGQ++AKR +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDASVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|310643605|ref|YP_003948363.1| ATP-dependent clp protease ATP-binding subunit clpx [Paenibacillus
           polymyxa SC2]
 gi|309248555|gb|ADO58122.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
          Length = 418

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NIL++GPTG GKT
Sbjct: 64  PMQIREILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                  +  P DLL     
Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     IL++ ++ L  QY+++++ + + L+F +D+++A+A  
Sbjct: 296 PEFVGRLPVISTLEPLDEKTLVRILSEPKNALTKQYQKMLELDNVQLEFKQDALEAIARE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A+  N+     GAR L+ ++E ++ D+ +      +  T VI+ + V+
Sbjct: 356 AIKRNT-----GARGLRAIIEGIMLDVMYEVPSRDDVTTCVINEQVVK 398


>gi|115314707|ref|YP_763430.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica OSU18]
 gi|115129606|gb|ABI82793.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKRSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  T+ GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTKAGYVGDDVENIIVRLLQNA 162



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392


>gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPK 54
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R              + P     EL   
Sbjct: 61  TPAEIKAFLDDYVIGQDQAKKVLAVAVYNHYKRIYQKKPNSRPRPGVKGPTGEEVELSKS 120

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 176



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI  +  G+    +R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 186 GIVYIDEIDKIARK--GDMPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 243

Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313
            ++T +ILFI  GAFH                                  ++ P DL+  
Sbjct: 244 QVDTTNILFICGGAFHGIDGVIKRRVGEKGLGFGAKITHREERSVGELLALTEPEDLMRF 303

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L + D  +IL+  ++ L+ QY++L + E + L FT++++ A+
Sbjct: 304 GMIPEFIGRLPMIATLNDLKEEDLVIILSQPKNALVKQYQKLFEFEKVKLTFTKEALRAI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A  A+  +S     GAR L+ ++E  + +I +
Sbjct: 364 AREAMRRHS-----GARGLRAILEDAMLEIMY 390


>gi|313673003|ref|YP_004051114.1| ATP-dependent clp protease ATP-binding subunit clpx
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939759|gb|ADR18951.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 414

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 68/112 (60%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I   LD+Y+IGQ DAK+ +++A+ N ++R    +    E+   NILL+G TG GKT
Sbjct: 61  TPDKIKEVLDQYVIGQDDAKKTLSVAVYNHYKRIFYKSKDDIEIEKSNILLIGATGTGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            ++R LA+    PF   + T  TE GYVG +VE II  L+  A   V +++R
Sbjct: 121 LLARTLAKTLNVPFAISDATTLTEAGYVGEDVEHIILRLLQAADFDVEKAQR 172



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 59/219 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVFLDE DKI  +     I   VS EGVQ+ LL +VEG+  +            ++  +
Sbjct: 173 GIVFLDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPNQEFIQV 232

Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313
           +T +ILFI  GAF                                       +P DL+  
Sbjct: 233 DTTNILFICGGAFEGLTEIIKQRIGKKSLGFKSNEDRKSVNEMSKSDILKFVQPDDLIKY 292

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE+ GR PV   L  L++     IL + +++++ QYKEL + + + L FT+ ++ ++
Sbjct: 293 GLIPELVGRLPVVAVLDDLDEDALVKILVEPKNSIVKQYKELFRMDNVELTFTDGALRSI 352

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
              A+   +     GAR L+ ++E ++ DI F    +++
Sbjct: 353 VKKAIERKT-----GARGLRAIIEEIMTDIMFKIPSMKD 386


>gi|295397568|ref|ZP_06807647.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974192|gb|EFG49940.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans
           ATCC 11563]
          Length = 418

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           P EI S LD Y+IGQ  AK+ +++A+ N ++R     +  D+   L   NILL+GPTG G
Sbjct: 65  PTEIRSILDDYVIGQDQAKKTLSVAVYNHYKRISSNNETNDDGVSLQKSNILLMGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 KTYLAQTLARILDVPFAIADATTLTEAGYVGEDVENILVKLMQSA 169



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  + G          +
Sbjct: 179 GIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTEANIPPQGGRKHPHQELIQV 238

Query: 292 NTDHILFIASGAF------------------------HV----------SRPADL----- 312
           +T +ILFI  GAF                        H+          + P DL     
Sbjct: 239 DTTNILFIVGGAFDGIEPIIKERLGEKVIGFGNSSNNHILNDNDAIMQQAIPQDLQTFGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+  +L  L K D   ILT  ++ L+ QY++L+K + + L FT+++++A+A 
Sbjct: 299 IPEFIGRLPIMANLNKLTKDDLVHILTQPKNALVKQYQQLLKMDNVELIFTDEALEAIAQ 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A++  +     GAR L++++E  + +I F     ++ + V+  E V
Sbjct: 359 KALDRKT-----GARGLRSIIEEAMLEIMFEIPSREDVSKVMITESV 400


>gi|308070424|ref|YP_003872029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa E681]
 gi|305859703|gb|ADM71491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa E681]
          Length = 418

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NIL++GPTG GKT
Sbjct: 64  PMQIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                  +  P DLL     
Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ + + L+F +D+++A+A  
Sbjct: 296 PEFVGRLPVISTLEPLDENTLVRILSEPKNALTKQYQKLLELDNVQLEFKQDALEAIARE 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A+  N+     GAR L+ ++E ++ D+ +     ++  T VI+ + V+
Sbjct: 356 AIKRNT-----GARGLRAIIEGIMLDVMYEVPSREDVTTCVINEQVVK 398


>gi|46579747|ref|YP_010555.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602777|ref|YP_967177.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|61211537|sp|Q72CE7|CLPX_DESVH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214774|sp|A1VE84|CLPX_DESVV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46449162|gb|AAS95814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563006|gb|ABM28750.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|311233537|gb|ADP86391.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris RCH1]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 6/108 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62
            +P EI + LD Y+IGQ  AK+ +++A+ N ++R    + L  ++  EL   NILL+GP+
Sbjct: 62  LTPAEIKARLDEYVIGQHQAKKILSVAVHNHYKRVFYAEALGGEV--ELEKSNILLIGPS 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 GSGKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 177 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236

Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312
           +T +ILFI  GAF                     VS               P DL     
Sbjct: 237 DTSNILFILGGAFIGLDKIVDQRSGGGSMGFGAKVSNRKDRPLGELLDQVHPNDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV  H+  L + D   ILT+ ++ L+ QY++L + + + L FT +++ ++A 
Sbjct: 297 IPEFIGRIPVVTHVDELGEEDLIRILTEPKNALVRQYQKLFELDKVTLRFTANALKSIAS 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+ VME V+ DI +S   L+
Sbjct: 357 QAIERKT-----GARGLRNVMENVMLDIMYSLPTLE 387


>gi|303232787|ref|ZP_07319472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae PB189-T1-4]
 gi|302481273|gb|EFL44348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae PB189-T1-4]
          Length = 558

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 58/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG++ S       K+ S     I
Sbjct: 321 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHI 380

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           NT++ILFI  GAF          + +                         P DL     
Sbjct: 381 NTENILFICGGAFVGLDKIVADRIGKQGIGFTGELVRKVDDAQDELLAQVMPQDLHKFGM 440

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV    K L   D   ILT  ++ +I QYK +   EG+ L+F +D+++ +A 
Sbjct: 441 IPEFVGRIPVITSTKELTARDLVSILTTPKNAIIKQYKRIFDIEGVELEFEDDALEEIAK 500

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414
           +A+  N+     GAR L+ + E+ LE++ F   SDL    V+I
Sbjct: 501 LALERNT-----GARGLRAMCEKTLENVMFDIPSDLSIVKVII 538



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L++ 
Sbjct: 251 ELAKSNILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLINA 310

Query: 110 A 110
           A
Sbjct: 311 A 311



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
           +P EI  EL +Y++GQ+ AKRA+++A+ N +RR
Sbjct: 146 TPHEIYDELSQYVMGQEQAKRALSVAVYNHYRR 178


>gi|218885219|ref|YP_002434540.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756173|gb|ACL07072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 512

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
            +P EI ++LD Y+IGQ  AK+ +++A+ N ++R    + L  E  L   NILL+GP+G 
Sbjct: 62  LTPAEIKAKLDEYVIGQHQAKKILSVAVHNHYKRVFFASALGGEVELEKSNILLIGPSGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 GKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 177 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                      P DL     
Sbjct: 237 DTSNILFILGGAFIGLDKLIGQRIGGGAMGFGAKVATRKDLPFGELLGQVHPNDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV  H++ L++ D   ILT+ ++ L+ QY++L + + + L FT +++ ++A 
Sbjct: 297 IPEFVGRIPVVTHVEELSEDDLVRILTEPKNALVRQYQKLFELDKVNLRFTANALKSIAS 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            A+   +     GAR L+ VME V+ DI +     Q+ K  VI+
Sbjct: 357 QAIERKT-----GARGLRNVMESVMLDIMYKLPSQQDIKECVIN 395


>gi|308271900|emb|CBX28508.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
           Desulfobacterium sp.]
          Length = 414

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 5/114 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P++I   LD Y+I Q  AK+ +++A+ N ++R  L +D+     EL   NILL+GPTG G
Sbjct: 63  PKQIKEMLDDYVIEQDYAKKILSVAVYNHYKR--LNSDISAGNVELQKSNILLIGPTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V + +R
Sbjct: 121 KTLMAQTLARFLNVPFTIADATSLTEAGYVGEDVENIILSLLQNADYDVEKCKR 174



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI A+     I   VS EGVQ+ LL ++EG++ S             +  +
Sbjct: 175 GIVYIDEIDKIAAKSENPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQDFVKV 234

Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313
           +T +ILFI  G F+                                  + +P DL+    
Sbjct: 235 DTMNILFICGGTFNGLDQIIQKRFGSKSMGFGAKISGKENKSKSELLKLVQPEDLIKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++     ILT+ ++ LI Q+K+L + EGI L FT+ ++ A+A 
Sbjct: 295 IPEFLGRLPVVASLDELSEETLIRILTEPKNALINQFKKLFEMEGINLRFTDSALSAIAK 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A    S     GAR L+ V+E  L DI +
Sbjct: 355 EAQKRKS-----GARGLRAVLESCLLDIMY 379


>gi|160939984|ref|ZP_02087330.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437128|gb|EDP14894.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 12/124 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDE---------LMPKN 55
           +P  I +ELD Y+IGQ+ AK+ +A+A+ N ++R    Q P D   E         +   N
Sbjct: 121 APHVIKAELDEYVIGQEKAKKVMAVAVYNHYKRAFLDQPPQDGAGEDAGTDKNIVIEKSN 180

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           IL++GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V 
Sbjct: 181 ILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVE 240

Query: 116 ESRR 119
            ++R
Sbjct: 241 RAQR 244



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  +   N   VS E VQ++LL L+EGS+V    GS           +NT
Sbjct: 245 GIIFIDEIDKIAKKKQTNARDVSGESVQQELLKLLEGSTVEVPVGSNQKNAMTPMATVNT 304

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
           D+ILFI  GAF                                    V+    R   ++P
Sbjct: 305 DNILFICGGAFPDLEEIIKERLMKKITMGFGSILKDTYDKDPDILGQVTNEDLRTFGMIP 364

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV V L+ L +     IL + ++ +  QY+ L++ + + L F ++++  +A  A
Sbjct: 365 EFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQYERLLEMDEVRLVFEDEALKWIAGEA 424

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E  + DI +    D    +VV+   Y+
Sbjct: 425 IKRGT-----GARALRAILEEFMLDIMYEIPKDPNIGSVVVTRPYL 465


>gi|126668932|ref|ZP_01739873.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
 gi|126626595|gb|EAZ97251.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
          Length = 427

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRETLNEYVIGQDRAKVVLAVAVYNHYKRLRYGEGKADVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH------VSRPA----------------------------------D 311
           NT +ILFI  GAF         R A                                   
Sbjct: 242 NTSNILFICGGAFAGLEKVIQQRSARSSIGFSAEVASKDNIKSAGEIIKDVQTEDLVKFG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     ILT+ ++ L  QY++L + EG+ LDF E+++ A+A
Sbjct: 302 LIPEFVGRLPVVATLTELDEDALIQILTEPKNALTKQYQKLFEMEGVELDFREEALRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             A   N+     GAR L+++ME  L D  +     Q+   V+  E V
Sbjct: 362 RKAKERNT-----GARGLRSIMEATLLDTMYQIPSEQDVCKVVVDESV 404


>gi|294790931|ref|ZP_06756089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia
           inopinata F0304]
 gi|294458828|gb|EFG27181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia
           inopinata F0304]
          Length = 426

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 17/130 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----------------ADLRDE 50
            +P  I S LDRY++GQ+ AK A+A+A+ N ++R  +                 +DL   
Sbjct: 63  MTPARISSYLDRYVVGQKKAKHALAVAVYNHYKRINMELEDSAEKLKRSLSAEHSDLDQV 122

Query: 51  LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++ K N+LL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I++ L+  
Sbjct: 123 VVAKSNVLLLGPTGTGKTYLAQTLASIMDVPFTIADATTLTEAGYVGDDVETILQRLIQA 182

Query: 110 AINIVRESRR 119
           A   + +++R
Sbjct: 183 ADGNINQAQR 192



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 61/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEG--SSVSTKYGS-------- 290
           GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG  S+V  K G+        
Sbjct: 193 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVSTVPVK-GTRKHEDQEI 250

Query: 291 --INTDHILFIASGAF---------------------------------HVSRPADL--- 312
             INT  ILFI  GAF                                  +  P DL   
Sbjct: 251 VRINTKDILFICGGAFVGLEDIIRRRLGKRETGFGTDWSLQDTSDEDILTLVTPDDLAEY 310

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             LPE  GR PV   L  L   D   ILT   + L  Q++++   + + L FT++++ ++
Sbjct: 311 GLLPEFIGRMPVVSTLSPLTVDDLVSILTTPVNALTKQFQKMFAVDQVDLSFTDEALRSI 370

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           A  +++  +     GAR L+++ME +L++  F   D
Sbjct: 371 AKKSLSRGT-----GARGLRSIMENLLQETMFRIPD 401


>gi|260549097|ref|ZP_05823318.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
 gi|260407825|gb|EEX01297.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
          Length = 437

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGV 64
           P EI + L++Y+IGQ  AK+ +++A+ N ++R ++       +D E+   NILL+GPTG 
Sbjct: 63  PHEIRAALNQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 101/372 (27%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151
           I  + VDV +++V+ S++ E  + AS  +     I  AL    +G+     T  V     
Sbjct: 32  ICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALNQYVIGQDLAKKTLSVAVYNH 91

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            K+L+ G+      D+E+A      SN  + G    G   L++  ++++           
Sbjct: 92  YKRLKVGQSGHVSKDVEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258
                P  M D +  L +   V  D   +V+               GI+++DE DKI  +
Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191

Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAF- 304
                I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF 
Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFA 251

Query: 305 ----------------------------------HVSRPADL-----LPEIQGRFPVRVH 325
                                                 P DL     +PE  GR PV   
Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPVIAT 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A  A+  N+     G
Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNT-----G 366

Query: 386 ARRLQTVMERVL 397
           AR L++++E VL
Sbjct: 367 ARGLRSILENVL 378


>gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo
           subsp. melo]
          Length = 571

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 18/126 (14%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLP--------ADLR 48
           L  NF +P+EI   LD+++IGQ  AK+ +++ + N ++R      Q P        AD  
Sbjct: 151 LGPNFPTPKEIAKGLDKFVIGQDRAKKVLSVGVYNHYKRIYHESLQRPTGDAFNNKADAA 210

Query: 49  D----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           D    EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+ 
Sbjct: 211 DDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 270

Query: 105 DLVDVA 110
            L+ VA
Sbjct: 271 KLLMVA 276



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 286 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQI 345

Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311
           +T  ILFI  GA                  F     A+                      
Sbjct: 346 DTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESS 405

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +L ++    +LT+ ++ L  QY+++ +   + L FTE+
Sbjct: 406 DLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTEN 465

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A++ N+     GAR L++++E +L D  +   D++    +IDA
Sbjct: 466 ALRLIARKAMSKNT-----GARGLRSILENLLMDSMYEIPDIRTGKDIIDA 511


>gi|262201988|ref|YP_003273196.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gordonia
           bronchialis DSM 43247]
 gi|262085335|gb|ACY21303.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gordonia
           bronchialis DSM 43247]
          Length = 426

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 8/109 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q   + +D       EL   NIL++GP
Sbjct: 64  PAEIRDFLENYVIGQDTAKRTLAVAVYNHYKRIQA-GEKKDSRTGETVELAKSNILMLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 69/247 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRIGKRGIGFGNDVATKDEVDTSDHFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     IL++ ++ L+ QY  L   + + L+FT D+++A+AD
Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVSILSEPKNALVKQYTRLFDMDNVELEFTTDALEAIAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI------ 423
            A++  +     GAR L+ +ME VL  + +   S  D+++  VV+  E VR ++      
Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVTGETVRDNVLPTIVP 413

Query: 424 -GDFPSE 429
             D PSE
Sbjct: 414 RKDSPSE 420


>gi|326386906|ref|ZP_08208520.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208586|gb|EGD59389.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 417

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I   L+ Y+IGQ  AKR +++A+ N ++R +      + EL   NILLVGPTG GK
Sbjct: 66  TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGEVELSKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 57/217 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
            +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++ 
Sbjct: 177 QHGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236

Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313
            ++T +ILFI  GAF                    HV+               P DLL  
Sbjct: 237 QVDTTNILFICGGAFAGLERIIADRLQKRSIGFGAHVADPDKRRVGELLQKAEPEDLLKF 296

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L+      IL + ++ L+ QY++L + E + L FTE++++A+
Sbjct: 297 GLIPEFVGRLPVIATLNDLDIDALVRILREPKNALVKQYQKLFELEDVQLTFTEEALEAI 356

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           A  A+   +     GAR L++++E +L D  F    L
Sbjct: 357 AKKAIERKT-----GARGLRSIVEGLLLDTMFDLPTL 388


>gi|116333989|ref|YP_795516.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           ATCC 367]
 gi|122269327|sp|Q03QN7|CLPX_LACBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116099336|gb|ABJ64485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           brevis ATCC 367]
          Length = 418

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 4/107 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P +IV  L++Y+IGQ +AKR +++A+ N ++R    A   D    EL   NI ++GPTG
Sbjct: 63  TPADIVKTLNQYVIGQTEAKRTLSVAVYNHYKRVNEMAQETDDDGPELQKSNIAVIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 SGKTYLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 65/235 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 179 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 238

Query: 292 NTDHILFIASGAF-------------------------HVSRPAD--------------- 311
           +T +ILFI  GAF                         HV    D               
Sbjct: 239 DTTNILFIVGGAFDGIEGIVKRRLGDQTIGFGADSQEQHVLSSGDSLMQHVIPEDLLEFG 298

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L+ L+++D   ILT+ ++ L+ QY++L+  + + L F   ++  +A
Sbjct: 299 LIPEFIGRLPILTALEKLDENDLVRILTEPKNALVKQYEKLLALDNVDLQFQPAALREMA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVRLH 422
            +A+  N+     GAR L++++E V+ DI F   DL  +T    VVI  E V  H
Sbjct: 359 KLAIARNT-----GARGLRSIIEDVMRDIMF---DLPSRTDVAKVVITPETVTEH 405


>gi|94986251|ref|YP_605615.1| ATP-dependent protease ATP-binding subunit [Deinococcus
           geothermalis DSM 11300]
 gi|167009012|sp|Q1IWD8|CLPX_DEIGD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94556532|gb|ABF46446.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus
           geothermalis DSM 11300]
          Length = 406

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+EI + LD ++IGQ +AK+A+A+A+ + ++R   P D+   L   NILL+GPTG GKT
Sbjct: 65  SPKEIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP-DVN--LQKSNILLIGPTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 122 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 164



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 52/222 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+   V  + G          +
Sbjct: 174 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 233

Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317
           NT +ILFI  GAF     ++R                         P DL     +PE  
Sbjct: 234 NTKNILFIVGGAFENMAEIARARTNVRSVGFGAEHKGEEKEELRFLPEDLVKFGLIPEFV 293

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L+ L++     ILT+ +  ++ QY+ L   +G+ L FTE+++  +A  A   
Sbjct: 294 GRLPLVVQLQDLDEDALVRILTEPQGAIVKQYQALFGFQGVDLTFTEEALREVAHRAKAR 353

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +     GAR L+ V+E+ + D+ F       K +  DAE +
Sbjct: 354 KT-----GARGLRAVLEKAMTDLLFELPIEGLKELRFDAENI 390


>gi|300934278|ref|ZP_07149534.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           resistens DSM 45100]
          Length = 424

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60
           P EI   LD Y+IGQ +AKR +A+A+ N ++R ++         +D   EL   NIL++G
Sbjct: 62  PSEIAKFLDTYVIGQDEAKRTLAVAVYNHYKRIKVEEANAGARRSDDEVELSKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 122 PTGSGKTYLAQSLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 59/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G           
Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQF 240

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T ++LFI +GAF                                     P DL     +
Sbjct: 241 DTKNVLFIVAGAFAGLEKVISERRGKKGLGFGAEISGKKDEEPNPFQFVEPEDLVKFGLI 300

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L + +G+ L FT++++  +A  
Sbjct: 301 PELIGRLPVVTHVGHLDEDALVRVLTEPKNSLVRQYQRLFEMDGVRLSFTDEALQEIAQQ 360

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAE 417
           A+   +     GAR L+++ME +L  I F+  +  EKT  VVI  E
Sbjct: 361 ALARET-----GARGLRSIMESILLPIMFAIPE-DEKTGEVVITGE 400


>gi|15639499|ref|NP_218949.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025738|ref|YP_001933510.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225173|sp|O83521|CLPX_TREPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689324|sp|B2S3A2|CLPX_TREPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3322800|gb|AAC65496.1| ATP-dependent Clp protease subunit X (clpX) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018313|gb|ACD70931.1| ATP-dependent Clp protease subunit X [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059885|gb|ADD72620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 415

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 57/218 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQDMLRV 236

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------L 312
           +T +ILFI  GAF               V   AD                         L
Sbjct: 237 DTSNILFICGGAFVGLDGIVGTRVCKNPVGFGADVKTVKERGLQLMHEDVIPDDLVKFGL 296

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PEI GR PV V L +L+K D R IL    + ++ Q++ L   + + L F ED++DA+A 
Sbjct: 297 IPEIIGRLPVTVALDALSKEDLRNILVRPRNAIVRQFEALFALDDVRLVFDEDALDAIAQ 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            A++  +     GAR L++++ER++ D  F A  L+ K
Sbjct: 357 QAIDQKT-----GARGLRSIVERLMLDAMFEAPSLKGK 389



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPK-NILLVGPTGVG 65
           +P E+ + LD+Y+IGQ  AKR +++A+ N ++R      D+   L+ K N+LL+GPTG G
Sbjct: 63  TPLELKAYLDQYVIGQDLAKRVLSVAVYNHYKRVAGRSLDIDSVLIEKSNVLLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ L++    PF   + T  TE GYVG +VE I+  LV  A
Sbjct: 123 KTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNA 167


>gi|313633468|gb|EFS00292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri FSL N1-067]
 gi|313638158|gb|EFS03414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri FSL S4-171]
          Length = 419

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEATLVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E ++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEHIMLEVMF 379


>gi|291276286|ref|YP_003516058.1| ATP-dependent clp protease ATP-binding subunit ClpX [Helicobacter
           mustelae 12198]
 gi|290963480|emb|CBG39310.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           mustelae 12198]
          Length = 425

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 3/116 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
           F+P+E+  +LD Y+IGQ+ AK+  ++A+ N ++R   +Q  A+   E+   NIL +GPTG
Sbjct: 68  FTPKELKQKLDDYVIGQERAKKVFSVAIYNHYKRILSRQHAAEDDVEIAKSNILFIGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ +A+    P    + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 128 SGKTLMAQTIAKALNVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVARAQR 183



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  +
Sbjct: 184 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQM 243

Query: 292 NTDHILFIASGAFH-----VSR---------------------------------PADLL 313
           +T  ILF+  GAF      + R                                    ++
Sbjct: 244 DTSDILFVCGGAFDGLSEIIKRRLGKNVLGFGTEKKEKQLDEENILQFVETDDLIAYGMI 303

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR  V   L+ + K     I+T  ++ +I QYK+L   + + L F E +++ +AD+
Sbjct: 304 PEFIGRLHVIATLEMITKEAMMSIMTKPKNAIIKQYKKLFALDDVGLVFEEAALEKIADL 363

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A+     +  IGAR L+ ++E +  D+ F    L+   V+I  E V
Sbjct: 364 AI-----IRKIGARGLRAIVEEICTDVMFDLPSLKGYDVIITQEAV 404


>gi|271965030|ref|YP_003339226.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270508205|gb|ACZ86483.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 431

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-ELMPKNILLV 59
           PREI   L++Y++GQ+ AK+ +++A+ N ++R         + PA+    EL   NILL+
Sbjct: 64  PREIYEFLEQYVVGQESAKKTLSVAVYNHYKRIRPGAAGNGRPPAEKEPVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GPTGCGKTYLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLLQAA 174



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 184 GIVYIDEIDKVARKGENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFIQI 243

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI  GAF            R                         P DLL    
Sbjct: 244 DTGNVLFIVGGAFAGLEQIIEQRAGRRGAGFGAAIPAREEQEKQDAFAEVMPEDLLKFGL 303

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE+ GR PV    + L+++    ILT+  + LI QY++L + +G+ L+F E ++ A+A+
Sbjct: 304 IPELVGRLPVLSTFQPLDRTALVRILTEPRNALIKQYQKLFEIDGVELEFAEGAVGAIAE 363

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR  + V+E VL ++ +
Sbjct: 364 QAL-LRRT----GARATRAVLEEVLLNVMY 388


>gi|297587290|ref|ZP_06945935.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 53516]
 gi|297575271|gb|EFH93990.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 53516]
          Length = 411

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD Y+I Q++ K+A+A+A+ N ++R  + ++L +   EL   NILLVGPTG G
Sbjct: 62  PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++  LA++   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233

Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313
           +T +ILFI  GAF                             +S      RP DL+    
Sbjct: 234 DTKNILFIVGGAFDGLEKIIEKRTETKSIGFGADLGENEHKRISELFKDIRPEDLIKFGL 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED++ A+A 
Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIKILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +A +  +     GAR L+T++E+ L +I F     Q+ + VI
Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390


>gi|167855228|ref|ZP_02477998.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219872048|ref|YP_002476423.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           parasuis SH0165]
 gi|167853681|gb|EDS24925.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219692252|gb|ACL33475.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           SH0165]
          Length = 416

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 9/107 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R  L   L D       EL   NILL+G
Sbjct: 67  TPHEIHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRNALSDNKESEGVELGKSNILLIG 124

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 125 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 171



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     +   VS EGVQ+ LL L+EG+  +++ + G          +
Sbjct: 184 GIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQETIPV 243

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 244 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKF 303

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L K EG+ L FT+D++ A+
Sbjct: 304 GLIPELIGRLPVITPLEELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAI 363

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A  A++  +     GAR L++++E +L D  +    L+   V +    V
Sbjct: 364 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPSLKASKVTVSKNCV 407


>gi|304437816|ref|ZP_07397765.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369173|gb|EFM22849.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 431

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290
           +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G         
Sbjct: 190 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 248

Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311
             ++T +ILFI  GAF                                     H   P D
Sbjct: 249 IKVDTKNILFIVGGAFVGIEKIIAKRLKKGNVAMGFGAEVRGKDLEKEYDALIHQVTPED 308

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ L FTED+
Sbjct: 309 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVELVFTEDA 368

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A+   +     GAR L+ ++E V+ D+ F
Sbjct: 369 LRAVAKKAIERKT-----GARSLRGIIEEVMLDVMF 399



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P  I   LD YII Q  AK+ +A+A+ N ++R +   + ++    E+   N++++GP+G 
Sbjct: 76  PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181


>gi|156741458|ref|YP_001431587.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus
           castenholzii DSM 13941]
 gi|156232786|gb|ABU57569.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseiflexus
           castenholzii DSM 13941]
          Length = 436

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG                +Y S 
Sbjct: 190 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGCVAHVPPVPGRKHPQQEYISF 249

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T H+LFI  GAF                   H   P+D                   +P
Sbjct: 250 DTTHVLFICGGAFEGLDKIIDQRIGGKRSIGFHAGEPSDAPTSLLSQVTPDDLLRYGFIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+K     ILT+  + +I QY++++  + + L+ T D+++A+AD A
Sbjct: 310 EFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDALEAIADRA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   +     GAR L+T++E +L D+ +     +     +I+AE V
Sbjct: 370 LRSKT-----GARALRTIVEDILLDVMYEVPSQEHIGRCIINAEVV 410



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR +   LD+Y+IGQ  AK  +++A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 77  TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQSADDIEIGKSNILLIGPTGSGK 136

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 180


>gi|289434551|ref|YP_003464423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170795|emb|CBH27337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 419

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E ++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEHIMLEVMF 379


>gi|225459904|ref|XP_002264217.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 665

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 15/118 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD---ELM 52
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R            +   +++ D   EL 
Sbjct: 248 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHGSLQKGSGAESGTSEVDDDSVELE 307

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 308 KSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVA 365



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 70/257 (27%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284
           L  + TV   ++Q  +  G+V++DE DKI  +     +   VS EGVQ+ LL ++EG+ V
Sbjct: 358 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIV 416

Query: 285 ST-KYGS----------INTDHILFIASGAF----------------HVSRPA------- 310
           +  + G+          I+T  ILFI  GAF                    P        
Sbjct: 417 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTG 476

Query: 311 -----------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GRFP+ V L +L +     +LT+ ++ L  
Sbjct: 477 GLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGK 536

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK+L     + L FTE ++  +A  A+     V + GAR L+ ++E +L +  +   D+
Sbjct: 537 QYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRALLESILTEAMYEIPDV 591

Query: 408 QEK-----TVVIDAEYV 419
           +        VV+D E V
Sbjct: 592 KTGKDRVDAVVVDEESV 608


>gi|145219376|ref|YP_001130085.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|189044142|sp|A4SDM4|CLPX_PROVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145205540|gb|ABP36583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeovibrioides DSM 265]
          Length = 438

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 5/116 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63
           SP+ ++  LD+Y++GQ+ AK+A+++A+ N ++R   Q+   D  + ++ K NI+L+GPTG
Sbjct: 81  SPKALMESLDQYVVGQERAKKALSVAVYNHYKRIDSQEWQHDDDEVVIEKSNIMLIGPTG 140

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 196



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 61/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254

Query: 290 SINTDHILFIASGAFH-----VSR---------------------PA------------- 310
           +INT +ILFI  GAF      ++R                     P              
Sbjct: 255 NINTKNILFICGGAFEGLDRLIARRMSKSSMGFGAGVADKKAGYDPGILKFVMQDDLHEY 314

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++   R IL + ++ LI QY +L + +G+ L+F  +S+D +
Sbjct: 315 GLIPEFIGRLPVLSSLEPLDEHALRSILVEPKNALIKQYAKLFEMDGVELEFAPESLDRV 374

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
             +A+   +     GAR L++V+E V+ DI F    ++
Sbjct: 375 VAIALERGT-----GARALRSVLENVMIDIMFELPSMK 407


>gi|157828915|ref|YP_001495157.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933640|ref|YP_001650429.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           rickettsii str. Iowa]
 gi|166215199|sp|A8GTC4|CLPX_RICRS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044145|sp|B0BUW3|CLPX_RICRO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157801396|gb|ABV76649.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908727|gb|ABY73023.1| ClpX [Rickettsia rickettsii str. Iowa]
          Length = 425

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYIQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTVLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  + +   L   + +++ +A+
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALETIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|326330781|ref|ZP_08197082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
 gi|325951311|gb|EGD43350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
          Length = 430

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 13/115 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD----------ELMPKN 55
           P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R Q    P   +           E+   N
Sbjct: 64  PKEIFDFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPGGPQGPGKHAKEEQVEVAKSN 123

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           IL++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 ILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 178



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 188 GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 247

Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312
           +T +ILF+  GAF    H+                               RP DL     
Sbjct: 248 DTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVRGKAEKESEDLLKLVRPEDLTKFGL 307

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   ++ L+++    ILT+  + L+ QY++L   +G+ L+FT+D++ A+AD
Sbjct: 308 IPEFIGRLPLIASVEKLDQAALVKILTEPRNALVKQYQKLFDLDGVDLEFTDDAVTAIAD 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+   +     GAR L+ ++E VL
Sbjct: 368 KALERGT-----GARGLRAIIEEVL 387


>gi|16803308|ref|NP_464793.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes EGD-e]
 gi|46907495|ref|YP_013884.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47093916|ref|ZP_00231655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 4b H7858]
 gi|47097411|ref|ZP_00234960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 1/2a F6854]
 gi|217964589|ref|YP_002350267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes HCC23]
 gi|224499060|ref|ZP_03667409.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes Finland 1988]
 gi|224501786|ref|ZP_03670093.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL R2-561]
 gi|226223871|ref|YP_002757978.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes Clip81459]
 gi|254824671|ref|ZP_05229672.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL J1-194]
 gi|254828631|ref|ZP_05233318.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL N3-165]
 gi|254829975|ref|ZP_05234630.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 10403S]
 gi|254852678|ref|ZP_05242026.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-503]
 gi|254898567|ref|ZP_05258491.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes J0161]
 gi|254911943|ref|ZP_05261955.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes J2818]
 gi|254932415|ref|ZP_05265774.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
 gi|254936269|ref|ZP_05267966.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes F6900]
 gi|255025712|ref|ZP_05297698.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J2-003]
 gi|255030295|ref|ZP_05302246.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes LO28]
 gi|255520250|ref|ZP_05387487.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J1-175]
 gi|284801653|ref|YP_003413518.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284994795|ref|YP_003416563.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|290894517|ref|ZP_06557470.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL J2-071]
 gi|300765304|ref|ZP_07075288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL N1-017]
 gi|21263464|sp|Q8Y7K9|CLPX_LISMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211533|sp|Q720F3|CLPX_LISMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763852|sp|B8DHN7|CLPX_LISMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491262|sp|C1L2H6|CLPX_LISMC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16410684|emb|CAC99346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes EGD-e]
 gi|46880763|gb|AAT04061.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47014210|gb|EAL05194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47017702|gb|EAL08496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 4b H7858]
 gi|217333859|gb|ACK39653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes HCC23]
 gi|225876333|emb|CAS05042.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258601030|gb|EEW14355.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL N3-165]
 gi|258605996|gb|EEW18604.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-503]
 gi|258608858|gb|EEW21466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes F6900]
 gi|284057215|gb|ADB68156.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284060262|gb|ADB71201.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|290555929|gb|EFD89490.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL J2-071]
 gi|293583972|gb|EFF96004.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
 gi|293589904|gb|EFF98238.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes J2818]
 gi|293593910|gb|EFG01671.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL J1-194]
 gi|300513987|gb|EFK41050.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL N1-017]
 gi|307570847|emb|CAR84026.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           monocytogenes L99]
 gi|313609092|gb|EFR84801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL F2-208]
 gi|328468558|gb|EGF39558.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 1816]
 gi|328475113|gb|EGF45897.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 220]
 gi|332311713|gb|EGJ24808.1| ATP-dependent Clp protease [Listeria monocytogenes str. Scott A]
          Length = 419

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   ++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379


>gi|16800375|ref|NP_470643.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria innocua
           Clip11262]
 gi|315282077|ref|ZP_07870567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           marthii FSL S4-120]
 gi|21263473|sp|Q92C84|CLPX_LISIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16413780|emb|CAC96538.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           innocua Clip11262]
 gi|313614279|gb|EFR87933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           marthii FSL S4-120]
 gi|313623989|gb|EFR94087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           innocua FSL J1-023]
          Length = 419

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   ++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379


>gi|315302900|ref|ZP_07873639.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           ivanovii FSL F6-596]
 gi|313628732|gb|EFR97126.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           ivanovii FSL F6-596]
          Length = 419

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379


>gi|227833710|ref|YP_002835417.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184717|ref|ZP_06044138.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254763843|sp|C3PI25|CLPX_CORA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|227454726|gb|ACP33479.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 431

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKNI 56
           P EI + LD+Y+IGQ  AKR +++A+ N ++R            ++   D   E+   NI
Sbjct: 68  PSEISAFLDKYVIGQDQAKRVLSVAVYNHYKRIKAEEAAGLEGRRKKAQDEEVEISKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 57/216 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYG 289
            +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++ 
Sbjct: 189 QHGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFI 248

Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADL--- 312
            ++T +ILFI +GAF                                     RP DL   
Sbjct: 249 QLDTTNILFIVAGAFAGLDKVISERVGKKGVGFGAKLETKDEKESVDFFSQVRPEDLVKF 308

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE  GR PV   + +L++     +L + +++L+ QY+ L   +G  L F +++++A+
Sbjct: 309 GLIPEFIGRLPVVATVDNLDRESLVKVLVEPKNSLVKQYQRLFSMDGAELHFEDEALEAI 368

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           A++A+   +     GAR L+ +ME +L  I +   D
Sbjct: 369 AELALERKT-----GARGLRAIMEELLVPIMYDLPD 399


>gi|167761340|ref|ZP_02433467.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704]
 gi|167661006|gb|EDS05136.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704]
          Length = 475

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 72/114 (63%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I ++LD Y++GQ+ AK+A+++A+ N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 124 APHKIKAKLDDYVVGQEYAKKAMSVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 181

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N + ++ +
Sbjct: 182 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAENDIEKAEQ 235



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 236 GIIFIDEIDKIAKKKNSSQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 295

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 296 KNILFICGGAFPDLEGIIKERLTKQSSIGFGADLKDKYDHDKTILEKVTTEDLRNFGMIP 355

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ +N+     IL + ++ ++ QY++L+  + + L F + +++A+A  A
Sbjct: 356 EFLGRLPIVFTLQGMNEHMLIKILKEPKNAILKQYQKLLALDEVNLLFDDGALEAIAKKA 415

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +       D GAR L+ ++E  + DI +    D     V I  EY+ 
Sbjct: 416 MK-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITREYIE 457


>gi|120554757|ref|YP_959108.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
 gi|166214783|sp|A1U1Q2|CLPX_MARAV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120324606|gb|ABM18921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
          Length = 427

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRETLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKSDVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311
           +T +ILFI  GAF                     V    D                    
Sbjct: 242 DTGNILFICGGAFAGLDKVIQERSERSSIGFSATVKSQDDSKSTGDIIREVETEDLVKFG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     ILT+ ++ L  QY++L   EG+ LDF ED++ A+A
Sbjct: 302 LIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
             A+   +     GAR L+++ME  L D  +   S+     VVID   ++
Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVIDESVIK 406


>gi|254302271|ref|ZP_04969629.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322463|gb|EDK87713.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 423

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S ++++E T+  DA
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDA 411


>gi|94968587|ref|YP_590635.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550637|gb|ABF40561.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Koribacter versatilis Ellin345]
          Length = 423

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 6/106 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64
           P E+ + LD Y+IGQ   K+ +++A+ N ++R    +Q   ++  EL   NILLVGPTG 
Sbjct: 69  PLEVKTFLDEYVIGQDQTKKKLSVAVYNHYKRVFMNRQRSGEV--ELQKSNILLVGPTGT 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 127 GKTLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 62/233 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 241

Query: 292 NTDHILFIASGAF--------------------------------------HVSRPADLL 313
           +T +ILFI  GAF                                        S P DL+
Sbjct: 242 DTTNILFIVGGAFVGLEKIVGRRLGKRALGFRDEEKEKNFTSANNRDSEMLQRSEPQDLI 301

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L+++    ILT  ++ ++ QY+ L + E + L F+++++ 
Sbjct: 302 KFGLIPEFVGRLPVMGVLNDLDENALVEILTKPKNAIVKQYQRLFEFENVKLKFSDEAVR 361

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A+A  A+        +GAR L+ ++E ++ D+ +S  S  + K   + AE V+
Sbjct: 362 AIAREAMQRK-----VGARGLRMILEELMLDLMYSLPSQKRVKEFEVTAEMVQ 409


>gi|291532658|emb|CBL05771.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas
           hypermegale ART12/1]
          Length = 330

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 64/237 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290
           +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EG  V  T  G         
Sbjct: 82  HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQGLLKMMEGGVVEFTAQGQRKHPEAPT 140

Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311
             ++T +ILFI  GAF                                     H  RP D
Sbjct: 141 IKVDTTNILFIVGGAFVGIEEIIAKRLKTDNSGIGFGANVKTKNDKPVFNDLIHKVRPED 200

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PEI GR PV   L+ L + D   ILT+ ++  + QY+EL+  + + L+F  D+
Sbjct: 201 LIKFGIIPEIIGRLPVICTLEELTEDDLLKILTEPKNAPVRQYQELLAMDKVKLEFEHDA 260

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+ ++E V+ DI +      E + V+I  + +  H
Sbjct: 261 LLAVAKKAIERKT-----GARSLRGILEDVMLDIMYEIPQSDEPRKVIITKDCIENH 312


>gi|260654936|ref|ZP_05860424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
           anthropi E3_33 E1]
 gi|260630251|gb|EEX48445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
           anthropi E3_33 E1]
          Length = 435

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 57/211 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI++LDE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G         +
Sbjct: 184 HGIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIA 243

Query: 291 INTDHILFIASGAF-------------HV---------------------SRPADLL--- 313
           I+T +ILFI +GAF             HV                       P DL+   
Sbjct: 244 IDTRNILFICAGAFDGLEEIIARRLNRHVIGFGGENQERKRDVSYDLLSQVEPEDLIHYG 303

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR P+ V L++L++     +LT+ +++L+ QY+ +   EG  L+FT  ++ A+A
Sbjct: 304 FIPELTGRLPLAVALRTLDEDALVRVLTEPKNSLVRQYQAIFAQEGAELEFTPQALRAIA 363

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             AVN  +     GAR L+++ME ++ D+ +
Sbjct: 364 QKAVNKKA-----GARGLRSIMENLMLDLMY 389



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P E+ + LD Y+IGQ  AK+A+++A+ N +RR    A  ++    EL   N+LL+GPTG 
Sbjct: 70  PAEMKAFLDEYVIGQDQAKKALSVAVYNHYRRIGWLALAQESEDVELQKSNLLLLGPTGS 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 130 GKTLLAQTLARKLNVPFAMSDATTLTEAGYVGEDVENILLRLIQAA 175


>gi|148241164|ref|YP_001226321.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           RCC307]
 gi|166215217|sp|A5GQ09|CLPX_SYNR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147849474|emb|CAK26968.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus
           sp. RCC307]
          Length = 449

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI + LD  ++GQ DAK+ +++A+ N ++R     D   E       L   NILL+GP
Sbjct: 84  PQEIKAHLDEQVVGQNDAKKVLSVAVYNHYKRLAWQGDGSTEPESSATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMMEVPFAVADATTLTEAGYVGEDVENILLRLLQKADGDVEQAQR 201



 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 62/215 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF------------------------------------HVSR---PADL 312
           +T  ILFI  GAF                                     V R   P DL
Sbjct: 262 DTSQILFICGGAFVGLDDVIQRRMGRNAIGFVPGETRNGRSRQKDQEASQVLRNLEPDDL 321

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L+F  +++
Sbjct: 322 VKYGLIPEFIGRIPVSAVLEPLDEQALEAILTEPRDALVKQFQTLLSMDSVRLEFQPEAV 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 RAIAREAHRRKT-----GARALRGIIEDLMLDLMY 411


>gi|320332659|ref|YP_004169370.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           maricopensis DSM 21211]
 gi|319753948|gb|ADV65705.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           maricopensis DSM 21211]
          Length = 398

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SPREI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPTG GKT
Sbjct: 57  SPREIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP---DANLGKSNILLIGPTGTGKT 113

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++  LA +   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 114 LLASSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 156



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 52/222 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+   V  + G          +
Sbjct: 166 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 225

Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317
           NT +ILFI  GAF     + R                         P DL     +PE  
Sbjct: 226 NTKNILFIVGGAFDGIADIGRSRTNIRSVGFGAEHKGDEKEELRFMPEDLVKFGLIPEFV 285

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L+ L +     ILT+ +  ++ QY+ L   + + L+FTE+++  +A  A   
Sbjct: 286 GRLPLVVQLQDLGEDALVRILTEPQGAIVRQYQALFGFQDVDLNFTEEALQEVARRAKAR 345

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +     GAR L+ V+E+ + D+ F       + +  DAE++
Sbjct: 346 GT-----GARGLRAVLEKSMTDLLFELPAEGLRELRFDAEHI 382


>gi|225465277|ref|XP_002268594.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 639

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R            +   A++ +      
Sbjct: 189 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 248

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 249 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILHKLLMV 308

Query: 110 A 110
           A
Sbjct: 309 A 309



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI   A     G  VS EGVQ+ LL ++EG+  +V  K G          I
Sbjct: 319 GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 378

Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311
           +T  ILFI  GA                  F     A+                      
Sbjct: 379 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 438

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++    + L FTE+
Sbjct: 439 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 498

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T ++DA  V
Sbjct: 499 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 547


>gi|169824904|ref|YP_001692515.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 29328]
 gi|167831709|dbj|BAG08625.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 29328]
          Length = 411

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD Y+I Q++ K+A+A+A+ N ++R  + ++L +   EL   NILLVGPTG G
Sbjct: 62  PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++  LA++   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233

Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313
           +T +ILFI  GAF                             +S      RP DL+    
Sbjct: 234 DTRNILFIVGGAFEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGL 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED++ A+A 
Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +A +  +     GAR L+T++E+ L +I F     Q+ + VI
Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390


>gi|152992701|ref|YP_001358422.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurovum sp.
           NBC37-1]
 gi|151424562|dbj|BAF72065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurovum
           sp. NBC37-1]
          Length = 406

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65
           ++P+EI + LD YIIGQ+ AK+ +++A+ N ++R  +  +D   +L   N+LL+GPTG G
Sbjct: 58  YTPKEINALLDEYIIGQEGAKKTLSVAVYNHYKRIFRNISDDDTQLAKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ +AR    P    + T  TE GYVG +VE I+  L+
Sbjct: 118 KTLLAQTIARFLNVPIAIADATNLTEAGYVGEDVENILTKLL 159



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL L+EGS V+             +  I
Sbjct: 172 GIVFIDEIDKIARMGENRSITRDVSGEGVQQALLKLIEGSVVNIPPKGGRKHPNQDFIQI 231

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                H+    DL     +P
Sbjct: 232 DTSNILFICGGAFDGLNDIIKRRLGGNTLGFGQEKRSKSEEENMLHLVESDDLVSYGLIP 291

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + K D   IL + +++L+ QY++L + + + L F ED++  +A  A
Sbjct: 292 ELIGRLHVLATLGKITKEDMVRILIEPKNSLVKQYQKLFEIDDVKLTFEEDALSLIAQKA 351

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +     GAR L+++ME VL DI +   +L    V+I  E V
Sbjct: 352 IDRKT-----GARGLRSIMEEVLLDIMYDLPELAGYEVIITEEVV 391


>gi|302379712|ref|ZP_07268197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234237|ref|ZP_07320883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna BVS033A4]
 gi|302312619|gb|EFK94615.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494778|gb|EFL54538.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna BVS033A4]
          Length = 411

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P EI   LD Y+I Q++ K+A+A+A+ N ++R  + ++L +   EL   NILLVGPTG G
Sbjct: 62  PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++  LA++   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233

Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313
           +T +ILFI  GAF                             +S      RP DL+    
Sbjct: 234 DTRNILFIVGGAFEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDIRPEDLIKFGL 293

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED++ A+A 
Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +A +  +     GAR L+T++E+ L +I F     Q+ + VI
Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390


>gi|238926708|ref|ZP_04658468.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885465|gb|EEQ49103.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 431

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290
           +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G         
Sbjct: 190 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 248

Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311
             ++T +ILFI  GAF                                     H   P D
Sbjct: 249 IKVDTKNILFIVGGAFVGIEKIIAKRLKKGNVAMGFGAEVRGKDLEKEYDALIHQVTPED 308

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ L FTED+
Sbjct: 309 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVELVFTEDA 368

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A+   +     GAR L+ ++E V+ D+ F
Sbjct: 369 LRAVAKKAIERKT-----GARSLRGIIEEVMLDVMF 399



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P  I   LD YII Q  AK+ +A+A+ N ++R +   + ++    E+   N++++GP+G 
Sbjct: 76  PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181


>gi|213966172|ref|ZP_03394358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
 gi|213951187|gb|EEB62583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
          Length = 443

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P EI   LD Y+IGQ  AKR +A+A+ N ++R    +  +D   EL   NILL+GPTG G
Sbjct: 89  PMEIRDFLDEYVIGQDMAKRTLAVAVYNHYKRLRAAETKSDNDVELQKSNILLLGPTGCG 148

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+      V +++R
Sbjct: 149 KTYLAQTLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQATDFDVEKAQR 202



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 57/222 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++   
Sbjct: 203 GIIYVDEIDKISRKSENTSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKLPNQEFIQF 262

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T ++LFI +GAF          V +                         P DL     
Sbjct: 263 DTSNVLFIVAGAFAGLEKVVQERVGKKGLGFGADVTSANDEDMKDPFRDVLPEDLVRFGL 322

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+ +++L+ QY+ L   +G+ L   ++++ A+A 
Sbjct: 323 IPEFIGRLPVIASVTNLDEDALVRVLTEPKNSLVRQYQHLFDMDGVRLTIDDEALRAIAA 382

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            A++ N+     GAR L+ +ME +L  + F   +  + T VI
Sbjct: 383 KAISRNT-----GARGLRGIMEEILVPVMFEVPERDDVTEVI 419


>gi|159900346|ref|YP_001546593.1| ATP-dependent protease ATP-binding subunit ClpX [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|238687098|sp|A9B8B2|CLPX_HERA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|159893385|gb|ABX06465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 432

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 2/98 (2%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
            LD Y+IGQ  AK+ +A+A+ N ++R   Q   D   E+   NILLVGPTG GKT +++ 
Sbjct: 74  HLDEYVIGQDRAKKVMAVAVYNHYKRLRAQAQGDTDVEIQKSNILLVGPTGSGKTLLAQT 133

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 134 LARMLDVPFAIADATALTEAGYVGEDVETILLRLIQAA 171



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 70/253 (27%)

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           RLI       D  QM    GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  
Sbjct: 166 RLIQAADGDVDRAQM----GILYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGV 221

Query: 284 VST-----------KYGSINTDHILFIASGAF-----HVSR------------------- 308
           V+            ++   +T ++LFI  GAF     H++                    
Sbjct: 222 VNVPPMPGRKHPQQEFIPFDTTNVLFICGGAFEGLEHHIAERMGSGGTLGFGKTIVKEER 281

Query: 309 ------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                       P DLL     PE  GR PV   L  L+K     ILT+  + +I QY++
Sbjct: 282 LERSKKLLSLVNPDDLLHFGFIPEFIGRMPVVAALTPLDKDAMMRILTEPRNAIIKQYQK 341

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           ++  + + L+ + D+++A+ + A+      G  GAR L+T +E +L D+ F   DL  +T
Sbjct: 342 MLALDHVQLEVSGDAMEAIVERAL-----AGKTGARGLRTAVEEILLDVMF---DLPSET 393

Query: 412 ----VVIDAEYVR 420
                VI AE VR
Sbjct: 394 DVVRCVITAETVR 406


>gi|319900083|ref|YP_004159811.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           helcogenes P 36-108]
 gi|319415114|gb|ADV42225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           helcogenes P 36-108]
          Length = 414

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K   +
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIPV 238

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYGAVRNTSVIDKNNMMQYIAPQDLKSFGLI 298

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L++   R ILT+ ++++I QY +L + + + L F +   + + D 
Sbjct: 299 PEIIGRLPVLTYLNPLDRMALRAILTEPKNSIIKQYIKLFEMDNVKLTFDDAVFEYIVDK 358

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           A+        +GAR L++++E ++ D+ F      +   V+  +Y +
Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDVMFEIPSEHKDNFVVTLDYAK 400



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI + LD+Y+IGQ DAKR +++++ N ++R  Q+   D   E+   NI++VG TG GK
Sbjct: 67  PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKESGD-DVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169


>gi|162451420|ref|YP_001613787.1| ATP-dependent protease ATP-binding subunit ClpX [Sorangium
           cellulosum 'So ce 56']
 gi|161162002|emb|CAN93307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sorangium
           cellulosum 'So ce 56']
          Length = 418

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I + LD Y++GQ  AK+ +A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 67  PADIKATLDEYVVGQNRAKKILAVAVHNHYKRIDSRVSSDDVELSKSNILLLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA++   PF   + T  TE GYVG +VE II  L+  A + V  ++R
Sbjct: 127 LLAQTLAKIINVPFAIADATTLTEAGYVGEDVENIIVQLLQNADHDVERAQR 178



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  K G          +
Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQDFLQV 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   V +P DLL    
Sbjct: 239 DTTNILFICGGAFVGLDQIIQRRIGQNTLGFGADIKAKKDFKLGDLLSVVQPEDLLKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  LN+     ILT  +++L+ QY++L + +G+ + FT  ++ A+A 
Sbjct: 299 IPEFIGRLPVVATLHELNEEALIDILTKPKNSLVKQYQKLFEMDGVKVKFTRGALVAVAR 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+  NS     GAR L+ ++E  + DI +
Sbjct: 359 QALERNS-----GARGLRAILESAMLDIMY 383


>gi|224535962|ref|ZP_03676501.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522417|gb|EEF91522.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 415

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI   LD+Y+IGQ DAKR +++++ N ++R  L  D  D  E+   NI++VG TG GK
Sbjct: 68  PLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 97/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            K   +
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239

Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313
           NT +ILFI  GAF             HV                      P DL     +
Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTAVIDKSNMMQYIAPQDLKSFGLI 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + L F     + + D 
Sbjct: 300 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDNVELTFEATVFEYIVDK 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           AV        +GAR L++++E ++ D  F
Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDAMF 383


>gi|242279531|ref|YP_002991660.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
 gi|242122425|gb|ACS80121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
          Length = 417

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
            SP+EI   LD Y+IGQ+  K+ +A+A+ N ++R    Q       E+   NILL+GPTG
Sbjct: 62  LSPQEIKELLDEYVIGQEHPKKILAVAVHNHYKRVYYTQSSGTDDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKISRKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                    + PADL     
Sbjct: 238 DTSNILFILGGAFIGLDTIVQQRMSGSGIGFGAKVEQKSDKGISELFAKAEPADLVKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV+  L  L++ D   IL + ++ L+ QYK++ + +G+ L FT +++ ++A 
Sbjct: 298 IPEFVGRIPVQTALSELSEEDLVRILQEPKNALVKQYKKMFELDGVRLTFTANALKSIAA 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ V+E ++ DI +
Sbjct: 358 KAVERKT-----GARGLRNVLESIMLDIMY 382


>gi|300774297|ref|ZP_07084161.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300506941|gb|EFK38075.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 378

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+            KY  +
Sbjct: 156 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 215

Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313
           NT +ILFIA GAF                                  +++    R   L+
Sbjct: 216 NTQNILFIAGGAFDGIKEIIERRMNKQAIGFSSEKINKTDEDEYILTNINAIDLRTFGLI 275

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GRFP+  +L  L K     I+ + +++++ Q+ EL K +G  L  T+ +I+ + + 
Sbjct: 276 PELLGRFPIITYLDKLTKETLVRIMKEPKNSIVNQFVELFKMDGTNLVITDGAIEKIVEE 335

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +        +GAR L+   E+VLED  FS    +EK +++  + V ++
Sbjct: 336 TIEKG-----LGARGLRGTTEKVLEDYMFSIG--EEKEIILTEDNVLIN 377



 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   LD+Y+IGQ  AK+ ++IA+ N ++R     D   E  L   NI+++G TG GK
Sbjct: 43  PKEIKEFLDQYVIGQDQAKKQLSIAVYNHYKRLLHAQDENREVELEKSNIIMIGETGTGK 102

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA
Sbjct: 103 TLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 146


>gi|15892991|ref|NP_360705.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str.
           Malish 7]
 gi|21263474|sp|Q92GQ4|CLPX_RICCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15620188|gb|AAL03606.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           conorii str. Malish 7]
          Length = 425

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  +     LD  E  ID  A 
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|229587051|ref|YP_002845552.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia africae
           ESF-5]
 gi|259491267|sp|C3PLG9|CLPX_RICAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|228022101|gb|ACP53809.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           africae ESF-5]
          Length = 425

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEVEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  +     LD  E  ID  A 
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +   +     GAR L++++E +L D  +  ++L+++ V I  E V
Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397


>gi|163815486|ref|ZP_02206859.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759]
 gi|158449123|gb|EDP26118.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759]
          Length = 525

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 23/158 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  +  D  D  E+   N+L+VGPTG G
Sbjct: 174 APHKIKAMLDEYVVGQEYAKKVISVAVYNHYKR--VLTDTMDDIEIEKSNMLMVGPTGCG 231

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I + +A+L   P    + T  TE GY+G +VE ++  L+  A N V ++ R     D
Sbjct: 232 KTYIVKTIAKLLQVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERGIVFID 291

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           E+ +              + K   SN+R+V  + ++ G
Sbjct: 292 EIDK--------------IAKKQNSNSRDVSGESVQQG 315



 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GIVF+DE DKI  + + N   VS E VQ+ LL L+EG+ V    GS           INT
Sbjct: 286 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINT 345

Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314
            +ILFI  GAF          +S+ A                               ++P
Sbjct: 346 RNILFICGGAFPDLEDIIKRRISKQASMGFKAELKDKYDDEPNLLRQVTTEDLRDFGMIP 405

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L +L+K  +  IL + ++ ++ QYK+L+  + + L F + + +A+A  A
Sbjct: 406 EFLGRLPVVFTLDALDKDMYIKILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIASEA 465

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           V   +     GAR L+ ++E+ + DI +    D     V I  +Y+R
Sbjct: 466 VKRKT-----GARALRAIIEKFMLDIMYQIPRDDTIGRVTITGDYIR 507


>gi|300361498|ref|ZP_07057675.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354117|gb|EFJ69988.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           gasseri JV-V03]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FT+ ++ A+AD+
Sbjct: 297 PEFIGRIPIITTLDKLSTEDLIRILTEPKNALVKQYKKLLSLDNVDLEFTDGALKAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++ +     +GAR L++++E  L D+ +
Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380


>gi|227889795|ref|ZP_04007600.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849659|gb|EEJ59745.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FT+ ++ A+AD+
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           A++ +     +GAR L++++E  L ++ + + SD   + V I  + +  H
Sbjct: 357 AISRH-----MGARGLRSIVENSLMNVMYRTPSDDNIQEVQITKDVITKH 401


>gi|329667519|gb|AEB93467.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii DPC 6026]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QY++L+  + + L+FT+ ++ A+AD+
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYEKLLSLDDVDLEFTDGALQAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           A++ +     +GAR L++++E  L D+ + + SD   K V I  + +  H
Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 401


>gi|268319667|ref|YP_003293323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii FI9785]
 gi|262398042|emb|CAX67056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii FI9785]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EG Q+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGGQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FT+ ++ A+AD+
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           A++ +     +GAR L++++E  L D+ + + SD   + V I  + +  H
Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMYRTPSDDNIQEVQITKDVITKH 401


>gi|119485224|ref|ZP_01619609.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106]
 gi|119457452|gb|EAW38577.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106]
          Length = 445

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRDELMPKNILLVGP 61
           P EI + LD ++IGQ +AK+ +++A+ N ++R        +  ++   EL   NILL+GP
Sbjct: 83  PIEIKAHLDNHVIGQDEAKKVLSVAVYNHYKRLGFIQGKSRQSSEDNIELQKSNILLIGP 142

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 143 TGSGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 201 GIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILF+  GAF                                       P DL    
Sbjct: 261 DTSNILFVCGGAFVGLDRIIDQRTGKKSMGFIQGEKEQVKDQQSPETLKKMEPDDLVKFG 320

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + + L+F ED+I A+A
Sbjct: 321 LIPELIGRIPMVAVLDPLDEKTLMAILTEPRSALVKQYQKLLRMDNVQLEFEEDAIQAIA 380

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 381 QEAFRRKT-----GARALRGIVEELMLDVMY 406


>gi|320535321|ref|ZP_08035440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
 gi|320147821|gb|EFW39318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
          Length = 414

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 57/218 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQDMLKI 235

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312
           +T +ILFI  GAF          +S+                         P DL     
Sbjct: 236 DTSNILFICGGAFVGLDKIVEARISQHPIGFGADIKTIKDKRLDELYDNLSPDDLVKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PEI GR P+ V L  L K D R ILT+  + +I Q++   K + + L F   +++A+A 
Sbjct: 296 IPEIIGRLPITVALNELTKDDLRKILTEPRNAIIKQFEASFKQDDVKLIFENSALNAIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +A++ N+     GAR L++++E+++ D  F A  ++ K
Sbjct: 356 LAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGK 388



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPK-NILLVGPTGVG 65
           +P E    LD+YIIGQ  AKR +++A+ N ++R    P +  D ++ K N+LLVGPTG G
Sbjct: 62  TPAEFKEYLDQYIIGQDKAKRVLSVAVYNHYKRIINKPKEKDDVVIEKSNVLLVGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 KTLLAKTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166


>gi|160895261|ref|ZP_02076033.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50]
 gi|156863140|gb|EDO56571.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50]
          Length = 488

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 21/157 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  L   + D E+   N+L+VGPTG GK
Sbjct: 130 APHKIKAMLDEYVIGQEYAKKVMSVAVYNHYKRV-LTDSMDDIEIEKSNMLMVGPTGCGK 188

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T I + +A+L   P    + T  TE GY+G +VE ++  L+  A N V ++ +     DE
Sbjct: 189 TYIVKTIAKLLNVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAEKGIVFIDE 248

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           + +              + K   SN+R+V  + ++ G
Sbjct: 249 IDK--------------IAKKQNSNSRDVSGESVQQG 271



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GIVF+DE DKI  + + N   VS E VQ+ LL ++EG+ +    GS           +NT
Sbjct: 242 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKILEGAEIEVPVGSGSKNAMVPMTTMNT 301

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 302 KNILFICGGAFPAIEDIIKARLNKQSSIGFRADLKDKYDKDPNILKQVTNEDLREFGMIP 361

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L +L+K  +  IL + ++ ++ QYK+L+  + + L F + + +A+A+ A
Sbjct: 362 EFLGRLPVLFTLDALDKDMYIKILKEPKNAILKQYKKLLALDEVDLQFDDSAYEAIAEKA 421

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +  N+     GAR L+ ++E  + DI +    D     V+I  +YV
Sbjct: 422 MKKNT-----GARALRAIIEEFMLDIMYQIPRDDSIGRVIITGDYV 462


>gi|58699474|ref|ZP_00374209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534008|gb|EAL58272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 425

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  +
Sbjct: 182 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  H  +P DL+    
Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+  D   +LT+  + LI QYK L+    + L+F++++I A+A 
Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
            A++  +     GAR L+ ++E +L DI +++ +   +  T+VI  + V L
Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGSFEGSTIVITKKMVEL 407



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A  ++V+  R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181


>gi|34762746|ref|ZP_00143735.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887596|gb|EAA24676.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 258

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS 282
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG+
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGT 228


>gi|328676004|gb|AEB28679.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella
           cf. novicida 3523]
          Length = 417

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ +AK+ +++A+ N ++R       D   EL   N+LL+GPTG GK
Sbjct: 59  PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNPTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T +ILFI  GAF               +   AD                          
Sbjct: 232 DTTNILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTDKLMQKIESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+ +   +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDDVSIEFTDQAFVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   S+ D+ EK ++ D
Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSEDI-EKVIIND 392


>gi|238853432|ref|ZP_04643811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 202-4]
 gi|238834004|gb|EEQ26262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 202-4]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FTE ++ A+AD+
Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++ +     +GAR L++++E  L D+ +
Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380


>gi|238651008|ref|YP_002916864.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
 gi|259491268|sp|C4K2L5|CLPX_RICPU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238625106|gb|ACR47812.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
          Length = 425

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT +++ LA++   PF   + T  TE GYVG +VE I +R L+    NI +  +
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S             +  +
Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235

Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312
           +T +ILFI  GAF            H S                               L
Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNMDKEKNNSEILKSLEIEDLTKFGL 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+K     ILT  ++ ++ QY++  + +   L   + +++ +A+
Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALETIAE 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E +L D  +  ++L+ + V I  E V
Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKRQRVTITKEVV 397


>gi|116629801|ref|YP_814973.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|311110558|ref|ZP_07711955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri MV-22]
 gi|122273261|sp|Q042T7|CLPX_LACGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116095383|gb|ABJ60535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           gasseri ATCC 33323]
 gi|311065712|gb|EFQ46052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri MV-22]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FTE ++ A+AD+
Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++ +     +GAR L++++E  L D+ +
Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380


>gi|58696872|ref|ZP_00372387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630254|ref|YP_002727045.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp.
           wRi]
 gi|225677383|ref|ZP_03788352.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|58536915|gb|EAL60095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225590573|gb|EEH11831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225592235|gb|ACN95254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp.
           wRi]
          Length = 425

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 59/231 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  +
Sbjct: 182 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                  H  +P DL+    
Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L  L+  D   +LT+  + LI QYK L+    + L+F++++I A+A 
Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
            A++  +     GAR L+ ++E +L DI +++ +   +  T+VI  + V L
Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVITKKMVEL 407



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A  ++V+  R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181


>gi|302669568|ref|YP_003829528.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394041|gb|ADL32946.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio
           proteoclasticus B316]
          Length = 502

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           +P +I ++LD Y+IGQ  AK+ +++A+ N ++R  +  D  DE+     NILL+GPTG G
Sbjct: 140 APHKIKAKLDEYVIGQDQAKKVMSVAVYNHYKR--VATDTMDEIEIEKSNILLLGPTGSG 197

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 198 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKTEH 251



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 55/209 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + +     VS E VQ+ +L L+EGS+V    G           ++N
Sbjct: 251 HGIIFIDEIDKIAKKKNTTSRDVSGESVQQGMLKLLEGSNVEVPVGAGSKNAMVPLATVN 310

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 311 TRNILFICGGAFPDLEDIITQRLNKQTSIGFDADLKDKYEDDPNILSKVTVDDLKKFGMI 370

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L K     IL + ++ ++ QY++L+  + + L F + +++A+A+ 
Sbjct: 371 PEFLGRLPIICSLQALTKDMLVKILKEPKNAILKQYQKLLALDEVDLLFDDTALEAIAEK 430

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+       D GAR L+ ++E  + DI +
Sbjct: 431 ALE-----KDTGARALRAIIEEFMLDIMY 454


>gi|323485619|ref|ZP_08090959.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum
           WAL-14163]
 gi|323401058|gb|EGA93416.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum
           WAL-14163]
          Length = 488

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
           +P  I S LD Y+IGQ+ AK+ +++A+ N ++R  L    +DE       +   NIL++G
Sbjct: 137 APHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKVQIEKSNILMIG 196

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 197 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 255



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + +     VS E VQ++LL L+EGS V    GS           ++
Sbjct: 255 HGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVD 314

Query: 293 TDHILFIASGAF--------------------------HVSRPA-------------DLL 313
           T+HILFI  GAF                          + S P               ++
Sbjct: 315 TNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESDPDILTKVTTEDLRTFGMI 374

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+ V L++L K     +L + ++ ++ QY +L++ + + L F +++++ +A+ 
Sbjct: 375 PEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLELDEVKLVFEDEALEWIAEE 434

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+       + GAR L+ ++E  + DI +    D    +VVI   Y+
Sbjct: 435 AIK-----KETGARALRAIIEEFMLDIMYEIPKDSNIGSVVITRAYL 476


>gi|298529125|ref|ZP_07016528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510561|gb|EFI34464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 417

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P E+   LD Y++GQ+  K+ +A+A+ N ++R +     +D  EL   NILL+GPTG 
Sbjct: 63  LPPSELKKALDDYVVGQEKTKKLLAVAVYNHYKRVRYIKKQKDDVELDKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 GKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLMQNA 168



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 57/216 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYVDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFIA GAF                                   ++ PADL+    
Sbjct: 238 DTSNILFIAGGAFIGMDKIVRERVQKGSMGFGAELGSQFGATPNELISMAHPADLIKYGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L + D   ILT+ ++ L+ QY+++ + + I L FT++++ A+A 
Sbjct: 298 IPEFVGRIPVVSSLEELTEDDLVRILTEPKNALVKQYQKMFELDDINLKFTQNALRAIAA 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+   +     GAR L+ VME ++ D+ ++   LQ
Sbjct: 358 KALERKT-----GARGLRNVMESIMMDVMYNLPSLQ 388


>gi|313619225|gb|EFR90986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           innocua FSL S4-378]
          Length = 362

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG GK
Sbjct: 7   PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 67  TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 110



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 120 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 179

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 180 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 239

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   ++  +A  A
Sbjct: 240 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 299

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 300 IERKT-----GARGLRSIIEQIMLEVMF 322


>gi|42518937|ref|NP_964867.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           NCC 533]
 gi|61211574|sp|Q74JU4|CLPX_LACJO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41583224|gb|AAS08833.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii NCC 533]
          Length = 421

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 64  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FT+ ++ A+AD+
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           A++       +GAR L++++E  L D+ + + SD   K V I  + +  H
Sbjct: 357 AISRR-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 401


>gi|317508502|ref|ZP_07966169.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253193|gb|EFV12596.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 426

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RD-----ELMPKNILLVGPT 62
           P EI   L+ Y++GQ  AKR +A+A+ N ++R Q    L RD     EL   NIL++GPT
Sbjct: 64  PAEIREFLEGYVVGQDPAKRTLAVAVYNHYKRIQAGDKLGRDGKGGVELAKSNILMLGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI +GAF          V R                         P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGERVGRRGLGFGAQIRTREDVETRDYFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     ILT+ ++ L+ QY+ L + + + L+F +++++A+AD
Sbjct: 301 IPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFNKEAVEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +   S  D+ +  VVI  E VR ++
Sbjct: 361 QAL-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVITEETVRENV 407


>gi|256028616|ref|ZP_05442450.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           D11]
 gi|289766534|ref|ZP_06525912.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
 gi|289718089|gb|EFD82101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
          Length = 424

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S ++++E T+  D 
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411


>gi|134097948|ref|YP_001103609.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009142|ref|ZP_06567115.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910571|emb|CAM00684.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 427

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDE---LMPKNILLVGP 61
           P EI   LD+Y+IGQ  AKR +++A+ N ++R Q+      + R+E   L   NIL++GP
Sbjct: 64  PAEIHEFLDQYVIGQDPAKRNLSVAVYNHYKRIQVGERTTRESREESVELAKSNILMLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313
           +T ++LFI +GAF                                H +   P DL+    
Sbjct: 242 DTTNVLFIVAGAFAGLEKIVEDRVGKHSVGFGAELRSKTDLDNADHFADVMPEDLIKYGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P    + +L+K     ILT+  + LI QYK L + + + L+FT+ +++A+AD
Sbjct: 302 IPEFIGRLPTVATVTNLDKPSLVQILTEPRNALIKQYKRLFEMDNVELEFTKTALEAIAD 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ ++E VL  + +   S SD+ +  VVI  + VR ++
Sbjct: 362 QAI-LRGT----GARGLRAILEEVLLPVMYDIPSRSDVAK--VVITEQTVRENV 408


>gi|322515315|ref|ZP_08068312.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118691|gb|EFX90903.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 419

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 66  TPHEIHAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKLVEARTNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVRF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L  L++     ILT+ ++ +I QY+ L + EG+ L FT+D++ A+
Sbjct: 303 GLIPELIGRLPVVTPLPELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKDALIAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412
           A+ +++  +     GAR L++++E +L D  ++   L+ EK V
Sbjct: 363 AEKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400


>gi|260495116|ref|ZP_05815245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
 gi|260197559|gb|EEW95077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
          Length = 424

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSIGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S ++++E T+  D 
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411


>gi|253581497|ref|ZP_04858722.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
 gi|251836567|gb|EES65102.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
          Length = 416

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDELMPKNILLVGP 61
            +P+EI  +LD Y+IGQ + K+ +++A+ N ++R          D   EL   N+LL+GP
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILNKNNYGEEDNNVELQKSNVLLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 170



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 180 GIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKHPNQELIEI 239

Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312
           +T +ILFI  GAF        SR                            P DL     
Sbjct: 240 DTANILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETEEKVGEVFVKVLPEDLVRQGI 299

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   LK L++     ILT+ ++ ++ QYK+L   EG+ L+FT +++  +A 
Sbjct: 300 IPELVGRLPVITTLKDLDEEALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAV 359

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+        IGAR L+ ++E+ + ++ +
Sbjct: 360 LALERK-----IGARGLRAIIEQTMLELMY 384


>gi|167750808|ref|ZP_02422935.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702]
 gi|167656243|gb|EDS00373.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702]
          Length = 395

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  + G          
Sbjct: 141 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 200

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           INT +ILFI  GAF                                  H   P DL    
Sbjct: 201 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 260

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+ T+D++ A+A
Sbjct: 261 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIA 320

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
             A    +     GAR L+TV+E  L DI F+A SD     V++  E V
Sbjct: 321 KKAAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECV 364



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64
           P E+   LD+YIIGQ +AK+ + +++ N +++     +  AD   EL   N+LL+GPTGV
Sbjct: 28  PTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 86

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A
Sbjct: 87  GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 132


>gi|149923965|ref|ZP_01912351.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
 gi|149815197|gb|EDM74746.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
          Length = 416

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P++I   LD Y++GQ+ AK+ +++A+ N ++R  +  +    EL   NILL+GPTG GKT
Sbjct: 65  PKDIRVILDDYVVGQERAKKIISVAVYNHYKRINVKNSGDEPELQKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  A + V +++R
Sbjct: 125 LLAQTLARILDVPFAIADATSLTEAGYVGEDVENIIVSLLQNADHDVEKAQR 176



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  K G          +
Sbjct: 177 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTIASVPPKGGRKHPQQDFLQV 236

Query: 292 NTDHILFIASGAF---------HVS----------------RPADLL------------- 313
           +T +ILFI  GAF          VS                R  DLL             
Sbjct: 237 DTTNILFICGGAFAGMEDIIESRVSAKTMGFGATLQEKKEKRHWDLLQKVQSEDLMKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   LK L++     ILT+ ++ L+ QYK L++ +G+ L F ED++ A+A 
Sbjct: 297 IPEFIGRMPVVAPLKELDEEALVSILTEPKNALVKQYKRLLRMDGVELTFAEDALHAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A    +     GAR L++++ER + D+ +
Sbjct: 357 TAKEQRA-----GARGLRSILERAMLDVMY 381


>gi|303248989|ref|ZP_07335235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
 gi|302489638|gb|EFL49576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
          Length = 417

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    + PADL+    
Sbjct: 238 NTANILFIVGGAFIGLEKIVGQRMRGTAMGFGAKVEARHDDDMSRMLSQAHPADLIKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L K D   ILT+ ++ L+ QY++L + + + L FT++++DA+A+
Sbjct: 298 IPEFIGRIPILTSLEELTKDDLVRILTEPKNALVKQYQKLFELDKVRLRFTKNAMDAIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ VME ++ +I +    L
Sbjct: 358 KAIERKT-----GARGLRNVMESIMLEIMYKLPSL 387



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R            E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAAADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168


>gi|307261755|ref|ZP_07543421.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868573|gb|EFN00384.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 419

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT++++ A+
Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412
           A  +++  +     GAR L++++E +L D  ++   L+ EK V
Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400


>gi|255505533|ref|ZP_05346675.3| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
 gi|255267439|gb|EET60644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
          Length = 498

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 67/112 (59%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I ++LD Y+IGQ+ AK+ +++ + N ++R         E+   N+L++GPTG GKT
Sbjct: 148 APHKIKAKLDEYVIGQEYAKKVISVGVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKT 207

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R
Sbjct: 208 YLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKAER 259



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + +     VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 260 GIIFIDEIDKIAKKQNATQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLETVNT 319

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 320 RNILFICGGAFPGLEDIIKERLNKQASIGFQADLRDKYDSDPHILEKVTNEDIRKFGMIP 379

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   ++ L K     IL + ++ +I QY++L+  + + L+F +D+++A+A+ A
Sbjct: 380 EFIGRLPIVFTMQGLTKEMMVRILKEPKNAIIKQYQKLLALDEVQLEFEDDALEAIAERA 439

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L+ ++E ++ DI +
Sbjct: 440 LEKKT-----GARALRAIIEEIMLDIMY 462


>gi|323691694|ref|ZP_08105955.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673]
 gi|323504238|gb|EGB20039.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673]
          Length = 473

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
           +P  I S LD Y+IGQ+ AK+ +++A+ N ++R  L    +DE       +   NIL++G
Sbjct: 122 APHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKIQIEKSNILMIG 181

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 182 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 240



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + +     VS E VQ++LL L+EGS V    GS           ++
Sbjct: 240 HGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVD 299

Query: 293 TDHILFIASGAF--------------------------HVSRP-------------ADLL 313
           T+HILFI  GAF                          + S P               ++
Sbjct: 300 TNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESDPDILTKVTTEDLRTFGMI 359

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+ V L++L K     +L + ++ ++ QY +L++ + + L F +++++ +A+ 
Sbjct: 360 PEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLELDEVKLVFEDEALEWIAEE 419

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+       + GAR L+ ++E  + DI +    D    +VVI   Y+
Sbjct: 420 AIK-----KETGARALRAIIEEFMLDIMYEIPKDSNIGSVVITRAYL 461


>gi|237743261|ref|ZP_04573742.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
 gi|229433040|gb|EEO43252.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
          Length = 424

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S ++++E T+  D 
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411


>gi|32035049|ref|ZP_00135115.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208745|ref|YP_001053970.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae L20]
 gi|190150598|ref|YP_001969123.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250640|ref|ZP_07336837.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252092|ref|ZP_07338261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246196|ref|ZP_07528277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248302|ref|ZP_07530327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252912|ref|ZP_07534800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255176|ref|ZP_07536994.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257344|ref|ZP_07539114.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259614|ref|ZP_07541338.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263942|ref|ZP_07545545.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097537|gb|ABN74365.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915729|gb|ACE61981.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649074|gb|EFL79261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650628|gb|EFL80787.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852805|gb|EFM85029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855172|gb|EFM87350.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859550|gb|EFM91575.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862049|gb|EFM94025.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864194|gb|EFM96107.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866259|gb|EFM98123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870704|gb|EFN02445.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 419

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT++++ A+
Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412
           A  +++  +     GAR L++++E +L D  ++   L+ EK V
Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400


>gi|307250530|ref|ZP_07532474.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857423|gb|EFM89535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 419

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
            T  ILFI  GAF                                        P DL   
Sbjct: 243 YTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT+D++ A+
Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKDALIAI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412
           A  +++  +     GAR L++++E +L D  ++   L+ EK V
Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400


>gi|153813203|ref|ZP_01965871.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174]
 gi|149830734|gb|EDM85825.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174]
          Length = 476

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  +  D  DE+     N+L++GPTG G
Sbjct: 122 APHKIKATLDEYVIGQEYAKKVMSVAVYNHYKR--VATDTMDEIAIEKSNMLMIGPTGCG 179

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 180 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEH 233



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EG+ V    G           ++N
Sbjct: 233 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGADVEVPIGANSKNAMVPLTTVN 292

Query: 293 TDHILFIASGAF-------------------------------HV--------SRPADLL 313
           T +ILFI  GAF                               H+         R   ++
Sbjct: 293 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPHILEKVTVEDLRSFGMI 352

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   +  L +     IL++  + ++ QY++L+  + + L+F E ++ A+A  
Sbjct: 353 PEFIGRLPIIFTMNGLTEDMMVQILSEPRNAILKQYQKLLALDEVKLEFEEGALHAIAAK 412

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A+  ++     GAR L+ ++E  + DI +    D     V I  EY+ 
Sbjct: 413 AMEKHT-----GARALRAILEEYMLDIMYEIPKDDNIGQVTITREYIE 455


>gi|292669385|ref|ZP_06602811.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
 gi|292649020|gb|EFF66992.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
          Length = 430

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290
           +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G         
Sbjct: 189 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 247

Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311
             ++T +ILFI  GAF                                     H   P D
Sbjct: 248 IKVDTKNILFIVGGAFVGIEKVISKRLKKGNVSIGFGAEVRGKDIEKEFDTLIHQVTPED 307

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ L FTED+
Sbjct: 308 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDGVELVFTEDA 367

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A+   +     GAR L+ ++E V+ D+ F
Sbjct: 368 LRAVAKKAIERKT-----GARSLKGIIEEVMLDVMF 398



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P  I   LD YII Q  AK+ +A+A+ N ++R +          E+   N++++GP+G G
Sbjct: 76  PHLIKEYLDSYIIKQDRAKKILAVAVYNHYKRMKYGYEKEGEETEIEKSNVIMLGPSGCG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 136 KTALLSHLSKLLDVPFTVTDASSLTEAGFVGADVEVAVRNLYYAA 180


>gi|291557794|emb|CBL34911.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           siraeum V10Sc8a]
          Length = 430

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 235

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           INT +ILFI  GAF                                  H   P DL    
Sbjct: 236 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+ T+D++ A+A
Sbjct: 296 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
             A    +     GAR L+TV+E  L DI F+A SD     V++  E V
Sbjct: 356 KKAAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECV 399



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64
           P E+   LD+YIIGQ +AK+ + +++ N +++     +  AD   EL   N+LL+GPTGV
Sbjct: 63  PTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A
Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 167


>gi|215769357|dbj|BAH01586.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218190998|gb|EEC73425.1| hypothetical protein OsI_07697 [Oryza sativa Indica Group]
          Length = 645

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R       +   ADL             
Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAV 350

Query: 110 A 110
           A
Sbjct: 351 A 351



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 361 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 420

Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311
           +T  ILFI  GA                  F     A+                      
Sbjct: 421 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLLESVESG 480

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +L + ++ L  Q+K+L     + L FT+ 
Sbjct: 481 DLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDA 540

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A++ N+     GAR L+T++E +L D  +   D +     IDA
Sbjct: 541 ALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 586


>gi|293376038|ref|ZP_06622291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sanguinis PC909]
 gi|325844603|ref|ZP_08168246.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sp. HGF1]
 gi|292645339|gb|EFF63396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sanguinis PC909]
 gi|325489028|gb|EGC91415.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sp. HGF1]
          Length = 408

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   L+ Y+IGQ+D K+ +A+A+ N ++R     D  D  E+   NILL+G TG GK
Sbjct: 59  PKEIFDLLNEYVIGQEDVKKVLAVAVYNHYKRLTSNQDDSDGVEISKSNILLLGSTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 119 TLLAQTLAKVLDVPFAIADATSLTEAGYVGEDVENILLRLLQAADFNVEKAQR 171



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 58/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  R     I   VS EGVQ+ LL ++EGS  +            ++  I
Sbjct: 172 GIIYIDEIDKIARRSDNPSITRDVSGEGVQQALLKILEGSVANVPPQGGRKHPNQEFIQI 231

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILF+A GAF                                  H+ +P DLL    
Sbjct: 232 DTTNILFMAGGAFAGIEEVVKRRIGKKVIGFGADSKANNLTKKEIYAHI-QPDDLLKFGL 290

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GRFP+   L  L   D   ILT+ ++ L  QY+++ K + + L F E +I A+A+
Sbjct: 291 IPEFIGRFPIIGALNPLEVEDLIRILTEPKNALTKQYEKIFKMDNVELVFDEGAITAIAE 350

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L++++E ++ D+ F
Sbjct: 351 KAVERKT-----GARGLRSIIESIMTDVMF 375


>gi|225019944|ref|ZP_03709136.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum
           DSM 5476]
 gi|224947308|gb|EEG28517.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum
           DSM 5476]
          Length = 425

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           TF   P EI   LD Y+IGQ  AK A+++A+ N ++R         EL   N+LL+GPTG
Sbjct: 73  TF-LKPVEIKKVLDEYVIGQDAAKVALSVAVYNHYKRIFAAQQEGVELQKSNVLLLGPTG 131

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGKT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 132 VGKTLLAQTLAKILEVPFAIADATTLTEAGYVGEDVENVLLRLIQAA 178



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 59/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 188 GIIYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGTVSNVPPQGGRKHPNQDFIQI 247

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                   H+  P DL    
Sbjct: 248 DTKNILFICGGAFEGIEKVINRRMDTSAMGFGAPLKEKKDTTLAQAIKHI-EPHDLVRFG 306

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PEI GR PV   L  L++     IL + ++ L+ QY+ L + +G  L+FT+D++ A+A
Sbjct: 307 MIPEIVGRIPVITALDDLDEDSLVKILREPKNALLKQYQYLFELDGTTLEFTDDALRAVA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+ ++E VL D+ F     +   VVI  E V
Sbjct: 367 QMAIARKT-----GARGLRGILEGVLNDLMFRLPSEKATRVVITKEAV 409


>gi|38606907|gb|AAR25446.1| Clp protease [Lactobacillus johnsonii]
          Length = 395

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GK
Sbjct: 38  PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 97

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 98  TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 141



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 151 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 210

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 211 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 270

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FT+ ++ A+AD+
Sbjct: 271 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 330

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422
           A++       +GAR L++++E  L D+ + + SD   K V I  + +  H
Sbjct: 331 AISRR-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 375


>gi|224418551|ref|ZP_03656557.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           canadensis MIT 98-5491]
 gi|253826897|ref|ZP_04869782.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313142079|ref|ZP_07804272.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|253510303|gb|EES88962.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313131110|gb|EFR48727.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           canadensis MIT 98-5491]
          Length = 412

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R  Q P +   E+   NILL+GPTG GKT
Sbjct: 62  PKELKAILDDYVIGQEKAKKVFSVAVYNHYKRILQNPKEDETEISKSNILLIGPTGSGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V ++++
Sbjct: 122 LMAQTLAKALNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGDVTKAQK 173



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+F+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 174 GIIFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 233

Query: 292 NTDHILFIASGAF------------------HVSRPAD-------------------LLP 314
           NT  ILFI  GAF                  H ++ A                    L+P
Sbjct: 234 NTKDILFICGGAFDGLNEIIERRIGGNVLGFHHTKNAKTESKNLLDEVEPDDLVSFGLIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  + K     IL   ++ L  QY++L + + +IL F  ++++A+A++A
Sbjct: 294 ELIGRLHMIATLDEITKEAMITILQKPKNALTKQYQKLFELDDVILTFKPEALEAIAELA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME ++ DI +   +L+   V+I  E V
Sbjct: 354 IQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEVIITQESV 393


>gi|42525081|ref|NP_970461.1| ATP-dependent protease ATP-binding subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|61211515|sp|Q6MH12|CLPX_BDEBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39577292|emb|CAE81115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bdellovibrio
           bacteriovorus HD100]
          Length = 431

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 9/117 (7%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMP 53
           +K TF    P +I + LD Y+IGQ  AK+ +A+A+ N ++R       +  AD+  E+  
Sbjct: 55  VKGTFKVPKPSDIKTYLDDYVIGQTQAKKTLAVAVHNHYKRVNAMSGGKKSADV--EMQK 112

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ +A++   PF   + T  TE GYVG +VE ++ +L+  +
Sbjct: 113 SNILLIGPTGSGKTLLAQTIAKVLNVPFAMADATTLTEAGYVGEDVENVVLNLLQAS 169



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           G++++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 179 GVIYVDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANLPPKGGRKHPQQEFIQV 238

Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313
           +T +ILFI  GAF                           V + A+LL            
Sbjct: 239 DTTNILFIVGGAFVGLDKIIEQRTTNKTMGIAADIRTSEEVEKSANLLSKVEPDDLSKFG 298

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P    L  L++     IL   ++ +  QY++L   EG+ L FTE ++ A+A
Sbjct: 299 LIPEFIGRLPAIAVLAPLDEEALLDILVRPKNAITKQYQKLFSFEGVELKFTEKALRAVA 358

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
            +A+   +     GAR L+ V+E  + D+ +   S    K VVID
Sbjct: 359 QMALKRKT-----GARGLRGVLETAMLDVMYDIPSKNNVKEVVID 398


>gi|165924017|ref|ZP_02219849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 334]
 gi|165916540|gb|EDR35144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 334]
          Length = 422

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EI  +LD Y+IGQ+ AK+ +++A+ N ++R   Q   D   E+   NILL+GPTG G
Sbjct: 62  TPPEIHRKLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LA++   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL L+EG+  S            +Y  +
Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFI  GAF                                      + P DL+  
Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + EG+ +DF ED++ A+
Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416
           A  A+   +     GAR L++++E  L D+ +    +    + VVID+
Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397


>gi|291542674|emb|CBL15784.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           bromii L2-63]
          Length = 446

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ  AK  +++A+ N ++R     D   +    N+LL+GPTGVGK
Sbjct: 75  LKPKEIKTILDEYVIGQDHAKVTLSVAVYNHYKRA-FSNDESVDFAKSNVLLLGPTGVGK 133

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 134 TLLAQTLAKALDVPFAIADATTLTEAGYVGEDVENILLKLIQAA 177



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 57/213 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGS 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+               +Y  
Sbjct: 186 HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPQQEYLQ 245

Query: 291 INTDHILFIASGAF---------------------------------------HVSRPAD 311
           I+T +ILFI  GAF                                       H      
Sbjct: 246 IDTKNILFICGGAFDGLEKIVEKRKGSSVIGFESLVQSKQELDSTDWMKEVTAHDLVKYG 305

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR PV   L  L+      ILT  +++++ QYK+L + +G+ L F E+++ A+A
Sbjct: 306 IIPELIGRLPVITALSGLDTDALVKILTVPKNSIVQQYKKLFELDGVELLFEEEALRAIA 365

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
             A + ++     GAR L+ +ME +L D+ F A
Sbjct: 366 QQAQDQHT-----GARGLRGIMEDILTDLMFEA 393


>gi|288870678|ref|ZP_06114933.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
 gi|288866331|gb|EFC98629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
          Length = 498

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  + + N   VS E VQ++LL L+EGS+V    GS           ++T
Sbjct: 264 GIIFIDEIDKIAKKKNTNSRDVSGESVQQELLKLLEGSNVEVPVGSNQKNALTPMTTVST 323

Query: 294 DHILFIASGAF-------------------------HVSRPADLL--------------P 314
           D+ILFI  GAF                            +  D+L              P
Sbjct: 324 DNILFICGGAFPDLEDIIKERLTNKSSIGFAAELKDKYDKDPDILGRVTNEDLRKFGMIP 383

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ V L+SL K     IL +  + ++ QY++L++ + + L F +D+++ +A+ A
Sbjct: 384 EFLGRLPITVTLQSLTKELLVRILKEPRNAILKQYEKLLELDEVKLVFEDDALEWIAEQA 443

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       + GAR L++++E  + DI +    D +  +VVI   Y+
Sbjct: 444 MK-----KETGARALRSIIEDFMLDIMYEIPKDPEIGSVVITRAYL 484



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDE----LMPKNILLVGPT 62
           +P  I   LD Y+IGQ+ AK+ +++A+ N ++R  L  +D ++E    +   NIL++GPT
Sbjct: 147 APHIIKQRLDEYVIGQEQAKKVISVAVYNHYKRVFLVDSDKKEEENVQIEKSNILMIGPT 206

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  ++R
Sbjct: 207 GSGKTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVDRAQR 263


>gi|33519712|ref|NP_878544.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
 gi|46576472|sp|Q7VRH0|CLPX_BLOFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33504057|emb|CAD83318.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
          Length = 426

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+               ++  +
Sbjct: 189 GIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTVAFIPPKGGRKHPQQEFIQV 248

Query: 292 NTDHILFIASGAF-------------------HVS-----------------RPADLL-- 313
           +T +ILFI  G+F                   H S                  P DL+  
Sbjct: 249 DTTNILFICGGSFSGLNKIVEERISDNHAIGFHASLKDNNRENLKYSLLNKVEPEDLIKF 308

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GRFPV   L  L +S+   IL + ++ LI QY++L  T+ + L+F E ++ A+
Sbjct: 309 GLIPEFVGRFPVISILNELKESELVAILKEPKNALIKQYQKLFYTDKVKLEFAESALSAI 368

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           A  A+   S+    GAR L+T++E +L D+ +   +  + T VVI+++ V
Sbjct: 369 AKCAMATKSS----GARGLRTILENILLDMMYDLPNQNKVTKVVINSDVV 414



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 13/111 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRDELMPKNI 56
           +P +I   L  Y++GQ+  K+ +A+A+ N ++R             L  D+  EL   NI
Sbjct: 68  TPHDINQYLSTYVVGQEYVKKTLAVAVYNHYKRLRYQVMNINNNSNLYQDV--ELSKSNI 125

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE +I+ L+
Sbjct: 126 LLIGPTGSGKTLLAQTLARFLDIPFSISDATTLTEAGYVGEDVENVIQKLL 176


>gi|319778292|ref|YP_004129205.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
 gi|317108316|gb|ADU91062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
          Length = 409

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD+Y+IGQ+  K+ +++A+ N ++R +   +  +  EL   NILL+GPTG G
Sbjct: 64  TPSEIKEFLDKYVIGQEGPKKQLSVAVYNHYKRIRHAGEKSNDVELSKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ +A+    PF   + T  TE GYVG +VE II+ L+
Sbjct: 124 KTLLAQTIAKQLDVPFAMADATTLTEAGYVGEDVEHIIQKLL 165



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 62/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
            I+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 178 AIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPGQEFIQV 237

Query: 292 NTDHILFIASGAFH--------------------VSR--------------PAD-----L 312
           +T +ILFI  GAF                     VS               P D     L
Sbjct: 238 DTTNILFIVGGAFEGLEKIIQNRTEKSGIGFNASVSHKTEKGVGELIAQVEPEDIIKFGL 297

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L+      ILT  ++ L+ QY+ L   EG+ L+ T +++  +A+
Sbjct: 298 IPELVGRLPVVTTLQELDVGALVQILTVPKNALVKQYQTLFAMEGVELEVTPEALKLIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
            A+   +     GAR L++++E VL  I F   S SD+  K V+++ E V
Sbjct: 358 KAIKRKT-----GARGLRSIIESVLMPIMFEMPSRSDI--KKVILNEEAV 400


>gi|161830841|ref|YP_001596949.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           RSA 331]
 gi|189044132|sp|A9NDF9|CLPX_COXBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161762708|gb|ABX78350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 331]
          Length = 422

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL L+EG+  S            +Y  +
Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFI  GAF                                      + P DL+  
Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + EG+ +DF ED+++A+
Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALNAI 354

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416
           A  A+   +     GAR L++++E  L D+ +    +    + VVID+
Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R   Q   D   E+   NILL+GPTG G
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LA++   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162


>gi|78186393|ref|YP_374436.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           luteolum DSM 273]
 gi|123730111|sp|Q3B5I8|CLPX_PELLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78166295|gb|ABB23393.1| ClpX, ATPase regulatory subunit [Chlorobium luteolum DSM 273]
          Length = 441

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGPT 62
           SP+ I+  L++Y++GQ+ AKR++A+A+ N ++R   Q+   D  DE++    NI+L+GPT
Sbjct: 84  SPKAILESLNQYVVGQERAKRSLAVAVYNHYKRIDSQEWRHD-DDEIVIEKSNIMLIGPT 142

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           G GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 143 GTGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 199



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 61/212 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+   V  K G         
Sbjct: 200 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 257

Query: 290 SINTDHILFIASGAF-----------------------------------HVSR----PA 310
           +INT +ILFI  GAF                                   HV++      
Sbjct: 258 NINTKNILFICGGAFEGLDRLIARRISKSSMGFGSSVTDKQSGYDPEILKHVTQDDLHEY 317

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+    R IL + ++ L+ QY +L + +G+ L+FT ++++ +
Sbjct: 318 GLIPEFIGRLPVLSTLDPLDADALRSILVEPKNALVKQYGKLFEMDGVELEFTPEALERV 377

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             +A+   +     GAR L++V+E V+ DI F
Sbjct: 378 VAIAIERGT-----GARALRSVLENVMIDIMF 404


>gi|294783779|ref|ZP_06749103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480657|gb|EFG28434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 1_1_41FAA]
          Length = 430

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 73  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 178



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 188 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 247

Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312
           +T +ILFI  GAF        SR                             P DL    
Sbjct: 248 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMAGAEGEFFKKVLPEDLVKQG 307

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE+++  +A
Sbjct: 308 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 367

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S + ++E T+  DA
Sbjct: 368 RRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDA 410


>gi|297583714|ref|YP_003699494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           selenitireducens MLS10]
 gi|297142171|gb|ADH98928.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           selenitireducens MLS10]
          Length = 423

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65
           P+EI   L+ Y+IGQ  AK+ +++A+ N ++R  + A +R+   EL   NI L+GPTG G
Sbjct: 64  PQEIREILNDYVIGQDRAKKTLSVAVYNHYKR--VNATVRNDDVELAKSNICLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313
           +T ++LFI  GAF                               ++S+  P DLL     
Sbjct: 236 DTTNVLFIVGGAFDGIDSIIKQRLGKKVIGFGAEADQEDLKEGEYLSKILPEDLLRYGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QY++L++ + + L+FTE ++  +A  
Sbjct: 296 PEFIGRIPVIASLEQLDEAALVEILTAPKNALVKQYQKLLELDEVELEFTEKALKEVATK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ +
Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMY 379


>gi|255658852|ref|ZP_05404261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
 gi|260849255|gb|EEX69262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
          Length = 433

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 66/238 (27%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290
           IQ  E +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EG+ V  T  G   
Sbjct: 188 IQKAE-HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGNVVEFTARGQRK 245

Query: 291 --------INTDHILFIASGAF-------------------------------------H 305
                   ++T +ILFI  GAF                                     H
Sbjct: 246 HPEAPTIKVDTKNILFIVGGAFVGIDDVIAKRLQKADSSIGFGAEVTSKSEKPTFDELIH 305

Query: 306 VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             RP DL+     PEI GR P+   L++L++     ILT+ ++  + QY++L+  + + L
Sbjct: 306 QVRPEDLMQYGIIPEIIGRLPIICTLETLDEDALLRILTEPKNAPVKQYEKLLAMDNVKL 365

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
           +F ED++ A+A  A+   +     GAR L+ ++E V+ D+ +    SD   K ++  A
Sbjct: 366 EFAEDALRAVAKKAIERKT-----GARSLKGIIEDVMLDVMYDIPKSDEPRKVIITKA 418



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P  I   LD YII Q  AK+ +++A+ N ++R +      D  E+   N++++GP+G GK
Sbjct: 81  PHIIKQYLDEYIINQDRAKKILSVAVYNHYKRMKYGYTNDDGTEIEKSNVIMLGPSGCGK 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TA+   L++L   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 141 TALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 184


>gi|8978260|dbj|BAA98151.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana]
          Length = 608

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R            +    D+ D      
Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF   + T  T+ GYVG +VE I+  L   
Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 318

Query: 110 AINIVRESRR 119
           A   V E++R
Sbjct: 319 AGCNVEEAQR 328



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 72/242 (29%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------- 289
           GIV++DE DK+   +  S  G  VS EGVQ+ LL L+EG+ VS                 
Sbjct: 329 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVSVPIPEKGLRRDPRGDSI 388

Query: 290 SINTDHILFIASGAF-----------------------------HVSRPA---------- 310
            ++T  ILFI  GAF                              +S  A          
Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448

Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P+ V L +LN+     +LT+ +S L  QYK+L +   + L FT
Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAE 417
           E +   +A  A++ N+     GAR L++++E +L +  F   D + E     K V++D E
Sbjct: 509 EGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEE 563

Query: 418 YV 419
            V
Sbjct: 564 AV 565


>gi|237742957|ref|ZP_04573438.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           4_1_13]
 gi|229430605|gb|EEO40817.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           4_1_13]
          Length = 423

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312
           +T +ILFI  GAF                     V +               P DL    
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+        +GAR L+ ++E  + DI F
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394


>gi|27904899|ref|NP_778025.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|31076631|sp|Q89AA0|CLPX_BUCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27904297|gb|AAO27130.1| putative ATP-dependent protease [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 428

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P EI   LD YIIGQ   K+ +++A+ N ++R       ++   EL   N+LL+GPTG 
Sbjct: 67  TPYEIFKHLDNYIIGQLHTKKVLSVAVYNHYKRLNHLNSKKNNNIELGKSNLLLIGPTGC 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT ++  LA+    PF   + T  TE GYVG +VE II+ L+
Sbjct: 127 GKTLLAETLAKFLDVPFSISDATTLTEAGYVGEDVENIIQRLL 169



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTLASVPMQGGRKHPQQEFLKV 241

Query: 292 NTDHILFIASGAF---------------------HVSR---------------PADLL-- 313
           +T  ILFI  GAF                      V++               P DL+  
Sbjct: 242 DTSKILFICGGAFLGLNKIIEKRTKLGTKIGFNAKVNKNLKICSKDALMQQVIPEDLIKF 301

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L+K     IL++ ++ LI QY+ L K E + L      I+ +
Sbjct: 302 GLIPEFIGRLPILTILHELDKKMLVKILSEPKNALIKQYQTLFKLEDVELKICTKVIEYI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+N N+     GAR L++++E +L D  +    +   KT++ID
Sbjct: 362 AQKAMNQNT-----GARGLRSIIEMLLLDTMYRLPSMTNIKTIIID 402


>gi|332703912|ref|ZP_08424000.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554061|gb|EGJ51105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 415

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTG 63
            +P+EI  +LD ++IGQ+ AK+ +++A+ N ++R    AD   E   +   NILL+GPTG
Sbjct: 61  LTPQEIKDQLDEHVIGQEQAKKVLSVAVHNHYKRVYY-ADTAGEDVEIDKSNILLLGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 CGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 166



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 176 GIVYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTDANIPPKGGRKHPQQEFIRL 235

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           NT +ILFI  GAF                                    + P DL     
Sbjct: 236 NTSNILFIMGGAFIGLDKIIQQRMRGGAMGFGAKVEGKRELSISELLRFAHPNDLVKFGM 295

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L + D   +LT+ ++ L+ QY++L + + + L FT +++  +A 
Sbjct: 296 IPEFVGRVPVVTSLIDLGEDDLVRVLTEPKNALVKQYQKLFELDKVRLRFTANALRGIAQ 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+ L  T    GAR L+ VME ++ +I F
Sbjct: 356 QAI-LRKT----GARGLRNVMESIMLEIMF 380


>gi|261494049|ref|ZP_05990552.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496190|ref|ZP_05992596.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308142|gb|EEY09439.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310215|gb|EEY11415.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 415

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 9/107 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R  L + L +       EL   NILL+G
Sbjct: 66  TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRSALSNHQTTNGVELGKSNILLIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 124 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +++ + G          +
Sbjct: 183 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGGRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFAAALKKDKDRQDLTELFKQVEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT+D++ ++
Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHFTKDALISI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A  A++  +     GAR L++++E +L D  +    L  K V I
Sbjct: 363 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTI 401


>gi|197301584|ref|ZP_03166657.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC
           29176]
 gi|197299314|gb|EDY33841.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC
           29176]
          Length = 490

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 9/151 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y++GQ+ AK+ +A+A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 138 APHKIKARLDEYVVGQERAKKTMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGSGKT 197

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N V      E  EQ  
Sbjct: 198 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQGI 251

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158
           I  +E  +D  + K  TS+ R+V  + ++ G
Sbjct: 252 IFIDE--IDK-IAKKKTSSQRDVSGESVQQG 279



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 250 GIIFIDEIDKIAKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 309

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
            +ILFI  GAF                                    V+    R   ++P
Sbjct: 310 KNILFICGGAFPDIEEIIKERLQKKTSMGFNSELKDTYEHDENLLSKVTVEDLRKFGMIP 369

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   LK L+K     IL + ++ ++ QY++L+  + + LDF + +++A+A+ A
Sbjct: 370 EFLGRLPIIFTLKGLDKEMLVKILREPKNAILKQYQKLLALDEVKLDFDDSALEAIAEKA 429

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +       D GAR L+ ++E  + DI +
Sbjct: 430 ME-----KDTGARALRAIIEEFMLDIMY 452


>gi|283457918|ref|YP_003362520.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa
           DY-18]
 gi|283133935|dbj|BAI64700.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa
           DY-18]
          Length = 455

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPK 54
           +PREI S L+ Y+IGQ  AKR +A+A+ N ++R                 A  + EL   
Sbjct: 71  TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT ++  LA+    PF  V+ T  TE GYVG +VE I+  L++ A   +
Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190

Query: 115 RESRR 119
            +++R
Sbjct: 191 AKAQR 195



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 59/220 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR  G  + ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 196 GIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTVATVPPEGGRKHPAHANI 254

Query: 290 SINTDHILFIASGAF------------------------HVSRPAD-----------LLP 314
            I+T +ILFI +GAF                         V  P D           ++P
Sbjct: 255 EIDTSNILFIVAGAFDNIDDRIAARVGAGGIGFGAELGGSVKNPLDQIMPEDLAHYGIIP 314

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  LN+ +   +LT+ ++ L+ QY+ L   +G+     E  ID  A  A
Sbjct: 315 ELIGRLPVISTLNELNEEELARVLTEPKNALLKQYRHLFALDGV-----ELIIDDAAIAA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +   +     GAR L+++ME++L+ I F   D+ ++T V+
Sbjct: 370 IARLAAERGTGARGLRSMMEQILQPIMF---DIPDRTDVV 406


>gi|301118793|ref|XP_002907124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
           infestans T30-4]
 gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
           infestans T30-4]
          Length = 692

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 61/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS  +V  K G         +I
Sbjct: 434 GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITI 493

Query: 292 NTDHILFIASGAF-----HVSR--------------------------------PADL-- 312
           +T +ILFI  GAF      V+R                                P DL  
Sbjct: 494 DTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQAEPEDLVS 553

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFP+ V    L+K +   +LT+ +++L+ QYK L     +    TE +++A
Sbjct: 554 YGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEA 613

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +A+ A+  N+     GAR L+++ ER L +  F   D+ + + V +D E +  H
Sbjct: 614 VAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGH 662



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N++LVGPTG GKT +++ LARLA  P +  + T  T+ GYVG +VE ++  L   
Sbjct: 364 ELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQA 423

Query: 110 A 110
           A
Sbjct: 424 A 424


>gi|294784270|ref|ZP_06749565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_27]
 gi|294488136|gb|EFG35487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_27]
          Length = 423

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312
           +T +ILFI  GAF                     V +               P DL    
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+        +GAR L+ ++E  + DI F
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394


>gi|240143620|ref|ZP_04742221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|257204367|gb|EEV02652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
          Length = 514

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  + +D +D  E+   N+L++GPTG G
Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EG+ V    G+           +N
Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332

Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313
           T +ILFI  GAF          +++ A                               ++
Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ A+A  
Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L+ ++E  + DI +    D     V I  EYV 
Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495


>gi|223042117|ref|ZP_03612289.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
 gi|223017094|gb|EEF15534.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
          Length = 414

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 182 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGSRKHPKGETIPV 241

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 242 DTSKILFICGGAFAGLDKIVEARTNKQGGIGFAAELKNDKERQDLTELFKQVEPEDLVRF 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L+++    ILT+ ++ +I QY+ L + EG+ L+FT+D++ A+
Sbjct: 302 GLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVELEFTQDALVAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A  A+     V   GAR L++++E +L D  +    L  K V I+   V
Sbjct: 362 AKKAI-----VRKTGARGLRSIVEGLLLDTMYDLPTLNAKKVTIEKACV 405



 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 9/107 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R  L + L +       EL   NILL+G
Sbjct: 65  TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKR--LKSALSNHEVTNGVELGKSNILLIG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 123 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169


>gi|171910144|ref|ZP_02925614.1| ATP-dependent protease ATP-binding subunit [Verrucomicrobium
           spinosum DSM 4136]
          Length = 423

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 12/114 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD---------ELMPKNI 56
           P +I++ LD ++IGQ  AK+ +++A+ N ++R    Q  AD +          E+   N+
Sbjct: 62  PADIMAALDHHVIGQAHAKKVLSVAVHNHYKRILSAQASADRKTAAIGEYNDVEIEKSNV 121

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LLVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 122 LLVGPTGCGKTLLAKTLARILNVPFSIADATTLTEAGYVGEDVENIILRLLQAA 175



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 185 GIIYVDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTVCNVPPQGGRKHPQQEYIQV 244

Query: 292 NTDHILFIASGAF---------------------HVSR------------PADLL----- 313
           NT++ILFI  GAF                      ++R            P DLL     
Sbjct: 245 NTENILFICGGAFVGLDQFMAKRRGRKVMGFGNEMLNREQQDADLTKDVQPEDLLGFGLI 304

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV V ++ L + +   +LT+ ++ LI QY +L+  +G+ L    D++ A+A  
Sbjct: 305 PEFIGRLPVVVAMQQLTEEELVRVLTEPKNALIKQYSKLLGMDGVDLQVNRDALIAMARE 364

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++ER++ D+ +
Sbjct: 365 ALKRGT-----GARGLRSILERIMLDVMY 388


>gi|254361749|ref|ZP_04977884.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
 gi|153093284|gb|EDN74280.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
          Length = 415

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 9/107 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R  L + L +       EL   NILL+G
Sbjct: 66  TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRSALSNHQATNGVELGKSNILLIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 124 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +++ + G          +
Sbjct: 183 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGGRKHPKGETIPV 242

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 243 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFAAALKKDKDRQDLTELFKQVEPEDLVKF 302

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT+D++ ++
Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHFTKDALISI 362

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           A  A++  +     GAR L++++E +L D  +    L  K V I
Sbjct: 363 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTI 401


>gi|291539195|emb|CBL12306.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis XB6B4]
          Length = 514

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  + +D +D  E+   N+L++GPTG G
Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EG+ V    G+           +N
Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332

Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313
           T +ILFI  GAF          +++ A                               ++
Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ A+A  
Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L+ ++E  + DI +    D     V I  EYV 
Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495


>gi|225621124|ref|YP_002722382.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225215944|gb|ACN84678.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 410

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64
             P++I S LD Y++GQ  AK+ +++++ N ++R  Q   D  D E+   N+LL+GPTG 
Sbjct: 64  LPPKQIKSLLDEYVVGQDYAKKVLSVSVYNHYKRITQNAEDKNDVEIEKSNVLLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 169



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 60/241 (24%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YGS---- 290
           I++ E  GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +   +G     
Sbjct: 173 IKLAEK-GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGGRKHP 231

Query: 291 ------INTDHILFIASGAF---------HVSRPA------------------------- 310
                 I+T +ILFI  GAF           S+                           
Sbjct: 232 HQDNLHIDTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMDNLNYDEIMKNIATE 291

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L + +   IL + ++ L  QY++L   + I L   +D
Sbjct: 292 DLVKYGLIPELIGRLPVIATLEELKEEELLKILKEPKNALTKQYQKLFSYDNIELKIDDD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVV-IDAEYVRLHI 423
           ++ ++    +  ++     GAR L+ + ERV+ D  +   ++ +EK V  +D +YV   +
Sbjct: 352 ALKSIVKKTMEEHT-----GARGLRALFERVMLDAMYDMPNESKEKQVFELDKKYVNEKL 406

Query: 424 G 424
           G
Sbjct: 407 G 407


>gi|21673243|ref|NP_661308.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS]
 gi|46576607|sp|Q8KFC3|CLPX_CHLTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21646329|gb|AAM71650.1| ATP-dependent Clp protease, ATP-binding subunit Clpx [Chlorobium
           tepidum TLS]
          Length = 439

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 66/232 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EGS   V  K G         
Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 255

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           +INT +ILFI  GAF          VS+ +                              
Sbjct: 256 NINTKNILFICGGAFEGLDKIIARRVSKSSMGFGSKVRGKQTGYDPEILKLVTQDDLHDY 315

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+    R IL + ++ L+ QYK L + +G+ L+FT+++++ +
Sbjct: 316 GLIPEFIGRLPVMSVLEPLDAVALRNILVEPKNALVKQYKRLFEMDGVELEFTDEALERV 375

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
             +A+   +     GAR L++V+E V+ DI F   +  D+Q+   VI AE +
Sbjct: 376 VAIAIERGT-----GARALRSVLENVMIDIMFELPTRKDVQK--CVITAETI 420



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELM--PKNILLVGPTGV 64
           SP  I   LD+Y+IGQ+ AK+++A+A+ N ++R         DE++    NILL+GPTG 
Sbjct: 83  SPVNIKEALDQYVIGQEQAKKSLAVAVYNHYKRLDAHDWSSGDEVVIEKSNILLIGPTGT 142

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +  N+ R  R
Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAER 197


>gi|46190461|ref|ZP_00121496.2| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Bifidobacterium longum DJO10A]
 gi|189439547|ref|YP_001954628.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum DJO10A]
 gi|189427982|gb|ACD98130.1| ATP-dependent Clp protease ATPase subunit [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
             PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVA 110
           E GYVG +VE +++ L+  A
Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%)

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
           ++A + TR   R        SD   D+EVA      SN  + G   VG   L++  ++VM
Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248
                           P ++ D +          D++TV +  +Q  +       +GI++
Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217

Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293
           +DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S                ++T
Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276

Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315
             ILFI  GAF                      H +   D                LLPE
Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A+AD+A+
Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              +     GAR L++++ER L+D  F    L + K V++D   V
Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436


>gi|291537251|emb|CBL10363.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis M50/1]
          Length = 517

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  + +D +D  E+   N+L++GPTG G
Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EG+ V    G+           +N
Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332

Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313
           T +ILFI  GAF          +++ A                               ++
Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ A+A  
Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L+ ++E  + DI +    D     V I  EYV 
Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495


>gi|213692574|ref|YP_002323160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524035|gb|ACJ52782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458726|dbj|BAJ69347.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 459

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGEQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
             PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVA 110
           E GYVG +VE +++ L+  A
Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%)

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
           ++A + TR   R        SD   D+EVA      SN  + G   VG   L++  ++VM
Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248
                           P ++ D +          D++TV +  +Q  +       +GI++
Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217

Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293
           +DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S                ++T
Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276

Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315
             ILFI  GAF                      H +   D                LLPE
Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A+AD+A+
Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              +     GAR L++++ER L+D  F    L + K V++D   V
Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436


>gi|313895439|ref|ZP_07828996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320530805|ref|ZP_08031845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
 gi|312976334|gb|EFR41792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320136964|gb|EFW28906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
          Length = 433

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290
           +GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G         
Sbjct: 192 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 250

Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311
             ++T +ILFI  GAF                                     H   P D
Sbjct: 251 IKVDTKNILFIVGGAFVGIEKIIAKRLRKNSAAIGFGAEVRGKETEKEFDTLIHQVSPED 310

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ L FTED+
Sbjct: 311 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDGVELVFTEDA 370

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A+   +     GAR L+ ++E V+ D+ F
Sbjct: 371 LRAVAKKAIARKT-----GARSLKGIIEEVMLDVMF 401



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL------RDELMPKNILLVGPT 62
           P  I   LD YII Q  AK+ +A+A+ N ++R +   +         E+   N++++GP+
Sbjct: 76  PHLIKDYLDTYIINQDHAKKILAVAVYNHYKRMKYGYEAAKEEQESTEIEKSNVIMLGPS 135

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 136 GCGKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 183


>gi|256846929|ref|ZP_05552383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_36A2]
 gi|256717727|gb|EEU31286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_36A2]
          Length = 423

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312
           +T +ILFI  GAF                     V +               P DL    
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L +L++ +   ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPIISTLDNLDEQNLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+        +GAR L+ ++E  + DI F
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394


>gi|223038749|ref|ZP_03609042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           rectus RM3267]
 gi|222880151|gb|EEF15239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           rectus RM3267]
          Length = 393

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGP 61
           N +P+E+ + LD Y+IGQ  AK+  ++ + N ++R     + P D   E+   NILLVGP
Sbjct: 42  NLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGETPDDT--EISKSNILLVGP 99

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 100 TGSGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 148



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 158 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 217

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILF+  GAF                      R  D                  L+P
Sbjct: 218 DTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDRENLLDALESDDLVHFGLIP 277

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + + D   ILT+ ++ ++ QY++L   +   L F ++++  +A +A
Sbjct: 278 ELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLFAIDRANLKFDDEALKEVARLA 337

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME ++ D+ +   +L    VVI  E V
Sbjct: 338 IERKT-----GARGLRSIMEEIMTDVMYELPELAGYDVVITKEVV 377


>gi|165976698|ref|YP_001652291.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876799|gb|ABY69847.1| ATP-dependent Clp protease, ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 378

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 25  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 78

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 79  LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 129



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 142 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 201

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 202 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 261

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L FT++++ A+
Sbjct: 262 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 321

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412
           A  +++  +     GAR L++++E +L D  ++   L+ EK V
Sbjct: 322 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 359


>gi|319651747|ref|ZP_08005873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           2_A_57_CT2]
 gi|317396566|gb|EFV77278.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           2_A_57_CT2]
          Length = 421

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+++++A+ N ++R    + + + EL   NI ++GPTG GKT
Sbjct: 64  PAEIRDILDEYVIGQDQAKKSLSVAVYNHYKRINSNSKIDEVELSKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 57/227 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAFH-----VSR-------------------PADLL-------------- 313
           +T +ILFI  GAF      + R                   P DLL              
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDQNQKEIEPKDLLAKVLPEDLLKFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L+++    ILT  ++ L+ QY+++++ + + LDF E +++ +A  
Sbjct: 296 PEFIGRLPVIASLSQLDEAALIEILTKPKNALVKQYQKMLELDDVELDFEEGALEEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+   +     GAR L++++E ++ D+ F     ++ K  +I  E V
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIKKCIITKETV 397


>gi|300865841|ref|ZP_07110587.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
 gi|300336165|emb|CBN55745.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
          Length = 460

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILL 58
             P EI   LD ++IGQ  AK+ +++A+ N ++R  +  D           EL   NILL
Sbjct: 88  LKPVEIKQHLDNHVIGQHSAKKVLSVAVYNHYKRLSVDRDKATKPTPDDAVELQKSNILL 147

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 148 VGPTGCGKTLLAQSLAQMLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 199



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 65/218 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  +
Sbjct: 209 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQL 268

Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309
           +T  ILFI  GAF                                            ++P
Sbjct: 269 DTSKILFICGGAFVGLEKIVEQRLGKKSLGFIQPQEAEGIANGIPAKDKRAADILQHAQP 328

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   +  L+++    ILT+ ++ L+ QY++L+K + + L+F  
Sbjct: 329 DDLVKFGLIPEFVGRMPVVTVISPLDEAALMEILTEPKNALVKQYQKLLKMDNVQLEFQG 388

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           D++ A+A  A    +     GAR L++++E ++ D+ +
Sbjct: 389 DALKAIAQEAYRRKT-----GARALRSILEELMLDVMY 421


>gi|237739237|ref|ZP_04569718.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
 gi|229422845|gb|EEO37892.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
          Length = 430

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 73  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 178



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 188 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 247

Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312
           +T +ILFI  GAF        SR                             P DL    
Sbjct: 248 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMAGAEGEFFKKVLPEDLVKQG 307

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE+++  +A
Sbjct: 308 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 367

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S + ++E T+  DA
Sbjct: 368 RRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDA 410


>gi|258404645|ref|YP_003197387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
 gi|257796872|gb|ACV67809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
          Length = 414

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   L+ Y++GQ  AK+ +A+A+ N ++R        D EL   NIL VGPTG G
Sbjct: 61  LPPAEIKEALNDYVVGQDMAKKVLAVAVHNHYKRVYYAGGSDDVELDKSNILFVGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLMAQTLARILNVPFAIADATNLTEAGYVGEDVENILVQLLQNA 165



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 175 GIIYIDEIDKVARKSDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 234

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                      P DLL    
Sbjct: 235 DTSNILFILGGAFVGLEDIIQQRLQGSSMGFGARLVGKKEMSIGDVLRQVHPEDLLKFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L++ D   ILT   + L+ QY++L + + + L FT +++ A+A 
Sbjct: 295 IPEFVGRIPVVATLDELSEDDLVHILTAPRNALVKQYQKLFELDEVHLRFTNNALKAIAT 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
            A+   +     GAR L+ VME ++ D+ +   S +D++E  V
Sbjct: 355 RALAQKT-----GARGLRNVMETIMLDLMYKLPSMTDVKECVV 392


>gi|254415617|ref|ZP_05029376.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177567|gb|EDX72572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
          Length = 468

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--------LMPKNILL 58
             P EI   LD+Y+IGQ  AK+ +++A+ N ++R  L  +  D         L   NILL
Sbjct: 103 LKPVEIKQVLDKYVIGQDQAKKVLSVAVYNHYKRLNLAQEDYDASGLDDSITLQKSNILL 162

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ +A
Sbjct: 163 IGPTGCGKTLLAQTLANLLQVPFAIADATTLTEAGYVGDDVENILLRLLQMA 214



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 60/221 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +   + +   VS EGVQ+ LL ++EG+ V+            ++  +
Sbjct: 224 GIVYIDEIDKITRKSEKSSMTRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQEFIQL 283

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFI  GAF                                    H+  P DL+  
Sbjct: 284 DTSNILFICGGAFVGLEQIIEQRLGKRSIGFIQPSETRSPQLSSAELSKHL-EPDDLIKF 342

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PEI GR PV   ++ L++     ILT   + L+ QY++L+  + + L+F  +++ A+
Sbjct: 343 GVIPEIIGRLPVITAVEPLDEDSLVAILTKPRNALVKQYQKLLNMDNVRLEFHPEALRAI 402

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           A  A    +     GAR L+ ++E V+ ++ +     Q+ T
Sbjct: 403 AQEAFRRKT-----GARALRGILEEVMLEVMYEIPSRQDIT 438


>gi|254431561|ref|ZP_05045264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp.
           PCC 7001]
 gi|197626014|gb|EDY38573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp.
           PCC 7001]
          Length = 453

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI + LDR ++GQ++AK+++++A+ N ++R     D + E       L   NILL+GP
Sbjct: 86  PQEIKAFLDRQVVGQEEAKKSLSVAVYNHYKRLAWQGDGKGETDETATRLHKSNILLIGP 145

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 146 TGCGKTLLAQTLAEILEVPFAVADATTLTEAGYVGEDVENILLRLLQKA 194



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 62/215 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG++  V  + G          I
Sbjct: 204 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTTANVPPQGGRKHPYQDCIQI 263

Query: 292 NTDHILFIASGAF----------------------HVSRP--------AD---------- 311
           +T  ILFI  GAF                        +RP        AD          
Sbjct: 264 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFINPEGNNRPRSARERLAADVLRHLEPDDL 323

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L+      ILT+    L+ Q++ L+  + + L F E   
Sbjct: 324 VKYGLIPEFIGRLPVTAVLEPLDIHALEAILTEPRDALVKQFQTLLSMDDVQLHF-EQGA 382

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
                   +   T    GAR L+ ++E ++ ++ +
Sbjct: 383 IEAIAAEAHRRKT----GARALRGILEELMLELMY 413


>gi|195112088|ref|XP_002000608.1| GI10327 [Drosophila mojavensis]
 gi|193917202|gb|EDW16069.1| GI10327 [Drosophila mojavensis]
          Length = 672

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 387 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 440

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 441 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 500

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L
Sbjct: 501 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 560

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED+++++A +A+  ++     GAR L+++ME++L D  F       ++V
Sbjct: 561 LGLDEVDLSFTEDAVESIASLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRSV 615

Query: 413 VIDAEYVR 420
            I A+YVR
Sbjct: 616 HITADYVR 623



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 322 NIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDANYNV 381

Query: 114 VR 115
            R
Sbjct: 382 ER 383


>gi|167745380|ref|ZP_02417507.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662]
 gi|167655101|gb|EDR99230.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662]
          Length = 480

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 12/171 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L+VGPTG GKT
Sbjct: 135 APHKIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKT 194

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G +VE ++  L+  A N V E+      E   
Sbjct: 195 YLVKTLARLLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEA------EHGI 248

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
           I  +E  +D  + K   +N+R+V  + ++ G +      E+++ V  TS +
Sbjct: 249 IFIDE--IDK-IAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 296



 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+++V    +Q  +N      +GI+F+DE DKI  + + N   VS E VQ+ LL L+EG+
Sbjct: 225 DVESVLSKLLQAADNDVDEAEHGIIFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 284

Query: 283 SVSTKYG-----------SINTDHILFIASGA-------------------FHVS----- 307
            V    G           +INT +ILFI  GA                   FH       
Sbjct: 285 EVEVPVGATSKNAMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSIGFHADLKDKF 344

Query: 308 ---------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                          R   ++PE  GR P+   L+ L+K     IL + ++ ++ QY++L
Sbjct: 345 DKDENILSRVTVDDLREYGMIPEFLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKL 404

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411
           ++ + + L F E +++A+A+ A+   +     GAR L+ ++E+ + DI F    D     
Sbjct: 405 LELDEVELIFDESALEAIAEKALEKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGR 459

Query: 412 VVIDAEYVRLH 422
           V+I+ +Y+  H
Sbjct: 460 VIINRDYILNH 470


>gi|255326614|ref|ZP_05367691.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           mucilaginosa ATCC 25296]
 gi|255296354|gb|EET75694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           mucilaginosa ATCC 25296]
          Length = 455

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPK 54
           +PREI S L+ Y+IGQ  AKR +A+A+ N ++R                 A  + EL   
Sbjct: 71  TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT ++  LA+    PF  V+ T  TE GYVG +VE I+  L++ A   +
Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190

Query: 115 RESRR 119
            +++R
Sbjct: 191 AKAQR 195



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 56/212 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           GI+++DE DKI AR  G  + ++R    EGVQ+ LL ++EG+  +V  + G         
Sbjct: 196 GIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTVATVPPEGGRKHPAHANI 254

Query: 290 SINTDHILFIASGAF------------------------HVSRPAD-----------LLP 314
            I+T +ILFI +GAF                         V  P D           ++P
Sbjct: 255 EIDTSNILFIVAGAFDNIDDRIAARVGAGGIGFGAELGGSVKNPLDQIMPEDLAHYGIIP 314

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  LN+ +   +LT+ ++ L+ QY+ L   +G+ L   + +I A+A +A
Sbjct: 315 ELIGRLPVISTLSELNEKELARVLTEPKNALLKQYRHLFALDGVDLVLDDAAIAAIARLA 374

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
               +     GAR L+ +ME++L+ I F   D
Sbjct: 375 AERGT-----GARGLRAMMEQILQPIMFDIPD 401


>gi|301167837|emb|CBW27422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteriovorax
           marinus SJ]
          Length = 436

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 5/104 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE--LMPKNILLVGPTG 63
           P EI   LD Y+IGQ  AK+ +++A+ N ++R     +    +DE  L   NILL GPTG
Sbjct: 66  PHEIKLHLDNYVIGQDRAKKIISVAVHNHYKRISHGSVNKGRKDEVELAKSNILLAGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            GKT I++ LA+    PF   + T  TE GYVG +VE II +L+
Sbjct: 126 SGKTLIAQSLAKYLNVPFAIADATSLTEAGYVGEDVENIILNLL 169



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  +V  K G          +
Sbjct: 182 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVAAVPPKGGRKHPQQEFIQV 241

Query: 292 NTDHILFIASGAF----------HVSRPADL----------------------------L 313
           +T +ILFI +GAF             RP  L                            +
Sbjct: 242 DTKNILFIVAGAFVGLDKIIEKRLTKRPMGLVTKEEKVEQSVVEKLGGIEAEDLSKFGLI 301

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT+ ++ +  QY++L + +GI ++F E+++  +A  
Sbjct: 302 PEFIGRLPVNALLQELDEEALVKILTEPKNAITKQYEKLFEYDGIEVEFEEEALKEVAAT 361

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L+ ++E+ + D+ +
Sbjct: 362 ALRKKT-----GARGLRAILEQTMLDVMY 385


>gi|329766942|ref|ZP_08258470.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           haemolysans M341]
 gi|328837667|gb|EGF87292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           haemolysans M341]
          Length = 402

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I+  L+ Y+I Q  AK++VA+A+ N ++R +   +   EL   NI L+G TG GK
Sbjct: 61  LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIKAAENHDIELQKSNIALIGSTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSA 164



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 174 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPGEEMIKI 233

Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315
           NT +ILFI  GAF                  S+  +L                    +PE
Sbjct: 234 NTKNILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELKDDKDIISKVKHEDLVKFGMIPE 293

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV  +L+ L++ D   +LT+ +++++ QY+ L   +G+ L F E++++ +A  ++
Sbjct: 294 FIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFDLDGVKLIFEEEALEEIAKESI 353

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
              +     GAR L++++E +L D+ F
Sbjct: 354 KRKT-----GARGLRSIIEELLLDVMF 375


>gi|302385024|ref|YP_003820846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
 gi|302195652|gb|ADL03223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
          Length = 477

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  + S +   VS E VQ++LL L+EGS+V    GS           ++T
Sbjct: 245 GIIFIDEIDKIAKKKSTSSRDVSGESVQQELLKLLEGSTVEVPVGSNQKNALTPMTAVST 304

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
           ++ILFI  GAF                                   HV+    R   ++P
Sbjct: 305 ENILFICGGAFPDLEDIIKERLKEKSSIGFSAELKDRYEKDPNILSHVTNEDLRKFGMIP 364

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ V L+SL+K     +L + ++ ++ QYK L++ + + L F +++++ +A+ A
Sbjct: 365 EFLGRLPITVTLESLDKDLLVRVLKEPKNAILKQYKRLLELDEVNLVFEDEALEWIAEEA 424

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E  + DI +    D    +VVI   Y+
Sbjct: 425 LKKKT-----GARALRAIIENFMLDIMYEVPKDPNIGSVVITRAYL 465



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P  I  +LD Y+IGQ+ AK+ +++A+ N ++R  L  D R        ++   NIL++G
Sbjct: 127 APHVIRRKLDDYVIGQEQAKKVISVAVYNHYKRVYL-TDSRKKDEEENVQIEKSNILMIG 185

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           PTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R
Sbjct: 186 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLTAADNDVDKAER 244


>gi|242310371|ref|ZP_04809526.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
 gi|239522769|gb|EEQ62635.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
          Length = 413

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
             P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R  Q P +   E+   NILL+GPTG G
Sbjct: 61  MPPKELKAILDEYVIGQEKAKKVFSVAVYNHYKRILQNPQEEDTEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLMAQTLAKSLNIPIAICDATSLTEAGYVGEDVENILTRLLQEA 165



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 175 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 234

Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314
           NT  ILFI  GAF                  H  +              P DL     +P
Sbjct: 235 NTKDILFICGGAFDGLEEIIERRIGGNTLGFHHQKNTKVNSHNLLEKVEPDDLVSFGLIP 294

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L+ + K     IL   ++ L  QYK+L   +G++L F  ++++A+A++A
Sbjct: 295 ELIGRLHMIATLEKITKEAMVNILQKPKNALTKQYKQLFALDGVVLTFQPEALEAIAELA 354

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+++ME ++ DI +   +L+   V+I  E V
Sbjct: 355 IQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEVIITKETV 394


>gi|328951760|ref|YP_004369094.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452084|gb|AEB07913.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 595

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 6/112 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDE---LMPKN 55
           K+ FN  P E+   L+ Y++ Q+ AK  +A  +    NR R  Q    + D     +  N
Sbjct: 58  KINFNLKPEELEDYLNEYVVKQETAKSILATKICTHFNRIRYLQDQGRVPDPGIGSIKNN 117

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           I+L+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV
Sbjct: 118 IILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLV 169



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 90/216 (41%), Gaps = 68/216 (31%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYG----------- 289
            +GI+++DE DKI A  SGN IG  VSR GVQR LL  +E + V  K             
Sbjct: 180 QFGIIYIDEIDKIAA--SGNLIGPDVSRSGVQRALLKPMEETEVDLKTPHDPISQIQAIE 237

Query: 290 -----------SINTDHILFIASGAFH-----------------VSRP------------ 309
                      ++NT +ILFI SGAF+                   RP            
Sbjct: 238 HYRRTGKREKRTLNTRNILFIVSGAFNGLEKFIKDRLAKQEIGFHGRPRSKKRDREFWRQ 297

Query: 310 ---ADLLP-----EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
               DL+      E  GR PV   L+ L   D   IL +  + +I+  K   +  GI + 
Sbjct: 298 VNAEDLIKYGFESEFVGRLPVIAVLEELTADDLYEILKNPNNPIIISKKRDFRAYGIDIK 357

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           F + ++  LA+ A    +     GAR L +V+E+ L
Sbjct: 358 FEDRALHLLAEKAAQERT-----GARGLVSVIEKSL 388


>gi|295110618|emb|CBL24571.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus obeum A2-162]
          Length = 480

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R  +  D  DE+     N+L++GPTG G
Sbjct: 126 APHKIKATLDEYVIGQEYAKKVMSVAVYNHYKR--VATDTMDEIAIEKSNMLMIGPTGCG 183

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 184 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEH 237



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 55/209 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++N
Sbjct: 237 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVN 296

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 297 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPNLLEKVTVDDLRNFGMI 356

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   +  L +     IL +  + ++ QY++L+  + + L+F ED++ A+A  
Sbjct: 357 PEFIGRLPIIFTMNGLTEDMMVQILREPRNAILKQYQKLLALDEVKLEFEEDALRAIAAK 416

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+  ++     GAR L+ ++E  + DI +
Sbjct: 417 AMEKHT-----GARALRAILEEYMLDIMY 440


>gi|288818081|ref|YP_003432429.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787481|dbj|BAI69228.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751683|gb|ADO45166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hydrogenobacter thermophilus TK-6]
          Length = 411

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI A+ SG    ++R    EGVQ+ LL ++EG+  +            ++ 
Sbjct: 176 GIVYIDEIDKI-AKKSGINPSITRDVSGEGVQQALLKIMEGTVANVPPQGGRKHPHQEFI 234

Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313
            ++T  ILFI  GAF                                 +  P DL+    
Sbjct: 235 QVDTTDILFICGGAFVGLEDIIKRRLGKSTIGFESQVKGAFKEMNVLELVEPDDLIHFGL 294

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L + D   ILT+ +++L+ QYK+L + + + L+FT++++  +A 
Sbjct: 295 IPEFIGRLPVIAVLDELTEEDLVRILTEPKNSLVKQYKKLFEMDNVDLEFTQEALIEIAR 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ++   +     GAR L+ +ME ++ D+ F    ++  K V+ID E VR
Sbjct: 355 ESIKRKT-----GARGLRAIMEEIMTDVMFEIPSMKGVKKVIIDEEVVR 398



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTGV 64
           P +I S LD Y++GQ+ AKR +++A+ N ++R   +++     D E+   NILL+GPTG 
Sbjct: 61  PEKIKSFLDEYVVGQERAKRILSVAVYNHYKRVKAKEMGLGFDDVEVEKSNILLIGPTGS 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+
Sbjct: 121 GKTLLAKTLAKLLNVPFAIADATSLTEAGYVGEDVENVLTRLL 163


>gi|227503051|ref|ZP_03933100.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49725]
 gi|227076112|gb|EEI14075.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49725]
          Length = 428

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 12/123 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--------ELMPKNI 56
           P +I S LD+Y+IGQ  AKR +++A+ N ++R    +    D R         E+   NI
Sbjct: 65  PSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSNI 124

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 125 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 184

Query: 117 SRR 119
           ++R
Sbjct: 185 AQR 187



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 57/221 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 188 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 247

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 248 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGAKLGTEDEREKVDLFSQVRPEDLVKFGL 307

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+ +++L+ QY  L + +   L   + ++DA+A+
Sbjct: 308 IPEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAE 367

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A+   +     GAR L+ ++E +L  + F   D ++ + V
Sbjct: 368 LALERKT-----GARGLRAILEELLVPVMFELPDREDISAV 403


>gi|296453942|ref|YP_003661085.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183373|gb|ADH00255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 459

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
             PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVA 110
           E GYVG +VE +++ L+  A
Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%)

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
           ++A + TR   R        SD   D+EVA      SN  + G   VG   L++  ++VM
Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248
                           P ++ D +          D++TV +  +Q  +       +GI++
Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217

Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293
           +DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S                ++T
Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276

Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315
             ILFI  GAF                      H +   D                LLPE
Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A+AD+A+
Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              +     GAR L++++ER L+D  F    L + K V++D   V
Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436


>gi|291530697|emb|CBK96282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           siraeum 70/3]
          Length = 430

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64
           P E+   LD+YIIGQ +AK+ + +++ N +++     +  AD   EL   N+LL+GPTGV
Sbjct: 63  PTELKEILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A
Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 167



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 58/229 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG  S+V  + G          
Sbjct: 176 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 235

Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312
           INT +ILFI  GAF                                  H   P DL    
Sbjct: 236 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 295

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+  +D++ A+A
Sbjct: 296 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEINDDAMRAIA 355

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419
             A    +     GAR L+TV+E  L DI F A SD     V++  E V
Sbjct: 356 KKAAERKT-----GARGLRTVVEEALSDIMFDAPSDDTISKVILTGECV 399


>gi|282856772|ref|ZP_06266033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pyramidobacter piscolens W5455]
 gi|282585395|gb|EFB90702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pyramidobacter piscolens W5455]
          Length = 432

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG  S++  K G          +
Sbjct: 190 GIVYIDEIDKIARKSESTSITRDVSGEGVQQALLKILEGTVSNIPPKGGRKHPQQEFIQV 249

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADL----- 312
           NT +ILFI  GAF      V R                             P DL     
Sbjct: 250 NTANILFICGGAFDGLENIVGRRVNKKVIGFDSDIRNGTAADRYDLLRQVEPEDLVSFGF 309

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR P+ V L+SL+      +LT+ +++L+ QY++  + E + LD+  ++I A+A+
Sbjct: 310 IPELVGRLPLLVPLQSLDADALVRVLTEPKNSLVRQYQKNFEMENVELDYQPEAIRAIAE 369

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYV 419
            A +  +     GAR L+ +ME ++ ++ +    S +  Q K +VI  EYV
Sbjct: 370 KAASKGT-----GARGLRAIMENLMLNLMYEVPSSNTKGQIKKIVITPEYV 415



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+A+++A+ N ++R        + EL   N+LL+GPTG GKT
Sbjct: 78  PKEIKEYLDEYVIGQDYAKKAISVAVYNHYKRIVTGFSGGEVELQKSNLLLLGPTGSGKT 137

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+    PF   + T  TE GYVG +VE ++  LV  A
Sbjct: 138 LLAQSLAKKLNVPFAISDATTLTEAGYVGEDVENVLVRLVQAA 180


>gi|61211644|sp|Q8G5R1|CLPX_BIFLO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 472

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            +P   R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145
           E GYVG +VE +++ L+  A   V  ++      DE+ + A  + E            TS
Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233

Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192
            TR+V  +       K+ +G I+   ++        D++  D      I GGA VG+ ++
Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270

Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A
Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD+A+   +     GAR L++++ER L+D  F    L + + V++D   V
Sbjct: 391 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436


>gi|34556512|ref|NP_906327.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella
           succinogenes DSM 1740]
 gi|46576390|sp|Q7MAS4|CLPX1_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1
 gi|34482226|emb|CAE09227.1| CLP PROTEASE [Wolinella succinogenes]
          Length = 417

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 4/116 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
           +P+E+ S LD Y+IGQ+ AK+  ++A+ N ++R    + L  +   E+   NILL+GPTG
Sbjct: 62  TPKELKSALDEYVIGQERAKKVFSVAVYNHYKRIFKKELLEEEDETEISKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++ R
Sbjct: 122 SGKTLMAQTLARFLNVPIAICDATSLTEAGYVGEDVENILTRLLQAAEGDVKKAER 177



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 178 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQDFVQI 237

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI  GAF                                H+  P DL     +P
Sbjct: 238 DTSQILFICGGAFDGMIELIKRRMGGNSLGFHGDKKGKSEESALLHLVEPDDLVSYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + K     ILT  ++ L+ QY++L   +   L F  ++++A+A++A
Sbjct: 298 ELIGRLHVITTLDEITKEAMLEILTKPKNALVKQYQKLFTMDEAELSFEPEALEAIAELA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E V  D+ +   +L+E  V+I  E V
Sbjct: 358 IKRKT-----GARGLRAIIEEVTLDLMYDLPELKEYEVIITKECV 397


>gi|288553619|ref|YP_003425554.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           pseudofirmus OF4]
 gi|288544779|gb|ADC48662.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           pseudofirmus OF4]
          Length = 424

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+++++A+ N ++R   +      EL   NI ++GPTG GKT
Sbjct: 64  PQEIRQILDDYVIGQDQAKKSLSVAVYNHYKRINSMNRSEEVELAKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313
           +T ++LFI  GAF                               ++S+  P DLL     
Sbjct: 236 DTTNVLFICGGAFDGIEQIIKRRLGKKVIGFGSEVKQEELKPGEYLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+      ILT  ++ L+ QY++L++ + + L+FT++++  +A  
Sbjct: 296 PEFIGRLPVISSLEPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTDEALVEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMF 379


>gi|269926533|ref|YP_003323156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790193|gb|ACZ42334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 422

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 2/112 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD Y++GQ  AK+ +++A+ N ++R      + D EL   NIL++GPTG GKT
Sbjct: 67  PKKIYELLDNYVVGQDRAKKTLSVAVYNHYKRVAADMQIDDVELQKSNILMIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A ++I R  R
Sbjct: 127 LLAQTLAKILDVPFSIADATALTEAGYVGEDVENILLRLIQAADLDIQRAER 178



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 179 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEFIQI 238

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                   HV  P DLL   
Sbjct: 239 DTTNILFICGGAFEGLEDIVAKRIGAKRSLGFARQEYDSGQSEGSVLQHVI-PEDLLKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V L  L K D   ILT  ++ +I QY++LM  + + L FT D+++A A
Sbjct: 298 LIPEFIGRLPVVVTLDPLTKEDLIHILTKPKNAIIKQYQKLMALDNVELQFTNDALEAAA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   +     GAR L++ +E VL +  +    L   +  ++D + +R
Sbjct: 358 EEAIARKT-----GARGLRSTIEEVLLETMYEIPSLTGVRKCIVDGDTIR 402


>gi|237750429|ref|ZP_04580909.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC
           43879]
 gi|229373959|gb|EEO24350.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC
           43879]
          Length = 428

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPA----------DLRD--EL 51
           SP+E+ + LD Y++GQ+ AK+  ++A+ N ++R    Q++ A          DL +  EL
Sbjct: 64  SPKELKAHLDEYVVGQEQAKKVFSVAIYNHYKRLLHQQRVAAKTDENIVNVTDLEENVEL 123

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 124 SKSNILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAA 182



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  +
Sbjct: 192 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIKM 251

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-----------------LLP 314
           +T +ILFI  GAF                    +  + AD                 L+P
Sbjct: 252 DTSNILFICGGAFDGVEDIIKRKLGNNVLGFDSNPKQQADEDNILHKIETDDLVSFGLIP 311

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L S++K     ILT  ++ +I QY++L + +G  L F +D+I+ +A++A
Sbjct: 312 ELIGRLHVIATLDSISKEAMISILTQPKNAIIKQYQKLFELDGAKLVFEDDAIERIAELA 371

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F   +L    V+I  + V
Sbjct: 372 MERKT-----GARGLRAIVEDFSLDIMFDLPNLSGYEVIITRKCV 411


>gi|239621943|ref|ZP_04664974.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132956|ref|YP_004000295.1| clpx [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482287|ref|ZP_07941308.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688892|ref|YP_004208626.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690867|ref|YP_004220437.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|239515134|gb|EEQ55001.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291517063|emb|CBK70679.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum F8]
 gi|311773938|gb|ADQ03426.1| ClpX [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916303|gb|EFV37704.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455723|dbj|BAJ66345.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460228|dbj|BAJ70848.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 472

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            +P   R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145
           E GYVG +VE +++ L+  A   V  ++      DE+ + A  + E            TS
Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233

Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192
            TR+V  +       K+ +G I+   ++        D++  D      I GGA VG+ ++
Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270

Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A
Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD+A+   +     GAR L++++ER L+D  F    L + + V++D   V
Sbjct: 391 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436


>gi|197122724|ref|YP_002134675.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|220917507|ref|YP_002492811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172573|gb|ACG73546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. K]
 gi|219955361|gb|ACL65745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 427

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 13/116 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R           P   R      EL   
Sbjct: 63  TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPARPGQARAAQDDVELQKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A
Sbjct: 123 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 178



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 69/216 (31%)

Query: 245 GIVFLDEFDKIV--------ARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286
           GIV++DE DKI          RD G       EGVQ+ LL ++EG+  +           
Sbjct: 188 GIVYVDEIDKIARKGDTPSPTRDVGG------EGVQQALLKIIEGTRANVTPRGGKKYNQ 241

Query: 287 -KYGSINTDHILFIASGAF----HVSR------------------------------PAD 311
            +Y  ++T ++LFI  GAF     V R                              P D
Sbjct: 242 QEYIQVDTSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGD 301

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR P+   L  L++ D   ILT  ++ L  QY +L   E + L FT++S
Sbjct: 302 LVRFGMIPEFVGRLPIIATLSDLSEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKES 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A A  A+   S     GAR L+ ++E+ + DI +
Sbjct: 362 LRATAREAMRRKS-----GARGLRAILEQAMLDIMY 392


>gi|330840087|ref|YP_004414667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|329747851|gb|AEC01208.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 430

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 66/232 (28%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290
           I+  EN GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G   
Sbjct: 184 IEKAEN-GIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRK 241

Query: 291 --------INTDHILFIASGAF-------------------------------------- 304
                   ++T +ILFI  GAF                                      
Sbjct: 242 HPEAPTIKVDTKNILFIVGGAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDEL 301

Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
            H  RP DL+     PEI GR PV   L++L++ D   ILT+ +   + QY++L+  + +
Sbjct: 302 IHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMDNV 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L F ED++ A+A  A+   +     GAR L+ ++E  + D+ F      EK
Sbjct: 362 ELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEK 408



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P  I + LD YII Q  AK+ +++A+ N ++R +      D  ++   N++++GP+G GK
Sbjct: 77  PHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCGK 136

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TA+   L+RL   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 137 TALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 180


>gi|227546001|ref|ZP_03976050.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213635|gb|EEI81484.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 472

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 65  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 124

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            +P   R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 125 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145
           E GYVG +VE +++ L+  A   V  ++      DE+ + A  + E            TS
Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233

Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192
            TR+V  +       K+ +G I+   ++        D++  D      I GGA VG+ ++
Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270

Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A
Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD+A+   +     GAR L++++ER L+D  F    L + + V++D   V
Sbjct: 391 IADIAIKQGA-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436


>gi|295132507|ref|YP_003583183.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda
           SM-A87]
 gi|294980522|gb|ADF50987.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda
           SM-A87]
          Length = 410

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 58/222 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG++V+            K+  +
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313
           +T++ILFIA GAF     ++S+                            P DL     +
Sbjct: 234 DTENILFIAGGAFDGIEKNISKRLNMQAVGFSASKSDDNIERTNLLKYIIPKDLKDFGLI 293

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P   ++  L++   R ILT+ ++ +I QY +L + + I    T++++D + + 
Sbjct: 294 PEIIGRLPALTYMNPLDQETLRSILTEPKNAIIKQYTKLFEMDEIEFTATDEALDFIVEK 353

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413
           AV        +GAR L+++ E +L D  F    SD+ E T+ 
Sbjct: 354 AVEYK-----LGARGLRSLCEAILTDAMFDLPESDVTEFTLT 390



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P+ I + LD YIIGQ+  K+ +++A+ N ++R   P +D   E+   NI++VG TG GKT
Sbjct: 62  PKSIKAFLDEYIIGQEATKKVMSVAVYNHYKRLLQPDSDDDIEIQKSNIVMVGETGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 122 LMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNVDKAQR 173


>gi|306836716|ref|ZP_07469679.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49726]
 gi|304567394|gb|EFM42996.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 431

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 12/123 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--------ELMPKNI 56
           P +I S LD+Y+IGQ  AKR +++A+ N ++R    +    D R         E+   NI
Sbjct: 68  PSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187

Query: 117 SRR 119
           ++R
Sbjct: 188 AQR 190



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGAKLGTEDEREKVDLFSQVRPEDLVKFGL 310

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+ +++L+ QY  L + +   L   + ++DA+A+
Sbjct: 311 IPEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAE 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYV 419
           +A+   +     GAR L+ ++E +L  + F   D ++ + V I AE V
Sbjct: 371 LALERKT-----GARGLRAILEELLVPVMFELPDREDISAVHITAECV 413


>gi|170516913|gb|ACB15392.1| ClpX [Bifidobacterium longum]
          Length = 467

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 90  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 149

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            +P   R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 150 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 209

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145
           E GYVG +VE +++ L+  A   V  ++      DE+ + A  + E            TS
Sbjct: 210 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 258

Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192
            TR+V  +       K+ +G I+   ++        D++  D      I GGA VG+ ++
Sbjct: 259 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 237 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 295

Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 296 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 355

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A
Sbjct: 356 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 415

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD+A+   +     GAR L++++ER L+D  F    L + + V++D   V
Sbjct: 416 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 461


>gi|206890826|ref|YP_002248105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|254763870|sp|B5YI39|CLPX_THEYD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206742764|gb|ACI21821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 409

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   L+ Y+IGQ+ AK+ +++A+ N ++R        DE+   NI+L+GPTG GKT
Sbjct: 61  TPQEIHKFLNDYVIGQERAKKILSVAVYNHYKRI-FKGTSSDEIQKSNIMLIGPTGTGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 LLAQTLAKFLDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 162



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +            +Y  +
Sbjct: 172 GIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIVEGTLANIPPQGGRKHPQQEYIQL 231

Query: 292 NTDHILFIASGAF-------------------------------HVSRPADLL-----PE 315
           +T +ILFI  GAF                                 + P DL+     PE
Sbjct: 232 DTTNILFICGGAFVGLEEIIKKRIGKRTIGFLSETKKIDEENVLSQAEPEDLIKYGMIPE 291

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GRFPV   L  L++     ILT  ++ L+ QY++L   +G+ L FT+D++ A+A  A+
Sbjct: 292 FVGRFPVVATLNQLDEDALIEILTKPKNALVKQYQKLFSIDGVKLTFTDDALRAIAKKAI 351

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
              +     GAR L++++E ++ D+ +
Sbjct: 352 ERKT-----GARALRSILEDIMLDVMY 373


>gi|300871120|ref|YP_003785992.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
 gi|300688820|gb|ADK31491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
          Length = 402

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P+EI + LD+Y+IGQ  AK+ +++A+ N ++R        D E+   N+LL+GPTG G
Sbjct: 61  LPPKEIKALLDQYVIGQDYAKKILSVAVYNHYKRIMQDNTNNDVEIEKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 165



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 57/207 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-SVSTKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ S    YG           I
Sbjct: 175 GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIIEGTISSVPPYGGRKHPHQNNIDI 234

Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312
           NT +ILFI  GAF                                   H++        L
Sbjct: 235 NTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMENLEYDEIMKHIATEDLVKFGL 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ L + D   IL + +++LI QYK+L + + + L F ++++  +  
Sbjct: 295 IPELIGRLPVVATLQELKEEDLIRILKEPKNSLIKQYKKLFEYDNVDLSFDDEALKVIVK 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLED 399
            A+  ++     GAR L+ + E+V+ D
Sbjct: 355 KAMEEHT-----GARGLRALFEKVMLD 376


>gi|295425157|ref|ZP_06817862.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065216|gb|EFG56119.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 422

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P +I  +LD Y+IGQ   KR +++A+ N ++R  Q+  D   +L   NI L+GPTG GKT
Sbjct: 64  PMDIKKQLDDYVIGQDHTKRVLSVAVYNHYKRIGQMDIDSSTQLQKSNIALIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R
Sbjct: 124 YLAQTLAKILIVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIESAQR 175



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 176 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIRM 235

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313
           +T +ILFI  GAF                                 H     DL     +
Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVNKIDADDWTHYLTTGDLVKFGMI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L+  D   ILT+ ++ L+ QY++L+  + + L FT+ ++ A+AD+
Sbjct: 296 PEFIGRIPVISTLDKLDSDDLVRILTEPKNALVKQYQKLLSLDDVQLTFTDGALHAIADL 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A+  N     +GAR L+T++E  L DI +   S +D+++  V  D
Sbjct: 356 AIERN-----MGARGLRTIIENALIDIMYRTPSENDIEKVEVTKD 395


>gi|291548471|emb|CBL21579.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus sp. SR1/5]
          Length = 475

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y+IGQ+ AK+ +++ + N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 123 APHKIKATLDEYVIGQEYAKKVMSVGVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGCG 180

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++      E 
Sbjct: 181 KTYLVKMLARLLQVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EH 234

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
             I  +E  +D  + K   +N R+V  + ++ G +      E+++ V  TS +
Sbjct: 235 GIIFIDE--IDK-IAKKKNTNQRDVSGEAVQQGLLKLLEGSEVEVPVGATSKN 284



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ LL L+EGS V    G           ++N
Sbjct: 234 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGLLKLLEGSEVEVPVGATSKNAMVPMVTVN 293

Query: 293 TDHILFIASGAF-------------------------------HV--------SRPADLL 313
           T +ILFI  GAF                               HV         R   ++
Sbjct: 294 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPHVLEKVTVDDLRAFGMI 353

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L +     IL + ++ ++ QYK+L+  + + L+F + ++ A+A  
Sbjct: 354 PEFIGRLPIIFTLNGLTEDMLVKILKEPKNAILKQYKKLLALDEVKLEFEDGALHAIARK 413

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A+  ++     GAR L+ ++E  + DI +    D     VVI   Y++
Sbjct: 414 ALERHT-----GARALRAILEEYMLDIMYEIPKDDNIGEVVITEGYIQ 456


>gi|325283536|ref|YP_004256077.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           proteolyticus MRP]
 gi|324315345|gb|ADY26460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           proteolyticus MRP]
          Length = 404

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+EI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPTG GKT
Sbjct: 63  SPKEIKAFLDEFVIGQDEAKKALAVAVVSHYQRLSHP---DAGLQKSNILLIGPTGTGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 120 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQSA 162



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 52/205 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG++  V  + G          +
Sbjct: 172 GIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTTAQVPPQGGRKHPQQELVQV 231

Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317
           +T +ILFI  GAF     ++R                         P DL     +PE  
Sbjct: 232 DTRNILFIVGGAFDGMEDIARSRTNVRSVGFGAEAKGEEHEEVRFMPEDLVKFGLIPEFV 291

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L+ L++     ILT+ +  +I QY+ L   +G+ L FTE+++  +A  A   
Sbjct: 292 GRLPLVVQLQDLDEEALVRILTEPQGAIIRQYQALFGFQGVDLTFTEEALQEVAKRARER 351

Query: 378 NSTVGDIGARRLQTVMERVLEDISF 402
            +     GAR L+ V+E+ + D+ F
Sbjct: 352 KT-----GARGLRAVLEKAMTDLLF 371


>gi|255557853|ref|XP_002519956.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223541002|gb|EEF42560.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 698

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 17/120 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-----------DLRDE 50
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R      ++ P            D   E
Sbjct: 280 TPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLKKGPGEESGSSDAVDDDDNVE 339

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 340 LEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLSVA 399



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 409 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 468

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+  A            
Sbjct: 469 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAVTSSLLESVESA 528

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +L +     +LT+ ++ L  QYK+L     + L FTE 
Sbjct: 529 DLIAYGLIPEFIGRFPILVSLSALTEDQLVRVLTEPKNALGKQYKKLFSMNKVKLHFTEK 588

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A+  N+     GAR L+ ++E  L +  +   D++  +  +DA
Sbjct: 589 ALRLIAKKAMAKNT-----GARGLRAILESTLTEAMYEIPDVKTGSDRVDA 634


>gi|116872701|ref|YP_849482.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123463732|sp|A0AI71|CLPX_LISW6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116741579|emb|CAK20703.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 419

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R       +   EL   NI L+GPTG GK
Sbjct: 64  PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEEEVELSKSNICLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236

Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314
           +T +ILFI  GAF                              ++SR  P DLL     P
Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   ++  +A  A
Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E+++ ++ F
Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379


>gi|87301612|ref|ZP_01084452.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           5701]
 gi|87283829|gb|EAQ75783.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           5701]
          Length = 446

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI S LD+ ++GQ +AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 82  PQEIKSFLDQQVVGQDEAKKVLSVAVYNHYKRLAWQGDGKGETDRSATRLHKSNILLIGP 141

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 142 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVEQAQR 199



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 60/213 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 259

Query: 292 NTDHILFIASGAF----------------------------------HVSR---PADL-- 312
           +T  ILFI  GAF                                  HV R   P DL  
Sbjct: 260 DTSQILFICGGAFVGLEEVVQRRLGRNSIGFLPADGRGRGHRELKASHVLRHLEPDDLVR 319

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GR PV   L+ L+      ILT+    L+ Q++ LM  + + L+F   +I+A
Sbjct: 320 YGLIPEFTGRLPVSAVLEPLDVRSLESILTEPRDALVKQFQTLMSMDSVRLEFEPGAIEA 379

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 380 IAHEAHRRRT-----GARALRGIVEELMLDLMY 407


>gi|260887443|ref|ZP_05898706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|260862806|gb|EEX77306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 431

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 66/232 (28%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290
           I+  EN GI++LDEFDKI AR SG    ++     EGVQ+ LL ++EGS V  T  G   
Sbjct: 185 IEKAEN-GIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRK 242

Query: 291 --------INTDHILFIASGAF-------------------------------------- 304
                   ++T +ILFI  GAF                                      
Sbjct: 243 HPEAPTIKVDTKNILFIVGGAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDEL 302

Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
            H  RP DL+     PEI GR PV   L++L++ D   ILT+ +   + QY++L+  + +
Sbjct: 303 IHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMDNV 362

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L F ED++ A+A  A+   +     GAR L+ ++E  + D+ F      EK
Sbjct: 363 ELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEK 409



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P  I + LD YII Q  AK+ +++A+ N ++R +      D  ++   N++++GP+G GK
Sbjct: 78  PHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCGK 137

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TA+   L+RL   PF   + +  TE G+VG +VE  +R+L   A
Sbjct: 138 TALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181


>gi|154706445|ref|YP_001424147.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           Dugway 5J108-111]
 gi|189082494|sp|A9KDS7|CLPX_COXBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154355731|gb|ABS77193.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii Dugway 5J108-111]
          Length = 422

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL L+EG+  S            +Y  +
Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFI  GAF                                      + P DL+  
Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKIGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + EG+ +DF ED++ A+
Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416
           A  A+   +     GAR L++++E  L D+ +    +    + VVID+
Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R   Q   D   E+   NILL+GPTG G
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LA++   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162


>gi|23099532|ref|NP_692998.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus
           iheyensis HTE831]
 gi|46576554|sp|Q8CXB8|CLPX_OCEIH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22777762|dbj|BAC14033.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Oceanobacillus iheyensis HTE831]
          Length = 425

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R      +   E+   NI ++GPTG GKT
Sbjct: 64  PKEICDILDDYVIGQDKAKKNLSVAVYNHYKRVNSGKGNDEVEIAKSNIAMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARIINVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF--------------------HVSR-------------PADLL----- 313
           +T +ILFI  GAF                    H  +             P DLL     
Sbjct: 236 DTTNILFIVGGAFDGIDQVIKRRLGKKVIGFGSHEKQEDLDTGQLLSKVLPEDLLRYGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L  L++     ILT  ++ L+ QY++L + + + L+F E+++  +A  
Sbjct: 296 PEFIGRIPVIGSLTPLDEEALIEILTKPKNALVKQYQKLFEIDHVELEFEEEALQEIAKK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 356 AIERKT-----GARGLRSIIEGIIVDVMF 379


>gi|331701126|ref|YP_004398085.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128469|gb|AEB73022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           buchneri NRRL B-30929]
          Length = 415

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ++AKR +++A+ N ++R  ++ ++  D  EL   NI ++GPTG
Sbjct: 63  LTPAQILDKLNEFVIGQENAKRTLSVAVYNHYKRVNEMISEPDDDLELQKSNICIIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 SGKTYLAQTMAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 62/234 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          
Sbjct: 178 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQ 237

Query: 291 INTDHILFIASGAFH------VSR----------------------------PADLL--- 313
           I+T +ILFI  GAF        SR                            P DLL   
Sbjct: 238 IDTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTNSDEAAKVDAKNIMQSVIPEDLLKFG 297

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L++ +G  L+F   +++ +A
Sbjct: 298 LIPEFIGRLPILTALDKLDDHDLVRILTEPKNALVKQYKKLIELDGAELEFAPGALEKMA 357

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422
            +A+       D GAR L++++E V+ DI F   S +D+ +  V+I  E V  H
Sbjct: 358 QLAI-----ARDTGARGLRSIIEGVMRDIMFDLPSRNDVSK--VIITPETVTDH 404


>gi|195395804|ref|XP_002056524.1| GJ10182 [Drosophila virilis]
 gi|194143233|gb|EDW59636.1| GJ10182 [Drosophila virilis]
          Length = 683

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 399 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 452

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 453 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 512

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L
Sbjct: 513 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 572

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED+++++A +A+  ++     GAR L+++ME +L D  F       + V
Sbjct: 573 LGLDEVDLSFTEDAVESIATLAMERHT-----GARGLRSIMETLLLDPMFIVPGSDIRGV 627

Query: 413 VIDAEYVR 420
            I AEYVR
Sbjct: 628 HITAEYVR 635



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 329 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 388

Query: 109 VAINIVR 115
              N+ R
Sbjct: 389 ANYNVER 395


>gi|23465516|ref|NP_696119.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum NCC2705]
 gi|23326176|gb|AAN24755.1| ATP-dependent specificity component of the Clp protease
           [Bifidobacterium longum NCC2705]
          Length = 497

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P +I   L+RY+IGQ++AKRA+++A+ N ++R                           Q
Sbjct: 90  PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQ 149

Query: 42  QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            +P   R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  T
Sbjct: 150 SVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 209

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145
           E GYVG +VE +++ L+  A   V  ++      DE+ + A  + E            TS
Sbjct: 210 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 258

Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192
            TR+V  +       K+ +G I+   ++        D++  D      I GGA VG+ ++
Sbjct: 259 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288
            +GI+++DE DKI AR SG    ++R    EGVQ+ LL ++EG+  S             
Sbjct: 237 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 295

Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311
              ++T  ILFI  GAF                      H +   D              
Sbjct: 296 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 355

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A
Sbjct: 356 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 415

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +AD+A+   +     GAR L++++ER L+D  F    L + + V++D   V
Sbjct: 416 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 461


>gi|297626028|ref|YP_003687791.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921793|emb|CBL56353.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 425

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 6/108 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EIVS L+ YIIGQ  AK+A+A+A+ N ++R Q  AD         EL   NILL+GPT
Sbjct: 65  PAEIVSFLNSYIIGQDAAKKALAVAVYNHYKRVQAQADSSSKHDDDVELAKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 GCGKTYLAQTLARMLNVPFAMADATALTEAGYVGEDVENILLKLLQAA 172



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 241

Query: 292 NTDHILFIASGAFHV---------------------------------SRPADL-----L 313
           +T ++LFI  GAF                                    RP DL     +
Sbjct: 242 DTTNVLFIVGGAFSGLEEIIADRVGQGGVGFTNDSVKRQPVGLDPFAGVRPEDLHTFGLI 301

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   +  L+    R IL +  + L+ Q+++L + +G+ L+ T+D++ A+A+ 
Sbjct: 302 PEFIGRLPVITTVPRLDADVLRRILVEPRNALVKQFEKLFELDGVELELTDDAVSAVAEK 361

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           AV  N+     GAR L+ ++E  L D+ F     +E   VVI  + V 
Sbjct: 362 AVTRNT-----GARGLRAILEETLLDVMFEVPSHEEIGQVVITGDVVH 404


>gi|239907452|ref|YP_002954193.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
 gi|239797318|dbj|BAH76307.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
          Length = 417

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R            E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGSAGADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                    + PADL+    
Sbjct: 238 NTANILFIVGGAFIGLDKIVGQRQRGSAMGFGAKVEAKSDDDLSKLLTQAHPADLIKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L ++D   ILT+ ++ L+ QY++L + + + L F+++++DA+A 
Sbjct: 298 IPEFVGRIPILTSLEELTQTDLVRILTEPKNALVKQYQKLFELDKVRLRFSKNALDAIAQ 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ VME ++ DI +    L
Sbjct: 358 KAIERKT-----GARGLRNVMESIMLDIMYKLPSL 387


>gi|291543931|emb|CBL17040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. 18P13]
          Length = 421

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           MKL     P EI   LD Y++GQ  AK A+++++ N ++R     D  D EL   N+LL+
Sbjct: 63  MKL---LKPAEIKKVLDEYVVGQDAAKVALSVSVYNHYKRIFSQDDGEDVELQKSNVLLL 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + R
Sbjct: 120 GPTGVGKTFLAQTLARTLDVPFAIADATTITEAGYVGDDVENVLLRLIQAANYDVEAAER 179



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 57/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL ++EG  S+V  + G          I
Sbjct: 180 GIIYIDEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIHI 239

Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADLL----- 313
           NT +ILFI  GAF      +S+                            P DL+     
Sbjct: 240 NTKNILFICGGAFDGLERAISKRLQSSSLGFGADVISKKAKIKNIFRKAIPQDLVKFGMV 299

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR P+   L  L+++    ILT+ ++ L+ QY +L   + I L    ++++A+A  
Sbjct: 300 PELVGRLPIITALDELDEASLVRILTEPKNALVKQYCKLFGYDNIELVIEPEALEAIAKR 359

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVRLH 422
           A+   +     GAR L+ ++E +L    F A S+     V+++A  V+ H
Sbjct: 360 ALEQKT-----GARGLRAILEDILMQCMFDAPSESGIAKVIVNAACVQEH 404


>gi|33862334|ref|NP_893894.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9313]
 gi|46576458|sp|Q7V993|CLPX_PROMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33640447|emb|CAE20236.1| putative Clp protease ATP-binding subunit, ClpX [Prochlorococcus
           marinus str. MIT 9313]
          Length = 452

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I S LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQQIKSFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQR 201



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 69/231 (29%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284
           DMD  H          GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V
Sbjct: 193 DMDVEH-------AQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANV 245

Query: 285 STKYG---------SINTDHILFIASGAF---------HVSR------PAD--------- 311
             + G          I+T  ILFI  GAF          + R      P+D         
Sbjct: 246 PPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQKRLGRNAIGFMPSDGRGRSRANR 305

Query: 312 --------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                               L+PE  GR PV   L+ L+      ILT+    L+ Q+  
Sbjct: 306 DLQASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPRDALVKQFST 365

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           L+  + + L+F  D+++A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 366 LLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411


>gi|291523502|emb|CBK81795.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Coprococcus catus GD/7]
          Length = 475

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 65/112 (58%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P  + ++LD ++IGQ  AK+A+A+A+ N ++R         E+   NIL++GPTG GKT
Sbjct: 119 APHILKAKLDEFVIGQDQAKKAIAVAVYNHYKRVATNTMDDIEIEKSNILMIGPTGCGKT 178

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + + LARL   P    + T  TE GY+G ++E ++  L+  A N    + R
Sbjct: 179 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDTERAER 230



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + +     VS E VQ+ LL L+EGS V    G           +I+T
Sbjct: 231 GIIFIDEIDKIAKKKNTTARDVSGESVQQGLLKLLEGSEVEVPVGATSKNAMVPLVTIDT 290

Query: 294 DHILFIASGAF-------------HVS--------------------------RPADLLP 314
            +ILFI  GAF             H S                          R   ++P
Sbjct: 291 RNILFICGGAFPDLENIVKERLTRHSSIGFSAELKDKYDQDKNIVSKVTIDDLRAFGMIP 350

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ V L+ LN+     IL + ++ ++ QY++L+  + + L F ++++  +AD A
Sbjct: 351 EFIGRLPITVTLEGLNRDMMIRILKEPKNAILRQYQKLLALDEVDLRFDDEALGVIADKA 410

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + DI +
Sbjct: 411 IARKT-----GARALRSIIEEFMLDIMY 433


>gi|157273437|gb|ABV27336.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Chloracidobacterium thermophilum]
          Length = 415

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 9/108 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P E+ + LD Y+IGQ++ K+ +A+A+   ++R ++   LR       E+   NILL+GPT
Sbjct: 65  PIEVKAFLDDYVIGQEETKKKLAVAVYQHYKRVEM---LRTRTAGDVEIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A
Sbjct: 122 GTGKTLLAQTLARILNVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 169



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +D    I   VS EGVQ+ LL ++EG+  +            ++ ++
Sbjct: 179 GIIYIDEIDKICRKDDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFYAV 238

Query: 292 NTDHILFIASGAFHV---------------------SRPA------------------DL 312
           +T +ILFI  GAF                        RPA                   L
Sbjct: 239 DTTNILFICGGAFCGLERIIEKRIGKKSLGFNAKVDRRPAMKDGNIYSYVQPEDLIKYGL 298

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  L++     ILT  ++ +I QY+   + + + L FT+D++ A+A 
Sbjct: 299 IPEFVGRLPVIGTLHELDEDALVDILTKPKNAIIKQYQRQFEWDNVRLRFTDDALRAIAH 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A         +GAR L+ ++E ++ D  +
Sbjct: 359 MAYQRK-----VGARGLRMILEELMLDAMY 383


>gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 412

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P E+   LD Y+IGQ+ AK+ +++A+ N ++R +      D EL   N+LL+GPTG GKT
Sbjct: 59  PGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDDVELQKSNVLLIGPTGAGKT 118

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +R++ +
Sbjct: 119 LLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQNASFDIRKAEK 170



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 59/216 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 171 GIIYIDEIDKISRKSDTPSITRDVSGEGVQQALLKILEGTIANISPQGGRKHPQQEYLKI 230

Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD------ 311
           +T +ILFI  GAF                                   +SR         
Sbjct: 231 DTTNILFICGGAFDGLEKIIEKRLSKKTLGFITDGSNNRNDFKNMDYTLSRVESEDLIKF 290

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+ SD   ILT+ ++ LI QY+++ + E + L F  ++++ +
Sbjct: 291 GLIPEFIGRVPVISALNHLSTSDLVHILTEPKNALIKQYQKMFQFENVELKFEREALEKI 350

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           A+ A+   S     GAR L++++E +L D  F   D
Sbjct: 351 AEEALKRGS-----GARGLRSIIENILLDAMFDIPD 381


>gi|29654073|ref|NP_819765.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           RSA 493]
 gi|153209304|ref|ZP_01947339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212212796|ref|YP_002303732.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           CbuG_Q212]
 gi|212219037|ref|YP_002305824.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           CbuK_Q154]
 gi|46576521|sp|Q83DJ1|CLPX_COXBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066653|sp|B6J8W3|CLPX_COXB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066654|sp|B6J0V9|CLPX_COXB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29541339|gb|AAO90279.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii RSA 493]
 gi|120575420|gb|EAX32044.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212011206|gb|ACJ18587.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212013299|gb|ACJ20679.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 422

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     +   VS EGVQ+ LL L+EG+  S            +Y  +
Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T +ILFI  GAF                                      + P DL+  
Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + EG+ +DF ED++ A+
Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416
           A  A+   +     GAR L++++E  L D+ +    +    + VVID+
Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R   Q   D   E+   NILL+GPTG G
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           KT +++ LA++   PF   + T  TE GYVG +VE II+ L+
Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162


>gi|242064888|ref|XP_002453733.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor]
 gi|241933564|gb|EES06709.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor]
          Length = 624

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD+++IGQQ AK+ +++A+ N ++R       ++  AD  +           
Sbjct: 143 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLTRRSAADCSESDSCTSDTDMV 202

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 203 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 260



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFP+ V L SL++     +LT+ ++ L  QY +L +   + L FTE+++  +A
Sbjct: 461 LIPEFVGRFPILVSLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIA 520

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
             A+  N+     GAR L++++E +L +  +   + +     IDA
Sbjct: 521 KRAIAKNT-----GARGLRSILESILTEAMYEIPETRTGKDKIDA 560


>gi|226356973|ref|YP_002786713.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus
           deserti VCD115]
 gi|226318963|gb|ACO46959.1| putative ATP-dependent Clp protease, ATP-binding subunit clpX
           [Deinococcus deserti VCD115]
          Length = 401

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD ++IGQ +AK+A+A+A+ + ++R   P D+   L   NILL+GPTG GKT
Sbjct: 60  TPKEIKAYLDDFVIGQDEAKKALAVAVVSHYQRLAHP-DVN--LQKSNILLIGPTGTGKT 116

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 117 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 159



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 52/205 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+   V  + G          +
Sbjct: 169 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 228

Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317
           NT +ILFI  GAF     ++R                         P DL     +PE  
Sbjct: 229 NTKNILFIVGGAFESMGEIARARTNVRAVGFGAEHKGDEKEELRFLPEDLVKFGLIPEFV 288

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L+ L++     ILT+ +  +I QY+ L   + + L+FT+ ++  +A  A   
Sbjct: 289 GRLPLVVQLQDLDEEALVRILTEPQGAIIKQYQALFGFQNVNLEFTDAALREVAHRARER 348

Query: 378 NSTVGDIGARRLQTVMERVLEDISF 402
            +     GAR L+ V+E+ + D+ F
Sbjct: 349 KT-----GARGLRAVLEKAMTDLLF 368


>gi|283852375|ref|ZP_06369645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
 gi|283572223|gb|EFC20213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
          Length = 417

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD-ELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R      A   D E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAGADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           NT +ILFI  GAF                                   ++ PADL+    
Sbjct: 238 NTANILFIVGGAFIGLEKIVGHRMRGTAMGFGAKVEARHDDDMSRMLSLAHPADLIKFGL 297

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+   L+ L + D   ILT+ ++ L  QY++L + + + L FT+++++++A+
Sbjct: 298 IPEFIGRIPILTSLEELTREDLVRILTEPKNALTKQYQKLFELDKVRLRFTKNAMESIAE 357

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ VME ++ +I +    L
Sbjct: 358 KAIERKT-----GARGLRNVMESIMLEIMYKLPSL 387


>gi|240950345|ref|ZP_04754615.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
 gi|240295156|gb|EER45975.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
          Length = 414

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 182 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGSRKHPKGETIPV 241

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312
           +T  ILFI  GAF                                        P DL   
Sbjct: 242 DTSKILFICGGAFAGLDKIVESRTNKQGGIGFAAELKNDKERQDLTELFKQVEPEDLVRF 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L+++    ILT+ ++ +I QY+ L + EG+ L+FT+D++ A+
Sbjct: 302 GLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVELEFTQDALVAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           A  A+     V   GAR L++++E +L D  +    L  K V ++   V
Sbjct: 362 AKKAI-----VRKTGARGLRSIVEGLLLDTMYDLPTLNAKKVTVEKACV 405



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 9/107 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R  L + L +       EL   NILL+G
Sbjct: 65  TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKR--LKSALSNHEVTNGVELGKSNILLIG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           PTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 123 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169


>gi|89889549|ref|ZP_01201060.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Flavobacteria bacterium BBFL7]
 gi|89517822|gb|EAS20478.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Flavobacteria bacterium BBFL7]
          Length = 413

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 57/226 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234

Query: 292 NTDHILFIASGAF----HVSR------------------------------PAD-----L 312
           NT++ILFIA GAF     V R                              P D     +
Sbjct: 235 NTENILFIAGGAFDGIEKVIRKRLNMQAVGFSASMSNDDVKDQDNILKYIIPKDVKDFGM 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PEI GR PV  H+  L+    R ILT+ ++ +I QY +L   + I    T+ ++D + +
Sbjct: 295 IPEIIGRLPVLTHMNPLDAGTLRAILTEPKNAIIKQYTKLFGMDDITFTITDGALDYIVE 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            A+        +GAR L+++ E +  D  F      +K   +   Y
Sbjct: 355 KAIEYK-----LGARGLRSLCEAIFTDAMFDLPSSDDKEFKVTKTY 395



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P++I + LD YIIGQ+  K+ +++A+ N ++R  Q+  D   E+   NIL+VG TG GKT
Sbjct: 63  PQDIKAFLDEYIIGQEFTKKVMSVAVYNHYKRLLQVDNDDDIEIQKSNILMVGQTGTGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A
Sbjct: 123 LIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165


>gi|157738413|ref|YP_001491097.1| ATP-dependent protease ATP-binding subunit ClpX [Arcobacter
           butzleri RM4018]
 gi|157700267|gb|ABV68427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter
           butzleri RM4018]
          Length = 407

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R     ++ D  EL   N+LL+GPTG G
Sbjct: 61  TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQKEINDDIELNKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ +++    P    + T  TE GYVG +VE ++  LV  A   ++++ R
Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAER 174



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI        I   VS EGVQ+ LL +VEG+  +V  K G          +
Sbjct: 175 GIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGAVVNVPPKGGRKHPGQEALQV 234

Query: 292 NTDHILFIASGAFH------------------------------VSR-------PADLLP 314
           +T +ILFI  GAF                               +S+          L+P
Sbjct: 235 DTTNILFICGGAFDGLEDIIKKKQGANVLGFNQDKKSKNNEDKIISKVETDDLVKYGLIP 294

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  + + D   ILT+ ++ LI QY +L + + ++L+F +D++  LA +A
Sbjct: 295 ELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLEFEKDALKELAKLA 354

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +     V   GAR L++++E ++ DI F     + KTVVI  E V
Sbjct: 355 I-----VRKTGARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVV 394


>gi|167627760|ref|YP_001678260.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597761|gb|ABZ87759.1| ATP-dependent Clp protease subunit X [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 417

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66
           P EI   LD YIIGQ + K+ +++A+ N ++R       D   EL   N+LL+GPTG GK
Sbjct: 59  PIEIKKYLDDYIIGQDNPKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  K G          +
Sbjct: 172 GIIYIDEIDKIARKSESASITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231

Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311
           +T  ILFI  GAF               +   AD                          
Sbjct: 232 DTSDILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTEKLMQKVESEDLTRFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++F++ ++  +A
Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSDQALVEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
             A+   +     GAR L+T++E VL ++ F   +SD  EK ++ D
Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIIND 392


>gi|260906248|ref|ZP_05914570.1| ATP-dependent protease ATP-binding subunit ClpX [Brevibacterium
           linens BL2]
          Length = 397

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 11/113 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD-ELMPKNIL 57
           PREI   L  Y++GQ+ AK+A+++A+ N ++R          + L +D  + E+   NIL
Sbjct: 65  PREIFDFLQEYVVGQEPAKKALSVAVYNHYKRIRSLQGAEDTKTLGSDDTEVEIAKSNIL 124

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LVGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 125 LVGPTGSGKTYLAQSLAKRLDVPFAVADATALTEAGYVGEDVENILLKLIQAA 177



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 56/215 (26%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-------- 287
           IQ  E +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S          
Sbjct: 181 IQKAE-HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHP 239

Query: 288 ---YGSINTDHILFIASGAFHVSR--------------------------------PADL 312
              +  I+T ++LFI +GAF                                    P DL
Sbjct: 240 HQDFLQIDTTNVLFIVAGAFAGMEEIVAGRKGKHGIGFGALLQSKNDEEDLYADILPEDL 299

Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           L     PE  GR PV   + +L+++    ILT+ ++ L+ QY+ + + + + L F  D++
Sbjct: 300 LKFGLIPEFIGRLPVLATVSTLDRAALISILTEPKNALVKQYQRMFEFDNVELRFETDAL 359

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A++D+A+ L  T    GAR L++++E VL+ + F
Sbjct: 360 EAISDLAL-LRGT----GARGLRSILEEVLQPVMF 389


>gi|19705311|ref|NP_602806.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|23813864|sp|Q8RHJ9|CLPX_FUSNN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|19713280|gb|AAL94105.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 423

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDNMGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+        +GAR L+ ++E  + DI F   S ++++E T+  D 
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITITKDT 411


>gi|218135128|ref|ZP_03463932.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990513|gb|EEC56524.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC
           43243]
          Length = 465

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI ++LD Y+IGQ  AK+ +++A+ N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 120 APHEIKAKLDEYVIGQDYAKKVMSVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 177

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V
Sbjct: 178 KTYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDV 226



 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  +       VS E VQ+ +L L+EGS +    G           ++NT
Sbjct: 232 GIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSDIEVPVGATSKNAMVPLTTVNT 291

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 292 RNILFICGGAFPELDEVIKERLNEQASIGFIADLKDKYDNDDKLLSKVTLEDLRNFGMIP 351

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+K     IL + ++ ++ QYK+L+  + + L+F + +++A+A+ A
Sbjct: 352 EFLGRLPVVFTLDPLDKDMLVSILKEPKNAILKQYKKLLALDEVELEFDDSALEAIAEKA 411

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E  + DI +    D     V+I  +Y+
Sbjct: 412 LEKKT-----GARALRSIIEEFMLDIMYEIPKDDNIGRVIITGDYI 452


>gi|189219050|ref|YP_001939691.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylacidiphilum infernorum V4]
 gi|189185908|gb|ACD83093.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylacidiphilum infernorum V4]
          Length = 420

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 11/112 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------ELMPKNILL 58
           P EI ++L+ Y+IGQ  AK+ +++A+ N ++R    ++L D          E+   NILL
Sbjct: 63  PAEIFAQLEDYVIGQNKAKKVLSVAVHNHYKRI-FSSELTDLSSLNQLKDVEIEKTNILL 121

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGPTG GKT +++ +ARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 VGPTGSGKTLLAKTIARLLDVPFCIADATSLTEAGYVGEDVESILLRLLQNA 173



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 58/218 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS  +            ++  I
Sbjct: 183 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKMLEGSVCNVPPQGGRKHPHQEFIRI 242

Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADLL-----P 314
           NT++ILFI  GAF      ++R                           P DL+     P
Sbjct: 243 NTENILFICGGAFIGLDKIIARRRGKQVLGFKQSLEGEDAASEEFTEIEPEDLIAYGMIP 302

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GRFPV   L  L++ +   ILT+ ++ +I QY +L   + I L+F +++I   A  A
Sbjct: 303 EFVGRFPVITSLSELSEEELVKILTEPKNAIIKQYVKLFALDHIKLNFAKEAIRFFAQEA 362

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409
               +     GAR L+ ++E+V+ ++ F   S +D++E
Sbjct: 363 KKKKT-----GARALKNMIEKVMLEVMFDLPSRTDIEE 395


>gi|296328559|ref|ZP_06871078.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154368|gb|EFG95167.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 423

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R       D   EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 61/225 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313
           +T +ILFI  GAF                     V +               P DL+   
Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDNMGTEGEFFKKVLPEDLMKQG 308

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVV 413
             A+        +GAR L+ ++E  + DI F   S ++++E T+ 
Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITIT 408


>gi|253579880|ref|ZP_04857148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848879|gb|EES76841.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 472

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           +P +I   LD+Y+IGQ+ AK+ +++A+ N ++R  +  D  DE+     N+L++GPTG G
Sbjct: 118 APHKIKETLDQYVIGQEKAKKVMSVAVYNHYKR--VATDTMDEIEIEKSNMLMIGPTGCG 175

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 176 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 229



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 56/227 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++N
Sbjct: 229 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEVEVPVGANSKNAMVPLVTVN 288

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 289 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDNDPHLLQKVTVEDIRSFGMI 348

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  LN+     IL + ++ ++ QY++L+  + + L+F + ++ A+A  
Sbjct: 349 PEFIGRLPIIFTLDGLNEDMLVKILQEPKNAILKQYQKLLALDEVKLEFEDGALHAIAAK 408

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+       D GAR L+ ++E  + DI +    D     VVI  EY+
Sbjct: 409 ALER-----DTGARALRAILEEYMLDIMYEIPKDDSIGEVVITREYI 450


>gi|160871875|ref|ZP_02062007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
           grylli]
 gi|159120674|gb|EDP46012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
           grylli]
          Length = 439

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD--ELMPKNILLV 59
           P EI    + ++IGQ+ AK+ +++A  N ++R +L       P + +D  EL   N+LL+
Sbjct: 68  PSEIHEVFNEFVIGQEFAKKILSVAAYNHYKRLELIKKARLHPLNTKDDTELSKSNVLLI 127

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 128 GPTGSGKTLLAKTLARVFNLPFAIADATTLTEAGYVGDDVENILQKLLQAA 178



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  R     I   VS EGVQ+ LL L+EG+  SV  + G          I
Sbjct: 188 GIIYIDEIDKISRRAENPSITRDVSGEGVQQGLLKLLEGTVASVPLQGGRKHPNQETVQI 247

Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311
           +T +ILFI  G F               +   AD                          
Sbjct: 248 DTTNILFICGGTFSGLEKIIRERTEKTGIGFSADVRSKKDKKSLTTLLSRLDSEDLIKYG 307

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR PV   L+ L++S    IL + ++ LI QY +L K + + L+F ED++  +A
Sbjct: 308 IIPELIGRLPVIATLEELDESMLIQILKEPKNALIKQYFKLFKMDNVDLEFREDALQMVA 367

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L+ ++E VL D  +    +Q    +VI+A  V
Sbjct: 368 RKALARKT-----GARGLRAILESVLLDTMYELPSMQNVNKIVIEASTV 411


>gi|317129829|ref|YP_004096111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474777|gb|ADU31380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cellulosilyticus DSM 2522]
          Length = 423

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P+EI   L+ Y+IGQ  AK+ +++A+ N ++R      +   EL   NI L+GPTG GKT
Sbjct: 64  PQEIREILNDYVIGQDQAKKTLSVAVYNHYKRVNSTKKNDEVELAKSNICLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 63/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313
           +T ++LF+  GAF                               ++S+  P DLL     
Sbjct: 236 DTTNVLFVVGGAFDGIEQIIKRRLGKKVIGFGSETTSEDLKEGQYLSKILPEDLLRYGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L+++    ILT  ++ L+ QYK+L++ + + L+F++D++  +A  
Sbjct: 296 PEFIGRLPVISSLEPLDEAALVEILTKPKNALVKQYKKLLELDDVELEFSDDALKEVAKQ 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVRLH 422
           A+   +     GAR L++++E ++ D+ +   DL  +T     +I  E V+ H
Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMY---DLPSRTDIAKCIITDESVKGH 400


>gi|189499644|ref|YP_001959114.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides BS1]
 gi|238692274|sp|B3ENA3|CLPX_CHLPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189495085|gb|ACE03633.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides BS1]
          Length = 437

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
            +P+ I+  L +Y+IGQ+ A++++++A+ N ++R +    +RD+    +   NILL+GPT
Sbjct: 79  LNPKSIMESLGQYVIGQERARKSLSVAVYNHYKRIESQEWVRDDDDVVIEKSNILLIGPT 138

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +
Sbjct: 139 GTGKTLLAQTLANLLEVPFTIVDATSLTEAGYVGDDVETILARLLQAS 186



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 63/228 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GI+++DE DKI AR S N + ++R    EGVQ+ LL ++EG+ V             +  
Sbjct: 196 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLI 253

Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310
           ++NT +ILFI  GAF          V++ +                              
Sbjct: 254 NVNTRNILFICGGAFEGLDKIIGRRVAKASIGFGTAVKAQQLESDPEILKEVSQDDMHEY 313

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L+    R IL + ++ LI QY++L + E   L F + ++D++
Sbjct: 314 GLIPEFIGRLPVISTLDPLDSKALRNILVEPKNALIKQYQKLFEMEECELVFEDKALDSV 373

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416
            ++A++  +     GAR L++V+E ++ DI F    +    K V+ +A
Sbjct: 374 VEIAIDRGT-----GARALRSVLEGIMIDIMFELPSMSGVRKCVITEA 416


>gi|296394281|ref|YP_003659165.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Segniliparus
           rotundus DSM 44985]
 gi|296181428|gb|ADG98334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Segniliparus
           rotundus DSM 44985]
          Length = 426

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 10/110 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD-----ELMPKNILLVG 60
           P EI   L+ Y++GQ  AKR +A+A+ N ++R Q    P   RD     EL   NIL++G
Sbjct: 64  PAEIREFLESYVVGQDPAKRTLAVAVYNHYKRIQAGDKPG--RDGKASVELAKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 PTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 62/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T ++LFI +GAF          V +                         P DL+    
Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGERVGKRGLGFGAQIRTREDVETRDYFAEVMPEDLIKFGL 300

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   + +L+K     ILT+ ++ L+ QY+ L + + + L+F++++++A+AD
Sbjct: 301 IPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFSKEAVEAVAD 360

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423
            A+ L  T    GAR L+ +ME VL  + +   S  D+ +  VVI  E VR ++
Sbjct: 361 QAL-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVITEETVRENV 407


>gi|33151466|ref|NP_872819.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi
           35000HP]
 gi|46576468|sp|Q7VP79|CLPX_HAEDU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33147686|gb|AAP95208.1| ATP-dependent Clp protease, ATP-binding ClpX subunit [Haemophilus
           ducreyi 35000HP]
          Length = 418

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R      LR+           EL   NI
Sbjct: 65  TPHQIHAHLDDYVIGQEHAKKVLSVAVYNHYKR------LRNALSHHQETNGVELGKSNI 118

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           LL+GPTG GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+
Sbjct: 119 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 59/218 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GI+F+DE DKI  +     I   VS EGVQ+ LL L+EG+  +    GS          +
Sbjct: 182 GIIFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIAV 241

Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312
           +T  ILFI  GAF           H                            P DL   
Sbjct: 242 DTSKILFICGGAFAGLDKVVEARTHTQSGIGFAAELKKDKDREDLTSLFKQIEPEDLVKF 301

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR PV   L+ L+++    ILT  ++ +I QY+ L K EG+ L FT+D++ A+
Sbjct: 302 GLIPELIGRLPVITPLQELDEAALIAILTKPKNAIITQYQALFKMEGVELKFTKDALTAI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A       S V   GAR L++++E +L D  +    L+
Sbjct: 362 AQ-----KSIVRKTGARGLRSIVENLLLDTMYDLPTLK 394


>gi|291460967|ref|ZP_06026140.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379762|gb|EFE87280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           periodonticum ATCC 33693]
          Length = 433

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 76  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+   
Sbjct: 136 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 181



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 58/211 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 191 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 250

Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312
           +T +ILFI  GAF        SR                             P DL    
Sbjct: 251 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMSGAEGEFFKKVLPEDLVKQG 310

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE+++  +A
Sbjct: 311 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 370

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+        +GAR L+ ++E  + DI F
Sbjct: 371 RRALKRK-----MGARGLRAIIEHTMLDIMF 396


>gi|19553586|ref|NP_601588.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391230|ref|YP_226632.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum ATCC 13032]
 gi|23813853|sp|Q8NN26|CLPX_CORGL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21325158|dbj|BAB99780.1| ATP-dependent protease Clp, ATPase subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326570|emb|CAF21052.1| PROBABLE ATP-DEPENDENT PROTEASE (ATP-BINDING SPECIFICITY SUBUNIT)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 426

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKNILLVG 60
           P EI + LD Y+IGQ  AKR +++A+ N ++R +    +          EL+  NIL++G
Sbjct: 66  PSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILMLG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 175



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 58/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  + G          +
Sbjct: 185 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 244

Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312
           +T +ILFI +GAF                     VS                P DL    
Sbjct: 245 DTTNILFIVAGAFSGLEKVIADRNGKKGLGFGVEVSSKKEEANIVDIFKDVLPEDLVKFG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   + +L++     +LT+  ++L+ QY+ L + +  +L FT+D+++ +A
Sbjct: 305 LIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYRRLFEMDDAVLTFTDDALEEIA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           + A+   +     GAR L+ +ME +L  I +   D
Sbjct: 365 NQALERKT-----GARGLRAIMEEILVPIMYDLPD 394


>gi|124021783|ref|YP_001016090.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9303]
 gi|166214802|sp|A2C5R5|CLPX_PROM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123962069|gb|ABM76825.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9303]
          Length = 452

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI + LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQEIKNFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQR 201



 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 69/231 (29%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284
           DMD  H          GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V
Sbjct: 193 DMDVEH-------AQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANV 245

Query: 285 STKYG---------SINTDHILFIASGAF-----HVSR----------PAD--------- 311
             + G          I+T  ILFI  GAF      V R          P+D         
Sbjct: 246 PPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQRRLGRNAIGFMPSDGRGRSRANR 305

Query: 312 --------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                               L+PE  GR PV   L+ L+      ILT+    L+ Q+  
Sbjct: 306 DLKASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPRDALVKQFST 365

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           L+  + + L+F  D+++A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 366 LLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411


>gi|15615614|ref|NP_243918.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           halodurans C-125]
 gi|20137994|sp|Q9K8F4|CLPX_BACHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|10175674|dbj|BAB06771.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus halodurans C-125]
          Length = 424

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ  AK+++++A+ N ++R   +      EL   NI ++GPTG GKT
Sbjct: 64  PHEIREILDDYVIGQDLAKKSLSVAVYNHYKRINSMSKSEEVELSKSNICMIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 58/224 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235

Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313
           +T +ILFI  GAF                               ++S+  P DLL     
Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGKKVIGFGSEVKQDELKPGEYLSKVLPEDLLRFGLI 295

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L++     ILT  ++ L+ QYK+L++ + + L+FT++++  +A  
Sbjct: 296 PEFIGRLPVISSLQPLDEEALIEILTKPKNALVKQYKKLLELDDVNLEFTDEALREIARK 355

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415
           A+   +     GAR L++++E +  D+ F   A D  E  ++ D
Sbjct: 356 AIERKT-----GARGLRSIIEGLTLDVMFDLPARDDVETCIIHD 394


>gi|323697669|ref|ZP_08109581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. ND132]
 gi|323457601|gb|EGB13466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans ND132]
          Length = 418

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62
             P+EI   LD+Y+IGQ+ AK+ +++A+ N ++R    A        E+   NILL+GPT
Sbjct: 62  LPPQEIKELLDQYVIGQEQAKKILSVAVHNHYKRVFYAAANSGGDDVEIDKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 169



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 179 GIIYIDEIDKVARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 238

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   ++ P DL+    
Sbjct: 239 DTSNILFILGGAFIGLDKIVQQRKQGSGMGFGAKVEAKKEMGLGELFGMAEPMDLIKFGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV+  L+ L + D   ILT+ ++ LI QY++L + + + L FTE+++ A+A 
Sbjct: 299 IPEFVGRIPVQTALEELTEEDLVRILTEPKNALIKQYRKLFELDKVELTFTENALTAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L+ V+E+ + DI +    + + +  VI+A  V
Sbjct: 359 QAIERRT-----GARGLRNVLEKTMLDIMYKLPAMPDVRECVINAAVV 401


>gi|145296354|ref|YP_001139175.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum R]
 gi|166214773|sp|A4QGA7|CLPX_CORGB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|140846274|dbj|BAF55273.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 426

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKNILLVG 60
           P EI + LD Y+IGQ  AKR +++A+ N ++R +    +          EL+  NIL++G
Sbjct: 66  PSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILMLG 125

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 126 PTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 175



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 58/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++  + G          +
Sbjct: 185 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 244

Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADL---- 312
           +T +ILFI +GAF                     VS               RP DL    
Sbjct: 245 DTTNILFIVAGAFSGLEKVIADRNGKKGLGFGVEVSSKKEEADIVDIFKDVRPEDLVKFG 304

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   + +L++     +LT+  ++L+ QY+ L + +  +L FT+D+++ +A
Sbjct: 305 LIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYQRLFEMDDAVLTFTDDALEEIA 364

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           + A+   +     GAR L+ +ME +L  I +   D ++   VI
Sbjct: 365 NQALERKT-----GARGLRAIMEEILVPIMYDLPDREDVGEVI 402


>gi|317498553|ref|ZP_07956847.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894246|gb|EFV16434.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 461

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+++V    +Q  +N      +GIVF+DE DKI  + + N   VS E VQ+ LL L+EG+
Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265

Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312
            V    G           +INT +ILFI  GAF                +   ADL    
Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDRF 325

Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                               +PE  GR P+   L+ L K     IL + ++ ++ QY++L
Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411
           ++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D    +
Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440

Query: 412 VVIDAEYVRLH 422
           V I  +Y+  H
Sbjct: 441 VTITRDYIENH 451



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V     
Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230

Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
                  +D +  + K   +N+R+V  + ++ G +      E+++ V  TS +
Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277


>gi|296118753|ref|ZP_06837329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968242|gb|EFG81491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 431

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 16/126 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLRDELMP 53
           P EI S LD+Y+IGQ  AKR +++A+ N ++R               +   AD   E+  
Sbjct: 65  PSEISSFLDKYVIGQDAAKRVLSVAVYNHYKRIKAEESQAAAASSSRKSAKADEEVEISK 124

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-IN 112
            NIL++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  +
Sbjct: 125 SNILMLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFD 184

Query: 113 IVRESR 118
           + R SR
Sbjct: 185 VDRASR 190



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 191 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQEFIQL 250

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 251 DTSNILFIVAGAFAGLEKVIAERVGKKGVGFGSKLDTQEERERVDMFEKVRPEDLVKFGL 310

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   +++L++     +LT+ +++L+ QY+ L + +G  LD    +++ +AD
Sbjct: 311 IPEFIGRLPVVATVENLDQDSLVKVLTEPKNSLVKQYQRLFEMDGAHLDIEPGALNEIAD 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +A+   +     GAR L+ ++E +L  + +   D  +  TV + AE VR
Sbjct: 371 LALERKT-----GARGLRAILEELLVPVMYDLPDRDDIDTVRLTAEAVR 414


>gi|119025607|ref|YP_909452.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765191|dbj|BAF39370.1| ATP-dependent specificity component of the Clp protease
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 473

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278
           D++TV +  IQ  +        GIV++DE DKI AR SG    ++R    EGVQ+ LL +
Sbjct: 207 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 265

Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------- 304
           +EG+  S                I+T  ILFI  GAF                       
Sbjct: 266 LEGTVASVPVEGTRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAVWH 325

Query: 305 -----------HVSRP--AD--LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                       VS    AD  LLPE  GR PV   L+ L + D   IL + E+ L+ QY
Sbjct: 326 DHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 385

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L   +G+ L FTE +I  +A  ++   +     GAR L++++E+ LED  F
Sbjct: 386 QKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 433



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 21/121 (17%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49
           P +I + LD ++IGQ+ AK+ +++A+ N ++R  +  ++R+                   
Sbjct: 101 PAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNM--EMRESSRIGKERMHGHDDSFEGV 158

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++   NILL+GPTGVGKT +++ LA +   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 159 QVAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 218

Query: 110 A 110
           A
Sbjct: 219 A 219


>gi|154487069|ref|ZP_02028476.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis
           L2-32]
 gi|154084932|gb|EDN83977.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis
           L2-32]
          Length = 437

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278
           D++TV +  IQ  +        GIV++DE DKI AR SG    ++R    EGVQ+ LL +
Sbjct: 171 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 229

Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------- 304
           +EG+  S                I+T  ILFI  GAF                       
Sbjct: 230 LEGTVASVPVEGTRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 289

Query: 305 -----------HVSRP--AD--LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                       VS    AD  LLPE  GR PV   L+ L + D   IL + E+ L+ QY
Sbjct: 290 DHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 349

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L   +G+ L FTE +I  +A  ++   +     GAR L++++E+ LED  F
Sbjct: 350 QKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 397



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 21/121 (17%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49
           P +I + LD ++IGQ+ AK+ +++A+ N ++R  +  ++R+                   
Sbjct: 65  PAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNM--EMRESSRIGKERMHGHDDSFEGV 122

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++   NILL+GPTGVGKT +++ LA +   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 123 QVAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 182

Query: 110 A 110
           A
Sbjct: 183 A 183


>gi|61211758|sp|Q607D1|CLPX3_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 3
          Length = 435

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 66/236 (27%)

Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------- 289
            +GIV++DE DK+      + N   +S EGVQ+ LL  VEGS V                
Sbjct: 182 EWGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGE 241

Query: 290 --SINTDHILFIASGAF-----HVSR-------------------------------PAD 311
             +I+T +ILFIA GAF     HV +                               P D
Sbjct: 242 EVTIDTRNILFIAGGAFPGLERHVEKRIGPPRGEIGFHAPVQDAKRPLLEELLAEIQPED 301

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GRFPV   L+ L+++ F  ILT+    L+ QY++L   EG+ L FTE +
Sbjct: 302 LRRFGLIPEFIGRFPVIAPLEPLDEAAFVRILTEPRDALVRQYQKLFAYEGVELVFTEPA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           I  +A   +       D GAR L++++E +L    F   S SD+++   V+DA+ V
Sbjct: 362 IRRIAARTIER-----DTGARGLRSIIEHILRRPMFEIPSQSDVRQ--CVVDADTV 410



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59
           P +I   LD+Y+IGQ+ AK  +++A+ N ++R +           +D   ++   NIL++
Sbjct: 64  PEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILMI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT ++  LAR+ G PF+  + T  T+ GYVG +VE I+  L++ A
Sbjct: 124 GPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAA 174


>gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 405

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
            +P+E+   LD Y+IGQ++AK+ +++A+ N ++R  L   + D   E+   NILL+GPTG
Sbjct: 57  LTPKELKHFLDEYVIGQEEAKKTLSVAVYNHYKR--LFKHIEDDDTEISKSNILLIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +AR    P    + T  TE GYVG +VE I+  L+  A
Sbjct: 115 SGKTLLAQSIARFLDVPIAIADATNLTEAGYVGEDVENILTKLLMAA 161



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 171 GIVFIDEIDKIARLGENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 230

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T +ILFI  GAF                                    P DL     +P
Sbjct: 231 DTSNILFICGGAFDGLNEMIKRRLGGNIMGFGQKQHSKNEEENLLRFVEPDDLVNYGLIP 290

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  +   D   ILT+ ++ L+ QY++L + +G+ L F  ++++ +A  A
Sbjct: 291 ELIGRLHVIATLNPITVEDMVRILTEPKNALVKQYQKLFELDGVQLTFQPEALEKIAQKA 350

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E +L DI +   +L+   VVI  + V
Sbjct: 351 IERKT-----GARGLRSILEEILLDIMYELPELEGYEVVITPDVV 390


>gi|317473075|ref|ZP_07932374.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|316899413|gb|EFV21428.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 339

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+++V    +Q  +N      +GI+F+DE DKI  + + N   VS E VQ+ LL L+EG+
Sbjct: 84  DVESVLSKLLQAADNDVDEAEHGIIFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 143

Query: 283 SVSTKYG-----------SINTDHILFIASGA-------------------FHVS----- 307
            V    G           +INT +ILFI  GA                   FH       
Sbjct: 144 EVEVPVGATSKNAMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSIGFHADLKDKF 203

Query: 308 ---------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                          R   ++PE  GR P+   L+ L+K     IL + ++ ++ QY++L
Sbjct: 204 DKDENILSRVTVDDLREYGMIPEFLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKL 263

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411
           ++ + + L F E +++A+A+ A+   +     GAR L+ ++E+ + DI F    D     
Sbjct: 264 LELDEVELIFDESALEAIAEKALEKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGR 318

Query: 412 VVIDAEYVRLH 422
           V+I+ +Y+  H
Sbjct: 319 VIINRDYILNH 329



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L+VGPTG GKT + + LAR
Sbjct: 2   LDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKTYLVKTLAR 61

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           L   P    + T  TE GY+G +VE ++  L+  A N V E+      E   I  +E  +
Sbjct: 62  LLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEA------EHGIIFIDE--I 113

Query: 136 DALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
           D  + K   +N+R+V  + ++ G +      E+++ V  TS +
Sbjct: 114 DK-IAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 155


>gi|297792267|ref|XP_002864018.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309853|gb|EFH40277.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 605

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDE----- 50
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +            D+ DE     
Sbjct: 198 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGFVSRSDNLDMEDENIDHV 257

Query: 51  -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            L   N+LL+GPTG GKT +++ LAR+   PF   + T  T+ GYVG +VE I+  L   
Sbjct: 258 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 317

Query: 110 AINIVRESRR 119
           A   V E++R
Sbjct: 318 AGCNVEEAQR 327



 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 70/240 (29%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI----------- 291
           GIV++DE DK+   +  S  G  VS EGVQ+ LL L+EG+ V      +           
Sbjct: 328 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVPIPEKGLRRDPRGDSIQM 387

Query: 292 NTDHILFIASGAF-----HVS-RPAD---------------------------------- 311
           +T  ILFI  GAF      VS R  D                                  
Sbjct: 388 DTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGFSSAAVTSSLLESLQSE 447

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +S L  QYK+L +   + L FTE 
Sbjct: 448 DLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLHFTEG 507

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAEYV 419
           +   +A  A++ N+     GAR L++++E +L +  F   D + E     K V++D E V
Sbjct: 508 ATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSVTEGSQSIKAVLVDEEAV 562


>gi|291559060|emb|CBL37860.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [butyrate-producing bacterium SSC/2]
          Length = 461

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+++V    +Q  +N      +GIVF+DE DKI  + + N   VS E VQ+ LL L+EG+
Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265

Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312
            V    G           +INT +ILFI  GAF                +   ADL    
Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDRF 325

Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                               +PE  GR P+   L+ L K     IL + ++ ++ QY++L
Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411
           ++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D    +
Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440

Query: 412 VVIDAEYVRLH 422
           V I  +Y+  H
Sbjct: 441 VTITRDYIENH 451



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V     
Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230

Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
                  +D +  + K   +N+R+V  + ++ G +      E+++ V  TS +
Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277


>gi|167765599|ref|ZP_02437663.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1]
 gi|167712784|gb|EDS23363.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1]
          Length = 461

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%)

Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           D+++V    +Q  +N      +GIVF+DE DKI  + + N   VS E VQ+ LL L+EG+
Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265

Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312
            V    G           +INT +ILFI  GAF                +   ADL    
Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDCF 325

Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                               +PE  GR P+   L+ L K     IL + ++ ++ QY++L
Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411
           ++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D    +
Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440

Query: 412 VVIDAEYVRLH 422
           V I  +Y+  H
Sbjct: 441 VTITRDYIENH 451



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V     
Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230

Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
                  +D +  + K   +N+R+V  + ++ G +      E+++ V  TS +
Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277


>gi|315636711|ref|ZP_07891941.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
 gi|315479026|gb|EFU69729.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
          Length = 276

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R     ++ D  EL   N+LL+GPTG G
Sbjct: 61  TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQNEINDDIELNKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ +++    P    + T  TE GYVG +VE ++  LV  A   ++++ R
Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAER 174



 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI        I   VS EGVQ+ LL +VEGS  +V  K G          +
Sbjct: 175 GIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGSVVNVPPKGGRKHPGQDALQV 234

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 235 DTTNILFICGGAF 247


>gi|317153551|ref|YP_004121599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943802|gb|ADU62853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 416

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62
             P+EI + LD Y+IGQ+ AK+ +++A+ N ++R    A        E+   NILL+GPT
Sbjct: 60  LPPQEIKALLDEYVIGQEQAKKILSVAVHNHYKRVFYAAANTGPDEVEIDKSNILLIGPT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 120 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 57/215 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  ++  K G          +
Sbjct: 177 GIIYIDEIDKVARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313
           +T +ILFI  GAF                                   ++ P DL+    
Sbjct: 237 DTSNILFILGGAFIGLDKIVQQRKQGSGMGFGAKVEAKRETDLGEMMGLAEPMDLIKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P++  L+ L + D   IL + ++ LI QY++L + + + L FTE+++ ++A 
Sbjct: 297 IPEFVGRIPIQTALQDLTEDDLMRILQEPKNALIKQYRKLFELDKVELRFTENALTSIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+   +     GAR L+ V+E+ + +I +    L
Sbjct: 357 QAIQRKT-----GARGLRNVLEKSMLEIMYKLPSL 386


>gi|53804066|ref|YP_114267.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|53757827|gb|AAU92118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 444

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 66/236 (27%)

Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------- 289
            +GIV++DE DK+      + N   +S EGVQ+ LL  VEGS V                
Sbjct: 191 EWGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGE 250

Query: 290 --SINTDHILFIASGAF-----HVSR-------------------------------PAD 311
             +I+T +ILFIA GAF     HV +                               P D
Sbjct: 251 EVTIDTRNILFIAGGAFPGLERHVEKRIGPPRGEIGFHAPVQDAKRPLLEELLAEIQPED 310

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GRFPV   L+ L+++ F  ILT+    L+ QY++L   EG+ L FTE +
Sbjct: 311 LRRFGLIPEFIGRFPVIAPLEPLDEAAFVRILTEPRDALVRQYQKLFAYEGVELVFTEPA 370

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           I  +A   +       D GAR L++++E +L    F   S SD+++   V+DA+ V
Sbjct: 371 IRRIAARTIER-----DTGARGLRSIIEHILRRPMFEIPSQSDVRQ--CVVDADTV 419



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59
           P +I   LD+Y+IGQ+ AK  +++A+ N ++R +           +D   ++   NIL++
Sbjct: 73  PEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILMI 132

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT ++  LAR+ G PF+  + T  T+ GYVG +VE I+  L++ A
Sbjct: 133 GPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAA 183


>gi|310830518|ref|YP_003965619.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
 gi|309249985|gb|ADO59551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
          Length = 395

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
              P EI  ELDR++IGQ +AK+ +++A+ N ++R  +   +  ++   NI++VGPTG G
Sbjct: 49  GLKPHEIKEELDRFVIGQDEAKKLLSVAVYNHYKRIHMKTKV--DIQKSNIMIVGPTGSG 106

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +   L+R+   P +  + T  T+ GYVG +VE I+  L+  A   V+++ +     D
Sbjct: 107 KTYLLETLSRILDVPLVIADATSLTQAGYVGDDVETILEKLIIKAGGDVQKAEQGIVYID 166

Query: 121 EVREQASINAEER 133
           E+ + AS   + R
Sbjct: 167 EIDKIASYEVDGR 179



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 58/233 (24%)

Query: 245 GIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS---------IN 292
           GIV++DE DKI + +         ++ + VQ  LL ++EG+ V  + G+         +N
Sbjct: 161 GIVYIDEIDKIASYEVDGRKRTKDIAGQAVQESLLKMIEGNEVHLQMGNQRLNKQRVILN 220

Query: 293 TDHILFIASGAF------------------HVSRPA-------------------DLLPE 315
           T +ILFI  GAF                    + PA                     +PE
Sbjct: 221 TKNILFIFGGAFVGLQDILQSRTKGVTKTVGFTTPAIPTDDIQDQELSQQDLVSYGFIPE 280

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   L  L K D   IL   ++ ++ QY+ L++ +G+ L F   +++ +A+ A+
Sbjct: 281 FMGRIPVIAVLNPLRKEDLMSILVKPKNAVLKQYQALLQMDGVKLSFHAKAVEHIAEEAM 340

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
             N     +GAR L+ ++E+ + D+ +S    +E K+++I  E +   +G+ P
Sbjct: 341 KKN-----VGARGLKGIVEKRMYDLMYSLPQKEEIKSLIITKEML---LGEAP 385


>gi|149376711|ref|ZP_01894469.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
 gi|149358950|gb|EDM47416.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
          Length = 427

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +++A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 69  TPAEIRDTLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKAEVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169



 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 59/225 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  +
Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311
           +T ++LFI  GAF                     V  P D                    
Sbjct: 242 DTGNMLFICGGAFAGLDKVIQERSERSSIGFSALVKSPDDTKNTGDIIKDVETEDLVKYG 301

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     ILT+ ++ L  QY++L   EG+ LDF ED++ A+A
Sbjct: 302 LIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415
             A+   +     GAR L+++ME  L D  +   S+     VVID
Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVID 401


>gi|304440713|ref|ZP_07400597.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370900|gb|EFM24522.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 403

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 61/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+             + ++   
Sbjct: 170 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPAQEFIQF 229

Query: 292 NTDHILFIASGAFHVSRPA--------------------------------------DLL 313
           NT+++LFI  GAF    P                                        L+
Sbjct: 230 NTENVLFICGGAFDGLAPIIEHRVGKNSIGFGQTVISETERDKNILSKLHTEDLIKFGLI 289

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV V L+ L++     IL   ++ L+ QYKEL+K +G+ L F E+++  +A +
Sbjct: 290 PELIGRLPVTVTLEELDEEALVEILKTPKNALVKQYKELLKLDGVDLKFEEEALKYIASM 349

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
           A+   S     GAR L+ V+E  + D+ F   S  ++QE  V+I  E V 
Sbjct: 350 AIKKKS-----GARGLRGVIEDTMMDVMFEIPSQDNIQE--VIITKESVE 392



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 4/111 (3%)

Query: 3   LTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           L F+F   +P+EI   LD Y+I Q+ AK+A+A+A+ N ++R    ++   EL   NIL++
Sbjct: 51  LDFDFELKTPKEIKEVLDSYVIKQEAAKKALAVAVYNHYKRIHHKSE-EVELQKSNILMI 109

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 110 GPTGSGKTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAA 160


>gi|119487887|ref|ZP_01621384.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
 gi|119455463|gb|EAW36601.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
          Length = 449

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 9/111 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD--ELMPKNILLV 59
           P +I   LD ++IGQ DAK+ +++A+ N ++R  L         +L D  EL   NI+LV
Sbjct: 80  PTDIKQYLDDHVIGQHDAKKVLSVAVYNHYKRLSLDRSSLSGNLNLDDGVELQKSNIMLV 139

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 140 GPTGCGKTLLAQTLAKQLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 190



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 63/223 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 200 GIIYIDEIDKISRKSENTSITRDVSGEGVQQALLKILEGTIVNVPPQGGRKHPYQDFIEI 259

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                            P D
Sbjct: 260 DTSKILFICGGAFVGLEKVIEQRLGKKSLGFIQSSETANNAAVKSVQRQDELLQYVEPDD 319

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   +  L++     ILT+ ++ LI QYK+L+K + + L+F +D+
Sbjct: 320 LVKFGLIPEFVGRIPVVTVISPLDEEALMRILTEPQNALIKQYKKLLKMDNVNLEFEQDA 379

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + A+A  A    +     GAR L+ ++E ++ D+ +     Q+
Sbjct: 380 MIAIAAEAYRRKT-----GARALRGILEELMLDVMYELPSRQD 417


>gi|170591731|ref|XP_001900623.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brugia malayi]
 gi|158591775|gb|EDP30378.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Brugia malayi]
          Length = 465

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 50/281 (17%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   L+++ ++++         + +  C   L+        D+DTV + 
Sbjct: 171 SNILLMGPSGVGKTYLTQILAEILD--------VPIAMCDCTLLTQSGYVGDDVDTVIQK 222

Query: 237 SIQMVE------NYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
            +   +        GIVFLDEFDKI +    +S +   V   GVQ+  L LVEG++V  K
Sbjct: 223 LLANADGDIDATQRGIVFLDEFDKISSSLDLESRSFRDVGGRGVQQAFLKLVEGTAVKVK 282

Query: 288 Y-GS------INTDHILFIASGAFH-----VSR----------------PADLLPEIQGR 319
             GS      ++T +ILFIASGAF+     +S+                   +LPE+ GR
Sbjct: 283 QPGSNGTRVDVDTTNILFIASGAFNNLDRIISQRLYKKLVGFGTGKDKEKFGMLPELVGR 342

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FPV V   SL +     I+ + +S+++ Q ++    + I L FT+ ++  +A  A    +
Sbjct: 343 FPVLVPFTSLTEELLVRIMKEPKSSIVSQAEKQFLLDNIQLCFTDCALKEIARTAAQKGT 402

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
                GAR L+++ E+VL D  +         +VIDA+ V+
Sbjct: 403 -----GARALRSITEKVLLDAKYDLPGTDIHKLVIDADVVK 438



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query: 31  AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
            I+   +  R  +  D  ++L   NILL+GP+GVGKT +++ LA +   P    + T  T
Sbjct: 148 TISFNKKSIRALMEMDKDNDLGKSNILLMGPSGVGKTYLTQILAEILDVPIAMCDCTLLT 207

Query: 91  EIGYVGRNVEQIIRDLV 107
           + GYVG +V+ +I+ L+
Sbjct: 208 QSGYVGDDVDTVIQKLL 224


>gi|87123285|ref|ZP_01079136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
 gi|86169005|gb|EAQ70261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
          Length = 450

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI S LDR ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+GP
Sbjct: 84  PQEIKSFLDRQVVGQEAAKKVLSVAVYNHYKRLAWQGDGNGETEQTATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+
Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLL 189



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 65/239 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                        H+  P D
Sbjct: 262 DTSQILFICGGAFVGLDDVVQKRLGRNSIGFMPDAGRGRHRANRDLQAAQVLRHLE-PDD 320

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + LDF   +
Sbjct: 321 LVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLDFEAGA 380

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           ++A+A  A    +     GAR L+ ++E ++ D+ +   S    KT  +    V  H G
Sbjct: 381 VEAIAHEAHRRKT-----GARALRGIVEELMLDLMYELPSRKNVKTFTVTRAMVEEHTG 434


>gi|212550899|ref|YP_002309216.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549137|dbj|BAG83805.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 410

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 56/230 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS  +V  K G          +
Sbjct: 177 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSLVNVPPKGGRKHPEQDMIQV 236

Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313
           NT +ILFI  GAF                          + R        P DL     +
Sbjct: 237 NTKNILFICGGAFDGIERKIAQRLSMQVVGYTANENTKKIDRNNLLKYIAPQDLKAFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PEI GR P+  +L+ L+    R ILT  +++++ QY +L   +G+ L F +++++ + D 
Sbjct: 297 PEIIGRLPILTYLEPLDCIALRDILTKPKNSIVKQYIKLFAMDGVKLSFDKETLNYIVDK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ++        +GAR L+++ E ++ D  F       K + I   Y +  I
Sbjct: 357 SIEFK-----LGARGLRSITENIMIDAMFEIPSTSRKELHITKNYAKERI 401



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63
           P++I + LD+Y+I Q  AKR +++A+ N ++R   P      D   E+   NILLVG TG
Sbjct: 61  PKDIKALLDQYVISQDTAKRYLSVAVYNHYKRLLQPRCTDDDDDDVEIEKSNILLVGATG 120

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +ARL   PF  V+ T  TE GYVG ++E ++  L+ VA
Sbjct: 121 TGKTLLAKTIARLLKVPFTIVDATVLTEAGYVGEDIESLLTRLLQVA 167


>gi|257452228|ref|ZP_05617527.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           3_1_5R]
 gi|257465977|ref|ZP_05630288.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917133|ref|ZP_07913373.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058771|ref|ZP_07923256.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           3_1_5R]
 gi|313684447|gb|EFS21282.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           3_1_5R]
 gi|313691008|gb|EFS27843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 423

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNIL 57
             P EI  +LD Y+IGQ+ AK+ +A+A+ N ++R                  EL   N+L
Sbjct: 67  LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKSKDNDEVELQKSNVL 126

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 127 LIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAA 179



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKHPNQPLIEI 248

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311
           +T +ILFI  GAF                     +  P +                    
Sbjct: 249 DTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAPKEQVGEGEFLSQVLPEDITKRG 308

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR P+  +L+ L++  F  ILT  ++ ++ QY++L + EG+ L+FTE+++  +A
Sbjct: 309 IIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQYQKLFQMEGVELEFTEEALAEVA 368

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422
            +A++       IGAR L++++E  + ++ +   SD   + V++  E V  H
Sbjct: 369 HLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSSIQKVILGKEAVLDH 415


>gi|121997788|ref|YP_001002575.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira
           halophila SL1]
 gi|121589193|gb|ABM61773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halorhodospira halophila SL1]
          Length = 417

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 47/198 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGS----SVSTKYGS---INT 293
           GIV++DE DK+ ARD   GIG    ++ EG Q+ LL L+EG     S + + GS   ++T
Sbjct: 193 GIVYIDEIDKLAARD---GIGGEPDLAGEGAQQGLLKLLEGRRLTVSSAGRQGSPVTVDT 249

Query: 294 DHILFIASGAFH------VSRPA----------------------DLLPEIQGRFPVRVH 325
             ILFI  GAF         RP                        LLPE+ GR PV   
Sbjct: 250 GQILFICGGAFEGLEALAAQRPGVGFTAAADEPAVPGAAAALQRFGLLPELVGRLPVVET 309

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L       ILT+  + L+ QY+ L   +G  L+ T D ++A+A  A    +     G
Sbjct: 310 LQPLATEHLIRILTEPRNALVRQYQVLFARDGCELEITADGLEAVAHRARARGT-----G 364

Query: 386 ARRLQTVMERVLEDISFS 403
           AR L+ V+E VL +  F+
Sbjct: 365 ARGLRAVLEEVLLEPMFA 382



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65
           PR +   LD+Y++GQ+ AK+ +++A+ N ++R  L A  R E   L   NILLVGP+G G
Sbjct: 81  PRSLRRYLDQYVVGQEQAKKVLSVAVYNHYKR--LVAAARGESVELGKSNILLVGPSGTG 138

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           K+ ++  LAR    PF+ V+ T  T  GY G + E +I  L+
Sbjct: 139 KSHLAECLARCVEVPFVTVDATTLTASGYAGDDAEAVIGRLL 180


>gi|317968360|ref|ZP_07969750.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0205]
          Length = 451

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I + LD  ++GQ++AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 85  PQDIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATKLHKSNILLIGP 144

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 145 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQR 202



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 63/215 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312
           +T  ILFI  GAF                                       H+ +P DL
Sbjct: 263 DTSQILFICGGAFVGLDDVVQRRMGRNAIGFIPEGGRRGRQSKDQQAAQVLRHL-QPDDL 321

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   L+ L+      ILT+    L+ Q++ L+  + + L+F   ++
Sbjct: 322 VKYGLIPEFIGRMPVNAVLEPLDNHALEAILTEPRDALVKQFQTLLSMDDVRLEFEPGAV 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 EAIAAEAHRRKT-----GARALRGIVEELMLDLMY 411


>gi|239623321|ref|ZP_04666352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522287|gb|EEQ62153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 474

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 56/231 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  +   N   VS E VQ++LL L+EGS+V    GS           +NT
Sbjct: 242 GIIFIDEIDKIAKKKQTNTRDVSGESVQQELLKLLEGSTVEVPVGSNQKNAMTPMATVNT 301

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
           D+ILFI  GAF                                   HV+    R   ++P
Sbjct: 302 DNILFICGGAFPDLEEIIKERLKKKSSMGFGSVLKDTYDNDPDILKHVTNEDLRAFGMIP 361

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV V L+ L +     IL + ++ +  QY++L+  + + L F +D++  +A+ A
Sbjct: 362 EFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQYEKLLSMDEVKLVFEDDALRWIAEEA 421

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
               +     GAR L+ ++E  + DI +    D    +VV+   Y+  + G
Sbjct: 422 GKRGT-----GARALRAILEEFMLDIMYEIPKDSNIGSVVVTRPYLEKNGG 467



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 9/121 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPK-NILL 58
           +P  I S LD Y+IGQ+ AK+ VA+A+ N ++R  L         A   D ++ K NIL+
Sbjct: 121 APHIIKSRLDEYVIGQEKAKKVVAVAVYNHYKRAFLDNRSAQGDAAPDEDIVIEKSNILM 180

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  ++
Sbjct: 181 IGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVERAQ 240

Query: 119 R 119
           R
Sbjct: 241 R 241


>gi|325104588|ref|YP_004274242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
 gi|324973436|gb|ADY52420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
          Length = 413

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 60/230 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GIV++DE DK VAR S N      VS EGVQ+ LL ++EG+ V+            K   
Sbjct: 176 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTIVNVPPQGGRKHPDQKMIP 234

Query: 291 INTDHILFIASGAF---------------------------------HVSRPADL----- 312
           +NT++ILFI  GAF                                     P DL     
Sbjct: 235 VNTNNILFICGGAFDGIEKKIANRLRTQTVGYKFAKENDDIDINNLYKYITPQDLKSFGL 294

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV  +L  L++     ILT+ +++LI QY++L + E I L+F+++  + + D
Sbjct: 295 IPELIGRVPVLTYLNPLDRETLLNILTEPKNSLIKQYQKLFEFEDIALEFSKEVYEFIVD 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVR 420
            A+        +GAR L+++ E ++ D  F     ++K+  + ID +Y +
Sbjct: 355 KALEFK-----LGARGLRSICEAIMIDAMFEIPSEKQKSKKLTIDLDYAK 399



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI   LD+Y+IGQ  AK+ +++A+ N ++R  Q++  D   E+   NI++VG TG 
Sbjct: 62  LKPLEIKRHLDQYVIGQDSAKKVLSVAVYNHYKRLNQKVGKD-EVEIEKSNIMMVGETGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 GKTLLAKTIAKILNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166


>gi|94498300|ref|ZP_01304860.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58]
 gi|94422302|gb|EAT07343.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58]
          Length = 294

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  +
Sbjct: 51  GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 110

Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312
           +T +ILFI  GAF                    HV+ P +                   L
Sbjct: 111 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 170

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L+ S    IL + ++ L+ QY +L   E + L FT+D++ A+A 
Sbjct: 171 IPEFVGRLPVIATLEDLDVSALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 230

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 231 KAIERKT-----GARGLRSILEGILLDTMFDLPSMEGVGEVVVDKDVV 273


>gi|297739450|emb|CBI29632.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R            +   A++ +      
Sbjct: 127 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 186

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+  YVG +VE I+  L+ V
Sbjct: 187 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQASYVGEDVESILHKLLMV 246

Query: 110 A 110
           A
Sbjct: 247 A 247



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI   A     G  VS EGVQ+ LL ++EG+  +V  K G          I
Sbjct: 257 GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 316

Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311
           +T  ILFI  GA                  F     A+                      
Sbjct: 317 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 376

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++    + L FTE+
Sbjct: 377 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 436

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T ++DA  V
Sbjct: 437 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 485


>gi|255994400|ref|ZP_05427535.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           saphenum ATCC 49989]
 gi|255993113|gb|EEU03202.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           saphenum ATCC 49989]
          Length = 427

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +PREI + L  Y++GQ+ A++ +A+A+ N ++R Q      D   E+   N++++GPTG 
Sbjct: 67  TPREIDAILGDYVVGQERARKVLAVAVYNHYKRIQKDKKAEDKTVEVQKSNVIMIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 GKTLLAETLAKILKVPFAIADATTLTEAGYVGDDVENILLRLIQAA 172



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 60/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI        I   VS EGVQ+ LL ++EG+  +V    G           
Sbjct: 182 GIIYIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGTVANVPQTGGRKHPGQEMIPF 241

Query: 292 NTDHILFIASGAF------------------HVS----------------RPADLL---- 313
           NT  +LFI  GAF                  + S                R  DLL    
Sbjct: 242 NTSDVLFICGGAFDGLDKIIKRRQGGSAIGFNASDTKEENAYLENLYADLRHEDLLHYGL 301

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV+V L  L+++D   ILT+ ++ L+ QY++L K +G+ L F   ++  +A 
Sbjct: 302 IPEFIGRVPVKVSLDKLSETDLVKILTEPKNALVKQYEKLFKMDGVKLVFENSALIEIAR 361

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412
            A++ N+     GAR L+++ME  L D  F   SA ++++ TV
Sbjct: 362 EAISRNT-----GARGLRSIMEEALSDAMFEIPSAKNIEKCTV 399


>gi|254444637|ref|ZP_05058113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verrucomicrobiae bacterium DG1235]
 gi|198258945|gb|EDY83253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verrucomicrobiae bacterium DG1235]
          Length = 429

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 21/130 (16%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------- 43
           K  FN   P EI + LD+++IGQ+ AK+ +++A+ N ++R                    
Sbjct: 51  KPDFNLVKPTEIKAVLDQHVIGQEHAKKVLSVAVYNHYKRLGFEVAKPSDGESKEEAVLA 110

Query: 44  --PADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
             P++  D E+   NILLVGPTG GKT ++R LAR+   PF   + T  TE GYVG +VE
Sbjct: 111 APPSEYADVEVEKSNILLVGPTGSGKTFLARNLARILDVPFAIADATTLTEAGYVGDDVE 170

Query: 101 QIIRDLVDVA 110
            I+  L+  A
Sbjct: 171 NIVLRLLQSA 180



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 55/212 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ +            +Y  +
Sbjct: 190 GIIYVDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPNQEYIQV 249

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI  GAF                                   +P DL     +P
Sbjct: 250 DTSKILFICGGAFVGLESIIQKRSGGGTLGFGSDTKEELTGEQIMKNVQPEDLVKFGMIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L   D   IL  T++++I QY +L   +G+ L  T  ++ A+A+ A
Sbjct: 310 EFIGRLPVVSVLEMLTVGDLENILLSTKNSIIKQYAKLFSIDGVKLTLTSGAVKAIAEKA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           + L +     GAR L+++ME +  ++ +   D
Sbjct: 370 IELQT-----GARALRSIMENLTLEMMYEVPD 396


>gi|317050718|ref|YP_004111834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
 gi|316945802|gb|ADU65278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
          Length = 429

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62
           P EI   LD Y+IGQ+ +K+ +++A+ N ++R     D R       E+   NILL+GPT
Sbjct: 73  PSEIKESLDEYVIGQERSKKILSVAVYNHYKRIYSLLDSRGAEGEDVEISKSNILLIGPT 132

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 GSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLL 177



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +V  K G          I
Sbjct: 190 GIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTVANVPPKGGRKHPNQEFIQI 249

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PAD-----L 312
           +T +ILFI  GAF      V R                             P D     L
Sbjct: 250 DTTNILFICGGAFEGLDGIVGRRLGKKMLGFGQELSENRKLQKDELLAKVHPEDIIRYGL 309

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE+ GR PV   L+ LN++    IL + ++ L+ QY  ++  +   L FT ++   +A 
Sbjct: 310 IPELVGRLPVIAALEELNEAALIQILQEPKNALVKQYAHMLAMDSTELVFTPEACTEVAR 369

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDAEYVR 420
            A+   +     GAR L+++ME+V+ DI +   D +   K  +IDAE V+
Sbjct: 370 EALKRKT-----GARGLRSIMEQVMLDIMYDIPDQKGDRKRCIIDAEVVQ 414


>gi|195498060|ref|XP_002096364.1| GE25106 [Drosophila yakuba]
 gi|194182465|gb|EDW96076.1| GE25106 [Drosophila yakuba]
          Length = 672

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 622 HITADYVK 629



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382

Query: 109 VAINIVR 115
              N+ R
Sbjct: 383 ANYNVER 389


>gi|257463898|ref|ZP_05628284.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           D12]
 gi|317061427|ref|ZP_07925912.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12]
 gi|313687103|gb|EFS23938.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12]
          Length = 430

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNIL 57
             P EI  +LD Y+IGQ+ AK+ +A+A+ N ++R                  EL   N+L
Sbjct: 74  LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKGKDNNEVELQKSNVL 133

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 134 LIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAA 186



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG  S V  + G          I
Sbjct: 196 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKHPNQPLIEI 255

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311
           +T +ILFI  GAF                     +  P +                    
Sbjct: 256 DTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAPKEQMREGEFLSQVLPEDITKRG 315

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR P+  +L+ L++  F  ILT  ++ ++ QY++L + EG+ L+FTE++++ +A
Sbjct: 316 IIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQYQKLFQMEGVELEFTEEALEEVA 375

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422
            +A++       IGAR L++++E  + ++ +   SD   + V++  + V  H
Sbjct: 376 HLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSSIQKVILGKDAVLDH 422


>gi|225027522|ref|ZP_03716714.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353]
 gi|224955161|gb|EEG36370.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353]
          Length = 538

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 66/111 (59%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I ++LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 174 APHQIKAQLDEYVIGQDYAKKVMSVAVYNHYKRVITNTMDEIEIDKSNMLMIGPTGSGKT 233

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
            + + LARL   P    + T  TE GY+G +VE ++  L+  A N V ++ 
Sbjct: 234 HLVKTLARLLNVPLAICDATSLTEAGYIGDDVESVLSKLLANADNDVEKAE 284



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293
           GI+F+DE DKI  + +     VS E VQ+ LL L+EGS V    G+           +NT
Sbjct: 286 GIIFIDEIDKIAKKKNTTSRDVSGESVQQALLKLLEGSEVEVPVGASSKNAMVPTAVMNT 345

Query: 294 DHILFIASGAF-------------HVS--------------------------RPADLLP 314
            +ILFI  GAF             H S                          R   ++P
Sbjct: 346 RNILFICGGAFPGLEDIIKERMTQHSSIGFHAELKDKYDHEKNMLQYVTVEDIRKFGMIP 405

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L +L K     IL + ++ ++ QY++L+  + + L F + ++ A+A+ A
Sbjct: 406 EFIGRLPIIFTLNALTKEMLVDILKEPKNAILKQYQKLLALDEVDLQFEDGALTAIAEKA 465

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +       D GAR L+ ++E+ + DI +    D     V I  +Y+R
Sbjct: 466 ME-----KDTGARALRAIIEKFMLDIMYEIPKDDNIGRVTITEDYIR 507


>gi|332686389|ref|YP_004456163.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus
           plutonius ATCC 35311]
 gi|332370398|dbj|BAK21354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus
           plutonius ATCC 35311]
          Length = 416

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65
           P+EI+  L+ Y+I Q  AK+ +++A+ N ++R   +  D  +  EL   NI L+GPTG G
Sbjct: 64  PQEILDALNEYVISQDSAKKTLSVAVYNHYKRVNHIEEDSAENVELQKSNICLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 168



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 58/222 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237

Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313
           +T +ILFI  GAF                                 H+  P DLL     
Sbjct: 238 DTTNILFIVGGAFDGIDTIVKNRLGEKTIGFGQNSVVFNEEKSVMQHII-PEDLLKFGLI 296

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV   L+ L   D   ILT  ++ L+ QY++L+  +   L+F  +++  +A+ 
Sbjct: 297 PEFIGRLPVMAALEKLTTEDLVRILTVPKNALVKQYQKLLSLDDTELEFEPEALRVIANK 356

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414
           A+  N+     GAR L++++E ++ D+ F   S+   K VVI
Sbjct: 357 AIERNT-----GARGLRSIIEDIMMDVMFEIPSNETIKKVVI 393


>gi|301633000|ref|XP_002945567.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, partial [Xenopus (Silurana) tropicalis]
          Length = 350

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVGKTAISRRL 73
           LD Y+IGQ  AK+ +++A+ N ++R +    +D   E+   NILL+GPTG GKT +++ L
Sbjct: 2   LDDYVIGQDHAKKVLSVAVHNHYKRLEHAGRSDNDVEIAKSNILLIGPTGSGKTLLAQTL 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           AR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R
Sbjct: 62  ARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYKVERAQR 107



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 108 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKLMEGTIASVPPQGGRKHPQQDFLQV 167

Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313
           +T +ILFI  GAF      +S                              P DLL    
Sbjct: 168 DTTNILFICGGAFSGLEKIISARGKGNSIGFGADVRDPEARGTGEILREVEPEDLLKFGL 227

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+      IL+  ++ L+ QY+ L + E   L F ED++ A+AD
Sbjct: 228 IPEFVGRLPVLATLDDLDVDALMEILSKPKNALVKQYQRLFEIENARLIFQEDALKAIAD 287

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+   +     GAR L+ ++E +L D  F
Sbjct: 288 KAIKRKT-----GARGLRAIVEGILLDTMF 312


>gi|303287324|ref|XP_003062951.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455587|gb|EEH52890.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 371

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 61/221 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL +VEG  V+            ++  +
Sbjct: 136 GIVYIDEIDKLTRKAENVAITRDVSGEGVQQALLKMVEGCVVNVPEKGGRKNPRGEFTQV 195

Query: 292 NTDHILFIASGAFH--------------------------VSRPAD-------------- 311
           +T +ILF+  GAF                           V + AD              
Sbjct: 196 DTTNILFVCGGAFSGLETQVRHRRAESLVGRRPVRPRRRRVPKRADADDALERVEACDFI 255

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GRFPV V L+SLN+ +   +L      +  QY+ +MK  G+ L+FT+ ++ 
Sbjct: 256 AYGLIPEFVGRFPVAVPLRSLNEDELVRVLMTPRRAIGRQYQRMMKMLGVELEFTDGAMW 315

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           A A  A+  N+     GAR L+T++ER+L D  +    L E
Sbjct: 316 ATARAALRRNT-----GARGLRTLVERLLVDAMYEVPGLAE 351



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------------QQLPADLRD 49
           +P+E+V  LD +++GQ  AK+ +A+A+ N + R                     P +   
Sbjct: 6   TPKEMVKMLDEHVVGQTHAKKVLAVAVFNHYSRVRAEAEAASSSSSASSGAASCPTEAAW 65

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
                N++L GPTG GKT +++ LA     P +  + T  T+ GYVG +VE ++  L+  
Sbjct: 66  PADKSNVVLCGPTGCGKTLLAKTLASFVDVPIVIADATTLTQAGYVGEDVESLLYKLLQE 125

Query: 110 A 110
           A
Sbjct: 126 A 126


>gi|218197157|gb|EEC79584.1| hypothetical protein OsI_20758 [Oryza sativa Indica Group]
          Length = 495

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 17/120 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPADLRDE 50
           +P+EI   LD +++GQ  AK+ + +A+ N ++R                   +  D   E
Sbjct: 48  TPKEIRRGLDEFVVGQDKAKKVLCVAVHNHYKRIYSESSNCSMKSSACGDVSMSGDDDIE 107

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE II +L+  A
Sbjct: 108 LEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAA 167



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%)

Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GIV++DE DK++ +   N     VS EGVQ  LL + EG+           S+S  Y  +
Sbjct: 177 GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 236

Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311
           NT +ILFI  G+F              H+    P                          
Sbjct: 237 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 296

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L+++    +L + ++ +  QYK+L K   + L FTE+
Sbjct: 297 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 356

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419
           ++  +A  A +  +     GAR L+++ME +L +  F   D +E       V++D E V
Sbjct: 357 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 410


>gi|218961380|ref|YP_001741155.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
 gi|167730037|emb|CAO80949.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
          Length = 415

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65
           P  I + LD+Y+IGQ  AK  +++A+ N ++R   Q+   D+  +L   NIL++GPTG G
Sbjct: 59  PSRIKAYLDQYVIGQDSAKEIISVAVYNHYKRIFKQKYEDDV--DLEKSNILMIGPTGSG 116

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118
           KT I++ LAR    PF   + T  TE GYVG +VE I +R L +   ++ R  R
Sbjct: 117 KTLIAQTLARFLQVPFAISDATTLTEAGYVGEDVENILVRLLQNANYDVARAER 170



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 56/228 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  +
Sbjct: 171 GIVYIDEIDKISRKSETPSITRDVSGEGVQQALLKILEGTKVNVPPKGGRKHPQQDFIEM 230

Query: 292 NTDHILFIASGAFH--------------------------------VSRPADLL-----P 314
           +T +ILFIA GAF                                  + P DLL     P
Sbjct: 231 DTKNILFIAGGAFFGLEKIIKERMDKKSIGFDVELGKKQDESTIFDFTTPQDLLKYGLIP 290

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L  L++     IL   ++ +  QY++  + +G+ L+F+E+++  +A  A
Sbjct: 291 ELIGRMPVICTLHELSEDALIDILVKPKNAICKQYQKFFEMDGVRLEFSEEALKEIARTA 350

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +   +     GAR L+++ME+ +  I FS  D  + ++ +I  E V L
Sbjct: 351 IKQKT-----GARGLRSIMEKFMLKIMFSIPDRSDIESCIITPEVVTL 393


>gi|24648291|ref|NP_732463.1| CG4538, isoform B [Drosophila melanogaster]
 gi|23171759|gb|AAN13814.1| CG4538, isoform B [Drosophila melanogaster]
          Length = 673

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 623 HITADYVK 630



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383

Query: 109 VAINIVR 115
              N+ R
Sbjct: 384 ANYNVER 390


>gi|226942335|ref|YP_002797408.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter
           vinelandii DJ]
 gi|461755|sp|P33683|CLPX_AZOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|142368|gb|AAA64733.1| ORF 9 [Azotobacter vinelandii]
 gi|226717262|gb|ACO76433.1| Nitrogen fixation protein orf9, ClpX [Azotobacter vinelandii DJ]
          Length = 440

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVS-TKYGS-------- 290
            +GIV++DE DK+  R SG G  V   S EGVQ+ LL +VEG+ V  +K G         
Sbjct: 177 QWGIVYIDEVDKLAKR-SGGGTAVRDISGEGVQQALLKMVEGTEVRISKSGRRNEHSEEQ 235

Query: 291 -INTDHILFIASGAF--------------------HVSR---------------PADL-- 312
            ++T +ILFIA GAF                    H                  P DL  
Sbjct: 236 VVDTRNILFIAGGAFPGLEALVSSRIQPKNTGIGFHAQPRREAPSINELMASLLPDDLHE 295

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFP+   L+ L+ +    ILT+  + L+ QYK+L   +G+ L  T+ +++ 
Sbjct: 296 FGLIPEFIGRFPIITFLQELDHATLLRILTEPRNALVKQYKQLFAYQGVELVITDAALNY 355

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +AD A+     +   GAR L+ V+E  L+   F+
Sbjct: 356 IADQAL-----IRKTGARGLRAVLEAALQQTMFN 384



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILL 58
           +P E    LD  +IGQ+ AK  +++A+ N + R          QL   +  EL   NIL+
Sbjct: 60  TPVEYKKHLDESVIGQEAAKETLSVAVYNHYLRLLNCDREPVCQLGEQV--ELEKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
            GP+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L+D A   V++++
Sbjct: 118 AGPSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQAQ 177


>gi|226491966|ref|NP_001147507.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
 gi|195611856|gb|ACG27758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
          Length = 559

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD+++IGQQ AK+ +++A+ N ++R        +  AD              
Sbjct: 140 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLINRSAADCSQSDSCTSDTDMV 199

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 200 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLL 257



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 64/217 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + G+          I
Sbjct: 270 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 329

Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308
           +T +ILFI  GAF           H S                                 
Sbjct: 330 DTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESG 389

Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L SL++     +LT+ ++ L  QY +L +   + L FTE+
Sbjct: 390 DLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEE 449

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++  +A  A++ N+     GAR L++++E +L +  +
Sbjct: 450 ALRLIAKRAISKNT-----GARGLRSILESILTEAMY 481


>gi|24648289|ref|NP_650843.1| CG4538, isoform A [Drosophila melanogaster]
 gi|23171758|gb|AAF55713.2| CG4538, isoform A [Drosophila melanogaster]
 gi|189182138|gb|ACD81845.1| LD11650p [Drosophila melanogaster]
          Length = 673

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 623 HITADYVK 630



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383

Query: 109 VAINIVR 115
              N+ R
Sbjct: 384 ANYNVER 390


>gi|195353554|ref|XP_002043269.1| GM26887 [Drosophila sechellia]
 gi|194127383|gb|EDW49426.1| GM26887 [Drosophila sechellia]
          Length = 673

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447

Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311
               ++T +ILF+ASGA+                                  + P D   
Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 623 HITADYVK 630



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383

Query: 109 VAINIVR 115
              N+ R
Sbjct: 384 ANYNVER 390


>gi|195569578|ref|XP_002102786.1| GD20094 [Drosophila simulans]
 gi|194198713|gb|EDX12289.1| GD20094 [Drosophila simulans]
          Length = 673

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447

Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311
               ++T +ILF+ASGA+                                  + P D   
Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 623 HITADYVK 630



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383

Query: 109 VAINIVR 115
              N+ R
Sbjct: 384 ANYNVER 390


>gi|315453105|ref|YP_004073375.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
 gi|315132157|emb|CBY82785.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
          Length = 446

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS  +VS K G          I
Sbjct: 208 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHPNENFVQI 267

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T +ILFI  GAF                                H+  P DL+     P
Sbjct: 268 DTTNILFICGGAFDGIIDIIKRRIHSNVLGFGNEKKTKEQLEDILHLVGPEDLINYGLIP 327

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   LK ++K     IL   ++ LI QY++L K + + L F  ++I+ +A+ A
Sbjct: 328 ELIGRLPVISTLKPISKEAMVDILLKPKNALIKQYQQLFKMDDVDLVFEPEAIEEIANQA 387

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +        +GAR L++++E    D+ F    L++  VVI
Sbjct: 388 IKRK-----VGARGLRSIIESFSLDVMFDLPSLKDYQVVI 422



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 31/229 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD-----ELM 52
           SP  +   LD Y++GQ++AKR  ++A+ N ++R          Q++ A   +     E+ 
Sbjct: 81  SPNVLKEILDNYVVGQEEAKRVFSVAVYNHYKRLNHQEKQKQRQRIKASENESLDDVEIS 140

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILLVGPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 141 KSNILLVGPTGSGKTLMAQTLARFLNIPIAISDATSLTEAGYVGEDVENILTRLLQASDG 200

Query: 113 IVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISD 162
            V  ++R     DE+ + A ++    I   + G+       ++    +     + G    
Sbjct: 201 DVERAQRGIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHP 260

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209
            E  +++ DT++ +    I GGA  GI+++    + S V+G G +KK +
Sbjct: 261 NENFVQI-DTTNILF---ICGGAFDGIIDIIKRRIHSNVLGFGNEKKTK 305


>gi|301091465|ref|XP_002895917.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Phytophthora infestans T30-4]
 gi|262096081|gb|EEY54133.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Phytophthora infestans T30-4]
          Length = 705

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 61/234 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS V+            ++ +I
Sbjct: 447 GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITI 506

Query: 292 NTDHILFIASGAF-----HVSR--------------------------------PADL-- 312
           +T +ILFI  GAF      V+R                                P DL  
Sbjct: 507 DTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQAEPEDLVS 566

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFP+ V    L+K +   +L + +++L+ QYK L     +    TE +++A
Sbjct: 567 YGLIPEFIGRFPMLVSTTGLSKDELVQVLNEPKNSLVRQYKALFALSDVEFHATEGALEA 626

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +A+ A+  N+     GAR L+++ ER L +  F   D+ + + V +D E +  H
Sbjct: 627 VAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGH 675



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N++LVGPTG GKT +++ LARLA  P +  + T  T+ GYVG +VE ++  L   
Sbjct: 377 ELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQA 436

Query: 110 A 110
           A
Sbjct: 437 A 437


>gi|315641097|ref|ZP_07896176.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           italicus DSM 15952]
 gi|315483105|gb|EFU73622.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           italicus DSM 15952]
          Length = 416

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61
           P+E++  L+ Y+IGQ  AK+A+++A+ N ++R  + A+L         EL   NI L+GP
Sbjct: 64  PQELLKILNEYVIGQDRAKKALSVAVYNHYKR--ISANLDKSGEEEDVELQKSNICLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 122 TGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 170



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          +
Sbjct: 180 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEMIQL 239

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314
           +T +ILFI  GAF                                    P DLL     P
Sbjct: 240 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGSNNRKLPEKESTMKYIIPEDLLKFGLIP 299

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L   D   ILT+ ++ L+ QYK+L+  +   L F +D++ A+A  A
Sbjct: 300 EFIGRLPVMAALDKLTVDDLVRILTEPKNALVKQYKKLLSLDETELVFEDDALRAIAQKA 359

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +  N+     GAR L++++E ++ DI F     +E   VI
Sbjct: 360 IERNT-----GARGLRSIIEEIMMDIMFEVPSQEEIEKVI 394


>gi|166030630|ref|ZP_02233459.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC
           27755]
 gi|166029632|gb|EDR48389.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC
           27755]
          Length = 476

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 234 GIIFIDEIDKIAKKKNASQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 293

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 294 KNILFICGGAFPDLDSIIKERLTKQSAIGFGADLKDKYDHDKKILEKVTTEDLRNFGMIP 353

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L +  +  IL + ++ ++ QY++L+  + + LDFTE ++ A+A  A
Sbjct: 354 EFLGRLPVVFTLQGLTEDMYVKILEEPKNAILKQYQKLLALDEVKLDFTEGALRAIAKKA 413

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L+ ++E  + DI +    D     V I  EY+
Sbjct: 414 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITQEYI 454



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I + LD Y++GQ+ AK+ +++A+ N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 122 APHKIKASLDEYVVGQEYAKKVMSVAVYNHYKR--VATDSMDDIEIEKSNMLMIGPTGSG 179

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LAR+   P    + T  TE GY+G ++E ++  L+  A N V ++ +
Sbjct: 180 KTYLVKTLARILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 233


>gi|295395009|ref|ZP_06805221.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972168|gb|EFG48031.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 419

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           P++I   L+ +++GQ  AKRA+++A+ N ++R       D  D E+   NIL+VGPTG G
Sbjct: 63  PQDIFDHLNDFVVGQASAKRALSVAVYNHYKRINAMQSGDKPDVEIAKSNILMVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 KTYVAQTLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAA 167



 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 177 GIIYIDEIDKISRKAENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQL 236

Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADLL-----P 314
           +T ++LFI +GAF                           +V+      P DLL     P
Sbjct: 237 DTTNVLFIVAGAFAGLEEIISARKGKHGIGFGALIQSKEDNVNHFEDLLPEDLLKFGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L +L++     ILT+  + L+ QY+ +   +G+ L+F  ++++A+AD+A
Sbjct: 297 EFIGRVPVIATLDNLDREALIAILTEPRNALVKQYQAMFNMDGVELEFEHEALEAIADLA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +     + + GAR L++++E VL+ I F
Sbjct: 357 L-----LRETGARGLRSILEEVLQPIMF 379


>gi|255551247|ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223544165|gb|EEF45689.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 565

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 19/127 (14%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA--------DL 47
           L  NF +P+EI   LD+++IGQ  AK+ +++A+ N ++R      Q+  A        + 
Sbjct: 142 LGNNFPTPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHDSIQKWSAGDSGNNKAEA 201

Query: 48  RDE----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
            DE    L   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+
Sbjct: 202 MDEDGVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 261

Query: 104 RDLVDVA 110
             L+  A
Sbjct: 262 YKLLMAA 268



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 278 GIVYIDEVDKITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 337

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+  A            
Sbjct: 338 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRMGSVTSAAVTSSLLETVESG 397

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +L ++    +LT+ ++ L  QYK++ +  G+ L FTE+
Sbjct: 398 DLISYGLIPEFVGRFPVLVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTEN 457

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A+  N+     GAR L+ ++E +L D  +   D++    +IDA
Sbjct: 458 ALRLIAKKAITKNT-----GARGLRAILENILMDAMYEIPDVKTGEDIIDA 503


>gi|254797098|ref|YP_003081936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           risticii str. Illinois]
 gi|254590291|gb|ACT69653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           risticii str. Illinois]
          Length = 400

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR----RQQLPADLRDELMPKNILLVGPT 62
           F+P++I    D +I  Q+DAK+ +++A+ N ++     +    D+  E+   NIL++GPT
Sbjct: 58  FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGSRSNSKDV--EITKSNILIIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT  ++ LAR    PF   + T  TE GYVG +VE I+R L+  A
Sbjct: 116 GCGKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSA 163



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 173 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPNQETVQI 232

Query: 292 NTDHILFIASGAF-------------------------HVS-------RPADL-----LP 314
           +T +ILFI  GAF                          VS        P DL     +P
Sbjct: 233 DTTNILFICGGAFVGLDNIIANRRSINTMGFKSELQSKEVSPTILKKVEPEDLVKFGMIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L + +   IL+  ++ L+ QY  L   + I L F+++++  +A  A
Sbjct: 293 EFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSDEALKTVARAA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGD 425
           +        +GAR L+ +ME VL +  F   S+   KT++I  + VR  + +
Sbjct: 353 IKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEMAN 399


>gi|148657763|ref|YP_001277968.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus sp.
           RS-1]
 gi|148569873|gb|ABQ92018.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Roseiflexus
           sp. RS-1]
          Length = 436

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR +   LD+Y+IGQ  AK  +++A+ N ++R +   +  D E+   NILL+GPTG GK
Sbjct: 77  TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQNADDVEIGKSNILLIGPTGSGK 136

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 180



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG                +Y S 
Sbjct: 190 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGCVAHVPPVPGRKHPQQEYISF 249

Query: 292 NTDHILFIASGAF-------------------HVSR----PADLL--------------P 314
           +T H+LFI  GAF                   H       PA LL              P
Sbjct: 250 DTTHVLFICGGAFEGLDKIISQRIGGKRSIGFHAGESSDAPASLLSQVTPDDLLRYGFIP 309

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L+K     ILT+  + +I QY++++  + + L+ T D+++A+A+ A
Sbjct: 310 EFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDALEAIAERA 369

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   +     GAR L+T++E +L D+ +     +     +I+AE V
Sbjct: 370 LRSKT-----GARALRTIVEEILLDVMYEVPSQEHIGRCIINAEVV 410


>gi|329770553|ref|ZP_08261931.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           sanguinis M325]
 gi|328836302|gb|EGF85971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           sanguinis M325]
          Length = 403

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           FN   P EI++ L+ Y+I Q  AK++VA+A+ N ++R +      + +L   NI L+G T
Sbjct: 58  FNLLKPHEIMTHLNEYVISQDKAKKSVAVAVYNHYKRIKAKQSNENIDLQKSNIALIGST 117

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 118 GSGKTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNA 165



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPGEEMIKI 234

Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315
           NT  ILFI  GAF                  S+  +L                    +PE
Sbjct: 235 NTKDILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELNDTGAIISKVKHEDLVKFGIIPE 294

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV  +L+ LN++D   +LT+ ++++I QY+ L   + + L F +D++  +A  ++
Sbjct: 295 FIGRIPVICYLEELNENDLVRVLTEPKNSVIKQYQYLFSLDNVDLIFEKDALVEIARESI 354

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              +     GAR L++++E +L D+ +     +  KT  I  E V
Sbjct: 355 KRKT-----GARGLRSIIEELLLDVMYDIPSKENIKTCTITRENV 394


>gi|194899883|ref|XP_001979487.1| GG15775 [Drosophila erecta]
 gi|190651190|gb|EDV48445.1| GG15775 [Drosophila erecta]
          Length = 672

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446

Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311
               ++T +ILF+ASGA+                                  + P D   
Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 622 HITADYVK 629



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382

Query: 109 VAINIVR 115
              N+ R
Sbjct: 383 ANYNVER 389


>gi|224132768|ref|XP_002321405.1| predicted protein [Populus trichocarpa]
 gi|222868401|gb|EEF05532.1| predicted protein [Populus trichocarpa]
          Length = 403

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRD---- 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R  L               +D+ D    
Sbjct: 12  TPKEICKALDNFVIGQRRAKKVLSVAVYNHYKRIYLESVKKWSNTDSGNEKSDIMDDDGV 71

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+  YVG +VE I+  L+  
Sbjct: 72  ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLTA 131

Query: 110 A 110
           A
Sbjct: 132 A 132



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 142 GIIYIDEIDKITKKAESVNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 201

Query: 292 NTDHILFIASGAF-----------------------------------------HVSRPA 310
           +T  ILFI  GAF                                           +  +
Sbjct: 202 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSTAVTSSLLETAESS 261

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE  GRFP+ V L +L +     +LT+ ++ L  QYK+L +   + L  TE+
Sbjct: 262 DLVSYGLIPEFVGRFPILVSLAALTEDQLVQVLTEPKNALGKQYKKLFQMNDVKLHVTEN 321

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++ ++A  A+  N+     GAR L++++E +L D  +   D++    +IDA
Sbjct: 322 ALRSIARKAITKNT-----GARALRSILENILMDSMYEIPDVRTGDDIIDA 367


>gi|328955402|ref|YP_004372735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium
           glomerans PW2]
 gi|328455726|gb|AEB06920.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium
           glomerans PW2]
          Length = 470

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 24/127 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------QQLPADLR 48
           +P E+   L  Y++GQ DAKRA+++A+ N +RR                   Q   A  R
Sbjct: 97  TPHELFEGLSAYVMGQDDAKRALSVAVYNHYRRVLEGGAAEGAHDESDGAAGQDSVAKSR 156

Query: 49  D-----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
                 EL   NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+
Sbjct: 157 GGLAEVELAKSNILLLGPTGTGKTLLAQTLARILEVPFALADATALTEAGYVGEDVENIL 216

Query: 104 RDLVDVA 110
             L+  A
Sbjct: 217 LKLITAA 223



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV    G          I
Sbjct: 233 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKILEGTLASVPPAGGRKHPQQELLHI 292

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                      PADL     
Sbjct: 293 DTTNILFICGGAFVGLDKIIADRVGNKGIGFNSEIAGPTSIDENDLLRQVLPADLNAFGM 352

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV     +  + D   ILT+  + ++ QY+ + + EG  L F  D++  +A 
Sbjct: 353 IPEFVGRTPVITETSAFTEDDLVSILTEPRNAIVKQYRRMFELEGCELVFDPDALHEIAR 412

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +A+     V   GAR L+++ E +L+   F   S+     V+I    VR
Sbjct: 413 LAL-----VRKTGARGLRSICENLLQQTMFDLPSEHDVSQVIITGAAVR 456


>gi|223938521|ref|ZP_03630413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium
           Ellin514]
 gi|223892783|gb|EEF59252.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium
           Ellin514]
          Length = 432

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 18/133 (13%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLR 48
           FN   P +I  +LDR+ IGQ  AK+ +A+A+ N ++R               + L AD  
Sbjct: 58  FNIPKPIDIKRQLDRHCIGQDHAKKTLAVAVHNHYKRILHEPGAQANETEGAEDLAADRH 117

Query: 49  DE--LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
            E  +   NIL+VGPTG GKT ++R LA++   PF   + T  TE GYVG +VE II  L
Sbjct: 118 AEVEIEKSNILMVGPTGSGKTLLARTLAQILDVPFAIADATTLTEAGYVGEDVENIILRL 177

Query: 107 VDVAINIVRESRR 119
           +  A   V+ ++R
Sbjct: 178 LQNADYDVKRAQR 190



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 59/212 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  +
Sbjct: 191 GIVYIDEIDKIARKTENVSITRDVSGEGVQQALLKILEGTICNVPPQGGRKHPQQEYIRV 250

Query: 292 NTDHILFIASGAF-------------HVS-----------------------RPADLL-- 313
           +T HILFI  GAF             HV                         P DLL  
Sbjct: 251 DTSHILFICGGAFVGLEKVIHRRLGKHVMGFNAVEQGHKAASVDRLQILQHIEPEDLLSF 310

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L +     ILTD ++ L+ Q+ +L+  EG+ L+F+ED++  L
Sbjct: 311 GFIPEFIGRLPMMTVLSELTEDQLVSILTDPKNALVKQFGKLLAMEGVELEFSEDALREL 370

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +  A+   +     GAR L+ ++ER++ D+ +
Sbjct: 371 SFQALKKGT-----GARALRGLLERIMLDVMY 397


>gi|15292275|gb|AAK93406.1| LD45279p [Drosophila melanogaster]
          Length = 478

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 199 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 252

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 253 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 312

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 313 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 372

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 373 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 427

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 428 HITADYVK 435



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 129 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 188

Query: 109 VAINIVR 115
              N+ R
Sbjct: 189 ANYNVER 195


>gi|27374215|gb|AAO00979.1| CG4538-PA [Drosophila erecta]
          Length = 672

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446

Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311
               ++T +ILF+ASGA+                                  + P D   
Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 622 HITADYVK 629



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382

Query: 109 VAINIVR 115
              N+ R
Sbjct: 383 ANYNVER 389


>gi|324511044|gb|ADY44609.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
           [Ascaris suum]
          Length = 545

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 71/238 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A  +        VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 293 GIVFLDEIDKIAAAHNTQSHAYRDVSGEGVQHALLKLVEGTVVNVKSGRKTVATQQDTVQ 352

Query: 291 INTDHILFIASGAFH-----------------------------------VSRPAD---- 311
           ++T  +LF+ASGAF                                    V+R  D    
Sbjct: 353 VDTSDVLFVASGAFTALDRIVGKRLDQKMLGFGAKSGNQRITADDKMESIVARKRDELLQ 412

Query: 312 -----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      ++PE+ GRFPV V   S +K+    +LT+  ++L+ Q K     +G+ L
Sbjct: 413 QADQGDLISFGIVPELVGRFPVIVPFHSFDKNMLVRVLTEPANSLLAQMKLQFAIDGVDL 472

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
            F++D+++ +A++A+   +     GAR L++++E+VL +  F    SD++   V  D 
Sbjct: 473 SFSQDALEEIAEMALERKT-----GARALRSIVEKVLLEAKFLVPGSDIESVHVTRDC 525



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GP+GVGKT +++ LAR+   P    + T  T+ GYVG +VE +I+ LV  A
Sbjct: 228 NILLLGPSGVGKTFVTQTLARILDVPIALCDCTSMTQAGYVGEDVESVIQKLVQNA 283


>gi|240256421|ref|NP_568714.4| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           / protein binding [Arabidopsis thaliana]
 gi|332008480|gb|AED95863.1| ATP-dependent Clp protease [Arabidopsis thaliana]
          Length = 608

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 18/130 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R            +    D+ D      
Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF   + T  T+  YVG +VE I+  L   
Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQASYVGEDVESILYKLYVE 318

Query: 110 AINIVRESRR 119
           A   V E++R
Sbjct: 319 AGCNVEEAQR 328



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 72/242 (29%)

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------- 289
           GIV++DE DK+   +  S  G  VS EGVQ+ LL L+EG+ VS                 
Sbjct: 329 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVSVPIPEKGLRRDPRGDSI 388

Query: 290 SINTDHILFIASGAF-----------------------------HVSRPA---------- 310
            ++T  ILFI  GAF                              +S  A          
Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448

Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P+ V L +LN+     +LT+ +S L  QYK+L +   + L FT
Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAE 417
           E +   +A  A++ N+     GAR L++++E +L +  F   D + E     K V++D E
Sbjct: 509 EGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEE 563

Query: 418 YV 419
            V
Sbjct: 564 AV 565


>gi|311741279|ref|ZP_07715103.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303449|gb|EFQ79528.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 431

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 14/115 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLPADLRDELMPKN 55
           P +I + LD+Y+IGQ  AKR +++A+ N +             RR++   D   E+   N
Sbjct: 68  PSQISAFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGD-EVEISKSN 126

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           IL++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGL 310

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+ +++L+ QY  L + +   LD    ++DA+A+
Sbjct: 311 IPEFIGRLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAE 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A+   +     GAR L+ +ME +L  + +   D ++  TV I  E V
Sbjct: 371 LALERKT-----GARGLRAIMEELLVPVMYDLPDREDIATVHITRECV 413


>gi|282851695|ref|ZP_06261060.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 224-1]
 gi|282557663|gb|EFB63260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 224-1]
          Length = 357

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGKTA 68
           EI  +LD Y+IGQ  AK+ +++A+ N ++R  Q+  D    EL   NI L+GPTG GKT 
Sbjct: 2   EIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTY 61

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 62  LAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 103



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 113 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 172

Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313
           +T +ILFI  GAF               +   A+                        L+
Sbjct: 173 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 232

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L+  D   ILT+ ++ L+ QYK+L+  + + L+FTE ++ A+AD+
Sbjct: 233 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 292

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A++ +     +GAR L++++E  L D+ +
Sbjct: 293 AISRH-----MGARGLRSIVENSLMDVMY 316


>gi|294670435|ref|ZP_06735317.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307899|gb|EFE49142.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 336

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  SV  + G          +
Sbjct: 92  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 151

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +ILFI  GAF                                    +  P DL+   
Sbjct: 152 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISELFEIVEPEDLIKFG 211

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   EG  L+F  D++ A+A
Sbjct: 212 LIPELIGRLPVIATLAELDEDALINILTEPKNALVKQYQALFAMEGAELEFEPDALRAIA 271

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
            +A+   +     GAR L++++ER L +  +   +L Q K  VI AE +
Sbjct: 272 KLAMTRKT-----GARGLRSIVERALLETMYRLPNLPQVKKAVITAEVI 315



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 30  VAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88
           +A+A+ N ++R + P A    EL   NILL+GPTG GKT +++ LAR    PF+  + T 
Sbjct: 1   MAVAVYNHYKRLRHPKAGGAVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATT 60

Query: 89  FTEIGYVGRNVEQIIRDLV 107
            TE GYVG +VEQII  L+
Sbjct: 61  LTEAGYVGEDVEQIITKLL 79


>gi|255573808|ref|XP_002527823.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223532747|gb|EEF34526.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 603

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD ++IGQ  AK+ +A+A+ N ++R       ++  AD+             
Sbjct: 183 TPKEICKGLDEFVIGQDRAKKVLAVAVYNHYKRIYHGSKRKESGADMGYTDSQNDDNEIV 242

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 243 ELDKSNVLLMGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILYKLL 300



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 66/233 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYG------------- 289
           GI+++DE DKI  +   + IG  VS EGVQ+ LL ++EG+ V+                 
Sbjct: 313 GIIYIDEVDKITKKAESSNIGRDVSGEGVQQALLKMLEGTIVNVPVPDKGPRKHPRGDPI 372

Query: 290 SINTDHILFIASGAF--------------------------HVSRPAD------------ 311
            I+T  ILFI  GAF                             R  D            
Sbjct: 373 QIDTKDILFICGGAFVDLEKTISERRQDASIGFGAPVRTNMRTGRMIDAVVASSLLESVE 432

Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GRFP+ V L +LN+     +L + ++ L  QYK++     + L FT
Sbjct: 433 SGDLVAYGLIPEFVGRFPILVSLSALNEDQLVQVLVEPKNALGKQYKKMFSMNDVKLHFT 492

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++++  +A  A+  N+     GAR L+ ++E +L +  +   + +  +  I A
Sbjct: 493 DEALRLIAKKAMAKNT-----GARGLRAILESILTEAMYEIPENKTGSNCISA 540


>gi|225569252|ref|ZP_03778277.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM
           15053]
 gi|225162051|gb|EEG74670.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM
           15053]
          Length = 479

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 13/153 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P  I + LD Y++GQ+ AK+ +++ + N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 128 APHRIKASLDEYVVGQEYAKKVMSVGVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 185

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ
Sbjct: 186 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQ 239

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158
             I  +E  +D +  K  TS  R+V  + ++ G
Sbjct: 240 GIIFIDE--IDKIAKKKNTSQ-RDVSGESVQQG 269



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 56/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 240 GIIFIDEIDKIAKKKNTSQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 299

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 300 RNILFICGGAFPDLEGIIKERLTKQSSIGFGADLKDKYDHDKTILEKVTVEDLRNFGMIP 359

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ L++     IL + ++ ++ QY++L+  + + LDF E ++ A+A  A
Sbjct: 360 EFIGRLPIIFTLRGLDQDMLVKILKEPKNAILKQYQKLLALDEVKLDFDEGALQAIAGKA 419

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           +       D GAR L+ ++E  + DI +    D     V I  EY+
Sbjct: 420 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITKEYI 460


>gi|258646881|ref|ZP_05734350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           invisus DSM 15470]
 gi|260404320|gb|EEW97867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           invisus DSM 15470]
          Length = 412

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I   +D+Y+I Q DAK A+A+A+ N ++R +   D    EL   NI+++GPTG GK
Sbjct: 64  TPEKIKEYMDQYVIEQDDAKVALAVAVYNHYKRIRYEKDDDGVELQKSNIIMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 TLLAQTLARFLNVPFAISDATTLTEAGYVGEDVENILLRLIQAA 167



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 57/217 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 177 GIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMIQL 236

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T +ILFI  GAF      ++R                             P DLL    
Sbjct: 237 DTSNILFICGGAFAGIDKVIARRTTRSTMGFGADIKKADEKDIAEVLQNVEPEDLLKFGL 296

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV V L  L +     IL++ ++ LI QY++L+  + + L F   ++ A+A 
Sbjct: 297 IPEFIGRLPVIVALHPLKEEALIRILSEPKNALIRQYQKLLGMDNVELVFEGKAVRAIAK 356

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            A+  N+     GAR L+ ++E+++  + +    +++
Sbjct: 357 KAIERNT-----GARGLRAIIEKIMTKVMYEIPGMKD 388


>gi|281414009|ref|ZP_06245751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 358

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 116 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 175

Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314
           +T ++LFI +GAF                       H+          RP DLL     P
Sbjct: 176 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 235

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   ++ L       +LT+ ++ L+ QY+++   +G+ L+F +D++DA+   A
Sbjct: 236 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 295

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420
               +     GAR L+++ME VL+ + F   S SD+   TVVI  + VR
Sbjct: 296 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGDVVR 337



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 15/106 (14%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK-----------NILLVGPTGV 64
           +IGQ+ AKR++A+A+ N ++R + P     DL D L  +           NIL+VGPTG 
Sbjct: 1   MIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVGKSNILMVGPTGS 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 61  GKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 106


>gi|241889844|ref|ZP_04777142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella
           haemolysans ATCC 10379]
 gi|241863466|gb|EER67850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella
           haemolysans ATCC 10379]
          Length = 402

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I+  L+ Y+I Q  AK++VA+A+ N ++R     +   EL   NI L+G TG GK
Sbjct: 61  LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIIAKENNDIELQKSNIALIGSTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSA 164



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 57/223 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 174 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPGEEMIKI 233

Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315
           NT +ILFI  GAF                  S+  +L                    +PE
Sbjct: 234 NTKNILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELNDNEDIISKVKHEDLVKFGMIPE 293

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV  +L+ L++ D   +LT+ +++++ QY+ L + +G+ L F +++++ +A  ++
Sbjct: 294 FIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFELDGVKLVFEKEALEEIAKESI 353

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
              +     GAR L++++E +L D+ F   S  D++  TV  D
Sbjct: 354 KRKT-----GARGLRSIIEELLLDVMFEIPSKKDIKTCTVTRD 391


>gi|114319436|ref|YP_741119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225830|gb|ABI55629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 415

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNR-----WRRQQLPADLRDELMPKNILLVGPT 62
           +PR++ + LD Y+IGQ+ AKR +A+A+ N      WR  + P     E+   NIL+VGPT
Sbjct: 71  TPRQLHAHLDGYVIGQERAKRQLAVAVYNHYKRLIWRGARRPG----EVAKSNILMVGPT 126

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +   LAR    PF+  + + FT  GY G +V+ I   L++ A      +RR  V
Sbjct: 127 GSGKTLLLESLARHLEVPFVTADASTFTAAGYAGADVDDIAVRLLEAAGGDPAAARRGMV 186



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 44/163 (26%)

Query: 245 GIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSINTD 294
           G+VFLDE DK+  R    SGNG   S EGVQ+ LL L+EG  V+           S++T 
Sbjct: 184 GMVFLDEVDKLACRAPGGSGNGRDFSGEGVQQALLRLLEGRVVNVPRRGRGGGVHSVDTR 243

Query: 295 HILFIASGAFHVSR------------------------PA----------DLLPEIQGRF 320
            +LF+  GAF   R                        PA           L+PE+ GR 
Sbjct: 244 DVLFVCGGAFQGLRQQMAGRRAGGGVGFGARLAETAEPPAVPDADDLVHYGLIPELVGRL 303

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           PV   L++L+++    +++   + L+ QY+ L + +G  L FT
Sbjct: 304 PVVTTLEALSEAQLLEVISRPRNALLRQYQALFRQDGCELHFT 346


>gi|268678828|ref|YP_003303259.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616859|gb|ACZ11224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 412

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 4   TFN---FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNIL 57
           +FN    +P+E+   LD ++IGQ  AK+  ++ + N ++R   Q + +D   E+   NIL
Sbjct: 56  SFNPTLLTPKELKKVLDDFVIGQDQAKKVFSVGVYNHYKRIFKQSMMSD-DTEISKSNIL 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++
Sbjct: 115 LIGPTGSGKTLMAQTLARFLDVPIAISDATSLTEAGYVGEDVENILTKLLQCANGDVKKA 174

Query: 118 RR 119
            +
Sbjct: 175 EQ 176



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 55/226 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+            ++  I
Sbjct: 177 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIQI 236

Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314
           +T +ILF+ +GAF                                 +  P DL     +P
Sbjct: 237 DTTNILFVCAGAFDGLEEIIKRRIGKNVLGFEQEKRSKSQDNGLFDLVEPDDLVHYGLIP 296

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  V   L  + K D   ILT+ ++ +  QY++L   + + L F +++++A+A++A
Sbjct: 297 ELIGRLHVTAKLSPITKEDMVRILTEPKNAIYKQYQKLFGIDNVELTFEKEALEAVAELA 356

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +   +     GAR L+++ME ++ D+ +   +L+   V++  + V+
Sbjct: 357 IKRKT-----GARGLRSIMEELMVDVMYELPELEGYEVIVTKDAVQ 397


>gi|88608107|ref|YP_506628.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|123491542|sp|Q2GD18|CLPX_NEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600276|gb|ABD45744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           sennetsu str. Miyayama]
          Length = 400

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPT 62
           F+P++I    D +I  Q+DAK+ +++A+ N ++     +L +  +D E+   NIL++GPT
Sbjct: 58  FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGNRLNS--KDVEITKSNILIIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT  ++ LAR    PF   + T  TE GYVG +VE I+R L+  A
Sbjct: 116 GCGKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSA 163



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 173 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPNQETIQI 232

Query: 292 NTDHILFIASGAF-------------------------HVS-------RPADL-----LP 314
           +T +ILFI  GAF                          VS        P DL     +P
Sbjct: 233 DTTNILFICGGAFVGLDNIIANRQSINTMGFKSELQSKEVSPTILKKVEPEDLVKFGMIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L  L + +   IL+  ++ L+ QY  L   + I L F+++++  +A  A
Sbjct: 293 EFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSDEALKTVARAA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGD 425
           +        +GAR L+ +ME VL +  F   S+   KT++I  + VR  + +
Sbjct: 353 IKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEMAN 399


>gi|118474538|ref|YP_891518.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413764|gb|ABK82184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 406

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 55/220 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           G+VF+DE DKI        I   VS EGVQ+ LL ++EGS+V+             +  I
Sbjct: 174 GVVFVDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSTVNIPPKGGRKHPNQDFIQI 233

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILF+  GAF                    + R  D                  L+P
Sbjct: 234 DTTNILFVCGGAFDGLNEIIERRIGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR      L  +   D   ILT+ ++ L+ QY++L   +G  L F  D+I  +A  A
Sbjct: 294 ELIGRLHAIATLNEITTDDMVKILTEPKNALLKQYQKLFAIDGANLKFDNDAIKEVATQA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +N  +     GAR L+++ME ++ DI F+  DL+   V+I
Sbjct: 354 INRKT-----GARGLRSIMEDIMMDIMFNLPDLKGYDVII 388



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTG 63
           + +P+ +   LD Y+IGQ+ AK+  ++ + N ++R  +Q   +   E+   NILL+GPTG
Sbjct: 58  DITPKLLKDVLDSYVIGQEKAKKVFSVGVYNHYKRIFKQDAIEDDTEISKSNILLIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+ +++
Sbjct: 118 SGKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTKLLSAAGGDVQRAQQ 173


>gi|222622641|gb|EEE56773.1| hypothetical protein OsJ_06335 [Oryza sativa Japonica Group]
          Length = 479

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD----------- 49
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R            D  +           
Sbjct: 61  TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 120

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 121 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 178



 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + G+          I
Sbjct: 191 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 250

Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308
           +T +ILFI  GAF           H S                                 
Sbjct: 251 DTKNILFICGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLLESVESG 310

Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L SL++     +LT  ++ L  QY +L +   + L FTE 
Sbjct: 311 DLIAYGLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEK 370

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  ++  A+  N+     GAR L++++E +L +  +   +++     IDA
Sbjct: 371 ALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 416


>gi|113955227|ref|YP_729302.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CC9311]
 gi|122945884|sp|Q0IE20|CLPX_SYNS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113882578|gb|ABI47536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. CC9311]
          Length = 451

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI   LD  ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 85  PQEIKGFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGEAAQTATRLHKSNILLIGP 144

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 145 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQR 202



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 65/239 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                        H+  P D
Sbjct: 263 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPNDGRGRNRATRDIQAAQVLRHL-EPDD 321

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L++     ILT+    L+ Q+  L+  + + LDF   +
Sbjct: 322 LVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFSTLLSMDNVQLDFEAQA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424
           ++A+A  A    +     GAR L+ ++E ++ D+ +   SD       I    V  H G
Sbjct: 382 VEAIAKEAHRRKT-----GARALRGIVEELMLDLMYELPSDQNVTAFTITKAMVEEHTG 435


>gi|242059473|ref|XP_002458882.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor]
 gi|241930857|gb|EES04002.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor]
          Length = 623

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRD----- 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R               LP    D     
Sbjct: 206 TPREMCRRLDEFVIGQAKAKKVLSVAVYNHYKRIYNANVQKESAANSGLPDAGHDDQNIV 265

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I++ L+  
Sbjct: 266 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLLVA 325

Query: 110 A 110
           A
Sbjct: 326 A 326



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 73/241 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + GS          I
Sbjct: 336 GIVYIDEIDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNDSIQI 395

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                               S P             
Sbjct: 396 DTTDILFICGGAFVDLEKTISERRQDSSIGFGAPVRTNMRSSGASCPMVTSTLLESVESG 455

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ 
Sbjct: 456 DLVRYGLIPEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQYRKMFNLNKVRLHFTDG 515

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418
           ++  +A  A+  ++     GAR L+ ++E VL +  +   D  EKT       VV+D E 
Sbjct: 516 ALRLVAKKAIAKST-----GARGLRAILETVLLEAMYEIPD--EKTGNERVDAVVVDEEA 568

Query: 419 V 419
           +
Sbjct: 569 I 569


>gi|238917542|ref|YP_002931059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
 gi|238872902|gb|ACR72612.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
          Length = 468

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 6/116 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTG 63
           +P EI  +LD Y+IGQ  AK+ +++A+ N ++R  + AD R     E+   N+L++GPTG
Sbjct: 122 APHEIKRKLDEYVIGQDYAKKVMSVAVYNHYKR--VSADARILGDVEIEKSNMLMIGPTG 179

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT + + LAR+   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 180 SGKTYLVKTLARILQVPLAITDATTLTEAGYIGDDIESVVSKLLLAADNDVEKAEH 235



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 55/209 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  +       VS E VQ+ +L L+EGS +    G           ++N
Sbjct: 235 HGIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSEIEVPVGATSKNAMVPQVTVN 294

Query: 293 TDHILFIASGAF-----------------------------------HVS----RPADLL 313
           T  ILFI  GAF                                   +V+    R   ++
Sbjct: 295 TKDILFICGGAFPDLEDIIKTRLNKSSSMGFNADLKDKYDDEKNIMSYVTVDDLREYGMI 354

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L++     IL + ++ ++ QY++L++ + + L+FT+D++ ++A  
Sbjct: 355 PEFLGRLPIIYSLDRLDEDMLVNILKEPKNAILKQYQKLLELDEVKLEFTDDALRSIARK 414

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+       D GAR L++++E  + DI +
Sbjct: 415 AME-----KDTGARALRSIIEDFMLDIMY 438


>gi|209525223|ref|ZP_03273766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
 gi|209494408|gb|EDZ94720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
          Length = 456

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 15/117 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELMP 53
           P EI   LD+++IGQ + K+ +++A+ N ++R  + A               D + EL  
Sbjct: 81  PVEIKQYLDKHVIGQNNTKKVLSVAVYNHYKRLSVDAGNISNQDFDETQGYSDEQVELQK 140

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT ++  LA+L   PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 141 SNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 197



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 63/216 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 207 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQI 266

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                            P D
Sbjct: 267 DTSKILFICGGAFVGLDKLVEQRMGKKSLGFIQPGVKPGEEVQKTSVDTTEILQNVEPQD 326

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   +  L++     ILT+  + L+ QYK+L+K + + L+F  D+
Sbjct: 327 LVKFGLIPEFIGRVPVLTVISPLDEEALVKILTEPHNALVKQYKQLLKMDNVSLEFEPDA 386

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A    +     GAR L+ ++E ++ ++ +
Sbjct: 387 LIAIAKEAYRRKT-----GARALRGILEELMLEVMY 417


>gi|284097336|ref|ZP_06385466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283831155|gb|EFC35135.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 419

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 59/102 (57%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI   LD+YII Q  AK+ +++A+ N ++R         EL   NIL++GPTG GKT 
Sbjct: 64  PAEINRHLDQYIIDQTRAKKILSVAVHNHYKRIAASETGDVELQKGNILMIGPTGTGKTL 123

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LA     PF   + T  TE GYVG +VE II  L+  A
Sbjct: 124 LAQTLADYLDVPFTLADATTLTEAGYVGEDVENIILKLLQAA 165



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 57/233 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 175 GIIYIDEIDKITRKADGPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQEFIQV 234

Query: 292 NTDHILFIASGAF----------------------HVS---RPADLLPEIQ--------- 317
           +T +IL I  GAF                       VS   RP+ LL +IQ         
Sbjct: 235 DTKNILVICGGAFVGLEPIIERRLNQNRMGFKSDKSVSAQERPSSLLAQIQPEDLLHYGL 294

Query: 318 -----GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
                GR PV   L+ L++     IL + ++ L  QY++L+  + + L FT+ ++ A+A 
Sbjct: 295 IPEFIGRLPVVTTLEELDERALTRILIEPKNALTKQYQKLLSFDKVKLKFTDGALHAIAS 354

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            A    +     GAR L+ +ME V+ DI +      E   V+  E V L  G+
Sbjct: 355 KAHAQKT-----GARGLRAIMEEVMLDIMYEVPSQTEIKEVVITEDVILKKGE 402


>gi|255325487|ref|ZP_05366589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium tuberculostearicum SK141]
 gi|255297425|gb|EET76740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium tuberculostearicum SK141]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 14/115 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLPADLRDELMPKN 55
           P +I + LD+Y+IGQ  AKR +++A+ N +             RR++   D   E+   N
Sbjct: 68  PSQISAFLDKYVIGQDRAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGD-EVEISKSN 126

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           IL++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 127 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 58/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  +
Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI +GAF                                     RP DL     
Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGL 310

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   + +L++     +LT+ +++L+ QY  L + +   LD    ++DA+A+
Sbjct: 311 IPEFIGRLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAE 370

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A+   +     GAR L+ +ME +L  + +   D ++  TV I +E V
Sbjct: 371 LALERKT-----GARGLRAIMEELLVPVMYDLPDREDIATVHITSECV 413


>gi|289449742|ref|YP_003475568.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184289|gb|ADC90714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 440

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ +AK+ + +A+ N ++R     Q      D  +L   N++L+GP
Sbjct: 77  SPKEMKAILDEYVIGQDEAKKTLCVAVYNHYKRVFRDPQSETAKEDTVQLDKSNVMLIGP 136

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A   + +++R
Sbjct: 137 TGCGKTLLASTLAKILHVPFAIADATALTEAGYVGEDVENILLRLIQNANFDIAQAQR 194



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  R     I   VS EGVQ+ LL ++E +  +V  + G          I
Sbjct: 195 GIIYIDEIDKITRRSDNPSITRDVSGEGVQQALLKILESTIANVPPQGGRKHPHQEFIQI 254

Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313
           +T +ILFI  GAF           +R                         P DLL    
Sbjct: 255 DTTNILFICGGAFDGLDKIIRRRTNRKSIGFGAEIGSNSSLDDDDVLSQLEPRDLLKFGL 314

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR P+ V LK+L++     +L++ +++LI QYK L++ +G+ L+FT ++I+ +A 
Sbjct: 315 IPEFIGRVPINVTLKALDQQQLIKVLSEPKNSLIKQYKYLLELDGVDLEFTPEAINEIAA 374

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+   +     GAR L+ +ME ++ D+ +      + K  VI A  VR
Sbjct: 375 AAIKRKT-----GARGLRAIMEEIMLDVMYELPSRHDIKKCVIGASVVR 418


>gi|254458150|ref|ZP_05071576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
 gi|207084986|gb|EDZ62272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
          Length = 414

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
            +P+E+ + L  YIIGQ+ A++ +++A+ N ++R     ++ D   E+   N+LL+GPTG
Sbjct: 62  MTPKELNNFLGDYIIGQERARKLLSVAVYNHYKRIFKTKNITDDDTEIAKSNVLLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A
Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAA 168



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DK+        I   VS EGVQ+ LL +VEG+ V+            ++ SI
Sbjct: 178 GIVFIDEVDKVSRMSENRSITRDVSGEGVQQALLKIVEGAEVNIPPKGGRKHPNQEFTSI 237

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                   H  +  D                  L+P
Sbjct: 238 DTTNILFICGGAFDGLDEILKRKQGNNVLGFGHDKKSKDEQKITYDMVEPDDLVSYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+   L  +++ D   ILT+ +++LI QYK+L   + + L+F ED++ A+A  A
Sbjct: 298 ELVGRLPIIASLNEISEEDMVRILTEPKNSLIKQYKKLFSIDDVELNFEEDALKAIAAKA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E  + DI +   +     V+I  E +
Sbjct: 358 IKRKT-----GARGLRAILEENMIDIMYELPEYAGYEVLITPEVI 397


>gi|284052170|ref|ZP_06382380.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira
           platensis str. Paraca]
 gi|291568934|dbj|BAI91206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira
           platensis NIES-39]
          Length = 456

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 15/117 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELMP 53
           P EI   LD+++IGQ + K+ +++A+ N ++R  + A               D + EL  
Sbjct: 81  PVEIKQYLDQHVIGQNNTKKVLSVAVYNHYKRLSVDAENISNQGFDETQGYSDEQVELQK 140

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT ++  LA+L   PF   + T  TE GYVG +VE I+  L+ VA
Sbjct: 141 SNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 197



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 63/216 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 207 GIVYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQI 266

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                            P D
Sbjct: 267 DTSKILFICGGAFVGLDKVVEQRMGKKSLGFIQPGVKPEEEGVKTSVDSTEVLQNVEPQD 326

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   +  L++     ILT+  + L+ QYK+L+K + + L+F  D+
Sbjct: 327 LVKFGLIPEFIGRVPVLTVISPLDEEALVKILTEPHNALVKQYKQLLKMDNVSLEFEPDA 386

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + A+A  A    +     GAR L+ ++E ++ ++ +
Sbjct: 387 LIAIAKEAYRRKT-----GARALRGILEELMLEVMY 417


>gi|206589404|emb|CAQ36366.1| partial clpx protein [Ralstonia solanacearum MolK2]
          Length = 1531

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGY 94
           T +++ LARL   PF+  + T  TE GY
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGY 156


>gi|142369|gb|AAA64734.1| ORF [Azotobacter vinelandii]
          Length = 324

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 59/214 (27%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVS-TKYGS-------- 290
            +GIV++DE DK+  R SG G  V   S EGVQ+ LL +VEG+ V  +K G         
Sbjct: 61  QWGIVYIDEVDKLAKR-SGGGTAVRDISGEGVQQALLKMVEGTEVRISKSGRRNEHSEEQ 119

Query: 291 -INTDHILFIASGAF--------------------HVSR---------------PADL-- 312
            ++T +ILFIA GAF                    H                  P DL  
Sbjct: 120 VVDTRNILFIAGGAFPGLEALVSSRIQPKNTGIGFHAQPRREAPSINELMASLLPDDLHE 179

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFP+   L+ L+ +    ILT+  + L+ QYK+L   +G+ L  T+ +++ 
Sbjct: 180 FGLIPEFIGRFPIITFLQELDHATLLRILTEPRNALVKQYKQLFAYQGVELVITDAALNY 239

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +AD A+     +   GAR L+ V+E  L+   F+
Sbjct: 240 IADQAL-----IRKTGARGLRAVLEAALQQTMFN 268



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           + GP+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L+D A   V+++
Sbjct: 1   MAGPSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQA 60

Query: 118 R 118
           +
Sbjct: 61  Q 61


>gi|154483382|ref|ZP_02025830.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC
           27560]
 gi|149735892|gb|EDM51778.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC
           27560]
          Length = 519

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 281 GIIFIDEIDKIAKKQNTSSRDVSGESVQQGMLKLLEGSEVEVPVGATSKNAMVPLATVNT 340

Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314
            +ILFI  GAF                                    V+    R   ++P
Sbjct: 341 KNILFICGGAFPDLEDIIKERLNKQAAIGFQSELTDKYDNDPNVMKKVTSEDLRKFGMIP 400

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L  L +     ILTD ++ +I QY++L++ + + L+FTE ++  +A  A
Sbjct: 401 EFLGRLPIVFTLDGLTEDMLVKILTDPKNAIIKQYQKLLELDEVKLEFTEGALRTIAKKA 460

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +   +     GAR L+ ++E+ + DI +    D    TV I  EY+ 
Sbjct: 461 IEKKT-----GARALRAIIEKFMLDIMYEIPKDDNIGTVKITEEYIN 502



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P  I  +LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT
Sbjct: 169 APHVIKGKLDDYVIGQDYAKKVMSVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKT 228

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++      E   
Sbjct: 229 YLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------ETGI 282

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
           I  +E  +D +  K  TS +R+V  + ++ G +      E+++ V  TS +
Sbjct: 283 IFIDE--IDKIAKKQNTS-SRDVSGESVQQGMLKLLEGSEVEVPVGATSKN 330


>gi|313905069|ref|ZP_07838439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
 gi|313470139|gb|EFR65471.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
          Length = 504

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65
           +P  I ++LD Y+IGQ  AK+ +A+ + N ++R    PA   D E+   N+L++GPTG G
Sbjct: 151 APHMIKAKLDEYVIGQDRAKKIMAVGVYNHYKRILSEPAKDDDVEIEKSNMLMIGPTGSG 210

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +  
Sbjct: 211 KTYLVKTLARLLDVPLAMTDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 264



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 55/209 (26%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DKI  + + N   VS E VQ+ +L L+EGS V    G           ++N
Sbjct: 264 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEVEVPVGATNKNAMVPLETVN 323

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T +ILFI  GAF                                     R  DL     +
Sbjct: 324 TKNILFICGGAFPDLENVIKERLTKTSTMGFQSELKDRFDGDKDILQQVRMEDLRQFGMI 383

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L+SL +     IL + ++ ++ QY++LM+ + + L F ++++ A+A  
Sbjct: 384 PEFLGRLPIVFALESLTEDMLVEILREPKNAILKQYRKLMEIDEVKLTFEDEALHAIAAK 443

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L+ ++E  + DI +
Sbjct: 444 ALERET-----GARALRAIIEDFMLDIMY 467


>gi|153855783|ref|ZP_01996784.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814]
 gi|149751910|gb|EDM61841.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814]
          Length = 483

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 71/114 (62%), Gaps = 4/114 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P +I ++LD Y++GQ+ AK+ +++A+ N ++R  +  D  D  E+   N+L++GPTG G
Sbjct: 132 APHKIKAKLDEYVVGQEYAKKVMSVAVYNHYKR--VATDSMDDIEIEKSNMLMIGPTGSG 189

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT + + LA++   P    + T  TE GY+G ++E ++  L+  A N V ++ +
Sbjct: 190 KTYLVKTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 243



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 56/227 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           ++NT
Sbjct: 244 GIIFIDEIDKIAKKKNSSQRDVSGESVQQGMLKLLEGSDVEVPVGATSKNAMVPLTTVNT 303

Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314
            +ILFI  GAF                +   ADL                        +P
Sbjct: 304 RNILFICGGAFPDLNGIIKERLTKQAAIGFGADLRDKYNNDKEILKKVTTEDLRAFGMIP 363

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+   L+ +++     IL + ++ ++ QY++L+  + + L+F +D++ A+A  A
Sbjct: 364 EFLGRLPIVFTLQGMSEEMLVEILKEPKNAILKQYQKLLALDEVKLEFNDDALHAIAKKA 423

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           +       D GAR L+ ++E  + DI +    D     V+I  EY+ 
Sbjct: 424 LK-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVIITKEYIE 465


>gi|168031008|ref|XP_001768014.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680856|gb|EDQ67289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 446

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 24/131 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRA--VAIALRNRWRR--------------------QQLPA 45
           +PREI   LD++++GQ+ AK+A  +++A+ N ++R                     ++  
Sbjct: 12  TPREICQALDKFVVGQEQAKKARILSVAVYNHYKRIYFESMRKGNAKPTNEGFGVSEVEC 71

Query: 46  DLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII- 103
           +  D EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+ 
Sbjct: 72  EENDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILY 131

Query: 104 RDLVDVAINIV 114
           + LV+   N++
Sbjct: 132 KLLVEAEFNVL 142



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 64/221 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+            ++  I
Sbjct: 147 GIIYIDEVDKITKKAESKNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGEHIQI 206

Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311
           +T  ILFI  GAF         R  D                                  
Sbjct: 207 DTKDILFICGGAFVELEKSIAERKQDSSIGFGAPVRANMRGNKLIDAAITSSLLETVESS 266

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +L++     +LT+  + L  QYK++     + L +TE 
Sbjct: 267 DLISYGLIPEFIGRFPVIVSLSALDEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEG 326

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            +  +A  AV     V + GAR L++ +E VL +  +   D
Sbjct: 327 GLRRIAQKAV-----VKNTGARGLRSTLETVLTEAMYQVPD 362


>gi|15806971|ref|NP_295696.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus
           radiodurans R1]
 gi|21263490|sp|Q9RSZ6|CLPX_DEIRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|6459761|gb|AAF11525.1|AE002035_8 ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus
           radiodurans R1]
          Length = 403

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 52/222 (23%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+   V  + G          +
Sbjct: 171 GIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 230

Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317
           +T +ILFI  GAF     ++R                         P DL     +PE  
Sbjct: 231 DTRNILFIVGGAFESMSEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLVKFGLIPEFV 290

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P+ V L+ L++     ILT+ +  +I QY+ L   +G+ L F+E+++  +A  A   
Sbjct: 291 GRLPLVVQLQDLDEDALIRILTEPQGAIIKQYQALFGFQGVDLTFSEEALQEVAHRAKER 350

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +     GAR L+ V+E+ + D+ F       K +  +AEY+
Sbjct: 351 KT-----GARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYI 387



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 3/103 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S +EI + LD ++IGQ +AK+A+A+A+ + + R   P      L   NILL+GPTG GKT
Sbjct: 62  SAKEIKAYLDEFVIGQDEAKKALAVAVVSHYHRLSNP---DAGLQKSNILLIGPTGTGKT 118

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A
Sbjct: 119 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 161


>gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 320

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 65/216 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289
           GIV++DE DKI  +  G+    +R    EGVQ+ LL ++EG+  +            +Y 
Sbjct: 80  GIVYIDEIDKIARK--GDTPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 137

Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313
            ++T +ILFI  GAFH                                  ++ P DL+  
Sbjct: 138 QVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFGARITHREERSVGELLAMAEPEDLMKF 197

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR P+   L  L + D  +ILT  ++ L+ QY++L + E + L F+++S+ A+
Sbjct: 198 GMIPEFIGRLPMVATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAI 257

Query: 371 ADVAVNLNSTVGDIGARRLQTVME----RVLEDISF 402
           A  A+  NS     GAR L+ +ME     V+ D+ F
Sbjct: 258 AREAMRRNS-----GARGLRAIMEDAMLEVMYDVPF 288



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  
Sbjct: 10  ELQKSNILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHN 69

Query: 110 A 110
           A
Sbjct: 70  A 70


>gi|78183645|ref|YP_376079.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CC9902]
 gi|123729976|sp|Q3B0U2|CLPX_SYNS9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78167939|gb|ABB25036.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           sp. CC9902]
          Length = 450

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P EI S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PLEIKSFLDQQVVGQNAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 66/234 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF---------HVSR-------PAD------------------------ 311
           +T  ILFI  GAF          + R       PAD                        
Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRSRANRDLQAAQVLRNLEPDD 321

Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L F +D+
Sbjct: 322 LVKYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQLQFADDA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           I A+A  A    +     GAR L+ ++E ++ D+ +   DL  ++ V D    R
Sbjct: 382 ITAIAQEAHRRKT-----GARALRGIIEEIMLDLMY---DLPSQSSVKDFTVTR 427


>gi|33864599|ref|NP_896158.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           WH 8102]
 gi|46576440|sp|Q7UA37|CLPX_SYNPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33632122|emb|CAE06578.1| Putative ATP-dependent protease ATP-binding subunit ClpX
           [Synechococcus sp. WH 8102]
          Length = 449

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I S LD  ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQQIKSFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGETEQTATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 67/240 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311
           +T  ILFI  GAF          + R      P D                         
Sbjct: 262 DTSQILFICGGAFVGLDEVVQKRMGRNAIGFMPTDGRGRSRANRELQTTQVLRHLEPDDL 321

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++S    ILT+    L+ Q++ L+  + + L F   +I
Sbjct: 322 VKYGLIPEFIGRMPVSAVLEPLDESALESILTEPRDALVKQFRTLLSMDNVQLQFEPAAI 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIG 424
            A+A  A    +     GAR L+ ++E ++ D+ +   S S ++E T  I    V  H G
Sbjct: 382 HAIAQEAHRRKT-----GARALRGIVEELMLDLMYDLPSQSTVKEFT--ITQAMVEQHTG 434


>gi|328953539|ref|YP_004370873.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453863|gb|AEB09692.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 367

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 14/120 (11%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDEL 51
           F  +P E+ ++LDR+I+GQ+  K+ +A A+   +RR             + +   LR   
Sbjct: 35  FAKTPVELKADLDRFIVGQERGKKTMATAIAFHYRRLGHALKTALAENSKDIEQALRQTR 94

Query: 52  MPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PK NI+L+GPTG GKT  +   + L G PF+  ++TKF+E GYVG+N   I+ DL+  A
Sbjct: 95  TPKANIVLIGPTGCGKTYTAEVASGLIGVPFVVEDMTKFSETGYVGQNTGDILIDLLVAA 154



 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 43/233 (18%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLP 277
           ++  D LID+      + Q V   G+V+LDE DKI    +G  I    VS  GVQ+ LL 
Sbjct: 141 QNTGDILIDLLVAAGGNPQ-VAQMGVVYLDEIDKI----AGEAIAYRDVSGRGVQKGLLK 195

Query: 278 LVEGSSVSTKYG----SINTDHILFIASGAFH-----VSRPADLLP-------------- 314
           L+EG   +   G    S++T H+LFIA G F      V +  DL                
Sbjct: 196 LIEGVENTVDLGRERLSLSTRHVLFIAGGVFEKLDAIVQKRMDLHGFSGDWQDYLLTEDL 255

Query: 315 -------EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                  ++ GRFPVRV    L   +   ILT  E + +  Y    KT GI L FT +++
Sbjct: 256 VVFGMERQLMGRFPVRVTYDMLTTQNLMDILTQCEESPLQAYIHDFKTWGIELVFTAEAL 315

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+A     L S     GAR L +++ RVL +  F         + +D  YVR
Sbjct: 316 KAIA-----LRSQQERTGARGLISILHRVLSEDLFRRPGSYTGLLQVDEGYVR 363


>gi|317495277|ref|ZP_07953647.1| ATP-dependent Clp protease [Gemella moribillum M424]
 gi|316914699|gb|EFV36175.1| ATP-dependent Clp protease [Gemella moribillum M424]
          Length = 403

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65
             P+EI+  L+ Y+I Q  AK++VA+A+ N ++R      D   EL   NI L+G TG G
Sbjct: 61  LKPQEIMDYLNEYVISQDKAKKSVAVAVYNHYKRIMAKQNDETIELQKSNIALIGSTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 121 KTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNA 165



 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 175 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPGEEMIKI 234

Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315
           NT  ILFI  GAF                  S+  +L                    +PE
Sbjct: 235 NTKDILFIIGGAFSGIEEIIKRRLGDKIIGFSKSDELNDDSDIISKVKHEDLVKFGIIPE 294

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV  HL+ L++ D   +LT+ +++++ QY+ L K +G+ L F +D+++ +A  ++
Sbjct: 295 FIGRIPVICHLEELDEQDLVRVLTEPKNSVVKQYEYLFKLDGVNLVFEKDALEEVARESI 354

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
              +     GAR L++++E  L D+ F
Sbjct: 355 KRKT-----GARGLRSIIEEALLDVMF 376


>gi|229828301|ref|ZP_04454370.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM
           14600]
 gi|229792895|gb|EEP29009.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM
           14600]
          Length = 590

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 23/182 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQ------LPADLRD-ELMPKNI 56
           +P +I  +LD+Y++GQ  AK+ +++A+ N ++R    Q+       P DL   ++   NI
Sbjct: 225 APHKIKEQLDQYVVGQDKAKKMISVAVYNHYKRIASEQENQRELGTPEDLDGVDIEKSNI 284

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT + R LARL   P    + T  TE GY+G ++E ++  L+  A N V  
Sbjct: 285 LIIGPTGSGKTYMVRTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVDR 344

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTS 173
           +      EQ  I  +E  +D L  K  T ++R+V  + ++ G +      E+++ V  +S
Sbjct: 345 A------EQGIIFVDE--IDKLAKKKNT-HSRDVSGESVQQGMLKLLEGAEVEVPVGASS 395

Query: 174 SD 175
            +
Sbjct: 396 KN 397



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           GI+F+DE DK+  + + +   VS E VQ+ +L L+EG+ V    G           ++NT
Sbjct: 348 GIIFVDEIDKLAKKKNTHSRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTTVNT 407

Query: 294 DHILFIASGAF-------------------------------HV---SRPADL-----LP 314
            +ILFI  GAF                               H+    R  DL     +P
Sbjct: 408 RNILFIVGGAFPGLEDIIKERLSKRSSMGFTSELRGDVGKDIHILEKVRSEDLRNFGMIP 467

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+    + L++  F  ILT+ ++ +I QY++L+  + + L F++ +  A+A  A
Sbjct: 468 EFLGRLPIVTAFEQLDEDMFVRILTEPKNAIIKQYQKLLALDEVRLTFSDGAFRAIARKA 527

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
                   ++GAR L++++E  + DI +
Sbjct: 528 AEE-----ELGARALRSIIEEYMMDIMY 550


>gi|194741360|ref|XP_001953157.1| GF17351 [Drosophila ananassae]
 gi|190626216|gb|EDV41740.1| GF17351 [Drosophila ananassae]
          Length = 675

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 449

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 450 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 509

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 510 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNISMLVRILTEPRNALVPQYKAL 569

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FT+D++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 570 LGLDDVDLTFTDDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 624

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 625 HITADYVK 632



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 326 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 385

Query: 109 VAINIVR 115
              N+ R
Sbjct: 386 ANYNVER 392


>gi|116074349|ref|ZP_01471611.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
 gi|116069654|gb|EAU75406.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
          Length = 451

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P+EI + LD  ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQEIKAFLDHQVVGQDAAKKVLSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 63/216 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF----------------------------HVSR------------PAD 311
           +T  ILFI  GAF                              SR            P D
Sbjct: 262 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPSSDGRGRNKASRDLQAAQVLRHLEPDD 321

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L++   + ILT+    L+ Q++ L+  + + LDF  ++
Sbjct: 322 LVRYGLIPEFIGRMPVSAVLEPLDEEALKSILTEPRDALVKQFRTLLSMDNVQLDFETEA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 VEAIASEAHRRKT-----GARALRGIVEELMLDLMY 412


>gi|115441503|ref|NP_001045031.1| Os01g0886600 [Oryza sativa Japonica Group]
 gi|56784314|dbj|BAD82240.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
           Japonica Group]
 gi|56785236|dbj|BAD82124.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
           Japonica Group]
 gi|113534562|dbj|BAF06945.1| Os01g0886600 [Oryza sativa Japonica Group]
          Length = 496

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------QQLPADLRD---- 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R                L A   D    
Sbjct: 79  TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNNI 138

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE I++ L+  
Sbjct: 139 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLVA 198

Query: 110 A 110
           A
Sbjct: 199 A 199



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + GS          I
Sbjct: 209 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 268

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+ P             
Sbjct: 269 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRINMRSSEVTDPMVTSSLLESVESG 328

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ 
Sbjct: 329 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 388

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418
           ++  +A  A+  N+     GAR L+ ++E +L +  +   D  EKT       VV+D E 
Sbjct: 389 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 441

Query: 419 V 419
           +
Sbjct: 442 I 442


>gi|164686708|ref|ZP_02210736.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
 gi|164604098|gb|EDQ97563.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
          Length = 415

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66
           P+E++  L+ Y+IGQ+ AK+ +++A+ N ++R      + +D ++   NILL+GPTG GK
Sbjct: 63  PKEMMEILNDYVIGQERAKKILSVAVYNHYKRIYSKKGNSKDVDIQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 123 TLLAQTLAKTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 57/205 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKI 235

Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313
           +T ++LFI  GAF      + R                             P DLL    
Sbjct: 236 DTTNVLFILGGAFDGIEKIIQRRGETKTLGFGAKIESKKNVDLGKIYSKVLPEDLLKFGI 295

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L+ L+++    IL + ++ L+ QYK+L++ + + L+F ++++ A+A 
Sbjct: 296 IPEFIGRIPVVATLELLDENALMRILQEPKNALVKQYKKLLELDNVELEFEDEALRAIAK 355

Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397
            A+  N+     GAR L++++E V+
Sbjct: 356 KAIERNT-----GARGLRSIVESVM 375


>gi|224006884|ref|XP_002292402.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972044|gb|EED90377.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 348

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 104/231 (45%), Gaps = 63/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK----------YGS 290
           GIV++DE DKI  R SG  + +SR    EGVQ  LL +VEG+ ++            +  
Sbjct: 125 GIVYIDEMDKI--RKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKPGRKNPRGDFIQ 182

Query: 291 INTDHILFIASGAF-----------------------------HV-------SRPADL-- 312
           I+T +ILFI+ GAF                             HV       ++P DL  
Sbjct: 183 IDTTNILFISGGAFSGLEKIINRRMDAASIGFGAKMKKNVDDFHVQGKYFDNAQPKDLVT 242

Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
              +PE  GRFPV V  K L +     ILT  +++LI QY       GI    TE ++  
Sbjct: 243 FGMIPEFVGRFPVIVSTKGLTEKSLIDILTVPKNSLIKQYTFQFAMNGIRFHATEGALKE 302

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A +A    S     GAR L+++ E +L +  F    ++   TV +DAE V
Sbjct: 303 IAKMAFGRGS-----GARGLRSITENMLMETMFVVPSIKNVHTVYLDAEAV 348



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 10/109 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD----ELMPKNIL 57
           +P+EI   L+ Y+IGQ++ K A+++ + N ++R      QQ           EL   NI+
Sbjct: 3   TPKEIYDGLNEYVIGQRNVKIALSVGVHNHYKRISVVEAQQSALQAMQVEDCELDKSNII 62

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           ++GPTG GKT + + LA+L   P +  + T  T+ GYVG +VE I+  L
Sbjct: 63  IIGPTGSGKTLLVKTLAKLIDVPLVIADATCLTQAGYVGEDVESILFKL 111


>gi|313682964|ref|YP_004060702.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155824|gb|ADR34502.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum
           kujiense DSM 16994]
          Length = 410

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
            +P+E+ + L +YIIGQ  A++ +++A+ N ++R  +    +   E+   N+LL+GPTG 
Sbjct: 59  LTPKELNTFLGQYIIGQDRARKLLSVAVYNHYKRIFKHTVVEDETEIAKSNVLLIGPTGS 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A
Sbjct: 119 GKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAA 164



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 174 GIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQDFIQI 233

Query: 292 NTDHILFIASGAF-------------------HVSR-------------PADL-----LP 314
           +T  ILFI  GAF                   H  R             P DL     +P
Sbjct: 234 DTSGILFICGGAFDGLGQILERKKGSNVMGFGHDKRSSSDIDDSFENVEPDDLVSYGLIP 293

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+   L  +++ +   ILT+ +++L+ QY +L   + + L F +++++A+A  A
Sbjct: 294 ELIGRLPIIASLNKISEEEMVRILTEPKNSLVKQYTKLFAIDDVELTFDKEALNAIAAKA 353

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ +ME  + D  +   +     V+I  E V
Sbjct: 354 LARKT-----GARGLRAIMEETMGDTMYELPEYSGYEVLITKEVV 393


>gi|6273581|emb|CAB60145.1| ClpX protein [Oenococcus oeni]
          Length = 413

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+  +    N  +R  + L      EL   NILL+GPTG G
Sbjct: 58  TPIELVKHLNEYVIGQEEAKKIFSGRCYNHEKRVNESLQHKSDVELQKSNILLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 118 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 171



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 58/200 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  +         Y  +
Sbjct: 172 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 231

Query: 292 NTDHILFIASGAF---------------------------HVSRPAD------------- 311
           +T +ILFI  GAF                           H ++                
Sbjct: 232 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQHFNKKNPLTQLTDQDVIKFG 291

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ L F   ++  +A
Sbjct: 292 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLVFDPKALKEMA 351

Query: 372 DVAVNLNSTVGDIGARRLQT 391
            +A++  S     GAR L++
Sbjct: 352 KIAIDKKS-----GARGLRS 366


>gi|314968427|gb|EFT12525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA1]
          Length = 429

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59
           PRE+   LD ++I Q+ A R +++A+ N ++R Q  A++           EL   NIL++
Sbjct: 65  PRELCEFLDAWVICQKYAMRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELRKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T ++LFI  GAF                                   + RP DL     
Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ L FTE +++A+AD
Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            AV   +     GAR L+ ++E  L D+ F
Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389


>gi|78211619|ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           CC9605]
 gi|123579027|sp|Q3ANI9|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. CC9605]
          Length = 449

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQDIKSFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKAEMDVDQAQR 201



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 65/226 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311
           +T  ILFI  GAF          + R      P+D                         
Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPSDGRGRSRANRDLQAAQVLRHLEPDDL 321

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++S  + ILT+    L+ Q++ L+  + + L F +D+I
Sbjct: 322 VRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMDNVQLQFADDAI 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A+A  A    +     GAR L+ ++E ++ D+ +   DL  +T V
Sbjct: 382 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY---DLPSQTSV 419


>gi|238021855|ref|ZP_04602281.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
 gi|237866469|gb|EEP67511.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
          Length = 426

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD-ELMPKNILLVGPT 62
           +P E+V++L+ ++IGQ  AK+A+A+A+ N ++R + P    A+L + EL   N+LL+GPT
Sbjct: 65  TPAELVAQLNEHVIGQDAAKKALAVAVYNHYKRLRQPENGKAELANVELSKSNVLLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           G GKT +++ LAR    PF   + T  TE GYVG +VEQII  L+
Sbjct: 125 GSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLL 169



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 58/223 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  SV  + G         S+
Sbjct: 182 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRRNPNQQFISV 241

Query: 292 NTDHILFIASGAF-----------------------------HVSR------PADLL--- 313
           +T +ILFI  GAF                             ++S       P DL+   
Sbjct: 242 DTSNILFICGGAFAGLDKVIRQRTEQGGIGFGAQVHSKDDNANISELFAQVEPEDLIKFG 301

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L+++    ILT+ ++ L+ Q++ L   E   L F  D++ A+A
Sbjct: 302 LIPELIGRLPVLASLAELDEAALVRILTEPKNALVKQFQALFAMENADLQFEPDALAAIA 361

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            +A+   +     GAR L++++ERVL +  ++  DL++   V+
Sbjct: 362 ALAMKRKT-----GARGLRSIVERVLLETMYALPDLKDVAKVV 399


>gi|320581114|gb|EFW95336.1| ATP-binding protein [Pichia angusta DL-1]
          Length = 432

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 48/220 (21%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVS-----------------T 286
           GIV LDE DK+       G   +  EGVQ+ LL LVEG+SVS                 T
Sbjct: 173 GIVVLDELDKLAKPQVYAGTKDIGGEGVQQALLKLVEGTSVSVQGKKSNHMENTGLGGGT 232

Query: 287 KYGSINTDHILFIASGAF--------------------HVSRPADL-----LPEIQGRFP 321
              +++T  ILFI  GAF                      ++P+DL     +PE+ GR P
Sbjct: 233 AEYTVDTSTILFIGMGAFTGLDKIIKKRLGRKKQSDVLSKAQPSDLEQYGLIPELVGRMP 292

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           V   LK L   D   IL + +++++ QY+      G+ L FT+ ++  +A+ A+  N T 
Sbjct: 293 VFSSLKQLEVDDLERILVEPQNSIVRQYEYSFAKSGVRLAFTKSAVRKIAETALK-NGT- 350

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
              GAR L+ V+E+VL   ++         V++D E + +
Sbjct: 351 ---GARGLRGVLEKVLLAANYECPGSGISFVLVDEEVMEM 387



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 21/132 (15%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LP-----AD 46
           ++F +PR++ + LD+YIIGQ   K+ +++A+ N + R Q             P     +D
Sbjct: 40  YSFPTPRQMKAHLDKYIIGQDHCKKVLSVAVFNHYIRVQDASNETSSTLLGAPVLHKKSD 99

Query: 47  LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
              EL   NILL GPTG GKT  +  +AR+   P +  + T  T+ GYVG +VE  I  L
Sbjct: 100 TGVELEKSNILLFGPTGSGKTLAATTMARVLQVPIVIQDCTSLTQAGYVGEDVESCILKL 159

Query: 107 V---DVAINIVR 115
           +   D  +N+ +
Sbjct: 160 LAKADYDVNLCQ 171


>gi|58699504|ref|ZP_00374231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533977|gb|EAL58249.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 216

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A  ++V+  R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181


>gi|33241266|ref|NP_876208.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|46576459|sp|Q7V9L5|CLPX_PROMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33238796|gb|AAQ00861.1| ATP-dependent protease Clp ATPase subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 450

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P EI S LD  ++GQ+DAK+ +++A+ N ++R        +E       L   NILL+GP
Sbjct: 82  PIEIKSFLDNQVVGQEDAKKILSVAVYNHYKRLAWQGSETNEIDLHTTKLHKSNILLIGP 141

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+
Sbjct: 142 TGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLL 187



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 62/215 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDSIQI 259

Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312
           +T  ILFI  GAF                                       +   P DL
Sbjct: 260 DTSQILFICGGAFVGLEDIVQKRLGRNSIGFMTNDNRGKSRKSNDLPKNQVLNNLEPDDL 319

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   L+ L+      IL +    +I Q+  LM  + + L F E++I
Sbjct: 320 VRYGLIPEFIGRMPVSAVLEPLDVDALEAILQEPRDAVIKQFITLMSMDNVKLTFEENAI 379

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            ++A  A    +     GAR L+ ++E ++ ++ +
Sbjct: 380 KSIAKEAFRRKT-----GARALRGIVEELMLELMY 409


>gi|27374353|gb|AAO01094.1| CG4538-PA [Drosophila willistoni]
          Length = 675

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 449

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 450 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 509

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L
Sbjct: 510 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNINMLVRILTEPRNALVPQYKAL 569

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 570 LGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRRV 624

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 625 HITADYVK 632



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 326 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 385

Query: 109 VAINIVR 115
              N+ R
Sbjct: 386 ANYNVER 392


>gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
 gi|238689204|sp|B2GGB7|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
          Length = 431

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 13/115 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDE----LMPKN 55
           P+++   L  Y+IGQ+ AKR++A+A+ N ++R           L     DE    +   N
Sbjct: 64  PKQVYDHLQEYVIGQEPAKRSLAVAVYNHYKRIRAGVSGHTLSLAGAEGDEEAIEVAKSN 123

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ILLVGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 124 ILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAGYVGEDVENILLKLIQAA 178



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 54/207 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 188 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFLHI 247

Query: 292 NTDHILFIASGAFH-------------------------------VSRPADLL-----PE 315
           +T ++LFI +GAF                                  +P DLL     PE
Sbjct: 248 DTTNVLFIVAGAFAGLEEIVQQRTGKKGIGFGAPIRDTADVDIAGQVQPEDLLKFGLIPE 307

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   L  L+ +D   ILT+  + L+ QY++L + +G+ L F   +++A+A++A+
Sbjct: 308 FIGRLPVVATLSKLSVADMVRILTEPRNALVKQYRKLFQLDGVELTFDPQALEAIAELAL 367

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402
              +     GAR L+ ++E +L  + F
Sbjct: 368 ERGT-----GARGLRAILEDILMPVMF 389


>gi|195450106|ref|XP_002072367.1| GK22807 [Drosophila willistoni]
 gi|194168452|gb|EDW83353.1| GK22807 [Drosophila willistoni]
          Length = 683

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 404 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 457

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 458 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 517

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L
Sbjct: 518 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNINMLVRILTEPRNALVPQYKAL 577

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  F       + V
Sbjct: 578 LGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRRV 632

Query: 413 VIDAEYVR 420
            I A+YV+
Sbjct: 633 HITADYVK 640



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 334 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 393

Query: 109 VAINIVR 115
              N+ R
Sbjct: 394 ANYNVER 400


>gi|116071741|ref|ZP_01469009.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
 gi|116065364|gb|EAU71122.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
          Length = 450

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P EI S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PLEIKSFLDQQVVGQNAAKKLMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 66/237 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF---------HVSR-------PAD------------------------ 311
           +T  ILFI  GAF          + R       PAD                        
Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRNRTNRDLQAAQVLRNLEPDD 321

Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L+F +D+
Sbjct: 322 LVKYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQLEFADDA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           I A+A  A    +     GAR L+ ++E ++ D+ +   DL  ++ V D    R  +
Sbjct: 382 ITAIAQEAHRRKT-----GARALRGIIEEIMLDLMY---DLPSQSSVKDFTVTRAMV 430


>gi|189182914|ref|YP_001936699.1| ATP-dependent protease ATP-binding subunit ClpX [Orientia
           tsutsugamushi str. Ikeda]
 gi|238692227|sp|B3CQC6|CLPX_ORITI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189179685|dbj|BAG39465.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi str. Ikeda]
          Length = 417

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 6   NFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           N+S   P++I   ++ +++GQQ A + +A+A+  +  R +   +L D +   N+LL+GPT
Sbjct: 57  NYSKLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFE-HRELADLVAKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           G GKT I++ LA++   PF   + T  TE GYVG +VE II  L+  A  N+ R  +
Sbjct: 116 GCGKTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQK 172



 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  I
Sbjct: 173 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQEFIQI 232

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T ++LFI  GAF                     V    D                   L
Sbjct: 233 DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEADDLTKFGL 292

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  LN+     ILT  ++ L+ QY++L + +G  L F E+++ A+A 
Sbjct: 293 IPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALVAIAQ 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+   +     GAR L+ ++E VL D  F  S+L+   V+I A+ V+
Sbjct: 353 KALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVK 395


>gi|148284535|ref|YP_001248625.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|166214796|sp|A5CDP2|CLPX_ORITB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146739974|emb|CAM80014.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi
           str. Boryong]
          Length = 417

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 6   NFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           N+S   P++I   ++ +++GQQ A + +A+A+  +  R +   +L D +   N+LL+GPT
Sbjct: 57  NYSKLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFE-HRELADLVAKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           G GKT I++ LA++   PF   + T  TE GYVG +VE II  L+  A  N+ R  +
Sbjct: 116 GCGKTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQK 172



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 57/228 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+                +  I
Sbjct: 173 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQDFIQI 232

Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312
           +T ++LFI  GAF                     V    D                   L
Sbjct: 233 DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEADDLTKFGL 292

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L  LN+     ILT  ++ L+ QY++L + +G  L F E+++ A+A 
Sbjct: 293 IPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALIAIAQ 352

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            A+   +     GAR L+ ++E VL D  F  S+L+   V+I A+ V+
Sbjct: 353 KALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVK 395


>gi|218659018|ref|ZP_03514948.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
           IE4771]
          Length = 127

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           +Y+IGQ+ AK+ +++A+ N ++R      +   EL   NI+LVGPTG GKT +++ LAR+
Sbjct: 37  KYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARI 96

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              PF   + T  TE GYVG +VE II  L+
Sbjct: 97  IDVPFTMADATTLTEAGYVGEDVENIILKLL 127


>gi|326489807|dbj|BAJ93977.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 619

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R      Q+  AD               
Sbjct: 202 TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRVYNATVQKGSADNSGCPDAANDDHDNV 261

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           E+   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I++ L+
Sbjct: 262 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLL 319



 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ V+  + GS          I
Sbjct: 332 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVTIPEKGSRKNSRNDSIQI 391

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+ P             
Sbjct: 392 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRTNIRSSGVTSPTVTSSLLESVESG 451

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ 
Sbjct: 452 DLAKFGLIPEFIGRLPILVSLAALNEDQLVQVLTEPKNSLSRQYRKMFSLNNVKLHFTDG 511

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A+     V + GAR L+ ++E +L +  +   D +     +DA
Sbjct: 512 ALRIVAKKAI-----VKNTGARGLRVILETILLEAMYEIPDEKAGNERVDA 557


>gi|257459195|ref|ZP_05624314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           gracilis RM3268]
 gi|257443580|gb|EEV18704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           gracilis RM3268]
          Length = 412

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65
           P+ ++  L+RY+IGQ+ AK+  ++ + N ++R  +Q  A   D E+   NILL+GPTG G
Sbjct: 64  PKALMEVLNRYVIGQERAKKIFSVGVYNHYKRIFRQTDAKGDDTEISKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 124 KTLMAQTLAKFLDVPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVEKAQR 177



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+             +  I
Sbjct: 178 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 237

Query: 292 NTDHILFIASGAFH-----VSR--------------------------PAD------LLP 314
           +T +ILF+  GAF      ++R                           AD      ++P
Sbjct: 238 DTTNILFVCGGAFDGLNEIINRRIGQNVLGFNQTKRSKKESLNLLNMVEADDLVHYGIIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  +++     ILT+ ++ ++ QY++L   +G  L F +D++  +A +A
Sbjct: 298 ELIGRLHIVATLNEIDEKAMVRILTEPKNAILKQYQKLFAIDGANLKFDDDALREVASLA 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E ++ DI F   +L+   V+I  E V
Sbjct: 358 IKRKT-----GARGLRSIIEEIMIDIMFDLPELKGYDVIISKEVV 397


>gi|196019813|ref|XP_002119046.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens]
 gi|190577177|gb|EDV18468.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens]
          Length = 246

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 59/232 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  I
Sbjct: 1   GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLKLMEGTVASIPPQGGRKHPQQEFLQI 60

Query: 292 NTDHILFIASGAFH-----------------------------VSR------PADL---- 312
           NT +ILF+ SGAF                              VS       P DL    
Sbjct: 61  NTKNILFVCSGAFSGLDKIINQRKKDSSIGFEAIVKNKDEDSSVSNVINGVEPEDLVKYG 120

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+ V +  L++S    IL + +++LI QY++L     I L+F E++   +A
Sbjct: 121 LIPEFIGRLPLIVTINDLDESMLIRILKEPKNSLIQQYQKLFDLNDIKLNFEENAFKEIA 180

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            +A    +     GAR L+ ++E +L D+ F  S+ +  K + I ++ ++L+
Sbjct: 181 KIAFKRKT-----GARGLRAILENILLDLMFDFSNKKNIKEITITSDVIKLN 227


>gi|195327500|ref|XP_002030456.1| GM24560 [Drosophila sechellia]
 gi|194119399|gb|EDW41442.1| GM24560 [Drosophila sechellia]
          Length = 667

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 62/208 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS-TKYGSI-------NTDHI 296
           GIV+LDE D+I A  SG+      +G+Q+ +L ++EGS VS T  G +       +T +I
Sbjct: 418 GIVYLDEVDQICAL-SGS------KGIQQGMLKMLEGSVVSLTNRGQLFGKAVQLDTTNI 470

Query: 297 LFIASGAF-----------------------------HVSR--------PADL-----LP 314
           LF+ASGAF                             H  R          DL     +P
Sbjct: 471 LFVASGAFTGLDKIIERRINEKNSDVTSTGEAGPPNAHQERDKCLIKVQACDLAKFGMIP 530

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ G FP+ V   SL+      ILT+  + L+ QYK +++ +G+ L F+ D++ ++A +A
Sbjct: 531 ELVGHFPIIVPFHSLDAYMLFRILTEPPNALVSQYKAMLRLDGVELTFSHDALISVAQLA 590

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +      G++GAR L+ +ME++L D  F
Sbjct: 591 MK-----GNMGARGLRPIMEQLLLDPMF 613



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NI+++ PTG GKT I++ +A+    PF   + T   +  YVG ++E ++  L+  
Sbjct: 348 ELEKSNIMMLAPTGSGKTLIAKSIAKCLDVPFAICDCTTLMQADYVGGDIESVLLKLLQD 407

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALV 139
           A N V  ++      DEV +  +++  + I   ++
Sbjct: 408 ANNDVERAQTGIVYLDEVDQICALSGSKGIQQGML 442


>gi|153871108|ref|ZP_02000361.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
 gi|152072424|gb|EDN69637.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
          Length = 429

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 8/111 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPAD-----LRDELMPKNILLV 59
           +P  + ++LD Y+IGQ+ AK  + +A+ N ++R   +  P       L  E+   N+L++
Sbjct: 64  TPAAMKAQLDDYVIGQELAKEILTVAVYNHYKRLYHKTTPNHFDKLYLDVEIGKSNVLML 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GP+G GKT ++  LA++ G PF+  + T  T+ GYVG +VE I+  L+DVA
Sbjct: 124 GPSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVESILLRLLDVA 174



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 65/249 (26%)

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS 282
           RL+D   V +  I+  E +GI+++DE DKI AR S + +    VS EGVQ+ LL LVEG+
Sbjct: 169 RLLD---VAKGKIKRAE-WGIIYIDEIDKI-ARASKSAMVERDVSGEGVQQALLKLVEGT 223

Query: 283 SVSTKYGS----------INTDHILFIASGAF--------------------HV------ 306
           +V                ++T  ILFIA GAF                    H       
Sbjct: 224 TVKIPQSKERMRDNGTSIMDTSQILFIAGGAFVGLEEQVAKRISAKQTQIGFHAQVEKTD 283

Query: 307 ----------SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                     ++P DL     +PE  GRFP+   L+ L+++    ILT+  + L+ QY++
Sbjct: 284 KITAERLLQETQPEDLRRFGLIPEFIGRFPILAILEDLDETALVRILTEPRNALVRQYQK 343

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L   E + L+FT  ++ A+A  A+   +     GAR L+ + E++L    F     Q+  
Sbjct: 344 LFAYENVELEFTAKALAAIAKKALAQGT-----GARGLRNIQEQLLRRCMFELPSRQDIV 398

Query: 412 -VVIDAEYV 419
             ++D E V
Sbjct: 399 RCIVDEEAV 407


>gi|50292183|ref|XP_448524.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527836|emb|CAG61485.1| unnamed protein product [Candida glabrata]
          Length = 549

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 166/384 (43%), Gaps = 86/384 (22%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+L++GP+G GKT +++ LAR+   P    + T+ T+ GY+G +VE  I  L+  
Sbjct: 166 ELSKSNVLVIGPSGSGKTLLAQTLARVLDVPIAISDCTQLTQAGYIGEDVEVCIERLL-- 223

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
                             +NA   +                   K   G I   EID ++
Sbjct: 224 ------------------VNANYDV------------------AKAEKGIIVLDEID-KL 246

Query: 170 ADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           A +SS     D+ G G    +L + E             + ++V+K  P  ++  +D+  
Sbjct: 247 AKSSSSFGTKDVSGEGVQQSLLKIIE----------GHNVEITVKK--P--VKVGTDKNN 292

Query: 229 DMDTVHRDSIQMVENYGIVFL-----DEFDKIVA---RDSGNGIGVSREGVQRDLLPLVE 280
           +  T  +D   ++    I+F+        DKIVA   R   N      E        + +
Sbjct: 293 NQTTAKKDETFVINTSNILFMIMGAFVNLDKIVAKRIRKLQNKEEKDGEEED-----MSK 347

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
            S+ S    +IN ++     + A +++ P DL     +PE+ GR P+   L+ L  +D  
Sbjct: 348 SSAYSNSIETINLEN--GKQTSALNLATPTDLVSYGMIPELVGRVPIITALEPLQSNDLF 405

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY  + K  G+ L  T+ ++  +AD A+   +     GAR L+ +MER
Sbjct: 406 HILKEPKNALFDQYTYIFKQFGVRLCMTDKALKKVADFALKERT-----GARGLRGIMER 460

Query: 396 VLEDISFSASD-------LQEKTV 412
           +L ++++   D       + EKTV
Sbjct: 461 LLLNVNYECPDSGISYVLVNEKTV 484


>gi|71066497|ref|YP_265224.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
 gi|123647822|sp|Q4FQB8|CLPX_PSYA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71039482|gb|AAZ19790.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
          Length = 424

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 14/117 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRDELMP 53
           +P+E+ ++LD Y+IGQ  AK+A+A+A+ N ++R ++               AD   EL  
Sbjct: 66  TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQTLANDSKKAKIGAADAMVELAK 125

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  +
Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 182



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   +G           +
Sbjct: 192 GIIYIDEIDKISKKGDNPSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPQQELIQV 251

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +IL I  GAF                                       P DL+   
Sbjct: 252 DTSNILIIVGGAFAGLDKVIQQRTEKTGIGFNADVSSKDDSRRSSELLQQVEPEDLIKFG 311

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QYK L   EG  + FT++++DA+A
Sbjct: 312 LIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E  L +  +    ++  KTV++D + +
Sbjct: 372 KKAMARKT-----GARGLRSIVENALLETMYELPSMKNAKTVLVDEQVI 415


>gi|148238400|ref|YP_001223787.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7803]
 gi|166215216|sp|A5GHS5|CLPX_SYNPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147846939|emb|CAK22490.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus
           sp. WH 7803]
          Length = 451

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I + LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 85  PQDIKAFLDQQVVGQEAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 144

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 145 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 193



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 64/216 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262

Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311
           +T  ILFI  GAF                                        H+  P D
Sbjct: 263 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFMPTEGRGRGKATRDLQAAQVLRHLE-PDD 321

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L+F   +
Sbjct: 322 LVRYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLEFEPSA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           I+A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 382 IEAIAQEAHRRKT-----GARALRGIVEELMLDLMY 412


>gi|268562864|ref|XP_002638688.1| Hypothetical protein CBG11883 [Caenorhabditis briggsae]
          Length = 572

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A + G+      VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 309 GIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 368

Query: 291 INTDHILFIASGAFH-----VSRPAD---------------------------------- 311
           I+T  ILFIASGAF      V R  D                                  
Sbjct: 369 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELLGK 428

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + L 
Sbjct: 429 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 488

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           F+ ++++ +A +A+   +     GAR L++++E  L +  F+
Sbjct: 489 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 525



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           QQ + R      R+   ++Q    +R  L   NILLVGP+GVGKT +++ LAR+   P  
Sbjct: 217 QQQSSRNAPPTFRSLPEKEQA---VR--LEKSNILLVGPSGVGKTFLTQTLARVLDVPIA 271

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASIN 129
             + T  T+ GYVG +VE +I+ LV  A   V ++++     DEV + A+ N
Sbjct: 272 LCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKAQQGIVFLDEVDKIAAAN 323


>gi|309360632|emb|CAP30954.2| hypothetical protein CBG_11883 [Caenorhabditis briggsae AF16]
          Length = 607

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A + G+      VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 344 GIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 403

Query: 291 INTDHILFIASGAFH-----VSRPAD---------------------------------- 311
           I+T  ILFIASGAF      V R  D                                  
Sbjct: 404 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELLGK 463

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + L 
Sbjct: 464 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 523

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           F+ ++++ +A +A+   +     GAR L++++E  L +  F+
Sbjct: 524 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 560



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILLVGP+GVGKT +++ LAR+   P    + T  T+ GYVG +VE +I+ LV  A   V
Sbjct: 279 NILLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 338

Query: 115 RESRR-----DEVREQASIN 129
            ++++     DEV + A+ N
Sbjct: 339 EKAQQGIVFLDEVDKIAAAN 358


>gi|6319704|ref|NP_009786.1| Mcx1p [Saccharomyces cerevisiae S288c]
 gi|586344|sp|P38323|MCX1_YEAST RecName: Full=Mitochondrial clpX-like chaperone MCX1
 gi|536622|emb|CAA85190.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810557|tpg|DAA07342.1| TPA: Mcx1p [Saccharomyces cerevisiae S288c]
          Length = 520

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 201/487 (41%), Gaps = 142/487 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLP-----ADLRD 49
           +P+ +   LD YI+GQ+  K+ +++A+ N +             R+++L      AD RD
Sbjct: 38  TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDRD 97

Query: 50  E--------------------------------LMPKNILLVGPTGVGKTAISRRLARLA 77
           E                                L   N+L+VGP+G GKT ++  LA++ 
Sbjct: 98  EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I  L+                    +NAE  +  A
Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCIERLL--------------------VNAEFDVARA 197

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196
                               G I   EID ++A  ++ I   D+ G G    +L + E  
Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                     K+ ++V++     ++ + D   +  T  +D + +V+   I+F+       
Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278

Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301
               G  +G+ +  V+R  D+  + + G SV +            K+   NT   + + +
Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335

Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           G    A  ++ P DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ +
Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K  G+ L  T+ ++  +A  A+   +     GAR L+ +MER+L ++++         V
Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450

Query: 413 VIDAEYV 419
           +ID   V
Sbjct: 451 LIDEATV 457


>gi|260435985|ref|ZP_05789955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. WH 8109]
 gi|260413859|gb|EEX07155.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. WH 8109]
          Length = 449

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I + LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQDIKNFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQR 201



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 65/226 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261

Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311
           +T  ILFI  GAF          + R      P D                         
Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPGDGRGRSRANRDLQAAQVLRHLEPDDL 321

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++S  + ILT+    L+ Q++ L+  + + L F +D+I
Sbjct: 322 VRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMDNVQLQFADDAI 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +A+A  A    +     GAR L+ ++E ++ D+ +   DL  +T V
Sbjct: 382 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY---DLPSQTSV 419


>gi|309364622|emb|CAP24925.2| hypothetical protein CBG_04167 [Caenorhabditis briggsae AF16]
          Length = 489

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 75/231 (32%)

Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292
           GIVFLDEFDKI         SGN   VS +GVQ+ LL LVEGS V  +         +I+
Sbjct: 263 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 321

Query: 293 TDHILFI------------------------ASGAFH------------------VSRPA 310
           T +ILFI                        +S + H                  VS+  
Sbjct: 322 TTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTEKLMDSDEENVSKAR 381

Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           D               ++PE+ GRFPV V    L+KS  + +LT+ + +L+ Q K+  + 
Sbjct: 382 DEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEPKGSLVAQTKKFFEN 441

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           E + L F+  +ID +AD+AV   +     GAR L++++E+ + +  +   D
Sbjct: 442 ENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAKYEYQD 487



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 52/162 (32%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P+EIV  L++Y++GQ+ AK+ +A+A+   +RR                           +
Sbjct: 102 PKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKLRK 161

Query: 42  QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARLA 77
           Q P ++ +E +P+                        N++L+G +G GKT ++++LA + 
Sbjct: 162 QNP-EIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVL 220

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
             P +  + T  T+ GYVG +V+ +++ L+  A   +   +R
Sbjct: 221 DVPIVICDCTTLTQAGYVGDDVDTVVQKLLAEARGDIERCQR 262


>gi|125777787|ref|XP_001359727.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
 gi|54639477|gb|EAL28879.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435

Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311
           +   ++T +ILF+ASGA+                                   V+ P D 
Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495

Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                                ++PE  GRFPV V   SLN S    ILT+  + L+ QYK
Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F ED+++++A +A+  ++     GAR L+++ME++L D  F       +
Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610

Query: 411 TVVIDAEYVR 420
            V I  E VR
Sbjct: 611 GVHITGECVR 620



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371

Query: 109 VAINIVR 115
              N+ R
Sbjct: 372 ANYNVDR 378


>gi|195157162|ref|XP_002019465.1| GL12413 [Drosophila persimilis]
 gi|194116056|gb|EDW38099.1| GL12413 [Drosophila persimilis]
          Length = 666

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435

Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311
           +   ++T +ILF+ASGA+                                   V+ P D 
Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495

Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                                ++PE  GRFPV V   SLN S    ILT+  + L+ QYK
Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F ED+++++A +A+  ++     GAR L+++ME++L D  F       +
Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610

Query: 411 TVVIDAEYVR 420
            V I  E VR
Sbjct: 611 GVHITGECVR 620



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371

Query: 109 VAINIVR 115
              N+ R
Sbjct: 372 ANYNVDR 378


>gi|198477567|ref|XP_002136555.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
 gi|198142843|gb|EDY71556.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435

Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311
           +   ++T +ILF+ASGA+                                   V+ P D 
Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495

Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                                ++PE  GRFPV V   SLN S    ILT+  + L+ QYK
Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F ED+++++A +A+  ++     GAR L+++ME++L D  F       +
Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610

Query: 411 TVVIDAEYVR 420
            V I  E VR
Sbjct: 611 GVHITGECVR 620



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371

Query: 109 VAINIVR 115
              N+ R
Sbjct: 372 ANYNVDR 378


>gi|190570983|ref|YP_001975341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019500|ref|ZP_03335306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357255|emb|CAQ54679.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994922|gb|EEB55564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 425

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 59/232 (25%)

Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGS 290
           +GIVF+DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  
Sbjct: 181 HGIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQ 240

Query: 291 INTDHILFIASGAFHV----------------------------------SRPADLL--- 313
           ++T +ILFI  GAF                                    ++P DL+   
Sbjct: 241 VDTSNILFICGGAFEGLNKIIEARKKGTSVGFGADISQSKAQKKKNALRDAQPEDLIKFG 300

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR P+   L  L+  D   +LT+  + L+ QYK L+    + L+F++++I A+A
Sbjct: 301 LIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALVKQYKALLAFSKVNLEFSDEAISAIA 360

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
             A++  +     GAR L+ ++E +L D+ + + +   +  T+ +  + V L
Sbjct: 361 KKAISYKT-----GARMLRAILESLLLDVMYISGNGGFEGSTITVTKKMVEL 407



 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I   L ++++GQ+ A+  +++A+ N  +   QL +    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMVQLHSISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAA 172


>gi|116750477|ref|YP_847164.1| ATPase [Syntrophobacter fumaroxidans MPOB]
 gi|116699541|gb|ABK18729.1| ATPase AAA-2 domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 594

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 7/113 (6%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPK 54
           K+ F+  P E+ + LD+++I Q +AK  +A  +   + R +                +  
Sbjct: 56  KIRFDMKPEELEAYLDQFVIRQDEAKAVLATKISTHYNRIRFQRRRSRYGVENPVGRIKN 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           NILL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++R+LV
Sbjct: 116 NILLIGPTGVGKTYLVKLIAQKIGVPFVKGDATKFSETGYVGGDVEDLVRELV 168



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 95/221 (42%), Gaps = 65/221 (29%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------ 289
           D I++ E YGI+++DE DKI + +   G  VSR GVQR LL  +E + V  K        
Sbjct: 173 DDIELAE-YGIIYVDEVDKIASSNHYIGPDVSRTGVQRALLKPMEETDVDLKVPHDPVSQ 231

Query: 290 ----------------SINTDHILFIASGAFH---------------------------- 305
                           ++NT +ILFI SGAF+                            
Sbjct: 232 IQAIEQYRKTGKREKRTVNTRNILFIMSGAFNGLAAIAKKRMQKQGIGFGAQIQSREDDT 291

Query: 306 ----VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                ++  DL+      E  GR PV   L+ L   D   IL +  + +I   KE  ++ 
Sbjct: 292 KYLRHAKAEDLIEYGFESEFVGRLPVVAVLEPLEVEDLYQILKNVRNPIIQGKKEDFRSY 351

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           GI + F +D++  LA+ A    +     GAR L +V+E+VL
Sbjct: 352 GIDIKFEDDALRLLAEKAFEEKT-----GARGLVSVIEKVL 387


>gi|291517939|emb|CBK73160.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 275

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 64/111 (57%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 144 PHKIKAMLDDYVVGQDYAKKVMSVAVYNHYKRVATGTMDDIEIEKSNMLMLGPTGSGKTY 203

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + R LA+L   P    + T  TE GY+G ++E ++  L+  A N V   ++
Sbjct: 204 LVRTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAGNDVERCQQ 254


>gi|170597016|ref|XP_001902980.1| ATP-dependent Clp protease, ATP-binding subunit [Brugia malayi]
 gi|158588999|gb|EDP28174.1| ATP-dependent Clp protease, ATP-binding subunit, putative [Brugia
           malayi]
          Length = 571

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 69/240 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           GIVFLDE DKI A  +        VS EGVQ  LL LVEG+ V+ K           +  
Sbjct: 322 GIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQ 381

Query: 291 INTDHILFIASGAFH------------------------------------------VSR 308
           ++T  ILF+ASGAF                                           + R
Sbjct: 382 VDTTDILFVASGAFTALDRIVGKRLDKKTLGLGAKSGMQRITDDDKLEAAISKKRDDLLR 441

Query: 309 PAD--------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
            AD        ++PE+ GRFPV V   SL+K     +LT+  ++L+ Q K     +G  L
Sbjct: 442 QADQGDLISFGIVPELVGRFPVIVPFHSLDKGMLVRVLTEPTNSLLAQKKLEFAMDGADL 501

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F+ D++D +A +A+   +     GAR L++++E+VL +  F+      ++V I+ E V+
Sbjct: 502 SFSSDALDEIAALALERKT-----GARALRSIVEKVLLEAKFTVPGSDIESVHINRECVQ 556



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           D+   L   NILL+GP+GVGKT I++ LAR+   P    + T  T+ GYVG +VE +++ 
Sbjct: 248 DVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDVESVVQK 307

Query: 106 LVDVA 110
           LV  A
Sbjct: 308 LVQNA 312


>gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           denitrificans DSM 1251]
          Length = 414

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63
            +P+E+   L  YIIGQ+ A++ +++A+ N ++R        D   E+   N+LL+GPTG
Sbjct: 62  MTPKELNLFLADYIIGQERARKLLSVAVYNHYKRIFKTHTTKDDDTEIAKSNVLLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAADGDVERAQR 177



 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL ++EG+ V+            ++ +I
Sbjct: 178 GIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQEFIAI 237

Query: 292 NTDHILFIASGAF-------------------HVSR-------------PADL-----LP 314
           +T  ILFI  GAF                   H  +             P DL     +P
Sbjct: 238 DTTGILFICGGAFDGLDEILKKKQGENVLGFGHEKKSKKEQKMSYDAVEPDDLVNYGLIP 297

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+   L  + + D   ILT+ ++++I QYK+L   + + L+F ED++ A+A  +
Sbjct: 298 ELVGRLPIIASLNEITEDDMVRILTEPKNSIIKQYKKLFSIDNVELNFEEDALRAIATKS 357

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L+ ++E  + DI +
Sbjct: 358 IKRKT-----GARGLRAILEENMIDIMY 380


>gi|296274531|ref|YP_003657162.1| sigma 54 interacting domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098705|gb|ADG94655.1| Sigma 54 interacting domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 407

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 6/107 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVGPTG 63
           +P E+ + LD Y++GQ  AK+ +++A+ N +    RR ++  D   E+   N+LL+GPTG
Sbjct: 65  TPSELKALLDDYVVGQHRAKKVLSVAVYNHYKRIFRRDEIGEDT--EINKSNVLLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +AR    P    + T  TE GYVG +VE +I  L+  A
Sbjct: 123 SGKTLLAQTIARYLDVPLAIADATSLTEAGYVGDDVENVITRLLQAA 169



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+F+DE DKI        I   VS EGVQ+ +L ++EGS  +V  K G          +
Sbjct: 179 GIIFIDEIDKIARMSENRSITRDVSGEGVQQAMLKIIEGSVVNVPPKGGRKHPGQDMTQV 238

Query: 292 NTDHILFIASGAFH-----VSRP--------------------------AD------LLP 314
           +T +ILFI  GAF      + R                           AD      L+P
Sbjct: 239 DTTNILFICGGAFDGLEEIIKRKKGNNILGFNQVKNSKKDEAGLISFVEADDLVKYGLIP 298

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR  +   L  + + D   ILT+ ++ LI QY +L + + + L+F +D++ A+A  A
Sbjct: 299 ELIGRLHMIATLNEITEDDMVHILTEPKNALIKQYIKLFEMDKVNLEFDKDALLAIAKKA 358

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L++++E ++ DI F   + +EKT+ I  + V
Sbjct: 359 IERKT-----GARGLRSILEDIMLDIMFDLPNYKEKTITITKDVV 398


>gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim
           5]
          Length = 333

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 89  GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKVMEGTVASVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 149 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 208

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A 
Sbjct: 209 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 268

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+     V   GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 269 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 312



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NI+LVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  
Sbjct: 19  ELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQA 78

Query: 110 A-INIVRESR 118
           A  N+ R  R
Sbjct: 79  ADYNVERAQR 88


>gi|312072918|ref|XP_003139285.1| ATP-dependent Clp protease [Loa loa]
 gi|307765553|gb|EFO24787.1| ATP-dependent Clp protease [Loa loa]
          Length = 570

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 69/240 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           GIVFLDE DKI A  +        VS EGVQ  LL LVEG+ V+ K           +  
Sbjct: 320 GIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQ 379

Query: 291 INTDHILFIASGAF------------------------------------------HVSR 308
           ++T  ILF+ASGAF                                           + R
Sbjct: 380 VDTTDILFVASGAFTALDRIVGKRLDKKTLGLGARSGVQRITDDDKLEAAISKKRDDLLR 439

Query: 309 PAD--------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
            AD        ++PE+ GRFPV V   SL+K     +LT+  ++L+ Q K     +G  L
Sbjct: 440 QADQGDLISFGIVPELVGRFPVIVPFHSLDKGMLIRVLTEPRNSLLAQKKLEFAMDGADL 499

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F+ D++D +A +A+   +     GAR L++++E+VL +  F+      ++V I+ E V+
Sbjct: 500 SFSSDALDEIAALALERKT-----GARALRSIVEKVLLEAKFTVPGSDIESVHINRECVK 554



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           D+   L   NILL+GP+GVGKT I++ LAR+   P    + T  T+ GYVG +VE +++ 
Sbjct: 246 DVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDVESVVQK 305

Query: 106 LVDVA 110
           LV  A
Sbjct: 306 LVQNA 310


>gi|151946612|gb|EDN64834.1| ATP-binding protein [Saccharomyces cerevisiae YJM789]
          Length = 520

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 201/487 (41%), Gaps = 142/487 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLP-----ADLRD 49
           +P+ +   LD YI+GQ+  K+ +++A+ N +             R+++L      AD RD
Sbjct: 38  TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDRD 97

Query: 50  E--------------------------------LMPKNILLVGPTGVGKTAISRRLARLA 77
           E                                L   N+L+VGP+G GKT ++  LA++ 
Sbjct: 98  EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I  L+                    +NAE  +  A
Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCIERLL--------------------VNAEFDVARA 197

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196
                               G I   EID ++A  ++ I   D+ G G    +L + E  
Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                     K+ ++V++     ++ + D   +  T  +D + +V+   I+F+       
Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278

Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301
               G  +G+ +  V+R  D+  + + G SV +            K+   NT   + + +
Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335

Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           G    A  ++ P DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ +
Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K  G+ L  T+ ++  +A  A+   +     GAR L+ +MER+L ++++         V
Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450

Query: 413 VIDAEYV 419
           +ID   V
Sbjct: 451 LIDEATV 457


>gi|27374380|gb|AAO01118.1| CG4538-PA [Drosophila pseudoobscura]
          Length = 666

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435

Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311
           +   ++T +ILF+ASGA+                                   V+ P D 
Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495

Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                                ++PE  GRFPV V   SLN S    ILT+  + L+ QYK
Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F ED+++++A +A+  ++     GAR L+++ME++L D  F       +
Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610

Query: 411 TVVIDAEYVR 420
            V I  E VR
Sbjct: 611 GVHITGECVR 620



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371

Query: 109 VAINIVR 115
              N+ R
Sbjct: 372 ANYNVDR 378


>gi|47847699|dbj|BAD21479.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           (CLPX) [Oryza sativa Japonica Group]
          Length = 554

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD----------- 49
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R            D  +           
Sbjct: 149 TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 208

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 209 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 266



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + G+          I
Sbjct: 279 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 338

Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308
           +T +ILFI  GAF           H S                                 
Sbjct: 339 DTKNILFICGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLLESVESG 398

Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L SL++     +LT  ++ L  QY +L +   + L FTE 
Sbjct: 399 DLIAYGLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEK 458

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  ++  A+  N+     GAR L++++E +L +  +   +++     IDA
Sbjct: 459 ALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 504


>gi|71982908|ref|NP_001021077.1| hypothetical protein D2030.2 [Caenorhabditis elegans]
 gi|33589133|emb|CAE45047.1| C. elegans protein D2030.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 470

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 208 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 267

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T  ILFIASGAF                                   V R  D     
Sbjct: 268 IDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLSK 327

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + L 
Sbjct: 328 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 387

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           F+ ++++ +A +A++  +     GAR L++++E  L +  F+
Sbjct: 388 FSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFT 424



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LLVGP+GVGKT +++ LAR+   P    + T  T+ GYVG +VE +I+ LV  A   V
Sbjct: 143 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 202

Query: 115 RESRR 119
            ++++
Sbjct: 203 EKAQQ 207


>gi|71982905|ref|NP_001021076.1| hypothetical protein D2030.2 [Caenorhabditis elegans]
 gi|3875395|emb|CAA98115.1| C. elegans protein D2030.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 586

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 324 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 383

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T  ILFIASGAF                                   V R  D     
Sbjct: 384 IDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLSK 443

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + L 
Sbjct: 444 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 503

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           F+ ++++ +A +A++  +     GAR L++++E  L +  F+
Sbjct: 504 FSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFT 540



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LLVGP+GVGKT +++ LAR+   P    + T  T+ GYVG +VE +I+ LV  A   V
Sbjct: 259 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 318

Query: 115 RESRR 119
            ++++
Sbjct: 319 EKAQQ 323


>gi|27374282|gb|AAO01037.1| CG4538-PA [Drosophila virilis]
          Length = 689

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 85/250 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 403 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 456

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P D   
Sbjct: 457 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 516

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L
Sbjct: 517 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 576

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM--ERVLEDISFSASDLQEK 410
           +  + + L FTED+++++A +A+  ++     GAR L+++M  E +L D  F       +
Sbjct: 577 LGLDEVDLSFTEDAVESIATLAMERHT-----GARGLRSIMLQETLLLDPMFIVPGSDIR 631

Query: 411 TVVIDAEYVR 420
            V I AEYVR
Sbjct: 632 GVHITAEYVR 641



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 338 NIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 393


>gi|182414556|ref|YP_001819622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus
           terrae PB90-1]
 gi|177841770|gb|ACB76022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus
           terrae PB90-1]
          Length = 431

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 13/115 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD-ELMPKN 55
           P EI   LD ++IGQ  AK+ +++A+ N ++R              L  +  D E+   N
Sbjct: 63  PSEIKKTLDDFVIGQDHAKKVLSVAVYNHYKRLMFDSGQPGKDSMALSPEFNDVEVEKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ILLVGPTG GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A
Sbjct: 123 ILLVGPTGSGKTLLARTLARILDVPFAISDATTLTEAGYVGEDVENVVLRLLQNA 177



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 65/232 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ +            +Y  I
Sbjct: 187 GIIYIDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPNQEYVQI 246

Query: 292 NTDHILFIASGAF------------HVS-----------------------RPADLL--- 313
           NT +ILF+  GAF            H S                        P DL+   
Sbjct: 247 NTSNILFVCGGAFVGLDGIVQRRLGHRSLGFSSIQAQQDAAMKPEQMMKSIAPEDLIRFG 306

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L+  D   +L  T++ ++ QY +L   +G+ L  T D+I A+A
Sbjct: 307 MIPEFIGRLPVVSVLDELSVEDLEKVLLRTKNAMVKQYSKLFAMDGVRLRLTTDAIHAIA 366

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419
             A+ L +     GAR L++++E ++ ++ +   DL ++     V IDA  V
Sbjct: 367 RKALELKT-----GARALRSILENLMLEVMY---DLPQRDDVAEVTIDAGVV 410


>gi|85859381|ref|YP_461583.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophus
           aciditrophicus SB]
 gi|85722472|gb|ABC77415.1| ATP-dependent clp protease ATP-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 420

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
           GIV++DE DKI A+ SGN      VS EGVQ+ LL ++EG+  ++  K G          
Sbjct: 181 GIVYIDEIDKI-AKKSGNPSITRDVSGEGVQQALLKIIEGTLANIPPKGGRKHPQQEFIQ 239

Query: 291 INTDHILFIASGAFH----------------------------------VSRPADLL--- 313
           ++T  ILFI  GAF+                                    +P DLL   
Sbjct: 240 VDTTGILFICGGAFNDLPDIIMKRTGVNAMGFGADIKGKQDRKIGELLSEVQPEDLLKCG 299

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV   L  L++ D   IL D + +++ QY +  + E + L FT+ ++ A+A
Sbjct: 300 LIPEFVGRLPVIAPLSELDEDDLVKILVDPKDSIVKQYTKAFELENVKLRFTDSALRAVA 359

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +AV+  S     GAR L+ ++E  + DI +     Q+ +  VI+ + V
Sbjct: 360 KLAVDRKS-----GARGLRAILENAMLDIMYDIPSRQDVRECVINEDVV 403



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PR I   LD+Y++GQ+  K+ +++A+ N ++R    AD    E+   N+LL+GPTG GKT
Sbjct: 69  PRIIKEFLDQYVVGQERPKKVLSVAVYNHYKRLSAHADSDGVEMQKSNVLLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA+L   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 129 LLAKTLAKLLNVPFTIADATTLTEAGYVGEDVENIILSLLQNA 171


>gi|134055137|emb|CAK37083.1| unnamed protein product [Aspergillus niger]
          Length = 557

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 130/322 (40%), Gaps = 92/322 (28%)

Query: 171 DTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           D SS++    SN  + G + VG   +++  ++++       +  S+  C P         
Sbjct: 176 DDSSELQLEKSNILLLGPSGVGKTLMAKTLARILS------VPFSISDCTPFTQAGYIGE 229

Query: 227 LIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             ++  VHR  +    NY       GI+ LDE DKI A    +G  VS EGVQ+ LL L+
Sbjct: 230 DAEV-CVHR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKLI 286

Query: 280 EGSSVSTKYG----------SINTDHILFIASGAF---------HVSR------------ 308
           EG++V  +            ++ TD+ILFI SGAF          +SR            
Sbjct: 287 EGTTVQVQAKQERSAPREVYNVRTDNILFIFSGAFVGLHKVIMDRISRGSIGFGQPVRAL 346

Query: 309 -------------------------------PADL-----LPEIQGRFPVRVHLKSLNKS 332
                                          P DL     +PE+ GR PV   L +L   
Sbjct: 347 YKKHLPFFTSATSPNSPDSEPTYFNALDLLNPTDLQNYGFIPELVGRVPVTAALSTLTTP 406

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               ILT+  ++L+ QY  L    GI + FT  ++  +A  A  + +     GAR L+T 
Sbjct: 407 LLVRILTEPRNSLLAQYTTLFSLSGIEIRFTTPALHKIAANAFTMGT-----GARALRTE 461

Query: 393 MERVLEDISFSASDLQEKTVVI 414
           +E +L D  F       K V++
Sbjct: 462 LETILSDAMFETPGSSVKFVLV 483



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 54/166 (32%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRN--------------------RWRRQQ----- 42
           +PR +   LD++++GQ  AK+ +++A+ N                    +W R++     
Sbjct: 86  TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 145

Query: 43  ---------------------LPADLRD--------ELMPKNILLVGPTGVGKTAISRRL 73
                                LP   +         +L   NILL+GP+GVGKT +++ L
Sbjct: 146 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 205

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           AR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R
Sbjct: 206 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 251


>gi|167766383|ref|ZP_02438436.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1]
 gi|167711974|gb|EDS22553.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1]
          Length = 333

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 60/228 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289
             GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++ 
Sbjct: 76  QCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFI 135

Query: 290 SINTDHILFIASGAFH------VSR----------------------------PAD---- 311
            I+T +ILFI  GAF        SR                            P D    
Sbjct: 136 QIDTSNILFICGGAFDGLEKIIESRIGKKSIGFGADVFGQKETDLGELLRQVLPEDFVKF 195

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV V L  L++     IL + +S L+ QY+ L + +G+ L F +D++ A+
Sbjct: 196 GLIPEFIGRVPVNVSLNPLDEEALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDALIAI 255

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
           A  A+   +     GAR L+ +ME V+ D+ +   S +D+ E  +  D
Sbjct: 256 AKKALERKT-----GARGLRAIMEDVIMDLMYEIPSQTDVSECLITKD 298



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  ++  
Sbjct: 8   ELQKSNILMLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQA 67

Query: 110 A 110
           A
Sbjct: 68  A 68


>gi|313667283|ref|YP_004049684.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
 gi|313153914|gb|ADR37764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
          Length = 406

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            PREI  ELDR + GQ+ AKRA+++A      R + P     +L   N+LLVGP+G GKT
Sbjct: 63  PPREIKQELDRRVAGQERAKRALSVAFATHALRFKNP-----DLPKANVLLVGPSGTGKT 117

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + +  AR+AG P    + T  T+ GYVG +VE ++  L+  A
Sbjct: 118 LLVKEAARVAGLPVAIADATSLTQAGYVGDDVESVLTRLLATA 160



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 53/211 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289
           G++F+DE DKI AR  G    ++R    EGVQ+ LL LVEG+  +V  K G         
Sbjct: 170 GVIFVDEVDKI-ARKGGENPSITRDVSGEGVQQALLKLVEGTVANVPFKEGRKHPGEDTV 228

Query: 290 SINTDHILFIASGAFH---------VSRPA-------------------------DLLPE 315
            + TD IL+I +GAF            RP                           L+PE
Sbjct: 229 QMKTDGILWIFAGAFEGLEMILEERKGRPGIGFGADTPEPDETLPEVTHEDLIRYGLIPE 288

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR P  V L  L+    R I+ + E++ + +Y+ +    G+ L+ +E  +D +   ++
Sbjct: 289 FMGRVPQLVRLDPLDGDTLRRIVAEVENSYLERYRRIFDAYGVRLEMSEAFVDEVVRRSL 348

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASD 406
             +      G R  Q V+E ++ ++ F   D
Sbjct: 349 KNHRRA---GGRAPQAVLEPIVHELLFHLPD 376


>gi|224120816|ref|XP_002318424.1| predicted protein [Populus trichocarpa]
 gi|222859097|gb|EEE96644.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYG-----SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+       K+       I
Sbjct: 164 GIIYIDEVDKITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPDKEARKHPRGDNIQI 223

Query: 292 NTDHILFIASGAF-----------------------------------------HVSRPA 310
           NT  ILFI  GAF                                           +  +
Sbjct: 224 NTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSAAMTSSLLETAESS 283

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE  GRFP+ V L +L +     +LT+ ++ L  QY++L +  G+ L  TE 
Sbjct: 284 DLVSYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKLFQMNGVKLHVTEH 343

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++ ++A  A+  N+     GAR L++++E +L D  +   D++    +IDA
Sbjct: 344 ALRSIAIKAITKNT-----GARALRSILENILMDSMYEIPDVRRGADIIDA 389



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 41/150 (27%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------- 43
           KL  +F +P++I   LD+++IGQQ AK+ +++A+ N ++R  L                 
Sbjct: 5   KLGSSFPTPKDICKALDKFVIGQQRAKKVLSVAVYNHYKRIHLESVKKWSVLFLSMALVN 64

Query: 44  ---------------PADLRDELM--------PKNILLVGPTGVGKTAISRRLARLAGAP 80
                          P + + E M          NILL+GPTG GKT +++ LAR    P
Sbjct: 65  PFFPFPVTVMVCLYFPCNEKAETMDEEEVELEKSNILLMGPTGSGKTLLAKTLARFVNVP 124

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F+  + T  T+  YVG +VE ++  L+  A
Sbjct: 125 FVIADATTLTQARYVGEDVESMLYKLLTAA 154


>gi|308459430|ref|XP_003092035.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
 gi|308254453|gb|EFO98405.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
          Length = 638

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 68/222 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G            
Sbjct: 371 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 430

Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311
           I+T  ILFIASGAF                                   V R  D     
Sbjct: 431 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLGK 490

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + L 
Sbjct: 491 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 550

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           F+ ++++ +A +A+   +     GAR L++++E  L +  F+
Sbjct: 551 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 587



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILLVGP+GVGKT +++ LAR+   P    + T  T+ GYVG +VE +I+ LV  A   V
Sbjct: 306 NILLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 365

Query: 115 RESRR 119
            ++++
Sbjct: 366 EKAQQ 370


>gi|12322385|gb|AAG51217.1|AC051630_14 CLP protease regulatory subunit CLPX, putative; 15869-19379
           [Arabidopsis thaliana]
          Length = 670

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 38/141 (26%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                           
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLLHDSDALSPFNPLWFTL 310

Query: 41  -----------QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                      Q +  D   EL   N+LL+GPTG GKT +++ LARL   PF+  + T  
Sbjct: 311 ILWTLNPRSAAQPIDDDDNVELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTL 370

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
           T+ GYVG +VE I+  L+ VA
Sbjct: 371 TQAGYVGDDVESILHKLLTVA 391



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287
           TV   ++Q  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ V+    
Sbjct: 389 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 447

Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311
                    +  I+T  ILFI  GAF       V R  D                     
Sbjct: 448 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 507

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L
Sbjct: 508 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 567

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FTE +++ ++  A+     V + GAR L+ ++E +L +  F   D ++   
Sbjct: 568 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 622

Query: 413 VIDA 416
            IDA
Sbjct: 623 RIDA 626


>gi|219116376|ref|XP_002178983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409750|gb|EEC49681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 340

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 64/233 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK-----------YG 289
           GIV++DE DKI  R SG  + +SR    EGVQ  LL +VEG+ ++             + 
Sbjct: 107 GIVYIDEADKI--RKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKEPGRKNPRGDFL 164

Query: 290 SINTDHILFIASGAFH-----VSR-------------------------------PADL- 312
            I+T +ILFI  GAF      ++R                               P DL 
Sbjct: 165 QIDTTNILFICGGAFSGLERIINRRMDAASIGFGAQMKKAIDDPKVQGRYFDSAIPKDLV 224

Query: 313 ----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
               +PE  GRFPV V  K L+K +   ILT   ++++ QY+ L   + +    T++ +D
Sbjct: 225 EYGMIPEFVGRFPVIVATKGLDKKNLIDILTVPRNSIMKQYRRLFAMDDVNFHVTKEGLD 284

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            +A+ A+   +     GAR L+++ + VL +  +    + +  TV +DA  VR
Sbjct: 285 EIAETALGRGT-----GARGLRSITDSVLMETQYVVPSMPDVHTVYVDASAVR 332



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 8/99 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI+  L+ Y+IGQ++ K A+++ + N ++          E+   NILL+GP+G GKT
Sbjct: 3   TPREIMKGLNEYVIGQKNVKVALSVGVYNHYKHC--------EIDKSNILLLGPSGSGKT 54

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
            + + LARL   P +  + T  T+ GYVG +VE I+  L
Sbjct: 55  LLVKTLARLIDVPLVIADATCLTQAGYVGEDVESILFKL 93


>gi|268565751|ref|XP_002639538.1| Hypothetical protein CBG04167 [Caenorhabditis briggsae]
          Length = 517

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 78/246 (31%)

Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292
           GIVFLDEFDKI         SGN   VS +GVQ+ LL LVEGS V  +         +I+
Sbjct: 263 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 321

Query: 293 TDHILFI------------------------ASGAFH------------------VSRPA 310
           T +ILFI                        +S + H                  VS+  
Sbjct: 322 TTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTEKLMDSDEENVSKAR 381

Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           D               ++PE+ GRFPV V    L+KS  + +LT+ + +L+ Q K+  + 
Sbjct: 382 DEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEPKGSLVAQTKKFFEN 441

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414
           E + L F+  +ID +AD+AV   +     GAR L++++E+ + +  +   SD+  K V I
Sbjct: 442 ENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAKYEPGSDV--KCVEI 494

Query: 415 DAEYVR 420
           + E ++
Sbjct: 495 NDENLK 500



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 52/150 (34%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41
           P+EIV  L++Y++GQ+ AK+ +A+A+   +RR                           +
Sbjct: 102 PKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKLRK 161

Query: 42  QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARLA 77
           Q P ++ +E +P+                        N++L+G +G GKT ++++LA + 
Sbjct: 162 QNP-EIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVL 220

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             P +  + T  T+ GYVG +V+ +++ L+
Sbjct: 221 DVPIVICDCTTLTQAGYVGDDVDTVVQKLL 250


>gi|229826183|ref|ZP_04452252.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC
           49176]
 gi|229789053|gb|EEP25167.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC
           49176]
          Length = 503

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
           +P  I  +LD Y+IGQ+ AK+ +++A+ N ++R       ++E   +   N+L++GPTG 
Sbjct: 156 APHIIKEKLDEYVIGQELAKKQISVAVYNHYKRISAEKTKKEEDIEIEKSNMLMIGPTGS 215

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT + + LARL   P    + T  TE GY+G +VE ++  L+  A N V      E  E
Sbjct: 216 GKTYLVKNLARLLQVPIAITDATTLTEAGYIGDDVESVLSKLLADADNDV------EAAE 269

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175
              +  +E  +D  + K   +++R+V  + ++ G +      E++I V  TS +
Sbjct: 270 HGIVFIDE--IDK-IAKKKNTHSRDVSGEAVQQGLLKLLEGSEVEIPVGATSKN 320



 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GIVF+DE DKI  + + +   VS E VQ+ LL L+EGS V    G           +IN
Sbjct: 270 HGIVFIDEIDKIAKKKNTHSRDVSGEAVQQGLLKLLEGSEVEIPVGATSKNAMVPMTTIN 329

Query: 293 TDHILFIASGAF-----------------------------------HVS----RPADLL 313
           T +ILFI  GAF                                    V+    R   ++
Sbjct: 330 TRNILFICGGAFPDLSDIVKRRLNKQAAIGFKSDLKDKYDDEKNILSKVTTEDLRQYGMI 389

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   +  L+K     +L++ ++ ++ QY++L++ + + L+F+ED+ + +A+ 
Sbjct: 390 PEFLGRLPIVCAVDELDKDMLIKVLSEPKNAILKQYEKLLEFDEVKLEFSEDAKEIIAER 449

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A+   +     GAR L+ ++E  + DI +    D     V+I  +Y+
Sbjct: 450 ALERKT-----GARALRAIIEEFMLDIMYEIPKDNNIGKVIITRDYI 491


>gi|148977243|ref|ZP_01813870.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145963525|gb|EDK28788.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 80

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D    T+VID  YV
Sbjct: 3   IEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDKAGSTLVIDEAYV 62

Query: 420 RLHIGDFPSETDMYHFIL 437
              +G+F  + D+  FIL
Sbjct: 63  NSKLGEFVEDEDLSRFIL 80


>gi|93007059|ref|YP_581496.1| ATP-dependent protease ATP-binding subunit [Psychrobacter
           cryohalolentis K5]
 gi|122414802|sp|Q1Q8J1|CLPX_PSYCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|92394737|gb|ABE76012.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           cryohalolentis K5]
          Length = 424

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 14/114 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+E+ ++LD Y+IGQ  AK+A+A+A+ N ++R ++   L +              EL  
Sbjct: 66  TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQILANDSKKAKIGADDAMVELAK 125

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+
Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLL 179



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 59/229 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   +G           +
Sbjct: 192 GIIYIDEIDKISKKGDNPSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPQQELIQV 251

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313
           +T +IL I  GAF                                       P DL+   
Sbjct: 252 DTSNILIIVGGAFAGLDKVIQQRTEKTGIGFNADVSSKDDSRRSSELLQQVEPEDLIKFG 311

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE+ GR PV   L  L++     ILT+ ++ L+ QYK L   EG  + FT++++DA+A
Sbjct: 312 LIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIA 371

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L++++E  L +  +    +++ KTV++D + +
Sbjct: 372 KKAMARKT-----GARGLRSIVENALLETMYELPSMKDAKTVLVDEQVI 415


>gi|58699948|ref|ZP_00374530.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533534|gb|EAL57951.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 45

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 42/45 (93%)

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
           +QRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE
Sbjct: 1   MQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPE 45


>gi|72383093|ref|YP_292448.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. NATL2A]
 gi|124026831|ref|YP_001015946.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           str. NATL1A]
 gi|123759843|sp|Q46ID3|CLPX_PROMT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214801|sp|A2C5C2|CLPX_PROM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72002943|gb|AAZ58745.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Prochlorococcus marinus str. NATL2A]
 gi|123961899|gb|ABM76682.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. NATL1A]
          Length = 451

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P EI   LD  ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+GP
Sbjct: 83  PIEIKKFLDAQVVGQEPAKKILSVAVYNHYKRLAWKGDGSGETDLTATKLQKSNILLIGP 142

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 143 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 191



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK--------YG---SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +          YG    I
Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYGDSIQI 260

Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312
           +T  ILFI  GAF                                       +   P DL
Sbjct: 261 DTSQILFICGGAFVGLDDVVEKRLGKNSIGFIQNENRTRTKSNRDRVGADLINDLEPDDL 320

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   L+ LN      ILT+    L+ Q++ L+  + + L F ED++
Sbjct: 321 VKYGLIPEFIGRMPVSAILEPLNAKALESILTEPRDALVKQFRTLLSMDNVELSFDEDAV 380

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A  A    +     GAR L+ ++E ++ D+ +S
Sbjct: 381 EAIAQEAYKRKT-----GARALRGIVEEIMLDLMYS 411


>gi|291525663|emb|CBK91250.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Eubacterium rectale DSM 17629]
          Length = 509

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DK+  + + N   VS E VQ+ +L L+EGS V    G           +++
Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ +I QY++L++ + + L+F +D++ A+A +
Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L+ ++E  + DI +    D    TV I  +YV 
Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYVE 488



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P  I + LD Y++GQ+ AK+ +++A+ N ++R  + AD +                   
Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            E+   N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+ 
Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255

Query: 109 VAINIVRESRR 119
            A N V  +  
Sbjct: 256 AADNDVERAEH 266


>gi|326504532|dbj|BAJ91098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 20/120 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD---------E 50
           +EI   LD+Y++GQ  AK+ + +A+ N ++R           Q  A  RD         E
Sbjct: 47  KEIRRGLDQYVVGQDKAKKVLCVAVHNHYKRIYSEPSNKSSSQASAG-RDAGTAAEDDTE 105

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE I+  L+  A
Sbjct: 106 LEKSNILLLGPTGSGKTLLAKTLARFANVPFVIADATAVTQAGYSGEDVESIVYKLLVAA 165



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 76/236 (32%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-------VSREGVQRDLLPLVEGSSVST---------KY 288
           GI+++DE DK+  +     +G       VS EGVQ+ LL + EG+ +S           +
Sbjct: 175 GIIYIDEVDKLAKK-----VGCQEDRRDVSGEGVQQALLKMFEGTVISVPRKRSQNGLSH 229

Query: 289 GSINTD--HILFIASGAF-----------------------HVSRPADLL---------- 313
           G +  D  +ILFI  GAF                       H  R   L+          
Sbjct: 230 GCVEVDTTNILFICGGAFSDLGKIISERLHHCPFGFGTPIRHELRDYALMNEQSSLFEEI 289

Query: 314 -----------PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                      PE  GR P+ V L  L +     ++ + ++ +  QYK+L K   + L  
Sbjct: 290 ENDDLIAYGLTPEFIGRLPIIVGLTHLTEDQLIQVIREPKNAIGKQYKKLFKMNDVKLHI 349

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD----LQEKTVVI 414
           TE+++  +A  A     +V + GAR L++++E +L +  F   D     QEK +V+
Sbjct: 350 TENALRLIAKKA-----SVRETGARGLRSILEGILTEAMFEIPDDGGEGQEKIIVV 400


>gi|238923551|ref|YP_002937067.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale
           ATCC 33656]
 gi|238875226|gb|ACR74933.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale
           ATCC 33656]
          Length = 509

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 56/227 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DK+  + + N   VS E VQ+ +L L+EGS V    G           +++
Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ +I QY++L++ + + L+F +D++ A+A +
Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419
           A         +GAR L+ ++E  + DI +    D    TV I  +YV
Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYV 487



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P  I + LD Y++GQ+ AK+ +++A+ N ++R  + AD +                   
Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            E+   N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+ 
Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255

Query: 109 VAINIVRESRR 119
            A N V  +  
Sbjct: 256 AADNDVERAEH 266


>gi|291528240|emb|CBK93826.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Eubacterium rectale M104/1]
          Length = 509

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 56/228 (24%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292
           +GI+F+DE DK+  + + N   VS E VQ+ +L L+EGS V    G           +++
Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325

Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313
           T +ILFI  GAF                +   ADL                        +
Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L++L +     IL + ++ +I QY++L++ + + L+F +D++ A+A +
Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
           A         +GAR L+ ++E  + DI +    D    TV I  +YV 
Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYVE 488



 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P  I + LD Y++GQ+ AK+ +++A+ N ++R  + AD +                   
Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            E+   N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+ 
Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255

Query: 109 VAINIVRESRR 119
            A N V  +  
Sbjct: 256 AADNDVERAEH 266


>gi|224129802|ref|XP_002328806.1| predicted protein [Populus trichocarpa]
 gi|222839104|gb|EEE77455.1| predicted protein [Populus trichocarpa]
          Length = 521

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 25/137 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRD--------- 49
           +P+EI   LD ++IGQ  AK+ +++A+ N ++R            P    D         
Sbjct: 114 TPKEICKGLDEFVIGQDKAKKVLSVAVYNHYKRIYHASKQKKSHAPWSHSDGENDENEFI 173

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-------IGYVGRNVEQI 102
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+        GYVG +VE I
Sbjct: 174 ELDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATTLTQASLFCCTAGYVGEDVESI 233

Query: 103 IRDLVDVAINIVRESRR 119
           +  L+ VA   V  ++R
Sbjct: 234 LYKLLVVAEFNVEAAQR 250



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 78/250 (31%)

Query: 245 GIVFLDEFDKIV---------ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------ 289
           GIV++DE DKI          A  S  G  VS EGVQ+ LL ++EG+ ++          
Sbjct: 251 GIVYIDEVDKITMKVYDFCVQAGSSSIGRDVSGEGVQQALLKMLEGTVINVPVPDKGPGK 310

Query: 290 -------SINTDHILFIASGAF----------------HVSRPA---------------- 310
                   ++T  ILFI  GAF                    P                 
Sbjct: 311 HPRGDTIQVDTKDILFICGGAFVNLEKTISERRQDASIGFGAPVRANMRAGAITNAMVTS 370

Query: 311 --------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                          L+PE  GRFPV   L +LN+     +L + ++ L  QYK++    
Sbjct: 371 SLLESVESGDLVAYGLIPEFVGRFPVLASLLALNEDQLVQVLMEPKNALGKQYKKIFNMN 430

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----- 411
            + L FT +++  +A  A+  N+     GAR L+ ++E +L +  F   + + ++     
Sbjct: 431 NVNLHFTGNALRLIAKKAMTKNT-----GARGLRAILENILTEAMFETPENKSQSNCITA 485

Query: 412 VVIDAEYVRL 421
           V++D E V L
Sbjct: 486 VLVDEEAVGL 495


>gi|190408624|gb|EDV11889.1| ATP-binding protein [Saccharomyces cerevisiae RM11-1a]
 gi|207347530|gb|EDZ73669.1| YBR227Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256272890|gb|EEU07858.1| Mcx1p [Saccharomyces cerevisiae JAY291]
 gi|290878244|emb|CBK39303.1| Mcx1p [Saccharomyces cerevisiae EC1118]
 gi|323305890|gb|EGA59626.1| Mcx1p [Saccharomyces cerevisiae FostersB]
          Length = 520

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 196/487 (40%), Gaps = 142/487 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNR------------------------------ 37
           +P+ +   LD YI+GQ+  K+ +++A+ N                               
Sbjct: 38  TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDKD 97

Query: 38  -------------WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLA 77
                        WR  Q   +L         EL   N+L+VGP+G GKT ++  LA++ 
Sbjct: 98  EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I                    E+  +NAE  +  A
Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCI--------------------ERLLVNAEFDVARA 197

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196
                               G I   EID ++A  ++ I   D+ G G    +L + E  
Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                     K+ ++V++     ++ + D   +  T  +D + +V+   I+F+       
Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278

Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301
               G  +G+ +  V+R  D+  + + G SV +            K+   NT   + + +
Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335

Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           G    A  ++ P DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ +
Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K  G+ L  T+ ++  +A  A+   +     GAR L+ +MER+L ++++         V
Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450

Query: 413 VIDAEYV 419
           +ID   V
Sbjct: 451 LIDEATV 457


>gi|301061949|ref|ZP_07202678.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
 gi|300443966|gb|EFK08002.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
          Length = 611

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 12/116 (10%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------L 51
            F+  P E+ S LD +++ Q   K  +   +   + R +       E            +
Sbjct: 69  NFSMMPEEMASYLDGFVVKQDQVKAVLGTKICTHFNRIRFNDQKESESFSGADKKSGVGM 128

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           +  N+L++GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE +IRDLV
Sbjct: 129 IKNNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDLV 184



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 79/286 (27%)

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI-------DMDTVHRD- 236
           + VG++  + L     G G+   I++  QK     ++ ++ +         D++ + RD 
Sbjct: 124 SGVGMIKNNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDL 183

Query: 237 ------SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
                 SI++ EN GIV++DE DKI +  +  G  VSR GVQR LL  +E + V  K   
Sbjct: 184 VYEADESIELAEN-GIVYIDEIDKISSSRNLIGHDVSRTGVQRALLKPMEETDVDLKVPH 242

Query: 291 ----------------------INTDHILFIASGAF---------HVSR----------- 308
                                 +NT +ILFI SGAF          + R           
Sbjct: 243 DPISQIQAIEHYRRTGKKEKKVVNTKNILFIMSGAFGDLAEIIKKRLQRQGIGFEADVRP 302

Query: 309 ---PADLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
              P ++L E++              GR PV V    LN+ D   IL +  + +I+  + 
Sbjct: 303 TEIPWEILKEVRAQDLVEFGFESEFVGRLPVVVVFDMLNREDLFEILKNPNNPIIISKRM 362

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
             +  GI + F +D++  +A +A N  +     GAR L + +E+VL
Sbjct: 363 DFRAYGIDIKFEDDALRQIAALAENEKT-----GARGLVSAIEKVL 403


>gi|323334654|gb|EGA76028.1| Mcx1p [Saccharomyces cerevisiae AWRI796]
          Length = 519

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 196/487 (40%), Gaps = 142/487 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNR------------------------------ 37
           +P+ +   LD YI+GQ+  K+ +++A+ N                               
Sbjct: 38  TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDKD 97

Query: 38  -------------WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLA 77
                        WR  Q   +L         EL   N+L+VGP+G GKT ++  LA++ 
Sbjct: 98  EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I                    E+  +NAE  +  A
Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCI--------------------ERLLVNAEFDVARA 197

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196
                               G I   EID ++A  ++ I   D+ G G    +L + E  
Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                     K+ ++V++     ++ + D   +  T  +D + +V+   I+F+       
Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278

Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301
               G  +G+ +  V+R  D+  + + G SV +            K+   NT   + + +
Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335

Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           G    A  ++ P DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ +
Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K  G+ L  T+ ++  +A  A+   +     GAR L+ +MER+L ++++         V
Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450

Query: 413 VIDAEYV 419
           +ID   V
Sbjct: 451 LIDEATV 457


>gi|291614616|ref|YP_003524773.1| ATPase AAA [Sideroxydans lithotrophicus ES-1]
 gi|291584728|gb|ADE12386.1| ATPase AAA-2 domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 9/135 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTG 63
             +P  I   LD+Y++GQ +AK+ +++A+ + +R+Q  Q   D+  E+   NILL+GPTG
Sbjct: 13  KLTPSAIAGYLDQYVVGQDEAKKVLSVAVYSHYRKQGRQRLGDV--EVAKSNILLIGPTG 70

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +   L+R+A  PF+    T   +  YV   +E ++  L++ A   V +++R    
Sbjct: 71  TGKTLLCETLSRVARVPFVTANATSLAQSKYVNEEIEALLLRLLEKAGGDVAKAQRGIVF 130

Query: 120 -DEVREQASINAEER 133
            DE+ +  +   E+R
Sbjct: 131 IDEIDKLKASEGEQR 145



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 48/214 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS---INTDHILFIAS 301
           GIVF+DE DK+ A + G   G S E VQ  LL ++EG+ V  + GS   I+T +ILFI +
Sbjct: 127 GIVFIDEIDKLKASE-GEQRGTSGERVQHALLKIMEGAPV--RLGSAQTIDTTNILFICA 183

Query: 302 GAF----------HV---------------------SRPADL-----LPEIQGRFPVRVH 325
           GAF          H                       +P DL     +PE  GR P+  +
Sbjct: 184 GAFVGLEDITAASHAFGFISVDKHDDQQILDRLNSRVKPTDLFKFGLIPEFAGRLPIIAN 243

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L++L+K     I+ +  +++  Q++E  + EG+ L     +   +A++A         +G
Sbjct: 244 LQNLSKELLVKIMVEPRNSIYNQFREAFREEGVELHIELAAFQQIAEMAFEYK-----VG 298

Query: 386 ARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           AR L+ + E +L  + F   D  E + VVI + +
Sbjct: 299 ARSLRGIFEEMLTPVMFLVPDHPEIRRVVIKSLF 332


>gi|254526778|ref|ZP_05138830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538202|gb|EEE40655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9202]
          Length = 455

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R  L   +++E          
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132

Query: 51  ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311
           +T  ILFI  GAF                               +  P D          
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDKNKVDTKKIIDPRDSLKNLELDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT     L+ Q+K L+  + + L F  DS+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A+ A    +     GAR L++++E ++ D+ ++
Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDVMYT 415


>gi|78780134|ref|YP_398246.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553649|sp|Q317Y5|CLPX_PROM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78713633|gb|ABB50810.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9312]
          Length = 455

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R  L   +++E          
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132

Query: 51  ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311
           +T  ILFI  GAF                               +  P D          
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNNVDTKKLVEPRDSLKNLELDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT     L+ Q+K L+  + + L F  DS+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A+ A    +     GAR L++++E ++ D+ ++
Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDVMYT 415


>gi|157414263|ref|YP_001485129.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9215]
 gi|167009018|sp|A8G7G2|CLPX_PROM2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157388838|gb|ABV51543.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9215]
          Length = 455

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R  L   +++E          
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132

Query: 51  ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311
           +T  ILFI  GAF                               +  P D          
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIIDPRDSLKNLELDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT     L+ Q+K L+  + + L F  DS+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A+ A    +     GAR L++++E ++ D+ ++
Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDVMYT 415


>gi|226528894|ref|NP_001140703.1| hypothetical protein LOC100272778 [Zea mays]
 gi|194700644|gb|ACF84406.1| unknown [Zea mays]
          Length = 263

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 18/121 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNR----------------WRRQQLPADLRD-- 49
           +P+EI   LD +++GQ  AK+ +++A+ N                 W R  +  +  D  
Sbjct: 39  TPKEIRRGLDEFVVGQDKAKKVLSVAVHNHYKRIYNESSNKCSVKSWVRGGVATNSDDVI 98

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GY G +VE +I  L+  
Sbjct: 99  ELEKSNILLIGPTGSGKTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVA 158

Query: 110 A 110
           A
Sbjct: 159 A 159



 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)

Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           +GIV++DE DK+  +     +   VS EGVQ+ LL + EG+ +S             Y  
Sbjct: 168 HGIVYIDEVDKLTKKADCRKDRRDVSGEGVQQALLKIFEGTIISVPGKRSRENIPQGYVE 227

Query: 291 INTDHILFIASGAF 304
           ++T +ILFI  GAF
Sbjct: 228 VDTRNILFICGGAF 241


>gi|168042097|ref|XP_001773526.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675228|gb|EDQ61726.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 433

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 34/137 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRA------------VAIALRNRWRRQQLPA---------- 45
           +PREI   LD++++GQ+ AK+A            +++A+ N ++R    +          
Sbjct: 25  TPREISQALDKFVVGQEKAKKAFSLFPSFNSLAILSVAVYNHYKRIHYESLLKSNIRLTD 84

Query: 46  ------DLRDE------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
                 D+ DE      L   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ G
Sbjct: 85  EGAGHSDMEDEENDGVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG 144

Query: 94  YVGRNVEQIIRDLVDVA 110
           YVG +VE I+  L+  A
Sbjct: 145 YVGEDVESILYKLLMAA 161



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 70/240 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  +
Sbjct: 171 GIVYIDEVDKITKKAENMNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQV 230

Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311
           +T  ILFI  GAF                           V++  +              
Sbjct: 231 DTKDILFICGGAFIELEKTIAERRQDSSIGFGAPVRANMRVNKLVNAAVTSSLLELVESS 290

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFPV V L +LN+     +LT+  + L  QYK++     + L +TE 
Sbjct: 291 DLISYGLIPEFIGRFPVLVSLAALNEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEG 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEK--TVVIDAEYV 419
           ++  +A  A+     + + GAR L+++ME +L D  +    S S+  EK   VV+D + V
Sbjct: 351 ALRRIAQKAM-----IKNTGARGLRSIMEALLTDSMYQVPDSVSETDEKIDAVVLDEDAV 405


>gi|126697185|ref|YP_001092071.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9301]
 gi|166214800|sp|A3PFE5|CLPX_PROM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126544228|gb|ABO18470.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9301]
          Length = 455

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 15/120 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R  L    ++E          
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKFKEENKNSNSKDSQ 132

Query: 51  ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311
           +T  ILFI  GAF                               +  P D          
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRDALKNLELDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT     L+ Q+K L+  + + L F  DS+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELSFEPDSV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A+ A    +     GAR L++++E ++ DI ++
Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDIMYT 415


>gi|324510952|gb|ADY44570.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
           [Ascaris suum]
          Length = 528

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 134/311 (43%), Gaps = 80/311 (25%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   L+++ + V+         + +  C   ++        D+DTV + 
Sbjct: 194 SNIILLGPSGVGKTYLTQMLANVLD--------VPIAMCDCTVLTQAGYVGDDVDTVIQK 245

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK 287
            +Q  +        GIVFLDEFDKI +    +  G   VS  GVQ+ LL LVEG+ +  K
Sbjct: 246 LLQNADGDIERTQRGIVFLDEFDKISSSTDFHSHGFRDVSGRGVQQALLKLVEGTVIKVK 305

Query: 288 ----YGS---INTDHILFIASGAFH----------------------------------- 305
                G+   ++T ++LF+ASGAF+                                   
Sbjct: 306 GPPSLGTKVDVDTSNVLFVASGAFNNLDKIIARRLHRKIVGFGADINTEYAECLQNKDEK 365

Query: 306 -VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            VS+  D               ++PE+ GRFPV V    L++     I+ +  +++I Q 
Sbjct: 366 KVSKCRDQLLAQTDQTDLISFGMVPELIGRFPVYVPFHGLDEELLVRIMQEPRNSIISQA 425

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+    + + L FT+ ++  +A +AV   +     GAR L+ ++E VL D  +       
Sbjct: 426 KQQFLLDKVRLHFTDGALKEIARIAVQKKT-----GARALRMIVENVLLDAKYEVPGTGV 480

Query: 410 KTVVIDAEYVR 420
            TV+ID   V+
Sbjct: 481 DTVIIDENVVK 491



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTGVGKTAISRRLA 74
           II +++  + +    R ++  ++L      E     L   NI+L+GP+GVGKT +++ LA
Sbjct: 155 IIKKKERTKVIHCKQRTKFNPKELQLKAHAEAGSFPLEKSNIILLGPSGVGKTYLTQMLA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +   P    + T  T+ GYVG +V+ +I+ L+  A   +  ++R
Sbjct: 215 NVLDVPIAMCDCTVLTQAGYVGDDVDTVIQKLLQNADGDIERTQR 259


>gi|313228012|emb|CBY23161.1| unnamed protein product [Oikopleura dioica]
          Length = 493

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 106/238 (44%), Gaps = 70/238 (29%)

Query: 245 GIVFLDEFDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSINTDH 295
           GIV+LDE DKI AR    GN   VS EGVQ+ LL L+EGS VS K        G+I  D 
Sbjct: 240 GIVYLDEIDKIAARKLSGGNFRDVSGEGVQQGLLKLLEGSVVSVKDPFKKPAAGNIQVDT 299

Query: 296 --ILFIASGAF-----------------------HVS----------------------- 307
             ILFI SGAF                        VS                       
Sbjct: 300 SDILFICSGAFTGLPKLIQSRMQKKSLGFTAKPQTVSLTKKSKIAAMEERHKEEDECMLR 359

Query: 308 -RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR  V V + +L ++DF  IL + ++ ++ QY+ L+    + L+
Sbjct: 360 IEPEDLHKFGLIPEFVGRLQVLVPIMNLTQNDFVRILNEPDNAIVKQYRSLLAP--VELE 417

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            T+++ + +A +A+   +     GAR L + M  +L+ + +        +V IDA+ V
Sbjct: 418 MTDEAFERIAQIAIERGT-----GARGLNSSMHNLLKSVKYEIPGSDITSVYIDADVV 470



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLRDELM 52
           +P+E  + LDR++IGQ+ AK  ++ A+   ++R               Q    ++   L+
Sbjct: 112 TPKEFHAYLDRFVIGQEPAKMELSTAVHYHYKRIQNNLQYKANQEEKKQAAEGEMASVLI 171

Query: 53  PK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            K NIL++GPTG GKT + + LA+    P+   + T  T+ GYVG ++E +I+ L+  + 
Sbjct: 172 DKSNILIMGPTGSGKTHLVQTLAKYLDVPYAVADCTALTQAGYVGEDIESVIQKLLQNSG 231

Query: 112 NIVRESRR 119
             V +++R
Sbjct: 232 GNVEKAQR 239


>gi|33862213|ref|NP_893774.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|46576449|sp|Q7UZK6|CLPX_PROMP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33634431|emb|CAE20116.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 455

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI + LD  ++GQ+ AK+ +++A+ N ++R  L   L++E          
Sbjct: 75  LELTSIPKPLEIKTFLDNQVVGQESAKKILSVAVYNHYKR--LAWRLKEENKENDSNDLQ 132

Query: 51  ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATSLTEAGYVGEDVENILLRLL 192



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 62/222 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNHDCIQI 264

Query: 292 NTDHILFIASGAF-----------------HVSRPAD----------------------- 311
           +T  ILFI  GAF                   + P +                       
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRLGKNSIGFTTNPDESKINAKKIIDSRDALKNLEQDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+K     ILT+    L+ Q+K L+  + + L+F  +S+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLSKETLESILTEPRDALVKQFKTLLSMDNVELNFEPESV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +A+A+ A    +     GAR L++++E ++ D+ ++    +E
Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDLMYTLPSQEE 421


>gi|222623077|gb|EEE57209.1| hypothetical protein OsJ_07170 [Oryza sativa Japonica Group]
          Length = 583

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 32/135 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R       +   ADL             
Sbjct: 155 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 214

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPF--------------IKVEVTKFTEIGYV 95
           EL   N+LL+GPTG GKT +++ LAR    PF              +K+    F + GYV
Sbjct: 215 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 274

Query: 96  GRNVEQIIRDLVDVA 110
           G +VE I+  L+ VA
Sbjct: 275 GEDVESILYKLLAVA 289



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 299 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 358

Query: 292 NTDHILFIASGAF----------------HVSRPA------------------------- 310
           +T  ILFI  GAF                    P                          
Sbjct: 359 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLLESVESG 418

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +LN+     +L + ++ L  Q+K+L     + L FT+ 
Sbjct: 419 DLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDA 478

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A++ N+     GAR L+T++E +L D  +   D +     IDA
Sbjct: 479 ALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 524


>gi|307706170|ref|ZP_07642988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK321]
 gi|307618430|gb|EFN97579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK321]
          Length = 397

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 11/116 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63
           P E++  L+ Y+IGQ  AKRA+A+A+ N ++R     D R+E     L   NIL++GPTG
Sbjct: 55  PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            GKT +++ LA+    PF   +     E GYVG +VE I+  L+  A  NI R  R
Sbjct: 114 SGKTFLAQTLAKSLNVPFAIAD----AEAGYVGEDVENILLKLLQAADFNIERAER 165



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 166 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 225

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 226 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIISEDIQKFGIIP 285

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 286 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 345

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 346 IERKT-----GARGLRSIIEETMLDVMF 368


>gi|123969398|ref|YP_001010256.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. AS9601]
 gi|166214804|sp|A2BTN8|CLPX_PROMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123199508|gb|ABM71149.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. AS9601]
          Length = 455

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 11/118 (9%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--------- 49
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R   ++  D ++         
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEDSKNNNATDSQAT 134

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           +L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311
           +T  ILFI  GAF                               +  P D          
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRDSLKNLELDDL 324

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT     L+ Q+K L+  + + L F  DS+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELSFEPDSV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +A+A+ A    +     GAR L++++E ++ DI ++
Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDIMYT 415


>gi|156050417|ref|XP_001591170.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980]
 gi|154692196|gb|EDN91934.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 624

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 120/276 (43%), Gaps = 96/276 (34%)

Query: 237 SIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSV----------- 284
           S+Q  E  GI+F DE DK+       +G  VS EGVQ+ LL ++EG++V           
Sbjct: 245 SVQKCET-GIIFFDEIDKLAKPAVMTHGRDVSGEGVQQGLLKMIEGTNVTINAKSDKNAS 303

Query: 285 ------------------STKYGSINTDHILFIASGAF---------------------- 304
                             S +Y +I+T +ILF+ +GAF                      
Sbjct: 304 NSSRGIDRGGRETSPPSKSEQY-TIDTSNILFVFAGAFIGLEKIISQRLSTGSSIGFNSS 362

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                              H + P DL     +PE+ GR P+   L  L+      ILT+
Sbjct: 363 LSSFFSAIPTKEPEKDILVHTT-PTDLQNYGLIPELLGRIPITTSLSPLSLPQLVSILTE 421

Query: 341 TESNLILQYKELMKT---EGIILDFTEDSIDALADVAVNLNSTVGD------------IG 385
             ++L+ QY  L +T    GIIL FT+ +++A+A  A+   S+ GD            IG
Sbjct: 422 PRNSLVKQYTALFETYGPHGIILRFTKLALEAIASRAL-YGSSSGDTQESKGKGEKAGIG 480

Query: 386 ARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVR 420
           AR L++VME VL++I F   S    + V++D  +++
Sbjct: 481 ARGLRSVMESVLQEIMFIGPSSPNIRYVLVDEAFIK 516



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 44  PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           P+  R  +   N++L+GP+GVGKT I + LAR+   PF  V+ +  T+ GY+G ++E  I
Sbjct: 176 PSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTDIESSI 235

Query: 104 RDLV 107
             L+
Sbjct: 236 ERLL 239


>gi|295698386|ref|YP_003603041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Riesia pediculicola USDA]
 gi|291157211|gb|ADD79656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Riesia pediculicola USDA]
          Length = 420

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLV 59
           F   P EI   LD YI+GQ  +K+ +++++ N  +R      +  ++   E+   NILL+
Sbjct: 63  FTKKPYEIKKHLDDYIVGQDRSKKVLSVSIYNHCKRLISNNFKRTSNNSIEIEKNNILLI 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           GPTG GKT +++ L+     PF   + T  TE GYVG +VE  I+ L+
Sbjct: 123 GPTGSGKTLLAKTLSNYLNIPFAIADATTLTEAGYVGEDVENTIQKLL 170



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 61/231 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG  SSV  + G          I
Sbjct: 183 GIIYIDEIDKISRKSDNLSITRDVSGEGVQQALLKLIEGTISSVPPQGGRKHPQQEFLQI 242

Query: 292 NTDHILFIASGAF---------------------------HVSR----------PADLL- 313
           +T +ILFI  G F                           + +R          P DL+ 
Sbjct: 243 DTSNILFICGGTFFGLDQIILKRLNKSSGIGFCAKLIDHSYYNRNTSKILCQVEPQDLIK 302

Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE  GR    V L   N++    IL + +++LI QY++L + E + L F E+S   
Sbjct: 303 FGLIPEFVGRLSTFVILDEQNETSLVKILKEPKNSLIKQYQKLFEMENVQLKFEEESFKE 362

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +A  A+     +   GAR L++++E +L D+ +    ++  K V+I+ + +
Sbjct: 363 IAKKAI-----LKRTGARGLKSILEDILLDVMYKLPSMKSVKQVIINKKVI 408


>gi|159904324|ref|YP_001551668.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9211]
 gi|238687133|sp|A9BDA1|CLPX_PROM4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|159889500|gb|ABX09714.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9211]
          Length = 453

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 7/109 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P +I   LD+ ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+GP
Sbjct: 84  PIDIKDFLDKQVVGQEVAKKILSVAVYNHYKRLAWQGDGNQETDLTATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           TG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 144 TGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 192



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 68/253 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYHDCIQI 261

Query: 292 NTDHILFIASGAF---------------------------HVSRPAD------------- 311
           +T  ILFI  GAF                           H++R  D             
Sbjct: 262 DTSQILFICGGAFVGLEDIVQKRLGKNSIGFMPTDSRGQNHLNRDLDNNQMINNLEPDDL 321

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ LN      IL +    +I Q++ LM  + + L+F E ++
Sbjct: 322 IRYGLIPEFIGRMPVTAVLEPLNSEALEAILKEPRDAVIKQFRTLMSMDNVKLEFDEGAV 381

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYVRL 421
            A+A  A    +     GAR L+ ++E ++ D+ +      + SD      ++D   +  
Sbjct: 382 TAIAQEAFRRKT-----GARALRGIVEELMVDLMYKLPSEKNVSDFTVTKKMVDEMIIGG 436

Query: 422 HIGDFPSETDMYH 434
            +   PS   + H
Sbjct: 437 KVLKLPSNEKIDH 449


>gi|145341067|ref|XP_001415637.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901]
 gi|144575860|gb|ABO93929.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901]
          Length = 524

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 32/144 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------------------- 48
           +P+E+V  LD YI+GQ  AK+ +++A+ N ++R     + R                   
Sbjct: 112 TPKEMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAEGERRAREASAAFAQRLDEEDGAF 171

Query: 49  ------DE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
                 DE       L   NILL GPTG GKT +++ LA+ A  PF   + T  T+ GYV
Sbjct: 172 EDENVVDENSLDDVTLEKSNILLCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYV 231

Query: 96  GRNVEQIIRDLVDVAINIVRESRR 119
           G +VE I+  L+  A   V+ ++R
Sbjct: 232 GEDVESILHKLLQNANYDVQAAQR 255



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 68/223 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289
           GIV++DE DK+ +R S N + ++R    EGVQ+ LL +VEG++V+           +++ 
Sbjct: 256 GIVYIDEIDKL-SRKSDN-VSITRDVSGEGVQQALLKMVEGTTVNVPEKGGRKNPNSQFV 313

Query: 290 SINTDHILFIASGAF----------------HVSRPA----------------------- 310
            ++T +ILFI  GAF                   +P                        
Sbjct: 314 QLDTTNILFICGGAFTGLESVIQQRLSKSSIGFGKPVIARDEPNSKQAVEAAAKALQEVE 373

Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GRFPV V L +L + +   ILT     +  QY+ L++  G  L +T
Sbjct: 374 TGDIVSYGLIPEFVGRFPVCVPLSALGEKELVDILTKPRDAVGKQYQRLLEMHGADLTYT 433

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           ++++  +A  AV   +     GAR L+T++ER+L D  F   D
Sbjct: 434 DEALSLIARAAVKRGT-----GARGLRTLLERLLTDAMFEVPD 471


>gi|308799613|ref|XP_003074587.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri]
 gi|116000758|emb|CAL50438.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri]
          Length = 506

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 27/130 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADL----------RD 49
           +PR++V  LD YI+GQ  AK+ +++A+ N ++R         +  ADL          R 
Sbjct: 101 TPRQMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAESEQRAREAADLSAVERELENDRT 160

Query: 50  E---------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           E         L   NI+L GPTG GKT +++ LA+ A  PF   + T  T+ GYVG +VE
Sbjct: 161 ESANSFDDVTLEKSNIILCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYVGEDVE 220

Query: 101 QIIRDLVDVA 110
            I+  L+  A
Sbjct: 221 SILHKLLQNA 230



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 81/241 (33%)

Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVS----------- 285
           GIV++DE DK+        V RD      VS EGVQ+ LL +VEG+ V+           
Sbjct: 240 GIVYIDEIDKLARKSDTVSVTRD------VSGEGVQQALLKMVEGTVVNVPEKGGRKNPN 293

Query: 286 TKYGSINTDHILFIASGAF----------------HVSRPAD------------------ 311
           +++  ++T +ILFI  GAF                   +P                    
Sbjct: 294 SQFVPLDTANILFICGGAFTGLENVIQQRQSKSSIGFGKPVSARDEPNSKEAIEAAAKAM 353

Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GRFPV V L++L + +   ILT     +  Q++ LM   G+ 
Sbjct: 354 QEVETGDIVSYGLIPEFVGRFPVCVPLQALGEKELVDILTKPRDAIGKQFQRLMDMHGVE 413

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD---LQEKTVVIDA 416
           L +T+D++  +A  AV   +     GAR L+T++ER+L D  F   D   + E  V+ID 
Sbjct: 414 LQYTDDALAHIASAAVKRGT-----GARGLRTLLERLLTDAMFEVPDDPMISE--VIIDG 466

Query: 417 E 417
           E
Sbjct: 467 E 467


>gi|302697103|ref|XP_003038230.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8]
 gi|300111927|gb|EFJ03328.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8]
          Length = 450

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 163/425 (38%), Gaps = 127/425 (29%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----------------------------- 46
           LD++IIGQ++AK+ +++ + N + R Q  A                              
Sbjct: 5   LDQFIIGQENAKKVLSVGVFNHYNRVQANASYREAQEDARREYEESARTIYDHEPPSAPP 64

Query: 47  -------------------LRDELMP------KNILLVGPTGVGKTAISRRLARLAGAPF 81
                              L  + +P       N+L++GPTG GKTA+++ LAR    PF
Sbjct: 65  GVSSANVQPMRRSKPPHLTLHADAIPYPYYEKSNVLMIGPTGSGKTALAKTLARTLDVPF 124

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK 141
              + T FT+ GYVG +VE  I  L+  A      +   E  EQ  +  +E  +D +  K
Sbjct: 125 AVSDATAFTQAGYVGEDVEMAIHRLLQAA------NWNPERAEQGIVFIDE--IDKIARK 176

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
           + +  T                       D++ D+      GG  V       L   + G
Sbjct: 177 SGSGGT-----------------------DSTRDV------GGEGV----QQALLRMLEG 203

Query: 202 SGRKKKIRMSVQKCY--PELMRDESDRLIDMDTVHRDSIQMVENYGIVFL-----DEFDK 254
           S    + + +VQ  Y      +D ++      +  ++ I  ++   I+F+     +  DK
Sbjct: 204 SIVTVQAKGAVQSDYSSSSTGKDSAEGARGRLSAAKNDIFQIDTSNILFIMSGAFEGLDK 263

Query: 255 IVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL-------FIASGAFHV 306
           ++ +    G IG +          L   S  +  + S N+ +IL        +A G    
Sbjct: 264 VIEKRIAKGSIGFTAT--------LTRESKNNWPFFSPNSQNILEQVEISDLLAYG---- 311

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE   R P    L  L   D R ILT+ + +L+ QY  L     + + FT D+
Sbjct: 312 -----LIPEFVNRLPSITALAPLTIPDLRRILTEVKGSLLSQYTSLFGYWSVEIRFTGDA 366

Query: 367 IDALA 371
           IDA+ 
Sbjct: 367 IDAIC 371


>gi|123967080|ref|YP_001012161.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9515]
 gi|166214803|sp|A2BZ43|CLPX_PROM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123201446|gb|ABM73054.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9515]
          Length = 455

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 15/112 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------------LMPKN 55
           P EI + LD  ++GQ+ AK+ +++A+ N ++R  L   L++E             L   N
Sbjct: 83  PLEIKTFLDNQVVGQESAKKILSVAVYNHYKR--LTWRLKEENKDNNSNDCHATKLQKSN 140

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           ILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+
Sbjct: 141 ILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 62/224 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264

Query: 292 NTDHILFIASGAF-------------HV-------------------SRPA--------- 310
           +T  ILFI  GAF             H                    SR A         
Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRLGRHSIGFTTNSDESKIDAKKLVDSRDALKNLELDDL 324

Query: 311 ---DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L K     ILT+    L+ Q+K L+  + + L+F  +S+
Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTEPRDALVKQFKTLLSMDNVELNFEPESV 384

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           +A+A+ A    +     GAR L++++E ++ D+ ++    +E T
Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDLMYTLPSQEEVT 423


>gi|225164863|ref|ZP_03727085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae
           bacterium TAV2]
 gi|224800532|gb|EEG18906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae
           bacterium TAV2]
          Length = 490

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 64/232 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  I
Sbjct: 223 GIVYIDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTICNVPPNGGRKHPNQEYVRI 282

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T +ILFI  GAF      + R                               P DL+  
Sbjct: 283 DTSNILFICGGAFVGLDSIIQRRLGQRSLGFGNGVAFDPRKPMTAEEIMDGLAPVDLIRF 342

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L  +D   +L  T+++L+ QY +L   +G+ L  T D++ A+
Sbjct: 343 GMIPEFIGRLPVVSVLDPLTVADLEKVLLRTKNSLVKQYGKLFSMDGVRLRITNDALRAI 402

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           A  AV L +     GAR L+ ++E ++ +I +     +D+ E  VVIDA  V
Sbjct: 403 AQKAVELKT-----GARALRAILENIMLEIMYELPQRADVDE--VVIDASVV 447



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 49/158 (31%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRD------- 49
           P EI + LD ++IGQ  AK+ +++A+ N ++R +  A            D R        
Sbjct: 63  PSEIKAALDDHVIGQDHAKKVLSVAVYNHYKRLRSAALSNPASASGKAGDARGRHAASGS 122

Query: 50  ------------------------------ELMPKNILLVGPTGVGKTAISRRLARLAGA 79
                                         E+   NILL GPTG GKT ++R LAR+   
Sbjct: 123 TAPASAAQSAATRGPLTDGIATPPLEFAEVEIEKSNILLAGPTGSGKTLLARTLARVLDV 182

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           PF   + T  TE GYVG +VE ++  L+  A   VR++
Sbjct: 183 PFAIADATTLTEAGYVGEDVENVVLRLLQAAGGDVRKA 220


>gi|15645984|ref|NP_208165.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori 26695]
 gi|6225167|sp|O25926|CLPX_HELPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2314544|gb|AAD08417.1| ATP-dependent protease ATPase subunit (clpX) [Helicobacter pylori
           26695]
          Length = 446

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 16/133 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50
           L++  +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +            
Sbjct: 76  LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 135

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L
Sbjct: 136 EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 195

Query: 107 VDVAINIVRESRR 119
           +  +   V+++++
Sbjct: 196 LQASDWNVQKAQK 208



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 209 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 268

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 269 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 328

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 329 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 388

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 389 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 428


>gi|40889781|pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
          Length = 376

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 16/133 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50
           L++  +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +            
Sbjct: 6   LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 65

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L
Sbjct: 66  EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 125

Query: 107 VDVAINIVRESRR 119
           +  +   V+++++
Sbjct: 126 LQASDWNVQKAQK 138



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 198

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 199 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 258

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 259 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 318

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 319 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 358


>gi|46390353|dbj|BAD15818.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           (CLPX) [Oryza sativa Japonica Group]
          Length = 666

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 32/135 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R       +   ADL             
Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPF--------------IKVEVTKFTEIGYV 95
           EL   N+LL+GPTG GKT +++ LAR    PF              +K+    F + GYV
Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 350

Query: 96  GRNVEQIIRDLVDVA 110
           G +VE I+  L+ VA
Sbjct: 351 GEDVESILYKLLAVA 365



 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 71/238 (29%)

Query: 245 GIVFLDEFDKIVARD-----SGNGIGVSR----EGVQRDLLPLVEGSSVST-KYGS---- 290
           G+V++DE DKI  +          + +SR    EGVQ+ LL ++EG+ V+  + G+    
Sbjct: 375 GMVYIDEVDKITKKADVFNMQAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHP 434

Query: 291 ------INTDHILFIASGA------------------FHVSRPAD--------------- 311
                 I+T  ILFI  GA                  F     A+               
Sbjct: 435 RGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSL 494

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GRFP+ V L +LN+     +L + ++ L  Q+K+L     +
Sbjct: 495 LESVESGDLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNV 554

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            L FT+ ++  +A  A++ N+     GAR L+T++E +L D  +   D +     IDA
Sbjct: 555 KLHFTDAALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 607


>gi|228982521|ref|ZP_04142780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|228776704|gb|EEM25012.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
          Length = 395

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI ++LDR +IGQ DAK+ + + + N ++R  + + ++  +   NILL+G +G GKT 
Sbjct: 64  PHEIKNKLDRDVIGQDDAKKVLTVEIYNHYKR--IYSKVKTNIPKNNILLIGESGCGKTH 121

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   ++++   P   V+ T  TE GY G++V+ I+  L+  A
Sbjct: 122 LVETISKIINIPMTIVDATTITETGYSGKDVDSILSSLIQEA 163



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR-EGVQRDLLPLVEGSSVSTKYG---------SINTD 294
           GIVF+DE DK+  R S       + EGVQ+ LL ++EG++ + +           +INT 
Sbjct: 173 GIVFIDEVDKLAKRTSHTSTKDPQGEGVQQALLKMIEGTNFTIEQNRQSIKRTTVTINTS 232

Query: 295 HILFIASGAF------------------------HVSRPAD----------------LLP 314
           +ILFI  GAF                         V    D                L+P
Sbjct: 233 NILFIFGGAFDGLQEIVDKRMNKHKKTIGFTNADTVEASKDNSKMSPISIEDLIQFGLIP 292

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P+ + L  L K D   IL      +I +Y +L K E   L FT+++I+ +A  A
Sbjct: 293 EFIGRIPLILTLNPLTKEDLMDILMKPNGAIIPEYIKLFKEEQKDLRFTDEAIEYIATEA 352

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++       +GAR ++ ++ + + D+ +
Sbjct: 353 LHKG-----LGARGMKGIVAKKMSDLLY 375


>gi|207109179|ref|ZP_03243341.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 220

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 92  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 151

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 152 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 210


>gi|195590182|ref|XP_002084825.1| GD12633 [Drosophila simulans]
 gi|194196834|gb|EDX10410.1| GD12633 [Drosophila simulans]
          Length = 694

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 63/209 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS-TKYGSI-------NTDHI 296
           GIV+LDE D+I A  SG+      +G+Q+ +L ++EGS VS T  G +       +T +I
Sbjct: 444 GIVYLDEVDQICAL-SGS------KGIQQGMLKMLEGSVVSLTNRGQLFGKAVQMDTTNI 496

Query: 297 LFIASGAF----------------------HVSRP----------------ADL-----L 313
           LF+ASGAF                          P                 DL     +
Sbjct: 497 LFVASGAFTGLDKIIERRINEKNSDVTSTGEAGPPNAHQQERDKCLIKVQACDLAEFGMI 556

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  G FP+ V   SL+      ILT+  + L+ QYK +   +G+ L F+ D++ + A +
Sbjct: 557 PEFVGHFPIIVPFHSLDAYMLVRILTEPPNALVSQYKAMFHLDGVELTFSHDALISAAQL 616

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+      G++GAR L+ +ME++L D  F
Sbjct: 617 AMK-----GNMGARGLRPIMEQLLLDPMF 640



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NI+++GPTG GKT +++ +A+    PF   + T   + GYVG ++E ++  L+  
Sbjct: 374 ELEKSNIMMLGPTGSGKTLVAKSIAKCLDVPFALCDCTTLMQAGYVGGDIESVLVKLLKD 433

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALV 139
           A N V  ++      DEV +  +++  + I   ++
Sbjct: 434 ANNDVERAQTGIVYLDEVDQICALSGSKGIQQGML 468


>gi|332672822|gb|AEE69639.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           83]
          Length = 448

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVCITKDCV 430


>gi|307638046|gb|ADN80496.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           908]
 gi|325996650|gb|ADZ52055.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2018]
 gi|325998239|gb|ADZ50447.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2017]
          Length = 452

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 87  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 146

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 207 WNVQKAQK 214



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 394

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434


>gi|210135559|ref|YP_002301998.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori P12]
 gi|210133527|gb|ACJ08518.1| ATP-dependent clp protease ClpX [Helicobacter pylori P12]
          Length = 448

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDDQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|15612353|ref|NP_224006.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori J99]
 gi|8134369|sp|Q9ZJL8|CLPX_HELPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4155892|gb|AAD06862.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
           J99]
          Length = 452

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 87  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 207 WNVQKAQK 214



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 215 GIVFIDEIDKISRLSEHRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 394

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434


>gi|317179825|dbj|BAJ57611.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F32]
          Length = 448

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|323356155|gb|EGA87960.1| Mcx1p [Saccharomyces cerevisiae VL3]
          Length = 421

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 177/414 (42%), Gaps = 99/414 (23%)

Query: 38  WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           WR  Q   +L         EL   N+L+VGP+G GKT ++  LA++   P    + T+ T
Sbjct: 25  WRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKILNVPIAITDCTQLT 84

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           + GY+G +VE  I                    E+  +NAE  +  A             
Sbjct: 85  QAGYIGEDVEVCI--------------------ERLLVNAEFDVARA------------- 111

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIR 209
                  G I   EID ++A  ++ I   D+ G G    +L + E            K+ 
Sbjct: 112 -----EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE----------GHKVE 155

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++  P  ++ + D   +  T  +D + +V+   I+F+           G  +G+ + 
Sbjct: 156 ITVKR--P--VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI---------MGAFVGLDKH 202

Query: 270 GVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIASG----AFHVSRPA 310
            V+R  D+  + + G SV +            K+   NT   + + +G    A  ++ P 
Sbjct: 203 IVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDNGKKVCALDLTTPT 262

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  T+ 
Sbjct: 263 DLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCVTQK 322

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++  +A  A+   +     GAR L+ +MER+L ++++         V+ID   V
Sbjct: 323 ALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATV 371


>gi|254779913|ref|YP_003058019.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori B38]
 gi|254001825|emb|CAX30068.1| ATP-dependent Clp protease ATP-binding subunit clpX; ATPase
           subunit/chaperone protein [Helicobacter pylori B38]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|317014767|gb|ADU82203.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Gambia94/24]
          Length = 452

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 87  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 207 WNVQKAQK 214



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 394

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434


>gi|317011705|gb|ADU85452.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SouthAfrica7]
          Length = 452

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 87  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNMELEHLEEVEL 146

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 207 WNVQKAQK 214



 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 394

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434


>gi|208435267|ref|YP_002266933.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
 gi|208433196|gb|ACI28067.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|261837486|gb|ACX97252.1| ATP-dependent C1p protease [Helicobacter pylori 51]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|217034446|ref|ZP_03439859.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
 gi|216943116|gb|EEC22590.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
 gi|317176837|dbj|BAJ54626.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F16]
 gi|317181320|dbj|BAJ59104.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F57]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|188528163|ref|YP_001910850.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Shi470]
 gi|188144403|gb|ACD48820.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           Shi470]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|207091895|ref|ZP_03239682.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 446

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 81  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 140

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 141 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 200

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 201 WNVQKAQK 208



 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 209 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 268

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 269 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 328

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 329 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 388

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 389 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 428


>gi|315586024|gb|ADU40405.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           35A]
 gi|317178339|dbj|BAJ56127.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F30]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|261838902|gb|ACX98667.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|308062658|gb|ADO04546.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Cuz20]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|308064149|gb|ADO06036.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Sat464]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|308185155|ref|YP_003929288.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
 gi|308061075|gb|ADO02971.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|109946697|ref|YP_663925.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           acinonychis str. Sheeba]
 gi|109713918|emb|CAJ98926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
           acinonychis str. Sheeba]
          Length = 436

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 13/125 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-------------PK 54
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L  +                 
Sbjct: 74  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKERLNKQESDLELEHLEEVELGKS 133

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +   V
Sbjct: 134 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 193

Query: 115 RESRR 119
           +++++
Sbjct: 194 QKAQK 198



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 199 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 258

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 259 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVSYGLIP 318

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P+   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 319 ELIGRLPILSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 378

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 379 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 418


>gi|308473141|ref|XP_003098796.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
 gi|308268092|gb|EFP12045.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
          Length = 523

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 76/241 (31%)

Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292
           GIVFLDEFDKI         SGN   VS +GVQ+ LL LVEGS V  +         +I+
Sbjct: 265 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLSPNSKVTID 323

Query: 293 TDHILFI-------------------------ASGAFH------------------VSRP 309
           T +ILF+                         AS + H                  VS+ 
Sbjct: 324 TTNILFVSSGAFSNIEHIIARRMDKRSLGFSSASTSPHEESDQHTSEKLRDSDEEVVSKA 383

Query: 310 AD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
            D               ++PE+ GRFPV V    LNK+    +LT+ + +L+ Q K+  +
Sbjct: 384 RDEMLKQCDQGDLIAFGMIPELVGRFPVIVPFHCLNKTHLMSVLTEPKGSLVAQTKKFFE 443

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            E + L F+ ++I+ +A++AV   +     GAR L++++E+ + +  +       K V I
Sbjct: 444 NENVELRFSPEAIEMIAEMAVKRKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEI 498

Query: 415 D 415
           +
Sbjct: 499 N 499



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 50/149 (33%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40
           P+EIV  L++Y++GQ++AK+ +A+A+   +RR                            
Sbjct: 104 PKEIVEHLNKYVVGQEEAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKIFRK 163

Query: 41  ------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLAG 78
                             +Q+  DL   +D L+ K N++L+G +G GKT ++++LA +  
Sbjct: 164 QNPEIEEEYIPEYIEKSQRQILKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVLD 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            P +  + T  T+ GYVG +V+ +I+ L+
Sbjct: 224 VPIVICDCTTLTQAGYVGDDVDTVIQKLL 252


>gi|317010052|gb|ADU80632.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori India7]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQNNQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|308183486|ref|YP_003927613.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
 gi|308065671|gb|ADO07563.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
          Length = 452

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 87  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 205



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 394

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434


>gi|217032416|ref|ZP_03437910.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
 gi|298737033|ref|YP_003729563.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           pylori B8]
 gi|216945895|gb|EEC24513.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
 gi|298356227|emb|CBI67099.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           pylori B8]
          Length = 448

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
           Brasil 5]
          Length = 324

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  +
Sbjct: 119 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 178

Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312
           +T +ILFI  GAF                                V R   P DL     
Sbjct: 179 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 238

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A 
Sbjct: 239 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 298

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            A+     V   GAR L+++ME++L D  F
Sbjct: 299 KAI-----VRKTGARGLRSIMEKILLDTMF 323



 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 27  KRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           K+ +++A+ N ++R      +   EL   NI+LVGPTG GKT +++ LAR+   PF   +
Sbjct: 25  KKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMAD 84

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
            T  TE GYVG +VE II  L+  A  N+ R  R
Sbjct: 85  ATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 118


>gi|154298243|ref|XP_001549545.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10]
 gi|150858152|gb|EDN33344.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10]
          Length = 612

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 97/280 (34%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGS--- 290
           +SIQ  E  GI+F DE DK+ A+ +   +G  VS EGVQ+ LL ++EG++V+    S   
Sbjct: 244 NSIQKCET-GIIFFDEIDKL-AKPAVMTHGRDVSGEGVQQGLLKMIEGTTVTVNAKSDKN 301

Query: 291 -------------------------INTDHILFIASGAF--------------------- 304
                                    I+T +ILF+ +GAF                     
Sbjct: 302 ASNSNRSMDRGGREASPPARSEQYTIDTSNILFVFAGAFIGLEKIISQRLSTGSSIGFNS 361

Query: 305 ------------------------HVS----RPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
                                   H +    +   L+PE+ GR P+   L  L+      
Sbjct: 362 SLSSSSSSFFSSNPSKENQKDILVHATSTDLQAYGLIPELLGRIPITTSLSPLSLPQLVS 421

Query: 337 ILTDTESNLILQYKELMKT---EGIILDFTEDSIDALADVAVNLNSTVGD---------- 383
           ILT+  ++L+ QY  L +T    GIIL FT+ +++A+A  A+  +S+             
Sbjct: 422 ILTEPRNSLVKQYTALFETYGSHGIILQFTKLALEAIASRALYGSSSPSSKENKGKGEKG 481

Query: 384 --IGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVR 420
             IGAR L+++ME VL++I F   S    + V++D  +V+
Sbjct: 482 TGIGARGLRSIMENVLQEIMFIGPSSPNIRYVLVDEAFVK 521



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%)

Query: 44  PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           P+  R  +   N++L+GP+GVGKT I + LAR+   PF  V+ +  T+ GY+G ++E  I
Sbjct: 176 PSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTDIESSI 235

Query: 104 RDLVDVAINIVRES 117
             L+  + N +++ 
Sbjct: 236 ERLLLASSNSIQKC 249


>gi|195054491|ref|XP_001994158.1| GH23301 [Drosophila grimshawi]
 gi|193896028|gb|EDV94894.1| GH23301 [Drosophila grimshawi]
          Length = 675

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 392 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 445

Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311
           +   ++T +ILF+ASGA+                                  + P +   
Sbjct: 446 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSTSGSGRRAAQSAAAPMENDQ 505

Query: 312 -----LLPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                 L ++Q R              FPV V   SLN S    ILT+  + L+ QYK L
Sbjct: 506 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 565

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FTED+++++A +A+  ++     GAR L+++ME++L D  F       ++V
Sbjct: 566 LGLDEVELSFTEDAVESIAALAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRSV 620

Query: 413 VIDAEYVR 420
            I  +YVR
Sbjct: 621 HITGDYVR 628



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 322 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 381

Query: 109 VAINIVR 115
              N+ R
Sbjct: 382 ANYNVER 388


>gi|312074325|ref|XP_003139920.1| hypothetical protein LOAG_04335 [Loa loa]
 gi|307764922|gb|EFO24156.1| hypothetical protein LOAG_04335 [Loa loa]
          Length = 364

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 138/318 (43%), Gaps = 79/318 (24%)

Query: 171 DTSSDI--SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC----YPELMRDES 224
           D  SD+  SN  + G + VG   L+++ +K++       + +++  C        + D+ 
Sbjct: 31  DKDSDLGKSNILLMGPSGVGKTYLTQILAKIL------DVPIAMCDCTVLTQSGYVGDDV 84

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEG 281
           D +I     + D        GIVFLDEFDKI +    +S +   V   GVQ+  L LVEG
Sbjct: 85  DTVIQKLLANADGDTDAAQRGIVFLDEFDKISSSLDFESRSFRDVGGRGVQQAFLKLVEG 144

Query: 282 SSVSTKY-GS------INTDHILFIASGAFH----------------------------- 305
           + V  K  GS      ++T +ILFIASGAF+                             
Sbjct: 145 TVVKVKQPGSNGTRVDVDTTNILFIASGAFNNLDRIVSQRLHKKLVGFGAGKDEELCCHY 204

Query: 306 --------VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                   VS+  D               ++PE+ GRFPV V   SL +     I+ + +
Sbjct: 205 LTGKDETKVSKDRDDLLKQADHIDLIKYGMVPELVGRFPVLVPFTSLTEELLVRIMKEPK 264

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           S+++ Q ++    + I L FT+ ++  +A  A    +     GAR L+++ E+VL D  +
Sbjct: 265 SSIVSQAEKQFLLDDIRLCFTDCALKEIARTAAQKGT-----GARALRSITEKVLLDAKY 319

Query: 403 SASDLQEKTVVIDAEYVR 420
                +   +VIDA  V+
Sbjct: 320 DLPGTEIHKLVIDANVVK 337



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           +L   NILL+GP+GVGKT +++ LA++   P    + T  T+ GYVG +V+ +I+ L+
Sbjct: 35  DLGKSNILLMGPSGVGKTYLTQILAKILDVPIAMCDCTVLTQSGYVGDDVDTVIQKLL 92


>gi|207743050|ref|YP_002259442.1| partial clpx protein [Ralstonia solanacearum IPO1609]
 gi|206594447|emb|CAQ61374.1| putative partial clpx protein [Ralstonia solanacearum IPO1609]
          Length = 147

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFI 82
           T +++ LARL   PF+
Sbjct: 129 TLLAQTLARLLNVPFV 144


>gi|297734727|emb|CBI16961.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 35/138 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKR--------------------AVAIALRNRWRR------- 40
           +P+EI   LD+++IGQ+ AK+                     +++A+ N ++R       
Sbjct: 125 TPKEICKGLDKFVIGQERAKKLDFIPFSDFLVRSNWCQTWEVLSVAVYNHYKRIYHGSLQ 184

Query: 41  -----QQLPADLRD---ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
                +   +++ D   EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ 
Sbjct: 185 KGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 244

Query: 93  GYVGRNVEQIIRDLVDVA 110
           GYVG +VE I+  L+ VA
Sbjct: 245 GYVGEDVESILYKLLTVA 262



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 70/257 (27%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284
           L  + TV   ++Q  +  G+V++DE DKI  +     +   VS EGVQ+ LL ++EG+ V
Sbjct: 255 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIV 313

Query: 285 ST-KYGS----------INTDHILFIASGAF----------------HVSRPA------- 310
           +  + G+          I+T  ILFI  GAF                    P        
Sbjct: 314 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTG 373

Query: 311 -----------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GRFP+ V L +L +     +LT+ ++ L  
Sbjct: 374 GLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGK 433

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK+L     + L FTE ++  +A  A+     V + GAR L+ ++E +L +  +   D+
Sbjct: 434 QYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRALLESILTEAMYEIPDV 488

Query: 408 QEK-----TVVIDAEYV 419
           +        VV+D E V
Sbjct: 489 KTGKDRVDAVVVDEESV 505


>gi|189234285|ref|XP_969886.2| PREDICTED: similar to ATP-dependent clp protease atp-binding
           subunit clpx [Tribolium castaneum]
          Length = 604

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 89/254 (35%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 330 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 383

Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312
               ++T +ILF+ASGA++                             VS+ A L     
Sbjct: 384 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQ 443

Query: 313 ------------LPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                       L ++Q              GRFPV V   SLNK+    ILT+ ++ L+
Sbjct: 444 TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALL 503

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+  +   L FT  ++D++A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 504 PQYQRLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPG 558

Query: 407 LQEKTVVIDAEYVR 420
               TV +  EYVR
Sbjct: 559 SGITTVHVTEEYVR 572



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 260 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 319

Query: 110 A 110
           A
Sbjct: 320 A 320


>gi|270002375|gb|EEZ98822.1| hypothetical protein TcasGA2_TC004428 [Tribolium castaneum]
          Length = 590

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 89/254 (35%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 316 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 369

Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312
               ++T +ILF+ASGA++                             VS+ A L     
Sbjct: 370 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQ 429

Query: 313 ------------LPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                       L ++Q              GRFPV V   SLNK+    ILT+ ++ L+
Sbjct: 430 TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALL 489

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+  +   L FT  ++D++A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 490 PQYQRLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPG 544

Query: 407 LQEKTVVIDAEYVR 420
               TV +  EYVR
Sbjct: 545 SGITTVHVTEEYVR 558



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 246 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 305

Query: 110 A 110
           A
Sbjct: 306 A 306


>gi|126640550|ref|YP_001083534.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 17978]
          Length = 364

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 4/95 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGVGKTAISRRLAR 75
           +IGQ  AK+ +++A+ N ++R ++       +D E+   NILL+GPTG GKT +++ LAR
Sbjct: 1   MIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGSGKTLLAQTLAR 60

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   PF   + T  TE GYVG +VE I++ L+  A
Sbjct: 61  LLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 95



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 105 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 164

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           +T +ILFI  GAF                                       P DL    
Sbjct: 165 DTSNILFICGGAFAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 224

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A
Sbjct: 225 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVA 284

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
             A+  N+     GAR L++++E VL
Sbjct: 285 KRALERNT-----GARGLRSILENVL 305


>gi|171690260|ref|XP_001910055.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945078|emb|CAP71189.1| unnamed protein product [Podospora anserina S mat+]
          Length = 599

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 146/370 (39%), Gaps = 74/370 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+  A   V
Sbjct: 221 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVESCIERLLIEANYDV 280

Query: 115 RESRRDEVREQASINAEERILDAL--VGKTATSNTREVFRKKLRDG---EISDKEIDIEV 169
           + +    +           +LD    + +  T N R+V  + ++      +   ++ I V
Sbjct: 281 KAAEHGII-----------VLDEFDKIARKETVNGRDVGGEGVQQALLKLVEGTKVTITV 329

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            D     +    P G        S    +   SG+                       +D
Sbjct: 330 KDNRPSRTQNQPPTGYG------STTPPQAPPSGK-----------------------VD 360

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE----------GVQRDLLPLV 279
             T+   +I  V     V LD+   ++ R S   IG   E             +D+LPL 
Sbjct: 361 QYTIDTTNILFVFCGAFVGLDK--TVLRRVSKPSIGFGSEIRGGRSFSSTNSLKDILPL- 417

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDF 334
                   Y  +    I         ++ PADL     +PE+ GR      L  L+  + 
Sbjct: 418 ------ESYRHLPHQPIFEPNFTPLDLTTPADLQAFGFIPELIGRLHNICALSPLSLEEL 471

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  ++L+ QY  L +T    L FT  ++ A+A+ A        + GAR L+  ME
Sbjct: 472 YRILTEPRNSLVAQYTALFETYPSKLFFTRSALYAIAERAAK-----NETGARGLKMEME 526

Query: 395 RVLEDISFSA 404
           RVL +  + A
Sbjct: 527 RVLAEPMYDA 536


>gi|153803692|ref|ZP_01958278.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
          cholerae MZO-3]
 gi|124120769|gb|EAY39512.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
          cholerae MZO-3]
          Length = 53

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 39/48 (81%)

Query: 7  FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PK
Sbjct: 4  MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPK 51


>gi|317013160|gb|ADU83768.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Lithuania75]
          Length = 448

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 16/118 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 144 KSNILLLGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|297380556|gb|ADI35443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
           pylori v225d]
          Length = 448

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 16/128 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+++ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L
Sbjct: 83  APKDLKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  + 
Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202

Query: 112 NIVRESRR 119
             V+++++
Sbjct: 203 WNVQKAQK 210



 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430


>gi|222632348|gb|EEE64480.1| hypothetical protein OsJ_19330 [Oryza sativa Japonica Group]
          Length = 504

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%)

Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GIV++DE DK++ +   N     VS EGVQ  LL + EG+           S+S  Y  +
Sbjct: 186 GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 245

Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311
           NT +ILFI  G+F              H+    P                          
Sbjct: 246 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 305

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L+++    +L + ++ +  QYK+L K   + L FTE+
Sbjct: 306 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 365

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419
           ++  +A  A +  +     GAR L+++ME +L +  F   D +E       V++D E V
Sbjct: 366 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 419



 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 26/129 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKR------------AVAIALRNRWRRQQLPADLRD------ 49
           +P+EI   LD +++GQ  AK+             VA+ +  R  +      ++       
Sbjct: 48  TPKEIRRGLDEFVVGQDKAKKVNETSLLVGVVLCVAVHITPRGIQNSSNCSMKSSACGDV 107

Query: 50  --------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
                   EL   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE 
Sbjct: 108 SMSGDDDIELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES 167

Query: 102 IIRDLVDVA 110
           II +L+  A
Sbjct: 168 IICNLLAAA 176


>gi|325657413|gb|ADZ39188.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657415|gb|ADZ39189.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657417|gb|ADZ39190.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657421|gb|ADZ39192.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657423|gb|ADZ39193.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657425|gb|ADZ39194.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657429|gb|ADZ39196.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|108563744|ref|YP_628060.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori HPAG1]
 gi|107837517|gb|ABF85386.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1]
          Length = 307

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+             +  I
Sbjct: 70  GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 129

Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314
           +T  ILFI +GAF                                H+ +  DL     +P
Sbjct: 130 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 189

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L S++      IL   ++ LI QY++L K + + L F E++I  +A +A
Sbjct: 190 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 249

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +   +     GAR L+ ++E    DI F    L+   V I  + V
Sbjct: 250 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 289



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +   V
Sbjct: 5   NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 64

Query: 115 RESRR 119
           +++++
Sbjct: 65  QKAQK 69


>gi|115465091|ref|NP_001056145.1| Os05g0533900 [Oryza sativa Japonica Group]
 gi|48843829|gb|AAT47088.1| putative ATP-dependent Clp protease subunit clpX [Oryza sativa
           Japonica Group]
 gi|113579696|dbj|BAF18059.1| Os05g0533900 [Oryza sativa Japonica Group]
          Length = 406

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%)

Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GIV++DE DK++ +   N     VS EGVQ  LL + EG+           S+S  Y  +
Sbjct: 88  GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 147

Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311
           NT +ILFI  G+F              H+    P                          
Sbjct: 148 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 207

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L+++    +L + ++ +  QYK+L K   + L FTE+
Sbjct: 208 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 267

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419
           ++  +A  A +  +     GAR L+++ME +L +  F   D +E       V++D E V
Sbjct: 268 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 321



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE II +L+  
Sbjct: 18  ELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAA 77

Query: 110 A 110
           A
Sbjct: 78  A 78


>gi|325657419|gb|ADZ39191.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|170044440|ref|XP_001849855.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
           quinquefasciatus]
 gi|167867595|gb|EDS30978.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
           quinquefasciatus]
          Length = 614

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 104/248 (41%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 334 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 387

Query: 287 KYGSINTDHILFIASGAF-----------------------------------------H 305
           +   ++T +ILF+ASGA+                                          
Sbjct: 388 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 447

Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           V R A+L             +PE  GRFPV V   SL+      ILT+  + L+ QYK L
Sbjct: 448 VERDANLRKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVEMLVRILTEPRNALVPQYKAL 507

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L F ED++  +A +A+   +     GAR L+ +ME +L +  F       KTV
Sbjct: 508 LGMDQVELTFAEDALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVKTV 562

Query: 413 VIDAEYVR 420
            I  + VR
Sbjct: 563 HITDDCVR 570



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 269 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 324


>gi|147791350|emb|CAN75136.1| hypothetical protein VITISV_040753 [Vitis vinifera]
          Length = 600

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 312 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 371

Query: 292 NTDHILFIASGAF--------------------------HVSRPA--------------- 310
           +T  ILFI  GAF                              P                
Sbjct: 372 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTXAAVASSLLETVESS 431

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L +L ++    +LT+ ++ L  QYK++ +  G+ L FT++
Sbjct: 432 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 491

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  ++  A + N+     GAR L++ +E +L B  +   D++    +IDA
Sbjct: 492 ALRLISRKAXSKNT-----GARGLRSXLENILMBAMYEIPDVRTGNDIIDA 537



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 37/149 (24%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQL----------PA-DL 47
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R   Z L          PA D 
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHZSLQKCDPTWRIRPAEDT 218

Query: 48  RD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFI----------KVEV 86
            D           EL   NILL+GPTG G T     +       F            +  
Sbjct: 219 SDDKAEATDNDSVELEKSNILLMGPTGSGSTGSLSIIMLFLITWFTWYFHFFKDREDITC 278

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVA-INIV 114
                 GYVG +VE I+  L+ VA  N+V
Sbjct: 279 QNLGTAGYVGEDVESILYKLLMVADYNVV 307


>gi|218189491|gb|EEC71918.1| hypothetical protein OsI_04712 [Oryza sativa Indica Group]
          Length = 630

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 27/130 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAV---------AIALRNRWRR--------------QQLP 44
           +PRE+   LD ++IGQ  AK+ +         ++A+ N ++R                L 
Sbjct: 204 TPREMCRRLDEFVIGQGKAKKVLEGACHNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLD 263

Query: 45  ADLRD----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           A   D    E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE
Sbjct: 264 AASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVE 323

Query: 101 QIIRDLVDVA 110
            I++ L+  A
Sbjct: 324 SILQKLLVAA 333



 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + GS          I
Sbjct: 343 GIVYIDEVDKITKKAESVNVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 402

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+ P             
Sbjct: 403 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRTNMRSSEVTDPMVTSSLLESVESG 462

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ 
Sbjct: 463 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 522

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418
           ++  +A  A+  N+     GAR L+ ++E +L +  +   D  EKT       VV+D E 
Sbjct: 523 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 575

Query: 419 V 419
           +
Sbjct: 576 I 576


>gi|325657427|gb|ADZ39195.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF--------------HVSRPA-----------------------DLLP 314
           NT +ILFI  GAF               +   A                        L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|316967042|gb|EFV51535.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Trichinella spiralis]
          Length = 580

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 38/143 (26%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDE------------- 50
           P+EI + LD++++GQ+ AK+ +++A+ N ++R     + +P    D              
Sbjct: 164 PKEIYNYLDKFVVGQEQAKKVLSVAVYNHYKRVYLCPRPVPGSKNDNGDSSRPVTPMMTT 223

Query: 51  -------------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
                              L   NILL+GPTG GKT +++ +A+    PF   + T  T+
Sbjct: 224 KGKCLFVHGFGCVVYPELRLEKSNILLLGPTGCGKTLLAQTVAQCLDVPFAICDCTTLTQ 283

Query: 92  IGYVGRNVEQII-RDLVDVAINI 113
            GYVG +VE +I R L D   N+
Sbjct: 284 AGYVGEDVESVISRLLQDANYNV 306



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 7/107 (6%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V   SL+++    ILT+ +++LI QYK L   + I L FT+D+++A+A
Sbjct: 452 MIPEFVGRLPVLVQFHSLDQNLLVRILTEPQNSLIAQYKALFTMDQIDLHFTDDALNAIA 511

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA--SDLQEKTVVIDA 416
            +A+   +     GAR L+ ++E +L D  F    +D+   TV  DA
Sbjct: 512 RLALQKKT-----GARGLRAIVESILLDPMFECPGTDVSSVTVTADA 553



 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST-KYGS------ 290
           GIVFLDE DKI A       RD G       EGVQ+ LL ++EGS V+  ++GS      
Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQALLKMLEGSVVNVPQHGSRKMRGE 365

Query: 291 ---INTDHILFIASGAFH 305
              ++T ++LF+ASGAF+
Sbjct: 366 NIQVDTTNVLFVASGAFN 383


>gi|261884907|ref|ZP_06008946.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 217

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 53/197 (26%)

Query: 266 VSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------- 304
           VS EGVQ+ LL ++EGS V+             +  I+T +ILF+  GAF          
Sbjct: 8   VSGEGVQQALLKIIEGSPVNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEIIERR 67

Query: 305 ---------HVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLI 337
                     + R  D                  L+PE+ GR      L  +   D   I
Sbjct: 68  IGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIPELIGRLHAIATLNEITTDDMVKI 127

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L+ QY++L   +G  L F  D+I  +A  A+N  +     GAR L+++ME ++
Sbjct: 128 LTEPKNALLKQYQKLFAIDGAXLKFDNDAIKEVATQAINRXT-----GARGLRSIMEDIM 182

Query: 398 EDISFSASDLQEKTVVI 414
            DI F+  DL+   V+I
Sbjct: 183 MDIMFNLPDLKGYDVII 199


>gi|5353573|gb|AAD42187.1|AF134983_1 energy-dependent regulator of proteolysis [Mus musculus]
          Length = 632

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 87/251 (34%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 354 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 407

Query: 291 ---INTDHILFIASGAFH-----VSR-----------PADL------------------- 312
              ++T ++LF+ASGAF+     +SR           P++L                   
Sbjct: 408 TVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAADLANRSGESNT 467

Query: 313 ------------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                                   +PE  GR PV V L SL++     ILT+  + +I Q
Sbjct: 468 HQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQ 527

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F   +  
Sbjct: 528 YQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMFEVPNSD 582

Query: 409 EKTVVIDAEYV 419
              V +D E V
Sbjct: 583 IVCVEVDKEVV 593



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343

Query: 109 VAINI 113
              N+
Sbjct: 344 ANYNV 348



 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213


>gi|226532215|ref|NP_001140773.1| hypothetical protein LOC100272848 [Zea mays]
 gi|194701024|gb|ACF84596.1| unknown [Zea mays]
          Length = 346

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 65/244 (26%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KY 288
           TV   ++Q  +  G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + 
Sbjct: 50  TVADFNVQAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 108

Query: 289 GS----------INTDHILFIASGAF----------------HVSRPA------------ 310
           G+          I+T  ILFI  GAF                    P             
Sbjct: 109 GARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRVGGTSSA 168

Query: 311 ------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GRFP+ V L +LN+     +LT+ ++ L  Q+K+L
Sbjct: 169 QVTSSLLESVESGDLIAYGLIPEFIGRFPILVSLTALNEDQLVQVLTEPKNALGKQFKKL 228

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FT+ ++  +A+ A++ N+     GAR L+T++E +L D  +   D +    
Sbjct: 229 FSMNDVKLHFTDGALRIIAEKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEK 283

Query: 413 VIDA 416
            IDA
Sbjct: 284 RIDA 287



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 1   MGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVA 52


>gi|297517735|ref|ZP_06936121.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           OP50]
          Length = 334

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQVLLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313
           +T  ILFI  GAF      +S                                P DL+  
Sbjct: 149 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 208

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+
Sbjct: 209 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 268

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 269 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 309



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88


>gi|238005674|gb|ACR33872.1| unknown [Zea mays]
          Length = 362

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 64/231 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + G+          I
Sbjct: 73  GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 132

Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308
           +T +ILFI  GAF           H S                                 
Sbjct: 133 DTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESG 192

Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GRFP+ V L SL++     +LT+ ++ L  QY +L +   + L FTE+
Sbjct: 193 DLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEE 252

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           ++  +A  A++ N+     GAR L++++E +L +  +   + +     IDA
Sbjct: 253 ALRLIAKRAISKNT-----GARGLRSILESILTEAMYEIPETRTGKDKIDA 298



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+
Sbjct: 3   ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLL 60


>gi|158290292|ref|XP_563112.3| AGAP002996-PA [Anopheles gambiae str. PEST]
 gi|157017824|gb|EAL40794.3| AGAP002996-PA [Anopheles gambiae str. PEST]
          Length = 641

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 104/248 (41%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 360 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 413

Query: 287 KYGSINTDHILFIASGAF-----------------------------------------H 305
           +   ++T +ILF+ASGA+                                          
Sbjct: 414 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 473

Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           V R A+L             +PE  GRFPV V   SL+      ILT+  + L+ QYK L
Sbjct: 474 VERDANLKKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKAL 533

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FT++++  +A +A+   +     GAR L+ +ME +L +  F       K V
Sbjct: 534 LGMDQVELSFTDEALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVKGV 588

Query: 413 VIDAEYVR 420
            I  E VR
Sbjct: 589 RITEESVR 596



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 295 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 350


>gi|222619642|gb|EEE55774.1| hypothetical protein OsJ_04339 [Oryza sativa Japonica Group]
          Length = 572

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291
           GIV++DE DKI  +     +   VS EGVQ+ LL ++EG+ VS  + GS          I
Sbjct: 136 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 195

Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310
           +T  ILFI  GAF                              V+ P             
Sbjct: 196 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRINMRSSEVTDPMVTSSLLESVESG 255

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ 
Sbjct: 256 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 315

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418
           ++  +A  A+  N+     GAR L+ ++E +L +  +   D  EKT       VV+D E 
Sbjct: 316 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 368

Query: 419 V 419
           +
Sbjct: 369 I 369



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 27/122 (22%)

Query: 16  LDRYIIGQQDAKRAV---------AIALRNRWRR--------------QQLPADLRD--- 49
           LD ++IGQ  AK+ +         ++A+ N ++R                L A   D   
Sbjct: 5   LDEFVIGQGKAKKVLEGACQNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNN 64

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE I++ L+ 
Sbjct: 65  IEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLV 124

Query: 109 VA 110
            A
Sbjct: 125 AA 126


>gi|213022612|ref|ZP_03337059.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 266

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 22  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 81

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 82  DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 141

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 142 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 201

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 202 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 242


>gi|213610197|ref|ZP_03370023.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 275

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 31  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 90

Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313
           +T  ILFI  GAF                                        P DL+  
Sbjct: 91  DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 150

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 151 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 210

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 211 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 251


>gi|229025936|ref|ZP_04182328.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1272]
 gi|228735382|gb|EEL85985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1272]
          Length = 295

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I
Sbjct: 52  GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 111

Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313
           +T +ILFI  GAF                              HV     P DLL     
Sbjct: 112 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 171

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++  +A  
Sbjct: 172 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 231

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402
           A+   +     GAR L++++E ++ D+ F
Sbjct: 232 AIERKT-----GARGLRSIIEGLMLDVMF 255



 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 1   MAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 42


>gi|147770637|emb|CAN64542.1| hypothetical protein VITISV_013764 [Vitis vinifera]
          Length = 730

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 43/146 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKR----------------------------AVAIALRNRWR 39
           +P+EI   LD+++IGQ+ AK+                             +++A+ N ++
Sbjct: 269 TPKEICKGLDKFVIGQERAKKFSGIEVYIVEIGKWGHSFKRSNWCQTWEVLSVAVYNHYK 328

Query: 40  R------------QQLPADLRD---ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           R            +   +++ D   EL   N+LL+GPTG GKT +++ LAR    PF+  
Sbjct: 329 RIYHGSLQKGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIA 388

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + T  T+ GYVG +VE I+  L+ VA
Sbjct: 389 DATTLTQAGYVGEDVESILYKLLTVA 414



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 108/273 (39%), Gaps = 86/273 (31%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284
           L  + TV   ++Q  +  G+V++DE DKI  +     +   VS EGVQ+ LL ++EG+ +
Sbjct: 407 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTDL 465

Query: 285 S-TKYG--------------------------SINTDHILFIASGAF------------- 304
             + Y                            I+T  ILFI  GAF             
Sbjct: 466 KWSGYKILRGIKQXIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQD 525

Query: 305 ---HVSRPA------------------------------DLLPEIQGRFPVRVHLKSLNK 331
                  P                                L+PE  GRFP+ V L +L +
Sbjct: 526 SSIGFGAPVRANMRTGGLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTE 585

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
                +LT+ ++ L  QYK+L     + L FTE ++  +A  A+     V + GAR L+ 
Sbjct: 586 DQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRA 640

Query: 392 VMERVLEDISFSASDLQEK-----TVVIDAEYV 419
           ++E +L +  +   D++        VV+D E V
Sbjct: 641 LLESILTEAMYEIPDVKTGKDRVDAVVVDEESV 673


>gi|238483617|ref|XP_002373047.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357]
 gi|220701097|gb|EED57435.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357]
          Length = 553

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 178/446 (39%), Gaps = 90/446 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE----LMPKNILLVGPT 62
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q+L    RDE    L+ K        
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQEL--QRRDEEAVELLAKR------- 136

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
              + ++ R    +   PF   + T FT+ GY+G + E  +  L+  A   V ++ R   
Sbjct: 137 -ARRESVDRHPVEV---PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGII 192

Query: 120 --DEVREQASINAE-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             DEV + A+           E +  AL+ K     T +V  K+ ++   +    +    
Sbjct: 193 VLDEVDKIAAAKVSHGKDVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TY 249

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            ++S + N   P     G+    E+++      R   I       +  L +      + M
Sbjct: 250 PSNSPLGNSPYPPSNGGGMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVM 298

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVST 286
           D + R SI             F + V   S +     R G         +P+V GS    
Sbjct: 299 DRISRGSIG------------FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEA 343

Query: 287 KYGSINTDHILFIASG-------------AFHVSRPADL-----LPEIQGRFPVRVHLKS 328
            Y      H+ F  S              A  +  P DL     +PE+ GR PV   L +
Sbjct: 344 LY----KKHLPFFTSASPESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALST 399

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L +     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +     GAR 
Sbjct: 400 LTQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARA 454

Query: 389 LQTVMERVLEDISFSASDLQEKTVVI 414
           L+T ME +L D  +       K V++
Sbjct: 455 LRTEMETILSDAMYETPGSSVKFVLV 480


>gi|260813876|ref|XP_002601642.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
 gi|229286941|gb|EEN57654.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
          Length = 664

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 95/267 (35%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVST----------KYGS 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+           +   
Sbjct: 363 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPERNTRKLRGESVP 419

Query: 291 INTDHILFIASGAFH-----VSR-----------PADLLP-------------------- 314
           ++T +ILF+ASGAF+     +SR           PA++ P                    
Sbjct: 420 VDTTNILFVASGAFNGLDRIISRRRHEKYLGFGAPANISPGRRAATASDVQSMTEGTNAQ 479

Query: 315 -------------------------EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                    E  GR PV V L+SL+++    ILT   + LI QY
Sbjct: 480 ADNEEKDAMLAHVQARDLIEFGMIPEFVGRLPVVVALQSLSQAMLVRILTQPRNALIPQY 539

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDL 407
           + L + + + L+ ++D+++A+A +A+   +     GAR L+ +ME +L D  F    SD+
Sbjct: 540 QALFQMDKVQLEVSDDALEAIAQLALERKT-----GARGLRAIMETLLLDPMFEVPGSDI 594

Query: 408 ----QEKTVVI---DAEYVRL---HIG 424
                EK V++    A+Y  L   H G
Sbjct: 595 VGVRLEKEVILGQKPAQYFSLLDFHTG 621



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           NILL+GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 298 NILLLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADANYNV 357


>gi|170088152|ref|XP_001875299.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650499|gb|EDR14740.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 491

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 43/146 (29%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPAD---- 46
           +PRE+V  L+++I+GQ++AK+ +++A+ N + R                 + +P D    
Sbjct: 51  TPRELVEYLNQFIVGQENAKKVLSVAVYNHYNRVRANLAFEADEIETNNTRDVPPDSRSG 110

Query: 47  --------LRDELMP--------------KNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
                   LR +  P               N+L++GPTG GKT +++ LA++   PF   
Sbjct: 111 VASARIRPLRKQASPLSLSARRMVPLFEKSNVLVIGPTGSGKTLLAKTLAKVLDVPFSVS 170

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + T FT+ GYVG + +  I+ L+  A
Sbjct: 171 DATSFTQAGYVGEDADMAIQRLLQAA 196



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 87/218 (39%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK-----YG------ 289
           GI+++DE DKI AR S  G   SR    EGVQ+ LL ++EGS V+ +     Y       
Sbjct: 206 GIIYIDEIDKI-ARKSSTGTEGSRDVGGEGVQQALLRMMEGSVVTVQAKGAVYAEAAPSG 264

Query: 290 ---------------------SINTDHILFIASGAF--------------HVSRPADL-- 312
                                 I+T ++LFI SGAF               +   A+L  
Sbjct: 265 GEGHSRSGQRPSQATPKPDTYQIDTSNVLFILSGAFVGLDKVIKQRVAKGSIGFTANLTS 324

Query: 313 ------LP----------------------------EIQGRFPVRVHLKSLNKSDFRLIL 338
                 LP                            E   R P    L  L  SD + IL
Sbjct: 325 TDGDGPLPFFTPNRKTQHNILDLVETSDLVKYGFIPEFISRLPSITALSPLTVSDLKRIL 384

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
           T+ + +L+ QY+ L    G+ + FT  ++D +   A +
Sbjct: 385 TEVKGSLMSQYQSLFGYSGVEIRFTSAALDEICQKAFD 422


>gi|242088601|ref|XP_002440133.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
 gi|241945418|gb|EES18563.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
          Length = 546

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 68/239 (28%)

Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTK-----------YGS 290
           +GIV++DE DK+  +     +   VS EGVQ+ LL + EG+ +S             Y  
Sbjct: 228 HGIVYIDEVDKLTKKADCREDRRDVSGEGVQQALLKIFEGTVISVPRKRSQDNMPQGYVE 287

Query: 291 INTDHILFIASGAF----------------------HVSRPAD----------------- 311
           +NT +ILFI  GAF                      H  R                    
Sbjct: 288 VNTRNILFICGGAFFGLEKIVAERHQHPVGFGIPICHELRNCSWTTALQESCSIDTVEND 347

Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L +L++     +L + ++ +  QYK+L K   + L FT++
Sbjct: 348 DLIAYGLIPEFIGRLPITVGLNNLSEEQLVQVLREPKNAIGKQYKKLFKMNDVKLYFTDN 407

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419
           ++  +A  A        + GAR L+++ME +L +  F   D +E       V++D E V
Sbjct: 408 ALRMIAKKA-----AAKETGARGLRSIMEDILTEAMFEIPDAREGKEKVIAVLVDEESV 461



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GY G +VE +I  L+  
Sbjct: 159 ELEKSNILLIGPTGTGKTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVA 218

Query: 110 A 110
           A
Sbjct: 219 A 219


>gi|322694066|gb|EFY85906.1| putative MCX1 protein [Metarhizium acridum CQMa 102]
          Length = 575

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 99/260 (38%), Gaps = 104/260 (40%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS----------------SVSTK 287
           YGIV LDEFDK+  R+S  G  V  EGVQ+ LL LVEG+                 ++T 
Sbjct: 261 YGIVVLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINVKDNRSSRSTPPITTN 320

Query: 288 YG---------------------SINTDHILFIASGAF---------HVSRPA------- 310
           Y                      +I+T +ILF+  GAF          V+RP+       
Sbjct: 321 YSSGGSSSSAPQAVPPGGKVDQYTIDTSNILFVFCGAFVGLDKAVLQRVARPSMGFGGEL 380

Query: 311 ------------------------DLLPEIQ----------------------GRFPVRV 324
                                   D +PE                        GR     
Sbjct: 381 RGRSTLSGSKHILPPSVYAHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNIC 440

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L  L+ SD   +LT+  ++L+ QY  L +T    L FTE ++ A+A+ A  + +     
Sbjct: 441 ALSPLSTSDLLRVLTEPRNSLVAQYTALFETYPSRLHFTEKALYAIAERAAAIGT----- 495

Query: 385 GARRLQTVMERVLEDISFSA 404
           GAR L+  MERVL +  F A
Sbjct: 496 GARGLKMEMERVLAEPMFDA 515



 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +    T+ GY+G++VE  I  L+
Sbjct: 197 NLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLL 249


>gi|145608352|ref|XP_360644.2| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15]
 gi|145015830|gb|EDK00320.1| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15]
          Length = 574

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 187/514 (36%), Gaps = 159/514 (30%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F PR++   LD +++GQ+ AK+     + N ++ Q+   ++ DE   +   L+      
Sbjct: 72  QFYPRDLKRRLDEFVVGQERAKKTTTSVVFNHYQGQRRRQNIEDERRVEEERLLRQQHFQ 131

Query: 66  KTAISRRLARLAGAPFIKVEVTKFT-----EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +       A   G P  K+E          E  + G +  +  + L +   + V E  RD
Sbjct: 132 RARREPHPAEGQGHPESKLERKPNADNLGFEDDFPGHH--ESAQGLHEQDPSFVEEFLRD 189

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           + R+   +  ++  L   +G T    T  V                + V  T SD ++F 
Sbjct: 190 DARDSRHVTIQKSNL-LCIGPTGVGKTYIVEH--------------LNVPFTISDCNSFT 234

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G                        I   V+ C   L       LI+ D      +  
Sbjct: 235 QAG-----------------------YIGQDVEACIERL-------LIEADY----DVNA 260

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------------- 284
            EN GIV LDEFDK+  R+S NG  V  EGVQ+ LL LVEGS V                
Sbjct: 261 AEN-GIVVLDEFDKLARRESVNGRDVGGEGVQQALLKLVEGSKVTVNVKDTRSSRSPSPI 319

Query: 285 STKYG-------------------SINTDHILFIASGAF--------------------- 304
           ++ Y                    +I+T +ILFI  GAF                     
Sbjct: 320 TSNYNGGSQTSQSSPPPGPRVEQITIDTTNILFIFCGAFVGLDKIVLRRVAKPTIGFGSE 379

Query: 305 --------------------HVSRP-------------ADL-----LPEIQGRFPVRVHL 326
                               H+ +P             ADL     +PE+ GR      L
Sbjct: 380 PIRNGDALPREMYAHLPHQPHMVKPGTSGFTPLDLTTPADLQAFGFIPELIGRIHNICAL 439

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+  +   ILT+  ++L+ QYK L +T    L FT  ++ A+A+ A        + GA
Sbjct: 440 TPLSLDELLRILTEPRNSLVAQYKALFETYPSRLFFTSRALYAIAERAAK-----NETGA 494

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           R L+  MERVL +  F   D     VVID   V+
Sbjct: 495 RGLKMEMERVLAEPMF---DAPMPYVVIDEACVK 525


>gi|157138274|ref|XP_001664208.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti]
 gi|108869543|gb|EAT33768.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti]
          Length = 633

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 103/248 (41%), Gaps = 83/248 (33%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 353 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 406

Query: 291 ----INTDHILFIASGAF-----------------------------------------H 305
               ++T +ILF+ASGA+                                          
Sbjct: 407 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASAAPMDNDQ 466

Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           V R A+L             +PE  GRFPV V   SL+      ILT+  + L+ QYK L
Sbjct: 467 VERDANLRKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKAL 526

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L F E ++  +A +A+   +     GAR L+ +ME +L +  F       +TV
Sbjct: 527 LGMDQVELTFAEGALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVQTV 581

Query: 413 VIDAEYVR 420
            I  + VR
Sbjct: 582 HITEDCVR 589



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 288 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343


>gi|328352816|emb|CCA39214.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pichia
           pastoris CBS 7435]
          Length = 565

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 31/131 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+++   LDR+I+GQ+  K+ +++A+   + R    A  R++                 
Sbjct: 104 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 163

Query: 51  --------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                         L   N+LL+GP+G GKT I++ LA+    PFI  + T  T+ GYVG
Sbjct: 164 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 223

Query: 97  RNVEQIIRDLV 107
            ++E  I  L+
Sbjct: 224 EDIESCIEKLL 234



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L   D   +LT+  ++++ QY     T  + L  T  +I  +A
Sbjct: 379 LIPELIGRLPIVSSLSPLTVDDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIA 438

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           ++++  N T    GAR L+ ++E++L +  +         V++D + +   I D   ET 
Sbjct: 439 EISIK-NGT----GARGLRAILEKLLLNAKYDCPGSSISFVLVDTDVISKSI-DENKETG 492

Query: 432 MYHF 435
            + F
Sbjct: 493 EFVF 496


>gi|254572115|ref|XP_002493167.1| Mitochondrial ATP-binding protein, possibly a mitochondrial
           chaperone with non-proteolytic function [Pichia pastoris
           GS115]
 gi|238032965|emb|CAY70988.1| Mitochondrial ATP-binding protein, possibly a mitochondrial
           chaperone with non-proteolytic function [Pichia pastoris
           GS115]
          Length = 600

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 31/131 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+++   LDR+I+GQ+  K+ +++A+   + R    A  R++                 
Sbjct: 122 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 181

Query: 51  --------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                         L   N+LL+GP+G GKT I++ LA+    PFI  + T  T+ GYVG
Sbjct: 182 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 241

Query: 97  RNVEQIIRDLV 107
            ++E  I  L+
Sbjct: 242 EDIESCIEKLL 252



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L  L   D   +LT+  ++++ QY     T  + L  T  +I  +A
Sbjct: 414 LIPELIGRLPIVSSLSPLTVDDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIA 473

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           ++++  N T    GAR L+ ++E++L +  +         V++D + +   I D   ET 
Sbjct: 474 EISIK-NGT----GARGLRAILEKLLLNAKYDCPGSSISFVLVDTDVISKSI-DENKETG 527

Query: 432 MYHF 435
            + F
Sbjct: 528 EFVF 531



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINT-DHILFIASG 302
           GI+ LDE DK+       G   ++ EGVQ+ LL LVEG++V+ +    N  DH  F  +G
Sbjct: 265 GIIVLDEIDKLAKPSVYTGTKDIAGEGVQQGLLKLVEGTTVTVQCKRSNAPDHNQFGLNG 324


>gi|282852260|ref|ZP_06261607.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556594|gb|EFB62209.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 90

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%)

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           + D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL T++E++L
Sbjct: 1   MKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRLATILEKLL 60

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ED+ +   D+    + I  +YV   + D 
Sbjct: 61  EDVLYEGPDMNMGEITITQKYVDQKLSDI 89


>gi|148990170|ref|ZP_01821401.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924437|gb|EDK75526.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 289

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          +
Sbjct: 58  GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 117

Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314
           +T +ILFI  GAF                     ++  D                  ++P
Sbjct: 118 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 177

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ A
Sbjct: 178 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 237

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402
           +   +     GAR L++++E  + D+ F
Sbjct: 238 IERKT-----GARGLRSIIEETMLDVMF 260



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
           G GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  NI R  R
Sbjct: 1   GSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 57


>gi|319789499|ref|YP_004151132.1| ATPase associated with various cellular activities AAA_5
           [Thermovibrio ammonificans HB-1]
 gi|317114001|gb|ADU96491.1| ATPase associated with various cellular activities AAA_5
           [Thermovibrio ammonificans HB-1]
          Length = 560

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK----YGSINTDHILFI 299
           +GIVF+DE DKI+ ++S N        +Q  LL +VEG+ V+ +      +++T H+ FI
Sbjct: 231 FGIVFIDEIDKILIQESENSFYT---WLQNFLLTMVEGTVVTGETEREVKTMDTSHLTFI 287

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG-I 358
            +GAF  + P D  PE +GR  V V    L        L + E   I + K+     G +
Sbjct: 288 FAGAFSQTSPDDFFPEFRGRLNVTVKFNELG-------LEELEQ--IARLKDFAGFMGDL 338

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAE 417
            +    D+  A+A+ A  LN     +GARR+  V+ +V   +S   A       VV+D  
Sbjct: 339 FVKVEPDAYKAVAEEAFRLNRDCY-LGARRVDEVISKVNAALSRELALGRLSLPVVVDYS 397

Query: 418 YVR 420
           YV+
Sbjct: 398 YVK 400



 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I +E+ + ++GQ +  + V  A+        L  + R +    NILLVGPTG GKT ++R
Sbjct: 13  ISAEISKELVGQDEGVKKVVTAICENLE-SYLSGNSR-KTAKNNILLVGPTGSGKTELAR 70

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           R++ L   PF++V +T +T  GY GR+ + I+
Sbjct: 71  RISELLDLPFVRVNITDYTLTGYKGRDPQSIV 102


>gi|328707305|ref|XP_003243358.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like isoform 2 [Acyrthosiphon
           pisum]
 gi|328707307|ref|XP_001949996.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like isoform 1 [Acyrthosiphon
           pisum]
          Length = 556

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 50/152 (32%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADL---RDE 50
           P+EI   L++Y+IGQ+ AK+ +A+A+ N  +R               Q+L  +L   R+ 
Sbjct: 124 PKEIFVNLNKYVIGQELAKKVLAVAVYNHCKRIIHNITTPKKNDVIDQRLLDNLQNSREN 183

Query: 51  L-------MPK-------------------------NILLVGPTGVGKTAISRRLARLAG 78
           L       MP+                         NI+L+GPTG GKT +++ +A+   
Sbjct: 184 LSNNHIFGMPQMDSTKNNQDEIKITSIFEDTLLEKSNIILLGPTGCGKTLLAQTIAKQLD 243

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 244 VPFAICDCTNLTQAGYVGEDIESVIGKLLQAA 275



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   SLN++    ILT+ +++ + Q+K L   + + L FT++++ A+A
Sbjct: 426 MIPEFVGRFPVLVPFHSLNRNLLVRILTEPKNSTVKQFKLLFGLDKVELTFTDEALRAIA 485

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
             A+   +     GAR L+ ++E +L D  F    SD+    V  DA
Sbjct: 486 SQALEKKT-----GARGLRAIVESILLDPMFEIPGSDVVSVHVTEDA 527


>gi|52855560|gb|AAU88654.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 222

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 13/96 (13%)

Query: 31  AIALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           A+A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF  
Sbjct: 1   AVAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM 54

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  ADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 90



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 91  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 150

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 151 DTSKILFICGGAF 163


>gi|328771874|gb|EGF81913.1| hypothetical protein BATDEDRAFT_34654 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 746

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 69/252 (27%)

Query: 245 GIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------- 289
           GIVF+DE DKI  R    + N   VS EGVQ+ LL ++EG+  +++ K G          
Sbjct: 445 GIVFIDEIDKISRRSDASNPNQRDVSGEGVQQGLLRMLEGTVVNITVKAGATGAKRSATQ 504

Query: 290 -----SINTDHILFIASGAF--------------------------------------HV 306
                S++T +ILFI SGAF                                      H 
Sbjct: 505 GSEVFSVDTSNILFICSGAFVGLDKIVQSRTGVKGSIGFDAPLTQTHCSETTNKLNPFHS 564

Query: 307 SRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL+     PE  GR P+      L+  +   IL + ++ ++ QY+E+ +   + L 
Sbjct: 565 VEPDDLIKFGFIPEFIGRLPIIASSDPLSVEELERILVEPKNAIVKQYQEIFRRSNLELL 624

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
               ++  +A +A   NS     GAR L+ ++E  L+D  +     + K +V+D + V  
Sbjct: 625 VHPLALRKIATLATAKNS-----GARGLRRIIESALQDALYEYPGSEYKYIVLDEDAVVT 679

Query: 422 -HIGDFPSETDM 432
             +G F  E  M
Sbjct: 680 GKVGHFKQEKYM 691



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 54/146 (36%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRR-----------------------------QQLPAD 46
           LD++++GQ+  K+A+++A+ N ++R                             Q +  +
Sbjct: 287 LDQHVVGQERLKKALSVAIYNHYKRVDHNCGTSATEIDPREGMTEYLFDFAKLSQWVYPN 346

Query: 47  LRDELMPK-------------------------NILLVGPTGVGKTAISRRLARLAGAPF 81
              ELM +                         NILL+GPTG GKT I++ +A++   PF
Sbjct: 347 YCFELMSRFTGDTVKKRGRPSAVDVEPLTIDKSNILLLGPTGSGKTLIAKTVAKILNVPF 406

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLV 107
              + T FT+ GYVG +VE  I  L+
Sbjct: 407 SMNDATPFTQAGYVGDDVEVCIHRLL 432


>gi|227547149|ref|ZP_03977198.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212366|gb|EEI80262.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 67

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPL
Sbjct: 8   LIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPL 67


>gi|88809299|ref|ZP_01124807.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7805]
 gi|88786518|gb|EAR17677.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7805]
          Length = 344

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 62/215 (28%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +V  + G          I
Sbjct: 96  GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 155

Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311
           +T  ILFI  GAF          + R      PAD                         
Sbjct: 156 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPADGRGRGKATRDLQAAQVLRHLEPDDL 215

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L+F   +I
Sbjct: 216 VRYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLEFEPRAI 275

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           +A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 276 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY 305



 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 32  IALRNRWRRQQLPADLRDE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R     D + E       L   NILL+GPTG GKT +++ LA +   PF   
Sbjct: 1   VAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGPTGCGKTLLAQTLAEMLDVPFAVA 60

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + T  TE GYVG +VE I+  L+  A
Sbjct: 61  DATTLTEAGYVGEDVENILLRLLQKA 86


>gi|221131979|ref|XP_002167314.1| PREDICTED: similar to ClpX caseinolytic protease X homolog [Hydra
           magnipapillata]
          Length = 683

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 71/241 (29%)

Query: 245 GIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGS----------INT 293
           GI+FLDE DKI      + +  V  EGVQ+ LL ++EG+ V+    +          ++T
Sbjct: 414 GIIFLDEVDKISCVSGFHQVRDVGGEGVQQGLLKMLEGTVVNVPERTSRKMRGENVPVDT 473

Query: 294 DHILFIASGAFH---------------------------------VSR--PAD------L 312
            +I+F+ASGAF+                                 +S+  P++      L
Sbjct: 474 TNIMFVASGAFNGLEDIVRRRQQDKSLGFGSSTKKKSNEIMDLQTISKLEPSERSDRDAL 533

Query: 313 LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           L +++ R               P+ V + SL+ +    ILT+ ++ LI QY+ L K + +
Sbjct: 534 LAQVEARDLIGYGMIPEFVGRLPILVSINSLDVNALVTILTEPKNALIPQYQHLFKMDKV 593

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D++  +A +A    +     GAR L++++E++L D  F A   +   V ID + 
Sbjct: 594 DLHFTKDALRKIALLAQERKT-----GARGLKSILEKILLDPMFDAPGSEISAVYIDEDT 648

Query: 419 V 419
           V
Sbjct: 649 V 649



 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 349 NILLLGPTGSGKTLLAQTIAKCLDVPFAMCDCTSLTQAGYVGEDIESVITKLLQEA 404


>gi|322707680|gb|EFY99258.1| putative MCX1 protein [Metarhizium anisopliae ARSEF 23]
          Length = 523

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 99/260 (38%), Gaps = 104/260 (40%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS----------------SVSTK 287
           YGIV LDEFDK+  R+S  G  V  EGVQ+ LL LVEG+                 ++T 
Sbjct: 209 YGIVVLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINVKDNRSSRSTPPITTN 268

Query: 288 YG---------------------SINTDHILFIASGAF---------HVSRPA------- 310
           Y                      +I+T +ILF+  GAF          V++P+       
Sbjct: 269 YSSGGSSSSAPQAVPPGGKVDQYTIDTSNILFVFCGAFVGLDKAVLQRVAKPSMGFGGEL 328

Query: 311 ------------------------DLLPEIQ----------------------GRFPVRV 324
                                   D +PE                        GR     
Sbjct: 329 RGRSTLSGSKHILPLSVYAHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNIC 388

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L  L+ SD   +LT+  ++L+ QY  L +T    L FTE ++ A+A+ A  + +     
Sbjct: 389 ALSPLSTSDLLRVLTEPRNSLVAQYTALFETYPSRLRFTEKALYAIAERAAAIGT----- 443

Query: 385 GARRLQTVMERVLEDISFSA 404
           GAR L+  MER+L +  F A
Sbjct: 444 GARGLKMEMERILAEPMFDA 463



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +    T+ GY+G++VE  I  L+
Sbjct: 145 NLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLL 197


>gi|52855662|gb|AAU88705.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 208

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855514|gb|AAU88631.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 219

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|331241319|ref|XP_003333308.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309312298|gb|EFP88889.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 584

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 289 GSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           GS NT H       A     PADL     +PE  GR PV   LK+L ++D   +LT+ ++
Sbjct: 398 GSGNTAHGRL--PDALEQVEPADLNAFGLIPEFIGRIPVLASLKALTENDLLRVLTEPKN 455

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY++L K  G+ + FT  +  A+A +A N   T    GAR L+ +ME++L D  ++
Sbjct: 456 CLLKQYEQLFKINGVAIKFTLPAQRAIARLA-NEKKT----GARGLRQIMEKILLDSMYT 510

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSE 429
           A     + ++ID   V   +G  P++
Sbjct: 511 APQSSIRYILIDESVV---LGQTPAK 533



 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
          SPR+I  ELD Y+I Q DAK+ +++A+ N + R
Sbjct: 38 SPRDIHRELDNYVIAQSDAKKILSVAVFNHYIR 70


>gi|52855484|gb|AAU88616.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 213

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855482|gb|AAU88615.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855564|gb|AAU88656.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 214

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855496|gb|AAU88622.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 217

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|116204749|ref|XP_001228185.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51]
 gi|88176386|gb|EAQ83854.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51]
          Length = 579

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 103/260 (39%), Gaps = 104/260 (40%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS----------------TK 287
           +GI+ LDEFDKI  R++ NG  V  EGVQ+ LL LVEG+ V+                + 
Sbjct: 259 HGIIVLDEFDKIAKRETVNGRDVGGEGVQQALLKLVEGTKVTINIKDQRQSRTTNNPPSG 318

Query: 288 YG----------------SINTDHILFIASGAF---------HVSRPA------------ 310
           YG                +I+T +ILF+  GAF          V++P+            
Sbjct: 319 YGPSNPQSTPPAGKVDQYTIDTTNILFVFCGAFVGLDKTVLRRVAKPSIGFGSEVRGRSA 378

Query: 311 ------DLL-PEIQGRFPV-----------------------------------RVH--- 325
                 D+L PE+    P                                    R+H   
Sbjct: 379 SMSGSKDILPPEMYSHLPHQPAFAGGSSGTGFTPLDLTTPADLQAYGFIPELIGRLHNIC 438

Query: 326 -LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L  L+  +   ILT+  ++L+ QY  L +T    L+FT  ++ A+A+ A        + 
Sbjct: 439 ALTPLSLDELYRILTEPRNSLVAQYTALFETYPSKLNFTRKALTAIAERAAK-----NET 493

Query: 385 GARRLQTVMERVLEDISFSA 404
           GAR L+  MERVL D  + A
Sbjct: 494 GARGLKMEMERVLADPMYDA 513



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 195 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVESCIERLL 247


>gi|52855620|gb|AAU88684.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 197

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 8   ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 67

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 68  CDYDVQKAQR 77



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 78  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 137

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 138 DTSKILFICGGAF 150


>gi|52855520|gb|AAU88634.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855522|gb|AAU88635.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855568|gb|AAU88658.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855604|gb|AAU88676.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 219

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855486|gb|AAU88617.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855510|gb|AAU88629.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855524|gb|AAU88636.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855530|gb|AAU88639.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 220

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855136|gb|AAU88442.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855138|gb|AAU88443.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855542|gb|AAU88645.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855570|gb|AAU88659.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 221

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 32  IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   
Sbjct: 1   VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 90  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 150 DTSKILFICGGAF 162


>gi|52855688|gb|AAU88718.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 203

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855628|gb|AAU88688.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 202

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 13  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 73  CDYDVQKAQR 82



 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 83  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 143 DTSKILFICGGAF 155


>gi|52855626|gb|AAU88687.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 203

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|320166605|gb|EFW43504.1| ATP-dependent protease ATP-binding subunit [Capsaspora owczarzaki
           ATCC 30864]
          Length = 716

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 51/168 (30%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSV----------STKYGSINT 293
           GI+FLDE DKI     G  +  V  EGVQ+  L ++EG+ V          +  +  ++T
Sbjct: 489 GIIFLDEVDKIARSYEGARVKDVGGEGVQQGFLKILEGAVVNVPDKGARKTAQNFIQLDT 548

Query: 294 DHILFIASGAFH---------VS------------------------RPADL-----LPE 315
            +ILFIASGAF          VS                        +P DL     +PE
Sbjct: 549 SNILFIASGAFSGLEKLVANRVSQSSLGFNASVKAQNASDMEFLGQVQPTDLQKFGMIPE 608

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL--MKTEGIILD 361
             GRFP+ VHL +L++ D   IL + ++ LI QY+ L  M+ + I++D
Sbjct: 609 FIGRFPLLVHLDALSEKDLTRILVEPKNALIPQYQALFAMEKDKILVD 656


>gi|52855622|gb|AAU88685.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 202

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|196001235|ref|XP_002110485.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
 gi|190586436|gb|EDV26489.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
          Length = 563

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFPV  H++SL++     ILT+ E+ L+ QYK L + + + L  T+ +  A+A
Sbjct: 415 LIPEFVGRFPVLCHIESLDEEALMRILTEPENALLRQYKALFEMDKVQLAITDGACLAIA 474

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++MER+L D  F    SD+ E  ++ID + V
Sbjct: 475 KMALQKKT-----GARGLRSIMERLLLDSMFEVPGSDIVE--IIIDEDVV 517



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 59/164 (35%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40
           PR+I   L RYI+GQ+ AKR +++A+ N ++R                            
Sbjct: 110 PRKIYDYLCRYIVGQERAKRILSVAVYNHYKRLYFNNLPVLSKPAFDKQNWKQKTDGTKD 169

Query: 41  -------------------QQLP---ADLRD------ELMPKNILLVGPTGVGKTAISRR 72
                              Q+ P    DL D      +L   NI+L GPTG  KT +++ 
Sbjct: 170 QGNLMQIRGRNATQTNQLQQETPINGTDLLDNNISALKLEKSNIVLFGPTG--KTLLAQT 227

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115
           LAR    PF   + T  T+ GYVG ++E +I  L+ D   N+ R
Sbjct: 228 LARCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQDANYNVSR 271


>gi|52855606|gb|AAU88677.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855614|gb|AAU88681.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855616|gb|AAU88682.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 198

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 9   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 68

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 69  CDYDVQKAQR 78



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 79  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 138

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 139 DTSKILFICGGAF 151


>gi|294855151|gb|ADF44513.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B827]
 gi|294855153|gb|ADF44514.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1492]
 gi|294855155|gb|ADF44515.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E807]
 gi|294855157|gb|ADF44516.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. H442]
 gi|294855159|gb|ADF44517.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. M863]
 gi|294855161|gb|ADF44518.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW10509]
 gi|294855163|gb|ADF44519.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW11930]
 gi|294855165|gb|ADF44520.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW11966]
 gi|294855167|gb|ADF44521.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B1147]
 gi|294855169|gb|ADF44522.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09231]
 gi|294855171|gb|ADF44523.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09276]
 gi|294855173|gb|ADF44524.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09254]
 gi|294855175|gb|ADF44525.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09266]
 gi|294855177|gb|ADF44526.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TA04]
 gi|294855179|gb|ADF44527.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B685]
 gi|294855181|gb|ADF44528.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14182]
 gi|294855183|gb|ADF44529.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii TW11588]
 gi|294855185|gb|ADF44530.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. H605]
 gi|294855187|gb|ADF44531.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B49]
 gi|294855189|gb|ADF44532.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09308]
 gi|294855191|gb|ADF44533.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B1225]
 gi|294855193|gb|ADF44534.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B646]
 gi|294855195|gb|ADF44535.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1118]
 gi|294855197|gb|ADF44536.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1195]
 gi|294855199|gb|ADF44537.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1196]
 gi|294855201|gb|ADF44538.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E471]
 gi|294855203|gb|ADF44539.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E472]
 gi|294855205|gb|ADF44540.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E620]
 gi|294855207|gb|ADF44541.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. M1108]
 gi|294855209|gb|ADF44542.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TA290]
 gi|294855211|gb|ADF44543.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14263]
 gi|294855213|gb|ADF44544.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14264]
 gi|294855215|gb|ADF44545.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14265]
 gi|294855217|gb|ADF44546.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14266]
 gi|294855219|gb|ADF44547.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14267]
 gi|294855221|gb|ADF44548.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. RL325/96]
 gi|294855223|gb|ADF44549.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. Z205]
 gi|294855225|gb|ADF44550.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855227|gb|ADF44551.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855229|gb|ADF44552.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855231|gb|ADF44553.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855233|gb|ADF44554.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855235|gb|ADF44555.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855237|gb|ADF44556.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855239|gb|ADF44557.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia coli]
 gi|294855241|gb|ADF44558.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia coli]
 gi|294855245|gb|ADF44560.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
 gi|294855247|gb|ADF44561.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
          Length = 175

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|261194559|ref|XP_002623684.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081]
 gi|239588222|gb|EEQ70865.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081]
          Length = 615

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 40/153 (26%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
            +P+ +   LD++++GQ  AK+ +++A+ N ++R                          
Sbjct: 94  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELRAQQARRQQRTI 153

Query: 41  -------------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86
                          LP D     + K NILL+GP+GVGKT +++ LAR+   PF   + 
Sbjct: 154 HTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDC 213

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 214 TPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 246



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY  L    GI L FT
Sbjct: 436 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 495

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A+ A+++ +     GAR L+T ME +L D  F A     K V++
Sbjct: 496 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 541



 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 181 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 232

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 233 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 291

Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304
                    GS+N                                TD+ILFI SGAF
Sbjct: 292 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 348


>gi|52855708|gb|AAU88728.1| clp protease ATP-binding subunit [Shigella sp. AR-21793]
          Length = 207

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855624|gb|AAU88686.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 204

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 16  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 76  CDYDVQKAQR 85



 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 86  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 146 DTSKILFICGGAF 158


>gi|52855694|gb|AAU88721.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 16  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 76  CDYDVQKAQR 85



 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 86  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 146 DTSKILFICGGAF 158


>gi|52855660|gb|AAU88704.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 205

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 16  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 76  CDYDVQKAQR 85



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 86  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 146 DTSKILFICGGAF 158


>gi|52697084|gb|AAU86279.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855612|gb|AAU88680.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855644|gb|AAU88696.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
 gi|52855650|gb|AAU88699.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855682|gb|AAU88715.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855690|gb|AAU88719.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 199

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|52697054|gb|AAU86264.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697056|gb|AAU86265.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52697058|gb|AAU86266.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855698|gb|AAU88723.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 204

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|302171548|gb|ADK97701.1| ATP-dependent Clp protease [Escherichia coli]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+E +  +            ++  +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEVTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|168983667|dbj|BAG11712.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983669|dbj|BAG11713.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52697082|gb|AAU86278.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855594|gb|AAU88671.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 201

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 71  CDYDVQKAQR 80



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 81  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 141 DTSKILFICGGAF 153


>gi|52697086|gb|AAU86280.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855494|gb|AAU88621.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855554|gb|AAU88651.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855584|gb|AAU88666.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855634|gb|AAU88691.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 201

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|223972210|dbj|BAH23282.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855172|gb|AAU88460.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855506|gb|AAU88627.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855512|gb|AAU88630.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855702|gb|AAU88725.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 202

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 71  CDYDVQKAQR 80



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 81  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 141 DTSKILFICGGAF 153


>gi|52855596|gb|AAU88672.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855610|gb|AAU88679.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855618|gb|AAU88683.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855638|gb|AAU88693.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855640|gb|AAU88694.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855652|gb|AAU88700.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855654|gb|AAU88701.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855706|gb|AAU88727.1| clp protease ATP-binding subunit [Shigella sp. K-319]
          Length = 203

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|125615424|gb|ABN46172.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855674|gb|AAU88711.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 208

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855648|gb|AAU88698.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 202

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 13  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 73  CDYDVQKAQR 82



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 83  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 143 DTSKILFICGGAF 155


>gi|52855526|gb|AAU88637.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 214

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|125615302|gb|ABN46111.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615304|gb|ABN46112.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615306|gb|ABN46113.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615308|gb|ABN46114.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615310|gb|ABN46115.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615312|gb|ABN46116.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615314|gb|ABN46117.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615316|gb|ABN46118.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615318|gb|ABN46119.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615320|gb|ABN46120.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615322|gb|ABN46121.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615324|gb|ABN46122.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615326|gb|ABN46123.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615328|gb|ABN46124.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615330|gb|ABN46125.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615332|gb|ABN46126.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615334|gb|ABN46127.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615336|gb|ABN46128.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615338|gb|ABN46129.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615340|gb|ABN46130.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615342|gb|ABN46131.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615344|gb|ABN46132.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615346|gb|ABN46133.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615348|gb|ABN46134.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615350|gb|ABN46135.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615352|gb|ABN46136.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615354|gb|ABN46137.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615356|gb|ABN46138.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615358|gb|ABN46139.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615360|gb|ABN46140.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615362|gb|ABN46141.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615364|gb|ABN46142.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615366|gb|ABN46143.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615368|gb|ABN46144.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615370|gb|ABN46145.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615372|gb|ABN46146.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615374|gb|ABN46147.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615376|gb|ABN46148.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615378|gb|ABN46149.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615380|gb|ABN46150.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615382|gb|ABN46151.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615384|gb|ABN46152.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615386|gb|ABN46153.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615388|gb|ABN46154.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615390|gb|ABN46155.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615392|gb|ABN46156.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615394|gb|ABN46157.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615396|gb|ABN46158.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615398|gb|ABN46159.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615400|gb|ABN46160.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615402|gb|ABN46161.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615404|gb|ABN46162.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615406|gb|ABN46163.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615408|gb|ABN46164.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615410|gb|ABN46165.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615412|gb|ABN46166.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615414|gb|ABN46167.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615416|gb|ABN46168.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615418|gb|ABN46169.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615420|gb|ABN46170.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615422|gb|ABN46171.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615426|gb|ABN46173.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615428|gb|ABN46174.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615430|gb|ABN46175.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615432|gb|ABN46176.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615434|gb|ABN46177.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615436|gb|ABN46178.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615438|gb|ABN46179.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615440|gb|ABN46180.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615442|gb|ABN46181.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615444|gb|ABN46182.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615446|gb|ABN46183.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615448|gb|ABN46184.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615450|gb|ABN46185.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615452|gb|ABN46186.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615454|gb|ABN46187.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615456|gb|ABN46188.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615458|gb|ABN46189.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615460|gb|ABN46190.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615462|gb|ABN46191.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615464|gb|ABN46192.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615466|gb|ABN46193.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615468|gb|ABN46194.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615470|gb|ABN46195.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615472|gb|ABN46196.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615474|gb|ABN46197.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615476|gb|ABN46198.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615478|gb|ABN46199.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615480|gb|ABN46200.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615482|gb|ABN46201.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615484|gb|ABN46202.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615486|gb|ABN46203.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615488|gb|ABN46204.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615490|gb|ABN46205.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615492|gb|ABN46206.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615494|gb|ABN46207.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615496|gb|ABN46208.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615498|gb|ABN46209.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615500|gb|ABN46210.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615502|gb|ABN46211.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615504|gb|ABN46212.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615506|gb|ABN46213.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615508|gb|ABN46214.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615510|gb|ABN46215.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615512|gb|ABN46216.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615514|gb|ABN46217.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615516|gb|ABN46218.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615518|gb|ABN46219.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615520|gb|ABN46220.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615522|gb|ABN46221.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615524|gb|ABN46222.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615526|gb|ABN46223.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615528|gb|ABN46224.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615530|gb|ABN46225.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615532|gb|ABN46226.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615534|gb|ABN46227.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615536|gb|ABN46228.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615538|gb|ABN46229.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615540|gb|ABN46230.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615542|gb|ABN46231.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615544|gb|ABN46232.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615546|gb|ABN46233.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615548|gb|ABN46234.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615550|gb|ABN46235.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615552|gb|ABN46236.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615554|gb|ABN46237.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615556|gb|ABN46238.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615558|gb|ABN46239.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|134290119|gb|ABO70250.1| CplX [Escherichia coli]
 gi|134290121|gb|ABO70251.1| CplX [Escherichia coli]
 gi|134290123|gb|ABO70252.1| CplX [Escherichia coli]
 gi|134290125|gb|ABO70253.1| CplX [Escherichia coli]
 gi|134290127|gb|ABO70254.1| CplX [Escherichia coli]
 gi|134290129|gb|ABO70255.1| CplX [Escherichia coli]
 gi|134290131|gb|ABO70256.1| CplX [Escherichia coli]
 gi|134290133|gb|ABO70257.1| CplX [Escherichia coli]
 gi|134290135|gb|ABO70258.1| CplX [Escherichia coli]
 gi|134290137|gb|ABO70259.1| CplX [Escherichia coli]
 gi|134290139|gb|ABO70260.1| CplX [Escherichia coli]
 gi|134290141|gb|ABO70261.1| CplX [Escherichia coli]
 gi|134290143|gb|ABO70262.1| CplX [Escherichia coli]
 gi|134290145|gb|ABO70263.1| CplX [Escherichia coli]
 gi|134290147|gb|ABO70264.1| CplX [Escherichia coli]
 gi|134290149|gb|ABO70265.1| CplX [Escherichia coli]
 gi|134290151|gb|ABO70266.1| CplX [Escherichia coli]
 gi|134290153|gb|ABO70267.1| CplX [Escherichia coli]
 gi|134290155|gb|ABO70268.1| CplX [Escherichia coli]
 gi|134290157|gb|ABO70269.1| CplX [Escherichia coli]
 gi|134290159|gb|ABO70270.1| CplX [Escherichia coli]
 gi|134290161|gb|ABO70271.1| CplX [Escherichia coli]
 gi|134290163|gb|ABO70272.1| CplX [Escherichia coli]
 gi|168983657|dbj|BAG11707.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983659|dbj|BAG11708.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983661|dbj|BAG11709.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983663|dbj|BAG11710.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983665|dbj|BAG11711.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983671|dbj|BAG11714.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|168983673|dbj|BAG11715.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|168983675|dbj|BAG11716.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|223972206|dbj|BAH23280.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|223972208|dbj|BAH23281.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|223972212|dbj|BAH23283.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|239829713|gb|ACS28706.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829715|gb|ACS28707.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829717|gb|ACS28708.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829719|gb|ACS28709.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829721|gb|ACS28710.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829723|gb|ACS28711.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829725|gb|ACS28712.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829727|gb|ACS28713.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829729|gb|ACS28714.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829731|gb|ACS28715.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829733|gb|ACS28716.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829735|gb|ACS28717.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829737|gb|ACS28718.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829739|gb|ACS28719.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829741|gb|ACS28720.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829743|gb|ACS28721.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829745|gb|ACS28722.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829747|gb|ACS28723.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829749|gb|ACS28724.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829751|gb|ACS28725.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829753|gb|ACS28726.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829755|gb|ACS28727.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829757|gb|ACS28728.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829759|gb|ACS28729.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829761|gb|ACS28730.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829763|gb|ACS28731.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829765|gb|ACS28732.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829767|gb|ACS28733.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829769|gb|ACS28734.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829771|gb|ACS28735.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829773|gb|ACS28736.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829775|gb|ACS28737.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829777|gb|ACS28738.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829779|gb|ACS28739.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829781|gb|ACS28740.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829783|gb|ACS28741.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829785|gb|ACS28742.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829787|gb|ACS28743.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829789|gb|ACS28744.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829791|gb|ACS28745.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829793|gb|ACS28746.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829795|gb|ACS28747.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829797|gb|ACS28748.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829799|gb|ACS28749.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829801|gb|ACS28750.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829803|gb|ACS28751.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829805|gb|ACS28752.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829807|gb|ACS28753.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829809|gb|ACS28754.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829811|gb|ACS28755.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829813|gb|ACS28756.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829815|gb|ACS28757.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829817|gb|ACS28758.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829819|gb|ACS28759.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829821|gb|ACS28760.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829823|gb|ACS28761.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829825|gb|ACS28762.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829827|gb|ACS28763.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829829|gb|ACS28764.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829831|gb|ACS28765.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829833|gb|ACS28766.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829835|gb|ACS28767.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829837|gb|ACS28768.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829839|gb|ACS28769.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829841|gb|ACS28770.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829843|gb|ACS28771.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829845|gb|ACS28772.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829847|gb|ACS28773.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829849|gb|ACS28774.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829851|gb|ACS28775.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829853|gb|ACS28776.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829855|gb|ACS28777.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829857|gb|ACS28778.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829859|gb|ACS28779.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829861|gb|ACS28780.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829863|gb|ACS28781.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829865|gb|ACS28782.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829867|gb|ACS28783.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829869|gb|ACS28784.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829871|gb|ACS28785.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829873|gb|ACS28786.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829875|gb|ACS28787.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829877|gb|ACS28788.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829879|gb|ACS28789.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829881|gb|ACS28790.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829883|gb|ACS28791.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829885|gb|ACS28792.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829887|gb|ACS28793.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829889|gb|ACS28794.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829891|gb|ACS28795.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829893|gb|ACS28796.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829895|gb|ACS28797.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|258642951|gb|ACV86039.1| ATP-dependent Clp protease [Shigella flexneri]
 gi|297494744|gb|ADI41098.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494746|gb|ADI41099.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494748|gb|ADI41100.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494750|gb|ADI41101.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494752|gb|ADI41102.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494754|gb|ADI41103.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494756|gb|ADI41104.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494758|gb|ADI41105.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494760|gb|ADI41106.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494762|gb|ADI41107.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494764|gb|ADI41108.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494766|gb|ADI41109.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494768|gb|ADI41110.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494772|gb|ADI41112.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494774|gb|ADI41113.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494776|gb|ADI41114.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494778|gb|ADI41115.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494780|gb|ADI41116.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494782|gb|ADI41117.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494784|gb|ADI41118.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494786|gb|ADI41119.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494788|gb|ADI41120.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494790|gb|ADI41121.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494792|gb|ADI41122.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494794|gb|ADI41123.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494796|gb|ADI41124.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494798|gb|ADI41125.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494800|gb|ADI41126.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494802|gb|ADI41127.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494804|gb|ADI41128.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494806|gb|ADI41129.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494808|gb|ADI41130.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494810|gb|ADI41131.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494812|gb|ADI41132.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494814|gb|ADI41133.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494816|gb|ADI41134.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494818|gb|ADI41135.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494820|gb|ADI41136.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494822|gb|ADI41137.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494824|gb|ADI41138.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494826|gb|ADI41139.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494828|gb|ADI41140.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494830|gb|ADI41141.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494832|gb|ADI41142.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494834|gb|ADI41143.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494836|gb|ADI41144.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494838|gb|ADI41145.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494840|gb|ADI41146.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494842|gb|ADI41147.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494844|gb|ADI41148.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494846|gb|ADI41149.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494848|gb|ADI41150.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494850|gb|ADI41151.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494852|gb|ADI41152.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494854|gb|ADI41153.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494856|gb|ADI41154.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494858|gb|ADI41155.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494860|gb|ADI41156.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494862|gb|ADI41157.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494864|gb|ADI41158.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494866|gb|ADI41159.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494868|gb|ADI41160.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494870|gb|ADI41161.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494872|gb|ADI41162.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494874|gb|ADI41163.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494876|gb|ADI41164.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494878|gb|ADI41165.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494880|gb|ADI41166.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494882|gb|ADI41167.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494884|gb|ADI41168.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494886|gb|ADI41169.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494888|gb|ADI41170.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494890|gb|ADI41171.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494892|gb|ADI41172.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494894|gb|ADI41173.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494896|gb|ADI41174.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494898|gb|ADI41175.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494900|gb|ADI41176.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494902|gb|ADI41177.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494904|gb|ADI41178.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494906|gb|ADI41179.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494908|gb|ADI41180.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494910|gb|ADI41181.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494912|gb|ADI41182.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494914|gb|ADI41183.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494916|gb|ADI41184.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494918|gb|ADI41185.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494920|gb|ADI41186.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494922|gb|ADI41187.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494924|gb|ADI41188.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494926|gb|ADI41189.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494928|gb|ADI41190.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494930|gb|ADI41191.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494932|gb|ADI41192.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494934|gb|ADI41193.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494936|gb|ADI41194.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494938|gb|ADI41195.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494940|gb|ADI41196.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494942|gb|ADI41197.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494944|gb|ADI41198.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494946|gb|ADI41199.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494948|gb|ADI41200.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494950|gb|ADI41201.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494952|gb|ADI41202.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494954|gb|ADI41203.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494956|gb|ADI41204.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494958|gb|ADI41205.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494960|gb|ADI41206.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494962|gb|ADI41207.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494964|gb|ADI41208.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494966|gb|ADI41209.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494968|gb|ADI41210.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494970|gb|ADI41211.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494972|gb|ADI41212.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494974|gb|ADI41213.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494976|gb|ADI41214.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494978|gb|ADI41215.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494980|gb|ADI41216.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494982|gb|ADI41217.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494984|gb|ADI41218.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494986|gb|ADI41219.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494988|gb|ADI41220.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494990|gb|ADI41221.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494992|gb|ADI41222.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494994|gb|ADI41223.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494996|gb|ADI41224.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494998|gb|ADI41225.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495000|gb|ADI41226.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495002|gb|ADI41227.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495004|gb|ADI41228.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495006|gb|ADI41229.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495008|gb|ADI41230.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495010|gb|ADI41231.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495012|gb|ADI41232.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495014|gb|ADI41233.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495016|gb|ADI41234.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495018|gb|ADI41235.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495020|gb|ADI41236.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495022|gb|ADI41237.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495024|gb|ADI41238.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495026|gb|ADI41239.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495028|gb|ADI41240.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495030|gb|ADI41241.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495032|gb|ADI41242.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495034|gb|ADI41243.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495036|gb|ADI41244.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495038|gb|ADI41245.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495040|gb|ADI41246.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495042|gb|ADI41247.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495044|gb|ADI41248.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495046|gb|ADI41249.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495048|gb|ADI41250.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495050|gb|ADI41251.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495052|gb|ADI41252.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495054|gb|ADI41253.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495056|gb|ADI41254.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495058|gb|ADI41255.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495060|gb|ADI41256.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495062|gb|ADI41257.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495064|gb|ADI41258.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495066|gb|ADI41259.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495068|gb|ADI41260.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495070|gb|ADI41261.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495072|gb|ADI41262.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495074|gb|ADI41263.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495076|gb|ADI41264.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495078|gb|ADI41265.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495080|gb|ADI41266.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495082|gb|ADI41267.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495084|gb|ADI41268.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495086|gb|ADI41269.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495088|gb|ADI41270.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495090|gb|ADI41271.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495092|gb|ADI41272.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495094|gb|ADI41273.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495096|gb|ADI41274.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495098|gb|ADI41275.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495100|gb|ADI41276.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495102|gb|ADI41277.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495106|gb|ADI41279.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495108|gb|ADI41280.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495110|gb|ADI41281.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495112|gb|ADI41282.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495114|gb|ADI41283.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495116|gb|ADI41284.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495118|gb|ADI41285.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495120|gb|ADI41286.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495122|gb|ADI41287.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495124|gb|ADI41288.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495126|gb|ADI41289.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495128|gb|ADI41290.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495130|gb|ADI41291.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495132|gb|ADI41292.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495134|gb|ADI41293.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495136|gb|ADI41294.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495138|gb|ADI41295.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495140|gb|ADI41296.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495142|gb|ADI41297.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495144|gb|ADI41298.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495146|gb|ADI41299.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495148|gb|ADI41300.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495150|gb|ADI41301.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495152|gb|ADI41302.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495154|gb|ADI41303.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495156|gb|ADI41304.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495158|gb|ADI41305.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495160|gb|ADI41306.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495162|gb|ADI41307.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495164|gb|ADI41308.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495166|gb|ADI41309.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495168|gb|ADI41310.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495170|gb|ADI41311.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495172|gb|ADI41312.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495174|gb|ADI41313.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495176|gb|ADI41314.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495178|gb|ADI41315.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495180|gb|ADI41316.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495182|gb|ADI41317.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495184|gb|ADI41318.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495186|gb|ADI41319.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495188|gb|ADI41320.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495190|gb|ADI41321.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495192|gb|ADI41322.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495194|gb|ADI41323.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495196|gb|ADI41324.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495198|gb|ADI41325.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495200|gb|ADI41326.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495202|gb|ADI41327.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495204|gb|ADI41328.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495206|gb|ADI41329.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495208|gb|ADI41330.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495210|gb|ADI41331.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495212|gb|ADI41332.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495214|gb|ADI41333.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495216|gb|ADI41334.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495218|gb|ADI41335.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495220|gb|ADI41336.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495222|gb|ADI41337.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495224|gb|ADI41338.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495226|gb|ADI41339.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495230|gb|ADI41341.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495232|gb|ADI41342.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495234|gb|ADI41343.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495236|gb|ADI41344.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495238|gb|ADI41345.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495240|gb|ADI41346.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495242|gb|ADI41347.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495244|gb|ADI41348.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495246|gb|ADI41349.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495248|gb|ADI41350.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495250|gb|ADI41351.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495252|gb|ADI41352.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495254|gb|ADI41353.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495256|gb|ADI41354.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495258|gb|ADI41355.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495260|gb|ADI41356.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495262|gb|ADI41357.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495264|gb|ADI41358.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495266|gb|ADI41359.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495268|gb|ADI41360.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495270|gb|ADI41361.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495272|gb|ADI41362.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495274|gb|ADI41363.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495276|gb|ADI41364.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495278|gb|ADI41365.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495280|gb|ADI41366.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495282|gb|ADI41367.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495284|gb|ADI41368.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495286|gb|ADI41369.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495288|gb|ADI41370.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495290|gb|ADI41371.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495292|gb|ADI41372.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495294|gb|ADI41373.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495296|gb|ADI41374.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495298|gb|ADI41375.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495300|gb|ADI41376.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495302|gb|ADI41377.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495304|gb|ADI41378.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495306|gb|ADI41379.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495308|gb|ADI41380.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495310|gb|ADI41381.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495312|gb|ADI41382.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495314|gb|ADI41383.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495316|gb|ADI41384.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495318|gb|ADI41385.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495320|gb|ADI41386.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495322|gb|ADI41387.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495324|gb|ADI41388.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495326|gb|ADI41389.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495328|gb|ADI41390.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495330|gb|ADI41391.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495332|gb|ADI41392.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495334|gb|ADI41393.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495336|gb|ADI41394.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495338|gb|ADI41395.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495340|gb|ADI41396.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495342|gb|ADI41397.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495344|gb|ADI41398.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495346|gb|ADI41399.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495348|gb|ADI41400.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495350|gb|ADI41401.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495352|gb|ADI41402.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495354|gb|ADI41403.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495356|gb|ADI41404.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495358|gb|ADI41405.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495360|gb|ADI41406.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495362|gb|ADI41407.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495364|gb|ADI41408.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495366|gb|ADI41409.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495368|gb|ADI41410.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495370|gb|ADI41411.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495372|gb|ADI41412.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495374|gb|ADI41413.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495376|gb|ADI41414.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495378|gb|ADI41415.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495380|gb|ADI41416.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495382|gb|ADI41417.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495384|gb|ADI41418.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495386|gb|ADI41419.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495388|gb|ADI41420.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495390|gb|ADI41421.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495392|gb|ADI41422.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495394|gb|ADI41423.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495396|gb|ADI41424.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495398|gb|ADI41425.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495400|gb|ADI41426.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495402|gb|ADI41427.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495404|gb|ADI41428.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495406|gb|ADI41429.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495408|gb|ADI41430.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495410|gb|ADI41431.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495412|gb|ADI41432.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495414|gb|ADI41433.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495416|gb|ADI41434.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495418|gb|ADI41435.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495420|gb|ADI41436.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495422|gb|ADI41437.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495424|gb|ADI41438.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495426|gb|ADI41439.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495428|gb|ADI41440.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495430|gb|ADI41441.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495432|gb|ADI41442.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495434|gb|ADI41443.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495436|gb|ADI41444.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495438|gb|ADI41445.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495440|gb|ADI41446.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495442|gb|ADI41447.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495444|gb|ADI41448.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495446|gb|ADI41449.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495448|gb|ADI41450.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855672|gb|AAU88710.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855696|gb|AAU88722.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 203

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52697060|gb|AAU86267.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697066|gb|AAU86270.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 205

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|297494770|gb|ADI41111.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855664|gb|AAU88706.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855666|gb|AAU88707.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855684|gb|AAU88716.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855700|gb|AAU88724.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855704|gb|AAU88726.1| clp protease ATP-binding subunit [Shigella sp. K-380]
          Length = 201

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855582|gb|AAU88665.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855598|gb|AAU88673.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 205

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52697076|gb|AAU86275.1| clp protease ATP-binding subunit [Escherichia albertii]
          Length = 199

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855174|gb|AAU88461.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855534|gb|AAU88641.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855656|gb|AAU88702.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 200

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|52855680|gb|AAU88714.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 210

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|57996842|emb|CAI45869.1| negative response regulator [Escherichia coli]
          Length = 200

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855518|gb|AAU88633.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855528|gb|AAU88638.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855540|gb|AAU88644.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 203

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 71  CDYDVQKAQR 80



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 81  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 141 DTSKILFICGGAF 153


>gi|52855692|gb|AAU88720.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|52855632|gb|AAU88690.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 209

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|52855538|gb|AAU88643.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855602|gb|AAU88675.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 202

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|52855678|gb|AAU88713.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 210

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 16  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 76  CDYDVQKAQR 85



 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 86  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 146 DTSKILFICGGAF 158


>gi|52855670|gb|AAU88709.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855676|gb|AAU88712.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 13  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 73  CDYDVQKAQR 82



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 83  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 143 DTSKILFICGGAF 155


>gi|52855592|gb|AAU88670.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855600|gb|AAU88674.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|297495228|gb|ADI41340.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855164|gb|AAU88456.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 211

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 17  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 77  CDYDVQKAQR 86



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 87  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 147 DTSKILFICGGAF 159


>gi|52855578|gb|AAU88663.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 202

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855516|gb|AAU88632.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 204

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855140|gb|AAU88444.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855150|gb|AAU88449.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855556|gb|AAU88652.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 213

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 33  ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   +
Sbjct: 1   AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|297495104|gb|ADI41278.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|52855576|gb|AAU88662.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 209

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|52855498|gb|AAU88623.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 215

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 33  ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   +
Sbjct: 1   AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|52855504|gb|AAU88626.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 216

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 33  ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   +
Sbjct: 1   AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|52697042|gb|AAU86258.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855142|gb|AAU88445.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855546|gb|AAU88647.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855548|gb|AAU88648.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855636|gb|AAU88692.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 214

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 33  ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           A+ N ++R      LR+       EL   NILL+GPTG GKT ++  LARL   PF   +
Sbjct: 1   AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            T  TE GYVG +VE II+ L+      V++++R
Sbjct: 55  ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|71988663|ref|NP_001021562.1| hypothetical protein K07A3.3 [Caenorhabditis elegans]
 gi|51988143|gb|AAU20843.1| Hypothetical protein K07A3.3b [Caenorhabditis elegans]
          Length = 518

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 49/162 (30%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
             P+EIV  L++Y++GQ++AK+ +A+A+   +RR                          
Sbjct: 99  LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158

Query: 41  -------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLA 77
                              +Q+  DL   +D ++ K N++L+G +G GKT ++++LA + 
Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
             P +  + T  T+ GYVG +V+ +I+ L+  A+  + + +R
Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQR 260



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 75/247 (30%)

Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEG------------SSVSTK 287
           GIVFLDEFDKI         SGN   VS +GVQ+ LL LVEG            S V+  
Sbjct: 261 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 319

Query: 288 YGSI---------NTDHIL----------FIASGAFH------------------VSRPA 310
             +I         N +HI+          F+++ + H                  VS+  
Sbjct: 320 TSNILFIASGAFSNIEHIVARRMDKRSLGFLSATSPHKLGDQDTTEKLRDSDEEIVSKAR 379

Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +               ++PE+ GRFPV V    L+K+    +LT+   +LI Q K+  + 
Sbjct: 380 NEMIKQCDQGDLISFGMIPELVGRFPVIVPFHCLDKTHLMSVLTEPRGSLIAQTKKFFEN 439

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L F+  +I+A+A++AV   +     GAR L++++E+ + +  +       K V I 
Sbjct: 440 ENVELRFSPAAIEAIAEMAVKRKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEIT 494

Query: 416 AEYVRLH 422
            + ++ H
Sbjct: 495 DQNLKDH 501


>gi|52697070|gb|AAU86272.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697072|gb|AAU86273.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855588|gb|AAU88668.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 206

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52697068|gb|AAU86271.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855586|gb|AAU88667.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 208

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855552|gb|AAU88650.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 204

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 71  CDYDVQKAQR 80



 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 81  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 141 DTSKILFICGGAF 153


>gi|52855630|gb|AAU88689.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 207

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 13  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 73  CDYDVQKAQR 82



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 83  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 143 DTSKILFICGGAF 155


>gi|52697046|gb|AAU86260.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697048|gb|AAU86261.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697050|gb|AAU86262.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697052|gb|AAU86263.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855162|gb|AAU88455.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855500|gb|AAU88624.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855532|gb|AAU88640.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 212

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52697074|gb|AAU86274.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 207

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855490|gb|AAU88619.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 215

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855160|gb|AAU88454.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 211

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855166|gb|AAU88457.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 216

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 17  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 77  CDYDVQKAQR 86



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 87  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 147 DTSKILFICGGAF 159


>gi|52855590|gb|AAU88669.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 207

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 71  CDYDVQKAQR 80



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 81  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 141 DTSKILFICGGAF 153


>gi|303319225|ref|XP_003069612.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109298|gb|EER27467.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320040972|gb|EFW22905.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira]
          Length = 611

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 56/160 (35%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                        
Sbjct: 87  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146

Query: 43  ----------------LPADLRDELMPK----------------NILLVGPTGVGKTAIS 70
                            P +  D+L P                 NILL+GP+GVGKT ++
Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAA 246



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L+++    ILT+  ++L+ QY  L    GI L FT
Sbjct: 440 PPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRNSLVNQYTTLFALSGIELRFT 499

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 500 TAALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 545



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 55/174 (31%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG++V     
Sbjct: 242 -LLAAANYDVAQAEHGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAK 300

Query: 285 ----STKYG------------------------------SINTDHILFIASGAF 304
               + ++G                              ++ TD+ILFI SGAF
Sbjct: 301 PEKNAPRHGGSPTNFPGTSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAF 354


>gi|52855642|gb|AAU88695.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 207

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855562|gb|AAU88655.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 210

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855144|gb|AAU88446.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855146|gb|AAU88447.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855544|gb|AAU88646.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855550|gb|AAU88649.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855566|gb|AAU88657.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855580|gb|AAU88664.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 218

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|52855502|gb|AAU88625.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 213

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|119182495|ref|XP_001242376.1| hypothetical protein CIMG_06272 [Coccidioides immitis RS]
          Length = 612

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 56/160 (35%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                        
Sbjct: 87  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146

Query: 43  ----------------LPADLRDELMPK----------------NILLVGPTGVGKTAIS 70
                            P +  D+L P                 NILL+GP+GVGKT ++
Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAA 246



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L+++    ILT+  ++L+ QY  L    GI L FT
Sbjct: 441 PPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRNSLVNQYTTLFALSGIELRFT 500

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 501 TAALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 546



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 55/174 (31%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG++V     
Sbjct: 242 -LLAAANYDVAQAEHGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAK 300

Query: 285 ----STKYG------------------------------SINTDHILFIASGAF 304
               + ++G                              ++ TD+ILFI SGAF
Sbjct: 301 PEKNAPRHGGSPTNFPGTSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAF 354


>gi|52855608|gb|AAU88678.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855646|gb|AAU88697.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 207

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 70  CDYDVQKAQR 79



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 80  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 140 DTSKILFICGGAF 152


>gi|52855148|gb|AAU88448.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855152|gb|AAU88450.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 219

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|52697044|gb|AAU86259.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 217

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|52855158|gb|AAU88453.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855492|gb|AAU88620.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855558|gb|AAU88653.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855572|gb|AAU88660.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855574|gb|AAU88661.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 217

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855168|gb|AAU88458.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 217

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 17  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 77  CDYDVQKAQR 86



 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 87  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 147 DTSKILFICGGAF 159


>gi|261755784|ref|ZP_05999493.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3
           str. 686]
 gi|261745537|gb|EEY33463.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3
           str. 686]
          Length = 57

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG     TD+  FIL
Sbjct: 3   NIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIGGLAKNTDLSRFIL 57


>gi|52697062|gb|AAU86268.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697064|gb|AAU86269.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 215

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 15  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 75  CDYDVQKAQR 84



 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 85  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 145 DTSKILFICGGAF 157


>gi|60117397|gb|AAX14456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila mojavensis]
          Length = 176

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 12/126 (9%)

Query: 303 AFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           A H  +P DL+     PE  GR P+   L  L+  D   +LT+  + LI QYK L+    
Sbjct: 23  ALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSK 82

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVID 415
           + L+F++++I A+A  A++  +     GAR L+ ++E +L DI +++ +   +  T+VI 
Sbjct: 83  VNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVIT 137

Query: 416 AEYVRL 421
            + V+L
Sbjct: 138 KKMVQL 143


>gi|52855154|gb|AAU88451.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855156|gb|AAU88452.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 218

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 18  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 78  CDYDVQKAQR 87



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 88  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 148 DTSKILFICGGAF 160


>gi|52855658|gb|AAU88703.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855668|gb|AAU88708.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855686|gb|AAU88717.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 213

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855508|gb|AAU88628.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 211

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|52855170|gb|AAU88459.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 214

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 14  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 74  CDYDVQKAQR 83



 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 84  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 144 DTSKILFICGGAF 156


>gi|52855488|gb|AAU88618.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855536|gb|AAU88642.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 220

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 19  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 79  CDYDVQKAQR 88



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 89  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 149 DTSKILFICGGAF 161


>gi|71988660|ref|NP_001021561.1| hypothetical protein K07A3.3 [Caenorhabditis elegans]
 gi|31746617|gb|AAF39912.2| Hypothetical protein K07A3.3a [Caenorhabditis elegans]
          Length = 356

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 49/162 (30%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
             P+EIV  L++Y++GQ++AK+ +A+A+   +RR                          
Sbjct: 99  LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158

Query: 41  -------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLA 77
                              +Q+  DL   +D ++ K N++L+G +G GKT ++++LA + 
Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
             P +  + T  T+ GYVG +V+ +I+ L+  A+  + + +R
Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQR 260



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 13/72 (18%)

Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292
           GIVFLDEFDKI         SGN   VS +GVQ+ LL LVEGS V  +         +I+
Sbjct: 261 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 319

Query: 293 TDHILFIASGAF 304
           T +ILFIASGAF
Sbjct: 320 TSNILFIASGAF 331


>gi|52697078|gb|AAU86276.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697080|gb|AAU86277.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 212

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 72  CDYDVQKAQR 81



 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 82  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 142 DTSKILFICGGAF 154


>gi|255083629|ref|XP_002508389.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299]
 gi|226523666|gb|ACO69647.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299]
          Length = 877

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 6/114 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFPV V L+SL + +   +L    + +  QY+ LM+  G+ L+FT+ ++  +A
Sbjct: 713 LIPEFVGRFPVTVPLRSLGEDELVRVLMGPRNAVGRQYQRLMRMHGVDLEFTDGALRVIA 772

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIG 424
             A+       + GAR L+T++ER+L +  F   D  +   VV+D    R  +G
Sbjct: 773 RAALRR-----ETGARGLRTLVERLLTEAMFEVPDAPDVVKVVVDESSARRGLG 821



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NILL GPTG GKT +++ LA     P +  + T  T+ GYVG +VE ++  L+  A
Sbjct: 437 NILLCGPTGSGKTLLAKTLAEFVDVPIVIADATTLTQAGYVGEDVESLLHKLLQAA 492



 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DK+  +     I   VS EGVQ+ LL +VEG+  +V  K G          +
Sbjct: 502 GIVYIDEIDKLTRKSENLSITRDVSGEGVQQALLKMVEGTVVNVPEKGGRKNPRGDFIQV 561

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 562 DTSDILFICGGAF 574



 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
           +PR +V  LD Y++GQ  AK+ +A+A+ N ++R
Sbjct: 260 TPRRMVQMLDAYVVGQTHAKKVLAVAVYNHYKR 292


>gi|332375668|gb|AEE62975.1| unknown [Dendroctonus ponderosae]
          Length = 582

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 106/254 (41%), Gaps = 89/254 (35%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 365

Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312
               ++T +ILF+ASGA++                             V++ A L     
Sbjct: 366 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVTAGQGRRAVAQEATLHSSTQ 425

Query: 313 ------------LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLI 346
                       L ++Q R              FPV V   SL++S    ILT+  + LI
Sbjct: 426 SAEEENLEKDQALRQVQARDLIDFGMIPEFVGRFPVLVPFHSLDQSMLVRILTEPNNALI 485

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+  +   L FT D+++A+A  A++  +     GAR L+ +ME +L +  F    
Sbjct: 486 PQYQRLLAMDQCQLSFTSDALNAIASQAMDRKT-----GARGLRAIMETLLLEPMFEVPG 540

Query: 407 LQEKTVVIDAEYVR 420
                V +  E VR
Sbjct: 541 AGISEVHVTDECVR 554



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 242 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 301

Query: 110 A 110
           A
Sbjct: 302 A 302


>gi|72028078|ref|XP_797563.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli)
           [Strongylocentrotus purpuratus]
 gi|115950156|ref|XP_001175999.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli)
           [Strongylocentrotus purpuratus]
          Length = 615

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 9/111 (8%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFP+ V L SL++   + ILT+  + +I Q++ L K +   L  T+D++ A+A
Sbjct: 484 MIPEFVGRFPIFVSLGSLDEEMLQRILTEPRNAIIPQFEALFKMDSCQLTITDDALKAVA 543

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420
            +A+   +     GAR L+++ME +L +  F    SD++E  V++DAE V+
Sbjct: 544 QLALERKT-----GARGLRSIMEIILLESMFEIPGSDIEE--VIVDAEVVQ 587



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 11/118 (9%)

Query: 6   NFSPREI-----VSELDRYI---IGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNI 56
           NF+PRE+     +S     +    GQQ A+       ++R   + L A++ D +L   NI
Sbjct: 223 NFTPRELLQLAGISNQGNALGASSGQQGAQGPTETDHQHRGS-ELLYANVFDLKLDKSNI 281

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           L++GPTG GKT +++ +A     PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 282 LMLGPTGSGKTLLAQTIATCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADANFNV 339



 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GI+FLDE DKI A       RD G       EGVQ+ LL L+EG+ V+    S       
Sbjct: 345 GIIFLDEVDKIGAVPGIHQLRDVGG------EGVQQGLLKLLEGTVVNVPERSSRKLRGE 398

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 399 SVPVDTTNILFVASGAFN 416


>gi|321258063|ref|XP_003193801.1| ATP-dependent Clp protease ATP-binding subunit [Cryptococcus gattii
           WM276]
 gi|317460271|gb|ADV22014.1| ATP-dependent Clp protease ATP-binding subunit, putative
           [Cryptococcus gattii WM276]
          Length = 611

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           N+L++GPTG GKT ++R LARL   PF+  + T +T+ GYVG +VE  +  L+  A
Sbjct: 222 NVLMIGPTGTGKTLMARTLARLLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277



 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMP 53
          SP+ + S L +Y++GQ+ AKR +++A+ N ++R    LP+    EL P
Sbjct: 8  SPKHLYSHLSKYVVGQERAKRILSVAVYNHYQRIAPLLPSVDEQELSP 55



 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L+  D   ILT+  + L+ QY +L    G  L FT+ ++  +A
Sbjct: 482 LIPEFLGRLPILSTLHPLSIDDMVRILTEPNNALLKQYIKLFGNYGSELCFTDKAVREIA 541


>gi|302656403|ref|XP_003019955.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517]
 gi|291183732|gb|EFE39331.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517]
          Length = 603

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 50/162 (30%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q+L                       
Sbjct: 88  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147

Query: 44  ----------PADLRDELMPK----------------NILLVGPTGVGKTAISRRLARLA 77
                     P    D+ +P                 NILL+GP+GVGKT +++ LAR+ 
Sbjct: 148 PVEADYTSFRPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMAKTLARVL 207

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
             PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 208 SVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531



 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294

Query: 288 --------------------YGS------------INTDHILFIASGAF 304
                               Y S            I TD+ILFI SGAF
Sbjct: 295 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 343


>gi|255950672|ref|XP_002566103.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593120|emb|CAP99496.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 579

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 52/164 (31%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40
           +P+ +   LD+Y++GQ  AK+ +++A+ N ++R                           
Sbjct: 84  TPKVLKQYLDQYVVGQDRAKKVLSVAVYNHYQRVQELVRREEEAAEALAKRQRREALETH 143

Query: 41  -----------QQLP----------ADLRD----ELMPKNILLVGPTGVGKTAISRRLAR 75
                       Q P          AD  D    +L   NILL+GP+GVGKT +++ LAR
Sbjct: 144 HLDGVQKTTSVPQTPRSRPNTPLEQADFADTSPLQLEKSNILLLGPSGVGKTLMAKTLAR 203

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           +   PF   + T FT+ GY+G + E  +  L+  A   V ++ R
Sbjct: 204 VLSVPFSISDCTVFTQAGYIGEDAEVCVHRLLAAADYNVEQAER 247



 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 27/157 (17%)

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL-----LPEIQ 317
           LP++ GS     Y      H+ F +S              A  +  P+DL     +PE+ 
Sbjct: 361 LPILPGSEEEALY----KKHLPFFSSASPAGSGAEPTYFNALDLLTPSDLQSYGFIPELI 416

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV   L +L++     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  +
Sbjct: 417 GRIPVTAALSALSQPLLMRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAGNAFAM 476

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            +     GAR L+T ME +L D  F A     K V++
Sbjct: 477 GT-----GARALRTEMETILSDAMFEAPGSSVKFVLV 508



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 11/71 (15%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-----------STKYGSINT 293
           GI+ LDE DKI A    +G  V  EGVQ+ LL ++EG++V           +TK  ++ T
Sbjct: 248 GIIVLDEVDKIAAAKVSHGKDVGGEGVQQALLKIIEGTTVQVQAKPEKNPRATKVYNVRT 307

Query: 294 DHILFIASGAF 304
           D+ILF+ SGAF
Sbjct: 308 DNILFVFSGAF 318


>gi|315636710|ref|ZP_07891940.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
 gi|315479025|gb|EFU69728.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
          Length = 147

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR  +   L  + + D   ILT+ ++ LI QY +L + + ++L+F +D++  LA
Sbjct: 32  LIPELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLEFEKDALKELA 91

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+     V   GAR L++++E ++ DI F     + KTVVI  E V
Sbjct: 92  KLAI-----VRKTGARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVV 134


>gi|50310995|ref|XP_455520.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644656|emb|CAG98228.1| KLLA0F09691p [Kluyveromyces lactis]
          Length = 505

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 50/150 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40
           SP+E+ + LD YI+GQ D K+  ++A+ N + R                           
Sbjct: 32  SPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKLDST 91

Query: 41  ------------------QQLPADLRD-----ELMPKNILLVGPTGVGKTAISRRLARLA 77
                             +QL  +L +     EL   N+++VGP+G GKT ++  LAR+ 
Sbjct: 92  SPIEFTSTEAEQGMRNLQRQLSLELDNDDEDLELSKSNLMVVGPSGSGKTLLATTLARML 151

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             P    + T+ T+ GY+G +VE  I  L+
Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLL 181



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 84/255 (32%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS------------- 290
           GI+ LDE DK+    +  G   VS EGVQ+ LL ++EG  V                   
Sbjct: 194 GIIVLDEVDKLAKPAASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQT 253

Query: 291 ---------INTDHILFIASGAF-----HVSR---------------------------- 308
                    ++T +ILF+  GAF     H+ +                            
Sbjct: 254 AAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTI 313

Query: 309 ------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                             P+DL     +PE+ GR P+   L+ L ++D   IL +  + L
Sbjct: 314 EHIDIGDGKTISALNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEPRNAL 373

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY+ + K  G+ L  TE ++  +A  A+   +     GAR L+ +MER+L ++++   
Sbjct: 374 LHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGT-----GARGLRGIMERLLLNVNYECP 428

Query: 406 DLQEKTVVIDAEYVR 420
           D     V+++ E V+
Sbjct: 429 DSGISYVLVNEETVK 443


>gi|322790222|gb|EFZ15221.1| hypothetical protein SINV_05303 [Solenopsis invicta]
          Length = 404

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 39/149 (26%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADL-----------------R 48
           + I   LD+ ++GQ  AKR +++A+ N ++R    Q +   L                 R
Sbjct: 15  KAIYKYLDKCVVGQLHAKRVLSVAVYNHYKRIYNNQPVAKSLEQTNLVNTQEINHLFTDR 74

Query: 49  D--------ELMPKN----------ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           D         L+PKN          I+++GPTG GKT +   +A     PF+  + +  T
Sbjct: 75  DLKSSSSNGNLVPKNDKKHQLAKSNIMMIGPTGSGKTLLIETIAEFLNVPFVICDCSALT 134

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + GY G + E II++L+  A  +V ++ +
Sbjct: 135 QSGYYGDDPENIIKNLLQKADGVVEQAEK 163



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +LN+     IL + ++ +I QY+ L   + + L F ++++ A+A
Sbjct: 291 MIPEFIGRFPVLVPFHTLNEDVLARILIEPKNAIIPQYQMLFSKDKVKLTFDKNALTAIA 350

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+T++E +L +  F
Sbjct: 351 SLALEKGT-----GARGLRTIIESLLLEPMF 376



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG--------SINTDHI 296
           GIVFLDE DKI       G  V+ EGVQ++LL ++EG+ +  K           ++T +I
Sbjct: 164 GIVFLDEVDKIKTM-INKGRDVAGEGVQQELLKMLEGTIIYVKNNRLQDKNEIPVDTTNI 222

Query: 297 LFIASGAF 304
           LF+ASGA+
Sbjct: 223 LFVASGAY 230


>gi|70990236|ref|XP_749967.1| ATP-dependent Clp protease [Aspergillus fumigatus Af293]
 gi|66847599|gb|EAL87929.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus Af293]
 gi|159130447|gb|EDP55560.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus A1163]
          Length = 638

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 53/165 (32%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                         
Sbjct: 110 TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEEKAELLARQARREALEHH 169

Query: 43  -----LPADLRDELMP-----------------------KNILLVGPTGVGKTAISRRLA 74
                 P   R   +P                        NILL+GP+GVGKT +++ LA
Sbjct: 170 PAEDEFPGQQRTVHLPTSPKSTTSNEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKTLA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           R+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R
Sbjct: 230 RVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 274



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    +S ++  G    +   F    A  +  P DL     +PE+ GR
Sbjct: 424 GSEEEALYKKHLPFFTAASPTSPDG----EPPYF---NALDLLNPTDLQNYGFIPELIGR 476

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L +L++     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +
Sbjct: 477 IPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAANAFAMGT 536

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F       K V+I
Sbjct: 537 -----GARALRTEMENILSDAMFETPGSSVKFVLI 566



 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 63/179 (35%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233
           SN  + G + VG   +++  ++V+       +  S+  C P          I  D    V
Sbjct: 209 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 258

Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-- 284
           HR  +    NY       GI+ LDE DKI A    +G  VS EGVQ+ LL ++EG++V  
Sbjct: 259 HR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEGTTVQV 316

Query: 285 --------------STKYGSIN-------------------------TDHILFIASGAF 304
                          + Y S N                         TD+ILFI SGAF
Sbjct: 317 QAKQERNAHRTSGTPSSYPSNNPFGNSPFSQSPTGNAPQKGEIYNVRTDNILFIFSGAF 375


>gi|294855243|gb|ADF44559.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
          Length = 175

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL    ILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSTILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR 119
               V++++R
Sbjct: 61  CDYDVQKAQR 70



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  + G          +
Sbjct: 71  GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 131 DTSKILFICGGAF 143


>gi|113205069|ref|NP_001037854.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial isoform 2 [Mus musculus]
 gi|38174645|gb|AAH61153.1| Caseinolytic peptidase X (E.coli) [Mus musculus]
          Length = 620

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 60/162 (37%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPK------- 54
           I + LD+Y++GQ  AK+ +++A+ N ++R          QQ  A+ +  L P+       
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 232

Query: 55  ------------------------------------------NILLVGPTGVGKTAISRR 72
                                                     NILL+GPTG GKT +++ 
Sbjct: 233 ISPHGNALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKSNILLLGPTGSGKTLLAQT 292

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           LA+    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 293 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 334



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 479 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 538

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 539 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 581



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 340 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 396

Query: 291 INTDHILFIASGAFH 305
           ++T ++LF+ASGAF+
Sbjct: 397 VDTTNVLFVASGAFN 411


>gi|291402836|ref|XP_002718045.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1
           [Oryctolagus cuniculus]
          Length = 619

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 60/162 (37%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPK------- 54
           I + LD+Y++GQ  AK+ +++A+ N ++R          QQ  A+ +  L P+       
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 231

Query: 55  ------------------------------------------NILLVGPTGVGKTAISRR 72
                                                     NILL+GPTG GKT +++ 
Sbjct: 232 ISPHGNALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKSNILLLGPTGSGKTLLAQT 291

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           LA+    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 292 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 333



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 14/127 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 478 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 537

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE---------YVRLH 422
            +A+   +     GAR L+++ME++L +  F   +     V +D E         Y+R  
Sbjct: 538 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRAP 592

Query: 423 IGDFPSE 429
             D P E
Sbjct: 593 AKDSPEE 599



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 339 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 395

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 396 VDTTNILFVASGAFN 410


>gi|156550057|ref|XP_001605256.1| PREDICTED: similar to ATP-dependent clp protease atp-binding
           subunit clpx [Nasonia vitripennis]
          Length = 592

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 89/236 (37%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 322 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 375

Query: 291 ----INTDHILFIASGAFH-----VSR------------PAD------------------ 311
               ++T +ILF+ASGA++     VSR            PA                   
Sbjct: 376 DTLQVDTTNILFVASGAYNGLDRLVSRRKNEKYLGFGATPASESPGRRAASLADVANMSP 435

Query: 312 -----------LLPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLI 346
                      LL +++ R              FPV V   +LN+     ILT+ ++ ++
Sbjct: 436 STEDDNKEKDVLLRQVEARDLIDFGMIPEFVGRFPVLVPFHTLNREMLVRILTEPKNAMV 495

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            QY+ L   + + L FT +++DA+A +A+   +     GAR L+ +ME +L +  F
Sbjct: 496 PQYQMLFSMDKVELTFTPEALDAIASMAMERKT-----GARGLRAIMESLLLEPMF 546



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A  +V
Sbjct: 257 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 316


>gi|52219008|ref|NP_001004581.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Danio rerio]
 gi|51859089|gb|AAH81643.1| Zgc:92303 [Danio rerio]
          Length = 610

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 65/190 (34%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR------------------------------- 40
           I + LD+Y++GQ  AK+ +++A+ N ++R                               
Sbjct: 161 IFAYLDKYVVGQDHAKKVLSVAVYNHYKRIYNNMPAGSRQQQVEVEKQASLTPRELLQIA 220

Query: 41  ------------------QQLPADLRD-----------ELMPKNILLVGPTGVGKTAISR 71
                             QQ P + R            +L   NI+L+GPTG GKT +++
Sbjct: 221 GISPHGNALGASMQQQLNQQTPPEKRGGEVLDSTHTDIKLEKSNIVLLGPTGSGKTLLAQ 280

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQA 126
            LA+    PF   + T  T+ GYVG ++E +I  L+  A  ++ ++++     DEV +  
Sbjct: 281 TLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVIEKAQQGIVFLDEVDKIG 340

Query: 127 SINAEERILD 136
           S+    ++ D
Sbjct: 341 SVPGIHQLRD 350



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ T D++ A+A
Sbjct: 469 MIPEFVGRLPVVVPLHSLDEETLVRILTEPRNAVVPQYQALFSMDKCELNMTPDALRAIA 528

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+++ME++L D  F
Sbjct: 529 RLALERKT-----GARGLRSIMEKLLLDPMF 554



 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 329 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNTRKLRGETVQ 385

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 386 VDTTNILFVASGAFN 400


>gi|6478309|gb|AAF13813.1|AF130815_5 heat shock protein HslU [Buchnera aphidicola]
          Length = 72

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425
           I  +A++A   N ++ +IGARRL TV+E ++EDISF+AS+ + + VV ID EYV  H+ D
Sbjct: 1   IRYIAEIAWKANESIENIGARRLYTVLEHLMEDISFNASNNKTEIVVNIDKEYVSKHLDD 60

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 61  LILNNDLSRFIL 72


>gi|119497351|ref|XP_001265434.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL
           181]
 gi|119413596|gb|EAW23537.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL
           181]
          Length = 591

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 55/167 (32%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                         
Sbjct: 61  TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLARRARRQALEHH 120

Query: 43  -----LPADLRDELMP-------------------------KNILLVGPTGVGKTAISRR 72
                 P   R   +P                          NILL+GP+GVGKT +++ 
Sbjct: 121 PAEDEFPGQQRTVHLPTSPKSTTSNPDEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKT 180

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           LAR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R
Sbjct: 181 LARVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 227



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    +S ++  G    +   F    A  +  P DL     +PE+ GR
Sbjct: 377 GSEEEALYKKHLPFFTAASPTSPDG----EPPYF---NALDLLNPTDLQNYGFIPELIGR 429

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L +L++     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +
Sbjct: 430 IPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAANAFAMGT 489

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F       K V+I
Sbjct: 490 -----GARALRTEMENILSDAMFETPGSSVKFVLI 519



 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 63/179 (35%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233
           SN  + G + VG   +++  ++V+       +  S+  C P          I  D    V
Sbjct: 162 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 211

Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-- 284
           HR  +    NY       GI+ LDE DK+ A    +G  VS EGVQ+ LL ++EG++V  
Sbjct: 212 HR--LLAAANYDVEQAERGIIVLDEVDKLAAAKVNHGKDVSGEGVQQALLKIIEGTTVQV 269

Query: 285 --------------STKYGSIN-------------------------TDHILFIASGAF 304
                          + Y S N                         TD+ILFI SGAF
Sbjct: 270 QAKQERNAHRTSGTPSSYPSNNPLGNPPFSQSPTGNAPQKGEIYNVRTDNILFIFSGAF 328


>gi|167042795|gb|ABZ07513.1| hypothetical protein ALOHA_HF4000ANIW137I15ctg1g1 [uncultured
           marine microorganism HF4000_ANIW137I15]
          Length = 82

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 46  DLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           DL D E+   N+LL+GPTG GKT +++ +AR+   PF  V+ T   E GYVG +VE II 
Sbjct: 2   DLNDVEIQKSNVLLIGPTGSGKTLLAQTMARILDVPFAIVDATTLNEAGYVGEDVENIIL 61

Query: 105 DLVDVAINIVRESRR 119
            L+  A   V+ + R
Sbjct: 62  KLLQNADYDVQRAER 76


>gi|58265886|ref|XP_570099.1| chaperone [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110598|ref|XP_776126.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258794|gb|EAL21479.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226332|gb|AAW42792.1| chaperone, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 629

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           N+L++GPTG GKT ++R LA++   PF+  + T +T+ GYVG +VE  +  L+  A
Sbjct: 222 NVLMIGPTGTGKTLMARTLAQMLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277



 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+   L  L+  D   IL +  + L+ QY +L +  G  L FT+ ++  +A
Sbjct: 500 LIPEFLGRLPILSTLHPLSIDDMVRILAEPNNALLKQYIKLFENYGSELCFTDKAVREIA 559

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
              ++         AR L+ V+E VL D  F       +  +I    VR
Sbjct: 560 REGLDRGGG-----ARGLRGVLEEVLLDAMFEVPGSSVRYCLITEAVVR 603


>gi|119222225|gb|ABL62310.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222227|gb|ABL62311.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222229|gb|ABL62312.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222231|gb|ABL62313.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222233|gb|ABL62314.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222235|gb|ABL62315.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222237|gb|ABL62316.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222239|gb|ABL62317.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222241|gb|ABL62318.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 199

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 115 RESRR 119
             ++R
Sbjct: 62  ERAQR 66



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 67  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 127 DTTNILFICGGAF 139


>gi|326485123|gb|EGE09133.1| ATP-dependent Clp protease [Trichophyton equinum CBS 127.97]
          Length = 604

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q                         
Sbjct: 81  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140

Query: 43  -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70
                 P   R           D+ +P                 NILL+GP+GVGKT ++
Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531



 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294

Query: 290 ----------------------------------SINTDHILFIASGAF 304
                                             +I TD+ILFI SGAF
Sbjct: 295 PERNASRPSAGGSGSSSGTSYNPTSGPSGKAEVYNIRTDNILFIFSGAF 343


>gi|302505569|ref|XP_003014491.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371]
 gi|291178312|gb|EFE34102.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371]
          Length = 610

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q                         
Sbjct: 88  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147

Query: 43  -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70
                 P   R           D+ +P                 NILL+GP+GVGKT ++
Sbjct: 148 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 207

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 208 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 256



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 433 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 492

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 493 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 538



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 191 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 242

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 243 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 301

Query: 288 --------------------YGS------------INTDHILFIASGAF 304
                               Y S            I TD+ILFI SGAF
Sbjct: 302 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 350


>gi|327300811|ref|XP_003235098.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
 gi|326462450|gb|EGD87903.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
          Length = 594

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q                         
Sbjct: 72  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 131

Query: 43  -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70
                 P   R           D+ +P                 NILL+GP+GVGKT ++
Sbjct: 132 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 191

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 192 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 240



 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 417 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 476

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 477 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 522



 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 175 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 226

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 227 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 285

Query: 288 --------------------YGS------------INTDHILFIASGAF 304
                               Y S            I TD+ILFI SGAF
Sbjct: 286 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 334


>gi|119222397|gb|ABL62396.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222399|gb|ABL62397.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222401|gb|ABL62398.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222403|gb|ABL62399.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222405|gb|ABL62400.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222407|gb|ABL62401.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222421|gb|ABL62408.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222423|gb|ABL62409.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus
           NewJersey2]
 gi|119222425|gb|ABL62410.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222427|gb|ABL62411.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222429|gb|ABL62412.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222431|gb|ABL62413.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222433|gb|ABL62414.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222435|gb|ABL62415.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222437|gb|ABL62416.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222439|gb|ABL62417.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 115 RESRR 119
             ++R
Sbjct: 62  ERAQR 66



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 67  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 127 DTTNILFICGGAF 139


>gi|119222469|gb|ABL62432.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222471|gb|ABL62433.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222473|gb|ABL62434.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222475|gb|ABL62435.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222477|gb|ABL62436.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222479|gb|ABL62437.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222483|gb|ABL62439.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222485|gb|ABL62440.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222487|gb|ABL62441.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 115 RESRR 119
             ++R
Sbjct: 61  ERAQR 65



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 66  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 125

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 126 DTTNILFICGGAF 138


>gi|119222243|gb|ABL62319.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222245|gb|ABL62320.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222247|gb|ABL62321.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222249|gb|ABL62322.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222251|gb|ABL62323.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222253|gb|ABL62324.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 115 RESRR 119
             ++R
Sbjct: 61  ERAQR 65



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 66  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 125

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 126 DTTNILFICGGAF 138


>gi|119222481|gb|ABL62438.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 2   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61

Query: 115 RESRR 119
             ++R
Sbjct: 62  ERAQR 66



 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 67  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 127 DTTNILFICGGAF 139


>gi|255719754|ref|XP_002556157.1| KLTH0H06380p [Lachancea thermotolerans]
 gi|238942123|emb|CAR30295.1| KLTH0H06380p [Lachancea thermotolerans]
          Length = 508

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 51/162 (31%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-----RRQQLPADLRDELMPK-------- 54
           SP+E+   LD Y++GQ   K+ +++A+ N +     +++++ A L+ EL+ K        
Sbjct: 32  SPKELRKFLDNYVVGQTTGKKVLSVAVYNHYLRVNDKQKRIDAKLQRELLEKQQQEDDKD 91

Query: 55  -------------------------------------NILLVGPTGVGKTAISRRLARLA 77
                                                N+L+VGP+G GKT ++  LAR+ 
Sbjct: 92  EPIYTGSNEAKVGFQNLQTQLARGMDPKDDDLELSKSNVLVVGPSGSGKTLLASTLARVL 151

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINIVRESR 118
             P    + T+ T+ GY+G +VE  I R L++   ++ +  R
Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAER 193



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 87/258 (33%)

Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSS-------------------- 283
           GI+ LDE DK+    +  G   VS EGVQ+ LL ++EG S                    
Sbjct: 194 GIIVLDELDKLAKPAASIGTKDVSGEGVQQALLKILEGHSIEVTVKRPINKKKDGQNNNQ 253

Query: 284 VSTKYGS---INTDHILFIASGAF-----HVSR--------------------------- 308
           VS K      ++T +ILF+  GAF     HV +                           
Sbjct: 254 VSAKKDETFVVDTSNILFMLMGAFVGLDKHVVKRINRLKAISNGETIEDKSEDSKRLRFS 313

Query: 309 ---------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                P DL     +PE+ GR P+   L+ L ++D   IL + +
Sbjct: 314 NTIEKVELSNGKKVSALNLATPTDLVAYGLIPELIGRVPIITALEPLERTDLYHILREPK 373

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L+ QY+ + K  G+ L  TE ++  +A  A++  +     GAR L+ +MER+L ++++
Sbjct: 374 NALLNQYEYIFKQFGVKLCVTEKALMKVAHFALDEGT-----GARGLRGIMERLLLNVNY 428

Query: 403 SASDLQEKTVVIDAEYVR 420
                    V+++ + V+
Sbjct: 429 ECPGSGISYVLVNEDTVK 446


>gi|121703305|ref|XP_001269917.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1]
 gi|119398060|gb|EAW08491.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 51/163 (31%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q+L                       
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRRDEENAELLARRARREAIEHH 145

Query: 44  PAD-----LRDELMPK----------------------NILLVGPTGVGKTAISRRLARL 76
           PA+           PK                      NILL+GP+GVGKT +++ LAR+
Sbjct: 146 PAEGQQRTAHPPPHPKPIASIPDDSALGASSALHLEKSNILLLGPSGVGKTLMAKTLARV 205

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
              PF   + T FT+ GY+G + E  +  L+  A   V ++ R
Sbjct: 206 LSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 248



 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 17/155 (10%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    SS +    S +++   F    A  +  P DL     +PE+ GR
Sbjct: 399 GSEEEALYKKYLPFFTASSPT----SPDSEPTYF---NALDLLNPTDLQSYGFIPELVGR 451

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L +L++S    ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +
Sbjct: 452 IPVTAALSTLSQSLLVRILTEPRNSLLAQYITLFSLSGIELRFTSSALHRVAANAFTMGT 511

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F       K V++
Sbjct: 512 -----GARALRTEMETILSDAMFETPGSSVKFVLV 541



 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 69/179 (38%), Gaps = 63/179 (35%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233
           SN  + G + VG   +++  ++V+       +  S+  C P          I  D    V
Sbjct: 183 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 232

Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           HR  +    NY       GI+ LDE DKI A    +G  V  EGVQ+ LL ++EG++V  
Sbjct: 233 HR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVGGEGVQQALLKIIEGTTVQV 290

Query: 287 K----------------YGSIN-------------------------TDHILFIASGAF 304
           +                Y S N                         TD+ILFI SGAF
Sbjct: 291 QAKQEKGAPRTSGAPNSYPSNNPLGNASFSQSNTGNISQKGEVYNVRTDNILFICSGAF 349


>gi|46205724|ref|ZP_00048164.2| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 56/205 (27%)

Query: 266 VSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------- 304
           +S EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF          
Sbjct: 1   MSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQR 60

Query: 305 ----------HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFR 335
                      V  P D                   L+PE  GR PV   L+ L++   +
Sbjct: 61  GKGTSIGFGASVQAPDDRRTGEIFRSVEPEDLLKFGLIPEFVGRLPVLATLEDLDEEALK 120

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L+ QY+ L + E + L F ++++  +A  A+   +     GAR L++++E 
Sbjct: 121 KILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKT-----GARGLRSILET 175

Query: 396 VLEDISFSASDLQE-KTVVIDAEYV 419
           +L D  +    L   + VVI  E V
Sbjct: 176 ILLDTMYDLPGLDSVEQVVIGPEVV 200


>gi|325662428|ref|ZP_08151034.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471262|gb|EGC74486.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 155

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F ED++  +A
Sbjct: 26  LIPELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEIA 85

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
            ++++  +     GAR L+ ++E V+ D  F   SD + KT  I    V+
Sbjct: 86  KISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 130


>gi|315453009|ref|YP_004073279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           felis ATCC 49179]
 gi|315132061|emb|CBY82689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           felis ATCC 49179]
          Length = 896

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            +SP+ I + LD+++IGQ+ AK+ +++   + ++R +  + L       N + +GP+G G
Sbjct: 587 KYSPKAIKAYLDQFVIGQEQAKKQMSLVFSDHYKRIRGQSSLEK----ANAICIGPSGSG 642

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +     +    P+       FT  GY+G    Q+   L   A   ++++++
Sbjct: 643 KTFLIEMATKYLDLPYCIANAASFTPTGYIGNETNQMFATLYSSADKDIQKAQK 696



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 43/204 (21%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVS---REGVQRDLLPLVEGSSVSTKYG--------SINT 293
           G++ LDE DK+     G G       R+GVQ +LL ++E   VS  YG        ++ T
Sbjct: 697 GVLVLDEIDKL-----GQGSWHDKEWRQGVQNELLKVIEKGIVSFDYGGRASGETITLQT 751

Query: 294 DHILFIASGAFHV----SRPADLLPEIQG--------------RFPVRVHLKSLNKSDFR 335
           DH+LFI  G F      +  ++ LP+                 RF VRV  ++++     
Sbjct: 752 DHMLFIVLGHFEKLWKDNSSSEKLPQFSNEDLIECGMKREFLRRFSVRVVFEAVDIE--- 808

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            +LT+     +  ++E  + EG +L+F++++   L       N+    +G   L   +  
Sbjct: 809 -MLTELLDRRLKPFQEEFRAEGSVLEFSQEAKHLLVK-----NALKEGVGMSGLDQKLHE 862

Query: 396 VLEDISFSASDLQEKTVVIDAEYV 419
           VL  + F   +      +ID +++
Sbjct: 863 VLMPLRFDLENYYGLRCLIDFDHL 886


>gi|126277064|ref|XP_001367093.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 2
           [Monodelphis domestica]
          Length = 617

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 60/162 (37%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE--------LMPKNI----- 56
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +        L P+ +     
Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELLQIAG 229

Query: 57  --------------------------------------------LLVGPTGVGKTAISRR 72
                                                       LL+GPTG GKT +++ 
Sbjct: 230 ISPHGNALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKSNILLLGPTGSGKTLLAQT 289

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           LA+    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 290 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 331



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 476 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 535

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A++  +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 536 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 578



 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 337 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 393

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 394 VDTTNILFVASGAFN 408


>gi|326468658|gb|EGD92667.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818]
          Length = 604

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 57/169 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q+L                       
Sbjct: 81  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140

Query: 44  -----------------PADLRDELMPK----------------NILLVGPTGVGKTAIS 70
                            P    D+ +P                 NILL+GP+GVGKT ++
Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531



 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294

Query: 290 ----------------------------------SINTDHILFIASGAF 304
                                             +I TD+ILFI SGAF
Sbjct: 295 PERNASRPSAGGSGSSSGTSYNPTSGPSGKAEVYNIRTDNILFIFSGAF 343


>gi|315048507|ref|XP_003173628.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma
           gypseum CBS 118893]
 gi|311341595|gb|EFR00798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma
           gypseum CBS 118893]
          Length = 655

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 57/169 (33%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q+L                       
Sbjct: 130 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEEHLAQRARRESMESH 189

Query: 44  -----------------PADLRDELMPK----------------NILLVGPTGVGKTAIS 70
                            P    D+ +P                 NILL+GP+GVGKT ++
Sbjct: 190 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 249

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 250 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQTER 298



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 475 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 534

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 535 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 580



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 233 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 284

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 285 -LLAAANYDVEQTERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 343

Query: 290 ----------------------------------SINTDHILFIASGAF 304
                                             +I TD+ILFI SGAF
Sbjct: 344 PERNASRPSSGSNSSPGGSSYNSTSSPSGKAEVYNIRTDNILFIFSGAF 392


>gi|239613498|gb|EEQ90485.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ER-3]
          Length = 624

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 54/167 (32%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
            +P+ +   LD++++GQ  AK+ +++A+ N ++R                          
Sbjct: 89  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 148

Query: 41  ---------QQ------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72
                    QQ                  LP D     + K NILL+GP+GVGKT +++ 
Sbjct: 149 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 208

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 209 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 255



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY  L    GI L FT
Sbjct: 445 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 504

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A+ A+++ +     GAR L+T ME +L D  F A     K V++
Sbjct: 505 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 550



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 242 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 300

Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304
                    GS+N                                TD+ILFI SGAF
Sbjct: 301 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 357


>gi|225678960|gb|EEH17244.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb03]
          Length = 518

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G + E + +  LP    + + +  GS + +   F       +  P DL     +PE+ GR
Sbjct: 302 GSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF---NPLDLLTPPDLQTYGFIPELVGR 358

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            P+   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +A  A+++ +
Sbjct: 359 IPITTALSQLTHRLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 418

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V++
Sbjct: 419 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 448



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 43/148 (29%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRR---------------------------------- 40
            LD++++GQ  AK+ +++A+ N ++R                                  
Sbjct: 5   HLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARPEFPGQQRTIHTHA 64

Query: 41  --------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
                   + LP D     + K NILL+GP+GVGKT +++ LAR+   PF   + T  T+
Sbjct: 65  ANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDCTPLTQ 124

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GY+G + +  +  L+  A   V ++ R
Sbjct: 125 AGYIGEDADVCVHRLLAAANYDVAQAER 152



 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + + ++ +  + + SN  + G + VG   +++  ++V+       +  S+  C P     
Sbjct: 73  EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 126

Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                 D+  VHR  +    NY       GI+ LDE DKI      +G  VS EGVQ+ L
Sbjct: 127 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 183

Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293
           L ++EG++V  +           GS+N                                T
Sbjct: 184 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSSSFGGSSFSSPAPPGSSGKAEVYNVRT 243

Query: 294 DHILFIASGAF 304
           D+ILFI SGAF
Sbjct: 244 DNILFIFSGAF 254


>gi|327357376|gb|EGE86233.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ATCC 18188]
          Length = 629

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 54/167 (32%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
            +P+ +   LD++++GQ  AK+ +++A+ N ++R                          
Sbjct: 94  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 153

Query: 41  ---------QQ------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72
                    QQ                  LP D     + K NILL+GP+GVGKT +++ 
Sbjct: 154 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 213

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 214 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 260



 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY  L    GI L FT
Sbjct: 450 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 509

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A+ A+++ +     GAR L+T ME +L D  F A     K V++
Sbjct: 510 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 555



 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 195 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 246

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++  +  
Sbjct: 247 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 305

Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304
                    GS+N                                TD+ILFI SGAF
Sbjct: 306 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 362


>gi|226287963|gb|EEH43476.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb18]
          Length = 622

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G + E + +  LP    + + +  GS + +   F       +  P DL     +PE+ GR
Sbjct: 406 GSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF---NPLDLLTPPDLQTYGFIPELVGR 462

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            P+   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +A  A+++ +
Sbjct: 463 IPITTALSQLTHRLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 522

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V++
Sbjct: 523 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 552



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 53/166 (31%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40
            +P+ +   LD++++GQ  AK+ +++A+ N ++R                          
Sbjct: 91  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVES 150

Query: 41  --------------------------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
                                     + LP D     + K NILL+GP+GVGKT +++ L
Sbjct: 151 HPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTL 210

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           AR+   PF   + T  T+ GY+G + +  +  L+  A   V ++ R
Sbjct: 211 ARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAER 256



 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + + ++ +  + + SN  + G + VG   +++  ++V+       +  S+  C P     
Sbjct: 177 EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 230

Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                 D+  VHR  +    NY       GI+ LDE DKI      +G  VS EGVQ+ L
Sbjct: 231 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 287

Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293
           L ++EG++V  +           GS+N                                T
Sbjct: 288 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSSSFGGSSFSSPAPPGSSGKAEVYNVRT 347

Query: 294 DHILFIASGAF 304
           D+ILFI SGAF
Sbjct: 348 DNILFIFSGAF 358


>gi|62321058|dbj|BAD94134.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana]
          Length = 219

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 11/114 (9%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L +LN+     +LT+ +S L  QYK+L +   + L FTE +   +A
Sbjct: 68  LIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFTEGATRLIA 127

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAEYV 419
             A++ N+     GAR L++++E +L +  F   D + E     K V++D E V
Sbjct: 128 RKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEEAV 176


>gi|289809182|ref|ZP_06539811.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 36

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/35 (68%), Positives = 32/35 (91%)

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L
Sbjct: 1   HILFIASGAFQVAKPSDLIPELQGRLPIRVELQAL 35


>gi|154277104|ref|XP_001539397.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414470|gb|EDN09835.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 617

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 50/154 (32%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                        
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 43  -------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRRLARL 76
                                    LP D     + K NILL+GP+GVGKT +++ LAR+
Sbjct: 148 HPIESQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARV 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 208 LSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 241



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    + + +  GS   +   F       +  P DL     +PE+ GR
Sbjct: 400 GSEEEALYKKHLPFFTPAPLPSGSGSPVEEPTYF---NPLDLLTPVDLQTYGFIPELVGR 456

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L       ILT+  ++L+ QY  L    GI L FT  +   +A  A+++ +
Sbjct: 457 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPARHKIASNAMSMAT 516

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V+I
Sbjct: 517 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 546



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 89/178 (50%), Gaps = 16/178 (8%)

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS-DKEIDIEVADT 172
           V+E +R E  E+  + A++   +++ G    S  R +  ++  + +I+    + I+ +  
Sbjct: 122 VQELQRQE-EEKEELKAQQARRESVEGHPIESQQRTIHTQRTTNDDIARSGPLPIDSSPL 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLI 228
           + + SN  + G + VG   +++  ++V+       +  S+  C P      + +++D  +
Sbjct: 181 TLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYIGEDADVCV 234

Query: 229 D--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
              +   + D  Q    +GI+ LDE DK+ A    +G  VS EGVQ+ LL ++EG++V
Sbjct: 235 HRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKIIEGTTV 290


>gi|3834447|gb|AAC70949.1| ATP-dependent Clp protease ATP-binding subunit Clpx [Streptomyces
           coelicolor A3(2)]
          Length = 139

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 7/73 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD---ELMPKNILLVGP 61
           PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q      A  R+   EL   NILL+GP
Sbjct: 64  PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123

Query: 62  TGVGKTAISRRLA 74
           TG GKT +++ LA
Sbjct: 124 TGSGKTLLAQTLA 136


>gi|225554601|gb|EEH02897.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces
           capsulatus G186AR]
          Length = 621

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    + + +  GS + +   F       +  P DL     +PE+ GR
Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEEPTYF---NPLDLLTPVDLQTYGFIPELVGR 460

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +A  A+++ +
Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V+I
Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 54/159 (33%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ----------------- 42
           + +P+ +   LD++++GQ  AK+ +++A+ N ++      RQ+                 
Sbjct: 87  HLTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVE 146

Query: 43  ------------------------------LPADLRDELMPK-NILLVGPTGVGKTAISR 71
                                         LP D     + K NILL+GP+GVGKT +++
Sbjct: 147 GHPVETEFPGQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAK 206

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            LAR+   PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 207 TLARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245



 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220
           + I+ +  + + SN  + G + VG   +++  ++V+       +  S+  C P      +
Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230

Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
            +++D  +   +   + D  Q    +GI+ LDE DK+ A    +G  VS EGVQ+ LL +
Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288

Query: 279 VEGSSV 284
           +EG++V
Sbjct: 289 IEGTTV 294


>gi|23336808|ref|ZP_00121970.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Bifidobacterium longum DJO10A]
          Length = 202

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           LLPE  GR PV   LK L   D   ILT   + LI QY++L   +G+ L FTE +I A+A
Sbjct: 76  LLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIA 135

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           D+A+   +     GAR L++++ER L+D  F    L + K V++D   V
Sbjct: 136 DIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 179


>gi|295658937|ref|XP_002790028.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb01]
 gi|226282111|gb|EEH37677.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb01]
          Length = 506

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 53/169 (31%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------------- 40
           T   +P+ +   LD++++GQ  AK+ +++A+ N ++R                       
Sbjct: 93  TPRLTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRES 152

Query: 41  -----------------------------QQLPADLRDELMPK-NILLVGPTGVGKTAIS 70
                                        + LP D     + K NILL+GP+GVGKT ++
Sbjct: 153 VESHPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMA 212

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + LAR+   PF   + T  T+ GY+G + +  +  L+  A   V ++ R
Sbjct: 213 KTLARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAER 261



 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + + ++ +  + + SN  + G + VG   +++  ++V+       +  S+  C P     
Sbjct: 182 EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 235

Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                 D+  VHR  +    NY       GI+ LDE DKI      +G  VS EGVQ+ L
Sbjct: 236 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 292

Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293
           L ++EG++V  +           GS+N                                T
Sbjct: 293 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSGSFGGSSFSSPAPPGSSGKAEVYNVRT 352

Query: 294 DHILFIASGAF 304
           D+ILFI SGAF
Sbjct: 353 DNILFIFSGAF 363


>gi|296809019|ref|XP_002844848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma
           otae CBS 113480]
 gi|238844331|gb|EEQ33993.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma
           otae CBS 113480]
          Length = 599

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 12/106 (11%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELM--------PKNILLVGPTGVGKTAISRRL 73
           GQQ   R + ++   R+    LP++ +D L+          NILL+GP+GVGKT +++ L
Sbjct: 142 GQQ---RTIHLSAPRRYYDDNLPSE-QDPLVDSSINMLEKSNILLLGPSGVGKTLMAKTL 197

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           AR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R
Sbjct: 198 ARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 243



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT
Sbjct: 420 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 479

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 480 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 525



 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G + VG   +++  ++V+       +  S+  C P           D+  VHR 
Sbjct: 178 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 229

Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284
            +    NY       GI+ LDE DKI      +G  VS EGVQ+ LL ++EG+++     
Sbjct: 230 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 288

Query: 285 ------------------------STKYG-----SINTDHILFIASGAF 304
                                   S   G     +I TD+ILFI SGAF
Sbjct: 289 PERNASRPSSGGNSSPGGSSYNPTSNSSGKAEVYNIRTDNILFIFSGAF 337


>gi|291402838|ref|XP_002718046.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 2
           [Oryctolagus cuniculus]
          Length = 633

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 14/127 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE---------YVRLH 422
            +A+   +     GAR L+++ME++L +  F   +     V +D E         Y+R  
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRAP 606

Query: 423 IGDFPSE 429
             D P E
Sbjct: 607 AKDSPEE 613



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|297459396|ref|XP_001788707.2| PREDICTED: ClpX caseinolytic peptidase X homolog (E. coli) [Bos
            taurus]
          Length = 1795

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312  LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 1654 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 1713

Query: 372  DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 1714 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 1756



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 55   NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
            NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 1450 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 1509



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245  GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
            GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 1515 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 1571

Query: 291  INTDHILFIASGAFH 305
            ++T +ILF+ASGAF+
Sbjct: 1572 VDTTNILFVASGAFN 1586



 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12   IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
            I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 1334 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 1374


>gi|299483192|gb|ADJ19335.1| putative ATP-dependent protease ATP-binding subunit ClpX [Treponema
           primitia ZAS-2]
          Length = 230

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L+  
Sbjct: 2   EIEKSNVLLIGPTGTGKTLLAKTLAKKLKVPFAIVDATTLTEAGYVGEDVENILLKLIQS 61

Query: 110 A 110
           A
Sbjct: 62  A 62



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 52/156 (33%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G          I
Sbjct: 72  GIVYIDEIDKIARKGENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQEMIRI 131

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                      P DL     
Sbjct: 132 DTTNILFICGGAFVGLDKYIEQRVVQHPMGFGADVKERTGRNLKEMYDALHPDDLIQFGM 191

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           +PE  GR P+ V L+ + + DFR I+T+  + ++ Q
Sbjct: 192 IPEFIGRLPITVSLEEMKREDFRGIITEPRNAIVKQ 227


>gi|325094879|gb|EGC48189.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces
           capsulatus H88]
          Length = 621

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    + + +  GS + +   F       +  P DL     +PE+ GR
Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEELTYF---NPLDLLTPVDLQTYGFIPELVGR 460

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +A  A+++ +
Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V+I
Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 54/158 (34%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++      RQ+                  
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 43  -----------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72
                                        LP D     + K NILL+GP+GVGKT +++ 
Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LAR+   PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245



 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220
           + I+ +  + + SN  + G + VG   +++  ++V+       +  S+  C P      +
Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230

Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
            +++D  +   +   + D  Q    +GI+ LDE DK+ A    +G  VS EGVQ+ LL +
Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288

Query: 279 VEGSSV 284
           +EG++V
Sbjct: 289 IEGTTV 294


>gi|240276945|gb|EER40455.1| ATP-dependent Clp protease ATP-binding subunit [Ajellomyces
           capsulatus H143]
          Length = 621

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319
           G   E + +  LP    + + +  GS + +   F       +  P DL     +PE+ GR
Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEELTYF---NPLDLLTPVDLQTYGFIPELVGR 460

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +A  A+++ +
Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
                GAR L+T ME +L D  F A     K V+I
Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 54/158 (34%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++      RQ+                  
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 43  -----------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72
                                        LP D     + K NILL+GP+GVGKT +++ 
Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LAR+   PF   + T FT+ GY+G + +  +  L+  A
Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245



 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220
           + I+ +  + + SN  + G + VG   +++  ++V+       +  S+  C P      +
Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230

Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
            +++D  +   +   + D  Q    +GI+ LDE DK+ A    +G  VS EGVQ+ LL +
Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288

Query: 279 VEGSSV 284
           +EG++V
Sbjct: 289 IEGTTV 294


>gi|71023509|ref|XP_761984.1| hypothetical protein UM05837.1 [Ustilago maydis 521]
 gi|46101549|gb|EAK86782.1| hypothetical protein UM05837.1 [Ustilago maydis 521]
          Length = 2761

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 55   NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINI 113
            NILL+GP+G GKT + R LA+    PF+ V+ T  T  GYVG +VE II R LV+   ++
Sbjct: 2281 NILLLGPSGSGKTLLLRTLAQALDVPFVHVDATPLTMAGYVGEDVESIIQRLLVEAGWDV 2340

Query: 114  VRESR 118
             R  R
Sbjct: 2341 DRAQR 2345



 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 24/134 (17%)

Query: 309  PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
            P+DL     +PE  GR PV V L  L+  D   ++T+  ++L+ QY  L K  GI L  +
Sbjct: 2539 PSDLEQYGMIPEFIGRVPVSVVLNPLSHQDLIRVMTEPRNSLVDQYTSLFKLNGIELHIS 2598

Query: 364  EDSIDALADVAVNLNSTVGDIG--------------ARRLQTVMERVLEDI---SFSASD 406
              +I+ +   A+   S                    AR L+ +ME VL D    S+ +S 
Sbjct: 2599 RGAIEEVVHRAMGTCSAANSKALVRNSADRGGGGGGARSLRRIMEDVLLDAFYESYGSSS 2658

Query: 407  LQEKTVVIDAEYVR 420
            +  K +++D + VR
Sbjct: 2659 V--KYILVDRQSVR 2670


>gi|159479768|ref|XP_001697962.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas
           reinhardtii]
 gi|158274060|gb|EDO99845.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas
           reinhardtii]
          Length = 561

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LARL   PF   + T  T+ GYVG +VE I+  L+  
Sbjct: 253 ELDKSNMLLLGPTGSGKTLLAKTLARLVNVPFAMADATTLTQAGYVGDDVESILYKLLQA 312

Query: 110 A 110
            
Sbjct: 313 C 313



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 16/79 (20%)

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG----- 289
           V   GIV++DE DKI  R S  G  ++R    EGVQ+ LL ++EG+  +V  K G     
Sbjct: 319 VAQQGIVYIDEIDKIAKR-SAEGFTITRDVSGEGVQQALLKMLEGTVVNVPEKGGRKNPR 377

Query: 290 ----SINTDHILFIASGAF 304
                I+T  ILFI  GAF
Sbjct: 378 GDFIQIDTRDILFIVGGAF 396



 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
           SPRE+V  LD ++IGQ+ AK+ +A+A  N ++R
Sbjct: 100 SPRELVRALDAHVIGQEHAKKVLAVATHNHYKR 132


>gi|74000524|ref|XP_865858.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit ClpX-like, mitochondrial precursor isoform 2
           [Canis familiaris]
          Length = 142

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 1   MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 60

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 61  RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 103


>gi|163814186|ref|ZP_02205578.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759]
 gi|158450635|gb|EDP27630.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759]
          Length = 456

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 21/104 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVG 65
           SP +I   LDR + GQ++AKRA A+ L N    RRQ             N+L  GPTG G
Sbjct: 158 SPAKIYEYLDRRVYGQKEAKRAAAMLLWNHVNGRRQ-------------NVLFAGPTGCG 204

Query: 66  KTAISRRLARLAGAPFIKVE-VTKFTEIGYVGRNVEQIIRDLVD 108
           KT I R+LA+L   P I +   T  T  G+ G      +R+L D
Sbjct: 205 KTEIFRQLAKL--YPNIVIHNATSLTGTGWKGNTK---VRNLFD 243


>gi|327283765|ref|XP_003226611.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Anolis carolinensis]
          Length = 630

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 548

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A++  +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 549 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 591



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339

Query: 109 VAINI 113
              N+
Sbjct: 340 ANYNV 344



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 407 VDTTNILFVASGAFN 421



 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA LR +
Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPATLRQQ 209


>gi|299747228|ref|XP_001836896.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis
           cinerea okayama7#130]
 gi|298407424|gb|EAU84513.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis
           cinerea okayama7#130]
          Length = 508

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 63/166 (37%)

Query: 8   SPREI------VSELDRYIIGQQDAKRAVAIALRNRWRR--------------------- 40
           +PRE+      V  L+++I+GQ+ AK+ +++A+ N + R                     
Sbjct: 61  TPREVKEYRLLVQYLNQFIVGQETAKKVLSVAVYNHYNRVRANLELAMSNEDRLRTDPEI 120

Query: 41  -----------------------QQLPADLRDELMP----KNILLVGPTG---------V 64
                                     P  LR   +P     N+L++GPTG          
Sbjct: 121 EDAPDAHDGVSSATIRPIRNVAKTPPPLSLRPRQLPLFEKSNVLVIGPTGSGLMDESTLA 180

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ LAR+   PF   + T FT+ GYVG +VE  I+ L+  A
Sbjct: 181 GKTLLAKTLARVLDVPFSASDATSFTQAGYVGEDVEMAIQRLLQAA 226



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 76/209 (36%), Gaps = 82/209 (39%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGS----------- 290
           GIV++DE DKI  R S    G   V  EGVQ+ LL ++EGS V+ +              
Sbjct: 236 GIVYIDEVDKIARRTSSGSEGSRDVGGEGVQQALLRMLEGSVVTVQAKGAVHAEPPGKGE 295

Query: 291 --------------------INTDHILFIASGAF--------------HVSRPADLLP-- 314
                               I+T ++LFI SGAF               +   A++LP  
Sbjct: 296 GIGRTGQRAPQVAPQPEVYHIDTSNVLFILSGAFVGLEGIIKQRVAKGSIGFTANILPDS 355

Query: 315 --------------------------------EIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                           E  GR P    L  L   D R ILT+ +
Sbjct: 356 ATPFFTPNRKSGKDSLLEMVETQDLVKYGFIPEFIGRLPSITTLSPLTIPDLRRILTEVK 415

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALA 371
            +L+ QY+ L    G+ + FT  ++D + 
Sbjct: 416 GSLMSQYQALFGYSGVEIRFTSSALDEIC 444


>gi|74000526|ref|XP_865874.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted)
           isoform 3 [Canis familiaris]
          Length = 616

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 475 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 534

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 535 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 577



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 266 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 325

Query: 109 VAINI 113
              N+
Sbjct: 326 ANYNV 330



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 336 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 392

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 393 VDTTNILFVASGAFN 407



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 155 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 195


>gi|7242140|ref|NP_006651.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Homo sapiens]
 gi|14916956|sp|O76031|CLPX_HUMAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|7161189|emb|CAA06933.2| ClpX-like protein [Homo sapiens]
 gi|9665218|emb|CAC01291.1| ClpX protein [Homo sapiens]
 gi|119598121|gb|EAW77715.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
           [Homo sapiens]
 gi|119598122|gb|EAW77716.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
           [Homo sapiens]
 gi|120660350|gb|AAI30374.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
 gi|223460850|gb|AAI36488.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|75070594|sp|Q5R7N3|CLPX_PONAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|55731022|emb|CAH92227.1| hypothetical protein [Pongo abelii]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|114657641|ref|XP_001174382.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial isoform 4 [Pan troglodytes]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|311245295|ref|XP_003121766.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Sus scrofa]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 353 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 406

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 407 TVQVDTTNILFVASGAFN 424



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|109081526|ref|XP_001108768.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial isoform 2 [Macaca mulatta]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|158258064|dbj|BAF85005.1| unnamed protein product [Homo sapiens]
          Length = 633

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|56119122|ref|NP_001007804.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Rattus norvegicus]
 gi|81910247|sp|Q5U2U0|CLPX_RAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|55250758|gb|AAH85867.1| ClpX caseinolytic peptidase X homolog (E. coli) [Rattus norvegicus]
 gi|149041979|gb|EDL95820.1| caseinolytic peptidase X (E.coli) [Rattus norvegicus]
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|297478977|ref|XP_002690567.1| PREDICTED: ClpX caseinolytic protease X homolog [Bos taurus]
 gi|296483742|gb|DAA25857.1| ClpX caseinolytic protease X homolog [Bos taurus]
          Length = 613

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 472 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 531

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 532 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 574



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 263 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 322

Query: 109 VAINI 113
              N+
Sbjct: 323 ANYNV 327



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 333 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 389

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 390 VDTTNILFVASGAFN 404



 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 152 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 192


>gi|74000522|ref|XP_852508.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted)
           isoform 1 [Canis familiaris]
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|297696878|ref|XP_002825604.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Pongo abelii]
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|126277060|ref|XP_001367043.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 1
           [Monodelphis domestica]
          Length = 631

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 490 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 549

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A++  +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 550 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 592



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 281 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 340

Query: 109 VAINI 113
              N+
Sbjct: 341 ANYNV 345



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 351 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 407

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 408 VDTTNILFVASGAFN 422



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 210


>gi|115361628|gb|ABI95884.1| ATP dependent Clp protease ATP-binding subunit ClpX1 [Pennisetum
           glaucum]
          Length = 174

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFP+ V L +LN+     +L + ++ L  Q+K+L     + L FT+ ++  +A
Sbjct: 17  LIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDGALRIIA 76

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
             A++ N+     GAR L+T++E +L D  +   D +     IDA
Sbjct: 77  KKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEKRIDA 116


>gi|296213478|ref|XP_002753288.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Callithrix jacchus]
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 353 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 406

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 407 TVQVDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|149691862|ref|XP_001498252.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX-like, mitochondrial isoform 1 [Equus
           caballus]
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|148694140|gb|EDL26087.1| caseinolytic peptidase X (E.coli) [Mus musculus]
          Length = 634

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343

Query: 109 VAINI 113
              N+
Sbjct: 344 ANYNV 348



 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410

Query: 291 INTDHILFIASGAFH 305
           ++T ++LF+ASGAF+
Sbjct: 411 VDTTNVLFVASGAFN 425



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213


>gi|332235701|ref|XP_003267043.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Nomascus leucogenys]
          Length = 580

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 439 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 498

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 499 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 541



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 230 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 289

Query: 109 VAINI 113
              N+
Sbjct: 290 ANYNV 294



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 300 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 353

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 354 TVQVDTTNILFVASGAFN 371


>gi|113205071|ref|NP_035932.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial isoform 1 [Mus musculus]
          Length = 634

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343

Query: 109 VAINI 113
              N+
Sbjct: 344 ANYNV 348



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410

Query: 291 INTDHILFIASGAFH 305
           ++T ++LF+ASGAF+
Sbjct: 411 VDTTNVLFVASGAFN 425



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213


>gi|14916542|sp|Q9JHS4|CLPX_MOUSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|9663733|emb|CAC01232.1| ClpX protein [Mus musculus]
          Length = 634

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595



 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343

Query: 109 VAINI 113
              N+
Sbjct: 344 ANYNV 348



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410

Query: 291 INTDHILFIASGAFH 305
           ++T ++LF+ASGAF+
Sbjct: 411 VDTTNVLFVASGAFN 425



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213


>gi|114657643|ref|XP_001174375.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 599

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 458 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 517

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 518 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 560



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 249 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 308

Query: 109 VAINI 113
              N+
Sbjct: 309 ANYNV 313



 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 319 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 375

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 376 VDTTNILFVASGAFN 390



 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 138 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 178


>gi|50545888|ref|XP_500482.1| YALI0B04158p [Yarrowia lipolytica]
 gi|49646348|emb|CAG82709.1| YALI0B04158p [Yarrowia lipolytica]
          Length = 576

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 46/151 (30%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------------- 49
           + +PR+++++L+++I+GQ  +K+  A+A+ N + R  L  D R                 
Sbjct: 98  DMTPRKLLAKLNQFIVGQDRSKKVFAVAIYNHYLRSGLLIDERQWSDYMKRINAAKGKIS 157

Query: 50  ----------------------------ELMP--KNILLVGPTGVGKTAISRRLARLAGA 79
                                       +++P   N+L+VGP+G GKT +++ LA     
Sbjct: 158 DRWENTDEPQSTDYINVLKEEYDEETESQVIPDKANLLVVGPSGSGKTMMAKTLASFLSL 217

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P    + T  T+ GYVG +V+  ++ L  V 
Sbjct: 218 PISISDCTALTQAGYVGDDVQSCVQQLYQVC 248



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P  V L  L + D   IL + ++ L+ Q++   K+ G  + FT+ ++  +A
Sbjct: 403 LIPELLGRAPTIVKLNHLTEEDLLRILIEPKNALVEQFRVKFKSFGTRIVFTKPALRIIA 462

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             A++       +GAR L  VME++  + ++       K V++D+  +R
Sbjct: 463 KTALSEG-----LGARGLHAVMEKICLNANYECPGTSTKYVLVDSSVLR 506



 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 23/83 (27%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------STKYG----- 289
           +GI+ LDE DK+  R+ G+G  VS EGVQ+ LL ++EG+ V          T  G     
Sbjct: 257 HGIIVLDEIDKLAKRE-GSGRDVSGEGVQQSLLKMLEGTLVQISGTPGRAQTTAGLPGGG 315

Query: 290 --------SINTDHILFIASGAF 304
                   +INT +ILFI  GAF
Sbjct: 316 SAMPKESVTINTQNILFILMGAF 338


>gi|281347326|gb|EFB22910.1| hypothetical protein PANDA_002175 [Ailuropoda melanoleuca]
          Length = 607

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 466 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 525

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 526 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 568



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 257 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 316

Query: 109 VAINI 113
              N+
Sbjct: 317 ANYNV 321



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 327 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 383

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 384 VDTTNILFVASGAFN 398



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 146 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 186


>gi|167468556|ref|ZP_02333260.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           FV-1]
          Length = 54

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +GARRL TV+ER++EDIS+ AS+   +++ IDAEYV  H+ +  ++ D+  FIL
Sbjct: 1   MGARRLHTVLERLMEDISYDASESSGQSITIDAEYVGKHLDELVADEDLSRFIL 54


>gi|124006085|ref|ZP_01690921.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
 gi|123988262|gb|EAY27915.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
          Length = 370

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRY-IIGQQDAKRAVAI-ALRNRWRRQQLPAD--LRDELMPK-NILLVGPT 62
           +P++I +++  +  IGQ  A +A+++ A R+  R + +  D   +DEL PK N LLVGPT
Sbjct: 19  TPQDIYNKVRLHGYIGQHKAVQAISLMACRHIRRLKNVFVDKIPKDELPPKDNYLLVGPT 78

Query: 63  GVGKTA-ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT  +     ++   P   +++T ++E GY+G++V  I+  LV+ A
Sbjct: 79  GSGKTYLVDIVFNKILHLPTTVIDITSYSETGYIGQDVVSILTRLVNAA 127



 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 66/228 (28%)

Query: 245 GIVFLDEFDKI-------VARDSGNGIGVSREGVQRDLLPLVEGSSV-------STKYG- 289
           G+V LDEFDK+       V    G    VS  GVQ++LL ++EG+ V        + Y  
Sbjct: 137 GVVCLDEFDKLSTSKNSAVFAGQGTTKDVSGFGVQKELLKILEGAEVDVPEELSHSAYAP 196

Query: 290 --SINTDHILFIASGAFH----------------------------------------VS 307
             +++T+ I F+A GAF                                           
Sbjct: 197 RDTMSTEFISFVALGAFSGITKTINHHNQQIGFGSKTETAYTDAIAYQLNENDLNKTVYF 256

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   ++PE+ GRF   V    L+K+  + IL     N + +Y++ +      L   +D +
Sbjct: 257 QEYGIMPELIGRFSRIVPFHPLDKAHLQDILV---KNTLKRYEKELALVKSSLKIDDDVL 313

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414
           + + D A+ + +     GAR L+T +   +ED  F   S L+++   I
Sbjct: 314 EKIVDQAIEMET-----GARGLRTSLFGYIEDACFELYSHLEQQNTKI 356


>gi|301756913|ref|XP_002914296.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Ailuropoda melanoleuca]
          Length = 633

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 551

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 109 VAINI 113
              N+
Sbjct: 343 ANYNV 347



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|66511659|ref|XP_394615.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Apis mellifera]
          Length = 586

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +L+K+    ILT+ ++ +I QY+ L   + + L FT ++++A+A
Sbjct: 458 MIPEFVGRFPVLVPFHTLDKNMLVRILTEPQNAMIPQYQMLFSMDKVDLTFTSEALNAIA 517

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+ +ME +L +  F
Sbjct: 518 SLAMEKKT-----GARGLRAIMESLLLEPMF 543



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 249 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 308

Query: 110 AINIV 114
           A  +V
Sbjct: 309 ANYVV 313



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 372

Query: 291 ----INTDHILFIASGAF 304
               I+T +ILF+ASGA+
Sbjct: 373 DTLQIDTTNILFVASGAY 390


>gi|315178884|gb|ADT85798.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
          11218]
          Length = 46

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL 43
          +PREIV EL+R+IIGQ +AKRAVAIALRNRW    L
Sbjct: 5  TPREIVHELNRHIIGQDNAKRAVAIALRNRWASHAL 40


>gi|169597035|ref|XP_001791941.1| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15]
 gi|160707432|gb|EAT90945.2| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15]
          Length = 527

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   N++++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  L+  
Sbjct: 185 QLEKSNVMILGPTGVGKTLMCKTLAKTLGVPIAMSDCTTFTQAGYIGDDVESCVARLLSA 244

Query: 110 A 110
           A
Sbjct: 245 A 245



 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 41/101 (40%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----------------STKY 288
           GI+ LDE DKI       G  V  EGVQ+ LL ++EG++V                ST  
Sbjct: 255 GIIVLDEIDKIAGAKIAYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSAGKGPGGSTGR 314

Query: 289 GS-------------------------INTDHILFIASGAF 304
           GS                         + TD+ILFI +GAF
Sbjct: 315 GSPYDGPGSGESRSPPGPPGGKGEVFNVRTDNILFICTGAF 355


>gi|258571573|ref|XP_002544590.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus
           reesii 1704]
 gi|237904860|gb|EEP79261.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus
           reesii 1704]
          Length = 524

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LL+GP+GVGKT +++ LAR+   PF   + T FT+ GY+G + +  ++ L+  A   V
Sbjct: 102 NVLLLGPSGVGKTLMAKTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVQRLLAAANYDV 161

Query: 115 RESRR 119
            ++ R
Sbjct: 162 AQAER 166



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L+KS    ILT+  ++L+ QY  L    GI L FT
Sbjct: 353 PPDLQSYGFIPELVGRIPITTALSPLSKSLLLRILTEPRNSLVNQYTALFALSGIELCFT 412

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
             ++  +A  A  +++     GAR L+T ME +L D  F A     K V++
Sbjct: 413 TSALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 458



 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 39/99 (39%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY----------GSIN-- 292
           GI+ LDE DKI      +G  VS EGVQ+ LL ++EG++V  +           GS N  
Sbjct: 167 GIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNAPRQGGSSNNF 226

Query: 293 ---------------------------TDHILFIASGAF 304
                                      TD+ILFI SGAF
Sbjct: 227 PGSGLGGSSFSSSSPGSPGKSEVYNVRTDNILFIFSGAF 265


>gi|156358407|ref|XP_001624511.1| predicted protein [Nematostella vectensis]
 gi|156211296|gb|EDO32411.1| predicted protein [Nematostella vectensis]
          Length = 506

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ +AR    PF   + T  T+ GYVG ++E +I  L+  A   V
Sbjct: 191 NILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYVGEDIESVIAKLLQEAGGNV 250

Query: 115 RESRR 119
            ++++
Sbjct: 251 EKAQQ 255



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + L+ QY+ L   + + L    D++  +A
Sbjct: 395 MIPEFIGRLPVVVSLHSLDEDTLVKILTEPRNVLVPQYQALFAMDKVDLQLESDALQLIA 454

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             A+   +     GAR L+ ++E +L D  F A      TV I  + VR
Sbjct: 455 QQALEKKT-----GARGLRAILENLLLDPMFDAPGSDIVTVRITEDVVR 498



 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 11/72 (15%)

Query: 245 GIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTK----------YGSINT 293
           GIVFLDE DKI A    + +  V  EGVQ+ LL ++EG+ V+              +++T
Sbjct: 256 GIVFLDEVDKIGAVPGVHNLRDVGGEGVQQGLLKILEGTVVNVPERNSRKMRGDTVAVDT 315

Query: 294 DHILFIASGAFH 305
            +ILF+ASGAF+
Sbjct: 316 SNILFVASGAFN 327


>gi|320586123|gb|EFW98802.1| ATPase AAA-2 [Grosmannia clavigera kw1407]
          Length = 586

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L+++   PF   + + FT+ GYVG++VE  I  L+
Sbjct: 201 NLLLIGPTGVGKTYILETLSKVLNIPFAICDCSSFTQAGYVGKDVETCIERLL 253



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           PADL     +PE+ GR      L  L+  +   ILT+   +LI QY  L +T    L FT
Sbjct: 428 PADLQAFGFIPELIGRLHNICALTPLSVDELYRILTEPRHSLIAQYTALFETYPSRLYFT 487

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           + ++ A+A+ A  +     D GAR L+  +ERVL +  F A
Sbjct: 488 QRALHAIAERASKV-----DTGARGLKMELERVLAEPMFDA 523



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 36/97 (37%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG----------------SSVSTK 287
           +GIV LDEFDKI  ++  N   +  EGVQ+ LL LVEG                S +++ 
Sbjct: 265 FGIVILDEFDKIARKEEANNRDIGGEGVQQALLKLVEGTKVTVSIKDNHSSRSASPITST 324

Query: 288 YGS--------------------INTDHILFIASGAF 304
           YGS                    I+T  ILF+ SGAF
Sbjct: 325 YGSPNASLPPQGSSASGKIEQYTIDTSRILFVFSGAF 361


>gi|167465317|ref|ZP_02330406.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 70

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 45/70 (64%)

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           + +A +AV +N +  +IGARR   ++E++LED+SF A +L  +T++I  EYVR  + +  
Sbjct: 1   EEIARIAVEVNQSTENIGARRSHRILEKLLEDLSFEAPELTLETMLITPEYVREKLSNIV 60

Query: 428 SETDMYHFIL 437
              D+  +IL
Sbjct: 61  ENRDLSQYIL 70


>gi|198429767|ref|XP_002119878.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX-like, mitochondrial [Ciona intestinalis]
          Length = 393

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 46  DLRDELMP-----KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           +L DE  P      NI+++GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E
Sbjct: 26  NLEDESSPITLEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIE 85

Query: 101 QIIRDLV 107
            +I  L+
Sbjct: 86  SVIAKLL 92



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR P+ V L SL+      ILT+  + ++ Q++ L   +   L  T  ++ A+A
Sbjct: 246 MIPEFVGRLPITVPLHSLSNEHLTKILTEPRNAVVPQFEALFNMDKSDLAITPSALRAIA 305

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           D+A+   +     GAR L+++ME+++ D  +         V ID + VR
Sbjct: 306 DLALERKT-----GARGLRSIMEQLMLDPMYDVPGSDIIGVCIDDDVVR 349



 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL ++EG+ V+    +       
Sbjct: 105 GIVFLDEVDKISSVPGIHQLRDVGG------EGVQQGLLKMLEGTVVNVPERNSRKLRGD 158

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 159 SVVVDTTNILFVASGAFN 176


>gi|224062774|ref|XP_002200002.1| PREDICTED: ClpX caseinolytic protease X homolog [Taeniopygia
           guttata]
          Length = 630

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339

Query: 109 VAINI 113
              NI
Sbjct: 340 ANYNI 344



 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 548

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A++  +     GAR L+++ME++L +  F   +     V +D + V
Sbjct: 549 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 591



 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 407 VDTTNILFVASGAFN 421


>gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 617

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL +VA
Sbjct: 361 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-VRDLFNVA 417


>gi|148223569|ref|NP_001090028.1| ClpX caseinolytic peptidase X homolog [Xenopus laevis]
 gi|66911151|gb|AAH97522.1| MGC114642 protein [Xenopus laevis]
          Length = 624

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 274 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 333

Query: 109 VAINI 113
              N+
Sbjct: 334 ANYNV 338



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L  +ED++ A+A
Sbjct: 483 MIPEFVGRLPVVVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSISEDALRAIA 542

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 543 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVV 585



 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 344 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 400

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF++SGAF+
Sbjct: 401 VDTTNILFVSSGAFN 415



 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 6/56 (10%)

Query: 1   MKLTFN----FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           MKL F       P++I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 148 MKLAFQQKPPPPPKKIFNYLDKYVVGQAFAKKVLSVAVYNHYKRIYNNIPANLRQQ 203


>gi|323650020|gb|ADX97096.1| mitochondrial ATP-dependent clp protease ATP-binding subunit
           clpx-like [Perca flavescens]
          Length = 194

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NI+L+GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 40  KLEKSNIILLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 99

Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136
           A   V ++++     DEV +  S+    ++ D
Sbjct: 100 ANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 131



 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 110 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTVVNVPEKNSRKLRGE 163

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 164 TLQVDTTNILFVASGAFN 181


>gi|114657645|ref|XP_001174360.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1 [Pan
           troglodytes]
          Length = 553

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136
           A   V ++++     DEV +  S+    ++ D
Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374



 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|298204408|emb|CBI16888.3| unnamed protein product [Vitis vinifera]
          Length = 471

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL +VA
Sbjct: 215 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-VRDLFNVA 271


>gi|241558211|ref|XP_002400180.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
 gi|215499741|gb|EEC09235.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
          Length = 358

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   SL++     ILT+  + L+ QY+ L   + + L F +D++ A+A
Sbjct: 223 MIPEFVGRFPVLVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFDQDALRAIA 282

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE-----YVRLHIGDF 426
            +A+   +     GAR L+ +ME +L +  F        +V I  E        L+I   
Sbjct: 283 RLAMERKT-----GARGLRAIMETILLEPMFEIPGSDVVSVHISHECAMGKCAPLYIKGR 337

Query: 427 PSETDMY 433
           P + +MY
Sbjct: 338 PGDREMY 344


>gi|169841963|ref|ZP_02875068.1| ATP-dependent protease ATP-binding subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 86

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LLVGPTG GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  
Sbjct: 2   ELQKSNVLLVGPTGSGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKA 61

Query: 110 A 110
           A
Sbjct: 62  A 62


>gi|71895647|ref|NP_001025723.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Gallus gallus]
 gi|53128038|emb|CAG31266.1| hypothetical protein RCJMB04_4h24 [Gallus gallus]
          Length = 630

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 548

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D + V
Sbjct: 549 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 591



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339

Query: 109 VAINI 113
              N+
Sbjct: 340 ANYNV 344



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 407 VDTTNILFVASGAFN 421



 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQ 209


>gi|12053339|emb|CAB66856.1| hypothetical protein [Homo sapiens]
          Length = 533

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136
           A   V ++++     DEV +  S+    ++ D
Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|312210457|emb|CBX90544.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VEQ +  L   +
Sbjct: 194 NVLILGPTGVGKTLMCKTLAKTLGIPISMSDCTTFTQAGYIGDDVEQCVARLFSAS 249



 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 39/99 (39%)

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------STKYG------ 289
           GI+ LDE DKI       G  V  EGVQ+ LL ++EG++V         ST+ G      
Sbjct: 259 GIIVLDEIDKIAGAKLSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSSTRPGGASGRG 318

Query: 290 ------------------------SINTDHILFIASGAF 304
                                   +I TD+ILFI +GAF
Sbjct: 319 SPVDMYQSPTPPPPPPGGAKGEVFNIRTDNILFICTGAF 357



 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           HV +PADL     +PE+ GR P    + +L++     +LT+ + +L+ Q +       + 
Sbjct: 435 HV-QPADLQKYGMIPELIGRIPTVCAVSALDEGALVRVLTEPKDSLVRQEEHKAHLRNME 493

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           L FT  ++  +A  A  + +     GAR L+ V++++L    +       K +++
Sbjct: 494 LRFTTGALREIARKASKMGT-----GARGLRHVVDQLLLQAKYETPGSSVKHILV 543


>gi|7801087|emb|CAB91482.1| related to MCX1 protein [Neurospora crassa]
          Length = 563

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 55/157 (35%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--------------------RQQLPA 45
            F PR++   +D Y++GQ  AK+ +   + N ++                    RQ+   
Sbjct: 65  QFYPRDLKRRVDDYVVGQDRAKKTICSVIFNHYQNIRRRQHHEIQDQRQREKLQRQRYAR 124

Query: 46  DLRD------------ELMP-----------------------KNILLVGPTGVGKTAIS 70
           D RD            ++ P                        N+LL+GPTGVGKT I 
Sbjct: 125 DHRDLQDREGYSGSSRDIHPTPSVDDFYIPEDTNAPQRVKIDKSNLLLIGPTGVGKTYIL 184

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 185 ETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLL 221



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +GIV LDEFDKI  R++ NG  V  EGVQ+ LL LVEG+ V+
Sbjct: 233 HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 274



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           ++ PADL     +PE+ GR      L  L+  +   ILT+  ++L+ QY  L +T    L
Sbjct: 404 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 463

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            FT  ++ A+A+ A        + GAR L+  MERVL +  + A
Sbjct: 464 YFTRKALYAIAERAAK-----NETGARGLKMEMERVLAEPMYDA 502


>gi|114657639|ref|XP_001174378.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 533

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342

Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136
           A   V ++++     DEV +  S+    ++ D
Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 410 VDTTNILFVASGAFN 424



 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212


>gi|326926841|ref|XP_003209605.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Meleagris gallopavo]
          Length = 609

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+ D
Sbjct: 259 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 318

Query: 109 VAINI 113
              N+
Sbjct: 319 ANYNV 323



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TED++ A+A
Sbjct: 468 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 527

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D + V
Sbjct: 528 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 570



 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 329 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 385

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 386 VDTTNILFVASGAFN 400



 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +
Sbjct: 148 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQ 188


>gi|262198639|ref|YP_003269848.1| ATPase AAA [Haliangium ochraceum DSM 14365]
 gi|262081986|gb|ACY17955.1| ATPase AAA-2 domain protein [Haliangium ochraceum DSM 14365]
          Length = 384

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 8   SPREIVSELDRYII-GQQDAKRAVAI-ALRNRWRRQQLPADLRDE-LMPK--NILLVGPT 62
           SPRE+   L+     GQ  A+RA+ + A R+  R +++  D  D  L+P+  N L+VGPT
Sbjct: 26  SPREMFQRLESLGYRGQPTARRALCLMAYRHVRRIKRIYLDGGDRGLLPRKANYLMVGPT 85

Query: 63  GVGKTAISRRLA-RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +  +L  ++   P + V++T ++E GYVG++   I+  L+  A
Sbjct: 86  GCGKTFLVEQLFDKILKLPTVLVDITTYSETGYVGQDPSSILTRLLHAA 134



 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 17/86 (19%)

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSRE----GVQRDLLPLVEGSSV---- 284
           D   ++ + GIV LDEFDKI +  +     G G +++    GVQR+LL ++E S V    
Sbjct: 135 DDNPLMASIGIVCLDEFDKIASGQNNAVFAGAGTTKDVTGMGVQRELLKMLESSEVVVPL 194

Query: 285 ---STKYGS---INTDHILFIASGAF 304
               + YG    ++T  I F+A+GAF
Sbjct: 195 ELTHSSYGDHVVMSTADIAFVAAGAF 220


>gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa]
 gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           + + L+     Q+L A L     P+ +LLVGP G GKT ++R +A  AG PF  V  ++F
Sbjct: 283 IVLCLQGAMNYQKLGAKL-----PRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEF 337

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VGR   + IRDL + A
Sbjct: 338 VEL-FVGRGAAR-IRDLFNAA 356


>gi|46116944|ref|XP_384490.1| hypothetical protein FG04314.1 [Gibberella zeae PH-1]
          Length = 604

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           ++ PADL     +PE+ GR      L  L+K D   ILT+  ++L+ QY  L +T    L
Sbjct: 446 LTTPADLQSFGFIPELIGRLHNICALSPLSKEDLFRILTEPRNSLVAQYTALFETYPSRL 505

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            FTE S+ A+A+ A        + GAR L+  MERVL +  F A
Sbjct: 506 FFTEKSLYAIAERAA-----ASETGARGLKMEMERVLAEPMFDA 544



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 226 NLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLL 278



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           YGIV LDEFDKI  R++  G  V  EGVQ+ LL LVEG+ V+
Sbjct: 290 YGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVT 331


>gi|321470305|gb|EFX81282.1| hypothetical protein DAPPUDRAFT_102627 [Daphnia pulex]
          Length = 375

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG N+E +I  L+ D   N+
Sbjct: 99  NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGENIESVIAKLLQDANYNV 158



 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 164 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNAPRKLRG 217

Query: 291 ----INTDHILFIASGAF 304
               ++T +ILF+ASGA+
Sbjct: 218 ETIQVDTTNILFVASGAY 235


>gi|113931262|ref|NP_001039078.1| ClpX caseinolytic peptidase X homolog [Xenopus (Silurana)
           tropicalis]
 gi|89273895|emb|CAJ83484.1| ClpX caseinolytic protease X homolog [Xenopus (Silurana)
           tropicalis]
          Length = 377

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 27  KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 86

Query: 110 A 110
           A
Sbjct: 87  A 87



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L   ED++ A+A
Sbjct: 236 MIPEFVGRLPVVVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSINEDALRAIA 295

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +A+   +     GAR L+++ME++L +  F   +     V +D E V
Sbjct: 296 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVV 338



 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI +       RD G       EGVQ+ LL L+EG+ V+    +       
Sbjct: 97  GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 150

Query: 291 ---INTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 151 TVQVDTTNILFVASGAFN 168


>gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 636

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + IRDL  VA
Sbjct: 380 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFKVA 436


>gi|198412228|ref|XP_002121704.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX, partial [Ciona intestinalis]
          Length = 140

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 46  DLRDELMP-----KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           +L DE  P      NI+++GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E
Sbjct: 32  NLEDETSPITLEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIE 91

Query: 101 QIIRDLVDVAINIVRESRR-----DEVREQASINAEERILD 136
            +I  L+  A   V  + +     DEV + +S+    ++ D
Sbjct: 92  SVIAKLLQDAGGHVERAEQGIVFLDEVDKISSVPGIHQLRD 132


>gi|291221693|ref|XP_002730831.1| PREDICTED: ClpX caseinolytic protease X homolog [Saccoglossus
           kowalevskii]
          Length = 608

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+
Sbjct: 269 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLL 321



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V L SL++     ILT+  + L+ Q+  L+  +   L FT  ++ A+A
Sbjct: 476 MIPEFVGRFPVAVSLTSLDEEMLVRILTEPRNALVPQFHALLGMDKAELTFTPGALKAIA 535

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+ ++E VL D  F
Sbjct: 536 QMALERKT-----GARGLRAIVEGVLLDAMF 561


>gi|307203708|gb|EFN82674.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Harpegnathos saltator]
          Length = 589

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 252 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 311

Query: 110 AINIV 114
           A  +V
Sbjct: 312 ANYVV 316



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +L++     ILT+ ++ ++ Q++ L   + + L F  ++++A+A
Sbjct: 461 MIPEFVGRFPVLVPFHTLDRDMLVRILTEPKNAIVPQFQMLFSMDKVELTFDINALNAIA 520

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +A+   +     GAR L+ +ME +L D  F        +V I  + V+ H
Sbjct: 521 SLAMERKT-----GARGLRAIMESLLLDPMFEVPGSDVMSVHITEQCVKGH 566



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 322 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 375

Query: 291 ----INTDHILFIASGAF 304
               ++T +ILF+ASGA+
Sbjct: 376 ETLQVDTTNILFVASGAY 393


>gi|196250174|ref|ZP_03148868.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
 gi|196210358|gb|EDY05123.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
          Length = 159

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 8/108 (7%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT  ++ ++ QYK++++ +G+ L+F E ++  +A
Sbjct: 32  LIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREIA 91

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416
             A+   +     GAR L++++E ++ D+ F   S  D+Q+  + +D 
Sbjct: 92  KKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITVDT 134


>gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Acromyrmex echinatior]
          Length = 592

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A  +V
Sbjct: 259 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 318



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +L++     ILT+ ++ +I QY+ L   + + L F   +++A+A
Sbjct: 463 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIIPQYQMLFSMDKVELTFDTHALNAIA 522

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+ +ME +L +  F
Sbjct: 523 SLAMERKT-----GARGLRAIMESLLLEPMF 548



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 324 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 377

Query: 287 KYGSINTDHILFIASGAF 304
           +   ++T +ILF+ASGA+
Sbjct: 378 EMLQVDTTNILFVASGAY 395


>gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta]
          Length = 588

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A  +V
Sbjct: 255 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 314



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +L++     ILT+ ++ ++ QY+ L   + + L F   +++A+A
Sbjct: 459 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVHALNAIA 518

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+ +ME +L +  F
Sbjct: 519 SLAMERKT-----GARGLRAIMESLLLEPMF 544



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 320 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 373

Query: 287 KYGSINTDHILFIASGAF 304
           +   ++T +ILF+ASGA+
Sbjct: 374 EMLQVDTTNILFVASGAY 391


>gi|299473631|emb|CBN78025.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 622

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           N+++VGPTG GKT +++ LA+L   P +  + T  T+ GYVG +VE I+  L
Sbjct: 315 NVMIVGPTGSGKTLLAKTLAKLVDVPLVIADATCLTQAGYVGEDVESILHKL 366



 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 44/112 (39%)

Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVS----------- 285
           GIV+LDE DKI        + RD      VS EGVQ+ LL ++EG+ V+           
Sbjct: 380 GIVYLDEIDKISRKMENVSITRD------VSGEGVQQALLKILEGAIVNVPKDGGRKNPR 433

Query: 286 TKYGSINTDHILFIASGA------------------FHVSRPADLL-PEIQG 318
           + +  ++T +ILFI  GA                  F  + PADL  PE+QG
Sbjct: 434 SDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPEMQG 485


>gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana]
 gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana]
 gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana]
          Length = 622

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + IRDL + A
Sbjct: 366 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 422


>gi|307180270|gb|EFN68303.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Camponotus floridanus]
          Length = 593

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A  +V
Sbjct: 260 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 319



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   +L++     ILT+ ++ ++ QY+ L   + + L F  D+++A+A
Sbjct: 464 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVDALNAIA 523

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            +A+   +     GAR L+ +ME +L +  F
Sbjct: 524 SLAMERKT-----GARGLRAIMESLLLEPMF 549



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 325 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 378

Query: 287 KYGSINTDHILFIASGAF 304
           +   ++T +ILF+ASGA+
Sbjct: 379 EMLQVDTTNILFVASGAY 396


>gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
          Length = 622

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + IRDL + A
Sbjct: 366 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 422


>gi|213621494|ref|ZP_03374277.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 67

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 31/50 (62%)

Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
          EL   NILL GPTG GKT ++  LARL   PF   + T  TE GYVG +V
Sbjct: 18 ELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 67


>gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 616

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + IRDL + A
Sbjct: 360 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 416


>gi|326680427|ref|XP_002667004.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Danio rerio]
          Length = 618

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NI+L+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 272 KLEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 331

Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136
           A   V ++++     DEV +  S+    ++ D
Sbjct: 332 ANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 363



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 14/120 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ T D++ A+A
Sbjct: 482 MIPEFVGRLPVVVPLHSLDEEMLVQILTEPRNAVVPQYQALFSMDKCELNVTSDALRAIA 541

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-------ASDLQEKTVVIDAE--YVRLH 422
            +A+   +     GAR L+++ME++L +  F        A +L +  V    E  Y+R H
Sbjct: 542 RLALERKT-----GARGLRSIMEKLLLEPMFEVPQSDIIAVELNKDVVQGKCEPRYIRTH 596



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 342 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 398

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 399 VDTTNILFVASGAFN 413


>gi|302900533|ref|XP_003048281.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729214|gb|EEU42568.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 603

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           ++ PADL     +PE+ GR      L  L+K D   ILT+ +++L+ QY  L +T    L
Sbjct: 446 LTTPADLQSFGFIPELIGRLHNICALSPLSKDDLFRILTEPKNSLVAQYTALFETYPSRL 505

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            FTE ++ A+A+ A        + GAR L+  MERVL +  F A
Sbjct: 506 FFTEKALYAIAERAA-----ASETGARGLKMEMERVLAEPMFDA 544



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 226 NLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLL 278



 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +GIV LDEFDKI  R++  G  V  EGVQ+ LL LVEG+ V+
Sbjct: 290 HGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVT 331


>gi|1616640|gb|AAB16818.1| unknown [Azospirillum brasilense]
          Length = 186

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+F++D++  ++
Sbjct: 61  LIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTIS 120

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             A+   +     GAR L+++ME +L D  F    L   ++++++ E V
Sbjct: 121 HKAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 164


>gi|71901994|ref|ZP_00684041.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Ann-1]
 gi|71728239|gb|EAO30423.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Ann-1]
          Length = 161

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D++ A+A
Sbjct: 37  LIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVA 96

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+T++E VL D  +
Sbjct: 97  RKALKRKT-----GARGLRTIVELVLLDTMY 122


>gi|22532109|gb|AAM97841.1|AF447727_3 ATP-dependent protease Clp ATP-binding subunit ClpX [Pseudomonas
           syringae]
          Length = 191

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 10/107 (9%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++ ++A
Sbjct: 65  LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 124

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
             A+   +     GAR L++++E VL D  +   S SD+ +  VVID
Sbjct: 125 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 164


>gi|223648098|gb|ACN10807.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Salmo salar]
          Length = 627

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NI+L+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  
Sbjct: 276 KLEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 335

Query: 110 A 110
           A
Sbjct: 336 A 336



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 14/118 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ T +++ A+A
Sbjct: 485 MIPEFVGRLPVVVPLHSLDEETLVRILTEPRNAVIPQYQALFNMDKCELNVTTEALRAIA 544

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQE----KTVVI---DAEYVR 420
            +A+   +     GAR L+++ME++L +  F    SD+      K VV+   + +YVR
Sbjct: 545 RLALERKT-----GARGLRSIMEKLLLEPMFEVPCSDIMAVELTKDVVLGKSEPQYVR 597



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 346 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 402

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 403 VDTTNILFVASGAFN 417


>gi|310798046|gb|EFQ32939.1| ATP-dependent Clp protease [Glomerella graminicola M1.001]
          Length = 585

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           ++ PA  + ++   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE
Sbjct: 193 EEPPAPPQVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVE 252

Query: 101 QIIRDLV 107
             +  L+
Sbjct: 253 TCVERLL 259



 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 40/197 (20%)

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE--------GVQRDL---- 275
           +D  T++  +I  V     V LD+   +V R S   +G   E        G Q DL    
Sbjct: 349 VDQYTINTTNILFVFCGAFVGLDKV--VVRRVSKPSMGFGSELRGKQSLSGNQHDLPRHL 406

Query: 276 ---LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLK 327
              LP V   + ++ Y  ++             ++ P DL     +PE+ GR      L 
Sbjct: 407 FSHLPHVSTDASASSYTPLD-------------LTTPVDLQTFGFIPELIGRVHNICALS 453

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L+ SD   ILT+  ++L+ QY  L +T    L FT+ ++ A+A+ AV       + GAR
Sbjct: 454 PLSLSDLYRILTEPRNSLVAQYTALFETYPSRLHFTKKALYAIAERAVK-----AETGAR 508

Query: 388 RLQTVMERVLEDISFSA 404
            L+  MERVL +  F A
Sbjct: 509 GLKMEMERVLAEPIFDA 525



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +GI+ LDEFDK+  R+S NG  V  EGVQ+ LL LVEGS V+
Sbjct: 271 HGIIVLDEFDKLAKRESMNGRDVGGEGVQQALLKLVEGSKVT 312


>gi|153871194|ref|ZP_02000428.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
 gi|152072343|gb|EDN69575.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
          Length = 207

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR PV   L+ L +     ILT+ ++ L  QYK L + EG  L++  +++ A+A
Sbjct: 81  LIPELVGRLPVTTTLEELEEEQLVQILTEPKNALTKQYKRLFEMEGTELEWRPEALKAVA 140

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
             AV  N+     GAR L++++E+VL D  +    +   T V+  E V
Sbjct: 141 RKAVTRNT-----GARGLRSILEQVLLDTMYELPSMNNATKVVVDETV 183


>gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
 gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
          Length = 651

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A   V   L N  R +++ A L     P+  LLVGP G GKT +++ +A  
Sbjct: 183 VAGQEEAKEALKEVVDFLENPKRYEEIGAKL-----PRGALLVGPPGTGKTLMAKAVAGE 237

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 238 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 269


>gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa]
          Length = 635

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + IR+L  VA
Sbjct: 379 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEM-FVGRGAAR-IRELFSVA 435


>gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA]
 gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei]
          Length = 849

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++NR R Q++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 171 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 224

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 225 YVGQGAKRI 233


>gi|207743051|ref|YP_002259443.1| partial clpx protein [Ralstonia solanacearum IPO1609]
 gi|206594448|emb|CAQ61375.1| probable partial clpx protein [Ralstonia solanacearum IPO1609]
          Length = 215

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 56/196 (28%)

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH-------------- 305
           +Q+ LL L+EG+  SV  + G          ++T +ILFI  GAF               
Sbjct: 1   MQQALLKLIEGTMASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKIIMQRSDKSG 60

Query: 306 -------VSR-------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                   SR             P DL+     PE+ GR PV   L  L+++    IL +
Sbjct: 61  IGFGAEVKSREERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDEAALMEILVE 120

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ ++ QY++L+  EG+ L+    ++ A+A  A+   +     GAR L++++E  L D+
Sbjct: 121 PKNAIVKQYQKLLAMEGVELEIRPSALTAIARKAIKRKT-----GARGLRSIVEHALMDV 175

Query: 401 SFSASDLQE-KTVVID 415
            +   + +  + VVID
Sbjct: 176 MYDLPNHKGVQKVVID 191


>gi|312375337|gb|EFR22728.1| hypothetical protein AND_14288 [Anopheles darlingi]
          Length = 699

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+
Sbjct: 342 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLL 394



 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GRFPV V   SL+      ILT+  + L+ QYK L+  + + L FT++++  +A +A
Sbjct: 552 EFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKALLGMDQVELSFTDEALKQIAQLA 611

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +   +     GAR L+ +ME +L +  F       K V I  E VR
Sbjct: 612 MERQT-----GARGLRAIMETLLLEPMFEVPGSDVKGVSITEESVR 652



 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+            
Sbjct: 407 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 460

Query: 287 KYGSINTDHILFIASGAF 304
           +   ++T +ILF+ASGA+
Sbjct: 461 ETVQVDTTNILFVASGAY 478


>gi|115373589|ref|ZP_01460885.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825050|ref|YP_003957408.1| ATP-binding protein, clpx family [Stigmatella aurantiaca DW4/3-1]
 gi|115369431|gb|EAU68370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398122|gb|ADO75581.1| ATP-binding protein, ClpX family [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYII-GQQDAKRAVAI-ALRN--RWRRQQLPADLRDELMPKNILLVGPT 62
            SP+EI   L +    GQ++A+RA A+ A R+  R RR  L     +    +N L +GPT
Sbjct: 28  LSPKEIDGRLTQLGYRGQEEARRAAAVLAYRHVRRVRRLYLEGIPPEGAARENCLFLGPT 87

Query: 63  GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +   L R +   P +  + T+F+E GYVG +V  ++  L + A
Sbjct: 88  GSGKTYLVELLFREILSVPTVMADATQFSETGYVGDDVNTLVSRLYEAA 136


>gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii]
          Length = 867

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++NR R Q++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 183 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 236

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 237 YVGQGAKRI 245


>gi|293332851|ref|NP_001169842.1| hypothetical protein LOC100383734 [Zea mays]
 gi|224031951|gb|ACN35051.1| unknown [Zea mays]
          Length = 190

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 14/115 (12%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ ++  LA
Sbjct: 29  LIPEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQYRKMFNLNKVKLHFTDGALRLLA 88

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEYV 419
             A+  ++     GAR L+ ++E VL +  +   D  EKT       VV+D E +
Sbjct: 89  KKAIAKST-----GARGLRAILETVLLEAMYEVPD--EKTGNERVDAVVVDEEAI 136


>gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
 gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
          Length = 494

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PK +LL+GP G GKT ++R LA  AG PF     ++F E+ +VGR   + IR+L  VA
Sbjct: 248 FPKGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAAR-IRELFTVA 304


>gi|195940567|ref|ZP_03085949.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
          Length = 211

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++++DA+A
Sbjct: 87  LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 146

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 147 KKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 186


>gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi]
 gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi]
          Length = 850

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++NR R Q++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 171 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 224

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 225 YVGQGAKRI 233


>gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
 gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
          Length = 570

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PK +LL+GP G GKT ++R LA  AG PF     ++F E+ +VGR   + IR+L  VA
Sbjct: 359 FPKGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAAR-IRELFTVA 415


>gi|34762745|ref|ZP_00143734.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887595|gb|EAA24675.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 119

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +A
Sbjct: 5   IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 64

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+        +GAR L+ ++E  + DI F
Sbjct: 65  KRALKRK-----MGARGLRAIIEHTMLDIMF 90


>gi|330928214|ref|XP_003302171.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1]
 gi|311322644|gb|EFQ89757.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1]
          Length = 604

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  L   +
Sbjct: 199 NVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 254



 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 32/93 (34%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-------------- 289
           +GI+ LDE DKI       G  V  EGVQ+ LL ++EG++V  +                
Sbjct: 263 HGIIVLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSANRPGGLSGG 322

Query: 290 ------------------SINTDHILFIASGAF 304
                             +I TD+ILFI +GAF
Sbjct: 323 PLGSPPPPGPGGNKGEVFNIRTDNILFICTGAF 355



 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 14/97 (14%)

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ--YKELMKTEGIIL 360
           +PADL     +PE+ GR P    + +L++     +LT+ + +LI Q  YK  ++   I L
Sbjct: 435 QPADLQKFGMIPELIGRIPTVCAVSALDEQALVRVLTEPKDSLIRQEEYKSFLRN--IEL 492

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
            FT  ++  +A  A  + +     GAR L+ V++++L
Sbjct: 493 RFTNGALREIARKASKMGT-----GARGLRHVVDQLL 524


>gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H]
 gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H]
          Length = 862

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           +RNR + Q++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 172 IRNREKYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 225

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 226 YVGQGAKRI 234


>gi|167948130|ref|ZP_02535204.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 181

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT+ ++ L  QY  L + EG  L+   D++ A+A
Sbjct: 56  LIPEFVGRLPVVATLQELDEDSLVKILTEPKNALTKQYGRLFEMEGCELEIRADALRAIA 115

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+T++E+VL D  +
Sbjct: 116 GKAMERKT-----GARGLRTILEQVLLDTMY 141


>gi|119476202|ref|ZP_01616554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
 gi|119450829|gb|EAW32063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
          Length = 154

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L+      ILT+ +++L  QY +L + E + +DF ED + A+A
Sbjct: 27  LIPEFVGRLPVIATLEELDVDALVSILTEPKNSLTRQYSKLFEMESVEVDFREDGVRAIA 86

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397
           + A++  +     GAR L++++E VL
Sbjct: 87  EKAMHRKT-----GARGLRSILENVL 107


>gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
           [Pediculus humanus corporis]
 gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
           [Pediculus humanus corporis]
          Length = 589

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 259 NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 314



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   SLN+     ILT+ ++ ++ QY+ L   + + L F+ +++  +A
Sbjct: 464 MIPEFVGRFPVLVAFHSLNEDFLVRILTEPKNAIVPQYQMLFSMDKVDLTFSPEALRGIA 523

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A+   +     GAR L+ +ME +L D  F
Sbjct: 524 RQAMERKT-----GARGLRAIMETLLLDSMF 549



 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 24/79 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 324 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPEKNSPRKLRG 377

Query: 291 ----INTDHILFIASGAFH 305
               ++T +ILF+ASGA++
Sbjct: 378 ETIQVDTTNILFVASGAYN 396


>gi|325117386|emb|CBZ52938.1| putative cell division protein [Neospora caninum Liverpool]
          Length = 959

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKTA++R +A  AG P+     ++F EI YVG+   + +R L   A 
Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168

Query: 112 N 112
           N
Sbjct: 169 N 169


>gi|189195398|ref|XP_001934037.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979916|gb|EDU46542.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 606

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  L   +
Sbjct: 201 NVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 256



 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 32/93 (34%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-------------- 289
           +GI+ LDE DKI       G  V  EGVQ+ LL ++EG++V  +                
Sbjct: 265 HGIIVLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSANRPGGLSGG 324

Query: 290 ------------------SINTDHILFIASGAF 304
                             +I TD+ILFI +GAF
Sbjct: 325 PLGSPPPPGPGGNKGEVFNIRTDNILFICTGAF 357



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 14/97 (14%)

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ--YKELMKTEGIIL 360
           +PADL     +PE+ GR P    + SL++     +LT+ + +LI Q  YK  ++   I L
Sbjct: 437 QPADLQKFGMIPELIGRIPTVCAVSSLDEHALVRVLTEPKDSLIRQEEYKSFLRN--IEL 494

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
            FT  ++  +A  A  + +     GAR L+ V++++L
Sbjct: 495 RFTNGALREIARKASKMGT-----GARGLRHVVDQLL 526


>gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
 gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
          Length = 604

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + +   L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 156 VAGQEEAKENLQEIVDFLNNPAKYKEIGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 210

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 211 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 242


>gi|302418874|ref|XP_003007268.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium
           albo-atrum VaMs.102]
 gi|261354870|gb|EEY17298.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium
           albo-atrum VaMs.102]
          Length = 583

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 96/267 (35%), Gaps = 106/267 (39%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV------------- 284
           I+  EN GIV LDEFDK+ ++   +G  VS EGVQ+ LL LVEGS V             
Sbjct: 263 IKAAEN-GIVVLDEFDKLASKTPAHGRDVSGEGVQQALLKLVEGSRVTLNVKENRSSRST 321

Query: 285 ---STKYG---------------------SINTDHILFIASGAF---------HVSRPA- 310
              +T Y                      +I+T +ILFI  GAF          VS+P+ 
Sbjct: 322 PPMTTNYNSGGSSPSSSQSSPPQGKVDQYTIDTSNILFIMCGAFVGLRSIVERRVSKPSM 381

Query: 311 ------------------------DLLPEIQGRFPVRVH--------------------- 325
                                   D LP      P   H                     
Sbjct: 382 GFGSDLRGRQNLSGDKHDLPKHLFDHLPHTNPDAPASTHTPLDLTTPADLQAFGFIPELI 441

Query: 326 --------LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
                   L  L   D   ILT+T  +L+ QY  L +T    L FT  ++ A+A  A   
Sbjct: 442 GRVSNICALNPLTLDDLFRILTETRHSLVAQYTALFETYPSRLHFTRKALYAIAAEAAKA 501

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSA 404
            +      AR L+  MERVL +  F A
Sbjct: 502 ETG-----ARGLKMEMERVLAEPIFEA 523



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+L++G TG GKT I   L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 204 NLLVMGNTGTGKTYILETLSKKLNVPFTIADCNAFTQAGYIGQDVETCIERLL 256


>gi|237831685|ref|XP_002365140.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|211962804|gb|EEA97999.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|221506694|gb|EEE32311.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 978

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKTA++R +A  AG P+     ++F EI YVG+   + +R L   A 
Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168

Query: 112 N 112
           N
Sbjct: 169 N 169


>gi|221487011|gb|EEE25257.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 978

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKTA++R +A  AG P+     ++F EI YVG+   + +R L   A 
Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168

Query: 112 N 112
           N
Sbjct: 169 N 169


>gi|312171573|emb|CBX79831.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia
           amylovora ATCC BAA-2158]
          Length = 206

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 34/172 (19%)

Query: 252 FDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI-----NTDHILFIASGAF 304
            DK+V++  DSG GIG S           V+G S     G +       D I F      
Sbjct: 36  LDKVVSQRVDSGIGIGFSAS---------VKGKSEKATEGELLAQVEPEDLIKF------ 80

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E
Sbjct: 81  ------GLIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFRE 134

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           +++ A+A+ A+ L  T    GAR L++++E  L D  +    + + + VVID
Sbjct: 135 EALKAIANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 181


>gi|289616254|emb|CBI57050.1| unnamed protein product [Sordaria macrospora]
          Length = 647

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+
Sbjct: 253 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLL 305



 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +GIV LDEFDKI  R++ NG  V  EGVQ+ LL LVEG+ V+
Sbjct: 317 HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 358



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           ++ PADL     +PE+ GR      L  L+  +   ILT+  ++L+ QY  L +T    L
Sbjct: 488 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 547

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            FT  ++ A+A+ A        + GAR L+  MERVL +  + A
Sbjct: 548 YFTRKALYAIAEKAAK-----NETGARGLKMEMERVLAEPMYDA 586


>gi|157065028|gb|ABV04347.1| membrane protein FtsH1 [Toxoplasma gondii]
          Length = 1250

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKTA++R +A  AG P+     ++F EI YVG+   + +R L   A 
Sbjct: 383 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 440

Query: 112 N 112
           N
Sbjct: 441 N 441


>gi|321470999|gb|EFX81973.1| hypothetical protein DAPPUDRAFT_302881 [Daphnia pulex]
          Length = 563

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113
           NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+ D   N+
Sbjct: 221 NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 280



 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFPV V   SL++     ILT+  + L+ Q++ L   + + L F+ +++ A++
Sbjct: 425 MIPEFVGRFPVIVPFHSLSQDTLVRILTEPRNALVPQFQMLFGMDKVELTFSPEALRAIS 484

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416
             A+   +     GAR L+ +ME +L D  F    SD+    V  DA
Sbjct: 485 KQAMEKKT-----GARGLRAIMETLLLDAMFEIPGSDIVSVHVTEDA 526



 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%)

Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290
           GIVFLDE DKI A       RD G       EGVQ+ +L ++EG+ V+    +       
Sbjct: 286 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNAPRKLRG 339

Query: 291 ----INTDHILFIASGAF 304
               ++T +ILF+ASGA+
Sbjct: 340 ETIQVDTTNILFVASGAY 357


>gi|108758848|ref|YP_628809.1| ATP-binding protein [Myxococcus xanthus DK 1622]
 gi|108462728|gb|ABF87913.1| ATP-binding protein, ClpX family [Myxococcus xanthus DK 1622]
          Length = 386

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSEL-DRYIIGQQDAKRAVAI-ALRN--RWRRQQLPADLRDELMPKNILLVGPT 62
            SPREI   L D    GQ +A+RA ++ A R+  R R   L     +  M +N L +GPT
Sbjct: 34  LSPREIDERLSDLGYRGQTEARRAASVLAYRHLRRIRHLFLEGLAPEPGMRENCLFLGPT 93

Query: 63  GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +   L R +   P +  + T+F+E GYVG +V  ++  L + A
Sbjct: 94  GSGKTFLVELLFREILAVPTVLADATQFSETGYVGDDVSTLLSRLYEAA 142


>gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1]
 gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax]
          Length = 896

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           +RNR + Q++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 180 IRNREKYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 233

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 234 YVGQGAKRI 242


>gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
 gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
          Length = 635

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L N  R +++ A L     P+  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQEEAKESLKEVVDFLENPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 242 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 273


>gi|1142616|gb|AAA84743.1| ClpX-like protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 190

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 62/107 (57%), Gaps = 7/107 (6%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++  +A
Sbjct: 64  LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 123

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDA 416
             A+   +     GAR L++++E ++ D+ F   + D  EK V+  A
Sbjct: 124 KKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 165


>gi|320333578|ref|YP_004170289.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319754867|gb|ADV66624.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 624

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS   R + G ++AK+    V   L+N  +  Q+ A++     PK +LLVGP G GKT +
Sbjct: 163 VSTTFRDVAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLL 217

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  A APF  V  ++F E+ +VG    + +R L D A
Sbjct: 218 ARAVAGEADAPFFSVSASEFMEM-FVGVGASR-VRTLFDDA 256


>gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122]
 gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122]
          Length = 697

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF+ +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|3413695|gb|AAC31219.1| heat shock protein [Buchnera aphidicola]
          Length = 72

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425
           I  +A+ A  +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV  H+ +
Sbjct: 1   IRHIAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDE 60

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 61  LILNNDLNRFIL 72


>gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 653

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  R QQL A +     P+ +LLVGP G GKT +++ +A  
Sbjct: 180 VAGAEEAKRELTEVVDFLKNPERYQQLGAKI-----PRGVLLVGPPGTGKTLLAKAVAGE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 235 AGVPFFSTSASEFVEL-FVGVGASR-VRDLFNQA 266


>gi|8134494|sp|O69227|HSLU_BUCSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 72

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPS 428
           +A+ A  +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV  H+ +   
Sbjct: 4   IAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDELIL 63

Query: 429 ETDMYHFIL 437
             D+  FIL
Sbjct: 64  NNDLNRFIL 72


>gi|302831638|ref|XP_002947384.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f.
           nagariensis]
 gi|300267248|gb|EFJ51432.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 43  LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           LPA +R   MP  +LL GP G GKT +++ +A  AG PF  V  ++F E+ +VGR   +I
Sbjct: 192 LPAQVR---MPSGVLLCGPPGTGKTLLAKAVAGEAGVPFFAVSASEFVEL-FVGRGAARI 247


>gi|254426145|ref|ZP_05039862.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188568|gb|EDX83533.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 652

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 15/97 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL     
Sbjct: 207 IPKGVLLVGPPGTGKTLLARAIAGEAGVPFFSISASEFIEM-FVGVGASR-VRDLF---- 260

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTR 148
                   ++ ++QA        LDAL GK+  SN R
Sbjct: 261 --------EQAKQQAPCIVFIDELDAL-GKSRASNNR 288


>gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
 gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
 gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30]
 gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30]
 gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781]
 gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763]
 gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300]
 gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937]
 gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781]
 gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763]
 gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300]
 gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937]
 gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981]
 gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++GQ++AK+ V + L+     ++       +  PKN+L  GP G GKT  ++ LA  A  
Sbjct: 104 VVGQEEAKKKVRVILKYLQNPEKF-----GKWAPKNVLFYGPPGTGKTMTAKALANEANV 158

Query: 80  PFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIV 114
           PFI V+ TK     +G   R + ++      VA  IV
Sbjct: 159 PFISVKSTKLIGEHVGDGARRIHELYERARQVAPCIV 195


>gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 667

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 167 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 223


>gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635]
 gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11]
 gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46]
          Length = 697

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 322 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 374


>gi|218195010|gb|EEC77437.1| hypothetical protein OsI_16238 [Oryza sativa Indica Group]
          Length = 571

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 316 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 368


>gi|323310018|gb|EGA63213.1| Mcx1p [Saccharomyces cerevisiae FostersO]
          Length = 271

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           A  ++ P DL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G
Sbjct: 92  ALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFG 151

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L  T+ ++  +A  A+   +     GAR L+ +MER+L ++++         V+ID  
Sbjct: 152 VRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYVLIDEA 206

Query: 418 YV 419
            V
Sbjct: 207 TV 208


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 329 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 381


>gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 617

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A+      L++  R  Q+ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 170 VAGQEEAKAALQEMVEFLKSPQRYTQIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 224

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 225 ANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 256


>gi|213852302|ref|ZP_03381834.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 200

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+A
Sbjct: 77  LIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAIA 136

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
             A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 137 RKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 176


>gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group]
          Length = 588

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 333 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 385


>gi|213419826|ref|ZP_03352892.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 171

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 34/172 (19%)

Query: 252 FDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
            DK++A   ++G+GIG               G++V  K    +   +L           P
Sbjct: 2   LDKVIANRVETGSGIGF--------------GATVKAKSDKASEGELL-------SQVEP 40

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +
Sbjct: 41  EDLIKFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRD 100

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           ++++A+A  A+   +     GAR L++++E  L D  +    +++ + VVID
Sbjct: 101 EALNAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 147


>gi|297599045|ref|NP_001046600.2| Os02g0293500 [Oryza sativa Japonica Group]
 gi|255670812|dbj|BAF08514.2| Os02g0293500 [Oryza sativa Japonica Group]
          Length = 189

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GRFP+ V L SL++     +LT  ++ L  QY +L +   + L FTE ++  ++
Sbjct: 27  LIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLIS 86

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
             A+  N+     GAR L++++E +L +  +   +++     IDA
Sbjct: 87  KRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 126


>gi|330826818|ref|YP_004390121.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|329312190|gb|AEB86605.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 626

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 207 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 263


>gi|241764607|ref|ZP_04762622.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
 gi|241365928|gb|EER60558.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
          Length = 626

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 204 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 260


>gi|319764601|ref|YP_004128538.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans
           BC]
 gi|317119162|gb|ADV01651.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           BC]
          Length = 626

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 207 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 263


>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
          Length = 864

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 14/99 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++  +A     PFIKV   +   IG    + EQ IRDL + AI 
Sbjct: 196 PKGLLLHGPPGCGKTLLASAIAGEWEVPFIKVSAPEL--IGGTSGDSEQFIRDLFEQAIA 253

Query: 113 IVRESRR------DEV------REQASINAEERILDALV 139
           I +  +R      DE+      RE A    E RI+  L+
Sbjct: 254 IAQRDKRGCIVFLDEIDTITSKRENAQREMERRIVAQLM 292


>gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
 gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
          Length = 499

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R + Q L A +     PK ILL+GP G GKT +++ +A  AG PF  +  ++F E+ 
Sbjct: 69  LKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM- 122

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 123 FVGVGASR-VRDLFDQA 138


>gi|269837856|ref|YP_003320084.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943107|sp|D1C4U5|FTSH3_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|269787119|gb|ACZ39262.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 489

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP+ +LL GP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 87  MPRGVLLAGPPGTGKTLLARAVAGEAGVPFFAMSASQFVEV-YVGVGAKR-VRDLFAAA 143


>gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1]
 gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1]
          Length = 604

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 243


>gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
 gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
          Length = 828

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 400 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 456


>gi|126668409|ref|ZP_01739366.1| ftsH; cell division protein [Marinobacter sp. ELB17]
 gi|126627118|gb|EAZ97758.1| ftsH; cell division protein [Marinobacter sp. ELB17]
          Length = 613

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 MPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
 gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
          Length = 604

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 243


>gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
 gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
          Length = 608

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 247


>gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora
           crassa]
          Length = 738

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 287 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 343


>gi|226354926|ref|YP_002784666.1| cell division protease FtsH [Deinococcus deserti VCD115]
 gi|226316916|gb|ACO44912.1| putative cell division protease ftsH; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 622

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  QL A++     PK +LLVGP G GKT ++R +A  
Sbjct: 171 VAGHEEAKRELIEVVDFLKNPAKYHQLGAEI-----PKGVLLVGPPGTGKTLLARAIAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           A  PF  V  ++F E+ +VG
Sbjct: 226 ADVPFFSVSASEFMEM-FVG 244


>gi|124267249|ref|YP_001021253.1| vesicle-fusing ATPase [Methylibium petroleiphilum PM1]
 gi|310943139|sp|A2SHH9|FTSH_METPP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|124260024|gb|ABM95018.1| Vesicle-fusing ATPase [Methylibium petroleiphilum PM1]
          Length = 617

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LL+GPTG GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 MPKGVLLMGPTGTGKTLLARAVAGEAGVPFFSISGSEFIEM-FVGVGAAR-VRDLFEQA 246


>gi|320594231|gb|EFX06634.1| intermembrane space aaa protease iap-1 [Grosmannia clavigera
           kw1407]
          Length = 811

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 378 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFTAA 434


>gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora]
          Length = 846

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 395 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 451


>gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
 gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
          Length = 608

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 247


>gi|324537345|gb|ADY49500.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ascaris suum]
          Length = 129

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR      L  LN+ D   ILT  ++ ++ QY++L   + + L F   ++ A+A
Sbjct: 27  LIPEFMGRISNIAPLVPLNEKDMLHILTKPKNAIVKQYEKLFAMDNVELKFEPQALKAMA 86

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEY 418
              +  N     +GAR L +++E+ + D+ F    D    ++VID  Y
Sbjct: 87  HKTIERN-----VGARGLSSILEKTMNDLMFEVPGDKTVTSIVIDKCY 129


>gi|302382576|ref|YP_003818399.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193204|gb|ADL00776.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 770

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           RE+ ++L+R + GQ  A   VA A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 459 RELQTDLNRAVFGQDAAIEQVASAMKLAR------AGLRDPQKPIGSFLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 VAKQLASTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 563


>gi|282898112|ref|ZP_06306107.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9]
 gi|281197256|gb|EFA72157.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9]
          Length = 157

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR P+   ++ L++     ILT   S L+ QY++L+K + + L+F E+++ A+A
Sbjct: 33  MIPEFIGRMPMVAVVEPLDEDALMAILTQPRSALVKQYQKLLKMDNVNLEFKEEALSAIA 92

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             A    +     GAR L+ ++E ++ D+ +
Sbjct: 93  QEAYRRKT-----GARALRGIVEELMLDVMY 118


>gi|298530331|ref|ZP_07017733.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509705|gb|EFI33609.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 743

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E +  LD++    I GQ  A +A+  A++ R R     A LR+E     N LL+GPT
Sbjct: 439 SDKEKLFSLDQHLQDAIFGQDKAIQALTRAVK-RSR-----AGLREENKTIGNFLLIGPT 492

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT +SR++A++ G  FI+ +++++ E   V R
Sbjct: 493 GVGKTELSRQMAQVMGVSFIRFDMSEYMEKHAVAR 527


>gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642]
 gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
          Length = 352

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 13/116 (11%)

Query: 6   NFSPREIVSELDRYI-----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           N+S R+IV+E+ + +     +GQ++AKR   I L      ++       +  PKN+L  G
Sbjct: 89  NYS-RDIVTEIVKDVKLDDVVGQEEAKRKARIILEYLKNPEKF-----GKWAPKNVLFYG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114
           P G GKT +++ LA  A  PF+ V+ T+     +G   R + ++      +A  IV
Sbjct: 143 PPGTGKTMMAKALANEAKVPFLSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIV 198


>gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7]
 gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7]
          Length = 880

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++NR +  ++ A      MPK +LLVGP G GKT ++R +A  A  P+I     +F EI 
Sbjct: 168 IKNREKYHEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 221

Query: 94  YVGRNVEQI 102
           YVG+  ++I
Sbjct: 222 YVGQGAKRI 230


>gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
 gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
          Length = 626

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 201 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 257


>gi|94498369|ref|ZP_01304927.1| ATP dependent Clp protease [Sphingomonas sp. SKA58]
 gi|94422124|gb|EAT07167.1| ATP dependent Clp protease [Sphingomonas sp. SKA58]
          Length = 776

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 18/109 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++
Sbjct: 459 LTTDLKRVVFGQDKAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVA 512

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           R+LA L G P  + +++++ E            GYVG +   ++ D VD
Sbjct: 513 RQLATLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561


>gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
 gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
          Length = 649

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ YVG    + +RDL D A
Sbjct: 228 IPKGALLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFVEM-YVGMGAAK-VRDLFDQA 284


>gi|291276742|ref|YP_003516514.1| putative Cell division protein FtsH [Helicobacter mustelae 12198]
 gi|290963936|emb|CBG39773.1| putative Cell division protein FtsH [Helicobacter mustelae 12198]
          Length = 511

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP+ +LLVGP GVGKT I++ +A  AG PF       F +I Y G   ++ +R+L  VA
Sbjct: 159 MPRGVLLVGPPGVGKTLIAKAMAGEAGVPFFYQSSASFVQI-YTGMGAKR-VRELFSVA 215


>gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
 gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
          Length = 660

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +   L+N  R  +L A +     PK +LLVGP G GKT ++R +A  AG PF  +  +
Sbjct: 192 REIVEFLKNPKRFNELGARI-----PKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGS 246

Query: 88  KFTEIGYVGRNVEQIIRDLVDVA 110
            F E+ +VG    + +RDL D A
Sbjct: 247 DFVEM-FVGVGASR-VRDLFDQA 267


>gi|221135516|ref|ZP_03561819.1| ATP-dependent protease ATP-binding subunit ClpX [Glaciecola sp.
           HTCC2999]
          Length = 147

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 304 FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           F    P DL     +PE  GR PV   L+ LN+     ILT  ++ +  QY  L   E  
Sbjct: 11  FKAVEPEDLVRYGLIPEFIGRLPVVTSLEELNEEALIQILTQPKNAITKQYGALFALEDT 70

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
            L+F ED++ A+A  A+   +     GAR L++++E VL
Sbjct: 71  QLEFREDALTAIAKKAMERKT-----GARGLRSIVEAVL 104


>gi|320352510|ref|YP_004193849.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121012|gb|ADW16558.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 605

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 246


>gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
 gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
          Length = 635

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L    R +++ A L     P+  LLVGP G GKT +++ +A  
Sbjct: 189 VAGQEEAKESLKEVVDFLEKPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 243

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 244 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 275


>gi|168047367|ref|XP_001776142.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672517|gb|EDQ59053.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 495

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VGR   +I
Sbjct: 238 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSASASEFVEM-FVGRGAARI 287


>gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 646

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L+   + Q++ A       P+ +LLVGP G GKT +++ +A  
Sbjct: 210 VAGQDEAKESLVEVVDYLKEPKKYQEIGAQ-----APRGVLLVGPPGTGKTLMAKAVAGE 264

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 265 AGVPFFSIAGSEFVEM-FVGRGAAK-VRDLFKQA 296


>gi|148926085|ref|ZP_01809771.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845564|gb|EDK22656.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 527

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 173 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 229


>gi|84683661|ref|ZP_01011564.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84668404|gb|EAQ14871.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2654]
          Length = 777

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ DA  A++ A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 463 RDLEGSLKRVVFGQDDAITALSSAIKLSR------AGLRDPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++R+LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 517 VARQLASQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 573


>gi|53804996|ref|YP_113346.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|81682587|sp|Q60AK1|FTSH_METCA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|53758757|gb|AAU93048.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 637

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 223 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNISGSEFIEL-FVGVGAAR-VRDLFEQA 279


>gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
 gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
          Length = 727

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|210623041|ref|ZP_03293528.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
 gi|210153844|gb|EEA84850.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
          Length = 627

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKEALTEIVDYLHNPAKYREIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 AGVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 253


>gi|86150472|ref|ZP_01068697.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596784|ref|ZP_01100021.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562621|ref|YP_002344400.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839067|gb|EAQ56331.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191625|gb|EAQ95597.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360327|emb|CAL35123.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315928364|gb|EFV07679.1| metalloprotease [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|255539168|ref|XP_002510649.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223551350|gb|EEF52836.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 692

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL D A
Sbjct: 297 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFDKA 353


>gi|116199775|ref|XP_001225699.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51]
 gi|88179322|gb|EAQ86790.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51]
          Length = 745

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 281 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNTA 337


>gi|315058448|gb|ADT72777.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|284926235|gb|ADC28587.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
          Length = 710

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|298242611|ref|ZP_06966418.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297555665|gb|EFH89529.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 656

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ISR +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 203 IPKGLLLVGPPGTGKTLISRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 259


>gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
 gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
          Length = 710

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|57237830|ref|YP_179078.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
 gi|57166634|gb|AAW35413.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|283956403|ref|ZP_06373883.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792123|gb|EFC30912.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 536

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 182 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 238


>gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
 gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
          Length = 685

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|86152943|ref|ZP_01071148.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121612530|ref|YP_001000684.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005606|ref|ZP_02271364.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|85843828|gb|EAQ61038.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249291|gb|EAQ72252.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
 gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 660

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     PK ILLVGP G GKT ++R +A  AG PF+ V  + F E+ 
Sbjct: 192 LRDPSRFSQLGARI-----PKGILLVGPPGTGKTLLARAVAGEAGVPFMSVSGSDFMEM- 245

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 246 FVGVGAAR-VRDLFQTA 261


>gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
 gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
 gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
          Length = 709

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|153952493|ref|YP_001397916.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939939|gb|ABS44680.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU121]
          Length = 685

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|157415262|ref|YP_001482518.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386226|gb|ABV52541.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747904|gb|ADN91174.1| cell division protein (ftsH) [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932133|gb|EFV11076.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|86150829|ref|ZP_01069045.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85841999|gb|EAQ59245.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 538

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|332707340|ref|ZP_08427390.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353831|gb|EGJ33321.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 597

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A 
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQAK 230

Query: 112 N 112
           N
Sbjct: 231 N 231


>gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
 gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
          Length = 711

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
 gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
          Length = 552

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108
           MPK +LLVGP GVGKT I++ +A  AG PF     + F +I YVG   + V ++ +   +
Sbjct: 186 MPKGVLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGSAFVQI-YVGMGAKRVRELFKKAKE 244

Query: 109 VAINIV 114
           +A +IV
Sbjct: 245 MAPSIV 250


>gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
 gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
          Length = 718

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 275 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFTSA 331


>gi|169334953|ref|ZP_02862146.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257691|gb|EDS71657.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
          Length = 604

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK A   +   L N  R QQ+ A +     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGEDEAKEALTEIVDFLHNPGRYQQIGAKI-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 253


>gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus
           epidermidis FRI909]
          Length = 700

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+++AK  ++     LRN  +   + A L     P+ ILLVGP G GKT ++R +A  
Sbjct: 205 VAGEEEAKAELSEVVDFLRNPMKYHAIGARL-----PRGILLVGPPGTGKTLLARAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL + A
Sbjct: 260 AGVPFFSVSASEFVEM-FVGVGASR-VRDLFERA 291


>gi|269926167|ref|YP_003322790.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789827|gb|ACZ41968.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 643

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 193 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 249


>gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 532

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +LLVGP GVGKT I++ +A  AG PF       F EI YVG   +++
Sbjct: 178 MPKGVLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGASFVEI-YVGMGAKRV 227


>gi|307105269|gb|EFN53519.1| hypothetical protein CHLNCDRAFT_136599 [Chlorella variabilis]
          Length = 609

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G   AKR +A     L+N  +  ++ A      MP  +LL GP G GKT ++R +A  
Sbjct: 330 VAGMDAAKRELAEVVACLKNSSKFARMGAQ-----MPSGVLLSGPPGTGKTLLARAVAGE 384

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           AG PF  V  ++F E+ +VGR   +I
Sbjct: 385 AGVPFFAVSASEFVEL-FVGRGAARI 409


>gi|205356716|ref|ZP_03223477.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345454|gb|EDZ32096.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 536

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   +++
Sbjct: 182 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 231


>gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A]
 gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis
           RP62A]
 gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU144]
 gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU028]
 gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU045]
          Length = 700

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|296808071|ref|XP_002844374.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
 gi|238843857|gb|EEQ33519.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
          Length = 803

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 427


>gi|269836808|ref|YP_003319036.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943090|sp|D1C1U7|FTSH1_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|269786071|gb|ACZ38214.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 653

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 195 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 251


>gi|307721184|ref|YP_003892324.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294]
 gi|306979277|gb|ADN09312.1| AAA ATPase central domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 551

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +LLVGP GVGKT I++ +A  AG PF       F +I YVG   +++
Sbjct: 185 MPKGVLLVGPPGVGKTMIAKAVAHEAGVPFYYQSGASFVQI-YVGMGAKRV 234


>gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
 gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
          Length = 695

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|254413594|ref|ZP_05027364.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179701|gb|EDX74695.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 612

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A 
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQAK 246

Query: 112 N 112
           N
Sbjct: 247 N 247


>gi|294011232|ref|YP_003544692.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium
           japonicum UT26S]
 gi|292674562|dbj|BAI96080.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium
           japonicum UT26S]
          Length = 773

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++R+
Sbjct: 462 TDLKRVVFGQNRAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 515

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA L G P  + +++++ E            GYVG +   ++ D VD
Sbjct: 516 LAHLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 562


>gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
 gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
          Length = 615

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  +L A++     PK +LLVGP G GKT ++R +A  
Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  V  ++F E+ +VG
Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240


>gi|291517938|emb|CBK73159.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 214

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 56/196 (28%)

Query: 275 LLPLVEGSSVSTKYG-----------SINTDHILFIASGAF-------------HVS--- 307
           +L L+EG+ V    G           +INT +ILFI  GAF             H S   
Sbjct: 1   MLKLLEGADVEVPIGASSKNAMVPTTTINTRNILFICGGAFPAMDEIIKARLNKHSSMGF 60

Query: 308 -----------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                  R   ++PE  GR P+    + L++     IL + ++ 
Sbjct: 61  MADLKDKYDDDKNILQKVTVEDLREFGMIPEFIGRLPIVFATEMLDEDMLVRILKEPKNA 120

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS- 403
           +I QY++L++ + + L+F E ++ A+A  A++       +GAR L++++E  + DI +  
Sbjct: 121 IIKQYQKLLELDEVKLEFEEGALHAIARKALD-----KKLGARGLRSIIEEFMLDIMYEI 175

Query: 404 ASDLQEKTVVIDAEYV 419
             D     V+I  +Y+
Sbjct: 176 PKDDNIGQVIITEDYI 191


>gi|198415852|ref|XP_002129659.1| PREDICTED: similar to ATPase family, AAA domain containing 1 [Ciona
           intestinalis]
          Length = 373

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           L PK ILL GP G GKT I++  AR AG  FI +EV + T+  Y
Sbjct: 135 LPPKGILLYGPPGCGKTMIAKATAREAGCAFINIEVQQLTDKWY 178


>gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A+      L++  R +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 171 VAGQEEAKAALQEMVEFLKSPERYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 226 ANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 257


>gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
          Length = 699

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+++AK  +A     L+N  +  ++ A L     P+ +LLVGP G GKT ++R +A  
Sbjct: 253 VAGEEEAKAELAQVVDFLKNPAKYHRIGARL-----PRGVLLVGPPGTGKTLLARAVAGE 307

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL + A
Sbjct: 308 AGVPFFSVSASEFVEM-FVGVGASR-VRDLFERA 339


>gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
 gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
          Length = 635

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L    R +++ A L     P+  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQEEAKESLKEVVDFLEKPKRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 242 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 273


>gi|15827019|ref|NP_301282.1| integral membrane peptidase [Mycobacterium leprae TN]
 gi|221229497|ref|YP_002502913.1| putative integral membrane peptidase [Mycobacterium leprae Br4923]
 gi|13092566|emb|CAC29730.1| putative integral membrane peptidase [Mycobacterium leprae]
 gi|219932604|emb|CAR70315.1| putative integral membrane peptidase [Mycobacterium leprae Br4923]
          Length = 790

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 239 FVGVGASR-VRDLFDQA 254


>gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 617

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  +L A++     PK +LLVGP G GKT ++R +A  
Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  V  ++F E+ +VG
Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240


>gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga]
 gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva]
          Length = 806

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT +++ +A   G PFI     +F EI YVG+  ++I
Sbjct: 263 VPKGILLVGPPGTGKTMLAKAVATETGIPFIYTSGPEFVEI-YVGQGAQRI 312


>gi|47220509|emb|CAG05535.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 669

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 14/125 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+  E ++ A+A
Sbjct: 500 MIPEFVGRLPVVVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCELNVNEAALRAIA 559

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA--SDLQEKTVVIDA-------EYVRLH 422
            +A+   +     GAR L+++ME++L +  F    SD+    V  DA        YVRL 
Sbjct: 560 RMALERKT-----GARGLRSIMEKLLLEPMFEVPHSDIVAVEVDKDAVQGKSQPRYVRLD 614

Query: 423 IGDFP 427
           +   P
Sbjct: 615 LRPAP 619



 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%)

Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290
           GIVFLDE DKI    S  GI     V  EGVQ+ LL L+EG+ V+    +          
Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPEKNSRKLRGETVQ 410

Query: 291 INTDHILFIASGAFH 305
           ++T +ILF+ASGAF+
Sbjct: 411 VDTTNILFVASGAFN 425



 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 33/115 (28%)

Query: 55  NILLVGPTG----------------------------VGKTAISRRLARLAGAPFIKVEV 86
           NI+L+GPTG                             GKT +++ LAR    PF   + 
Sbjct: 261 NIILLGPTGSGDGGRRPSASACPGGLSLTTPPHPLTVAGKTLLAQTLARCLDVPFAICDC 320

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILD 136
           T  T+ GYVG ++E +I  L+  A   V ++++     DEV +  S+    ++ D
Sbjct: 321 TTLTQAGYVGEDIESVIAKLLQDANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 375


>gi|14423720|sp|Q9CD58|FTSH_MYCLE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3097225|emb|CAA18796.1| cell division protein FtsH [Mycobacterium leprae]
          Length = 787

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 236 FVGVGASR-VRDLFDQA 251


>gi|283954556|ref|ZP_06372075.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793960|gb|EFC32710.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
          Length = 538

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L++GP GVGKT I++ +A  AG PF     + F EI YVG   ++ +R+L   A
Sbjct: 184 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240


>gi|242091595|ref|XP_002441630.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
 gi|241946915|gb|EES20060.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
          Length = 771

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 295 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFNAA 351


>gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
          Length = 652

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 195 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 251


>gi|57168871|ref|ZP_00368001.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|305431978|ref|ZP_07401145.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
 gi|57019707|gb|EAL56393.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|304445062|gb|EFM37708.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
          Length = 534

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI YVG   +++
Sbjct: 180 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 229


>gi|294340162|emb|CAZ88534.1| Cell division protease ftsH [Thiomonas sp. 3As]
          Length = 629

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVGP GVGKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 211 PKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 266


>gi|296135939|ref|YP_003643181.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
 gi|295796061|gb|ADG30851.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
          Length = 629

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVGP GVGKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 211 PKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 266


>gi|206896312|ref|YP_002247246.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738929|gb|ACI18007.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 605

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK+    +   L+N  + Q + A +     PK +LLVGP GVGKT +++ +A  
Sbjct: 167 VAGSEEAKKDLLEIVDFLKNPKKYQLIGAKI-----PKGVLLVGPPGVGKTLMAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL + A
Sbjct: 222 AGVPFFSVSGSEFVEM-FVGVGAAR-VRDLFEQA 253


>gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria
           annulata]
 gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue),
           putative [Theileria annulata]
          Length = 805

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT +++ +A   G PFI     +F EI YVG+  ++I
Sbjct: 263 VPKGILLVGPPGTGKTMLAKAVATETGIPFIYTSGPEFVEI-YVGQGAQRI 312


>gi|328866875|gb|EGG15258.1| Putative FtsH protease [Dictyostelium fasciculatum]
          Length = 729

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           ++G ++AK   + +   LRN  +  +     R+ + PK ILLVGP G GKT +++ LA  
Sbjct: 202 VVGAEEAKSELQDLVDYLRNPGKYAE-----RNIVTPKGILLVGPPGTGKTLLAKALAGE 256

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV----------RESRRDEVRE 124
           A  PFI +  ++F E  IG   + V ++  +   +A  IV            S+R     
Sbjct: 257 ARIPFISINGSEFEEMFIGVGAKRVRELFAEARKMAPCIVFIDEIDSVGGSRSKRINYHP 316

Query: 125 QASINAEERILDALVGKT-----ATSNTREVFRKKL-RDGEISDKEIDIEVAD-TSSDIS 177
             ++N     LD   G+      A +N +E     L R G   D+ I +++ D  ++ I 
Sbjct: 317 SDALNQLLVELDGFTGREGVIVLAATNFQETLDPALVRSGRF-DRSIQVQLPDYVNTQIL 375

Query: 178 NFDIPGGASVGILNL 192
               PG +   + NL
Sbjct: 376 AQSTPGFSGADLFNL 390


>gi|119194407|ref|XP_001247807.1| hypothetical protein CIMG_01578 [Coccidioides immitis RS]
          Length = 811

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435


>gi|303311303|ref|XP_003065663.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105325|gb|EER23518.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 811

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435


>gi|309790421|ref|ZP_07684983.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227534|gb|EFO81200.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 642

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 200 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 256


>gi|316935669|ref|YP_004110651.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
 gi|315603383|gb|ADU45918.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
          Length = 617

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 MPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|312113350|ref|YP_004010946.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218479|gb|ADP69847.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
          Length = 626

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G+GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 VPKGILLVGPPGIGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|171688928|ref|XP_001909404.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944426|emb|CAP70537.1| unnamed protein product [Podospora anserina S mat+]
          Length = 771

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 312 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFNAA 368


>gi|320039500|gb|EFW21434.1| intermembrane space AAA protease IAP-1 [Coccidioides posadasii str.
           Silveira]
          Length = 811

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435


>gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 602

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 18/97 (18%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           +EL+  +   +D KR  A+  R                +PK +LLVGP G GKT ++R +
Sbjct: 168 AELEEIVEFLKDPKRFTALGAR----------------IPKGVLLVGPPGTGKTLLARAV 211

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 212 AGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 246


>gi|118463779|ref|YP_879822.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
 gi|118165066|gb|ABK65963.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
          Length = 799

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 236 FVGVGASR-VRDLFDQA 251


>gi|41406546|ref|NP_959382.1| hypothetical protein MAP0448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394895|gb|AAS02765.1| FtsH [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 799

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 236 FVGVGASR-VRDLFDQA 251


>gi|302343613|ref|YP_003808142.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
 gi|301640226|gb|ADK85548.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
          Length = 609

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK +LLVGP G GKT +SR +A  AG PF  +  ++F E+ +VG
Sbjct: 185 MPKGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEL-FVG 228


>gi|254773201|ref|ZP_05214717.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 799

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 236 FVGVGASR-VRDLFDQA 251


>gi|163847597|ref|YP_001635641.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525452|ref|YP_002569923.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
 gi|163668886|gb|ABY35252.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449331|gb|ACM53597.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
          Length = 654

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 201 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 257


>gi|326792449|ref|YP_004310270.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326543213|gb|ADZ85072.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 655

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N+ R  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 186 LKNQNRYIQVGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 239

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 240 FVGVGASR-VRDLFEQA 255


>gi|293630868|gb|ACB29725.3| FtsH4 protein [Triticum monococcum subsp. aegilopoides]
 gi|293630870|gb|ACU00615.2| FtsH4 protein [Triticum monococcum subsp. monococcum]
          Length = 706

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 252 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 308


>gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 369

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ+DAK+   I ++      Q P +L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 124 IIGQEDAKKKCKIIMK----YLQNP-ELFGEWAPKNVLFYGPPGTGKTMMARALATETDS 178

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 179 SFIMVKAPEL--IGEHVGDSA-KMIRELYKKA 207


>gi|307294290|ref|ZP_07574134.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium
           chlorophenolicum L-1]
 gi|306880441|gb|EFN11658.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium
           chlorophenolicum L-1]
          Length = 773

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++R+
Sbjct: 462 TDLKRVVFGQNRAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 515

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA L G P  + +++++ E            GYVG +   ++ D VD
Sbjct: 516 LATLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 562


>gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
 gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
          Length = 681

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 635

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  R + + A     +MPK +LLVGP G GKT +++ +A  
Sbjct: 169 VAGQDEAKEALQEIVNYLHNPARYKAIGA-----VMPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 224 AKVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 255


>gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
 gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
          Length = 354

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++GQ++AKR V + L      ++       +  P+N+L  GP G GKT  ++ LA  A  
Sbjct: 110 VVGQEEAKRKVKVILEFLKNPEKF-----GKWAPRNVLFYGPPGTGKTMTAKALANEAKV 164

Query: 80  PFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114
           PF+ V+ TK     +G   R + ++      VA  IV
Sbjct: 165 PFLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIV 201


>gi|254457852|ref|ZP_05071279.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
 gi|207085245|gb|EDZ62530.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
          Length = 547

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MP+ +LLVGP GVGKT I++ +A  AG PF       F +I YVG   ++ + +L   A 
Sbjct: 181 MPRGVLLVGPPGVGKTMIAKAVAHEAGVPFFYQSGASFVQI-YVGMGAKR-VHELFHAAK 238

Query: 112 N 112
           N
Sbjct: 239 N 239


>gi|164686639|ref|ZP_02210667.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
 gi|164604368|gb|EDQ97833.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
          Length = 672

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     PK IL+VGP G GKT +SR +A  AG PF  +  + F E+ 
Sbjct: 188 LKNPKRYIELGARI-----PKGILMVGPPGTGKTYLSRAVAGEAGVPFFTISGSDFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGASR-VRDLFEQA 257


>gi|258567738|ref|XP_002584613.1| cell division protein ftsH [Uncinocarpus reesii 1704]
 gi|237906059|gb|EEP80460.1| cell division protein ftsH [Uncinocarpus reesii 1704]
          Length = 826

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L + A
Sbjct: 394 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 450


>gi|159472685|ref|XP_001694475.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276699|gb|EDP02470.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 234

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP  +LL GP G GKT +++ +A  AG PF  V  ++F E+ +VGR   +I
Sbjct: 40  MPSGVLLCGPPGTGKTLLAKAVAGEAGVPFFAVSASEFVEM-FVGRGAARI 89


>gi|78778614|ref|YP_396726.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9312]
 gi|78712113|gb|ABB49290.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 617

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 250


>gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis]
 gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis]
          Length = 716

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 312


>gi|219849535|ref|YP_002463968.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
 gi|310943124|sp|B8G4Q6|FTSH_CHLAD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219543794|gb|ACL25532.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
          Length = 656

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 201 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 257


>gi|148658441|ref|YP_001278646.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
 gi|148570551|gb|ABQ92696.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
          Length = 640

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 196 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252


>gi|315638250|ref|ZP_07893432.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
 gi|315481786|gb|EFU72408.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
          Length = 530

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L++GP GVGKT I++ +A  AG PF     + F EI YVG   +++
Sbjct: 177 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 226


>gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 648

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 249


>gi|253721988|gb|ACT34058.1| FtsH4 [Aegilops tauschii]
          Length = 709

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 246 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 302


>gi|15807950|ref|NP_285613.1| cell division protein FtsH [Deinococcus radiodurans R1]
 gi|6460771|gb|AAF12476.1|AE001863_101 cell division protein FtsH [Deinococcus radiodurans R1]
          Length = 655

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A  
Sbjct: 202 VAGHEEAKRELIEVVDFLKNPAKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 256

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           A  PF  V  ++F E+ +VG    ++
Sbjct: 257 ADVPFFSVSASEFMEM-FVGVGASRV 281


>gi|149193778|ref|ZP_01870876.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
 gi|149135731|gb|EDM24209.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
          Length = 493

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP GVGKT I++ LA  AG PF     + F ++ YVG   ++ +RDL   A
Sbjct: 127 LPKGVLLVGPPGVGKTLIAKALAGEAGVPFFYQSGSSFVQM-YVGVGAKR-VRDLFSKA 183


>gi|78777221|ref|YP_393536.1| peptidase M41 [Sulfurimonas denitrificans DSM 1251]
 gi|78497761|gb|ABB44301.1| Peptidase M41 [Sulfurimonas denitrificans DSM 1251]
          Length = 547

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP+ +LLVGP GVGKT I++ +A  AG PF       F +I YVG   +++
Sbjct: 181 MPRGVLLVGPPGVGKTMIAKAVANAAGVPFYYQSGASFVQI-YVGMGAKRV 230


>gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa]
 gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 264 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 320


>gi|18401040|ref|NP_565616.1| ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75100022|sp|O80983|FTSH4_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=AtFTSH4; Flags: Precursor
 gi|20197264|gb|AAC31223.2| FtsH protease, putative [Arabidopsis thaliana]
 gi|330252705|gb|AEC07799.1| cell division protease ftsH-4 [Arabidopsis thaliana]
          Length = 717

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 315


>gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 688

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    + +RDL D A
Sbjct: 221 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASR-VRDLFDKA 277


>gi|225016527|ref|ZP_03705719.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
 gi|224950756|gb|EEG31965.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
          Length = 662

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ YVG    + +RDL + A
Sbjct: 209 IPKGVLLIGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASR-VRDLFEQA 265


>gi|326475725|gb|EGD99734.1| intermembrane space AAA protease [Trichophyton tonsurans CBS
           112818]
          Length = 802

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 370 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 419


>gi|57242029|ref|ZP_00369969.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
 gi|57017221|gb|EAL54002.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
          Length = 530

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L++GP GVGKT I++ +A  AG PF     + F EI YVG   +++
Sbjct: 177 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 226


>gi|297565113|ref|YP_003684085.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
 gi|296849562|gb|ADH62577.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
          Length = 620

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS   + + G  +AKR    V   L+N  +   + A++     PK +LLVGP G GKT +
Sbjct: 159 VSTTFKDVAGHTEAKRELMEVVDFLKNPQKYIAIGAEI-----PKGVLLVGPPGTGKTLL 213

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           SR +A  AG PF  V  ++F E+ +VG    + +R L + A
Sbjct: 214 SRAIAGEAGVPFFSVSASEFMEM-FVGVGASR-VRSLFEEA 252


>gi|156740727|ref|YP_001430856.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
 gi|156232055|gb|ABU56838.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
          Length = 638

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 196 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252


>gi|326499736|dbj|BAJ86179.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 707

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 252 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 308


>gi|218290651|ref|ZP_03494742.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239316|gb|EED06514.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 602

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 246


>gi|255947742|ref|XP_002564638.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591655|emb|CAP97894.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 798

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL
Sbjct: 364 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 416


>gi|297825729|ref|XP_002880747.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326586|gb|EFH57006.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 718

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 315


>gi|302499021|ref|XP_003011507.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
 gi|291175058|gb|EFE30867.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
          Length = 718

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 286 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 335


>gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740]
 gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella
           succinogenes]
          Length = 579

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+    L     PK +LL+GP GVGKT I++ +A  AG PF     + F +I 
Sbjct: 200 LKNPAKYQKFGTKL-----PKGVLLMGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFAQI- 253

Query: 94  YVGRNVEQIIRDL 106
           YVG   ++ +RDL
Sbjct: 254 YVGMGAKR-VRDL 265


>gi|326485351|gb|EGE09361.1| intermembrane space AAA protease IAP-1 [Trichophyton equinum CBS
           127.97]
          Length = 793

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 378 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 427


>gi|302659076|ref|XP_003021233.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
 gi|291185121|gb|EFE40615.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
          Length = 717

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 285 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 334


>gi|289422494|ref|ZP_06424337.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
 gi|289157066|gb|EFD05688.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
          Length = 625

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGILMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|242769231|ref|XP_002341728.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
 gi|218724924|gb|EED24341.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
          Length = 807

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL
Sbjct: 372 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 424


>gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis]
          Length = 705

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F EI +VG+   + +RDL   A
Sbjct: 323 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAAGPEFDEI-FVGQGARR-VRDLFKAA 379


>gi|53804153|ref|YP_114227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus
           capsulatus str. Bath]
 gi|53757914|gb|AAU92205.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus
           capsulatus str. Bath]
          Length = 756

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ S L   + GQ +A  A++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 452 RDLESNLKMLVFGQDEAIAALSSAIKLSR------AGLRDGQKPIGSFLFAGPTGVGKTE 505

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LAR+ G   I+ +++++ E   V R
Sbjct: 506 VTRQLARMLGVELIRFDMSEYMERHTVSR 534


>gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog
           [Acyrthosiphon pisum]
          Length = 710

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F EI  VG+   + IRDL   A
Sbjct: 306 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGSEFDEI-LVGQGARR-IRDLFKAA 362


>gi|255316772|gb|ACU01771.1| protease FtsH-like protein 4 [Brachypodium distachyon]
          Length = 589

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 129 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 185


>gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
 gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
          Length = 609

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 177 LKNPKKFQELGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 231 FVGVGASR-VRDLFDQA 246


>gi|309799589|ref|ZP_07693815.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
 gi|308116777|gb|EFO54227.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
          Length = 128

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A
Sbjct: 14  IIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIA 73

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+   +     GAR L++++E  + D+ F     +  KTV I  E V
Sbjct: 74  NKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 117


>gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
 gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
          Length = 599

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 245


>gi|166032913|ref|ZP_02235742.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC
           27755]
 gi|166027270|gb|EDR46027.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC
           27755]
          Length = 441

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 13/78 (16%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++P+ I   LD  +  Q++AK+A AI L N  + ++           +N++L GPTG GK
Sbjct: 131 WTPQMIYEYLDENVYRQENAKKAAAIMLYNHLKGRR-----------RNMILAGPTGCGK 179

Query: 67  TAISRRLARLAGAPFIKV 84
           T I R L +    PFIK+
Sbjct: 180 TEIWRSLQKR--FPFIKI 195


>gi|327295456|ref|XP_003232423.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
 gi|326465595|gb|EGD91048.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
          Length = 806

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 374 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 423


>gi|118593590|ref|ZP_01550967.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
 gi|118433808|gb|EAV40468.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
          Length = 608

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 352

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 9   PREIVSELDRYI-----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           PR I +E+ R I     +GQ++AKR   + L      ++       +  PKN+L  GP G
Sbjct: 91  PRVIETEIVRDITLDDVVGQEEAKRKAKVILEYLRNPEKF-----GKWAPKNVLFYGPPG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114
            GKT +++ L+  A  PF+ V+ TK     +G   R V ++      +A  IV
Sbjct: 146 TGKTMMAKALSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIV 198


>gi|323451269|gb|EGB07147.1| hypothetical protein AURANDRAFT_12251 [Aureococcus anophagefferens]
          Length = 313

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G QDAKR++   +    +R +L   LR   +PK +LL GP G GKT I R +A  +GA
Sbjct: 32  VAGLQDAKRSIMEMVIWPMQRPELFTGLR--AVPKGMLLFGPPGTGKTLIGRAIASSSGA 89

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +      ++G + E+++R +  VA
Sbjct: 90  TFFSISASSLMS-KWIGES-EKLVRTMFAVA 118


>gi|291296855|ref|YP_003508253.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290471814|gb|ADD29233.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 622

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VG    + +R L D A
Sbjct: 198 IPKGVLLVGPPGTGKTLLTRAVAGEAGVPFFSVSASEFMEM-FVGVGASR-VRTLFDEA 254


>gi|224372903|ref|YP_002607275.1| ATPase Zn protease [Nautilia profundicola AmH]
 gi|223589089|gb|ACM92825.1| ATPase EC ATP-dependent Zn protease [Nautilia profundicola AmH]
          Length = 494

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP GVGKT I++ LA  AG PF     + F ++ YVG   ++ +RDL
Sbjct: 128 LPKGVLLVGPPGVGKTLIAKALAGEAGVPFFYQSGSSFVQM-YVGVGAKR-VRDL 180


>gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1]
          Length = 790

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI +VG   ++ +R+L   A 
Sbjct: 339 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFTAAK 396

Query: 112 N 112
           N
Sbjct: 397 N 397


>gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 723

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    + +RDL D A
Sbjct: 246 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASR-VRDLFDKA 302


>gi|315042828|ref|XP_003170790.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
 gi|311344579|gb|EFR03782.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
          Length = 805

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   +++
Sbjct: 373 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 422


>gi|212542291|ref|XP_002151300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
 gi|210066207|gb|EEA20300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
          Length = 788

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL
Sbjct: 353 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 405


>gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1]
 gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 630

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF+ +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTMLARAIAGEAGVPFLSINGSEFVEM-FVGVGAAR-VRDLFEQA 250


>gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum]
          Length = 706

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 258 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFTAA 314


>gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
 gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
          Length = 680

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK ++A     L N  + +++ A +     PK ILLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKESLAEIVDFLHNPGKYKEIGARV-----PKGILLVGPPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 AKVPFFTISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|254502137|ref|ZP_05114288.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222438208|gb|EEE44887.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 608

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|255655844|ref|ZP_05401253.1| cell division protein [Clostridium difficile QCD-23m63]
 gi|296450877|ref|ZP_06892626.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296879122|ref|ZP_06903117.1| cell division protein FtsH [Clostridium difficile NAP07]
 gi|296260249|gb|EFH07095.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296429665|gb|EFH15517.1| cell division protein FtsH [Clostridium difficile NAP07]
          Length = 605

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A++     L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 166 VAGQDEAKEALSEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 220

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + IRDL   A
Sbjct: 221 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 252


>gi|94986281|ref|YP_605645.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556562|gb|ABF46476.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 621

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A  
Sbjct: 168 VAGHEEAKRELIEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 222

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           A  PF  V  ++F E+ +VG
Sbjct: 223 ADVPFFSVSASEFMEM-FVG 241


>gi|310794449|gb|EFQ29910.1| ATP-dependent metallopeptidase HflB [Glomerella graminicola M1.001]
          Length = 763

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +RDL   A
Sbjct: 303 LPKGILMVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFASA 359


>gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 618

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
 gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
          Length = 635

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 25/103 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S REIVS LD       + K+  AI  R                 PK  LLVGP G GKT
Sbjct: 195 SLREIVSFLD-------NPKKYAAIGAR----------------CPKGALLVGPPGTGKT 231

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF ++  ++F E+ +VGR   + +RDL   A
Sbjct: 232 LLARAVAGEAKVPFFQISGSEFVEM-FVGRGAAK-VRDLFKQA 272


>gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27]
          Length = 618

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  ++ A++     PK +LLVGP G GKT ++R +A  
Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  V  ++F E+ +VG
Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240


>gi|67538836|ref|XP_663192.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
 gi|40743041|gb|EAA62231.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 365 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 421


>gi|312898314|ref|ZP_07757704.1| negative regulator of genetic competence ClpC/MecB [Megasphaera
           micronuciformis F0359]
 gi|310620233|gb|EFQ03803.1| negative regulator of genetic competence ClpC/MecB [Megasphaera
           micronuciformis F0359]
          Length = 809

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 14/91 (15%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A RAVA A+R         A L+D   P  + L +GP+GVGKT ++R L
Sbjct: 501 ELHKRVIGQDEAVRAVAKAMRRSG------AGLKDPKRPVGSFLFLGPSGVGKTELARAL 554

Query: 74  ARLAG-----APFIKVEVTKFTEIGYVGRNV 99
           A  AG        I++++++FTE   V R V
Sbjct: 555 A--AGLFGDEEAMIRIDMSEFTESHAVARLV 583


>gi|253701843|ref|YP_003023032.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251776693|gb|ACT19274.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 616

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   R V   L+   + QQ+   +     PK +LLVGP G GKT ++R +A  
Sbjct: 177 VAGMEEAKQELREVVDYLKEPKKFQQIGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 232 AGVPFFSISASAFIEM-FVGVGASR-VRDLFATA 263


>gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 618

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR    V   L+N  +  ++ A++     PK +LLVGP G GKT ++R +A  
Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  V  ++F E+ +VG
Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V   +F EI  VG+   + +RDL   A
Sbjct: 332 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 388


>gi|119476067|ref|ZP_01616419.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143]
 gi|119450694|gb|EAW31928.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143]
          Length = 641

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 44  PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           PA  R+    MPK IL++GP G GKT ++R  A  AG PF  V  ++F E+ +VG    +
Sbjct: 218 PAHYRELGAKMPKGILMMGPPGCGKTLLARATAGEAGVPFFSVSGSEFIEM-FVGVGASR 276

Query: 102 IIRDLVDVA 110
            +RD+ + A
Sbjct: 277 -VRDMFNNA 284


>gi|148256655|ref|YP_001241240.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146408828|gb|ABQ37334.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 615

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247


>gi|325283722|ref|YP_004256263.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324315531|gb|ADY26646.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 634

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK+    V   L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A  
Sbjct: 170 VAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAIAGE 224

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           A  PF  V  ++F E+ +VG
Sbjct: 225 ADVPFFSVSASEFMEM-FVG 243


>gi|71028972|ref|XP_764129.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351083|gb|EAN31846.1| hypothetical protein, conserved [Theileria parva]
          Length = 680

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ILL G  G GKT I+R LA  AG PFI    ++F E+ +VG    + IRDL   A 
Sbjct: 241 LPKGILLAGSPGTGKTLIARALASEAGVPFIHASGSEFEEM-FVGVGARR-IRDLFKTAK 298

Query: 112 NI 113
           +I
Sbjct: 299 SI 300


>gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb18]
          Length = 813

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 433


>gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
 gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
          Length = 646

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +V      L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 198 VAGQEEAKESVKEIVDFLHNPAKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 252

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           AG PF  +  + F E+ +VG    + +RDL   AI
Sbjct: 253 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQAI 285


>gi|259484950|tpe|CBF81608.1| TPA: intermembrane space AAA protease IAP-1 (AFU_orthologue;
           AFUA_4G11530) [Aspergillus nidulans FGSC A4]
          Length = 784

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 347 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 403


>gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
 gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
          Length = 634

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|119493542|ref|ZP_01624207.1| cell division protein; FtsH [Lyngbya sp. PCC 8106]
 gi|119452596|gb|EAW33778.1| cell division protein; FtsH [Lyngbya sp. PCC 8106]
          Length = 615

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253


>gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 615

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247


>gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
 gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
          Length = 644

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            P+  LLVGP G GKT I++ +A  AG PF ++  ++F E+ +VGR   + +RDL   A
Sbjct: 216 CPRGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAK-VRDLFKQA 272


>gi|255306855|ref|ZP_05351026.1| cell division protein [Clostridium difficile ATCC 43255]
          Length = 583

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 144 VAGQDEAKEALTEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 198

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + IRDL   A
Sbjct: 199 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 230


>gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group]
          Length = 702

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 249 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 305


>gi|295669392|ref|XP_002795244.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
 gi|226285178|gb|EEH40744.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
          Length = 813

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 433


>gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
 gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
          Length = 632

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980]
 gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 774

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L   A
Sbjct: 329 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFTAA 385


>gi|126699436|ref|YP_001088333.1| cell division protein [Clostridium difficile 630]
 gi|254975463|ref|ZP_05271935.1| cell division protein [Clostridium difficile QCD-66c26]
 gi|255092850|ref|ZP_05322328.1| cell division protein [Clostridium difficile CIP 107932]
 gi|255101000|ref|ZP_05329977.1| cell division protein [Clostridium difficile QCD-63q42]
 gi|255314593|ref|ZP_05356176.1| cell division protein [Clostridium difficile QCD-76w55]
 gi|255517267|ref|ZP_05384943.1| cell division protein [Clostridium difficile QCD-97b34]
 gi|255650373|ref|ZP_05397275.1| cell division protein [Clostridium difficile QCD-37x79]
 gi|260683487|ref|YP_003214772.1| cell division protein [Clostridium difficile CD196]
 gi|260687083|ref|YP_003218216.1| cell division protein [Clostridium difficile R20291]
 gi|306520332|ref|ZP_07406679.1| cell division protein [Clostridium difficile QCD-32g58]
 gi|115250873|emb|CAJ68698.1| Cell division protease FtsH1 [Clostridium difficile]
 gi|260209650|emb|CBA63344.1| cell division protein [Clostridium difficile CD196]
 gi|260213099|emb|CBE04494.1| cell division protein [Clostridium difficile R20291]
          Length = 605

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 166 VAGQDEAKEALTEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 220

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + IRDL   A
Sbjct: 221 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 252


>gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays]
 gi|223947901|gb|ACN28034.1| unknown [Zea mays]
          Length = 710

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 255 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311


>gi|182678216|ref|YP_001832362.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634099|gb|ACB94873.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250


>gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|84996863|ref|XP_953153.1| metallopeptidase [Theileria annulata strain Ankara]
 gi|65304149|emb|CAI76528.1| metallopeptidase, putative [Theileria annulata]
          Length = 691

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ILL G  G GKT I+R LA  AG PFI    ++F E+ +VG    + IRDL   A 
Sbjct: 241 LPKGILLAGSPGTGKTLIARALASEAGVPFIHASGSEFEEM-FVGVGARR-IRDLFTTAK 298

Query: 112 NI 113
           +I
Sbjct: 299 SI 300


>gi|296422010|ref|XP_002840556.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636774|emb|CAZ84747.1| unnamed protein product [Tuber melanosporum]
          Length = 406

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN-----VEQIIRDLV 107
           PK +LL GP G GKT +++ LAR +GA FI + ++  TE  Y   N     V  + R L 
Sbjct: 133 PKGVLLYGPPGCGKTMLAKALARESGACFINLHISTLTEKWYGDSNKLVSAVFTLARKLQ 192

Query: 108 DV-----AINIVRESRRDEVREQASINAEERI--LDALVGKTATSNTREVF 151
                   I+ V  SR     E +++   E +   D L+  +AT N  ++ 
Sbjct: 193 PTIVFIDEIDAVLRSRSSSDHEASTMVKAEFMTHWDGLLSSSATGNASQIL 243


>gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus
           kaustophilus HTA426]
 gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III
           heat-shock) [Geobacillus kaustophilus HTA426]
          Length = 632

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
 gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III
           heat-shock) [Geobacillus thermodenitrificans NG80-2]
 gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
          Length = 631

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|30248910|ref|NP_840980.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
 gi|30138527|emb|CAD84817.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
          Length = 619

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 251


>gi|114331375|ref|YP_747597.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91]
 gi|114308389|gb|ABI59632.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha
           C91]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 251


>gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
 gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK     +   L N  R +++ A      MPK ILLVGP G GKT +++ +A
Sbjct: 169 RDVAGEDEAKENLSEIVEYLHNPARYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 224 GEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFQQA 257


>gi|197117402|ref|YP_002137829.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197086762|gb|ACH38033.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   R V   L+   + QQ+   +     PK +LLVGP G GKT ++R +A  
Sbjct: 177 VAGMEEAKQELREVVEYLKEPKKFQQVGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 232 AGVPFFSISASAFIEM-FVGVGASR-VRDLFATA 263


>gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 603

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 249


>gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           mitochondrial; Short=OsFTSH5; Flags: Precursor
 gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica
           Group]
 gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group]
          Length = 715

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 262 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 318


>gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 621

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VG    + +R L D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFMEM-FVGVGASR-VRTLFDEA 253


>gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|212637911|ref|YP_002314431.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
 gi|212559391|gb|ACJ32446.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
          Length = 627

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|115391201|ref|XP_001213105.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
 gi|114194029|gb|EAU35729.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
          Length = 824

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 389 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 445


>gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|327353808|gb|EGE82665.1| cell division protease ftsH [Ajellomyces dermatitidis ATCC 18188]
          Length = 804

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 372 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 428


>gi|312281735|dbj|BAJ33733.1| unnamed protein product [Thellungiella halophila]
          Length = 717

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 315


>gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
 gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
          Length = 551

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI YVG   ++ +R+L   A
Sbjct: 329 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFTAA 385


>gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 615

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 199 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 255


>gi|17865463|sp|Q9BAE0|FTSH_MEDSA RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|13183728|gb|AAK15322.1|AF332134_1 FtsH protease [Medicago sativa]
          Length = 706

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 285 IPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 341


>gi|261191725|ref|XP_002622270.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239589586|gb|EEQ72229.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239608671|gb|EEQ85658.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           ER-3]
          Length = 807

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 375 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 431


>gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|114568747|ref|YP_755427.1| ATP-dependent metalloprotease FtsH [Maricaulis maris MCS10]
 gi|114339209|gb|ABI64489.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT  +R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 MPKGILLVGPPGTGKTLFARAMAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEKA 246


>gi|254560086|ref|YP_003067181.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
 gi|254267364|emb|CAX23199.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
          Length = 620

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252


>gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
 gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
          Length = 710

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 255 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311


>gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
 gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
          Length = 635

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250


>gi|75906798|ref|YP_321094.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75700523|gb|ABA20199.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|32266378|ref|NP_860410.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
 gi|32262428|gb|AAP77476.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
          Length = 562

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT I++ +A  AG PF     + F +I YVG   +++
Sbjct: 195 LPKGVLLVGPPGVGKTMIAKAVAGEAGVPFFYQSGSSFVQI-YVGMGAKRV 244


>gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis
           OL]
 gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis
           OL]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 202 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGIGASR-VRDLFDQA 258


>gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|225181447|ref|ZP_03734890.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
 gi|225167845|gb|EEG76653.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
          Length = 652

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 185 IPKGVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 241


>gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 202 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGIGASR-VRDLFDQA 258


>gi|119510170|ref|ZP_01629309.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119465231|gb|EAW46129.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 291

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 9/78 (11%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A 
Sbjct: 208 IPKGVLLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFIEL-FVGVGASR-VRDLFDQAK 265

Query: 111 ------INIVRESRRDEV 122
                 + I R++RR  +
Sbjct: 266 QQAPCIVFIDRKTRRKPL 283


>gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
          Length = 728

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D  R V   L+N  + Q L   +     PK +LLVGP G GKT +++ +A  AG PF  +
Sbjct: 261 DEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 315

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             + F E+ +VG    + +RD+   A+N
Sbjct: 316 SGSDFVEM-FVGVGAAR-VRDMFTQAVN 341


>gi|319938337|ref|ZP_08012733.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1]
 gi|319806520|gb|EFW03182.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1]
          Length = 574

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRN--RWRRQQLPADLRDELMPKNILL 58
           M LT +FS + +  ++ + IIGQ  A   +  +L +  ++   Q P+ +         LL
Sbjct: 317 MSLTTSFSYQNLEEQMKQEIIGQDKAIHTIVESLESLSQYPHPQKPSGI--------YLL 368

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           VG +G+GKT  ++ LA+L    F+K+++++++E   V +
Sbjct: 369 VGGSGIGKTQTAKSLAKLLNRNFVKLDMSEYSEPSSVSK 407


>gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414]
 gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414]
          Length = 612

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum]
          Length = 714

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 257 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 313


>gi|327537415|gb|EGF24144.1| cell division protein FtsH [Rhodopirellula baltica WH47]
          Length = 728

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D  R V   L+N  + Q L   +     PK +LLVGP G GKT +++ +A  AG PF  +
Sbjct: 261 DEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 315

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             + F E+ +VG    + +RD+   A+N
Sbjct: 316 SGSDFVEM-FVGVGAAR-VRDMFTQAVN 341


>gi|225682684|gb|EEH20968.1| cell division protease ftsH [Paracoccidioides brasiliensis Pb03]
          Length = 541

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 105 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 161


>gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
 gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
          Length = 631

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+  LLVGP G GKT I++ +A  AG PF ++  ++F E+ +VGR   + +RDL   A
Sbjct: 206 PRGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAK-VRDLFKQA 261


>gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
 gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|86157216|ref|YP_464001.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773727|gb|ABC80564.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 760

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++    R  L +    E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIEAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LAR+ G  F++ ++T++ E   V R
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533


>gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|125526519|gb|EAY74633.1| hypothetical protein OsI_02522 [Oryza sativa Indica Group]
          Length = 709

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 255 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311


>gi|2077957|emb|CAA73318.1| ATPase [Arabidopsis thaliana]
          Length = 634

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 226 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 282


>gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 617

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator]
          Length = 776

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V   +F EI  VG+   + +RDL   A
Sbjct: 355 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 411


>gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 613

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|91786625|ref|YP_547577.1| FtsH-2 peptidase [Polaromonas sp. JS666]
 gi|91695850|gb|ABE42679.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 609

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGGGAAR-VRDLFEQA 248


>gi|332297160|ref|YP_004439082.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema
           brennaborense DSM 12168]
 gi|332180263|gb|AEE15951.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema
           brennaborense DSM 12168]
          Length = 863

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTA 68
           R + S L+R I GQ +A   V  A++ R R     A LRD +    N L  GPTGVGKT 
Sbjct: 537 RNLESVLEREIFGQDEAVSLVVQAVK-RSR-----AGLRDPDKTAANFLFAGPTGVGKTE 590

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R LA+  G P ++ +++++ E   V R
Sbjct: 591 LARALAQSLGMPLLRFDMSEYQEKHTVSR 619


>gi|323491004|ref|ZP_08096198.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
 gi|323395360|gb|EGA88212.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
          Length = 672

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256


>gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|297852714|ref|XP_002894238.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340080|gb|EFH70497.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 720

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 298 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 354


>gi|224065699|ref|XP_002301927.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
 gi|222843653|gb|EEE81200.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
          Length = 704

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338


>gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 616

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|168007929|ref|XP_001756660.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692256|gb|EDQ78614.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 677

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 225 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFSAA 281


>gi|115437800|ref|NP_001043384.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|75272532|sp|Q8LQJ9|FTSH4_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=OsFTSH4; Flags: Precursor
 gi|20521391|dbj|BAB91902.1| cell division protein-like [Oryza sativa Japonica Group]
 gi|113532915|dbj|BAF05298.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|125570900|gb|EAZ12415.1| hypothetical protein OsJ_02305 [Oryza sativa Japonica Group]
          Length = 709

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 255 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311


>gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta]
          Length = 723

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V   +F EI  VG+   + +RDL   A
Sbjct: 319 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 375


>gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 675

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 575

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP G GKT +++ +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 320 LPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEM-FVGRGAAR-VRDL 372


>gi|308081381|ref|NP_001183829.1| hypothetical protein LOC100502422 [Zea mays]
 gi|238014784|gb|ACR38427.1| unknown [Zea mays]
          Length = 475

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 53  IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 109


>gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior]
          Length = 749

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  V   +F EI  VG+   + +RDL   A
Sbjct: 340 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 396


>gi|302849390|ref|XP_002956225.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
 gi|300258528|gb|EFJ42764.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 215 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEV-FVGVGARR-VRDLFTAA 271


>gi|240172853|ref|ZP_04751512.1| membrane-bound protease [Mycobacterium kansasii ATCC 12478]
          Length = 746

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPGRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 236 FVGVGASR-VRDLFDQA 251


>gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q++ A     + PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ 
Sbjct: 187 LHNPQKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM- 240

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 241 FVGMGASK-VRDLFKQA 256


>gi|22297675|ref|NP_680922.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22293852|dbj|BAC07684.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 612

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|18422193|ref|NP_568604.1| VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865467|sp|Q9FH02|FTSH5_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           chloroplastic; Short=AtFTSH5; AltName: Full=Protein
           VARIEGATED 1; Flags: Precursor
 gi|10177012|dbj|BAB10200.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|22022513|gb|AAM83215.1| AT5g42270/K5J14_7 [Arabidopsis thaliana]
 gi|332007407|gb|AED94790.1| cell division protease ftsH-5 [Arabidopsis thaliana]
          Length = 704

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338


>gi|332187792|ref|ZP_08389526.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas
           sp. S17]
 gi|332012142|gb|EGI54213.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas
           sp. S17]
          Length = 772

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++R+
Sbjct: 461 TDLKRVVFGQNAAIENLSSAIKLSR------AGLRDPDKPIGNYLFTGPTGVGKTEVARQ 514

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA + G P  + +++++ E            GYVG +   ++ D VD
Sbjct: 515 LATILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561


>gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 625

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           +TF  S  +I +E +     R + GQ++AK A+   + +     Q  AD+   L PK  L
Sbjct: 158 MTFGKSNPKIYAESETGKTFRDVAGQEEAKEALK-EIVDFLHNPQKYADIGASL-PKGAL 215

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 216 LVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 266


>gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
 gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
          Length = 768

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 239 FVGVGASR-VRDMFDQA 254


>gi|297795319|ref|XP_002865544.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311379|gb|EFH41803.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 701

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 279 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 335


>gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 658

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 181 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 237


>gi|17865457|sp|O82150|FTSH_TOBAC RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; AltName: Full=DS9; Flags: Precursor
 gi|5804782|dbj|BAA33755.2| chloroplast FtsH protease [Nicotiana tabacum]
          Length = 714

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 285 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 341


>gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046]
          Length = 679

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257


>gi|222424562|dbj|BAH20236.1| AT5G42270 [Arabidopsis thaliana]
          Length = 510

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 88  IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 144


>gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905]
 gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905]
          Length = 660

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 181 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 237


>gi|18402995|ref|NP_564563.1| FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865766|sp|Q39102|FTSH1_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 1,
           chloroplastic; Short=AtFTSH1; Flags: Precursor
 gi|5734790|gb|AAD50055.1|AC007980_20 ATP-dependent metalloprotease [Arabidopsis thaliana]
 gi|20268684|gb|AAM14046.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|21689847|gb|AAM67567.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|332194407|gb|AEE32528.1| cell division protease ftsH-1 [Arabidopsis thaliana]
          Length = 716

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 294 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 350


>gi|315924893|ref|ZP_07921110.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621792|gb|EFV01756.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 678

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 186 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFDSA 242


>gi|189191032|ref|XP_001931855.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973461|gb|EDU40960.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 784

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 342 LPKGVLLVGPPGTGKTLLARACAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTAA 398


>gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
 gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
          Length = 629

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK  +A     L N  + +++ A      MPK ILLVGP G GKT +++ +A  
Sbjct: 193 VAGEDEAKENLAEIVEYLHNPGKYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVAGE 247

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 248 ANVPFFSMSGSEFVEM-FVGMGASK-VRDLFQQA 279


>gi|302753920|ref|XP_002960384.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
 gi|302767824|ref|XP_002967332.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300165323|gb|EFJ31931.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300171323|gb|EFJ37923.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
          Length = 628

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 262


>gi|225559825|gb|EEH08107.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           G186AR]
          Length = 822

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 390 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 446


>gi|148553054|ref|YP_001260636.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas
           wittichii RW1]
 gi|148498244|gb|ABQ66498.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas
           wittichii RW1]
          Length = 771

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++R+
Sbjct: 461 TDLKRVVFGQDKAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 514

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA + G P  + +++++ E            GYVG +   ++ D VD
Sbjct: 515 LASILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561


>gi|240276299|gb|EER39811.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           H143]
          Length = 818

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 386 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 442


>gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
 gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
          Length = 622

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 255


>gi|224031915|gb|ACN35033.1| unknown [Zea mays]
          Length = 463

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 53  IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 109


>gi|238601601|ref|XP_002395453.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553]
 gi|215466220|gb|EEB96383.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553]
          Length = 74

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GPTG GKT + + LA++   PF   + T FT+ GYVG +VE  I+ L+  A
Sbjct: 1   GPTGSGKTLLVKTLAKVLDVPFSVSDATSFTQAGYVGEDVEMAIQRLLQAA 51


>gi|325089842|gb|EGC43152.1| intermembrane space AAA protease [Ajellomyces capsulatus H88]
          Length = 818

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L + A
Sbjct: 386 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 442


>gi|227202564|dbj|BAH56755.1| AT5G42270 [Arabidopsis thaliana]
          Length = 574

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338


>gi|220907269|ref|YP_002482580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219863880|gb|ACL44219.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 612

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|23097534|ref|NP_691000.1| cell division protein [Oceanobacillus iheyensis HTE831]
 gi|22775757|dbj|BAC12035.1| cell division protein (general stress protein) [Oceanobacillus
           iheyensis HTE831]
          Length = 675

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 251


>gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 453

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 191 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEM-FVGVGASR-VRDMFDQA 247


>gi|254294359|ref|YP_003060382.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hirschia
           baltica ATCC 49814]
 gi|254042890|gb|ACT59685.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hirschia
           baltica ATCC 49814]
          Length = 769

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + I ++L R + GQ DA  AV+ A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 454 KSISADLKRVVYGQDDAIAAVSDAIK------LARAGLREANKPIGSYLFSGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++R+LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 508 VARQLASILGVELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDGVDQHPHCV 564


>gi|169144773|gb|ACA49157.1| ATP-dependent protease ClpX ATP-binding subunit [Allochromatium
           vinosum DSM 180]
          Length = 116

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L+++   LILT+ +  L+ QY  L + EG+ L+  +D++  ++  A+   + 
Sbjct: 1   PVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDALREISRKAMERKT- 59

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
               GAR L+T+ME+VL D  +    +     VVIDA  +
Sbjct: 60  ----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVI 95


>gi|73663554|ref|YP_302335.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72496069|dbj|BAE19390.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254


>gi|282882499|ref|ZP_06291120.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B]
 gi|300814614|ref|ZP_07094865.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|281297641|gb|EFA90116.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B]
 gi|300511233|gb|EFK38482.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 645

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFEAA 251


>gi|302141673|emb|CBI18876.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 141 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 197


>gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 578

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 183 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYTSGSEFEEV-FVGVGARR-VRDLFAAA 239


>gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
 gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
          Length = 618

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 178 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEV-FVGVGARR-VRDLFTAA 234


>gi|320161491|ref|YP_004174715.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
 gi|319995344|dbj|BAJ64115.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
          Length = 623

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I++ ++  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 196 IPKGVLLVGPPGTGKTLIAKAVSGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252


>gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 646

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 16  LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK   R V   L+   +  QL A +     PK +LL GP G GKT +++ 
Sbjct: 152 LFRDVAGADEAKQELREVVEFLKAPQKYNQLGAKI-----PKGVLLYGPPGTGKTLLAKA 206

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 207 VAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 242


>gi|147797811|emb|CAN74077.1| hypothetical protein VITISV_000978 [Vitis vinifera]
          Length = 663

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 274 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 330


>gi|323139857|ref|ZP_08074887.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394884|gb|EFX97455.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILLVGP G GKT ++R +A  AG PF+ +  ++F E+ +VG    + +RDL
Sbjct: 192 IPKGILLVGPPGTGKTLLARAVAGEAGVPFLSITGSEFVEM-FVGVGAAR-VRDL 244


>gi|315186428|gb|EFU20188.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Spirochaeta
           thermophila DSM 6578]
          Length = 758

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  EL   + GQ +A  AV  A+   R  +RR   P          + L VGPTGVGK
Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAIKRARAGFRRPDKPV--------ASFLFVGPTGVGK 503

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R LA + G P ++ +++++ E   V R
Sbjct: 504 TELARSLADIMGVPLLRFDMSEYQEKHTVSR 534


>gi|307718943|ref|YP_003874475.1| ClpA-like protein [Spirochaeta thermophila DSM 6192]
 gi|306532668|gb|ADN02202.1| ClpA-like protein [Spirochaeta thermophila DSM 6192]
          Length = 758

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  EL   + GQ +A  AV  A+   R  +RR   P          + L VGPTGVGK
Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAIKRARAGFRRPDKPV--------ASFLFVGPTGVGK 503

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R LA + G P ++ +++++ E   V R
Sbjct: 504 TELARSLADIMGVPLLRFDMSEYQEKHTVSR 534


>gi|297624945|ref|YP_003706379.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297166125|gb|ADI15836.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 665

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF+ V  ++F E+ +VG    + +R+L + A
Sbjct: 195 IPKGMLLVGPPGTGKTLLARAVAGEAGVPFLTVSASEFMEM-FVGVGASR-VRNLFEEA 251


>gi|160894591|ref|ZP_02075367.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
 gi|156863902|gb|EDO57333.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 214 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDEA 270


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP G GKT +++ +A  AG PF  V  ++F E+ +VGR   + +RDL
Sbjct: 96  LPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEM-FVGRGAAR-VRDL 148


>gi|225459844|ref|XP_002285925.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 706

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 284 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 340


>gi|115470052|ref|NP_001058625.1| Os06g0725900 [Oryza sativa Japonica Group]
 gi|75321991|sp|Q5Z974|FTSH1_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 1,
           chloroplastic; Short=OsFTSH1; Flags: Precursor
 gi|54291028|dbj|BAD61706.1| putative chloroplast FtsH protease [Oryza sativa Japonica Group]
 gi|113596665|dbj|BAF20539.1| Os06g0725900 [Oryza sativa Japonica Group]
 gi|215694335|dbj|BAG89328.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 264 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 320


>gi|317126811|ref|YP_004093093.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
 gi|315471759|gb|ADU28362.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
          Length = 680

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 256


>gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I++ +A  AG  F+ +  + F E+ YVG    + +RDL D A
Sbjct: 220 IPKGVLLVGPPGTGKTLIAKAVAGEAGVHFLSISGSDFVEL-YVGVGASR-VRDLFDQA 276


>gi|218198909|gb|EEC81336.1| hypothetical protein OsI_24516 [Oryza sativa Indica Group]
          Length = 630

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 208 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 264


>gi|121708056|ref|XP_001272015.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
 gi|119400163|gb|EAW10589.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
          Length = 789

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 353 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFSQA 409


>gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L +  R Q + A      MPK +LLVGP G GKT +++ +A  
Sbjct: 169 VAGQDEAKEALQEIVSFLHDPSRYQAIGAT-----MPKGVLLVGPPGTGKTLLAKAVAGE 223

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 224 AKVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 255


>gi|237751691|ref|ZP_04582171.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
 gi|229373057|gb|EEO23448.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
          Length = 584

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP GVGKT I++ +A  +G PF     + F ++ YVG   ++ +RDL
Sbjct: 216 LPKGVLLVGPPGVGKTMIAKAIAGESGVPFFYHSGSSFVQV-YVGVGAQR-VRDL 268


>gi|125598556|gb|EAZ38336.1| hypothetical protein OsJ_22711 [Oryza sativa Japonica Group]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 264 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 320


>gi|255088145|ref|XP_002505995.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
 gi|226521266|gb|ACO67253.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
          Length = 718

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  QL A +     PK  LLVGP G GKT +++ +A  AG PF     ++F E+ 
Sbjct: 270 LKNPDKYTQLGAKI-----PKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEL- 323

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 324 FVGVGASR-VRDLFEKA 339


>gi|238605865|ref|XP_002396565.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553]
 gi|215469372|gb|EEB97495.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553]
          Length = 140

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P    L  L   D R ILT+ + +L+ QY+ L    G+ + FT  +ID +   A    
Sbjct: 8   RLPSITSLAPLTIPDLRRILTEVKGSLLSQYQALFGYSGVEIRFTSSAIDEICRKASEKG 67

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
                 GAR L+ +ME++L +  +       + V+I  E VR
Sbjct: 68  G-----GARGLRGIMEKILLEPMYEVPGSDIRHVLITEEVVR 104


>gi|209524573|ref|ZP_03273121.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495031|gb|EDZ95338.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 621

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253


>gi|164687436|ref|ZP_02211464.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
 gi|164603210|gb|EDQ96675.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
          Length = 666

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  + +++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 174 VAGQDEAKEALTEIVDFLHNPKKYEEIGA-----TMPKGALLVGPPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 229 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 260


>gi|220910286|ref|YP_002485597.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866897|gb|ACL47236.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 623

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ 
Sbjct: 187 LKNPQRYSQIGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL- 240

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 241 FVGVGSAR-VRDLFEQA 256


>gi|312220414|emb|CBY00355.1| similar to intermembrane space AAA protease IAP-1 [Leptosphaeria
           maculans]
          Length = 772

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 332 LPKGVLLIGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTAA 388


>gi|290997828|ref|XP_002681483.1| aaa ATPase family protein [Naegleria gruberi]
 gi|284095107|gb|EFC48739.1| aaa ATPase family protein [Naegleria gruberi]
          Length = 948

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 25/152 (16%)

Query: 44  PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNV 99
           P   RD    +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E  +G     V
Sbjct: 488 PKKFRDIGARIPKGALLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPARV 547

Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASI-----------NAEERILDALVGKT------ 142
            ++ ++  D A +I+     D V  Q              N   ++L  + G T      
Sbjct: 548 RKLFKEAKDNAPSIIFIDEIDAVGRQRGTGKFMGRNDERENTLNQLLVEMDGFTPATGVV 607

Query: 143 --ATSNTREVFRKKL-RDGEISDKEIDIEVAD 171
             A +N  E+  K L R G   D+ ID+ +AD
Sbjct: 608 VLAATNRSEILDKALTRPGRF-DRSIDVSIAD 638


>gi|120553945|ref|YP_958296.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|310943138|sp|A1TZE0|FTSH_MARAV RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|120323794|gb|ABM18109.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
          Length = 633

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RD+   A
Sbjct: 217 VMPKGVLLVGPPGTGKTLLARAIAGEAEVPFFSISASEFIEM-FVGVGAAR-VRDMFQTA 274


>gi|291566002|dbj|BAI88274.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 621

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253


>gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 700

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 714

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    + +RDL D A
Sbjct: 245 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEM-YVGVGASR-VRDLFDKA 301


>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
 gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I++ +A  AG PF+++  ++     Y+G    Q++RDL ++A
Sbjct: 200 PKGVLLYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVH-KYIGEGA-QLVRDLFEMA 255


>gi|332970938|gb|EGK09912.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 249


>gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 704

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
 gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
          Length = 645

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 195 MPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGMGASR-VRDLFKQA 251


>gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 584

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    + +RDL + A
Sbjct: 167 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVEL-FVGVGASR-VRDLFEKA 223


>gi|332704015|ref|ZP_08424103.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554164|gb|EGJ51208.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 769

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ +EL   + GQ  A  ++A +++ R R     A L +E  P  N LL+GPTGVGKT 
Sbjct: 444 KDLDNELKGRVFGQDQAVDSIARSIK-RSR-----AGLGNETRPLGNFLLIGPTGVGKTE 497

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA + G  F++ +++++ E   V R
Sbjct: 498 LAKQLAEVMGVKFLRYDMSEYMEKHAVAR 526


>gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 704

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|295395571|ref|ZP_06805765.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971590|gb|EFG47471.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 727

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ++L GP G GKT ++R +A  AG PF  +  + F E+ YVG    + +RDL + A 
Sbjct: 223 IPKGVMLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASR-VRDLFEQAK 280

Query: 112 N 112
           N
Sbjct: 281 N 281


>gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 617

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ++AK ++      L++  +  ++ A      MPK  LLVGP G GKT +++ +A
Sbjct: 167 RDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQ-----MPKGALLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 222 GEANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 255


>gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 700

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AGAPF  +  + F E+ +VG    + +RDL   A
Sbjct: 225 LPKGVLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 281


>gi|145350390|ref|XP_001419590.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579822|gb|ABO97883.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 651

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I++ +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 217 IPKGCLLVGPPGTGKTLIAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 273


>gi|320451085|ref|YP_004203181.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151254|gb|ADW22632.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 627

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP GVGKT I+R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGVGKTHIARAVAGEAKVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244


>gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PFI +  ++F E+ +VG    + +RDL   A
Sbjct: 204 MPKGILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEM-FVGMGASK-VRDLFKKA 260


>gi|281207472|gb|EFA81655.1| Putative FtsH protease [Polysphondylium pallidum PN500]
          Length = 791

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           R+ ++PK ILLVGP G GKT +++ LA  A  PF+ +  ++F E+ ++G   ++ +RDL 
Sbjct: 272 RNIVIPKGILLVGPPGTGKTLLAKALAGEARIPFLTINGSEFEEM-FIGVGAKR-VRDLF 329

Query: 108 DVA 110
           + A
Sbjct: 330 ETA 332


>gi|114769424|ref|ZP_01447050.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255]
 gi|114550341|gb|EAU53222.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255]
          Length = 771

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           RE+ + L R + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 458 RELDASLKRVVFGQDPAIDALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   I+ +++++ E            GYVG +   ++ D VD
Sbjct: 512 VAKQLADTLGVELIRFDMSEYMEKHAISRLIGAPPGYVGFDQGGLLTDGVD 562


>gi|159899548|ref|YP_001545795.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892587|gb|ABX05667.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 651

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +SR +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 221 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 277


>gi|319790336|ref|YP_004151969.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1]
 gi|317114838|gb|ADU97328.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1]
          Length = 631

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + QQL   +     PK +LL GP G GKT +++ +A  A  PF+ V  ++F E+ 
Sbjct: 176 LKNPKKYQQLGGRI-----PKGVLLAGPPGTGKTLLAKAIAGEANVPFLSVSGSEFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 230 FVGVGASR-VRDLFDQA 245


>gi|302791427|ref|XP_002977480.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii]
 gi|300154850|gb|EFJ21484.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 233 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 289


>gi|254825866|ref|ZP_05230867.1| FtsH [Listeria monocytogenes FSL J1-194]
 gi|293595105|gb|EFG02866.1| FtsH [Listeria monocytogenes FSL J1-194]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|83593444|ref|YP_427196.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576358|gb|ABC22909.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 779

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT ++R+L
Sbjct: 462 DLKTMVFGQDQAIEALASAIKLAR------AGLREPTKPIGNYLFSGPTGVGKTEVARQL 515

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           AR+ G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 ARILGIELVRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAVDQQPHCV 567


>gi|307243201|ref|ZP_07525374.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493462|gb|EFM65442.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 680

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +S+ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGILMVGPPGTGKTYLSKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|315274601|ref|ZP_07869471.1| putative cell division protease [Listeria marthii FSL S4-120]
 gi|313615771|gb|EFR89029.1| putative cell division protease [Listeria marthii FSL S4-120]
          Length = 270

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|152992606|ref|YP_001358327.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
 gi|151424467|dbj|BAF71970.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
          Length = 557

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT IS+ +A  AG PF       F  I YVG   +++
Sbjct: 191 LPKGVLLVGPPGVGKTLISKAVAGEAGVPFFYQSGASFVHI-YVGMGAKRV 240


>gi|113955040|ref|YP_730039.1| cell division protein FtsH3 [Synechococcus sp. CC9311]
 gi|113882391|gb|ABI47349.1| cell division protein FtsH3 [Synechococcus sp. CC9311]
          Length = 632

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 208 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 264


>gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4]
 gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           pseudofirmus OF4]
          Length = 679

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254


>gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
 gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|226222849|ref|YP_002756956.1| cell division protein ftsH [Listeria monocytogenes Clip81459]
 gi|225875311|emb|CAS04008.1| Putative cell division protein ftsH [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 695

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
 gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
          Length = 690

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257


>gi|308807935|ref|XP_003081278.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast
           precursor (ISS) [Ostreococcus tauri]
 gi|116059740|emb|CAL55447.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast
           precursor (ISS) [Ostreococcus tauri]
          Length = 662

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I++ +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 221 IPKGCLLVGPPGTGKTLIAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 277


>gi|254933060|ref|ZP_05266419.1| FtsH [Listeria monocytogenes HPB2262]
 gi|254992585|ref|ZP_05274775.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           J2-064]
 gi|21667250|gb|AAM74002.1|AF467001_3 FtsH [Listeria monocytogenes]
 gi|293584618|gb|EFF96650.1| FtsH [Listeria monocytogenes HPB2262]
          Length = 687

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
 gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
          Length = 662

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253


>gi|46906452|ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093162|ref|ZP_00230937.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|46879716|gb|AAT03018.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47018469|gb|EAL09227.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|328467976|gb|EGF39003.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes 1816]
 gi|332310629|gb|EGJ23724.1| ATP-dependent zinc metalloprotease FtsH [Listeria monocytogenes
           str. Scott A]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|302780769|ref|XP_002972159.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii]
 gi|300160458|gb|EFJ27076.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii]
          Length = 669

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 218 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 274


>gi|296166676|ref|ZP_06849101.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897941|gb|EFG77522.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 794

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|254977185|ref|ZP_05273657.1| cell division protein [Clostridium difficile QCD-66c26]
 gi|255094514|ref|ZP_05323992.1| cell division protein [Clostridium difficile CIP 107932]
 gi|255102771|ref|ZP_05331748.1| cell division protein [Clostridium difficile QCD-63q42]
 gi|255308592|ref|ZP_05352763.1| cell division protein [Clostridium difficile ATCC 43255]
 gi|255316266|ref|ZP_05357849.1| cell division protein [Clostridium difficile QCD-76w55]
 gi|255518927|ref|ZP_05386603.1| cell division protein [Clostridium difficile QCD-97b34]
 gi|255652106|ref|ZP_05399008.1| cell division protein [Clostridium difficile QCD-37x79]
 gi|255657509|ref|ZP_05402918.1| cell division protein [Clostridium difficile QCD-23m63]
 gi|306521840|ref|ZP_07408187.1| cell division protein [Clostridium difficile QCD-32g58]
          Length = 656

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
 gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
          Length = 657

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 247


>gi|322822382|gb|EFZ28450.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342


>gi|255024485|ref|ZP_05296471.1| cell division protein FtsH [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 168 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 224


>gi|218458415|ref|ZP_03498506.1| cell division protein ftsH (ATP-dependent zinc-metallo protease)
           [Rhizobium etli Kim 5]
          Length = 192

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  AG P+  +  ++F E+ +VG    + +RDL + A
Sbjct: 66  MPKGVLLVGPPGTGKTLLAKAVAGEAGVPYFSISGSEFVEM-FVGVGAAR-VRDLFEQA 122


>gi|168044454|ref|XP_001774696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673996|gb|EDQ60511.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 687

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 235 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 291


>gi|326494184|dbj|BAJ90361.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF     + F E+ YVG   ++ +R+L   A
Sbjct: 136 LPKGVLLMGPPGTGKTMLARAVAGEAGVPFCACSGSDFEEV-YVGLGAKR-VRELFQSA 192


>gi|156084264|ref|XP_001609615.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
 gi|154796867|gb|EDO06047.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
          Length = 706

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A L     PK ILL GP G GKT ++R +A  AG PFI+   ++F E+ 
Sbjct: 253 LKNPEKFERLGAKL-----PKGILLSGPPGTGKTLLARAIAGEAGVPFIQASGSEFEEM- 306

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + IR+L  +A
Sbjct: 307 FVGVGARR-IRELFALA 322


>gi|116073248|ref|ZP_01470510.1| Peptidase M41, FtsH [Synechococcus sp. RS9916]
 gi|116068553|gb|EAU74305.1| Peptidase M41, FtsH [Synechococcus sp. RS9916]
          Length = 621

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259


>gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus]
          Length = 679

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254


>gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
 gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK+    V   L+N  +  QL   L     PK +LLVGP G G
Sbjct: 267 PEEIHVTFDD-VKGADEAKQELKDVVEFLKNPDKFSQLGGKL-----PKGVLLVGPPGTG 320

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  AG PF      +F EI  VG+   + +RDL   A
Sbjct: 321 KTLLARAVAGEAGVPFFHAAGPEFDEI-LVGQGARR-VRDLFKSA 363


>gi|16799329|ref|NP_469597.1| hypothetical protein lin0252 [Listeria innocua Clip11262]
 gi|16412681|emb|CAC95485.1| ftsH [Listeria innocua Clip11262]
          Length = 690

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 249


>gi|323456556|gb|EGB12423.1| hypothetical protein AURANDRAFT_52218 [Aureococcus anophagefferens]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT ++R +A  AG PF     ++F E+ YVG    + +RDL + A
Sbjct: 301 LPKGCLLMGPPGTGKTLLARAIAGEAGVPFFYASGSEFEEM-YVGVGARR-VRDLFEAA 357


>gi|299820645|ref|ZP_07052534.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
 gi|299817666|gb|EFI84901.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
          Length = 687

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 266


>gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
 gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
 gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|220915955|ref|YP_002491259.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953809|gb|ACL64193.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++    R  L +    E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LAR+ G  F++ ++T++ E   V R
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533


>gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 256


>gi|254854450|ref|ZP_05243798.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300766353|ref|ZP_07076312.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
 gi|258607850|gb|EEW20458.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300512952|gb|EFK40040.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88]
 gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger]
          Length = 803

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 370 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 426


>gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|217965694|ref|YP_002351372.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|217334964|gb|ACK40758.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|307569759|emb|CAR82938.1| ATP-dependent metalloprotease [Listeria monocytogenes L99]
          Length = 690

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|164424835|ref|XP_963250.2| hypothetical protein NCU05427 [Neurospora crassa OR74A]
 gi|157070682|gb|EAA34014.2| hypothetical protein NCU05427 [Neurospora crassa OR74A]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +GIV LDEFDKI  R++ NG  V  EGVQ+ LL LVEG+ V+
Sbjct: 61  HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 102



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           ++ PADL     +PE+ GR      L  L+  +   ILT+  ++L+ QY  L +T    L
Sbjct: 232 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 291

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            FT  ++ A+A+ A        + GAR L+  MERVL +  + A
Sbjct: 292 YFTRKALYAIAERAAK-----NETGARGLKMEMERVLAEPMYDA 330


>gi|295702308|ref|YP_003595383.1| cell division protease FtsH [Bacillus megaterium DSM 319]
 gi|294799967|gb|ADF37033.1| cell division protease FtsH [Bacillus megaterium DSM 319]
          Length = 636

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252


>gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|197121251|ref|YP_002133202.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Anaeromyxobacter sp. K]
 gi|196171100|gb|ACG72073.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. K]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++    R  L +    E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LAR+ G  F++ ++T++ E   V R
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533


>gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258


>gi|291166566|gb|EFE28612.1| ATP-dependent metalloprotease FtsH [Filifactor alocis ATCC 35896]
          Length = 666

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +S+ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGILMVGPPGTGKTYLSKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|289433575|ref|YP_003463447.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169819|emb|CBH26357.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 213 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 269


>gi|322420971|ref|YP_004200194.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320127358|gb|ADW14918.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 616

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 207 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISASAFIEM-FVGVGASR-VRDL 259


>gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
 gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
 gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
 gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A++     L N  + ++L A      MPK  LLVGP G GKT +++ +A  
Sbjct: 168 VAGQDEAKEALSEIVDFLHNPDKYKKLGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 222

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 223 ANVPFFSISGSEFVEM-FVGMGAAR-VRDLFKQA 254


>gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
 gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
          Length = 670

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|116871603|ref|YP_848384.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740481|emb|CAK19601.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|126701185|ref|YP_001090082.1| cell division protein [Clostridium difficile 630]
 gi|260685079|ref|YP_003216364.1| cell division protein [Clostridium difficile CD196]
 gi|260688737|ref|YP_003219871.1| cell division protein [Clostridium difficile R20291]
 gi|296452819|ref|ZP_06894506.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296879929|ref|ZP_06903901.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
 gi|115252622|emb|CAJ70465.1| Cell division protease FtsH2 [Clostridium difficile]
 gi|260211242|emb|CBA66769.1| cell division protein [Clostridium difficile CD196]
 gi|260214754|emb|CBE07450.1| cell division protein [Clostridium difficile R20291]
 gi|296258367|gb|EFH05275.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296429043|gb|EFH14918.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
          Length = 664

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|16802266|ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e]
 gi|224500329|ref|ZP_03668678.1| hypothetical protein LmonF1_11934 [Listeria monocytogenes Finland
           1988]
 gi|224503460|ref|ZP_03671767.1| hypothetical protein LmonFR_13282 [Listeria monocytogenes FSL
           R2-561]
 gi|254829311|ref|ZP_05233998.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|254832459|ref|ZP_05237114.1| hypothetical protein Lmon1_13976 [Listeria monocytogenes 10403S]
 gi|255028436|ref|ZP_05300387.1| hypothetical protein LmonL_03016 [Listeria monocytogenes LO28]
 gi|284803041|ref|YP_003414906.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284996182|ref|YP_003417950.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
 gi|16409585|emb|CAD00747.1| ftsH [Listeria monocytogenes EGD-e]
 gi|258601724|gb|EEW15049.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|284058603|gb|ADB69544.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284061649|gb|ADB72588.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171]
 gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|294496941|ref|YP_003560641.1| cell division protease FtsH [Bacillus megaterium QM B1551]
 gi|294346878|gb|ADE67207.1| cell division protease FtsH [Bacillus megaterium QM B1551]
          Length = 636

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252


>gi|290894272|ref|ZP_06557239.1| ftsH protein [Listeria monocytogenes FSL J2-071]
 gi|290556156|gb|EFD89703.1| ftsH protein [Listeria monocytogenes FSL J2-071]
          Length = 690

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|88809073|ref|ZP_01124582.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805]
 gi|88787015|gb|EAR18173.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805]
          Length = 625

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259


>gi|71420458|ref|XP_811493.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70876163|gb|EAN89642.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342


>gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|317144506|ref|XP_001820171.2| protein YME1 [Aspergillus oryzae RIB40]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 366 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 422


>gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 249


>gi|253576848|ref|ZP_04854173.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843715|gb|EES71738.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 709

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
 gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202


>gi|238486048|ref|XP_002374262.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
 gi|220699141|gb|EED55480.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
          Length = 624

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   +++
Sbjct: 185 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 234


>gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1]
 gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1]
          Length = 608

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 233


>gi|148240025|ref|YP_001225412.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848564|emb|CAK24115.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 625

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259


>gi|33152553|ref|NP_873906.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
 gi|33148777|gb|AAP96295.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
          Length = 639

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 241


>gi|89897277|ref|YP_520764.1| hypothetical protein DSY4531 [Desulfitobacterium hafniense Y51]
 gi|89336725|dbj|BAE86320.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 614

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ ++K A+A     L N  +  ++ A+L     PK  LLVGP G GKT +++ +A  
Sbjct: 176 VAGQDESKEALAEIIDFLHNPKKYSEIGANL-----PKGALLVGPPGTGKTLLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 231 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFQQA 262


>gi|83768030|dbj|BAE58169.1| unnamed protein product [Aspergillus oryzae]
          Length = 719

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 280 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 336


>gi|47097259|ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|254900995|ref|ZP_05260919.1| hypothetical protein LmonJ_14313 [Listeria monocytogenes J0161]
 gi|254913937|ref|ZP_05263949.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
 gi|254938273|ref|ZP_05269970.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|47014359|gb|EAL05332.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610883|gb|EEW23491.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|293591955|gb|EFG00290.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
          Length = 691

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|311694246|gb|ADP97119.1| cell division protein FtsH [marine bacterium HP15]
          Length = 637

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 9/70 (12%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RD+    
Sbjct: 221 VMPKGVLLVGPPGTGKTLLARAIAGEAEVPFYSISASEFIEM-FVGVGAAR-VRDM---- 274

Query: 111 INIVRESRRD 120
               +E+R+D
Sbjct: 275 ---FKEARKD 281


>gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 616

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 233


>gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
 gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
          Length = 582

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199


>gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
 gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
 gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
          Length = 612

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229


>gi|261403931|ref|YP_003240172.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|329925503|ref|ZP_08280377.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
 gi|261280394|gb|ACX62365.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|328939786|gb|EGG36126.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
          Length = 689

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
 gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|118473106|ref|YP_890326.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174393|gb|ABK75289.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
          Length = 770

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|71668170|ref|XP_821024.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70886390|gb|EAN99173.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342


>gi|302038231|ref|YP_003798553.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606295|emb|CBK42628.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 594

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 183 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 239


>gi|229917401|ref|YP_002886047.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
 gi|229468830|gb|ACQ70602.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
          Length = 674

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252


>gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202


>gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
 gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI]
 gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|183219658|ref|YP_001837654.1| cell division protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909795|ref|YP_001961350.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774471|gb|ABZ92772.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778080|gb|ABZ96378.1| Cell division protease; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 650

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 211 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 265


>gi|111021379|ref|YP_704351.1| cell division protein FtsH [Rhodococcus jostii RHA1]
 gi|110820909|gb|ABG96193.1| cell division protein FtsH [Rhodococcus jostii RHA1]
          Length = 756

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPMRYQSLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 239 FVGVGASR-VRDMFDQA 254


>gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH
           391-98]
          Length = 639

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|251794099|ref|YP_003008830.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
 gi|247541725|gb|ACS98743.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
          Length = 670

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|256082754|ref|XP_002577618.1| ATP-dependent clp protease ATP-binding subunit clpx [Schistosoma
           mansoni]
 gi|238662943|emb|CAZ33856.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Schistosoma mansoni]
          Length = 320

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GRFP+   L SLN+     +LT+  + LI QY+ L   +G  L  T  ++ A+A
Sbjct: 237 MIPEFVGRFPIITALHSLNEEMLVRVLTEPRNALIKQYQLLFNIDGCELRVTPGALKAIA 296

Query: 372 DVAVNLNSTVGDIGARRLQTVM 393
            +A++ ++     GAR L++V+
Sbjct: 297 RLALSQHT-----GARGLRSVL 313



 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 15/75 (20%)

Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVST-----------KYGS 290
           GIV LDE DKI ++ +G+ +    VS EGVQ+ +L L+EGS V+            +   
Sbjct: 86  GIVVLDEIDKISSK-TGHHLSTRDVSGEGVQQAMLKLLEGSVVNVPDVKSPRKLRGETFV 144

Query: 291 INTDHILFIASGAFH 305
           ++T +ILFIA GAF+
Sbjct: 145 VDTTNILFIACGAFN 159



 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGKT +++ LA     PF   + T  T+ GYVG +VE  I  L+  A
Sbjct: 30  VGKTLLAQTLAHYLNVPFALYDCTSITQAGYVGEDVESTIGRLLQNA 76


>gi|218295295|ref|ZP_03496131.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
 gi|218244498|gb|EED11023.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
          Length = 283

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  ++ A +     PK +LLVGP GVGKT I+R +A  A  PFI    + F E+ 
Sbjct: 175 LKNPGRFHEMGARI-----PKGVLLVGPPGVGKTHIARAVAGEARVPFITASGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 229 FVGVGAAR-VRDLFETA 244


>gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258


>gi|70993660|ref|XP_751677.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|66849311|gb|EAL89639.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|159125401|gb|EDP50518.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           A1163]
          Length = 799

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   +++
Sbjct: 363 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 412


>gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241]
 gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L]
 gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012]
 gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam]
 gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W]
 gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1]
 gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055]
 gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B]
 gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum]
 gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94]
 gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L]
 gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W]
 gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1]
 gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 229 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFAAA 285


>gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
 gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
          Length = 584

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199


>gi|159465357|ref|XP_001690889.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158279575|gb|EDP05335.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 727

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 292 IPKGCLLVGPPGTGKTLLAKAVAGEAGTPFFSCAASEFVEV-FVGVGASR-VRDLFEKA 348


>gi|103485664|ref|YP_615225.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98975741|gb|ABF51892.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 779

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++++
Sbjct: 461 TDLKRVVFGQNTAIEVLSSAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTEVAKQ 514

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA + G P  + +++++ E            GYVG +   ++ D +D
Sbjct: 515 LASIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAID 561


>gi|308182460|ref|YP_003926587.1| cell division protein (ftsH) [Helicobacter pylori PeCan4]
 gi|308064645|gb|ADO06537.1| cell division protein (ftsH) [Helicobacter pylori PeCan4]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|255521742|ref|ZP_05388979.1| cell division protein ftsH [Listeria monocytogenes FSL J1-175]
          Length = 400

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268


>gi|253681305|ref|ZP_04862103.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
 gi|253562543|gb|EES91994.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
          Length = 657

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
 gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202


>gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
 gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|300857286|ref|YP_003782270.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
 gi|300437401|gb|ADK17168.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
          Length = 602

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 249


>gi|257440207|ref|ZP_05615962.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium
           prausnitzii A2-165]
 gi|257197241|gb|EEU95525.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium
           prausnitzii A2-165]
          Length = 767

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           +EL + IIGQ DA   VA A++ R R     ADL     P + + VGPTGVGKT + ++L
Sbjct: 473 TELKKKIIGQDDAVHLVAQAVK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 526

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A        P I+++++++ E   V R +
Sbjct: 527 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 555


>gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257


>gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465]
 gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066]
 gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
 gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
          Length = 625

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
 gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
 gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|329948202|ref|ZP_08295074.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328522935|gb|EGF50040.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 692

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293


>gi|284053281|ref|ZP_06383491.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str.
           Paraca]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253


>gi|215424853|ref|ZP_03422772.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T92]
          Length = 755

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 177 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 231 FVGVGASR-VRDLFEQA 246


>gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
 gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
          Length = 662

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
 gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
          Length = 582

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199


>gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
 gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
          Length = 584

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           + V   LR   + Q L A      +PK +LL+GP G GKT +++ +A  +G PF+ +  +
Sbjct: 147 KEVITFLREPKKFQNLGAK-----VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISAS 201

Query: 88  KFTEIGYVGRNVEQIIRDLVDVA 110
           +F E+ +VG    + +RDL   A
Sbjct: 202 EFVEL-FVGVGASR-VRDLFSKA 222


>gi|15611341|ref|NP_222992.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|4154795|gb|AAD05852.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|307636980|gb|ADN79430.1| cell division protein [Helicobacter pylori 908]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|119222371|gb|ABL62383.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222373|gb|ABL62384.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222375|gb|ABL62385.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222377|gb|ABL62386.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222379|gb|ABL62387.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222381|gb|ABL62388.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 190

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 1   TGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 58



 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 59  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 118

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 119 DTTNILFICGGAF 131


>gi|15843222|ref|NP_338259.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|13883577|gb|AAK48073.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|323717718|gb|EGB26918.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CDC1551A]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 626

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257


>gi|325995572|gb|ADZ50977.1| Cell division protein [Helicobacter pylori 2018]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|268608651|ref|ZP_06142378.1| ATP-dependent metalloprotease FtsH [Ruminococcus flavefaciens FD-1]
          Length = 667

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + +++ A +     PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 186 LKNPSKYKEIGAKV-----PKGVLLLGPPGTGKTLLARAVAGEAGCPFFPISGSDFVEM- 239

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 240 FVGVGASR-VRDLFEQA 255


>gi|168187052|ref|ZP_02621687.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169295060|gb|EDS77193.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 657

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 629

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258


>gi|87125460|ref|ZP_01081305.1| Peptidase M41, FtsH [Synechococcus sp. RS9917]
 gi|86166760|gb|EAQ68022.1| Peptidase M41, FtsH [Synechococcus sp. RS9917]
          Length = 625

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 257


>gi|325997167|gb|ADZ49375.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|315644387|ref|ZP_07897527.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
 gi|315280264|gb|EFU43556.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
          Length = 689

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|306790883|ref|ZP_07429205.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|306795990|ref|ZP_07434292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|306801237|ref|ZP_07437905.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|306805451|ref|ZP_07442119.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|306969742|ref|ZP_07482403.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
 gi|308369172|ref|ZP_07416832.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308371396|ref|ZP_07424839.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308372684|ref|ZP_07429508.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308328489|gb|EFP17340.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308328904|gb|EFP17755.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308332742|gb|EFP21593.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|308340235|gb|EFP29086.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308343556|gb|EFP32407.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|308348024|gb|EFP36875.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|308351965|gb|EFP40816.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|308352751|gb|EFP41602.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|260202801|ref|ZP_05770292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289572264|ref|ZP_06452491.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289536695|gb|EFD41273.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|255322312|ref|ZP_05363458.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255300685|gb|EET79956.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 555

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT +++ +A  AG PF       F +I YVG   +++
Sbjct: 188 MPKGVLMVGPPGVGKTLVAKAVAGEAGVPFFYQSGASFVQI-YVGMGAKRV 237


>gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258


>gi|126695586|ref|YP_001090472.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
 gi|126542629|gb|ABO16871.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
          Length = 617

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
          Length = 614

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFEQA 248


>gi|15610746|ref|NP_218127.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           tuberculosis H37Rv]
 gi|31794786|ref|NP_857279.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           bovis AF2122/97]
 gi|121639529|ref|YP_979753.1| membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663474|ref|YP_001284997.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148824816|ref|YP_001289569.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|215405659|ref|ZP_03417840.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 02_1987]
 gi|215413533|ref|ZP_03422205.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215432584|ref|ZP_03430503.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis EAS054]
 gi|215447950|ref|ZP_03434702.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T85]
 gi|218755392|ref|ZP_03534188.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis GM 1503]
 gi|219559685|ref|ZP_03538761.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T17]
 gi|224992026|ref|YP_002646715.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800650|ref|YP_003033651.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233111|ref|ZP_04926437.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|254366165|ref|ZP_04982209.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552724|ref|ZP_05143171.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260184530|ref|ZP_05762004.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|260198654|ref|ZP_05766145.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289441041|ref|ZP_06430785.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289445204|ref|ZP_06434948.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555872|ref|ZP_06445082.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289571849|ref|ZP_06452076.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289747446|ref|ZP_06506824.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289748124|ref|ZP_06507502.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289755737|ref|ZP_06515115.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289759770|ref|ZP_06519148.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|289763788|ref|ZP_06523166.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294993728|ref|ZP_06799419.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis 210]
 gi|297636285|ref|ZP_06954065.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
 gi|297733279|ref|ZP_06962397.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN R506]
 gi|298527088|ref|ZP_07014497.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306974083|ref|ZP_07486744.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|307081791|ref|ZP_07490961.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|307086407|ref|ZP_07495520.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|313660609|ref|ZP_07817489.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN V2475]
 gi|61224305|sp|P0A4V9|FTSH_MYCBO RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158513773|sp|A5U8T5|FTSH_MYCTA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158517768|sp|P0C5C0|FTSH_MYCTU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2113966|emb|CAB08956.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|31620383|emb|CAD95826.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121495177|emb|CAL73663.1| Membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124602904|gb|EAY61179.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|134151677|gb|EBA43722.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507626|gb|ABQ75435.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148723343|gb|ABR07968.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|224775141|dbj|BAH27947.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322153|gb|ACT26756.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|289413960|gb|EFD11200.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289418162|gb|EFD15363.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440504|gb|EFD22997.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289545603|gb|EFD49251.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289687974|gb|EFD55462.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289688711|gb|EFD56140.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289696324|gb|EFD63753.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289711294|gb|EFD75310.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289715334|gb|EFD79346.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|298496882|gb|EFI32176.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308356600|gb|EFP45451.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|308360557|gb|EFP49408.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|308364173|gb|EFP53024.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|326905448|gb|EGE52381.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis W-148]
 gi|328460381|gb|AEB05804.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
          Length = 760

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 617

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A+      L N  + + + A+     MPK  LLVGP G GKT ++R +A  
Sbjct: 166 VAGQDEAKEALMELVDFLHNPGKYKDIGAN-----MPKGALLVGPPGTGKTLLARAVAGE 220

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 221 AKVPFFSISGSEFVEM-FVGMGAAR-VRDLFKQA 252


>gi|254416851|ref|ZP_05030600.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176397|gb|EDX71412.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 628

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 197 IPKGVLLVGPPGTGKTLLAKAVAGEAEVPFFSISASEFVEL-FVGTGAAR-VRDLFDQA 253


>gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
 gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
          Length = 605

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 44  PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           PA   D   LMPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    +
Sbjct: 187 PAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK 245

Query: 102 IIRDLVDVA 110
            +RDL   A
Sbjct: 246 -VRDLFKQA 253


>gi|304405792|ref|ZP_07387450.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
 gi|304345035|gb|EFM10871.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
          Length = 671

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254


>gi|87301141|ref|ZP_01083982.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87284109|gb|EAQ76062.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 626

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 257


>gi|320531218|ref|ZP_08032203.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136587|gb|EFW28550.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 688

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293


>gi|317010567|gb|ADU84314.1| cell division protein FtsH3 [Helicobacter pylori SouthAfrica7]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|266622121|ref|ZP_06115056.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288866171|gb|EFC98469.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 622

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 3   LTFNFSPREIVSELDRY-----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           +TF  S  +I +E +       + GQ++AK A+   + +     Q  AD+   L PK  L
Sbjct: 158 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALK-EIVDFLHNPQKYADIGASL-PKGAL 215

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 216 LVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 266


>gi|223039935|ref|ZP_03610218.1| putative Cell division protease FtsH homolog [Campylobacter rectus
           RM3267]
 gi|222878803|gb|EEF13901.1| putative Cell division protease FtsH homolog [Campylobacter rectus
           RM3267]
          Length = 555

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT +++ +A  AG PF       F +I YVG   +++
Sbjct: 188 MPKGVLMVGPPGVGKTLVAKAVAGEAGVPFFYQSGASFVQI-YVGMGAKRV 237


>gi|3426264|gb|AAC32257.1| cell division protein [Mycobacterium smegmatis]
          Length = 769

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|33866121|ref|NP_897680.1| cell division protein FtsH3 [Synechococcus sp. WH 8102]
 gi|33639096|emb|CAE08102.1| cell division protein FtsH3 [Synechococcus sp. WH 8102]
          Length = 624

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258


>gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 618

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VG    ++
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFMEM-FVGVGASRV 248


>gi|310639530|ref|YP_003944288.1| ATP-dependent metalloprotease ftsh [Paenibacillus polymyxa SC2]
 gi|309244480|gb|ADO54047.1| ATP-dependent metalloprotease FtsH [Paenibacillus polymyxa SC2]
          Length = 679

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|310828188|ref|YP_003960545.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
 gi|308739922|gb|ADO37582.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I  E +     + + GQ +AK A   +   L N  +   + A+L     PK
Sbjct: 152 MTFGKSNAKIYVEAETGKTFKDVAGQDEAKEALTEIVDFLHNPKKYADIGANL-----PK 206

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A +
Sbjct: 207 GALLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQATD 262


>gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
 gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
          Length = 677

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 218 VPKGILLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDMFQTA 274


>gi|289164075|ref|YP_003454213.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
 gi|288857248|emb|CBJ11073.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
          Length = 553

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 142 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDL 194


>gi|260886972|ref|ZP_05898235.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
 gi|260863034|gb|EEX77534.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
          Length = 670

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 252


>gi|239907008|ref|YP_002953749.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           magneticus RS-1]
 gi|239796874|dbj|BAH75863.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           magneticus RS-1]
          Length = 762

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71
            EL   + GQ DA  A+A A LR+R       A L +   P  + LL GPTGVGKT +++
Sbjct: 449 GELKNLVFGQNDAVDAIAKAILRSR-------AGLANAGKPTGSFLLAGPTGVGKTELAK 501

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGR 97
           +LA + G  F++ +++++ E   V R
Sbjct: 502 QLAAVLGVHFLRFDMSEYMEKHAVAR 527


>gi|119500238|ref|XP_001266876.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
 gi|119415041|gb|EAW24979.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
          Length = 821

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   +++
Sbjct: 385 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 434


>gi|169606596|ref|XP_001796718.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15]
 gi|111065055|gb|EAT86175.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15]
          Length = 763

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 21/145 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  AG PF  +  ++F E+ YVG   + V ++ +    
Sbjct: 323 LPKGVLLIGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRVRELFQQART 381

Query: 109 VAINIV----------RESRRDEVREQASINAEERILDALVGKT-----ATSNTREVFRK 153
            A  IV          +   RD    + ++N     LD     T     A +N  E+  +
Sbjct: 382 KAPAIVFIDELDAIGGKRKSRDANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQ 441

Query: 154 KL-RDGEISDKEIDIEVADTSSDIS 177
            L R G   D+ + +E+ D    ++
Sbjct: 442 ALTRPGRF-DRHVQVELPDVGGRLA 465


>gi|109947137|ref|YP_664365.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
 gi|109714358|emb|CAJ99366.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
          Length = 550

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|318042155|ref|ZP_07974111.1| cell division protein FtsH3 [Synechococcus sp. CB0101]
          Length = 626

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258


>gi|313673405|ref|YP_004051516.1| membrane protease ftsh catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940161|gb|ADR19353.1| membrane protease FtsH catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 603

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 240


>gi|326773865|ref|ZP_08233147.1| cell division protein [Actinomyces viscosus C505]
 gi|326636004|gb|EGE36908.1| cell division protein [Actinomyces viscosus C505]
          Length = 691

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293


>gi|170076675|ref|YP_001733313.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884344|gb|ACA98057.1| ATP-dependent metalloprotease FtsH subfamily [Synechococcus sp. PCC
           7002]
          Length = 620

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|153952819|ref|YP_001393584.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219853484|ref|YP_002470606.1| hypothetical protein CKR_0141 [Clostridium kluyveri NBRC 12016]
 gi|146345700|gb|EDK32236.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219567208|dbj|BAH05192.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 600

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 247


>gi|270157541|ref|ZP_06186198.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
 gi|269989566|gb|EEZ95820.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDL 242


>gi|215400737|ref|YP_002327499.1| putative cell division protein FtsH [Vaucheria litorea]
 gi|310946771|sp|B7T1V0|FTSH_VAULI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|194441187|gb|ACF70915.1| putative cell division protein FtsH [Vaucheria litorea]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++L+GP G GKT +++ +A  AG PFI +  ++F E+ +VG    + +RDL   A
Sbjct: 207 IPKGVILIGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFKTA 263


>gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
 gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
          Length = 584

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    + +RDL   A
Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222


>gi|118619366|ref|YP_907698.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99]
 gi|118571476|gb|ABL06227.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99]
          Length = 740

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|33860785|ref|NP_892346.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633727|emb|CAE18685.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 618

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 251


>gi|311029001|ref|ZP_07707091.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252


>gi|312084249|ref|XP_003144198.1| hypothetical protein LOAG_08620 [Loa loa]
 gi|307760641|gb|EFO19875.1| hypothetical protein LOAG_08620 [Loa loa]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 22  GQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
           G  +AK   R +   LR+  R  QL A L     PK +LLVGP G GKT +++ +A  A 
Sbjct: 234 GTDEAKNELRGIVSYLRDPERYTQLGARL-----PKGVLLVGPPGTGKTLLAKAIAGEAQ 288

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            PF +   ++F E+ +VG+   + +RDL    I  V
Sbjct: 289 VPFFQASGSEFDEL-FVGQGARR-VRDLFGKIIRKV 322


>gi|303289655|ref|XP_003064115.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454431|gb|EEH51737.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 151 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFKAA 207


>gi|123967784|ref|YP_001008642.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
 gi|123197894|gb|ABM69535.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
          Length = 617

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|317969090|ref|ZP_07970480.1| cell division protein FtsH3 [Synechococcus sp. CB0205]
          Length = 634

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 210 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 266


>gi|317013731|gb|ADU81167.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 550

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 631

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A++     L +  +  ++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKEALSEIVDFLHDPGKYTEIGAK-----MPKGALLVGPPGTGKTLLAQAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 AGVPFFSISGSEFVEM-FVGMGASR-VRDLFKQA 253


>gi|308066893|ref|YP_003868498.1| cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305856172|gb|ADM67960.1| Cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 678

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255


>gi|123965493|ref|YP_001010574.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
 gi|123199859|gb|ABM71467.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 252


>gi|119484306|ref|ZP_01618923.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119457780|gb|EAW38903.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 612

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|113477219|ref|YP_723280.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110168267|gb|ABG52807.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|291569833|dbj|BAI92105.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 612

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|254526296|ref|ZP_05138348.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537720|gb|EEE40173.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 617

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|209525311|ref|ZP_03273853.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209494326|gb|EDZ94639.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 612

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|183985081|ref|YP_001853372.1| membrane-bound protease FtsH [Mycobacterium marinum M]
 gi|183178407|gb|ACC43517.1| membrane-bound protease FtsH [Mycobacterium marinum M]
          Length = 746

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|331268352|ref|YP_004394844.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329124902|gb|AEB74847.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 662

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 606

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + +++ A      MPK ILLVGP G GKT +++ +A  A  PF  +  ++F E+ 
Sbjct: 187 LHNPGKYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM- 240

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 241 FVGMGASK-VRDLFQQA 256


>gi|254432006|ref|ZP_05045709.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
 gi|197626459|gb|EDY39018.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 207 IPKGVLLIGPPGTGKTLLARAIAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 259


>gi|254421464|ref|ZP_05035182.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188953|gb|EDX83917.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F E+  VG+   + +RDL   A
Sbjct: 318 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 374


>gi|310829343|ref|YP_003961700.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
 gi|308741077|gb|ADO38737.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFYIISGSDFVEM-FVGVGASR-VRDLFETA 252


>gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus]
          Length = 628

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +++VGP G GKT +++ +A  AG PFI +  ++F E+ +VG    + +RDL + A
Sbjct: 207 PKGVIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFETA 262


>gi|188584723|ref|YP_001916268.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|310946749|sp|B2A3Q4|FTSH_NATTJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|179349410|gb|ACB83680.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 693

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT + R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 186 IPKGVLLVGPPGTGKTLLGRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 242


>gi|153003705|ref|YP_001378030.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027278|gb|ABS25046.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. Fw109-5]
          Length = 763

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL + I GQ  A  A+  A++    R  L +  R    P  N L  GPTGVGKT 
Sbjct: 450 RNLEPELKKVIFGQNAAVEAIVSAIK--LSRSGLGSPER----PIGNFLFSGPTGVGKTE 503

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LAR+ G  F++ ++T++ E   V R
Sbjct: 504 LAKQLARILGVEFLRFDMTEYQEKHTVSR 532


>gi|72382193|ref|YP_291548.1| peptidase M41, FtsH [Prochlorococcus marinus str. NATL2A]
 gi|72002043|gb|AAZ57845.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 575

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + D  + + I L+N       P  L+D     PK +LLVGP G GKT ++R +A  A  P
Sbjct: 132 ESDELKEIVIFLKN-------PQTLKDLGAKTPKGVLLVGPPGTGKTLLARSIAGEADVP 184

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F  +  ++F E+ +VG    + +RDL   A
Sbjct: 185 FFSISASEFVEM-FVGVGAGR-VRDLFKSA 212


>gi|261856348|ref|YP_003263631.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Halothiobacillus neapolitanus c2]
 gi|261836817|gb|ACX96584.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Halothiobacillus neapolitanus c2]
          Length = 758

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S RE++  LDR     + GQ+DA   +  ++R         + LR    P  + L  GPT
Sbjct: 443 SDREVLRHLDRNLNMVVFGQEDAIEQITTSIR------MARSGLRTADKPIGSYLFAGPT 496

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT +S++LARL G   ++ +++++ E   V R
Sbjct: 497 GVGKTEVSKQLARLLGIKLVRFDMSEYMERHSVSR 531


>gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 608

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 246


>gi|157412585|ref|YP_001483451.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
 gi|157387160|gb|ABV49865.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
          Length = 617

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|113476986|ref|YP_723047.1| FtsH-2 peptidase [Trichodesmium erythraeum IMS101]
 gi|110168034|gb|ABG52574.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Trichodesmium erythraeum IMS101]
          Length = 621

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 193 IPKGLLLVGPPGTGKTLLSKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFKQA 249


>gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
 gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
          Length = 602

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 192 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 248


>gi|296447237|ref|ZP_06889167.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296255296|gb|EFH02393.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 197 IPKGILLVGPPGTGKTLLARAVAGEAGVPFYSITGSEFVEM-FVGVGAAR-VRDL 249


>gi|291279420|ref|YP_003496255.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
 gi|290754122|dbj|BAI80499.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFD 240


>gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 684

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 196 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 252


>gi|124025741|ref|YP_001014857.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
 gi|123960809|gb|ABM75592.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
          Length = 575

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + D  + + I L+N       P  L+D     PK +LLVGP G GKT ++R +A  A  P
Sbjct: 132 ESDELKEIVIFLKN-------PQTLKDLGAKTPKGVLLVGPPGTGKTLLARSIAGEADVP 184

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F  +  ++F E+ +VG    + +RDL   A
Sbjct: 185 FFSISASEFVEM-FVGVGAGR-VRDLFKSA 212


>gi|16329602|ref|NP_440330.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492513|sp|P72991|FTSH3_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|1652085|dbj|BAA17010.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|332800065|ref|YP_004461564.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
 gi|332697800|gb|AEE92257.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
          Length = 599

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 245


>gi|315446252|ref|YP_004079131.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1]
 gi|315264555|gb|ADU01297.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1]
          Length = 789

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
 gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
          Length = 609

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK +LL+GP G GKT ++R +A  AG PF  +  ++F E+ +VG
Sbjct: 190 MPKGVLLIGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVG 233


>gi|168044124|ref|XP_001774532.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674087|gb|EDQ60600.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 630

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  V  ++F E+ +VG    + +RDL
Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFAVSGSEFVEM-FVGVGASR-VRDL 252


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F E+  VG+   + +RDL   A
Sbjct: 161 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 217


>gi|330839242|ref|YP_004413822.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
 gi|329747006|gb|AEC00363.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
          Length = 663

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 189 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 245


>gi|322379440|ref|ZP_08053810.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1]
 gi|322380949|ref|ZP_08055015.1| cell division protein FtsH [Helicobacter suis HS5]
 gi|321146621|gb|EFX41455.1| cell division protein FtsH [Helicobacter suis HS5]
 gi|321148149|gb|EFX42679.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1]
          Length = 553

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L   L     PK +LLVGP GVGKT I++ LA  A  PF     + F +I 
Sbjct: 174 LKNPKKYQELKIKL-----PKGVLLVGPPGVGKTMIAKALASEAKVPFFYHSGSAFVQI- 227

Query: 94  YVGRNVEQI 102
           YVG   +++
Sbjct: 228 YVGVGAKRV 236


>gi|157364388|ref|YP_001471155.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
 gi|310946767|sp|A8F7F7|FTSH_THELT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157314992|gb|ABV34091.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
          Length = 626

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNQA 250


>gi|148243292|ref|YP_001228449.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147851602|emb|CAK29096.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 618

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 251


>gi|118443161|ref|YP_877130.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
 gi|310943127|sp|A0PXM8|FTSH_CLONN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118133617|gb|ABK60661.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
          Length = 676

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
 gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
          Length = 743

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
 gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
          Length = 665

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  AG  F+ +  + F E+ YVG    + +RDL D A
Sbjct: 202 IPKGILLVGPPGTGKTLLAKAVAGEAGVHFLSISGSDFVEL-YVGVGASR-VRDLFDQA 258


>gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 611

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 249


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F EI  VG+   + +RDL   A
Sbjct: 313 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFEEI-LVGQGARR-MRDLFKAA 369


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F E+  VG+   + +RDL   A
Sbjct: 347 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 403


>gi|37521486|ref|NP_924863.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35212483|dbj|BAC89858.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|327482314|gb|AEA85624.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 245


>gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
 gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
          Length = 801

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 243

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 244 FVGVGASR-VRDLFEQA 259


>gi|303275720|ref|XP_003057154.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461506|gb|EEH58799.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 294 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 350


>gi|148238691|ref|YP_001224078.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847230|emb|CAK22781.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 617

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|307297687|ref|ZP_07577493.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916947|gb|EFN47329.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 633

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 194 MPKGLLLVGPPGTGKTLLARAVAGEAGVPFFFISGSDFVEL-FVGVGAAR-VRDLFTQA 250


>gi|294678708|ref|YP_003579323.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
 gi|294477528|gb|ADE86916.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
          Length = 631

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|75116392|sp|Q67WJ2|FTSH6_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=OsFTSH6; Flags: Precursor
 gi|51535393|dbj|BAD37263.1| putative chloroplast protease [Oryza sativa Japonica Group]
 gi|51535559|dbj|BAD37477.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 686

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 254 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFDRA 309


>gi|145222008|ref|YP_001132686.1| ATP-dependent metalloprotease FtsH [Mycobacterium gilvum PYR-GCK]
 gi|145214494|gb|ABP43898.1| membrane protease FtsH catalytic subunit [Mycobacterium gilvum
           PYR-GCK]
          Length = 794

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
 gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
          Length = 777

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|6692685|gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana]
          Length = 662

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308


>gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 795

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 170 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 223

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 224 FVGVGASR-VRDLFEQA 239


>gi|298709650|emb|CBJ31458.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 951

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           PK ILLVGP G GKT I++  A  AG PF+    ++F  + YVG  V  + R
Sbjct: 459 PKGILLVGPPGTGKTLIAKACAGEAGVPFLYACGSEFNGV-YVGMGVAAVKR 509


>gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 692

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 265 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGMGAAK-VRDLFEQA 321


>gi|300867979|ref|ZP_07112618.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300334000|emb|CBN57796.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 612

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245


>gi|218245163|ref|YP_002370534.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058189|ref|YP_003136077.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165641|gb|ACK64378.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588355|gb|ACU99241.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|56751224|ref|YP_171925.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299108|ref|YP_399316.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56686183|dbj|BAD79405.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81167989|gb|ABB56329.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 613

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246


>gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi
           103S]
 gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi
           103S]
          Length = 777

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|237746179|ref|ZP_04576659.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
 gi|229377530|gb|EEO27621.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
          Length = 655

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 195 IPHGILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDLFEQA 251


>gi|325067914|ref|ZP_08126587.1| ATP-dependent metalloprotease FtsH [Actinomyces oris K20]
          Length = 358

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    + +RDL + A
Sbjct: 221 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYAISGSDFVEM-YVGVGASR-VRDLFEKA 277


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F E+  VG+   + +RDL   A
Sbjct: 381 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 437


>gi|302833547|ref|XP_002948337.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f.
           nagariensis]
 gi|300266557|gb|EFJ50744.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 287 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEV-FVGVGASR-VRDLFEKA 343


>gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 825

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI +VG   ++ +R+L   A
Sbjct: 375 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFTAA 431


>gi|297724619|ref|NP_001174673.1| Os06g0229066 [Oryza sativa Japonica Group]
 gi|255676855|dbj|BAH93401.1| Os06g0229066 [Oryza sativa Japonica Group]
          Length = 486

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 249 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFDRA 304


>gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF      +F E+  VG+   + +RDL   A
Sbjct: 188 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 244


>gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa]
 gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 265 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 321


>gi|88807968|ref|ZP_01123479.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
 gi|88788007|gb|EAR19163.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|242279265|ref|YP_002991394.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
 gi|242122159|gb|ACS79855.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
          Length = 689

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240


>gi|208434232|ref|YP_002265898.1| cell division protein [Helicobacter pylori G27]
 gi|208432161|gb|ACI27032.1| cell division protein [Helicobacter pylori G27]
          Length = 527

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 170 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 220


>gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 701

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 271 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 327


>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 1157

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 243 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 299


>gi|182625999|ref|ZP_02953762.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177908706|gb|EDT71217.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|120406320|ref|YP_956149.1| ATP-dependent metalloprotease FtsH [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959138|gb|ABM16143.1| membrane protease FtsH catalytic subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 781

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|269101027|ref|YP_003289175.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|310943129|sp|D1J722|FTSH_ECTSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|266631535|emb|CAV31206.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|270118665|emb|CAT18723.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
          Length = 661

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +++VGP G GKT +++ +A  AG PFI +  ++F E+ +VG    + +RDL + A
Sbjct: 228 PKGVIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFETA 283


>gi|301123763|ref|XP_002909608.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262100370|gb|EEY58422.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 658

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF     ++F E+ YVG    + +RDL + A
Sbjct: 253 LPKGVLLTGPPGTGKTLLARAIAGEAGVPFFYSSGSEFEEM-YVGVGARR-VRDLFESA 309


>gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
 gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
          Length = 672

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 201 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDL 253


>gi|146283987|ref|YP_001174140.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
 gi|145572192|gb|ABP81298.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 177 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 233


>gi|110800961|ref|YP_697158.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|110675608|gb|ABG84595.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 688

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI +VG   ++ +R+L   A
Sbjct: 237 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFAAA 293


>gi|209524767|ref|ZP_03273314.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328]
 gi|209494911|gb|EDZ95219.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328]
          Length = 928

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ+A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 603 QLESHLHRRVIGQQEAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 656

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA     +    I+++++++ E   V R V
Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689


>gi|78211853|ref|YP_380632.1| FtsH peptidase [Synechococcus sp. CC9605]
 gi|78196312|gb|ABB34077.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19]
 gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 191 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 247


>gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
 gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
          Length = 584

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    + +RDL   A
Sbjct: 166 FPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222


>gi|89901195|ref|YP_523666.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118]
 gi|89345932|gb|ABD70135.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rhodoferax
           ferrireducens T118]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|86607354|ref|YP_476117.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
 gi|86555896|gb|ABD00854.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 257


>gi|18311452|ref|NP_563386.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168206865|ref|ZP_02632870.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211208|ref|ZP_02636833.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215142|ref|ZP_02640767.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|168218230|ref|ZP_02643855.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|18146136|dbj|BAB82176.1| probable cell-division protein [Clostridium perfringens str. 13]
 gi|170661765|gb|EDT14448.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710762|gb|EDT22944.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713449|gb|EDT25631.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|182379753|gb|EDT77232.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|87125051|ref|ZP_01080898.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167371|gb|EAQ68631.1| cell division protein [Synechococcus sp. RS9917]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 603

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 197 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253


>gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 609

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK +   +   L N  +  ++ A      MPK +LLVGP G GKT +++ +A  
Sbjct: 167 VAGEDEAKESLTEIVDYLHNPQKYTEVGAS-----MPKGLLLVGPPGTGKTMLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 253


>gi|254432227|ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
 gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
          Length = 614

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247


>gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|169343167|ref|ZP_02864188.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169298719|gb|EDS80795.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 257


>gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 464

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF ++  ++F E+ YVG    + +R+L   A
Sbjct: 72  LPKGVLLYGPPGTGKTHLARAIAGEAGVPFFQMSGSEFDEL-YVGVGARR-VRELFAAA 128


>gi|33864841|ref|NP_896400.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
 gi|33632364|emb|CAE06820.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
          Length = 615

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 600

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 175 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 227


>gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 603

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 197 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253


>gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 586

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 168 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 224


>gi|225026759|ref|ZP_03715951.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
 gi|224955878|gb|EEG37087.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
          Length = 604

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|110803261|ref|YP_699726.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683762|gb|ABG87132.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 601

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|42561751|ref|NP_563766.3| FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion
           binding [Arabidopsis thaliana]
 gi|75331430|sp|Q8W585|FTSH8_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 8,
           chloroplastic; Short=AtFTSH8; Flags: Precursor
 gi|16930423|gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|28392858|gb|AAO41866.1| putative FtsH protease [Arabidopsis thaliana]
 gi|332189865|gb|AEE27986.1| cell division protease ftsH-8 [Arabidopsis thaliana]
          Length = 685

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308


>gi|322824610|gb|EFZ29959.1| katanin-like protein, putative [Trypanosoma cruzi]
          Length = 926

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AKR+V  A+    RR  L   LRD   P+ +LL GP G GKT I+R +A  A  
Sbjct: 608 IAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRAQC 665

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            F+ +  +      ++G + E+++R L  VA+
Sbjct: 666 TFLNISASSLMS-KWMG-DGEKLVRCLFAVAV 695


>gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 676

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  ++F E+  VG    + +RDL D A
Sbjct: 234 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEV-LVGVGASR-VRDLFDQA 290


>gi|291335263|gb|ADD94882.1| FtsH peptidase [uncultured marine bacterium MedDCM-OCT-S09-C166]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|260436648|ref|ZP_05790618.1| cell division protease FtsH [Synechococcus sp. WH 8109]
 gi|260414522|gb|EEX07818.1| cell division protease FtsH [Synechococcus sp. WH 8109]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249


>gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa]
 gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319


>gi|116072106|ref|ZP_01469374.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116065729|gb|EAU71487.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|21954076|gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana]
          Length = 501

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 68  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 120


>gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205]
          Length = 626

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 248


>gi|315586280|gb|ADU40661.1| cell division protein (FtsH) [Helicobacter pylori 35A]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
 gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
          Length = 584

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    + +RDL   A
Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222


>gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           230613]
          Length = 601

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|317012128|gb|ADU82736.1| cell division protein (ftsH) [Helicobacter pylori Lithuania75]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308


>gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 601

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|158335586|ref|YP_001516758.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305827|gb|ABW27444.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 611

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 244


>gi|78185610|ref|YP_378044.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169904|gb|ABB27001.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|303233293|ref|ZP_07319964.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
 gi|302480593|gb|EFL43682.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PK  LLVGP G GKT ++R +A  A  PF ++  ++F E+ +VGR   + +RDL   A
Sbjct: 213 CPKGALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEFVEM-FVGRGAAK-VRDLFKQA 269


>gi|312113136|ref|YP_004010732.1| ATP-dependent Clp protease ATP-binding subunit clpA [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218265|gb|ADP69633.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 786

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L R + GQ  A  A++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 459 RNLEGDLRRVVFGQDQAIHALSAAIKLAR------AGLRDAEKPIGSYLFSGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LA L G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 VARQLASLLGVQILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 563


>gi|317153521|ref|YP_004121569.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943772|gb|ADU62823.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 776

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRL 73
           +L   + GQ +A RA+A +++ R R     A +R    P    LL GPTGVGKT ++R+L
Sbjct: 461 DLKSVVFGQDEAVRALARSIK-RSR-----AGMRQSGRPVGCFLLTGPTGVGKTELARQL 514

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A++ G  F++ +++++ E   V R
Sbjct: 515 AKVLGISFLRYDMSEYMEKHAVAR 538


>gi|210623232|ref|ZP_03293671.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
 gi|210153769|gb|EEA84775.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
          Length = 668

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  QL A +     PK IL+VGP G GKT +S+ +A  AG PF  +  + F E+ 
Sbjct: 178 LKNPKKYTQLGARI-----PKGILMVGPPGTGKTFLSKAVAGEAGVPFFSISGSDFVEM- 231

Query: 94  YVG 96
           +VG
Sbjct: 232 FVG 234


>gi|254421263|ref|ZP_05034981.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188752|gb|EDX83716.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 668

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 244 IPKGVLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEM-FVGVGASR-VRDL 296


>gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
 gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
          Length = 601

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|317180091|dbj|BAJ57877.1| cell division protein [Helicobacter pylori F32]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|308063148|gb|ADO05035.1| cell division protein (ftsH) [Helicobacter pylori Sat464]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|237748251|ref|ZP_04578731.1| ftsH protein [Oxalobacter formigenes OXCC13]
 gi|229379613|gb|EEO29704.1| ftsH protein [Oxalobacter formigenes OXCC13]
          Length = 650

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  ILLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 IPHGILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDLFEQA 252


>gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa]
 gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 42  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 94


>gi|217033423|ref|ZP_03438853.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10]
 gi|216944128|gb|EEC23556.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|210134484|ref|YP_002300923.1| cell division protein FtsH [Helicobacter pylori P12]
 gi|210132452|gb|ACJ07443.1| cell division protein FtsH [Helicobacter pylori P12]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|188527092|ref|YP_001909779.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|188143332|gb|ACD47749.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|78223097|ref|YP_384844.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194352|gb|ABB32119.1| membrane protease FtsH catalytic subunit [Geobacter metallireducens
           GS-15]
          Length = 608

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|71414691|ref|XP_809439.1| katanin-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70873820|gb|EAN87588.1| katanin-like protein, putative [Trypanosoma cruzi]
          Length = 923

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AKR+V  A+    RR  L   LRD   P+ +LL GP G GKT I+R +A  A  
Sbjct: 608 IAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRAQC 665

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            F+ +  +      ++G + E+++R L  VA+
Sbjct: 666 TFLNISASSLMS-KWMG-DGEKLVRCLFAVAV 695


>gi|226942974|ref|YP_002798047.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii
           DJ]
 gi|226717901|gb|ACO77072.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii
           DJ]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
 gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 191 LQNPGKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 245 FVGVGASR-VRDLFEQA 260


>gi|323486012|ref|ZP_08091343.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
 gi|323400579|gb|EGA92946.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
          Length = 625

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ +AK A   +   L N  +  ++ A     ++PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258


>gi|317968672|ref|ZP_07970062.1| cell division protein FtsH [Synechococcus sp. CB0205]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247


>gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 600

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|217076556|ref|YP_002334272.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
 gi|217036409|gb|ACJ74931.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
          Length = 618

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 MPKGVLLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNKA 248


>gi|168016254|ref|XP_001760664.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688024|gb|EDQ74403.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 634

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R ++  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 212 IPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 268


>gi|168034706|ref|XP_001769853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678962|gb|EDQ65415.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 257


>gi|150020111|ref|YP_001305465.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis
           BI429]
 gi|149792632|gb|ABR30080.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis
           BI429]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 MPKGVLLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNQA 248


>gi|161525463|ref|YP_001580475.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189349804|ref|YP_001945432.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|160342892|gb|ABX15978.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189333826|dbj|BAG42896.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 615

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|323692944|ref|ZP_08107165.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
 gi|323502945|gb|EGB18786.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
          Length = 625

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ +AK A   +   L N  +  ++ A     ++PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258


>gi|261837732|gb|ACX97498.1| metalloprotease [Helicobacter pylori 51]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|83646751|ref|YP_435186.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
 gi|123739894|sp|Q2SF13|FTSH_HAHCH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|83634794|gb|ABC30761.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 20/99 (20%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDE--------LMPKNILLVGPTGVGKTAISR 71
           + GQ +AKR V          Q+L   LRD         L P+ +LL+GP G GKT ++R
Sbjct: 178 VAGQTNAKREV----------QELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLAR 227

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            LA  AG  F  +  ++F E+ +VG    + +R L  +A
Sbjct: 228 ALAGEAGVNFYPMSASEFIEV-FVGVGASR-VRQLFKIA 264


>gi|332673127|gb|AEE69944.1| cell division protein (ftsH) [Helicobacter pylori 83]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 624

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 244


>gi|291287208|ref|YP_003504024.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884368|gb|ADD68068.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 630

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262


>gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
          Length = 693

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319


>gi|37522710|ref|NP_926087.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213712|dbj|BAC91082.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 626

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 256


>gi|322701840|gb|EFY93588.1| intermembrane space AAA protease IAP-1 [Metarhizium acridum CQMa
           102]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F EI +VG   ++ +R+L   A
Sbjct: 289 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFAAA 345


>gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera]
          Length = 694

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 264 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 320


>gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum]
          Length = 693

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319


>gi|108562713|ref|YP_627029.1| cell division protein [Helicobacter pylori HPAG1]
 gi|107836486|gb|ABF84355.1| cell division protein [Helicobacter pylori HPAG1]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|309780957|ref|ZP_07675696.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|330824647|ref|YP_004387950.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|57282289|emb|CAD32530.1| putative zinc metallopeptidase [uncultured bacterium]
 gi|308920260|gb|EFP65918.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|329310019|gb|AEB84434.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 627

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLTKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|15644914|ref|NP_207084.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|2313382|gb|AAD07354.1| cell division protein (ftsH) [Helicobacter pylori 26695]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|75114857|sp|Q655S1|FTSH2_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=OsFTSH2; Flags: Precursor
 gi|52075838|dbj|BAD45446.1| putative FtsH-like protein Pftf precursor [Oryza sativa Japonica
           Group]
 gi|125556417|gb|EAZ02023.1| hypothetical protein OsI_24055 [Oryza sativa Indica Group]
 gi|125598182|gb|EAZ37962.1| hypothetical protein OsJ_22309 [Oryza sativa Japonica Group]
          Length = 676

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302


>gi|87309826|ref|ZP_01091960.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
 gi|87287590|gb|EAQ79490.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
          Length = 651

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF  V  ++F ++ +VG    + +RDL   A
Sbjct: 207 VPKGVLLIGPPGTGKTLLARAIAGEAGVPFYSVSGSEFIQM-FVGVGASR-VRDLFKTA 263


>gi|317181629|dbj|BAJ59413.1| cell division protein [Helicobacter pylori F57]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|317177101|dbj|BAJ54890.1| cell division protein [Helicobacter pylori F16]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|317008936|gb|ADU79516.1| cell division protein [Helicobacter pylori India7]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|311032289|ref|ZP_07710379.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 327

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 36  IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 92


>gi|195623450|gb|ACG33555.1| FtsH6 - Zea mays FtsH protease
          Length = 677

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302


>gi|297379508|gb|ADI34395.1| cell division protein (ftsH) [Helicobacter pylori v225d]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|282899237|ref|ZP_06307210.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281195873|gb|EFA70797.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262


>gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 694

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 264 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 320


>gi|87301887|ref|ZP_01084721.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87283455|gb|EAQ75410.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247


>gi|325000127|ref|ZP_08121239.1| membrane protease FtsH catalytic subunit [Pseudonocardia sp. P1]
          Length = 846

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 187 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 240

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 241 FVGVGASR-VRDLFEQA 256


>gi|317179319|dbj|BAJ57107.1| cell division protein [Helicobacter pylori F30]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 610

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 610

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL D A
Sbjct: 188 VPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFDQA 244


>gi|254822681|ref|ZP_05227682.1| ATP-dependent metallopeptidase HflB [Mycobacterium intracellulare
           ATCC 13950]
          Length = 811

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 183 LQNPGRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 237 FVGVGASR-VRDLFEQA 252


>gi|108804640|ref|YP_644577.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
 gi|123069043|sp|Q1AV13|FTSH_RUBXD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|108765883|gb|ABG04765.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
          Length = 651

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q+L A +     PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 208 LENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 261

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 262 FVGVGASR-VRDLFEQA 277


>gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 227 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 283


>gi|308184089|ref|YP_003928222.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
 gi|308060009|gb|ADO01905.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LLVGP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FIPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|218197842|gb|EEC80269.1| hypothetical protein OsI_22249 [Oryza sativa Indica Group]
          Length = 681

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D
Sbjct: 249 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFD 302


>gi|187830110|ref|NP_001120721.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093209|gb|ABY82590.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093213|gb|ABY82592.1| filamentation temperature-sensitive H 2B [Zea mays]
          Length = 677

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302


>gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
 gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
          Length = 663

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250


>gi|282896488|ref|ZP_06304508.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281198594|gb|EFA73475.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262


>gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5]
 gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 192 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 245

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 246 FVGVGASR-VRDLFEQA 261


>gi|254778989|ref|YP_003057094.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
 gi|254000900|emb|CAX28836.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|225375862|ref|ZP_03753083.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
 gi|225212297|gb|EEG94651.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
          Length = 598

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 183 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 239


>gi|298491599|ref|YP_003721776.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298233517|gb|ADI64653.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262


>gi|189425579|ref|YP_001952756.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
 gi|189421838|gb|ACD96236.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 242


>gi|115469444|ref|NP_001058321.1| Os06g0669400 [Oryza sativa Japonica Group]
 gi|113596361|dbj|BAF20235.1| Os06g0669400 [Oryza sativa Japonica Group]
          Length = 609

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 235


>gi|108805004|ref|YP_644941.1| FtsH-2 peptidase [Rubrobacter xylanophilus DSM 9941]
 gi|108766247|gb|ABG05129.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rubrobacter
           xylanophilus DSM 9941]
          Length = 627

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q+L A +     PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 184 LENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 237

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 238 FVGVGASR-VRDLFEQA 253


>gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea]
 gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea]
          Length = 628

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|318042673|ref|ZP_07974629.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247


>gi|308061639|gb|ADO03527.1| cell division protein (ftsH) [Helicobacter pylori Cuz20]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|332654057|ref|ZP_08419801.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
 gi|332517143|gb|EGJ46748.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
          Length = 724

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 201 RDVAGQDEAKESLQEIIDILHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 255

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
             AG PF  +  + F E+ +VG    + +RDL
Sbjct: 256 GEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 285


>gi|261839142|gb|ACX98907.1| cell division protein [Helicobacter pylori 52]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|238923099|ref|YP_002936612.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874771|gb|ACR74478.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 707

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  R   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 260 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 287


>gi|237836501|ref|XP_002367548.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
 gi|211965212|gb|EEB00408.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
          Length = 1188

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F EI +VG    + +R+L D A 
Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731

Query: 112 NIV 114
            + 
Sbjct: 732 KVA 734


>gi|187830070|ref|NP_001120720.1| LOC100147734 [Zea mays]
 gi|166093207|gb|ABY82589.1| filamentation temperature-sensitive H 2A [Zea mays]
 gi|166093211|gb|ABY82591.1| filamentation temperature-sensitive H 2A [Zea mays]
          Length = 677

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302


>gi|158319483|ref|YP_001511990.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158139682|gb|ABW17994.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 651

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  +   L A +     PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 183 LRNPKKYMDLGARI-----PKGILMVGPPGTGKTYLTKAVAGEAGVPFFSISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 237 FVGVGASR-VRDLFEQA 252


>gi|75908451|ref|YP_322747.1| FtsH-2 peptidase [Anabaena variabilis ATCC 29413]
 gi|75702176|gb|ABA21852.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262


>gi|52075839|dbj|BAD45447.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 472

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 42  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 94


>gi|67926179|ref|ZP_00519407.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
 gi|67851976|gb|EAM47507.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
          Length = 354

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|298736767|ref|YP_003729297.1| putative cell division protein [Helicobacter pylori B8]
 gi|298355961|emb|CBI66833.1| putative cell division protein [Helicobacter pylori B8]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243


>gi|291523951|emb|CBK89538.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale DSM 17629]
          Length = 703

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  R   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 260 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 287


>gi|284929257|ref|YP_003421779.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809701|gb|ADB95398.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 626

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|240144375|ref|ZP_04742976.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
 gi|257203626|gb|EEV01911.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
          Length = 608

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 254


>gi|168040828|ref|XP_001772895.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675806|gb|EDQ62297.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 696

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 266 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 322


>gi|149200008|ref|ZP_01877034.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
 gi|149136881|gb|EDM25308.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
          Length = 693

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  L+VGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 217 LPKGCLMVGPPGTGKTLLARAIAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFEQA 273


>gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 241


>gi|303327632|ref|ZP_07358073.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
 gi|302862572|gb|EFL85505.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
          Length = 681

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 229


>gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 798

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 243

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 244 FVGVGASR-VRDLFEQA 259


>gi|255084099|ref|XP_002508624.1| predicted protein [Micromonas sp. RCC299]
 gi|226523901|gb|ACO69882.1| predicted protein [Micromonas sp. RCC299]
          Length = 717

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK +LLVGP G GKT ++R +A  AG PF     ++F E  +G   R V  + R     
Sbjct: 247 LPKGLLLVGPPGTGKTMLARAVAGEAGVPFFYTSGSEFEEMFVGVGARRVRDLFRAAKAA 306

Query: 110 AINIV 114
           A  IV
Sbjct: 307 APCIV 311


>gi|221505298|gb|EEE30952.1| paraplegin, putative [Toxoplasma gondii VEG]
          Length = 1188

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F EI +VG    + +R+L D A 
Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731

Query: 112 NIV 114
            + 
Sbjct: 732 KVA 734


>gi|221484027|gb|EEE22331.1| peptidase M14 family protein [Toxoplasma gondii GT1]
          Length = 1188

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F EI +VG    + +R+L D A 
Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731

Query: 112 NIV 114
            + 
Sbjct: 732 KVA 734


>gi|241747692|ref|XP_002414347.1| 26S proteasome regulatory subunit, putative [Ixodes scapularis]
 gi|215508201|gb|EEC17655.1| 26S proteasome regulatory subunit, putative [Ixodes scapularis]
          Length = 365

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  AR AGA FI +EV   T+  Y
Sbjct: 133 PKGVLLHGPPGCGKTMIAKATAREAGARFINLEVAALTDKWY 174


>gi|254416578|ref|ZP_05030329.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176544|gb|EDX71557.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 629

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 195 IPKGVLLVGPPGTGKTMLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 251


>gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 640

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 219 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 275


>gi|168001910|ref|XP_001753657.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695064|gb|EDQ81409.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 647

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R ++  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 225 IPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 281


>gi|241662241|ref|YP_002980601.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|240864268|gb|ACS61929.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 605

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|255071009|ref|XP_002507586.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
 gi|226522861|gb|ACO68844.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 245


>gi|206890631|ref|YP_002249322.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742569|gb|ACI21626.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + SEL   I GQ +A +AV   ++         A L++   P    L  GPTGVGKT 
Sbjct: 437 KNLESELKSVIFGQDEAVKAVVRVIK------LAKAGLKEPQRPIGCFLFTGPTGVGKTE 490

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA++ G  FI+ +++++ E   V +
Sbjct: 491 LARQLAKILGIGFIRFDMSEYMEKHSVAK 519


>gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 628

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 628

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense]
          Length = 702

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 272 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGIGASR-VRDLFKKA 328


>gi|84468286|dbj|BAE71226.1| putative zinc dependent protease [Trifolium pratense]
          Length = 692

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 262 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 318


>gi|17232428|ref|NP_488976.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17134074|dbj|BAB76635.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 645

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262


>gi|296084117|emb|CBI24505.3| unnamed protein product [Vitis vinifera]
          Length = 104

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 16/89 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  ++   S +      IA G
Sbjct: 14  GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVSASIVESGD-----LIAYG 68

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
                    L+PE  GRFP+ V L +LN+
Sbjct: 69  ---------LIPEFIGRFPISVSLSALNE 88


>gi|168001607|ref|XP_001753506.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695385|gb|EDQ81729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 688

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 258 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 310


>gi|327481003|gb|AEA84313.1| ATP-dependent metalloprotease FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 626

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
 gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
          Length = 799

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 243

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 244 FVGVGASR-VRDLFEQA 259


>gi|292656040|ref|YP_003535937.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291370819|gb|ADE03046.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 474

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
            IL VGP G GKT +SR LA   G PF++V+++  T   +G   +NVE+
Sbjct: 220 KILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 268


>gi|254520537|ref|ZP_05132593.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914286|gb|EEH99487.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 600

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|91775521|ref|YP_545277.1| FtsH-2 peptidase [Methylobacillus flagellatus KT]
 gi|91709508|gb|ABE49436.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
          Length = 605

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   R +   LR+  + QQ+   +     PK +LLVGP G GKT ++R +A  
Sbjct: 177 VAGMENAKLELREIVDYLRDPKKFQQIGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F+ +  ++F E+ +VG    + +RDL   A
Sbjct: 232 AGVTFLSITASQFIEM-FVGVGAGR-VRDLFATA 263


>gi|315453661|ref|YP_004073931.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC
           49179]
 gi|3122116|sp|O32617|FTSH_HELFC RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2660540|emb|CAA05102.1| cell cycle protein [Helicobacter felis]
 gi|315132713|emb|CBY83341.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC
           49179]
          Length = 638

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL D+A
Sbjct: 208 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEM-FVGLGASR-VRDLFDIA 264


>gi|331699843|ref|YP_004336082.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954532|gb|AEA28229.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
          Length = 818

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|260437757|ref|ZP_05791573.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
 gi|292809779|gb|EFF68984.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
          Length = 618

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  +L A +     PK ++LVGP G GKT I++ +A  AG PF  +  + F E+ 
Sbjct: 193 LKNPGKYVELGARI-----PKGVILVGPPGTGKTLIAKAVAGEAGVPFFSISGSDFVEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 247 FVGVGASR-VRDLFEEA 262


>gi|291295836|ref|YP_003507234.1| ATP-dependent Clp protease ATP-binding subunit clpA [Meiothermus
           ruber DSM 1279]
 gi|290470795|gb|ADD28214.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           ruber DSM 1279]
          Length = 746

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R + GQ  A   VA A++         A LRD   P  + L  GPTGVGKT ++R+L
Sbjct: 454 ELKRAVFGQDRAVEEVASAIKLAR------AGLRDPQKPMGSYLFAGPTGVGKTELARQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A   G P ++ +++++ E            GYVG +   ++ D V
Sbjct: 508 AASLGVPLLRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTDAV 552


>gi|315452779|ref|YP_004073049.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
 gi|315131831|emb|CBY82459.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
          Length = 560

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L   L     PK +LLVGP GVGKT I++ LA  A  PF     + F +I 
Sbjct: 181 LKNPKKYQDLKIKL-----PKGVLLVGPPGVGKTMIAKALASEAKVPFFYHSGSAFVQI- 234

Query: 94  YVGRNVEQI 102
           YVG   +++
Sbjct: 235 YVGVGAKRV 243


>gi|300120569|emb|CBK20123.2| unnamed protein product [Blastocystis hominis]
          Length = 366

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA+ +G PFI ++++    + Y G + +++IR L  + 
Sbjct: 122 LPKGVLLYGPPGTGKTMLAKALAKESGVPFINLQLSTLMNM-YFGES-QKLIRALFSMC 178


>gi|158335287|ref|YP_001516459.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305528|gb|ABW27145.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 630

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263


>gi|83816138|ref|YP_445932.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294507843|ref|YP_003571901.1| cell division protein [Salinibacter ruber M8]
 gi|310943098|sp|D5HA94|FTSH2_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|83757532|gb|ABC45645.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294344171|emb|CBH24949.1| cell division protein [Salinibacter ruber M8]
          Length = 683

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A APF  V  + F E+ +VG    + +RD+   A
Sbjct: 220 VPKGVLLVGPPGTGKTLLARAVAGEANAPFFSVSGSDFMEM-FVGVGASR-VRDMFSEA 276


>gi|186682396|ref|YP_001865592.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464848|gb|ACC80649.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 621

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGSSR-VRDLFEQA 257


>gi|332297151|ref|YP_004439073.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332180254|gb|AEE15942.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 660

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF K+  + F E+ +VG    + +RDL   A
Sbjct: 239 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFKISGSDFVEM-FVGVGASR-VRDLFKQA 295


>gi|313125289|ref|YP_004035553.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312291654|gb|ADQ66114.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
            IL VGP G GKT +SR LA   G PF++V+++  T   +G   +NVE+
Sbjct: 221 KILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 269


>gi|160936160|ref|ZP_02083533.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440970|gb|EDP18694.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
          Length = 625

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRYII-----GQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +  I      G+++AK A   +   L N  +   + A+L     PK
Sbjct: 157 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 211

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 212 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 265


>gi|94986632|ref|YP_594565.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730881|emb|CAJ54244.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 627

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260


>gi|317484643|ref|ZP_07943546.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
 gi|316924117|gb|EFV45300.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
          Length = 650

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|77918603|ref|YP_356418.1| ATP-dependent zinc protease/ cell division protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77544686|gb|ABA88248.1| membrane protease FtsH catalytic subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT + R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLGRAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta]
 gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta]
          Length = 631

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|121603307|ref|YP_980636.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans
           CJ2]
 gi|120592276|gb|ABM35715.1| membrane protease FtsH catalytic subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 618

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250


>gi|113476779|ref|YP_722840.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|122964671|sp|Q10ZF7|FTSH_TRIEI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110167827|gb|ABG52367.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 667

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 235 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 291


>gi|323697697|ref|ZP_08109609.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. ND132]
 gi|323457629|gb|EGB13494.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans ND132]
          Length = 773

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S+L   + GQ +A  A+A +++ R R     A +R    P  + LL GPTGVGKT 
Sbjct: 455 KSLESDLKAVVFGQDEAVAALAKSIK-RSR-----AGMRQAGRPVGSFLLTGPTGVGKTE 508

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA++ G  F++ +++++ E   V R
Sbjct: 509 LARQLAKVLGIGFLRFDMSEYMEKHAVAR 537


>gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
 gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
          Length = 595

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 165 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEV-FVGIGASR-VRDL 217


>gi|295696093|ref|YP_003589331.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295411695|gb|ADG06187.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 536

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK ++L GP G GKT ++R +A  AG  F+    ++F E  YVG   ++ IRDL D   
Sbjct: 139 MPKGVILYGPPGTGKTLLARAVAGEAGVEFVACSGSQFVE-QYVGLGAKK-IRDLFDQVR 196

Query: 112 NIVRES 117
            I R +
Sbjct: 197 RIGRPA 202


>gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
 gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 191 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 245 FVGVGASR-VRDLFEQA 260


>gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC
           7002]
          Length = 628

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|46579689|ref|YP_010497.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602831|ref|YP_967231.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris DP4]
 gi|46449104|gb|AAS95756.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563060|gb|ABM28804.1| membrane protease FtsH catalytic subunit [Desulfovibrio vulgaris
           DP4]
 gi|311233484|gb|ADP86338.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris RCH1]
          Length = 656

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|320536058|ref|ZP_08036116.1| phage putative tail component protein [Treponema phagedenis F0421]
 gi|320147108|gb|EFW38666.1| phage putative tail component protein [Treponema phagedenis F0421]
          Length = 678

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF ++  + F E+ +VG    + +RDL   A
Sbjct: 237 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDLFKQA 293


>gi|315929039|gb|EFV08279.1| ftsH domain protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L+VGP GVGKT I++ +A  A  PF     + F EI YVG   ++ +R+L   A
Sbjct: 102 MPKGVLMVGPPGVGKTLIAKAVAGEAEVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 158


>gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
 gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
          Length = 595

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 165 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEV-FVGIGASR-VRDL 217


>gi|282601158|ref|ZP_05980957.2| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
 gi|282570064|gb|EFB75599.1| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
          Length = 750

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 38/281 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L  +IIGQ +A  AVA A++ R R     ADL     P + + VGPTGVGKT + ++LA 
Sbjct: 458 LKAHIIGQDEAVHAVAGAIK-RAR-----ADLSGRHRPASFIFVGPTGVGKTELVKQLAN 511

Query: 76  L---AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
                  P I ++++++ E   V R        L+      V      ++ E+   +   
Sbjct: 512 QLFDTVDPLISIDMSEYMEKYAVSR--------LIGSPPGYVGYDEAGQLTEKVRRHPYS 563

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
            +L   + K A  +   +  + L +G+I+D +        + D SN  I   ++ G    
Sbjct: 564 VVLFDEIEK-AHPDVMNILLQILDEGKINDAQ------GRTVDFSNTVICMTSNAG---- 612

Query: 193 SELFSKVMGSGRKKKIRMSVQ--KCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFL 249
           S   S   G G+K ++  + +  K   E +R E   R+ ++ T H  S + +E    + L
Sbjct: 613 STDQSGATGFGKKLEVASADKSLKALQEFLRPEFIGRVDEIITFHPLSQENLEKIAALML 672

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           DE+   +   + +GI ++ +  Q  L  +V  S  STKYG+
Sbjct: 673 DEYKPGL---TNHGITLTYD--QPALAAIVAQS--STKYGA 706


>gi|220904981|ref|YP_002480293.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869280|gb|ACL49615.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 676

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|160943001|ref|ZP_02090239.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445695|gb|EDP22698.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
          Length = 616

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255


>gi|123966164|ref|YP_001011245.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
 gi|123200530|gb|ABM72138.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
          Length = 584

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    + +RDL
Sbjct: 167 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVEL-FVGVGASR-VRDL 219


>gi|123430779|ref|XP_001307955.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase
           [Trichomonas vaginalis G3]
 gi|121889610|gb|EAX95025.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase
           [Trichomonas vaginalis G3]
          Length = 533

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 77  IPKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFESA 133


>gi|49246395|gb|AAT58329.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246409|gb|AAT58336.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246411|gb|AAT58337.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246415|gb|AAT58339.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 52  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108


>gi|212703544|ref|ZP_03311672.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
 gi|212673044|gb|EEB33527.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
          Length = 668

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 241


>gi|167770587|ref|ZP_02442640.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
 gi|167667182|gb|EDS11312.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
          Length = 603

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK ++A     L N  + +++ A      MPK +LLVGP G GKT +++ +A  
Sbjct: 167 VAGEDEAKESLAEIVDYLHNPDKYREIGAS-----MPKGVLLVGPPGTGKTMLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 ASVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253


>gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|49246399|gb|AAT58331.1| FtsH-like protein [Aegilops tauschii]
 gi|49246407|gb|AAT58335.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246421|gb|AAT58342.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246457|gb|AAT58360.1| FtsH-like protein [Triticum urartu]
          Length = 151

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 52  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108


>gi|332704382|ref|ZP_08424470.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554531|gb|EGJ51575.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 239


>gi|313889140|ref|ZP_07822796.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844880|gb|EFR32285.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFESA 252


>gi|295103468|emb|CBL01012.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           SL3/3]
          Length = 616

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255


>gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 267 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGIGASR-VRDLFKKA 323


>gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 221 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFGQA 277


>gi|49246405|gb|AAT58334.1| FtsH-like protein [Triticum urartu]
 gi|49246419|gb|AAT58341.1| FtsH-like protein [Aegilops tauschii]
 gi|49246423|gb|AAT58343.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246425|gb|AAT58344.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246437|gb|AAT58350.1| FtsH-like protein [Triticum urartu]
 gi|49246441|gb|AAT58352.1| FtsH-like protein [Triticum urartu]
 gi|49246443|gb|AAT58353.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246445|gb|AAT58354.1| FtsH-like protein [Triticum urartu]
 gi|49246451|gb|AAT58357.1| FtsH-like protein [Aegilops tauschii]
 gi|49246455|gb|AAT58359.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 150

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 52  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108


>gi|303240182|ref|ZP_07326702.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302592273|gb|EFL62001.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 604

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 250


>gi|258651092|ref|YP_003200248.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
 gi|258554317|gb|ACV77259.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 183 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 237 FVGVGASR-VRDLFEQA 252


>gi|49246397|gb|AAT58330.1| FtsH-like protein [Lophopyrum elongatum]
 gi|49246413|gb|AAT58338.1| FtsH-like protein [Triticum urartu]
 gi|49246429|gb|AAT58346.1| FtsH-like protein [Triticum urartu]
 gi|49246431|gb|AAT58347.1| FtsH-like protein [Aegilops tauschii]
 gi|49246433|gb|AAT58348.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246447|gb|AAT58355.1| FtsH-like protein [Triticum monococcum]
 gi|49246449|gb|AAT58356.1| FtsH-like protein [Triticum monococcum]
 gi|49246453|gb|AAT58358.1| FtsH-like protein [Aegilops tauschii]
 gi|49246459|gb|AAT58361.1| FtsH-like protein [Aegilops tauschii]
          Length = 151

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 53  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109


>gi|78356558|ref|YP_388007.1| FtsH peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218963|gb|ABB38312.1| membrane protease FtsH catalytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 665

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 655

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P  +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266


>gi|260587358|ref|ZP_05853271.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542225|gb|EEX22794.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 567

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 158 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 214


>gi|197302420|ref|ZP_03167475.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
 gi|197298318|gb|EDY32863.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
          Length = 700

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 237 VAGQDEAKESLQEVVDFLHNPEKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 291

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ YVG    + +RDL   A
Sbjct: 292 AGVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 323


>gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|49246401|gb|AAT58332.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246403|gb|AAT58333.1| FtsH-like protein [Triticum monococcum]
 gi|49246417|gb|AAT58340.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246435|gb|AAT58349.1| FtsH-like protein [Triticum monococcum]
          Length = 152

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 53  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109


>gi|331083658|ref|ZP_08332769.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403869|gb|EGG83421.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 603

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 250


>gi|315124494|ref|YP_004066498.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018216|gb|ADT66309.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           MPK +L+VGP GVGKT I++ +A  AG PF     + F EI
Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI 224


>gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ DAK+   I ++          ++  E  PKNIL  GP G GKT ++R LA     
Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGPPGTGKTMLARALATETDV 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T+   IG +VG   +QI
Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204


>gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47FAA]
          Length = 625

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRYII-----GQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +  I      G+++AK A   +   L N  +   + A+L     PK
Sbjct: 159 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 213

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 214 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 267


>gi|300868425|ref|ZP_07113046.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300333559|emb|CBN58234.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|302818219|ref|XP_002990783.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
 gi|300141344|gb|EFJ08056.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
          Length = 691

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 312


>gi|218885163|ref|YP_002434484.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756117|gb|ACL07016.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 671

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|254422833|ref|ZP_05036551.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196190322|gb|EDX85286.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 626

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFIEM-FVGVGSSR-VRDLFEQA 250


>gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|108760095|ref|YP_632507.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
 gi|108463975|gb|ABF89160.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
          Length = 674

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL   A 
Sbjct: 222 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFAQAT 279

Query: 112 N 112
           +
Sbjct: 280 S 280


>gi|49246427|gb|AAT58345.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 153

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 53  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109


>gi|302530789|ref|ZP_07283131.1| cell division protein [Streptomyces sp. AA4]
 gi|302439684|gb|EFL11500.1| cell division protein [Streptomyces sp. AA4]
          Length = 667

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 59  LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 112

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 113 FVGVGASR-VRDLFEQA 128


>gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
 gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
          Length = 662

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +++     L N  + +++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKDSLSEIVDFLHNPGKYKEIGAKV-----PKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
 gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 191 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 245 FVGVGASR-VRDLFEQA 260


>gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P  +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266


>gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ zinc ion binding [Arabidopsis
           thaliana]
 gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=AtFTSH2; AltName: Full=Protein
           VARIEGATED 2; Flags: Precursor
 gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana]
 gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana]
 gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315


>gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
 gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 193 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 247 FVGVGASR-VRDLFEQA 262


>gi|117927369|ref|YP_871920.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
 gi|310943112|sp|A0LR74|FTSH_ACIC1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|117647832|gb|ABK51934.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
          Length = 666

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  AG PF+ V  + F E+ +VG    + +RDL + A
Sbjct: 211 IPRGVLMVGPPGTGKTLMARAVAGEAGVPFLSVTGSSFVEM-FVGVGASR-VRDLFEEA 267


>gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
 gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
          Length = 668

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252


>gi|312282051|dbj|BAJ33891.1| unnamed protein product [Thellungiella halophila]
          Length = 693

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 258 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 314


>gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
 gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
          Length = 765

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A 
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQAR 276

Query: 112 N 112
           N
Sbjct: 277 N 277


>gi|257438589|ref|ZP_05614344.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198958|gb|EEU97242.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 608

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255


>gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa]
 gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 247 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 303


>gi|126437720|ref|YP_001073411.1| Mername-AA223 peptidase [Mycobacterium sp. JLS]
 gi|126237520|gb|ABO00921.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. JLS]
          Length = 784

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 236 FVGVGASR-VRDMFEQA 251


>gi|49246439|gb|AAT58351.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 154

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 54  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 110


>gi|54022362|ref|YP_116604.1| putative cell division protein [Nocardia farcinica IFM 10152]
 gi|54013870|dbj|BAD55240.1| putative cell division protein [Nocardia farcinica IFM 10152]
          Length = 796

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 187 LQNPVRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 240

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 241 FVGVGASR-VRDLFEQA 256


>gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 759

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275


>gi|207092232|ref|ZP_03240019.1| cell division protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 286

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG   +++
Sbjct: 201 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 251


>gi|166033186|ref|ZP_02236015.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
 gi|166027543|gb|EDR46300.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
          Length = 612

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 256


>gi|119492884|ref|ZP_01623933.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
 gi|119452912|gb|EAW34085.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
          Length = 618

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 243


>gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P  +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266


>gi|49246461|gb|AAT58362.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 52  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108


>gi|42525986|ref|NP_971084.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|41816036|gb|AAS10965.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|325475667|gb|EGC78843.1| cell division protein FtsH [Treponema denticola F0402]
          Length = 658

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  AG PF ++  + F E+ +VG    + +RDL
Sbjct: 237 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDL 289


>gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|326386213|ref|ZP_08207837.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209438|gb|EGD60231.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 784

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ  A   +A A++         A LRD   P  + L  GPTGVGKT ++R L
Sbjct: 466 DLKRMVFGQDKAIEVLASAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARSL 519

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A + G P  + +++++ E            GYVG +   ++ D +D   + V
Sbjct: 520 ANIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHCV 571


>gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315


>gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 627

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260


>gi|218779932|ref|YP_002431250.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761316|gb|ACL03782.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfatibacillum alkenivorans AK-01]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 18/106 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L + + GQ +A + VA A++ R R     A L  +  P  + L  GPTGVGKT ++++
Sbjct: 452 SDLKKMVFGQDEAVQTVATAIK-RSR-----AGLASQERPVGSFLFTGPTGVGKTEVAKQ 505

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           LA+  G  F++ +++++ E            GYVG +   ++ D V
Sbjct: 506 LAQTLGIAFLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDAV 551


>gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 233 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFGQA 289


>gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 631

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263


>gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +++     L N  + +++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKDSLSEIVDFLHNPGKYKEIGAKV-----PKGVLLVGPPGTGKTLMAQAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|302388370|ref|YP_003824192.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198998|gb|ADL06569.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 606

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 192 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 246


>gi|198424141|ref|XP_002124796.1| PREDICTED: similar to paraplegin [Ciona intestinalis]
          Length = 743

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           MPK  LL GP GVGKT +++ +A  +G PFI    + F E+  G   + V Q+  +   +
Sbjct: 305 MPKGCLLTGPPGVGKTLLAKAVASESGVPFIPKSGSDFVELIGGLGAKRVRQLFENARKM 364

Query: 110 AINIV 114
           A  IV
Sbjct: 365 APCIV 369


>gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 632

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 209 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 265


>gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
 gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 598

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 184 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASR-VRDL 236


>gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2]
 gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus
           maripaludis S2]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++GQ DAK+   I ++          +L  E  PKNIL  GP G GKT ++R LA     
Sbjct: 128 VVGQIDAKKKCKIVIKYLEN-----PELFGEWAPKNILFYGPPGTGKTMLARALATETDV 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T+   IG +VG   +QI
Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204


>gi|24987367|pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
          Length = 278

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F E+ 
Sbjct: 59  LKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM- 112

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 113 FVGVGAAR-VRDLFETA 128


>gi|296392854|ref|YP_003657738.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
 gi|296180001|gb|ADG96907.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
          Length = 698

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 189 LQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 243 FVGVGASR-VRDLFEQA 258


>gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262


>gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
          Length = 765

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A 
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQAR 276

Query: 112 N 112
           N
Sbjct: 277 N 277


>gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
 gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
          Length = 966

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P  +LL GP G GKT ++R +A  AG PF     T+F E+ +VG    + IR+L D A 
Sbjct: 400 IPAGVLLCGPPGTGKTLLARCVAGEAGVPFFSCAGTEFMEM-FVGVGAAR-IRNLFDQAK 457

Query: 112 NIV 114
            + 
Sbjct: 458 KVA 460


>gi|311893429|dbj|BAJ25846.1| ATP-dependent zinc metalloprotease ThFtsH8 [Eutrema salsugineum]
          Length = 693

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 258 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 314


>gi|255281636|ref|ZP_05346191.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255267703|gb|EET60908.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK A   +   L N  + Q++ A      MPK  LLVGP G GKT +++ +A  
Sbjct: 183 VAGEDEAKEALMEIVNYLHNPEKYQKIGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 237

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ + G    + +RDL   A
Sbjct: 238 ARVPFFSISGSEFVEL-FAGMGAAK-VRDLFKQA 269


>gi|225571155|ref|ZP_03780153.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
 gi|225159986|gb|EEG72605.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
          Length = 615

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 256


>gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana]
          Length = 586

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 150 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 202


>gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 510

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 87  IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 143


>gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           L2-6]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|303287446|ref|XP_003063012.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455648|gb|EEH52951.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 284

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P   LLVGP G GKT +++ +A  AG PF  V  ++F E+ +VGR   ++
Sbjct: 140 LPTGCLLVGPPGTGKTLLAKAVAGEAGVPFFSVAASEFVEL-FVGRGAARV 189


>gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262


>gi|254460098|ref|ZP_05073514.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2083]
 gi|206676687|gb|EDZ41174.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 775

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 462 KDLEASLKRVVFGQDDAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 VAKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572


>gi|170593977|ref|XP_001901740.1| AAA ATPase [Brugia malayi]
 gi|158590684|gb|EDP29299.1| AAA ATPase, putative [Brugia malayi]
          Length = 353

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           + + +RN +++  L ++L     PK +LL GP G GKT +++ +AR A A FI ++V+  
Sbjct: 101 IPLKIRNIYKKLALSSNLLSP--PKGVLLYGPPGCGKTLLAKVIARAANARFINLQVSSL 158

Query: 90  TEIGY 94
            +  Y
Sbjct: 159 CDKWY 163


>gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262


>gi|291568483|dbj|BAI90755.1| ClpB protein [Arthrospira platensis NIES-39]
          Length = 928

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 603 QLESHLHRRVIGQQQAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 656

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA     +    I+++++++ E   V R V
Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689


>gi|146098803|ref|XP_001468475.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase [Leishmania
           infantum]
 gi|134072843|emb|CAM71559.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania
           infantum JPCM5]
 gi|322502510|emb|CBZ37593.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 623

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58
           K  F F     VS   + + G  +AK  V      L++  R Q L A L     PK +LL
Sbjct: 157 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVLL 211

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP GVGKT +++ +A  A  PF+    ++F E+ YVG   ++ +R+L   A N 
Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264


>gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
 gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+  VG+   + +RDL D A
Sbjct: 276 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEV-LVGQGARR-VRDLFDKA 332


>gi|301061956|ref|ZP_07202683.1| cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300443939|gb|EFK07977.1| cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +G PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 189 MPKGVLLVGPPGTGKTLLAKAVAGESGVPFFSLSGSEFVEM-FVGLGAAR-VRDLFTQA 245


>gi|284053803|ref|ZP_06384013.1| endopeptidase Clp ATP-binding chain [Arthrospira platensis str.
           Paraca]
          Length = 320

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 194 QLESHLHRRVIGQQQAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 247

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA     +    I+++++++ E   V R V
Sbjct: 248 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 280


>gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG P+      +F EI  VG+   + +RDL   A
Sbjct: 290 LPKGVLLVGPPGTGKTLLARAVAGEAGVPYFHAAGPEFDEI-LVGQGARR-VRDLFKAA 346


>gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila]
          Length = 697

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 261 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 317


>gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315


>gi|288870055|ref|ZP_06112759.2| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
 gi|288868612|gb|EFD00911.1| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
          Length = 606

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 194 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 248


>gi|197301564|ref|ZP_03166637.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
 gi|197299294|gb|EDY33821.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
          Length = 1169

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IG ++AK    +A    + +      +    +PK +LL GP G GKT ++R +A  +  
Sbjct: 737 VIGAENAK--TELAWFTEFLKNPKKYSMEGRRLPKGVLLYGPPGTGKTMLARAMAGESDV 794

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIR 104
            F++   T+F    YVG++ E I R
Sbjct: 795 AFLETSATQFMN-SYVGKSEENIRR 818


>gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 631

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 208 IPKGVLLVGPPGTGKTMLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 260


>gi|303249374|ref|ZP_07335600.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           fructosovorans JJ]
 gi|302489212|gb|EFL49177.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           fructosovorans JJ]
          Length = 757

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71
            EL   I GQ  A  A+A A LR+R       A L ++  P  + LL GPTGVGKT +++
Sbjct: 444 GELKDLIFGQDQAVDAIAKAILRSR-------AGLANDCKPTGSFLLAGPTGVGKTEMAK 496

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGR 97
           +LA + G  F++ +++++ E   V R
Sbjct: 497 QLAAVLGINFVRFDMSEYMEKHAVAR 522


>gi|254420804|ref|ZP_05034528.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           sp. BAL3]
 gi|196186981|gb|EDX81957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           sp. BAL3]
          Length = 767

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+  +L R + GQ+ A   V+ A++         A LRD   P  + L  GPTGVGK
Sbjct: 455 SLRELEVDLKRAVFGQEQAIEQVSAAMK------LARAGLRDPNKPIGSFLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           T ++++LA   G    + +++++ E            GYVG +   ++ D VD
Sbjct: 509 TEVAKQLASTLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 561


>gi|167759637|ref|ZP_02431764.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
 gi|167662763|gb|EDS06893.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
          Length = 614

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 255


>gi|46199430|ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55981461|ref|YP_144758.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|81363931|sp|Q5SI82|FTSH_THET8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46197056|gb|AAS81470.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55772874|dbj|BAD71315.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 624

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP GVGKT ++R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244


>gi|37522147|ref|NP_925524.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213147|dbj|BAC90519.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 630

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262


>gi|24987364|pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
 gi|24987365|pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
           From Thermus Thermophilus
 gi|24987366|pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
           Thermus Thermophilus
          Length = 254

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F E+ 
Sbjct: 35  LKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM- 88

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 89  FVGVGAAR-VRDLFETA 104


>gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 759

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275


>gi|302785487|ref|XP_002974515.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
 gi|300158113|gb|EFJ24737.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
          Length = 597

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 166 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 218


>gi|296415338|ref|XP_002837347.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633211|emb|CAZ81538.1| unnamed protein product [Tuber melanosporum]
          Length = 819

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   +++
Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEV-YVGVGAKRV 426


>gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
 gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 199 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 252

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 253 FVGVGASR-VRDLFQQA 268


>gi|255084293|ref|XP_002508721.1| predicted protein [Micromonas sp. RCC299]
 gi|226523998|gb|ACO69979.1| predicted protein [Micromonas sp. RCC299]
          Length = 474

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P   LLVGP G GKT +++ +A  AG PF  V  ++F E+ +VGR   ++
Sbjct: 185 LPTGCLLVGPPGTGKTLLAKAVAGEAGVPFFAVAASEFVEL-FVGRGAARV 234


>gi|225568885|ref|ZP_03777910.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM
           15053]
 gi|225162384|gb|EEG75003.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM
           15053]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  Q+ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 178 VAGQDEAKESLQEVVDFLHNPGKYTQIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 232

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 233 AKVPFFSLTGSSFVEM-YVGVGASR-VRDLFKQA 264


>gi|331092500|ref|ZP_08341322.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400721|gb|EGG80324.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 251


>gi|326431627|gb|EGD77197.1| ATP-dependent Zn protease [Salpingoeca sp. ATCC 50818]
          Length = 750

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF     ++F E+ YVG    + +RDL   A
Sbjct: 327 LPKGVLLMGPPGTGKTLLARAVAGEAGVPFFYSSGSEFDEM-YVGVGARR-VRDLFAAA 383


>gi|325663695|ref|ZP_08152099.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087217|ref|ZP_08336287.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470188|gb|EGC73421.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408903|gb|EGG88364.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 609

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 253


>gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|323142056|ref|ZP_08076904.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322413443|gb|EFY04314.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 185 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 241


>gi|291087305|ref|ZP_06346033.2| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
 gi|291075290|gb|EFE12654.1| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
          Length = 597

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 175 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 231


>gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1]
          Length = 620

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ++AK A   +   L N  +  ++ A L     PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258


>gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 417

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F EI YVG    + IRDL   A
Sbjct: 207 IPKGVLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEI-YVGVGASR-IRDLFQKA 263


>gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 630

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 258


>gi|325184426|emb|CCA18918.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 675

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF     ++F E+ YVG    + +RDL + A
Sbjct: 261 LPKGVLLTGPPGTGKTLLARAIAGEASVPFFYASGSEFEEM-YVGVGARR-VRDLFEAA 317


>gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
 gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
          Length = 606

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++  GP G GKT  ++ LA  AG PF  V  + F E  YVG    + +RD+ ++A
Sbjct: 204 LPKGVIFYGPPGTGKTLFAKALAGEAGVPFFSVSGSDFVE-KYVGTGASR-VRDMFNLA 260


>gi|299469796|emb|CBN76650.1| FtsH protease [Ectocarpus siliculosus]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ++L GP G GKT I+R +A  AG PFI    ++F E+ +VG    + +RDL D A
Sbjct: 298 IPRGVILEGPPGTGKTLIARAVAGEAGVPFIATSGSEFVEM-FVGVGAAR-VRDLFDKA 354


>gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 694

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 189 LQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 243 FVGVGASR-VRDLFEQA 258


>gi|291520851|emb|CBK79144.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 677

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+++K   R +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 182 VAGQEESKESLREIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 237 AGVPFFSLSGSDFVEM-FVGVGASR-VRDL 264


>gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
          Length = 695

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   V   L    + +++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|24211982|sp|Q8T5T1|MDN1_GIALA RecName: Full=Midasin; AltName: Full=MIDAS-containing protein
 gi|20147777|gb|AAM12656.1|AF494287_1 midasin [Giardia intestinalis]
          Length = 4835

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 13/119 (10%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109
           +LLVGPTG+GKT   + +AR  G     V ++  T+      GYV   +++I+R+L D  
Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDAADLLGGYVPATLDRILRNLYDAI 411

Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDK 163
             ++ +    R+++  V E     AE+ I   L   +TA S  R+V RK++  GE+ ++
Sbjct: 412 TGSLGLYISVRKNQIFVTELHKSYAEKDIAKFLANCETALSGMRQVLRKEV--GEVVEQ 468


>gi|315498281|ref|YP_004087085.1| ATP-dependent clp protease, ATP-binding subunit clpa [Asticcacaulis
           excentricus CB 48]
 gi|315416293|gb|ADU12934.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Asticcacaulis
           excentricus CB 48]
          Length = 769

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ ++L R + GQ +A   ++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 460 RDLTNDLQRVVFGQDEAIEQLSAAMKLAR------AGLRDANKPIGSYLFSGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++L++  G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLSQTLGIELLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 564


>gi|300855649|ref|YP_003780633.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           ljungdahlii DSM 13528]
 gi|300435764|gb|ADK15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Clostridium
           ljungdahlii DSM 13528]
          Length = 746

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L   I GQ +A +AV  A+ R+R    +      D     N+L VGPTGVGKT IS++L+
Sbjct: 454 LKEKIFGQDEAVKAVVRAIKRSRAGFNE------DNKTVANLLFVGPTGVGKTEISKQLS 507

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
                P I+ +++++ E   V R
Sbjct: 508 NALNIPLIRFDMSEYQEKHTVAR 530


>gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 620

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ++AK A   +   L N  +  ++ A L     PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258


>gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302


>gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 503

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|159108534|ref|XP_001704537.1| Midasin [Giardia lamblia ATCC 50803]
 gi|157432603|gb|EDO76863.1| Midasin [Giardia lamblia ATCC 50803]
          Length = 4835

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 13/119 (10%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109
           +LLVGPTG+GKT   + +AR  G     V ++  T+      GYV   +++I+R+L D  
Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDAADLLGGYVPATLDRILRNLYDAI 411

Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDK 163
             ++ +    R+++  V E     AE+ I   L   +TA S  R+V RK++  GE+ ++
Sbjct: 412 TGSLGLYISVRKNQIFVTELHKSYAEKDIAKFLANCETALSGMRQVLRKEV--GEVVEQ 468


>gi|8051696|dbj|BAA96090.1| FtsH [Thermus thermophilus]
          Length = 624

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP GVGKT ++R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244


>gi|291528586|emb|CBK94172.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 702

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  R   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ ++G    + +RDL
Sbjct: 260 AGVPFFSLAGSDFVEM-FIGVGASR-VRDL 287


>gi|306526251|sp|P54813|YME1_CAEEL RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|224490507|emb|CAA88955.2| C. elegans protein M03C11.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+  VG+   + +RDL D A
Sbjct: 280 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 336


>gi|222099058|ref|YP_002533626.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359]
 gi|221571448|gb|ACM22260.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245


>gi|110668990|ref|YP_658801.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790]
 gi|109626737|emb|CAJ53204.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790]
          Length = 491

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
           IL VGP G GKT +SR LA   G PF++V+++  T   +G   +NVE+
Sbjct: 246 ILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 293


>gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A   V   L +  R  ++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251


>gi|295688127|ref|YP_003591820.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756]
 gi|295430030|gb|ADG09202.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756]
          Length = 626

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|110591249|pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591250|pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591251|pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591252|pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591253|pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591254|pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
          Length = 499

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP GVGKT ++R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 63  IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 119


>gi|17554264|ref|NP_499298.1| YME1-Like (Yeast Mitochondrial Escape) AAA protease family member
           (ymel-1) [Caenorhabditis elegans]
          Length = 676

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+  VG+   + +RDL D A
Sbjct: 233 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 289


>gi|313888858|ref|ZP_07822518.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845031|gb|EFR32432.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A++     L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 171 VAGQDEAKEALSELVDFLHNPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           A  PF  +  + F E+ +VG    + +RDL   A+
Sbjct: 226 AEVPFFSISGSAFVEM-FVGLGAAK-VRDLFKQAV 258


>gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 612

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL
Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDL 251


>gi|302876586|ref|YP_003845219.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307687261|ref|ZP_07629707.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302579443|gb|ADL53455.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 188 IPKGMLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFESA 244


>gi|297563885|ref|YP_003682858.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848334|gb|ADH70352.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 685

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|113953333|ref|YP_729587.1| cell division protein FtsH [Synechococcus sp. CC9311]
 gi|113880684|gb|ABI45642.1| cell division protein FtsH [Synechococcus sp. CC9311]
          Length = 617

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250


>gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
 gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
          Length = 759

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275


>gi|300865379|ref|ZP_07110188.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
 gi|300336614|emb|CBN55338.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
          Length = 623

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGSAR-VRDLFEQA 256


>gi|195614112|gb|ACG28886.1| FtsH6 - Zea mays FtsH protease
          Length = 691

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 316


>gi|220908960|ref|YP_002484271.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219865571|gb|ACL45910.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 631

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 254


>gi|219667350|ref|YP_002457785.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219537610|gb|ACL19349.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 608

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L +  R   + ADL     PK  LLVGP G GKT +++ +A  
Sbjct: 170 VAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PKGALLVGPPGTGKTLLAKAVAGE 224

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 225 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 256


>gi|332654867|ref|ZP_08420609.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516210|gb|EGJ45818.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VGR   + +RDL   A
Sbjct: 199 LPKGALLVGPPGTGKTLLAKAVAGEANVPFFSIAGSEFVEM-FVGRGAAK-VRDLFKQA 255


>gi|212274447|ref|NP_001130462.1| hypothetical protein LOC100191560 [Zea mays]
 gi|194689194|gb|ACF78681.1| unknown [Zea mays]
          Length = 691

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 316


>gi|253700538|ref|YP_003021727.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251775388|gb|ACT17969.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 598

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MP  +LLVGP G GKT ++R +A  A  PF  +  ++F E+ YVG    + +RDL
Sbjct: 179 MPTGVLLVGPPGTGKTLLARAVAGEADVPFFSISGSEFVEM-YVGVGASR-VRDL 231


>gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
 gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A   V   L +  R  ++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251


>gi|89896820|ref|YP_520307.1| hypothetical protein DSY4074 [Desulfitobacterium hafniense Y51]
 gi|89336268|dbj|BAE85863.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L +  R   + ADL     PK  LLVGP G GKT +++ +A  
Sbjct: 173 VAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PKGALLVGPPGTGKTLLAKAVAGE 227

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 228 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 259


>gi|311070716|ref|YP_003975639.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
 gi|310871233|gb|ADP34708.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
 gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLYGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 247


>gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
 gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
          Length = 684

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLIARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|239617940|ref|YP_002941262.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
 gi|310943134|sp|C5CES8|FTSH_KOSOT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|239506771|gb|ACR80258.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 196 MPKGILLVGPPGTGKTLLARAVAGEANVPFFYISGSDFVEL-FVGVGAAR-VRDLFSQA 252


>gi|254441332|ref|ZP_05054825.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
 gi|198251410|gb|EDY75725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|170288157|ref|YP_001738395.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2]
 gi|170175660|gb|ACB08712.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245


>gi|154684588|ref|YP_001419749.1| hypothetical protein RBAM_000800 [Bacillus amyloliquefaciens FZB42]
 gi|154350439|gb|ABS72518.1| FtsH [Bacillus amyloliquefaciens FZB42]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 689

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL++GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGILMIGPPGTGKTYLTKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 253


>gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 660

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 239 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 291


>gi|304440187|ref|ZP_07400077.1| ATP-dependent metalloprotease FtsH [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371236|gb|EFM24852.1| ATP-dependent metalloprotease FtsH [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 195 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFLMSGSDFVEM-FVGVGASR-VRDLFDTA 251


>gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 676

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302


>gi|308171960|ref|YP_003918665.1| cell-division protein and general stress protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604824|emb|CBI41195.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens DSM 7]
 gi|328910030|gb|AEB61626.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens LL3]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|153854743|ref|ZP_01995977.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
 gi|149752650|gb|EDM62581.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
          Length = 510

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 95  IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 151


>gi|169627637|ref|YP_001701286.1| cell division protein FtsH-like protein [Mycobacterium abscessus
           ATCC 19977]
 gi|169239604|emb|CAM60632.1| Cell division protein FtsH homolog [Mycobacterium abscessus]
          Length = 750

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 183 LQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 237 FVGVGASR-VRDLFEQA 252


>gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera]
          Length = 676

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302


>gi|220919476|ref|YP_002494780.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957330|gb|ACL67714.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 618

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249


>gi|126725796|ref|ZP_01741638.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2150]
 gi|126705000|gb|EBA04091.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2150]
          Length = 775

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 462 RDLEGSLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 572


>gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 622

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 200 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 256


>gi|328551770|gb|AEB22262.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens TA208]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 662

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|328947523|ref|YP_004364860.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
 gi|328447847|gb|AEB13563.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
          Length = 689

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT ++R +A  AG PF ++  + F E+ +VG    + +RDL
Sbjct: 243 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDL 295


>gi|302836203|ref|XP_002949662.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
 gi|300265021|gb|EFJ49214.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
          Length = 692

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 253 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDLFKKA 309


>gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
 gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A   V   L +  R  ++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251


>gi|197124755|ref|YP_002136706.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196174604|gb|ACG75577.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 618

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249


>gi|157273412|gb|ABV27311.1| cell division protein FtsH [Candidatus Chloracidobacterium
           thermophilum]
          Length = 618

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFIEM-FVGVGAAR-VRDLFEQA 245


>gi|153954953|ref|YP_001395718.1| hypothetical protein CKL_2335 [Clostridium kluyveri DSM 555]
 gi|219855398|ref|YP_002472520.1| hypothetical protein CKR_2055 [Clostridium kluyveri NBRC 12016]
 gi|146347811|gb|EDK34347.1| ClpA [Clostridium kluyveri DSM 555]
 gi|219569122|dbj|BAH07106.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 746

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           ++L VGPTGVGKT IS++LA+    PFI+ +++++ E   V R V
Sbjct: 488 SLLFVGPTGVGKTEISKQLAKALNIPFIRFDMSEYQEKHTVARLV 532


>gi|148269483|ref|YP_001243943.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1]
 gi|281411799|ref|YP_003345878.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10]
 gi|147735027|gb|ABQ46367.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1]
 gi|281372902|gb|ADA66464.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245


>gi|116075678|ref|ZP_01472937.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
 gi|116066993|gb|EAU72748.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
          Length = 615

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|167648378|ref|YP_001686041.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31]
 gi|167350808|gb|ABZ73543.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31]
          Length = 626

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|304393349|ref|ZP_07375277.1| cell division protease FtsH [Ahrensia sp. R2A130]
 gi|303294356|gb|EFL88728.1| cell division protease FtsH [Ahrensia sp. R2A130]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT  +R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 MPHGVLLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|197118688|ref|YP_002139115.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088048|gb|ACH39319.1| cell division ATP-dependent zinc protease lipoprotein FtsH
           [Geobacter bemidjiensis Bem]
          Length = 599

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MP  +LLVGP G GKT ++R +A  A  PF  +  ++F E+ YVG    + +RDL
Sbjct: 179 MPTGVLLVGPPGTGKTLLARAVAGEADVPFFSISGSEFVEM-YVGVGASR-VRDL 231


>gi|16127456|ref|NP_422020.1| cell division protein FtsH [Caulobacter crescentus CB15]
 gi|221236269|ref|YP_002518706.1| cell division protein FtsH [Caulobacter crescentus NA1000]
 gi|310943123|sp|B8H444|FTSH_CAUCN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|13424908|gb|AAK25188.1| cell division protein FtsH [Caulobacter crescentus CB15]
 gi|220965442|gb|ACL96798.1| cell division protein ftsH [Caulobacter crescentus NA1000]
          Length = 626

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|66827443|ref|XP_647076.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
 gi|60475264|gb|EAL73199.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
          Length = 720

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           R+ +MPK ILLVGP G GKT +++ LA  A   FI +  ++F E  +VG   ++ +R+L 
Sbjct: 192 RNIVMPKGILLVGPPGTGKTLLAKSLAGEARVSFITINGSEFEE-AFVGVGAKR-VRELF 249

Query: 108 DVA 110
           + A
Sbjct: 250 EAA 252


>gi|194017983|ref|ZP_03056590.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
 gi|194010320|gb|EDW19895.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
          Length = 586

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 145 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 201


>gi|153007227|ref|YP_001381552.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152030800|gb|ABS28568.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 623

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 MPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 253


>gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|325970630|ref|YP_004246821.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324025868|gb|ADY12627.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 651

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF K+    F E+ +VG    + +RDL
Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFKMSGADFVEM-FVGVGAAR-VRDL 292


>gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 371

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ DAK+   I ++          ++  E  PKNIL  GP G GKT ++R LA     
Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGPPGTGKTMLARALATETEV 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T+   IG +VG   +QI
Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204


>gi|86160657|ref|YP_467442.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777168|gb|ABC84005.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249


>gi|15643346|ref|NP_228390.1| cell division protein FtsH [Thermotoga maritima MSB8]
 gi|81553136|sp|Q9WZ49|FTSH_THEMA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|4981098|gb|AAD35665.1|AE001733_2 cell division protein FtsH [Thermotoga maritima MSB8]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245


>gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
 gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
          Length = 456

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  + +++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 208 VAGQDEAKESLQEVVDFLHNPKKYREIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 262

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 263 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 290


>gi|159027910|emb|CAO89717.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 600

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 178 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 230


>gi|300863957|ref|ZP_07108871.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300338031|emb|CBN54017.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 213 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 269


>gi|284043135|ref|YP_003393475.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
 gi|310943084|sp|D3F124|FTSH1_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|283947356|gb|ADB50100.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
          Length = 653

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 677

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   V   L    + +++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|157690851|ref|YP_001485313.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
 gi|157679609|gb|ABV60753.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|17229814|ref|NP_486362.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
 gi|54035877|sp|Q8YUL9|CLPB1_ANASP RecName: Full=Chaperone protein ClpB 1
 gi|17131414|dbj|BAB74021.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
          Length = 880

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR-RAR-----AGMKDPNRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+    A    ++++++++ E   V R V
Sbjct: 624 ARALAQFLFDADDALVRLDMSEYMEKHSVSRLV 656


>gi|300088219|ref|YP_003758741.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527952|gb|ADJ26420.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R Q L A +     PK +LL+G  G GKT ++R +A  AG PF  +  ++F E+ 
Sbjct: 177 LKSRERFQALGARI-----PKGVLLIGYPGTGKTLLARAIAGEAGVPFFSISGSEFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 231 FVGVGASR-VRDLFEQA 246


>gi|225573964|ref|ZP_03782609.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038781|gb|EEG49027.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
          Length = 595

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 180 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 234


>gi|218133177|ref|ZP_03461981.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992050|gb|EEC58054.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
          Length = 616

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK A   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 168 VAGQEEAKEALTEIVDFLHNPDKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 222

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 223 ADVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|210613790|ref|ZP_03289904.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
 gi|210150999|gb|EEA82007.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
          Length = 605

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 245


>gi|291530324|emb|CBK95909.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum 70/3]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 189 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 243 FVGVGASR-VRDLFDQA 258


>gi|160935941|ref|ZP_02083315.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441183|gb|EDP18900.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 604

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 248


>gi|284048929|ref|YP_003399268.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953150|gb|ADB47953.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 186 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 242


>gi|258405490|ref|YP_003198232.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfohalobium retbaense DSM 5692]
 gi|257797717|gb|ACV68654.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfohalobium retbaense DSM 5692]
          Length = 747

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL   + GQ  A   +  +++ R R     A LR+   P  N LLVGPTGVGKT ++++
Sbjct: 443 SELKGVVFGQDKAVSVIGQSIK-RSR-----AGLREAGKPVGNFLLVGPTGVGKTELAKQ 496

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           L+ + G  F++ +++++ E   V R
Sbjct: 497 LSNVLGIHFMRFDMSEYMEKHAVAR 521


>gi|157163907|ref|YP_001467283.1| putative cell division protease FtsH-like protein [Campylobacter
           concisus 13826]
 gi|112801847|gb|EAT99191.1| putative Cell division protease FtsH homolog [Campylobacter
           concisus 13826]
          Length = 641

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 208 IPKGILLVGPPGTGKTLLARAVAGEASVPFFSMSASSFIEM-FVGVGASR-VRDLFENA 264


>gi|157875629|ref|XP_001686199.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase
 gi|68129273|emb|CAJ07813.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain
           Friedlin]
          Length = 623

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58
           K  F F     VS   + + G  +AK  V      L++  R Q L A L     PK +LL
Sbjct: 157 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPERYQTLGAKL-----PKGVLL 211

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP GVGKT +++ +A  A  PF+    ++F E+ YVG   ++ +R+L   A N 
Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264


>gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 254

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.]
          Length = 609

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|294631641|ref|ZP_06710201.1| cell division protein FtsH [Streptomyces sp. e14]
 gi|292834974|gb|EFF93323.1| cell division protein FtsH [Streptomyces sp. e14]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 201 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 260

Query: 110 AINIV 114
           A +I+
Sbjct: 261 APSII 265


>gi|291557137|emb|CBL34254.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 189 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 243 FVGVGASR-VRDLFDQA 258


>gi|90109139|pdb|2CE7|A Chain A, Edta Treated
 gi|90109140|pdb|2CE7|B Chain B, Edta Treated
 gi|90109141|pdb|2CE7|C Chain C, Edta Treated
 gi|90109142|pdb|2CE7|D Chain D, Edta Treated
 gi|90109143|pdb|2CE7|E Chain E, Edta Treated
 gi|90109144|pdb|2CE7|F Chain F, Edta Treated
 gi|90109145|pdb|2CEA|A Chain A, Wildtype
 gi|90109146|pdb|2CEA|B Chain B, Wildtype
 gi|90109147|pdb|2CEA|C Chain C, Wildtype
 gi|90109148|pdb|2CEA|D Chain D, Wildtype
 gi|90109149|pdb|2CEA|E Chain E, Wildtype
 gi|90109150|pdb|2CEA|F Chain F, Wildtype
          Length = 476

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 48  MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 100


>gi|84501656|ref|ZP_00999828.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
 gi|84390277|gb|EAQ02836.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 604

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|253581057|ref|ZP_04858318.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847720|gb|EES75689.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 600

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 180 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 234


>gi|159478022|ref|XP_001697103.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158274577|gb|EDP00358.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 689

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  V  ++F E+ +VG    + +RDL
Sbjct: 248 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDL 300


>gi|296329571|ref|ZP_06872057.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672768|ref|YP_003864439.1| cell division protein and general stress protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296153314|gb|EFG94177.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411011|gb|ADM36129.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|167751542|ref|ZP_02423669.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
 gi|167655350|gb|EDR99479.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
          Length = 661

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 201 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 254

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 255 FVGVGASR-VRDLFDQA 270


>gi|114765727|ref|ZP_01444825.1| ATP-dependent metalloprotease FtsH [Pelagibaca bermudensis
           HTCC2601]
 gi|114541944|gb|EAU44979.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. HTCC2601]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX]
 gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41
           [Thermobifida fusca YX]
          Length = 682

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 183 LQNPGKFQSLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 237 FVGVGASR-VRDLFEQA 252


>gi|268574816|ref|XP_002642387.1| C. briggsae CBR-YMEL-1 protein [Caenorhabditis briggsae]
 gi|187025389|emb|CAP35857.1| CBR-YMEL-1 protein [Caenorhabditis briggsae AF16]
          Length = 670

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+  VG+   + +RDL D A
Sbjct: 227 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 283


>gi|332665521|ref|YP_004448309.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334335|gb|AEE51436.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
          Length = 665

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 680

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 227 IPKGVLLVGPPGTGKTLMAKAIAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 279


>gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 611

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 249


>gi|126737231|ref|ZP_01752966.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6]
 gi|126721816|gb|EBA18519.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|303235059|ref|ZP_07321683.1| Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493914|gb|EFL53696.1| Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|302380252|ref|ZP_07268724.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3]
 gi|302312035|gb|EFK94044.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|166364178|ref|YP_001656451.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166086551|dbj|BAG01259.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 209 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 261


>gi|123968339|ref|YP_001009197.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
 gi|123198449|gb|ABM70090.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|153005199|ref|YP_001379524.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028772|gb|ABS26540.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|52078564|ref|YP_077355.1| cell-division protein and general stress protein [Bacillus
           licheniformis ATCC 14580]
 gi|52783926|ref|YP_089755.1| hypothetical protein BLi00085 [Bacillus licheniformis ATCC 14580]
 gi|319648593|ref|ZP_08002807.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
 gi|52001775|gb|AAU21717.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus licheniformis ATCC 14580]
 gi|52346428|gb|AAU39062.1| FtsH [Bacillus licheniformis ATCC 14580]
 gi|317389360|gb|EFV70173.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 266


>gi|119963542|ref|YP_945966.1| cell division protein (ftsH) [Arthrobacter aurescens TC1]
 gi|119950401|gb|ABM09312.1| putative cell division protein (ftsH) [Arthrobacter aurescens TC1]
          Length = 689

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|16077137|ref|NP_387950.1| cell-division protein and general stress protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221307879|ref|ZP_03589726.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312201|ref|ZP_03594006.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317134|ref|ZP_03598428.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321397|ref|ZP_03602691.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313739|ref|YP_004206026.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
 gi|585159|sp|P37476|FTSH_BACSU RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|467458|dbj|BAA05304.1| cell division protein [Bacillus subtilis]
 gi|2632336|emb|CAB11845.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482441|dbj|BAI83516.1| cell division protease FtsH [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020013|gb|ADV94999.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249


>gi|255024033|ref|ZP_05296019.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes FSL J1-208]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 19/159 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 42  KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 95

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           + R LAR L G     I++++++F E   V +        L+      V      ++ E+
Sbjct: 96  LGRTLARELFGTSEAMIRLDMSEFMEKHSVSK--------LIGSPPGYVGHEEAGQLTEK 147

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              N    IL   + K A  + + +F + L DG ++D +
Sbjct: 148 VRRNPYSIILLDEIEK-AHPDVQHMFLQILEDGRLTDSQ 185


>gi|254466957|ref|ZP_05080368.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
 gi|206687865|gb|EDZ48347.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|163738353|ref|ZP_02145768.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
 gi|163742230|ref|ZP_02149618.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161384560|gb|EDQ08941.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161388274|gb|EDQ12628.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 678

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   V   L    + +++ A     ++PK +LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|313234214|emb|CBY10282.1| unnamed protein product [Oikopleura dioica]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ ILL GP G GKT I++ +A  AG PF+    ++F E+ YVG   ++ IR L + A 
Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKR-IRKLFEQAR 256

Query: 112 N 112
           N
Sbjct: 257 N 257


>gi|220911094|ref|YP_002486403.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
 gi|219857972|gb|ACL38314.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
          Length = 687

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|169824691|ref|YP_001692302.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328]
 gi|167831496|dbj|BAG08412.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 336

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           ++G ++AKRA ++    L+N       P + RD   PK +L  GPTG GKT  +R +A  
Sbjct: 92  VVGHEEAKRACSLLVEYLKN-------PEEFRD-WAPKTVLFYGPTGTGKTHTARAVAGE 143

Query: 77  AGAPFIKVEVTKFTEIG-YVGRNVEQIIR 104
           A  P + +   +   +G YVG   E+I R
Sbjct: 144 AKVPLLHMNAAEI--LGKYVGEASERIRR 170


>gi|2492515|sp|Q39444|FTSH_CAPAN RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|929013|emb|CAA62084.1| ATPase [Capsicum annuum]
          Length = 662

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT ++R +A  AG PF     ++F E+ +VG
Sbjct: 262 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVG 305


>gi|260753078|ref|YP_003225971.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258552441|gb|ACV75387.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A + +A A++         A LR+   P  + L  GPTGVGKT ++R+
Sbjct: 459 TDLKRVVFGQDKAIKTLASAIKLSR------AGLREMHKPIGSYLFSGPTGVGKTEVARQ 512

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA L G P  + +++++ E            GYVG +   ++ D ++
Sbjct: 513 LASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIE 559


>gi|239629120|ref|ZP_04672151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519266|gb|EEQ59132.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 604

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 248


>gi|126725519|ref|ZP_01741361.1| FtsH [Rhodobacterales bacterium HTCC2150]
 gi|126704723|gb|EBA03814.1| FtsH [Rhodobacterales bacterium HTCC2150]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231


>gi|56551301|ref|YP_162140.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760955|ref|ZP_04759044.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|56542875|gb|AAV89029.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241374574|gb|EER64035.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A + +A A++         A LR+   P  + L  GPTGVGKT ++R+
Sbjct: 459 TDLKRVVFGQDKAIKTLASAIKLSR------AGLREMHKPIGSYLFSGPTGVGKTEVARQ 512

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA L G P  + +++++ E            GYVG +   ++ D ++
Sbjct: 513 LASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIE 559


>gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 220 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 276


>gi|312075254|ref|XP_003140335.1| AAA ATPase [Loa loa]
 gi|307764496|gb|EFO23730.1| AAA ATPase [Loa loa]
          Length = 353

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           + + +RN +++  L ++L     PK +LL GP G GKT +++ +AR A A FI ++V+  
Sbjct: 101 IPLKIRNVYKKFALSSNLFSP--PKGVLLYGPPGCGKTLLAKIIARAANARFINLQVSSL 158

Query: 90  TEIGY 94
            +  Y
Sbjct: 159 CDKWY 163


>gi|260431104|ref|ZP_05785075.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414932|gb|EEX08191.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 638

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|225420297|ref|ZP_03762600.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
 gi|225041114|gb|EEG51360.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 180 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 236


>gi|89892947|ref|YP_516434.1| hypothetical protein DSY0201 [Desulfitobacterium hafniense Y51]
 gi|89332395|dbj|BAE81990.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|320537708|ref|ZP_08037634.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema
           phagedenis F0421]
 gi|320145445|gb|EFW37135.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema
           phagedenis F0421]
          Length = 795

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 4   TFNFSPREIVSELDRYI----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           T   +  E + EL+++I     GQ++A RAVA A++ R R     A  R +  P  N+  
Sbjct: 481 TVTINETERLKELEQHIAAKVFGQEEAVRAVAQAVK-RSR-----AGFRAKNKPVANLFF 534

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            GPTGVGKT ++R LA   G    + +++++ E   V R
Sbjct: 535 AGPTGVGKTELARSLAEELGIALHRFDMSEYQEKHTVSR 573


>gi|320095492|ref|ZP_08027162.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977577|gb|EFW09250.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 687

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    + +RDL D A
Sbjct: 209 IPRGVLLYGPPGTGKTLLAKAVAGEAHAPFFSISGSEFMEL-YVGVGASR-VRDLFDRA 265


>gi|256784957|ref|ZP_05523388.1| cell division protein FtsH-like protein [Streptomyces lividans
           TK24]
 gi|289768848|ref|ZP_06528226.1| cell division protein [Streptomyces lividans TK24]
 gi|289699047|gb|EFD66476.1| cell division protein [Streptomyces lividans TK24]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 235 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 294

Query: 110 AINIV 114
           A +I+
Sbjct: 295 APSII 299


>gi|237844975|ref|XP_002371785.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211969449|gb|EEB04645.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221501549|gb|EEE27322.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii VEG]
          Length = 831

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP+G GKT ++R +A  AG PF+      F E+ +VG+   + +R L D A
Sbjct: 337 VPRGVLLEGPSGTGKTLLARAVAGEAGVPFLSFSGGAFVEL-FVGQGASR-VRALFDAA 393


>gi|254454634|ref|ZP_05068071.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 238]
 gi|198269040|gb|EDY93310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 238]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLESALKRVVFGQDDAIVALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|172036868|ref|YP_001803369.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698322|gb|ACB51303.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 636

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 221 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 277


>gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 807

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ ILLVGP G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 373 PRGILLVGPPGTGKTLLAKAVAGEADVPFISCSASEFVEL-YVGMGASR-VRDL 424


>gi|308812909|ref|XP_003083761.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116055643|emb|CAL57728.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 211 LPKGLLLVGPPGTGKTMLAKAVAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFKAA 267


>gi|113954954|ref|YP_730623.1| metalloprotease ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
 gi|113882305|gb|ABI47263.1| metalloprotease, ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 219 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 271


>gi|219666214|ref|YP_002456649.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219536474|gb|ACL18213.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|313220370|emb|CBY31225.1| unnamed protein product [Oikopleura dioica]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ ILL GP G GKT I++ +A  AG PF+    ++F E+ YVG   ++ IR L + A 
Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKR-IRKLFEQAR 256

Query: 112 N 112
           N
Sbjct: 257 N 257


>gi|259417972|ref|ZP_05741891.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
 gi|259346878|gb|EEW58692.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|238922947|ref|YP_002936460.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874619|gb|ACR74326.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 609

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 245


>gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 626

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I+R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 186 IPKGVLLVGPPGSGKTHIARAVAGEAKVPFIAASGSDFVEM-FVGVGAAR-VRDLFETA 242


>gi|284989213|ref|YP_003407767.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM
           43160]
 gi|284062458|gb|ADB73396.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM
           43160]
          Length = 662

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 254


>gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 703

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLA 77
           + GQ++AK +    L+        PA   +    +PK +LLVGP G GKT I++ +A  A
Sbjct: 173 VAGQEEAKES----LKEVIDFLNCPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228

Query: 78  GAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
             PF  +  + F E  +G     V ++ +D V  A  IV
Sbjct: 229 KVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAKAPCIV 267


>gi|163745694|ref|ZP_02153054.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161382512|gb|EDQ06921.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIKLSR------AGLREPDKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|145341034|ref|XP_001415621.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144575844|gb|ABO93913.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 632

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 198 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 250


>gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 269


>gi|16330069|ref|NP_440797.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492512|sp|P73437|FTSH4_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|1652556|dbj|BAA17477.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 262


>gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
 gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 636

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 221 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 277


>gi|126656220|ref|ZP_01727604.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126622500|gb|EAZ93206.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
 gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
          Length = 599

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 185 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASR-VRDL 237


>gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|149919978|ref|ZP_01908453.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1]
 gi|149819251|gb|EDM78685.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1]
          Length = 767

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            L  GPTGVGKT ++R+LARL G PF++ +++++ E   V R
Sbjct: 485 FLFTGPTGVGKTELARQLARLLGMPFLRFDMSEYMEKHSVSR 526


>gi|86139142|ref|ZP_01057712.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193]
 gi|85823986|gb|EAQ44191.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|254441752|ref|ZP_05055245.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
 gi|198251830|gb|EDY76145.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231


>gi|168334113|ref|ZP_02692326.1| ATP-dependent Zn protease [Epulopiscium sp. 'N.t. morphotype B']
          Length = 670

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  ++ A +     P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 185 LKNSAKYTEVGAKI-----PRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|154149469|ref|YP_001406077.1| putative cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
 gi|153805478|gb|ABS52485.1| putative Cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ 
Sbjct: 196 LKNPGRYINLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVNGSSFIEM- 249

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 250 FVGVGASR-VRDLFETA 265


>gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|307256620|ref|ZP_07538400.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864868|gb|EFM96771.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233


>gi|297564862|ref|YP_003683834.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           silvanus DSM 9946]
 gi|296849311|gb|ADH62326.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           silvanus DSM 9946]
          Length = 734

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL   I GQ +A + VA A++         A LRD   P    L  GPTGVGKT ++R+
Sbjct: 442 AELSAEIYGQPNAVKEVASAIKLAR------AGLRDPHKPIGAYLFAGPTGVGKTELARQ 495

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA   G P ++ +++++ E   V R
Sbjct: 496 LALKLGVPLLRFDMSEYMEKHTVSR 520


>gi|297588661|ref|ZP_06947304.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516]
 gi|297574034|gb|EFH92755.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|83816311|ref|YP_445161.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|83757705|gb|ABC45818.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
          Length = 686

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 LPTGVLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEM-FVGVGASR-VRDLFDQA 305


>gi|84501333|ref|ZP_00999538.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
 gi|84390624|gb|EAQ03112.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
          Length = 872

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQQ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 565 LHRRVIGQQTAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVAR 644


>gi|322514379|ref|ZP_08067427.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC
           25976]
 gi|322119730|gb|EFX91774.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC
           25976]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|148264775|ref|YP_001231481.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398275|gb|ABQ26908.1| membrane protease FtsH catalytic subunit [Geobacter uraniireducens
           Rf4]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244


>gi|154174002|ref|YP_001407724.1| cell division protein FtsH [Campylobacter curvus 525.92]
 gi|112803610|gb|EAU00954.1| cell division protein FtsH [Campylobacter curvus 525.92]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 208 IPKGILLVGPPGTGKTLLARAVAGEADVPFFSMSASSFIEM-FVGVGASR-VRDLFENA 264


>gi|108801733|ref|YP_641930.1| Mername-AA223 peptidase [Mycobacterium sp. MCS]
 gi|119870884|ref|YP_940836.1| Mername-AA223 peptidase [Mycobacterium sp. KMS]
 gi|108772152|gb|ABG10874.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. MCS]
 gi|119696973|gb|ABL94046.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. KMS]
          Length = 783

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGASR-VRDLFEQA 251


>gi|87198092|ref|YP_495349.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133773|gb|ABD24515.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM
           12444]
          Length = 792

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ  A   ++ A++         A LRD   P  + L  GPTGVGKT ++R L
Sbjct: 467 DLKRLVFGQDKAIEVLSSAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARSL 520

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A++ G P  + +++++ E            GYVG +   ++ D +D   + V
Sbjct: 521 AQIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHCV 572


>gi|159903386|ref|YP_001550730.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888562|gb|ABX08776.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
 gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
          Length = 793

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 185 LQNPTRYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 239 FVGVGASR-VRDLFEQA 254


>gi|254475383|ref|ZP_05088769.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
 gi|214029626|gb|EEB70461.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|83950084|ref|ZP_00958817.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM]
 gi|83837983|gb|EAP77279.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  +  +L   +     PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 173 LRNPQKFSRLGGQI-----PKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA2]
 gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL044PA1]
 gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA3]
 gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08]
          Length = 719

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|307251349|ref|ZP_07533265.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856590|gb|EFM88730.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233


>gi|307247569|ref|ZP_07529613.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252149|ref|ZP_07534048.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307261053|ref|ZP_07542734.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263234|ref|ZP_07544854.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855934|gb|EFM88093.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306860449|gb|EFM92463.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306869250|gb|EFN01046.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871451|gb|EFN03175.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233


>gi|294507044|ref|YP_003571102.1| Cell division protein FtsH [Salinibacter ruber M8]
 gi|310943088|sp|D5H7Z5|FTSH1_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|294343372|emb|CBH24150.1| Cell division protein FtsH [Salinibacter ruber M8]
          Length = 686

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 LPTGVLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEM-FVGVGASR-VRDLFDQA 305


>gi|284054936|ref|ZP_06385146.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str.
           Paraca]
          Length = 121

 Score = 46.6 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 6   IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 62


>gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238]
 gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|187734574|ref|YP_001876686.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187424626|gb|ACD03905.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 860

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 21/99 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  A+A ALR R R     AD++D   P  + L +GPTGVGKT ++R L
Sbjct: 534 ELKSKVIGQDEAASAIARALR-RSR-----ADIKDPRRPIGSFLFLGPTGVGKTYLARNL 587

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98
           A +        I+V+++++ E            GYVG +
Sbjct: 588 AEIMFGTSDALIQVDMSEYMEKHTTSRLIGSPPGYVGHD 626


>gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|118475540|ref|YP_892032.1| atpase ec atp-dependent Zn protease [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414766|gb|ABK83186.1| atpase ec atp-dependent zn protease [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT I++ +A  A  PF       F +I YVG   +++
Sbjct: 188 MPKGVLMVGPPGVGKTLIAKAVAGEANVPFFYQSGASFVQI-YVGMGAKRV 237


>gi|17541224|ref|NP_501860.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|21903441|sp|P54815|MSP1_CAEEL RecName: Full=Mitochondrial sorting homolog
 gi|14530490|emb|CAA93516.2| C. elegans protein K04D7.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 342

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ ILL GP G GKT +++ +AR AG  FI ++V+  T+  Y
Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWY 158


>gi|325961735|ref|YP_004239641.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467822|gb|ADX71507.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1002

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 274 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFNKA 330


>gi|260576490|ref|ZP_05844480.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sp. SW2]
 gi|259021373|gb|EEW24679.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sp. SW2]
          Length = 772

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 RDLEKSLKRVVFGQDKAIEALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 513 VAKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569


>gi|255659247|ref|ZP_05404656.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848701|gb|EEX68708.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 662

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|225574008|ref|ZP_03782653.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038738|gb|EEG48984.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 42  QLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
             P   RD    MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG   
Sbjct: 189 HYPEKYRDIGASMPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGA 247

Query: 100 EQIIRDLVDVA 110
            + +RDL   A
Sbjct: 248 AK-VRDLFKQA 257


>gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 616

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDLFSNA 262


>gi|163814649|ref|ZP_02206038.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
 gi|158450284|gb|EDP27279.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
          Length = 641

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 215 IPKGVLLVGPPGTGKTLMAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 267


>gi|118490708|ref|XP_001238663.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
 gi|109238446|emb|CAK51410.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
          Length = 296

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 11/106 (10%)

Query: 8   SPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           SP +I    D  + G ++ K   R +   L+N  + Q + A L     PK ILL GP G 
Sbjct: 54  SPEDIKDSFDS-VKGYEEVKKEVREIIEYLKNPEKFQAIGAKL-----PKGILLHGPPGT 107

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT ++R +A  AG PF+    + F E+ +VG    + IR L   A
Sbjct: 108 GKTLLARAIAGEAGVPFLHASGSDFEEM-FVGVGASR-IRSLFAAA 151


>gi|303251538|ref|ZP_07337712.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649536|gb|EFL79718.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
 gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
          Length = 607

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 44  PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           P   RD    MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    +
Sbjct: 186 PGRYRDIGAKMPKGILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK 244

Query: 102 IIRDLVDVA 110
            +RDL   A
Sbjct: 245 -VRDLFKQA 252


>gi|260429534|ref|ZP_05783511.1| cell division protease FtsH [Citreicella sp. SE45]
 gi|260420157|gb|EEX13410.1| cell division protease FtsH [Citreicella sp. SE45]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|221480843|gb|EEE19267.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii GT1]
          Length = 829

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP+G GKT ++R +A  AG PF+      F E+ +VG+   + +R L D A
Sbjct: 335 VPRGVLLEGPSGTGKTLLARAVAGEAGVPFLSFSGGAFVEL-FVGQGASR-VRALFDAA 391


>gi|210630009|ref|ZP_03296210.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
 gi|210160721|gb|EEA91692.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 245 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEM-FVGVGASR-VRDLFKSA 301


>gi|163745829|ref|ZP_02153188.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
 gi|161380574|gb|EDQ04984.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
          Length = 625

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 173 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 229


>gi|78779135|ref|YP_397247.1| FtsH peptidase [Prochlorococcus marinus str. MIT 9312]
 gi|78712634|gb|ABB49811.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|21223942|ref|NP_629721.1| cell division protein FtsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|3191980|emb|CAA19379.1| cell division protein FtsH homolog [Streptomyces coelicolor A3(2)]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 235 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 294

Query: 110 AINIV 114
           A +I+
Sbjct: 295 APSII 299


>gi|307245456|ref|ZP_07527544.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254410|ref|ZP_07536248.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258869|ref|ZP_07540601.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853797|gb|EFM86014.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862709|gb|EFM94665.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867220|gb|EFM99076.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233


>gi|295110697|emb|CBL24650.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 701

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 KNVAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 240 GEANVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273


>gi|241762203|ref|ZP_04760285.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753787|ref|YP_003226680.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856522|ref|YP_163394.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|310946773|sp|C8WEG0|FTSH_ZYMMN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|241373250|gb|EER62869.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553150|gb|ACV76096.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775527|gb|AAV90283.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 662

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 211 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 267


>gi|149202856|ref|ZP_01879827.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035]
 gi|149143402|gb|EDM31438.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035]
          Length = 627

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231


>gi|72388112|ref|XP_844480.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           brucei TREU927]
 gi|62359370|gb|AAX79808.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma brucei]
 gi|70801013|gb|AAZ10921.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261327653|emb|CBH10630.1| metallo-peptidase, Clan MA(E) Family M41 [Trypanosoma brucei
           gambiense DAL972]
          Length = 719

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A L     PK +LL GP GVGKT +++ +A  A  PF+    ++F E+ 
Sbjct: 288 LKNPSRYQALGAKL-----PKGVLLDGPPGVGKTLLAKAIAGEAMVPFLSCSGSEFEEV- 341

Query: 94  YVG 96
           YVG
Sbjct: 342 YVG 344


>gi|17541226|ref|NP_501861.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|14530491|emb|CAC42312.1| C. elegans protein K04D7.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 339

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ ILL GP G GKT +++ +AR AG  FI ++V+  T+  Y
Sbjct: 114 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWY 155


>gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium]
 gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium]
          Length = 614

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A APF  +  ++F E+ +VG    + +RDL   A
Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 259


>gi|116668719|ref|YP_829652.1| Mername-AA223 peptidase [Arthrobacter sp. FB24]
 gi|116608828|gb|ABK01552.1| membrane protease FtsH catalytic subunit [Arthrobacter sp. FB24]
          Length = 689

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1]
          Length = 711

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|302390907|ref|YP_003826727.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum
           DSM 5501]
 gi|302202984|gb|ADL11662.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum
           DSM 5501]
          Length = 651

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 188 IPKGVLLVGPPGTGKTLMARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFE 242


>gi|295102061|emb|CBK99606.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 766

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           +EL + IIGQ +A   VA A++ R R     ADL     P + + VGPTGVGKT + ++L
Sbjct: 472 AELKKKIIGQDEAVHLVAQAVK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 525

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A        P I+++++++ E   V R +
Sbjct: 526 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 554


>gi|258593181|emb|CBE69514.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 642

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++  + Q L A +     P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ 
Sbjct: 181 LKHPQKYQALHAKI-----PRGLLLVGPPGCGKTLLAKAVAGEAGVPFFSLSGSEFVEV- 234

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 235 FVGVGASR-VRDLFEQA 250


>gi|296081650|emb|CBI20655.3| unnamed protein product [Vitis vinifera]
          Length = 1053

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +RDL   A
Sbjct: 253 LPKGVLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 309


>gi|258513583|ref|YP_003189805.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777288|gb|ACV61182.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 608

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|254509562|ref|ZP_05121629.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221533273|gb|EEE36261.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|83588978|ref|YP_428987.1| FtsH-2 peptidase [Moorella thermoacetica ATCC 39073]
 gi|83571892|gb|ABC18444.1| membrane protease FtsH catalytic subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|253700219|ref|YP_003021408.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251775069|gb|ACT17650.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 612

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244


>gi|190149910|ref|YP_001968435.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252226|ref|ZP_07338394.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|189915041|gb|ACE61293.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649009|gb|EFL79197.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|168066693|ref|XP_001785268.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663138|gb|EDQ49920.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 693

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK  LLVGP G GKT +++  A  AG PF+ +  + F E+ 
Sbjct: 211 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 264

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 265 FVGVGPSR-VRDL 276


>gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L +  +  ++ A L     PK  LLVGP G GKT ++R +A  
Sbjct: 167 VAGQDEAKEALTEIVDFLHHPKKYSEIGATL-----PKGALLVGPPGTGKTLLARAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 253


>gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
 gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|308799531|ref|XP_003074546.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
 gi|116000717|emb|CAL50397.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 204 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260


>gi|222056505|ref|YP_002538867.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221565794|gb|ACM21766.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 614

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244


>gi|89068036|ref|ZP_01155453.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
 gi|89046275|gb|EAR52332.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
 gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
          Length = 641

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267


>gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
 gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
          Length = 619

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MPK ILLVGP G GKT +++ +A  +  PF  +  ++F E  +G     V  + +D  + 
Sbjct: 202 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEK 261

Query: 110 AINIV 114
           A  IV
Sbjct: 262 APCIV 266


>gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
 gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 208 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 264


>gi|85543015|gb|ABC71388.1| putative FtsH protease [Triticum monococcum]
          Length = 531

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +RDL   A
Sbjct: 34  LPKGVLLVGPPGTGKTMLARAIAGEASVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 90


>gi|99082201|ref|YP_614355.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
 gi|99038481|gb|ABF65093.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|46143708|ref|ZP_00134553.2| COG0465: ATP-dependent Zn proteases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208077|ref|YP_001053302.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096869|gb|ABN73697.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 242


>gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL001PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I ++     +     L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209


>gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
 gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
          Length = 644

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|328767147|gb|EGF77198.1| hypothetical protein BATDEDRAFT_91915 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ LA+ +GA FI + V+  TE  + G + ++++  L  +A
Sbjct: 143 PKGVLLYGPPGCGKTMLAKALAKESGACFINLHVSTLTE-KWFGES-QKLVNALFSIA 198


>gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA1]
 gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA2]
 gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA1]
 gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA3]
 gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA2]
 gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA2]
 gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA2]
 gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA3]
 gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA3]
 gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA1]
 gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3]
 gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA2]
 gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL020PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137]
 gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|197119016|ref|YP_002139443.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088376|gb|ACH39647.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
          Length = 612

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244


>gi|126728390|ref|ZP_01744206.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37]
 gi|126711355|gb|EBA10405.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis]
          Length = 601

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|56697937|ref|YP_168308.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3]
 gi|56679674|gb|AAV96340.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|87124413|ref|ZP_01080262.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
 gi|86167985|gb|EAQ69243.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA4]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA1]
 gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA2]
 gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL092PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
 gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
          Length = 601

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|165976010|ref|YP_001651603.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876111|gb|ABY69159.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 242


>gi|91200867|emb|CAJ73922.1| strongly similar to cell division protein FtsH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R  A  AG PF  +  ++F E+ +VG    + +RD+   A
Sbjct: 228 VPKGVLLIGPPGTGKTLLARATAGEAGVPFYSISASEFIEM-FVGVGAAR-VRDMFKKA 284


>gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740]
 gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 218 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFETA 274


>gi|119025427|ref|YP_909272.1| hypothetical protein BAD_0409 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765011|dbj|BAF39190.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 699

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 255 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 311


>gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL060PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA3]
 gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA4]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|47227684|emb|CAG09681.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  AR +G  FI ++ +  T++ Y
Sbjct: 130 PKGVLLFGPPGCGKTMIAKATARASGCKFINLQASTLTDMWY 171


>gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
 gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
          Length = 620

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASR-VRDL 242


>gi|326530356|dbj|BAJ97604.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LLVG  G GKT ++R +A  AG PF     + F E+ YVG    + +R+L   A N
Sbjct: 22  PKGVLLVGQPGTGKTMLARSMAGEAGVPFFSCSGSDFEEM-YVGVGARR-VRELFSAARN 79


>gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
          Length = 608

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 611

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  LLVGP G GKT ++R +A  +  PF  +  ++F E+ +VGR   + +R+L D A
Sbjct: 197 PKGALLVGPPGTGKTLLARAVAGESHVPFFSIAGSEFVEM-FVGRGAAK-VRELFDEA 252


>gi|154486836|ref|ZP_02028243.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
 gi|154084699|gb|EDN83744.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
          Length = 699

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 255 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 311


>gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA2]
 gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA1]
 gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA2]
 gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL007PA1]
 gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL056PA1]
 gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL086PA1]
 gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA1]
 gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA1]
 gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL045PA1]
 gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA1]
 gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL078PA1]
 gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL038PA1]
 gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA1]
 gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA2]
 gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2]
 gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA1]
 gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA2]
 gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|78779330|ref|YP_397442.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712829|gb|ABB50006.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
          Length = 584

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG
Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVG 209


>gi|22299375|ref|NP_682622.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22295558|dbj|BAC09384.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 644

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 204 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 256


>gi|134298005|ref|YP_001111501.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum reducens MI-1]
 gi|134050705|gb|ABO48676.1| membrane protease FtsH catalytic subunit [Desulfotomaculum reducens
           MI-1]
          Length = 615

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 253


>gi|84687701|ref|ZP_01015574.1| ATP-dependent metalloprotease FtsH [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664284|gb|EAQ10775.1| ATP-dependent metalloprotease FtsH [Rhodobacterales bacterium
           HTCC2654]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 175 IPKGALLVGPPGTGKTLLARSVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231


>gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL074PA1]
 gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA1]
 gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA1]
 gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA1]
 gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA1]
 gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA3]
 gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL067PA1]
 gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA1]
 gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA2]
 gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA3]
 gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA2]
 gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA1]
 gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|322420024|ref|YP_004199247.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320126411|gb|ADW13971.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 612

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244


>gi|156185988|gb|ABU55312.1| ATP-dependent protease ATP-binding subunit [Callosobruchus
          chinensis]
          Length = 26

 Score = 46.6 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 33 ALRNRWRRQQLPADLRDELMPKNILL 58
          ALRNRWRR Q+P  LRDE++PKNIL+
Sbjct: 1  ALRNRWRRNQVPFPLRDEIIPKNILM 26


>gi|126733589|ref|ZP_01749336.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
 gi|126716455|gb|EBA13319.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
          Length = 633

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 179 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 235


>gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
           MJ1494
 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I ++     +     L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209


>gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|242095232|ref|XP_002438106.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
 gi|241916329|gb|EER89473.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 257 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFSKA 313


>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I ++     +     L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209


>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
           Methanococcus jannaschii
          Length = 373

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I ++     +     L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 128 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 183 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 211


>gi|84495018|ref|ZP_00994137.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
 gi|84384511|gb|EAQ00391.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
          Length = 707

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|320101637|ref|YP_004177228.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
 gi|319748919|gb|ADV60679.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F ++ +VG    + +RD+   A
Sbjct: 254 IPKGVLLVGPPGSGKTLLARAVAGEAGVPFFSISGSEFIQM-FVGVGASR-VRDMFKTA 310


>gi|317488913|ref|ZP_07947443.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
 gi|316911987|gb|EFV33566.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
          Length = 725

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q + A +     P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 211 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 264

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 265 FVGVGASR-VRDLFQQA 280


>gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA2]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|300121999|emb|CBK22573.2| unnamed protein product [Blastocystis hominis]
          Length = 652

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT ++R +A  AG PF  V  ++F +I +VG    + +R+L +VA
Sbjct: 137 PHGVLLTGPPGTGKTLMARAVAGEAGVPFFFVSASEFEDI-FVGMGARR-VRELFNVA 192


>gi|116070597|ref|ZP_01467866.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116066002|gb|EAU71759.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 599

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 237


>gi|33861300|ref|NP_892861.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633877|emb|CAE19202.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAGSEFVEM-FVGVGASR-VRDLFKKA 269


>gi|256826672|ref|YP_003150631.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582815|gb|ACU93949.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 759

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 226 IPRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 278


>gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
 gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
          Length = 692

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 244 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 300


>gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
 gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
          Length = 555

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT I++ LA  A  PF       F +I YVG   +++
Sbjct: 189 LPKGVLLVGPPGVGKTLIAKALAGEAKVPFYYQSGASFVQI-YVGMGAKRV 238


>gi|212716401|ref|ZP_03324529.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350934|ref|ZP_03741957.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660654|gb|EEB21229.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158390|gb|EEG71632.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 700

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 256 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 312


>gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 620

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASR-VRDL 242


>gi|123966074|ref|YP_001011155.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200440|gb|ABM72048.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAGSEFVEM-FVGVGASR-VRDL 265


>gi|85706707|ref|ZP_01037799.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217]
 gi|85668765|gb|EAQ23634.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231


>gi|1483215|emb|CAA68141.1| chloroplast FtsH protease [Arabidopsis thaliana]
          Length = 709

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF      +F E+ +VG    + +RDL + A
Sbjct: 294 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSSRPQEFVEL-FVGVGASR-VRDLFEKA 350


>gi|78184725|ref|YP_377160.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169019|gb|ABB26116.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 599

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIACEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 237


>gi|87303473|ref|ZP_01086256.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87281886|gb|EAQ73849.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 603

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 166 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 218


>gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|295106550|emb|CBL04093.1| membrane protease FtsH catalytic subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 781

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q + A +     P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 239 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 292

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 293 FVGVGASR-VRDLFQQA 308


>gi|220917560|ref|YP_002492864.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955414|gb|ACL65798.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|119383442|ref|YP_914498.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans
           PD1222]
 gi|119373209|gb|ABL68802.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans
           PD1222]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|77464236|ref|YP_353740.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|126463078|ref|YP_001044192.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559125|ref|ZP_08413447.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N]
 gi|77388654|gb|ABA79839.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|126104742|gb|ABN77420.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332276837|gb|EGJ22152.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N]
          Length = 633

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|313228702|emb|CBY17853.1| unnamed protein product [Oikopleura dioica]
          Length = 515

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK A+  A+    +R  L   +R    PK +LL GP G GKT I + +A  AGA
Sbjct: 248 IAGLKTAKEAINYAVIAPMKRPDLFTGIRS--APKGVLLFGPPGTGKTLIGKCIASQAGA 305

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   ++G   E++++ L  +A
Sbjct: 306 TFFSISASSMTS-KWIGEG-EKLVKVLFTLA 334


>gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 656

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 42  QLPADLR--DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           Q PA  +     +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG   
Sbjct: 184 QAPAKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGA 242

Query: 100 EQIIRDLVDVA 110
            + +RDL + A
Sbjct: 243 SR-VRDLFEQA 252


>gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab]
 gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-3-3Ab]
          Length = 628

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 255


>gi|89053470|ref|YP_508921.1| FtsH peptidase [Jannaschia sp. CCS1]
 gi|88863019|gb|ABD53896.1| membrane protease FtsH catalytic subunit [Jannaschia sp. CCS1]
          Length = 641

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|146276618|ref|YP_001166777.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554859|gb|ABP69472.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 633

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|310816573|ref|YP_003964537.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25]
 gi|308755308|gb|ADO43237.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|257792624|ref|YP_003183230.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
 gi|257476521|gb|ACV56841.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
          Length = 750

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q + A +     P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 236 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 289

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 290 FVGVGASR-VRDLFQQA 305


>gi|149915624|ref|ZP_01904150.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
 gi|149810516|gb|EDM70359.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
          Length = 641

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
 gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
          Length = 682

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|154505068|ref|ZP_02041806.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
 gi|153794547|gb|EDN76967.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 208 MPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGAAK-VRDLFQQA 264


>gi|86157920|ref|YP_464705.1| FtsH peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122777|ref|YP_002134728.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|85774431|gb|ABC81268.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172626|gb|ACG73599.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|87124626|ref|ZP_01080474.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167505|gb|EAQ68764.1| cell division protein [Synechococcus sp. RS9917]
          Length = 587

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 163 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 215


>gi|326434668|gb|EGD80238.1| mosaic virus helicase domain binding protein [Salpingoeca sp. ATCC
           50818]
          Length = 650

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G ++AKRA+   +     R  L   LR   MPK +LL GP G GKT I + +A  + A
Sbjct: 377 IAGLEEAKRAIQEMVVWPMMRPDLFKGLR--AMPKGVLLFGPPGTGKTLIGKCIASQSKA 434

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  V  +  T   ++G   E+++R L  VA
Sbjct: 435 TFFSVSASSLTS-KWIGEG-EKLVRALFAVA 463


>gi|167520684|ref|XP_001744681.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777012|gb|EDQ90630.1| predicted protein [Monosiga brevicollis MX1]
          Length = 447

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  AG PF     ++F E+ +VG    + +R+L  VA
Sbjct: 40  LPKGVLLMGPPGTGKTLLARAVAGEAGVPFFYCSGSEFDEM-FVGVGARR-VRELFAVA 96


>gi|148547674|ref|YP_001267776.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|310946757|sp|A5W382|FTSH_PSEP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|148511732|gb|ABQ78592.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
          Length = 615

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 190 VPKGTLLVGPPGTGKTLVAKAIAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFDQA 246


>gi|325832734|ref|ZP_08165497.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
 gi|325485873|gb|EGC88334.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
          Length = 750

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q + A +     P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 236 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 289

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 290 FVGVGASR-VRDLFQQA 305


>gi|300742493|ref|ZP_07072514.1| putative cell division protein [Rothia dentocariosa M567]
 gi|300381678|gb|EFJ78240.1| putative cell division protein [Rothia dentocariosa M567]
          Length = 722

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AGAPF  +  + F E+ +VG    + +RDL
Sbjct: 178 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASR-VRDL 230


>gi|239980352|ref|ZP_04702876.1| cell division protein ftsH-like protein [Streptomyces albus J1074]
 gi|291452215|ref|ZP_06591605.1| cell division protein FtsH [Streptomyces albus J1074]
 gi|291355164|gb|EFE82066.1| cell division protein FtsH [Streptomyces albus J1074]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|28572335|ref|NP_789115.1| FtsH-like cell division protein [Tropheryma whipplei TW08/27]
 gi|28410466|emb|CAD66852.1| FtsH-like putative cell division protein [Tropheryma whipplei
           TW08/27]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|220930906|ref|YP_002507814.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
 gi|310943131|sp|B8D065|FTSH_HALOH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219992216|gb|ACL68819.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 195 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFE 249


>gi|221640120|ref|YP_002526382.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           KD131]
 gi|221160901|gb|ACM01881.1| Membrane protease FtsH catalytic subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 623

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 176 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 232


>gi|171741153|ref|ZP_02916960.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283455478|ref|YP_003360042.1| cell division protein [Bifidobacterium dentium Bd1]
 gi|306823451|ref|ZP_07456826.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|309802710|ref|ZP_07696814.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276767|gb|EDT44428.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283102112|gb|ADB09218.1| ftsH Cell division protein [Bifidobacterium dentium Bd1]
 gi|304553158|gb|EFM41070.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|308220774|gb|EFO77082.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 688

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 244 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 300


>gi|119222409|gb|ABL62402.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222411|gb|ABL62403.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222413|gb|ABL62404.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222415|gb|ABL62405.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222417|gb|ABL62406.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222419|gb|ABL62407.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 188

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 1   GSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 57



 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 58  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 117

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 118 DTTNILFICGGAF 130


>gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
 gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPKGALLIGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|28493555|ref|NP_787716.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
 gi|81437733|sp|Q83FV7|FTSH_TROWT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28476597|gb|AAO44685.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|42524085|ref|NP_969465.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus
           HD100]
 gi|81616746|sp|Q6MJV1|FTSH2_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|39576293|emb|CAE80458.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus
           HD100]
          Length = 615

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK ILLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 187 MPKGILLVGPPGTGKTLLAKAVAGEAQVPFYSITGSEFVEM-FVGVGAAR-VRDLFEQA 243


>gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010]
 gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 697

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 304


>gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74]
 gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74]
          Length = 685

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 720

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|260576640|ref|ZP_05844627.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
 gi|259021125|gb|EEW24434.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|225429526|ref|XP_002279005.1| PREDICTED: similar to ftsH-like protease [Vitis vinifera]
          Length = 713

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +RDL   A
Sbjct: 253 LPKGVLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 309


>gi|168014683|ref|XP_001759881.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689011|gb|EDQ75385.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK  LLVGP G GKT +++  A  AG PF+ +  + F E+ 
Sbjct: 188 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 241

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 242 FVGVGPSR-VRDL 253


>gi|148265280|ref|YP_001231986.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398780|gb|ABQ27413.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL
Sbjct: 207 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDL 259


>gi|163841941|ref|YP_001626346.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
 gi|162955417|gb|ABY24932.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
          Length = 704

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254


>gi|148272023|ref|YP_001221584.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147829953|emb|CAN00878.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|84516648|ref|ZP_01004007.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53]
 gi|84509684|gb|EAQ06142.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 179 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 235


>gi|303272437|ref|XP_003055580.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463554|gb|EEH60832.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 570

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P  +LLVG  G GKT ++R +A  AG PFI V  ++F E+ YVG    + +RD+
Sbjct: 139 PSGVLLVGAPGTGKTLLARAVAGEAGVPFISVSASEFVEL-YVGMGAAR-VRDV 190


>gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
          Length = 688

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|168061955|ref|XP_001782950.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665568|gb|EDQ52248.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 872

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK  LLVGP G GKT +++  A  AG PF+ +  + F E+ 
Sbjct: 390 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 443

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 444 FVGVGPSR-VRDLFAQA 459


>gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 228 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 280


>gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           15998]
 gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
 gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
 gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
          Length = 698

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 250 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 306


>gi|197122472|ref|YP_002134423.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196172321|gb|ACG73294.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 237 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 289


>gi|121535064|ref|ZP_01666881.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
 gi|121306314|gb|EAX47239.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
          Length = 651

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|82702921|ref|YP_412487.1| ATP-dependent metalloprotease FtsH [Nitrosospira multiformis ATCC
           25196]
 gi|82410986|gb|ABB75095.1| membrane protease FtsH catalytic subunit [Nitrosospira multiformis
           ATCC 25196]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 200 VPKGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 256


>gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA
           2018]
          Length = 602

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 753

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253


>gi|325120488|emb|CBZ56042.1| ATP-dependent metalloprotease involved in cell division, related
           [Neospora caninum Liverpool]
          Length = 996

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILL GP G GKT ++R +A  AG PFI    ++F E+ +VG
Sbjct: 446 LPKGILLQGPPGTGKTLLARAIAGEAGVPFIHASGSEFEEM-FVG 489


>gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG]
 gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|311112388|ref|YP_003983610.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
 gi|310943882|gb|ADP40176.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
          Length = 765

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AGAPF  +  + F E+ +VG    + +RDL   A
Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASR-VRDLFKEA 268


>gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
 gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
          Length = 685

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|302381982|ref|YP_003817805.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192610|gb|ADL00182.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 646

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|256826248|ref|YP_003150208.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256689641|gb|ACV07443.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 698

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 VPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253


>gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           11379]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|238019160|ref|ZP_04599586.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
 gi|237863859|gb|EEP65149.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
          Length = 815

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ DA  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDDAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|297564905|ref|YP_003683877.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
 gi|296849354|gb|ADH62369.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
          Length = 626

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT I+R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 186 IPKGVLLVGPPGSGKTHIARAVAGEAKVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 242


>gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 697

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 304


>gi|153813325|ref|ZP_01965993.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
 gi|149830615|gb|EDM85706.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 242 ANVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273


>gi|119714708|ref|YP_921673.1| Mername-AA223 peptidase [Nocardioides sp. JS614]
 gi|119535369|gb|ABL79986.1| membrane protease FtsH catalytic subunit [Nocardioides sp. JS614]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|322494944|emb|CBZ30247.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 623

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58
           K  F F     VS   + + G  +AK  V      L++  R Q L A L     PK +LL
Sbjct: 157 KSRFMFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVLL 211

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP GVGKT +++ +A  A  PF+    ++F E+ YVG   ++ +R+L   A N 
Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264


>gi|302544353|ref|ZP_07296695.1| putative cell division protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461971|gb|EFL25064.1| putative cell division protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  +L A +     P+ ILLVGP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 187 LKNPKKYSELGARI-----PRGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 240

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 241 FVGVGASR-VRDL 252


>gi|219870744|ref|YP_002475119.1| cell division protein [Haemophilus parasuis SH0165]
 gi|219690948|gb|ACL32171.1| cell division protein [Haemophilus parasuis SH0165]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +I + L   + G  +AK  VA     LR+  + Q+L   +     PK IL+VGP G 
Sbjct: 145 APDQIKTRLTD-VAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGT 198

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 199 GKTLLAKAIAGEANVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 242


>gi|218132155|ref|ZP_03460959.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992949|gb|EEC58947.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
          Length = 216

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 88  MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 144


>gi|170780555|ref|YP_001708887.1| cell division protein ftsH-like protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155123|emb|CAQ00223.1| cell division protein ftsH homolog [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
 gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
          Length = 653

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 207 IPKGVLLMGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 263


>gi|66954652|dbj|BAD99306.1| FtsH protease [Solanum lycopersicum]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 242 IPKGFLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 298


>gi|331084309|ref|ZP_08333414.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401844|gb|EGG81421.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 626

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 MPKGALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 262


>gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|313114589|ref|ZP_07800097.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623053|gb|EFQ06500.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 769

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            EL + IIGQ +A   VA A++ R R     ADL     P + + VGPTGVGKT + ++L
Sbjct: 474 GELKKKIIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 527

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A        P I+++++++ E   V R +
Sbjct: 528 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 556


>gi|307327053|ref|ZP_07606243.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
 gi|306887351|gb|EFN18347.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
          Length = 680

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
 gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
          Length = 684

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFNQA 250


>gi|315498688|ref|YP_004087492.1| ATP-dependent metalloprotease ftsh [Asticcacaulis excentricus CB
           48]
 gi|315416700|gb|ADU13341.1| ATP-dependent metalloprotease FtsH [Asticcacaulis excentricus CB
           48]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGALLVGPPGTGKTMLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|328954112|ref|YP_004371446.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328454436|gb|AEB10265.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 625

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT + R +A  AG PF+ +  + F E+ +VG    + +RDL
Sbjct: 208 IPKGVLLVGPPGTGKTLLGRAVAGEAGVPFLSLTGSDFVEM-FVGVGAAR-VRDL 260


>gi|324506581|gb|ADY42806.1| Paraplegin [Ascaris suum]
          Length = 788

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92
           L+N  R  +L A L     PK  LL GP G GKT +++ LA  + APFI +  T+F E I
Sbjct: 337 LKNPGRYTKLGAKL-----PKGALLTGPPGCGKTLLAKALAAESSAPFISMNGTEFVEMI 391

Query: 93  GYVG 96
           G +G
Sbjct: 392 GGLG 395


>gi|313681700|ref|YP_004059438.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994]
 gi|313154560|gb|ADR33238.1| ATPase AAA-2 domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 859

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 12/93 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I  EL+R ++GQ+ A  AVA A+ RN+       A L D+  P  + L +GPTGVGKT  
Sbjct: 566 IEDELNRDVVGQERATHAVARAIKRNK-------AGLSDKSRPIGSFLFLGPTGVGKTQT 618

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA+    +    I+++++++ E   V R V
Sbjct: 619 AKTLAKFLFDSSESMIRIDMSEYMEKHAVSRLV 651


>gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
 gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
          Length = 687

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 276


>gi|296110154|ref|YP_003620535.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154]
 gi|295831685|gb|ADG39566.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N  PR     L   +IGQ  A   VA+ L NR       A L D   P++ L +GPTGV
Sbjct: 289 LNLLPR-----LKSQVIGQDTALEKVAMKLTNR------EAGLADTSKPESFLFMGPTGV 337

Query: 65  GKTAISRRLA-RLAGAP--FIKVEVTKFTEIG 93
           GKT  +++LA  L G    FI+ ++++F   G
Sbjct: 338 GKTETAKQLALNLFGNAQNFIRFDMSEFKFAG 369


>gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
          Length = 676

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
 gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
          Length = 670

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFNQA 255


>gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304


>gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC
           33331]
          Length = 682

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|220917260|ref|YP_002492564.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|310943116|sp|B8J992|FTSH_ANAD2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219955114|gb|ACL65498.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 706

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 238 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 290


>gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 259


>gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C]
 gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|257461436|ref|ZP_05626532.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
 gi|257441159|gb|EEV16306.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ 
Sbjct: 198 LKNPERYISLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM- 251

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 252 FVGVGASR-VRDLFDNA 267


>gi|260589993|ref|ZP_05855906.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260539800|gb|EEX20369.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 211 MPKGALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 267


>gi|160880188|ref|YP_001559156.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|310943128|sp|A9KIG5|FTSH_CLOPH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|160428854|gb|ABX42417.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 577

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK ++L GP G GKT I++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 178 MPKGVMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQM-YVGVGASRI 227


>gi|86158199|ref|YP_464984.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774710|gb|ABC81547.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 702

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 237 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 289


>gi|326429214|gb|EGD74784.1| hypothetical protein PTSG_07017 [Salpingoeca sp. ATCC 50818]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 37  RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R RRQQ  + L  +   + +LL GP G GKTAI+  LA  AG PF  + +      GY+G
Sbjct: 261 RHRRQQPNSRLSLQQPQRWLLLHGPHGTGKTAIAHALANSAGLPFAALNMEGVD--GYLG 318

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN 146
            +   ++  L+  A ++  +   D V    ++   E  L+A+ G  + ++
Sbjct: 319 HSRAHVLEALLTAASDLACKP-TDNVTPGCAVVVLEH-LEAIAGHNSATD 366


>gi|183602057|ref|ZP_02963426.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682966|ref|YP_002469349.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190543|ref|YP_002967937.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195949|ref|YP_002969504.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218942|gb|EDT89584.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620616|gb|ACL28773.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248935|gb|ACS45875.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250503|gb|ACS47442.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178278|gb|ADC85524.1| FtsH [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 698

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 250 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 306


>gi|182420046|ref|ZP_02951280.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237669537|ref|ZP_04529517.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376083|gb|EDT73670.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237654981|gb|EEP52541.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 601

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVGP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 191 IPKGILLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVG 234


>gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A]
 gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
 gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
 gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
          Length = 765

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275


>gi|329888406|ref|ZP_08267004.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
 gi|328846962|gb|EGF96524.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
          Length = 650

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|271966202|ref|YP_003340398.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270509377|gb|ACZ87655.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 641

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +++VGP G GKT I+R +A  A  PF+ V  + F E+ +VG    + +RDL D A
Sbjct: 220 PRGVIMVGPPGTGKTLIARAVAGEAAVPFLSVTGSAFVEM-FVGVGASR-VRDLFDEA 275


>gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1]
 gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1]
          Length = 673

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
 gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
          Length = 659

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 676

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +  
Sbjct: 202 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFETG 258


>gi|297159329|gb|ADI09041.1| cell division protein ftsH-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261


>gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305


>gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
          Length = 661

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|197103226|ref|YP_002128604.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1]
 gi|196480502|gb|ACG80029.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 185 MPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 241


>gi|197106744|ref|YP_002132121.1| cell division protein FtsH [Phenylobacterium zucineum HLK1]
 gi|196480164|gb|ACG79692.1| cell division protein FtsH [Phenylobacterium zucineum HLK1]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT I+R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGALLIGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
 gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304


>gi|315650241|ref|ZP_07903314.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315487486|gb|EFU77795.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK I+LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 200 IPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 254


>gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
 gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
          Length = 737

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ +A R V  A+      Q   A L D+  P  ++L VGPTGVGKT ++R LA+  G
Sbjct: 453 IYGQDEAIRQVVEAV------QMSKAGLLDDNKPLASLLFVGPTGVGKTEVARVLAKELG 506

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              ++ +++++TE            GY+G     ++ D +    N V
Sbjct: 507 IALLRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 553


>gi|313893296|ref|ZP_07826871.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442192|gb|EFR60609.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 815

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ DA  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDDAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L +  +  ++ A+L     PK  LLVGP G GKT +++ +A  
Sbjct: 165 VAGQDEAKEALKEIVDFLHDPGKYAEIGANL-----PKGALLVGPPGTGKTLLAQAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           A  PF  +  ++F E+ +VG    + +RDL   A+
Sbjct: 220 AEVPFFSISGSEFVEM-FVGMGAAK-VRDLFSQAV 252


>gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
 gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
 gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|159043664|ref|YP_001532458.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12]
 gi|157911424|gb|ABV92857.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|313906218|ref|ZP_07839564.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313468948|gb|EFR64304.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 622

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 189 MPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 245


>gi|299144251|ref|ZP_07037331.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518736|gb|EFI42475.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 623

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQDEAKEALTEIVDFLHNPKKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 239 ADVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 270


>gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 256


>gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304


>gi|24217184|ref|NP_714667.1| shikimic acid kinase I [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655682|ref|YP_003491.1| shikimate kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24202230|gb|AAN51682.1| shikimate kinase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602653|gb|AAS72128.1| shikimate kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 179

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           M KN  L+GP GVGK+ ISR+L+++ G P +  ++    EIG  G ++ + I+
Sbjct: 1   MKKNFALIGPRGVGKSKISRKLSKITGMPVVSTDMIAVYEIG--GMSIPEFIQ 51


>gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 680

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|206889700|ref|YP_002248469.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741638|gb|ACI20695.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 603

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 189 IPKGILLVGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 245


>gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680]
 gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis
           MA-4680]
          Length = 664

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans
           TK24]
 gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24]
 gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)]
 gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24]
          Length = 668

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|119387548|ref|YP_918582.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans
           PD1222]
 gi|119378123|gb|ABL72886.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans
           PD1222]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG  F+ +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVEL-FVGVGAAR-VRDLFEQA 244


>gi|307946409|ref|ZP_07661744.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp.
           TrichSKD4]
 gi|307770073|gb|EFO29299.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp.
           TrichSKD4]
          Length = 824

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 18/109 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ DA   +A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 466 LSAELKRVVYGQNDAIDTLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           R+LA   G   I+ +++++ E            GYVG +   ++ D VD
Sbjct: 520 RQLASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 568


>gi|209522887|ref|ZP_03271445.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209496936|gb|EDZ97233.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 651

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 223 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 279


>gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14]
 gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14]
          Length = 668

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 117 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 173


>gi|291518252|emb|CBK73473.1| ATP-dependent metalloprotease FtsH [Butyrivibrio fibrisolvens 16/4]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ++LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 82  IPKGVILVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 134


>gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22]
 gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei
           87.22]
          Length = 660

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
 gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
          Length = 669

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 249


>gi|296131747|ref|YP_003638994.1| ATP-dependent metalloprotease FtsH [Thermincola sp. JR]
 gi|296030325|gb|ADG81093.1| ATP-dependent metalloprotease FtsH [Thermincola potens JR]
          Length = 646

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 751

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253


>gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
 gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
          Length = 695

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ+ AK+ V   + +  +  Q   DL  ++ PK  LLVGP G GKT +++ +A  AG 
Sbjct: 201 VAGQEGAKQEVK-EIVDFLKNPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 258

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PF  +  + F E+ +VG    + +RDL
Sbjct: 259 PFFSMSGSDFVEM-FVGVGASR-VRDL 283


>gi|331003929|ref|ZP_08327418.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411949|gb|EGG91349.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK I+LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 200 IPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 254


>gi|269128700|ref|YP_003302070.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
 gi|268313658|gb|ACZ00033.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
          Length = 476

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 69  MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 125


>gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 647

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF     + F E+ YVG    + IRDL   A
Sbjct: 206 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEV-YVGLGASR-IRDLFKEA 262


>gi|160902338|ref|YP_001567919.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
 gi|310943104|sp|A9BJK3|FTSH3_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|160359982|gb|ABX31596.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
          Length = 645

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 MPKGVLLVGEPGTGKTLLARAVAGEAGVPFFYISGSDFVEL-FVGVGAAR-VRDLFNQA 250


>gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 691

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G+GKT ++R +A  AG  F     ++F E+ +VG   ++ +RDL   A
Sbjct: 255 LPKGVLLVGPPGIGKTLLARAIAGEAGVNFFNTSGSEFEEM-FVGLGAKR-VRDLFAAA 311


>gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
          Length = 669

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
 gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
          Length = 666

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina]
 gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  +G PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGESGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 696

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +  
Sbjct: 222 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFETG 278


>gi|262196734|ref|YP_003267943.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
 gi|310943130|sp|D0LWB8|FTSH_HALO1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262080081|gb|ACY16050.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
          Length = 682

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L++GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 224 IPKGVLMMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 278


>gi|240144490|ref|ZP_04743091.1| negative regulator of genetic competence ClpC/mecB [Roseburia
           intestinalis L1-82]
 gi|257203477|gb|EEV01762.1| negative regulator of genetic competence ClpC/mecB [Roseburia
           intestinalis L1-82]
          Length = 815

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ + L + +IGQ+DA  AVA A+R R R       L+D   P  + L +GPTGVGKT 
Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTE 560

Query: 69  ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           IS+ LA     +    I+V+++++ E            GYVG
Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602


>gi|322381175|ref|ZP_08055178.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154751|gb|EFX47022.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 251


>gi|125974738|ref|YP_001038648.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum ATCC
           27405]
 gi|256005251|ref|ZP_05430218.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281418793|ref|ZP_06249812.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|125714963|gb|ABN53455.1| membrane protease FtsH catalytic subunit [Clostridium thermocellum
           ATCC 27405]
 gi|255990802|gb|EEU00917.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281407877|gb|EFB38136.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|316941872|gb|ADU75906.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           1313]
          Length = 599

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|114797326|ref|YP_758892.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
 gi|114737500|gb|ABI75625.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|167626375|ref|YP_001676875.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596376|gb|ABZ86374.1| Microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 250


>gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a]
 gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease)
           [Frankia alni ACN14a]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3]
 gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3]
          Length = 753

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|332000025|ref|NP_001193643.1| fidgetin-like protein 1 [Bos taurus]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  AGA F  +  +  T   +VG   E+++R L  VA
Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492


>gi|146278243|ref|YP_001168402.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556484|gb|ABP71097.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 783

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 471 RDLEKTLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 524

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 525 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 581


>gi|68478796|ref|XP_716560.1| hypothetical protein CaO19.1252 [Candida albicans SC5314]
 gi|68478899|ref|XP_716504.1| hypothetical protein CaO19.8836 [Candida albicans SC5314]
 gi|46438174|gb|EAK97509.1| hypothetical protein CaO19.8836 [Candida albicans SC5314]
 gi|46438231|gb|EAK97565.1| hypothetical protein CaO19.1252 [Candida albicans SC5314]
          Length = 687

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313


>gi|323487347|ref|ZP_08092647.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323694214|ref|ZP_08108390.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
 gi|323399392|gb|EGA91790.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323501687|gb|EGB17573.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
          Length = 592

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 183 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 239


>gi|313609585|gb|EFR85116.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes FSL F2-208]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 129 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 182

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 183 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 225


>gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 718

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|261885533|ref|ZP_06009572.1| atpase ec atp-dependent Zn protease [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L+VGP GVGKT I++ +A  A  PF       F +I YVG   +++
Sbjct: 188 MPKGVLMVGPPGVGKTLIAKAVAGEANVPFFYQSGASFVQI-YVGMGAKRV 237


>gi|257457970|ref|ZP_05623129.1| cell division protease FtsH homolog [Treponema vincentii ATCC
           35580]
 gi|257444683|gb|EEV19767.1| cell division protease FtsH homolog [Treponema vincentii ATCC
           35580]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  +G PF ++  + F E+ +VG    + +RDL   A
Sbjct: 241 IPRGVLLVGPPGTGKTLLARAVAGESGVPFFRISGSDFVEM-FVGVGASR-VRDLFKQA 297


>gi|254993258|ref|ZP_05275448.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria
           monocytogenes FSL J2-064]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|241668806|ref|ZP_04756384.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 250


>gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
 gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
          Length = 587

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 180 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 236


>gi|170738633|ref|YP_001767288.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46]
 gi|168192907|gb|ACA14854.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|75761782|ref|ZP_00741718.1| Cell division protein ftsH / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490732|gb|EAO54012.1| Cell division protein ftsH  / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 267

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG
Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVG 237


>gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000]
 gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000]
          Length = 668

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|224015872|ref|XP_002297581.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967748|gb|EED86130.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  AG PF     ++F E+ YVG   ++ IR+L + A
Sbjct: 50  LPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEV-YVGLGAKR-IRELFEAA 106


>gi|217964903|ref|YP_002350581.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|217334173|gb|ACK39967.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|307570538|emb|CAR83717.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           monocytogenes L99]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 420 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 473

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|254852492|ref|ZP_05241840.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503]
 gi|300764207|ref|ZP_07074202.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes FSL N1-017]
 gi|258605801|gb|EEW18409.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503]
 gi|300515197|gb|EFK42249.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes FSL N1-017]
 gi|328466890|gb|EGF37999.1| ATP-dependent protease [Listeria monocytogenes 1816]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|154148871|ref|YP_001406629.1| putative cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
 gi|153804880|gb|ABS51887.1| putative Cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
          Length = 561

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +L++GP GVGKT I++ +A  AG PF       F EI +VG   +++
Sbjct: 195 LPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGASFAEI-FVGVGAKRV 244


>gi|220927544|ref|YP_002504453.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
 gi|310943126|sp|B8I4B9|FTSH_CLOCE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219997872|gb|ACL74473.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
          Length = 619

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259


>gi|312898242|ref|ZP_07757633.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
 gi|310620739|gb|EFQ04308.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
          Length = 649

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  +   + A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 160 LRNPAKYNAIGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 213

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 214 FVGVGASR-VRDL 225


>gi|308049698|ref|YP_003913264.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas
           balearica DSM 9799]
 gi|307631888|gb|ADN76190.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas
           balearica DSM 9799]
          Length = 758

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 22/114 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           +E++  LDR     + GQ  A  A+  A+R         + L +E  P  N L  GPTGV
Sbjct: 451 KEVLENLDRNLKMVVFGQDPAIEALTAAIR------LARSGLGNEGKPVGNFLFAGPTGV 504

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           GKT ++++LAR  G   I+ +++++ E            GYVG +   ++ D V
Sbjct: 505 GKTEVTQQLARQLGVELIRFDMSEYMERHSVSRLVGAPPGYVGYDQGGLLTDAV 558


>gi|296535580|ref|ZP_06897761.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
 gi|296264096|gb|EFH10540.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
          Length = 622

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGILLVGPPGTGKTLVARAIAGEAGVSFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|291538077|emb|CBL11188.1| ATPases with chaperone activity, ATP-binding subunit [Roseburia
           intestinalis XB6B4]
          Length = 815

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ + L + +IGQ+DA  AVA A+R R R       L+D   P  + L +GPTGVGKT 
Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTE 560

Query: 69  ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           IS+ LA     +    I+V+++++ E            GYVG
Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602


>gi|291534335|emb|CBL07447.1| ATPases with chaperone activity, ATP-binding subunit [Roseburia
           intestinalis M50/1]
          Length = 815

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ + L + +IGQ+DA  AVA A+R R R       L+D   P  + L +GPTGVGKT 
Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPRRPIGSFLFLGPTGVGKTE 560

Query: 69  ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           IS+ LA     +    I+V+++++ E            GYVG
Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602


>gi|290893448|ref|ZP_06556432.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J2-071]
 gi|290556949|gb|EFD90479.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J2-071]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 420 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 473

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|238881317|gb|EEQ44955.1| hypothetical protein CAWG_03255 [Candida albicans WO-1]
          Length = 687

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313


>gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
          Length = 642

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ 
Sbjct: 199 LKNPERYATLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 252

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 253 FVGVGASR-VRDLFENA 268


>gi|226223615|ref|YP_002757722.1| ATP-dependent protease [Listeria monocytogenes Clip81459]
 gi|225876077|emb|CAS04783.1| ATP-dependent protease [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|220925336|ref|YP_002500638.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS
           2060]
 gi|219949943|gb|ACL60335.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS
           2060]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|154174286|ref|YP_001408236.1| putative cell division protease FtsH-like protein [Campylobacter
           curvus 525.92]
 gi|112802796|gb|EAU00140.1| putative Cell division protease FtsH-like protein [Campylobacter
           curvus 525.92]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +L++GP GVGKT +++ +A  A  PF       F +I YVG   ++ +R+L + A
Sbjct: 185 MPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQI-YVGMGAKR-VRELFNKA 241


>gi|330507066|ref|YP_004383494.1| AAA ATPase family protein [Methanosaeta concilii GP-6]
 gi|328927874|gb|AEB67676.1| AAA ATPase family protein associated with various cellular
           activities [Methanosaeta concilii GP-6]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 24/92 (26%)

Query: 20  IIGQQDAKRAVAIALR--------NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           ++GQ++AKR V I  +         RW              P+NIL  G +G GKT I++
Sbjct: 121 VVGQEEAKRKVKIVEKYLSDPERFGRW-------------APRNILFYGVSGTGKTMIAK 167

Query: 72  RLARLAGAPFIKVEVTKFTEIG-YVGRNVEQI 102
            L+  AG P + V+ T    IG +VG    QI
Sbjct: 168 ALSAKAGVPMLAVKSTSL--IGEFVGEGARQI 197


>gi|254931380|ref|ZP_05264739.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
 gi|293582931|gb|EFF94963.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|254877338|ref|ZP_05250048.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843359|gb|EET21773.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 240


>gi|241954902|ref|XP_002420172.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Candida dubliniensis CD36]
 gi|223643513|emb|CAX42394.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Candida dubliniensis CD36]
          Length = 687

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313


>gi|167856351|ref|ZP_02479079.1| cell division protease FtsH-like protein [Haemophilus parasuis
           29755]
 gi|167852518|gb|EDS23804.1| cell division protease FtsH-like protein [Haemophilus parasuis
           29755]
          Length = 645

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR+  + Q+L   +     PK IL+VGP G GKT +++ +A  
Sbjct: 159 VAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAGE 213

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 214 ANVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 245


>gi|157737374|ref|YP_001490057.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157699228|gb|ABV67388.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 490

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT I+R +A  A  PF       F  I YVG   +++
Sbjct: 145 LPKGVLLVGPPGVGKTLIARAVAGEADVPFFYQSGASFVHI-YVGMGAKKV 194


>gi|46907229|ref|YP_013618.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|254823731|ref|ZP_05228732.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194]
 gi|46880496|gb|AAT03795.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|293592952|gb|EFG00713.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|326202847|ref|ZP_08192714.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
 gi|325986924|gb|EGD47753.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
          Length = 619

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252


>gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
 gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A 
Sbjct: 188 IPRGVLLVGPPGCGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQAK 245

Query: 112 N 112
           N
Sbjct: 246 N 246


>gi|328475348|gb|EGF46121.1| ATP-dependent protease [Listeria monocytogenes 220]
 gi|332311405|gb|EGJ24500.1| ATP-dependent Clp protease [Listeria monocytogenes str. Scott A]
          Length = 722

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|325474420|gb|EGC77607.1| ATP-dependent Clp protease [Treponema denticola F0402]
          Length = 785

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   V  A++ R R     A  R +  P  N L VGPTGVGKT +++ LA
Sbjct: 491 LSKKIFGQDTAIEGVTKAVK-RSR-----AGFRSKDKPVANFLFVGPTGVGKTELAKTLA 544

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P ++ +++++ E   V R
Sbjct: 545 EELGIPLLRFDMSEYQEKHTVSR 567


>gi|303271193|ref|XP_003054958.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462932|gb|EEH60210.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 833

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK +L  GP G GKT +++ +A  AG PF     ++F E  +G   + V  + R   DV
Sbjct: 279 IPKGVLFEGPPGTGKTLLAKAVAGEAGVPFFYANGSEFVEMFVGVAAKRVRDLFRRARDV 338

Query: 110 AINIV 114
           + +I+
Sbjct: 339 SPSII 343


>gi|148906545|gb|ABR16425.1| unknown [Picea sitchensis]
          Length = 1036

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           +P+ ILL GP G GKT ++R +AR  G PF+     +F+E G
Sbjct: 551 LPRGILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESG 592


>gi|42527627|ref|NP_972725.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema
           denticola ATCC 35405]
 gi|41818455|gb|AAS12644.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema
           denticola ATCC 35405]
          Length = 785

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   V  A++ R R     A  R +  P  N L VGPTGVGKT +++ LA
Sbjct: 491 LSKKIFGQDTAIEGVTKAVK-RSR-----AGFRSKDKPVANFLFVGPTGVGKTELAKTLA 544

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P ++ +++++ E   V R
Sbjct: 545 EELGIPLLRFDMSEYQEKHTVSR 567


>gi|258592316|emb|CBE68625.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 603

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  A APF  +  + F E+ +VG    + +RDL +
Sbjct: 185 IPKGVLLMGPPGTGKTLLARAIAGEANAPFFSISGSDFVEM-FVGVGASR-VRDLFE 239


>gi|167465129|ref|ZP_02330218.1| Cell division protein ftsH [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 629

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 147 IPKGVLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 203


>gi|307265667|ref|ZP_07547220.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919311|gb|EFN49532.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  A+   + FI    ++F E+ Y G   ++ +R+L + A N+
Sbjct: 97  KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETAKNL 154

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167
            R+    E +  A I  +E  +D L  K  T+ +   + + L       DG  SD EI+I
Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208

Query: 168 EV 169
            V
Sbjct: 209 LV 210


>gi|281209066|gb|EFA83241.1| 26S protease regulatory subunit 6B [Polysphondylium pallidum PN500]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E  S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 152 PSESYSDIGGSDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 206

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 LAKAVAHHTSASFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 246


>gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 669

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ+ AK+ V   + +  +  Q   DL  ++ PK  LLVGP G GKT +++ +A  AG 
Sbjct: 197 VAGQEGAKQEVQ-EIVDFLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 254

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PF  +  + F E+ +VG    + +RDL   A
Sbjct: 255 PFFSMSGSDFVEM-FVGVGASR-VRDLFHQA 283


>gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253


>gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
 gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
          Length = 642

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ 
Sbjct: 199 LKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 252

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 253 FVGVGASR-VRDLFENA 268


>gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 292


>gi|194758523|ref|XP_001961511.1| GF14896 [Drosophila ananassae]
 gi|190615208|gb|EDV30732.1| GF14896 [Drosophila ananassae]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 24  QDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           Q+ +  V + +R+R  +RR QL         PK +LL GP G GKT I++ +A+ AG  F
Sbjct: 105 QELRETVVLPVRHRELFRRSQLWR------APKGVLLHGPPGCGKTLIAKAIAKDAGMRF 158

Query: 82  IKVEVTKFTEIGY 94
           I ++V   T+  Y
Sbjct: 159 INLDVAVLTDKWY 171


>gi|302836037|ref|XP_002949579.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f.
           nagariensis]
 gi|300264938|gb|EFJ49131.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f.
           nagariensis]
          Length = 559

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LLVGP G GKT +++ +A  AG PF  +  ++F E+ YVG    + +R+L   A
Sbjct: 236 PAGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISASEFVEL-YVGMGAMR-VRELFAAA 291


>gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
 gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 668

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|229816586|ref|ZP_04446885.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
 gi|229807921|gb|EEP43724.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
          Length = 747

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 246 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEM-FVGVGASR-VRDL 298


>gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 620

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 247


>gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 648

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L++GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 197 IPKGVLMMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 251


>gi|326389230|ref|ZP_08210798.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994593|gb|EGD53017.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  A+   + FI    ++F E+ Y G   ++ +R+L + A N+
Sbjct: 97  KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETAKNL 154

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167
            R+    E +  A I  +E  +D L  K  T+ +   + + L       DG  SD EI+I
Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208

Query: 168 EV 169
            V
Sbjct: 209 LV 210


>gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
 gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
          Length = 679

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo]
 gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia
           bovis]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT +++ +A  A  PFI     +F EI +VG+  +++
Sbjct: 247 IPKGVLLVGPPGTGKTMLAKAVATEANIPFIYTSGPEFVEI-FVGQGAQRV 296


>gi|322378643|ref|ZP_08053079.1| cell division protein (ftsH) [Helicobacter suis HS1]
 gi|322379895|ref|ZP_08054181.1| cell division protein (ftsH) [Helicobacter suis HS5]
 gi|321147690|gb|EFX42304.1| cell division protein (ftsH) [Helicobacter suis HS5]
 gi|321148950|gb|EFX43414.1| cell division protein (ftsH) [Helicobacter suis HS1]
          Length = 645

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL ++A
Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEM-FVGLGASR-VRDLFEIA 271


>gi|268316402|ref|YP_003290121.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
 gi|310946760|sp|D0MGU8|FTSH_RHOM4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262333936|gb|ACY47733.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
          Length = 697

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 243 LPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 295


>gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
 gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFQQA 255


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F EI  VG+   + +RDL  VA
Sbjct: 141 LPKGVLLVGPPGTGKTLLARAVAGEARVPFFHAAGPEFDEI-LVGQGARR-VRDLFKVA 197


>gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
 gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|150951427|ref|XP_001387744.2| mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases
           [Scheffersomyces stipitis CBS 6054]
 gi|149388585|gb|EAZ63721.2| mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases
           [Pichia stipitis CBS 6054]
          Length = 703

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 273 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 329


>gi|118581289|ref|YP_902539.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|310946754|sp|A1AT11|FTSH_PELPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118503999|gb|ABL00482.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
          Length = 623

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL
Sbjct: 206 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDL 258


>gi|322712438|gb|EFZ04011.1| ATPase family AAA domain-containing protein 1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N  +I+R +  +A
Sbjct: 161 PSGVLLFGPPGCGKTMLAKALAHESGASFINLHISTMTEKWYGDSN--KIVRAVFSLA 216


>gi|148828042|ref|YP_001292795.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719284|gb|ABR00412.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 856

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R       A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIRRRR------AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|149234483|ref|XP_001523121.1| hypothetical protein LELG_05667 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453230|gb|EDK47486.1| hypothetical protein LELG_05667 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 702

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I
Sbjct: 273 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 322


>gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 600

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLYGPPGTGKTLMARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFENA 245


>gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 630

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254


>gi|255282855|ref|ZP_05347410.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255266629|gb|EET59834.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 641

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK ++      L+N  + + + A       PK  LLVGP G GKT +++ +A
Sbjct: 203 RDVAGQDEAKESLEEMVDYLKNPEKYRAIGAQ-----QPKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 258 GEAGVPFYHLTGSEFVEM-FVGVGASR-VRDLFQTA 291


>gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
 gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249


>gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 667

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 296


>gi|116074892|ref|ZP_01472153.1| cell division protein FtsH4 [Synechococcus sp. RS9916]
 gi|116068114|gb|EAU73867.1| cell division protein FtsH4 [Synechococcus sp. RS9916]
          Length = 606

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 177 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 229


>gi|116618213|ref|YP_818584.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097060|gb|ABJ62211.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N  PR     L   +IGQ  A   VA+ L NR       A L D   P++ L +GPTGV
Sbjct: 289 LNLLPR-----LKSQVIGQDTALEKVAMKLTNR------EAGLADTSKPESFLFMGPTGV 337

Query: 65  GKTAISRRLA-RLAGAP--FIKVEVTKFTEIG 93
           GKT  +++LA  L G    FI+ ++++F   G
Sbjct: 338 GKTETAKQLALNLFGNKQNFIRFDMSEFKFAG 369


>gi|326803021|ref|YP_004320839.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650125|gb|AEA00308.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 716

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 226 IPKGVLLEGPPGTGKTLLAKAVAGEANVPFYSISGSEFVEM-FVGVGASR-VRDLFDTA 282


>gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249


>gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
 gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
          Length = 854

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 186 LQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 239

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 240 FVGVGASR-VRDMFEQA 255


>gi|153812538|ref|ZP_01965206.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
 gi|149831463|gb|EDM86551.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
          Length = 595

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK ++LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 178 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 232


>gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 618

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250


>gi|328885330|emb|CCA58569.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 611

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 201 MPRGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 260

Query: 110 AINIV 114
           A  I+
Sbjct: 261 APAII 265


>gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1]
 gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1]
          Length = 610

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
 gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
          Length = 738

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R ++L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 189 LQNPARYERLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 243 FVGVGASR-VRDLFEKA 258


>gi|290969236|ref|ZP_06560761.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780742|gb|EFD93345.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
          Length = 646

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 187 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 239


>gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249


>gi|322504676|emb|CAM38449.2| putative mitochondrial ATP-dependent zinc metallopeptidase
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 790

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58
           K  F F     VS   + + G  +AK  V      L+   R Q L A L     PK +LL
Sbjct: 324 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKQPERYQALGAKL-----PKGVLL 378

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP GVGKT +++ +A  A  PF+    ++F E+ YVG   ++ +R+L   A N 
Sbjct: 379 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 431


>gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253


>gi|260432833|ref|ZP_05786804.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416661|gb|EEX09920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 774

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 461 KDLEASLKRVVFGQDQAIEALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 515 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 571


>gi|296488727|gb|DAA30840.1| fidgetin-like [Bos taurus]
          Length = 974

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  AGA F  +  +  T   +VG   E+++R L  VA
Sbjct: 734 PKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 789


>gi|309808773|ref|ZP_07702659.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           01V1-a]
 gi|308168009|gb|EFO70141.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           01V1-a]
          Length = 575

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 117 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 173


>gi|301121358|ref|XP_002908406.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
 gi|262103437|gb|EEY61489.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
          Length = 433

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++R  A+   A F+K+   +  ++ ++G    +++RD    A  
Sbjct: 207 PKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQM-FIGDGA-KLVRD----AFE 260

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164
           + +E  +D+ R  A I  +E  LDA+  K      S  REV R  L      DG  S+ +
Sbjct: 261 LAKEKCKDQNRGGAIIFIDE--LDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFTSNTK 318

Query: 165 IDIEVADTSSDI 176
           I +  A    D+
Sbjct: 319 IKVIAATNRPDV 330


>gi|190348776|gb|EDK41301.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I
Sbjct: 252 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 301


>gi|159902789|ref|YP_001550133.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211]
 gi|159887965|gb|ABX08179.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211]
          Length = 602

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 235


>gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
 gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253


>gi|148253363|ref|YP_001237948.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146405536|gb|ABQ34042.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 618

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250


>gi|297172541|gb|ADI23511.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF0770_41L09]
          Length = 827

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + I+GQQDA  AV+ A+R R R     A L+D   P  + +  GPTGVGKT + R L
Sbjct: 519 ELHKRIVGQQDAIEAVSRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELGRAL 572

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A    A     I+V+++++ E   V R
Sbjct: 573 AEFLFADSEALIRVDMSEYMEKFSVSR 599


>gi|226324146|ref|ZP_03799664.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758]
 gi|225207695|gb|EEG90049.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758]
          Length = 578

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 167 IPKGVLLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 223


>gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
          Length = 643

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ 
Sbjct: 200 LKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 253

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 254 FVGVGASR-VRDLFENA 269


>gi|302797795|ref|XP_002980658.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii]
 gi|300151664|gb|EFJ18309.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii]
          Length = 453

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++  A  AG PF+ +  + FTE+ +VG    + +RDL
Sbjct: 20  IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSR-VRDL 72


>gi|302805623|ref|XP_002984562.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii]
 gi|300147544|gb|EFJ14207.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii]
          Length = 453

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++  A  AG PF+ +  + FTE+ +VG    + +RDL
Sbjct: 20  IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSR-VRDL 72


>gi|307111340|gb|EFN59574.1| hypothetical protein CHLNCDRAFT_132927 [Chlorella variabilis]
          Length = 538

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP G GKT ++R +A  AGA FI +  ++F E+ +VG    + +RDL
Sbjct: 90  IPRGVLLCGPPGTGKTLLARAVAGEAGATFIALNASEFVEM-FVGVGASR-VRDL 142


>gi|126724795|ref|ZP_01740638.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150]
 gi|126705959|gb|EBA05049.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150]
          Length = 884

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A R+V+ A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 576 ELGRRVIGQKSAVRSVSNAVR-RAR-----AGLNDEARPLGSFLFLGPTGVGKTELTKAV 629

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 630 AEFLFDDDSAMVRIDMSEFMEKHAVAR 656


>gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus
           DSM 2379]
          Length = 621

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 188 IPKGVLLMGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240


>gi|315653939|ref|ZP_07906855.1| cell division protein FtsH [Lactobacillus iners ATCC 55195]
 gi|315488635|gb|EFU78281.1| cell division protein FtsH [Lactobacillus iners ATCC 55195]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279


>gi|146412816|ref|XP_001482379.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I
Sbjct: 252 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 301


>gi|33239707|ref|NP_874649.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237232|gb|AAP99301.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 599

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 176 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 232


>gi|329889201|ref|ZP_08267544.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           diminuta ATCC 11568]
 gi|328844502|gb|EGF94066.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           diminuta ATCC 11568]
          Length = 767

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 18/113 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+ ++L R + GQ+ A   V+ A++         A LRD   P    L  GPTGVGK
Sbjct: 455 SLRELETDLKRVVFGQEQAIDQVSAAMK------LARAGLRDPNKPIGAFLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           T ++ +LA   G    + +++++ E            GYVG +   ++ D VD
Sbjct: 509 TEVANQLAATLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 561


>gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK +LLVGP G GKT +++ +A  +  PF  +  ++F E+ +VG    + +RDL
Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249


>gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 673

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 298


>gi|194476614|ref|YP_002048793.1| cell division protein [Paulinella chromatophora]
 gi|171191621|gb|ACB42583.1| cell division protein [Paulinella chromatophora]
          Length = 620

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEANVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|167038506|ref|YP_001666084.1| microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167038751|ref|YP_001661736.1| microtubule-severing ATPase [Thermoanaerobacter sp. X514]
 gi|256751376|ref|ZP_05492255.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913664|ref|ZP_07130981.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561]
 gi|307723321|ref|YP_003903072.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513]
 gi|320116902|ref|YP_004187061.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166852991|gb|ABY91400.1| Microtubule-severing ATPase [Thermoanaerobacter sp. X514]
 gi|166857340|gb|ABY95748.1| Microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256749758|gb|EEU62783.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890349|gb|EFK85494.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561]
 gi|307580382|gb|ADN53781.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513]
 gi|319929993|gb|ADV80678.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 490

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  A+   + FI    ++F E+ Y G   ++ +R+L + A N+
Sbjct: 97  KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETARNL 154

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167
            R+  ++     A I  +E  +D L  K  T+ +   + + L       DG  SD EI+I
Sbjct: 155 ARKENKN----SAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208

Query: 168 EV 169
            V
Sbjct: 209 LV 210


>gi|328545133|ref|YP_004305242.1| ATP-dependent metallopeptidase HflB subfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414875|gb|ADZ71938.1| ATP-dependent metallopeptidase HflB subfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 660

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 296


>gi|168334136|ref|ZP_02692345.1| ATP-dependent metalloprotease FtsH [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 577

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK ++  GP G GKT +++ LA+ A  PF  V  + F ++ YVG    + IR+L     
Sbjct: 180 MPKGLIFYGPPGTGKTMMAKALAKEANVPFFSVSGSDFMQM-YVGVGASR-IREL----- 232

Query: 112 NIVRESRRDE 121
              RE+++ E
Sbjct: 233 --FREAKKSE 240


>gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
 gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
          Length = 712

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 224 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 276


>gi|116750857|ref|YP_847544.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699921|gb|ABK19109.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophobacter fumaroxidans MPOB]
          Length = 607

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 188 MPKGVLLVGPPGTGKTLLARAVAGEASVPFFTISGSEFVEM-FVG 231


>gi|259501001|ref|ZP_05743903.1| cell division protein FtsH [Lactobacillus iners DSM 13335]
 gi|302190550|ref|ZP_07266804.1| ATP-dependent metalloprotease FtsH [Lactobacillus iners AB-1]
 gi|309803794|ref|ZP_07697880.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           11V1-d]
 gi|312871501|ref|ZP_07731594.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           3008A-a]
 gi|312872538|ref|ZP_07732606.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874306|ref|ZP_07734338.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2052A-d]
 gi|259167695|gb|EEW52190.1| cell division protein FtsH [Lactobacillus iners DSM 13335]
 gi|308164203|gb|EFO66464.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           11V1-d]
 gi|311090179|gb|EFQ48591.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2052A-d]
 gi|311091900|gb|EFQ50276.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092896|gb|EFQ51247.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           3008A-a]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279


>gi|145355383|ref|XP_001421942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582181|gb|ABP00236.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF     ++F E+ +VG    + +RDL   A
Sbjct: 237 LPKGLLLVGPPGTGKTMLAKAVAGEAGVPFFYSSGSEFEEM-FVGVGARR-VRDLFKAA 293


>gi|297172680|gb|ADI23647.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF4000_15H13]
          Length = 826

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + I+GQQDA  A++ A+R R R     A L+D   P  + +  GPTGVGKT ++R L
Sbjct: 518 ELHKRIVGQQDAIEAISRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELARAL 571

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A    A     I+V+++++ E   V R
Sbjct: 572 AEFLFADRDALIRVDMSEYMEKFSVSR 598


>gi|313682138|ref|YP_004059876.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994]
 gi|313154998|gb|ADR33676.1| AAA ATPase central domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 555

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP+ +LLVGP GVGKT I++ +A  A  PF       F +I YVG   +++
Sbjct: 189 MPRGVLLVGPPGVGKTMIAKAVAAEADVPFFYQSGASFVQI-YVGMGAKRV 238


>gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
 gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
          Length = 692

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ +      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 198 VAGQEGAKQEIQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 252

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AGAPF  +  + F E+ +VG
Sbjct: 253 AGAPFFSMSGSDFVEM-FVG 271


>gi|255020027|ref|ZP_05292100.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970556|gb|EET28045.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 750

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   I GQ  A R ++ A++         A LR    P  + L  GPTGVGKT +SR+L
Sbjct: 452 DLSLVIFGQDRAIRELSAAIKMAR------AGLRHHEKPVGSFLFAGPTGVGKTELSRQL 505

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A L G P ++ +++++ E   V R
Sbjct: 506 ATLLGIPLLRFDMSEYMERHTVSR 529


>gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
 gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
          Length = 850

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 177 LQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 231 FVGVGASR-VRDMFEQA 246


>gi|254519309|ref|ZP_05131365.1| ATPase AAA-2 domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913058|gb|EEH98259.1| ATPase AAA-2 domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 745

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL + I GQ  A   V   ++         A L D+  P  ++L VGPTGVGKT I+R 
Sbjct: 452 SELKKNIFGQNQAIEEVTRCIKMSR------AGLNDDNKPVASMLFVGPTGVGKTEIARV 505

Query: 73  LARLAGAPFIKVEVTKFTE 91
           LA+  G   ++ +++++ E
Sbjct: 506 LAKTLGVDLVRFDMSEYGE 524


>gi|329920463|ref|ZP_08277195.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           1401G]
 gi|328936139|gb|EGG32592.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           1401G]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279


>gi|312874877|ref|ZP_07734896.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2053A-b]
 gi|325913172|ref|ZP_08175542.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B]
 gi|311089622|gb|EFQ48047.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2053A-b]
 gi|325477593|gb|EGC80735.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279


>gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 665

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 243 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 299


>gi|309804710|ref|ZP_07698775.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           09V1-c]
 gi|309806990|ref|ZP_07700972.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           03V1-b]
 gi|309809579|ref|ZP_07703436.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           2503V10-D]
 gi|325912455|ref|ZP_08174850.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII
           143-D]
 gi|308166102|gb|EFO68320.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           09V1-c]
 gi|308166610|gb|EFO68807.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           03V1-b]
 gi|308170060|gb|EFO72096.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           2503V10-D]
 gi|325475797|gb|EGC78968.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII
           143-D]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL D A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279


>gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL
Sbjct: 207 VPKGILLVGPPGTGKTLLARAVAGEAGVNFFTISASQFIEM-FVGVGASR-VRDL 259


>gi|328954667|ref|YP_004372000.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
 gi|328454991|gb|AEB06185.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
          Length = 736

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 269 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 321


>gi|145349496|ref|XP_001419168.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579399|gb|ABO97461.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AGA F  +  ++F E+ +VG    + +RDL   A
Sbjct: 95  VPKGVLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEM-FVGVGAAR-VRDLFQQA 151


>gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
 gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
          Length = 660

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +P  +LLVGP G GKT +++ +A  AG PF  +  + F E  +G     V  + +   +V
Sbjct: 220 IPHGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEV 279

Query: 110 AINIV 114
           A +IV
Sbjct: 280 APSIV 284


>gi|268679887|ref|YP_003304318.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617918|gb|ACZ12283.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 553

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT I++ +A  A  PF       F +I YVG   +++
Sbjct: 187 LPKGVLLVGPPGVGKTMIAKAVAGEASVPFFYQSGATFVQI-YVGMGAKRV 236


>gi|162449912|ref|YP_001612279.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943099|sp|A9FDV9|FTSH2_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|161160494|emb|CAN91799.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 607

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP+ +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +RDL   A
Sbjct: 187 MPRGVLLVGPPGTGKTLLARAIAGEASVPFFSASGSEFVEM-FVGVGAAR-VRDLFSQA 243


>gi|124024074|ref|YP_001018381.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
 gi|123964360|gb|ABM79116.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|307718729|ref|YP_003874261.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192]
 gi|306532454|gb|ADN01988.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L+N  +  ++ A +     PK +LLVG  G GKT ++R +A  
Sbjct: 171 VAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLLARAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 226 AGVPFFHMSGSDFVEM-FVGVGAAR-VRDLFD 255


>gi|302038046|ref|YP_003798368.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606110|emb|CBK42443.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 604

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 186 IPKGVLIVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 240


>gi|227497061|ref|ZP_03927311.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
 gi|226833458|gb|EEH65841.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 245 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDLFEQA 301


>gi|146329099|ref|YP_001209564.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter
           nodosus VCS1703A]
 gi|146232569|gb|ABQ13547.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter
           nodosus VCS1703A]
          Length = 763

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           R ++  L+R     + GQ +A  A+++A++         A LR++  P  + L  GPTGV
Sbjct: 444 RNVLKTLERDLKTVVFGQDEAIHALSVAIKLSR------AGLREKEKPIASFLFTGPTGV 497

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GKT + R+LA + G   ++ +++++ E   V R
Sbjct: 498 GKTEVCRQLAHVMGIKLLRFDMSEYMESHTVSR 530


>gi|332638690|ref|ZP_08417553.1| FtsH-2 peptidase [Weissella cibaria KACC 11862]
          Length = 687

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 281


>gi|332557735|ref|ZP_08412057.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides WS8N]
 gi|332275447|gb|EGJ20762.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides WS8N]
          Length = 771

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569


>gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
 gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
          Length = 655

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 VPKGVLLVGPPGTGKTLMAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261


>gi|37538489|gb|AAQ93011.1| FtsH-like protein precursor [Solanum lycopersicum]
          Length = 708

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLV P G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 286 IPKGCLLVDPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 342


>gi|114706805|ref|ZP_01439705.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi
           HTCC2506]
 gi|114537753|gb|EAU40877.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi
           HTCC2506]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|319781031|ref|YP_004140507.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166919|gb|ADV10457.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|291276455|ref|YP_003516227.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
 gi|290963649|emb|CBG39481.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL ++A
Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 259


>gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 676

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF     + F E+ YVG    + +RDL   A
Sbjct: 204 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEV-YVGVGASR-VRDLFKEA 260


>gi|47094004|ref|ZP_00231737.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
 gi|47017630|gb|EAL08430.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
          Length = 622

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA R VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 318 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 371

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 372 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 414


>gi|255079830|ref|XP_002503495.1| predicted protein [Micromonas sp. RCC299]
 gi|226518762|gb|ACO64753.1| predicted protein [Micromonas sp. RCC299]
          Length = 1184

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R LA  AG PF     T+F E+ +VG    + IR+L + A
Sbjct: 557 IPMGVLLCGPPGTGKTLLARCLAGEAGVPFFACAGTEFMEM-FVGVGAAR-IRNLFNQA 613


>gi|254466814|ref|ZP_05080225.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
 gi|206687722|gb|EDZ48204.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
          Length = 774

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 461 KDLEKSLKRVVFGQDDAITALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 515 VAKQLADQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 565


>gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 567

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 16/103 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
           +PK +LL+GP G GKT +++ +A  A A F  V  + FTE+ YVG   ++ +R L   A 
Sbjct: 184 LPKGVLLIGPPGTGKTMLAKAIAGEANANFFSVHGSDFTEV-YVGVGAKR-VRQLFKQAA 241

Query: 111 -----------INIVRESRRDEV--REQASINAEERILDALVG 140
                      I+ V ++R+ +    +Q +INA    +D   G
Sbjct: 242 KQQPSIIFIDEIDCVGKNRKFDTNGEQQQTINALLAAMDGFEG 284


>gi|152993642|ref|YP_001359363.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum
           sp. NBC37-1]
 gi|151425503|dbj|BAF73006.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum
           sp. NBC37-1]
          Length = 729

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L  +IIGQ +A   +A A++  +     P        P  + L VGPTGVGKTA++ +L
Sbjct: 441 DLSAHIIGQNEAIEELATAIKRSYAGLNAPN------RPIGSFLFVGPTGVGKTALATQL 494

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNV 99
           A      F +++++++ E   + R V
Sbjct: 495 AETMHVHFERIDMSEYMEAHTISRLV 520


>gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B]
 gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus
           cellulolyticus 11B]
          Length = 654

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 183 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 239


>gi|308162675|gb|EFO65056.1| Midasin [Giardia lamblia P15]
          Length = 4835

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 11/113 (9%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109
           +LLVGPTG+GKT   + +AR  G     V ++  T+      GYV   +++I+R+L D  
Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDTADLLGGYVPATLDRILRNLYDTI 411

Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRD 157
             ++ +    R+++  V E     AE+ I   L   +TA S  ++V +K+ R+
Sbjct: 412 IGSLGLYISVRKNQTFVTELHKSYAEKDISKFLANCETALSGMKQVLKKETRE 464


>gi|268680380|ref|YP_003304811.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618411|gb|ACZ12776.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
          Length = 643

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 217 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 273


>gi|119489291|ref|ZP_01622098.1| ATPase [Lyngbya sp. PCC 8106]
 gi|119454765|gb|EAW35910.1| ATPase [Lyngbya sp. PCC 8106]
          Length = 928

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 605 QLESHLHQRVIGQQEAVAAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPTGVGKTEL 658

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA     +    I+++++++ E   V R V
Sbjct: 659 ARALAEFLFDSEDSLIRIDMSEYMEKHAVSRLV 691


>gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 485

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244


>gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
 gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
          Length = 858

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P+ +LLVGP G GKT +++ +A  A  PFI    ++F E+ YVG    ++
Sbjct: 402 PRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVEL-YVGMGASRV 450


>gi|255523432|ref|ZP_05390401.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296184714|ref|ZP_06853125.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255512890|gb|EET89161.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296050496|gb|EFG89919.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 613

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQEEAKESLIEIVDFLHNPKKYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSISGSAFVEM-FVGMGASR-VRDLFEQA 253


>gi|33519575|ref|NP_878407.1| cell division protein FtsH [Candidatus Blochmannia floridanus]
 gi|33517238|emb|CAD83621.1| cell division protein FtsH [Candidatus Blochmannia floridanus]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 186 IPKGILLIGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|300856978|ref|YP_003781962.1| putative ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
 gi|300437093|gb|ADK16860.1| predicted ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
          Length = 617

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 168 VAGQEEAKESLIEIVDFLHNSQKYVSIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 222

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 223 AKVPFFSISGSAFVEM-FVGMGASR-VRDLFKQA 254


>gi|124025672|ref|YP_001014788.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
 gi|123960740|gb|ABM75523.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|124025019|ref|YP_001014135.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A]
 gi|123960087|gb|ABM74870.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|72383431|ref|YP_292786.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL2A]
 gi|72003281|gb|AAZ59083.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
 gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
          Length = 857

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P+ +LLVGP G GKT +++ +A  A  PFI    ++F E+ YVG    ++
Sbjct: 401 PRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVEL-YVGMGASRV 449


>gi|260467070|ref|ZP_05813250.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum
           WSM2075]
 gi|259029179|gb|EEW30475.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum
           WSM2075]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|119222383|gb|ABL62389.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222385|gb|ABL62390.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222387|gb|ABL62391.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222389|gb|ABL62392.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222391|gb|ABL62393.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222393|gb|ABL62394.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222395|gb|ABL62395.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 179

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 49  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 108

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 109 DTTNILFICGGAF 121



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 2   LARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 48


>gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 621

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQEEAKESLVEIVDFLHNPNKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFEQA 253


>gi|319646264|ref|ZP_08000494.1| ClpE protein [Bacillus sp. BT1B_CT2]
 gi|317392014|gb|EFV72811.1| ClpE protein [Bacillus sp. BT1B_CT2]
          Length = 698

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 452

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+RLA  L G     I+++++++ E            GYVG 
Sbjct: 453 LSKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGSPPGYVGH 495


>gi|315185669|gb|EFU19437.1| membrane protease FtsH catalytic subunit [Spirochaeta thermophila
           DSM 6578]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L+N  +  ++ A +     PK +LLVG  G GKT ++R +A  
Sbjct: 171 VAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLLARAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           AG PF  +  + F E+ +VG    + +RDL D
Sbjct: 226 AGVPFFHMSGSDFVEM-FVGVGAAR-VRDLFD 255


>gi|221638713|ref|YP_002524975.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides KD131]
 gi|221159494|gb|ACM00474.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides KD131]
          Length = 771

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569


>gi|254514304|ref|ZP_05126365.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium NOR5-3]
 gi|219676547|gb|EED32912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium NOR5-3]
          Length = 765

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L   + GQ DA  ++A +++         A LR    P  + LL GPTGVGKT 
Sbjct: 454 QKLESNLKMVVFGQDDAVTSLATSIK------MARAGLRGGDKPIGSFLLAGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA++ G   I+ +++++ E   V R
Sbjct: 508 VTRQLAKILGLELIRFDMSEYMERHTVSR 536


>gi|33864065|ref|NP_895625.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
 gi|33635649|emb|CAE21973.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248


>gi|77462844|ref|YP_352348.1| chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1]
 gi|126461737|ref|YP_001042851.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77387262|gb|ABA78447.1| Chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1]
 gi|126103401|gb|ABN76079.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 771

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569


>gi|52079919|ref|YP_078710.1| ATP-dependent Clp protease-like (class III stress gene) ClpE
           [Bacillus licheniformis ATCC 14580]
 gi|52785290|ref|YP_091119.1| ClpE [Bacillus licheniformis ATCC 14580]
 gi|52003130|gb|AAU23072.1| ATP-dependent Clp protease-like (class III stress gene) ClpE
           [Bacillus licheniformis ATCC 14580]
 gi|52347792|gb|AAU40426.1| ClpE [Bacillus licheniformis ATCC 14580]
          Length = 698

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 452

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+RLA  L G     I+++++++ E            GYVG 
Sbjct: 453 LSKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGSPPGYVGH 495


>gi|13473326|ref|NP_104893.1| metalloprotease (cell division protein) FtsH [Mesorhizobium loti
           MAFF303099]
 gi|14024075|dbj|BAB50679.1| metalloprotease (cell division protein); FtsH [Mesorhizobium loti
           MAFF303099]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|284054460|ref|ZP_06384670.1| cell division protein [Arthrospira platensis str. Paraca]
          Length = 75

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 6   IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 62


>gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R +   L    +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 266


>gi|119222209|gb|ABL62302.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222211|gb|ABL62303.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222213|gb|ABL62304.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222215|gb|ABL62305.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222217|gb|ABL62306.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222219|gb|ABL62307.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222221|gb|ABL62308.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222223|gb|ABL62309.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 156

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 24  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 83

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 84  DTTNILFICGGAF 96


>gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 710

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK +LLVGP G GKT I++ +A  A  PF  +  + F E  +G     V ++ +D V  
Sbjct: 203 LPKGVLLVGPPGTGKTLIAKAVAGEARVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAK 262

Query: 110 AINIV 114
           A  I+
Sbjct: 263 APCII 267


>gi|253579752|ref|ZP_04857020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848751|gb|EES76713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 656

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 RDVAGQDEAKESLQEVVDFLHNPGKYTTIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 240 GEAHVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273


>gi|221480992|gb|EEE19406.1| ftsH protease, putative [Toxoplasma gondii GT1]
 gi|221501714|gb|EEE27478.1| ftsH protease, putative [Toxoplasma gondii VEG]
          Length = 902

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILL GP G GKT ++R +A  AG PF+    ++F E+ +VG
Sbjct: 365 LPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVG 408


>gi|294655818|ref|XP_458013.2| DEHA2C07634p [Debaryomyces hansenii CBS767]
 gi|199430630|emb|CAG86073.2| DEHA2C07634p [Debaryomyces hansenii]
          Length = 670

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I
Sbjct: 238 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 287


>gi|119222125|gb|ABL62260.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222127|gb|ABL62261.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222129|gb|ABL62262.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222131|gb|ABL62263.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222133|gb|ABL62264.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222135|gb|ABL62265.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222137|gb|ABL62266.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222139|gb|ABL62267.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222141|gb|ABL62268.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222143|gb|ABL62269.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222145|gb|ABL62270.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222147|gb|ABL62271.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222149|gb|ABL62272.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222151|gb|ABL62273.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222153|gb|ABL62274.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222155|gb|ABL62275.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222157|gb|ABL62276.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222159|gb|ABL62277.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222161|gb|ABL62278.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222163|gb|ABL62279.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222165|gb|ABL62280.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222167|gb|ABL62281.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222169|gb|ABL62282.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222171|gb|ABL62283.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222173|gb|ABL62284.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222175|gb|ABL62285.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222177|gb|ABL62286.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222179|gb|ABL62287.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222181|gb|ABL62288.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222183|gb|ABL62289.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222185|gb|ABL62290.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222187|gb|ABL62291.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222189|gb|ABL62292.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222191|gb|ABL62293.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222193|gb|ABL62294.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222195|gb|ABL62295.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222197|gb|ABL62296.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222199|gb|ABL62297.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222201|gb|ABL62298.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222203|gb|ABL62299.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222205|gb|ABL62300.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222207|gb|ABL62301.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 153

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 21  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 81  DTTNILFICGGAF 93


>gi|114328415|ref|YP_745572.1| ATP-dependent Clp protease ATP-binding subunit clpA [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316589|gb|ABI62649.1| ATP-dependent clp protease ATP-binding subunit clpA [Granulibacter
           bethesdensis CGDNIH1]
          Length = 851

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A++ A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 531 RTLERDLKAMVFGQDKAIEALSAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 584

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LA   G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 585 VARQLATTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 635


>gi|94499671|ref|ZP_01306208.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65]
 gi|94428425|gb|EAT13398.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65]
          Length = 757

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 11/99 (11%)

Query: 4   TFNFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           T N   ++ + +LD+     + GQ +A   +A A++         A L+ E  P  + L 
Sbjct: 441 TVNMDDKKTLMDLDKNMKMMVYGQDEAITELATAIKMSR------AGLKAEEKPIGSFLF 494

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            GPTGVGKT ++R+LA + G   ++ +++++ E   V R
Sbjct: 495 AGPTGVGKTEVTRQLAHVMGMELVRFDMSEYMEAHTVSR 533


>gi|75906365|ref|YP_320661.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75700090|gb|ABA19766.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 876

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR-RAR-----AGMKDPNRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+    +    ++++++++ E   V R V
Sbjct: 624 ARALAQFLFDSDDALVRLDMSEYMEKHSVSRLV 656


>gi|110635496|ref|YP_675704.1| membrane protease FtsH catalytic subunit [Mesorhizobium sp. BNC1]
 gi|110286480|gb|ABG64539.1| membrane protease FtsH catalytic subunit [Chelativorans sp. BNC1]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|154497127|ref|ZP_02035823.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC
           29799]
 gi|150273526|gb|EDN00654.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC
           29799]
          Length = 764

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 263 VAGQDEAKESLVEIIDFLHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 317

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ YVG    + +RDL
Sbjct: 318 ANVPFFSISGSDFVEM-YVGVGASR-VRDL 345


>gi|145500528|ref|XP_001436247.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403386|emb|CAK68850.1| unnamed protein product [Paramecium tetraurelia]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R LA  AG  F +   ++F E+ +VG    Q +R+L   A
Sbjct: 253 LPKGILLVGPPGSGKTLLARALAGEAGCSFFQKSGSEFDEM-FVGVGA-QRVRELFQNA 309


>gi|150014992|ref|YP_001307246.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149901457|gb|ABR32290.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 602

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVG 234


>gi|228982671|ref|ZP_04142930.1| Cell division protease FtsH [Bacillus thuringiensis Bt407]
 gi|228776854|gb|EEM25162.1| Cell division protease FtsH [Bacillus thuringiensis Bt407]
          Length = 568

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LL GP G GKT I++ LA  A  PF  +  + F E  +VG    + +RDL + A
Sbjct: 168 MPKGVLLYGPPGTGKTLIAKALAGEAKVPFFSISGSDFIE-KFVGVGASR-VRDLFENA 224


>gi|86136457|ref|ZP_01055036.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
 gi|85827331|gb|EAQ47527.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
          Length = 776

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 463 KDLEKSLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 517 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 567


>gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
 gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
          Length = 684

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 256


>gi|194368144|gb|ACF57964.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 150

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 22  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 81

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 82  DTTNILFICGGAF 94


>gi|159028807|emb|CAO89978.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 795

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 21/100 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L   IIGQQ+A  AV+ A+R R R      +L++   P  + +  GPTGVGKT +++ 
Sbjct: 471 SQLHERIIGQQEAVNAVSRAIR-RAR-----VNLKNPNRPIASFIFAGPTGVGKTELTKA 524

Query: 73  LARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98
           LA+L   + +  I++++++F E            GY+G N
Sbjct: 525 LAKLLFGSESSMIRLDMSEFMESHTVSKLIGAPPGYIGYN 564


>gi|119222357|gb|ABL62376.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222359|gb|ABL62377.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222361|gb|ABL62378.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222363|gb|ABL62379.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222365|gb|ABL62380.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222367|gb|ABL62381.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222369|gb|ABL62382.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222441|gb|ABL62418.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222443|gb|ABL62419.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222445|gb|ABL62420.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222447|gb|ABL62421.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222449|gb|ABL62422.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222451|gb|ABL62423.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 177

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 47  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 106

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 107 DTTNILFICGGAF 119



 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           AR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 1   ARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 46


>gi|72382133|ref|YP_291488.1| FtsH peptidase [Prochlorococcus marinus str. NATL2A]
 gi|72001983|gb|AAZ57785.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 674

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF     + F E+ YVG    + +RDL   A
Sbjct: 204 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEV-YVGVGASR-VRDLFKEA 260


>gi|32265608|ref|NP_859640.1| ATP-dependent Clp protease ClpA [Helicobacter hepaticus ATCC 51449]
 gi|54035810|sp|Q7VJY3|CLPB_HELHP RecName: Full=Chaperone protein ClpB
 gi|32261656|gb|AAP76706.1| ATP-dependent CLP protease ClpA [Helicobacter hepaticus ATCC 51449]
          Length = 859

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 12/93 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ DA +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 564 IESELAKSVVGQDDAIKAIARAIKRNK-------AGLNDASRPIGSFLFLGPTGVGKTQC 616

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 617 AKTLAEFLFDNAKSLVRIDMSEYMEKHAVSRLV 649


>gi|239907761|ref|YP_002954502.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
 gi|239797627|dbj|BAH76616.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
          Length = 612

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 193 MPKGVLLVGPPGTGKTLLARAVAGEAQVPFFSISGSEFVEM-FVG 236


>gi|229829756|ref|ZP_04455825.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
 gi|229791745|gb|EEP27859.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
          Length = 633

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ++LVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 208 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 260


>gi|226954271|ref|ZP_03824735.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244]
 gi|294650475|ref|ZP_06727834.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226834999|gb|EEH67382.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244]
 gi|292823618|gb|EFF82462.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 761

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 16/104 (15%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L R + GQ +A  A+A A++    R  L A  +      + +  GPTGVGKT ++++LA
Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGSFVFAGPTGVGKTEVTKQLA 508

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           +L G  F++ +++++ E            GYVG +   ++ D +
Sbjct: 509 KLLGVEFVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 552


>gi|119222317|gb|ABL62356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222353|gb|ABL62374.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 21  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 81  DTTNILFICGGAF 93


>gi|330809354|ref|YP_004353816.1| cell division protein ftsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377462|gb|AEA68812.1| putative cell division protein ftsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 608

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + + DL + A
Sbjct: 188 IPKGTLLVGPPGTGKTLVAKAIAGEAGVPFFSISGSEFVEM-FVGVGAAR-VHDLFEQA 244


>gi|254430431|ref|ZP_05044134.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001]
 gi|197624884|gb|EDY37443.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001]
          Length = 627

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEASVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 259


>gi|160947241|ref|ZP_02094408.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270]
 gi|158446375|gb|EDP23370.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 193 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 249


>gi|154318948|ref|XP_001558792.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
 gi|150857993|gb|EDN33185.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 47/226 (20%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-- 110
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N  +++R +  +A  
Sbjct: 150 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN--KLVRAVFSLARK 207

Query: 111 ----------INIVRESRRDEVREQASINAEE--RILDALVGKT------------ATSN 146
                     I+ V   RR    E + +   E   + D L                AT+ 
Sbjct: 208 LQPSIVFIDEIDAVLGQRRSGEHEASGMVKAEFMTLWDGLTSSNKSGLPARIMILGATNR 267

Query: 147 TREV-----------FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
            +++           F   L       + +++ + DT +D +NFDI          L+ +
Sbjct: 268 IQDIDEAILRRMPKKFPVSLPSNSQRRRILNLILKDTKTDPNNFDIE--------YLTRV 319

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            + + GS  K+  R +      E +R++ +R + M  V   +++ V
Sbjct: 320 MAGMSGSDIKEACRDAAMVPVREFIREQRERGMSMSGVDHSNVRGV 365


>gi|145545762|ref|XP_001458565.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426385|emb|CAK91168.1| unnamed protein product [Paramecium tetraurelia]
          Length = 710

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + +QL A +     P+  LL GP G GKT +++  A  AG PF  V  ++F E+ 
Sbjct: 275 LTNSKKFKQLGAKI-----PRGALLTGPPGTGKTMLAKACAGEAGVPFFYVSGSEFVEM- 328

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 329 FVGLGASR-VRDLFEQA 344


>gi|119222453|gb|ABL62424.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222455|gb|ABL62425.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222457|gb|ABL62426.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222459|gb|ABL62427.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222461|gb|ABL62428.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222463|gb|ABL62429.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222465|gb|ABL62430.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222467|gb|ABL62431.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 48  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 107

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 108 DTTNILFICGGAF 120



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R
Sbjct: 1   LARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 47


>gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R +   L    +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 266


>gi|298674165|ref|YP_003725915.1| AAA ATPase central domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287153|gb|ADI73119.1| AAA ATPase central domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 360

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 14/87 (16%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           +IGQ +A++   +    L N         D   +  P+NIL  GP+G GKT +++ LA  
Sbjct: 113 VIGQDNARKKCKLVEKFLEN--------PDKFGKWAPRNILFYGPSGTGKTMLAKGLANK 164

Query: 77  AGAPFIKVEVTKFTEIG-YVGRNVEQI 102
              P I ++ T+   IG YVG   +QI
Sbjct: 165 TDVPIITIKATEL--IGEYVGEGAKQI 189


>gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 667

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ+ AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  AG 
Sbjct: 197 VAGQEGAKQEVQ-EIVEFLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 254

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PF  +  + F E+ +VG    + +RDL   A
Sbjct: 255 PFFSMSGSDFVEM-FVGVGASR-VRDLFHQA 283


>gi|237844855|ref|XP_002371725.1| ftsH protease, putative [Toxoplasma gondii ME49]
 gi|211969389|gb|EEB04585.1| ftsH protease, putative [Toxoplasma gondii ME49]
          Length = 902

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILL GP G GKT ++R +A  AG PF+    ++F E+ +VG
Sbjct: 365 LPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVG 408


>gi|148242501|ref|YP_001227658.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147850811|emb|CAK28305.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 212 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 264


>gi|83595069|ref|YP_428821.1| shikimate kinase [Rhodospirillum rubrum ATCC 11170]
 gi|124053399|sp|Q2RMW1|AROK_RHORT RecName: Full=Shikimate kinase; Short=SK
 gi|83577983|gb|ABC24534.1| shikimate kinase [Rhodospirillum rubrum ATCC 11170]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86
          +P+ ++LVG  G GKT I RRLA++AG PF+  +V
Sbjct: 11 LPRTLVLVGLMGAGKTCIGRRLAQMAGVPFVDADV 45


>gi|297171669|gb|ADI22663.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF0500_22O06]
          Length = 827

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + I+GQQDA  AV+ A+R R R     A L+D   P  + +  GPTGVGKT + R L
Sbjct: 519 ELHKRIVGQQDAIEAVSRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELGRAL 572

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A    A     I+++++++ E   V R
Sbjct: 573 AEFLFADSEALIRIDMSEYMEKFSVSR 599


>gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 255 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNRA 311


>gi|269958447|ref|YP_003328234.1| putative protease [Anaplasma centrale str. Israel]
 gi|269848276|gb|ACZ48920.1| putative protease [Anaplasma centrale str. Israel]
          Length = 610

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R + Q+L   +     PK  LL+GP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 231 FVGVGASR-VRDMFE 244


>gi|255280565|ref|ZP_05345120.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269030|gb|EET62235.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 694

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 191 VAGQDEAKESLQEVVDFLENPGKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 245

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A APF  +  ++F E+ +VG    + +R+L + A
Sbjct: 246 AHAPFFSLSGSEFVEM-FVGVGASR-VRELFEEA 277


>gi|207111392|ref|ZP_03245554.1| cell division protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 52

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL+GP GVGKT I++ LA  A  PF     + F++I YVG
Sbjct: 7  FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVG 51


>gi|156082435|ref|XP_001608702.1| ATPase, AAA family domain containing protein [Babesia bovis T2Bo]
 gi|154795951|gb|EDO05134.1| ATPase, AAA family domain containing protein [Babesia bovis]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 30  VAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           V   L+N+  +  L  +L   L+  PK +LL GP G GKT +++ +A +AGA   +V  +
Sbjct: 400 VKKTLKNKVAQPILRPELHTGLLRAPKGVLLFGPPGTGKTTLAKWIANVAGATCFEVSPS 459

Query: 88  KFTEIGYVGRNVEQIIRDLVDVA 110
             T   Y G + E II+ L  VA
Sbjct: 460 SITS-KYHGES-ESIIKALFKVA 480


>gi|308807062|ref|XP_003080842.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
 gi|116059303|emb|CAL55010.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
          Length = 891

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AGA F  +  ++F E+ +VG    + +RDL   A
Sbjct: 439 VPKGVLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEM-FVGVGAAR-VRDLFQQA 495


>gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 667

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 252


>gi|330840857|ref|XP_003292425.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum]
 gi|325077347|gb|EGC31066.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E  S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 147 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 201

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 202 LAKAVAHHTSAAFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 241


>gi|320583258|gb|EFW97473.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia angusta DL-1]
          Length = 715

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  AG PF+ V  ++F E+ YVG    + +RDL   A
Sbjct: 277 IPKGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-YVGVGASR-VRDLFSTA 333


>gi|259505904|ref|ZP_05748806.1| cell division protein HflB [Corynebacterium efficiens YS-314]
 gi|259166508|gb|EEW51062.1| cell division protein HflB [Corynebacterium efficiens YS-314]
          Length = 328

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L +  R Q L A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 184 LEDPTRYQDLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 237

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 238 FVGVGASR-VRDLFKQA 253


>gi|134094400|ref|YP_001099475.1| cell division protease [Herminiimonas arsenicoxydans]
 gi|133738303|emb|CAL61348.1| Cell division protease [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 176 LRDPTRFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 230 FVGVGASR-VRDMFDNA 245


>gi|119222289|gb|ABL62342.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222291|gb|ABL62343.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222293|gb|ABL62344.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222295|gb|ABL62345.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222297|gb|ABL62346.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222299|gb|ABL62347.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222301|gb|ABL62348.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222303|gb|ABL62349.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222305|gb|ABL62350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222307|gb|ABL62351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222309|gb|ABL62352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222311|gb|ABL62353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222313|gb|ABL62354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222315|gb|ABL62355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222319|gb|ABL62357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222321|gb|ABL62358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222323|gb|ABL62359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222325|gb|ABL62360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222327|gb|ABL62361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222329|gb|ABL62362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222331|gb|ABL62363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222333|gb|ABL62364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222335|gb|ABL62365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222337|gb|ABL62366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222339|gb|ABL62367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222341|gb|ABL62368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222343|gb|ABL62369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222345|gb|ABL62370.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222347|gb|ABL62371.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222349|gb|ABL62372.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222351|gb|ABL62373.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222355|gb|ABL62375.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 21  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 81  DTTNILFICGGAF 93


>gi|186470797|ref|YP_001862115.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|310943122|sp|B2JVU2|FTSH_BURP8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|184197106|gb|ACC75069.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247


>gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDL 252


>gi|33240371|ref|NP_875313.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237898|gb|AAP99965.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|209543912|ref|YP_002276141.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531589|gb|ACI51526.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 867

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R ++GQ+ A +AVA A+R R R     A L+D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELRRSVVGQEPALKAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELCKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++V++++F E   V R
Sbjct: 623 ARFLFDDEKALLRVDMSEFMEKHAVSR 649


>gi|254995321|ref|ZP_05277511.1| cell division protein (ftsH) [Anaplasma marginale str. Mississippi]
          Length = 610

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R + Q+L   +     PK  LL+GP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 231 FVGVGASR-VRDMFE 244


>gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 614

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|295397832|ref|ZP_06807896.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294973929|gb|EFG49692.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 232 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEM-FVGVGASR-VRDLFENA 288


>gi|126739846|ref|ZP_01755537.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
 gi|126719078|gb|EBA15789.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
          Length = 743

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 430 KDLEKTLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 483

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 484 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 534


>gi|19112067|ref|NP_595275.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74675997|sp|O43078|SUR2_SCHPO RecName: Full=Protein sur2
 gi|2894288|emb|CAA17029.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 660

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G  DAK ++  A+   + R +L   LR+ +  + +LL GP G GKT ++R +A  A A
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQGLREPV--QGMLLFGPPGTGKTMLARAVATEAKA 438

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   Y+G + E+++R L +VA
Sbjct: 439 TFFSISASSLTS-KYLG-DSEKLVRALFEVA 467


>gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDL 252


>gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str.
           MIT 9313]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|310658246|ref|YP_003935967.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii DSM
           519]
 gi|308825024|emb|CBH21062.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii]
          Length = 656

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +S+ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 194 IPKGILMVGPPGTGKTYLSKAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 349 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 405


>gi|152990129|ref|YP_001355851.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
 gi|151421990|dbj|BAF69494.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
          Length = 729

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-----ILLVGPTGV 64
           + +  +L   ++GQ++A   +A+A++            R  L P N      L VGPTGV
Sbjct: 437 KNLEEKLKERVLGQEEAVEQLAMAIKRS----------RAGLNPPNKPIGSFLFVGPTGV 486

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GKT +++ LAR  G  F + +++++ E   V R
Sbjct: 487 GKTELAKELARTMGVHFERFDMSEYMEKHAVSR 519


>gi|148708697|gb|EDL40644.1| fidgetin-like 1, isoform CRA_a [Mus musculus]
          Length = 701

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 461 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 516


>gi|56417151|ref|YP_154225.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475516|ref|YP_002563933.1| cell division protein (ftsH) [Anaplasma marginale str. Florida]
 gi|255003503|ref|ZP_05278467.1| cell division protein (ftsH) [Anaplasma marginale str. Puerto Rico]
 gi|255004625|ref|ZP_05279426.1| cell division protein (ftsH) [Anaplasma marginale str. Virginia]
 gi|56388383|gb|AAV86970.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419654|gb|ACM49677.1| cell division protein (ftsH) [Anaplasma marginale str. Florida]
          Length = 610

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R + Q+L   +     PK  LL+GP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 231 FVGVGASR-VRDMFE 244


>gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum]
          Length = 729

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+  VG+   + +RDL + A
Sbjct: 281 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEV-LVGQGARR-VRDLFERA 337


>gi|319957420|ref|YP_004168683.1| membrane protease ftsh catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
 gi|319419824|gb|ADV46934.1| membrane protease FtsH catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
          Length = 696

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFEQA 271


>gi|332975520|gb|EGK12410.1| ATP-dependent Clp protease [Desmospora sp. 8437]
          Length = 722

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +++   L+R +IGQ +A R VA A+R NR       A LR    P  + L VGPTGVGKT
Sbjct: 422 KDLPDRLNRQVIGQAEAVRKVAKAIRRNR-------AGLRKGTRPIGSFLFVGPTGVGKT 474

Query: 68  AISRRLAR 75
            +++ LAR
Sbjct: 475 ELAKTLAR 482


>gi|308481279|ref|XP_003102845.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
 gi|308260931|gb|EFP04884.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ ILL GP G GKT +++ +AR AG  FI ++V+  T+  Y
Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 158


>gi|293364098|ref|ZP_06610834.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2]
 gi|292552588|gb|EFF41362.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108
           MPK ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V Q+I +   
Sbjct: 230 MPKGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRVRQVINEARK 288

Query: 109 VAINIV 114
            A +I+
Sbjct: 289 NAPSII 294


>gi|224083241|ref|XP_002306970.1| predicted protein [Populus trichocarpa]
 gi|222856419|gb|EEE93966.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF     ++F E+ +VG    + +RDL + A
Sbjct: 241 IPKGCLLVGSPGTGKTLLARAVAGEAGVPFFSCAASEFVEM-FVGVGASR-VRDLFEKA 297


>gi|157164271|ref|YP_001466756.1| M41 family peptidase [Campylobacter concisus 13826]
 gi|157101415|gb|EAT97495.2| putative Cell division protease FtsH homolog [Campylobacter
           concisus 13826]
          Length = 558

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +L++GP GVGKT +++ +A  A  PF       F +I YVG   +++
Sbjct: 192 MPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQI-YVGMGAKRV 241


>gi|148708698|gb|EDL40645.1| fidgetin-like 1, isoform CRA_b [Mus musculus]
          Length = 686

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 446 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 501


>gi|89275983|gb|ABD66350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275985|gb|ABD66351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275987|gb|ABD66352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275989|gb|ABD66353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275991|gb|ABD66354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275993|gb|ABD66355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275995|gb|ABD66356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275997|gb|ABD66357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275999|gb|ABD66358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276001|gb|ABD66359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276003|gb|ABD66360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276005|gb|ABD66361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276007|gb|ABD66362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276009|gb|ABD66363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276011|gb|ABD66364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276013|gb|ABD66365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276015|gb|ABD66366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276017|gb|ABD66367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276019|gb|ABD66368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276021|gb|ABD66369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368130|gb|ACF57957.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368132|gb|ACF57958.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368134|gb|ACF57959.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368136|gb|ACF57960.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368138|gb|ACF57961.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368140|gb|ACF57962.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368142|gb|ACF57963.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368146|gb|ACF57965.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368148|gb|ACF57966.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368150|gb|ACF57967.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368152|gb|ACF57968.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368154|gb|ACF57969.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368156|gb|ACF57970.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368158|gb|ACF57971.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368160|gb|ACF57972.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 150

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 22  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 81

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 82  DTTNILFICGGAF 94


>gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 626

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245


>gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 615

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|308451925|ref|XP_003088853.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
 gi|308245130|gb|EFO89082.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
          Length = 364

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ ILL GP G GKT +++ +AR AG  FI ++V+  T+  Y
Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 158


>gi|295109828|emb|CBL23781.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 536

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 117 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 173


>gi|31560300|ref|NP_068691.2| fidgetin-like protein 1 [Mus musculus]
 gi|254039741|ref|NP_001156831.1| fidgetin-like protein 1 [Mus musculus]
 gi|254039743|ref|NP_001156832.1| fidgetin-like protein 1 [Mus musculus]
 gi|81913480|sp|Q8BPY9|FIGL1_MOUSE RecName: Full=Fidgetin-like protein 1
 gi|26342268|dbj|BAC34796.1| unnamed protein product [Mus musculus]
 gi|30354687|gb|AAH51942.1| Fidgetin-like 1 [Mus musculus]
 gi|30851350|gb|AAH52415.1| Fidgetin-like 1 [Mus musculus]
 gi|56205315|emb|CAI25376.1| fidgetin-like 1 [Mus musculus]
 gi|74180683|dbj|BAE25569.1| unnamed protein product [Mus musculus]
 gi|148708699|gb|EDL40646.1| fidgetin-like 1, isoform CRA_c [Mus musculus]
          Length = 683

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498


>gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|119222265|gb|ABL62330.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 34  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 93

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 94  DTTNILFICGGAF 106


>gi|10442029|gb|AAG17290.1|AF263914_1 fidgetin-like 1 [Mus musculus]
          Length = 683

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498


>gi|66805379|ref|XP_636422.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4]
 gi|464860|sp|P34123|PRS6B_DICDI RecName: Full=26S protease regulatory subunit 6B homolog; AltName:
           Full=Tat-binding protein homolog 2
 gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein [Dictyostelium discoideum]
 gi|60464797|gb|EAL62917.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E  S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 145 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 199

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 200 LAKAVAHHTSAAFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 239


>gi|301059773|ref|ZP_07200667.1| Cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300446099|gb|EFK09970.1| Cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 605

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVG  G GKT ++R +A +AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 192 IPKGVLLVGAPGTGKTLLARAIAGVAGVPFFTLSGSDFVEM-FVGVGASR-VRDLFN 246


>gi|300916540|ref|ZP_07133270.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
 gi|300416164|gb|EFJ99474.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|256005875|ref|ZP_05430822.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|255990144|gb|EEU00279.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|316940931|gb|ADU74965.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313]
          Length = 803

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A ++VA A+R NR       AD +    P + + VGPTGVGKT + + LA
Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G+    I+++++++ E            GYVG
Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572


>gi|260950831|ref|XP_002619712.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238847284|gb|EEQ36748.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 677

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I
Sbjct: 244 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 293


>gi|114797928|ref|YP_759752.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas
           neptunium ATCC 15444]
 gi|114738102|gb|ABI76227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas
           neptunium ATCC 15444]
          Length = 771

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ +A  A+A +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 459 ADLKRVVFGQDEAIEALAASIK------LARAGLREPNKPIGSYLFTGPTGVGKTEVAKQ 512

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           LA + G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 LASIMGVEMLRFDMSEYMERHTVSRLIGAPPGYVGYDEGGLLTDGVD 559


>gi|26353602|dbj|BAC40431.1| unnamed protein product [Mus musculus]
          Length = 683

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498


>gi|56698001|ref|YP_168372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria
           pomeroyi DSS-3]
 gi|56679738|gb|AAV96404.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria
           pomeroyi DSS-3]
          Length = 775

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 462 KDLEASLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 VAKQLAETLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572


>gi|125972833|ref|YP_001036743.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|125713058|gb|ABN51550.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
          Length = 803

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A ++VA A+R NR       AD +    P + + VGPTGVGKT + + LA
Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G+    I+++++++ E            GYVG
Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572


>gi|326570972|gb|EGE20996.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC7]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|326562899|gb|EGE13186.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 46P47B1]
 gi|326565260|gb|EGE15445.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 12P80B1]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|225873635|ref|YP_002755094.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
 gi|310943113|sp|C1F8X6|FTSH_ACIC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|225793772|gb|ACO33862.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 349 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 405


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 346 LPKGVLLVGPPGTGKTLLARAVAGEASVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 402


>gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
 gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
          Length = 679

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK  +      L +  R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 176 VAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 262


>gi|50084542|ref|YP_046052.1| ATP-binding protease component [Acinetobacter sp. ADP1]
 gi|49530518|emb|CAG68230.1| ATP-binding protease component [Acinetobacter sp. ADP1]
          Length = 758

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L R + GQ +A  A+A A++    R  L A  +      N +  GPTGVGKT ++++LA
Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGNFVFAGPTGVGKTEVTKQLA 508

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
           +L G   ++ +++++ E   V R
Sbjct: 509 KLLGVELVRFDMSEYMERHAVSR 531


>gi|326575833|gb|EGE25756.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis CO72]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|326570235|gb|EGE20280.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC8]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|225405623|ref|ZP_03760812.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
 gi|225042855|gb|EEG53101.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
          Length = 613

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 206 LPKGALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 262


>gi|281417032|ref|ZP_06248052.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|281408434|gb|EFB38692.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
          Length = 803

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A ++VA A+R NR       AD +    P + + VGPTGVGKT + + LA
Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G+    I+++++++ E            GYVG
Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572


>gi|119222255|gb|ABL62325.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222257|gb|ABL62326.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222259|gb|ABL62327.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222261|gb|ABL62328.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222263|gb|ABL62329.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222267|gb|ABL62331.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222269|gb|ABL62332.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222271|gb|ABL62333.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222273|gb|ABL62334.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222275|gb|ABL62335.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222277|gb|ABL62336.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222279|gb|ABL62337.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222281|gb|ABL62338.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222283|gb|ABL62339.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222285|gb|ABL62340.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222287|gb|ABL62341.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V  K G          +
Sbjct: 34  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 93

Query: 292 NTDHILFIASGAF 304
           +T +ILFI  GAF
Sbjct: 94  DTTNILFICGGAF 106


>gi|326576915|gb|EGE26821.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis O35E]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|224535858|ref|ZP_03676397.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522581|gb|EEF91686.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 742

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 ISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|83859795|ref|ZP_00953315.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633]
 gi|83852154|gb|EAP90008.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT  +R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|326563660|gb|EGE13912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 103P14B1]
 gi|326573268|gb|EGE23236.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 101P30B1]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
 gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
          Length = 682

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 259


>gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
 gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
          Length = 625

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 215 LPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGMGAAK-VRDL 267


>gi|120556298|ref|YP_960649.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326147|gb|ABM20462.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 624

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|322436274|ref|YP_004218486.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9]
 gi|321164001|gb|ADW69706.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242


>gi|296113265|ref|YP_003627203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis RH4]
 gi|295920959|gb|ADG61310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis RH4]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|295111163|emb|CBL27913.1| ATP-dependent metalloprotease FtsH [Synergistetes bacterium SGP1]
          Length = 633

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 207 LPKGVLLVGPPGTGKTMLAKATAGEAGVPFFFITGSSFVEM-FVGVGAAR-VRDMFEQA 263


>gi|325679414|ref|ZP_08158999.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
 gi|324109011|gb|EGC03242.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLLGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 260


>gi|283781331|ref|YP_003372086.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
 gi|310946755|sp|D2QZ34|FTSH_PIRSD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283439784|gb|ADB18226.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
          Length = 700

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 254 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDMFQQA 310


>gi|253578998|ref|ZP_04856269.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849941|gb|EES77900.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 201 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 257


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 351 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 407


>gi|194246667|ref|YP_002004306.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|310943097|sp|B3QZS3|FTSH2_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|193807024|emb|CAP18460.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 686

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N ++ + + A +     PK +LL GP GVGKT +++ +A  A  PF  V  + F E+ 
Sbjct: 251 LKNPFKYEAMGARI-----PKGVLLYGPPGVGKTLLAKAVAGEAKVPFFAVSGSDFIEV- 304

Query: 94  YVGRNVEQIIRDLVDVA 110
           YVG    + IR L + A
Sbjct: 305 YVGLGASR-IRKLFNEA 320


>gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002]
 gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 212 IPRGMLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 264


>gi|32822914|gb|AAH55215.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Danio
           rerio]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|326560255|gb|EGE10643.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 7169]
 gi|326566427|gb|EGE16577.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC1]
          Length = 766

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           + L  GPTGVGKT ISR+LA L G P ++ +++++ E            GYVG
Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549


>gi|293606967|ref|ZP_06689313.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
 gi|292814633|gb|EFF73768.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
          Length = 513

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 93  IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 149


>gi|301098998|ref|XP_002898591.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262105016|gb|EEY63068.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP+G GKT ++R +A  AG  F+    + F E+  VGR   + +RDL   A
Sbjct: 205 VPKGVLLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEM-LVGRGAAR-VRDLFTQA 261


>gi|302537185|ref|ZP_07289527.1| cell division protein [Streptomyces sp. C]
 gi|302446080|gb|EFL17896.1| cell division protein [Streptomyces sp. C]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP  +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 232 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 291

Query: 110 AINIV 114
           A  IV
Sbjct: 292 APAIV 296


>gi|189230104|ref|NP_001121376.1| hypothetical protein LOC100158464 [Xenopus (Silurana) tropicalis]
 gi|157422738|gb|AAI53480.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Danio
           rerio]
 gi|183985575|gb|AAI66067.1| LOC100158464 protein [Xenopus (Silurana) tropicalis]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|149198608|ref|ZP_01875652.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155]
 gi|149138323|gb|EDM26732.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155]
          Length = 754

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + + GQ  A  AV  A++         + L DE  P  + L  GPTGVGKT ++
Sbjct: 458 LADDLKKLVYGQDKAVEAVVKAVKTAR------SGLGDEDKPYGSFLFTGPTGVGKTELA 511

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++L+ L G  F++ ++++++E   + R
Sbjct: 512 KQLSSLLGVKFLRFDMSEYSEKHSISR 538


>gi|126696787|ref|YP_001091673.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301]
 gi|126543830|gb|ABO18072.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301]
          Length = 620

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|134287770|ref|YP_001109936.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4]
 gi|134132420|gb|ABO60155.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 633

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252


>gi|328873251|gb|EGG21618.1| 26S protease regulatory subunit 6B [Dictyostelium fasciculatum]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E  S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 152 PTEGYSDIGGSDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 206

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 LAKAVAHHTSASFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 246


>gi|254510894|ref|ZP_05122961.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium KLH11]
 gi|221534605|gb|EEE37593.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium KLH11]
          Length = 767

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ +A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 454 KDLEASLKRVVFGQDEAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 508 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 564


>gi|237820651|ref|NP_956044.2| proteasome 26S subunit, ATPase, 4 [Danio rerio]
 gi|169146760|emb|CAQ15368.1| novel protein (zgc:63709) [Danio rerio]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
 gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242


>gi|78779742|ref|YP_397854.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9312]
 gi|78713241|gb|ABB50418.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 620

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|56118688|ref|NP_001008010.1| proteasome 26S ATPase subunit 4 isoform 1 [Xenopus (Silurana)
           tropicalis]
 gi|51703677|gb|AAH80888.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Xenopus
           (Silurana) tropicalis]
 gi|89268750|emb|CAJ83257.1| Psmc4 [Xenopus (Silurana) tropicalis]
          Length = 420

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 154 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 208

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 209 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|33861820|ref|NP_893381.1| cell division protein FtsH3 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640188|emb|CAE19723.1| cell division protein FtsH3 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 620

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|320583004|gb|EFW97220.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Pichia angusta DL-1]
          Length = 668

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 234 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-VRELFSKA 290


>gi|296161227|ref|ZP_06844036.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888568|gb|EFG68377.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 634

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 196 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252


>gi|292491672|ref|YP_003527111.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291580267|gb|ADE14724.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 216 IPKGILLMGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 272


>gi|72382669|ref|YP_292024.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL2A]
 gi|72002519|gb|AAZ58321.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 624

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|296533023|ref|ZP_06895671.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas
           cervicalis ATCC 49957]
 gi|296266652|gb|EFH12629.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas
           cervicalis ATCC 49957]
          Length = 790

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A++ A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 465 RNLERDLKAMVFGQDQAIDALSAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 518

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 519 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDSID 569


>gi|291546276|emb|CBL19384.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5]
          Length = 621

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 202 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258


>gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 502

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
            +Q+ K  VA  LRN  +   L   L     PK +LLVGP G GKT ++R +A  A  PF
Sbjct: 80  AKQELKEIVAF-LRNPEKFSILGGKL-----PKGVLLVGPPGTGKTLLARAVAGEAKVPF 133

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
                 +F E+  VG+   + +RDL   A
Sbjct: 134 FHAAGPEFDEV-LVGQGARR-VRDLFKAA 160


>gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia]
          Length = 648

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R LA  AG  F     ++F E+ +VG    + +RD+   A
Sbjct: 250 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVGVGASR-VRDIFKAA 306


>gi|123968995|ref|YP_001009853.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601]
 gi|123199105|gb|ABM70746.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601]
          Length = 620

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|123966658|ref|YP_001011739.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515]
 gi|123201024|gb|ABM72632.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515]
          Length = 620

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|94676658|ref|YP_589061.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219808|gb|ABF13967.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 627

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 170 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 223

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 224 FVGVGASR-VRDMFDQA 239


>gi|268537162|ref|XP_002633717.1| Hypothetical protein CBG03401 [Caenorhabditis briggsae]
 gi|187036624|emb|CAP24301.1| hypothetical protein CBG_03401 [Caenorhabditis briggsae AF16]
          Length = 341

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ ILL GP G GKT +++ +AR AG  FI ++V+  T+  Y
Sbjct: 116 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 157


>gi|32490980|ref|NP_871234.1| hypothetical protein WGLp231 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166186|dbj|BAC24377.1| hflB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 243


>gi|189463817|ref|ZP_03012602.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
 gi|189438767|gb|EDV07752.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
          Length = 742

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 ISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|124026388|ref|YP_001015503.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A]
 gi|123961456|gb|ABM76239.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A]
          Length = 635

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 213 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 269


>gi|303228848|ref|ZP_07315661.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a]
 gi|302516468|gb|EFL58397.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFGQA 242


>gi|229829568|ref|ZP_04455637.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM
           14600]
 gi|229791557|gb|EEP27671.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM
           14600]
          Length = 773

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 195 VAGQDEAKESLVEVVDFLHNPRKYIEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 249

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 250 AGVPFFSLAGSDFVEM-FVGVGASR-VRDLFKEA 281


>gi|198427611|ref|XP_002131406.1| PREDICTED: similar to fidgetin-like 1 [Ciona intestinalis]
          Length = 597

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   ++G+  E+++R L  VA
Sbjct: 356 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWIGQG-EKMVRALFAVA 411


>gi|197294456|ref|YP_001798997.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853783|emb|CAM11716.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 708

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAHFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|152997266|ref|YP_001342101.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           sp. MWYL1]
 gi|150838190|gb|ABR72166.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           sp. MWYL1]
          Length = 751

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 11/97 (11%)

Query: 6   NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60
           N   R+++S L+R     + GQ +A  A++ A++         A L+ E  P  + L+ G
Sbjct: 440 NSDDRQVLSNLERNLKMVVFGQDNAIDALSAAIKLSR------AGLKAEQKPIGSFLMAG 493

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT ++++LA+  G   I+ +++++ E   V R
Sbjct: 494 PTGVGKTEVTKQLAKQLGLELIRFDMSEYMERHAVSR 530


>gi|224003627|ref|XP_002291485.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335]
 gi|220973261|gb|EED91592.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335]
          Length = 578

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK +FNF P   ++  D  + G   AK  +A  +   + +Q          +P   LL G
Sbjct: 112 MKPSFNFHPTTNITFED--VAGCDGAKLELAEIVD--FLKQPQAYTNNGCRIPAGALLYG 167

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P G GKT +++ +A  AG PF+ +  ++F E+ YVG    ++
Sbjct: 168 PPGTGKTLLAKAVAGEAGVPFVSMSGSEFVEL-YVGVGASRV 208


>gi|213409774|ref|XP_002175657.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212003704|gb|EEB09364.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 629

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G +DAK ++  A+   + R +L   LR+ +  + +LL GP G GKT +++ +A  A A
Sbjct: 351 IAGLEDAKNSLKEAVIYPFLRPELFCGLREPV--QGMLLFGPPGTGKTMLAKAVATEAKA 408

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   Y+G + E+++R L  VA
Sbjct: 409 TFFSISASSLTS-KYLGES-EKLVRALFTVA 437


>gi|213409103|ref|XP_002175322.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003369|gb|EEB09029.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 350

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104
           PK +LL GP G GKT +++ LA+ +GA FI V V   T+   G   + VE + R
Sbjct: 127 PKGLLLYGPPGCGKTMLAKALAKQSGATFINVNVGLLTDKWFGESNKLVEALFR 180


>gi|156045467|ref|XP_001589289.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980]
 gi|154694317|gb|EDN94055.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 132 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN--KLVRAVFSLA 187


>gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 672

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK  +      L +  R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 176 VAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 262


>gi|254527134|ref|ZP_05139186.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538558|gb|EEE41011.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 620

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|118411032|ref|YP_874427.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
 gi|116739779|gb|ABK20650.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
          Length = 624

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + IRDL   A
Sbjct: 212 IPKGVLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEM-FIGIGASR-IRDLFKKA 268


>gi|158319193|ref|YP_001511700.1| ATPase [Alkaliphilus oremlandii OhILAs]
 gi|158139392|gb|ABW17704.1| ATPase AAA-2 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 758

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 11/81 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           +L R ++GQ+DA R+++  +R NR       +  R +  P + + VGPTGVGKT + R L
Sbjct: 465 QLHRRVVGQKDAVRSLSRTIRRNR-------SGFRKKRKPASFIFVGPTGVGKTELVRAL 517

Query: 74  A-RLAGA--PFIKVEVTKFTE 91
           A  L G+    I+V+++++ E
Sbjct: 518 AEELFGSEEAMIRVDMSEYME 538


>gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
 gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
          Length = 577

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK  LL+GP G GKT ++R +A  A  PF  +  ++F E  +G     V Q+ +  ++ 
Sbjct: 155 IPKGFLLIGPPGTGKTLLARAIAGEANVPFFSISASEFVELFVGVGASRVRQLFKKALEK 214

Query: 110 AINIV 114
           + +I+
Sbjct: 215 SPSII 219


>gi|310792034|gb|EFQ27561.1| ATPase [Glomerella graminicola M1.001]
          Length = 425

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +AR +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 168 PSGVLLYGPPGCGKTMLAKAVARESGASFINLHISTVTEKWYGDSN--KLVRAVFSLA 223


>gi|301109904|ref|XP_002904032.1| fidgetin-like protein [Phytophthora infestans T30-4]
 gi|262096158|gb|EEY54210.1| fidgetin-like protein [Phytophthora infestans T30-4]
          Length = 576

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G Q AK+ V   +     R  +   LR   +PK +LL GP G GKT I + +A  +GA
Sbjct: 300 IAGLQFAKKCVNELVIWPMARPDIFTGLRS--LPKGLLLFGPPGTGKTLIGKAIASQSGA 357

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   ++G+  E+++R L  VA
Sbjct: 358 TFFSISASSLTS-KWIGQG-EKLVRTLFAVA 386


>gi|152990623|ref|YP_001356345.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
 gi|151422484|dbj|BAF69988.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
          Length = 862

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 12/90 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL +Y++GQ  A +AVA A+ RN+       A L D   P  + + +GPTGVGKT  ++ 
Sbjct: 568 ELKKYVVGQDAAIKAVARAIKRNK-------AGLSDTNRPIGSFMFLGPTGVGKTETAKT 620

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LAR         I+++++++ E   V R V
Sbjct: 621 LARFLFDTEKSLIRIDMSEYMEKHAVSRLV 650


>gi|154484306|ref|ZP_02026754.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC
           27560]
 gi|149734783|gb|EDM50700.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC
           27560]
          Length = 657

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +V      L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQEEAKESVVELVDFLHNPGKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 242 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 273


>gi|84994156|ref|XP_951800.1| 26S protease subunit [Theileria annulata strain Ankara]
 gi|65301961|emb|CAI74068.1| 26S protease subunit, putative [Theileria annulata]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+G  D K+ V   + N      L   L     PK ILL GP G GKT I++ +A ++ A
Sbjct: 350 IVGLDDVKKVVIDKIVNPILMPNLHIGLFK--APKGILLFGPPGTGKTTIAKWIANVSNA 407

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            F ++  +  T   Y G + E II+ L  VA+
Sbjct: 408 TFFEISPSSITSKFY-GES-ESIIKTLFKVAL 437


>gi|33865834|ref|NP_897393.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           8102]
 gi|33633004|emb|CAE07815.1| FtsH ATP-dependent protease homolog [Synechococcus sp. WH 8102]
          Length = 637

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 213 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265


>gi|148260430|ref|YP_001234557.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326403623|ref|YP_004283705.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146402111|gb|ABQ30638.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325050485|dbj|BAJ80823.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 VPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247


>gi|157413822|ref|YP_001484688.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215]
 gi|157388397|gb|ABV51102.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215]
          Length = 620

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|149248642|ref|XP_001528708.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448662|gb|EDK43050.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1011

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK+ VA     L++  + ++L A +     P+  +L GP G GKT ++R  A  
Sbjct: 543 VAGMEEAKQEVAEFVSFLKDPEKYEKLGAKI-----PRGAILSGPPGTGKTLLARATAGE 597

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 598 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 629


>gi|153953240|ref|YP_001394005.1| FtsH2 [Clostridium kluyveri DSM 555]
 gi|146346121|gb|EDK32657.1| FtsH2 [Clostridium kluyveri DSM 555]
          Length = 609

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 222 AKVPFFSISGSAFVEM-FVGMGAAR-VRDLFQQA 253


>gi|58865396|ref|NP_001011913.1| fidgetin-like protein 1 [Rattus norvegicus]
 gi|81911001|sp|Q6GX84|FIGL1_RAT RecName: Full=Fidgetin-like protein 1
 gi|48686585|gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus]
 gi|48686587|gb|AAT46049.1| fidgetin-like 1 [Rattus norvegicus]
 gi|149016958|gb|EDL76063.1| rCG24478 [Rattus norvegicus]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492


>gi|291542951|emb|CBL16061.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
           bromii L2-63]
          Length = 780

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 20/97 (20%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           +EL + IIGQ +A +A+A A+R R R Q  P        P + + VGPTGVGKT + + L
Sbjct: 485 NELKKKIIGQDEAVKALASAIR-RSRVQISP-----RRRPASFIFVGPTGVGKTELVKVL 538

Query: 74  AR-LAGAP--FIKVEVTKFTE-----------IGYVG 96
           ++ L   P   I++++++F E            GYVG
Sbjct: 539 SKELFDTPETLIRLDMSEFMEKHSVSKIIGSPPGYVG 575


>gi|260436025|ref|ZP_05789995.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
 gi|260413899|gb|EEX07195.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 215 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267


>gi|160893082|ref|ZP_02073870.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50]
 gi|156865165|gb|EDO58596.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50]
          Length = 624

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ YVG    + +RDL   A 
Sbjct: 213 LPKGALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFVEM-YVGVGASR-VRDLFKQAT 270

Query: 112 NIV 114
            + 
Sbjct: 271 QMA 273


>gi|77464984|ref|YP_354488.1| chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
 gi|77389402|gb|ABA80587.1| Chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
          Length = 870

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642


>gi|87122217|ref|ZP_01078100.1| ATP-binding protease component ClpA [Marinomonas sp. MED121]
 gi|86162537|gb|EAQ63819.1| ATP-binding protease component ClpA [Marinomonas sp. MED121]
          Length = 750

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 11/99 (11%)

Query: 4   TFNFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           + N   R+++  L+R     + GQ  A  ++A A++    R  L AD +    P  + L+
Sbjct: 438 SVNTDDRKVLENLERNLKMVVFGQDQAIESLADAIK--LSRAGLKADQK----PIGSFLM 491

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            GPTGVGKT ++R+LA+  G   I+ +++++ E   V R
Sbjct: 492 AGPTGVGKTEVTRQLAKQLGVELIRFDMSEYMERHAVSR 530


>gi|312880490|ref|ZP_07740290.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310783781|gb|EFQ24179.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 624

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           PK +LL GP G GKT ++R +A  AG PF +   + F E+ YVG    ++
Sbjct: 215 PKGVLLFGPPGTGKTLLARAVAGEAGVPFFRAAGSDFVEM-YVGVGASRV 263


>gi|303230955|ref|ZP_07317698.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6]
 gi|302514337|gb|EFL56336.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFGQA 242


>gi|299830570|ref|YP_003735018.1| cell division protein FtsH-like protein [Durinskia baltica]
 gi|297384934|gb|ADI40233.1| cell division protein FtsH-like protein [Durinskia baltica]
          Length = 625

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + IRDL   A
Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIANEASVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 270


>gi|297570854|ref|YP_003696628.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931201|gb|ADH92009.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 747

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 277 IPRGVLLYGPPGTGKTLLAKAVAGEAGVPFFHISASEFVEM-FVGVGASR-VRDL 329


>gi|254574458|ref|XP_002494338.1| hypothetical protein [Pichia pastoris GS115]
 gi|238034137|emb|CAY72159.1| hypothetical protein PAS_chr4_0889 [Pichia pastoris GS115]
 gi|328353845|emb|CCA40242.1| Mitochondrial member of the AAA family of ATPases [Pichia pastoris
           CBS 7435]
          Length = 686

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   +++
Sbjct: 251 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRV 300


>gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
 gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
          Length = 750

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|261338170|ref|ZP_05966054.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
 gi|270276807|gb|EFA22661.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
          Length = 691

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 245 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDVFDEA 301


>gi|198282815|ref|YP_002219136.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666632|ref|YP_002425012.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247336|gb|ACH82929.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518845|gb|ACK79431.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 752

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           R+ +  L+R     I GQ+ A   ++ A++         A LR    P  + L  GPTGV
Sbjct: 445 RQALKNLERDLGFVIFGQEKAIHELSAAIKMAR------AGLRHHEKPVGSFLFSGPTGV 498

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GKT +SR+LA L G P ++ +++++ E   V R
Sbjct: 499 GKTELSRQLASLLGIPLLRFDMSEYMERHTVSR 531


>gi|153813584|ref|ZP_01966252.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174]
 gi|149830329|gb|EDM85421.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174]
          Length = 630

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 203 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 259


>gi|144898736|emb|CAM75600.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 764

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R +  +L   + GQ+ A  A+A A++         A LR+   P    L  GPTGVGKT 
Sbjct: 454 RTLERDLKTLVFGQEKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LAR+ G    + +++++ E            GYVG +   ++ D +D
Sbjct: 508 VARQLARIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558


>gi|145351544|ref|XP_001420133.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144580366|gb|ABO98426.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P  ++LVG  G GKT ++R +A  AG PFI +  ++F E+ YVG    ++
Sbjct: 222 PSGVMLVGAPGTGKTLLARAVAGEAGVPFISISASEFVEL-YVGMGAARV 270


>gi|78212968|ref|YP_381747.1| FtsH peptidase [Synechococcus sp. CC9605]
 gi|78197427|gb|ABB35192.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 215 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267


>gi|288818844|ref|YP_003433192.1| chaperone protein [Hydrogenobacter thermophilus TK-6]
 gi|288788244|dbj|BAI69991.1| chaperone protein [Hydrogenobacter thermophilus TK-6]
 gi|308752431|gb|ADO45914.1| ATPase AAA-2 domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +I Q+ A +AVA A+R R R     A L+D   P    L +GPTGVGKT +S+ L
Sbjct: 684 ELHRRVIDQEHAVKAVAEAIR-RAR-----AGLKDPKRPIATFLFLGPTGVGKTELSKAL 737

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A L        I++++++F E            GYVG
Sbjct: 738 AELLFGDEEALIRLDMSEFKEEHSVAKLIGAPPGYVG 774


>gi|269925293|ref|YP_003321916.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|310946768|sp|D1CDT8|FTSH_THET1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269788953|gb|ACZ41094.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 646

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK+ +A     L+N  + Q+L   +     PK +LL+GP G GKT ++R +A  
Sbjct: 199 VAGIEEAKQELAEIVDFLKNPQKYQRLGGTI-----PKGVLLIGPPGTGKTLLARAVAGE 253

Query: 77  AGAPFIKVEVTKFTEI 92
           AG PF  +  ++F E+
Sbjct: 254 AGVPFFSMSGSEFVEM 269


>gi|197294332|ref|YP_001798873.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853659|emb|CAM11538.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|118411141|ref|YP_874535.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|224015722|ref|XP_002297509.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
 gi|116739888|gb|ABK20758.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|220967773|gb|EED86149.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + +RDL   A
Sbjct: 215 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFQKA 271


>gi|126460853|ref|YP_001041967.1| ATPase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102517|gb|ABN75195.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 870

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642


>gi|163815350|ref|ZP_02206725.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759]
 gi|158449324|gb|EDP26319.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK ++      L N  R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 232 VAGEDEAKESLTEMVDFLHNPKRYLEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 286

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A  PF  +  + F E+ YVG    + +RDL   A ++ 
Sbjct: 287 ANVPFFSMSGSSFVEM-YVGVGASR-VRDLFKQAADMA 322


>gi|17232268|ref|NP_488816.1| cell division protein [Nostoc sp. PCC 7120]
 gi|81769738|sp|Q8YMZ8|FTSH_ANASP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|17133913|dbj|BAB76475.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 231 IPKGVLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 287


>gi|221640905|ref|YP_002527167.1| ATPase AAA-2 domain-containing protein [Rhodobacter sphaeroides
           KD131]
 gi|221161686|gb|ACM02666.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides KD131]
          Length = 870

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642


>gi|239916685|ref|YP_002956243.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|281414857|ref|ZP_06246599.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|239837892|gb|ACS29689.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
          Length = 696

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254


>gi|91215670|ref|ZP_01252640.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
 gi|91186136|gb|EAS72509.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 233 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 289


>gi|58039079|ref|YP_191043.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
 gi|58001493|gb|AAW60387.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
          Length = 771

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+A A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 456 RHLERDLRNMVFGQDKAIDALAAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 509

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 510 VAKQLANSLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 560


>gi|332559883|ref|ZP_08414205.1| ATPase [Rhodobacter sphaeroides WS8N]
 gi|332277595|gb|EGJ22910.1| ATPase [Rhodobacter sphaeroides WS8N]
          Length = 870

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642


>gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
 gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
          Length = 626

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + IRDL   A
Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 270


>gi|320159863|ref|YP_004173087.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Anaerolinea thermophila UNI-1]
 gi|319993716|dbj|BAJ62487.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Anaerolinea thermophila UNI-1]
          Length = 839

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++I+GQ +A  A+A A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 517 ELRKHIVGQDEAIDAIAKAVR-RAR-----AGLKDPRRPIGSFIFLGPTGVGKTELTKAL 570

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           AR    +    I++++++F E   V R V
Sbjct: 571 ARFMFGSEEALIQLDMSEFMERHTVSRLV 599


>gi|75908658|ref|YP_322954.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75702383|gb|ABA22059.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263


>gi|312144291|ref|YP_003995737.1| ATP-dependent metalloprotease FtsH [Halanaerobium sp.
           'sapolanicus']
 gi|311904942|gb|ADQ15383.1| ATP-dependent metalloprotease FtsH [Halanaerobium sp.
           'sapolanicus']
          Length = 634

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  QL A +     PK +L++GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 174 LKNPQKFSQLGATV-----PKGVLMIGPPGTGKTLMAKAVAGEAGTPFYFISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RDL +
Sbjct: 228 FVGVGASR-VRDLFE 241


>gi|289707001|ref|ZP_06503336.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
 gi|289556326|gb|EFD49682.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
          Length = 696

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254


>gi|156717542|ref|NP_001096311.1| fidgetin-like protein 1 [Xenopus (Silurana) tropicalis]
 gi|158513822|sp|A4IHT0|FIGL1_XENTR RecName: Full=Fidgetin-like protein 1
 gi|134024394|gb|AAI35672.1| LOC100124890 protein [Xenopus (Silurana) tropicalis]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 416 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFTVA 471


>gi|78184634|ref|YP_377069.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78168928|gb|ABB26025.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 218 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 270


>gi|33862651|ref|NP_894211.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313]
 gi|33634567|emb|CAE20553.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313]
          Length = 625

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|303238756|ref|ZP_07325288.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302593635|gb|EFL63351.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 617

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  +L GP G GKT +++ LA  AG PFI V  + F E  +VG    + IR L + A
Sbjct: 211 PKGTVLFGPPGTGKTLLAKALAGTAGVPFIAVSGSDFVE-KFVGVGASR-IRQLFEFA 266


>gi|255316594|ref|ZP_05358177.1| ATP-dependent metallopeptidase HflB [Clostridium difficile
           QCD-76w55]
          Length = 577

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++PK  +L GP G GKT I++ +A  AG PF  +  + F E+ YVG   ++ +R+L + A
Sbjct: 174 VLPKGAILYGPPGTGKTLIAKAVAGEAGVPFFSINGSDFIEL-YVGLGAKR-VRELFEEA 231


>gi|116070500|ref|ZP_01467769.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116065905|gb|EAU71662.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 218 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 270


>gi|37522218|ref|NP_925595.1| cell division protein FtsH-like protein [Gloeobacter violaceus PCC
           7421]
 gi|35213218|dbj|BAC90590.1| glr2649 [Gloeobacter violaceus PCC 7421]
          Length = 785

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104
           P+ +LLVGP G GKT I+R +A  AG PF  +    F    +G   + + QI R
Sbjct: 108 PRGVLLVGPPGTGKTMIARAIANEAGVPFYSLAAADFANMFLGVGSQRIRQIYR 161



 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104
           +P+  L VGP G GKT +++ +A  AG PF  +  + FTE  +G     V Q+ R
Sbjct: 368 VPRGFLFVGPPGTGKTLLAKAIANEAGVPFYALSGSDFTEVWVGLGASRVRQVYR 422


>gi|116195888|ref|XP_001223756.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51]
 gi|88180455|gb|EAQ87923.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51]
          Length = 414

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +AR +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 147 PSGVLLYGPPGCGKTMLAKAVARESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 202


>gi|307945083|ref|ZP_07660419.1| putative ATP-dependent hydrolase protein [Roseibium sp. TrichSKD4]
 gi|307770956|gb|EFO30181.1| putative ATP-dependent hydrolase protein [Roseibium sp. TrichSKD4]
          Length = 647

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           W+R++L     D    + +LLVG  G GKT  +R LA   GA F++  ++K   +G++G 
Sbjct: 233 WKRKKLSWGDVD----RGVLLVGKPGTGKTVYARALAETCGAHFVECSLSKMQGLGHLGD 288

Query: 98  NVEQIIR 104
            ++ I R
Sbjct: 289 MLKGIGR 295


>gi|317056315|ref|YP_004104782.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
 gi|315448584|gb|ADU22148.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
          Length = 663

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLLGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 260


>gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 638

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK   + +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 174 VAGQDEAKESLKEIIDYLNNASKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ +  + F E+ + G    + +RDL   A
Sbjct: 229 ANVPFLSISGSNFVEM-FAGMGAAK-VRDLFQEA 260


>gi|195572166|ref|XP_002104067.1| GD20762 [Drosophila simulans]
 gi|194199994|gb|EDX13570.1| GD20762 [Drosophila simulans]
          Length = 389

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 143 IQKQEVREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RDL  +A
Sbjct: 198 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225


>gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL+GP G GKT +++ +A  AG PF  +    F E+ +VG    + +RDL + A
Sbjct: 226 PKGVLLLGPPGTGKTLLAKAVAGEAGVPFFSMSGADFVEM-FVGVGASR-VRDLFEQA 281


>gi|159903848|ref|YP_001551192.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211]
 gi|159889024|gb|ABX09238.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211]
          Length = 619

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|124023616|ref|YP_001017923.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303]
 gi|123963902|gb|ABM78658.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303]
          Length = 625

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|116495971|ref|YP_807705.1| ATP-dependent Zn protease [Lactobacillus casei ATCC 334]
 gi|191639450|ref|YP_001988616.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239630370|ref|ZP_04673401.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067521|ref|YP_003789544.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|116106121|gb|ABJ71263.1| membrane protease FtsH catalytic subunit [Lactobacillus casei ATCC
           334]
 gi|190713752|emb|CAQ67758.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239526653|gb|EEQ65654.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439928|gb|ADK19694.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|327383542|gb|AEA55018.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei LC2W]
 gi|327386735|gb|AEA58209.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei BD-II]
          Length = 715

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277


>gi|90994519|ref|YP_537009.1| cell division protein [Porphyra yezoensis]
 gi|122225815|sp|Q1XDF9|FTSH_PORYE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|90819083|dbj|BAE92452.1| unnamed protein product [Porphyra yezoensis]
          Length = 628

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1]
 gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ+ AK+   +  R     ++       +  P+NIL  GP+G GKT +++ LA     
Sbjct: 125 VIGQELAKQKCRLIERFLEEPERF-----GKWAPRNILFFGPSGTGKTMLAKALANKTDV 179

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P I V+ T+   IG YVG    QI
Sbjct: 180 PLIPVKATQL--IGEYVGDGARQI 201


>gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ  AK+ +      L+N  R  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 191 VAGQAGAKQEIEEIVEFLKNPSRYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 245

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 246 AGVPFFSMSGSDFVEM-FVGVGASR-VRDL 273


>gi|283850915|ref|ZP_06368201.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
 gi|283573838|gb|EFC21812.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
          Length = 605

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK +LL+GP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 188 MPKGVLLIGPPGTGKTLLARAVAGEAQVPFFSISGSEFVEM-FVG 231


>gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
 gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|197294360|ref|YP_001798901.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853687|emb|CAM11570.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|94967095|ref|YP_589143.1| FtsH peptidase [Candidatus Koribacter versatilis Ellin345]
 gi|94549145|gb|ABF39069.1| membrane protease FtsH catalytic subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 637

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|33240430|ref|NP_875372.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237957|gb|AAQ00025.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 584

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A  A  PFI    ++F E+ +VG
Sbjct: 167 LPKGFLLVGPPGTGKTLLAKAIAGEANVPFISTTASEFVEL-FVG 210


>gi|299830367|ref|YP_003734582.1| cell division protein [Kryptoperidinium foliaceum]
 gi|297385069|gb|ADI40367.1| cell division protein [Kryptoperidinium foliaceum]
          Length = 627

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + IRDL   A
Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIANEASVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 272


>gi|294672833|ref|YP_003573449.1| ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23]
 gi|294473889|gb|ADE83278.1| putative ATP-dependent metalloprotease FtsH [Prevotella ruminicola
           23]
          Length = 673

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 217 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFQQA 273


>gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
 gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
          Length = 808

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|329122061|ref|ZP_08250669.1| cell division protein FtsH [Dialister micraerophilus DSM 19965]
 gi|327466868|gb|EGF12384.1| cell division protein FtsH [Dialister micraerophilus DSM 19965]
          Length = 613

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  +A     LRN  R   + A +     PK +LLVGP G GKT ++R +A  
Sbjct: 155 VAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVAGE 209

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 210 ARVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302]
 gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302]
          Length = 683

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 260 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFSQA 291


>gi|227533051|ref|ZP_03963100.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189452|gb|EEI69519.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 715

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277


>gi|94496140|ref|ZP_01302718.1| AAA ATPase, central region [Sphingomonas sp. SKA58]
 gi|94424319|gb|EAT09342.1| AAA ATPase, central region [Sphingomonas sp. SKA58]
          Length = 859

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ DA +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 565 GELGKRVIGQADAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 618

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA       +  +++++++F E   V R
Sbjct: 619 LASFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|31742536|ref|NP_071399.2| fidgetin-like protein 1 [Homo sapiens]
 gi|112789543|ref|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens]
 gi|158563967|sp|Q6PIW4|FIGL1_HUMAN RecName: Full=Fidgetin-like protein 1
 gi|30354010|gb|AAH51867.1| Fidgetin-like 1 [Homo sapiens]
 gi|41393465|gb|AAS01996.1| unknown [Homo sapiens]
 gi|51094648|gb|EAL23899.1| fidgetin-like 1 [Homo sapiens]
 gi|119581379|gb|EAW60975.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|119581380|gb|EAW60976.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|190690423|gb|ACE86986.1| fidgetin-like 1 protein [synthetic construct]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|332865235|ref|XP_001154105.2| PREDICTED: fidgetin-like 1 isoform 5 [Pan troglodytes]
 gi|332865237|ref|XP_003339446.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865239|ref|XP_003318482.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865241|ref|XP_003339447.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865243|ref|XP_003318484.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865245|ref|XP_527740.3| PREDICTED: fidgetin-like 1 isoform 6 [Pan troglodytes]
 gi|332865247|ref|XP_001153855.2| PREDICTED: fidgetin-like 1 isoform 2 [Pan troglodytes]
 gi|332865249|ref|XP_003339448.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865251|ref|XP_003318486.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865253|ref|XP_001153978.2| PREDICTED: fidgetin-like 1 isoform 3 [Pan troglodytes]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|229541281|ref|ZP_04430341.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
 gi|229325701|gb|EEN91376.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
          Length = 718

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A R VA A+R R R     A L+ +  P  + L VGPTGVGKT +++RLA
Sbjct: 427 LAKKVIGQEEAVRKVAKAIR-RSR-----AGLKAQSRPIGSFLFVGPTGVGKTELTKRLA 480

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G     I+++++++ E            GYVG
Sbjct: 481 EELFGTKDAMIRLDMSEYMEKHSVSKLIGAPAGYVG 516


>gi|114613355|ref|XP_001154038.1| PREDICTED: similar to Fidgetin-like 1 isoform 4 [Pan troglodytes]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|114328467|ref|YP_745624.1| clpB protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316641|gb|ABI62701.1| clpB protein [Granulibacter bethesdensis CGDNIH1]
          Length = 865

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+DA RAVA A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 568 ELRQRVVGQEDALRAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 621

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 622 AEFLFDDDRAMVRIDMSEFMEKHAVSR 648


>gi|148235265|ref|NP_001086763.1| fidgetin-like protein 1 [Xenopus laevis]
 gi|82235765|sp|Q6DDU8|FIGL1_XENLA RecName: Full=Fidgetin-like protein 1
 gi|50415868|gb|AAH77410.1| Fignl1-prov protein [Xenopus laevis]
          Length = 655

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 415 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFTVA 470


>gi|33240787|ref|NP_875729.1| cell division protein FtsH3 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238316|gb|AAQ00382.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 621

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258


>gi|313891687|ref|ZP_07825294.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E]
 gi|313119965|gb|EFR43150.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E]
          Length = 613

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  +A     LRN  R   + A +     PK +LLVGP G GKT ++R +A  
Sbjct: 155 VAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVAGE 209

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 210 ARVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|297288307|ref|XP_001083559.2| PREDICTED: fidgetin-like protein 1-like isoform 1 [Macaca mulatta]
 gi|297288309|ref|XP_002803318.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Macaca mulatta]
 gi|297288311|ref|XP_002803319.1| PREDICTED: fidgetin-like protein 1-like isoform 3 [Macaca mulatta]
 gi|297288313|ref|XP_002803320.1| PREDICTED: fidgetin-like protein 1-like isoform 4 [Macaca mulatta]
 gi|297288315|ref|XP_002803321.1| PREDICTED: fidgetin-like protein 1-like isoform 5 [Macaca mulatta]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
 gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
          Length = 853

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|162147426|ref|YP_001601887.1| chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786003|emb|CAP55585.1| Chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
          Length = 847

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R ++GQ+ A +AVA A+R R R     A L+D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELRRLVVGQEPALKAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELCKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++V +++F E   V R
Sbjct: 623 ARFLFDDEKALLRVNMSEFMEKHAVSR 649


>gi|315640558|ref|ZP_07895666.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
 gi|315483762|gb|EFU74250.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 235 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDTA 291


>gi|194476661|ref|YP_002048840.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora]
 gi|171191668|gb|ACB42630.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora]
          Length = 629

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 212 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 264


>gi|149704647|ref|XP_001498326.1| PREDICTED: fidgetin-like 1 [Equus caballus]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492


>gi|327399481|ref|YP_004340350.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
 gi|327182110|gb|AEA34291.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
          Length = 612

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVG  GVGKT  ++  A  AG PFI +  ++F E+ +VG    + +RDL + A
Sbjct: 197 PKGVLLVGVPGVGKTLFAKATAGEAGVPFISISGSEFIEM-FVGVGASR-VRDLFNEA 252


>gi|317479380|ref|ZP_07938514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
 gi|316904454|gb|EFV26274.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
          Length = 746

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558


>gi|315122873|ref|YP_004063362.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496275|gb|ADR52874.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 660

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P  +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A 
Sbjct: 192 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 249

Query: 112 N 112
           N
Sbjct: 250 N 250


>gi|310814544|ref|YP_003962508.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25]
 gi|308753279|gb|ADO41208.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25]
          Length = 870

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ++A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGRRVIGQREAVHAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEFLFDDDTAMVRIDMSEFMEKHSVAR 642


>gi|296209257|ref|XP_002751459.1| PREDICTED: fidgetin-like protein 1-like [Callithrix jacchus]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040222|gb|ACT57018.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P  +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A 
Sbjct: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237

Query: 112 N 112
           N
Sbjct: 238 N 238


>gi|254393823|ref|ZP_05008935.1| cell division protein [Streptomyces clavuligerus ATCC 27064]
 gi|197707422|gb|EDY53234.1| cell division protein [Streptomyces clavuligerus ATCC 27064]
          Length = 685

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP  +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 273 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 332

Query: 110 AINIV 114
           A  IV
Sbjct: 333 APAIV 337


>gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL
Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDL 288


>gi|10434929|dbj|BAB14426.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|270293656|ref|ZP_06199858.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275123|gb|EFA20983.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 746

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558


>gi|229551624|ref|ZP_04440349.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|258540709|ref|YP_003175208.1| cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
 gi|229315028|gb|EEN81001.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|257152385|emb|CAR91357.1| Cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
          Length = 716

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277


>gi|294815367|ref|ZP_06774010.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443720|ref|ZP_08218454.1| cell division protein FtsH-like protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327966|gb|EFG09609.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP  +LL GP G GKT ++R +A  AG PF     ++F E  +G     V ++  +   V
Sbjct: 265 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 324

Query: 110 AINIV 114
           A  IV
Sbjct: 325 APAIV 329


>gi|199598785|ref|ZP_03212197.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
 gi|199590290|gb|EDY98384.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
          Length = 716

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277


>gi|114776816|ref|ZP_01451859.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans
           PV-1]
 gi|114552902|gb|EAU55333.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans
           PV-1]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAIAGEAEVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|315320470|ref|YP_004072526.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
 gi|283568943|gb|ADB27480.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + +RDL   A
Sbjct: 215 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFQKA 271


>gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735]
 gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735]
          Length = 681

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 260 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFSQA 291


>gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44]
 gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|258509509|ref|YP_003172260.1| cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|257149436|emb|CAR88409.1| Cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|259650777|dbj|BAI42939.1| ATP-dependent Zn protease FtsH [Lactobacillus rhamnosus GG]
          Length = 716

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277


>gi|197294814|ref|YP_001799355.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171854141|emb|CAM12133.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 705

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL
Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDL 288


>gi|89069066|ref|ZP_01156447.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           granulosus HTCC2516]
 gi|89045435|gb|EAR51500.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           granulosus HTCC2516]
          Length = 776

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 463 KDLEGSLKRVVFGQDPAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++L+++ G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 517 VAKQLSQILGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 573


>gi|67541767|ref|XP_664651.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4]
 gi|40742503|gb|EAA61693.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4]
 gi|259483637|tpe|CBF79190.1| TPA: membrane-spanning ATPase, putative (AFU_orthologue;
           AFUA_4G03990) [Aspergillus nidulans FGSC A4]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 140 PSGVLLYGPPGCGKTMLAKALAHESGASFINLHISTLTEKWYGDSN------KLVNAVFS 193

Query: 113 IVRE 116
           + R+
Sbjct: 194 LARK 197


>gi|328949957|ref|YP_004367292.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450281|gb|AEB11182.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 630

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 186 IPRGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 242


>gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27]
 gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|193786555|dbj|BAG51338.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL   A
Sbjct: 235 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFIEL-FVGTGAAR-VRDLFKQA 291


>gi|148242853|ref|YP_001228010.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147851163|emb|CAK28657.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 626

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLVGPPGTGKTLLSKAVAGEADVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 260


>gi|77918833|ref|YP_356648.1| cell division protein [Pelobacter carbinolicus DSM 2380]
 gi|123743049|sp|Q3A579|FTSH_PELCD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|77544916|gb|ABA88478.1| cell division protein [Pelobacter carbinolicus DSM 2380]
          Length = 646

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 209 PRGVLLVGPPGTGKTLMARAVAGEAEVPFFTISASQFIEM-FVGVGASR-VRDLFNNA 264


>gi|313680777|ref|YP_004058516.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153492|gb|ADR37343.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 630

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PFI    + F E+ +VG    + +RDL + A
Sbjct: 188 IPRGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244


>gi|307822781|ref|ZP_07653012.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307736385|gb|EFO07231.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 20/108 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58
           K+T +FS           + G ++AK  VA     LR+  + Q+L   +     P+ IL+
Sbjct: 146 KMTVHFSD----------VAGCEEAKEEVAELVDFLRDPQKFQKLGGQI-----PRGILM 190

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           VGP G GKT I+R +A  AG  F  +  + F E+ +VG    + +RD+
Sbjct: 191 VGPPGTGKTLIARAIAGEAGVKFFTISGSDFVEM-FVGVGASR-VRDM 236


>gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
 gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ  AK+ V   + +  +  Q   DL  ++ PK  LLVGP G GKT +++ +A  AG 
Sbjct: 202 VAGQAGAKQEVQ-EIVDFLKNPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 259

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PF  +  + F E+ +VG    + +RDL
Sbjct: 260 PFFSMSGSDFVEM-FVGVGASR-VRDL 284


>gi|227509312|ref|ZP_03939361.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191242|gb|EEI71309.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 717

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279


>gi|169335541|ref|ZP_02862734.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258279|gb|EDS72245.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM
           17244]
          Length = 604

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 175 IPKGVLLVGPPGTGKTLLAKATAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 231


>gi|154252573|ref|YP_001413397.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans
           DS-1]
 gi|154156523|gb|ABS63740.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans
           DS-1]
          Length = 641

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|330443787|ref|YP_004376773.1| cell division protein FtsH [Chlamydophila pecorum E58]
 gi|328806897|gb|AEB41070.1| cell division protein FtsH [Chlamydophila pecorum E58]
          Length = 909

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ D A
Sbjct: 453 IPKGVLLIGPPGTGKTLIAKAVSGEANRPFFSIAGSDFVEM-FVGVGASR-IRDMFDQA 509


>gi|330790803|ref|XP_003283485.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
 gi|325086595|gb|EGC39982.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
          Length = 627

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++PK ILLVGP G GKT +++ LA  A   FI +  ++F E  +VG    + +RDL   A
Sbjct: 52  VIPKGILLVGPPGTGKTLLAKSLAGEAQVSFITINGSEFEE-AFVGVGARR-VRDLFQTA 109


>gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
 gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L+N  +  ++ A       P+  LLVGP G GKT +++ +A  
Sbjct: 183 VAGQDEAKESLQEIVSFLKNPDKYTEIGARC-----PRGALLVGPPGTGKTLLAKAVAGE 237

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F ++  ++F E+ +VGR   + +RDL   A
Sbjct: 238 AGVTFFQISGSEFVEM-FVGRGAAK-VRDLFKEA 269


>gi|254382002|ref|ZP_04997364.1| cell division protein [Streptomyces sp. Mg1]
 gi|194340909|gb|EDX21875.1| cell division protein [Streptomyces sp. Mg1]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           LRN  R Q+L A      MP  +LL G  G GKT ++R +A  AG PF     ++F E  
Sbjct: 217 LRNPQRYQRLGAR-----MPGGVLLAGAPGTGKTLLARAVAGEAGVPFFSASASEFIEMI 271

Query: 92  IGYVGRNVEQIIRDLVDVAINIV 114
           +G     V ++  +   VA  IV
Sbjct: 272 VGVGASRVRELFAEARKVAPAIV 294


>gi|153854579|ref|ZP_01995849.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
 gi|149752888|gb|EDM62819.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 171 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ YVG    + +RDL
Sbjct: 226 AKVPFFSLSGSAFVEM-YVGVGASR-VRDL 253


>gi|39939199|ref|NP_950965.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39722308|dbj|BAD04798.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 364

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ LA  AG PF  V  ++F E  YVG
Sbjct: 4  CIPKGVLLSGPPGTGKTLLAKALAGEAGVPFYAVSGSEFVE-RYVG 48


>gi|30468153|ref|NP_849040.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
 gi|14423723|sp|Q9TJ83|FTSH_CYAME RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=FtsHCP
 gi|6539506|dbj|BAA88165.1| FtsH (FtsHcp) [Cyanidioschyzon merolae]
 gi|30409253|dbj|BAC76202.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
          Length = 603

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDL 238


>gi|326435213|gb|EGD80783.1| 26S protease regulatory subunit [Salpingoeca sp. ATCC 50818]
          Length = 878

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +LVGP G GKT +++ +A  AG PF+ V  + F E+ +VG    + +RDL   A
Sbjct: 444 VPKGAMLVGPPGTGKTLLAKAVAGEAGVPFLAVSGSDFVEM-FVGVGPSR-VRDLFKQA 500


>gi|307296254|ref|ZP_07576081.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1]
 gi|306878056|gb|EFN09279.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1]
          Length = 860

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ DA +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 566 AELGKRVIGQADAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 619

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA       +  +++++++F E   V R
Sbjct: 620 LAGFLFDDDSAMVRIDMSEFMEKHSVAR 647


>gi|238019647|ref|ZP_04600073.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
 gi|237863688|gb|EEP64978.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|227522410|ref|ZP_03952459.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
 gi|227090468|gb|EEI25780.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
          Length = 717

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279


>gi|213404564|ref|XP_002173054.1| ATP-dependent metalloprotease YME1L1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001101|gb|EEB06761.1| ATP-dependent metalloprotease YME1L1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 730

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL GP G GKT ++R +A  AG PF  +  ++F E+ +VG   ++ +R+L   A
Sbjct: 321 LPRGILLTGPPGTGKTMLARAVAGEAGVPFFFMSGSQFDEM-FVGVGAKR-VRELFATA 377


>gi|189095436|ref|YP_001936449.1| cell division protein [Heterosigma akashiwo]
 gi|310943132|sp|B2XTF7|FTSH_HETA2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157694779|gb|ABV66055.1| ATP-dependent Zn protease; cell division protein FtsH homolog
           [Heterosigma akashiwo]
 gi|157778010|gb|ABV70196.1| ATP-dependent Zn protease [Heterosigma akashiwo]
          Length = 663

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PFI +  ++F E+ +VG    + +R+L + A
Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFINISGSEFVEM-FVGVGAAR-VRNLFEKA 292


>gi|197294205|ref|YP_001798746.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853532|emb|CAM11383.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 706

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|166031033|ref|ZP_02233862.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
 gi|166029300|gb|EDR48057.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
          Length = 616

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 173 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 227

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 228 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 259


>gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257


>gi|332251814|ref|XP_003275045.1| PREDICTED: fidgetin-like protein 1 isoform 1 [Nomascus leucogenys]
 gi|332251816|ref|XP_003275046.1| PREDICTED: fidgetin-like protein 1 isoform 2 [Nomascus leucogenys]
 gi|332251818|ref|XP_003275047.1| PREDICTED: fidgetin-like protein 1 isoform 3 [Nomascus leucogenys]
 gi|332251820|ref|XP_003275048.1| PREDICTED: fidgetin-like protein 1 isoform 4 [Nomascus leucogenys]
 gi|332251822|ref|XP_003275049.1| PREDICTED: fidgetin-like protein 1 isoform 5 [Nomascus leucogenys]
 gi|332251824|ref|XP_003275050.1| PREDICTED: fidgetin-like protein 1 isoform 6 [Nomascus leucogenys]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|329851349|ref|ZP_08266106.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis
           biprosthecum C19]
 gi|328840195|gb|EGF89767.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis
           biprosthecum C19]
          Length = 771

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R++ ++L R + GQ +A   ++ A++         A LRD   P    L  GPTGVGKT 
Sbjct: 459 RDMKTDLQRVVFGQDEAIEQLSTAIKLAR------AGLRDPQKPIGCYLFSGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++L+   G   ++ +++++ E            GY+G +   ++ D VD
Sbjct: 513 VAKQLSATMGIDLLRFDMSEYMERHTVSRLIGAPPGYIGHDQGGLLTDAVD 563


>gi|307822845|ref|ZP_07653076.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307736449|gb|EFO07295.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 650

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK +L+VGP G GKT ++R ++  A  PF  +  ++F E+ +VG    + +R+L + A 
Sbjct: 239 MPKGVLIVGPPGTGKTLLARAVSGEAQVPFFNISGSEFIEL-FVGVGAAR-VRELFEQAR 296

Query: 112 N 112
           N
Sbjct: 297 N 297


>gi|297680434|ref|XP_002817996.1| PREDICTED: fidgetin-like protein 1-like isoform 1 [Pongo abelii]
 gi|297680436|ref|XP_002817997.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Pongo abelii]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489


>gi|289577374|ref|YP_003476001.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9]
 gi|297543661|ref|YP_003675963.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527087|gb|ADD01439.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9]
 gi|296841436|gb|ADH59952.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  A+   + FI    ++F E+ Y G   ++ +R+L   A NI
Sbjct: 97  KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFKTAKNI 154

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167
            R+    E +  A I  +E  +D L  K  T+ +   + + L       DG  SD E++I
Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGVKRGTNESHHEYDQTLNQLLVEMDGIKSDGEVNI 208

Query: 168 EV 169
            V
Sbjct: 209 LV 210


>gi|219853875|ref|YP_002470997.1| hypothetical protein CKR_0532 [Clostridium kluyveri NBRC 12016]
 gi|219567599|dbj|BAH05583.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 617

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 175 VAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 230 AKVPFFSISGSAFVEM-FVGMGAAR-VRDLFQQA 261


>gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
 gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
          Length = 894

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFNQA 256


>gi|326475753|gb|EGD99762.1| ATPase family AAA domain-containing protein [Trichophyton tonsurans
           CBS 112818]
          Length = 415

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|294678496|ref|YP_003579111.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
 gi|294477316|gb|ADE86704.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
          Length = 773

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A   +A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 RDLEKTLKRVVFGQDKAIETLASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 514 VAKQLANTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570


>gi|289434265|ref|YP_003464137.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170509|emb|CBH27049.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KHLESNLSGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 785

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|227512324|ref|ZP_03942373.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
 gi|227084499|gb|EEI19811.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
          Length = 717

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279


>gi|198274399|ref|ZP_03206931.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
 gi|198272765|gb|EDY97034.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
          Length = 619

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK   + +   L N  +   + A L     PK  LLVGP G GKT I+R +A  
Sbjct: 179 VAGQNEAKEMLKEIVDFLHNPKKYTDIGASL-----PKGALLVGPPGTGKTLIARAVAGE 233

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  ++F ++ +VG    + +RDL
Sbjct: 234 AKVPFFAISGSEFVQM-FVGMGAAK-VRDL 261


>gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 628

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++
Sbjct: 209 VPRGVLLVGPPGCGKTLLARAVAGEAGVPFFSITGSDFMEM-FVGVGASRV 258


>gi|331091603|ref|ZP_08340437.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403360|gb|EGG82919.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQDEAKESLQEVVDFLHNPGKYTSIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 239 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 270


>gi|327274995|ref|XP_003222259.1| PREDICTED: fidgetin-like protein 1-like [Anolis carolinensis]
          Length = 688

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503


>gi|294084617|ref|YP_003551375.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664190|gb|ADE39291.1| ATPase with chaperone activity, ATP-binding subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 764

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 18/106 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT ++R+L
Sbjct: 453 DLKRLVFGQDAAISALSSAIKLSR------AGLREVEKPVGNYLFSGPTGVGKTEVARQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           A   G   I+ +++++ E            GYVG +   ++ D VD
Sbjct: 507 AEALGIKLIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVD 552


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 331 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 387


>gi|160888887|ref|ZP_02069890.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
 gi|156861786|gb|EDO55217.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
          Length = 746

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558


>gi|254495433|ref|ZP_05108357.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
 gi|85819788|gb|EAQ40945.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
          Length = 657

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 283


>gi|282892294|ref|ZP_06300690.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497885|gb|EFB40236.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 915

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ D A
Sbjct: 457 IPKGVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASR-IRDMFDQA 513


>gi|81300123|ref|YP_400331.1| FtsH-2 peptidase [Synechococcus elongatus PCC 7942]
 gi|81169004|gb|ABB57344.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus elongatus PCC 7942]
          Length = 623

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257


>gi|15805615|ref|NP_294311.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           radiodurans R1]
 gi|6458286|gb|AAF10168.1|AE001917_5 ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           radiodurans R1]
          Length = 741

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 18/106 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           ++L+R + GQ+ A  AV+ A++         A LR+   P+ + L  GPTGVGKT ++R 
Sbjct: 450 ADLNRRVYGQEPAVSAVSSAVKLAR------AGLRNPQKPQGSFLFAGPTGVGKTELARA 503

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           LA   G   I+ +++++ E            GYVG +   ++ D V
Sbjct: 504 LAERLGVELIRFDMSEYQEPHTVARLIGAPPGYVGFDQGGLLTDAV 549


>gi|116626116|ref|YP_828272.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229278|gb|ABJ87987.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 618

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 174 IPKGVLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM-FVGVGASR-VRDLFE 228


>gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFTQA 242


>gi|217967257|ref|YP_002352763.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
 gi|217336356|gb|ACK42149.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
          Length = 607

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 189 IPRGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFTQA 245


>gi|297563907|ref|YP_003682880.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848356|gb|ADH70374.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 836

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL R +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHRRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I++++++F E   V R
Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDALIQLDMSEFMEKHTVSR 589


>gi|295395582|ref|ZP_06805776.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971601|gb|EFG47482.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 870

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA ++V+ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRIIGQNDAIKSVSRAIR-RTR-----AGLKDPKRPSGSFI 546

Query: 58  LVGPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA  L G  +  I +++++F+E   V R
Sbjct: 547 FAGPTGVGKTELAKALAEFLFGDESALISLDMSEFSEKHTVSR 589


>gi|227823185|ref|YP_002827157.1| endopeptidase Clp ATP-binding chain B ClpB [Sinorhizobium fredii
           NGR234]
 gi|227342186|gb|ACP26404.1| endopeptidase Clp ATP-binding chain B ClpB [Sinorhizobium fredii
           NGR234]
          Length = 868

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++V+++++ E   V R
Sbjct: 621 ARFLFDDETALMRVDMSEYMEKHSVAR 647


>gi|78212463|ref|YP_381242.1| FtsH-2 peptidase [Synechococcus sp. CC9605]
 gi|78196922|gb|ABB34687.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 624

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258


>gi|21672930|ref|NP_660995.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
           tepidum TLS]
 gi|54035862|sp|Q8KG79|CLPB1_CHLTE RecName: Full=Probable chaperone protein ClpB 1
 gi|21645986|gb|AAM71337.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
           tepidum TLS]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I SEL R ++GQ +A RAV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IESELHRRVVGQDEAVRAVSDAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220


>gi|258405847|ref|YP_003198589.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
 gi|257798074|gb|ACV69011.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGGPGTGKTLLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
 gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
          Length = 622

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q++ A     + PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ 
Sbjct: 188 LHNPKKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 242 FVGMGASK-VRDLFKQA 257


>gi|78185050|ref|YP_377485.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169344|gb|ABB26441.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus sp. CC9902]
          Length = 629

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 207 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 263


>gi|11467496|ref|NP_043642.1| ORF 644 [Odontella sinensis]
 gi|1706925|sp|P49825|FTSH_ODOSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1185191|emb|CAA91674.1| ORF 644 [Odontella sinensis]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVGP G GKT +++ +A  A  PF  V  ++F E+ ++G    + +RDL   A
Sbjct: 218 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFKKA 274


>gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
 gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
          Length = 812

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
          Length = 818

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 333 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 389


>gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135]
 gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 175 VAGQEEAKQELREVVEFLKNPKKFEKIGARI-----PKGVLLVGSPGTGKTLLAKAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 230 AGVNFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 261


>gi|124003041|ref|ZP_01687892.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
 gi|123991691|gb|EAY31099.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
          Length = 696

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 239 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 295


>gi|326482686|gb|EGE06696.1| ATPase family AAA domain-containing protein 1-B [Trichophyton
           equinum CBS 127.97]
          Length = 415

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|301764501|ref|XP_002917669.1| PREDICTED: fidgetin-like protein 1-like [Ailuropoda melanoleuca]
 gi|281343445|gb|EFB19029.1| hypothetical protein PANDA_006009 [Ailuropoda melanoleuca]
          Length = 676

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 436 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 491


>gi|270047789|pdb|3KDS|E Chain E, Apo-Ftsh Crystal Structure
 gi|270047790|pdb|3KDS|F Chain F, Apo-Ftsh Crystal Structure
 gi|270047791|pdb|3KDS|G Chain G, Apo-Ftsh Crystal Structure
          Length = 465

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK ILLVGP G G T ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 48  MPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 100


>gi|224436695|ref|ZP_03657699.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG
           18818]
 gi|313143193|ref|ZP_07805386.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG
           18818]
 gi|313128224|gb|EFR45841.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG
           18818]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP GVGKT I++ +A  A  PF     + F +I Y G   +++
Sbjct: 194 LPKGVLLVGPPGVGKTMIAKAVAGEANVPFFYQSGSSFVQI-YAGMGAKRV 243


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 335 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 391


>gi|29829142|ref|NP_823776.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
 gi|29606248|dbj|BAC70311.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
           MA-4680]
          Length = 842

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +SR LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSRALAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|56750248|ref|YP_170949.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685207|dbj|BAD78429.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 261


>gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
 gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
          Length = 683

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  +  + F E+ +VG
Sbjct: 260 AGVPFFSMSGSDFVEM-FVG 278


>gi|283850416|ref|ZP_06367705.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. FW1012B]
 gi|283574442|gb|EFC22413.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. FW1012B]
          Length = 762

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71
            EL   I GQ +A  A++ A LR+R       A L +   P  + LL GPTGVGKT +++
Sbjct: 449 GELKGLIYGQDEAVEAISKAILRSR-------AGLANAGKPTGSFLLAGPTGVGKTEMAK 501

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGR 97
           +LA + G  F++ +++++ E   V R
Sbjct: 502 QLAAVLGINFVRFDMSEYMEKHAVAR 527


>gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
 gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
          Length = 751

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +R+L D A
Sbjct: 275 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 331


>gi|329123416|ref|ZP_08251980.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
 gi|327470998|gb|EGF16453.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
 gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
          Length = 651

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 192 IPKGILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGTGASR-VRDMFKTA 248


>gi|218437468|ref|YP_002375797.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218170196|gb|ACK68929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 655

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 235 IPKGVLLIGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 291


>gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257


>gi|222053541|ref|YP_002535903.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221562830|gb|ACM18802.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 586

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           M   ILLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG    + +RDL
Sbjct: 178 MLTGILLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-YVGVGSSR-VRDL 230


>gi|301170081|emb|CBW29685.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae 10810]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|297243774|ref|ZP_06927704.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
 gi|296888195|gb|EFH26937.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
          Length = 769

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +R+L D A
Sbjct: 259 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 315


>gi|302496375|ref|XP_003010189.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
 gi|291173730|gb|EFE29549.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
          Length = 426

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 157 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 202


>gi|260436446|ref|ZP_05790416.1| cell division protease FtsH [Synechococcus sp. WH 8109]
 gi|260414320|gb|EEX07616.1| cell division protease FtsH [Synechococcus sp. WH 8109]
          Length = 624

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258


>gi|145632765|ref|ZP_01788498.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
 gi|144986421|gb|EDJ92987.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|309973145|gb|ADO96346.1| ATP-dependent protease FtsH [Haemophilus influenzae R2846]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
 gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
          Length = 595

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ ++L GP G GKT ++R LA  AG PF  V  + F ++ YVG    +I
Sbjct: 187 IPRGVILYGPPGTGKTLLARALAGEAGVPFYAVSGSDFVQM-YVGVGAARI 236


>gi|317493620|ref|ZP_07952041.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918563|gb|EFV39901.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 648

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|282899436|ref|ZP_06307403.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281195700|gb|EFA70630.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 272


>gi|258541380|ref|YP_003186813.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632458|dbj|BAH98433.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635515|dbj|BAI01484.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638570|dbj|BAI04532.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641624|dbj|BAI07579.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644679|dbj|BAI10627.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647734|dbj|BAI13675.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650787|dbj|BAI16721.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653778|dbj|BAI19705.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 781

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 22/115 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           +E++  L+R     + GQ  A  A++ A++         A LRD   P  N L  GPTGV
Sbjct: 459 KEVLRSLERDLKGMVFGQDQAIDALSAAIKLAR------AGLRDAEKPIGNYLFSGPTGV 512

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GKT ++R+LA   G   ++ +++++ E            GYVG +   ++ D +D
Sbjct: 513 GKTEVARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAID 567


>gi|255325836|ref|ZP_05366928.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297048|gb|EET76373.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 785

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
 gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
          Length = 745

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 341 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 397


>gi|197103300|ref|YP_002128678.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
 gi|196480576|gb|ACG80103.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  AG  F  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVKFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 253


>gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis]
 gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis]
          Length = 744

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 340 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 396


>gi|148826966|ref|YP_001291719.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
 gi|148718208|gb|ABQ99335.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 332 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 388


>gi|16273245|ref|NP_439486.1| cell division protein [Haemophilus influenzae Rd KW20]
 gi|2492507|sp|P71377|FTSH_HAEIN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1574793|gb|AAC22979.1| cell division protein (ftsH) [Haemophilus influenzae Rd KW20]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|88703372|ref|ZP_01101088.1| ATP-dependent clp protease, ATP-binding subunit ClpA
           [Congregibacter litoralis KT71]
 gi|88702086|gb|EAQ99189.1| ATP-dependent clp protease, ATP-binding subunit ClpA
           [Congregibacter litoralis KT71]
          Length = 765

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S L   + GQ DA  +++ +++         A LR    P  + LL GPTGVGKT ++R+
Sbjct: 458 SNLKMVVFGQDDAVSSLSTSIK------MARAGLRGGDKPIGSFLLAGPTGVGKTEVTRQ 511

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA++ G   I+ +++++ E   V R
Sbjct: 512 LAKILGLELIRFDMSEYMERHTVSR 536


>gi|331701915|ref|YP_004398874.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129258|gb|AEB73811.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
          Length = 711

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 222 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 278


>gi|325282894|ref|YP_004255435.1| ATPase AAA-2 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324314703|gb|ADY25818.1| ATPase AAA-2 domain protein [Deinococcus proteolyticus MRP]
          Length = 755

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRR 72
           S+L   + GQ  A  AVA A++         A LRD   P+ + L  GPTGVGKT ++R 
Sbjct: 455 SDLAARVFGQDKAVEAVASAVKLAR------AGLRDPQKPQGMFLFAGPTGVGKTELARA 508

Query: 73  LARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           LA   G   I+ +++++ E            GYVG +   ++ D V
Sbjct: 509 LADRLGVELIRFDMSEYGEAHTVARLIGAPPGYVGFDQGGLLTDAV 554


>gi|291546955|emb|CBL20063.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5]
          Length = 712

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 242 AQVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273


>gi|302666472|ref|XP_003024835.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
 gi|291188908|gb|EFE44224.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200

Query: 113 IVRE 116
           + R+
Sbjct: 201 LARK 204


>gi|261494532|ref|ZP_05991017.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309825|gb|EEY11043.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEARVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 243


>gi|229844056|ref|ZP_04464197.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
 gi|229813050|gb|EEP48738.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|210615344|ref|ZP_03290508.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
 gi|210150371|gb|EEA81380.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 202 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 256

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 257 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 288


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 247 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 303


>gi|116072384|ref|ZP_01469651.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116064906|gb|EAU70665.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 624

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +S+ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258


>gi|15614742|ref|NP_243045.1| ATP-dependent proteinase [Bacillus halodurans C-125]
 gi|10174798|dbj|BAB05898.1| ATP-dependent proteinase [Bacillus halodurans C-125]
          Length = 711

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 20/103 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R +IGQ +A   VA A++ R R     A L+ +  P + + VGPTGVGKT +
Sbjct: 414 KDLHNRLARQVIGQAEAVEKVAKAIK-RSR-----AGLKPKNRPISFMFVGPTGVGKTEL 467

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGRN 98
           ++ LA+ L G+    I++++++F E            GYVG +
Sbjct: 468 TKTLAQELFGSKEAMIRLDMSEFMEKHSVSKLIGSPPGYVGHD 510


>gi|68250004|ref|YP_249116.1| cell division protein FtsH-like protein [Haemophilus influenzae
           86-028NP]
 gi|145630773|ref|ZP_01786551.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145634956|ref|ZP_01790663.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145638915|ref|ZP_01794523.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|68058203|gb|AAX88456.1| cell division protein FtsH homolog 1 [Haemophilus influenzae
           86-028NP]
 gi|144983655|gb|EDJ91115.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145267822|gb|EDK07819.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145271887|gb|EDK11796.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|309750888|gb|ADO80872.1| ATP-dependent protease FtsH [Haemophilus influenzae R2866]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 336 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 392


>gi|319442402|ref|ZP_07991558.1| cell division protein [Corynebacterium variabile DSM 44702]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 VPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFKTA 255


>gi|319897096|ref|YP_004135291.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
 gi|317432600|emb|CBY80961.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|313638539|gb|EFS03696.1| negative regulator of genetic competence ClpC/MecB [Listeria
           seeligeri FSL S4-171]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KHLESNLSGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 472 LGRTLARELFGTIEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514


>gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
 gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 12/82 (14%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A L D+  P  ++L VGPTGVGKT ++R+LA+  G   ++ +++++TE            
Sbjct: 495 AGLTDDDKPLASLLFVGPTGVGKTEVARQLAKELGIELVRFDMSEYTEKHTVAKLIGSPA 554

Query: 93  GYVGRNVEQIIRDLVDVAINIV 114
           GYVG     ++ D +    N V
Sbjct: 555 GYVGYEDGGLLTDAIRKTPNCV 576


>gi|254362181|ref|ZP_04978297.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213]
 gi|261492458|ref|ZP_05989013.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|153093750|gb|EDN74693.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213]
 gi|261311874|gb|EEY13022.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEARVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 243


>gi|145629420|ref|ZP_01785218.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
 gi|144978263|gb|EDJ88027.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A]
 gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ+ AK+   +  R     ++       +  P+NIL  GP+G GKT +++ LA     
Sbjct: 125 VIGQELAKQKCRLIERFLEEPERF-----GKWAPRNILFFGPSGTGKTMLAKALANKTDV 179

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P I V+ T+   IG YVG    QI
Sbjct: 180 PIIPVKATQL--IGEYVGDGARQI 201


>gi|283783577|ref|YP_003374331.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|298252656|ref|ZP_06976450.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
 gi|283441441|gb|ADB13907.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|297533020|gb|EFH71904.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
          Length = 769

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +R+L D A
Sbjct: 259 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 315


>gi|319776274|ref|YP_004138762.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
 gi|317450865|emb|CBY87089.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|315039979|ref|XP_003169367.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
           gypseum CBS 118893]
 gi|311346057|gb|EFR05260.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
           gypseum CBS 118893]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200

Query: 113 IVRE 116
           + R+
Sbjct: 201 LARK 204


>gi|312082078|ref|XP_003143295.1| hypothetical protein LOAG_07714 [Loa loa]
 gi|307761541|gb|EFO20775.1| hypothetical protein LOAG_07714 [Loa loa]
          Length = 753

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG----RNVEQIIRDL 106
           +PK  LL GP G GKT +++ LA  +  PFI +  T+F E IG +G    RN+ +  + +
Sbjct: 319 LPKGALLTGPPGCGKTFLAKALATESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKM 378

Query: 107 VDVAINI 113
               I I
Sbjct: 379 APCIIYI 385


>gi|291410705|ref|XP_002721627.1| PREDICTED: fidgetin-like 1 [Oryctolagus cuniculus]
          Length = 677

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492


>gi|296138309|ref|YP_003645552.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296026443|gb|ADG77213.1| ATPase AAA-2 domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 855

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 28/187 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 517 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 570

Query: 74  AR-LAGA--PFIKVEVTKFTE-----------IGYVGRN-----VEQIIRDLVDVAINIV 114
           A  L G     I++++ +F +            GYVG        E++ R    V +   
Sbjct: 571 ANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDE 630

Query: 115 RESRRDEVREQASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTS 173
            E    E+        E+  L    G+T    NT  +F   L  G+IS K + +      
Sbjct: 631 IEKAHSEIYNTLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTGDIS-KAVGLGFTQGD 689

Query: 174 SDISNFD 180
           SD +N+D
Sbjct: 690 SDGANYD 696


>gi|224438185|ref|ZP_03659120.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313144630|ref|ZP_07806823.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313129661|gb|EFR47278.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
          Length = 631

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL ++A
Sbjct: 203 IPRGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 259


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF      +F E+  VG+   + +RDL   A
Sbjct: 336 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 392


>gi|149178953|ref|ZP_01857530.1| cell division protein FtsH [Planctomyces maris DSM 8797]
 gi|148842227|gb|EDL56613.1| cell division protein FtsH [Planctomyces maris DSM 8797]
          Length = 685

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 232 IPKGVLLVGPPGTGKTMLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDMFQQA 288


>gi|83945503|ref|ZP_00957850.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851079|gb|EAP88937.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis
           alexandrii HTCC2633]
          Length = 777

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 22/113 (19%)

Query: 10  REIVSELDRYIIGQQDA--KRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           R++ + L R + GQ DA  K A AI L          A LR+   P  + L  GPTGVGK
Sbjct: 457 RDLENSLKRVVFGQDDAIEKLASAIKLAR--------AGLREPNKPIGSYLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           T ++R+LA   G   ++ +++++ E            GYVG +    + D +D
Sbjct: 509 TEVARQLADTLGVELLRFDMSEYMERHTVSRLLGAPPGYVGYDQGGQLTDAID 561


>gi|307153166|ref|YP_003888550.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983394|gb|ADN15275.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 639

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 219 IPKGVLLIGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 275


>gi|148826496|ref|YP_001291249.1| ATP-dependent chaperone ClpB [Haemophilus influenzae PittEE]
 gi|229845911|ref|ZP_04466023.1| ClpB [Haemophilus influenzae 7P49H1]
 gi|148716656|gb|ABQ98866.1| ClpB [Haemophilus influenzae PittEE]
 gi|229810915|gb|EEP46632.1| ClpB [Haemophilus influenzae 7P49H1]
          Length = 856

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPISSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|145636178|ref|ZP_01791848.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
 gi|145270700|gb|EDK10633.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
          Length = 550

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 98  IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 154


>gi|52425019|ref|YP_088156.1| HflB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307071|gb|AAU37571.1| HflB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGILMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|224367621|ref|YP_002601784.1| FtsH [Desulfobacterium autotrophicum HRM2]
 gi|223690337|gb|ACN13620.1| FtsH [Desulfobacterium autotrophicum HRM2]
          Length = 670

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT +SR +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 187 IPKGVLLVGAPGTGKTLLSRAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDL 239


>gi|215408553|emb|CAR31126.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 162

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 56  IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 114

Query: 112 N 112
           N
Sbjct: 115 N 115


>gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +QD + AV   L  R R + L  +      PK +LL GP G GKT I++ +A  +GA F+
Sbjct: 466 KQDIREAVEYPLTERERFENLGIE-----PPKGVLLYGPPGTGKTLIAKAVASESGANFV 520

Query: 83  KVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
            V+  +     +G   R V +I +    VA +I+
Sbjct: 521 PVKGPQLLSKWVGESERAVREIFKKARQVAPSII 554



 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT I++ +A  +GA FI +
Sbjct: 218 PKGVLLYGPPGTGKTLIAKAVASESGAHFISI 249


>gi|152979124|ref|YP_001344753.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes
           130Z]
 gi|150840847|gb|ABR74818.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes
           130Z]
          Length = 650

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGILMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|326917214|ref|XP_003204896.1| PREDICTED: fidgetin-like protein 1-like [Meleagris gallopavo]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503


>gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+GQ++AK+   I ++          +L  +  PKN+L  GP G GKT ++R LA    +
Sbjct: 126 IVGQEEAKKKCRIIMKYLED-----PELFGDWAPKNVLFYGPPGTGKTLMARALATETNS 180

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110
            FI V+  +   IG +VG +  ++IR+L   A
Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQKA 209


>gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 261


>gi|118086623|ref|XP_001234039.1| PREDICTED: fidgetin-like 1 [Gallus gallus]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503


>gi|70982115|ref|XP_746586.1| membrane-spanning ATPase [Aspergillus fumigatus Af293]
 gi|66844209|gb|EAL84548.1| membrane-spanning ATPase, putative [Aspergillus fumigatus Af293]
 gi|159122179|gb|EDP47301.1| membrane-spanning ATPase, putative [Aspergillus fumigatus A1163]
          Length = 419

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|327298125|ref|XP_003233756.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
           CBS 118892]
 gi|326463934|gb|EGD89387.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
           CBS 118892]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200

Query: 113 IVRE 116
           + R+
Sbjct: 201 LARK 204


>gi|237749838|ref|ZP_04580318.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
 gi|229374588|gb|EEO24979.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEKA 262


>gi|329666678|gb|AEB92626.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           DPC 6026]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|260581319|ref|ZP_05849135.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
 gi|260091986|gb|EEW75933.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
          Length = 336

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|256848388|ref|ZP_05553831.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714986|gb|EEU29964.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 224 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 280


>gi|227888867|ref|ZP_04006672.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
 gi|227850704|gb|EEJ60790.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|148242588|ref|YP_001227745.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147850898|emb|CAK28392.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 220 IPRGVLLVGPPGTGKTLLARAIAGEAEVPFFTLSASEFVEM-FVGVGASR-VRDL 272


>gi|32266321|ref|NP_860353.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
 gi|32262371|gb|AAP77419.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
          Length = 611

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL ++A
Sbjct: 182 IPRGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 238


>gi|294791953|ref|ZP_06757101.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           6_1_27]
 gi|294457183|gb|EFG25545.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           6_1_27]
          Length = 815

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|296818593|ref|XP_002849633.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
           CBS 113480]
 gi|238840086|gb|EEQ29748.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
           CBS 113480]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200

Query: 113 IVRE 116
           + R+
Sbjct: 201 LARK 204


>gi|269798082|ref|YP_003311982.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|269094711|gb|ACZ24702.1| ATPase AAA-2 domain protein [Veillonella parvula DSM 2008]
          Length = 815

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|42518369|ref|NP_964299.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
 gi|41582654|gb|AAS08265.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002]
 gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19]
          Length = 667

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L +  R +QL A +     P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 182 LEDPSRYEQLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 236 FVGVGASR-VRDL 247


>gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17]
 gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17]
          Length = 690

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 277


>gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
          Length = 673

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ  AK+ V      L+N  R   L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 202 VAGQAGAKQEVQEIVDFLKNPHRYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 256

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           AG PF  +  + F E+ +VG    + +RDL
Sbjct: 257 AGVPFFSMSGSDFVEM-FVGVGASR-VRDL 284


>gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
          Length = 974

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|206901548|ref|YP_002250585.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
 gi|206740651|gb|ACI19709.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
          Length = 607

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 189 IPRGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFTQA 245


>gi|170062572|ref|XP_001866728.1| aaa atpase [Culex quinquefasciatus]
 gi|167880462|gb|EDS43845.1| aaa atpase [Culex quinquefasciatus]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  AR AG  FI ++V   T+  Y
Sbjct: 127 PKGVLLYGPPGCGKTLIAKATAREAGMRFINLDVAMLTDKWY 168


>gi|146338276|ref|YP_001203324.1| cell division protein FtsH [Bradyrhizobium sp. ORS278]
 gi|146191082|emb|CAL75087.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [Bradyrhizobium sp. ORS278]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 205 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 261


>gi|37523858|ref|NP_927235.1| hypothetical protein glr4289 [Gloeobacter violaceus PCC 7421]
 gi|35214864|dbj|BAC92230.1| glr4289 [Gloeobacter violaceus PCC 7421]
          Length = 504

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 15/101 (14%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           ++EL R++  + DA          R R+  LP        PK +L++G  G GK+ I++ 
Sbjct: 235 LAELKRWLTQRSDA-------FTERARQYGLP-------QPKGMLILGVPGCGKSLIAKT 280

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ARL G P +++++ +  +   VGR+ E  +R+ + VA +I
Sbjct: 281 TARLWGLPLLRLDIGRVYDGSMVGRS-EANLRNALRVAESI 320


>gi|282897599|ref|ZP_06305599.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197522|gb|EFA72418.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 272


>gi|268318838|ref|YP_003292494.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
 gi|262397213|emb|CAX66227.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|254294755|ref|YP_003060778.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814]
 gi|254043286|gb|ACT60081.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPKGALLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|188589992|ref|YP_001919612.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780453|ref|ZP_04823373.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500273|gb|ACD53409.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084768|gb|EES50658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 601

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVG 234


>gi|73981824|ref|XP_540351.2| PREDICTED: similar to fidgetin-like 1 [Canis familiaris]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 449 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 504


>gi|37522828|ref|NP_926205.1| hypothetical protein gll3259 [Gloeobacter violaceus PCC 7421]
 gi|35213830|dbj|BAC91200.1| gll3259 [Gloeobacter violaceus PCC 7421]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 15/101 (14%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           ++EL R++  + DA          R R+  LP        PK +L++G  G GK+ I++ 
Sbjct: 238 LAELKRWLTQRSDA-------FTERARQYGLP-------QPKGLLILGVPGCGKSLIAKT 283

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ARL G P +++++ +  +   VGR+ E  +R+ + VA +I
Sbjct: 284 TARLWGLPLLRLDIGRVYDGSMVGRS-EANLRNALRVAESI 323


>gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
 gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
          Length = 690

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 277


>gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14]
 gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14]
          Length = 695

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 232 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 284


>gi|300114321|ref|YP_003760896.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299540258|gb|ADJ28575.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LL GP G GKT ++R +A  A  PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 206 MPKGVLLAGPPGTGKTLLARAIAGEARVPFFNISGSEFIEL-FVGVGAAR-ARDLFEQA 262


>gi|299117317|emb|CBN75277.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 418

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP+G GKT ++R +A  A  PF     + F E+  VGR   + +RDL
Sbjct: 224 LPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEM-LVGRGAAR-VRDL 276


>gi|282850309|ref|ZP_06259688.1| negative regulator of genetic competence ClpC/MecB [Veillonella
           parvula ATCC 17745]
 gi|282579802|gb|EFB85206.1| negative regulator of genetic competence ClpC/MecB [Veillonella
           parvula ATCC 17745]
          Length = 815

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|229847494|ref|ZP_04467591.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
 gi|229809635|gb|EEP45362.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
          Length = 480

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|300362402|ref|ZP_07058578.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
 gi|300353393|gb|EFJ69265.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|303272557|ref|XP_003055640.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463614|gb|EEH60892.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 391

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           ++P  +LL GP G GKT ++R LA  A  PF  V  T+F E+ +VG    +I
Sbjct: 42  VIPAGVLLCGPPGTGKTLLARCLAGEANVPFFAVAGTEFMEM-FVGVGAARI 92


>gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 977

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255


>gi|83645152|ref|YP_433587.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83633195|gb|ABC29162.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 759

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           R +   L   + GQ  A  A+  A++         A L+ E  P+ + L  GPTGVGKT 
Sbjct: 452 RNLQRNLKMVVFGQDPAIEALVTAIKLSR------AGLKSEGKPEGSFLFAGPTGVGKTE 505

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA++ G   ++ +++++ E   V R
Sbjct: 506 VTRQLAKILGVELVRFDMSEYMERHTVSR 534


>gi|50545691|ref|XP_500384.1| YALI0B01386p [Yarrowia lipolytica]
 gi|49646250|emb|CAG82601.1| YALI0B01386p [Yarrowia lipolytica]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF  V  ++F E+ YVG   ++ +R+L + A
Sbjct: 258 LPKGVLLTGPPGTGKTLLARAVAGEADVPFYFVSGSEFDEM-YVGVGAKR-VRELFEKA 314


>gi|85108906|ref|XP_962658.1| ATPase family AAA domain-containing protein 1 [Neurospora crassa
           OR74A]
 gi|28924269|gb|EAA33422.1| ATPase family AAA domain-containing protein 1 [Neurospora crassa
           OR74A]
          Length = 414

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +++R +  +A+ 
Sbjct: 153 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLALK 210

Query: 113 I 113
           +
Sbjct: 211 L 211


>gi|317010654|gb|ADU84401.1| cell division protein [Helicobacter pylori SouthAfrica7]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|294793817|ref|ZP_06758954.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           3_1_44]
 gi|294455387|gb|EFG23759.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           3_1_44]
          Length = 815

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558

Query: 74  A-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           A  L G  +  I+++++++ E   V R V
Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|296121876|ref|YP_003629654.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296014216|gb|ADG67455.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 650

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R  A  AG PF  +  ++F ++ +VG    + +RDL
Sbjct: 229 IPKGVLLMGPPGTGKTLLARATAGEAGVPFYSINGSEFIQM-FVGVGASR-VRDL 281


>gi|303244707|ref|ZP_07331038.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302484921|gb|EFL47854.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG-YVGRNVEQIIR 104
           +L  E  PKNIL  GP G GKT ++R LA     P   ++ T+   IG +VG   +Q I+
Sbjct: 148 ELFGEWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATEL--IGEHVGDGSKQ-IQ 204

Query: 105 DLVDVAIN 112
           DL + A+N
Sbjct: 205 DLYNKALN 212


>gi|302838875|ref|XP_002950995.1| hypothetical protein VOLCADRAFT_35780 [Volvox carteri f.
           nagariensis]
 gi|300263690|gb|EFJ47889.1| hypothetical protein VOLCADRAFT_35780 [Volvox carteri f.
           nagariensis]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LLVGP G GKT ++R +A  +G  FI     +F E+ Y+G    + +RDL + A +
Sbjct: 37  PKGVLLVGPPGNGKTLMARAVAGESGVAFISSSAAEFIEM-YMGLGAAR-VRDLFNTARS 94

Query: 113 IV 114
           + 
Sbjct: 95  VA 96


>gi|297288317|ref|XP_002803322.1| PREDICTED: fidgetin-like protein 1-like isoform 6 [Macaca mulatta]
 gi|297288319|ref|XP_002803323.1| PREDICTED: fidgetin-like protein 1-like isoform 7 [Macaca mulatta]
          Length = 563

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378


>gi|187935018|ref|YP_001884419.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723171|gb|ACD24392.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B str.
           Eklund 17B]
          Length = 601

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG
Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVG 234


>gi|188584568|ref|YP_001928013.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001]
 gi|179348066|gb|ACB83478.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 437

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF     T+F E+ +VG    + IR+L D A
Sbjct: 94  IPAGVLLCGPPGTGKTLLARCVAGEANVPFFSCAGTEFMEM-FVGVGAAR-IRNLFDQA 150


>gi|154253239|ref|YP_001414063.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum
           lavamentivorans DS-1]
 gi|154157189|gb|ABS64406.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum
           lavamentivorans DS-1]
          Length = 794

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           +++ +EL R + GQ  A  A+A +++         A LR+   P    L  GPTGVGKT 
Sbjct: 458 KDLDTELKRVVFGQNAAIDALAASIKLAR------AGLREAEKPIGCYLFSGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LA + G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 512 VARQLASVLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 562


>gi|116628950|ref|YP_814122.1| ATP-dependent Zn protease [Lactobacillus gasseri ATCC 33323]
 gi|238853549|ref|ZP_04643921.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282852628|ref|ZP_06261970.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
 gi|116094532|gb|ABJ59684.1| membrane protease FtsH catalytic subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238833845|gb|EEQ26110.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282556370|gb|EFB61990.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280


>gi|153952359|ref|YP_001397772.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939805|gb|ABS44546.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|71031686|ref|XP_765485.1| AAA family ATPase [Theileria parva strain Muguga]
 gi|68352441|gb|EAN33202.1| AAA family ATPase, putative [Theileria parva]
          Length = 637

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           PK ILL GP G GKT I++ +A ++ A F ++  +  T   Y G + E II+ L  VA+
Sbjct: 384 PKGILLFGPPGTGKTTIAKWIANVSNATFFEISPSSITSKFY-GES-ESIIKTLFKVAL 440


>gi|289618354|emb|CBI55078.1| unnamed protein product [Sordaria macrospora]
          Length = 414

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +++R +  +A+ 
Sbjct: 153 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLALK 210

Query: 113 I 113
           +
Sbjct: 211 L 211


>gi|295836295|ref|ZP_06823228.1| cell division protein FtsH [Streptomyces sp. SPB74]
 gi|197697339|gb|EDY44272.1| cell division protein FtsH [Streptomyces sp. SPB74]
          Length = 651

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 241 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 300

Query: 110 AINIV 114
           A +IV
Sbjct: 301 APSIV 305


>gi|158340876|ref|YP_001522044.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|310943110|sp|A8ZNZ4|FTSH_ACAM1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158311117|gb|ABW32730.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 655

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 208 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSEFIEL-FVGIGAAR-VRDLFEQA 264


>gi|109947710|ref|YP_664938.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714931|emb|CAJ99939.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str.
           Sheeba]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 261


>gi|92118966|ref|YP_578695.1| ATP-dependent metalloprotease FtsH [Nitrobacter hamburgensis X14]
 gi|91801860|gb|ABE64235.1| membrane protease FtsH catalytic subunit [Nitrobacter hamburgensis
           X14]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|323450958|gb|EGB06837.1| hypothetical protein AURANDRAFT_59175 [Aureococcus anophagefferens]
          Length = 479

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GKT ++R +A  AG PFI    ++F E+ +VG    +I     D   N
Sbjct: 64  PRGVLLEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGVGASRIRSLFADAKKN 122


>gi|320591014|gb|EFX03453.1| ATPase family aaa domain containing protein [Grosmannia clavigera
           kw1407]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 140 PSGVLLYGPPGCGKTMLAKALAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 195


>gi|208434325|ref|YP_002265991.1| cell division protein [Helicobacter pylori G27]
 gi|208432254|gb|ACI27125.1| cell division protein [Helicobacter pylori G27]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 255 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 311


>gi|2199518|gb|AAB66377.1| FtsH [Helicobacter pylori]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411]
 gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411]
          Length = 796

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFKQA 256


>gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA     PF  V  ++F E+ YVG    + IRDL   A
Sbjct: 212 IPKGVLLEGPPGTGKTLLAKALANEVKIPFYAVSGSEFVEV-YVGVGASR-IRDLFQKA 268


>gi|329113826|ref|ZP_08242597.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
 gi|326696836|gb|EGE48506.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|294494877|ref|YP_003541370.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292665876|gb|ADE35725.1| AAA ATPase central domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +LLVGP G GKT+++R L+ +   PF++V+++  T+  +G   +N++++ 
Sbjct: 211 VLLVGPPGTGKTSVARALSEMLSIPFVEVKLSMITDQYLGETAKNIDRVF 260


>gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
 gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
          Length = 796

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFKQA 256


>gi|298527838|ref|ZP_07015242.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511490|gb|EFI35392.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|145641634|ref|ZP_01797211.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145273681|gb|EDK13550.1| RNA polymerase sigma factor [Haemophilus influenzae 22.4-21]
          Length = 416

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|21740068|emb|CAD39050.1| hypothetical protein [Homo sapiens]
          Length = 563

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378


>gi|21672968|ref|NP_661033.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646027|gb|AAM71375.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 706

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDLFKSA 285


>gi|148258082|ref|YP_001242667.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146410255|gb|ABQ38761.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|46110102|ref|XP_382109.1| hypothetical protein FG01933.1 [Gibberella zeae PH-1]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +I+R +  +A
Sbjct: 147 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KIVRAVFSLA 202


>gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis]
          Length = 694

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LLVGP G GKT ++R +A  A  PF  +  ++F E+ YVG    + +R+L   A
Sbjct: 183 PSGVLLVGPPGTGKTLLARAVAGEADVPFFSIAASEFVEL-YVGMGAMR-VRELFATA 238


>gi|270290205|ref|ZP_06196431.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304385526|ref|ZP_07367870.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
 gi|270281742|gb|EFA27574.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304328030|gb|EFL95252.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
          Length = 694

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 276


>gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 910

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 205 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFTQA 261


>gi|217031605|ref|ZP_03437110.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128]
 gi|216946805|gb|EEC25401.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128]
          Length = 603

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 173 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 229


>gi|254455364|ref|ZP_05068793.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082366|gb|EDZ59792.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
          Length = 614

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ +
Sbjct: 166 IPRGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFE 220


>gi|167761264|ref|ZP_02433391.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
 gi|167660930|gb|EDS05060.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
          Length = 648

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 174 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 229 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 260


>gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R]
 gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 853

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 253


>gi|116493273|ref|YP_805008.1| FtsH-2 peptidase [Pediococcus pentosaceus ATCC 25745]
 gi|116103423|gb|ABJ68566.1| membrane protease FtsH catalytic subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 693

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 276


>gi|115387825|ref|XP_001211418.1| ATPase family AAA domain-containing protein 1 [Aspergillus terreus
           NIH2624]
 gi|114195502|gb|EAU37202.1| ATPase family AAA domain-containing protein 1 [Aspergillus terreus
           NIH2624]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 150 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 203

Query: 113 IVRE 116
           + R+
Sbjct: 204 LARK 207


>gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ peptidase/ zinc ion binding
           [Arabidopsis thaliana]
 gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=AtFTSH6; Flags: Precursor
 gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana]
 gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 256 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 312


>gi|300780435|ref|ZP_07090291.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
 gi|300534545|gb|EFK55604.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
          Length = 865

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 254


>gi|225027803|ref|ZP_03716995.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353]
 gi|224954853|gb|EEG36062.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353]
          Length = 618

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++LVGP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVILVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 256


>gi|224437409|ref|ZP_03658378.1| ATP-dependent Clp protease ClpA [Helicobacter cinaedi CCUG 18818]
 gi|313143871|ref|ZP_07806064.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818]
 gi|313128902|gb|EFR46519.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818]
          Length = 861

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 12/92 (13%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT 
Sbjct: 563 DIESELTKSVVGQESAIKAIARAIKRNK-------AGLSDANRPIGSFLFLGPTGVGKTQ 615

Query: 69  ISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            ++ LA          ++++++++ E   V R
Sbjct: 616 CAKTLAEFLFDNAKSLVRIDMSEYMEKHAVSR 647


>gi|198275273|ref|ZP_03207804.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
 gi|198271856|gb|EDY96126.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
          Length = 738

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ +A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 453 IYGQDEAIRQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 506

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              I+ +++++ E            GY+G     ++ D +    N V
Sbjct: 507 ISLIRFDMSEYMEKHTIAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 553


>gi|170750724|ref|YP_001756984.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657246|gb|ACB26301.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans
           JCM 2831]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
 gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFEQA 272


>gi|145354425|ref|XP_001421485.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581722|gb|ABO99778.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT I R +A   GA F  +  +  T   ++G   E+++R L  VA 
Sbjct: 42  VPKGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVAR 99

Query: 112 NI 113
           ++
Sbjct: 100 HL 101


>gi|119486971|ref|XP_001262405.1| membrane-spanning ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119410562|gb|EAW20508.1| membrane-spanning ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 419

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 587

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++
Sbjct: 184 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFALSGSSFVEL-FVGMGASRV 233


>gi|325264718|ref|ZP_08131447.1| cell division protein FtsH [Clostridium sp. D5]
 gi|324030010|gb|EGB91296.1| cell division protein FtsH [Clostridium sp. D5]
          Length = 696

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 229 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 283

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ YVG    + +RDL
Sbjct: 284 AKVPFFSLSGSAFVEM-YVGVGASR-VRDL 311


>gi|299139539|ref|ZP_07032713.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8]
 gi|298598467|gb|EFI54631.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8]
          Length = 637

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 188 IPKGVLMVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242


>gi|167584242|ref|ZP_02376630.1| Peptidase M41, FtsH [Burkholderia ubonensis Bu]
          Length = 565

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|152980704|ref|YP_001353927.1| peptidase M41 (cell division protein) [Janthinobacterium sp.
           Marseille]
 gi|151280781|gb|ABR89191.1| peptidase M41 (cell division protein) [Janthinobacterium sp.
           Marseille]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 176 LRDPTRFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 230 FVGVGASR-VRDMFDNA 245


>gi|114613357|ref|XP_001153794.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 563

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378


>gi|86748941|ref|YP_485437.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           HaA2]
 gi|86571969|gb|ABD06526.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|15611424|ref|NP_223075.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|6647534|sp|Q9ZM66|FTSH_HELPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|4154882|gb|AAD05932.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|86150355|ref|ZP_01068581.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596161|ref|ZP_01099398.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562730|ref|YP_002344509.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839180|gb|EAQ56443.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191002|gb|EAQ94974.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360436|emb|CAL35233.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926536|gb|EFV05917.1| Membrane bound zinc metallopeptidase FtsH [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929883|gb|EFV09043.1| cell division protease FtsH [Campylobacter jejuni subsp. jejuni
           305]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|330814166|ref|YP_004358405.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487261|gb|AEA81666.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 756

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           ++I   L R I GQ  A  A+A +++    R    + LRD      N L  GPTGVGKT 
Sbjct: 452 KDIEKNLKRIIYGQDHAIEALASSIK--LSR----SGLRDSNKTIGNYLFSGPTGVGKTE 505

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           ++++LA+  G   I+ ++++++E            GYVG
Sbjct: 506 LAKQLAKTLGVELIRFDMSEYSERHTISKLIGAPPGYVG 544


>gi|325114908|emb|CBZ50465.1| putative ATPase, AAA family domain-containing protein [Neospora
           caninum Liverpool]
          Length = 462

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GPTG GKT ++R +A  +  PF+ +    F E+ YVG+   + +R L + A
Sbjct: 75  PRGILLEGPTGTGKTLLARAVAGESSVPFLSISGGSFVEL-YVGQGAAR-VRALFEAA 130


>gi|325288402|ref|YP_004264583.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963803|gb|ADY54582.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 188 IPKGVLLFGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 244


>gi|320335152|ref|YP_004171863.1| ATPase AAA-2 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319756441|gb|ADV68198.1| ATPase AAA-2 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 753

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
           ++L   + GQ +A R VA A++         A LRD   P+   L  GPTGVGKT ++R 
Sbjct: 448 TDLQARVFGQDEAVRQVAGAVKLAR------AGLRDPRRPQGAFLFAGPTGVGKTELARA 501

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA + G   I+ +++++ E   V R
Sbjct: 502 LADVLGVNLIRFDMSEYGEAHTVSR 526


>gi|317012217|gb|ADU82825.1| cell division protease FtsH [Helicobacter pylori Lithuania75]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|308182547|ref|YP_003926674.1| cell division protein [Helicobacter pylori PeCan4]
 gi|308064732|gb|ADO06624.1| cell division protein [Helicobacter pylori PeCan4]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|300120406|emb|CBK19960.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK ILL GP G GKT ++R  A+   A FIK+  T   +  ++G    +I+RD   +A  
Sbjct: 183 PKGILLYGPPGTGKTLLARACAKQTDAAFIKLSATVLDQ-AHIGEG-SRIVRDCFSLAKK 240

Query: 113 IVRESR 118
            + E +
Sbjct: 241 KIEEKQ 246


>gi|294155986|ref|YP_003560370.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
 gi|291600426|gb|ADE19922.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           MPK ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V Q+I +
Sbjct: 230 MPKGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRVRQVITE 285


>gi|283954681|ref|ZP_06372199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414]
 gi|283793873|gb|EFC32624.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|10435339|dbj|BAB14567.1| unnamed protein product [Homo sapiens]
          Length = 254

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 14  PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 69


>gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Corynebacterium glutamicum ATCC 13032]
 gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 853

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 253


>gi|332004754|gb|AED92137.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 254 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 310


>gi|317009024|gb|ADU79604.1| cell division protein (ftsH) [Helicobacter pylori India7]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|307637074|gb|ADN79524.1| cell division protein [Helicobacter pylori 908]
 gi|325995665|gb|ADZ51070.1| Cell division protein [Helicobacter pylori 2018]
 gi|325997261|gb|ADZ49469.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|283956514|ref|ZP_06373994.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792234|gb|EFC31023.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|285016905|ref|YP_003374616.1| ATPase AAA [Xanthomonas albilineans GPE PC73]
 gi|283472123|emb|CBA14630.1| hypothetical atpase of the aaa+ class protein [Xanthomonas
           albilineans]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 33  ALRNRWRRQQLPADLRDELM-------------PKNILLVGPTGVGKTAISRRLARLAGA 79
           A++  W    LP    DE++             PK ILL GP G GKT I+R+LA+ AG 
Sbjct: 311 AVQRHWTDVALPDACLDEILKLVDLFVSGRAPAPKGILLHGPPGTGKTLIARKLAQHAGC 370

Query: 80  PFIKVEVT--KFTEIGYVGRNVEQIIRDLVDVAINIV 114
               + V   K   +G  G  V+ I +   D A  I+
Sbjct: 371 HVEALGVADLKAAHVGNTGPKVQAIWQRCRDNAPAIL 407



 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ IL+ GP G GKT ++R LA  +G  FI +      + GY+G++ +++
Sbjct: 590 VPRGILMSGPPGTGKTQVARILANQSGLAFIALTSADL-KAGYLGQSGQRV 639


>gi|258577939|ref|XP_002543151.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704]
 gi|237903417|gb|EEP77818.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704]
          Length = 410

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 137 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 190

Query: 113 IVRE 116
           + R+
Sbjct: 191 LARK 194


>gi|86150719|ref|ZP_01068935.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|157415377|ref|YP_001482633.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315124593|ref|YP_004066597.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841889|gb|EAQ59135.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|157386341|gb|ABV52656.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748018|gb|ADN91288.1| Cell division protease ftsH-like protein [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315018315|gb|ADT66408.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315932256|gb|EFV11199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 327]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|86152928|ref|ZP_01071133.1| putative Cell division protein FtsH homolog [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|205355861|ref|ZP_03222630.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|85843813|gb|EAQ61023.1| putative Cell division protein FtsH homolog [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|205346295|gb|EDZ32929.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284926344|gb|ADC28696.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|115526687|ref|YP_783598.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisA53]
 gi|115520634|gb|ABJ08618.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|329114969|ref|ZP_08243724.1| ClpA-like protein [Acetobacter pomorum DM001]
 gi|326695412|gb|EGE47098.1| ClpA-like protein [Acetobacter pomorum DM001]
          Length = 781

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 22/115 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           +E++  L+R     + GQ  A  A++ A++         A LRD   P  N L  GPTGV
Sbjct: 458 KEVLRSLERDLKGMVFGQDQAIDALSAAIKLAR------AGLRDAEKPIGNYLFSGPTGV 511

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GKT ++R+LA   G   ++ +++++ E            GYVG +   ++ D +D
Sbjct: 512 GKTEVARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAID 566


>gi|317013821|gb|ADU81257.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|315281718|ref|ZP_07870283.1| negative regulator of genetic competence ClpC/MecB [Listeria
           marthii FSL S4-120]
 gi|313614643|gb|EFR88222.1| negative regulator of genetic competence ClpC/MecB [Listeria
           marthii FSL S4-120]
          Length = 585

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 281 KNLESNLTGKVIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 334

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 335 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 377


>gi|224045854|ref|XP_002190590.1| PREDICTED: fidgetin-like 1 [Taeniopygia guttata]
          Length = 689

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 449 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 504


>gi|217033329|ref|ZP_03438760.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10]
 gi|216944270|gb|EEC23695.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|210134573|ref|YP_002301012.1| cell division protein FtsH [Helicobacter pylori P12]
 gi|210132541|gb|ACJ07532.1| cell division protein FtsH [Helicobacter pylori P12]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|57237998|ref|YP_179247.1| cell division protein FtsH [Campylobacter jejuni RM1221]
 gi|57166802|gb|AAW35581.1| cell division protein FtsH [Campylobacter jejuni RM1221]
 gi|315058557|gb|ADT72886.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|317471079|ref|ZP_07930452.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
 gi|316901447|gb|EFV23388.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
          Length = 609

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 195 IPKGVLLVGPPGTGKTLIAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 247


>gi|306821413|ref|ZP_07455018.1| cell division protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550535|gb|EFM38521.1| cell division protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L  GP G GKT ++R +A  A  PF KV  + F E+ YVG    + +R+L   A
Sbjct: 232 LPNGVLFYGPPGTGKTLMARAIAGEASVPFYKVNGSDFVEL-YVGLGARR-VRNLYKTA 288


>gi|301059211|ref|ZP_07200149.1| cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300446701|gb|EFK10528.1| cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 183 IPKGVLLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFN 237


>gi|254779068|ref|YP_003057173.1| ATP-dependent zinc-metallo protease; putative signal peptide
           [Helicobacter pylori B38]
 gi|254000979|emb|CAX28923.1| ATP-dependent zinc-metallo protease; putative signal peptide
           [Helicobacter pylori B38]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|254386473|ref|ZP_05001776.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
 gi|194345321|gb|EDX26287.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
          Length = 841

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL R +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 495 FKLTEEESSRLLRMEDELHRRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 591


>gi|114327774|ref|YP_744931.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
 gi|114315948|gb|ABI62008.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|28212045|ref|NP_782989.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28204488|gb|AAO36926.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 624

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 173 VAGQEEAKESLMEIVDFLHNSDKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 227

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 228 AKVPFFSISGSGFVEM-FVGMGAAR-VRDLFEQA 259


>gi|83854838|ref|ZP_00948368.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. NAS-14.1]
 gi|83941361|ref|ZP_00953823.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. EE-36]
 gi|83842681|gb|EAP81848.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. NAS-14.1]
 gi|83847181|gb|EAP85056.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. EE-36]
          Length = 773

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLEASLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|91978602|ref|YP_571261.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisB5]
 gi|91685058|gb|ABE41360.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|315638816|ref|ZP_07893988.1| cell division protein FtsH [Campylobacter upsaliensis JV21]
 gi|315481034|gb|EFU71666.1| cell division protein FtsH [Campylobacter upsaliensis JV21]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 579

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 15/98 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK ++L GP G GKT +++ +A+ AG  F     + F ++ YVG    + +RD      
Sbjct: 181 MPKGLILYGPPGTGKTLMAKAIAKEAGVAFFSASGSDFVQM-YVGVGASR-VRD------ 232

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTRE 149
            I +E+R+    E+A I  +E  +DA +GK  + N  +
Sbjct: 233 -IFKEARK---HEKAVIFIDE--IDA-IGKKRSQNAAQ 263


>gi|261837811|gb|ACX97577.1| metalloprotease [Helicobacter pylori 51]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|258645726|ref|ZP_05733195.1| cell division protein FtsH [Dialister invisus DSM 15470]
 gi|260403095|gb|EEW96642.1| cell division protein FtsH [Dialister invisus DSM 15470]
          Length = 628

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK  +A     L+N  R   + A +     PK +LLVGP G GKT +++ +A  
Sbjct: 156 VAGEDEAKEELAEVVDFLKNPGRYTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAGE 210

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 211 AKVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|226355735|ref|YP_002785475.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           deserti VCD115]
 gi|226317725|gb|ACO45721.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Deinococcus deserti VCD115]
          Length = 739

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73
           +L   + GQ +A  AVA A++         A LRD+  P+ + L  GPTGVGKT ++R L
Sbjct: 450 DLKSRVFGQDEAVEAVASAVKLAR------AGLRDQTKPQGMFLFAGPTGVGKTELARAL 503

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           A   G    + +++++ E            GYVG +   ++ D V
Sbjct: 504 AERLGIELTRFDMSEYQEAHTVARLIGAPPGYVGFDQGGLLTDAV 548


>gi|197287224|ref|YP_002153096.1| cell division protein [Proteus mirabilis HI4320]
 gi|227357081|ref|ZP_03841451.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
 gi|194684711|emb|CAR46686.1| cell division protein [Proteus mirabilis HI4320]
 gi|227162773|gb|EEI47736.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LRDPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|308812043|ref|XP_003083329.1| aspartyl aminopeptidase (ISS) [Ostreococcus tauri]
 gi|116055209|emb|CAL57605.1| aspartyl aminopeptidase (ISS) [Ostreococcus tauri]
          Length = 1045

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 52   MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
            +PK +LL GP G GKT I R +A   GA F  +  +  T   ++G   E+++R L  VA 
Sbjct: 907  VPKGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVAR 964

Query: 111  -----------INIVRESRRDEVREQASINAEERILDALVGKT 142
                       I+ +  +R+ +   ++S   +   L  L+G T
Sbjct: 965  HLSPAVIFVDEIDSLLSARKSDGEHESSRRMKTEFLTLLIGAT 1007


>gi|108562803|ref|YP_627119.1| cell division protein [Helicobacter pylori HPAG1]
 gi|298736681|ref|YP_003729209.1| cell division protease FtsH [Helicobacter pylori B8]
 gi|107836576|gb|ABF84445.1| cell division protein [Helicobacter pylori HPAG1]
 gi|298355873|emb|CBI66745.1| cell division protease FtsH [Helicobacter pylori B8]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032]
          Length = 860

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 204 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 260


>gi|33865745|ref|NP_897304.1| cell division protein FtsH4 [Synechococcus sp. WH 8102]
 gi|33632915|emb|CAE07726.1| cell division protein FtsH4 [Synechococcus sp. WH 8102]
          Length = 615

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 201 IPRGVLLVGPPGTGKTLLARAIAGEAEVPFFSMAASEFVEL-FVGVGASR-VRDL 253


>gi|332673225|gb|AEE70042.1| cell division protein FtsH [Helicobacter pylori 83]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|317177190|dbj|BAJ54979.1| cell division protein [Helicobacter pylori F16]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|310815409|ref|YP_003963373.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Ketogulonicigenium vulgare Y25]
 gi|308754144|gb|ADO42073.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 458 KDLEPSLKRVVFGQDKAIEALASAIK------LARAGLREPEKPIGNYLFAGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D +D
Sbjct: 512 VAKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGID 562


>gi|305431847|ref|ZP_07401014.1| cell division protein FtsH [Campylobacter coli JV20]
 gi|304444931|gb|EFM37577.1| cell division protein FtsH [Campylobacter coli JV20]
          Length = 649

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 213 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 269


>gi|261839226|gb|ACX98991.1| cell division protein (ftsH) [Helicobacter pylori 52]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|167747338|ref|ZP_02419465.1| hypothetical protein ANACAC_02057 [Anaerostipes caccae DSM 14662]
 gi|167653316|gb|EDR97445.1| hypothetical protein ANACAC_02057 [Anaerostipes caccae DSM 14662]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 169 IPKGVLLVGPPGTGKTLIAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 221


>gi|158337485|ref|YP_001518660.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307726|gb|ABW29343.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT +++ ++  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 198 IPRGVLLIGPPGTGKTLLAKAISGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 254


>gi|281361487|ref|NP_649938.2| Rpt3R [Drosophila melanogaster]
 gi|54650682|gb|AAV36920.1| RE01104p [Drosophila melanogaster]
 gi|272476906|gb|AAF54440.2| Rpt3R [Drosophila melanogaster]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 159 IQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 213

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RDL  +A
Sbjct: 214 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 241


>gi|21064189|gb|AAM29324.1| AT28212p [Drosophila melanogaster]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 112 IQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 166

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RDL  +A
Sbjct: 167 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 194


>gi|1589774|gb|AAC44563.1| HpFtsH [Helicobacter pylori]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|27382257|ref|NP_773786.1| metalloprotease [Bradyrhizobium japonicum USDA 110]
 gi|5531227|emb|CAB51029.1| metalloprotease FtsH [Bradyrhizobium japonicum]
 gi|27355428|dbj|BAC52411.1| metalloprotease [Bradyrhizobium japonicum USDA 110]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|121612703|ref|YP_001000794.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005709|ref|ZP_02271467.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249221|gb|EAQ72182.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|90426214|ref|YP_534584.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisB18]
 gi|90108228|gb|ABD90265.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|110637033|ref|YP_677240.1| cell division protein, ATP-dependent metalloprotease [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279714|gb|ABG57900.1| membrane protease FtsH catalytic subunit [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 692

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 236 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 292


>gi|308061729|gb|ADO03617.1| cell division protein (ftsH) [Helicobacter pylori Cuz20]
 gi|315586369|gb|ADU40750.1| cell division protein FtsH [Helicobacter pylori 35A]
 gi|317179228|dbj|BAJ57016.1| cell division protein [Helicobacter pylori F30]
 gi|317181720|dbj|BAJ59504.1| cell division protein [Helicobacter pylori F57]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|260582442|ref|ZP_05850233.1| cell division protein [Haemophilus influenzae NT127]
 gi|260094422|gb|EEW78319.1| cell division protein [Haemophilus influenzae NT127]
          Length = 456

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|163854236|ref|YP_001642279.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens
           PA1]
 gi|218533182|ref|YP_002423998.1| ATP-dependent metalloprotease FtsH [Methylobacterium
           chloromethanicum CM4]
 gi|240141697|ref|YP_002966177.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens AM1]
 gi|254564205|ref|YP_003071300.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens DM4]
 gi|163665841|gb|ABY33208.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens
           PA1]
 gi|218525485|gb|ACK86070.1| ATP-dependent metalloprotease FtsH [Methylobacterium
           chloromethanicum CM4]
 gi|240011674|gb|ACS42900.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens AM1]
 gi|254271483|emb|CAX27498.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens DM4]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|116329654|ref|YP_799373.1| shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332539|ref|YP_802256.1| shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122279737|sp|Q04NM2|AROK_LEPBJ RecName: Full=Shikimate kinase; Short=SK
 gi|122282568|sp|Q04WV5|AROK_LEPBL RecName: Full=Shikimate kinase; Short=SK
 gi|116122547|gb|ABJ80440.1| Shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127406|gb|ABJ77498.1| Shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           M KN  L+GP GVGK+ ISR+L+++ G P +  ++    E+G  G ++ + I++
Sbjct: 1   MRKNFALIGPRGVGKSKISRKLSKITGMPVVSTDMIAVYEMG--GISIPEFIQE 52


>gi|308184180|ref|YP_003928313.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
 gi|308060100|gb|ADO01996.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|226329690|ref|ZP_03805208.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
 gi|225202876|gb|EEG85230.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LRDPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|308799665|ref|XP_003074613.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
 gi|116000784|emb|CAL50464.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
          Length = 659

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P   LLVGP G GKT ++R +A  +G  F  V  ++F E+ +VGR   ++
Sbjct: 392 LPSGCLLVGPPGTGKTLLARAVAGESGVSFFPVAASEFVEL-FVGRGAARV 441


>gi|15645683|ref|NP_207860.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|2492508|sp|P71408|FTSH_HELPY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2314219|gb|AAD08115.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|317180726|dbj|BAJ58512.1| cell division protein [Helicobacter pylori F32]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|310657531|ref|YP_003935252.1| cell division protein ftsh [Clostridium sticklandii DSM 519]
 gi|308824309|emb|CBH20347.1| putative cell division protein ftsh [Clostridium sticklandii]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ++  GP G GKT +++ +A  AG PF KV  + F E+ YVG
Sbjct: 232 LPNGVIFYGPPGTGKTLMAKAIAGEAGVPFFKVNGSDFVEL-YVG 275


>gi|297379599|gb|ADI34486.1| ATP-dependent metalloprotease FtsH [Helicobacter pylori v225d]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|258543659|ref|YP_003189092.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634737|dbj|BAI00713.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637793|dbj|BAI03762.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640847|dbj|BAI06809.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643902|dbj|BAI09857.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646957|dbj|BAI12905.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650010|dbj|BAI15951.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653000|dbj|BAI18934.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656054|dbj|BAI21981.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|255264039|ref|ZP_05343381.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium
           sp. R2A62]
 gi|255106374|gb|EET49048.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium
           sp. R2A62]
          Length = 774

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 RDLEKSLKRVVFGQDPAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 563


>gi|255038784|ref|YP_003089405.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
 gi|254951540|gb|ACT96240.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 285


>gi|254461530|ref|ZP_05074946.1| cell division protein FtsH [Rhodobacterales bacterium HTCC2083]
 gi|206678119|gb|EDZ42606.1| cell division protein FtsH [Rhodobacteraceae bacterium HTCC2083]
          Length = 637

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|116872398|ref|YP_849179.1| ATP-dependent protease clpE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741276|emb|CAK20398.1| ATP-dependent protease clpE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 420 KNLESNLTGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 473

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|84683911|ref|ZP_01011813.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667664|gb|EAQ14132.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Rhodobacterales bacterium HTCC2654]
          Length = 873

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ  A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 566 LHKRVIGQDQAVRAVANAVR-RAR-----AGLNDEARPLGSFLFLGPTGVGKTELTKAVA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 620 EFLFDDDSAMVRIDMSEFMEKHAVAR 645


>gi|57168002|ref|ZP_00367141.1| cell division protein FtsH [Campylobacter coli RM2228]
 gi|57020376|gb|EAL57045.1| cell division protein FtsH [Campylobacter coli RM2228]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 212 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 268


>gi|57506024|ref|ZP_00371947.1| cell division protein FtsH [Campylobacter upsaliensis RM3195]
 gi|57015632|gb|EAL52423.1| cell division protein FtsH [Campylobacter upsaliensis RM3195]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|315126398|ref|YP_004068401.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas sp. SM9913]
 gi|315014912|gb|ADT68250.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas sp. SM9913]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E +  LDR     + GQ  +  A+  A+R    R    + L +E  P  + L  GPT
Sbjct: 446 SDKETLKNLDRNLKMLVFGQDQSIDALTSAIR--LSR----SGLANENKPVGSFLFAGPT 499

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++++LA+  G  FI+ +++++ E   V R
Sbjct: 500 GVGKTEVTKQLAKCMGVEFIRFDMSEYVERHAVSR 534


>gi|291060125|gb|ADD72860.1| putative Cell division protease FtsH-like protein [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 675

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF ++  + F E+ +VG    + +RDL   A
Sbjct: 239 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEM-FVGIGASR-VRDLFKQA 295


>gi|237745684|ref|ZP_04576164.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
 gi|229377035|gb|EEO27126.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGLLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFETA 245


>gi|226363749|ref|YP_002781531.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           opacus B4]
 gi|226242238|dbj|BAH52586.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           opacus B4]
          Length = 845

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AVA A+R R R     A L+D   P  + +  GP+GVGKT +++ L
Sbjct: 511 ELHKRIIGQEDAVKAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELAKSL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|189219156|ref|YP_001939797.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943085|sp|B3DV46|FTSH1_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|189186014|gb|ACD83199.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 636

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 31/163 (19%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R + L A +     PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ 
Sbjct: 199 LKNPSRYRALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM- 252

Query: 94  YVGRNVEQIIRDLVDVA------INIVRE----SRRDEVREQASINAEERILDALVGKT- 142
           +VG    + +RDL   A      I  + E     R+  VR Q   +  E+ L+ L+ +  
Sbjct: 253 FVGVGAAR-VRDLFGQAKSKAPCIVFIDELDAIGRQRGVRIQVGSDEHEQTLNQLLVEMD 311

Query: 143 -----------ATSNTREVF-RKKLRDGEISDKEIDIEVADTS 173
                      A +N  E+  R  LR G   D+++ +++ D +
Sbjct: 312 GFDPNEGIIVLAATNRPEILDRALLRPGRF-DRQVVVDLPDAN 353


>gi|188527188|ref|YP_001909875.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|188143428|gb|ACD47845.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|308063240|gb|ADO05127.1| cell division protein (ftsH) [Helicobacter pylori Sat464]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258


>gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201]
 gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201]
          Length = 709

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 202 VPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 258


>gi|162146632|ref|YP_001601091.1| cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785207|emb|CAP54753.1| Cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 191 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 245


>gi|145248756|ref|XP_001400717.1| ATPase family AAA domain-containing protein 1 [Aspergillus niger
           CBS 513.88]
 gi|134081386|emb|CAK41887.1| unnamed protein product [Aspergillus niger]
          Length = 415

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|121714425|ref|XP_001274823.1| membrane-spanning ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119402977|gb|EAW13397.1| membrane-spanning ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|111021395|ref|YP_704367.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
 gi|110820925|gb|ABG96209.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
          Length = 845

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AVA A+R R R     A L+D   P  + +  GP+GVGKT +++ L
Sbjct: 511 ELHKRIIGQEDAVKAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELAKSL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|83592434|ref|YP_426186.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575348|gb|ABC21899.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|50289553|ref|XP_447208.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526517|emb|CAG60141.1| unnamed protein product [Candida glabrata]
          Length = 750

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  QL A +     P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ 
Sbjct: 297 LKNPAKYTQLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 350

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 351 FVGVGASR-VRDLFEQA 366


>gi|325995549|gb|ADZ50954.1| ClpB protein [Helicobacter pylori 2018]
 gi|325997145|gb|ADZ49353.1| ClpB protein [Helicobacter pylori 2017]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 618

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 200 VCPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 257


>gi|316932670|ref|YP_004107652.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
 gi|315600384|gb|ADU42919.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|242240755|ref|YP_002988936.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
 gi|242132812|gb|ACS87114.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
          Length = 654

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK IL+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|226226799|ref|YP_002760905.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
 gi|226089990|dbj|BAH38435.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 204 LPKGALLVGPPGTGKTLLAKAVAGEAGRPFFSMSGSDFVEM-FVGVGASR-VRDLFE 258


>gi|225556242|gb|EEH04531.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus
           G186AR]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201

Query: 113 IVRE 116
           + R+
Sbjct: 202 LARK 205


>gi|241557135|ref|XP_002400178.1| ATPase, putative [Ixodes scapularis]
 gi|215501757|gb|EEC11251.1| ATPase, putative [Ixodes scapularis]
          Length = 340

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  AGA F  +  +  T   +VG   E+++R L  VA
Sbjct: 94  PKGLLLFGPPGTGKTLIGKCIASQAGATFFCISASSLTS-KWVGEG-EKMVRALFAVA 149


>gi|148259383|ref|YP_001233510.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326402604|ref|YP_004282685.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146401064|gb|ABQ29591.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325049465|dbj|BAJ79803.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|306430713|emb|CBJ17103.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430721|emb|CBJ17107.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430725|emb|CBJ17109.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|299134182|ref|ZP_07027375.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2]
 gi|298590929|gb|EFI51131.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|209543376|ref|YP_002275605.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531053|gb|ACI50990.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|29654649|ref|NP_820341.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 493]
 gi|161831494|ref|YP_001597194.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
 gi|29541917|gb|AAO90855.1| cell division protein [Coxiella burnetii RSA 493]
 gi|161763361|gb|ABX79003.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|307636958|gb|ADN79408.1| ClpB protein [Helicobacter pylori 908]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|296160892|ref|ZP_06843704.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888781|gb|EFG68587.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 495

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R ++L   +     PK +L+VG  G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 29  LRNAERYRRLGGKI-----PKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSAFVEM- 82

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 83  FVGVGAAR-VRDLFEQA 98


>gi|194674963|ref|XP_612083.4| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
 gi|297485228|ref|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
 gi|296478145|gb|DAA20260.1| AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
          Length = 845

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++  A  AG PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 310 IPKGALLTGPPGTGKTLLAKATAGEAGVPFITVNGSEFLEM-FVGVGPAR-VRDMFALA 366


>gi|209886398|ref|YP_002290255.1| putative Cell division protease FtsH -like protein [Oligotropha
           carboxidovorans OM5]
 gi|209874594|gb|ACI94390.1| putative Cell division protease FtsH -like protein [Oligotropha
           carboxidovorans OM5]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|121602051|ref|YP_988506.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis
           KC583]
 gi|310943119|sp|A1URA3|FTSH_BARBK RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|120614228|gb|ABM44829.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis
           KC583]
          Length = 764

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|85714371|ref|ZP_01045359.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A]
 gi|85698818|gb|EAQ36687.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|46206271|ref|ZP_00047502.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 264

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 53  IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 109


>gi|323455708|gb|EGB11576.1| hypothetical protein AURANDRAFT_10538 [Aureococcus anophagefferens]
          Length = 574

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P+ +LL GP G GKT ++R  A  AG PFI    ++F E+ +VG    +I
Sbjct: 162 PRGVLLEGPPGTGKTLLARACAGEAGVPFISTSGSEFVEM-FVGVGASRI 210


>gi|298713780|emb|CBJ27152.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK ILL GP G GKT ++R  A+   A F+K+   +  ++ ++G    +++RD    A  
Sbjct: 227 PKGILLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQM-FIGDGA-KLVRD----AFE 280

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164
           + +E  +D+ +  A I  +E  LDA+  K      S  REV R  L      DG  S+ +
Sbjct: 281 LAKEKCKDQQKGGAIIFIDE--LDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFSSNDK 338

Query: 165 IDIEVADTSSDI 176
           I +  A    D+
Sbjct: 339 IKVIAATNRPDV 350


>gi|215408561|emb|CAR31130.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|160901931|ref|YP_001567512.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
 gi|310943086|sp|A9BFL9|FTSH1_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|160359575|gb|ABX31189.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N    Q+L A      MPK  LLVGP G GKT  +R +A  A  PF     + F E+ 
Sbjct: 198 LKNPQEFQELGAR-----MPKGTLLVGPPGTGKTLTARAIAGEADVPFYYASGSDFVEL- 251

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 252 FVGVGASR-VRDLFKTA 267


>gi|169618870|ref|XP_001802848.1| hypothetical protein SNOG_12628 [Phaeosphaeria nodorum SN15]
 gi|111058806|gb|EAT79926.1| hypothetical protein SNOG_12628 [Phaeosphaeria nodorum SN15]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 151 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 204

Query: 113 IVRE 116
           + R+
Sbjct: 205 LARK 208


>gi|227489340|ref|ZP_03919656.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090713|gb|EEI26025.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 776

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 266


>gi|224457497|ref|ZP_03665970.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159986|gb|ADA79377.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|254487525|ref|ZP_05100730.1| cell division protein FtsH [Roseobacter sp. GAI101]
 gi|214044394|gb|EEB85032.1| cell division protein FtsH [Roseobacter sp. GAI101]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|212212273|ref|YP_002303209.1| cell division protein [Coxiella burnetii CbuG_Q212]
 gi|212010683|gb|ACJ18064.1| cell division protein [Coxiella burnetii CbuG_Q212]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|152993533|ref|YP_001359254.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
 gi|310946765|sp|A6QBN8|FTSH_SULNB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|151425394|dbj|BAF72897.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL
Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSGFIEM-FVGVGASR-VRDL 268


>gi|150864081|ref|XP_001382776.2| Mitochondrial respiratory chain complexes assembly protein RCA1
           (TAT-binding homolog 12) [Scheffersomyces stipitis CBS
           6054]
 gi|149385337|gb|ABN64747.2| Mitochondrial respiratory chain complexes assembly protein RCA1
           (TAT-binding homolog 12) [Scheffersomyces stipitis CBS
           6054]
          Length = 867

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK  V      L+N  + ++L A +     P+  +L GP G GKT ++R  A
Sbjct: 390 RDVAGMAEAKEEVMEFVKFLQNPEKYERLGAKI-----PRGAILSGPPGTGKTLLARATA 444

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 445 GEAGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 478


>gi|148926137|ref|ZP_01809823.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845616|gb|EDK22708.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266


>gi|118497264|ref|YP_898314.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida U112]
 gi|194323566|ref|ZP_03057343.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208779057|ref|ZP_03246403.1| cell division protein FtsH [Francisella novicida FTG]
 gi|118423170|gb|ABK89560.1| ATP-dependent metalloprotease [Francisella novicida U112]
 gi|194322421|gb|EDX19902.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208744857|gb|EDZ91155.1| cell division protein FtsH [Francisella novicida FTG]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|119180025|ref|XP_001241520.1| hypothetical protein CIMG_08683 [Coccidioides immitis RS]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 128 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 173


>gi|39934201|ref|NP_946477.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           CGA009]
 gi|192289727|ref|YP_001990332.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           TIE-1]
 gi|39648049|emb|CAE26569.1| metalloprotease (cell division protein) FtsH [Rhodopseudomonas
           palustris CGA009]
 gi|192283476|gb|ACE99856.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           TIE-1]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|9279712|dbj|BAB01269.1| cell division protein FtsH-like [Arabidopsis thaliana]
          Length = 976

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 542 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 585


>gi|328675799|gb|AEB28474.1| Cell division protein FtsH [Francisella cf. novicida 3523]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|302881951|ref|XP_003039886.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256720753|gb|EEU34173.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 394

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +I+R +  +A
Sbjct: 144 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KIVRAVFSLA 199


>gi|254374098|ref|ZP_04989580.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
 gi|151571818|gb|EDN37472.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|94498969|ref|ZP_01305507.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
 gi|94428601|gb|EAT13573.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
          Length = 870

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            EL ++++GQ DA  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHKHVVGQDDAITAVSNAVR-RSR-----AGLSDPRKPNGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    +++++++F E   V R
Sbjct: 618 LATFMFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|83952816|ref|ZP_00961546.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           nubinhibens ISM]
 gi|83835951|gb|EAP75250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           nubinhibens ISM]
          Length = 750

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 437 KDLAASLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 490

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++L+   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 491 VAKQLSMTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 541


>gi|288941980|ref|YP_003444220.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
 gi|288897352|gb|ADC63188.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|227540928|ref|ZP_03970977.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183188|gb|EEI64160.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 776

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 266


>gi|255079944|ref|XP_002503552.1| predicted protein [Micromonas sp. RCC299]
 gi|226518819|gb|ACO64810.1| predicted protein [Micromonas sp. RCC299]
          Length = 886

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P  +LLVG  G GKT ++R +A  AG PFI V  ++F E+ Y+G    + +RD+
Sbjct: 421 PCGVLLVGAPGTGKTLLARAVAGEAGVPFISVSASEFVEL-YMGMGAAR-VRDV 472


>gi|196004594|ref|XP_002112164.1| hypothetical protein TRIADDRAFT_50249 [Trichoplax adhaerens]
 gi|190586063|gb|EDV26131.1| hypothetical protein TRIADDRAFT_50249 [Trichoplax adhaerens]
          Length = 392

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  + S++    I +Q+ K AV + L +    QQ+  D      P+ +L+ GP G GKT 
Sbjct: 134 PNILYSDIGGMDIQKQEMKEAVELPLTHFDLYQQIGID-----PPRGVLMYGPPGCGKTM 188

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 189 LAKAVAHHTTASFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 228


>gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii]
 gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P    SE+    + +++ + A+   L N+   +++  DL     PK ++L GP G GKT 
Sbjct: 123 PEVKYSEIGGLELQKEEIREAIEFPLINKNFYEKIGIDL-----PKGVMLFGPPGTGKTL 177

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + + +A    A FIK   ++F +  Y+G    +++RDL  +A
Sbjct: 178 VVKAVALKTKASFIKTAGSEFVQ-KYLGEG-PKMVRDLFKIA 217


>gi|153209334|ref|ZP_01947353.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218758|ref|YP_002305545.1| cell division protein [Coxiella burnetii CbuK_Q154]
 gi|120575405|gb|EAX32029.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013020|gb|ACJ20400.1| cell division protein [Coxiella burnetii CbuK_Q154]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|254372637|ref|ZP_04988126.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570364|gb|EDN36018.1| ATP-dependent metalloprotease [Francisella novicida GA99-3549]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|134302352|ref|YP_001122321.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050129|gb|ABO47200.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|158523054|ref|YP_001530924.1| ATP-dependent metalloprotease FtsH [Desulfococcus oleovorans Hxd3]
 gi|158511880|gb|ABW68847.1| ATP-dependent metalloprotease FtsH [Desulfococcus oleovorans Hxd3]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 191 IPKGVLLVGAPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 243


>gi|75676894|ref|YP_319315.1| peptidase M41, FtsH [Nitrobacter winogradskyi Nb-255]
 gi|74421764|gb|ABA05963.1| membrane protease FtsH catalytic subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|317008914|gb|ADU79494.1| heat shock protein [Helicobacter pylori India7]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|300934644|ref|ZP_07149900.1| ATP-dependent Clp protease [Corynebacterium resistens DSM 45100]
          Length = 888

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 510 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 563

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 564 FAGPSGVGKTELSKALAEF 582


>gi|237748682|ref|ZP_04579162.1| cell division protease [Oxalobacter formigenes OXCC13]
 gi|229380044|gb|EEO30135.1| cell division protease [Oxalobacter formigenes OXCC13]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGLLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFETA 245


>gi|242793974|ref|XP_002482275.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718863|gb|EED18283.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|154707633|ref|YP_001424787.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
 gi|154356919|gb|ABS78381.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|225163496|ref|ZP_03725810.1| ATPase AAA-2 domain protein [Opitutaceae bacterium TAV2]
 gi|224801913|gb|EEG20195.1| ATPase AAA-2 domain protein [Opitutaceae bacterium TAV2]
          Length = 851

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 7/64 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +E+ + +IGQ  A  A+A ALR R R     ADL+D   P  + L VGPTGVGKT  +
Sbjct: 526 IEAEIQKVVIGQDVASIAIARALR-RSR-----ADLKDPRRPIGSFLFVGPTGVGKTETA 579

Query: 71  RRLA 74
           ++LA
Sbjct: 580 KQLA 583


>gi|56708367|ref|YP_170263.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670837|ref|YP_667394.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370990|ref|ZP_04986993.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875190|ref|ZP_05247900.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604859|emb|CAG45943.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321170|emb|CAL09326.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569231|gb|EDN34885.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841189|gb|EET19625.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|15611319|ref|NP_222970.1| heat shock protein [Helicobacter pylori J99]
 gi|11386720|sp|Q9ZMH1|CLPB_HELPJ RecName: Full=Chaperone protein ClpB
 gi|4154766|gb|AAD05825.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|306430647|emb|CBJ17070.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|296117359|ref|ZP_06835949.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
 gi|295976125|gb|EFG82913.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|187931961|ref|YP_001891946.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712870|gb|ACD31167.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|165924052|ref|ZP_02219884.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
 gi|165916511|gb|EDR35115.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244


>gi|115315152|ref|YP_763875.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130051|gb|ABI83238.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|2062173|gb|AAB63647.1| cell division protein FtsH isolog [Arabidopsis thaliana]
          Length = 983

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 604 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 647


>gi|72092070|ref|XP_784405.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115940005|ref|XP_001186119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 271

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++ +  T+  Y
Sbjct: 132 PKGVLLYGPPGCGKTMIAKAIAKDAGCRFINLQASNLTDKWY 173


>gi|42523406|ref|NP_968786.1| cell division protein [Bdellovibrio bacteriovorus HD100]
 gi|81617319|sp|Q6MLS7|FTSH1_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|39575612|emb|CAE79779.1| cell division protein [Bdellovibrio bacteriovorus HD100]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 195 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 249


>gi|15639752|ref|NP_219202.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025990|ref|YP_001933762.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|6016059|sp|O83746|FTSH_TREPA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3323067|gb|AAC65728.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018565|gb|ACD71183.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
          Length = 609

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF ++  + F E+ +VG    + +RDL   A
Sbjct: 173 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEM-FVGIGASR-VRDLFKQA 229


>gi|22298071|ref|NP_681318.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294249|dbj|BAC08080.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 619

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEL-FVGVGSAR-VRDLFEQA 257


>gi|318056561|ref|ZP_07975284.1| cell division protein FtsH-like protein [Streptomyces sp. SA3_actG]
 gi|318081009|ref|ZP_07988341.1| cell division protein FtsH-like protein [Streptomyces sp. SA3_actF]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 230 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 289

Query: 110 AINIV 114
           A +I+
Sbjct: 290 APSII 294


>gi|307103115|gb|EFN51378.1| hypothetical protein CHLNCDRAFT_37431 [Chlorella variabilis]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LLVGP G GKT +++ +A  AG PF  +  T+F E+ +VG    + +RD+   A
Sbjct: 88  PAGMLLVGPPGTGKTLLAKAVAGEAGVPFFSIAGTEFMEM-FVGVGASR-VRDIFKQA 143


>gi|307721590|ref|YP_003892730.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294]
 gi|306979683|gb|ADN09718.1| ATPase AAA-2 domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 858

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 12/90 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL++ ++GQ  A  AVA A+ RN+       A L D+  P  + L +GPTGVGKT  ++ 
Sbjct: 568 ELNKTVVGQSQATHAVARAIKRNK-------AGLSDKNRPIGSFLFLGPTGVGKTQTAKT 620

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA+    +    I+++++++ E   V R V
Sbjct: 621 LAKFLFDSEDALIRIDMSEYMEKHAVSRLV 650


>gi|301167025|emb|CBW26604.1| cell division protein [Bacteriovorax marinus SJ]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 190 IPKGCLLVGPPGTGKTLLARAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDLFE 244


>gi|328676753|gb|AEB27623.1| Cell division protein FtsH [Francisella cf. novicida Fx1]
          Length = 637

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|255994135|ref|ZP_05427270.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989]
 gi|255993803|gb|EEU03892.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989]
          Length = 623

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK +LLVGP G GKT IS+  A  A  PF  +  + F E+ 
Sbjct: 180 LKNPAKFKELGARV-----PKGVLLVGPPGTGKTYISKAAAGEADVPFYTISGSDFVEM- 233

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 234 FVGVGASR-VRDL 245


>gi|166365336|ref|YP_001657609.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
           NIES-843]
 gi|166087709|dbj|BAG02417.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
           NIES-843]
          Length = 795

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 21/100 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            +L   IIGQQ+A  AV+ A+R R R      +L++   P  + +  GPTGVGKT +++ 
Sbjct: 471 CQLHERIIGQQEAVNAVSRAIR-RAR-----VNLKNPNRPIASFIFAGPTGVGKTELTKA 524

Query: 73  LARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98
           LA+L   + +  I++++++F E            GY+G N
Sbjct: 525 LAKLLFGSESSMIRLDMSEFMESHTVSKLIGAPPGYIGYN 564


>gi|149194984|ref|ZP_01872077.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
 gi|149134905|gb|EDM23388.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFNQA 260


>gi|89256753|ref|YP_514115.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89256757|ref|YP_514119.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502918|ref|YP_001428983.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010897|ref|ZP_02275828.1| cell division protein FtsH [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368050|ref|ZP_04984070.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|290953313|ref|ZP_06557934.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313457|ref|ZP_06804057.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144584|emb|CAJ79903.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89144588|emb|CAJ79907.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253860|gb|EBA52954.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|156253521|gb|ABU62027.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|222824258|ref|YP_002575832.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222539480|gb|ACM64581.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 208 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 264


>gi|300934619|ref|ZP_07149875.1| cell division protein [Corynebacterium resistens DSM 45100]
          Length = 896

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 201 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFQQA 257


>gi|260581686|ref|ZP_05849483.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127]
 gi|260095279|gb|EEW79170.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|303321109|ref|XP_003070549.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110245|gb|EER28404.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320035995|gb|EFW17935.1| ATPase family AAA domain-containing protein 1 [Coccidioides
           posadasii str. Silveira]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 145 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 190


>gi|238492753|ref|XP_002377613.1| membrane-spanning ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220696107|gb|EED52449.1| membrane-spanning ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|254369652|ref|ZP_04985662.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122611|gb|EDO66740.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|148654368|ref|YP_001274573.1| ATPase [Roseiflexus sp. RS-1]
 gi|148566478|gb|ABQ88623.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 20/112 (17%)

Query: 8   SPREIV-SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
           +P +IV  +L   I GQ+ A  AV I + NR R      + R    P+  +L +GPTGVG
Sbjct: 17  NPLDIVEKQLRHTIFGQERAIEAV-IRVLNRARFGFSAGNPR---RPRATLLFLGPTGVG 72

Query: 66  KTAISRRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVEQII 103
           KTA++RRLA+L    G  F+K++ + F++       +G    YVGR+ + ++
Sbjct: 73  KTAMARRLAQLLRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQKPLL 124


>gi|222086969|ref|YP_002545503.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
 gi|221724417|gb|ACM27573.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|16126707|ref|NP_421271.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter
           crescentus CB15]
 gi|221235489|ref|YP_002517926.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter
           crescentus NA1000]
 gi|13424017|gb|AAK24439.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter
           crescentus CB15]
 gi|220964662|gb|ACL96018.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter
           crescentus NA1000]
          Length = 776

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ S+L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 462 KELESDLKRAVFGQDEALSQLAAAMKLAR------AGLREPNKPIGSYLFSGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
            +++LA+  G   ++ +++++ E            GYVG +    + D VD
Sbjct: 516 AAKQLAQTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGQLTDAVD 566


>gi|68249453|ref|YP_248565.1| ClpB [Haemophilus influenzae 86-028NP]
 gi|68057652|gb|AAX87905.1| ClpB [Haemophilus influenzae 86-028NP]
 gi|309973650|gb|ADO96851.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           R2846]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|212535740|ref|XP_002148026.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210070425|gb|EEA24515.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|197305085|pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
 gi|197305086|pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
          Length = 357

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 172


>gi|145629931|ref|ZP_01785713.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae
           R3021]
 gi|229844737|ref|ZP_04464876.1| ClpB [Haemophilus influenzae 6P18H1]
 gi|144984212|gb|EDJ91635.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae
           R3021]
 gi|229812451|gb|EEP48141.1| ClpB [Haemophilus influenzae 6P18H1]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|145341796|ref|XP_001415989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576212|gb|ABO94281.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 247

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P   LLVGP G GKT ++R +A  +G  F  V  ++F E+ +VGR   ++
Sbjct: 36  LPTGCLLVGPPGTGKTLLARAVAGESGVAFFPVAASEFVEL-FVGRGAARV 85


>gi|330991883|ref|ZP_08315832.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp.
           SXCC-1]
 gi|329760904|gb|EGG77399.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp.
           SXCC-1]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|312210594|emb|CBX90680.1| similar to ATPase family AAA domain-containing protein 1
           [Leptosphaeria maculans]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206

Query: 113 IVRE 116
           + R+
Sbjct: 207 LARK 210


>gi|218441710|ref|YP_002380039.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218174438|gb|ACK73171.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 625

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 256


>gi|145632228|ref|ZP_01787963.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634718|ref|ZP_01790426.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           PittAA]
 gi|260579950|ref|ZP_05847780.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW]
 gi|144987135|gb|EDJ93665.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267884|gb|EDK07880.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           PittAA]
 gi|260093234|gb|EEW77167.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|113953212|ref|YP_730528.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
 gi|113880563|gb|ABI45521.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
          Length = 620

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIAASEFVEL-FVGVGASR-VRDL 242


>gi|51209907|ref|YP_063571.1| cell division protein [Gracilaria tenuistipitata var. liui]
 gi|50657661|gb|AAT79646.1| ftsH protease homolog [Gracilaria tenuistipitata var. liui]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAIAGEANVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|317156743|ref|XP_001825967.2| ATPase family AAA domain-containing protein 1 [Aspergillus oryzae
           RIB40]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|325108972|ref|YP_004270040.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
 gi|324969240|gb|ADY60018.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
          Length = 751

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD    AI
Sbjct: 286 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDTFQQAI 343

Query: 112 N 112
            
Sbjct: 344 Q 344


>gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
 gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
          Length = 829

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT ++R +A  AG PF  V   +F E+ Y G    + ++DL   A 
Sbjct: 321 VPKGVLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEM-YAGVAAAR-VQDLFSRAR 378

Query: 112 NIV 114
           N  
Sbjct: 379 NFA 381


>gi|255527632|ref|ZP_05394493.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           carboxidivorans P7]
 gi|296185310|ref|ZP_06853720.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           carboxidivorans P7]
 gi|255508674|gb|EET85053.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           carboxidivorans P7]
 gi|296050144|gb|EFG89568.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           carboxidivorans P7]
          Length = 739

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGKTAISRRLA 74
           + + I GQ+ A  ++  A++         A   DE     N+L VGPTGVGKT I ++++
Sbjct: 451 IKKEIFGQEKAIESIVTAIKKSR------AGFNDENKTVANLLFVGPTGVGKTEICKQVS 504

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
           +    P I+ +++++ E   V R
Sbjct: 505 KALNIPLIRFDMSEYQEKHTVAR 527


>gi|255264093|ref|ZP_05343435.1| cell division protease FtsH [Thalassiobium sp. R2A62]
 gi|255106428|gb|EET49102.1| cell division protease FtsH [Thalassiobium sp. R2A62]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|218674234|ref|ZP_03523903.1| cell division metalloproteinase protein [Rhizobium etli GR56]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 181 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 237


>gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 624

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 199 IPRGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 255


>gi|189194139|ref|XP_001933408.1| ATPase family AAA domain-containing protein 1-A [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978972|gb|EDU45598.1| ATPase family AAA domain-containing protein 1-A [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206

Query: 113 IVRE 116
           + R+
Sbjct: 207 LARK 210


>gi|162149244|ref|YP_001603705.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787821|emb|CAP57419.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 778

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+  A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 461 RTLERDLKGMVYGQDRAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 515 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 565


>gi|170593893|ref|XP_001901698.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi]
 gi|158590642|gb|EDP29257.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi]
          Length = 741

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG----RNVEQIIRDL 106
           +PK  LL GP G GKT +++ LA  +  PFI +  T+F E IG +G    RN+ +  + +
Sbjct: 306 LPKGALLTGPPGCGKTFLAKALAAESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKM 365

Query: 107 VDVAINI 113
               I I
Sbjct: 366 APCIIYI 372


>gi|145636576|ref|ZP_01792243.1| ClpB [Haemophilus influenzae PittHH]
 gi|145270102|gb|EDK10038.1| ClpB [Haemophilus influenzae PittHH]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|145495511|ref|XP_001433748.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400868|emb|CAK66351.1| unnamed protein product [Paramecium tetraurelia]
          Length = 785

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R     L+   + ++L A +     P+  LL GP G GKT +++  A  
Sbjct: 294 VAGQEEAKGEIREFVDFLKAPKKYKKLGARI-----PRGALLTGPPGTGKTLLAKACAGE 348

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  V  ++F E+ YVG
Sbjct: 349 AGVPFFYVSGSEFVEM-YVG 367


>gi|74181490|dbj|BAE30014.1| unnamed protein product [Mus musculus]
          Length = 314

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|83954495|ref|ZP_00963206.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1]
 gi|83840779|gb|EAP79950.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|325095291|gb|EGC48601.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus
           H88]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201

Query: 113 IVRE 116
           + R+
Sbjct: 202 LARK 205


>gi|317013709|gb|ADU81145.1| heat shock protein [Helicobacter pylori Gambia94/24]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|301154792|emb|CBW14255.1| protein disaggregation chaperone [Haemophilus parainfluenzae T3T1]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|206562175|ref|YP_002232938.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
 gi|198038215|emb|CAR54168.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK +L+VG  G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 188 LRSPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAGVPFFTISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|163733525|ref|ZP_02140968.1| cell division protein FtsH [Roseobacter litoralis Och 149]
 gi|161393313|gb|EDQ17639.1| cell division protein FtsH [Roseobacter litoralis Och 149]
          Length = 624

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 171 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227


>gi|16272799|ref|NP_439019.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           Rd KW20]
 gi|1168973|sp|P44403|CLPB_HAEIN RecName: Full=Chaperone protein ClpB
 gi|1573874|gb|AAC22518.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Haemophilus
           influenzae Rd KW20]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|302522154|ref|ZP_07274496.1| cell division protein [Streptomyces sp. SPB78]
 gi|302431049|gb|EFL02865.1| cell division protein [Streptomyces sp. SPB78]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 243 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 302

Query: 110 AINIV 114
           A +I+
Sbjct: 303 APSII 307


>gi|299753427|ref|XP_001833271.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130]
 gi|298410295|gb|EAU88544.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130]
          Length = 766

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF     + F E+ +VG   ++ +R+L   A
Sbjct: 350 LPKGVLLTGPPGTGKTMLARAVAGEAGVPFFFASGSDFEEM-FVGVGAKR-VRELFAAA 406


>gi|229825873|ref|ZP_04451942.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
 gi|229789893|gb|EEP26007.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ++L GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 201 IPKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 253


>gi|225708004|gb|ACO09848.1| 26S protease regulatory subunit 6B [Osmerus mordax]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|224085219|ref|XP_002307519.1| predicted protein [Populus trichocarpa]
 gi|222856968|gb|EEE94515.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL +YI+GQ++A +AV+ A+R R R        +D   P  + L  GPTGVGKT +++ 
Sbjct: 332 AELHKYIVGQEEAVKAVSHAIR-RAR-----VGTKDPNKPIASFLFTGPTGVGKTELAKA 385

Query: 73  LA 74
           LA
Sbjct: 386 LA 387


>gi|195053231|ref|XP_001993530.1| GH13014 [Drosophila grimshawi]
 gi|193900589|gb|EDV99455.1| GH13014 [Drosophila grimshawi]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           QD + +V + +R+R     L  + +    PK +LL GP G GKT I++  A+ AG  FI 
Sbjct: 107 QDLRESVVLPVRHR----DLFKESKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162

Query: 84  VEVTKFTEIGY 94
           ++V   T+  Y
Sbjct: 163 LDVAILTDKWY 173


>gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila]
 gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210]
          Length = 708

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVGP G GKT ++R LA  AG  F     ++F E+ +VG
Sbjct: 309 LPKGILLVGPPGTGKTLLARALAGEAGCSFFYKSGSEFDEM-FVG 352


>gi|110679380|ref|YP_682387.1| cell division protein FtsH [Roseobacter denitrificans OCh 114]
 gi|109455496|gb|ABG31701.1| cell division protein FtsH [Roseobacter denitrificans OCh 114]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|333024173|ref|ZP_08452237.1| putative cell division protein [Streptomyces sp. Tu6071]
 gi|332744025|gb|EGJ74466.1| putative cell division protein [Streptomyces sp. Tu6071]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 241 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 300

Query: 110 AINIV 114
           A +I+
Sbjct: 301 APSII 305


>gi|332523822|ref|ZP_08400074.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315086|gb|EGJ28071.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 699

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +EI S L  ++IGQ  A  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 407 KEIASRLKAHVIGQDQAVSAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 460

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 461 LAKQLA 466


>gi|297181897|gb|ADI18074.1| ATP-dependent zn proteases [uncultured Acidobacteriales bacterium
           HF0200_23L05]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 185 IPKGVLLMGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 239


>gi|297527012|ref|YP_003669036.1| ATPase associated with various cellular activities AAA_5
          [Staphylothermus hellenicus DSM 12710]
 gi|297255928|gb|ADI32137.1| ATPase associated with various cellular activities AAA_5
          [Staphylothermus hellenicus DSM 12710]
          Length = 381

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%)

Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + V EL R  +G+++  + +A+A+                +  ++++L+G  G  K+A+
Sbjct: 13 HKFVEELARPFVGREEEAKVIALAI----------------ISGEHVVLIGEPGTAKSAL 56

Query: 70 SRRLARLAGAPFIKVEVTKFTE 91
          +RR A L  A F K  +TKFTE
Sbjct: 57 ARRAAELINAKFFKYLLTKFTE 78


>gi|226470306|emb|CAX70433.1| YME1-Like (Mitochondrial Escape) AAA protease [Schistosoma
           japonicum]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  +   + A L     PK +LLVGP GVGKT +++ ++  A  PF+ V  + F E+ 
Sbjct: 185 LRNPEKFNHIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYVSGSSFEEV- 238

Query: 94  YVGRNVEQI 102
           +VG    ++
Sbjct: 239 FVGLGASRV 247


>gi|241206180|ref|YP_002977276.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860070|gb|ACS57737.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 251


>gi|260812674|ref|XP_002601045.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae]
 gi|229286336|gb|EEN57057.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae]
          Length = 665

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 424 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKLVRALFAVA 479


>gi|197302375|ref|ZP_03167432.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC
           29176]
 gi|197298554|gb|EDY33097.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC
           29176]
          Length = 612

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 197 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 249


>gi|90418980|ref|ZP_01226891.1| ATP-dependent metalloprotease involved in cell division
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337060|gb|EAS50765.1| ATP-dependent metalloprotease involved in cell division
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|325518654|gb|EGC98292.1| cell division protease [Burkholderia sp. TJI49]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 64  LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 117

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 118 FVGVGAAR-VRDLFEQA 133


>gi|330926583|ref|XP_003301523.1| hypothetical protein PTT_13047 [Pyrenophora teres f. teres 0-1]
 gi|311323601|gb|EFQ90376.1| hypothetical protein PTT_13047 [Pyrenophora teres f. teres 0-1]
          Length = 463

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206

Query: 113 IVRE 116
           + R+
Sbjct: 207 LARK 210


>gi|262371848|ref|ZP_06065127.1| predicted protein [Acinetobacter junii SH205]
 gi|262311873|gb|EEY92958.1| predicted protein [Acinetobacter junii SH205]
          Length = 786

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           PK ILL GP G GKT I+R+L + A   F  V ++   + GY+G+   ++
Sbjct: 325 PKGILLYGPPGTGKTLIARKLQKHANCHFEAVNISDL-KAGYIGQTAPKV 373



 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT--KFTEIGYVGRNVEQII 103
           PK ILL GP G GKT I+R LA  +G  FI    +  K   IG  G  V+Q+ 
Sbjct: 572 PKGILLYGPPGTGKTQIARVLASQSGLSFIGATTSDLKANYIGQSGSKVKQLF 624


>gi|261335539|emb|CBH18533.1| cell division protein FtsH homologue, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 677

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 24/152 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           +PK  LL G  G GKT ++R +A  A APF+      F EI  G   + V ++     + 
Sbjct: 205 LPKGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREA 264

Query: 110 AINIVRESRRDEV---------------REQASINAEERILDALVGKT-----ATSNTRE 149
           A  IV     D +                E  +IN     LD L  K      A +N  E
Sbjct: 265 APCIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPE 324

Query: 150 VFRKK-LRDGEISDKEIDIEVADTSSDISNFD 180
           V  K  LR+G   D+++++ + D S+ +  F+
Sbjct: 325 VIDKALLREGRF-DRKVNVPMPDRSARVELFE 355


>gi|255326126|ref|ZP_05367213.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
 gi|255296837|gb|EET76167.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
          Length = 724

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 264


>gi|223889283|ref|ZP_03623870.1| cell division protein FtsH [Borrelia burgdorferi 64b]
 gi|223885204|gb|EEF56307.1| cell division protein FtsH [Borrelia burgdorferi 64b]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|209545020|ref|YP_002277249.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532697|gb|ACI52634.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 778

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+  A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 461 RTLERDLKGMVYGQDRAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 515 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 565


>gi|226321254|ref|ZP_03796782.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
 gi|226233286|gb|EEH32037.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|216263728|ref|ZP_03435723.1| cell division protein FtsH [Borrelia afzelii ACA-1]
 gi|215980572|gb|EEC21393.1| cell division protein FtsH [Borrelia afzelii ACA-1]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 668

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVGP G GKT ++R LA  AG  F     ++F E+ +VG
Sbjct: 270 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 313


>gi|124359471|gb|ABN05909.1| Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M,
           neutral zinc metallopeptidases, zinc-binding site;
           Peptidase M41, FtsH extracellular [Medicago truncatula]
          Length = 569

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 241 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 297


>gi|150397697|ref|YP_001328164.1| ATPase [Sinorhizobium medicae WSM419]
 gi|150029212|gb|ABR61329.1| ATPase AAA-2 domain protein [Sinorhizobium medicae WSM419]
          Length = 868

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647


>gi|15595134|ref|NP_212923.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|195942000|ref|ZP_03087382.1| cell division protein (ftsH) [Borrelia burgdorferi 80a]
 gi|216264644|ref|ZP_03436636.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218249315|ref|YP_002375288.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221217602|ref|ZP_03589071.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224533427|ref|ZP_03674020.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225549393|ref|ZP_03770365.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|225550274|ref|ZP_03771233.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|226321220|ref|ZP_03796754.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|310943120|sp|B7J0N5|FTSH_BORBZ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2688712|gb|AAC67120.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|215981117|gb|EEC21924.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218164503|gb|ACK74564.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221192548|gb|EEE18766.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224513389|gb|EEF83747.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225369142|gb|EEG98596.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|225370021|gb|EEG99462.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|226233374|gb|EEH32121.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|312148114|gb|ADQ30773.1| cell division protein FtsH [Borrelia burgdorferi JD1]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|283457233|ref|YP_003361803.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
 gi|310946761|sp|D2NQQ7|FTSH_ROTMD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283133218|dbj|BAI63983.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
          Length = 756

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 233 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 285


>gi|258542820|ref|YP_003188253.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633898|dbj|BAH99873.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636957|dbj|BAI02926.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640010|dbj|BAI05972.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643066|dbj|BAI09021.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646121|dbj|BAI12069.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649174|dbj|BAI15115.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652161|dbj|BAI18095.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655218|dbj|BAI21145.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 871

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 569 ELRKSVVGQEQALKAVSNAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         +++++++F E   V R
Sbjct: 623 ARFLFDDDKALLRIDMSEFMEKHAVAR 649


>gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 254


>gi|222480369|ref|YP_002566606.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453271|gb|ACM57536.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
           +L VGP G GKT +SR LA   G P ++V+++  T   +G   +NVE+
Sbjct: 218 LLFVGPPGTGKTTVSRALAHELGIPLVEVKMSMITSQYLGETAKNVEK 265


>gi|224534150|ref|ZP_03674730.1| cell division protein FtsH [Borrelia spielmanii A14S]
 gi|224514575|gb|EEF84889.1| cell division protein FtsH [Borrelia spielmanii A14S]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 691

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 224 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 280


>gi|83943922|ref|ZP_00956379.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36]
 gi|83845169|gb|EAP83049.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|329114582|ref|ZP_08243341.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
 gi|326696062|gb|EGE47744.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
          Length = 890

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 588 ELRKSVVGQEQALKAVSNAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 641

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         +++++++F E   V R
Sbjct: 642 ARFLFDDDKALLRIDMSEFMEKHAVAR 668


>gi|325662452|ref|ZP_08151058.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471286|gb|EGC74510.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
             A  PF  +  + F E+ YVG    + +RDL
Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDL 254


>gi|291562242|emb|CBL41058.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SS3/4]
          Length = 616

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 209 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 265


>gi|291515858|emb|CBK65068.1| ATP-dependent metalloprotease FtsH [Alistipes shahii WAL 8301]
          Length = 693

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 45  ADLRDEL---MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           AD   EL   +PK  LLVGP G GKT +++ +A  A  PF+ +  + F E+ +VG    +
Sbjct: 219 ADKYKELGAKIPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR 277

Query: 102 IIRDLVDVA 110
            +RDL + A
Sbjct: 278 -VRDLFEQA 285


>gi|312115440|ref|YP_004013036.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100]
 gi|311220569|gb|ADP71937.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+ + +IGQ++A R+VA A+R R R     A L+D   P  + + +GPTGVGKT +SR L
Sbjct: 567 EVAKRVIGQEEAVRSVATAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELSRAL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  ++++++++ E   V R
Sbjct: 621 AAFLFDDESAMVRIDMSEYMEKHSVAR 647


>gi|225551709|ref|ZP_03772653.1| cell division protein FtsH [Borrelia sp. SV1]
 gi|225371736|gb|EEH01162.1| cell division protein FtsH [Borrelia sp. SV1]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|154272137|ref|XP_001536921.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           capsulatus NAm1]
 gi|150408908|gb|EDN04364.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           capsulatus NAm1]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201

Query: 113 IVRE 116
           + R+
Sbjct: 202 LARK 205


>gi|111115623|ref|YP_710241.1| cell division protein [Borrelia afzelii PKo]
 gi|110890897|gb|ABH02065.1| cell division protein [Borrelia afzelii PKo]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|160878301|ref|YP_001557269.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|160426967|gb|ABX40530.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 609

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 248


>gi|331086242|ref|ZP_08335324.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406401|gb|EGG85915.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
             A  PF  +  + F E+ YVG    + +RDL
Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDL 254


>gi|327193462|gb|EGE60358.1| cell division metalloproteinase protein [Rhizobium etli CNPAF512]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|332716439|ref|YP_004443905.1| cell division protein [Agrobacterium sp. H13-3]
 gi|325063124|gb|ADY66814.1| cell division protein [Agrobacterium sp. H13-3]
          Length = 654

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|319404753|emb|CBI78355.1| cell division protein FtsH [Bartonella rochalimae ATCC BAA-1498]
          Length = 696

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|238917787|ref|YP_002931304.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238873147|gb|ACR72857.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 622

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++L GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEEA 252


>gi|148642414|ref|YP_001272927.1| proteasome-activating nucleotidase [Methanobrevibacter smithii ATCC
           35061]
 gi|222446088|ref|ZP_03608603.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869526|ref|ZP_05974789.2| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
 gi|148551431|gb|ABQ86559.1| ATP-dependent 26S proteasome regulatory subunit, RPT1
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435653|gb|EEE42818.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861736|gb|EFC94034.1| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
          Length = 420

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 17/103 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK ILL GP G GKT +++ +A    A FIK+  ++F +  Y+G    +++R++ ++A  
Sbjct: 195 PKGILLYGPPGTGKTLLAKAVANETNATFIKIVASEFVK-KYIGEGA-RLVREVFELA-- 250

Query: 113 IVRESRRDEVREQASINAEERILDALVG---KTATSNTREVFR 152
                   + +  A I  +E  LDA+     K++TS  REV R
Sbjct: 251 --------KEKAPAIIFIDE--LDAVAAKRLKSSTSGDREVQR 283


>gi|150397821|ref|YP_001328288.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419]
 gi|150029336|gb|ABR61453.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|30585275|gb|AAP36910.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 4
           [synthetic construct]
 gi|61369393|gb|AAX43328.1| proteasome 26S subunit 4 [synthetic construct]
 gi|61369396|gb|AAX43329.1| proteasome 26S subunit 4 [synthetic construct]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|74141846|dbj|BAE40993.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae]
          Length = 824

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 202 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 258


>gi|152964564|ref|YP_001360348.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151359081|gb|ABS02084.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 851

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL + +IGQ DA +A++ A+R R R     A L+D   P  + +  GPTGVGKT +++ 
Sbjct: 526 AELHKRVIGQNDAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKA 579

Query: 73  LAR-LAGA--PFIKVEVTKFTEIGYVGR 97
           LA  L G     I++++++F+E   V R
Sbjct: 580 LAEFLFGEEDALIQLDMSEFSEKHTVSR 607


>gi|325264334|ref|ZP_08131065.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5]
 gi|324030405|gb|EGB91689.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5]
          Length = 606

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 248


>gi|317010545|gb|ADU84292.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           pylori SouthAfrica7]
          Length = 856

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I SEL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYLEKHAISR 645


>gi|312149056|gb|ADQ29127.1| cell division protein FtsH [Borrelia burgdorferi N40]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040554|gb|ACT57350.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +E+ + +IGQ  A  +V+ ALR R+R     A L+D   P  + + +GPTGVGKT + 
Sbjct: 562 IETEISKSVIGQSAAVESVSNALR-RFR-----AGLQDPQRPMGSFMFLGPTGVGKTELV 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LARL        I+++++++ E   V R
Sbjct: 616 KSLARLLFDDENSMIRIDMSEYMEKHSVSR 645


>gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia]
          Length = 673

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVGP G GKT ++R LA  AG  F     ++F E+ +VG
Sbjct: 275 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 318


>gi|172065486|ref|YP_001816198.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|171997728|gb|ACB68645.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|26341428|dbj|BAC34376.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|74025930|ref|XP_829531.1| metalloprotease [Trypanosoma brucei TREU927]
 gi|70834917|gb|EAN80419.1| metalloprotease, putative [Trypanosoma brucei]
          Length = 677

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 24/152 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           +PK  LL G  G GKT ++R +A  A APF+      F EI  G   + V ++     + 
Sbjct: 205 LPKGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREA 264

Query: 110 AINIVRESRRDEV---------------REQASINAEERILDALVGKT-----ATSNTRE 149
           A  IV     D +                E  +IN     LD L  K      A +N  E
Sbjct: 265 APCIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPE 324

Query: 150 VFRKK-LRDGEISDKEIDIEVADTSSDISNFD 180
           V  K  LR+G   D+++++ + D S+ +  F+
Sbjct: 325 VIDKALLREGRF-DRKVNVPMPDRSARVELFE 355


>gi|325577681|ref|ZP_08147956.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392]
 gi|325160426|gb|EGC72552.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392]
          Length = 856

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|320335120|ref|YP_004171831.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756409|gb|ADV68166.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     P  +LLVGP G GKT +++ +A  AG P+  +  + F E+ 
Sbjct: 176 LRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAGEAGVPYFSISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 230 FVGVGAAR-VRDLFEQA 245


>gi|312138070|ref|YP_004005406.1| DNA binding ATP-dependent peptidase [Rhodococcus equi 103S]
 gi|311887409|emb|CBH46721.1| putative DNA binding ATP-dependent peptidase [Rhodococcus equi
           103S]
          Length = 851

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 511 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|306820237|ref|ZP_07453879.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551734|gb|EFM39683.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L++G  G GKT +S+ +A  AG PF  +  + F E+ YVG    + +R+L D A
Sbjct: 200 IPKGMLMIGSPGTGKTYLSKAVAGEAGVPFYSISGSGFVEM-YVGVGAAR-VRELFDQA 256


>gi|298244152|ref|ZP_06967958.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297551633|gb|EFH85498.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 770

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 319 IPRGALLVGPPGTGKTLLARAVAGEAQVPFFSMSASEFVEM-FVGVGASR-VRDLFNQA 375


>gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH]
 gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFNQA 262


>gi|182678641|ref|YP_001832787.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634524|gb|ACB95298.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 829

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 18/115 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L+R + GQ  A  A+  A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 466 LTETLERVVYGQNSAIEALTAAIKLAR------AGLRDGEKPIGSYLFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           R+LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 520 RQLATSLGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHCV 574


>gi|116253705|ref|YP_769543.1| cell division protein FtsH [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258353|emb|CAK09455.1| putative cell division protein FtsH [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|86359049|ref|YP_470941.1| cell division metalloproteinase protein [Rhizobium etli CFN 42]
 gi|86283151|gb|ABC92214.1| cell division metalloproteinase protein [Rhizobium etli CFN 42]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|77165372|ref|YP_343897.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|254434916|ref|ZP_05048424.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|76883686|gb|ABA58367.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207091249|gb|EDZ68520.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 629

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LL GP G GKT ++R +A  A  PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 206 MPKGVLLAGPPGTGKTLLARAVAGEARVPFFNISGSEFIEL-FVGVGAAR-ARDLFEQA 262


>gi|119386519|ref|YP_917574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus
           denitrificans PD1222]
 gi|119377114|gb|ABL71878.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus
           denitrificans PD1222]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 459 KDLDATLKRLVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 VAKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 563


>gi|319409312|emb|CBI82956.1| cell division protein FtsH [Bartonella schoenbuchensis R1]
          Length = 684

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|325675027|ref|ZP_08154714.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
 gi|325554613|gb|EGD24288.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
          Length = 851

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 511 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|296491906|ref|YP_003662371.1| hypothetical protein XNC1_p0088 [Xenorhabdus nematophila ATCC
           19061]
 gi|289176791|emb|CBJ92956.1| hypothetical protein XNC1_p0088 [Xenorhabdus nematophila ATCC
           19061]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 30/183 (16%)

Query: 241 VENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVSTKYG------- 289
           V   GI+ LDEFDK+ A  S     NGI     G+Q+ LL  ++G  +            
Sbjct: 103 VATKGIIHLDEFDKLSASFSVEKDVNGI-----GIQQSLLKPLDGVEIGITNPNPSRINP 157

Query: 290 ----SINTDHILFIASGAFH---VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLI 337
               ++NT++++F+ +G+F+   +S P +L     +PE+  R    +HLK  N+++   +
Sbjct: 158 NPILNLNTNNMIFVFTGSFNGKKMSCPKNLIDSGFIPELANRVDFFIHLKEPNENELFKM 217

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
             D E  L  +     +++G+ + F +     LA  A  L      +       V ++++
Sbjct: 218 ANDDE--LYEKAVRFAESKGMNISFDDSFKSLLAREAFKLGGHYRSVSYLFNNIVYDKIV 275

Query: 398 EDI 400
           E I
Sbjct: 276 EMI 278


>gi|288819200|ref|YP_003433548.1| cell division protein [Hydrogenobacter thermophilus TK-6]
 gi|288788600|dbj|BAI70347.1| cell division protein [Hydrogenobacter thermophilus TK-6]
 gi|308752782|gb|ADO46265.1| ATP-dependent metalloprotease FtsH [Hydrogenobacter thermophilus
           TK-6]
          Length = 625

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL G  GVGKT +++ +A  A  PFI V  + F E+ +VG    + +RDL D A
Sbjct: 188 PKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEM-FVGVGAAR-VRDLFDTA 243


>gi|240276675|gb|EER40186.1| ATPase family AAA protein [Ajellomyces capsulatus H143]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 131 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 184

Query: 113 IVRE 116
           + R+
Sbjct: 185 LARK 188


>gi|296126118|ref|YP_003633370.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
 gi|296017934|gb|ADG71171.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
          Length = 701

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL +
Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 267


>gi|227823304|ref|YP_002827276.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234]
 gi|227342305|gb|ACP26523.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|224070955|ref|XP_002303302.1| predicted protein [Populus trichocarpa]
 gi|222840734|gb|EEE78281.1| predicted protein [Populus trichocarpa]
          Length = 844

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 415 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 458


>gi|226443298|ref|NP_001140138.1| 26S protease regulatory subunit 6B [Salmo salar]
 gi|221221488|gb|ACM09405.1| 26S protease regulatory subunit 6B [Salmo salar]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|193213633|ref|YP_001999586.1| ATPase AAA-2 domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193087110|gb|ACF12386.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL R ++GQ +A RAV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEAELHRRVVGQDEAVRAVSDAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220


>gi|190893271|ref|YP_001979813.1| cell division metalloproteinase [Rhizobium etli CIAT 652]
 gi|190698550|gb|ACE92635.1| cell division metalloproteinase protein [Rhizobium etli CIAT 652]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|126734040|ref|ZP_01749787.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. CCS2]
 gi|126716906|gb|EBA13770.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. CCS2]
          Length = 871

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+ A R+VA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 563 ELGKRVIGQKTAVRSVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 617 AEYLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|5729991|ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens]
 gi|78045535|ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus]
 gi|57036547|ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
           (MB67 interacting protein) (TAT-binding protein-7)
           (TBP-7) isoform 1 [Canis familiaris]
 gi|109124720|ref|XP_001090787.1| PREDICTED: 26S protease regulatory subunit 6B isoform 4 [Macaca
           mulatta]
 gi|114677257|ref|XP_001141141.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 3 [Pan
           troglodytes]
 gi|114677259|ref|XP_001141225.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 4 [Pan
           troglodytes]
 gi|114677261|ref|XP_001141307.1| PREDICTED: 26S protease regulatory subunit 6B isoform 5 [Pan
           troglodytes]
 gi|291414121|ref|XP_002723309.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 1 [Oryctolagus
           cuniculus]
 gi|297704775|ref|XP_002829267.1| PREDICTED: 26S protease regulatory subunit 6B-like [Pongo abelii]
 gi|301776689|ref|XP_002923751.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 1
           [Ailuropoda melanoleuca]
 gi|332242479|ref|XP_003270413.1| PREDICTED: 26S protease regulatory subunit 6B isoform 1 [Nomascus
           leucogenys]
 gi|20532409|sp|P43686|PRS6B_HUMAN RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=MB67-interacting protein; AltName: Full=MIP224;
           AltName: Full=Proteasome 26S subunit ATPase 4; AltName:
           Full=Tat-binding protein 7; Short=TBP-7
 gi|75076754|sp|Q4R7L3|PRS6B_MACFA RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=Proteasome 26S subunit ATPase 4
 gi|115311846|sp|Q3T030|PRS6B_BOVIN RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=Proteasome 26S subunit ATPase 4
 gi|5080757|gb|AAD39267.1|AC007842_2 ATPase homolog [Homo sapiens]
 gi|2791680|gb|AAC26843.1| 26S proteasome ATPase subunit [Homo sapiens]
 gi|4096275|gb|AAC99817.1| MIP224 [Homo sapiens]
 gi|12653151|gb|AAH00343.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo
           sapiens]
 gi|15680265|gb|AAH14488.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo
           sapiens]
 gi|30583303|gb|AAP35896.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo
           sapiens]
 gi|61359261|gb|AAX41690.1| proteasome 26S subunit 4 [synthetic construct]
 gi|67969109|dbj|BAE00909.1| unnamed protein product [Macaca fascicularis]
 gi|74267788|gb|AAI02596.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Bos taurus]
 gi|119577333|gb|EAW56929.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform
           CRA_b [Homo sapiens]
 gi|123981944|gb|ABM82801.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [synthetic
           construct]
 gi|123996401|gb|ABM85802.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [synthetic
           construct]
 gi|158261593|dbj|BAF82974.1| unnamed protein product [Homo sapiens]
 gi|189053748|dbj|BAG36000.1| unnamed protein product [Homo sapiens]
 gi|296477804|gb|DAA19919.1| 26S protease regulatory subunit 6B [Bos taurus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|319406242|emb|CBI79879.1| cell division protein FtsH [Bartonella sp. AR 15-3]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|256160407|ref|ZP_05458096.1| cell division protein FtsH [Brucella ceti M490/95/1]
 gi|256255613|ref|ZP_05461149.1| cell division protein FtsH [Brucella ceti B1/94]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|226324326|ref|ZP_03799844.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
 gi|225206774|gb|EEG89128.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
          Length = 715

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 221 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 275

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 276 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 307


>gi|161522900|ref|YP_001585829.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189348269|ref|YP_001941465.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|160346453|gb|ABX19537.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189338407|dbj|BAG47475.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|159185871|ref|NP_356910.2| metalloprotease [Agrobacterium tumefaciens str. C58]
 gi|159141005|gb|AAK89695.2| metalloprotease [Agrobacterium tumefaciens str. C58]
          Length = 648

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|154247012|ref|YP_001417970.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2]
 gi|154161097|gb|ABS68313.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|307313053|ref|ZP_07592680.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti BL225C]
 gi|306899372|gb|EFN30006.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti BL225C]
          Length = 868

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647


>gi|300871007|ref|YP_003785879.1| ATP-dependent metalloprotease FtsH [Brachyspira pilosicoli 95/1000]
 gi|300688707|gb|ADK31378.1| ATP-dependent metalloprotease, FtsH [Brachyspira pilosicoli
           95/1000]
          Length = 698

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL +
Sbjct: 211 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 265


>gi|297834500|ref|XP_002885132.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
 gi|297330972|gb|EFH61391.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 440 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 483


>gi|291539854|emb|CBL12965.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279


>gi|290473441|ref|YP_003466308.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
 gi|289172741|emb|CBJ79512.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|257062950|ref|YP_003142622.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|310946762|sp|C7N1I1|FTSH_SLAHD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256790603|gb|ACV21273.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 783

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  + Q+L A +     P+  LLVGP G GKT ++R +A  A  PF  +  ++F E+ 
Sbjct: 304 LVNPGKYQKLGAKI-----PRGCLLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM- 357

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +R+L + A
Sbjct: 358 FVGVGASR-VRNLFEQA 373


>gi|256822681|ref|YP_003146644.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella
           koreensis DSM 16069]
 gi|256796220|gb|ACV26876.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella
           koreensis DSM 16069]
          Length = 755

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++++LARL G   I+++++++ E   V R
Sbjct: 489 SFLFAGPTGVGKTEVTKQLARLMGVELIRIDMSEYMERHTVSR 531


>gi|255549872|ref|XP_002515987.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223544892|gb|EEF46407.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 884

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 451 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 494


>gi|167753106|ref|ZP_02425233.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216]
 gi|167659420|gb|EDS03550.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216]
          Length = 698

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF+ +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR-VRDLFEQA 281


>gi|149722121|ref|XP_001498472.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 4
           isoform 2 [Equus caballus]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|149722119|ref|XP_001498459.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 4
           isoform 1 [Equus caballus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|126466305|ref|YP_001041414.1| ATPase [Staphylothermus marinus F1]
 gi|126015128|gb|ABN70506.1| ATPase associated with various cellular activities, AAA_5
          [Staphylothermus marinus F1]
          Length = 381

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%)

Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + V EL R  +G+++  + +A+A+                +  ++++L+G  G  K+A+
Sbjct: 13 HKFVEELARPFVGREEEAKVIALAI----------------ISGEHVVLIGEPGTAKSAL 56

Query: 70 SRRLARLAGAPFIKVEVTKFTE 91
          +RR A L  A F K  +TKFTE
Sbjct: 57 ARRAAELINAKFFKYLLTKFTE 78


>gi|15966361|ref|NP_386714.1| ATP-dependent protease [Sinorhizobium meliloti 1021]
 gi|307321060|ref|ZP_07600466.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti AK83]
 gi|54035884|sp|Q92MK7|CLPB_RHIME RecName: Full=Chaperone protein ClpB
 gi|15075632|emb|CAC47187.1| Probable ATP-dependent protease (heat shock protein) [Sinorhizobium
           meliloti 1021]
 gi|306893335|gb|EFN24115.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti AK83]
          Length = 868

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647


>gi|117923752|ref|YP_864369.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1]
 gi|310943137|sp|A0L4S0|FTSH_MAGSM RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|117607508|gb|ABK42963.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1]
          Length = 673

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 186 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFNLSGSDFVEM-FVGVGAAR-VRDMFE 240


>gi|315605193|ref|ZP_07880240.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313114|gb|EFU61184.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 683

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    + +R+L + A
Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264


>gi|318037365|ref|NP_001188178.1| 26S protease regulatory subunit 6b [Ictalurus punctatus]
 gi|308323801|gb|ADO29036.1| 26S protease regulatory subunit 6b [Ictalurus punctatus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|296233807|ref|XP_002762172.1| PREDICTED: 26S protease regulatory subunit 6B [Callithrix jacchus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|240851213|ref|YP_002972616.1| cell division protein FtsH [Bartonella grahamii as4aup]
 gi|240268336|gb|ACS51924.1| cell division protein FtsH [Bartonella grahamii as4aup]
          Length = 716

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|225628260|ref|ZP_03786294.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo]
 gi|254700353|ref|ZP_05162181.1| cell division protein FtsH [Brucella suis bv. 5 str. 513]
 gi|254703470|ref|ZP_05165298.1| cell division protein FtsH [Brucella suis bv. 3 str. 686]
 gi|254708441|ref|ZP_05170269.1| cell division protein FtsH [Brucella pinnipedialis M163/99/10]
 gi|254708706|ref|ZP_05170517.1| cell division protein FtsH [Brucella pinnipedialis B2/94]
 gi|254714553|ref|ZP_05176364.1| cell division protein FtsH [Brucella ceti M644/93/1]
 gi|254717450|ref|ZP_05179261.1| cell division protein FtsH [Brucella ceti M13/05/1]
 gi|254719694|ref|ZP_05181505.1| cell division protein FtsH [Brucella sp. 83/13]
 gi|256030232|ref|ZP_05443846.1| cell division protein FtsH [Brucella pinnipedialis M292/94/1]
 gi|260167907|ref|ZP_05754718.1| cell division protein FtsH [Brucella sp. F5/99]
 gi|225616106|gb|EEH13154.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|225620270|ref|YP_002721527.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
 gi|225215089|gb|ACN83823.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
          Length = 698

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL +
Sbjct: 209 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 263


>gi|222087300|ref|YP_002545837.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221724748|gb|ACM27904.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 866

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL ++++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDDTAMVRMDMSEYMEKHSVAR 646


>gi|160878484|ref|YP_001557452.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|160427150|gb|ABX40713.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 182 VAGQEEAKESLTELVDFLHNPGKYTRIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 237 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 268


>gi|163814011|ref|ZP_02205404.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759]
 gi|158450705|gb|EDP27700.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759]
          Length = 649

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+ I + LD+ I GQ +AK+  +  L N    +            +N++ VGPTG GKT
Sbjct: 353 SPKRIKAYLDKKIYGQDEAKQVASTLLWNHVNGR-----------ARNVVFVGPTGCGKT 401

Query: 68  AISRRLARL 76
            I R++  L
Sbjct: 402 EIFRQIKAL 410


>gi|153815238|ref|ZP_01967906.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
 gi|145847497|gb|EDK24415.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 179 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 231


>gi|72388950|ref|XP_844770.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176057|gb|AAX70178.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801304|gb|AAZ11211.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328017|emb|CBH10994.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G +D K+A+   ++  + R +L         PK ILL GP G GKT I+R LAR  G  F
Sbjct: 85  GLEDVKKALIEHVKWPFTRPELFEGNTLRSHPKGILLYGPPGTGKTLIARALARELGCAF 144

Query: 82  IKV 84
           I V
Sbjct: 145 INV 147


>gi|24430155|ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens]
 gi|73947622|ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
           isoform 2 [Canis familiaris]
 gi|114677263|ref|XP_001140980.1| PREDICTED: 26S protease regulatory subunit 6B isoform 1 [Pan
           troglodytes]
 gi|291414123|ref|XP_002723310.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 2 [Oryctolagus
           cuniculus]
 gi|301776691|ref|XP_002923752.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 2
           [Ailuropoda melanoleuca]
 gi|332242481|ref|XP_003270414.1| PREDICTED: 26S protease regulatory subunit 6B isoform 2 [Nomascus
           leucogenys]
 gi|14714524|gb|AAH10396.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo
           sapiens]
 gi|119577332|gb|EAW56928.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform
           CRA_a [Homo sapiens]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|89053532|ref|YP_508983.1| ATPase AAA-2 [Jannaschia sp. CCS1]
 gi|88863081|gb|ABD53958.1| ATPase AAA-2 [Jannaschia sp. CCS1]
          Length = 785

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 18/105 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A+A +++         A LR+   P  N L  GPTGVGKT ++++LA
Sbjct: 477 LKRVVFGQDKAIEALASSIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 530

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
              G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 531 DTLGVELIRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGID 575


>gi|49476134|ref|YP_034175.1| cell division protein ftsH [Bartonella henselae str. Houston-1]
 gi|49238942|emb|CAF28238.1| Cell division protein ftsH [Bartonella henselae str. Houston-1]
          Length = 715

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|25742677|ref|NP_476463.1| 26S protease regulatory subunit 6B [Rattus norvegicus]
 gi|124248577|ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus]
 gi|2492517|sp|Q63570|PRS6B_RAT RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=Proteasome 26S subunit ATPase 4; Short=S6 ATPase;
           AltName: Full=Tat-binding protein 7; Short=TBP-7
 gi|1395186|dbj|BAA09340.1| proteasomal ATPase (Tat-binding protein7) [Rattus norvegicus]
 gi|15215225|gb|AAH12708.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus
           musculus]
 gi|26346368|dbj|BAC36835.1| unnamed protein product [Mus musculus]
 gi|38970025|gb|AAH63145.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Rattus
           norvegicus]
 gi|74141366|dbj|BAE35967.1| unnamed protein product [Mus musculus]
 gi|74150548|dbj|BAE32301.1| unnamed protein product [Mus musculus]
 gi|74188866|dbj|BAE39209.1| unnamed protein product [Mus musculus]
 gi|148692213|gb|EDL24160.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus
           musculus]
 gi|149056489|gb|EDM07920.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform
           CRA_a [Rattus norvegicus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|88854791|ref|ZP_01129457.1| cell division protein [marine actinobacterium PHSC20C1]
 gi|88815952|gb|EAR25808.1| cell division protein [marine actinobacterium PHSC20C1]
          Length = 667

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLLYGPPGTGKTLLAKATAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFEQA 251


>gi|291536774|emb|CBL09886.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279


>gi|256061729|ref|ZP_05451866.1| cell division protein FtsH [Brucella neotomae 5K33]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|221104647|ref|XP_002160802.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 470

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 47  IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 103


>gi|148559481|ref|YP_001259545.1| cell division protein FtsH [Brucella ovis ATCC 25840]
 gi|148370738|gb|ABQ60717.1| cell division protein FtsH [Brucella ovis ATCC 25840]
          Length = 649

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 741

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q   A L     PK ILLVGP G GKT ++R LA  AG  F     ++F E+ 
Sbjct: 326 LKNPKKYQDAGAKL-----PKGILLVGPPGTGKTLLARALAGEAGCSFYYKSGSEFDEM- 379

Query: 94  YVG 96
           +VG
Sbjct: 380 FVG 382


>gi|103485900|ref|YP_615461.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98975977|gb|ABF52128.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 862

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQQ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGRRVIGQQQAVQAVSKAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 621 EFMFGDERAMVRIDMSEFMEKHAVAR 646


>gi|152968278|ref|YP_001364062.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151362795|gb|ABS05798.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 840

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL + +IGQ DA +A++ A+R R R     A L+D   P  + +  GPTGVGKT +++ 
Sbjct: 511 AELHKRVIGQNDAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKA 564

Query: 73  LAR-LAGA--PFIKVEVTKFTEIGYVGR 97
           LA  L G     I++++++F+E   V R
Sbjct: 565 LAEFLFGEEDALIQLDMSEFSEKHTVSR 592


>gi|306844684|ref|ZP_07477269.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1]
 gi|306274856|gb|EFM56626.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|300721531|ref|YP_003710806.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
 gi|297628023|emb|CBJ88572.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|296116797|ref|ZP_06835403.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976598|gb|EFG83370.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 779

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+  A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 460 RSLERDLKGMVYGQDKAIEALTAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 514 VAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 564


>gi|227834051|ref|YP_002835758.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183463|ref|ZP_06042884.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455067|gb|ACP33820.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC
           700975]
          Length = 925

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 514 LKLTEKESNRLLNMEEELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 568 FAGPSGVGKTELSKSLA 584


>gi|218135109|ref|ZP_03463913.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990494|gb|EEC56505.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK +   +   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 183 RDVAGQDEAKESLTEIVDFLHNPDKYSHIGAKL-----PKGALLVGPPGTGKTLLAKAVA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 238 GEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 271


>gi|194385552|dbj|BAG65153.1| unnamed protein product [Homo sapiens]
          Length = 273

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 68  PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 109


>gi|33862722|ref|NP_894282.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9313]
 gi|54035808|sp|Q7V8B1|CLPB_PROMM RecName: Full=Chaperone protein ClpB
 gi|33634638|emb|CAE20624.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9313]
          Length = 865

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ+ A +AVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ 
Sbjct: 570 AELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     + A  ++++++++ E   V R
Sbjct: 624 LASQLFDSEAALVRIDMSEYMEKHSVSR 651


>gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
 gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
          Length = 765

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT ++R +A  AG PF  V   +F E+ Y G    + ++DL   A 
Sbjct: 251 VPKGVLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEM-YAGVAAAR-VQDLFSRAR 308

Query: 112 NIV 114
           N  
Sbjct: 309 NFA 311


>gi|298246220|ref|ZP_06970026.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297553701|gb|EFH87566.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 668

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 42/208 (20%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD--- 108
           +P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+  VG    + +RDL +   
Sbjct: 244 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFSMSGSEFVEV-LVGVGASR-VRDLFEQAK 301

Query: 109 -VAINIVRESRRDEVREQ--ASINAE---ERILDALVGKTATSNTREVF----------- 151
             A +I+     D V  Q  +SIN+    E+ L+ L+ +    +TR+             
Sbjct: 302 KAAPSIIFIDEIDAVGRQRGSSINSNDEREQTLNQLLVEMDGFDTRQAVVVIAATNRPDG 361

Query: 152 --RKKLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGS-- 202
             +  LR G   D+ + ++  D +       I + D+P  A V ++ ++     ++G+  
Sbjct: 362 LDKALLRPGRF-DRRVTVDRPDWNGRLAILKIHSRDVPLAADVDMITIARATPGMVGADL 420

Query: 203 ----------GRKKKIRMSVQKCYPELM 220
                       ++ +    Q+C+ E +
Sbjct: 421 ANLVNEAALLAARRNLDAVTQRCFEEAL 448


>gi|261222816|ref|ZP_05937097.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94]
 gi|265998775|ref|ZP_06111332.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1]
 gi|260921400|gb|EEX88053.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94]
 gi|262553464|gb|EEZ09233.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|213027550|ref|ZP_03341997.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|209875483|ref|XP_002139184.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209554790|gb|EEA04835.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 525

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L+    P+ ++SE D  +IG Q+ K+ +   + N  +R  L   L     P+ ILL GP 
Sbjct: 233 LSIRIRPKSLISEND--VIGLQEVKKMLRDKIINPIQRPDLHIGLHS--APRGILLFGPP 288

Query: 63  GVGKTAISRRLARLAGAPFIKV 84
           G GKT +++ +A    A F  V
Sbjct: 289 GTGKTMLAKWIANECKATFFDV 310


>gi|319899361|ref|YP_004159458.1| cell division protein FtsH [Bartonella clarridgeiae 73]
 gi|319403329|emb|CBI76888.1| cell division protein FtsH [Bartonella clarridgeiae 73]
          Length = 693

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|317502306|ref|ZP_07960475.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089910|ref|ZP_08338802.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896262|gb|EFV18364.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403142|gb|EGG82703.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 613

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 197 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 249


>gi|309389975|gb|ADO77855.1| membrane protease FtsH catalytic subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 633

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 VPKGVLMVGPPGTGKTLMAKAVAGEAGVPFYFISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|294634508|ref|ZP_06713043.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
 gi|291092022|gb|EFE24583.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
          Length = 657

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|297743224|emb|CBI36091.3| unnamed protein product [Vitis vinifera]
          Length = 904

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 470 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 513


>gi|206895236|ref|YP_002247205.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737853|gb|ACI16931.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 805

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAI 69
           EI   L R I+GQ +A  AVA A+R R R       L+D+  P  + L +GPTGVGKT +
Sbjct: 495 EIEDYLHRRIVGQNEAVTAVAKAIR-RSR-----TGLQDDRRPIGVFLFLGPTGVGKTEL 548

Query: 70  SRRLARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 549 ARALAEFMFGEEEALIRIDMSEYMEKFNVSRLV 581


>gi|194246437|ref|YP_002004076.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|310943087|sp|B3R057|FTSH1_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|193806794|emb|CAP18221.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 600

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG
Sbjct: 207 IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVG 250


>gi|194764699|ref|XP_001964466.1| GF23193 [Drosophila ananassae]
 gi|190614738|gb|EDV30262.1| GF23193 [Drosophila ananassae]
          Length = 405

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 159 VQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 213

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RDL  +A
Sbjct: 214 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 241


>gi|163869122|ref|YP_001610361.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
 gi|161018808|emb|CAK02366.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
          Length = 722

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|153008554|ref|YP_001369769.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151560442|gb|ABS13940.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|18401080|ref|NP_566541.1| EMB2083 (embryo defective 2083); ATP binding / ATP-dependent
           peptidase/ ATPase/ metalloendopeptidase/
           metallopeptidase/ nucleoside-triphosphatase/ nucleotide
           binding / serine-type endopeptidase [Arabidopsis
           thaliana]
 gi|332642273|gb|AEE75794.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 876

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 442 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 485


>gi|15966488|ref|NP_386841.1| metalloprotease transmembrane protein [Sinorhizobium meliloti 1021]
 gi|307300475|ref|ZP_07580255.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C]
 gi|307318340|ref|ZP_07597775.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83]
 gi|15075759|emb|CAC47314.1| Probable metalloprotease transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306896022|gb|EFN26773.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83]
 gi|306904641|gb|EFN35225.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|329961967|ref|ZP_08299978.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
 gi|328530615|gb|EGF57473.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
          Length = 739

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ +A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 455 IYGQDEAVRQVVEAV------QMSKAGLMDENKPLASLLFVGPTGVGKTEVAKVLATELG 508

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GY+G     ++ D +    N V
Sbjct: 509 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 555


>gi|281340746|gb|EFB16330.1| hypothetical protein PANDA_012963 [Ailuropoda melanoleuca]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 140 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 194

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 195 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 242


>gi|209550772|ref|YP_002282689.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536528|gb|ACI56463.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|195953047|ref|YP_002121337.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932659|gb|ACG57359.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 982

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 21/92 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           +IGQ DA  AVA A+R R R     A L+D   P  + L +GPTGVGKT +S+ LA L  
Sbjct: 687 VIGQDDAVVAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKALAELLF 740

Query: 79  A---PFIKVEVTKFTE-----------IGYVG 96
                 I++++++F E            GYVG
Sbjct: 741 GEEDALIRLDMSEFKEEHTVSKLIGAPPGYVG 772


>gi|108755190|emb|CAK32582.1| putative ATP-dependent Zn protease [uncultured organism]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 LPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|91089723|ref|XP_975024.1| PREDICTED: similar to no mitochondrial derivative CG5395-PA
           [Tribolium castaneum]
 gi|270011311|gb|EFA07759.1| hypothetical protein TcasGA2_TC005313 [Tribolium castaneum]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           +R++L AD +    P+ +LL GP G GKT I++  A+ AG  FI ++++  T+  Y
Sbjct: 113 QRKELFADSQLTTAPRGVLLHGPPGCGKTLIAKATAKEAGTRFINLDLSILTDKWY 168


>gi|148229003|ref|NP_001083300.1| proteasome 26S ATPase subunit 4 isoform 1 [Xenopus laevis]
 gi|37994750|gb|AAH60362.1| Psmc4 protein [Xenopus laevis]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT +  P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +L+ GP 
Sbjct: 156 LTADQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPP 210

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 211 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|83774711|dbj|BAE64834.1| unnamed protein product [Aspergillus oryzae]
          Length = 394

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 123 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 176

Query: 113 IVRE 116
           + R+
Sbjct: 177 LARK 180


>gi|330993781|ref|ZP_08317713.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329759049|gb|EGG75561.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 775

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+  A++         A LRD   P  N L  GPTGVGKT 
Sbjct: 457 RSLERDLKGMVYGQDKAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 510

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 511 VAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 561


>gi|327285994|ref|XP_003227716.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 2
           [Anolis carolinensis]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|269101906|ref|ZP_06154603.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161804|gb|EEZ40300.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 857

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHRRVIGQNEAVEAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|302530766|ref|ZP_07283108.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
 gi|302439661|gb|EFL11477.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
          Length = 849

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 511 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|256852016|ref|ZP_05557403.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661415|ref|ZP_05862328.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
 gi|256615428|gb|EEU20618.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547870|gb|EEX23847.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
          Length = 715

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 229 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 285


>gi|284037881|ref|YP_003387811.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
 gi|283817174|gb|ADB39012.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
          Length = 676

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 230 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 286


>gi|238899016|ref|YP_002924698.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466776|gb|ACQ68550.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 21/101 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E VSEL +Y              LR   R Q+L   +     P  ILLVGP G GKT +
Sbjct: 161 KEEVSELVQY--------------LREPGRFQKLGGKI-----PTGILLVGPPGTGKTLL 201

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 202 AKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFEKA 240


>gi|262200860|ref|YP_003272068.1| ATPase AAA [Gordonia bronchialis DSM 43247]
 gi|262084207|gb|ACY20175.1| ATPase AAA-2 domain protein [Gordonia bronchialis DSM 43247]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|242309032|ref|ZP_04808187.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT
           98-5489]
 gi|239524456|gb|EEQ64322.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT
           98-5489]
          Length = 574

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LLVGP GVGKT I++ LA  A  PF       F +I Y G   +++        +
Sbjct: 208 LPRGVLLVGPPGVGKTLIAKALAGEAKVPFFYQSGASFVQI-YAGMGAKRVHDLFTKAKL 266

Query: 112 NI 113
           N+
Sbjct: 267 NV 268


>gi|91794212|ref|YP_563863.1| ATPase AAA-2 [Shewanella denitrificans OS217]
 gi|91716214|gb|ABE56140.1| ATPase AAA-2 [Shewanella denitrificans OS217]
          Length = 862

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMESALHERVIGQSEAVEAVSNAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
            + LA+      A  +++++++F E   V R V
Sbjct: 615 CKSLAKFLFDTEAALVRIDMSEFMEKHSVSRLV 647


>gi|51599040|ref|YP_073228.1| cell division protein [Borrelia garinii PBi]
 gi|51573611|gb|AAU07636.1| cell division protein [Borrelia garinii PBi]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|21673136|ref|NP_661201.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646212|gb|AAM71543.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 241 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 297


>gi|49474666|ref|YP_032708.1| cell division protein ftsH [Bartonella quintana str. Toulouse]
 gi|49240170|emb|CAF26634.1| Cell division protein ftsH [Bartonella quintana str. Toulouse]
          Length = 717

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|116519|sp|P05444|CLPA_RHOBL RecName: Full=ClpA homolog protein
 gi|45972|emb|CAA77308.1| URF 2 [Rhodobacter blasticus]
          Length = 793

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L R + GQ  A  A++ +++         A LR+   P  N L  GPTGVGKT 
Sbjct: 480 RDLERTLKRLVFGQDKAIEALSASIKLAR------AGLREPEKPIGNYLFTGPTGVGKTE 533

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 534 VAKQLAATLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 590


>gi|319407717|emb|CBI81365.1| cell division protein FtsH [Bartonella sp. 1-1C]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|298491770|ref|YP_003721947.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298233688|gb|ADI64824.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGSPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261


>gi|261325733|ref|ZP_05964930.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33]
 gi|261301713|gb|EEY05210.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|239832778|ref|ZP_04681107.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG
           3301]
 gi|239825045|gb|EEQ96613.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG
           3301]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|238855043|ref|ZP_04645371.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260664827|ref|ZP_05865678.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|282934829|ref|ZP_06340063.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313472619|ref|ZP_07813108.1| cell division protein FtsH [Lactobacillus jensenii 1153]
 gi|238832287|gb|EEQ24596.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260561310|gb|EEX27283.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301101|gb|EFA93411.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313448962|gb|EEQ68431.2| cell division protein FtsH [Lactobacillus jensenii 1153]
          Length = 708

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|219684938|ref|ZP_03539879.1| cell division protein FtsH [Borrelia garinii PBr]
 gi|219671676|gb|EED28732.1| cell division protein FtsH [Borrelia garinii PBr]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|145640973|ref|ZP_01796555.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274487|gb|EDK14351.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 708

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 417 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 470

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 471 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 499


>gi|110834146|ref|YP_693005.1| ATP-dependent Clp protease, ATP-binding subunitclpa [Alcanivorax
           borkumensis SK2]
 gi|110647257|emb|CAL16733.1| ATP-dependent Clp protease, ATP-binding subunitClpA [Alcanivorax
           borkumensis SK2]
          Length = 755

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E++  L+R     + GQ +A   ++ A++         A L+ E  P  + +  GPT
Sbjct: 446 SDKELLRNLERDLKMTVFGQDEAIDTISAAIKLSR------AGLKGEHKPIGSFMFAGPT 499

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT +SR+LAR  G   ++ +++++ E   V R
Sbjct: 500 GVGKTEVSRQLARALGVELVRFDMSEYMERHTVSR 534


>gi|77360664|ref|YP_340239.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875575|emb|CAI86796.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 753

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E +  LDR     + GQ  +  A+  A+R         + L +E  P  + L  GPT
Sbjct: 446 SDKETLKNLDRNLKMLVFGQDQSIDALTSAIRLSR------SGLANEEKPVGSFLFAGPT 499

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++++LA+  G  FI+ +++++ E   + R
Sbjct: 500 GVGKTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534


>gi|54022379|ref|YP_116621.1| putative Clp protease [Nocardia farcinica IFM 10152]
 gi|54013887|dbj|BAD55257.1| putative Clp protease [Nocardia farcinica IFM 10152]
          Length = 851

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  A 74
           A
Sbjct: 564 A 564


>gi|300859188|ref|YP_003784171.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686642|gb|ADK29564.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331444|gb|ADL21638.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis 1002]
          Length = 885

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 565 FAGPSGVGKTELSKALA 581


>gi|289740993|gb|ADD19244.1| AAA+-type ATPase [Glossina morsitans morsitans]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E ++ LD  I   Q+ + +V + +R+R     L +  +    PK +LL GP G GKT I+
Sbjct: 97  EDIAGLDNVI---QELRESVVLPVRHR----GLLSHSKLWQAPKGVLLHGPPGCGKTLIA 149

Query: 71  RRLARLAGAPFIKVEVTKFTEIGY 94
           +  A+ AG  FI ++V+  T+  Y
Sbjct: 150 KATAKEAGMRFINLDVSMLTDKWY 173


>gi|284006662|emb|CBA71924.1| ATP-dependent metalloprotease [Arsenophonus nasoniae]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|305680627|ref|ZP_07403435.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660158|gb|EFM49657.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium matruchotii ATCC 14266]
          Length = 890

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 514 FKLTEEESSRLLNMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 568 FAGPSGVGKTELSKALA 584


>gi|238810162|dbj|BAH69952.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 708

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP  ILL GPTG GKT +++  A  A  PF  +  + F E+ YVG   +++
Sbjct: 252 MPHGILLGGPTGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRV 301


>gi|225022124|ref|ZP_03711316.1| hypothetical protein CORMATOL_02157 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945057|gb|EEG26266.1| hypothetical protein CORMATOL_02157 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 890

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 514 FKLTEEESSRLLNMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 568 FAGPSGVGKTELSKALA 584


>gi|222149667|ref|YP_002550624.1| metalloprotease [Agrobacterium vitis S4]
 gi|221736649|gb|ACM37612.1| metalloprotease [Agrobacterium vitis S4]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 229 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 285


>gi|195330288|ref|XP_002031836.1| GM26216 [Drosophila sechellia]
 gi|194120779|gb|EDW42822.1| GM26216 [Drosophila sechellia]
          Length = 389

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 143 IQKQEVREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 198 FIRVVGSEFVQ-KYLGEG-PRMVRDIFRLA 225


>gi|163845271|ref|YP_001622926.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445]
 gi|163675994|gb|ABY40104.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|168015662|ref|XP_001760369.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688383|gb|EDQ74760.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 18/119 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ IL+ GP G GKT ++R +AR +G PF+     +F E    G   ++I         
Sbjct: 161 LPRGILISGPPGTGKTLLARAIARESGLPFVFASGAEFVE-SSTGNGSDKIFDIFFTARA 219

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNT--REVFRKKLR--DGEISDKEID 166
           N       DE+             DAL GK    +   R  F++ L   DGE  D +++
Sbjct: 220 NAPSFVFIDEI-------------DALAGKNVNDDAERRATFQQLLAELDGEPDDTDVN 265


>gi|1709797|sp|P54775|PRS6B_MOUSE RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName: Full=CIP21;
           AltName: Full=MB67-interacting protein; AltName:
           Full=MIP224; AltName: Full=Proteasome 26S subunit ATPase
           4; AltName: Full=Tat-binding protein 7; Short=TBP-7
 gi|1196528|gb|AAA88243.1| ATPase [Mus musculus]
 gi|10697240|dbj|BAB16348.1| proteasomal ATPase [Mus musculus]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|291520389|emb|CBK75610.1| C-terminal, D2-small domain, of ClpB protein./AAA domain (Cdc48
           subfamily) [Butyrivibrio fibrisolvens 16/4]
          Length = 505

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R+I S L + +IGQ++A  AVA A+R R R       L+++  P  + L +GPTGVGKT 
Sbjct: 197 RKIESVLHKRVIGQEEAVSAVARAVR-RGR-----VGLKEKGRPIGSFLFLGPTGVGKTE 250

Query: 69  ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           IS+ LA       +  I+V+++++ E            GYVG
Sbjct: 251 ISKALAEAVFGTESSMIRVDMSEYMEKHSVSKMIGSPPGYVG 292


>gi|269137757|ref|YP_003294457.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|267983417|gb|ACY83246.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|304557814|gb|ADM40478.1| Cell division protein FtsH [Edwardsiella tarda FL6-60]
          Length = 646

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|300023923|ref|YP_003756534.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525744|gb|ADJ24213.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 IPRGCLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|161619621|ref|YP_001593508.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365]
 gi|256370100|ref|YP_003107611.1| cell division protein FtsH [Brucella microti CCM 4915]
 gi|260568778|ref|ZP_05839246.1| FtsH protein [Brucella suis bv. 4 str. 40]
 gi|261219281|ref|ZP_05933562.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1]
 gi|261315941|ref|ZP_05955138.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M163/99/10]
 gi|261316197|ref|ZP_05955394.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94]
 gi|261322342|ref|ZP_05961539.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1]
 gi|261750847|ref|ZP_05994556.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513]
 gi|261754100|ref|ZP_05997809.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686]
 gi|261757345|ref|ZP_06001054.1| cell division protein [Brucella sp. F5/99]
 gi|265984709|ref|ZP_06097444.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13]
 gi|265987260|ref|ZP_06099817.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M292/94/1]
 gi|294850944|ref|ZP_06791620.1| cell division protease FtsH [Brucella sp. NVSL 07-0026]
 gi|306837847|ref|ZP_07470709.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653]
 gi|161336432|gb|ABX62737.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365]
 gi|256000263|gb|ACU48662.1| cell division protein FtsH [Brucella microti CCM 4915]
 gi|260154162|gb|EEW89244.1| FtsH protein [Brucella suis bv. 4 str. 40]
 gi|260924370|gb|EEX90938.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1]
 gi|261295032|gb|EEX98528.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1]
 gi|261295420|gb|EEX98916.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94]
 gi|261304967|gb|EEY08464.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M163/99/10]
 gi|261737329|gb|EEY25325.1| cell division protein [Brucella sp. F5/99]
 gi|261740600|gb|EEY28526.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513]
 gi|261743853|gb|EEY31779.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686]
 gi|264659457|gb|EEZ29718.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M292/94/1]
 gi|264663301|gb|EEZ33562.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13]
 gi|294821587|gb|EFG38583.1| cell division protease FtsH [Brucella sp. NVSL 07-0026]
 gi|306407086|gb|EFM63303.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVGP G GKT ++R LA  AG  F     ++F E+ +VG
Sbjct: 249 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 292


>gi|110680700|ref|YP_683707.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter denitrificans OCh 114]
 gi|109456816|gb|ABG33021.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter denitrificans OCh 114]
          Length = 773

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|91202702|emb|CAJ72341.1| strongly similar to ATP-dependent zinc-metalloprotease ftsH
           involved in cell division [Candidatus Kuenenia
           stuttgartiensis]
          Length = 620

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 198 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFNMSGSEFVEM-FVGVGAAR-VRDLFNQA 254


>gi|62290563|ref|YP_222356.1| cell division protein FtsH FtsH [Brucella abortus bv. 1 str. 9-941]
 gi|82700479|ref|YP_415053.1| peptidase M41 [Brucella melitensis biovar Abortus 2308]
 gi|189024783|ref|YP_001935551.1| FtsH, cell division protein FtsH [Brucella abortus S19]
 gi|260547192|ref|ZP_05822930.1| FtsH protein [Brucella abortus NCTC 8038]
 gi|260755391|ref|ZP_05867739.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str.
           870]
 gi|260758612|ref|ZP_05870960.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str.
           292]
 gi|260884407|ref|ZP_05896021.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str.
           C68]
 gi|62196695|gb|AAX74995.1| FtsH, cell division protein FtsH [Brucella abortus bv. 1 str.
           9-941]
 gi|82616580|emb|CAJ11659.1| Peptidase M41:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA
           ATPase, central region:AAA-protein
           subdomain:ATP-dependent [Brucella melitensis biovar
           Abortus 2308]
 gi|189020355|gb|ACD73077.1| FtsH, cell division protein FtsH [Brucella abortus S19]
 gi|260095557|gb|EEW79435.1| FtsH protein [Brucella abortus NCTC 8038]
 gi|260668930|gb|EEX55870.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str.
           292]
 gi|260675499|gb|EEX62320.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str.
           870]
 gi|260873935|gb|EEX81004.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str.
           C68]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|330835879|ref|YP_004410607.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4]
 gi|329568018|gb|AEB96123.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           Q+ K  V + L+    R +L  DL   + PK +LL GP G GKT +++ +A  + A FI 
Sbjct: 143 QEIKEVVELPLK----RPELFKDL-GIIPPKGVLLYGPPGTGKTMLAKAVATESKAAFIH 197

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           V  ++F +  +VG    +++RDL ++A
Sbjct: 198 VVASEFAQ-KFVGEGA-RVVRDLFELA 222


>gi|308277132|gb|ADO27031.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 885

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 565 FAGPSGVGKTELSKALA 581


>gi|307822306|ref|ZP_07652538.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter
           tundripaludum SV96]
 gi|307736872|gb|EFO07717.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter
           tundripaludum SV96]
          Length = 757

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLA 74
           L   + GQ +A  A+A A++         A LRD +    + L  GPTGVGKT ++R+LA
Sbjct: 457 LKMLVFGQDEAISALASAIKLSR------AGLRDTQKTIGSFLFAGPTGVGKTEVTRQLA 510

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
           ++ G   I+ +++++ E   V R
Sbjct: 511 KVLGVELIRFDMSEYMERHTVSR 533


>gi|307719021|ref|YP_003874553.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
 gi|306532746|gb|ADN02280.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 9/61 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73
           L R +IGQ++A RAVA A+R NR       + L D   P  + L +GPTGVGKT ++R L
Sbjct: 573 LGRRVIGQEEAIRAVADAIRRNR-------SGLSDPRRPMGVFLFLGPTGVGKTELARTL 625

Query: 74  A 74
           A
Sbjct: 626 A 626


>gi|302206878|gb|ADL11220.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis C231]
          Length = 885

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 565 FAGPSGVGKTELSKALA 581


>gi|256045302|ref|ZP_05448196.1| cell division protein FtsH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114260|ref|ZP_05455005.1| cell division protein FtsH [Brucella melitensis bv. 3 str. Ether]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|238918418|ref|YP_002931932.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
 gi|238867986|gb|ACR67697.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
          Length = 649

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|237816069|ref|ZP_04595065.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A]
 gi|254689860|ref|ZP_05153114.1| cell division protein FtsH [Brucella abortus bv. 6 str. 870]
 gi|254730895|ref|ZP_05189473.1| cell division protein FtsH [Brucella abortus bv. 4 str. 292]
 gi|256258114|ref|ZP_05463650.1| cell division protein FtsH [Brucella abortus bv. 9 str. C68]
 gi|237788732|gb|EEP62944.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|282933688|ref|ZP_06339046.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297205112|ref|ZP_06922508.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
 gi|281302178|gb|EFA94422.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297149690|gb|EFH29987.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
          Length = 711

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|169627650|ref|YP_001701299.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           abscessus ATCC 19977]
 gi|169239617|emb|CAM60645.1| Probable ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium abscessus]
          Length = 844

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPRRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|154508553|ref|ZP_02044195.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798187|gb|EDN80607.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    + +R+L + A
Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264


>gi|120406306|ref|YP_956135.1| ATPase [Mycobacterium vanbaalenii PYR-1]
 gi|119959124|gb|ABM16129.1| ATPase AAA-2 domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|4336198|gb|AAD17691.1| ATP-dependent protease ClpE [Listeria monocytogenes]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 21/92 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 434 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 487

Query: 78  GA--PFIKVEVTKFTE-----------IGYVG 96
           G    +I++++++F E            GYVG
Sbjct: 488 GTSEAWIRLDMSEFMEKHSISKLIGSPPGYVG 519


>gi|71066293|ref|YP_265020.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus
           273-4]
 gi|71039278|gb|AAZ19586.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus
           273-4]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|23502549|ref|NP_698676.1| cell division protein FtsH [Brucella suis 1330]
 gi|23348549|gb|AAN30591.1| cell division protein FtsH [Brucella suis 1330]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|326539412|gb|ADZ87627.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M5-90]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|297248963|ref|ZP_06932671.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196]
 gi|297174096|gb|EFH33453.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|298292990|ref|YP_003694929.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
 gi|296929501|gb|ADH90310.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|291234534|ref|XP_002737206.1| PREDICTED: fidgetin-like protein 1-like [Saccoglossus kowalevskii]
          Length = 687

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 446 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 501


>gi|255027682|ref|ZP_05299668.1| ATP-dependent protease [Listeria monocytogenes FSL J2-003]
          Length = 439

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 152 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 205

Query: 78  GA--PFIKVEVTKFTE-----------IGYVGR 97
           G     I++++++F E            GYVG 
Sbjct: 206 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 238


>gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
 gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|207109416|ref|ZP_03243578.1| cell division protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 49  IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 105


>gi|163732301|ref|ZP_02139747.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter litoralis Och 149]
 gi|161394599|gb|EDQ18922.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter litoralis Och 149]
          Length = 773

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|148653389|ref|YP_001280482.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Psychrobacter
           sp. PRwf-1]
 gi|148572473|gb|ABQ94532.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           sp. PRwf-1]
          Length = 854

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 18/94 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L+R + GQ +A + ++ A++    R    A L+    P  + +  GPTGVGKT +S++L
Sbjct: 534 DLNRLVFGQDEAIKTLSDAIK--LSR----AGLKSADKPIGSFMFAGPTGVGKTEVSKQL 587

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVG 96
           A L G   I+ +++++ E            GYVG
Sbjct: 588 ANLMGIELIRFDMSEYMEAHTASRLIGAPPGYVG 621


>gi|39794661|gb|AAH63530.1| ATAD1 protein [Homo sapiens]
          Length = 330

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 95  PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 136


>gi|93006844|ref|YP_581281.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis
           K5]
 gi|92394522|gb|ABE75797.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis
           K5]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|327285992|ref|XP_003227715.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 1
           [Anolis carolinensis]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|325526643|gb|EGD04184.1| cell division protease [Burkholderia sp. TJI49]
          Length = 494

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|320451090|ref|YP_004203186.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
 gi|320151259|gb|ADW22637.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
          Length = 861

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ++A RAVA A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 562 ELHKRVVGQEEAIRAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTL 615

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          +++++T++ E   V R
Sbjct: 616 AATLFDTEEAMVRIDMTEYMEKHAVSR 642


>gi|306841410|ref|ZP_07474112.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2]
 gi|306288516|gb|EFM59868.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2]
          Length = 594

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 139 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 195


>gi|285025947|dbj|BAI67908.1| ClpB protein [Acetobacter pasteurianus]
          Length = 871

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 569 ELRKSVVGQEQALKAVSDAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         +++++++F E   V R
Sbjct: 623 ARFLFDDDKALLRIDMSEFMEKHAVAR 649


>gi|156386834|ref|XP_001634116.1| predicted protein [Nematostella vectensis]
 gi|156221195|gb|EDO42053.1| predicted protein [Nematostella vectensis]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  F+ ++V+  T+  Y
Sbjct: 118 PKGVLLHGPPGCGKTMIAKATAKEAGCRFLNLQVSSLTDKWY 159


>gi|331090013|ref|ZP_08338903.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402927|gb|EGG82493.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 213 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 267

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 268 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 301


>gi|319777781|ref|YP_004137432.1| cell division protein ftsh [Mycoplasma fermentans M64]
 gi|318038856|gb|ADV35055.1| Cell division protein FtsH [Mycoplasma fermentans M64]
          Length = 697

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP  ILL GPTG GKT +++  A  A  PF  +  + F E+ YVG   +++
Sbjct: 241 MPHGILLGGPTGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRV 290


>gi|293191262|ref|ZP_06609169.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
 gi|292820587|gb|EFF79557.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    + +R+L + A
Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264


>gi|292493674|ref|YP_003529113.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291582269|gb|ADE16726.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFENA 241


>gi|237752882|ref|ZP_04583362.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375149|gb|EEO25240.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 555

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  GVGKT I++ LA  A  PF       F +I YVG   ++ +RDL
Sbjct: 191 LPKGVLLVGVPGVGKTLIAKALAGEAQVPFFYQSGASFVQI-YVGMGAKR-VRDL 243


>gi|188588998|ref|YP_001922412.1| putative cell division protease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499279|gb|ACD52415.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 698

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L    R  ++ A L     PK  LLVGP G GKT I++ +A  
Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
           A  PF  +  + F E  +G     V ++ ++ V  A  I+
Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCII 266


>gi|153805576|ref|YP_001382152.1| cell division protein [Leptosira terrestris]
 gi|134270107|gb|ABO69296.1| cell division protein [Leptosira terrestris]
          Length = 2570

 Score = 43.9 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 40   RQQLPADLRDELM----------PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
            + Q   + R+ELM          PK ILL GP G+GKT +SR LA  AG P I      F
Sbjct: 1769 KNQRQINKREELMHMKHSINFIVPKAILLTGPPGIGKTYLSRALAAEAGVPIISRSGGDF 1828

Query: 90   TE 91
            T+
Sbjct: 1829 TK 1830


>gi|154483319|ref|ZP_02025767.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC
           27560]
 gi|149735829|gb|EDM51715.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC
           27560]
          Length = 607

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILL GP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 183 IPKGILLEGPPGTGKTLLAKATAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 235


>gi|118472509|ref|YP_890312.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173796|gb|ABK74692.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
           smegmatis str. MC2 155]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|21740032|emb|CAD39033.1| hypothetical protein [Homo sapiens]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 80  PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 121


>gi|17986626|ref|NP_539260.1| cell division protein FTSH [Brucella melitensis bv. 1 str. 16M]
 gi|17982240|gb|AAL51524.1| cell division protein ftsh [Brucella melitensis bv. 1 str. 16M]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|225853147|ref|YP_002733380.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457]
 gi|265991727|ref|ZP_06104284.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995564|ref|ZP_06108121.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999343|ref|ZP_05465893.2| FtsH [Brucella melitensis bv. 2 str. 63/9]
 gi|225641512|gb|ACO01426.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457]
 gi|262766848|gb|EEZ12466.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002683|gb|EEZ15086.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093360|gb|EEZ17429.1| FtsH [Brucella melitensis bv. 2 str. 63/9]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|225442523|ref|XP_002278786.1| PREDICTED: similar to cell division protein FtsH-like [Vitis
           vinifera]
          Length = 888

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 454 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 497


>gi|254429405|ref|ZP_05043112.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax
           sp. DG881]
 gi|196195574|gb|EDX90533.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax
           sp. DG881]
          Length = 754

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E++  L+R     + GQ +A   ++ A++         A L+ E  P  + +  GPT
Sbjct: 445 SDKELLRNLERDLKMTVFGQDEAIDTISAAIKLSR------AGLKGEHKPIGSFMFAGPT 498

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT +SR+LAR  G   ++ +++++ E   V R
Sbjct: 499 GVGKTEVSRQLARALGVELVRFDMSEYMERHTVSR 533


>gi|183985068|ref|YP_001853359.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           marinum M]
 gi|183178394|gb|ACC43504.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           marinum M]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|78358454|ref|YP_389903.1| FtsH-2 peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220859|gb|ABB40208.1| membrane protease FtsH catalytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 189 IPKGVLLAGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245


>gi|15827032|ref|NP_301295.1| ATP-dependent Clp protease [Mycobacterium leprae TN]
 gi|221229510|ref|YP_002502926.1| putative ATP-dependent Clp protease [Mycobacterium leprae Br4923]
 gi|13432105|sp|P24428|CLPC_MYCLE RecName: Full=Probable ATP-dependent Clp protease ATP-binding
           subunit
 gi|13092579|emb|CAC29743.1| putative ATP-dependent Clp protease [Mycobacterium leprae]
 gi|219932617|emb|CAR70328.1| putative ATP-dependent Clp protease [Mycobacterium leprae Br4923]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|66362372|ref|XP_628150.1| AFG1 ATpase family AAA ATpase  [Cryptosporidium parvum Iowa II]
 gi|46227382|gb|EAK88317.1| predicted AFG1 ATpase family AAA ATpase [Cryptosporidium parvum
           Iowa II]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G ++AK+ +      L++  R Q L A +     PK  LLVGP G GKT +++ +A  
Sbjct: 261 IAGMKEAKQEIYELVEFLKDPKRFQDLGAKI-----PKGALLVGPPGTGKTLLAKAVAGE 315

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F EI +VG    + +R+L   A
Sbjct: 316 ANVPFFYISGSDFIEI-FVGMGASR-VRELFSQA 347


>gi|326409705|gb|ADZ66770.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M28]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|315446238|ref|YP_004079117.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
           sp. Spyr1]
 gi|315264541|gb|ADU01283.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
           sp. Spyr1]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|325678810|ref|ZP_08158408.1| ATPase, AAA family [Ruminococcus albus 8]
 gi|324109314|gb|EGC03532.1| ATPase, AAA family [Ruminococcus albus 8]
          Length = 776

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 20/101 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  E+ + IIGQ++A   VA A++ R R Q     L     P + + VGPTGVGKT +
Sbjct: 477 RNLKDEMSKRIIGQEEAVDKVAKAIK-RTRVQ-----LDKRRRPASFIFVGPTGVGKTEL 530

Query: 70  SRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
            + L      A  P I+++++++ E            GYVG
Sbjct: 531 VKVLGESLFDATEPLIRIDMSEYMEKHSVSKLIGSPPGYVG 571


>gi|289763775|ref|ZP_06523153.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis GM 1503]
 gi|289711281|gb|EFD75297.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis GM 1503]
          Length = 686

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|217031507|ref|ZP_03437012.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128]
 gi|216946707|gb|EEC25303.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128]
          Length = 550

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            +PK +LL+GP GVGKT I++ LA  A  PF      +F +  + GR  +++
Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYEAGARFLKFMW-GRGAKKV 243


>gi|310946929|sp|Q4A5F0|FTSH_MYCS5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|144575198|gb|AAZ44021.2| cell division protein FtsH [Mycoplasma synoviae 53]
          Length = 664

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           L+N  + QQ  A      MP  ILL GP G GKT +++  A  A  PF  V  + F E  
Sbjct: 208 LKNPGKYQQSGAR-----MPHGILLGGPPGTGKTLLAKATAGEANVPFYFVSASSFVELF 262

Query: 92  IGYVGRNVEQIIRD 105
           +G   + V Q+I +
Sbjct: 263 VGMGAKRVRQVISE 276


>gi|283850232|ref|ZP_06367521.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
 gi|283574258|gb|EFC22229.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
          Length = 691

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237


>gi|240172840|ref|ZP_04751499.1| ClpC [Mycobacterium kansasii ATCC 12478]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|189184490|ref|YP_001938275.1| FtsH protein [Orientia tsutsugamushi str. Ikeda]
 gi|189181261|dbj|BAG41041.1| FtsH protein [Orientia tsutsugamushi str. Ikeda]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q+L   +     PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAGEANVPFFHISGSNFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|154505541|ref|ZP_02042279.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149]
 gi|153794199|gb|EDN76619.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149]
          Length = 606

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 248


>gi|124023532|ref|YP_001017839.1| ATP-dependent Clp protease Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963818|gb|ABM78574.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9303]
          Length = 863

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ+ A +AVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ 
Sbjct: 570 AELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     + A  ++++++++ E   V R
Sbjct: 624 LASQLFDSEAALVRIDMSEYMEKHSVSR 651


>gi|118466434|ref|YP_879836.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
           avium 104]
 gi|254773513|ref|ZP_05215029.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167721|gb|ABK68618.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
           avium 104]
          Length = 822

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 492 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 545

Query: 74  A 74
           A
Sbjct: 546 A 546


>gi|308232509|ref|ZP_07416289.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu001]
 gi|308371394|ref|ZP_07424826.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu003]
 gi|308372592|ref|ZP_07429192.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu004]
 gi|308373956|ref|ZP_07434280.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu006]
 gi|308374925|ref|ZP_07442106.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu007]
 gi|308376170|ref|ZP_07437892.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu008]
 gi|308378380|ref|ZP_07482390.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu009]
 gi|308379552|ref|ZP_07486731.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu010]
 gi|308380740|ref|ZP_07490948.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu011]
 gi|308213724|gb|EFO73123.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu001]
 gi|308328891|gb|EFP17742.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu003]
 gi|308332729|gb|EFP21580.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu004]
 gi|308343544|gb|EFP32395.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu006]
 gi|308348011|gb|EFP36862.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351952|gb|EFP40803.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu008]
 gi|308352738|gb|EFP41589.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu009]
 gi|308356587|gb|EFP45438.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu010]
 gi|308360544|gb|EFP49395.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu011]
          Length = 827

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 492 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 545

Query: 74  A 74
           A
Sbjct: 546 A 546


>gi|302342199|ref|YP_003806728.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
 gi|301638812|gb|ADK84134.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 194 IPKGVLLVGSPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 246


>gi|300790533|ref|YP_003770824.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amycolatopsis
           mediterranei U32]
 gi|299800047|gb|ADJ50422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amycolatopsis
           mediterranei U32]
          Length = 831

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 490 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 543

Query: 74  A 74
           A
Sbjct: 544 A 544


>gi|291550705|emb|CBL26967.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 254 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 310


>gi|302527020|ref|ZP_07279362.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
 gi|302435915|gb|EFL07731.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
          Length = 831

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 511 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|118619352|ref|YP_907684.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           ulcerans Agy99]
 gi|118571462|gb|ABL06213.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           ulcerans Agy99]
          Length = 849

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|126437706|ref|YP_001073397.1| ATPase [Mycobacterium sp. JLS]
 gi|126237506|gb|ABO00907.1| ATPase AAA-2 domain protein [Mycobacterium sp. JLS]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|108801719|ref|YP_641916.1| ATPase AAA-2 [Mycobacterium sp. MCS]
 gi|119870870|ref|YP_940822.1| ATPase [Mycobacterium sp. KMS]
 gi|108772138|gb|ABG10860.1| ATPase AAA-2 [Mycobacterium sp. MCS]
 gi|119696959|gb|ABL94032.1| ATPase AAA-2 domain protein [Mycobacterium sp. KMS]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|145222022|ref|YP_001132700.1| ATPase [Mycobacterium gilvum PYR-GCK]
 gi|145214508|gb|ABP43912.1| ATPase AAA-2 domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|312869843|ref|ZP_07729984.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
 gi|311094622|gb|EFQ52925.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
          Length = 709

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 281


>gi|257057497|ref|YP_003135329.1| ATPase with chaperone activity, ATP-binding subunit
           [Saccharomonospora viridis DSM 43017]
 gi|256587369|gb|ACU98502.1| ATPase with chaperone activity, ATP-binding subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 851

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  A 74
           A
Sbjct: 564 A 564


>gi|212550944|ref|YP_002309261.1| cell division protease FtsH [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549182|dbj|BAG83850.1| cell division protease FtsH [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 654

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 227 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDLFHQA 283


>gi|255936031|ref|XP_002559042.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583662|emb|CAP91677.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   +
Sbjct: 146 PSGVLLYGPPGCGKTMLAKALASESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199

Query: 113 IVRE 116
           + R+
Sbjct: 200 LARK 203


>gi|170591739|ref|XP_001900627.1| YME1 protein homolog [Brugia malayi]
 gi|158591779|gb|EDP30382.1| YME1 protein homolog, putative [Brugia malayi]
          Length = 673

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 17/95 (17%)

Query: 22  GQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA---- 74
           G  +AK   R +   LR+  R  QL A L     PK +LLVGP G GKT +++ +A    
Sbjct: 188 GADEAKNELRGIVSYLRDPERYTQLGARL-----PKGVLLVGPPGTGKTLLAKAIAVVSV 242

Query: 75  ---RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
              +    PF +   ++F E+ +VG+   + +RDL
Sbjct: 243 SIQKAPAVPFFQASGSEFDEL-FVGQGARR-VRDL 275


>gi|156845993|ref|XP_001645885.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116555|gb|EDO18027.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+ GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL   A
Sbjct: 290 LPKGILITGPPGTGKTLLARATAGEAGVKFFMMSGSEFDEV-YVGVGAKR-IRDLFTEA 346


>gi|89064750|ref|XP_947602.1| PREDICTED: 26S protease regulatory subunit 6B-like [Homo sapiens]
          Length = 414

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 148 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 202

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 203 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 250


>gi|332185365|ref|ZP_08387113.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
 gi|332014343|gb|EGI56400.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
          Length = 859

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           +IGQ+DA RAV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA    
Sbjct: 571 VIGQEDAVRAVSTAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALAEFLF 624

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
              +  +++++++F E   V R
Sbjct: 625 DDPSAMVRLDMSEFMEKHSVAR 646


>gi|288940240|ref|YP_003442480.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
 gi|288895612|gb|ADC61448.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 187 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 243


>gi|239907210|ref|YP_002953951.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
 gi|239797076|dbj|BAH76065.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237


>gi|110633726|ref|YP_673934.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Mesorhizobium
           sp. BNC1]
 gi|110284710|gb|ABG62769.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Chelativorans
           sp. BNC1]
          Length = 819

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R + GQ  A  A+A A++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 468 TELKRVVYGQDKAIEALASAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQ 521

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 522 LAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574


>gi|312795599|ref|YP_004028521.1| cell division protein ftsH [Burkholderia rhizoxinica HKI 454]
 gi|312167374|emb|CBW74377.1| Cell division protein ftsH (EC 3.4.24.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|251777715|ref|ZP_04820635.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082030|gb|EES47920.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 698

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L    R  ++ A L     PK  LLVGP G GKT I++ +A  
Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
           A  PF  +  + F E  +G     V ++ ++ V  A  I+
Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCII 266


>gi|253991508|ref|YP_003042864.1| ATP-dependent metalloprotease [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638386|emb|CAR67008.1| atp-binding protein (ec 3.4.24.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782958|emb|CAQ86123.1| ATP-binding protein [Photorhabdus asymbiotica]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|169633632|ref|YP_001707368.1| ATP-binding protease component [Acinetobacter baumannii SDF]
 gi|169152424|emb|CAP01379.1| ATP-binding protease component [Acinetobacter baumannii]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|149181371|ref|ZP_01859868.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. SG-1]
 gi|148850934|gb|EDL65087.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. SG-1]
          Length = 700

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 19/158 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S L+  +IGQ +A + V+ A+R R R     A L++   P  + L +GPTGVGKT +
Sbjct: 407 ELQSNLNSQVIGQDEAVKTVSKAIR-RSR-----AGLKNRNRPIGSFLFIGPTGVGKTEL 460

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S+ LA+ L G     I+++++++ E        +  I  L+      V      ++ E+ 
Sbjct: 461 SKTLAQELFGTAEAMIRLDMSEYME--------KHSISKLIGSPPGYVGHEEAGQLSEKV 512

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   + K A  + + +F + L DG ++D +
Sbjct: 513 RRNPYSIILLDEIEK-AHPDVQHMFLQILEDGRLTDSQ 549


>gi|331699829|ref|YP_004336068.1| ATPase [Pseudonocardia dioxanivorans CB1190]
 gi|326954518|gb|AEA28215.1| ATPase AAA-2 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  A 74
           A
Sbjct: 564 A 564


>gi|298245463|ref|ZP_06969269.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297552944|gb|EFH86809.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 746

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L +++IGQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT 
Sbjct: 429 RNLEQDLRKHVIGQDEAISAVARAIR-RSR-----AGLKDPKRPIGSFLFLGPTGVGKTE 482

Query: 69  ISRRLAR--LAGA-PFIKVEVTKFTEIGYVGR 97
           +++ LA     GA   I+ +++++ E   V R
Sbjct: 483 LAKALAAELFGGADHIIRFDMSEYMEPHTVSR 514


>gi|227540962|ref|ZP_03971011.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183222|gb|EEI64194.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 514 FKLTEEESSRLIHMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 567

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 568 FAGPSGVGKTELSKALAEF 586


>gi|225574400|ref|ZP_03783010.1| hypothetical protein RUMHYD_02469 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038402|gb|EEG48648.1| hypothetical protein RUMHYD_02469 [Blautia hydrogenotrophica DSM
           10507]
          Length = 827

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ++A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 518 ELHRRVIGQEEAVTAVAQAVK-RGR-----VGLKDPARPIGSFLFLGPTGVGKTELSKAL 571

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A          I+V+++++ E            GYVG
Sbjct: 572 AEAVFGTEQAMIRVDMSEYMEKHSVSKLIGSPPGYVG 608


>gi|159895653|gb|ABX10437.1| neuroprotective protein 6 [Rattus norvegicus]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 68  PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 109


>gi|12844202|dbj|BAB26274.1| unnamed protein product [Mus musculus]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
          PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 4  PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 45


>gi|71894624|ref|YP_278732.1| cell division protein FtsH [Mycoplasma synoviae 53]
          Length = 669

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           L+N  + QQ  A      MP  ILL GP G GKT +++  A  A  PF  V  + F E  
Sbjct: 213 LKNPGKYQQSGAR-----MPHGILLGGPPGTGKTLLAKATAGEANVPFYFVSASSFVELF 267

Query: 92  IGYVGRNVEQIIRD 105
           +G   + V Q+I +
Sbjct: 268 VGMGAKRVRQVISE 281


>gi|47208099|emb|CAF91931.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  +A
Sbjct: 133 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAIA 188


>gi|332973011|gb|EGK10950.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychrobacter
           sp. 1501(2011)]
          Length = 856

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 18/94 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L+R + GQ +A + ++ A++    R    A L+    P  + +  GPTGVGKT +S++L
Sbjct: 536 DLNRLVFGQSEAIKTLSDAIK--LSR----AGLKSSDKPIGSFMFAGPTGVGKTEVSKQL 589

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVG 96
           A L G   ++ +++++ E            GYVG
Sbjct: 590 ANLMGIELVRFDMSEYMEAHTASRLIGAPPGYVG 623


>gi|313157295|gb|EFR56720.1| ATP-dependent metallopeptidase HflB [Alistipes sp. HGB5]
          Length = 692

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF+ +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR-VRDLFEQA 275


>gi|304373318|ref|YP_003856527.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
 gi|304309509|gb|ADM21989.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
          Length = 726

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +PK ILL GP G GKT I++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 269 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 324


>gi|288574818|ref|ZP_06393175.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570559|gb|EFC92116.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R  A  A  PF     + F E+ +VG    + +RDL + A
Sbjct: 188 VPKGVLLLGPPGTGKTLLARACAGEAAVPFFSTSGSDFVEM-FVGVGASR-VRDLFEQA 244


>gi|254456778|ref|ZP_05070206.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Campylobacterales bacterium GD 1]
 gi|207085570|gb|EDZ62854.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Campylobacterales bacterium GD 1]
          Length = 859

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 12/89 (13%)

Query: 14  SELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           +EL+R +IGQ  A  AV+ A+ RN+       A L D   P  + L +GPTGVGKT  ++
Sbjct: 568 AELNRDVIGQAKATHAVSRAIKRNK-------AGLSDANTPIGSFLFLGPTGVGKTQTAK 620

Query: 72  RLARL---AGAPFIKVEVTKFTEIGYVGR 97
            LA+    +    I+++++++ E   V R
Sbjct: 621 TLAKFLFDSEDSMIRIDMSEYMEKHAVSR 649


>gi|154505838|ref|ZP_02042576.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149]
 gi|153793856|gb|EDN76276.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 255 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311


>gi|148285170|ref|YP_001249260.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong]
 gi|146740609|emb|CAM81263.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q+L   +     PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAGEANVPFFHISGSNFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|325117039|emb|CBZ52592.1| ATP-dependent chaperone ClpB, related [Neospora caninum Liverpool]
          Length = 970

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L   +IGQ+DA +AVA A+ R R       A L  E MP  + L +GPTGVGKT +++ L
Sbjct: 583 LHSRVIGQEDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635

Query: 74  AR---LAGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F+E   V R
Sbjct: 636 AAEMFHSEKNLIRIDMSEFSEAHSVSR 662


>gi|283780736|ref|YP_003371491.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
 gi|283439189|gb|ADB17631.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
          Length = 665

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG P+  V  ++F ++ +VG    + +RDL   A
Sbjct: 234 VPKGVLLNGPPGTGKTLLARAVAGEAGVPYYSVSGSEFIQM-FVGVGASR-VRDLFRTA 290


>gi|262277486|ref|ZP_06055279.1| ATP-dependent metallopeptidase HflB [alpha proteobacterium HIMB114]
 gi|262224589|gb|EEY75048.1| ATP-dependent metallopeptidase HflB [alpha proteobacterium HIMB114]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 185 IPKGALLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239


>gi|260587222|ref|ZP_05853135.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542417|gb|EEX22986.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 182 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 237 AHVPFFSLSGSDFVEM-FVGVGASR-VRDLFEEA 268


>gi|207340393|gb|EDZ68757.1| YPR024Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 491

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 57  LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 109


>gi|15843209|ref|NP_338246.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
           tuberculosis CDC1551]
 gi|13883563|gb|AAK48060.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
           tuberculosis CDC1551]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|328866591|gb|EGG14975.1| ATP-dependent metalloprotease [Dictyostelium fasciculatum]
          Length = 691

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT ++R +A  AG PF+    + F E  Y+G   ++ +R+L D+A
Sbjct: 312 LPRGILLSGEPGTGKTLLARAIAGEAGVPFLYTSGSSFDE-KYIGVGAKR-VRELFDLA 368


>gi|317497135|ref|ZP_07955461.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895545|gb|EFV17701.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 615

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 248


>gi|306430649|emb|CBJ17071.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASIPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|289572251|ref|ZP_06452478.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis K85]
 gi|289536682|gb|EFD41260.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis K85]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 251 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 304

Query: 74  A 74
           A
Sbjct: 305 A 305


>gi|271499168|ref|YP_003332193.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
 gi|270342723|gb|ACZ75488.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|256960612|ref|ZP_05564783.1| peptidase M41 [Enterococcus faecalis Merz96]
 gi|256951108|gb|EEU67740.1| peptidase M41 [Enterococcus faecalis Merz96]
          Length = 718

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275


>gi|227489371|ref|ZP_03919687.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090744|gb|EEI26056.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 514 FKLTEEESSRLIHMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 567

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 568 FAGPSGVGKTELSKALAEF 586


>gi|254446281|ref|ZP_05059757.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
 gi|198260589|gb|EDY84897.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
          Length = 834

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ +A  A++ ALR R R     ADL+D   P  + + +GPTGVGKT +
Sbjct: 514 QLEKELQEIVIGQDEACVAISKALR-RSR-----ADLKDPKRPIGSFMFMGPTGVGKTFL 567

Query: 70  SRRLA-RLAG--APFIKVEVTKFTEIGYVGRNV 99
           +R LA ++ G     I+V+++++ E   V R +
Sbjct: 568 ARTLAEKMFGDRDAIIQVDMSEYMEKFSVSRMI 600


>gi|193213377|ref|YP_001999330.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193086854|gb|ACF12130.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 654

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 241 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 297


>gi|153940193|ref|YP_001392688.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152936089|gb|ABS41587.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           Langeland]
 gi|295320670|gb|ADG01048.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           230613]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|148381284|ref|YP_001255825.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931204|ref|YP_001385661.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936273|ref|YP_001389067.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|148290768|emb|CAL84899.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927248|gb|ABS32748.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932187|gb|ABS37686.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           Hall]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|159045479|ref|YP_001534273.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter
           shibae DFL 12]
 gi|157913239|gb|ABV94672.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter
           shibae DFL 12]
          Length = 775

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ +A  A++ A++         A LR+   P  N L  GPTGVGKT ++++L+
Sbjct: 468 LKRVVFGQDNAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLS 521

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
              G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 522 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 566


>gi|108761289|ref|YP_632993.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus
           xanthus DK 1622]
 gi|108465169|gb|ABF90354.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus
           xanthus DK 1622]
          Length = 884

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S L   +IGQ +A R ++ A+R R R     A L+DE  P  + L +GPTGVGKT +
Sbjct: 570 ELESRLHERVIGQDEAIRVLSQAIR-RAR-----AGLKDESRPIGSFLFLGPTGVGKTEL 623

Query: 70  SRRLARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           ++ LA L        I+ +++++ E   V R V
Sbjct: 624 AKTLAELLFGDEKALIRFDMSEYMEKHTVSRLV 656


>gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
 gi|99038212|gb|ABF64824.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
          Length = 792

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 479 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 532

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 533 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 589


>gi|41614981|ref|NP_963479.1| proteasome-activating nucleotidase [Nanoarchaeum equitans Kin4-M]
 gi|40068705|gb|AAR39040.1| NEQ186 [Nanoarchaeum equitans Kin4-M]
          Length = 369

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 17/103 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT I + LA+ A A FI +  ++  +  Y+G    +++++L D A  
Sbjct: 143 PKGVLLYGPPGTGKTLIGKALAKSANATFIYIVGSELVQ-KYIGEGA-KLVKELFDYA-- 198

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFR 152
                     RE A        +DA+  +   T TS  REV R
Sbjct: 199 ----------REHAPAIVFIDEIDAIAARRIETGTSGEREVQR 231


>gi|322807659|emb|CBZ05234.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|317501238|ref|ZP_07959443.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897414|gb|EFV19480.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311


>gi|296166661|ref|ZP_06849087.1| ATP-dependent protease, ATPase subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897996|gb|EFG77576.1| ATP-dependent protease, ATPase subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 844

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|254823225|ref|ZP_05228226.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 847

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|256956807|ref|ZP_05560978.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256964188|ref|ZP_05568359.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257421554|ref|ZP_05598544.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294779309|ref|ZP_06744712.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|300862072|ref|ZP_07108152.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947303|gb|EEU63935.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256954684|gb|EEU71316.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257163378|gb|EEU93338.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294453595|gb|EFG21994.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|295112550|emb|CBL31187.1| membrane protease FtsH catalytic subunit [Enterococcus sp. 7L76]
 gi|300848597|gb|EFK76354.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|323479478|gb|ADX78917.1| ATP-dependent metallopeptidase, cell division protease ftsH domain
           protein [Enterococcus faecalis 62]
          Length = 718

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275


>gi|223041503|ref|ZP_03611706.1| cell division protease FtsH-like protein [Actinobacillus minor 202]
 gi|223017761|gb|EEF16168.1| cell division protease FtsH-like protein [Actinobacillus minor 202]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 190 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 246


>gi|168178995|ref|ZP_02613659.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950776|ref|YP_002805867.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670026|gb|EDT82002.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226844301|gb|ACO86967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|156838711|ref|XP_001643056.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113646|gb|EDO15198.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 786

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R   L A +     P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ 
Sbjct: 323 LKNPQRYTDLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 376

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 377 FVGVGASR-VRDLFEQA 392


>gi|153814599|ref|ZP_01967267.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756]
 gi|145848093|gb|EDK25011.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311


>gi|118443590|ref|YP_877423.1| cell division protein ftsH [Clostridium novyi NT]
 gi|118134046|gb|ABK61090.1| cell division protein ftsH [Clostridium novyi NT]
          Length = 611

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGASR-VRDLFEQA 251


>gi|192455670|ref|NP_001122223.1| fidgetin-like protein 1 [Danio rerio]
 gi|190339286|gb|AAI62519.1| Wu:fb82h05 [Danio rerio]
 gi|220678852|emb|CAX12972.1| novel protein (zgc:193664) [Danio rerio]
          Length = 661

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  +A
Sbjct: 421 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAIA 476


>gi|331083543|ref|ZP_08332654.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403754|gb|EGG83306.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 180 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 235 AHVPFFSLSGSDFVEM-FVGVGASR-VRDLFEEA 266


>gi|325578451|ref|ZP_08148586.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160187|gb|EGC72316.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|323350187|gb|EGA84334.1| Yme1p [Saccharomyces cerevisiae VL3]
          Length = 692

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 258 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 310


>gi|330723806|gb|AEC46176.1| cell division protein [Mycoplasma hyorhinis MCLD]
          Length = 726

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +PK ILL GP G GKT I++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 269 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 324


>gi|289548616|ref|YP_003473604.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484]
 gi|289182233|gb|ADC89477.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484]
          Length = 620

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL G  GVGKT ++R +A  A  PFI V  + F E+ +VG    + +RDL + A
Sbjct: 188 PKGVLLYGEPGVGKTLLARAIAGEAHVPFISVSGSDFVEM-FVGVGAAR-VRDLFETA 243


>gi|237796782|ref|YP_002864334.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|229261886|gb|ACQ52919.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|170757175|ref|YP_001782967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169122387|gb|ACA46223.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B1 str.
           Okra]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|167767829|ref|ZP_02439882.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
 gi|167710568|gb|EDS21147.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
          Length = 598

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 231


>gi|170089903|ref|XP_001876174.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649434|gb|EDR13676.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT +++ LA+ +GA FI +  +  T   Y
Sbjct: 119 PKGVLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKWY 160


>gi|29374906|ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256618325|ref|ZP_05475171.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256855219|ref|ZP_05560580.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|257081552|ref|ZP_05575913.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|257084200|ref|ZP_05578561.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|257088027|ref|ZP_05582388.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257417630|ref|ZP_05594624.1| peptidase M41 [Enterococcus faecalis AR01/DG]
 gi|257418645|ref|ZP_05595639.1| peptidase M41 [Enterococcus faecalis T11]
 gi|29342364|gb|AAO80130.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256597852|gb|EEU17028.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256709732|gb|EEU24779.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|256989582|gb|EEU76884.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|256992230|gb|EEU79532.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|256996057|gb|EEU83359.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257159458|gb|EEU89418.1| peptidase M41 [Enterococcus faecalis ARO1/DG]
 gi|257160473|gb|EEU90433.1| peptidase M41 [Enterococcus faecalis T11]
          Length = 718

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275


>gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510]
 gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510]
          Length = 593

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  AG PF     + F E+ +VG    + +R+L   A
Sbjct: 186 VPKGLLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEM-FVGLGAAR-VRNLFKTA 242


>gi|260550321|ref|ZP_05824533.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
 gi|260406633|gb|EEX00114.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A+L G   ++ +++++ E   V R
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSR 530


>gi|259416112|ref|ZP_05740032.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
 gi|259347551|gb|EEW59328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
          Length = 778

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 465 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 518

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 519 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 569


>gi|198443066|pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh
 gi|198443067|pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh
 gi|198443069|pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443070|pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443071|pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443072|pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443073|pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
          Length = 268

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 43  IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 99


>gi|190348983|gb|EDK41546.2| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 978

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  V      L+N  + ++L A +     P+  +L GP G GKT I++  A  
Sbjct: 509 VAGMSEAKEEVVEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATAGE 563

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 564 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 595


>gi|163796934|ref|ZP_02190890.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
 gi|159177681|gb|EDP62232.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|158422152|ref|YP_001523444.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
 gi|158329041|dbj|BAF86526.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|187924838|ref|YP_001896480.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
 gi|187716032|gb|ACD17256.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|46446274|ref|YP_007639.1| cell division protein FtsH [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627381|sp|Q6MDI5|FTSH_PARUW RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46399915|emb|CAF23364.1| probable cell division protein FtsH [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 916

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    + IRDL + A
Sbjct: 456 IPKGVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASR-IRDLFEQA 512


>gi|324323802|gb|ADY24846.1| hypothetical protein YBT020_28449 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L++ IIGQQD K+ +  +L    R++           P  +L  GP+GVGKT +S+ +++
Sbjct: 60  LNKEIIGQQDPKKKIMSSLYKLRRKKNNK--------PVVLLFYGPSGVGKTELSKVVSK 111

Query: 76  LAGAPFIKVEVT 87
             G   ++++ +
Sbjct: 112 HLGGSLLRIQFS 123


>gi|323302542|gb|EGA56349.1| Yme1p [Saccharomyces cerevisiae FostersB]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 258 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 310


>gi|299144437|ref|ZP_07037517.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518922|gb|EFI42661.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 623

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFIMSGSDFVEM-FVGVGASR-VRDLFENA 248


>gi|269468371|gb|EEZ80036.1| ATPase with chaperone activity, ATP-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 18/99 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           + + SEL   + GQ DA  +++ +++ +R    Q+     D+ M  + L  GPTGVGKT 
Sbjct: 444 KNLESELKLGVFGQNDAVESLSTSIKLSRSGLAQV-----DKPM-GSFLFAGPTGVGKTE 497

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           I ++LAR+ G   ++ +++++ E            GYVG
Sbjct: 498 ICKQLARIMGVKLLRFDMSEYMERHSISKLIGSPPGYVG 536


>gi|159463438|ref|XP_001689949.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283937|gb|EDP09687.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 752

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++  A  AG PF+ +  + F E+ +VG    + +RDL
Sbjct: 318 IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM-FVGVGPAR-VRDL 370


>gi|91200776|emb|CAJ73829.1| strongly similar to negative regulator of genetic competence
           ClpC/MecB [Candidatus Kuenenia stuttgartiensis]
          Length = 826

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +I Q++A RA++ A+R R R     A L++   P  + + VGP+GVGKT ++R L
Sbjct: 510 ELHKMVISQEEATRAISKAIR-RSR-----ARLKNPNRPVASFIFVGPSGVGKTHLARSL 563

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A+L        ++++++++ E   + R
Sbjct: 564 AKLVFGEEGSLVQIDMSEYMEKHSISR 590


>gi|55379429|ref|YP_137280.1| cell division protein FtsH [Haloarcula marismortui ATCC 43049]
 gi|55232154|gb|AAV47573.1| cell division protein FtsH [Haloarcula marismortui ATCC 43049]
          Length = 492

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +L VGP G GKT+++R LA     PF++V+++  T   +G   +NVE++ 
Sbjct: 255 LLFVGPPGTGKTSVARALAHDLDLPFVEVKLSMITSQYLGETAKNVEKVF 304


>gi|194334584|ref|YP_002016444.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
 gi|194312402|gb|ACF46797.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 243 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 299


>gi|31794773|ref|NP_857266.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
           bovis AF2122/97]
 gi|57117131|ref|YP_177995.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           tuberculosis H37Rv]
 gi|121639516|ref|YP_979740.1| putative ATP-dependent Clp protease ATP-binding subunit clpC
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663461|ref|YP_001284984.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
           tuberculosis H37Ra]
 gi|148824802|ref|YP_001289556.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis F11]
 gi|167968197|ref|ZP_02550474.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis H37Ra]
 gi|215405646|ref|ZP_03417827.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis 02_1987]
 gi|224992013|ref|YP_002646702.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800637|ref|YP_003033638.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|260184516|ref|ZP_05761990.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289445190|ref|ZP_06434934.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555859|ref|ZP_06445069.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289747433|ref|ZP_06506811.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           tuberculosis 02_1987]
 gi|294993716|ref|ZP_06799407.1| probable ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium tuberculosis 210]
 gi|297636272|ref|ZP_06954052.1| probable ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium tuberculosis KZN 4207]
 gi|297733266|ref|ZP_06962384.1| probable ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium tuberculosis KZN R506]
 gi|306791193|ref|ZP_07429495.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu005]
 gi|307086394|ref|ZP_07495507.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu012]
 gi|313660596|ref|ZP_07817476.1| probable ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium tuberculosis KZN V2475]
 gi|61221148|sp|P0A522|CLPC_MYCTU RecName: Full=Probable ATP-dependent Clp protease ATP-binding
           subunit
 gi|61221149|sp|P0A523|CLPC_MYCBO RecName: Full=Probable ATP-dependent Clp protease ATP-binding
           subunit
 gi|31620370|emb|CAD95813.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC
           [Mycobacterium bovis AF2122/97]
 gi|41352812|emb|CAE55620.1| PROBABLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1
           [Mycobacterium tuberculosis H37Rv]
 gi|121495164|emb|CAL73650.1| Probable ATP-dependent clp proteasE ATP-binding subunit clpC
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507613|gb|ABQ75422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
           tuberculosis H37Ra]
 gi|148723329|gb|ABR07954.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis F11]
 gi|224775128|dbj|BAH27934.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322140|gb|ACT26743.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289418148|gb|EFD15349.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440491|gb|EFD22984.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis KZN 605]
 gi|289687961|gb|EFD55449.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           tuberculosis 02_1987]
 gi|308340222|gb|EFP29073.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu005]
 gi|308364160|gb|EFP53011.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis SUMu012]
 gi|323717705|gb|EGB26905.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905435|gb|EGE52368.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
           tuberculosis W-148]
 gi|328460368|gb|AEB05791.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
 gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
          Length = 720

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      L+N  +  +L   +     PK  LL+GP G GKT +++ +A  
Sbjct: 201 VAGQEGAKQEVQEIVEFLKNPEKYTELGGKI-----PKGALLIGPPGTGKTLLAKAVAGE 255

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  +  + F E+ +VG
Sbjct: 256 AGVPFFSMSGSDFVEM-FVG 274


>gi|257088704|ref|ZP_05583065.1| peptidase M41 [Enterococcus faecalis CH188]
 gi|256997516|gb|EEU84036.1| peptidase M41 [Enterococcus faecalis CH188]
          Length = 718

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275


>gi|221203042|ref|ZP_03576061.1| putative Cell division protease FtsH homolog [Burkholderia
           multivorans CGD2]
 gi|221176976|gb|EEE09404.1| putative Cell division protease FtsH homolog [Burkholderia
           multivorans CGD2]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 209 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 262

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 263 FVGVGAAR-VRDLFEQA 278


>gi|209964987|ref|YP_002297902.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           centenum SW]
 gi|209958453|gb|ACI99089.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           centenum SW]
          Length = 765

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A LRD   P  N L  GPTGVGKT ++++LAR  G    + +++++ E            
Sbjct: 483 AGLRDAEKPIGNYLFSGPTGVGKTEVAKQLARTLGIELTRFDMSEYMERHTVSRLIGAPP 542

Query: 93  GYVGRNVEQIIRDLVD 108
           GYVG +   ++ D VD
Sbjct: 543 GYVGFDQGGLLTDAVD 558


>gi|126641955|ref|YP_001084939.1| ATP-binding protease component [Acinetobacter baumannii ATCC 17978]
          Length = 718

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 413 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 466

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 467 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 511


>gi|41406559|ref|NP_959395.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41394908|gb|AAS02778.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 843

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|83950866|ref|ZP_00959599.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           nubinhibens ISM]
 gi|83838765|gb|EAP78061.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           nubinhibens ISM]
          Length = 872

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 565 LHRRVIGQNQAVKAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVAR 644


>gi|116689319|ref|YP_834942.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia
           HI2424]
 gi|170732618|ref|YP_001764565.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
 gi|116647408|gb|ABK08049.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           HI2424]
 gi|169815860|gb|ACA90443.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|326525491|dbj|BAJ88792.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527513|dbj|BAK08031.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  + S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 152 PNVLYSDIGGCDIQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTM 206

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 LAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|312904626|ref|ZP_07763781.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|310631978|gb|EFQ15261.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|315036602|gb|EFT48534.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0027]
 gi|315153551|gb|EFT97567.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0031]
 gi|315158586|gb|EFU02603.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0312]
 gi|329577260|gb|EGG58724.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1467]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283


>gi|301156345|emb|CBW15816.1| protease, ATP-dependent zinc-metallo [Haemophilus parainfluenzae
           T3T1]
          Length = 618

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 169 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 225


>gi|307730491|ref|YP_003907715.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|323526824|ref|YP_004228977.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001]
 gi|307585026|gb|ADN58424.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|323383826|gb|ADX55917.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|257453455|ref|ZP_05618750.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter
           aerosaccus SK60]
 gi|257449207|gb|EEV24155.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter
           aerosaccus SK60]
          Length = 819

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 18/95 (18%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S L   + GQ +A + +A A++    R    A L+ +  P  + +  GPTGVGKT +SR+
Sbjct: 518 SNLKHLVFGQDEAIKNLADAIK--LSR----AGLKPDDKPIGSFMFAGPTGVGKTEVSRQ 571

Query: 73  LARLAGAPFIKVEVTKFTEI-----------GYVG 96
           LA L G   ++ +++++ E            GYVG
Sbjct: 572 LANLLGIELVRFDMSEYMEAHTASRLIGAPPGYVG 606


>gi|254552708|ref|ZP_05143155.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 303

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R      +  A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 142 ELHKRIIGQEDAVKAVSKAIR------RTRAGLKDPKRPSGSFIFAGPSGVGKTELSKAL 195

Query: 74  A 74
           A
Sbjct: 196 A 196


>gi|254448846|ref|ZP_05062302.1| cell division protein FtsH [gamma proteobacterium HTCC5015]
 gi|198261536|gb|EDY85825.1| cell division protein FtsH [gamma proteobacterium HTCC5015]
          Length = 646

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|170695459|ref|ZP_02886604.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M]
 gi|170139650|gb|EDT07833.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|169795755|ref|YP_001713548.1| ATP-binding protease component [Acinetobacter baumannii AYE]
 gi|184158340|ref|YP_001846679.1| ATPase [Acinetobacter baumannii ACICU]
 gi|213157553|ref|YP_002319598.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB0057]
 gi|239503975|ref|ZP_04663285.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB900]
 gi|260554818|ref|ZP_05827039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii ATCC 19606]
 gi|301344684|ref|ZP_07225425.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB056]
 gi|301511219|ref|ZP_07236456.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB058]
 gi|301595569|ref|ZP_07240577.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB059]
 gi|332871193|ref|ZP_08439770.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013113]
 gi|332873456|ref|ZP_08441408.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6014059]
 gi|169148682|emb|CAM86548.1| ATP-binding protease component [Acinetobacter baumannii AYE]
 gi|183209934|gb|ACC57332.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|193077510|gb|ABO12337.2| ATP-binding protease component [Acinetobacter baumannii ATCC 17978]
 gi|213056713|gb|ACJ41615.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB0057]
 gi|260411360|gb|EEX04657.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii ATCC 19606]
 gi|322508667|gb|ADX04121.1| clpA [Acinetobacter baumannii 1656-2]
 gi|323518275|gb|ADX92656.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332731678|gb|EGJ62961.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013113]
 gi|332738344|gb|EGJ69219.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6014059]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|168182032|ref|ZP_02616696.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
 gi|182674745|gb|EDT86706.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787792|emb|CAE16907.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|115351227|ref|YP_773066.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD]
 gi|172060241|ref|YP_001807893.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|115281215|gb|ABI86732.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria
           AMMD]
 gi|171992758|gb|ACB63677.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK     +   L+   R Q++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 209 VAGQEEAKLELEEIVDFLKEPARFQKIGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 263

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           AG  F     + F E+ +VG    + +RDL +
Sbjct: 264 AGVSFFHTSGSDFVEM-FVGMGAAR-VRDLFE 293


>gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
 gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
          Length = 678

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 285


>gi|307290189|ref|ZP_07570107.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
 gi|306498745|gb|EFM68244.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 229 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 285


>gi|304413877|ref|ZP_07395294.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola
           LSR1]
 gi|304283597|gb|EFL91992.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola
           LSR1]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LRDPGRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|294669676|ref|ZP_06734743.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308589|gb|EFE49832.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 671

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 MPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|259501964|ref|ZP_05744866.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
 gi|259170141|gb|EEW54636.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
          Length = 706

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 281


>gi|206559644|ref|YP_002230405.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
 gi|198035682|emb|CAR51569.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
          Length = 632

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|156849115|ref|XP_001647438.1| hypothetical protein Kpol_1018p113 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118124|gb|EDO19580.1| hypothetical protein Kpol_1018p113 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 331 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 383


>gi|78065910|ref|YP_368679.1| FtsH peptidase [Burkholderia sp. 383]
 gi|77966655|gb|ABB08035.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383]
          Length = 632

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|51244738|ref|YP_064622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfotalea
           psychrophila LSv54]
 gi|50875775|emb|CAG35615.1| probable ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Desulfotalea psychrophila LSv54]
          Length = 750

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           R + + L   + GQ +A +A+  A++ R R     A L + L P  + +  GPTGVGKT 
Sbjct: 455 RHLDNSLRSVVYGQDNAIKALTTAVK-RSR-----AGLGNPLSPTGSFVFSGPTGVGKTE 508

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA+  G  F + +++++ E   V R
Sbjct: 509 VARQLAKQLGIHFERFDMSEYMEKHAVAR 537


>gi|148543505|ref|YP_001270875.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri DSM
           20016]
 gi|194467680|ref|ZP_03073667.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227363654|ref|ZP_03847768.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|325681849|ref|ZP_08161368.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
 gi|148530539|gb|ABQ82538.1| membrane protease FtsH catalytic subunit [Lactobacillus reuteri DSM
           20016]
 gi|194454716|gb|EDX43613.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227071323|gb|EEI09632.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|324978940|gb|EGC15888.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283


>gi|295677138|ref|YP_003605662.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002]
 gi|295436981|gb|ADG16151.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|227544679|ref|ZP_03974728.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300909079|ref|ZP_07126542.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
 gi|227185325|gb|EEI65396.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300894486|gb|EFK87844.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283


>gi|221196369|ref|ZP_03569416.1| cell division protease FtsH homolog [Burkholderia multivorans
           CGD2M]
 gi|221182923|gb|EEE15323.1| cell division protease FtsH homolog [Burkholderia multivorans
           CGD2M]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|215429096|ref|ZP_03427015.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis T92]
 gi|289752310|ref|ZP_06511688.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis T92]
 gi|289692897|gb|EFD60326.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis T92]
          Length = 682

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 347 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 400

Query: 74  A 74
           A
Sbjct: 401 A 401


>gi|184152912|ref|YP_001841253.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
 gi|183224256|dbj|BAG24773.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
          Length = 680

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 205 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 261


>gi|171318231|ref|ZP_02907394.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
 gi|171096575|gb|EDT41469.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|170761395|ref|YP_001788658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408384|gb|ACA56795.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|91784537|ref|YP_559743.1| FtsH peptidase [Burkholderia xenovorans LB400]
 gi|296158195|ref|ZP_06841027.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|91688491|gb|ABE31691.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
 gi|295891531|gb|EFG71317.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|85859372|ref|YP_461574.1| cell division protein [Syntrophus aciditrophicus SB]
 gi|85722463|gb|ABC77406.1| cell division protein [Syntrophus aciditrophicus SB]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF+ +  + F E+ +VG    + +RDL   A
Sbjct: 185 IPKGLLLVGPPGTGKTLLAKAIAGEADVPFLTISGSDFVEM-FVGVGASR-VRDLFTQA 241


>gi|21221802|ref|NP_627581.1| Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)]
 gi|256787021|ref|ZP_05525452.1| Clp-family ATP-binding protease [Streptomyces lividans TK24]
 gi|289770914|ref|ZP_06530292.1| Clp-family ATP-binding protease [Streptomyces lividans TK24]
 gi|4585605|emb|CAB40873.1| putative Clp-family ATP-binding protease [Streptomyces coelicolor
           A3(2)]
 gi|289701113|gb|EFD68542.1| Clp-family ATP-binding protease [Streptomyces lividans TK24]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|107022372|ref|YP_620699.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU
           1054]
 gi|254245759|ref|ZP_04939080.1| Peptidase M41 [Burkholderia cenocepacia PC184]
 gi|105892561|gb|ABF75726.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           AU 1054]
 gi|124870535|gb|EAY62251.1| Peptidase M41 [Burkholderia cenocepacia PC184]
          Length = 627

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 238


>gi|125973732|ref|YP_001037642.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           thermocellum ATCC 27405]
 gi|256005534|ref|ZP_05430495.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 2360]
 gi|281417889|ref|ZP_06248909.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum JW20]
 gi|125713957|gb|ABN52449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           thermocellum ATCC 27405]
 gi|255990514|gb|EEU00635.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 2360]
 gi|281409291|gb|EFB39549.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum JW20]
 gi|316940074|gb|ADU74108.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 1313]
          Length = 776

 Score = 43.5 bits (101), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 31/43 (72%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++L VGPTGVGKT ++++L+   G PFI+ +++++ E   V R
Sbjct: 517 SLLFVGPTGVGKTELAKQLSLHLGIPFIRFDMSEYQEKHTVSR 559


>gi|328956579|ref|YP_004373965.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
 gi|328672903|gb|AEB28949.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
          Length = 721

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 278


>gi|330816268|ref|YP_004359973.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
 gi|327368661|gb|AEA60017.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|326383982|ref|ZP_08205665.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197142|gb|EGD54333.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 846

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQQDA  AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQQDAVAAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|325568178|ref|ZP_08144619.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
 gi|325158379|gb|EGC70530.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|303391441|ref|XP_003073950.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303303099|gb|ADM12590.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIG +D K+ +   +    +R  L   LR    PK +LL GP G GKT I + +A    A
Sbjct: 156 IIGLKDVKKTINEIVLWPMQRPDLFTGLRGP--PKGLLLFGPPGTGKTMIGKCIASQCKA 213

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E+++R L  +A
Sbjct: 214 TFFSISASSLTS-KWVGEG-EKMVRALFYLA 242


>gi|293388119|ref|ZP_06632646.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|312909257|ref|ZP_07768114.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
 gi|291082495|gb|EFE19458.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|311290499|gb|EFQ69055.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
          Length = 725

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282


>gi|260913936|ref|ZP_05920410.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
 gi|260632023|gb|EEX50200.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238


>gi|260565806|ref|ZP_05836289.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M]
 gi|260151179|gb|EEW86274.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M]
          Length = 516

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 61  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 117


>gi|257899973|ref|ZP_05679626.1| peptidase M41 [Enterococcus faecium Com15]
 gi|293571078|ref|ZP_06682119.1| Cell division protease FtsH [Enterococcus faecium E980]
 gi|257837885|gb|EEV62959.1| peptidase M41 [Enterococcus faecium Com15]
 gi|291608861|gb|EFF38142.1| Cell division protease FtsH [Enterococcus faecium E980]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|251791041|ref|YP_003005762.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
 gi|247539662|gb|ACT08283.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
          Length = 650

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|222152938|ref|YP_002562115.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           uberis 0140J]
 gi|222113751|emb|CAR41760.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus uberis 0140J]
          Length = 700

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ S L +++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 408 KEMDSRLKQHVIGQNQAVEAVARAIRRNR-------AGFDDGHRPIGSFLFVGPTGVGKT 460

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 461 ELAKQLA 467


>gi|215408555|emb|CAR31127.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 166

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|209517185|ref|ZP_03266030.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160]
 gi|209502321|gb|EEA02332.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|170697952|ref|ZP_02889035.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
 gi|170137118|gb|EDT05363.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|149410206|ref|XP_001506217.1| PREDICTED: similar to Fidgetin-like 1 [Ornithorhynchus anatinus]
          Length = 731

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 491 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 546


>gi|44417|emb|CAA37573.1| unnamed protein product [Mycobacterium leprae]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|263099|gb|AAB24841.1| Tat binding protein 7, TBP-7=transcriptional activator [human,
           Peptide, 458 aa]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|320335488|ref|YP_004172199.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756777|gb|ADV68534.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     P  +LLVGP G GKT +++ +A  AG P+  +  + F E+ 
Sbjct: 188 LRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAGEAGVPYFSISGSDFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|307129378|ref|YP_003881394.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
 gi|306526907|gb|ADM96837.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|307274229|ref|ZP_07555437.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
 gi|306509191|gb|EFM78253.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
          Length = 725

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282


>gi|296273085|ref|YP_003655716.1| AAA ATPase central domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097259|gb|ADG93209.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 493

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP GVGKT I+R +A  +  PF       F +I YVG   +++
Sbjct: 148 LPKGVLLYGPPGVGKTLIARAVAGESNVPFFYQSGASFVQI-YVGMGAKRV 197


>gi|271968435|ref|YP_003342631.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270511610|gb|ACZ89888.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 663

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 246 LPKGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGASRVRELFEEARKV 305

Query: 110 AINIV 114
           A +I+
Sbjct: 306 APSII 310


>gi|260202787|ref|ZP_05770278.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis K85]
          Length = 557

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 222 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 275

Query: 74  A 74
           A
Sbjct: 276 A 276


>gi|256762060|ref|ZP_05502640.1| peptidase M41 [Enterococcus faecalis T3]
 gi|257078476|ref|ZP_05572837.1| peptidase M41 [Enterococcus faecalis JH1]
 gi|256683311|gb|EEU23006.1| peptidase M41 [Enterococcus faecalis T3]
 gi|256986506|gb|EEU73808.1| peptidase M41 [Enterococcus faecalis JH1]
          Length = 709

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 210 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 266


>gi|255974765|ref|ZP_05425351.1| peptidase M41 [Enterococcus faecalis T2]
 gi|255967637|gb|EET98259.1| peptidase M41 [Enterococcus faecalis T2]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 268


>gi|255971765|ref|ZP_05422351.1| peptidase M41 [Enterococcus faecalis T1]
 gi|255962783|gb|EET95259.1| peptidase M41 [Enterococcus faecalis T1]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 212 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 268


>gi|240949043|ref|ZP_04753395.1| cell division protease FtsH-like protein [Actinobacillus minor
           NM305]
 gi|240296556|gb|EER47179.1| cell division protease FtsH-like protein [Actinobacillus minor
           NM305]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 191 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 247


>gi|213646997|ref|ZP_03377050.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 277

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|187776739|ref|ZP_02993212.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
 gi|187775398|gb|EDU39200.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
          Length = 654

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253


>gi|167587472|ref|ZP_02379860.1| ATP-dependent metalloprotease FtsH [Burkholderia ubonensis Bu]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|162448221|ref|YP_001621353.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii
           PG-8A]
 gi|310943111|sp|A9NE17|FTSH_ACHLI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|161986328|gb|ABX81977.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii
           PG-8A]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  +  + F E+ YVG    + +RDL  VA
Sbjct: 214 VPKGVLLVGQPGTGKTLLAKAVAGEAQVPFFSISGSDFVEL-YVGVGASR-VRDLFKVA 270


>gi|146413306|ref|XP_001482624.1| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 978

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  V      L+N  + ++L A +     P+  +L GP G GKT I++  A  
Sbjct: 509 VAGMSEAKEEVVEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATAGE 563

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 564 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 595


>gi|186475644|ref|YP_001857114.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192103|gb|ACC70068.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|312378262|gb|EFR24888.1| hypothetical protein AND_10232 [Anopheles darlingi]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167


>gi|307268518|ref|ZP_07549893.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|312952665|ref|ZP_07771529.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|306515179|gb|EFM83719.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|310629453|gb|EFQ12736.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|315032985|gb|EFT44917.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0017]
 gi|315145395|gb|EFT89411.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2141]
 gi|315156269|gb|EFU00286.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0043]
 gi|315160785|gb|EFU04802.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0645]
 gi|315579384|gb|EFU91575.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0630]
 gi|327534062|gb|AEA92896.1| cell division protein FtsH [Enterococcus faecalis OG1RF]
          Length = 725

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282


>gi|290770264|gb|ADD62019.1| putative protein [uncultured organism]
          Length = 720

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 200 VAGQDEAKESLTEIVDFLHNPDKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 254

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 255 ANVPFFSLAGSDFVEM-FVGVGASR-VRDL 282


>gi|295696291|ref|YP_003589529.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
 gi|295411893|gb|ADG06385.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
          Length = 493

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 18/134 (13%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           I GQ+ AKR +  AL   R R + +QL       + P K ILL GP G GKT +++  A 
Sbjct: 63  IGGQEHAKRELMEALDFLRYRDKIRQLG------IRPLKGILLTGPPGTGKTLMAKAAAT 116

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
              + F+    ++F E+ YVG   ++ +RDL   A    R+S R E ++ A +  +E  +
Sbjct: 117 YTDSSFVSASGSEFVEM-YVGVGAQR-VRDLFRRA----RQSARKEGKDSAIVFIDE--I 168

Query: 136 DALVGKTATSNTRE 149
           D + G+    + +E
Sbjct: 169 DVIGGRRGNHSHQE 182


>gi|290988970|ref|XP_002677143.1| predicted protein [Naegleria gruberi]
 gi|284090749|gb|EFC44399.1| predicted protein [Naegleria gruberi]
          Length = 472

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  GVGKT +++ +A  AG PF     ++F E+ +VG   ++ IR+L   A
Sbjct: 50  LPKGVLLVGKPGVGKTLLAKAIAGEAGVPFFFCSGSEFDEM-FVGVGAKR-IRELFAAA 106


>gi|257068458|ref|YP_003154713.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
 gi|310943121|sp|C7MC16|FTSH_BRAFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256559276|gb|ACU85123.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
          Length = 704

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 209 IPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNTA 265


>gi|227520050|ref|ZP_03950099.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227555911|ref|ZP_03985958.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|307276454|ref|ZP_07557577.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|307278664|ref|ZP_07559734.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|227072598|gb|EEI10561.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227174968|gb|EEI55940.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|306504724|gb|EFM73924.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|306506934|gb|EFM76081.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|315151134|gb|EFT95150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0012]
 gi|315168158|gb|EFU12175.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1341]
 gi|315573573|gb|EFU85764.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309B]
          Length = 725

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282


>gi|215483240|ref|YP_002325447.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii AB307-0294]
 gi|332853310|ref|ZP_08434689.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013150]
 gi|213987093|gb|ACJ57392.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii AB307-0294]
 gi|332728709|gb|EGJ60072.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013150]
          Length = 743

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 438 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 491

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 492 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 536


>gi|163791060|ref|ZP_02185481.1| cell division protein FtsH [Carnobacterium sp. AT7]
 gi|159873705|gb|EDP67788.1| cell division protein FtsH [Carnobacterium sp. AT7]
          Length = 718

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 278


>gi|74195574|dbj|BAE39598.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVK-KYLGEG-PRMVRDVFRLA 254


>gi|51893679|ref|YP_076370.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81388257|sp|Q67LC0|FTSH1_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|51857368|dbj|BAD41526.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 594

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL GP G GKT ++R LA  AG PF     + F E+ + G    + +R L D A
Sbjct: 178 IPRGILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVEL-FAGTGAAR-VRALFDRA 234


>gi|194335260|ref|YP_002017054.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307737|gb|ACF42437.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 697

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 285


>gi|310779128|ref|YP_003967461.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM
           2926]
 gi|309748451|gb|ADO83113.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM
           2926]
          Length = 738

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 287 IPKGVLLLGAPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFNKA 343


>gi|293382699|ref|ZP_06628624.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|312908595|ref|ZP_07767537.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
 gi|291079859|gb|EFE17223.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|310625382|gb|EFQ08665.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283


>gi|229550494|ref|ZP_04439219.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|307286956|ref|ZP_07567031.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|312901063|ref|ZP_07760352.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|229304351|gb|EEN70347.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|306501902|gb|EFM71191.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|311291809|gb|EFQ70365.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|315026777|gb|EFT38709.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2137]
 gi|315028816|gb|EFT40748.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4000]
 gi|315147113|gb|EFT91129.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4244]
 gi|315165843|gb|EFU09860.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1302]
 gi|315171402|gb|EFU15419.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1342]
 gi|315172635|gb|EFU16652.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1346]
 gi|315582079|gb|EFU94270.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309A]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283


>gi|172041364|ref|YP_001801078.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109]
 gi|171852668|emb|CAQ05644.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109]
          Length = 894

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R  ++  EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 508 FKLTEEESSRLLDMEGELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 561

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 562 FAGPSGVGKTELSKALAEF 580


>gi|168185579|ref|ZP_02620214.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169296515|gb|EDS78648.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 195 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 251


>gi|294101778|ref|YP_003553636.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
 gi|293616758|gb|ADE56912.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R  A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 188 VPKGVLLLGPPGTGKTLLARAAAGEADVPFFSVSGSDFVEM-FVGVGAAR-VRDLFEQA 244


>gi|283836276|ref|ZP_06356017.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
 gi|291067639|gb|EFE05748.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|257877910|ref|ZP_05657563.1| peptidase M41 [Enterococcus casseliflavus EC20]
 gi|257812076|gb|EEV40896.1| peptidase M41 [Enterococcus casseliflavus EC20]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|254574390|ref|XP_002494304.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia pastoris GS115]
 gi|238034103|emb|CAY72125.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia pastoris GS115]
          Length = 710

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ 
Sbjct: 293 LKNPKKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 346

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 347 FVGVGASR-VRDLFQQA 362


>gi|229546905|ref|ZP_04435630.1| cell division protein FtsH [Enterococcus faecalis TX1322]
 gi|229307833|gb|EEN73820.1| cell division protein FtsH [Enterococcus faecalis TX1322]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283


>gi|227552663|ref|ZP_03982712.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257888631|ref|ZP_05668284.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257897414|ref|ZP_05677067.1| peptidase M41 [Enterococcus faecium Com12]
 gi|293378828|ref|ZP_06624983.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
 gi|227178192|gb|EEI59164.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257824685|gb|EEV51617.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257833979|gb|EEV60400.1| peptidase M41 [Enterococcus faecium Com12]
 gi|292642369|gb|EFF60524.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|237730098|ref|ZP_04560579.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
 gi|226908704|gb|EEH94622.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|182680533|ref|YP_001834679.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636416|gb|ACB97190.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|114570962|ref|YP_757642.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
 gi|114341424|gb|ABI66704.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGALLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|329939478|ref|ZP_08288814.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus
           M045]
 gi|329301707|gb|EGG45601.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus
           M045]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|327398708|ref|YP_004339577.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
 gi|327181337|gb|AEA33518.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
          Length = 599

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 185 IPKGVLLVGAPGTGKTLVAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFNQA 241


>gi|323144909|ref|ZP_08079472.1| cell division protease FtsH [Succinatimonas hippei YIT 12066]
 gi|322415307|gb|EFY06078.1| cell division protease FtsH [Succinatimonas hippei YIT 12066]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 184 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFQTA 240


>gi|256828068|ref|YP_003156796.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM
           4028]
 gi|256577244|gb|ACU88380.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM
           4028]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237


>gi|227494494|ref|ZP_03924810.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
 gi|226832228|gb|EEH64611.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
          Length = 670

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L N  R Q++ A +     P+ +LL GP G GKT +++ +A  A  PF  +  ++F E+ 
Sbjct: 190 LANAERYQKVGAKV-----PRGVLLYGPPGTGKTLLAKAVAGEAEVPFFSISGSEFMEL- 243

Query: 94  YVGRNVEQIIRDLVDVA 110
           YVG    + +R+L D A
Sbjct: 244 YVGVGASR-VRELFDKA 259


>gi|160942939|ref|ZP_02090178.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445840|gb|EDP22843.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 769

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + +IGQ +A   VA A++ R R     ADL     P + + VGPTGVGKT + ++LA 
Sbjct: 476 LKQKVIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQLAE 529

Query: 76  L---AGAPFIKVEVTKFTEIGYVGRNV 99
                  P I+++++++ E   V R +
Sbjct: 530 QLFDGPDPLIRLDMSEYMEKYAVSRMI 556


>gi|149689884|ref|XP_001503243.1| PREDICTED: ATPase family, AAA domain containing 1 [Equus caballus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|126734140|ref|ZP_01749887.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
 gi|126717006|gb|EBA13870.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
          Length = 759

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 444 KDLEKSLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 497

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 498 VAKQLADTLGVELMRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 548


>gi|161520727|ref|YP_001584154.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|160344777|gb|ABX17862.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 209 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 262

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 263 FVGVGAAR-VRDLFEQA 278


>gi|157109980|ref|XP_001650903.1| aaa atpase [Aedes aegypti]
 gi|108878840|gb|EAT43065.1| aaa atpase [Aedes aegypti]
          Length = 399

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167


>gi|134295360|ref|YP_001119095.1| FtsH peptidase [Burkholderia vietnamiensis G4]
 gi|134138517|gb|ABO54260.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|284801329|ref|YP_003413194.1| ATP-dependent protease [Listeria monocytogenes 08-5578]
 gi|284994471|ref|YP_003416239.1| ATP-dependent protease [Listeria monocytogenes 08-5923]
 gi|284056891|gb|ADB67832.1| ATP-dependent protease [Listeria monocytogenes 08-5578]
 gi|284059938|gb|ADB70877.1| ATP-dependent protease [Listeria monocytogenes 08-5923]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483

Query: 78  GA--PFIKVEVTKFTE-----------IGYVGR 97
           G     I++++++F E            GYVG 
Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|260198638|ref|ZP_05766129.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
           tuberculosis T46]
 gi|289441026|ref|ZP_06430770.1| probable ATP-dependent clp protease ATP-binding subunit clpC
           [Mycobacterium tuberculosis T46]
 gi|289413945|gb|EFD11185.1| probable ATP-dependent clp protease ATP-binding subunit clpC
           [Mycobacterium tuberculosis T46]
          Length = 652

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 415 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 468

Query: 74  A 74
           A
Sbjct: 469 A 469


>gi|254694352|ref|ZP_05156180.1| FtsH, cell division protein FtsH [Brucella abortus bv. 3 str.
           Tulya]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 13  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 69


>gi|215489515|ref|YP_002331946.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|239977372|sp|B7UQI0|MIAA_ECO27 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|215267587|emb|CAS12042.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    NVE+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNVEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|260816555|ref|XP_002603036.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
 gi|229288351|gb|EEN59048.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
          Length = 572

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +R+L   A
Sbjct: 360 LPKGVLLVGPPGTGKTLLARAVAGEADVPFFYASGSEFDEM-FVGVGASR-VRNLFTAA 416


>gi|213983195|ref|NP_001135501.1| ATPase family, AAA domain containing 1 [Xenopus (Silurana)
           tropicalis]
 gi|195540119|gb|AAI67903.1| Unknown (protein for MGC:135617) [Xenopus (Silurana) tropicalis]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTMIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|154507941|ref|ZP_02043583.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797575|gb|EDN79995.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC
           17982]
          Length = 866

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ L
Sbjct: 571 ELGKRLIGQKDAVRAVSDAVR-RSR-----AGLSDPNRPTGSFLFLGPTGVGKTELAKAL 624

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 625 AEFLFDDERAMVRIDMSEYSEKHSVARLV 653


>gi|118347625|ref|XP_001007289.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|89289056|gb|EAR87044.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 888

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++  A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 433 LPKGALLTGPPGTGKTLLAKACAGEAGVPFFFISGSDFVEM-FVGVGASR-VRDLFKQA 489


>gi|329663402|ref|NP_001192510.1| ATPase family, AAA domain containing 1 [Bos taurus]
 gi|297490712|ref|XP_002698415.1| PREDICTED: ATPase family, AAA domain containing 1 [Bos taurus]
 gi|296472878|gb|DAA14993.1| ATPase family, AAA domain containing 1 [Bos taurus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|78097112|ref|NP_001030174.1| ATPase family AAA domain-containing protein 1 [Rattus norvegicus]
 gi|81908923|sp|Q505J9|ATAD1_RAT RecName: Full=ATPase family AAA domain-containing protein 1
 gi|63101569|gb|AAH94514.1| ATPase family, AAA domain containing 1 [Rattus norvegicus]
 gi|149062717|gb|EDM13140.1| ATPase family, AAA domain containing 1 [Rattus norvegicus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|31377644|ref|NP_116199.2| ATPase family AAA domain-containing protein 1 [Homo sapiens]
 gi|31560168|ref|NP_080763.2| ATPase family AAA domain-containing protein 1 [Mus musculus]
 gi|109089823|ref|XP_001102081.1| PREDICTED: ATPase family AAA domain-containing protein 1 isoform 1
           [Macaca mulatta]
 gi|114631640|ref|XP_001138404.1| PREDICTED: hypothetical protein LOC450580 isoform 2 [Pan
           troglodytes]
 gi|114631642|ref|XP_001138493.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114631644|ref|XP_001138572.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
 gi|114631646|ref|XP_507897.2| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
 gi|194042439|ref|XP_001928012.1| PREDICTED: ATPase family AAA domain-containing protein 1 [Sus
           scrofa]
 gi|291404372|ref|XP_002718538.1| PREDICTED: ATPase family, AAA domain containing 1 [Oryctolagus
           cuniculus]
 gi|301757164|ref|XP_002914430.1| PREDICTED: ATPase family AAA domain-containing protein 1-like
           [Ailuropoda melanoleuca]
 gi|74762551|sp|Q8NBU5|ATAD1_HUMAN RecName: Full=ATPase family AAA domain-containing protein 1
 gi|78099816|sp|Q9D5T0|ATAD1_MOUSE RecName: Full=ATPase family AAA domain-containing protein 1
 gi|12853110|dbj|BAB29643.1| unnamed protein product [Mus musculus]
 gi|22137685|gb|AAH29085.1| Atad1 protein [Mus musculus]
 gi|22761173|dbj|BAC11482.1| unnamed protein product [Homo sapiens]
 gi|26326707|dbj|BAC27097.1| unnamed protein product [Mus musculus]
 gi|26329327|dbj|BAC28402.1| unnamed protein product [Mus musculus]
 gi|28175431|gb|AAH43051.1| ATPase family, AAA domain containing 1 [Mus musculus]
 gi|55957145|emb|CAI16701.1| ATPase family, AAA domain containing 1 [Homo sapiens]
 gi|74139190|dbj|BAE38481.1| unnamed protein product [Mus musculus]
 gi|74207473|dbj|BAE30915.1| unnamed protein product [Mus musculus]
 gi|74219637|dbj|BAE29586.1| unnamed protein product [Mus musculus]
 gi|119570562|gb|EAW50177.1| ATPase family, AAA domain containing 1, isoform CRA_a [Homo
           sapiens]
 gi|119570564|gb|EAW50179.1| ATPase family, AAA domain containing 1, isoform CRA_a [Homo
           sapiens]
 gi|148709781|gb|EDL41727.1| ATPase family, AAA domain containing 1, isoform CRA_a [Mus
           musculus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|238026784|ref|YP_002911015.1| FtsH endopeptidase [Burkholderia glumae BGR1]
 gi|237875978|gb|ACR28311.1| FtsH endopeptidase [Burkholderia glumae BGR1]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|196013470|ref|XP_002116596.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
 gi|190580872|gb|EDV20952.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
          Length = 506

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  ILL+GP G GKT ++R +A  AG PF     ++F E+ +VG    + +R+L   A
Sbjct: 105 LPTGILLIGPPGTGKTLLARAVAGEAGVPFFFCSGSEFDEM-FVGVGAAR-VRNLFAAA 161


>gi|171910598|ref|ZP_02926068.1| negative regulator of genetic competence ClpC/MecB
           [Verrucomicrobium spinosum DSM 4136]
          Length = 846

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + IIGQ +A  A++ ALR R R     ADL+D   P  + + +GPTGVGKT +++ L
Sbjct: 523 ELKKRIIGQDEAVIAISKALR-RSR-----ADLKDPKRPIGSFIFLGPTGVGKTFLAKNL 576

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A     +    I+++++++ E            GYVG
Sbjct: 577 AEFMFGSAESLIQLDMSEYMEKHTASRLIGAPPGYVG 613


>gi|158320208|ref|YP_001512715.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158140407|gb|ABW18719.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 587

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           MPK I+L GP G GKT +++ LA  AG  F+ V  + F ++ Y G
Sbjct: 186 MPKGIILYGPPGTGKTLMAKALASEAGVDFLAVSGSDFVQV-YAG 229


>gi|77166027|ref|YP_344552.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|76884341|gb|ABA59022.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 175 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFENA 244


>gi|28377431|ref|NP_784323.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|254555614|ref|YP_003062031.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308179644|ref|YP_003923772.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|81586545|sp|Q88Z31|FTSH_LACPL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|310943135|sp|C6VKW6|FTSH_LACPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28270263|emb|CAD63164.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|51537265|gb|AAU05734.1| FtsH [Lactobacillus plantarum]
 gi|254044541|gb|ACT61334.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308045135|gb|ADN97678.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 745

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 275


>gi|319775209|ref|YP_004137697.1| protein disaggregation chaperone [Haemophilus influenzae F3047]
 gi|317449800|emb|CBY86008.1| protein disaggregation chaperone [Haemophilus influenzae F3047]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|254827942|ref|ZP_05232629.1| ATP-dependent protease [Listeria monocytogenes FSL N3-165]
 gi|258600324|gb|EEW13649.1| ATP-dependent protease [Listeria monocytogenes FSL N3-165]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483

Query: 78  GA--PFIKVEVTKFTE-----------IGYVGR 97
           G     I++++++F E            GYVG 
Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|213622276|ref|ZP_03375059.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 147

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 52  VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 106

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 107 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 138


>gi|254832257|ref|ZP_05236912.1| ATP-dependent protease [Listeria monocytogenes 10403S]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483

Query: 78  GA--PFIKVEVTKFTE-----------IGYVGR 97
           G     I++++++F E            GYVG 
Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|254255490|ref|ZP_04948806.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158]
 gi|124901227|gb|EAY71977.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 191 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 244

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 245 FVGVGAAR-VRDLFEQA 260


>gi|254252701|ref|ZP_04946019.1| Peptidase M41 [Burkholderia dolosa AUO158]
 gi|124895310|gb|EAY69190.1| Peptidase M41 [Burkholderia dolosa AUO158]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 238


>gi|268555362|ref|XP_002635669.1| C. briggsae CBR-FIGL-1 protein [Caenorhabditis briggsae]
 gi|75005140|sp|Q60QD1|FIGL1_CAEBR RecName: Full=Fidgetin-like protein 1
 gi|187022331|emb|CAP38575.1| CBR-FIGL-1 protein [Caenorhabditis briggsae AF16]
          Length = 591

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G + AK+A+   +   ++R  +   LR    PK +LL GP G GKT I R +A  A A
Sbjct: 318 VAGLEGAKKALKEIVVLPFQRPDIFTGLR--APPKGVLLFGPPGTGKTMIGRCVASQAQA 375

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E+++R L  VA
Sbjct: 376 TFFNISASSLTS-KWVGEG-EKLVRALFSVA 404


>gi|71030708|ref|XP_764996.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351952|gb|EAN32713.1| hypothetical protein TP02_0430 [Theileria parva]
          Length = 881

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL D A
Sbjct: 359 IPKGVLLCGPPGTGKTLLAKAVAGEANVPFYSMSGSDFIEV-FVGIGPSR-VRDLFDKA 415


>gi|325524577|gb|EGD02604.1| FtsH endopeptidase [Burkholderia sp. TJI49]
          Length = 471

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|319948880|ref|ZP_08022993.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4]
 gi|319437482|gb|EFV92489.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4]
          Length = 883

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 515 ELHKRIIGQEDAIKAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568

Query: 74  A 74
           A
Sbjct: 569 A 569


>gi|316973259|gb|EFV56879.1| ATPase, AAA family [Trichinella spiralis]
          Length = 1151

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           +PK  LL+GP G GKT +++ ++  A  PF+ V  T+F EI
Sbjct: 636 LPKGALLLGPPGCGKTLLAKAVSAEASVPFLAVNGTEFVEI 676


>gi|193211748|ref|YP_001997701.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193085225|gb|ACF10501.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 285


>gi|15021761|gb|AAK77908.1|AF397903_1 AAA-metalloprotease FtsH [Pisum sativum]
          Length = 810

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 343 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 396

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 397 FVGVGPSRVRNLFQEARQCAPSIIFI 422


>gi|24987642|pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
          Length = 257

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 14  VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 69  AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 100


>gi|69245450|ref|ZP_00603445.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257879861|ref|ZP_05659514.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257882587|ref|ZP_05662240.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257886015|ref|ZP_05665668.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257891702|ref|ZP_05671355.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257894177|ref|ZP_05673830.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|258614290|ref|ZP_05712060.1| cell division protein FtsH [Enterococcus faecium DO]
 gi|260559533|ref|ZP_05831714.1| peptidase M41 [Enterococcus faecium C68]
 gi|261206684|ref|ZP_05921382.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289565046|ref|ZP_06445500.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|293553699|ref|ZP_06674323.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|293563200|ref|ZP_06677656.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|293570122|ref|ZP_06681202.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|294614893|ref|ZP_06694784.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|294618635|ref|ZP_06698174.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|294623711|ref|ZP_06702544.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|314938208|ref|ZP_07845508.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|314943103|ref|ZP_07849902.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|314949300|ref|ZP_07852643.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
 gi|314952233|ref|ZP_07855248.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|314992091|ref|ZP_07857541.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|314996274|ref|ZP_07861330.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|68195832|gb|EAN10268.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257814089|gb|EEV42847.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257818245|gb|EEV45573.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257821871|gb|EEV49001.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257828062|gb|EEV54688.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257830556|gb|EEV57163.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|260074632|gb|EEW62953.1| peptidase M41 [Enterococcus faecium C68]
 gi|260079177|gb|EEW66870.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289163253|gb|EFD11099.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|291587494|gb|EFF19378.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|291592179|gb|EFF23797.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|291595154|gb|EFF26492.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|291596926|gb|EFF28144.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|291602274|gb|EFF32502.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|291604850|gb|EFF34328.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|313589518|gb|EFR68363.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|313593305|gb|EFR72150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|313595628|gb|EFR74473.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|313598162|gb|EFR77007.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|313642404|gb|EFS06984.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|313644306|gb|EFS08886.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|16803037|ref|NP_464522.1| ATP-dependent protease [Listeria monocytogenes EGD-e]
 gi|47096329|ref|ZP_00233925.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500813|ref|ZP_03669162.1| ATP-dependent protease [Listeria monocytogenes Finland 1988]
 gi|224502688|ref|ZP_03670995.1| ATP-dependent protease [Listeria monocytogenes FSL R2-561]
 gi|254898829|ref|ZP_05258753.1| ATP-dependent protease [Listeria monocytogenes J0161]
 gi|254911682|ref|ZP_05261694.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes J2818]
 gi|254936008|ref|ZP_05267705.1| ATP-dependent protease [Listeria monocytogenes F6900]
 gi|16410399|emb|CAC99075.1| ATP-dependent protease [Listeria monocytogenes EGD-e]
 gi|47015287|gb|EAL06224.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258608596|gb|EEW21204.1| ATP-dependent protease [Listeria monocytogenes F6900]
 gi|293589631|gb|EFF97965.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes J2818]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA + VA A+R R R       L+ +  P  + L VGPTGVGKT + R LAR L 
Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483

Query: 78  GA--PFIKVEVTKFTE-----------IGYVGR 97
           G     I++++++F E            GYVG 
Sbjct: 484 GTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGH 516


>gi|323698297|ref|ZP_08110209.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. ND132]
 gi|323458229|gb|EGB14094.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           ND132]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 188 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240


>gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 593

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 184 LPKGALLVGPPGTGKTLLAQAVAGEANVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 240


>gi|302809402|ref|XP_002986394.1| hypothetical protein SELMODRAFT_123803 [Selaginella moellendorffii]
 gi|300145930|gb|EFJ12603.1| hypothetical protein SELMODRAFT_123803 [Selaginella moellendorffii]
          Length = 386

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT +  P    +E+    + +Q+ + AV + L +    +QL  D      PK +LL G  
Sbjct: 122 LTDSLRPEVTYAEIGGLELQKQEIREAVELPLTHPELYRQLGVD-----PPKGVLLYGAP 176

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT + + +A    A FI+V  ++F +  Y+G    +++RD+ ++A
Sbjct: 177 GTGKTMLVKAVAHHTSAAFIRVVASEFVQ-KYLGEG-PRMMRDVFNLA 222


>gi|296220688|ref|XP_002756413.1| PREDICTED: ATPase family AAA domain-containing protein 1
           [Callithrix jacchus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|312194050|ref|YP_004014111.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c]
 gi|311225386|gb|ADP78241.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c]
          Length = 836

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQQ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHRRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592


>gi|257871357|ref|ZP_05651010.1| peptidase M41 [Enterococcus gallinarum EG2]
 gi|257805521|gb|EEV34343.1| peptidase M41 [Enterococcus gallinarum EG2]
          Length = 697

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|240147503|ref|ZP_04746104.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257200292|gb|EEU98576.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 511

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279


>gi|260814842|ref|XP_002602122.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae]
 gi|229287429|gb|EEN58134.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    + +R+L   A
Sbjct: 300 LPKGVLLVGPPGTGKTLLARAVAGEADVPFFYASGSEFDEM-FVGVGASR-VRNLFTAA 356


>gi|167562363|ref|ZP_02355279.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           EO147]
 gi|167574340|ref|ZP_02367214.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           C6786]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|15602303|ref|NP_245375.1| hypothetical protein PM0438 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720692|gb|AAK02522.1| FtsH [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238


>gi|304321217|ref|YP_003854860.1| metalloprotease [Parvularcula bermudensis HTCC2503]
 gi|303300119|gb|ADM09718.1| metalloprotease [Parvularcula bermudensis HTCC2503]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|332289023|ref|YP_004419875.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
 gi|330431919|gb|AEC16978.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
          Length = 857

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    I++++++F E   V R V
Sbjct: 619 ANFLFDSEDAMIRIDMSEFMEKHSVSRLV 647


>gi|296535982|ref|ZP_06898128.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
 gi|296263693|gb|EFH10172.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|257868305|ref|ZP_05647958.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257874422|ref|ZP_05654075.1| peptidase M41 [Enterococcus casseliflavus EC10]
 gi|257802419|gb|EEV31291.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257808586|gb|EEV37408.1| peptidase M41 [Enterococcus casseliflavus EC10]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276


>gi|300768964|ref|ZP_07078855.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493485|gb|EFK28662.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 750

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 280


>gi|221209996|ref|ZP_03582977.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1]
 gi|221170684|gb|EEE03150.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|170783529|ref|YP_001742022.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1]
 gi|150035016|gb|ABR67027.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R  A  AG PF  +  ++F E  +G     V ++ +   + A
Sbjct: 255 PKGVLLSGPPGTGKTLLARATAGEAGVPFFHISSSEFIEMVVGVGASRVRELFQAAREAA 314

Query: 111 INIV 114
            +I+
Sbjct: 315 PSII 318


>gi|144897904|emb|CAM74768.1| ATP-dependent Zn proteases [Magnetospirillum gryphiswaldense MSR-1]
          Length = 642

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|159043170|ref|YP_001531964.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12]
 gi|157910930|gb|ABV92363.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12]
          Length = 871

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+ R +IGQ+ A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 563 EIGRRVIGQKTAVNAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 617 AEFLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|72388294|ref|XP_844571.1| ATP-dependent zinc metallopeptidase [Trypanosoma brucei TREU927]
 gi|62175363|gb|AAX69506.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei]
 gi|62359685|gb|AAX80117.1| AFG3-like protein 2, putative [Trypanosoma brucei]
 gi|70801104|gb|AAZ11012.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           ++I G ++AK+ V      LR+  R   L A +     P   LL+GP G GKT +++ +A
Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAKV-----PTGALLLGPPGTGKTLLAKAVA 364

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G  FI V  + F E+ YVG    + +R L +VA
Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALR-VRQLFEVA 398


>gi|19076014|ref|NP_588514.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1
           (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74582247|sp|O59824|YME1_SCHPO RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|3136033|emb|CAA19064.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1
           (predicted) [Schizosaccharomyces pombe]
          Length = 709

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  A  PF  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 299 LPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEM-YVGVGAKR-VRELFAAA 355


>gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400]
 gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
          Length = 659

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R ++L   +     PK +L+VG  G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 189 LRNAERYRRLGGKI-----PKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSAFVEM- 242

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 243 FVGVGAAR-VRDLFEQA 258


>gi|53718995|ref|YP_107981.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|53725545|ref|YP_102540.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76811845|ref|YP_333019.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121598236|ref|YP_992623.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124386453|ref|YP_001026575.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126439432|ref|YP_001058525.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126448487|ref|YP_001080140.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|126452144|ref|YP_001065785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|134282887|ref|ZP_01769590.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|167002789|ref|ZP_02268579.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|167719065|ref|ZP_02402301.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei DM98]
 gi|167738063|ref|ZP_02410837.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
 gi|167815247|ref|ZP_02446927.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 91]
 gi|167845200|ref|ZP_02470708.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           B7210]
 gi|167893752|ref|ZP_02481154.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
 gi|167902200|ref|ZP_02489405.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei NCTC
           13177]
 gi|167910442|ref|ZP_02497533.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
 gi|167918468|ref|ZP_02505559.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
 gi|217423524|ref|ZP_03455025.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237811779|ref|YP_002896230.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238563620|ref|ZP_00438574.2| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242316664|ref|ZP_04815680.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254177646|ref|ZP_04884301.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|254180202|ref|ZP_04886801.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|254188379|ref|ZP_04894890.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198030|ref|ZP_04904452.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254199451|ref|ZP_04905817.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|254205764|ref|ZP_04912116.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|254258466|ref|ZP_04949520.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254298036|ref|ZP_04965489.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|254358835|ref|ZP_04975108.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|52209409|emb|CAH35354.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|52428968|gb|AAU49561.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76581298|gb|ABA50773.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121227046|gb|ABM49564.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124294473|gb|ABN03742.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126218925|gb|ABN82431.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126225786|gb|ABN89326.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|126241357|gb|ABO04450.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|134245973|gb|EBA46064.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|147749047|gb|EDK56121.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|147753207|gb|EDK60272.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|148027962|gb|EDK85983.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|157807652|gb|EDO84822.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157936058|gb|EDO91728.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698685|gb|EDP88655.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|169654771|gb|EDS87464.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|184210742|gb|EDU07785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|217393382|gb|EEC33403.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237505527|gb|ACQ97845.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238520336|gb|EEP83797.1| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242139903|gb|EES26305.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|243061550|gb|EES43736.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|254217155|gb|EET06539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|296448894|ref|ZP_06890716.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296253598|gb|EFH00803.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 478

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 25  IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 81


>gi|300780448|ref|ZP_07090304.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium genitalium ATCC 33030]
 gi|300534558|gb|EFK55617.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium genitalium ATCC 33030]
          Length = 967

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT + S R   +  EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 521 FKLTESESSRLLHMEDELHQRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 574

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 575 FAGPSGVGKTELSKALAEF 593


>gi|215413520|ref|ZP_03422192.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298527075|ref|ZP_07014484.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496869|gb|EFI32163.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|260809218|ref|XP_002599403.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
 gi|229284681|gb|EEN55415.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 155 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKLVRALFAVA 210


>gi|197264149|ref|ZP_03164223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242404|gb|EDY25024.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|189353088|ref|YP_001948715.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|189337110|dbj|BAG46179.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|134046686|ref|YP_001098171.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664311|gb|ABO35957.1| AAA ATPase, central domain protein [Methanococcus maripaludis C5]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ DAK+   I ++          ++  E  PKNIL  G  G GKT ++R LA     
Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGSPGTGKTMLARALATETEV 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T+   IG +VG   +QI
Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204


>gi|161525193|ref|YP_001580205.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189350068|ref|YP_001945696.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221201969|ref|ZP_03575005.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
 gi|221204901|ref|ZP_03577918.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221213878|ref|ZP_03586851.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|160342622|gb|ABX15708.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189334090|dbj|BAG43160.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221166055|gb|EED98528.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|221175758|gb|EEE08188.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221178052|gb|EEE10463.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
 gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
          Length = 546

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|21672643|ref|NP_660710.1| cell division protein FtsH [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008486|sp|Q8K9G8|FTSH_BUCAP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|21623278|gb|AAM67921.1| cell division [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEHA 240


>gi|684978|dbj|BAA03839.1| OSD1 [Saccharomyces cerevisiae]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365


>gi|323452123|gb|EGB07998.1| hypothetical protein AURANDRAFT_71725 [Aureococcus anophagefferens]
          Length = 1039

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            P+ ++L GP G GKT ++R +A  AG PFI    ++F E+ +VG    +I
Sbjct: 194 CPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRI 243


>gi|319897647|ref|YP_004135844.1| protein disaggregation chaperone [Haemophilus influenzae F3031]
 gi|317433153|emb|CBY81527.1| protein disaggregation chaperone [Haemophilus influenzae F3031]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|301169578|emb|CBW29179.1| protein disaggregation chaperone [Haemophilus influenzae 10810]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|302755941|ref|XP_002961394.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
 gi|302798232|ref|XP_002980876.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300151415|gb|EFJ18061.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300170053|gb|EFJ36654.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK +LLVGP G GKT +++ +A  AG PF     ++F E  +G   R V  + +     
Sbjct: 250 LPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRTLFQTAKKK 309

Query: 110 AINIV 114
           A  IV
Sbjct: 310 APCIV 314


>gi|295103896|emb|CBL01440.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii SL3/3]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + +IGQ +A   VA A++ R R     ADL     P + + VGPTGVGKT + ++LA 
Sbjct: 454 LKQKVIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQLAE 507

Query: 76  L---AGAPFIKVEVTKFTEIGYVGRNV 99
                  P I+++++++ E   V R +
Sbjct: 508 QLFDGPDPLIRLDMSEYMEKYAVSRMI 534


>gi|261820121|ref|YP_003258227.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
 gi|261604134|gb|ACX86620.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|253686967|ref|YP_003016157.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753545|gb|ACT11621.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|224052230|ref|XP_002186992.1| PREDICTED: ATPase family, AAA domain containing 1 [Taeniopygia
           guttata]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|198242374|ref|YP_002217268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936890|gb|ACH74223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|167836219|ref|ZP_02463102.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           MSMB43]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|167823656|ref|ZP_02455127.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226196166|ref|ZP_03791751.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931752|gb|EEH27754.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|124028002|ref|YP_001013322.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM
           5456]
 gi|123978696|gb|ABM80977.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM
           5456]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A +  A FI+V  ++F    YVG    +I+R++  +A
Sbjct: 165 PKGVLLYGPPGCGKTLLAKAVASMTNATFIRVVASEFVH-KYVGEGA-RIVREVFKLA 220


>gi|113460868|ref|YP_718935.1| FtsH peptidase [Haemophilus somnus 129PT]
 gi|112822911|gb|ABI25000.1| membrane protease FtsH catalytic subunit [Haemophilus somnus 129PT]
          Length = 612

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPKGILMVGPPGTGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|62181804|ref|YP_218221.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194442507|ref|YP_002042552.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447870|ref|YP_002047324.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471603|ref|ZP_03077587.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195873641|ref|ZP_02697399.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197248059|ref|YP_002148220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205357195|ref|ZP_02345811.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205358490|ref|ZP_02656962.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359196|ref|ZP_02668061.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205359745|ref|ZP_02831638.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360607|ref|ZP_02684667.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|62129437|gb|AAX67140.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401170|gb|ACF61392.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406174|gb|ACF66393.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457967|gb|EDX46806.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633776|gb|EDX52190.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211762|gb|ACH49159.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205323245|gb|EDZ11084.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333758|gb|EDZ20522.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337763|gb|EDZ24527.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343557|gb|EDZ30321.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348591|gb|EDZ35222.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322716291|gb|EFZ07862.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|16800065|ref|NP_470333.1| ATP-dependent protease [Listeria innocua Clip11262]
 gi|16413455|emb|CAC96227.1| ATP-dependent protease [Listeria innocua Clip11262]
          Length = 724

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   +IGQ DA + VA A+R R R       L+ +  P  + L VGPTGVGKT 
Sbjct: 420 KNLESNLTGKVIGQDDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 473

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           + R LAR L G     I++++++F E            GYVG 
Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516


>gi|87122250|ref|ZP_01078133.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp.
           MED121]
 gi|86162570|gb|EAQ63852.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp.
           MED121]
          Length = 859

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL   +IGQ++A  AVA A+R R R     + L D   P  + L +GPTGVGKT + + 
Sbjct: 565 NELHASVIGQEEAVTAVANAVR-RSR-----SGLADPNRPNGSFLFLGPTGVGKTELCKS 618

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA       A  ++V++++F E   V R
Sbjct: 619 LATFLFDTEASMVRVDMSEFMEKHSVAR 646


>gi|329894887|ref|ZP_08270686.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC3088]
 gi|328922616|gb|EGG29951.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC3088]
          Length = 764

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 12/75 (16%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A L+ E  P  + LL GPTGVGKT ++R+LA + G   I+ +++++ E            
Sbjct: 482 AGLKSEHKPIGSFLLAGPTGVGKTEVTRQLATMLGLELIRFDMSEYMERHTVSRLIGAPP 541

Query: 93  GYVGRNVEQIIRDLV 107
           GYVG +   ++ D V
Sbjct: 542 GYVGFDQGGLLTDAV 556


>gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18]
 gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 280


>gi|300022148|ref|YP_003754759.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523969|gb|ADJ22438.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 816

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRL 73
           +L R + GQ  A  A++ A++         A LR+   P    L  GPTGVGKT ++++L
Sbjct: 462 DLKRLVFGQDKAIEALSSAIKLAR------AGLREPEKPIGCYLFSGPTGVGKTEVAKQL 515

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A L G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 ANLMGVELLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 567


>gi|194735810|ref|YP_002116244.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301021|ref|ZP_02663053.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|200387470|ref|ZP_03214082.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|194711312|gb|ACF90533.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289144|gb|EDY28513.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604568|gb|EDZ03113.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|190407968|gb|EDV11233.1| hypothetical protein SCRG_02514 [Saccharomyces cerevisiae RM11-1a]
 gi|256272000|gb|EEU07017.1| Yme1p [Saccharomyces cerevisiae JAY291]
 gi|323335127|gb|EGA76417.1| Yme1p [Saccharomyces cerevisiae Vin13]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365


>gi|163815425|ref|ZP_02206798.1| hypothetical protein COPEUT_01588 [Coprococcus eutactus ATCC 27759]
 gi|158449062|gb|EDP26057.1| hypothetical protein COPEUT_01588 [Coprococcus eutactus ATCC 27759]
          Length = 825

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT   S R  ++ +EL + ++GQ++A  AVA A++ R R       L+D   P    L 
Sbjct: 492 KLTEKESKRLEKLETELHKRVVGQEEAVSAVAKAIK-RSR-----VGLKDPRRPIGTFLF 545

Query: 59  VGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT +S+ LA +        I+V+++++ E            GYVG
Sbjct: 546 LGPTGVGKTELSKALADVVFGSEDALIRVDMSEYMEKHSVSKLIGSPPGYVG 597


>gi|29831240|ref|NP_825874.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
 gi|29608355|dbj|BAC72409.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
           MA-4680]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|145628239|ref|ZP_01784040.1| ClpB [Haemophilus influenzae 22.1-21]
 gi|145638337|ref|ZP_01793947.1| ClpB [Haemophilus influenzae PittII]
 gi|144980014|gb|EDJ89673.1| ClpB [Haemophilus influenzae 22.1-21]
 gi|145272666|gb|EDK12573.1| ClpB [Haemophilus influenzae PittII]
 gi|309751479|gb|ADO81463.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           R2866]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|332212224|ref|XP_003255219.1| PREDICTED: ATPase family AAA domain-containing protein 1 [Nomascus
           leucogenys]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|332288653|ref|YP_004419505.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179]
 gi|330431549|gb|AEC16608.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|329122865|ref|ZP_08251437.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116]
 gi|327472129|gb|EGF17567.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|315635103|ref|ZP_07890381.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393]
 gi|315476065|gb|EFU66819.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|306836929|ref|ZP_07469881.1| cell division protein HflB [Corynebacterium accolens ATCC 49726]
 gi|304567184|gb|EFM42797.1| cell division protein HflB [Corynebacterium accolens ATCC 49726]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVG 242


>gi|289643372|ref|ZP_06475494.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata]
 gi|289506824|gb|EFD27801.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata]
          Length = 834

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQQ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHRRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592


>gi|261327758|emb|CBH10735.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 877

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           ++I G ++AK+ V      LR+  R   L A +     P   LL+GP G GKT +++ +A
Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAKV-----PTGALLLGPPGTGKTLLAKAVA 364

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G  FI V  + F E+ YVG    + +R L +VA
Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALR-VRQLFEVA 398


>gi|254436354|ref|ZP_05049860.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|207088044|gb|EDZ65317.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 172 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFENA 241


>gi|531752|emb|CAA56954.1| YTA11 [Saccharomyces cerevisiae]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365


>gi|50749260|ref|XP_421556.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|83718920|ref|YP_443288.1| cell division protein FtsH [Burkholderia thailandensis E264]
 gi|167582304|ref|ZP_02375178.1| cell division protein FtsH [Burkholderia thailandensis TXDOH]
 gi|167621274|ref|ZP_02389905.1| cell division protein FtsH [Burkholderia thailandensis Bt4]
 gi|257139524|ref|ZP_05587786.1| cell division protease FtsH [Burkholderia thailandensis E264]
 gi|83652745|gb|ABC36808.1| cell division protein FtsH [Burkholderia thailandensis E264]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|77163807|ref|YP_342332.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|254436287|ref|ZP_05049794.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|123730722|sp|Q3JEE4|FTSH_NITOC RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|76882121|gb|ABA56802.1| Peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|207089398|gb|EDZ66670.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 213 IPKGILLVGRPGTGKTLLARAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 269


>gi|6325281|ref|NP_015349.1| Yme1p [Saccharomyces cerevisiae S288c]
 gi|418575|sp|P32795|YME1_YEAST RecName: Full=Mitochondrial inner membrane i-AAA protease
           supercomplex subunit YME1; AltName: Full=Protein OSD1;
           AltName: Full=Tat-binding homolog 11; AltName:
           Full=Yeast mitochondrial escape protein 1
 gi|295582|gb|AAA02883.1| putative ATPase [Saccharomyces cerevisiae]
 gi|809589|emb|CAA89278.1| Yme1p [Saccharomyces cerevisiae]
 gi|1314098|emb|CAA95020.1| Yme1p [Saccharomyces cerevisiae]
 gi|151942813|gb|EDN61159.1| mitochondrial escape protein [Saccharomyces cerevisiae YJM789]
 gi|285815558|tpg|DAA11450.1| TPA: Yme1p [Saccharomyces cerevisiae S288c]
          Length = 747

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IRDL
Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365


>gi|170717398|ref|YP_001784502.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336]
 gi|168825527|gb|ACA30898.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336]
          Length = 609

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|332685804|ref|YP_004455578.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
 gi|332369813|dbj|BAK20769.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 218 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 274


>gi|328353874|emb|CCA40271.1| AFG3 family protein [Pichia pastoris CBS 7435]
          Length = 749

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ 
Sbjct: 293 LKNPKKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 346

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 347 FVGVGASR-VRDLFQQA 362


>gi|317507816|ref|ZP_07965517.1| ATPase [Segniliparus rugosus ATCC BAA-974]
 gi|316253858|gb|EFV13227.1| ATPase [Segniliparus rugosus ATCC BAA-974]
          Length = 842

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA  AVA A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 515 ELHKRIIGQRDAVAAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568

Query: 74  A 74
           A
Sbjct: 569 A 569


>gi|300113260|ref|YP_003759835.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299539197|gb|ADJ27514.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 173 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFENA 242


>gi|288560704|ref|YP_003424190.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium
           M1]
 gi|288543414|gb|ADC47298.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium
           M1]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 29/147 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +++  LD  II   + K  V + L++    +++  D      PK ILL GP G GKT ++
Sbjct: 165 DMIGGLDEQII---EVKETVELPLKHPELFEKVGID-----PPKGILLYGPPGTGKTLLA 216

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS--I 128
           + +A    A FIKV  ++F +  Y+G    +++R++ ++A            +E+A   I
Sbjct: 217 KAVANETNATFIKVVASEFVK-KYIGEGA-RMVREVFELA------------KEKAPSII 262

Query: 129 NAEERILDALVG---KTATSNTREVFR 152
             +E  LDA+     K++TS  REV R
Sbjct: 263 FIDE--LDAVAAQRLKSSTSGDREVQR 287


>gi|302870292|ref|YP_003838929.1| ATPase AAA-2 domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315503432|ref|YP_004082319.1| atpase aaa-2 domain protein [Micromonospora sp. L5]
 gi|302573151|gb|ADL49353.1| ATPase AAA-2 domain protein [Micromonospora aurantiaca ATCC 27029]
 gi|315410051|gb|ADU08168.1| ATPase AAA-2 domain protein [Micromonospora sp. L5]
          Length = 845

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592


>gi|255085836|ref|XP_002505349.1| predicted protein [Micromonas sp. RCC299]
 gi|226520618|gb|ACO66607.1| predicted protein [Micromonas sp. RCC299]
          Length = 328

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT I R +A   GA F  +  +  T   ++G   E+++R L  VA
Sbjct: 55  VPRGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVA 111


>gi|85375462|ref|YP_459524.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84788545|gb|ABC64727.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 792

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   + GQ  A + ++ A++         A LRD   P  + L  GPTGVGKT ++R+L
Sbjct: 464 DLKHVVFGQDPAVKKLSTAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARQL 517

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A + G    + +++++ E            GYVG +   ++ D VD   + V
Sbjct: 518 ASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHCV 569


>gi|327279352|ref|XP_003224420.1| PREDICTED: ATPase family AAA domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 135 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 176


>gi|66358074|ref|XP_626215.1| katanin p60/fidgetin family with AAA ATpase [Cryptosporidium parvum
           Iowa II]
 gi|46227042|gb|EAK87992.1| katanin p60/fidgetin family with AAA ATpase [Cryptosporidium parvum
           Iowa II]
          Length = 537

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+  +SE D  +IG +  K+ + + + N  +R  L   L     P+ ILL GP G GKT 
Sbjct: 250 PKNFISEKD--VIGLESIKKMLRVKIINPIQRPDLHVGLHS--APRGILLFGPPGTGKTM 305

Query: 69  ISRRLARLAGAPFIKV 84
           +++ +A    A F  V
Sbjct: 306 LAKWIASECKASFYDV 321


>gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
 gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 280


>gi|255081660|ref|XP_002508052.1| predicted protein [Micromonas sp. RCC299]
 gi|226523328|gb|ACO69310.1| predicted protein [Micromonas sp. RCC299]
          Length = 509

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++L GP G GKT ++R +A  +GA F  +  ++F E+ +VG    + +RDL   A
Sbjct: 43  VPKGVMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEM-FVGVGAAR-VRDLFSQA 99


>gi|303281951|ref|XP_003060267.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457738|gb|EEH55036.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 327

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT I R +A   GA F  +  +  T   ++G   E+++R L  VA
Sbjct: 55  VPRGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVA 111


>gi|126272654|ref|XP_001363365.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|150018964|ref|YP_001311218.1| ATPase [Clostridium beijerinckii NCIMB 8052]
 gi|149905429|gb|ABR36262.1| ATPase AAA-2 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 47  LRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           L DE  P  ++L VGPTGVGKT I+R L++  G   I+ +++++TE
Sbjct: 493 LNDEDKPVASMLFVGPTGVGKTEIARCLSKTLGIDLIRFDMSEYTE 538


>gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|332086388|gb|EGI91535.1| cell division protease ftsH [Shigella dysenteriae 155-74]
          Length = 536

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 46  VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 100

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 101 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 132


>gi|329120416|ref|ZP_08249082.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462100|gb|EGF08428.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 682

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 MPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|323191862|gb|EFZ77110.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 625

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 135 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 189

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 221


>gi|251793445|ref|YP_003008174.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700]
 gi|247534841|gb|ACS98087.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700]
          Length = 856

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    +++++++F E   V R V
Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|238061431|ref|ZP_04606140.1| ATPase [Micromonospora sp. ATCC 39149]
 gi|237883242|gb|EEP72070.1| ATPase [Micromonospora sp. ATCC 39149]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 489 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 542

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 543 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 571


>gi|224824151|ref|ZP_03697259.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
 gi|224603570|gb|EEG09745.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
          Length = 652

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 216 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 272


>gi|215408565|emb|CAR31132.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408569|emb|CAR31134.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408575|emb|CAR31137.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 162

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 56  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 114

Query: 112 N 112
           N
Sbjct: 115 N 115


>gi|187731936|ref|YP_001881907.1| ATP-dependent metalloprotease [Shigella boydii CDC 3083-94]
 gi|187428928|gb|ACD08202.1| ATP-dependent metallopeptidase HflB [Shigella boydii CDC 3083-94]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|121607214|ref|YP_995021.1| ATP-dependent metalloprotease FtsH [Verminephrobacter eiseniae
           EF01-2]
 gi|121551854|gb|ABM56003.1| membrane protease FtsH catalytic subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 209 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFDNA 265


>gi|157158704|ref|YP_001464653.1| ATP-dependent metalloprotease [Escherichia coli E24377A]
 gi|157162661|ref|YP_001459979.1| ATP-dependent metalloprotease [Escherichia coli HS]
 gi|188491848|ref|ZP_02999118.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|191168060|ref|ZP_03029860.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194430224|ref|ZP_03062722.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|237706070|ref|ZP_04536551.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253771988|ref|YP_003034819.1| ATP-dependent metalloprotease [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038343|ref|ZP_04872401.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|293406787|ref|ZP_06650713.1| hflB [Escherichia coli FVEC1412]
 gi|293412550|ref|ZP_06655273.1| hflB [Escherichia coli B354]
 gi|298382528|ref|ZP_06992125.1| hflB [Escherichia coli FVEC1302]
 gi|301025977|ref|ZP_07189460.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|307313117|ref|ZP_07592743.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|332279991|ref|ZP_08392404.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|746401|gb|AAA97508.1| ATP-binding protein [Escherichia coli]
 gi|157068341|gb|ABV07596.1| ATP-dependent metallopeptidase HflB [Escherichia coli HS]
 gi|157080734|gb|ABV20442.1| ATP-dependent metallopeptidase HflB [Escherichia coli E24377A]
 gi|188487047|gb|EDU62150.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|190901929|gb|EDV61678.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194411725|gb|EDX28049.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|226839967|gb|EEH71988.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|226899110|gb|EEH85369.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253323032|gb|ACT27634.1| ATP-dependent metalloprotease FtsH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447795|gb|ACX38217.1| ATP-dependent metalloprotease FtsH [Escherichia coli DH1]
 gi|284923201|emb|CBG36295.1| cell division protein [Escherichia coli 042]
 gi|291426793|gb|EFE99825.1| hflB [Escherichia coli FVEC1412]
 gi|291469321|gb|EFF11812.1| hflB [Escherichia coli B354]
 gi|294491080|gb|ADE89836.1| ATP-dependent metallopeptidase HflB [Escherichia coli IHE3034]
 gi|298277668|gb|EFI19184.1| hflB [Escherichia coli FVEC1302]
 gi|299879903|gb|EFI88114.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|306907028|gb|EFN37536.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|313648580|gb|EFS13022.1| cell division protease ftsH [Shigella flexneri 2a str. 2457T]
 gi|315062484|gb|ADT76811.1| protease, ATP-dependent zinc-metallo [Escherichia coli W]
 gi|315137764|dbj|BAJ44923.1| hflB [Escherichia coli DH1]
 gi|323376928|gb|ADX49196.1| ATP-dependent metalloprotease FtsH [Escherichia coli KO11]
 gi|332102343|gb|EGJ05689.1| ATP-dependent metalloprotease [Shigella sp. D9]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|300113088|ref|YP_003759663.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299539025|gb|ADJ27342.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 214 IPKGILLVGRPGTGKTLLARAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 270


>gi|255713350|ref|XP_002552957.1| KLTH0D05412p [Lachancea thermotolerans]
 gi|238934337|emb|CAR22519.1| KLTH0D05412p [Lachancea thermotolerans]
          Length = 813

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT I++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 375 IPRGAILSGPPGTGKTLIAKATAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDLFKTA 431


>gi|227328604|ref|ZP_03832628.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 646

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|227113767|ref|ZP_03827423.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 646

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|326625046|gb|EGE31391.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|221106412|ref|XP_002168533.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 314

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT +++  A+ AG  FI ++++  T+  Y
Sbjct: 121 PKGVLLYGPPGCGKTMVAKATAKEAGCRFINLDISSLTDKWY 162


>gi|254472239|ref|ZP_05085639.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062]
 gi|211958522|gb|EEA93722.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062]
          Length = 859

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQQ+A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKRVVGQQEAVHAVSTAVR-RSR-----AGLQDPNRPIGSFMFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          ++V++++F E   V R
Sbjct: 620 ASYLFDDETAMVRVDMSEFMEKHSVAR 646


>gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK     V   LR+  +  QL A L     PK ILL+GP G GKT +++ +A  
Sbjct: 237 VCGMDEAKNELEDVVDYLRDPDKFTQLGAKL-----PKGILLIGPPGTGKTLLAKAVAGE 291

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +G PF     ++F E+ +VG    +I
Sbjct: 292 SGVPFFYTAGSEFDEM-FVGIGASRI 316


>gi|154426126|gb|AAI51347.1| ATAD1 protein [Bos taurus]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 134 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 175


>gi|16762058|ref|NP_457675.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766592|ref|NP_462207.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143547|ref|NP_806889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415225|ref|YP_152300.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161506141|ref|YP_001573253.1| ATP-dependent metalloprotease [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616303|ref|YP_001590268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197364155|ref|YP_002143792.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205354197|ref|YP_002227998.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858544|ref|YP_002245195.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052988|ref|ZP_03345866.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425426|ref|ZP_03358176.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852786|ref|ZP_03382318.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224585091|ref|YP_002638890.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910089|ref|ZP_04653926.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825807|ref|ZP_06544975.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|54037122|sp|P63344|FTSH_SALTI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|54040797|sp|P63343|FTSH_SALTY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|25308063|pir||AG0902 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421854|gb|AAL22166.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504361|emb|CAD07813.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139181|gb|AAO70749.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56129482|gb|AAV78988.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|160867488|gb|ABX24111.1| hypothetical protein SARI_04329 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365667|gb|ABX69435.1| hypothetical protein SPAB_04111 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197095632|emb|CAR61200.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273978|emb|CAR38984.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710347|emb|CAR34705.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469619|gb|ACN47449.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248461|emb|CBG26298.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995493|gb|ACY90378.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159845|emb|CBW19364.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914320|dbj|BAJ38294.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087740|emb|CBY97504.1| cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225979|gb|EFX51033.1| Cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615299|gb|EFY12220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618342|gb|EFY15233.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622853|gb|EFY19697.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626825|gb|EFY23622.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631394|gb|EFY28154.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635339|gb|EFY32053.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643338|gb|EFY39902.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647090|gb|EFY43591.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648893|gb|EFY45338.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655085|gb|EFY51396.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657688|gb|EFY53956.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664184|gb|EFY60382.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667467|gb|EFY63629.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674715|gb|EFY70807.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675652|gb|EFY71725.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682288|gb|EFY78311.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684891|gb|EFY80889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131655|gb|ADX19085.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323199021|gb|EFZ84118.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204279|gb|EFZ89288.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207626|gb|EFZ92573.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211321|gb|EFZ96165.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214737|gb|EFZ99486.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221217|gb|EGA05643.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224042|gb|EGA08335.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230309|gb|EGA14428.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233285|gb|EGA17379.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239322|gb|EGA23372.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242427|gb|EGA26453.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246937|gb|EGA30903.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254130|gb|EGA37950.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255247|gb|EGA39024.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262710|gb|EGA46266.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264020|gb|EGA47528.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269406|gb|EGA52861.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326629318|gb|EGE35661.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990153|gb|AEF09136.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|326794632|ref|YP_004312452.1| ATP-dependent Clp protease ATP-binding subunit clpA [Marinomonas
           mediterranea MMB-1]
 gi|326545396|gb|ADZ90616.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           mediterranea MMB-1]
          Length = 756

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 11/97 (11%)

Query: 6   NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60
           N   R+++  L+R     + GQ +A   ++ A++    R  L AD +    P  + L+ G
Sbjct: 442 NSDDRKVLGNLERNLKMVVFGQDEAIETLSDAIK--LSRAGLKADQK----PIGSFLMAG 495

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT ++R+LA+  G   I+ +++++ E   V R
Sbjct: 496 PTGVGKTEVTRQLAKQMGLELIRFDMSEYMERHAVSR 532


>gi|325284113|ref|YP_004256654.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324315922|gb|ADY27037.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 625

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  AG P+  V  + F E+ +VG    + +RDL + A
Sbjct: 191 IPHGLLLVGPPGSGKTLLAKAVAGEAGVPYFAVSGSDFVEM-FVGVGAAR-VRDLFEQA 247


>gi|260596195|ref|YP_003208766.1| ATP-dependent metalloprotease [Cronobacter turicensis z3032]
 gi|260215372|emb|CBA27389.1| Cell division protease ftsH [Cronobacter turicensis z3032]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|251792626|ref|YP_003007352.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534019|gb|ACS97265.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|193217037|ref|YP_002000279.1| cell division protein FtsH [Mycoplasma arthritidis 158L3-1]
 gi|310946748|sp|B3PNH3|FTSH_MYCA5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|193002360|gb|ACF07575.1| cell division protein FtsH [Mycoplasma arthritidis 158L3-1]
          Length = 744

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL GP G GKT I++  A  A  PF  +  + F E+ +VG   ++ +RD+ + A
Sbjct: 256 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEM-FVGLGAKR-VRDMFEEA 312


>gi|170682536|ref|YP_001745450.1| ATP-dependent metalloprotease [Escherichia coli SMS-3-5]
 gi|170520254|gb|ACB18432.1| ATP-dependent metallopeptidase HflB [Escherichia coli SMS-3-5]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|159040200|ref|YP_001539453.1| ATPase [Salinispora arenicola CNS-205]
 gi|157919035|gb|ABW00463.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
          Length = 844

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592


>gi|62201535|gb|AAH92265.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus
           musculus]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMHADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|39971519|ref|XP_367150.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|59802930|gb|AAX07670.1| MSP1 protein-like protein [Magnaporthe grisea]
 gi|145019539|gb|EDK03767.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 151 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 206


>gi|115358624|ref|YP_775762.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD]
 gi|115283912|gb|ABI89428.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria
           AMMD]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|189499094|ref|YP_001958564.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
 gi|189494535|gb|ACE03083.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 220 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 272


>gi|67602049|ref|XP_666447.1| AAA family ATPase [Cryptosporidium hominis TU502]
 gi|54657443|gb|EAL36216.1| AAA family ATPase [Cryptosporidium hominis]
          Length = 536

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L+    P+  +SE D  +IG +  K+ + + + N  +R  L   L     P+ ILL GP 
Sbjct: 243 LSIRTEPKNFISEKD--VIGLESIKKMLRVKIINPIQRPDLHVGLHS--APRGILLFGPP 298

Query: 63  GVGKTAISRRLARLAGAPFIKV 84
           G GKT +++ +A    A F  V
Sbjct: 299 GTGKTMLAKWIASECKASFYDV 320


>gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 720

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + K +LLVGP G GKT ++R +A  A  PF     ++F EI +VG    + IR+L   A
Sbjct: 320 LQKGVLLVGPPGTGKTLLARAIAGEANVPFFHASGSEFDEI-FVGEGARR-IRNLFKSA 376


>gi|187934823|ref|YP_001887468.1| Cell division protease FtsH homolog [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722976|gb|ACD24197.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 694

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + V   L    R  ++ A L     PK  LLVGP G GKT I++ +A  
Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
           A  PF  +  + F E  +G     V ++ ++ V  A  I+
Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVAKAPCII 266


>gi|149921067|ref|ZP_01909526.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
 gi|149818071|gb|EDM77528.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+GP G GKT ++R +A  AG  F  +  + F E+ +VG    + +RDL +
Sbjct: 195 IPKGVLLMGPPGTGKTLLARAIAGEAGVAFFSISGSDFVEM-FVGVGASR-VRDLFE 249


>gi|159037791|ref|YP_001537044.1| ATPase [Salinispora arenicola CNS-205]
 gi|157916626|gb|ABV98053.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
          Length = 836

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592


>gi|113868415|ref|YP_726904.1| FtsH endopeptidase [Ralstonia eutropha H16]
 gi|113527191|emb|CAJ93536.1| FtsH endopeptidase [Ralstonia eutropha H16]
          Length = 627

 Score = 43.5 bits (101), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|296284801|ref|ZP_06862799.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 787

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 18/106 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L + + GQ  A + ++ A++         A LRD   P  + L  GPTGVGKT ++R+L
Sbjct: 464 DLKQVVFGQDAAVKKLSTAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARQL 517

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           A + G    + +++++ E            GYVG +   ++ D VD
Sbjct: 518 ASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 563


>gi|260429034|ref|ZP_05783011.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella
           sp. SE45]
 gi|260419657|gb|EEX12910.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella
           sp. SE45]
          Length = 776

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 463 KDLEKSLKRVVFGQDPAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   ++ +++++ E   V R
Sbjct: 517 VAKQLASTLGVELLRFDMSEYMEKHAVSR 545


>gi|320010065|gb|ADW04915.1| ATPase AAA-2 domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|254474645|ref|ZP_05088031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
 gi|214028888|gb|EEB69723.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
          Length = 773

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT ++++LA
Sbjct: 466 LKRVVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 519

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 DTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570


>gi|297192907|ref|ZP_06910305.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722625|gb|EDY66533.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|195445293|ref|XP_002070262.1| GK11127 [Drosophila willistoni]
 gi|194166347|gb|EDW81248.1| GK11127 [Drosophila willistoni]
          Length = 389

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 143 VQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI V  ++F +  Y+G    +++RDL  +A
Sbjct: 198 FISVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225


>gi|191172189|ref|ZP_03033732.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
 gi|190907499|gb|EDV67095.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|170766096|ref|ZP_02900907.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
 gi|170125242|gb|EDS94173.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|149632154|ref|XP_001506311.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|172063361|ref|YP_001811012.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|171995878|gb|ACB66796.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|145596784|ref|YP_001161081.1| ATPase [Salinispora tropica CNB-440]
 gi|145306121|gb|ABP56703.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440]
          Length = 844

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592


>gi|81429209|ref|YP_396210.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
 gi|78610852|emb|CAI55904.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
          Length = 696

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 278


>gi|330814390|ref|YP_004358629.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487485|gb|AEA81890.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT I+R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 186 IPKGALLIGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 240


>gi|323508048|emb|CBQ67919.1| probable MSP1-intra-mitochondrial sorting protein [Sporisorium
           reilianum]
          Length = 399

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           PK +LL GP G GKT +++ LA+ +GA FI + V+  T
Sbjct: 121 PKGVLLYGPPGTGKTMLAKALAKESGATFINMHVSTLT 158


>gi|323452125|gb|EGB08000.1| hypothetical protein AURANDRAFT_26972 [Aureococcus anophagefferens]
          Length = 159

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            P+ ++L GP G GKT ++R +A  AG PFI    ++F E+ +VG    +I
Sbjct: 53  CPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRI 102


>gi|302670237|ref|YP_003830197.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Butyrivibrio
           proteoclasticus B316]
 gi|302394710|gb|ADL33615.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Butyrivibrio
           proteoclasticus B316]
          Length = 854

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 14/94 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S L + +IGQ+DA +AV+ A+R R R       L+D   P  + L +GPTGVGKT +S+ 
Sbjct: 510 SVLHKRVIGQEDAVKAVSKAIR-RGR-----VGLQDPNRPIGSFLFLGPTGVGKTELSKA 563

Query: 73  LARLAGA---PFIKVEVTKFTEIGYVGRNVEQII 103
           LA          I+V+++++ E    G +V ++I
Sbjct: 564 LAEAMFGDENALIRVDMSEYME----GHSVSKMI 593


>gi|282866331|ref|ZP_06275376.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE]
 gi|282558727|gb|EFB64284.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE]
          Length = 842

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|215408557|emb|CAR31128.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|195499570|ref|XP_002097005.1| GE24735 [Drosophila yakuba]
 gi|194183106|gb|EDW96717.1| GE24735 [Drosophila yakuba]
          Length = 389

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 145 KQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 199

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RDL  +A
Sbjct: 200 RVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225


>gi|170701408|ref|ZP_02892367.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
 gi|170133687|gb|EDT02056.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|158333601|ref|YP_001514773.1| chaperone ClpB [Acaryochloris marina MBIC11017]
 gi|158303842|gb|ABW25459.1| chaperone ClpB [Acaryochloris marina MBIC11017]
          Length = 900

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  AV+ A+R R R     A ++D   P  + + +GPTGVGKT ++R LA
Sbjct: 579 LHERVIGQEDAVEAVSAAIR-RAR-----AGMKDPNRPIGSFMFLGPTGVGKTELARALA 632

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +         I+++++++ E   V R V
Sbjct: 633 QFLFDTEDAIIRIDMSEYMEKHAVSRLV 660


>gi|28210271|ref|NP_781215.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88]
 gi|28202707|gb|AAO35152.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88]
          Length = 576

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + I G ++AK +V      L+N  + +   A      MPK I+L G  G GKT +++ +A
Sbjct: 148 KNIAGNEEAKESVQDVIDFLKNPKKYESYGAR-----MPKGIILYGEPGTGKTLLAKAIA 202

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             AG PF  +  + F ++ YVG    + IR L   A N
Sbjct: 203 GEAGVPFYALSGSDFVQV-YVGVGASR-IRQLFKKARN 238


>gi|83310222|ref|YP_420486.1| ATPase with chaperone activity, ATP-binding subunit
           [Magnetospirillum magneticum AMB-1]
 gi|82945063|dbj|BAE49927.1| ATPase with chaperone activity, ATP-binding subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 764

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+A A++         A LR+   P    L  GPTGVGKT 
Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LA++ G    + +++++ E            GYVG +   ++ D +D
Sbjct: 508 VARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558


>gi|50543570|ref|XP_499951.1| YALI0A10615p [Yarrowia lipolytica]
 gi|49645816|emb|CAG83880.1| YALI0A10615p [Yarrowia lipolytica]
          Length = 800

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT I++  A  AG PF+ V  ++F E+ 
Sbjct: 345 LKNPQKFERLGAKI-----PRGAILSGPPGTGKTLIAKATAGEAGVPFLSVSGSEFVEM- 398

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 399 FVGVGASR-VRDLFSQA 414


>gi|1176560|sp|P46508|YME1_SCHMA RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|453978|emb|CAA82844.1| ATPase (putative) [Schistosoma mansoni]
          Length = 662

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  +  Q+ A L     PK +LLVGP GVGKT +++ ++  A  PF+    + F E+ 
Sbjct: 185 LRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEV- 238

Query: 94  YVGRNVEQIIRDLVDVA 110
            VG    + IR L   A
Sbjct: 239 LVGLGASR-IRQLFTTA 254


>gi|311896812|dbj|BAJ29220.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Kitasatospora setae KM-6054]
          Length = 838

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALIALDMSEFSEKHTVSR 591


>gi|302337451|ref|YP_003802657.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293]
 gi|301634636|gb|ADK80063.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L++ ++GQ++A RAV+ A+R           L DE  P  + + +GPTGVGKT +
Sbjct: 564 QLESTLEKRVVGQKEAIRAVSDAIRRN------KTGLSDEARPLGSFIFIGPTGVGKTEL 617

Query: 70  SRRLA 74
           +R LA
Sbjct: 618 ARTLA 622


>gi|168039463|ref|XP_001772217.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676548|gb|EDQ63030.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 220

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFQLA 248


>gi|145545642|ref|XP_001458505.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426325|emb|CAK91108.1| unnamed protein product [Paramecium tetraurelia]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL GP G GKT +++  A  AG PF  V  + F E+ +VG    + +RDL   A
Sbjct: 438 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 494


>gi|300980089|ref|ZP_07174839.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|300307863|gb|EFJ62383.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|324012133|gb|EGB81352.1| ATP-dependent metalloprotease [Escherichia coli MS 60-1]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|328857483|gb|EGG06599.1| ATPase [Melampsora larici-populina 98AG31]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 337 IPKGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGPSR-VRDLFATA 393


>gi|330470478|ref|YP_004408221.1| ATPase aaa-2 domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328813449|gb|AEB47621.1| atpase aaa-2 domain protein [Verrucosispora maris AB-18-032]
          Length = 846

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592


>gi|320174542|gb|EFW49678.1| Cell division protein FtsH [Shigella dysenteriae CDC 74-1112]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|297171206|gb|ADI22214.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF0200_34B24]
 gi|297171322|gb|ADI22327.1| hypothetical protein [uncultured actinobacterium HF0500_01C15]
          Length = 826

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + I+GQ DA  A++ A+R R R     A L+D   P  + +  GPTGVGKT ++R L
Sbjct: 518 ELHKRIVGQNDAIEAISRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELARAL 571

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A    A     ++V+++++ E   V R
Sbjct: 572 AEFLFADREALVRVDMSEYMEKFSVSR 598


>gi|315634355|ref|ZP_07889642.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
 gi|315476945|gb|EFU67690.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238


>gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
 gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      LRN  +  +L   +     P   LL+GP G GKT +++ +A  
Sbjct: 198 VAGQEGAKQEVEEIVEFLRNPGKYTELGGKI-----PAGALLIGPPGTGKTLLAKAVAGE 252

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 253 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 284


>gi|302535160|ref|ZP_07287502.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
 gi|302444055|gb|EFL15871.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 591


>gi|196011868|ref|XP_002115797.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens]
 gi|190581573|gb|EDV21649.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + QQL A +     P+  +L GP G GKT +++  A  AG PF+ +  ++F E+ 
Sbjct: 316 LKNPNQYQQLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSISGSEFLEM- 369

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 370 FVGVGPAR-VRDL 381


>gi|189010325|ref|ZP_03006283.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401894|ref|ZP_03006511.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403307|ref|ZP_03007035.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404776|ref|ZP_03007576.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208814269|ref|ZP_03255598.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820312|ref|ZP_03260632.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
 gi|189001000|gb|EDU69986.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358414|gb|EDU76833.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361490|gb|EDU79909.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374008|gb|EDU92424.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208735546|gb|EDZ84233.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740435|gb|EDZ88117.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|110598266|ref|ZP_01386541.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340074|gb|EAT58574.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 284


>gi|24375079|ref|NP_719122.1| clpB protein [Shewanella oneidensis MR-1]
 gi|54035853|sp|Q8EBE6|CLPB_SHEON RecName: Full=Chaperone protein ClpB
 gi|24349835|gb|AAN56566.1|AE015794_4 clpB protein [Shewanella oneidensis MR-1]
          Length = 857

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           R    + +  +++++++F E   V R V
Sbjct: 620 RFLFDSESALVRIDMSEFMEKHAVSRLV 647


>gi|299743241|ref|XP_001835627.2| ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405567|gb|EAU86198.2| ATPase [Coprinopsis cinerea okayama7#130]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT +++ LA+ +GA FI +  +  T   Y
Sbjct: 118 PKGVLLFGPPGCGKTMMAKALAKESGATFINIAASVLTNKWY 159


>gi|296392867|ref|YP_003657751.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296180014|gb|ADG96920.1| ATPase AAA-2 domain protein [Segniliparus rotundus DSM 44985]
          Length = 842

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA  AVA A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 515 ELHKRIIGQRDAVAAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568

Query: 74  A 74
           A
Sbjct: 569 A 569


>gi|290998117|ref|XP_002681627.1| predicted protein [Naegleria gruberi]
 gi|284095252|gb|EFC48883.1| predicted protein [Naegleria gruberi]
          Length = 277

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G   AK++V  A+     R  L   LR    PK +LL GP G GKT I + +A  +G+
Sbjct: 7   IAGLAYAKKSVQEAVIWPLMRPDLFTGLRKP--PKGLLLFGPPGTGKTLIGKAIAHESGS 64

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E++++ L  +A
Sbjct: 65  TFFSISASSLTS-KWVGEG-EKLVKTLFSLA 93


>gi|215432571|ref|ZP_03430490.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
           tuberculosis EAS054]
          Length = 534

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 432 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 485

Query: 74  A 74
           A
Sbjct: 486 A 486


>gi|194290075|ref|YP_002005982.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           atpase and peptidase m41 families [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223910|emb|CAQ69919.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Cupriavidus
           taiwanensis LMG 19424]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|68160836|gb|AAY86864.1| lr1227 [Lactobacillus reuteri]
          Length = 551

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL D A
Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283


>gi|15606774|ref|NP_214154.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5]
 gi|54035745|sp|O67588|CLPB_AQUAE RecName: Full=Chaperone protein ClpB
 gi|2984005|gb|AAC07550.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5]
          Length = 1006

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++ Q+ A +AVA A+R R R     A L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 686 ELHKRVVDQEHAVKAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKAL 739

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A L        I++++++F E            GYVG
Sbjct: 740 AELLFGDEDALIRLDMSEFKEEHSVAKLIGAPPGYVG 776


>gi|320202092|gb|EFW76667.1| Cell division protein FtsH [Escherichia coli EC4100B]
          Length = 555

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 65  VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 119

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 120 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 151


>gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
 gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
          Length = 651

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 179 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFDQA 235


>gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 665

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 193 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFDQA 249


>gi|313123085|ref|YP_004033344.1| m41 family endopeptidase ftsh [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279648|gb|ADQ60367.1| M41 family endopeptidase FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 161 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 214

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 215 FVGVGASR-VRDL 226


>gi|306430701|emb|CBJ17097.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430749|emb|CBJ17121.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430751|emb|CBJ17122.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430763|emb|CBJ17128.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430767|emb|CBJ17130.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430769|emb|CBJ17131.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430771|emb|CBJ17132.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|293390042|ref|ZP_06634376.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950576|gb|EFE00695.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEKA 241


>gi|194902777|ref|XP_001980760.1| GG17330 [Drosophila erecta]
 gi|190652463|gb|EDV49718.1| GG17330 [Drosophila erecta]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 145 KQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 199

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RDL  +A
Sbjct: 200 RVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225


>gi|82778492|ref|YP_404841.1| ATP-dependent metalloprotease [Shigella dysenteriae Sd197]
 gi|309785506|ref|ZP_07680137.1| cell division protease ftsH [Shigella dysenteriae 1617]
 gi|81242640|gb|ABB63350.1| HflB [Shigella dysenteriae Sd197]
 gi|308926626|gb|EFP72102.1| cell division protease ftsH [Shigella dysenteriae 1617]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|82545584|ref|YP_409531.1| ATP-dependent metalloprotease [Shigella boydii Sb227]
 gi|81246995|gb|ABB67703.1| HflB [Shigella boydii Sb227]
 gi|320186665|gb|EFW61389.1| Cell division protein FtsH [Shigella flexneri CDC 796-83]
 gi|332090713|gb|EGI95807.1| cell division protease ftsH [Shigella boydii 3594-74]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|83999833|emb|CAH60133.1| putative Clp-family ATP-binding protease [Streptomyces
           tenjimariensis]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 590


>gi|84514770|ref|ZP_01002133.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
 gi|84510929|gb|EAQ07383.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
          Length = 772

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 458 KDLEKSLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 512 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 562


>gi|16131068|ref|NP_417645.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24114467|ref|NP_708977.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 301]
 gi|30064516|ref|NP_838687.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 2457T]
 gi|74313715|ref|YP_312134.1| ATP-dependent metalloprotease [Shigella sonnei Ss046]
 gi|89109941|ref|AP_003721.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. W3110]
 gi|91212599|ref|YP_542585.1| ATP-dependent metalloprotease [Escherichia coli UTI89]
 gi|110643418|ref|YP_671148.1| ATP-dependent metalloprotease [Escherichia coli 536]
 gi|110807044|ref|YP_690564.1| ATP-dependent metalloprotease [Shigella flexneri 5 str. 8401]
 gi|117625472|ref|YP_858795.1| ATP-dependent metalloprotease [Escherichia coli APEC O1]
 gi|170018572|ref|YP_001723526.1| ATP-dependent metalloprotease [Escherichia coli ATCC 8739]
 gi|170082713|ref|YP_001732033.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209920653|ref|YP_002294737.1| ATP-dependent metalloprotease [Escherichia coli SE11]
 gi|215488494|ref|YP_002330925.1| ATP-dependent metalloprotease [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550461|ref|YP_002384252.1| ATP-dependent metalloprotease [Escherichia fergusonii ATCC 35469]
 gi|218555748|ref|YP_002388661.1| ATP-dependent metalloprotease [Escherichia coli IAI1]
 gi|218560248|ref|YP_002393161.1| ATP-dependent metalloprotease [Escherichia coli S88]
 gi|218691468|ref|YP_002399680.1| ATP-dependent metalloprotease [Escherichia coli ED1a]
 gi|218696883|ref|YP_002404550.1| ATP-dependent metalloprotease [Escherichia coli 55989]
 gi|218701947|ref|YP_002409576.1| ATP-dependent metalloprotease [Escherichia coli IAI39]
 gi|218706798|ref|YP_002414317.1| ATP-dependent metalloprotease [Escherichia coli UMN026]
 gi|227887899|ref|ZP_04005704.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238902280|ref|YP_002928076.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|254163120|ref|YP_003046228.1| ATP-dependent metalloprotease [Escherichia coli B str. REL606]
 gi|256018903|ref|ZP_05432768.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|256024247|ref|ZP_05438112.1| ATP-dependent metalloprotease [Escherichia sp. 4_1_40B]
 gi|260845991|ref|YP_003223769.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|260857305|ref|YP_003231196.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|260869929|ref|YP_003236331.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|291284552|ref|YP_003501370.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|293416608|ref|ZP_06659247.1| hflB [Escherichia coli B185]
 gi|297520552|ref|ZP_06938938.1| ATP-dependent metalloprotease [Escherichia coli OP50]
 gi|300817569|ref|ZP_07097785.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300823858|ref|ZP_07103982.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300897943|ref|ZP_07116321.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300904365|ref|ZP_07122217.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300918936|ref|ZP_07135494.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300926081|ref|ZP_07141900.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300929870|ref|ZP_07145315.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300938090|ref|ZP_07152867.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300948829|ref|ZP_07162896.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300955764|ref|ZP_07168108.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300990825|ref|ZP_07179352.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|301022033|ref|ZP_07185976.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|301047978|ref|ZP_07195021.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|301301764|ref|ZP_07207898.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|301326397|ref|ZP_07219753.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301644889|ref|ZP_07244860.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|306816480|ref|ZP_07450612.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307139864|ref|ZP_07499220.1| ATP-dependent metalloprotease [Escherichia coli H736]
 gi|309793755|ref|ZP_07688181.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|312968485|ref|ZP_07782694.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312972548|ref|ZP_07786722.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|331643876|ref|ZP_08345007.1| cell division protease FtsH [Escherichia coli H736]
 gi|331648978|ref|ZP_08350066.1| cell division protease FtsH [Escherichia coli M605]
 gi|331654782|ref|ZP_08355782.1| cell division protease FtsH [Escherichia coli M718]
 gi|331659465|ref|ZP_08360407.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331664790|ref|ZP_08365695.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331670005|ref|ZP_08370850.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331679257|ref|ZP_08379929.1| cell division protease FtsH [Escherichia coli H591]
 gi|331684825|ref|ZP_08385417.1| cell division protease FtsH [Escherichia coli H299]
 gi|77416821|sp|P0AAI3|FTSH_ECOLI RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|77416822|sp|P0AAI4|FTSH_SHIFL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|146028|gb|AAA23813.1| ftsH [Escherichia coli str. K-12 substr. W3110]
 gi|606116|gb|AAA57979.1| CG Site No. 735 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789568|gb|AAC76210.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24053649|gb|AAN44684.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 301]
 gi|30042775|gb|AAP18498.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 2457T]
 gi|73857192|gb|AAZ89899.1| degrades sigma32, integral membrane peptidase, cell division
           protein [Shigella sonnei Ss046]
 gi|85675972|dbj|BAE77222.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K12
           substr. W3110]
 gi|91074173|gb|ABE09054.1| ATP-binding protein [Escherichia coli UTI89]
 gi|110345010|gb|ABG71247.1| cell division protein FtsH [Escherichia coli 536]
 gi|110616592|gb|ABF05259.1| ATP-dependent zinc-metallo protease [Shigella flexneri 5 str. 8401]
 gi|115514596|gb|ABJ02671.1| putative ATP-dependent zinc metalloprotease [Escherichia coli APEC
           O1]
 gi|169753500|gb|ACA76199.1| ATP-dependent metalloprotease FtsH [Escherichia coli ATCC 8739]
 gi|169890548|gb|ACB04255.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209758258|gb|ACI77441.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758264|gb|ACI77444.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209913912|dbj|BAG78986.1| cell division protein [Escherichia coli SE11]
 gi|215266566|emb|CAS11005.1| protease, ATP-dependent zinc-metallo [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353615|emb|CAU99811.1| protease, ATP-dependent zinc-metallo [Escherichia coli 55989]
 gi|218358002|emb|CAQ90648.1| protease, ATP-dependent zinc-metallo [Escherichia fergusonii ATCC
           35469]
 gi|218362516|emb|CAR00140.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI1]
 gi|218367017|emb|CAR04788.1| protease, ATP-dependent zinc-metallo [Escherichia coli S88]
 gi|218371933|emb|CAR19789.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI39]
 gi|218429032|emb|CAR09979.2| protease, ATP-dependent zinc-metallo [Escherichia coli ED1a]
 gi|218433895|emb|CAR14812.1| protease, ATP-dependent zinc-metallo [Escherichia coli UMN026]
 gi|222034895|emb|CAP77638.1| Cell division protease ftsH [Escherichia coli LF82]
 gi|227835295|gb|EEJ45761.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238863291|gb|ACR65289.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|242378721|emb|CAQ33511.1| ATP-dependent zinc metalloprotease FtsH, subunit of HflB, integral
           membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli BL21(DE3)]
 gi|253975021|gb|ACT40692.1| protease, ATP-dependent zinc-metallo [Escherichia coli B str.
           REL606]
 gi|253979177|gb|ACT44847.1| protease, ATP-dependent zinc-metallo [Escherichia coli BL21(DE3)]
 gi|257755954|dbj|BAI27456.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|257761138|dbj|BAI32635.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|257766285|dbj|BAI37780.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|281180220|dbj|BAI56550.1| cell division protein [Escherichia coli SE15]
 gi|281602561|gb|ADA75545.1| Cell division protease ftsH [Shigella flexneri 2002017]
 gi|290764425|gb|ADD58386.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|291431964|gb|EFF04947.1| hflB [Escherichia coli B185]
 gi|300300163|gb|EFJ56548.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|300317359|gb|EFJ67143.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300358335|gb|EFJ74205.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300397748|gb|EFJ81286.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|300403688|gb|EFJ87226.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300407045|gb|EFJ90583.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|300413932|gb|EFJ97242.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300417870|gb|EFK01181.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300451685|gb|EFK15305.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300456911|gb|EFK20404.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300462203|gb|EFK25696.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300523626|gb|EFK44695.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300529867|gb|EFK50929.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300842745|gb|EFK70505.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|300846908|gb|EFK74668.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301076795|gb|EFK91601.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|305850045|gb|EFM50504.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307555272|gb|ADN48047.1| cell division protease FtsH [Escherichia coli ABU 83972]
 gi|307625223|gb|ADN69527.1| ATP-dependent metalloprotease [Escherichia coli UM146]
 gi|308122712|gb|EFO59974.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|309703604|emb|CBJ02944.1| cell division protein [Escherichia coli ETEC H10407]
 gi|310334925|gb|EFQ01130.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|312286703|gb|EFR14614.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312947735|gb|ADR28562.1| ATP-dependent metalloprotease [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315257103|gb|EFU37071.1| ATP-dependent metalloprotease [Escherichia coli MS 85-1]
 gi|315288958|gb|EFU48356.1| ATP-dependent metalloprotease [Escherichia coli MS 110-3]
 gi|315294885|gb|EFU54224.1| ATP-dependent metalloprotease [Escherichia coli MS 153-1]
 gi|315297892|gb|EFU57162.1| ATP-dependent metalloprotease [Escherichia coli MS 16-3]
 gi|315617261|gb|EFU97870.1| cell division protease ftsH [Escherichia coli 3431]
 gi|320194663|gb|EFW69293.1| Cell division protein FtsH [Escherichia coli WV_060327]
 gi|320640249|gb|EFX09821.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. G5101]
 gi|320645546|gb|EFX14555.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str.
           493-89]
 gi|320650856|gb|EFX19313.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str. H
           2687]
 gi|320656237|gb|EFX24149.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661927|gb|EFX29335.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666762|gb|EFX33741.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154391|gb|EFZ40592.1| cell division protease ftsH [Escherichia coli EPECa14]
 gi|323162870|gb|EFZ48705.1| cell division protease ftsH [Escherichia coli E128010]
 gi|323165138|gb|EFZ50928.1| cell division protease ftsH [Shigella sonnei 53G]
 gi|323173562|gb|EFZ59191.1| cell division protease ftsH [Escherichia coli LT-68]
 gi|323178646|gb|EFZ64222.1| cell division protease ftsH [Escherichia coli 1180]
 gi|323183132|gb|EFZ68530.1| cell division protease ftsH [Escherichia coli 1357]
 gi|323189201|gb|EFZ74485.1| cell division protease ftsH [Escherichia coli RN587/1]
 gi|323936128|gb|EGB32422.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1520]
 gi|323941722|gb|EGB37901.1| ATP-dependent metallopeptidase HflB [Escherichia coli E482]
 gi|323946968|gb|EGB42984.1| ATP-dependent metallopeptidase HflB [Escherichia coli H120]
 gi|323951303|gb|EGB47178.1| ATP-dependent metallopeptidase HflB [Escherichia coli H252]
 gi|323957675|gb|EGB53389.1| ATP-dependent metallopeptidase HflB [Escherichia coli H263]
 gi|323961167|gb|EGB56781.1| ATP-dependent metallopeptidase HflB [Escherichia coli H489]
 gi|323966358|gb|EGB61792.1| ATP-dependent metallopeptidase HflB [Escherichia coli M863]
 gi|323970259|gb|EGB65530.1| ATP-dependent metallopeptidase HflB [Escherichia coli TA007]
 gi|323979105|gb|EGB74183.1| ATP-dependent metallopeptidase HflB [Escherichia coli TW10509]
 gi|324008749|gb|EGB77968.1| ATP-dependent metalloprotease [Escherichia coli MS 57-2]
 gi|324018297|gb|EGB87516.1| ATP-dependent metalloprotease [Escherichia coli MS 117-3]
 gi|324115218|gb|EGC09182.1| ATP-dependent metallopeptidase HflB [Escherichia fergusonii B253]
 gi|324119543|gb|EGC13425.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1167]
 gi|325498759|gb|EGC96618.1| ATP-dependent metalloprotease [Escherichia fergusonii ECD227]
 gi|327251269|gb|EGE62958.1| cell division protease ftsH [Escherichia coli STEC_7v]
 gi|330909232|gb|EGH37746.1| cell division protein FtsH [Escherichia coli AA86]
 gi|331037347|gb|EGI09571.1| cell division protease FtsH [Escherichia coli H736]
 gi|331042725|gb|EGI14867.1| cell division protease FtsH [Escherichia coli M605]
 gi|331048164|gb|EGI20241.1| cell division protease FtsH [Escherichia coli M718]
 gi|331054047|gb|EGI26076.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331058038|gb|EGI30020.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331062918|gb|EGI34832.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331073322|gb|EGI44645.1| cell division protease FtsH [Escherichia coli H591]
 gi|331078440|gb|EGI49646.1| cell division protease FtsH [Escherichia coli H299]
 gi|332345134|gb|AEE58468.1| cell division protease FtsH [Escherichia coli UMNK88]
 gi|332752337|gb|EGJ82727.1| cell division protease ftsH [Shigella flexneri 4343-70]
 gi|332752863|gb|EGJ83248.1| cell division protease ftsH [Shigella flexneri K-671]
 gi|332754442|gb|EGJ84808.1| cell division protease ftsH [Shigella flexneri 2747-71]
 gi|332765174|gb|EGJ95401.1| ftsH HflB [Shigella flexneri 2930-71]
 gi|332998820|gb|EGK18416.1| cell division protease ftsH [Shigella flexneri VA-6]
 gi|332999256|gb|EGK18842.1| cell division protease ftsH [Shigella flexneri K-272]
 gi|333000055|gb|EGK19638.1| cell division protease ftsH [Shigella flexneri K-218]
 gi|333014604|gb|EGK33951.1| cell division protease ftsH [Shigella flexneri K-304]
 gi|333014979|gb|EGK34323.1| cell division protease ftsH [Shigella flexneri K-227]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|332535442|ref|ZP_08411227.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035125|gb|EGI71638.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 725

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +E +  LDR     + GQ  +  A+  A+R    R  L ++   E    + L  GPTGVG
Sbjct: 448 KETLKNLDRNLKMLVFGQDQSIDALTSAIR--LSRSGLSSE---EKPVGSFLFAGPTGVG 502

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           KT ++++LA+  G  FI+ +++++ E   + R
Sbjct: 503 KTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534


>gi|307327020|ref|ZP_07606210.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887318|gb|EFN18314.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|184154697|ref|YP_001843037.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227514337|ref|ZP_03944386.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|183226041|dbj|BAG26557.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227087309|gb|EEI22621.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|299782819|gb|ADJ40817.1| M41 family endopeptidase FtsH [Lactobacillus fermentum CECT 5716]
          Length = 722

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 281


>gi|182437911|ref|YP_001825630.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466427|dbj|BAG20947.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 842

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|152986636|ref|YP_001350793.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
 gi|296391578|ref|ZP_06881053.1| cell division protein FtsH [Pseudomonas aeruginosa PAb1]
 gi|150961794|gb|ABR83819.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|124514649|gb|EAY56161.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
           rubarum]
 gi|206602544|gb|EDZ39025.1| Putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
           sp. Group II '5-way CG']
          Length = 813

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 10/82 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL R I+GQ++A  AVA A+R R R     A ++ E  P  + + +GPTGVGKT ++R 
Sbjct: 504 GELHRRIVGQEEALSAVARAIR-RSR-----AGIKGEKRPIGSFIFLGPTGVGKTELART 557

Query: 73  LAR-LAG--APFIKVEVTKFTE 91
           LA  L G     I+V+++++ E
Sbjct: 558 LAETLFGDEDALIRVDMSEYME 579


>gi|73541858|ref|YP_296378.1| peptidase M41, FtsH [Ralstonia eutropha JMP134]
 gi|72119271|gb|AAZ61534.1| Peptidase M41, FtsH [Ralstonia eutropha JMP134]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|24581396|ref|NP_608763.2| CG3326 [Drosophila melanogaster]
 gi|75027335|sp|Q9VQN8|FIGL1_DROME RecName: Full=Fidgetin-like protein 1
 gi|22945315|gb|AAF51127.2| CG3326 [Drosophila melanogaster]
          Length = 523

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
            F  +  +  T   +VG + E++++ L  VA             + A I  +E  +D+L+
Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVAA----------AHQPAIIFIDE--VDSLL 355

Query: 140 GKTATSNTREVFRKKLR-----DGEISDKEIDIEV 169
            K + +      R K       DG  S++EI + V
Sbjct: 356 SKRSANENESTLRLKNEFLIHLDGAASNEEIRVLV 390


>gi|145218956|ref|YP_001129665.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205120|gb|ABP36163.1| membrane protease FtsH catalytic subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 232 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 288


>gi|94311126|ref|YP_584336.1| ATP-dependent metalloprotease FtsH [Cupriavidus metallidurans CH34]
 gi|122987908|sp|Q1LLA9|FTSH_RALME RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|93354978|gb|ABF09067.1| protease, ATP-dependent zinc-metallo [Cupriavidus metallidurans
           CH34]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 202 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 258


>gi|300124005|emb|CBK25276.2| unnamed protein product [Blastocystis hominis]
          Length = 388

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I++ LA    A FIK   +   E  YVG +  +++R+L + A
Sbjct: 163 PKGVLLYGPPGTGKTLIAKALASSIKATFIKTVASSLIE-KYVGES-SRVVRELFNYA 218


>gi|317152967|ref|YP_004121015.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943218|gb|ADU62269.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 682

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 188 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 240


>gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +L+VGP G GKT ++R +A  A  PF+ V  + F E+ +VG    + +RDL
Sbjct: 221 PRGVLMVGPPGTGKTLLARAVAGEAEVPFLSVTGSSFVEM-FVGVGASR-VRDL 272


>gi|260663745|ref|ZP_05864633.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
 gi|260551796|gb|EEX24912.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
          Length = 698

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|239942194|ref|ZP_04694131.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           15998]
 gi|239988660|ref|ZP_04709324.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           11379]
 gi|291445649|ref|ZP_06585039.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
 gi|291348596|gb|EFE75500.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
          Length = 842

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|323340114|ref|ZP_08080379.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
 gi|323092491|gb|EFZ35098.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
          Length = 719

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 233 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 289


>gi|145495643|ref|XP_001433814.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400934|emb|CAK66417.1| unnamed protein product [Paramecium tetraurelia]
          Length = 699

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL GP G GKT +++  A  AG PF  V  + F E+ +VG    + +RDL   A
Sbjct: 372 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 428


>gi|22255857|gb|AAM94782.1| CalR4 [Micromonospora echinospora]
          Length = 797

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 472 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 525

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 526 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 554


>gi|3834449|gb|AAC70950.1| ATP-dependent Clp protease ATP-binding subunit Clpc [Streptomyces
           coelicolor A3(2)]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 100 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 153

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 154 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 196


>gi|17546245|ref|NP_519647.1| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum
           GMI1000]
 gi|17428542|emb|CAD15228.1| probable atp-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|83747762|ref|ZP_00944796.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|207723996|ref|YP_002254394.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|207742906|ref|YP_002259298.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|300703814|ref|YP_003745416.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           ATPase and peptidase m41 families [Ralstonia
           solanacearum CFBP2957]
 gi|83725534|gb|EAP72678.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|206589204|emb|CAQ36166.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|206594301|emb|CAQ61228.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|299071477|emb|CBJ42799.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CFBP2957]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|71003982|ref|XP_756657.1| hypothetical protein UM00510.1 [Ustilago maydis 521]
 gi|46095729|gb|EAK80962.1| hypothetical protein UM00510.1 [Ustilago maydis 521]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           PK +LL GP G GKT +++ LA+ +GA FI + V+  T
Sbjct: 121 PKGVLLYGPPGTGKTMLAKALAKESGATFINMHVSTLT 158


>gi|331006072|ref|ZP_08329408.1| ClpB protein [gamma proteobacterium IMCC1989]
 gi|330420109|gb|EGG94439.1| ClpB protein [gamma proteobacterium IMCC1989]
          Length = 887

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL R +IGQ+ A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 TELHRRVIGQEQAIVAVSNAVR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKT 617

Query: 73  LAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99
           LA  L  +P   +++++++F E   V R V
Sbjct: 618 LAEFLFDSPDAMVRLDMSEFMEKHAVARLV 647


>gi|320181453|gb|EFW56371.1| Cell division protein FtsH [Shigella boydii ATCC 9905]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|312383446|gb|EFR28534.1| hypothetical protein AND_03433 [Anopheles darlingi]
          Length = 604

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 9/81 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK+ V      L++  R Q+L A +     PK  LL+GP G GKT +++ +A  
Sbjct: 134 VAGLQEAKQEVMEFVDYLKSPGRYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 188

Query: 77  AGAPFIKVEVTKFTE-IGYVG 96
           A  PF+ +  ++F E IG +G
Sbjct: 189 AQVPFLSMNGSEFIEMIGGLG 209


>gi|297159363|gb|ADI09075.1| putative ATP-dependent Clp protease [Streptomyces bingchenggensis
           BCW-1]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|293449512|ref|ZP_06663933.1| hflB [Escherichia coli B088]
 gi|291322602|gb|EFE62031.1| hflB [Escherichia coli B088]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|254485980|ref|ZP_05099185.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter
           sp. GAI101]
 gi|214042849|gb|EEB83487.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter
           sp. GAI101]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564


>gi|206563423|ref|YP_002234186.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
 gi|198039463|emb|CAR55430.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|241663316|ref|YP_002981676.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|309782469|ref|ZP_07677193.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|240865343|gb|ACS63004.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|308918806|gb|EFP64479.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|149909597|ref|ZP_01898250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp.
           PE36]
 gi|149807301|gb|EDM67254.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp.
           PE36]
          Length = 757

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 22/114 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           R+++  L+R     + GQ  A   +  A+R    R  L A    E  P  + L  GPTGV
Sbjct: 449 RDVLKNLERNLKMVVFGQDPAIEVLTDAIR--LSRSGLGA----ETKPIGSFLFAGPTGV 502

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           GKT +++RLA++ G   I+ +++++ E            GYVG +   ++ D V
Sbjct: 503 GKTEVTQRLAKIMGVELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAV 556


>gi|52841054|ref|YP_094853.1| ATP binding protease component ClpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628165|gb|AAU26906.1| ATP binding protease component ClpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 757

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A+A A+   R+  R  Q P            L  GPTGVGK
Sbjct: 455 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 506

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 507 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 537


>gi|71891886|ref|YP_277616.1| hypothetical protein BPEN_101 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795992|gb|AAZ40743.1| HflB [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 170 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 223

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 224 FVGVGASR-VRDMFEQA 239


>gi|52219134|ref|NP_001004640.1| ATPase family AAA domain-containing protein 1-A isoform 1 [Danio
           rerio]
 gi|85701296|sp|Q7ZZ25|ATD1A_DANRE RecName: Full=ATPase family AAA domain-containing protein 1-A
 gi|51858828|gb|AAH81379.1| ATPase family, AAA domain containing 1a [Danio rerio]
 gi|182889226|gb|AAI64811.1| Atad1a protein [Danio rerio]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ +G  FI ++ +  T+  Y
Sbjct: 129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWY 170


>gi|15599945|ref|NP_253439.1| cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|107103848|ref|ZP_01367766.1| hypothetical protein PaerPA_01004919 [Pseudomonas aeruginosa PACS2]
 gi|116052898|ref|YP_793215.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893846|ref|YP_002442715.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|254238513|ref|ZP_04931836.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|254244347|ref|ZP_04937669.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|313109732|ref|ZP_07795672.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
 gi|9951013|gb|AAG08137.1|AE004888_12 cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|115588119|gb|ABJ14134.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170444|gb|EAZ55955.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|126197725|gb|EAZ61788.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|218774074|emb|CAW29890.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|310882174|gb|EFQ40768.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|332086092|gb|EGI91254.1| cell division protease ftsH [Shigella boydii 5216-82]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|306430689|emb|CBJ17091.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430699|emb|CBJ17096.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|299066493|emb|CBJ37683.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CMR15]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|294013426|ref|YP_003546886.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium
           japonicum UT26S]
 gi|292676756|dbj|BAI98274.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium
           japonicum UT26S]
          Length = 861

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 565 AELGKRVIGQAEAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 618

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA       +  +++++++F E   V R
Sbjct: 619 LAGFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|292627733|ref|XP_002666729.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Danio rerio]
          Length = 721

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 319 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 368


>gi|262340850|ref|YP_003283705.1| chaperone ClpB [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272187|gb|ACY40095.1| chaperone ClpB [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 879

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ DA ++VA A+R R R     A L+DE  P  + L +G TGVGKT +++ L
Sbjct: 567 ELHRRVIGQNDAIQSVADAIR-RSR-----AGLQDEKRPIGSFLFMGSTGVGKTELAKTL 620

Query: 74  A 74
           A
Sbjct: 621 A 621


>gi|282599428|ref|YP_003358318.1| hypothetical protein PP-LUZ7_gp036 [Pseudomonas phage LUZ7]
 gi|259048527|emb|CAZ66177.1| hypothetical protein [Pseudomonas phage LUZ7]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 246 IVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYG------SINTDHIL 297
           +VF DEFDK++   + N      S  GVQ + L ++E S ++  YG       +N   +L
Sbjct: 89  VVFADEFDKLLISGNSNSDLAHESTAGVQNEFLKMLE-SDITKVYGDYGKYQEVNVGKVL 147

Query: 298 FIASGAFHVS--------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           FI +GAF+          R   +  E  GR P+  HL+     D   +L    S L+  Y
Sbjct: 148 FIFAGAFNGVDMNNLDDLRSVGVKNEFLGRVPLHFHLEKPTLEDLLGLL--NRSALMEGY 205

Query: 350 KELMKT 355
            EL  +
Sbjct: 206 LELFSS 211


>gi|224541457|ref|ZP_03681996.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525615|gb|EEF94720.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 203 IPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISGSEFVEM-FVG 246


>gi|125528347|gb|EAY76461.1| hypothetical protein OsI_04395 [Oryza sativa Indica Group]
          Length = 802

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 339 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 392

Query: 94  YVG 96
           +VG
Sbjct: 393 FVG 395


>gi|221134248|ref|ZP_03560553.1| ATP-dependent metalloprotease FtsH [Glaciecola sp. HTCC2999]
          Length = 645

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|54293795|ref|YP_126210.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Lens]
 gi|53753627|emb|CAH15085.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Lens]
          Length = 755

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A+A A+   R+  R  Q P            L  GPTGVGK
Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535


>gi|226946313|ref|YP_002801386.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
 gi|226721240|gb|ACO80411.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|327274727|ref|XP_003222128.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Anolis carolinensis]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370


>gi|302338771|ref|YP_003803977.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
 gi|301635956|gb|ADK81383.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ILLVGP G GKT ++R +A  AG  F ++    F E+ +VG    + +RDL
Sbjct: 228 IPKGILLVGPPGTGKTLLARAVAGEAGVVFFRMSGADFVEM-FVGVGAAR-VRDL 280


>gi|300123320|emb|CBK24593.2| unnamed protein product [Blastocystis hominis]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G   AK+ V  A+    +R  L   LR   +P+ +LL GP G GKT + + +A   G 
Sbjct: 70  IAGLAHAKQCVMEAVIWPMQRPDLFTGLR--AVPRGLLLFGPPGTGKTLLGKAIAHGGGC 127

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   ++G   E+++R L  VA
Sbjct: 128 TFFSISASSLTS-KWMGEG-EKMVRALFGVA 156


>gi|317131986|ref|YP_004091300.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469965|gb|ADU26569.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 754

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 9/85 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL-A 74
           L + IIGQ +A  AV++A+R R R Q  P        P + + VGPTGVGKT + + L A
Sbjct: 461 LKKKIIGQDEAVEAVSLAIR-RSRVQISP-----RRRPASFIFVGPTGVGKTELVKVLSA 514

Query: 75  RLAGAP--FIKVEVTKFTEIGYVGR 97
            L   P   I++++++F E   V R
Sbjct: 515 ELFDQPDSLIRLDMSEFMEKHSVSR 539


>gi|148360535|ref|YP_001251742.1| ATP binding protease component ClpA [Legionella pneumophila str.
           Corby]
 gi|296106399|ref|YP_003618099.1| ATP binding protease component [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282308|gb|ABQ56396.1| ATP binding protease component ClpA [Legionella pneumophila str.
           Corby]
 gi|295648300|gb|ADG24147.1| ATP binding protease component [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609612|emb|CBW99114.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila 130b]
          Length = 755

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A+A A+   R+  R  Q P            L  GPTGVGK
Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535


>gi|187929108|ref|YP_001899595.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|187725998|gb|ACD27163.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|115464291|ref|NP_001055745.1| Os05g0458400 [Oryza sativa Japonica Group]
 gi|122169030|sp|Q0DHL4|FTSH8_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 8,
           mitochondrial; Short=OsFTSH8; Flags: Precursor
 gi|113579296|dbj|BAF17659.1| Os05g0458400 [Oryza sativa Japonica Group]
          Length = 822

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 354 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 407

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 408 FVGVGPSRVRNLFQEARQCAPSIIFI 433


>gi|121593879|ref|YP_985775.1| FtsH-2 peptidase [Acidovorax sp. JS42]
 gi|120605959|gb|ABM41699.1| membrane protease FtsH catalytic subunit [Acidovorax sp. JS42]
          Length = 635

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF+ +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFLSLSGSEFVEM-FVGVGAAR-VRDLFEQA 262


>gi|52353449|gb|AAU44017.1| putative AAA-metalloprotease FtsH (fragment) [Oryza sativa Japonica
           Group]
          Length = 475

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 7   LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 60

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 61  FVGVGPSRVRNLFQEARQCAPSIIFI 86


>gi|115440989|ref|NP_001044774.1| Os01g0842600 [Oryza sativa Japonica Group]
 gi|75330839|sp|Q8S2A7|FTSH3_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 3,
           mitochondrial; Short=OsFTSH3; Flags: Precursor
 gi|19571026|dbj|BAB86453.1| putative AAA-metalloprotease FtsH [Oryza sativa Japonica Group]
 gi|113534305|dbj|BAF06688.1| Os01g0842600 [Oryza sativa Japonica Group]
 gi|125572602|gb|EAZ14117.1| hypothetical protein OsJ_04041 [Oryza sativa Japonica Group]
 gi|215712383|dbj|BAG94510.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 339 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 392

Query: 94  YVG 96
           +VG
Sbjct: 393 FVG 395


>gi|289549041|ref|YP_003474029.1| ATPase AAA [Thermocrinis albus DSM 14484]
 gi|289182658|gb|ADC89902.1| ATPase AAA-2 domain protein [Thermocrinis albus DSM 14484]
          Length = 984

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 21/94 (22%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           R +I Q+ A RAVA A+R R R     A L+D   P  + L +GPTGVGKT +S+ LA L
Sbjct: 687 RRVIDQEHAVRAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKALAEL 740

Query: 77  AGA---PFIKVEVTKFTE-----------IGYVG 96
                   I++++++F E            GYVG
Sbjct: 741 LFGDEDALIRLDMSEFKEEHSIAKLIGAPPGYVG 774


>gi|239980295|ref|ZP_04702819.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291452160|ref|ZP_06591550.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291355109|gb|EFE82011.1| ATP-dependent Clp protease [Streptomyces albus J1074]
          Length = 840

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSRAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA  L G     I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKALAEFLFGDEEALISLDMSEFSEKHTVSR 590


>gi|15803718|ref|NP_289752.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 EDL933]
 gi|15833311|ref|NP_312084.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. Sakai]
 gi|195938397|ref|ZP_03083779.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           EC4024]
 gi|209399479|ref|YP_002272648.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327622|ref|ZP_03443705.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795127|ref|YP_003079964.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228189|ref|ZP_05942470.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255045|ref|ZP_05947578.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|20138203|sp|Q8X9L0|FTSH_ECO57 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12517790|gb|AAG58312.1|AE005546_6 degrades sigma32, integral membrane peptidase, cell division
           protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363530|dbj|BAB37480.1| cell division protein HflB/FtsH protease [Escherichia coli O157:H7
           str. Sakai]
 gi|209160879|gb|ACI38312.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209758260|gb|ACI77442.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758262|gb|ACI77443.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758266|gb|ACI77445.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|217319989|gb|EEC28414.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594527|gb|ACT73888.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. TW14359]
 gi|320189531|gb|EFW64190.1| Cell division protein FtsH [Escherichia coli O157:H7 str. EC1212]
 gi|326337878|gb|EGD61712.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1125]
 gi|326347448|gb|EGD71173.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1044]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|114320603|ref|YP_742286.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226997|gb|ABI56796.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 756

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT +SRRLA L G   I+ +++++ E   V R
Sbjct: 494 SFLFSGPTGVGKTEVSRRLAELMGVKLIRFDMSEYMERHTVSR 536


>gi|120556262|ref|YP_960613.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326111|gb|ABM20426.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|300691219|ref|YP_003752214.1| cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
 gi|299078279|emb|CBJ50927.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242


>gi|225573316|ref|ZP_03782071.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039328|gb|EEG49574.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   V   L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 239 AHVPFYSLSGSDFVEM-FVGVGASR-VRDLFEEA 270


>gi|194855425|ref|XP_001968542.1| GG24448 [Drosophila erecta]
 gi|190660409|gb|EDV57601.1| GG24448 [Drosophila erecta]
          Length = 527

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 256 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 313

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG + E++++ L  VA
Sbjct: 314 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 342


>gi|145507119|ref|XP_001439517.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406707|emb|CAK72120.1| unnamed protein product [Paramecium tetraurelia]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL GP G GKT +++  A  AG PF  V  + F E+ +VG    + +RDL   A
Sbjct: 373 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 429


>gi|194332970|ref|YP_002014830.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
 gi|194310788|gb|ACF45183.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
          Length = 699

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 281


>gi|23016165|ref|ZP_00055924.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 765

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R +  +L   + GQ  A  A+A A++         A LR+   P    L  GPTGVGKT 
Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++R+LA++ G    + +++++ E            GYVG +   ++ D +D
Sbjct: 508 VARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558


>gi|296282903|ref|ZP_06860901.1| ATP-dependent Zn protease [Citromicrobium bathyomarinum JL354]
          Length = 659

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 208 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 264


>gi|239982566|ref|ZP_04705090.1| cell division protein FtsH-like protein [Streptomyces albus J1074]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 237 MPRGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 296

Query: 110 AINIV 114
           A +I+
Sbjct: 297 APSII 301


>gi|218196923|gb|EEC79350.1| hypothetical protein OsI_20217 [Oryza sativa Indica Group]
          Length = 829

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 361 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 414

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 415 FVGVGPSRVRNLFQEARQCAPSIIFI 440


>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
 gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT I+R +A  A  PFI+   ++F E+ +VG    + IR+L   A
Sbjct: 282 LPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEM-FVGVGARR-IRELFQAA 338


>gi|114704885|ref|ZP_01437793.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506]
 gi|114539670|gb|EAU42790.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506]
          Length = 832

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A  A+A A++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 464 TQLKRVVYGQDQAIEALASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVAKQ 517

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 518 LASTLGVEILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570


>gi|85858020|ref|YP_460222.1| ATPase Clp protease ATP binding subunit [Syntrophus aciditrophicus
           SB]
 gi|85721111|gb|ABC76054.1| ATPase clp protease ATP binding subunit [Syntrophus aciditrophicus
           SB]
          Length = 768

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ +EL   I GQ  A   +  +++ R R     A  R+   P  + LLVGPTGVGKT 
Sbjct: 457 RDLETELKSTIFGQDQAIEQLVESIK-RSR-----AGFREPDKPIGSFLLVGPTGVGKTE 510

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA   G P  + +++++ E   V +
Sbjct: 511 LARQLALSLGIPLHRYDMSEYQEKHTVAK 539


>gi|254248360|ref|ZP_04941680.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184]
 gi|124874861|gb|EAY64851.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184]
          Length = 659

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|326679769|ref|XP_003201374.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Danio rerio]
          Length = 704

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 302 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 351


>gi|300812101|ref|ZP_07092549.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496940|gb|EFK32014.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 737

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 261

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 262 FVGVGASR-VRDL 273


>gi|291454408|ref|ZP_06593798.1| cell division protein [Streptomyces albus J1074]
 gi|291357357|gb|EFE84259.1| cell division protein [Streptomyces albus J1074]
          Length = 664

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 255 MPRGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 314

Query: 110 AINIV 114
           A +I+
Sbjct: 315 APSII 319


>gi|288941086|ref|YP_003443326.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180]
 gi|288896458|gb|ADC62294.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180]
          Length = 865

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SE+++ ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 SEIEQRVVGQNEAVRAVSDAIR-RSR-----AGLSDPGRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 618 LAAFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|215408563|emb|CAR31131.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|215408547|emb|CAR31123.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|171690880|ref|XP_001910365.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945388|emb|CAP71500.1| unnamed protein product [Podospora anserina S mat+]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A  +GA FI + ++  TE  Y   N  +++R +  +A
Sbjct: 150 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 205


>gi|150866631|ref|XP_001386295.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149387887|gb|ABN68266.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 788

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 31/157 (19%)

Query: 42  QLPADLRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--G 93
           QLP +  D         PK +LL GP G  KT  ++ LA  +G  F+ V   K  EI   
Sbjct: 539 QLPLEAADSFKALGVSAPKGVLLYGPPGCSKTLTAKALATESGLNFLAV---KGPEIFNK 595

Query: 94  YVG---RNVEQIIRDLVDVAINIVRESRRDEV---REQASINAEERILDALVGK------ 141
           YVG   R + +I R     A +I+     D +   RE AS +A + +L +L+ +      
Sbjct: 596 YVGESERAIREIFRKARAAAPSIIFFDEIDAISGDRESASTSASQHVLTSLLNEIDGVEE 655

Query: 142 -------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
                   AT+   E+    LR G + D+ I +   D
Sbjct: 656 LKGVVIVAATNKPTEIDPALLRPGRL-DRHIYVAPPD 691


>gi|158522492|ref|YP_001530362.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus
           oleovorans Hxd3]
 gi|158511318|gb|ABW68285.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus
           oleovorans Hxd3]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + + GQ +A   +  A++ R R     A L     P  + L  GPTGVGKT I+R++
Sbjct: 453 ELKQVVFGQDEAIAFLTTAIK-RSR-----AGLGKPEKPIGSFLFTGPTGVGKTEIARQM 506

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A + G  FI+ +++++ E   V R
Sbjct: 507 AAILGVAFIRFDMSEYMEKHAVAR 530


>gi|115642732|ref|XP_001184600.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
 gi|115661295|ref|XP_001196555.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 89  PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 144


>gi|320450651|ref|YP_004202747.1| ATPase [Thermus scotoductus SA-01]
 gi|320150820|gb|ADW22198.1| ATPase AAA-2 [Thermus scotoductus SA-01]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 49/181 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L R +IGQ  A  AV   L+ +       A L  +  P +++L GPTG GKT +++ LA 
Sbjct: 165 LKRRVIGQDHAVEAVVRGLKRK------AAGLSRKEKPFSVMLAGPTGTGKTELAKALAD 218

Query: 76  LAGAPFIKVEVTKF-----------TEIGYV-----GRNVEQIIRD-------------- 105
             G P I+ ++ ++           +  GYV     GR  E + R               
Sbjct: 219 ALGRPLIRYDMNQYGQDHTVAALVGSPPGYVGSDRPGRLYEDLARHPKGVFLFDEMEKAH 278

Query: 106 --LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN--TREVFRKKLRDGEIS 161
             ++D  + ++ E R  E+ +    +A E IL        T+N   RE F  +   GE+ 
Sbjct: 279 PAVLDPLLQLLDEGRFQELSKGLVASAPECIL------LFTTNLLAREAFEGR---GEMP 329

Query: 162 D 162
           D
Sbjct: 330 D 330


>gi|294085870|ref|YP_003552630.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665445|gb|ADE40546.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 185 IPKGVLLVGPPGTGKTLLAKAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239


>gi|224044755|ref|XP_002188216.1| PREDICTED: YME1-like 1 isoform 2 [Taeniopygia guttata]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370


>gi|209694184|ref|YP_002262112.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238]
 gi|208008135|emb|CAQ78277.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238]
          Length = 660

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P  +LLVGP G GKT I++ +A  A  PF  +  + F E+ 
Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|158288670|ref|XP_310523.4| AGAP000560-PA [Anopheles gambiae str. PEST]
 gi|157018680|gb|EAA06300.4| AGAP000560-PA [Anopheles gambiae str. PEST]
          Length = 727

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G Q+AK+ V      L++  R Q+L A +     PK  LL+GP G GKT +++ +A
Sbjct: 253 RDVAGLQEAKQEVMEFVDYLKSPGRYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVA 307

Query: 75  RLAGAPFIKVEVTKFTE-IGYVG 96
             A  PF+ +  ++F E IG +G
Sbjct: 308 TEAQVPFLSMNGSEFIEMIGGLG 330


>gi|152002560|dbj|BAF73584.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-W]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT + + LA     PF  V  ++F E+ YVG    + IRDL   A
Sbjct: 212 IPKGVLLEGPPGTGKTLLVKALANEVKIPFYAVSGSEFVEV-YVGVGASR-IRDLFQKA 268


>gi|107026275|ref|YP_623786.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU
           1054]
 gi|116692537|ref|YP_838070.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia
           HI2424]
 gi|105895649|gb|ABF78813.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           AU 1054]
 gi|116650537|gb|ABK11177.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           HI2424]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|54296839|ref|YP_123208.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Paris]
 gi|53750624|emb|CAH12031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Paris]
          Length = 755

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A+A A+   R+  R  Q P            L  GPTGVGK
Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535


>gi|326921621|ref|XP_003207055.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like
           [Meleagris gallopavo]
          Length = 722

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 320 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 369


>gi|306430697|emb|CBJ17095.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430703|emb|CBJ17098.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430705|emb|CBJ17099.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430707|emb|CBJ17100.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430709|emb|CBJ17101.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430719|emb|CBJ17106.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|306430657|emb|CBJ17075.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430659|emb|CBJ17076.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430665|emb|CBJ17079.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430667|emb|CBJ17080.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430669|emb|CBJ17081.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430747|emb|CBJ17120.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430755|emb|CBJ17124.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|256081179|ref|XP_002576850.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni]
 gi|238662136|emb|CAZ33087.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           LRN  +  Q+ A L     PK +LLVGP GVGKT +++ ++  A  PF+    + F E+
Sbjct: 185 LRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEV 238


>gi|215408543|emb|CAR31121.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|149202407|ref|ZP_01879380.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius
           sp. TM1035]
 gi|149144505|gb|EDM32536.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius
           sp. TM1035]
          Length = 763

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 449 KDLEGTLKRVVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 503 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 553


>gi|71895721|ref|NP_001026683.1| ATP-dependent metalloprotease YME1L1 [Gallus gallus]
 gi|53135987|emb|CAG32475.1| hypothetical protein RCJMB04_26f23 [Gallus gallus]
          Length = 722

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 320 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 369


>gi|55741940|ref|NP_001007113.1| ATPase family AAA domain-containing protein 1-A isoform 2 [Danio
           rerio]
 gi|27802754|emb|CAD60864.1| novel protein with ATPase domain [Danio rerio]
          Length = 372

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ +G  FI ++ +  T+  Y
Sbjct: 129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWY 170


>gi|319936956|ref|ZP_08011366.1| cell division protein ftsH [Coprobacillus sp. 29_1]
 gi|319807892|gb|EFW04471.1| cell division protein ftsH [Coprobacillus sp. 29_1]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P+ +LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 203 IPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISGSEFVEM-FVG 246


>gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
 gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
          Length = 1104

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  AG PF     ++F E+ YVG
Sbjct: 481 LPKGVLLTGPPGTGKTLLAKAVAGEAGVPFFYRAGSEFEEL-YVG 524


>gi|281205904|gb|EFA80093.1| peptidase M41 [Polysphondylium pallidum PN500]
          Length = 853

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  +LVGP G GKT I++  A  +G PF  +  + F E+ 
Sbjct: 371 LKNPQKYKRLGAKI-----PKGAILVGPPGTGKTLIAKATAGESGVPFFTISGSDFIEM- 424

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 425 FVGVGPSR-VRDLFKEA 440


>gi|260577287|ref|ZP_05845260.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2]
 gi|259020468|gb|EEW23791.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2]
          Length = 870

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+ A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGKRVIGQRRALTAVANAVR-RAR-----AGLNDEKRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       A  +++++++F E   V R
Sbjct: 616 AEYLFDDDAAMVRIDMSEFMEKHAVSR 642


>gi|217968790|ref|YP_002354024.1| ATPase AAA [Thauera sp. MZ1T]
 gi|217506117|gb|ACK53128.1| AAA ATPase central domain protein [Thauera sp. MZ1T]
          Length = 781

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 33  ALRNRWRRQQLPADLRDELM-------------PKNILLVGPTGVGKTAISRRLARLAGA 79
           AL  RW    LPAD+R+ L+             P+ ILL GP G GK+ +++       A
Sbjct: 266 ALAARWADIALPADVRETLLAGLVHFAYGDAAAPRGILLKGPPGTGKSLVAQAFGDCVEA 325

Query: 80  PFIKVEVT--KFTEIGYVGRNVEQIIRDLVDVAINIV 114
            F K  V   K   IG    NV ++     + A  IV
Sbjct: 326 TFFKCSVAELKGRHIGESAGNVRELWARAREAAPAIV 362



 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ +LL GP G GKT I+R LA+ AG  FI     +  +  Y+G+   +I +  
Sbjct: 545 VPRALLLYGPPGTGKTQIARTLAKEAGVAFIARSTAEL-KGQYLGQAASRIAQSF 598


>gi|255552398|ref|XP_002517243.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
 gi|223543614|gb|EEF45143.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
          Length = 802

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF+    T F E+ +VG
Sbjct: 343 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFLAANGTDFVEM-FVG 386


>gi|254393706|ref|ZP_05008829.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
 gi|294813216|ref|ZP_06771859.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
           27064]
 gi|326441673|ref|ZP_08216407.1| putative ATP-dependent Clp protease [Streptomyces clavuligerus ATCC
           27064]
 gi|197707316|gb|EDY53128.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
 gi|294325815|gb|EFG07458.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
           27064]
          Length = 841

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|217976966|ref|YP_002361113.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2]
 gi|217502342|gb|ACK49751.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2]
          Length = 643

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLIGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|170738214|ref|YP_001779474.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
 gi|169820402|gb|ACA94984.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 242 FVGVGAAR-VRDLFEQA 257


>gi|16186223|gb|AAL14019.1| SD09735p [Drosophila melanogaster]
          Length = 523

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
            F  +  +  T   +VG + E++++ L  VA             + A I  +E  +D+L+
Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVAA----------AHQPAIIFIDE--VDSLL 355

Query: 140 GKTATSNTREVFRKKLR-----DGEISDKEIDIEV 169
            K + +      R K       DG  S++EI + V
Sbjct: 356 SKRSANENESTLRLKNEFLIHLDGAASNEEIRVLV 390


>gi|183600360|ref|ZP_02961853.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
 gi|188020151|gb|EDU58191.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
          Length = 656

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|74141261|dbj|BAE35936.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSDQKPDVMYADIVGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|68535364|ref|YP_250069.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411]
 gi|68262963|emb|CAI36451.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411]
          Length = 885

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 508 FKLTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 561

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 562 FAGPSGVGKTELSKALAEF 580


>gi|89074749|ref|ZP_01161207.1| Putative ComM-related protein [Photobacterium sp. SKA34]
 gi|89049513|gb|EAR55074.1| Putative ComM-related protein [Photobacterium sp. SKA34]
          Length = 508

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 21/80 (26%)

Query: 2   KLTFNFS--PREIVSELDRY---IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI 56
           +L  NFS  P+E    LDR    IIGQQ  KRA+ IA                     N+
Sbjct: 172 QLALNFSEQPQETAVPLDRDMQDIIGQQQGKRALEIAAAGG----------------HNV 215

Query: 57  LLVGPTGVGKTAISRRLARL 76
           L +GP G GKT ++ RL  L
Sbjct: 216 LFLGPPGTGKTMLASRLCDL 235


>gi|150017388|ref|YP_001309642.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149903853|gb|ABR34686.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 578

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK +   V   L+N  + Q+  A      MPK ++L G  G GKT +++ +A  
Sbjct: 151 VAGNEEAKESLMDVVDFLKNPEKYQKYGAR-----MPKGVILYGDPGTGKTLLAKAVAGE 205

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           AG PF  +  + F ++ YVG
Sbjct: 206 AGVPFYALSGSDFVQV-YVG 224


>gi|119356264|ref|YP_910908.1| FtsH peptidase [Chlorobium phaeobacteroides DSM 266]
 gi|119353613|gb|ABL64484.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGASR-VRDLFEQA 298


>gi|326778547|ref|ZP_08237812.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658880|gb|EGE43726.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 863

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 515 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 568

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 569 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 611


>gi|302544384|ref|ZP_07296726.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462002|gb|EFL25095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 840

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|261345167|ref|ZP_05972811.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
 gi|282566859|gb|EFB72394.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|225158869|ref|ZP_03725184.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2]
 gi|224802561|gb|EEG20818.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK ILLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RD+ +
Sbjct: 254 IPKGILLVGPPGTGKTLLAKAVAGEAEVPFFSVSGSDFVEM-FVGVGASR-VRDMFE 308


>gi|158298490|ref|XP_318657.4| AGAP009625-PA [Anopheles gambiae str. PEST]
 gi|157013907|gb|EAA13814.4| AGAP009625-PA [Anopheles gambiae str. PEST]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167


>gi|115911530|ref|XP_783737.2| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
 gi|115955183|ref|XP_001188077.1| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
          Length = 603

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 361 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 416


>gi|58040123|ref|YP_192087.1| cell division protein FtsH [Gluconobacter oxydans 621H]
 gi|58002537|gb|AAW61431.1| Cell division protein FtsH [Gluconobacter oxydans 621H]
          Length = 634

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|53802726|ref|YP_115493.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus
           capsulatus str. Bath]
 gi|53756487|gb|AAU90778.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus
           capsulatus str. Bath]
          Length = 859

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L R ++GQQ+A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LSRRVVGQQEAITAVANAIR-RSR-----AGLADPNRPNGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTDEAMVRIDMSEFMEKHSVAR 645


>gi|320164406|gb|EFW41305.1| katanin 60-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 351

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 4   TFNFSP--REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-------- 53
           +FN S   +++V  L+R II +  + R   IA     +R    A +   L+P        
Sbjct: 41  SFNTSGYDKDLVESLERDIISKHPSVRWTDIADLENAKRLLEEAVVLPMLLPDYFTGIRR 100

Query: 54  --KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             K +L+VGP G GKT +++ +A   G  F  V  +  T   Y G + E+++R L D+A
Sbjct: 101 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSASTLTS-KYRG-DSEKLVRLLFDMA 157


>gi|306430715|emb|CBJ17104.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|281344710|gb|EFB20294.1| hypothetical protein PANDA_002316 [Ailuropoda melanoleuca]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|257053282|ref|YP_003131115.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940]
 gi|256692045|gb|ACV12382.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
           +L VGP G GKT+++R LA     PF++V+++  T   +G   +NVE+
Sbjct: 208 LLFVGPPGTGKTSVARALAHELDLPFVEVKLSMITSQYLGETAKNVEK 255


>gi|215408545|emb|CAR31122.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|164656006|ref|XP_001729131.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966]
 gi|159103021|gb|EDP41917.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966]
          Length = 835

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +      L+N  R ++L A +     P+  +L GP G GKT +++  A  
Sbjct: 348 VAGMDEAKQEIMEFVSFLKNPERYERLGAKI-----PRGAILSGPPGTGKTLVAKATAGE 402

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF+ V  ++F E+ +VG    + +RD+   A
Sbjct: 403 AGVPFLSVSGSEFVEM-FVGVGPSR-VRDMFATA 434


>gi|157148747|ref|YP_001456066.1| ATP-dependent metalloprotease [Citrobacter koseri ATCC BAA-895]
 gi|157085952|gb|ABV15630.1| hypothetical protein CKO_04579 [Citrobacter koseri ATCC BAA-895]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|149201484|ref|ZP_01878459.1| ATPase AAA-2 [Roseovarius sp. TM1035]
 gi|149145817|gb|EDM33843.1| ATPase AAA-2 [Roseovarius sp. TM1035]
          Length = 872

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R +IGQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ 
Sbjct: 563 ANLHRRVIGQNTAVKAVANAVR-RAR-----AGLNDEGRPLGSFLFLGPTGVGKTELTKA 616

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           +A       +  +++++++F E   V R
Sbjct: 617 VAEFLFDDDSAMVRIDMSEFMEKHSVSR 644


>gi|90962325|ref|YP_536241.1| cell division protein [Lactobacillus salivarius UCC118]
 gi|90821519|gb|ABE00158.1| Cell division protein [Lactobacillus salivarius UCC118]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 223 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 279


>gi|77359819|ref|YP_339394.1| cell division protease [Pseudoalteromonas haloplanktis TAC125]
 gi|76874730|emb|CAI85951.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 158 LRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM- 211

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 212 FVGVGASR-VRDMFEQA 227


>gi|116747494|ref|YP_844181.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
 gi|116696558|gb|ABK15746.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
          Length = 776

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L +GPTGVGKT ++++LAR+ G  F++ +++++ E   V R
Sbjct: 496 SFLFIGPTGVGKTEVAKQLARILGVNFLRFDMSEYMEKHTVAR 538


>gi|330446996|ref|ZP_08310647.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491187|dbj|GAA05144.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 858

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHHRVIGQDEAVEAVANAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTELCKSL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|327274725|ref|XP_003222127.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Anolis carolinensis]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|325684696|gb|EGD26850.1| cell division protein FtsH [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 704

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 261

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 262 FVGVGASR-VRDL 273


>gi|306430645|emb|CBJ17069.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|237784954|ref|YP_002905659.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237757866|gb|ACR17116.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 903

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ+DA ++V+ A+R R R     A L+D   P  + +
Sbjct: 513 FKLTEEESDRLLHMEEELHKRIIGQEDAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 566

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 567 FAGPSGVGKTELSKALAEF 585


>gi|224044753|ref|XP_002188188.1| PREDICTED: YME1-like 1 isoform 1 [Taeniopygia guttata]
          Length = 717

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 315 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 364


>gi|212710002|ref|ZP_03318130.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
 gi|212687411|gb|EEB46939.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|195471025|ref|XP_002087806.1| GE14905 [Drosophila yakuba]
 gi|194173907|gb|EDW87518.1| GE14905 [Drosophila yakuba]
          Length = 526

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 255 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 312

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG + E++++ L  VA
Sbjct: 313 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 341


>gi|194859742|ref|XP_001969441.1| GG23952 [Drosophila erecta]
 gi|190661308|gb|EDV58500.1| GG23952 [Drosophila erecta]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK ILL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGILLHGPPGCGKTLIAKATAKEAGMRFINLDVAVLTDKWY 173


>gi|149634676|ref|XP_001506505.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 3
           [Ornithorhynchus anatinus]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370


>gi|119470166|ref|ZP_01612932.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Alteromonadales bacterium TW-7]
 gi|119446587|gb|EAW27861.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Alteromonadales bacterium TW-7]
          Length = 753

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E +  +DR     + GQ  +  A+  A+R    R  L ++   E    + L  GPTG
Sbjct: 446 SDKETLKNIDRNLKMLVFGQDQSIDALTSAIR--LSRSGLTSE---EKPVGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           VGKT ++++LA+  G  FI+ +++++ E   + R
Sbjct: 501 VGKTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534


>gi|88607130|ref|YP_505053.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma
           phagocytophilum HZ]
 gi|88598193|gb|ABD43663.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma
           phagocytophilum HZ]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L + I GQ +A   V  A+R         A +R    P    L  GPTGVGKT 
Sbjct: 464 RDLEDNLKKVIFGQDEAITHVVDAIR------IAKAGMRSSQKPLACYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           + R+ A+  G   I+ +++++ E   V R +
Sbjct: 518 LVRQFAKCMGMKLIRFDMSEYVESHTVSRMI 548


>gi|74317151|ref|YP_314891.1| membrane protease FtsH catalytic subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056646|gb|AAZ97086.1| peptidase M41, FtsH [Thiobacillus denitrificans ATCC 25259]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLARSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|309782665|ref|ZP_07677386.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|308918443|gb|EFP64119.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 205 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFSQA 261


>gi|227891605|ref|ZP_04009410.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|301300311|ref|ZP_07206518.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|227866752|gb|EEJ74173.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|300214976|gb|ADJ79392.1| Cell division protein [Lactobacillus salivarius CECT 5713]
 gi|300852084|gb|EFK79761.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 223 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 279


>gi|198423267|ref|XP_002130593.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 [Ciona
           intestinalis]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ K AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 170 IQKQEVKEAVELPLTHFELYKQIGID-----PPRGVLMFGPPGCGKTMLAKAVAHHTTAS 224

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 225 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 252


>gi|156120349|ref|NP_001095320.1| ATP-dependent metalloprotease YME1L1 [Bos taurus]
 gi|151557121|gb|AAI50072.1| YME1L1 protein [Bos taurus]
 gi|296481444|gb|DAA23559.1| YME1-like 1 [Bos taurus]
          Length = 717

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|148979037|ref|ZP_01815282.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
 gi|145962010|gb|EDK27298.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|148224030|ref|NP_001088668.1| ATPase family, AAA domain containing 1 [Xenopus laevis]
 gi|56269500|gb|AAH87292.1| LOC495930 protein [Xenopus laevis]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|121605505|ref|YP_982834.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans
           CJ2]
 gi|120594474|gb|ABM37913.1| membrane protease FtsH catalytic subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKGIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFDNA 249


>gi|313206718|ref|YP_004045895.1| ATP-dependent metalloprotease ftsh [Riemerella anatipestifer DSM
           15868]
 gi|312446034|gb|ADQ82389.1| ATP-dependent metalloprotease FtsH [Riemerella anatipestifer DSM
           15868]
 gi|315023788|gb|EFT36790.1| Cell division protein ftsH [Riemerella anatipestifer RA-YM]
 gi|325335842|gb|ADZ12116.1| ATP-dependent Zn protease [Riemerella anatipestifer RA-GD]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 218 IPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 270


>gi|302669466|ref|YP_003829426.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus
           B316]
 gi|302393939|gb|ADL32844.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus
           B316]
          Length = 756

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK +   V   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 195 VAGEDEAKESLVEVVDFLHNPAKYAKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 249

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ YVG    + +RDL   A
Sbjct: 250 AHVPFYSLAGSDFIEL-YVGVGASR-VRDLFSEA 281


>gi|260578411|ref|ZP_05846325.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603433|gb|EEW16696.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Corynebacterium jeikeium ATCC 43734]
          Length = 885

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +
Sbjct: 508 FKLTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 561

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 562 FAGPSGVGKTELSKALAEF 580


>gi|303278730|ref|XP_003058658.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459818|gb|EEH57113.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1119

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ++L GP G GKT ++R +A  +GA F  +  ++F E+ +VG    + +RDL
Sbjct: 654 VPKGVMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEM-FVGVGAAR-VRDL 706


>gi|268592831|ref|ZP_06127052.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
 gi|291311617|gb|EFE52070.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
          Length = 659

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|197334360|ref|YP_002155235.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11]
 gi|197315850|gb|ACH65297.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P  +LLVGP G GKT I++ +A  A  PF  +  + F E+ 
Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|169236655|ref|YP_001689855.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|167727721|emb|CAP14509.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 438

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +L VGP G GKT+ +R LA     PF++V+++  T   +G   +NVE++ 
Sbjct: 205 LLFVGPPGTGKTSTARGLAHQLDLPFVEVKLSMITSQYLGETAKNVEKVF 254


>gi|134099492|ref|YP_001105153.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912115|emb|CAM02228.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 272 ELHKRIIGQDDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 325

Query: 74  ARL 76
           A  
Sbjct: 326 AEF 328


>gi|147902617|ref|NP_001084592.1| YME1-like 1 [Xenopus laevis]
 gi|46250073|gb|AAH68681.1| MGC81087 protein [Xenopus laevis]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|118348546|ref|XP_001007748.1| 26S proteasome subunit P45 family protein [Tetrahymena thermophila]
 gi|89289515|gb|EAR87503.1| 26S proteasome subunit P45 family protein [Tetrahymena thermophila
           SB210]
          Length = 441

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K AV + L      QQ+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 157 KQEMKEAVELPLTYPELYQQIGID-----PPRGVLMYGPPGTGKTMMAKAVAHHTTAAFI 211

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 212 RVVGSEFVQ-KYLGEG-PRMVRDVFKLA 237


>gi|78062370|ref|YP_372278.1| FtsH-2 peptidase [Burkholderia sp. 383]
 gi|77970255|gb|ABB11634.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R Q+L   +     PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 222 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 275

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 276 FVGVGAAR-VRDLFEQA 291


>gi|15790910|ref|NP_280734.1| AAA superfamily ATPase [Halobacterium sp. NRC-1]
 gi|10581481|gb|AAG20214.1| aaa superfamily atpase [Halobacterium sp. NRC-1]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +L VGP G GKT+ +R LA     PF++V+++  T   +G   +NVE++ 
Sbjct: 136 LLFVGPPGTGKTSTARGLAHQLDLPFVEVKLSMITSQYLGETAKNVEKVF 185


>gi|87123506|ref|ZP_01079357.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. RS9917]
 gi|86169226|gb|EAQ70482.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Synechococcus sp. RS9917]
          Length = 913

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ ++L + +IGQ +A +AVA A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 603 ELETQLQQRVIGQPEAVQAVASAIR-RAR-----AGMKDPRRPVGSFLFLGPTGVGKTEL 656

Query: 70  SRRL-ARL--AGAPFIKVEVTKFTEIGYVGR 97
           ++ L ARL       +++++++F E   V R
Sbjct: 657 AKALAARLFDEEEALVRLDMSEFMERNAVAR 687


>gi|291401928|ref|XP_002717328.1| PREDICTED: YME1-like 1 [Oryctolagus cuniculus]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|261868122|ref|YP_003256044.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413454|gb|ACX82825.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 609

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEKA 238


>gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
 gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
          Length = 678

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 216 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 272


>gi|237725806|ref|ZP_04556287.1| ATP-dependent Clp protease [Bacteroides sp. D4]
 gi|229435614|gb|EEO45691.1| ATP-dependent Clp protease [Bacteroides dorei 5_1_36/D4]
          Length = 745

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|218710451|ref|YP_002418072.1| cell division protein FtsH [Vibrio splendidus LGP32]
 gi|218323470|emb|CAV19647.1| cell division protein FtsH [Vibrio splendidus LGP32]
          Length = 659

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 176 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 230 FVGVGASR-VRDMFEQA 245


>gi|167957096|ref|ZP_02544170.1| Mg chelatase, subunit ChlI [candidate division TM7 single-cell
           isolate TM7c]
          Length = 507

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 17/77 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I GQ+ AKRA+ IA+  R                 NILL GP G GKT +++ L  L   
Sbjct: 197 IYGQEQAKRAIQIAVAGRH----------------NILLSGPPGSGKTMLAKSLKNLL-P 239

Query: 80  PFIKVEVTKFTEIGYVG 96
           P  K E+ + T++  +G
Sbjct: 240 PLSKTEIVEVTKLHNLG 256


>gi|149913689|ref|ZP_01902222.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter
           sp. AzwK-3b]
 gi|149812809|gb|EDM72638.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter
           sp. AzwK-3b]
          Length = 777

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A+A +++         A LR+   P  N L  GPTGVGKT 
Sbjct: 464 KDLERSLKRVVFGQDPAIEALASSIKLAR------AGLREPDKPIGNYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 518 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574


>gi|119471555|ref|ZP_01613969.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Alteromonadales bacterium TW-7]
 gi|119445498|gb|EAW26784.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Alteromonadales bacterium TW-7]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|59711086|ref|YP_203862.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114]
 gi|59479187|gb|AAW84974.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P  +LLVGP G GKT I++ +A  A  PF  +  + F E+ 
Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|301784304|ref|XP_002927570.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Ailuropoda
           melanoleuca]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|262372531|ref|ZP_06065810.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           junii SH205]
 gi|262312556|gb|EEY93641.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           junii SH205]
          Length = 761

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 16/104 (15%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L R + GQ +A  A+A A++    R  L A  +      + +  GPTGVGKT ++++LA
Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGSFVFAGPTGVGKTEVTKQLA 508

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           +L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 509 KLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 552


>gi|225868953|ref|YP_002744901.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702229|emb|CAW99972.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Streptococcus equi subsp. zooepidemicus]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L +++IGQ DA   +A A+R    R  L A  R    P  + L VGPTGVGKT +S
Sbjct: 446 LAADLKKHVIGQDDAVDKIAKAIRRN--RVGLGAPNR----PIGSFLFVGPTGVGKTELS 499

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ  
Sbjct: 500 KQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQVR 551

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   + K A  +   +F + L DG ++D +
Sbjct: 552 RNPYSLILLDEIEK-AHPDVMHMFLQVLDDGRLTDGQ 587


>gi|215408579|emb|CAR31139.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|187926562|ref|YP_001892907.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|241666072|ref|YP_002984431.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|187728316|gb|ACD29480.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|240868099|gb|ACS65759.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 663

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 221 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFSQA 277


>gi|47221159|emb|CAG05480.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 714

 Score = 43.1 bits (100), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|328683465|ref|NP_001126430.1| ATP-dependent metalloprotease YME1L1 [Pongo abelii]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|322831209|ref|YP_004211236.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
 gi|321166410|gb|ADW72109.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|320540171|ref|ZP_08039826.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
 gi|320029837|gb|EFW11861.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|313905377|ref|ZP_07838743.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313469847|gb|EFR65183.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 617

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 262


>gi|307294667|ref|ZP_07574509.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum
           L-1]
 gi|306879141|gb|EFN10359.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum
           L-1]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|294012452|ref|YP_003545912.1| cell division protease FtsH [Sphingobium japonicum UT26S]
 gi|292675782|dbj|BAI97300.1| cell division protease FtsH [Sphingobium japonicum UT26S]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|219128649|ref|XP_002184520.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403970|gb|EEC43919.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 514

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ +A  A  PF     ++F E+ YVG   ++ IR+L + A
Sbjct: 112 LPRGLLLTGPPGTGKTLLAKAIAGEADVPFFYSSGSQFEEV-YVGLGAKR-IRELFEAA 168


>gi|195977741|ref|YP_002122985.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974446|gb|ACG61972.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 750

 Score = 43.1 bits (100), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L +++IGQ DA   +A A+R    R  L A  R    P  + L VGPTGVGKT +S
Sbjct: 445 LAADLKKHVIGQDDAVDKIAKAIR--RNRVGLGAPNR----PIGSFLFVGPTGVGKTELS 498

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ  
Sbjct: 499 KQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQVR 550

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   + K A  +   +F + L DG ++D +
Sbjct: 551 RNPYSLILLDEIEK-AHPDVMHMFLQVLDDGRLTDGQ 586


>gi|332535917|ref|ZP_08411627.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034704|gb|EGI71253.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|296206357|ref|XP_002750180.1| PREDICTED: ATP-dependent metalloprotease YME1L1 isoform 1
           [Callithrix jacchus]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|215408577|emb|CAR31138.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|215408549|emb|CAR31124.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|215408541|emb|CAR31120.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|195115631|ref|XP_002002360.1| GI13150 [Drosophila mojavensis]
 gi|193912935|gb|EDW11802.1| GI13150 [Drosophila mojavensis]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 24  QDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           Q+ + +V + +R+R  ++R QL         PK +LL GP G GKT I++ +A+ A   F
Sbjct: 104 QELRESVVLPVRHRDLFQRSQLWRP------PKGVLLYGPPGCGKTLIAKAMAKEADMRF 157

Query: 82  IKVEVTKFTEIGY 94
           I ++V   T+  Y
Sbjct: 158 INLDVALLTDKWY 170


>gi|145493015|ref|XP_001432504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399616|emb|CAK65107.1| unnamed protein product [Paramecium tetraurelia]
          Length = 780

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL GP G GKT +++  A  AG PF  V  + F E+ +VG    + +RDL   A
Sbjct: 374 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 430


>gi|14248493|gb|AAK57555.1|AF151782_1 ATP-dependent metalloprotease FtsH1 homolog [Homo sapiens]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420


>gi|78185968|ref|YP_374011.1| peptidase M41, FtsH [Chlorobium luteolum DSM 273]
 gi|123583630|sp|Q3B6R3|FTSH_PELLD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|78165870|gb|ABB22968.1| membrane protease FtsH catalytic subunit [Chlorobium luteolum DSM
           273]
          Length = 706

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 231 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 283


>gi|317420108|emb|CBN82144.1| ATP-dependent metalloprotease YME1L1 [Dicentrarchus labrax]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 296 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 345


>gi|301607162|ref|XP_002933186.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Xenopus
           (Silurana) tropicalis]
          Length = 727

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 325 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 374


>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
 gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
          Length = 883

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDV 109
           P+ ILL GP G GKT ++  +A     PF+KV   +    G  G +   + QI RD +  
Sbjct: 259 PRGILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVS-GMSGESEAKIRQIFRDAISN 317

Query: 110 AINIVRESRRDEV---REQASINAEERILDALV 139
           A +I+     D +   R+ AS   E+RI+  L+
Sbjct: 318 APSIIFIDEIDAILSKRDNASKEMEKRIVAQLI 350


>gi|262363432|gb|ACY60153.1| cell division protein [Yersinia pestis D106004]
          Length = 573

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|255318896|ref|ZP_05360122.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262378849|ref|ZP_06072006.1| cell division protein [Acinetobacter radioresistens SH164]
 gi|255304152|gb|EET83343.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262300134|gb|EEY88046.1| cell division protein [Acinetobacter radioresistens SH164]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|256823581|ref|YP_003147544.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069]
 gi|256797120|gb|ACV27776.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|212691639|ref|ZP_03299767.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
 gi|212665828|gb|EEB26400.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
          Length = 745

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|194227083|ref|XP_001495983.2| PREDICTED: YME1-like 1 (S. cerevisiae) [Equus caballus]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|78043977|ref|YP_359086.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996092|gb|ABB14991.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 619

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  +L A +     PK +LL G  G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 177 LKNPRKYNELGARI-----PKGVLLFGQPGTGKTLLARAIAGEAGVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 231 FVGVGASR-VRDLFEQA 246


>gi|29840520|ref|NP_829626.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC]
 gi|29834869|gb|AAP05504.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC]
          Length = 913

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|55731422|emb|CAH92425.1| hypothetical protein [Pongo abelii]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|312138354|ref|YP_004005690.1| clp peptidase ATP-binding subunit [Rhodococcus equi 103S]
 gi|311887693|emb|CBH47005.1| putative Clp peptidase ATP-binding subunit [Rhodococcus equi 103S]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL R ++GQ+DA +A+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 503 RRLEDELHRRVVGQEDAVKAIARAVR-RSR-----TGMGDPRRPVGSFLFLGPTGVGKTE 556

Query: 69  ISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96
           +++ LA+ L G  +  +++++++F E            GYVG
Sbjct: 557 LAKALAQSLFGDESKMLRLDMSEFGERHTASRLVGAPPGYVG 598


>gi|307177290|gb|EFN66468.1| ATPase family AAA domain-containing protein 1-B [Camponotus
           floridanus]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           +R++L  D +    PK +LL GP G GKT I++  AR A   FI ++V+  T+  Y
Sbjct: 118 QRKELFEDSQLTQAPKGVLLYGPPGCGKTMIAKATAREAKTRFINLDVSILTDKWY 173


>gi|306430711|emb|CBJ17102.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430723|emb|CBJ17108.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430745|emb|CBJ17119.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|285017955|ref|YP_003375666.1| cell division protein ftsh (ATP-dependent zinc metallopeptidase)
           [Xanthomonas albilineans GPE PC73]
 gi|283473173|emb|CBA15679.1| probable cell division protein ftsh (atp-dependent zinc
           metallopeptidase) [Xanthomonas albilineans]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|297300679|ref|XP_002805638.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 1
           [Macaca mulatta]
 gi|297300683|ref|XP_002805640.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 3
           [Macaca mulatta]
 gi|67970978|dbj|BAE01831.1| unnamed protein product [Macaca fascicularis]
          Length = 717

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 315 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 364


>gi|332993369|gb|AEF03424.1| ATP-dependent metalloprotease FtsH [Alteromonas sp. SN2]
          Length = 645

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|332833800|ref|XP_507710.3| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Pan
           troglodytes]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420


>gi|315127240|ref|YP_004069243.1| cell division protease [Pseudoalteromonas sp. SM9913]
 gi|315015754|gb|ADT69092.1| cell division protease [Pseudoalteromonas sp. SM9913]
          Length = 632

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 171 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227


>gi|313884430|ref|ZP_07818191.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620214|gb|EFR31642.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 688

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDLFENA 276


>gi|237711935|ref|ZP_04542416.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
 gi|229454630|gb|EEO60351.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
          Length = 745

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|257386800|ref|YP_003176573.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257169107|gb|ACV46866.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 459

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
            +L VGP G GKT+++R LA+    PF++V+++  T   +G   +NVE+
Sbjct: 208 KLLFVGPPGTGKTSVARALAQDLDLPFVEVKLSMITSQYLGETAKNVEK 256


>gi|237844257|ref|XP_002371426.1| clpB protein, putative [Toxoplasma gondii ME49]
 gi|211969090|gb|EEB04286.1| clpB protein, putative [Toxoplasma gondii ME49]
          Length = 970

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L   +IGQ DA +AVA A+ R R       A L  E MP  + L +GPTGVGKT +++ L
Sbjct: 583 LHSRVIGQDDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635

Query: 74  AR---LAGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F+E   V R
Sbjct: 636 AMEMFHSEKNLIRIDMSEFSEAHSVSR 662


>gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus
           Nankai-3]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT +++ +A  AGA F  +     ++K+  +G    N+ +I  D  +
Sbjct: 210 PKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKY--VGETEENLRKIFEDAEE 267

Query: 109 VAINIVRESRRDEV---REQASINAEER-------ILDALVGK-----TATSNTREVFRK 153
            A +I+     D V   R++AS   E R       ++D L G+      A +N  +    
Sbjct: 268 EAPSIIFIDEIDSVAPKRDEASGEVERRMVAQLLTLMDGLGGRGQVVVIAATNRPDSLDG 327

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR     D+E+ I V D
Sbjct: 328 ALRRPGRFDRELTIGVPD 345


>gi|90416125|ref|ZP_01224057.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2207]
 gi|90331850|gb|EAS47064.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2207]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 245


>gi|7657689|ref|NP_055078.1| ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Homo sapiens]
 gi|5689742|emb|CAB51858.1| ATP-dependent metalloprotease YME1L [Homo sapiens]
 gi|18645121|gb|AAH24032.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|23270684|gb|AAH23507.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|37182091|gb|AAQ88848.1| YME1L1 [Homo sapiens]
 gi|55957857|emb|CAI12217.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|55958289|emb|CAI16906.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|119606474|gb|EAW86068.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|119606476|gb|EAW86070.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|168275762|dbj|BAG10601.1| ATP-dependent metalloprotease YME1L1 [synthetic construct]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|332833796|ref|XP_003312540.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Pan
           troglodytes]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|306430727|emb|CBJ17110.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430729|emb|CBJ17111.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430731|emb|CBJ17112.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430735|emb|CBJ17114.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430737|emb|CBJ17115.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430739|emb|CBJ17116.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|302875741|ref|YP_003844374.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307689172|ref|ZP_07631618.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302578598|gb|ADL52610.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 579

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G ++AK +V      L+N  + ++  A      MPK I+L G  G GKT +++ +A  
Sbjct: 151 IAGNEEAKESVMDIIDFLKNPQKYREYGAR-----MPKGIILYGDPGTGKTLLAKAVAGE 205

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           AG PF  +  + F ++ YVG    +I
Sbjct: 206 AGVPFYAMSGSDFIQV-YVGVGASRI 230


>gi|195397604|ref|XP_002057418.1| GJ18117 [Drosophila virilis]
 gi|194141072|gb|EDW57491.1| GJ18117 [Drosophila virilis]
          Length = 376

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           QD + +V + +R+R     L  + +    P+ +LL GP G GKT I++  A+ AG  FI 
Sbjct: 107 QDLRESVVLPVRHR----DLFKESKLWQAPRGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162

Query: 84  VEVTKFTEIGY 94
           ++V   T+  Y
Sbjct: 163 LDVAILTDKWY 173


>gi|188996041|ref|YP_001930292.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931108|gb|ACD65738.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 625

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 179 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 234


>gi|158256020|dbj|BAF83981.1| unnamed protein product [Homo sapiens]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363


>gi|126321956|ref|XP_001371403.1| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Monodelphis domestica]
          Length = 851

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 371 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 424

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  VA
Sbjct: 425 FVGVGPAR-VRDLFSVA 440


>gi|118602186|ref|YP_903401.1| ATP-dependent metalloprotease FtsH [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567125|gb|ABL01930.1| membrane protease FtsH catalytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGVLLVGPPGTGKTLLAKAIAGEADVPFFFISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|118588321|ref|ZP_01545730.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM
           12614]
 gi|118439027|gb|EAV45659.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM
           12614]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|73948849|ref|XP_535172.2| PREDICTED: similar to YME1-like 1 isoform 3 [Canis familiaris]
          Length = 804

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 402 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 451


>gi|332240522|ref|XP_003269436.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Nomascus leucogenys]
          Length = 756

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 354 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 403


>gi|325282674|ref|YP_004255215.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324314483|gb|ADY25598.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  AG P+  V  + F E+ +VG    + +RDL + A
Sbjct: 225 IPHGLLLVGPPGSGKTLLAKAVAGEAGVPYFAVSGSDFVEM-FVGVGAAR-VRDLFEQA 281


>gi|262369450|ref|ZP_06062778.1| cell division protein [Acinetobacter johnsonii SH046]
 gi|262315518|gb|EEY96557.1| cell division protein [Acinetobacter johnsonii SH046]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|254697961|ref|ZP_05159789.1| FtsH, cell division protein FtsH [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 16  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 72


>gi|254472982|ref|ZP_05086380.1| cell division protease FtsH [Pseudovibrio sp. JE062]
 gi|211957703|gb|EEA92905.1| cell division protease FtsH [Pseudovibrio sp. JE062]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 769

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PK +LL GP G GKT +++ +A  AG PF      +F E+ +VG    + +RDL
Sbjct: 265 PKGVLLYGPPGTGKTLLAKAIAGEAGVPFFSASGAEFVEM-FVGVAAAR-VRDL 316


>gi|126341222|ref|XP_001367162.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 1
           [Monodelphis domestica]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|308808586|ref|XP_003081603.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116060068|emb|CAL56127.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 749

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           P  ++LVG  G GKT ++R +A  AG PFI +  ++F E+   G
Sbjct: 294 PSGVMLVGAPGTGKTLLARAVAGEAGVPFISISASEFVELSRYG 337


>gi|114631648|ref|XP_001138328.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|114762057|ref|ZP_01441525.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pelagibaca
           bermudensis HTCC2601]
 gi|114545081|gb|EAU48084.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. HTCC2601]
          Length = 776

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 463 KDLEKTLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   ++ +++++ E   V R
Sbjct: 517 VAKQLASTLGVELLRFDMSEYMEKHAVSR 545


>gi|21327685|ref|NP_647473.1| ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Homo sapiens]
 gi|46397258|sp|Q96TA2|YMEL1_HUMAN RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=Meg-4; AltName: Full=Presenilin-associated
           metalloprotease; Short=PAMP; AltName: Full=YME1-like
           protein 1
 gi|55957858|emb|CAC19650.2| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|55958290|emb|CAI16907.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|119606475|gb|EAW86069.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|119606478|gb|EAW86072.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420


>gi|88860504|ref|ZP_01135142.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas tunicata D2]
 gi|88817702|gb|EAR27519.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas tunicata D2]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 171 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227


>gi|84514618|ref|ZP_01001982.1| Chaperone ClpB [Loktanella vestfoldensis SKA53]
 gi|84511669|gb|EAQ08122.1| Chaperone ClpB [Loktanella vestfoldensis SKA53]
          Length = 882

 Score = 43.1 bits (100), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+ A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 575 LGKRVIGQKTAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 628

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 629 EYLFDDDSAMVRIDMSEFMEKHAVSR 654


>gi|328914941|gb|AEB55774.1| cell division protein FtsH [Chlamydophila psittaci 6BC]
          Length = 907

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 452 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 508


>gi|311265757|ref|XP_003130808.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Sus scrofa]
          Length = 739

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 337 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 386


>gi|306430671|emb|CBJ17082.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430673|emb|CBJ17083.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 714

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 255 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDMFQQA 311


>gi|225849953|ref|YP_002730187.1| cell division protease FtsH [Persephonella marina EX-H1]
 gi|225645469|gb|ACO03655.1| cell division protease FtsH [Persephonella marina EX-H1]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 186 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 241


>gi|254502453|ref|ZP_05114604.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia
           alexandrii DFL-11]
 gi|222438524|gb|EEE45203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia
           alexandrii DFL-11]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT ++R+L
Sbjct: 451 DLKRVVYGQDNAIETLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQL 504

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   I+ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 505 ASSMGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 556


>gi|221481384|gb|EEE19774.1| ClpB protein, putative [Toxoplasma gondii GT1]
 gi|221502016|gb|EEE27766.1| ClpB protein, putative [Toxoplasma gondii VEG]
          Length = 970

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L   +IGQ DA +AVA A+ R R       A L  E MP  + L +GPTGVGKT +++ L
Sbjct: 583 LHSRVIGQDDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635

Query: 74  AR---LAGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F+E   V R
Sbjct: 636 AMEMFHSEKNLIRIDMSEFSEAHSVSR 662


>gi|218190620|gb|EEC73047.1| hypothetical protein OsI_06998 [Oryza sativa Indica Group]
 gi|222622734|gb|EEE56866.1| hypothetical protein OsJ_06499 [Oryza sativa Japonica Group]
          Length = 442

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 173 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 227

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 228 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 255


>gi|194246849|ref|YP_002004490.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|310943105|sp|B3R0R7|FTSH3_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|193807208|emb|CAP18651.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 599

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 206 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 264

Query: 112 N 112
           N
Sbjct: 265 N 265


>gi|190344740|gb|EDK36481.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 807

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 344 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 400


>gi|171463557|ref|YP_001797670.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193095|gb|ACB44056.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 621

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPHGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFENA 238


>gi|149634674|ref|XP_001506478.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 2
           [Ornithorhynchus anatinus]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|150863826|ref|XP_001382432.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149385082|gb|ABN64403.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 787

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 318 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 374


>gi|148244302|ref|YP_001218996.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
 gi|146326129|dbj|BAF61272.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGVLLVGPPGTGKTLLAKAIAGEADVPFFFISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|146305021|ref|YP_001192337.1| proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
 gi|145703271|gb|ABP96413.1| Proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
          Length = 379

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT +++ +A  + A FI V  ++F +  +VG    +++RD+ ++A
Sbjct: 155 PKGILLYGPPGTGKTMLAKAVATESNASFIHVVASEFAQ-KFVGEGA-RVVRDVFELA 210


>gi|304321616|ref|YP_003855259.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Parvularcula bermudensis HTCC2503]
 gi|303300518|gb|ADM10117.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Parvularcula bermudensis HTCC2503]
          Length = 782

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 456 RNMGGDLKRVVYGQDKAIDALTAAIKLAR------AGLREPDKPIGSYLFAGPTGVGKTE 509

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA++ G   ++ +++++ E   V R
Sbjct: 510 VAKQLAKMMGVELLRFDMSEYMERHTVSR 538


>gi|68171365|ref|ZP_00544760.1| Peptidase M41, FtsH [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657587|ref|YP_507882.1| ATP-dependent metalloprotease FtsH [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999215|gb|EAM85870.1| Peptidase M41, FtsH [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599044|gb|ABD44513.1| ATP-dependent metalloprotease FtsH [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R Q+L   +     PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 175 LKHRQRFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 229 FVGVGASR-VRDMFE 242


>gi|325924511|ref|ZP_08186030.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325545006|gb|EGD16341.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|323127111|gb|ADX24408.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 699

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 23/103 (22%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 407 KEISNRLKEHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 459

Query: 68  AISRRLA-RLAGA--PFIKVEVTKF-----------TEIGYVG 96
            ++++LA  L G+    I+++++++           T  GYVG
Sbjct: 460 ELAKQLALDLFGSKEAIIRLDMSEYSDRTAVSKLIGTTAGYVG 502


>gi|297620921|ref|YP_003709058.1| putative cell division protein FtsH [Waddlia chondrophila WSU
           86-1044]
 gi|297376222|gb|ADI38052.1| putative cell division protein FtsH [Waddlia chondrophila WSU
           86-1044]
          Length = 920

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|242033579|ref|XP_002464184.1| hypothetical protein SORBIDRAFT_01g013750 [Sorghum bicolor]
 gi|241918038|gb|EER91182.1| hypothetical protein SORBIDRAFT_01g013750 [Sorghum bicolor]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P    S++    I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT 
Sbjct: 162 PNVTYSDIGGCDIQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTM 216

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 217 LAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|237756504|ref|ZP_04585035.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691333|gb|EEP60410.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 632

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 186 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 241


>gi|126341224|ref|XP_001367208.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 2
           [Monodelphis domestica]
          Length = 772

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 370 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 419


>gi|14043646|gb|AAH07795.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
          Length = 740

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420


>gi|219683162|ref|YP_002469545.1| ATP-dependent chaperone ClpB [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|61679305|gb|AAX52932.1| ClpB [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|219620812|gb|ACL28969.1| ATP-dependent chaperone ClpB [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|289177621|gb|ADC84867.1| ClpB [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 899

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L+R +IGQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 578 LNRRVIGQPEAVRAVSDAVR-RSR-----AGLSDPNRPTGSFLFMGPTGVGKTELAKALA 631

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     I+++++++ E   V R
Sbjct: 632 EFLFDDEKAMIRIDMSEYMEKSSVSR 657


>gi|73667492|ref|YP_303508.1| FtsH peptidase [Ehrlichia canis str. Jake]
 gi|72394633|gb|AAZ68910.1| membrane protease FtsH catalytic subunit [Ehrlichia canis str.
           Jake]
          Length = 611

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R Q+L   +     PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 175 LKHRQRFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 229 FVGVGASR-VRDMFE 242


>gi|73539018|ref|YP_299385.1| FtsH-2 peptidase [Ralstonia eutropha JMP134]
 gi|72122355|gb|AAZ64541.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Ralstonia
           eutropha JMP134]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+G  G GKT ++R +A  AG PF  +  ++F E+ +VG    + +RDL
Sbjct: 204 IPKGVLLLGAPGTGKTLLARAVAGEAGVPFFSMSGSEFVEL-FVGVGAAR-VRDL 256


>gi|84387292|ref|ZP_00990313.1| cell division protein FtsH [Vibrio splendidus 12B01]
 gi|84377939|gb|EAP94801.1| cell division protein FtsH [Vibrio splendidus 12B01]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
           yoelii]
          Length = 703

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT I+R +A  A  PFI+   ++F E+ +VG    + IR+L   A
Sbjct: 283 LPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEM-FVGVGARR-IRELFQTA 339


>gi|302813987|ref|XP_002988678.1| hypothetical protein SELMODRAFT_427368 [Selaginella moellendorffii]
 gi|300143499|gb|EFJ10189.1| hypothetical protein SELMODRAFT_427368 [Selaginella moellendorffii]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT +  P    +E+    + +Q+ + AV + L +    +QL  D      PK +LL G  
Sbjct: 128 LTDSLRPEVTYAEIGGLELQKQEIREAVELPLTHPELYRQLGVD-----PPKGVLLYGAP 182

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT + + +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 183 GTGKTMLVKAVAHHTSAAFIRVVASEFVQ-KYLGEG-PRMMRDVFKLA 228


>gi|265753170|ref|ZP_06088739.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
 gi|263236356|gb|EEZ21851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
          Length = 745

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GYVG     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554


>gi|241952773|ref|XP_002419108.1| mitochondrial respiratory chain complexes assembly protein,
           putative [Candida dubliniensis CD36]
 gi|223642448|emb|CAX42693.1| mitochondrial respiratory chain complexes assembly protein,
           putative [Candida dubliniensis CD36]
          Length = 792

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 318 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 374


>gi|146329792|ref|YP_001210114.1| ATP-dependent protease FtsH [Dichelobacter nodosus VCS1703A]
 gi|146233262|gb|ABQ14240.1| ATP-dependent protease FtsH [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|147902655|ref|NP_001082983.1| ATP-dependent metalloprotease YME1L1 [Danio rerio]
 gi|141796357|gb|AAI39530.1| Zgc:162158 protein [Danio rerio]
          Length = 722

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 320 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 369


>gi|85375029|ref|YP_459091.1| ATP-dependent Zn protease [Erythrobacter litoralis HTCC2594]
 gi|84788112|gb|ABC64294.1| ATP-dependent Zn protease [Erythrobacter litoralis HTCC2594]
          Length = 652

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 203 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 259


>gi|238793016|ref|ZP_04636645.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
 gi|238727616|gb|EEQ19141.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|68468373|ref|XP_721746.1| hypothetical protein CaO19.1669 [Candida albicans SC5314]
 gi|68468616|ref|XP_721627.1| hypothetical protein CaO19.9238 [Candida albicans SC5314]
 gi|46443550|gb|EAL02831.1| hypothetical protein CaO19.9238 [Candida albicans SC5314]
 gi|46443678|gb|EAL02958.1| hypothetical protein CaO19.1669 [Candida albicans SC5314]
          Length = 795

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 319 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 375


>gi|68472621|ref|XP_719629.1| hypothetical protein CaO19.9604 [Candida albicans SC5314]
 gi|68472880|ref|XP_719505.1| hypothetical protein CaO19.2057 [Candida albicans SC5314]
 gi|46441325|gb|EAL00623.1| hypothetical protein CaO19.2057 [Candida albicans SC5314]
 gi|46441454|gb|EAL00751.1| hypothetical protein CaO19.9604 [Candida albicans SC5314]
          Length = 846

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L+N  + ++L A +     P+  +L GP G GKT +++  A  
Sbjct: 375 VAGMAEAKQEVMEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 429

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 430 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 461


>gi|332187453|ref|ZP_08389191.1| ATP-dependent metallopeptidase HflB family protein [Sphingomonas
           sp. S17]
 gi|332012614|gb|EGI54681.1| ATP-dependent metallopeptidase HflB family protein [Sphingomonas
           sp. S17]
          Length = 636

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|317496968|ref|ZP_07955298.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895980|gb|EFV18132.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 696

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL +++IGQ +A  AVA A++ R R       L+    P  + L +GPTGVGKT 
Sbjct: 385 RHLEKELHKHVIGQDEAVNAVAKAVK-RSR-----VGLKSPNRPIGSFLFLGPTGVGKTE 438

Query: 69  ISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96
           +S+ LA+ L G     I+V+++++ E            GYVG
Sbjct: 439 LSKTLAKALFGREEDLIRVDMSEYMEKHSVSKIIGSPPGYVG 480


>gi|329943106|ref|ZP_08291880.1| ATP-dependent metallopeptidase HflB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287688|ref|YP_004422589.1| cell division protein [Chlamydophila psittaci 6BC]
 gi|313848262|emb|CBY17263.1| putative cell division protein [Chlamydophila psittaci RD1]
 gi|325506440|gb|ADZ18078.1| cell division protein [Chlamydophila psittaci 6BC]
 gi|328814653|gb|EGF84643.1| ATP-dependent metallopeptidase HflB family protein [Chlamydophila
           psittaci Cal10]
          Length = 913

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|253997067|ref|YP_003049131.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
 gi|253983746|gb|ACT48604.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
          Length = 632

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFENA 243


>gi|238881883|gb|EEQ45521.1| hypothetical protein CAWG_03849 [Candida albicans WO-1]
          Length = 846

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L+N  + ++L A +     P+  +L GP G GKT +++  A  
Sbjct: 375 VAGMAEAKQEVMEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 429

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 430 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 461


>gi|238880604|gb|EEQ44242.1| hypothetical protein CAWG_02507 [Candida albicans WO-1]
          Length = 795

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 319 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 375


>gi|149634678|ref|XP_001506440.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 1
           [Ornithorhynchus anatinus]
          Length = 766

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 364 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 413


>gi|103487084|ref|YP_616645.1| ATP-dependent metalloprotease FtsH [Sphingopyxis alaskensis RB2256]
 gi|98977161|gb|ABF53312.1| ATP-dependent metalloprotease FtsH [Sphingopyxis alaskensis RB2256]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 251


>gi|183602738|ref|ZP_02964101.1| protease of ClpA/ClpB type [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191496|ref|YP_002968890.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196901|ref|YP_002970456.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183217976|gb|EDT88624.1| protease of ClpA/ClpB type [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249888|gb|ACS46828.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251455|gb|ACS48394.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794488|gb|ADG34023.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 895

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L+R +IGQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 574 LNRRVIGQPEAVRAVSDAVR-RSR-----AGLSDPNRPTGSFLFMGPTGVGKTELAKALA 627

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     I+++++++ E   V R
Sbjct: 628 EFLFDDEKAMIRIDMSEYMEKSSVSR 653


>gi|168037334|ref|XP_001771159.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677539|gb|EDQ64008.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1878

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 16/138 (11%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDVA 110
           +LLVG TG GKT++ + LA   G P I + +++ T+      GY     + +   L++  
Sbjct: 358 VLLVGETGTGKTSVVQHLAWQLGVPLIVLNMSQQTDSADFLGGYKPVEAQGVCMPLLENF 417

Query: 111 INIVRES----RRDEVREQASINAEERILDALVGKTATS-------NTREVFRKKLRDGE 159
             + RE+    +  E+ E     AE+R  D L+    TS       N R + R +    E
Sbjct: 418 NTLFRETFPKKKNAELLEHVLRFAEKRKWDRLLKSFRTSPKRRRPLNNRLLSRWRAFTSE 477

Query: 160 ISDKEIDIEVADTSSDIS 177
           +   E  +E A+T    S
Sbjct: 478 LRKAERQVEAANTGFAFS 495


>gi|149028588|gb|EDL83929.1| YME1-like 1 (S. cerevisiae) [Rattus norvegicus]
          Length = 715

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|149245880|ref|XP_001527410.1| cell division protein ftsH [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449804|gb|EDK44060.1| cell division protein ftsH [Lodderomyces elongisporus NRRL YB-4239]
          Length = 496

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ 
Sbjct: 7   LQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 60

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 61  FVGVGASR-VRDLFKKA 76


>gi|89898058|ref|YP_515168.1| cell division related ATP-dependent zinc proteinase Clp
           [Chlamydophila felis Fe/C-56]
 gi|89331430|dbj|BAE81023.1| cell division related ATP-dependent zinc proteinase Clp
           [Chlamydophila felis Fe/C-56]
          Length = 913

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|85709475|ref|ZP_01040540.1| ATP-dependent Zn protease [Erythrobacter sp. NAP1]
 gi|85688185|gb|EAQ28189.1| ATP-dependent Zn protease [Erythrobacter sp. NAP1]
          Length = 654

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 202 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 258


>gi|255580321|ref|XP_002530989.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
 gi|223529441|gb|EEF31401.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
          Length = 833

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E  
Sbjct: 365 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 419

Query: 92  IGYVGRNVEQIIRDLVDVAINIV 114
           +G     V  + ++    A +IV
Sbjct: 420 VGVGPSRVRSLFQEARQCAPSIV 442


>gi|254501449|ref|ZP_05113600.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222437520|gb|EEE44199.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|209965091|ref|YP_002298006.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
 gi|209958557|gb|ACI99193.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|162419672|ref|YP_001608280.1| ATP-dependent metalloprotease [Yersinia pestis Angola]
 gi|162352487|gb|ABX86435.1| ATP-dependent metallopeptidase HflB [Yersinia pestis Angola]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|163758786|ref|ZP_02165873.1| probable metalloprotease transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162284076|gb|EDQ34360.1| probable metalloprotease transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|148556033|ref|YP_001263615.1| ATPase [Sphingomonas wittichii RW1]
 gi|148501223|gb|ABQ69477.1| ATPase AAA-2 domain protein [Sphingomonas wittichii RW1]
          Length = 859

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 566 ELGKRVIGQKDAIEAVSRAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 620 AGFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|110597796|ref|ZP_01386079.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340521|gb|EAT59004.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFEQA 298


>gi|87198102|ref|YP_495359.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133783|gb|ABD24525.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 251


>gi|52138617|ref|NP_446134.2| ATP-dependent zinc metalloprotease YME1L1 [Rattus norvegicus]
 gi|51859432|gb|AAH81751.1| YME1-like 1 (S. cerevisiae) [Rattus norvegicus]
          Length = 715

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|46397076|sp|Q925S8|YMEL1_RAT RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=Meg-4; AltName: Full=YME1-like protein 1
 gi|14248497|gb|AAK57557.1|AF151784_1 ATP-dependent metalloprotease FtsH1 homolog [Rattus norvegicus]
          Length = 715

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|260948508|ref|XP_002618551.1| hypothetical protein CLUG_02010 [Clavispora lusitaniae ATCC 42720]
 gi|238848423|gb|EEQ37887.1| hypothetical protein CLUG_02010 [Clavispora lusitaniae ATCC 42720]
          Length = 790

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 328 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 384


>gi|94265726|ref|ZP_01289463.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
 gi|93453739|gb|EAT04115.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
          Length = 867

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ++A  AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R L
Sbjct: 570 ELSKRVVGQREAISAVANAVR-RAR-----AGLQDPNRPLGSFIFMGPTGVGKTELARSL 623

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 624 AAFLFDTEKAMIRLDMSEFMEKHSVAR 650


>gi|25308028|pir||E84974 cell division protein ftsh [imported] - Buchnera sp. (strain APS)
 gi|10039051|dbj|BAB13085.1| cell division protein ftsh [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 596

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 169 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 223


>gi|89893184|ref|YP_516671.1| hypothetical protein DSY0438 [Desulfitobacterium hafniense Y51]
 gi|219666457|ref|YP_002456892.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|89332632|dbj|BAE82227.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536717|gb|ACL18456.1| ATPase AAA-2 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 826

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ+DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 514 LHQRVVGQEDAVKAVSRAVR-RAR-----AGLKDPKRPVGSFIFLGPTGVGKTELARALA 567

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             L G     I+++++++ E   V R V
Sbjct: 568 EALFGEEDALIRIDMSEYMEKHAVSRLV 595


>gi|332833798|ref|XP_003312541.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 2 [Pan
           troglodytes]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 281 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 330


>gi|307944550|ref|ZP_07659890.1| cell division protease FtsH [Roseibium sp. TrichSKD4]
 gi|307772299|gb|EFO31520.1| cell division protease FtsH [Roseibium sp. TrichSKD4]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|308050590|ref|YP_003914156.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
 gi|307632780|gb|ADN77082.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR+  + Q+L   +     P  +L+VGP G GKT +++ +A  
Sbjct: 156 VAGCDEAKEEVAELVDYLRDPSKFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGE 210

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 211 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|302842074|ref|XP_002952581.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
           nagariensis]
 gi|300262220|gb|EFJ46428.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
           nagariensis]
          Length = 1909

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDV 109
           P+ +LL GP G GKTA++  +A   G PF+KV   +    G  G +   + Q+  +  D+
Sbjct: 424 PRGVLLHGPPGCGKTALANAIANECGVPFLKVSAPEIVS-GMSGESEAKLRQLFGEARDL 482

Query: 110 A--INIVRESRRDEV------REQASINAEERILDALV 139
           A  I  +  + +DE+      RE A    E RI+  ++
Sbjct: 483 APCIVFIASAGKDEIDAIFPKRETAQREMERRIVAQML 520


>gi|298242533|ref|ZP_06966340.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297555587|gb|EFH89451.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 616

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PK +LLVG  G GKT ISR +A  AG  F  V  ++F E+ +VG    + +RDL
Sbjct: 217 PKGVLLVGAPGTGKTLISRAVAGEAGVSFYSVSGSEFVEM-FVGVGAAR-VRDL 268


>gi|295098773|emb|CBK87862.1| membrane protease FtsH catalytic subunit [Eubacterium cylindroides
           T2-87]
          Length = 655

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+
Sbjct: 194 IPKGVLMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGTGASR-VRDM 246


>gi|260762398|ref|ZP_05874736.1| ATPase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672825|gb|EEX59646.1| ATPase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 14  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 70


>gi|253743444|gb|EES99838.1| 26S protease regulatory subunit 8 [Giardia intestinalis ATCC 50581]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MPK +LL G  G GK+A++R +A   G  FI+V  ++     IG   R V Q+ +  +  
Sbjct: 185 MPKGVLLYGAPGCGKSAVARAVAHHCGCTFIRVSGSELLSKYIGEGSRMVRQVFQMALKN 244

Query: 110 AINIV 114
           A  IV
Sbjct: 245 APAIV 249


>gi|253681680|ref|ZP_04862477.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
 gi|253561392|gb|EES90844.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 165 VAGQDEAKESLIEIVDFLHNPDKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 220 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFKQA 251


>gi|239996919|ref|ZP_04717443.1| ATP-dependent metalloprotease FtsH [Alteromonas macleodii ATCC
           27126]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 43  IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 99


>gi|238761762|ref|ZP_04622736.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
 gi|238699876|gb|EEP92619.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|215408551|emb|CAR31125.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408567|emb|CAR31133.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408573|emb|CAR31136.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408589|emb|CAR31144.1| HflB protein [Candidatus Phytoplasma pyri]
          Length = 176

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|39996282|ref|NP_952233.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983162|gb|AAR34556.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|298505295|gb|ADI84018.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 617

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT ++R +A  A   F+ +  ++F E+ +VG    + +RDL   A
Sbjct: 207 VPKGVLLVGPPGTGKTLLARAVAGEADVTFLSISASQFIEM-FVGVGAGR-VRDLFATA 263


>gi|22124596|ref|NP_668019.1| ATP-dependent metalloprotease [Yersinia pestis KIM 10]
 gi|45440435|ref|NP_991974.1| ATP-dependent metalloprotease [Yersinia pestis biovar Microtus str.
           91001]
 gi|165928181|ref|ZP_02224013.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937451|ref|ZP_02226014.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011345|ref|ZP_02232243.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214009|ref|ZP_02240044.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401354|ref|ZP_02306854.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420745|ref|ZP_02312498.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423286|ref|ZP_02315039.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025951|ref|YP_001722456.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis YPIII]
 gi|270489130|ref|ZP_06206204.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
 gi|21957399|gb|AAM84270.1|AE013670_7 integral membrane peptidase, cell division protein [Yersinia pestis
           KIM 10]
 gi|45435292|gb|AAS60851.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
 gi|165914556|gb|EDR33170.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919868|gb|EDR37169.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989729|gb|EDR42030.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204804|gb|EDR49284.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961551|gb|EDR57572.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049379|gb|EDR60787.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057456|gb|EDR67202.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752485|gb|ACA70003.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           YPIII]
 gi|270337634|gb|EFA48411.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|62185344|ref|YP_220129.1| putative cell division protein [Chlamydophila abortus S26/3]
 gi|62148411|emb|CAH64178.1| putative cell division protein [Chlamydophila abortus S26/3]
          Length = 913

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|323451377|gb|EGB07254.1| hypothetical protein AURANDRAFT_14060 [Aureococcus anophagefferens]
          Length = 221

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
            P+ +LL GP+G GKT ++R +A  A   F+    + F E+  VGR   + +RDL
Sbjct: 34  CPRGVLLTGPSGTGKTLLARAVADEAQCAFLSCSASAFVEL-LVGRGAAR-VRDL 86


>gi|317123796|ref|YP_004097908.1| ATPase AAA [Intrasporangium calvum DSM 43043]
 gi|315587884|gb|ADU47181.1| ATPase AAA-2 domain protein [Intrasporangium calvum DSM 43043]
          Length = 874

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + I+G  DA +A++ A+R R R     A L+D   P  + +
Sbjct: 500 FKLTEEESSRLLHMEDELHKRIVGMNDAVKALSQAIR-RTR-----AGLKDPRRPGGSFI 553

Query: 58  LVGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA  L G+    I++++++F+E   V R
Sbjct: 554 FAGPTGVGKTELAKTLAEFLFGSEDALIQLDMSEFSEKHTVSR 596


>gi|307354219|ref|YP_003895270.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
 gi|307157452|gb|ADN36832.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
          Length = 391

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I++ +A  A A FI++  ++     ++G    Q++RDL  +A
Sbjct: 173 PKGILLYGPPGTGKTLIAKAVANQANATFIRMSGSELVH-KFIGEGA-QMVRDLFLLA 228


>gi|306430635|emb|CBJ17064.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430637|emb|CBJ17065.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430639|emb|CBJ17066.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430641|emb|CBJ17067.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430651|emb|CBJ17072.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430653|emb|CBJ17073.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430655|emb|CBJ17074.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430661|emb|CBJ17077.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430663|emb|CBJ17078.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430675|emb|CBJ17084.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430677|emb|CBJ17085.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430681|emb|CBJ17087.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430683|emb|CBJ17088.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430685|emb|CBJ17089.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430687|emb|CBJ17090.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430691|emb|CBJ17092.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430693|emb|CBJ17093.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430695|emb|CBJ17094.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430733|emb|CBJ17113.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430741|emb|CBJ17117.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430743|emb|CBJ17118.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430753|emb|CBJ17123.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430757|emb|CBJ17125.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430759|emb|CBJ17126.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430761|emb|CBJ17127.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430765|emb|CBJ17129.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430773|emb|CBJ17133.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|296206359|ref|XP_002750181.1| PREDICTED: ATP-dependent metalloprotease YME1L1 isoform 2
           [Callithrix jacchus]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 281 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 330


>gi|294505366|ref|YP_003569428.1| cell division protein [Yersinia pestis Z176003]
 gi|294355825|gb|ADE66166.1| cell division protein [Yersinia pestis Z176003]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|254384533|ref|ZP_04999873.1| chaperone protein clpB [Streptomyces sp. Mg1]
 gi|194343418|gb|EDX24384.1| chaperone protein clpB [Streptomyces sp. Mg1]
          Length = 861

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQQ+A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 569 ELGRRLIGQQEAVRAVSDAVR-RTR-----AGIADPDRPTGSFLFLGPTGVGKTELAKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 623 ADFLFDDERAMVRIDMSEYSEKHSVARLV 651


>gi|195119171|ref|XP_002004105.1| GI19403 [Drosophila mojavensis]
 gi|193914680|gb|EDW13547.1| GI19403 [Drosophila mojavensis]
          Length = 376

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           QD + +V + +R+R     L  + +    P+ +LL GP G GKT I++  A+ AG  FI 
Sbjct: 107 QDLRESVVLPVRHR----DLFKESKLWQAPRGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162

Query: 84  VEVTKFTEIGY 94
           ++V   T+  Y
Sbjct: 163 LDVAILTDKWY 173


>gi|148709782|gb|EDL41728.1| ATPase family, AAA domain containing 1, isoform CRA_b [Mus
           musculus]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 141 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 182


>gi|146422531|ref|XP_001487202.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 807

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 344 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 400


>gi|111021885|ref|YP_704857.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
 gi|110821415|gb|ABG96699.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
          Length = 807

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL R +IGQ DA RA+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 500 RRLEDELHRRVIGQDDAVRAIARAVR-RSR-----TGMSDPDRPVGSFLFLGPTGVGKTE 553

Query: 69  ISRRL-ARLAG--APFIKVEVTKFTEIGYVGRNV 99
           +++ L A L G     +++++++F E   V R V
Sbjct: 554 LAKALAATLFGDENKMLRLDMSEFGERHTVSRLV 587


>gi|50303727|ref|XP_451808.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640940|emb|CAH02201.1| KLLA0B06094p [Kluyveromyces lactis]
          Length = 360

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ LA  +GA FI + ++   +  Y
Sbjct: 126 PKGVLLYGPPGCGKTMIAKALAHESGANFISIRMSSIMDKWY 167


>gi|33413746|gb|AAN17725.1| metalloprotease [Mus musculus]
          Length = 668

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|331268689|ref|YP_004395181.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329125239|gb|AEB75184.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 597

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 151 VAGQDEAKESLIEIVDFLHNPDKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 205

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 206 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFKQA 237


>gi|328776099|ref|XP_393770.4| PREDICTED: paraplegin-like [Apis mellifera]
          Length = 725

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92
           L+N  R  +L A      +PK  LL+GP G GKT +++ +A  +  PF+ +  ++FTE I
Sbjct: 311 LKNPERYTKLGAK-----VPKGALLLGPPGCGKTLLAKAVATESNVPFLSMNGSEFTELI 365

Query: 93  GYVG 96
           G +G
Sbjct: 366 GGLG 369


>gi|325295222|ref|YP_004281736.1| ATP-dependent metalloprotease FtsH [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065670|gb|ADY73677.1| ATP-dependent metalloprotease FtsH [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 626

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + QQL   +     PK +LL G  G GKT +++ +A  A  PF+ V  ++F E+ 
Sbjct: 176 LKNPKKFQQLGGRI-----PKGVLLAGAPGTGKTLLAKAIAGEANVPFLSVSGSEFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 230 FVGVGASR-VRDLFEQA 245


>gi|319786186|ref|YP_004145661.1| ATP-dependent chaperone ClpB [Pseudoxanthomonas suwonensis 11-1]
 gi|317464698|gb|ADV26430.1| ATP-dependent chaperone ClpB [Pseudoxanthomonas suwonensis 11-1]
          Length = 861

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            +L R ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QQLHRRVVGQDEAIRAVSDAVR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKG 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    +++++++F E   V R
Sbjct: 618 LAEFLFDSAEAMVRIDMSEFMEKHSVAR 645


>gi|317472355|ref|ZP_07931682.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
 gi|316900197|gb|EFV22184.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQQ+AK ++      L +  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQQEAKESLTEMVDFLHHPDKYLKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 239 ANVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 270


>gi|315122701|ref|YP_004063190.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496103|gb|ADR52702.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 855

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  E+ + ++GQ  A  +V+ ALR R+R     A L+D   P  + + +GPTGVGKT + 
Sbjct: 562 IEEEISKSVVGQSAAIESVSHALR-RFR-----AGLQDPRRPMGSFMFLGPTGVGKTELV 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LARL        I+++++++ E   V R
Sbjct: 616 KSLARLLFDDENSMIRIDMSEYMEKHSVSR 645


>gi|297300681|ref|XP_002805639.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 2
           [Macaca mulatta]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 281 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 330


>gi|255725824|ref|XP_002547838.1| hypothetical protein CTRG_02135 [Candida tropicalis MYA-3404]
 gi|240133762|gb|EER33317.1| hypothetical protein CTRG_02135 [Candida tropicalis MYA-3404]
          Length = 779

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 308 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFKTA 364


>gi|225849408|ref|YP_002729572.1| ATP-dependent metallopeptidase HflB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643912|gb|ACN98962.1| ATP-dependent metallopeptidase HflB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 632

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 186 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 241


>gi|215408587|emb|CAR31143.1| HflB protein [Candidatus Phytoplasma pyri]
          Length = 176

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    +I
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRI 109


>gi|212634067|ref|YP_002310592.1| peptidase M41, FtsH [Shewanella piezotolerans WP3]
 gi|212555551|gb|ACJ28005.1| Peptidase M41, FtsH [Shewanella piezotolerans WP3]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPTGVLLVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|78485157|ref|YP_391082.1| ATP-dependent metalloprotease FtsH [Thiomicrospira crunogena XCL-2]
 gi|78363443|gb|ABB41408.1| membrane protease FtsH catalytic subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 651

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q L  ++     P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 177 LRDPEKYQNLGGNI-----PRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM- 230

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 231 FVGVGASR-VRDMFEQA 246


>gi|238797558|ref|ZP_04641055.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
 gi|238718555|gb|EEQ10374.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
          Length = 651

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|332160073|ref|YP_004296650.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607367|emb|CBY28865.1| cell division protein FtsH [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664303|gb|ADZ40947.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862036|emb|CBX72202.1| cell division protease ftsH [Yersinia enterocolitica W22703]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|297539173|ref|YP_003674942.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
 gi|297258520|gb|ADI30365.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFENA 243


>gi|300774826|ref|ZP_07084689.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
 gi|300506641|gb|EFK37776.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
          Length = 673

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 220 IPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 272


>gi|195434160|ref|XP_002065071.1| GK14869 [Drosophila willistoni]
 gi|194161156|gb|EDW76057.1| GK14869 [Drosophila willistoni]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 173


>gi|169806503|ref|XP_001827996.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
 gi|161779136|gb|EDQ31161.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIG    K+A+   +     R  +   LR+   PK +LL GP G GKT I + +A    A
Sbjct: 147 IIGLNKVKQAIKEIIIWPMLRPDIFVGLRNP--PKGLLLFGPPGTGKTMIGKCIAAQVNA 204

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E++++ L +VA
Sbjct: 205 TFFSISASSLTS-KWVGEG-EKLVKALFEVA 233


>gi|119606477|gb|EAW86071.1| YME1-like 1 (S. cerevisiae), isoform CRA_c [Homo sapiens]
 gi|194388630|dbj|BAG60283.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 281 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 330


>gi|94496967|ref|ZP_01303541.1| ATP-dependent metalloprotease FtsH [Sphingomonas sp. SKA58]
 gi|94423643|gb|EAT08670.1| ATP-dependent metalloprotease FtsH [Sphingomonas sp. SKA58]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|89056478|ref|YP_511929.1| ATPase AAA-2 [Jannaschia sp. CCS1]
 gi|88866027|gb|ABD56904.1| ATPase AAA-2 [Jannaschia sp. CCS1]
          Length = 871

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ  A  AV+ A+R R R     A L+DE  P  + L +GPTGVGKT +++ L
Sbjct: 563 ELGKRVIGQHQAVSAVSRAVR-RAR-----AGLQDEGRPLGSFLFLGPTGVGKTELTKAL 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 617 AEYLFDDDQAMVRIDMSEFMEKHAVAR 643


>gi|78187991|ref|YP_378329.1| peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
 gi|78170190|gb|ABB27286.1| membrane protease FtsH catalytic subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 699

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 209 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 265


>gi|51594826|ref|YP_069017.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           32953]
 gi|108806050|ref|YP_649966.1| ATP-dependent metalloprotease [Yersinia pestis Antiqua]
 gi|108813406|ref|YP_649173.1| ATP-dependent metalloprotease [Yersinia pestis Nepal516]
 gi|145600798|ref|YP_001164874.1| ATP-dependent metalloprotease [Yersinia pestis Pestoides F]
 gi|153946925|ref|YP_001402556.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           31758]
 gi|153997279|ref|ZP_02022379.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|186893835|ref|YP_001870947.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis PB1/+]
 gi|218930516|ref|YP_002348391.1| ATP-dependent metalloprotease [Yersinia pestis CO92]
 gi|229839154|ref|ZP_04459313.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896643|ref|ZP_04511810.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|229899718|ref|ZP_04514859.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903880|ref|ZP_04518993.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|51588108|emb|CAH19714.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777054|gb|ABG19573.1| membrane protease FtsH catalytic subunit [Yersinia pestis Nepal516]
 gi|108777963|gb|ABG12021.1| membrane protease FtsH catalytic subunit [Yersinia pestis Antiqua]
 gi|115349127|emb|CAL22090.1| cell division protein [Yersinia pestis CO92]
 gi|145212494|gb|ABP41901.1| membrane protease FtsH catalytic subunit [Yersinia pestis Pestoides
           F]
 gi|149288916|gb|EDM38996.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|152958420|gb|ABS45881.1| ATP-dependent metallopeptidase HflB [Yersinia pseudotuberculosis IP
           31758]
 gi|186696861|gb|ACC87490.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679650|gb|EEO75753.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|229687210|gb|EEO79285.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695520|gb|EEO85567.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700421|gb|EEO88453.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|320013705|gb|ADV97276.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|332240524|ref|XP_003269437.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Nomascus leucogenys]
          Length = 723

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370


>gi|308189107|ref|YP_003933238.1| cell division protein ftsH [Pantoea vagans C9-1]
 gi|308059617|gb|ADO11789.1| cell division protein ftsH [Pantoea vagans C9-1]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKDEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|269115198|ref|YP_003302961.1| Cell division protein ftsH [Mycoplasma hominis]
 gi|268322823|emb|CAX37558.1| Cell division protein ftsH [Mycoplasma hominis ATCC 23114]
          Length = 739

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL GP G GKT I++  A  A  PF  +  + F E+ +VG   ++ +RD+   A
Sbjct: 247 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEM-FVGLGAKR-VRDMFSEA 303


>gi|189219923|ref|YP_001940563.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943095|sp|B3DY14|FTSH2_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|189186781|gb|ACD83966.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGVLMVGPPGTGKTLLAKAIAGEADVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|153813279|ref|ZP_01965947.1| hypothetical protein RUMOBE_03696 [Ruminococcus obeum ATCC 29174]
 gi|149830692|gb|EDM85783.1| hypothetical protein RUMOBE_03696 [Ruminococcus obeum ATCC 29174]
          Length = 708

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A +AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 401 ELHKRVIGQEEAVKAVAQAVK-RGR-----VGLKDPNRPIGSFLFLGPTGVGKTELSKAL 454

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A     +    I+V+++++ E            GYVG
Sbjct: 455 AEAVFGSEQAMIRVDMSEYMEKHSVSKMIGSPPGYVG 491


>gi|73996065|ref|XP_534778.2| PREDICTED: similar to ATPase family, AAA domain containing 1 [Canis
           familiaris]
          Length = 418

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 183 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 224


>gi|21282209|ref|NP_645297.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912852|ref|ZP_07130294.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81762804|sp|Q8NXY8|CLPC_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|21203645|dbj|BAB94345.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885956|gb|EFK81159.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 818

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTE-----------IGYVGRN 98
                     I+V++++F E           +GYVG +
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVGHD 597


>gi|297618415|ref|YP_003703574.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297146252|gb|ADI03009.1| ATPase AAA-2 domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 830

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 529 LHQRVIGQDEAVKAVAQAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 582

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             L G+    I+++++++ E   V R +
Sbjct: 583 EALFGSEEALIRLDMSEYMEKHAVARMI 610


>gi|291336465|gb|ADD96019.1| ATP dependent Clp protease ATP binding subunit ClpA [uncultured
           organism MedDCM-OCT-S04-C138]
          Length = 535

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV-GPTGVGKTAISRRL 73
           +L R I GQ +A   V  A+R         A L   L P  + L  GPTGVGKT ++R++
Sbjct: 245 DLRRVIYGQDEAISRVVEAIRVSR------AGLGQPLRPIGVFLFSGPTGVGKTELARQI 298

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A   G  FI+ ++++++E   V R
Sbjct: 299 AETLGIEFIRFDMSEYSEPHTVSR 322


>gi|266622975|ref|ZP_06115910.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288865269|gb|EFC97567.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 700

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 174 RDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 GEAKVPFYSLSGSDFVEM-FVGVGASR-VRDLFKQA 262


>gi|172041381|ref|YP_001801095.1| cell division protein [Corynebacterium urealyticum DSM 7109]
 gi|171852685|emb|CAQ05661.1| cell division protein [Corynebacterium urealyticum DSM 7109]
          Length = 837

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  +G PF  +  + F E+ +VG    + +RDL   A
Sbjct: 203 IPRGVLLYGPPGTGKTLLARAVAGESGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 259


>gi|168026657|ref|XP_001765848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683025|gb|EDQ69439.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 387

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 141 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 195

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 196 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|157368730|ref|YP_001476719.1| ATP-dependent metalloprotease [Serratia proteamaculans 568]
 gi|157320494|gb|ABV39591.1| ATP-dependent metalloprotease FtsH [Serratia proteamaculans 568]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|149238988|ref|XP_001525370.1| heat shock protein 104 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450863|gb|EDK45119.1| heat shock protein 104 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 908

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           SEL + ++GQ +A +A+A A+R   RR    + L D   P + L +G TG GKT ++++L
Sbjct: 573 SELSKEVVGQGEAVKAIANAVR--LRR----SGLSDPNQPPSFLFLGSTGTGKTVLAKKL 626

Query: 74  ARLAGA---PFIKVEVTKFTE 91
           A    A      +++ ++ TE
Sbjct: 627 AGFLFADERAMTRIDCSELTE 647


>gi|134097027|ref|YP_001102688.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909650|emb|CAL99762.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 853

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 509 ELHKRIIGQDDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 562

Query: 74  ARL 76
           A  
Sbjct: 563 AEF 565


>gi|28952053|ref|NP_240199.2| cell division protein FtsH [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|20138164|sp|P57462|FTSH_BUCAI RecName: Full=ATP-dependent zinc metalloprotease FtsH
          Length = 611

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 238


>gi|319399727|gb|EFV87976.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
           epidermidis FRI909]
          Length = 817

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHKRVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|296118950|ref|ZP_06837523.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968048|gb|EFG81300.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 905

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A +AV+ A+R R R     A L+D   P  + +
Sbjct: 512 LKLTEKESSRLLNMEEELHKRIIGQNEAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 565

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 566 FAGPSGVGKTELSKALA 582


>gi|238755150|ref|ZP_04616496.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
 gi|238706597|gb|EEP98968.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|238757570|ref|ZP_04618755.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
 gi|238704332|gb|EEP96864.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|218134797|ref|ZP_03463601.1| hypothetical protein BACPEC_02700 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990182|gb|EEC56193.1| hypothetical protein BACPEC_02700 [Bacteroides pectinophilus ATCC
           43243]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ++L G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 198 IPKGVILTGAPGTGKTMLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDDA 254


>gi|56478385|ref|YP_159974.1| cell division protein ftsH-like protein [Aromatoleum aromaticum
           EbN1]
 gi|56314428|emb|CAI09073.1| cell division protein ftsH homolog [Aromatoleum aromaticum EbN1]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 20/99 (20%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--------PKNILLVGPTGVGKTAISR 71
           ++G  DAK ++          QQ+ A +RD           P+ +LL GP G GKT ++R
Sbjct: 187 VVGASDAKTSL----------QQVTAFMRDPQKYLALGAKPPRGVLLEGPPGTGKTLLAR 236

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            LA    A FI V+ + F+ + Y G+ + + +R+L   A
Sbjct: 237 ALAGECKANFIAVDGSHFSSMFY-GQGIAK-VRELFATA 273


>gi|7305635|ref|NP_038799.1| ATP-dependent zinc metalloprotease YME1L1 [Mus musculus]
 gi|46397096|sp|O88967|YMEL1_MOUSE RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=YME1-like protein 1
 gi|3600100|gb|AAC35558.1| ATP-dependent metalloprotease FtsH1 [Mus musculus]
 gi|13938024|gb|AAH07128.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|26347839|dbj|BAC37568.1| unnamed protein product [Mus musculus]
 gi|33413744|gb|AAN17724.1| metalloprotease [Mus musculus]
 gi|123232014|emb|CAM19538.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|123232763|emb|CAM25970.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|148676204|gb|EDL08151.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
          Length = 715

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362


>gi|103487872|ref|YP_617433.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98977949|gb|ABF54100.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 859

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A RAV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LTQRVIGQDEAVRAVSTAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R         ++++++++ E   V R V
Sbjct: 621 RFLFDDDNAMVRIDMSEYMEKHSVARLV 648


>gi|134291697|ref|YP_001115466.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4]
 gi|134134886|gb|ABO59211.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 635

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 10/78 (12%)

Query: 41  QQLPADLRDE--------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           QQ+ A LRD          +PK +L+VG  G GKT ++R +A  A  PF  +  + F E+
Sbjct: 182 QQIVAFLRDPDRYQRLGGKIPKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM 241

Query: 93  GYVGRNVEQIIRDLVDVA 110
            +VG    + +RDL + A
Sbjct: 242 -FVGVGAAR-VRDLFEQA 257


>gi|311087277|gb|ADP67357.1| cell division protein FtsH [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 238


>gi|219681739|ref|YP_002468125.1| cell division protein FtsH [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471439|ref|ZP_05635438.1| cell division protein FtsH [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624582|gb|ACL30737.1| cell division protein FtsH [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 238


>gi|215408571|emb|CAR31135.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|218961143|ref|YP_001740918.1| Cell division protein FtsH, ATP-dependent zinc protease [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729800|emb|CAO80712.1| Cell division protein FtsH, ATP-dependent zinc protease [Candidatus
           Cloacamonas acidaminovorans]
          Length = 744

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT +++ ++  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 277 IPRGVLLVGQPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 333


>gi|118594569|ref|ZP_01551916.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
 gi|118440347|gb|EAV46974.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFYSISGSDFVEM-FVGVGAAR-VRDMFEQA 244


>gi|90415921|ref|ZP_01223854.1| hypothetical protein GB2207_01772 [marine gamma proteobacterium
           HTCC2207]
 gi|90332295|gb|EAS47492.1| hypothetical protein GB2207_01772 [marine gamma proteobacterium
           HTCC2207]
          Length = 758

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A LR+   P  + L  GPTGVGKT +SR+LA + G   ++ +++++ E            
Sbjct: 484 AGLREGTKPIGSFLFAGPTGVGKTEVSRQLANILGVNLMRFDMSEYMERHTVSRLIGAPP 543

Query: 93  GYVGRNVEQIIRDLVD 108
           GYVG +   ++ D V+
Sbjct: 544 GYVGYDQGGLLTDAVN 559


>gi|85706748|ref|ZP_01037840.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. 217]
 gi|85668806|gb|EAQ23675.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. 217]
          Length = 872

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 565 LHRRVIGQNTAVKAVANAVR-RAR-----AGLNDEGRPLGSFLFLGPTGVGKTELTKAVA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVSR 644


>gi|194426673|ref|ZP_03059227.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B171]
 gi|194415412|gb|EDX31680.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B171]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDVAINIVRES----RRDEVREQASINAEERILDALVGKT 142
           ++     L+D+   +   S    RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPLQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|326386205|ref|ZP_08207829.1| membrane protease FtsH catalytic subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209430|gb|EGD60223.1| membrane protease FtsH catalytic subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 251


>gi|315185601|gb|EFU19370.1| ATP-dependent chaperone ClpB [Spirochaeta thermophila DSM 6578]
          Length = 870

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 9/59 (15%)

Query: 18  RYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRLA 74
           R +IGQ++A RAVA A+R NR       + L D   P  + L +GPTGVGKT ++R LA
Sbjct: 575 RRVIGQEEAIRAVADAIRRNR-------SGLSDPRRPMGVFLFLGPTGVGKTELARTLA 626


>gi|307109320|gb|EFN57558.1| hypothetical protein CHLNCDRAFT_34770 [Chlorella variabilis]
          Length = 524

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT ++R +A  AG PF     ++F E+ +VG
Sbjct: 63  LPKGVLLTGPPGTGKTLLARAVAGEAGVPFFYKAGSEFDEM-FVG 106


>gi|238787588|ref|ZP_04631386.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
 gi|238724375|gb|EEQ16017.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|238783521|ref|ZP_04627543.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
 gi|238715576|gb|EEQ07566.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
          Length = 619

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|225028027|ref|ZP_03717219.1| hypothetical protein EUBHAL_02296 [Eubacterium hallii DSM 3353]
 gi|224954627|gb|EEG35836.1| hypothetical protein EUBHAL_02296 [Eubacterium hallii DSM 3353]
          Length = 677

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 181 VAGQDEAKESLTEMVDFLHNPGKYIEIGARL-----PKGALLVGPPGTGKTLLAKAVAGE 235

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 236 ANVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 267


>gi|167748114|ref|ZP_02420241.1| hypothetical protein ANACAC_02858 [Anaerostipes caccae DSM 14662]
 gi|167652106|gb|EDR96235.1| hypothetical protein ANACAC_02858 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQQ+AK ++      L +  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQQEAKESLTEMVDFLHHPDKYLKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 239 ANVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 270


>gi|146282646|ref|YP_001172799.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri A1501]
 gi|145570851|gb|ABP79957.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri A1501]
 gi|327480904|gb|AEA84214.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri DSM 4166]
          Length = 756

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E++  L+R     + GQ DA  ++A A++         A L+    P  + L  GPT
Sbjct: 448 SDKELLRNLERDLKLTVFGQDDAIDSLATAIKLSR------AGLKAPDKPVGSFLFAGPT 501

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT  +R+LAR  G   I+ +++++ E   V R
Sbjct: 502 GVGKTEAARQLARALGVELIRFDMSEYMERHTVSR 536


>gi|157137618|ref|XP_001664033.1| paraplegin [Aedes aegypti]
 gi|108869668|gb|EAT33893.1| paraplegin [Aedes aegypti]
          Length = 766

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK+ V      L+   R Q+L A +     PK  LL+GP G GKT +++ +A  
Sbjct: 297 VAGLQEAKQEVMEFVDYLKAPERYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 351

Query: 77  AGAPFIKVEVTKFTE-IGYVG 96
           A  PF+ +  ++F E IG +G
Sbjct: 352 AAVPFLSMNGSEFIEMIGGLG 372


>gi|15618906|ref|NP_225192.1| ATP-dependent zinc protease [Chlamydophila pneumoniae CWL029]
 gi|15836529|ref|NP_301053.1| ATP-dependent zinc protease [Chlamydophila pneumoniae J138]
 gi|16752029|ref|NP_445395.1| cell division protein FtsH, putative [Chlamydophila pneumoniae
           AR39]
 gi|33242367|ref|NP_877308.1| hypothetical protein CpB1036 [Chlamydophila pneumoniae TW-183]
 gi|4377327|gb|AAD19135.1| ATP-dependent zinc protease [Chlamydophila pneumoniae CWL029]
 gi|7189768|gb|AAF38646.1| cell division protein FtsH, putative [Chlamydophila pneumoniae
           AR39]
 gi|8979371|dbj|BAA99205.1| ATP-dependent zinc protease [Chlamydophila pneumoniae J138]
 gi|33236878|gb|AAP98965.1| FtsH [Chlamydophila pneumoniae TW-183]
 gi|269302799|gb|ACZ32899.1| ATP-dependent metallopeptidase HflB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 910

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 459 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 515


>gi|145220308|ref|YP_001131017.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206472|gb|ABP37515.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeovibrioides DSM
           265]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFEQA 298


>gi|328542548|ref|YP_004302657.1| Cell division protease FtsH-like protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412294|gb|ADZ69357.1| Putative Cell division protease FtsH-like protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|317046735|ref|YP_004114383.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
 gi|316948352|gb|ADU67827.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|255536557|ref|YP_003096928.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
 gi|255342753|gb|ACU08866.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
          Length = 677

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 237 IPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 289


>gi|219682294|ref|YP_002468678.1| cell division protein FtsH [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219622027|gb|ACL30183.1| cell division protein FtsH [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086119|gb|ADP66201.1| cell division protein FtsH [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086692|gb|ADP66773.1| cell division protein FtsH [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 238


>gi|167770555|ref|ZP_02442608.1| hypothetical protein ANACOL_01901 [Anaerotruncus colihominis DSM
           17241]
 gi|167667150|gb|EDS11280.1| hypothetical protein ANACOL_01901 [Anaerotruncus colihominis DSM
           17241]
          Length = 772

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL--- 76
           IIGQ +A   VA A+R    R Q+ A  R    P + + VGPTGVGKT + + L++    
Sbjct: 483 IIGQDEAVSLVAAAVRRS--RVQISARRR----PASFIFVGPTGVGKTELVKVLSKELFD 536

Query: 77  AGAPFIKVEVTKFTEIGYVGRNV 99
           +  P I++++++F E   V R V
Sbjct: 537 SADPLIRLDMSEFMEKHTVSRLV 559


>gi|123440807|ref|YP_001004798.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087768|emb|CAL10554.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|313843988|ref|YP_004061651.1| hypothetical protein OlV1_018c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599373|gb|ADQ91395.1| hypothetical protein OlV1_018c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 586

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL G  G GKT ++R +A  +  PFI+     F E+ +VG   ++ +RDL +VA
Sbjct: 176 IPRGALLAGKPGTGKTLLARAIAGESNVPFIQCSAANFVEM-FVGVGAKR-VRDLFEVA 232


>gi|306430679|emb|CBJ17086.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTFLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|291616004|ref|YP_003518746.1| HflB [Pantoea ananatis LMG 20103]
 gi|291151034|gb|ADD75618.1| HflB [Pantoea ananatis LMG 20103]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|251809941|ref|ZP_04824414.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875025|ref|ZP_06283900.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis SK135]
 gi|251806484|gb|EES59141.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296353|gb|EFA88872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis SK135]
 gi|329729477|gb|EGG65880.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU144]
 gi|329734648|gb|EGG70955.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU028]
          Length = 817

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHKRVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|78187896|ref|YP_375939.1| ATPase [Chlorobium luteolum DSM 273]
 gi|78167798|gb|ABB24896.1| ATPase [Chlorobium luteolum DSM 273]
          Length = 441

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 7/64 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I SEL   +IGQ +A RAV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IESELHERVIGQDEAVRAVSEAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLA 74
           R LA
Sbjct: 189 RTLA 192


>gi|27467205|ref|NP_763842.1| endopeptidase [Staphylococcus epidermidis ATCC 12228]
 gi|57866102|ref|YP_187761.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus epidermidis RP62A]
 gi|242241856|ref|ZP_04796301.1| ClpB ATPase [Staphylococcus epidermidis W23144]
 gi|293367900|ref|ZP_06614538.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81675398|sp|Q5HRM8|CLPC_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81843102|sp|Q8CQ88|CLPC_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|27314747|gb|AAO03884.1|AE016744_287 endopeptidase [Staphylococcus epidermidis ATCC 12228]
 gi|57636760|gb|AAW53548.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus epidermidis RP62A]
 gi|242234634|gb|EES36946.1| ClpB ATPase [Staphylococcus epidermidis W23144]
 gi|291317929|gb|EFE58337.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329738043|gb|EGG74264.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU045]
          Length = 817

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHKRVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|27904833|ref|NP_777959.1| cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340080|sp|Q89AF2|FTSH_BUCBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|27904231|gb|AAO27064.1| Cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 610

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 238


>gi|326491845|dbj|BAJ98147.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511657|dbj|BAJ91973.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326513078|dbj|BAK03446.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326523821|dbj|BAJ93081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 811

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E  
Sbjct: 342 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFMSISGSDFMEMF 396

Query: 92  IGYVGRNVEQIIRDLVDVAINIV 114
           +G     V  + ++    A +IV
Sbjct: 397 VGVGPSRVRNLFQEARQCAPSIV 419


>gi|319425424|gb|ADV53498.1| ATP-dependent chaperone ClpB [Shewanella putrefaciens 200]
          Length = 857

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|292486829|ref|YP_003529699.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|291552246|emb|CBA19283.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|312170897|emb|CBX79156.1| cell division protein FtsH [Erwinia amylovora ATCC BAA-2158]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 228 FVGVGASR-VRDMFEQA 243


>gi|293393159|ref|ZP_06637474.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
 gi|291424305|gb|EFE97519.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|188532498|ref|YP_001906295.1| ATP-dependent metalloprotease [Erwinia tasmaniensis Et1/99]
 gi|188027540|emb|CAO95387.1| Cell division protease FtsH [Erwinia tasmaniensis Et1/99]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|326927547|ref|XP_003209953.1| PREDICTED: paraplegin-like [Meleagris gallopavo]
          Length = 752

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI- 92
           L+N  R  QL A +     PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+ 
Sbjct: 285 LKNPDRYLQLGAKV-----PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 339

Query: 93  -GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-------EERILDALV 139
            G     V  + R+    A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 340 GGLGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLL 394


>gi|325279234|ref|YP_004251776.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
 gi|324311043|gb|ADY31596.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
          Length = 668

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 239 IPKGALLVGPPGTGKTLMAKAMAGEANVPFFSMSGSDFVEM-FVGVGASR-VRDLFKQA 295


>gi|305682337|dbj|BAJ16256.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682343|dbj|BAJ16259.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682347|dbj|BAJ16261.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682349|dbj|BAJ16262.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682351|dbj|BAJ16263.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+               ++  I
Sbjct: 29  GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQEFIQI 88

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           +T ++LFI  GAF            Q        +KS +  D+  IL + E++
Sbjct: 89  DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEAD 141


>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
 gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
          Length = 405

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL DVA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVH-KFIGEGA-KLVRDLFDVA 238


>gi|195576292|ref|XP_002078010.1| GD22765 [Drosophila simulans]
 gi|194190019|gb|EDX03595.1| GD22765 [Drosophila simulans]
          Length = 523

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG + E++++ L  VA
Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 338


>gi|50290675|ref|XP_447770.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527081|emb|CAG60717.1| unnamed protein product [Candida glabrata]
          Length = 827

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN  R +++ A +     P+  +L GP G GKT +++  A  AG PF  V  ++F E+ 
Sbjct: 371 LRNPQRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM- 424

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 425 FVGVGAAR-VRDLFKTA 440


>gi|54307809|ref|YP_128829.1| putative cell division protein FtsH [Photobacterium profundum SS9]
 gi|81400133|sp|Q6LUJ8|FTSH_PHOPR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46912232|emb|CAG19027.1| putative cell division protein FtsH [Photobacterium profundum SS9]
          Length = 696

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 198 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 251

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 252 FVGVGASR-VRDMFEQA 267


>gi|300088291|ref|YP_003758813.1| ATPase AAA-2 domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528024|gb|ADJ26492.1| ATPase AAA-2 domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 843

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   +A A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 512 LHERIIGQEEAINTIAKAVR-RAR-----AGLKDPSRPIGNFIFLGPTGVGKTELARALA 565

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 566 QFMFGSEDSMVRIDMSEFMEKFAVSRLV 593


>gi|270265053|ref|ZP_06193316.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
 gi|270040987|gb|EFA14088.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|238750120|ref|ZP_04611623.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
 gi|238711664|gb|EEQ03879.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 188 FVGVGASR-VRDMFEQA 203


>gi|217976933|ref|YP_002361080.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocella
           silvestris BL2]
 gi|217502309|gb|ACK49718.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocella
           silvestris BL2]
          Length = 826

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 18/115 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L+R + GQ  A  A+  A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 467 LTQTLERVVYGQNAAISALTSAIKLAR------AGLRDGEKPIGSYLFSGPTGVGKTEVA 520

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           R+LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 521 RQLAVALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHCV 575


>gi|167766277|ref|ZP_02438330.1| hypothetical protein CLOSS21_00781 [Clostridium sp. SS2/1]
 gi|167711996|gb|EDS22575.1| hypothetical protein CLOSS21_00781 [Clostridium sp. SS2/1]
 gi|291559090|emb|CBL37890.1| ATPases with chaperone activity, ATP-binding subunit
           [butyrate-producing bacterium SSC/2]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL +++IGQ +A  AVA A++ R R       L+    P  + L +GPTGVGKT 
Sbjct: 508 RHLEKELHKHVIGQDEAVNAVAKAVK-RSR-----VGLKSPNRPIGSFLFLGPTGVGKTE 561

Query: 69  ISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96
           +S+ LA+ L G     I+V+++++ E            GYVG
Sbjct: 562 LSKTLAKALFGREEDLIRVDMSEYMEKHSVSKIIGSPPGYVG 603


>gi|327313952|ref|YP_004329389.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
 gi|326944304|gb|AEA20189.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 213 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVG 256


>gi|241896601|ref|ZP_04783897.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
 gi|241870082|gb|EER73833.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 283


>gi|239929743|ref|ZP_04686696.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291438069|ref|ZP_06577459.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291340964|gb|EFE67920.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
          Length = 841

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQDDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|254567361|ref|XP_002490791.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|238030587|emb|CAY68511.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|328351173|emb|CCA37573.1| AFG3 family protein [Pichia pastoris CBS 7435]
          Length = 839

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT +++  A  AG PF  V  ++F E+ 
Sbjct: 381 LKNPAKYERLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFYSVSGSEFVEM- 434

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 435 FVGVGASR-VRDLFKTA 450


>gi|229824539|ref|ZP_04450608.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
 gi|229785910|gb|EEP22024.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
          Length = 668

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 206 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFTMSGSEFVEM-FVGVGASR-VRDLFENA 262


>gi|54035760|sp|Q6LMY0|CLPB_PHOPR RecName: Full=Chaperone protein ClpB
          Length = 857

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSEDNMVRIDMSEFMEKHSVARLV 647


>gi|331236648|ref|XP_003330982.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309309972|gb|EFP86563.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 888

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  ++ GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 366 IPKGAMISGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGPSR-VRDLFATA 422


>gi|60302706|ref|NP_001012545.1| spastic paraplegia 7 [Gallus gallus]
 gi|60099097|emb|CAH65379.1| hypothetical protein RCJMB04_24l18 [Gallus gallus]
          Length = 768

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92
           L+N  R  QL A +     PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E I
Sbjct: 301 LKNPDRYLQLGAKV-----PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 355

Query: 93  GYVG-RNVEQIIRDLVDVAINIVRESRRDEVREQASINA-------EERILDALV 139
           G +G   V  + R+    A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 356 GGIGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLL 410


>gi|116747998|ref|YP_844685.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697062|gb|ABK16250.1| membrane protease FtsH catalytic subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 652

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLVGAPGTGKTLLAKAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|194335612|ref|YP_002017406.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|310946753|sp|B4SCV5|FTSH_PELPB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|194308089|gb|ACF42789.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 662

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFEQA 298


>gi|119774091|ref|YP_926831.1| vesicle-fusing ATPase [Shewanella amazonensis SB2B]
 gi|119766591|gb|ABL99161.1| membrane protease FtsH catalytic subunit [Shewanella amazonensis
           SB2B]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|319442426|ref|ZP_07991582.1| ATP-dependent Clp protease [Corynebacterium variabile DSM 44702]
          Length = 874

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL   IIGQ+DA +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 529 ELHERIIGQEDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 582

Query: 74  ARL 76
           A  
Sbjct: 583 AEF 585


>gi|307546734|ref|YP_003899213.1| ATP-dependent metalloprotease FtsH [Halomonas elongata DSM 2581]
 gi|307218758|emb|CBV44028.1| ATP-dependent metalloprotease FtsH [Halomonas elongata DSM 2581]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKSIAGEASVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|302826469|ref|XP_002994701.1| hypothetical protein SELMODRAFT_139024 [Selaginella moellendorffii]
 gi|300137107|gb|EFJ04233.1| hypothetical protein SELMODRAFT_139024 [Selaginella moellendorffii]
          Length = 368

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 122 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 176

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 177 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 204


>gi|195391800|ref|XP_002054548.1| GJ24517 [Drosophila virilis]
 gi|194152634|gb|EDW68068.1| GJ24517 [Drosophila virilis]
          Length = 384

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 140 KQEIREAVELPLTHAHLYKQIGID-----PPRGVLLYGPPGCGKTMLAKAVANQTTAAFI 194

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RDL  +A
Sbjct: 195 RVVGSEFVQ-KYLGEG-PRMVRDLFRLA 220


>gi|195342232|ref|XP_002037705.1| GM18154 [Drosophila sechellia]
 gi|194132555|gb|EDW54123.1| GM18154 [Drosophila sechellia]
          Length = 523

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG + E++++ L  VA
Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 338


>gi|260905554|ref|ZP_05913876.1| cell division protein [Brevibacterium linens BL2]
          Length = 724

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL G  G GKT +++ +A  AG PF  +  + F E+ YVG    + +RDL + A
Sbjct: 206 IPKGVLLYGQPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-YVGVGASR-VRDLFEQA 262


>gi|54310128|ref|YP_131148.1| putative clpB, ATPase with chaperone activity [Photobacterium
           profundum SS9]
 gi|46914567|emb|CAG21346.1| putative clpB, ATPases with chaperone activity [Photobacterium
           profundum SS9]
          Length = 861

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELHQRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 622

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 623 ANFMFDSEDNMVRIDMSEFMEKHSVARLV 651


>gi|32472252|ref|NP_865246.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|81662437|sp|Q7UUZ7|FTSH1_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|32443488|emb|CAD72930.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|327542051|gb|EGF28548.1| ATP-dependent zinc metalloprotease FtsH [Rhodopirellula baltica
           WH47]
          Length = 672

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF  V  ++F ++ +VG    + +RDL   A
Sbjct: 229 VPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQM-FVGVGASR-VRDLFKTA 285


>gi|120599936|ref|YP_964510.1| ATPase [Shewanella sp. W3-18-1]
 gi|146292128|ref|YP_001182552.1| ATPase [Shewanella putrefaciens CN-32]
 gi|120560029|gb|ABM25956.1| ATPase AAA-2 domain protein [Shewanella sp. W3-18-1]
 gi|145563818|gb|ABP74753.1| ATPase AAA-2 domain protein [Shewanella putrefaciens CN-32]
          Length = 857

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|158313819|ref|YP_001506327.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158109224|gb|ABW11421.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +L+VGP G GKT ++R +A  A  PF+ +  + F E+ +VG    + +RDL
Sbjct: 221 PRGVLMVGPPGTGKTLLARAVAGEAEVPFLSITGSGFVEM-FVGVGASR-VRDL 272


>gi|116513517|ref|YP_812423.1| ATP-dependent Zn protease [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092832|gb|ABJ57985.1| membrane protease FtsH catalytic subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 690

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 161 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEM- 214

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 215 FVGVGASR-VRDL 226


>gi|326427214|gb|EGD72784.1| hypothetical protein PTSG_04511 [Salpingoeca sp. ATCC 50818]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT ++R LA+  G  FI V  + F +  +
Sbjct: 119 PKGLLLFGPPGCGKTLLARALAKECGCCFINVRPSTFMDKWF 160


>gi|323450113|gb|EGB05996.1| hypothetical protein AURANDRAFT_4792 [Aureococcus anophagefferens]
          Length = 191

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I GQ++A  A   VA  +R+R R   + A       PK +LL GP G GKT +++ LAR 
Sbjct: 10  IGGQKEAVTALRDVADFVRDRERFAAVGA-----APPKGVLLHGPPGCGKTLLAKALARE 64

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           + A F     + F E+ Y G   +++
Sbjct: 65  SNATFFSASGSSFVEV-YSGLGAKRV 89


>gi|304396341|ref|ZP_07378222.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
 gi|304355850|gb|EFM20216.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 157 VAGCDEAKDEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|292900772|ref|YP_003540141.1| cell division protein [Erwinia amylovora ATCC 49946]
 gi|291200620|emb|CBJ47752.1| cell division protein [Erwinia amylovora ATCC 49946]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|258544934|ref|ZP_05705168.1| cell division protein FtsH [Cardiobacterium hominis ATCC 15826]
 gi|258519854|gb|EEV88713.1| cell division protein FtsH [Cardiobacterium hominis ATCC 15826]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGLLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEEA 246


>gi|253579478|ref|ZP_04856747.1| ATPase AAA-2 domain-containing protein [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848979|gb|EES76940.1| ATPase AAA-2 domain-containing protein [Ruminococcus sp.
           5_1_39BFAA]
          Length = 820

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 515 ELHKRVIGQNEAVKAVAQAVK-RGR-----VGLKDPNRPIGSFLFLGPTGVGKTELSKAL 568

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A     +    I+V+++++ E            GYVG
Sbjct: 569 AEAVFGSEQAMIRVDMSEYMEKHSVSKLIGSPPGYVG 605


>gi|254786020|ref|YP_003073449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Teredinibacter
           turnerae T7901]
 gi|237685501|gb|ACR12765.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Teredinibacter
           turnerae T7901]
          Length = 766

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 24/121 (19%)

Query: 4   TFNFSPREIVSELD----RYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNIL 57
           T   S +E++S+L+      + GQ++A  A++ A++ NR       A L +   P  + L
Sbjct: 446 TVTSSDKELLSKLEDTLRMTVFGQEEAISAISSAIKLNR-------AGLTNHDKPIGSFL 498

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDL 106
             GPTGVGKT + ++LA   G   ++ +++++ E            GYVG +   ++ D 
Sbjct: 499 FAGPTGVGKTELCKQLASAMGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA 558

Query: 107 V 107
           V
Sbjct: 559 V 559


>gi|224064564|ref|XP_002192889.1| PREDICTED: spastic paraplegia 7 [Taeniopygia guttata]
          Length = 777

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI- 92
           L+N  R  QL A +     PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+ 
Sbjct: 310 LKNPDRYLQLGAKV-----PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 364

Query: 93  -GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-------EERILDALV 139
            G     V  + R+    A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 365 GGLGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSGFANAEEEQTLNQLL 419


>gi|224179525|ref|YP_002601021.1| cell division protein [Monomastix sp. OKE-1]
 gi|217314568|gb|ACK36911.1| cell division protein [Monomastix sp. OKE-1]
          Length = 692

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV---EVTKFTEIG 93
             PK  L VGP G GKT +++ +A++A  PFI V   E+ K  EIG
Sbjct: 367 FAPKGYLFVGPPGTGKTLLAQEIAQIAKVPFICVSASEIQKQIEIG 412


>gi|162456450|ref|YP_001618817.1| ABC transporter ATPase [Sorangium cellulosum 'So ce 56']
 gi|161167032|emb|CAN98337.1| ATPase with chaperone activity, two ATP-bindingdomains [Sorangium
           cellulosum 'So ce 56']
          Length = 869

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 7/58 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           ++GQ+DA RAV+ A+R R R     A L DE  P  + L +GPTGVGKT ++R LA +
Sbjct: 572 VVGQEDALRAVSNAIR-RSR-----AGLGDERRPIGSFLFLGPTGVGKTELARALAEI 623


>gi|149370159|ref|ZP_01890010.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
 gi|149356650|gb|EDM45206.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
          Length = 654

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 235 IPKGALLVGPPGTGKTLLARAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 291


>gi|115445841|ref|NP_001046700.1| Os02g0325100 [Oryza sativa Japonica Group]
 gi|46390257|dbj|BAD15686.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit3 [Oryza sativa Japonica Group]
 gi|113536231|dbj|BAF08614.1| Os02g0325100 [Oryza sativa Japonica Group]
 gi|215701090|dbj|BAG92514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 173 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 227

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 228 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 255


>gi|329297290|ref|ZP_08254626.1| ATP-dependent metalloprotease [Plautia stali symbiont]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|329910111|ref|ZP_08275237.1| Cell division protein FtsH [Oxalobacteraceae bacterium IMCC9480]
 gi|327546264|gb|EGF31295.1| Cell division protein FtsH [Oxalobacteraceae bacterium IMCC9480]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFENA 245


>gi|116750618|ref|YP_847305.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|310946766|sp|A0LN68|FTSH_SYNFM RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116699682|gb|ABK18870.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophobacter fumaroxidans MPOB]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 219 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFGQA 275


>gi|311277848|ref|YP_003940079.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
 gi|308747043|gb|ADO46795.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|309808298|ref|ZP_07702204.1| hemolysin B [Lactobacillus iners LactinV 01V1-a]
 gi|308168445|gb|EFO70557.1| hemolysin B [Lactobacillus iners LactinV 01V1-a]
          Length = 546

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 248 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 299

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 300 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 351

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 352 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 410

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ D + ++S
Sbjct: 411 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFDPLSKES 458

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 459 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 491


>gi|300718584|ref|YP_003743387.1| cell division protease [Erwinia billingiae Eb661]
 gi|299064420|emb|CAX61540.1| Cell division protease [Erwinia billingiae Eb661]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKDEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|269216263|ref|ZP_06160117.1| ATP-dependent metalloprotease FtsH [Slackia exigua ATCC 700122]
 gi|269130522|gb|EEZ61600.1| ATP-dependent metalloprotease FtsH [Slackia exigua ATCC 700122]
          Length = 711

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +P+  LLVGP G GKT ++R +A  A  PF  +  ++F E  +G     V  +     D 
Sbjct: 230 IPRGCLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEMFVGVGASRVRSLFEQAKDA 289

Query: 110 AINIV 114
           A  I+
Sbjct: 290 APAII 294


>gi|262367194|gb|ACY63751.1| cell division protein [Yersinia pestis D182038]
          Length = 355

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 147 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 203


>gi|227505957|ref|ZP_03936006.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium striatum ATCC 6940]
 gi|227197479|gb|EEI77527.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium striatum ATCC 6940]
          Length = 904

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A +AV+ A+R R R     A L+D   P  + +
Sbjct: 515 LKLTEKESSRLLHMEDELHKRIIGQDEAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 568

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 569 FAGPSGVGKTELSKSLA 585


>gi|259907036|ref|YP_002647392.1| ATP-dependent metalloprotease [Erwinia pyrifoliae Ep1/96]
 gi|224962658|emb|CAX54113.1| Cell division protease FtsH [Erwinia pyrifoliae Ep1/96]
 gi|283476832|emb|CAY72670.1| cell division protein FtsH [Erwinia pyrifoliae DSM 12163]
 gi|310766248|gb|ADP11198.1| ATP-dependent metalloprotease [Erwinia sp. Ejp617]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|223995685|ref|XP_002287516.1| metalloprotease [Thalassiosira pseudonana CCMP1335]
 gi|220976632|gb|EED94959.1| metalloprotease [Thalassiosira pseudonana CCMP1335]
          Length = 581

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ++L GP G GKT +++ +A  AG PFI +  ++F E+ +VG    + +RD+   A
Sbjct: 162 IPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVGASR-VRDVFSQA 218


>gi|219110927|ref|XP_002177215.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411750|gb|EEC51678.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 673

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ++L GP G GKT +++ +A  AG PFI +  ++F E+ +VG    + +RD+   A
Sbjct: 227 IPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVGASR-VRDIFSQA 283


>gi|212639808|ref|YP_002316328.1| ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus
           WK1]
 gi|212561288|gb|ACJ34343.1| ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus
           WK1]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A R +A A+R R R     A L+ +  P  + L VGPTGVGKT +S+ LA
Sbjct: 442 LAKKVIGQEEAVRKIAKAIR-RSR-----AGLKAKNRPIGSFLFVGPTGVGKTELSKTLA 495

Query: 75  -RLAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            +L G+    I+++++++ E   V +        L+      V      ++ E+   N  
Sbjct: 496 EQLFGSTDAMIRLDMSEYMEKHAVSK--------LIGAPPGYVGHEEAGQLTEKVRRNPY 547

Query: 132 ERI-LDALVGKTATSNTREVFRKKLRDGEISDKE 164
             I LD +  + A  + + +F + L DG ++D +
Sbjct: 548 SIILLDEM--EKAHPDVQHMFLQILEDGRLTDSQ 579


>gi|116515167|ref|YP_802796.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257021|gb|ABJ90703.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 600

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEANVPFFTISGSDFVEM-FVG 227


>gi|85058349|ref|YP_454051.1| ATP-dependent metalloprotease [Sodalis glossinidius str.
           'morsitans']
 gi|84778869|dbj|BAE73646.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 643

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|150017878|ref|YP_001310132.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149904343|gb|ABR35176.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 627

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   + +   L    R  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 182 VAGQEEAKESLKEIVDFLHKPERYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 237 AKVPFFSLSGSGFVEM-FVGVGASR-VRDL 264


>gi|332977758|gb|EGK14518.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. 1501(2011)]
          Length = 635

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPRGILMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|325853892|ref|ZP_08171408.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
 gi|325484229|gb|EGC87159.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 224 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVG 267


>gi|325190529|emb|CCA25028.1| 26S protease regulatory subunit 6B putative [Albugo laibachii Nc14]
          Length = 405

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ IL+ GP G GKT +++ +A    A 
Sbjct: 159 VQKQEVREAVELPLTHTELYKQIGVD-----PPRGILMYGPPGTGKTMLAKAVANATTAS 213

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 214 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 241


>gi|325270324|ref|ZP_08136929.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
 gi|324987268|gb|EGC19246.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LL+GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 224 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVG 267


>gi|304560005|gb|ADM42669.1| ClpB [Edwardsiella tarda FL6-60]
          Length = 809

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 517 ELHRRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 570

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 571 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 599


>gi|303327022|ref|ZP_07357464.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863010|gb|EFL85942.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           sp. 3_1_syn3]
          Length = 771

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 15  ELDRYIIGQQDA-KRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
           +L   + GQ +A +  V   LR R       A L  E  P    L  GPTGVGKT ++R 
Sbjct: 489 DLKHLVFGQGEAIELTVRAILRAR-------AGLGQEQRPAGAFLFYGPTGVGKTEVARS 541

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA+L G  F++ +++++ E   V R
Sbjct: 542 LAKLMGVEFLRYDMSEYMEKHSVSR 566


>gi|260912679|ref|ZP_05919165.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
 gi|260633057|gb|EEX51222.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
          Length = 855

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 564 ELHKRVIGQHEAIEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 617

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 618 ANFLFDDENAMVRIDMSEFMEKHSVSRLV 646


>gi|222873582|gb|EEF10713.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R Q+L   +     PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 1   LKHRQRFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM- 54

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 55  FVGVGASR-VRDMFE 68


>gi|219128993|ref|XP_002184684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403793|gb|EEC43743.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 590

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 146 IPKGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEM-FVGVGPSR-VRDLFSEA 202


>gi|206578792|ref|YP_002236410.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288933394|ref|YP_003437453.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
 gi|206567850|gb|ACI09626.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288888123|gb|ADC56441.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|193587013|ref|XP_001943645.1| PREDICTED: ATPase family AAA domain-containing protein 1-B-like
           [Acyrthosiphon pisum]
          Length = 359

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  AR AG  F+ ++V+  T+  Y
Sbjct: 119 PKGVLLHGPPGCGKTMIAKATAREAGMNFLYLDVSLLTDKWY 160


>gi|156935700|ref|YP_001439616.1| ATP-dependent metalloprotease [Cronobacter sakazakii ATCC BAA-894]
 gi|156533954|gb|ABU78780.1| hypothetical protein ESA_03569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|78187576|ref|YP_375619.1| peptidase M41, FtsH [Chlorobium luteolum DSM 273]
 gi|78167478|gb|ABB24576.1| Peptidase M41, FtsH [Chlorobium luteolum DSM 273]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 212 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFEQA 268


>gi|320353056|ref|YP_004194395.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121558|gb|ADW17104.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLAGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238


>gi|295097664|emb|CBK86754.1| membrane protease FtsH catalytic subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|156326605|ref|XP_001618654.1| hypothetical protein NEMVEDRAFT_v1g2803 [Nematostella vectensis]
 gi|156199720|gb|EDO26554.1| predicted protein [Nematostella vectensis]
          Length = 337

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT    P    +E+    I +Q+ + AV + L +    +Q+  D      P+ +LL GP 
Sbjct: 127 LTNEEKPNVSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGID-----PPRGVLLYGPP 181

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 182 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 227


>gi|86148133|ref|ZP_01066432.1| cell division protein FtsH [Vibrio sp. MED222]
 gi|85834050|gb|EAQ52209.1| cell division protein FtsH [Vibrio sp. MED222]
          Length = 376

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|67924655|ref|ZP_00518065.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67853505|gb|EAM48854.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A   F  +  ++F E+ +VG    + +RDL + A
Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEADVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 296


>gi|332685809|ref|YP_004455583.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / negative
           regulator of genetic competence clcC/mecB [Melissococcus
           plutonius ATCC 35311]
 gi|332369818|dbj|BAK20774.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / negative
           regulator of genetic competence clcC/mecB [Melissococcus
           plutonius ATCC 35311]
          Length = 829

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S L + ++GQ +A +AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 513 ELESILHKRVVGQNEAVKAVSKAIR-RAR-----SGLKDPKRPIGSFMFLGPTGVGKTEL 566

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 567 AKALAEAMFGSEDALIRVDMSEFMERYNTSRLVGSPPGYVG 607


>gi|309810915|ref|ZP_07704716.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
 gi|308435221|gb|EFP59052.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
          Length = 682

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 198 IPKGVLLYGPPGTGKTLLARAVAGEANVPFYTISGSDFVEM-FVGVGASR-VRDL 250


>gi|298488449|ref|ZP_07006480.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157074|gb|EFH98163.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|154498690|ref|ZP_02037068.1| hypothetical protein BACCAP_02681 [Bacteroides capillosus ATCC
           29799]
 gi|150272429|gb|EDM99623.1| hypothetical protein BACCAP_02681 [Bacteroides capillosus ATCC
           29799]
          Length = 837

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRL 73
           EL R ++GQ+DA +AVA A+R R R       L++   P  + L +GPTGVGKT + + L
Sbjct: 513 ELHRQVVGQEDAVKAVARAVR-RGR-----VGLKEPGRPTGVFLFLGPTGVGKTELCKAL 566

Query: 74  A 74
           A
Sbjct: 567 A 567


>gi|157124006|ref|XP_001654016.1| paraplegin [Aedes aegypti]
 gi|108874145|gb|EAT38370.1| paraplegin [Aedes aegypti]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 12/95 (12%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK+ V      L+   R Q+L A +     PK  LL+GP G GKT +++ +A  
Sbjct: 216 VAGLQEAKQEVMEFVDYLKAPERYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 270

Query: 77  AGAPFIKVEVTKFTE-IGYVGRNVEQIIRDLVDVA 110
           A  PF+ +  ++F E IG +G      +RDL   A
Sbjct: 271 AAVPFLSMNGSEFIEMIGGLG---AARVRDLFKEA 302


>gi|71735142|ref|YP_276318.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555695|gb|AAZ34906.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|324998065|ref|ZP_08119177.1| putative ATP-dependent Clp protease [Pseudonocardia sp. P1]
          Length = 848

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ+DA ++V+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 511 ELHKRIIGQEDAVKSVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|241206499|ref|YP_002977595.1| ATP-dependent chaperone ClpB [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860389|gb|ACS58056.1| ATP-dependent chaperone ClpB [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 866

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDETAMVRMDMSEYMEKHSVAR 646


>gi|261342621|ref|ZP_05970479.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
 gi|288315269|gb|EFC54207.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|225434315|ref|XP_002276130.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 573

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 327 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 381

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 382 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 409


>gi|4454688|gb|AAD20962.1| FtsH homolog [Homo sapiens]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 117 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 166


>gi|295698486|ref|YP_003603141.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
 gi|291157308|gb|ADD79753.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
          Length = 605

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL++GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPKGILMIGPPGTGKTLLAKAIAGEARVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|269140172|ref|YP_003296873.1| protein disaggregation chaperone [Edwardsiella tarda EIB202]
 gi|267985833|gb|ACY85662.1| protein disaggregation chaperone [Edwardsiella tarda EIB202]
          Length = 857

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHRRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|241950643|ref|XP_002418044.1| component of mitochondrial inner membrane m-AAA protease;
           mitochondrial respiratory chain complexes assembly
           protein, putative [Candida dubliniensis CD36]
 gi|223641383|emb|CAX43343.1| component of mitochondrial inner membrane m-AAA protease [Candida
           dubliniensis CD36]
          Length = 941

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L+N  + ++L A +     P+  +L GP G GKT +++  A  
Sbjct: 470 VAGMAEAKQEVMEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 524

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 525 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 556


>gi|168052515|ref|XP_001778695.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669910|gb|EDQ56488.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 170 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 224

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 225 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 252


>gi|119510404|ref|ZP_01629538.1| ATPase [Nodularia spumigena CCY9414]
 gi|119464933|gb|EAW45836.1| ATPase [Nodularia spumigena CCY9414]
          Length = 884

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLETHLHQRVIGQHEAVAAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+    +    I+++++++ E   V R V
Sbjct: 624 ARALAQFLFDSDDALIRLDMSEYMEKHSVSRLV 656


>gi|116254016|ref|YP_769854.1| chaperone ClpB (heat-shock protein) [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258664|emb|CAK09768.1| putative chaperone ClpB (heat-shock protein) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 866

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDETAMVRMDMSEYMEKHSVAR 646


>gi|19552991|ref|NP_600993.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390668|ref|YP_226070.1| Clp family ATP-binding protease [Corynebacterium glutamicum ATCC
           13032]
 gi|21324559|dbj|BAB99183.1| ATPases with chaperone activity, ATP-binding subunit
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326006|emb|CAF20169.1| PUTATIVE CLP-FAMILY ATP-BINDING PROTEASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 595

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMP-KNILLVG 60
           + F      I  +LD  ++ Q  A   VA       RR QL  ADL D+  P  N L  G
Sbjct: 277 IAFKVDGTSIKDKLDEKVMAQSLATTVVA-------RRLQLVVADLHDKSRPLSNFLFTG 329

Query: 61  PTGVGKTAISRRLARL 76
           PTGVGKT + ++LAR+
Sbjct: 330 PTGVGKTELVKQLARV 345


>gi|330888664|gb|EGH21325.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 490

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 42  IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 98


>gi|255526409|ref|ZP_05393322.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296188377|ref|ZP_06856768.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255509915|gb|EET86242.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296046998|gb|EFG86441.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 606

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 197 LPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDLFQQA 253


>gi|255261200|ref|ZP_05340542.1| ATP-dependent chaperone ClpB [Thalassiobium sp. R2A62]
 gi|255103535|gb|EET46209.1| ATP-dependent chaperone ClpB [Thalassiobium sp. R2A62]
          Length = 871

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ    RAV+ A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 563 ELGKRVIGQHGPVRAVSNAVR-RAR-----AGLNDEGRPLGSFLFLGPTGVGKTELTKAV 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 617 AEFLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|237809508|ref|YP_002893948.1| ATP-dependent chaperone ClpB [Tolumonas auensis DSM 9187]
 gi|237501769|gb|ACQ94362.1| ATP-dependent chaperone ClpB [Tolumonas auensis DSM 9187]
          Length = 858

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L + +IGQ +A  AVA A+R R R     A L D + P  + L +GPTGVGKT + + L
Sbjct: 565 KLHQRVIGQDEAVNAVANAIR-RSR-----AGLSDPMRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 619 AEFLFDTQDAMVRIDMSEFMEKHSVARLV 647


>gi|223936532|ref|ZP_03628443.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894696|gb|EEF61146.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R + L A +     PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 207 LKNPNRYKSLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAQVPFFSISGSDFVEM- 260

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 261 FVGVGAAR-VRDL 272


>gi|170077059|ref|YP_001733697.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. PCC 7002]
 gi|169884728|gb|ACA98441.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. PCC 7002]
          Length = 979

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQQ+A  AV+ A+R R R     A ++D   P  + + +GPTGVGKT +
Sbjct: 582 QLEGHLHERVIGQQEAVEAVSAAIR-RAR-----AGMKDPSRPIGSFMFMGPTGVGKTEL 635

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           +R LA     +    ++++++++ E   V R
Sbjct: 636 ARALAAFLFDSEEAMVRIDMSEYMEKHAVSR 666


>gi|209551097|ref|YP_002283014.1| ATP-dependent chaperone ClpB [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536853|gb|ACI56788.1| ATP-dependent chaperone ClpB [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 866

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDETAMVRMDMSEYMEKHSVAR 646


>gi|152972102|ref|YP_001337248.1| ATP-dependent metalloprotease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896685|ref|YP_002921430.1| ATP-dependent metalloprotease [Klebsiella pneumoniae NTUH-K2044]
 gi|329997735|ref|ZP_08302903.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
 gi|150956951|gb|ABR78981.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549012|dbj|BAH65363.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328538924|gb|EGF64983.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|126179252|ref|YP_001047217.1| proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
 gi|166199293|sp|A3CV35|PAN_METMJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|125862046|gb|ABN57235.1| Proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A F++V  ++  +  Y+G    +++R+L D+A
Sbjct: 187 PKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQ-KYIGEGA-RLVRELFDLA 242


>gi|126173263|ref|YP_001049412.1| ATPase [Shewanella baltica OS155]
 gi|152999622|ref|YP_001365303.1| ATPase [Shewanella baltica OS185]
 gi|160874241|ref|YP_001553557.1| ATPase AAA-2 domain-containing protein [Shewanella baltica OS195]
 gi|217974426|ref|YP_002359177.1| ATP-dependent chaperone ClpB [Shewanella baltica OS223]
 gi|304410380|ref|ZP_07391998.1| ATP-dependent chaperone ClpB [Shewanella baltica OS183]
 gi|307304472|ref|ZP_07584222.1| ATP-dependent chaperone ClpB [Shewanella baltica BA175]
 gi|125996468|gb|ABN60543.1| ATPase AAA-2 domain protein [Shewanella baltica OS155]
 gi|151364240|gb|ABS07240.1| ATPase AAA-2 domain protein [Shewanella baltica OS185]
 gi|160859763|gb|ABX48297.1| ATP-dependent chaperone ClpB [Shewanella baltica OS195]
 gi|217499561|gb|ACK47754.1| ATP-dependent chaperone ClpB [Shewanella baltica OS223]
 gi|304350864|gb|EFM15264.1| ATP-dependent chaperone ClpB [Shewanella baltica OS183]
 gi|306911874|gb|EFN42298.1| ATP-dependent chaperone ClpB [Shewanella baltica BA175]
 gi|315266475|gb|ADT93328.1| ATP-dependent chaperone ClpB [Shewanella baltica OS678]
          Length = 857

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|119358442|ref|YP_913086.1| FtsH-2 peptidase [Chlorobium phaeobacteroides DSM 266]
 gi|119355791|gb|ABL66662.1| membrane protease FtsH catalytic subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 694

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 225 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 281


>gi|330991477|ref|ZP_08315428.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
 gi|329761496|gb|EGG77989.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
          Length = 867

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELRKSVVGQEPALKAVSNAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELCKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           AR         +++++++F E   V R V
Sbjct: 623 ARFLFDDEKALLRIDMSEFMEKHAVSRLV 651


>gi|320322535|gb|EFW78628.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|311898554|dbj|BAJ30962.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MP+ +LL GP G GKT ++R +A  A  PF     ++F E  +G     V ++  +   V
Sbjct: 224 MPRGVLLSGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGASRVRELFSEARKV 283

Query: 110 AINIV 114
           A  IV
Sbjct: 284 APAIV 288


>gi|307110547|gb|EFN58783.1| hypothetical protein CHLNCDRAFT_140544 [Chlorella variabilis]
          Length = 751

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  AG PF+ +  + F E+ 
Sbjct: 399 LKNPGKYKELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLTISGSDFMEM- 452

Query: 94  YVG 96
           +VG
Sbjct: 453 FVG 455


>gi|294142067|ref|YP_003558045.1| cell division protein FtsH [Shewanella violacea DSS12]
 gi|293328536|dbj|BAJ03267.1| cell division protein FtsH [Shewanella violacea DSS12]
          Length = 654

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|283788184|ref|YP_003368049.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951638|emb|CBG91338.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|262042737|ref|ZP_06015891.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039962|gb|EEW41079.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|257482268|ref|ZP_05636309.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624595|ref|ZP_06457549.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646954|ref|ZP_06478297.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320329996|gb|EFW85983.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868239|gb|EGH02948.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987048|gb|EGH85151.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|224436509|ref|ZP_03657523.1| ATP-dependent Clp protease ClpB [Helicobacter cinaedi CCUG 18818]
 gi|313143017|ref|ZP_07805210.1| ATP-dependent CLP protease ClpB [Helicobacter cinaedi CCUG 18818]
 gi|313128048|gb|EFR45665.1| ATP-dependent CLP protease ClpB [Helicobacter cinaedi CCUG 18818]
          Length = 750

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + +  GP+GVGKT +S+ LA+L G  FIK +++++ E   + R
Sbjct: 475 SFVFAGPSGVGKTELSKELAKLLGIAFIKFDMSEYMEPHSISR 517


>gi|168013202|ref|XP_001759290.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689603|gb|EDQ75974.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 220

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|146313246|ref|YP_001178320.1| ATP-dependent metalloprotease [Enterobacter sp. 638]
 gi|145320122|gb|ABP62269.1| membrane protease FtsH catalytic subunit [Enterobacter sp. 638]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKDEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|90412479|ref|ZP_01220482.1| putative cell division protein FtsH [Photobacterium profundum 3TCK]
 gi|90326516|gb|EAS42922.1| putative cell division protein FtsH [Photobacterium profundum 3TCK]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  ILLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|332800110|ref|YP_004461609.1| ATPase AAA-2 domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332697845|gb|AEE92302.1| ATPase AAA-2 domain protein [Tepidanaerobacter sp. Re1]
          Length = 813

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A +AVA A+R  +      A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 503 LHNRVIGQDEAVKAVAKAIRRAY------AGLKDPARPIGSFIFLGPTGVGKTELARALA 556


>gi|281203381|gb|EFA77581.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 8   SPREIVSELDRYIIGQ-----QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +PR+I S  D   IG      QD K  + + L      Q    D+    +PK ILL GP 
Sbjct: 70  NPRDIASTFDD--IGGLDDIIQDVKDTIFLPLE-----QHESVDMSQFTLPKGILLYGPP 122

Query: 63  GVGKTAISRRLARLAGAPFIKV 84
           G GKT +++ +A+ +G  F+ +
Sbjct: 123 GTGKTMLAKAIAKESGYFFLNI 144


>gi|301107181|ref|XP_002902673.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262098547|gb|EEY56599.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 874

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LRN+ R   L A +     PK  LLVGP G GKT +++  A  A  PF  +  + F E+ 
Sbjct: 402 LRNQKRFTDLGAKI-----PKGALLVGPPGTGKTLLAKATAGEASVPFFSISGSDFIEM- 455

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 456 FVGVGPSR-VRDLFKEA 471


>gi|254467968|ref|ZP_05081374.1| cell division protein [beta proteobacterium KB13]
 gi|207086778|gb|EDZ64061.1| cell division protein [beta proteobacterium KB13]
          Length = 631

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFYTISGSDFVEM-FVGVGAAR-VRDMFEQA 244


>gi|197294216|ref|YP_001798757.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853543|emb|CAM11403.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 688

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV---EQIIRD 105
           D++ PK  LL GP G GKT + + L+    A FI+ E +K  +  YVG  V   E+I  +
Sbjct: 286 DKIRPKGYLLYGPPGTGKTFLLKSLSNECNAYFIEFEPSKLDKT-YVGEGVGEWEKIWME 344

Query: 106 LV--DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 345 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 386


>gi|156390974|ref|XP_001635544.1| predicted protein [Nematostella vectensis]
 gi|156222639|gb|EDO43481.1| predicted protein [Nematostella vectensis]
          Length = 417

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT    P    +E+    I +Q+ + AV + L +    +Q+  D      P+ +LL GP 
Sbjct: 153 LTNEEKPNVSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGID-----PPRGVLLYGPP 207

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 208 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 253


>gi|189345643|ref|YP_001942172.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
 gi|189339790|gb|ACD89193.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
          Length = 694

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEAEVPFFSISGSDFVEM-FVGVGAAR-VRDL 281


>gi|159113065|ref|XP_001706760.1| 26S protease regulatory subunit 8 [Giardia lamblia ATCC 50803]
 gi|157434859|gb|EDO79086.1| 26S protease regulatory subunit 8 [Giardia lamblia ATCC 50803]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MPK +LL G  G GK+A++R +A   G  FI+V  ++     IG   R V Q+ +  +  
Sbjct: 176 MPKGVLLYGAPGCGKSAVARAVAHHCGCTFIRVSGSELLSKYIGEGSRMVRQVFQMALKN 235

Query: 110 AINIV 114
           A  IV
Sbjct: 236 APAIV 240


>gi|330950313|gb|EGH50573.1| peptidase M41, FtsH [Pseudomonas syringae Cit 7]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|295108565|emb|CBL22518.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
           obeum A2-162]
          Length = 832

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 513 ELHKRVIGQDEAVKAVAQAVK-RGR-----VGLKDPHRPIGSFLFLGPTGVGKTELSKAL 566

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A     +    I+V+++++ E            GYVG
Sbjct: 567 AEAVFGSEQAMIRVDMSEYMEKHSVSKLIGSPPGYVG 603


>gi|291303744|ref|YP_003515022.1| ATPase AAA-2 domain-containing protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572964|gb|ADD45929.1| ATPase AAA-2 domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 854

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ DA +AV+ A+R R R     A L+D   P  + +  GP+GVGK+ +S+ L
Sbjct: 513 ELHKRIIGQHDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKSELSKAL 566

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G+    I++++++F +   V R V
Sbjct: 567 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 595


>gi|262370291|ref|ZP_06063617.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           johnsonii SH046]
 gi|262314633|gb|EEY95674.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           johnsonii SH046]
          Length = 758

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+  A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 454 DLKRVVFGQDEAIEALGSAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 507

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A+L G   ++ +++++ E   V R
Sbjct: 508 AKLLGVELVRFDMSEYMERHAVSR 531


>gi|241855541|ref|XP_002416029.1| paraplegin, putative [Ixodes scapularis]
 gi|215510243|gb|EEC19696.1| paraplegin, putative [Ixodes scapularis]
          Length = 680

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 15/100 (15%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G      +RDL   A
Sbjct: 246 VPKGVLLLGPPGCGKTMLAKAVATEASVPFLAMAGSEFIEMIGGLG---AARVRDLFKEA 302

Query: 111 ------INIVRE-----SRRDEVREQASINAEERILDALV 139
                 I  + E      RR  +  + S   EE+ L+ L+
Sbjct: 303 RKRSPCIVYIDEIDAIGRRRSNLGAEGSTGEEEQTLNQLL 342


>gi|295837256|ref|ZP_06824189.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. SPB74]
 gi|197699938|gb|EDY46871.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. SPB74]
          Length = 841

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAVKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +++ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELAKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|218782102|ref|YP_002433420.1| ATP-dependent metalloprotease FtsH [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763486|gb|ACL05952.1| ATP-dependent metalloprotease FtsH [Desulfatibacillum alkenivorans
           AK-01]
          Length = 663

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 182 IPKGVLLMGPPGSGKTLLARAIAGEAEVPFFTISGSDFVEM-FVGVGASR-VRDL 234


>gi|47228004|emb|CAF97633.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 311 LPKGVLLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 360


>gi|308160004|gb|EFO62517.1| 26S protease regulatory subunit 8 [Giardia lamblia P15]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MPK +LL G  G GK+A++R +A   G  FI+V  ++     IG   R V Q+ +  +  
Sbjct: 176 MPKGVLLYGAPGCGKSAVARAVAHHCGCTFIRVSGSELLSKYIGEGSRMVRQVFQMALKN 235

Query: 110 AINIV 114
           A  IV
Sbjct: 236 APAIV 240


>gi|255526223|ref|ZP_05393141.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510063|gb|EET86385.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 592

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK ++L G  G GKT +++ +A  AG PF  V  + F ++ YVG    + IR L   A 
Sbjct: 182 MPKGVILYGEPGTGKTLLAKAVAGEAGVPFYAVSGSDFIQV-YVGVGASR-IRQLFKKAR 239

Query: 112 N--------IVRE-----SRRDEVREQASINAEERILDALVGKTATSNTRE 149
           N         + E      +RD  +     +  ++ L+AL+ + +  N +E
Sbjct: 240 NNSTGKAVIFIDEIDAIGKKRDSGKSSGGSDERDQTLNALLTEMSGFNEKE 290


>gi|331011492|gb|EGH91548.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 141 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 197


>gi|326328800|ref|ZP_08195136.1| putative cell division protein [Nocardioidaceae bacterium Broad-1]
 gi|325953422|gb|EGD45426.1| putative cell division protein [Nocardioidaceae bacterium Broad-1]
          Length = 679

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLYGQPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|322795307|gb|EFZ18112.1| hypothetical protein SINV_08849 [Solenopsis invicta]
          Length = 378

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  AR A   FI ++V+  T+  Y
Sbjct: 132 PKGVLLYGPPGCGKTMIAKATAREAKTRFINLDVSILTDKWY 173


>gi|255080440|ref|XP_002503800.1| predicted protein [Micromonas sp. RCC299]
 gi|226519067|gb|ACO65058.1| predicted protein [Micromonas sp. RCC299]
          Length = 948

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +PK +LL GP G GKT ++R +A  AG PF     ++F E  +G   + V Q+ 
Sbjct: 481 LPKGVLLSGPPGTGKTLLARAVAGEAGVPFFYRAGSEFEEMFVGVGSKRVRQLF 534


>gi|261856556|ref|YP_003263839.1| ATP-dependent metalloprotease FtsH [Halothiobacillus neapolitanus
           c2]
 gi|261837025|gb|ACX96792.1| ATP-dependent metalloprotease FtsH [Halothiobacillus neapolitanus
           c2]
          Length = 656

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 VPRGVLMVGPPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|224104403|ref|XP_002313426.1| predicted protein [Populus trichocarpa]
 gi|222849834|gb|EEE87381.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRD 105
           +PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ +VG      RN+ Q  R 
Sbjct: 333 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQ 391

Query: 106 LVDVAINI 113
                I I
Sbjct: 392 CAPSIIFI 399


>gi|213966654|ref|ZP_03394805.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|301383164|ref|ZP_07231582.1| cell division protein FtsH [Pseudomonas syringae pv. tomato Max13]
 gi|302063401|ref|ZP_07254942.1| cell division protein FtsH [Pseudomonas syringae pv. tomato K40]
 gi|302133774|ref|ZP_07259764.1| cell division protein FtsH [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928504|gb|EEB62048.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|331016641|gb|EGH96697.1| cell division protein FtsH [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|212223608|ref|YP_002306844.1| TBP-interacting protein [Thermococcus onnurineus NA1]
 gi|212008565|gb|ACJ15947.1| TBP-interacting protein [Thermococcus onnurineus NA1]
          Length = 440

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 26/115 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
           ++GQ  A+ A  IA+             R +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 39  MVGQVKAREAAGIAVE---------LIKRGKLAGKGILLVGPTGSGKTAIAMGIARELGE 89

Query: 79  -APFIKV--------EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
             PF+++        EV K TE       ++Q +R  + V I+  R+    EV+E
Sbjct: 90  DVPFVQIAGSEIYSAEVKK-TEF------LKQTLRRAIGVRISEERKVYEGEVKE 137


>gi|254444990|ref|ZP_05058466.1| ATP-dependent metallopeptidase HflB subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198259298|gb|EDY83606.1| ATP-dependent metallopeptidase HflB subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 191 IPKGILMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDMFE 245


>gi|148652347|ref|YP_001279440.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. PRwf-1]
 gi|148571431|gb|ABQ93490.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. PRwf-1]
          Length = 627

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGILMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|49522757|gb|AAH73998.1| ATAD1 protein [Homo sapiens]
 gi|119570565|gb|EAW50180.1| ATPase family, AAA domain containing 1, isoform CRA_c [Homo
           sapiens]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167


>gi|92114558|ref|YP_574486.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Chromohalobacter salexigens DSM 3043]
 gi|91797648|gb|ABE59787.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Chromohalobacter salexigens DSM 3043]
          Length = 753

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S R+++S L+R     + GQ +A  ++A A++         A L+    P  + L  GPT
Sbjct: 447 SDRKLLSNLERDLKMLVFGQDEAITSLAAAIKLSR------AGLKSPDKPVGSFLFSGPT 500

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++R+L++L G   ++ +++++ E   V R
Sbjct: 501 GVGKTEVARQLSQLMGIELVRFDMSEYMERHTVSR 535


>gi|28871631|ref|NP_794250.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854883|gb|AAO57945.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|330963968|gb|EGH64228.1| cell division protein FtsH [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|330877240|gb|EGH11389.1| cell division protein FtsH [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|325689367|gb|EGD31373.1| cell division protein FtsH [Streptococcus sanguinis SK115]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|330840152|ref|XP_003292084.1| hypothetical protein DICPUDRAFT_39991 [Dictyostelium purpureum]
 gi|325077690|gb|EGC31386.1| hypothetical protein DICPUDRAFT_39991 [Dictyostelium purpureum]
          Length = 514

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +LVGP G GKT I++  A  A  PF     + F E+ +VG    + +RDL D+A
Sbjct: 78  IPRGAILVGPPGTGKTLIAKATAGEANVPFFSTSGSDFVEM-FVGVGPSR-VRDLFDLA 134


>gi|297171252|gb|ADI22259.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF0200_36I24]
 gi|297171364|gb|ADI22368.1| hypothetical protein [uncultured nuHF2 cluster bacterium
           HF0500_02A10]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+ + +IGQ DA  A+A ++R R R     A +RD   P  + +  GPTGVGKT ++R L
Sbjct: 519 EIHKRVIGQDDAITAIAKSIR-RSR-----AGMRDPNRPIGSFIFSGPTGVGKTELARAL 572

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A    A     I+V+++++ E            GYVG
Sbjct: 573 AEFLFADRDALIRVDMSEYMEKFSISRLIGAPPGYVG 609


>gi|313890554|ref|ZP_07824182.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121071|gb|EFR44182.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
          Length = 699

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI S L  ++IGQ  A  AVA A+R NR       A   +   P  + L VGPTGVGKT
Sbjct: 407 KEIASRLKAHVIGQDQAVSAVARAIRRNR-------AGFDEGNRPIGSFLFVGPTGVGKT 459

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 460 ELAKQLA 466


>gi|296104889|ref|YP_003615035.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059348|gb|ADF64086.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|290511555|ref|ZP_06550924.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
 gi|289776548|gb|EFD84547.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|317051276|ref|YP_004112392.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurispirillum indicum S5]
 gi|316946360|gb|ADU65836.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurispirillum indicum S5]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT +SR+LA L G  F + +++++ E   V R
Sbjct: 493 SFLFTGPTGVGKTEVSRQLAELLGVHFQRFDMSEYMEKHAVAR 535


>gi|104773522|ref|YP_618502.1| cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422603|emb|CAI97206.1| Cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEM- 261

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 262 FVGVGASR-VRDL 273


>gi|330958056|gb|EGH58316.1| peptidase M41, FtsH [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|302185425|ref|ZP_07262098.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae 642]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|294498032|ref|YP_003561732.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
           megaterium QM B1551]
 gi|294347969|gb|ADE68298.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
           megaterium QM B1551]
          Length = 704

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 19/159 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L + +IGQQ+A   VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 406 KHLAEHLAQKVIGQQEAVEKVAKAIR-RSR-----AGLKAKHRPIGSFLFVGPTGVGKTE 459

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++ LA  L G+    ++++++++ E        +  +  L+      V      ++ E+
Sbjct: 460 LTKTLAEELFGSKDAMVRLDMSEYME--------KHAVSKLIGSPPGYVGHEEAGQLTEK 511

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              N    IL   + K A  + + +F + L DG ++D +
Sbjct: 512 VRRNPYSIILLDEIEK-AHPDVQHMFLQILEDGRLTDSQ 549


>gi|302521030|ref|ZP_07273372.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|318061546|ref|ZP_07980267.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actG]
 gi|318076619|ref|ZP_07983951.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actF]
 gi|333025279|ref|ZP_08453343.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
 gi|302429925|gb|EFL01741.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|332745131|gb|EGJ75572.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
          Length = 841

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ+DA +A++ A+R R R     A L+D   P  + +
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAVKALSQAIR-RTR-----AGLKDPKRPGGSFI 547

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +++ LA          I +++++F+E   V R
Sbjct: 548 FAGPSGVGKTELAKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|254787192|ref|YP_003074621.1| cell division protease ftsH [Teredinibacter turnerae T7901]
 gi|237686727|gb|ACR13991.1| cell division protease ftsH [Teredinibacter turnerae T7901]
          Length = 638

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+ GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLMAGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|66047414|ref|YP_237255.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|237798556|ref|ZP_04587017.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|289676017|ref|ZP_06496907.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae FF5]
 gi|63258121|gb|AAY39217.1| Peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|330895313|gb|EGH27651.1| peptidase M41, FtsH [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937939|gb|EGH41726.1| peptidase M41, FtsH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330981083|gb|EGH79186.1| peptidase M41, FtsH [Pseudomonas syringae pv. aptata str. DSM
           50252]
 gi|331021409|gb|EGI01466.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 634

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT I++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|38234547|ref|NP_940314.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200810|emb|CAE50514.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           diphtheriae]
          Length = 883

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA ++V+ A+R R R     A L+D   P  + +
Sbjct: 515 FKLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 568

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 569 FAGPSGVGKTELSKSLA 585


>gi|326512682|dbj|BAJ99696.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 808

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++ LA  AGA F+ + ++      Y G + E+ IR L  +A  +
Sbjct: 500 KGILLFGPPGTGKTMLAKALANEAGASFLNISLSTIMS-KYYG-DAEKTIRALFSLATKL 557

Query: 114 V 114
            
Sbjct: 558 A 558


>gi|296088557|emb|CBI37548.3| unnamed protein product [Vitis vinifera]
          Length = 1207

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 700 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 743


>gi|240047434|ref|YP_002960822.1| Cell division protein [Mycoplasma conjunctivae HRC/581]
 gi|310946905|sp|C5J6A7|FTSH_MYCCR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|239985006|emb|CAT04999.1| Cell division protein [Mycoplasma conjunctivae]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   ++ +R+L   A
Sbjct: 269 IPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASNFVEL-YVGVGAKR-VRELFKEA 325


>gi|149912460|ref|ZP_01900994.1| ATPase AAA-2 [Roseobacter sp. AzwK-3b]
 gi|149812866|gb|EDM72692.1| ATPase AAA-2 [Roseobacter sp. AzwK-3b]
          Length = 872

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 565 LHRRVIGQDQAVKAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 619 EFLFDDDQAMVRIDMSEFMEKHSVSR 644


>gi|111226012|ref|YP_716806.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
 gi|111153544|emb|CAJ65303.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
          Length = 834

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQQ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592


>gi|332654078|ref|ZP_08419822.1| negative regulator of genetic competence ClpC/MecB [Ruminococcaceae
           bacterium D16]
 gi|332517164|gb|EGJ46769.1| negative regulator of genetic competence ClpC/MecB [Ruminococcaceae
           bacterium D16]
          Length = 839

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAI 69
           E+   L+R ++GQ+ A + VA A+R    R +L   L+D   P    LL+GP+GVGKT +
Sbjct: 525 ELEQSLERTVLGQEQAVKTVARAVR----RGRL--GLKDPRRPVGCFLLLGPSGVGKTQL 578

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTEIGYVGR 97
            R LA+ L G+    I+ +++++ E   V R
Sbjct: 579 CRSLAQTLFGSSEALIRFDMSEYMEAHSVSR 609


>gi|315656011|ref|ZP_07908909.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii ATCC 51333]
 gi|315490075|gb|EFU79702.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii ATCC 51333]
          Length = 884

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ DA +AV+ ++R R R     A L+D   P  + +  GPTGVGKT +++ L
Sbjct: 519 ELHKRIIGQDDAVKAVSQSIR-RTR-----AGLKDPKRPGGSFVFAGPTGVGKTELAKAL 572

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A          +++++++F+E            GYVG
Sbjct: 573 AEFLFGDENALVQLDMSEFSEKHTASRLFGSPPGYVG 609


>gi|299135163|ref|ZP_07028354.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Afipia sp.
           1NLS2]
 gi|298590140|gb|EFI50344.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Afipia sp.
           1NLS2]
          Length = 786

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R + + L R + GQ  A  A+A +++         A LR+   P    L  GPTGVGKT 
Sbjct: 458 RHLETTLKRTVFGQDKAIEALAASIKLAR------AGLREPEKPIGCYLFSGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 512 VAKQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 568


>gi|296185574|ref|ZP_06853983.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049702|gb|EFG89127.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 582

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK ++L G  G GKT +++ +A  AG PF  V  + F ++ YVG    + IR L   A 
Sbjct: 182 MPKGVILYGEPGTGKTLLAKAVAGEAGVPFYAVSGSDFIQV-YVGVGASR-IRQLFKKAR 239

Query: 112 N--------IVRE-----SRRDEVREQASINAEERILDALVGKTATSNTRE 149
           N         + E      +RD  +     +  ++ L+AL+ + +  N +E
Sbjct: 240 NNSTGKAVIFIDEIDAIGKKRDSGKSSGGSDERDQTLNALLTEMSGFNEKE 290


>gi|294776010|ref|ZP_06741506.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
 gi|294450148|gb|EFG18652.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
          Length = 742

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GY+G     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 554


>gi|289808428|ref|ZP_06539057.1| ATP-dependent metalloprotease FtsH [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 115

 Score = 42.4 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 14  VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 69  AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 100


>gi|260802686|ref|XP_002596223.1| hypothetical protein BRAFLDRAFT_202938 [Branchiostoma floridae]
 gi|229281477|gb|EEN52235.1| hypothetical protein BRAFLDRAFT_202938 [Branchiostoma floridae]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 116 PKGVLLYGPPGCGKTMIAKATAKEAGCRFINLQPSVLTDKWY 157


>gi|190893588|ref|YP_001980130.1| chaperone heat-shock protein [Rhizobium etli CIAT 652]
 gi|190698867|gb|ACE92952.1| chaperone heat-shock protein [Rhizobium etli CIAT 652]
 gi|327193411|gb|EGE60311.1| chaperone heat-shock protein [Rhizobium etli CNPAF512]
          Length = 866

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDETAMVRMDMSEYMEKHSVAR 646


>gi|150003220|ref|YP_001297964.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
 gi|149931644|gb|ABR38342.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
          Length = 742

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GY+G     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 554


>gi|134298058|ref|YP_001111554.1| ATPase [Desulfotomaculum reducens MI-1]
 gi|134050758|gb|ABO48729.1| ATPase AAA-2 domain protein [Desulfotomaculum reducens MI-1]
          Length = 812

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 510 LHRRVVGQDDAVKAVSRAVR-RAR-----AGLKDPKRPVGSFIFLGPTGVGKTELARALA 563

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     ++++++++ E   V R V
Sbjct: 564 ESLFGDEDALVRIDMSEYMEKHAVSRLV 591


>gi|127513876|ref|YP_001095073.1| ATPase [Shewanella loihica PV-4]
 gi|126639171|gb|ABO24814.1| ATPase AAA-2 domain protein [Shewanella loihica PV-4]
          Length = 857

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHTRVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +      A  +++++++F E   V R V
Sbjct: 620 KFLFDTEAAMVRIDMSEFMEKHSVSRLV 647


>gi|328543446|ref|YP_004303555.1| endopeptidase Clp ATP-binding chain A [polymorphum gilvum
           SL003B-26A1]
 gi|326413190|gb|ADZ70253.1| Endopeptidase Clp ATP-binding chain A [Polymorphum gilvum
           SL003B-26A1]
          Length = 813

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R + GQ  A   +A A++         A LR+   P  + L  GPTGVGKT ++R+L
Sbjct: 465 ELKRVVYGQDKAIDTLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQL 518

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           A   G   I+ +++++ E            GYVG +   ++ D VD
Sbjct: 519 ASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 564


>gi|317055620|ref|YP_004104087.1| ATPase AAA-2 domain-containing protein [Ruminococcus albus 7]
 gi|315447889|gb|ADU21453.1| ATPase AAA-2 domain protein [Ruminococcus albus 7]
          Length = 783

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 20/101 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  E+ + +IGQ +A   VA A++ R R Q     L     P + + VGPTGVGKT +
Sbjct: 475 RNLKDEMSKRVIGQDEAVDKVAKAIK-RTRVQ-----LDKRRRPASFIFVGPTGVGKTEL 528

Query: 70  SRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
            + L      A  P I+++++++ E            GYVG
Sbjct: 529 VKVLGESLFDATEPLIRIDMSEYMEKYSVSKLIGSPPGYVG 569


>gi|302425183|sp|P85200|PRS6B_HELAN RecName: Full=26S protease regulatory subunit 6B homolog
          Length = 414

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 168 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 222

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 223 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 250


>gi|293399913|ref|ZP_06644059.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306313|gb|EFE47556.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 677

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 195 IPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASR-VRDMFKKA 251


>gi|288917588|ref|ZP_06411952.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288350981|gb|EFC85194.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 662

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +L+VGP G GKT ++R +A  A  PF+ +  + F E+ +VG    + +RDL
Sbjct: 223 PRGVLMVGPPGTGKTLLARAVAGEAEVPFLSIAGSGFVEM-FVGVGASR-VRDL 274


>gi|218197837|gb|EEC80264.1| hypothetical protein OsI_22232 [Oryza sativa Indica Group]
          Length = 951

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           DEL  K ILL GP G GKT +++ LA  AGA FI +  +  T   +   + E++ + L  
Sbjct: 692 DELPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWF--GDAEKLTKALFS 749

Query: 109 VA 110
            A
Sbjct: 750 FA 751


>gi|270003255|gb|EEZ99702.1| hypothetical protein TcasGA2_TC002463 [Tribolium castaneum]
          Length = 781

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 329 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDLFSMA 385


>gi|88812889|ref|ZP_01128133.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitrococcus
           mobilis Nb-231]
 gi|88789811|gb|EAR20934.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitrococcus
           mobilis Nb-231]
          Length = 755

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73
           +L R I GQ  A   ++  ++         A LRD   P    L  GPTGVGKT ++R+L
Sbjct: 459 DLKRVIFGQDQAIDTLSTTIKMSR------AGLRDTEKPVGCFLFAGPTGVGKTEVTRQL 512

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A + G   ++ +++++ E   V R
Sbjct: 513 AEVMGVQLLRFDMSEYMERHTVSR 536


>gi|309803517|ref|ZP_07697610.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LactinV 11V1-d]
 gi|312870950|ref|ZP_07731055.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 3008A-a]
 gi|325911639|ref|ZP_08174047.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 143-D]
 gi|308164401|gb|EFO66655.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LactinV 11V1-d]
 gi|311093640|gb|EFQ51979.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 3008A-a]
 gi|325476625|gb|EGC79783.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 143-D]
          Length = 713

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 415 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 466

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 467 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 518

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 519 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 577

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ D + ++S
Sbjct: 578 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFDPLSKES 625

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 626 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 658


>gi|254884991|ref|ZP_05257701.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|319640393|ref|ZP_07995117.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
 gi|254837784|gb|EET18093.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|317387996|gb|EFV68851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
          Length = 742

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ++A   V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
               + +++++TE            GY+G     ++ D +    N V
Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 554


>gi|215408585|emb|CAR31142.1| HflB protein [Candidatus Phytoplasma prunorum]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ LA  A  PF  V  + F E+ YVG
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAVSGSVFVEM-YVG 103


>gi|189218258|ref|YP_001938900.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
           [Methylacidiphilum infernorum V4]
 gi|189185116|gb|ACD82301.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
           [Methylacidiphilum infernorum V4]
          Length = 836

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  A++ AL      Q+  ADL+D   P  + + +GPTGVGKT +++ 
Sbjct: 518 AELRKRVIGQDEAIEALSRAL------QRSRADLKDPKRPIGSFIFLGPTGVGKTMLAKT 571

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    I+++++++ E   V R
Sbjct: 572 LAEYVFGSAEALIQIDMSEYMEKFNVSR 599


>gi|156552394|ref|XP_001599924.1| PREDICTED: similar to 26S protease regulatory subunit 6b [Nasonia
           vitripennis]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 171 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 225

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 226 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|116754010|ref|YP_843128.1| ATPase central domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116665461|gb|ABK14488.1| AAA ATPase, central domain protein [Methanosaeta thermophila PT]
          Length = 385

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++GQ DAKR V +  R     ++          P+NIL  G +G GKT I+R LA  A  
Sbjct: 140 VVGQLDAKRKVKVIKRYLEEPERF-----GSWAPRNILFYGASGTGKTMIARALATEANV 194

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
             + V+ T    IG +VG    QI
Sbjct: 195 SMMPVKSTSL--IGEFVGEGARQI 216


>gi|325125153|gb|ADY84483.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEM- 261

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 262 FVGVGASR-VRDL 273


>gi|325002495|ref|ZP_08123607.1| ATP-dependent chaperone ClpB [Pseudonocardia sp. P1]
          Length = 873

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A R V+ A+R R R     A + DE  P  + L +GPTGVGKT +++ L
Sbjct: 568 ELGRRVIGQAEAVRVVSDAVR-RAR-----AGIADENRPTGSFLFLGPTGVGKTELAKAL 621

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          ++V++++++E   V R V
Sbjct: 622 AEFLFDDERAMVRVDMSEYSEKHSVARLV 650


>gi|319944196|ref|ZP_08018472.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
 gi|319742491|gb|EFV94902.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
          Length = 641

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 251


>gi|269793011|ref|YP_003317915.1| ATPase AAA-2 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100646|gb|ACZ19633.1| ATPase AAA-2 domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 819

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+   ++GQ++A  AVA A+R R R     + L+D   P  + L +GPTGVGKT ++RRL
Sbjct: 515 EIHSRLVGQEEAVNAVARAIR-RGR-----SGLKDPRRPVGSFLFLGPTGVGKTELARRL 568

Query: 74  AR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           A  L G+    I+ ++++F E            GYVG
Sbjct: 569 AWFLFGSEDAMIRFDMSEFMERHEVAKLIGAPPGYVG 605


>gi|182411953|ref|YP_001817019.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|310946751|sp|B1ZMG6|FTSH_OPITP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|177839167|gb|ACB73419.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 614

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK +LLVGP G GKT +++ +A  A A F  +  + F E+ YVG    ++
Sbjct: 206 MPKGVLLVGPPGTGKTMLAKAVAGEARANFYSLSGSDFVEL-YVGVGASRV 255


>gi|15672003|ref|NP_266177.1| hypothetical protein L0204 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490520|ref|YP_003352500.1| cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|1169754|sp|P46469|FTSH_LACLA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12722858|gb|AAK04119.1|AE006241_8 cell division protein FtsH [Lactococcus lactis subsp. lactis
           Il1403]
 gi|44027|emb|CAA48877.1| Tma protein [Lactococcus lactis]
 gi|281374338|gb|ADA63871.1| Cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|326405619|gb|ADZ62690.1| cell division protease FtsH [Lactococcus lactis subsp. lactis CV56]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|17298145|dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPase subunit3 [Oryza
           sativa Japonica Group]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 122 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 176

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 177 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 204


>gi|34580974|ref|ZP_00142454.1| cell division protein ftsH [Rickettsia sibirica 246]
 gi|28262359|gb|EAA25863.1| cell division protein ftsH [Rickettsia sibirica 246]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|325686490|gb|EGD28519.1| cell division protein FtsH [Streptococcus sanguinis SK72]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|302306319|ref|NP_982566.2| AAR025Cp [Ashbya gossypii ATCC 10895]
 gi|299788460|gb|AAS50390.2| AAR025Cp [Ashbya gossypii ATCC 10895]
          Length = 726

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL + A
Sbjct: 283 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFENA 339


>gi|298709371|emb|CBJ31305.1| putative; AAA family ATP ase [Ectocarpus siliculosus]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT I + +A  +GA F  +  +      ++G   E+++R L  VA
Sbjct: 271 LPKGLLLFGPPGTGKTLIGKAIAHQSGATFFSISASSLCSK-WIGEG-EKMVRTLFAVA 327


>gi|218661858|ref|ZP_03517788.1| chaperone heat-shock protein [Rhizobium etli IE4771]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 35  ELGKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 88

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 89  ARFLFDDETAMVRMDMSEYMEKHSVAR 115


>gi|198434764|ref|XP_002132138.1| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Ciona intestinalis]
          Length = 784

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 321 LKNPKKYEELGAKI-----PKGAILSGPPGTGKTLLAKATAGEASVPFISVSGSEFLEM- 374

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 375 FVGVGASR-VRDMFTLA 390


>gi|254423501|ref|ZP_05037219.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
 gi|196190990|gb|EDX85954.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
          Length = 941

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   +IGQ +A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 577 QLESHLHERVIGQSEAVTAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 630

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 631 ARALASFLFDTEEALIRLDMSEYMEKNSVSRLV 663


>gi|308811308|ref|XP_003082962.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116054840|emb|CAL56917.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AKR +      L+N  + + L A +     P   LLVGP G GKT +++  A  
Sbjct: 321 VAGCNEAKREIMEFVDFLKNPKKYEALGAKI-----PHGALLVGPPGTGKTLLAKATAGE 375

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF+ +  + F E+ +VG    + +RDL   A
Sbjct: 376 AGVPFLSISGSDFMEM-FVGVGPSR-VRDLFAQA 407


>gi|86743058|ref|YP_483458.1| ATPase AAA-2 [Frankia sp. CcI3]
 gi|86569920|gb|ABD13729.1| ATPase AAA-2 [Frankia sp. CcI3]
          Length = 834

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQQ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592


>gi|86359337|ref|YP_471229.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
 gi|86283439|gb|ABC92502.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
          Length = 866

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 566 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 620 ARFLFDDETAMVRMDMSEYMEKHSVAR 646


>gi|15891991|ref|NP_359705.1| cell division protein ftsH [Rickettsia conorii str. Malish 7]
 gi|22001595|sp|Q92JJ9|FTSH_RICCN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|15619105|gb|AAL02606.1| cell division protein ftsH [Rickettsia conorii str. Malish 7]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|327467725|gb|EGF13219.1| cell division protein FtsH [Streptococcus sanguinis SK330]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|325695773|gb|EGD37672.1| cell division protein FtsH [Streptococcus sanguinis SK150]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 595

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A+ AG  F     ++F E+ YVG
Sbjct: 156 LPKGALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEM-YVG 199


>gi|312884010|ref|ZP_07743727.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368468|gb|EFP96003.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 642

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  
Sbjct: 155 VAGCDEAKEDVAELVEYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGE 209

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 210 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|302754750|ref|XP_002960799.1| hypothetical protein SELMODRAFT_163630 [Selaginella moellendorffii]
 gi|302804236|ref|XP_002983870.1| hypothetical protein SELMODRAFT_180600 [Selaginella moellendorffii]
 gi|300148222|gb|EFJ14882.1| hypothetical protein SELMODRAFT_180600 [Selaginella moellendorffii]
 gi|300171738|gb|EFJ38338.1| hypothetical protein SELMODRAFT_163630 [Selaginella moellendorffii]
          Length = 408

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 162 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 216

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 217 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|242088165|ref|XP_002439915.1| hypothetical protein SORBIDRAFT_09g022490 [Sorghum bicolor]
 gi|241945200|gb|EES18345.1| hypothetical protein SORBIDRAFT_09g022490 [Sorghum bicolor]
          Length = 815

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +PK  LLVGP G GKT +++  A  +G PF+ +  + F E  +G     V  + ++    
Sbjct: 361 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQC 420

Query: 110 AINIV 114
           A +IV
Sbjct: 421 APSIV 425


>gi|226364401|ref|YP_002782183.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           opacus B4]
 gi|226242890|dbj|BAH53238.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Rhodococcus opacus B4]
          Length = 806

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL R ++GQ DA RA+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 499 RRLEDELHRRVVGQDDAVRAIARAVR-RSR-----TGMNDPDRPVGSFLFLGPTGVGKTE 552

Query: 69  ISRRL-ARLAG--APFIKVEVTKFTEIGYVGRNV 99
           +++ L A L G     +++++++F E   V R V
Sbjct: 553 LAKALAATLFGDENKMLRLDMSEFGERHTVSRLV 586


>gi|125553497|gb|EAY99206.1| hypothetical protein OsI_21164 [Oryza sativa Indica Group]
          Length = 855

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 536 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 595

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            IV     DEV             D+++G+ A     E  RK
Sbjct: 596 TIV---FVDEV-------------DSMLGQRARCGEHEAMRK 621


>gi|91206208|ref|YP_538563.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii RML369-C]
 gi|123084542|sp|Q1RGP0|FTSH_RICBR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|91069752|gb|ABE05474.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii RML369-C]
          Length = 638

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|85704172|ref|ZP_01035275.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. 217]
 gi|85671492|gb|EAQ26350.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. 217]
          Length = 778

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L R + GQ  A   ++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 464 KDLEASLKRVVFGQDAAIETLSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 518 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 568


>gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A+ AG  F     ++F E+ YVG
Sbjct: 218 LPKGALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEM-YVG 261


>gi|332365107|gb|EGJ42872.1| cell division protein FtsH [Streptococcus sanguinis SK355]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|319786409|ref|YP_004145884.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464921|gb|ADV26653.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLMVGPPGTGKTLLARAIAGEARVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|312115986|ref|YP_004013582.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221115|gb|ADP72483.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
          Length = 641

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|270159872|ref|ZP_06188528.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae D-4968]
 gi|289165374|ref|YP_003455512.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae NSW150]
 gi|269988211|gb|EEZ94466.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae D-4968]
 gi|288858547|emb|CBJ12428.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae NSW150]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A+A A+   R+  R  Q P            L  GPTGVGK
Sbjct: 452 RNLERDLKLLVYGQDQAITALASAIKLGRSGLRDPQKPVGC--------FLFAGPTGVGK 503

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 504 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 534


>gi|251772970|gb|EES53529.1| Peptidase M41, FtsH [Leptospirillum ferrodiazotrophum]
          Length = 577

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 163 IPKGVLVVGPPGTGKTLLAKAIAGEADVPFFHISGSDFVEM-FVGVGASR-VRDLFE 217


>gi|229586278|ref|YP_002844779.1| ATP-dependent metalloprotease FtsH [Rickettsia africae ESF-5]
 gi|228021328|gb|ACP53036.1| ATP-dependent metalloprotease FtsH [Rickettsia africae ESF-5]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|167526323|ref|XP_001747495.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773941|gb|EDQ87575.1| predicted protein [Monosiga brevicollis MX1]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 183 KQEMREAVELPLTHFELYQQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 237

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 238 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 263


>gi|163737811|ref|ZP_02145228.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
 gi|161389337|gb|EDQ13689.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
          Length = 773

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT ++++LA
Sbjct: 466 LKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 519

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 DTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570


>gi|125716901|ref|YP_001034034.1| membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase) [Streptococcus
           sanguinis SK36]
 gi|323350842|ref|ZP_08086501.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|125496818|gb|ABN43484.1| Membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase), putative
           [Streptococcus sanguinis SK36]
 gi|322123016|gb|EFX94719.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|324989591|gb|EGC21537.1| cell division protein FtsH [Streptococcus sanguinis SK353]
 gi|324991853|gb|EGC23776.1| cell division protein FtsH [Streptococcus sanguinis SK405]
 gi|324996257|gb|EGC28167.1| cell division protein FtsH [Streptococcus sanguinis SK678]
 gi|325698019|gb|EGD39900.1| cell division protein FtsH [Streptococcus sanguinis SK160]
 gi|327458477|gb|EGF04827.1| cell division protein FtsH [Streptococcus sanguinis SK1]
 gi|327463847|gb|EGF10163.1| cell division protein FtsH [Streptococcus sanguinis SK1057]
 gi|327471621|gb|EGF17064.1| cell division protein FtsH [Streptococcus sanguinis SK408]
 gi|327490351|gb|EGF22138.1| cell division protein FtsH [Streptococcus sanguinis SK1058]
 gi|328945187|gb|EGG39342.1| cell division protein FtsH [Streptococcus sanguinis SK1087]
 gi|332359483|gb|EGJ37302.1| cell division protein FtsH [Streptococcus sanguinis SK1056]
 gi|332363619|gb|EGJ41400.1| cell division protein FtsH [Streptococcus sanguinis SK1059]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|15612666|ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
 gi|10172715|dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
          Length = 813

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A +A++ A+R R R     A L+D   P  + + +GPTGVGKT ++R +A
Sbjct: 508 LHKRVIGQEEAVKAISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARAVA 561

Query: 75  R-LAG--APFIKVEVTKFTE-----------IGYVGRN 98
             L G    FI+++++++ E            GYVG +
Sbjct: 562 ETLFGDEDAFIRIDMSEYMEKHATSRLVGSPPGYVGHD 599


>gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 622

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GP G GKT +++ +A   G  FI+V  T+   +G +    E  IRDL  +A
Sbjct: 75  PRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATEL--VGGMSGESESKIRDLFQLA 130


>gi|302306487|ref|NP_982906.2| ABL041Wp [Ashbya gossypii ATCC 10895]
 gi|299788539|gb|AAS50730.2| ABL041Wp [Ashbya gossypii ATCC 10895]
          Length = 818

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 366 IPRGAILSGPPGTGKTLLAKATAGEAGVPFFSVSGSEFVEM-FVGIGASR-VRDLFKTA 422


>gi|284034333|ref|YP_003384264.1| ATP-dependent metalloprotease FtsH [Kribbella flavida DSM 17836]
 gi|283813626|gb|ADB35465.1| ATP-dependent metalloprotease FtsH [Kribbella flavida DSM 17836]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPKGVLLYGQPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|226506966|ref|NP_001150600.1| LOC100284233 [Zea mays]
 gi|195640484|gb|ACG39710.1| 26S protease regulatory subunit 6B [Zea mays]
 gi|224031009|gb|ACN34580.1| unknown [Zea mays]
 gi|224034215|gb|ACN36183.1| unknown [Zea mays]
          Length = 420

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 174 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 228

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 229 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|197104768|ref|YP_002130145.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Phenylobacterium zucineum HLK1]
 gi|196478188|gb|ACG77716.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Phenylobacterium zucineum HLK1]
          Length = 771

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           +++  +L R + GQ +A   ++ A++         A LRD   P    L  GPTG GKT 
Sbjct: 454 KQLEGDLKRAVYGQDEAIEQLSAAMK------MARAGLRDANKPIGCYLFTGPTGTGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
            +R+LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 508 TARQLAGTLGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVD 558


>gi|189235957|ref|XP_969110.2| PREDICTED: similar to AGAP006949-PA [Tribolium castaneum]
          Length = 771

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 319 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDLFSMA 375


>gi|169342349|ref|ZP_02863416.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169299574|gb|EDS81637.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 713

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|156355121|ref|XP_001623522.1| predicted protein [Nematostella vectensis]
 gi|156210232|gb|EDO31422.1| predicted protein [Nematostella vectensis]
          Length = 640

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK  V      L++  R  QL A +     PK  LLVGP G GKT +++ +A  
Sbjct: 179 VAGMQEAKMEVMEFVDYLKSAGRYTQLGAKI-----PKGALLVGPPGTGKTLLAKAVATE 233

Query: 77  AGAPFIKVEVTKFTEI 92
           A  PF+ +  + F E+
Sbjct: 234 ADVPFLSMAGSDFVEM 249


>gi|157827821|ref|YP_001496885.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
 gi|157803125|gb|ABV79848.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|118382640|ref|XP_001024476.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|89306243|gb|EAS04231.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 884

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK+ V      L++  + + L A      MPK  LL GP G GKT +++  A  
Sbjct: 399 VAGQAEAKKEVMEFVDFLKHPSKYEGLGAK-----MPKGALLTGPPGTGKTLLAKACAGE 453

Query: 77  AGAPFIKVEVTKFTEIGYVG 96
           +G PF  +  + F ++ YVG
Sbjct: 454 SGVPFFFMSGSDFVQM-YVG 472


>gi|332364177|gb|EGJ41954.1| cell division protein FtsH [Streptococcus sanguinis SK49]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R R  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 207 LKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 260

Query: 94  YVG 96
           +VG
Sbjct: 261 FVG 263


>gi|282863732|ref|ZP_06272790.1| ATP-dependent chaperone ClpB [Streptomyces sp. ACTE]
 gi|282561433|gb|EFB66977.1| ATP-dependent chaperone ClpB [Streptomyces sp. ACTE]
          Length = 866

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL R +IGQ +A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 568 SELGRRLIGQTEAVRAVSDAVR-RTR-----AGIADPDRPTGSFLFLGPTGVGKTELAKA 621

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          I++++++++E   V R V
Sbjct: 622 LADFLFDDERAMIRIDMSEYSEKHSVARLV 651


>gi|160916167|ref|ZP_02078374.1| hypothetical protein EUBDOL_02194 [Eubacterium dolichum DSM 3991]
 gi|158431891|gb|EDP10180.1| hypothetical protein EUBDOL_02194 [Eubacterium dolichum DSM 3991]
          Length = 663

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 195 IPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASR-VRDMFKKA 251


>gi|328790710|ref|XP_003251449.1| PREDICTED: 26S protease regulatory subunit 6B isoform 1 [Apis
           mellifera]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 171 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 225

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 226 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|72384010|ref|YP_293364.1| FtsH-2 peptidase [Ralstonia eutropha JMP134]
 gi|72123353|gb|AAZ65507.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Ralstonia
           eutropha JMP134]
          Length = 646

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  AG PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLLGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFNQA 260


>gi|90424815|ref|YP_533185.1| ATPase AAA-2 [Rhodopseudomonas palustris BisB18]
 gi|90106829|gb|ABD88866.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris BisB18]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L R + GQ  A  A+A +++         A LR+   P  + L  GPTGVGKT 
Sbjct: 458 KHLETTLKRVVFGQDKAIEALAASIKLAR------AGLREPEKPIGSYLFSGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   I+ +++++ E            GYVG +   ++ D VD
Sbjct: 512 VAKQLAASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 562


>gi|328790712|ref|XP_393513.3| PREDICTED: 26S protease regulatory subunit 6B isoform 2 [Apis
           mellifera]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 161 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 215

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 216 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 241


>gi|291243014|ref|XP_002741400.1| PREDICTED: YME1-like 1-like [Saccoglossus kowalevskii]
          Length = 680

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT ++R +A  A  PF     ++F  + +VG    + +RDL
Sbjct: 293 LPKGVLLVGPPGTGKTLLARAVAGEADVPFFYASGSEFDNM-FVGSGARR-VRDL 345


>gi|258545944|ref|ZP_05706178.1| AAA family ATPase [Cardiobacterium hominis ATCC 15826]
 gi|258518822|gb|EEV87681.1| AAA family ATPase [Cardiobacterium hominis ATCC 15826]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+ ILL GP G GKT I+R +A  +G  FI    T   + GY G++  Q++++L
Sbjct: 540 IPRGILLYGPPGTGKTQIARTMANESGLSFIGAS-TADMKAGYTGQS-GQLVKEL 592



 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 15/81 (18%)

Query: 37  RWRRQQLPADLRDEL-------------MPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           RW +  LP  L++ +               + ILL GP G GK+ I+R LA      FI 
Sbjct: 267 RWAKVCLPEALKENIRQLGDAFVTGESSAAQGILLYGPPGTGKSLIARTLADTLDCAFIA 326

Query: 84  VEVT--KFTEIGYVGRNVEQI 102
           V +   K   IG  G+ V+++
Sbjct: 327 VTLHDLKGRYIGESGQKVKEV 347


>gi|215408559|emb|CAR31129.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV 109


>gi|170078948|ref|YP_001735586.1| endopeptidase Clp ATP-binding chain B1 [Synechococcus sp. PCC 7002]
 gi|169886617|gb|ACB00331.1| endopeptidase Clp ATP-binding chain B1 [Synechococcus sp. PCC 7002]
          Length = 864

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R ++GQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ 
Sbjct: 570 AELHRRVVGQEEAVTAVAEAI------QRSRAGLADPNRPTASFIFLGPTGVGKTELAKA 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA+         ++++++++ E   V R
Sbjct: 624 LAQFLFDTEEALVRIDMSEYMEKHAVSR 651


>gi|163742883|ref|ZP_02150267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
 gi|161383847|gb|EDQ08232.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
          Length = 766

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ A++         A LR+   P  N L  GPTGVGKT ++++LA
Sbjct: 459 LKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 512

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 513 DTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 563


>gi|160871571|ref|ZP_02061703.1| ATP-dependent metallopeptidase HflB [Rickettsiella grylli]
 gi|159120370|gb|EDP45708.1| ATP-dependent metallopeptidase HflB [Rickettsiella grylli]
          Length = 642

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLMGPPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|15603922|ref|NP_220437.1| cell division protein FTSH (ftsH) [Rickettsia prowazekii str.
           Madrid E]
 gi|6225392|sp|Q9ZEA2|FTSH_RICPR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3860613|emb|CAA14514.1| CELL DIVISION PROTEIN FTSH (ftsH) [Rickettsia prowazekii]
 gi|292571639|gb|ADE29554.1| ATP-dependent metalloprotease FtsH [Rickettsia prowazekii Rp22]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|116510861|ref|YP_808077.1| FtsH-2 peptidase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106515|gb|ABJ71655.1| membrane protease FtsH catalytic subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|157827939|ref|YP_001494181.1| cell division protein ftsH [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932628|ref|YP_001649417.1| cell division protein [Rickettsia rickettsii str. Iowa]
 gi|157800420|gb|ABV75673.1| cell division protein ftsH [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907715|gb|ABY72011.1| cell division protein [Rickettsia rickettsii str. Iowa]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|332018612|gb|EGI59193.1| 26S protease regulatory subunit 6B [Acromyrmex echinatior]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 171 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 225

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 226 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|313899836|ref|ZP_07833339.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312955451|gb|EFR37116.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 195 IPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASR-VRDMFKKA 251


>gi|308272839|emb|CBX29443.1| ATP-dependent Clp protease ATP-binding subunit clpA [uncultured
           Desulfobacterium sp.]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + + + + GQ DA +++  +++ R R     A L     P  + L  GPTGVGKT ++R+
Sbjct: 452 NNIKKVVFGQDDAIKSLVTSIK-RSR-----AGLGIACHPIGSFLFTGPTGVGKTEVARQ 505

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           +A + G  F++ +++++ E   V R
Sbjct: 506 IAGIMGIEFMRFDMSEYMEKHTVAR 530


>gi|253681744|ref|ZP_04862541.1| ATP-dependent chaperone protein ClpB [Clostridium botulinum D str.
           1873]
 gi|253561456|gb|EES90908.1| ATP-dependent chaperone protein ClpB [Clostridium botulinum D str.
           1873]
          Length = 876

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 12/88 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ++A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 582 ELKKRVIGQEEATVAVSNAVIRAR-------AGLKDERRPIGSFIFLGPTGVGKTELAKT 634

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LAR    +    I+++++++ E   V R
Sbjct: 635 LARNLFDSEDNIIRIDMSEYMEKHAVSR 662


>gi|269836987|ref|YP_003319215.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943100|sp|D1C2C6|FTSH2_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|269786250|gb|ACZ38393.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 652

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P+ +LL GP G GKT ++R LA  A A F  V  ++F E+ YVG
Sbjct: 192 IPRGVLLTGPPGTGKTLLTRALAGEARASFFSVSGSEFVEL-YVG 235


>gi|225870039|ref|YP_002745986.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi
           subsp. equi 4047]
 gi|225699443|emb|CAW92940.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Streptococcus equi subsp. equi 4047]
          Length = 750

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L +++IGQ DA   +A A+R       +P        P  + L VGPTGVGKT +S
Sbjct: 445 LAADLKKHVIGQDDAVDKIAKAIRRNRVGLGVPN------RPIGSFLFVGPTGVGKTELS 498

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ  
Sbjct: 499 KQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQVR 550

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   + K A  +   +F + L DG ++D +
Sbjct: 551 RNPYSLILLDEIEK-AHPDVMHMFLQVLDDGRLTDGQ 586


>gi|209881706|ref|XP_002142291.1| AFG3 ATP-dependent protease family protein [Cryptosporidium muris
           RN66]
 gi|209557897|gb|EEA07942.1| AFG3 ATP-dependent protease family protein [Cryptosporidium muris
           RN66]
          Length = 775

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F EI +VG
Sbjct: 337 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFIEI-FVG 380


>gi|192973027|gb|ACF06927.1| ATP binding ATPase ClpA [uncultured Roseobacter sp.]
          Length = 869

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ  A +AV+ A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 561 ELHARVIGQSAAVKAVSNAVR-RAR-----AGLNDESRPLGSFLFLGPTGVGKTELTKAV 614

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       A  +++++++F E   V R
Sbjct: 615 ANFLFDDDAAMVRIDMSEFMEKHSVSR 641


>gi|162448687|ref|YP_001611054.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943089|sp|A9GRC9|FTSH1_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|161159269|emb|CAN90574.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 619

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT ++R +A  A  PF  +  ++F E+ +VG    + +R+L + A
Sbjct: 195 IPRGLLLIGPPGTGKTLLARAVAGEANVPFFSLNASEFVEM-FVGLGAAR-VRELFEEA 251


>gi|157964108|ref|YP_001498932.1| ATP-dependent metalloprotease FtsH [Rickettsia massiliae MTU5]
 gi|157843884|gb|ABV84385.1| ATP-dependent metalloprotease FtsH [Rickettsia massiliae MTU5]
          Length = 639

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|110800032|ref|YP_695032.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|123344991|sp|Q0TTK8|FTSH_CLOP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110674679|gb|ABG83666.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|51473298|ref|YP_067055.1| cell division protein FtsH [Rickettsia typhi str. Wilmington]
 gi|81390274|sp|Q68XR9|FTSH_RICTY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|51459610|gb|AAU03573.1| cell division protein FtsH [Rickettsia typhi str. Wilmington]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A+ AG  F     ++F E+ YVG
Sbjct: 218 LPKGALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEM-YVG 261


>gi|331082536|ref|ZP_08331661.1| hypothetical protein HMPREF0992_00585 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400514|gb|EGG80144.1| hypothetical protein HMPREF0992_00585 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT   S R  ++ ++L + +IGQ +A  AVA A++ R R       L+D   P  + LL
Sbjct: 487 KLTEGESKRLAKLENQLHKRVIGQDEAVTAVAKAIK-RGR-----VGLKDPKRPIGSFLL 540

Query: 59  VGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT +S+ LA          I+V+++++ E            GYVG
Sbjct: 541 LGPTGVGKTELSKALAEAVFGSEDAMIRVDMSEYMEKHSVSKLIGSPPGYVG 592


>gi|319942667|ref|ZP_08016974.1| ATP-dependent metalloprotease FtsH [Sutterella wadsworthensis
           3_1_45B]
 gi|319803750|gb|EFW00685.1| ATP-dependent metalloprotease FtsH [Sutterella wadsworthensis
           3_1_45B]
          Length = 671

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLLVGSPGTGKTLLAKAIAGEAGVPFFTISGSDFVEM-FVGVGAAR-VRDMFETA 245


>gi|229821882|ref|YP_002883408.1| ATPase AAA-2 domain protein [Beutenbergia cavernae DSM 12333]
 gi|229567795|gb|ACQ81646.1| ATPase AAA-2 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 843

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + I+GQ+ A +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRIVGQEAAVKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT ++R LA          I++++++F+E   V R
Sbjct: 547 FAGPTGVGKTLLARTLAEFLFGDEDALIQLDMSEFSEKHTVSR 589


>gi|255565346|ref|XP_002523664.1| 26S protease regulatory subunit 6b, putative [Ricinus communis]
 gi|223537064|gb|EEF38699.1| 26S protease regulatory subunit 6b, putative [Ricinus communis]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 169 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 223

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 224 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|196010816|ref|XP_002115272.1| hypothetical protein TRIADDRAFT_59287 [Trichoplax adhaerens]
 gi|190582043|gb|EDV22117.1| hypothetical protein TRIADDRAFT_59287 [Trichoplax adhaerens]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ +LL G  G GKT I++  AR AG  FI ++++  T+  Y
Sbjct: 129 PRGVLLYGNPGCGKTMIAKATARAAGCHFINLQISTLTDKWY 170


>gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel]
 gi|157784493|gb|ABV72994.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|46447145|ref|YP_008510.1| endopeptidase ATP-binding chain clpC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400786|emb|CAF24235.1| probable endopeptidase ATP-binding chain clpC [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 847

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ+DA + V  A+R R R     AD++D   P    L +GPTGVGKT ++R LA
Sbjct: 531 LKEGIIGQEDAIKTVCRAIR-RSR-----ADIKDPNRPIGAFLFLGPTGVGKTLLARLLA 584

Query: 75  -RLAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V+++++ E   V R
Sbjct: 585 INMFGGEDALIQVDMSEYMEKFAVSR 610


>gi|309778160|ref|ZP_07673095.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914069|gb|EFP59874.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 195 IPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASR-VRDMFKKA 251


>gi|300121114|emb|CBK21495.2| unnamed protein product [Blastocystis hominis]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT ++R +A  A  PF  V  ++F EI  G   R V ++  D    A
Sbjct: 6   PTGVLLTGPPGTGKTLLARAIAGEASVPFFFVSGSEFDEIFVGMGARRVRKLFEDARKHA 65

Query: 111 INIV 114
             IV
Sbjct: 66  PCIV 69


>gi|293977749|ref|YP_003543179.1| ATP-dependent metalloprotease FtsH [Candidatus Sulcia muelleri
           DMIN]
 gi|310946764|sp|D5D8E3|FTSH_SULMD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|292667680|gb|ADE35315.1| ATP-dependent metalloprotease FtsH [Candidatus Sulcia muelleri
           DMIN]
          Length = 619

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL  +A
Sbjct: 216 IPKGALLIGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFYIA 272


>gi|169351461|ref|ZP_02868399.1| hypothetical protein CLOSPI_02241 [Clostridium spiroforme DSM 1552]
 gi|169291683|gb|EDS73816.1| hypothetical protein CLOSPI_02241 [Clostridium spiroforme DSM 1552]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVG 96
           +VG
Sbjct: 242 FVG 244


>gi|168217957|ref|ZP_02643582.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|182380014|gb|EDT77493.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|168206716|ref|ZP_02632721.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211698|ref|ZP_02637323.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170661854|gb|EDT14537.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710347|gb|EDT22529.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|161833637|ref|YP_001597833.1| putative ATP-dependent metalloprotease [Candidatus Sulcia muelleri
           GWSS]
 gi|152206126|gb|ABS30436.1| putative ATP-dependent metalloprotease [Candidatus Sulcia muelleri
           GWSS]
          Length = 624

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL  +A
Sbjct: 221 IPKGALLIGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFYIA 277


>gi|20129423|ref|NP_609373.1| no mitochondrial derivative [Drosophila melanogaster]
 gi|7297651|gb|AAF52903.1| no mitochondrial derivative [Drosophila melanogaster]
 gi|21428856|gb|AAM50147.1| GH08677p [Drosophila melanogaster]
 gi|220944032|gb|ACL84559.1| nmd-PA [synthetic construct]
 gi|220960334|gb|ACL92703.1| nmd-PA [synthetic construct]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 173


>gi|1709798|sp|P54778|PRS6B_SOLTU RecName: Full=26S protease regulatory subunit 6B homolog
 gi|1155334|gb|AAB67835.1| POTATP1 [Solanum tuberosum]
          Length = 413

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 167 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|9506353|emb|CAB99462.1| putative ATPases [Homo sapiens]
          Length = 517

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK ILLVGP G GKT ++R +A  A  PF     ++F E+ +VG    +I
Sbjct: 117 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGATRI 166


>gi|330040472|ref|XP_003239927.1| 26S proteasome SU [Cryptomonas paramecium]
 gi|327206853|gb|AEA39029.1| 26S proteasome SU [Cryptomonas paramecium]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           PK +L+ GP G GKT ++R +A  A   FIKV  ++  +  IG  G+ +  I +   D +
Sbjct: 175 PKGVLMYGPPGTGKTLLARAVAYHANCTFIKVSSSELVQKYIGEGGKMIRNIFKMAKDYS 234

Query: 111 INIV 114
            +IV
Sbjct: 235 PSIV 238


>gi|321470123|gb|EFX81100.1| hypothetical protein DAPPUDRAFT_303592 [Daphnia pulex]
          Length = 351

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           ++  P+ L     PK ILL GP G GKT +++  A+ AG  FI ++ +  T+  Y
Sbjct: 105 KKHFPSQLLQP--PKGILLHGPPGCGKTMVAKATAKEAGMRFINLDASTLTDKWY 157


>gi|260589120|ref|ZP_05855033.1| negative regulator of genetic competence ClpC/MecB [Blautia
           hansenii DSM 20583]
 gi|260540540|gb|EEX21109.1| negative regulator of genetic competence ClpC/MecB [Blautia
           hansenii DSM 20583]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT   S R  ++ ++L + +IGQ +A  AVA A++ R R       L+D   P  + LL
Sbjct: 487 KLTEGESKRLAKLENQLHKRVIGQDEAVTAVAKAIK-RGR-----VGLKDPKRPIGSFLL 540

Query: 59  VGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT +S+ LA          I+V+++++ E            GYVG
Sbjct: 541 LGPTGVGKTELSKALAEAVFGSEDAMIRVDMSEYMEKHSVSKLIGSPPGYVG 592


>gi|182625752|ref|ZP_02953520.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177909014|gb|EDT71496.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|125622902|ref|YP_001031385.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491710|emb|CAL96629.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069640|gb|ADJ59040.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|115920164|ref|XP_783782.2| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Strongylocentrotus purpuratus]
 gi|115949155|ref|XP_001184581.1| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Strongylocentrotus purpuratus]
          Length = 792

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G ++AK  + +   N  +  Q  ADL  ++ PK  +L GP G GKT +++  A  A  
Sbjct: 305 VAGCEEAKLEI-MEFVNFLKNPQKYADLGAKI-PKGAILSGPPGTGKTLLAKATAGEANV 362

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 363 PFITVNGSEFLEM-FVGVGPSR-VRDMFAMA 391


>gi|18033709|gb|AAL57218.1|AF361493_1 FNP001 [Homo sapiens]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++    T+  Y
Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPRTLTDKWY 167


>gi|67458531|ref|YP_246155.1| ATP-dependent metalloprotease FtsH [Rickettsia felis URRWXCal2]
 gi|75537002|sp|Q4UN68|FTSH_RICFE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|67004064|gb|AAY60990.1| ATP-dependent metalloprotease FtsH [Rickettsia felis URRWXCal2]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|56479246|ref|YP_160835.1| ClpB protein [Aromatoleum aromaticum EbN1]
 gi|56315289|emb|CAI09934.1| ClpB protein [Aromatoleum aromaticum EbN1]
          Length = 860

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A R VA A+R R R     A L DE  P  + L +GPTGVGKT + + LA
Sbjct: 568 LHQRVVGQDEAVRLVADAIR-RSR-----AGLSDENRPYGSFLFLGPTGVGKTELCKTLA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 622 EFLFDSEEHLIRIDMSEFMEKHSVAR 647


>gi|85709773|ref|ZP_01040838.1| ATPase [Erythrobacter sp. NAP1]
 gi|85688483|gb|EAQ28487.1| ATPase [Erythrobacter sp. NAP1]
          Length = 801

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   + GQ +A   ++ A++         A LRD   P  + L  GPTGVGKT ++R+L
Sbjct: 465 DLKHVVFGQDEAITRLSTAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARQL 518

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A + G    + +++++ E            GYVG +   ++ D VD   + V
Sbjct: 519 ASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHCV 570


>gi|295094990|emb|CBK84081.1| ATPases with chaperone activity, ATP-binding subunit [Coprococcus
           sp. ART55/1]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL + ++GQ++A  AV+ A++ R R       L+D   P  + L +GPTGVGKT +S+ 
Sbjct: 509 SELHKRVVGQEEAVTAVSRAIK-RSR-----VGLKDPKRPMGSFLFLGPTGVGKTELSKA 562

Query: 73  LARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           LA +        I+V+++++ E            GYVG
Sbjct: 563 LADIVFGSEDALIRVDMSEYMEKHSVSKMIGSPPGYVG 600


>gi|238650510|ref|YP_002916362.1| cell division protein ftsH [Rickettsia peacockii str. Rustic]
 gi|238624608|gb|ACR47314.1| cell division protein ftsH [Rickettsia peacockii str. Rustic]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|195339735|ref|XP_002036472.1| GM11802 [Drosophila sechellia]
 gi|194130352|gb|EDW52395.1| GM11802 [Drosophila sechellia]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 173


>gi|126179255|ref|YP_001047220.1| proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
 gi|125862049|gb|ABN57238.1| Proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
          Length = 390

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I++ +AR + A FI++  ++     Y+G    Q++R+L  +A
Sbjct: 170 PKGILLYGPPGTGKTLIAKAVARQSQARFIRMSGSELVH-KYIGEGA-QLVRELFILA 225


>gi|240103602|ref|YP_002959911.1| DNA helicase TIP49-like protein, TBP-interacting protein (Tip49)
          [Thermococcus gammatolerans EJ3]
 gi|239911156|gb|ACS34047.1| DNA helicase TIP49-like protein, TBP-interacting protein (Tip49)
          [Thermococcus gammatolerans EJ3]
          Length = 441

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA+             R +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 40 MVGQVKAREAAGIAVE---------LIKRGKLAGKGILLVGPTGSGKTAIAMGIARELGE 90

Query: 79 -APFIKV 84
            PF+++
Sbjct: 91 DVPFVQI 97


>gi|237735419|ref|ZP_04565900.1| cell division protein ftsH [Mollicutes bacterium D7]
 gi|229381164|gb|EEO31255.1| cell division protein ftsH [Coprobacillus sp. D7]
          Length = 654

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+   A
Sbjct: 242 FVGVGAGR-VRDMFKKA 257


>gi|225377785|ref|ZP_03755006.1| hypothetical protein ROSEINA2194_03436 [Roseburia inulinivorans DSM
           16841]
 gi|225210369|gb|EEG92723.1| hypothetical protein ROSEINA2194_03436 [Roseburia inulinivorans DSM
           16841]
          Length = 818

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ + L + ++GQ++A  AVA A+R R R       L+D   P  + L +GPTGVGKT 
Sbjct: 508 KKLEATLHKRVVGQEEAVTAVAKAVR-RGR-----VGLKDPRRPIGSFLFLGPTGVGKTE 561

Query: 69  ISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           IS+ LA          I+V+++++ E            GYVG
Sbjct: 562 ISKALAEAVFGNEQAMIRVDMSEYMEKHSVSKMIGSPPGYVG 603


>gi|220904697|ref|YP_002480009.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868996|gb|ACL49331.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 832

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 45  ADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           A L  E  P    L  GPTGVGKT ++R LA+L G  F++ +++++ E   V R
Sbjct: 492 AGLGQEQRPAGAFLFYGPTGVGKTEVARSLAKLMGVEFLRYDMSEYMEKHAVSR 545


>gi|195473583|ref|XP_002089072.1| GE26152 [Drosophila yakuba]
 gi|194175173|gb|EDW88784.1| GE26152 [Drosophila yakuba]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 173


>gi|10178061|dbj|BAB11425.1| unnamed protein product [Arabidopsis thaliana]
          Length = 871

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 348 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 391


>gi|18309580|ref|NP_561514.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168214787|ref|ZP_02640412.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|18144257|dbj|BAB80304.1| cell division protein [Clostridium perfringens str. 13]
 gi|170713759|gb|EDT25941.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|157825193|ref|YP_001492913.1| cell division protein ftsH [Rickettsia akari str. Hartford]
 gi|157799151|gb|ABV74405.1| cell division protein ftsH [Rickettsia akari str. Hartford]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 241


>gi|260654670|ref|ZP_05860160.1| negative regulator of genetic competence ClpC/MecB [Jonquetella
           anthropi E3_33 E1]
 gi|260630686|gb|EEX48880.1| negative regulator of genetic competence ClpC/MecB [Jonquetella
           anthropi E3_33 E1]
          Length = 826

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 23/99 (23%)

Query: 14  SELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           S +++++IGQ +A   V  ALR NR       + L+DE  P  + L +GP+GVGKT ++R
Sbjct: 511 SRVEKHLIGQSEAVSCVCRALRRNR-------SGLQDEKRPIGSFLFLGPSGVGKTELAR 563

Query: 72  RLAR-LAGA--PFIKVEVTKF-----------TEIGYVG 96
            +AR L G+    I +++++F           T  GYVG
Sbjct: 564 VVARELYGSDKALIALDMSEFHDRYTVSRLIGTGPGYVG 602


>gi|229825793|ref|ZP_04451862.1| hypothetical protein GCWU000182_01156 [Abiotrophia defectiva ATCC
           49176]
 gi|229790356|gb|EEP26470.1| hypothetical protein GCWU000182_01156 [Abiotrophia defectiva ATCC
           49176]
          Length = 672

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK   R +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 188 VAGEDEAKDSLREMVDFLHNPRKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 242

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 243 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 274


>gi|221128717|ref|XP_002157935.1| PREDICTED: similar to Caseinolytic peptidase B protein homolog
           [Hydra magnipapillata]
          Length = 551

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 21/92 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL--- 76
           I+GQQ A +AV+ A+R   RRQ       D+  P   L +G +G+GKT ++++LAR    
Sbjct: 203 IVGQQGAIQAVSSAIR---RRQN---GWVDDQHPLVFLFLGSSGIGKTELAKQLARFLHK 256

Query: 77  -AGAPFIKVEVTKFTE-----------IGYVG 96
                FI+++++++ E            GYVG
Sbjct: 257 DVEKSFIRLDMSEYQEKHEVSKLIGSPPGYVG 288


>gi|218681729|ref|ZP_03529522.1| ATP-dependent chaperone ClpB [Rhizobium etli CIAT 894]
          Length = 552

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 461 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 514

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 515 ARFLFDDETAMVRMDMSEYMEKHSVAR 541


>gi|110803260|ref|YP_697892.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683761|gb|ABG87131.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 713

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 198 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFKQA 254


>gi|50292031|ref|XP_448448.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527760|emb|CAG61409.1| unnamed protein product [Candida glabrata]
          Length = 745

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 310 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRELFSQA 366


>gi|332022435|gb|EGI62743.1| ATPase family AAA domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 378

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           +R++L  D +    PK +LL GP G GKT +++  AR A   FI ++V+  T+  Y
Sbjct: 118 QRKELFEDSQLTQAPKGVLLYGPPGCGKTMMAKATAREAKTRFINLDVSILTDKWY 173


>gi|288957829|ref|YP_003448170.1| cell division protease [Azospirillum sp. B510]
 gi|288910137|dbj|BAI71626.1| cell division protease [Azospirillum sp. B510]
          Length = 645

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LLVGP G GKT  +R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 188 IPKGCLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242


>gi|269468931|gb|EEZ80515.1| ATP-dependent Zn protease [uncultured SUP05 cluster bacterium]
          Length = 641

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 183 IPKGVLMVGPPGTGKTLLAKAIAGEADVPFFFISGSDFVEM-FVGVGASR-VRDMFEQA 239


>gi|225431489|ref|XP_002274730.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 848

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 341 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 384


>gi|156100021|ref|XP_001615738.1| ATP-dependent metalloprotease [Plasmodium vivax SaI-1]
 gi|148804612|gb|EDL46011.1| ATP-dependent metalloprotease, putative [Plasmodium vivax]
          Length = 702

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT I+R +A  A  PF++   ++F E+ +VG    + IR+L   A
Sbjct: 282 LPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFEEM-FVGVGARR-IRELFQAA 338


>gi|78188369|ref|YP_378707.1| peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
 gi|78170568|gb|ABB27664.1| Peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
          Length = 662

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 241 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSMSGADFVEM-FVGVGASR-VRDLFEQA 297


>gi|20129529|ref|NP_609721.1| CG4701 [Drosophila melanogaster]
 gi|7298175|gb|AAF53410.1| CG4701 [Drosophila melanogaster]
 gi|201066133|gb|ACH92476.1| FI08533p [Drosophila melanogaster]
          Length = 384

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|295703385|ref|YP_003596460.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
           megaterium DSM 319]
 gi|294801044|gb|ADF38110.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
           megaterium DSM 319]
          Length = 704

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L + +IGQQ+A   VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 406 KHLAEHLAQKVIGQQEAVEKVAKAIR-RSR-----AGLKAKHRPIGSFLFVGPTGVGKTE 459

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +++ LA  L G+    ++++++++ E            GYVG 
Sbjct: 460 LTKTLAEELFGSKDAMVRLDMSEYMEKHAVSKLIGSPPGYVGH 502


>gi|294142195|ref|YP_003558173.1| clpB protein [Shewanella violacea DSS12]
 gi|293328664|dbj|BAJ03395.1| clpB protein [Shewanella violacea DSS12]
          Length = 857

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHQTVIGQNEAVDAVSNAIR-RSR-----AGLADPERPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +      A  +++++++F E   V R
Sbjct: 620 KFLFDTEAAMVRIDMSEFMEKHSVAR 645


>gi|262279296|ref|ZP_06057081.1| ATPase with chaperone activity [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259647|gb|EEY78380.1| ATPase with chaperone activity [Acinetobacter calcoaceticus
           RUH2202]
          Length = 758

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+  A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALGSAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|255717022|ref|XP_002554792.1| KLTH0F13904p [Lachancea thermotolerans]
 gi|238936175|emb|CAR24355.1| KLTH0F13904p [Lachancea thermotolerans]
          Length = 739

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL + A
Sbjct: 300 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDLFENA 356


>gi|147919569|ref|YP_686691.1| AAA family ATPase [uncultured methanogenic archaeon RC-I]
 gi|110622087|emb|CAJ37365.1| ATPase (AAA superfamily) [uncultured methanogenic archaeon RC-I]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +KL   F+P ++  ++D  ++  +       I    ++R       LR+      +L VG
Sbjct: 165 LKLVHVFAPEDVNQKIDDIVLTPEQEAEVEKIVKAIQYRDYLRKIGLRE---IGKLLFVG 221

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           P G GKT+ +R ++   G PF++V+++  T   +G   +N++++ 
Sbjct: 222 PPGTGKTSTARAMSARLGLPFLEVKLSMITSQYLGETSKNIDKVF 266


>gi|109947115|ref|YP_664343.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           acinonychis str. Sheeba]
 gi|109714336|emb|CAJ99344.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           acinonychis str. Sheeba]
          Length = 856

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 12/91 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I  EL + ++GQ+ A +A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 562 IERELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA+    +    I+++++++ E   + R
Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645


>gi|332830055|gb|EGK02683.1| tRNA dimethylallyltransferase 2 [Dysgonomonas gadei ATCC BAA-286]
          Length = 304

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIGYVGRNVEQI 102
           M + I+L+GPTGVGKTA+S  LA    +P I  +  +F    EIG      EQ+
Sbjct: 1   MKQLIVLLGPTGVGKTALSLNLAEYYHSPVISADSRQFFKGLEIGTAAPTTEQL 54


>gi|326429238|gb|EGD74808.1| caseinolytic protease C [Salpingoeca sp. ATCC 50818]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 27/104 (25%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L +Y++GQ     AVA A+R R           DE  P   L +G +GVGKT +++RLA+
Sbjct: 288 LHQYVVGQDGPIMAVAAAVRRR------ENGWHDEDHPLVFLFLGSSGVGKTELAKRLAQ 341

Query: 76  LA----------GAPFIKVEVTKFTE-----------IGYVGRN 98
                          FI++++T++ E            GYVG +
Sbjct: 342 YIHHDEKATSNRSKGFIRLDMTEYQEKHEAAKLIGAPPGYVGHD 385


>gi|315453884|ref|YP_004074154.1| ATP-dependent CLP protease ATP-binding subunit [Helicobacter felis
           ATCC 49179]
 gi|315132936|emb|CBY83564.1| ATP-dependent CLP protease ATP-binding subunit,Chaperone protein
           clpB [Helicobacter felis ATCC 49179]
          Length = 858

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 23/101 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I  EL + ++GQ++A  A+A A+ RN+       A L D   P  + L +GPTGVGKT  
Sbjct: 565 IEEELRKSVVGQENAILAIAKAIKRNK-------AGLDDSTRPIGSFLFLGPTGVGKTQS 617

Query: 70  SRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA+    +   FI+++++++ E            GYVG
Sbjct: 618 AKTLAKFLFDSQKNFIRLDMSEYMEKHAASRLVGAPPGYVG 658


>gi|314055104|ref|YP_004063442.1| putative cell division protein FtsH2 [Ostreococcus tauri virus 2]
 gi|313574995|emb|CBI70008.1| putative cell division protein FtsH2 [Ostreococcus tauri virus 2]
          Length = 586

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL G  G GKT ++R +A  +  PFI+     F E+ +VG   ++ +RDL ++A
Sbjct: 176 IPRGALLAGKPGTGKTLLARAIAGESNVPFIQCSAANFVEM-FVGVGAKR-VRDLFEIA 232


>gi|307172856|gb|EFN64061.1| 26S protease regulatory subunit 6B [Camponotus floridanus]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 161 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 215

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 216 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 241


>gi|256081532|ref|XP_002577023.1| vesicular-fusion protein nsf [Schistosoma mansoni]
 gi|238662316|emb|CAZ33260.1| vesicular-fusion protein nsf, putative [Schistosoma mansoni]
          Length = 743

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           P  +LL GP   GKTA++  +ARL+G PF+K+ VT    IG+ 
Sbjct: 538 PLTLLLEGPPKAGKTALAVEIARLSGFPFVKI-VTSHKMIGFT 579


>gi|303271571|ref|XP_003055147.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463121|gb|EEH60399.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 941

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +PK +LL GP G GKT ++R +A  AG PF     ++F E  +G   + V Q+ 
Sbjct: 472 LPKGVLLSGPPGTGKTLLARAVAGEAGVPFFYRAGSEFEEMFVGVGSKRVRQLF 525


>gi|254172711|ref|ZP_04879386.1| TIP49 C-terminal domain family protein [Thermococcus sp. AM4]
 gi|214033640|gb|EEB74467.1| TIP49 C-terminal domain family protein [Thermococcus sp. AM4]
          Length = 441

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA+             R +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 40 MVGQVKAREAAGIAVE---------LIKRGKLAGKGILLVGPTGSGKTAIAMGIARELGE 90

Query: 79 -APFIKV 84
            PF+++
Sbjct: 91 DVPFVQI 97


>gi|198474649|ref|XP_001356772.2| GA17379 [Drosophila pseudoobscura pseudoobscura]
 gi|198138483|gb|EAL33837.2| GA17379 [Drosophila pseudoobscura pseudoobscura]
          Length = 563

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           P+ +LL GP G GKT I++ +A  A A F  +  +  T   +VG   E++++ L  VA+
Sbjct: 323 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSTLTS-KWVGE-AEKLVKTLFAVAV 379


>gi|224531857|ref|ZP_03672489.1| cell division protein FtsH [Borrelia valaisiana VS116]
 gi|224511322|gb|EEF81728.1| cell division protein FtsH [Borrelia valaisiana VS116]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++ K+    V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A  
Sbjct: 174 VAGQEEVKQELYEVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260


>gi|21064183|gb|AAM29321.1| AT28104p [Drosophila melanogaster]
          Length = 384

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|19075513|ref|NP_588013.1| mitochondrial outer membrane ATPase Msp1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74698334|sp|Q9P7J5|YJNA_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein
           C24B10.10c
 gi|7160255|emb|CAB76219.1| mitochondrial outer membrane ATPase Msp1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 355

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY------------VGRNV 99
            PK +LL GP G GKT +++ LA+ + A FI V V   T+  +            + R +
Sbjct: 124 CPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKL 183

Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASINAE 131
           E  I   +D     +R+ +R +    A I AE
Sbjct: 184 EPTII-FIDEIDTFLRQRQRTDHEAMAQIKAE 214


>gi|261749631|ref|YP_003257317.1| putative heat shock ClpB protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497724|gb|ACX84174.1| putative heat shock ClpB protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA ++VA A+R R R     A L+DE  P  + L +G TGVGKT +++ L
Sbjct: 569 ELHKRVIGQNDAIQSVADAIR-RSR-----AGLQDEKKPIGSFLFMGSTGVGKTELAKTL 622

Query: 74  A 74
           A
Sbjct: 623 A 623


>gi|195474077|ref|XP_002089318.1| GE19049 [Drosophila yakuba]
 gi|194175419|gb|EDW89030.1| GE19049 [Drosophila yakuba]
          Length = 384

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|145354607|ref|XP_001421571.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581809|gb|ABO99864.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 547

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRD- 105
           PK ILL GP G GKT +++ +A  AG PF     ++F E+ +VG      RN+ +  R+ 
Sbjct: 97  PKGILLEGPPGTGKTLLAKAVAGEAGLPFFYANGSEFVEM-FVGVAASRMRNLFKRAREN 155

Query: 106 -----LVDVAINIVRESRRDEVREQASINAEERILDALV 139
                 +D    I R     E R+ ++   E+ ++  LV
Sbjct: 156 APSIIFIDELDTIGRARNAGEQRDSSTSEREQGLMQMLV 194


>gi|124266461|ref|YP_001020465.1| membrane protease FtsH catalytic subunit [Methylibium
           petroleiphilum PM1]
 gi|124259236|gb|ABM94230.1| membrane protease FtsH catalytic subunit [Methylibium
           petroleiphilum PM1]
          Length = 640

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 249


>gi|299769892|ref|YP_003731918.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           DR1]
 gi|298699980|gb|ADI90545.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           DR1]
          Length = 758

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+  A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALGSAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|167754849|ref|ZP_02426976.1| hypothetical protein CLORAM_00353 [Clostridium ramosum DSM 1402]
 gi|167704899|gb|EDS19478.1| hypothetical protein CLORAM_00353 [Clostridium ramosum DSM 1402]
          Length = 654

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+   A
Sbjct: 242 FVGVGAGR-VRDMFKKA 257


>gi|150401563|ref|YP_001325329.1| ATPase central domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014266|gb|ABR56717.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ +AK+   I ++          ++  E  PKNIL  G  G GKT ++R LA     
Sbjct: 127 VIGQNEAKKKCKIIMKYLEN-----PEIFGEWAPKNILFYGAPGTGKTLLARALATETDV 181

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T+   IG +VG   +QI
Sbjct: 182 PLYLIKATEL--IGDHVGDGSKQI 203


>gi|3450955|gb|AAC32612.1| ATPase homolog [Homo sapiens]
          Length = 418

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT    P  + +++    I +Q+ + AV + + +    +Q+  D      P+ +L+ G
Sbjct: 152 MMLTSGQKPDVMYADIGGMDIQKQEVREAVELPVTHFELYKQIGID-----PPRGVLMYG 206

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|30698050|ref|NP_201263.2| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332010540|gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 855

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 348 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 391


>gi|50545783|ref|XP_500430.1| YALI0B02574p [Yarrowia lipolytica]
 gi|49646296|emb|CAG82648.1| YALI0B02574p [Yarrowia lipolytica]
          Length = 763

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 300 IPRGAILSGPPGTGKTLVAKATAGEAGVPFLSVSGSEFMEM-FVGVGASR-VRDLFKQA 356


>gi|325119610|emb|CBZ55163.1| ATPase, AAA family protein, related [Neospora caninum Liverpool]
          Length = 605

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 47  LRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           LR EL       P+ ILL GP G GKT +++ +A  +GA F   EVT  + I       E
Sbjct: 346 LRPELHVGLHQAPRGILLFGPPGTGKTTLAKWMAASSGASFF--EVTPSSIISKFHGETE 403

Query: 101 QIIRDLVDVA 110
            +I+ L  VA
Sbjct: 404 TLIKALFKVA 413


>gi|260909906|ref|ZP_05916594.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635951|gb|EEX53953.1| ATP-dependent Clp protease subunit [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 753

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ  A   V  A+      Q   A L +E  P   +L VGPTGVGKT ++R LA   G
Sbjct: 456 IYGQNQAVELVTQAI------QTAKAGLTEEGKPLSAMLFVGPTGVGKTEVARVLAHELG 509

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              ++ +++++TE            GYVG     ++ D +    N V
Sbjct: 510 IELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKIPNCV 556


>gi|254474219|ref|ZP_05087610.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudovibrio
           sp. JE062]
 gi|211956749|gb|EEA91958.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudovibrio
           sp. JE062]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++R+LA
Sbjct: 478 LKRVVYGQDPAIEALSASIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQLA 531

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 532 STLGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVDQHPHCV 582


>gi|195578115|ref|XP_002078911.1| GD22279 [Drosophila simulans]
 gi|194190920|gb|EDX04496.1| GD22279 [Drosophila simulans]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 104 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 145


>gi|93006501|ref|YP_580938.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
 gi|92394179|gb|ABE75454.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           cryohalolentis K5]
          Length = 845

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 20/102 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + I+  LDR     + GQ +A   +A A++    R  L A   D+ +  + +  GPTGVG
Sbjct: 512 KSILQHLDRDLKHLVFGQDEAIATLADAIK--LSRAGLKAP--DKPI-GSFMFAGPTGVG 566

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           KT +SR+LA L G   ++ +++++ E            GYVG
Sbjct: 567 KTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVG 608


>gi|322378532|ref|ZP_08052980.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           suis HS1]
 gi|322379754|ref|ZP_08054064.1| ATP-dependent protease binding subunit (clpB) [Helicobacter suis
           HS5]
 gi|321147825|gb|EFX42415.1| ATP-dependent protease binding subunit (clpB) [Helicobacter suis
           HS5]
 gi|321149046|gb|EFX43498.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter
           suis HS1]
          Length = 855

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 23/98 (23%)

Query: 15  ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL++++IGQ+ A  A++ A+ RN+       A L D   P  + L +GPTGVGKT  ++ 
Sbjct: 566 ELEKHVIGQKTAISAISKAIKRNK-------AGLSDPNKPIGSFLFLGPTGVGKTESAKS 618

Query: 73  LARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           LAR    +    I+++++++ E            GYVG
Sbjct: 619 LARFLFDSQKNLIRLDMSEYMEKHAASRLVGAPPGYVG 656


>gi|320168906|gb|EFW45805.1| AFG3-like protein 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  AG PF+ +  ++F E+ +VG    + +RDL + A
Sbjct: 359 IPKGAVLSGPPGTGKTLLAKATAGEAGVPFLSISGSEFLEM-FVGVGSSR-VRDLFEQA 415


>gi|317123760|ref|YP_004097872.1| membrane protease FtsH catalytic subunit [Intrasporangium calvum
           DSM 43043]
 gi|315587848|gb|ADU47145.1| membrane protease FtsH catalytic subunit [Intrasporangium calvum
           DSM 43043]
          Length = 696

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 200 IPKGVLLYGQPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 256


>gi|292487321|ref|YP_003530193.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora CFBP1430]
 gi|291552740|emb|CBA19785.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora CFBP1430]
 gi|312171427|emb|CBX79686.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 857

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQQ+A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHTRVIGQQEAVEAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|262273641|ref|ZP_06051454.1| ClpB protein [Grimontia hollisae CIP 101886]
 gi|262222056|gb|EEY73368.1| ClpB protein [Grimontia hollisae CIP 101886]
          Length = 857

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ++A  +VA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHSRVIGQEEAVTSVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 AEFLFDSSDAMVRIDMSEFMEKHSVARLV 647


>gi|227874332|ref|ZP_03992517.1| M41 family endopeptidase FtsH [Oribacterium sinus F0268]
 gi|227839820|gb|EEJ50265.1| M41 family endopeptidase FtsH [Oribacterium sinus F0268]
          Length = 755

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 315 LPKGALLVGPPGTGKTLLAKAVAGEANVPFYSLSGSDFVEM-FVGVGASR-VRDL 367


>gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 806

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 32/207 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT I++ +A    A FI +     ++K+   G    N+ Q+  +   
Sbjct: 221 PKGVLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKY--YGESEGNLRQVFEEAQQ 278

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A  I+     D +   RE      E R+       +D L G+      A +N  +    
Sbjct: 279 NAPTIIFIDEIDSIAPKREDTKGEVERRVVAQLLALMDGLKGRGEVIVIAATNLPDALDP 338

Query: 154 KLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGSG----R 204
            LR G   D+EI+I + D +       +    +P    V + +LSE     +G+      
Sbjct: 339 ALRRGGRFDREIEIGIPDRNGREDIFKVHTRGVPLAEDVDLKDLSETTHGFVGADIALLV 398

Query: 205 KKKIRMSVQKCYPELMRDES--DRLID 229
           K+    +++K  P++  DE   D ++D
Sbjct: 399 KEAAMHALRKVIPKIKDDEGIPDEVLD 425


>gi|150004472|ref|YP_001299216.1| metalloprotease FtsH [Bacteroides vulgatus ATCC 8482]
 gi|149932896|gb|ABR39594.1| AAA-metalloprotease FtsH with ATPase domain [Bacteroides vulgatus
           ATCC 8482]
          Length = 668

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ +AK+ V   +    R+ Q   +L  ++ PK  LLVGP G GKT +++ +A  A  
Sbjct: 192 VAGQAEAKQEVE-EIVEFLRQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEADV 249

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PF  +  + F E+ +VG    + +RDL
Sbjct: 250 PFFSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|118591080|ref|ZP_01548479.1| endopeptidase Clp ATP-binding chain A [Stappia aggregata IAM 12614]
 gi|118436156|gb|EAV42798.1| endopeptidase Clp ATP-binding chain A [Stappia aggregata IAM 12614]
          Length = 815

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT ++R+L
Sbjct: 466 DLKRVVYGQDEAIGTLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQL 519

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   I+ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 ASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 571


>gi|15804760|ref|NP_290801.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 EDL933]
 gi|15834401|ref|NP_313174.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751479|ref|ZP_02776501.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4113]
 gi|168754740|ref|ZP_02779747.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4401]
 gi|168760410|ref|ZP_02785417.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4501]
 gi|168766448|ref|ZP_02791455.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774118|ref|ZP_02799125.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4196]
 gi|168780601|ref|ZP_02805608.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4076]
 gi|168784806|ref|ZP_02809813.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC869]
 gi|168801824|ref|ZP_02826831.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC508]
 gi|195935961|ref|ZP_03081343.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208806573|ref|ZP_03248910.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812724|ref|ZP_03254053.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819068|ref|ZP_03259388.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4042]
 gi|209400590|ref|YP_002273713.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4115]
 gi|217326156|ref|ZP_03442240.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. TW14588]
 gi|254796190|ref|YP_003081027.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. TW14359]
 gi|261225291|ref|ZP_05939572.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255457|ref|ZP_05947990.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|21263767|sp|Q8XDN3|MIAA_ECO57 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226700797|sp|B5Z2H7|MIAA_ECO5E RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|12519156|gb|AAG59367.1|AE005650_6 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364624|dbj|BAB38570.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O157:H7 str. Sakai]
 gi|187770326|gb|EDU34170.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014483|gb|EDU52605.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4113]
 gi|189001749|gb|EDU70735.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357893|gb|EDU76312.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4401]
 gi|189364314|gb|EDU82733.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4486]
 gi|189368991|gb|EDU87407.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4501]
 gi|189374757|gb|EDU93173.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC869]
 gi|189376077|gb|EDU94493.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC508]
 gi|208726374|gb|EDZ75975.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734001|gb|EDZ82688.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739191|gb|EDZ86873.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4042]
 gi|209161990|gb|ACI39423.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. EC4115]
 gi|209750288|gb|ACI73451.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli]
 gi|209750290|gb|ACI73452.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli]
 gi|209750292|gb|ACI73453.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli]
 gi|209750296|gb|ACI73455.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli]
 gi|217322377|gb|EEC30801.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. TW14588]
 gi|254595590|gb|ACT74951.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|320638929|gb|EFX08575.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. G5101]
 gi|320644298|gb|EFX13363.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H- str. 493-89]
 gi|320649616|gb|EFX18140.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H- str. H 2687]
 gi|320665788|gb|EFX32825.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O157:H7 str. LSU-61]
          Length = 316

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|13470854|ref|NP_102423.1| endopeptidase Clp ATP-binding chain A [Mesorhizobium loti
           MAFF303099]
 gi|14021597|dbj|BAB48209.1| endopeptidase Clp ATP-binding chain A [Mesorhizobium loti
           MAFF303099]
          Length = 822

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT ++++L
Sbjct: 470 ELKRVVYGQDTAITALTSAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQL 523

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   I+ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 524 AASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 575


>gi|307204193|gb|EFN83017.1| 26S protease regulatory subunit 6B [Harpegnathos saltator]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 125 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 179

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 180 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 205


>gi|300853811|ref|YP_003778795.1| putative cell division protein FtsH-like protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300433926|gb|ADK13693.1| predicted cell division protein FtsH-like protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 581

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK ILL G  G GKT ++R +A  A  PF  V  + F ++ YVG    +I
Sbjct: 182 MPKGILLFGEPGTGKTLLARAIAGEAEVPFYAVSGSDFVQV-YVGVGASRI 231


>gi|258546118|ref|ZP_05706352.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Cardiobacterium hominis ATCC 15826]
 gi|258518543|gb|EEV87402.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Cardiobacterium hominis ATCC 15826]
          Length = 761

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   + GQ +A   +A A++         A LRD   P  + L  GPTGVGKT + R+L
Sbjct: 454 DLKTVVFGQNEAIEHLASAIKLSR------AGLRDAEKPIGSFLFTGPTGVGKTEVCRQL 507

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A + G   ++ +++++ E   + R
Sbjct: 508 AHVLGIKLLRYDMSEYMESHTISR 531


>gi|251782262|ref|YP_002996564.1| ATP-dependentprotease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390891|dbj|BAH81350.1| ATP-dependentprotease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 699

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 23/103 (22%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 407 KEISNRLKGHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 459

Query: 68  AISRRLA-RLAGA--PFIKVEVTKF-----------TEIGYVG 96
            ++++LA  L G+    I+++++++           T  GYVG
Sbjct: 460 ELAKQLALDLFGSKEAIIRLDMSEYSDRTAVSKLIGTTAGYVG 502


>gi|293331089|ref|NP_001167681.1| 26S protease regulatory subunit 6B [Zea mays]
 gi|195626868|gb|ACG35264.1| 26S protease regulatory subunit 6B [Zea mays]
          Length = 420

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 174 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 228

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 229 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|198276295|ref|ZP_03208826.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
 gi|198270737|gb|EDY95007.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 219 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDL 271


>gi|195579264|ref|XP_002079482.1| GD23978 [Drosophila simulans]
 gi|194191491|gb|EDX05067.1| GD23978 [Drosophila simulans]
          Length = 384

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|116753771|ref|YP_842889.1| proteasome-activating nucleotidase [Methanosaeta thermophila PT]
 gi|116665222|gb|ABK14249.1| Proteasome-activating nucleotidase [Methanosaeta thermophila PT]
          Length = 404

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 17/103 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT +++ +A    A F++V  ++F +  Y+G    +++R+L D+A  
Sbjct: 179 PKGVLLYGPPGTGKTLLAKAVANSTEATFLRVVGSEFVQ-KYIGEGA-RLVRELFDLA-- 234

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFR 152
                   + R  A I  +E  LDA+  +    ATS  REV R
Sbjct: 235 --------KSRAPAIIFIDE--LDAIGSRRIDGATSGDREVQR 267


>gi|124810171|ref|XP_001348790.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
 gi|23497690|gb|AAN37229.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT I+R +A  A  PF++   ++F E+ +VG    + IR+L   A
Sbjct: 286 LPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFEEM-FVGVGARR-IRELFQAA 342


>gi|399265|sp|P17422|CLPB_DICNO RecName: Full=Chaperone protein ClpB
          Length = 860

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L+  ++GQ+ A  AVA A+R NR       A L D   P  + L +GPTGVGKT + R L
Sbjct: 571 LNERVVGQKTAVEAVANAIRRNR-------AGLSDPKRPIGSFLFLGPTGVGKTELCRTL 623

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    +    +++++++F E   V R
Sbjct: 624 AQFLFDSEENMVRIDMSEFMEKHSVAR 650


>gi|315635885|ref|ZP_07891147.1| cell division protein FtsH [Arcobacter butzleri JV22]
 gi|315479864|gb|EFU70535.1| cell division protein FtsH [Arcobacter butzleri JV22]
          Length = 662

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A   F+ V  + F E+ +VG    + +RDL + A
Sbjct: 226 IPKGVLLVGPPGTGKTLLAKAVAGEANVEFLSVSGSAFIEM-FVGVGASR-VRDLFEQA 282


>gi|297797479|ref|XP_002866624.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312459|gb|EFH42883.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 855

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 348 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 391


>gi|283795863|ref|ZP_06345016.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291076494|gb|EFE13858.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|295115763|emb|CBL36610.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SM4/1]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK   + +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 185 VAGEDEAKESLKEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 239

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 240 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 271


>gi|260943786|ref|XP_002616191.1| hypothetical protein CLUG_03432 [Clavispora lusitaniae ATCC 42720]
 gi|238849840|gb|EEQ39304.1| hypothetical protein CLUG_03432 [Clavispora lusitaniae ATCC 42720]
          Length = 962

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 522 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 578


>gi|254468710|ref|ZP_05082116.1| ATP-dependent chaperone ClpB [beta proteobacterium KB13]
 gi|207087520|gb|EDZ64803.1| ATP-dependent chaperone ClpB [beta proteobacterium KB13]
          Length = 863

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           S L + ++GQ +A ++++ A+R R R     + L DE  P  + L +GPTGVGKT +S+ 
Sbjct: 565 SVLHQRVVGQDEAVKSISNAIR-RSR-----SGLSDEGRPYGSFLFLGPTGVGKTELSKS 618

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    I++++++F E   V R
Sbjct: 619 LASFLFDSEEHLIRIDMSEFMEKHSVAR 646


>gi|194857213|ref|XP_001968910.1| GG25131 [Drosophila erecta]
 gi|190660777|gb|EDV57969.1| GG25131 [Drosophila erecta]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|327289247|ref|XP_003229336.1| PREDICTED: AFG3-like protein 1-like [Anolis carolinensis]
          Length = 722

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 246 LKNPKQYQELGAKI-----PKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 299

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 300 FVGVGPAR-VRDMFALA 315


>gi|325122453|gb|ADY81976.1| ATP-binding protease component [Acinetobacter calcoaceticus PHEA-2]
          Length = 758

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+  A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALGSAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|294494979|ref|YP_003541472.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292665978|gb|ADE35827.1| AAA ATPase central domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 367

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+GQ  AKR   +  R     ++       +  P+NIL  GP+G GKT +++ LA     
Sbjct: 124 IVGQVKAKRKCKLIERYLEEPERF-----GKWAPRNILFHGPSGTGKTMVAKALANKTDV 178

Query: 80  PFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
            F+ ++ T+     +G   R + Q+     ++A +I+
Sbjct: 179 AFLPIKATQLIGEFVGEGSRQIHQLYEKAGELAPSII 215


>gi|288929194|ref|ZP_06423039.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329296|gb|EFC67882.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ  A   V  A+      Q   A L +E  P   +L VGPTGVGKT ++R LA   G
Sbjct: 456 IYGQNQAVELVTQAI------QTAKAGLTEEGKPLAAMLFVGPTGVGKTEVARVLATELG 509

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              ++ +++++TE            GYVG     ++ D +    N V
Sbjct: 510 IELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 556


>gi|260459201|ref|ZP_05807456.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           opportunistum WSM2075]
 gi|259034755|gb|EEW36011.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           opportunistum WSM2075]
          Length = 822

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT ++++L
Sbjct: 470 ELKRVVYGQDTAITALTSAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQL 523

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   I+ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 524 AASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 575


>gi|198452025|ref|XP_001358593.2| GA21817 [Drosophila pseudoobscura pseudoobscura]
 gi|198131754|gb|EAL27734.2| GA21817 [Drosophila pseudoobscura pseudoobscura]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 142 KQEIREAVELPLTHAHLYKQIGID-----PPRGVLLYGPPGCGKTMLAKAVAHHTTANFI 196

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            V  ++F +  Y+G    +++RDL  +A
Sbjct: 197 SVVGSEFVQ-KYLGEG-PRMVRDLFRLA 222


>gi|170572112|ref|XP_001891987.1| ATPase, AAA family protein [Brugia malayi]
 gi|158603166|gb|EDP39203.1| ATPase, AAA family protein [Brugia malayi]
          Length = 610

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   +VG   E+++R L  +A
Sbjct: 495 PKGVLLFGPPGTGKTMIGRCVASQCNATFFNIAASSITS-KWVGEG-EKLVRALFAIA 550



 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP+G GKT I R  A    A F  +  +      +VG   E+++R L  +A
Sbjct: 170 PKGVLLFGPSGTGKTMIGRCAASQCKATFFNIAASSIMS-KWVGEG-EKLVRALFAIA 225


>gi|157736713|ref|YP_001489396.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157698567|gb|ABV66727.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 661

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A   F+ V  + F E+ +VG    + +RDL + A
Sbjct: 226 IPKGVLLVGPPGTGKTLLAKAVAGEANVEFLSVSGSAFIEM-FVGVGASR-VRDLFEQA 282


>gi|160902284|ref|YP_001567865.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
 gi|310943096|sp|A9BHD3|FTSH2_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|160359928|gb|ABX31542.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MPK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 195 MPKGVLLSGPPGTGKTLVARAVAGEADVPFYFMSGSDFVEL-FVGVGAAR-VRDLFKEA 251


>gi|57641134|ref|YP_183612.1| TBP-interacting protein Tip49-like protein [Thermococcus
          kodakarensis KOD1]
 gi|57159458|dbj|BAD85388.1| TBP-interacting protein Tip49 homolog [Thermococcus kodakarensis
          KOD1]
          Length = 440

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA+             R +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 39 MVGQIKAREAAGIAVE---------LIKRGKLAGKGILLVGPTGSGKTAIAMGIARELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|15237159|ref|NP_200637.1| RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase [Arabidopsis
           thaliana]
 gi|297793353|ref|XP_002864561.1| hypothetical protein ARALYDRAFT_495939 [Arabidopsis lyrata subsp.
           lyrata]
 gi|28558168|sp|Q9SEI4|PRS6B_ARATH RecName: Full=26S protease regulatory subunit 6B homolog; AltName:
           Full=26S protease subunit 6B homolog; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=Protein BMAA insensitive morphology 409; AltName:
           Full=Regulatory particle triple-A ATPase subunit 3
 gi|6652882|gb|AAF22523.1|AF123392_1 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
 gi|8777330|dbj|BAA96920.1| 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
 gi|17979231|gb|AAL49932.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
 gi|56382019|gb|AAV85728.1| At5g58290 [Arabidopsis thaliana]
 gi|297310396|gb|EFH40820.1| hypothetical protein ARALYDRAFT_495939 [Arabidopsis lyrata subsp.
           lyrata]
 gi|332009646|gb|AED97029.1| regulatory particle triple-A ATPase 3 [Arabidopsis thaliana]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 162 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 216

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 217 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|324112232|gb|EGC06210.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           fergusonii B253]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|306430717|emb|CBJ17105.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYVVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|157376528|ref|YP_001475128.1| microtubule-severing ATPase [Shewanella sediminis HAW-EB3]
 gi|157318902|gb|ABV38000.1| Microtubule-severing ATPase [Shewanella sediminis HAW-EB3]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|110003920|emb|CAK98260.1| probable cell division protein ftsh [Spiroplasma citri]
          Length = 672

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           PK +L+ GP G GKT +++ +A  AG PF  +  ++F E+ +VG    +I
Sbjct: 220 PKGVLMEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFEEM-FVGVGASRI 268


>gi|94268347|ref|ZP_01291151.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [delta
           proteobacterium MLMS-1]
 gi|93451649|gb|EAT02438.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [delta
           proteobacterium MLMS-1]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLMGAPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|312069301|ref|XP_003137618.1| hypothetical protein LOAG_02032 [Loa loa]
 gi|307767216|gb|EFO26450.1| hypothetical protein LOAG_02032 [Loa loa]
          Length = 486

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 242 KQEVREAVELPLTHGELYQQIGID-----PPRGVLMYGPPGCGKTMLAKAVAAHTTASFI 296

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 297 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 322


>gi|295091048|emb|CBK77155.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK   + +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 185 VAGEDEAKESLKEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 239

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 240 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 271


>gi|255080816|ref|XP_002503981.1| predicted protein [Micromonas sp. RCC299]
 gi|226519248|gb|ACO65239.1| predicted protein [Micromonas sp. RCC299]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +L  GP G GKT +++ +A  AG PF     ++F E+ +VG   ++ +RDL
Sbjct: 14  IPKGVLFEGPPGTGKTLLAKAIAGEAGVPFFYANGSEFVEM-FVGVAAKR-VRDL 66


>gi|171689492|ref|XP_001909686.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944708|emb|CAP70819.1| unnamed protein product [Podospora anserina S mat+]
          Length = 799

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LL GP+G GKT ++  +A  AGA FI +       +G      E+ IRD+ D AI I 
Sbjct: 231 GVLLHGPSGCGKTTLAHAVAGSAGAAFIPISAPSI--VGGTSGESEKNIRDVFDEAIRIA 288


>gi|94266400|ref|ZP_01290097.1| Peptidase M41, FtsH [delta proteobacterium MLMS-1]
 gi|93452995|gb|EAT03489.1| Peptidase M41, FtsH [delta proteobacterium MLMS-1]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 186 IPKGVLLMGAPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238


>gi|82779447|ref|YP_405796.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           dysenteriae Sd197]
 gi|123560946|sp|Q328F0|MIAA_SHIDS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|81243595|gb|ABB64305.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Shigella dysenteriae Sd197]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|61657495|emb|CAI44406.1| ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga sp.
          RQ2]
          Length = 106

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 27/33 (81%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
          +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R
Sbjct: 64 TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKR 96


>gi|15606261|ref|NP_213640.1| cell division protein FtsH [Aquifex aeolicus VF5]
 gi|6225391|sp|O67077|FTSH_AQUAE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2983448|gb|AAC07029.1| cell division protein FtsH [Aquifex aeolicus VF5]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL G  GVGKT +++ +A  A  PFI V  + F E+ +VG    + +RDL + A
Sbjct: 188 PKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEM-FVGVGAAR-VRDLFETA 243


>gi|67467034|ref|XP_649637.1| ATPase, Vps4 oligomerisation domain containing protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56466121|gb|EAL44253.1| ATPase, Vps4 oligomerisation domain containing protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G ++AK+ V  A+     R  +   LR    PK +LL GP G GKT I + +A  + A
Sbjct: 232 IAGLKNAKKIVQEAVIWPMLRPDIFTGLR--APPKGLLLFGPPGTGKTMIGKAIASQSNA 289

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   ++G   E+++R L  VA
Sbjct: 290 TFFNISASALTS-KWIGEG-EKLVRALFAVA 318


>gi|329769333|ref|ZP_08260749.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
 gi|328839136|gb|EGF88721.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
          Length = 662

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPKGVLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFKEA 256


>gi|319760243|ref|YP_004124181.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038957|gb|ADV33507.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|294678922|ref|YP_003579537.1| chaperone ClpB [Rhodobacter capsulatus SB 1003]
 gi|294477742|gb|ADE87130.1| chaperone ClpB [Rhodobacter capsulatus SB 1003]
          Length = 871

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ  A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 563 ELHKRVIGQDAAITAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       A  +++++++F E   V R
Sbjct: 617 ANYLFDDDAAMVRIDMSEFMEKHSVSR 643


>gi|260220961|emb|CBA29050.1| Cell division protease ftsH [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFENA 252


>gi|189463184|ref|ZP_03011969.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
 gi|189430163|gb|EDU99147.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDL 274


>gi|145296675|ref|YP_001139496.1| hypothetical protein cgR_2580 [Corynebacterium glutamicum R]
 gi|140846595|dbj|BAF55594.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 925

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ++A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 532 ELHKRIIGQEEAVKAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 585

Query: 74  A 74
           A
Sbjct: 586 A 586


>gi|145057|gb|AAA23344.1| ATP-dependent protease [Dichelobacter nodosus]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)

Query: 16 LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
          L+  ++GQ+ A  AVA A+R NR       A L D   P  + L +GPTGVGKT + R L
Sbjct: 1  LNERVVGQKTAVEAVANAIRRNR-------AGLSDPKRPIGSFLFLGPTGVGKTELCRTL 53

Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGR 97
          A+    +    +++++++F E   V R
Sbjct: 54 AQFLFDSEENMVRIDMSEFMEKHSVAR 80


>gi|323475184|gb|ADX85790.1| 26S proteasome subunit P45 family [Sulfolobus islandicus REY15A]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +I+R+L ++A
Sbjct: 168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQ-KFVGEGA-RIVRELFEMA 223


>gi|320580738|gb|EFW94960.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia angusta DL-1]
          Length = 815

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     P+  +L GP G GKT +++  A  AG PF  V  ++F E+ 
Sbjct: 370 LKNPEKYERLGAKI-----PRGAILTGPPGTGKTMLAKATAGEAGVPFYSVSGSEFVEM- 423

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +R+L   A
Sbjct: 424 FVGVGASR-VRELFKTA 439


>gi|302348095|ref|YP_003815733.1| Proteasome-activating nucleotidase [Acidilobus saccharovorans
           345-15]
 gi|302328507|gb|ADL18702.1| Proteasome-activating nucleotidase [Acidilobus saccharovorans
           345-15]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104
           PK +LL GP G GKT ++R LA    A FI+V  ++F    IG   R V ++ R
Sbjct: 167 PKGVLLYGPPGTGKTLVARALAGEVKATFIRVVASQFVNKFIGEGARIVREVFR 220


>gi|302836842|ref|XP_002949981.1| ClpD chaperone, Hsp100 family [Volvox carteri f. nagariensis]
 gi|300264890|gb|EFJ49084.1| ClpD chaperone, Hsp100 family [Volvox carteri f. nagariensis]
          Length = 972

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L  +++GQ+DA  ++A AL  R R       L+D   P  ++L VGPTGVGKT +++ 
Sbjct: 583 SDLGHHVVGQEDAVESIATAL-CRAR-----CGLKDPRRPVASLLFVGPTGVGKTELAKV 636

Query: 73  LA 74
           L+
Sbjct: 637 LS 638


>gi|226471418|emb|CAX70790.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 169 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 223

Query: 81  FIKVEVTKFTEIGYVGR 97
           FI+V  ++F +  Y+GR
Sbjct: 224 FIRVVGSEFVQ-KYLGR 239


>gi|167957511|ref|ZP_02544585.1| ATP-dependent metalloprotease FtsH [candidate division TM7
           single-cell isolate TM7c]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT ++R +A  A  PF  +  ++F E+ +VG    + +RDL   A
Sbjct: 210 IPKGVLLVGNPGTGKTMLARAVAGEANVPFFSISGSEFVEM-FVGVGASR-VRDLFSKA 266


>gi|163782453|ref|ZP_02177451.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882486|gb|EDP75992.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 1002

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++ Q+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +S+ L
Sbjct: 685 ELHKRVVDQEHAVKAVSEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKAL 738

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A L        I++++++F E            GYVG
Sbjct: 739 AELLFGEEDALIRLDMSEFKEEHSVAKLIGAPPGYVG 775


>gi|156382550|ref|XP_001632616.1| predicted protein [Nematostella vectensis]
 gi|156219674|gb|EDO40553.1| predicted protein [Nematostella vectensis]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  +L A +     PK  +L GP G GKT +++ +A  AG PF+ +  ++F E+ 
Sbjct: 165 LKNPQQYHELGAKI-----PKGAILSGPPGTGKTLLAKAVAGEAGVPFLSISGSEFLEM- 218

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 219 FVGVGPAR-VRDLFAQA 234


>gi|109897892|ref|YP_661147.1| ATP-dependent metalloprotease FtsH [Pseudoalteromonas atlantica
           T6c]
 gi|109700173|gb|ABG40093.1| membrane protease FtsH catalytic subunit [Pseudoalteromonas
           atlantica T6c]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|56460083|ref|YP_155364.1| membrane ATP-dependent Zn protease [Idiomarina loihiensis L2TR]
 gi|56179093|gb|AAV81815.1| Membrane ATP-dependent Zn proteases [Idiomarina loihiensis L2TR]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ ++  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPKGVLMVGPPGTGKTLLAKAISGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|72547461|ref|XP_843233.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363747|emb|CBZ12753.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G +D K A+   ++  ++ Q+L +       PK +LL GP G GKT ++R LA+  G  F
Sbjct: 104 GLEDVKDALTEHIKWPFQHQELFSGKTVRSHPKGVLLYGPPGTGKTLLARALAKELGCSF 163

Query: 82  IKV 84
           I V
Sbjct: 164 INV 166


>gi|332526117|ref|ZP_08402255.1| membrane protease FtsH catalytic subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332109960|gb|EGJ10588.1| membrane protease FtsH catalytic subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 249


>gi|329768246|ref|ZP_08259747.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
 gi|328837445|gb|EGF87074.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
          Length = 668

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPKGVLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFKEA 256


>gi|299116091|emb|CBN74507.1| Yme1 homolog, mitochondrial inner membrane i-AAA protease
           [Ectocarpus siliculosus]
          Length = 748

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ++L GP G GKT ++R +A  AG PF     ++F E+ +VG   ++ +R+L   A
Sbjct: 312 LPRGLMLTGPPGTGKTLLARAIAGEAGVPFYYSSGSEFEEM-FVGVGAKR-VRELFAAA 368


>gi|293607904|ref|ZP_06690207.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828477|gb|EFF86839.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 758

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+  A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 453 DLKRVVFGQDEAITALGSAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           A+L G   ++ +++++ E            GYVG +   ++ D +
Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551


>gi|261749484|ref|YP_003257170.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497577|gb|ACX84027.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 228 IPKGALLIGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFEKA 284


>gi|227828122|ref|YP_002829902.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.14.25]
 gi|227830829|ref|YP_002832609.1| proteasome-activating nucleotidase [Sulfolobus islandicus L.S.2.15]
 gi|229579725|ref|YP_002838124.1| proteasome-activating nucleotidase [Sulfolobus islandicus
           Y.G.57.14]
 gi|229585361|ref|YP_002843863.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.27]
 gi|238620322|ref|YP_002915148.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.4]
 gi|284998344|ref|YP_003420112.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5]
 gi|259535094|sp|C3MZI6|PAN_SULIA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535097|sp|C4KIR6|PAN_SULIK RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535101|sp|C3MRF1|PAN_SULIL RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535105|sp|C3MY47|PAN_SULIM RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535113|sp|C3N7K8|PAN_SULIY RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|227457277|gb|ACP35964.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.S.2.15]
 gi|227459918|gb|ACP38604.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.14.25]
 gi|228010440|gb|ACP46202.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.G.57.14]
 gi|228020411|gb|ACP55818.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.27]
 gi|238381392|gb|ACR42480.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.4]
 gi|284446240|gb|ADB87742.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5]
 gi|323477916|gb|ADX83154.1| 26S proteasome subunit P45 family [Sulfolobus islandicus HVE10/4]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +I+R+L ++A
Sbjct: 168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQ-KFVGEGA-RIVRELFEMA 223


>gi|255505515|ref|ZP_05346578.3| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255267342|gb|EET60547.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 570

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK ++LVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 161 IPKGVILVGSPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 213


>gi|195148262|ref|XP_002015093.1| GL19525 [Drosophila persimilis]
 gi|194107046|gb|EDW29089.1| GL19525 [Drosophila persimilis]
          Length = 551

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           P+ +LL GP G GKT I++ +A  A A F  +  +  T   +VG   E++++ L  VA+
Sbjct: 311 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSTLTS-KWVGE-AEKLVKTLFAVAV 367


>gi|194761732|ref|XP_001963082.1| GF14117 [Drosophila ananassae]
 gi|190616779|gb|EDV32303.1| GF14117 [Drosophila ananassae]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 132 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 173


>gi|188534765|ref|YP_001908562.1| protein disaggregation chaperone [Erwinia tasmaniensis Et1/99]
 gi|188029807|emb|CAO97688.1| Chaperone ClpB [Erwinia tasmaniensis Et1/99]
          Length = 859

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQQ+A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHTRVIGQQEAVEAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|160934135|ref|ZP_02081522.1| hypothetical protein CLOLEP_02998 [Clostridium leptum DSM 753]
 gi|156866808|gb|EDO60180.1| hypothetical protein CLOLEP_02998 [Clostridium leptum DSM 753]
          Length = 759

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   IIGQ +A +AV+ A+R R R Q  P        P + + VGPTGVGKT + +
Sbjct: 462 IEDKLKSRIIGQDEAVKAVSAAIR-RSRVQISP-----RRRPASFIFVGPTGVGKTELVK 515

Query: 72  RLAR-LAGAP--FIKVEVTKFTEIGYVGR 97
            L++ L   P   I++++++F E   V R
Sbjct: 516 VLSQELFDTPETLIRLDMSEFMEKHSVSR 544


>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
 gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA   G  F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 226 PKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVD-KYIGESA-KIIREMFGYA 281


>gi|300172736|ref|YP_003771901.1| cell division protease [Leuconostoc gasicomitatum LMG 18811]
 gi|299887114|emb|CBL91082.1| Cell division protease ftsH homolog [Leuconostoc gasicomitatum LMG
           18811]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEANVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|296111612|ref|YP_003621994.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295833144|gb|ADG41025.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPKGVLLEGPPGTGKTLLAKAVAGEANVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 276


>gi|282924437|ref|ZP_06332109.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A9765]
 gi|282592848|gb|EFB97852.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A9765]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|257424638|ref|ZP_05601065.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427306|ref|ZP_05603705.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429942|ref|ZP_05606326.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257435548|ref|ZP_05611596.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282913357|ref|ZP_06321146.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M899]
 gi|282923274|ref|ZP_06330954.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C101]
 gi|293500403|ref|ZP_06666254.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509348|ref|ZP_06668059.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus M809]
 gi|293523935|ref|ZP_06670622.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257272208|gb|EEV04331.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275499|gb|EEV06972.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279139|gb|EEV09740.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257284739|gb|EEV14858.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314142|gb|EFB44532.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322389|gb|EFB52711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920898|gb|EFD97959.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095408|gb|EFE25669.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467445|gb|EFF09960.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus M809]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|238924658|ref|YP_002938174.1| ATPase AAA-2 [Eubacterium rectale ATCC 33656]
 gi|238876333|gb|ACR76040.1| ATPase AAA-2 [Eubacterium rectale ATCC 33656]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A  AVA A+R R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 516 LHKRVIGQEEAVSAVAKAVR-RGR-----VGLKDPKKPIGSFLFLGPTGVGKTEVSKALA 569

Query: 75  RLAGA---PFIKVEVTKFTE 91
                     I+V+++++ E
Sbjct: 570 EAVFGKEDAMIRVDMSEYME 589


>gi|224025880|ref|ZP_03644246.1| hypothetical protein BACCOPRO_02626 [Bacteroides coprophilus DSM
           18228]
 gi|224019116|gb|EEF77114.1| hypothetical protein BACCOPRO_02626 [Bacteroides coprophilus DSM
           18228]
          Length = 681

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 221 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDL 273


>gi|224086733|ref|XP_002307945.1| predicted protein [Populus trichocarpa]
 gi|222853921|gb|EEE91468.1| predicted protein [Populus trichocarpa]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 220

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|223042918|ref|ZP_03612966.1| ATPase family associated with various cellular activities (AAA)
           protein [Staphylococcus capitis SK14]
 gi|222443772|gb|EEE49869.1| ATPase family associated with various cellular activities (AAA)
           protein [Staphylococcus capitis SK14]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHNRVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|221124416|ref|XP_002164139.1| PREDICTED: similar to Clan MA, family M41, FtsH endopeptidase-like
           metallopeptidase [Hydra magnipapillata]
          Length = 510

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 65  IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFENA 121


>gi|195338477|ref|XP_002035851.1| GM15776 [Drosophila sechellia]
 gi|194129731|gb|EDW51774.1| GM15776 [Drosophila sechellia]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ AG  FI ++V   T+  Y
Sbjct: 130 PKGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWY 171


>gi|195146726|ref|XP_002014335.1| GL19142 [Drosophila persimilis]
 gi|194106288|gb|EDW28331.1| GL19142 [Drosophila persimilis]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
          PK +LL GP G GKT I++  A+ AG  FI ++V   T+  Y
Sbjct: 52 PKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWY 93


>gi|322796622|gb|EFZ19093.1| hypothetical protein SINV_07148 [Solenopsis invicta]
          Length = 373

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +AR   A FI
Sbjct: 129 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVARHTTAAFI 183

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 184 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 209


>gi|298693856|gb|ADI97078.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus ED133]
 gi|323439794|gb|EGA97511.1| endopeptidase [Staphylococcus aureus O11]
 gi|323443104|gb|EGB00724.1| endopeptidase [Staphylococcus aureus O46]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|295397687|ref|ZP_06807761.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
 gi|294974075|gb|EFG49828.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 11/62 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L +++IGQ DA   +A A+R NR    RQ  P          + L VGPTGVGKT ++R+
Sbjct: 444 LKQHVIGQDDAVEHIAKAIRRNRVGLSRQDRPIG--------SFLFVGPTGVGKTELARQ 495

Query: 73  LA 74
           LA
Sbjct: 496 LA 497


>gi|262049567|ref|ZP_06022436.1| endopeptidase [Staphylococcus aureus D30]
 gi|259162307|gb|EEW46880.1| endopeptidase [Staphylococcus aureus D30]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|257432644|ref|ZP_05609004.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282059|gb|EEV12194.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|242372741|ref|ZP_04818315.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
 gi|242349514|gb|EES41115.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|239636922|ref|ZP_04677920.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           warneri L37603]
 gi|239597470|gb|EEQ79969.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           warneri L37603]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHHRVIGQKDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|255712383|ref|XP_002552474.1| KLTH0C05742p [Lachancea thermotolerans]
 gi|238933853|emb|CAR22036.1| KLTH0C05742p [Lachancea thermotolerans]
          Length = 744

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ IR+L   A
Sbjct: 311 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRELFSQA 367


>gi|206891070|ref|YP_002248658.1| tRNA delta(2)-isopentenylpyrophosphate transferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226704739|sp|B5YK93|MIAA_THEYD RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|206743008|gb|ACI22065.1| tRNA delta(2)-isopentenylpyrophosphate transferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFI---KVEVTKFTEIGYVGRNVEQ---IIRDLV 107
           K ++L+GPTGVGKT +S ++A+L  A  I    +++ K+ +IG     +EQ   +I  ++
Sbjct: 4   KIVILLGPTGVGKTELSIKIAKLLNAEIISSDSMQIYKYMDIGTAKPTLEQRKEVIHHMI 63

Query: 108 DV 109
           D+
Sbjct: 64  DI 65


>gi|146329388|ref|YP_001209038.1| ATP-dependent protease ClpB [Dichelobacter nodosus VCS1703A]
 gi|146232858|gb|ABQ13836.1| ATP-dependent protease ClpB [Dichelobacter nodosus VCS1703A]
          Length = 857

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L+  ++GQ+ A  AVA A+R NR       A L D   P  + L +GPTGVGKT + R L
Sbjct: 568 LNERVVGQKTAVEAVANAIRRNR-------AGLSDPKRPIGSFLFLGPTGVGKTELCRTL 620

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    +    +++++++F E   V R
Sbjct: 621 AQFLFDSEENMVRIDMSEFMEKHSVAR 647


>gi|17380916|gb|AAL36270.1| putative AAA-type ATPase [Arabidopsis thaliana]
          Length = 809

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 341 LKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 394

Query: 94  YVG 96
           +VG
Sbjct: 395 FVG 397


>gi|332827689|gb|EGK00428.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 677

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 287


>gi|319949225|ref|ZP_08023310.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
 gi|319437110|gb|EFV92145.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
          Length = 850

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R ++GQ +A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 569 ELGRRVVGQHEAVRAVSDAVR-RAR-----AGVADPNRPTGSFLFLGPTGVGKTELAKSL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A+         +++++++++E   V R V
Sbjct: 623 AQFLFDDERAMVRIDMSEYSEKHSVARLV 651


>gi|332653965|ref|ZP_08419709.1| Clp protease, ATP-binding subunit ClpC [Ruminococcaceae bacterium
           D16]
 gi|332517051|gb|EGJ46656.1| Clp protease, ATP-binding subunit ClpC [Ruminococcaceae bacterium
           D16]
          Length = 768

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 9/85 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L ++IIGQ +A +AV  A+R R R       +  +  P + + VG TGVGKT + ++LA+
Sbjct: 475 LKKHIIGQDEAVKAVVAAIR-RGR-----VGISPKHKPVSFIFVGSTGVGKTELVKQLAQ 528

Query: 76  -LAGAP--FIKVEVTKFTEIGYVGR 97
            L  AP   I++++++F E   V R
Sbjct: 529 DLFHAPESLIRLDMSEFMEKYAVSR 553


>gi|301023431|ref|ZP_07187214.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 69-1]
 gi|331665835|ref|ZP_08366729.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA143]
 gi|300397018|gb|EFJ80556.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 69-1]
 gi|331056886|gb|EGI28880.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA143]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|283769680|ref|ZP_06342572.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus H19]
 gi|283459827|gb|EFC06917.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus H19]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|260858324|ref|YP_003232215.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260870921|ref|YP_003237323.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O111:H- str. 11128]
 gi|257756973|dbj|BAI28475.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257767277|dbj|BAI38772.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O111:H- str. 11128]
 gi|323156012|gb|EFZ42174.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli EPECa14]
 gi|323176071|gb|EFZ61663.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 1180]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|255320455|ref|ZP_05361636.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SK82]
 gi|262378351|ref|ZP_06071508.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SH164]
 gi|255302427|gb|EET81663.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SK82]
 gi|262299636|gb|EEY87548.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SH164]
          Length = 758

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 454 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 507

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A++ G   ++ +++++ E   V R
Sbjct: 508 AKILGLELVRFDMSEYMERHTVSR 531


>gi|254582218|ref|XP_002497094.1| ZYRO0D15290p [Zygosaccharomyces rouxii]
 gi|238939986|emb|CAR28161.1| ZYRO0D15290p [Zygosaccharomyces rouxii]
          Length = 727

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RD+ + A
Sbjct: 286 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASR-VRDMFEQA 342


>gi|165918374|ref|ZP_02218460.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 334]
 gi|165917880|gb|EDR36484.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 334]
          Length = 859

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 566 TELHKRVIGQDEAVNAVANAIR-RSR-----AGLSDPNRPVGSFLFLGPTGVGKTELCKA 619

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 620 LAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|229581607|ref|YP_002840006.1| proteasome-activating nucleotidase [Sulfolobus islandicus
           Y.N.15.51]
 gi|259535109|sp|C3NFW6|PAN_SULIN RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|228012323|gb|ACP48084.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.N.15.51]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +I+R+L ++A
Sbjct: 168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQ-KFVGEGA-RIVRELFEMA 223


>gi|90580379|ref|ZP_01236186.1| putative clpB, ATPase with chaperone activity [Vibrio angustum S14]
 gi|90438681|gb|EAS63865.1| putative clpB, ATPase with chaperone activity [Vibrio angustum S14]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHHRVIGQDEAVVAVANAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTELCKSL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|24115526|ref|NP_710036.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 2a str. 301]
 gi|30065543|ref|NP_839714.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 2a str. 2457T]
 gi|27734420|sp|P59197|MIAA_SHIFL RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|24054853|gb|AAN45743.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Shigella flexneri 2a str. 301]
 gi|30043807|gb|AAP19526.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Shigella flexneri 2a str. 2457T]
 gi|281603633|gb|ADA76617.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 2002017]
 gi|313646354|gb|EFS10816.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 2a str. 2457T]
 gi|332749047|gb|EGJ79470.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri K-671]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSVLIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|187734140|ref|YP_001882862.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella boydii
           CDC 3083-94]
 gi|238691727|sp|B2TY46|MIAA_SHIB3 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|187431132|gb|ACD10406.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella boydii
           CDC 3083-94]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAVPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|328773498|gb|EGF83535.1| hypothetical protein BATDEDRAFT_22321 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL   A
Sbjct: 337 IPKGAVLSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFIEM-FVGVGSSR-VRDLFASA 393


>gi|308175888|ref|YP_003915294.1| cell division protein FtsH [Arthrobacter arilaitensis Re117]
 gi|307743351|emb|CBT74323.1| putative cell division protein FtsH [Arthrobacter arilaitensis
           Re117]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLAKAVAGEAQVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 255


>gi|306817201|ref|ZP_07450948.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris ATCC 35239]
 gi|304650003|gb|EFM47281.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris ATCC 35239]
          Length = 915

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ +A +AV+ ++R R R     A L+D   P  + +  GPTGVGKT +++ L
Sbjct: 518 ELHKRIIGQNEAVKAVSQSIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKAL 571

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A          I++++++F+E            GYVG
Sbjct: 572 AEFLFGDENALIQLDMSEFSEKHTASRLFGSPPGYVG 608


>gi|253563894|ref|ZP_04841351.1| metalloprotease FtsH [Bacteroides sp. 3_2_5]
 gi|265765402|ref|ZP_06093677.1| metalloprotease FtsH [Bacteroides sp. 2_1_16]
 gi|251947670|gb|EES87952.1| metalloprotease FtsH [Bacteroides sp. 3_2_5]
 gi|263254786|gb|EEZ26220.1| metalloprotease FtsH [Bacteroides sp. 2_1_16]
          Length = 664

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 209 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 265


>gi|227876310|ref|ZP_03994423.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           mulieris ATCC 35243]
 gi|269976114|ref|ZP_06183113.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
           mulieris 28-1]
 gi|307701521|ref|ZP_07638539.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris FB024-16]
 gi|227843083|gb|EEJ53279.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           mulieris ATCC 35243]
 gi|269935707|gb|EEZ92242.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
           mulieris 28-1]
 gi|307613313|gb|EFN92564.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris FB024-16]
          Length = 915

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ +A +AV+ ++R R R     A L+D   P  + +  GPTGVGKT +++ L
Sbjct: 518 ELHKRIIGQNEAVKAVSQSIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKAL 571

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A          I++++++F+E            GYVG
Sbjct: 572 AEFLFGDENALIQLDMSEFSEKHTASRLFGSPPGYVG 608


>gi|145356967|ref|XP_001422694.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582937|gb|ABP01011.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P   LLVGP G GKT +++  A  AG PF+ +  + F E+ +VG    + +RDL
Sbjct: 20  IPHGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM-FVGVGPSR-VRDL 72


>gi|153207187|ref|ZP_01945966.1| ATP-dependent chaperone ClpB [Coxiella burnetii 'MSU Goat Q177']
 gi|212219427|ref|YP_002306214.1| ClpB [Coxiella burnetii CbuK_Q154]
 gi|120576848|gb|EAX33472.1| ATP-dependent chaperone ClpB [Coxiella burnetii 'MSU Goat Q177']
 gi|212013689|gb|ACJ21069.1| ClpB [Coxiella burnetii CbuK_Q154]
          Length = 859

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 566 TELHKRVIGQDEAVNAVANAIR-RSR-----AGLSDPNRPVGSFLFLGPTGVGKTELCKA 619

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 620 LAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|67479697|ref|XP_655230.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56472352|gb|EAL49843.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    + F++V  ++  +  YVG    +++RDL D+A
Sbjct: 194 PKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQ-KYVGEGA-KMVRDLFDMA 249


>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073500|gb|ADJ62899.1| ATP-dependent Zn metallopeptidase (cell division FtsH)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFENA 245


>gi|260428761|ref|ZP_05782738.1| chaperone protein ClpB [Citreicella sp. SE45]
 gi|260419384|gb|EEX12637.1| chaperone protein ClpB [Citreicella sp. SE45]
          Length = 864

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 564 LHKRVVGQNQAVKAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 617

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 618 EFLFDDDSAMVRIDMSEFMEKHSVAR 643


>gi|253315634|ref|ZP_04838847.1| endopeptidase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|227528913|ref|ZP_03958962.1| ATP-dependent metalloprotease FtsH [Lactobacillus vaginalis ATCC
           49540]
 gi|227351187|gb|EEJ41478.1| ATP-dependent metalloprotease FtsH [Lactobacillus vaginalis ATCC
           49540]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL + A
Sbjct: 201 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257


>gi|241557953|ref|XP_002400359.1| ATPase, putative [Ixodes scapularis]
 gi|229559934|sp|B7PXE3|SPAST_IXOSC RecName: Full=Spastin
 gi|215501771|gb|EEC11265.1| ATPase, putative [Ixodes scapularis]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I GQ+ AK+A++  +     R +L   LR    PK +LL GP G GKT +++ +A  + +
Sbjct: 376 IAGQEVAKQALSEMVILPTDRPELFTGLRAP--PKGLLLFGPPGNGKTMLAKAVAHESNS 433

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F+ +     T   YVG   E+++R L  VA
Sbjct: 434 TFLNISAASLTS-KYVGEG-EKLVRALFAVA 462


>gi|195454601|ref|XP_002074317.1| GK18355 [Drosophila willistoni]
 gi|194170402|gb|EDW85303.1| GK18355 [Drosophila willistoni]
          Length = 423

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT I++ +A  A A F  +  +  T   +VG   E+++R L  VA
Sbjct: 183 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTS-KWVGEG-EKLVRTLFAVA 238


>gi|195145516|ref|XP_002013738.1| GL23235 [Drosophila persimilis]
 gi|194102681|gb|EDW24724.1| GL23235 [Drosophila persimilis]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 142 KQEIREAVELPLTHAHLYKQIGID-----PPRGVLLYGPPGCGKTMLAKAVAHHTTANFI 196

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            V  ++F +  Y+G    +++RDL  +A
Sbjct: 197 SVVGSEFVQ-KYLGEG-PRMVRDLFRLA 222


>gi|182414548|ref|YP_001819614.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|177841762|gb|ACB76014.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 218 IPKGILMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDMFE 272


>gi|183235205|ref|XP_001914172.1| 26S protease regulatory subunit 7 [Entamoeba histolytica HM-1:IMSS]
 gi|169800682|gb|EDS89052.1| 26S protease regulatory subunit 7, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    + F++V  ++  +  YVG    +++RDL D+A
Sbjct: 194 PKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQ-KYVGEGA-KMVRDLFDMA 249


>gi|224137580|ref|XP_002322593.1| predicted protein [Populus trichocarpa]
 gi|118489637|gb|ABK96620.1| unknown [Populus trichocarpa x Populus deltoides]
 gi|222867223|gb|EEF04354.1| predicted protein [Populus trichocarpa]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 220

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|90409009|ref|ZP_01217139.1| cell division protein FtsH [Psychromonas sp. CNPT3]
 gi|90309894|gb|EAS38049.1| cell division protein FtsH [Psychromonas sp. CNPT3]
          Length = 649

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 184 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFAISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|22537450|ref|NP_688301.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 2603V/R]
 gi|22534327|gb|AAN00174.1|AE014251_18 ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 2603V/R]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ DA  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 409 KELGNRLKGKVIGQNDAVEAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 462

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 463 LAKQLA 468


>gi|82750232|ref|YP_415973.1| endopeptidase [Staphylococcus aureus RF122]
 gi|282915846|ref|ZP_06323611.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus D139]
 gi|122063322|sp|Q2YSD6|CLPC_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|82655763|emb|CAI80163.1| endopeptidase [Staphylococcus aureus RF122]
 gi|282320142|gb|EFB50487.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus D139]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|53712067|ref|YP_098059.1| metalloprotease FtsH [Bacteroides fragilis YCH46]
 gi|60680261|ref|YP_210405.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis NCTC 9343]
 gi|52214932|dbj|BAD47525.1| AAA-metalloprotease FtsH with ATPase domain [Bacteroides fragilis
           YCH46]
 gi|60491695|emb|CAH06447.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis NCTC 9343]
 gi|301161788|emb|CBW21328.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis 638R]
          Length = 664

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 209 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 265


>gi|15923515|ref|NP_371049.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926202|ref|NP_373735.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
 gi|49482754|ref|YP_039978.1| stress response-related Clp ATPase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485389|ref|YP_042610.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|87161024|ref|YP_493213.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194286|ref|YP_499078.1| endopeptidase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148266984|ref|YP_001245927.1| ATPase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393031|ref|YP_001315706.1| ATPase [Staphylococcus aureus subsp. aureus JH1]
 gi|151220699|ref|YP_001331521.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156978853|ref|YP_001441112.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508764|ref|YP_001574423.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141039|ref|ZP_03565532.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253731128|ref|ZP_04865293.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732532|ref|ZP_04866697.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005318|ref|ZP_05143919.2| endopeptidase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795377|ref|ZP_05644356.1| endopeptidase [Staphylococcus aureus A9781]
 gi|258408936|ref|ZP_05681217.1| endopeptidase [Staphylococcus aureus A9763]
 gi|258420427|ref|ZP_05683370.1| endopeptidase [Staphylococcus aureus A9719]
 gi|258439347|ref|ZP_05690279.1| endopeptidase [Staphylococcus aureus A9299]
 gi|258444087|ref|ZP_05692424.1| endopeptidase [Staphylococcus aureus A8115]
 gi|258446355|ref|ZP_05694513.1| endopeptidase [Staphylococcus aureus A6300]
 gi|258448448|ref|ZP_05696563.1| endopeptidase [Staphylococcus aureus A6224]
 gi|258452743|ref|ZP_05700741.1| endopeptidase [Staphylococcus aureus A5948]
 gi|258453804|ref|ZP_05701778.1| endopeptidase [Staphylococcus aureus A5937]
 gi|269202147|ref|YP_003281416.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282894957|ref|ZP_06303180.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A8117]
 gi|282903112|ref|ZP_06311003.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus C160]
 gi|282904902|ref|ZP_06312760.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907852|ref|ZP_06315687.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910165|ref|ZP_06317969.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282918312|ref|ZP_06326049.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C427]
 gi|282928860|ref|ZP_06336451.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A10102]
 gi|283957322|ref|ZP_06374775.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284023534|ref|ZP_06377932.1| ClpA-related protein [Staphylococcus aureus subsp. aureus 132]
 gi|294850300|ref|ZP_06791034.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A9754]
 gi|295406901|ref|ZP_06816704.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8819]
 gi|295427062|ref|ZP_06819698.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297208762|ref|ZP_06925190.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246275|ref|ZP_06930124.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8796]
 gi|297590586|ref|ZP_06949225.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|304381877|ref|ZP_07364524.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81649908|sp|Q6GBW3|CLPC_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81651703|sp|Q6GJE4|CLPC_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81706177|sp|Q7A797|CLPC_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81782085|sp|Q99W78|CLPC_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063320|sp|Q2FJB5|CLPC_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063321|sp|Q2G0P5|CLPC_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063323|sp|P0C281|CLPC_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|13700415|dbj|BAB41713.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
 gi|14246293|dbj|BAB56687.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240883|emb|CAG39550.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49243832|emb|CAG42257.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|87126998|gb|ABD21512.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201844|gb|ABD29654.1| endopeptidase, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147740053|gb|ABQ48351.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945483|gb|ABR51419.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373499|dbj|BAF66759.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156720988|dbj|BAF77405.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367573|gb|ABX28544.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725142|gb|EES93871.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729461|gb|EES98190.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789349|gb|EEV27689.1| endopeptidase [Staphylococcus aureus A9781]
 gi|257840287|gb|EEV64750.1| endopeptidase [Staphylococcus aureus A9763]
 gi|257843617|gb|EEV68023.1| endopeptidase [Staphylococcus aureus A9719]
 gi|257847684|gb|EEV71683.1| endopeptidase [Staphylococcus aureus A9299]
 gi|257850757|gb|EEV74702.1| endopeptidase [Staphylococcus aureus A8115]
 gi|257854949|gb|EEV77894.1| endopeptidase [Staphylococcus aureus A6300]
 gi|257858317|gb|EEV81204.1| endopeptidase [Staphylococcus aureus A6224]
 gi|257859616|gb|EEV82466.1| endopeptidase [Staphylococcus aureus A5948]
 gi|257864060|gb|EEV86814.1| endopeptidase [Staphylococcus aureus A5937]
 gi|262074437|gb|ACY10410.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
 gi|269940097|emb|CBI48473.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282317446|gb|EFB47818.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C427]
 gi|282325557|gb|EFB55865.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328236|gb|EFB58514.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331727|gb|EFB61238.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589468|gb|EFB94557.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A10102]
 gi|282596067|gb|EFC01028.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus C160]
 gi|282762639|gb|EFC02776.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A8117]
 gi|283469817|emb|CAQ49028.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           aureus subsp. aureus ST398]
 gi|283790773|gb|EFC29588.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285816224|gb|ADC36711.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus aureus 04-02981]
 gi|294822812|gb|EFG39247.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A9754]
 gi|294968132|gb|EFG44158.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8819]
 gi|295128850|gb|EFG58480.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|296886707|gb|EFH25612.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176873|gb|EFH36131.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8796]
 gi|297576885|gb|EFH95600.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|302332238|gb|ADL22431.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750416|gb|ADL64593.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339663|gb|EFM05610.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312439057|gb|ADQ78128.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829020|emb|CBX33862.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128816|gb|EFT84815.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315193888|gb|EFU24282.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196665|gb|EFU27012.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141611|gb|EFW33450.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141761|gb|EFW33589.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313245|gb|AEB87658.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727906|gb|EGG64355.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329731020|gb|EGG67393.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329731944|gb|EGG68300.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|320187049|gb|EFW61760.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri CDC 796-83]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|330924340|ref|XP_003300601.1| hypothetical protein PTT_11890 [Pyrenophora teres f. teres 0-1]
 gi|311325176|gb|EFQ91293.1| hypothetical protein PTT_11890 [Pyrenophora teres f. teres 0-1]
          Length = 790

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L +Y+ GQ DA  +VA A+R +       A L  E  P  + +++GPTGVGKT + +RLA
Sbjct: 487 LRQYVKGQDDALISVANAIRLQR------AGLSGENRPIASFMMLGPTGVGKTEVCKRLA 540

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGR 97
             L   P   I+ ++++F+E   V R
Sbjct: 541 EYLFSTPQAVIRFDMSEFSEKHTVSR 566


>gi|296275770|ref|ZP_06858277.1| ClpA-related protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 255 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 308

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 309 ESMFGDDDAMIRVDMSEFMEKHAVSR 334


>gi|294055281|ref|YP_003548939.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614614|gb|ADE54769.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
          Length = 683

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 225 IPKGVLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDMFE 279


>gi|297201430|ref|ZP_06918827.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|197713837|gb|EDY57871.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|116617528|ref|YP_817899.1| ATP-dependent Zn protease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272271|sp|Q03Z46|FTSH_LEUMM RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116096375|gb|ABJ61526.1| membrane protease FtsH catalytic subunit [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 700

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|30684118|ref|NP_850129.1| ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase
           [Arabidopsis thaliana]
 gi|75328225|sp|Q84WU8|FTSH3_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 3,
           mitochondrial; Short=AtFTSH3; Flags: Precursor
 gi|27754237|gb|AAO22572.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|330253114|gb|AEC08208.1| cell division protease ftsH-3 [Arabidopsis thaliana]
          Length = 809

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 341 LKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 394

Query: 94  YVG 96
           +VG
Sbjct: 395 FVG 397


>gi|15829250|ref|NP_326610.1| cell division protein FTSH [Mycoplasma pulmonis UAB CTIP]
 gi|38372250|sp|Q98PE4|FTSH_MYCPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|14090194|emb|CAC13952.1| CELL DIVISION PROTEIN FTSH [Mycoplasma pulmonis]
          Length = 725

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            PK ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   +++
Sbjct: 244 FPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVEL-YVGLGAKRV 293


>gi|319745303|gb|EFV97621.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           agalactiae ATCC 13813]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ DA  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 409 KELGNRLKGKVIGQNDAVEAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 462

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 463 LAKQLA 468


>gi|312136744|ref|YP_004004081.1| proteasome-activating nucleotidase [Methanothermus fervidus DSM
           2088]
 gi|311224463|gb|ADP77319.1| Proteasome-activating nucleotidase [Methanothermus fervidus DSM
           2088]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FIKV  ++F    Y+G    +++R++ ++A
Sbjct: 185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKVVASEFVR-KYIGEGA-RLVREVFELA 240


>gi|297826289|ref|XP_002881027.1| hypothetical protein ARALYDRAFT_344684 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326866|gb|EFH57286.1| hypothetical protein ARALYDRAFT_344684 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ +VG
Sbjct: 363 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 406


>gi|293372244|ref|ZP_06618629.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CMC 3f]
 gi|292632686|gb|EFF51279.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CMC 3f]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 210 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 266


>gi|258422629|ref|ZP_05685535.1| endopeptidase [Staphylococcus aureus A9635]
 gi|257847201|gb|EEV71209.1| endopeptidase [Staphylococcus aureus A9635]
          Length = 818

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDDDAMIRVDMSEFMEKHAVSR 585


>gi|256841515|ref|ZP_05547022.1| metalloprotease FtsH [Parabacteroides sp. D13]
 gi|256737358|gb|EEU50685.1| metalloprotease FtsH [Parabacteroides sp. D13]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 280


>gi|255007599|ref|ZP_05279725.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis 3_1_12]
 gi|313145292|ref|ZP_07807485.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134059|gb|EFR51419.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 675

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 278


>gi|254496297|ref|ZP_05109184.1| ATP binding protease component ClpA [Legionella drancourtii LLAP12]
 gi|254354485|gb|EET13133.1| ATP binding protease component ClpA [Legionella drancourtii LLAP12]
          Length = 755

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +  +L   + GQ  A  A++ A+   R+  R  Q P            L  GPTGVGK
Sbjct: 453 RNLERDLKLLVYGQDQAITALSSAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA + G   ++ +++++ E   V R
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535


>gi|170681902|ref|YP_001746566.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli SMS-3-5]
 gi|218551441|ref|YP_002385233.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           fergusonii ATCC 35469]
 gi|218702868|ref|YP_002410497.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli IAI39]
 gi|218707782|ref|YP_002415301.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli UMN026]
 gi|291285583|ref|YP_003502401.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O55:H7 str. CB9615]
 gi|293402798|ref|ZP_06646895.1| miaA [Escherichia coli FVEC1412]
 gi|293407898|ref|ZP_06651738.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B354]
 gi|293417674|ref|ZP_06660296.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B185]
 gi|298378328|ref|ZP_06988212.1| tRNA Delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli FVEC1302]
 gi|300899709|ref|ZP_07117935.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 198-1]
 gi|300940658|ref|ZP_07155219.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 21-1]
 gi|331655999|ref|ZP_08356987.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli M718]
 gi|331671321|ref|ZP_08372119.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA280]
 gi|331681190|ref|ZP_08381827.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H299]
 gi|226704725|sp|B7NTM7|MIAA_ECO7I RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226704727|sp|B7NGA5|MIAA_ECOLU RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226704728|sp|B1LQJ1|MIAA_ECOSM RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226704729|sp|B7LLV3|MIAA_ESCF3 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|170519620|gb|ACB17798.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli SMS-3-5]
 gi|209750294|gb|ACI73454.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli]
 gi|218358983|emb|CAQ91643.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia fergusonii ATCC 35469]
 gi|218372854|emb|CAR20734.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli IAI39]
 gi|218434879|emb|CAR15817.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli UMN026]
 gi|284924353|emb|CBG37469.1| tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
           [Escherichia coli 042]
 gi|290765456|gb|ADD59417.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O55:H7 str. CB9615]
 gi|291429713|gb|EFF02727.1| miaA [Escherichia coli FVEC1412]
 gi|291430392|gb|EFF03390.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B185]
 gi|291472149|gb|EFF14631.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B354]
 gi|298280662|gb|EFI22163.1| tRNA Delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli FVEC1302]
 gi|300356720|gb|EFJ72590.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 198-1]
 gi|300454546|gb|EFK18039.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 21-1]
 gi|320660519|gb|EFX27980.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|323189950|gb|EFZ75228.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli RN587/1]
 gi|323975488|gb|EGB70589.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TW10509]
 gi|325499707|gb|EGC97566.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia fergusonii ECD227]
 gi|331046353|gb|EGI18443.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli M718]
 gi|331071166|gb|EGI42523.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA280]
 gi|331081411|gb|EGI52572.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H299]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|118487324|gb|ABK95490.1| unknown [Populus trichocarpa]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 220

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|108759619|ref|YP_632532.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
 gi|123374355|sp|Q1D491|FTSH_MYXXD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|108463499|gb|ABF88684.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L++G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLMMGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|254975613|ref|ZP_05272085.1| chaperone [Clostridium difficile QCD-66c26]
 gi|255093001|ref|ZP_05322479.1| chaperone [Clostridium difficile CIP 107932]
 gi|255314742|ref|ZP_05356325.1| chaperone [Clostridium difficile QCD-76w55]
 gi|255517416|ref|ZP_05385092.1| chaperone [Clostridium difficile QCD-97b34]
 gi|255650526|ref|ZP_05397428.1| chaperone [Clostridium difficile QCD-37x79]
 gi|260683626|ref|YP_003214911.1| chaperone [Clostridium difficile CD196]
 gi|260687286|ref|YP_003218420.1| chaperone [Clostridium difficile R20291]
 gi|306520482|ref|ZP_07406829.1| chaperone [Clostridium difficile QCD-32g58]
 gi|260209789|emb|CBA63611.1| chaperone [Clostridium difficile CD196]
 gi|260213303|emb|CBE04864.1| chaperone [Clostridium difficile R20291]
          Length = 864

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 12/88 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELHKRVIGQDEAVTAVSNAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LAR    +    I+++++++ E   V R
Sbjct: 625 LARNLFDSDDNIIRIDMSEYMEKHAVSR 652


>gi|3461848|gb|AAC33234.1| putative AAA-type ATPase [Arabidopsis thaliana]
          Length = 807

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 339 LKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 392

Query: 94  YVG 96
           +VG
Sbjct: 393 FVG 395


>gi|145053|gb|AAA23341.1| ATP-dependent protease [Dichelobacter nodosus]
          Length = 731

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L+  ++GQ+ A  AVA A+R NR       A L D   P  + L +GPTGVGKT + R L
Sbjct: 568 LNERVVGQKTAVEAVANAIRRNR-------AGLSDPKRPIGSFLFLGPTGVGKTELCRTL 620

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    +    +++++++F E   V R
Sbjct: 621 AQFLFDSEENMVRIDMSEFMEKHSVAR 647


>gi|78042824|ref|YP_360978.1| AAA family ATPase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994939|gb|ABB13838.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
           +PKNI+L GP G GKT  +R +A+  G PF  V  +     G +    E+ + +L   A 
Sbjct: 192 VPKNIILYGPPGNGKTNFARTVAQAYGLPFFVVNASAIISSGQLVGAAEKTLLELFANAK 251

Query: 111 -----------INIVRESRRDEVREQAS 127
                      I+ + + RR E    AS
Sbjct: 252 ALRPAIIFFDEIDAIAKKRRAETLNSAS 279


>gi|311067883|ref|YP_003972806.1| ATP-dependent Clp protease [Bacillus atrophaeus 1942]
 gi|310868400|gb|ADP31875.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           atrophaeus 1942]
          Length = 700

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L   +IGQ+ A + VA A+R R R     A L+ +  P    L VGPTGVGKT 
Sbjct: 402 KELEAKLHERVIGQEAAVQKVAKAVR-RSR-----AGLKSKNRPVGTFLFVGPTGVGKTE 455

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGRN 98
           +S+ LA  L G     I+++++++ E            GYVG +
Sbjct: 456 LSKTLADELFGTKDSIIRLDMSEYMEKHAVSKIIGSPPGYVGHD 499


>gi|310821983|ref|YP_003954341.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395055|gb|ADO72514.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 639

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L++G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 187 IPKGVLMMGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241


>gi|301309366|ref|ZP_07215308.1| putative cell division protein FtsH [Bacteroides sp. 20_3]
 gi|300832455|gb|EFK63083.1| putative cell division protein FtsH [Bacteroides sp. 20_3]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 280


>gi|295132678|ref|YP_003583354.1| cell division protease FtsH [Zunongwangia profunda SM-A87]
 gi|294980693|gb|ADF51158.1| cell division protease FtsH [Zunongwangia profunda SM-A87]
          Length = 681

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|262408311|ref|ZP_06084858.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262353863|gb|EEZ02956.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|254581898|ref|XP_002496934.1| ZYRO0D11528p [Zygosaccharomyces rouxii]
 gi|238939826|emb|CAR28001.1| ZYRO0D11528p [Zygosaccharomyces rouxii]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P+ +LL GP G GKT + + +A    A 
Sbjct: 204 IQKQEIREAVELPLTQADLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSTSAA 258

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F    Y+G    +++RD+  +A
Sbjct: 259 FIRVNGSEFVH-KYLGEG-PRMVRDVFRLA 286


>gi|237714479|ref|ZP_04544960.1| metalloprotease FtsH [Bacteroides sp. D1]
 gi|294645938|ref|ZP_06723609.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CC 2a]
 gi|294805892|ref|ZP_06764762.1| ATP-dependent metallopeptidase HflB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445643|gb|EEO51434.1| metalloprotease FtsH [Bacteroides sp. D1]
 gi|292638738|gb|EFF57085.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CC 2a]
 gi|294446921|gb|EFG15518.1| ATP-dependent metallopeptidase HflB [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 210 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 266


>gi|190573712|ref|YP_001971557.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011634|emb|CAQ45253.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
          Length = 646

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 198 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 254


>gi|119944573|ref|YP_942253.1| ATP-dependent metalloprotease FtsH [Psychromonas ingrahamii 37]
 gi|119863177|gb|ABM02654.1| membrane protease FtsH catalytic subunit [Psychromonas ingrahamii
           37]
          Length = 663

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|154706915|ref|YP_001425322.1| ClpB [Coxiella burnetii Dugway 5J108-111]
 gi|154356201|gb|ABS77663.1| ClpB [Coxiella burnetii Dugway 5J108-111]
          Length = 859

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 566 TELHKRVIGQDEAVNAVANAIR-RSR-----AGLSDPNRPVGSFLFLGPTGVGKTELCKA 619

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 620 LAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|45200823|ref|NP_986393.1| AGL274Wp [Ashbya gossypii ATCC 10895]
 gi|44985521|gb|AAS54217.1| AGL274Wp [Ashbya gossypii ATCC 10895]
          Length = 732

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++I
Sbjct: 298 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKRI 347


>gi|89075037|ref|ZP_01161478.1| putative clpB, ATPase with chaperone activity [Photobacterium sp.
           SKA34]
 gi|89049124|gb|EAR54689.1| putative clpB, ATPase with chaperone activity [Photobacterium sp.
           SKA34]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHHRVIGQDEAVVAVANAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTELCKSL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
 gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA   G  F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 193 PKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVD-KYIGESA-KIIREMFGYA 248


>gi|25011418|ref|NP_735813.1| hypothetical protein gbs1376 [Streptococcus agalactiae NEM316]
 gi|76787079|ref|YP_329946.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           agalactiae A909]
 gi|77406711|ref|ZP_00783750.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae H36B]
 gi|24412956|emb|CAD47035.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562136|gb|ABA44720.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           agalactiae A909]
 gi|77174674|gb|EAO77504.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae H36B]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ DA  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 409 KELGNRLKGKVIGQNDAVEAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 462

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 463 LAKQLA 468


>gi|16131993|ref|NP_418592.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|74314656|ref|YP_313075.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella sonnei
           Ss046]
 gi|82546588|ref|YP_410535.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella boydii
           Sb227]
 gi|89110891|ref|AP_004671.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|157157755|ref|YP_001465669.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E24377A]
 gi|157163634|ref|YP_001460952.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli HS]
 gi|170021819|ref|YP_001726773.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli ATCC 8739]
 gi|170083617|ref|YP_001732937.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188495253|ref|ZP_03002523.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 53638]
 gi|193066035|ref|ZP_03047093.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E22]
 gi|193070867|ref|ZP_03051799.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E110019]
 gi|194434582|ref|ZP_03066839.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           dysenteriae 1012]
 gi|194439532|ref|ZP_03071606.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 101-1]
 gi|209921659|ref|YP_002295743.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli SE11]
 gi|218556723|ref|YP_002389637.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli IAI1]
 gi|218697920|ref|YP_002405587.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 55989]
 gi|238903278|ref|YP_002929074.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli BW2952]
 gi|253775204|ref|YP_003038035.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037185|ref|ZP_04871262.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp.
           1_1_43]
 gi|254164100|ref|YP_003047208.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B str. REL606]
 gi|256019816|ref|ZP_05433681.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella sp.
           D9]
 gi|256025106|ref|ZP_05438971.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp.
           4_1_40B]
 gi|260847001|ref|YP_003224779.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|293476482|ref|ZP_06664890.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B088]
 gi|297517573|ref|ZP_06935959.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli OP50]
 gi|300816529|ref|ZP_07096750.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 107-1]
 gi|300821262|ref|ZP_07101410.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 119-7]
 gi|300906000|ref|ZP_07123724.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 84-1]
 gi|300920805|ref|ZP_07137206.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 115-1]
 gi|300922423|ref|ZP_07138543.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 182-1]
 gi|300929278|ref|ZP_07144754.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 187-1]
 gi|300949130|ref|ZP_07163172.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 116-1]
 gi|300957830|ref|ZP_07170008.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 175-1]
 gi|301027993|ref|ZP_07191277.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 196-1]
 gi|301302587|ref|ZP_07208717.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 124-1]
 gi|301325934|ref|ZP_07219355.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 78-1]
 gi|301646616|ref|ZP_07246482.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 146-1]
 gi|307140865|ref|ZP_07500221.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H736]
 gi|307314881|ref|ZP_07594473.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli W]
 gi|309796982|ref|ZP_07691382.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 145-7]
 gi|312965844|ref|ZP_07780070.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 2362-75]
 gi|331644918|ref|ZP_08346035.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H736]
 gi|331671076|ref|ZP_08371909.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA271]
 gi|331680301|ref|ZP_08380960.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H591]
 gi|332280955|ref|ZP_08393368.1| tRNA delta-2-isopentenylpyrophosphate transferase [Shigella sp. D9]
 gi|127087|sp|P16384|MIAA_ECOLI RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|123557917|sp|Q31TA1|MIAA_SHIBS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|123615505|sp|Q3YUH2|MIAA_SHISS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|167011774|sp|A7ZV40|MIAA_ECO24 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|167011775|sp|A8A7R5|MIAA_ECOHS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|189081952|sp|B1IT35|MIAA_ECOLC RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226700798|sp|B6I275|MIAA_ECOSE RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226704726|sp|B7M8T1|MIAA_ECO8A RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|229621758|sp|B1XDS2|MIAA_ECODH RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|239977373|sp|B7LC30|MIAA_ECO55 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|239977571|sp|Q0SXB1|MIAA_SHIF8 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|259495765|sp|C4ZR48|MIAA_ECOBW RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|221046906|pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
           Complex With E. Coli Trna(Phe)
 gi|221046907|pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
           Complex With E. Coli Trna(Phe)
 gi|238537730|pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
           Complex With Trna(Phe) And Dmaspp
 gi|238537731|pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
           Complex With Trna(Phe) And Dmaspp
 gi|146860|gb|AAA24174.1| delta-2-isopentenyl pyrophosphate transferase [Escherichia coli]
 gi|537012|gb|AAA97067.1| tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1790613|gb|AAC77128.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|2506034|dbj|BAA22627.1| tRNA delta 2-isopentenylpyrophosphate transferase [Shigella
           flexneri]
 gi|73858133|gb|AAZ90840.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Shigella sonnei Ss046]
 gi|81247999|gb|ABB68707.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Shigella boydii Sb227]
 gi|85676922|dbj|BAE78172.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K12 substr. W3110]
 gi|157069314|gb|ABV08569.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli HS]
 gi|157079785|gb|ABV19493.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E24377A]
 gi|169756747|gb|ACA79446.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli ATCC 8739]
 gi|169891452|gb|ACB05159.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188490452|gb|EDU65555.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 53638]
 gi|192926358|gb|EDV80994.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E22]
 gi|192955813|gb|EDV86284.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E110019]
 gi|194417167|gb|EDX33279.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           dysenteriae 1012]
 gi|194421531|gb|EDX37544.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 101-1]
 gi|209914918|dbj|BAG79992.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli SE11]
 gi|218354652|emb|CAV01642.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli 55989]
 gi|218363492|emb|CAR01146.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli IAI1]
 gi|226840291|gb|EEH72293.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp.
           1_1_43]
 gi|238860744|gb|ACR62742.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli BW2952]
 gi|242379693|emb|CAQ34517.1| tRNA(i[6]A37) synthase [Escherichia coli BL21(DE3)]
 gi|253326248|gb|ACT30850.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976001|gb|ACT41672.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B str. REL606]
 gi|253980157|gb|ACT45827.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli BL21(DE3)]
 gi|257762148|dbj|BAI33645.1| delta(2)-isopentenylpyrophosphate tRNA-adenosinetransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260451002|gb|ACX41424.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli DH1]
 gi|291320935|gb|EFE60377.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B088]
 gi|299878903|gb|EFI87114.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 196-1]
 gi|300315461|gb|EFJ65245.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 175-1]
 gi|300402167|gb|EFJ85705.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 84-1]
 gi|300412228|gb|EFJ95538.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 115-1]
 gi|300421242|gb|EFK04553.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 182-1]
 gi|300451378|gb|EFK14998.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 116-1]
 gi|300462771|gb|EFK26264.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 187-1]
 gi|300526151|gb|EFK47220.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 119-7]
 gi|300530759|gb|EFK51821.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 107-1]
 gi|300842112|gb|EFK69872.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 124-1]
 gi|300847287|gb|EFK75047.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 78-1]
 gi|301075163|gb|EFK89969.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 146-1]
 gi|306905684|gb|EFN36213.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli W]
 gi|308119395|gb|EFO56657.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 145-7]
 gi|309704676|emb|CBJ04026.1| tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
           [Escherichia coli ETEC H10407]
 gi|312289087|gb|EFR16981.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 2362-75]
 gi|315063485|gb|ADT77812.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli W]
 gi|315138725|dbj|BAJ45884.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli DH1]
 gi|315255515|gb|EFU35483.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 85-1]
 gi|320173675|gb|EFW48865.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           dysenteriae CDC 74-1112]
 gi|320180684|gb|EFW55611.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella boydii
           ATCC 9905]
 gi|320193551|gb|EFW68188.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli WV_060327]
 gi|323161960|gb|EFZ47832.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E128010]
 gi|323166653|gb|EFZ52411.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella sonnei
           53G]
 gi|323182277|gb|EFZ67687.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 1357]
 gi|323380436|gb|ADX52704.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli KO11]
 gi|323935401|gb|EGB31745.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E1520]
 gi|323940090|gb|EGB36284.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E482]
 gi|323946019|gb|EGB42056.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H120]
 gi|323960320|gb|EGB55960.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H489]
 gi|323965557|gb|EGB61011.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli M863]
 gi|323970574|gb|EGB65833.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA007]
 gi|324019349|gb|EGB88568.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 117-3]
 gi|324118736|gb|EGC12628.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli E1167]
 gi|327250111|gb|EGE61830.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli STEC_7v]
 gi|331035893|gb|EGI08131.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H736]
 gi|331061665|gb|EGI33591.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA271]
 gi|331071764|gb|EGI43100.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H591]
 gi|332087193|gb|EGI92327.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella boydii
           3594-74]
 gi|332103307|gb|EGJ06653.1| tRNA delta-2-isopentenylpyrophosphate transferase [Shigella sp. D9]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|323171602|gb|EFZ57248.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli LT-68]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|320655012|gb|EFX22973.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVGLISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|294340418|emb|CAZ88799.1| Cell division protease ftsH [Thiomonas sp. 3As]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLAKSIAGEAKVPFFTISGSDFVEM-FVGVGAAR-VRDMFENA 244


>gi|150008468|ref|YP_001303211.1| metalloprotease FtsH [Parabacteroides distasonis ATCC 8503]
 gi|310946752|sp|A6LD25|FTSH_PARD8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|149936892|gb|ABR43589.1| AAA-metalloprotease FtsH, with ATPase domain [Parabacteroides
           distasonis ATCC 8503]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 280


>gi|90419586|ref|ZP_01227496.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336523|gb|EAS50264.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 820

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L R + GQ  A  ++A A++         A LR+   P  + L  GPTGVGKT ++R+
Sbjct: 465 AQLKRVVYGQDAAIGSLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQ 518

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 519 LAAALGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 571


>gi|162606568|ref|XP_001713314.1| 26S protease regulatory SU 7 [Guillardia theta]
 gi|12580780|emb|CAC27098.1| 26S protease regulatory SU 7 [Guillardia theta]
          Length = 394

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  LL GP G GKT ++R +A    A F+K+  ++  +  Y+G    +++R+L +++
Sbjct: 170 PKGALLYGPPGTGKTLVARAVANKTNASFVKINCSELVQ-KYIGEGA-RLVRELFNLS 225


>gi|15897214|ref|NP_341819.1| proteasome-activating nucleotidase [Sulfolobus solfataricus P2]
 gi|284174460|ref|ZP_06388429.1| proteasome-activating nucleotidase [Sulfolobus solfataricus 98/2]
 gi|20532213|sp|Q980M1|PAN_SULSO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|13813411|gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601882|gb|ACX91485.1| 26S proteasome subunit P45 family [Sulfolobus solfataricus 98/2]
          Length = 393

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +I+R+L ++A
Sbjct: 168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQ-KFVGEGA-RIVRELFEMA 223


>gi|76799283|ref|ZP_00781451.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 18RS21]
 gi|76585360|gb|EAO61950.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 18RS21]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ DA  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 409 KELGNRLKGKVIGQNDAVEAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 462

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 463 LAKQLA 468


>gi|158312055|ref|YP_001504563.1| ATPase [Frankia sp. EAN1pec]
 gi|158107460|gb|ABW09657.1| ATPase AAA-2 domain protein [Frankia sp. EAN1pec]
          Length = 834

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ+ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHRRVIGQEQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDSLIQLDMSEYMEKHTVSRLV 592


>gi|330507008|ref|YP_004383436.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328927816|gb|AEB67618.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 758

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 29  AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88
           AV   LRN    Q+L  D      PK ILL GP G GKT +++ +A  + A FI V+ + 
Sbjct: 497 AVEWPLRNAESFQRLGID-----APKGILLYGPPGTGKTMLAKAVANESEANFITVKGSA 551

Query: 89  FTEIGY--VGRNVEQIIRDLVDVAINIV 114
                Y    + VE+I R    VA +I+
Sbjct: 552 LLSKWYGESEKRVEEIFRKARQVAPSII 579


>gi|324513453|gb|ADY45528.1| Fidgetin-like protein 1 [Ascaris suum]
          Length = 507

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   +VG   E+++R L  VA
Sbjct: 262 PKGVLLFGPPGTGKTMIGRCVAAQCNATFFNIAASSLTS-KWVGEG-EKLVRVLFAVA 317


>gi|320167662|gb|EFW44561.1| 26S protease regulatory subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 440

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++RDL D+A
Sbjct: 216 PKGVLLFGPPGTGKTLSARAVANRTDACFIRVIGSELVQ-KYVGEGA-RLVRDLFDMA 271


>gi|314932748|ref|ZP_07840117.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           caprae C87]
 gi|313654429|gb|EFS18182.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           caprae C87]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHNRVIGQNDAVNSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|303232397|ref|ZP_07319089.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
 gi|302481481|gb|EFL44549.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
          Length = 806

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 342 IPRGVLLVGAPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 398


>gi|298480320|ref|ZP_06998518.1| cell division protein FtsH [Bacteroides sp. D22]
 gi|298273601|gb|EFI15164.1| cell division protein FtsH [Bacteroides sp. D22]
          Length = 716

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|295086617|emb|CBK68140.1| ATP-dependent metalloprotease FtsH [Bacteroides xylanisolvens XB1A]
          Length = 719

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 287


>gi|302553198|ref|ZP_07305540.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
 gi|302470816|gb|EFL33909.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|308233642|ref|ZP_07664379.1| membrane protease FtsH catalytic subunit [Atopobium vaginae DSM
           15829]
 gi|328944405|ref|ZP_08241867.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|327490989|gb|EGF22766.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 281 IPRGVLLVGAPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 337


>gi|189189086|ref|XP_001930882.1| heat shock protein 78, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972488|gb|EDU39987.1| heat shock protein 78, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 790

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L +Y+ GQ DA  +VA A+R +       A L  E  P  + +++GPTGVGKT + +RLA
Sbjct: 487 LRQYVKGQDDALISVANAIRLQR------AGLSGENRPIASFMMLGPTGVGKTEVCKRLA 540

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGR 97
             L   P   I+ ++++F+E   V R
Sbjct: 541 EYLFSTPQAVIRFDMSEFSEKHTVSR 566


>gi|168704817|ref|ZP_02737094.1| cell division protein FtsH [Gemmata obscuriglobus UQM 2246]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  ++F ++ +VG    + +RD+   A
Sbjct: 243 VPKGVLLVGPPGTGKTLLAKAVAGEANVPFFAISGSEFIQM-FVGVGASR-VRDMFRTA 299


>gi|167392334|ref|XP_001740108.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165895900|gb|EDR23483.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    + F++V  ++  +  YVG    +++RDL D+A
Sbjct: 194 PKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQ-KYVGEGA-KMVRDLFDMA 249


>gi|168001423|ref|XP_001753414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695293|gb|EDQ81637.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  AG PF     ++F E+ +VG
Sbjct: 241 LPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVG 284


>gi|191165623|ref|ZP_03027463.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B7A]
 gi|190904318|gb|EDV64027.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli B7A]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|294630658|ref|ZP_06709218.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. e14]
 gi|292833991|gb|EFF92340.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. e14]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|258513609|ref|YP_003189831.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777314|gb|ACV61208.1| ATPase AAA-2 domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 810

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A RAV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 511 LHQRVIGQEEAVRAVSRAVR-RAR-----AGLKDPGRPVGSFIFLGPTGVGKTELARALA 564

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     I+++++++ E   V R V
Sbjct: 565 EALFGDDDALIRIDMSEYMEKYAVSRLV 592


>gi|296136183|ref|YP_003643425.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
 gi|295796305|gb|ADG31095.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGPPGTGKTLLAKSIAGEAKVPFFTISGSDFVEM-FVGVGAAR-VRDMFENA 244


>gi|255719057|ref|XP_002555809.1| KLTH0G17930p [Lachancea thermotolerans]
 gi|238937193|emb|CAR25372.1| KLTH0G17930p [Lachancea thermotolerans]
          Length = 358

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ +LL GP G GKT I++ LA+ +GA FI + ++   +  Y
Sbjct: 126 PRGVLLHGPPGCGKTMIAKALAKESGATFISIRMSSIMDKWY 167


>gi|256419512|ref|YP_003120165.1| ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
 gi|256034420|gb|ACU57964.1| ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 234 IPKGALLVGPPGTGKTLLAKAMAGEAQVPFFSMSGSDFVEL-FVGVGASR-VRDLFKQA 290


>gi|254521600|ref|ZP_05133655.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
 gi|219719191|gb|EED37716.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 249


>gi|195155851|ref|XP_002018814.1| GL25749 [Drosophila persimilis]
 gi|194114967|gb|EDW37010.1| GL25749 [Drosophila persimilis]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 37/163 (22%)

Query: 24  QDAKRAVAIALRNR--------WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           Q+ K  V + +R+R        WR             P  +LL GP G GKT I++ +A+
Sbjct: 115 QELKETVVLPVRHRELLKQSHLWR------------APMGVLLHGPPGCGKTLIAKAIAK 162

Query: 76  LAGAPFIKVEVTKFTEIGY------------VGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            AG  FI V++   T+  Y            + R +E  I   +D   +++R  R+++  
Sbjct: 163 EAGMRFINVDLAILTDQWYGESEKLVAAVFSLARKLEPAII-FIDEIDSLLRARRQNDHE 221

Query: 124 EQASINAE-ERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
             A +  +  R+ D LV  T+ ++T  V     R G++ DK I
Sbjct: 222 ATAMMKTQFMRLWDGLV--TSQNSTVIVLGATNRPGDL-DKAI 261


>gi|187928785|ref|YP_001899272.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|310946758|sp|B2UE66|FTSH_RALPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|187725675|gb|ACD26840.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
          Length = 714

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 272 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGAAR-VRDLFKQA 328


>gi|170017771|ref|YP_001728690.1| membrane ATPase FtsH [Leuconostoc citreum KM20]
 gi|169804628|gb|ACA83246.1| Membrane ATPase FtsH [Leuconostoc citreum KM20]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|148658380|ref|YP_001278585.1| ATPase [Roseiflexus sp. RS-1]
 gi|148570490|gb|ABQ92635.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1]
          Length = 871

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R LA
Sbjct: 569 LHRRVVGQDEAVSAVANAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELARALA 622

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     I+++++++ E   V R
Sbjct: 623 EFLFDDEQAMIRIDMSEYMEKHTVAR 648


>gi|332882428|ref|ZP_08450053.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679598|gb|EGJ52570.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 219 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 271


>gi|330998242|ref|ZP_08322068.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
 gi|329568934|gb|EGG50732.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 219 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 271


>gi|308048519|ref|YP_003912085.1| ATP-dependent chaperone ClpB [Ferrimonas balearica DSM 9799]
 gi|307630709|gb|ADN75011.1| ATP-dependent chaperone ClpB [Ferrimonas balearica DSM 9799]
          Length = 857

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT +S+ LA
Sbjct: 566 LHRRVVGQDEAVDAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELSKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 HFMFDSADAMVRIDMSEFMEKHSVARLV 647


>gi|299148332|ref|ZP_07041394.1| putative cell division protein FtsH [Bacteroides sp. 3_1_23]
 gi|298513093|gb|EFI36980.1| putative cell division protein FtsH [Bacteroides sp. 3_1_23]
          Length = 714

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|292900313|ref|YP_003539682.1| chaperone ClpB [Erwinia amylovora ATCC 49946]
 gi|291200161|emb|CBJ47287.1| chaperone ClpB (heat shock protein) [Erwinia amylovora ATCC 49946]
          Length = 857

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQQ+A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHTRVIGQQEAVEAVSDAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|241889127|ref|ZP_04776431.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
 gi|241864376|gb|EER68754.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 200 IPKGVLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDL 252


>gi|227432628|ref|ZP_03914604.1| M41 family endopeptidase FtsH [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351598|gb|EEJ41848.1| M41 family endopeptidase FtsH [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 700

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|221487528|gb|EEE25760.1| AAA ATPase, putative [Toxoplasma gondii GT1]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 47  LRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           LR EL       P+ ILL GP G GKT +++ +A  +GA F   EVT  + I       E
Sbjct: 88  LRPELHVGLHQAPRGILLFGPPGTGKTTLAKWMAASSGASFF--EVTPSSIISKFHGETE 145

Query: 101 QIIRDLVDVA 110
            +I+ L  VA
Sbjct: 146 TLIKALFKVA 155


>gi|171463224|ref|YP_001797337.1| ATP-dependent chaperone ClpB [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192762|gb|ACB43723.1| ATP-dependent chaperone ClpB [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 867

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A RAV+ A+R R R     A L +E  P  + L +GPTGVGKT + + LA
Sbjct: 573 LHKRVVGQEEAIRAVSDAIR-RSR-----AGLAEENRPYGSFLFLGPTGVGKTKLCKALA 626

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 627 GFLFDSEDHLIRIDMSEFMEKHSVAR 652


>gi|83589925|ref|YP_429934.1| vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572839|gb|ABC19391.1| Vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I GQ+ A R +  AL    R +Q+ A     L  K ILL GP G GKT ++R  A    A
Sbjct: 67  IGGQETAIRELKEALEFLLRSKQVRAMGIRPL--KGILLSGPPGTGKTLMARAAATYTDA 124

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
            F+    ++F E+ Y G   ++ +R+L     N  RE  R + +++A I  +E  L+ L 
Sbjct: 125 VFLAASGSEFIEM-YAGVGAQR-VREL----FNRARELARRQQKKRAIIFIDE--LEVLG 176

Query: 140 GKTATSNTREVFRKKLR------DGEISDKEIDIEV 169
           GK  +  +   + + L       DG   D+++ I V
Sbjct: 177 GKRGSHTSHLEYDQTLNQLLVEMDGLKEDQDVQILV 212


>gi|23097548|ref|NP_691014.1| ATP-dependent Clp protease [Oceanobacillus iheyensis HTE831]
 gi|54035854|sp|Q8EU05|CLPB_OCEIH RecName: Full=Chaperone protein ClpB
 gi|22775771|dbj|BAC12049.1| ATP-dependent Clp protease (ATP-binding subunit) [Oceanobacillus
           iheyensis HTE831]
          Length = 809

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 21/92 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           +IGQ +A  AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA +  
Sbjct: 513 VIGQSEAVNAVAKAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMF 566

Query: 79  A---PFIKVEVTKFTE-----------IGYVG 96
           A     I+++++++ E            GYVG
Sbjct: 567 ADEDAMIRIDMSEYMERHATSRLVGSPPGYVG 598


>gi|58264588|ref|XP_569450.1| ATP-dependent peptidase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134109849|ref|XP_776474.1| hypothetical protein CNBC5280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259150|gb|EAL21827.1| hypothetical protein CNBC5280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225682|gb|AAW42143.1| ATP-dependent peptidase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF+    + F E+ +VG   ++ +R+L   A
Sbjct: 356 LPKGVLLTGPPGTGKTMLARAVAGEAEVPFLFASGSSFDEM-FVGVGAKR-VRELFAAA 412


>gi|333029842|ref|ZP_08457903.1| ATP-dependent metalloprotease FtsH [Bacteroides coprosuis DSM
           18011]
 gi|332740439|gb|EGJ70921.1| ATP-dependent metalloprotease FtsH [Bacteroides coprosuis DSM
           18011]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 221 IPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSMAGSDFVEM-FVGVGASR-VRDLFEQA 277


>gi|319956043|ref|YP_004167306.1| ATP-dependent clp protease, ATP-binding subunit clpa
           [Nitratifractor salsuginis DSM 16511]
 gi|319418447|gb|ADV45557.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Nitratifractor salsuginis DSM 16511]
          Length = 733

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I+GQ++A   ++ A++  +      A L     P  + L VGPTGVGKTA+++ LA   G
Sbjct: 448 IVGQEEAITRLSQAIKRSY------AGLNHPESPIGSFLFVGPTGVGKTALAQVLAETLG 501

Query: 79  APFIKVEVTKFTEIGYVGR 97
             F +++++++ E   V R
Sbjct: 502 VHFERLDMSEYMEKHAVSR 520


>gi|262383315|ref|ZP_06076451.1| metalloprotease FtsH [Bacteroides sp. 2_1_33B]
 gi|262294213|gb|EEY82145.1| metalloprotease FtsH [Bacteroides sp. 2_1_33B]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|157962885|ref|YP_001502919.1| ATP-dependent metalloprotease FtsH [Shewanella pealeana ATCC
           700345]
 gi|157847885|gb|ABV88384.1| ATP-dependent metalloprotease FtsH [Shewanella pealeana ATCC
           700345]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|115378592|ref|ZP_01465746.1| cell division protein FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115364420|gb|EAU63501.1| cell division protein FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 658

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L++G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 206 IPKGVLMMGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 260


>gi|302799806|ref|XP_002981661.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
 gi|300150493|gb|EFJ17143.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
          Length = 737

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  A  PF+ +  + F E+ 
Sbjct: 265 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGEASVPFLSISGSDFMEM- 318

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 319 FVGVGPSR-VRDL 330


>gi|241114309|ref|YP_002973784.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|240868882|gb|ACS66540.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 254 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGAAR-VRDLFKQA 310


>gi|224120532|ref|XP_002318353.1| predicted protein [Populus trichocarpa]
 gi|222859026|gb|EEE96573.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 608


>gi|219117433|ref|XP_002179511.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409402|gb|EEC49334.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + A+ + L      QQ+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 142 IQKQEVREAIELPLLQHHLYQQIGID-----PPRGVLLYGPPGTGKTMMAKAVANATKAT 196

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI +  ++F +  Y+G    +++RD+  +A
Sbjct: 197 FISMVGSEFVQ-KYLGEG-PRMVRDVFRLA 224


>gi|219850937|ref|YP_002465369.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545196|gb|ACL15646.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 810

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
            +Q+ + AV   L +R R + L  +      PK +LL GP G GKT I++  A  +GA F
Sbjct: 470 AKQEVREAVEYPLTDRTRFEVLGIE-----PPKGVLLYGPPGTGKTLIAKAAAHESGANF 524

Query: 82  IKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
           I V   +     +G   R V +I +    VA +++
Sbjct: 525 IPVRGPQLLSKWVGESERAVREIFKKARQVAPSLI 559



 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT I++ +A  +GA FI +
Sbjct: 223 PKGVLLYGPPGTGKTLIAKAVASESGAHFIAI 254


>gi|237830311|ref|XP_002364453.1| AAA family ATPase, putative [Toxoplasma gondii ME49]
 gi|211962117|gb|EEA97312.1| AAA family ATPase, putative [Toxoplasma gondii ME49]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 47  LRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           LR EL       P+ ILL GP G GKT +++ +A  +GA F   EVT  + I       E
Sbjct: 88  LRPELHVGLHQAPRGILLFGPPGTGKTTLAKWMAASSGASFF--EVTPSSIISKFHGETE 145

Query: 101 QIIRDLVDVA 110
            +I+ L  VA
Sbjct: 146 TLIKALFKVA 155


>gi|192361874|ref|YP_001983133.1| cell division protein FtsH [Cellvibrio japonicus Ueda107]
 gi|190688039|gb|ACE85717.1| cell division protein FtsH [Cellvibrio japonicus Ueda107]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|170740499|ref|YP_001769154.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium sp. 4-46]
 gi|168194773|gb|ACA16720.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium sp. 4-46]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 18/115 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R + GQ +A  A+  +++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 466 LTDSLKRVVYGQDNAIEALTASIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 KQLASALGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574


>gi|311748094|ref|ZP_07721879.1| putative cell division protein FtsH [Algoriphagus sp. PR1]
 gi|126574738|gb|EAZ79119.1| putative cell division protein FtsH [Algoriphagus sp. PR1]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 IPKGALLVGPPGTGKTLLAKAVAGEAAVPFFTLSGSDFVEM-FVGVGAAR-VRDLFKQA 287


>gi|194365245|ref|YP_002027855.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
 gi|194348049|gb|ACF51172.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
          Length = 644

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|170727901|ref|YP_001761927.1| ATP-dependent metalloprotease FtsH [Shewanella woodyi ATCC 51908]
 gi|169813248|gb|ACA87832.1| ATP-dependent metalloprotease FtsH [Shewanella woodyi ATCC 51908]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|329117468|ref|ZP_08246185.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           parauberis NCFD 2020]
 gi|326907873|gb|EGE54787.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           parauberis NCFD 2020]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A +AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 407 KEIGNRLRGHVIGQDQAVQAVAKAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 459

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 460 ELAKQLA 466


>gi|319783683|ref|YP_004143159.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169571|gb|ADV13109.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 822

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT ++++L
Sbjct: 470 ELKRVVYGQDTAITALTSAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQL 523

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   I+ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 524 AASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 575


>gi|317496223|ref|ZP_07954583.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
 gi|316913798|gb|EFV35284.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 200 IPKGVLLEGPPGTGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFKEA 256


>gi|305682341|dbj|BAJ16258.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+                +  I
Sbjct: 29  GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQDFIQI 88

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           +T ++LFI  GAF            Q        +KS +  D+  IL + E++
Sbjct: 89  DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEAD 141


>gi|296112664|ref|YP_003626602.1| cell division protease FtsH [Moraxella catarrhalis RH4]
 gi|295920358|gb|ADG60709.1| cell division protease FtsH [Moraxella catarrhalis RH4]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|294786618|ref|ZP_06751872.1| putative cell division protein [Parascardovia denticolens F0305]
 gi|315226205|ref|ZP_07867993.1| cell division protein FtsH [Parascardovia denticolens DSM 10105]
 gi|294485451|gb|EFG33085.1| putative cell division protein [Parascardovia denticolens F0305]
 gi|315120337|gb|EFT83469.1| cell division protein FtsH [Parascardovia denticolens DSM 10105]
          Length = 801

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 270 IPRGVLLYGQPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 326


>gi|224131152|ref|XP_002328467.1| predicted protein [Populus trichocarpa]
 gi|222838182|gb|EEE76547.1| predicted protein [Populus trichocarpa]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           PK +LL GP G GKT +++ +A  AG PF     T F E+ +VG
Sbjct: 35 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEM-FVG 78


>gi|221507322|gb|EEE32926.1| 26S protease regulatory subunit, putative [Toxoplasma gondii VEG]
          Length = 210

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 47  LRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
           LR EL       P+ ILL GP G GKT +++ +A  +GA F   EVT  + I       E
Sbjct: 44  LRPELHVGLHQAPRGILLFGPPGTGKTTLAKWMAASSGASFF--EVTPSSIISKFHGETE 101

Query: 101 QIIRDLVDVA 110
            +I+ L  VA
Sbjct: 102 TLIKALFKVA 111


>gi|167574957|ref|ZP_02367831.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis C6786]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|326560922|gb|EGE11287.1| cell division protease FtsH [Moraxella catarrhalis 7169]
 gi|326571268|gb|EGE21290.1| cell division protease FtsH [Moraxella catarrhalis BC1]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|312130473|ref|YP_003997813.1| membrane protease ftsh catalytic subunit [Leadbetterella byssophila
           DSM 17132]
 gi|311907019|gb|ADQ17460.1| membrane protease FtsH catalytic subunit [Leadbetterella byssophila
           DSM 17132]
          Length = 658

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 233 IPKGALLVGPPGTGKTLMAKAVAGEASVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 289


>gi|308506593|ref|XP_003115479.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
 gi|308256014|gb|EFO99966.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
          Length = 595

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   +VG   E+++R L  VA
Sbjct: 351 PKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTS-KWVGEG-EKLVRALFSVA 406


>gi|262376115|ref|ZP_06069345.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           lwoffii SH145]
 gi|262308716|gb|EEY89849.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           lwoffii SH145]
          Length = 758

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R + GQ +A  A+A A++         A L+    P  + +  GPTGVGKT ++++L
Sbjct: 454 DLKRVVFGQDEAIEALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 507

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A+  G   ++ +++++ E   V R
Sbjct: 508 AKQMGVELVRFDMSEYMERHAVSR 531


>gi|226489470|emb|CAX75879.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
          Length = 306

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 169 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 223

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 224 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|253742508|gb|EES99337.1| Midasin [Giardia intestinalis ATCC 50581]
          Length = 4833

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109
           +LLVGPTG+GKT   + +AR  G     V ++  T+      GYV   ++ I+R L D  
Sbjct: 352 LLLVGPTGIGKTTCLQIVARALGKKLHVVNMSSQTDAADLLGGYVPATLDHILRSLYDAI 411

Query: 110 ----AINIVRESRRDEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDG 158
                + I  +  +  V E      E+ I   L   +TA S  ++V +K+ +D 
Sbjct: 412 TGSFGLYISVKKNQTFVTELQRSYLEKDISKFLANCETALSGMKQVLKKEAKDA 465


>gi|255723800|ref|XP_002546829.1| hypothetical protein CTRG_01134 [Candida tropicalis MYA-3404]
 gi|240134720|gb|EER34274.1| hypothetical protein CTRG_01134 [Candida tropicalis MYA-3404]
          Length = 923

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 493 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 549


>gi|226328446|ref|ZP_03803964.1| hypothetical protein PROPEN_02340 [Proteus penneri ATCC 35198]
 gi|225203179|gb|EEG85533.1| hypothetical protein PROPEN_02340 [Proteus penneri ATCC 35198]
          Length = 428

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAI 69
           E+ S L +Y+IGQ +A   +A+A R R  R      L  E  P+ + LLVGP+G+GKT  
Sbjct: 191 ELESNLSKYVIGQDNA--LLALAQRLRASR----TGLVSENGPQGVFLLVGPSGIGKTET 244

Query: 70  SRRLAR-LAGAP--FIKVEVTKFTEIGYVGR 97
           +  LA  L G P   I + ++++ E   V +
Sbjct: 245 ALALAECLFGGPKSLITINMSEYQEAHTVSQ 275


>gi|110597287|ref|ZP_01385575.1| AAA ATPase, central region:ATPase associated with various cellular
           activities, AAA_5 [Chlorobium ferrooxidans DSM 13031]
 gi|110341123|gb|EAT59591.1| AAA ATPase, central region:ATPase associated with various cellular
           activities, AAA_5 [Chlorobium ferrooxidans DSM 13031]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 7/64 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ+DA  AV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEQELHKRVIGQEDAVTAVSEAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLA 74
           R LA
Sbjct: 189 RALA 192


>gi|88608851|ref|YP_506309.1| ATP-dependent metalloprotease FtsH [Neorickettsia sennetsu str.
           Miyayama]
 gi|88601020|gb|ABD46488.1| ATP-dependent metalloprotease FtsH [Neorickettsia sennetsu str.
           Miyayama]
          Length = 636

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGCLLIGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|332763218|gb|EGJ93461.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 2930-71]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSVLIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|321315125|ref|YP_004207412.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           subtilis BSn5]
 gi|320021399|gb|ADV96385.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           subtilis BSn5]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L   +IGQ+ A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 401 KELEAKLHERVIGQEAAVQKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 454

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+ LA  L G     I+++++++ E            GYVG 
Sbjct: 455 LSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGH 497


>gi|309783422|ref|ZP_07678128.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|308917821|gb|EFP63512.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 765

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL   A
Sbjct: 204 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGAAR-VRDLFKQA 260


>gi|260171830|ref|ZP_05758242.1| metalloprotease FtsH [Bacteroides sp. D2]
 gi|315920142|ref|ZP_07916382.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694017|gb|EFS30852.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 716

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|302559271|ref|ZP_07311613.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           griseoflavus Tu4000]
 gi|302476889|gb|EFL39982.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           griseoflavus Tu4000]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|255014267|ref|ZP_05286393.1| metalloprotease FtsH [Bacteroides sp. 2_1_7]
 gi|298376264|ref|ZP_06986220.1| cell division protein FtsH [Bacteroides sp. 3_1_19]
 gi|298267301|gb|EFI08958.1| cell division protein FtsH [Bacteroides sp. 3_1_19]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|256084405|ref|XP_002578420.1| 26S protease regulatory subunit 6b [Schistosoma mansoni]
 gi|238663792|emb|CAZ34658.1| 26S protease regulatory subunit 6b, putative [Schistosoma mansoni]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 169 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 223

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 224 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|90581163|ref|ZP_01236962.1| Putative ComM-related protein [Vibrio angustum S14]
 gi|90437684|gb|EAS62876.1| Putative ComM-related protein [Vibrio angustum S14]
          Length = 312

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 21/80 (26%)

Query: 2   KLTFNFSP--REIVSELDRY---IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI 56
           +L  NFS   +E  + LDR    IIGQQ  KRA+ IA                     NI
Sbjct: 172 QLALNFSEQIKETTAPLDRDMQDIIGQQQGKRALEIAAAGG----------------HNI 215

Query: 57  LLVGPTGVGKTAISRRLARL 76
           L +GP G GKT ++ RL  L
Sbjct: 216 LFLGPPGTGKTMLASRLCDL 235


>gi|116490300|ref|YP_809844.1| ATP-dependent Zn protease [Oenococcus oeni PSU-1]
 gi|116091025|gb|ABJ56179.1| membrane protease FtsH catalytic subunit [Oenococcus oeni PSU-1]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPKGVLLEGPPGTGKTLLAKAVAGEAKTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|333010318|gb|EGK29751.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri VA-6]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|326566514|gb|EGE16660.1| cell division protease FtsH [Moraxella catarrhalis 12P80B1]
 gi|326569820|gb|EGE19870.1| cell division protease FtsH [Moraxella catarrhalis BC8]
 gi|326571574|gb|EGE21589.1| cell division protease FtsH [Moraxella catarrhalis BC7]
 gi|326575146|gb|EGE25074.1| cell division protease FtsH [Moraxella catarrhalis CO72]
 gi|326577556|gb|EGE27433.1| cell division protease FtsH [Moraxella catarrhalis O35E]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|324517047|gb|ADY46711.1| 26S protease regulatory subunit 6B [Ascaris suum]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 175 KQEVREAVELPLTHGELYQQIGID-----PPRGVLMYGPPGCGKTMLAKAVAAHTTASFI 229

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 230 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 255


>gi|322411598|gb|EFY02506.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 410 KEISNRLKGHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 462

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 463 ELAKQLA 469


>gi|253570234|ref|ZP_04847643.1| metalloprotease FtsH [Bacteroides sp. 1_1_6]
 gi|251840615|gb|EES68697.1| metalloprotease FtsH [Bacteroides sp. 1_1_6]
          Length = 714

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 283


>gi|242399566|ref|YP_002994991.1| Tbp-interacting protein tip49 [Thermococcus sibiricus MM 739]
 gi|242265960|gb|ACS90642.1| Tbp-interacting protein tip49 [Thermococcus sibiricus MM 739]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            + +L  K ILLVGPTG GKTAI+  +A+  G 
Sbjct: 39 MVGQTKAREAAGIAVK---------LIKKGKLAGKGILLVGPTGSGKTAIAMGIAKELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|299821023|ref|ZP_07052911.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
           DSM 20601]
 gi|299816688|gb|EFI83924.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
           DSM 20601]
          Length = 821

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+ A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHQRVIGQESAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|269128670|ref|YP_003302040.1| ATPase AAA-2 domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268313628|gb|ACZ00003.1| ATPase AAA-2 domain protein [Thermomonospora curvata DSM 43183]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +A++ ++R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 509 ELHKRVIGQEDAIKALSQSIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 562

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 563 AEFLFGDEDALIQLDMSEFMEKHTVSR 589


>gi|218508572|ref|ZP_03506450.1| chaperone heat-shock protein [Rhizobium etli Brasil 5]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 155 ELAKSVIGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 208

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 209 ARFLFDDETAMVRMDMSEYMEKHSVAR 235


>gi|222632714|gb|EEE64846.1| hypothetical protein OsJ_19703 [Oryza sativa Japonica Group]
          Length = 855

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 536 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 595

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            I+     DEV             D+++G+ A     E  RK
Sbjct: 596 TII---FVDEV-------------DSMLGQRARCGEHEAMRK 621


>gi|71066053|ref|YP_264780.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           arcticus 273-4]
 gi|71039038|gb|AAZ19346.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           arcticus 273-4]
          Length = 849

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 20/102 (19%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + I+  LDR     + GQ +A   +A A++    R  L A   D+ +  + +  GPTGVG
Sbjct: 512 KSILQHLDRDLKHLVFGQDEAIGTLADAIK--LSRAGLKAP--DKPI-GSFMFAGPTGVG 566

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96
           KT +SR+LA L G   ++ +++++ E            GYVG
Sbjct: 567 KTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVG 608


>gi|52425838|ref|YP_088975.1| ClpA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307890|gb|AAU38390.1| ClpA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 856

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQGEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 619 ANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|321253386|ref|XP_003192719.1| ATP-dependent peptidase [Cryptococcus gattii WM276]
 gi|317459188|gb|ADV20932.1| ATP-dependent peptidase, putative [Cryptococcus gattii WM276]
          Length = 778

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  A  PF+    + F E+ +VG   ++ +R+L   A
Sbjct: 352 LPKGVLLTGPPGTGKTMLARAVAGEAEVPFLFASGSSFDEM-FVGVGAKR-VRELFAAA 408


>gi|298384943|ref|ZP_06994502.1| cell division protein FtsH [Bacteroides sp. 1_1_14]
 gi|298262087|gb|EFI04952.1| cell division protein FtsH [Bacteroides sp. 1_1_14]
          Length = 708

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 221 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 277


>gi|293188976|ref|ZP_06607709.1| ATP-dependent chaperone protein ClpB [Actinomyces odontolyticus
           F0309]
 gi|292822078|gb|EFF81004.1| ATP-dependent chaperone protein ClpB [Actinomyces odontolyticus
           F0309]
          Length = 866

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ L
Sbjct: 571 ELGKRLIGQKEAVRAVSDAVR-RSR-----AGLSDPNRPTGSFLFLGPTGVGKTELAKAL 624

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 625 AEFLFDDERAMVRIDMSEYSEKHSVARLV 653


>gi|257454689|ref|ZP_05619945.1| cell division protein FtsH [Enhydrobacter aerosaccus SK60]
 gi|257447999|gb|EEV22986.1| cell division protein FtsH [Enhydrobacter aerosaccus SK60]
          Length = 640

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 196 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 252


>gi|303280281|ref|XP_003059433.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459269|gb|EEH56565.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LL GP G GKT ++  +AR AG PF  +  T+   +  V    E  IR L
Sbjct: 47  PRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAATEI--VAGVSGESEAKIRQL 98


>gi|197284295|ref|YP_002150167.1| protein disaggregation chaperone [Proteus mirabilis HI4320]
 gi|227357800|ref|ZP_03842148.1| chaperone ClpB [Proteus mirabilis ATCC 29906]
 gi|194681782|emb|CAR41000.1| chaperone ClpB (heat-shock protein F84.1) [Proteus mirabilis
           HI4320]
 gi|227161910|gb|EEI46928.1| chaperone ClpB [Proteus mirabilis ATCC 29906]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL R +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHRRVIGQDEAVNAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LADFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|167565768|ref|ZP_02358684.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis EO147]
          Length = 663

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|73663540|ref|YP_302321.1| stress response-related Clp ATPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|122063325|sp|Q49V34|CLPC_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|72496055|dbj|BAE19376.1| putative stress response-related Clp ATPase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 820

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHNRVIGQKDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGR 97
             + G     I+V++++F E   V R
Sbjct: 560 ESMFGEDDAMIRVDMSEFMEKHAVSR 585


>gi|50085895|ref|YP_047405.1| cell division protein [Acinetobacter sp. ADP1]
 gi|49531871|emb|CAG69583.1| cell division protein [Acinetobacter sp. ADP1]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|127513762|ref|YP_001094959.1| ATP-dependent metalloprotease FtsH [Shewanella loihica PV-4]
 gi|126639057|gb|ABO24700.1| membrane protease FtsH catalytic subunit [Shewanella loihica PV-4]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|323492036|ref|ZP_08097201.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
 gi|323313765|gb|EGA66864.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
          Length = 654

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|312974022|ref|ZP_07788193.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 1827-70]
 gi|310331556|gb|EFP98812.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 1827-70]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|290958398|ref|YP_003489580.1| Clp family ATP-binding protease [Streptomyces scabiei 87.22]
 gi|260647924|emb|CBG71029.1| putative Clp-family ATP-binding protease [Streptomyces scabiei
           87.22]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + +IGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GP+GVGKT +S+ LA          I +++++F+E   V R
Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589


>gi|258647438|ref|ZP_05734907.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
 gi|260852704|gb|EEX72573.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK  V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 189 VAGQESAKEEVQEIVEFLKNPSKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 243

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 244 AHVPFFSLSGSDFVEM-FVGVGASR-VRDL 271


>gi|237719262|ref|ZP_04549743.1| AAA-metalloprotease FtsH [Bacteroides sp. 2_2_4]
 gi|229451641|gb|EEO57432.1| AAA-metalloprotease FtsH [Bacteroides sp. 2_2_4]
          Length = 716

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|224125622|ref|XP_002329677.1| predicted protein [Populus trichocarpa]
 gi|222870585|gb|EEF07716.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 516 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 573


>gi|221066110|ref|ZP_03542215.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
 gi|220711133|gb|EED66501.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
          Length = 640

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|50308497|ref|XP_454250.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643385|emb|CAG99337.1| KLLA0E06711p [Kluyveromyces lactis]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++I
Sbjct: 335 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKRI 384


>gi|29349415|ref|NP_812918.1| metalloprotease FtsH [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341324|gb|AAO79112.1| AAA-metalloprotease FtsH, with ATPase domain [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 209 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 265


>gi|326692380|ref|ZP_08229385.1| membrane ATPase FtsH [Leuconostoc argentinum KCTC 3773]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|303238152|ref|ZP_07324688.1| ATPase AAA-2 domain protein [Acetivibrio cellulolyticus CD2]
 gi|302594198|gb|EFL63910.1| ATPase AAA-2 domain protein [Acetivibrio cellulolyticus CD2]
          Length = 778

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 8/60 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L + ++GQ+ A  +V+ A+R NR       AD + +  P + + VGPTGVGKT + R LA
Sbjct: 487 LHKRVVGQKQAVISVSKAIRRNR-------ADFKKKKRPTSFIFVGPTGVGKTELVRALA 539


>gi|225010890|ref|ZP_03701357.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
 gi|225004937|gb|EEG42892.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 226 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 282


>gi|219129252|ref|XP_002184808.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403917|gb|EEC43867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  +L A +     PK  LL GP G GKT +++ +A  +G PF  +  + F E+ 
Sbjct: 188 LQNSERFTKLGAKI-----PKGALLCGPPGTGKTLLAKAVAGESGVPFYSISGSDFIEM- 241

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 242 FVGVGPSR-VRDL 253


>gi|209519546|ref|ZP_03268339.1| ATP-dependent chaperone ClpB [Burkholderia sp. H160]
 gi|209500025|gb|EEA00088.1| ATP-dependent chaperone ClpB [Burkholderia sp. H160]
          Length = 865

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I S+L   ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIESKLHERVVGQDEAINAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     +    I++++++F E   V R
Sbjct: 621 CKALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|163750160|ref|ZP_02157403.1| clpB protein [Shewanella benthica KT99]
 gi|161330217|gb|EDQ01199.1| clpB protein [Shewanella benthica KT99]
          Length = 857

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHESVIGQNEAVDAVSNAIR-RSR-----AGLADPERPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +      A  +++++++F E   V R
Sbjct: 620 KFLFDTEAAMVRIDMSEFMEKHSVAR 645


>gi|152979666|ref|YP_001345295.1| ATPase [Actinobacillus succinogenes 130Z]
 gi|150841389|gb|ABR75360.1| ATPase AAA-2 domain protein [Actinobacillus succinogenes 130Z]
          Length = 856

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVVGQSEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 619 ANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|126733006|ref|ZP_01748765.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
           stellata E-37]
 gi|126706535|gb|EBA05613.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
           stellata E-37]
          Length = 870

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ  A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 563 LHRRVVGQNQAVTAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 616

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 617 EFLFDDDSAMVRIDMSEFMEKHAVAR 642


>gi|153208629|ref|ZP_01946886.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212218621|ref|YP_002305408.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuK_Q154]
 gi|120575890|gb|EAX32514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212012883|gb|ACJ20263.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuK_Q154]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L R + GQ  A  ++  A++         A L +   P  + LL GPTGVGKT +
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIKLSR------AGLNNADKPVGSFLLAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA+  G   I+ +++++ E   V R
Sbjct: 509 TRQLAQALGIELIRFDMSEYMERHAVSR 536


>gi|308798703|ref|XP_003074131.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
 gi|116000303|emb|CAL49983.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
          Length = 826

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ SEL + +IGQ+ A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 487 QLESELHQRVIGQEAAVTSVAEAV------QRSRADLADPNGPVASFMFLGPTGVGKTEL 540

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA     +    ++++++++ E   V R
Sbjct: 541 AKALANYLFNSDTALVRLDMSEYMEKHSVAR 571


>gi|161830527|ref|YP_001597058.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 331]
 gi|161762394|gb|ABX78036.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 331]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L R + GQ  A  ++  A++         A L +   P  + LL GPTGVGKT +
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIKLSR------AGLNNADKPVGSFLLAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA+  G   I+ +++++ E   V R
Sbjct: 509 TRQLAQALGIELIRFDMSEYMERHAVSR 536


>gi|115465705|ref|NP_001056452.1| Os05g0584600 [Oryza sativa Japonica Group]
 gi|48843801|gb|AAT47060.1| unknown protein [Oryza sativa Japonica Group]
 gi|113580003|dbj|BAF18366.1| Os05g0584600 [Oryza sativa Japonica Group]
          Length = 855

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 536 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 595

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            I+     DEV             D+++G+ A     E  RK
Sbjct: 596 TII---FVDEV-------------DSMLGQRARCGEHEAMRK 621


>gi|53716929|ref|YP_105706.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei ATCC 23344]
 gi|124383118|ref|YP_001024213.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10229]
 gi|126447417|ref|YP_001078380.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10247]
 gi|254200513|ref|ZP_04906878.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|254204538|ref|ZP_04910891.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|254356833|ref|ZP_04973108.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
 gi|52422899|gb|AAU46469.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 23344]
 gi|124291138|gb|ABN00408.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10229]
 gi|126240271|gb|ABO03383.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10247]
 gi|147748125|gb|EDK55200.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|147754124|gb|EDK61188.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|148025860|gb|EDK83983.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|16078434|ref|NP_389253.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309234|ref|ZP_03591081.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313562|ref|ZP_03595367.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318484|ref|ZP_03599778.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322757|ref|ZP_03604051.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|81341923|sp|O31673|CLPE_BACSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpE;
           AltName: Full=ATPase ClpE; AltName: Full=Heat shock
           protein HSP1
 gi|2633741|emb|CAB13243.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L   +IGQ+ A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 401 KELEAKLHERVIGQEAAVQKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 454

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+ LA  L G     I+++++++ E            GYVG 
Sbjct: 455 LSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGH 497


>gi|326563842|gb|EGE14093.1| cell division protease FtsH [Moraxella catarrhalis 46P47B1]
 gi|326576768|gb|EGE26675.1| cell division protease FtsH [Moraxella catarrhalis 101P30B1]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 191 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 247


>gi|302306576|ref|NP_982982.2| ABR036Wp [Ashbya gossypii ATCC 10895]
 gi|299788582|gb|AAS50806.2| ABR036Wp [Ashbya gossypii ATCC 10895]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT I++ LAR +GA F+ + ++   +  Y
Sbjct: 125 PTGVLLYGPPGCGKTMIAKALARESGANFLSIRMSSIMDKWY 166


>gi|290889688|ref|ZP_06552777.1| hypothetical protein AWRIB429_0167 [Oenococcus oeni AWRIB429]
 gi|290480685|gb|EFD89320.1| hypothetical protein AWRIB429_0167 [Oenococcus oeni AWRIB429]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPKGVLLEGPPGTGKTLLAKAVAGEAKTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|255655991|ref|ZP_05401400.1| chaperone [Clostridium difficile QCD-23m63]
 gi|296450582|ref|ZP_06892335.1| chaperone protein ClpB [Clostridium difficile NAP08]
 gi|296879299|ref|ZP_06903294.1| chaperone protein ClpB [Clostridium difficile NAP07]
 gi|296260426|gb|EFH07268.1| chaperone protein ClpB [Clostridium difficile NAP08]
 gi|296429842|gb|EFH15694.1| chaperone protein ClpB [Clostridium difficile NAP07]
          Length = 864

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELHKRVIGQDEAVTAVSNAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LAR 75
           LAR
Sbjct: 625 LAR 627


>gi|167898139|ref|ZP_02485541.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|160886813|ref|ZP_02067816.1| hypothetical protein BACOVA_04826 [Bacteroides ovatus ATCC 8483]
 gi|156107224|gb|EDO08969.1| hypothetical protein BACOVA_04826 [Bacteroides ovatus ATCC 8483]
          Length = 718

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 231 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 287


>gi|154850675|gb|ABS88529.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850677|gb|ABS88530.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850679|gb|ABS88531.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850681|gb|ABS88532.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850683|gb|ABS88533.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850685|gb|ABS88534.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850687|gb|ABS88535.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850689|gb|ABS88536.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850691|gb|ABS88537.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850693|gb|ABS88538.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850695|gb|ABS88539.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850697|gb|ABS88540.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850699|gb|ABS88541.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850701|gb|ABS88542.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850703|gb|ABS88543.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850705|gb|ABS88544.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850707|gb|ABS88545.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850709|gb|ABS88546.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850711|gb|ABS88547.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850713|gb|ABS88548.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850715|gb|ABS88549.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850717|gb|ABS88550.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850719|gb|ABS88551.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850721|gb|ABS88552.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850723|gb|ABS88553.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850725|gb|ABS88554.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850727|gb|ABS88555.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850729|gb|ABS88556.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850731|gb|ABS88557.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850733|gb|ABS88558.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850735|gb|ABS88559.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850737|gb|ABS88560.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850739|gb|ABS88561.1| no mitochondrial derivative-like protein [Drosophila americana]
 gi|154850741|gb|ABS88562.1| no mitochondrial derivative-like protein [Drosophila americana]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
          ++ LD  I   QD + +V + +R+R     L  + +    P+ +LL GP G GKT I++ 
Sbjct: 13 IAGLDSVI---QDLRESVVLPVRHR----DLFKESKLWQAPRGVLLHGPPGCGKTLIAKA 65

Query: 73 LARLAGAPFIKVEVTKFTEIGY 94
           A+ AG  FI ++V   T+  Y
Sbjct: 66 TAKEAGMRFINLDVAILTDKWY 87


>gi|56753333|gb|AAW24870.1| SJCHGC05831 protein [Schistosoma japonicum]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I++E+   ++    AKR ++I       R   P        PK +LL GP G GKT ++R
Sbjct: 188 IINEIKHCVLEPLQAKRLLSIN-----SRLLQP--------PKGVLLYGPPGCGKTLLAR 234

Query: 72  RLARLAGAPFIKVEVTKFTEIGY 94
            +A  A   FI ++++    + Y
Sbjct: 235 AMAYAANVNFINLQISTLVNMWY 257


>gi|85712946|ref|ZP_01043986.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
 gi|85693252|gb|EAQ31210.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VGP G GKT +++ ++  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPKGVLMVGPPGTGKTLLAKAISGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|302768875|ref|XP_002967857.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
 gi|300164595|gb|EFJ31204.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
          Length = 828

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  A  PF+ +  + F E+ 
Sbjct: 356 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGEASVPFLSISGSDFMEM- 409

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 410 FVGVGPSR-VRDLFAQA 425


>gi|264679343|ref|YP_003279250.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|299532302|ref|ZP_07045695.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
 gi|262209856|gb|ACY33954.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|298719710|gb|EFI60674.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
          Length = 640

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|254796786|ref|YP_003081623.1| metalloprotease [Neorickettsia risticii str. Illinois]
 gi|310946750|sp|C6V4R9|FTSH_NEORI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|254589968|gb|ACT69330.1| metalloprotease [Neorickettsia risticii str. Illinois]
          Length = 636

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 189 IPKGCLLIGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFE 243


>gi|229512899|ref|ZP_04402366.1| cell division protein FtsH [Vibrio cholerae TMA 21]
 gi|229350148|gb|EEO15101.1| cell division protein FtsH [Vibrio cholerae TMA 21]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|229520928|ref|ZP_04410350.1| cell division protein FtsH [Vibrio cholerae TM 11079-80]
 gi|229342161|gb|EEO07157.1| cell division protein FtsH [Vibrio cholerae TM 11079-80]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|255690423|ref|ZP_05414098.1| ATP-dependent metalloprotease FtsH [Bacteroides finegoldii DSM
           17565]
 gi|260624042|gb|EEX46913.1| ATP-dependent metalloprotease FtsH [Bacteroides finegoldii DSM
           17565]
          Length = 710

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 230 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 286


>gi|221117544|ref|XP_002159061.1| PREDICTED: similar to N-ethylmaleimide-sensitive factor [Hydra
           magnipapillata]
          Length = 768

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLA-RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P ++LL GP G GKTA++  LA +L+  PF+KV V+    IGY   +  Q I+ + D A
Sbjct: 540 PVSLLLQGPAGSGKTALAAHLAYKLSNFPFVKV-VSPENMIGYSESSKCQAIKKIFDDA 597


>gi|194246845|ref|YP_002004486.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|193807204|emb|CAP18647.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  IL  G  G GKT ++R +A+  G PF +V  + F++  Y+G +  +++R+L D A
Sbjct: 124 PLGILFYGVAGTGKTTLARSVAKETGLPFFEVPSSIFSQ-KYIG-DAPEMVRELFDNA 179


>gi|153827664|ref|ZP_01980331.1| cell division protein FtsH [Vibrio cholerae MZO-2]
 gi|254292203|ref|ZP_04962971.1| cell division protein FtsH [Vibrio cholerae AM-19226]
 gi|149737858|gb|EDM52763.1| cell division protein FtsH [Vibrio cholerae MZO-2]
 gi|150421884|gb|EDN13863.1| cell division protein FtsH [Vibrio cholerae AM-19226]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|153807421|ref|ZP_01960089.1| hypothetical protein BACCAC_01700 [Bacteroides caccae ATCC 43185]
 gi|149129783|gb|EDM20995.1| hypothetical protein BACCAC_01700 [Bacteroides caccae ATCC 43185]
          Length = 709

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|120437031|ref|YP_862717.1| cell division protease FtsH [Gramella forsetii KT0803]
 gi|117579181|emb|CAL67650.1| cell division protease FtsH [Gramella forsetii KT0803]
          Length = 686

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 285


>gi|15895100|ref|NP_348449.1| ATP-dependent Clp proteinase [Clostridium acetobutylicum ATCC 824]
 gi|15024799|gb|AAK79789.1|AE007691_7 ATP-dependent Clp proteinase [Clostridium acetobutylicum ATCC 824]
 gi|325509238|gb|ADZ20874.1| ATP-dependent Clp proteinase [Clostridium acetobutylicum EA 2018]
          Length = 750

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ  A  ++  +++      +  A   DE  P  + L VGPTGVGKT IS++LA    
Sbjct: 462 IFGQDKALESIVQSIK------RSSAGFNDENKPVASFLFVGPTGVGKTEISKQLAEALN 515

Query: 79  APFIKVEVTKFTEIGYVGR 97
              I+ +++++ E   V R
Sbjct: 516 IKLIRFDMSEYQEKHTVAR 534


>gi|29654499|ref|NP_820191.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 493]
 gi|154707649|ref|YP_001424640.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165919022|ref|ZP_02219108.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 334]
 gi|29541766|gb|AAO90705.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           RSA 493]
 gi|154356935|gb|ABS78397.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917277|gb|EDR35881.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 334]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L R + GQ  A  ++  A++         A L +   P  + LL GPTGVGKT +
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIKLSR------AGLNNADKPVGSFLLAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA+  G   I+ +++++ E   V R
Sbjct: 509 TRQLAQALGIELIRFDMSEYMERHAVSR 536


>gi|84997423|ref|XP_953433.1| endopeptidase (CLP homologue) ATP-binding chain [Theileria annulata
           strain Ankara]
 gi|65304429|emb|CAI76808.1| endopeptidase (CLP homologue) ATP-binding chain, putative
           [Theileria annulata]
          Length = 916

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L + +IGQ++A + V  A+R      +   ++++   P  + L  GP GVGK+ 
Sbjct: 581 RNMEEDLHKMVIGQEEAVKNVCKAIR------RAKTNIKNPNRPIGSFLFCGPPGVGKSE 634

Query: 69  ISRRLAR--LAGAPFIKVEVTKFTEIGYVGR 97
           ++R L +   A    I+++++++TE   + R
Sbjct: 635 VARALTKYLFAKENLIRIDMSEYTEPHSISR 665


>gi|167914858|ref|ZP_02501949.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 251


>gi|67640886|ref|ZP_00439678.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|251767920|ref|ZP_04820323.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
 gi|254174450|ref|ZP_04881112.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|160695496|gb|EDP85466.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|238521691|gb|EEP85141.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|243061367|gb|EES43553.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 195 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 251


>gi|94986174|ref|YP_605538.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556455|gb|ABF46369.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 621

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     P  +LLVGP G GKT +++ +A  A  P+  +  + F E+ 
Sbjct: 176 LRHPERYHQLGARI-----PHGVLLVGPPGSGKTLLAKAVAGEAKVPYFSISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 230 FVGVGAAR-VRDLFEQA 245


>gi|297580763|ref|ZP_06942689.1| cell division protein FtsH [Vibrio cholerae RC385]
 gi|297535179|gb|EFH74014.1| cell division protein FtsH [Vibrio cholerae RC385]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|212212414|ref|YP_002303350.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuG_Q212]
 gi|212010824|gb|ACJ18205.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuG_Q212]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L R + GQ  A  ++  A++         A L +   P  + LL GPTGVGKT +
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIKLSR------AGLNNADKPVGSFLLAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA+  G   I+ +++++ E   V R
Sbjct: 509 TRQLAQALGIELIRFDMSEYMERHAVSR 536


>gi|195110965|ref|XP_002000050.1| GI24873 [Drosophila mojavensis]
 gi|193916644|gb|EDW15511.1| GI24873 [Drosophila mojavensis]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 146 MQKQEIREAVELPLTHAHLYKQIGID-----PPRGVLLYGPPGCGKTMLAKAVANHTTAS 200

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI V  ++F +  Y+G    +++RDL  +A
Sbjct: 201 FIAVVGSEFVQ-KYLGEG-PRMVRDLFRLA 228


>gi|169632638|ref|YP_001706374.1| cell division protein [Acinetobacter baumannii SDF]
 gi|169151430|emb|CAP00165.1| cell division protein [Acinetobacter baumannii]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|167922700|ref|ZP_02509791.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|134283372|ref|ZP_01770072.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|134245121|gb|EBA45215.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|126699637|ref|YP_001088534.1| chaperone [Clostridium difficile 630]
 gi|255101151|ref|ZP_05330128.1| chaperone [Clostridium difficile QCD-63q42]
 gi|255307025|ref|ZP_05351196.1| chaperone [Clostridium difficile ATCC 43255]
 gi|115251074|emb|CAJ68905.1| Chaperone protein [Clostridium difficile]
          Length = 864

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELHKRVIGQDEAVTAVSNAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LAR 75
           LAR
Sbjct: 625 LAR 627


>gi|71281252|ref|YP_270571.1| ATP-dependent chaperone protein ClpB [Colwellia psychrerythraea
           34H]
 gi|71146992|gb|AAZ27465.1| ATP-dependent chaperone protein ClpB [Colwellia psychrerythraea
           34H]
          Length = 861

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  +V+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 566 LHQNVIGQHEAVTSVSNAIR-RSR-----AGLSDPNQPIGSFLFLGPTGVGKTELTKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    I+V++++F E   V R V
Sbjct: 620 EFLFDSQDALIRVDMSEFMEKHSVARLV 647


>gi|66828351|ref|XP_647530.1| hypothetical protein DDB_G0268066 [Dictyostelium discoideum AX4]
 gi|60475551|gb|EAL73486.1| hypothetical protein DDB_G0268066 [Dictyostelium discoideum AX4]
          Length = 864

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK IL+ GP G GKT +++ +A  A A FI + +++  + G +G + E+ + ++  +AIN
Sbjct: 631 PKGILMYGPPGTGKTMLAKCVAFEAKANFIPINISELIQ-GEIGES-EKTLSEIFRIAIN 688


>gi|326526797|dbj|BAK00787.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 854

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 537 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 596

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            I+     DEV             D+++G+ A     E  RK
Sbjct: 597 TII---FVDEV-------------DSMLGQRARCGEHEAMRK 622


>gi|300710170|ref|YP_003735984.1| AAA ATPase central domain protein [Halalkalicoccus jeotgali B3]
 gi|299123853|gb|ADJ14192.1| AAA ATPase central domain protein [Halalkalicoccus jeotgali B3]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +L VGP G GKT  SR LA     PF++V+++  T   +G   +NV+++ 
Sbjct: 212 LLFVGPPGTGKTTTSRALAHDLDLPFVEVKLSMITSQYLGETAKNVDKVF 261


>gi|294626636|ref|ZP_06705233.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599056|gb|EFF43196.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|255569271|ref|XP_002525603.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223535039|gb|EEF36721.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 373 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 424


>gi|169794970|ref|YP_001712763.1| cell division protein [Acinetobacter baumannii AYE]
 gi|239503387|ref|ZP_04662697.1| cell division protein [Acinetobacter baumannii AB900]
 gi|260549222|ref|ZP_05823442.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260556452|ref|ZP_05828670.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332855129|ref|ZP_08435712.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332868237|ref|ZP_08438079.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332876155|ref|ZP_08443937.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
 gi|169147897|emb|CAM85760.1| cell division protein [Acinetobacter baumannii AYE]
 gi|193078151|gb|ABO13094.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|260407628|gb|EEX01101.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260409711|gb|EEX03011.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332727632|gb|EGJ59051.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332733498|gb|EGJ64668.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332735653|gb|EGJ66698.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|297745943|emb|CBI15999.3| unnamed protein product [Vitis vinifera]
          Length = 552

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 107 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 158


>gi|15640657|ref|NP_230286.1| cell division protein FtsH [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147673292|ref|YP_001216131.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|227080818|ref|YP_002809369.1| cell division protein FtsH [Vibrio cholerae M66-2]
 gi|229505741|ref|ZP_04395251.1| cell division protein FtsH [Vibrio cholerae BX 330286]
 gi|229509226|ref|ZP_04398711.1| cell division protein FtsH [Vibrio cholerae B33]
 gi|229519565|ref|ZP_04409008.1| cell division protein FtsH [Vibrio cholerae RC9]
 gi|229608852|ref|YP_002879500.1| cell division protein FtsH [Vibrio cholerae MJ-1236]
 gi|254850871|ref|ZP_05240221.1| cell division protein FtsH [Vibrio cholerae MO10]
 gi|9655072|gb|AAF93803.1| cell division protein FtsH [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|146315175|gb|ABQ19714.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|227008706|gb|ACP04918.1| cell division protein FtsH [Vibrio cholerae M66-2]
 gi|227012462|gb|ACP08672.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|229344254|gb|EEO09229.1| cell division protein FtsH [Vibrio cholerae RC9]
 gi|229353798|gb|EEO18734.1| cell division protein FtsH [Vibrio cholerae B33]
 gi|229357964|gb|EEO22881.1| cell division protein FtsH [Vibrio cholerae BX 330286]
 gi|229371507|gb|ACQ61930.1| cell division protein FtsH [Vibrio cholerae MJ-1236]
 gi|254846576|gb|EET24990.1| cell division protein FtsH [Vibrio cholerae MO10]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|325179545|emb|CCA13943.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 870

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N+ R  +L A +     PK  LLVGP G GKT +++  A  A  PF  +  + F E+ 
Sbjct: 371 LKNQTRFTKLGAKI-----PKGALLVGPPGTGKTLLAKATAGEASVPFYSISGSDFIEM- 424

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 425 FVGVGPSR-VRDL 436


>gi|307824853|ref|ZP_07655076.1| ATP-dependent chaperone ClpB [Methylobacter tundripaludum SV96]
 gi|307734211|gb|EFO05065.1| ATP-dependent chaperone ClpB [Methylobacter tundripaludum SV96]
          Length = 858

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           +L + +IGQ++A +AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 QLGKRVIGQEEALKAVSNAIR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKAL 618

Query: 74  AR-LAGAP--FIKVEVTKFTEIGYVGR 97
           A  +   P   +++++++F E   V R
Sbjct: 619 AEFMFDTPDAMVRIDMSEFMEKHSVAR 645


>gi|297181313|gb|ADI17504.1| hypothetical protein [uncultured bacterium HF0130_06E03]
          Length = 821

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L   I+GQ+ A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++R
Sbjct: 503 SKLKERIVGQEQAIAAVSRAIR-RTR-----AGLQDPRQPIGSFIFLGPTGVGKTELAKR 556

Query: 73  LARL 76
           LA  
Sbjct: 557 LAEF 560


>gi|291530835|emb|CBK96420.1| ATPases with chaperone activity, ATP-binding subunit [Eubacterium
           siraeum 70/3]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   ++GQ +A   VA A++    R QL A  R    P + + VGPTGVGKT + + LA 
Sbjct: 467 LKSKVVGQDEACELVAAAIKRT--RVQLSARRR----PASFIFVGPTGVGKTELVKVLAN 520

Query: 76  L---AGAPFIKVEVTKFTEIGYVGR 97
                  P I++++++F E   V R
Sbjct: 521 ELFNTVDPLIRLDMSEFMEKHSVSR 545


>gi|262376625|ref|ZP_06069853.1| cell division protein [Acinetobacter lwoffii SH145]
 gi|262308335|gb|EEY89470.1| cell division protein [Acinetobacter lwoffii SH145]
          Length = 629

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|262278062|ref|ZP_06055847.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258413|gb|EEY77146.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|126697428|gb|ABO26671.1| 26S protease regulatory subunit 6B [Haliotis discus discus]
          Length = 285

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 172 VQKQEVREAVELPLTHFEPYKQIGID-----PPRGVLMFGPPGCGKTMLAKAVAHHTTAA 226

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 227 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|195385659|ref|XP_002051522.1| GJ11764 [Drosophila virilis]
 gi|194147979|gb|EDW63677.1| GJ11764 [Drosophila virilis]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++ +A+ A   FI ++V   T+  Y
Sbjct: 130 PKGVLLYGPPGCGKTLIAKAMAKEACMRFINLDVAVLTDKWY 171


>gi|149504475|ref|XP_001518401.1| PREDICTED: similar to proteasomal ATPase (Tat-binding protein7)
           [Ornithorhynchus anatinus]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M LT +  P  + +++    I +Q+ + AV + L +    +Q+  D      P+ +L+ G
Sbjct: 254 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 308

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 309 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 356


>gi|53722142|ref|YP_111127.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126458626|ref|YP_001075521.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|167723562|ref|ZP_02406798.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei DM98]
 gi|167819698|ref|ZP_02451378.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei 91]
 gi|167849539|ref|ZP_02475047.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei B7210]
 gi|217418885|ref|ZP_03450392.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237508806|ref|ZP_04521521.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242311752|ref|ZP_04810769.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254190192|ref|ZP_04896701.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193314|ref|ZP_04899748.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254262317|ref|ZP_04953182.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254300451|ref|ZP_04967897.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|310943147|sp|Q3JMH0|FTSH_BURP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|52212556|emb|CAH38582.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126232394|gb|ABN95807.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|157810094|gb|EDO87264.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157937869|gb|EDO93539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650067|gb|EDS82760.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|217398189|gb|EEC38204.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|235001011|gb|EEP50435.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242134991|gb|EES21394.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254213319|gb|EET02704.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|50311345|ref|XP_455697.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644833|emb|CAG98405.1| KLLA0F13706p [Kluyveromyces lactis]
          Length = 842

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 369 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 425


>gi|83717168|ref|YP_439494.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|167616072|ref|ZP_02384707.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis Bt4]
 gi|257142620|ref|ZP_05590882.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|83650993|gb|ABC35057.1| ATP-dependent metalloprotease, FtsH family [Burkholderia
           thailandensis E264]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|322802278|gb|EFZ22674.1| hypothetical protein SINV_06415 [Solenopsis invicta]
          Length = 748

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 274 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFSMA 330


>gi|319793959|ref|YP_004155599.1| ATP-dependent metalloprotease ftsh [Variovorax paradoxus EPS]
 gi|315596422|gb|ADU37488.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus EPS]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|226951532|ref|ZP_03821996.1| ATP-dependent metalloprotease FtsH [Acinetobacter sp. ATCC 27244]
 gi|294651174|ref|ZP_06728506.1| M41 family endopeptidase FtsH [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837724|gb|EEH70107.1| ATP-dependent metalloprotease FtsH [Acinetobacter sp. ATCC 27244]
 gi|292822927|gb|EFF81798.1| M41 family endopeptidase FtsH [Acinetobacter haemolyticus ATCC
           19194]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|167577949|ref|ZP_02370823.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|145589196|ref|YP_001155793.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047602|gb|ABP34229.1| membrane protease FtsH catalytic subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 621

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 182 IPHGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFENA 238


>gi|77414072|ref|ZP_00790241.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 515]
 gi|77159870|gb|EAO71012.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 515]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 274 KELGNRLKGKVIGQNDAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 326

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 327 ELAKQLA 333


>gi|325179904|emb|CCA14306.1| fidgetinlike protein putative [Albugo laibachii Nc14]
          Length = 578

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT I + +A  + A F  +  +  T   + G   E+++R L  VA
Sbjct: 315 LPKGLLLFGPPGTGKTLIGKAMANQSNATFFSISASSLTS-KWTGEG-EKLVRTLFAVA 371


>gi|295702321|ref|YP_003595396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium DSM 319]
 gi|294799980|gb|ADF37046.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium DSM 319]
          Length = 813

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 507 LHSRVIGQEEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 560


>gi|297745747|emb|CBI15803.3| unnamed protein product [Vitis vinifera]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 82  IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVANHTTAA 136

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 137 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 164


>gi|229525290|ref|ZP_04414695.1| cell division protein FtsH [Vibrio cholerae bv. albensis VL426]
 gi|229338871|gb|EEO03888.1| cell division protein FtsH [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|229530442|ref|ZP_04419830.1| cell division protein FtsH [Vibrio cholerae 12129(1)]
 gi|229332215|gb|EEN97703.1| cell division protein FtsH [Vibrio cholerae 12129(1)]
 gi|327483439|gb|AEA77846.1| Cell division protein FtsH [Vibrio cholerae LMA3894-4]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|197294483|ref|YP_001799024.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
 gi|171853810|emb|CAM11751.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma
           australiense]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107
           D++ PK  LL  P G GKT + + L+    A FI+ E +K  +  YVG  VE+  +  + 
Sbjct: 310 DKIRPKGYLLYEPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368

Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140
               D  I  + E     +R D+   + SIN    IL  L G
Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410


>gi|159902766|ref|YP_001550110.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. MIT 9211]
 gi|159887942|gb|ABX08156.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit
           ClpB [Prochlorococcus marinus str. MIT 9211]
          Length = 920

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L   +IGQ +A +AVA A++ R R     A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 613 TDLGNKVIGQSEAVKAVAEAIK-RAR-----AGMKDSYRPIGSFLFLGPTGVGKTELAKA 666

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          I++++++F E   V R
Sbjct: 667 LAASLFDEEEALIRLDMSEFMERNAVAR 694


>gi|77409795|ref|ZP_00786444.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
          agalactiae COH1]
 gi|77171594|gb|EAO74814.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
          agalactiae COH1]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10 REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
          +E+ + L   +IGQ DA  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 10 KELGNRLKGKVIGQNDAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 62

Query: 68 AISRRLA 74
           ++++LA
Sbjct: 63 ELAKQLA 69


>gi|307579092|gb|ADN63061.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 195 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 251


>gi|299769011|ref|YP_003731037.1| cell division protein [Acinetobacter sp. DR1]
 gi|298699099|gb|ADI89664.1| cell division protein [Acinetobacter sp. DR1]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 200 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 256


>gi|294496954|ref|YP_003560654.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium QM B1551]
 gi|294346891|gb|ADE67220.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium QM B1551]
          Length = 812

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|293609977|ref|ZP_06692279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828429|gb|EFF86792.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|166712462|ref|ZP_02243669.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|15836698|ref|NP_297386.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|9104871|gb|AAF82906.1|AE003863_8 cell division protein [Xylella fastidiosa 9a5c]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|21242481|ref|NP_642063.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|294665639|ref|ZP_06730916.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21107929|gb|AAM36599.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292604585|gb|EFF47959.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|78047321|ref|YP_363496.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325928792|ref|ZP_08189961.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
 gi|78035751|emb|CAJ23442.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325540873|gb|EGD12446.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|88812981|ref|ZP_01128224.1| cell division protein FtsH [Nitrococcus mobilis Nb-231]
 gi|88789759|gb|EAR20883.1| cell division protein FtsH [Nitrococcus mobilis Nb-231]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+
Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAIAGEARVPFFTISGSDFVEM-FVGVGAAR-VRDM 238


>gi|71275933|ref|ZP_00652216.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71900019|ref|ZP_00682164.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|170729313|ref|YP_001774746.1| cell division protein [Xylella fastidiosa M12]
 gi|71163310|gb|EAO13029.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71730229|gb|EAO32315.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|167964106|gb|ACA11116.1| cell division protein [Xylella fastidiosa M12]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|194334959|ref|YP_002016819.1| ATPase AAA-2 domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312777|gb|ACF47172.1| ATPase AAA-2 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL   +IGQ +A RAV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEAELHERVIGQDNAVRAVSEAVK-RSR-----AGMGDEKKPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDEDAMIRIDMSEYMESHTVSRLV 220


>gi|330817015|ref|YP_004360720.1| ATP-dependent Zn protease [Burkholderia gladioli BSR3]
 gi|327369408|gb|AEA60764.1| ATP-dependent Zn protease [Burkholderia gladioli BSR3]
          Length = 625

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 10/78 (12%)

Query: 41  QQLPADLRDEL--------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           QQ+ A LRD          +PK +L+VG  G GKT ++R +A  A  PF  +  + F E+
Sbjct: 181 QQIVAFLRDPQRYQRLGGKIPKGVLIVGAPGTGKTLLARAVAGEADVPFFTISGSAFVEM 240

Query: 93  GYVGRNVEQIIRDLVDVA 110
            +VG    + +RDL + A
Sbjct: 241 -FVGVGAAR-VRDLFEQA 256


>gi|262371958|ref|ZP_06065237.1| cell division protein [Acinetobacter junii SH205]
 gi|262311983|gb|EEY93068.1| cell division protein [Acinetobacter junii SH205]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|260771820|ref|ZP_05880738.1| cell division protein FtsH [Vibrio metschnikovii CIP 69.14]
 gi|260613112|gb|EEX38313.1| cell division protein FtsH [Vibrio metschnikovii CIP 69.14]
          Length = 522

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 52  LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 105

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 106 FVGVGASR-VRDMFEQA 121


>gi|221113665|ref|XP_002158042.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 395

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 149 IQKQEMREAVELPLTHFQLYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 203

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 204 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 231


>gi|167906504|ref|ZP_02493709.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|167742526|ref|ZP_02415300.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|126442831|ref|YP_001062570.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|167828076|ref|ZP_02459547.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226198325|ref|ZP_03793895.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|126222322|gb|ABN85827.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|225929609|gb|EEH25626.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|145588634|ref|YP_001155231.1| ATPase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047040|gb|ABP33667.1| ATPase AAA-2 domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 867

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A RAV+ A+R R R     A L +E  P  + L +GPTGVGKT + + LA
Sbjct: 573 LHKRVVGQEEAIRAVSDAIR-RSR-----AGLAEENRPYGSFLFLGPTGVGKTELCKALA 626

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 627 GFLFDSEDHLIRIDMSEFMEKHSVAR 652


>gi|58584410|ref|YP_197983.1| ATP-dependent Zn protease, HflB [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418726|gb|AAW70741.1| ATP-dependent Zn protease, HflB [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+ R + Q L   +     PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 173 LKQRQKFQVLGGKI-----PKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ D
Sbjct: 227 FVGVGASR-VRDMFD 240


>gi|148261529|ref|YP_001235656.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidiphilium
           cryptum JF-5]
 gi|326405017|ref|YP_004285099.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidiphilium
           multivorum AIU301]
 gi|146403210|gb|ABQ31737.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidiphilium
           cryptum JF-5]
 gi|325051879|dbj|BAJ82217.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidiphilium
           multivorum AIU301]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           R +  +L   + GQ  A  A++ A++         A LRD   P    L  GPTGVGKT 
Sbjct: 456 RTLERDLKSMVFGQDSAIEALSAAIKLAR------AGLRDAEKPIGCYLFSGPTGVGKTE 509

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++R+LA   G    + +++++ E            GYVG +   ++ D VD   + V
Sbjct: 510 VARQLASTLGIELTRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDSVDQHPHCV 566


>gi|325916041|ref|ZP_08178331.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537717|gb|EGD09423.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|298500753|ref|ZP_07010556.1| cell division protein FtsH [Vibrio cholerae MAK 757]
 gi|297540534|gb|EFH76592.1| cell division protein FtsH [Vibrio cholerae MAK 757]
          Length = 550

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 74  LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 127

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 128 FVGVGASR-VRDMFEQA 143


>gi|225464690|ref|XP_002275604.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  I
Sbjct: 510 RGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKI 567


>gi|121534286|ref|ZP_01666110.1| AAA family ATPase, CDC48 subfamily [Thermosinus carboxydivorans
           Nor1]
 gi|121307056|gb|EAX47974.1| AAA family ATPase, CDC48 subfamily [Thermosinus carboxydivorans
           Nor1]
          Length = 720

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           MPK +LL GP G GKT I R LA   GA  I V+ +      +G   + + QI +    V
Sbjct: 488 MPKGVLLTGPPGTGKTLIVRALAGSTGAHLIAVDASTLHSRWLGEAEKGLRQIFKRAKQV 547

Query: 110 AINIV 114
           A  I+
Sbjct: 548 APCIL 552


>gi|121597791|ref|YP_989640.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei SAVP1]
 gi|121225589|gb|ABM49120.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           SAVP1]
          Length = 852

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 388 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 444


>gi|160900357|ref|YP_001565939.1| ATP-dependent metalloprotease FtsH [Delftia acidovorans SPH-1]
 gi|160365941|gb|ABX37554.1| ATP-dependent metalloprotease FtsH [Delftia acidovorans SPH-1]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|58582572|ref|YP_201588.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427166|gb|AAW76203.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|77165886|ref|YP_344411.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
 gi|76884200|gb|ABA58881.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
          Length = 754

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R I GQ  A  A+  A++         + L D   P  + L  GPTGVGKT ++R+
Sbjct: 458 ANLKRVIFGQDKAIEALGAAIKMSR------SGLGDTDRPVGSFLFSGPTGVGKTEVTRQ 511

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA + G   I+ +++++ E   V R
Sbjct: 512 LAHILGIELIRFDMSEYMERHTVSR 536


>gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV
          Length = 780

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK ILL GP G GKT ++R LA   GA FI V     ++KF   G   + + +I ++  +
Sbjct: 246 PKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKF--YGESEQRIREIFKEAEE 303

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE  +   E+R+       +D + G+        +N  +    
Sbjct: 304 NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDP 363

Query: 154 KLRDGEISDKEIDIEVADT 172
            LR     D+EI+I   DT
Sbjct: 364 ALRRPGRFDREIEIRPPDT 382



 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PK ILL GP G GKT +++ +A  +GA FI V   +     +VG + E+ IR++
Sbjct: 521 PKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILS-KWVGES-EKAIREI 572


>gi|313678896|ref|YP_004056636.1| ATP-dependent metalloprotease FtsH [Mycoplasma bovis PG45]
 gi|312950740|gb|ADR25335.1| ATP-dependent metalloprotease FtsH [Mycoplasma bovis PG45]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  ILL GP G GKT +++  A  A  PF  +  + F E+ +VG   ++ +R +VD A
Sbjct: 232 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-FVGLGAKR-VRTVVDEA 288


>gi|308094710|ref|ZP_05891424.2| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
 gi|308089598|gb|EFO39293.1| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 193 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 247 FVGVGASR-VRDMFEQA 262


>gi|301631403|ref|XP_002944787.1| PREDICTED: cell division protease ftsH-like [Xenopus (Silurana)
           tropicalis]
          Length = 625

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 179 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 235


>gi|317052480|ref|YP_004113596.1| ATP-dependent metalloprotease FtsH [Desulfurispirillum indicum S5]
 gi|316947564|gb|ADU67040.1| ATP-dependent metalloprotease FtsH [Desulfurispirillum indicum S5]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL+G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL +
Sbjct: 186 IPKGVLLMGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 240


>gi|290991819|ref|XP_002678532.1| predicted protein [Naegleria gruberi]
 gi|284092145|gb|EFC45788.1| predicted protein [Naegleria gruberi]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 150 IQKQEIREAVELPLTHFGLYEQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 204

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 205 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 232


>gi|241763938|ref|ZP_04761980.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
 gi|241366761|gb|EER61202.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|167629433|ref|YP_001679932.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
 gi|167592173|gb|ABZ83921.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
          Length = 814

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R L
Sbjct: 508 ELHRRVIGQDEAVAAVSRAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARAL 561

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A  L G     ++++++++ E   V R V
Sbjct: 562 AEALFGQEDAMVRIDMSEYMEKHSVSRLV 590


>gi|104780021|ref|YP_606519.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
 gi|95109008|emb|CAK13704.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|47207377|emb|CAF94890.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 468

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 209 PKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWY 250


>gi|325123185|gb|ADY82708.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 598

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 156 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 212


>gi|316968151|gb|EFV52477.1| 26S protease regulatory subunit 6B [Trichinella spiralis]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L F+  P    +++    + +Q+ + AV + L +    QQ+  D      P+ +LL GP 
Sbjct: 137 LRFDERPTITYNDIGGLDMQKQEVREAVELPLTHFELYQQIGID-----PPQGVLLYGPP 191

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           G GKT +++ +A    A FI+V  ++F +  Y+G     +I
Sbjct: 192 GCGKTMLAKAVASQTTAAFIRVVGSEFVQ-KYLGEGPRMVI 231


>gi|262393376|ref|YP_003285230.1| cell division protein FtsH [Vibrio sp. Ex25]
 gi|262336970|gb|ACY50765.1| cell division protein FtsH [Vibrio sp. Ex25]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|262172287|ref|ZP_06039965.1| cell division protein FtsH [Vibrio mimicus MB-451]
 gi|261893363|gb|EEY39349.1| cell division protein FtsH [Vibrio mimicus MB-451]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|260775430|ref|ZP_05884327.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608611|gb|EEX34776.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 650

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|221117546|ref|XP_002159117.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLA-RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           P ++LL GP G GKTA++  LA +L+  PF+KV V+    IGY   +  Q I+ + D
Sbjct: 50  PVSLLLQGPAGSGKTALAAHLAYKLSNFPFVKV-VSPENMIGYSESSKCQAIKKIFD 105


>gi|206603944|gb|EDZ40424.1| Peptidase M41, FtsH [Leptospirillum sp. Group II '5-way CG']
          Length = 592

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 178 IPKGVLVVGPPGTGKTLLAKAIAGEADVPFYHISGSDFVEM-FVGVGASR-VRDLFE 232


>gi|188575912|ref|YP_001912841.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520364|gb|ACD58309.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|163786153|ref|ZP_02180601.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
 gi|159878013|gb|EDP72069.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 284


>gi|145298037|ref|YP_001140878.1| cell division protease ftsH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850809|gb|ABO89130.1| Cell division protease ftsH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|255744146|ref|ZP_05418099.1| cell division protein FtsH [Vibrio cholera CIRS 101]
 gi|262169936|ref|ZP_06037626.1| cell division protein FtsH [Vibrio cholerae RC27]
 gi|255738086|gb|EET93478.1| cell division protein FtsH [Vibrio cholera CIRS 101]
 gi|262021670|gb|EEY40381.1| cell division protein FtsH [Vibrio cholerae RC27]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|78357142|ref|YP_388591.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
 gi|78219547|gb|ABB38896.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
          Length = 760

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +L   + GQQ A  +V  A LR+R       A L     P  + L  GPTGVGKT ++++
Sbjct: 454 DLHSVVFGQQAAVDSVTKAILRSR-------AGLSSPERPTGSFLFYGPTGVGKTELAKQ 506

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA   G  FI+ +++++ E   V R
Sbjct: 507 LAATLGVSFIRFDMSEYMEKHAVAR 531


>gi|21362820|sp|Q975U2|PAN_SULTO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
          Length = 392

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI+V  ++F +  +VG    +I+R++ ++A
Sbjct: 168 PKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQ-KFVGEGA-RIVREVFELA 223


>gi|21232500|ref|NP_638417.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767416|ref|YP_242178.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990519|ref|YP_001902529.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris
           str. B100]
 gi|54035864|sp|Q8P6A0|CLPB_XANCP RecName: Full=Chaperone protein ClpB
 gi|21114288|gb|AAM42341.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572748|gb|AAY48158.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732279|emb|CAP50471.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
          Length = 861

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R ++GQ++A + V+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHRRVVGQEEAIKVVSDAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F E   V R
Sbjct: 619 ADFLFDSTEAMIRIDMSEFMEKHSVSR 645


>gi|86140538|ref|ZP_01059097.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
 gi|85832480|gb|EAQ50929.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 232 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 288


>gi|58698417|ref|ZP_00373328.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630896|ref|YP_002727687.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia sp.
           wRi]
 gi|58535072|gb|EAL59160.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592877|gb|ACN95896.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia sp.
           wRi]
          Length = 768

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   I+ +++++ E   + R
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISR 552


>gi|332018901|gb|EGI59447.1| AFG3-like protein 2 [Acromyrmex echinatior]
          Length = 670

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 197 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFSMA 253


>gi|319891481|ref|YP_004148356.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161177|gb|ADV04720.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465348|gb|ADX77501.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           pseudintermedius ED99]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA  A++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQNDAVIAISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 EAMFGEEDAMIRVDMSEFMEKHAVSR 585


>gi|308190378|ref|YP_003923309.1| cell division protein [Mycoplasma fermentans JER]
 gi|307625120|gb|ADN69425.1| cell division protein [Mycoplasma fermentans JER]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MP  ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   +++
Sbjct: 241 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRV 290


>gi|269968319|ref|ZP_06182341.1| cell division protein FtsH [Vibrio alginolyticus 40B]
 gi|269827070|gb|EEZ81382.1| cell division protein FtsH [Vibrio alginolyticus 40B]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 193 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 247 FVGVGASR-VRDMFEQA 262


>gi|297568881|ref|YP_003690225.1| ATP-dependent metalloprotease FtsH [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924796|gb|ADH85606.1| ATP-dependent metalloprotease FtsH [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 663

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LL+G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLMGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237


>gi|238917604|ref|YP_002931121.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238872964|gb|ACR72674.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 243 LPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLAGSDFVEM-FVGVGASR-VRDL 295


>gi|228469478|ref|ZP_04054482.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
 gi|228308993|gb|EEK17645.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT  ++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 214 IPKGALLVGPPGTGKTLFAKAVAGEAHVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 270


>gi|218515409|ref|ZP_03512249.1| putative cell division protein [Rhizobium etli 8C-3]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           M + +LL GP G GKT  ++ +A+ AG P I   V+++   G++G
Sbjct: 229 MDRGVLLYGPPGTGKTLFAQAVAKSAGLPLITASVSQWQSRGHLG 273


>gi|153830956|ref|ZP_01983623.1| ATP-dependent metallopeptidase HflB [Vibrio cholerae 623-39]
 gi|148873569|gb|EDL71704.1| ATP-dependent metallopeptidase HflB [Vibrio cholerae 623-39]
          Length = 578

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|126663501|ref|ZP_01734498.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
 gi|126624449|gb|EAZ95140.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 221 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 277


>gi|17560432|ref|NP_504197.1| FIdGetin-Like (mammalian developmental AAA ATPase) related family
           member (figl-1) [Caenorhabditis elegans]
 gi|74956689|sp|O16299|FIGL1_CAEEL RecName: Full=Fidgetin-like protein 1; AltName: Full=Fidgetin
           homolog
 gi|2291232|gb|AAB65351.1| Hypothetical protein F32D1.1 [Caenorhabditis elegans]
          Length = 594

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   +VG   E+++R L  VA
Sbjct: 349 PKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTS-KWVGEG-EKLVRALFSVA 404


>gi|42521034|ref|NP_966949.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410775|gb|AAS14883.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 768

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   I+ +++++ E   + R
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISR 552


>gi|42521050|ref|NP_966965.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410791|gb|AAS14899.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|28899237|ref|NP_798842.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807461|dbj|BAC60726.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|328474228|gb|EGF45033.1| cell division protein FtsH [Vibrio parahaemolyticus 10329]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|28198007|ref|NP_778321.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71899229|ref|ZP_00681391.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182680633|ref|YP_001828793.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
 gi|28056067|gb|AAO27970.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71730962|gb|EAO33031.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182630743|gb|ACB91519.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|330447383|ref|ZP_08311032.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491574|dbj|GAA05529.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 124 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 177

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 178 FVGVGASR-VRDMFEQA 193


>gi|325276158|ref|ZP_08141963.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
 gi|324098695|gb|EGB96736.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|330916077|ref|XP_003297285.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1]
 gi|311330141|gb|EFQ94627.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1]
          Length = 784

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R  A  AG PF  +   +        +    +  D +D A+
Sbjct: 363 LPKGVLLVGPPGTGKTLLARACAGEAGVPFFYMSAAR-------SKAPAIVFIDELD-AV 414

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKT-----ATSNTREVFRKK-LRDGEISDKEI 165
              R+SR      Q ++N     LD     T     A +N  E+  +  LR G   D+ +
Sbjct: 415 GGKRKSRDANYHRQ-TLNQLLNDLDGFDQSTGVIFIAATNHPELLDQALLRPGRF-DRHV 472

Query: 166 DIEVADTSSDIS 177
            +E+ D +  ++
Sbjct: 473 QVELPDVTGRLA 484


>gi|259147695|emb|CAY80945.1| Rpt1p [Saccharomyces cerevisiae EC1118]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  T+  +  YVG    +++R+L ++A
Sbjct: 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGTELVQ-KYVGEGA-RMVRELFEMA 298


>gi|256073978|ref|XP_002573304.1| paraplegin (M41 family) [Schistosoma mansoni]
 gi|238658481|emb|CAZ29536.1| paraplegin (M41 family) [Schistosoma mansoni]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           L+N  + Q L A L     PK  LL+GP G GKT + + LA  A  PF  +   +F E+
Sbjct: 191 LKNPQKYQALGAKL-----PKGALLLGPPGTGKTLLVKALANEAEVPFFSMAGPQFVEV 244


>gi|222623348|gb|EEE57480.1| hypothetical protein OsJ_07728 [Oryza sativa Japonica Group]
          Length = 550

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 107 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 158


>gi|226508852|ref|NP_001145329.1| hypothetical protein LOC100278654 [Zea mays]
 gi|195654707|gb|ACG46821.1| hypothetical protein [Zea mays]
          Length = 485

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
          +PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ +VG
Sbjct: 20 IPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVG 63


>gi|167839738|ref|ZP_02466422.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 202 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 258


>gi|153840418|ref|ZP_01993085.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
 gi|149745920|gb|EDM57050.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|121591823|ref|ZP_01679007.1| cell division protease FtsH [Vibrio cholerae 2740-80]
 gi|121546312|gb|EAX56593.1| cell division protease FtsH [Vibrio cholerae 2740-80]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 86  LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 139

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 140 FVGVGASR-VRDMFEQA 155


>gi|26991401|ref|NP_746826.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida KT2440]
 gi|24986470|gb|AAN70290.1|AE016669_8 cell division protein FtsH [Pseudomonas putida KT2440]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|57239570|ref|YP_180706.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579558|ref|YP_197770.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617612|ref|YP_196811.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Gardel]
 gi|57161649|emb|CAH58578.1| cell division protein FtsH [Ehrlichia ruminantium str. Welgevonden]
 gi|58417224|emb|CAI28337.1| Cell division protein ftsh homolog [Ehrlichia ruminantium str.
           Gardel]
 gi|58418184|emb|CAI27388.1| Cell division protein ftsh homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L++R + Q+L   +     PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 175 LKHRQKFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVD 108
           +VG    + +RD+ +
Sbjct: 229 FVGVGASR-VRDMFE 242


>gi|330830895|ref|YP_004393847.1| ATP-dependent metallopeptidase HflB [Aeromonas veronii B565]
 gi|328806031|gb|AEB51230.1| ATP-dependent metallopeptidase HflB [Aeromonas veronii B565]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|325125165|gb|ADY84495.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|303242599|ref|ZP_07329075.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acetivibrio
           cellulolyticus CD2]
 gi|302589856|gb|EFL59628.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acetivibrio
           cellulolyticus CD2]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++  VGPTGVGKT + ++L+ + G P I+ +++++ E   V R
Sbjct: 496 SLFFVGPTGVGKTELCKQLSSILGIPLIRFDMSEYQEKHTVAR 538


>gi|289662670|ref|ZP_06484251.1| cell division protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669633|ref|ZP_06490708.1| cell division protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|289641314|ref|ZP_06473480.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289508912|gb|EFD29845.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P  +L+VGP G GKT ++R +A  A  PF+ V  + F E+ +VG    + +RDL
Sbjct: 222 PGGVLMVGPPGTGKTLLARAVAGEAEVPFLSVSGSGFVEM-FVGVGASR-VRDL 273


>gi|284162502|ref|YP_003401125.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284012499|gb|ADB58452.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
            +L +GP G GKT  +R L+R  G P ++V+++  T   +G   +N+E++
Sbjct: 203 KLLFIGPPGTGKTTTARALSRKLGLPLVEVKLSMITSQYLGETSKNIEKV 252


>gi|261250305|ref|ZP_05942881.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
 gi|260939421|gb|EEX95407.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|290343487|ref|YP_003494854.1| hypothetical protein OTV1_014 [Ostreococcus tauri virus 1]
 gi|260160902|emb|CAY39602.1| hypothetical protein OTV1_014 [Ostreococcus tauri virus 1]
          Length = 579

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL G  G GKT ++R +A  +  PFI+     F E+ +VG   ++ +RD+ +VA
Sbjct: 177 IPRGALLAGKPGTGKTLLARAIAGESNVPFIQCSAANFVEM-FVGVGAKR-VRDIFEVA 233


>gi|225434670|ref|XP_002279721.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 818

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 373 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 424


>gi|254433238|ref|ZP_05046746.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           oceani AFC27]
 gi|207089571|gb|EDZ66842.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           oceani AFC27]
          Length = 734

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R I GQ  A  A+  A++         + L D   P  + L  GPTGVGKT ++R+
Sbjct: 438 ANLKRVIFGQDKAIEALGAAIKMSR------SGLGDTDRPVGSFLFSGPTGVGKTEVTRQ 491

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA + G   I+ +++++ E   V R
Sbjct: 492 LAHILGIELIRFDMSEYMERHTVSR 516


>gi|195055733|ref|XP_001994767.1| GH14249 [Drosophila grimshawi]
 gi|193892530|gb|EDV91396.1| GH14249 [Drosophila grimshawi]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 148 KQEIREAVELPLTHAHLYKQIGID-----PPRGVLLYGPPGCGKTMLAKAVANQTTAAFI 202

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            V  ++F +  Y+G    +++RD+  +A
Sbjct: 203 HVVGSEFVQ-KYLGEG-PRMVRDIFRLA 228


>gi|148378007|ref|YP_001256883.1| cell division protein ftsH-like protein [Mycoplasma agalactiae PG2]
 gi|148292053|emb|CAL59445.1| Cell division protein ftsH homolog [Mycoplasma agalactiae PG2]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  ILL GP G GKT +++  A  A  PF  +  + F E+ +VG   ++ +R +VD A
Sbjct: 231 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-FVGLGAKR-VRTVVDEA 287


>gi|126642712|ref|YP_001085696.1| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|184159244|ref|YP_001847583.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213157619|ref|YP_002320417.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|215482521|ref|YP_002324709.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|301346064|ref|ZP_07226805.1| cell division protein [Acinetobacter baumannii AB056]
 gi|301511492|ref|ZP_07236729.1| cell division protein [Acinetobacter baumannii AB058]
 gi|301595415|ref|ZP_07240423.1| cell division protein [Acinetobacter baumannii AB059]
 gi|183210838|gb|ACC58236.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213056779|gb|ACJ41681.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|213988125|gb|ACJ58424.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|322509158|gb|ADX04612.1| ftsH [Acinetobacter baumannii 1656-2]
 gi|323519186|gb|ADX93567.1| cell division protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 598

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 156 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 212


>gi|170719900|ref|YP_001747588.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
 gi|169757903|gb|ACA71219.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|186475877|ref|YP_001857347.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192336|gb|ACC70301.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF  V    F E+ +VG    + +RDL + A
Sbjct: 214 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFHSVSGAGFVEM-FVGVGAAR-VRDLFEQA 270


>gi|104773532|ref|YP_618512.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422613|emb|CAI97218.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|89900796|ref|YP_523267.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118]
 gi|89345533|gb|ABD69736.1| membrane protease FtsH catalytic subunit [Rhodoferax ferrireducens
           T118]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKGIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFENA 249


>gi|21231166|ref|NP_637083.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768826|ref|YP_243588.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991941|ref|YP_001903951.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21112805|gb|AAM41007.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574158|gb|AAY49568.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733701|emb|CAP51906.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|84624458|ref|YP_451830.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368398|dbj|BAE69556.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 199 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 255


>gi|89072569|ref|ZP_01159141.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
 gi|89051673|gb|EAR57126.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|328768110|gb|EGF78157.1| hypothetical protein BATDEDRAFT_13267 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 611

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
          +P+ ILL GP G GKT ++R +A  AG PFI +
Sbjct: 52 LPRGILLHGPPGCGKTMLARAIAGEAGVPFISI 84


>gi|308459870|ref|XP_003092247.1| CRE-PPGN-1 protein [Caenorhabditis remanei]
 gi|308253975|gb|EFO97927.1| CRE-PPGN-1 protein [Caenorhabditis remanei]
          Length = 931

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92
           L+N  R  +L A L     P+  LL GP G GKT +++ LA  +  PFI +  ++F E I
Sbjct: 307 LKNPGRFTKLGAKL-----PRGALLTGPPGCGKTLLAKALAAESTVPFISMNGSEFVEVI 361

Query: 93  GYVG 96
           G +G
Sbjct: 362 GGLG 365


>gi|295793530|gb|ADG33065.1| hypothetical protein BalV_0477 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 698

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL D A
Sbjct: 250 IPRGVLLYGLPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 306


>gi|291483905|dbj|BAI84980.1| hypothetical protein BSNT_02301 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 597

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L   +IGQ+ A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 299 KELEAKLHERVIGQEAAVQKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 352

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+ LA  L G     I+++++++ E            GYVG 
Sbjct: 353 LSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGH 395


>gi|291320747|ref|YP_003516012.1| cell division protein FtsH [Mycoplasma agalactiae]
 gi|290753083|emb|CBH41059.1| Cell division protein ftsH homolog [Mycoplasma agalactiae]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           MP  ILL GP G GKT +++  A  A  PF  +  + F E+ +VG   ++ +R +VD A
Sbjct: 231 MPHGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-FVGLGAKR-VRTVVDEA 287


>gi|302143743|emb|CBI22604.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  I
Sbjct: 549 RGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKI 606


>gi|227547924|ref|ZP_03977973.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079998|gb|EEI17961.1| ATP-dependent protease, ATPase subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 749

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT + S R   +  EL + IIGQ +A RAV+ ++R R R     A L+D   P  + +
Sbjct: 353 FKLTESESSRLLNMEDELHKRIIGQDEAVRAVSRSIR-RTR-----AGLKDPKRPSGSFI 406

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 407 FAGPSGVGKTELSKALAEF 425


>gi|225677314|ref|ZP_03788291.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590641|gb|EEH11891.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 768

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   I+ +++++ E   + R
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISR 552


>gi|224106305|ref|XP_002314122.1| predicted protein [Populus trichocarpa]
 gi|222850530|gb|EEE88077.1| predicted protein [Populus trichocarpa]
          Length = 792

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 353 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 404


>gi|149239206|ref|XP_001525479.1| vesicular-fusion protein SEC18 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450972|gb|EDK45228.1| vesicular-fusion protein SEC18 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 798

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 10/58 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKV----------EVTKFTEIGYVGRNVEQ 101
           +++LL GP GVGKTAI+  LA  +G PFIK+          E  K  EI  V R+V +
Sbjct: 598 RSMLLYGPPGVGKTAIATTLALNSGFPFIKMLSAETLVGMGEARKIQEIDNVFRDVHK 655


>gi|37680899|ref|NP_935508.1| ATP-dependent Zn protease [Vibrio vulnificus YJ016]
 gi|320155434|ref|YP_004187813.1| cell division protein FtsH [Vibrio vulnificus MO6-24/O]
 gi|326423870|ref|NP_760579.2| cell division protein FtsH [Vibrio vulnificus CMCP6]
 gi|37199649|dbj|BAC95479.1| ATP-dependent Zn protease [Vibrio vulnificus YJ016]
 gi|319930746|gb|ADV85610.1| cell division protein FtsH [Vibrio vulnificus MO6-24/O]
 gi|319999243|gb|AAO10106.2| Cell division protein ftsH [Vibrio vulnificus CMCP6]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|148549786|ref|YP_001269888.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|148513844|gb|ABQ80704.1| membrane protease FtsH catalytic subunit [Pseudomonas putida F1]
 gi|313500627|gb|ADR61993.1| FtsH [Pseudomonas putida BIRD-1]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|113971326|ref|YP_735119.1| ATPase [Shewanella sp. MR-4]
 gi|114048563|ref|YP_739113.1| ATPase [Shewanella sp. MR-7]
 gi|117921607|ref|YP_870799.1| ATPase [Shewanella sp. ANA-3]
 gi|113886010|gb|ABI40062.1| ATPase AAA-2 domain protein [Shewanella sp. MR-4]
 gi|113890005|gb|ABI44056.1| ATPase AAA-2 domain protein [Shewanella sp. MR-7]
 gi|117613939|gb|ABK49393.1| ATPase AAA-2 domain protein [Shewanella sp. ANA-3]
          Length = 857

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +      +  +++++++F E   V R V
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHAVSRLV 647


>gi|332300078|ref|YP_004441999.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177141|gb|AEE12831.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 703

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT  ++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 244 IPKGALLVGPPGTGKTLFAKAVAGEAHVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 300


>gi|329961929|ref|ZP_08299942.1| putative phage head-tail adaptor [Bacteroides fluxus YIT 12057]
 gi|328531152|gb|EGF58002.1| putative phage head-tail adaptor [Bacteroides fluxus YIT 12057]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|308322395|gb|ADO28335.1| 26S protease regulatory subunit 6b [Ictalurus furcatus]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 172 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 226

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 227 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254


>gi|229592643|ref|YP_002874762.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|229364509|emb|CAY52361.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|224007545|ref|XP_002292732.1| ftsh-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220971594|gb|EED89928.1| ftsh-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 358

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P  +LL GP G GKT ++R  A  AG P +    + F E+ +VGR   ++
Sbjct: 116 PTGLLLEGPPGTGKTMLARATAATAGVPLLYCSGSDFVEM-FVGRGAARV 164


>gi|77993702|gb|ABB13464.1| 26S proteasome subunit RPT3 [Schistosoma mansoni]
          Length = 381

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 164 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 218

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 219 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|114778158|ref|ZP_01453045.1| AAA ATPase, central region:Clp, N terminal [Mariprofundus
           ferrooxydans PV-1]
 gi|114551576|gb|EAU54130.1| AAA ATPase, central region:Clp, N terminal [Mariprofundus
           ferrooxydans PV-1]
          Length = 752

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT  +R+LAR+ G   I+ +++++ E   V R
Sbjct: 492 SFLFTGPTGVGKTEAARQLARIMGVELIRFDMSEYMESHTVSR 534


>gi|120611285|ref|YP_970963.1| FtsH peptidase [Acidovorax citrulli AAC00-1]
 gi|120589749|gb|ABM33189.1| membrane protease FtsH catalytic subunit [Acidovorax citrulli
           AAC00-1]
          Length = 641

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|88602331|ref|YP_502509.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
 gi|88187793|gb|ABD40790.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
          Length = 387

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT +++ +A  A A FI++  ++     Y+G    Q++R+L  +A
Sbjct: 167 PKGILLHGPPGTGKTLLAKAVAHNAKATFIRMSGSELVH-KYIGEGA-QMVRELFSLA 222


>gi|68064117|ref|XP_674053.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56492342|emb|CAH98285.1| hypothetical protein PB000912.02.0 [Plasmodium berghei]
          Length = 337

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILL G  G GKT I+R +A  A  PFI+   ++F E+ +VG
Sbjct: 283 LPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEM-FVG 326


>gi|49388451|dbj|BAD25581.1| cell division protein FtsH3-like [Oryza sativa Japonica Group]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 107 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 158


>gi|47230511|emb|CAF99704.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 826

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI- 92
           L+N  R  QL A +     PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+ 
Sbjct: 240 LKNPERYLQLGAKV-----PKGSLLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 294

Query: 93  -GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-------EERILDALV 139
            G     V  + ++    A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 295 GGLGAARVRSLFKEARSRAPCIVYIDEIDAVGKKRSTNMSGFSNTEEEQTLNQLL 349


>gi|116513529|ref|YP_812435.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116092844|gb|ABJ57997.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|302387305|ref|YP_003823127.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302197933|gb|ADL05504.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 204 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFYSLSGSDFVEM-FVGVGASR-VRDLFKQA 260


>gi|319763182|ref|YP_004127119.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans
           BC]
 gi|330825245|ref|YP_004388548.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|317117743|gb|ADV00232.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           BC]
 gi|329310617|gb|AEB85032.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 206 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 262


>gi|258539996|ref|YP_003174495.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|257151672|emb|CAR90644.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 433 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 484

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 485 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 528


>gi|258508818|ref|YP_003171569.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus GG]
 gi|257148745|emb|CAR87718.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus GG]
          Length = 740

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 431 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 482

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 483 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 526


>gi|239946944|ref|ZP_04698697.1| cell division protease FtsH [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921220|gb|EER21244.1| cell division protease FtsH [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 187 IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFNISGSDFVEM-FVG 230


>gi|239627702|ref|ZP_04670733.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517848|gb|EEQ57714.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 724

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 203 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFYSLSGSDFVEM-FVGVGASR-VRDL 255


>gi|212637926|ref|YP_002314446.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
 gi|212559406|gb|ACJ32461.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
          Length = 813

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 509 LHSRVIGQEEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 562


>gi|195978193|ref|YP_002123437.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974898|gb|ACG62424.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KEISNRLKGHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|163954986|ref|YP_001648090.1| hypothetical protein OsV5_013r [Ostreococcus virus OsV5]
 gi|163638435|gb|ABY27794.1| hypothetical protein OsV5_013r [Ostreococcus virus OsV5]
          Length = 579

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL G  G GKT ++R +A  +  PFI+     F E+ +VG   ++ +RD+ +VA
Sbjct: 177 IPRGALLAGKPGTGKTLLARAIAGESNVPFIQCSAANFVEM-FVGVGAKR-VRDIFEVA 233


>gi|325285489|ref|YP_004261279.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
 gi|324320943|gb|ADY28408.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 284


>gi|326317393|ref|YP_004235065.1| ATP-dependent metalloprotease FtsH [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374229|gb|ADX46498.1| ATP-dependent metalloprotease FtsH [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 641

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|262163949|ref|ZP_06031688.1| cell division protein FtsH [Vibrio mimicus VM223]
 gi|262027477|gb|EEY46143.1| cell division protein FtsH [Vibrio mimicus VM223]
          Length = 632

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 157 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 210

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 211 FVGVGASR-VRDMFEQA 226


>gi|260753989|ref|YP_003226882.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553352|gb|ACV76298.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 864

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+DA +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGKRVIGQEDAVKAVSRAVR-RAR-----AGLQDPSRPIGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     ++++++++ E   V R
Sbjct: 621 SFLFDDDRAMVRIDMSEYMEKHAVAR 646


>gi|254584398|ref|XP_002497767.1| ZYRO0F13024p [Zygosaccharomyces rouxii]
 gi|238940660|emb|CAR28834.1| ZYRO0F13024p [Zygosaccharomyces rouxii]
          Length = 740

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R  A  AG  F  +  ++F E+ YVG   ++ +R+L   A
Sbjct: 306 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-VRELFSQA 362


>gi|254508226|ref|ZP_05120350.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
 gi|219548843|gb|EED25844.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|239826400|ref|YP_002949024.1| ATPase AAA [Geobacillus sp. WCH70]
 gi|239806693|gb|ACS23758.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 19/159 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L + +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 424 KHLEENLAKKVIGQEEAVKKVAKAIR-RSR-----AGLKAKHRPIGSFLFVGPTGVGKTE 477

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++ LA  L G+    I+++++++ E   V +        L+      V      ++ E+
Sbjct: 478 LAKTLAEELFGSKDAMIRLDMSEYMEKHSVSK--------LIGSPPGYVGHEEAGQLTEK 529

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              N    IL   + K A  + + +F + L DG ++D +
Sbjct: 530 VRRNPYSIILLDEIEK-AHPDVQHIFLQILEDGRLTDSQ 567


>gi|123446639|ref|XP_001312068.1| proteasome endopeptidase complex [Trichomonas vaginalis G3]
 gi|121893902|gb|EAX99138.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis
           G3]
          Length = 391

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 22/132 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK  LL GP G GKT I+R +A    A F+KV      +  YVG +  +I+R++ + A  
Sbjct: 169 PKGALLYGPPGTGKTLIARAIAANTNAKFLKVVAASLFD-RYVGESA-RIVREMFNYA-- 224

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164
                 RD   E   I  +E  +DAL GK     +S  REV R  +      DG  S  +
Sbjct: 225 ------RDN--EPCIIFIDE--IDALGGKRLEEGSSTDREVQRTLMELLAQMDGFSSTSK 274

Query: 165 IDIEVADTSSDI 176
           + + +A    DI
Sbjct: 275 VKVIMATNRPDI 286


>gi|110749420|ref|XP_624548.2| PREDICTED: AFG3-like protein 2-like [Apis mellifera]
          Length = 803

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 333 IPKGAMLTGPPGTGKTLLAKATAGEANVPFISVSGSEFLEM-FVGVGPSR-VRDMFALA 389


>gi|90580529|ref|ZP_01236334.1| putative cell division protein FtsH [Vibrio angustum S14]
 gi|90438187|gb|EAS63373.1| putative cell division protein FtsH [Photobacterium angustum S14]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 173 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 227 FVGVGASR-VRDMFEQA 242


>gi|70734331|ref|YP_257971.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
 gi|68348630|gb|AAY96236.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
 gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK ILL GP G GKT ++R LA   GA FI V     ++KF   G   + + +I ++  +
Sbjct: 213 PKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKF--YGESEQRIREIFKEAEE 270

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE  +   E+R+       +D + G+        +N  +    
Sbjct: 271 NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDP 330

Query: 154 KLRDGEISDKEIDIEVADT 172
            LR     D+EI+I   DT
Sbjct: 331 ALRRPGRFDREIEIRPPDT 349



 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PK ILL GP G GKT +++ +A  +GA FI V   +     +VG + E+ IR++
Sbjct: 488 PKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILS-KWVGES-EKAIREI 539


>gi|15597816|ref|NP_251310.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa PAO1]
 gi|107102142|ref|ZP_01366060.1| hypothetical protein PaerPA_01003192 [Pseudomonas aeruginosa PACS2]
 gi|116050607|ref|YP_790574.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152987799|ref|YP_001347951.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PA7]
 gi|218891219|ref|YP_002440085.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa LESB58]
 gi|254235606|ref|ZP_04928929.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa C3719]
 gi|254241053|ref|ZP_04934375.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa 2192]
 gi|296388921|ref|ZP_06878396.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PAb1]
 gi|313107657|ref|ZP_07793840.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa 39016]
 gi|9948686|gb|AAG06008.1|AE004690_8 ATP-binding protease component ClpA [Pseudomonas aeruginosa PAO1]
 gi|115585828|gb|ABJ11843.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167537|gb|EAZ53048.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa C3719]
 gi|126194431|gb|EAZ58494.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa 2192]
 gi|150962957|gb|ABR84982.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PA7]
 gi|218771444|emb|CAW27211.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa LESB58]
 gi|310880342|gb|EFQ38936.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa 39016]
          Length = 758

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E++  L+R     + GQ DA  +++ A++         A L+    P  + L  GPT
Sbjct: 449 SDKELLRNLERDLKLTVFGQDDAIESLSTAIKLSR------AGLKAPDKPVGSFLFAGPT 502

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++R+LA+  G   ++ +++++ E   V R
Sbjct: 503 GVGKTEVARQLAKALGVELVRFDMSEYMERHTVSR 537


>gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 750

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 21/141 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK ILL GP GVGKT ++R LA   GA FI +     ++KF   G     + QI  +   
Sbjct: 211 PKGILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKF--YGESEERLRQIFDEANK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE+ +   E+R+       +D + G+        +N  +    
Sbjct: 269 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKIIVIGATNRPDAIDP 328

Query: 154 KLRDGEISDKEIDIEVADTSS 174
            LR     D+EI+I   DT +
Sbjct: 329 ALRRPGRFDREIEIRPPDTKA 349



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT +++ +A  +GA FI V
Sbjct: 486 PKGVLLFGPPGTGKTMLAKAVATESGANFIAV 517


>gi|323497767|ref|ZP_08102781.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
 gi|323317114|gb|EGA70111.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|295676449|ref|YP_003604973.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1002]
 gi|295436292|gb|ADG15462.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1002]
          Length = 865

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I S+L   ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIESKLHERVVGQDEAISAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     +    I++++++F E   V R
Sbjct: 621 CKALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|225870479|ref|YP_002746426.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. equi 4047]
 gi|225699883|emb|CAW93779.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus equi subsp. equi 4047]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 407 KEISNRLKGHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 459

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 460 ELAKQLA 466


>gi|224059324|ref|XP_002299826.1| predicted protein [Populus trichocarpa]
 gi|222847084|gb|EEE84631.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 364 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 415


>gi|222149908|ref|YP_002550865.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
 gi|221736890|gb|ACM37853.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 868

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKSVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKSL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 621 ARFLFDDETAMVRLDMSEYMEKHSVSR 647


>gi|218885562|ref|YP_002434883.1| ATP-dependent Clp protease ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756516|gb|ACL07415.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 816

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 4   TFNFSPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLV 59
           T + S R+ +  LD   R ++  QDA  AV I  R   R +   A L  E  P  + L  
Sbjct: 443 TVSSSDRDRLRTLDEDLRNVVFGQDA--AVGILSRAILRAR---AGLGREDRPTGSFLFY 497

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GPTGVGKT ++RRLA + G  F++ +++++ E   V R
Sbjct: 498 GPTGVGKTELARRLAEVMGIGFLRYDMSEYMEKHSVSR 535


>gi|257057942|ref|YP_003135830.1| ATPase AAA [Cyanothece sp. PCC 8802]
 gi|256588108|gb|ACU98994.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8802]
          Length = 789

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 10/82 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L   IIGQ++A +AV+ A+R R R       L++   P  + +  GPTGVGKT +++ 
Sbjct: 473 AQLHESIIGQEEAVKAVSRAVR-RAR-----VGLKNPHRPVASFIFAGPTGVGKTELTKA 526

Query: 73  LAR-LAGA--PFIKVEVTKFTE 91
           LAR L G+    I++++++F E
Sbjct: 527 LARYLFGSEEAMIRLDMSEFME 548


>gi|167764968|ref|ZP_02437089.1| hypothetical protein BACSTE_03361 [Bacteroides stercoris ATCC
           43183]
 gi|167697637|gb|EDS14216.1| hypothetical protein BACSTE_03361 [Bacteroides stercoris ATCC
           43183]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|160891209|ref|ZP_02072212.1| hypothetical protein BACUNI_03657 [Bacteroides uniformis ATCC 8492]
 gi|270294492|ref|ZP_06200694.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481095|ref|ZP_07940174.1| ATP-dependent metallopeptidase HflB [Bacteroides sp. 4_1_36]
 gi|156859430|gb|EDO52861.1| hypothetical protein BACUNI_03657 [Bacteroides uniformis ATCC 8492]
 gi|270275959|gb|EFA21819.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902808|gb|EFV24683.1| ATP-dependent metallopeptidase HflB [Bacteroides sp. 4_1_36]
          Length = 670

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|124514865|gb|EAY56376.1| Peptidase M41, FtsH [Leptospirillum rubarum]
          Length = 599

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL +
Sbjct: 185 IPKGVLVVGPPGTGKTLLAKAIAGEADVPFYHISGSDFVEM-FVGVGASR-VRDLFE 239


>gi|124023163|ref|YP_001017470.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
 gi|123963449|gb|ABM78205.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           L+P+ +LLVG  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 194 LIPRGVLLVGAPGTGKTLLAKAIAGEADVPFFSMAASEFVEL-FVGVGASR-VRDL 247


>gi|118590089|ref|ZP_01547493.1| ATP-dependent Zn protease [Stappia aggregata IAM 12614]
 gi|118437586|gb|EAV44223.1| ATP-dependent Zn protease [Stappia aggregata IAM 12614]
          Length = 342

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           W    LP    D+     ILL+G  G GKT  ++ LAR  GA F++  ++K   +G++G
Sbjct: 216 WSEGALPWSDVDQ----GILLLGGPGTGKTIFAKALARSCGATFVECSLSKTQALGHLG 270


>gi|99034625|ref|ZP_01314579.1| hypothetical protein Wendoof_01000606 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 541

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|18408352|ref|NP_566889.1| ftsh7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75337073|sp|Q9SD67|FTSH7_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 7,
           chloroplastic; Short=AtFTSH7; Flags: Precursor
 gi|6522587|emb|CAB61952.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|332644718|gb|AEE78239.1| cell division protease ftsH-7 [Arabidopsis thaliana]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 358 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 409


>gi|114561854|ref|YP_749367.1| ATPase [Shewanella frigidimarina NCIMB 400]
 gi|114333147|gb|ABI70529.1| ATPase AAA-2 domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 865

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 572 TALHERVIGQNEAVDAVSNAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTELCKS 625

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA+    + +  +++++++F E   V R V
Sbjct: 626 LAKFLFDSESALVRIDMSEFMEKHTVSRLV 655


>gi|319901125|ref|YP_004160853.1| ATP-dependent metalloprotease FtsH [Bacteroides helcogenes P
           36-108]
 gi|319416156|gb|ADV43267.1| ATP-dependent metalloprotease FtsH [Bacteroides helcogenes P
           36-108]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|302668717|ref|YP_003832542.1| ATP-dependent metallopeptidase HflB3 [Butyrivibrio proteoclasticus
           B316]
 gi|302397057|gb|ADL35960.1| ATP-dependent metallopeptidase HflB3 [Butyrivibrio proteoclasticus
           B316]
          Length = 608

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +PK +LL+GP G GKT +++ +A  AG  FI     K     +VG    +I
Sbjct: 213 VPKGLLLIGPPGTGKTMLAKAVAHEAGVTFIYQNSAKVVNNAFVGTGPARI 263


>gi|299749019|ref|XP_001838441.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130]
 gi|298408245|gb|EAU83375.2| ATP-dependent protease La [Coprinopsis cinerea okayama7#130]
          Length = 1370

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG--------YVGRN 98
           K I LVGP GVGKT++ R +AR  G  F +V V   T++         YVG N
Sbjct: 542 KIICLVGPPGVGKTSVGRSVARCVGRRFGRVSVGGLTDVAEVKGHRRTYVGAN 594


>gi|284046875|ref|YP_003397215.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
 gi|310943103|sp|D3EZK2|FTSH3_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|283951096|gb|ADB53840.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
          Length = 749

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91
           L+N  + Q+L   +     PK +LL G  G GKT ++R +A  AG PF  +  ++F E  
Sbjct: 260 LKNPQKYQRLGGKI-----PKGVLLSGQPGTGKTLLARAVAGEAGVPFFSMSASEFVEMI 314

Query: 92  IGYVGRNVEQIIRDLVDVAINIV 114
           +G     V  + R   + A  I+
Sbjct: 315 VGVGASRVRDLFRQAKEAAPAII 337


>gi|262340999|ref|YP_003283854.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272336|gb|ACY40244.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 644

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 222 IPKGALLIGPPGTGKTLLAKAVAGEARVPFFSLSGSDFVEM-FVGVGASR-VRDLFEKA 278


>gi|167750465|ref|ZP_02422592.1| hypothetical protein EUBSIR_01441 [Eubacterium siraeum DSM 15702]
 gi|167656616|gb|EDS00746.1| hypothetical protein EUBSIR_01441 [Eubacterium siraeum DSM 15702]
 gi|291557659|emb|CBL34776.1| ATPases with chaperone activity, ATP-binding subunit [Eubacterium
           siraeum V10Sc8a]
          Length = 761

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA- 74
           L   ++GQ +A   VA A++    R QL A  R    P + + VGPTGVGKT + + LA 
Sbjct: 469 LKSKVVGQDEACELVAAAIKRT--RVQLSARRR----PASFIFVGPTGVGKTELVKVLAN 522

Query: 75  RLAGA--PFIKVEVTKFTEIGYVGR 97
            L     P I++++++F E   V R
Sbjct: 523 ELFNTVDPLIRLDMSEFMEKHSVSR 547


>gi|187251727|ref|YP_001876209.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
 gi|186971887|gb|ACC98872.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L   L     PK +LL G  G GKT +++  A  AG  F     ++F E+ 
Sbjct: 180 LKNPKKFQKLGGKL-----PKGVLLYGAPGTGKTLLAKATAGEAGVAFFSASASEFVEM- 233

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL D A
Sbjct: 234 FVGVGASR-VRDLFDKA 249


>gi|88797616|ref|ZP_01113205.1| cell division protein FtsH [Reinekea sp. MED297]
 gi|88779788|gb|EAR10974.1| cell division protein FtsH [Reinekea sp. MED297]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLMVGPPGTGKTLLAKAIAGEARVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|71029588|ref|XP_764437.1| ATP-dependent Clp protease ATP-binding subunit [Theileria parva
           strain Muguga]
 gi|68351391|gb|EAN32154.1| ATP-dependent Clp protease ATP-binding subunit, putative [Theileria
           parva]
          Length = 900

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L + +IGQ++A + V  A+R      +   ++++   P  + L  GP GVGK+ 
Sbjct: 565 RNMEEDLHKMVIGQEEAVKNVCKAIR------RAKTNIKNPNRPIGSFLFCGPPGVGKSE 618

Query: 69  ISRRLAR--LAGAPFIKVEVTKFTEIGYVGR 97
           ++R L +   A    I+++++++TE   + R
Sbjct: 619 VARALTKYLFAKENLIRIDMSEYTEPHSISR 649


>gi|329957559|ref|ZP_08298034.1| putative phage head-tail adaptor [Bacteroides clarus YIT 12056]
 gi|328522436|gb|EGF49545.1| putative phage head-tail adaptor [Bacteroides clarus YIT 12056]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|325684709|gb|EGD26863.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|294464641|gb|ADE77829.1| unknown [Picea sitchensis]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86
           PK +LL GP G GKT +++ +AR +GA FI V V
Sbjct: 118 PKGVLLYGPPGTGKTLLAKAIARESGAVFINVRV 151


>gi|295690175|ref|YP_003593868.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Caulobacter
           segnis ATCC 21756]
 gi|295432078|gb|ADG11250.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           segnis ATCC 21756]
          Length = 776

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L R + GQ +A   ++ A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 462 KELETDLKRAVFGQDEALTQLSAAMKLAR------AGLREPNKPIGSYLFSGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
            +++LA+  G   ++ +++++ E            GYVG +    + D VD
Sbjct: 516 AAKQLAQTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGQLTDAVD 566


>gi|258623148|ref|ZP_05718159.1| cell division protein FtsH [Vibrio mimicus VM573]
 gi|258584568|gb|EEW09306.1| cell division protein FtsH [Vibrio mimicus VM573]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|225630912|ref|YP_002727703.1| cell division protein FtsH [Wolbachia sp. wRi]
 gi|225592893|gb|ACN95912.1| cell division protein FtsH [Wolbachia sp. wRi]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|169607965|ref|XP_001797402.1| hypothetical protein SNOG_07047 [Phaeosphaeria nodorum SN15]
 gi|160701526|gb|EAT85698.2| hypothetical protein SNOG_07047 [Phaeosphaeria nodorum SN15]
          Length = 722

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L +++ GQ +A ++VA A+R +       A L  E  P  + +++GPTGVGKT + +RLA
Sbjct: 419 LRQFVKGQDEALKSVANAIRLQR------AGLSGEHRPIASFMMLGPTGVGKTEVCKRLA 472

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGR 97
             L   P   I+ ++++F+E   V R
Sbjct: 473 EYLFSTPQAVIRFDMSEFSEKHTVSR 498


>gi|163802297|ref|ZP_02196191.1| cell division protein FtsH [Vibrio sp. AND4]
 gi|159173826|gb|EDP58640.1| cell division protein FtsH [Vibrio sp. AND4]
          Length = 658

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|148242005|ref|YP_001227162.1| chaperone ClpB [Synechococcus sp. RCC307]
 gi|147850315|emb|CAK27809.1| Chaperone ClpB [Synechococcus sp. RCC307]
          Length = 863

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           +IGQ DA RAVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ LA    
Sbjct: 576 VIGQGDAVRAVADAI------QRSRAGLSDPRRPIASFLFLGPTGVGKTELSKALANQLF 629

Query: 77  -AGAPFIKVEVTKFTEIGYVGR 97
            +    ++++++++ E   V R
Sbjct: 630 DSDDAMVRIDMSEYMEKHAVSR 651


>gi|167035710|ref|YP_001670941.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
 gi|166862198|gb|ABZ00606.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|119775735|ref|YP_928475.1| clpB protein [Shewanella amazonensis SB2B]
 gi|119768235|gb|ABM00806.1| clpB protein [Shewanella amazonensis SB2B]
          Length = 857

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +      +  +++++++F E   V R V
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|117617504|ref|YP_857801.1| ATP-dependent metallopeptidase HflB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558911|gb|ABK35859.1| ATP-dependent metallopeptidase HflB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPTGVLLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|85701297|sp|Q503W7|ATD1B_DANRE RecName: Full=ATPase family AAA domain-containing protein 1-B
          Length = 362

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 130 PKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWY 171


>gi|76801769|ref|YP_326777.1| AAA-type ATPase [Natronomonas pharaonis DSM 2160]
 gi|76557634|emb|CAI49217.1| AAA-type ATPase [Natronomonas pharaonis DSM 2160]
          Length = 442

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
           +L VGP G GKT+++R LA+    PF++V+++  T   +G   +NV++
Sbjct: 208 LLFVGPPGTGKTSVARALAQDLDLPFVEVKLSMITSQYLGETAKNVDK 255


>gi|300726155|ref|ZP_07059612.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
 gi|299776625|gb|EFI73178.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
          Length = 821

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ +A   V  A+      +   A L+D+  P  ++L VGPTGVGKT ++R LA+  G
Sbjct: 537 IYGQDEAISQVVEAV------EMAKAGLQDDNKPLASLLFVGPTGVGKTEVARVLAQQLG 590

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              ++ +++++ E            GYVG     ++ D +    N V
Sbjct: 591 IELVRFDMSEYMEKHAVAKLIGSPAGYVGYEDGGLLVDAIRKTPNCV 637


>gi|294054596|ref|YP_003548254.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293613929|gb|ADE54084.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 827

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ SEL   +IGQ  A   ++ ALR R R     ADL+D   P  + + +GPTGVGKT +
Sbjct: 514 QLESELQHEVIGQNRATEVISKALR-RSR-----ADLKDPKRPIGSFMFLGPTGVGKTLL 567

Query: 70  SRRLA 74
           ++ LA
Sbjct: 568 AKVLA 572


>gi|291227165|ref|XP_002733557.1| PREDICTED: Rpt3-like [Saccoglossus kowalevskii]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 148 KQEIREAVELPLTHHDLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 202

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 203 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 228


>gi|281207204|gb|EFA81387.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I++ +A  + A F  +  +  T   YVG   E+++R L  VA
Sbjct: 463 PKGLLLFGPPGNGKTMIAKAVAYESKATFFSISASSLTS-KYVGEG-EKLVRALFAVA 518


>gi|259650122|dbj|BAI42284.1| Clp protease ATP-binding subunit [Lactobacillus rhamnosus GG]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 388 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 439

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 440 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 483


>gi|225868474|ref|YP_002744422.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701750|emb|CAW99127.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus equi subsp. zooepidemicus]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +EI + L  ++IGQ  A  AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KEISNRLKGHVIGQDGAVEAVARAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|260063604|ref|YP_003196684.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
 gi|88783049|gb|EAR14222.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
          Length = 696

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 284


>gi|330807477|ref|YP_004351939.1| cell division protein FtsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375585|gb|AEA66935.1| Putative cell division protein FtsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|323485846|ref|ZP_08091181.1| hypothetical protein HMPREF9474_02932 [Clostridium symbiosum
           WAL-14163]
 gi|323400834|gb|EGA93197.1| hypothetical protein HMPREF9474_02932 [Clostridium symbiosum
           WAL-14163]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 216 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFYSLSGSDFVEM-FVGVGASR-VRDLFKQA 272


>gi|315651509|ref|ZP_07904530.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315486244|gb|EFU76605.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 624

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 171 VAGEDEAKESLTEIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           A  PF  +  + F E+ +VG    + +RDL
Sbjct: 226 ADVPFFSLSGSDFVEM-FVGVGASR-VRDL 253


>gi|260771179|ref|ZP_05880106.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
 gi|260613776|gb|EEX38968.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|225677083|ref|ZP_03788087.1| cell division protein FtsH [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590879|gb|EEH12102.1| cell division protein FtsH [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 612

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|156975669|ref|YP_001446576.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
 gi|156527263|gb|ABU72349.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|146163969|ref|XP_001012750.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146145857|gb|EAR92505.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  +G+ F  +  +  T   Y+G   E++++ L  +A
Sbjct: 468 PKGLLLFGPPGTGKTMIGKAIANQSGSTFFSISASSLTS-KYIGEG-EKMVKILFKLA 523


>gi|308812448|ref|XP_003083531.1| cell division protein (ISS) [Ostreococcus tauri]
 gi|116055412|emb|CAL58080.1| cell division protein (ISS) [Ostreococcus tauri]
          Length = 785

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           PK ILL GP G GKT +++ +A  AG PF     ++F E+ +VG
Sbjct: 335 PKGILLEGPPGTGKTLLAKAVAGEAGLPFFYANGSEFVEM-FVG 377


>gi|91228946|ref|ZP_01262843.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
 gi|91187506|gb|EAS73841.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
          Length = 569

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|66773100|ref|NP_001019592.1| ATPase family AAA domain-containing protein 1-B [Danio rerio]
 gi|63102141|gb|AAH95151.1| ATPase family, AAA domain containing 1b [Danio rerio]
 gi|182888770|gb|AAI64188.1| Atad1b protein [Danio rerio]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 130 PKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWY 171


>gi|56552320|ref|YP_163159.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761623|ref|ZP_04759710.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|56543894|gb|AAV90048.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373931|gb|EER63464.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 864

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+DA +AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGKRVIGQEDAVKAVSRAVR-RAR-----AGLQDPSRPIGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     ++++++++ E   V R
Sbjct: 621 SFLFDDDRAMVRIDMSEYMEKHAVAR 646


>gi|305664431|ref|YP_003860718.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
 gi|88708448|gb|EAR00684.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
          Length = 669

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 284


>gi|332530811|ref|ZP_08406737.1| ATP-dependent metalloprotease ftsh [Hylemonella gracilis ATCC
           19624]
 gi|332039723|gb|EGI76123.1| ATP-dependent metalloprotease ftsh [Hylemonella gracilis ATCC
           19624]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKGIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|327482032|gb|AEA85342.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|312963089|ref|ZP_07777574.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
 gi|311282600|gb|EFQ61196.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|224538106|ref|ZP_03678645.1| hypothetical protein BACCELL_02996 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520284|gb|EEF89389.1| hypothetical protein BACCELL_02996 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 698

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 277


>gi|239815605|ref|YP_002944515.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus S110]
 gi|239802182|gb|ACS19249.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus S110]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|183221237|ref|YP_001839233.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911328|ref|YP_001962883.1| ATP-dependent clp protease ATP-binding subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776004|gb|ABZ94305.1| ATP-dependent clp protease ATP-binding subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779659|gb|ABZ97957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 756

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+   + GQ  A   +  A+   + R    + L DE  P  + L VGPTGVGKT +++ L
Sbjct: 462 EIKTVVFGQDHAIEQIVDAIH--YSR----SGLGDEGKPIGSFLFVGPTGVGKTEVAKTL 515

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A   G  F++ +++++ E   V R
Sbjct: 516 AEKMGVEFLRFDMSEYMEKHSVSR 539


>gi|159901485|ref|YP_001547732.1| ATPase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894524|gb|ABX07604.1| ATPase AAA-2 domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 859

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           +IGQ +A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT ++R LA    
Sbjct: 575 VIGQHEAVKAVSDAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELARALAEFLF 628

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
              A  ++++++++ E   V R
Sbjct: 629 DDEAAMVRIDMSEYMERHAVAR 650


>gi|121594724|ref|YP_986620.1| FtsH peptidase [Acidovorax sp. JS42]
 gi|222110673|ref|YP_002552937.1| ATP-dependent metalloprotease ftsh [Acidovorax ebreus TPSY]
 gi|120606804|gb|ABM42544.1| membrane protease FtsH catalytic subunit [Acidovorax sp. JS42]
 gi|221730117|gb|ACM32937.1| ATP-dependent metalloprotease FtsH [Acidovorax ebreus TPSY]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|18978219|ref|NP_579576.1| tbp-interacting protein tip49 [Pyrococcus furiosus DSM 3638]
 gi|18894032|gb|AAL81971.1| tbp-interacting protein tip49 [Pyrococcus furiosus DSM 3638]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            + +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 39 MVGQVKAREAAGIAVK---------LIKQGKLAGKGILLVGPTGSGKTAIAMGIARELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|14591557|ref|NP_143639.1| hypothetical protein PH1804 [Pyrococcus horikoshii OT3]
 gi|3258240|dbj|BAA30923.1| 441aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            + +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 39 MVGQVKAREAAGIAVK---------LIKQGKLAGKGILLVGPTGSGKTAIAMGIARELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|323693185|ref|ZP_08107403.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
 gi|323502668|gb|EGB18512.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 216 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFYSLSGSDFVEM-FVGVGASR-VRDLFKQA 272


>gi|300812110|ref|ZP_07092558.1| putative negative regulator of genetic competence ClpC/MecB
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496949|gb|EFK32023.1| putative negative regulator of genetic competence ClpC/MecB
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|281347954|gb|EFB23538.1| hypothetical protein PANDA_019250 [Ailuropoda melanoleuca]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 289 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 342

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 343 FVGVGPAR-VRDLFALA 358


>gi|262401665|ref|ZP_06078231.1| cell division protein FtsH [Vibrio sp. RC586]
 gi|262352082|gb|EEZ01212.1| cell division protein FtsH [Vibrio sp. RC586]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|288941932|ref|YP_003444172.1| ATP-dependent Clp protease ATP-binding subunit clpA [Allochromatium
           vinosum DSM 180]
 gi|288897304|gb|ADC63140.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Allochromatium vinosum DSM 180]
          Length = 755

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 13/93 (13%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGV 64
           E +  LDR     + GQ  A  A+  A+R NR       + L  E  P  + L  GPTGV
Sbjct: 451 ESLKNLDRDLKMVVYGQDAAIDALTSAIRMNR-------SGLGHEEKPIGSFLFTGPTGV 503

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GKT ++R+LAR+ G   ++ +++++ E   V R
Sbjct: 504 GKTEVTRQLARILGMELLRFDMSEYMERHTVSR 536


>gi|238927153|ref|ZP_04658913.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
 gi|238884935|gb|EEQ48573.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
          Length = 650

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL + A
Sbjct: 178 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFEQA 234


>gi|258510801|ref|YP_003184235.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477527|gb|ACV57846.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 23/157 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNR---WRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++L   +IGQ +A R VA A+R      RR   P          + L VGPTGVGKT ++
Sbjct: 376 ADLAAVVIGQDEAVRQVARAIRRSRVGLRRGDRPIG--------SFLFVGPTGVGKTEMA 427

Query: 71  RRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           RRLA  L G+    I+++++++ E        +  +  L+      V   +  ++ EQ  
Sbjct: 428 RRLAEILFGSKDAMIRLDMSEYME--------KHSVSKLIGAPPGYVGYEQAGQLTEQVR 479

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            +    IL   + K A  + + +F + + DG ++D +
Sbjct: 480 RHPYSLILVDEIEK-AHPDVQHIFLQIMEDGRLTDSQ 515


>gi|226289495|gb|EEH45001.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb18]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   ++ 
Sbjct: 147 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFSLA 200

Query: 115 RE 116
           R+
Sbjct: 201 RK 202


>gi|218129237|ref|ZP_03458041.1| hypothetical protein BACEGG_00813 [Bacteroides eggerthii DSM 20697]
 gi|317475212|ref|ZP_07934479.1| ATP-dependent metallopeptidase HflB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988615|gb|EEC54935.1| hypothetical protein BACEGG_00813 [Bacteroides eggerthii DSM 20697]
 gi|316908665|gb|EFV30352.1| ATP-dependent metallopeptidase HflB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 681

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 223 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 275


>gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis]
          Length = 779

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 22/142 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ ILL GP G GKT +   +A   G P +++   +   IG V    EQ IRD+ ++A  
Sbjct: 246 PRGILLHGPPGCGKTLLGNAIAGQLGIPLLRLVGPEL--IGGVSGESEQRIRDVFEIAQQ 303

Query: 113 IVRESR-RDEV------REQASINAEERILDALVGK-------------TATSNTREVFR 152
                   DEV      RE +S + E R++  L+                  +N  EV  
Sbjct: 304 TAPCVLFLDEVDVIAQRRENSSKDMERRVVAQLLSCLDDFNKDSQQVLVVGATNRPEVLD 363

Query: 153 KKLRDGEISDKEIDIEVADTSS 174
             LR     D+EI + + D S+
Sbjct: 364 PALRRSGRFDREIMLGIPDESA 385


>gi|313123097|ref|YP_004033356.1| ATP-dependent clp protease, ATP-binding subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279660|gb|ADQ60379.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+R R R     + L+DE  P  + L +GPTGVGKT +++ +A
Sbjct: 510 LHERVIGQDDAVKAVANAIR-RSR-----SGLKDENRPIGSFLFLGPTGVGKTELAKAVA 563


>gi|262274889|ref|ZP_06052700.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
 gi|262221452|gb|EEY72766.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|258625326|ref|ZP_05720226.1| cell division protein FtsH [Vibrio mimicus VM603]
 gi|258582392|gb|EEW07241.1| cell division protein FtsH [Vibrio mimicus VM603]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|225681325|gb|EEH19609.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb03]
          Length = 430

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   ++ 
Sbjct: 147 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFSLA 200

Query: 115 RE 116
           R+
Sbjct: 201 RK 202


>gi|199598008|ref|ZP_03211432.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus rhamnosus HN001]
 gi|199591098|gb|EDY99180.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus rhamnosus HN001]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 390 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 441

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 442 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 485


>gi|251799676|ref|YP_003014407.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247547302|gb|ACT04321.1| ATPase AAA-2 domain protein [Paenibacillus sp. JDR-2]
          Length = 817

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 7/56 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           +IGQ+DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 510 VIGQEDAVKAVSRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|170040585|ref|XP_001848075.1| paraplegin [Culex quinquefasciatus]
 gi|167864185|gb|EDS27568.1| paraplegin [Culex quinquefasciatus]
          Length = 806

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 341 IPKGAMLTGPPGTGKTMLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 397


>gi|126664882|ref|ZP_01735866.1| ATP-dependent Zn protease [Marinobacter sp. ELB17]
 gi|126631208|gb|EBA01822.1| ATP-dependent Zn protease [Marinobacter sp. ELB17]
          Length = 651

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L++GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMIGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|146300355|ref|YP_001194946.1| ATP-dependent metalloprotease FtsH [Flavobacterium johnsoniae
           UW101]
 gi|146154773|gb|ABQ05627.1| ATP-dependent metalloprotease FtsH; peptidase family M41
           [Flavobacterium johnsoniae UW101]
          Length = 641

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 280


>gi|260906307|ref|ZP_05914629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Brevibacterium linens BL2]
          Length = 115

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 59/97 (60%), Gaps = 10/97 (10%)

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           + +L+++    ILT+ ++ L+ QY+ + + + + L F  D+++A++D+A+ L  T    G
Sbjct: 5   VSTLDRAALISILTEPKNALVKQYQRMFEFDNVELRFETDALEAISDLAL-LRGT----G 59

Query: 386 ARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419
           AR L++++E VL+ + F   S  D+ E  VV+  E V
Sbjct: 60  ARGLRSILEEVLQPVMFDVPSREDIAE--VVVTREVV 94


>gi|71893558|ref|YP_279004.1| cell division protein [Mycoplasma hyopneumoniae J]
 gi|72080545|ref|YP_287603.1| cell division protein [Mycoplasma hyopneumoniae 7448]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +P+ ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 262 IPRGILLGGPPGTGKTLLAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 317


>gi|77456999|ref|YP_346504.1| membrane protease FtsH catalytic subunit [Pseudomonas fluorescens
           Pf0-1]
 gi|77381002|gb|ABA72515.1| cell division protein [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|146278848|ref|YP_001169007.1| ATPase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557089|gb|ABP71702.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 870

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+ A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 562 ELGKRVIGQRPALTAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642


>gi|77411174|ref|ZP_00787526.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae CJB111]
 gi|77162792|gb|EAO73751.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae CJB111]
          Length = 625

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ + L   +IGQ DA  AVA A+R R R     A   D   P  + L VGPTGVGKT 
Sbjct: 332 KELGNRLKGKVIGQNDAVEAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 385

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 386 LAKQLA 391


>gi|325298616|ref|YP_004258533.1| ATP-dependent metalloprotease FtsH [Bacteroides salanitronis DSM
           18170]
 gi|324318169|gb|ADY36060.1| ATP-dependent metalloprotease FtsH [Bacteroides salanitronis DSM
           18170]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 232 IPKGALLIGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDL 284


>gi|292669436|ref|ZP_06602862.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
 gi|292648889|gb|EFF66861.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL + A
Sbjct: 177 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFEQA 233


>gi|261212252|ref|ZP_05926538.1| cell division protein FtsH [Vibrio sp. RC341]
 gi|260838860|gb|EEX65511.1| cell division protein FtsH [Vibrio sp. RC341]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|171059498|ref|YP_001791847.1| ATP-dependent metalloprotease FtsH [Leptothrix cholodnii SP-6]
 gi|170776943|gb|ACB35082.1| ATP-dependent metalloprotease FtsH [Leptothrix cholodnii SP-6]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 IPRGVLMVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 248


>gi|144227508|gb|AAZ44293.2| cell division protein [Mycoplasma hyopneumoniae J]
 gi|144575319|gb|AAZ53580.2| cell division protein [Mycoplasma hyopneumoniae 7448]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +P+ ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 261 IPRGILLGGPPGTGKTLLAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 316


>gi|33863028|ref|NP_894588.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
 gi|33634945|emb|CAE20931.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           L+P+ +LLVG  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 194 LIPRGVLLVGAPGTGKTLLAKAIAGEADVPFFSMAASEFVEL-FVGVGASR-VRDL 247


>gi|108803521|ref|YP_643458.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108764764|gb|ABG03646.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 886

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT ++R LA  L 
Sbjct: 582 VVGQDEAVEAVAEAIR-RAR-----AGLSDPNRPIGSFLFLGPTGVGKTELARTLAEALF 635

Query: 78  G--APFIKVEVTKFTEIGYVGRNV 99
           G  A  +++++++F E   V R V
Sbjct: 636 GDEAAMVRIDMSEFQERHTVSRLV 659


>gi|119775191|ref|YP_927931.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           amazonensis SB2B]
 gi|119767691|gb|ABM00262.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           amazonensis SB2B]
          Length = 753

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++++  L+R     + GQ  A  +++ A+R    R  L AD +      + L  GPTG
Sbjct: 446 SDKDMLKNLERNLKMVVFGQDKAIESLSAAIR--LSRSGLGADNKP---VGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           VGKT ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 501 VGKTEVTNQLAKCLGLKLVRFDMSEYMEAHTVSRLIGAPPGYVGYDQGGLLTDAV 555


>gi|331001887|ref|ZP_08325408.1| hypothetical protein HMPREF0491_00270 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412210|gb|EGG91604.1| hypothetical protein HMPREF0491_00270 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 592

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 169 LPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 225


>gi|319953847|ref|YP_004165114.1| ATP-dependent metalloprotease ftsh [Cellulophaga algicola DSM
           14237]
 gi|319422507|gb|ADV49616.1| ATP-dependent metalloprotease FtsH [Cellulophaga algicola DSM
           14237]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 284


>gi|313886703|ref|ZP_07820413.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923865|gb|EFR34664.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT  ++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 258 IPKGALLVGPPGTGKTLFAKAVAGEAHVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 314


>gi|312135577|ref|YP_004002915.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775628|gb|ADQ05115.1| ATPase AAA-2 domain protein [Caldicellulosiruptor owensensis OL]
          Length = 829

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L R ++GQ +A +AVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT ++R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELARALAEALFGTEDALIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|227894506|ref|ZP_04012311.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
 gi|227863665|gb|EEJ71086.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|221116355|ref|XP_002163196.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 745

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A L     P  +LL+GP G GKT ++R +A  A  PF     ++F E+ 
Sbjct: 329 LKNPEKFQKLGAKL-----PGGVLLIGPPGTGKTLLARAIAGEADVPFFFASGSEFDEM- 382

Query: 94  YVG 96
           +VG
Sbjct: 383 FVG 385


>gi|218262673|ref|ZP_03477031.1| hypothetical protein PRABACTJOHN_02710 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223249|gb|EEC95899.1| hypothetical protein PRABACTJOHN_02710 [Parabacteroides johnsonii
           DSM 18315]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDL 279


>gi|195375640|ref|XP_002046608.1| GJ12976 [Drosophila virilis]
 gi|194153766|gb|EDW68950.1| GJ12976 [Drosophila virilis]
          Length = 813

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 347 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 403


>gi|189468122|ref|ZP_03016907.1| hypothetical protein BACINT_04517 [Bacteroides intestinalis DSM
           17393]
 gi|189436386|gb|EDV05371.1| hypothetical protein BACINT_04517 [Bacteroides intestinalis DSM
           17393]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASR-VRDL 276


>gi|162452666|ref|YP_001615033.1| ABC transporter ATPase [Sorangium cellulosum 'So ce 56']
 gi|161163248|emb|CAN94553.1| ATPase with chaperone activity, two ATP-bindingdomains [Sorangium
           cellulosum 'So ce 56']
          Length = 771

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L   I GQ +A + +A A++         A LR    P  + L  GPTGVGKT 
Sbjct: 453 KDLEQSLRSVIFGQDEAVKQLASAIKLSR------AGLRAPEKPIGSFLFSGPTGVGKTE 506

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LAR  G  F++ +++++ E   V R
Sbjct: 507 LAKQLARALGIGFLRFDMSEYQERHTVSR 535


>gi|149064526|gb|EDM14729.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Rattus norvegicus]
          Length = 724

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 326 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 379

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 380 FVGVGPAR-VRDLFALA 395


>gi|149192459|ref|ZP_01870652.1| cell division protein FtsH [Vibrio shilonii AK1]
 gi|148833710|gb|EDL50754.1| cell division protein FtsH [Vibrio shilonii AK1]
          Length = 601

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 114 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 167

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 168 FVGVGASR-VRDMFEQA 183


>gi|147920402|ref|YP_685823.1| proteasome-activating nucleotidase [uncultured methanogenic
           archaeon RC-I]
 gi|110621219|emb|CAJ36497.1| 26S proteasome regulatory subunit (proteasome-activating
           nucleotidase) [uncultured methanogenic archaeon RC-I]
          Length = 410

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT +++ +A  A A FI++  ++     ++G    Q++RDL  +A
Sbjct: 187 PRGVLLYGPPGTGKTLLAKAVAHQANATFIRMSGSELVH-KFIGEGA-QLVRDLFQMA 242


>gi|91775136|ref|YP_544892.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
 gi|91709123|gb|ABE49051.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|53803870|ref|YP_114285.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|53757631|gb|AAU91922.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 187 IPRGALMVGPPGTGKTLLARAIAGEARVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|58697295|ref|ZP_00372662.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536343|gb|EAL59819.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 377

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 79  KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 132

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   I+ +++++ E   + R
Sbjct: 133 LAKQLAESMGMNLIRFDMSEYIESHTISR 161


>gi|332886186|gb|EGK06430.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 283


>gi|330686262|gb|EGG97874.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU121]
          Length = 817

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA  + 
Sbjct: 510 VIGQKDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAESMF 563

Query: 78  GA--PFIKVEVTKFTEIGYVGR 97
           G     I+V++++F E   V R
Sbjct: 564 GEDDAMIRVDMSEFMEKHAVSR 585


>gi|323138621|ref|ZP_08073688.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocystis
           sp. ATCC 49242]
 gi|322396109|gb|EFX98643.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocystis
           sp. ATCC 49242]
          Length = 813

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 22/120 (18%)

Query: 11  EIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVG 65
           E+++ LD    R + GQ  A  A+  A++         A LRD+  P    L  GPTGVG
Sbjct: 461 EVLAHLDETLRRVVYGQDKAISALTSAIKLAR------AGLRDQEKPIGCYLFSGPTGVG 514

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           KT  +R+LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 515 KTEAARQLATSLGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHCV 574


>gi|320168303|gb|EFW45202.1| 26S protease regulatory subunit 6B [Capsaspora owczarzaki ATCC
           30864]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 156 IQKQEMREAVELPLTHHELYKQIGID-----PPRGVLMWGPPGTGKTMLAKAVAHHTTAS 210

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 211 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 238


>gi|315179214|gb|ADT86128.1| cell division protein FtsH [Vibrio furnissii NCTC 11218]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 163 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 216

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 217 FVGVGASR-VRDMFEQA 232


>gi|308095375|ref|ZP_05905382.2| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
 gi|308086280|gb|EFO35975.1| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
          Length = 408

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 175 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 229 FVGVGASR-VRDMFEQA 244


>gi|304437097|ref|ZP_07397060.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370048|gb|EFM23710.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 664

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL + A
Sbjct: 192 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFEQA 248


>gi|291458866|ref|ZP_06598256.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418120|gb|EFE91839.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 689

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 LPKGALLVGPPGTGKTLLAKAVAGEAQVPFYSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|253999579|ref|YP_003051642.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
 gi|253986258|gb|ACT51115.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|163783226|ref|ZP_02178220.1| tryptophan synthase subunit beta [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881560|gb|EDP75070.1| tryptophan synthase subunit beta [Hydrogenivirga sp. 128-5-R1-1]
          Length = 630

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 189 PKGVLLYGDPGVGKTLLAKAIAGEAHVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 244


>gi|163784726|ref|ZP_02179537.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880005|gb|EDP73698.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK IL  G  GVGKT +++ +A  A  PFI +  + F E+ +VG    + +RDL + A
Sbjct: 186 PKGILFYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 241


>gi|155212694|gb|ABT17415.1| bacterio-opsin-associated chaperone [Halorubrum sp. TP009]
          Length = 694

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT ++R  A L+ A FI V   +  +  YVG + EQ +RDL   A
Sbjct: 461 PSGVLLYGPPGTGKTLLARAAASLSDANFIPVNGPELLDK-YVGAS-EQAVRDLFATA 516


>gi|29653454|ref|NP_819146.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 493]
 gi|161830087|ref|YP_001596062.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 331]
 gi|212213377|ref|YP_002304313.1| ClpB [Coxiella burnetii CbuG_Q212]
 gi|54035826|sp|Q83F55|CLPB_COXBU RecName: Full=Chaperone protein ClpB
 gi|29540716|gb|AAO89660.1| ClpB [Coxiella burnetii RSA 493]
 gi|161761954|gb|ABX77596.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 331]
 gi|212011787|gb|ACJ19168.1| ClpB [Coxiella burnetii CbuG_Q212]
          Length = 859

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 566 TELHKRVIGQDEAVNAVANAIR-RSR-----AGLSDPNRPVGSFLFLGPTGVGKTELCKA 619

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 620 LAVFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|312077930|ref|XP_003141517.1| fidgetin protein [Loa loa]
 gi|307763321|gb|EFO22555.1| fidgetin protein [Loa loa]
          Length = 558

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   +VG   E+++R L  +A
Sbjct: 313 PKGVLLFGPPGTGKTMIGRCVASQCKATFFNIAASSITS-KWVGEG-EKLVRALFAIA 368


>gi|307545651|ref|YP_003898130.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Halomonas
           elongata DSM 2581]
 gi|307217675|emb|CBV42945.1| K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
           [Halomonas elongata DSM 2581]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S R+++  LDR     + GQ +A  +++ A++         A L+    P  + L  GPT
Sbjct: 450 SDRKLLENLDRDLKMLVFGQDEAIDSLSAAIKLSR------AGLKSPDKPVGSFLFAGPT 503

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++R+LA + G   ++ +++++ E   V R
Sbjct: 504 GVGKTEVARQLAHIMGIDLVRFDMSEYMERHTVSR 538


>gi|269961974|ref|ZP_06176329.1| cell division protein FtsH [Vibrio harveyi 1DA3]
 gi|269833297|gb|EEZ87401.1| cell division protein FtsH [Vibrio harveyi 1DA3]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 193 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 247 FVGVGASR-VRDMFEQA 262


>gi|269103412|ref|ZP_06156109.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163310|gb|EEZ41806.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 226 FVGVGASR-VRDMFEQA 241


>gi|258515243|ref|YP_003191465.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
 gi|257778948|gb|ACV62842.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
          Length = 863

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A RAVA A LR R       A ++D   P  + + +GPTGVGKT ++R 
Sbjct: 567 ELHKRVIGQDEAVRAVADAVLRAR-------AGIKDPNRPIGSFIFLGPTGVGKTELARS 619

Query: 73  LAR 75
           LA+
Sbjct: 620 LAQ 622


>gi|308806005|ref|XP_003080314.1| AAA ATPase, central region:Clp, N terminal:C (ISS) [Ostreococcus
           tauri]
 gi|116058774|emb|CAL54481.1| AAA ATPase, central region:Clp, N terminal:C (ISS) [Ostreococcus
           tauri]
          Length = 839

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A R+++ A+R R R     A L D   P  +I+  GPTGVGKT +++ +
Sbjct: 490 ELGKRVIGQAEAVRSISQAIR-RAR-----AGLADASKPVASIIFSGPTGVGKTELAKAV 543

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    A    ++++++++ E   V R
Sbjct: 544 AQTYFGAEKAMVRIDMSEYMESHSVSR 570


>gi|54020382|ref|YP_115688.1| cell division protein [Mycoplasma hyopneumoniae 232]
 gi|53987555|gb|AAV27756.1| cell division protein [Mycoplasma hyopneumoniae 232]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +P+ ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 261 IPRGILLGGPPGTGKTLLAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 316


>gi|312601163|gb|ADQ90418.1| Cell division protein [Mycoplasma hyopneumoniae 168]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105
           +P+ ILL GP G GKT +++  A  A  PF  +  + F E+ YVG   + V ++ +D
Sbjct: 261 IPRGILLGGPPGTGKTLLAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 316


>gi|309359039|emb|CAP33351.2| CBR-SPG-7 protein [Caenorhabditis briggsae AF16]
          Length = 814

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 339 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFSMA 395


>gi|297815884|ref|XP_002875825.1| hypothetical protein ARALYDRAFT_485083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321663|gb|EFH52084.1| hypothetical protein ARALYDRAFT_485083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 803

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 359 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDL 410


>gi|242279302|ref|YP_002991431.1| ATP-dependent Clp protease ATP-binding protein ClpA [Desulfovibrio
           salexigens DSM 2638]
 gi|242122196|gb|ACS79892.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           salexigens DSM 2638]
          Length = 769

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + LL GPTGVGKT ++R+LA   G  F++ +++++ E   V R
Sbjct: 501 SFLLTGPTGVGKTELARQLASTMGVHFMRFDMSEYMEKHAVAR 543


>gi|254456984|ref|ZP_05070412.1| peptidase M41, FtsH [Campylobacterales bacterium GD 1]
 gi|207085776|gb|EDZ63060.1| peptidase M41, FtsH [Campylobacterales bacterium GD 1]
          Length = 663

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 209 IPKGVLLVGSPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGAAR-VRDLFEQA 265


>gi|194214505|ref|XP_001491415.2| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Equus caballus]
          Length = 857

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 427 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 480

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 481 FVGVGPAR-VRDLFALA 496


>gi|190571197|ref|YP_001975555.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018597|ref|ZP_03334405.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357469|emb|CAQ54903.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995548|gb|EEB56188.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|149195298|ref|ZP_01872386.1| ENDOPEPTIDASE CLP ATP-BINDING CHAIN A [Caminibacter mediatlanticus
           TB-2]
 gi|149134562|gb|EDM23050.1| ENDOPEPTIDASE CLP ATP-BINDING CHAIN A [Caminibacter mediatlanticus
           TB-2]
          Length = 730

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L VGPTGVGKT I+++LA + G  F++ +++++ E   V +
Sbjct: 473 SFLFVGPTGVGKTEIAKQLANILGINFLRFDMSEYQEKHSVAK 515


>gi|75389996|sp|Q83XX3|FTSH_OENOE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|30575367|gb|AAO43575.1| membrane ATPase FtsH [Oenococcus oeni]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPKGVLLEGPPGTGKTLLAKAVAGEAKTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 281


>gi|162605842|ref|XP_001713436.1| 26S proteasome SU [Guillardia theta]
 gi|13794368|gb|AAK39745.1|AF083031_102 26S proteasome SU [Guillardia theta]
          Length = 400

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
             PK ILL GP G GKT I+R +A  +   FI+V  ++  +  IG  GR V +I
Sbjct: 174 FQPKGILLYGPPGTGKTLIARAVAFHSNCSFIRVSGSELVQKYIGEGGRMVREI 227


>gi|88802372|ref|ZP_01117899.1| putative transmembrane AAA-metalloprotease FtsH [Polaribacter
           irgensii 23-P]
 gi|88781230|gb|EAR12408.1| putative transmembrane AAA-metalloprotease FtsH [Polaribacter
           irgensii 23-P]
          Length = 663

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 283


>gi|302838550|ref|XP_002950833.1| hypothetical protein VOLCADRAFT_91205 [Volvox carteri f.
           nagariensis]
 gi|300263950|gb|EFJ48148.1| hypothetical protein VOLCADRAFT_91205 [Volvox carteri f.
           nagariensis]
          Length = 585

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40
           SPRE+V  LD+++IGQ+ AK+ +A+A  N ++R
Sbjct: 104 SPRELVRALDQHVIGQEHAKKVLAVATHNHYKR 136



 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 9/76 (11%)

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYGSINT- 293
           V   GIV++DE DKI A+ S  G  ++R    EGVQ+ LL ++EG+  +V  K G  N  
Sbjct: 311 VAQQGIVYIDEIDKI-AKRSAEGFTITRDVSGEGVQQALLKMLEGTVVNVPEKGGRKNPR 369

Query: 294 -DHILFIASGAFHVSR 308
            D I +   G   V R
Sbjct: 370 GDFIQWWGGGGRLVGR 385


>gi|226471414|emb|CAX70788.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
 gi|226471416|emb|CAX70789.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
 gi|226489466|emb|CAX75877.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
 gi|226489472|emb|CAX75880.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 169 IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 223

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 224 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|225387885|ref|ZP_03757649.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme
           DSM 15981]
 gi|225046012|gb|EEG56258.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme
           DSM 15981]
          Length = 797

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 204 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFYSLSGSDFVEM-FVGVGASR-VRDLFKNA 260


>gi|255537631|ref|XP_002509882.1| ATP binding protein, putative [Ricinus communis]
 gi|223549781|gb|EEF51269.1| ATP binding protein, putative [Ricinus communis]
          Length = 796

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 518 RGILLFGPPGTGKTMMAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 575


>gi|194872115|ref|XP_001972966.1| GG15828 [Drosophila erecta]
 gi|190654749|gb|EDV51992.1| GG15828 [Drosophila erecta]
          Length = 826

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 360 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 416


>gi|146283637|ref|YP_001173790.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
 gi|145571842|gb|ABP80948.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
          Length = 593

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 142 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 198


>gi|119621956|gb|EAX01551.1| AFG3 ATPase family gene 3-like 2 (yeast), isoform CRA_a [Homo
           sapiens]
 gi|119621957|gb|EAX01552.1| AFG3 ATPase family gene 3-like 2 (yeast), isoform CRA_a [Homo
           sapiens]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 289 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 342

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 343 FVGVGPAR-VRDLFALA 358


>gi|47204953|emb|CAF92797.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 259 LKNPQQYQKLGAKI-----PKGAVLSGPPGTGKTLLAKATAGEANVPFISVNGSEFLEM- 312

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    ++  D+  +A
Sbjct: 313 FVGVGPARVGDDMFSMA 329


>gi|328869431|gb|EGG17809.1| putative ATPase [Dictyostelium fasciculatum]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GP G GKT +S+ +A  A A FI V +++    E+G   + +  I +  V  A
Sbjct: 601 PRGILLYGPPGTGKTLLSKAVAYEARASFIVVNISEIVQGEVGESEKMLADIFKRAVQAA 660

Query: 111 INIV 114
            +IV
Sbjct: 661 PSIV 664


>gi|301787469|ref|XP_002929150.1| PREDICTED: AFG3-like protein 2-like [Ailuropoda melanoleuca]
          Length = 846

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 368 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 421

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 422 FVGVGPAR-VRDLFALA 437


>gi|255087098|ref|XP_002505472.1| predicted protein [Micromonas sp. RCC299]
 gi|226520742|gb|ACO66730.1| predicted protein [Micromonas sp. RCC299]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  LLVGP G GKT +++  A  +G PF+ +  + F E+ +VG    + +RDL
Sbjct: 212 IPRGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSR-VRDL 264


>gi|237653311|ref|YP_002889625.1| ATP-dependent chaperone ClpB [Thauera sp. MZ1T]
 gi|237624558|gb|ACR01248.1| ATP-dependent chaperone ClpB [Thauera sp. MZ1T]
          Length = 860

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   ++GQ +A R VA A+R R R     A L DE  P  + L +GPTGVGKT + + L
Sbjct: 567 KLHERVVGQDEAVRLVADAIR-RSR-----AGLSDENRPYGSFLFLGPTGVGKTELCKTL 620

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F E   V R
Sbjct: 621 ANFLFDSEEHLIRIDMSEFMEKHSVAR 647


>gi|195494903|ref|XP_002095038.1| GE22168 [Drosophila yakuba]
 gi|194181139|gb|EDW94750.1| GE22168 [Drosophila yakuba]
          Length = 826

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 360 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 416


>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GP G GKT +++ +A   G  FI+V  T+   +G +    E  IRDL   A
Sbjct: 75  PRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATEL--VGGMSGESESKIRDLFQSA 130


>gi|50119646|ref|YP_048813.1| ATP-dependent metalloprotease [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610172|emb|CAG73612.1| cell division protein [Pectobacterium atrosepticum SCRI1043]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR   R Q+L   +     P  IL+VGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LREPSRFQKLGGKI-----PSGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|313201614|ref|YP_004040272.1| ATP-dependent metalloprotease ftsh [Methylovorus sp. MP688]
 gi|312440930|gb|ADQ85036.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. MP688]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGAAR-VRDMFEQA 242


>gi|312127146|ref|YP_003992020.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777165|gb|ADQ06651.1| ATPase AAA-2 domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 829

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L R ++GQ +A +AVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT ++R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|229496088|ref|ZP_04389810.1| cell division protein FtsH [Porphyromonas endodontalis ATCC 35406]
 gi|229316984|gb|EEN82895.1| cell division protein FtsH [Porphyromonas endodontalis ATCC 35406]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSMSGSDFVEM-FVGVGASR-VRDL 277


>gi|229552620|ref|ZP_04441345.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314012|gb|EEN79985.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
           LMS2-1]
          Length = 754

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 445 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 496

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 497 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 540


>gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
 gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 238


>gi|195442398|ref|XP_002068945.1| GK18042 [Drosophila willistoni]
 gi|194165030|gb|EDW79931.1| GK18042 [Drosophila willistoni]
          Length = 819

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 353 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 409


>gi|218244917|ref|YP_002370288.1| ATPase AAA-2 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218165395|gb|ACK64132.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8801]
          Length = 789

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 10/82 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L   IIGQ++A +AV+ A+R R R       L++   P  + +  GPTGVGKT +++ 
Sbjct: 473 AQLHESIIGQEEAVKAVSRAVR-RAR-----VGLKNPHRPVASFIFAGPTGVGKTELTKA 526

Query: 73  LAR-LAGA--PFIKVEVTKFTE 91
           LAR L G+    I++++++F E
Sbjct: 527 LARYLFGSEEAMIRLDMSEFME 548


>gi|198442897|ref|NP_001128336.1| AFG3-like protein 2 [Rattus norvegicus]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 326 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 379

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 380 FVGVGPAR-VRDLFALA 395


>gi|76818320|ref|YP_335233.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
 gi|76582793|gb|ABA52267.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
          Length = 917

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT +++ +A  AG PF     + F E+ +VG    + +RDL + A
Sbjct: 453 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEM-FVGVGAAR-VRDLFEQA 509


>gi|320590088|gb|EFX02533.1| mitochondrial inner membrane aaa protease [Grosmannia clavigera
           kw1407]
          Length = 958

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 496 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGASR-VRDLFATA 552


>gi|296272249|ref|YP_003654880.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM
           7299]
 gi|296096424|gb|ADG92374.1| ATP-dependent metalloprotease FtsH [Arcobacter nitrofigilis DSM
           7299]
          Length = 688

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A   F+ V  + F E+ +VG    + +RDL + A
Sbjct: 225 IPKGVLLVGPPGTGKTLLAKAVAGEADVEFLSVSGSAFIEM-FVGVGASR-VRDLFEQA 281


>gi|226314018|ref|YP_002773914.1| ATP-dependent CLP protease-like [Brevibacillus brevis NBRC 100599]
 gi|226096968|dbj|BAH45410.1| ATP-dependent CLP protease-like [Brevibacillus brevis NBRC 100599]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 29/106 (27%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-----ILLVGPTGV 64
           + + + L+  +IGQ +A   VA A+R            R  L PKN      L VGPTGV
Sbjct: 416 KNLAAHLEAKVIGQSEAVTQVAKAIRRS----------RAGLKPKNRPIASFLFVGPTGV 465

Query: 65  GKTAISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVG 96
           GKT +S+ LA  L G     I+++++++ E            GYVG
Sbjct: 466 GKTELSKALAEELFGTRDSMIRLDMSEYMEKHSVSKLIGSPPGYVG 511


>gi|156085064|ref|XP_001610015.1| 26s proteasome aaa-ATPase subunit Rpt3 [Babesia bovis T2Bo]
 gi|154797267|gb|EDO06447.1| 26s proteasome aaa-ATPase subunit Rpt3, putative [Babesia bovis]
          Length = 399

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L       Q+  D      P  +LL GP G GKT +++ +A   GA FI
Sbjct: 154 KQEVREAVELPLTCPELYHQIGID-----PPVGVLLYGPPGTGKTMLAKAVAHHTGASFI 208

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 209 RVVGSEFVQ-KYLGEG-PRMVRDIFRLA 234


>gi|309389347|gb|ADO77227.1| ATP-dependent chaperone ClpB [Halanaerobium praevalens DSM 2228]
          Length = 859

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL++ ++GQ DA +AV+ A+R R R       L+D   P  + + +GPTGVGKT +++ L
Sbjct: 571 ELEKRVVGQHDAVKAVSNAIR-RSR-----TGLQDADRPLASFMFMGPTGVGKTELAKTL 624

Query: 74  A 74
           A
Sbjct: 625 A 625


>gi|304394125|ref|ZP_07376048.1| ATP-dependent chaperone protein ClpB [Ahrensia sp. R2A130]
 gi|303293565|gb|EFL87942.1| ATP-dependent chaperone protein ClpB [Ahrensia sp. R2A130]
          Length = 884

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R ++GQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 565 ELARRVVGQGEAVQAVAKAVR-RSR-----AGLQDPNRPMGSFIFLGPTGVGKTELTKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 619 ADYLFDDDSAMVRMDMSEFMEKHSVAR 645


>gi|195328328|ref|XP_002030868.1| GM24348 [Drosophila sechellia]
 gi|194119811|gb|EDW41854.1| GM24348 [Drosophila sechellia]
          Length = 766

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 300 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 356


>gi|161869742|ref|YP_001598909.1| ATP-dependent zinc metallopeptidase [Neisseria meningitidis 053442]
 gi|161595295|gb|ABX72955.1| ATP-dependent zinc metallopeptidase [Neisseria meningitidis 053442]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|149177999|ref|ZP_01856596.1| cell division protein FtsH [Planctomyces maris DSM 8797]
 gi|148843192|gb|EDL57558.1| cell division protein FtsH [Planctomyces maris DSM 8797]
          Length = 664

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT ++R  A  AG PF  +  ++F ++ +VG    + +RDL   A
Sbjct: 231 IPKGVLLMGSPGTGKTLLARATAGEAGVPFYSINGSEFIQM-FVGVGASR-VRDLFRTA 287


>gi|125980157|ref|XP_001354111.1| GA19652 [Drosophila pseudoobscura pseudoobscura]
 gi|195171042|ref|XP_002026320.1| GL24707 [Drosophila persimilis]
 gi|54641099|gb|EAL29850.1| GA19652 [Drosophila pseudoobscura pseudoobscura]
 gi|194111215|gb|EDW33258.1| GL24707 [Drosophila persimilis]
          Length = 818

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 353 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 409


>gi|332307114|ref|YP_004434965.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174443|gb|AEE23697.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 IPTGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|312891130|ref|ZP_07750653.1| ATPase AAA-2 domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311296438|gb|EFQ73584.1| ATPase AAA-2 domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 846

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           IIGQ DA + +A A+      Q+  A L+D   P  + + +GPTGVGKT +++ LAR   
Sbjct: 531 IIGQDDAIKKLAKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKELARFMF 584

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
                 I+++++++ E   V R V
Sbjct: 585 DTEDALIQIDMSEYMEKFAVSRLV 608


>gi|302872270|ref|YP_003840906.1| ATPase AAA-2 domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575129|gb|ADL42920.1| ATPase AAA-2 domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L R ++GQ +A +AVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT ++R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|291334189|gb|ADD93856.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
 gi|291336826|gb|ADD96360.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C727]
          Length = 132

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q L  ++     P+ +L+ G  G GKT ++R +A  A  PF  +  + F E+ 
Sbjct: 53  LRDPAKFQNLGGNI-----PRGVLMSGSPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 106

Query: 94  YVGRNVEQIIRDLVDVAINIVR 115
           +VG    + +RD+ + A N++ 
Sbjct: 107 FVGVGASR-VRDMFETAKNMLH 127


>gi|291562571|emb|CBL41387.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SS3/4]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 205 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFYSLSGSDFVEM-FVGVGASR-VRDLFKQA 261


>gi|255081883|ref|XP_002508160.1| predicted protein [Micromonas sp. RCC299]
 gi|226523436|gb|ACO69418.1| predicted protein [Micromonas sp. RCC299]
          Length = 1556

 Score = 41.2 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           M + +LLVG TG GKTA+ ++LAR+ GAP   V ++  +E
Sbjct: 307 MTEPVLLVGETGTGKTALVQQLARVTGAPLTVVNLSNQSE 346



 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 22   GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
            G     + ++  L     R+     LR   +PK ILL G  GVGKT++   LA+ AG   
Sbjct: 1349 GSATTPKTMSFELSAPSTRRNAARLLRAMQLPKPILLEGSPGVGKTSLVSALAKAAGHNL 1408

Query: 82   IKVEVTKFTEI 92
            +++ +++ T++
Sbjct: 1409 VRINLSEQTDM 1419


>gi|218288465|ref|ZP_03492755.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241438|gb|EED08612.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           ++L   +IGQ +A R VA A+R R R       LR    P  + L VGPTGVGKT ++RR
Sbjct: 376 ADLAAVVIGQDEAVRQVARAIR-RSR-----VGLRKGDRPIGSFLFVGPTGVGKTEMARR 429

Query: 73  LAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           LA  L G+    I+++++++ E        +  +  L+      V   +  ++ EQ   +
Sbjct: 430 LAEILFGSKDAMIRLDMSEYME--------KHSVSKLIGAPPGYVGYEQAGQLTEQVRRH 481

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
               IL   + K A  + + +F + + DG ++D +
Sbjct: 482 PYSLILVDEIEK-AHPDVQHIFLQIMEDGRLTDSQ 515


>gi|219112797|ref|XP_002185982.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582832|gb|ACI65452.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 256

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           P  +LL GP G GKT ++R  A  AG P +    + F E+ +VGR   ++
Sbjct: 45  PTGLLLEGPPGTGKTMLARATAASAGVPLLYCSGSDFVEM-FVGRGAARV 93


>gi|195016134|ref|XP_001984347.1| GH15066 [Drosophila grimshawi]
 gi|193897829|gb|EDV96695.1| GH15066 [Drosophila grimshawi]
          Length = 813

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 346 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 402


>gi|163750818|ref|ZP_02158053.1| cell division protein FtsH [Shewanella benthica KT99]
 gi|161329513|gb|EDQ00507.1| cell division protein FtsH [Shewanella benthica KT99]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  ILLVGP G GKT +++ ++  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPTGILLVGPPGTGKTLLAKAISGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|150024698|ref|YP_001295524.1| cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
 gi|149771239|emb|CAL42708.1| Cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
          Length = 643

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 278


>gi|327404644|ref|YP_004345482.1| membrane protease FtsH catalytic subunit [Fluviicola taffensis DSM
           16823]
 gi|327320152|gb|AEA44644.1| membrane protease FtsH catalytic subunit [Fluviicola taffensis DSM
           16823]
          Length = 700

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 239 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 291


>gi|224475673|ref|YP_002633279.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420280|emb|CAL27094.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 821

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQKDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V++++F E   V R
Sbjct: 560 ESMFGDEDAMIRVDMSEFMEKHAVSR 585


>gi|195591016|ref|XP_002085240.1| GD12422 [Drosophila simulans]
 gi|194197249|gb|EDX10825.1| GD12422 [Drosophila simulans]
          Length = 826

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 360 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 416


>gi|168033123|ref|XP_001769066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679700|gb|EDQ66144.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+  VG    + IRDL
Sbjct: 455 PHGVLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEV-LVGVGAAR-IRDL 506


>gi|254242052|ref|ZP_04935374.1| hypothetical protein PA2G_02778 [Pseudomonas aeruginosa 2192]
 gi|126195430|gb|EAZ59493.1| hypothetical protein PA2G_02778 [Pseudomonas aeruginosa 2192]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|146310019|ref|YP_001175093.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Enterobacter
           sp. 638]
 gi|167011776|sp|A4W5R2|MIAA_ENT38 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|145316895|gb|ABP59042.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Enterobacter
           sp. 638]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + +  ++G    N E+
Sbjct: 2   SDVSKASLPKAIFLMGPTASGKTALAIELRKVLPVELISVDSALIYQGMDVGTAKPNAEE 61

Query: 102 I------IRDLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
           +      + D++D A      + RRD + E A I A  RI   LVG T
Sbjct: 62  LHAAPHRLLDILDPAQAYSAADFRRDALAEMAEITAAGRI-PLLVGGT 108


>gi|473109|emb|CAA54405.1| amiB [Pseudomonas aeruginosa]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|91773894|ref|YP_566586.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
 gi|91712909|gb|ABE52836.1| AAA-family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLV 59
           +KL    +P +I   + RY++  +D K  +   ++    R+ L    L D      IL+V
Sbjct: 162 LKLVQIIAPEDIAQPM-RYMVLTEDQKEEIEKIVKAIQYREHLKKIGLYD---IGKILMV 217

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           GP G GKT++++ ++     PF++V ++  T+  +G   +N++++ 
Sbjct: 218 GPPGTGKTSVAKAMSERLSIPFVEVRLSMITDQYLGETAKNIDRVF 263


>gi|332974566|gb|EGK11486.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Kingella
           kingae ATCC 23330]
          Length = 757

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ +A  A+  A++       LP     E    + L  GPTGVGKT +
Sbjct: 448 KTLADTLKRKVFGQDNAIEALVSAVKMSRSGLGLP-----EKPIGSFLFSGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA   G P  + +++++ E   V R
Sbjct: 503 AKQLAAELGVPLQRFDMSEYMEAHAVSR 530


>gi|304413392|ref|ZP_07394865.1| ClpB molecular chaperone [Candidatus Regiella insecticola LSR1]
 gi|304284235|gb|EFL92628.1| ClpB molecular chaperone [Candidatus Regiella insecticola LSR1]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAIS 70
           I  EL   +IGQ +A  AV+ A+R R R     A L D+  P  + L +GPTGVGKT + 
Sbjct: 562 IEQELHNRVIGQDEAIEAVSNAIR-RSR-----AGLADDNRPTGSFLFLGPTGVGKTELC 615

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALAVFLFNTDKAMIRIDMSEFMEKHAVSR 645


>gi|302535377|ref|ZP_07287719.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
 gi|302444272|gb|EFL16088.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
          Length = 866

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A RAVA A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 574 ELGRRLIGQTEAVRAVADAVR-RTR-----AGIADPDRPTGSFLFLGPTGVGKTELAKAL 627

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 628 ADFLFDDERAMVRIDMSEYSEKHSVARLV 656


>gi|240115233|ref|ZP_04729295.1| hypothetical protein NgonPID1_03108 [Neisseria gonorrhoeae PID18]
 gi|260440949|ref|ZP_05794765.1| hypothetical protein NgonDG_07686 [Neisseria gonorrhoeae DGI2]
 gi|268600913|ref|ZP_06135080.1| cell division protein FtsH [Neisseria gonorrhoeae PID18]
 gi|291044277|ref|ZP_06569986.1| cell division protein ftsH [Neisseria gonorrhoeae DGI2]
 gi|268585044|gb|EEZ49720.1| cell division protein FtsH [Neisseria gonorrhoeae PID18]
 gi|291011171|gb|EFE03167.1| cell division protein ftsH [Neisseria gonorrhoeae DGI2]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|227878372|ref|ZP_03996327.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256844415|ref|ZP_05549901.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849197|ref|ZP_05554630.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|262047213|ref|ZP_06020171.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|293380362|ref|ZP_06626433.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295692144|ref|YP_003600754.1| cell division protein ftsh [Lactobacillus crispatus ST1]
 gi|312978415|ref|ZP_07790157.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
 gi|227862051|gb|EEJ69615.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256613493|gb|EEU18696.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713973|gb|EEU28961.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|260572458|gb|EEX29020.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|290923045|gb|EFD99976.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295030250|emb|CBL49729.1| Cell division protein FtsH [Lactobacillus crispatus ST1]
 gi|310894758|gb|EFQ43830.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|261378829|ref|ZP_05983402.1| ATP-dependent metalloprotease FtsH [Neisseria cinerea ATCC 14685]
 gi|269144808|gb|EEZ71226.1| ATP-dependent metalloprotease FtsH [Neisseria cinerea ATCC 14685]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|157119195|ref|XP_001653295.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108875430|gb|EAT39655.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 771

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 312 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 368


>gi|268564500|ref|XP_002639128.1| C. briggsae CBR-SPG-7 protein [Caenorhabditis briggsae]
          Length = 779

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 324 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFSMA 380


>gi|119714730|ref|YP_921695.1| ATPase [Nocardioides sp. JS614]
 gi|119535391|gb|ABL80008.1| ATPase AAA-2 domain protein [Nocardioides sp. JS614]
          Length = 861

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A +A++ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 513 ELHKRVIGQEEAVKALSRAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTWLSKTL 566

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 567 AEFLFGDEDALIQLDMSEFGEKHTVSR 593


>gi|308505770|ref|XP_003115068.1| CRE-SPG-7 protein [Caenorhabditis remanei]
 gi|308259250|gb|EFP03203.1| CRE-SPG-7 protein [Caenorhabditis remanei]
          Length = 798

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 328 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFSMA 384


>gi|218890439|ref|YP_002439303.1| putative chaperone [Pseudomonas aeruginosa LESB58]
 gi|218770662|emb|CAW26427.1| probable chaperone [Pseudomonas aeruginosa LESB58]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|222529809|ref|YP_002573691.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456656|gb|ACM60918.1| ATPase AAA-2 domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L R ++GQ +A +AVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT ++R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|164688260|ref|ZP_02212288.1| hypothetical protein CLOBAR_01905 [Clostridium bartlettii DSM
           16795]
 gi|164602673|gb|EDQ96138.1| hypothetical protein CLOBAR_01905 [Clostridium bartlettii DSM
           16795]
          Length = 864

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 12/90 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL   +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELHERVIGQNEAVTAVSNAVIRAR-------AGLKDENKPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LAR    +    I+++++++ E   V R V
Sbjct: 625 LARSLFDSEENIIRIDMSEYMEKHSVSRLV 654


>gi|167521571|ref|XP_001745124.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776738|gb|EDQ90357.1| predicted protein [Monosiga brevicollis MX1]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT I + +A  A + F  +  +  T   +VG   E+++R L  VA
Sbjct: 43  IPKGVLLFGPPGTGKTMIGKAIATEAQSTFFSISASALTS-KWVGEG-EKLVRALFAVA 99


>gi|160937960|ref|ZP_02085318.1| hypothetical protein CLOBOL_02854 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439186|gb|EDP16940.1| hypothetical protein CLOBOL_02854 [Clostridium bolteae ATCC
           BAA-613]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 203 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFYSLSGSDFVEM-FVGVGASR-VRDL 255


>gi|152995051|ref|YP_001339886.1| ATP-dependent metalloprotease FtsH [Marinomonas sp. MWYL1]
 gi|150835975|gb|ABR69951.1| ATP-dependent metalloprotease FtsH [Marinomonas sp. MWYL1]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+ GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGILMCGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|145238254|ref|XP_001391774.1| respiratory chain complexes assembly protein rca1 [Aspergillus
           niger CBS 513.88]
 gi|134076257|emb|CAK39542.1| unnamed protein product [Aspergillus niger]
          Length = 898

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R Q+L A +     P+  +L GP G GKT +++  A  +G PF  V  ++F E+ 
Sbjct: 435 LKNPERFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM- 488

Query: 94  YVGRNVEQIIRDL 106
           +VG    + +RDL
Sbjct: 489 FVGVGPSR-VRDL 500


>gi|124485450|ref|YP_001030066.1| methyltransferase type 11 [Methanocorpusculum labreanum Z]
 gi|124362991|gb|ABN06799.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 826

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G +DA R V  ++     R+++ A L     PK +LL GP G GKT I++ +A  +GA
Sbjct: 482 IGGSRDAVRDVRESVEFPLTRKEVFAQLGIR-PPKGVLLYGPPGTGKTMIAKAVAHESGA 540

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            FI V+  +     +VG + E+ +RD+   A
Sbjct: 541 NFIAVKGPELLS-KWVGES-EKAVRDIFKKA 569



 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           PK +LL GP G GKT I++ +A  +GA FI +   +     Y G + EQ +R++
Sbjct: 213 PKGVLLYGPPGTGKTLIAKAVANESGAHFISIAGPEIIS-KYYGES-EQKLREI 264


>gi|71994521|ref|NP_491165.2| human SPG (spastic paraplegia) family member (spg-7)
           [Caenorhabditis elegans]
 gi|31746566|gb|AAF60660.2| Human spg (spastic paraplegia) protein 7, partially confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 782

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 325 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFSMA 381


>gi|28574878|ref|NP_730248.2| CG6512, isoform A [Drosophila melanogaster]
 gi|19527645|gb|AAL89937.1| SD01613p [Drosophila melanogaster]
 gi|28380489|gb|AAF49365.2| CG6512, isoform A [Drosophila melanogaster]
 gi|220947456|gb|ACL86271.1| CG6512-PA [synthetic construct]
          Length = 826

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 360 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 416


>gi|331269758|ref|YP_004396250.1| ATPase AAA-2 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329126308|gb|AEB76253.1| ATPase AAA-2 domain protein [Clostridium botulinum BKT015925]
          Length = 869

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 575 ELKKRVIGQDEATVAVSNAVIRAR-------AGLKDERRPIGSFIFLGPTGVGKTELAKT 627

Query: 73  LAR 75
           LAR
Sbjct: 628 LAR 630


>gi|325959942|ref|YP_004291408.1| proteasome-activating nucleotidase [Methanobacterium sp. AL-21]
 gi|325331374|gb|ADZ10436.1| Proteasome-activating nucleotidase [Methanobacterium sp. AL-21]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FIK+  ++F +  Y+G    +++R + ++A
Sbjct: 185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVK-KYIGEGA-RLVRGVFELA 240


>gi|325200518|gb|ADY95973.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis H44/76]
          Length = 642

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 179 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 235


>gi|312621967|ref|YP_004023580.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202434|gb|ADQ45761.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L R ++GQ +A +AVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT ++R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|305682339|dbj|BAJ16257.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682345|dbj|BAJ16260.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+                +  +
Sbjct: 29  GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQDFIQV 88

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           +T ++LFI  GAF            Q        +KS +  D+  IL + E++
Sbjct: 89  DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEAD 141


>gi|262277127|ref|ZP_06054920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [alpha
           proteobacterium HIMB114]
 gi|262224230|gb|EEY74689.1| ATP-dependent Clp protease ATP-binding subunit ClpA [alpha
           proteobacterium HIMB114]
          Length = 763

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 16/98 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R I GQ  A  A+  +++      + P     E    N L  GPTGVGKT +
Sbjct: 453 KDLDKNLKRLIYGQDHAVDALCSSIKLSRSGLRNP-----EKTIGNYLFNGPTGVGKTEL 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           +++L++  G   ++ ++++F+E            GYVG
Sbjct: 508 AKQLSKTLGVELVRFDMSEFSEKHTISKLIGSPPGYVG 545


>gi|260599481|ref|YP_003212052.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Cronobacter
           turicensis z3032]
 gi|260218658|emb|CBA33987.1| tRNA Delta(2)-isopentenylpyrophosphate transferase [Cronobacter
           turicensis z3032]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQI------ 102
           +PK I L+GPT  GKTA++ RL +      I V+   V K  +IG    +  ++      
Sbjct: 9   LPKAIFLMGPTASGKTALAIRLRQTLPVELISVDSALVYKGMDIGTAKPDAHELSQAPHR 68

Query: 103 IRDLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
           + D++D A      + RRD ++E A I A  RI   LVG T
Sbjct: 69  LLDIIDPAQAYSAADFRRDALKEMADIVAAGRI-PLLVGGT 108


>gi|254670624|emb|CBA06619.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|194098118|ref|YP_002001166.1| cell division protein FtsH [Neisseria gonorrhoeae NCCP11945]
 gi|239998574|ref|ZP_04718498.1| cell division protein FtsH [Neisseria gonorrhoeae 35/02]
 gi|240013699|ref|ZP_04720612.1| cell division protein FtsH [Neisseria gonorrhoeae DGI18]
 gi|240016139|ref|ZP_04722679.1| cell division protein FtsH [Neisseria gonorrhoeae FA6140]
 gi|240117520|ref|ZP_04731582.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|240120768|ref|ZP_04733730.1| cell division protein FtsH [Neisseria gonorrhoeae PID24-1]
 gi|240125326|ref|ZP_04738212.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
 gi|268594433|ref|ZP_06128600.1| cell division protein ftsH [Neisseria gonorrhoeae 35/02]
 gi|268603219|ref|ZP_06137386.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|268683927|ref|ZP_06150789.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
 gi|193933408|gb|ACF29232.1| cell division protein FtsH [Neisseria gonorrhoeae NCCP11945]
 gi|268547822|gb|EEZ43240.1| cell division protein ftsH [Neisseria gonorrhoeae 35/02]
 gi|268587350|gb|EEZ52026.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|268624211|gb|EEZ56611.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|171318908|ref|ZP_02908041.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
 gi|171095897|gb|EDT40837.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
          Length = 516

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +L+VG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 82  IPKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM-FVGVGAAR-VRDLFEQA 138


>gi|121634591|ref|YP_974836.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis FAM18]
 gi|120866297|emb|CAM10038.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis FAM18]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|14520579|ref|NP_126054.1| TBP-interacting protein TIP49 [Pyrococcus abyssi GE5]
 gi|5457795|emb|CAB49285.1| TBP-interacting protein, TIP49 homolog [Pyrococcus abyssi GE5]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            + +L  K ILLVGPTG GKTAI+  +AR  G 
Sbjct: 39 MVGQIKAREAAGIAVK---------LIKQGKLAGKGILLVGPTGSGKTAIAMGIARELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|332194878|gb|AEE32999.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 620

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 395 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQ-KYIGEGA-RMVRELFQMA 450


>gi|325674654|ref|ZP_08154341.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
 gi|325554240|gb|EGD23915.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL + ++GQ+DA +A+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 503 RRLEDELHQRVVGQEDAVKAIARAVR-RSR-----TGMGDPRRPVGSFLFLGPTGVGKTE 556

Query: 69  ISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96
           +++ LA+ L G  +  +++++++F E            GYVG
Sbjct: 557 LAKALAQSLFGDESKMLRLDMSEFGERHTASRLVGAPPGYVG 598


>gi|227891749|ref|ZP_04009554.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227866408|gb|EEJ73829.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 730

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 11/69 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R++ S L++++IGQ +A   VA ++R NR  + +   P          + L VGPTGVGK
Sbjct: 426 RDLGSSLEKHVIGQDEAVDKVARSIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 477

Query: 67  TAISRRLAR 75
           T  +++LAR
Sbjct: 478 TETAKQLAR 486


>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 199 PKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVD-KYIGESA-RIIREMFGFA 254


>gi|168002938|ref|XP_001754170.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694724|gb|EDQ81071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 958

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+  VG    + IRDL
Sbjct: 452 PHGVLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEV-LVGVGAAR-IRDL 503


>gi|292621865|ref|XP_002664799.1| PREDICTED: caseinolytic peptidase B protein homolog, partial [Danio
           rerio]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 27/101 (26%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   VA A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 54  LKEHIIGQEGAINTVASAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 104

Query: 73  LARLAGAP----FIKVEVTKFTE-----------IGYVGRN 98
           +AR         FI++++++F E            GYVG +
Sbjct: 105 VARYMHKDIKKGFIRMDMSEFQEKHEVAKFIGSPPGYVGHD 145


>gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 760

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 21/141 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP GVGKT ++R LA   GA F+ +     ++KF   G   + + +I  D   
Sbjct: 218 PKGVLLYGPPGVGKTLLARALANEIGAYFVTINGPEIMSKF--YGESEQRLREIFDDADK 275

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE+ +   E+R+       +D + G+        +N  +   +
Sbjct: 276 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPDAVDQ 335

Query: 154 KLRDGEISDKEIDIEVADTSS 174
            LR     D+EI+I   DT +
Sbjct: 336 ALRRPGRFDREIEIRPPDTKA 356



 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT +++ +A  +GA FI V
Sbjct: 495 PKGVLLFGPPGTGKTMLAKAVATESGANFIAV 526


>gi|23009988|ref|ZP_00050835.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 445

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 310 KNLTENLKRVVYGQTNAIEALTSAIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTE 363

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 364 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 420


>gi|325131969|gb|EGC54668.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M6190]
 gi|325135980|gb|EGC58590.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M0579]
 gi|325137800|gb|EGC60375.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ES14902]
 gi|325202407|gb|ADY97861.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240149]
 gi|325207841|gb|ADZ03293.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           NZ-05/33]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|320160812|ref|YP_004174036.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
 gi|319994665|dbj|BAJ63436.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
          Length = 861

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + ++GQ +A RAV+ A+R R R     A L+D   P  + + +GPTGVGKT +
Sbjct: 562 EMEERLHQRVVGQDEAVRAVSNAIR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I+++++++ E   V R
Sbjct: 616 ARALAEFMFDDEHAMIRIDMSEYQEKHTVSR 646


>gi|316968737|gb|EFV52972.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 788

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 324 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFSMA 380


>gi|315605809|ref|ZP_07880841.1| chaperone protein ClpB [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312507|gb|EFU60592.1| chaperone protein ClpB [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 870

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ++A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ L
Sbjct: 575 ELAKRLIGQKEAVRAVSDAVR-RSR-----AGLADPNRPTGSFLFLGPTGVGKTELAKSL 628

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 629 AEFLFDDERAIVRIDMSEYSEKHSVARLV 657


>gi|292491563|ref|YP_003527002.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291580158|gb|ADE14615.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           MP N++  GP G+GKT ++RR+A+  G P + V  T   ++  +   + Q ++
Sbjct: 316 MPINLMFSGPGGLGKTELARRVAKALGLPLVDVPATTVRDVDSLLERINQTLQ 368


>gi|302413804|ref|XP_003004734.1| ATPase family AAA domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261355803|gb|EEY18231.1| ATPase family AAA domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +L  G  G GKT +++ +AR +GA FI + ++  TE  Y   N  +I+R +  +A
Sbjct: 140 PSGVLFYGSPGCGKTMLAKAVARESGASFINLHISTMTEKWYGDSN--KIVRAVFSLA 195


>gi|254882796|ref|ZP_05255506.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294778231|ref|ZP_06743657.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|319644311|ref|ZP_07998805.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
 gi|254835589|gb|EET15898.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294447859|gb|EFG16433.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|317384206|gb|EFV65179.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|167388905|ref|XP_001738738.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165897880|gb|EDR24926.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 505

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK+ V  A+     R  +   LR    PK +LL GP G GKT I + +A  + A
Sbjct: 232 IAGLKSAKKIVQEAVIWPMLRPDIFTGLR--APPKGLLLFGPPGTGKTMIGKAIASQSNA 289

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   ++G   E+++R L  VA
Sbjct: 290 TFFNISASALTS-KWIGEG-EKLVRALFAVA 318


>gi|111610207|gb|ABH11595.1| cell division protein [Lactobacillus helveticus CNRZ32]
 gi|328463466|gb|EGF35117.1| cell division protein [Lactobacillus helveticus MTCC 5463]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|24665814|ref|NP_730250.1| CG6512, isoform B [Drosophila melanogaster]
 gi|23093247|gb|AAN11704.1| CG6512, isoform B [Drosophila melanogaster]
          Length = 697

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 231 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 287


>gi|15676696|ref|NP_273840.1| cell division protein FtsH [Neisseria meningitidis MC58]
 gi|254804676|ref|YP_003082897.1| cell division protein [Neisseria meningitidis alpha14]
 gi|7226031|gb|AAF41211.1| cell division protein FtsH [Neisseria meningitidis MC58]
 gi|254668218|emb|CBA04994.1| cell division protein [Neisseria meningitidis alpha14]
 gi|316983789|gb|EFV62770.1| cell division protease ftsH [Neisseria meningitidis H44/76]
 gi|325129970|gb|EGC52769.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           OX99.30304]
 gi|325140049|gb|EGC62578.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis CU385]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|70606463|ref|YP_255333.1| proteasome-activating nucleotidase [Sulfolobus acidocaldarius DSM
           639]
 gi|29423762|gb|AAO73475.1| putative 26S proteasome regulatory subunit 4 [Sulfolobus
           acidocaldarius]
 gi|68567111|gb|AAY80040.1| protease regulatory protein [Sulfolobus acidocaldarius DSM 639]
          Length = 396

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +I+R++ ++A
Sbjct: 170 PKGVLLYGPPGTGKTMLAKAVAAESNATFIHVVASEFAQ-KFVGEGA-RIVREVFELA 225


>gi|218767916|ref|YP_002342428.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis Z2491]
 gi|304387891|ref|ZP_07370065.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ATCC
           13091]
 gi|121051924|emb|CAM08230.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis Z2491]
 gi|261392835|emb|CAX50416.1| cell division protease FtsH [Neisseria meningitidis 8013]
 gi|304338156|gb|EFM04292.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ATCC
           13091]
 gi|308388984|gb|ADO31304.1| cell division protein FtsH [Neisseria meningitidis alpha710]
 gi|325127925|gb|EGC50828.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis N1568]
 gi|325134057|gb|EGC56712.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M13399]
 gi|325144165|gb|EGC66472.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240013]
 gi|325203883|gb|ADY99336.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240355]
 gi|325206361|gb|ADZ01814.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M04-240196]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 753

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 21/141 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP GVGKT ++R LA   GA F+ +     ++KF   G   + + +I  D   
Sbjct: 211 PKGVLLYGPPGVGKTLLARALANEIGAYFVSINGPEIMSKF--YGESEQRLREIFDDADK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE+ +   E+R+       +D + G+        +N      +
Sbjct: 269 NAPSIIFIDEIDAIAPSREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPNAVDQ 328

Query: 154 KLRDGEISDKEIDIEVADTSS 174
            LR     D+EI+I   DT +
Sbjct: 329 ALRRPGRFDREIEIRPPDTKA 349



 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT +++ +A  +GA FI V
Sbjct: 488 PKGVLLFGPPGTGKTMLAKAVATESGANFIAV 519


>gi|325261043|ref|ZP_08127781.1| Clp protease, ATP-binding subunit ClpC [Clostridium sp. D5]
 gi|324032497|gb|EGB93774.1| Clp protease, ATP-binding subunit ClpC [Clostridium sp. D5]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           I+GQQ A +A+A A+R R R     A +++   P  + L +GPTGVGKT +S+ LA    
Sbjct: 474 IVGQQQAVKAIAKAMR-RGR-----AGIQNPNRPIGSFLFLGPTGVGKTELSKVLAEFMF 527

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
                FI+++++++ E   V + +
Sbjct: 528 DKPDAFIRLDMSEYMEPHSVAKMI 551


>gi|323465809|gb|ADX69496.1| M41 family endopeptidase FtsH [Lactobacillus helveticus H10]
          Length = 726

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 230 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 286


>gi|315037516|ref|YP_004031084.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|312275649|gb|ADQ58289.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|327182812|gb|AEA31259.1| cell division protein [Lactobacillus amylovorus GRL 1118]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|306430643|emb|CBJ17068.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LL GP G GKT +++ LA     PF  V  ++F E+ YVG    ++ +   +  +
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGETSVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118

Query: 112 N 112
           N
Sbjct: 119 N 119


>gi|294787782|ref|ZP_06753026.1| ATP-dependent metalloprotease FtsH [Simonsiella muelleri ATCC
           29453]
 gi|294484075|gb|EFG31758.1| ATP-dependent metalloprotease FtsH [Simonsiella muelleri ATCC
           29453]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|161506860|ref|YP_001576814.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|160347849|gb|ABX26523.1| Cell division protein [Lactobacillus helveticus DPC 4571]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|154494841|ref|ZP_02033846.1| hypothetical protein PARMER_03885 [Parabacteroides merdae ATCC
           43184]
 gi|154085391|gb|EDN84436.1| hypothetical protein PARMER_03885 [Parabacteroides merdae ATCC
           43184]
          Length = 664

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDL 279


>gi|114321124|ref|YP_742807.1| FtsH peptidase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227518|gb|ABI57317.1| membrane protease FtsH catalytic subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 639

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 187 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFSQA 243


>gi|91788713|ref|YP_549665.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
 gi|91697938|gb|ABE44767.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 193 IPRGLLLVGPPGTGKTLLAKGIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 249


>gi|302425218|sp|D4GUJ7|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
           AltName: Full=Proteasomal ATPase 1; AltName:
           Full=Proteasome regulatory ATPase 1; AltName:
           Full=Proteasome regulatory particle 1
 gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
          Length = 406

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 184 PSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 239


>gi|57239194|ref|YP_180330.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579152|ref|YP_197364.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161273|emb|CAH58194.1| ATP-dependent Clp protease, ATP-binding subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417778|emb|CAI26982.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI----------- 92
           A LRD   P  + L  GPTGVGKT ++++LA   G   I+ +++++ E            
Sbjct: 490 AGLRDHRKPLASYLFTGPTGVGKTELAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPP 549

Query: 93  GYVGRNVEQIIRD 105
           GYVG +   ++ D
Sbjct: 550 GYVGYDQGGLLTD 562


>gi|328479468|gb|EGF48739.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
          rhamnosus MTCC 5462]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 11/69 (15%)

Query: 10 REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
          + + S+L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 16 KNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPIG--------SFLFVGPTGVGK 67

Query: 67 TAISRRLAR 75
          T ++++LA+
Sbjct: 68 TELAKQLAK 76


>gi|325198016|gb|ADY93472.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis G2136]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|319410164|emb|CBY90500.1| cell division protease FtsH [Neisseria meningitidis WUE 2594]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 174 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 230


>gi|227502079|ref|ZP_03932128.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium accolens ATCC 49725]
 gi|227077234|gb|EEI15197.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium accolens ATCC 49725]
          Length = 953

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A ++V+ A+R R R     A L+D   P  + +
Sbjct: 517 LKLTEKESSRLLNMEEELHKRIIGQDEAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 570

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 571 FAGPSGVGKTELSKSLA 587


>gi|221129815|ref|XP_002154052.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 382

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL
Sbjct: 203 IPKGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFLEM-FVGVGPAR-VRDL 255


>gi|195125565|ref|XP_002007248.1| GI12834 [Drosophila mojavensis]
 gi|193918857|gb|EDW17724.1| GI12834 [Drosophila mojavensis]
          Length = 815

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 352 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 408


>gi|194761458|ref|XP_001962946.1| GF15688 [Drosophila ananassae]
 gi|190616643|gb|EDV32167.1| GF15688 [Drosophila ananassae]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK     A+    RR  L   +R    P+ +LL GP G GKT I++ +A  A A
Sbjct: 282 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQARA 339

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E++++ L  VA
Sbjct: 340 KFFSINPSTLTS-KWVGE-AEKLVKTLFAVA 368


>gi|188993907|ref|YP_001928159.1| putative transmembrane AAA-metalloprotease FtsH [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593587|dbj|BAG32562.1| putative transmembrane AAA-metalloprotease FtsH [Porphyromonas
           gingivalis ATCC 33277]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSLSGSDFVEM-FVGVGASR-VRDL 277


>gi|154344573|ref|XP_001568228.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065565|emb|CAM43335.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G  D K A+   ++  ++ Q+L +       PK +LL GP G GKT ++R LA+  G  F
Sbjct: 104 GLDDVKDALTEHIKWPFQHQELFSGKTVRSHPKGVLLYGPPGTGKTLLARALAKELGCSF 163

Query: 82  IKVEVTK-FTE-IGYVGRNVEQII 103
           I V     F++ +G   RN   I 
Sbjct: 164 INVNTESIFSKWVGDTERNAAAIF 187


>gi|145550604|ref|XP_001460980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428812|emb|CAK93583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K A+ + L      +Q+  D      P+ +LL GP G GKT I++ +A    A FI
Sbjct: 149 KQEIKEAIELPLSCPELYKQIGID-----PPRGVLLYGPPGTGKTMIAKAVAHHTTASFI 203

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 204 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 229


>gi|16331154|ref|NP_441882.1| ClpB protein [Synechocystis sp. PCC 6803]
 gi|54035750|sp|P74459|CLPB1_SYNY3 RecName: Full=Chaperone protein ClpB 1
 gi|1653648|dbj|BAA18560.1| ClpB protein [Synechocystis sp. PCC 6803]
          Length = 898

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 576 QLEGHLHQRVIGQKEAVAAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPTGVGKTEL 629

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           +R LA     +    ++++++++ E   V R
Sbjct: 630 ARALAGFLFDSEEAMVRIDMSEYMEKHAVSR 660


>gi|87309320|ref|ZP_01091456.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
           marina DSM 3645]
 gi|87287959|gb|EAQ79857.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
           marina DSM 3645]
          Length = 849

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73
           EL R +I Q DA +AV+ A+R R R     + L+D   P    +  GPTGVGKT +++ L
Sbjct: 520 ELHRKVISQHDAIKAVSKAVR-RSR-----SGLKDPKRPTGCFVFAGPTGVGKTLLAKAL 573

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          I+++++++ E   V R
Sbjct: 574 AEFMFGDADALIQIDMSEYMEKHNVSR 600


>gi|58697256|ref|ZP_00372641.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536401|gb|EAL59841.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ D
Sbjct: 186 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFD 240


>gi|328954749|ref|YP_004372082.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
 gi|328455073|gb|AEB06267.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
          Length = 872

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL R +IGQ +A  AVA A+R R R     A L D   P  +   +GPTGVGKT +++ 
Sbjct: 568 SELHRRVIGQDEAVSAVASAVR-RSR-----AGLSDPNRPIGSFFFLGPTGVGKTELAKA 621

Query: 73  LA 74
           LA
Sbjct: 622 LA 623


>gi|325954172|ref|YP_004237832.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
 gi|323436790|gb|ADX67254.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
          Length = 670

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 228 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 280


>gi|260102341|ref|ZP_05752578.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
 gi|260083850|gb|EEW67970.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|295658273|ref|XP_002789698.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb01]
 gi|226283107|gb|EEH38673.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb01]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N       LV+   ++ 
Sbjct: 147 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFSLA 200

Query: 115 RE 116
           R+
Sbjct: 201 RK 202


>gi|241068632|ref|XP_002408492.1| ATPase, putative [Ixodes scapularis]
 gi|215492480|gb|EEC02121.1| ATPase, putative [Ixodes scapularis]
          Length = 257

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
          +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 2  IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFNISGSDFVEM-FVG 45


>gi|213965131|ref|ZP_03393329.1| ATPase family associated with various cellular activities (AAA)
           protein [Corynebacterium amycolatum SK46]
 gi|213952245|gb|EEB63629.1| ATPase family associated with various cellular activities (AAA)
           protein [Corynebacterium amycolatum SK46]
          Length = 910

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ++A  AV+ A+R R R     A L+D   P  + +
Sbjct: 505 FKLTEEESSRLLRMEDELHKRIIGQEEAVSAVSRAIR-RTR-----AGLKDPKRPSGSFI 558

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 559 FAGPSGVGKTELSKALAEF 577


>gi|153813963|ref|ZP_01966631.1| hypothetical protein RUMTOR_00170 [Ruminococcus torques ATCC 27756]
 gi|317501491|ref|ZP_07959689.1| ATPase AAA-2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088037|ref|ZP_08336958.1| hypothetical protein HMPREF1025_00541 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848359|gb|EDK25277.1| hypothetical protein RUMTOR_00170 [Ruminococcus torques ATCC 27756]
 gi|316897120|gb|EFV19193.1| ATPase AAA-2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408993|gb|EGG88452.1| hypothetical protein HMPREF1025_00541 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 814

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L + +IGQ++A +AVA A++ R R       L+D   P  + L +GPTGVGKT 
Sbjct: 502 KKLESVLHQRVIGQEEAVKAVARAVK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTE 555

Query: 69  ISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +S+ LA          I+V+++++ E            GYVG
Sbjct: 556 LSKALAEAMFGNEESMIRVDMSEYMEKHSVSKMIGSPPGYVG 597


>gi|116051380|ref|YP_789787.1| putative chaperone [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388126|ref|ZP_06877601.1| putative chaperone [Pseudomonas aeruginosa PAb1]
 gi|313108715|ref|ZP_07794711.1| putative ATPase with chaperone activity, ATP-binding subunit
           [Pseudomonas aeruginosa 39016]
 gi|115586601|gb|ABJ12616.1| putative ATPases with chaperone activity, ATP-binding subunit
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310881213|gb|EFQ39807.1| putative ATPase with chaperone activity, ATP-binding subunit
           [Pseudomonas aeruginosa 39016]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|114672123|ref|XP_001171770.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 2 [Pan
           troglodytes]
          Length = 772

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 302 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 355

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 356 FVGVGPAR-VRDLFALA 371


>gi|90961363|ref|YP_535279.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
 gi|90820557|gb|ABD99196.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
          Length = 730

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 11/69 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R++ S L++++IGQ +A   VA ++R NR  + +   P          + L VGPTGVGK
Sbjct: 426 RDLGSSLEKHVIGQDEAVDKVARSIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 477

Query: 67  TAISRRLAR 75
           T  +++LAR
Sbjct: 478 TETAKQLAR 486


>gi|58617205|ref|YP_196404.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
 gi|58416817|emb|CAI27930.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A LRD   P  + L  GPTGVGKT ++++LA   G   I+ +++++ E
Sbjct: 490 AGLRDHRKPLASYLFTGPTGVGKTELAKQLANHMGMKLIRFDMSEYME 537


>gi|15894246|ref|NP_347595.1| ABC transporter ATPase [Clostridium acetobutylicum ATCC 824]
 gi|54035886|sp|Q97KG0|CLPB_CLOAB RecName: Full=Chaperone protein ClpB
 gi|15023863|gb|AAK78935.1|AE007611_3 ATPase with chaperone activity, two ATP-binding domains
           [Clostridium acetobutylicum ATCC 824]
 gi|325508374|gb|ADZ20010.1| ATPase with chaperone activity, two ATP-binding domains
           [Clostridium acetobutylicum EA 2018]
          Length = 865

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 12/88 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL++ ++GQ +A ++VA A +R R       A L+D   P  + + +GPTGVGKT +++ 
Sbjct: 571 ELEKRVVGQTEAVKSVADAVIRAR-------AGLKDMSKPIGSFIFLGPTGVGKTELAKT 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LAR+   +    I+++++++ E   V R
Sbjct: 624 LARVMFDSEDNIIRIDMSEYMEKYSVSR 651


>gi|154248456|ref|YP_001419414.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xanthobacter
           autotrophicus Py2]
 gi|154162541|gb|ABS69757.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xanthobacter
           autotrophicus Py2]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R + GQ  A  A+A +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 462 TTLKRVVYGQDKAIDALAASIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQ 515

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA + G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 LASVLGVQLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQNPHCV 568


>gi|327284728|ref|XP_003227088.1| PREDICTED: ATPase family AAA domain-containing protein 1-A-like
           [Anolis carolinensis]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P+ +LL GP G GKT +++ +A+ +G  FI ++ +  T+  Y
Sbjct: 130 PRGVLLYGPPGCGKTLLAKAIAQASGCRFINLQASTLTDKWY 171


>gi|326917424|ref|XP_003204999.1| PREDICTED: AFG3-like protein 2-like [Meleagris gallopavo]
          Length = 775

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 310 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDLFALA 366


>gi|325955980|ref|YP_004286590.1| cell division protein [Lactobacillus acidophilus 30SC]
 gi|325332545|gb|ADZ06453.1| cell division protein [Lactobacillus acidophilus 30SC]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNNA 281


>gi|317163848|gb|ADV07389.1| hypothetical protein NGTW08_0417 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 642

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 179 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 235


>gi|313668722|ref|YP_004049006.1| ATP-dependent zinc metallopeptidase [Neisseria lactamica ST-640]
 gi|313006184|emb|CBN87646.1| putative ATP-dependent zinc metallopeptidase [Neisseria lactamica
           020-06]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|309379376|emb|CBX21943.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|301301067|ref|ZP_07207227.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300214235|gb|ADJ78651.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius CECT 5713]
 gi|300851337|gb|EFK79061.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 730

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 11/69 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R++ S L++++IGQ +A   VA ++R NR  + +   P          + L VGPTGVGK
Sbjct: 426 RDLGSSLEKHVIGQDEAVDKVARSIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 477

Query: 67  TAISRRLAR 75
           T  +++LAR
Sbjct: 478 TETAKQLAR 486


>gi|303280900|ref|XP_003059742.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458397|gb|EEH55694.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 651

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  LLVGP G GKT +++  A  +G PF+ +  + F E+ +VG    + +RDL
Sbjct: 224 IPRGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM-FVGVGPSR-VRDL 276


>gi|222422955|dbj|BAH19462.1| AT1G64110 [Arabidopsis thaliana]
          Length = 769

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 613


>gi|222081552|ref|YP_002540916.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221726231|gb|ACM29320.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 870

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ  A RAV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 565 LGKRVVGQAQAVRAVSTAVR-RAR-----AGLQDPSRPIGSFMFLGPTGVGKTELAKALA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 619 EFMFDDETAMVRIDMSEFMEKHSVAR 644


>gi|194748707|ref|XP_001956786.1| GF24400 [Drosophila ananassae]
 gi|190624068|gb|EDV39592.1| GF24400 [Drosophila ananassae]
          Length = 824

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 358 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 414


>gi|114051125|ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus]
 gi|118572819|sp|Q2KJI7|AFG32_BOVIN RecName: Full=AFG3-like protein 2
 gi|86820707|gb|AAI05323.1| AFG3 ATPase family gene 3-like 2 (yeast) [Bos taurus]
 gi|296473687|gb|DAA15802.1| AFG3-like protein 2 [Bos taurus]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 328 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 381

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 382 FVGVGPAR-VRDLFALA 397


>gi|34539920|ref|NP_904399.1| cell division protein FtsH [Porphyromonas gingivalis W83]
 gi|34396231|gb|AAQ65298.1| cell division protein FtsH, putative [Porphyromonas gingivalis W83]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSLSGSDFVEM-FVGVGASR-VRDL 277


>gi|25029085|ref|NP_739139.1| putative endopeptidase Clp ATP-binding chain C [Corynebacterium
           efficiens YS-314]
 gi|259505920|ref|ZP_05748822.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           efficiens YS-314]
 gi|23494372|dbj|BAC19339.1| putative endopeptidase Clp ATP-binding chain C [Corynebacterium
           efficiens YS-314]
 gi|259166401|gb|EEW50955.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           efficiens YS-314]
          Length = 927

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ +A +AV+ A+R R R     A L+D   P  + +
Sbjct: 515 FKLTEAESSRLLNMEEELHKRIIGQDEAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 568

Query: 58  LVGPTGVGKTAISRRLARL 76
             GP+GVGKT +S+ LA  
Sbjct: 569 FAGPSGVGKTELSKALAEF 587


>gi|107102897|ref|ZP_01366815.1| hypothetical protein PaerPA_01003965 [Pseudomonas aeruginosa PACS2]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 40  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 93

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 94  VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 129


>gi|332970373|gb|EGK09365.1| ATP-dependent metalloprotease FtsH [Kingella kingae ATCC 23330]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|323493246|ref|ZP_08098375.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323312512|gb|EGA65647.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 755

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 20/115 (17%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+ +LD      + GQ DA   ++ A++    R  L AD +      + L  GPTG
Sbjct: 446 SDKEILQKLDEKMKMLVFGQDDAIDVLSEAIK--LTRAGLGADHKP---VGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 501 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAV 555


>gi|313675934|ref|YP_004053930.1| membrane protease ftsh catalytic subunit [Marivirga tractuosa DSM
           4126]
 gi|312942632|gb|ADR21822.1| membrane protease FtsH catalytic subunit [Marivirga tractuosa DSM
           4126]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 233 IPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 289


>gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
 gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 238


>gi|261400134|ref|ZP_05986259.1| ATP-dependent metalloprotease FtsH [Neisseria lactamica ATCC 23970]
 gi|269210129|gb|EEZ76584.1| ATP-dependent metalloprotease FtsH [Neisseria lactamica ATCC 23970]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|224372652|ref|YP_002607024.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
 gi|223589193|gb|ACM92929.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
          Length = 720

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           + L VGPTGVGKT I+++LA + G  F++ +++++ E            GYVG
Sbjct: 467 SFLFVGPTGVGKTEIAKQLASILGVNFMRFDMSEYQEKHSVAKLIGSPPGYVG 519


>gi|163751225|ref|ZP_02158453.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           benthica KT99]
 gi|161328939|gb|EDQ00013.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           benthica KT99]
          Length = 752

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 20/113 (17%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           ++++  LDR     + GQ +A  +++ A+R    R  L  + +      + L  GPTGVG
Sbjct: 446 KDMLKNLDRNLKMVVFGQDNAIGSLSAAIR--LSRSGLSGENKP---VGSFLFAGPTGVG 500

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           KT ++ +LA+  G   ++ +++++TE            GYVG +   ++ D V
Sbjct: 501 KTEVTSQLAKCLGLNLVRFDMSEYTESHTVSRLIGAPPGYVGYDQGGLLTDAV 553


>gi|146297365|ref|YP_001181136.1| ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410941|gb|ABP67945.1| ATPase AAA-2 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 830

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIVSE--LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT + S R +  E  L + ++GQ +A RAVA A+R R R       L+D   P  + + 
Sbjct: 497 KLTEDESERLLKLEEVLHKRVVGQDEAVRAVARAIR-RGR-----VGLKDPKRPIGSFIF 550

Query: 59  VGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT + R LA  L G     I+++++++ E            GYVG
Sbjct: 551 LGPTGVGKTELCRALAEALFGTEDALIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|116072766|ref|ZP_01470032.1| ATPase [Synechococcus sp. BL107]
 gi|116064653|gb|EAU70413.1| ATPase [Synechococcus sp. BL107]
          Length = 496

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GK+  ++ +AR    P ++++V +    G VG + E   RD++ +A
Sbjct: 260 LPRGVLLVGPQGTGKSLTAKAIARSWSMPLLRLDVGRLF-AGLVGAS-EARTRDMIQLA 316


>gi|50291931|ref|XP_448398.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527710|emb|CAG61359.1| unnamed protein product [Candida glabrata]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT +++ LA+ +GA FI V ++   +  Y
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISVRMSTIMDKWY 167


>gi|47195116|emb|CAF89391.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 274

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 34/115 (29%)

Query: 55  NILLVGPTG----------------------------VGKTAISRRLARLAGAPFIKVEV 86
           NI+L+GPTG                             GKT   RRLAR    PF   + 
Sbjct: 118 NIILLGPTGSGDGGRRPSASACPGGLSLTTPPHPLTVAGKTCW-RRLARCLDVPFAICDC 176

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILD 136
           T  T+ GYVG ++E +I  L+  A   V ++++     DEV +  S+    ++ D
Sbjct: 177 TTLTQAGYVGEDIESVIAKLLQDANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 231


>gi|319778246|ref|YP_004129159.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Taylorella
           equigenitalis MCE9]
 gi|317108270|gb|ADU91016.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Taylorella
           equigenitalis MCE9]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           + + S+L + I GQ+ A R +  +++ NR       + L     P  + L VGPTGVGKT
Sbjct: 471 KNLYSDLSQLIFGQETAIRKIVDSIKLNR-------SGLGKSSGPIGSFLFVGPTGVGKT 523

Query: 68  AISRRLARLAGAPFIKVEVTKF-TEIG 93
            + ++L+ +     I+ ++T++ TE+G
Sbjct: 524 ELVKKLSEMLSIKLIRFDMTEYNTEMG 550


>gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
 gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ+ AK+ V      L+N  +   L   +     P   LL+GP G GKT +++ +A  
Sbjct: 183 VAGQEGAKQEVEEIVEFLKNPGKYTDLGGKI-----PAGALLIGPPGTGKTLLAKAVAGE 237

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RD+   A
Sbjct: 238 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 269


>gi|300121622|emb|CBK22140.2| unnamed protein product [Blastocystis hominis]
          Length = 262

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  + A F  V  +  T   +VG + E+I+R L  VA
Sbjct: 67  PKGILLFGPPGTGKTMIGKAVATESKALFFSVSSSTLTS-KWVGES-EKIVRALFAVA 122


>gi|218883978|ref|YP_002428360.1| ATPase associated with various cellular activities, AAA_5
          [Desulfurococcus kamchatkensis 1221n]
 gi|218765594|gb|ACL10993.1| ATPase associated with various cellular activities, AAA_5
          [Desulfurococcus kamchatkensis 1221n]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
          +++LL+G  G  K+A++RRLA L  A F K  +T+FTE
Sbjct: 33 EHVLLIGEPGTAKSALARRLADLVKARFFKYMLTRFTE 70


>gi|85057467|ref|YP_456383.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789572|gb|ABC65304.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 702

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           D+L+P+  LL GP G GK+ + + L    G  +I++E ++F +  YVG   E++
Sbjct: 300 DKLIPRGYLLYGPPGTGKSFLIKALCNELGIHYIELEPSRFDKT-YVGEGNEEL 352


>gi|73962221|ref|XP_547682.2| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Canis familiaris]
          Length = 806

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 328 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 381

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 382 FVGVGPAR-VRDLFALA 397


>gi|315654259|ref|ZP_07907167.1| chaperone protein ClpB [Mobiluncus curtisii ATCC 51333]
 gi|315491294|gb|EFU80911.1| chaperone protein ClpB [Mobiluncus curtisii ATCC 51333]
          Length = 918

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L R +IGQ+DA RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ LA
Sbjct: 603 LGRRLIGQKDAVRAVSNAVR-RAR-----AGVSDPNRPTGSFLFLGPTGVGKTELAKALA 656


>gi|313219886|emb|CBY30801.1| unnamed protein product [Oikopleura dioica]
          Length = 432

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+GQ++AK A+  ++    ++ QL   L+     + ILL GP G GKT++ +  A+ A A
Sbjct: 134 IVGQEEAKVALIQSVILPIKQPQLFEGLKQW---RRILLYGPPGTGKTSLVKCTAQAANA 190

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           PF  V  +      Y+G + +++     D   N  +
Sbjct: 191 PFYSVTCSTLLS-PYLGESEKRVREIFSDARANSTK 225


>gi|312372832|gb|EFR20707.1| hypothetical protein AND_19631 [Anopheles darlingi]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 20  IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 76


>gi|307354036|ref|YP_003895087.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307157269|gb|ADN36649.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM
           11571]
          Length = 846

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           QD +  + + +R+    ++L  D      PK +LL GP G GKT I++ +A  +GA FI 
Sbjct: 192 QDVRETIELPMRHPELFRKLGID-----PPKGVLLYGPPGTGKTLIAKAVANESGAHFIS 246

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   +     Y G + EQ +R++ D A
Sbjct: 247 IAGPEVIS-KYYGES-EQRLREIFDEA 271



 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT I++ +A  +GA FI V   +     +G   R V +I R    V+
Sbjct: 526 PRGVLLYGPPGTGKTLIAKAVANESGANFIPVRGPQLLSKWVGESERAVREIFRKARQVS 585

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTAT 144
            +I+     D +       ++  +++++V +  T
Sbjct: 586 PSIIFFDELDSLTPVRGRGSDSHVMESVVNQILT 619


>gi|298368449|ref|ZP_06979767.1| ATP-dependent metalloprotease FtsH [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282452|gb|EFI23939.1| ATP-dependent metalloprotease FtsH [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|296313875|ref|ZP_06863816.1| ATP-dependent metalloprotease FtsH [Neisseria polysaccharea ATCC
           43768]
 gi|296839604|gb|EFH23542.1| ATP-dependent metalloprotease FtsH [Neisseria polysaccharea ATCC
           43768]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|149185295|ref|ZP_01863612.1| ATPase [Erythrobacter sp. SD-21]
 gi|148831406|gb|EDL49840.1| ATPase [Erythrobacter sp. SD-21]
          Length = 795

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 12/82 (14%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A LRD   P  + L  GPTGVGKT ++R+LA + G    + +++++ E            
Sbjct: 490 AGLRDPDKPIGSFLFSGPTGVGKTEVARQLASIMGIELKRFDMSEYMERHSVSRLIGAPP 549

Query: 93  GYVGRNVEQIIRDLVDVAINIV 114
           GYVG +   ++ D +D   + V
Sbjct: 550 GYVGYDQGGLLTDAIDQNPHCV 571


>gi|145348985|ref|XP_001418921.1| chaperone, Hsp100 family, ClpC-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144579151|gb|ABO97214.1| chaperone, Hsp100 family, ClpC-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 781

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A R+++ A+R R R     A L D   P  +I+  GPTGVGKT +++ +
Sbjct: 434 ELGKRVIGQVEAVRSISQAIR-RAR-----AGLADASKPVASIIFSGPTGVGKTELAKAV 487

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    A    ++++++++ E   V R
Sbjct: 488 AQTYFGAEKAMVRIDMSEYMESHSVSR 514


>gi|91762264|ref|ZP_01264229.1| metalloprotease FtsH [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718066|gb|EAS84716.1| metalloprotease FtsH [Candidatus Pelagibacter ubique HTCC1002]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P+  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ +
Sbjct: 185 IPRGCLLVGQPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239


>gi|300192933|ref|NP_006787.2| AFG3-like protein 2 [Homo sapiens]
 gi|126302516|sp|Q9Y4W6|AFG32_HUMAN RecName: Full=AFG3-like protein 2; AltName: Full=Paraplegin-like
           protein
 gi|40675546|gb|AAH65016.1| AFG3 ATPase family gene 3-like 2 (yeast) [Homo sapiens]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 327 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 380

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 381 FVGVGPAR-VRDLFALA 396


>gi|71083306|ref|YP_266025.1| metalloprotease FtsH [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062419|gb|AAZ21422.1| metalloprotease FtsH [Candidatus Pelagibacter ubique HTCC1062]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P+  LLVG  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RD+ +
Sbjct: 185 IPRGCLLVGQPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239


>gi|59800826|ref|YP_207538.1| hypothetical protein NGO0382 [Neisseria gonorrhoeae FA 1090]
 gi|240080281|ref|ZP_04724824.1| hypothetical protein NgonF_03082 [Neisseria gonorrhoeae FA19]
 gi|240112493|ref|ZP_04726983.1| hypothetical protein NgonM_02731 [Neisseria gonorrhoeae MS11]
 gi|240123074|ref|ZP_04736030.1| hypothetical protein NgonP_03881 [Neisseria gonorrhoeae PID332]
 gi|240127778|ref|ZP_04740439.1| hypothetical protein NgonS_03926 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493295|ref|ZP_05106466.1| cell division protein FtsH [Neisseria gonorrhoeae 1291]
 gi|268596429|ref|ZP_06130596.1| cell division protein ftsH [Neisseria gonorrhoeae FA19]
 gi|268598560|ref|ZP_06132727.1| cell division protein FtsH [Neisseria gonorrhoeae MS11]
 gi|268681700|ref|ZP_06148562.1| cell division protein FtsH [Neisseria gonorrhoeae PID332]
 gi|268686170|ref|ZP_06153032.1| cell division protein FtsH [Neisseria gonorrhoeae SK-93-1035]
 gi|293399469|ref|ZP_06643622.1| cell division protease FtsH [Neisseria gonorrhoeae F62]
 gi|59717721|gb|AAW89126.1| putative ATP binding protein, cell division protein [Neisseria
           gonorrhoeae FA 1090]
 gi|226512335|gb|EEH61680.1| cell division protein FtsH [Neisseria gonorrhoeae 1291]
 gi|268550217|gb|EEZ45236.1| cell division protein ftsH [Neisseria gonorrhoeae FA19]
 gi|268582691|gb|EEZ47367.1| cell division protein FtsH [Neisseria gonorrhoeae MS11]
 gi|268621984|gb|EEZ54384.1| cell division protein FtsH [Neisseria gonorrhoeae PID332]
 gi|268626454|gb|EEZ58854.1| cell division protein FtsH [Neisseria gonorrhoeae SK-93-1035]
 gi|291610038|gb|EFF39160.1| cell division protease FtsH [Neisseria gonorrhoeae F62]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|14549664|gb|AAK66971.1|AF329695_1 ATP-dependent zinc metalloprotease [Mus musculus]
 gi|148679800|gb|EDL11747.1| AFG3(ATPase family gene 3)-like 1 (yeast), isoform CRA_b [Mus
           musculus]
          Length = 663

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 193 LKNPKQYQDLGAKI-----PKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 247 FVGVGPAR-VRDMFAMA 262


>gi|15603569|ref|NP_246643.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|54035898|sp|Q9CKC0|CLPB_PASMU RecName: Full=Chaperone protein ClpB
 gi|12722113|gb|AAK03788.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 855

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 564 ELHKRVIGQHEAIEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 617

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 618 ANFLFDDENAMVRIDMSEFMEKHSVSRLV 646


>gi|328873282|gb|EGG21649.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 566

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I++ +A  + A F  +  +  T   YVG   E+++R L  VA
Sbjct: 328 PKGLLLFGPPGNGKTMIAKAVAFESKATFFSISASSLTS-KYVGEG-EKLVRALFGVA 383


>gi|327349649|gb|EGE78506.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 150 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 193


>gi|313205303|ref|YP_004043960.1| ATP-dependent metalloprotease ftsh [Paludibacter propionicigenes
           WB4]
 gi|312444619|gb|ADQ80975.1| ATP-dependent metalloprotease FtsH [Paludibacter propionicigenes
           WB4]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 263 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSMSGSDFVEM-FVGVGASR-VRDL 315


>gi|297243559|ref|ZP_06927490.1| ATP-binding subunits of Clp [Gardnerella vaginalis AMD]
 gi|296888310|gb|EFH27051.1| ATP-binding subunits of Clp [Gardnerella vaginalis AMD]
          Length = 873

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAI 69
           ++ SEL + I+GQ +A  A+A ++R R R       L+D   P  + +  GPTGVGKT +
Sbjct: 512 QMESELHKRIVGQDEAVSALARSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTEL 565

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA          I+V++++F E            GYVG
Sbjct: 566 AKALANFLFDDDNALIRVDMSEFAEKYAASRLFGAPPGYVG 606


>gi|296222181|ref|XP_002757077.1| PREDICTED: AFG3-like protein 2 [Callithrix jacchus]
          Length = 798

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 328 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 381

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 382 FVGVGPAR-VRDLFALA 397


>gi|258545487|ref|ZP_05705721.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
 gi|258519187|gb|EEV88046.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
          Length = 856

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 14  SELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           S L   ++GQ+ A  AVA A+R NR       A L D   P  + L +GPTGVGKT + R
Sbjct: 563 SALGARVVGQETAVEAVANAIRRNR-------AGLSDPNRPIGSFLFLGPTGVGKTELCR 615

Query: 72  RLARL---AGAPFIKVEVTKFTEIGYVGR 97
            LA     +    +++++++F E   V R
Sbjct: 616 TLAAFLFDSDEAMVRIDMSEFMEKHSVAR 644


>gi|257068481|ref|YP_003154736.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
 gi|256559299|gb|ACU85146.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
          Length = 879

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 23/113 (20%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + +IGQ +A +A++ A+R R R     A L+D   P  + +
Sbjct: 493 VKLTEEESSRLLNMEQELHKRVIGQDEAIKAISRAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96
             GPTGVGKT +++ LA  L G     I++++++F E            GYVG
Sbjct: 547 FAGPTGVGKTELAKALAEFLFGDEESLIQLDMSEFGEKHTASRLFGSPPGYVG 599


>gi|261365006|ref|ZP_05977889.1| ATP-dependent metalloprotease FtsH [Neisseria mucosa ATCC 25996]
 gi|288566591|gb|EFC88151.1| ATP-dependent metalloprotease FtsH [Neisseria mucosa ATCC 25996]
          Length = 651

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|242013724|ref|XP_002427552.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
 gi|212511954|gb|EEB14814.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
          Length = 563

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  + + F  +  +  T   +VG + E+++R L  VA
Sbjct: 320 PKGILLFGPPGTGKTLIGKCIASQSNSTFFSISASSLTS-KWVG-DGEKMVRTLFAVA 375


>gi|158286555|ref|XP_308807.4| AGAP006949-PA [Anopheles gambiae str. PEST]
 gi|157020524|gb|EAA04719.4| AGAP006949-PA [Anopheles gambiae str. PEST]
          Length = 821

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 362 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 418


>gi|116070848|ref|ZP_01468117.1| ATPase [Synechococcus sp. BL107]
 gi|116066253|gb|EAU72010.1| ATPase [Synechococcus sp. BL107]
          Length = 862

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L R +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLETDLHRRVIGQDQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLA-RL--AGAPFIKVEVTKFTEIGYVGR 97
           S+ LA RL  +    ++++++++ E   V R
Sbjct: 620 SKALANRLFDSDEAMVRIDMSEYMEKHTVSR 650


>gi|114672121|ref|XP_512199.2| PREDICTED: AFG3-like protein 2 isoform 3 [Pan troglodytes]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 327 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 380

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 381 FVGVGPAR-VRDLFALA 396


>gi|78185355|ref|YP_377790.1| ATPase [Synechococcus sp. CC9902]
 gi|78169649|gb|ABB26746.1| ATPase [Synechococcus sp. CC9902]
          Length = 496

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GK+  ++ +AR    P ++++V +    G VG + E   RD++ +A
Sbjct: 260 LPRGVLLVGPQGTGKSLTAKAIARSWSMPLLRLDVGRLF-AGLVGAS-EARTRDMIQLA 316


>gi|332194877|gb|AEE32998.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 599

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 374 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQ-KYIGEGA-RMVRELFQMA 429


>gi|307182187|gb|EFN69522.1| AFG3-like protein 2 [Camponotus floridanus]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 345 IPKGAMLTGPPGTGKTLLAKATAGEADVPFITVSGSEFLEM-FVGVGPSR-VRDMFSMA 401


>gi|302762194|ref|XP_002964519.1| hypothetical protein SELMODRAFT_166773 [Selaginella moellendorffii]
 gi|300168248|gb|EFJ34852.1| hypothetical protein SELMODRAFT_166773 [Selaginella moellendorffii]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R   +P  ILL G  GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 365 RGSRIPTGILLCGEPGVGKTLLAKAVAGEAGVNFFAISASQFVEI-YVG 412


>gi|283783197|ref|YP_003373951.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
           vaginalis 409-05]
 gi|283441539|gb|ADB14005.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
           vaginalis 409-05]
          Length = 862

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAI 69
           ++ SEL + I+GQ +A  A+A ++R R R       L+D   P  + +  GPTGVGKT +
Sbjct: 512 QMESELHKRIVGQDEAVSALARSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTEL 565

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA          I+V++++F E            GYVG
Sbjct: 566 AKALANFLFDDDNALIRVDMSEFAEKYAASRLFGAPPGYVG 606


>gi|294891603|ref|XP_002773646.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878850|gb|EER05462.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
          Length = 394

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A FIKV  +   +  Y+G +  ++IR++   A
Sbjct: 172 PKGVLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVD-KYIGESA-RVIREMFGYA 227


>gi|261192456|ref|XP_002622635.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239589510|gb|EEQ72153.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           dermatitidis SLH14081]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 150 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 193


>gi|308081970|ref|NP_001183588.1| hypothetical protein LOC100502182 [Zea mays]
 gi|238013264|gb|ACR37667.1| unknown [Zea mays]
          Length = 809

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 417


>gi|196003460|ref|XP_002111597.1| hypothetical protein TRIADDRAFT_50226 [Trichoplax adhaerens]
 gi|190585496|gb|EDV25564.1| hypothetical protein TRIADDRAFT_50226 [Trichoplax adhaerens]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)

Query: 47  LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEI-----GYVGRN 98
           LR++L    +  VGP GVGKT++ R +A+  G  F+++    V+  +EI      Y+G  
Sbjct: 218 LRNDLKGPILCFVGPPGVGKTSVGRSIAKTLGREFLRISLGGVSDQSEIRGHRRTYIGSM 277

Query: 99  VEQIIRDLVDVAIN 112
             +II+ L ++ +N
Sbjct: 278 PGRIIQGLKNIGVN 291


>gi|148677700|gb|EDL09647.1| mCG127904 [Mus musculus]
          Length = 726

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 326 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 379

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 380 FVGVGPAR-VRDLFALA 395


>gi|109121512|ref|XP_001094146.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 2 [Macaca
           mulatta]
          Length = 798

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 341 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDLFALA 397


>gi|19553872|ref|NP_601874.1| ATPase with chaperone activity, ATP-binding subunit
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391515|ref|YP_226917.1| ATP-dependent protease [Corynebacterium glutamicum ATCC 13032]
 gi|21325450|dbj|BAC00072.1| ATPases with chaperone activity, ATP-binding subunit
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326857|emb|CAF20701.1| PROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 925

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ +A +AV+ A+R R R     A L+D   P  + +
Sbjct: 516 FKLTEAESSRLLNMEEELHKRIIGQDEAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 569

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 570 FAGPSGVGKTELSKALA 586


>gi|330038618|ref|XP_003239649.1| 26S protease regulatory SU 7 [Cryptomonas paramecium]
 gi|327206573|gb|AEA38751.1| 26S protease regulatory SU 7 [Cryptomonas paramecium]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 26/135 (19%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK IL+ GP G GKT ++R +A    A FI+V  ++  +  Y+G    +++R+L  ++  
Sbjct: 180 PKGILMFGPPGTGKTLVARAVANRTNACFIRVICSELVQ-KYIGEG-SRLVRELFQLS-- 235

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                     R+ A I   +  LDA+ G             + +DG   D EI   + + 
Sbjct: 236 ---------KRKNACIIFFDE-LDAIGG------------TRFQDGFGGDNEIQRTMLEI 273

Query: 173 SSDISNFDIPGGASV 187
            + +  FD  G   V
Sbjct: 274 VNQLDGFDYRGNVKV 288


>gi|319638317|ref|ZP_07993080.1| cell division protein FtsH [Neisseria mucosa C102]
 gi|317400590|gb|EFV81248.1| cell division protein FtsH [Neisseria mucosa C102]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|319778415|ref|YP_004129328.1| Cell division protein FtsH [Taylorella equigenitalis MCE9]
 gi|317108439|gb|ADU91185.1| Cell division protein FtsH [Taylorella equigenitalis MCE9]
          Length = 592

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 146 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFENA 202


>gi|297702168|ref|XP_002828063.1| PREDICTED: AFG3-like protein 2-like [Pongo abelii]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 327 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 380

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 381 FVGVGPAR-VRDLFALA 396


>gi|298253965|ref|ZP_06977552.1| ATP-binding subunits of Clp [Gardnerella vaginalis 5-1]
 gi|297532108|gb|EFH71083.1| ATP-binding subunits of Clp [Gardnerella vaginalis 5-1]
          Length = 852

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAI 69
           ++ SEL + I+GQ +A  A+A ++R R R       L+D   P  + +  GPTGVGKT +
Sbjct: 501 QMESELHKRIVGQDEAVSALARSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA          I+V++++F E            GYVG
Sbjct: 555 AKALANFLFDDDNALIRVDMSEFAEKYAASRLFGAPPGYVG 595


>gi|297836963|ref|XP_002886363.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332204|gb|EFH62622.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 554 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 611


>gi|315230587|ref|YP_004071023.1| hypothetical protein TERMP_00823 [Thermococcus barophilus MP]
 gi|315183615|gb|ADT83800.1| hypothetical protein TERMP_00823 [Thermococcus barophilus MP]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            R +L  K ILLVGPTG GKTAI+  +A+  G 
Sbjct: 39 MVGQIKAREAAGIAVK---------LIKRGKLAGKGILLVGPTGSGKTAIAIGIAKELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|171913581|ref|ZP_02929051.1| ATP-dependent chaperone protein ClpB [Verrucomicrobium spinosum DSM
           4136]
          Length = 858

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 7/56 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           +IGQ++A +AV+ A+R R R     A L+DE  P  + L +GPTGVGKT +S+ LA
Sbjct: 573 VIGQKNAIKAVSNAVR-RAR-----AGLQDENRPIGSFLFLGPTGVGKTELSKALA 622


>gi|5457357|emb|CAB48398.1| paraplegin-like protein [Homo sapiens]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 327 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 380

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 381 FVGVGPAR-VRDLFALA 396


>gi|331002049|ref|ZP_08325569.1| hypothetical protein HMPREF0491_00431 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411845|gb|EGG91250.1| hypothetical protein HMPREF0491_00431 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 12/104 (11%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           K+T N S R   +   L   ++GQ++A  AVA A+R R R       L+D   P  + L 
Sbjct: 495 KITENDSQRLNNLEKVLHERVVGQEEAVNAVARAIR-RGR-----VGLKDPKRPIGSFLF 548

Query: 59  VGPTGVGKTAISRRLA-RLAGA--PFIKVEVTKFTEIGYVGRNV 99
           +GPTGVGKT +S+ LA  + G+    I+V+++++ E   V + V
Sbjct: 549 LGPTGVGKTELSKALAYSMFGSENALIRVDMSEYMEKHSVSKMV 592


>gi|239615227|gb|EEQ92214.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           dermatitidis ER-3]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
            +LL GP G GKT +++ LA  +GA FI + ++  TE  Y   N
Sbjct: 150 GVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 193


>gi|224008308|ref|XP_002293113.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220971239|gb|EED89574.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 191 PKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVD-KYIGESA-RIIREMFGFA 246


>gi|212693626|ref|ZP_03301754.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|237708786|ref|ZP_04539267.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|237724224|ref|ZP_04554705.1| metalloprotease FtsH [Bacteroides sp. D4]
 gi|265755948|ref|ZP_06090415.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
 gi|212663879|gb|EEB24453.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|229437412|gb|EEO47489.1| metalloprotease FtsH [Bacteroides dorei 5_1_36/D4]
 gi|229457212|gb|EEO62933.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|263234026|gb|EEZ19627.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 222 IPKGALLVGPPGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGASR-VRDL 274


>gi|115703453|ref|XP_001202193.1| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Strongylocentrotus
           purpuratus]
 gi|115752740|ref|XP_798395.2| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Strongylocentrotus
           purpuratus]
          Length = 915

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG 96
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G
Sbjct: 464 VPKGALLLGPPGCGKTLLAKAVATEANVPFLAMAGSEFVEMIGGLG 509


>gi|115534323|ref|NP_500191.3| ParaPleGiN AAA protease family member (ppgn-1) [Caenorhabditis
           elegans]
 gi|109287872|dbj|BAE96353.1| paraplegin [Caenorhabditis elegans]
 gi|116517382|gb|ABJ99062.1| Paraplegin aaa protease family protein 1, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 747

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK   R     L+N  R  +L A L     P+  LL GP G GKT +++ LA  
Sbjct: 287 VAGCSEAKVEIREFVDYLKNPGRFTKLGAKL-----PRGALLTGPPGCGKTLLAKALAAE 341

Query: 77  AGAPFIKVEVTKFTE-IGYVG 96
           +  PFI +  ++F E IG +G
Sbjct: 342 STVPFISMNGSEFVEVIGGLG 362


>gi|30696968|ref|NP_849842.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196075|gb|AEE34196.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 613


>gi|87119798|ref|ZP_01075695.1| cell division protein FtsH [Marinomonas sp. MED121]
 gi|86165274|gb|EAQ66542.1| cell division protein FtsH [Marinomonas sp. MED121]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+ GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPRGILMCGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|115353145|ref|YP_774984.1| ATPase central domain-containing protein [Burkholderia ambifaria
           AMMD]
 gi|115283133|gb|ABI88650.1| AAA ATPase, central domain protein [Burkholderia ambifaria AMMD]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L  +     D ++ VA+ L           D R ELMP  ILL+GP G+GKT  +
Sbjct: 66  ELGDALPNFTEPLDDVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFA 114

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYV 95
           + LA+L G  +  V ++  T  G++
Sbjct: 115 KALAKLLGTAYHYVPMSSLTA-GWI 138


>gi|240254262|ref|NP_175781.4| ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/
           nucleotide binding / peptidyl-prolyl cis-trans isomerase
           [Arabidopsis thaliana]
 gi|332194876|gb|AEE32997.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 598

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 373 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQ-KYIGEGA-RMVRELFQMA 428


>gi|238021384|ref|ZP_04601810.1| hypothetical protein GCWU000324_01283 [Kingella oralis ATCC 51147]
 gi|237868364|gb|EEP69370.1| hypothetical protein GCWU000324_01283 [Kingella oralis ATCC 51147]
          Length = 677

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 190 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 246


>gi|225025121|ref|ZP_03714313.1| hypothetical protein EIKCOROL_02013 [Eikenella corrodens ATCC
           23834]
 gi|224942082|gb|EEG23291.1| hypothetical protein EIKCOROL_02013 [Eikenella corrodens ATCC
           23834]
          Length = 674

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|186492938|ref|NP_001117544.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196077|gb|AEE34198.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 554 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 611


>gi|18999411|gb|AAH24282.1| Similar to AFG3 ATPase family gene 3-like 2 (yeast) [Homo sapiens]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 342 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 395

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 396 FVGVGPAR-VRDLFALA 411


>gi|17065032|gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana]
          Length = 752

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 613


>gi|328870037|gb|EGG18412.1| peptidase M41 [Dictyostelium fasciculatum]
          Length = 853

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  +LVGP G GKT +++  A  +G PF  +  + F E+ 
Sbjct: 389 LKNADKYKKLGAKI-----PKGAILVGPPGTGKTLLAKATAGESGVPFFTISGSDFIEM- 442

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 443 FVGVGPSR-VRDLFKEA 458


>gi|320100587|ref|YP_004176179.1| ATPase [Desulfurococcus mucosus DSM 2162]
 gi|319752939|gb|ADV64697.1| ATPase associated with various cellular activities AAA_5
          [Desulfurococcus mucosus DSM 2162]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 16/80 (20%)

Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
          +VSEL++  +G+ +  R + ++L                +  ++ +L+G  G  K+A++R
Sbjct: 17 LVSELEKPFVGRSEEARLLVLSL----------------ISGEHAILIGEPGTAKSALAR 60

Query: 72 RLARLAGAPFIKVEVTKFTE 91
          RLA L  A F K  +T+FTE
Sbjct: 61 RLADLVKARFFKYLLTRFTE 80


>gi|304391582|ref|ZP_07373524.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ahrensia sp.
           R2A130]
 gi|303295811|gb|EFL90169.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ahrensia sp.
           R2A130]
          Length = 817

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + I  EL R + GQ  A  A++ A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 459 KNINDELKRMVYGQDKAIDALSSAIKLAR------AGLREPNKPIGSYLFSGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           + ++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 513 VVKQLADTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGMLTDGVD 563


>gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 771

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GK+ ++  +A   GA F+K+   +    G  G + EQ +R+L D AI+
Sbjct: 185 PRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVS-GMSGES-EQKLRELFDEAIS 242



 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIR 104
           MP  +LL GP G GKT +++ +A  +GA FI ++  +  +  YVG   R+V Q+ +
Sbjct: 483 MPAGVLLYGPPGCGKTLLAKAIAHESGANFISIKGPELLD-KYVGESERSVRQVFQ 537


>gi|300770524|ref|ZP_07080403.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300763000|gb|EFK59817.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 689

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 236 IPKGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 292


>gi|294932527|ref|XP_002780317.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
 gi|239890239|gb|EER12112.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
          Length = 398

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A FIKV  +   +  Y+G +  ++IR++   A
Sbjct: 176 PKGVLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVD-KYIGESA-RVIREMFGYA 231


>gi|255659404|ref|ZP_05404813.1| negative regulator of genetic competence ClpC/MecB [Mitsuokella
           multacida DSM 20544]
 gi|260848366|gb|EEX68373.1| negative regulator of genetic competence ClpC/MecB [Mitsuokella
           multacida DSM 20544]
          Length = 840

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQQ+A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L+
Sbjct: 512 LTRRVVGQQEAVEAVSKAIR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELAKALS 565

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             L G     I+ +++++ E   V R V
Sbjct: 566 EALFGTEDAIIRFDMSEYMEKYAVSRMV 593


>gi|225075314|ref|ZP_03718513.1| hypothetical protein NEIFLAOT_00317 [Neisseria flavescens
           NRL30031/H210]
 gi|224953489|gb|EEG34698.1| hypothetical protein NEIFLAOT_00317 [Neisseria flavescens
           NRL30031/H210]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|225018922|ref|ZP_03708114.1| hypothetical protein CLOSTMETH_02873 [Clostridium methylpentosum
           DSM 5476]
 gi|224948302|gb|EEG29511.1| hypothetical protein CLOSTMETH_02873 [Clostridium methylpentosum
           DSM 5476]
          Length = 753

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L R IIGQ  A   V+ A+R    + QL    R    P + + VGPTGVGKT + 
Sbjct: 455 ELEETLSRRIIGQDKAVEVVSAAIRRS--KVQLSKRRR----PASFIFVGPTGVGKTELV 508

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           + L+     +  P I+++++++ E   V R V
Sbjct: 509 KVLSEALFDSVEPLIRLDMSEYMEKHAVSRLV 540


>gi|118443072|ref|YP_878374.1| clpB protein [Clostridium novyi NT]
 gi|118133528|gb|ABK60572.1| clpB protein [Clostridium novyi NT]
          Length = 866

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELKKRVIGQDEATVAVSNAVIRAR-------AGLKDERRPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LAR 75
           LAR
Sbjct: 625 LAR 627


>gi|18407974|ref|NP_564824.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|30102500|gb|AAP21168.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|332196076|gb|AEE34197.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 824

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 608


>gi|19074903|ref|NP_586409.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
 gi|19069628|emb|CAD26013.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
          Length = 425

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIG +D K+ +   +     R  L   LR    P+ +LL GP G GKT I + +A    A
Sbjct: 156 IIGLRDVKKTINEIVLWPMLRPDLFTGLRGP--PRGLLLFGPPGTGKTMIGKCIASQCKA 213

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E+++R L  +A
Sbjct: 214 TFFSISASSLTS-KWVGEG-EKMVRALFHLA 242


>gi|242066542|ref|XP_002454560.1| hypothetical protein SORBIDRAFT_04g033360 [Sorghum bicolor]
 gi|241934391|gb|EES07536.1| hypothetical protein SORBIDRAFT_04g033360 [Sorghum bicolor]
          Length = 818

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 375 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 426


>gi|225570736|ref|ZP_03779759.1| hypothetical protein CLOHYLEM_06839 [Clostridium hylemonae DSM
           15053]
 gi|225160198|gb|EEG72817.1| hypothetical protein CLOHYLEM_06839 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A RAV+ A++ R R       L+D   P  + L +GPTGVGKT +S+ L+
Sbjct: 507 LHKRVIGQEEAVRAVSKAIK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALS 560

Query: 75  R-LAG--APFIKVEVTKFTE-----------IGYVGRN 98
             L G     I+V+++++ E            GYVG +
Sbjct: 561 EALFGNEESMIRVDMSEYMEKHSVAKMIGSPPGYVGHD 598


>gi|146100765|ref|XP_001468939.1| hypothetical protein [Leishmania infantum]
 gi|134073308|emb|CAM72034.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322502948|emb|CBZ38032.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G  D K A+   ++  ++ Q+L +       PK +LL GP G GKT ++R LA+  G  F
Sbjct: 104 GLDDVKDALTEHIKWPFQHQELFSGKTVRSHPKGVLLYGPPGTGKTLLARALAKELGCSF 163

Query: 82  IKV 84
           I V
Sbjct: 164 INV 166


>gi|114672125|ref|XP_001171710.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 1 [Pan
           troglodytes]
          Length = 730

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 340 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDLFALA 396


>gi|288559208|sp|Q9SSB4|PRS7B_ARATH RecName: Full=26S protease regulatory subunit 7 homolog B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT1b; AltName:
           Full=26S proteasome subunit 7 homolog B; AltName:
           Full=Regulatory particle triple-A ATPase subunit 1b
          Length = 464

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 239 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQ-KYIGEGA-RMVRELFQMA 294


>gi|74211696|dbj|BAE29204.1| unnamed protein product [Mus musculus]
          Length = 795

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 339 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDLFALA 395


>gi|110625761|ref|NP_081406.1| AFG3-like protein 2 [Mus musculus]
 gi|81914515|sp|Q8JZQ2|AFG32_MOUSE RecName: Full=AFG3-like protein 2
 gi|22478102|gb|AAH36999.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Mus musculus]
 gi|29144877|gb|AAH43056.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Mus musculus]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 326 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM- 379

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 380 FVGVGPAR-VRDLFALA 395


>gi|325265684|ref|ZP_08132373.1| ATP-dependent metalloprotease FtsH [Kingella denitrificans ATCC
           33394]
 gi|324982815|gb|EGC18438.1| ATP-dependent metalloprotease FtsH [Kingella denitrificans ATCC
           33394]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 213 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 269


>gi|306836895|ref|ZP_07469849.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium accolens ATCC 49726]
 gi|304567200|gb|EFM42811.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium accolens ATCC 49726]
          Length = 958

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A ++V+ A+R R R     A L+D   P  + +
Sbjct: 517 LKLTEKESSRLLNMEEELHKRIIGQDEAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 570

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 571 FAGPSGVGKTELSKSLA 587


>gi|300176500|emb|CBK24165.2| unnamed protein product [Blastocystis hominis]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT +++ +A  + A F  V  +  T   +VG + E+I+R L  VA
Sbjct: 29  PKGILLFGPPGTGKTMLAKAVATESNAFFFSVSSSTLTS-KWVGES-EKIVRALFRVA 84


>gi|253577518|ref|ZP_04854831.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843058|gb|EES71093.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 500

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ+ AK+ +  AL    R +++    +  + P K ILL GP G GKT +++  A    
Sbjct: 73  IGGQESAKQELREALDFMVRHEEIS---KFGIRPIKGILLTGPPGTGKTLLAKAAAHYTN 129

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
           A F+    ++F E+ YVG    + IRDL   A    R     E +E A I  +E  ++ +
Sbjct: 130 AVFVAASGSEFVEM-YVGVGASR-IRDLFKEA----RTRAAKENKENAIIFIDE--IEVI 181

Query: 139 VGKTATSNTRE 149
            GK      RE
Sbjct: 182 GGKREGGQQRE 192


>gi|294936741|ref|XP_002781856.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
 gi|239892914|gb|EER13651.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  +G PF  +  + F E+ +VG    + +RDL
Sbjct: 104 IPKGGLLVGPPGTGKTLLAKAVAGESGVPFFSMSGSDFIEM-FVGVGPSR-VRDL 156


>gi|226887623|pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
           Complex With Trna(Phe)
 gi|226887624|pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
           Complex With Trna(Phe)
          Length = 316

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEXADITAAGRI-PLLVGGT 108


>gi|284800044|ref|ZP_05985536.2| ATP-dependent metalloprotease FtsH [Neisseria subflava NJ9703]
 gi|284796222|gb|EFC51569.1| ATP-dependent metalloprotease FtsH [Neisseria subflava NJ9703]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|218263810|ref|ZP_03477786.1| hypothetical protein PRABACTJOHN_03476 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222483|gb|EEC95133.1| hypothetical protein PRABACTJOHN_03476 [Parabacteroides johnsonii
           DSM 18315]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKV---EVTKFTEIGYVGRNVEQIIR 104
           I+L+GPTGVGKT +S R+A   G+P I     ++ K   IG      EQI R
Sbjct: 10  IILLGPTGVGKTELSLRIAEHFGSPIISSDSRQLYKDLPIGTAAPTAEQIAR 61


>gi|242023022|ref|XP_002431935.1| paraplegin, putative [Pediculus humanus corporis]
 gi|212517286|gb|EEB19197.1| paraplegin, putative [Pediculus humanus corporis]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G      +RDL + A
Sbjct: 305 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG---AARVRDLFNEA 361


>gi|198476458|ref|XP_001357371.2| GA18367 [Drosophila pseudoobscura pseudoobscura]
 gi|198137704|gb|EAL34440.2| GA18367 [Drosophila pseudoobscura pseudoobscura]
          Length = 364

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 20/79 (25%)

Query: 24  QDAKRAVAIALRNR--------WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           Q+ K  V + +R+R        WR             P  +LL GP G GKT I++ +A+
Sbjct: 115 QELKETVVLPVRHRELLKQSHLWR------------APMGVLLHGPPGCGKTLIAKAIAK 162

Query: 76  LAGAPFIKVEVTKFTEIGY 94
            AG  FI V++   T+  Y
Sbjct: 163 EAGMRFINVDLAILTDQWY 181


>gi|189235434|ref|XP_001813433.1| PREDICTED: similar to paraplegin [Tribolium castaneum]
 gi|270004289|gb|EFA00737.1| hypothetical protein TcasGA2_TC003619 [Tribolium castaneum]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 31/173 (17%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVGRNVEQIIRDLVDVA 110
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G      +RDL   A
Sbjct: 329 VPKGALLLGPPGCGKTLLAKAVATEANVPFLSMNGSEFIEMIGGLG---AARVRDLFKEA 385

Query: 111 ------------INIVRESRRDEVREQASINAEERILDAL------------VGKTATSN 146
                       I+ V   R  ++ +  +    E+ L+ L            V   A++N
Sbjct: 386 RKRAPCIIYIDEIDAVGRKRSGQLGQGGASGESEQTLNQLLVEMDGMASKESVVMLASTN 445

Query: 147 TREVF-RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
             ++  R  LR G   D+ I I++ D       F++    S+ + N  E +SK
Sbjct: 446 RADILDRALLRPGRF-DRHILIDLPDLEERKQIFEL-HLKSIALENEPEFYSK 496


>gi|160895376|ref|ZP_02076146.1| hypothetical protein CLOL250_02934 [Clostridium sp. L2-50]
 gi|156862947|gb|EDO56378.1| hypothetical protein CLOL250_02934 [Clostridium sp. L2-50]
          Length = 817

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           KLT   S R   +  EL + ++GQ +A  AVA A++ R R       L+D   P  + L 
Sbjct: 494 KLTEQESKRLERLEEELHKRVVGQNEAVDAVAKAIK-RSR-----VGLKDPKRPVGSFLF 547

Query: 59  VGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +GPTGVGKT +S+ LA          I+V+++++ E            GYVG
Sbjct: 548 LGPTGVGKTELSKALAEAVFGSEDALIRVDMSEYMEKHSVSKLIGSPPGYVG 599


>gi|99035121|ref|ZP_01314905.1| hypothetical protein Wendoof_01000251 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 768

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ + GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVVFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA   G   I+ +++++ E   + R
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISR 552


>gi|260906427|ref|ZP_05914749.1| ATPase [Brevibacterium linens BL2]
          Length = 850

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA ++++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESSRLLRMEDELHKRIIGQDDAVKSISRAIR-RTR-----AGLKDPKRPSGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ L+          I +++++++E   V R
Sbjct: 547 FAGPTGVGKTELAKALSEFLFGDEDSLISLDMSEYSEKHTVSR 589


>gi|312793061|ref|YP_004025984.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180201|gb|ADQ40371.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A +AVA A+R R R       L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 513 LHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIFLGPTGVGKTELARALA 566

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G     I+++++++ E            GYVG
Sbjct: 567 EALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|55962538|emb|CAI11460.1| novel protein [Danio rerio]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ AG  FI ++ +  T+  Y
Sbjct: 130 PKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWY 171


>gi|47212474|emb|CAF90270.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 781

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 312 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 365

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 366 FVGVGPAR-VRDLFVMA 381


>gi|119358345|ref|YP_912989.1| ATPase [Chlorobium phaeobacteroides DSM 266]
 gi|119355694|gb|ABL66565.1| ATPase AAA-2 domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL + +IGQ++A  AV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IETELHQRVIGQEEAVTAVSEAVK-RSR-----AGMGDEKKPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RALAEYLFDNEDSMIRIDMSEYMESHTVSRLV 220


>gi|307721647|ref|YP_003892787.1| membrane protease FtsH catalytic subunit [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979740|gb|ADN09775.1| membrane protease FtsH catalytic subunit [Sulfurimonas autotrophica
           DSM 16294]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 208 IPKGVLLVGSPGTGKTLLAKAVAGEAEVPFFSVSGSSFIEM-FVGVGAAR-VRDLFEQA 264


>gi|302822974|ref|XP_002993142.1| hypothetical protein SELMODRAFT_236685 [Selaginella moellendorffii]
 gi|300139033|gb|EFJ05782.1| hypothetical protein SELMODRAFT_236685 [Selaginella moellendorffii]
          Length = 772

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R   +P  ILL G  GVGKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 348 RGSRIPTGILLCGEPGVGKTLLAKAVAGEAGVNFFAISASQFVEI-YVG 395


>gi|241758851|ref|ZP_04756964.1| cell division protein FtsH [Neisseria flavescens SK114]
 gi|241321059|gb|EER57272.1| cell division protein FtsH [Neisseria flavescens SK114]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|187776991|ref|ZP_02993464.1| hypothetical protein CLOSPO_00536 [Clostridium sporogenes ATCC
           15579]
 gi|187773919|gb|EDU37721.1| hypothetical protein CLOSPO_00536 [Clostridium sporogenes ATCC
           15579]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|170760038|ref|YP_001785740.1| ATP-dependent metalloprotease [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407027|gb|ACA55438.1| ATP-dependent metalloprotease [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|107099795|ref|ZP_01363713.1| hypothetical protein PaerPA_01000813 [Pseudomonas aeruginosa PACS2]
          Length = 849

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            EL R +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 559 QELHRRVIGQDEAVVAVSNAVR-RSR-----AGLADPNRPSGSFLFLGPTGVGKTELCKA 612

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 613 LAEFLFDTEEALVRIDMSEFMEKHSVAR 640


>gi|89099328|ref|ZP_01172205.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. NRRL B-14911]
 gi|89085937|gb|EAR65061.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. NRRL B-14911]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT +++ LA
Sbjct: 417 LSEKVIGQEEAVKKVAKAVR-RSR-----AGLKSKNRPIGSFLFVGPTGVGKTELTKTLA 470

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVGRN 98
             L G+    I+++++++ E            GYVG +
Sbjct: 471 EELFGSKDSMIRLDMSEYMEKHSISKIIGSPPGYVGHD 508


>gi|322804680|emb|CBZ02232.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|307132185|ref|YP_003884201.1| ClpB protein [Dickeya dadantii 3937]
 gi|306529714|gb|ADM99644.1| ClpB protein [Dickeya dadantii 3937]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA    N  RR +  A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVA----NSIRRSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|300864313|ref|ZP_07109191.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
 gi|300337702|emb|CBN54337.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
          Length = 904

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +
Sbjct: 589 QLEKHLHQRVIGQHEAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 642

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          ++++++++ E   V R V
Sbjct: 643 ARALAEFLFDTDDAIVRIDMSEYMEKHSVSRLV 675


>gi|302867188|ref|YP_003835825.1| AAA ATPase central domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570047|gb|ADL46249.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 17/85 (20%)

Query: 28  RAVAIALRN-----RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           R VA++ R+     RW  ++          P+ IL+ GP G GKT ++R LA   GA F+
Sbjct: 238 REVAVSFRHPQAMARWGARR----------PQGILMYGPPGTGKTMLARALANEVGADFV 287

Query: 83  KVEVTKFTE--IGYVGRNVEQIIRD 105
           ++   +  +  +G   RN+++I R+
Sbjct: 288 EIRTPEILDKYLGGSERNIKRIFRE 312


>gi|168181267|ref|ZP_02615931.1| cell division protease FtsH [Clostridium botulinum Bf]
 gi|237793722|ref|YP_002861274.1| ATP-dependent metalloprotease [Clostridium botulinum Ba4 str. 657]
 gi|182675342|gb|EDT87303.1| cell division protease FtsH [Clostridium botulinum Bf]
 gi|229262151|gb|ACQ53184.1| ATP-dependent metalloprotease [Clostridium botulinum Ba4 str. 657]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|74212425|dbj|BAE30959.1| unnamed protein product [Mus musculus]
 gi|74220457|dbj|BAE31449.1| unnamed protein product [Mus musculus]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 339 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDLFALA 395


>gi|186683260|ref|YP_001866456.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186465712|gb|ACC81513.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A RAVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 579 ELHKRVIGQDEAVRAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELAKAL 632

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          ++++++++ E   V R
Sbjct: 633 AEYLFDTEDALVRIDMSEYMEKHAVAR 659


>gi|327438243|dbj|BAK14608.1| ATPase with chaperone activity, ATP-binding subunit [Solibacillus
           silvestris StLB046]
          Length = 814

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  A++ A+R R R     A L+D   P  + + +GPTGVGKT ++R L
Sbjct: 507 ELHKRVVGQGEAVEAISRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARAL 560

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A +        I+V+++++ E            GYVG
Sbjct: 561 AEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYVG 597


>gi|320102257|ref|YP_004177848.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
 gi|319749539|gb|ADV61299.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
          Length = 883

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S RE +  L+R+    ++GQ DA  AVA A+R R R     A+L+D   P  + L +GPT
Sbjct: 578 SEREKLINLERHLHQRVVGQDDAVEAVANAVR-RSR-----ANLQDPNRPIGSFLFLGPT 631

Query: 63  GVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           GVGKT +++ LA          ++++++++ E   V R
Sbjct: 632 GVGKTELAKALAEFLFDDEQAMVRIDMSEYGERHNVAR 669


>gi|313206338|ref|YP_004045515.1| ATP-dependent chaperone clpb [Riemerella anatipestifer DSM 15868]
 gi|312445654|gb|ADQ82009.1| ATP-dependent chaperone ClpB [Riemerella anatipestifer DSM 15868]
 gi|315023204|gb|EFT36215.1| ClpB protein [Riemerella anatipestifer RA-YM]
 gi|325336218|gb|ADZ12492.1| ATPases with chaperone activity, ATP-binding subunit [Riemerella
           anatipestifer RA-GD]
          Length = 863

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 9/64 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + ++GQ++A  AVA A+R NR       A L DE  P  + L +G TGVGKT +++ 
Sbjct: 561 ELHKRVVGQEEAIEAVANAIRRNR-------AGLNDEKKPIGSFLFLGTTGVGKTELAKA 613

Query: 73  LARL 76
           LA  
Sbjct: 614 LAEF 617


>gi|260653779|dbj|BAI44427.1| ATP-dependent protease ATP-binding subunit [Monochamus
          alternatus]
          Length = 26

 Score = 41.2 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 33 ALRNRWRRQQLPADLRDELMPKNILL 58
          A RNRWRR Q+P  LRDE++ KNIL+
Sbjct: 1  AFRNRWRRNQVPFPLRDEIILKNILM 26


>gi|259501405|ref|ZP_05744307.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|259167154|gb|EEW51649.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 427 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 478

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 479 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 530

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 531 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 589

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ D + ++S
Sbjct: 590 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFDPLSKES 637

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            I++V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 638 LIKIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 670


>gi|215408583|emb|CAR31141.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV 109


>gi|215408581|emb|CAR31140.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV 109


>gi|169623150|ref|XP_001804983.1| hypothetical protein SNOG_14806 [Phaeosphaeria nodorum SN15]
 gi|160704926|gb|EAT77998.2| hypothetical protein SNOG_14806 [Phaeosphaeria nodorum SN15]
          Length = 860

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +      L++  R Q+L A +     P+  +L GP G GKT +++  A  
Sbjct: 396 VAGMDEAKQEIMEFVAFLKDPGRFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 450

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +G PF  V  ++F E+ +VG    + +RDL
Sbjct: 451 SGVPFFSVSGSEFVEM-FVGVGASR-VRDL 478


>gi|114763550|ref|ZP_01442955.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pelagibaca
           bermudensis HTCC2601]
 gi|114543830|gb|EAU46842.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. HTCC2601]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ  A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 564 LHNRVVGQNQAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 617

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 618 EFLFDDDNAMVRIDMSEFMEKHSVAR 643


>gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
 gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
          Length = 738

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           R+  +P+ ILL GP G GKT ISR  A   G PFI++
Sbjct: 195 REIPIPRGILLHGPPGCGKTVISRAFAAELGVPFIEI 231


>gi|50955821|ref|YP_063109.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50952303|gb|AAT90004.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 734

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL R ++GQ+ A +AVA A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 438 SELGRRVVGQRPAAQAVADAVR-RTR-----AGISDPDRPTGSFLFLGPTGVGKTELAKA 491

Query: 73  LA 74
           LA
Sbjct: 492 LA 493


>gi|25083981|gb|AAN72146.1| putative cell division control protein [Arabidopsis thaliana]
          Length = 819

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  IL  GP G GKT ++  +A  AG PF K+  T+   I  V    E+ IR+L   A
Sbjct: 266 PSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEV--ISGVSGASEENIRELFSKA 321


>gi|30678379|ref|NP_186810.2| CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|28201773|sp|Q9SS94|CD48C_ARATH RecName: Full=Cell division control protein 48 homolog C;
           Short=AtCDC48c; AltName: Full=Protein EMBRYO DEFECTIVE
           1354
 gi|22531209|gb|AAM97108.1| putative cell division control protein [Arabidopsis thaliana]
 gi|332640174|gb|AEE73695.1| cell division cycle 48C protein [Arabidopsis thaliana]
          Length = 820

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  IL  GP G GKT ++  +A  AG PF K+  T+   I  V    E+ IR+L   A
Sbjct: 267 PSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEV--ISGVSGASEENIRELFSKA 322


>gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 655

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  +G  F     + F E+ +VG    + +RDL + A
Sbjct: 226 IPRGVLLVGPPGTGKTLLAKAVAGESGVSFFHTSGSDFVEM-FVGMGAAR-VRDLFEQA 282


>gi|312876733|ref|ZP_07736712.1| ATPase AAA-2 domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796464|gb|EFR12814.1| ATPase AAA-2 domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A +AVA A+R R R       L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 513 LHRRVVGQDEAVKAVARAIR-RGR-----VGLKDPKRPIGSFIFLGPTGVGKTELARALA 566

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G     I+++++++ E            GYVG
Sbjct: 567 EALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|307824615|ref|ZP_07654839.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307734269|gb|EFO05122.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 647

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  L++GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 IPRGALMIGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|297846886|ref|XP_002891324.1| hypothetical protein ARALYDRAFT_336830 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337166|gb|EFH67583.1| hypothetical protein ARALYDRAFT_336830 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 697

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI++  ++  +  Y+G    +++R+L  +A
Sbjct: 472 PKGVLCYGPPGTGKTLVARAVANRTGACFIRIIGSELVQ-KYIGEGA-RMVRELFQMA 527


>gi|282896404|ref|ZP_06304425.1| ATPase [Raphidiopsis brookii D9]
 gi|281198692|gb|EFA73572.1| ATPase [Raphidiopsis brookii D9]
          Length = 890

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT ++R LA
Sbjct: 578 LHERVIGQEEAVLAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPTGVGKTELARALA 631

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    ++++++++ E   V R V
Sbjct: 632 QFLFDSEDALVRLDMSEYMEKHSVSRLV 659


>gi|282899553|ref|ZP_06307517.1| ATPase [Cylindrospermopsis raciborskii CS-505]
 gi|281195432|gb|EFA70365.1| ATPase [Cylindrospermopsis raciborskii CS-505]
          Length = 891

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT ++R LA
Sbjct: 578 LHERVIGQEEAVLAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPTGVGKTELARALA 631

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    ++++++++ E   V R V
Sbjct: 632 QFLFDSEDALVRLDMSEYMEKHSVSRLV 659


>gi|228475267|ref|ZP_04059992.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           hominis SK119]
 gi|228270732|gb|EEK12141.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           hominis SK119]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA  + 
Sbjct: 510 VIGQNDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAESMF 563

Query: 78  GA--PFIKVEVTKFTEIGYVGR 97
           G     I+V++++F E   V R
Sbjct: 564 GEEDAMIRVDMSEFMEKHAVSR 585


>gi|254486761|ref|ZP_05099966.1| ATP-dependent chaperone ClpB [Roseobacter sp. GAI101]
 gi|214043630|gb|EEB84268.1| ATP-dependent chaperone ClpB [Roseobacter sp. GAI101]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ  A +AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 563 QLHNRVIGQNQAVKAVANAVR-RAR-----AGLNDEARPLGSFLFLGPTGVGKTELTKAV 616

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 617 AEFLFDDENAMVRIDMSEFMEKHAVSR 643


>gi|294657652|ref|XP_459952.2| DEHA2E14894p [Debaryomyces hansenii CBS767]
 gi|199432850|emb|CAG88198.2| DEHA2E14894p [Debaryomyces hansenii]
          Length = 989

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  V      L+N  + ++L A +     P+  +L GP G GKT I++  A  
Sbjct: 518 VAGMSEAKEEVMEFVKFLKNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATAGE 572

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 573 ADVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 604


>gi|153932914|ref|YP_001382781.1| ATP-dependent metalloprotease [Clostridium botulinum A str. ATCC
           19397]
 gi|153935844|ref|YP_001386332.1| ATP-dependent metalloprotease [Clostridium botulinum A str. Hall]
 gi|152928958|gb|ABS34458.1| ATP-dependent metalloprotease [Clostridium botulinum A str. ATCC
           19397]
 gi|152931758|gb|ABS37257.1| ATP-dependent metalloprotease [Clostridium botulinum A str. Hall]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|91201703|emb|CAJ74763.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 135

 Score = 41.2 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 12/90 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +L   +IGQ++A +AV++A+R +R       ADL +   P  + L +GPTGVGKT +++ 
Sbjct: 23  KLHERVIGQEEAVKAVSLAVRLSR-------ADLCEVSKPIASFLFLGPTGVGKTELAKA 75

Query: 73  LARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           LA +        ++++++++ E   V R +
Sbjct: 76  LAEMVFGDEDAMVRIDMSEYMEKHAVARMI 105


>gi|114565669|ref|YP_752823.1| ATP-dependent metalloprotease FtsH [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336604|gb|ABI67452.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 599

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + V   L+N  +  Q+ A +     P+ +LL G  G GKT +++ +A  
Sbjct: 159 VAGAEEAKEEMQEVVEFLKNPQKFIQIGAKI-----PRGVLLYGAPGTGKTLMAKAVAGE 213

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 214 AGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 245


>gi|326794263|ref|YP_004312083.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
 gi|326545027|gb|ADZ90247.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ IL+ GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGILMAGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|312865755|ref|ZP_07725977.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
 gi|311098630|gb|EFQ56852.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 222 IPTGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 265


>gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 800

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GK+ ++  +A   GA F+K+   +    G  G + EQ +R+L D AI+
Sbjct: 185 PRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVS-GMSGES-EQKLRELFDEAIS 242



 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIR 104
           MP  +LL GP G GKT +++ +A  +GA FI ++  +  +  YVG   R+V Q+ +
Sbjct: 512 MPAGVLLYGPPGCGKTLLAKAIAHESGANFISIKGPELLD-KYVGESERSVRQVFQ 566


>gi|251788635|ref|YP_003003356.1| protein disaggregation chaperone [Dickeya zeae Ech1591]
 gi|247537256|gb|ACT05877.1| ATP-dependent chaperone ClpB [Dickeya zeae Ech1591]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA    N  RR +  A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVA----NSIRRSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|218893637|ref|YP_002442506.1| ClpB protein [Pseudomonas aeruginosa LESB58]
 gi|218773865|emb|CAW29679.1| ClpB protein [Pseudomonas aeruginosa LESB58]
          Length = 854

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            EL R +IGQ +A     +A+ N  RR +  A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHRRVIGQDEA----VVAVSNAVRRSR--AGLADPNRPSGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 618 LAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|260826602|ref|XP_002608254.1| hypothetical protein BRAFLDRAFT_115078 [Branchiostoma floridae]
 gi|229293605|gb|EEN64264.1| hypothetical protein BRAFLDRAFT_115078 [Branchiostoma floridae]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 173 KQEIREAVELPLTHFDLYQQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 227

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 228 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 253


>gi|168177746|ref|ZP_02612410.1| ATP-dependent metalloprotease [Clostridium botulinum NCTC 2916]
 gi|226947633|ref|YP_002802724.1| ATP-dependent metalloprotease [Clostridium botulinum A2 str. Kyoto]
 gi|182670641|gb|EDT82615.1| ATP-dependent metalloprotease [Clostridium botulinum NCTC 2916]
 gi|226844425|gb|ACO87091.1| ATP-dependent metalloprotease [Clostridium botulinum A2 str. Kyoto]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|148239084|ref|YP_001224471.1| chaperone ClpB [Synechococcus sp. WH 7803]
 gi|147847623|emb|CAK23174.1| Chaperone ClpB [Synechococcus sp. WH 7803]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL   ++GQQ A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ 
Sbjct: 422 TELHERVVGQQQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 475

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    ++++++++ E   V R
Sbjct: 476 LAAQLFDSEEAMVRIDMSEYMEKHTVSR 503


>gi|320094723|ref|ZP_08026477.1| chaperone protein ClpB [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978365|gb|EFW09954.1| chaperone protein ClpB [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 870

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +E+ + +IGQ+DA +AV+ A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 574 AEIGKRLIGQKDAVKAVSDAVR-RSR-----AGISDPNRPTGSFLFLGPTGVGKTELAKS 627

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          I++++++++E   V R V
Sbjct: 628 LAEFLFDDERAMIRIDMSEYSEKHAVARLV 657


>gi|301300299|ref|ZP_07206507.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852102|gb|EFK79778.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 702

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +EI   L   +IGQ +A  AVA A+R R R     A   +E  P  + L VGPTGVGKT 
Sbjct: 403 KEIGKRLKGKVIGQDEAVNAVARAIR-RNR-----AGFDEENRPIGSFLFVGPTGVGKTE 456

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 457 LAKQLA 462


>gi|296271367|ref|YP_003653999.1| ATPase AAA-2 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296094154|gb|ADG90106.1| ATPase AAA-2 domain protein [Thermobispora bispora DSM 43833]
          Length = 834

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R   +  EL + IIGQ DA +A++ A+R R R     A L+D   P  + +
Sbjct: 493 FKLTEEESQRLLRMEEELHKRIIGQDDAIKALSRAIR-RTR-----AGLKDPRRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 547 FAGPSGVGKTELSKALA 563


>gi|227539016|ref|ZP_03969065.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241219|gb|EEI91234.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 690

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 236 IPKGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 292


>gi|284993144|ref|YP_003411699.1| ATP-dependent chaperone ClpB [Geodermatophilus obscurus DSM 43160]
 gi|284066390|gb|ADB77328.1| ATP-dependent chaperone ClpB [Geodermatophilus obscurus DSM 43160]
          Length = 861

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R ++GQ DA RAV+ A+R R R     + + D   P  + L +GPTGVGKT +++ L
Sbjct: 566 ELGRRVVGQPDAVRAVSDAVR-RAR-----SGVADPNRPTGSFLFLGPTGVGKTELAKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 620 AEFLFDDERAMVRIDMSEYSEKHSVARLV 648


>gi|152985423|ref|YP_001350513.1| ATP-dependent chaperone ClpB [Pseudomonas aeruginosa PA7]
 gi|150960581|gb|ABR82606.1| ATP-dependent chaperone ClpB [Pseudomonas aeruginosa PA7]
          Length = 854

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            EL R +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHRRVIGQDEAVVAVSNAVR-RSR-----AGLADPNRPSGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 618 LAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|170699634|ref|ZP_02890672.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
 gi|172062000|ref|YP_001809652.1| ATPase central domain-containing protein [Burkholderia ambifaria
           MC40-6]
 gi|170135450|gb|EDT03740.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
 gi|171994517|gb|ACB65436.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAKLLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|21226956|ref|NP_632878.1| cell division cycle protein 48-like protein [Methanosarcina mazei
           Go1]
 gi|20905268|gb|AAM30550.1| Cell division cycle protein 48 homolog [Methanosarcina mazei Go1]
          Length = 428

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
            +L VGP G GKT+++R L+     PF++V+++  T+  +G   +N++++
Sbjct: 212 KLLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRV 261


>gi|15599738|ref|NP_253232.1| ClpB protein [Pseudomonas aeruginosa PAO1]
 gi|116052687|ref|YP_793003.1| clpB protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254238710|ref|ZP_04932033.1| ClpB protein [Pseudomonas aeruginosa C3719]
 gi|296391363|ref|ZP_06880838.1| clpB protein [Pseudomonas aeruginosa PAb1]
 gi|313107187|ref|ZP_07793386.1| clpB protein [Pseudomonas aeruginosa 39016]
 gi|54035903|sp|Q9HVN5|CLPB_PSEAE RecName: Full=Chaperone protein ClpB
 gi|9950786|gb|AAG07930.1|AE004868_1 ClpB protein [Pseudomonas aeruginosa PAO1]
 gi|32423740|gb|AAP81264.1| ClpB [Pseudomonas aeruginosa PA14]
 gi|115587908|gb|ABJ13923.1| clpB protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170641|gb|EAZ56152.1| ClpB protein [Pseudomonas aeruginosa C3719]
 gi|310879888|gb|EFQ38482.1| clpB protein [Pseudomonas aeruginosa 39016]
          Length = 854

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            EL R +IGQ +A     +A+ N  RR +  A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHRRVIGQDEA----VVAVSNAVRRSR--AGLADPNRPSGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          +++++++F E   V R
Sbjct: 618 LAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|332522221|ref|ZP_08398473.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313485|gb|EGJ26470.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 658

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|314937170|ref|ZP_07844517.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655789|gb|EFS19534.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           hominis subsp. hominis C80]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA  + 
Sbjct: 510 VIGQNDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAESMF 563

Query: 78  GA--PFIKVEVTKFTEIGYVGR 97
           G     I+V++++F E   V R
Sbjct: 564 GEEDAMIRVDMSEFMEKHAVSR 585


>gi|313885400|ref|ZP_07819150.1| negative regulator of genetic competence ClpC/MecB [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619130|gb|EFR30569.1| negative regulator of genetic competence ClpC/MecB [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 819

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 10/103 (9%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK+T +     +  EL   +IGQ++A  +V+ A+R  +      + L++   P  + L +
Sbjct: 502 MKMTESKRLVHLEEELHERVIGQEEAVSSVSRAIRRAY------SGLKNPNRPIGSFLFL 555

Query: 60  GPTGVGKTAISRRLAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99
           GPTGVGKT +++ LA  + G+    I+V+++++ E   V R V
Sbjct: 556 GPTGVGKTELAKALASAMFGSQDNMIRVDMSEYMEKHTVSRLV 598


>gi|309358037|emb|CAP34684.2| hypothetical protein CBG_16820 [Caenorhabditis briggsae AF16]
          Length = 749

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK   R     L+N  R  +L A L     P+  LL GP G GKT +++ LA  
Sbjct: 285 VAGCSEAKVEVREFVDYLKNPGRFTKLGAKL-----PRGALLTGPPGCGKTLLAKALAAE 339

Query: 77  AGAPFIKVEVTKFTE-IGYVG 96
           +  PFI +  ++F E IG +G
Sbjct: 340 STVPFISMNGSEFVEVIGGLG 360


>gi|306834615|ref|ZP_07467727.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
 gi|304423251|gb|EFM26405.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|315506403|ref|YP_004085290.1| aaa atpase central domain protein [Micromonospora sp. L5]
 gi|315413022|gb|ADU11139.1| AAA ATPase central domain protein [Micromonospora sp. L5]
          Length = 486

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 17/85 (20%)

Query: 28  RAVAIALRN-----RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           R VA++ R+     RW  ++          P+ IL+ GP G GKT ++R LA   GA F+
Sbjct: 238 REVAVSFRHPQAMARWGARR----------PQGILMYGPPGTGKTMLARALANEVGADFV 287

Query: 83  KVEVTKFTE--IGYVGRNVEQIIRD 105
           ++   +  +  +G   RN+++I R+
Sbjct: 288 EIRTPEILDKYLGGSERNIKRIFRE 312


>gi|282892123|ref|ZP_06300598.1| hypothetical protein pah_c207o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498018|gb|EFB40362.1| hypothetical protein pah_c207o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 851

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA-RLA 77
           IIGQ +A R V+ A+R R R     AD++D   P    + +GPTGVGKT ++R LA  L 
Sbjct: 540 IIGQDEAIRTVSRAIR-RSR-----ADIKDPNRPIGAFMFLGPTGVGKTLLARLLAIHLF 593

Query: 78  GA--PFIKVEVTKFTEIGYVGR 97
           G     I+V+++++ E   V R
Sbjct: 594 GGEDALIQVDMSEYMEKFAVSR 615


>gi|224003887|ref|XP_002291615.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973391|gb|EED91722.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1141

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +++L +GP G  K+ + RRL+ L G PF +   T+FT
Sbjct: 709 EHVLFIGPPGTSKSELGRRLSMLCGGPFFQRLFTRFT 745


>gi|170756193|ref|YP_001780055.1| putative cell division protease FtsH-like protein [Clostridium
           botulinum B1 str. Okra]
 gi|169121405|gb|ACA45241.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           B1 str. Okra]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|153941523|ref|YP_001389771.1| putative cell division protease FtsH-like protein [Clostridium
           botulinum F str. Langeland]
 gi|152937419|gb|ABS42917.1| cell division protease FtsH homolog [Clostridium botulinum F str.
           Langeland]
 gi|295317860|gb|ADF98237.1| cell division protease FtsH-like protein [Clostridium botulinum F
           str. 230613]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|148378403|ref|YP_001252944.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|148287887|emb|CAL81953.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  AG PF  +  + F ++ YVG    +I
Sbjct: 183 MPKGIILYGDPGTGKTLMAKAVAGEAGVPFYAMSGSDFVQV-YVGVGASRI 232


>gi|121998549|ref|YP_001003336.1| ATP-dependent metalloprotease FtsH [Halorhodospira halophila SL1]
 gi|121589954|gb|ABM62534.1| membrane protease FtsH catalytic subunit [Halorhodospira halophila
           SL1]
          Length = 651

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 190 IPRGVLMVGPPGTGKTLLAKAIAGEARVPFFSISGSDFVEM-FVGVGASR-VRDMFQQA 246


>gi|323348569|gb|EGA82813.1| Msp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           P  +LL GP G GKT +++ LA+ +GA FI + ++   +  Y   N
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESN 171


>gi|313889508|ref|ZP_07823154.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122120|gb|EFR45213.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 658

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|297831326|ref|XP_002883545.1| hypothetical protein ARALYDRAFT_479981 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329385|gb|EFH59804.1| hypothetical protein ARALYDRAFT_479981 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 787

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  +  PFI    ++F E+ YVG    + +RDL
Sbjct: 362 PRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVEL-YVGMGASR-VRDL 413


>gi|291242616|ref|XP_002741203.1| PREDICTED: AFG3 ATPase family gene 3-like 2-like, partial
           [Saccoglossus kowalevskii]
          Length = 560

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 90  IPKGAVLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPSR-VRDMFSMA 146


>gi|213584090|ref|ZP_03365916.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     LR   R Q+L   +     PK +L+VGP G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEI 92
           A  PF  +  + F E+
Sbjct: 209 AKVPFFTISGSDFVEM 224


>gi|108803150|ref|YP_643087.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108764393|gb|ABG03275.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 837

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A RAVA A+R R R     A ++D   P  + + +GPTGVGKT ++R LA
Sbjct: 534 LHERVIGQDEAVRAVAEAIR-RAR-----AGIKDPRRPVGSFIFLGPTGVGKTELARTLA 587

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     ++++++++ E   V R V
Sbjct: 588 EYLFGEEEAMVRIDMSEYQEKHTVSRLV 615


>gi|78776720|ref|YP_393035.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
 gi|78497260|gb|ABB43800.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
          Length = 858

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 12/88 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL++ ++GQ  A  AVA A+ RN+       A L     P  + L +GPTGVGKT  ++ 
Sbjct: 568 ELNKEVVGQSKATHAVARAIKRNK-------AGLSSGNSPIGSFLFLGPTGVGKTQTAKT 620

Query: 73  LAR-LAGAP--FIKVEVTKFTEIGYVGR 97
           LA+ L  +P   ++++++++ E   V R
Sbjct: 621 LAKFLFDSPDAMVRIDMSEYMEKHSVSR 648


>gi|50736531|ref|XP_419121.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 806

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 341 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDLFALA 397


>gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12 [Arabidopsis thaliana]
          Length = 825

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 529 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLASKV 586


>gi|33239685|ref|NP_874627.1| ATPase with chaperone activity, ATP-binding subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237210|gb|AAP99279.1| ATPases with chaperone activity, ATP-binding subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 924

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AVA A++ R R     A ++D   P  + L +GPTGVGKT +++ L
Sbjct: 618 ELSTKVIGQSEAVDAVAAAIK-RAR-----AGMKDSRRPIGSFLFLGPTGVGKTELAKTL 671

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 672 AASLFDEQEALVRLDMSEFMERNAVAR 698


>gi|85711023|ref|ZP_01042083.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
 gi|85694936|gb|EAQ32874.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
          Length = 856

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMESLLHKRVVGQNEAVDAVANAIR-RSR-----AGLGDPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           S+ LA          +++++++F E   V R V
Sbjct: 615 SKALANFMFDTDDAMVRIDMSEFMEKHSVARLV 647


>gi|212703189|ref|ZP_03311317.1| hypothetical protein DESPIG_01231 [Desulfovibrio piger ATCC 29098]
 gi|212673455|gb|EEB33938.1| hypothetical protein DESPIG_01231 [Desulfovibrio piger ATCC 29098]
          Length = 768

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 16  LDRYIIGQQDA-KRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRL 73
           L + + GQ++A ++ V   LR+R       A L     P    L  GPTGVGKT ++R L
Sbjct: 456 LKQIVFGQEEAVEQTVRAILRSR-------AGLGQRQRPTGAFLFYGPTGVGKTELARGL 508

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A+  G  F++ +++++ E   V R
Sbjct: 509 AQTMGVEFLRYDMSEYMEPHTVSR 532


>gi|209877821|ref|XP_002140352.1| 26S proteasome regulatory subunit 6b [Cryptosporidium muris RN66]
 gi|209555958|gb|EEA06003.1| 26S proteasome regulatory subunit 6b, putative [Cryptosporidium
           muris RN66]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P  +LL GP G GKT +++ +A    A 
Sbjct: 150 IQKQEVREAVELPLVCPELYQQIGID-----PPTGVLLYGPPGTGKTMLAKAVANHTTAT 204

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 205 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 232


>gi|145550951|ref|XP_001461153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428986|emb|CAK93780.1| unnamed protein product [Paramecium tetraurelia]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K A+ + L      +Q+  D      P+ +LL GP G GKT I++ +A    A FI
Sbjct: 149 KQEIKEAIELPLSCPELYRQIGID-----PPRGVLLYGPPGTGKTMIAKAVAHHTTASFI 203

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 204 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 229


>gi|20092857|ref|NP_618932.1| hypothetical protein MA4064 [Methanosarcina acetivorans C2A]
 gi|19918161|gb|AAM07412.1| hypothetical protein MA_4064 [Methanosarcina acetivorans C2A]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
            +L VGP G GKT+++R L+     PF++V+++  T+  +G   +N++++
Sbjct: 212 KLLFVGPPGTGKTSVARALSEQLSIPFVEVKLSMITDQYLGETAKNIDRV 261


>gi|114330403|ref|YP_746625.1| shikimate kinase [Nitrosomonas eutropha C91]
 gi|114307417|gb|ABI58660.1| shikimate kinase [Nitrosomonas eutropha C91]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV--EVTKFTEIG 93
          EL+P NI+L+G  G GKT + + LA L G  FI V  E+ + T +G
Sbjct: 25 ELIPGNIILIGMMGAGKTTVGKLLANLVGKTFIDVDHEIQQRTGVG 70


>gi|326335237|ref|ZP_08201432.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692508|gb|EGD34452.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 226 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 278


>gi|315651740|ref|ZP_07904745.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Eubacterium saburreum DSM 3986]
 gi|315485995|gb|EFU76372.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Eubacterium saburreum DSM 3986]
          Length = 831

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 12/104 (11%)

Query: 2   KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           K+T N S R   +   L   ++GQ +A  AVA A+R R R       L+D   P  + L 
Sbjct: 495 KITENDSQRLNNLEKVLHERVVGQDEAVSAVARAIR-RGR-----VGLKDPKRPIGSFLF 548

Query: 59  VGPTGVGKTAISRRLA-RLAGA--PFIKVEVTKFTEIGYVGRNV 99
           +GPTGVGKT +S+ LA  + G+    I+V+++++ E   V R V
Sbjct: 549 LGPTGVGKTELSKALAYSIFGSENALIRVDMSEYMEKHSVSRMV 592


>gi|297182614|gb|ADI18773.1| hypothetical protein [uncultured gamma proteobacterium
           HF4000_36I10]
          Length = 870

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELHRRVVGQDEAVVAVSHAVR-RSR-----AGLSDPNRPNGSFLFMGPTGVGKTELCKAL 622

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    +++++++F E   V R
Sbjct: 623 ATFLYDSEEAMVRIDMSEFMEKHSVAR 649


>gi|288904238|ref|YP_003429459.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|306832498|ref|ZP_07465650.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977215|ref|YP_004286931.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730963|emb|CBI12507.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|304425398|gb|EFM28518.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177143|emb|CBZ47187.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 660

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|261252481|ref|ZP_05945054.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           orientalis CIP 102891]
 gi|260935872|gb|EEX91861.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           orientalis CIP 102891]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++    R  L AD +      + L  GPTG
Sbjct: 447 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK--LTRAGLGADHKP---VGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAV 556


>gi|220930935|ref|YP_002507843.1| ATPase AAA-2 domain protein [Halothermothrix orenii H 168]
 gi|219992245|gb|ACL68848.1| ATPase AAA-2 domain protein [Halothermothrix orenii H 168]
          Length = 806

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R L
Sbjct: 505 ELHKRVVGQDEAIQAVSQAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARAL 558

Query: 74  A 74
           A
Sbjct: 559 A 559


>gi|154415376|ref|XP_001580713.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914933|gb|EAY19727.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +LL GP G GKT +++ +A    A FI
Sbjct: 138 KQEVREAVELPLTHGHLYQQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTHAAFI 192

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  ++F +  Y+G    +++RD   +A
Sbjct: 193 SIVGSEFGQ-KYLGEG-PKMVRDTFRLA 218


>gi|323126274|gb|ADX23571.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|315653157|ref|ZP_07906082.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           iners ATCC 55195]
 gi|315489522|gb|EFU79159.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           iners ATCC 55195]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 427 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 478

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 479 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 530

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 531 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 589

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ + + ++S
Sbjct: 590 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFEPLSKES 637

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 638 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 670


>gi|255311682|ref|ZP_05354252.1| ATP-dependent zinc protease [Chlamydia trachomatis 6276]
 gi|255317983|ref|ZP_05359229.1| ATP-dependent zinc protease [Chlamydia trachomatis 6276s]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|224165138|ref|XP_002338774.1| predicted protein [Populus trichocarpa]
 gi|222873444|gb|EEF10575.1| predicted protein [Populus trichocarpa]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 27  IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 83


>gi|224075026|ref|XP_002304524.1| predicted protein [Populus trichocarpa]
 gi|222841956|gb|EEE79503.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 101 RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 158


>gi|152987733|ref|YP_001347148.1| putative chaperone [Pseudomonas aeruginosa PA7]
 gi|150962891|gb|ABR84916.1| probable chaperone [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ+ A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQEPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|149410903|ref|XP_001508651.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 690

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 375 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDLFSLA 431


>gi|56417033|ref|YP_154107.1| ATP-dependent Clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|56388265|gb|AAV86852.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
          Length = 872

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +E+ + +IGQ+ A RAV+ A+R R R     A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 562 AEIGKSVIGQESAVRAVSNAVR-RSR-----AGVQDAQKPMGSFLFLGPTGVGKTELTKA 615

Query: 73  LARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           L+     + +  ++ ++++F E            GYVG
Sbjct: 616 LSEFLFDSRSALLRFDMSEFMEKHSVAKLIGAPPGYVG 653


>gi|54035919|sp|Q9Z6E4|CLPB_STRAL RecName: Full=Chaperone protein ClpB
 gi|4322269|gb|AAD15989.1| heat shock protein ClpB [Streptomyces albus G]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 8/62 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL R +IGQ +A +AV+ A+R R       A + D   P  + L +GPTGVGKT +++ 
Sbjct: 565 AELGRRLIGQSEAVQAVSDAVRTR-------AGIADPDRPTGSFLFLGPTGVGKTELAKA 617

Query: 73  LA 74
           LA
Sbjct: 618 LA 619


>gi|121602591|ref|YP_988888.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bartonella
           bacilliformis KC583]
 gi|120614768|gb|ABM45369.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bartonella
           bacilliformis KC583]
          Length = 788

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 18/106 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   I GQ  A  A+  +++         A LR+   P  N L  GPTGVGKT ++++L
Sbjct: 460 ELKHVIYGQDQAITALVSSIKLAR------AGLREPEKPIGNYLFSGPTGVGKTEVAKQL 513

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           A   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 514 ASSLGIELLRFDMSEYMERHTVARLIGAPPGYVGFDQGGLLTDAVD 559


>gi|95930478|ref|ZP_01313214.1| ATPase AAA-2 [Desulfuromonas acetoxidans DSM 684]
 gi|95133518|gb|EAT15181.1| ATPase AAA-2 [Desulfuromonas acetoxidans DSM 684]
          Length = 754

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA+  G  F + +++++ E   V R
Sbjct: 490 SFLFAGPTGVGKTEVARQLAQQLGVAFTRFDMSEYMEKHSVAR 532


>gi|95930472|ref|ZP_01313208.1| ATP-dependent metalloprotease FtsH [Desulfuromonas acetoxidans DSM
           684]
 gi|95133512|gb|EAT15175.1| ATP-dependent metalloprotease FtsH [Desulfuromonas acetoxidans DSM
           684]
          Length = 619

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 185 IPKGVLLVGSPGTGKTLLARAIAGEADVPFFTISGSDFVEM-FVGVGASR-VRDL 237


>gi|225430366|ref|XP_002282880.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082076|emb|CBI21081.3| unnamed protein product [Vitis vinifera]
          Length = 962

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A ++VA A+R R R     A L D + P  + + +GPTGVGKT +++ LA
Sbjct: 647 LHQRVVGQENAVKSVADAIR-RSR-----AGLSDPIRPIASFMFMGPTGVGKTELAKALA 700

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                     +++++T++ E   V R V
Sbjct: 701 GYLFNTENALVRIDMTEYMEKHAVSRLV 728


>gi|223940419|ref|ZP_03632272.1| ATPase AAA-2 domain protein [bacterium Ellin514]
 gi|223890914|gb|EEF57422.1| ATPase AAA-2 domain protein [bacterium Ellin514]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           ++ + +IGQ++A  A+  ALR R R     ADL+D   P     L+GPTGVGKT +++ L
Sbjct: 525 QMSKVVIGQREAVSAMCKALR-RSR-----ADLKDPKRPIGTFALLGPTGVGKTLLAKTL 578

Query: 74  A 74
           A
Sbjct: 579 A 579


>gi|222152216|ref|YP_002561391.1| cell division protease FtsH [Streptococcus uberis 0140J]
 gi|222113027|emb|CAR40340.1| putative cell division protease FtsH [Streptococcus uberis 0140J]
          Length = 655

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 218 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 261


>gi|187735338|ref|YP_001877450.1| ATP-dependent chaperone ClpB [Akkermansia muciniphila ATCC BAA-835]
 gi|187425390|gb|ACD04669.1| ATP-dependent chaperone ClpB [Akkermansia muciniphila ATCC BAA-835]
          Length = 860

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           +IGQ+ A +AV+ A+R R R     A L+DE  P  + L +GPTGVGKT +S+ LA    
Sbjct: 573 VIGQKQAVKAVSDAVR-RAR-----AGLQDENRPIGSFLFLGPTGVGKTELSKALAEFLF 626

Query: 77  -AGAPFIKVEVTKFTEIGYVGR 97
                 ++++++++ E   V R
Sbjct: 627 DNENAIVRIDMSEYMEKHSVAR 648


>gi|126305005|ref|XP_001377922.1| PREDICTED: similar to AFG3(ATPase family gene 3)-like 1 (yeast)
           [Monodelphis domestica]
          Length = 915

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 326 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 382


>gi|78777867|ref|YP_394182.1| peptidase M41, FtsH [Sulfurimonas denitrificans DSM 1251]
 gi|78498407|gb|ABB44947.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Sulfurimonas denitrificans DSM 1251]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 205 IPKGVLLVGSPGTGKTLLAKAVAGEADVPFFSVTGSSFIEM-FVGVGAAR-VRDLFEQA 261


>gi|322412929|gb|EFY03836.1| cell division protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|251781483|ref|YP_002995784.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390111|dbj|BAH80570.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 661

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|256070834|ref|XP_002571747.1| fidgetin like-1 [Schistosoma mansoni]
 gi|238656894|emb|CAZ27977.1| fidgetin like-1 [Schistosoma mansoni]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  + + F  +  +  T   +VG   E+++R L  +A
Sbjct: 212 PKGLLLFGPPGTGKTLIGKCIASQSNSTFFSISASSLTS-KWVGEG-EKLVRALFSIA 267


>gi|255545124|ref|XP_002513623.1| ATP binding protein, putative [Ricinus communis]
 gi|223547531|gb|EEF49026.1| ATP binding protein, putative [Ricinus communis]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 558 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFSLAAKV 615


>gi|194378588|dbj|BAG63459.1| unnamed protein product [Homo sapiens]
          Length = 662

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 27/99 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 298 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 348

Query: 73  LARL----AGAPFIKVEVTKFTE-----------IGYVG 96
            A+     A   FI+++++KF E            GYVG
Sbjct: 349 TAKYMHKDAKKGFIRLDMSKFQERHEVAKFIGSPPGYVG 387


>gi|149411920|ref|XP_001510851.1| PREDICTED: similar to AFG3(ATPase family gene 3)-like 1 (yeast)
           [Ornithorhynchus anatinus]
          Length = 790

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 312 LKNPKQYQDLGAKI-----PKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 365

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 366 FVGVGPAR-VRDMFAMA 381


>gi|121730758|ref|ZP_01682855.1| ATPase family associated with various cellular activities (AAA)
           protein [Vibrio cholerae V52]
 gi|121627669|gb|EAX60331.1| ATPase family associated with various cellular activities (AAA)
           protein [Vibrio cholerae V52]
          Length = 338

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 126 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 179

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 180 NFLFDSEDAMVRVDMSEFMEKHSVARLV 207


>gi|70727483|ref|YP_254399.1| endopeptidase Clp ATP-binding subunit C [Staphylococcus
           haemolyticus JCSC1435]
 gi|122063324|sp|Q4L3I4|CLPC_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|68448209|dbj|BAE05793.1| endopeptidas Clp ATP-binding chain C [Staphylococcus haemolyticus
           JCSC1435]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA  + 
Sbjct: 510 VIGQNDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAESMF 563

Query: 78  GA--PFIKVEVTKFTEIGYVGR 97
           G     I+V++++F E   V R
Sbjct: 564 GEEDAMIRVDMSEFMEKHAVSR 585


>gi|6321465|ref|NP_011542.1| Msp1p [Saccharomyces cerevisiae S288c]
 gi|462627|sp|P28737|MSP1_YEAST RecName: Full=Protein MSP1; AltName: Full=Tat-binding homolog 4
 gi|404217|emb|CAA48191.1| MSP1 protein [Saccharomyces cerevisiae]
 gi|531756|emb|CAA56956.1| YTA4 (=MSP1) [Saccharomyces cerevisiae]
 gi|1323004|emb|CAA97015.1| MSP1 [Saccharomyces cerevisiae]
 gi|45269435|gb|AAS56098.1| YGR028W [Saccharomyces cerevisiae]
 gi|151943311|gb|EDN61624.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae YJM789]
 gi|190406946|gb|EDV10213.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae RM11-1a]
 gi|207345217|gb|EDZ72108.1| YGR028Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273852|gb|EEU08773.1| Msp1p [Saccharomyces cerevisiae JAY291]
 gi|259146531|emb|CAY79788.1| Msp1p [Saccharomyces cerevisiae EC1118]
 gi|285812224|tpg|DAA08124.1| TPA: Msp1p [Saccharomyces cerevisiae S288c]
 gi|323309131|gb|EGA62359.1| Msp1p [Saccharomyces cerevisiae FostersO]
 gi|323354997|gb|EGA86828.1| Msp1p [Saccharomyces cerevisiae VL3]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           P  +LL GP G GKT +++ LA+ +GA FI + ++   +  Y   N
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESN 171


>gi|270289040|ref|ZP_06195342.1| cell division protein FtsH, putative [Chlamydia muridarum Weiss]
          Length = 869

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 415 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 471


>gi|228473570|ref|ZP_04058322.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
 gi|228274942|gb|EEK13752.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL
Sbjct: 226 IPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 278


>gi|224046054|ref|XP_002192269.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 924

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RDL  +A
Sbjct: 459 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDLFALA 515


>gi|293334905|ref|NP_001169612.1| hypothetical protein LOC100383493 [Zea mays]
 gi|224030381|gb|ACN34266.1| unknown [Zea mays]
          Length = 849

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 536 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 595

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            I+     DEV             D+++G+ A     E  RK
Sbjct: 596 TII---FVDEV-------------DSMLGQRARYGEHEAMRK 621


>gi|167840344|ref|ZP_02467028.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Burkholderia thailandensis MSMB43]
          Length = 622

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 26/192 (13%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT I+R +A    A F  V     + KF   G    ++ +I  +   
Sbjct: 126 PKGVLLYGPPGCGKTLIARAIAHECDAAFFSVSGPEVIHKF--YGESEAHLRKIFEEAAR 183

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGKT-----ATSNTREVFRK 153
            A  IV     D +   RE      E+R+       +D L G+      A +N       
Sbjct: 184 KAPAIVFLDEVDAIAPKRETVVGEVEKRVVAQLLALMDGLSGRQQVIVIAATNLPNTLDP 243

Query: 154 KLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
            LR     D+EI I + D +      +I +  +P  A V +  L+++    +G+  +   
Sbjct: 244 ALRRPGRFDREIAIPIPDRNGRLEVLEIHSRGMPLAADVDLDRLADITHGFVGADLEALC 303

Query: 209 RMSVQKCYPELM 220
           + +   C   LM
Sbjct: 304 KEAAMLCLRRLM 315


>gi|126304978|ref|XP_001377432.1| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Monodelphis domestica]
          Length = 798

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+  G     V  + R+  + 
Sbjct: 340 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQNR 399

Query: 110 AINIV 114
           A  IV
Sbjct: 400 APCIV 404


>gi|77411319|ref|ZP_00787668.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
 gi|77162655|gb|EAO73617.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|328767372|gb|EGF77422.1| hypothetical protein BATDEDRAFT_5010 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 203

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
          PK +LL GP G GKT I+R +A+ +GA F+ + ++     G++G
Sbjct: 13 PKGVLLYGPPGTGKTLIARAVAKESGAEFMVLSLSDLVH-GHIG 55


>gi|294339658|emb|CAZ88018.1| Chaperone clpB (Heat-shock protein F84.1) [Thiomonas sp. 3As]
          Length = 861

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 570 LHRRVVGQDEAIRAVSDAIR-RSR-----AGLSDPRRPYGSFLFLGPTGVGKTELTKGLA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 624 EFLFDTDEHIVRLDMSEFMEKHSVAR 649


>gi|270285015|ref|ZP_06194409.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
          Length = 912

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|221136102|ref|XP_002171224.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 107

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 11/71 (15%)

Query: 246 IVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGS----------INTD 294
           I+FLDE DKI      + +  V  EGVQ+ LL ++EG+ V+    +          ++T 
Sbjct: 1   IIFLDEVDKISCVSGFHQVRDVGGEGVQQGLLKMLEGTVVNVPERTSRKMRGENVPVDTT 60

Query: 295 HILFIASGAFH 305
           +I+F+ASGAF+
Sbjct: 61  NIMFVASGAFN 71


>gi|125540508|gb|EAY86903.1| hypothetical protein OsI_08286 [Oryza sativa Indica Group]
          Length = 816

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 379 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 430


>gi|18424166|ref|NP_568892.1| ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75170859|sp|Q9FIM2|FTSH9_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 9,
           chloroplastic; Short=AtFTSH9; Flags: Precursor
 gi|9759220|dbj|BAB09632.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|16648973|gb|AAL24338.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|332009729|gb|AED97112.1| cell division protease ftsH-9 [Arabidopsis thaliana]
          Length = 806

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  +  PFI    ++F E+ YVG    + +RDL
Sbjct: 362 PRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVEL-YVGMGASR-VRDL 413


>gi|67619095|ref|XP_667627.1| 26S proteasome AAA-ATPase subunit RPT3 [Cryptosporidium hominis
           TU502]
 gi|54658780|gb|EAL37398.1| 26S proteasome AAA-ATPase subunit RPT3 [Cryptosporidium hominis]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P  +LL GP G GKT +++ +A    A 
Sbjct: 154 IQKQEVREAVELPLVCPELYQQIGID-----PPTGVLLYGPPGTGKTMLAKAVANHTTAT 208

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 209 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 236


>gi|322495372|emb|CBZ30676.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G  D K A+   ++  ++ Q+L +       PK +LL GP G GKT ++R LA+  G  F
Sbjct: 104 GLDDVKDALTEHIKWPFQHQELFSGKTVRSHPKGVLLYGPPGTGKTLLARALAKELGCSF 163

Query: 82  IKV 84
           I V
Sbjct: 164 INV 166


>gi|320547726|ref|ZP_08042011.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
 gi|320447801|gb|EFW88559.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|325104507|ref|YP_004274161.1| ATPase AAA-2 domain protein [Pedobacter saltans DSM 12145]
 gi|324973355|gb|ADY52339.1| ATPase AAA-2 domain protein [Pedobacter saltans DSM 12145]
          Length = 847

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +++  IIGQ +A + ++ A+      Q+  A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 526 KINEKIIGQDEAIKKLSKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKEL 579

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           AR    A    I+++++++ E   V R V
Sbjct: 580 ARFMFDADDALIQIDMSEYMEKFAVSRLV 608


>gi|289705692|ref|ZP_06502076.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
           luteus SK58]
 gi|289557532|gb|EFD50839.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
           luteus SK58]
          Length = 851

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           R +  EL R +IGQ +A ++++ A+R R R     A L+D   P  + +  GPTGVGKT 
Sbjct: 512 RNMEEELHRRVIGQDEAIKSLSRAIR-RTR-----AGLKDPNRPSGSFIFAGPTGVGKTE 565

Query: 69  ISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
           +++ LA          I +++++F E   V R
Sbjct: 566 LAKSLAEFLFGDEDALITLDMSEFQEKHTVSR 597


>gi|320009911|gb|ADW04761.1| ATP-dependent chaperone ClpB [Streptomyces flavogriseus ATCC 33331]
          Length = 866

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL R +IGQ +A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 568 SELGRRLIGQGEAVRAVSDAVR-RTR-----AGIADPDRPTGSFLFLGPTGVGKTELAKA 621

Query: 73  LA 74
           LA
Sbjct: 622 LA 623


>gi|222475401|ref|YP_002563818.1| ATP-dependent clp protease ATP-binding subunit (clpB) [Anaplasma
           marginale str. Florida]
 gi|254995214|ref|ZP_05277404.1| ATP-dependent clp protease ATP-binding subunit (clpB) [Anaplasma
           marginale str. Mississippi]
 gi|255003387|ref|ZP_05278351.1| ATP-dependent clp protease ATP-binding subunit (clpB) [Anaplasma
           marginale str. Puerto Rico]
 gi|255004508|ref|ZP_05279309.1| ATP-dependent clp protease ATP-binding subunit (clpB) [Anaplasma
           marginale str. Virginia]
 gi|222419539|gb|ACM49562.1| ATP-dependent clp protease ATP-binding subunit (clpB) [Anaplasma
           marginale str. Florida]
          Length = 882

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +E+ + +IGQ+ A RAV+ A+R R R     A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 572 AEIGKSVIGQESAVRAVSNAVR-RSR-----AGVQDAQKPMGSFLFLGPTGVGKTELTKA 625

Query: 73  LARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           L+     + +  ++ ++++F E            GYVG
Sbjct: 626 LSEFLFDSRSALLRFDMSEFMEKHSVAKLIGAPPGYVG 663


>gi|150390919|ref|YP_001320968.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943083|sp|A6TSZ1|FTSH1_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|149950781|gb|ABR49309.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 590

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKR-AVAIA--LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G Q+AK  A+ +   L+N  +  +  A      MPK ++L G  G GKT ++R LA  
Sbjct: 157 IAGNQEAKENAMELVDFLKNPEKYSRYGAK-----MPKGVILYGSPGTGKTLLARALASE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           AG  F+ V  + F ++ Y G    +I
Sbjct: 212 AGVEFLAVSGSDFVQV-YAGLGAGRI 236


>gi|296135529|ref|YP_003642771.1| ATP-dependent chaperone ClpB [Thiomonas intermedia K12]
 gi|295795651|gb|ADG30441.1| ATP-dependent chaperone ClpB [Thiomonas intermedia K12]
          Length = 861

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 570 LHRRVVGQDEAIRAVSDAIR-RSR-----AGLSDPRRPYGSFLFLGPTGVGKTELTKGLA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 624 EFLFDTDEHIVRLDMSEFMEKHSVAR 649


>gi|242091515|ref|XP_002441590.1| hypothetical protein SORBIDRAFT_09g029900 [Sorghum bicolor]
 gi|241946875|gb|EES20020.1| hypothetical protein SORBIDRAFT_09g029900 [Sorghum bicolor]
          Length = 842

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 528 RGILLFGPPGTGKTMLAKAIANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAP 587

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
            I+     DEV             D+++G+ A     E  RK
Sbjct: 588 TII---FVDEV-------------DSMLGQRARYGEHEAMRK 613


>gi|224053835|ref|XP_002298003.1| predicted protein [Populus trichocarpa]
 gi|222845261|gb|EEE82808.1| predicted protein [Populus trichocarpa]
          Length = 344

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A+ AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 66  RGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 123


>gi|195977170|ref|YP_002122414.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973875|gb|ACG61401.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 201 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 244


>gi|148679799|gb|EDL11746.1| AFG3(ATPase family gene 3)-like 1 (yeast), isoform CRA_a [Mus
           musculus]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 193 LKNPKQYQDLGAKI-----PKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 247 FVGVGPAR-VRDMFAMA 262


>gi|147797283|emb|CAN73743.1| hypothetical protein VITISV_026769 [Vitis vinifera]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 547 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 604


>gi|76789586|ref|YP_328672.1| hypothetical protein CTA_0917 [Chlamydia trachomatis A/HAR-13]
 gi|237803273|ref|YP_002888467.1| Cell division protein [Chlamydia trachomatis B/Jali20/OT]
 gi|237805194|ref|YP_002889348.1| Cell division protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76168116|gb|AAX51124.1| FtsH [Chlamydia trachomatis A/HAR-13]
 gi|231273494|emb|CAX10410.1| Cell division protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274507|emb|CAX11303.1| Cell division protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|71902680|ref|YP_279483.1| cell division protein [Streptococcus pyogenes MGAS6180]
 gi|71801775|gb|AAX71128.1| cell division protein [Streptococcus pyogenes MGAS6180]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 206 LKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 259

Query: 94  YVG 96
           +VG
Sbjct: 260 FVG 262


>gi|66792806|ref|NP_473411.2| AFG3-like protein 1 [Mus musculus]
 gi|190356059|sp|Q920A7|AFG31_MOUSE RecName: Full=AFG3-like protein 1
 gi|34785223|gb|AAH56978.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Mus musculus]
 gi|74198166|dbj|BAE35259.1| unnamed protein product [Mus musculus]
 gi|74204422|dbj|BAE39961.1| unnamed protein product [Mus musculus]
          Length = 789

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 332 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 388


>gi|33240532|ref|NP_875474.1| ATPase with chaperone activity ATP-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|54035809|sp|Q7VBL0|CLPB_PROMA RecName: Full=Chaperone protein ClpB
 gi|33238060|gb|AAQ00127.1| ATPase with chaperone activity ATP-binding subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 864

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           +L+  +IGQ+ A +AVA ++      Q+    L D   P  + LL+GPTGVGKT +S+ L
Sbjct: 572 KLNSKVIGQKQAVQAVADSI------QRSRTGLSDPSRPMGSFLLLGPTGVGKTELSKSL 625

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    +    I+++++++ E   + R
Sbjct: 626 AKELFDSEKAMIRIDMSEYMEKHSISR 652


>gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana]
 gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana]
 gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana]
 gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana]
 gi|332659430|gb|AEE84830.1| FtsH extracellular protease [Arabidopsis thaliana]
          Length = 946

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+
Sbjct: 463 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 502


>gi|328769760|gb|EGF79803.1| hypothetical protein BATDEDRAFT_12021 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A  A A F  +  +  T   +VG + E+++R L  VA
Sbjct: 63  PKGLLLFGPPGTGKTMIGKCIASQAKATFFNISSSSLTS-KWVG-DGEKMVRALFAVA 118


>gi|324506472|gb|ADY42762.1| AFG3-like protein 2 [Ascaris suum]
          Length = 794

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 333 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPAR-VRDMFAMA 389


>gi|321474193|gb|EFX85159.1| hypothetical protein DAPPUDRAFT_194014 [Daphnia pulex]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 201 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 257


>gi|302784750|ref|XP_002974147.1| hypothetical protein SELMODRAFT_442341 [Selaginella moellendorffii]
 gi|300158479|gb|EFJ25102.1| hypothetical protein SELMODRAFT_442341 [Selaginella moellendorffii]
          Length = 845

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 545 RGILLFGPPGTGKTMLAKAVATEAGASFINVSMSSITSKWFGEDEKNVRALFTLAAKVAP 604

Query: 112 NIV 114
            IV
Sbjct: 605 TIV 607


>gi|297748969|gb|ADI51515.1| FtsH [Chlamydia trachomatis D-EC]
 gi|297749849|gb|ADI52527.1| FtsH [Chlamydia trachomatis D-LC]
          Length = 921

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 466 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 522


>gi|260584481|ref|ZP_05852228.1| cell division protein FtsH [Granulicatella elegans ATCC 700633]
 gi|260157999|gb|EEW93068.1| cell division protein FtsH [Granulicatella elegans ATCC 700633]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 279


>gi|226478842|emb|CAX72916.1| spastic paraplegia 7 [Schistosoma japonicum]
          Length = 689

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92
           L+N  + Q L A L     PK  LL+GP G GKT + + LA  A  PF  +   +F E I
Sbjct: 300 LKNPQKYQALGAKL-----PKGALLLGPPGTGKTLLVKALANEAEVPFFSMAGPEFVEVI 354

Query: 93  GYVG 96
           G +G
Sbjct: 355 GGLG 358


>gi|255349246|ref|ZP_05381253.1| Cell division protein [Chlamydia trachomatis 70]
 gi|255503783|ref|ZP_05382173.1| Cell division protein [Chlamydia trachomatis 70s]
 gi|255507464|ref|ZP_05383103.1| Cell division protein [Chlamydia trachomatis D(s)2923]
 gi|289525887|emb|CBJ15369.1| Cell division protein [Chlamydia trachomatis Sweden2]
 gi|296435473|gb|ADH17651.1| Cell division protein [Chlamydia trachomatis E/150]
 gi|296439190|gb|ADH21343.1| Cell division protein [Chlamydia trachomatis E/11023]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|240080307|ref|ZP_04724850.1| ClpA [Neisseria gonorrhoeae FA19]
 gi|240112518|ref|ZP_04727008.1| ClpA [Neisseria gonorrhoeae MS11]
 gi|240123100|ref|ZP_04736056.1| ClpA [Neisseria gonorrhoeae PID332]
 gi|268598588|ref|ZP_06132755.1| ATP-dependent Clp protease [Neisseria gonorrhoeae MS11]
 gi|268681728|ref|ZP_06148590.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID332]
 gi|268582719|gb|EEZ47395.1| ATP-dependent Clp protease [Neisseria gonorrhoeae MS11]
 gi|268622012|gb|EEZ54412.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID332]
 gi|317163876|gb|ADV07417.1| hypothetical protein NGTW08_0445 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|239998602|ref|ZP_04718526.1| ClpA [Neisseria gonorrhoeae 35/02]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|225713436|gb|ACO12564.1| 26S protease regulatory subunit 6B [Lepeophtheirus salmonis]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 166 KQEMKEAVELPLTHFDLYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 220

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|237808996|ref|YP_002893436.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
 gi|237501257|gb|ACQ93850.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R Q+L   +     PK IL+VG  G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 171 LRDPSRFQKLGGKI-----PKGILMVGQPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM- 224

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ + A
Sbjct: 225 FVGVGASR-VRDMFEQA 240


>gi|197302446|ref|ZP_03167501.1| hypothetical protein RUMLAC_01174 [Ruminococcus lactaris ATCC
           29176]
 gi|197298344|gb|EDY32889.1| hypothetical protein RUMLAC_01174 [Ruminococcus lactaris ATCC
           29176]
          Length = 772

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 10/54 (18%)

Query: 31  AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           ++A+R   RR++ P           + LVGP G GKT+I+R LAR    P++++
Sbjct: 336 SLAVRTLTRREESPI----------LCLVGPPGTGKTSIARSLARATNRPYVRI 379


>gi|171778210|ref|ZP_02919439.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283034|gb|EDT48458.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|156937784|ref|YP_001435580.1| ATPase [Ignicoccus hospitalis KIN4/I]
 gi|156566768|gb|ABU82173.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++G +DAKRA+  A+    +R     DL     P+ ILL GP G GKT ++  +A    A
Sbjct: 99  VVGLEDAKRAIEEAIVFPAKR----PDLFPLGWPRGILLFGPPGCGKTLLAAAVANELDA 154

Query: 80  PFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
            FI V+        +G   +NV  +     +VA
Sbjct: 155 EFIYVDAATIMSKWLGQAEKNVASLFNKAREVA 187


>gi|91774045|ref|YP_566737.1| proteasome-activating nucleotidase [Methanococcoides burtonii DSM
           6242]
 gi|91713060|gb|ABE52987.1| Proteasome-activating nucleotidase [Methanococcoides burtonii DSM
           6242]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FI+V  ++  +  Y+G    +++RD+ ++A
Sbjct: 203 PKGVLLFGPPGTGKTLLAKAVAHRTNATFIRVVGSELVQ-KYIGDGA-KLVRDIFEMA 258


>gi|114321705|ref|YP_743388.1| ATPase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228099|gb|ABI57898.1| ATPase AAA-2 domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 864

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           E+ + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 564 EIRKRVVGQDEAVAAVANAIR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKAL 617

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I+V++++F E   V R
Sbjct: 618 ASFLFDTEEAMIRVDMSEFMEKHAVAR 644


>gi|76787819|ref|YP_328742.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77405616|ref|ZP_00782705.1| cell division protein FtsH [Streptococcus agalactiae H36B]
 gi|76562876|gb|ABA45460.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77175760|gb|EAO78540.1| cell division protein FtsH [Streptococcus agalactiae H36B]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|332255287|ref|XP_003276764.1| PREDICTED: AFG3-like protein 2 [Nomascus leucogenys]
          Length = 864

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK+ +L GP G GKT +++  A  A  PFI +  ++F E+ 
Sbjct: 394 LKNPKQYQDLGAKI-----PKDAILTGPPGTGKTLLAKATAGEANVPFITISGSEFLEM- 447

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 448 FVGVGPAR-VRDLFALA 463


>gi|304314884|ref|YP_003850031.1| proteasome-activating nucleotidase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588343|gb|ADL58718.1| predicted proteasome-activating nucleotidase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FIK+  ++F    Y+G    +++R + ++A
Sbjct: 185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVR-KYIGEGA-RLVRGVFELA 240


>gi|301336413|ref|ZP_07224615.1| cell division protein FtsH, putative [Chlamydia muridarum
           MopnTet14]
          Length = 912

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|296436397|gb|ADH18571.1| ATP-dependent zinc protease [Chlamydia trachomatis G/9768]
 gi|296438256|gb|ADH20417.1| ATP-dependent zinc protease [Chlamydia trachomatis G/11074]
 gi|297140757|gb|ADH97515.1| ATP-dependent zinc protease [Chlamydia trachomatis G/9301]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|289551675|ref|YP_003472579.1| ATP-dependent Clp protease, ATP-binding subunit ClpC/Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus lugdunensis HKU09-01]
 gi|315659135|ref|ZP_07912000.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           lugdunensis M23590]
 gi|289181206|gb|ADC88451.1| ATP-dependent Clp protease, ATP-binding subunit ClpC/Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus lugdunensis HKU09-01]
 gi|315495859|gb|EFU84189.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           lugdunensis M23590]
          Length = 819

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA    
Sbjct: 510 VIGQNDAVTSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALAETMF 563

Query: 79  A---PFIKVEVTKFTEIGYVGR 97
                 I+V++++F E   V R
Sbjct: 564 GEEDAMIRVDMSEFMEKHAVSR 585


>gi|254671944|emb|CBA04322.1| cell division protein [Neisseria meningitidis alpha275]
          Length = 384

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ ILL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 192 VPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248


>gi|225869502|ref|YP_002745449.1| cell division protease FtsH [Streptococcus equi subsp. equi 4047]
 gi|225698906|emb|CAW91898.1| putative cell division protease FtsH [Streptococcus equi subsp.
           equi 4047]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 218 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 261


>gi|110644528|ref|YP_672258.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 536]
 gi|123048576|sp|Q0T9M2|MIAA_ECOL5 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|110346120|gb|ABG72357.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 536]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|94991511|ref|YP_599610.1| cell division protein ftsH [Streptococcus pyogenes MGAS2096]
 gi|94545019|gb|ABF35066.1| Cell division protein ftsH [Streptococcus pyogenes MGAS2096]
          Length = 540

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 100 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 143


>gi|15605576|ref|NP_220362.1| ATP-dependent zinc protease [Chlamydia trachomatis D/UW-3/CX]
 gi|3329313|gb|AAC68438.1| ATP-dependent zinc protease [Chlamydia trachomatis D/UW-3/CX]
 gi|296437328|gb|ADH19498.1| ATP-dependent zinc protease [Chlamydia trachomatis G/11222]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|50285721|ref|XP_445289.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524593|emb|CAG58195.1| unnamed protein product [Candida glabrata]
          Length = 771

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 28/148 (18%)

Query: 10  REIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELM------PKNILLV 59
           REI  E+ +     I GQ+D KR +   +       QLP +  D         PK ILL 
Sbjct: 495 REIFLEMPKVYWSDIGGQEDLKRKMKEMI-------QLPLEAADTFAALGIKAPKGILLY 547

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVG---RNVEQIIRDLVDVAINIV 114
           GP G  KT  ++ LA  +G  F+ V   K  EI   YVG   R + +I R     + +I+
Sbjct: 548 GPPGCSKTLTAKALATESGVNFLAV---KGPEIFNKYVGESERAIREIFRKARAASPSII 604

Query: 115 RESRRDEV---REQASINAEERILDALV 139
                D +   R+ +S +A   +L +L+
Sbjct: 605 FFDEIDALSPDRDGSSTSAANHVLTSLL 632


>gi|19745212|ref|NP_606348.1| cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21909548|ref|NP_663816.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28894925|ref|NP_801275.1| cell division protein [Streptococcus pyogenes SSI-1]
 gi|50913359|ref|YP_059331.1| cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94989522|ref|YP_597622.1| cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94993409|ref|YP_601507.1| cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|139472901|ref|YP_001127616.1| cell division protease FtsH [Streptococcus pyogenes str. Manfredo]
 gi|209558599|ref|YP_002285071.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|306826398|ref|ZP_07459712.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
 gi|19747301|gb|AAL96847.1| putative cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21903728|gb|AAM78619.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28810170|dbj|BAC63108.1| putative cell division protein [Streptococcus pyogenes SSI-1]
 gi|50902433|gb|AAT86148.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94543030|gb|ABF33078.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94546917|gb|ABF36963.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|134271147|emb|CAM29357.1| putative cell division protease FtsH [Streptococcus pyogenes str.
           Manfredo]
 gi|209539800|gb|ACI60376.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|304431393|gb|EFM34388.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 206 LKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 259

Query: 94  YVG 96
           +VG
Sbjct: 260 FVG 262


>gi|15678755|ref|NP_275871.1| proteasome-activating nucleotidase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3122631|sp|O26824|PAN_METTH RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|2621817|gb|AAB85233.1| ATP-dependent 26S protease regulatory subunit 4
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FIK+  ++F    Y+G    +++R + ++A
Sbjct: 185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVR-KYIGEGA-RLVRGVFELA 240


>gi|22536201|ref|NP_687052.1| cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|25010090|ref|NP_734485.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76797989|ref|ZP_00780248.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77407696|ref|ZP_00784451.1| cell division protein FtsH [Streptococcus agalactiae COH1]
 gi|77414466|ref|ZP_00790616.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|22533018|gb|AAM98924.1|AE014191_16 cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|23094441|emb|CAD45660.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76586669|gb|EAO63168.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77159476|gb|EAO70637.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|77173695|gb|EAO76809.1| cell division protein FtsH [Streptococcus agalactiae COH1]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|330038670|ref|XP_003239665.1| 26S protease regulatory SU 6A [Cryptomonas paramecium]
 gi|327206589|gb|AEA38767.1| 26S protease regulatory SU 6A [Cryptomonas paramecium]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G+GKT ++R  A    A F+K+  ++  ++ Y+G               +
Sbjct: 176 PKGVLLYGPPGLGKTLLARACAAQTDATFLKIAASQLVQM-YIGEGA------------S 222

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKL 155
           +VRE+      +Q SI   + I DA+  K   T T+  REV R  L
Sbjct: 223 LVREAFSLAKEKQPSIIFIDEI-DAIGTKRSDTTTNGDREVQRTML 267


>gi|319746206|gb|EFV98475.1| cell division protein FtsH [Streptococcus agalactiae ATCC 13813]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|298373585|ref|ZP_06983574.1| cell division protein FtsH [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274637|gb|EFI16189.1| cell division protein FtsH [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 647

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSLAGSDFVEM-FVGVGASR-VRDLFQRA 280


>gi|290561066|gb|ADD37935.1| 26S protease regulatory subunit 6B [Lepeophtheirus salmonis]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 166 KQEMKEAVELPLTHFDLYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 220

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|271501677|ref|YP_003334703.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech586]
 gi|270345232|gb|ACZ77997.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech586]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA    N  RR +  A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVA----NSIRRSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|254493322|ref|ZP_05106493.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 1291]
 gi|226512362|gb|EEH61707.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 1291]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|222035941|emb|CAP78686.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli LF82]
 gi|312948820|gb|ADR29647.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|169830065|ref|YP_001700223.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           sphaericus C3-41]
 gi|168994553|gb|ACA42093.1| Negative regulator of genetic competence clpC/mecB [Lysinibacillus
           sphaericus C3-41]
          Length = 813

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R R R     A L+D   P  + + +GPTGVGKT +
Sbjct: 501 QLEEELHKRVVGQGEAVEAISRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTEL 554

Query: 70  SRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +R LA +        I+V+++++ E            GYVG
Sbjct: 555 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYVG 595


>gi|122937699|gb|ABM68561.1| ATP-dependent Clp protease regulatory subunit ClpX [Lilium
           longiflorum]
          Length = 109

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291
           G+V++DE DKI  +     I   VS EGVQ+ LL ++EG+ V+  + G+          I
Sbjct: 16  GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 75

Query: 292 NTDHILFIASGAF 304
           +T  ILFI  GAF
Sbjct: 76  DTKDILFICGGAF 88


>gi|186475703|ref|YP_001857173.1| ATP-dependent chaperone ClpB [Burkholderia phymatum STM815]
 gi|184192162|gb|ACC70127.1| ATP-dependent chaperone ClpB [Burkholderia phymatum STM815]
          Length = 865

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHQRVVGQDEAISAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     A    I++++++F E   V R
Sbjct: 621 CKALAAFLFDAEDHLIRIDMSEFMEKHSVAR 651


>gi|94987644|ref|YP_595745.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94541152|gb|ABF31201.1| cell division protein [Streptococcus pyogenes MGAS9429]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 206 LKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 259

Query: 94  YVG 96
           +VG
Sbjct: 260 FVG 262


>gi|6016719|gb|AAF01545.1|AC009325_15 putative cell division control protein [Arabidopsis thaliana]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  IL  GP G GKT ++  +A  AG PF K+  T+   I  V    E+ IR+L   A
Sbjct: 150 PSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEV--ISGVSGASEENIRELFSKA 205


>gi|115447609|ref|NP_001047584.1| Os02g0649700 [Oryza sativa Japonica Group]
 gi|75323554|sp|Q6H6R9|FTSH7_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 7,
           chloroplastic; Short=OsFTSH7; Flags: Precursor
 gi|49388450|dbj|BAD25580.1| putative cell division protein FtsH3 [Oryza sativa Japonica Group]
 gi|113537115|dbj|BAF09498.1| Os02g0649700 [Oryza sativa Japonica Group]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LLVG  G GKT +++ +A  A  PFI    ++F E+ YVG    + +RDL
Sbjct: 379 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGAAR-VRDL 430


>gi|298345554|ref|YP_003718241.1| chaperone ATPase [Mobiluncus curtisii ATCC 43063]
 gi|304391110|ref|ZP_07373062.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315656114|ref|ZP_07909005.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|298235615|gb|ADI66747.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           curtisii ATCC 43063]
 gi|304325993|gb|EFL93239.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315493116|gb|EFU82716.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ +A +AV+ ++R R R     A L+D   P  + +  GPTGVGKT +++ L
Sbjct: 519 ELHKRIIGQDEAVKAVSQSIR-RTR-----AGLKDPKRPGGSFVFAGPTGVGKTELAKAL 572

Query: 74  ARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           A          +++++++F+E            GYVG
Sbjct: 573 AEFLFGDENALVQLDMSEFSEKHTASRLFGSPPGYVG 609


>gi|203284683|ref|YP_002222423.1| cell division protein [Borrelia duttonii Ly]
 gi|203288216|ref|YP_002223231.1| cell division protein [Borrelia recurrentis A1]
 gi|201084126|gb|ACH93717.1| cell division protein [Borrelia duttonii Ly]
 gi|201085436|gb|ACH95010.1| cell division protein [Borrelia recurrentis A1]
          Length = 636

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 205 IPKGVLLVGSPGTGKTLLAKAVAGEAGVNFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 261


>gi|166154185|ref|YP_001654303.1| cell division protein [Chlamydia trachomatis 434/Bu]
 gi|166155060|ref|YP_001653315.1| cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335430|ref|ZP_07223674.1| cell division protein [Chlamydia trachomatis L2tet1]
 gi|310943125|sp|B0B970|FTSH_CHLT2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|165930173|emb|CAP03657.1| Cell division protein [Chlamydia trachomatis 434/Bu]
 gi|165931048|emb|CAP06611.1| Cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 458 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514


>gi|222480480|ref|YP_002566717.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453382|gb|ACM57647.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 776

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  ILL GP G GKT ++R +A  +G  FI+V   +  +  YVG + E+ +RDL D A
Sbjct: 551 PTGILLHGPPGTGKTLLARGIAGESGVNFIQVAGPELLDR-YVGES-EKAVRDLFDRA 606


>gi|59800851|ref|YP_207563.1| hypothetical protein NGO0408 [Neisseria gonorrhoeae FA 1090]
 gi|194098151|ref|YP_002001199.1| ClpA [Neisseria gonorrhoeae NCCP11945]
 gi|240013725|ref|ZP_04720638.1| ClpA [Neisseria gonorrhoeae DGI18]
 gi|240016163|ref|ZP_04722703.1| ClpA [Neisseria gonorrhoeae FA6140]
 gi|240120795|ref|ZP_04733757.1| ClpA [Neisseria gonorrhoeae PID24-1]
 gi|240125351|ref|ZP_04738237.1| ClpA [Neisseria gonorrhoeae SK-92-679]
 gi|268683955|ref|ZP_06150817.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-92-679]
 gi|293399444|ref|ZP_06643597.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           gonorrhoeae F62]
 gi|59717746|gb|AAW89151.1| putative ATP-dependent C1p protease [Neisseria gonorrhoeae FA 1090]
 gi|193933441|gb|ACF29265.1| ClpA [Neisseria gonorrhoeae NCCP11945]
 gi|268624239|gb|EEZ56639.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-92-679]
 gi|291610013|gb|EFF39135.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           gonorrhoeae F62]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|24378545|ref|NP_720500.1| putative cell division protein FtsH [Streptococcus mutans UA159]
 gi|24376393|gb|AAN57806.1|AE014853_13 putative cell division protein FtsH [Streptococcus mutans UA159]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 218 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 261


>gi|15834849|ref|NP_296608.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
 gi|7190269|gb|AAF39101.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
          Length = 920

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    + IRD+ + A
Sbjct: 466 IPKGILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 522


>gi|15674261|ref|NP_268434.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71909827|ref|YP_281377.1| cell division protein [Streptococcus pyogenes MGAS5005]
 gi|13621337|gb|AAK33156.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71852609|gb|AAZ50632.1| cell division protein [Streptococcus pyogenes MGAS5005]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 206 LKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 259

Query: 94  YVG 96
           +VG
Sbjct: 260 FVG 262


>gi|332969337|gb|EGK08362.1| chaperone protein ClpB [Kingella kingae ATCC 23330]
          Length = 858

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A RAVA A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHKRVVGQDEAVRAVADAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKTLA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+V+++++ E   + R
Sbjct: 622 NFLFDSEEHLIRVDMSEYMEKHSIAR 647


>gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 743

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 211 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDYFEEAKK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 269 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 328

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 329 SLDPALRRGGRFDKEINLTV 348


>gi|323333485|gb|EGA74879.1| Msp1p [Saccharomyces cerevisiae AWRI796]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT +++ LA+ +GA FI + ++   +  Y
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWY 167


>gi|331658742|ref|ZP_08359684.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA206]
 gi|331053324|gb|EGI25353.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA206]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 839

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 28/190 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----D 108
           PK +LL GP G GKT +++ +A   GA F  +   +     Y G + EQ +R++     D
Sbjct: 226 PKGVLLHGPPGTGKTLLAKAVANECGAEFFSIAGPEIMS-KYYGES-EQRLREIFENARD 283

Query: 109 VAINIVRESRRDEV---REQASINAEERILDALV---------GKT---ATSNTREVFRK 153
            A +I+     D +   RE+ +   E R++  L+         G+      +N  +    
Sbjct: 284 NAPSIIFIDELDSIAPRREEVTGEVERRVVAQLLTMMDGLEERGQVVVIGATNRVDAVDP 343

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMG------SGRKK 206
            LR G   D+EI+I V D    +    I   G  +  +NL +L S   G      SG  K
Sbjct: 344 ALRRGGRFDREIEIGVPDAHDRLEILQIHTRGMPLDNVNLEKLASTTHGFVGADLSGLAK 403

Query: 207 KIRMSVQKCY 216
           +  M   + Y
Sbjct: 404 EAAMKALRRY 413


>gi|239978025|ref|ZP_04700549.1| AAA ATPase, central region [Streptomyces albus J1074]
 gi|291449928|ref|ZP_06589318.1| ATPase [Streptomyces albus J1074]
 gi|291352877|gb|EFE79779.1| ATPase [Streptomyces albus J1074]
          Length = 876

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 20/106 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAV-AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           P E+++ LD Y+ G   A+ A+ A+A R R R+++   +      P ++L  GP G GKT
Sbjct: 600 PAELLAGLDAYV-GLAPARAALTALAWRLRMRQERGAGNFD----PPHLLFTGPPGTGKT 654

Query: 68  AISRRLARLAGAPFIK---------VEVTKFTEIG-YVGRNVEQII 103
            +    ARL GA F           VEVT+   +G Y+G+   +++
Sbjct: 655 TV----ARLVGALFRSLGLLRGGHVVEVTRVDLVGEYLGQTAPKVV 696


>gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT +++ LA+ +GA FI + ++   +  Y
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWY 167


>gi|157865839|ref|XP_001681626.1| proteasome regulatory ATPase subunittcc1l8.3 [Leishmania major
           strain Friedlin]
 gi|68124924|emb|CAJ02460.1| putative proteasome regulatory ATPase subunittcc1l8.3 [Leishmania
           major strain Friedlin]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT + + +AR   A FI
Sbjct: 166 KQEIREAVELPLTHAGLYEQIGID-----PPRGVLLYGPPGTGKTMLVKAVARHTKASFI 220

Query: 83  KVEVTKFTE--IGYVGRNVEQIIR 104
           +V  ++F +  +G   R V  + R
Sbjct: 221 RVVGSEFVQKFLGEGPRKVRDVFR 244


>gi|45657679|ref|YP_001765.1| ATP-dependent Clp protease ATP-binding subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600919|gb|AAS70402.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 740

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA + G   I+ +++++ E   V R
Sbjct: 480 SFLFAGPTGVGKTELTRKLAEILGVELIRFDMSEYMEKHTVSR 522


>gi|34540850|ref|NP_905329.1| clpB protein [Porphyromonas gingivalis W83]
 gi|54035793|sp|Q7MVE7|CLPB_PORGI RecName: Full=Chaperone protein ClpB
 gi|34397164|gb|AAQ66228.1| clpB protein [Porphyromonas gingivalis W83]
          Length = 863

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A RAVA A+R R R     A L+D   P  + + +G TGVGKT ++R L
Sbjct: 563 ELHKRVIGQDEAIRAVADAVR-RSR-----AGLQDPKRPIGSFIFLGTTGVGKTELARAL 616

Query: 74  ARL 76
           A L
Sbjct: 617 AEL 619


>gi|323304947|gb|EGA58704.1| Msp1p [Saccharomyces cerevisiae FostersB]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT +++ LA+ +GA FI + ++   +  Y
Sbjct: 126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWY 167


>gi|313679327|ref|YP_004057066.1| ATP-dependent chaperone clpb [Oceanithermus profundus DSM 14977]
 gi|313152042|gb|ADR35893.1| ATP-dependent chaperone ClpB [Oceanithermus profundus DSM 14977]
          Length = 855

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A ++VA A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 556 ELHKRVVGQDEAIQSVADAIR-RAR-----AGLKDPNRPIGSFMFLGPTGVGKTELAKTL 609

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I++++T++ E   V R
Sbjct: 610 AETLFDTEEAMIRIDMTEYMEKHSVAR 636


>gi|302770817|ref|XP_002968827.1| hypothetical protein SELMODRAFT_440620 [Selaginella moellendorffii]
 gi|300163332|gb|EFJ29943.1| hypothetical protein SELMODRAFT_440620 [Selaginella moellendorffii]
          Length = 837

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAI 111
           + ILL GP G GKT +++ +A  AGA FI V ++  T    G   +NV  +      VA 
Sbjct: 537 RGILLFGPPGTGKTMLAKAVATEAGASFINVSMSSITSKWFGEDEKNVRALFTLAAKVAP 596

Query: 112 NIV 114
            IV
Sbjct: 597 TIV 599


>gi|268594460|ref|ZP_06128627.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 35/02]
 gi|268547849|gb|EEZ43267.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 35/02]
          Length = 769

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 466 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 520

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 521 YSMGVPLQRFDMSEYMERHAVSR 543


>gi|254995051|ref|ZP_05277241.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Mississippi]
          Length = 767

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   +  A+R         A LR    P  + LL GPTGVGKT + ++LA
Sbjct: 466 LKQVIFGQDAAISQIVDAIR------IAKAGLRSHQKPLASYLLAGPTGVGKTELVKQLA 519

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNV 99
           +  G   ++ +++++ E   V R +
Sbjct: 520 KNMGMKLVRFDMSEYMESHTVARMI 544


>gi|311740167|ref|ZP_07713999.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304722|gb|EFQ80793.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 918

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A ++V+ A+R R R     A L+D   P  + +
Sbjct: 517 LKLTEKESNRLLNMEEELHKRIIGQDEAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 570

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 571 FAGPSGVGKTELSKSLA 587


>gi|188995072|ref|YP_001929324.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
 gi|188594752|dbj|BAG33727.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
          Length = 863

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A RAVA A+R R R     A L+D   P  + + +G TGVGKT ++R L
Sbjct: 563 ELHKRVIGQDEAIRAVADAVR-RSR-----AGLQDPKRPIGSFIFLGTTGVGKTELARAL 616

Query: 74  ARL 76
           A L
Sbjct: 617 AEL 619


>gi|123425085|ref|XP_001306726.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121888316|gb|EAX93796.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 440

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G   AK+AV  A+    +   L  +LR+   P+ +L  GP G GKT I++ LA  A  
Sbjct: 172 IAGLDHAKQAVQEAIILPMKYPDLFTELREP--PRGVLFFGPPGTGKTLIAKALATEAQC 229

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  +  T   +VG   E++ R L  +A
Sbjct: 230 TFFNISASSLTS-KWVGEG-EKLTRALFALA 258


>gi|92115196|ref|YP_575124.1| ATP-dependent metalloprotease FtsH [Chromohalobacter salexigens DSM
           3043]
 gi|91798286|gb|ABE60425.1| membrane protease FtsH catalytic subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 655

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VGP G GKT +++ ++  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAISGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|330796525|ref|XP_003286317.1| hypothetical protein DICPUDRAFT_15780 [Dictyostelium purpureum]
 gi|325083744|gb|EGC37189.1| hypothetical protein DICPUDRAFT_15780 [Dictyostelium purpureum]
          Length = 821

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAI 111
           K IL+ GP G GKT ++R +A  A A FI + +++    EIG   + + +I R   + A 
Sbjct: 591 KGILMYGPPGTGKTMLARAVAHEAKANFIPINISELIQGEIGESEKAISEIFRIASNCAP 650

Query: 112 NIV 114
           +I+
Sbjct: 651 SII 653


>gi|322489353|emb|CBZ24612.1| proteasome regulatory ATPase subunittcc1l8.3,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT + + +AR   A FI
Sbjct: 166 KQEIREAVELPLTHAGLYEQIGID-----PPRGVLLYGPPGTGKTMLVKAVARHTKASFI 220

Query: 83  KVEVTKFTE--IGYVGRNVEQIIR 104
           +V  ++F +  +G   R V  + R
Sbjct: 221 RVVGSEFVQKFLGEGPRKVRDVFR 244


>gi|311281277|ref|YP_003943508.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Enterobacter
           cloacae SCF1]
 gi|308750472|gb|ADO50224.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Enterobacter
           cloacae SCF1]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+ +  +PK I L+GPT  GKTA++  L ++     I V+   + +  +IG    + E+
Sbjct: 2   SDVTEASLPKAIFLMGPTASGKTALAIALRKVLPVELISVDSALIYRGMDIGTAKPDAEE 61

Query: 102 I------IRDLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
           +      + D++D A +    + RRD + E A I A  RI   LVG T
Sbjct: 62  LNAAPHRLLDILDPARSYSAADFRRDALAEMAEITAAGRI-PLLVGGT 108


>gi|284042270|ref|YP_003392610.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
 gi|283946491|gb|ADB49235.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
          Length = 855

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA ALR R R     A L+D   P    L +GPTGVGKT ++R LA
Sbjct: 572 LHQRVIGQDEAVEAVANALR-RSR-----AGLQDPERPIGTFLFLGPTGVGKTELARALA 625

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    ++++++++ E   V R
Sbjct: 626 EFMFDSQDAMVRLDMSEYMERHAVSR 651


>gi|282163923|ref|YP_003356308.1| AAA ATPase [Methanocella paludicola SANAE]
 gi|282156237|dbj|BAI61325.1| AAA ATPase [Methanocella paludicola SANAE]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 1   MKLTFNFSPREIVSELDRYII-GQQDA---KRAVAIALRNRWRRQQLPADLRDELMPKNI 56
           +KL    +P E+  +LD  ++ G+Q+A   K   AI  R+  R+      LR+      +
Sbjct: 164 LKLVHIVAPEEVGQKLDDIVLTGEQEAEVEKIVKAIQYRDYLRK----IGLRE---IGKL 216

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           L VGP G GKT+ +R ++     PF++V+++  T   +G   +N++++ 
Sbjct: 217 LFVGPPGTGKTSTARAMSARLRLPFLEVKLSMITSQYLGETSKNIDKVF 265


>gi|294892451|ref|XP_002774070.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879274|gb|EER05886.1| Katanin p60 ATPase-containing subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP---KNILLVGPTGVGKTAISRRLARL 76
           +IG +DAKRAV  A+       + P      L+    + +LL GP GVGKT +++ +A  
Sbjct: 161 VIGCEDAKRAVKEAVVFP---LKFPDLFHGPLLSESWRGVLLFGPPGVGKTMLAKAVATE 217

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            G  F  V  +  T +     + E++IR L ++A+
Sbjct: 218 CGTTFFNVSAS--TVVSKWRGDSEKLIRCLFELAL 250


>gi|255537837|ref|XP_002509985.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223549884|gb|EEF51372.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 925

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+
Sbjct: 448 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 487


>gi|149376384|ref|ZP_01894147.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
 gi|149359398|gb|EDM47859.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++    R  L A  + E      L  GPTGVGKT +
Sbjct: 453 RNLERDLKMVVFGQDPAIESLSTAIK--LARAGLKAPEKPE---GAFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA++ G   ++ +++++ E   V R
Sbjct: 508 TKQLAKVLGIELVRFDMSEYMERHTVSR 535


>gi|146080180|ref|XP_001463954.1| proteasome regulatory ATPase subunitt cc1l8.3 [Leishmania infantum
           JPCM5]
 gi|321399067|emb|CBZ08410.1| putative proteasome regulatory ATPase subunittcc1l8.3 [Leishmania
           infantum JPCM5]
 gi|322497346|emb|CBZ32421.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT + + +AR   A FI
Sbjct: 166 KQEIREAVELPLTHAGLYEQIGID-----PPRGVLLYGPPGTGKTMLVKAVARHTKASFI 220

Query: 83  KVEVTKFTE--IGYVGRNVEQIIR 104
           +V  ++F +  +G   R V  + R
Sbjct: 221 RVVGSEFVQKFLGEGPRKVRDVFR 244


>gi|126653478|ref|ZP_01725571.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
 gi|126589756|gb|EAZ83890.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R R R     A L+D   P  + + +GPTGVGKT +
Sbjct: 502 QLEEELHKRVVGQGEAVEAISRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +R LA +        I+V+++++ E            GYVG
Sbjct: 556 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYVG 596


>gi|150399940|ref|YP_001323707.1| ATPase central domain-containing protein [Methanococcus vannielii
           SB]
 gi|150012643|gb|ABR55095.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 371

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG-YVGRNVEQI 102
           E  PKNIL  GP G GKT ++R LA     P   ++ T+   IG +VG   +QI
Sbjct: 153 EWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATEL--IGDHVGDGSKQI 204


>gi|145527814|ref|XP_001449707.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417295|emb|CAK82310.1| unnamed protein product [Paramecium tetraurelia]
          Length = 563

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK ILLVG  G GKT ++R LA  AG  F+     +F E+ +VG
Sbjct: 180 LPKGILLVGRPGTGKTLLARALAEEAGCTFLYKSGAEFDEM-FVG 223


>gi|26251063|ref|NP_757103.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli CFT073]
 gi|191174522|ref|ZP_03036020.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli F11]
 gi|218692505|ref|YP_002400717.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli ED1a]
 gi|227886786|ref|ZP_04004591.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 83972]
 gi|300987264|ref|ZP_07178093.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 45-1]
 gi|300988652|ref|ZP_07178792.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 200-1]
 gi|301045957|ref|ZP_07193141.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 185-1]
 gi|331660746|ref|ZP_08361678.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA206]
 gi|33301389|sp|Q8CXV3|MIAA_ECOL6 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|239977374|sp|B7MSY4|MIAA_ECO81 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|26111495|gb|AAN83677.1|AE016771_188 tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli CFT073]
 gi|190905202|gb|EDV64843.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli F11]
 gi|218430069|emb|CAR11059.2| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli ED1a]
 gi|227836359|gb|EEJ46825.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli 83972]
 gi|300302040|gb|EFJ58425.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 185-1]
 gi|300305885|gb|EFJ60405.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 200-1]
 gi|300407741|gb|EFJ91279.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 45-1]
 gi|307556338|gb|ADN49113.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli ABU 83972]
 gi|315293547|gb|EFU52899.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 153-1]
 gi|315299052|gb|EFU58306.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 16-3]
 gi|324013813|gb|EGB83032.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 60-1]
 gi|331051788|gb|EGI23827.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli TA206]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|328852964|gb|EGG02106.1| ATP-dependent peptidase [Melampsora larici-populina 98AG31]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ +LL GP G GKT ++R +A  AG  F     ++F E+ YVG    +I
Sbjct: 411 LPRGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEM-YVGVGARRI 460


>gi|324005234|gb|EGB74453.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 57-2]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|320354305|ref|YP_004195644.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320122807|gb|ADW18353.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +P  +LL G  G GKT +++ +A  AG PF  +  + F E+ YVG    + +RDL +
Sbjct: 230 IPTGVLLYGEPGTGKTLLAKAIAGEAGVPFFSISGSHFVEM-YVGIGASR-VRDLFN 284


>gi|315298640|gb|EFU57895.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 16-3]
          Length = 861

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 651


>gi|312881478|ref|ZP_07741270.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309370844|gb|EFP98304.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++    R  L AD +      + L  GPTG
Sbjct: 447 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK--LTRAGLGADHKP---VGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAV 556


>gi|306815614|ref|ZP_07449763.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli NC101]
 gi|305851276|gb|EFM51731.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli NC101]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|299541899|ref|ZP_07052222.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           fusiformis ZC1]
 gi|298725637|gb|EFI66278.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           fusiformis ZC1]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R R R     A L+D   P  + + +GPTGVGKT +
Sbjct: 502 QLEEELHKRVVGQGEAVEAISRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +R LA +        I+V+++++ E            GYVG
Sbjct: 556 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYVG 596


>gi|291414584|ref|XP_002723539.1| PREDICTED: Afg3l1 protein-like [Oryctolagus cuniculus]
          Length = 936

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 479 IPKGAMLTGPPGTGKTLLAKAAAGEASVPFITVNGSEFLEM-FVGVGPAR-VRDMFTMA 535


>gi|268596456|ref|ZP_06130623.1| ATP-dependent Clp protease [Neisseria gonorrhoeae FA19]
 gi|268550244|gb|EEZ45263.1| ATP-dependent Clp protease [Neisseria gonorrhoeae FA19]
          Length = 769

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 466 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 520

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 521 YSMGVPLQRFDMSEYMERHAVSR 543


>gi|255003210|ref|ZP_05278174.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Puerto Rico]
 gi|255004338|ref|ZP_05279139.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Virginia]
          Length = 768

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   +  A+R         A LR    P  + LL GPTGVGKT + ++LA
Sbjct: 467 LKQVIFGQDAAISQIVDAIR------IAKAGLRSHQKPLASYLLAGPTGVGKTELVKQLA 520

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNV 99
           +  G   ++ +++++ E   V R +
Sbjct: 521 KNMGMKLVRFDMSEYMESHTVARMI 545


>gi|240115258|ref|ZP_04729320.1| ClpA [Neisseria gonorrhoeae PID18]
 gi|268600941|ref|ZP_06135108.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID18]
 gi|268585072|gb|EEZ49748.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID18]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|225464698|ref|XP_002277539.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 452 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 509


>gi|91213720|ref|YP_543706.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli UTI89]
 gi|117626518|ref|YP_859841.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli APEC O1]
 gi|218561330|ref|YP_002394243.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli S88]
 gi|237703838|ref|ZP_04534319.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp.
           3_2_53FAA]
 gi|331650296|ref|ZP_08351368.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli M605]
 gi|122421472|sp|Q1R389|MIAA_ECOUT RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|166198906|sp|A1AJ77|MIAA_ECOK1 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|226704724|sp|B7MKX5|MIAA_ECO45 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|91075294|gb|ABE10175.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli UTI89]
 gi|115515642|gb|ABJ03717.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli APEC O1]
 gi|218368099|emb|CAR05906.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli S88]
 gi|226901750|gb|EEH88009.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp.
           3_2_53FAA]
 gi|281181267|dbj|BAI57597.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
           [Escherichia coli SE15]
 gi|294492868|gb|ADE91624.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli IHE3034]
 gi|307629242|gb|ADN73546.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli UM146]
 gi|315288452|gb|EFU47850.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli MS 110-3]
 gi|323950760|gb|EGB46638.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H252]
 gi|323955458|gb|EGB51222.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli H263]
 gi|331040690|gb|EGI12848.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia
           coli M605]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEE 61

Query: 102 IIRDLVDVAINIVRES--------RRDEVREQASINAEERILDALVGKT 142
           ++     + +NI   S        RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRL-LNIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|85859781|ref|YP_461983.1| cell division protein [Syntrophus aciditrophicus SB]
 gi|123516893|sp|Q2LUQ1|FTSH_SYNAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|85722872|gb|ABC77815.1| cell division protein [Syntrophus aciditrophicus SB]
          Length = 736

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LLVG  G GKT +++ +A  AG PF  +   +F E+  VG    + +RDL   A
Sbjct: 294 PKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSAAEFVEM-IVGVGAAR-VRDLFKQA 349


>gi|78184486|ref|YP_376921.1| ATPase [Synechococcus sp. CC9902]
 gi|78168780|gb|ABB25877.1| ATPase [Synechococcus sp. CC9902]
          Length = 862

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L R +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLETDLHRRVIGQDQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLA-RL--AGAPFIKVEVTKFTEIGYVGR 97
           S+ LA RL  +    ++++++++ E   V R
Sbjct: 620 SKALANRLFDSDDAMVRIDMSEYMEKHTVSR 650


>gi|332796490|ref|YP_004457990.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1]
 gi|332694225|gb|AEE93692.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1]
          Length = 390

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  + A FI V  ++F +  +VG    +++R++ ++A
Sbjct: 167 PKGVLLYGPPGTGKTMLAKAVATESNATFIHVVASEFAQ-KFVGEGA-RVVREVFELA 222


>gi|322377894|ref|ZP_08052382.1| cell division protein FtsH [Streptococcus sp. M334]
 gi|321281070|gb|EFX58082.1| cell division protein FtsH [Streptococcus sp. M334]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|260440924|ref|ZP_05794740.1| ClpA [Neisseria gonorrhoeae DGI2]
 gi|291044247|ref|ZP_06569956.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           gonorrhoeae DGI2]
 gi|291011141|gb|EFE03137.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           gonorrhoeae DGI2]
          Length = 763

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L+  + GQ+DA  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 460 DLNNMVYGQEDAIDALVSAVKMSRSGLGLP----DKPI-GSFLFSGPTGVGKTEVAKQLA 514

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 515 YSMGVPLQRFDMSEYMERHAVSR 537


>gi|290579539|ref|YP_003483931.1| putative cell division protein [Streptococcus mutans NN2025]
 gi|254996438|dbj|BAH87039.1| putative cell division protein [Streptococcus mutans NN2025]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 218 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 261


>gi|240141658|ref|YP_002966138.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens AM1]
 gi|240011635|gb|ACS42861.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens AM1]
          Length = 827

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 574


>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 839

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A  
Sbjct: 244 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEAKA 301

Query: 113 IV 114
           I 
Sbjct: 302 IA 303


>gi|6056389|gb|AAF02853.1|AC009324_2 Putative 26S proteasome ATPase subunit [Arabidopsis thaliana]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT ++R +A   GA FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 226 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQ-KYIGEGA-RMVRELFQMA 281


>gi|331010053|gb|EGH90109.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEV--------TKFTEIGYVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V         K     Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGPRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|329895231|ref|ZP_08270895.1| ClpB protein [gamma proteobacterium IMCC3088]
 gi|328922469|gb|EGG29811.1| ClpB protein [gamma proteobacterium IMCC3088]
          Length = 856

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARL-- 76
           ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA    
Sbjct: 570 VVGQDEAVRAVSDAVR-RAR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKSLANFLF 623

Query: 77  -AGAPFIKVEVTKFTEIGYVGR 97
            +    +++++++F E   V R
Sbjct: 624 DSEQAMVRIDMSEFMEKHSVAR 645


>gi|325183421|emb|CCA17882.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 174 PKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVD-KYIGESA-RIIREMFGYA 229


>gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
 gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
          Length = 275

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 25/114 (21%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK ILL GP G GKT +++ +A+  GA F     + F E+ +VG    ++         N
Sbjct: 187 PKGILLYGPPGTGKTLLAQAIAKELGATFFSTSGSGFNEL-FVGVGASRV--------RN 237

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
           + + +R+      A +  +E  +DAL G           R+K   GE S+K I+
Sbjct: 238 LFQNARK---HAPAVVFIDE--VDALAG-----------RRKQHGGEESEKNIN 275


>gi|313683015|ref|YP_004060753.1| membrane protease ftsh catalytic subunit [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155875|gb|ADR34553.1| membrane protease FtsH catalytic subunit [Sulfuricurvum kujiense
           DSM 16994]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL + A
Sbjct: 215 IPKGVLLVGSPGTGKTLLAKAVAGEAEVPFFSVSGSSFIEM-FVGVGAAR-VRDLFEQA 271


>gi|312111885|ref|YP_003990201.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
 gi|311216986|gb|ADP75590.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 720

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT +++ LA
Sbjct: 424 LAKKVIGQEEAVKKVAKAIR-RSR-----AGLKAKHRPVGSFLFVGPTGVGKTELAKTLA 477

Query: 75  -RLAGA--PFIKVEVTKFTE-----------IGYVG 96
             L G+    I+++++++ E            GYVG
Sbjct: 478 EELFGSKDAMIRLDMSEYMEKHSVSKLIGSPPGYVG 513


>gi|307172984|gb|EFN64126.1| Fidgetin-like protein 1 [Camponotus floridanus]
          Length = 636

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK IL  GP G GKT I + +A  + + F  +  +  T   ++G N E+++R L  VA
Sbjct: 384 PKGILFFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS-KWIG-NGEKMVRALFAVA 439


>gi|307244010|ref|ZP_07526129.1| endopeptidase La [Peptostreptococcus stomatis DSM 17678]
 gi|306492534|gb|EFM64568.1| endopeptidase La [Peptostreptococcus stomatis DSM 17678]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F+ +  E +   D Y  G  D K  +   L  R + + + A +        I L GP GV
Sbjct: 342 FDINKSEKILNEDHY--GLDDVKDRILEYLAVRKQSKNMKAPI--------ICLAGPPGV 391

Query: 65  GKTAISRRLARLAGAPFIKVEV 86
           GKT+I++ +AR  G PFI++ +
Sbjct: 392 GKTSIAKSVARAIGRPFIRISL 413


>gi|294790632|ref|ZP_06755790.1| putative cell division protein [Scardovia inopinata F0304]
 gi|294458529|gb|EFG26882.1| putative cell division protein [Scardovia inopinata F0304]
          Length = 774

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL G  G GKT ++R +A  AG PF  +  + F E+ +VG    + +RDL + A
Sbjct: 278 IPRGVLLYGQPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFEEA 334


>gi|225867632|ref|YP_002743580.1| cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700908|emb|CAW97578.1| putative cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|225464696|ref|XP_002277556.1| PREDICTED: hypothetical protein isoform 4 [Vitis vinifera]
          Length = 783

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 508 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 565


>gi|171317291|ref|ZP_02906488.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
 gi|171097552|gb|EDT42389.1| AAA ATPase central domain protein [Burkholderia ambifaria MEX-5]
          Length = 367

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAKLLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLT-AGWI 138


>gi|189521751|ref|XP_001923118.1| PREDICTED: paraplegin [Danio rerio]
          Length = 788

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI- 92
           L+N  R  QL A +     PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+ 
Sbjct: 319 LKNPDRYLQLGAKV-----PKGSLLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVI 373

Query: 93  -GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-------EERILDALV 139
            G     V  + ++    A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 374 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTNMSGFSNTEEEQTLNQLL 428


>gi|66357328|ref|XP_625842.1| 26S proteasome regulatory subunit 26b like AAA ATpase
           [Cryptosporidium parvum Iowa II]
 gi|46226879|gb|EAK87845.1| 26S proteasome regulatory subunit 26b like AAA ATpase
           [Cryptosporidium parvum Iowa II]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P  +LL GP G GKT +++ +A    A 
Sbjct: 154 IQKQEVREAVELPLVCPELYQQIGID-----PPTGVLLYGPPGTGKTMLAKAVANHTTAT 208

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 209 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 236


>gi|307942385|ref|ZP_07657736.1| AAA ATPase, central region [Roseibium sp. TrichSKD4]
 gi|307774671|gb|EFO33881.1| AAA ATPase, central region [Roseibium sp. TrichSKD4]
          Length = 369

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 40  RQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVG 96
           RQ L A L   L P + +L  GP GVGKT  +R +AR  G P I ++++    + +G  G
Sbjct: 109 RQNLGALLEAGLEPTRTVLFTGPPGVGKTLGARWVARELGVPLIILDLSAVMSSYLGRTG 168

Query: 97  RNVEQII 103
            N+  ++
Sbjct: 169 SNLRHVL 175


>gi|297803738|ref|XP_002869753.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315589|gb|EFH46012.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 933

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+
Sbjct: 450 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 489


>gi|302143742|emb|CBI22603.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 559 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 616


>gi|225426100|ref|XP_002276971.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 829

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 553 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 610


>gi|242019805|ref|XP_002430349.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212515473|gb|EEB17611.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 754

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 301 IPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSR-VRDMFAMA 357


>gi|120602576|ref|YP_966976.1| ATP-dependent Clp protease ATP-binding protein ClpA [Desulfovibrio
           vulgaris DP4]
 gi|120562805|gb|ABM28549.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris DP4]
          Length = 776

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           ++L + + GQ+ A   VA+  R+  R +   A    E  P  + L  GPTGVGKT ++R 
Sbjct: 451 NDLGKAVFGQEAA---VAVVARSILRAR---AGFGREDRPTGSFLFYGPTGVGKTELARS 504

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA+  G  F++ +++++ E   V R
Sbjct: 505 LAKRLGVAFLRYDMSEYMEKHAVSR 529


>gi|331684248|ref|ZP_08384840.1| ATP-dependent chaperone protein ClpB [Escherichia coli H299]
 gi|312947166|gb|ADR27993.1| protein disaggregation chaperone [Escherichia coli O83:H1 str. NRG
           857C]
 gi|331077863|gb|EGI49069.1| ATP-dependent chaperone protein ClpB [Escherichia coli H299]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|300853817|ref|YP_003778801.1| chaperone [Clostridium ljungdahlii DSM 13528]
 gi|300433932|gb|ADK13699.1| chaperone [Clostridium ljungdahlii DSM 13528]
          Length = 865

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 12/88 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ++A  AV+ A LR R       A ++D   P  + + +GPTGVGKT +++ 
Sbjct: 571 ELAKRVIGQKEAVTAVSNAVLRAR-------AGMKDPKRPIGSFIFLGPTGVGKTELAKT 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LAR    +    I+++++++ E   V R
Sbjct: 624 LARTLFDSEENIIRIDMSEYMEKYSVSR 651


>gi|302839083|ref|XP_002951099.1| hypothetical protein VOLCADRAFT_104954 [Volvox carteri f.
           nagariensis]
 gi|300263794|gb|EFJ47993.1| hypothetical protein VOLCADRAFT_104954 [Volvox carteri f.
           nagariensis]
          Length = 913

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL G  G GKT +++ LA  A  PF ++  T+FTE G VG    + +RDL   A
Sbjct: 532 PKGILLEGDPGTGKTLLAKALAGEAMVPFYQMSGTEFTE-GIVGLGAAR-VRDLFKRA 587


>gi|225464692|ref|XP_002277515.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 557 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 614


>gi|170765528|ref|ZP_02900339.1| ATP-dependent chaperone protein ClpB [Escherichia albertii TW07627]
 gi|170124674|gb|EDS93605.1| ATP-dependent chaperone protein ClpB [Escherichia albertii TW07627]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|85713408|ref|ZP_01044407.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
 gi|85692768|gb|EAQ30767.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 24/115 (20%)

Query: 10  REIVSELDR----YIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTG 63
           ++I+ +LDR     + GQ +A   ++ A+R +R       + L +E  P  + L  GPTG
Sbjct: 227 QDILKQLDRNLKMVVFGQDEAIDKLSSAIRLSR-------SGLGNEHTPIGSFLFAGPTG 279

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           VGKT ++++LA+  G   I+ +++++ E            GYVG +   ++ D V
Sbjct: 280 VGKTEVTQQLAKAMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAV 334


>gi|330718515|ref|ZP_08313115.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Leuconostoc fallax KCTC 3537]
          Length = 704

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLEGPPGTGKTLLAKAVAGEARVPFFSMSGSDFVEM-FVGVGASR-VRDLFENA 275


>gi|313157348|gb|EFR56771.1| negative regulator of genetic competence ClpC/MecB [Alistipes sp.
           HGB5]
          Length = 817

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRLA 74
           L R ++GQQ+A   +A  +R R R     A L+DE  P  + L VGPTGVGKT +++ ++
Sbjct: 514 LARRVVGQQEAVEKIARTIR-RSR-----AGLKDENRPIGVFLFVGPTGVGKTLLAKEVS 567

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +         I+++++++ E   V R
Sbjct: 568 KWLFDEHRGLIRIDMSEYGEKHNVAR 593


>gi|294828029|ref|NP_712285.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385876|gb|AAN49303.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 758

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA + G   I+ +++++ E   V R
Sbjct: 498 SFLFAGPTGVGKTELTRKLAEILGVELIRFDMSEYMEKHTVSR 540


>gi|290958665|ref|YP_003489847.1| chaperone ClpB [Streptomyces scabiei 87.22]
 gi|260648191|emb|CBG71299.1| chaperone ClpB [Streptomyces scabiei 87.22]
          Length = 871

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 571 ELGRRLIGQTEAVRAVSDAVR-RSR-----AGIADPDRPTGSFLFLGPTGVGKTELAKAL 624

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          I++++++++E   V R V
Sbjct: 625 ADFLFDDERAMIRIDMSEYSEKHSVARLV 653


>gi|259047952|ref|ZP_05738353.1| cell division protein FtsH [Granulicatella adiacens ATCC 49175]
 gi|259035372|gb|EEW36627.1| cell division protein FtsH [Granulicatella adiacens ATCC 49175]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 210 IPAGVLLEGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 266


>gi|261823152|ref|YP_003261258.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Pectobacterium
           wasabiae WPP163]
 gi|261607165|gb|ACX89651.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Pectobacterium
           wasabiae WPP163]
          Length = 313

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +P  I ++GPT  GKTA++  L        I V+   + K  +IG    + E+
Sbjct: 2   SDVEQPSLPPAIFIMGPTASGKTALAMALREYLPVELISVDSALIYKDMDIGTAKPSAEE 61

Query: 102 IIR------DLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
           + +      D++D A +    + RRD +RE A I A  RI   LVG T
Sbjct: 62  LAQAPHRLIDILDPAESYSAADFRRDALREMADITAAGRI-PLLVGGT 108


>gi|226226990|ref|YP_002761096.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gemmatimonas
           aurantiaca T-27]
 gi|226090181|dbj|BAH38626.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gemmatimonas
           aurantiaca T-27]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   ++GQ +A +A+A ++R R R     A L+D   P  + +  GPTGVGKT ++R L
Sbjct: 524 ELHGTVVGQDEAIKALARSIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELARAL 577

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A+   A     I+V+++++ E   V R
Sbjct: 578 AKFLFADTSALIRVDMSEYMEKFSVSR 604


>gi|225464694|ref|XP_002277491.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 831

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 553 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 610


>gi|225444572|ref|XP_002273189.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738493|emb|CBI27738.3| unnamed protein product [Vitis vinifera]
          Length = 425

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104
           PK +L  GP G GKT ++R +A   GA FI+V  ++     +G   R V QI R
Sbjct: 201 PKGVLFYGPPGTGKTLLARAVANRTGACFIRVIGSELVRRYVGEGARMVRQIFR 254


>gi|149278774|ref|ZP_01884909.1| ATP-dependent Clp protease, ATP-binding subunit [Pedobacter sp.
           BAL39]
 gi|149230393|gb|EDM35777.1| ATP-dependent Clp protease, ATP-binding subunit [Pedobacter sp.
           BAL39]
          Length = 844

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           IIGQ DA + +  A+      Q+  A L+D   P  + + +GPTGVGKT +++ LAR   
Sbjct: 531 IIGQDDAIKKLTKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKELARFMF 584

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
            +    I+++++++ E   V R V
Sbjct: 585 DSDDSLIQIDMSEYMEKFAVSRLV 608


>gi|153824206|ref|ZP_01976873.1| clpB protein [Vibrio cholerae B33]
 gi|126518271|gb|EAZ75496.1| clpB protein [Vibrio cholerae B33]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 153 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 206

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 207 NFLFDSEDAMVRVDMSEFMEKHSVARLV 234


>gi|90408366|ref|ZP_01216529.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychromonas
           sp. CNPT3]
 gi|90310529|gb|EAS38651.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychromonas
           sp. CNPT3]
          Length = 752

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)

Query: 47  LRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGY 94
           L DE  P  + L  GPTGVGKT ++++LA + G   ++ +++++ E            GY
Sbjct: 480 LTDEKKPVGSFLFAGPTGVGKTEVTQQLANILGVELLRFDMSEYMEKHTVSRLLGAPPGY 539

Query: 95  VGRNVEQIIRDLV 107
           VG     ++ D V
Sbjct: 540 VGHEQAGLLTDAV 552


>gi|39937144|ref|NP_949420.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
 gi|39651002|emb|CAE29525.1| AAA ATPase [Rhodopseudomonas palustris CGA009]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           PK +LL GP G GKT I+R +AR AG  F+ V   +  +  Y G + E + R   D 
Sbjct: 159 PKGVLLYGPPGCGKTLIARTVAREAGVYFLHVNGPEIIQKHY-GESEEMLRRIFADA 214



 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           P+ ILL GPTG GKT I R LA  +   FI V   +     +G   R +  + R     A
Sbjct: 432 PRGILLTGPTGTGKTLIVRALATQSDVNFIAVNGPELLSKWVGETERAIRDVFRKARQSA 491

Query: 111 INIVRESRRDE-VREQASINAEERILDALVGK 141
            +I+     D  V  +   +   RI D +VG+
Sbjct: 492 PSIIFFDEVDAIVASRGGDDGGARIGDRMVGQ 523


>gi|325288483|ref|YP_004264664.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963884|gb|ADY54663.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 841

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ++A  AVA ++R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 513 LHERVVGQEEAVSAVARSVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 566

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     I+V+++++ E   V R V
Sbjct: 567 EALFGDENSLIRVDMSEYMEKHAVSRMV 594


>gi|315302467|ref|ZP_07873317.1| negative regulator of genetic competence ClpC/MecB [Listeria
           ivanovii FSL F6-596]
 gi|313629167|gb|EFR97450.1| negative regulator of genetic competence ClpC/MecB [Listeria
           ivanovii FSL F6-596]
          Length = 721

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 21/99 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S L   +IGQ+ A   VA A+R R R       L+ +  P  + L VGPTGVGKT + R 
Sbjct: 421 SNLSGQVIGQEAAVNKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTELGRS 474

Query: 73  LAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           LAR L G     I++++++F E            GYVG 
Sbjct: 475 LARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 513


>gi|309799286|ref|ZP_07693534.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
 gi|308117131|gb|EFO54559.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|307711228|ref|ZP_07647650.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
 gi|307617190|gb|EFN96368.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|298291486|ref|YP_003693425.1| ATP-dependent Clp protease ATP-binding subunit clpA [Starkeya
           novella DSM 506]
 gi|296927997|gb|ADH88806.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Starkeya
           novella DSM 506]
          Length = 812

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R + GQ  A  A+A A++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 462 TTLKRVVYGQDKAIEALASAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQ 515

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 516 LASSLGVELLRFDMSEYMERHTISRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 568


>gi|293411983|ref|ZP_06654706.1| ATP-dependent chaperone ClpB [Escherichia coli B354]
 gi|291468754|gb|EFF11245.1| ATP-dependent chaperone ClpB [Escherichia coli B354]
          Length = 861

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 651


>gi|255531040|ref|YP_003091412.1| ATPase AAA-2 domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255344024|gb|ACU03350.1| ATPase AAA-2 domain protein [Pedobacter heparinus DSM 2366]
          Length = 846

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           IIGQ DA + +  A+      Q+  A L+D   P  + + +GPTGVGKT +++ LAR   
Sbjct: 532 IIGQDDAIKKLTKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKELARFMF 585

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
            +    I+++++++ E   V R V
Sbjct: 586 DSDDSLIQIDMSEYMEKFAVSRLV 609


>gi|289580977|ref|YP_003479443.1| ATPase AAA [Natrialba magadii ATCC 43099]
 gi|289530530|gb|ADD04881.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099]
          Length = 493

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101
           +L VGP G GKT+ ++ LAR    PF++V+++  T   +G   +NV++
Sbjct: 244 LLFVGPPGTGKTSTAQALARDMDLPFVEVKLSMITSQYLGETAKNVDK 291


>gi|164686582|ref|ZP_02210610.1| hypothetical protein CLOBAR_00174 [Clostridium bartlettii DSM
           16795]
 gi|164604311|gb|EDQ97776.1| hypothetical protein CLOBAR_00174 [Clostridium bartlettii DSM
           16795]
          Length = 815

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ++A +++A A+R R R     A ++D   P  + L +GPTGVGKT +S+ LA
Sbjct: 511 LHNRVVGQEEAIKSIATAIR-RAR-----AGIKDPSKPIGSFLFLGPTGVGKTELSKALA 564

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     ++++++++ E   V R
Sbjct: 565 EAQFGDENQIVRIDMSEYMEKHTVSR 590


>gi|116333185|ref|YP_794712.1| ATP-dependent Zn protease [Lactobacillus brevis ATCC 367]
 gi|116098532|gb|ABJ63681.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Lactobacillus brevis ATCC 367]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 220 IPSGVLLEGPPGTGKTLLAKAVAGEAAVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 276


>gi|88607892|ref|YP_504852.1| ATP-dependent chaperone protein ClpB [Anaplasma phagocytophilum HZ]
 gi|88598955|gb|ABD44425.1| ATP-dependent chaperone protein ClpB [Anaplasma phagocytophilum HZ]
          Length = 859

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ  A  AV+ A+R R R     A ++D   P  + L +GPTGVGKT +++ L
Sbjct: 565 ELKKTVIGQDSAVAAVSNAVR-RSR-----AGVQDAQRPMGSFLFLGPTGVGKTELTKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++    + +  ++ ++++F E   V +
Sbjct: 619 SKFLFDSSSALLRFDMSEFMEKHSVAK 645


>gi|26554472|ref|NP_758406.1| cell division protein FtsH [Mycoplasma penetrans HF-2]
 gi|81747354|sp|Q8EUA6|FTSH_MYCPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|26454482|dbj|BAC44810.1| cell division protein FtsH [Mycoplasma penetrans HF-2]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ++L GP G GKT +++ +A  A  PF +V  + F ++  VG   ++ +RDL + A+
Sbjct: 339 VPKGVILYGPPGTGKTLLAKAVAGEAKVPFFQVSGSAFEDM-LVGVGAKR-VRDLFNKAV 396


>gi|323336287|gb|EGA77558.1| Yta12p [Saccharomyces cerevisiae Vin13]
          Length = 826

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|319940220|ref|ZP_08014573.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
 gi|319810691|gb|EFW07021.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|311694971|gb|ADP97844.1| ATP-dependent Clp protease ATP-binding subunit ClpA [marine
           bacterium HP15]
          Length = 756

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++    R  L A  + E      L  GPTGVGKT +
Sbjct: 453 RNLERDLKMTVFGQDPAIESLSTAIK--LARAGLKAPEKPE---GAFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA++ G   ++ +++++ E   V R
Sbjct: 508 TKQLAKVLGIELVRFDMSEYMERHTVSR 535


>gi|331213285|ref|XP_003319324.1| midasin [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298314|gb|EFP74905.1| midasin [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 5742

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 56   ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG-YVG 96
            +L+ GPT  GKT+I   +ARL G PF+++   + T+I  Y+G
Sbjct: 1442 VLIQGPTSSGKTSIVAYIARLTGHPFVRINNHEHTDIQEYIG 1483


>gi|288920479|ref|ZP_06414787.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
 gi|288348131|gb|EFC82400.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
          Length = 834

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ+ A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRVIGQEQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A          I+++++++ E   V R V
Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592


>gi|254573148|ref|XP_002493683.1| Mitochondrial protein involved in sorting of proteins in the
           mitochondria [Pichia pastoris GS115]
 gi|238033482|emb|CAY71504.1| Mitochondrial protein involved in sorting of proteins in the
           mitochondria [Pichia pastoris GS115]
 gi|328354491|emb|CCA40888.1| Protein MSP1 [Pichia pastoris CBS 7435]
          Length = 358

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT +++ LA  +GA FI + ++   +  Y
Sbjct: 125 PKGVLLYGPPGCGKTMLAKALASESGANFISIRMSSVMDKWY 166


>gi|258404834|ref|YP_003197576.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
 gi|257797061|gb|ACV67998.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
          Length = 618

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           PK  LL+GP G GKT ++R +A  A  PF  +  + F E+ +VG
Sbjct: 210 PKGCLLIGPPGTGKTLLARAVAGEAEVPFYSITGSDFMEM-FVG 252


>gi|225436170|ref|XP_002266075.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296090151|emb|CBI39970.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           P  +LL GP G GKT +++ +A  AG PF ++  ++F E+
Sbjct: 428 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 467


>gi|225434891|ref|XP_002283273.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297746048|emb|CBI16104.3| unnamed protein product [Vitis vinifera]
          Length = 820

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +  PF+ +  + F E+ 
Sbjct: 351 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEM- 404

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 405 FVGVGPSRVRNLFQEARQCAPSIIFI 430


>gi|170747221|ref|YP_001753481.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653743|gb|ACB22798.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium radiotolerans JCM 2831]
          Length = 828

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 QHLTENLKRVVYGQPNAIEALTSAIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 574


>gi|188584528|ref|YP_001927973.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium populi BJ001]
 gi|179348026|gb|ACB83438.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium populi BJ001]
          Length = 832

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 574


>gi|187918641|ref|YP_001884207.1| cell division protein FtsH [Borrelia hermsii DAH]
 gi|119861489|gb|AAX17284.1| cell division protein FtsH [Borrelia hermsii DAH]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  AG  F  +  + F E+ +VG    + +RDL D A
Sbjct: 205 IPKGVLLVGSPGTGKTLLAKAVAGEAGVNFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 261


>gi|115708806|ref|XP_001200814.1| PREDICTED: similar to paraplegin, partial [Strongylocentrotus
           purpuratus]
 gi|115762318|ref|XP_787789.2| PREDICTED: similar to paraplegin, partial [Strongylocentrotus
           purpuratus]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG 96
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G
Sbjct: 222 VPKGALLLGPPGCGKTLLAKAVATEANVPFLAMAGSEFVEMIGGLG 267


>gi|73669293|ref|YP_305308.1| AAA ATPase family protein [Methanosarcina barkeri str. Fusaro]
 gi|72396455|gb|AAZ70728.1| AAA family ATPase [Methanosarcina barkeri str. Fusaro]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ+ AK+   +  R     ++       +  P+NIL  GP+G GKT +++ LA     
Sbjct: 125 VIGQELAKQKCRLIERFLEEPERF-----GKWAPRNILFFGPSGTGKTMLAKALANKTDV 179

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
             I V+ T+   IG YVG    QI
Sbjct: 180 LIIPVKATQL--IGEYVGEGARQI 201


>gi|307705919|ref|ZP_07642757.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
 gi|307620580|gb|EFN99678.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|297623567|ref|YP_003705001.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297164747|gb|ADI14458.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 185 IPHGVLMVGPPGSGKTHLAKAVAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDLFESA 241


>gi|289166921|ref|YP_003445188.1| cell-division protein [Streptococcus mitis B6]
 gi|288906486|emb|CBJ21316.1| cell-division protein [Streptococcus mitis B6]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|226489468|emb|CAX75878.1| 26S proteasome regulatory subunit T3 [Schistosoma japonicum]
          Length = 266

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 20  IQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 74

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 75  FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 102


>gi|207342330|gb|EDZ70121.1| YMR089Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|195125637|ref|XP_002007284.1| GI12851 [Drosophila mojavensis]
 gi|193918893|gb|EDW17760.1| GI12851 [Drosophila mojavensis]
          Length = 614

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 51  LMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           L+P + +LL GP G GKT ++R +A     P ++V  T+   IG +    E+ IRD+ + 
Sbjct: 296 LLPSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATEL--IGGISGESEERIRDVFEQ 353

Query: 110 AIN 112
           AI+
Sbjct: 354 AID 356


>gi|156550903|ref|XP_001602630.1| PREDICTED: similar to aaa atpase [Nasonia vitripennis]
          Length = 550

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  + + F  +  +  T   +VG   E+++R L  VA
Sbjct: 306 PKGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS-KWVGEG-EKMVRALFAVA 361


>gi|163854198|ref|YP_001642241.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium extorquens PA1]
 gi|218533143|ref|YP_002423959.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Methylobacterium chloromethanicum CM4]
 gi|254564166|ref|YP_003071261.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens DM4]
 gi|163665803|gb|ABY33170.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium extorquens PA1]
 gi|218525446|gb|ACK86031.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium chloromethanicum CM4]
 gi|254271444|emb|CAX27459.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens DM4]
          Length = 827

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 574


>gi|149038453|gb|EDL92813.1| AFG3(ATPase family gene 3)-like 1 (yeast) (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 193 LKNPKQYQDLGAKI-----PKGAMLTGPPGTGKTLLAKATAGEAKVPFITVNGSEFLEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 247 FVGVGPAR-VRDMFAMA 262


>gi|116334137|ref|YP_795664.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus brevis ATCC 367]
 gi|116099484|gb|ABJ64633.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus brevis ATCC 367]
          Length = 745

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 23/103 (22%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           + + S+L++++IGQ +A   VA A+R NR         L     P  + L VGPTGVGKT
Sbjct: 432 KSLASDLEKHVIGQNEAVDKVARAIRRNRI-------GLNGTGRPIGSFLFVGPTGVGKT 484

Query: 68  AISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVG 96
            ++++LA  L G+    I+ +++++ E            GYVG
Sbjct: 485 ELAKQLANELFGSQEAMIRFDMSEYMEPHSISKLIGSPPGYVG 527


>gi|162287285|ref|NP_001104667.1| AFG3-like protein 2 [Danio rerio]
 gi|161612073|gb|AAI55656.1| Si:ch211-12e1.4 protein [Danio rerio]
 gi|169146790|emb|CAQ14927.1| novel protein similar to vertebrate AFG3 ATPase family gene 3-like
           2 (yeast) (AFG3L2) [Danio rerio]
          Length = 800

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 322 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 375

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 376 FVGVGPAR-VRDLFVLA 391


>gi|313241239|emb|CBY33520.1| unnamed protein product [Oikopleura dioica]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 164 KQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 218

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|295401294|ref|ZP_06811266.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976701|gb|EFG52307.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 720

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L + +IGQ++A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 418 KHLEENLAKKVIGQEEAVKKVAKAIR-RSR-----AGLKAKHRPIGSFLFVGPTGVGKTE 471

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVG 96
           +++ LA  L G+    I+++++++ E            GYVG
Sbjct: 472 LAKTLAEELFGSKDAMIRLDMSEYMEKHSVSKLIGSPPGYVG 513


>gi|255969567|gb|ACU45413.1| ATP-dependent Zn protease [Peanut witches'-broom phytoplasma]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG  F     ++F E  YVG    + IR+L   A
Sbjct: 225 IPKGVLLSGPPGTGKTLLAKAVAGEAGVAFFATSGSEFVE-KYVGVGASR-IRNLFQKA 281


>gi|262281630|ref|ZP_06059399.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
 gi|262262084|gb|EEY80781.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
          Length = 660

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|311743343|ref|ZP_07717150.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
           marinum DSM 15272]
 gi|311313411|gb|EFQ83321.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
           marinum DSM 15272]
          Length = 837

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A +A++ A+R R R     A L+D   P  + +  GP+GVGKT +S+ 
Sbjct: 508 AELGKRVIGQHEAIKALSRAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTWLSKT 561

Query: 73  LARLAGA---PFIKVEVTKFTEIGYVGR 97
           LA          I++++++++E   V R
Sbjct: 562 LANFLFGDDDALIQLDMSEYSEKHTVSR 589


>gi|229512401|ref|ZP_04401875.1| ClpB protein [Vibrio cholerae TMA 21]
 gi|229350551|gb|EEO15497.1| ClpB protein [Vibrio cholerae TMA 21]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|254465877|ref|ZP_05079288.1| ATP-dependent chaperone ClpB [Rhodobacterales bacterium Y4I]
 gi|206686785|gb|EDZ47267.1| ATP-dependent chaperone ClpB [Rhodobacterales bacterium Y4I]
          Length = 872

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ  A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 564 ELHRRVIGQNTAVTAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 617

Query: 74  A 74
           A
Sbjct: 618 A 618


>gi|170056671|ref|XP_001864135.1| paraplegin [Culex quinquefasciatus]
 gi|167876422|gb|EDS39805.1| paraplegin [Culex quinquefasciatus]
          Length = 754

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK+ V      L+   R Q+L A +     PK  LL+GP G GKT +++ +A  
Sbjct: 286 VAGLQEAKQEVMEFVDYLKAPDRYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 340

Query: 77  AGAPFIKVEVTKFTE-IGYVG 96
           A  PF+ +  ++F E IG +G
Sbjct: 341 AQVPFLSMNGSEFIEMIGGLG 361


>gi|156839354|ref|XP_001643369.1| hypothetical protein Kpol_467p23 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113976|gb|EDO15511.1| hypothetical protein Kpol_467p23 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 859

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 414 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 470


>gi|149038454|gb|EDL92814.1| AFG3(ATPase family gene 3)-like 1 (yeast) (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 193 LKNPKQYQDLGAKI-----PKGAMLTGPPGTGKTLLAKATAGEAKVPFITVNGSEFLEM- 246

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 247 FVGVGPAR-VRDMFAMA 262


>gi|124262837|ref|YP_001023307.1| putative cell division protein [Methylibium petroleiphilum PM1]
 gi|124262083|gb|ABM97072.1| putative cell division protein [Methylibium petroleiphilum PM1]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           P+ +L+ GP+G GKT +++ LA   GA FI V+ + FT +
Sbjct: 228 PRGVLMTGPSGTGKTLLAKALAGETGARFIAVDGSYFTSM 267


>gi|37678899|ref|NP_933508.1| clpB protein [Vibrio vulnificus YJ016]
 gi|54035791|sp|Q7MNK1|CLPB_VIBVY RecName: Full=Chaperone protein ClpB
 gi|37197640|dbj|BAC93479.1| clpB protein [Vibrio vulnificus YJ016]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|159186054|ref|NP_356471.2| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|54035788|sp|Q7CU92|CLPB_AGRT5 RecName: Full=Chaperone protein ClpB
 gi|159141188|gb|AAK89256.2| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 874

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 ELAKSVVGQGEAVQAVSKAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKSL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 621 ARFLFDDETAMVRLDMSEYMEKHSVAR 647


>gi|223933448|ref|ZP_03625433.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
 gi|302023122|ref|ZP_07248333.1| cell division protease FtsH [Streptococcus suis 05HAS68]
 gi|223897886|gb|EEF64262.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|302809398|ref|XP_002986392.1| hypothetical protein SELMODRAFT_425290 [Selaginella moellendorffii]
 gi|300145928|gb|EFJ12601.1| hypothetical protein SELMODRAFT_425290 [Selaginella moellendorffii]
          Length = 336

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P    +E+    + +Q+ + AV + L +    +QL  D      PK +LL G  G G
Sbjct: 62  SLRPEVTYAEIGGLELQKQEIREAVELPLTHPELYRQLGVD-----PPKGVLLYGAPGTG 116

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVG---------RNVEQ---IIRDLVDVA 110
           KT + + +A    A FI+V  ++F +  Y+G         RNV Q   ++RD+ ++A
Sbjct: 117 KTMLVKAVAHHTSAAFIRVVASEFVQ-KYLGELSTGERSCRNVVQGPRMMRDVFNLA 172


>gi|261212183|ref|ZP_05926469.1| ClpB protein [Vibrio sp. RC341]
 gi|260838791|gb|EEX65442.1| ClpB protein [Vibrio sp. RC341]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|255325858|ref|ZP_05366950.1| negative regulator of genetic competence ClpC/mecB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297070|gb|EET76395.1| negative regulator of genetic competence ClpC/mecB [Corynebacterium
           tuberculostearicum SK141]
          Length = 922

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 9/77 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + IIGQ +A ++V+ A+R R R     A L+D   P  + +
Sbjct: 517 LKLTEKESNRLLNMEEELHKRIIGQDEAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 570

Query: 58  LVGPTGVGKTAISRRLA 74
             GP+GVGKT +S+ LA
Sbjct: 571 FAGPSGVGKTELSKSLA 587


>gi|238921070|ref|YP_002934585.1| protein disaggregation chaperone [Edwardsiella ictaluri 93-146]
 gi|238870639|gb|ACR70350.1| ATP-dependent chaperone protein ClpB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 GELHKRVVGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|170592082|ref|XP_001900798.1| 26S proteasome subunit P45 family protein [Brugia malayi]
 gi|158591665|gb|EDP30269.1| 26S proteasome subunit P45 family protein [Brugia malayi]
          Length = 878

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    QQ+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 190 MQKQEVREAVELPLTHGELYQQIGID-----PPRGVLMYGPPGCGKTMLAKAVAAHTTAS 244

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 245 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 272


>gi|157151579|ref|YP_001451358.1| cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076373|gb|ABV11056.1| Cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 660

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|151946245|gb|EDN64476.1| ATPase [Saccharomyces cerevisiae YJM789]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|148993572|ref|ZP_01823043.1| cell division protein FtsH [Streptococcus pneumoniae SP9-BS68]
 gi|168489348|ref|ZP_02713547.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae SP195]
 gi|147927793|gb|EDK78815.1| cell division protein FtsH [Streptococcus pneumoniae SP9-BS68]
 gi|183572246|gb|EDT92774.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae SP195]
 gi|332071716|gb|EGI82209.1| cell division protease ftsH [Streptococcus pneumoniae GA17570]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|531754|emb|CAA56955.1| YTA12 (=RCA1) [Saccharomyces cerevisiae]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|508233|gb|AAA62606.1| Rca1p [Saccharomyces cerevisiae]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|46580013|ref|YP_010821.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449429|gb|AAS96080.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233988|gb|ADP86842.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris RCH1]
          Length = 776

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           ++L + + GQ+ A   VA+  R+  R +   A    E  P  + L  GPTGVGKT ++R 
Sbjct: 451 NDLGKAVFGQEAA---VAVVARSILRAR---AGFGREDRPTGSFLFYGPTGVGKTELARS 504

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA+  G  F++ +++++ E   V R
Sbjct: 505 LAKRLGVAFLRYDMSEYMEKHAVSR 529


>gi|73668075|ref|YP_304090.1| cell division cycle protein 48-like protein [Methanosarcina barkeri
           str. Fusaro]
 gi|72395237|gb|AAZ69510.1| cell division cycle protein 48-like protein [Methanosarcina barkeri
           str. Fusaro]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
           +L VGP G GKT+++R L+     PF++V+++  T+  +G   +N++++
Sbjct: 213 LLFVGPPGTGKTSVARALSERLSIPFVEVKLSMITDQYLGETAKNIDRV 261


>gi|6323736|ref|NP_013807.1| Yta12p [Saccharomyces cerevisiae S288c]
 gi|1710045|sp|P40341|YTA12_YEAST RecName: Full=Mitochondrial respiratory chain complexes assembly
           protein YTA12; AltName: Full=Tat-binding homolog 12
 gi|807972|emb|CAA89236.1| Rca1p [Saccharomyces cerevisiae]
 gi|285814091|tpg|DAA09986.1| TPA: Yta12p [Saccharomyces cerevisiae S288c]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|15920718|ref|NP_376387.1| hypothetical protein ST0502 [Sulfolobus tokodaii str. 7]
 gi|15621501|dbj|BAB65496.1| 383aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 16/83 (19%)

Query: 9  PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
          P++ V  L    IG+++  + + +AL ++                ++++L+G  G  K+A
Sbjct: 11 PKKFVELLSAPFIGREEEAKVITLALLSK----------------EHVILIGEPGTAKSA 54

Query: 69 ISRRLARLAGAPFIKVEVTKFTE 91
          ++RR A L  A F    +TK+TE
Sbjct: 55 LARRAAELLNAKFFMYLLTKYTE 77


>gi|15899962|ref|NP_344566.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
 gi|18266790|sp|O69076|FTSH_STRPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|14971477|gb|AAK74206.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|116621451|ref|YP_823607.1| ATPase [Candidatus Solibacter usitatus Ellin6076]
 gi|116224613|gb|ABJ83322.1| ATPase AAA-2 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 883

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 12/85 (14%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA 77
           +IGQ +A R VA A LRNR       A L D   P  + + +GPTGVGKT + R LA+  
Sbjct: 574 VIGQDEAVRLVANAILRNR-------AGLGDPQRPIGSFIFLGPTGVGKTELVRALAQYL 626

Query: 78  ---GAPFIKVEVTKFTEIGYVGRNV 99
                  I+V+++++ E   V R V
Sbjct: 627 FDDSKAMIRVDMSEYMEKHAVARMV 651


>gi|323332054|gb|EGA73465.1| Yta12p [Saccharomyces cerevisiae AWRI796]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|323307733|gb|EGA60996.1| Yta12p [Saccharomyces cerevisiae FostersO]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|322388492|ref|ZP_08062095.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
 gi|321140805|gb|EFX36307.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|313231730|emb|CBY08843.1| unnamed protein product [Oikopleura dioica]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 164 KQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 218

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|309810056|ref|ZP_07703902.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312872141|ref|ZP_07732214.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325913392|ref|ZP_08175759.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 60-B]
 gi|329919675|ref|ZP_08276653.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 1401G]
 gi|308169555|gb|EFO71602.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311092225|gb|EFQ50596.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325477318|gb|EGC80463.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 60-B]
 gi|328937327|gb|EGG33751.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 1401G]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 415 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 466

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 467 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 518

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 519 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 577

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ + + ++S
Sbjct: 578 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFEPLSKES 625

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 626 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 658


>gi|301793338|emb|CBW35697.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae INV104]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|294634722|ref|ZP_06713253.1| ATP-dependent chaperone protein ClpB [Edwardsiella tarda ATCC
           23685]
 gi|291091852|gb|EFE24413.1| ATP-dependent chaperone protein ClpB [Edwardsiella tarda ATCC
           23685]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHKRVVGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|258620376|ref|ZP_05715414.1| clpB protein [Vibrio mimicus VM573]
 gi|258587255|gb|EEW11966.1| clpB protein [Vibrio mimicus VM573]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|256273497|gb|EEU08431.1| Yta12p [Saccharomyces cerevisiae JAY291]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|225426102|ref|XP_002276951.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 797

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 521 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 578


>gi|146317677|ref|YP_001197389.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|146319867|ref|YP_001199578.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|253750938|ref|YP_003024079.1| cell division protease FtsH [Streptococcus suis SC84]
 gi|253752837|ref|YP_003025977.1| cell division protease FtsH [Streptococcus suis P1/7]
 gi|253754662|ref|YP_003027802.1| cell division protease FtsH [Streptococcus suis BM407]
 gi|145688483|gb|ABP88989.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|145690673|gb|ABP91178.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|251815227|emb|CAZ50791.1| putative cell division protease FtsH [Streptococcus suis SC84]
 gi|251817126|emb|CAZ54847.1| putative cell division protease FtsH [Streptococcus suis BM407]
 gi|251819082|emb|CAR44108.1| putative cell division protease FtsH [Streptococcus suis P1/7]
 gi|292557479|gb|ADE30480.1| Peptidase M41, FtsH [Streptococcus suis GZ1]
 gi|319757187|gb|ADV69129.1| ATP-dependent Zn protease [Streptococcus suis JS14]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 264


>gi|111658618|ref|ZP_01409268.1| hypothetical protein SpneT_02000208 [Streptococcus pneumoniae
           TIGR4]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 197 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 240


>gi|56416863|ref|YP_153937.1| ATP-dependent Clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222475228|ref|YP_002563644.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Florida]
 gi|56388095|gb|AAV86682.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419365|gb|ACM49388.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Florida]
          Length = 781

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   +  A+R         A LR    P  + LL GPTGVGKT + ++LA
Sbjct: 480 LKQVIFGQDAAISQIVDAIR------IAKAGLRSHQKPLASYLLAGPTGVGKTELVKQLA 533

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNV 99
           +  G   ++ +++++ E   V R +
Sbjct: 534 KNMGMKLVRFDMSEYMESHTVARMI 558


>gi|45185737|ref|NP_983453.1| ACR050Cp [Ashbya gossypii ATCC 10895]
 gi|44981492|gb|AAS51277.1| ACR050Cp [Ashbya gossypii ATCC 10895]
          Length = 475

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 251 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 306


>gi|74212059|dbj|BAE40194.1| unnamed protein product [Mus musculus]
          Length = 584

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 332 IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 388


>gi|56965211|ref|YP_176943.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
           clausii KSM-K16]
 gi|56911455|dbj|BAD65982.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
           clausii KSM-K16]
          Length = 700

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 20/101 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L   +IGQ++A   VA A++ R R     A L+    P + L VGPTGVGKT +
Sbjct: 405 KDLANRLAAKVIGQEEAVDKVAKAVK-RSR-----AGLKAGNRPISFLFVGPTGVGKTEL 458

Query: 70  SRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +++LA+         I++++++F E            GYVG
Sbjct: 459 TKQLAQEVYGKKESMIRLDMSEFMEKHSVSKLIGSPPGYVG 499


>gi|332982904|ref|YP_004464345.1| ATPase AAA-2 domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332700582|gb|AEE97523.1| ATPase AAA-2 domain protein [Mahella australiensis 50-1 BON]
          Length = 855

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + ++GQ +A +AV+ A+R R R       L+D   P  + + +GPTGVGKT ++R 
Sbjct: 561 GELHKRVVGQDEAVKAVSEAVR-RAR-----TGLKDPNRPIGSFIFLGPTGVGKTELARA 614

Query: 73  LARLAGA---PFIKVEVTKFTEIGYVGR 97
           LA          I+++++++ E   V R
Sbjct: 615 LAEFLFGDEDAMIRIDMSEYMEKHTVSR 642


>gi|298490462|ref|YP_003720639.1| ATP-dependent chaperone ClpB ['Nostoc azollae' 0708]
 gi|298232380|gb|ADI63516.1| ATP-dependent chaperone ClpB ['Nostoc azollae' 0708]
          Length = 894

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S R+ + +L+ Y    +IGQ++   AV+ A+R R R     A ++D   P  + L +GPT
Sbjct: 568 SERQKLLKLESYLHERVIGQEEGVSAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPT 621

Query: 63  GVGKTAISRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           GVGKT ++R LA+    +    ++++++++ E   V R V
Sbjct: 622 GVGKTELARALAQFLFDSDDALLRLDMSEYMEKHSVSRLV 661


>gi|291523676|emb|CBK81969.1| ATPases with chaperone activity, ATP-binding subunit [Coprococcus
           catus GD/7]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AVA A+R R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 512 LHERVIGQEEAVSAVAKAIR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 565

Query: 75  RLAGA---PFIKVEVTKFTE-----------IGYVG 96
                     I+V+++++ E            GYVG
Sbjct: 566 EAMFGKEDAMIRVDMSEYMEKHSVSKLIGSPPGYVG 601


>gi|281202482|gb|EFA76684.1| putative ATPase [Polysphondylium pallidum PN500]
          Length = 869

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIR 104
           P+ +LL GP G GKT +S+ +A  A A FI V +++    EIG   + + +I R
Sbjct: 633 PRGVLLYGPPGTGKTLLSKAVAFEARANFIAVNISEVIHGEIGESEKTIAEIFR 686


>gi|227534738|ref|ZP_03964787.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|301066806|ref|YP_003788829.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|227187494|gb|EEI67561.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|300439213|gb|ADK18979.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus casei str. Zhang]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 433 KNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 484

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 485 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 528


>gi|225855748|ref|YP_002737259.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
 gi|225724440|gb|ACO20292.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|190408318|gb|EDV11583.1| hypothetical protein SCRG_01979 [Saccharomyces cerevisiae RM11-1a]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|148244954|ref|YP_001219648.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326781|dbj|BAF61924.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 740

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 18/114 (15%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           F  + + SEL   + GQ  A  +++ A++ +R    Q+   +       + L  GPTGVG
Sbjct: 441 FLLKNLESELKLGVFGQDRALDSLSTAIKLSRSGLAQVDKPI------GSFLFAGPTGVG 494

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           KT I ++LAR+ G   ++ +++++ E            GYVG +   ++ ++V+
Sbjct: 495 KTEICKQLARIMGIKLLRFDMSEYGERHSVSKFIGSPPGYVGYDKGGLLTEVVN 548


>gi|126666667|ref|ZP_01737644.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
 gi|126628712|gb|EAZ99332.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 36  LHKRVIGQNEAVEAVANAVR-RSR-----AGLSDPHRPNGSFLFLGPTGVGKTELCKALA 89

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 90  SFLFDTDDAMVRIDMSEFMEKHSVAR 115


>gi|126697592|ref|YP_001086489.1| ATP-dependent Clp protease [Clostridium difficile 630]
 gi|254973677|ref|ZP_05270149.1| ATP-dependent Clp protease [Clostridium difficile QCD-66c26]
 gi|255091069|ref|ZP_05320547.1| ATP-dependent Clp protease [Clostridium difficile CIP 107932]
 gi|255099184|ref|ZP_05328161.1| ATP-dependent Clp protease [Clostridium difficile QCD-63q42]
 gi|255304967|ref|ZP_05349139.1| ATP-dependent Clp protease [Clostridium difficile ATCC 43255]
 gi|255312722|ref|ZP_05354305.1| ATP-dependent Clp protease [Clostridium difficile QCD-76w55]
 gi|255515482|ref|ZP_05383158.1| ATP-dependent Clp protease [Clostridium difficile QCD-97b34]
 gi|255648575|ref|ZP_05395477.1| ATP-dependent Clp protease [Clostridium difficile QCD-37x79]
 gi|306518705|ref|ZP_07405052.1| ATP-dependent Clp protease [Clostridium difficile QCD-32g58]
 gi|115249029|emb|CAJ66840.1| class III stress response-related ATPase, AAA+ superfamily
           [Clostridium difficile]
          Length = 815

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+ A ++++ A+R R R     A L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 511 LHNRVIGQEQAVKSISKAIR-RSR-----AGLKDPNRPIGSFLFLGPTGVGKTELSKALA 564

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
            +        I+++++++ E   V R
Sbjct: 565 EVQFGDENQIIRIDMSEYMEKHAVSR 590


>gi|312873593|ref|ZP_07733640.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2052A-d]
 gi|312875023|ref|ZP_07735041.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089418|gb|EFQ47844.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311090846|gb|EFQ49243.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2052A-d]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 415 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 466

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 467 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 518

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 519 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 577

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ + + ++S
Sbjct: 578 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFEPLSKES 625

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 626 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 658


>gi|309806616|ref|ZP_07700612.1| chaperone protein ClpB [Lactobacillus iners LactinV 03V1-b]
 gi|308166921|gb|EFO69104.1| chaperone protein ClpB [Lactobacillus iners LactinV 03V1-b]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 415 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 466

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 467 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 518

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 519 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 577

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ + + ++S
Sbjct: 578 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFEPLSKES 625

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            IQ+V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 626 LIQIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 658


>gi|269955171|ref|YP_003324960.1| ATPase AAA-2 domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303852|gb|ACZ29402.1| ATPase AAA-2 domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 852

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
           +KLT   S R   +  EL + ++GQ+ A +A++ A+R R R     A L+D   P  + +
Sbjct: 493 VKLTEEESGRLLRMEEELHKRVVGQEAAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546

Query: 58  LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA          I++++++F+E   V R
Sbjct: 547 FAGPTGVGKTELAKALAEFLFGDEDALIQLDMSEFSEKHTVSR 589


>gi|262172214|ref|ZP_06039892.1| ClpB protein [Vibrio mimicus MB-451]
 gi|261893290|gb|EEY39276.1| ClpB protein [Vibrio mimicus MB-451]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|229525361|ref|ZP_04414766.1| ClpB protein [Vibrio cholerae bv. albensis VL426]
 gi|229338942|gb|EEO03959.1| ClpB protein [Vibrio cholerae bv. albensis VL426]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|221230961|ref|YP_002510113.1| cell division protease FtsH [Streptococcus pneumoniae ATCC 700669]
 gi|225853624|ref|YP_002735136.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae JJA]
 gi|220673421|emb|CAR67879.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae ATCC 700669]
 gi|225722317|gb|ACO18170.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae JJA]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|170718829|ref|YP_001783422.1| ATPase [Haemophilus somnus 2336]
 gi|168826958|gb|ACA32329.1| ATPase AAA-2 domain protein [Haemophilus somnus 2336]
          Length = 856

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHKRVVGQSEAVVAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 617

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          +++++++F E   V R V
Sbjct: 618 LANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|167625066|ref|YP_001675360.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
 gi|167355088|gb|ABZ77701.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LLVGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLLVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|157376705|ref|YP_001475305.1| chaperone endopeptidase Clp ATP-binding chain B,ClpB [Shewanella
           sediminis HAW-EB3]
 gi|157319079|gb|ABV38177.1| chaperone endopeptidase Clp ATP-binding chain B,ClpB [Shewanella
           sediminis HAW-EB3]
          Length = 820

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 11/62 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRW--RRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L + IIGQQDA  AVA A+R NR    R   P          + L +GPTGVGKT +++ 
Sbjct: 512 LHKRIIGQQDAVSAVANAIRRNRTGINRSHRPIG--------SFLFLGPTGVGKTELAKA 563

Query: 73  LA 74
           LA
Sbjct: 564 LA 565


>gi|153801889|ref|ZP_01956475.1| clpB protein [Vibrio cholerae MZO-3]
 gi|229519981|ref|ZP_04409411.1| ClpB protein [Vibrio cholerae TM 11079-80]
 gi|124122600|gb|EAY41343.1| clpB protein [Vibrio cholerae MZO-3]
 gi|229343033|gb|EEO08021.1| ClpB protein [Vibrio cholerae TM 11079-80]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|51013649|gb|AAT93118.1| YMR089C [Saccharomyces cerevisiae]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|58336617|ref|YP_193202.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|58253934|gb|AAV42171.1| cell division protein [Lactobacillus acidophilus NCFM]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFSNA 281


>gi|15640730|ref|NP_230360.1| clpB protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587768|ref|ZP_01677528.1| clpB protein [Vibrio cholerae 2740-80]
 gi|227080891|ref|YP_002809442.1| clpB protein [Vibrio cholerae M66-2]
 gi|229505671|ref|ZP_04395181.1| ClpB protein [Vibrio cholerae BX 330286]
 gi|229508756|ref|ZP_04398249.1| ClpB protein [Vibrio cholerae B33]
 gi|229519494|ref|ZP_04408937.1| ClpB protein [Vibrio cholerae RC9]
 gi|229608689|ref|YP_002879337.1| ClpB protein [Vibrio cholerae MJ-1236]
 gi|254851041|ref|ZP_05240391.1| chaperone protein clpB [Vibrio cholerae MO10]
 gi|255743832|ref|ZP_05417788.1| ClpB protein [Vibrio cholera CIRS 101]
 gi|262156051|ref|ZP_06029170.1| ClpB protein [Vibrio cholerae INDRE 91/1]
 gi|54035907|sp|Q9KU18|CLPB_VIBCH RecName: Full=Chaperone protein ClpB
 gi|9655153|gb|AAF93876.1| clpB protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547995|gb|EAX58075.1| clpB protein [Vibrio cholerae 2740-80]
 gi|227008779|gb|ACP04991.1| clpB protein [Vibrio cholerae M66-2]
 gi|229344183|gb|EEO09158.1| ClpB protein [Vibrio cholerae RC9]
 gi|229354280|gb|EEO19210.1| ClpB protein [Vibrio cholerae B33]
 gi|229357894|gb|EEO22811.1| ClpB protein [Vibrio cholerae BX 330286]
 gi|229371344|gb|ACQ61767.1| ClpB protein [Vibrio cholerae MJ-1236]
 gi|254846746|gb|EET25160.1| chaperone protein clpB [Vibrio cholerae MO10]
 gi|255738463|gb|EET93852.1| ClpB protein [Vibrio cholera CIRS 101]
 gi|262030087|gb|EEY48732.1| ClpB protein [Vibrio cholerae INDRE 91/1]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|330831864|ref|YP_004400689.1| cell division protease FtsH [Streptococcus suis ST3]
 gi|329306087|gb|AEB80503.1| cell division protease FtsH [Streptococcus suis ST3]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|328852147|gb|EGG01295.1| hypothetical protein MELLADRAFT_92596 [Melampsora larici-populina
           98AG31]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           PK +LL GP G GKT +++ LA+ +GA FI ++
Sbjct: 132 PKGVLLYGPPGCGKTMLAKTLAKESGAMFINIK 164


>gi|315612147|ref|ZP_07887062.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
 gi|315315708|gb|EFU63745.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|315222831|ref|ZP_07864716.1| ATP-dependent metallopeptidase HflB [Streptococcus anginosus F0211]
 gi|315188067|gb|EFU21797.1| ATP-dependent metallopeptidase HflB [Streptococcus anginosus F0211]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|289628151|ref|ZP_06461105.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330871234|gb|EGH05943.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|288957527|ref|YP_003447868.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288909835|dbj|BAI71324.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 771

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 12/76 (15%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92
           A LR+   P  N L  GPTGVGKT ++R+LA   G    + +++++ E            
Sbjct: 483 AGLREPEKPIGNYLFTGPTGVGKTEVARQLAMTLGIELTRFDMSEYMERHTVSRLIGAPP 542

Query: 93  GYVGRNVEQIIRDLVD 108
           GYVG +   ++ D +D
Sbjct: 543 GYVGFDQGGMLTDAID 558


>gi|258624749|ref|ZP_05719683.1| clpB protein [Vibrio mimicus VM603]
 gi|258583036|gb|EEW07851.1| clpB protein [Vibrio mimicus VM603]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|257486571|ref|ZP_05640612.1| ATP-dependent protease La [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330889510|gb|EGH22171.1| ATP-dependent protease La [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989025|gb|EGH87128.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|227903174|ref|ZP_04020979.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
 gi|227868979|gb|EEJ76400.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFSNA 281


>gi|222034296|emb|CAP77037.1| chaperone clpB [Escherichia coli LF82]
          Length = 823

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 530 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 583

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    I++++++F E   V R V
Sbjct: 584 LANFMFDSDEAMIRIDMSEFMEKHSVSRLV 613


>gi|158423219|ref|YP_001524511.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
 gi|158330108|dbj|BAF87593.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 817

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R + GQ  A  A+A +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 462 TTLKRVVYGQDKAIEALASSIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQ 515

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 516 LASTLGVNLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQTPHCV 568


>gi|156846924|ref|XP_001646348.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117023|gb|EDO18490.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 240 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 295


>gi|148984557|ref|ZP_01817845.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP3-BS71]
 gi|147923334|gb|EDK74448.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP3-BS71]
 gi|301799162|emb|CBW31674.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae OXC141]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|15902056|ref|NP_357606.1| cell division protein FtsH [Streptococcus pneumoniae R6]
 gi|116515587|ref|YP_815436.1| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|149007703|ref|ZP_01831312.1| cell division protein FtsH [Streptococcus pneumoniae SP18-BS74]
 gi|149020171|ref|ZP_01835145.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP23-BS72]
 gi|168487654|ref|ZP_02712162.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491783|ref|ZP_02715926.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC0288-04]
 gi|194396790|ref|YP_002036734.1| cell division protein FtsH [Streptococcus pneumoniae G54]
 gi|225860059|ref|YP_002741568.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237651093|ref|ZP_04525345.1| hypothetical protein SpneC1_10351 [Streptococcus pneumoniae CCRI
           1974]
 gi|298229476|ref|ZP_06963157.1| hypothetical protein SpneCMD_02258 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|307126187|ref|YP_003878218.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           670-6B]
 gi|30315899|sp|P59652|FTSH_STRR6 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|5030426|gb|AAC16243.2| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|15457540|gb|AAK98816.1| Cell-division protein / general stress protein (class III
           heat-shock) [Streptococcus pneumoniae R6]
 gi|116076163|gb|ABJ53883.1| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|147760698|gb|EDK67670.1| cell division protein FtsH [Streptococcus pneumoniae SP18-BS74]
 gi|147930849|gb|EDK81830.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP23-BS72]
 gi|183569571|gb|EDT90099.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1087-00]
 gi|183573974|gb|EDT94502.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC0288-04]
 gi|194356457|gb|ACF54905.1| cell division protein FtsH [Streptococcus pneumoniae G54]
 gi|225728051|gb|ACO23902.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|306483249|gb|ADM90118.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           670-6B]
 gi|327388998|gb|EGE87346.1| hypothetical protein SPAR5_2181 [Streptococcus pneumoniae GA04375]
 gi|332071335|gb|EGI81830.1| hypothetical protein SPAR148_2237 [Streptococcus pneumoniae
           GA17545]
 gi|332077821|gb|EGI88280.1| hypothetical protein SPAR68_0035 [Streptococcus pneumoniae GA41301]
 gi|332198670|gb|EGJ12753.1| hypothetical protein SPAR69_2248 [Streptococcus pneumoniae GA41317]
 gi|332198877|gb|EGJ12959.1| ATP-dependent metallopeptidase HflB family protein [Streptococcus
           pneumoniae GA47368]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|332298105|ref|YP_004440027.1| ATP-dependent chaperone ClpB [Treponema brennaborense DSM 12168]
 gi|332181208|gb|AEE16896.1| ATP-dependent chaperone ClpB [Treponema brennaborense DSM 12168]
          Length = 865

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           E+ + L + +IGQ +A  +VA A+R NR       A L DE  P  + L +GPTGVGKT 
Sbjct: 567 ELENVLHKRVIGQDEAVNSVADAIRRNR-------AGLSDENRPLGSFLFIGPTGVGKTE 619

Query: 69  ISRRLA 74
           +++ LA
Sbjct: 620 LAKTLA 625


>gi|328791134|ref|XP_625184.3| PREDICTED: fidgetin-like protein 1-like [Apis mellifera]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  + + F  +  +  T   ++G   E+++R L  VA
Sbjct: 411 PKGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS-KWIGEG-EKMVRALFAVA 466


>gi|327382794|gb|AEA54270.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
           casei LC2W]
 gi|327385981|gb|AEA57455.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
           casei BD-II]
          Length = 741

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 433 KNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 484

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 485 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 528


>gi|282856667|ref|ZP_06265935.1| ATP-dependent metallopeptidase HflB [Pyramidobacter piscolens
           W5455]
 gi|282585516|gb|EFB90816.1| ATP-dependent metallopeptidase HflB [Pyramidobacter piscolens
           W5455]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT ++R  A  A  PF     + F E+ +VG    + +RDL D A
Sbjct: 188 VPKGVLLLGSPGTGKTLLARACAGEADVPFFSTSGSDFVEM-FVGVGASR-VRDLFDQA 244


>gi|262191803|ref|ZP_06049974.1| ClpB protein [Vibrio cholerae CT 5369-93]
 gi|262032290|gb|EEY50857.1| ClpB protein [Vibrio cholerae CT 5369-93]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|259148663|emb|CAY81908.1| Yta12p [Saccharomyces cerevisiae EC1118]
          Length = 825

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  AG PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 380 IPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM-FVGVGAAR-VRDLFKTA 436


>gi|261820453|ref|YP_003258559.1| protein disaggregation chaperone [Pectobacterium wasabiae WPP163]
 gi|261604466|gb|ACX86952.1| ATP-dependent chaperone ClpB [Pectobacterium wasabiae WPP163]
          Length = 858

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA ++R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVANSIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|298501803|ref|YP_003723743.1| cell division protein FtsH [Streptococcus pneumoniae TCH8431/19A]
 gi|298237398|gb|ADI68529.1| cell division protein FtsH [Streptococcus pneumoniae TCH8431/19A]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|227329202|ref|ZP_03833226.1| protein disaggregation chaperone [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 858

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA ++R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVANSIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|220908358|ref|YP_002483669.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
 gi|219864969|gb|ACL45308.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
          Length = 872

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 571 ELHRRVIGQEEAVTAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELAKAL 624

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A          ++++++++ E   V R V
Sbjct: 625 AAYLFDTEEAMVRIDMSEYMEKHSVSRLV 653


>gi|168484295|ref|ZP_02709247.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042427|gb|EDT50473.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1873-00]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|168186858|ref|ZP_02621493.1| ATP-dependent chaperone ClpB [Clostridium botulinum C str. Eklund]
 gi|169295215|gb|EDS77348.1| ATP-dependent chaperone ClpB [Clostridium botulinum C str. Eklund]
          Length = 866

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ +A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELRKRVIGQDEATVAVSNAVIRAR-------AGLKDERRPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LAR 75
           LAR
Sbjct: 625 LAR 627


>gi|167761662|ref|ZP_02433789.1| hypothetical protein CLOSCI_04074 [Clostridium scindens ATCC 35704]
 gi|167660805|gb|EDS04935.1| hypothetical protein CLOSCI_04074 [Clostridium scindens ATCC 35704]
          Length = 812

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 507 LHKRVVGQEEAVSAVAKAIK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 560

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVGRN 98
             L G     I+V+++++ E            GYVG +
Sbjct: 561 EALFGNEDAMIRVDMSEYMEKHSVAKMIGSPPGYVGHD 598


>gi|148988917|ref|ZP_01820332.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP6-BS73]
 gi|148997945|ref|ZP_01825458.1| cell division protein FtsH [Streptococcus pneumoniae SP11-BS70]
 gi|149013371|ref|ZP_01834080.1| cell division protein FtsH [Streptococcus pneumoniae SP19-BS75]
 gi|168493987|ref|ZP_02718130.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           CDC3059-06]
 gi|168576123|ref|ZP_02722028.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           MLV-016]
 gi|169833372|ref|YP_001693447.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182682982|ref|YP_001834729.1| cell division protein FtsH [Streptococcus pneumoniae CGSP14]
 gi|225857822|ref|YP_002739332.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           70585]
 gi|303259739|ref|ZP_07345715.1| cell division protein FtsH [Streptococcus pneumoniae SP-BS293]
 gi|303265402|ref|ZP_07351309.1| cell division protein FtsH [Streptococcus pneumoniae BS397]
 gi|303266050|ref|ZP_07351944.1| cell division protein FtsH [Streptococcus pneumoniae BS457]
 gi|303268458|ref|ZP_07354252.1| cell division protein FtsH [Streptococcus pneumoniae BS458]
 gi|307066649|ref|YP_003875615.1| ATP-dependent Zn protease [Streptococcus pneumoniae AP200]
 gi|147755955|gb|EDK62998.1| cell division protein FtsH [Streptococcus pneumoniae SP11-BS70]
 gi|147762894|gb|EDK69842.1| cell division protein FtsH [Streptococcus pneumoniae SP19-BS75]
 gi|147925728|gb|EDK76804.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP6-BS73]
 gi|168995874|gb|ACA36486.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182628316|gb|ACB89264.1| cell division protein FtsH [Streptococcus pneumoniae CGSP14]
 gi|183575900|gb|EDT96428.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578051|gb|EDT98579.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           MLV-016]
 gi|225720122|gb|ACO15976.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           70585]
 gi|302639291|gb|EFL69750.1| cell division protein FtsH [Streptococcus pneumoniae SP-BS293]
 gi|302641959|gb|EFL72312.1| cell division protein FtsH [Streptococcus pneumoniae BS458]
 gi|302644354|gb|EFL74607.1| cell division protein FtsH [Streptococcus pneumoniae BS457]
 gi|302645079|gb|EFL75319.1| cell division protein FtsH [Streptococcus pneumoniae BS397]
 gi|306408186|gb|ADM83613.1| ATP-dependent Zn protease [Streptococcus pneumoniae AP200]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|147676618|ref|YP_001210833.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146272715|dbj|BAF58464.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A RAV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 507 LHQRVVGQDEAIRAVSRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 560

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             L G+    ++++++++ E   V R V
Sbjct: 561 EVLFGSEDAMVRIDMSEYMEKFAVSRLV 588


>gi|113460345|ref|YP_718406.1| ATP-dependent Clp protease subunit B [Haemophilus somnus 129PT]
 gi|112822388|gb|ABI24477.1| ATP-dependent Clp protease, subunit B [Haemophilus somnus 129PT]
          Length = 856

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHKRVVGQSEAVVAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 617

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          +++++++F E   V R V
Sbjct: 618 LANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|6714430|gb|AAF26118.1|AC012328_21 putative 26S proteosome regulatory subunit [Arabidopsis thaliana]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 20/141 (14%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAG-----------APFIKVEVTKFTEIGYVGRNVEQI 102
           +NILL GP G GKT  +R LAR +G           AP     VTK  E+   G+  ++ 
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGAQAVTKIHELFDWGKKSKRG 457

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
           +   +D A   + E  +  + E     A+   L+AL+ +T   +   V    L      D
Sbjct: 458 LLLFIDEADAFLCERNKTYMSE-----AQRSALNALLFRTGDQSKDIVL--ALATNRPGD 510

Query: 163 KEIDIEVADTSSDISNFDIPG 183
             +D  VAD   ++  F +PG
Sbjct: 511 --LDSAVADRVDEVLEFPLPG 529


>gi|74142439|dbj|BAE31973.1| unnamed protein product [Mus musculus]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A  + A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRSDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|47213026|emb|CAF91345.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 457

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I+   A+ AG  FI ++ +  T+  Y
Sbjct: 130 PKGVLLYGPPGCGKTLIANATAKEAGFRFINLQPSTLTDKWY 171


>gi|153215108|ref|ZP_01949815.1| clpB protein [Vibrio cholerae 1587]
 gi|153826762|ref|ZP_01979429.1| clpB protein [Vibrio cholerae MZO-2]
 gi|229530515|ref|ZP_04419903.1| ClpB protein [Vibrio cholerae 12129(1)]
 gi|254224985|ref|ZP_04918599.1| clpB protein [Vibrio cholerae V51]
 gi|254291987|ref|ZP_04962767.1| clpB protein [Vibrio cholerae AM-19226]
 gi|297580832|ref|ZP_06942758.1| chaperone clpB [Vibrio cholerae RC385]
 gi|124114899|gb|EAY33719.1| clpB protein [Vibrio cholerae 1587]
 gi|125622372|gb|EAZ50692.1| clpB protein [Vibrio cholerae V51]
 gi|149739413|gb|EDM53653.1| clpB protein [Vibrio cholerae MZO-2]
 gi|150422126|gb|EDN14093.1| clpB protein [Vibrio cholerae AM-19226]
 gi|229332288|gb|EEN97776.1| ClpB protein [Vibrio cholerae 12129(1)]
 gi|297535248|gb|EFH74083.1| chaperone clpB [Vibrio cholerae RC385]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|71004758|ref|XP_757045.1| hypothetical protein UM00898.1 [Ustilago maydis 521]
 gi|46096849|gb|EAK82082.1| hypothetical protein UM00898.1 [Ustilago maydis 521]
          Length = 860

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG
Sbjct: 402 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVG 445


>gi|331217656|ref|XP_003321506.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309300496|gb|EFP77087.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           PK +LL GP G GKT +++ LA+ +GA FI ++ +  +
Sbjct: 132 PKGVLLYGPPGCGKTMLAKTLAKESGAMFINIKPSDLS 169


>gi|302190874|ref|ZP_07267128.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           iners AB-1]
          Length = 713

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 49/280 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L ++IIGQ  A   ++ A+R NR  + +   P          + L VGPTGVGK
Sbjct: 415 KNLADDLKKHIIGQDKAVDVISKAIRRNRVGFNKSGRPIG--------SFLFVGPTGVGK 466

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G     I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 467 TELAKQLAKQMFGTEKSMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 518

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNFDIP 182
           E+   N    IL   + K A  +   +F + L DG ++D +   +   DT   +++    
Sbjct: 519 EKVRHNPYSLILFDEIEK-AHPDVLHLFLQILDDGHLTDSQGRTVSFKDTIIIMTSNAGQ 577

Query: 183 G--GASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           G   ASVG     N +E F KV+G           Q   PE + +  D +++ D + ++S
Sbjct: 578 GIKSASVGFSAENNHNEQFKKVLG-----------QYFKPEFL-NRLDDIVEFDPLSKES 625

Query: 238 -IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            I++V+    + LD+ ++++ +D    I V+ E   +DLL
Sbjct: 626 LIKIVD----LMLDKTNEMI-KDQDLHINVTPEA--KDLL 658


>gi|301800986|emb|CBW33647.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae INV200]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|302782403|ref|XP_002972975.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
 gi|300159576|gb|EFJ26196.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
          Length = 894

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 16/82 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+V EL   ++  +D +R   +  +                 P  +LL GP G GKT ++
Sbjct: 370 EVVKELQELVVYLKDPERFARMGTKP----------------PHGVLLEGPPGCGKTLLA 413

Query: 71  RRLARLAGAPFIKVEVTKFTEI 92
           + +A  AG PF ++  ++F E+
Sbjct: 414 KAVAGEAGVPFYQMAGSEFVEV 435


>gi|270291816|ref|ZP_06198031.1| cell division protein FtsH [Streptococcus sp. M143]
 gi|270279344|gb|EFA25186.1| cell division protein FtsH [Streptococcus sp. M143]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|255718169|ref|XP_002555365.1| KLTH0G07524p [Lachancea thermotolerans]
 gi|238936749|emb|CAR24928.1| KLTH0G07524p [Lachancea thermotolerans]
          Length = 445

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 221 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 276


>gi|227115221|ref|ZP_03828877.1| protein disaggregation chaperone [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 858

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA ++R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVANSIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|153829376|ref|ZP_01982043.1| clpB protein [Vibrio cholerae 623-39]
 gi|148875159|gb|EDL73294.1| clpB protein [Vibrio cholerae 623-39]
          Length = 839

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|28629052|gb|AAO49455.1|AF487263_3 heat shock protein 78 [Leptosphaeria maculans]
 gi|312212325|emb|CBX92408.1| similar to ATP-dependent chaperone protein ClpB [Leptosphaeria
           maculans]
          Length = 807

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L +++ GQ +A  AVA A+R +       A L  E  P  + +++GPTGVGKT + +RLA
Sbjct: 506 LRQFVKGQDEALTAVANAIRLQR------AGLSGENRPIASFMMLGPTGVGKTEVCKRLA 559

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGR 97
             L   P   I+ ++++F+E   V R
Sbjct: 560 EYLFSTPQAVIRFDMSEFSEKHTVSR 585


>gi|71735297|ref|YP_276077.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|289649883|ref|ZP_06481226.1| ATP-dependent protease La [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|71555850|gb|AAZ35061.1| ATP-dependent protease La [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320325575|gb|EFW81637.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327139|gb|EFW83153.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330879209|gb|EGH13358.1| ATP-dependent protease La [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|330981616|gb|EGH79719.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|322375228|ref|ZP_08049742.1| cell division protein FtsH [Streptococcus sp. C300]
 gi|321280728|gb|EFX57767.1| cell division protein FtsH [Streptococcus sp. C300]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|319945969|ref|ZP_08020218.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
 gi|319747777|gb|EFW00022.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
          Length = 657

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|306826199|ref|ZP_07459534.1| cell division protein FtsH [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431675|gb|EFM34656.1| cell division protein FtsH [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|303262206|ref|ZP_07348151.1| cell division protein FtsH [Streptococcus pneumoniae SP14-BS292]
 gi|302636846|gb|EFL67336.1| cell division protein FtsH [Streptococcus pneumoniae SP14-BS292]
          Length = 650

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|298488684|ref|ZP_07006713.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156757|gb|EFH97848.1| ATP-dependent protease La Type I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|293364528|ref|ZP_06611253.1| cell division protein FtsH [Streptococcus oralis ATCC 35037]
 gi|307702818|ref|ZP_07639768.1| ATP-dependent metallopeptidase HflB [Streptococcus oralis ATCC
           35037]
 gi|291317036|gb|EFE57464.1| cell division protein FtsH [Streptococcus oralis ATCC 35037]
 gi|307623674|gb|EFO02661.1| ATP-dependent metallopeptidase HflB [Streptococcus oralis ATCC
           35037]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|307725857|ref|YP_003909070.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|307586382|gb|ADN59779.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
          Length = 637

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 41  QQLPADLRDE--------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           +QL A LRD          +PK +L+VG  G GKT +++ +A  A  PF  V    F E+
Sbjct: 195 RQLVAFLRDAERYRKLGGKIPKGVLIVGAPGTGKTLLAKAVAGEASVPFFSVSGAAFVEM 254

Query: 93  GYVGRNVEQIIRDLVDVA 110
            +VG    + +RDL + A
Sbjct: 255 -FVGVGAAR-VRDLFEQA 270


>gi|269958722|ref|YP_003328509.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
 gi|269848551|gb|ACZ49195.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
          Length = 781

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + I GQ  A   +  A+R         A LR    P  + LL GPTGVGKT + ++LA
Sbjct: 480 LKQVIFGQDAAISQIVDAIR------IAKAGLRSHQKPLASYLLAGPTGVGKTELVKQLA 533

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNV 99
           +  G   ++ +++++ E   V R +
Sbjct: 534 KNMGMKLVRFDMSEYMESHTVARMI 558


>gi|266621305|ref|ZP_06114240.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           hathewayi DSM 13479]
 gi|288867045|gb|EFC99343.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           hathewayi DSM 13479]
          Length = 816

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AVA A+R R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 509 LHERVIGQEEAVTAVAKAIR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 562

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             + G     I+V+++++ E            GYVG
Sbjct: 563 EAMFGTENALIRVDMSEYMEKHSVSKMIGSPPGYVG 598


>gi|262401592|ref|ZP_06078158.1| ClpB protein [Vibrio sp. RC586]
 gi|262352009|gb|EEZ01139.1| ClpB protein [Vibrio sp. RC586]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|253689510|ref|YP_003018700.1| ATP-dependent chaperone ClpB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756088|gb|ACT14164.1| ATP-dependent chaperone ClpB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA ++R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVANSIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|170749064|ref|YP_001755324.1| ATP-dependent Lon protease-like protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655586|gb|ACB24641.1| ATP-dependent Lon protease-like protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 552

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 25  DAKRAVAIALRNRWRRQQ-LPADLRDELMPKN------ILLVGPTGVGKTAISRRLARLA 77
           DA  A A+A   RW     +P  +R+    +       + LVGP G+GKTAI R +A  +
Sbjct: 303 DAWEAAAVA---RWPHMPGVPRAIREAQAGRTHWGSMRLCLVGPAGIGKTAIGRFIAEHS 359

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           G PF +      T+  Y G ++      L  VA  +    R
Sbjct: 360 GLPFSRYNADNSTDNSYGGTSIRWNSGHLGTVAAMLAEHMR 400


>gi|154333633|ref|XP_001563073.1| proteasome regulatory ATPase subunittcc1l8.3 [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060083|emb|CAM37396.1| putative proteasome regulatory ATPase subunittcc1l8.3 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 361

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT + + +AR   A FI
Sbjct: 116 KQEIREAVELPLTHAGLYEQIGID-----PPRGVLLYGPPGTGKTMLVKAVARHTKASFI 170

Query: 83  KVEVTKFTE--IGYVGRNVEQIIR 104
           +V  ++F +  +G   R V  + R
Sbjct: 171 RVVGSEFVQKFLGEGPRKVRDVFR 194


>gi|15805610|ref|NP_294306.1| cell division protein FtsH [Deinococcus radiodurans R1]
 gi|6458277|gb|AAF10160.1|AE001916_6 cell division protein FtsH [Deinococcus radiodurans R1]
          Length = 618

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  A  P+  +  + F E+ +VG    + +RDL + A
Sbjct: 186 IPRGVLLVGPPGSGKTLLAKAVAGEAKVPYFSISGSDFVEM-FVGVGAAR-VRDLFEQA 242


>gi|147675005|ref|YP_001216203.1| clpB protein [Vibrio cholerae O395]
 gi|262170007|ref|ZP_06037697.1| ClpB protein [Vibrio cholerae RC27]
 gi|146316888|gb|ABQ21427.1| clpB protein [Vibrio cholerae O395]
 gi|227012536|gb|ACP08746.1| clpB protein [Vibrio cholerae O395]
 gi|262021741|gb|EEY40452.1| ClpB protein [Vibrio cholerae RC27]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|58264214|ref|XP_569263.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134107750|ref|XP_777486.1| hypothetical protein CNBB0600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260178|gb|EAL22839.1| hypothetical protein CNBB0600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223913|gb|AAW41956.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL
Sbjct: 364 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGPSR-VRDL 416


>gi|332199080|gb|EGJ13161.1| hypothetical protein SPAR120_2247 [Streptococcus pneumoniae
           GA47901]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|330950049|gb|EGH50309.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae Cit
           7]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|321248397|ref|XP_003191116.1| ATPase [Cryptococcus gattii WM276]
 gi|317457583|gb|ADV19329.1| ATPase, putative [Cryptococcus gattii WM276]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  +L GP G GKT +++  A  AG PF+ V  ++F E+ +VG    + +RDL
Sbjct: 361 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGPSR-VRDL 413


>gi|304384430|ref|ZP_07366835.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
 gi|304334482|gb|EFM00770.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
          Length = 671

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSDFVEM-FVG 268


>gi|303254914|ref|ZP_07340999.1| cell division protein FtsH [Streptococcus pneumoniae BS455]
 gi|302598185|gb|EFL65246.1| cell division protein FtsH [Streptococcus pneumoniae BS455]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|296329696|ref|ZP_06872181.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674093|ref|YP_003865765.1| ATP-dependent Clp protease [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153194|gb|EFG94058.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412337|gb|ADM37456.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L   +IGQ+ A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 401 KELEAKLRERVIGQEVAVQKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 454

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+ LA  L G     I+++++++ E            GYVG 
Sbjct: 455 LSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGH 497


>gi|262198175|ref|YP_003269384.1| ATP-dependent Clp protease ATP-binding subunit clpA [Haliangium
           ochraceum DSM 14365]
 gi|262081522|gb|ACY17491.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Haliangium
           ochraceum DSM 14365]
          Length = 829

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAIS 70
           I  EL R I GQ +A   +A +++         A L     P    L  GPTGVGKT ++
Sbjct: 460 IEDELKRVIYGQDEAVERLAESIKLSR------AGLSHPDKPTGCFLFAGPTGVGKTELA 513

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++LA + G  F++ +++++ E            GYVG +   ++ D V+
Sbjct: 514 KQLAGVLGVEFLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDAVN 562


>gi|237798721|ref|ZP_04587182.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806154|ref|ZP_04592858.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021574|gb|EGI01631.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027267|gb|EGI07322.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|254520159|ref|ZP_05132215.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226913908|gb|EEH99109.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 587

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           Y+ G ++AK +   +   L+N  + +   A      MPK ++L G  G GKT +++ +A 
Sbjct: 150 YVAGNEEAKESLMDIVDFLKNPQKYKDYGAR-----MPKGVILYGSPGTGKTLLAKAVAG 204

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F ++ YVG    + IR+L   A
Sbjct: 205 EAKVPFYALSGSDFVQV-YVGVGAAR-IRNLFKKA 237


>gi|222152128|ref|YP_002561288.1| truncated stress response-related Clp ATPase ClpC [Macrococcus
           caseolyticus JCSC5402]
 gi|222121257|dbj|BAH18592.1| truncated stress response-related Clp ATPase ClpC [Macrococcus
           caseolyticus JCSC5402]
          Length = 545

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA  +++ A+R R R     A L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 243 LHNRVIGQSDAVSSISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELAKALA 296

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGRNV 99
                     I+V++++F E   V R V
Sbjct: 297 EAMFGEEDAMIRVDMSEFMEKHSVSRMV 324


>gi|308799367|ref|XP_003074464.1| MDN1, midasin homolog (ISS) [Ostreococcus tauri]
 gi|116000635|emb|CAL50315.1| MDN1, midasin homolog (ISS) [Ostreococcus tauri]
          Length = 5771

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           +LLVG TG GKTA+ + LARL GAP   V ++  +E
Sbjct: 633 VLLVGETGTGKTALIQELARLTGAPLTVVNLSNQSE 668


>gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
           16790]
 gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase 2 [Haloquadratum walsbyi DSM
           16790]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANQTDASFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 238


>gi|50122267|ref|YP_051434.1| protein disaggregation chaperone [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612793|emb|CAG76243.1| ClpB protein (heat shock protein f84.1) [Pectobacterium
           atrosepticum SCRI1043]
          Length = 858

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AVA    N  RR +  A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVIGQNEAVEAVA----NSIRRSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|84500106|ref|ZP_00998372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
 gi|84392040|gb|EAQ04308.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
          Length = 776

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  +++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 463 KDLEQTLKRVVFGQDLAIESLSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 517 VAKQLADSLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 567


>gi|325106944|ref|YP_004268012.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
 gi|324967212|gb|ADY57990.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
          Length = 656

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A +     PK ILL+G  G+GKT ++R  A  A  PF  +  ++F ++ 
Sbjct: 233 LKNPAKFQRLGAQI-----PKGILLMGSPGIGKTLLARATAGEAEVPFYSINGSEFIQM- 286

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL   A
Sbjct: 287 FVGVGASR-VRDLFRTA 302


>gi|306828584|ref|ZP_07461778.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
 gi|304429192|gb|EFM32278.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|302186924|ref|ZP_07263597.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae 642]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|302823487|ref|XP_002993396.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
 gi|300138827|gb|EFJ05581.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
          Length = 892

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 16/82 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+V EL   ++  +D +R   +  +                 P  +LL GP G GKT ++
Sbjct: 368 EVVKELQELVVYLKDPERFARMGTKP----------------PHGVLLEGPPGCGKTLLA 411

Query: 71  RRLARLAGAPFIKVEVTKFTEI 92
           + +A  AG PF ++  ++F E+
Sbjct: 412 KAVAGEAGVPFYQMAGSEFVEV 433


>gi|262163882|ref|ZP_06031621.1| ClpB protein [Vibrio mimicus VM223]
 gi|262027410|gb|EEY46076.1| ClpB protein [Vibrio mimicus VM223]
          Length = 823

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 532 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 585

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 586 NFLFDSEDAMVRVDMSEFMEKHSVARLV 613


>gi|305680258|ref|ZP_07403066.1| ATP-dependent chaperone protein ClpB [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659789|gb|EFM49288.1| ATP-dependent chaperone protein ClpB [Corynebacterium matruchotii
           ATCC 14266]
          Length = 848

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + ++GQ DA +AVA A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 565 AELGKRVVGQLDAVQAVADAVR-RAR-----AGVADPNRPMGSFLFLGPTGVGKTELAKS 618

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 619 LAEFMFDDERAMVRIDMSEYAEKHAVARLV 648


>gi|237821205|ref|ZP_04597050.1| hypothetical protein SpneC19_02581 [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 651

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|297742262|emb|CBI34411.3| unnamed protein product [Vitis vinifera]
          Length = 836

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 617


>gi|149244794|ref|XP_001526940.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449334|gb|EDK43590.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 223 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 278


>gi|119190681|ref|XP_001245947.1| hypothetical protein CIMG_05388 [Coccidioides immitis RS]
          Length = 4716

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  S + + S+  R  +G+  A  +   +LR     +Q+ A L+   M + +LLVG TG+
Sbjct: 404 FCQSIKVLRSQKSRQSVGKGSAFASTKASLRTM---EQVAAALQ---MSEPVLLVGETGI 457

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVD 108
           GKTA+ +RLA L       V +++ +E      GY   N+  I   LVD
Sbjct: 458 GKTAVIQRLATLLNQRLTVVNLSQQSETTDLLGGYKPINLRSIAVPLVD 506


>gi|27363946|ref|NP_759474.1| ATP-dependent chaperone ClpB [Vibrio vulnificus CMCP6]
 gi|54035847|sp|Q8DEV2|CLPB_VIBVU RecName: Full=Chaperone protein ClpB
 gi|27360063|gb|AAO09001.1| ATP-dependent chaperone ClpB [Vibrio vulnificus CMCP6]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
 gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 238


>gi|319957242|ref|YP_004168505.1| atpase aaa-2 domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419646|gb|ADV46756.1| ATPase AAA-2 domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 858

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 16  LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L   ++GQ +A +AVA A+ RN+       A L D   P  + L +GPTGVGKT  ++ L
Sbjct: 569 LKEEVVGQDEAIKAVARAIKRNK-------AGLSDVNRPIGSFLFLGPTGVGKTQTAKAL 621

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A+    +    I++++T++ E   V R V
Sbjct: 622 AKFLFDSEKALIRIDMTEYMEKHSVSRLV 650


>gi|298674100|ref|YP_003725850.1| 26S proteasome subunit P45 family protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287088|gb|ADI73054.1| 26S proteasome subunit P45 family [Methanohalobium evestigatum
           Z-7303]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT +++ +A    A FI+V  ++  +  Y+G    +++R++ ++A
Sbjct: 222 PKGILLAGPPGTGKTLLAKAVAHRTDASFIRVVGSELVQ-KYIGEGA-KLVREVFEMA 277


>gi|297803286|ref|XP_002869527.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315363|gb|EFH45786.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 726

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 506


>gi|260681795|ref|YP_003213080.1| ATP-dependent Clp protease [Clostridium difficile CD196]
 gi|260685392|ref|YP_003216525.1| ATP-dependent Clp protease [Clostridium difficile R20291]
 gi|260207958|emb|CBA60088.1| ATP-dependent Clp protease [Clostridium difficile CD196]
 gi|260211408|emb|CBE01489.1| ATP-dependent Clp protease [Clostridium difficile R20291]
          Length = 749

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+ A ++++ A+R R R     A L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 445 LHNRVIGQEQAVKSISKAIR-RSR-----AGLKDPNRPIGSFLFLGPTGVGKTELSKALA 498

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
            +        I+++++++ E   V R
Sbjct: 499 EVQFGDENQIIRIDMSEYMEKHAVSR 524


>gi|254574136|ref|XP_002494177.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238033976|emb|CAY71998.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|328354003|emb|CCA40400.1| 26S protease regulatory subunit 7 [Pichia pastoris CBS 7435]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 217 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 272


>gi|222423365|dbj|BAH19655.1| AT5G52882 [Arabidopsis thaliana]
          Length = 829

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 552 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 609


>gi|191638751|ref|YP_001987917.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus casei
           BL23]
 gi|190713053|emb|CAQ67059.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus casei
           BL23]
          Length = 698

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 390 KNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 441

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 442 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 485


>gi|154490822|ref|ZP_02030763.1| hypothetical protein PARMER_00739 [Parabacteroides merdae ATCC
           43184]
 gi|154088570|gb|EDN87614.1| hypothetical protein PARMER_00739 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKV---EVTKFTEIGYVGRNVEQIIR 104
           ++L+GPTGVGKT +S R+A   G+P I     ++ K   IG     VEQ+ R
Sbjct: 5   VILLGPTGVGKTELSLRVAEHFGSPIISSDSRQLYKDLPIGTAAPTVEQMAR 56


>gi|153820387|ref|ZP_01973054.1| chaperone ClpB [Vibrio cholerae NCTC 8457]
 gi|126509069|gb|EAZ71663.1| chaperone ClpB [Vibrio cholerae NCTC 8457]
          Length = 697

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 406 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 459

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 460 NFLFDSEDAMVRVDMSEFMEKHSVARLV 487


>gi|28871352|ref|NP_793971.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213971112|ref|ZP_03399231.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1]
 gi|301381871|ref|ZP_07230289.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato Max13]
 gi|302132839|ref|ZP_07258829.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28854603|gb|AAO57666.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924101|gb|EEB57677.1| ATP-dependent protease La [Pseudomonas syringae pv. tomato T1]
 gi|330877428|gb|EGH11577.1| ATP-dependent protease La [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331015609|gb|EGH95665.1| ATP-dependent protease La [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|66047171|ref|YP_237012.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257878|gb|AAY38974.1| Peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae B728a]
 gi|330973039|gb|EGH73105.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|50287085|ref|XP_445972.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525278|emb|CAG58891.1| unnamed protein product [Candida glabrata]
          Length = 472

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 248 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 303


>gi|330957800|gb|EGH58060.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|284162725|ref|YP_003401348.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM
           5631]
 gi|284012722|gb|ADB58675.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM
           5631]
          Length = 407

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FI+V  ++F +  Y+G    +++R++ ++A
Sbjct: 185 PKGVLLYGPPGTGKTLLAKAVANKTKATFIRVVGSEFVQ-KYIGEGA-RLVREVFELA 240


>gi|281200708|gb|EFA74926.1| hypothetical protein PPL_11960 [Polysphondylium pallidum PN500]
          Length = 701

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I R +A    A F  +  +  T   ++G + E+++R L  VA
Sbjct: 462 PKGLLLFGPPGTGKTMIGRAIASGVNATFFSISASSLTS-KWIG-DGEKMVRALFAVA 517


>gi|269958552|ref|YP_003328339.1| ATP-dependent Clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
 gi|269848381|gb|ACZ49025.1| ATP-dependent Clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
          Length = 868

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+ + +IGQ+ A RAV+ A+R R R     A ++D   P  + L +GPTGVGKT +++ L
Sbjct: 563 EIGKSVIGQESAVRAVSNAVR-RSR-----AGVQDAQKPMGSFLFLGPTGVGKTELTKAL 616

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           +     + +  ++ ++++F E            GYVG
Sbjct: 617 SEFLFDSRSALLRFDMSEFMEKHSVAKLIGAPPGYVG 653


>gi|255654110|ref|ZP_05399519.1| ATP-dependent Clp protease [Clostridium difficile QCD-23m63]
 gi|296449851|ref|ZP_06891618.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296877915|ref|ZP_06901935.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
           difficile NAP07]
 gi|296261338|gb|EFH08166.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296431112|gb|EFH16939.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
           difficile NAP07]
          Length = 815

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+ A ++++ A+R R R     A L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 511 LHNRVIGQEQAVKSISKAIR-RSR-----AGLKDPNRPIGSFLFLGPTGVGKTELSKALA 564

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
            +        I+++++++ E   V R
Sbjct: 565 EVQFGDENQIIRIDMSEYMEKHAVSR 590


>gi|225464688|ref|XP_002275572.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 787

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G  VE+ +R L  +A  I
Sbjct: 512 RGILLFGPPGNGKTMLAKAIANEAGARFINVSMSTVTS-KWFG-EVEKNVRALFTLAAKI 569


>gi|225022530|ref|ZP_03711722.1| hypothetical protein CORMATOL_02570 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944769|gb|EEG25978.1| hypothetical protein CORMATOL_02570 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 848

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + ++GQ DA +AVA A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 565 AELGKRVVGQLDAVQAVADAVR-RAR-----AGVADPNRPMGSFLFLGPTGVGKTELAKS 618

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 619 LAEFMFDDERAMVRIDMSEYAEKHAVARLV 648


>gi|254448788|ref|ZP_05062245.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [gamma
           proteobacterium HTCC5015]
 gi|198261629|gb|EDY85917.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [gamma
           proteobacterium HTCC5015]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R +   L+R + GQ +A + +  A+   R+  R  + P          + L  GPTGVGK
Sbjct: 143 RRLEDNLNRVVFGQPEAIQQLTTAIKLARSGLREGEKPI--------GSFLFAGPTGVGK 194

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           T ++R+LA   G   ++ +++++ E   V R
Sbjct: 195 TEVTRQLAMNLGIELVRFDMSEYMERHTVSR 225


>gi|170728049|ref|YP_001762075.1| ATP-dependent chaperone ClpB [Shewanella woodyi ATCC 51908]
 gi|169813396|gb|ACA87980.1| ATP-dependent chaperone ClpB [Shewanella woodyi ATCC 51908]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHTQVIGQNEAVDAVSNAIR-RSR-----AGLSDPDRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +      +  +++++++F E   V R
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHSVAR 645


>gi|118404624|ref|NP_001072759.1| AFG3 ATPase family gene 3-like 2 [Xenopus (Silurana) tropicalis]
 gi|116487850|gb|AAI25788.1| hypothetical protein MGC147390 [Xenopus (Silurana) tropicalis]
          Length = 807

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 329 LKNPKQYQDLGAKI-----PKGAVLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 382

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL  +A
Sbjct: 383 FVGVGPAR-VRDLFVLA 398


>gi|4455359|emb|CAB36769.1| putative protein [Arabidopsis thaliana]
 gi|7269654|emb|CAB79602.1| putative protein [Arabidopsis thaliana]
          Length = 726

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 506


>gi|330720215|gb|EGG98592.1| Cell division protein FtsH [gamma proteobacterium IMCC2047]
          Length = 519

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           MPK IL++G  G GKT +++  A  A  PF  +  ++F E+ YVG    + +RD+
Sbjct: 102 MPKGILMMGAPGTGKTLLAKAPAAEAEVPFFSISGSEFIEL-YVGVGASR-VRDM 154


>gi|322392413|ref|ZP_08065873.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
 gi|321144405|gb|EFX39806.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|320580457|gb|EFW94679.1| protease subunit component [Pichia angusta DL-1]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 218 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 273


>gi|294905732|ref|XP_002777666.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus
           marinus ATCC 50983]
 gi|239885557|gb|EER09482.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus
           marinus ATCC 50983]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 23/133 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++R  A    A F+K+   +  ++ ++G +  +++RD    A N
Sbjct: 238 PKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQM-FIG-DGSKMVRD----AFN 291

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTAT----SNTREVFRKKLR-----DGEISDK 163
           + +E      +  A I  +E  LDA+  K +     S  REV R  L      DG  SD 
Sbjct: 292 LAKE------KAPAIIFIDE--LDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDD 343

Query: 164 EIDIEVADTSSDI 176
            + +  A   +D+
Sbjct: 344 RVKVIAATNRADM 356


>gi|294877998|ref|XP_002768232.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus
           ATCC 50983]
 gi|239870429|gb|EER00950.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus
           ATCC 50983]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 23/133 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++R  A    A F+K+   +  ++ ++G +  +++RD    A N
Sbjct: 236 PKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQM-FIG-DGSKMVRD----AFN 289

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTAT----SNTREVFRKKLR-----DGEISDK 163
           + +E      +  A I  +E  LDA+  K +     S  REV R  L      DG  SD 
Sbjct: 290 LAKE------KAPAIIFIDE--LDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDD 341

Query: 164 EIDIEVADTSSDI 176
            + +  A   +D+
Sbjct: 342 RVKVIAATNRADM 354


>gi|260943676|ref|XP_002616136.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720]
 gi|238849785|gb|EEQ39249.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720]
          Length = 440

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 216 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 271


>gi|154345946|ref|XP_001568910.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066252|emb|CAM44042.1| putative mitochondrial ATP-dependent zinc metallopeptidase
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 533

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A+ AG  F     ++F E+ +VG    + +R+L   A
Sbjct: 93  LPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEM-FVGVGARR-VRELFAAA 149


>gi|145338044|ref|NP_186956.2| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|110741899|dbj|BAE98891.1| putative 26S proteosome regulatory subunit [Arabidopsis thaliana]
 gi|332640376|gb|AEE73897.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 628

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 20/141 (14%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAG-----------APFIKVEVTKFTEIGYVGRNVEQI 102
           +NILL GP G GKT  +R LAR +G           AP     VTK  E+   G+  ++ 
Sbjct: 387 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGAQAVTKIHELFDWGKKSKRG 446

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
           +   +D A   + E  +  + E     A+   L+AL+ +T   +   V    L      D
Sbjct: 447 LLLFIDEADAFLCERNKTYMSE-----AQRSALNALLFRTGDQSKDIVL--ALATNRPGD 499

Query: 163 KEIDIEVADTSSDISNFDIPG 183
             +D  VAD   ++  F +PG
Sbjct: 500 --LDSAVADRVDEVLEFPLPG 518


>gi|110741581|dbj|BAE98739.1| hypothetical protein [Arabidopsis thaliana]
          Length = 751

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 552 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 609


>gi|298255108|ref|ZP_06978694.1| hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str.
           Canada MDR_19A]
          Length = 663

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|291280495|ref|YP_003497330.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Deferribacter
           desulfuricans SSM1]
 gi|290755197|dbj|BAI81574.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Deferribacter
           desulfuricans SSM1]
          Length = 799

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L +YI+GQ +A   VA +++  +      A L +   P  + + +GPTGVGKT +S+RLA
Sbjct: 500 LKKYIVGQDEAVDLVAKSIKRSF------AGLNNPNKPLGSFIFLGPTGVGKTELSKRLA 553

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 554 ETIFGSKDALIRIDMSEYMEKFNVSR 579


>gi|240256093|ref|NP_194529.4| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332660018|gb|AEE85418.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 553 RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 610


>gi|254449004|ref|ZP_05062458.1| ATP-dependent chaperone ClpB [gamma proteobacterium HTCC5015]
 gi|198261398|gb|EDY85689.1| ATP-dependent chaperone ClpB [gamma proteobacterium HTCC5015]
          Length = 854

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A RAV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 564 LHQRVVGQDEAVRAVSDAVR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELTKALA 617

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                     +++++++F E   V R V
Sbjct: 618 AFLFDTEDAMVRIDMSEFMEKHSVARLV 645


>gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a]
 gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118]
 gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A
Sbjct: 239 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEA 294


>gi|169334523|ref|ZP_02861716.1| hypothetical protein ANASTE_00926 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259240|gb|EDS73206.1| hypothetical protein ANASTE_00926 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT I++ LA   GA F+    ++F E  +VG    + IR L D A
Sbjct: 58  IPSGVLLYGPPGTGKTLIAKALAGECGATFMYASGSEFIE-KFVGIGASR-IRALFDKA 114


>gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A
Sbjct: 239 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEA 294


>gi|50422143|ref|XP_459634.1| DEHA2E07436p [Debaryomyces hansenii CBS767]
 gi|49655302|emb|CAG87864.1| DEHA2E07436p [Debaryomyces hansenii]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 222 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 277


>gi|330964513|gb|EGH64773.1| ATP-dependent protease La [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 805

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 387 VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 446

Query: 108 DVAI 111
           DV +
Sbjct: 447 DVEV 450


>gi|328775871|ref|XP_395325.3| PREDICTED: ATPase family AAA domain-containing protein 1-A-like
           [Apis mellifera]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           +R++L  D +    PK +LL GP G GKT I++  A+     FI ++V+  T+  Y
Sbjct: 118 QRKELFEDSQLTQAPKGVLLHGPPGCGKTMIAKATAKETKTCFINLDVSILTDKWY 173


>gi|331265451|ref|YP_004325081.1| cell-division protein [Streptococcus oralis Uo5]
 gi|326682123|emb|CBY99739.1| cell-division protein [Streptococcus oralis Uo5]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|312144275|ref|YP_003995721.1| ATPase AAA-2 domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904926|gb|ADQ15367.1| ATPase AAA-2 domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 817

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 504 ELHKRVIGQDEAITAVSEAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELAKTL 557

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          I+V+++++ E   V R V
Sbjct: 558 AETMFNDEDAMIRVDMSEYMEKHSVSRLV 586


>gi|307729565|ref|YP_003906789.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1003]
 gi|307584100|gb|ADN57498.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1003]
          Length = 865

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHERVIGQDEAINAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     +    I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A
Sbjct: 239 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEA 294


>gi|225555079|gb|EEH03372.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
 gi|240281287|gb|EER44790.1| 26S protease regulatory subunit 8 [Ajellomyces capsulatus H143]
 gi|325092219|gb|EGC45529.1| 26S protease regulatory subunit 8 [Ajellomyces capsulatus H88]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|219855758|ref|YP_002472880.1| hypothetical protein CKR_2415 [Clostridium kluyveri NBRC 12016]
 gi|219569482|dbj|BAH07466.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 608

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           MPK I+L G  G GKT +++ +A  A  PF  V  + F +I YVG    + IR L   A 
Sbjct: 206 MPKGIMLYGQPGTGKTLLAKAVAGEANVPFYAVSGSDFIQI-YVGVGASR-IRQLFKKAR 263

Query: 112 N 112
           N
Sbjct: 264 N 264


>gi|210615483|ref|ZP_03290610.1| hypothetical protein CLONEX_02826 [Clostridium nexile DSM 1787]
 gi|210150332|gb|EEA81341.1| hypothetical protein CLONEX_02826 [Clostridium nexile DSM 1787]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 21/98 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 508 LHKRVIGQEEAVSAVARAVK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 561

Query: 75  R-LAG--APFIKVEVTKFTE-----------IGYVGRN 98
             L G     I+V+++++ E            GYVG +
Sbjct: 562 EALFGDENAMIRVDMSEYMEKHSVSKMIGSPPGYVGHD 599


>gi|157692042|ref|YP_001486504.1| endopeptidase ClpE [Bacillus pumilus SAFR-032]
 gi|157680800|gb|ABV61944.1| S14 family endopeptidase ClpE [Bacillus pumilus SAFR-032]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           +EI   L   +IGQ+ A   VA A++ R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 401 KEIDVRLKARVIGQEHAVEKVAKAVK-RSR-----AGLKSKHRPTGSFLFVGPTGVGKTE 454

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGRN 98
           +S+ LA  L G+    I+++++++ E            GYVG +
Sbjct: 455 LSKTLAEELFGSREAIIRLDMSEYMEKHSVSKLIGSPPGYVGHD 498


>gi|152993046|ref|YP_001358767.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfurovum
           sp. NBC37-1]
 gi|151424907|dbj|BAF72410.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfurovum
           sp. NBC37-1]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 23/101 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           I S L   ++GQ++A +AVA A+ RN+       A L D   P  + + +GPTGVGKT +
Sbjct: 564 IESILKEEVVGQEEALKAVARAIKRNK-------AGLSDVNRPIGSFMFLGPTGVGKTQV 616

Query: 70  SRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA+    +    I+++++++ E            GYVG
Sbjct: 617 AKTLAKFLFDSEKSLIRIDMSEYMEKHAASRLVGAPPGYVG 657


>gi|154273042|ref|XP_001537373.1| 26S protease regulatory subunit 8 [Ajellomyces capsulatus NAm1]
 gi|150415885|gb|EDN11229.1| 26S protease regulatory subunit 8 [Ajellomyces capsulatus NAm1]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|116075417|ref|ZP_01472677.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. RS9916]
 gi|116067614|gb|EAU73368.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. RS9916]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L   ++GQQ A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ 
Sbjct: 571 SQLHERVVGQQQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 624

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    ++++++++ E   V R
Sbjct: 625 LAAQLFDSDDAMVRIDMSEYMEKHSVSR 652


>gi|50550451|ref|XP_502698.1| YALI0D11418p [Yarrowia lipolytica]
 gi|49648566|emb|CAG80886.1| YALI0D11418p [Yarrowia lipolytica]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 212 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 267


>gi|330506810|ref|YP_004383238.1| proteasome-activating nucleotidase [Methanosaeta concilii GP-6]
 gi|328927618|gb|AEB67420.1| Proteasome-activating nucleotidase [Methanosaeta concilii GP-6]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A+   A F++V  ++F +  Y+G    +++R+L ++A
Sbjct: 185 PKGVLLHGPPGTGKTILAKAVAQSTEATFMRVVGSEFVQ-KYIGEGA-RLVRELFELA 240


>gi|325179638|emb|CCA14036.1| 26S protease regulatory subunit 6AA putative [Albugo laibachii
           Nc14]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++R  A+   A F+K+      ++ ++G    +++RD    A  
Sbjct: 210 PKGVLLHGPPGTGKTLLARACAKQTDAVFLKIAAPLLVQM-FIGDGA-KLVRD----AFA 263

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164
           + +E   D     A I  +E  LDA+  K      S  REV R  L      DG  S+ +
Sbjct: 264 LAKEKCEDNKCGGAIIFIDE--LDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFTSNTK 321

Query: 165 IDIEVADTSSDI 176
           I +  A    D+
Sbjct: 322 IKVIAATNRPDV 333


>gi|323703791|ref|ZP_08115429.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531260|gb|EGB21161.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 818

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 511 LHQRVVGQDDAVKAVSRAVR-RAR-----AGLKDPKRPVGSFIFLGPTGVGKTELARALA 564

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     ++++++++ E   V R V
Sbjct: 565 EALFGDEDALVRIDMSEYMEKHAVSRLV 592


>gi|331220862|ref|XP_003323106.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309302096|gb|EFP78687.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +P+ +LL GP G GKT ++R +A  AG  F     ++F E+ YVG    +I
Sbjct: 414 LPRGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEM-YVGVGARRI 463


>gi|298500822|ref|ZP_07010625.1| chaperone clpB [Vibrio cholerae MAK 757]
 gi|297540603|gb|EFH76661.1| chaperone clpB [Vibrio cholerae MAK 757]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQKEAVEVVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    ++V++++F E   V R V
Sbjct: 620 NFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|302143744|emb|CBI22605.3| unnamed protein product [Vitis vinifera]
          Length = 782

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G  VE+ +R L  +A  I
Sbjct: 504 RGILLFGPPGNGKTMLAKAIANEAGARFINVSMSTVTS-KWFGE-VEKNVRALFTLAAKI 561


>gi|260779176|ref|ZP_05888068.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605340|gb|EEX31635.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 757

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++    R  L AD +      + L  GPTG
Sbjct: 448 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK--LTRAGLGADNKP---VGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 503 VGKTEVTVQLSKLMGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAV 557


>gi|261188087|ref|XP_002620460.1| 26S protease regulatory subunit 8 [Ajellomyces dermatitidis
           SLH14081]
 gi|239593335|gb|EEQ75916.1| 26S protease regulatory subunit 8 [Ajellomyces dermatitidis
           SLH14081]
 gi|239609078|gb|EEQ86065.1| 26S protease regulatory subunit 8 [Ajellomyces dermatitidis ER-3]
 gi|327356435|gb|EGE85292.1| 26S protease regulatory subunit 8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|116495242|ref|YP_806976.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus casei ATCC 334]
 gi|239632123|ref|ZP_04675154.1| ATP-binding subunit of Clp protease and DnaK+DnaJ chaperones
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105392|gb|ABJ70534.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus casei ATCC 334]
 gi|239526588|gb|EEQ65589.1| ATP-binding subunit of Clp protease and DnaK+DnaJ chaperones
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 698

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 25/104 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L++++IGQ +A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 390 KNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 441

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           T ++++LA+ L G+    I+ +++++ E            GYVG
Sbjct: 442 TELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVG 485


>gi|326428441|gb|EGD74011.1| Rpt3-PA [Salpingoeca sp. ATCC 50818]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L      QQ+  +      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 161 KQEMREAVELPLTQFQLYQQIGIE-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 215

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 216 RVVGSEFVQ-KYLGEG-PRMVRDVFRMA 241


>gi|323491099|ref|ZP_08096289.1| hypothetical protein VIBR0546_19649 [Vibrio brasiliensis LMG 20546]
 gi|323314646|gb|EGA67720.1| hypothetical protein VIBR0546_19649 [Vibrio brasiliensis LMG 20546]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A   V+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKCVIGQTEAVEVVSNAIR-RSR-----AGLSDPNQPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 620 KFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|312220125|emb|CBY00067.1| similar to 26S protease regulatory subunit 8 [Leptosphaeria
           maculans]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|254577681|ref|XP_002494827.1| ZYRO0A10560p [Zygosaccharomyces rouxii]
 gi|238937716|emb|CAR25894.1| ZYRO0A10560p [Zygosaccharomyces rouxii]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 244 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 299


>gi|295671849|ref|XP_002796471.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb01]
 gi|225681373|gb|EEH19657.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb03]
 gi|226283451|gb|EEH39017.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb01]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|169599382|ref|XP_001793114.1| hypothetical protein SNOG_02510 [Phaeosphaeria nodorum SN15]
 gi|160704593|gb|EAT90722.2| hypothetical protein SNOG_02510 [Phaeosphaeria nodorum SN15]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|149003154|ref|ZP_01828063.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP14-BS69]
 gi|147758895|gb|EDK65891.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP14-BS69]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E  +G     V  +  D    
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKA 278

Query: 110 AINIVRESRRDEVREQASIN 129
           A  I+     D V  Q  + 
Sbjct: 279 APAIIFIDEIDAVGRQRGVG 298


>gi|88860128|ref|ZP_01134767.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas tunicata D2]
 gi|88818122|gb|EAR27938.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas tunicata D2]
          Length = 754

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E +  +DR     + GQ ++  A+  A+R    R    + L  E  P  + L  GPT
Sbjct: 447 SDKETLKNIDRNLKMVVFGQDESIDALTAAIR--LSR----SGLSSEDKPIGSFLFAGPT 500

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           GVGKT ++++LA+  G   I+ +++++ E   + R
Sbjct: 501 GVGKTEVTKQLAKCMGVELIRFDMSEYLERHAISR 535


>gi|68480234|ref|XP_715926.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|68480347|ref|XP_715876.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|46437519|gb|EAK96864.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|46437571|gb|EAK96915.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|238879018|gb|EEQ42656.1| 26S protease regulatory subunit 7 [Candida albicans WO-1]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 220 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 275


>gi|297696553|ref|XP_002825454.1| PREDICTED: spermatogenesis-associated protein 5-like protein 1-like
           [Pongo abelii]
          Length = 787

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDV 109
           +P+ +LL GP GVGKT + R +AR AGA  + V       +  G    NV Q+ +   ++
Sbjct: 267 VPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETEENVRQVFQRAQEL 326

Query: 110 A 110
           A
Sbjct: 327 A 327


>gi|296875507|ref|ZP_06899579.1| membrane ATPase FtsH, degrades sigma32 [Streptococcus parasanguinis
           ATCC 15912]
 gi|312866810|ref|ZP_07727023.1| cell division protease FtsH [Streptococcus parasanguinis F0405]
 gi|322390537|ref|ZP_08064055.1| cell division protein FtsH [Streptococcus parasanguinis ATCC 903]
 gi|296433431|gb|EFH19206.1| membrane ATPase FtsH, degrades sigma32 [Streptococcus parasanguinis
           ATCC 15912]
 gi|311097593|gb|EFQ55824.1| cell division protease FtsH [Streptococcus parasanguinis F0405]
 gi|321142811|gb|EFX38271.1| cell division protein FtsH [Streptococcus parasanguinis ATCC 903]
          Length = 657

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 263


>gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
 gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
          Length = 743

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 210 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEAKK 267

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 268 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 327

Query: 150 VFRKKLRDGEISDKEIDIEVAD 171
                LR G   DKEI++ V +
Sbjct: 328 SLDPALRRGGRFDKEINLTVPN 349


>gi|254468529|ref|ZP_05081935.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
 gi|207087339|gb|EDZ64622.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
          Length = 750

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 16/98 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   I GQ +A   ++ A++    R  L   L D     + +  GPTGVGKT +
Sbjct: 439 RNLDRDLKAIIFGQDEAINKLSTAIK--MARSGL---LSDNKPIGSFMFSGPTGVGKTEV 493

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           +++LA   G   I++++++F E            GYVG
Sbjct: 494 AKQLAYTLGIELIRIDMSEFMERHAVSKLIGAPPGYVG 531


>gi|149234641|ref|XP_001523200.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453309|gb|EDK47565.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 429

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 209 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 264


>gi|78067865|ref|YP_370634.1| AAA ATPase, central region [Burkholderia sp. 383]
 gi|77968610|gb|ABB09990.1| AAA ATPase, central region [Burkholderia sp. 383]
          Length = 326

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|331700249|ref|YP_004336488.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
 gi|326954938|gb|AEA28635.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
          Length = 871

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A R+V+ A+R R R     A + DE  P  + L +GPTGVGKT +++ L
Sbjct: 568 ELGKRVVGQAEAVRSVSDAVR-RAR-----AGIADENRPTGSFLFLGPTGVGKTELAKAL 621

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 622 AEFLFDDERAMVRIDMSEYSEKHSVARLV 650


>gi|326797842|ref|YP_004315661.1| ATPase AAA [Sphingobacterium sp. 21]
 gi|326548606|gb|ADZ76991.1| ATPase AAA-2 domain protein [Sphingobacterium sp. 21]
          Length = 859

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           IIGQ DA + +  A+      Q+  A L+D   P  + + +GPTGVGKT +++ LAR   
Sbjct: 530 IIGQDDAVKKLVKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKELARFMF 583

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
            +    I+++++++ E   V R V
Sbjct: 584 DSEDSLIQIDMSEYMEKFAVSRLV 607


>gi|301608280|ref|XP_002933705.1| PREDICTED: paraplegin-like [Xenopus (Silurana) tropicalis]
          Length = 768

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+  G     V  + ++    
Sbjct: 314 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARTR 373

Query: 110 AINIVRESRRDEVREQASINA-------EERILDALV 139
           A  IV     D V ++ S N        EE+ L+ L+
Sbjct: 374 APCIVYIDEIDAVGKKRSTNMSSFSNTEEEQTLNQLL 410


>gi|289740739|gb|ADD19117.1| 26S proteasome regulatory complex ATPase RPT3 [Glossina morsitans
           morsitans]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 165 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 219

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 220 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 245


>gi|285017507|ref|YP_003375218.1| ATP-dependent clp protease subunit protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472725|emb|CBA15230.1| putative atp-dependent clp protease subunit protein [Xanthomonas
           albilineans]
          Length = 861

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A + V+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHQRVVGQHEAIKVVSDAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F E   V R
Sbjct: 619 AEFLFDSSDAMIRIDMSEFMEKHSVAR 645


>gi|269860616|ref|XP_002650028.1| ATP-dependent 26S proteasome regulatory subunit [Enterocytozoon
           bieneusi H348]
 gi|220066579|gb|EED44056.1| ATP-dependent 26S proteasome regulatory subunit [Enterocytozoon
           bieneusi H348]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ K  V + L    + + +  D      P+ +LL GP G GKT + + +A    A 
Sbjct: 138 IQKQEIKECVELPLLQFEKYKAIGID-----PPRGVLLYGPPGTGKTMLVKAVANHTKAT 192

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FIKV  ++F +  Y+G    +++RD+  +A
Sbjct: 193 FIKVNGSEFIQ-KYLGEG-PRMVRDVFRLA 220


>gi|195438860|ref|XP_002067350.1| GK16371 [Drosophila willistoni]
 gi|194163435|gb|EDW78336.1| GK16371 [Drosophila willistoni]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|326388358|ref|ZP_08209954.1| AAA ATPase, central region [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207090|gb|EGD57911.1| AAA ATPase, central region [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 859

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+DA  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGKRVIGQKDAVTAVSKAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 621 GFMFDDDNAMVRIDMSEFMEKHSVSR 646


>gi|322412235|gb|EFY03143.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpE
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 763

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|296132448|ref|YP_003639695.1| ATP-dependent chaperone ClpB [Thermincola sp. JR]
 gi|296031026|gb|ADG81794.1| ATP-dependent chaperone ClpB [Thermincola potens JR]
          Length = 868

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + ++GQ +A RAVA A LR R       A ++D   P  + + +GPTGVGKT ++R 
Sbjct: 569 ELHKRVVGQDEAVRAVADAVLRAR-------AGIKDPNRPIGSFIFLGPTGVGKTELARA 621

Query: 73  LAR 75
           LA+
Sbjct: 622 LAQ 624


>gi|255525864|ref|ZP_05392792.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510428|gb|EET86740.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 595

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK I+L GP G GKT +++ LA   G+ FI    + F E  YVG
Sbjct: 201 IPKGIILYGPPGTGKTLLAKALAGETGSEFIPTSGSYFIE-KYVG 244


>gi|227505883|ref|ZP_03935932.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           striatum ATCC 6940]
 gi|227197511|gb|EEI77559.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           striatum ATCC 6940]
          Length = 852

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL R ++GQ++A +AV+ A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 567 AELGRRVVGQKEAVKAVSDAVR-RAR-----AGVADPNRPTGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA       +  ++++++++ E   V R V
Sbjct: 621 LADFLFDDESAMVRIDMSEYGEKHSVARLV 650


>gi|269860426|ref|XP_002649934.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7
           [Enterocytozoon bieneusi H348]
 gi|220066621|gb|EED44096.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7
           [Enterocytozoon bieneusi H348]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A FI+V  ++  +  YVG    ++IR++ ++A
Sbjct: 195 PKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELIQ-KYVGEGA-RMIREIFNLA 250


>gi|205372096|ref|ZP_03224913.1| class III stress response-related ATPase [Bacillus coahuilensis
           m4-4]
          Length = 816

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVSKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|189204256|ref|XP_001938463.1| 26S protease regulatory subunit 8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330929511|ref|XP_003302669.1| hypothetical protein PTT_14578 [Pyrenophora teres f. teres 0-1]
 gi|187985562|gb|EDU51050.1| 26S protease regulatory subunit 8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311321811|gb|EFQ89225.1| hypothetical protein PTT_14578 [Pyrenophora teres f. teres 0-1]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|153955339|ref|YP_001396104.1| FtsH3 [Clostridium kluyveri DSM 555]
 gi|146348197|gb|EDK34733.1| FtsH3 [Clostridium kluyveri DSM 555]
          Length = 588

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           MPK I+L G  G GKT +++ +A  A  PF  V  + F +I YVG    +I
Sbjct: 186 MPKGIMLYGQPGTGKTLLAKAVAGEANVPFYAVSGSDFIQI-YVGVGASRI 235


>gi|254251167|ref|ZP_04944485.1| ATP-dependent Lon protease [Burkholderia dolosa AUO158]
 gi|124893776|gb|EAY67656.1| ATP-dependent Lon protease [Burkholderia dolosa AUO158]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|226958690|ref|NP_001101926.2| AFG3(ATPase family gene 3)-like 1 [Rattus norvegicus]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 332 IPKGAMLTGPPGTGKTLLAKATAGEAKVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 388


>gi|321478088|gb|EFX89046.1| hypothetical protein DAPPUDRAFT_304599 [Daphnia pulex]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 173 KQEMREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 227

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 228 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 253


>gi|310644235|ref|YP_003948994.1| atpase aaa-2 domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309249186|gb|ADO58753.1| ATPase AAA-2 domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQEEAVKAVSRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
 gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 182 PSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 237


>gi|255282672|ref|ZP_05347227.1| negative regulator of genetic competence ClpC/MecB [Bryantella
           formatexigens DSM 14469]
 gi|255266693|gb|EET59898.1| negative regulator of genetic competence ClpC/MecB [Bryantella
           formatexigens DSM 14469]
          Length = 819

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 510 LHKRVIGQDEAVTAVAKAVK-RGR-----VGLKDPARPIGSFLFLGPTGVGKTELSKVLA 563

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
            +   +    I+V+++++ E   V R V
Sbjct: 564 EVVFGSEQSMIRVDMSEYMEKHSVSRLV 591


>gi|220920394|ref|YP_002495695.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium nodulans ORS 2060]
 gi|219945000|gb|ACL55392.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium nodulans ORS 2060]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 18/115 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R + GQ  A  A+  +++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 466 LTDSLKRVVYGQDSAIEALTASIKLAR------AGLRDPDKPIGSYLFAGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 KQLAVALGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574


>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Candidatus Methanoregula boonei
           6A8]
 gi|166199290|sp|A7I8B8|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A F++V  ++  +  Y+G    +++R+L D+A
Sbjct: 212 PKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQ-KYIGEGA-RLVRELFDLA 267


>gi|134099924|ref|YP_001105585.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008683|ref|ZP_06566656.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912547|emb|CAM02660.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 838

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL R +IGQ DA RA+A A+R R R     + + +   P  + L +GPTGVGKT 
Sbjct: 525 RNLEGELHRRVIGQDDAVRALARAVR-RSR-----SGVGNANRPVGSFLFLGPTGVGKTE 578

Query: 69  ISRRLAR-LAGAP--FIKVEVTKFTE-----------IGYVG 96
           +++ LA  L G     I++++++F E            GYVG
Sbjct: 579 LAKALAETLFGDEDRMIRLDMSEFQERHNAARLIGAPPGYVG 620


>gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 728

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 30/199 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT +++ +A  + A FI +     ++KF   G     + +I ++  +
Sbjct: 211 PKGVLLYGPPGTGKTLLAKAVANESQAHFISISGPEIMSKF--YGESEARLREIFKEARE 268

Query: 109 VAINIVRESRRDEV---REQASINAEERILDALV---------GKT---ATSNTREVFRK 153
            A +I+     D +   RE+ +   E R++  ++         GK    A +N       
Sbjct: 269 KAPSIIFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVIAATNRPNAIDP 328

Query: 154 KLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
            LR     D+EI+I+V D         I + ++P    V +  +S +    +G+  +   
Sbjct: 329 ALRRPGRFDREIEIKVPDKKGRKDILAIHSRNMPLSDDVNVEKISSVSHGYVGADLEYLC 388

Query: 209 RMSVQKC----YPELMRDE 223
           + +  KC     PEL  +E
Sbjct: 389 KEAAMKCLRRLLPELNMEE 407



 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLARLAG 78
           G +D KR +  A+   W   + P  L D+L   MP+ ILL GP+G GKT +++ +A  + 
Sbjct: 454 GLEDVKRELQEAVE--WP-MKYPG-LYDKLGHKMPRGILLHGPSGTGKTLLAKAVATQSE 509

Query: 79  APFIKVEVTKFTE--IGYVGRNVEQIIR 104
           A F+ V   +     +G   R + +I R
Sbjct: 510 ANFVSVRGPELLSKWVGESERGIREIFR 537


>gi|322490859|emb|CBZ26123.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A+ AG  F     ++F E+ +VG    + +R+L   A
Sbjct: 131 LPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEM-FVGVGARR-VRELFAAA 187


>gi|322386419|ref|ZP_08060048.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
 gi|321269505|gb|EFX52436.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
          Length = 655

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG
Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 262


>gi|308176140|ref|YP_003915546.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
           arilaitensis Re117]
 gi|307743603|emb|CBT74575.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
           arilaitensis Re117]
          Length = 852

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA  AVA A+R R R    PA       P  + L +GPTGVGKT +++ LA
Sbjct: 532 LHASVIGQKDAVSAVARAVR-RNRTGMSPAG-----RPIGSFLFLGPTGVGKTELAKALA 585

Query: 75  -RLAGAP--FIKVEVTKFTEIGYVGR 97
             L G+    ++V+++++ E   V R
Sbjct: 586 TNLFGSADSLLRVDMSEYGEKHTVAR 611


>gi|304405673|ref|ZP_07387332.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345712|gb|EFM11547.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 822

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 7/56 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           +IGQ DA +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 510 VIGQTDAVKAVSRAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|296446321|ref|ZP_06888267.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylosinus
           trichosporium OB3b]
 gi|296256222|gb|EFH03303.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylosinus
           trichosporium OB3b]
          Length = 820

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 22/120 (18%)

Query: 11  EIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVG 65
           E+++ LD    R + GQ  A  A+  A++         A LRD   P    L  GPTGVG
Sbjct: 461 EVLAHLDETLKRVVYGQDKAVTALTSAIKLAR------AGLRDPEKPIGCYLFSGPTGVG 514

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           KT  +R+LA   G   ++ +++++ E            GYVG +   ++ D +D   + V
Sbjct: 515 KTEAARQLATSLGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHCV 574


>gi|301117244|ref|XP_002906350.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
 gi|262107699|gb|EEY65751.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT +++ +A  A A F  +  +  T   +VG   E+++R L ++A
Sbjct: 170 PRGVLLFGPPGTGKTLLAKAVATEAKATFFNISASSLTS-KWVGEG-EKLVRALFEMA 225


>gi|260946507|ref|XP_002617551.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849405|gb|EEQ38869.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 425

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 205 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 260


>gi|297564379|ref|YP_003683352.1| ATP-dependent chaperone ClpB [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848828|gb|ADH70846.1| ATP-dependent chaperone ClpB [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 871

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ+DA  AV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 570 ELGRRLIGQKDAVAAVSDAVR-RAR-----AGISDPDRPTGSFLFLGPTGVGKTELAKAL 623

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 624 AEFLFDDERAIVRIDMSEYSEKHSVSRLV 652


>gi|241948885|ref|XP_002417165.1| 26S proteasome regulatory subunit 7, putative; CIM5 protein,
           putative; TAT-binding homolog 3, putative [Candida
           dubliniensis CD36]
 gi|223640503|emb|CAX44757.1| 26S proteasome regulatory subunit 7, putative [Candida dubliniensis
           CD36]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 220 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 275


>gi|195132633|ref|XP_002010747.1| GI21710 [Drosophila mojavensis]
 gi|193907535|gb|EDW06402.1| GI21710 [Drosophila mojavensis]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 149 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 203

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 204 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 229


>gi|167755257|ref|ZP_02427384.1| hypothetical protein CLORAM_00762 [Clostridium ramosum DSM 1402]
 gi|237735005|ref|ZP_04565486.1| ATPase [Mollicutes bacterium D7]
 gi|167705307|gb|EDS19886.1| hypothetical protein CLORAM_00762 [Clostridium ramosum DSM 1402]
 gi|229381781|gb|EEO31872.1| ATPase [Coprobacillus sp. D7]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +K++ ++   EI ++L+ +IIGQ  A   +   L+   + +Q  A +         L VG
Sbjct: 410 VKISEDYDYDEIKAKLNHHIIGQSKAIEQIINQLKLTKQSKQPSAVM---------LFVG 460

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKF 89
            +GVGK+  +++L++L G   I+++++++
Sbjct: 461 NSGVGKSESAKQLSKLLGRKLIRLDMSEY 489


>gi|118602880|ref|YP_904095.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567819|gb|ABL02624.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 740

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 16/111 (14%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQII 103
           + L  GPTGVGKT I ++LAR+ G   ++ +++++ E            GYVG +   ++
Sbjct: 484 SFLFAGPTGVGKTEICKQLARIMGVKLLRFDMSEYGERHSISRLIGSPPGYVGYDEGGLL 543

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDAL-VGKTATSNTREV-FR 152
            + V+ +   V     DE+ E+A ++    +L  +  GK   +N RE  FR
Sbjct: 544 TEAVNASPYAVL--LLDEI-EKAHMDIFNLLLQVMDNGKMTDANGRETDFR 591


>gi|332716895|ref|YP_004444361.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium sp.
           H13-3]
 gi|325063580|gb|ADY67270.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium sp.
           H13-3]
          Length = 874

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L + ++GQ +A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 567 DLAKSVVGQGEAVQAVSKAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKSL 620

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           AR         +++++++F E   V R
Sbjct: 621 ARFLFDDETAMVRLDMSEFMEKHSVAR 647


>gi|258591735|emb|CBE68036.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [NC10 bacterium 'Dutch sediment']
          Length = 616

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK +L+VG  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RDL
Sbjct: 204 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGAAR-VRDL 256


>gi|281207441|gb|EFA81624.1| ATP-dependent metalloprotease [Polysphondylium pallidum PN500]
          Length = 845

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK IL+ G  G GKT ++R +A  A  PF     + F E  YVG   ++ +R+L D+A
Sbjct: 491 LPKGILMSGEPGTGKTLLARAIAGEAEIPFFYTAGSSFDE-KYVGVGAKR-VRELFDLA 547


>gi|262282727|ref|ZP_06060495.1| ATP dependent Clp protease [Streptococcus sp. 2_1_36FAA]
 gi|262262018|gb|EEY80716.1| ATP dependent Clp protease [Streptococcus sp. 2_1_36FAA]
          Length = 753

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L  ++IGQ DA   +A A+R    R  L +  R    P  + L VGPTGVGKT +S
Sbjct: 441 LASDLKSHVIGQDDAVDKIAKAIR--RNRVGLGSPNR----PIGSFLFVGPTGVGKTELS 494

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+  
Sbjct: 495 KQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYEEAGQLTERVR 546

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   V K A  +   +F + L DG ++D +
Sbjct: 547 RNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 582


>gi|223933892|ref|ZP_03625856.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
 gi|223897450|gb|EEF63847.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
          Length = 742

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L  ++IGQ +A   +A A+R    R  L A  R    P  + L VGPTGVGKT +S
Sbjct: 442 LASDLKAHVIGQDEAVDKIAKAIR--RNRVGLGAPNR----PIGSFLFVGPTGVGKTELS 495

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA +L G+    I+ +++++ E   V +        LV      V      ++ E+  
Sbjct: 496 KQLAIKLFGSADSMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEKVR 547

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   V K A  +   +F + L DG ++D +
Sbjct: 548 RNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 583


>gi|158425824|ref|YP_001527116.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
 gi|158332713|dbj|BAF90198.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 879

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ +A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 564 QELAKRVIGQSEAVAAVSTAVR-RAR-----AGLQDPNRPIGSFLFIGPTGVGKTELTKA 617

Query: 73  LA 74
           LA
Sbjct: 618 LA 619


>gi|145334803|ref|NP_001078747.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332008889|gb|AED96272.1| putative ATP binding protein [Arabidopsis thaliana]
          Length = 829

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 552 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 609


>gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c]
 gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7
 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c]
          Length = 837

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A
Sbjct: 239 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEA 294


>gi|56808854|ref|ZP_00366565.1| COG0465: ATP-dependent Zn proteases [Streptococcus pyogenes M49
           591]
          Length = 364

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F E+ 
Sbjct: 188 LKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 241

Query: 94  YVGRNVEQI 102
           +VG    ++
Sbjct: 242 FVGVGASRV 250


>gi|94309563|ref|YP_582773.1| ATPase AAA-2 [Cupriavidus metallidurans CH34]
 gi|93353415|gb|ABF07504.1| Chaperone clpB (Heat-shock protein F84.1) [Cupriavidus
           metallidurans CH34]
          Length = 893

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAI 69
           E+ + L R ++GQ +A  A+  +LR         A L+ E  P  + LLVGP+GVGKT  
Sbjct: 576 ELEARLGRVVVGQDEALAALGKSLRAS------KAGLKSEEAPLGVFLLVGPSGVGKTET 629

Query: 70  SRRLARL 76
           +R LA L
Sbjct: 630 ARALADL 636


>gi|260431823|ref|ZP_05785794.1| ATP-dependent chaperone ClpB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415651|gb|EEX08910.1| ATP-dependent chaperone ClpB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 872

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           ++GQ +A RAVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A    
Sbjct: 569 VVGQDEAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVAEYLF 622

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
                 +++++++F E   V R
Sbjct: 623 DDEHAMVRIDMSEFMEKHAVAR 644


>gi|242053661|ref|XP_002455976.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
 gi|241927951|gb|EES01096.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
          Length = 736

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 14/100 (14%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA F+ + ++      + G   E+ I+ L  +A  I
Sbjct: 475 RGILLFGPPGTGKTMLAKAIANEAGASFMNISMSTIMS-KWCGE-AEKSIQALFSLAAKI 532

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
                       A I  +E  +D+L+G    SN  EV R+
Sbjct: 533 A----------PAIIFMDE--VDSLLGTRERSNENEVSRR 560


>gi|255730587|ref|XP_002550218.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404]
 gi|240132175|gb|EER31733.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 220 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 275


>gi|222153838|ref|YP_002563015.1| stress response-related Clp ATPase [Streptococcus uberis 0140J]
 gi|222114651|emb|CAR43700.1| putative stress response-related Clp ATPase [Streptococcus uberis
           0140J]
          Length = 813

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA  A++ A+R    R Q  + +R    P  + + +GPTGVGKT +++ L
Sbjct: 512 ELHKRVIGQEDAVSAISRAIR----RNQ--SGIRTGKRPIGSFMFLGPTGVGKTELAKAL 565

Query: 74  ARL 76
           A L
Sbjct: 566 AEL 568


>gi|212535936|ref|XP_002148124.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070523|gb|EEA24613.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|193213487|ref|YP_001999440.1| ATPase AAA-2 domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086964|gb|ACF12240.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 849

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A + +  A+      Q+  A L+D + P  + + +GPTGVGKT +++ 
Sbjct: 525 AELKKEVIGQDEAIKKITKAI------QRTRAGLKDPMRPIGSFIFLGPTGVGKTELAKA 578

Query: 73  LAR 75
           L R
Sbjct: 579 LTR 581


>gi|254236326|ref|ZP_04929649.1| hypothetical protein PACG_02298 [Pseudomonas aeruginosa C3719]
 gi|126168257|gb|EAZ53768.1| hypothetical protein PACG_02298 [Pseudomonas aeruginosa C3719]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTG 63
           F F P  ++  L   ++GQ  A +AV   L+       + AD+ D   P  + L +GPTG
Sbjct: 46  FRFDPAAVMDCLRAEVLGQDPALQAVEDMLK------VVRADIADPRRPLFSALFLGPTG 99

Query: 64  VGKTAISRRLAR-LAGAP--FIKVEVTKFTEIGYVG 96
           VGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 100 VGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|94988865|ref|YP_596966.1| ATP-dependent endopeptidase Clp ATP-binding subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94992755|ref|YP_600854.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS2096]
 gi|94542373|gb|ABF32422.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94546263|gb|ABF36310.1| ATP-dependent endopeptidase clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS2096]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|62734225|gb|AAX96334.1| Clp amino terminal domain, putative [Oryza sativa Japonica Group]
 gi|125576822|gb|EAZ18044.1| hypothetical protein OsJ_33590 [Oryza sativa Japonica Group]
          Length = 959

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIV--SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           K+T + S R +   S L R I+GQ +A  A++ A+R R R       LRD   P  + + 
Sbjct: 625 KVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIR-RAR-----VGLRDPRRPIASFIF 678

Query: 59  VGPTGVGKTAISRRLAR-LAGAP--FIKVEVTKFTE-----------IGYVG 96
            GPTGVGK+ +++ LA    G+P   +++++++F E            GYVG
Sbjct: 679 AGPTGVGKSELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVG 730


>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 42/175 (24%)

Query: 53  PKNILLVGPTGVGKT----AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           PK ILL GP G GKT    AI + L      PF   + T    IG V    E+ IR    
Sbjct: 73  PKGILLTGPPGCGKTALALAICKDLKENHNHPFFFRQSTAI--IGGVSGESEKNIR---- 126

Query: 109 VAINIVRESRR--------DEV------REQASINAEERILDALVGK----------TAT 144
              N+ RE++         DE+      R++AS   E RI+  L+             AT
Sbjct: 127 ---NLFREAKENSPSVIVIDEIDAIAGSRDKASKEMERRIVSELLSCLDKLPNDVFVIAT 183

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-----DIPGGASVGILNLSE 194
           ++  E     +R     D EI + V D  S I        +IP  +S+ I +L++
Sbjct: 184 TSRPETLEMAIRRSGRFDSEISLPVPDEKSRIEILQTILKEIPIASSISIDSLAK 238


>gi|94985932|ref|YP_605296.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556213|gb|ABF46127.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 623

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     P  +LLVGP G GKT +++ +A  A  P+  +  + F E+ 
Sbjct: 182 LRHPDRYHQLGARI-----PHGVLLVGPPGSGKTLLAKAVAGEAKVPYFSISGSDFVEM- 235

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 236 FVGVGAAR-VRDLFEQA 251


>gi|253990664|ref|YP_003042020.1| protein disaggregation chaperone [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782114|emb|CAQ85278.1| chaperone clpb [Photorhabdus asymbiotica]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHKRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFLFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|226288499|gb|EEH44011.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb18]
          Length = 520

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 297 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 352


>gi|125534026|gb|EAY80574.1| hypothetical protein OsI_35755 [Oryza sativa Indica Group]
          Length = 959

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIV--SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           K+T + S R +   S L R I+GQ +A  A++ A+R R R       LRD   P  + + 
Sbjct: 625 KVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIR-RAR-----VGLRDPRRPIASFIF 678

Query: 59  VGPTGVGKTAISRRLAR-LAGAP--FIKVEVTKFTE-----------IGYVG 96
            GPTGVGK+ +++ LA    G+P   +++++++F E            GYVG
Sbjct: 679 AGPTGVGKSELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVG 730


>gi|320546903|ref|ZP_08041205.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           equinus ATCC 9812]
 gi|320448421|gb|EFW89162.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           equinus ATCC 9812]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ S L   +IGQ +A  AVA A+R R R     A   +   P  + L VGPTGVGKT 
Sbjct: 409 KELASRLKGKVIGQDEAVEAVARAIR-RNR-----AGFDEGNRPIGSFLFVGPTGVGKTE 462

Query: 69  ISRRLA 74
           ++++LA
Sbjct: 463 LAKQLA 468


>gi|297796103|ref|XP_002865936.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311771|gb|EFH42195.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 552 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 609


>gi|295425666|ref|ZP_06818353.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664]
 gi|295064682|gb|EFG55603.1| cell division protein FtsH [Lactobacillus amylolyticus DSM 11664]
          Length = 716

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 224 IPSGVLLEGPPGTGKTLLARAVAGEANVPFYSMSGSDFVEM-FVGVGASR-VRDLFNNA 280


>gi|255528348|ref|ZP_05395154.1| ATP-dependent chaperone ClpB [Clostridium carboxidivorans P7]
 gi|296185567|ref|ZP_06853976.1| ATP-dependent chaperone protein ClpB [Clostridium carboxidivorans
           P7]
 gi|255507958|gb|EET84392.1| ATP-dependent chaperone ClpB [Clostridium carboxidivorans P7]
 gi|296049695|gb|EFG89120.1| ATP-dependent chaperone protein ClpB [Clostridium carboxidivorans
           P7]
          Length = 870

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 12/89 (13%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           SEL + +IGQ++A  AV+ A +R R       A ++D   P  + + +GPTGVGKT +++
Sbjct: 570 SELSQRVIGQKEAITAVSNAVIRAR-------AGMKDPKRPIGSFIFLGPTGVGKTELAK 622

Query: 72  RLARL---AGAPFIKVEVTKFTEIGYVGR 97
            LAR    +    ++++++++ E   V R
Sbjct: 623 TLARTLFDSEENIVRIDMSEYMEKYSVSR 651


>gi|222148870|ref|YP_002549827.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
 gi|221735856|gb|ACM36819.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   + GQ DA  A++ A++         A LR+   P  + +  GPTGVGKT ++++L
Sbjct: 472 ELRSVVYGQDDAIEALSTAIKLAR------AGLREPNKPIGSYVFSGPTGVGKTEVAKQL 525

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           A   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 526 AASLGVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHCV 577


>gi|242794403|ref|XP_002482365.1| proteasome regulatory particle subunit Rpt6, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218718953|gb|EED18373.1| proteasome regulatory particle subunit Rpt6, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|237837243|ref|XP_002367919.1| 26S protease regulatory subunit 6b, putative [Toxoplasma gondii
           ME49]
 gi|211965583|gb|EEB00779.1| 26S protease regulatory subunit 6b, putative [Toxoplasma gondii
           ME49]
 gi|221488833|gb|EEE27047.1| 26S protease regulatory subunit 6B, putative [Toxoplasma gondii
           GT1]
 gi|221509322|gb|EEE34891.1| 26S protease regulatory subunit 6B, putative [Toxoplasma gondii
           VEG]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P  +LL GP G GKT +++ +A    A 
Sbjct: 162 IQKQEIREAVELPLTCPELYQQIGID-----PPTGVLLYGPPGTGKTMLAKAVANNTTAT 216

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 217 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|197246424|gb|AAI68848.1| Afg3l1 protein [Rattus norvegicus]
          Length = 761

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 304 IPKGAMLTGPPGTGKTLLAKATAGEAKVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 360


>gi|195442210|ref|XP_002068851.1| GK17804 [Drosophila willistoni]
 gi|194164936|gb|EDW79837.1| GK17804 [Drosophila willistoni]
          Length = 698

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 399 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 454


>gi|194762612|ref|XP_001963428.1| GF20295 [Drosophila ananassae]
 gi|190629087|gb|EDV44504.1| GF20295 [Drosophila ananassae]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|239916715|ref|YP_002956273.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|281414827|ref|ZP_06246569.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|239837922|gb|ACS29719.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
          Length = 851

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           R +  EL R +IGQ +A ++++ A+R R R     A L+D   P  + +  GPTGVGKT 
Sbjct: 512 RTMEDELHRRVIGQDEAIKSLSRAIR-RTR-----AGLKDPNRPSGSFIFAGPTGVGKTE 565

Query: 69  ISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
           +++ LA          I +++++F E   V R
Sbjct: 566 LAKSLAEFLFGDEDALITLDMSEFQEKHTVSR 597


>gi|157151691|ref|YP_001449990.1| ATP dependent Clp protease, ATP-binding subunit, ClpE
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157076485|gb|ABV11168.1| ATP dependent Clp protease, ATP-binding subunit, ClpE
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 753

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L  ++IGQ DA   +A A+R    R  L +  R    P  + L VGPTGVGKT +S
Sbjct: 441 LASDLKSHVIGQDDAVDKIAKAIR--RNRVGLGSPNR----PIGSFLFVGPTGVGKTELS 494

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+  
Sbjct: 495 KQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYEEAGQLTERVR 546

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
            N    IL   V K A  +   +F + L DG ++D
Sbjct: 547 RNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTD 580


>gi|126274173|ref|XP_001387450.1| protease subunit component [Scheffersomyces stipitis CBS 6054]
 gi|126213320|gb|EAZ63427.1| protease subunit component [Pichia stipitis CBS 6054]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 222 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 277


>gi|18860063|ref|NP_572686.1| Rpt3 [Drosophila melanogaster]
 gi|6434950|gb|AAF08387.1|AF145306_1 26S proteasome regulatory complex subunit p48A [Drosophila
           melanogaster]
 gi|7292602|gb|AAF48001.1| Rpt3 [Drosophila melanogaster]
 gi|209417988|gb|ACI46532.1| GH06151p [Drosophila melanogaster]
 gi|301154158|emb|CBA35179.1| CG16916 protein [Drosophila melanogaster]
 gi|301154160|emb|CBA35180.1| CG16916 protein [Drosophila melanogaster]
 gi|301154162|emb|CBA35181.1| CG16916 protein [Drosophila melanogaster]
 gi|301154164|emb|CBA35182.1| CG16916 protein [Drosophila melanogaster]
 gi|301154166|emb|CBA35183.1| CG16916 protein [Drosophila melanogaster]
 gi|301154168|emb|CBA35184.1| CG16916 protein [Drosophila melanogaster]
 gi|301154170|emb|CBA35185.1| CG16916 protein [Drosophila melanogaster]
 gi|301154172|emb|CBA35186.1| CG16916 protein [Drosophila melanogaster]
 gi|301154174|emb|CBA35187.1| CG16916 protein [Drosophila melanogaster]
 gi|301154178|emb|CBA35189.1| CG16916 protein [Drosophila melanogaster]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|315223577|ref|ZP_07865432.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea F0287]
 gi|314946493|gb|EFS98487.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea F0287]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 226 IPRGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 282


>gi|311107398|ref|YP_003980251.1| chaperone protein ClpB [Achromobacter xylosoxidans A8]
 gi|310762087|gb|ADP17536.1| chaperone protein ClpB 1 [Achromobacter xylosoxidans A8]
          Length = 868

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A R V+ A+R R R     A L D   P  + L +GPTGVGKT ++R LA
Sbjct: 575 LHKRVVGQDEAVRLVSDAIR-RSR-----AGLADPSRPYGSFLFLGPTGVGKTELTRALA 628

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 629 EFLFDSEEHMIRIDMSEFMEKHSVAR 654


>gi|293606291|ref|ZP_06688652.1| chaperone protein ClpB [Achromobacter piechaudii ATCC 43553]
 gi|292815286|gb|EFF74406.1| chaperone protein ClpB [Achromobacter piechaudii ATCC 43553]
          Length = 868

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A R V+ A+R R R     A L D   P  + L +GPTGVGKT ++R LA
Sbjct: 575 LHKRVVGQDEAVRLVSDAIR-RSR-----AGLADPSRPYGSFLFLGPTGVGKTELTRALA 628

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 629 EFMFDSEEHLIRIDMSEFMEKHSVAR 654


>gi|256829858|ref|YP_003158586.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579034|gb|ACU90170.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   + GQ++A   +A A++ R R     A L +   P  + LL GPTGVGKT ++++L
Sbjct: 446 ELGSKVFGQKEAVAQLAQAIK-RSR-----AGLGNAERPLGSFLLSGPTGVGKTELAKQL 499

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGR 97
           A      F++ +++++ E   V R
Sbjct: 500 ASCLDVAFVRFDMSEYMEKHAVAR 523


>gi|116834081|gb|ABK29907.1| HslU [Buchnera aphidicola]
          Length = 44

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF+ASD +  T+ I++ YV  H+    S  D+  FIL
Sbjct: 1   EKLMEDISFNASDNKGNTIEINSNYVGEHLDQLVSNEDLSRFIL 44


>gi|77919854|ref|YP_357669.1| serine protease ATP-binding subunit [Pelobacter carbinolicus DSM
           2380]
 gi|77545937|gb|ABA89499.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pelobacter
           carbinolicus DSM 2380]
          Length = 752

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +L R + GQ  A  A+A + LR R       A L     P  + L  GPTGVGKT  +R+
Sbjct: 461 DLKRQVFGQDQAVDALARSVLRAR-------AGLGHPDKPTGSFLFTGPTGVGKTEAARQ 513

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           LA   G  FI+ +++++ E            GYVG +   ++ D V
Sbjct: 514 LALQLGVEFIRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTDAV 559


>gi|15598561|ref|NP_252055.1| chaperone [Pseudomonas aeruginosa PAO1]
 gi|12230885|sp|Q51416|AMIB_PSEAE RecName: Full=ATP-dependent protease ATP-binding subunit-like
           protein AmiB
 gi|9949499|gb|AAG06753.1|AE004758_10 probable chaperone [Pseudomonas aeruginosa PAO1]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLV 59
           ++  F F P  ++  L   ++GQ  A +AV   L+       + AD+ D   P  + L +
Sbjct: 42  LRSRFRFDPAAVMDCLRAEVLGQDPALQAVEDMLK------VVRADIADPRRPLFSALFL 95

Query: 60  GPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVG 96
           GPTGVGKT I R LAR L G    F +V++   ++  Y  
Sbjct: 96  GPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAA 135


>gi|296185108|ref|ZP_06853518.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049942|gb|EFG89366.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 491

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK I+L GP G GKT +++ LA   G+ FI    + F E  YVG
Sbjct: 97  IPKGIILYGPPGTGKTLLAKALAGETGSEFIPTSGSYFIE-KYVG 140


>gi|256820481|ref|YP_003141760.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea DSM
           7271]
 gi|256582064|gb|ACU93199.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea DSM
           7271]
          Length = 652

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 226 IPRGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 282


>gi|170037747|ref|XP_001846717.1| 26S protease regulatory subunit 6B [Culex quinquefasciatus]
 gi|167881063|gb|EDS44446.1| 26S protease regulatory subunit 6B [Culex quinquefasciatus]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 163 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 217

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 218 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 245


>gi|170066801|ref|XP_001868229.1| fidgetin [Culex quinquefasciatus]
 gi|167862972|gb|EDS26355.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GP G GKT I + +A  + A F  +  +  T   ++G   E+++R L  VA
Sbjct: 365 PRGILLFGPPGTGKTLIGKCIASQSNATFFSISASSLTS-KWIGEG-EKMVRTLFAVA 420


>gi|146102932|ref|XP_001469447.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase [Leishmania
           infantum]
 gi|134073817|emb|CAM72556.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania
           infantum JPCM5]
 gi|322503637|emb|CBZ38723.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A+ AG  F     ++F E+ +VG    + +R+L   A
Sbjct: 131 LPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEM-FVGVGARR-VRELFAAA 187


>gi|50426999|ref|XP_462104.1| DEHA2G13024p [Debaryomyces hansenii CBS767]
 gi|49657774|emb|CAG90590.1| DEHA2G13024p [Debaryomyces hansenii]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 207 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 262


>gi|115485055|ref|NP_001067671.1| Os11g0267400 [Oryza sativa Japonica Group]
 gi|62734176|gb|AAX96285.1| Clp amino terminal domain, putative [Oryza sativa Japonica Group]
 gi|77549794|gb|ABA92591.1| ATP-dependent Clp protease ATP-binding subunit clpA
           CD4B,chloroplast precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113644893|dbj|BAF28034.1| Os11g0267400 [Oryza sativa Japonica Group]
          Length = 932

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 2   KLTFNFSPREIV--SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           K+T + S R +   S L R I+GQ +A  A++ A+R R R       LRD   P  + + 
Sbjct: 598 KVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIR-RAR-----VGLRDPRRPIASFIF 651

Query: 59  VGPTGVGKTAISRRLAR-LAGAP--FIKVEVTKFTE-----------IGYVG 96
            GPTGVGK+ +++ LA    G+P   +++++++F E            GYVG
Sbjct: 652 AGPTGVGKSELAKALAAYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVG 703


>gi|39939000|ref|NP_950766.1| hypothetical protein PAM_514 [Onion yellows phytoplasma OY-M]
 gi|39722109|dbj|BAD04599.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 596

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 28/145 (19%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQI--- 102
           D++ PK  LL GP G GKT + + L   A   FI +   KF +  Y+G   + VE++   
Sbjct: 279 DQVRPKGYLLYGPPGTGKTFLIKALCGEANVHFINLIPAKFRQ-KYIGEGEKEVEKVWQE 337

Query: 103 --IRDLVDVAINIVR--ESRRDEVREQASINAEERILDALVGKT----------ATSNTR 148
             I D   + I+ +   E+R D       +N    +LD L G            AT+N  
Sbjct: 338 AEIHDKTIIFIDEIEGLENRNDSNISSGGVNVINTLLDKLDGFNSSNKKIVLMGATNNLH 397

Query: 149 EV-------FRKKLRDGEISDKEID 166
           ++       F K++  G + D EI+
Sbjct: 398 KIDTALRSRFSKEIYIGHLKDSEIE 422


>gi|88809567|ref|ZP_01125074.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. WH 7805]
 gi|88786317|gb|EAR17477.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. WH 7805]
          Length = 872

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL   ++GQQ A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +S+ 
Sbjct: 571 TELHERVVGQQQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 624

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    ++++++++ E   V R
Sbjct: 625 LAAQLFDSEDAMVRIDMSEYMEKHTVSR 652


>gi|67465072|ref|XP_648721.1| 26s proteasome subunit P45 family protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|167386634|ref|XP_001737848.1| 26S protease regulatory subunit 6B [Entamoeba dispar SAW760]
 gi|56464969|gb|EAL43335.1| 26s proteasome subunit P45 family protein, putative [Entamoeba
           histolytica HM-1:IMSS]
 gi|165899300|gb|EDR25939.1| 26S protease regulatory subunit 6B, putative [Entamoeba dispar
           SAW760]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      +Q+  D      P+  LL GP G GKT +++ +A    A 
Sbjct: 143 IQKQEIREAVELPLTQSELYKQIGID-----PPRGCLLYGPPGTGKTMLAKAVAHHTSAS 197

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI++  ++F +  Y+G    +++RD+  +A
Sbjct: 198 FIQIVGSEFAQ-QYLGEG-PRMVRDVFRLA 225


>gi|68481174|ref|XP_715502.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|68481315|ref|XP_715432.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|46437054|gb|EAK96407.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|46437126|gb|EAK96478.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 234 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 289


>gi|310792457|gb|EFQ27984.1| ATP-dependent metallopeptidase HflB [Glomerella graminicola M1.001]
          Length = 892

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 433 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGPSR-VRDLFATA 489


>gi|290476239|ref|YP_003469139.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus bovienii SS-2004]
 gi|289175572|emb|CBJ82375.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus bovienii SS-2004]
          Length = 860

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AV+ A+R R R     A L D   P  + + +GPTGVGKT + + L
Sbjct: 568 ELHKRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFMFLGPTGVGKTELCKAL 621

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 622 ANFLFDSDDAMVRLDMSEFMEKHTVSRLV 650


>gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
 gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
          Length = 903

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LLVGP G GKT +++ +A  AGA F  +     ++K+  +G    N+ +I  +  +
Sbjct: 213 PKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKY--VGETEENLRKIFEEAEE 270

Query: 109 VAINIVRESRRDEV---REQASINAEER-------ILDALVGK-----TATSNTREVFRK 153
            A +I+     D +   R++AS   E R       ++D L G+        +N       
Sbjct: 271 NAPSIIFIDELDAIAPKRDEASGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDP 330

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR     D+EI I V D
Sbjct: 331 ALRRPGRFDREIVIGVPD 348



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDL 106
           PK +LL GP G GKT +++ +A  +GA FI V   K  EI   +VG + E+ IR++
Sbjct: 486 PKGVLLFGPPGTGKTLLAKAVANESGANFISV---KGPEIFSKWVGES-EKAIREI 537


>gi|145341280|ref|XP_001415741.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144575964|gb|ABO94033.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 807

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + +IGQ+ A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 488 QLEAELHQRVIGQEAAVTSVAEAV------QRSRADLADPNGPVASFMFLGPTGVGKTEL 541

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           ++ LA     +    ++++++++ E   V R
Sbjct: 542 AKALASYLFNSDTALVRLDMSEYMEKHSVAR 572


>gi|156744265|ref|YP_001434394.1| ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156235593|gb|ABU60376.1| ATPase AAA-2 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 402

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 19/107 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAIS 70
           I   L   I GQ+ A  A+ I + NR R      + R    P+  +L +GPTGVGKT  +
Sbjct: 22  IEQSLRNAIFGQERAIEAI-IRVLNRARFGFAAGNAR---RPRATLLFLGPTGVGKTETA 77

Query: 71  RRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVEQII 103
           RRLA+L    G  F+K++ + F++       +G    YVGR+ + ++
Sbjct: 78  RRLAQLLRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQKPLL 124


>gi|157877019|ref|XP_001686849.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase
 gi|68129924|emb|CAJ09230.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain
           Friedlin]
          Length = 571

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A+ AG  F     ++F E+ +VG    + +R+L   A
Sbjct: 131 LPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEM-FVGVGARR-VRELFAAA 187


>gi|150390582|ref|YP_001320631.1| ATPase [Alkaliphilus metalliredigens QYMF]
 gi|149950444|gb|ABR48972.1| ATPase AAA-2 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 771

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 22/96 (22%)

Query: 16  LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L R +IGQ +A  ++A  +R NR       A  R +  P + + VGPTGVGKT + + LA
Sbjct: 479 LHRRVIGQHEAITSLARTIRRNR-------AGFRKKKRPASFIFVGPTGVGKTELVKTLA 531

Query: 75  -RLAG--APFIKVEVTKFTE-----------IGYVG 96
             L G     I+++++++ E            GYVG
Sbjct: 532 IELFGNEEALIRMDMSEYMEKHTVSKLIGAPPGYVG 567


>gi|125983472|ref|XP_001355501.1| GA14216 [Drosophila pseudoobscura pseudoobscura]
 gi|195174295|ref|XP_002027914.1| GL27100 [Drosophila persimilis]
 gi|54643817|gb|EAL32560.1| GA14216 [Drosophila pseudoobscura pseudoobscura]
 gi|194115603|gb|EDW37646.1| GL27100 [Drosophila persimilis]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|323304204|gb|EGA57980.1| Rpt1p [Saccharomyces cerevisiae FostersB]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 298


>gi|302831011|ref|XP_002947071.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
 gi|300267478|gb|EFJ51661.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
          Length = 416

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 7/92 (7%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
           Y + +Q+ + AV + L      +Q+  D      P+ +LL GP G GKT +++ +A    
Sbjct: 165 YDMQKQEIREAVELPLVQADLYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTT 219

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 220 AAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|239832058|ref|ZP_04680387.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ochrobactrum
           intermedium LMG 3301]
 gi|239824325|gb|EEQ95893.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ochrobactrum
           intermedium LMG 3301]
          Length = 824

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 466 AELKRVVYGQDLAIEALSASIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVAKQ 519

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 LASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572


>gi|150951374|ref|XP_001387688.2| 26S proteasome regulatory subunit [Scheffersomyces stipitis CBS
           6054]
 gi|149388540|gb|EAZ63665.2| 26S proteasome regulatory subunit [Pichia stipitis CBS 6054]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 207 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 262


>gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum
           labreanum Z]
 gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 810

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT I+R +A  AGA F  +     ++K+   G     + +I     +
Sbjct: 237 PKGVLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKY--YGDSEEKLREIFEKAEE 294

Query: 109 VAINIVRESRRDEV---REQASINAEERILDALV---------GKT---ATSNTREVFRK 153
            A +I+     D +   RE++    E R++  L+         GK    A +N  +    
Sbjct: 295 NAPSIIFIDEIDSIAPKREESKGEVERRVVAQLLSLMDGLKSRGKVIVIAATNLPDSIDP 354

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR G   D+EI+I V D
Sbjct: 355 ALRRGGRFDREIEIGVPD 372


>gi|332298399|ref|YP_004440321.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332181502|gb|AEE17190.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 616

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK  ++     L+N  +   + A +     P  ILLVG  G GKT ++R +A  
Sbjct: 170 VAGQEEAKNELSDVIDFLKNPQKYLDMGAKI-----PTGILLVGNPGTGKTLLARAVAGE 224

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           AG  F+ +  + F E+ +VG    + +RDL +
Sbjct: 225 AGVAFLHISGSDFVEM-FVGVGASR-VRDLFE 254


>gi|253754969|ref|YP_003028109.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
           BM407]
 gi|251817433|emb|CAZ55173.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus suis BM407]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNHPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|222478623|ref|YP_002564860.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL +VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVH-KFIGEGA-KLVRDLFEVA 238


>gi|213962449|ref|ZP_03390711.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
 gi|213954775|gb|EEB66095.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
          Length = 655

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 226 IPRGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 282


>gi|195048493|ref|XP_001992538.1| GH24150 [Drosophila grimshawi]
 gi|193893379|gb|EDV92245.1| GH24150 [Drosophila grimshawi]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 162 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 216

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 217 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|194889842|ref|XP_001977168.1| GG18392 [Drosophila erecta]
 gi|190648817|gb|EDV46095.1| GG18392 [Drosophila erecta]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 164 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 218

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 219 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|169347218|ref|ZP_02866157.1| clpB protein [Clostridium perfringens C str. JGS1495]
 gi|169296614|gb|EDS78745.1| clpB protein [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|167378436|ref|XP_001734800.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165903522|gb|EDR29030.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  T+  +  Y+G    +++R+L  +A
Sbjct: 175 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQ-KYIGEG-SRMVRELFVMA 230


>gi|91080769|ref|XP_967976.1| PREDICTED: similar to Rpt3 CG16916-PA [Tribolium castaneum]
 gi|270005883|gb|EFA02331.1| hypothetical protein TcasGA2_TC007999 [Tribolium castaneum]
          Length = 409

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 165 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 219

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 220 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 245


>gi|323342363|ref|ZP_08082595.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463475|gb|EFY08669.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 631

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++  A  A  PF  +  + F E+ +VG    + +RD+   A
Sbjct: 194 IPKGMLLVGPPGTGKTLLAKAAAGEADVPFYAISGSDFVEM-FVGVGASR-VRDMFKKA 250


>gi|312372712|gb|EFR20610.1| hypothetical protein AND_19789 [Anopheles darlingi]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 168 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 222

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 223 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 765

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDV 109
           PK +LL GP G GKT I++ +A    A FI +   +     Y G + +Q   I ++  D 
Sbjct: 215 PKGVLLYGPPGTGKTMIAKAVASETDANFISISGPEIMS-KYYGESEKQLRDIFKEAEDN 273

Query: 110 AINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRKK 154
           A +I+     D +   RE+ +   E R+       +D L  +      A +N        
Sbjct: 274 APSIIFIDEIDSIAPRREEVTGEVERRVVAQLLALMDGLQARGQVIVVAATNRPNAVDPA 333

Query: 155 LRDGEISDKEIDIEVAD 171
           LR G   D+EI+I V D
Sbjct: 334 LRRGGRFDREIEIGVPD 350


>gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
 gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL  VA
Sbjct: 183 PSGVLLYGPPGTGKTMLAKAVANQTNATFIKMAGSELVH-KFIGEGA-KLVRDLFKVA 238


>gi|72163275|ref|YP_290932.1| ATPase [Thermobifida fusca YX]
 gi|71917007|gb|AAZ56909.1| ATPase [Thermobifida fusca YX]
          Length = 830

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +A++ A+R R R     A L+D   P  + +  GP+GVGKT + + L
Sbjct: 509 ELHKRVIGQDDAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELCKAL 562

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 563 AEFLFGDEDALIQLDMSEFMEKHTVSR 589


>gi|6322704|ref|NP_012777.1| Rpt1p [Saccharomyces cerevisiae S288c]
 gi|464862|sp|P33299|PRS7_YEAST RecName: Full=26S protease regulatory subunit 7 homolog; AltName:
           Full=Protein CIM5; AltName: Full=Tat-binding homolog 3
 gi|313882|emb|CAA51973.1| YTA3 [Saccharomyces cerevisiae]
 gi|410510|emb|CAA80470.1| putative ATPase [Saccharomyces cerevisiae]
 gi|486249|emb|CAA81986.1| YTA3 [Saccharomyces cerevisiae]
 gi|151941662|gb|EDN60024.1| ATPase [Saccharomyces cerevisiae YJM789]
 gi|190409693|gb|EDV12958.1| 26S protease subunit component [Saccharomyces cerevisiae RM11-1a]
 gi|256271083|gb|EEU06182.1| Rpt1p [Saccharomyces cerevisiae JAY291]
 gi|285813120|tpg|DAA09017.1| TPA: Rpt1p [Saccharomyces cerevisiae S288c]
 gi|323332722|gb|EGA74127.1| Rpt1p [Saccharomyces cerevisiae AWRI796]
 gi|738777|prf||2001430A 26S protease
          Length = 467

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 298


>gi|330012953|ref|ZP_08307535.1| ATP-dependent chaperone protein ClpB [Klebsiella sp. MS 92-3]
 gi|328533637|gb|EGF60348.1| ATP-dependent chaperone protein ClpB [Klebsiella sp. MS 92-3]
          Length = 861

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQDEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|300697571|ref|YP_003748232.1| protease ATP-dependent zinc-metallo, cell division protein ftsH
           homolog [Ralstonia solanacearum CFBP2957]
 gi|299074295|emb|CBJ53842.1| protease, ATP-dependent zinc-metallo, cell division protein ftsH
           homolog [Ralstonia solanacearum CFBP2957]
          Length = 646

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVG  G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 204 IPKGVLLVGAPGTGKTLLAKAVAGEAAVPFFSMSGSDFVEM-FVGVGAAR-VRDLFNQA 260


>gi|253577148|ref|ZP_04854468.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843392|gb|EES71420.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHERVIGQEEAVKAVSRAIR-RAR-----AGLKDPKRPMGSFIFLGPTGVGKTELARALA 559


>gi|195479503|ref|XP_002100910.1| GE15910 [Drosophila yakuba]
 gi|194188434|gb|EDX02018.1| GE15910 [Drosophila yakuba]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|170028516|ref|XP_001842141.1| fidgetin [Culex quinquefasciatus]
 gi|167876263|gb|EDS39646.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ ILL GP G GKT I + +A  + A F  +  +  T   ++G   E+++R L  VA
Sbjct: 365 PRGILLFGPPGTGKTLIGKCIASQSNATFFSISASSLTS-KWIGEG-EKMVRTLFAVA 420


>gi|92117937|ref|YP_577666.1| ATPase AAA-2 [Nitrobacter hamburgensis X14]
 gi|91800831|gb|ABE63206.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrobacter
           hamburgensis X14]
          Length = 799

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT ++++LA
Sbjct: 466 LKRVVFGQDLAIEALTAAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQLA 519

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 AAMGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570


>gi|42522811|ref|NP_968191.1| ATP-dependent Clp protease subunit [Bdellovibrio bacteriovorus
           HD100]
 gi|39574007|emb|CAE79184.1| ATP-dependent Clp protease subunit [Bdellovibrio bacteriovorus
           HD100]
          Length = 776

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           + L  GPTGVGKT + R+LA + G  F + +++++ E   V R V
Sbjct: 503 SFLFTGPTGVGKTEVCRQLATIMGVHFERFDMSEYMEKHAVARMV 547


>gi|12621118|ref|NP_075236.1| caseinolytic peptidase B protein homolog [Rattus norvegicus]
 gi|25009257|sp|Q9WTT2|CLPB_RAT RecName: Full=Caseinolytic peptidase B protein homolog; AltName:
           Full=Suppressor of potassium transport defect 3
 gi|4958935|dbj|BAA78095.1| SKD3 [Rattus norvegicus]
          Length = 677

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 16/83 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L+++IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 313 LEQHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 363

Query: 73  LARL----AGAPFIKVEVTKFTE 91
            A+     A   FI++++++F E
Sbjct: 364 TAKYMHKDAKKGFIRLDMSEFQE 386


>gi|332686153|ref|YP_004455927.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Melissococcus
           plutonius ATCC 35311]
 gi|332370162|dbj|BAK21118.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Melissococcus
           plutonius ATCC 35311]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 23/161 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + +  +L  ++IGQ DA   VA A+R NR    +Q  P          + L VGPTGVGK
Sbjct: 438 KNLSDDLRAHVIGQDDAVDRVAKAIRRNRVGLGKQNRPIG--------SFLFVGPTGVGK 489

Query: 67  TAISRRLA-RLAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++R+LA  L G+    I+ +++++ E   V R        L+      V      ++ 
Sbjct: 490 TELARQLAYELFGSDNSMIRFDMSEYMEKHSVSR--------LIGSPPGYVGYEEAGQLT 541

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           EQ   N    +L   V K A  +   VF + L DG ++D +
Sbjct: 542 EQIRRNPYSLVLLDEVEK-AHPDVLHVFLQILDDGRLTDAQ 581


>gi|251782902|ref|YP_002997205.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391532|dbj|BAH81991.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323127707|gb|ADX25004.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpE
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 763

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|313116981|ref|YP_004038105.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551]
 gi|312294933|gb|ADQ68969.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551]
          Length = 513

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
           ILL GP G GKT +SR LA   G PF+++     T   +VG++ + + +
Sbjct: 272 ILLHGPPGTGKTYVSRALAGELGRPFLRITPANVTS-KFVGKSADNVAK 319


>gi|227500854|ref|ZP_03930903.1| ATPase with chaperone activity, ATP-binding subunit [Anaerococcus
           tetradius ATCC 35098]
 gi|227216958|gb|EEI82343.1| ATPase with chaperone activity, ATP-binding subunit [Anaerococcus
           tetradius ATCC 35098]
          Length = 814

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ+DA  +VA +++ R R       L+D   P  + + VGPTGVGKT +++ L
Sbjct: 494 ELKMAVIGQKDAIDSVARSIK-RAR-----VGLKDPKKPIGSFIFVGPTGVGKTYLAKTL 547

Query: 74  AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99
           A+ L G+    I+++++++ E   V R V
Sbjct: 548 AQDLFGSVDKLIRIDMSEYMEKFAVSRLV 576


>gi|207343610|gb|EDZ71027.1| YKL145Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 271

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 47  PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 102


>gi|152971442|ref|YP_001336551.1| protein disaggregation chaperone [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956291|gb|ABR78321.1| ATP-dependent protease, Hsp 100 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQDEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|332749315|gb|EGJ79736.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella
           flexneri 4343-70]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+    +PK I L+GPT  GKTA++  L ++     I V+   + K   IG    N E+
Sbjct: 2   SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMVIGTAKPNAEE 61

Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142
           ++     L+D+          + RRD + E A I A  RI   LVG T
Sbjct: 62  LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|328868721|gb|EGG17099.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 756

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT ++R +A  +G     +      +   G   + ++ I RD    A
Sbjct: 251 PRGVLLYGPPGTGKTMLARTVASESGCTLFTMNGADILDKYYGVTEKAIQSIFRDAAQRA 310

Query: 111 INIVRESRRDEV---REQASINAEERILDALV 139
            +I+     D +   R+QA+   E+R++  L+
Sbjct: 311 PSIIFIDELDALCPKRDQATTEIEKRLVGCLL 342



 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S RE++ E+ +     I GQ D K  +  A+   W  +   A  R  + P K ILL GP 
Sbjct: 478 SMREVIVEVPKVKWEDIGGQDDIKEKLKEAIE--WPLKHPAAFERMGIRPPKGILLYGPP 535

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G  KT +++ LA  +G  FI V+  +     +VG + E+ +RD+   A
Sbjct: 536 GCSKTLLAKALATESGLNFIAVKGPELIS-KWVGES-ERAVRDIFKKA 581


>gi|313232390|emb|CBY24057.1| unnamed protein product [Oikopleura dioica]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+GQ++AK A+  ++    ++ QL   L+     + ILL GP G GKT++ +  A  A A
Sbjct: 154 IVGQEEAKVALIQSVILPIKQPQLFEGLKQW---RRILLYGPPGTGKTSLVKCTAAAANA 210

Query: 80  PFIKVEVTKFTE--IGYVGRNVEQIIRD 105
           PF  V  +      +G   + V +I  D
Sbjct: 211 PFYSVTCSTLLSPYLGESEKRVREIFSD 238


>gi|295698896|ref|YP_003606789.1| ATPase AAA [Burkholderia sp. CCGE1002]
 gi|295438109|gb|ADG17278.1| ATPase associated with various cellular activities AAA_3
          [Burkholderia sp. CCGE1002]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 16/78 (20%)

Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
          ++I +E+ R ++GQQ   R + +AL  R                 ++LL G  GVGKT +
Sbjct: 15 QQIENEVARVVVGQQQTLRLINVALFAR----------------GHVLLEGGVGVGKTTV 58

Query: 70 SRRLARLAGAPFIKVEVT 87
           R  AR+ G  F +VE T
Sbjct: 59 LRAFARVVGGDFERVEGT 76


>gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 693

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT+I+  LA     PFI +        G  G + E+ IRDL D A
Sbjct: 95  PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVS-GMSGES-EKKIRDLFDEA 150


>gi|198413872|ref|XP_002128188.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit,
           ATPase 2 [Ciona intestinalis]
          Length = 433

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGILLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|168216816|ref|ZP_02642441.1| clpB protein [Clostridium perfringens NCTC 8239]
 gi|182381023|gb|EDT78502.1| clpB protein [Clostridium perfringens NCTC 8239]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|168206333|ref|ZP_02632338.1| clpB protein [Clostridium perfringens E str. JGS1987]
 gi|168210020|ref|ZP_02635645.1| clpB protein [Clostridium perfringens B str. ATCC 3626]
 gi|170662172|gb|EDT14855.1| clpB protein [Clostridium perfringens E str. JGS1987]
 gi|170711834|gb|EDT24016.1| clpB protein [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|110798650|ref|YP_696119.1| clpB protein [Clostridium perfringens ATCC 13124]
 gi|110673297|gb|ABG82284.1| clpB protein [Clostridium perfringens ATCC 13124]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|83589177|ref|YP_429186.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572091|gb|ABC18643.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG-YVGRNVEQIIRDL 106
           +P+ ILL GP G GKT+ +R  AR  G  F  V  +    IG YVG + E  +R+L
Sbjct: 205 LPRGILLYGPPGTGKTSFARAAARYFGCSFYAVNASSL--IGRYVGTS-EANLRNL 257


>gi|115525405|ref|YP_782316.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris BisA53]
 gi|115519352|gb|ABJ07336.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris BisA53]
          Length = 804

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L R + GQ  A  ++A +++         A LR+   P  + L  GPTGVGKT 
Sbjct: 458 KHLETTLKRVVFGQDKAIESLAASIK------LARAGLREPEKPIGSYLFSGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 512 VAKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 562


>gi|71897612|ref|ZP_00679857.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
 gi|71732515|gb|EAO34568.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
          Length = 758

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           N LL GPTGVGKT ++++LA   G   ++ +++++ E   V R
Sbjct: 491 NFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSR 533


>gi|313231887|emb|CBY08999.1| unnamed protein product [Oikopleura dioica]
          Length = 775

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT + +  A  AG  FI V  ++F E+ +VG    + +RD+ + A
Sbjct: 327 IPKGAILNGPPGTGKTLLGKATAGEAGVTFISVNGSEFQEM-FVGVGAAR-VRDMFNTA 383


>gi|296284569|ref|ZP_06862567.1| ATP-dependent Clp protease [Citromicrobium bathyomarinum JL354]
          Length = 859

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+ A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGKRVIGQEAAVEAVSKAVR-RAR-----AGLKDPGRPLGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
           +         +++++++F E   V R
Sbjct: 621 QFLFDDDNAMVRIDMSEFMEKHAVAR 646


>gi|210620978|ref|ZP_03292363.1| hypothetical protein CLOHIR_00306 [Clostridium hiranonis DSM 13275]
 gi|210154962|gb|EEA85968.1| hypothetical protein CLOHIR_00306 [Clostridium hiranonis DSM 13275]
          Length = 864

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 9/63 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL + +IGQ  A  AV+ A +R R       A L+DE  P  + + +GPTGVGKT +++ 
Sbjct: 572 ELHKRVIGQDKAVTAVSDAVIRAR-------AGLKDENKPIGSFIFLGPTGVGKTELAKT 624

Query: 73  LAR 75
           LAR
Sbjct: 625 LAR 627


>gi|209559675|ref|YP_002286147.1| Putative ATP-dependent protease [Streptococcus pyogenes NZ131]
 gi|209540876|gb|ACI61452.1| Putative ATP-dependent protease [Streptococcus pyogenes NZ131]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|270307500|ref|YP_003329558.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. VS]
 gi|270153392|gb|ACZ61230.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. VS]
          Length = 824

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   ++ A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 508 LHERIIGQEEAIVTISKAVR-RAR-----AGLKDPRHPIGNFVFLGPTGVGKTELARALA 561

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 562 QFMFGSEDALVRLDMSEFMEKFAVSRLV 589


>gi|139473467|ref|YP_001128183.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|134271714|emb|CAM29947.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Streptococcus pyogenes str. Manfredo]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|110801619|ref|YP_698735.1| clpB protein [Clostridium perfringens SM101]
 gi|110682120|gb|ABG85490.1| clpB protein [Clostridium perfringens SM101]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|71903841|ref|YP_280644.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS6180]
 gi|94990765|ref|YP_598865.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS10270]
 gi|306827043|ref|ZP_07460341.1| ATP-dependent Clp protease [Streptococcus pyogenes ATCC 10782]
 gi|71802936|gb|AAX72289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS6180]
 gi|94544273|gb|ABF34321.1| ATP-dependent endopeptidase clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS10270]
 gi|304430789|gb|EFM33800.1| ATP-dependent Clp protease [Streptococcus pyogenes ATCC 10782]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|297182165|gb|ADI18337.1| ATPases with chaperone activity, ATP-binding subunit [uncultured
           Rhodobacterales bacterium HF4000_03E16]
          Length = 891

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R ++GQ  A +AV+ A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 583 DLHRRVVGQNQAVKAVSNAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 636

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 637 ADFLFDDDNAMVRIDMSEFMEKHAVAR 663


>gi|303232427|ref|ZP_07319119.1| putative negative regulator of genetic competence ClpC/MecB
           [Atopobium vaginae PB189-T1-4]
 gi|302481511|gb|EFL44579.1| putative negative regulator of genetic competence ClpC/MecB
           [Atopobium vaginae PB189-T1-4]
          Length = 904

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL ++I+GQ++A + V+  +R    R + P  L+D   P  + + +GP+GVGKT +++ L
Sbjct: 544 ELHKHIVGQEEAVKKVSACIR----RSRSP--LKDPRRPGGSFMFLGPSGVGKTELAKTL 597

Query: 74  ARL 76
           A  
Sbjct: 598 AEF 600


>gi|299753795|ref|XP_002911915.1| prsS7 [Coprinopsis cinerea okayama7#130]
 gi|298410465|gb|EFI28421.1| prsS7 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 231 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 286


>gi|293391250|ref|ZP_06635584.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951784|gb|EFE01903.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 856

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 SFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|213420713|ref|ZP_03353779.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 290

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 194 ELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 247

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 248 ANFMFDSDDAMVRIDMSEFMEKHSVSRLV 276


>gi|196233971|ref|ZP_03132808.1| ATP-dependent chaperone ClpB [Chthoniobacter flavus Ellin428]
 gi|196222020|gb|EDY16553.1| ATP-dependent chaperone ClpB [Chthoniobacter flavus Ellin428]
          Length = 856

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           +IGQ+ A  AV+ A+R R R     A L+DE  P  + + +GPTGVGKT ++R LA    
Sbjct: 572 VIGQKQAITAVSNAVR-RAR-----AGLQDENRPVGSFIFLGPTGVGKTELARALAEFLF 625

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
              +  ++++++++ E   V R
Sbjct: 626 DDESAMVRIDMSEYMEKHSVAR 647


>gi|195399365|ref|XP_002058291.1| GJ15572 [Drosophila virilis]
 gi|194150715|gb|EDW66399.1| GJ15572 [Drosophila virilis]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 164 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTASFI 218

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 244


>gi|168214442|ref|ZP_02640067.1| clpB protein [Clostridium perfringens CPE str. F4969]
 gi|170714087|gb|EDT26269.1| clpB protein [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|153009351|ref|YP_001370566.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561239|gb|ABS14737.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ochrobactrum
           anthropi ATCC 49188]
          Length = 824

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 466 AELKRVVYGQDLAIEALSASIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVAKQ 519

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 LASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572


>gi|157115654|ref|XP_001652644.1| 26S protease regulatory subunit 6b [Aedes aegypti]
 gi|108876791|gb|EAT41016.1| 26S protease regulatory subunit 6b [Aedes aegypti]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 214 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAA 268

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 269 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 296


>gi|57233578|ref|YP_180810.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Dehalococcoides ethenogenes 195]
 gi|57224026|gb|AAW39083.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Dehalococcoides ethenogenes 195]
          Length = 824

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   ++ A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 508 LHERIIGQEEAIVTISKAVR-RAR-----AGLKDPRHPIGNFVFLGPTGVGKTELARALA 561

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 562 QFMFGSEDALVRLDMSEFMEKFAVSRLV 589


>gi|18310410|ref|NP_562344.1| clpB protein [Clostridium perfringens str. 13]
 gi|54035872|sp|Q8XKG8|CLPB_CLOPE RecName: Full=Chaperone protein ClpB
 gi|18145090|dbj|BAB81134.1| clpB protein [Clostridium perfringens str. 13]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|332211399|ref|XP_003254807.1| PREDICTED: caseinolytic peptidase B protein homolog isoform 1
           [Nomascus leucogenys]
          Length = 506

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 27/100 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 142 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 192

Query: 73  LARL----AGAPFIKVEVTKFTE-----------IGYVGR 97
            A+     A   FI++++++F E            GYVG 
Sbjct: 193 TAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGH 232


>gi|298714687|emb|CBJ27612.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ K AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 170 KQEVKEAVELPLTHFDLYKQIGIDP-----PRGVLMYGPPGTGKTMMAKAVANATSASFI 224

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            V  ++F +  Y+G    +++RD+  +A
Sbjct: 225 SVVGSEFVQ-KYLGEG-PRMVRDVFRLA 250


>gi|300722275|ref|YP_003711559.1| ATP-dependent protease [Xenorhabdus nematophila ATCC 19061]
 gi|297628776|emb|CBJ89354.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus nematophila ATCC
           19061]
          Length = 857

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A  AV+ A+R R R     A L D   P  + + +GPTGVGKT + + L
Sbjct: 565 ELHKRVIGQNEAVDAVSNAIR-RSR-----AGLSDPNRPIGSFMFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|317131213|ref|YP_004090527.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469192|gb|ADU25796.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 825

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A  AVA A+R R R       L+D   P  + + +GPTGVGKT +S+ LA
Sbjct: 518 LHKRVVGQNEAVAAVAKAIR-RGR-----VGLKDPKRPVGSFIFLGPTGVGKTELSKALA 571

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGRNV 99
             L G     I+V+++++ E   V R V
Sbjct: 572 EALFGDENAMIRVDMSEYMEKHTVSRMV 599


>gi|257454777|ref|ZP_05620028.1| ATP-dependent chaperone protein ClpB [Enhydrobacter aerosaccus
           SK60]
 gi|257447710|gb|EEV22702.1| ATP-dependent chaperone protein ClpB [Enhydrobacter aerosaccus
           SK60]
          Length = 865

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           +L   ++GQ +A +AVA A+R R R     A L D   P  + L +GPTGVGKT +++ L
Sbjct: 569 KLHERVVGQDEAVQAVANAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELTKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 623 ASFLFDDENAMIRIDMSEFMEKHSVSR 649


>gi|269836528|ref|YP_003318756.1| ATPase AAA-2 domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785791|gb|ACZ37934.1| ATPase AAA-2 domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 817

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   I+GQ++A   +A A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERIVGQEEAISTMAKAVR-RAR-----AGLKDPRRPIGSFIFLGPTGVGKTLLARALA 558

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGRNV 99
                     IK+++++F E   V R V
Sbjct: 559 EFMFGSEDALIKIDMSEFMERHNVSRLV 586


>gi|182626453|ref|ZP_02954205.1| clpB protein [Clostridium perfringens D str. JGS1721]
 gi|177908250|gb|EDT70808.1| clpB protein [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 9/58 (15%)

Query: 20  IIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75
           +IGQ +A  AVA A +R R       A L+DE  P  + + +GPTGVGKT +++ LAR
Sbjct: 577 VIGQDEATTAVANAVIRAR-------AGLKDERKPIGSFIFLGPTGVGKTELAKTLAR 627


>gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 808

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 19/147 (12%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDV 109
           PK +LL GP G GKT I++ +A    A FI +   +     Y G + E   ++  +  + 
Sbjct: 218 PKGVLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEIMS-KYYGESEERLREVFEEAQEN 276

Query: 110 AINIVRESRRDEV---REQASINAEERILDALVG-----KT-------ATSNTREVFRKK 154
           A +IV     D +   RE+     E RI+  L+      KT       A +N  ++    
Sbjct: 277 APSIVFIDEIDSIAPKREEVKGEVERRIVAQLLALMDGLKTRGQVVVIAATNLPDMIDPA 336

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDI 181
           LR G   D+EI+I + DT      F I
Sbjct: 337 LRRGGRFDREIEIGIPDTKGRQQIFQI 363



 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           G +D K  +A A+    +  ++ A L  E  P+ ILL GP G GKT +++ +A  + + F
Sbjct: 460 GLEDVKGELAEAVEWPLKYPEIFASLETE-PPRGILLFGPPGTGKTLLAKAVANESESNF 518

Query: 82  IKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114
           I V+  +     +G   R V Q+ R     A +I+
Sbjct: 519 ISVKGPELLSKWVGESERGVRQVFRKARQAAPSII 553


>gi|28198573|ref|NP_778887.1| ATP-dependent Clp protease subunit [Xylella fastidiosa Temecula1]
 gi|182681254|ref|YP_001829414.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xylella
           fastidiosa M23]
 gi|28056657|gb|AAO28536.1| ATP-dependent Clp protease subunit [Xylella fastidiosa Temecula1]
 gi|182631364|gb|ACB92140.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xylella
           fastidiosa M23]
 gi|307579704|gb|ADN63673.1| ATP-dependent Clp protease subunit [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 758

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           N LL GPTGVGKT ++++LA   G   ++ +++++ E   V R
Sbjct: 491 NFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSR 533


>gi|73748009|ref|YP_307248.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. CBDB1]
 gi|73659725|emb|CAI82332.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. CBDB1]
          Length = 824

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   ++ A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 508 LHERIIGQEEAIVTISKAVR-RAR-----AGLKDPRHPIGNFVFLGPTGVGKTELARALA 561

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 562 QFMFGSEDSLVRLDMSEFMEKFAVSRLV 589


>gi|21910699|ref|NP_664967.1| putative ATP-dependent protease [Streptococcus pyogenes MGAS315]
 gi|28895611|ref|NP_801961.1| ATP-dependent protease [Streptococcus pyogenes SSI-1]
 gi|21904902|gb|AAM79770.1| putative ATP-dependent protease [Streptococcus pyogenes MGAS315]
 gi|28810860|dbj|BAC63794.1| putative ATP-dependent protease [Streptococcus pyogenes SSI-1]
          Length = 760

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|67465840|ref|XP_649078.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56465447|gb|EAL43703.1| 26S protease regulatory subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  T+  +  Y+G    +++R+L  +A
Sbjct: 175 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQ-KYIGEG-SRMVRELFVMA 230


>gi|312127443|ref|YP_003992317.1| ATP-dependent chaperone clpb [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777462|gb|ADQ06948.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor hydrothermalis
           108]
          Length = 864

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 16/99 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGP 61
           + R+ + ELD    R ++GQ +A  AV  A +R R       A ++D   P    L +GP
Sbjct: 559 TERQKILELDKILHRRVVGQDEAIEAVCNAIMRAR-------AGIKDPRKPIGTFLFLGP 611

Query: 62  TGVGKTAISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           TGVGKT ++R LA     + +  I++++T++ E   V R
Sbjct: 612 TGVGKTELARALAEALFDSESNMIRIDMTEYMEKHSVSR 650


>gi|241955106|ref|XP_002420274.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis
           CD36]
 gi|223643615|emb|CAX42498.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis
           CD36]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 210 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 265


>gi|254362598|ref|ZP_04978693.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
 gi|153094206|gb|EDN75089.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
          Length = 855

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +S+ LA  L 
Sbjct: 569 VIGQNEAVDAVANAIR-RSR-----AGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLF 622

Query: 78  GAP--FIKVEVTKFTEIGYVGRNV 99
             P   +++++++F E   V R V
Sbjct: 623 DDPDAMVRIDMSEFMEKHSVSRLV 646


>gi|114705352|ref|ZP_01438260.1| shikimate kinase [Fulvimarina pelagi HTCC2506]
 gi|114540137|gb|EAU43257.1| shikimate kinase [Fulvimarina pelagi HTCC2506]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 45 ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
          +D+R++L  +++ LVG  G GKT + RRLA L G PF
Sbjct: 11 SDVREKLQDRSVALVGLMGAGKTTVGRRLAALLGLPF 47


>gi|15838044|ref|NP_298732.1| ATP-dependent Clp protease subunit [Xylella fastidiosa 9a5c]
 gi|9106461|gb|AAF84252.1|AE003974_7 ATP-dependent Clp protease subunit [Xylella fastidiosa 9a5c]
          Length = 758

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           N LL GPTGVGKT ++++LA   G   ++ +++++ E   V R
Sbjct: 491 NFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSR 533


>gi|23098336|ref|NP_691802.1| ATP-dependent Clp proteinase [Oceanobacillus iheyensis HTE831]
 gi|22776562|dbj|BAC12837.1| ATP-dependent Clp proteinase (ClpE) [Oceanobacillus iheyensis
           HTE831]
          Length = 712

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +  +L + +IGQ +A + VA A+R R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 415 KNLSDQLSQKVIGQNEAVQKVAKAIR-RSR-----AGLKAKQRPIGSFLFVGPTGVGKTE 468

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +++ LA  L G+    ++++++++ E            GYVG 
Sbjct: 469 LTKVLAEELFGSRDSMVRLDMSEYMEKHAVSKIIGSPPGYVGH 511


>gi|321451206|gb|EFX62935.1| hypothetical protein DAPPUDRAFT_67539 [Daphnia pulex]
 gi|321454105|gb|EFX65290.1| hypothetical protein DAPPUDRAFT_65602 [Daphnia pulex]
          Length = 113

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+  VG      +RDL
Sbjct: 2   VPKGALLLGPPGCGKTLLAKAVATEADVPFLSMNGSEFIEV--VGGLEAARVRDL 54


>gi|322381155|ref|ZP_08055158.1| hypothetical protein PL1_0067 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154731|gb|EFX47002.1| hypothetical protein PL1_0067 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 816

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVSRAIR-RAR-----AGLKDPKRPMGSFIFLGPTGVGKTELARALA 559


>gi|304311207|ref|YP_003810805.1| ATP-dependent clp protease, ATP-binding subunit [gamma
           proteobacterium HdN1]
 gi|301796940|emb|CBL45153.1| ATP-dependent clp protease, ATP-binding subunit [gamma
           proteobacterium HdN1]
          Length = 763

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA+  G   I+ +++++ E   V R
Sbjct: 502 SFLFAGPTGVGKTEVTRQLAKTMGMELIRFDMSEYMERHTVSR 544


>gi|296422801|ref|XP_002840947.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637174|emb|CAZ85138.1| unnamed protein product [Tuber melanosporum]
          Length = 270

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 46  PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 101


>gi|261250366|ref|ZP_05942942.1| ClpB protein [Vibrio orientalis CIP 102891]
 gi|260939482|gb|EEX95468.1| ClpB protein [Vibrio orientalis CIP 102891]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQTEAVEVVANAIR-RSR-----AGLSDPNQPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|238881210|gb|EEQ44848.1| 26S protease regulatory subunit 6A [Candida albicans WO-1]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 210 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 265


>gi|238896038|ref|YP_002920774.1| protein disaggregation chaperone [Klebsiella pneumoniae NTUH-K2044]
 gi|238548356|dbj|BAH64707.1| ATP-dependent protease [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQDEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|190348879|gb|EDK41426.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 221 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 276


>gi|159026800|emb|CAO86645.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 692

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 391 ELHESVIGQEEAVTAVAEAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTELAKAL 444

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           AR         ++++++++ E   V R
Sbjct: 445 ARNLFDTEEALVRIDMSEYMEKHSVSR 471


>gi|148557403|ref|YP_001264985.1| membrane protease FtsH catalytic subunit [Sphingomonas wittichii
           RW1]
 gi|148502593|gb|ABQ70847.1| membrane protease FtsH catalytic subunit [Sphingomonas wittichii
           RW1]
          Length = 652

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 197 IPKGALLVGSPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 253


>gi|134297225|ref|YP_001120960.1| ATPase central domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140382|gb|ABO56125.1| AAA ATPase, central domain protein [Burkholderia vietnamiensis G4]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DMRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|242781752|ref|XP_002479864.1| proteasome regulatory particle subunit Rpt3, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218720011|gb|EED19430.1| proteasome regulatory particle subunit Rpt3, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +LL GP G GKT + + +A    A FI
Sbjct: 174 KQEIREAVELPLTHTDLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSTTASFI 228

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 229 RVVGSEFVQ-KYLGEG-PRMVRDVFRMA 254


>gi|260824930|ref|XP_002607420.1| hypothetical protein BRAFLDRAFT_276636 [Branchiostoma floridae]
 gi|229292767|gb|EEN63430.1| hypothetical protein BRAFLDRAFT_276636 [Branchiostoma floridae]
          Length = 643

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 184 IPKGAILSGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFSMA 240


>gi|206578585|ref|YP_002237070.1| ATP-dependent chaperone ClpB [Klebsiella pneumoniae 342]
 gi|288934032|ref|YP_003438091.1| ATP-dependent chaperone ClpB [Klebsiella variicola At-22]
 gi|290510908|ref|ZP_06550277.1| ATP-dependent chaperone ClpB [Klebsiella sp. 1_1_55]
 gi|206567643|gb|ACI09419.1| ATP-dependent chaperone ClpB [Klebsiella pneumoniae 342]
 gi|288888761|gb|ADC57079.1| ATP-dependent chaperone ClpB [Klebsiella variicola At-22]
 gi|289775901|gb|EFD83900.1| ATP-dependent chaperone ClpB [Klebsiella sp. 1_1_55]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQDEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|94994743|ref|YP_602841.1| ATP-dependent endopeptidase clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS10750]
 gi|94548251|gb|ABF38297.1| ATP-dependent endopeptidase clp ATP-binding subunit clpE
           [Streptococcus pyogenes MGAS10750]
          Length = 760

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|50914607|ref|YP_060579.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS10394]
 gi|50903681|gb|AAT87396.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 760

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|189501345|ref|YP_001960815.1| ATPase AAA-2 domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496786|gb|ACE05334.1| ATPase AAA-2 domain protein [Chlorobium phaeobacteroides BS1]
          Length = 440

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ  A +AV+ A++ R R     A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IDQELHKRVIGQDKAVQAVSEAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDAMIRIDMSEYMESHSVSRLV 220


>gi|302348850|ref|YP_003816488.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15]
 gi|302329262|gb|ADL19457.1| MoxR-like ATPase [Acidilobus saccharovorans 345-15]
          Length = 383

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 21/91 (23%)

Query: 1  MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
          MKL   F     ++EL+   +G+ +    + +AL                +  ++++L+G
Sbjct: 11 MKLASQF-----LTELEAPFVGRHEESLVITLAL----------------MTGEHVVLIG 49

Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
            G  K+AI+RR A L  A F K  +TKFTE
Sbjct: 50 EPGTAKSAIARRSADLLNARFFKYLLTKFTE 80


>gi|302308836|ref|NP_985941.2| AFR394Wp [Ashbya gossypii ATCC 10895]
 gi|299790818|gb|AAS53765.2| AFR394Wp [Ashbya gossypii ATCC 10895]
          Length = 467

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L      QQ+  D      P+ +LL GP G GKT + + +A    A FI
Sbjct: 220 KQEIREAVELPLVQADLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSTNAAFI 274

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F    Y+G    +++RD+  +A
Sbjct: 275 RVNGSEFVH-KYLGEG-PRMVRDVFRLA 300


>gi|294788087|ref|ZP_06753331.1| ATP-dependent chaperone protein ClpB [Simonsiella muelleri ATCC
           29453]
 gi|294484380|gb|EFG32063.1| ATP-dependent chaperone protein ClpB [Simonsiella muelleri ATCC
           29453]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A RAVA A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 567 LHKRVIGQDEAVRAVADAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKTLA 620

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   + R
Sbjct: 621 SFLFDSEDHLIRIDMSEYMEKHSIAR 646


>gi|268607891|ref|ZP_06141622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruminococcus
           flavefaciens FD-1]
          Length = 742

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 18/93 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           + + I GQ +A   V  A++         A L +E  P  ++L VGPTGVGKT I++ LA
Sbjct: 447 MKKRIFGQDEAIAQVVNAVKFS------KAGLLEENKPLASLLFVGPTGVGKTEIAKSLA 500

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVG 96
              G   I+ +++++ E            GYVG
Sbjct: 501 EELGVKLIRFDMSEYGEKHAVAKLIGSPAGYVG 533


>gi|262043836|ref|ZP_06016926.1| chaperone ClpB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038806|gb|EEW39987.1| chaperone ClpB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQDEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKT 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|303315187|ref|XP_003067601.1| hypothetical protein CPC735_065560 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107271|gb|EER25456.1| hypothetical protein CPC735_065560 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 4903

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  S + + S+  R  +G+  A  +   +LR     +Q+ A L+   M + +LLVG TG+
Sbjct: 591 FCQSIKVLRSQKSRQSLGKGSAFASTKASLRTM---EQVAAALQ---MSEPVLLVGETGI 644

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVD 108
           GKTA+ +RLA L       V +++ +E      GY   N+  I   LVD
Sbjct: 645 GKTAVIQRLATLLNQRLTVVNLSQQSETTDLLGGYKPINLRSIAVPLVD 693


>gi|255729088|ref|XP_002549469.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404]
 gi|240132538|gb|EER32095.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 208 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 263


>gi|288574596|ref|ZP_06392953.1| ATPase AAA-2 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570337|gb|EFC91894.1| ATPase AAA-2 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 824

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           E+ R ++GQ+ A  AV+ A+R R R     + L+D   P  + L +GPTGVGKT ++R L
Sbjct: 509 EIHRRLVGQESAVSAVSKAIR-RAR-----SGLKDPKRPIGSFLFLGPTGVGKTEMARSL 562

Query: 74  A 74
           A
Sbjct: 563 A 563


>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
 gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A   G  F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 167 PKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVD-KYIGESA-RIIREMFSYA 222


>gi|195952893|ref|YP_002121183.1| ATP-dependent metalloprotease FtsH [Hydrogenobaculum sp. Y04AAS1]
 gi|310943133|sp|B4U7U4|FTSH_HYDS0 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|195932505|gb|ACG57205.1| ATP-dependent metalloprotease FtsH [Hydrogenobaculum sp. Y04AAS1]
          Length = 636

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK IL  G  GVGKT +++ LA  A  PFI V  + F E+ +VG    + +RD  + A
Sbjct: 196 PKGILFYGEPGVGKTLLAKALAGEAHVPFISVSGSDFVEM-FVGVGAAR-MRDTFETA 251


>gi|193596505|ref|XP_001945593.1| PREDICTED: 26S protease regulatory subunit 6B-like [Acyrthosiphon
           pisum]
          Length = 414

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 170 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 224

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 225 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 250


>gi|190347891|gb|EDK40247.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 206 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 261


>gi|160331365|ref|XP_001712390.1| prsS7 [Hemiselmis andersenii]
 gi|159765838|gb|ABW98065.1| prsS7 [Hemiselmis andersenii]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ++L GP G GKT ++R +A    + FIKV  ++  +  Y+G    +++R+L   A
Sbjct: 180 PKGVMLYGPPGTGKTLVARAVANRTDSCFIKVICSELVQ-KYIGEGA-RLVRELFQFA 235


>gi|153003502|ref|YP_001377827.1| ATPase [Anaeromyxobacter sp. Fw109-5]
 gi|152027075|gb|ABS24843.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 890

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L++ ++GQ++A RAV+ A+R R R       L+D   P    L +GPTGVGKT  
Sbjct: 563 EMERALEKRVVGQEEALRAVSEAVR-RAR-----TGLKDPSRPIGTFLFLGPTGVGKTET 616

Query: 70  SRRLA 74
           +R LA
Sbjct: 617 ARALA 621


>gi|37525237|ref|NP_928581.1| protein disaggregation chaperone [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|54035796|sp|Q7N788|CLPB_PHOLL RecName: Full=Chaperone protein ClpB
 gi|36784664|emb|CAE13564.1| heat shock protein F84.1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ +A  A++ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHKRVIGQDEAVNAISNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFLFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|30063993|ref|NP_838164.1| protein disaggregation chaperone [Shigella flexneri 2a str. 2457T]
 gi|110806537|ref|YP_690057.1| protein disaggregation chaperone [Shigella flexneri 5 str. 8401]
 gi|54035804|sp|Q7UBW5|CLPB_SHIFL RecName: Full=Chaperone protein ClpB
 gi|30042249|gb|AAP17974.1| heat shock protein [Shigella flexneri 2a str. 2457T]
 gi|110616085|gb|ABF04752.1| heat shock protein [Shigella flexneri 5 str. 8401]
 gi|281602004|gb|ADA74988.1| Chaperone protein clpB [Shigella flexneri 2002017]
 gi|313648272|gb|EFS12716.1| ATP-dependent chaperone ClpB [Shigella flexneri 2a str. 2457T]
 gi|332753866|gb|EGJ84243.1| ATP-dependent chaperone ClpB [Shigella flexneri 4343-70]
 gi|332755659|gb|EGJ86022.1| ATP-dependent chaperone ClpB [Shigella flexneri 2747-71]
 gi|332997821|gb|EGK17431.1| ATP-dependent chaperone ClpB [Shigella flexneri K-218]
 gi|333015833|gb|EGK35169.1| ATP-dependent chaperone ClpB [Shigella flexneri K-304]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|332999364|gb|EGK18949.1| ATP-dependent chaperone ClpB [Shigella flexneri VA-6]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|332375430|gb|AEE62856.1| unknown [Dendroctonus ponderosae]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 166 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTATFI 220

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 221 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246


>gi|323978455|gb|EGB73539.1| ATP-dependent chaperone ClpB [Escherichia coli TW10509]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|320589257|gb|EFX01719.1| proteasome regulatory particle subunit [Grosmannia clavigera
           kw1407]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 215 PKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 270


>gi|320035608|gb|EFW17549.1| hypothetical protein CPSG_05992 [Coccidioides posadasii str.
           Silveira]
          Length = 4865

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  S + + S+  R  +G+  A  +   +LR     +Q+ A L+   M + +LLVG TG+
Sbjct: 553 FCQSIKVLRSQKSRQSLGKGSAFASTKASLRTM---EQVAAALQ---MSEPVLLVGETGI 606

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVD 108
           GKTA+ +RLA L       V +++ +E      GY   N+  I   LVD
Sbjct: 607 GKTAVIQRLATLLNQRLTVVNLSQQSETTDLLGGYKPINLRSIAVPLVD 655


>gi|300825131|ref|ZP_07105224.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 119-7]
 gi|300522403|gb|EFK43472.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 119-7]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|301094536|ref|XP_002896373.1| 26S protease regulatory subunit 6B [Phytophthora infestans T30-4]
 gi|262109556|gb|EEY67608.1| 26S protease regulatory subunit 6B [Phytophthora infestans T30-4]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 159 IQKQEVREAVELPLTHFDLYKQIGVD-----PPRGVLMYGPPGTGKTMLAKAVANATTAA 213

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI V  ++F +  Y+G    +++RD+  +A
Sbjct: 214 FISVVGSEFVQ-KYLGEG-PRMVRDVFRLA 241


>gi|311113965|ref|YP_003985186.1| chaperone protein ClpB [Gardnerella vaginalis ATCC 14019]
 gi|310945459|gb|ADP38163.1| chaperone protein ClpB [Gardnerella vaginalis ATCC 14019]
          Length = 868

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A RA+A A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 575 ELSKRVVGQSEAIRAIADAVR-RSR-----AGIADPNRPTGSFLFLGPTGVGKTELAKAL 628

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          ++++++++ E   V R
Sbjct: 629 ADFLFDDERAMVRIDMSEYMEKASVSR 655


>gi|212535938|ref|XP_002148125.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070524|gb|EEA24614.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  A   FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHADCKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|194014936|ref|ZP_03053553.1| negative regulator of genetic competence ClpC/mecB [Bacillus
           pumilus ATCC 7061]
 gi|194013962|gb|EDW23527.1| negative regulator of genetic competence ClpC/mecB [Bacillus
           pumilus ATCC 7061]
          Length = 661

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           +EI   L   +IGQ+ A   VA A++ R R     A L+ +  P  + L VGPTGVGKT 
Sbjct: 362 KEIDVRLKARVIGQEHAVEKVAKAVK-RSR-----AGLKSKHRPTGSFLFVGPTGVGKTE 415

Query: 69  ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGRN 98
           +S+ LA  L G+    I+++++++ E            GYVG +
Sbjct: 416 LSKTLAEELFGSRDAIIRLDMSEYMEKHSVSKLIGSPPGYVGHD 459


>gi|163797887|ref|ZP_02191831.1| ATPase with chaperone activity, ATP-binding subunit [alpha
           proteobacterium BAL199]
 gi|159176849|gb|EDP61417.1| ATPase with chaperone activity, ATP-binding subunit [alpha
           proteobacterium BAL199]
          Length = 783

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   + GQ  A  ++A A++         A LR+   P  + L  GPTGVGKT ++R+L
Sbjct: 461 DLKTVVFGQDSAIASLASAIKLAR------AGLRESEKPIGSYLFSGPTGVGKTEVARQL 514

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           A   G   I+ +++++ E            GYVG +   ++ D +D
Sbjct: 515 ALTLGVELIRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDQID 560


>gi|158290275|ref|XP_311871.3| AGAP003008-PA [Anopheles gambiae str. PEST]
 gi|157017816|gb|EAA44836.3| AGAP003008-PA [Anopheles gambiae str. PEST]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 136 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 190

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 191 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 216


>gi|149068723|gb|EDM18275.1| rCG39494, isoform CRA_b [Rattus norvegicus]
 gi|149068724|gb|EDM18276.1| rCG39494, isoform CRA_b [Rattus norvegicus]
          Length = 506

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 142 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 192

Query: 73  LARL----AGAPFIKVEVTKFTE 91
            A+     A   FI++++++F E
Sbjct: 193 TAKYMHKDAKKGFIRLDMSEFQE 215


>gi|147365|gb|AAA24422.1| ATP-dependent protease binding subunit [Escherichia coli]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|15832709|ref|NP_311482.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130513|ref|NP_417083.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313151|ref|YP_311570.1| protein disaggregation chaperone [Shigella sonnei Ss046]
 gi|82545045|ref|YP_408992.1| protein disaggregation chaperone [Shigella boydii Sb227]
 gi|89109394|ref|AP_003174.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. W3110]
 gi|110642755|ref|YP_670485.1| protein disaggregation chaperone [Escherichia coli 536]
 gi|157158232|ref|YP_001463913.1| protein disaggregation chaperone [Escherichia coli E24377A]
 gi|157162068|ref|YP_001459386.1| protein disaggregation chaperone [Escherichia coli HS]
 gi|168752067|ref|ZP_02777089.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4113]
 gi|168758662|ref|ZP_02783669.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4401]
 gi|168762385|ref|ZP_02787392.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4501]
 gi|168771698|ref|ZP_02796705.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4486]
 gi|168773480|ref|ZP_02798487.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4196]
 gi|168778570|ref|ZP_02803577.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4076]
 gi|168789495|ref|ZP_02814502.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC869]
 gi|168801710|ref|ZP_02826717.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC508]
 gi|170019129|ref|YP_001724083.1| protein disaggregation chaperone [Escherichia coli ATCC 8739]
 gi|170082197|ref|YP_001731517.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683980|ref|YP_001744777.1| protein disaggregation chaperone [Escherichia coli SMS-3-5]
 gi|188492624|ref|ZP_02999894.1| ATP-dependent chaperone protein ClpB [Escherichia coli 53638]
 gi|191169051|ref|ZP_03030814.1| ATP-dependent chaperone protein ClpB [Escherichia coli B7A]
 gi|191174569|ref|ZP_03036064.1| ATP-dependent chaperone protein ClpB [Escherichia coli F11]
 gi|193064051|ref|ZP_03045136.1| ATP-dependent chaperone protein ClpB [Escherichia coli E22]
 gi|194430164|ref|ZP_03062665.1| ATP-dependent chaperone protein ClpB [Escherichia coli B171]
 gi|194439334|ref|ZP_03071412.1| ATP-dependent chaperone protein ClpB [Escherichia coli 101-1]
 gi|195940187|ref|ZP_03085569.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805997|ref|ZP_03248334.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4206]
 gi|208813052|ref|ZP_03254381.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4045]
 gi|208819305|ref|ZP_03259625.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4042]
 gi|209397795|ref|YP_002272065.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4115]
 gi|209920069|ref|YP_002294153.1| protein disaggregation chaperone [Escherichia coli SE11]
 gi|215487931|ref|YP_002330362.1| protein disaggregation chaperone [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326744|ref|ZP_03442827.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555172|ref|YP_002388085.1| protein disaggregation chaperone [Escherichia coli IAI1]
 gi|218690711|ref|YP_002398923.1| protein disaggregation chaperone [Escherichia coli ED1a]
 gi|218696217|ref|YP_002403884.1| protein disaggregation chaperone [Escherichia coli 55989]
 gi|218701104|ref|YP_002408733.1| protein disaggregation chaperone [Escherichia coli IAI39]
 gi|218706094|ref|YP_002413613.1| protein disaggregation chaperone [Escherichia coli UMN026]
 gi|238901753|ref|YP_002927549.1| protein disaggregation chaperone [Escherichia coli BW2952]
 gi|253772512|ref|YP_003035343.1| protein disaggregation chaperone [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162563|ref|YP_003045671.1| protein disaggregation chaperone [Escherichia coli B str. REL606]
 gi|254794540|ref|YP_003079377.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019587|ref|ZP_05433452.1| protein disaggregation chaperone [Shigella sp. D9]
 gi|256024879|ref|ZP_05438744.1| protein disaggregation chaperone [Escherichia sp. 4_1_40B]
 gi|260845274|ref|YP_003223052.1| protein disaggregation chaperone ClpB [Escherichia coli O103:H2
           str. 12009]
 gi|260856682|ref|YP_003230573.1| protein disaggregation chaperone ClpB [Escherichia coli O26:H11
           str. 11368]
 gi|260869274|ref|YP_003235676.1| protein disaggregation chaperone ClpB [Escherichia coli O111:H-
           str. 11128]
 gi|261227477|ref|ZP_05941758.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255671|ref|ZP_05948204.1| protein disaggregation chaperone ClpB [Escherichia coli O157:H7
           str. FRIK966]
 gi|297516260|ref|ZP_06934646.1| protein disaggregation chaperone [Escherichia coli OP50]
 gi|301024190|ref|ZP_07187897.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 196-1]
 gi|306812488|ref|ZP_07446686.1| protein disaggregation chaperone [Escherichia coli NC101]
 gi|307139313|ref|ZP_07498669.1| protein disaggregation chaperone [Escherichia coli H736]
 gi|307315094|ref|ZP_07594678.1| ATP-dependent chaperone ClpB [Escherichia coli W]
 gi|312965507|ref|ZP_07779739.1| ATP-dependent chaperone ClpB [Escherichia coli 2362-75]
 gi|331664159|ref|ZP_08365068.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA143]
 gi|331669344|ref|ZP_08370190.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA271]
 gi|331674036|ref|ZP_08374798.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA280]
 gi|54036848|sp|P63284|CLPB_ECOLI RecName: Full=Chaperone protein ClpB; AltName: Full=Heat shock
           protein F84.1
 gi|54036849|sp|P63285|CLPB_ECO57 RecName: Full=Chaperone protein ClpB
 gi|54036850|sp|P63286|CLPB_ECOL6 RecName: Full=Chaperone protein ClpB
 gi|1788943|gb|AAC75641.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799995|dbj|BAA16476.1| protein disaggregation chaperone [Escherichia coli str. K12 substr.
           W3110]
 gi|13362926|dbj|BAB36878.1| heat shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856628|gb|AAZ89335.1| heat shock protein [Shigella sonnei Ss046]
 gi|81246456|gb|ABB67164.1| heat shock protein [Shigella boydii Sb227]
 gi|110344347|gb|ABG70584.1| ClpB protein [Escherichia coli 536]
 gi|157067748|gb|ABV07003.1| ATP-dependent chaperone protein ClpB [Escherichia coli HS]
 gi|157080262|gb|ABV19970.1| ATP-dependent chaperone protein ClpB [Escherichia coli E24377A]
 gi|169754057|gb|ACA76756.1| ATP-dependent chaperone ClpB [Escherichia coli ATCC 8739]
 gi|169890032|gb|ACB03739.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521698|gb|ACB19876.1| ATP-dependent chaperone protein ClpB [Escherichia coli SMS-3-5]
 gi|187770676|gb|EDU34520.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4196]
 gi|188014008|gb|EDU52130.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4113]
 gi|188487823|gb|EDU62926.1| ATP-dependent chaperone protein ClpB [Escherichia coli 53638]
 gi|189003333|gb|EDU72319.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4076]
 gi|189354548|gb|EDU72967.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4401]
 gi|189359601|gb|EDU78020.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4486]
 gi|189367288|gb|EDU85704.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4501]
 gi|189370894|gb|EDU89310.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC869]
 gi|189376181|gb|EDU94597.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC508]
 gi|190900892|gb|EDV60678.1| ATP-dependent chaperone protein ClpB [Escherichia coli B7A]
 gi|190905142|gb|EDV64786.1| ATP-dependent chaperone protein ClpB [Escherichia coli F11]
 gi|192929286|gb|EDV82895.1| ATP-dependent chaperone protein ClpB [Escherichia coli E22]
 gi|194411789|gb|EDX28110.1| ATP-dependent chaperone protein ClpB [Escherichia coli B171]
 gi|194421696|gb|EDX37705.1| ATP-dependent chaperone protein ClpB [Escherichia coli 101-1]
 gi|208725798|gb|EDZ75399.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4206]
 gi|208734329|gb|EDZ83016.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4045]
 gi|208739428|gb|EDZ87110.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4042]
 gi|209159195|gb|ACI36628.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4115]
 gi|209913328|dbj|BAG78402.1| ATP-dependent protease [Escherichia coli SE11]
 gi|215266003|emb|CAS10414.1| protein disaggregation chaperone [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319111|gb|EEC27536.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352949|emb|CAU98748.1| protein disaggregation chaperone [Escherichia coli 55989]
 gi|218361940|emb|CAQ99542.1| protein disaggregation chaperone [Escherichia coli IAI1]
 gi|218371090|emb|CAR18919.1| protein disaggregation chaperone [Escherichia coli IAI39]
 gi|218428275|emb|CAR09200.2| protein disaggregation chaperone [Escherichia coli ED1a]
 gi|218433191|emb|CAR14090.1| protein disaggregation chaperone [Escherichia coli UMN026]
 gi|238863301|gb|ACR65299.1| protein disaggregation chaperone [Escherichia coli BW2952]
 gi|242378188|emb|CAQ32963.1| ClpB chaperone [Escherichia coli BL21(DE3)]
 gi|253323556|gb|ACT28158.1| ATP-dependent chaperone ClpB [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974464|gb|ACT40135.1| protein disaggregation chaperone [Escherichia coli B str. REL606]
 gi|253978631|gb|ACT44301.1| protein disaggregation chaperone [Escherichia coli BL21(DE3)]
 gi|254593940|gb|ACT73301.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755331|dbj|BAI26833.1| protein disaggregation chaperone ClpB [Escherichia coli O26:H11
           str. 11368]
 gi|257760421|dbj|BAI31918.1| protein disaggregation chaperone ClpB [Escherichia coli O103:H2
           str. 12009]
 gi|257765630|dbj|BAI37125.1| protein disaggregation chaperone ClpB [Escherichia coli O111:H-
           str. 11128]
 gi|260448332|gb|ACX38754.1| ATP-dependent chaperone ClpB [Escherichia coli DH1]
 gi|281179640|dbj|BAI55970.1| ATP-dependent protease [Escherichia coli SE15]
 gi|284922540|emb|CBG35627.1| chaperone (heat-shock protein F84.1) [Escherichia coli 042]
 gi|299880532|gb|EFI88743.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 196-1]
 gi|305854526|gb|EFM54964.1| protein disaggregation chaperone [Escherichia coli NC101]
 gi|306905523|gb|EFN36057.1| ATP-dependent chaperone ClpB [Escherichia coli W]
 gi|307554607|gb|ADN47382.1| ATP-dependent chaperone protein ClpB [Escherichia coli ABU 83972]
 gi|309702974|emb|CBJ02305.1| chaperone (heat-shock protein F84.1) [Escherichia coli ETEC H10407]
 gi|312289927|gb|EFR17815.1| ATP-dependent chaperone ClpB [Escherichia coli 2362-75]
 gi|315061907|gb|ADT76234.1| protein disaggregation chaperone [Escherichia coli W]
 gi|315137212|dbj|BAJ44371.1| heat shock protein [Escherichia coli DH1]
 gi|315615333|gb|EFU95967.1| ATP-dependent chaperone ClpB [Escherichia coli 3431]
 gi|320177085|gb|EFW52102.1| ClpB protein [Shigella dysenteriae CDC 74-1112]
 gi|320182491|gb|EFW57385.1| ClpB protein [Shigella boydii ATCC 9905]
 gi|320185012|gb|EFW59794.1| ClpB protein [Shigella flexneri CDC 796-83]
 gi|320188931|gb|EFW63590.1| ClpB protein [Escherichia coli O157:H7 str. EC1212]
 gi|320194759|gb|EFW69388.1| ClpB protein [Escherichia coli WV_060327]
 gi|320198369|gb|EFW72971.1| ClpB protein [Escherichia coli EC4100B]
 gi|320640776|gb|EFX10274.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           G5101]
 gi|320646121|gb|EFX15066.1| protein disaggregation chaperone [Escherichia coli O157:H- str.
           493-89]
 gi|320651418|gb|EFX19819.1| protein disaggregation chaperone [Escherichia coli O157:H- str. H
           2687]
 gi|320657023|gb|EFX24846.1| protein disaggregation chaperone [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662687|gb|EFX30031.1| protein disaggregation chaperone [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667504|gb|EFX34428.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156248|gb|EFZ42407.1| ATP-dependent chaperone ClpB [Escherichia coli EPECa14]
 gi|323177280|gb|EFZ62868.1| ATP-dependent chaperone ClpB [Escherichia coli 1180]
 gi|323184531|gb|EFZ69905.1| ATP-dependent chaperone ClpB [Escherichia coli 1357]
 gi|323377512|gb|ADX49780.1| ATP-dependent chaperone ClpB [Escherichia coli KO11]
 gi|323935612|gb|EGB31932.1| ATP-dependent chaperone ClpB [Escherichia coli E1520]
 gi|323941388|gb|EGB37572.1| ATP-dependent chaperone ClpB [Escherichia coli E482]
 gi|323946279|gb|EGB42312.1| ATP-dependent chaperone ClpB [Escherichia coli H120]
 gi|323960548|gb|EGB56177.1| ATP-dependent chaperone ClpB [Escherichia coli H489]
 gi|323963902|gb|EGB59395.1| ATP-dependent chaperone ClpB [Escherichia coli M863]
 gi|324120051|gb|EGC13927.1| ATP-dependent chaperone ClpB [Escherichia coli E1167]
 gi|325496334|gb|EGC94193.1| protein disaggregation chaperone [Escherichia fergusonii ECD227]
 gi|326344348|gb|EGD68106.1| ClpB protein [Escherichia coli O157:H7 str. 1125]
 gi|326347717|gb|EGD71434.1| ClpB protein [Escherichia coli O157:H7 str. 1044]
 gi|327252298|gb|EGE63970.1| ATP-dependent chaperone ClpB [Escherichia coli STEC_7v]
 gi|330912357|gb|EGH40867.1| ClpB protein [Escherichia coli AA86]
 gi|331058616|gb|EGI30594.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA143]
 gi|331063012|gb|EGI34925.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA271]
 gi|331068775|gb|EGI40168.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA280]
 gi|332344463|gb|AEE57797.1| ATP-dependent chaperone ClpB [Escherichia coli UMNK88]
 gi|333001158|gb|EGK20728.1| ATP-dependent chaperone ClpB [Shigella flexneri K-272]
 gi|333015796|gb|EGK35133.1| ATP-dependent chaperone ClpB [Shigella flexneri K-227]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|323161335|gb|EFZ47243.1| chaperone protein clpB domain protein [Escherichia coli E128010]
          Length = 353

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 60  QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 113

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 114 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 143


>gi|312371681|gb|EFR19805.1| hypothetical protein AND_21784 [Anopheles darlingi]
          Length = 4911

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           + K ILL GP GVGKT++   LAR  G  F+++ + + T++ 
Sbjct: 881 LEKAILLEGPPGVGKTSLVESLARTIGYDFVRINLCEHTDLA 922


>gi|170093437|ref|XP_001877940.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647799|gb|EDR12043.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1027

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 47  LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG--------YVGRN 98
           LR  +  K I LVGP GVGKT+I + ++R  G  F +  V   T++         YVG  
Sbjct: 509 LRGTVQGKIICLVGPPGVGKTSIGKSISRALGRQFFRFSVGGLTDVAEIKGHRRTYVGAL 568

Query: 99  VEQIIRDL 106
             +II+ L
Sbjct: 569 PGKIIQAL 576


>gi|153011782|ref|YP_001372995.1| ATPase [Ochrobactrum anthropi ATCC 49188]
 gi|151563670|gb|ABS17166.1| ATPase AAA-2 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 964

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ++A RAVA A+R         A LR+   P    L +GPTGVGKT +++ L
Sbjct: 616 KLHERVIGQEEAIRAVADAVR------LARAGLREGRGPTATFLFLGPTGVGKTELAKTL 669

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A +        I+++++++ E   V R V
Sbjct: 670 AEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|39972279|ref|XP_367530.1| hypothetical protein MGG_07441 [Magnaporthe oryzae 70-15]
 gi|145016627|gb|EDK01057.1| hypothetical protein MGG_07441 [Magnaporthe oryzae 70-15]
          Length = 1009

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 544 IPRGAILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGASR-VRDLFKEA 600


>gi|162605904|ref|XP_001713467.1| 26S proteasome SU [Guillardia theta]
 gi|13794399|gb|AAK39776.1|AF083031_133 26S proteasome SU [Guillardia theta]
          Length = 383

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I + +A      FI+   ++F +  Y+G    +++RDL  +A
Sbjct: 164 PKGVLLYGPPGTGKTLIVKAIAYRNSCAFIRTAGSEFVQ-KYLGEG-PKMVRDLFKLA 219


>gi|219669145|ref|YP_002459580.1| microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
 gi|219539405|gb|ACL21144.1| Microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
          Length = 493

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  AR   + ++ +  ++F E+ Y G   E+ +R L   A   
Sbjct: 99  KGILLSGPPGTGKTLLAKAAARYTDSVYLAISGSEFVEM-YAGVGAER-VRKLFKKA--- 153

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
            RES + E +++A I  +E  +D L  K  ++ +   + + L
Sbjct: 154 -RESAKKEKKDRAIIFIDE--MDILGAKRGSNVSHHEYDQTL 192


>gi|332088101|gb|EGI93226.1| ATP-dependent chaperone ClpB [Shigella boydii 5216-82]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|331654052|ref|ZP_08355052.1| ATP-dependent chaperone protein ClpB [Escherichia coli M718]
 gi|331047434|gb|EGI19511.1| ATP-dependent chaperone protein ClpB [Escherichia coli M718]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|324511079|gb|ADY44624.1| Katanin p60 ATPase-containing subunit [Ascaris suum]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           ++G  +AK+A+  AL +     +  +    +L P + +LL GP G GKT +SR +AR   
Sbjct: 97  LVGLAEAKQALREALLDPLTYPEWFSS--SDLKPWRCVLLYGPPGTGKTQLSRSIAREIN 154

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           + F +V  +    I       E++IR+L D A++  
Sbjct: 155 SRFYQVSSSDL--ISTWSGQSEKLIRELFDDALSFA 188


>gi|323308336|gb|EGA61582.1| Rpt1p [Saccharomyces cerevisiae FostersO]
          Length = 383

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 159 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 214


>gi|306823273|ref|ZP_07456649.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Bifidobacterium dentium ATCC 27679]
 gi|309801911|ref|ZP_07696026.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553905|gb|EFM41816.1| ATP-dependent Clp protease ATP-binding subunit ClpC
           [Bifidobacterium dentium ATCC 27679]
 gi|308221467|gb|EFO77764.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
           dentium JCVIHMP022]
          Length = 863

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTELAKT 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|289432006|ref|YP_003461879.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288945726|gb|ADC73423.1| ATPase AAA-2 domain protein [Dehalococcoides sp. GT]
          Length = 824

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   ++ A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 508 LHERIIGQEEAIVTISKAVR-RAR-----AGLKDPRHPIGNFVFLGPTGVGKTELARALA 561

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 562 QFMFGSEDSLVRLDMSEFMEKFAVSRLV 589


>gi|218559513|ref|YP_002392426.1| protein disaggregation chaperone [Escherichia coli S88]
 gi|218366282|emb|CAR04034.1| protein disaggregation chaperone [Escherichia coli S88]
 gi|294493689|gb|ADE92445.1| ATP-dependent chaperone protein ClpB [Escherichia coli IHE3034]
 gi|307625856|gb|ADN70160.1| protein disaggregation chaperone [Escherichia coli UM146]
 gi|323951207|gb|EGB47083.1| ATP-dependent chaperone ClpB [Escherichia coli H252]
 gi|323957039|gb|EGB52765.1| ATP-dependent chaperone ClpB [Escherichia coli H263]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|218547885|ref|YP_002381676.1| protein disaggregation chaperone [Escherichia fergusonii ATCC
           35469]
 gi|218355426|emb|CAQ88034.1| protein disaggregation chaperone [Escherichia fergusonii ATCC
           35469]
 gi|324111233|gb|EGC05215.1| ATP-dependent chaperone ClpB [Escherichia fergusonii B253]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|167585167|ref|ZP_02377555.1| AAA ATPase, central domain protein [Burkholderia ubonensis Bu]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTYFAKALAQLLGTSYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|119961353|ref|YP_945989.1| ATP-dependent Clp protease, ATP-binding subunit [Arthrobacter
           aurescens TC1]
 gi|119948212|gb|ABM07123.1| putative ATP-dependent Clp protease, ATP-binding subunit
           [Arthrobacter aurescens TC1]
          Length = 830

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R  ++  EL + ++GQ +A +A++ A+R R R     A L+D   P  + +
Sbjct: 496 FKLTEEESSRLLKMEDELHKRVVGQNEAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 549

Query: 58  LVGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA  L G     I +++++++E   V R
Sbjct: 550 FAGPTGVGKTELAKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|82778016|ref|YP_404365.1| protein disaggregation chaperone [Shigella dysenteriae Sd197]
 gi|309789454|ref|ZP_07684040.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 1617]
 gi|81242164|gb|ABB62874.1| heat shock protein [Shigella dysenteriae Sd197]
 gi|308922697|gb|EFP68218.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 1617]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|147668703|ref|YP_001213521.1| ATPase [Dehalococcoides sp. BAV1]
 gi|146269651|gb|ABQ16643.1| ATPase AAA-2 domain protein [Dehalococcoides sp. BAV1]
          Length = 824

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   IIGQ++A   ++ A+R R R     A L+D   P  N + +GPTGVGKT ++R LA
Sbjct: 508 LHERIIGQEEAIVTISKAVR-RAR-----AGLKDPRHPIGNFVFLGPTGVGKTELARALA 561

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +    +    +++++++F E   V R V
Sbjct: 562 QFMFGSEDSLVRLDMSEFMEKFAVSRLV 589


>gi|187733901|ref|YP_001881380.1| protein disaggregation chaperone [Shigella boydii CDC 3083-94]
 gi|187430893|gb|ACD10167.1| ATP-dependent chaperone protein ClpB [Shigella boydii CDC 3083-94]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|307207298|gb|EFN85048.1| Fidgetin-like protein 1 [Harpegnathos saltator]
          Length = 664

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT I + +A  + + F  +  +  T   ++G   E+++R L  VA
Sbjct: 418 PKGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS-KWIGEG-EKMVRALFAVA 473


>gi|291086328|ref|ZP_06355437.2| ATP-dependent chaperone protein ClpB [Citrobacter youngae ATCC
           29220]
 gi|291068913|gb|EFE07022.1| ATP-dependent chaperone protein ClpB [Citrobacter youngae ATCC
           29220]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|301122253|ref|XP_002908853.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
 gi|262099615|gb|EEY57667.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  ++IR++   A
Sbjct: 172 PKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVD-KYIGESA-RVIREMFGYA 227


>gi|240142554|ref|YP_002967067.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
 gi|240012501|gb|ACS43726.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
          Length = 964

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ++A RAVA A+R         A LR+   P    L +GPTGVGKT +++ L
Sbjct: 616 KLHERVIGQEEAIRAVADAVR------LARAGLREGRGPTATFLFLGPTGVGKTELAKTL 669

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A +        I+++++++ E   V R V
Sbjct: 670 AEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|224093035|ref|XP_002188362.1| PREDICTED: putative 26S protease regulatory subunit 7 [Taeniopygia
           guttata]
          Length = 569

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 345 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 400


>gi|224077716|ref|XP_002305376.1| predicted protein [Populus trichocarpa]
 gi|222848340|gb|EEE85887.1| predicted protein [Populus trichocarpa]
          Length = 967

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ  A +AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 642 ELHKRVVGQDPAVKAVAEAI------QRSRAGLSDPHRPIASFMFMGPTGVGKTELAKAL 695

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A          ++++++++ E   V R V
Sbjct: 696 ASYMFNTEEALVRIDMSEYMEKHSVSRLV 724


>gi|148684570|gb|EDL16517.1| ClpB caseinolytic peptidase B homolog (E. coli), isoform CRA_a [Mus
           musculus]
          Length = 506

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 142 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 192

Query: 73  LARL----AGAPFIKVEVTKFTE 91
            A+     A   FI++++++F E
Sbjct: 193 TAKYMHKDAKKGFIRLDMSEFQE 215


>gi|146413066|ref|XP_001482504.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 221 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 276


>gi|75812792|ref|YP_320409.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75705548|gb|ABA25220.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 873

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A RAVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 572 ELHKRVIGQDEAVRAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELAKAL 625

Query: 74  A 74
           A
Sbjct: 626 A 626


>gi|332765573|gb|EGJ95786.1| ATP-dependent chaperone ClpB [Shigella flexneri 2930-71]
          Length = 798

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 505 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 558

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 559 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|328872125|gb|EGG20492.1| hypothetical protein DFA_00353 [Dictyostelium fasciculatum]
          Length = 792

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           PK +LL GP G GKT I + +A    A F  +  +  T   ++G   E+++R L  VA+
Sbjct: 547 PKGMLLFGPPGTGKTMIGKAVASEVKATFFSISASTLTS-KWIGEG-EKMVRALFAVAL 603


>gi|312973164|ref|ZP_07787337.1| ATP-dependent chaperone ClpB [Escherichia coli 1827-70]
 gi|310333106|gb|EFQ00320.1| ATP-dependent chaperone ClpB [Escherichia coli 1827-70]
          Length = 798

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 505 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 558

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 559 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|226471216|emb|CAX70689.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 264


>gi|256374490|ref|YP_003098150.1| ATPase AAA [Actinosynnema mirum DSM 43827]
 gi|255918793|gb|ACU34304.1| ATPase AAA-2 domain protein [Actinosynnema mirum DSM 43827]
          Length = 852

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ +A +AV+ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 510 ELHKRIIGQVEAVKAVSQAIR-RTR-----AGLKDPKRPAGSFIFAGPSGVGKTELSKAL 563

Query: 74  A 74
           A
Sbjct: 564 A 564


>gi|195448324|ref|XP_002071607.1| GK10072 [Drosophila willistoni]
 gi|194167692|gb|EDW82593.1| GK10072 [Drosophila willistoni]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|146415292|ref|XP_001483616.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A  +GA F+K+   +  ++ ++G    +++RD   +A
Sbjct: 206 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQM-FIGDGA-KLVRDAFALA 261


>gi|167647098|ref|YP_001684761.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           sp. K31]
 gi|167349528|gb|ABZ72263.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           sp. K31]
          Length = 773

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 18/113 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+  +L   + GQ +A   ++ A++         A LRD   P  + L  GPTGVGK
Sbjct: 455 SLRELERDLKGAVFGQDEALAQLSSAMKLAR------AGLRDPDKPIGSYLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           T  +++LA   G   I+ +++++ E            GYVG +    + D VD
Sbjct: 509 TEAAKQLASTLGIEMIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGQLTDAVD 561


>gi|50309131|ref|XP_454571.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643706|emb|CAG99658.1| KLLA0E13773p [Kluyveromyces lactis]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 251 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 306


>gi|74147276|dbj|BAE27531.1| unnamed protein product [Mus musculus]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|332879985|ref|ZP_08447669.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681981|gb|EGJ54894.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 655

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RDL   A
Sbjct: 225 IPRGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 281


>gi|320106224|ref|YP_004181814.1| ATPase AAA-2 domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319924745|gb|ADV81820.1| ATPase AAA-2 domain protein [Terriglobus saanensis SP1PR4]
          Length = 826

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +I Q+ A  A+A A+R R R     A L++   P  + L +GPTGVGKT ++R L
Sbjct: 506 ELHKRVISQEKAISALARAIR-RSR-----AGLKNPARPIGSFLFLGPTGVGKTEMARTL 559

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A+    +    I+ ++++F E            GYVG
Sbjct: 560 AQFLFGSEKSLIRFDMSEFMEKHSVSKLIGSPPGYVG 596


>gi|307197462|gb|EFN78696.1| Paraplegin [Harpegnathos saltator]
          Length = 708

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109
           +P+  LL+GP G GKT +++ +A  A  PF+ +  ++F E+  G     V  + ++    
Sbjct: 273 VPQGALLLGPPGCGKTLLAKAVATEASVPFLSMNGSEFIEVFGGLGAARVRDLFKEAKKR 332

Query: 110 AINIVRESRRDEVREQAS------INAE-ERILDALV 139
           A +I+     D + ++ S      IN+E ER L+ L+
Sbjct: 333 APSIIYIDEIDAIGKKRSDNSLGIINSESERTLNQLL 369


>gi|301154176|emb|CBA35188.1| CG16916 protein [Drosophila melanogaster]
          Length = 413

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A 
Sbjct: 167 MQKQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAS 221

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 222 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 249


>gi|296273989|ref|YP_003656620.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098163|gb|ADG94113.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Arcobacter
           nitrofigilis DSM 7299]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           R +   + + + GQ DA  ++  +++ NR       A L  E  P  + L  GPTGVGKT
Sbjct: 449 RSLEKNMQKRVFGQNDAIVSIVKSIKINR-------AGLGGESKPVGSFLFTGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            +++ L+   G  F + +++++ E   V R
Sbjct: 502 EVAKELSSQLGVHFERFDMSEYMEAHTVSR 531


>gi|296243008|ref|YP_003650495.1| proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
 gi|296095592|gb|ADG91543.1| Proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 17/103 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT +++ +A  AGA FI +  ++  +  ++G    +I+R+L   A  
Sbjct: 169 PKGVLLYGPPGCGKTMLAKAVASEAGATFISIVGSELVQ-KFIGEGA-RIVRELFAYA-- 224

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFR 152
                RR   +  A I  +E  +DA+  K     TS  REV R
Sbjct: 225 -----RR---KAPAIIFIDE--IDAIAAKRIDIGTSGEREVQR 257


>gi|283455701|ref|YP_003360265.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
           dentium Bd1]
 gi|283102335|gb|ADB09441.1| clpC Negative regulator of genetic competence clpC/mecB
           [Bifidobacterium dentium Bd1]
          Length = 863

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTELAKT 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|261247854|emb|CBG25683.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|212716932|ref|ZP_03325060.1| hypothetical protein BIFCAT_01876 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660217|gb|EEB20792.1| hypothetical protein BIFCAT_01876 [Bifidobacterium catenulatum DSM
           16992]
          Length = 858

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTELAKT 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|94501391|ref|ZP_01307911.1| cell division protein FtsH [Oceanobacter sp. RED65]
 gi|94426504|gb|EAT11492.1| cell division protein FtsH [Oceanobacter sp. RED65]
          Length = 644

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 172 LRDPAKYQRLGGQI-----PRGVLMVGQPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM- 225

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+ D A
Sbjct: 226 FVGVGASR-VRDMFDQA 241


>gi|56756889|gb|AAW26616.1| SJCHGC09284 protein [Schistosoma japonicum]
 gi|226471214|emb|CAX70688.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
 gi|226488012|emb|CAX75671.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
 gi|226488014|emb|CAX75672.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 264


>gi|27735425|gb|AAH41186.1| Psmc2 protein [Xenopus laevis]
          Length = 444

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 220 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 275


>gi|328788555|ref|XP_393080.4| PREDICTED: spastin [Apis mellifera]
          Length = 712

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A    A
Sbjct: 440 IAGQETAKQALQEMVILPSLRPELFTGLRTPA--RGLLLFGPPGNGKTLLARAVATQCNA 497

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +     T   YVG   E+++R L  +A
Sbjct: 498 TFFSISAASLTS-KYVGEG-EKLVRALFSIA 526


>gi|326793262|ref|YP_004311083.1| ATPase AAA [Clostridium lentocellum DSM 5427]
 gi|326544026|gb|ADZ85885.1| ATPase AAA-2 domain protein [Clostridium lentocellum DSM 5427]
          Length = 737

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           ++L VGPTGVGKT I++ LA   G   I+ +++++TE
Sbjct: 481 SLLFVGPTGVGKTEIAKCLANELGIKLIRFDMSEYTE 517


>gi|325191470|emb|CCA26243.1| peroxisome biogenesis factor putative [Albugo laibachii Nc14]
          Length = 1135

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P  +LL GP G GKT I+  +A   G  FI V+  +     Y+G + EQ IRDL
Sbjct: 862 LPAGLLLFGPPGCGKTLIASAVAAECGLNFISVKGPEVLS-KYIGAS-EQAIRDL 914


>gi|323173093|gb|EFZ58724.1| ATP-dependent chaperone ClpB [Escherichia coli LT-68]
 gi|332089246|gb|EGI94353.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 155-74]
 gi|332091986|gb|EGI97064.1| ATP-dependent chaperone ClpB [Shigella boydii 3594-74]
          Length = 798

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 505 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 558

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 559 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|312599158|gb|ADQ91181.1| hypothetical protein BpV2_014c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 686

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL G  G GKT ++R +A  +  PFI+   + F E+ +VG   ++ +RD+  +A
Sbjct: 258 IPKGALLTGKPGTGKTLLARAIAGESSVPFIQCSGSSFVEM-FVGVGAKR-VRDIFKLA 314


>gi|307243262|ref|ZP_07525433.1| ATP-dependent chaperone protein ClpB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493390|gb|EFM65372.1| ATP-dependent chaperone protein ClpB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 862

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 9/64 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           ++L + +IGQ +A  AV+ A LR+R       A L D+  P  + + +GPTGVGKT +++
Sbjct: 571 NQLHKRVIGQDEAVTAVSNAILRSR-------AGLSDQKKPMGSFIFLGPTGVGKTELAK 623

Query: 72  RLAR 75
            LAR
Sbjct: 624 TLAR 627


>gi|240142543|ref|YP_002967054.1| putative ATP-dependent protease ATP-binding subunit
           [Methylobacterium extorquens AM1]
 gi|240012488|gb|ACS43713.1| Putative ATP-dependent protease ATP-binding subunit
           [Methylobacterium extorquens AM1]
          Length = 871

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L + ++GQ  A RAV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 565 QLIKRVVGQTQAVRAVSTAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELAKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 619 AEFMFDDETAMVRIDMSEFMEKHSVAR 645


>gi|226304135|ref|YP_002764093.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           erythropolis PR4]
 gi|229494287|ref|ZP_04388050.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
 gi|226183250|dbj|BAH31354.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Rhodococcus erythropolis PR4]
 gi|229318649|gb|EEN84507.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
          Length = 847

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ++A ++V+ A+R R R     A L+D   P  + +  GP+GVGKT +++ L
Sbjct: 511 ELHKRIIGQEEAVKSVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELAKSL 564

Query: 74  A 74
           A
Sbjct: 565 A 565


>gi|222631844|gb|EEE63976.1| hypothetical protein OsJ_18802 [Oryza sativa Japonica Group]
          Length = 792

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  L VGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 324 LKNPKKYEELGAKI-----PKGALPVGPPGTGKTLLAKATAGESGLPFLSISGSDFMEM- 377

Query: 94  YVG------RNVEQIIRDLVDVAINI 113
           +VG      RN+ Q  R      I I
Sbjct: 378 FVGVGPSRVRNLFQEARQCAPSIIFI 403


>gi|193582371|ref|XP_001950696.1| PREDICTED: AFG3-like protein 2-like [Acyrthosiphon pisum]
          Length = 764

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  +L GP G GKT +++  A  A  PF+ V  ++F E+ +VG    + +RD+  +A
Sbjct: 314 IPKGAMLTGPPGTGKTLLAKATAGEADVPFLSVSGSEFLEM-FVGVGPSR-VRDMFTMA 370


>gi|189500912|ref|YP_001960382.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
 gi|189496353|gb|ACE04901.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
          Length = 659

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  A  PF  +    F E+ +VG    + +RDL + A
Sbjct: 242 IPKGVLLLGSPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 298


>gi|91211926|ref|YP_541912.1| protein disaggregation chaperone [Escherichia coli UTI89]
 gi|117624816|ref|YP_853729.1| protein disaggregation chaperone [Escherichia coli APEC O1]
 gi|237706819|ref|ZP_04537300.1| heat shock protein [Escherichia sp. 3_2_53FAA]
 gi|91073500|gb|ABE08381.1| heat shock protein [Escherichia coli UTI89]
 gi|115513940|gb|ABJ02015.1| heat shock protein [Escherichia coli APEC O1]
 gi|226899859|gb|EEH86118.1| heat shock protein [Escherichia sp. 3_2_53FAA]
 gi|315284809|gb|EFU44254.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 110-3]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|56480150|ref|NP_708444.2| protein disaggregation chaperone [Shigella flexneri 2a str. 301]
 gi|56383701|gb|AAN44151.2| heat shock protein [Shigella flexneri 2a str. 301]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|84489998|ref|YP_448230.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373317|gb|ABC57587.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM
           3091]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +L  GP G GKT +++ +A    A FIK+  ++F +  Y+G    +++R + ++A
Sbjct: 183 PKGVLFYGPPGTGKTLLAKAVAHETNATFIKIVASEFVK-KYIGEG-SRLVRGVFELA 238


>gi|325688235|gb|EGD30254.1| ATP-dependent Clp protease [Streptococcus sanguinis SK72]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKTHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|323971463|gb|EGB66699.1| ATP-dependent chaperone ClpB [Escherichia coli TA007]
          Length = 809

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 516 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 569

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 570 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 599


>gi|323167772|gb|EFZ53467.1| ATP-dependent chaperone ClpB [Shigella sonnei 53G]
          Length = 823

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 530 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 583

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 584 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 613


>gi|307108287|gb|EFN56527.1| hypothetical protein CHLNCDRAFT_30648 [Chlorella variabilis]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 13/93 (13%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLARLA 77
           I +Q+ K AV + L        +  DL +++    P+ +LL GP G GKT +++ +A   
Sbjct: 166 IQKQEIKEAVELPL--------VQGDLYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 217

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 218 TASFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 248


>gi|291333224|gb|ADD92934.1| putative ATPase family associated with various cellular activities
           AAA [uncultured archaeon MedDCM-OCT-S04-C14]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQI 102
           PK +LLVGP G GKT +++ +A    A FI++  ++  +  IG  GR V ++
Sbjct: 182 PKGVLLVGPPGCGKTLLAKAVANHTNATFIRMVGSELAQKYIGEGGRMVREL 233


>gi|254482819|ref|ZP_05096056.1| ATP-dependent chaperone ClpB [marine gamma proteobacterium
           HTCC2148]
 gi|214036900|gb|EEB77570.1| ATP-dependent chaperone ClpB [marine gamma proteobacterium
           HTCC2148]
          Length = 854

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL   ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 561 ELHSRVVGQDEAVVAVSNAVR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKAL 614

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    ++V++++F E   V R
Sbjct: 615 AEFLFDSEQAMVRVDMSEFMEKHSVAR 641


>gi|194378722|dbj|BAG63526.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 27/100 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 142 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 192

Query: 73  LARL----AGAPFIKVEVTKFTE-----------IGYVGR 97
            A+     A   FI++++++F E            GYVG 
Sbjct: 193 TAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGH 232


>gi|299140384|ref|ZP_07033544.1| ATPase AAA-2 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298597634|gb|EFI53812.1| ATPase AAA-2 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 825

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +I Q  A  A+A A+R R R     A L++   P  + L +GPTGVGKT ++R L
Sbjct: 506 ELHKRVIAQDKAISALARAIR-RSR-----AGLKNPARPIGSFLFLGPTGVGKTEVARTL 559

Query: 74  ARL---AGAPFIKVEVTKFTE-----------IGYVG 96
           A+    +    I+ ++++F E            GYVG
Sbjct: 560 AQFLFGSEKSLIRFDMSEFMEKHSVSKLIGSPPGYVG 596


>gi|261333876|emb|CBH16871.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 577

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108
           +PK  LL G  G GKT +++ +A  AG PF       F E+ Y G   + V ++  +   
Sbjct: 139 LPKGCLLTGQPGTGKTLLAKAVAGEAGVPFFSCSGADFIEV-YAGSGPKRVRELFAEAKK 197

Query: 109 VAINIV 114
           VA ++V
Sbjct: 198 VAPSVV 203


>gi|257457408|ref|ZP_05622579.1| ATP-dependent chaperone protein ClpB [Treponema vincentii ATCC
           35580]
 gi|257445330|gb|EEV20402.1| ATP-dependent chaperone protein ClpB [Treponema vincentii ATCC
           35580]
          Length = 858

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
           S L + ++GQ  A +AVA A+R NR       A L D   P  + L +GPTGVGKT ++R
Sbjct: 568 SVLQKRVVGQDQAVQAVADAIRRNR-------AGLSDPNRPLGSFLCIGPTGVGKTELAR 620

Query: 72  RLA 74
            LA
Sbjct: 621 TLA 623


>gi|225352751|ref|ZP_03743774.1| hypothetical protein BIFPSEUDO_04381 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156358|gb|EEG69927.1| hypothetical protein BIFPSEUDO_04381 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTELAKT 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|213402955|ref|XP_002172250.1| lon protease Lon1 [Schizosaccharomyces japonicus yFS275]
 gi|212000297|gb|EEB05957.1| lon protease Lon1 [Schizosaccharomyces japonicus yFS275]
          Length = 1062

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 47  LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG--------YVGRN 98
           LR  +  K I LVGP GVGKT+I R +AR     F +  V   T++         YVG  
Sbjct: 554 LRGTMQGKIICLVGPPGVGKTSIGRSIARSLNREFYRFSVGGLTDVAEIKGHRRTYVGAM 613

Query: 99  VEQIIRDLVDV 109
             ++I+ L  V
Sbjct: 614 PGKVIQALKKV 624


>gi|315230714|ref|YP_004071150.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP]
 gi|315183742|gb|ADT83927.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ LAR   A FI+V  ++     Y+G    +++ +L ++A
Sbjct: 173 PKGVLLYGPPGCGKTLMAKALAREVNATFIRVVGSELVR-KYIGEGA-RLVHELFELA 228


>gi|167378685|ref|XP_001734886.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165903356|gb|EDR28931.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  T+  +  Y+G    +++R+L  +A
Sbjct: 153 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQ-KYIGEG-SRMVRELFVMA 208


>gi|146318045|ref|YP_001197757.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|145688851|gb|ABP89357.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 05ZYH33]
          Length = 250

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 58  KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 110

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 111 ELAKQLA 117


>gi|157820633|ref|NP_001103117.1| hypothetical protein LOC691729 [Rattus norvegicus]
 gi|149023148|gb|EDL80042.1| rCG26603 [Rattus norvegicus]
          Length = 747

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDV 109
           +P+ +LL GP GVGKT + R +AR AGA  + V       T  G    NV ++ +   ++
Sbjct: 226 VPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGTRPGETEENVRRVFQRAQEL 285

Query: 110 A 110
           A
Sbjct: 286 A 286


>gi|56698102|ref|YP_168473.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Ruegeria
           pomeroyi DSS-3]
 gi|56679839|gb|AAV96505.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Ruegeria
           pomeroyi DSS-3]
          Length = 872

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ  A  AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 564 ELHKRVIGQGTAVTAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 617

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 618 ANYLFDDDNAMVRIDMSEFMEKHAVAR 644


>gi|17137738|ref|NP_477473.1| Rpt1 [Drosophila melanogaster]
 gi|6434952|gb|AAF08388.1|AF145307_1 26S proteasome regulatory complex subunit p48B [Drosophila
           melanogaster]
 gi|7304183|gb|AAF59219.1| Rpt1 [Drosophila melanogaster]
 gi|16769870|gb|AAL29154.1| SD07148p [Drosophila melanogaster]
 gi|220946836|gb|ACL85961.1| Rpt1-PA [synthetic construct]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|15803116|ref|NP_289147.1| protein disaggregation chaperone [Escherichia coli O157:H7 EDL933]
 gi|26248955|ref|NP_754995.1| protein disaggregation chaperone [Escherichia coli CFT073]
 gi|227888159|ref|ZP_04005964.1| endopeptidase Clp [Escherichia coli 83972]
 gi|254037669|ref|ZP_04871727.1| heat shock protein [Escherichia sp. 1_1_43]
 gi|291283865|ref|YP_003500683.1| Heat shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|293406102|ref|ZP_06650028.1| disaggregation chaperone [Escherichia coli FVEC1412]
 gi|293415865|ref|ZP_06658505.1| ATP-dependent chaperone ClpB [Escherichia coli B185]
 gi|293448944|ref|ZP_06663365.1| ATP-dependent chaperone ClpB [Escherichia coli B088]
 gi|298381834|ref|ZP_06991431.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Escherichia
           coli FVEC1302]
 gi|300819934|ref|ZP_07100117.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 107-1]
 gi|300900222|ref|ZP_07118408.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 198-1]
 gi|300905088|ref|ZP_07122895.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 84-1]
 gi|300921136|ref|ZP_07137517.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 115-1]
 gi|300922524|ref|ZP_07138633.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 182-1]
 gi|300930683|ref|ZP_07146067.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 187-1]
 gi|300940371|ref|ZP_07154959.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 21-1]
 gi|300948986|ref|ZP_07163042.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 116-1]
 gi|300957375|ref|ZP_07169592.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 175-1]
 gi|300976570|ref|ZP_07173522.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 200-1]
 gi|300986851|ref|ZP_07177834.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 45-1]
 gi|301026352|ref|ZP_07189800.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 69-1]
 gi|301050461|ref|ZP_07197343.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 185-1]
 gi|301305762|ref|ZP_07211849.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 124-1]
 gi|301326708|ref|ZP_07220026.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 78-1]
 gi|301644034|ref|ZP_07244052.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 146-1]
 gi|309794105|ref|ZP_07688529.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 145-7]
 gi|331643309|ref|ZP_08344440.1| ATP-dependent chaperone protein ClpB [Escherichia coli H736]
 gi|331648336|ref|ZP_08349424.1| ATP-dependent chaperone protein ClpB [Escherichia coli M605]
 gi|331678586|ref|ZP_08379260.1| ATP-dependent chaperone protein ClpB [Escherichia coli H591]
 gi|332280712|ref|ZP_08393125.1| heat shock protein [Shigella sp. D9]
 gi|25289895|pir||E85905 heat shock protein [imported] - Escherichia coli (strain O157:H7,
           substrain EDL933)
 gi|12517013|gb|AAG57705.1|AE005489_4 heat shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109361|gb|AAN81563.1|AE016764_245 ClpB protein [Escherichia coli CFT073]
 gi|209762698|gb|ACI79661.1| heat shock protein [Escherichia coli]
 gi|209762700|gb|ACI79662.1| heat shock protein [Escherichia coli]
 gi|209762702|gb|ACI79663.1| heat shock protein [Escherichia coli]
 gi|209762704|gb|ACI79664.1| heat shock protein [Escherichia coli]
 gi|209762706|gb|ACI79665.1| heat shock protein [Escherichia coli]
 gi|226839293|gb|EEH71314.1| heat shock protein [Escherichia sp. 1_1_43]
 gi|227834799|gb|EEJ45265.1| endopeptidase Clp [Escherichia coli 83972]
 gi|290763738|gb|ADD57699.1| Heat shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|291322034|gb|EFE61463.1| ATP-dependent chaperone ClpB [Escherichia coli B088]
 gi|291426108|gb|EFE99140.1| disaggregation chaperone [Escherichia coli FVEC1412]
 gi|291432054|gb|EFF05036.1| ATP-dependent chaperone ClpB [Escherichia coli B185]
 gi|298276974|gb|EFI18490.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Escherichia
           coli FVEC1302]
 gi|300297832|gb|EFJ54217.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 185-1]
 gi|300308512|gb|EFJ63032.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 200-1]
 gi|300315878|gb|EFJ65662.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 175-1]
 gi|300356257|gb|EFJ72127.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 198-1]
 gi|300395567|gb|EFJ79105.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 69-1]
 gi|300403015|gb|EFJ86553.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 84-1]
 gi|300407861|gb|EFJ91399.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 45-1]
 gi|300411909|gb|EFJ95219.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 115-1]
 gi|300421136|gb|EFK04447.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 182-1]
 gi|300451543|gb|EFK15163.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 116-1]
 gi|300454825|gb|EFK18318.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 21-1]
 gi|300461457|gb|EFK24950.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 187-1]
 gi|300527522|gb|EFK48584.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 107-1]
 gi|300839016|gb|EFK66776.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 124-1]
 gi|300846631|gb|EFK74391.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 78-1]
 gi|301077608|gb|EFK92414.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 146-1]
 gi|308122010|gb|EFO59272.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 145-7]
 gi|315253120|gb|EFU33088.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 85-1]
 gi|315290939|gb|EFU50304.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 153-1]
 gi|324005832|gb|EGB75051.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 57-2]
 gi|324012458|gb|EGB81677.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 60-1]
 gi|324016581|gb|EGB85800.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 117-3]
 gi|331036780|gb|EGI09004.1| ATP-dependent chaperone protein ClpB [Escherichia coli H736]
 gi|331042083|gb|EGI14225.1| ATP-dependent chaperone protein ClpB [Escherichia coli M605]
 gi|331073416|gb|EGI44737.1| ATP-dependent chaperone protein ClpB [Escherichia coli H591]
 gi|332103064|gb|EGJ06410.1| heat shock protein [Shigella sp. D9]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|20094314|ref|NP_614161.1| proteasome-activating nucleotidase [Methanopyrus kandleri AV19]
 gi|22096006|sp|Q8TX03|PAN_METKA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|19887363|gb|AAM02091.1| ATP-dependent 26S proteasome regulatory subunit [Methanopyrus
           kandleri AV19]
          Length = 436

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A  A A FI++   +  +  ++G    +++R+L ++A
Sbjct: 213 PKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQ-KFIGEGA-RLVRELFELA 268


>gi|89092940|ref|ZP_01165892.1| ATP-binding protease component ClpA [Oceanospirillum sp. MED92]
 gi|89082965|gb|EAR62185.1| ATP-binding protease component ClpA [Oceanospirillum sp. MED92]
          Length = 751

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRR 72
           S L   ++GQ +A   ++ A++         A L++   P    L  GPTGVGKT ++++
Sbjct: 455 SNLKMVVLGQDEAIDTLSSAIKLSR------AGLKEPNKPVGCFLFAGPTGVGKTEVTQQ 508

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LAR+ G   ++ +++++ E   V R
Sbjct: 509 LARIMGIELVRFDMSEYMERHTVSR 533


>gi|71749490|ref|XP_828084.1| ATP-dependent zinc metallopeptidase [Trypanosoma brucei TREU927]
 gi|70833468|gb|EAN78972.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei]
          Length = 577

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108
           +PK  LL G  G GKT +++ +A  AG PF       F E+ Y G   + V ++  +   
Sbjct: 139 LPKGCLLTGQPGTGKTLLAKAVAGEAGVPFFSCSGADFIEV-YAGSGPKRVRELFAEAKK 197

Query: 109 VAINIV 114
           VA ++V
Sbjct: 198 VAPSVV 203


>gi|4506209|ref|NP_002794.1| 26S protease regulatory subunit 7 1 [Homo sapiens]
 gi|62751409|ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus]
 gi|114615260|ref|XP_001159873.1| PREDICTED: proteasome 26S ATPase subunit 2 isoform 1 [Pan
           troglodytes]
 gi|114615262|ref|XP_519288.2| PREDICTED: 26S protease regulatory subunit 7 isoform 2 [Pan
           troglodytes]
 gi|301786591|ref|XP_002928709.1| PREDICTED: 26S protease regulatory subunit 7-like [Ailuropoda
           melanoleuca]
 gi|311264705|ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa]
 gi|332238048|ref|XP_003268215.1| PREDICTED: 26S protease regulatory subunit 7 [Nomascus leucogenys]
 gi|547930|sp|P35998|PRS7_HUMAN RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1
 gi|75070030|sp|Q5E9F9|PRS7_BOVIN RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|75075782|sp|Q4R4R0|PRS7_MACFA RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|219931|dbj|BAA01868.1| mammalian suppressor of sgv1 [Homo sapiens]
 gi|12803525|gb|AAH02589.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Homo
           sapiens]
 gi|51095169|gb|EAL24412.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Homo
           sapiens]
 gi|59858287|gb|AAX08978.1| proteasome 26S ATPase subunit 2 [Bos taurus]
 gi|67971146|dbj|BAE01915.1| unnamed protein product [Macaca fascicularis]
 gi|119603738|gb|EAW83332.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2, isoform
           CRA_b [Homo sapiens]
 gi|149046588|gb|EDL99413.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_d [Rattus norvegicus]
 gi|158455000|gb|AAI02392.2| Proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Bos taurus]
 gi|261858398|dbj|BAI45721.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [synthetic
           construct]
 gi|296488578|gb|DAA30691.1| 26S protease regulatory subunit 7 [Bos taurus]
 gi|228886|prf||1813280A tat-mediated transactivation modulator
          Length = 433

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|237729507|ref|ZP_04559988.1| disaggregation chaperone [Citrobacter sp. 30_2]
 gi|226908113|gb|EEH94031.1| disaggregation chaperone [Citrobacter sp. 30_2]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|260797851|ref|XP_002593914.1| hypothetical protein BRAFLDRAFT_234866 [Branchiostoma floridae]
 gi|229279146|gb|EEN49925.1| hypothetical protein BRAFLDRAFT_234866 [Branchiostoma floridae]
          Length = 663

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG 96
            PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E IG +G
Sbjct: 212 FPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEMIGGLG 257


>gi|206558941|ref|YP_002229701.1| putative ATPase [Burkholderia cenocepacia J2315]
 gi|198034978|emb|CAR50850.1| putative ATPase [Burkholderia cenocepacia J2315]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 43  LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           L  D R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V ++  T  G++
Sbjct: 89  LETDDRLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYVPMSSLTA-GWI 138


>gi|147920791|ref|YP_685403.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
 gi|110620799|emb|CAJ36077.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
          Length = 942

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDV 109
           PK +LL GP G GKT I++ +A    A FI +   +     Y G + +Q   I ++  D 
Sbjct: 216 PKGVLLFGPPGTGKTMIAKAVASETDAHFINISGPEIMS-KYYGESEKQLRDIFKEAEDN 274

Query: 110 AINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRKK 154
           A +I+     D +   RE+ +   E R+       +D L  +      A +N        
Sbjct: 275 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLSLMDGLQSRGQVVVVAATNRPNAVDPA 334

Query: 155 LRDGEISDKEIDIEVAD 171
           LR G   D+EI+I V D
Sbjct: 335 LRRGGRFDREIEIGVPD 351


>gi|56414627|ref|YP_151702.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181233|ref|YP_217650.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168262170|ref|ZP_02684143.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464169|ref|ZP_02698086.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822477|ref|ZP_02834477.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443281|ref|YP_002041924.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472869|ref|ZP_03078853.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736447|ref|YP_002115671.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248685|ref|YP_002147563.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197363554|ref|YP_002143191.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243260|ref|YP_002216671.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388055|ref|ZP_03214667.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929414|ref|ZP_03220488.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224584513|ref|YP_002638311.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909506|ref|ZP_04653343.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56128884|gb|AAV78390.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128866|gb|AAX66569.1| ATP-dependent protease, Hsp 100, part of novel multi-chaperone
           system with DnaK, DnaJ, and GrpE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194401944|gb|ACF62166.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194459233|gb|EDX48072.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711949|gb|ACF91170.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633279|gb|EDX51693.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095031|emb|CAR60577.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212388|gb|ACH49785.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197937776|gb|ACH75109.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605153|gb|EDZ03698.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321133|gb|EDZ06333.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205341135|gb|EDZ27899.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349068|gb|EDZ35699.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|224469040|gb|ACN46870.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320087093|emb|CBY96861.1| Chaperone protein clpB 2 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322614490|gb|EFY11421.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621445|gb|EFY18298.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624306|gb|EFY21139.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629395|gb|EFY26173.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633635|gb|EFY30377.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638322|gb|EFY35020.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639760|gb|EFY36443.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647378|gb|EFY43874.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650452|gb|EFY46862.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656055|gb|EFY52355.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661449|gb|EFY57674.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662649|gb|EFY58857.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667022|gb|EFY63197.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671391|gb|EFY67514.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677602|gb|EFY73665.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681572|gb|EFY77602.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683972|gb|EFY79982.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715719|gb|EFZ07290.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195541|gb|EFZ80719.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197914|gb|EFZ83037.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203092|gb|EFZ88124.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205333|gb|EFZ90308.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210517|gb|EFZ95401.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218202|gb|EGA02914.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221532|gb|EGA05945.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323230965|gb|EGA15083.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234683|gb|EGA18769.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238722|gb|EGA22772.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241421|gb|EGA25452.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246881|gb|EGA30848.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253280|gb|EGA37110.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257076|gb|EGA40785.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260451|gb|EGA44062.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264492|gb|EGA47998.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269627|gb|EGA53080.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624427|gb|EGE30772.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|323188385|gb|EFZ73676.1| ATP-dependent chaperone ClpB [Escherichia coli RN587/1]
          Length = 823

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 530 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 583

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 584 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 613


>gi|319941466|ref|ZP_08015794.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805086|gb|EFW01916.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sutterella
           wadsworthensis 3_1_45B]
          Length = 872

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 12/87 (13%)

Query: 16  LDRYIIGQQDA-KRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L++ +IGQ +A KR     LR+R       A L D   P  + L +GPTGVGKT +++ L
Sbjct: 573 LEKRVIGQDEAVKRVTETILRSR-------AGLSDPNRPYGSFLFLGPTGVGKTELTKAL 625

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 626 AEFLFDTDEAMIRIDMSEFMEKHSVAR 652


>gi|312913650|dbj|BAJ37624.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|309790848|ref|ZP_07685392.1| ATPase [Oscillochloris trichoides DG6]
 gi|308227135|gb|EFO80819.1| ATPase [Oscillochloris trichoides DG6]
          Length = 840

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 21/92 (22%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           +IGQQ+A   ++ A+R R R     A L+D   P  + + +GPTGVGKT +++ LA    
Sbjct: 522 VIGQQEAVVTISKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELAKTLAEFMF 575

Query: 77  -AGAPFIKVEVTKFTE-----------IGYVG 96
            A    IK+++++F E            GYVG
Sbjct: 576 GAEESLIKIDMSEFQERHTTSRLVGSPPGYVG 607


>gi|289740279|gb|ADD18887.1| 26S proteasome regulatory complex ATPase RPT1 [Glossina morsitans
           morsitans]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|229494809|ref|ZP_04388565.1| ATPase AAA-2 domain protein [Rhodococcus erythropolis SK121]
 gi|229318305|gb|EEN84170.1| ATPase AAA-2 domain protein [Rhodococcus erythropolis SK121]
          Length = 344

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 11/71 (15%)

Query: 7  FSPREIVSELDRYIIGQQDAKRAV--AIALRNRWRRQQLPADLRDELMP-KNILLVGPTG 63
          F  R++   L   I+GQQ A  AV  AI++ +            D   P  NILLVGPTG
Sbjct: 24 FDARKLSKALSSKIVGQQAAVDAVVRAISIAH--------VGATDPTRPLANILLVGPTG 75

Query: 64 VGKTAISRRLA 74
          VGKT + RR+A
Sbjct: 76 VGKTELVRRVA 86


>gi|218260369|ref|ZP_03475725.1| hypothetical protein PRABACTJOHN_01388 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224560|gb|EEC97210.1| hypothetical protein PRABACTJOHN_01388 [Parabacteroides johnsonii
           DSM 18315]
          Length = 862

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTG 63
           N    E+   L + ++GQ DA + +  A+ RNR         L+D   P    + +GPTG
Sbjct: 540 NLKLLEMAENLKKKVVGQDDAVQKIVKAIQRNR-------VGLKDPNKPIGTFMFLGPTG 592

Query: 64  VGKTAISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           VGKT ++++LA     +    ++++++++ E   V R
Sbjct: 593 VGKTHLAKKLAEYLFDSADALVRIDMSEYLEKFAVSR 629


>gi|212526766|ref|XP_002143540.1| proteasome regulatory particle subunit Rpt3, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072938|gb|EEA27025.1| proteasome regulatory particle subunit Rpt3, putative [Penicillium
           marneffei ATCC 18224]
          Length = 329

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +LL GP G GKT + + +A    A FI
Sbjct: 82  KQEIREAVELPLTHTDLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSTTASFI 136

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 137 RVVGSEFVQ-KYLGEG-PRMVRDVFRMA 162


>gi|212526764|ref|XP_002143539.1| proteasome regulatory particle subunit Rpt3, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072937|gb|EEA27024.1| proteasome regulatory particle subunit Rpt3, putative [Penicillium
           marneffei ATCC 18224]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    QQ+  D      P+ +LL GP G GKT + + +A    A FI
Sbjct: 175 KQEIREAVELPLTHTDLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSTTASFI 229

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 230 RVVGSEFVQ-KYLGEG-PRMVRDVFRMA 255


>gi|220935007|ref|YP_002513906.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996317|gb|ACL72919.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L+  + GQ +A   +A A++         + L D   P  + L  GPTGVGKT ++R+LA
Sbjct: 458 LNMVVFGQDEAISTLAAAIK------MARSGLGDGQKPIGSFLFAGPTGVGKTEVTRQLA 511

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
            L G   ++ +++++ E   V R
Sbjct: 512 DLLGIELVRFDMSEYMERHTVSR 534


>gi|194209436|ref|XP_001914838.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 2
           [Equus caballus]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|163792806|ref|ZP_02186783.1| shikimate kinase [alpha proteobacterium BAL199]
 gi|159182511|gb|EDP67020.1| shikimate kinase [alpha proteobacterium BAL199]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           ++  +PK ++LVG  G GK++I RRLA+  G  F+  +V   T     GR + +I  +L 
Sbjct: 24  QETCLPKTLVLVGLMGAGKSSIGRRLAQRFGVDFLDADVEIETA---AGRTIPEIFEELG 80

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
           + A    R+  R  +R     +    +L    G    ++TR V R+K
Sbjct: 81  EAAF---RDGERRVIRRLLE-DRTPHVLATGGGAFMAADTRAVVREK 123


>gi|163804105|ref|ZP_02197890.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
 gi|159172082|gb|EDP57036.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
          Length = 117

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+A  A+   +
Sbjct: 1   LPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFREDALRAIAKKAMERKT 60

Query: 380 TVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415
                GAR L++++E VL +  +   SA+D+ +  VVID
Sbjct: 61  -----GARGLRSILESVLLETMYELPSATDVSK--VVID 92


>gi|154151966|ref|YP_001405584.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000518|gb|ABS56941.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT I++ +A  +GA FI V   +     +G   R V +I +    V+
Sbjct: 492 PKGVLLFGPPGTGKTLIAKAVASESGANFIPVRGPQLLSKWVGESERAVREIFKKARQVS 551

Query: 111 INIV 114
            +I+
Sbjct: 552 PSII 555



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           PK +LL GP G GKT I++ +A  +GA FI +
Sbjct: 219 PKGVLLYGPPGTGKTLIAKAVASESGAHFISI 250


>gi|161899427|ref|XP_001712940.1| ATP binding subunit of Clp protease [Bigelowiella natans]
 gi|75756434|gb|ABA27328.1| ATP binding subunit of Clp protease [Bigelowiella natans]
          Length = 897

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A  AV+ A+R           LRD   P  + +  GPTGVGKT +++ L+
Sbjct: 588 LHKSVIGQEEAVTAVSKAMRKSR------VGLRDPKRPIASFIFAGPTGVGKTELAKTLS 641

Query: 75  RL 76
           R+
Sbjct: 642 RV 643


>gi|39936210|ref|NP_948486.1| endopeptidase Clp ATP-binding subunit A [Rhodopseudomonas palustris
           CGA009]
 gi|192291926|ref|YP_001992531.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris TIE-1]
 gi|39650065|emb|CAE28588.1| endopeptidase Clp: ATP-binding chain A [Rhodopseudomonas palustris
           CGA009]
 gi|192285675|gb|ACF02056.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris TIE-1]
          Length = 794

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ +++         A LR+   P    L  GPTGVGKT ++++LA
Sbjct: 464 LKRVVFGQDKAIEALSASIKLAR------AGLREPEKPIGCYLFSGPTGVGKTEVAKQLA 517

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 518 STLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 568


>gi|126340424|ref|XP_001364875.1| PREDICTED: hypothetical protein [Monodelphis domestica]
 gi|20532410|sp|P46471|PRS7_MOUSE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1
 gi|12836770|dbj|BAB23807.1| unnamed protein product [Mus musculus]
 gi|13529470|gb|AAH05462.1| Psmc2 protein [Mus musculus]
 gi|74214370|dbj|BAE40423.1| unnamed protein product [Mus musculus]
 gi|148671245|gb|EDL03192.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_e [Mus musculus]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|58377204|ref|XP_309476.2| AGAP011174-PA [Anopheles gambiae str. PEST]
 gi|55244811|gb|EAA05145.2| AGAP011174-PA [Anopheles gambiae str. PEST]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|327479114|gb|AEA82424.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 644

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           +IG  +AK+A   V   LR+     +L A       PK +LL G  G GKT +++ LA  
Sbjct: 165 VIGAAEAKQALSDVTAYLRDPGAYARLGAR-----PPKGVLLTGEPGTGKTQLAKALASE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI 102
           + A FI+V  + F+ + Y G  ++++
Sbjct: 220 SNASFIQVTGSDFSSM-YFGVGIQKV 244


>gi|311278478|ref|YP_003940709.1| ATP-dependent chaperone ClpB [Enterobacter cloacae SCF1]
 gi|308747673|gb|ADO47425.1| ATP-dependent chaperone ClpB [Enterobacter cloacae SCF1]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|298675717|ref|YP_003727467.1| microtubule-severing ATPase [Methanohalobium evestigatum Z-7303]
 gi|298288705|gb|ADI74671.1| Microtubule-severing ATPase [Methanohalobium evestigatum Z-7303]
          Length = 477

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           SP ++  + D  I G ++AK+    VA  ++  +  ++  A+      P  ILL GP G 
Sbjct: 196 SPEQLNVKFDD-IGGCEEAKKELDMVAYGIKYPYVFEEYQAE-----HPHGILLFGPPGT 249

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +++ +A     PFI V  +      Y     EQ I+++ +++
Sbjct: 250 GKTLLAKAVATELETPFIHVHGSDIVSKWY--GEAEQNIKEMFEIS 293


>gi|237737631|ref|ZP_04568112.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Fusobacterium
          mortiferum ATCC 9817]
 gi|229419511|gb|EEO34558.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Fusobacterium
          mortiferum ATCC 9817]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
          M K I++ GPTGVGKTA+S +LA+L  A  I
Sbjct: 1  MKKGIVIAGPTGVGKTALSIKLAKLLDADII 31


>gi|157376629|ref|YP_001475229.1| ATPase [Shewanella sediminis HAW-EB3]
 gi|157319003|gb|ABV38101.1| ATPase AAA-2 domain protein [Shewanella sediminis HAW-EB3]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVDAVSNAIR-RSR-----AGLSDPDRPIGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +      +  +++++++F E   V R
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHSVAR 645


>gi|149639275|ref|XP_001507929.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 252 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 307


>gi|32267063|ref|NP_861095.1| ATP-dependent Clp protease ClpB [Helicobacter hepaticus ATCC 51449]
 gi|32263115|gb|AAP78161.1| ATP-dependent CLP protease ClpB [Helicobacter hepaticus ATCC 51449]
          Length = 758

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + +  GP+GVGKT +++ LAR+ G  F+K +++++ E   + R
Sbjct: 483 SFVFAGPSGVGKTELAKELARILGIGFVKFDMSEYMESHSISR 525


>gi|39939181|ref|NP_950947.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39722290|dbj|BAD04780.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 502

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 49  DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           D++ PK  LL GP G GK+ + + L     A FI+ E +K  +  Y+G   E+
Sbjct: 106 DKIKPKGYLLYGPPGTGKSFLMKALCNETEAHFIEFEPSKLDKT-YIGEGTEE 157


>gi|16761514|ref|NP_457131.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765976|ref|NP_461591.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142985|ref|NP_806327.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|167992437|ref|ZP_02573535.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168244680|ref|ZP_02669612.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194448814|ref|YP_002046666.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197265769|ref|ZP_03165843.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|213051813|ref|ZP_03344691.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213649749|ref|ZP_03379802.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850142|ref|ZP_03381040.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289824160|ref|ZP_06543755.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54035784|sp|Q7AMH5|CLPB_SALTI RecName: Full=Chaperone protein ClpB
 gi|54035786|sp|Q7CQ01|CLPB_SALTY RecName: Full=Chaperone protein ClpB
 gi|25289914|pir||AI0831 ClpB protein (heat shock protein f84.1) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421207|gb|AAL21550.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503815|emb|CAD05840.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138617|gb|AAO70187.1| ClpB protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|194407118|gb|ACF67337.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197244024|gb|EDY26644.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329269|gb|EDZ16033.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336469|gb|EDZ23233.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|267994801|gb|ACY89686.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159207|emb|CBW18722.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|321223454|gb|EFX48519.1| ClpB protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130994|gb|ADX18424.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989585|gb|AEF08568.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|322831464|ref|YP_004211491.1| ATP-dependent chaperone ClpB [Rahnella sp. Y9602]
 gi|321166665|gb|ADW72364.1| ATP-dependent chaperone ClpB [Rahnella sp. Y9602]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHNRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ATFLFNSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|312143562|ref|YP_003995008.1| ATP-dependent chaperone ClpB [Halanaerobium sp. 'sapolanicus']
 gi|311904213|gb|ADQ14654.1| ATP-dependent chaperone ClpB [Halanaerobium sp. 'sapolanicus']
          Length = 860

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL++ ++GQ+DA  AV+ A+R R R       L+D   P  + L +GPTGVGKT +++ L
Sbjct: 571 ELEKRVVGQRDAVVAVSNAIR-RSR-----TGLQDADRPLASFLFMGPTGVGKTELAKTL 624

Query: 74  A 74
           A
Sbjct: 625 A 625


>gi|254582312|ref|XP_002497141.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
 gi|238940033|emb|CAR28208.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GKT ++R +A  + +
Sbjct: 559 IAGLESAKASLKEAVVYPFLRPDLFRGLREPI--RGMLLFGPPGTGKTMLARSVATESHS 616

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  V  +  T   Y+G + E+++R L  VA
Sbjct: 617 TFFSVSASTLTS-KYLGES-EKLVRALFAVA 645


>gi|256072775|ref|XP_002572709.1| 26S protease regulatory subunit [Schistosoma mansoni]
 gi|238657873|emb|CAZ28941.1| 26S protease regulatory subunit, putative [Schistosoma mansoni]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 264


>gi|207858010|ref|YP_002244661.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709813|emb|CAR34165.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|171743328|ref|ZP_02919135.1| hypothetical protein BIFDEN_02459 [Bifidobacterium dentium ATCC
           27678]
 gi|171278942|gb|EDT46603.1| hypothetical protein BIFDEN_02459 [Bifidobacterium dentium ATCC
           27678]
          Length = 863

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPSGSFIFAGPTGVGKTELAKT 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|167519056|ref|XP_001743868.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777830|gb|EDQ91446.1| predicted protein [Monosiga brevicollis MX1]
          Length = 442

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL GP G GKT +++ +A  A  PF  V  + F E+ +VG    + +RDL   A
Sbjct: 34  VPKGALLTGPPGTGKTLLAKAVAGEAQVPFFAVSGSDFVEM-FVGVGPSR-VRDLFKQA 90


>gi|62859545|ref|NP_001015906.1| AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene
           [Xenopus (Silurana) tropicalis]
 gi|89268083|emb|CAJ82930.1| AFG3 ATPase family gene 3-like 2 [Xenopus (Silurana) tropicalis]
 gi|213625687|gb|AAI71124.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Xenopus (Silurana)
           tropicalis]
 gi|213627137|gb|AAI70788.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Xenopus (Silurana)
           tropicalis]
          Length = 778

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q L A +     P+  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 309 LKNPKQYQDLGAKI-----PRGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 362

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RD+  +A
Sbjct: 363 FVGVGPAR-VRDMFAMA 378


>gi|197098688|ref|NP_001126144.1| 26S protease regulatory subunit 7 [Pongo abelii]
 gi|75070629|sp|Q5R8D7|PRS7_PONAB RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|55730503|emb|CAH91973.1| hypothetical protein [Pongo abelii]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|326437426|gb|EGD82996.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Salpingoeca
          sp. ATCC 50818]
          Length = 480

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFI---KVEVTKFTEIG 93
          E  PK ++L GPT VGKT +S RLAR+  A  +    V+V K  +IG
Sbjct: 34 EARPKAVVLTGPTAVGKTDLSIRLARILNAEIVSADSVQVYKGMDIG 80


>gi|323703795|ref|ZP_08115433.1| ATP-dependent chaperone ClpB [Desulfotomaculum nigrificans DSM 574]
 gi|323531264|gb|EGB21165.1| ATP-dependent chaperone ClpB [Desulfotomaculum nigrificans DSM 574]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 18/90 (20%)

Query: 16  LDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L R +IGQ +A +AVA A LR R       A ++D   P  + + +GPTGVGKT ++R L
Sbjct: 570 LHRRVIGQHEAVQAVADAVLRAR-------AGIKDPNRPIGSFIFLGPTGVGKTELARAL 622

Query: 74  ARLAGAPF------IKVEVTKFTEIGYVGR 97
           A+   A F      I+++++++ E   V R
Sbjct: 623 AQ---ALFDDERNMIRIDMSEYMEKHTVAR 649


>gi|317406406|gb|EFV86623.1| chaperone ClpB [Achromobacter xylosoxidans C54]
          Length = 868

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A R V+ A+R R R     A L D   P  + L +GPTGVGKT ++R LA
Sbjct: 575 LHKRVVGQDEAVRLVSDAIR-RSR-----AGLADPSRPYGSFLFLGPTGVGKTELTRALA 628

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I++++++F E   V R
Sbjct: 629 EFLFDSEEHMIRIDMSEFMEKHSVAR 654


>gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
 gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 211 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEAKK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 269 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 328

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 329 SLDPALRRGGRFDKEINLTV 348


>gi|303310921|ref|XP_003065472.1| ATP-dependent metalloprotease, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105134|gb|EER23327.1| ATP-dependent metalloprotease, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034637|gb|EFW16580.1| cell division protease ftsH [Coccidioides posadasii str. Silveira]
          Length = 914

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 461 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 517


>gi|229488549|ref|ZP_04382415.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
 gi|229324053|gb|EEN89808.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
          Length = 807

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL   +IGQ DA RA+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 502 RRLEEELHGRVIGQDDAVRAIARAVR-RSR-----TGMSDPDRPVGSFLFLGPTGVGKTE 555

Query: 69  ISRRLA 74
           +++ LA
Sbjct: 556 LAKALA 561


>gi|205353699|ref|YP_002227500.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273480|emb|CAR38457.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628805|gb|EGE35148.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|195425397|ref|XP_002060996.1| GK10708 [Drosophila willistoni]
 gi|194157081|gb|EDW71982.1| GK10708 [Drosophila willistoni]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|154492131|ref|ZP_02031757.1| hypothetical protein PARMER_01762 [Parabacteroides merdae ATCC
           43184]
 gi|154087356|gb|EDN86401.1| hypothetical protein PARMER_01762 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTG 63
           N    E+   L + ++GQ DA + +  A+ RNR         L+D   P    + +GPTG
Sbjct: 540 NLKLLEMAENLKKKVVGQDDAVQKIVKAIQRNR-------VGLKDPNKPIGTFMFLGPTG 592

Query: 64  VGKTAISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           VGKT ++++LA     +    ++++++++ E   V R
Sbjct: 593 VGKTHLAKKLAEYLFDSADALVRIDMSEYLEKFAVSR 629


>gi|118594452|ref|ZP_01551799.1| ATPase with chaperone activity [Methylophilales bacterium HTCC2181]
 gi|118440230|gb|EAV46857.1| ATPase with chaperone activity [Methylophilales bacterium HTCC2181]
          Length = 751

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 18/94 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   I GQ  A  +++ A++    R  L +D +    P  + L  GPTGVGKT ++R+L
Sbjct: 453 DLKAVIFGQNKAIESLSSAIK--MARSGLGSDNK----PIGSFLFSGPTGVGKTEVARQL 506

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVG 96
           A + G   ++++++++ E            GYVG
Sbjct: 507 AYILGIELVRIDMSEYMERHSVSKLIGAPPGYVG 540


>gi|116328082|ref|YP_797802.1| ATP-dependent Clp protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120826|gb|ABJ78869.1| ATP-dependent clp protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            L  GPTGVGKT ++R+LA + G   ++ +++++ E   V R
Sbjct: 484 FLFAGPTGVGKTELTRKLAEILGVELVRFDMSEYMEKHTVSR 525


>gi|157134067|ref|XP_001663131.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108870627|gb|EAT34852.1| 26S protease regulatory subunit [Aedes aegypti]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|74317255|ref|YP_314995.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056750|gb|AAZ97190.1| ATP-dependent Clp protease, ATP-binding subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 750

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           N L  GPTGVGKT ++R+LA + G   I+ +++++ E   V R
Sbjct: 489 NFLFSGPTGVGKTEVARQLAYVLGVELIRFDMSEYMERHAVSR 531


>gi|47507516|gb|AAH71038.1| LOC432063 protein [Xenopus laevis]
          Length = 788

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 332 IPRGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 388


>gi|32400784|gb|AAP80624.1|AF475102_1 tat binding protein [Triticum aestivum]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 22/132 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LL GP G GKT ++R  A    A F+K+   +  ++ ++G    +++RD  ++A  
Sbjct: 26  PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDGA-KLVRDAFELA-- 81

Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164
                     +E+A        +DA+  K   +  S  REV R  L      DG  SD+ 
Sbjct: 82  ----------KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDER 131

Query: 165 IDIEVADTSSDI 176
           I +  A   +DI
Sbjct: 132 IKVIAATNRADI 143


>gi|117927429|ref|YP_871980.1| ATPase [Acidothermus cellulolyticus 11B]
 gi|117647892|gb|ABK51994.1| ATPase AAA-2 domain protein [Acidothermus cellulolyticus 11B]
          Length = 839

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +A++ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 509 ELHKRVIGQDEAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKAL 562

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 563 AEFLFGDEDSLIQLDMSEFMEKHTVSR 589


>gi|332366072|gb|EGJ43828.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1059]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|330984323|gb|EGH82426.1| AAA ATPase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 681

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           P N++L GP GVGKT I+R LA+    P          + GYVG
Sbjct: 241 PFNVMLTGPAGVGKTKIARCLAKRLNIPMFYASAASL-QSGYVG 283


>gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
 gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
          Length = 851

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S RE+V E+ +     I GQ+  K+ +  A+   W  +   + +R  + P K ILL GP 
Sbjct: 573 SMREVVVEIPKVYWNDIGGQEHIKQKLKEAIE--WPLKHPESFIRMGIKPPKGILLYGPP 630

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G  KT +++ LA  +G  FI V+  +     +VG + E+ +RD+   A
Sbjct: 631 GCSKTLLAKALATESGLNFIAVKGPELLS-KWVGES-ERAVRDIFKKA 676


>gi|323352725|ref|ZP_08087695.1| ATP-dependent Clp protease [Streptococcus sanguinis VMC66]
 gi|322121761|gb|EFX93507.1| ATP-dependent Clp protease [Streptococcus sanguinis VMC66]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
 gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
          Length = 747

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 215 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEAKK 272

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 273 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 332

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 333 SLDPALRRGGRFDKEINLTV 352


>gi|261328142|emb|CBH11119.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 887

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AKR+V   +    +R +    LR    P+ +LL GP G GKT I+R +A  A  
Sbjct: 570 IAGLEHAKRSVEEVIVWPLQRPEFFVGLRGP--PRGLLLFGPPGTGKTMIARAIANRAQC 627

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            F  +  +      ++G + E+++R L  VA+
Sbjct: 628 TFFNISASSVMS-KWMG-DGEKLVRCLFAVAV 657


>gi|225023809|ref|ZP_03713001.1| hypothetical protein EIKCOROL_00674 [Eikenella corrodens ATCC
           23834]
 gi|224943408|gb|EEG24617.1| hypothetical protein EIKCOROL_00674 [Eikenella corrodens ATCC
           23834]
          Length = 765

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA + G P  + +++++ E   V R
Sbjct: 494 SFLFSGPTGVGKTEVARQLAYILGVPLQRFDMSEYMERHAVAR 536


>gi|224123612|ref|XP_002330164.1| predicted protein [Populus trichocarpa]
 gi|222871620|gb|EEF08751.1| predicted protein [Populus trichocarpa]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           Q+   A+ + + ++ R Q+L   +R    PK ILL GP G GKT ++R  A    A F+K
Sbjct: 180 QELVEAIVLPMTHKERFQKL--GIRP---PKGILLYGPPGTGKTLMARACAAQTNATFLK 234

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   +  ++ ++G    +++RD   +A
Sbjct: 235 LAGPQLVQM-FIGDGA-KLVRDAFQLA 259


>gi|221483002|gb|EEE21326.1| Clp ATP-binding chain B1, putative [Toxoplasma gondii GT1]
          Length = 1030

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + R L
Sbjct: 731 DLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELCRSL 784

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A L   +    +K++++++ E   + R
Sbjct: 785 AELMFDSEDAMVKIDMSEYMEKHTISR 811


>gi|221108162|ref|XP_002156452.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + P  ILL GP G GKT +++ +A  AG  FI V+  +   + YVG + E+ +R +   A
Sbjct: 104 VTPPGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNM-YVGES-EKAVRQVFQRA 161

Query: 111 IN 112
            N
Sbjct: 162 KN 163


>gi|237844597|ref|XP_002371596.1| chaperone clpB 1 protein, putative [Toxoplasma gondii ME49]
 gi|211969260|gb|EEB04456.1| chaperone clpB 1 protein, putative [Toxoplasma gondii ME49]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + R L
Sbjct: 723 DLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELCRSL 776

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A L   +    +K++++++ E   + R
Sbjct: 777 AELMFDSEDAMVKIDMSEYMEKHTISR 803


>gi|145351332|ref|XP_001420035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580268|gb|ABO98328.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 800

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +PK +LL GP G GKT ++R +A  A  PF     ++F E  +G   + V Q+ 
Sbjct: 345 LPKGVLLTGPPGTGKTLLARAVAGEADVPFFYRSGSEFEEMFVGVGSKRVRQLF 398


>gi|125717524|ref|YP_001034657.1| ATP dependent protease [Streptococcus sanguinis SK36]
 gi|125497441|gb|ABN44107.1| ATP dependent protease, putative [Streptococcus sanguinis SK36]
 gi|324995295|gb|EGC27207.1| ATP-dependent Clp protease [Streptococcus sanguinis SK678]
 gi|327461667|gb|EGF07998.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1]
 gi|327489520|gb|EGF21313.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1058]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|119194843|ref|XP_001248025.1| hypothetical protein CIMG_01796 [Coccidioides immitis RS]
          Length = 914

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 461 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 517


>gi|38181888|gb|AAH61542.1| Proteasome (prosome, macropain) 26S subunit, ATPase 2 [Rattus
           norvegicus]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|72381856|ref|YP_291211.1| ATPase [Prochlorococcus marinus str. NATL2A]
 gi|72001706|gb|AAZ57508.1| ATPase [Prochlorococcus marinus str. NATL2A]
          Length = 863

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL + +IGQ  A ++++ A+      Q+    L D   P  + L +GPTGVGKT +S+ 
Sbjct: 570 SELQKKVIGQDKAVQSISSAI------QRSRTGLSDPSRPIASFLFLGPTGVGKTELSKA 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    I+++++++ E   V R
Sbjct: 624 LASQLFDSENSLIRIDMSEYMEKHSVSR 651


>gi|47208144|emb|CAF93400.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|327469013|gb|EGF14485.1| ATP-dependent Clp protease [Streptococcus sanguinis SK330]
 gi|332361755|gb|EGJ39559.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1056]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|323448854|gb|EGB04747.1| hypothetical protein AURANDRAFT_55007 [Aureococcus anophagefferens]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  ++IR++   A
Sbjct: 187 PKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVD-KYIGESA-RVIREMFGFA 242


>gi|315649734|ref|ZP_07902818.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
 gi|315274922|gb|EFU38298.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
          Length = 818

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVSRAVR-RAR-----AGLKDPKRPMGSFIFLGPTGVGKTELARALA 559


>gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum]
          Length = 703

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT ++  +AR  G PFI +       +  V    E+++R+L + A  
Sbjct: 192 PCGVLLHGPPGCGKTMLANAIAREVGLPFIAISAPSI--VSGVSGEPEKMLRELFEEARG 249

Query: 113 IV 114
           I 
Sbjct: 250 IA 251


>gi|281420206|ref|ZP_06251205.1| negative regulator of genetic competence [Prevotella copri DSM
           18205]
 gi|281405701|gb|EFB36381.1| negative regulator of genetic competence [Prevotella copri DSM
           18205]
          Length = 892

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 23/105 (21%)

Query: 10  REIVSELDRYIIGQQDA-KRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKT 67
           +++   L   +I Q +A  + V   LRNR         LRD   P  + + +GPTGVGKT
Sbjct: 576 KDLEHNLKHKVIAQDNAINKMVKTILRNR-------VGLRDPNHPIGVFMFLGPTGVGKT 628

Query: 68  AISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGRN 98
            ++++LA  + G+    I++++++F+E            GYVG N
Sbjct: 629 YLAQKLAEEMFGSKDSLIRIDMSEFSESFNTSRLVGAPPGYVGYN 673


>gi|297619932|ref|YP_003708037.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297378909|gb|ADI37064.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 373

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ+ AK+   I ++   +      ++  E  PKNIL  G  G GKT ++R LA    +
Sbjct: 127 IIGQEHAKKKCKIIMKYLEK-----PEIFGEWSPKNILFYGSPGTGKTMLARALASQTNS 181

Query: 80  PFIKVEVTKFTEIGYVGRNV---EQIIRDL-VDVAIN 112
               +++ K TE+  +G +V    ++I+ L  D A N
Sbjct: 182 ---NLKLIKATEL--IGEHVGDSSKVIKGLYADAAAN 213


>gi|148671243|gb|EDL03190.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_c [Mus musculus]
          Length = 359

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 170 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 225


>gi|72389132|ref|XP_844861.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358652|gb|AAX79110.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801395|gb|AAZ11302.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 887

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G + AKR+V   +    +R +    LR    P+ +LL GP G GKT I+R +A  A  
Sbjct: 570 IAGLEHAKRSVEEVIVWPLQRPEFFVGLRGP--PRGLLLFGPPGTGKTMIARAIANRAQC 627

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            F  +  +      ++G + E+++R L  VA+
Sbjct: 628 TFFNISASSVMS-KWMG-DGEKLVRCLFAVAV 657


>gi|51262008|gb|AAH80137.1| 26S protease regulatory subunit 7 [Xenopus (Silurana) tropicalis]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|88607638|ref|YP_505717.1| ATP-dependent metalloprotease FtsH [Anaplasma phagocytophilum HZ]
 gi|88598701|gb|ABD44171.1| ATP-dependent metalloprotease FtsH [Anaplasma phagocytophilum HZ]
          Length = 611

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK  LL+G  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ +
Sbjct: 190 IPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFE 244


>gi|328542274|ref|YP_004302383.1| ATPase AAA-2 domain protein [polymorphum gilvum SL003B-26A1]
 gi|326412023|gb|ADZ69086.1| ATPase AAA-2 domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 968

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ++A RAVA A+R         A LR+   P    L +GPTGVGKT +++ L
Sbjct: 616 KLHERVIGQEEAIRAVADAVR------LARAGLREGRGPTATFLFLGPTGVGKTELAKTL 669

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGRNV 99
           A +        I+++++++ E   V R V
Sbjct: 670 AEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14]
          Length = 770

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           P+ ILL GP G GKT ++  +A  +GA FI++   +    G  G + EQ +R+L   A+
Sbjct: 193 PRGILLHGPPGTGKTMLANSIAGESGAAFIRISAPEIVS-GMSGES-EQKVRELFQEAV 249


>gi|304315146|ref|YP_003850293.1| ATP-dependent 26S protease, regulatory subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588605|gb|ADL58980.1| ATP-dependent 26S protease, regulatory subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ+DAK    I  R   R  + P   RD   P+N+L  G  G GKT +++ LA     
Sbjct: 128 VIGQEDAK----IKCRIIMRYLEDPDRFRD-WAPRNVLFHGSPGTGKTMLAKSLANELRV 182

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T    IG +VG    QI
Sbjct: 183 PLYLIKATSL--IGEHVGDGARQI 204


>gi|304309993|ref|YP_003809591.1| Heat shock protein F84.1 [gamma proteobacterium HdN1]
 gi|301795726|emb|CBL43925.1| Heat shock protein F84.1 [gamma proteobacterium HdN1]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVVGQHEAIVAVANAVR-RSR-----AGLSDPHRPNGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTQDALVRIDMSEFMEKHSVAR 645


>gi|261409551|ref|YP_003245792.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261286014|gb|ACX67985.1| ATPase AAA-2 domain protein [Paenibacillus sp. Y412MC10]
          Length = 818

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVSRAVR-RAR-----AGLKDPKRPMGSFIFLGPTGVGKTELARALA 559


>gi|226308209|ref|YP_002768169.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           erythropolis PR4]
 gi|226187326|dbj|BAH35430.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Rhodococcus erythropolis PR4]
          Length = 807

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL   +IGQ DA RA+A A+R R R       + D   P  + L +GPTGVGKT 
Sbjct: 502 RRLEEELHGRVIGQDDAVRAIARAVR-RSR-----TGMSDPDRPVGSFLFLGPTGVGKTE 555

Query: 69  ISRRLA 74
           +++ LA
Sbjct: 556 LAKALA 561


>gi|221503936|gb|EEE29613.1| Clp ATP-binding chain B1, putative [Toxoplasma gondii VEG]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + R L
Sbjct: 723 DLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELCRSL 776

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A L   +    +K++++++ E   + R
Sbjct: 777 AELMFDSEDAMVKIDMSEYMEKHTISR 803


>gi|242012489|ref|XP_002426965.1| 26S protease regulatory subunit 6B, putative [Pediculus humanus
           corporis]
 gi|212511194|gb|EEB14227.1| 26S protease regulatory subunit 6B, putative [Pediculus humanus
           corporis]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 173 KQEIREAVELPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 227

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 228 RVVGSEFVQ-KYLGEG-PRMVRDVFRLA 253


>gi|213510772|ref|NP_001133113.1| 26S protease regulatory subunit 7 [Salmo salar]
 gi|197631973|gb|ACH70710.1| 26S protease regulatory subunit 7 [Salmo salar]
 gi|209732288|gb|ACI67013.1| 26S protease regulatory subunit 7 [Salmo salar]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|167773595|gb|ABZ92232.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [synthetic
           construct]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|170590440|ref|XP_001899980.1| Probable 26S protease regulatory subunit 7 [Brugia malayi]
 gi|158592612|gb|EDP31210.1| Probable 26S protease regulatory subunit 7, putative [Brugia
           malayi]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|114799774|ref|YP_759360.1| ATP-dependent chaperone protein ClpB [Hyphomonas neptunium ATCC
           15444]
 gi|114739948|gb|ABI78073.1| ATP-dependent chaperone protein ClpB [Hyphomonas neptunium ATCC
           15444]
          Length = 872

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           ++GQ+DA  AV+ A+R R R     A L+D   P  + L VGPTGVGKT +++ LA    
Sbjct: 572 VVGQEDALLAVSNAVR-RAR-----AGLQDPNRPIGSFLFVGPTGVGKTELTKALAEFMF 625

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
                 +++++++F+E   V R
Sbjct: 626 DDDTAILRLDMSEFSEKHSVAR 647


>gi|157105469|ref|XP_001648882.1| hypothetical protein AaeL_AAEL014506 [Aedes aegypti]
 gi|108869006|gb|EAT33231.1| conserved hypothetical protein [Aedes aegypti]
          Length = 5189

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 52   MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
            + K ILL GP GVGKT++   LAR AG   +++ + + T++ 
Sbjct: 1644 LDKAILLEGPPGVGKTSLVENLARAAGFAIVRINLCEHTDLA 1685


>gi|41472112|gb|AAS07429.1| unknown [Homo sapiens]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 185 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 240


>gi|78066617|ref|YP_369386.1| AAA ATPase, ClpB [Burkholderia sp. 383]
 gi|77967362|gb|ABB08742.1| AAA ATPase, ClpB [Burkholderia sp. 383]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQHEAISAVADAIR-RSR-----AGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           + LA     +    I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|76879893|dbj|BAE45763.1| putative protein product of Nbla10058 [Homo sapiens]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|1176230|sp|P42811|PRS2_METTM RecName: Full=Putative 26S protease regulatory subunit homolog
           MTBMA_c13930
 gi|809719|emb|CAA58665.1| orf1 [Methanothermobacter thermautotrophicus]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ+DAK    I  R   R  + P   RD   P+N+L  G  G GKT +++ LA     
Sbjct: 129 VIGQEDAK----IKCRIIMRYLEDPDRFRD-WAPRNVLFHGSPGTGKTMLAKSLANELRV 183

Query: 80  PFIKVEVTKFTEIG-YVGRNVEQI 102
           P   ++ T    IG +VG    QI
Sbjct: 184 PLYLIKATSL--IGEHVGDGARQI 205


>gi|116668736|ref|YP_829669.1| ATPase [Arthrobacter sp. FB24]
 gi|116608845|gb|ABK01569.1| ATPase AAA-2 domain protein [Arthrobacter sp. FB24]
          Length = 830

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R  ++  EL + ++GQ +A +A++ A+R R R     A L+D   P  + +
Sbjct: 496 FKLTEEESSRLLKMEDELHKRVVGQNEAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 549

Query: 58  LVGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA  L G     I +++++++E   V R
Sbjct: 550 FAGPTGVGKTELAKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|332754018|gb|EGJ84390.1| chaperone protein clpB [Shigella flexneri K-671]
          Length = 678

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 385 QELHHRVIGQNEAVDAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 438

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 439 LANFMFDSDEAMVRIDMSEFMEKHSVSRLV 468


>gi|329929240|ref|ZP_08282999.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
           sp. HGF5]
 gi|328936799|gb|EGG33238.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
           sp. HGF5]
          Length = 818

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAVSRAVR-RAR-----AGLKDPKRPMGSFIFLGPTGVGKTELARALA 559


>gi|321478112|gb|EFX89070.1| hypothetical protein DAPPUDRAFT_233773 [Daphnia pulex]
          Length = 285

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 15/95 (15%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L +    +Q+  D      P+ +L+ GP G GKT +++ +A    A FI
Sbjct: 96  KQEMREAVKLPLTHFELYKQIGID-----PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFI 150

Query: 83  KVEVTKFTEIGYVG---------RNVEQIIRDLVD 108
           +V  ++F +  Y+G         R+V++I+ +L++
Sbjct: 151 RVVGSEFVQ-KYLGEGPRMTGADRDVQRILLELLN 184


>gi|296447416|ref|ZP_06889341.1| ATP-dependent chaperone ClpB [Methylosinus trichosporium OB3b]
 gi|296255036|gb|EFH02138.1| ATP-dependent chaperone ClpB [Methylosinus trichosporium OB3b]
          Length = 871

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R ++GQ++A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 565 ELARRVVGQKEAVAAVSTAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 618

Query: 74  A 74
           A
Sbjct: 619 A 619


>gi|289676665|ref|ZP_06497555.1| peptidase S16, ATP-dependent protease La [Pseudomonas syringae pv.
           syringae FF5]
          Length = 513

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLV 107
           +LLVGP GVGKT++ R +A   G PF ++ V       EI      Y+G    ++++ L 
Sbjct: 95  VLLVGPPGVGKTSVGRSIAESLGRPFYRLSVGGMRDEAEIKGHRRTYIGAQPGKLVQALK 154

Query: 108 DVAI 111
           DV +
Sbjct: 155 DVEV 158


>gi|213027793|ref|ZP_03342240.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 122 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 175

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 176 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 205


>gi|331268385|ref|YP_004394877.1| ATPase AAA-2 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329124935|gb|AEB74880.1| ATPase AAA-2 domain protein [Clostridium botulinum BKT015925]
          Length = 813

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A +++A A+R R R       L+D   P  + + +GPTGVGKT +S+ LA
Sbjct: 510 LHKRVIGQNEAVKSIAKAVR-RAR-----VGLKDPKRPIGSFIFLGPTGVGKTELSKALA 563

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGR 97
                     I+V+++++ E   V R
Sbjct: 564 EAMFGDENNMIRVDMSEYMEKHAVSR 589


>gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 211 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEAKK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 269 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 328

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 329 SLDPALRRGGRFDKEINLTV 348


>gi|315274644|ref|ZP_07869487.1| negative regulator of genetic competence ClpC/MecB [Listeria
          marthii FSL S4-120]
 gi|313615725|gb|EFR89010.1| negative regulator of genetic competence ClpC/MecB [Listeria
          marthii FSL S4-120]
          Length = 338

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
          L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 23 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 76


>gi|291459189|ref|ZP_06598579.1| negative regulator of genetic competence ClpC/MecB [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418443|gb|EFE92162.1| negative regulator of genetic competence ClpC/MecB [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 828

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L + ++GQ +A  AVA A++ R R       L+D   P  + + +GPTGVGKT 
Sbjct: 504 KKLEQNLHQRVVGQSEAVHAVAQAIK-RGR-----VGLKDPRRPIGSFMFLGPTGVGKTE 557

Query: 69  ISRRLARLAGAP---FIKVEVTKFTE-----------IGYVG 96
           +S+ LA L        I+V+++++ E            GYVG
Sbjct: 558 LSKALAELMFGSENDLIRVDMSEYMEKYSVSKMIGSPPGYVG 599


>gi|296082282|emb|CBI21287.3| unnamed protein product [Vitis vinifera]
          Length = 551

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 14/68 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           +PRE        IIGQ DA +A+  ALR         A +RD   P  + L  GPTGVGK
Sbjct: 281 TPRE-------SIIGQDDAVKAICRALRRDG------AGIRDPTRPIASFLFTGPTGVGK 327

Query: 67  TAISRRLA 74
           T +++ +A
Sbjct: 328 TELAKLIA 335


>gi|325982671|ref|YP_004295073.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532190|gb|ADZ26911.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 638

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK  VA     LR+  + Q+L   +     P+ +L+VG  G GKT ++R +A  
Sbjct: 157 VAGCEEAKEEVAELVEFLRDPTKFQKLGGRI-----PRGVLMVGSPGTGKTLLARAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 212 AQVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243


>gi|258568118|ref|XP_002584803.1| hypothetical protein UREG_05492 [Uncinocarpus reesii 1704]
 gi|237906249|gb|EEP80650.1| hypothetical protein UREG_05492 [Uncinocarpus reesii 1704]
          Length = 798

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 361 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 417


>gi|255542742|ref|XP_002512434.1| 26S protease regulatory subunit 6a, putative [Ricinus communis]
 gi|223548395|gb|EEF49886.1| 26S protease regulatory subunit 6a, putative [Ricinus communis]
          Length = 429

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 27/161 (16%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           Q+   A+ + + ++ R Q+L   +R    PK +LL GP G GKT ++R  A    A F+K
Sbjct: 180 QELVEAIVLPMTHKERFQKL--GIRP---PKGVLLYGPPGTGKTLMARACAAQTNATFLK 234

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-- 141
           +   +  ++ ++G    +++RD    A  + +E      +    I  +E  +DA+  K  
Sbjct: 235 LAGPQLVQM-FIGDGA-KLVRD----AFQLAKE------KSPCIIFIDE--IDAIGTKRF 280

Query: 142 -TATSNTREVFRKKLR-----DGEISDKEIDIEVADTSSDI 176
            +  S  REV R  L      DG  SD+ I +  A   +DI
Sbjct: 281 DSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADI 321


>gi|221110405|ref|XP_002154716.1| PREDICTED: similar to proteasome 26S ATPase subunit 2 [Hydra
           magnipapillata]
          Length = 431

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 206 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 261


>gi|221107178|ref|XP_002169843.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 572

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + P  ILL GP G GKT +++ +A  AG  FI V+  +   + YVG + E+ +R +   A
Sbjct: 285 VTPPGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNM-YVGES-EKAVRQVFQRA 342

Query: 111 IN 112
            N
Sbjct: 343 KN 344


>gi|146320224|ref|YP_001199935.1| ATPases with chaperone activity, ATP-binding protein [Streptococcus
           suis 98HAH33]
 gi|145691030|gb|ABP91535.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 98HAH33]
          Length = 632

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|119486634|ref|ZP_01620684.1| ATPase [Lyngbya sp. PCC 8106]
 gi|119456251|gb|EAW37383.1| ATPase [Lyngbya sp. PCC 8106]
          Length = 873

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           SEL + ++GQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ 
Sbjct: 570 SELHQRVVGQEEAVTAVAEAI------QRSRAGLGDPKRPVASFIFLGPTGVGKTELAKA 623

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA          ++++++++ E   V R
Sbjct: 624 LAAYLFDTEEAMVRIDMSEYMEKHAVSR 651


>gi|50305059|ref|XP_452488.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641621|emb|CAH01339.1| KLLA0C06534p [Kluyveromyces lactis]
          Length = 428

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L      QQ+  D      P+ +LL GP G GKT + + +A    A FI
Sbjct: 181 KQEIREAVELPLVQADLYQQIGID-----PPRGVLLYGPPGTGKTMLVKAVANATEAAFI 235

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F    Y+G    +++RD+  +A
Sbjct: 236 RVNGSEFVH-KYLGEG-PRMVRDVFRLA 261


>gi|17563248|ref|NP_506005.1| proteasome Regulatory Particle, ATPase-like family member (rpt-1)
           [Caenorhabditis elegans]
 gi|2492520|sp|Q18787|PRS7_CAEEL RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit rpt-1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|3875191|emb|CAB01414.1| C. elegans protein C52E4.4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|328769010|gb|EGF79055.1| 26S protease regulatory subunit 6 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT + + +A    A 
Sbjct: 150 IQKQEIREAVELPLTHFDLYRQIGID-----PPRGVLLYGPPGTGKTMLVKAVANHTTAS 204

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 205 FIRVNGSEFVQ-KYLGEG-PRMVRDVFRLA 232


>gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 211 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEAKK 268

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 269 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 328

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 329 SLDPALRRGGRFDKEINLTV 348


>gi|325478440|gb|EGC81554.1| negative regulator of genetic competence ClpC/MecB [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 814

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S+L   +IGQQ+A  +VA +++ R R       L+D   P  + + VGPTGVGKT +++ 
Sbjct: 493 SDLKLSVIGQQEAIDSVAKSIK-RAR-----VGLKDPKKPIGSFIFVGPTGVGKTYLAKT 546

Query: 73  LAR-LAGA--PFIKVEVTKFTEIGYVGR 97
           LA+ L G+    I+++++++ E   V R
Sbjct: 547 LAKDLFGSEDKLIRMDMSEYMEKFAVSR 574


>gi|296209885|ref|XP_002751728.1| PREDICTED: 26S protease regulatory subunit 7 [Callithrix jacchus]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|281342914|gb|EFB18498.1| hypothetical protein PANDA_018742 [Ailuropoda melanoleuca]
          Length = 397

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 173 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 228


>gi|323526162|ref|YP_004228315.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1001]
 gi|323383164|gb|ADX55255.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1001]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHERVIGQDEAINAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     +    I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|281355949|ref|ZP_06242442.1| ATP-dependent metalloprotease FtsH [Victivallis vadensis ATCC
           BAA-548]
 gi|281317318|gb|EFB01339.1| ATP-dependent metalloprotease FtsH [Victivallis vadensis ATCC
           BAA-548]
          Length = 703

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK  LL G  G GKT +++ +A  AG PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 263 IPKGCLLTGDPGTGKTMLAKAVACEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 319


>gi|262369634|ref|ZP_06062962.1| ATP-dependent protease Hsp 100 [Acinetobacter johnsonii SH046]
 gi|262315702|gb|EEY96741.1| ATP-dependent protease Hsp 100 [Acinetobacter johnsonii SH046]
          Length = 859

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L   ++GQ DA  AV+ A+R R R     A L D   P  + L +GPTGVGKT +++ LA
Sbjct: 564 LHNRVVGQDDAVVAVSNAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELTKALA 617

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    I++++++F E   V R V
Sbjct: 618 NFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|254439548|ref|ZP_05053042.1| ATPase, AAA family [Octadecabacter antarcticus 307]
 gi|198254994|gb|EDY79308.1| ATPase, AAA family [Octadecabacter antarcticus 307]
          Length = 869

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ  A R+VA A+R R R     A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 562 LHKRVIGQDTAVRSVANAVR-RAR-----AGLNDEGRPLGSFLFLGPTGVGKTELTKAVA 615

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 616 EFLFDDDNAMVRLDMSEFMEKHSVSR 641


>gi|170055071|ref|XP_001863417.1| 26S protease regulatory subunit 7 [Culex quinquefasciatus]
 gi|167875161|gb|EDS38544.1| 26S protease regulatory subunit 7 [Culex quinquefasciatus]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|50309793|ref|XP_454909.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644044|emb|CAG99996.1| KLLA0E21209p [Kluyveromyces lactis]
          Length = 432

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A    A F+K+   +  ++ Y+G    +++RD   +A
Sbjct: 213 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-KLVRDAFALA 268


>gi|91774038|ref|YP_566730.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
 gi|91713053|gb|ABE52980.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           ++GQ  A++   +  R     ++       +  P+NIL  GP+G GKT +++ LA     
Sbjct: 124 VVGQSSARQKCKLIERFLEEPEKF-----GKWAPRNILFFGPSGTGKTMLAKALANKTEV 178

Query: 80  PFIKVEVTKFTE--IGYVGRNVEQI 102
           P + ++ T+     +G   R++ Q+
Sbjct: 179 PLLPIKATQLIGEFVGEGSRHIHQL 203


>gi|83589159|ref|YP_429168.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572073|gb|ABC18625.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK--FTEIGYVGRNVEQII 103
           P +ILL GP GVGKT +S+ +A     P I +++     + +G  G+N+++I+
Sbjct: 121 PTSILLYGPPGVGKTYLSKYIAHKLSMPLIVMDLASSVSSYLGKTGQNLKKIV 173


>gi|46199425|ref|YP_005092.1| endopeptidase Clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
 gi|54035771|sp|Q72IK9|CLPB_THET2 RecName: Full=Chaperone protein ClpB
 gi|46197050|gb|AAS81465.1| endopeptidase clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
          Length = 854

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R R R     A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  ---AGAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|41055738|ref|NP_957260.1| 26S protease regulatory subunit 7 [Danio rerio]
 gi|31419198|gb|AAH53187.1| Proteasome (prosome, macropain) 26S subunit, ATPase 2 [Danio rerio]
 gi|56207862|emb|CAI20760.1| novel protein similar to vertebrate proteasome (prosome, macropain)
           26S subunit, ATPase, 2 (PSMC2) (zgc:63995) [Danio rerio]
 gi|182890060|gb|AAI65223.1| Psmc2 protein [Danio rerio]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|325690185|gb|EGD32189.1| ATP-dependent Clp protease [Streptococcus sanguinis SK115]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 548

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 549 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|323450056|gb|EGB05940.1| hypothetical protein AURANDRAFT_72112 [Aureococcus anophagefferens]
          Length = 801

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +PK  LL GP G GKT +++  A  A  PF  +  ++F E+ +VG    + +RDL
Sbjct: 341 IPKGALLCGPPGTGKTLLAKATAGEANVPFYSISGSEFVEM-FVGVGPSR-VRDL 393


>gi|298249049|ref|ZP_06972853.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
 gi|297547053|gb|EFH80920.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
          Length = 872

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ+ A +AV+ A+R R R     A L+D   P  + L +GPTGVGKT ++R LA
Sbjct: 568 LRKRVVGQEQALQAVSDAIR-RAR-----AGLQDPNRPLASFLFLGPTGVGKTELARALA 621

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     I+++++++ E   V R
Sbjct: 622 EFLFDDEHAIIRIDMSEYMERHSVAR 647


>gi|160331725|ref|XP_001712569.1| prsS8 [Hemiselmis andersenii]
 gi|159766018|gb|ABW98244.1| prsS8 [Hemiselmis andersenii]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A  +G  FI++  ++  +  Y+G    +++R++  +A
Sbjct: 182 PKGVLLYGPPGTGKTLLARAVAHHSGCTFIRMSGSELVQ-KYIGEG-SRMVREIFLMA 237


>gi|148671241|gb|EDL03188.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_a [Mus musculus]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 170 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 225


>gi|119476168|ref|ZP_01616520.1| ATP-binding protease component ClpA [marine gamma proteobacterium
           HTCC2143]
 gi|119450795|gb|EAW32029.1| ATP-binding protease component ClpA [marine gamma proteobacterium
           HTCC2143]
          Length = 759

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S +++   L   + GQ  A   +A A++    R  L A    E    + LL GPTGVGKT
Sbjct: 453 SLKKLEDNLKMVVFGQDKAISTLATAIK--MARAGLKAV---EKPIGSFLLAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++ +LA++ G   I+ +++++ E   V R
Sbjct: 508 EVTNQLAKILGLELIRFDMSEYMERHTVSR 537


>gi|57525333|ref|NP_001006225.1| 26S protease regulatory subunit 7 [Gallus gallus]
 gi|327273622|ref|XP_003221579.1| PREDICTED: 26S protease regulatory subunit 7-like [Anolis
           carolinensis]
 gi|53127484|emb|CAG31125.1| hypothetical protein RCJMB04_2j13 [Gallus gallus]
 gi|197129090|gb|ACH45588.1| putative 26S protease regulatory subunit 7 [Taeniopygia guttata]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|47228098|emb|CAF97727.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 689

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q++ A       PK  +L GP G GKT +++  A  A  PFI V  ++F E+ 
Sbjct: 224 LKNPKQYQEMGAKF-----PKGAILTGPPGTGKTLLAKATAGEANVPFISVNGSEFLEM- 277

Query: 94  YVGRNVEQIIRDLVDVA 110
           + G    + +RDL   A
Sbjct: 278 FAGVGPAR-VRDLFRTA 293


>gi|45361037|ref|NP_989155.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Xenopus
           (Silurana) tropicalis]
 gi|147901369|ref|NP_001084136.1| 26S protease regulatory subunit 7 [Xenopus laevis]
 gi|1172640|sp|P46472|PRS7_XENLA RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1; Short=xMSS1
 gi|695772|emb|CAA56438.1| xMSS1 [Xenopus laevis]
 gi|32450021|gb|AAH54143.1| XMSS1 protein [Xenopus laevis]
 gi|38494277|gb|AAH61627.1| 26S protease regulatory subunit 7 [Xenopus (Silurana) tropicalis]
 gi|89267871|emb|CAJ83029.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Xenopus
           (Silurana) tropicalis]
 gi|163916327|gb|AAI57415.1| XMSS1 protein [Xenopus laevis]
 gi|1095500|prf||2109230A MSS1-like protein
          Length = 433

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|158312094|ref|YP_001504602.1| ATPase [Frankia sp. EAN1pec]
 gi|158107499|gb|ABW09696.1| ATPase AAA-2 domain protein [Frankia sp. EAN1pec]
          Length = 870

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL R +IGQ +A R VA A+R R R     A + D   P  + L +GPTGVGKT +++ 
Sbjct: 570 TELHRRVIGQDEAVRTVADAVR-RAR-----AGIADPDRPTGSFLFLGPTGVGKTELAKA 623

Query: 73  LA 74
           LA
Sbjct: 624 LA 625


>gi|326429223|gb|EGD74793.1| hypothetical protein PTSG_07026 [Salpingoeca sp. ATCC 50818]
          Length = 8642

 Score = 40.0 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 7    FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVG 65
            F+ R+ V+EL R      DA++A++       R   L  D+   L   +++++ GPT  G
Sbjct: 3320 FARRQTVAELPR-----NDARQAISSEFVLTPRHALLLQDMALVLQAHRSLIVCGPTACG 3374

Query: 66   KTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            KT + R  A+   AP +++ + +  E+G V
Sbjct: 3375 KTQLLRWFAKAVNAPMVELHMKRAVELGDV 3404


>gi|324990655|gb|EGC22591.1| ATP-dependent Clp protease [Streptococcus sanguinis SK353]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L  ++IGQ DA   +A A+R    R  L +  R    P  + L VGPTGVGKT +S
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIR--RNRVGLGSPNR----PIGSFLFVGPTGVGKTELS 497

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+  
Sbjct: 498 KQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERVR 549

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   V K A  +   +F + L DG ++D +
Sbjct: 550 RNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|253751245|ref|YP_003024386.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
           SC84]
 gi|253753146|ref|YP_003026286.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
           P1/7]
 gi|251815534|emb|CAZ51116.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus suis SC84]
 gi|251819391|emb|CAR44823.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus suis P1/7]
 gi|292557812|gb|ADE30813.1| AAA ATPase, central region [Streptococcus suis GZ1]
 gi|319757522|gb|ADV69464.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus suis JS14]
          Length = 699

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|237750928|ref|ZP_04581408.1| ATP-dependent Clp protease ClpB [Helicobacter bilis ATCC 43879]
 gi|229373373|gb|EEO23764.1| ATP-dependent Clp protease ClpB [Helicobacter bilis ATCC 43879]
          Length = 763

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96
           + L  GP+GVGKT +S+ LA++ G  F +++++++ E            GYVG
Sbjct: 504 SFLFTGPSGVGKTELSKELAKILGIKFERIDMSEYAESHSISKLIGSPAGYVG 556


>gi|226303980|ref|YP_002763938.1| ATPase [Rhodococcus erythropolis PR4]
 gi|226183095|dbj|BAH31199.1| putative ATPase [Rhodococcus erythropolis PR4]
          Length = 346

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 11/71 (15%)

Query: 7  FSPREIVSELDRYIIGQQDAKRAV--AIALRNRWRRQQLPADLRDELMP-KNILLVGPTG 63
          F  R++   L   I+GQQ A  AV  AI++ +            D   P  NILLVGPTG
Sbjct: 26 FDARKLSKALSSKIVGQQAAVDAVVRAISIAH--------VGATDPTRPLANILLVGPTG 77

Query: 64 VGKTAISRRLA 74
          VGKT + RR+A
Sbjct: 78 VGKTELVRRVA 88


>gi|254516624|ref|ZP_05128683.1| metalloprotease (cell division protein) FtsH [gamma proteobacterium
           NOR5-3]
 gi|219675047|gb|EED31414.1| metalloprotease (cell division protein) FtsH [gamma proteobacterium
           NOR5-3]
          Length = 640

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VG  G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 186 IPRGVLMVGQPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 242


>gi|213403322|ref|XP_002172433.1| AFG3-like protein [Schizosaccharomyces japonicus yFS275]
 gi|212000480|gb|EEB06140.1| AFG3-like protein [Schizosaccharomyces japonicus yFS275]
          Length = 747

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  A  PF  V  ++F E+ +VG    + +RDL  VA
Sbjct: 321 IPRGAILSGPPGTGKTLLAKATAGEASVPFFSVSGSEFLEM-FVGVGPSR-VRDLFAVA 377


>gi|171317872|ref|ZP_02907049.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MEX-5]
 gi|171096941|gb|EDT41811.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MEX-5]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQHEAISAVADAIR-RSR-----AGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           + LA     +    I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|90417179|ref|ZP_01225106.1| ClpB protein [marine gamma proteobacterium HTCC2207]
 gi|90330955|gb|EAS46216.1| ClpB protein [marine gamma proteobacterium HTCC2207]
          Length = 855

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 565 LHRRVMGQSEAVVAVSNAVR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKSLA 618

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    +++++++F E   V R
Sbjct: 619 EFLFDSEEAMVRIDMSEFMEKHSVAR 644


>gi|88705678|ref|ZP_01103388.1| cell division protein FtsH [Congregibacter litoralis KT71]
 gi|88700191|gb|EAQ97300.1| cell division protein FtsH [Congregibacter litoralis KT71]
          Length = 644

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+VG  G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ D A
Sbjct: 189 IPRGVLMVGQPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 245


>gi|319957024|ref|YP_004168287.1| adenosinetriphosphatase [Nitratifractor salsuginis DSM 16511]
 gi|319419428|gb|ADV46538.1| Adenosinetriphosphatase [Nitratifractor salsuginis DSM 16511]
          Length = 551

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP GVGKT +++ +A  A  PF         EI YVG
Sbjct: 185 LPKGVLLAGPPGVGKTLMAKAVAGEAKVPFFYQSGANIVEI-YVG 228


>gi|295098327|emb|CBK87417.1| tRNA isopentenyltransferase (miaA) [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQI 102
           D+    +PK I L+GPT  GKTA++  L ++     I V+   + +  +IG    N +++
Sbjct: 3   DVSKASLPKAIFLMGPTASGKTALAIELRKVLPVELISVDSALIYRGMDIGTAKPNADEL 62

Query: 103 ------IRDLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
                 + D++D A      + RRD + E A I A  RI   LVG T
Sbjct: 63  RAAPHRLLDILDPAQAYSAADFRRDALAEMAEITAAGRI-PLLVGGT 108


>gi|254701911|ref|ZP_05163739.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella suis
           bv. 5 str. 513]
 gi|261752475|ref|ZP_05996184.1| ATP-dependent Clp protease [Brucella suis bv. 5 str. 513]
 gi|261742228|gb|EEY30154.1| ATP-dependent Clp protease [Brucella suis bv. 5 str. 513]
          Length = 651

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++++
Sbjct: 466 AELKRVVYGQDLAIDALSASIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVAKQ 519

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 520 LASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572


>gi|260946049|ref|XP_002617322.1| hypothetical protein CLUG_02766 [Clavispora lusitaniae ATCC 42720]
 gi|238849176|gb|EEQ38640.1| hypothetical protein CLUG_02766 [Clavispora lusitaniae ATCC 42720]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L ++++GQ +A  AV+ A+R   +R  L +D R    P  + + +GPTG GKT ++++LA
Sbjct: 497 LKQHVVGQDEAIHAVSDAVR--LQRAGLTSDKR----PIASFMFLGPTGTGKTELTKQLA 550

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  I+ ++++F E   V R
Sbjct: 551 EFLFNDTSSVIRFDMSEFQEKHTVSR 576


>gi|254572015|ref|XP_002493117.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238032915|emb|CAY70938.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|328352865|emb|CCA39263.1| 26S protease regulatory subunit 6B homolog [Pichia pastoris CBS
           7435]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      +Q+  D      P+ +LL GP G GKT + + +A  + A 
Sbjct: 163 IQKQEIREAVELPLTQSDLYKQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSSTAS 217

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 218 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 245


>gi|228476803|ref|ZP_04061451.1| cell division protein FtsH [Streptococcus salivarius SK126]
 gi|228251540|gb|EEK10677.1| cell division protein FtsH [Streptococcus salivarius SK126]
          Length = 659

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 216 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 259


>gi|255082568|ref|XP_002504270.1| ATP-dependent clp protease [Micromonas sp. RCC299]
 gi|226519538|gb|ACO65528.1| ATP-dependent clp protease [Micromonas sp. RCC299]
          Length = 1033

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ++A  AV+ +LR R R       L+D   P  ++L  GPTGVGKT +++RL
Sbjct: 646 DLQGSVIGQEEAVSAVSRSLR-RTR-----CGLKDPNRPIASMLFAGPTGVGKTELTKRL 699

Query: 74  A 74
           A
Sbjct: 700 A 700


>gi|222151041|ref|YP_002560195.1| ATP-dependent protease ATP-binding subunit ClpL [Macrococcus
           caseolyticus JCSC5402]
 gi|222120164|dbj|BAH17499.1| ATP-dependent protease ATP-binding subunit ClpL [Macrococcus
           caseolyticus JCSC5402]
          Length = 683

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 23/103 (22%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           + + S L   +IGQ +A +AVA A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 395 KHMQSRLASKVIGQDEAVQAVAKAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 447

Query: 68  AISRRLA-RLAGA--PFIKVEVTKF-----------TEIGYVG 96
            ++++L+  L G     I+++++++           T  GYVG
Sbjct: 448 ELAKQLSLELFGTTESMIRLDMSEYMDQTAVSKMIGTTAGYVG 490


>gi|188582953|ref|YP_001926398.1| hypothetical protein Mpop_3719 [Methylobacterium populi BJ001]
 gi|179346451|gb|ACB81863.1| hypothetical protein Mpop_3719 [Methylobacterium populi BJ001]
          Length = 449

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           + +LL GP GVGKT+ +R LA+ A  P +   V ++    Y+   ++ I
Sbjct: 321 RGLLLSGPPGVGKTSFARALAKSARVPLVATSVAEWNAADYLSGTLQAI 369


>gi|157148104|ref|YP_001455423.1| protein disaggregation chaperone [Citrobacter koseri ATCC BAA-895]
 gi|157085309|gb|ABV14987.1| hypothetical protein CKO_03914 [Citrobacter koseri ATCC BAA-895]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|149375703|ref|ZP_01893472.1| chaperone-associated ATPase, putative [Marinobacter algicola
          DG893]
 gi|149360105|gb|EDM48560.1| chaperone-associated ATPase, putative [Marinobacter algicola
          DG893]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 5  FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTG 63
          F F P  ++S L   I+GQ DA  A+   L       ++ AD+ +E  P  + L +GPTG
Sbjct: 30 FRFEPDAVMSRLRESIVGQDDALTAMESML------VRVKADIGEENRPLAVHLFLGPTG 83

Query: 64 VGKTAISRRLA 74
          VGKT   R +A
Sbjct: 84 VGKTETVRLIA 94


>gi|33859604|ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]
 gi|26345730|dbj|BAC36516.1| unnamed protein product [Mus musculus]
          Length = 475

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 251 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 306


>gi|327458751|gb|EGF05099.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1057]
          Length = 756

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L  ++IGQ DA   +A A+R    R  L +  R    P  + L VGPTGVGKT +S
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIR--RNRVGLGSPNR----PIGSFLFVGPTGVGKTELS 497

Query: 71  RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           ++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+  
Sbjct: 498 KQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERVR 549

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            N    IL   V K A  +   +F + L DG ++D +
Sbjct: 550 RNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 585


>gi|323223751|gb|EGA08056.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 122 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 175

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 176 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 205


>gi|321476874|gb|EFX87834.1| hypothetical protein DAPPUDRAFT_306359 [Daphnia pulex]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|308503911|ref|XP_003114139.1| CRE-RPT-1 protein [Caenorhabditis remanei]
 gi|308261524|gb|EFP05477.1| CRE-RPT-1 protein [Caenorhabditis remanei]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|260831900|ref|XP_002610896.1| hypothetical protein BRAFLDRAFT_126283 [Branchiostoma floridae]
 gi|229296265|gb|EEN66906.1| hypothetical protein BRAFLDRAFT_126283 [Branchiostoma floridae]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|195375722|ref|XP_002046649.1| GJ12996 [Drosophila virilis]
 gi|194153807|gb|EDW68991.1| GJ12996 [Drosophila virilis]
          Length = 933

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 51  LMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           L+P + +LL GP G GKT ++R +A     P ++V  T+   IG +    E+ IRD+ + 
Sbjct: 281 LLPSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATEL--IGGISGESEERIRDVFEQ 338

Query: 110 AI-NIVRESRRDEV------REQASINAEERILDALV 139
           AI N       DE+      R+ AS + E RI+  L+
Sbjct: 339 AIDNSPCVLFIDEIDAIAGNRQWASKDMERRIVSQLI 375


>gi|76803147|ref|YP_331242.1| proteasome-activating nucleotidase [Natronomonas pharaonis DSM
           2160]
 gi|76559012|emb|CAI50610.1| proteasome-activating nucleotidase 1 [Natronomonas pharaonis DSM
           2160]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ +A    A FIK+  ++  +  ++G    +++RDL ++A  
Sbjct: 185 PTGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVQ-KFIGEGA-RLVRDLFELAAE 242

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNT 147
                     RE A I  +E  +DA+  K   S T
Sbjct: 243 ----------REPAIIFIDE--IDAIAAKRTESKT 265


>gi|323497828|ref|ZP_08102842.1| hypothetical protein VISI1226_18161 [Vibrio sinaloensis DSM 21326]
 gi|323317175|gb|EGA70172.1| hypothetical protein VISI1226_18161 [Vibrio sinaloensis DSM 21326]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A   VA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQTEAVEVVANAIR-RSR-----AGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|269926455|ref|YP_003323078.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790115|gb|ACZ42256.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 820

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + I+GQ +A   VA A+R R R       ++D   P  + + +GPTGVGKT +++ L
Sbjct: 508 ELHKRIVGQDEAITTVARAVR-RAR-----TGMKDPRRPVGSFIFLGPTGVGKTELAKTL 561

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    IK+++++F E   V R V
Sbjct: 562 AEFMFGSEDALIKIDMSEFMERHAVARLV 590


>gi|161502241|ref|YP_001569353.1| protein disaggregation chaperone [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863588|gb|ABX20211.1| hypothetical protein SARI_00266 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 861

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 568 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 621

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 622 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|55981456|ref|YP_144753.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
 gi|66774200|sp|Q9RA63|CLPB_THET8 RecName: Full=Chaperone protein ClpB
 gi|55772869|dbj|BAD71310.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
          Length = 854

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R R R     A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  ---AGAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|268557298|ref|XP_002636638.1| C. briggsae CBR-RPT-1 protein [Caenorhabditis briggsae]
 gi|187021089|emb|CAP39671.1| CBR-RPT-1 protein [Caenorhabditis briggsae AF16]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|332019605|gb|EGI60083.1| 26S protease regulatory subunit 7 [Acromyrmex echinatior]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|332158045|ref|YP_004423324.1| TBP-interacting protein TIP49 [Pyrococcus sp. NA2]
 gi|331033508|gb|AEC51320.1| TBP-interacting protein TIP49 [Pyrococcus sp. NA2]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG- 78
          ++GQ  A+ A  IA++            + +L  K ILLVGPTG GKTAI+  +A+  G 
Sbjct: 39 MVGQIKAREAAGIAVK---------LIKQGKLAGKGILLVGPTGSGKTAIAMGIAKELGE 89

Query: 79 -APFIKV 84
            PF+++
Sbjct: 90 DVPFVQI 96


>gi|322799608|gb|EFZ20880.1| hypothetical protein SINV_01171 [Solenopsis invicta]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|312072869|ref|XP_003139262.1| hypothetical protein LOAG_03677 [Loa loa]
 gi|307765567|gb|EFO24801.1| hypothetical protein LOAG_03677 [Loa loa]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|307215510|gb|EFN90162.1| ATPase family AAA domain-containing protein 1-B [Harpegnathos
           saltator]
          Length = 535

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           R++L  D +    PK ILL GP G GKT I++  A+     FI ++V+  T+  Y
Sbjct: 278 RKELFEDSQLMQAPKGILLHGPPGCGKTMIAKATAKETKTCFINLDVSILTDKWY 332


>gi|307197198|gb|EFN78520.1| 26S protease regulatory subunit 7 [Harpegnathos saltator]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|299139650|ref|ZP_07032823.1| ATPase AAA-2 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298598274|gb|EFI54439.1| ATPase AAA-2 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 914

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 6/59 (10%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           L   + GQ +A RAV+ A R R R      DL+ +  P + L VGPTGVGKT +++ LA
Sbjct: 588 LGERVYGQPEAIRAVSEAAR-RMR-----TDLQLKRSPASFLFVGPTGVGKTELAKALA 640


>gi|290981028|ref|XP_002673233.1| predicted protein [Naegleria gruberi]
 gi|284086815|gb|EFC40489.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A FI+V  ++  +  YVG    +++R+L  +A
Sbjct: 218 PKGVLLYGPPGTGKTLLARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFQMA 273


>gi|225714250|gb|ACO12971.1| 26S protease regulatory subunit 7 [Lepeophtheirus salmonis]
          Length = 435

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|225707392|gb|ACO09542.1| 26S protease regulatory subunit 7 [Osmerus mordax]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|119897857|ref|YP_933070.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Azoarcus sp.
           BH72]
 gi|119670270|emb|CAL94183.1| probable ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Azoarcus sp. BH72]
          Length = 860

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           ++GQ +A R V+ A+R R R     A L DE  P  + L +GPTGVGKT + + LA    
Sbjct: 572 VVGQDEAVRLVSDAIR-RSR-----AGLADENRPYGSFLFLGPTGVGKTELCKTLAEFLF 625

Query: 77  -AGAPFIKVEVTKFTEIGYVGR 97
            +    I++++++F E   V R
Sbjct: 626 DSEEHLIRIDMSEFMEKHSVAR 647


>gi|49118966|gb|AAH73566.1| LOC443667 protein [Xenopus laevis]
          Length = 769

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG    + +RD+  +A
Sbjct: 313 IPRGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPAR-VRDMFAMA 369


>gi|71911053|ref|YP_282603.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS5005]
 gi|71853835|gb|AAZ51858.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS5005]
          Length = 760

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      +      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYIGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|332661901|ref|YP_004451370.1| serine/threonine protein kinase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332337398|gb|AEE54497.1| serine/threonine protein kinase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 604

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P  +LL GP G GKT  + + A  AG  FIK+  +    I YV  + E+I +       
Sbjct: 362 LPNGMLLYGPPGCGKTFFAEKFAEEAGYNFIKIVSSDLASI-YVHGSQEKIGKLF----- 415

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                    E REQA        LDA+V       +RE    + + GE+++
Sbjct: 416 --------KEAREQAPTILYFDELDAMVP------SREKVNNQSQSGEVNE 452


>gi|330889672|gb|EGH22333.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 757

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 6   NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60
           N S +E++  L+R     + GQ  A  +++ A++         A L+    P  + L  G
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIKLSR------AGLKSPEKPVGSFLFAG 500

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT  +R+LA+  G   I+ +++++ E   V R
Sbjct: 501 PTGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSR 537


>gi|328773728|gb|EGF83765.1| hypothetical protein BATDEDRAFT_8849 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 718

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + ++GQ  A +AVA A+R    R  L A  R    P  + L +GPTGVGKT + + 
Sbjct: 416 TELKKSVVGQDKAIKAVADAVR--LSRAGLQAPNR----PIASFLFLGPTGVGKTELCKS 469

Query: 73  LARL 76
           LAR 
Sbjct: 470 LARF 473


>gi|325263684|ref|ZP_08130418.1| negative regulator of genetic competence ClpC/MecB [Clostridium sp.
           D5]
 gi|324031393|gb|EGB92674.1| negative regulator of genetic competence ClpC/MecB [Clostridium sp.
           D5]
          Length = 814

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 21/97 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 508 LHKRVVGQEEAVNAVARAVK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 561

Query: 75  RLAGA---PFIKVEVTKFTE-----------IGYVGR 97
                     I+V+++++ E            GYVG 
Sbjct: 562 EAMFGNEESMIRVDMSEYMEKHSVSKMIGSPPGYVGH 598


>gi|322704988|gb|EFY96577.1| matrix AAA protease MAP-1 [Metarhizium anisopliae ARSEF 23]
          Length = 905

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL
Sbjct: 446 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGPSR-VRDL 498


>gi|288801353|ref|ZP_06406807.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331736|gb|EFC70220.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           + GQ +A   V  A+          A L D+  P  ++L VGPTGVGKT ++R LA   G
Sbjct: 446 VYGQDEAVEKVVEAVHTA------KAGLIDDDKPLASLLFVGPTGVGKTEVARVLAHEMG 499

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              ++ +++++ E            GYVG     ++ D +    N V
Sbjct: 500 VELVRFDMSEYAEKHSVAKLIGAPSGYVGYEDGGLLTDAIRKTPNCV 546


>gi|254496116|ref|ZP_05109015.1| cell division protein FtsH [Legionella drancourtii LLAP12]
 gi|254354657|gb|EET13293.1| cell division protein FtsH [Legionella drancourtii LLAP12]
          Length = 600

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 148 IPRGVLLVGSPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 204


>gi|242209591|ref|XP_002470642.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730321|gb|EED84180.1| predicted protein [Postia placenta Mad-698-R]
          Length = 876

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 239 PKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 294


>gi|164663343|ref|XP_001732793.1| hypothetical protein MGL_0568 [Malassezia globosa CBS 7966]
 gi|159106696|gb|EDP45579.1| hypothetical protein MGL_0568 [Malassezia globosa CBS 7966]
          Length = 490

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 266 PKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFELA 321


>gi|158430509|pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
          Length = 262

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
          + G  +AK   R     L++  R  QL A +     PK  LL+GP G GKT +++ +A  
Sbjct: 8  VAGMHEAKLEVREFVDYLKSPERFLQLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 62

Query: 77 AGAPFIKVEVTKFTE-IGYVG 96
          A  PF+ +   +F E IG +G
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLG 83


>gi|87200837|ref|YP_498094.1| AAA ATPase, central region [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136518|gb|ABD27260.1| AAA ATPase, central region [Novosphingobium aromaticivorans DSM
           12444]
          Length = 859

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ+DA  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGKRVIGQKDAVLAVSKAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 621 GFLFDDDNAMVRIDMSEFMEKHSVSR 646


>gi|38492937|pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 gi|38492938|pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 gi|38492939|pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
 gi|5231279|dbj|BAA81745.1| ClpB [Thermus thermophilus]
 gi|8051691|dbj|BAA96085.1| ClpB [Thermus thermophilus]
          Length = 854

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R R R     A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  ---AGAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|146297060|ref|YP_001180831.1| ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410636|gb|ABP67640.1| ATPase AAA-2 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 864

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 16/99 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGP 61
           + R+ + ELD    R ++GQ +A  AV  A +R R       A ++D   P    L +GP
Sbjct: 559 TERQKILELDKILHRRVVGQNEAVEAVCNAIMRAR-------AGIKDPRKPIGTFLFLGP 611

Query: 62  TGVGKTAISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           TGVGKT ++R LA     +    I++++T++ E   V R
Sbjct: 612 TGVGKTELARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|325117727|emb|CBZ53278.1| putative 26S protease regulatory subunit 6b [Neospora caninum
           Liverpool]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           I +Q+ + AV + L      QQ+  D      P  +LL GP G GKT +++ +A    A 
Sbjct: 169 IQKQEIREAVELPLTCPELYQQIGID-----PPTGVLLYGPPGTGKTMLAKAVANNTTAT 223

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 224 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 251


>gi|320539058|ref|ZP_08038732.1| protein disaggregation chaperone [Serratia symbiotica str. Tucson]
 gi|320030898|gb|EFW12903.1| protein disaggregation chaperone [Serratia symbiotica str. Tucson]
          Length = 859

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 565 ELHSRVIGQDEAVSAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 619 ASFLFDSDEAIVRIDMSEFMEKHSVSRLV 647


>gi|309790992|ref|ZP_07685532.1| ATPase [Oscillochloris trichoides DG6]
 gi|308226965|gb|EFO80653.1| ATPase [Oscillochloris trichoides DG6]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 14/63 (22%)

Query: 55  NILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVE 100
            +L +GPTGVGKTA +R LA+L    G  F+K++ + F++       +G    YVGR+ +
Sbjct: 55  TLLFLGPTGVGKTATARALAQLVRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQK 114

Query: 101 QII 103
            ++
Sbjct: 115 PLL 117


>gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
 gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
          Length = 710

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ LAR + A FI V+  +     +G   R V +I R     A
Sbjct: 492 PKGVLLYGPPGTGKTLLAKALARESEANFISVKGPELLNRWVGESERGVREIFRKARQAA 551

Query: 111 INIV 114
             I+
Sbjct: 552 PCII 555


>gi|307172188|gb|EFN63713.1| 26S protease regulatory subunit 7 [Camponotus floridanus]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|283786204|ref|YP_003366069.1| chaperone (heat-shock protein F84.1) [Citrobacter rodentium ICC168]
 gi|282949658|emb|CBG89277.1| chaperone (heat-shock protein F84.1) [Citrobacter rodentium ICC168]
          Length = 857

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|303280511|ref|XP_003059548.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459384|gb|EEH56680.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 176 VQKQEIREAVELPLTHFDLYRQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 231 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 258


>gi|224282743|ref|ZP_03646065.1| ATPase AAA-2 domain protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310287202|ref|YP_003938460.1| ATP-dependent clp protease [Bifidobacterium bifidum S17]
 gi|311064064|ref|YP_003970789.1| genetic competence regulator ClpC [Bifidobacterium bifidum PRL2010]
 gi|309251138|gb|ADO52886.1| ATP-dependent clp protease [Bifidobacterium bifidum S17]
 gi|310866383|gb|ADP35752.1| ClpC Negative regulator of genetic competence [Bifidobacterium
           bifidum PRL2010]
          Length = 858

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RTR-----VGLKDPKRPAGSFIFAGPTGVGKTELAKA 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|242023637|ref|XP_002432238.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
 gi|212517640|gb|EEB19500.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
          Length = 426

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 202 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 257


>gi|254390081|ref|ZP_05005302.1| chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|294813489|ref|ZP_06772132.1| Chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|326442105|ref|ZP_08216839.1| putative ATP-dependent protease subunit [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703789|gb|EDY49601.1| chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|294326088|gb|EFG07731.1| Chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
          Length = 865

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R +IGQ +A RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 569 ELGRRLIGQSEAVRAVSDAVR-RTR-----AGIADPDRPTGSFLFLGPTGVGKTELAKAL 622

Query: 74  A 74
           A
Sbjct: 623 A 623


>gi|156550335|ref|XP_001603253.1| PREDICTED: similar to 26S protease regulatory subunit [Nasonia
           vitripennis]
          Length = 434

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|148684573|gb|EDL16520.1| ClpB caseinolytic peptidase B homolog (E. coli), isoform CRA_d [Mus
           musculus]
          Length = 563

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 199 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 249

Query: 73  LARL----AGAPFIKVEVTKFTE 91
            A+     A   FI++++++F E
Sbjct: 250 TAKYMHKDAKKGFIRLDMSEFQE 272


>gi|229542233|ref|ZP_04431293.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
 gi|229326653|gb|EEN92328.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
          Length = 816

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHSRVIGQEEAVLAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|160871902|ref|ZP_02062034.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rickettsiella
           grylli]
 gi|159120701|gb|EDP46039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rickettsiella
           grylli]
          Length = 770

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++R+LA L G   ++ +++++ E   V R
Sbjct: 493 SFLFAGPTGVGKTEVTRQLAELMGIELLRFDMSEYMERHSVSR 535


>gi|283436220|ref|NP_060658.3| ATPase family AAA domain-containing protein 3A isoform 1 [Homo
           sapiens]
 gi|84028405|sp|Q9NVI7|ATD3A_HUMAN RecName: Full=ATPase family AAA domain-containing protein 3A
 gi|56207195|emb|CAI22954.1| ATPase family, AAA domain containing 3A [Homo sapiens]
 gi|119576595|gb|EAW56191.1| ATPase family, AAA domain containing 3A, isoform CRA_f [Homo
           sapiens]
          Length = 634

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +AIA RN           ++  + +NIL+ GP G GKT  +++LA  +G  +    + 
Sbjct: 377 RDIAIATRN---------TKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYA---IM 424

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRR------DEVREQASINAEERILDALVGK 141
              ++  +GR     +  L D A      SRR      DE              DA + K
Sbjct: 425 TGGDVAPMGREGVTAMHKLFDWANT----SRRGLLLFVDEA-------------DAFLRK 467

Query: 142 TATSNTREVFRKKL-----RDGEISDK-----------EIDIEVADTSSDISNFDIPG 183
            AT    E  R  L     R G+ S+K           + D  + D  +++ +FD+PG
Sbjct: 468 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPG 525


>gi|217104|dbj|BAA00888.1| unnamed protein product [Synechocystis sp. PCC 6803]
 gi|243472|gb|AAC60393.1| ORF 376 [Synechocystis]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 15/101 (14%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + EL +++  + DA          R R   LP        PK +L++G  G GK+ I++ 
Sbjct: 114 LEELKKWLTQRSDA-------FTERAREYGLP-------QPKGMLILGVPGCGKSLIAKT 159

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +RL G P +++++ +  +   VGR+ E  +R+ +  A +I
Sbjct: 160 TSRLWGLPLLRLDMGRVYDGSMVGRS-EANLRNALKTAESI 199


>gi|330832216|ref|YP_004401041.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
           ST3]
 gi|329306439|gb|AEB80855.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
           ST3]
          Length = 699

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|330468567|ref|YP_004406310.1| ATPase AAA-2 domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328811538|gb|AEB45710.1| ATPase AAA-2 domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 851

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L   +IGQ DA  AVA A+R R R       L D   P  + L +GPTGVGKT ++R 
Sbjct: 531 GHLHEKVIGQDDAVNAVAEAVR-RSR-----TGLADPHRPMGSFLFLGPTGVGKTELARA 584

Query: 73  LAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99
           LA  L G     ++V++++F E   V R V
Sbjct: 585 LAEALFGEADRMVRVDMSEFQERHTVSRLV 614


>gi|323359340|ref|YP_004225736.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
 gi|323275711|dbj|BAJ75856.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 839

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 18/93 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           EL   +IGQ DA  AVA A+R NR         + DE  P  + L +GPTGVGKT +++ 
Sbjct: 533 ELHARVIGQDDAVTAVAKAVRRNRT-------GMGDENRPVGSFLFLGPTGVGKTELAK- 584

Query: 73  LARLAGAPF------IKVEVTKFTEIGYVGRNV 99
              LAG+ F      I+ ++++F E   V R V
Sbjct: 585 --ALAGSLFDDDGAVIRFDMSEFGERHTVSRLV 615


>gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
 gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
          Length = 743

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD---- 108
           P+ +LL GP G GKT I+   A   G PFI +        G  G + E+ +RD  +    
Sbjct: 211 PRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIIS-GMSGES-EKALRDHFEEARR 268

Query: 109 VAINIVRESRRDEV---REQASINAEERIL--------DALVGKT--------ATSNTRE 149
           VA  ++     D +   RE A    E+RI+        D  + KT        A +N  +
Sbjct: 269 VAPCLIFMDEIDAITPKRESAQREMEKRIVAQLLTCMDDLALAKTDGKPVIVLAATNRPD 328

Query: 150 VFRKKLRDGEISDKEIDIEV 169
                LR G   DKEI++ V
Sbjct: 329 SLDPALRRGGRFDKEINLTV 348


>gi|291234647|ref|XP_002737255.1| PREDICTED: proteasome 26S ATPase subunit 2-like [Saccoglossus
           kowalevskii]
          Length = 435

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|260892526|ref|YP_003238623.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
 gi|260864667|gb|ACX51773.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
          Length = 500

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 14/122 (11%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K ILL GP G GKT +++  A    A FI    ++F E+ Y G    Q IR+L  +A   
Sbjct: 100 KGILLTGPPGTGKTLLAKAAAGYTDAVFIAASGSEFVEM-YAGVGA-QRIRNLFRLA--- 154

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167
            RE  +   + +A I  +E  +D L GK    N+   + + L       DG   D++++I
Sbjct: 155 -REKAQQSGKNRAIIFIDE--IDVLGGKRGKVNSHLEYDQTLNQLLVEMDGIKGDEKVNI 211

Query: 168 EV 169
            V
Sbjct: 212 LV 213


>gi|194477006|ref|YP_002049185.1| cell division protein ftsH [Paulinella chromatophora]
 gi|171192013|gb|ACB42975.1| cell division protein ftsH [Paulinella chromatophora]
          Length = 615

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 191 IPKGILLAGSPGTGKTLLAKAVAGEARVPFFSIAGSEFVEM-FVGVGASR-VRDLFEQA 247


>gi|332211401|ref|XP_003254808.1| PREDICTED: caseinolytic peptidase B protein homolog isoform 2
           [Nomascus leucogenys]
          Length = 561

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 27/100 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 197 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 247

Query: 73  LARL----AGAPFIKVEVTKFTE-----------IGYVGR 97
            A+     A   FI++++++F E            GYVG 
Sbjct: 248 TAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGH 287


>gi|332187979|ref|ZP_08389711.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
 gi|332011980|gb|EGI54053.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
          Length = 869

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQ+ A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ LA
Sbjct: 567 LGRRVIGQRQAVTAVSRAIR-RAR-----AGLQDPDRPMGSFLFLGPTGVGKTELTKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 621 GFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|326328759|ref|ZP_08195095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Nocardioidaceae bacterium Broad-1]
 gi|325953381|gb|EGD45385.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Nocardioidaceae bacterium Broad-1]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +A++ A+R R R     A L+D   P  + +  GP+GVGKT +S+ L
Sbjct: 517 ELHKRVIGQDEAVKALSRAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTWLSKTL 570

Query: 74  ARLAGA---PFIKVEVTKFTEIGYVGR 97
           A          I++++++F E   V R
Sbjct: 571 AEFLFGDEDALIQLDMSEFGEKHTVSR 597


>gi|322515780|ref|ZP_08068725.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
 gi|322125742|gb|EFX97060.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 216 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 259


>gi|308234744|ref|ZP_07665481.1| ATP-dependent chaperone protein ClpB [Gardnerella vaginalis ATCC
           14018]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A RA+A A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 129 ELSKRVVGQSEAIRAIADAVR-RSR-----AGIADPNRPTGSFLFLGPTGVGKTELAKAL 182

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          ++++++++ E   V R
Sbjct: 183 ADFLFDDERAMVRIDMSEYMEKASVSR 209


>gi|238027045|ref|YP_002911276.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           glumae BGR1]
 gi|237876239|gb|ACR28572.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           glumae BGR1]
          Length = 865

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   +IGQ++A  AVA A+R R R     A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVIGQEEAIDAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEVC 621

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           + LA     +    I++++++F E   V R
Sbjct: 622 KALAGFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|145350327|ref|XP_001419562.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579794|gb|ABO97855.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           + +Q+ + AV + L +    +Q+  D      P+ +LL GP G GKT +++ +A    A 
Sbjct: 171 VQKQEIREAVELPLTHFDLYRQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 225

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 226 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 253


>gi|113969363|ref|YP_733156.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
 gi|113884047|gb|ABI38099.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|19113597|ref|NP_596805.1| 19S proteasome regulatory subunit Rpt1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|24638136|sp|O42931|PRS7_SCHPO RecName: Full=26S protease regulatory subunit 7 homolog
 gi|6681706|emb|CAA16915.2| 19S proteasome regulatory subunit Rpt1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK I+L GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 213 PKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 268


>gi|114046590|ref|YP_737140.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
 gi|113888032|gb|ABI42083.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|116626986|ref|YP_819605.1| cell division protein [Streptococcus thermophilus LMD-9]
 gi|116100263|gb|ABJ65409.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Streptococcus thermophilus LMD-9]
          Length = 655

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 216 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 259


>gi|85080134|ref|XP_956487.1| hypothetical protein NCU01809 [Neurospora crassa OR74A]
 gi|18376102|emb|CAD21168.1| related to nuclear VCP-like protein [Neurospora crassa]
 gi|28917553|gb|EAA27251.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 884

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LL GP+G GKT ++  +A   GA FI V       +G      E+ IRD+ D AI + 
Sbjct: 258 GVLLHGPSGCGKTTLAHAVAGSVGAAFIPVSAPSI--VGGTSGESEKNIRDVFDEAIRLA 315


>gi|322373965|ref|ZP_08048499.1| cell division protein FtsH [Streptococcus sp. C150]
 gi|321276931|gb|EFX54002.1| cell division protein FtsH [Streptococcus sp. C150]
          Length = 651

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 207 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 250


>gi|320354684|ref|YP_004196023.1| ATP-dependent chaperone ClpB [Desulfobulbus propionicus DSM 2032]
 gi|320123186|gb|ADW18732.1| ATP-dependent chaperone ClpB [Desulfobulbus propionicus DSM 2032]
          Length = 863

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           +IGQ++A  AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA    
Sbjct: 575 VIGQREAIVAVANAVR-RAR-----AGLQDPDRPLGSFIFLGPTGVGKTELARSLAEFLF 628

Query: 77  -AGAPFIKVEVTKFTEIGYVGR 97
            +    I+++++++ E   V R
Sbjct: 629 DSEQAMIRIDMSEYMEKHSVAR 650


>gi|313237162|emb|CBY12382.1| unnamed protein product [Oikopleura dioica]
          Length = 2309

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 48   RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
            R  L+P+ ILL G  GVGKT+I   LA + G P  ++ +++ T++
Sbjct: 1527 RAMLLPRPILLEGSPGVGKTSIVASLAAMCGYPVTRINLSEQTDV 1571


>gi|312277431|gb|ADQ62088.1| ATP-dependent metalloprotease FtsH [Streptococcus thermophilus
           ND03]
          Length = 637

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 198 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 241


>gi|302909371|ref|XP_003050058.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730995|gb|EEU44345.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 891

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL     
Sbjct: 440 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGPSR-VRDLFAEGR 497

Query: 111 -----------INIVRESRRDEVREQASINAEERILDALVGKTATSNTRE 149
                      I+ +  +R++  R     +  E  L+ ++ +    NTRE
Sbjct: 498 KNAPCIIFIDEIDAIGRARQESGRGFGGNDEREATLNQILTEMDGFNTRE 547


>gi|254493514|ref|ZP_05106685.1| ClpB protein [Neisseria gonorrhoeae 1291]
 gi|226512554|gb|EEH61899.1| ClpB protein [Neisseria gonorrhoeae 1291]
          Length = 859

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 570 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 624 GFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|213424878|ref|ZP_03357628.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 798

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 505 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 558

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 559 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 588


>gi|193695148|ref|XP_001948503.1| PREDICTED: 26S protease regulatory subunit 7-like [Acyrthosiphon
           pisum]
          Length = 437

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 213 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 268


>gi|149909286|ref|ZP_01897942.1| ATP-dependent Zn protease [Moritella sp. PE36]
 gi|149807603|gb|EDM67551.1| ATP-dependent Zn protease [Moritella sp. PE36]
          Length = 645

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  VA     L++  R Q+L   +     P  ILLVG  G GKT +++ +A  
Sbjct: 154 VAGCDEAKEEVAELVDYLKDPSRFQKLGGKI-----PTGILLVGSPGTGKTLLAKAIAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240


>gi|21749446|dbj|BAC03595.1| unnamed protein product [Homo sapiens]
          Length = 634

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +AIA RN           ++  + +NIL+ GP G GKT  +++LA  +G  +    + 
Sbjct: 377 RDIAIATRN---------TKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYA---IM 424

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRR------DEVREQASINAEERILDALVGK 141
              ++  +GR     +  L D A      SRR      DE              DA + K
Sbjct: 425 TGGDVAPMGREGVTAMHKLFDWANT----SRRGLLLFVDEA-------------DAFLRK 467

Query: 142 TATSNTREVFRKKL-----RDGEISDK-----------EIDIEVADTSSDISNFDIPG 183
            AT    E  R  L     R G+ S+K           + D  + D  +++ +FD+PG
Sbjct: 468 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPG 525


>gi|55820115|ref|YP_138557.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55822005|ref|YP_140446.1| cell division protein [Streptococcus thermophilus CNRZ1066]
 gi|55736100|gb|AAV59742.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55737990|gb|AAV61631.1| cell division protein [Streptococcus thermophilus CNRZ1066]
          Length = 655

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 216 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 259


>gi|307352742|ref|YP_003893793.1| AAA ATPase central domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155975|gb|ADN35355.1| AAA ATPase central domain protein [Methanoplanus petrolearius DSM
           11571]
          Length = 427

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 8   SPREIVSELDRYIIG--QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           SP EI   LD  +    Q++  + + IAL+NR   ++     R       +L VGP G G
Sbjct: 172 SPEEIEYSLDDLVCTPKQEEGIKKIEIALKNREFLKE-----RRIFEFGKLLFVGPPGTG 226

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           KT+++  +++    P ++V +   T   +G   +N+++I 
Sbjct: 227 KTSLALAMSKALKMPLLEVRLAMVTSQYLGETSKNIDRIF 266


>gi|302814603|ref|XP_002988985.1| hypothetical protein SELMODRAFT_159833 [Selaginella moellendorffii]
 gi|300143322|gb|EFJ10014.1| hypothetical protein SELMODRAFT_159833 [Selaginella moellendorffii]
          Length = 885

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 561 ELHKRVVGQEPAVQAVADAI------QRSRAGLSDPNRPIASFMFMGPTGVGKTELAKAL 614

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I+++++++ E   V R
Sbjct: 615 AAYLFNTEEALIRIDMSEYMEKHTVSR 641


>gi|270158119|ref|ZP_06186776.1| cell division protease FtsH [Legionella longbeachae D-4968]
 gi|289163616|ref|YP_003453754.1| Cell division protease ftsH [Legionella longbeachae NSW150]
 gi|269990144|gb|EEZ96398.1| cell division protease FtsH [Legionella longbeachae D-4968]
 gi|288856789|emb|CBJ10600.1| Cell division protease ftsH [Legionella longbeachae NSW150]
          Length = 641

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGSPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|254577819|ref|XP_002494896.1| ZYRO0A12342p [Zygosaccharomyces rouxii]
 gi|238937785|emb|CAR25963.1| ZYRO0A12342p [Zygosaccharomyces rouxii]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           P  +LL GP G GKT +++ LA  +GA FI + +++  +  Y
Sbjct: 126 PSGVLLHGPPGCGKTMLAKALAHESGANFISIRMSQIMDKWY 167


>gi|227485618|ref|ZP_03915934.1| ABC superfamily ATP binding cassette transporter ATPase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227236372|gb|EEI86387.1| ABC superfamily ATP binding cassette transporter ATPase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 814

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77
           +IGQ +A ++VA A++ R R       L+D   P  + + VGPTGVGKT +++ LA+ L 
Sbjct: 499 VIGQNEAIKSVAHAIK-RAR-----VGLKDPKKPIGSFIFVGPTGVGKTYLAKSLAKSLF 552

Query: 78  GAP--FIKVEVTKFTEIGYVGRNV 99
           G+    I+++++++ E   V R V
Sbjct: 553 GSEDRLIRMDMSEYMEKFAVSRMV 576


>gi|119603739|gb|EAW83333.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2, isoform
           CRA_c [Homo sapiens]
          Length = 271

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 47  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 102


>gi|114569836|ref|YP_756516.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Maricaulis
           maris MCS10]
 gi|114340298|gb|ABI65578.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Maricaulis
           maris MCS10]
          Length = 770

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 18/119 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGK 66
           S R + +EL   + GQ +A   ++ A++         A LR+   P    L  GPTGVGK
Sbjct: 451 SLRNLETELKHVVFGQDEAISQLSTAIKLSR------AGLREPNKPIGCYLFSGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           T ++++LA   G    + +++++ E            GYVG +   ++ D +D   + V
Sbjct: 505 TEVTKQLADTMGVELQRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDGIDQHPHCV 563


>gi|90022365|ref|YP_528192.1| membrane protease FtsH catalytic subunit [Saccharophagus degradans
           2-40]
 gi|89951965|gb|ABD81980.1| membrane protease FtsH catalytic subunit [Saccharophagus degradans
           2-40]
          Length = 641

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +L+ GP G GKT +++ +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPRGVLMSGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|33151758|ref|NP_873111.1| ATP-dependant Clp protease chain B [Haemophilus ducreyi 35000HP]
 gi|54035812|sp|Q7VNH1|CLPB_HAEDU RecName: Full=Chaperone protein ClpB
 gi|33147979|gb|AAP95500.1| ATP-dependant Clp protease chain B [Haemophilus ducreyi 35000HP]
          Length = 856

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 16  LDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           L   +IGQ +A  AVA A LR+R       A L D   P  + L +GPTGVGKT +S+ L
Sbjct: 566 LHSRVIGQNEAVEAVANAILRSR-------AGLADPNKPIGSFLFLGPTGVGKTELSKTL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++F E   V R V
Sbjct: 619 ANFLFDDENAIVRIDMSEFMEKHSVSRLV 647


>gi|154245846|ref|YP_001416804.1| ATPase [Xanthobacter autotrophicus Py2]
 gi|154159931|gb|ABS67147.1| ATPase AAA-2 domain protein [Xanthobacter autotrophicus Py2]
          Length = 879

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 565 ELAKRVVGQSEAVAAVSTAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          ++++++++ E   V R
Sbjct: 619 AEFLFDDETAMVRIDMSEYMEKHSVSR 645


>gi|119025591|ref|YP_909436.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765175|dbj|BAF39354.1| probable ATP-dependent Clp protease ATP-binding subunit
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 864

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPAGSFIFAGPTGVGKTELAKA 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|114566784|ref|YP_753938.1| vesicle-fusing ATPase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337719|gb|ABI68567.1| Vesicle-fusing ATPase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 493

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRD 105
           K ILLVGP G GKT ++R  A    + FI    ++F E+  G   + + Q+ +D
Sbjct: 98  KGILLVGPPGTGKTLLARAAASFTSSVFIAASGSEFIEMYAGIGAKRIRQLFKD 151


>gi|332363431|gb|EGJ41214.1| ATP-dependent Clp protease [Streptococcus sanguinis SK355]
          Length = 756

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 23/101 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTE-----------IGYVG 96
           S++LA  L G+    I+ +++++ E            GYVG
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVG 537


>gi|328945566|gb|EGG39717.1| ATP-dependent Clp protease [Streptococcus sanguinis SK1087]
          Length = 757

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 445 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 497

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 498 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 549

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 550 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 586


>gi|326406143|gb|ADZ63214.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactococcus
           lactis subsp. lactis CV56]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|325694108|gb|EGD36026.1| ATP-dependent Clp protease [Streptococcus sanguinis SK150]
          Length = 756

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 23/101 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 444 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 496

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTE-----------IGYVG 96
           S++LA  L G+    I+ +++++ E            GYVG
Sbjct: 497 SKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVG 537


>gi|323508164|emb|CBQ68035.1| probable RPT1-26S proteasome regulatory subunit [Sporisorium
           reilianum]
          Length = 477

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 253 PKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 308


>gi|316970971|gb|EFV54822.1| 26S protease regulatory subunit 7 [Trichinella spiralis]
          Length = 433

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 209 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 264


>gi|313611199|gb|EFR86009.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes FSL F2-208]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|312864117|ref|ZP_07724352.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
 gi|311100349|gb|EFQ58557.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           +PK +LL GP G GKT +++ +A  A  PF  +  + F E+ +VG
Sbjct: 216 IPKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVG 259


>gi|300727591|ref|ZP_07060980.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Prevotella
           bryantii B14]
 gi|299775111|gb|EFI71714.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Prevotella
           bryantii B14]
          Length = 850

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 23/103 (22%)

Query: 10  REIVSELDRYIIGQQDA-KRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           + + SEL   +IGQ  A  + V    RNR         L+D   P    + +GPTGVGKT
Sbjct: 534 KNMNSELKSLVIGQDGAIDKMVKAIQRNR-------VGLKDPTHPIGAFMFLGPTGVGKT 586

Query: 68  AISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVG 96
            ++++LA ++ G+    I+++++++TE            GYVG
Sbjct: 587 YLAKKLAEKMFGSQDALIRIDMSEYTESFNTSRLIGAPPGYVG 629


>gi|291618563|ref|YP_003521305.1| ClpB [Pantoea ananatis LMG 20103]
 gi|291153593|gb|ADD78177.1| ClpB [Pantoea ananatis LMG 20103]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELHSRVIGQDEAVEAVSNAIR-RSR-----AGLADPNRPVGSFLFLGPTGVGKTELCKSL 622

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 623 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|255637103|gb|ACU18883.1| unknown [Glycine max]
          Length = 423

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 27/161 (16%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           Q+   A+ + + ++ R Q+L         PK +LL GP G GKT ++R  A    A F+K
Sbjct: 180 QELVEAIVLPMTHKERFQKLGV-----RPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 234

Query: 84  VEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-- 141
           +   +  ++ ++G    +++RD    A  + +E      +   +I  +E  +DA+  K  
Sbjct: 235 LAGPQLVQM-FIGDGA-KLVRD----AFQLAKE------KSPCTIFIDE--IDAIGTKRF 280

Query: 142 -TATSNTREVFRKKLR-----DGEISDKEIDIEVADTSSDI 176
            +  S  REV R  L      DG  SD  I +  A   +DI
Sbjct: 281 DSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321


>gi|242240264|ref|YP_002988445.1| protein disaggregation chaperone [Dickeya dadantii Ech703]
 gi|242132321|gb|ACS86623.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech703]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            E+ + +IGQ +A  AVA    N  RR +  A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QEMHQRVIGQNEAVEAVA----NSIRRSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKT 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LAAFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|225075507|ref|ZP_03718706.1| hypothetical protein NEIFLAOT_00520 [Neisseria flavescens
           NRL30031/H210]
 gi|224953142|gb|EEG34351.1| hypothetical protein NEIFLAOT_00520 [Neisseria flavescens
           NRL30031/H210]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L   + GQ++A  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 456 DLKNMVYGQENAIDALVAAVKMSRSGLALP----DKPI-GSFLFSGPTGVGKTEVAKQLA 510

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 511 YSMGVPLQRFDMSEYMEPHAVSR 533


>gi|217972308|ref|YP_002357059.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304410272|ref|ZP_07391891.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|307302017|ref|ZP_07581775.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|217497443|gb|ACK45636.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304351681|gb|EFM16080.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|306914055|gb|EFN44476.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|315268724|gb|ADT95577.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS678]
          Length = 652

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|217965681|ref|YP_002351359.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|290892627|ref|ZP_06555620.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           J2-071]
 gi|217334951|gb|ACK40745.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|290557936|gb|EFD91457.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           J2-071]
 gi|307569771|emb|CAR82950.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes L99]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|239825665|ref|YP_002948289.1| ATPase AAA [Geobacillus sp. WCH70]
 gi|239805958|gb|ACS23023.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
          Length = 811

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 507 LHSRVVGQDEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 560


>gi|112148342|gb|ABI13537.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           helveticus CNRZ32]
          Length = 732

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R + ++L  ++IGQ  A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 430 RNLANDLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 481

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G+    I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 482 TELAKQLAKQMFGSENAMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 533

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           EQ   N    IL   + K A  +   +F + L DG ++D +
Sbjct: 534 EQVRHNPYSLILLDEIEK-AHPDVLNLFLQILDDGRLTDSQ 573


>gi|111378714|gb|ABH09265.1| cell division protein [Paulinella chromatophora]
          Length = 621

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK ILL G  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 197 IPKGILLAGSPGTGKTLLAKAVAGEARVPFFSIAGSEFVEM-FVGVGASR-VRDLFEQA 253


>gi|28188591|gb|AAN46221.1| unknown protein [Arabidopsis lyrata]
 gi|28188593|gb|AAN46222.1| unknown protein [Arabidopsis lyrata]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 64  RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 121


>gi|163849007|ref|YP_001637051.1| ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222526969|ref|YP_002571440.1| ATPase AAA-2 domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163670296|gb|ABY36662.1| ATPase AAA-2 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450848|gb|ACM55114.1| ATPase AAA-2 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 14/63 (22%)

Query: 55  NILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVE 100
            +L +GPTGVGKTA +R LA L    G+ F+K++ + F++       +G    YVGR+ +
Sbjct: 61  TLLFLGPTGVGKTATARALAELLRPDGSAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQK 120

Query: 101 QII 103
            ++
Sbjct: 121 PLL 123


>gi|125974293|ref|YP_001038203.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|256003489|ref|ZP_05428479.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|281418347|ref|ZP_06249367.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|125714518|gb|ABN53010.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|255992513|gb|EEU02605.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|281409749|gb|EFB40007.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|316941442|gb|ADU75476.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313]
          Length = 818

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A +A++ A+R R R       L+D   P  + + +GPTGVGKT +S+ LA
Sbjct: 507 LHKRVIGQDEAVKAISKAIR-RGR-----VGLKDPKRPVGSFIFLGPTGVGKTELSKALA 560

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             L G     I+++++++ E   V R V
Sbjct: 561 EALFGEENAMIRIDMSEYMEKHSVSRLV 588


>gi|328792984|ref|XP_623743.2| PREDICTED: 26S protease regulatory subunit 7 [Apis mellifera]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 185 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 240


>gi|327394943|dbj|BAK12365.1| chaperone ClpB [Pantoea ananatis AJ13355]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 569 ELHSRVIGQDEAVEAVSNAIR-RSR-----AGLADPNRPVGSFLFLGPTGVGKTELCKSL 622

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A     +    +++++++F E   V R V
Sbjct: 623 ANFLFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|328542101|ref|YP_004302210.1| ATPase, AAA family [polymorphum gilvum SL003B-26A1]
 gi|326411850|gb|ADZ68913.1| ATPase, AAA family [Polymorphum gilvum SL003B-26A1]
          Length = 865

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L R ++GQ +A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 565 DLARRVVGQAEAIHAVSTAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELTKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 619 AAFLFDDDTAMVRIDMSEFMEKHSVAR 645


>gi|307106887|gb|EFN55131.1| hypothetical protein CHLNCDRAFT_134194 [Chlorella variabilis]
          Length = 429

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 43  LPADLRDELM------PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           LP   RD  +      PK +LL GP G GKT I+R  A    A F+K+  T   ++ ++G
Sbjct: 194 LPITHRDRFVKLGIKPPKGVLLHGPPGTGKTLIARACAAQTNATFLKLAGTSLVQM-FIG 252

Query: 97  RNVEQIIRDLVDVA 110
               +++RD   +A
Sbjct: 253 DGA-KMVRDAFALA 265


>gi|301630819|ref|XP_002944514.1| PREDICTED: chaperone protein clpB-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 739

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           +L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 436 KLHERVIGQDEAISAVAHAIR-RSR-----AGLSDPQRPTGSFLFLGPTGVGKTELCKAL 489

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    I++++++F E   V R
Sbjct: 490 AGFLFDSEEHLIRIDMSEFMEKHSVAR 516


>gi|226471210|emb|CAX70686.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 271

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 47  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 102


>gi|303273680|ref|XP_003056193.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462277|gb|EEH59569.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 886

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ  A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +++ 
Sbjct: 572 AELHQRVIGQDHAVTSVAEAV------QRSRADLSDPNGPVASFMFLGPTGVGKTELAKA 625

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGR 97
           LA     +    I+++++++ E   V R
Sbjct: 626 LANYLFNSDNALIRLDMSEYMEKHSVAR 653


>gi|229816837|ref|ZP_04447119.1| hypothetical protein BIFANG_02085 [Bifidobacterium angulatum DSM
           20098]
 gi|229785853|gb|EEP21967.1| hypothetical protein BIFANG_02085 [Bifidobacterium angulatum DSM
           20098]
          Length = 881

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 10/82 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           +EL + IIGQ +A  A+A ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 513 AELHKRIIGQDEAVSALARSIR-RTR-----VGLKDPKRPAGSFIFAGPTGVGKTELAKT 566

Query: 73  LARLA---GAPFIKVEVTKFTE 91
           LA          I+V++++F+E
Sbjct: 567 LAEFLFDDEDALIRVDMSEFSE 588


>gi|170743190|ref|YP_001771845.1| ATP-dependent chaperone ClpB [Methylobacterium sp. 4-46]
 gi|168197464|gb|ACA19411.1| ATP-dependent chaperone ClpB [Methylobacterium sp. 4-46]
          Length = 878

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ++A  AVA A+R R R     A L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 572 LGRRVVGQREAVEAVATAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELTKALA 625


>gi|28188573|gb|AAN46212.1| unknown protein [Arabidopsis thaliana]
 gi|28188575|gb|AAN46213.1| unknown protein [Arabidopsis thaliana]
 gi|28188577|gb|AAN46214.1| unknown protein [Arabidopsis thaliana]
 gi|28188579|gb|AAN46215.1| unknown protein [Arabidopsis thaliana]
 gi|28188581|gb|AAN46216.1| unknown protein [Arabidopsis thaliana]
 gi|28188583|gb|AAN46217.1| unknown protein [Arabidopsis thaliana]
 gi|28188585|gb|AAN46218.1| unknown protein [Arabidopsis thaliana]
 gi|28188587|gb|AAN46219.1| unknown protein [Arabidopsis thaliana]
 gi|28188589|gb|AAN46220.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 64  RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 121


>gi|15672624|ref|NP_266798.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|12723546|gb|AAK04740.1|AE006297_3 ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|117919472|ref|YP_868664.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
 gi|117611804|gb|ABK47258.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|324993393|gb|EGC25313.1| ATP-dependent Clp protease [Streptococcus sanguinis SK405]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 21/156 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 409 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 462 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 513

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
             N    IL   V K A  +   +F + L DG ++D
Sbjct: 514 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTD 548


>gi|319427312|gb|ADV55386.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens 200]
          Length = 652

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 189 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245


>gi|226480086|emb|CAX73339.1| NEM-sensitive fusion protein 2 [Schistosoma japonicum]
          Length = 743

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           +LL GP   GKTA++  +ARL+G PF+K+ VT    IG+ 
Sbjct: 541 MLLEGPPKAGKTALAVEIARLSGFPFVKI-VTSHKMIGFT 579


>gi|255520324|ref|ZP_05387561.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
           J1-175]
          Length = 819

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|255065180|ref|ZP_05317035.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           sicca ATCC 29256]
 gi|255050601|gb|EET46065.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           sicca ATCC 29256]
          Length = 761

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L   + GQ++A  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 458 DLKNMVYGQENAIDALVAAVKMSRSGLALP----DKPI-GSFLFSGPTGVGKTEVAKQLA 512

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 513 YSMGVPLQRFDMSEYMEPHAVSR 535


>gi|241758789|ref|ZP_04756902.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           flavescens SK114]
 gi|241320997|gb|EER57210.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           flavescens SK114]
          Length = 588

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 299 LHRRVVGQDEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 352

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 353 GFLFDSEDHLIRIDMSEYMEKHAVAR 378


>gi|255728833|ref|XP_002549342.1| vesicular-fusion protein SEC18 [Candida tropicalis MYA-3404]
 gi|240133658|gb|EER33214.1| vesicular-fusion protein SEC18 [Candida tropicalis MYA-3404]
          Length = 797

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 10/58 (17%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKV----------EVTKFTEIGYVGRNVEQ 101
           ++ILL GP GVGKTAI+  LA  +  PFIK+          E+ K  EI  V R+V +
Sbjct: 597 RSILLYGPPGVGKTAIATTLALNSDFPFIKMLSAETLVGMGELRKIQEIDNVFRDVHK 654


>gi|162453593|ref|YP_001615960.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161164175|emb|CAN95480.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1297

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           D  D   P    L+G  G+GKT ++   A +AG P   V V     +  +     Q +R 
Sbjct: 460 DAFDGTCPGLFTLIGDAGLGKTRLAAEAASIAGVPVPDVRVVAARALHPIHGGAAQAVRA 519

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
           L+ VA++  RES  D    Q  +   ER+ + L G T  +    +     R G +S +
Sbjct: 520 LLRVALDAPRESPGDP--RQFCV---ERLGETLGGATWEAVAAALGWAGPRGGRLSGE 572


>gi|157962981|ref|YP_001503015.1| ATPase [Shewanella pealeana ATCC 700345]
 gi|157847981|gb|ABV88480.1| ATPase AAA-2 domain protein [Shewanella pealeana ATCC 700345]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  +V+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDSVSNAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +      +  ++V++++F E   V R V
Sbjct: 620 KFLFDTESALVRVDMSEFMEKHSVSRLV 647


>gi|153956418|ref|YP_001397183.1| protease-related protein [Clostridium kluyveri DSM 555]
 gi|219856728|ref|YP_002473850.1| hypothetical protein CKR_3385 [Clostridium kluyveri NBRC 12016]
 gi|302387511|ref|YP_003823333.1| ATPase AAA [Clostridium saccharolyticum WM1]
 gi|146349276|gb|EDK35812.1| Protease-related protein [Clostridium kluyveri DSM 555]
 gi|219570452|dbj|BAH08436.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
 gi|302198139|gb|ADL05710.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +I +    YI+GQ+ AK  + ++L         P   +    P  ++  GP+GVGKT  +
Sbjct: 130 KINNSFSEYIVGQEKAKERILVSL--------YPLLNKSNRKPMVLMFYGPSGVGKTETA 181

Query: 71  RRLARLAGAPFIKVEVTKFTE---IGYV-GRNVEQ--IIRDLVDVAINIV 114
           + +++  G    + + + F      GY+ G N  Q    +DL++   N++
Sbjct: 182 KFISKTLGEKLFRKQFSMFHSGEFSGYLFGGNHSQPCFAKDLLERESNVI 231


>gi|219847884|ref|YP_002462317.1| ATPase AAA-2 domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542143|gb|ACL23881.1| ATPase AAA-2 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 14/63 (22%)

Query: 55  NILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVE 100
            +L +GPTGVGKTA +R LA L    G+ F+K++ + F++       +G    YVGR+ +
Sbjct: 60  TLLFLGPTGVGKTATARALAELLRPDGSAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQK 119

Query: 101 QII 103
            ++
Sbjct: 120 PLL 122


>gi|116871616|ref|YP_848397.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740494|emb|CAK19614.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|22329400|ref|NP_172231.2| ftsh10 (FtsH protease 10); ATP binding / ATPase/
           metalloendopeptidase/ nucleoside-triphosphatase/
           nucleotide binding / zinc ion binding [Arabidopsis
           thaliana]
 gi|75331189|sp|Q8VZI8|FTSHA_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 10,
           mitochondrial; Short=AtFTSH10; Flags: Precursor
 gi|17381253|gb|AAL36045.1| At1g07510/F22G5_9 [Arabidopsis thaliana]
 gi|21700787|gb|AAM70517.1| At1g07510/F22G5_9 [Arabidopsis thaliana]
 gi|332190016|gb|AEE28137.1| FTSH protease 10 [Arabidopsis thaliana]
          Length = 813

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRD 105
           +PK  LLVGP G GKT +++  A  +  PF+ +  + F E+ +VG      RN+ Q  R 
Sbjct: 359 IPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQ 417

Query: 106 LVDVAINI 113
                I I
Sbjct: 418 CAPSIIFI 425


>gi|1314297|gb|AAC44446.1| ClpC ATPase [Listeria monocytogenes]
          Length = 825

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 510 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 563


>gi|126175446|ref|YP_001051595.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS155]
 gi|153001797|ref|YP_001367478.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160876530|ref|YP_001555846.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
 gi|125998651|gb|ABN62726.1| membrane protease FtsH catalytic subunit [Shewanella baltica OS155]
 gi|151366415|gb|ABS09415.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160862052|gb|ABX50586.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|16802278|ref|NP_463763.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           EGD-e]
 gi|47097423|ref|ZP_00234971.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224498922|ref|ZP_03667271.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           Finland 1988]
 gi|224502473|ref|ZP_03670780.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
           R2-561]
 gi|254828692|ref|ZP_05233379.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           N3-165]
 gi|254831943|ref|ZP_05236598.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           10403S]
 gi|254900587|ref|ZP_05260511.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J0161]
 gi|254913462|ref|ZP_05263474.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J2818]
 gi|254937957|ref|ZP_05269654.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
           F6900]
 gi|284800527|ref|YP_003412392.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5578]
 gi|284993713|ref|YP_003415481.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5923]
 gi|16409597|emb|CAD00759.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           EGD-e]
 gi|47014200|gb|EAL05185.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258601096|gb|EEW14421.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           N3-165]
 gi|258610567|gb|EEW23175.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
           F6900]
 gi|284056089|gb|ADB67030.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5578]
 gi|284059180|gb|ADB70119.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5923]
 gi|293591469|gb|EFF99803.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J2818]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|332362892|gb|EGJ40685.1| ATP-dependent Clp protease [Streptococcus sanguinis SK49]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 21/156 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 409 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 462 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 513

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
             N    IL   V K A  +   +F + L DG ++D
Sbjct: 514 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTD 548


>gi|324516307|gb|ADY46490.1| 26S protease regulatory subunit 7 [Ascaris suum]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 212 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 267


>gi|302786648|ref|XP_002975095.1| hypothetical protein SELMODRAFT_174539 [Selaginella moellendorffii]
 gi|300157254|gb|EFJ23880.1| hypothetical protein SELMODRAFT_174539 [Selaginella moellendorffii]
          Length = 885

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A +AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ L
Sbjct: 561 ELHKRVVGQEPAVQAVADAI------QRSRAGLSDPNRPIASFMFMGPTGVGKTELAKAL 614

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A          I+++++++ E   V R
Sbjct: 615 AAYLFNTEEALIRIDMSEYMEKHTVSR 641


>gi|281491118|ref|YP_003353098.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactococcus
           lactis subsp. lactis KF147]
 gi|281374868|gb|ADA64387.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactococcus
           lactis subsp. lactis KF147]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|254853501|ref|ZP_05242849.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
 gi|258606873|gb|EEW19481.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
          Length = 821

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|240125502|ref|ZP_04738388.1| putative ClpB protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684092|ref|ZP_06150954.1| ClpB protein [Neisseria gonorrhoeae SK-92-679]
 gi|268624376|gb|EEZ56776.1| ClpB protein [Neisseria gonorrhoeae SK-92-679]
          Length = 859

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 570 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 624 GFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|240080989|ref|ZP_04725532.1| putative ClpB protein [Neisseria gonorrhoeae FA19]
 gi|240117696|ref|ZP_04731758.1| putative ClpB protein [Neisseria gonorrhoeae PID1]
 gi|240123250|ref|ZP_04736206.1| putative ClpB protein [Neisseria gonorrhoeae PID332]
 gi|268597099|ref|ZP_06131266.1| chaperone clpB [Neisseria gonorrhoeae FA19]
 gi|268603397|ref|ZP_06137564.1| ClpB protein [Neisseria gonorrhoeae PID1]
 gi|268681877|ref|ZP_06148739.1| ClpB protein [Neisseria gonorrhoeae PID332]
 gi|268550887|gb|EEZ45906.1| chaperone clpB [Neisseria gonorrhoeae FA19]
 gi|268587528|gb|EEZ52204.1| ClpB protein [Neisseria gonorrhoeae PID1]
 gi|268622161|gb|EEZ54561.1| ClpB protein [Neisseria gonorrhoeae PID332]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 622 GFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|225560801|gb|EEH09082.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 917

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 458 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 514


>gi|261417579|ref|YP_003251261.1| ATPase AAA [Geobacillus sp. Y412MC61]
 gi|319765237|ref|YP_004130738.1| ATPase AAA [Geobacillus sp. Y412MC52]
 gi|261374036|gb|ACX76779.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC61]
 gi|317110103|gb|ADU92595.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC52]
          Length = 810

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVVGQDEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
 gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
          Length = 581

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A    A
Sbjct: 309 IAGQHAAKQALQEMVILPSLRPELFTGLRTP--SRGLLLFGPPGNGKTLLARAVASECNA 366

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +     T   YVG   E+++R L  VA
Sbjct: 367 TFFSISAASLTS-KYVGEG-EKLVRALFAVA 395


>gi|196007252|ref|XP_002113492.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190583896|gb|EDV23966.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 265


>gi|190150414|ref|YP_001968939.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189915545|gb|ACE61797.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 781

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|170094870|ref|XP_001878656.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647110|gb|EDR11355.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 463

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 231 PKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 286


>gi|218781272|ref|YP_002432590.1| ATP-dependent chaperone ClpB [Desulfatibacillum alkenivorans AK-01]
 gi|218762656|gb|ACL05122.1| ATP-dependent chaperone ClpB [Desulfatibacillum alkenivorans AK-01]
          Length = 862

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           S L++ +IGQ DA  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +++ 
Sbjct: 569 SRLEKRVIGQNDAIVAVSNAVR-RAR-----SGLQDPNRPIGSFIFMGPTGVGKTELAKA 622

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA          ++V+++++ E   V R
Sbjct: 623 LAEFIFDDDQAIVRVDMSEYMEKHSVSR 650


>gi|156373877|ref|XP_001629536.1| predicted protein [Nematostella vectensis]
 gi|156216539|gb|EDO37473.1| predicted protein [Nematostella vectensis]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|119944514|ref|YP_942194.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Psychromonas
           ingrahamii 37]
 gi|119863118|gb|ABM02595.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychromonas
           ingrahamii 37]
          Length = 752

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)

Query: 47  LRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGY 94
           L DE  P  + L  GPTGVGKT ++++LA+  G   ++ +++++ E            GY
Sbjct: 480 LSDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGY 539

Query: 95  VGRNVEQIIRDLV 107
           VG     ++ D V
Sbjct: 540 VGYEQAGLLTDAV 552


>gi|56418613|ref|YP_145931.1| ATP-dependent Clp protease ATPase [Geobacillus kaustophilus HTA426]
 gi|297528454|ref|YP_003669729.1| ATPase AAA [Geobacillus sp. C56-T3]
 gi|56378455|dbj|BAD74363.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
           HTA426]
 gi|297251706|gb|ADI25152.1| ATPase AAA-2 domain protein [Geobacillus sp. C56-T3]
          Length = 810

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVVGQDEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 559


>gi|6324691|ref|NP_014760.1| Rpt5p [Saccharomyces cerevisiae S288c]
 gi|464859|sp|P33297|PRS6A_YEAST RecName: Full=26S protease regulatory subunit 6A; AltName:
           Full=Tat-binding protein homolog 1; Short=TBP-1
 gi|313878|emb|CAA51971.1| YTA1 [Saccharomyces cerevisiae]
 gi|1050819|emb|CAA62114.1| ORF O3258 [Saccharomyces cerevisiae]
 gi|1164962|emb|CAA64037.1| YOR3258w [Saccharomyces cerevisiae]
 gi|1420311|emb|CAA99315.1| YTA1 [Saccharomyces cerevisiae]
 gi|151945739|gb|EDN63980.1| regulatory particle triple-a protein, or regulatory particle
           triphosphatase [Saccharomyces cerevisiae YJM789]
 gi|190407446|gb|EDV10713.1| 26S protease regulatory subunit 6A [Saccharomyces cerevisiae
           RM11-1a]
 gi|256272993|gb|EEU07957.1| Rpt5p [Saccharomyces cerevisiae JAY291]
 gi|259149600|emb|CAY86404.1| Rpt5p [Saccharomyces cerevisiae EC1118]
 gi|285814999|tpg|DAA10892.1| TPA: Rpt5p [Saccharomyces cerevisiae S288c]
 gi|323302883|gb|EGA56687.1| Rpt5p [Saccharomyces cerevisiae FostersB]
 gi|323307176|gb|EGA60459.1| Rpt5p [Saccharomyces cerevisiae FostersO]
 gi|323335519|gb|EGA76804.1| Rpt5p [Saccharomyces cerevisiae Vin13]
 gi|323352094|gb|EGA84631.1| Rpt5p [Saccharomyces cerevisiae VL3]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK  L+ GP G GKT ++R  A    A F+K+   +  ++ Y+G    +++RD   +A
Sbjct: 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-KLVRDAFALA 270


>gi|46906465|ref|YP_012854.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093952|ref|ZP_00231688.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
 gi|226222861|ref|YP_002756968.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           Clip81459]
 gi|254825724|ref|ZP_05230725.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
 gi|254932450|ref|ZP_05265809.1| ClpC ATPase [Listeria monocytogenes HPB2262]
 gi|300764643|ref|ZP_07074635.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
 gi|46879729|gb|AAT03031.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017673|gb|EAL08470.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
 gi|225875323|emb|CAS04020.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584007|gb|EFF96039.1| ClpC ATPase [Listeria monocytogenes HPB2262]
 gi|293594968|gb|EFG02729.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
 gi|300514750|gb|EFK41805.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
 gi|328467843|gb|EGF38883.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes 1816]
 gi|332310643|gb|EGJ23738.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|71004206|ref|XP_756769.1| hypothetical protein UM00622.1 [Ustilago maydis 521]
 gi|46095658|gb|EAK80891.1| hypothetical protein UM00622.1 [Ustilago maydis 521]
          Length = 478

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 254 PKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 309


>gi|110635325|ref|YP_675533.1| ATPase AAA-2 [Mesorhizobium sp. BNC1]
 gi|110286309|gb|ABG64368.1| ATPase AAA-2 [Chelativorans sp. BNC1]
          Length = 891

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 588 ELAKRVIGQGEAVQAVSKAVR-RAR-----AGLQDPNRPLGSFMFLGPTGVGKTELTKAL 641

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 642 AAFLFDDEQAMVRIDMSEFMEKHSVAR 668


>gi|319937422|ref|ZP_08011829.1| ATP-dependent protease La [Coprobacillus sp. 29_1]
 gi|319807788|gb|EFW04381.1| ATP-dependent protease La [Coprobacillus sp. 29_1]
          Length = 774

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIK 83
           I LVGP GVGKT+IS+ +AR  G  F+K
Sbjct: 353 ICLVGPPGVGKTSISKSIARALGRKFVK 380


>gi|317472493|ref|ZP_07931814.1| ATPase [Anaerostipes sp. 3_2_56FAA]
 gi|316900007|gb|EFV22000.1| ATPase [Anaerostipes sp. 3_2_56FAA]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ  A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 514 LHKQVIGQDKAVEAVARAIK-RSR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKSLA 567

Query: 75  RLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +         I+V+++++ E            GYVG
Sbjct: 568 KAMFGREEDLIRVDMSEYMEKHSVSKIIGSPPGYVG 603


>gi|313139902|ref|ZP_07802095.1| ClpC [Bifidobacterium bifidum NCIMB 41171]
 gi|313132412|gb|EFR50029.1| ClpC [Bifidobacterium bifidum NCIMB 41171]
          Length = 867

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 525 SELHKRIIGQDEAVSALSRSIR-RTR-----VGLKDPKRPAGSFIFAGPTGVGKTELAKA 578

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 579 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 616


>gi|294494986|ref|YP_003541479.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
           5219]
 gi|292665985|gb|ADE35834.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
           5219]
          Length = 429

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT +++ +A    A FI+V  ++  +  Y+G    +++R++ D+A
Sbjct: 205 PKGVLLHGPPGTGKTMMAKAVAHRTDATFIRVVGSELVQ-KYIGEG-SRLVREVFDMA 260


>gi|289433587|ref|YP_003463459.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289169831|emb|CBH26369.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|269102227|ref|ZP_06154924.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162125|gb|EEZ40621.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 754

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 16/105 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
           S+L   + GQ DA   +  A++    R  L AD +      + L  GPTGVGKT ++ +L
Sbjct: 456 SKLKMLVFGQDDAIDVLTEAIK--LSRAGLGADNKP---VGSFLFAGPTGVGKTEVTVQL 510

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           AR  G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 511 ARTLGIDLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAV 555


>gi|260102919|ref|ZP_05753156.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083263|gb|EEW67383.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R + ++L  ++IGQ  A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 427 RNLANDLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 478

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G+    I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 479 TELAKQLAKQMFGSENAMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 530

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           EQ   N    IL   + K A  +   +F + L DG ++D +
Sbjct: 531 EQVRHNPYSLILLDEIEK-AHPDVLNLFLQILDDGRLTDSQ 570


>gi|254560129|ref|YP_003067224.1| hypothetical protein METDI1647 [Methylobacterium extorquens DM4]
 gi|254267407|emb|CAX23244.1| hypothetical protein, putative ATPase domain [Methylobacterium
           extorquens DM4]
          Length = 719

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + ELD Y  G+       A A    +R  QL      E   + +LL GP GVGKT+ +R 
Sbjct: 285 LEELDGY--GEAKTWGLAAAADLQAYRSGQLS---WAEFDHRGLLLSGPPGVGKTSFARA 339

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           LA+ A  P +   V ++    Y+   ++ I
Sbjct: 340 LAKSARVPLVGTSVAEWNSADYLSGTLQAI 369


>gi|261364237|ref|ZP_05977120.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           mucosa ATCC 25996]
 gi|288567474|gb|EFC89034.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           mucosa ATCC 25996]
          Length = 761

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +L   + GQ++A  A+  A++       LP    D+ +  + L  GPTGVGKT ++++LA
Sbjct: 458 DLKNMVYGQENAIDALVAAVKMSRSGLALP----DKPI-GSFLFSGPTGVGKTEVAKQLA 512

Query: 75  RLAGAPFIKVEVTKFTEIGYVGR 97
              G P  + +++++ E   V R
Sbjct: 513 YSMGVPLQRFDMSEYMEPHAVSR 535


>gi|226323338|ref|ZP_03798856.1| hypothetical protein COPCOM_01112 [Coprococcus comes ATCC 27758]
 gi|225208022|gb|EEG90376.1| hypothetical protein COPCOM_01112 [Coprococcus comes ATCC 27758]
          Length = 815

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L++ +IGQ++A +A++ A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 509 LEKRVIGQEEAIQALSKAVK-RGR-----VGLKDPARPIGSFLFLGPTGVGKTELSKALA 562

Query: 75  R-LAGAP--FIKVEVTKFTE-----------IGYVG 96
             L G     I+V+++++ E            GYVG
Sbjct: 563 EALFGNEEDMIRVDMSEYMEKHSVSKMIGSPPGYVG 598


>gi|213403938|ref|XP_002172741.1| 19S proteasome regulatory subunit Rpt1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000788|gb|EEB06448.1| 19S proteasome regulatory subunit Rpt1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK I+L GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 213 PKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 268


>gi|194098306|ref|YP_002001364.1| putative ClpB protein [Neisseria gonorrhoeae NCCP11945]
 gi|239998724|ref|ZP_04718648.1| putative ClpB protein [Neisseria gonorrhoeae 35/02]
 gi|268594573|ref|ZP_06128740.1| chaperone clpB [Neisseria gonorrhoeae 35/02]
 gi|193933596|gb|ACF29420.1| putative ClpB protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547962|gb|EEZ43380.1| chaperone clpB [Neisseria gonorrhoeae 35/02]
 gi|317164015|gb|ADV07556.1| putative ClpB protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 859

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 570 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 624 GFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|110669001|ref|YP_658812.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
           16790]
 gi|109626748|emb|CAJ53215.1| proteasome-activating nucleotidase 1 [Haloquadratum walsbyi DSM
           16790]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 14/95 (14%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P  +LL GP G GKT +++ +A    A FIK+  ++     ++G    +++RDL D+A  
Sbjct: 186 PSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVR-KFIGEG-SRLVRDLFDLAAE 243

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNT 147
                     RE A I  +E  +DA+  K   S T
Sbjct: 244 ----------REPAVIFIDE--IDAVASKRTDSKT 266


>gi|8778569|gb|AAF79577.1|AC022464_35 F22G5.10 [Arabidopsis thaliana]
          Length = 843

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRD 105
           +PK  LLVGP G GKT +++  A  +  PF+ +  + F E+ +VG      RN+ Q  R 
Sbjct: 367 IPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQ 425

Query: 106 LVDVAINI 113
                I I
Sbjct: 426 CAPSIIFI 433


>gi|15675411|ref|NP_269585.1| putative ATP-dependent protease [Streptococcus pyogenes M1 GAS]
 gi|13622598|gb|AAK34306.1| putative ATP-dependent protease [Streptococcus pyogenes M1 GAS]
          Length = 760

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + ++L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 451 LANDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGTPNRPIGSFLFVGPTGVGKTEL 503

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      +      ++ EQ 
Sbjct: 504 SKQLAIELFGSTNNMIRFDMSEYMEKHAVAK--------LVGAPPGYIGYEEAGQLTEQV 555

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 556 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 592


>gi|121998182|ref|YP_001002969.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Halorhodospira halophila SL1]
 gi|121589587|gb|ABM62167.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Halorhodospira
           halophila SL1]
          Length = 756

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
             L  GPTGVGKT ++R+LA + G   I+ +++++ E   V R
Sbjct: 494 TFLFAGPTGVGKTEVTRQLAEVTGVQMIRFDMSEYMERHTVSR 536


>gi|120597893|ref|YP_962467.1| ATP-dependent metalloprotease FtsH [Shewanella sp. W3-18-1]
 gi|120557986|gb|ABM23913.1| membrane protease FtsH catalytic subunit [Shewanella sp. W3-18-1]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|223932639|ref|ZP_03624639.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
 gi|223898749|gb|EEF65110.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
          Length = 699

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67
           +E+ + L   +IGQ DA  AV+ A+R NR       A   D   P  + L VGPTGVGKT
Sbjct: 405 KELKNRLAANVIGQDDAVEAVSRAIRRNR-------AGFDDGNRPIGSFLFVGPTGVGKT 457

Query: 68  AISRRLA 74
            ++++LA
Sbjct: 458 ELAKQLA 464


>gi|325089091|gb|EGC42401.1| matrix AAA protease MAP-1 [Ajellomyces capsulatus H88]
          Length = 917

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 458 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 514


>gi|312380668|gb|EFR26600.1| hypothetical protein AND_07217 [Anopheles darlingi]
          Length = 304

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 80  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 135


>gi|312961673|ref|ZP_07776171.1| ATP-dependent clp protease [Pseudomonas fluorescens WH6]
 gi|311283932|gb|EFQ62515.1| ATP-dependent clp protease [Pseudomonas fluorescens WH6]
          Length = 756

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 6   NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60
           N S +E++  L+R     + GQ  A  A++ A++         A L+    P  + L  G
Sbjct: 446 NSSDKELLRNLERDLKLTVFGQDAAIDALSTAIKLSR------AGLKSPDKPVGSFLFAG 499

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT  +R+LA+  G   ++ +++++ E   V R
Sbjct: 500 PTGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSR 536


>gi|240280655|gb|EER44159.1| matrix AAA protease MAP-1 [Ajellomyces capsulatus H143]
          Length = 917

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 458 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 514


>gi|240014358|ref|ZP_04721271.1| putative ClpB protein [Neisseria gonorrhoeae DGI18]
 gi|240016791|ref|ZP_04723331.1| putative ClpB protein [Neisseria gonorrhoeae FA6140]
 gi|240121920|ref|ZP_04734882.1| putative ClpB protein [Neisseria gonorrhoeae PID24-1]
 gi|260440792|ref|ZP_05794608.1| putative ClpB protein [Neisseria gonorrhoeae DGI2]
 gi|291044107|ref|ZP_06569823.1| ClpB protein [Neisseria gonorrhoeae DGI2]
 gi|291012570|gb|EFE04559.1| ClpB protein [Neisseria gonorrhoeae DGI2]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 622 GFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|225711196|gb|ACO11444.1| 26S protease regulatory subunit 7 [Caligus rogercresseyi]
          Length = 435

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 266


>gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 740

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +P+ ILL GP G GKT I R  A   G PFI++
Sbjct: 199 IPRGILLHGPPGCGKTVICRAFAAELGVPFIEI 231


>gi|220911112|ref|YP_002486421.1| ATPase AAA [Arthrobacter chlorophenolicus A6]
 gi|219857990|gb|ACL38332.1| ATPase AAA-2 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 830

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 12/103 (11%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57
            KLT   S R  ++  EL + ++GQ +A +A++ A+R R R     A L+D   P  + +
Sbjct: 496 FKLTEEESSRLLKMEDELHKRVVGQDEAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 549

Query: 58  LVGPTGVGKTAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGR 97
             GPTGVGKT +++ LA  L G     I +++++++E   V R
Sbjct: 550 FAGPTGVGKTELAKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|90075760|dbj|BAE87560.1| unnamed protein product [Macaca fascicularis]
          Length = 217

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 47  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 102


>gi|160881583|ref|YP_001560551.1| ATPase [Clostridium phytofermentans ISDg]
 gi|160430249|gb|ABX43812.1| ATPase AAA-2 domain protein [Clostridium phytofermentans ISDg]
          Length = 824

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A  AVA A+R R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 512 LHERVVGQSEAVSAVAKAIR-RGR-----VGLKDPNRPIGSFLFLGPTGVGKTELSKALA 565

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             + G+    I+V+++++ E            GYVG
Sbjct: 566 EAMFGSENSMIRVDMSEYMEKHSVSKMIGSPPGYVG 601


>gi|59801418|ref|YP_208130.1| putative ClpB protein [Neisseria gonorrhoeae FA 1090]
 gi|240127954|ref|ZP_04740615.1| putative ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268686347|ref|ZP_06153209.1| ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293399276|ref|ZP_06643441.1| ATP-dependent chaperone ClpB [Neisseria gonorrhoeae F62]
 gi|59718313|gb|AAW89718.1| putative ClpB protein [Neisseria gonorrhoeae FA 1090]
 gi|268626631|gb|EEZ59031.1| ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291610690|gb|EFF39800.1| ATP-dependent chaperone ClpB [Neisseria gonorrhoeae F62]
          Length = 859

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 570 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 624 GFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|33866424|ref|NP_897983.1| hypothetical protein SYNW1892 [Synechococcus sp. WH 8102]
 gi|33633202|emb|CAE08407.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 497

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 33  ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           A  N  RR  LP       MP+ +LLVGP G GK+  ++ +AR    P ++++V +    
Sbjct: 249 AFSNEARRFGLP-------MPRGVLLVGPQGTGKSLTAKAIARSWSMPLLRLDVGRLF-A 300

Query: 93  GYVG 96
           G VG
Sbjct: 301 GLVG 304


>gi|26987361|ref|NP_742786.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
 gi|54035836|sp|Q88Q71|CLPB_PSEPK RecName: Full=Chaperone protein ClpB
 gi|24982014|gb|AAN66250.1|AE016253_5 ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
          Length = 854

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHQRVIGQSEAVTAVANAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|16799341|ref|NP_469609.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
 gi|16412693|emb|CAC95497.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|85707682|ref|ZP_01038748.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
 gi|85689216|gb|EAQ29219.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
          Length = 858

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S + + +IGQ  A  AV+ A+R R R     A L+D   P  + L +GPTGVGKT +
Sbjct: 561 EMESIIGKRVIGQSQAIEAVSKAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          +++++++F E   V R
Sbjct: 615 TKALAEFLFDDDQALVRIDMSEFMEKHSVAR 645


>gi|148549484|ref|YP_001269586.1| ATP-dependent protease La [Pseudomonas putida F1]
 gi|148513542|gb|ABQ80402.1| ATP-dependent protease La [Pseudomonas putida F1]
          Length = 805

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 16  LDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           LD+Y  G  D K R +       W+          E+    +LLVGP GVGKT+I + +A
Sbjct: 355 LDQYHAGLDDIKERILEFLAVGAWK---------GEISGSIVLLVGPPGVGKTSIGKSIA 405

Query: 75  RLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLVDVAI 111
              G PF +  V       EI      Y+G    ++++ L DV +
Sbjct: 406 ESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEV 450


>gi|116511437|ref|YP_808653.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107091|gb|ABJ72231.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|325295444|ref|YP_004281958.1| ATPase AAA [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065892|gb|ADY73899.1| ATPase AAA-2 domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A +AVA A++    R +L      +    + L +GPTGVGKT +++ LA
Sbjct: 502 ELHKRVVGQEEAVKAVAKAIK----RSRLGIRSSAQRPIGSFLFLGPTGVGKTELAKALA 557

Query: 75  R-LAG--APFIKVEVTKFTEIGYVGR 97
             L G     I+++++++ E   V R
Sbjct: 558 EALFGDEKAMIRIDMSEYMEKHTVSR 583


>gi|310642065|ref|YP_003946823.1| atpase of the aaa+ class-like protein [Paenibacillus polymyxa SC2]
 gi|309247015|gb|ADO56582.1| ATPase of the AAA+ class-like protein [Paenibacillus polymyxa SC2]
          Length = 267

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 30/164 (18%)

Query: 7   FSPREIVSELDRYIIGQQDA----KRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++P+E   ++ R ++ +++     +    + ++ ++  Q +P       MP  I++ GP 
Sbjct: 25  YTPKECARKVKRIVLAEKNQTIVDEFITILGMKEKFEEQDVP-------MPNKIVMFGPP 77

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQI-----------IRDLVDV 109
           G GKT  +  LA+    P I V +     + +G    NV +I             D  D 
Sbjct: 78  GTGKTLTAFYLAQRLDLPLILVRLDAIIHSHLGETASNVRKIFDYANGTPCVLFLDEFD- 136

Query: 110 AINIVRESRRDEVREQAS-INAEERILDALVGKT---ATSNTRE 149
           A+  +R+S  DEV+E A  +N   + LD   G++   A +N  E
Sbjct: 137 ALGRMRDS-NDEVKEMARVVNTLLQCLDEFGGESVFVAATNLEE 179


>gi|302690770|ref|XP_003035064.1| hypothetical protein SCHCODRAFT_256026 [Schizophyllum commune H4-8]
 gi|300108760|gb|EFJ00162.1| hypothetical protein SCHCODRAFT_256026 [Schizophyllum commune H4-8]
          Length = 894

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 231 PKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 286


>gi|261867258|ref|YP_003255180.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412590|gb|ACX81961.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 856

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 SFLFDSEDAMMRIDMSEFMEKHSVSRLV 647


>gi|256854930|ref|ZP_05560294.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
 gi|307290756|ref|ZP_07570654.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0411]
 gi|256710490|gb|EEU25534.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
 gi|306498176|gb|EFM67695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0411]
 gi|315030822|gb|EFT42754.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4000]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|229591240|ref|YP_002873359.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens SBW25]
 gi|229363106|emb|CAY50113.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens SBW25]
          Length = 756

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 6   NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60
           N S +E++  L+R     + GQ  A  A++ A++         A L+    P  + L  G
Sbjct: 446 NSSDKELLRNLERDLKLTVFGQDAAIDALSTAIKLSR------AGLKSPDKPVGSFLFAG 499

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT  +R+LA+  G   ++ +++++ E   V R
Sbjct: 500 PTGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSR 536


>gi|192359582|ref|YP_001983648.1| ClpB [Cellvibrio japonicus Ueda107]
 gi|190685747|gb|ACE83425.1| ClpB [Cellvibrio japonicus Ueda107]
          Length = 892

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 574 LHKRVIGQHEAVVAVSNAVR-RAR-----AGLSDANRPNGSFLFLGPTGVGKTELCKALA 627

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 628 EFLFDTSDAMVRIDMSEFMEKHSVAR 653


>gi|254302227|ref|ZP_04969585.1| M41 family endopeptidase FtsH [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322419|gb|EDK87669.1| M41 family endopeptidase FtsH [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 714

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 305 IPKGVLLLGQPGTGKTLLAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASR-VRDLFNKA 361


>gi|308804545|ref|XP_003079585.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
 gi|116058040|emb|CAL54243.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
          Length = 844

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + ++GQ +A R+V  A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 536 DLPAELHKRVVGQDEAVRSVCEAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTEL 589

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 590 CKTLASFLFNTEEAMIRIDMSEYMEKHSVSR 620


>gi|91088885|ref|XP_972389.1| PREDICTED: similar to Rpt1 CG1341-PA [Tribolium castaneum]
 gi|270012350|gb|EFA08798.1| hypothetical protein TcasGA2_TC006492 [Tribolium castaneum]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 265


>gi|28188571|gb|AAN46211.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           + ILL GP G GKT +++ +A  AGA FI V ++  T   + G + E+ +R L  +A  +
Sbjct: 64  RGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLAAKV 121


>gi|327473388|gb|EGF18808.1| ATP-dependent Clp protease [Streptococcus sanguinis SK408]
          Length = 718

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 409 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 462 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 513

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             N    IL   V K A  +   +F + L DG ++D +
Sbjct: 514 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTDGQ 550


>gi|323456492|gb|EGB12359.1| hypothetical protein AURANDRAFT_61197 [Aureococcus anophagefferens]
          Length = 1628

 Score = 39.7 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +++L VGP GV K+ + RRL  L G P  ++ +T+FT
Sbjct: 601 EHVLFVGPPGVAKSLLCRRLGELFGGPSFEIALTRFT 637


>gi|313497000|gb|ADR58366.1| ClpB [Pseudomonas putida BIRD-1]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 543 LHQRVIGQSEAVTAVANAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELCKALA 596

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 597 EFLFDTEEAMVRIDMSEFMEKHSVAR 622


>gi|307611666|emb|CBX01357.1| cell division protease ftsH [Legionella pneumophila 130b]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPRGVLLVGSPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|260914708|ref|ZP_05921173.1| competence protein ComM [Pasteurella dagmatis ATCC 43325]
 gi|260631212|gb|EEX49398.1| competence protein ComM [Pasteurella dagmatis ATCC 43325]
          Length = 498

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 16/57 (28%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           IIGQQ AKRA+ IA   +                 N+LL+GP G GKT ++ RL  L
Sbjct: 187 IIGQQHAKRALTIAAAGQ----------------HNLLLLGPPGTGKTMLASRLTSL 227


>gi|256963095|ref|ZP_05567266.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
 gi|307272616|ref|ZP_07553867.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0855]
 gi|256953591|gb|EEU70223.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
 gi|306510718|gb|EFM79737.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0855]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|240115399|ref|ZP_04729461.1| putative ClpB protein [Neisseria gonorrhoeae PID18]
 gi|268601078|ref|ZP_06135245.1| chaperone clpB [Neisseria gonorrhoeae PID18]
 gi|268585209|gb|EEZ49885.1| chaperone clpB [Neisseria gonorrhoeae PID18]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 622 GFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|240112653|ref|ZP_04727143.1| putative ClpB protein [Neisseria gonorrhoeae MS11]
 gi|268598720|ref|ZP_06132887.1| ClpB protein [Neisseria gonorrhoeae MS11]
 gi|268582851|gb|EEZ47527.1| ClpB protein [Neisseria gonorrhoeae MS11]
          Length = 859

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 570 LHRRVVGQNEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 623

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 624 GFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|226293453|gb|EEH48873.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 920

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 461 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 517


>gi|154487051|ref|ZP_02028458.1| hypothetical protein BIFADO_00889 [Bifidobacterium adolescentis
           L2-32]
 gi|154084914|gb|EDN83959.1| hypothetical protein BIFADO_00889 [Bifidobacterium adolescentis
           L2-32]
          Length = 864

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 21/98 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
           SEL + IIGQ +A  A++ ++R R R       L+D   P  + +  GPTGVGKT +++ 
Sbjct: 516 SELHKRIIGQDEAVSALSRSIR-RAR-----VGLKDPKRPAGSFIFAGPTGVGKTELAKA 569

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           LA          I+V++++F+E            GYVG
Sbjct: 570 LAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVG 607


>gi|154278052|ref|XP_001539851.1| hypothetical protein HCAG_05318 [Ajellomyces capsulatus NAm1]
 gi|150413436|gb|EDN08819.1| hypothetical protein HCAG_05318 [Ajellomyces capsulatus NAm1]
          Length = 917

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 458 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 514


>gi|146293935|ref|YP_001184359.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens CN-32]
 gi|145565625|gb|ABP76560.1| membrane protease FtsH catalytic subunit [Shewanella putrefaciens
           CN-32]
          Length = 657

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 194 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 250


>gi|54287934|gb|AAV31414.1| 26S protease regulatory subunit-like protein [Toxoptera citricida]
          Length = 437

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 213 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 268


>gi|52842993|ref|YP_096792.1| cell division protein FtsH [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295624|ref|YP_128039.1| cell division protease ftsH [Legionella pneumophila str. Lens]
 gi|54298778|ref|YP_125147.1| cell division protease ftsH [Legionella pneumophila str. Paris]
 gi|52630104|gb|AAU28845.1| cell division protein FtsH [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752563|emb|CAH13995.1| Cell division protease ftsH [Legionella pneumophila str. Paris]
 gi|53755456|emb|CAH16952.1| Cell division protease ftsH [Legionella pneumophila str. Lens]
          Length = 639

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 188 IPRGVLLVGSPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244


>gi|148545915|ref|YP_001266017.1| ATPase [Pseudomonas putida F1]
 gi|148509973|gb|ABQ76833.1| ATPase AAA-2 domain protein [Pseudomonas putida F1]
          Length = 854

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHQRVIGQSEAVTAVANAVR-RSR-----AGLSDPNRPSGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|46124877|ref|XP_386992.1| hypothetical protein FG06816.1 [Gibberella zeae PH-1]
          Length = 885

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL
Sbjct: 434 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGPSR-VRDL 486


>gi|325109333|ref|YP_004270401.1| ATPase AAA [Planctomyces brasiliensis DSM 5305]
 gi|324969601|gb|ADY60379.1| ATPase AAA-2 domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 849

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAI 69
           E+  EL R +I Q +A + V+ A+R R R     + L+D   P  + L  GPTGVGKT +
Sbjct: 512 EMEEELHRRVISQDEAIKQVSKAVR-RSR-----SGLKDPKRPTGVFLFAGPTGVGKTLL 565

Query: 70  SRRLARLAGA---PFIKVEVTKFTEIGYVGR 97
           ++ LA          I+++++++ E   + R
Sbjct: 566 AKTLAEFMFGDEEALIQIDMSEYQEKHNISR 596


>gi|302344661|ref|YP_003809190.1| ATP-dependent chaperone ClpB [Desulfarculus baarsii DSM 2075]
 gi|301641274|gb|ADK86596.1| ATP-dependent chaperone ClpB [Desulfarculus baarsii DSM 2075]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ+DA  AVA A+R R R     + L+D   P  + + +GPTGVGKT ++R LA  
Sbjct: 571 KRVVGQKDAVEAVANAVR-RAR-----SGLQDPNRPVGSFIFMGPTGVGKTELARALAEF 624

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                   I++++++F E   V R
Sbjct: 625 MFDDEQAMIRLDMSEFMEKHSVSR 648


>gi|297843542|ref|XP_002889652.1| FTSH10 [Arabidopsis lyrata subsp. lyrata]
 gi|297335494|gb|EFH65911.1| FTSH10 [Arabidopsis lyrata subsp. lyrata]
          Length = 813

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRD 105
           +PK  LLVGP G GKT +++  A  +  PF+ +  + F E+ +VG      RN+ Q  R 
Sbjct: 359 IPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQ 417

Query: 106 LVDVAINI 113
                I I
Sbjct: 418 CAPSIIFI 425


>gi|291460601|ref|ZP_06599991.1| ATP-dependent chaperone protein ClpB [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416792|gb|EFE90511.1| ATP-dependent chaperone protein ClpB [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 868

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 9/64 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
            EL + +IGQ DA R V+ A LR++       A ++D   P  + L +GPTGVGKT +++
Sbjct: 566 QELHKRLIGQDDAVRRVSDAILRSK-------AGIKDPTKPIGSFLFLGPTGVGKTELAK 618

Query: 72  RLAR 75
            LA+
Sbjct: 619 ALAQ 622


>gi|197303865|ref|ZP_03168900.1| hypothetical protein RUMLAC_02603 [Ruminococcus lactaris ATCC
           29176]
 gi|197297048|gb|EDY31613.1| hypothetical protein RUMLAC_02603 [Ruminococcus lactaris ATCC
           29176]
          Length = 812

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 21/97 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 508 LQKRVIGQDEAVSAVARAVK-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKALA 561

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
             L G     I+V+++++ E            GYVG 
Sbjct: 562 EALFGKEEAMIRVDMSEYMEKHSVSKMIGSPPGYVGH 598


>gi|170692320|ref|ZP_02883483.1| ATP-dependent chaperone ClpB [Burkholderia graminis C4D1M]
 gi|170142750|gb|EDT10915.1| ATP-dependent chaperone ClpB [Burkholderia graminis C4D1M]
          Length = 865

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEDKLHERVIGQDEAISAVADAIR-RSR-----AGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97
            + LA     +    I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|167748025|ref|ZP_02420152.1| hypothetical protein ANACAC_02763 [Anaerostipes caccae DSM 14662]
 gi|167652543|gb|EDR96672.1| hypothetical protein ANACAC_02763 [Anaerostipes caccae DSM 14662]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ  A  AVA A++ R R       L+D   P  + L +GPTGVGKT +S+ LA
Sbjct: 514 LHKQVIGQDKAVEAVARAIK-RSR-----VGLKDPKRPIGSFLFLGPTGVGKTELSKSLA 567

Query: 75  RLAGA---PFIKVEVTKFTE-----------IGYVG 96
           +         I+V+++++ E            GYVG
Sbjct: 568 KAMFGREEDLIRVDMSEYMEKHSVSKIIGSPPGYVG 603


>gi|161615589|ref|YP_001589554.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364953|gb|ABX68721.1| hypothetical protein SPAB_03370 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 527 QELHSRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 580

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 581 LANFMFDSDDAMVRIDMSEFMEKHSVSRLV 610


>gi|148361108|ref|YP_001252315.1| cell division protein FtsH [Legionella pneumophila str. Corby]
 gi|296108438|ref|YP_003620139.1| cell division protease FtsH [Legionella pneumophila 2300/99 Alcoy]
 gi|148282881|gb|ABQ56969.1| cell division protein FtsH [Legionella pneumophila str. Corby]
 gi|295650340|gb|ADG26187.1| cell division protease FtsH [Legionella pneumophila 2300/99 Alcoy]
          Length = 636

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVG  G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 185 IPRGVLLVGSPGTGKTLLARAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241


>gi|125623476|ref|YP_001031959.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124492284|emb|CAL97216.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070224|gb|ADJ59624.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|326796211|ref|YP_004314031.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
 gi|326546975|gb|ADZ92195.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHESVIGQDEAVNAVSNAVR-RSR-----SGLADPKRPNGSFLFLGPTGVGKTELCKSLA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
           +         ++V++++F E   V R
Sbjct: 622 KFLFDTEQAMVRVDMSEFMEKHSVAR 647


>gi|322696275|gb|EFY88070.1| matrix AAA protease MAP-1 [Metarhizium acridum CQMa 102]
          Length = 904

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL
Sbjct: 445 IPRGAILAGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEM-FVGVGPSR-VRDL 497


>gi|307149782|ref|YP_003890825.1| AAA ATPase central domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306986582|gb|ADN18460.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7822]
          Length = 509

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 3   LTFNFSPREIVSE---LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           L   F P   VS+   LDR  +G +     VA+    + R   LP       +PK  LL 
Sbjct: 213 LGLEFLPLPDVSDFGGLDRLKLGIEQ----VALDYSYKAREYNLP-------LPKGWLLA 261

Query: 60  GPTGVGKTAISRRLARLAGAPFIK--VEVTKFTEIGYVGRNVEQI 102
           GP G GKT  ++ +AR  G P I   V++ K     Y+ R +++I
Sbjct: 262 GPPGTGKTFAAKVVARRLGFPLISVGVDLVKSKGAAYLKRILQRI 306


>gi|296217139|ref|XP_002754880.1| PREDICTED: caseinolytic peptidase B protein homolog isoform 3
           [Callithrix jacchus]
          Length = 562

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 27/100 (27%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 198 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 248

Query: 73  LARL----AGAPFIKVEVTKFTE-----------IGYVGR 97
            A+     A   FI++++++F E            GYVG 
Sbjct: 249 TAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGH 288


>gi|290562333|gb|ADD38563.1| 26S protease regulatory subunit 7 [Lepeophtheirus salmonis]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 210 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 265


>gi|209884901|ref|YP_002288758.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Oligotropha
           carboxidovorans OM5]
 gi|209873097|gb|ACI92893.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Oligotropha
           carboxidovorans OM5]
          Length = 793

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           + + + L R + GQ  A  A++ +++         A LR+   P    L  GPTGVGKT 
Sbjct: 458 KHLEATLKRTVFGQDKAIEALSASIKLAR------AGLREPEKPIGCYLFSGPTGVGKTE 511

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 512 VAKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 568


>gi|116834075|gb|ABK29903.1| HslU [Buchnera aphidicola]
          Length = 43

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++EDISF+ASD   KT+ I+ +YV  H+    S  D+  FIL
Sbjct: 1   KLMEDISFNASDHHGKTIKINEQYVGEHLDQLVSNEDLSRFIL 43


>gi|124512870|ref|XP_001349791.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
           3D7]
 gi|23615208|emb|CAD52198.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
           3D7]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      F+++ V+   +  Y+G +  +IIR++ + A
Sbjct: 171 PKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVD-KYIGESA-RIIREMFNYA 226


>gi|24372780|ref|NP_716822.1| cell division protein FtsH [Shewanella oneidensis MR-1]
 gi|24346861|gb|AAN54267.1|AE015563_7 cell division protein FtsH [Shewanella oneidensis MR-1]
          Length = 649

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +L+VGP G GKT +++ +A  +  PF  +  + F E+ +VG    + +RD+ + A
Sbjct: 186 IPTGVLMVGPPGTGKTLLAKAIAGESKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242


>gi|50122855|ref|YP_052022.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|61214081|sp|Q6D066|MIAA_ERWCT RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|49613381|emb|CAG76832.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D+ +  +P  I ++GPT  GKTA++  L        I V+   + K  +IG    + ++
Sbjct: 2   SDVENASLPPAIFIMGPTASGKTALAMTLREYLPVELISVDSALIYKDMDIGTAKPSADE 61

Query: 102 IIR------DLVDVAINI-VRESRRDEVREQASINAEERILDALVGKT 142
           + R      D++D   +    + RRD +RE A I A  RI   LVG T
Sbjct: 62  LARAPHRLIDILDPTESYSAADFRRDALREMADITAAGRI-PLLVGGT 108


>gi|325567772|ref|ZP_08144383.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158545|gb|EGC70692.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 829

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A +AVA ++R R R     + L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 519 LHQRVVGQEEAVKAVARSIR-RAR-----SGLKDPNRPIGSFMFLGPTGVGKTELAKALA 572

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             + G+    ++V++++F E            GYVG
Sbjct: 573 EAMFGSEDALVRVDMSEFMEKYSTSRLIGSPPGYVG 608


>gi|308068639|ref|YP_003870244.1| Competence protein comM [Paenibacillus polymyxa E681]
 gi|305857918|gb|ADM69706.1| Competence protein comM [Paenibacillus polymyxa E681]
          Length = 539

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)

Query: 11  EIVSELDRY--IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           EI S ++ Y  ++GQ  AKRA+ IA                     NILL+GP G GKT 
Sbjct: 210 EITSNMEDYSDVLGQLHAKRALVIAAAGM----------------HNILLMGPPGAGKTM 253

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI 92
           + RRL  +   P  + E  + T++
Sbjct: 254 LIRRLPSIL-PPLTEKEALEVTKV 276


>gi|283834789|ref|ZP_06354530.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Citrobacter
           youngae ATCC 29220]
 gi|291069035|gb|EFE07144.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Citrobacter
           youngae ATCC 29220]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101
           +D R   +PK I L+GPT  GKTA++  L ++     I V+   + K  +IG    + E+
Sbjct: 2   SDTRKASLPKAIFLMGPTASGKTALAIELRKVLPVELISVDSALIYKGMDIGTAKPDAEE 61

Query: 102 I---------IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT 142
           +         IRD          + RRD + E A I A  RI   LVG T
Sbjct: 62  LQAAPHRLLDIRDPSQA--YSAADFRRDALAEMADITAAGRI-PLLVGGT 108


>gi|300861491|ref|ZP_07107575.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           faecalis TUSoD Ef11]
 gi|295114559|emb|CBL33196.1| ATPases with chaperone activity, ATP-binding subunit [Enterococcus
           sp. 7L76]
 gi|300848952|gb|EFK76705.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           faecalis TUSoD Ef11]
 gi|315143909|gb|EFT87925.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2141]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|225684059|gb|EEH22343.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb03]
          Length = 920

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 461 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 517


>gi|223041973|ref|ZP_03612157.1| chaperone ClpB [Actinobacillus minor 202]
 gi|223017230|gb|EEF15658.1| chaperone ClpB [Actinobacillus minor 202]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHTRVIGQNEAVEAVANAIR-RSR-----AGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|169806084|ref|XP_001827787.1| 19S-PA700 proteasome regulatory particle subunit Rpt6p-S8
           [Enterocytozoon bieneusi H348]
 gi|161779073|gb|EDQ31099.1| 19S-PA700 proteasome regulatory particle subunit Rpt6p-S8
           [Enterocytozoon bieneusi H348]
          Length = 391

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  ++  +  YVG    +++R+L  +A
Sbjct: 169 PKGVLLYGPPGTGKTLLARAVAHHTKCKFIRVSGSELVQ-KYVGEG-SRLVRELFIMA 224


>gi|153008374|ref|YP_001369589.1| ATPase [Ochrobactrum anthropi ATCC 49188]
 gi|151560262|gb|ABS13760.1| ATPase AAA-2 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 873

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ +A +A++ A+R R R     A L+D   P  + + +GPTGVGKT +++ L
Sbjct: 565 ELAKRVIGQGEAVQAISKAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 619 AAFLFQDDTAMVRIDMSEFMEKHSVSR 645


>gi|46109446|ref|XP_381781.1| hypothetical protein FG01605.1 [Gibberella zeae PH-1]
          Length = 389

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHTACKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|313635095|gb|EFS01443.1| negative regulator of genetic competence ClpC/MecB [Listeria
           seeligeri FSL N1-067]
          Length = 619

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|312880242|ref|ZP_07740042.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310783533|gb|EFQ23931.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 639

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+G  G GKT +SR +A  A  PF  +  + F E+ +VG    + +RDL + A
Sbjct: 188 VPRGVLLLGAPGTGKTLLSRAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 244


>gi|303390504|ref|XP_003073483.1| ATP-dependent 26S proteasome regulatory subunit 6 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302629|gb|ADM12123.1| ATP-dependent 26S proteasome regulatory subunit 6 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 387

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT + + +A    A FIKV  ++F +  Y+G    +++RD+  +A
Sbjct: 168 PQGVLLYGPPGTGKTMLVKAVANHTKATFIKVNGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|298715833|emb|CBJ28298.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 394

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R LA    A F+KV  +   +  Y+G +  +++R++   A
Sbjct: 172 PKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVD-KYIGESA-RVVREMFGYA 227


>gi|298292690|ref|YP_003694629.1| ATP-dependent chaperone ClpB [Starkeya novella DSM 506]
 gi|296929201|gb|ADH90010.1| ATP-dependent chaperone ClpB [Starkeya novella DSM 506]
          Length = 872

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A  AV+ A+R R R     A L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 572 LSKRVIGQKEAVEAVSTAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELTKALA 625

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     ++++++++ E   V R
Sbjct: 626 SFLFDDDTALVRIDMSEYMEKHAVAR 651


>gi|257868131|ref|ZP_05647784.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC30]
 gi|257874594|ref|ZP_05654247.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC10]
 gi|257877740|ref|ZP_05657393.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC20]
 gi|257802245|gb|EEV31117.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC30]
 gi|257808758|gb|EEV37580.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC10]
 gi|257811906|gb|EEV40726.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC20]
          Length = 829

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 21/96 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ++A +AVA ++R R R     + L+D   P  + + +GPTGVGKT +++ LA
Sbjct: 519 LHQRVVGQEEAVKAVARSIR-RAR-----SGLKDPNRPIGSFMFLGPTGVGKTELAKALA 572

Query: 75  R-LAGA--PFIKVEVTKFTE-----------IGYVG 96
             + G+    ++V++++F E            GYVG
Sbjct: 573 EAMFGSEDALVRVDMSEFMEKYSTSRLIGSPPGYVG 608


>gi|302547999|ref|ZP_07300341.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465617|gb|EFL28710.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 845

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 12/90 (13%)

Query: 15  ELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72
            L + +IGQ++A  AV+ A LR+R       A L D   P  + L +GPTGVGKT ++R 
Sbjct: 537 HLHKRVIGQEEAVAAVSDAVLRSR-------AGLADPHRPSGSFLFLGPTGVGKTELARA 589

Query: 73  LAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99
           LA  L G+    I+++++++ E   V R V
Sbjct: 590 LAEALFGSEDRMIRLDMSEYQEKHTVSRLV 619


>gi|295401948|ref|ZP_06811911.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109233|ref|YP_003987549.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
 gi|294976078|gb|EFG51693.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214334|gb|ADP72938.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 812

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A +AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 508 LHSRVVGQDEAVKAVAKAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 561


>gi|261203869|ref|XP_002629148.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis SLH14081]
 gi|239586933|gb|EEQ69576.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis SLH14081]
 gi|327356146|gb|EGE85003.1| matrix AAA protease MAP-1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 910

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 451 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 507


>gi|229547888|ref|ZP_04436613.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis ATCC 29200]
 gi|229306909|gb|EEN72905.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis ATCC 29200]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|295664839|ref|XP_002792971.1| AAA ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226278492|gb|EEH34058.1| AAA ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 920

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 461 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 517


>gi|167856244|ref|ZP_02478978.1| chaperone ClpB [Haemophilus parasuis 29755]
 gi|167852631|gb|EDS23911.1| chaperone ClpB [Haemophilus parasuis 29755]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQSEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
                     +++++++F E   V R V
Sbjct: 620 NFLFDDQDAMVRIDMSEFMEKHSVSRLV 647


>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|46397658|sp|O74445|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
 gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe]
          Length = 388

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A   G  F+KV  +   +  Y+G +  +IIR++   A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVD-KYIGESA-RIIREMFGYA 221


>gi|148260817|ref|YP_001234944.1| ATPase [Acidiphilium cryptum JF-5]
 gi|146402498|gb|ABQ31025.1| ATPase AAA-2 domain protein [Acidiphilium cryptum JF-5]
          Length = 860

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A RAV+ A+R R R     A L+D   P  + L +GPTGVGKT   + L
Sbjct: 562 ELRKRVVGQEAALRAVSDAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTETCKAL 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEFLFDDERAMVRIDMSEFMEKHAVAR 642


>gi|238790743|ref|ZP_04634504.1| Chaperone protein clpB 1 [Yersinia frederiksenii ATCC 33641]
 gi|238721184|gb|EEQ12863.1| Chaperone protein clpB 1 [Yersinia frederiksenii ATCC 33641]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            +L + +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + 
Sbjct: 564 QDLHKRVIGQNEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKA 617

Query: 73  LARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           LA     +    +++++++F E   V R V
Sbjct: 618 LANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|332981035|ref|YP_004462476.1| ATPase AAA-2 domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332698713|gb|AEE95654.1| ATPase AAA-2 domain protein [Mahella australiensis 50-1 BON]
          Length = 815

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 507 LHERVIGQDEAVEAVAKAIR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 560


>gi|322385957|ref|ZP_08059597.1| ATP-dependent Clp protease [Streptococcus cristatus ATCC 51100]
 gi|321269940|gb|EFX52860.1| ATP-dependent Clp protease [Streptococcus cristatus ATCC 51100]
          Length = 757

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 21/156 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 446 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 498

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 499 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYEEAGQLTERV 550

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
             N    IL   V K A  +   +F + L DG ++D
Sbjct: 551 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTD 585


>gi|315150882|gb|EFT94898.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0012]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|313768010|ref|YP_004061441.1| hypothetical protein BpV1_011c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599617|gb|ADQ91638.1| hypothetical protein BpV1_011c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 687

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  LL G  G GKT ++R +A  +  PFI+   + F E+ +VG   ++ +RD+ ++A
Sbjct: 259 IPRGALLTGKPGTGKTLLARAIAGESSVPFIQCSGSSFVEM-FVGVGAKR-VRDIFELA 315


>gi|257125522|ref|YP_003163636.1| ATP-dependent metalloprotease FtsH [Leptotrichia buccalis C-1013-b]
 gi|310943136|sp|C7N914|FTSH_LEPBD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257049461|gb|ACV38645.1| ATP-dependent metalloprotease FtsH [Leptotrichia buccalis C-1013-b]
          Length = 768

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  +GA F  +  ++F E+ +VG    + +RDL + A
Sbjct: 230 VPKGVLLLGRPGTGKTLLAKAVAGESGASFFSISGSEFVEM-FVGVGASR-VRDLFEKA 286


>gi|239608836|gb|EEQ85823.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis ER-3]
          Length = 910

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+  +L GP G GKT +++  A  +G PF  V  ++F E+ +VG    + +RDL   A
Sbjct: 451 IPRGAILSGPPGTGKTLLAKATAGESGVPFYSVSGSEFVEM-FVGVGPSR-VRDLFATA 507


>gi|269215020|ref|ZP_06158987.1| chaperone protein ClpB [Neisseria lactamica ATCC 23970]
 gi|269208504|gb|EEZ74959.1| chaperone protein ClpB [Neisseria lactamica ATCC 23970]
          Length = 419

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 130 LHRRVVGQDEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 183

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 184 GFLFDSEDHLIRIDMSEYMEKHAVAR 209


>gi|242019682|ref|XP_002430288.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212515403|gb|EEB17550.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           PK +LL GP G GKT I++  A+ A   FI ++++  T+  Y
Sbjct: 123 PKGVLLHGPPGCGKTLIAKATAKEAKTSFINLDISILTDKWY 164


>gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6]
 gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6]
          Length = 781

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 11/86 (12%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +QD K AV   ++NR   +++   +R    PK +LL GP G GKT +++ +A  + A FI
Sbjct: 516 KQDLKEAVEWPIKNREMFERM--GIRP---PKGVLLFGPPGTGKTLLAKAVANESEANFI 570

Query: 83  KVEVTKFTEI--GYVGRNVEQIIRDL 106
            V   K  EI   +VG + E+ IR++
Sbjct: 571 SV---KGPEIFSKWVGES-EKAIREI 592



 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT +++ +A  AGA F  +     ++K+  +G    N+ +I  +  +
Sbjct: 211 PKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKY--VGETEENLRKIFEEAEE 268

Query: 109 VAINIVRESRRDEV---REQASINAEER-------ILDALVGKT-----ATSNTREVFRK 153
            + +I+     D V   R++AS   E R       +LD L G+      A +N  +    
Sbjct: 269 NSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDM 328

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR     D+E+ I + D
Sbjct: 329 ALRRPGRLDRELTIGIPD 346


>gi|21619335|gb|AAH31847.1| Nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 27/123 (21%)

Query: 15  ELDRYIIG----QQDAKRAVAIALRN-RWRRQQLPADLRDELM----------------- 52
           EL+ +I+     Q  AKR   + + N  W       D+RDEL+                 
Sbjct: 551 ELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLG 610

Query: 53  ---PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
              P  ILL GP G GKT +++ +A  +G  FI V+  +   + YVG + E+ +R +   
Sbjct: 611 LGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQR 668

Query: 110 AIN 112
           A N
Sbjct: 669 AKN 671



 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GKT ++  +A     P +KV   +   +  V    EQ +R+L D A++
Sbjct: 297 PRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEI--VSGVSGESEQKLRELFDQAVS 354

Query: 113 ----IVRESRRDEV---REQASINAEERILDALV 139
               IV     D +   RE AS + E RI+  L+
Sbjct: 355 NAPCIVFIDEIDAITPKREVASKDMERRIVAQLL 388


>gi|326404211|ref|YP_004284293.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
 gi|325051073|dbj|BAJ81411.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
          Length = 860

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ+ A RAV+ A+R R R     A L+D   P  + L +GPTGVGKT   + L
Sbjct: 562 ELRKRVVGQEAALRAVSDAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTETCKAL 615

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 616 AEFLFDDERAMVRIDMSEFMEKHAVAR 642


>gi|320581413|gb|EFW95634.1| 26S proteasome subunit Rpt3 [Pichia angusta DL-1]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +Q+ + AV + L      +Q+  D      P+ +LL GP G GKT + + +A  + A FI
Sbjct: 170 KQEIREAVELPLTQADLYKQIGID-----PPRGVLLYGPPGTGKTMLVKAVANSSTASFI 224

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +V  ++F +  Y+G    +++RD+  +A
Sbjct: 225 RVNGSEFVQ-KYLGEG-PRMVRDVFRLA 250


>gi|315126101|ref|YP_004068104.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas sp. SM9913]
 gi|315014615|gb|ADT67953.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas sp. SM9913]
          Length = 858

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT +++ L
Sbjct: 565 QLHNKVIGQDEAVVAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELTKAL 618

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGRNV 99
           A       +  +++++++F E   V R V
Sbjct: 619 AGYMFDTESAMVRIDMSEFMEKHSVARLV 647


>gi|307250341|ref|ZP_07532290.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254986|ref|ZP_07536804.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259422|ref|ZP_07541147.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306857616|gb|EFM89723.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861859|gb|EFM93835.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866358|gb|EFM98221.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|300120926|emb|CBK21168.2| unnamed protein product [Blastocystis hominis]
          Length = 458

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +I+R+L  +A
Sbjct: 206 PKGVLLYGPPGTGKTLSARAVANRTEATFIRVLGSELVQ-KYVGEGA-RIVRELFQLA 261


>gi|256760910|ref|ZP_05501490.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|307288063|ref|ZP_07568079.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0109]
 gi|256682161|gb|EEU21856.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|306500941|gb|EFM70256.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0109]
 gi|315163552|gb|EFU07569.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1302]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|229547309|ref|ZP_04436034.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX1322]
 gi|229307548|gb|EEN73535.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX1322]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|255077101|ref|XP_002502202.1| predicted protein [Micromonas sp. RCC299]
 gi|226517467|gb|ACO63460.1| predicted protein [Micromonas sp. RCC299]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT +++ +A    A FI+V  ++F +  Y+G    +++RD+  +A
Sbjct: 201 PRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256


>gi|219870451|ref|YP_002474826.1| ATP-dependant Clp protease subunit B [Haemophilus parasuis SH0165]
 gi|219690655|gb|ACL31878.1| ATP-dependent Clp protease chain B/ATPases with chaperone activity,
           ATP-binding subunit [Haemophilus parasuis SH0165]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQSEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
                     +++++++F E   V R V
Sbjct: 620 NFLFDDQDAMVRIDMSEFMEKHSVSRLV 647


>gi|197335143|ref|YP_002155324.1| ATP-dependent chaperone ClpB [Vibrio fischeri MJ11]
 gi|197316633|gb|ACH66080.1| ATP-dependent chaperone ClpB [Vibrio fischeri MJ11]
          Length = 861

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHHRVIGQAEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|167462307|ref|ZP_02327396.1| AAA ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384066|ref|ZP_08057787.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151239|gb|EFX44535.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 370

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQII 103
           P +IL  GP GVGKT +++ +A     P I ++++    + +G  G+N+++I+
Sbjct: 121 PNSILFYGPPGVGKTLLTKYVAHCLSLPLITLDLSSAISSYLGKTGQNLKKIL 173


>gi|167539916|ref|XP_001741415.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894117|gb|EDR22201.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 912

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K IL  GP G GKT +++ +A+ + A FI   ++   E  + G   E+ ++ L  +A  +
Sbjct: 626 KGILFFGPPGTGKTMLAKAVAKESKANFINASLSSL-ESKWFGE-AEKFVKALFSLAAKL 683

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
                         I  +E  +DAL+GK  + N  E  RK
Sbjct: 684 ----------SPCVIFIDE--VDALLGKRTSQNENETLRK 711


>gi|81362382|gb|ABB71587.1| 26S proteasome subunit ATPase 2 [Schistosoma mansoni]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 72  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 127


>gi|115970841|ref|XP_001190601.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 190 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 245


>gi|115948410|ref|XP_794594.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 185 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 240


>gi|328951491|ref|YP_004368826.1| ATP-dependent chaperone ClpB [Marinithermus hydrothermalis DSM
           14884]
 gi|328451815|gb|AEB12716.1| ATP-dependent chaperone ClpB [Marinithermus hydrothermalis DSM
           14884]
          Length = 855

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 556 ELRKRVVGQDEAIVAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTL 609

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A     +    +++++T++ E   V R
Sbjct: 610 AATLFDSEEAMVRIDMTEYMEKHAVAR 636


>gi|322819661|gb|EFZ26688.1| hypothetical protein TCSYLVIO_7124 [Trypanosoma cruzi]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           PK +LL GP G GKT ++R LA+  G  FI V+
Sbjct: 122 PKGVLLYGPPGTGKTLLARALAKELGCSFINVK 154


>gi|315032999|gb|EFT44931.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0017]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|313639760|gb|EFS04509.1| negative regulator of genetic competence ClpC/MecB [Listeria
           seeligeri FSL S4-171]
          Length = 783

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 468 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 521


>gi|307263757|ref|ZP_07545363.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870878|gb|EFN02616.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|296131785|ref|YP_003639032.1| ATPase AAA-2 domain protein [Thermincola sp. JR]
 gi|296030363|gb|ADG81131.1| ATPase AAA-2 domain protein [Thermincola potens JR]
          Length = 810

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A +AV+ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 507 LHQRVIGQDEAVKAVSRAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 560


>gi|257083072|ref|ZP_05577433.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
 gi|256991102|gb|EEU78404.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|257080312|ref|ZP_05574673.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
 gi|256988342|gb|EEU75644.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
          Length = 831

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|302907229|ref|XP_003049600.1| 26S proteasome regulatory complex, ATPase RPT6 [Nectria
           haematococca mpVI 77-13-4]
 gi|256730536|gb|EEU43887.1| 26S proteasome regulatory complex, ATPase RPT6 [Nectria
           haematococca mpVI 77-13-4]
          Length = 389

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHTACKFIRVSGSELVQ-KYIGEG-SRMVRELFVMA 221


>gi|255026741|ref|ZP_05298727.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
           J2-003]
          Length = 585

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ  A +AV++A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 505 LHERVIGQDAAVKAVSLAVR-RAR-----AGLKDPKRPIGSFIFLGPTGVGKTELARALA 558


>gi|221199704|ref|ZP_03572747.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
 gi|221208691|ref|ZP_03581691.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|221215538|ref|ZP_03588501.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221164526|gb|EED97009.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221171502|gb|EEE03949.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|221179943|gb|EEE12347.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
          Length = 326

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 12/71 (16%)

Query: 25  DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           D ++ VA+ L           D R ELMP  ILL+GP G+GKT  ++ LA++ G  +  V
Sbjct: 80  DVRKQVALCLET---------DDRLELMP--ILLLGPPGIGKTHFAKALAQMLGTAYHYV 128

Query: 85  EVTKFTEIGYV 95
            ++  T  G++
Sbjct: 129 PMSSLTA-GWI 138


>gi|163735915|ref|ZP_02143343.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           litoralis Och 149]
 gi|161390851|gb|EDQ15192.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           litoralis Och 149]
          Length = 872

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           +L   +IGQ+ A RA++ A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 564 QLHGRVIGQEPAVRAISNAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 617

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A          +++++++F E   V R
Sbjct: 618 AEFLFDDDNAMVRIDMSEFMEKHAVSR 644


>gi|149046585|gb|EDL99410.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_a [Rattus norvegicus]
          Length = 261

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 72  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 127


>gi|167035355|ref|YP_001670586.1| ATP-dependent protease La [Pseudomonas putida GB-1]
 gi|166861843|gb|ABZ00251.1| ATP-dependent protease La [Pseudomonas putida GB-1]
          Length = 805

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 16  LDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           LD+Y  G  D K R +       W+          E+    +LLVGP GVGKT+I + +A
Sbjct: 355 LDQYHAGLDDIKERILEFLAVGAWK---------GEISGSIVLLVGPPGVGKTSIGKSIA 405

Query: 75  RLAGAPFIKVEVTKF---TEIG-----YVGRNVEQIIRDLVDVAI 111
              G PF +  V       EI      Y+G    ++++ L DV +
Sbjct: 406 ESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEV 450


>gi|114567873|ref|YP_755027.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338808|gb|ABI69656.1| ATPases with chaperone activity, ATP-binding subunit
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 828

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A +AV+ A+R R R     A L++   P  + + +GPTGVGKT ++R LA
Sbjct: 524 LHQRVIGQEEAVKAVSRAVR-RAR-----AGLKNPKRPIGSFVFLGPTGVGKTELARSLA 577

Query: 75  R-LAGA--PFIKVEVTKFTEIGYVGRNV 99
             + G+    I+++++++ E   V R +
Sbjct: 578 EAMFGSEDAIIRLDMSEYMEKHAVSRMI 605


>gi|107023980|ref|YP_622307.1| ATPase AAA [Burkholderia cenocepacia AU 1054]
 gi|105894169|gb|ABF77334.1| AAA ATPase, central region [Burkholderia cenocepacia AU 1054]
          Length = 336

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V ++  T  G++
Sbjct: 104 RLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYVPMSSLTA-GWI 148


>gi|4103472|gb|AAD01783.1| ClpC [Lactococcus lactis subsp. cremoris MG1363]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL + ++GQ++A  AV+ A+R   R +   AD R  +   + + +GPTGVGKT +++ LA
Sbjct: 514 ELHKRVVGQEEAISAVSRAIR---RARSGVADSRRPM--GSFMFLGPTGVGKTELAKALA 568

Query: 75  -RLAGAP--FIKVEVTKFTE-----------IGYVG 96
             + G+    I+V++++F E            GYVG
Sbjct: 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVG 604


>gi|325697082|gb|EGD38969.1| ATP-dependent Clp protease [Streptococcus sanguinis SK160]
          Length = 721

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 21/156 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 409 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S++LA  L G+    I+ +++++ E   V +        LV      V      ++ E+ 
Sbjct: 462 SKQLAIELFGSADSMIRFDMSEYMEKHSVAK--------LVGAPPGYVGYDEAGQLTERV 513

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
             N    IL   V K A  +   +F + L DG ++D
Sbjct: 514 RRNPYSLILLDEVEK-AHPDVMHMFLQVLDDGRLTD 548


>gi|313236497|emb|CBY11812.1| unnamed protein product [Oikopleura dioica]
          Length = 458

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL-ARLAG 78
           +IG Q AK  +   L     R  L   +R    PK +LL GP G GKT +++ L A +  
Sbjct: 188 VIGHQQAKSTLKEMLVLPAMRPDLFTGIRAP--PKGLLLYGPPGNGKTLLAKALAAEMPD 245

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   +VG   E+++R L  +A
Sbjct: 246 AKFFNISASSLTS-KWVGEG-EKMVRALFSIA 275


>gi|307257140|ref|ZP_07538912.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864302|gb|EFM96213.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|303250165|ref|ZP_07336367.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252723|ref|ZP_07534614.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651228|gb|EFL81382.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859755|gb|EFM91777.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|301062800|ref|ZP_07203400.1| ATPase, AAA family [delta proteobacterium NaphS2]
 gi|300443097|gb|EFK07262.1| ATPase, AAA family [delta proteobacterium NaphS2]
          Length = 338

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQQ A  AVA A+R R R     + L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 227 LSQRVVGQQKAIDAVANAVR-RAR-----SGLQDPNRPIGSFIFLGPTGVGKTELARTLA 280

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
           +         ++V+++++ E   V R
Sbjct: 281 QFLFDDEQYMVRVDMSEYMEKHSVAR 306


>gi|296876945|ref|ZP_06900990.1| ATP-dependent Clp protease [Streptococcus parasanguinis ATCC 15912]
 gi|296432076|gb|EFH17878.1| ATP-dependent Clp protease [Streptococcus parasanguinis ATCC 15912]
          Length = 754

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 23/101 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           + S+L  ++IGQ DA   +A A+R NR         L     P  + L VGPTGVGKT +
Sbjct: 446 LASDLKAHVIGQDDAVDKIAKAIRRNR-------VGLGSPNRPIGSFLFVGPTGVGKTEL 498

Query: 70  SRRLA-RLAGAP--FIKVEVTKFTE-----------IGYVG 96
           S++LA  L G+    I+ +++++ E            GYVG
Sbjct: 499 SKQLAIELFGSADNMIRFDMSEYMEKHSVAKLVGAPPGYVG 539


>gi|255970546|ref|ZP_05421132.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
 gi|256617980|ref|ZP_05474826.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
 gi|256958535|ref|ZP_05562706.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
 gi|257078149|ref|ZP_05572510.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
 gi|257091493|ref|ZP_05585854.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257420295|ref|ZP_05597285.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|294780724|ref|ZP_06746084.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis PC1.1]
 gi|307270010|ref|ZP_07551335.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4248]
 gi|307274514|ref|ZP_07555695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2134]
 gi|312899758|ref|ZP_07759078.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0470]
 gi|312905574|ref|ZP_07764688.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0635]
 gi|312953740|ref|ZP_07772573.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0102]
 gi|255961564|gb|EET94040.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
 gi|256597507|gb|EEU16683.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
 gi|256949031|gb|EEU65663.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
 gi|256986179|gb|EEU73481.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
 gi|257000305|gb|EEU86825.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257162119|gb|EEU92079.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|294452164|gb|EFG20606.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis PC1.1]
 gi|306508786|gb|EFM77875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2134]
 gi|306513675|gb|EFM82282.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4248]
 gi|310628344|gb|EFQ11627.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0102]
 gi|310631303|gb|EFQ14586.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0635]
 gi|311293110|gb|EFQ71666.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0470]
 gi|315035218|gb|EFT47150.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0027]
 gi|315148386|gb|EFT92402.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4244]
 gi|315152751|gb|EFT96767.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0031]
 gi|315154576|gb|EFT98592.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0043]
 gi|315158946|gb|EFU02963.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0312]
 gi|315162279|gb|EFU06296.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0645]
 gi|315171228|gb|EFU15245.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1342]
 gi|315172856|gb|EFU16873.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1346]
 gi|315576520|gb|EFU88711.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0630]
 gi|327536383|gb|AEA95217.1| ATPase/chaperone ClpC, probable specificity factor for ClpP
           protease [Enterococcus faecalis OG1RF]
          Length = 831

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|251783432|ref|YP_002997737.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392064|dbj|BAH82523.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 814

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA  A++ A+R    R Q  + +R    P  + + +GPTGVGKT +++ L
Sbjct: 513 ELHKRVIGQEDAVSAISRAIR----RNQ--SGIRTGKRPIGSFMFLGPTGVGKTELAKAL 566

Query: 74  ARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           A +     +  I+ +++++ E            GYVG
Sbjct: 567 AEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVG 603


>gi|170048030|ref|XP_001851503.1| midasin [Culex quinquefasciatus]
 gi|167870254|gb|EDS33637.1| midasin [Culex quinquefasciatus]
          Length = 5052

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 52   MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
            + K ILL GP GVGKT++   LAR AG   +++ + + T++ 
Sbjct: 1779 LDKAILLEGPPGVGKTSLVENLARAAGFAIVRINLCEHTDLA 1820


>gi|20086333|dbj|BAB88837.1| putative proteinase [Gluconacetobacter xylinus]
          Length = 460

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 45  ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A LRD   P  N L  GPTGVGKT ++++LA   G   I+ +++++ E
Sbjct: 387 AGLRDPEKPIGNYLFSGPTGVGKTEVAKQLAATLGIELIRFDMSEYME 434


>gi|29377725|ref|NP_816879.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Enterococcus
           faecalis V583]
 gi|227517135|ref|ZP_03947184.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX0104]
 gi|227555222|ref|ZP_03985269.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis HH22]
 gi|257088425|ref|ZP_05582786.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
 gi|257418098|ref|ZP_05595092.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
 gi|29345193|gb|AAO82949.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Enterococcus
           faecalis V583]
 gi|227075415|gb|EEI13378.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX0104]
 gi|227175651|gb|EEI56623.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis HH22]
 gi|256996455|gb|EEU83757.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
 gi|257159926|gb|EEU89886.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
 gi|315028021|gb|EFT39953.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2137]
 gi|315575413|gb|EFU87604.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0309B]
 gi|315580852|gb|EFU93043.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0309A]
          Length = 831

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|283436222|ref|NP_001164006.1| ATPase family AAA domain-containing protein 3A isoform 2 [Homo
           sapiens]
 gi|7022907|dbj|BAA91764.1| unnamed protein product [Homo sapiens]
 gi|21620024|gb|AAH33109.1| ATAD3A protein [Homo sapiens]
 gi|39645574|gb|AAH63607.1| ATAD3A protein [Homo sapiens]
 gi|56207196|emb|CAI22955.1| ATPase family, AAA domain containing 3A [Homo sapiens]
 gi|119576591|gb|EAW56187.1| ATPase family, AAA domain containing 3A, isoform CRA_b [Homo
           sapiens]
 gi|270356518|gb|ACZ80514.1| AAA domain containing 3A protein [Homo sapiens]
          Length = 586

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +AIA RN           ++  + +NIL+ GP G GKT  +++LA  +G  +    + 
Sbjct: 329 RDIAIATRN---------TKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYA---IM 376

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRR------DEVREQASINAEERILDALVGK 141
              ++  +GR     +  L D A      SRR      DE              DA + K
Sbjct: 377 TGGDVAPMGREGVTAMHKLFDWANT----SRRGLLLFVDEA-------------DAFLRK 419

Query: 142 TATSNTREVFRKKL-----RDGEISDK-----------EIDIEVADTSSDISNFDIPG 183
            AT    E  R  L     R G+ S+K           + D  + D  +++ +FD+PG
Sbjct: 420 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPG 477


>gi|331086971|ref|ZP_08336046.1| hypothetical protein HMPREF0987_02349 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409421|gb|EGG88864.1| hypothetical protein HMPREF0987_02349 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 814

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++   L + +IGQ++A  AVA A++ R R       L+    P  + L +GPTGVGKT 
Sbjct: 502 RKLEQTLQKRVIGQEEAVTAVAKAVK-RGR-----VGLKSPNRPIGSFLFLGPTGVGKTE 555

Query: 69  ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97
           +S+ LA  L G     I+V+++++ E            GYVG 
Sbjct: 556 LSKALAEALFGQEDAMIRVDMSEYMEKHSVSKMIGSPPGYVGH 598


>gi|323358231|ref|YP_004224627.1| ATPase [Microbacterium testaceum StLB037]
 gi|323274602|dbj|BAJ74747.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 735

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA +AV+ A+R R R     A + D   P  + L +GPTGVGKT +++ L
Sbjct: 420 ELGKRLIGQKDAVKAVSDAVR-RSR-----AGISDPNRPVGSFLFLGPTGVGKTELAKSL 473

Query: 74  A 74
           A
Sbjct: 474 A 474


>gi|291522889|emb|CBK81182.1| ATPase family associated with various cellular activities (AAA)
          [Coprococcus catus GD/7]
          Length = 512

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
          ILL+GP G+GKTAI  ++AR  G   +   +T  T    +G
Sbjct: 36 ILLIGPPGIGKTAIMSQVARECGVALVSYTITHHTRQSAIG 76


>gi|256960597|ref|ZP_05564768.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
 gi|293384400|ref|ZP_06630281.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis R712]
 gi|293389786|ref|ZP_06634227.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis S613]
 gi|312906551|ref|ZP_07765552.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 512]
 gi|312910758|ref|ZP_07769596.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 516]
 gi|256951093|gb|EEU67725.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
 gi|291078248|gb|EFE15612.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis R712]
 gi|291080912|gb|EFE17875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis S613]
 gi|310627420|gb|EFQ10703.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 512]
 gi|311288957|gb|EFQ67513.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 516]
          Length = 831

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|284989236|ref|YP_003407790.1| ATPase AAA-2 domain-containing protein [Geodermatophilus obscurus
           DSM 43160]
 gi|284062481|gb|ADB73419.1| ATPase AAA-2 domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 841

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 7/63 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL + IIGQ++A ++V+ A+R R R     A L+D   P  + +  GP+GVGKT +++ L
Sbjct: 509 ELHKRIIGQEEAIKSVSQAIR-RTR-----AGLKDPRRPGGSFIFAGPSGVGKTELAKAL 562

Query: 74  ARL 76
           A+ 
Sbjct: 563 AQF 565


>gi|195437081|ref|XP_002066473.1| GK18304 [Drosophila willistoni]
 gi|194162558|gb|EDW77459.1| GK18304 [Drosophila willistoni]
          Length = 376

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           V+ LD  I   Q+ + +V + +R+R  ++R +L    R    PK +LL GP G GKT I+
Sbjct: 99  VAGLDAII---QELRESVVMPVRHRELFKRSKL---FR---APKGVLLHGPPGCGKTLIA 149

Query: 71  RRLARLAGAPFIKVEVTKFTEIGY 94
           + +A+ A   FI ++V   T+  Y
Sbjct: 150 KAIAKEADMRFINLDVGVLTDKWY 173


>gi|189485209|ref|YP_001956150.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|310946769|sp|B1GZK7|FTSH_UNCTG RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|170287168|dbj|BAG13689.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 631

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           +PK +LL G  G GKT +++ +A  A  PF     ++F E+ +VG    + +RDL D
Sbjct: 188 IPKGVLLFGSPGTGKTLLAKAVAGEANVPFFSSSGSEFVEM-FVGVGASR-VRDLFD 242


>gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5]
 gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5]
          Length = 784

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 11/86 (12%)

Query: 23  QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           +QD K AV   ++NR   +++   +R    PK +LL GP G GKT +++ +A  + A FI
Sbjct: 516 KQDLKEAVEWPIKNREMFERM--GIRP---PKGVLLFGPPGTGKTLLAKAVANESEANFI 570

Query: 83  KVEVTKFTEI--GYVGRNVEQIIRDL 106
            V   K  EI   +VG + E+ IR++
Sbjct: 571 SV---KGPEIFSKWVGES-EKAIREI 592



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT +++ +A  AGA F  +     ++K+  +G    N+ +I  +  +
Sbjct: 211 PKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKY--VGETEENLRKIFEEAEE 268

Query: 109 VAINIVRESRRDEV---REQASINAEER-------ILDALVGKT-----ATSNTREVFRK 153
            + +I+     D V   R++AS   E R       +LD L G+      A +N  +    
Sbjct: 269 NSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDM 328

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR     D+E+ I + D
Sbjct: 329 ALRRPGRLDRELTIGIPD 346


>gi|170723706|ref|YP_001751394.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
 gi|169761709|gb|ACA75025.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
          Length = 854

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A  AVA A+R R R     A L D   P  + + +GPTGVGKT + + LA
Sbjct: 566 LHQRVIGQHEAVTAVANAVR-RSR-----AGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|156740924|ref|YP_001431053.1| ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156232252|gb|ABU57035.1| ATPase AAA-2 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 871

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ +A  AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R LA
Sbjct: 569 LHQRVVGQDEAVSAVANAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELARALA 622

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     ++++++++ E   V R
Sbjct: 623 EFLFDDEQAMVRIDMSEYMEKHTVAR 648


>gi|219668839|ref|YP_002459274.1| ATP-dependent chaperone ClpB [Desulfitobacterium hafniense DCB-2]
 gi|219539099|gb|ACL20838.1| ATP-dependent chaperone ClpB [Desulfitobacterium hafniense DCB-2]
          Length = 864

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + + + +IGQ++A +AVA A+R R R     A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ARIHQRVIGQEEAVKAVADAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA          ++++++++ E   V R
Sbjct: 621 LAEFLFDDDQGIVRIDMSEYMEKHTVSR 648


>gi|75675887|ref|YP_318308.1| AAA ATPase [Nitrobacter winogradskyi Nb-255]
 gi|74420757|gb|ABA04956.1| AAA ATPase [Nitrobacter winogradskyi Nb-255]
          Length = 801

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 18/105 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A+  +++         A LR+   P  + L  GPTGVGKT ++++LA
Sbjct: 465 LKRVVFGQDRAIEALTASIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQLA 518

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
              G   ++ +++++ E            GYVG +   ++ D VD
Sbjct: 519 EALGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 563


>gi|54027376|ref|YP_121618.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
 gi|54018884|dbj|BAD60254.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
          Length = 853

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73
           EL R ++GQ++A +AV+ A+R R R     A + D   P  + + VGPTGVGKT +++ L
Sbjct: 569 ELGRRVVGQKEAVQAVSDAVR-RAR-----AGVADPNRPTGSFMFVGPTGVGKTELAKAL 622

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           A          +++++++++E   V R V
Sbjct: 623 ADFLFDDERAMVRIDMSEYSEKHAVARLV 651


>gi|71423868|ref|XP_812600.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877400|gb|EAN90749.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 339

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           PK +LL GP G GKT ++R LA+  G  FI V+
Sbjct: 122 PKGVLLYGPPGTGKTLLARALAKELGCSFINVK 154


>gi|323479192|gb|ADX78631.1| clpC ATPase [Enterococcus faecalis 62]
          Length = 831

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|322704317|gb|EFY95913.1| 26S protease regulatory subunit 8 [Metarhizium anisopliae ARSEF 23]
          Length = 389

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A      FI+V  ++  +  Y+G    +++R+L  +A
Sbjct: 166 PKGVLLYGPPGTGKTLLARAVAHHTACKFIRVSGSELVQ-KYIGEG-SRMVRELFIMA 221


>gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
 gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
          Length = 744

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +P+ ILL GP G GKT I R  A   G PFI++
Sbjct: 203 IPRGILLHGPPGCGKTVICRAFAAELGVPFIEI 235


>gi|307248109|ref|ZP_07530137.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855286|gb|EFM87461.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 864

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 573 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 626

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 627 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 654


>gi|303253337|ref|ZP_07339486.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648019|gb|EFL78226.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|226471212|emb|CAX70687.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 296

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R+L ++A
Sbjct: 72  PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFELA 127


>gi|255974129|ref|ZP_05424715.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T2]
 gi|307283899|ref|ZP_07564072.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0860]
 gi|255967001|gb|EET97623.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T2]
 gi|306503549|gb|EFM72796.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0860]
 gi|315167028|gb|EFU11045.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1341]
          Length = 831

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R R R     + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR-RAR-----SGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVG 96
           ++ LA  + G+    I+V++++F E            GYVG
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVG 605


>gi|224369761|ref|YP_002603925.1| ClpA [Desulfobacterium autotrophicum HRM2]
 gi|223692478|gb|ACN15761.1| ClpA [Desulfobacterium autotrophicum HRM2]
          Length = 749

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L++ I GQ  A   +  +++ R R     A L     P  + L  GPTGVGKT +
Sbjct: 452 QLSTKLEQTIFGQDHAIETLTTSIK-RSR-----AGLSSPGRPIGSFLFTGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA   G  F++ +++++ E   V R
Sbjct: 506 AKQLAANLGIEFLRFDMSEYMEKHTVSR 533


>gi|193786342|dbj|BAG51625.1| unnamed protein product [Homo sapiens]
          Length = 507

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +AIA RN           ++  + +NIL+ GP G GKT  +++LA  +G  +    + 
Sbjct: 250 RDIAIATRN---------TKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYA---IM 297

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRR------DEVREQASINAEERILDALVGK 141
              ++  +GR     +  L D A      SRR      DE              DA + K
Sbjct: 298 TGGDVAPMGREGVTAMHKLFDWANT----SRRGLLLFVDEA-------------DAFLRK 340

Query: 142 TATSNTREVFRKKL-----RDGEISDK-----------EIDIEVADTSSDISNFDIPG 183
            AT    E  R  L     R G+ S+K           + D  + D  +++ +FD+PG
Sbjct: 341 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPG 398


>gi|168023113|ref|XP_001764083.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684822|gb|EDQ71222.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 802

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R   +P  ILL G  G GKT +++ +A  AG  F  +  ++F EI YVG
Sbjct: 364 RGSKIPAGILLCGEPGTGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 411


>gi|116691067|ref|YP_836690.1| ATPase central domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116649156|gb|ABK09797.1| AAA ATPase, central domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 326

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V ++  T  G++
Sbjct: 94  RLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYVPMSSLTA-GWI 138


>gi|33468981|ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus]
 gi|32699478|sp|Q9DBY8|NVL_MOUSE RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|12836020|dbj|BAB23464.1| unnamed protein product [Mus musculus]
 gi|74150277|dbj|BAE24409.1| unnamed protein product [Mus musculus]
 gi|148681184|gb|EDL13131.1| nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 27/123 (21%)

Query: 15  ELDRYIIG----QQDAKRAVAIALRN-RWRRQQLPADLRDELM----------------- 52
           EL+ +I+     Q  AKR   + + N  W       D+RDEL+                 
Sbjct: 551 ELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLG 610

Query: 53  ---PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
              P  ILL GP G GKT +++ +A  +G  FI V+  +   + YVG + E+ +R +   
Sbjct: 611 LGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQR 668

Query: 110 AIN 112
           A N
Sbjct: 669 AKN 671



 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           P+ +LL GP G GKT ++  +A     P +KV   +   +  V    EQ +R+L D A++
Sbjct: 297 PRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEI--VSGVSGESEQKLRELFDQAVS 354

Query: 113 ----IVRESRRDEV---REQASINAEERILDALV 139
               IV     D +   RE AS + E RI+  L+
Sbjct: 355 NAPCIVFIDEIDAITPKREVASKDMERRIVAQLL 388


>gi|332993402|gb|AEF03457.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Alteromonas
           sp. SN2]
          Length = 758

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT ++++LA++ G   ++ +++++ E   V R
Sbjct: 491 SFLFAGPTGVGKTEVTQQLAKIMGVELVRFDMSEYMERHAVSR 533


>gi|323128182|gb|ADX25479.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 814

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 21/97 (21%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ+DA  A++ A+R    R Q  + +R    P  + + +GPTGVGKT +++ L
Sbjct: 513 ELHKRVIGQEDAVSAISRAIR----RNQ--SGIRTGKRPIGSFMFLGPTGVGKTELAKAL 566

Query: 74  ARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           A +     +  I+ +++++ E            GYVG
Sbjct: 567 AEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVG 603


>gi|319638313|ref|ZP_07993076.1| chaperone ClpB [Neisseria mucosa C102]
 gi|317400586|gb|EFV81244.1| chaperone ClpB [Neisseria mucosa C102]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R ++GQ +A RAV+ A+R R R     + L D   P  + L +GPTGVGKT + + LA
Sbjct: 568 LHRRVVGQDEAVRAVSDAIR-RSR-----SGLADPNKPYGSFLFLGPTGVGKTELCKALA 621

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGR 97
                +    I+++++++ E   V R
Sbjct: 622 GFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|303390930|ref|XP_003073695.1| 26S proteasome regulatory subunit 6 [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302843|gb|ADM12335.1| 26S proteasome regulatory subunit 6 [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 387

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P+ +LL GP G GKT + + +A    A FIKV  ++F +  Y+G    +++RD+  +A
Sbjct: 168 PQGVLLYGPPGTGKTMLVKAVANHTKATFIKVNGSEFVQ-KYLGEG-PRMVRDVFRLA 223


>gi|300113414|ref|YP_003759989.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           watsonii C-113]
 gi|299539351|gb|ADJ27668.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosococcus
           watsonii C-113]
          Length = 753

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           + L R I GQ  A  A++ A++         + L D   P  + L  GPTGVGKT ++R+
Sbjct: 458 TNLKRVIFGQDKAIEALSAAIKMSR------SGLGDTDRPVGSFLFSGPTGVGKTEVTRQ 511

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGR 97
           LA +     I+ +++++ E   V R
Sbjct: 512 LAHILSIELIRFDMSEYMERHTVSR 536


>gi|291533975|emb|CBL07088.1| ATPases with chaperone activity, ATP-binding subunit [Megamonas
           hypermegale ART12/1]
          Length = 848

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           + + ++GQ +   AVA A+R R R     A L+D   P  + L +GPTGVGKT ++R LA
Sbjct: 526 IHKRVVGQNEGVNAVAKAIR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARSLA 579

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  I+ +++++ E   V R
Sbjct: 580 EAIFGDESAMIRFDMSEYMEKHTVSR 605


>gi|316933621|ref|YP_004108603.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris DX-1]
 gi|315601335|gb|ADU43870.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris DX-1]
          Length = 795

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A++ +++         A LR+   P    L  GPTGVGKT ++++LA
Sbjct: 464 LKRVVFGQDKAIEALSASIKLAR------AGLREPEKPIGCYLFSGPTGVGKTEVAKQLA 517

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114
              G   ++ +++++ E            GYVG +   ++ D VD   + V
Sbjct: 518 SSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 568


>gi|227537943|ref|ZP_03967992.1| ATPase with chaperone activity ATP-binding subunit
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242182|gb|EEI92197.1| ATPase with chaperone activity ATP-binding subunit
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 849

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL-- 76
           IIGQ DA + +  A+      Q+  A L+D   P  + + +GPTGVGKT +++ LAR   
Sbjct: 531 IIGQDDAVQKLVKAI------QRTRAGLKDPKKPIGSFIFLGPTGVGKTELAKELARFMF 584

Query: 77  -AGAPFIKVEVTKFTEIGYVGRNV 99
            +    I+++++++ E   V R V
Sbjct: 585 DSEDSLIQIDMSEYMEKFAVSRLV 608


>gi|170734401|ref|YP_001766348.1| ATPase central domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169817643|gb|ACA92226.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3]
          Length = 326

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           R ELMP  ILL+GP G+GKT  ++ LA+L G  +  V ++  T  G++
Sbjct: 94  RLELMP--ILLLGPPGIGKTHFAKALAQLLGTAYHYVPMSSLTA-GWI 138


>gi|74188805|dbj|BAE28128.1| unnamed protein product [Mus musculus]
          Length = 598

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L  +IIGQ+ A   V  A+R   N W          DE  P   L +G +G+GKT ++++
Sbjct: 234 LKEHIIGQESAIATVGAAIRRKENGW---------YDEEHPLVFLFLGSSGIGKTELAKQ 284

Query: 73  LARL----AGAPFIKVEVTKFTE 91
            A+     A   FI++++++F E
Sbjct: 285 TAKYMHKDAKKGFIRLDMSEFQE 307


>gi|89100727|ref|ZP_01173582.1| class III stress response-related ATPase [Bacillus sp. NRRL
           B-14911]
 gi|89084544|gb|EAR63690.1| class III stress response-related ATPase [Bacillus sp. NRRL
           B-14911]
          Length = 817

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A +A++ A+R R R     A L+D   P  + + +GPTGVGKT ++R LA
Sbjct: 506 LHSRVIGQEEAVKAISKAVR-RAR-----AGLKDPKRPIGSFVFLGPTGVGKTELARALA 559


>gi|319943320|ref|ZP_08017603.1| chaperone protein ClpB [Lautropia mirabilis ATCC 51599]
 gi|319743862|gb|EFV96266.1| chaperone protein ClpB [Lautropia mirabilis ATCC 51599]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A   V+ A+R R R     A L D   P  + L +GPTGVGKT + + L
Sbjct: 579 ELHKRVVGQDEAVTLVSDAIR-RSR-----AGLADPNRPWGSFLFLGPTGVGKTELCKAL 632

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           AR    +    I++++++F E   V R
Sbjct: 633 ARFMFDSEDHLIRIDMSEFMEKHSVAR 659


>gi|315657837|ref|ZP_07910717.1| chaperone protein ClpB [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491634|gb|EFU81245.1| chaperone protein ClpB [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 918

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74
           L + +IGQ+DA RAV+ A+R R R     A + D   P  + L +GPTGVGKT +++ LA
Sbjct: 603 LGQRLIGQKDAVRAVSNAVR-RAR-----AGVSDPNRPTGSFLFLGPTGVGKTELAKALA 656


>gi|307246005|ref|ZP_07528087.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852940|gb|EFM85163.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|302838606|ref|XP_002950861.1| hypothetical protein VOLCADRAFT_104868 [Volvox carteri f.
           nagariensis]
 gi|300263978|gb|EFJ48176.1| hypothetical protein VOLCADRAFT_104868 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL R IIGQ++A  AVA A+      Q+  AD+ D   P  + + +GPTGVGKT +++ L
Sbjct: 647 ELHRRIIGQEEAVDAVAEAV------QRSRADVADLNGPIASFMFLGPTGVGKTELAKAL 700

Query: 74  A 74
           A
Sbjct: 701 A 701


>gi|260889221|ref|ZP_05900484.1| cell division protein FtsH [Leptotrichia hofstadii F0254]
 gi|260861281|gb|EEX75781.1| cell division protein FtsH [Leptotrichia hofstadii F0254]
          Length = 627

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  +GA F  +  ++F E+ +VG    + +RDL + A
Sbjct: 76  VPKGVLLLGRPGTGKTLLAKAVAGESGASFFSISGSEFVEM-FVGVGASR-VRDLFEKA 132


>gi|255074337|ref|XP_002500843.1| predicted protein [Micromonas sp. RCC299]
 gi|226516106|gb|ACO62101.1| predicted protein [Micromonas sp. RCC299]
          Length = 818

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
           P+ +LL GP G GKT ++  +AR AG PF  +   +   +  V    E  IR L
Sbjct: 205 PRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAAPEI--VAGVSGESEAKIRQL 256


>gi|167625158|ref|YP_001675452.1| ATPase [Shewanella halifaxensis HAW-EB4]
 gi|167355180|gb|ABZ77793.1| ATPase AAA-2 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  +V+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVNSVSNAIR-RSR-----AGLSDPDRPIGSFLFLGPTGVGKTELCKALA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
           +      +  +++++++F E   V R V
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|167524855|ref|XP_001746763.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775033|gb|EDQ88659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 437

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK ILL GP G GKT  +R +A    A FI+V  ++  +  YVG    +++R++ ++A
Sbjct: 213 PKGILLYGPPGTGKTLCARAVANRTDAAFIRVIGSELVQ-KYVGEGA-RMVREIFELA 268


>gi|149411942|ref|XP_001511408.1| PREDICTED: similar to paired box 9 [Ornithorhynchus anatinus]
          Length = 749

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           +PK  LL+GP G GKT +++ +A  A  PF+ +  ++F E+
Sbjct: 303 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGSEFVEV 343


>gi|283436224|ref|NP_001164007.1| ATPase family AAA domain-containing protein 3A isoform 3 [Homo
           sapiens]
 gi|119576594|gb|EAW56190.1| ATPase family, AAA domain containing 3A, isoform CRA_e [Homo
           sapiens]
          Length = 507

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 51/178 (28%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +AIA RN           ++  + +NIL+ GP G GKT  +++LA  +G  +    + 
Sbjct: 250 RDIAIATRN---------TKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYA---IM 297

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRR------DEVREQASINAEERILDALVGK 141
              ++  +GR     +  L D A      SRR      DE              DA + K
Sbjct: 298 TGGDVAPMGREGVTAMHKLFDWANT----SRRGLLLFVDEA-------------DAFLRK 340

Query: 142 TATSNTREVFRKKL-----RDGEISDK-----------EIDIEVADTSSDISNFDIPG 183
            AT    E  R  L     R G+ S+K           + D  + D  +++ +FD+PG
Sbjct: 341 RATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPG 398


>gi|59711173|ref|YP_203949.1| protein disaggregation chaperone [Vibrio fischeri ES114]
 gi|59479274|gb|AAW85061.1| protein disaggregation chaperone [Vibrio fischeri ES114]
          Length = 861

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AV+ A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHHRVIGQAEAVEAVSNAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RL---AGAPFIKVEVTKFTEIGYVGRNV 99
                +    +++++++F E   V R V
Sbjct: 620 NFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|71279835|ref|YP_269594.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Colwellia
           psychrerythraea 34H]
 gi|71145575|gb|AAZ26048.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Colwellia
           psychrerythraea 34H]
          Length = 752

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + L  GPTGVGKT I+++LA++ G   ++ +++++ E   V R
Sbjct: 488 SFLFAGPTGVGKTEITQQLAKILGIELLRFDMSEYMEKHAVSR 530


>gi|70606761|ref|YP_255631.1| hypothetical protein Saci_0976 [Sulfolobus acidocaldarius DSM
          639]
 gi|68567409|gb|AAY80338.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 386

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 16/83 (19%)

Query: 9  PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
          P++ +  L    +G+++  R + +AL                L  ++++L+G  G  K+A
Sbjct: 14 PKKFLEMLSAPFVGREEEARVLTLAL----------------LSKEHVILIGEPGTAKSA 57

Query: 69 ISRRLARLAGAPFIKVEVTKFTE 91
          ++RR A L  A F    +TK+TE
Sbjct: 58 LARRAADLMSAKFFMYLLTKYTE 80


>gi|32035169|ref|ZP_00135209.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208559|ref|YP_001053784.1| chaperone ClpB [Actinobacillus pleuropneumoniae L20]
 gi|126097351|gb|ABN74179.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|307109661|gb|EFN57898.1| 26S protease regulatory subunit 7 [Chlorella variabilis]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL GP G GKT ++R +A    A FI+V  ++  +  YVG    +++R+L  +A
Sbjct: 198 PKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFQMA 253


>gi|302867374|ref|YP_003836011.1| ATPase AAA-2 domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|302570233|gb|ADL46435.1| ATPase AAA-2 domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 849

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L   IIGQ DA  AVA A+R R R       L D   P  + L +GPTGVGKT ++R 
Sbjct: 530 GHLHEKIIGQDDAVSAVAEAVR-RSR-----TGLADPDRPMGSFLFLGPTGVGKTELARA 583

Query: 73  LAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99
           LA  L G     ++V++++F E   V R V
Sbjct: 584 LAEALFGEADRMVRVDMSEFQERHTVSRLV 613


>gi|294899875|ref|XP_002776787.1| hypothetical protein Pmar_PMAR017656 [Perkinsus marinus ATCC 50983]
 gi|239883988|gb|EER08603.1| hypothetical protein Pmar_PMAR017656 [Perkinsus marinus ATCC 50983]
          Length = 951

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 42  QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           + PA     L+PK  +LVGP G GKTA++  +A   G P + V
Sbjct: 668 KYPALCGAVLIPKGAMLVGPPGCGKTALAMSVAEECGLPVVAV 710


>gi|237736634|ref|ZP_04567115.1| cell division protein ftsH [Fusobacterium mortiferum ATCC 9817]
 gi|229420496|gb|EEO35543.1| cell division protein ftsH [Fusobacterium mortiferum ATCC 9817]
          Length = 647

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+G  G GKT +++ +A  A  PF  +  ++F E+ +VG    + +RDL + A
Sbjct: 219 IPKGVLLLGAPGTGKTLLAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASR-VRDLFNKA 275


>gi|226357380|ref|YP_002787120.1| cell division protease FtsH [Deinococcus deserti VCD115]
 gi|226319370|gb|ACO47366.1| putative cell division protease ftsH [Deinococcus deserti VCD115]
          Length = 626

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           LR+  R  QL A +     P  +LLVGP G GKT +++ +A  A  P+  +  + F E+ 
Sbjct: 176 LRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAGEARVPYFSLSGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    + +RDL + A
Sbjct: 230 FVGVGAAR-VRDLFEQA 245


>gi|254431115|ref|ZP_05044818.1| ATPase, AAA family protein [Cyanobium sp. PCC 7001]
 gi|197625568|gb|EDY38127.1| ATPase, AAA family protein [Cyanobium sp. PCC 7001]
          Length = 506

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GK+  ++ +A   G P ++++V +    G VG + E   RD++  A
Sbjct: 262 LPRGVLLVGPQGTGKSLTAKAIAHSWGMPLLRLDVGRLF-AGLVGAS-EARTRDMIQRA 318


>gi|165976510|ref|YP_001652103.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307261568|ref|ZP_07543236.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165876611|gb|ABY69659.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306868691|gb|EFN00500.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R R R     A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHSRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  R-LAGAP--FIKVEVTKFTEIGYVGRNV 99
             L   P   +++++++F E   V R V
Sbjct: 620 NFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|161507167|ref|YP_001577121.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           helveticus DPC 4571]
 gi|160348156|gb|ABX26830.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           helveticus DPC 4571]
          Length = 729

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALR-NR--WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R + ++L  ++IGQ  A   VA A+R NR  + +   P          + L VGPTGVGK
Sbjct: 427 RNLANDLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRPIG--------SFLFVGPTGVGK 478

Query: 67  TAISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           T ++++LA+ + G+    I+ +++++ E   V +        L+  A   V      ++ 
Sbjct: 479 TELAKQLAKQMFGSENAMIRFDMSEYMEQYSVSK--------LIGSAPGYVGYEEAGQLT 530

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           EQ   N    IL   + K A  +   +F + L DG ++D +
Sbjct: 531 EQVRHNPYSLILLDEIEK-AHPDVLNLFLQILDDGRLTDSQ 570


>gi|126738236|ref|ZP_01753957.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. SK209-2-6]
 gi|126720733|gb|EBA17438.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. SK209-2-6]
          Length = 872

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL   +IGQ     AVA A+R R R     A L DE  P  + L +GPTGVGKT +++ +
Sbjct: 564 ELHSRVIGQNAPVTAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 617

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  ++V++++F E   V R
Sbjct: 618 AEFLFDDDSAMVRVDMSEFMEKHAVAR 644


>gi|308808914|ref|XP_003081767.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
 gi|116060233|emb|CAL56292.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
          Length = 795

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103
           +PK +LL GP G GKT ++R +A  A  PF     ++F E  +G   + V Q+ 
Sbjct: 336 LPKGVLLTGPPGTGKTLLARAVAGEADVPFFYRSGSEFEEMFVGVGSKRVRQLF 389


Searching..................................................done


Results from round 2




>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040506|gb|ACT57302.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 437/437 (100%), Positives = 437/437 (100%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG
Sbjct: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD
Sbjct: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD
Sbjct: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM
Sbjct: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA
Sbjct: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL
Sbjct: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR
Sbjct: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420

Query: 421 LHIGDFPSETDMYHFIL 437
           LHIGDFPSETDMYHFIL
Sbjct: 421 LHIGDFPSETDMYHFIL 437


>gi|150398458|ref|YP_001328925.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium
           medicae WSM419]
 gi|166221612|sp|A6UEL0|HSLU_SINMW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150029973|gb|ABR62090.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           medicae WSM419]
          Length = 435

 Score =  537 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 288/434 (66%), Positives = 362/434 (83%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGVG
Sbjct: 3   SFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ DKEI+++VA+T +    F+IPG  
Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAETGNPGGAFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +  GR +KI+ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 183 GANIGVLNLSEMFGKAL-GGRTRKIKTTVKDSYALLVNDESDKLLDNEQIQREAVASAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVTLDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LNS V +IGARRLQTVMERVL+D+SF+A D   + V IDA+YVR+H+
Sbjct: 362 EDAIDALAEVAVQLNSNVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDADYVRVHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 422 GDLAANTDLSRYIL 435


>gi|15963811|ref|NP_384164.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
           1021]
 gi|307310999|ref|ZP_07590644.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti BL225C]
 gi|307321943|ref|ZP_07601325.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti AK83]
 gi|22653794|sp|Q92TA7|HSLU_RHIME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15072986|emb|CAC41445.1| Probable heat shock protein [Sinorhizobium meliloti 1021]
 gi|306892413|gb|EFN23217.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti AK83]
 gi|306899679|gb|EFN30306.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium
           meliloti BL225C]
          Length = 435

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 289/434 (66%), Positives = 360/434 (82%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ DKEI+++VA+  S    F+IPG  
Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAEAGSPGGAFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +  GR KK++ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 183 GANIGVLNLSEMFGKAL-GGRTKKVKTTVKDSYALLVNDESDKLLDNEQIQREAVAAAEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+D+SF+A D   + V IDAEYVR H+
Sbjct: 362 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDAEYVRRHV 421

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 422 GDLAANTDLSRYIL 435


>gi|86355717|ref|YP_467609.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42]
 gi|123513487|sp|Q2KE54|HSLU_RHIEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|86279819|gb|ABC88882.1| heat shock protease HslVU, subunit HslU chaperone protein
           (ATP-dependent protease ATP-binding subunit hslU)
           [Rhizobium etli CFN 42]
          Length = 435

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 302/435 (69%), Positives = 362/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I ++RE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLMREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRATE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDF
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETENLNLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRAGAAITIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|209551554|ref|YP_002283471.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|238065801|sp|B5ZV99|HSLU_RHILW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|209537310|gb|ACI57245.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 435

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 303/435 (69%), Positives = 362/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRTEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRESFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLNLEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|116249817|ref|YP_765655.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|166221599|sp|Q1MNB3|HSLU_RHIL3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115254465|emb|CAK05539.1| putative ATP-dependent heat shock protease component [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 435

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 303/435 (69%), Positives = 362/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYSDLIRDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRPLNKDDFRRILTETEASLIRQYRALMETESLSLEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|190889691|ref|YP_001976233.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CIAT 652]
 gi|238692525|sp|B3PWI7|HSLU_RHIE6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|190694970|gb|ACE89055.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CIAT 652]
          Length = 435

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 304/435 (69%), Positives = 363/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDF
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H
Sbjct: 361 TEDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|327189983|gb|EGE57105.1| ATP-dependent heat shock protease HslVU protein, chaperone
           ATP-binding subunit HslU [Rhizobium etli CNPAF512]
          Length = 435

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 304/435 (69%), Positives = 363/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDF
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H
Sbjct: 361 TEDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|110635818|ref|YP_676026.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1]
 gi|122965529|sp|Q11CL4|HSLU_MESSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110286802|gb|ABG64861.1| heat shock protein HslVU, ATPase subunit HslU [Chelativorans sp.
           BNC1]
          Length = 436

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 277/434 (63%), Positives = 355/434 (81%), Gaps = 2/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDRYIIGQ++AKRAVAIALRNRWRRQQL   LR+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRYIIGQKEAKRAVAIALRNRWRRQQLEPGLREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R+ V  +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAIALTREKMREGVEAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+L+ALVG+TA+  TR+ FR+KLR GE+ DKEI+I+VAD    + +F+IPG  
Sbjct: 123 AHLNAEERVLEALVGRTASPATRDSFRQKLRSGELDDKEIEIQVADAGGGMGSFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN++++  K MG GR K ++ +V+  Y  L+ DESD+L+D D V R ++   EN
Sbjct: 183 GANIGVLNINDMLQKAMGGGRTKTVKTTVKDSYKFLINDESDKLLDQDEVVRRALSSAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGA
Sbjct: 243 DGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LM+TEG+ L+FT
Sbjct: 303 FHVAKPSDLLPELQGRLPIRVELRALEKEDFRRILTETEASLIKQYIALMETEGVELEFT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+I  LA+VAV+LN++V +IGARRLQTVMERVL++IS++A D     +VIDA YV  H+
Sbjct: 363 EDAIVRLAEVAVDLNASVENIGARRLQTVMERVLDEISYNAPDRSGSKMVIDAAYVDQHV 422

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 423 GDLAKNTDLSRFIL 436


>gi|315122053|ref|YP_004062542.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495455|gb|ADR52054.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 437

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 380/436 (87%), Positives = 417/436 (95%), Gaps = 1/436 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LTFNFSPREIV+ELDRYI+GQ DAKRAVAIALRNRWRRQQL  +LRDE+MPKNILLVGPT
Sbjct: 2   LTFNFSPREIVAELDRYIVGQLDAKRAVAIALRNRWRRQQLSENLRDEVMPKNILLVGPT 61

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKTAISRRLA+LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA+N+VRE+RRDEV
Sbjct: 62  GVGKTAISRRLAKLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAVNLVRENRRDEV 121

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+AS+NAEERILDALVGKTATS TRE+FR+K RDGE+SDKEIDIEVADTS DIS+FDIP
Sbjct: 122 REKASLNAEERILDALVGKTATSTTRELFRQKFRDGEVSDKEIDIEVADTSPDISSFDIP 181

Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           G GA+VG+LNLSELFSKVMG  RKKKIRMSVQKCYPEL+RDESD+LID+DTVHR+SIQMV
Sbjct: 182 GAGANVGVLNLSELFSKVMGGVRKKKIRMSVQKCYPELVRDESDQLIDIDTVHRESIQMV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+YGIVFLDE DKIVAR+SG+G GVSREGVQRDLLPLVEGSSVSTKYG++NT HILFIAS
Sbjct: 242 EHYGIVFLDEIDKIVARESGDGAGVSREGVQRDLLPLVEGSSVSTKYGTVNTQHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVSRP+DLLPE+QGRFPVRVHLK L++ DFRLILTDTESNLI+QYKELMKTEG+ LD
Sbjct: 302 GAFHVSRPSDLLPEMQGRFPVRVHLKPLSRDDFRLILTDTESNLIVQYKELMKTEGVTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTEDSIDAL+DVAVNLNS VGDIGARRLQTVMERVLEDISFSAS+LQEKTVVIDAEYVRL
Sbjct: 362 FTEDSIDALSDVAVNLNSVVGDIGARRLQTVMERVLEDISFSASELQEKTVVIDAEYVRL 421

Query: 422 HIGDFPSETDMYHFIL 437
           H+GDF SE+D+  +IL
Sbjct: 422 HMGDFSSESDISRYIL 437


>gi|241206994|ref|YP_002978090.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860884|gb|ACS58551.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 435

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 302/435 (69%), Positives = 362/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD  S +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+ DESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYGDLILDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRALNKDDFRRILTETEASLIRQYRALMETESLSLEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     V IDA YVR H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 VGDLAQNTDLSRFIL 435


>gi|222084250|ref|YP_002542776.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium
           radiobacter K84]
 gi|254802292|sp|B9JG71|HSLU_AGRRK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221721698|gb|ACM24854.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium
           radiobacter K84]
          Length = 436

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 298/436 (68%), Positives = 360/436 (82%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQL  DLRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLEPDLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN---FDI 181
           +A ++AEER+LDALVG TA+  TR+ FRKKLRDG++ DKEIDIEVADT S +        
Sbjct: 122 KAHMSAEERVLDALVGATASPATRDSFRKKLRDGQLDDKEIDIEVADTGSGMPGGFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G+LNLSE+F K M  GR KK+R +V+  Y EL+RDESD+LID + + R++++  
Sbjct: 182 MPGANIGVLNLSEMFGKAM-GGRTKKVRTTVKDSYKELVRDESDKLIDNEAIQREAVRSA 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIAS
Sbjct: 241 EDDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L+ L K DFR ILT+ E++LI QYK LM+TE + LD
Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELRPLTKEDFRRILTEPEASLIRQYKALMETEDLKLD 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+IDALADVAV+LNSTV +IGARRLQTVMERVL++IS++ASD    +V IDA YVR 
Sbjct: 361 FTDDAIDALADVAVHLNSTVENIGARRLQTVMERVLDEISYNASDRAGVSVTIDAAYVRE 420

Query: 422 HIGDFPSETDMYHFIL 437
           H+GD  + TD+  FIL
Sbjct: 421 HVGDLANNTDLSRFIL 436


>gi|325291499|ref|YP_004277363.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp.
           H13-3]
 gi|325059352|gb|ADY63043.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp.
           H13-3]
          Length = 435

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 301/435 (69%), Positives = 363/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A  +AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD+ S +  F+IPG 
Sbjct: 122 KAHQSAEERVLDALVGSTASPATRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V K Y +L+RDESD+L+D D + R++++ VE
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVSKSYTDLVRDESDKLLDNDMIQREAVKSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDF
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D     V ID EYV+ H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD  ++TD+  +IL
Sbjct: 421 VGDLAADTDLSRYIL 435


>gi|15887403|ref|NP_353084.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|22653792|sp|Q8UJ87|HSLU_AGRT5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15154910|gb|AAK85869.1| heat shock chaperone [Agrobacterium tumefaciens str. C58]
          Length = 435

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 300/435 (68%), Positives = 363/435 (83%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A  +AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVAD+ S +  F+IPG 
Sbjct: 122 KAHQSAEERVLDALVGSTASPGTRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V K Y +L+RDESD+L+D + + R++++ VE
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVSKSYTDLVRDESDKLLDNEMIQREAVKSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDF
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D     V ID EYV+ H
Sbjct: 361 TDDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD  ++TD+  +IL
Sbjct: 421 VGDLAADTDLSRYIL 435


>gi|227823917|ref|YP_002827890.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium
           fredii NGR234]
 gi|254802314|sp|C3MBC8|HSLU_RHISN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|227342919|gb|ACP27137.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Sinorhizobium
           fredii NGR234]
          Length = 434

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 285/434 (65%), Positives = 357/434 (82%), Gaps = 2/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL  +LRDE+MPKNIL++GPTGV
Sbjct: 2   TNFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGITLVREKKRAEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG 183
           +A  NAEER+LDALVG TA+  TR+ FRKKLR  E+ +KEI+I++A+T +          
Sbjct: 122 KAHQNAEERVLDALVGTTASPATRDSFRKKLRANELDEKEIEIDIAETGAPGGFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LNLSE+F K +  GR +K++ +V+  Y  L+ DESD+L+D + + R+++   EN
Sbjct: 182 GANIGVLNLSEMFGKAL-GGRTRKVKTTVKDSYELLVNDESDKLLDNEQIQREAMAAAEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 241 DGIVFLDEIDKIAARDGGIGAGVSREGVQRDLLPLVEGTTVATKYGPMKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+DISF+A D    T++IDA+YVR H+
Sbjct: 361 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDISFNAPDRGGDTLMIDADYVRKHV 420

Query: 424 GDFPSETDMYHFIL 437
           GD  + TD+  +IL
Sbjct: 421 GDLAANTDLSRYIL 434


>gi|209883547|ref|YP_002287404.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha
           carboxidovorans OM5]
 gi|209871743|gb|ACI91539.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha
           carboxidovorans OM5]
          Length = 436

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/438 (60%), Positives = 344/438 (78%), Gaps = 3/438 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++G
Sbjct: 1   MKPMTDFSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRLQLEGGLREEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE +R 
Sbjct: 61  PTGVGKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRK 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNF 179
           +VR +A + AEER+LDALVG  A+S TRE FR++LRDGE++DKEI++E  A     +   
Sbjct: 121 DVRARAQLAAEERVLDALVGANASSGTRESFRRRLRDGELNDKEIEVETQAGGGPSMFEI 180

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               GA +G ++L ++F K+   GR K  R++V+  +  L+ +ESD+L+D + + RD+I 
Sbjct: 181 PGMPGAQMGAISLGDIFGKM--GGRTKTRRLTVEDSHEVLVNEESDKLLDDEALTRDAIH 238

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +VEN GIVFLDE DKI  RD      VSREGVQRDLLPL+EG++VSTK+G + TDHILFI
Sbjct: 239 VVENNGIVFLDEVDKICVRDGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFI 298

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E +LI QY  LMKTEG+ 
Sbjct: 299 ASGAFHIAKPSDLLPELQGRLPIRVELQALTRDDLRRILTEPEGSLIKQYIALMKTEGVT 358

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+ T+++IDALADVAV++NS+V +IGARRLQTVMERVL+++SF A D+  +T+ IDA YV
Sbjct: 359 LEITDEAIDALADVAVSVNSSVENIGARRLQTVMERVLDEVSFHAPDMNGQTITIDAAYV 418

Query: 420 RLHIGDFPSETDMYHFIL 437
           + HIGD    TD+  FIL
Sbjct: 419 QKHIGDLAKNTDLSRFIL 436


>gi|153008177|ref|YP_001369392.1| ATP-dependent protease ATP-binding subunit HslU [Ochrobactrum
           anthropi ATCC 49188]
 gi|166221592|sp|A6WX59|HSLU_OCHA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|151560065|gb|ABS13563.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           anthropi ATCC 49188]
          Length = 434

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 280/433 (64%), Positives = 355/433 (81%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +VRE RRD+V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAITLVREKRRDDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEVADT S  S       G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVADTGSGPSFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G++NLS++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVMNLSDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVTEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGAF
Sbjct: 242 GIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+ T+
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLEITD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++IS++A D    T VIDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMERVLDEISYTAPDKTGATFVIDAAYVKDKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 SLAKNTDLSRFIL 434


>gi|154246238|ref|YP_001417196.1| ATP-dependent protease ATP-binding subunit HslU [Xanthobacter
           autotrophicus Py2]
 gi|238686721|sp|A7IHP6|HSLU_XANP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|154160323|gb|ABS67539.1| heat shock protein HslVU, ATPase subunit HslU [Xanthobacter
           autotrophicus Py2]
          Length = 435

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/434 (60%), Positives = 342/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ +AKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRHIVGQANAKRAVAIALRNRWRRQQLDDKLREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE+RR +V+ +
Sbjct: 63  KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREARRKDVQAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AE R+LDALVG TA+  TR+ FRK+LR GE+ DKE++IEV      +  F+IPG  
Sbjct: 123 AHLAAENRVLDALVGATASPATRDAFRKRLRAGELDDKEVEIEVQAGGQGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +NL ++  K    GR K  R++V++ +P L+ +E+D+LID D + +D+I  VEN
Sbjct: 183 GTQMGAVNLGDMLGKAF-GGRSKPRRVNVKEAHPLLLAEEADKLIDQDAIVQDAIHQVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+  +G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKIAGREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L ++DF  ILT+TE++L+ Q   LM TEG+ L  T
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLTIT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            D+++A+AD AV +NS V +IGARRLQTV+ERVL+D+SFSA D   +TVV+DAEYVR  +
Sbjct: 362 TDAVEAIADAAVEVNSNVENIGARRLQTVIERVLDDLSFSAPDRSGETVVVDAEYVRSRV 421

Query: 424 GDFPSETDMYHFIL 437
            D     D+  FIL
Sbjct: 422 ADLARNADLSRFIL 435


>gi|254718122|ref|ZP_05179933.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp.
           83/13]
 gi|265983074|ref|ZP_06095809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           83/13]
 gi|306839749|ref|ZP_07472551.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF
           2653]
 gi|264661666|gb|EEZ31927.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           83/13]
 gi|306405209|gb|EFM61486.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF
           2653]
          Length = 434

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 280/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGIP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|306842805|ref|ZP_07475445.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2]
 gi|306286999|gb|EFM58510.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2]
          Length = 434

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 280/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|306843498|ref|ZP_07476099.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1]
 gi|306276189|gb|EFM57889.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1]
          Length = 434

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 279/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A +NAEER+LDALVG+TA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +   NF+IPG  
Sbjct: 123 AHLNAEERVLDALVGRTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAG-PNFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+
Sbjct: 182 GANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA
Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F+
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  I
Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  FIL
Sbjct: 421 GGLAKNTDLSRFIL 434


>gi|254700711|ref|ZP_05162539.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           5 str. 513]
 gi|261751220|ref|ZP_05994929.1| heat shock protein hslU [Brucella suis bv. 5 str. 513]
 gi|261740973|gb|EEY28899.1| heat shock protein hslU [Brucella suis bv. 5 str. 513]
          Length = 434

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/433 (63%), Positives = 356/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + + ++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQGALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|90421826|ref|YP_530196.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisB18]
 gi|123275695|sp|Q21CK9|HSLU_RHOPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|90103840|gb|ABD85877.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisB18]
          Length = 434

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/435 (60%), Positives = 346/435 (79%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQHDAKRAVSIALRNRWRRLQLEGSLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V  
Sbjct: 62  GKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAISQVREKKRKDVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A I AEER+LDALVG  +++ TR+ FRKKLR GE++DKEI++E   T      F+IPG 
Sbjct: 122 RAQIAAEERVLDALVGANSSATTRDSFRKKLRAGELNDKEIEVETQSTGGGSPMFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G ++L ++F K+   GR K  R++V+  +  L+ +E+D+L+D D + +++I  VE
Sbjct: 182 PGAQMGAISLGDIFGKM--GGRTKTRRLTVEDSHELLVNEEADKLLDSDQLVQEAINAVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  L++TEG+ L+ 
Sbjct: 300 AFHIAKPSDLLPELQGRLPIRVELSALTRDDMRRILTEPEASLIKQYVALLQTEGVTLEI 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+++IDALADVAV +NS+V +IGARRLQTVMERVL++ISF+A D   +T+ +DA YV+ H
Sbjct: 360 TDEAIDALADVAVAVNSSVENIGARRLQTVMERVLDEISFTAPDRDGETIQVDAAYVQKH 419

Query: 423 IGDFPSETDMYHFIL 437
           +GD     D+  FIL
Sbjct: 420 VGDLAKNADLSRFIL 434


>gi|154251693|ref|YP_001412517.1| ATP-dependent protease ATP-binding subunit HslU [Parvibaculum
           lavamentivorans DS-1]
 gi|171769575|sp|A7HSH7|HSLU_PARL1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|154155643|gb|ABS62860.1| heat shock protein HslVU, ATPase subunit HslU [Parvibaculum
           lavamentivorans DS-1]
          Length = 435

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/435 (61%), Positives = 350/435 (80%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQLP  LRDE++PKNIL++GPTGV
Sbjct: 2   TSFSPREIVSELDRYIVGQRDAKRAVAIALRNRWRRQQLPDALRDEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV++A+ + RE +R +V+ 
Sbjct: 62  GKTEISRRLAKLAEAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIALAMTRERKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AE R+LDALVG  A+  TRE FR+KLRDGE+ +KEI++EVAD+   +  FDIPG 
Sbjct: 122 KAHVAAEGRVLDALVGANASEATRESFRRKLRDGELDEKEIEVEVADSGGGMPTFDIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NLS++  K    GR K  RM+V+  Y  L+ +ESD+L+D + + +++I+ VE
Sbjct: 182 PGSQMGMINLSDIMGKAF-GGRTKTRRMAVRDSYDVLVAEESDKLLDQEQLTQEAIRSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASG
Sbjct: 241 NNGIVFLDEIDKICARAERQGGDVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L+K D R +LT+ E++LI QY  L+ TE + LDF
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELQALSKDDMRRVLTEPEASLIKQYVALLNTENVTLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D IDA+AD+A ++NSTV +IGARRL TVMERVL+++SF+A+D   +TV ID  YVR H
Sbjct: 361 TDDGIDAIADIATSVNSTVENIGARRLHTVMERVLDEVSFAATDKAGETVTIDGAYVRKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +GD    TD+  FIL
Sbjct: 421 LGDLSKNTDLSKFIL 435


>gi|254713516|ref|ZP_05175327.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M644/93/1]
 gi|254716128|ref|ZP_05177939.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M13/05/1]
 gi|261217898|ref|ZP_05932179.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M13/05/1]
 gi|261321252|ref|ZP_05960449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M644/93/1]
 gi|260922987|gb|EEX89555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M13/05/1]
 gi|261293942|gb|EEX97438.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M644/93/1]
          Length = 434

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/433 (63%), Positives = 356/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL +ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLNEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|23502927|ref|NP_699054.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis
           1330]
 gi|163844097|ref|YP_001628501.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC
           23445]
 gi|225626459|ref|ZP_03784498.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str.
           Cudo]
 gi|254690212|ref|ZP_05153466.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 6 str. 870]
 gi|254694702|ref|ZP_05156530.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 3 str. Tulya]
 gi|254707400|ref|ZP_05169228.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis M163/99/10]
 gi|254709057|ref|ZP_05170868.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis B2/94]
 gi|256030582|ref|ZP_05444196.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           pinnipedialis M292/94/1]
 gi|256060044|ref|ZP_05450226.1| ATP-dependent protease ATP-binding subunit HslU [Brucella neotomae
           5K33]
 gi|256158578|ref|ZP_05456468.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           M490/95/1]
 gi|256253989|ref|ZP_05459525.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti
           B1/94]
 gi|256258467|ref|ZP_05464003.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 9 str. C68]
 gi|256370477|ref|YP_003107988.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|260169488|ref|ZP_05756299.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp.
           F5/99]
 gi|260567450|ref|ZP_05837920.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 4 str. 40]
 gi|260755752|ref|ZP_05868100.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 6 str. 870]
 gi|260884778|ref|ZP_05896392.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 9 str. C68]
 gi|261215029|ref|ZP_05929310.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 3 str. Tulya]
 gi|261221129|ref|ZP_05935410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           B1/94]
 gi|261314887|ref|ZP_05954084.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M163/99/10]
 gi|261316555|ref|ZP_05955752.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis B2/94]
 gi|261324020|ref|ZP_05963217.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           neotomae 5K33]
 gi|261759013|ref|ZP_06002722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           F5/99]
 gi|265987629|ref|ZP_06100186.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M292/94/1]
 gi|265997089|ref|ZP_06109646.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M490/95/1]
 gi|297247307|ref|ZP_06931025.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv.
           5 str. B3196]
 gi|32129634|sp|Q8FY12|HSLU_BRUSU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043905|sp|B0CJH9|HSLU_BRUSI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|23348960|gb|AAN30969.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis 1330]
 gi|163674820|gb|ABY38931.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis ATCC
           23445]
 gi|225618116|gb|EEH15159.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str.
           Cudo]
 gi|256000640|gb|ACU49039.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|260156968|gb|EEW92048.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 4 str. 40]
 gi|260675860|gb|EEX62681.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 6 str. 870]
 gi|260874306|gb|EEX81375.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 9 str. C68]
 gi|260916636|gb|EEX83497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 3 str. Tulya]
 gi|260919713|gb|EEX86366.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           B1/94]
 gi|261295778|gb|EEX99274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis B2/94]
 gi|261300000|gb|EEY03497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           neotomae 5K33]
 gi|261303913|gb|EEY07410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M163/99/10]
 gi|261738997|gb|EEY26993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp.
           F5/99]
 gi|262551557|gb|EEZ07547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti
           M490/95/1]
 gi|264659826|gb|EEZ30087.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           pinnipedialis M292/94/1]
 gi|297174476|gb|EFH33823.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv.
           5 str. B3196]
          Length = 434

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/433 (63%), Positives = 357/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|294851308|ref|ZP_06791981.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026]
 gi|294819897|gb|EFG36896.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026]
          Length = 434

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 275/433 (63%), Positives = 357/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDNKEIEIEVSDSGASPNFKIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|17988331|ref|NP_540965.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045683|ref|ZP_05448561.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256112404|ref|ZP_05453325.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis bv. 3 str. Ether]
 gi|260562984|ref|ZP_05833470.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M]
 gi|265992104|ref|ZP_06104661.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993841|ref|ZP_06106398.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether]
 gi|22653793|sp|Q8YE30|HSLU_BRUME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|17984106|gb|AAL53229.1| heat shock protein hslu [Brucella melitensis bv. 1 str. 16M]
 gi|260153000|gb|EEW88092.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M]
 gi|262764822|gb|EEZ10743.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether]
 gi|263003170|gb|EEZ15463.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1]
          Length = 434

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/433 (63%), Positives = 357/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|225853510|ref|YP_002733743.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis ATCC 23457]
 gi|256263008|ref|ZP_05465540.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9]
 gi|254802298|sp|C0RFW7|HSLU_BRUMB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225641875|gb|ACO01789.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis
           ATCC 23457]
 gi|263092881|gb|EEZ17056.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9]
 gi|326410077|gb|ADZ67142.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis M28]
 gi|326539793|gb|ADZ88008.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis
           M5-90]
          Length = 434

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/433 (63%), Positives = 357/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIALVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|62290923|ref|YP_222716.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700834|ref|YP_415408.1| ATP-dependent protease ATP-binding subunit HslU [Brucella
           melitensis biovar Abortus 2308]
 gi|189025136|ref|YP_001935904.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           S19]
 gi|237816430|ref|ZP_04595423.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus
           str. 2308 A]
 gi|254696329|ref|ZP_05158157.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254731245|ref|ZP_05189823.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus
           bv. 4 str. 292]
 gi|260546185|ref|ZP_05821925.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038]
 gi|260758976|ref|ZP_05871324.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 4 str. 292]
 gi|260760700|ref|ZP_05873043.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|81309351|sp|Q57AH9|HSLU_BRUAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123740942|sp|Q2YQZ4|HSLU_BRUA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238689414|sp|B2S978|HSLU_BRUA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62197055|gb|AAX75355.1| HslU, heat shock protein HslVU, ATPase subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616935|emb|CAJ12036.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:Heat shock protein HslVU [Brucella melitensis
           biovar Abortus 2308]
 gi|189020708|gb|ACD73430.1| CbxX/CfqX superfamily [Brucella abortus S19]
 gi|237788497|gb|EEP62712.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus
           str. 2308 A]
 gi|260096292|gb|EEW80168.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038]
 gi|260669294|gb|EEX56234.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 4 str. 292]
 gi|260671132|gb|EEX57953.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella
           abortus bv. 2 str. 86/8/59]
          Length = 434

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 275/433 (63%), Positives = 357/433 (82%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTV+E+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVIEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|75674328|ref|YP_316749.1| ATP-dependent protease ATP-binding subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|123759422|sp|Q3SWE4|HSLU_NITWN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|74419198|gb|ABA03397.1| Heat shock protein HslU [Nitrobacter winogradskyi Nb-255]
          Length = 433

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/434 (59%), Positives = 341/434 (78%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + SPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDISPREIVSELDRFIVGQADAKRAVSIALRNRWRRQQLTGPLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+K+E TKFTE+GYVGR+VEQI+RD+V+VAIN  RE +R +V+ 
Sbjct: 62  GKTEIARRLAKLANAPFLKIEATKFTEVGYVGRDVEQIVRDIVEVAINQTRERKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG 183
           +A + AEER+LDALVG  A++ TR+ FRK+LR GE++DKEI+IE   +    +       
Sbjct: 122 RAQLAAEERVLDALVGANASAATRDSFRKRLRSGELNDKEIEIETQTSGGGPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA VG +++ ++F K+   GR K  R++V   Y  L+ +ESD+L+D D + +++I  VEN
Sbjct: 182 GAQVGAISIGDIFGKM--GGRTKTRRLTVSDSYEILINEESDKLLDSDQLTQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TEG++LDFT
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRDDLRRILTEPEASLIKQYVALMDTEGVVLDFT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D   +TV IDA YV+ +I
Sbjct: 360 DDAVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRNGETVRIDAGYVQKNI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|92115752|ref|YP_575481.1| ATP-dependent protease ATP-binding subunit HslU [Nitrobacter
           hamburgensis X14]
 gi|123387265|sp|Q1QRX6|HSLU_NITHX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91798646|gb|ABE61021.1| heat shock protein HslVU, ATPase subunit HslU [Nitrobacter
           hamburgensis X14]
          Length = 433

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 263/432 (60%), Positives = 341/432 (78%), Gaps = 3/432 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   +R+E++PKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSMREEVLPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+VAI   RE +R +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKDVQARA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGA 185
            + AEER+LDALVG  A++ TR+ FR+KLR G+++DKEI+IE   +  + +       GA
Sbjct: 124 QLAAEERVLDALVGANASAATRDSFRRKLRAGDLNDKEIEIETQSSGGAPMFEIPGMPGA 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG +++ ++F K+   GR K  R++V   Y  L+ +ESD+L+D D + +++I  VEN G
Sbjct: 184 QVGAISIGDIFGKM--GGRTKTRRLTVVDSYEILVNEESDKLLDSDQLTQEAIAAVENNG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGAFH
Sbjct: 242 IVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY  LM+TEG+ LD T+D
Sbjct: 302 IAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYVALMQTEGVTLDITDD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +IDALAD+AV +NSTV +IGARRLQTVMERVL+DISFSA D   +TV IDA YV+ HIGD
Sbjct: 362 AIDALADIAVAVNSTVENIGARRLQTVMERVLDDISFSAPDRNGETVRIDAGYVQKHIGD 421

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 422 LAKNADLSRFIL 433


>gi|27375757|ref|NP_767286.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium
           japonicum USDA 110]
 gi|32129623|sp|Q89WN2|HSLU_BRAJA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27348895|dbj|BAC45911.1| heat shock chaperone [Bradyrhizobium japonicum USDA 110]
          Length = 434

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 265/435 (60%), Positives = 348/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLEGSLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIAQVRERKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  A+S TRE FRKKLR GE++DKEI+IE   +   +  F+IPG 
Sbjct: 122 RAQLAAEERVLDALVGANASSATRESFRKKLRAGELNDKEIEIETQSSGGGMPMFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D + +  ++I  VE
Sbjct: 182 PGAQMGAISIGDIFGKL--GGRSKTRRLTVESSHEILINEESDKLLDTEQLTLEAISAVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD   G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LM+TEG+ LD 
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMQTEGVTLDI 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+++IDALADVAV +NSTV +IGARRLQTVMERVL++ISF+A D   +T+ +DA++V+ H
Sbjct: 360 TDNAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFTAPDRNGETIRVDADFVQKH 419

Query: 423 IGDFPSETDMYHFIL 437
           +GD     D+  FIL
Sbjct: 420 VGDLAKNADLSRFIL 434


>gi|319780233|ref|YP_004139709.1| heat shock protein HslVU, ATPase HslU [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166121|gb|ADV09659.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 436

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 282/434 (64%), Positives = 355/434 (81%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +A
Sbjct: 64  TEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKARA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            +NAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI++EVADT S  +  F+IPG  
Sbjct: 124 HVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEVEVADTGSGGMPGFEIPGMP 183

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   EN
Sbjct: 184 GANIGVLNINDMLSKAMGGKKTKMRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAAEN 243

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 244 DGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L FT
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELRALEKDDFVRILTETEASLIKQYIALMKTEGVELTFT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  H+
Sbjct: 363 DDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKHV 422

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 423 GDLSRNTDLSRFIL 436


>gi|323138813|ref|ZP_08073877.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp.
           ATCC 49242]
 gi|322395961|gb|EFX98498.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp.
           ATCC 49242]
          Length = 434

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/434 (59%), Positives = 341/434 (78%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRLQLEGQMREEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDL++VA+ +V+E RR +V+ +
Sbjct: 63  KTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLIEVALVMVKERRRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+LDALVG  ++  TRE FRK+LRDGE+ DKEI+IE+A +      F++P   
Sbjct: 123 AQQAAEERVLDALVGPASSPATRETFRKRLRDGELDDKEIEIELAQSGGSTPMFELPNMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASV   +L ++F K +  G  K  +++V++ +  L+ +ESD+LID +   R++I  VEN
Sbjct: 183 GASVSAFSLGDIFGKALQRG--KPRKLTVKEAHDPLVAEESDKLIDQEASVREAIHEVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA
Sbjct: 241 NGIVFIDEMDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L SLN+ DFR ILT+TE+ L  QY  LM TEG+ L+F+
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELASLNEEDFRRILTETEACLTKQYVALMGTEGVTLEFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             +I+A+A VAV +N++V +IGARRLQTVMERVL+DISFSASD   +TVV+D +YV  HI
Sbjct: 361 PSAIEAIAKVAVQVNTSVENIGARRLQTVMERVLDDISFSASDRAGETVVVDGDYVERHI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNRDLSRFIL 434


>gi|288959726|ref|YP_003450067.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288912034|dbj|BAI73523.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 446

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 270/435 (62%), Positives = 343/435 (78%), Gaps = 5/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTGVGK
Sbjct: 13  FSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRQQLPDGLREEVLPKNILMIGPTGVGK 72

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ AI + RE  R EV  +A
Sbjct: 73  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAIGLTRERLRKEVAAKA 132

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT--SSDISNFDIPG- 183
            + AEER+LDAL G +A++ TR  FRK LR+G ++DKEI+I+VADT   + +  FDIPG 
Sbjct: 133 ELRAEERVLDALCGDSASAETRAKFRKMLREGTLNDKEIEIQVADTGAPAGMPTFDIPGV 192

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  +G+LNL+++F K+M  GR K  RM+V + +  LM +ESD+L+D + V  ++I+ VE
Sbjct: 193 PGGQMGMLNLNDMFGKMM-GGRTKTRRMTVSESHGVLMAEESDKLLDQEKVVAEAIRAVE 251

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASG
Sbjct: 252 QNGIVFLDEIDKISARSDARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASG 311

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK+L++ DF+ ILT+ E++LI QYK LMKTE + L F
Sbjct: 312 AFHVAKPSDLLPELQGRLPIRVELKALSQDDFKRILTEPEASLIRQYKALMKTEEVDLVF 371

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+DSID LA +A  +NS+V +IGARRL TV+ER+LE+ISF+ASD   +TV IDA  VR  
Sbjct: 372 TDDSIDELARLAAEINSSVENIGARRLHTVLERLLEEISFAASDRAGETVTIDAALVRER 431

Query: 423 IGDFPSETDMYHFIL 437
           +G      D+  FIL
Sbjct: 432 VGGLAKNADLSKFIL 446


>gi|298293772|ref|YP_003695711.1| heat shock protein HslVU, ATPase HslU [Starkeya novella DSM 506]
 gi|296930283|gb|ADH91092.1| heat shock protein HslVU, ATPase subunit HslU [Starkeya novella DSM
           506]
          Length = 436

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/436 (60%), Positives = 342/436 (78%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGV
Sbjct: 2   TSFSPREIVSELDRFIVGQHKAKRAVAIALRNRWRRQQLEGQLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE RR  V  
Sbjct: 62  GKTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREVRRKGVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG 183
           +A + AEER+LDALVG TA++ TRE FRKKLRDG + DKE++IEVA +    +  F+IPG
Sbjct: 122 KAHLAAEERVLDALVGTTASAGTRESFRKKLRDGLLDDKEVEIEVASSGGQGMPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA +G +++ ++  K    GR K  R++V+  +P LM +E+D+LID D + +++I+ V
Sbjct: 182 MPGAQMGAISIGDMLGKAF-GGRSKPRRVTVKDAHPLLMSEEADKLIDQDAIVQEAIRAV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EENGIVFLDEIDKIAGSDRRGGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L++L + DF+ ILT+TE++L+ Q   LM TEG+ L 
Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELEALTREDFKRILTETEASLVKQSVALMGTEGVELS 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            TED+++A+AD+AV +N++V +IGARRLQTV+ERVL+D+SF+A D   +T+VID  YVR 
Sbjct: 361 ITEDAVEAIADIAVQVNASVENIGARRLQTVIERVLDDLSFNAPDRSGETIVIDGAYVRE 420

Query: 422 HIGDFPSETDMYHFIL 437
            + D    TD+  +IL
Sbjct: 421 RVADLAGNTDLSRYIL 436


>gi|148559450|ref|YP_001259884.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ovis ATCC
           25840]
 gi|166221464|sp|A5VT37|HSLU_BRUO2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|148370707|gb|ABQ60686.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ovis ATCC
           25840]
          Length = 434

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 274/433 (63%), Positives = 355/433 (81%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRR A+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRPAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVE ++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEDTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L+F++
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFSD 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG
Sbjct: 362 DAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIG 421

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 422 GLAKNTDLSRFIL 434


>gi|13474176|ref|NP_105744.1| ATP-dependent protease ATP-binding subunit HslU [Mesorhizobium loti
           MAFF303099]
 gi|14024928|dbj|BAB51530.1| heat shock protein; ATP-dependent HSL protease ATP-binding subunit;
           HslU [Mesorhizobium loti MAFF303099]
          Length = 443

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 283/436 (64%), Positives = 354/436 (81%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGV
Sbjct: 9   TTFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGV 68

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ 
Sbjct: 69  GKTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKA 128

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG 183
           +A INAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG
Sbjct: 129 RAHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPG 188

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   
Sbjct: 189 MPGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDAT 248

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           EN GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIAS
Sbjct: 249 ENDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIAS 307

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L 
Sbjct: 308 GAFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLT 367

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  
Sbjct: 368 FTDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEK 427

Query: 422 HIGDFPSETDMYHFIL 437
           H+GD    TD+  FIL
Sbjct: 428 HVGDLSRNTDLSRFIL 443


>gi|260460981|ref|ZP_05809230.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium
           opportunistum WSM2075]
 gi|259033015|gb|EEW34277.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium
           opportunistum WSM2075]
          Length = 436

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 282/434 (64%), Positives = 355/434 (81%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ +A
Sbjct: 64  TEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKARA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183
            +NAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG  
Sbjct: 124 HVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGTGGMPGFEIPGMP 183

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   EN
Sbjct: 184 GANIGVLNINDMLSKAMGGKKTKLRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAAEN 243

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA
Sbjct: 244 DGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L FT
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELRALEKEDFVRILTETEASLIKQYIALMKTEGVELTFT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  H+
Sbjct: 363 DDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKHV 422

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 423 GDLSRNTDLSRFIL 436


>gi|85714082|ref|ZP_01045071.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
 gi|85699208|gb|EAQ37076.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
          Length = 433

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 260/432 (60%), Positives = 340/432 (78%), Gaps = 3/432 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL   LR+E++PKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSLREEVLPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI   RE +R EV+ +A
Sbjct: 64  TEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKEVQARA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGA 185
            + AEER+LDALVG  +++ TR+ FRK+LR GE++DKEI+IE   +  + +       GA
Sbjct: 124 QLAAEERVLDALVGANSSAATRDSFRKRLRAGELNDKEIEIETQSSGGAPMFEIPGMPGA 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG +++ ++F K+   GR K  R++V   +  L+ +ESD+L+D D +  ++I  VEN G
Sbjct: 184 QVGAISIGDIFGKM--GGRTKTRRLTVSDSHEILINEESDKLLDSDQLTLEAIAAVENDG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGAFH
Sbjct: 242 IVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGAFH 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY  LM TEG+ LD T+D
Sbjct: 302 IAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYIALMHTEGVTLDITDD 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D + +TV ID+ YV+ HIGD
Sbjct: 362 AVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRKGETVRIDSGYVQKHIGD 421

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 422 LAKNADLSRFIL 433


>gi|90420984|ref|ZP_01228888.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334762|gb|EAS48538.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 434

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 279/435 (64%), Positives = 352/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL   LR+E+MPKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEGSLREEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ 
Sbjct: 62  GKTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R+L+ALVGKTA+  TR+ FRKKLR GE+ DKEID+EV+DTS+ +   DIPG 
Sbjct: 122 KAHQGAEDRVLNALVGKTASPATRDSFRKKLRAGELDDKEIDVEVSDTSNPMGGMDIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K+    R K+ R SV++ Y  L+ +ESD+L+D + + R++I  VE
Sbjct: 182 PGANIGVLNLSEMFGKM--GQRTKQRRTSVRESYDLLIGEESDKLLDQEQLVREAISSVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DK+  +D  +G GVSREGVQRDLLPLVEG++V+TK+GS+ TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKVANKDGQSGAGVSREGVQRDLLPLVEGTTVATKHGSVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LMKTE + L  
Sbjct: 300 AFHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIKQYIALMKTENVDLVI 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD AV LN ++ +IGARRLQTVMERVL+DISF A D   ++  +DA YV   
Sbjct: 360 TDDAIDALADTAVALNGSIENIGARRLQTVMERVLDDISFEAPDKSGESCTVDAAYVHKA 419

Query: 423 IGDFPSETDMYHFIL 437
           +     +TD+  FIL
Sbjct: 420 LDGIAGDTDLSRFIL 434


>gi|146337375|ref|YP_001202423.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp.
           ORS278]
 gi|166221463|sp|A4YJU7|HSLU_BRASO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146190181|emb|CAL74173.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone; heat shock protein [Bradyrhizobium sp.
           ORS278]
          Length = 434

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 351/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVSIALRNRWRRLQLDTGLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V  
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIHQVRERKRKDVAA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  +++ TR+ FR+KLR GE++DKEI+IE   +   +  F+IPG 
Sbjct: 122 RAQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGMPMFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D D + +++I +VE
Sbjct: 182 PGAQMGAISIGDIFGKL--GGRTKTRRVTVEASHDILIAEESDKLLDSDQLVQEAINVVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI  R++ +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LMKTEG+ LD 
Sbjct: 300 AFHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDI 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF+ASD   +T+ +DA YV+ H
Sbjct: 360 TDDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFTASDRTGETMRVDAAYVQQH 419

Query: 423 IGDFPSETDMYHFIL 437
           IGD     D+  FIL
Sbjct: 420 IGDLAKNADLSRFIL 434


>gi|22653795|sp|Q98CU1|HSLU_RHILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 436

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 283/436 (64%), Positives = 354/436 (81%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE  R++V+ 
Sbjct: 62  GKTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG 183
           +A INAEER+L+ALVGKTA+  TR+ FRKKLRDGE+ DKEI+IEVADT +  +  F+IPG
Sbjct: 122 RAHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G+LN++++ SK MG  + K  + +V++ Y  L+ DESD+L+D D V R ++   
Sbjct: 182 MPGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDAT 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           EN GIVFLDE DKI AR   +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIAS
Sbjct: 242 ENDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  LMKTEG+ L 
Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLT 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D    +V IDA YV  
Sbjct: 361 FTDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEK 420

Query: 422 HIGDFPSETDMYHFIL 437
           H+GD    TD+  FIL
Sbjct: 421 HVGDLSRNTDLSRFIL 436


>gi|163757482|ref|ZP_02164571.1| putative ATP-dependent heat shock protease component [Hoeflea
           phototrophica DFL-43]
 gi|162284984|gb|EDQ35266.1| putative ATP-dependent heat shock protease component [Hoeflea
           phototrophica DFL-43]
          Length = 436

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/436 (65%), Positives = 357/436 (81%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPRE V+ELDR+IIGQ+DAKRAVAIALRNRWRRQQL   LR+E+MPKNIL++GPTGV
Sbjct: 2   TTFSPRETVTELDRFIIGQKDAKRAVAIALRNRWRRQQLTGPLREEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+  I +VRE +R EV  
Sbjct: 62  GKTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEAGIMLVRERKRGEVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG 183
           +A +NAEER+LDALVG TA+  TR+ FRKKLRDG + DKEI+IEVAD S+  +  FD+PG
Sbjct: 122 KARLNAEERVLDALVGATASPATRDSFRKKLRDGLLDDKEIEIEVADNSAGGMPQFDLPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++G+LNL++LF K M  GR +KI+ +V+  Y  L+ DESD+L+DMD +H+++++  
Sbjct: 182 MPGGNIGVLNLNDLFGKAM-GGRTRKIKTTVRDSYDTLIGDESDKLLDMDQIHQEALKSA 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVF+DE DKI  R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIAS
Sbjct: 241 EDDGIVFIDEIDKIANREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY  LM TE + L+
Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELRALTKDDFRRILTETEASLIKQYVALMGTEDMTLE 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED+IDALA+VAV+LN ++ +IGARRLQTVMERVL+DISF+A D    T+ ID++YVR 
Sbjct: 361 FTEDAIDALAEVAVHLNGSIENIGARRLQTVMERVLDDISFTAPDQSGSTITIDSDYVRK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++GD    TD+  FIL
Sbjct: 421 NVGDLAQNTDLSRFIL 436


>gi|239833120|ref|ZP_04681449.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           intermedium LMG 3301]
 gi|239825387|gb|EEQ96955.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum
           intermedium LMG 3301]
          Length = 441

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/433 (63%), Positives = 350/433 (80%), Gaps = 2/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 10  NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI +VRE RR++V+ +
Sbjct: 70  KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEVAITLVREKRREDVKAK 129

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPGG 184
           A +NAEER+L+ALVGKTA+  TR+ FRKKLR+ E+ DKEI+IEVADT S  S       G
Sbjct: 130 AHLNAEERVLEALVGKTASPATRDSFRKKLRNNELDDKEIEIEVADTGSGPSFEIPGMPG 189

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G++NLS++  K M  GR K  + +V+  Y  L+ DESD+L+D + + ++++++ E+ 
Sbjct: 190 ANIGVMNLSDMLGKAM-GGRTKTRKTTVKDSYAILINDESDKLLDQEQIVQEALRVTEDE 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGAF
Sbjct: 249 GIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGAF 308

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + L FT+
Sbjct: 309 HVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLTFTD 368

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++ISF+A D       IDA YV+  I 
Sbjct: 369 DAIDALADIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKTGAVFTIDAAYVKDKID 428

Query: 425 DFPSETDMYHFIL 437
                TD+  FIL
Sbjct: 429 GLAKNTDLSRFIL 441


>gi|148251770|ref|YP_001236355.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp.
           BTAi1]
 gi|166221462|sp|A5E8F5|HSLU_BRASB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146403943|gb|ABQ32449.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 350/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ DAKRAV+IALRNRWRR QL A LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRYIVGQADAKRAVSIALRNRWRRLQLDAGLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V  
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIVQVRERKRKDVAA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  +++ TR+ FR+KLR GE++DKEI+IE   +      F+IPG 
Sbjct: 122 RAQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGFPMFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G +++ ++F K+   GR K  R++V+  +  L+ +ESD+L+D D + +++I +VE
Sbjct: 182 PGAQMGAISIGDIFGKL--GGRTKTRRVTVESSHDILIAEESDKLLDNDQLVQEAISVVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI  R++ +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY  LMKTEG+ LD 
Sbjct: 300 AFHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDI 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALAD+AV +NSTV +IGARRLQTVMERVL++ISF+ASD   +T+ +DA YV+ H
Sbjct: 360 TDDAIDALADIAVAVNSTVENIGARRLQTVMERVLDEISFTASDRSGETMRVDAAYVQQH 419

Query: 423 IGDFPSETDMYHFIL 437
           IGD     D+  FIL
Sbjct: 420 IGDLAKNADLSRFIL 434


>gi|222147041|ref|YP_002547998.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium
           vitis S4]
 gi|254802293|sp|B9JXW4|HSLU_AGRVS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221734031|gb|ACM34994.1| heat shock chaperone [Agrobacterium vitis S4]
          Length = 435

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 295/435 (67%), Positives = 358/435 (82%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQNDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +++E +R EV  
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLIKEKKRLEVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER+LDALVG TA+  TR+ FRKKLR GE+ DKEIDIEVA+TSS +  F+IPG 
Sbjct: 122 KAHAGAEERVLDALVGATASPATRDSFRKKLRAGELDDKEIDIEVAETSSGMPGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA+VGILNLS++F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++ VE
Sbjct: 182 PGANVGILNLSDMFGKAM-GGRTKKVRTTVKTSYADLIRDESDKLIDNEVIQREAVKSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI  R+   G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIANREGAMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV LK+L K DFR ILT+TE++LI QY  LM TE + L+F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELKALTKEDFRRILTETEASLIRQYIALMATEQLDLEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALADVAVNLNS++ +IGARRLQTVMERVL DISF+A D     V+ID+ YVR H
Sbjct: 361 TEDAIDALADVAVNLNSSIENIGARRLQTVMERVLYDISFNAPDRGGAKVMIDSAYVREH 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+  ++ D+  +IL
Sbjct: 421 VGEIAADADLSRYIL 435


>gi|158421845|ref|YP_001523137.1| ATP-dependent protease ATP-binding subunit HslU [Azorhizobium
           caulinodans ORS 571]
 gi|172048021|sp|A8IIZ0|HSLU_AZOC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|158328734|dbj|BAF86219.1| heat shock protein [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 261/434 (60%), Positives = 341/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRHIVGQGKAKRAVAIALRNRWRRQQLQGHMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R +V+ +
Sbjct: 63  KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREQKRKDVQAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  ++S TR+ FRKKLR GE+ +KE++IEV   +  +  F+IPG  
Sbjct: 123 AHLAAEERVLDALVGANSSSTTRDAFRKKLRAGELDEKEVEIEVQAGAQGMPMFEIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++  K    GR K  R+ V+  +P L+ +E+D+LID +   +++I  VEN
Sbjct: 183 GAQMGAVSLGDMLGKAF-GGRTKARRVLVKDAHPLLLTEEADKLIDQEATTQEAIYAVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+  +G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 242 NGIVFLDEIDKIAQREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++L ++DF  ILT+TE++L+ Q   LM TEG+ LD +
Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLDIS 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            D+++A+ADVAV +NSTV +IGARRLQTVMERVL+++SF+A D   +TV IDA YVR  +
Sbjct: 362 PDAVEAIADVAVEVNSTVENIGARRLQTVMERVLDELSFTAPDRSGETVSIDAAYVRERV 421

Query: 424 GDFPSETDMYHFIL 437
            D     D+  FIL
Sbjct: 422 ADLAKNADLSRFIL 435


>gi|115522400|ref|YP_779311.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisA53]
 gi|122297922|sp|Q07UQ3|HSLU_RHOP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115516347|gb|ABJ04331.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisA53]
          Length = 433

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/434 (60%), Positives = 342/434 (78%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQSDAKRAVSIALRNRWRRLQLEGALREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG 183
           +A + AEER+LDALVG +A+  TR+ FRKKLR GE++DKEI++E   +S S +       
Sbjct: 122 RAQLAAEERVLDALVGASASPATRDSFRKKLRAGELNDKEIEVETQASSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K+   GR K  R++V   +  L+ +E+D+L+D D +  ++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGKM--GGRTKTRRLTVADSHEILVNEEADKLLDSDQLTIEAINAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E +LI QY  L+ TEG+ L+F 
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEVSLIKQYVALLGTEGVTLEFG 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISFSA D   +T+ IDAE+V+ H+
Sbjct: 360 DDAIDALADVAVQVNSTVENIGARRLQTVMERVLDEISFSAPDRSGETIRIDAEFVQKHV 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|192288739|ref|YP_001989344.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris TIE-1]
 gi|238692578|sp|B3Q8B9|HSLU_RHOPT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|192282488|gb|ACE98868.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris TIE-1]
          Length = 433

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 264/434 (60%), Positives = 344/434 (79%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPG 183
           +A + AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE  A + S +       
Sbjct: 122 RAQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIETQAGSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K+   GR KK R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGKM--GGRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ LDF+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFQVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|39933383|ref|NP_945659.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris CGA009]
 gi|62286823|sp|Q6ND03|HSLU_RHOPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|39653008|emb|CAE25750.1| heat shock protein HslU, proteasome-related ATPase subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 433

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 264/434 (60%), Positives = 344/434 (79%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPG 183
           +A + AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE  A + S +       
Sbjct: 122 RAQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIETQAGSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K+   GR KK R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAVSLGDIFGKM--GGRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ LDF+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|86747529|ref|YP_484025.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris HaA2]
 gi|123099259|sp|Q2J346|HSLU_RHOP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|86570557|gb|ABD05114.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris HaA2]
          Length = 433

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 259/434 (59%), Positives = 341/434 (78%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPG 183
           +A I AEER+LDALVG  ++  TR+ FR+KLR GE++DKEI+IE  A   S +       
Sbjct: 122 RAQIAAEERVLDALVGPGSSPATRDSFRRKLRTGELNDKEIEIETQAGGGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +++ ++F K+   GR K  R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GGQIGAISIGDIFGKM--GGRTKTRRLTVVDSHDILVNEEADKLLDNDQLVQEAINAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  L++TEG+ L+F 
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALLQTEGVTLEFG 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF A D   +T+ IDA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFGAPDRGGETIRIDADYVQKNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|316931713|ref|YP_004106695.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris DX-1]
 gi|315599427|gb|ADU41962.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris DX-1]
          Length = 433

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/434 (60%), Positives = 342/434 (78%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPG 183
           +A I AEER+LDALVG  +   TR+ FRKKLR GE++DKEI+IE  A   S +       
Sbjct: 122 RAQIAAEERVLDALVGPGSGPATRDSFRKKLRSGELNDKEIEIETQAGAGSPMLEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K+   GR K  R++V   +  L+ +E+D+L+D D + +++I  VEN
Sbjct: 182 GAQIGAISLGDIFGKM--GGRTKTRRLTVADSHEILVNEEADKLLDNDQLVQEAITAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++VSTK+G++ T+HILF+ASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFVASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY  LMKTEG+ L+FT
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLEFT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T  +DA+YV+ ++
Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|209966551|ref|YP_002299466.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Rhodospirillum centenum SW]
 gi|238065802|sp|B6IWI0|HSLU_RHOCS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|209960017|gb|ACJ00654.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Rhodospirillum centenum SW]
          Length = 437

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 265/437 (60%), Positives = 344/437 (78%), Gaps = 5/437 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTGV
Sbjct: 2   TSFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLPEGLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDLV++AI + RE  R EV  
Sbjct: 62  GKTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLTRERLRKEVAS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG 183
           +A + AE+R+L+ALVG  A+  TR+ FRK LR+G+++D+EI+I+V DTS   +  FD+PG
Sbjct: 122 KAELRAEDRVLEALVGANASGETRQKFRKMLREGQLNDREIEIQVQDTSVQGLPTFDVPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA +G++NL ++F K +  GR K  RMSV + Y  LM +ESD+L+D + V  ++IQ V
Sbjct: 182 MPGAQMGMINLGDIFGKAL-GGRTKVRRMSVSESYDVLMAEESDKLLDQEKVVSEAIQSV 240

Query: 242 ENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           E  GIVFLDE DKI AR     G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIA
Sbjct: 241 EQNGIVFLDEIDKITARSEVRGGADVSREGVQRDLLPLIEGTTVNTKHGPVKTDHVLFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK+L++ DFR ILT+ E++LI QYK L+ TEG+ L
Sbjct: 301 SGAFHLAKPSDLLPELQGRLPIRVELKALSQEDFRRILTEPEASLIKQYKALLATEGMTL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFT+D ID LA +A ++N +V +IGARRL TV+ER+LE+ISF+ASD   ++V IDA YVR
Sbjct: 361 DFTDDGIDELARLAADINRSVENIGARRLHTVLERLLEEISFTASDRSGESVTIDAAYVR 420

Query: 421 LHIGDFPSETDMYHFIL 437
             +      TD+  FIL
Sbjct: 421 GQLQGLAQNTDLSKFIL 437


>gi|300024848|ref|YP_003757459.1| heat shock protein HslVU, ATPase HslU [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526669|gb|ADJ25138.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 435

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 339/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            NFSPREIVSELDRYI+GQQDAKRAVAIALRNRWRRQQL  +LRDE++PKNIL++GPTGV
Sbjct: 2   TNFSPREIVSELDRYIVGQQDAKRAVAIALRNRWRRQQLTGELRDEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ IIRDLV+V I +V+  +R +VR 
Sbjct: 62  GKTEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIIRDLVEVGIALVKNVKRQDVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A  +AEER++DALVG  ++  TRE FRKKLR+ E++DKEIDI VADT+  +  FD+PGG
Sbjct: 122 RAEKSAEERVIDALVGSGSSPATRESFRKKLRNNELNDKEIDILVADTAPQLPMFDLPGG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           AS+  +NL ++  K +   R K  R++V+  +  L+ DESD+LID D +  +++  V+N 
Sbjct: 182 ASMSTINLGDMLGKAL-GQRTKPRRVTVKDSFEILIADESDKLIDNDQITAEAVAAVQND 240

Query: 245 GIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           GIVFLDE DKI +R  G   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 241 GIVFLDEIDKICSRGDGTRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L +L + D + ILT+  ++LI QY  LM+TEG+ L+F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELNALTRDDLKRILTEPHASLIKQYVALMETEGVTLEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
             ++IDA+AD AV +NSTV +IGARRLQTV+ERVL+DISF ASD   +T+ ID  YV   
Sbjct: 361 KPEAIDAIADAAVEVNSTVENIGARRLQTVLERVLDDISFEASDRNGQTLAIDGAYVTQR 420

Query: 423 IGDFPSETDMYHFIL 437
           +G      D+  FIL
Sbjct: 421 VGQLSKNADLSRFIL 435


>gi|328545935|ref|YP_004306044.1| ATP-dependent protease ATPase HslU [polymorphum gilvum SL003B-26A1]
 gi|326415675|gb|ADZ72738.1| ATP-dependent protease ATPase subunit HslU [Polymorphum gilvum
           SL003B-26A1]
          Length = 434

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 349/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL + +R+E++PKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLESPMREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+  I++VRE+RR EV+ 
Sbjct: 62  GKTEISRRLARLANAPFVKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREARRQEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG +A+  TR+ FR+KLRDG++  KEI+IEV      + +F++PG 
Sbjct: 122 KAHVLAEERVLDALVGASASPATRDSFRRKLRDGDLDAKEIEIEV-RAQPQMPSFELPGM 180

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GASVG++N+SEL  K  GS   +  R+ V+  Y  L+ +ESD+L+D + + +++I +VE
Sbjct: 181 PGASVGVMNVSELLGKAFGS-HTRTRRVLVKDSYEILINEESDKLLDEEKIVQEAIALVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD   G  VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASG
Sbjct: 240 NAGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK L + DFR ILT+ E++LI QY  L+KTEG+ L+F
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELKPLTRDDFRSILTEPEASLIKQYVALLKTEGVALEF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+ID +A +AV+LN+TV +IGARRLQTVMER+L+++SF+A D   +TV IDA YVR +
Sbjct: 360 TDDAIDEIATIAVDLNATVENIGARRLQTVMERILDEVSFTAPDHDGRTVTIDAAYVRDN 419

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  FIL
Sbjct: 420 VGELAKNIDLSRFIL 434


>gi|254470703|ref|ZP_05084106.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp.
           JE062]
 gi|211959845|gb|EEA95042.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp.
           JE062]
          Length = 434

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 343/435 (78%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            NFSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL  +LR+E+ PKNIL++GPTGV
Sbjct: 2   TNFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDEELREEVQPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQIIRDLV+ AI +VRE  R +V  
Sbjct: 62  GKTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIIRDLVESAIALVREQSRKDVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  A+  TR+ FRKKLR+G++ ++EI+IEV   +  + +FDIPG 
Sbjct: 122 KAHVLAEERVLDALVGANASPATRDTFRKKLREGDLDEREIEIEV-RANPQMPSFDIPGM 180

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+SVG++N+S++  K    G+ K  R +V+  +  L+ +ESD+L+D + + +++I +VE
Sbjct: 181 PGSSVGVMNISDMLGKAF-GGQTKPKRTNVKDSHKVLLAEESDKLLDEEKIVQEAIALVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI A+D  NG  VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASG
Sbjct: 240 NSGIVFLDEIDKICAKDGRNGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV LK+L K DF  ILTDTE++LI QY  LM TE + ++F
Sbjct: 300 AFHVSKPSDLLPELQGRLPIRVELKALTKEDFVKILTDTEASLIKQYVALMGTESVTIEF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+ID +A +AV+LN+TV +IGARRLQTVMERVL++ISF+A D   + V IDA YV+ +
Sbjct: 360 TDDAIDEIATIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKSGEQVTIDAAYVKSN 419

Query: 423 IGDFPSETDMYHFIL 437
           + +     D+  FIL
Sbjct: 420 VSELAKNVDLSQFIL 434


>gi|89093515|ref|ZP_01166463.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
 gi|89082205|gb|EAR61429.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
          Length = 444

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/444 (52%), Positives = 320/444 (72%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDR+IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVSELDRHIIGQDEAKRSVAIALRNRWRRMQLDEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD+AI ++RE   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVETIIRDLVDMAIKMMREQEMEKVRFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEER+LDAL+              +  S TR+VFRKKLR+G++ DKEIDIE+A   
Sbjct: 123 AEEAAEERVLDALLPPARPTGFGEEPAKSEDSATRQVFRKKLREGQLDDKEIDIEIAQPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +FS  MG G+K++ RM ++  +  L  +E+  L+  D +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQSMFSG-MGGGKKQQRRMKIKDAFKMLTDEEAANLVKEDEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++++VE +GIVFLDE DK+    S +   VSREGVQRDLLPL+EG +VSTKYG + T
Sbjct: 241 KQNAVELVEQHGIVFLDEIDKVCKGGSNSSGDVSREGVQRDLLPLIEGCTVSTKYGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+++P+DL+PE+QGR P+RV L +L   DFR IL +  ++L  QY+ L+
Sbjct: 301 DHILFIASGAFHLAKPSDLIPELQGRLPIRVELNALTPDDFRRILKEPNASLTQQYQALL 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT++ I  +A++A ++N +  +IGARRL T+MER+LE++SF+ASD   +T+ 
Sbjct: 361 KTEGVDVVFTDEGISRIAELAFDVNESTENIGARRLHTMMERLLEELSFAASDCNGQTIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D  +V   + +   + D+ H+IL
Sbjct: 421 VDKAFVDQQLSELSKDEDLSHYIL 444


>gi|24375649|ref|NP_719692.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis
           MR-1]
 gi|32129630|sp|Q8E9U9|HSLU_SHEON RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24350563|gb|AAN57136.1|AE015849_3 heat shock protein HslVU, ATPase subunit HslU [Shewanella
           oneidensis MR-1]
          Length = 440

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/440 (52%), Positives = 311/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQR 122

Query: 126 ASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A  +AEERILDAL+ K           SNTR++FRKKLR+ ++ DKEIDI+VA     I 
Sbjct: 123 AEEHAEERILDALLPKPKNDWDDSDSNSNTRQIFRKKLRESQLDDKEIDIDVAQPQIGIE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +   +
Sbjct: 183 IMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I++VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHIL
Sbjct: 241 IELVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LM TEG
Sbjct: 301 FIASGAFQMSKPSDLIPELQGRLPIRVELDALTADDFKRILTEPHASLTEQYIALMATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           +I++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VIDA+
Sbjct: 361 VIIEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDAD 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ +   + D+  FIL
Sbjct: 421 YVSAHLDNLVQDEDLSRFIL 440


>gi|260431950|ref|ZP_05785921.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415778|gb|EEX09037.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 435

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/435 (57%), Positives = 330/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   RE  R+EV+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLTDAAIVQTREFMREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D  I++E+ADTS+ +  FDIPG 
Sbjct: 122 KAHQAAEDRVIEAIAGADAREATREMFRKKLKSGELDDTVIELELADTSNPMPMFDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NL ++F K    GR  K RM+V + Y  L+ +E+D+L+D + V R ++  VE
Sbjct: 182 PGSQMGMMNLGDIFGKAF-GGRMVKRRMTVAESYDILIGEEADKLLDDEAVTRAALDSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTENVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I ALA +A  +N +V +IGARRL TVMERV ED+SF+A D     +V+DA++V  +
Sbjct: 361 TDDGIAALARIAAEVNRSVENIGARRLYTVMERVFEDLSFAAPDKAGAEIVVDAQFVDDN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELTKSADLSRYVL 435


>gi|238794365|ref|ZP_04637976.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           intermedia ATCC 29909]
 gi|238726266|gb|EEQ17809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           intermedia ATCC 29909]
          Length = 443

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 303/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ ++  +  L+ +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKVKIKDAFKLLIEEEGAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVAFTPEGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  ++ D+  FIL
Sbjct: 421 DAEYVGKHLDELVADEDLSRFIL 443


>gi|254511353|ref|ZP_05123420.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium KLH11]
 gi|221535064|gb|EEE38052.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium KLH11]
          Length = 435

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/435 (57%), Positives = 335/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP D+RDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDIRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL D AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLADAAILQTREYMREDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D EI++E++DTS+ +  FDIPG 
Sbjct: 122 RAHQAAEDRVIEAIAGTDAREATREMFRKKLKAGELDDTEIELELSDTSNPMPMFDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  +G++NL ++F K    GR  + +M+V + Y  L+ +E+D+L+D +TV+R +++ VE
Sbjct: 182 PGGQMGMMNLGDIFGKAF-GGRTVRRKMTVAESYEALIGEEADKLLDDETVNRVALESVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A ++N ++ +IGARRL TVMERV ED+SF+A D     V +DA +V  +
Sbjct: 361 TEDGIAALARIAADVNQSIENIGARRLYTVMERVFEDLSFAAPDKAGTEVTVDAAFVNDN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+  S TD+  ++L
Sbjct: 421 LGELTSSTDLSRYVL 435


>gi|49475020|ref|YP_033061.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae
           str. Houston-1]
 gi|62286807|sp|Q6G5G0|HSLU_BARHE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49237825|emb|CAF27020.1| Heat shock protein hslU [Bartonella henselae str. Houston-1]
          Length = 436

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 274/434 (63%), Positives = 350/434 (80%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +RDE+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQSDAKRSVAIALRNRWRRQQLDGPMRDEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKVKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDISNFDIPG-- 183
            INAEER+LDALVGKTA+  TRE FRKKLRDGE+ +KEI+IEV+ + S+  S FDIPG  
Sbjct: 125 HINAEERVLDALVGKTASPATRESFRKKLRDGELDEKEIEIEVSDNNSNSTSTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLSE+F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 GAQMGIMNLSEIFGKM--GNRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YV+  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKKSI 422

Query: 424 GDFPSETDMYHFIL 437
           GD  ++ D+  FIL
Sbjct: 423 GDLAADVDLSRFIL 436


>gi|149912868|ref|ZP_01901402.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. AzwK-3b]
 gi|149813274|gb|EDM73100.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. AzwK-3b]
          Length = 435

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 247/435 (56%), Positives = 330/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRA A+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRATAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDYMREDVKS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R++ A+ G+ A  +TRE+FRKKLRDG + D  I+++VAD S+ +   DIPG 
Sbjct: 122 KAHQQAEDRVIAAIAGEDARDSTREMFRKKLRDGLLDDTVIELDVADQSNPLGMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NL ++F K    GR  + +M+V + Y  L+ +E+D+L+D DTVH+ +++ VE
Sbjct: 182 PGSQMGMMNLGDIFGKAF-GGRTVRKKMTVSESYEALISEEADKLLDDDTVHKTALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTEDVTVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D    TV +DA +V  +
Sbjct: 361 TEDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGDTVTVDAAFVDAN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELMKSADLSRYVL 435


>gi|188025489|ref|ZP_02958840.2| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827]
 gi|188023372|gb|EDU61412.1| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827]
          Length = 459

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/444 (51%), Positives = 307/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 18  EMTPREIVSELDNYIIGQNKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+   ++ R +
Sbjct: 78  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAVKMVRQQSIEKNRYR 137

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEVA    
Sbjct: 138 AEELAEERILDVLIPPAKNNWGQSEPVDEQSPARQSFRKKLREGQLDDKEIEIEVAAAPM 197

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M +++ +  L+ +E+ +L++ + + 
Sbjct: 198 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKMKIKEAFKLLVEEEAAKLVNPEELK 255

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG +VSTK+G + T
Sbjct: 256 EQAIEAVEQHGIVFIDEFDKICKRGGQTSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKT 315

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM
Sbjct: 316 DHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPSASLTEQYKALM 375

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT+D I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +T+ 
Sbjct: 376 ATEGVTIEFTDDGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASERNGQTIQ 435

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYVR H+ +  ++ D+  FIL
Sbjct: 436 IDAEYVRQHLDELVADEDLSRFIL 459


>gi|297180838|gb|ADI17043.1| ATP-dependent protease hslVU (clpYQ), ATPase subunit [uncultured
           alpha proteobacterium HF0010_30A23]
          Length = 437

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/437 (55%), Positives = 327/437 (74%), Gaps = 5/437 (1%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             NFSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRRQQL  +LR+E++PKNIL++GPTG
Sbjct: 3   NSNFSPREIVSELDRFIVGQADAKRAVAVALRNRWRRQQLADNLREEVLPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++AI   RE +RD V+
Sbjct: 63  CGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVELAITTTREQQRDAVK 122

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIP 182
            +A I AE+R++D L G  A ++T++ FRK LR+G++ D+E+++E+ D S     + DIP
Sbjct: 123 AKAEIIAEDRLIDVLTGAEANNDTKQKFRKMLREGKLDDREVEVELNDKSGGGFPSMDIP 182

Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           G  G+ +G++N+ E+   +    RK K ++ V + Y +L+ +E+D LID + + R +IQ 
Sbjct: 183 GMPGSQMGMINIGEMLGGL--GQRKVKRKLKVNEAYEQLVEEEADNLIDQEDLTRTAIQR 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VEN GIVFLDE DKI       G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFI 
Sbjct: 241 VENDGIVFLDEIDKIAVNSEVRGGSVSREGVQRDLLPLIEGTTVTTKYGPVKTDHVLFIC 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+S+P+DLLPE+QGR P+RV L  L + D + IL + E++L+ QY  L+ TEG+ L
Sbjct: 301 SGAFHLSKPSDLLPELQGRMPIRVELSPLTRDDLKRILVEPENSLVKQYVALLATEGVTL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DF + SIDALAD++  +N TV +IGARRL TVMER+LE+ISFSA D   +T+ I  + VR
Sbjct: 361 DFNDGSIDALADLSAEINQTVENIGARRLATVMERLLEEISFSAPDRSGETIQITEDKVR 420

Query: 421 LHIGDFPSETDMYHFIL 437
             +G+   + D+  FIL
Sbjct: 421 SEVGELAKDADLSRFIL 437


>gi|319408004|emb|CBI81658.1| heat shock protein [Bartonella schoenbuchensis R1]
          Length = 436

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 272/434 (62%), Positives = 352/434 (81%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ+DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVAD SS     FDIPG  
Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNSSNGTPTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI++LS++F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 GAQMGIMSLSDIFGKM--GTRTKIRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G G  VSREGVQRDLLPLVEG++V+TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATRDGGAGATVSREGVQRDLLPLVEGTTVATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YV+  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKQSI 422

Query: 424 GDFPSETDMYHFIL 437
           GD  ++ D+  FIL
Sbjct: 423 GDLAADVDLSRFIL 436


>gi|91974898|ref|YP_567557.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas
           palustris BisB5]
 gi|123749455|sp|Q13E33|HSLU_RHOPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91681354|gb|ABE37656.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas
           palustris BisB5]
          Length = 433

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/434 (58%), Positives = 344/434 (79%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGILREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI  VRE +R +V+ 
Sbjct: 62  GKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVRERKRKDVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG 183
           +A I AEER+LDALVG  ++  TR+ FR+KLR G+++DKEI++E   +S S +       
Sbjct: 122 RAQIAAEERVLDALVGPGSSPATRDSFRRKLRAGDLNDKEIEVETQASSGSPMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  +G +++ ++F K+   GR K  R++V   +  L+ +E+D+L+D D + +++I +VEN
Sbjct: 182 GGQIGAISIGDIFGKM--GGRTKTRRLTVADSHDILINEEADKLLDNDQLVQEAINVVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  RD  +G  VSREGVQRDLLPL+EG++V+TK+G++ T+HILFIASGA
Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTEHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  L++TEG+ L+F+
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALTRDDMRRILTEPEASLIKQYIALLQTEGVTLEFS 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D   +T+ IDA+YV+ ++
Sbjct: 360 DDAIDALADVAVGVNSTVENIGARRLQTVMERVLDEISFVAPDRGGETIRIDADYVQKNV 419

Query: 424 GDFPSETDMYHFIL 437
           GD    TD+  FIL
Sbjct: 420 GDLAKNTDLSRFIL 433


>gi|261819535|ref|YP_003257641.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium
           wasabiae WPP163]
 gi|261603548|gb|ACX86034.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           wasabiae WPP163]
          Length = 443

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQNKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +            TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKVKIKDAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V I
Sbjct: 361 TEGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|114045943|ref|YP_736493.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           MR-7]
 gi|123326942|sp|Q0HZL9|HSLU_SHESR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113887385|gb|ABI41436.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-7]
          Length = 442

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/442 (52%), Positives = 313/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQR 122

Query: 126 ASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  +AEERILDAL+ K           A SNTR++FRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEEHAEERILDALLPKPKNDWDSTDSDANSNTRQIFRKKLREGQLDDKEIDIDVAQPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 IEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 QAIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F E  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VID
Sbjct: 361 EGVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|85705741|ref|ZP_01036838.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
 gi|85669731|gb|EAQ24595.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
          Length = 435

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 253/435 (58%), Positives = 332/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMREDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER++ A+ G+ A   TRE+FRKKLRDG + D  ID+EVADTS+ +   DIPG 
Sbjct: 122 RAEHAAEERVITAIAGEDAREGTREMFRKKLRDGLLDDTMIDVEVADTSNPLGMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NL ++F K    GR    R+SV   Y  L+ +E+D+L+D + V+R +++ VE
Sbjct: 182 PGSQMGMMNLGDIFGKAF-GGRTTTKRVSVADSYALLIGEEADKLLDDEAVNRTALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L ++DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEADFVRILTETDNALTLQYTALMGTEEVTVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   ++VV+DA +V  +
Sbjct: 361 TEDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGESVVVDAAFVDTN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELMKSADLSRYVL 435


>gi|50123182|ref|YP_052349.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium
           atrosepticum SCRI1043]
 gi|62286796|sp|Q6CZ91|HSLU_ERWCT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49613708|emb|CAG77159.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Pectobacterium atrosepticum SCRI1043]
          Length = 443

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEEMAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAASPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKAHKVKIKDAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V+I
Sbjct: 361 TEGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVII 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRSHLDELVADEDLSRFIL 443


>gi|113971851|ref|YP_735644.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           MR-4]
 gi|117922132|ref|YP_871324.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           ANA-3]
 gi|123130042|sp|Q0HED0|HSLU_SHESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221610|sp|A0L1J9|HSLU_SHESA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113886535|gb|ABI40587.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-4]
 gi|117614464|gb|ABK49918.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp.
           ANA-3]
          Length = 442

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/442 (52%), Positives = 313/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQR 122

Query: 126 ASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  +AEERILDAL+ K            +SNTR++FRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEEHAEERILDALLPKPKNDWDNTDSDTSSNTRQIFRKKLREGQLDDKEIDIDVAQPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 IEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 QAIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F E  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD    + VID
Sbjct: 361 EGVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|319898329|ref|YP_004158422.1| heat shock protein [Bartonella clarridgeiae 73]
 gi|319402293|emb|CBI75832.1| heat shock protein [Bartonella clarridgeiae 73]
          Length = 435

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 271/433 (62%), Positives = 350/433 (80%), Gaps = 4/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RD V+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDGVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HINAEERVLDALVGKTASPVTRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +GI+NLS++F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN 
Sbjct: 185 AQMGIMNLSDIFGKM--GIRTKIRKATVRDAFKPLIDDESEKLLDQDQIIQEALRVAEND 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI  RD G G  VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGAF
Sbjct: 243 GIVFIDEIDKIATRDGGAGAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T+
Sbjct: 303 HVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYVALMATEEVHLEITD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  IG
Sbjct: 363 DAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSIG 422

Query: 425 DFPSETDMYHFIL 437
           +  S+ D+  FIL
Sbjct: 423 ELASDIDLSRFIL 435


>gi|163745124|ref|ZP_02152484.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161381942|gb|EDQ06351.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 435

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 251/435 (57%), Positives = 331/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQIIRDL+D +I + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIIRDLLDSSIVMTREFMREDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER++DA+ G  A   TRE+FRKKLR GE+ D  I++EVADTSS     DIPG 
Sbjct: 122 KAEQAAEERVIDAIAGTDARDGTREMFRKKLRSGELDDTMIELEVADTSSPFPMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G   G++NL +LF K M  GR  K R++V   Y  L+ +E+D+L+D + V+R +I+ VE
Sbjct: 182 PGGGAGMMNLGDLFGKAM-GGRTTKKRLAVADSYEVLLGEEADKLLDDEAVNRAAIEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG+ VSTKYG++ TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKYGAVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  L++TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTRQYTALLRTEELTVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE+ I ALA +A ++N++V +IGARRL TVMERV E++SF A D   + + +DA++V  +
Sbjct: 361 TEEGIAALAKIAADVNTSVENIGARRLYTVMERVFEEVSFDAPDRSGQEITVDADFVEKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELTRSTDLSRYVL 435


>gi|291619409|ref|YP_003522151.1| HslU [Pantoea ananatis LMG 20103]
 gi|291154439|gb|ADD79023.1| HslU [Pantoea ananatis LMG 20103]
 gi|327395732|dbj|BAK13154.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Pantoea
           ananatis AJ13355]
          Length = 445

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 311/445 (69%), Gaps = 15/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S+ R+ FRKKLR+G++ DKEI+I++A T  
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQTSEPSSARQSFRKKLREGQLDDKEIEIDLAATGP 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +D+I  VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + 
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK L
Sbjct: 301 TDHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ + FT+D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++V
Sbjct: 361 MNTEGVNIHFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRSGESV 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDAEYV  H+ +  ++ D+  FIL
Sbjct: 421 TIDAEYVGKHLDELVADEDLSRFIL 445


>gi|182677250|ref|YP_001831396.1| ATP-dependent protease ATP-binding subunit HslU [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|238691214|sp|B2ICL8|HSLU_BEII9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|182633133|gb|ACB93907.1| heat shock protein HslVU, ATPase subunit HslU [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 435

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 253/435 (58%), Positives = 337/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRR +L   +R+E++PKNIL++GPTG 
Sbjct: 2   TDFSPREIVSELDRYIVGQNDAKRAVAIALRNRWRRLKLEGAMREEVLPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+ AI +V+  +R  +  
Sbjct: 62  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVETAIVMVKAEKRKSLEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A  + EER+LDALVG  A   TR+ FRKKLRDG++ DKEI+IE+A  + ++  FD+P  
Sbjct: 122 KAHQSVEERLLDALVGANAAQTTRDSFRKKLRDGDLEDKEIEIELAQATGNLPMFDLPNM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA+VG +++ ++F+K +     K+ R +V++    L+ +ES++L+D + +   +I  VE
Sbjct: 182 PGAAVGAISIGDIFAKSL-GRSTKRRRSTVKEAREPLLAEESEKLMDQEQIIAQAIHSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+SV+TK+G+I TDHILFIASG
Sbjct: 241 NNGIVFLDEIDKICAREGRGGADVSREGVQRDLLPLIEGTSVATKHGTIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L  LN+ DFR ILT+TE +LI QY+ L+ TEG+ L F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELLPLNEEDFRRILTETEVSLIKQYEALLATEGVNLVF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T +++ +LA VAV +NS+V +IGARRLQTVMERVL+++S++A D   +T+ IDA YV  +
Sbjct: 361 TPEAVSSLAKVAVQVNSSVENIGARRLQTVMERVLDEVSYTAPDRSGQTITIDAAYVEKN 420

Query: 423 IGDFPSETDMYHFIL 437
           IGD    TD+  FIL
Sbjct: 421 IGDLAKNTDLSRFIL 435


>gi|53803703|ref|YP_114447.1| ATP-dependent protease ATP-binding subunit HslU [Methylococcus
           capsulatus str. Bath]
 gi|62286765|sp|Q606K1|HSLU_METCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|53757464|gb|AAU91755.1| heat shock protein HslVU, ATPase subunit HslU [Methylococcus
           capsulatus str. Bath]
          Length = 440

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/440 (51%), Positives = 304/440 (69%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+ A LRDE+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELDKHIVGQAEAKRAVAIALRNRWRRAQVGAPLRDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++R++   +V+ +
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLTDAAIKMIRQTETAKVQSR 122

Query: 126 ASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEER+LDALV   +T N         R+ FR+KLR GE++DKEI+I+V+     + 
Sbjct: 123 AEAAAEERVLDALVPHASTWNAGEEGDSPARQKFRQKLRAGELNDKEIEIDVSAAPIGVE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               P G       L  LF     +GR +  ++ V+     L  +E+ ++I+ + +   +
Sbjct: 183 IMAPP-GLEEMSSQLQNLFQN-FQAGRTRTRKLRVRDALKLLKEEEAGKMINEEEIKLRA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +  VE  GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG +VSTKYG+I TDHIL
Sbjct: 241 VHAVEQNGIVFLDELDKICKRADYGGPDVSREGVQRDLLPLVEGCTVSTKYGTIRTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGRFP+RV L  L+  DF  ILT+ +++L  QY  L+ TEG
Sbjct: 301 FIASGAFHLAKPSDLIPELQGRFPIRVELNPLSADDFVRILTEPDASLTAQYAALLATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+F + +I  +A ++  +N    +IGARRL TV+ER+LE+ISF A+D    ++ IDA 
Sbjct: 361 VNLEFADSAIRRIAQISWEVNERTENIGARRLHTVLERLLEEISFDAADRSGTSITIDAG 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+G    + D+  +IL
Sbjct: 421 YVDAHLGSLALDEDLSRYIL 440


>gi|319405092|emb|CBI78696.1| heat shock protein [Bartonella sp. AR 15-3]
          Length = 435

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 271/433 (62%), Positives = 350/433 (80%), Gaps = 4/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HINAEERVLDALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +GI+NLS+LF K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN 
Sbjct: 185 AQMGIMNLSDLFGKM--GVRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEND 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGAF
Sbjct: 243 GIVFIDEIDKIATRDGGATATVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T+
Sbjct: 303 HVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEITD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  IG
Sbjct: 363 DAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSIG 422

Query: 425 DFPSETDMYHFIL 437
           +  S+ D+  F+L
Sbjct: 423 ELASDIDLSRFVL 435


>gi|238760315|ref|ZP_04621457.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           aldovae ATCC 35236]
 gi|238701443|gb|EEP94018.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           aldovae ATCC 35236]
          Length = 443

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+   +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRQQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQADETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVDFTREGIRKIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  ++ D+  FIL
Sbjct: 421 DAEYVGKHLDELVADEDLSRFIL 443


>gi|114707003|ref|ZP_01439902.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537553|gb|EAU40678.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 433

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 273/435 (62%), Positives = 352/435 (80%), Gaps = 5/435 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            ++SPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL   LR+E+MPKNIL++GPTGV
Sbjct: 2   TDYSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEPGLREEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R+L+ALVGK+A+  T++ FRKKLR GE+ +KEID+EV+DTS+ +   DIPG 
Sbjct: 122 KAHKGAEDRVLEALVGKSASPATKDSFRKKLRSGELDEKEIDVEVSDTSNPMGGMDIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M   R K++R +V+  Y  L+ +ESD+L+D + + R++++ V+
Sbjct: 182 PGANIGVLNLSEMFGKAM--NRTKQVRTTVRDSYDLLIGEESDKLLDQEQLTREAVEAVQ 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DK+  +D G+  GVSREGVQRDLLPLVEG++V+TK+G + TDHILFIASG
Sbjct: 240 NNGIVFLDEIDKVANKD-GHSAGVSREGVQRDLLPLVEGTTVATKHGPVKTDHILFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L++L + DFR ILT+TE++LI QY  LMKTE + L  
Sbjct: 299 AFHVSKPSDLLPELQGRLPIRVELRALTREDFRRILTETEASLIKQYVALMKTENVTLHV 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALAD AV LN +V +IGARRLQTVMERVL+DISF A D   +T  IDA YV   
Sbjct: 359 TEDAIDALADTAVKLNGSVENIGARRLQTVMERVLDDISFEAPDKGGETYTIDAAYVHKA 418

Query: 423 IGDFPSETDMYHFIL 437
           +     +TD+  FIL
Sbjct: 419 LDGIAGDTDLSRFIL 433


>gi|307942727|ref|ZP_07658072.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp.
           TrichSKD4]
 gi|307773523|gb|EFO32739.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp.
           TrichSKD4]
          Length = 434

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 262/435 (60%), Positives = 349/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VR S+R+ V+ 
Sbjct: 62  GKTEIARRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRSSKREAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  A+ +TR+ FRKKLR+GE+ DKEI++EV    + + +FD+PG 
Sbjct: 122 KAHVLAEERVLDALVGSNASPSTRDSFRKKLREGELDDKEIEVEV-RAQAQMPSFDLPGM 180

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GASVG++N+S+L  K    G+ K  R +V + Y  L+ +ESD+L+D D +  +++ +VE
Sbjct: 181 PGASVGVMNVSDLLGKAF-GGQTKTKRTTVSESYDLLINEESDKLLDEDKIVSEAVSLVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR++ +G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILF+ASG
Sbjct: 240 NSGIVFLDEIDKICAREARSGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFVASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY  LMKTE + L F
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMKTEDLTLTF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE++ID +A VAV+LN++V +IGARRLQTVMER+L++ISF+A D   +T+ I A++VR +
Sbjct: 360 TEEAIDEIAQVAVDLNASVENIGARRLQTVMERILDEISFNAPDKSGETIEITADHVREN 419

Query: 423 IGDFPSETDMYHFIL 437
           IG+     D+  FIL
Sbjct: 420 IGELSKNVDLSKFIL 434


>gi|118590481|ref|ZP_01547883.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
 gi|118436944|gb|EAV43583.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
          Length = 434

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 262/434 (60%), Positives = 343/434 (79%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGVG
Sbjct: 3   DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLQGQMREEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VR+ +R+ V+ +
Sbjct: 63  KTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRDQKREAVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVGK A+  TR+ FR KLR+GE+ DKEI++EV    + + +FD+PG  
Sbjct: 123 AHMLAEERVLDALVGKNASPATRDSFRTKLRNGEMDDKEIEVEV-RAQAQMPSFDLPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASVG++N+S+L  K    G+ K  R +V   Y  L+ +ESD+L+D D V  ++I +VEN
Sbjct: 182 GASVGVMNVSDLLGKAF-GGQTKTKRTTVGDSYQMLINEESDKLLDDDKVVEEAISLVEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA
Sbjct: 241 SGIVFLDEIDKICAREGRAGADVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L++L+K DFR ILT+ E++LI QY  L+ TE + L FT
Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALDKDDFRAILTEPEASLIKQYVALLDTEKVKLSFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+ID +A +AV+LN++V +IGARRLQTVMER+L+++SF+A D   + V I  ++VR +I
Sbjct: 361 EDAIDEIATIAVDLNASVENIGARRLQTVMERILDEVSFTAPDRPGEEVEITGKFVRDNI 420

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 421 GDLAKNVDLSKFIL 434


>gi|240849874|ref|YP_002971262.1| heat shock protein HslU [Bartonella grahamii as4aup]
 gi|240266997|gb|ACS50585.1| heat shock protein HslU [Bartonella grahamii as4aup]
          Length = 436

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 271/434 (62%), Positives = 350/434 (80%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDE++E+A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEIKEKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVA + S+  S FDIPG  
Sbjct: 125 HVNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLS++  K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 GAQMGIMNLSDILGKM--GSRTKVRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++VSTKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTVSTKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YVR  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFTIDAAYVRKSI 422

Query: 424 GDFPSETDMYHFIL 437
           G+  ++ D+  FIL
Sbjct: 423 GELAADIDLSRFIL 436


>gi|121602788|ref|YP_989509.1| ATP-dependent protease ATP-binding subunit [Bartonella
           bacilliformis KC583]
 gi|166221461|sp|A1UU56|HSLU_BARBK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120614965|gb|ABM45566.1| heat shock protein HslVU, ATPase subunit HslU [Bartonella
           bacilliformis KC583]
          Length = 436

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 272/434 (62%), Positives = 352/434 (81%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ+DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPREIVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQIREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+E+A
Sbjct: 65  TEIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVQERA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            INAEER+L+ALVGKTA+  TR+ FR+KLR GE+ DKEI+IEVA+ S++    FDIPG  
Sbjct: 125 HINAEERVLEALVGKTASPATRDNFRQKLRAGELDDKEIEIEVANNSNNSAPTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLS++F K+   GR K  + +V+  +  L+ DES++L+D D + ++++ + EN
Sbjct: 185 GAQMGIMNLSDIFGKI--GGRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALCITEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  +D G G  +SREGVQRDLLPLVEG+ V+TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATQDGGAGAAISREGVQRDLLPLVEGTIVATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L +L K D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNALTKEDLRRILTEPEASLIKQYIALMATEDVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+ID LAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA YVR  +
Sbjct: 363 DDAIDTLADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDATYVRQSV 422

Query: 424 GDFPSETDMYHFIL 437
           G+  S+ D+  FIL
Sbjct: 423 GELASDVDLSRFIL 436


>gi|120600432|ref|YP_965006.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp.
           W3-18-1]
 gi|166221611|sp|A1RP57|HSLU_SHESW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120560525|gb|ABM26452.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp.
           W3-18-1]
 gi|319424864|gb|ADV52938.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           putrefaciens 200]
          Length = 442

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/442 (52%), Positives = 311/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R+ 
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQL 122

Query: 126 ASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  +AEERILDAL+ K             SNTR++FRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 IEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 QAIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD      VID
Sbjct: 361 EGVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|149201420|ref|ZP_01878395.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
 gi|149145753|gb|EDM33779.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
          Length = 435

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 254/435 (58%), Positives = 331/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDRYIIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRYIIGQKEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   R+  RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMRDDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER++ A+ G+ A   TR++FRKKLR+G + D  IDIEVADTSS +   DIPG 
Sbjct: 122 RAEQAAEERVITAIAGEDARQGTRDMFRKKLREGLLDDTMIDIEVADTSSPLGMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NL ++F K     R    R+SV   Y  L+ +E+D+L+D +TVHR +++ VE
Sbjct: 182 PGSQMGMMNLGDIFGKAF-GQRTTTKRVSVADSYALLIGEEADKLLDDETVHRTALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYTALMGTEEVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   +TV +DA +V  +
Sbjct: 361 TEDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGETVTVDAGFVEAN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELMRSADLSRYVL 435


>gi|317494767|ref|ZP_07953179.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917369|gb|EFV38716.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 443

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMVRMQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI++E+A +  
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIELELAASPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKARKIKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +VSTK+G + TD
Sbjct: 241 EQAINAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D +  +A+ A  +N +  +IGARRL T++ER++E+ISF ASD+  +TV I
Sbjct: 361 TEGLTINFTADGVRHIAEAAWRVNESAENIGARRLHTILERLVEEISFEASDMSGQTVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYVR H+ +  ++ D+  FIL
Sbjct: 421 DAEYVRNHLDELVADEDLSRFIL 443


>gi|152998996|ref|YP_001364677.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS185]
 gi|166221607|sp|A6WIH5|HSLU_SHEB8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|151363614|gb|ABS06614.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS185]
          Length = 442

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQR 122

Query: 126 ASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  +AEERILDAL+ K            +SNTR+VFRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEEHAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQIG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 VEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 QAIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMNT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F+E  ID++A  A  +N    +IGARRL TVME+++EDIS+ AS+      VID
Sbjct: 361 EGVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|307128948|ref|YP_003880964.1| molecular chaperone and ATPase of HslUV protease [Dickeya dadantii
           3937]
 gi|306526477|gb|ADM96407.1| molecular chaperone and ATPase component of HslUV protease [Dickeya
           dadantii 3937]
          Length = 443

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSMEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G + DKEI+IE+A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGSLDDKEIEIELAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKNRKIKIREAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++ED+S+ AS++  +TV I
Sbjct: 361 TEGVNITFLPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMHGQTVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRSHLDELVADEDLSRFIL 443


>gi|170749489|ref|YP_001755749.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688891|sp|B1M5N6|HSLU_METRJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170656011|gb|ACB25066.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           radiotolerans JCM 2831]
          Length = 437

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 259/436 (59%), Positives = 341/436 (78%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRQQLTGPLREEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + R+++R+ V+ 
Sbjct: 62  GKTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGLTRQAKREGVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
           +A   AE RILDALVG TA+  TR+ FR+KLR+ E+ DKE+++E+  ++   +  F+IPG
Sbjct: 122 KAEAAAENRILDALVGPTASQATRDSFRRKLRNSELDDKEVELELTSSAPAGMPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G +N+ ++  K +G  R K  R+ V+  Y  LM +ESD+L+D + + R++I+ V
Sbjct: 182 VPGASMGAINIGDMLGKALGGQRGKPRRILVRDAYAPLMAEESDKLVDDEALVREAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           EN GIVFLDE DKI AR+  +   VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIAS
Sbjct: 242 ENNGIVFLDEIDKICAREGRSSGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+PADLLPE+QGR P+RV L+ L   DF+ ILT TE++L+ Q   LM+TEG+ L 
Sbjct: 302 GAFHVSKPADLLPELQGRLPIRVELQPLTVDDFKQILTATEASLLKQTVALMETEGVTLT 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D++DALA VAV +NS+V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR 
Sbjct: 362 FTDDAVDALARVAVEVNSSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D  S  D+  FIL
Sbjct: 422 RVQDLASNADLSRFIL 437


>gi|227113220|ref|ZP_03826876.1| ATP-dependent protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 443

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEDRILDVLIPPAKNNWGQSESTQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKVKIKDAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V I
Sbjct: 361 TEGVNISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|317050064|ref|YP_004117712.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b]
 gi|316951681|gb|ADU71156.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b]
          Length = 443

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ + +
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRIQAIEKNKYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQPEHTAEPSAARQSFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIEAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT+D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   +++ I
Sbjct: 361 TEGVNVDFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRNGESITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVGKHLDQLVADEDLSRFIL 443


>gi|319403621|emb|CBI77206.1| heat shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 268/433 (61%), Positives = 350/433 (80%), Gaps = 4/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            +NAEER+L+ALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +GI+NLS++F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN 
Sbjct: 185 AQMGIMNLSDIFGKM--GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEND 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGAF
Sbjct: 243 GIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T+
Sbjct: 303 HVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEITD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  IG
Sbjct: 363 DAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSIG 422

Query: 425 DFPSETDMYHFIL 437
           +  S+ D+  F+L
Sbjct: 423 ELASDIDLSRFVL 435


>gi|227327579|ref|ZP_03831603.1| ATP-dependent protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|253686572|ref|YP_003015762.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259491376|sp|C6DHM6|HSLU_PECCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|251753150|gb|ACT11226.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 443

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAV+IALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEDRILDVLIPPAKNNWGQAESTPEPSAARQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKIKIKDAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++ED+S+ AS++  ++V I
Sbjct: 361 TEGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|238750844|ref|ZP_04612342.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           rohdei ATCC 43380]
 gi|238710988|gb|EEQ03208.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           rohdei ATCC 43380]
          Length = 443

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDGYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+   +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRQQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQADENQEPSATRQAFRKKLREGQLDDKEIEIDLAASPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV  H+ +  ++ D+  FIL
Sbjct: 421 DAAYVGKHLDELVADEDLSRFIL 443


>gi|251787764|ref|YP_003002485.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae
           Ech1591]
 gi|247536385|gb|ACT05006.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae
           Ech1591]
          Length = 443

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEENLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVAIKMVRQQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPEESHEPSAARQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKSRKIKIREAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++E++S+ AS++  +TV I
Sbjct: 361 TEGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEEVSYGASEMSGQTVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRSHLDELVADEDLSRFIL 443


>gi|319406537|emb|CBI80179.1| heat shock protein [Bartonella sp. 1-1C]
          Length = 435

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 269/433 (62%), Positives = 350/433 (80%), Gaps = 4/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
            +NAEER+L+ALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV D S+    FDIPG  G
Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +GI+NLS++F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN 
Sbjct: 185 AQMGIMNLSDIFGKM--GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEND 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI  RD G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGAF
Sbjct: 243 GIVFIDEIDKIATRDGGATAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY  LM TE + L+ T+
Sbjct: 303 HVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEITD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  +DA+YVR  IG
Sbjct: 363 DAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSIG 422

Query: 425 DFPSETDMYHFIL 437
           D  S+ D+  F+L
Sbjct: 423 DLASDIDLSRFVL 435


>gi|238786105|ref|ZP_04630061.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           bercovieri ATCC 43970]
 gi|238798294|ref|ZP_04641778.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           mollaretii ATCC 43969]
 gi|238712982|gb|EEQ05038.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           bercovieri ATCC 43970]
 gi|238717841|gb|EEQ09673.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           mollaretii ATCC 43969]
          Length = 443

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 303/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ ++  +  L+ +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKDAFKLLIEEEGAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESHGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV  H+ +  ++ D+  FIL
Sbjct: 421 DAAYVGKHLDELVADEDLSRFIL 443


>gi|49473863|ref|YP_031905.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana
           str. Toulouse]
 gi|62286804|sp|Q6G0P9|HSLU_BARQU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49239366|emb|CAF25699.1| Heat shock protein hslU [Bartonella quintana str. Toulouse]
          Length = 436

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 273/434 (62%), Positives = 349/434 (80%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPREIVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDGPMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A
Sbjct: 65  TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKVKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDISNFDIPG-- 183
            INAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVA + S+  S FDIPG  
Sbjct: 125 HINAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLSE+F K+    R K  + +V+  +  L+ DES++L+D D + ++++++ EN
Sbjct: 185 GAQMGIMNLSEIFGKM--GSRIKVRKTTVKDSFKPLIDDESEKLLDQDQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  RD      VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATRDGAVSAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM  E + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMAMEEVRLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YVR  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYVRQSI 422

Query: 424 GDFPSETDMYHFIL 437
           GD  ++ D+  FIL
Sbjct: 423 GDLAADLDLSRFIL 436


>gi|238764479|ref|ZP_04625427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           kristensenii ATCC 33638]
 gi|238697291|gb|EEP90060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           kristensenii ATCC 33638]
          Length = 443

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A +  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEGAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV  H+ +  ++ D+  FIL
Sbjct: 421 DAAYVGKHLDELVADEDLSRFIL 443


>gi|294638265|ref|ZP_06716518.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda
           ATCC 23685]
 gi|291088518|gb|EFE21079.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda
           ATCC 23685]
          Length = 443

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+GE+ DKEI+IE+A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQSNENSPARQSFRKKLREGELDDKEIEIELAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKIKIKDAFKQLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TD
Sbjct: 241 HQAIEAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + I
Sbjct: 361 TEGVNITFTADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMNGTAITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|332159730|ref|YP_004296307.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318603861|emb|CBY25359.1| ATP-dependent hsl protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325663960|gb|ADZ40604.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330858960|emb|CBX69322.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           enterocolitica W22703]
          Length = 443

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV  H+ +  ++ D+  FIL
Sbjct: 421 DAAYVGKHLDELVADEDLSRFIL 443


>gi|123440504|ref|YP_001004498.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|166221617|sp|A1JI08|HSLU_YERE8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122087465|emb|CAL10246.1| ATP-binding heat shock protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 443

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV  H+ +  ++ D+  FIL
Sbjct: 421 DAAYVGKHLDELVADEDLSRFIL 443


>gi|114769762|ref|ZP_01447372.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|114549467|gb|EAU52349.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|161170258|gb|ABX59228.1| ATP-dependent protease HslVU ClpYQ ATPase subunit [uncultured
           marine bacterium EB000_55B11]
 gi|297183787|gb|ADI19910.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 434

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/434 (53%), Positives = 329/434 (75%), Gaps = 2/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIVSELDR+IIGQ DAKR+VA+ALRNRWRR +L  D+RDE+ PKNIL++GPTGV
Sbjct: 2   TNLTPREIVSELDRFIIGQNDAKRSVAVALRNRWRRNKLDDDIRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI +++E++R++V  
Sbjct: 62  GKTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIVMIKENKREKVNA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPG 183
            A  NAE R+LDAL G  A   TR+VFRKKLR+G + DKEI++++ DT++ +    DIPG
Sbjct: 122 GAYNNAENRVLDALCGSDAREQTRDVFRKKLREGLLDDKEIELDLTDTTNPMGGMVDIPG 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
              +G++N+ E+F K M  GR  K ++ +   Y  L+ +E+D+L+D + V +++++ VE 
Sbjct: 182 QPGMGMMNIGEIFGKAM-GGRTIKRKIKIADSYKILIDEEADKLVDQEAVTKEAVEAVEA 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKVCAKTDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + FT
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELRALTEKDFVRILTETDNALTRQYSALMATENVDVSFT 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +  I ALA +A  +N ++ +IGARRL T++ERV E++SF+A D   +++ +D+++V  H+
Sbjct: 361 KGGIAALAKIAAEVNESIENIGARRLHTIIERVFEELSFTAPDRSGESIKVDSKFVEKHL 420

Query: 424 GDFPSETDMYHFIL 437
           G+     D+  ++L
Sbjct: 421 GELARSNDLSRYVL 434


>gi|237728044|ref|ZP_04558525.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter
           sp. 30_2]
 gi|226910301|gb|EEH96219.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter
           sp. 30_2]
          Length = 443

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVDINFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|146291635|ref|YP_001182059.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           putrefaciens CN-32]
 gi|166221609|sp|A4Y2S7|HSLU_SHEPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145563325|gb|ABP74260.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           putrefaciens CN-32]
          Length = 442

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/442 (52%), Positives = 310/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL  D R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE +  + R+ 
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQL 122

Query: 126 ASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  +AEERILDAL+ K             SNTR++FRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 IEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 QAIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +++P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FTE  I+++A  A  +N    +IGARRL TVME+++EDIS+ ASD      VID
Sbjct: 361 EGVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|254295470|ref|YP_003061493.1| heat shock protein HslVU, ATPase HslU [Hirschia baltica ATCC 49814]
 gi|254044001|gb|ACT60796.1| heat shock protein HslVU, ATPase subunit HslU [Hirschia baltica
           ATCC 49814]
          Length = 435

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 258/435 (59%), Positives = 338/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+QL  DLR+E+ PKNIL++GPTGV
Sbjct: 2   TEFSPREIVSELDRFIVGQADAKRAVALALRNRWRRKQLSDDLREEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ +I +V+E +  +VR 
Sbjct: 62  GKTEISRRLAKLAQAPFIKVEATKFTEVGYVGRDVEQIIRDLVEASIAMVKEEKSKDVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE R+LDALVG  A  +TRE F+ KLR G + DKEI+I+++D  S + + DIPG 
Sbjct: 122 RAESAAESRVLDALVGPDAKESTRESFQTKLRSGALDDKEIEIDLSDNGSPMQSMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G+LNL +L  K    GR K ++M+V+  Y  L+ DESD+L+D ++V RD+I++VE
Sbjct: 182 PGASMGMLNLGDLLGKGF-GGRTKTVKMTVKDAYRPLIDDESDKLVDQESVVRDAIKLVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+  R    G GVSREGVQRDLLPL+EG++VSTK+G++ TD+ILFIASG
Sbjct: 241 EEGIVFLDEIDKVATRQEAGGAGVSREGVQRDLLPLIEGTTVSTKHGAVKTDYILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT+ E++LI QY  L+  EG+ ++F
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELQGLTHEDFKRILTEPEASLIKQYIALIGAEGMTIEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            E SIDA+A++AV +N TV +IGARRL TV+ER+LE+ISF+A D   ++ VI A+YVR  
Sbjct: 361 DESSIDAIAEIAVQVNDTVENIGARRLHTVLERLLEEISFTAPDRSGESFVITADYVREK 420

Query: 423 IGDFPSETDMYHFIL 437
           +G +    D+  +IL
Sbjct: 421 VGGYAGNADLSKYIL 435


>gi|56698693|ref|YP_169070.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria pomeroyi
           DSS-3]
 gi|62286712|sp|Q5LLP0|HSLU_SILPO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56680430|gb|AAV97096.1| ATP-dependent hsl protease, ATP-binding subunit HslU [Ruegeria
           pomeroyi DSS-3]
          Length = 435

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/435 (56%), Positives = 328/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   R+  RDEVR 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAIVQTRDYMRDEVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R++ A+ G+ A   TRE+FRKKL+ GE+ D  I++EVAD ++ +  F+IPG 
Sbjct: 122 RAHKAAEDRVITAIAGEDAREGTREMFRKKLKSGELDDTVIELEVADGANPMPMFEIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL +LF K    GR  + ++ V   Y  L+ +E+D+L+D + V++ +++ VE
Sbjct: 182 PGGNMGMMNLGDLFGKAFA-GRTTRKKLRVADSYEILIGEEADKLLDDELVNKTALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG I TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTENVAVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T D I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   + V +DA +V  +
Sbjct: 361 TPDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRSGEAVTVDAGFVDTN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELTRSTDLSRYVL 435


>gi|86136743|ref|ZP_01055321.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
 gi|85826067|gb|EAQ46264.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
          Length = 437

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/437 (57%), Positives = 333/437 (76%), Gaps = 5/437 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V  
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIVQTREFMREDVTT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---- 180
           +A   AE+R++DAL G+ A   TREVFRKKL+ G++ D  I+++VAD+S+ + N      
Sbjct: 122 KAQKAAEDRVIDALAGEDAREITREVFRKKLKSGQLDDALIELDVADSSNPMGNMFDIPG 181

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            PGG ++G+LN+  L  K M  GR  + +M+V + Y  L+ DE+D+L+D + V R +I+ 
Sbjct: 182 QPGGGNMGVLNIGNLLGKAM-GGRTVRRKMTVAESYEVLISDEADKLLDDEVVTRAAIES 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIA
Sbjct: 241 VEQSGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHV++P+DLLPE+QGR P+RV+L+SL+++DF  ILT+T++ L LQY  LMKTE + +
Sbjct: 301 SGAFHVAKPSDLLPELQGRLPIRVNLRSLSETDFVRILTETDNALTLQYTALMKTEEVEV 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FTED I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + V ++A +V 
Sbjct: 361 TFTEDGIAALAKIAAEVNHSVENIGARRLYTVIERVFEELSFNAPDRGGEKVTVNASFVG 420

Query: 421 LHIGDFPSETDMYHFIL 437
            H+G+  S +D+  ++L
Sbjct: 421 KHLGELASRSDLSRYVL 437


>gi|253991723|ref|YP_003043079.1| ATP-dependent protease ATP-binding subunit HslU [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638498|emb|CAR67119.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783173|emb|CAQ86338.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus
           asymbiotica]
          Length = 443

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNYIIGQDKAKRAVAIALRNRWRRMQLNETLRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEIQSEPSAARQAFRKKLREGQLDDKEIEIDLATAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   + K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKHKSRKLKIKDAFKLLVEEEASKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+   ++V I
Sbjct: 361 TEGMNISFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISFEASERHGQSVDI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +A+YV+ H+ +  ++ D+  FIL
Sbjct: 421 NADYVKEHLDELVADEDLSRFIL 443


>gi|157963594|ref|YP_001503628.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           pealeana ATCC 700345]
 gi|189043921|sp|A8H956|HSLU_SHEPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157848594|gb|ABV89093.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella pealeana
           ATCC 700345]
          Length = 441

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/441 (53%), Positives = 311/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  L+ +E+ +LI+ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALTAGDFKRILTEPHASLTEQYIALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTED ID++A+ A  +N    +IGARRL TVMER++E++S+ ASD      VIDA
Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV+  + +   + D+  +IL
Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441


>gi|26250698|ref|NP_756738.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           CFT073]
 gi|91213473|ref|YP_543459.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UTI89]
 gi|110644267|ref|YP_671997.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           536]
 gi|117626197|ref|YP_859520.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|170683012|ref|YP_001746318.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           SMS-3-5]
 gi|191172723|ref|ZP_03034261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           F11]
 gi|215489262|ref|YP_002331693.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560998|ref|YP_002393911.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           S88]
 gi|218692215|ref|YP_002400427.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           ED1a]
 gi|218701364|ref|YP_002408993.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           IAI39]
 gi|218707557|ref|YP_002415076.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UMN026]
 gi|227885327|ref|ZP_04003132.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|237702964|ref|ZP_04533445.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|293407551|ref|ZP_06651470.1| hslU [Escherichia coli FVEC1412]
 gi|293413371|ref|ZP_06656032.1| heat shock protein HslVU [Escherichia coli B354]
 gi|298383299|ref|ZP_06992892.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia
           coli FVEC1302]
 gi|300899909|ref|ZP_07118117.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           198-1]
 gi|300938385|ref|ZP_07153132.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           21-1]
 gi|300975842|ref|ZP_07173191.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           45-1]
 gi|300986108|ref|ZP_07177722.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           200-1]
 gi|301022811|ref|ZP_07186652.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           69-1]
 gi|301048655|ref|ZP_07195667.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           185-1]
 gi|306813805|ref|ZP_07447981.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           NC101]
 gi|312969317|ref|ZP_07783519.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           2362-75]
 gi|331649785|ref|ZP_08350865.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M605]
 gi|331660486|ref|ZP_08361420.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA206]
 gi|331665586|ref|ZP_08366484.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA143]
 gi|331675426|ref|ZP_08376176.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA280]
 gi|331685671|ref|ZP_08386254.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H299]
 gi|32129633|sp|Q8FBC0|HSLU_ECOL6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|122421651|sp|Q1R3Y6|HSLU_ECOUT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|122957817|sp|Q0TAD3|HSLU_ECOL5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|166221478|sp|A1AIA6|HSLU_ECOK1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704522|sp|B7MI63|HSLU_ECO45 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704523|sp|B7NU74|HSLU_ECO7I RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704525|sp|B7NFN0|HSLU_ECOLU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704526|sp|B1LNN6|HSLU_ECOSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802305|sp|B7UNQ1|HSLU_ECO27 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802307|sp|B7N2S2|HSLU_ECO81 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|26111129|gb|AAN83312.1|AE016770_112 ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli CFT073]
 gi|91075047|gb|ABE09928.1| ATP-dependent hslVU protease ATP-binding subunit hslU [Escherichia
           coli UTI89]
 gi|110345859|gb|ABG72096.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli 536]
 gi|115515321|gb|ABJ03396.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|170520730|gb|ACB18908.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           SMS-3-5]
 gi|190907027|gb|EDV66628.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           F11]
 gi|215267334|emb|CAS11783.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218367767|emb|CAR05561.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli S88]
 gi|218371350|emb|CAR19182.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli IAI39]
 gi|218429779|emb|CAR10741.2| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli ED1a]
 gi|218434654|emb|CAR15587.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli UMN026]
 gi|222035643|emb|CAP78388.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli LF82]
 gi|226902901|gb|EEH89160.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|227837703|gb|EEJ48169.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|281181001|dbj|BAI57331.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE15]
 gi|284924031|emb|CBG37130.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Escherichia coli 042]
 gi|291425468|gb|EFE98507.1| hslU [Escherichia coli FVEC1412]
 gi|291468119|gb|EFF10617.1| heat shock protein HslVU [Escherichia coli B354]
 gi|294490881|gb|ADE89637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           IHE3034]
 gi|298276333|gb|EFI17853.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia
           coli FVEC1302]
 gi|300299522|gb|EFJ55907.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           185-1]
 gi|300306416|gb|EFJ60936.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           200-1]
 gi|300356537|gb|EFJ72407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           198-1]
 gi|300397360|gb|EFJ80898.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           69-1]
 gi|300410195|gb|EFJ93733.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           45-1]
 gi|300456655|gb|EFK20148.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           21-1]
 gi|305852803|gb|EFM53250.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           NC101]
 gi|307556074|gb|ADN48849.1| ATP-dependent hslVU protease ATP-binding subunit HslU [Escherichia
           coli ABU 83972]
 gi|307629006|gb|ADN73310.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           UM146]
 gi|312285864|gb|EFR13782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           2362-75]
 gi|312948506|gb|ADR29333.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315289638|gb|EFU49031.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           110-3]
 gi|315292703|gb|EFU52055.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           153-1]
 gi|315298416|gb|EFU57671.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           16-3]
 gi|320196805|gb|EFW71427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli WV_060327]
 gi|323189647|gb|EFZ74926.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           RN587/1]
 gi|323949421|gb|EGB45310.1| heat shock protein HslVU [Escherichia coli H252]
 gi|323954298|gb|EGB50083.1| heat shock protein HslVU [Escherichia coli H263]
 gi|323964284|gb|EGB59767.1| heat shock protein HslVU [Escherichia coli M863]
 gi|323974340|gb|EGB69469.1| heat shock protein HslVU [Escherichia coli TW10509]
 gi|324006727|gb|EGB75946.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           57-2]
 gi|324012498|gb|EGB81717.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           60-1]
 gi|327250569|gb|EGE62277.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           STEC_7v]
 gi|330908252|gb|EGH36771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli AA86]
 gi|331041418|gb|EGI13568.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M605]
 gi|331052435|gb|EGI24472.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA206]
 gi|331057271|gb|EGI29261.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA143]
 gi|331067486|gb|EGI38891.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA280]
 gi|331077142|gb|EGI48357.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H299]
          Length = 443

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 220/443 (49%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T+ I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|271502450|ref|YP_003335476.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech586]
 gi|270346005|gb|ACZ78770.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech586]
          Length = 443

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+   ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G + DKEI+IE+A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGLLDDKEIEIELAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKSRKIKIREAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM+
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + F  D I  +A+ A  +N    +IGARRL TV+ER++ED+S+ AS++  +TV I
Sbjct: 361 TEGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMNGQTVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRSHLDELVADEDLSRFIL 443


>gi|59712885|ref|YP_205661.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75353333|sp|Q5E2H3|HSLU_VIBF1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|59480986|gb|AAW86773.1| molecular chaperone and ATPase component of HslUV protease [Vibrio
           fischeri ES114]
          Length = 444

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/443 (49%), Positives = 302/443 (68%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A  +AE+RILD L+                S TR+ FRKKLR+G++ DKEI+++VA    
Sbjct: 123 AEEHAEDRILDILLPPARDAWGNNEEGNNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G    KK +M +      L  +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN+GIVF+DE DKI    + +   VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           H+LFI SGAF +++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QY  L+ 
Sbjct: 302 HMLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTADDFKRILTEPNASLTEQYIALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+   +++++
Sbjct: 362 TENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIV 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV   +G+  ++ D+  FIL
Sbjct: 422 DAEYVSSRLGELVADEDLSRFIL 444


>gi|167625772|ref|YP_001676066.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           halifaxensis HAW-EB4]
 gi|189043920|sp|B0TVV4|HSLU_SHEHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167355794|gb|ABZ78407.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           halifaxensis HAW-EB4]
          Length = 441

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/441 (53%), Positives = 312/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  L+ +E+ +LI+ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSAGDFKRILTEPHASLTEQYIALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTED ID++A+ A  +N    +IGARRL TVMER++E++SF ASD      VIDA
Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSFEASDKSGSVTVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV+  + +   + D+  +IL
Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441


>gi|157155037|ref|YP_001465425.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           E24377A]
 gi|191166396|ref|ZP_03028227.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B7A]
 gi|193063956|ref|ZP_03045042.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E22]
 gi|194427514|ref|ZP_03060063.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B171]
 gi|209921411|ref|YP_002295495.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           SE11]
 gi|218556493|ref|YP_002389407.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           IAI1]
 gi|218697645|ref|YP_002405312.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           55989]
 gi|260846649|ref|YP_003224427.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O103:H2 str. 12009]
 gi|293470244|ref|ZP_06664655.1| heat shock protein HslVU [Escherichia coli B088]
 gi|300819903|ref|ZP_07100087.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           107-1]
 gi|300825078|ref|ZP_07105173.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           119-7]
 gi|300921947|ref|ZP_07138096.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           182-1]
 gi|301328291|ref|ZP_07221407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           78-1]
 gi|307315162|ref|ZP_07594743.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W]
 gi|309796644|ref|ZP_07691050.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           145-7]
 gi|331670784|ref|ZP_08371620.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA271]
 gi|331680048|ref|ZP_08380710.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H591]
 gi|167017225|sp|A7ZUE6|HSLU_ECO24 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|226704524|sp|B7M6Y2|HSLU_ECO8A RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238065795|sp|B6I4S4|HSLU_ECOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802306|sp|B7LA28|HSLU_ECO55 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|157077067|gb|ABV16775.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E24377A]
 gi|190903496|gb|EDV63214.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B7A]
 gi|192929421|gb|EDV83029.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E22]
 gi|194414554|gb|EDX30827.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           B171]
 gi|209914670|dbj|BAG79744.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE11]
 gi|218354377|emb|CAV01135.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli 55989]
 gi|218363262|emb|CAR00907.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli IAI1]
 gi|257761796|dbj|BAI33293.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O103:H2 str. 12009]
 gi|291321454|gb|EFE60893.1| heat shock protein HslVU [Escherichia coli B088]
 gi|300421671|gb|EFK04982.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           182-1]
 gi|300522430|gb|EFK43499.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           119-7]
 gi|300527543|gb|EFK48605.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           107-1]
 gi|300845253|gb|EFK73013.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           78-1]
 gi|306905421|gb|EFN35957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W]
 gi|308119800|gb|EFO57062.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           145-7]
 gi|315063262|gb|ADT77589.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli W]
 gi|320198862|gb|EFW73460.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli EC4100B]
 gi|323161167|gb|EFZ47084.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E128010]
 gi|323182344|gb|EFZ67753.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1357]
 gi|323380673|gb|ADX52941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           KO11]
 gi|323943669|gb|EGB39775.1| heat shock protein HslVU [Escherichia coli H120]
 gi|324020556|gb|EGB89775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           117-3]
 gi|324115667|gb|EGC09603.1| heat shock protein HslVU [Escherichia coli E1167]
 gi|331062039|gb|EGI33962.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           TA271]
 gi|331072374|gb|EGI43707.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H591]
          Length = 443

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 220/443 (49%), Positives = 310/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T++I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTIII 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|27364751|ref|NP_760279.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio vulnificus
           CMCP6]
 gi|320155143|ref|YP_004187522.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           vulnificus MO6-24/O]
 gi|31340168|sp|Q8DCP4|HSLU_VIBVU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|61213544|sp|Q7MH56|HSLU_VIBVY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27360896|gb|AAO09806.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio vulnificus
           CMCP6]
 gi|319930455|gb|ADV85319.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           vulnificus MO6-24/O]
          Length = 443

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               TSNTR++FRKKLR+G++ DKEI+I VA    
Sbjct: 123 AEELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK ++ ++  +  L+ +E+ +L++ D + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQS-LAGNTSKKRKLKIKDAFKALIEEEAAKLVNQDELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A++      VI
Sbjct: 361 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+F  + D+  FIL
Sbjct: 421 DAAYVQQRLGEFVEDEDLSRFIL 443


>gi|238754734|ref|ZP_04616086.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           ruckeri ATCC 29473]
 gi|238707042|gb|EEP99407.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           ruckeri ATCC 29473]
          Length = 440

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/442 (50%), Positives = 303/442 (68%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +  R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIENNRYRA 120

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A     
Sbjct: 121 EELAEERILDVLIPPAKNNWGQPDESQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPMG 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  +    ++K  ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 181 VEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEAFKLLIEEEAAKLVNPEELKQ 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 239 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM T
Sbjct: 299 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALMAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DFT + I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   +++ ID
Sbjct: 359 EGVTIDFTAEGIRRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASESNGQSITID 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +  ++ D+  FIL
Sbjct: 419 AKYVGDHLDELVADEDLSRFIL 440


>gi|22124212|ref|NP_667635.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           KIM 10]
 gi|45439970|ref|NP_991509.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594455|ref|YP_068646.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806253|ref|YP_650169.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Antiqua]
 gi|108813908|ref|YP_649675.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Nepal516]
 gi|145601043|ref|YP_001165119.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Pestoides F]
 gi|150260792|ref|ZP_01917520.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125]
 gi|153950076|ref|YP_001399112.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418383|ref|YP_001604748.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           Angola]
 gi|165928396|ref|ZP_02224228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936245|ref|ZP_02224814.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011445|ref|ZP_02232343.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213726|ref|ZP_02239761.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402503|ref|ZP_02307957.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419213|ref|ZP_02310966.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425891|ref|ZP_02317644.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170026311|ref|YP_001722816.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis YPIII]
 gi|186893443|ref|YP_001870555.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927320|ref|YP_002345195.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis
           CO92]
 gi|229836219|ref|ZP_04456387.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Pestoides A]
 gi|229839958|ref|ZP_04460117.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842040|ref|ZP_04462195.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904434|ref|ZP_04519545.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Nepal516]
 gi|270488704|ref|ZP_06205778.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM
           D27]
 gi|294502201|ref|YP_003566263.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|21759180|sp|Q8ZJJ5|HSLU_YERPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286788|sp|Q66G85|HSLU_YERPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123073081|sp|Q1CD55|HSLU_YERPN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123246016|sp|Q1CBE8|HSLU_YERPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221618|sp|A4TS84|HSLU_YERPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166879495|sp|A7FCY4|HSLU_YERP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238687319|sp|A9R6C7|HSLU_YERPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238688484|sp|B1JQ76|HSLU_YERPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238691341|sp|B2JZC5|HSLU_YERPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21956973|gb|AAM83886.1|AE013628_9 heat shock protein, ATPase subunit [Yersinia pestis KIM 10]
 gi|45434825|gb|AAS60386.1| ATP-binding heat shock protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51587737|emb|CAH19337.1| ATP-binding heat shock protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777556|gb|ABG20075.1| ATP-binding heat shock protein [Yersinia pestis Nepal516]
 gi|108778166|gb|ABG12224.1| ATP-binding heat shock protein [Yersinia pestis Antiqua]
 gi|115345931|emb|CAL18793.1| ATP-binding heat shock protein [Yersinia pestis CO92]
 gi|145212739|gb|ABP42146.1| ATP-binding heat shock protein [Yersinia pestis Pestoides F]
 gi|149290200|gb|EDM40277.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125]
 gi|152961571|gb|ABS49032.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351198|gb|ABX85146.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           Angola]
 gi|165915859|gb|EDR34467.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919578|gb|EDR36911.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989591|gb|EDR41892.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205128|gb|EDR49608.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963207|gb|EDR59228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048119|gb|EDR59527.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055039|gb|EDR64838.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752845|gb|ACA70363.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis YPIII]
 gi|186696469|gb|ACC87098.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678552|gb|EEO74657.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Nepal516]
 gi|229690350|gb|EEO82404.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696324|gb|EEO86371.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706667|gb|EEO92673.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis Pestoides A]
 gi|262360280|gb|ACY57001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262364227|gb|ACY60784.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270337208|gb|EFA47985.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM
           D27]
 gi|294352660|gb|ADE63001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|320013458|gb|ADV97029.1| molecular chaperone and ATPase component of HslUV protease
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 443

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEALKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTIEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESSGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  ++ D+  FIL
Sbjct: 421 DAEYVGKHLDELVADEDLSRFIL 443


>gi|91794710|ref|YP_564361.1| ATP-dependent protease ATP-binding subunit [Shewanella
           denitrificans OS217]
 gi|122968444|sp|Q12IT8|HSLU_SHEDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91716712|gb|ABE56638.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           denitrificans OS217]
          Length = 441

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 301/441 (68%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ  AKRAVA+ALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRFR 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEIDI++A     +
Sbjct: 123 AEELAEERILDALLPKAKEDWDSEKKDDSGTRQIFRKKLREGQLDDKEIDIDIAAPQIGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G    K+ ++ ++  + +L+ DE+ +L++ + +   
Sbjct: 183 EIMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAFKQLIEDEAAKLVNQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I +VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHI
Sbjct: 241 AIDLVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L  L  +DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + F E  ID LA+ A  +N    +IGARRL TVME+++EDISF ASD      VIDA
Sbjct: 361 GVTISFLESGIDKLAEAAWQVNERTENIGARRLHTVMEKLMEDISFDASDKSGSAFVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+     + D+  FIL
Sbjct: 421 DYVTEHLDTLVQDEDLSRFIL 441


>gi|212633356|ref|YP_002309881.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           piezotolerans WP3]
 gi|226704531|sp|B8CI18|HSLU_SHEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|212554840|gb|ACJ27294.1| Heat shock protein HslU [Shewanella piezotolerans WP3]
          Length = 441

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMAKCKFR 122

Query: 126 ASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K              TR+VFRKKLR+G++ DKEI+I++A   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDNEKPSDNATRQVFRKKLREGQLDDKEIEIDIAAPQAGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ +  L+ +E+ +L++ D +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAHKLLIEEEAAKLVNADDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELEALSADDFKRILTEPHASLTEQYVALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F +  IDA+A+ A  +N    +IGARRL TVMER++E++S+ ASD      V+DA
Sbjct: 361 GVEVEFKDSGIDAIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVVDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+ H+ +   + D+  FIL
Sbjct: 421 DYVKAHLDNLVQDEDLSRFIL 441


>gi|170769640|ref|ZP_02904093.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii
           TW07627]
 gi|170121448|gb|EDS90379.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii
           TW07627]
          Length = 443

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +T+ I
Sbjct: 361 TEGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|127511308|ref|YP_001092505.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica
           PV-4]
 gi|166221608|sp|A3Q9U8|HSLU_SHELP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126636603|gb|ABO22246.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella loihica
           PV-4]
          Length = 441

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/441 (52%), Positives = 312/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ+AKR+VAIALRNRWRR QL A LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQNAKRSVAIALRNRWRRMQLDAALRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDAAVKLTREEQMAKCKFR 122

Query: 126 ASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K              TR+VFRKKLR+G++ DKEI+I++A     I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDTEKKDDTGTRQVFRKKLREGQLDDKEIEIDIAAPQVGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M++++ Y  L+ +E+ +L++ D +   
Sbjct: 183 EIMSPPGMEEM-TSQLQSMFQN-MGPGASKRRKMTIKEAYKLLIEEEAAKLVNPDDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L++L+ +DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELEALSANDFKRILTEPHASLTEQYVALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F+E  I+ +A  A  +N    +IGARRL TVMER++ED+SF ASD    T VIDA
Sbjct: 361 GVKVEFSESGIERIAQAAWQVNERTENIGARRLHTVMERLMEDLSFEASDKSGSTTVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 421 DYVNAHLENLVQDEDLSRFIL 441


>gi|238921643|ref|YP_002935158.1| ATP-dependent protease HslVU, ATPase subunit, [Edwardsiella
           ictaluri 93-146]
 gi|259491372|sp|C5BB81|HSLU_EDWI9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238871212|gb|ACR70923.1| ATP-dependent protease HslVU, ATPase subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 443

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTA-----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               +S  R+ FRKKLR+GE+ DKEI+IE+A +  
Sbjct: 123 AEEMAEERILDALIPPAKNNWGQTEQTNESSPARQTFRKKLREGELDDKEIEIELAASPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TD
Sbjct: 241 QQAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + F+ D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + I
Sbjct: 361 TEGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGTAIAI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|37681200|ref|NP_935809.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus
           YJ016]
 gi|37199951|dbj|BAC95780.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio vulnificus
           YJ016]
          Length = 445

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 5   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 65  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 124

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               TSNTR++FRKKLR+G++ DKEI+I VA    
Sbjct: 125 AEELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQM 184

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK ++ ++  +  L+ +E+ +L++ D + 
Sbjct: 185 GVEIMAPPGMEEM-TNQLQGMFQS-LAGNTSKKRKLKIKDAFKALIEEEAAKLVNQDELK 242

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 243 EQAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 302

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY  LMK
Sbjct: 303 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMK 362

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A++      VI
Sbjct: 363 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVI 422

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+F  + D+  FIL
Sbjct: 423 DAAYVQQRLGEFVEDEDLSRFIL 445


>gi|7245635|pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245636|pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245637|pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245638|pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
           Escherichia Coli
 gi|7245733|pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245734|pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245735|pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245736|pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245737|pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
 gi|7245738|pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
           From Escherichia Coli
          Length = 442

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 2   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 61

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 62  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 121

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 122 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 181

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 182 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 239

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 240 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 299

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 300 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 359

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 360 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 420 DADYVSKHLDALVADEDLSRFIL 442


>gi|11513635|pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
 gi|11513636|pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
 gi|17942585|pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942586|pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942591|pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942592|pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942603|pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942604|pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942605|pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942606|pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942611|pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
 gi|17942612|pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
           Associated Atpase Hslu
          Length = 449

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 9   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 69  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 128

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 129 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 188

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 189 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 246

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 247 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 306

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 307 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 366

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 367 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 426

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 427 DADYVSKHLDALVADEDLSRFIL 449


>gi|126176059|ref|YP_001052208.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS155]
 gi|160873586|ref|YP_001552902.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS195]
 gi|217971678|ref|YP_002356429.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica
           OS223]
 gi|304411507|ref|ZP_07393120.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS183]
 gi|307306717|ref|ZP_07586459.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           BA175]
 gi|166221606|sp|A3D9C6|HSLU_SHEB5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043919|sp|A9KYP8|HSLU_SHEB9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802317|sp|B8E6E3|HSLU_SHEB2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|125999264|gb|ABN63339.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS155]
 gi|160859108|gb|ABX47642.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS195]
 gi|217496813|gb|ACK45006.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS223]
 gi|304350034|gb|EFM14439.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS183]
 gi|306910685|gb|EFN41114.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           BA175]
 gi|315265814|gb|ADT92667.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica
           OS678]
          Length = 442

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/442 (52%), Positives = 313/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL  D R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TK+TE+GYVG+ VEQIIRDL D+AI + RE +  + R++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKYTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQR 122

Query: 126 ASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  NAEERILDAL+ K            +SNTR+VFRKKLR+G++ DKEIDI+VA     
Sbjct: 123 AEENAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   MG    K+ +M +++ +  L+ +E+ +L++ + +  
Sbjct: 183 VEIMSPPGMEEM-TNQLQSLFKN-MGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+MVE +GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 241 QAIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLIEGCTVTTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L +L+ +DF+ ILT+  ++L  QY  LM T
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELDALSANDFKRILTEPHASLTEQYIALMNT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F+E  ID++A  A  +N    +IGARRL TVME+++EDIS+ AS+      VID
Sbjct: 361 EGVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+ +   + D+  FIL
Sbjct: 421 ADYVSAHLDNLVQDEDLSRFIL 442


>gi|300714743|ref|YP_003739546.1| ATP-dependent hsl protease ATP-binding protein HslU [Erwinia
           billingiae Eb661]
 gi|299060579|emb|CAX57686.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           billingiae Eb661]
          Length = 443

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ +AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDNAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSALKMVRSQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G+++DKEI+I++A +S 
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQSEAEAAPSAARQSFRKKLREGQLNDKEIEIDLASSSM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G+ ++K  ++ +Q+    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TNQLQSMFQN-LGNQKQKPRKLKIQEAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LMK
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTHDFERILTEPSASVTVQYKALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  ++  I
Sbjct: 361 TEGVDIHFTEDGISKIAAAAWQVNETAENIGARRLHTVLERLMEDISYDASDLNGQSFTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  ++ D+  FIL
Sbjct: 421 DAEYVGKHLDELVADEDLSRFIL 443


>gi|284008945|emb|CBA75815.1| ATP-dependent Hsl protease, ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 455

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 15  EMTPREIVNELDNHIIGQDKAKRSVAIALRNRWRRMQLDEALRQEVTPKNILMIGPTGVG 74

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 75  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYR 134

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+GE+ DKEI+IEVA T  
Sbjct: 135 AEELAEERILDVLLPPAKNNWGQPDPHVEPSTARQSFRKKLREGELDDKEIEIEVATTPV 194

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   + K  +M +++ +  L+ +E+ +L++ + + 
Sbjct: 195 GVEIMAPPGMEEM-TSQLQSMFQN-LAGQKHKPRKMKIKEAFKTLIEEEAAKLVNPEELK 252

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 253 QQAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 312

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L +QYK LM 
Sbjct: 313 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFNRILTEPNASLTIQYKALMA 372

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT + I  +A  A  +N    +IGARRL TV+ER++EDISF AS+   + + I
Sbjct: 373 TEGLNIEFTPEGIGKIAQAAWQVNEKTENIGARRLHTVLERLMEDISFDASERNGQNIKI 432

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+ +  ++ D+  FIL
Sbjct: 433 DADYVAKHLDELVADEDLSRFIL 455


>gi|114571522|ref|YP_758202.1| ATP-dependent protease ATP-binding subunit HslU [Maricaulis maris
           MCS10]
 gi|122314939|sp|Q0AKC9|HSLU_MARMM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114341984|gb|ABI67264.1| heat shock protein HslVU, ATPase subunit HslU [Maricaulis maris
           MCS10]
          Length = 435

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 249/435 (57%), Positives = 338/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +F+PREIVSELDR+I+GQ DAK+AVAIALRNRWRR+QL   L +E+ PKNIL++GPTGV
Sbjct: 2   TDFTPREIVSELDRFIVGQADAKKAVAIALRNRWRRRQLDDALAEEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI RDLV++AINIVRE++R++V+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIARDLVEIAINIVRETKREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE R++DALVG  ++  TRE FRK+L  GE+ DK+++I++AD+ + +   DIPG 
Sbjct: 122 KAHAAAENRVVDALVGPNSSEATRESFRKRLLAGELDDKDVEIQLADSGAGMQMLDIPGM 181

Query: 185 --ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                G++N+ ++  K     + K +RM V+  Y  L+ +E+D+L+D   +  D+I++ E
Sbjct: 182 PTGGAGVINIGDILGKGF-GQKTKTVRMKVKDAYEPLINEEADKLLDDSQITADAIKLAE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+GSI TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARSDARGGDVSREGVQRDLLPLIEGTTVATKHGSIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+D+LPE+QGR P+RV L +L+++D + IL + E++LI QY  L+ TEG+ LDF
Sbjct: 301 AFHVAKPSDMLPELQGRLPIRVELSALSEADLKRILVEPEASLIKQYVGLLATEGVSLDF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALA +A + N++V +IGARRLQTVME+++EDISF+ASD   + + IDA+YV  H
Sbjct: 361 TDDAIDALAKLAADFNASVENIGARRLQTVMEKLVEDISFTASDRSGQEITIDADYVAEH 420

Query: 423 IGDFPSETDMYHFIL 437
           +G      D+  FIL
Sbjct: 421 VGTLAKNADLSKFIL 435


>gi|283787388|ref|YP_003367253.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Citrobacter rodentium ICC168]
 gi|282950842|emb|CBG90519.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Citrobacter rodentium ICC168]
          Length = 443

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQQSEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|269140778|ref|YP_003297479.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|267986439|gb|ACY86268.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|304560538|gb|ADM43202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Edwardsiella
           tarda FL6-60]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTA-----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               +S  R+ FRKKLR+GE+ DKEI+IE+A +  
Sbjct: 123 AEEMAEERILDALIPPAKNNWGQTEQANESSPARQTFRKKLREGELDDKEIEIELAASPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  + K  ++ ++  + +L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TD
Sbjct: 241 QQAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS PADL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + F+ D I  +A+ A  +N +  +IGARRL TVMER++E+ISF AS++    + I
Sbjct: 361 TEGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGAAIAI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRNHLDELVADEDLSRFIL 443


>gi|238789597|ref|ZP_04633381.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           frederiksenii ATCC 33641]
 gi|238722350|gb|EEQ14006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia
           frederiksenii ATCC 33641]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 303/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ ++  +  L+ +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKDAFKLLIEEEGAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++F+ + I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTVEFSREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+ +  ++ D+  FIL
Sbjct: 421 DAEYVGKHLDELVADEDLSRFIL 443


>gi|218551085|ref|YP_002384876.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia
           fergusonii ATCC 35469]
 gi|226704527|sp|B7LUS3|HSLU_ESCF3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|218358626|emb|CAQ91276.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia fergusonii ATCC 35469]
 gi|324111448|gb|EGC05429.1| heat shock protein HslVU [Escherichia fergusonii B253]
 gi|325499331|gb|EGC97190.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia
           fergusonii ECD227]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 220/443 (49%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  +++ I
Sbjct: 361 TEGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|197334659|ref|YP_002157073.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri
           MJ11]
 gi|238690269|sp|B5FBL8|HSLU_VIBFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|197316149|gb|ACH65596.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri
           MJ11]
          Length = 444

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/443 (49%), Positives = 303/443 (68%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A  +AE+RILD L+                S TR+ FRKKLR+G++ DKEI+++VA    
Sbjct: 123 AEEHAEDRILDILLPPARDAWGNNEEGDNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G    KK +M +      L  +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN+GIVF+DE DKI    + +   VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           H+LFI SGAF +++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QY  L+ 
Sbjct: 302 HMLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+   +++++
Sbjct: 362 TENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIV 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV   +G+  ++ D+  FIL
Sbjct: 422 DAEYVSSRLGELVADEDLSRFIL 444


>gi|110677840|ref|YP_680847.1| ATP-dependent protease ATP-binding subunit HslU [Roseobacter
           denitrificans OCh 114]
 gi|122973096|sp|Q16CY2|HSLU_ROSDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109453956|gb|ABG30161.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter denitrificans OCh 114]
          Length = 435

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 249/435 (57%), Positives = 334/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+  RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDHMRDDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A   AEER++ A+ G+ A  +TRE+FRKKL+ G++ D  I+++VADTSS     DIPG 
Sbjct: 122 NAHQAAEERVITAIAGEDARESTREMFRKKLKAGDLDDTVIELDVADTSSPFPMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL ++F K +  GR  + +M+V + Y  L+ +E+D+L+D +TV+R +I+ VE
Sbjct: 182 PGGNMGMMNLGDIFGKAL-GGRTTRKKMTVSQSYDILIGEEADKLLDDETVNRAAIEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCAKSDTRGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SFSA D   + +++DA +V  +
Sbjct: 361 TEDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAGEEIIVDAAFVDEN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G     TD+  ++L
Sbjct: 421 LGALAKSTDVSRYVL 435


>gi|15804522|ref|NP_290562.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 EDL933]
 gi|15834112|ref|NP_312885.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131769|ref|NP_418366.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24115225|ref|NP_709735.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           2a str. 301]
 gi|30064776|ref|NP_838947.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           2a str. 2457T]
 gi|74314431|ref|YP_312850.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sonnei
           Ss046]
 gi|82546280|ref|YP_410227.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii
           Sb227]
 gi|89110098|ref|AP_003878.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. W3110]
 gi|110807792|ref|YP_691312.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri
           5 str. 8401]
 gi|157163406|ref|YP_001460724.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           HS]
 gi|168748769|ref|ZP_02773791.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755617|ref|ZP_02780624.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761683|ref|ZP_02786690.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768235|ref|ZP_02793242.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775231|ref|ZP_02800238.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780850|ref|ZP_02805857.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786789|ref|ZP_02811796.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC869]
 gi|168799486|ref|ZP_02824493.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC508]
 gi|170022058|ref|YP_001727012.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           ATCC 8739]
 gi|170083401|ref|YP_001732721.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188494098|ref|ZP_03001368.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           53638]
 gi|193068001|ref|ZP_03048966.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E110019]
 gi|194433247|ref|ZP_03065528.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1012]
 gi|194438349|ref|ZP_03070440.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           101-1]
 gi|195937575|ref|ZP_03082957.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809015|ref|ZP_03251352.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813147|ref|ZP_03254476.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819441|ref|ZP_03259761.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4042]
 gi|217325487|ref|ZP_03441571.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. TW14588]
 gi|238902997|ref|YP_002928793.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli BW2952]
 gi|253775430|ref|YP_003038261.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039192|ref|ZP_04873242.1| heat shock protein hslU [Escherichia sp. 1_1_43]
 gi|254163881|ref|YP_003046989.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli B
           str. REL606]
 gi|254795933|ref|YP_003080770.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021576|ref|ZP_05435441.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sp. D9]
 gi|256026031|ref|ZP_05439896.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia sp.
           4_1_40B]
 gi|260857668|ref|YP_003231559.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O26:H11 str. 11368]
 gi|260870650|ref|YP_003237052.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O111:H- str. 11128]
 gi|261223565|ref|ZP_05937846.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257327|ref|ZP_05949860.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285346|ref|YP_003502164.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli O55:H7 str. CB9615]
 gi|293417436|ref|ZP_06660060.1| heat shock protein HslVU [Escherichia coli B185]
 gi|300906259|ref|ZP_07123968.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           84-1]
 gi|300919129|ref|ZP_07135666.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           115-1]
 gi|300931627|ref|ZP_07146937.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           187-1]
 gi|300948289|ref|ZP_07162404.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           116-1]
 gi|301024060|ref|ZP_07187775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           196-1]
 gi|301303409|ref|ZP_07209533.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           124-1]
 gi|307140629|ref|ZP_07499985.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           H736]
 gi|312971781|ref|ZP_07785955.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1827-70]
 gi|331644669|ref|ZP_08345788.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H736]
 gi|331655629|ref|ZP_08356621.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M718]
 gi|332282817|ref|ZP_08395230.1| heat shock protein HslVU [Shigella sp. D9]
 gi|62288339|sp|P0A6H5|HSLU_ECOLI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62288340|sp|P0A6H6|HSLU_ECO57 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62288341|sp|P0A6H7|HSLU_SHIFL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123342247|sp|Q0SY58|HSLU_SHIF8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123769360|sp|Q31U59|HSLU_SHIBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|123773413|sp|Q3YV47|HSLU_SHISS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|167017226|sp|A8A737|HSLU_ECOHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|189043910|sp|B1IVE8|HSLU_ECOLC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|229486075|sp|B1XB97|HSLU_ECODH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|259491371|sp|C5A098|HSLU_ECOBW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|13399751|pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399752|pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399757|pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399758|pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399759|pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|13399760|pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
           Reveal An Atp-Dependent Proteolysis Mechanism
 gi|73535732|pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
           Crystal Containing Lattice Translocation Defects
 gi|73535733|pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
           Crystal Containing Lattice Translocation Defects
 gi|12518837|gb|AAG59126.1|AE005624_2 heat shock protein hslVU, ATPase subunit, homologous to chaperones
           [Escherichia coli O157:H7 str. EDL933]
 gi|305034|gb|AAB03063.1| matches PS00017: ATP_GTP_A; similar to Pasteurella haemolytica
           hypoth. protein ORF1; heat shock induced [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1790366|gb|AAC76913.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13364334|dbj|BAB38281.1| heat shock protein HslU [Escherichia coli O157:H7 str. Sakai]
 gi|24054510|gb|AAN45442.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str.
           301]
 gi|30043036|gb|AAP18758.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str.
           2457T]
 gi|73857908|gb|AAZ90615.1| heat shock protein hslVU ATPase subunit [Shigella sonnei Ss046]
 gi|81247691|gb|ABB68399.1| heat shock protein hslVU, ATPase subunit [Shigella boydii Sb227]
 gi|85676129|dbj|BAE77379.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K12 substr. W3110]
 gi|110617340|gb|ABF06007.1| ATP-dependent protease ATP-binding subunit [Shigella flexneri 5
           str. 8401]
 gi|157069086|gb|ABV08341.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli HS]
 gi|169756986|gb|ACA79685.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           ATCC 8739]
 gi|169891236|gb|ACB04943.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187769191|gb|EDU33035.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016819|gb|EDU54941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489297|gb|EDU64400.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           53638]
 gi|189001486|gb|EDU70472.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357218|gb|EDU75637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362747|gb|EDU81166.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367913|gb|EDU86329.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373351|gb|EDU91767.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC869]
 gi|189378023|gb|EDU96439.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC508]
 gi|192958621|gb|EDV89059.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           E110019]
 gi|194418531|gb|EDX34619.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1012]
 gi|194422786|gb|EDX38782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           101-1]
 gi|208728816|gb|EDZ78417.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734424|gb|EDZ83111.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739564|gb|EDZ87246.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4042]
 gi|209752248|gb|ACI74431.1| heat shock protein HslV [Escherichia coli]
 gi|209752250|gb|ACI74432.1| heat shock protein HslV [Escherichia coli]
 gi|209752252|gb|ACI74433.1| heat shock protein HslV [Escherichia coli]
 gi|209752254|gb|ACI74434.1| heat shock protein HslV [Escherichia coli]
 gi|209752256|gb|ACI74435.1| heat shock protein HslV [Escherichia coli]
 gi|217321708|gb|EEC30132.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. TW14588]
 gi|226838628|gb|EEH70657.1| heat shock protein hslU [Escherichia sp. 1_1_43]
 gi|238861792|gb|ACR63790.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli BW2952]
 gi|242379467|emb|CAQ34282.1| ATPase component of the HslVU protease, subunit of HslU hexamer and
           HslVU protease [Escherichia coli BL21(DE3)]
 gi|253326474|gb|ACT31076.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975782|gb|ACT41453.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str.
           REL606]
 gi|253979939|gb|ACT45609.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           BL21(DE3)]
 gi|254595333|gb|ACT74694.1| molecular chaperone and ATPase component of HslUV protease
           [Escherichia coli O157:H7 str. TW14359]
 gi|257756317|dbj|BAI27819.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O26:H11 str. 11368]
 gi|257767006|dbj|BAI38501.1| molecular chaperone and ATPase component HslU of HslUV protease
           [Escherichia coli O111:H- str. 11128]
 gi|260451232|gb|ACX41654.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           DH1]
 gi|281603325|gb|ADA76309.1| ATP-dependent hsl protease ATP-binding subunit hslU [Shigella
           flexneri 2002017]
 gi|290765219|gb|ADD59180.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia
           coli O55:H7 str. CB9615]
 gi|291430956|gb|EFF03952.1| heat shock protein HslVU [Escherichia coli B185]
 gi|299880564|gb|EFI88775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           196-1]
 gi|300401940|gb|EFJ85478.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           84-1]
 gi|300413763|gb|EFJ97073.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           115-1]
 gi|300452190|gb|EFK15810.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           116-1]
 gi|300460591|gb|EFK24084.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           187-1]
 gi|300841363|gb|EFK69123.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           124-1]
 gi|309704356|emb|CBJ03705.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Escherichia coli ETEC H10407]
 gi|310334158|gb|EFQ00363.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1827-70]
 gi|313648818|gb|EFS13257.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 2a
           str. 2457T]
 gi|315138497|dbj|BAJ45656.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli DH1]
 gi|315254304|gb|EFU34272.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           85-1]
 gi|315617726|gb|EFU98331.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           3431]
 gi|320175373|gb|EFW50476.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           dysenteriae CDC 74-1112]
 gi|320180702|gb|EFW55628.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           boydii ATCC 9905]
 gi|320184937|gb|EFW59721.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella
           flexneri CDC 796-83]
 gi|320190969|gb|EFW65619.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. EC1212]
 gi|320639183|gb|EFX08814.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. G5101]
 gi|320644571|gb|EFX13628.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H- str. 493-89]
 gi|320649894|gb|EFX18406.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H- str. H 2687]
 gi|320655295|gb|EFX23241.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660922|gb|EFX28368.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665987|gb|EFX33010.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153992|gb|EFZ40201.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           EPECa14]
 gi|323167400|gb|EFZ53108.1| heat shock protein HslVU, ATPase subunit HslU [Shigella sonnei 53G]
 gi|323174331|gb|EFZ59957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           LT-68]
 gi|323177952|gb|EFZ63536.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           1180]
 gi|323934421|gb|EGB30834.1| heat shock protein HslVU [Escherichia coli E1520]
 gi|323939013|gb|EGB35231.1| heat shock protein HslVU [Escherichia coli E482]
 gi|323959300|gb|EGB54961.1| heat shock protein HslVU [Escherichia coli H489]
 gi|323969683|gb|EGB64967.1| heat shock protein HslVU [Escherichia coli TA007]
 gi|326338056|gb|EGD61886.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. 1044]
 gi|326342649|gb|EGD66422.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia
           coli O157:H7 str. 1125]
 gi|331036131|gb|EGI08367.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           H736]
 gi|331046730|gb|EGI18815.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli
           M718]
 gi|332084172|gb|EGI89377.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii
           5216-82]
 gi|332085149|gb|EGI90327.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           155-74]
 gi|332088251|gb|EGI93371.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii
           3594-74]
 gi|332105169|gb|EGJ08515.1| heat shock protein HslVU [Shigella sp. D9]
 gi|332345927|gb|AEE59261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           UMNK88]
 gi|332751579|gb|EGJ81978.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           4343-70]
 gi|332751852|gb|EGJ82249.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-671]
 gi|332752607|gb|EGJ82993.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           2747-71]
 gi|332764529|gb|EGJ94761.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           2930-71]
 gi|332997992|gb|EGK17598.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           VA-6]
 gi|332998605|gb|EGK18202.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-218]
 gi|333013855|gb|EGK33217.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-304]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|23014725|ref|ZP_00054527.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 442

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/437 (60%), Positives = 342/437 (78%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183
            INAEER+LDALVG+TA + TR+ FRK LR+G +  KE++I+VADT  + + +FDIPG  
Sbjct: 126 EINAEERLLDALVGETAAAETRQKFRKMLREGALDSKEVEIQVADTGGAGLPSFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NLS++  K +G GR K  ++ V +    L  +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLSDMLGKALGGGRTKPRKLPVPEALAALTAEESDKLLDQDKVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVF+DE DKI AR S +  G  VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS
Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV LK+L++ D   ILT+ E++L+ QY+ L+ TE +ILD
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVILD 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           F   S++A+AD+A  +NSTV +IGARRLQTVMER+LEDISF+A D      V I AE VR
Sbjct: 366 FEPGSVEAIADLAAEINSTVENIGARRLQTVMERLLEDISFTAPDQPPGTKVTITAEMVR 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G      D+  FIL
Sbjct: 426 DRVGALAKTADLAKFIL 442


>gi|268593396|ref|ZP_06127617.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri
           DSM 1131]
 gi|291311093|gb|EFE51546.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri
           DSM 1131]
          Length = 444

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/444 (50%), Positives = 305/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQNKAKRSVAIALRNRWRRMQLNEVLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEVA +  
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQSEPTDEHSPARQAFRKKLREGQLDDKEIEIEVAASPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKPRKMKIKEAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + T
Sbjct: 241 EQAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM
Sbjct: 301 DHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPNASLTEQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF ASD   +T+ 
Sbjct: 361 ATEGVNIEFTTDGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASDRNGQTIQ 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YVR H+ +  ++ D+  FIL
Sbjct: 421 IDADYVRQHLDELVADEDLSRFIL 444


>gi|296105371|ref|YP_003615517.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059830|gb|ADF64568.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF ++ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ I
Sbjct: 361 TEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQTITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVGKHLDALVADEDLSRFIL 443


>gi|83313636|ref|YP_423900.1| ATP-dependent protease ATP-binding subunit HslU [Magnetospirillum
           magneticum AMB-1]
 gi|82948477|dbj|BAE53341.1| ATP-dependent protease HslVU [Magnetospirillum magneticum AMB-1]
          Length = 442

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 258/437 (59%), Positives = 339/437 (77%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL   LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183
            I AEER+LDALVG+TA + TR+ FRK LR+G +  KE++I+VA+T  + +  FDIPG  
Sbjct: 126 EIAAEERLLDALVGETAGTETRQKFRKMLREGALDAKEVEIQVAETGGAGLPTFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NL ++  K +G GR +  ++ V +    L  +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLGDMLGKALGGGRTRPRKLPVPEALDVLTAEESDKLLDQDKVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVF+DE DKI AR S +  G  VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS
Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV LK+L++ D   ILT+ E++L+ QY+ L+ TE + L 
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVTLT 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           F   S+DA+AD+A  +N+TV +IGARRLQTVMER+LE+ISF+A D     TV I AE VR
Sbjct: 366 FEPGSVDAIADLAAEINATVENIGARRLQTVMERLLEEISFTAPDQPPGTTVTITAEMVR 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G+     D+  FIL
Sbjct: 426 ERVGELAKTADLAKFIL 442


>gi|84684626|ref|ZP_01012527.1| ATP-dependent protease ATP-binding subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667605|gb|EAQ14074.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 435

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 247/435 (56%), Positives = 332/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREWMREDVKS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A  NAEER++ A+ G  A   TRE+FRKKLR GE+ D  I+++V DT   +  FD+PG 
Sbjct: 122 AAEHNAEERVISAVAGDQAREQTREMFRKKLRSGELDDTVIELDVQDTGGGMPMFDVPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NLS++F K    GR  + +M+V + Y  LM +E+D+L+D + V++ +++ VE
Sbjct: 182 PGMNMGMMNLSDMFGKAF-GGRTVRKKMTVAESYEILMGEEADKLLDDEAVNKIALESVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIASG
Sbjct: 241 QNGIVFIDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHMLFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVKVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N+TV +IGARRL TVMERV E++SF+A D   + VV+D  +V+ +
Sbjct: 361 TEDGIAALARIAAEVNTTVENIGARRLYTVMERVFEELSFTAPDKSGEEVVVDEAFVQKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELMQSTDVGRYML 435


>gi|242241192|ref|YP_002989373.1| heat shock protein HslVU, ATPase HslU [Dickeya dadantii Ech703]
 gi|242133249|gb|ACS87551.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii
           Ech703]
          Length = 443

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLEEDLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+   ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADAAIKMVRQLAVEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD LV                S  R+ FRKKLR+G++ DKEI+IE+A    
Sbjct: 123 AEELAEERILDVLVPPAKNNWGQTEESNEPSPARQAFRKKLREGQLDDKEIEIELAAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ ++  + +L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKSRKIKIKDAFKQLVEEEAGKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  + L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSAALTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++F +D I  +A+ A  +N    +IGARRL TV+ER++EDIS++AS++  +TV I
Sbjct: 361 TEGVNIEFAQDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDISYNASEMGGQTVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YVR H+ +  ++ D+  FIL
Sbjct: 421 DADYVRSHLDELVADEDLSRFIL 443


>gi|146313674|ref|YP_001178748.1| ATP-dependent protease ATP-binding subunit HslU [Enterobacter sp.
           638]
 gi|167017227|sp|A4WG67|HSLU_ENT38 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145320550|gb|ABP62697.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter sp.
           638]
          Length = 443

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAMKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQNEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   NG  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESNGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTDDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVTIEFTADGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYEASDLNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|300954660|ref|ZP_07167101.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           175-1]
 gi|300318371|gb|EFJ68155.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           175-1]
          Length = 443

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLPDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|295095088|emb|CBK84178.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 443

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ DAKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDDAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+GE+ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQQPEPSAARQAFRKKLREGELDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF ++ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVNIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVGKHLDALVADEDLSRFIL 443


>gi|149912218|ref|ZP_01900797.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36]
 gi|149804698|gb|EDM64749.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36]
          Length = 443

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/442 (51%), Positives = 310/442 (70%), Gaps = 11/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELD +IIGQQ+AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVSELDHHIIGQQNAKRAVAIALRNRWRRMQLDQELRQEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVG+ V+QII+DL DVA+ + RE    +   +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEIGYVGKEVDQIIKDLTDVAVKLTREQEMKKYHVR 122

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A  NAE+R+LDAL+             +  NTR++FRKKLR+G++ DKEI IE+A     
Sbjct: 123 AEENAEDRVLDALLPNPRNNWGEEEKASNDNTRQIFRKKLREGKLDDKEISIEIAAPQMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G    K  +M V++   +L+ DE+ +L++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQNLSGGSTTKSRKMKVKEALKQLVEDEAAKLVNPEELKE 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   N  GVSREGVQRDLLPL+EG +V+TK+G + TDH
Sbjct: 242 KAIFAVENNGIVFLDEIDKICKRSDSNDGGVSREGVQRDLLPLIEGCTVTTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF VS+P+DL+PE+QGR P+RV L +L  +DF  ILT+  ++L  QY  ++KT
Sbjct: 302 ILFIASGAFQVSKPSDLIPELQGRLPIRVELDALTAADFVRILTEPNASLTEQYTAMLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D ID +A+ A N+N    +IGARRL TVMER++E+ISF AS+   +++V+D
Sbjct: 362 EGVNVEFTPDGIDGIANAAWNVNEKTENIGARRLHTVMERLMEEISFDASEKNGQSLVVD 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  ++ +   + D+  +IL
Sbjct: 422 GDYVGKYLNELVEDEDLSRYIL 443


>gi|283834705|ref|ZP_06354446.1| hypothetical protein CIT292_08923 [Citrobacter youngae ATCC 29220]
 gi|291069631|gb|EFE07740.1| ATP-dependent protease HslVU, ATPase subunit [Citrobacter youngae
           ATCC 29220]
          Length = 443

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTGDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  + + I
Sbjct: 361 TEGVNIDFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|259417743|ref|ZP_05741662.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp.
           TrichCH4B]
 gi|259346649|gb|EEW58463.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp.
           TrichCH4B]
          Length = 436

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/436 (54%), Positives = 333/436 (76%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   R+  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTRDHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AE+R+L+A+ G  A  +T E+FRKKL+ GE+ D  I++++ADTS+ +        
Sbjct: 122 KAHQAAEDRVLEAIAGSDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G++NL +LF K M  GR  + +++V + Y  L+ +E+D+L+D +TV++ +++ V
Sbjct: 182 QPGANMGMMNLGDLFGKAM-GGRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L  QY+ L+ TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVT 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT++ I ALA +A  +N T+ +IGARRL TVMERV E+ISF+A D   + V +D  +V  
Sbjct: 361 FTKEGIHALAQIAAEVNHTIENIGARRLYTVMERVFEEISFAAPDRSGEEVTVDEAFVNK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+    TD+  ++L
Sbjct: 421 NLGELTKSTDLSRYVL 436


>gi|220925310|ref|YP_002500612.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           nodulans ORS 2060]
 gi|254802311|sp|B8IMW6|HSLU_METNO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219949917|gb|ACL60309.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           nodulans ORS 2060]
          Length = 437

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 259/436 (59%), Positives = 338/436 (77%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLQGPLREEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R  V+ 
Sbjct: 62  GKTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG 183
           +A   AE RILDALVG TA+  TR+ FR++LR GE+ DKE+++E+A + ++ +  F+IPG
Sbjct: 122 KAEAAAEARILDALVGPTASQATRDSFRRRLRAGELDDKEVELELAGSATAGLPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G +NL ++  K +G  R +  R++V+  +  LM +ESD+L+D DT+ +++I+ V
Sbjct: 182 MPGAAMGAINLGDMLGKALGGQRGRPRRITVRDAHAPLMTEESDKLLDQDTIIQEAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIAS
Sbjct: 242 EDNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKYGPVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L  L   DFR ILT+TE++L+ Q   LM TEG+ + 
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVTVT 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D++DALA VAV++NS+V +IGARRLQTV+ERVL++ISF+A D   + V IDA YVR 
Sbjct: 362 FTDDAVDALARVAVDVNSSVENIGARRLQTVLERVLDEISFAAPDRSGEIVTIDAAYVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            +       D+  FIL
Sbjct: 422 RVESLAQNADLSRFIL 437


>gi|300721288|ref|YP_003710559.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297627776|emb|CBJ88307.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus nematophila ATCC 19061]
          Length = 443

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDENLRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S+TR+ FRKKLR+G++ DKEI+IEV+    
Sbjct: 123 AEELAEERILDVLLPPAKNNWGQTETQSEPSSTRQAFRKKLREGQLDDKEIEIEVSAAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   M   R+K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-MAGQRQKSRKLKIKDAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D I  +A+ A  +N T  +IGARRL TV+ER++EDISF AS+ Q + V I
Sbjct: 361 TEGMNIEFTADGIRKIAEAAWQVNETTENIGARRLHTVLERMMEDISFDASERQGQFVEI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +++YV+ ++ +  +  D+  FIL
Sbjct: 421 NSDYVKENLDELVANEDLSRFIL 443


>gi|308051235|ref|YP_003914801.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica
           DSM 9799]
 gi|307633425|gb|ADN77727.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica
           DSM 9799]
          Length = 442

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/442 (51%), Positives = 300/442 (67%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQSGAKKAVAIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE      + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREQEMARNKFR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEER+LDAL+                 TR+VFRKKLR+G++ DKEI+++V+     
Sbjct: 123 AEEAAEERVLDALLPNPKDQWGNEQKADNTATRQVFRKKLREGQLDDKEIEVDVSQAQMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +G  +K + +M V+  +  L+ +E+ +L+  + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQSMFQN-LGGQQKDRRKMKVKDAFKLLVEEEAAKLVKPEELKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 KAIEAVEQHGIVFLDEIDKICKRGEVSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L SL   DF  ILT+  ++L  QYK LM T
Sbjct: 301 ILFIASGAFQLSKPSDLIPELQGRLPIRVELDSLTAEDFVRILTEPHASLTEQYKALMGT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FTED I  +A+ A  +N    +IGARRL TVMER++E+ISF ASD   +++ +D
Sbjct: 361 EGVDVSFTEDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEEISFDASDKSGQSLTVD 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+     + D+  FIL
Sbjct: 421 AAYVNAHLDTLVEDEDLARFIL 442


>gi|308188608|ref|YP_003932739.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans
           C9-1]
 gi|308059118|gb|ADO11290.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans
           C9-1]
          Length = 445

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/445 (50%), Positives = 312/445 (70%), Gaps = 15/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A ++ 
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASAP 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +D+I  VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + 
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF+ ILT+  +++ +QYK L
Sbjct: 301 TDHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ ++FTE+ I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++V
Sbjct: 361 MNTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESV 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA+YV  H+ +  ++ D+  FIL
Sbjct: 421 TIDADYVGKHLDELVADEDLSRFIL 445


>gi|209395997|ref|YP_002273451.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4115]
 gi|238065794|sp|B5YZ71|HSLU_ECO5E RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|209157397|gb|ACI34830.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli
           O157:H7 str. EC4115]
          Length = 443

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQNNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|304398972|ref|ZP_07380841.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB]
 gi|304353432|gb|EFM17810.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB]
          Length = 445

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/445 (50%), Positives = 312/445 (70%), Gaps = 15/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A +S 
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASSP 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +D+I+ VE +GIVF+DE DKI  R   N  G  VSREGVQRDLLPLVEG +VSTK+G + 
Sbjct: 241 QDAIEAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF+ ILT+  +++ +QYK L
Sbjct: 301 TDHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ ++FTE+ I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   ++ 
Sbjct: 361 MNTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESF 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA+YV  H+ +  ++ D+  FIL
Sbjct: 421 TIDADYVAKHLDELVADEDLSRFIL 445


>gi|293393523|ref|ZP_06637833.1| heat shock protein HslVU [Serratia odorifera DSM 4582]
 gi|291423858|gb|EFE97077.1| heat shock protein HslVU [Serratia odorifera DSM 4582]
          Length = 443

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDGYIIGQSKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    +  R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIERNRTR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L+  DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALSTEDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT D I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS+   +++ I
Sbjct: 361 TEGVTIDFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESSGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+ +  ++ D+  FIL
Sbjct: 421 DAQYVGNHLDELVADEDLSRFIL 443


>gi|163732950|ref|ZP_02140394.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
 gi|161393485|gb|EDQ17810.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
          Length = 435

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/435 (57%), Positives = 333/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+  RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDLMRDDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A + AEER++ A+ G+ A  NTRE+FRKKL+ G++ D  I+++VADTS+     DIPG 
Sbjct: 122 NAHLAAEERVISAIAGEDARENTREMFRKKLKSGDLDDTIIELDVADTSNPFPTMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G++NL ++F K +  GR  + +++V + Y  L+ +E+D+L+D +TV+R +I  VE
Sbjct: 182 PGGNMGMMNLGDIFGKAL-GGRTTRKKLTVSQSYDVLIGEEADKLLDDETVNRAAIDSVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEKVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SFSA +     +V+DA +V  +
Sbjct: 361 TEDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPERAGDEIVVDAAFVDEN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G     TD+  ++L
Sbjct: 421 LGALAKSTDVSRYVL 435


>gi|329298186|ref|ZP_08255522.1| ATP-dependent protease ATP-binding subunit HslU [Plautia stali
           symbiont]
          Length = 444

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/444 (50%), Positives = 307/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRFIIGQDGAKKAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEDRILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAAVPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +D+I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASD   +++ 
Sbjct: 361 GTEGVNVEFTEDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+ +  +  D+  FIL
Sbjct: 421 IDAEYVGQHLDELVANEDLSRFIL 444


>gi|254504755|ref|ZP_05116906.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii
           DFL-11]
 gi|222440826|gb|EEE47505.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii
           DFL-11]
          Length = 434

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 266/435 (61%), Positives = 343/435 (78%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL   +R+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+  I++VRE +R+ V+ 
Sbjct: 62  GKTEISRRLAKLARAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREEKRESVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A + AEER+LDALVG  A+  TRE FR KLRDG++ DKEI++EV    + + +FD+PG 
Sbjct: 122 KAHVLAEERVLDALVGANASPATRESFRTKLRDGDMDDKEIEVEVP-AQAQMPSFDLPGM 180

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GASVG++N+S+L  K    G+ K  R++V+  +  L+  ESD+L+D D +  ++I +VE
Sbjct: 181 PGASVGVMNVSDLLGKAF-GGQTKTKRINVRDSHQLLVNAESDKLLDEDKIVEEAISLVE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASG
Sbjct: 240 NSGIVFLDEIDKICAREGRAGGDVSREGVQRDLLPLIEGTVVSTKHGPVRTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY  LM+TEG+ L F
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMETEGLKLSF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TEDSI+ +A VAV+LN +V +IGARRLQTVMER+L++ISF+A D   + V I AE+V  +
Sbjct: 360 TEDSIEEIASVAVDLNGSVENIGARRLQTVMERILDEISFTAPDRSGEEVEITAEFVHDN 419

Query: 423 IGDFPSETDMYHFIL 437
           IGD     D+  FIL
Sbjct: 420 IGDLAKNVDLSKFIL 434


>gi|157373670|ref|YP_001472270.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis
           HAW-EB3]
 gi|189043922|sp|A8FQL9|HSLU_SHESH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157316044|gb|ABV35142.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sediminis
           HAW-EB3]
          Length = 441

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/441 (52%), Positives = 308/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ DAKR+VAIALRNRWRR QL  D R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDTHIIGQHDAKRSVAIALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREDQMKKCKFK 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+VA     I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDNEKPDDSATRQIFRKKLREGQLDDKEIEIDVAAPQVGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ D +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGDSKRRKMPIKEAYKLMIEEEAAKLVNQDDMKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  Q+  +M TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALTADDFKRILTEPHASLTEQHVAMMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + ++FTED I+++A  A  +N    +IGARRL TVMER++ED+S+ ASD    T VIDA
Sbjct: 361 DVKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMERLMEDLSYDASDKSGNTFVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV  H+ D   + D+  FIL
Sbjct: 421 EYVSSHLDDLVQDEDLSRFIL 441


>gi|187930771|ref|YP_001901258.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia
           pickettii 12J]
 gi|309780233|ref|ZP_07674984.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp.
           5_7_47FAA]
 gi|238691781|sp|B2U7X3|HSLU_RALPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|187727661|gb|ACD28826.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii
           12J]
 gi|308920936|gb|EFP66582.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 443

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 311/445 (69%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+RILD L            +   S  R+ FRKKLR+G++ DKEI++EV+  
Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEVSAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG        +  +F+  +G G+K + +M V + +  L+ +E+ +L++ D 
Sbjct: 181 APSMDIMGPPGM-EDMTEQIRSMFAG-LGQGKKNRRKMKVSEAFKLLIDEEAAKLVNEDE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + ++  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG I 
Sbjct: 239 LKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFRAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTEG+ L F ED I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +TV
Sbjct: 359 LKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   + +     D+  ++L
Sbjct: 419 TIDAAYVDERLSELSGNEDLSRYVL 443


>gi|301645122|ref|ZP_07245080.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           146-1]
 gi|301076549|gb|EFK91355.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS
           146-1]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/443 (49%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A   N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQGNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|188532279|ref|YP_001906076.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia
           tasmaniensis Et1/99]
 gi|238689696|sp|B2VES3|HSLU_ERWT9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188027321|emb|CAO95164.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           tasmaniensis Et1/99]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D  R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIDRNRNRA 123

Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILD L+                S+ R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERILDVLIPPAKNNWGQNETPAEPSSARQSFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  ++K  ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNI-GGQKQKPRKLKIKEAMKLLVEEEAAKLVNQEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I  VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D I  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVNITFTPDGISKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|157147271|ref|YP_001454590.1| ATP-dependent protease ATP-binding subunit HslU [Citrobacter koseri
           ATCC BAA-895]
 gi|166221475|sp|A8AKZ1|HSLU_CITK8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157084476|gb|ABV14154.1| hypothetical protein CKO_03063 [Citrobacter koseri ATCC BAA-895]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEEMAEERILDALIPPAKNNWGQAEQQQEPSAARQAFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELKALTTEDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVDIEFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|163738007|ref|ZP_02145423.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter
           gallaeciensis BS107]
 gi|161388623|gb|EDQ12976.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter
           gallaeciensis BS107]
          Length = 436

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 244/436 (55%), Positives = 330/436 (75%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI   RE  RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AEER++DA+ G  A   TR++FRKKL+ GE+ D  I+++V+DTS+ +        
Sbjct: 122 KARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++G++NL +LF K M  GR  + +M+V   Y  L+ +E+D+L+D +TV + +++ V
Sbjct: 182 QPGGNMGMMNLGDLFGKAM-GGRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVNVS 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   +TV +DA +VR 
Sbjct: 361 FTDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+     D+  ++L
Sbjct: 421 NLGELTKSADVSRYVL 436


>gi|187730898|ref|YP_001882626.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii
           CDC 3083-94]
 gi|238691703|sp|B2TWC7|HSLU_SHIB3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|187427890|gb|ACD07164.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii CDC
           3083-94]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/443 (49%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV   +    ++ D+  FIL
Sbjct: 421 DADYVSKRLDALVADEDLSRFIL 443


>gi|163742597|ref|ZP_02149983.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161384182|gb|EDQ08565.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 436

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 244/436 (55%), Positives = 330/436 (75%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI   RE  RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AEER++DA+ G  A   TR++FRKKL+ GE+ D  I+++V+DTS+ +        
Sbjct: 122 KARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++G++NL +LF K M  GR  + +M+V   Y  L+ +E+D+L+D +TV + +++ V
Sbjct: 182 QPGGNMGMMNLGDLFGKAM-GGRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVTVS 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   +TV +DA +VR 
Sbjct: 361 FTDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+     D+  ++L
Sbjct: 421 NLGELTKSADVSRYVL 436


>gi|167551412|ref|ZP_02345167.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323718|gb|EDZ11557.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLASAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|188579892|ref|YP_001923337.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           populi BJ001]
 gi|238692900|sp|B1ZL59|HSLU_METPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|179343390|gb|ACB78802.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           populi BJ001]
          Length = 437

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 269/436 (61%), Positives = 343/436 (78%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ 
Sbjct: 62  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
           +A   AE RILDALVG TA+  TRE FRKKLR+ E+ DKE++IE+A +    +  F+IPG
Sbjct: 122 KAEAAAESRILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G +N+S++  K +G  R K  R++V   Y  L+ +ESD+L+D D + R++I+ V
Sbjct: 182 MPGASMGAINISDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIAS
Sbjct: 242 EDNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LD
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR 
Sbjct: 362 FTEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAGYVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D  + TD+  FIL
Sbjct: 422 RVADLAANTDLSRFIL 437


>gi|241664961|ref|YP_002983321.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia
           pickettii 12D]
 gi|240866988|gb|ACS64649.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii
           12D]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 310/445 (69%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+RILD L            +   S  R+ FRKKLR+G++ DKEI++EV+  
Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEVSAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG        +  +F+  +G G+K + +M V + +  L+ +E+ +L++ D 
Sbjct: 181 VPSMDIMGPPGM-EDMTDQIRSMFAG-LGQGKKNRRKMKVSEAFKLLIDEEAAKLVNEDE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + ++  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG I 
Sbjct: 239 LKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVDDFRAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTEG+ L F ED I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +TV
Sbjct: 359 LKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   + +     D+  ++L
Sbjct: 419 TIDAAYVDERLNELSGNEDLSRYVL 443


>gi|261343009|ref|ZP_05970867.1| hypothetical protein ENTCAN_09612 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314761|gb|EFC53699.1| ATP-dependent protease HslVU, ATPase subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 443

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+GE+ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGELDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ I
Sbjct: 361 TEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGESITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +AEYV  H+    ++ D+  FIL
Sbjct: 421 NAEYVGKHLDALVADEDLSRFIL 443


>gi|254464268|ref|ZP_05077679.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium Y4I]
 gi|206685176|gb|EDZ45658.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium Y4I]
          Length = 435

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/435 (56%), Positives = 334/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTREYMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A   AE+R+++A+ G  A   TRE+FRKKL+ GE+ D  I+++VADTS+ +  F+IPG 
Sbjct: 122 NARKAAEDRVVEAIAGSDAREATREMFRKKLKAGELDDTVIELDVADTSNPMGMFEIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G ++G+LNL +LF K M  GR  + +++V + Y  L+ +E+D+L+D +TV R +++ VE
Sbjct: 182 PGGNMGMLNLGDLFGKAM-GGRTIRKKLTVAESYEVLIGEEADKLLDDETVTRIALESVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMGTEEVEVAF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   ++V +DA +V  +
Sbjct: 361 TEDGIAALAKIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGESVTVDAAFVTKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    +D+  ++L
Sbjct: 421 LGELGRSSDLSRYVL 435


>gi|56461557|ref|YP_156838.1| ATP-dependent protease ATP-binding subunit HslU [Idiomarina
           loihiensis L2TR]
 gi|62286741|sp|Q5QV36|HSLU_IDILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56180567|gb|AAV83289.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Idiomarina
           loihiensis L2TR]
          Length = 450

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/450 (51%), Positives = 311/450 (69%), Gaps = 20/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKRAVA+ALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+   RE    +VR +
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQTREEMMQKVRYR 122

Query: 126 ASINAEERILDALVGKTATSN------------------TREVFRKKLRDGEISDKEIDI 167
           A   AEERILD L+    TS+                  TR+VFRKKLR+G++ DKEI+I
Sbjct: 123 AEEAAEERILDVLLPPAKTSSSGWAQQQEETPENDDQRGTRQVFRKKLREGQLDDKEIEI 182

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++A     +     PG   +    L  +F   MGS + K  +M ++  Y +L+ +E+ +L
Sbjct: 183 DLAMPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGSDKTKARKMRIKDAYKQLVDEEAAKL 240

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ++ D V   +I+ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG++V+TK
Sbjct: 241 LNPDDVKEAAIESVEQNGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGTTVNTK 300

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           +G I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  
Sbjct: 301 HGMIKTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELEALTSGDFVRILTEPSASLTT 360

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L+ TEG+ + FTE+ I  +A+VA ++N T  +IGARRL TV+ER++E+ISF A+D 
Sbjct: 361 QYHALLNTEGVEVSFTEEGIQRIAEVAFHVNETTENIGARRLHTVLERLMEEISFHATDH 420

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + +VIDA+YV  H+G+   + D+  FIL
Sbjct: 421 SGEKLVIDADYVNEHVGELSQDEDLSRFIL 450


>gi|84501208|ref|ZP_00999413.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
 gi|84390499|gb|EAQ02987.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
          Length = 435

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/435 (56%), Positives = 334/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRSRWRRRQLEDDLRDEVFPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL+D AI + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLMDSAIAMTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A   AE+R+++AL G  A   TRE+FRKKLR+GE+ D EI++++AD S+ ++  D+PG 
Sbjct: 122 TAHKMAEDRVIEALAGSDAREGTREMFRKKLRNGELDDTEIELDLADNSNPMAMLDMPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  +G++NL ++F K    G+  + +M V   Y  L+ +E+D+L+D +TV+R ++  VE
Sbjct: 182 PGQQMGMMNLGDIFGKAF-GGKTVRRKMRVADSYEVLLGEEADKLLDDETVNRAALTAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASG
Sbjct: 241 ENGIVFLDEIDKVCARSDARGAEVSREGVQRDLLPLIEGTTVSTKYGAVRTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L+SL ++DF  ILT+T++ L  QY  LM+TEG+ + F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELQSLTEADFVAILTETDNALTRQYTALMETEGVSVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I ALA  A ++N +V +IGARRL T+MERV E++SF A D   +T+ +DA++V  +
Sbjct: 361 TEDGIAALAKTAADVNQSVENIGARRLYTIMERVFEELSFHAPDRTGETISVDADFVNEN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G   +  D+  ++L
Sbjct: 421 VGKLAASADLSRYVL 435


>gi|304320679|ref|YP_003854322.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299581|gb|ADM09180.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 435

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/434 (56%), Positives = 326/434 (75%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +++PREIVSELDR+I+GQ +AKRAVA+ALRNRWRRQQLP  LRDE+ PKNIL++GPTGVG
Sbjct: 3   SYTPREIVSELDRFIVGQTEAKRAVAVALRNRWRRQQLPDHLRDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+L GAPF+KVE TKFTE+GYVGR+V+QIIRDL +V++ ++RE RR++V+ +
Sbjct: 63  KTEISRRLAKLVGAPFLKVEATKFTEVGYVGRDVDQIIRDLTEVSMQLIRERRREQVKSR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AEER+L ALVG+ A+  TR  FRKKL  GE+ D EI+I++ D+      FDIPG  
Sbjct: 123 AHDAAEERVLSALVGENASEATRASFRKKLHAGELDDAEIEIDLQDSGKGAPMFDIPGMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G++NLS++  K +  G+ K  +M V+  Y  L+ +ESD+L+D D V ++++  VEN
Sbjct: 183 GAQMGMINLSDIMGKAL-GGQTKTRKMKVKDVYEPLIAEESDKLLDDDQVAQEALAAVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+       G  VSREGVQRDLLPL+EGS VSTKYG + TDHILFIASGA
Sbjct: 242 DGIVFLDEIDKVAKSSDRGGADVSREGVQRDLLPLIEGSVVSTKYGPVKTDHILFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L +L   DF  ILTDTE++L  QY  L++TEG+ + FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELSALTVDDFVSILTDTEASLPKQYTALLETEGLTVTFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D I  LA+ A  +N+ V +IGARRL T++ERVLE++SF A++   +TV IDA +V   +
Sbjct: 362 DDGIVRLAEKAAEVNANVENIGARRLSTILERVLEEVSFDAAERAGETVTIDAAFVDTRL 421

Query: 424 GDFPSETDMYHFIL 437
                  D+  +IL
Sbjct: 422 EGLAGNADLSKYIL 435


>gi|156935935|ref|YP_001439851.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter
           sakazakii ATCC BAA-894]
 gi|166221479|sp|A7ML81|HSLU_ENTS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|156534189|gb|ABU79015.1| hypothetical protein ESA_03829 [Cronobacter sakazakii ATCC BAA-894]
          Length = 443

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+GE+ DKEI+I +A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE +GIVF+DE DKI  R + +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM+
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASVTVQYKALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ I
Sbjct: 361 TEGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|83594929|ref|YP_428681.1| ATP-dependent protease ATP-binding subunit HslU [Rhodospirillum
           rubrum ATCC 11170]
 gi|123766890|sp|Q2RNA1|HSLU_RHORT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83577843|gb|ABC24394.1| Heat shock protein HslU [Rhodospirillum rubrum ATCC 11170]
          Length = 435

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 247/433 (57%), Positives = 334/433 (77%), Gaps = 3/433 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE++PKNIL++GPTGVGK
Sbjct: 4   FTPREIVSELDRHIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV+ A+   R+  R +V  +A
Sbjct: 64  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIIRDLVETALTQERDRLRKQVNAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184
             NAEER+LDALVG  A+  TR+ FRK LR+G+I+DKEI+++V D+   +   DIPG  G
Sbjct: 124 EANAEERVLDALVGDRASPETRQKFRKMLREGQINDKEIEVQVQDSGGALPTMDIPGMPG 183

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A +G+LNL+++F K     R K  +M+V+  +  L+R+E+D+L+D + V + +I  VEN 
Sbjct: 184 AQMGMLNLNDIFGKAF-GNRTKARKMTVEDSHAVLVREEADKLLDEEQVVKAAIAAVENN 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI       G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF
Sbjct: 243 GIVFLDEIDKIATASERRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H ++PADLLPE+QGR P+RV L +LN  DF+ IL + E++LI QYK L+ TEG+ L+F +
Sbjct: 303 HTAKPADLLPELQGRLPIRVELSALNAGDFKRILLEPEASLITQYKALLATEGVTLEFPD 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+++A+A++A  +N +V +IGARRL TV+ER+LE+ISF+A+D   +T+V+  + V+  +G
Sbjct: 363 DTVEAIAEIATEINGSVENIGARRLHTVLERLLEEISFTATDRSGETIVVTRDMVKERVG 422

Query: 425 DFPSETDMYHFIL 437
              ++ D+  FIL
Sbjct: 423 ALAAKADLSRFIL 435


>gi|16767357|ref|NP_462972.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56415935|ref|YP_153010.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62182550|ref|YP_218967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161617227|ref|YP_001591192.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991667|ref|ZP_02572766.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233036|ref|ZP_02658094.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237718|ref|ZP_02662776.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168244150|ref|ZP_02669082.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263003|ref|ZP_02684976.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168467437|ref|ZP_02701274.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821555|ref|ZP_02833555.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444107|ref|YP_002043354.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194449297|ref|YP_002048094.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194470697|ref|ZP_03076681.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194733928|ref|YP_002117012.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197248426|ref|YP_002149019.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197264234|ref|ZP_03164308.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197364862|ref|YP_002144499.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198242037|ref|YP_002218017.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388213|ref|ZP_03214825.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930203|ref|ZP_03221180.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205354333|ref|YP_002228134.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859278|ref|YP_002245929.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224585902|ref|YP_002639701.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238912237|ref|ZP_04656074.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|17865713|sp|O30911|HSLU_SALTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|62286734|sp|Q5PIR9|HSLU_SALPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|81309527|sp|Q57HC6|HSLU_SALCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|189043918|sp|A9MZI1|HSLU_SALPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690015|sp|B5F0S2|HSLU_SALA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690346|sp|B5FPU0|HSLU_SALDC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690415|sp|B5QXM0|HSLU_SALEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690527|sp|B5RF80|HSLU_SALG2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690605|sp|B4TCM8|HSLU_SALHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690712|sp|B4TPV2|HSLU_SALSV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238690772|sp|B5BJK8|HSLU_SALPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|238693575|sp|B4T0T8|HSLU_SALNS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|254802316|sp|C0Q441|HSLU_SALPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|9650897|emb|CAC00720.1| heat shock protein [Salmonella typhimurium]
 gi|16422658|gb|AAL22931.1| ATPase component of the HslUV protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130192|gb|AAV79698.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130183|gb|AAX67886.1| ATPase component of the HslUV protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366591|gb|ABX70359.1| hypothetical protein SPAB_05068 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402770|gb|ACF62992.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407601|gb|ACF67820.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457061|gb|EDX45900.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709430|gb|ACF88651.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630235|gb|EDX48875.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197096339|emb|CAR61943.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212129|gb|ACH49526.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197242489|gb|EDY25109.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289363|gb|EDY28728.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197936553|gb|ACH73886.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605311|gb|EDZ03856.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320607|gb|EDZ05809.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205274114|emb|CAR39123.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205330063|gb|EDZ16827.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332829|gb|EDZ19593.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336943|gb|EDZ23707.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341830|gb|EDZ28594.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348092|gb|EDZ34723.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711081|emb|CAR35455.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470430|gb|ACN48260.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261249207|emb|CBG27069.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996391|gb|ACY91276.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160598|emb|CBW20129.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915207|dbj|BAJ39181.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320088502|emb|CBY98261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225383|gb|EFX50441.1| ATP-dependent hsl protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613146|gb|EFY10090.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619226|gb|EFY16109.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322626093|gb|EFY22905.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626447|gb|EFY23253.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322632439|gb|EFY29187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635079|gb|EFY31800.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642719|gb|EFY39309.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646455|gb|EFY42966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650757|gb|EFY47158.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322652941|gb|EFY49278.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657255|gb|EFY53535.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662257|gb|EFY58472.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666790|gb|EFY62966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672062|gb|EFY68177.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675783|gb|EFY71855.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681800|gb|EFY77826.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684004|gb|EFY80013.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322717048|gb|EFZ08619.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132437|gb|ADX19867.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193276|gb|EFZ78491.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197633|gb|EFZ82766.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323200792|gb|EFZ85863.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207202|gb|EFZ92154.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211405|gb|EFZ96246.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218550|gb|EGA03258.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323220968|gb|EGA05400.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225945|gb|EGA10164.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323231624|gb|EGA15736.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236128|gb|EGA20206.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239451|gb|EGA23500.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243956|gb|EGA27967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249318|gb|EGA33235.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250439|gb|EGA34322.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258893|gb|EGA42545.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260137|gb|EGA43760.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265256|gb|EGA48753.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270478|gb|EGA53924.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326625809|gb|EGE32154.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629458|gb|EGE35801.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990920|gb|AEF09903.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 443

 Score =  507 bits (1307), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|311281625|ref|YP_003943856.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           SCF1]
 gi|308750820|gb|ADO50572.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae
           SCF1]
          Length = 444

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 305/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQAQEPSAARQAFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +D+I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QDAIEAVEQHGIVFIDEIDKICKRGGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTQDFERILTEPNASVTVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ + FTE  I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +++ 
Sbjct: 361 ATEGVDISFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDALVADEDLSRFIL 444


>gi|161505410|ref|YP_001572522.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189043917|sp|A9MI34|HSLU_SALAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|160866757|gb|ABX23380.1| hypothetical protein SARI_03565 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 443

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD LV     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLVPPAKNNWGQTEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSLFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|269103958|ref|ZP_06156655.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163856|gb|EEZ42352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 443

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP  LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEALRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVRYR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+                S TR+ FRKKLR+G++ DKEI++++A    
Sbjct: 123 AEELAEDRILDVLLPPVRDAWGQNENSDTNSATRQSFRKKLREGQLDDKEIELDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK ++ ++     +  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGNTTKKRKLKIKDALKAVTEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIHAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+  ++L  QY+ LM 
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPNASLTEQYRALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTE+ IDALAD A  +N    +IGARRL TVMER++ED+S+ A++   ++  I
Sbjct: 361 TESVNIEFTEEGIDALADAAWQVNERTENIGARRLHTVMERLMEDLSYDATEKSGESFKI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
            AEYV+  +G+F  + D+  FIL
Sbjct: 421 TAEYVKERLGEFVEDEDLSRFIL 443


>gi|290477229|ref|YP_003470146.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus bovienii SS-2004]
 gi|289176579|emb|CBJ83388.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Xenorhabdus bovienii SS-2004]
          Length = 443

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 303/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEELAEERILDVLLPPAKNNWGQTETQSEPSTARQAFRKKLREGQLDDKEIEIDVASAPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKTRKMKIKDAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT D I  LA+ A  +N T  +IGARRL TV+ER++EDISF AS+ Q  +V I
Sbjct: 361 TEGMNIDFTTDGIRKLAEAAWRVNETTENIGARRLYTVLERMMEDISFDASERQGHSVEI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +A+YV+ H+ +  ++ D+  FIL
Sbjct: 421 NADYVKEHLDELVADEDLSRFIL 443


>gi|220933249|ref|YP_002512148.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254802321|sp|B8GTA1|HSLU_THISH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219994559|gb|ACL71161.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 444

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/445 (51%), Positives = 304/445 (68%), Gaps = 16/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++I+GQ+DAKRAVAIALRNRWRRQQLP  LR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVQELDKHIVGQKDAKRAVAIALRNRWRRQQLPEALRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDLVD AI ++RE    +VR +
Sbjct: 63  KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAIKLLREQEMGKVRFR 122

Query: 126 ASINAEERILDALVGKT-------------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           A   AEER+LD L+                  S TR+ FRK+LR+G++ DKEI+I+V+ T
Sbjct: 123 AEEAAEERVLDVLLPAPRQAGFMSEPASAPEQSETRQKFRKRLREGQLDDKEIEIQVSAT 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  LF  + G GR +  ++ ++     L  +E+ R+++ D 
Sbjct: 183 PVGVEIMTPPGMEEMA-SQLQSLFQNI-GGGRSQTRKLKIRDAMKLLTDEEAARMVNQDE 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   ++  VE  GIVFLDE DK+  R    G  VSREGVQRDLLPLVEG +V+TK+G + 
Sbjct: 241 LKLRAVANVEQNGIVFLDEIDKVAKRGEYGGADVSREGVQRDLLPLVEGCTVNTKFGMVR 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L   DF  ILT+ +++L  QY  L
Sbjct: 301 TDHILFIASGAFHLSKPSDLIPELQGRLPIRVELSALTAEDFVRILTEPDASLTEQYSAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ ++F ED +  +A++A  +N    +IGARRL TVMER+LE ISF A D Q   V
Sbjct: 361 LQTEGVEVNFAEDGVRRIAEIATRVNERTENIGARRLHTVMERLLEQISFEAPDHQG-PV 419

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   + +   + D+  +IL
Sbjct: 420 SIDAAYVDERLEELVQDEDLSRYIL 444


>gi|119773580|ref|YP_926320.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella
           amazonensis SB2B]
 gi|166221605|sp|A1S2P4|HSLU_SHEAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119766080|gb|ABL98650.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           amazonensis SB2B]
          Length = 441

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/441 (51%), Positives = 303/441 (68%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL A LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDAALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDTAIKLTREVEMKKCRTR 122

Query: 126 ASINAEERILDALVGKTATSNT---------REVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEER+LDAL+ +               R++FRKKLR+G++ DKEI+I++A     +
Sbjct: 123 AEEAAEERVLDALLPRPKNDWDNNSDDNSSSRQIFRKKLREGQLDDKEIEIDIAGPQIGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   MG    K+ +M +++   +L+ +E+ +L++ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSLFQN-MGQAPAKRKKMKIKEALKQLVDEEAAKLVNQEDLKEK 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L  SDF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALTASDFKRILTEPHASLTEQYVALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTE  ID +A  A  +N    +IGARRL TVMER++EDISF ASD       IDA
Sbjct: 361 GVTIEFTETGIDRIAQAAWQVNERTENIGARRLHTVMERLMEDISFEASDKSGSKFTIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 421 DYVNAHLDNLVQDEDLSRFIL 441


>gi|99082691|ref|YP_614845.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria sp.
           TM1040]
 gi|123252063|sp|Q1GCN3|HSLU_SILST RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|99038971|gb|ABF65583.1| heat shock protein HslVU ATPase subunit HslU [Ruegeria sp. TM1040]
          Length = 436

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/436 (55%), Positives = 334/436 (76%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AE+R+L+A+ G  A  +T E+FRKKL+ GE+ D  I++++ADTS+ +        
Sbjct: 122 KAHKAAEDRVLEAIAGTDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G++NL +LF K M  GR  + +++V + Y  L+ +E+D+L+D +TV++ +++ V
Sbjct: 182 QPGANMGMMNLGDLFGKAM-GGRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L  QY+ L+ TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVT 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D I ALA +A  +N TV +IGARRL TVMERV E++SF+A D   + +++D  +V  
Sbjct: 361 FTKDGIHALAQIAAEVNHTVENIGARRLYTVMERVFEEMSFAAPDRSGEEIIVDEPFVTK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+    TD+  ++L
Sbjct: 421 NLGELTKSTDLSRYVL 436


>gi|221641023|ref|YP_002527285.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides KD131]
 gi|254802315|sp|B9KRH0|HSLU_RHOSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221161804|gb|ACM02784.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter
           sphaeroides KD131]
          Length = 433

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/433 (54%), Positives = 327/433 (75%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ 
Sbjct: 62  GKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G 
Sbjct: 122 RAAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NL E+F K    GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  
Sbjct: 182 GQMGMMNLGEIFGKAF-GGRTQRRKMTVAESHDILMNEEADKLLDDEVVKAAALEAVQQN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTE
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G
Sbjct: 361 DGIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLG 420

Query: 425 DFPSETDMYHFIL 437
           +    +D+  ++L
Sbjct: 421 ELARSSDLSRYVL 433


>gi|170738607|ref|YP_001767262.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           sp. 4-46]
 gi|238688061|sp|B0UFH4|HSLU_METS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|168192881|gb|ACA14828.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium sp.
           4-46]
          Length = 437

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/436 (59%), Positives = 334/436 (76%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL   LR+E+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLHGPLREEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R  V+ 
Sbjct: 62  GKTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG 183
           +A   AE RILDALVG TA   TR+ FR++LR GE+ DKE++IE+A    S +  F+IPG
Sbjct: 122 RAEAAAEARILDALVGPTAGQATRDSFRRRLRAGELDDKEVEIELASAAPSGLPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G +NL ++  K +G  + K  R++V+  +  LM +ESD+L+D D + +++++ V
Sbjct: 182 VPGAAMGAINLGDMLGKALGGQKGKPRRVTVRDAHAPLMAEESDKLLDQDAIVQEAVREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIAS
Sbjct: 242 EDNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L  L   DFR ILT+TE++L+ Q   LM TEG+ + 
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVAVT 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED++DALA VAV +NS+V +IGARRLQTV+ERVL++ISF+A D   ++V IDA YVR 
Sbjct: 362 FTEDAVDALARVAVEVNSSVENIGARRLQTVLERVLDEISFTAPDRAGESVTIDAAYVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            +       D+  FIL
Sbjct: 422 RVESLAQNADLSRFIL 437


>gi|170728751|ref|YP_001762777.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella woodyi
           ATCC 51908]
 gi|238688681|sp|B1KK51|HSLU_SHEWM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|169814098|gb|ACA88682.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella woodyi
           ATCC 51908]
          Length = 441

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/441 (52%), Positives = 310/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ +AKR+VAIALRNRWRR QL AD R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQHNAKRSVAIALRNRWRRMQLDADFRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE +  + + +
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMKKCKFR 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR+VFRKKLR+G++ DKEI+I+V+     I
Sbjct: 123 AEEAAEERILDALLPKAKEDWDNEKPDDSATRQVFRKKLREGQLDDKEIEIDVSAPQVGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ D +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGLGASKRRKMPIKEAYKLMVEEEAAKLVNQDDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGEASGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+  ++L  Q   LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQQIALMGTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTED I+++A  A  +N    +IGARRL TVME++ E++S+ ASD    T+VIDA
Sbjct: 361 GVKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMEKLTEELSYEASDKSGSTIVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+ +   + D+  FIL
Sbjct: 421 KYVSDHLDNLVQDEDLSRFIL 441


>gi|163750991|ref|ZP_02158223.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161329281|gb|EDQ00279.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 441

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/441 (52%), Positives = 313/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQDAKRAVAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQDAKRAVAIALRNRWRRMQLDADLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE    + + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKCKVR 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+     I
Sbjct: 123 AEAAAEERILDALLPKPKEDWDSETKDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQVGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICRRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  Q+  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQHIALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I+A+A  A  +N    +IGARRL TVMER++E+IS++ASD     ++ID 
Sbjct: 361 GVKIEFTKDGIEAIARAAWQVNERTENIGARRLHTVMERLMEEISYAASDSSGTELLIDE 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+ H+ +   + D+  FIL
Sbjct: 421 KYVKDHLDELVQDEDLSRFIL 441


>gi|332559997|ref|ZP_08414319.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides WS8N]
 gi|332277709|gb|EGJ23024.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides WS8N]
          Length = 433

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/433 (54%), Positives = 327/433 (75%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ 
Sbjct: 62  GKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G 
Sbjct: 122 RAAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NL E+F K    GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  
Sbjct: 182 GQMGMMNLGEIFGKAF-GGRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQY+ LM+TE + + FTE
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYRALMQTEKVGITFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G
Sbjct: 361 DGIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLG 420

Query: 425 DFPSETDMYHFIL 437
           +    +D+  ++L
Sbjct: 421 ELARSSDLSRYVL 433


>gi|163867504|ref|YP_001608703.1| ATP-dependent protease ATP-binding subunit HslU [Bartonella
           tribocorum CIP 105476]
 gi|189043904|sp|A9IMR3|HSLU_BART1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|161017150|emb|CAK00708.1| heat shock protein [Bartonella tribocorum CIP 105476]
          Length = 436

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 266/434 (61%), Positives = 350/434 (80%), Gaps = 5/434 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVGK
Sbjct: 5   FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++A+++VRE +RDE++E+A
Sbjct: 65  TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAVSLVREKKRDEIKEKA 124

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDISNFDIPG-- 183
            +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ +KEI+IEVA + S+  S FDIPG  
Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +GI+NLS++  K+    R K  + +V+  +  L+ DES++L+D + + ++++++ EN
Sbjct: 185 GAQMGIMNLSDILGKM--GNRTKVRKTTVRDAFKPLIDDESEKLLDQEQIIQEALRVAEN 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DKI  +D G    VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA
Sbjct: 243 DGIVFIDEIDKIATKDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L  L + D R ILT+ E++LI QY  LM TE + L+ T
Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D    +  IDA YVR  I
Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYVRKSI 422

Query: 424 GDFPSETDMYHFIL 437
           G+  ++ D+  FIL
Sbjct: 423 GELAADIDLSRFIL 436


>gi|82778893|ref|YP_405242.1| ATP-dependent protease ATP-binding subunit HslU [Shigella
           dysenteriae Sd197]
 gi|309783874|ref|ZP_07678519.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1617]
 gi|123728481|sp|Q32AA4|HSLU_SHIDS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|81243041|gb|ABB63751.1| heat shock protein hslVU, ATPase subunit [Shigella dysenteriae
           Sd197]
 gi|308928245|gb|EFP73707.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae
           1617]
 gi|332998439|gb|EGK18037.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-272]
 gi|333014132|gb|EGK33489.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri
           K-227]
          Length = 443

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/443 (49%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA AP IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPLIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N +  +IGARRL TV+ER++E+IS+ ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    ++ D+  FIL
Sbjct: 421 DADYVSKHLDALVADEDLSRFIL 443


>gi|16762344|ref|NP_457961.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143832|ref|NP_807174.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213161768|ref|ZP_03347478.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416546|ref|ZP_03349690.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213426207|ref|ZP_03358957.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213615559|ref|ZP_03371385.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648009|ref|ZP_03378062.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289828420|ref|ZP_06546302.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|21759176|sp|Q8Z2Z0|HSLU_SALTI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Heat shock protein HslU; AltName: Full=Unfoldase
           HslU
 gi|25296071|pir||AB0939 heat shock protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504648|emb|CAD09532.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139468|gb|AAO71034.1| heat shock protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 443

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/443 (49%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + I
Sbjct: 361 TEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  H+    ++ D+  FIL
Sbjct: 421 DAEYVSKHLDALVADEDLSRFIL 443


>gi|77462070|ref|YP_351574.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides 2.4.1]
 gi|123744260|sp|Q3J6B1|HSLU_RHOS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77386488|gb|ABA77673.1| Heat shock protein HslVU, ATPase subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 433

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/433 (54%), Positives = 326/433 (75%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ 
Sbjct: 62  GKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+    I+I+VADTS+ +   D  G 
Sbjct: 122 RAAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDSTVIEIDVADTSNPMQMLDPTGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NL E+F K    GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  
Sbjct: 182 GQMGMMNLGEIFGKAF-GGRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTE
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G
Sbjct: 361 DGIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLG 420

Query: 425 DFPSETDMYHFIL 437
           +    +D+  ++L
Sbjct: 421 ELARSSDLSRYVL 433


>gi|126460959|ref|YP_001042073.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides ATCC 17029]
 gi|166221600|sp|A3PG35|HSLU_RHOS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126102623|gb|ABN75301.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 433

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/433 (54%), Positives = 327/433 (75%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ 
Sbjct: 62  GKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AE+R+++A+ G+ A   TRE+FR KL+ GE+ +  I+I+VADTS+ +   D  G 
Sbjct: 122 RAAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NL E+F K    GR ++ +M+V + +  LM +E+D+L+D + V   +++ V+  
Sbjct: 182 GQMGMMNLGEIFGKAF-GGRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L LQYK LM+TE + + FTE
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G
Sbjct: 361 DGIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFQAPDRSGEEVTVDAAYVEKNLG 420

Query: 425 DFPSETDMYHFIL 437
           +    +D+  ++L
Sbjct: 421 ELARSSDLSRYVL 433


>gi|294139044|ref|YP_003555022.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea
           DSS12]
 gi|293325513|dbj|BAJ00244.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea
           DSS12]
          Length = 441

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/441 (52%), Positives = 310/441 (70%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ+AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQQNAKRAVAIALRNRWRRMQLDPDLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE    + + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKSKVK 122

Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR++FRKKLR+G++ DKEI+I+V+   + I
Sbjct: 123 AEEAAEERILDALLPKPKEDWDNEKPDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQTGI 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG G  K+ +M +++ Y  ++ +E+ +L++ + +   
Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDMKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE +GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG +V+TK+G + TDHI
Sbjct: 241 AIELVEQHGIVFLDEIDKICRRGESTGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QY  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQYVALMATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT D I+A+A  A  +N    +IGARRL TVMER++E++S+ ASD      VIDA
Sbjct: 361 GVKIEFTVDGIEAIAQAAWQVNERTENIGARRLHTVMERLMEELSYGASDKSGTESVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+ H+ +   + D+  FIL
Sbjct: 421 KYVKDHLDELVQDEDLSRFIL 441


>gi|299133207|ref|ZP_07026402.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2]
 gi|298593344|gb|EFI53544.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2]
          Length = 433

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/434 (59%), Positives = 336/434 (77%), Gaps = 3/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL   LR+E++PKNIL++GPTGV
Sbjct: 2   TDFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLQLTGSLREEVLPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE +R +V  
Sbjct: 62  GKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRKDVEA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPG 183
           +A + AEER+LDALVG  A+++TR+ FR++LR GE++DKEI++E  A     +       
Sbjct: 122 RAELAAEERVLDALVGANASASTRDSFRRRLRAGELNDKEIEVETQAGGGPSMFEIPGMP 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GA +G ++L ++F K+   GR K  +++V   Y  L+ +ESD+L+D + + RD+I  VEN
Sbjct: 182 GAQMGAISLGDIFGKM--GGRTKMRKLTVADSYEVLVNEESDKLLDDEALTRDAIHAVEN 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI  R+      VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 240 NGIVFLDEIDKICVREGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ ES+LI QY  LM TEG+ LD T
Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELQALVRDDLRRILTEPESSLIKQYVALMATEGVTLDIT 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALADVAV +N++V +IGARRLQTV+ERVL++ SF A D+  +TV IDA YV+ +I
Sbjct: 360 DDAIDALADVAVAVNASVENIGARRLQTVLERVLDETSFHAPDMHGQTVTIDAAYVQKYI 419

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 420 GDLAKNADLSRFIL 433


>gi|77920006|ref|YP_357821.1| ATP-dependent protease ATP-binding subunit HslU [Pelobacter
           carbinolicus DSM 2380]
 gi|123573597|sp|Q3A1V6|HSLU_PELCD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77546089|gb|ABA89651.1| heat shock protein HslVU ATPase subunit HslU [Pelobacter
           carbinolicus DSM 2380]
          Length = 445

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/445 (50%), Positives = 316/445 (71%), Gaps = 13/445 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+  +LRDE+ PKNI+++GPTGV
Sbjct: 2   TNFTPREIVSELDRYIIGQKQAKRAVAVALRNRWRRQQVADELRDEIAPKNIIMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE +KFTE+GYVGR+VE ++RDL+D+AI ++RE    +VR 
Sbjct: 62  GKTEIARRLARLAQAPFIKVEASKFTEVGYVGRDVESMVRDLLDLAIIMIREEEARKVRV 121

Query: 125 QASINAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEER+LD L+    + +            TR+  RK LR G + ++++++EV   
Sbjct: 122 KAEDLAEERLLDLLLPGAQSRDPDLSGEEAGEGGTRDKLRKLLRKGALDERKVELEVQAA 181

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     P G     +N  E+F  +    + K+ ++ V +    L+  E++RL+DM+ 
Sbjct: 182 QMPMMEVFTPQGTEEMGINFKEMFGNLF-PKKTKRRQIKVSEAREILIEQEAERLVDMEK 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V+  + + VE  GI+F+DE DKI  ++   G  VSREGVQRD+LP+VEGS+VSTKYG + 
Sbjct: 241 VNTLARERVEQSGIIFIDEIDKIAGQNGRQGPDVSREGVQRDILPIVEGSTVSTKYGPVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILF+A+GAFHV++P+DL+PE+QGRFP+RV L SL + +F  ILT+ ++ LI QY+ L
Sbjct: 301 TDHILFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLGEEEFFRILTEPKNALIRQYEAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M+TEGI L FTE++I  +A +A  +NS   +IGARRL T+ME++LE++SF A + +E++V
Sbjct: 361 METEGIRLHFTEEAIREIARIATQVNSQTENIGARRLHTIMEKLLEELSFEAPEHREQSV 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID +YVR  + D   + D+  +IL
Sbjct: 421 EIDVDYVRKQLSDIARDEDLSRYIL 445


>gi|260595965|ref|YP_003208536.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter
           turicensis z3032]
 gi|260215142|emb|CBA26936.1| ATP-dependent hsl protease ATP-binding subunit hslU [Cronobacter
           turicensis z3032]
          Length = 444

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 306/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+     +             R+ FRKKLR+GE+ DKEI+I +A    
Sbjct: 123 AEEMAEERILDALIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTADDFERILTEPNASVTVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEG+ ++FT+D I  +A  A  +N T  +IGARRL TV+ER++EDIS+ ASDL  +T+ 
Sbjct: 361 ETEGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV  H+    ++ D+  FIL
Sbjct: 421 IDADYVSKHLDALVADEDLSRFIL 444


>gi|226326796|ref|ZP_03802314.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198]
 gi|225204633|gb|EEG86987.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198]
          Length = 444

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 306/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREI SELDR+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    D+ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIDKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+IE++ T  
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGVAEQASEPSAARQSFRKKLREGQLDDKEIEIELSATPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M ++  +  ++ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKMKIKDAFKLIVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           + +I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QQAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ LM
Sbjct: 301 DHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYEALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ + FTED I  +A+ A  +N T  +IGARRL TV+ER++E+IS+ AS+ Q ++++
Sbjct: 361 ATEGVSISFTEDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGQSIL 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV+ H+ +  ++ D+  FIL
Sbjct: 421 IDAEYVKQHLDELVADEDLSRFIL 444


>gi|88858829|ref|ZP_01133470.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata
           D2]
 gi|88819055|gb|EAR28869.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata
           D2]
          Length = 441

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/440 (50%), Positives = 307/440 (69%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLPEDLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI +VRE +  +VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLADIAIKMVREQQTKKVRHRA 123

Query: 127 SINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEERIL+AL+          +T  S+TR+ FRKKLR+G++ DKEI+I++A     + 
Sbjct: 124 EEAAEERILEALLPSAKDTWGEAETKDSSTRQTFRKKLREGQLDDKEIEIDLAQAQMGVE 183

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG        L  +F  +    R K  ++ ++     L+ +E+ +L++ + +   +
Sbjct: 184 IMAPPGM-EDMTNQLQSMFQNLGNEKRTK-RKLKIKDAIKLLIEEEASKLVNPEELKEQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG++VSTK+G I TDHIL
Sbjct: 242 IHAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVSTKHGMIKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           F+ASGAF +S+P+DL+PE+QGR P+RV L  L   DF+ ILT+  ++L  QY+ LM TEG
Sbjct: 302 FVASGAFQMSKPSDLIPELQGRLPIRVELSPLTAHDFKRILTEPNASLTEQYQALMGTEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + ++F E++I+ +A+ A  +N    +IGARRL TVME+++E+IS+ AS+     +VIDA 
Sbjct: 362 VKVEFNEEAIEKIAEAAWRVNEKTENIGARRLHTVMEKLMEEISYDASEKSGDHIVIDAA 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V  ++G    + D+  FIL
Sbjct: 422 FVTKYLGTLVEDEDLSRFIL 441


>gi|114564917|ref|YP_752431.1| ATP-dependent protease ATP-binding subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122298445|sp|Q07WM2|HSLU_SHEFN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114336210|gb|ABI73592.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella
           frigidimarina NCIMB 400]
          Length = 441

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQQ+AKR+VA+ALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDAHIIGQQNAKRSVAVALRNRWRRMQLEPELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE +  + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRHR 122

Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+ K            S TR+VFRKKLR+G++ DKEI+I+VA     +
Sbjct: 123 AEEMAEERILDALLPKPKDDWDTDQKDDSTTRQVFRKKLREGQLDDKEIEIDVAAPQVGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LF   +G    K+ ++ ++  Y +L+ DE+ +L++ + +   
Sbjct: 183 EIMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAYKQLVEDEAAKLVNQEDLKEQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I++VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHI
Sbjct: 241 AIELVEQNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +S+P+DL+PE+QGR P+RV L +L  +DF+ ILT+  ++L  Q+  LM TE
Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALTAADFKRILTEPFASLTEQHVALMNTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FTE  I+ +A+ A  +N    +IGARRL TVME+++E+IS+ AS+      VIDA
Sbjct: 361 GVTIEFTESGIERIAEAAWQVNERTENIGARRLHTVMEKLMEEISYDASEKSGSKFVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV  H+     + D+  FIL
Sbjct: 421 EYVNDHLDTLVQDEDLSRFIL 441


>gi|120553750|ref|YP_958101.1| ATP-dependent protease ATP-binding subunit HslU [Marinobacter
           aquaeolei VT8]
 gi|226704528|sp|A1TYU5|HSLU_MARAV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120323599|gb|ABM17914.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           aquaeolei VT8]
          Length = 443

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE        +A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREQEMKRHEHRA 123

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+              A S+TR++FRKKLR+GE+ DKEI+I++  + + 
Sbjct: 124 LDAAEDRILDALLPPPRDFNEDSQRTNADSSTRQLFRKKLREGELDDKEIEIDLRSSGAG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +FS  + S ++K  +M V      +  +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFSN-LSSDKRKTRKMKVADAMKRVKDEEAAKLVNEEEIKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGSI TDH
Sbjct: 242 KAIQAVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L+ QY+ LM T
Sbjct: 302 ILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDASLVQQYEALMGT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F +D+I  +A+VA  +N T  +IGARRL TV+ER+LE +S+ A D    T  + 
Sbjct: 362 EGVKLTFADDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYDAGDQVTDTFEVT 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV   +G+   + D+  +IL
Sbjct: 422 ADYVDEKLGELSEDEDLSRYIL 443


>gi|322834997|ref|YP_004215024.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602]
 gi|321170198|gb|ADW75897.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602]
          Length = 444

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 302/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQPDEAQEPSAARQNFRKKLREGQLDDKEIEISLASGPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   MG+ ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TNQLQSMFQS-MGAQKQKPRKLKIKEALKLLIEEEAAKLVNPEDLK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  + P+DL+PE+QGR P+RV L++L+  DF  ILT+  ++L  QYK LM
Sbjct: 301 DHILFIASGAFQTASPSDLIPELQGRLPIRVELQALSTEDFERILTEPSASLTHQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ +DFT D I  +A+ A  +N T  +IGARRL TV+ER++EDIS+ AS+    ++ 
Sbjct: 361 ATEGVTIDFTADGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASESNGISIN 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YVR H+    ++ D+  FIL
Sbjct: 421 IDADYVRSHLDQLVADEDLSRFIL 444


>gi|238892334|ref|YP_002917068.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262041701|ref|ZP_06014893.1| heat shock protein HslVU [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330004458|ref|ZP_08304952.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS
           92-3]
 gi|238544650|dbj|BAH61001.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040963|gb|EEW42042.1| heat shock protein HslVU [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536616|gb|EGF62943.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS
           92-3]
          Length = 444

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 306/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERVLDVLIPPAKNNWGQTEPSQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +++I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV 
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|270265177|ref|ZP_06193439.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia
           odorifera 4Rx13]
 gi|270040811|gb|EFA13913.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia
           odorifera 4Rx13]
          Length = 444

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/444 (49%), Positives = 304/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLDEMLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIEKNRTR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLASAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  + K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LGGQKHKPRKLKIKEAFKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM
Sbjct: 301 DHILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS++  +++ 
Sbjct: 361 GTEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YVR H+ +  ++ D+  FIL
Sbjct: 421 IDADYVRNHLDELVADEDLSRFIL 444


>gi|218528690|ref|YP_002419506.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium
           chloromethanicum CM4]
 gi|240137220|ref|YP_002961689.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens AM1]
 gi|254559232|ref|YP_003066327.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens DM4]
 gi|254802310|sp|B7KZ48|HSLU_METC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218520993|gb|ACK81578.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           chloromethanicum CM4]
 gi|240007186|gb|ACS38412.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens AM1]
 gi|254266510|emb|CAX22274.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Methylobacterium extorquens DM4]
          Length = 437

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 268/436 (61%), Positives = 343/436 (78%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ 
Sbjct: 62  GKTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG 183
           +A   AE RILDALVG TA+  TRE FRKKLR  E+ DKE++IE+A + S  +  F+IPG
Sbjct: 122 KAEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGMPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G +N+S++  K +G  R K  R++V + Y  L+ +ESD+L+D D + R++I+ V
Sbjct: 182 MPGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIAS
Sbjct: 242 EDNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LD
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR 
Sbjct: 362 FTEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRD 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D  +  D+  FIL
Sbjct: 422 RVEDLAANADLSRFIL 437


>gi|254487280|ref|ZP_05100485.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp.
           GAI101]
 gi|214044149|gb|EEB84787.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp.
           GAI101]
          Length = 435

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/435 (57%), Positives = 330/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + R+  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIIMTRDHMREDVKV 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A   AEER++DA+ G  A   TR++FRKKL+ GE+    ID+EV DTSS     DIPG 
Sbjct: 122 SAHKAAEERVIDAIAGADAREGTRDMFRKKLKAGELDATMIDLEVTDTSSPFPTMDIPGQ 181

Query: 185 ASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
              G+   NL +LF K MG  + KK  ++V + Y  L+ +E+D+L+D +TV+R +I  VE
Sbjct: 182 PGGGMGMMNLGDLFGKAMGGRKVKKR-LTVAESYEVLIGEEADKLLDDETVNRAAIDTVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVTVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I ALA +A ++N ++ +IGARRL TVMERV E++SF+A D   +TVV+D ++V  +
Sbjct: 361 TDEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFTAPDRSGETVVVDGDFVEKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELTRSTDLSRYVL 435


>gi|157373025|ref|YP_001481014.1| ATP-dependent protease ATP-binding subunit HslU [Serratia
           proteamaculans 568]
 gi|167017229|sp|A8GL96|HSLU_SERP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157324789|gb|ABV43886.1| heat shock protein HslVU, ATPase subunit HslU [Serratia
           proteamaculans 568]
          Length = 444

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/444 (50%), Positives = 306/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIDKNRTR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S+ R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEEHQEPSSARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM
Sbjct: 301 DHILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT + I  +A+ A  +N +  +IGARRL TV+ER++EDIS+ AS++  +++ 
Sbjct: 361 GTEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YVR H+ +  ++ D+  FIL
Sbjct: 421 IDADYVRNHLDELVADEDLSRFIL 444


>gi|312114749|ref|YP_004012345.1| heat shock protein HslVU, ATPase HslU [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219878|gb|ADP71246.1| heat shock protein HslVU, ATPase subunit HslU [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 437

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 266/434 (61%), Positives = 340/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQ  AKRAVAIALRNRWRRQQL  D+R+E++PKNIL++GPTGVG
Sbjct: 5   NFSPREIVSELDRHIVGQHAAKRAVAIALRNRWRRQQLKDDMREEVLPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+V+QIIRDLV+ AI +VRE++R EVR +
Sbjct: 65  KTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVDQIIRDLVESAIGLVRETKRKEVRAK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+L ALVG+ A+  T++ FRKKLRDGE+ +KEI+++VADT   +  F+IPG  
Sbjct: 125 AHLLAEERVLMALVGQHASPATKDAFRKKLRDGELDEKEIEVQVADTGGGVGGFEIPGMP 184

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+SV ++NL+++  K     R K  R+SV+  Y  L+ DESD+L+D + V +D+I  VE 
Sbjct: 185 GSSVSMMNLNDVLGKAF-GQRTKTRRLSVRDSYEVLINDESDKLLDNEAVVQDAITAVEE 243

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA
Sbjct: 244 NGIVFLDEIDKITARSERLGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 303

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+D+LPE+QGR P+RV L++L   DFR IL + +S+LI Q   LM TEG+ L+F+
Sbjct: 304 FHVAKPSDMLPELQGRLPIRVELQALTGDDFRRILREPKSSLIKQSVALMATEGVELEFS 363

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED+IDA+ADVAV +N+ V +IGARRL TVMERVL++ISF A+D      VIDA YV+  +
Sbjct: 364 EDAIDAIADVAVEVNANVENIGARRLSTVMERVLDEISFEAADKARTKFVIDATYVKTQV 423

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 424 GDLAKNADLSKFIL 437


>gi|197287029|ref|YP_002152901.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227354726|ref|ZP_03839144.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|238690078|sp|B4F171|HSLU_PROMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|194684516|emb|CAR46300.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227165169|gb|EEI49997.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 446

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/446 (50%), Positives = 308/446 (69%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREI SELDR+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADT 172
           A   AEERILD L+     +               R+ FRKKLR+G++ DKEI+IE+A T
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGVTESASSSEPSAARQAFRKKLREGQLDDKEIEIELAAT 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F   +   ++K  +M +++ +  ++ +E+ +L++ + 
Sbjct: 183 PMGVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKARKMKIKEAFKLIVEEEAAKLVNPEE 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           + + +I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G +
Sbjct: 241 LKQQAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY+ 
Sbjct: 301 KTDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYQA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LM TEG+ ++F++D I  +A+ A  +N T  +IGARRL TV+ER++E+IS+ AS+ Q +T
Sbjct: 361 LMATEGVSINFSQDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGET 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++IDAEYV+ H+ +  ++ D+  FIL
Sbjct: 421 ILIDAEYVKQHLDELVADEDLSRFIL 446


>gi|212712511|ref|ZP_03320639.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM
           30120]
 gi|212684727|gb|EEB44255.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM
           30120]
          Length = 444

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 304/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNEHLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEV+    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEPVDEQSPARQAFRKKLREGQLDDKEIEIEVSAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKPRKMKIKEAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + T
Sbjct: 241 EQAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM
Sbjct: 301 DHILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPNASLTEQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+   +++ 
Sbjct: 361 ATEGVSIEFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASERDGQSIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYVR H+ +  ++ D+  FIL
Sbjct: 421 IDAEYVRQHLDELVADEDLSRFIL 444


>gi|152972726|ref|YP_001337872.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|166221589|sp|A6TGC1|HSLU_KLEP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150957575|gb|ABR79605.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 444

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 306/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+V+IALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVSIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +++I  VE +GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV 
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|37528578|ref|NP_931923.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|62286848|sp|Q7MYC1|HSLU_PHOLL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|36788016|emb|CAE17135.1| ATP-dependent Hsl protease ATP-binding subunit HslU (heat shock
           protein) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 443

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDKAKRAVAIALRNRWRRMQLDETLRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I+VA T  
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQTETQVEPSAARQAFRKKLREGQLDDKEIEIDVATTPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   + K  ++ ++  +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKHKSRKLKIKDAFKLLIEEEASKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM+
Sbjct: 301 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTKDFERILTEPSASLTEQYKALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+I+ FT+D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+ + ++V I
Sbjct: 361 TEGMIISFTDDGISKIAESAWQVNESTENIGARRLHTVLERLIEDISFEASERRGQSVDI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV+ H+ +  ++ D+  FIL
Sbjct: 421 DADYVKKHLDELVADEDLSRFIL 443


>gi|292486619|ref|YP_003529489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora CFBP1430]
 gi|292897854|ref|YP_003537223.1| ATP-dependent Hsl protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291197702|emb|CBJ44797.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein)
           [Erwinia amylovora ATCC 49946]
 gi|291552036|emb|CBA19073.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora CFBP1430]
 gi|312170682|emb|CBX78945.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           amylovora ATCC BAA-2158]
          Length = 443

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD LV     +             R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLVPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAMSGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  ++K  ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNI-GGQKQKPRKLKIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|163850087|ref|YP_001638130.1| ATP-dependent protease ATP-binding subunit [Methylobacterium
           extorquens PA1]
 gi|238687371|sp|A9W0F3|HSLU_METEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163661692|gb|ABY29059.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium
           extorquens PA1]
          Length = 437

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 268/436 (61%), Positives = 343/436 (78%), Gaps = 3/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ 
Sbjct: 62  GKTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG 183
           +A   AE RILDALVG TA+  TRE FRKKLR  E+ DKE++IE+A + S  +  F+IPG
Sbjct: 122 KAEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGLPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G +N+S++  K +G  R K  R++V + Y  L+ +ESD+L+D D + R++I+ V
Sbjct: 182 MPGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E+ GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHILFIAS
Sbjct: 242 EDNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFHVS+P+DLLPE+QGR P+RV L+ L   DF+ ILT TE++LI Q   LM+TEG+ LD
Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLD 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D   +TV IDA YVR 
Sbjct: 362 FTEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRD 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D  +  D+  FIL
Sbjct: 422 RVEDLAANADLSRFIL 437


>gi|83953063|ref|ZP_00961785.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83842031|gb|EAP81199.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 435

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/435 (57%), Positives = 330/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKV 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A   AEER++DA+ GK A   TR++FRKKL+ GE+ D  I++EVADTSS     DIPG 
Sbjct: 122 SAHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQ 181

Query: 185 ASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
              G+   NL +LF K M  GR  K R+SV + Y  L+ +E+D+L+D +TV+R +I+ VE
Sbjct: 182 PGGGMGMMNLGDLFGKAM-GGRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D   + + +D ++V  +
Sbjct: 361 TDEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELTRSTDLSRYVL 435


>gi|83942014|ref|ZP_00954476.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
 gi|83847834|gb|EAP85709.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
          Length = 435

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/435 (57%), Positives = 330/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKV 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A   AEER++DA+ GK A   TR++FRKKL+ GE+ D  I++EVADTSS     DIPG 
Sbjct: 122 SAHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQ 181

Query: 185 ASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
              G+   NL +LF K M  GR  K R+SV + Y  L+ +E+D+L+D +TV+R +I+ VE
Sbjct: 182 PGGGMGMMNLGDLFGKAM-GGRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D   + + +D ++V  +
Sbjct: 361 TDEGIQALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELTRSTDLSRYVL 435


>gi|206577264|ref|YP_002241200.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella
           pneumoniae 342]
 gi|288937836|ref|YP_003441895.1| heat shock protein HslVU, ATPase HslU [Klebsiella variicola At-22]
 gi|290513062|ref|ZP_06552425.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp.
           1_1_55]
 gi|238065800|sp|B5XZ37|HSLU_KLEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206566322|gb|ACI08098.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella
           pneumoniae 342]
 gi|288892545|gb|ADC60863.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella variicola
           At-22]
 gi|289774444|gb|EFD82449.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp.
           1_1_55]
          Length = 444

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 307/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    D+ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+     +             R+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERVLDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +++I  VE +GIVF+DE DKI  R   + G  VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 QEAIDAVEQHGIVFIDEIDKICKRGGNSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L   DF  ILT+  +++ +QYK LM
Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FTED I  +A  A  +N T  +IGARRL TV+ER++EDIS+ AS++  +TV+
Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVI 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV  H+    ++ D+  FIL
Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444


>gi|146278980|ref|YP_001169139.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166221601|sp|A4WWS0|HSLU_RHOS5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145557221|gb|ABP71834.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 433

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/433 (54%), Positives = 323/433 (74%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  D+RDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDIRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI   R   R++V+ 
Sbjct: 62  GKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE+R+++A+ G+ A   TRE+FR KL+ GE+    I++EVADTS+ +   D  G 
Sbjct: 122 RAVKAAEDRVIEAIAGRDAREQTREMFRGKLKRGELDATVIEVEVADTSNPMQMLDPTGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G++NL E+F K    GR  + +M+V + +  LM +E+D+L+D + V   +++ V+  
Sbjct: 182 GQMGMMNLGEIFGKAF-GGRTTRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQEN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  IL++T++ L  QYK LMKTE + + FTE
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTRQYKALMKTEKVGITFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           + I ALA +A  +N +V +IGARRL TVMERV E++SF A D   + V +DA YV  ++G
Sbjct: 361 EGIKALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLG 420

Query: 425 DFPSETDMYHFIL 437
           +    TD+  ++L
Sbjct: 421 ELARSTDLSRYVL 433


>gi|332288323|ref|YP_004419175.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium
           anatis UMN179]
 gi|330431219|gb|AEC16278.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium
           anatis UMN179]
          Length = 444

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/443 (52%), Positives = 310/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDKHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVA+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAMKLVRQTEINKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                SNTR++FRKKLR+G++ DKEI+I+VA   +
Sbjct: 123 AEEAAEERILDVLLPPAKDQWGNVESNDSHSNTRQIFRKKLREGQLDDKEIEIDVAAGGT 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  +F   + SG+ +K +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 VGVEIMAPPGMEEMTNQLQSMFQS-LSSGQTQKRKMKIKDALKVLIEDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+++TK+G + TD
Sbjct: 242 LKAIEAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGSTINTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VSRP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM+
Sbjct: 302 HILFIASGAFQVSRPSDLIPELQGRLPIRVELGALSAKDFERILTEPNASLTEQYKALMQ 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TV+ER+++ ISF ASD+  + V I
Sbjct: 362 TEGVTIEFTQDAIATIAEAAFRVNEKTENIGARRLHTVLERLMDKISFEASDMSGEKVTI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV+  +GD     D+  FIL
Sbjct: 422 DEAYVKSALGDVVENEDLSRFIL 444


>gi|21328719|gb|AAM48725.1| heat shock protein HslVU, ATPase subunit HslU [uncultured marine
           proteobacterium]
          Length = 435

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/435 (56%), Positives = 328/435 (75%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+I+GQ DAKRAVA+A+RNRWRR+QLP +LRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRHIVGQNDAKRAVAVAMRNRWRRKQLPDELRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD +I + R+  R++VR 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSSIAVTRDHMREDVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER+++A+ G  A   TRE+FRKKLR GE+ D  I++EVADTS+ +S  D+PG 
Sbjct: 122 RAKEAAEERVIEAIAGADARDATREMFRKKLRSGELDDTVIELEVADTSNPMSMLDLPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G++NL ++F K M  GR  + +M+V   Y  L+ +E+D+L+D + V + +++ VE
Sbjct: 182 PGSQMGMMNLGDIFGKAM-GGRTSRKKMTVAASYDVLLGEEADKLLDDEIVTKAALKAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QSGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L+ L + DF  IL++TE+ L LQY  LM TE + + F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELRDLTEEDFIRILSETENALTLQYSALMSTEDVSVSF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           +ED I ALA  A  +N +V +IGARRL TV+ERV E++SF+A D     VVID  YV  H
Sbjct: 361 SEDGIKALAQAAAEVNRSVENIGARRLYTVIERVFEELSFAAPDQAGSEVVIDKAYVNKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +      TD+  ++L
Sbjct: 421 LDSLLQSTDLSRYVL 435


>gi|259906819|ref|YP_002647175.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia pyrifoliae
           Ep1/96]
 gi|224962441|emb|CAX53896.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia
           pyrifoliae Ep1/96]
 gi|283476606|emb|CAY72434.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia
           pyrifoliae DSM 12163]
          Length = 443

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+     +             R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  ++K  ++ +++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNI-GGQQQKPRKLKIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|73539874|ref|YP_294394.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha
           JMP134]
 gi|123626064|sp|Q476Y3|HSLU_RALEJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|72117287|gb|AAZ59550.1| Heat shock protein HslU [Ralstonia eutropha JMP134]
          Length = 443

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/445 (52%), Positives = 313/445 (70%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SNTR+VFRKKLR+G++ DK+I++EVA  
Sbjct: 121 RTKAEEAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEVAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  MG G+K + +M V++ +  L+ +E+ +L++ + 
Sbjct: 181 LPSMDIMGPPGMEEM-TEQIRSMFAG-MGQGKKHRRKMKVKEAFKLLIDEEAAKLVNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I  VE  GIVFLDE DKI  R    G  VSR+GVQRDLLPLVEG++VSTKYG I 
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKIANRSELGGGEVSRQGVQRDLLPLVEGTTVSTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L F  D I  LA++A ++N  V +IGARRL TVMER+LED+SF AS    +TV
Sbjct: 359 LKTEEVELQFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   +GD     D+  ++L
Sbjct: 419 TIDAAYVNERLGDLAVNEDLSRYVL 443


>gi|330447101|ref|ZP_08310751.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491292|dbj|GAA05248.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 443

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+              + S+TR+ FRKKLR+G++ DKEI++++A    
Sbjct: 123 AEELAEERILDVLLPPARDAWGQNEASESESSTRQSFRKKLREGKLDDKEIEMDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK +M ++        +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGNTTKKRKMKIKDALKAATEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QYK LM 
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++F+ D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +   I
Sbjct: 361 TESVEIEFSADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+F  + D+  FIL
Sbjct: 421 DAAYVKERLGEFVQDEDLSRFIL 443


>gi|251793772|ref|YP_003008502.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535169|gb|ACS98415.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           aphrophilus NJ8700]
          Length = 443

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/443 (52%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQREIVKNRTK 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+            + + SNTR++FRKKLR+G++ DKE++I+VA    
Sbjct: 123 AEEAAEERILDALLPAAKNQWGETESRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        L  +F   + SG+ KK +M +++    L+ DE+ +L+  + + 
Sbjct: 183 GVEIMAPPGM-EDMTSQLQSMFQN-LSSGQTKKRKMKIKEALKTLIDDEAAKLVTPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV I
Sbjct: 361 TEGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +GD     D+  FIL
Sbjct: 421 DAAYVSEALGDVVENEDLSRFIL 443


>gi|307824296|ref|ZP_07654522.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter
           tundripaludum SV96]
 gi|307734676|gb|EFO05527.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter
           tundripaludum SV96]
          Length = 439

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/440 (51%), Positives = 308/440 (70%), Gaps = 9/440 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIVSELD++I+GQ +AKRAVAIALR+RWRRQQ+   LR+E+ PKNIL++GPTGV
Sbjct: 2   TQMTPKEIVSELDKHIVGQANAKRAVAIALRDRWRRQQVDPALREEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDLVD A+ + R    D+V  
Sbjct: 62  GKTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLVDTAVKMTRTIEMDKVEN 121

Query: 125 QASINAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           +A   AE+RILD L+ +           +TR+  RKKLR+G++ DKEI+I++      + 
Sbjct: 122 KAFDAAEDRILDILLPRANGGMLSDTEESTRQKMRKKLREGDLDDKEIEIDMHLAPMGVE 181

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   +GSG+ +  +M + K    L  +E+ +L++ D +   +
Sbjct: 182 IMAPPGMEEM-TSQLQGMFQN-LGSGKTRSRKMKINKALKVLQDEEASKLVNEDDIRLRA 239

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVFLDE DKI  R    G  VSREGVQRDLLPLVEG++VSTKYGSI TDHIL
Sbjct: 240 VESVEQNGIVFLDEIDKICKRSELGGGEVSREGVQRDLLPLVEGTTVSTKYGSIKTDHIL 299

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGRFP+RV L +L+  DF  ILT+ +++L  QY  L+ TEG
Sbjct: 300 FIASGAFHLTKPSDLIPELQGRFPIRVELDALSADDFVRILTEPDASLTEQYTALLGTEG 359

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F+ED I  +A+    +N T  +IGARRL TV+ER+LEDIS++A +L    +VIDA 
Sbjct: 360 VSLSFSEDGIKRIAEFGWQVNETTENIGARRLHTVLERLLEDISYNAPELIGNNIVIDAA 419

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+ +F  + D+  +IL
Sbjct: 420 YVNDHLAEFVEDEDLSRYIL 439


>gi|254482739|ref|ZP_05095977.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma
           proteobacterium HTCC2148]
 gi|214037098|gb|EEB77767.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma
           proteobacterium HTCC2148]
          Length = 440

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/440 (52%), Positives = 310/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVSELDQHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE     VR +
Sbjct: 63  KTEIARRLAKLADAPFVKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEMVRVRFR 122

Query: 126 ASINAEERILDALVGKTATSN------TREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A  +AEERILD L+     S       TR++ RKKLR+GE+ DKEI++E++  +  +   
Sbjct: 123 AEESAEERILDILLPPARDSEGSTGESTRQLLRKKLREGELDDKEIEVEISAPAMGMEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  +FS  M  G++K  +M V+  +  L  +E+ ++++ D + + ++ 
Sbjct: 183 APPGMEEM-TNQLQGMFSN-MSKGQRKNQKMPVKAAFTALCDEEAAKMVNEDELKQKAVD 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTK+G I TDHILFI
Sbjct: 241 AAEQNGIVFIDELDKVAKRSEGAGADVSREGVQRDLLPLIEGSTVSTKHGMIKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ L+ TEG+ 
Sbjct: 301 ASGAFHLAKPSDLIPELQGRLPIRVELNALGPDDFERILTEPNASLTEQYQALLATEGLN 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAE 417
           ++FTED +  +A+ A  +N    +IGARRL TVMER+LE  SFSA+D  L +  +++DA 
Sbjct: 361 VEFTEDGLRGIAETAWQVNEKTENIGARRLHTVMERLLEHASFSAADTGLSDSKLIVDAT 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   +    S  D+  FIL
Sbjct: 421 YVSDQLEALSSNEDLSRFIL 440


>gi|254462139|ref|ZP_05075555.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales
           bacterium HTCC2083]
 gi|206678728|gb|EDZ43215.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 443

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/435 (55%), Positives = 336/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 10  TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 69

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+ AI+  RE  R++V+ 
Sbjct: 70  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVENAISETREYMREDVKS 129

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER+++A+ G+ A   TRE+FRKKLR G++ +  I++E+ADTS+ +S F+IPG 
Sbjct: 130 KAEAAAEERVIEAIAGEGARDATREMFRKKLRSGDLDNTVIELEIADTSNPMSGFEIPGQ 189

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+++G++N+ +LF K M  GR  + +M+V + Y  L+ DE+D+L+D ++V R +++ VE
Sbjct: 190 PGSNMGMMNIGDLFGKAM-GGRTTRKKMTVSESYDVLIGDEADKLLDDESVTRAALEAVE 248

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+  R    G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASG
Sbjct: 249 QNGIVFLDEIDKVCTRADARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASG 308

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM+TE +I+ F
Sbjct: 309 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMQTEEVIVSF 368

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + + +D+ +V  +
Sbjct: 369 TDDGIAALAKIAAEVNQSVENIGARRLYTVLERVFEELSFTAPDRGGEEISVDSAFVETY 428

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 429 LGELSRSTDVSRYVL 443


>gi|262273450|ref|ZP_06051264.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia
           hollisae CIP 101886]
 gi|262222428|gb|EEY73739.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia
           hollisae CIP 101886]
          Length = 444

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 303/443 (68%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELDR+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDRHIIGQNKAKRAVAIALRNRWRRMQLNEELRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+              A S TR+ FRKK+R+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLLPPPRDAWGQSDEPKADSATRQSFRKKIREGKLDDKEIEINLAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G    KK +M ++        +E+ +L++ + + 
Sbjct: 183 SMEIMAPPGMEEM-TSQLQSMFQNLGGGTTSKKRKMKLKDALKAATEEEAAKLVNHEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 EQAIAAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L++L+ SDF+ ILT+  ++L  QY  LM 
Sbjct: 302 HILFIASGAFQVASPSDLIPELQGRLPIRVELEALSASDFKRILTEPNASLTEQYIALMG 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + L FTED I+ +A+ A  +N    +IGARRL TVMER++++ISFSAS+   ++  I
Sbjct: 362 TEDVNLTFTEDGIEEIANAAWRVNEKTENIGARRLHTVMERLVDEISFSASERGGESFEI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYVR  + +   + D+  FIL
Sbjct: 422 DAEYVRNCLEELVDDEDLSRFIL 444


>gi|159045981|ref|YP_001534775.1| ATP-dependent protease ATP-binding subunit HslU [Dinoroseobacter
           shibae DFL 12]
 gi|189043909|sp|A8LPA9|HSLU_DINSH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157913741|gb|ABV95174.1| ATP-dependent HslUV protease [Dinoroseobacter shibae DFL 12]
          Length = 437

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/437 (56%), Positives = 328/437 (75%), Gaps = 5/437 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLR+E+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLREEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI + R+  R+EV+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVENAITMTRDHMREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A   AEER+++A+ G  A   TRE+FRKKL+ GE+ D  I++EVADTS+ +S F+IPG 
Sbjct: 122 NAHQAAEERVIEAIAGSDAREATREMFRKKLKAGELDDTVIELEVADTSNPMSMFEIPGQ 181

Query: 185 ASV----GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             +    G ++L ELF K    GR  + +++V + Y  L+ +E+D+L+D + V+R ++  
Sbjct: 182 PGMNPMGGGMDLVELFGKAF-GGRTVRKKLTVAQSYEVLISEEADKLLDDEAVNRSAVTA 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIA
Sbjct: 241 VEQNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV L+ L + DF  ILT+T++ L LQY  LM TE + +
Sbjct: 301 SGAFHIAKPSDLLPELQGRLPIRVELRPLTEQDFVRILTETDNALTLQYTALMGTESVTV 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F ED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     + +DAE+V 
Sbjct: 361 TFAEDGIAALARIAAEVNQSVENIGARRLYTVMERVFEELSFAAPDRSGDEITVDAEFVE 420

Query: 421 LHIGDFPSETDMYHFIL 437
            ++G    +TD+  ++L
Sbjct: 421 ANLGALTRDTDLSRYVL 437


>gi|261346864|ref|ZP_05974508.1| ATP-dependent protease HslVU, ATPase subunit [Providencia
           rustigianii DSM 4541]
 gi|282565044|gb|EFB70579.1| ATP-dependent protease HslVU, ATPase subunit [Providencia
           rustigianii DSM 4541]
          Length = 444

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 303/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+                S  R+ FRKKLR+G++ DKEI+IEV+    
Sbjct: 123 AEEMAEERILDVLIPPAKNNWGQAEPVDEPSPARQAFRKKLREGQLDDKEIEIEVSAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  +M +++ +  L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LAGQKQKPRKMKIKEAFKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVF+DEFDKI  R    +G  VSREGVQRDLLPL+EG ++STK+G + T
Sbjct: 241 EQAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF VS P+DL+PE+QGR P+RV L+ L   DF  ILT+  S+L  QYK LM
Sbjct: 301 DHILFIASGAFQVSSPSDLIPELQGRLPIRVELQPLTTEDFERILTEPNSSLTEQYKALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ +DFT D I  +A+ A  +N +  +IGARRL TV+ER++EDISF AS+ + +++ 
Sbjct: 361 ATEGVNIDFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASEREGQSIQ 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+AEYV  H+ +  ++ D+  FIL
Sbjct: 421 INAEYVSQHLDELVADEDLSRFIL 444


>gi|319785877|ref|YP_004145352.1| heat shock protein HslVU, ATPase HslU [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464389|gb|ADV26121.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 454

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/451 (51%), Positives = 319/451 (70%), Gaps = 19/451 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTG
Sbjct: 6   SSTMTPREIVQELDRHIVGQQAAKRAVAIALRNRWRRMQLDPELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  + +VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKMYREQAKVKVR 125

Query: 124 EQASINAEERILDALVGKTA----------------TSNTREVFRKKLRDGEISDKEIDI 167
            QA   AEERILDAL+ + A                  +TR  FR+ LRDGE+ D+EI++
Sbjct: 126 LQAEERAEERILDALLPRRAVPGFGNGTAEVQVSGPEDSTRAKFRRMLRDGELDDREIEL 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+A T + +     PG   +G   L ++F+  +G G+  K  ++++   P L+ +E+ RL
Sbjct: 186 ELAATGAGVDIMTPPGMEEMGQ-QLRQMFAS-LGGGKTHKRSLAIRAARPLLVEEEAARL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVST 286
           ++ D V   +I+  E +GIVF+DE DK+  R     G  VSREGVQRDLLPLVEGS+VST
Sbjct: 244 VNEDDVRAAAIEACEQHGIVFIDEIDKVAKRGENVGGGDVSREGVQRDLLPLVEGSNVST 303

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++ L 
Sbjct: 304 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALSKEDFVRILTEPKAALT 363

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY EL+ TEG+ L+FT D+++ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D
Sbjct: 364 RQYVELLATEGVGLEFTTDAVERLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPD 423

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++V ID  YV  H+G+   + D+  +IL
Sbjct: 424 RDGQSVTIDRAYVDQHLGELVQDPDLSRYIL 454


>gi|85711522|ref|ZP_01042580.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
 gi|85694674|gb|EAQ32614.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
          Length = 447

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/447 (51%), Positives = 313/447 (70%), Gaps = 17/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV EL+R+IIGQ  AKRAVA+ALRNRWRR QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDDLRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+   RE    +VR +
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQKREEMMQKVRYR 122

Query: 126 ASINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIEVA 170
           A   AE+RILD L+    TS               ++R+VFRKKLR+G + DKEI+I++A
Sbjct: 123 AEEAAEDRILDVLLPPARTSGGWGAEEDKGNDEQRHSRQVFRKKLREGSLDDKEIEIDLA 182

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG   +    L  +F   MG+ + KK ++ ++  + +L+ +E+ +L++ 
Sbjct: 183 MPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGNDKTKKRKIKIKDAFKQLIDEEAAKLLNP 240

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D V   +I+ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG++V+TK+G 
Sbjct: 241 DEVKEAAIESVEQNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVNTKHGM 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK
Sbjct: 301 IRTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELDALTSGDFVRILTEPNASLTTQYK 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ + FT+D I  +A++A ++N T  +IGARRL TV+ER++E+ISF+A+D   +
Sbjct: 361 ALLNTEGVEIGFTDDGIQRIAEIAFHVNETTENIGARRLHTVLERLMEEISFNATDHSGE 420

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ +DA YV  HIG+   + D+  FIL
Sbjct: 421 SISVDASYVDKHIGELSQDEDLSRFIL 447


>gi|226946555|ref|YP_002801628.1| ATP-dependent protease ATP-binding subunit HslU [Azotobacter
           vinelandii DJ]
 gi|259491368|sp|C1DHS0|HSLU_AZOVD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226721482|gb|ACO80653.1| heat shock protein HslU [Azotobacter vinelandii DJ]
          Length = 446

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/448 (52%), Positives = 316/448 (70%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+I+GQ+DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIVGQEDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMMREQEIQRVRH 120

Query: 125 QASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+                SNTR++FRK+LR+G++ DKEIDIE+ +T 
Sbjct: 121 RAEDAAEDRILDALLPPARQGFGDEPIAREDSNTRQLFRKRLREGQLDDKEIDIEITETP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           S +     PG   +    L  LFS  MG GRKK  ++ V+     +  +E+ RL++ + +
Sbjct: 181 SGVEIMAPPGMEEM-TSQLQNLFSS-MGKGRKKTHKLKVKDALKLVRDEEAARLVNEEEL 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 239 KARALESVEQNGIVFIDEIDKVAKRANVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L   DF  ILT+  ++L  QY+EL+
Sbjct: 299 DHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALTPEDFERILTEPHASLTEQYRELL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ + F  D I  +A++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 359 KTEGLNIQFAADGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAADHSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +VIDA YV  H+G+   + D+  +IL
Sbjct: 419 QPIVIDAAYVNNHLGELAQDEDLSRYIL 446


>gi|310766031|gb|ADP10981.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia sp.
           Ejp617]
          Length = 443

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELNRFIIGQNGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEER+LD L+     +             R+ FRKKLR+G++ DKEI+I++A  S  
Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F  + G  ++K  ++++++    L+ +E+ +L++ + + +
Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNI-GGQQQKPRKLTIKEAMKLLVEEEAAKLVNPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE +GIVF+DE DK+  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDH
Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+ P+DL+PE+QGR P+RV L++L  +DF  ILT+  +++ +QYK LM T
Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D +  +A  A  +N T  +IGARRL TV+ER++E+IS+ ASDL  +++ ID
Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+ +  ++ D+  FIL
Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443


>gi|119474655|ref|ZP_01615008.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119450858|gb|EAW32091.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 438

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/438 (52%), Positives = 311/438 (71%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELDRHIIGQERAKRAVAIALRNRWRRMQLDEELRTEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEIEKVKFR 122

Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AEERILD L+           S TR++FRKKLR+GE+ DKEI+IE++ T   +   
Sbjct: 123 AEDAAEERILDVLLPKARGDEDDKESTTRQLFRKKLREGELDDKEIEIEISATPVGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG        L  +FS  MGSG+KK  +M+V     ++  +E+ +L++ D +   +++
Sbjct: 183 APPGM-EDMTNQLQSMFSN-MGSGKKKTGKMTVAAALKKIQEEEAGKLVNEDELKAQAVE 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVFLDE DK+  R  G G  VSREGVQRDLLPL+EG +VSTK+G I TDHILFI
Sbjct: 241 AAEQTGIVFLDELDKVAKRSEGAGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY+ L++TEG+ 
Sbjct: 301 ASGAFHLAKPSDLIPELQGRLPIRVELEALSPGDFQRILTEPKASLTEQYQALLQTEGMS 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           + FT+D I  +A+ A  +N    +IGARRL TVMER+L++ SF A+D     + ID  YV
Sbjct: 361 ITFTDDGIKRIAETAWEVNERTENIGARRLHTVMERLLDEASFEATDKSGTELSIDESYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +G+   + D+  FIL
Sbjct: 421 NDKLGELAKDEDLSRFIL 438


>gi|330827798|ref|YP_004390750.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565]
 gi|328802934|gb|AEB48133.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565]
          Length = 442

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/442 (52%), Positives = 312/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLNEEMRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+  ++++ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYR 122

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               SNTR++FRKKLR+G++ DKEI++E++ +   
Sbjct: 123 AEEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + +
Sbjct: 183 VEIMTPPGMEEMA-NQLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 KAIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF +++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 301 ILFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDIS+ AS+   +T VID
Sbjct: 361 EGVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  H+G    + D+  FIL
Sbjct: 421 TDYVNAHLGALVEDEDLSRFIL 442


>gi|92112732|ref|YP_572660.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|123387605|sp|Q1QZZ7|HSLU_CHRSD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91795822|gb|ABE57961.1| heat shock protein HslVU, ATPase subunit HslU [Chromohalobacter
           salexigens DSM 3043]
          Length = 441

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV  LD+YIIGQQ+AKR+VAIALRNRWRR QL   LR E++PKNIL++GPTGV
Sbjct: 2   TQMTPREIVHALDQYIIGQQEAKRSVAIALRNRWRRMQLDDSLRGEVVPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +VRE  ++EV  
Sbjct: 62  GKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEMAMKMVREQAKEEVAH 121

Query: 125 QASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +A    EERILDAL+ +            S+TR+ FRKKLR+G++ DKEIDIE+      
Sbjct: 122 KAEDATEERILDALLPRPRGSEYDHARDESSTRQTFRKKLREGQLDDKEIDIEITPQGGG 181

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             +   P G       L  +FS  MG  + +  R++V++    L  +E+ +L++ + +  
Sbjct: 182 F-DISAPPGMEEMTSQLQSMFSN-MGKQKSETRRVTVEEARRLLHDEEAAKLVNEEQIKH 239

Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE  GIVFLDE DK+  R DSG+G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 240 RAIEAVEQNGIVFLDEIDKVAKRGDSGSGGDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 299

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  + L  QY+ L+ 
Sbjct: 300 HILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPSAALTKQYQALLA 359

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           T+G+ ++FT++ I  +A++A  +N    +IGARRL TVMER+LE+ SF   D+    + I
Sbjct: 360 TDGLEVNFTDEGIARIAEIAWQVNDGTENIGARRLHTVMERLLEEPSFQGGDMA-SPLTI 418

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+  ++ D+  +IL
Sbjct: 419 DAAYVDEQLGELATDEDLSRYIL 441


>gi|145297300|ref|YP_001140141.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|166221458|sp|A4SHM1|HSLU_AERS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|142850072|gb|ABO88393.1| ATP-dependent protease HslVU, ATPase subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 442

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/442 (53%), Positives = 313/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLGEEMRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VRE+  ++++ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKLVRETEMEKMKYR 122

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               SNTR++FRKKLR+G++ DKEI++E++ +   
Sbjct: 123 AEEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + +
Sbjct: 183 VEIMTPPGMEEMA-NQLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 KAIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM T
Sbjct: 301 ILFVASGAFQVARPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDISF AS+   +T VID
Sbjct: 361 EGVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISFDASEKSGETFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  H+G    + D+  FIL
Sbjct: 421 TDYVNAHLGKLIEDEDLSRFIL 442


>gi|90408769|ref|ZP_01216914.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
 gi|90310113|gb|EAS38253.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
          Length = 446

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/445 (49%), Positives = 304/445 (68%), Gaps = 14/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++I +ELDR+IIGQ  AKRAVAIALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKQITAELDRHIIGQNKAKRAVAIALRNRWRRMQLDEEIRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE    +V  +
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVESIIRDLVEVSIKLTREEDMKKVTTK 122

Query: 126 ASINAEERILDALVGKTATS-------------NTREVFRKKLRDGEISDKEIDIEVADT 172
           A+  AE++ILD L+    TS               R+ FRKKLR+G++ DKEI++ V   
Sbjct: 123 AADIAEDKILDILIPPAKTSGEWDTSNDVVEDGAARQSFRKKLREGKLDDKEIEVSVPSP 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F  + G    KK +M ++     ++  ES  LI+ D 
Sbjct: 183 QIGVEIMAPPGMEEM-TNQLQGMFQNLAGKNENKKRKMKIKDALKSIIEIESANLINQDD 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I   EN+GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTKYG + 
Sbjct: 242 IKERAIFAAENHGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKYGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDH+LFIASGAF V+RP+DL+PE+QGR P+RV L++L + D   ILT+ +++L  QY+ L
Sbjct: 302 TDHMLFIASGAFQVARPSDLIPELQGRLPIRVELEALTEEDLSRILTEPKASLSEQYQAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TEG+ ++FT+D ID +A  A ++N T  +IGARRL T+MER+++++S+ ASD +  +V
Sbjct: 362 LATEGVSIEFTQDGIDKIAHSAWHVNETTENIGARRLHTLMERIMDELSYEASDRKGDSV 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +IDA+YV   + D     D+  FIL
Sbjct: 422 IIDAQYVANRLDDVIKNEDLSRFIL 446


>gi|90580884|ref|ZP_01236686.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
 gi|90437955|gb|EAS63144.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
          Length = 443

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              A S+TR+ FRKKLR+G++ DKEI++++A    
Sbjct: 123 AEELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK +M ++        +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGNTTKKRKMKIKDALKAATEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM 
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FT D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +  +I
Sbjct: 361 TESVEIEFTADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFMI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+F  + D+  FIL
Sbjct: 421 DAAYVSERLGEFVQDEDLSRFIL 443


>gi|89075184|ref|ZP_01161615.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
 gi|89049006|gb|EAR54573.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
          Length = 443

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              A S+TR+ FRKKLR+G++ DKEI++++A    
Sbjct: 123 AEELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +     KK +M ++        +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGNTTKKRKMKIKDALKAATEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM 
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FT D ID+LAD A  +N    +IGARRL TVMER++E+IS+ AS+   +  +I
Sbjct: 361 TESVDIEFTTDGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKAGEKFMI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+F  + D+  FIL
Sbjct: 421 DAAYVSERLGEFVQDEDLSRFIL 443


>gi|260913429|ref|ZP_05919908.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325]
 gi|260632503|gb|EEX50675.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325]
          Length = 443

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ I+RDL D A+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIVRDLTDSAMKLVRQTEIEKNRFR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILDAL+                S+TR+VFRKKLR+G++ DKEI+++VA  S 
Sbjct: 123 AEEAAEDRILDALLPPAKNQWGQVEASDNNSSTRQVFRKKLREGQLDDKEIEVDVAGVSM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEG++VSTK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FTE +I  +A+ A  +N    +IGARRL TVMER+++ ISF+AS++  + V I
Sbjct: 361 TEGVNIAFTEGAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASEMNGQIVTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   +GD     D+  FIL
Sbjct: 421 DDAYVIEALGDVVENEDLSRFIL 443


>gi|294675591|ref|YP_003576206.1| ATP-dependent hsl protease ATP-binding subunit HslU [Rhodobacter
           capsulatus SB 1003]
 gi|294474411|gb|ADE83799.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter
           capsulatus SB 1003]
          Length = 433

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/433 (55%), Positives = 317/433 (73%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRRQ+L  ++R+E+ PKNIL++GPTGV
Sbjct: 2   TSLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRQRLSPEMREEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVDVA+   RE  R+EV+ 
Sbjct: 62  GKTEISRRLAKLAKAPFLKVEATKFTEVGYVGRDVEQIIRDLVDVAMVETRERMREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE+R+++ L G  A   TRE+FR+KLRDGE+ DK+I+IEVA+T+S         G
Sbjct: 122 RAHKAAEDRVIEVLAGTDAREQTREMFRRKLRDGELDDKQIEIEVAETASAPQMMMGNPG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             + +  L +LF K  G  RK + +MSV + Y  L+ +E+D+L+D + V   +++ V   
Sbjct: 182 MELQMQGLQDLF-KAFGGARKTRRKMSVAESYEVLISEEADKLLDDEAVKTAALEAVSQS 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 241 GIVFLDEIDKVAARAETRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L+ L + DF  ILT+T++ L  QY  LM TE + + FT 
Sbjct: 301 HIAKPSDLLPELQGRLPIRVELRPLTEEDFVRILTETDNALTRQYTALMATEEVTVSFTP 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           + I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     V +DA +V  H+G
Sbjct: 361 EGIAALARIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGDQVTVDAAFVERHLG 420

Query: 425 DFPSETDMYHFIL 437
                 D+  ++L
Sbjct: 421 SLAQSADLSRYVL 433


>gi|221133925|ref|ZP_03560230.1| ATP-dependent protease ATP-binding subunit [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/441 (49%), Positives = 302/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD +IIGQQDAKRAV+IALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDSHIIGQQDAKRAVSIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKEQATAKVKFRA 123

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+            T   +TR+ FRKKLR+G++ DKEI+I++A     +
Sbjct: 124 EEAAEERILDVLIPPPKDIFGDNQETDNKSTRQAFRKKLREGKLDDKEIEIDIAMPQVGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG        L  +F   +   + KK  + ++  +  L+ +E+ +L++ + + ++
Sbjct: 184 EIMAPPGM-EDMTNQLQGMFQN-LSGNQSKKKTLPIKDAFKYLVEEEAAKLVNQEDLKQE 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ +E  GIVF+DE DKI  R+  +   VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF +S+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+ TE
Sbjct: 302 LFITSGAFQMSKPSDLIPELQGRLPIRVELQALEVKDFVRILTEPHASLTEQYVALLGTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TVMER++EDIS+ AS+ Q + + +D 
Sbjct: 362 GVSVNFTQDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKQGEAIEVDK 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV  H+       D+  +IL
Sbjct: 422 DYVNRHLELLVDNEDLSRYIL 442


>gi|117619601|ref|YP_858539.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|166221457|sp|A0KQI8|HSLU_AERHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|117561008|gb|ABK37956.1| heat shock protein HslVU, ATPase subunit HslU [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 442

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/442 (52%), Positives = 312/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLDEEMRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+  ++++ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYR 122

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               SNTR++FRKKLR+G++ DKEI++E+A +   
Sbjct: 123 AEEAAEERILDALLPNPRNSWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELAASPMG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  LF   +G  +KKK ++ V++    L+ +E+ RL++ + + +
Sbjct: 183 VEIMTPPGMEEMA-NQLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEG +V+TK+G + TDH
Sbjct: 241 KAIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+ASGAF +++P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM T
Sbjct: 301 ILFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYQALMAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D I  LA+ A  +N    +IGARRL TVMER++EDIS+ AS+   +T VID
Sbjct: 361 EGVKIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  H+G    + D+  FIL
Sbjct: 421 TDYVNAHLGKLIEDEDLSRFIL 442


>gi|260429465|ref|ZP_05783442.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp.
           SE45]
 gi|260420088|gb|EEX13341.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp.
           SE45]
          Length = 435

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/435 (55%), Positives = 336/435 (77%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIAMTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A   AE+R+++A+ GK A  +TRE+FRKKLR+GE+   EI+++VA+T+S     ++PG 
Sbjct: 122 AAHKAAEDRVIEAIAGKDARDSTREMFRKKLRNGELDATEIELDVAETASPFPMMELPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G S+G++NLS++F K    GR  + ++SV + Y  L+++E+D+L+D + V + +++ VE
Sbjct: 182 PGQSMGMMNLSDIFGKAF-GGRTTRKKLSVGESYEVLIQEEADKLLDDEVVKKAALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE +I++F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMATEEVIVEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE+ I ALA +A  +N +V +IGARRL TVMERV E++SF+A D   +++ +D  +V  +
Sbjct: 361 TEEGIHALAKIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGESITVDGSFVETY 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELTRSADLSRYVL 435


>gi|255261958|ref|ZP_05341300.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp.
           R2A62]
 gi|255104293|gb|EET46967.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp.
           R2A62]
          Length = 435

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/435 (55%), Positives = 325/435 (74%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI   RE+ RD+V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDAAIIQTRENMRDDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AE+R++ A+ G+ A  +T+ +FRKKL+ GE+    I++E+ DTS+ +   +IPG 
Sbjct: 122 KAHKAAEDRVVAAIAGEDARESTQNMFRKKLKTGELDKTIIELELTDTSNPMKGMEIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G   G++N+ ++F K    GR  K RM+V + Y  L+ +E+D+L+D +TV R +++ VE
Sbjct: 182 PGQMGGMMNIGDIFGKAF-GGRTVKKRMTVSESYDVLISEEADKLLDDETVTRAALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G+I TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARADARGGDVSREGVQRDLLPLIEGTTVSTKHGAIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L +SDF  ILT+T++ L  QY  LM TE + + F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTESDFIRILTETDNALTRQYTALMGTEDVTVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED I ALA +A  +N +V +IGARRL TV+ERV E++SFSA D     V ID  +V  H
Sbjct: 361 KEDGIAALARIAAEVNESVENIGARRLYTVLERVFEELSFSAPDRSGDEVTIDHAFVEEH 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELAKSADLSRYVL 435


>gi|119385514|ref|YP_916570.1| ATP-dependent protease ATP-binding subunit [Paracoccus
           denitrificans PD1222]
 gi|166221593|sp|A1B5T0|HSLU_PARDP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119375281|gb|ABL70874.1| heat shock protein HslVU, ATPase subunit HslU [Paracoccus
           denitrificans PD1222]
          Length = 435

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/433 (55%), Positives = 322/433 (74%), Gaps = 1/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDL D A+   RE  RDEV+ +
Sbjct: 63  KTEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMRDEVKAR 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A  +AE+R++ AL G+ A   TRE+FR KL+ GE+ DK I++E+ D SS     +IPG  
Sbjct: 123 AHKSAEDRVVAALAGEGAREQTREMFRDKLKRGELDDKVIELELQDNSSPFGMMEIPGQP 182

Query: 186 SVGILNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              +  + +L   +    GR+ + ++SV + Y  L+ +E+D+L+D + V   +++ V+  
Sbjct: 183 GQPMGGMMDLSGLMKAFGGRRVRRKLSVAESYDLLIAEEADKLLDDEAVKAAALEAVQEN 242

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 243 GIVFIDEIDKVAARTDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASGAF 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TEG+ + F +
Sbjct: 303 HIAKPSDLLPELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQ 362

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A  +N +V +IGARRL TV+ERV E++SFSA D   +TVV+DA +V  H+G
Sbjct: 363 DGIRALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSGETVVVDAAFVEKHLG 422

Query: 425 DFPSETDMYHFIL 437
           D    TD+  ++L
Sbjct: 423 DLSRSTDLSRYVL 435


>gi|188590938|ref|YP_001795538.1| ATP-dependent protease ATP-binding subunit hslu [Cupriavidus
           taiwanensis LMG 19424]
 gi|238692923|sp|B2AGB7|HSLU_CUPTR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170937832|emb|CAP62816.1| ATPase component of the HslUV protease, molecular chaperone
           [Cupriavidus taiwanensis LMG 19424]
          Length = 443

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/445 (51%), Positives = 312/445 (70%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SNTR+VFRKKLR+G++ DK+I++EV+  
Sbjct: 121 RTKAEDAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEVSAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG        +  +F+  +G G+K + +M V++ +  L+ +E+ +L++ + 
Sbjct: 181 MPSMDIMGPPGM-EDMTEQIRTMFAG-LGQGKKARRKMKVKEAFKLLIDEEAAKLVNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG I 
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKIASRSDIGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TE + L F  D I  LA++A ++N  V +IGARRL TVMER+LED+SF AS    +TV
Sbjct: 359 LNTEEVNLVFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   +GD     D+  ++L
Sbjct: 419 TIDAAYVEERLGDLAGNEDLSRYVL 443


>gi|85060147|ref|YP_455849.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|123766389|sp|Q2NQY1|HSLU_SODGM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|84780667|dbj|BAE75444.1| heat shock protein [Sodalis glossinidius str. 'morsitans']
          Length = 443

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 303/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YI+GQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDGYIVGQHNAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRFR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+                S+ R+ FRKKLR+G++ +KEI+I +A    
Sbjct: 123 AEELAEERVLDVLIPPAKNNWGQPEESGEPSSARQNFRKKLREGQLDEKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFKN-LAGQKQKPRKIKIKEAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I+ VE +GIVF+DE DKI  RD  +G+ VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 EKAIEAVEQHGIVFIDEIDKICKRDEVSGLDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPSASLTTQYIALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FTED I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS+   KT+ I
Sbjct: 361 TEGVSITFTEDGIKRIAEAAWQVNECTENIGARRLHTVLERLMEDISYDASEWNGKTISI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+ +  S+ D+  FIL
Sbjct: 421 DADYVHGHLDELVSDEDLSRFIL 443


>gi|114800330|ref|YP_760732.1| ATP-dependent protease ATP-binding subunit HslU [Hyphomonas
           neptunium ATCC 15444]
 gi|123027947|sp|Q0C0L1|HSLU_HYPNA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114740504|gb|ABI78629.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomonas neptunium
           ATCC 15444]
          Length = 434

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/432 (56%), Positives = 326/432 (75%), Gaps = 2/432 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELDR+I+GQ  AKRAVAIALRNRWRR+Q P +LR E+ PKNIL++GPTGVGK
Sbjct: 4   LTPREIVAELDRHIVGQNAAKRAVAIALRNRWRRKQAPENLRGEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +SRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ ++RE +R  V + A
Sbjct: 64  TEVSRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAVGMIREQKRAGVDKAA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GA 185
              AEER+LDALVG  A S+TREVFR+KLR GE+ DKE+D++ ADT++ +   D+PG G 
Sbjct: 124 RDKAEERLLDALVGAEAQSSTREVFRRKLRAGELDDKEVDLDFADTNNPMQMLDLPGQGG 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S+ ++NL ++  K M  GR +++R +V++    L+ +E+D+L+D + + R++I  VE  G
Sbjct: 184 SMSMINLGDMLGKAM-GGRTRRVRTTVREAAKPLVTEEADKLVDEEQIVREAIMAVEEDG 242

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DKI AR    G  VSREGVQRDLLPL+EG++VSTK G++ TDHILFIASGAFH
Sbjct: 243 IVFLDEIDKIAARKDRGGADVSREGVQRDLLPLIEGTTVSTKRGAVKTDHILFIASGAFH 302

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV L+ L + D R IL + +++LI QY+ LM  E + L F + 
Sbjct: 303 VAKPSDLLPELQGRLPIRVELEPLTRDDLRRILVEPQASLIRQYEALMAAENVTLTFEDG 362

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +ID +AD+A  +N ++ +IGARRLQT++ER+L+DISF A D   +T  I A YV   +G 
Sbjct: 363 AIDRIADMAEAVNKSIENIGARRLQTILERLLDDISFDAPDKGGETFTITASYVDEKVGS 422

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 423 LAGNADLSKFIL 434


>gi|94676912|ref|YP_588629.1| ATP-dependent protease ATP-binding subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|122988121|sp|Q1LTT5|HSLU_BAUCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|94220062|gb|ABF14221.1| heat shock protein HslVU, ATPase subunit HslU [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 446

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/445 (50%), Positives = 305/445 (68%), Gaps = 16/445 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV+ELD YIIGQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPSEIVNELDDYIIGQHNAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSMEKNRFRA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AEERILD L+ +              +  S+TR+ FRKKLR+G++++KEI+I +A T
Sbjct: 124 EERAEERILDVLIPQPTPNNWDKIEENNSSEPSSTRQHFRKKLREGQLNEKEIEINLAAT 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F   +   ++K  +M +++    L+ +E+ +L++ + 
Sbjct: 184 PIGVEIMAPPGMEEM-TNQLQSMFKN-LAGQKQKSRKMKIKEAMKLLIEEEAAKLVNQEK 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I+ VE  GIVF+DE DKI  R   +G  VS EGVQRDLLPLVEG +VSTK+G + 
Sbjct: 242 IKEKAIEAVEQNGIVFIDEIDKICKRGDVSGPDVSSEGVQRDLLPLVEGCTVSTKHGMVK 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TD+ILFIASGAF V+ P+DL+PE+QGR P+RV L++L   DF+LILT+  ++L +QY  L
Sbjct: 302 TDYILFIASGAFQVASPSDLIPELQGRLPIRVELEALTPKDFQLILTEPNASLTMQYIAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           M TEG+ + FTED I  +A+ A  +N    +IGARRL T++E ++EDIS+ AS+   KT+
Sbjct: 362 MATEGVSISFTEDGIKRIAETAWQVNERTENIGARRLHTILELLMEDISYDASEWHGKTI 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA+YVR H+ D  S+ D   FIL
Sbjct: 422 SIDADYVRSHLDDLVSDEDFSRFIL 446


>gi|209696145|ref|YP_002264075.1| ATP-dependent protease ATP-binding subunit HslU [Aliivibrio
           salmonicida LFI1238]
 gi|238065793|sp|B6EML9|HSLU_ALISL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|208010098|emb|CAQ80423.1| ATP-dependent hsl protease ATP-binding subunit HslU (heat shock
           protein HslU) [Aliivibrio salmonicida LFI1238]
          Length = 444

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/443 (48%), Positives = 296/443 (66%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD +IIGQ  AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLQPELRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMTHQQAVEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+                S TR+ FRKKLR+G++ DKEID++VA    
Sbjct: 123 AEEQAEDRILDILLPPARDAWGKNEEGDNDSGTRQSFRKKLREGKLDDKEIDVDVAAPQV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G    KK +M ++     L  +E  +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQNLSGGETTKKRKMKIKDALKALAEEEGAKLVNPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN+GIVF+DE DKI    +     VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 EQAIFNVENHGIVFIDEIDKICKGSNSQSGDVSREGVQRDLLPLVEGSTVSTKHGMVRTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           H+LFI SGAF +++P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L  QY  L+ 
Sbjct: 302 HMLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++E+IS+ AS+    ++ +
Sbjct: 362 TENVNIEFTEDGISRIAESAFRVNETTENIGARRLHTVMERLMEEISYDASEKGGDSLTV 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   +G+     D+  FIL
Sbjct: 422 DDAYVTSRLGELIENEDLSRFIL 444


>gi|15603613|ref|NP_246687.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431569|sp|P57968|HSLU_PASMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|12722164|gb|AAK03832.1| HslU [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 443

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILDAL+                  TR+VFRKKLR+G++ DKEIDI+VA  S 
Sbjct: 123 AEEAAEDRILDALLPPAKNQWGQVETTDSNNTTRQVFRKKLREGQLDDKEIDIDVAAPSM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEDLK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEG++VSTK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT +SI  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+Q + V I
Sbjct: 361 TEGVNIEFTGESIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQGQVVRI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   +GD     D+  FIL
Sbjct: 421 DEAYVMDALGDVVENEDLSRFIL 443


>gi|163797095|ref|ZP_02191050.1| Heat shock protein HslU [alpha proteobacterium BAL199]
 gi|159177611|gb|EDP62164.1| Heat shock protein HslU [alpha proteobacterium BAL199]
          Length = 437

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 251/435 (57%), Positives = 337/435 (77%), Gaps = 5/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRR+QLP  LR E++PKNIL++GPTGVGK
Sbjct: 4   FSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRRQLPEALRQEILPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+VE I+RDLV+VAI++ RE  R EV  +A
Sbjct: 64  TEIARRLARLAEAPFIKIEATKFTEVGYVGRDVESIVRDLVEVAISMTRERMRREVHAKA 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS----NFDIP 182
            + AEER++DALVG +A++ TR+ FRK LR+G ++++EI+IE++                
Sbjct: 124 ELAAEERVIDALVGTSASAETRQKFRKMLREGALAEREIEIELSGGGGPSGMPSFEIPGM 183

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA +G+++LSE+  K    G+K+K RMSV   Y  L+++E+D+L+D + V R++I+ VE
Sbjct: 184 PGAQMGMVDLSEMLGKAF-GGQKRKRRMSVSDSYDLLVKEEADKLLDQELVTRNAIETVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   +   G  VSREGVQRDLLPL+EG++V+TK+G + TD +LFIASG
Sbjct: 243 QNGIVFLDEIDKIARSEQRGGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDFVLFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH ++P+DLLPE+QGR P+RV L++L ++DFR ILT+ E++L+ QY  L+ TEG+ L+F
Sbjct: 303 AFHTAKPSDLLPELQGRLPIRVELQALTRNDFRRILTEPEASLVTQYVALLGTEGVTLEF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED+IDALAD+AV +N TV +IGARRL TV+E++LE+ISF+ASD   +++VIDAE VR  
Sbjct: 363 AEDAIDALADLAVEINRTVENIGARRLHTVLEKLLEEISFTASDRTGESIVIDAELVRTR 422

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  FIL
Sbjct: 423 VGELAKNADLSRFIL 437


>gi|307546359|ref|YP_003898838.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
 gi|307218383|emb|CBV43653.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
          Length = 440

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 236/442 (53%), Positives = 310/442 (70%), Gaps = 12/442 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV  LD+YIIGQQDAKRAVA ALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 2   TQMTPREIVHALDQYIIGQQDAKRAVASALRNRWRRMQLDEELRQEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L+GAPFIK+E TKFTE+GYVGR+VE IIRDL + AI +VRE  +DEVR 
Sbjct: 62  GKTEIARRLAKLSGAPFIKIEATKFTEVGYVGRDVESIIRDLTEAAIKLVREQAKDEVRH 121

Query: 125 QASINAEERILDALVGKTA--------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +A   AE+RILDAL+             + TR+ FRKKLR+G++ DKEIDIEV   S  +
Sbjct: 122 RAEDAAEDRILDALLPPPRGQEGQPRTDNATRQAFRKKLREGQLDDKEIDIEVTPQSQGV 181

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  LFS  MG  + +  R++V+  +  L  +E+ +L++ D + + 
Sbjct: 182 DIMTPPGMEEM-TSQLQNLFSS-MGKQKTETRRVAVKDAFALLRDEEAAKLVNEDDIKQR 239

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+ VE +GIVFLDE DK+      +  G VSREGVQRDLLPL+EGSSVSTK+G + TDH
Sbjct: 240 AIEAVEQHGIVFLDELDKVAKGSGQSSGGEVSREGVQRDLLPLIEGSSVSTKHGMVKTDH 299

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGR P+RV L +L   DF+ ILT+  + L  QY  L+ T
Sbjct: 300 ILFIASGAFHLSRPSDLIPELQGRLPIRVELNALTPDDFKRILTEPSAALTRQYTALLAT 359

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++FT+D I+ +A++A  +N    +IGARRL TVMER+LED SF  SDL  +T+ ID
Sbjct: 360 EDLKVEFTDDGIERIAEIAWKVNEGTENIGARRLHTVMERLLEDASFKGSDL-GETLTID 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+   + D+  +IL
Sbjct: 419 AAYVDSQLGELAMDEDLSRYIL 440


>gi|194367243|ref|YP_002029853.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas
           maltophilia R551-3]
 gi|194350047|gb|ACF53170.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas
           maltophilia R551-3]
          Length = 457

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/449 (50%), Positives = 311/449 (69%), Gaps = 20/449 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVGK
Sbjct: 11  MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR QA
Sbjct: 71  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQA 130

Query: 127 SINAEERILDAL-----------------VGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL                       + TR  FRK LR+GE+ D+EI++++
Sbjct: 131 EERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDDREIELDL 190

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A   S   +   P G       L  +F+ + G  +  K  ++++   P L+ +E+ +L++
Sbjct: 191 AANVS--MDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLAIKAARPLLIEEEAGKLVN 248

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY 288
            D +   +I+  E +GIVF+DE DK+  R     G  VSREGVQRDLLPLVEGS+VSTKY
Sbjct: 249 EDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKY 308

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ L  Q
Sbjct: 309 GTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALTKQ 368

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TEG+ + FT D+ID LA++A  +N    +IGARRL TV+ER+L+ +S+ A D  
Sbjct: 369 YEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRD 428

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +T+VID+ YV  H+G+   + D+  +IL
Sbjct: 429 GETLVIDSAYVDTHLGELVQDPDLSRYIL 457


>gi|239994471|ref|ZP_04714995.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           ATCC 27126]
          Length = 442

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/442 (50%), Positives = 305/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+     +           TR+ FRKKLR G++ DKEI+I+VA     
Sbjct: 123 AEEAAEERILDVLLPPPEDAWGNKENVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +   +KKK ++ +++ +  L+ +E+ RL++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQN-LSGSQKKKKKLKIKEAFKLLIEEEAARLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R+  +   VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 241 KAIESVEQHGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LMKT
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTHQYIALMKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F +  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VID
Sbjct: 361 EGVDISFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+       D+  FIL
Sbjct: 421 ADYVNSHLETLVDNEDLSRFIL 442


>gi|90413625|ref|ZP_01221615.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
 gi|90325398|gb|EAS41887.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
          Length = 443

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 301/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +    +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+                S+TR+ FRKKLR+G++ DK+I++++A    
Sbjct: 123 AEELAEDRILDVLLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKDIEMDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        L  +F   +     KK +M ++        +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGM-EDMTNQLQGMFQN-LAGNTSKKRKMKIKDAIKAATEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK LM 
Sbjct: 301 HILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + +DF+ED I+ +AD A  +N    +IGARRL TVMER++E++SF A+D  ++ +VI
Sbjct: 361 TESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   +G+   + D+  FIL
Sbjct: 421 DEAYVNERLGELVEDEDLSRFIL 443


>gi|54307474|ref|YP_128494.1| ATP-dependent protease ATP-binding subunit HslU [Photobacterium
           profundum SS9]
 gi|62286820|sp|Q6LVI3|HSLU_PHOPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|46911894|emb|CAG18692.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Photobacterium profundum SS9]
          Length = 443

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 300/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +    +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+                S+TR+ FRKKLR+G++ DKEI++++A    
Sbjct: 123 AEELAEDRILDILLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKEIEMDIAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        L  +F   +     KK +M ++        +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGM-EDMTNQLQGMFQN-LAGNTSKKRKMKIKDAIKAATEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 EQAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF +S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L  QYK LM 
Sbjct: 301 HILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPKASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + +DF+ED I+ +AD A  +N    +IGARRL TVMER++E++SF A+D  ++ ++I
Sbjct: 361 TESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLII 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + +     D+  FIL
Sbjct: 421 DEAYVNERLDELVENEDLSRFIL 443


>gi|113866231|ref|YP_724720.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia eutropha
           H16]
 gi|123134530|sp|Q0KF69|HSLU_RALEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|113525007|emb|CAJ91352.1| ATP-dependent protease HslVU, ATP-binding subunit [Ralstonia
           eutropha H16]
          Length = 443

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 311/445 (69%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SNTR+VFRKKLR+G + DKEI++E++  
Sbjct: 121 RTKAEDAAEDRLLDVLLPPARDIGFSQPEEKDSNTRQVFRKKLREGSLDDKEIELELSAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG        +  +F+  +G G+K + +M V++ +  L+ +E+ +L++ + 
Sbjct: 181 MPSMDIMGPPGM-EDMTEQIRTMFAG-LGQGKKARRKMKVKEAFKLLIDEEAAKLVNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++VSTKYG I 
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKIASRSEIGGGEVSRQGVQRDLLPLVEGTTVSTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A+    +TV
Sbjct: 359 LSTESVDLVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I+A YV   +GD     D+  ++L
Sbjct: 419 TINAAYVDERLGDLAVNEDLSRYVL 443


>gi|84514931|ref|ZP_01002294.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
 gi|84511090|gb|EAQ07544.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
          Length = 432

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 250/433 (57%), Positives = 327/433 (75%), Gaps = 2/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++VR 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAILDTREHMREDVRT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEER++ A+ G  A   TRE+FR+KL+ GE+    I++E+ DT++ +  F+IPG 
Sbjct: 122 KAREAAEERVITAVAGTDAREGTREMFRRKLKSGELDSTVIELELTDTTNPMGGFEIPGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G++NL +LF K M  GR  K RM+V   Y  L+ DE+D+L+D +TV + +++ VE  
Sbjct: 182 PG-GMMNLGDLFGKAM-GGRTVKKRMTVADSYDALIADEADKLLDDETVTKAALEAVEQS 239

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGAF
Sbjct: 240 GIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGAF 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LM+TE + + FTE
Sbjct: 300 HVAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYSALMQTEQVTVTFTE 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D I ALA +A ++N  V +IGARRL TVMERV ED+SF+A D   + + +DA++V  H+G
Sbjct: 360 DGIKALAKIAADVNEAVENIGARRLYTVMERVFEDLSFNAPDRGGEEIAVDADFVEKHLG 419

Query: 425 DFPSETDMYHFIL 437
           +     D+  ++L
Sbjct: 420 ELSRSVDVSRYVL 432


>gi|294011680|ref|YP_003545140.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium
           japonicum UT26S]
 gi|292675010|dbj|BAI96528.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium
           japonicum UT26S]
          Length = 435

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/437 (54%), Positives = 325/437 (74%), Gaps = 2/437 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+  N +P+ IVS LD +IIGQ DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++G
Sbjct: 1   MKMNDNLTPKAIVSALDAHIIGQADAKRAVAVALRNRWRRQRLSPDLRDEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+
Sbjct: 61  PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            VRE AS  A  R+LDAL GK A+  TR  FR+++ + +++D E+++EVAD+ S      
Sbjct: 121 AVREAASEAAMARLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPSMPMEIP 180

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             GG  +G++NLS++ SK  G  +KK+ ++ V + + +L+ +E D+ +D D V R +I  
Sbjct: 181 GMGG-QIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAINS 239

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            E  GIVF+DE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIA
Sbjct: 240 AEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFIA 298

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TEG+ +
Sbjct: 299 SGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVTV 358

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           D T D I A+A +A  +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV 
Sbjct: 359 DLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYVE 418

Query: 421 LHIGDFPSETDMYHFIL 437
             +      TD+  ++L
Sbjct: 419 KQLSAVARNTDLSKYVL 435


>gi|254475576|ref|ZP_05088962.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11]
 gi|214029819|gb|EEB70654.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11]
          Length = 436

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/436 (55%), Positives = 331/436 (75%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIVQTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AE+R+L A+ G+ A   TRE+FRKKL+ GE+ D  I++++ DTS+ +        
Sbjct: 122 KARTAAEDRVLTAIAGEDARDATREMFRKKLKAGELDDTVIELDITDTSNPMGGMFEIPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G ++G++NL +LF K M  GR  + +M+V + Y  L+ +E+D+L+D +TV + +++ V
Sbjct: 182 QPGGNMGMMNLGDLFGKAM-GGRTTRKKMTVAQSYDVLIGEEADKLLDDETVTKAALESV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCARQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  L+ TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEDDFVRILTETDNALTLQYTALLGTEDVTVS 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D I +LA +A  +N TV +IGARRL TV+ERV E++SFSA D   + + +DA++VR 
Sbjct: 361 FTKDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRAGEEIKVDADFVRK 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+     D+  ++L
Sbjct: 421 NLGELTKSADVSRYVL 436


>gi|89067411|ref|ZP_01154924.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046980|gb|EAR53034.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
          Length = 433

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/433 (54%), Positives = 322/433 (74%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGPDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDTAIIDTREHMREDVKS 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEER++ A+ G+ A   T+E+FRKKL+ G++ D  I++EVADTS+          
Sbjct: 122 RAHAAAEERVIAAVAGEGAREGTKEMFRKKLKAGDLDDTMIELEVADTSNPFGMEIPGQP 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +  +NL ++F K  G    KK  M+V + Y  L+ DE+D+L+D + V + +++ VE  
Sbjct: 182 GMMPGMNLGDMFGKAFGQRTVKKR-MTVAESYETLIADEADKLLDDEIVKKAALEAVEQN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF
Sbjct: 241 GIVFLDEIDKVCRNSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY+ LM TE + + FT+
Sbjct: 301 HIAKPSDLLPELQGRLPIRVNLRALTEGDFVRILTETDNALTRQYEALMATETVAVSFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           + I ALA +A ++N +V +IGARRL TVMERV E++SF+A D   +TV +DA +V  H+G
Sbjct: 361 EGIAALAKIAADVNESVENIGARRLYTVMERVFEELSFTAPDRGGETVTVDAAFVEEHLG 420

Query: 425 DFPSETDMYHFIL 437
           +    TD+  ++L
Sbjct: 421 ELTRSTDLSRYVL 433


>gi|170718714|ref|YP_001783904.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus
           2336]
 gi|189043912|sp|B0US05|HSLU_HAES2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|168826843|gb|ACA32214.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus somnus
           2336]
          Length = 443

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+                 NTR++FRKKLR+G++ D+EI+I++A  + 
Sbjct: 123 AEEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE ++  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  + V+I
Sbjct: 361 TEGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVII 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   +GD     D+ HFIL
Sbjct: 421 DGDYVTGALGDVVENEDLSHFIL 443


>gi|261866862|ref|YP_003254784.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391045|ref|ZP_06635379.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261412194|gb|ACX81565.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290951579|gb|EFE01698.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ +AKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQSEAKRAVAIALRNRWRRMQLQEPMRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRVK 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+                +NTR++FRKKLR+GE+ DKE++I+VA    
Sbjct: 123 AEEAAEERILDALLPAAKNQWGEMENRDVQNNTRQIFRKKLREGELDDKEVEIDVAGVPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        L  +F   + SG+ KK +M ++     L+ DE+ +L++ + + 
Sbjct: 183 GVEIMAPPGM-EDMTSQLQSMFQN-LSSGQTKKRKMKIKDALKTLVDDEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  IL +  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAGDFERILAEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV I
Sbjct: 361 TEGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVSI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +GD     D+  FIL
Sbjct: 421 DAAYVSEALGDVIENEDLSRFIL 443


>gi|188575136|ref|YP_001912065.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188519588|gb|ACD57533.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 485

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/453 (50%), Positives = 323/453 (71%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 36  TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 95

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 96  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 155

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+ ILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 156 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 215

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 216 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 272

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+V
Sbjct: 273 LVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNV 332

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 333 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 392

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 393 LIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 452

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 453 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 485


>gi|17544761|ref|NP_518163.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum
           GMI1000]
 gi|21759167|sp|Q8Y3D8|HSLU_RALSO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|17427050|emb|CAD13570.1| probable atp-dependent hsl protease atp-binding subunit hslu
           protein [Ralstonia solanacearum GMI1000]
          Length = 443

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/445 (51%), Positives = 310/445 (69%), Gaps = 12/445 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MPETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + 
Sbjct: 181 MPGMDIMGPPGMEEM-TEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++VSTKYG I 
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKITSRSEHGGGEVSRQGVQRDLLPLVEGTTVSTKYGMIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+ L
Sbjct: 299 TDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           MKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +TV
Sbjct: 359 MKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGETV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA YV   + +     D+  ++L
Sbjct: 419 TIDAAYVDSRLNELAGSEDLSRYVL 443


>gi|254419306|ref|ZP_05033030.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp.
           BAL3]
 gi|196185483|gb|EDX80459.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp.
           BAL3]
          Length = 433

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 263/433 (60%), Positives = 340/433 (78%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + SPREIVSELDRYI+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLSPREIVSELDRYIVGQDDAKRAVAVALRNRWRRKRVPEDLRDEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR EVR 
Sbjct: 62  GKTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDRRRGEVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE+RILDALVG  A   TR+ FRKKLR G++ DKEI+I +ADT+S I   DIPGG
Sbjct: 122 RAEGAAEDRILDALVGPGAGQATRDSFRKKLRAGDLDDKEIEIALADTASPIQGLDIPGG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +VG+LNLSE+  K MG GR K ++++V+     L+ +E D+L+D D++ ++++ + EN 
Sbjct: 182 GAVGLLNLSEMLGK-MGGGRTKTVKLTVRDATAPLIAEEGDKLLDQDSLTKEALILAENE 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ AR   +G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF
Sbjct: 241 GIVFLDEIDKVAARQGASGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TE + L FT+
Sbjct: 301 HVAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEDVTLTFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+I+ALAD AV  NS V +IGARRLQTV+ERVLE+ SF ASDL  +TV  D   VR  + 
Sbjct: 361 DAIEALADAAVAANSAVENIGARRLQTVLERVLEETSFKASDLAGQTVNFDGAAVRDKLS 420

Query: 425 DFPSETDMYHFIL 437
               + D+  FIL
Sbjct: 421 LLTKDVDLSRFIL 433


>gi|294666815|ref|ZP_06732048.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603399|gb|EFF46817.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 455

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/453 (50%), Positives = 323/453 (71%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   SSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|225849338|ref|YP_002729502.1| ATP-dependent protease ATP-binding subunit HslU
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644749|gb|ACN99799.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 448

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/449 (51%), Positives = 323/449 (71%), Gaps = 13/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ LP DLRDE++PKNIL++G
Sbjct: 1   MEVREELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQNLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+L DVA  +V+  + +
Sbjct: 61  PTGVGKTEIARRLAALVKAPFIKVEATKFTEVGYVGRDVESIIRELTDVAFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE++LD LV K              S  RE FR+ L++G + D+ ++I+V
Sbjct: 121 EVREKARKIAEEKVLDYLVPKRPRRYGSLTEEEEESPAREKFRQMLKEGLLDDRVVEIDV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            + +  +    +  G       L E+FS  +G  R KK +++V++    +  +E+++LID
Sbjct: 181 TEKAQAVIGGVVVPGLEDIESQLKEIFSS-LGPSRSKKRKLTVKEALKVIENEEAEKLID 239

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           MD V   +I+ VEN+GIVF+DE DK+ ++ S  +G  VSREGVQRDLLP+VEG+ VSTKY
Sbjct: 240 MDEVQSLAIKRVENFGIVFIDEIDKVASKSSSRSGPDVSREGVQRDLLPIVEGTVVSTKY 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF  ILT+ ++ LI Q
Sbjct: 300 GPVRTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELKPLTKEDFVRILTEPKNALIKQ 359

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK LM TEG+ L+FT+D+I+ +A +A  +N    +IGARRL T++E+++ED SF+A DL+
Sbjct: 360 YKALMLTEGVELEFTQDAIEEIARLAQEVNEKTENIGARRLHTILEKIMEDYSFNAPDLK 419

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + V+IDA  VR  +GD  S  D+  +IL
Sbjct: 420 GQKVIIDANIVREKLGDIISNEDLSRYIL 448


>gi|328954142|ref|YP_004371476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454466|gb|AEB10295.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/444 (51%), Positives = 313/444 (70%), Gaps = 14/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+YIIGQ DAKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVGK
Sbjct: 21  LTPREIVAELDKYIIGQADAKRSVAIALRNRWRRQQIPEGLRDEIAPKNIIMIGPTGVGK 80

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PF+K+E TKFTE+GYVGR+VE +IRDL+++A+N+V+   R++V+ +A
Sbjct: 81  TEIARRLAKLAQSPFLKIEATKFTEVGYVGRDVESMIRDLMELAVNMVKAEAREQVKAKA 140

Query: 127 SINAEERILDALVGKTAT-------------SNTREVFRKKLRDGEISDKEIDIEVADTS 173
               EER+LD L+   +                TRE  R+ LR G + ++ ID+EV+  +
Sbjct: 141 EEVVEERLLDILLPGASKPIAEVAEPNRTGVDPTREKMRQLLRQGRLDERFIDLEVSQRN 200

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             I       G     +N  E+F  +  S R K+ ++ + +    LM++E+ RLIDMD V
Sbjct: 201 IPIVEIFSNAGIEEMDINFKEMFGNIFPS-RTKQRKVKISEARDILMQEEAQRLIDMDRV 259

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++ + VE  GI+FLDE DKIV RD   G  VSREGVQRDLLP+VEGS+V+TK+G + T
Sbjct: 260 VNEARRKVEQSGIIFLDEIDKIVGRDHARGPDVSREGVQRDLLPIVEGSTVTTKHGMVRT 319

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH S+PADL+PE+QGRFP+RV L+SL   +F+ ILT+ ++ LI QY+ LM
Sbjct: 320 DHILFIASGAFHTSKPADLIPEMQGRFPIRVELQSLGVEEFKRILTEPQNALIKQYRALM 379

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEGI LDF  D+I  +A +A  +N    +IGARRL TVME++LEDISF A + Q+ T+ 
Sbjct: 380 ATEGIELDFDPDAIKEIAVLATQVNERTENIGARRLHTVMEKLLEDISFHAPEWQQGTIT 439

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I A+YVR  + D   + D+  +IL
Sbjct: 440 ITADYVRERLSDLVGDQDLSRYIL 463


>gi|311693356|gb|ADP96229.1| heat shock protein HslVU, ATPase subunit HslU [marine bacterium
           HP15]
          Length = 442

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE+      E+A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREAEMKRHEERA 123

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+            ++ S+TR++FRKKLR+GE+ DKEI+I++ ++S+ +
Sbjct: 124 LDAAEERILDALIPPPRDFGEDRQRSSDSSTRQLFRKKLREGELDDKEIEIDLRNSSAGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  + S ++K  +M V         +E+ +L++ + + + 
Sbjct: 184 EIMAPPGMEEM-TNQLQSMFSN-LSSDKRKTRKMKVSDALKRAKEEEAAKLVNEEEIKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI
Sbjct: 242 AIQAVEQNGIVFVDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +++L+ QY+ LM TE
Sbjct: 302 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPEDFKRILTEPDASLVQQYEALMLTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F ED+I  +A+VA  +N +  +IGARRL TV+ER+LE +SF A D       + A
Sbjct: 362 GVKLTFREDAIARIAEVAWKVNESTENIGARRLHTVLERLLETLSFDAGDKVTDGFEVTA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV   +G+   + D+  +IL
Sbjct: 422 EYVDEKLGELSEDEDLSRYIL 442


>gi|119470416|ref|ZP_01613144.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
 gi|119446341|gb|EAW27617.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
          Length = 442

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/441 (49%), Positives = 311/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLNDDLRAEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE +  + + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVEVSIKMTREQQTKKFKHRA 123

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDAL+               S+TR+ FRKKLR+G++ DKEI+I++A    ++
Sbjct: 124 EEAAEDRILDALLPPVKDQYGETQRDENSSTRQTFRKKLREGQLDDKEIEIDLAQVQPNV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +   
Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH+
Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDHM 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+D++PE+QGR P+RV L++L  +DF+ ILT+  ++L  Q +EL+KTE
Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTANDFKRILTEPHASLTEQQRELLKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + + +++D+I+ +A  A  +N    +IGARRL TVME+++E+IS+ AS+    +VVIDA
Sbjct: 362 QVDVQYSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGSSVVIDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G    + D+  FIL
Sbjct: 422 AYVEKHLGALVEDEDLSRFIL 442


>gi|86147299|ref|ZP_01065613.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218710819|ref|YP_002418440.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio splendidus
           LGP32]
 gi|254802323|sp|B7VLM7|HSLU_VIBSL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|85834864|gb|EAQ53008.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218323838|emb|CAV20199.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           splendidus LGP32]
          Length = 446

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/446 (50%), Positives = 308/446 (69%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYR 122

Query: 126 ASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA 
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
               +     PG   +    L  +F   +    KKK +M ++  +  L  +E+ +L++ +
Sbjct: 183 PQMGVEIMSPPGMEEM-TNQLQGMFQN-LAGDTKKKRKMKIKDAFKALTEEEAAKLVNQE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G +
Sbjct: 241 ELKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  
Sbjct: 301 KTDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTE + ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D     
Sbjct: 361 LMKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSK 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +VID  YV   +G+   + D+  FIL
Sbjct: 421 LVIDEAYVISKLGELVEDEDLSRFIL 446


>gi|294625644|ref|ZP_06704267.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600067|gb|EFF44181.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 455

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/453 (50%), Positives = 322/453 (71%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   SSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA L  APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLVNAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|237807244|ref|YP_002891684.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis
           DSM 9187]
 gi|259491383|sp|C4L9W9|HSLU_TOLAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|237499505|gb|ACQ92098.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis
           DSM 9187]
          Length = 443

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ +AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQAEAKRAVAIALRNRWRRMQLSNELRQEVAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+A+ ++RE   ++VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLTDMALKMMREQEMEKVRFR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+    ++            TR++FRKKLR+GE+ DKEI+I+VA    
Sbjct: 123 AHEAAEERVLDVLLPPARSNWGEAEKSETGTHTRQIFRKKLREGELDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   M +G   K ++ V+    +L+ +E+ RL++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-MSAGNTHKRKLKVKDALKQLVEEEAGRLLNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DEFDKI  R   +G  VSREGVQRDLLPL+EG +V+TK+G + TD
Sbjct: 241 EKTIHAVENNGIVFIDEFDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV LK+L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELKNLTVDDFERILTEPNASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FT + I ++A+ A  +N    +IGARRL TV+E+++EDIS+ A+D   +   I
Sbjct: 361 TEQVKIEFTAEGIRSIAEAAWQVNERTENIGARRLHTVLEKLMEDISYDAADNAGQLFSI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DAEYV  ++G    + D+  FIL
Sbjct: 421 DAEYVNRYLGALIEDEDLSRFIL 443


>gi|21241409|ref|NP_640991.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|23821710|sp|Q8PPP7|HSLU_XANAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21106744|gb|AAM35527.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 455

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/453 (51%), Positives = 323/453 (71%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|114319231|ref|YP_740914.1| ATP-dependent protease ATP-binding subunit HslU [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312755|sp|Q0ACL3|HSLU_ALHEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114225625|gb|ABI55424.1| heat shock protein HslVU, ATPase subunit HslU [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 440

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/440 (50%), Positives = 310/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ  AKR+VAIALRNRWRR Q+   L+ E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVQELDKYIIGQDAAKRSVAIALRNRWRRMQVDEALQPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLVD+AI +VRE   + V+ Q
Sbjct: 63  KTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLVDIAIKLVREEAMERVQHQ 122

Query: 126 ASINAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A+  AE+R+LD ++ +         ++ TR+  RKKLR+G + D+EI++E+  +   +  
Sbjct: 123 AADAAEDRVLDIMLPRAQSFDQEDPSAGTRQKLRKKLREGALDDREIEVELRASPMGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L ++F    G  + K+ +M V+     L  +E+ RL++ + +  +++
Sbjct: 183 MAPPGMEEM-TNQLQQMFQN-FGGEKTKRRKMKVKDALEVLKDEEAARLVNDEDLKAEAV 240

Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + VE   IVFLDE DK+  R   G G  VSREGVQRDLLPLVEGS+VSTK+G + TDHIL
Sbjct: 241 ERVEQNAIVFLDEIDKVCKRAEQGTGGDVSREGVQRDLLPLVEGSTVSTKHGMVRTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF  IL++  ++L+ QY+ L+ TEG
Sbjct: 301 FIASGAFHLSKPSDLIPELQGRLPIRVELEALTTDDFVRILSEPSASLVHQYQALIATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
             L+FTED I  +A+VA  +NS   +IGARRL TVMER+LE+IS+SA+D   + V +DA+
Sbjct: 361 CELEFTEDGIRRVAEVAWEVNSRTENIGARRLHTVMERLLEEISYSAADRGGQQVTVDAD 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  H+G    + D+  +IL
Sbjct: 421 YVDQHLGGLVQDEDLSRYIL 440


>gi|300114765|ref|YP_003761340.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           watsonii C-113]
 gi|299540702|gb|ADJ29019.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           watsonii C-113]
          Length = 447

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV EL+++IIGQ  AKRAVA+ALRNRWRR+Q+  +LR+E+ PKNIL++GPTGVG
Sbjct: 9   ELTPRQIVQELNKHIIGQTAAKRAVAVALRNRWRRRQVNEELRNEITPKNILMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE    +VR Q
Sbjct: 69  KTEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQ 128

Query: 126 ASINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+              SNTR+ FRK LR+G++ D+EI+IE+A  S  +
Sbjct: 129 AEDRAEERILDALLPTARAAPHGSMDEQSNTRQKFRKMLREGKLDDREIEIELAAVSMGV 188

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F  + G  R +  R+ V++ +  L  +E+ +LI+ + +   
Sbjct: 189 EIMAPPGMEEM-TSQLQNMFQNL-GGTRTRTRRLRVREAFKLLTEEEAGKLINDEDLKAQ 246

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           S++ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTKYG + TDHI
Sbjct: 247 SLENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSTVSTKYGMVRTDHI 306

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QY  L+KTE
Sbjct: 307 LFIASGAFHLAKPSDLIPEMQGRLPIRVELDALSVDDFVRILTEPNASLTAQYIALLKTE 366

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L FTE+ I  +A +A  +N    +IGARRL TVMER+LE +SF A +   + V+IDA
Sbjct: 367 GISLHFTEEGIARIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHASRKVIIDA 426

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + D   + D+  +IL
Sbjct: 427 AYVDAQLADLAQDEDLSRYIL 447


>gi|325925418|ref|ZP_08186817.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
 gi|325544178|gb|EGD15562.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
          Length = 455

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/453 (50%), Positives = 321/453 (70%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|166710520|ref|ZP_02241727.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 447

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/450 (51%), Positives = 323/450 (71%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D +I + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSIKLYREQAKARVRNQA 120

Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|320539526|ref|ZP_08039193.1| molecular chaperone and ATPase component of HslUV protease
           [Serratia symbiotica str. Tucson]
 gi|320030379|gb|EFW12391.1| molecular chaperone and ATPase component of HslUV protease
           [Serratia symbiotica str. Tucson]
          Length = 444

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/444 (49%), Positives = 304/444 (68%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSHIIGQHKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR    ++    
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRIQSIEKNHAH 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+     +             R+ FRKKLR+G++ DKEI++++A T  
Sbjct: 123 AEELAEKRILDVLIPPAKNNWGQLEEHKEPSAARQAFRKKLREGQLDDKEIELDLAATPI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           ++     PG   +    L  +F   +GS ++K  ++ +++ +  L+ +E+ +L++ + + 
Sbjct: 183 NVEIMAPPGMEEM-TNQLQSMFQN-LGSQKQKPRKLKIKEAFKLLVEEEAGKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE +GIVF+DE DKI  R +  +   VSREGVQRDLLPLVEG +VSTK+G + T
Sbjct: 241 EQAIEAVEQHGIVFIDEIDKICKRGNQSSSPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFI SGAF  + P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK L+
Sbjct: 301 DHILFITSGAFQTANPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALL 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ ++FT D I  +A+ A  +N    +IGARRL TV+ER++EDIS+ AS++  +T+ 
Sbjct: 361 GTEGVNIEFTTDGIRHIAEAAWQVNENTENIGARRLHTVLERLMEDISYDASEINGQTIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YVR H+ +  ++ D+  FIL
Sbjct: 421 IDADYVRSHLDELVADEDLSRFIL 444


>gi|254508172|ref|ZP_05120297.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus 16]
 gi|219548894|gb|EED25894.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus 16]
          Length = 444

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/444 (51%), Positives = 313/444 (70%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+               ++SNTR++FRKKLR+G++ DKEI+I+VA   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQDESSSNTRQIFRKKLREGKLDDKEIEIDVAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ ++  +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV+  +GD   + D+  FIL
Sbjct: 421 IDADYVKAKLGDTIEDEDLSRFIL 444


>gi|78046249|ref|YP_362424.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|123585934|sp|Q3BXT9|HSLU_XANC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|78034679|emb|CAJ22324.1| ATP-dependent HslUV protease ATP-binding subunitHslU [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 455

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/453 (50%), Positives = 321/453 (70%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++VA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LDVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|113461678|ref|YP_719747.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus
           129PT]
 gi|123132272|sp|Q0I5E0|HSLU_HAES1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|112823721|gb|ABI25810.1| ATP-dependent ClpY-related protease [Haemophilus somnus 129PT]
          Length = 443

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++  ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFR 122

Query: 126 ASINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+                 NTR++FRKKLR+G++ D+EI+I++A  + 
Sbjct: 123 AEEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   + SG+ KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY+ LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FTE ++  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  + V+I
Sbjct: 361 TEGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVII 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           + +YV   +GD     D+ HFIL
Sbjct: 421 NGDYVTGALGDVVENEDLSHFIL 443


>gi|89052678|ref|YP_508129.1| ATP-dependent protease ATP-binding subunit HslU [Jannaschia sp.
           CCS1]
 gi|123094441|sp|Q28W08|HSLU_JANSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|88862227|gb|ABD53104.1| heat shock protein HslVU ATPase subunit HslU [Jannaschia sp. CCS1]
          Length = 438

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/438 (55%), Positives = 324/438 (73%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGVG
Sbjct: 3   DLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD A  ++RE+ R+EV+ +
Sbjct: 63  KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAQVMIRENMREEVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEER+++AL GK A   TR++FRKKLR GE+ D  I++EVAD S+ +  F+IP   
Sbjct: 123 AHDAAEERVIEALAGKDAREQTRDMFRKKLRAGELDDTVIELEVADNSNPLGGFEIPSQP 182

Query: 186 SVGIL------NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                      NL +LF  +   GR  K R++V   Y  L+ DE+D+L+D +TV ++++ 
Sbjct: 183 GGMGGMGPGMMNLGDLFKGM--GGRTVKRRLTVAASYDLLIEDEADKLLDAETVTKEALS 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            VE  GIVF+DE DK+ A+    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFI
Sbjct: 241 AVEQSGIVFIDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + 
Sbjct: 301 ASGAFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVA 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++FT+  I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D     V +D  +V
Sbjct: 361 VEFTDGGIRALAHIAAEVNESVENIGARRLYTVLERVFEELSFTAPDRSGDAVTVDEAFV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
             ++G+    TD+  ++L
Sbjct: 421 EQNLGELTRSTDLSRYVL 438


>gi|119943797|ref|YP_941477.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii
           37]
 gi|166221598|sp|A1SQW3|HSLU_PSYIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119862401|gb|ABM01878.1| heat shock protein HslVU, ATPase subunit HslU [Psychromonas
           ingrahamii 37]
          Length = 444

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/443 (48%), Positives = 303/443 (68%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EI  ELDR+IIGQ +AKRAVAIALRNRWRR QL  ++R E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKEIKHELDRHIIGQDNAKRAVAIALRNRWRRMQLDKEMRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE I+RDLVDVAI + RE    +V  +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIVRDLVDVAIKLTREEEMAKVAHK 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILD L+             T  S TR+ FRKKLR+G++ DKE++I++     
Sbjct: 123 AEDLAEDRILDILIPPAKTGNDWETVKTEDSATRQSFRKKLREGKLDDKEVEIDLPAPQI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  + G  + KK +M +++    L+  E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQSMSGKDKTKKRKMKIKEALKVLIESEAAKLVNEEDIK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++   EN GI+F+DE DKI  R    G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 242 EKALFSAENNGIIFIDEIDKICKRGDSAGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           H+LFIASGAF V++P+DL+PE+QGR P+RV L++L + D   ILT+ +++L  QYK L+ 
Sbjct: 302 HMLFIASGAFQVAKPSDLIPELQGRLPIRVELEALTEEDLAKILTEPKASLSEQYKALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEGI L F++D ID +A  A ++N T  +IGARRL T+MER+L+++S+ AS+ + +++ I
Sbjct: 362 TEGITLQFSKDGIDKIAKSAWHVNETTENIGARRLHTLMERILDELSYEASERKGESITI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  +IL
Sbjct: 422 DENYVANTLDDLLENEDLSRYIL 444


>gi|149377310|ref|ZP_01895056.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           algicola DG893]
 gi|149358407|gb|EDM46883.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter
           algicola DG893]
          Length = 439

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/441 (51%), Positives = 312/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+++I+GQ++AKR+VAIALRNRWRR QL + LR+E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELNKHIVGQEEAKRSVAIALRNRWRRMQLDSGLREEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+AI ++RE        +A
Sbjct: 61  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAIKMLREKEMKRHEHRA 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+            T  S+TR++FRKKLR+GE+ DKEI+I++ ++ + +
Sbjct: 121 MDAAEERILDALIPPPRDFKEDSQKTEDSSTRQLFRKKLREGELDDKEIEIDLRNSGAGV 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  M S ++K  +M V      +  +E+ +L++ + + + 
Sbjct: 181 EIMAPPGMEEM-TSQLQNMFSS-MSSDKRKTRKMKVADAMKHVRDEEAAKLVNEEEIKQK 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ VE  GIVF+DE DK+  R       VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI
Sbjct: 239 AIQTVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ +S+L+ QY+ LM TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDSSLVQQYEALMGTE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FTED+I  +A+VA  +N T  +IGARRL TV+ER+LE +S+ A D    +  + A
Sbjct: 359 GVKLTFTEDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYEAGDQVTDSFEVTA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            +V   +G+   + D+  +IL
Sbjct: 419 AFVDEKLGELAEDEDLSRYIL 439


>gi|88799638|ref|ZP_01115214.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297]
 gi|88777723|gb|EAR08922.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297]
          Length = 440

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/439 (51%), Positives = 311/439 (70%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ +AKR+VAIALRNRWRR Q+   +RDE+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDKHIIGQDEAKRSVAIALRNRWRRMQVEEQMRDEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDL +  I + RE     VR +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLAETGIKLFREQEMHAVRPRA 123

Query: 127 SINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              AE+RILD L+ +           S+TR++FRKKLR GE+ DKEI++++A+TS  +  
Sbjct: 124 EDAAEDRILDILLPQARGEDNTDNQDSSTRQIFRKKLRQGELDDKEIEVDIAETSVGVEI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  +FS  MG  +KK  ++ +++    L  +E+  +I+ D + + +I
Sbjct: 184 MAPPGMEEM-TSQLQNMFSN-MGGQKKKTRKLKIKEALKALTDEEAAHMINEDELKQRAI 241

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           Q VE  GIVF+DE DKI   D+  G  VSREGVQRDLLPL+EGS+++TKYG I TDHILF
Sbjct: 242 QAVEQNGIVFIDEIDKIAKNDNRGGGDVSREGVQRDLLPLIEGSTINTKYGMIKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I SGAFH S+P+DL+PE+QGR P+RV+L +L   DF+ ILT+   ++  QYK LM++E +
Sbjct: 302 IGSGAFHFSKPSDLIPELQGRLPIRVNLNALTPDDFKRILTEPNHSITEQYKALMRSEDL 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            + FTED+IDALA  A  +N +  +IGARRL T+MER+ E+IS++AS+   +T VIDA+Y
Sbjct: 362 DVTFTEDAIDALAKTAYQVNESTENIGARRLHTIMERLFENISYTASERSGETQVIDAQY 421

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +G+     D+  FIL
Sbjct: 422 VQDTLGELAQNEDLSRFIL 440


>gi|84390847|ref|ZP_00991539.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
 gi|84376650|gb|EAP93527.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
          Length = 446

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/446 (50%), Positives = 308/446 (69%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYR 122

Query: 126 ASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA 
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
               +     PG   +    L  +F   +    KKK +M ++  +  L  +E+ +L++ +
Sbjct: 183 PQMGVEIMSPPGMEEM-TNQLQGMFQN-LAGDTKKKRKMKIKDAFKALTEEEASKLVNQE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G +
Sbjct: 241 ELKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  
Sbjct: 301 KTDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTE + ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D     
Sbjct: 361 LMKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSK 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ID  YV   +G+   + D+  FIL
Sbjct: 421 LLIDEAYVISKLGELVEDEDLSRFIL 446


>gi|307292834|ref|ZP_07572680.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium
           chlorophenolicum L-1]
 gi|306880900|gb|EFN12116.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium
           chlorophenolicum L-1]
          Length = 435

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/437 (54%), Positives = 326/437 (74%), Gaps = 2/437 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+  N +P+ IV+ LD +IIGQ DAKRAVA+ALRNRWRRQ+L ADLRDE+ PKNIL++G
Sbjct: 1   MKMNDNLTPKAIVAALDAHIIGQADAKRAVAVALRNRWRRQRLAADLRDEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+
Sbjct: 61  PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            VRE AS  A  R+LDAL GK A+  TR  FR+++ + +++D E+++EVAD+ S      
Sbjct: 121 AVREAASEAAMTRLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPSMPMEIP 180

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             GG  +G++NLS++ SK  G  +KK+ ++ V + + +L+ +E D+ +D D V R +I  
Sbjct: 181 GMGG-QIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAINS 239

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            E  GIVF+DE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIA
Sbjct: 240 AEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFIA 298

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TEG+ +
Sbjct: 299 SGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVTV 358

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           D T D I A+A +A  +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV 
Sbjct: 359 DLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYVE 418

Query: 421 LHIGDFPSETDMYHFIL 437
             +      TD+  ++L
Sbjct: 419 KQLAVVARNTDLSKYVL 435


>gi|260779592|ref|ZP_05888482.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604401|gb|EEX30705.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 444

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 313/444 (70%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEER+LDAL+               ++SNTR++FRKKLR+G++ DKEI+++VA   
Sbjct: 123 AEEQAEERVLDALLPPARDAWGQSEQQDESSSNTRQIFRKKLREGKLDDKEIEVDVAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ +++ +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKEAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID++YV+  +GD   + D+  FIL
Sbjct: 421 IDSDYVKAKLGDTVEDEDLSRFIL 444


>gi|71897647|ref|ZP_00679892.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
 gi|71732550|gb|EAO34603.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
          Length = 459

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/454 (51%), Positives = 319/454 (70%), Gaps = 23/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKR VAIALRNRWRR Q+P +LR+E+MPKNIL++GPTG
Sbjct: 9   SSTMTPREIVQELDRHIVGQQAAKRLVAIALRNRWRRMQVPQELRNEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVR 128

Query: 124 EQASINAEERILDAL-------------------VGKTATSNTREVFRKKLRDGEISDKE 164
            QA   AEERILDAL                         S TR  FR+ LR GE+ ++E
Sbjct: 129 TQAEEYAEERILDALLPRRSLGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEERE 188

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+++VA   S   +   P G       L ++FS + G G+ +K +++++   P L+ +E+
Sbjct: 189 IELDVAVNVS--MDIMTPPGMEEMGQQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEA 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSS 283
            +L++ D +   +I+  E  GIVF+DE DK+V R     G  VSREGVQRDLLPLVEGS+
Sbjct: 246 AKLVNEDEIRSAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSN 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++
Sbjct: 306 VSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKA 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ 
Sbjct: 366 ALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYE 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 426 SPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|292492404|ref|YP_003527843.1| heat shock protein HslVU, ATPase HslU [Nitrosococcus halophilus
           Nc4]
 gi|291580999|gb|ADE15456.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus
           halophilus Nc4]
          Length = 441

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV ELD+YIIGQ  AKRAVA+ALRNRWRR+QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   ELTPRQIVQELDKYIIGQTAAKRAVAVALRNRWRRRQLSEELRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+D+AI + RE    +VR++
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLLDIAIKMTREQEMAKVRDR 122

Query: 126 ASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERIL+AL+  +           S+TR+ FRK LR+G++ D+EI++E+A  S  +
Sbjct: 123 AEDAAEERILNALLPPSRAMAGETTEGDSSTRQKFRKMLREGKLDDREIEVELAAVSMGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   +G  R +  R+ V++ +  L  +E+ +LI+ + +   
Sbjct: 183 EIMAPPGMEEM-TSQLQNMFQH-LGGSRTRTRRLRVREAFKLLTEEEAGKLINDEDLKAR 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++  VE  GIVFLDE DKI  R   +G  VSREGVQRDLLP+VEGS+VSTK+G + TDHI
Sbjct: 241 ALDNVEQNGIVFLDEMDKIAKRSEVSGTDVSREGVQRDLLPMVEGSTVSTKHGMVRTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QY  L+KTE
Sbjct: 301 LFIASGAFHLAKPSDLIPELQGRLPIRVELSALSVNDFVRILTEPSASLTEQYTALLKTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FTE+ I  +A +A ++N    +IGARRL TVMER+LE +SF A     + V IDA
Sbjct: 361 GVSLYFTENGIARIAQIAWHVNERTENIGARRLHTVMERLLEGLSFEADAHASREVTIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + D   + D+  +IL
Sbjct: 421 AYVDTQLADLAQDEDLSRYIL 441


>gi|182681293|ref|YP_001829453.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           M23]
 gi|238691118|sp|B2IA20|HSLU_XYLF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|182631403|gb|ACB92179.1| heat shock protein HslVU, ATPase subunit HslU [Xylella fastidiosa
           M23]
 gi|307579744|gb|ADN63713.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 459

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/454 (51%), Positives = 320/454 (70%), Gaps = 23/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 9   SSTMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVR 128

Query: 124 EQASINAEERILDAL-------------------VGKTATSNTREVFRKKLRDGEISDKE 164
            QA   AEERILDAL                         S TR  FR+ LR GE+ ++E
Sbjct: 129 TQAEEYAEERILDALLPRRSVGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEERE 188

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+++VA   S   +   P G       L ++FS + G G+ +K +++++   P L+ +E+
Sbjct: 189 IELDVAVNVS--MDIMTPPGMEEMGQQLRQMFSNI-GGGKSQKRKLAIKAARPLLIEEEA 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSS 283
            +L++ D +   +I+  E  GIVF+DE DK+V R     G  VSREGVQRDLLPLVEGS+
Sbjct: 246 AKLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSN 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++
Sbjct: 306 VSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKA 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ 
Sbjct: 366 ALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYE 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 426 SPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|83748663|ref|ZP_00945681.1| heat shock protein chaperone; cpX superfamily [Ralstonia
           solanacearum UW551]
 gi|207727528|ref|YP_002255922.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum MolK2]
 gi|207741920|ref|YP_002258312.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum IPO1609]
 gi|83724707|gb|EAP71867.1| heat shock protein chaperone; cpX superfamily [Ralstonia
           solanacearum UW551]
 gi|206590765|emb|CAQ56377.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum MolK2]
 gi|206593306|emb|CAQ60233.1| atp-dependent hsl protease atp-binding subunit hslu protein
           [Ralstonia solanacearum IPO1609]
          Length = 444

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/446 (51%), Positives = 312/446 (69%), Gaps = 13/446 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + 
Sbjct: 181 MPGMDIMGPPGMEEM-TEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +I  VE  GIVFLDE DKI +R   G G  VSR+GVQRDLLPLVEG++VSTKYG I
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+ 
Sbjct: 299 KTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +T
Sbjct: 359 LMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGET 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   + +     D+  ++L
Sbjct: 419 VTIDAAYVDSRLNELAGSEDLSRYVL 444


>gi|95928614|ref|ZP_01311361.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135404|gb|EAT17056.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas
           acetoxidans DSM 684]
          Length = 442

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/442 (50%), Positives = 318/442 (71%), Gaps = 10/442 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+PA+LRDE+ PKNI+++G TGV
Sbjct: 2   TNFTPREIVSELDRYIIGQRGAKRAVAVALRNRWRRQQVPAELRDEISPKNIIMIGATGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE ++RDLV++AI +VRE    +VR 
Sbjct: 62  GKTEIARRLAKLAQAPFIKVEASKFTEVGYVGRDVESMVRDLVELAIIMVREQEAKKVRL 121

Query: 125 QASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +A   AEE++LD L+     +         +TR+  R+ LR GE+ ++ +++E  +++  
Sbjct: 122 KAEERAEEKLLDLLLPGERKNLDSEDDSSSSTRDKLRRLLRMGELDNRFVELETEESTIP 181

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P GA    LN+ E+F   M   + K+ R++V +    L+  E+++L+DMD V +
Sbjct: 182 AMEVLTPPGAEDMGLNIKEMFGN-MFPKKTKRRRIAVSEARQILIDQEAEKLVDMDNVQQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +  + E  GI+F+DE DK+ ++D G G  VSREGVQRD+LP+VEGS+V+TKYG++ TDH
Sbjct: 241 QARDLTEQSGIIFIDEIDKVASKDGGQGPEVSREGVQRDILPIVEGSTVNTKYGAVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILF+A+GAFHV++P+DL+PE+QGRFP+RV L +L + +F  ILT+ +++L+ QY+ LM T
Sbjct: 301 ILFVAAGAFHVAKPSDLIPELQGRFPIRVELDNLGEEEFVRILTEPKNSLVNQYQALMST 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E I L FT ++I  +A  A  +N    +IGARRL T+ME++LE++SF A ++ EKT+ ID
Sbjct: 361 ENITLSFTSEAIHEIARTAAQVNEQTENIGARRLHTIMEKLLEELSFDAPEMNEKTLTID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
              VR  +GD   + D+  FIL
Sbjct: 421 VAQVRESLGDIVGDEDLSRFIL 442


>gi|110835106|ref|YP_693965.1| ATP-dependent protease ATP-binding subunit HslU [Alcanivorax
           borkumensis SK2]
 gi|123149266|sp|Q0VMA5|HSLU_ALCBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110648217|emb|CAL17693.1| heat shock protein HslU [Alcanivorax borkumensis SK2]
          Length = 445

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/444 (52%), Positives = 318/444 (71%), Gaps = 13/444 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IVSEL+R+I+GQ  AKRAVA+ALR RWRR QLP ++R E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKDIVSELNRHIVGQDAAKRAVALALRTRWRRMQLPEEMRAEVAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL++VAI ++R+     V  Q
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEVAIKLLRDKEIARVGSQ 122

Query: 126 ASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILDAL+    T        ++TR++FRKKLR+GE+ DKEID++VA   + I 
Sbjct: 123 ADDAAEERILDALLPPARTDDSSANTDNSTRQIFRKKLREGELDDKEIDVDVASNPAGID 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L ++FSK+  + ++K  ++ V++ Y  +  +E+ R ++ D +   +
Sbjct: 183 IMAPPGMEEM-TSQLQQMFSKMGNNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKVQA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  VEN GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTKYG + TDHIL
Sbjct: 242 IDAVENSGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+SRP+DL+PE+QGR P+RV L  L+  DF+ ILT+ + +L  QYK L++TEG
Sbjct: 302 FIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLETEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----EKTVV 413
           + L+ T+D I  +A+VA  +N    +IGARRL TV+E++LE+ISF A  L     +K +V
Sbjct: 362 LNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKPLV 421

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DAE V  ++G+   + D+  +IL
Sbjct: 422 LDAEAVDRYLGELADDEDLSRYIL 445


>gi|192359011|ref|YP_001980928.1| ATP-dependent protease ATP-binding subunit HslU [Cellvibrio
           japonicus Ueda107]
 gi|226704519|sp|B3PI65|HSLU_CELJU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|190685176|gb|ACE82854.1| heat shock protein HslVU, ATPase subunit HslU [Cellvibrio japonicus
           Ueda107]
          Length = 440

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 314/441 (71%), Gaps = 12/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++I+GQQDAKRAVAIALRNRWRR QLPAD+R E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVHELDKHIVGQQDAKRAVAIALRNRWRRMQLPADMRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVDVAI + RE     V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDVAIKLRREQAMKAVQYR 122

Query: 126 ASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A+  AEERILD L+     ++         TR++FRKKLR+G++ DKEI+I+VA  S  +
Sbjct: 123 AAEAAEERILDVLLPPARDTSEEESKHESSTRQIFRKKLREGQLDDKEIEIDVAAASVGV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +FS  +G  R KK +M+V+K + +L  +E+ +L+  + +   
Sbjct: 183 EIMAPPGMEEM-TSQLQNMFSS-LGRERTKKTKMTVKKAFKQLQDEEAAKLVSEEDIKTQ 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +++ VE  GIVF+DE DK+  R + +G  VSREGVQRDLLPL+EG +VSTK+G + TDHI
Sbjct: 241 ALETVEQNGIVFIDEIDKVARRGNVSGADVSREGVQRDLLPLIEGCTVSTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAFH+S+P+DL+PE+QGR P+RV L++L   DF  ILT+ +++L  Q + L+KTE
Sbjct: 301 LFITSGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPKASLTEQQQALLKTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT+D I  +A+ A ++N    +IGARRL T++ER+LED+SF A      ++ ID 
Sbjct: 361 GVDIQFTQDGIRRIAETAFDVNERTENIGARRLHTILERLLEDVSFDA-GNDTSSIRIDG 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G+     D+  +IL
Sbjct: 420 AYVDAHLGELAKNEDLSRYIL 440


>gi|90417285|ref|ZP_01225211.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330870|gb|EAS46133.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 442

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/442 (52%), Positives = 317/442 (71%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ DAKR+VAIALRNRWRR QL  D+R+E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVHELNRHIIGQDDAKRSVAIALRNRWRRAQLDDDMRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVG++VE IIRDLV+ A+  VRE    +V ++
Sbjct: 63  KTEIARRLARLANAPFVKVEATKFTEVGYVGKDVESIIRDLVETAVKQVREQEIKKVEQR 122

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A  +AEERILD L+            TS+TR++FRKKLR+G ++DKEI+IE++ T++ + 
Sbjct: 123 AMDSAEERILDVLLPPARSTDGQSEQTSSTRQIFRKKLREGALNDKEIEIELSQTAAGVE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +FS  MG G+    +++V +    L  +E+ +LI+ + +   +
Sbjct: 183 IMAPPGMEEM-TSQLQNMFSS-MGKGKTVTRKLTVAEALKNLKEEEAAKLINEEEIKAAA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +   E  GIVFLDE DK+  R   +G  VSREGVQRDLLPL+EGS+VSTKYG I TDHIL
Sbjct: 241 VSTAEQNGIVFLDEIDKVCRRGEASGADVSREGVQRDLLPLIEGSTVSTKYGMIKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L SL  +DF  ILT+ +++L  QY ELM TEG
Sbjct: 301 FIASGAFHLAKPSDLIPELQGRLPIRVELNSLKINDFERILTEPKASLTKQYCELMATEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--QEKTVVID 415
           + ++FTED +  +A++A ++N    +IGARRL T+MER+LE+IS+ AS+L  +++T  ID
Sbjct: 361 VQINFTEDGVRRIAEIAFDVNEGTENIGARRLHTIMERLLEEISYEASELGAKKETFSID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             +V   +G+  +  D+  FIL
Sbjct: 421 KAFVDKQLGELAANEDLTRFIL 442


>gi|58583615|ref|YP_202631.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84625420|ref|YP_452792.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|75433993|sp|Q5GVM7|HSLU_XANOR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123520884|sp|Q2NYV9|HSLU_XANOM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|58428209|gb|AAW77246.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84369360|dbj|BAE70518.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 455

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/453 (50%), Positives = 323/453 (71%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166
            QA   AE+ ILDAL+ + AT                 ++TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F +D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|289667444|ref|ZP_06488519.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 447

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/450 (51%), Positives = 320/450 (71%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|94309077|ref|YP_582287.1| ATP-dependent protease ATP-binding subunit HslU [Cupriavidus
           metallidurans CH34]
 gi|93352929|gb|ABF07018.1| molecular chaperone and ATPase component of HslUV protease
           [Cupriavidus metallidurans CH34]
          Length = 439

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 312/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRTKA 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+R+LD L+               SNTR+VFRKKLR+GE+ +K+I++EV+    ++
Sbjct: 121 EDAAEDRLLDVLLPPPRDIGFAQHEEKDSNTRQVFRKKLREGELDEKDIELEVSAGMPNM 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG        +  +F+  +G G+K + +M V+  +  L+ +E+ +L++ + +   
Sbjct: 181 DIMGPPGM-EDMTEQIRSMFAG-LGQGKKARRKMKVKDAFKLLIDEEAAKLVNEEELKHK 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++V+TKYG I TDHI
Sbjct: 239 AIANVEQNGIVFLDEIDKIASRSEVGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T+++L  QY+ L+KTE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQALLKTE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L F+ D I  LA++A ++N  V +IGARRL TVMER+LED+SF A+    +TV +DA
Sbjct: 359 EVELQFSPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSGETVTVDA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +GD     D+  ++L
Sbjct: 419 AYVDARLGDLAGNEDLSRYVL 439


>gi|323498089|ref|ZP_08103093.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis
           DSM 21326]
 gi|323316800|gb|EGA69807.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis
           DSM 21326]
          Length = 444

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/444 (50%), Positives = 310/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLDESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+                +SNTR++FRKKLR+G++ DKEI+I+VA   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ ++  +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYVALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV+  +GD   + D+  FIL
Sbjct: 421 IDAAYVKAKLGDTIEDEDLSRFIL 444


>gi|301155383|emb|CBW14849.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus parainfluenzae T3T1]
          Length = 444

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 306/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAK 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  +F   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSMFQS-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  +TV I
Sbjct: 362 TEGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVSEALGEVIENEDLSRFIL 444


>gi|329894773|ref|ZP_08270574.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC3088]
 gi|328922762|gb|EGG30095.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC3088]
          Length = 439

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/439 (52%), Positives = 317/439 (72%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDRHIVGQADAKRAVAIALRNRWRRMQLPADLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ +I + RE   ++V+ +
Sbjct: 63  KTEIARRLAKLAKAPFLKVEATKFTEVGYVGRDVESIVRDLVETSIKMYREQAVEQVQFR 122

Query: 126 ASINAEERILDALVGKTATSNT------REVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AEERILDAL+    T ++      R++ RKKLR+G++ DKEI+I++ +  + +   
Sbjct: 123 AEEAAEERILDALLPPARTEDSSSSGAARQMMRKKLREGDLDDKEIEIDLRERVAGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  +FS  MG G+ KK ++++++ +  L  +E+ +LI+ D + + ++Q
Sbjct: 183 APPGMEEM-TQQLQSMFSS-MGQGKHKKHKLTIKEAFKALSEEEAHKLINEDELKQKAVQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EGSSVSTKYG + TDHILFI
Sbjct: 241 AAEQNGIVFIDELDKVAKRGDTGGADVSREGVQRDLLPLIEGSSVSTKYGFVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+S+P+DL+PE+QGR P+RV L +L   DF  ILT+ +++L  QY  L+  +G+ 
Sbjct: 301 ASGAFHLSKPSDLIPELQGRLPIRVELAALTPDDFERILTEPKASLTEQYTALLAADGLA 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEY 418
           + FT D +  +A+ A  +N  V +IGARRL TVMER+L++ SFSASD    +T++IDA+Y
Sbjct: 361 IQFTPDGVRRIAESAYQVNEQVENIGARRLHTVMERLLDEASFSASDHATGETLIIDADY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+G +  + D+  FIL
Sbjct: 421 VDQHLGAYRDDQDLSKFIL 439


>gi|289664007|ref|ZP_06485588.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 447

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/450 (51%), Positives = 320/450 (71%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRTAAIEACEQHGIVFIDEIDKVAKRGEVGSNGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|325928767|ref|ZP_08189936.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
 gi|325540848|gb|EGD12421.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           perforans 91-118]
          Length = 447

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/450 (50%), Positives = 320/450 (71%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|254521403|ref|ZP_05133458.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp.
           SKA14]
 gi|219718994|gb|EED37519.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp.
           SKA14]
          Length = 457

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/449 (50%), Positives = 312/449 (69%), Gaps = 20/449 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVGK
Sbjct: 11  MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR QA
Sbjct: 71  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQA 130

Query: 127 SINAEERILDAL-----------------VGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL                       + TR  FRK LR+GE+ ++EI++++
Sbjct: 131 EERAEDRILDALLPRRSGGIGFDPDVARNEPSAQDNETRIKFRKMLRNGELDEREIELDL 190

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A   S   +   P G       L  +F+ + G  +  K  ++++   P L+ +E+ +L++
Sbjct: 191 AANVS--MDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVN 248

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            D +   +I+  E +GIVF+DE DK+  R DS  G  VSREGVQRDLLPLVEGS+VSTKY
Sbjct: 249 EDDIRTAAIEACEQHGIVFIDEIDKVAKRGDSVGGGDVSREGVQRDLLPLVEGSNVSTKY 308

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++ L  Q
Sbjct: 309 GTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALTKQ 368

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TEG+ + FT D+I+ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D  
Sbjct: 369 YEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRD 428

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +T+ ID+ YV  H+G+   + D+  +IL
Sbjct: 429 GETLAIDSAYVDAHLGELVQDPDLSRYIL 457


>gi|149189185|ref|ZP_01867472.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
 gi|148836939|gb|EDL53889.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
          Length = 444

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/444 (51%), Positives = 308/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V  +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVTFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+               ++SNTR+VFRKKLR+G++ DKEIDIE A   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIDIETAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +G   KKK ++ ++  +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQSMFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIYNVENNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFI SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYIALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTED I  +AD A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEEVDVEFTEDGIQQIADAAWTVNETTENIGARRLHTVMERLMDEISFDATDKPGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID+ YV+  +G+F  + D+  FIL
Sbjct: 421 IDSGYVKSKLGEFVEDEDLSRFIL 444


>gi|126734393|ref|ZP_01750140.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. CCS2]
 gi|126717259|gb|EBA14123.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Roseobacter sp. CCS2]
          Length = 435

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 249/435 (57%), Positives = 325/435 (74%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE+R++ A+ G  A   TRE+FRKKL+ GE+ +  I++E+ DTS+ +  F+IPG 
Sbjct: 122 KARAAAEDRVITAVAGTDARDTTREMFRKKLKSGELDNTVIELELTDTSNPMGGFEIPGQ 181

Query: 185 ASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                   NL +LF K M  GR  K +M+V   Y  L+ DE+D+L+D +TV + +++ VE
Sbjct: 182 PGGMGGMMNLGDLFGKAM-GGRTVKKQMTVADSYEALVADEADKLLDDETVTKAALEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASG
Sbjct: 241 QNGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L LQY  LMKTE + + F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYSALMKTEEVTVTF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE+ I ALA +A  +N +V +IGARRL TV+ERV ED+SF+A D     + IDA +V  H
Sbjct: 361 TENGIKALAKIAAEVNESVENIGARRLYTVIERVFEDLSFNAPDRAGDDIAIDAAFVEEH 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+    TD+  ++L
Sbjct: 421 LGELSRSTDISRYVL 435


>gi|312882762|ref|ZP_07742496.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369546|gb|EFP97064.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 444

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/444 (50%), Positives = 309/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAIN+  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAINMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+                TSNTR+VFRKKLR+G++ DK+I++++A   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQEEGTSNTRQVFRKKLREGKLDDKDIEVDLAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDALKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ SGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVTSGAFQVAKPSDLIPELQGRLPIRVELEALSSEDFKRILTEPKASLTEQYIALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 QTENVDIEFTEDGIVQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATDKAGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA+YV+  +G+F  + D+  FIL
Sbjct: 421 IDADYVKTRLGEFVEDEDLSRFIL 444


>gi|170730012|ref|YP_001775445.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           M12]
 gi|238687980|sp|B0U6U9|HSLU_XYLFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167964805|gb|ACA11815.1| heat shock protein [Xylella fastidiosa M12]
          Length = 459

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/454 (51%), Positives = 319/454 (70%), Gaps = 23/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 9   SSTMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVR 128

Query: 124 EQASINAEERILDAL-------------------VGKTATSNTREVFRKKLRDGEISDKE 164
            Q    AEERILDAL                         S TR  FR+ LR GE+ D+E
Sbjct: 129 TQVEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDRE 188

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+++VA   S   +   P G       L ++FS + G G+ +K +++++   P L+ +E+
Sbjct: 189 IELDVAVNVS--MDIMTPPGMEEMGQQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEA 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSS 283
            +L++ D +   +I+  E  GIVF+DE DK+V R     G  VSREGVQRDLLPLVEGS+
Sbjct: 246 AKLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSN 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++
Sbjct: 306 VSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKA 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ 
Sbjct: 366 ALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYE 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 426 SPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|325918371|ref|ZP_08180502.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535394|gb|EGD07259.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 447

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/450 (51%), Positives = 321/450 (71%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  ++TR  FR+ LR+GE+ ++EI++EV
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R     NG  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVTLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|15642669|ref|NP_232302.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|229509799|ref|ZP_04399280.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|229516923|ref|ZP_04406369.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC9]
 gi|229606784|ref|YP_002877432.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae
           MJ-1236]
 gi|254851211|ref|ZP_05240561.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           cholerae MO10]
 gi|255744365|ref|ZP_05418317.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera
           CIRS 101]
 gi|262158525|ref|ZP_06029640.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae INDRE 91/1]
 gi|11133077|sp|Q9KNQ7|HSLU_VIBCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9657268|gb|AAF95815.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229345986|gb|EEO10958.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC9]
 gi|229353273|gb|EEO18212.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|229369439|gb|ACQ59862.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae MJ-1236]
 gi|254846916|gb|EET25330.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio
           cholerae MO10]
 gi|255737890|gb|EET93283.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera
           CIRS 101]
 gi|262029686|gb|EEY48335.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae INDRE 91/1]
          Length = 443

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA  PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|300692949|ref|YP_003753944.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum PSI07]
 gi|299080009|emb|CBJ52684.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum PSI07]
          Length = 444

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/446 (51%), Positives = 312/446 (69%), Gaps = 13/446 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SN R+VFRKKLR+G++ DKEI++E+A  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFSQPEERDSNARQVFRKKLREGQLDDKEIELEIAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + 
Sbjct: 181 MPGMDIMGPPGMEEM-TEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +I  VE  GIVFLDE DKI +R   G G  VSR+GVQRDLLPLVEG++VSTKYG I
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+ 
Sbjct: 299 KTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFKAILTQTDASLTKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +T
Sbjct: 359 LMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGET 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   + +     D+  ++L
Sbjct: 419 VTIDAAYVDNRLNELAGSEDLSRYVL 444


>gi|296533581|ref|ZP_06896149.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas
           cervicalis ATCC 49957]
 gi|296266089|gb|EFH12146.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas
           cervicalis ATCC 49957]
          Length = 445

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/436 (54%), Positives = 325/436 (74%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ +AKRAVAIALRNRWRRQQLP  +R+E++PKNIL++GPTG G
Sbjct: 11  NLSPREIVSELDRFIIGQHEAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+++I   RE  R EV+ +
Sbjct: 71  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEISITRTREVARKEVQAK 130

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPGG 184
           A + AEER++ ALVG+ A+  TR  FR+ LR+G +  KE++++VAD         D+PG 
Sbjct: 131 AELAAEERLITALVGEGASGETRMKFRRMLREGSLEQKEVEVQVADQGPAAGAAMDVPGM 190

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               + N+ E+  K+ G  + +  +M+V +    L +DE+DRL+D + + RD++   EN 
Sbjct: 191 PPGQMANIQEMMGKMFGRPQ-RARKMTVAEARRALTQDEADRLLDQEKLTRDAVAHAENN 249

Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           GIVF+DE DK+ AR S +G     VSREGVQRDLLPL+EG++V+TK+G + TDHILF+AS
Sbjct: 250 GIVFVDEIDKVCARSSDSGFRGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFVAS 309

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L +L + DFR ILT+ E +L  QY  L+ TEG+ L 
Sbjct: 310 GAFHIAKPSDLLPELQGRLPIRVELGALTRDDFRRILTEPEHSLAKQYVALLSTEGVALQ 369

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            TED+I+A+AD+A ++N+ V +IGARRL TV+E++LE+ISFSASD   +TV +DA YV+ 
Sbjct: 370 LTEDAIEAIADLAADINARVENIGARRLATVLEKLLEEISFSASDRHGETVRVDAAYVKE 429

Query: 422 HIGDFPSETDMYHFIL 437
            +    +  D+  FIL
Sbjct: 430 KVAPLAASADLSRFIL 445


>gi|300705554|ref|YP_003747157.1| ATPase of the hsluv protease, molecular chaperone [Ralstonia
           solanacearum CFBP2957]
 gi|299073218|emb|CBJ44576.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum CFBP2957]
          Length = 445

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/447 (51%), Positives = 312/447 (69%), Gaps = 14/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + 
Sbjct: 181 MPGMDIMGPPGMEEM-TEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           +   +I  VE  GIVFLDE DKI +R    G G  VSR+GVQRDLLPLVEG++VSTKYG 
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGGEVSRQGVQRDLLPLVEGTTVSTKYGM 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+
Sbjct: 299 IKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVGDFQAILTQTDASLTKQYQ 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +
Sbjct: 359 ALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGE 418

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +     D+  ++L
Sbjct: 419 TVTIDAAYVDSRLNELAGSEDLSRYVL 445


>gi|71905846|ref|YP_283433.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|123733410|sp|Q47JL8|HSLU_DECAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71845467|gb|AAZ44963.1| Heat shock protein HslU [Dechloromonas aromatica RCB]
          Length = 446

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/447 (52%), Positives = 316/447 (70%), Gaps = 16/447 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIVSELD++I+GQ++AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGV
Sbjct: 2   TTMTPQEIVSELDKHIVGQKNAKKAVAIALRNRWRRSQVAEPLRQEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI   RE     +R 
Sbjct: 62  GKTEIARRLARLANAPFIKIEATKFTEVGYVGRDVETIIRDLVEMAIKSHRERAMKAMRA 121

Query: 125 QASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +A   AEERILD L+                 A + TR+ FRKKLR+GE+ DKE+DIEVA
Sbjct: 122 RAEDAAEERILDVLLPTVRGPNFFAENSESTAAENTTRQKFRKKLREGELDDKEVDIEVA 181

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             S     F  PG   +    +  +F  V G G+KK  ++S+++    L  +E+ +L++ 
Sbjct: 182 APSLQAEIFAPPGMEEL-TQQIQGMFQSV-GGGKKKSRKLSIKEALKLLTDEEAAKLVND 239

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D V +++++ VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG++VSTKYG 
Sbjct: 240 DDVKQEAVKAVEQNGIVFLDELDKIASRSEMHGADVSRQGVQRDLLPLVEGTTVSTKYGM 299

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  QY+
Sbjct: 300 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTRQYQ 359

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L++TEG+ L+F ED I  LA++A  +N    +IGARRL TVME++LE++SF A  +   
Sbjct: 360 ALLETEGVQLEFVEDGIRRLAEIAFQVNEKTENIGARRLHTVMEKLLEEVSFDAGKVGLD 419

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V+IDA YV   +G+  ++ D+  ++L
Sbjct: 420 KVLIDAAYVNTKLGELAADEDLSRYVL 446


>gi|304392730|ref|ZP_07374670.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130]
 gi|303295360|gb|EFL89720.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130]
          Length = 434

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 260/435 (59%), Positives = 349/435 (80%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIGQ DAKRAVA+A+RNRWRRQQL + +R+E+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRFIIGQNDAKRAVAVAMRNRWRRQQLESPMREEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VE IIRDLV++ I +VRE +R++V+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVESIIRDLVEIGIGLVREKKREQVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A I AE+R+LDALVG TA+ +TR  F KKLR+GE+ +KEI++EVADT +    F+IPG 
Sbjct: 122 KAHIAAEDRVLDALVGSTASPSTRASFMKKLREGELDEKEIEVEVADTGAP-GGFEIPGM 180

Query: 185 --ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                G+++L E+ SK MG  + KK + +V++ Y  L+ +ESD+L+D + V  ++++ V+
Sbjct: 181 PPGQGGMIDLGEIMSK-MGGKKTKKRKTTVKESYELLIAEESDKLLDDEQVVAEALESVQ 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N  IVFLDE DKI   ++  G  VSREGVQRDLLPLVEG++V+TKYG + TDHILF+ASG
Sbjct: 240 NDAIVFLDEIDKIAVSENVRGGSVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFVASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L K DF  ILT+TE++LI QY  L+ TE + ++F
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELRALTKDDFVRILTETEASLIKQYIALLGTEDMTVEF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALAD+AV LNS+V +IGARRLQTVME+VL+++SF A D    TV +DAE+VR +
Sbjct: 360 TEDAIDALADIAVELNSSVENIGARRLQTVMEKVLDEVSFEAPDRSGDTVTVDAEFVRKN 419

Query: 423 IGDFPSETDMYHFIL 437
           +G+  ++TD+  +IL
Sbjct: 420 VGELAADTDLSRYIL 434


>gi|190575906|ref|YP_001973751.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas
           maltophilia K279a]
 gi|190013828|emb|CAQ47466.1| putative ATP-dependent Hsl protease ATP-binding subunit (heat shock
           protein) [Stenotrophomonas maltophilia K279a]
          Length = 457

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/449 (49%), Positives = 309/449 (68%), Gaps = 20/449 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL  +LR+E+MPKNIL++GPTGVGK
Sbjct: 11  MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE  +  VR QA
Sbjct: 71  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQA 130

Query: 127 SINAEERILDAL-----------------VGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL                       + TR  FRK LR+GE+ ++EI++++
Sbjct: 131 EERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDEREIELDL 190

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A   S   +   P G       L  +F+ + G  +  K  ++++   P L+ +E+ +L++
Sbjct: 191 AANVS--MDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVN 248

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY 288
            D +   +I+  E +GIVF+DE DK+  R     G  VSREGVQRDLLPLVEGS+VSTKY
Sbjct: 249 EDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKY 308

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++ L  Q
Sbjct: 309 GTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQ 368

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L+ TEG+ + FT D+I+ LA++A  +N    +IGARRL TV+ER+L+ +S+ A D  
Sbjct: 369 YEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRD 428

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +++ ID+ YV  H+G+   + D+  +IL
Sbjct: 429 GESLAIDSAYVDKHLGELVQDPDLSRYIL 457


>gi|260877941|ref|ZP_05890296.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308089756|gb|EFO39451.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|328471827|gb|EGF42704.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           parahaemolyticus 10329]
          Length = 443

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               TSNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EAAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++      VI
Sbjct: 361 TENVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +GD     D+  FIL
Sbjct: 421 DAAYVKERLGDTIENEDLSRFIL 443


>gi|15838086|ref|NP_298774.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa
           9a5c]
 gi|11133082|sp|Q9PD94|HSLU_XYLFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9106512|gb|AAF84294.1|AE003978_2 heat shock protein [Xylella fastidiosa 9a5c]
          Length = 459

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/454 (51%), Positives = 319/454 (70%), Gaps = 23/454 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 9   SSTMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVR 128

Query: 124 EQASINAEERILDAL-------------------VGKTATSNTREVFRKKLRDGEISDKE 164
            QA   AEERILD L                         S TR  FR+ LR GE+ ++E
Sbjct: 129 TQAEEYAEERILDVLLPRRSVGIGFDVDADVIRQEPSAHESETRAKFRRMLRSGELEERE 188

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+++VA   S   +   P G       L ++FS + G G+ +K +++++   P L+ +E+
Sbjct: 189 IELDVAVNVS--MDIMTPPGMEEMGQQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEA 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSS 283
            +L++ D +   +I+  E  GIVF+DE DK+V R     G  VSREGVQRDLLPLVEGS+
Sbjct: 246 AKLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSN 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ ++
Sbjct: 306 VSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKA 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S+ 
Sbjct: 366 ALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLEMLSYE 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 426 SPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459


>gi|261211240|ref|ZP_05925529.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC341]
 gi|260839741|gb|EEX66352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC341]
          Length = 444

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/444 (51%), Positives = 308/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEER+LDAL+                +S TR+VFRKKLR+G+++DKEI+I VA   
Sbjct: 123 AEELAEERVLDALLPPARDAWGQAEQKEENSSTTRQVFRKKLREGQLNDKEIEINVATPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYVALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  V
Sbjct: 361 KTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFV 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV+  +G+   + D+  FIL
Sbjct: 421 IDAAYVKARLGELVEDEDLSRFIL 444


>gi|121590923|ref|ZP_01678245.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80]
 gi|121727614|ref|ZP_01680722.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52]
 gi|147673421|ref|YP_001218163.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae
           O395]
 gi|153213971|ref|ZP_01949164.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587]
 gi|153819926|ref|ZP_01972593.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457]
 gi|153825145|ref|ZP_01977812.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2]
 gi|153829461|ref|ZP_01982128.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39]
 gi|229507278|ref|ZP_04396783.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae BX 330286]
 gi|229513594|ref|ZP_04403058.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TMA 21]
 gi|229521739|ref|ZP_04411157.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TM 11079-80]
 gi|229524652|ref|ZP_04414057.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae bv. albensis VL426]
 gi|229527401|ref|ZP_04416793.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 12129(1)]
 gi|254225407|ref|ZP_04919018.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51]
 gi|254285865|ref|ZP_04960827.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226]
 gi|262170081|ref|ZP_06037770.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC27]
 gi|262191443|ref|ZP_06049630.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae CT 5369-93]
 gi|172047532|sp|A5F4X3|HSLU_VIBC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|121547245|gb|EAX57369.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80]
 gi|121630105|gb|EAX62510.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52]
 gi|124115541|gb|EAY34361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587]
 gi|125622041|gb|EAZ50364.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51]
 gi|126509524|gb|EAZ72118.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457]
 gi|146315304|gb|ABQ19843.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395]
 gi|148875044|gb|EDL73179.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39]
 gi|149741291|gb|EDM55333.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2]
 gi|150424047|gb|EDN15986.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226]
 gi|227014562|gb|ACP10772.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395]
 gi|229335033|gb|EEO00518.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 12129(1)]
 gi|229338233|gb|EEO03250.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae bv. albensis VL426]
 gi|229341333|gb|EEO06337.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TM 11079-80]
 gi|229349471|gb|EEO14427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae TMA 21]
 gi|229354783|gb|EEO19704.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae BX 330286]
 gi|262021489|gb|EEY40201.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae RC27]
 gi|262032683|gb|EEY51234.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae CT 5369-93]
 gi|327485147|gb|AEA79554.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae LMA3894-4]
          Length = 443

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|256823470|ref|YP_003147433.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis
           DSM 16069]
 gi|256797009|gb|ACV27665.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/447 (50%), Positives = 308/447 (68%), Gaps = 17/447 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV ELD++IIGQ+DAKR+VAIALRNRWRR Q+  +LR+E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELDKHIIGQKDAKRSVAIALRNRWRRMQVDEELRNEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD A  ++RE    +V+ 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAFKMLREQEMAKVQN 120

Query: 125 QASINAEERILDAL--------------VGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +A   AEER+LDAL                ++  S+ R+VFRKKLR GE+ DK+I+I+VA
Sbjct: 121 RAHDAAEERVLDALLPPPRKTSDSQWDEQPQSQDSSARQVFRKKLRQGELDDKDIEIDVA 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +  I     PG        L  +F   M   + K+ ++ V+     L  +E+ +LID 
Sbjct: 181 QMAVGIDIMAPPGM-EDMTSQLQSMFQN-MSPSKSKQRKLKVKDALKMLTEEEAAKLIDQ 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   +++ VE +GIVFLDE DK+  R   N  GVSREGVQRDLLPLVEG +V+TKYG 
Sbjct: 239 EELKIKAVEAVEQHGIVFLDEIDKVAKRGEHNDGGVSREGVQRDLLPLVEGCTVNTKYGM 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+ ++ L  QY+
Sbjct: 299 LKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELRALTPDDFKRILTEPDAALTKQYQ 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG  + F E  I+ +A+ A  +N +  +IGARRL TVMER+L++ISF AS+   +
Sbjct: 359 ALLATEGKKIQFDESGIEKIAEYAFQVNESTENIGARRLHTVMERLLDEISFDASE-DNE 417

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ID  YV   + +   + D+  FIL
Sbjct: 418 TLLIDDAYVTKQLSELADDEDLSRFIL 444


>gi|268317431|ref|YP_003291150.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus
           DSM 4252]
 gi|262334965|gb|ACY48762.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus
           DSM 4252]
          Length = 467

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/468 (49%), Positives = 316/468 (67%), Gaps = 34/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PREIV+ELD+YI+GQ++AK+ VAIALRNRWRR   P ++R+E+MP NIL++GPT
Sbjct: 1   MKRELTPREIVAELDKYIVGQEEAKKCVAIALRNRWRRLNAPPEMREEIMPNNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+V+ +IRDLVD+A+N+VRE     V
Sbjct: 61  GVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVDSMIRDLVDIAVNMVREEHEQRV 120

Query: 123 REQASINAEERILDALVGKTATSN------------------------------TREVFR 152
           R++A   AEERILD LV     +                               TR+ FR
Sbjct: 121 RDRARELAEERILDILVPPARPTPRPEMVQGPGFFLQSTATTAADDAEAEARERTRQRFR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL+ GE+ D+EI+IEVA  +  +     P G     +NL ELF   +   R+KK R++V
Sbjct: 181 EKLKAGELDDREIEIEVAADTMPMVQVFGPLGIEEMGVNLQELFGN-LTGRRRKKRRVTV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGV 271
            +    L ++E+ +LIDMD V R++++ VE  GIVF+DE DK+ ARD    G  VSREGV
Sbjct: 240 AEAREILTQEEAQKLIDMDKVTREALERVEQSGIVFIDEIDKVAARDGARGGPDVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRDLLPLVEG SV TKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV LKSL +
Sbjct: 300 QRDLLPLVEGCSVMTKYGMVRTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTE 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT  ++ L+ QY+ L+K EG+ ++FT+ ++  +A++A  +N  V +IGARRL T
Sbjct: 360 EDFYKILTQPKNALLKQYQALLKAEGVEIEFTDAAVRKIAEIAARVNEEVENIGARRLHT 419

Query: 392 VMERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+  +LEDI F   D   +++ +V+DA+ V   +       D+  +IL
Sbjct: 420 VLTTLLEDILFEVPDNVPEDRKIVVDADLVEQRLSGIVQNRDLSQYIL 467


>gi|254451571|ref|ZP_05065008.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 238]
 gi|198265977|gb|EDY90247.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 238]
          Length = 434

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/434 (54%), Positives = 322/434 (74%), Gaps = 2/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI   R+  R++V++
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMREDVKQ 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE R++DA+ G  A   TR++FRKKL+ GE+ +  I++E+AD S+ +   +IPG 
Sbjct: 122 KAQEAAEARVIDAIAGTDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGGMEIPGQ 181

Query: 185 -ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
              +G ++LS +F K  G+   KK  ++V + Y  L+ DE+D+L+D +TV + +++ VE 
Sbjct: 182 PPGMGGMDLSAMFGKAFGARTVKKR-VTVSESYALLVADEADKLLDDETVTKIALESVEQ 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F+
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEEVTVSFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N ++ +IGARRL TVMERV ED+SF+A +     + + A +V  H+
Sbjct: 361 EDGIAALARIAAEVNESIENIGARRLYTVMERVFEDLSFNAPERGGDEIEVSAAFVEEHL 420

Query: 424 GDFPSETDMYHFIL 437
           G     TD+  ++L
Sbjct: 421 GALARSTDLSRYVL 434


>gi|323494457|ref|ZP_08099563.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           brasiliensis LMG 20546]
 gi|323311280|gb|EGA64438.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           brasiliensis LMG 20546]
          Length = 444

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/444 (51%), Positives = 312/444 (70%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+                +SNTR++FRKKLR+G++ DKEI+I+VA   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ ++  +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV+  +GD   + D+  FIL
Sbjct: 421 IDAEYVKAKLGDTIEDEDLSRFIL 444


>gi|71274746|ref|ZP_00651034.1| Heat shock protein HslU [Xylella fastidiosa Dixon]
 gi|71901198|ref|ZP_00683301.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
 gi|71164478|gb|EAO14192.1| Heat shock protein HslU [Xylella fastidiosa Dixon]
 gi|71729042|gb|EAO31170.1| Heat shock protein HslU [Xylella fastidiosa Ann-1]
          Length = 461

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/456 (51%), Positives = 320/456 (70%), Gaps = 25/456 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +   +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 9   SSTMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE  +  VR
Sbjct: 69  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVR 128

Query: 124 EQASINAEERILDAL-------------------VGKTATSNTREVFRKKLRDGEISDKE 164
            Q    AEERILDAL                         S TR  FR+ LR GE+ D+E
Sbjct: 129 TQVEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDRE 188

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+++VA   S   +   P G       L ++FS + G G+ +K +++++   P L+ +E+
Sbjct: 189 IELDVAVNVS--MDIMTPPGMEEMGQQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEA 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEG 281
            +L++ D +   +I+  E  GIVF+DE DK+V R     G  + VSREGVQRDLLPLVEG
Sbjct: 246 AKLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSVSREGVQRDLLPLVEG 305

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF  ILT+ 
Sbjct: 306 SNVSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEP 365

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L  QY+EL+KTEG+ LDFTED+ID +A++A  +N    +IGARRL TV+ER+LE +S
Sbjct: 366 KAALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLS 425

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + D   ++V +DA+YV  H+G+   + D+  +IL
Sbjct: 426 YESPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 461


>gi|240947864|ref|ZP_04752304.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor
           NM305]
 gi|240297826|gb|EER48262.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor
           NM305]
          Length = 440

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 311/443 (70%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+               S+TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNIQESDNSSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   R KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNRTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|213969433|ref|ZP_03397570.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato T1]
 gi|301382644|ref|ZP_07231062.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060628|ref|ZP_07252169.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato K40]
 gi|213925804|gb|EEB59362.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato T1]
          Length = 445

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 317/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDA+YV  H+GD     D+  +IL
Sbjct: 418 APIEIDADYVNSHLGDLAENEDLSRYIL 445


>gi|21232922|ref|NP_638839.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767005|ref|YP_241767.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188990098|ref|YP_001902108.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. B100]
 gi|23821705|sp|Q8P552|HSLU_XANCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|81307009|sp|Q4UYX6|HSLU_XANC8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229486307|sp|B0RNK7|HSLU_XANCB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21114758|gb|AAM42763.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572337|gb|AAY47747.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167731858|emb|CAP50042.1| proteasome-like complex chaperone subunit [Xanthomonas campestris
           pv. campestris]
          Length = 455

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/453 (50%), Positives = 317/453 (69%), Gaps = 22/453 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG
Sbjct: 6   TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR
Sbjct: 66  VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125

Query: 124 EQASINAEERILDAL-----------------VGKTATSNTREVFRKKLRDGEISDKEID 166
            QA   AE+RILDAL                       + TR  FR+ LR+GE+ ++EI+
Sbjct: 126 NQAEERAEDRILDALLPRRSAGIGFDPEAARHEPSAQDNETRIKFRRMLRNGELDEREIE 185

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EVA  +S   +   P G       L ++FS  +G G+ +K +++++   P L+ +E+ +
Sbjct: 186 LEVAVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGGGKSQKRKLTIKAARPLLIEEEAGK 242

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSV 284
           L++ D +   +I+  E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+V
Sbjct: 243 LVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNV 302

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ 
Sbjct: 303 STKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAA 362

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A
Sbjct: 363 LIKQYEALLQTEGVALTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEA 422

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            D   ++V +DA YV   +G+   + D+  +IL
Sbjct: 423 PDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455


>gi|330501484|ref|YP_004378353.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           mendocina NK-01]
 gi|328915770|gb|AEB56601.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           mendocina NK-01]
          Length = 446

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/448 (52%), Positives = 317/448 (70%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             +  SNTR++FRK+LR+G+++DKEIDIEVAD  
Sbjct: 121 RAEDAAEERILDALLPPARQGFGDEPARSEDSNTRQLFRKRLREGQLNDKEIDIEVADAP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  LFS  MG G+KK  ++ V      +  +E+ RL++ + +
Sbjct: 181 MGVEIMTPPGMEEM-TNQLQNLFSS-MGKGKKKSRKLKVADAMKLVRDEEAARLVNEEEL 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 239 KARALEAVEQHGIVFIDEIDKVAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY  L+
Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYSALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 359 KTEGLDIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQNG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + IDA YV  H+G+   + D+  +IL
Sbjct: 419 EPIRIDAAYVNGHLGELAQDEDLSRYIL 446


>gi|1074211|pir||D64072 probable heat shock protein HI0497 - Haemophilus influenzae
           (strain Rd KW20)
          Length = 466

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 21  KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 80

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 81  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 140

Query: 122 VREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 141 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 200

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 201 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 259

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 260 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 319

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 320 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 379

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 380 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 439

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 440 TVNIDAAYVADALGEVVENEDLSRFIL 466


>gi|70733940|ref|YP_257580.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens Pf-5]
 gi|123748567|sp|Q4KJK3|HSLU_PSEF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68348239|gb|AAY95845.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           fluorescens Pf-5]
          Length = 446

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 19/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI + RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMFREQEMIRVRH 120

Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+ +  T            SNTR++FRK+LR+G++ DKEI+IEVA+ 
Sbjct: 121 RAEDAAEERILDALLPQARTGFNSDDAAPAQDSNTRQLFRKRLREGQLDDKEIEIEVAEA 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +    +   P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ + 
Sbjct: 181 AG--VDISAPPGMEEMTNQLQSLFAN-MGKGKRKNRKLKVKEALKLVRDEEASRLVNDEE 237

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 238 LKAKALEAVEQHGIVFIDEIDKVAKRGNAGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 297

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL
Sbjct: 298 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 357

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     
Sbjct: 358 LKTEGLNIEFLPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHS 417

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+ + IDA YV  H+G+     D+  +IL
Sbjct: 418 EEPIRIDAAYVNSHLGELAQNEDLSRYIL 446


>gi|254787489|ref|YP_003074918.1| ATP-dependent protease ATP-binding subunit HslU [Teredinibacter
           turnerae T7901]
 gi|259491380|sp|C5BRL0|HSLU_TERTT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|237683548|gb|ACR10812.1| heat shock protein HslVU, ATPase subunit HslU [Teredinibacter
           turnerae T7901]
          Length = 438

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/439 (51%), Positives = 316/439 (71%), Gaps = 10/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++I+GQQ AK+AVAIALRNRWRR Q+   LR+E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVSELDKFIVGQQAAKKAVAIALRNRWRRMQVDKSLRNEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I + RE    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDGSIKLFREQEMAKCRYR 122

Query: 126 ASINAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AEERILDAL+            S+TR++FRKKLR+G++ DKEI+IE+A T   +  
Sbjct: 123 AMEAAEERILDALLPPARSSGEEQHESSTRQIFRKKLREGDLDDKEIEIEMAATPVGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG        L  +FS  M SG+ +K +++V+K + +L  +E+ +LI+ + +   +I
Sbjct: 183 MAPPGM-EDMTSQLQNMFSS-MSSGKTRKAKLTVKKAFKKLTDEEAAKLINEEELKAQAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           +  E  GIVF+DE DK+  RD+ +G  VSREGVQRDLLPL+EG +VSTK+G I TDHILF
Sbjct: 241 EAAEQNGIVFIDEIDKVTKRDNASGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+ +++L  Q++ L+ TEG+
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALSPEDFERILTEPDASLTEQHQALLATEGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L F++D I  +A+ A ++N    +IGARRL TV+E++LE+ SF+ +D +   +V+DA +
Sbjct: 361 SLAFSKDGIRRIAETAFDVNERTENIGARRLHTVLEKLLEEASFN-TDGESVEIVVDAAF 419

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +G+  +  D+  +IL
Sbjct: 420 VDKQLGELATNEDLSRYIL 438


>gi|28872254|ref|NP_794873.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|32129619|sp|Q87V00|HSLU_PSESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28855508|gb|AAO58568.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331016040|gb|EGH96096.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 445

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 316/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDA+YV  H+GD     D+  +IL
Sbjct: 418 APIEIDADYVNSHLGDLAENEDLSRYIL 445


>gi|296448577|ref|ZP_06890450.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus
           trichosporium OB3b]
 gi|296253917|gb|EFH01071.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus
           trichosporium OB3b]
          Length = 435

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 257/434 (59%), Positives = 340/434 (78%), Gaps = 3/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR+I+GQ+DAKRAVA+ALRNRWRR +L   +R+E++PKNIL++GPTG G
Sbjct: 3   DFSPREIVSELDRFIVGQKDAKRAVAVALRNRWRRLRLEGSMREEVLPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +V++ RR +V  +
Sbjct: 63  KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIMLVKDKRRKDVEAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A + AEER+LDALVG  A+  TR+ FRKKLR GE++DKEI+IE+A + + +  F++P   
Sbjct: 123 AQLAAEERVLDALVGPAASPATRDSFRKKLRAGEMNDKEIEIEIAQSGAQMPMFELPNMP 182

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           GASV   ++ ++F K    GR K+ +M V+  +  L+ +ES++LID +   R++I  VEN
Sbjct: 183 GASVSAFSIGDIFGKAF-QGRAKRRKMQVKDAHAPLLAEESEKLIDQEESVREAIAEVEN 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DKI AR+   G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA
Sbjct: 242 NGIVFLDELDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+TE+ L  QY  L+ TEG+ LDF 
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELASLDEEDFRRILTETEACLTKQYVALLATEGVALDFA 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             ++DA+A VAV +NS+V +IGARRLQTVMERVL+++SFSASD   +TV ID +YV  HI
Sbjct: 362 PSAVDAIARVAVQVNSSVENIGARRLQTVMERVLDEVSFSASDRAGETVTIDGDYVEKHI 421

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 422 GDLAKNRDLSRFIL 435


>gi|261254140|ref|ZP_05946713.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           orientalis CIP 102891]
 gi|260937531|gb|EEX93520.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           orientalis CIP 102891]
          Length = 444

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/444 (51%), Positives = 312/444 (70%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEERILDAL+               ++SNTR+VFRKKLR+G++ DKEI+I+VA   
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIEIDVAAPQ 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +F   +    KKK ++ ++  +  L  +E+ +L++ + +
Sbjct: 183 MGVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAFKALTEEEAAKLVNQEEL 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + T
Sbjct: 241 KEQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILF+ASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LM
Sbjct: 301 DHILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALM 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + ++FTE+ I  +A+ A  +N T  +IGARRL TVMER++++ISF A+D     + 
Sbjct: 361 KTEEVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDAEYV+  +GD   + D+  FIL
Sbjct: 421 IDAEYVKAKLGDTIEDEDLSRFIL 444


>gi|258620455|ref|ZP_05715493.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM573]
 gi|258625668|ref|ZP_05720547.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM603]
 gi|262166683|ref|ZP_06034420.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM223]
 gi|262170394|ref|ZP_06038072.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           MB-451]
 gi|258581906|gb|EEW06776.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM603]
 gi|258587334|gb|EEW12045.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM573]
 gi|261891470|gb|EEY37456.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           MB-451]
 gi|262026399|gb|EEY45067.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus
           VM223]
          Length = 443

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I V     
Sbjct: 123 AEELAEERVLDALLPPARDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVTAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|332308411|ref|YP_004436262.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175740|gb|AEE24994.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 443

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+                 TR+ FRKKLR+G++ DKEI+I+VA     
Sbjct: 123 AEEAAEERILDVLLPPAENQWGEKEKNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +   +KKK ++ +++ +  L+ +E+ RL++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQN-LSGSQKKKKKLKIKEAFKLLIEEEAARLVNQEDLKA 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           ++I+ +E  GIVF+DE DKI  R+ S +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 NAIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+K
Sbjct: 301 HILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAEDFIRILTEPNASLTEQYIALLK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I+ +A  A  +N    +IGARRL TVMER++E+ISF AS+   + + +
Sbjct: 361 TEGVEVEFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKNGEQLTV 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+       D+  FIL
Sbjct: 421 DAKYVNDHLEMLVENEDLSRFIL 443


>gi|297581511|ref|ZP_06943434.1| protease HslVU [Vibrio cholerae RC385]
 gi|297534349|gb|EFH73187.1| protease HslVU [Vibrio cholerae RC385]
          Length = 443

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDAQKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|229844343|ref|ZP_04464483.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
 gi|229812592|gb|EEP48281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
          Length = 444

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +T+ I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|227082790|ref|YP_002811341.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2]
 gi|298500508|ref|ZP_07010312.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK
           757]
 gi|254802322|sp|C3LSA3|HSLU_VIBCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|227010678|gb|ACP06890.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2]
 gi|297540677|gb|EFH76734.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK
           757]
          Length = 443

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREG QRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGGQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|109900490|ref|YP_663745.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           atlantica T6c]
 gi|123064029|sp|Q15N47|HSLU_PSEA6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109702771|gb|ABG42691.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoalteromonas
           atlantica T6c]
          Length = 443

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E    +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+                 TR+ FRKKLR+G++ DKEI+I+VA     
Sbjct: 123 AEEAAEERILDVLLPPAENQWGEKEQNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +   +KKK ++ +++ +  L+ +E+ RL++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQN-LSGSQKKKKKLKIKEAFKLLIEEEAARLVNQEDLKA 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           ++I+ +E  GIVF+DE DKI  R+ S +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 241 NAIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+K
Sbjct: 301 HILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAGDFIRILTEPNASLTEQYIALLK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ +DFT+D I+ +A  A  +N    +IGARRL TVMER++E+ISF AS+   + + +
Sbjct: 361 TEGVDVDFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKSGEQLTV 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+       D+  FIL
Sbjct: 421 DAKYVNDHLEMLVENEDLSRFIL 443


>gi|299068385|emb|CBJ39609.1| ATPase component of the HslUV protease, molecular chaperone
           [Ralstonia solanacearum CMR15]
          Length = 444

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/446 (51%), Positives = 312/446 (69%), Gaps = 13/446 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+   RES   +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120

Query: 123 REQASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           R +A   AE+R+LD L            +   SN R+VFRKKLR+G++ DKEI++EVA  
Sbjct: 121 RVKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVAAG 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    +  +F+  +G G+K + +M V + +  L+ +E+ +L++ + 
Sbjct: 181 MPGMDIMGPPGMEEM-TEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +I  VE  GIVFLDE DKI +R    G G VSR+GVQRDLLPLVEG++VSTKYG I
Sbjct: 239 LKHKAIANVEQNGIVFLDEIDKITSRSEHGGGGEVSRQGVQRDLLPLVEGTTVSTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +++P+DL+PE+QGRFP+RV L SL+  DF+ ILT T+++L  QY+ 
Sbjct: 299 KTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTE + L F +D I  LA++A ++N  V +IGARRL TVMER+LED+SF A     +T
Sbjct: 359 LMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGET 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   + +     D+  ++L
Sbjct: 419 VTIDATYVDSRLNELAGSEDLSRYVL 444


>gi|71278515|ref|YP_271019.1| ATP-dependent protease ATP-binding subunit HslU [Colwellia
           psychrerythraea 34H]
 gi|123760948|sp|Q47W03|HSLU_COLP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71144255|gb|AAZ24728.1| heat shock protein HslVU, ATPase subunit HslU [Colwellia
           psychrerythraea 34H]
          Length = 443

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 305/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD +I+GQ DAKRAVAIALRNRWRR QL  DLR+E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDSHIVGQSDAKRAVAIALRNRWRRMQLDKDLRNEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+AI +V+ES  D V+  
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADMAIKMVKESEMDRVKHL 122

Query: 126 ASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+            +  SNTR++FRKKLR+G++ DKEI++++A     
Sbjct: 123 AEEAAEERILDVLLPPARDGFGNDEKSDDSNTRQIFRKKLREGKLDDKEIELDLAAPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG        L  +F   M S +  K ++ ++     L  +E+ ++++ D + +
Sbjct: 183 VEIMAPPGM-EDMTSQLQNMFQN-MSSEKTNKRKLKIKDALKALQEEEAAKIVNQDDIKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I  VE  GIVF+DE DKI  R DS  G  VSREGVQRDLLPLVEGS+VSTK+G I TD
Sbjct: 241 KAIDAVEQNGIVFIDEIDKICKRADSSGGGDVSREGVQRDLLPLVEGSTVSTKHGMIKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF +++P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QY  L+ 
Sbjct: 301 HILFIASGAFQMTKPSDLIPELQGRLPIRVELQALTADDFVRILTEPFASLTEQYIALLA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT+D I A+AD A  +N T  +IGARRL T+MER++ED+SF+A     +T+ I
Sbjct: 361 TEGVSVTFTDDGIKAIADSAWQVNETTENIGARRLHTMMERLVEDLSFNADQRSGETISI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + +   + D+  FIL
Sbjct: 421 DQAYVTKILSEVVKDEDLSRFIL 443


>gi|121533768|ref|ZP_01665595.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus
           carboxydivorans Nor1]
 gi|121307759|gb|EAX48674.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus
           carboxydivorans Nor1]
          Length = 462

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/463 (47%), Positives = 315/463 (68%), Gaps = 31/463 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P++IV++L++YI+GQ +AK++VA+ALRNRWR +QLPA+L++E++PKNIL++GPTGV
Sbjct: 1   MELTPKQIVAQLNKYIVGQHEAKKSVAVALRNRWRSKQLPAELKEEIIPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTEIGYVGR+VE ++RDLV+ AI +V++ +  EV +
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEIGYVGRDVESMVRDLVETAIRMVKQEKMLEVND 120

Query: 125 QASINAEERILDALVGKTATSNT------------------------------REVFRKK 154
           +A   A+ERI+D                                         RE +RK+
Sbjct: 121 RARELADERIIDYFYPTVKKEPPRNPFEILFTGGISQQKEQQPVSETTGHDVGREWWRKR 180

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L+ GE+ D+ I+I V D S  +       G     +N+ ++   ++   ++KK +++V  
Sbjct: 181 LKQGELEDELIEITVEDNSHPMVGMFAGAGIEEMGINIQDMLGSLL-PKKQKKRKVTVAN 239

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
                 ++E+ +LIDMD V  ++I   ENYGI+FLDE DKI  R    G  VSREGVQRD
Sbjct: 240 ARKIFTQEEAQKLIDMDEVIAEAIYQAENYGIIFLDEIDKIAGRGHSTGPDVSREGVQRD 299

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF
Sbjct: 300 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELTSLSKEDF 359

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           R ILT+  + LI QY  L+ TEGI ++FTED+ID LA++A  +N+   +IGARRL T++E
Sbjct: 360 RQILTEPANALIKQYTGLLATEGIKIEFTEDAIDELAEIACKVNAQTENIGARRLHTILE 419

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED++F A DL EK +VID +YV+  +G    + D+ H+IL
Sbjct: 420 KLLEDLAFEAPDLTEKHIVIDRQYVQSKLGHIIVDQDLSHYIL 462


>gi|254438704|ref|ZP_05052198.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 307]
 gi|198254150|gb|EDY78464.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter
           antarcticus 307]
          Length = 434

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 240/434 (55%), Positives = 323/434 (74%), Gaps = 2/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ DAKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQSDAKRAVAVALRSRWRRRQLDDDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI   R+  RD+V++
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMRDDVKQ 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE R++DA+ GK A   TR++FRKKL+ GE+ +  I++E+AD S+ + N +IPG 
Sbjct: 122 KAQEAAEARVIDAIAGKDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGNMEIPGQ 181

Query: 185 AS-VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
              +G ++L  +F K  G    KK  ++V + Y  L+ DE+D+L+D +TV + ++  VE 
Sbjct: 182 PPTLGGMDLGAMFGKAFGPRTMKKR-VTVSESYALLIADEADKLLDDETVTKIALDSVEQ 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+       G  VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGA
Sbjct: 241 NGIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY  LM TE + + F+
Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEDVTVSFS 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I ALA +A  +N +V +IGARRL TVMERV ED+SF+A D     + ++A +V  H+
Sbjct: 361 EDGIAALAHIAAEVNESVENIGARRLYTVMERVFEDLSFNAPDRGGDEIEVNAAFVEQHL 420

Query: 424 GDFPSETDMYHFIL 437
           G+    TD+  ++L
Sbjct: 421 GELARSTDISRYVL 434


>gi|28897023|ref|NP_796628.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153840198|ref|ZP_01992865.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus AQ3810]
 gi|260362284|ref|ZP_05775251.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus K5030]
 gi|260897599|ref|ZP_05906095.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260899529|ref|ZP_05907924.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|31340157|sp|Q87T21|HSLU_VIBPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28805231|dbj|BAC58512.1| protease HslVU, ATPase subunit HslU [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746140|gb|EDM57270.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio
           parahaemolyticus AQ3810]
 gi|308087499|gb|EFO37194.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308108759|gb|EFO46299.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308111318|gb|EFO48858.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio
           parahaemolyticus K5030]
          Length = 443

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               TSNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EAAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++      VI
Sbjct: 361 TEDVDIEFTEDGITRIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +GD   + D+  FIL
Sbjct: 421 DAAYVQARLGDTIEDEDLSRFIL 443


>gi|330938647|gb|EGH42213.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 445

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/448 (51%), Positives = 318/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+ +T 
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINETV 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 181 G--VDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|325577182|ref|ZP_08147666.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392]
 gi|325160764|gb|EGC72885.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392]
          Length = 444

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 306/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAK 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AE+RILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDTAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  +F   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSMFQS-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF AS++  +TV I
Sbjct: 362 TEGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVIEALGEVIENEDLSRFIL 444


>gi|260770842|ref|ZP_05879771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           furnissii CIP 102972]
 gi|260614079|gb|EEX39269.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           furnissii CIP 102972]
          Length = 443

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/443 (51%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+                S+TR+ FRKKLR+G++ DKEI++ VA    
Sbjct: 123 AEEQAEERILDALLPPARDAWGEAEHNDTASSTRQTFRKKLREGKLDDKEIEVNVAVAQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +G   KKK ++ ++  +  L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVTTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYMALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TVMER++++ISF A++    ++ I
Sbjct: 361 TEEVDIAFTEDGIKQIADAAWQVNETTENIGARRLHTVMERLMDEISFDATEKAGASLTI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D+ YVR  +G+   + D+  FIL
Sbjct: 421 DSAYVRAKLGELVEDEDLSRFIL 443


>gi|325922228|ref|ZP_08184014.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri
           ATCC 19865]
 gi|325547298|gb|EGD18366.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri
           ATCC 19865]
          Length = 447

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/450 (50%), Positives = 319/450 (70%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK
Sbjct: 1   MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE  +  VR QA
Sbjct: 61  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120

Query: 127 SINAEERILDALVGKTA-----------------TSNTREVFRKKLRDGEISDKEIDIEV 169
              AE+RILDAL+ + A                  + TR  FR+ LR+GE+ ++EI+++V
Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARHEPSSQDNETRIKFRRMLRNGELDEREIELDV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  +S   +   P G       L ++FS  +GSG+ +K +++++   P L+ +E+ +L++
Sbjct: 181 AVNAS--MDIMTPPGMEEMGQQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLVN 237

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I+  E +GIVF+DE DK+  R      G  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 238 EDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSTGGDVSREGVQRDLLPLVEGSNVSTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF  ILT+ ++ LI 
Sbjct: 298 YGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALIK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L++TEG+ L F  D++D LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 358 QYEALLQTEGVNLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPDR 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   +G+   + D+  +IL
Sbjct: 418 DGQSVSVDAAYVDAQLGELVQDPDLSRYIL 447


>gi|126724539|ref|ZP_01740382.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126705703|gb|EBA04793.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 435

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/435 (56%), Positives = 332/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIVSELDR++IGQ DAKRAVA+ALRNRWRR QL  DL+ E+ PKNIL++GPTGV
Sbjct: 2   TNLTPREIVSELDRFVIGQNDAKRAVAVALRNRWRRNQLSDDLKAEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI++ RE+ R+EV  
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDSAISMTRENMREEVNA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
            A   AEER+LDA+ G+ +   TR++FR+KLR GE+   EI+++VA+T+     FDIPG 
Sbjct: 122 NARAAAEERVLDAIAGENSREGTRDMFRRKLRAGELDSTEIELDVAETAKGSPLFDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G+ +G+LNL ++F K +G    +K +M+V + Y  L+ +E+D+L+D +TV R ++  VE
Sbjct: 182 PGSQMGMLNLQDMFGKALGQQTSRK-KMTVAESYDLLIGEEADKLLDDETVTRLAMASVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASG
Sbjct: 241 QDGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L++L ++DF  ILT+T++ L LQY  LM TE + ++F
Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTENDFVRILTETDNALTLQYTALMATEEVAVEF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ I ALA +A ++N +V +IGARRL TV+ERV ED+SF+A D   +TV +DA +V  H
Sbjct: 361 TDEGIAALAKIAADVNESVENIGARRLYTVLERVFEDLSFNAPDQNGETVKVDAAFVDKH 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELTKSADLSRYVL 435


>gi|262401961|ref|ZP_06078526.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC586]
 gi|262351933|gb|EEZ01064.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           RC586]
          Length = 443

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G++SDKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPARDAWGQAEQKEDNSSTRQVFRKKLREGQLSDKEIEINVATPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ IL++ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILSEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++   +  VI
Sbjct: 361 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +G+   + D+  FIL
Sbjct: 421 DAAYVKARLGELVEDEDLSRFIL 443


>gi|145630324|ref|ZP_01786105.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|144984059|gb|EDJ91496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
          Length = 444

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|16272441|ref|NP_438655.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae Rd KW20]
 gi|1170386|sp|P43773|HSLU_HAEIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|11513568|pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513569|pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513570|pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513571|pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513572|pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513573|pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513586|pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513587|pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513588|pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513589|pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513590|pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513591|pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
 gi|11513596|pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
 gi|21465932|pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465933|pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465934|pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465935|pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465936|pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465937|pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465950|pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465951|pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465952|pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465953|pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465954|pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|21465955|pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
 gi|1573474|gb|AAC22154.1| heat shock protein (hslU) [Haemophilus influenzae Rd KW20]
          Length = 444

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|68249096|ref|YP_248208.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae 86-028NP]
 gi|145638588|ref|ZP_01794197.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|81336498|sp|Q4QN49|HSLU_HAEI8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68057295|gb|AAX87548.1| HslU, ATP-dependent chaperone of the HslUV protease [Haemophilus
           influenzae 86-028NP]
 gi|145272183|gb|EDK12091.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|309750090|gb|ADO80074.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2866]
          Length = 444

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 308/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|88813054|ref|ZP_01128296.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231]
 gi|88789687|gb|EAR20812.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231]
          Length = 441

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/441 (50%), Positives = 303/441 (68%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QMTPREIVQELDKYIIGQARAKQAVAIALRNRWRRMQVDEALRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAGAPFIK+E TKFTE+GYVGR+VE +IRDL D+A+ + R+   ++V   
Sbjct: 63  KTEIARRLAKLAGAPFIKIEATKFTEVGYVGRDVESMIRDLADIAVKMTRQQEMEKVTTA 122

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+ +         +   TR+  RKKLR+G++  +EI+IEV      + 
Sbjct: 123 ALDAAEERILDTLLPRARGFGTEDESADATRQKMRKKLREGDLDAREIEIEVRSAPIGME 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F   +   R +  RM ++  +  L  +E  +L++ + V R +
Sbjct: 183 IMAPPGMEEM-TGQLQNMFQN-LTGERTRTRRMKIKDAWRVLREEEGAKLVNEEEVKRKA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++ VE  GIVFLDE DK+  R   G+G+ VSREGVQRDLLPLVEGS+VSTK+G INT+HI
Sbjct: 241 LEAVEQNGIVFLDEIDKVAKRGEHGSGMDVSREGVQRDLLPLVEGSTVSTKHGMINTNHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L  L   DF  ILT+ +++L+ QY+ L+ TE
Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRLPIRVELDPLTVDDFVRILTEPDASLVRQYQALIATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+FT++ +D +A+VA  +N    +IGARRL TVMER+LE +S+ A D  E+ V ID 
Sbjct: 361 GVRLEFTKEGVDRIAEVAWEVNERTENIGARRLHTVMERLLETVSYEAPDRAEELVRIDD 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+ D   + D+  +IL
Sbjct: 421 HYVDEHLADLARDQDLSRYIL 441


>gi|148825226|ref|YP_001289979.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           influenzae PittEE]
 gi|166221588|sp|A5U9Z5|HSLU_HAEIE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|148715386|gb|ABQ97596.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittEE]
          Length = 444

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFCVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|145628877|ref|ZP_01784677.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
 gi|144979347|gb|EDJ89033.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
          Length = 444

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 308/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVVDALGEVVENEDLSRFIL 444


>gi|302132701|ref|ZP_07258691.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 443

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/446 (51%), Positives = 316/446 (70%), Gaps = 18/446 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRHRA 120

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+    + 
Sbjct: 121 EDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEI--NEAV 178

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +  
Sbjct: 179 GVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELKV 237

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + TDH
Sbjct: 238 KALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTDH 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+KT
Sbjct: 298 ILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLKT 357

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----T 411
           EG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL        
Sbjct: 358 EGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDAAP 417

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + IDA+YV  H+GD     D+  +IL
Sbjct: 418 IEIDADYVNSHLGDLAENEDLSRYIL 443


>gi|144898075|emb|CAM74939.1| heat shock protein HslVU, ATPase subunit HslU [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 442

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/437 (58%), Positives = 339/437 (77%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTGVGK
Sbjct: 6   FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLPDALREEVLPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV++AI ++RE  R +V  +A
Sbjct: 66  TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEIAIGMMRERLRKQVVPKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183
            + AEER+LD LVG+TA+++TR+ FRK LR+G +  +E++I+VAD+ +  + +FDIPG  
Sbjct: 126 ELAAEERLLDVLVGETASADTRQKFRKMLREGALDGREVEIQVADSGAGAMPSFDIPGMP 185

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G+ VG++NLS++  K  G GR K  +MSV      L+ +ESD+L+D D V +D+I  VEN
Sbjct: 186 GSQVGMINLSDMLGKAFGGGRTKPRKMSVPDALAALLAEESDKLLDQDAVVKDAIWAVEN 245

Query: 244 YGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           +GIVFLDE DKI AR S +  G  VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIAS
Sbjct: 246 HGIVFLDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVSTKHGNVKTDHILFIAS 305

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L++L + DF  ILT+ E++LI QY  L+ TE ++L 
Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELQALTRDDFVRILTEPEASLIKQYVALLGTEEVLLK 365

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           F + +I A+AD+A  +N +V +IGARRL TV+ER+LE+ISF+A D      + I A  V 
Sbjct: 366 FDDGAIAAIADLAAEINRSVENIGARRLHTVLERLLEEISFTAPDQSPGTEIAITAAMVN 425

Query: 421 LHIGDFPSETDMYHFIL 437
             +G    + D+  FIL
Sbjct: 426 ERVGALAKKADLAKFIL 442


>gi|309972350|gb|ADO95551.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2846]
          Length = 443

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/442 (52%), Positives = 305/442 (69%), Gaps = 11/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+                 TR+ FRKKLR+G++ DKEI+I+V+   S 
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVESNDNNSTRQTFRKKLREGQLDDKEIEIDVSAGVSM 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + +
Sbjct: 183 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 362 EGVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 422 ATYVADALGEVVENEDLSRFIL 443


>gi|330964752|gb|EGH65012.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 445

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KVKALEGVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDA+YV  H+G+     D+  +IL
Sbjct: 418 APIEIDADYVNSHLGELAENEDLSRYIL 445


>gi|254229426|ref|ZP_04922841.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25]
 gi|262392523|ref|YP_003284377.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           Ex25]
 gi|151937997|gb|EDN56840.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25]
 gi|262336117|gb|ACY49912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp.
           Ex25]
          Length = 443

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EAAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VI
Sbjct: 361 TEDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +GD   + D+  FIL
Sbjct: 421 DAAYVKERLGDTIEDEDLSRFIL 443


>gi|66043661|ref|YP_233502.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae B728a]
 gi|289672014|ref|ZP_06492904.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae FF5]
 gi|302189054|ref|ZP_07265727.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. syringae 642]
 gi|81308607|sp|Q4ZZF8|HSLU_PSEU2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|63254368|gb|AAY35464.1| Heat shock protein HslU [Pseudomonas syringae pv. syringae B728a]
 gi|330899264|gb|EGH30683.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330971748|gb|EGH71814.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330977164|gb|EGH77122.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 445

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 317/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|269959684|ref|ZP_06174064.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi
           1DA3]
 gi|269835607|gb|EEZ89686.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi
           1DA3]
          Length = 443

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+               TSNTR++FRKKLR+G++ DKEIDI+VA    
Sbjct: 123 AEEQAEERILDTLLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIDIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 ESAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VI
Sbjct: 361 TENVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +A YV+  +GD   + D+  FIL
Sbjct: 421 NAAYVKDRLGDTIEDEDLSRFIL 443


>gi|330951292|gb|EGH51552.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae Cit 7]
          Length = 445

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 317/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAINPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|225850153|ref|YP_002730387.1| ATP-dependent protease ATP-binding subunit HslU [Persephonella
           marina EX-H1]
 gi|254802313|sp|C0QUM2|HSLU_PERMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225645468|gb|ACO03654.1| ATP-dependent protease HslVU, ATPase subunit [Persephonella marina
           EX-H1]
          Length = 448

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/449 (50%), Positives = 323/449 (71%), Gaps = 13/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+L  + +P++IV ELD+YI+GQ++AK+AVAIALRNRWRR +LP DLRDE++PKNIL++G
Sbjct: 1   MQLREDLTPKQIVEELDKYIVGQKEAKKAVAIALRNRWRRHKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIR+L + +  +V+  + +
Sbjct: 61  PTGVGKTEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRELAEASFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIE 168
           +VRE+A   AEE+ILD LV                TS  RE FR+ LR+GE+ ++ ++I+
Sbjct: 121 KVREKAKEIAEEKILDYLVPMRVKRYGTLETFEEETSPAREKFRQMLRNGELDERTVEID 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V +    +    I  G       L +LFS  +   ++K+ +M+V++    L + E+++LI
Sbjct: 181 VEEKGVSVVGGVIAPGLEDIENQLKDLFSS-LAPTKRKRRKMTVREAMRVLEQQEAEKLI 239

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           DMD V  +++   EN+GIVF+DE DK+  + +G+   VSREGVQRDLLP+VEG++VSTKY
Sbjct: 240 DMDEVASEAVYRAENFGIVFIDEIDKVAGKSTGSSPDVSREGVQRDLLPIVEGTTVSTKY 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF  ILT  ++ LI Q
Sbjct: 300 GPVKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELQPLTKDDFVKILTQPKNALIKQ 359

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK LM TEG+ ++FT+D+I+A+A++A  +N    +IGARRL T++ER++ED SF A DL+
Sbjct: 360 YKALMATEGVDIEFTDDAIEAIAEIAEQVNEKTENIGARRLHTILERIMEDYSFEAPDLK 419

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + ++ID + +R  +GD     D+  +IL
Sbjct: 420 GQHIIIDEKVIRSKLGDIIQSEDLTRYIL 448


>gi|258590896|emb|CBE67191.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone; heat shock protein [NC10 bacterium 'Dutch
           sediment']
          Length = 451

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/450 (49%), Positives = 319/450 (70%), Gaps = 19/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD+YIIGQ++AKRAVAIALRNRWRRQ+LPA+LRDE+ PKNI+++GPTGVG
Sbjct: 3   QLTPRQIVAELDKYIIGQKEAKRAVAIALRNRWRRQKLPAELRDEVAPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE +K+TE+GYVGR+VE ++RDL ++A+++V+  R   V+E+
Sbjct: 63  KTEIARRLAKLVDAPFIKVEASKYTEVGYVGRDVESMVRDLTELAVDMVKAERIKGVQER 122

Query: 126 ASINAEERILDALVGK------------------TATSNTREVFRKKLRDGEISDKEIDI 167
           A   AEER+LD L+                    T+ + TRE  RK+L +G++ D+ +++
Sbjct: 123 ARELAEERLLDLLLPVSRMPTTPGVEQTLDASTVTSAAETREKLRKRLHEGKLDDRTVEL 182

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV D +  +       G     +N+ E+   ++   R K+ ++ +++    L ++E+D+L
Sbjct: 183 EVKDRAMPMVEIFSGAGMEGMDINMKEMLGSLLPQ-RTKRRKVKIREAQRILAQEEADKL 241

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ID+D V  ++++ VE+ GIVFLDE DKI  RDSG+G  VSR+GVQRDLLP+VEG +V+TK
Sbjct: 242 IDVDEVRSEAVRRVEDSGIVFLDEIDKIAGRDSGHGPDVSRQGVQRDLLPIVEGCTVNTK 301

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF  ILT+ ++ LI 
Sbjct: 302 YGLVRTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELASLTQDDFVRILTEPQNALIK 361

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++TE + LDFTED+I  LA  A  +N    +IGARRL T++ER+L++ISF A  +
Sbjct: 362 QYTALLETEEVTLDFTEDAIQELAATACAVNQATENIGARRLYTILERLLDEISFEAPAM 421

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q   V I+A YVR  + +     D+  +IL
Sbjct: 422 QGAQVTINAAYVRERLQEIVKSEDLSRYIL 451


>gi|330961997|gb|EGH62257.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 445

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 318/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+            +++ SNTR++FRK+LR+G++ DKEI+I++ +T 
Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPVQSSDSNTRQLFRKRLREGQLDDKEIEIDINETV 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 181 G--VDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-- 411
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLQIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISQDA 417

Query: 412 --VVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|326315560|ref|YP_004233232.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372396|gb|ADX44665.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 438

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/438 (52%), Positives = 309/438 (70%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPGLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122

Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILDAL+       + A S  R+VFRKKLR+G++ DKEI+I++AD    +   
Sbjct: 123 AEDAAEDRILDALIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDLADARPQLEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L  +FS+ MG  R+K  ++ + +    L  +E+ +L++ + V   ++Q
Sbjct: 183 -GPQGMEEMAEQLRGMFSQ-MGQERRKTRKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI
Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ TEG+ 
Sbjct: 301 ASGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F  + I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV IDA YV
Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRIDAAYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +       D+  +IL
Sbjct: 421 DGRLASLSQNEDLSRYIL 438


>gi|319897987|ref|YP_004136184.1| molecular chaperone and atpase component of hsluv protease
           [Haemophilus influenzae F3031]
 gi|317433493|emb|CBY81876.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3031]
          Length = 444

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +T+ I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|285019333|ref|YP_003377044.1| molecular chaperone and ATPase component of hsluv protease
           [Xanthomonas albilineans GPE PC73]
 gi|283474551|emb|CBA17052.1| probable molecular chaperone and atpase component of hsluv protease
           protein [Xanthomonas albilineans]
          Length = 458

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/450 (50%), Positives = 308/450 (68%), Gaps = 22/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP  +RDE+MPKNIL++GPTGVGK
Sbjct: 12  MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPDAMRDEVMPKNILMIGPTGVGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA LA APF+KVE T+FTE+GYVG++VEQI+RDL D A+ + RE  +  VR QA
Sbjct: 72  TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIVRDLADTAVKLYREQAKTRVRTQA 131

Query: 127 SINAEERILDAL-----------------VGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
              AEERILDAL                       S+TR  FR+ L  GE+ ++EI+++V
Sbjct: 132 EERAEERILDALLPRRSVGIGFDPDAVRQEPSAQDSDTRSKFRRMLHAGELDEREIELDV 191

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               S   +   P G       L  +FS  +G G+ +  R++++   P L+ +E+ +L++
Sbjct: 192 PINVS--MDIMTPPGMEEMGQQLRHMFSN-LGGGKSQSRRLTIKAARPLLIEEEAGKLVN 248

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTK 287
            D V   +I   E +GIVF+DE DK+  R     +G  VSREGVQRDLLPLVEGS+VSTK
Sbjct: 249 EDDVRAAAIDACEQHGIVFIDEIDKVAKRGEAGASGGDVSREGVQRDLLPLVEGSNVSTK 308

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF  ILT+ ++ LI 
Sbjct: 309 YGTVRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELSALSKDDFIRILTEPKAALIK 368

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ L F++D+I  LA++A  +N    +IGARRL TV+ER+L+ +S+ A D 
Sbjct: 369 QYEALLLTEGVSLSFSDDAIVRLAEIAFLVNERQENIGARRLHTVLERLLDSLSYEAPDR 428

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V +DA YV   + +   + D+  +IL
Sbjct: 429 DGESVTVDAGYVDARLSELVQDPDLSRYIL 458


>gi|257482922|ref|ZP_05636963.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289624152|ref|ZP_06457106.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647387|ref|ZP_06478730.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298485095|ref|ZP_07003191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160347|gb|EFI01372.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322074|gb|EFW78170.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330825|gb|EFW86799.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330865705|gb|EGH00414.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330872045|gb|EGH06194.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330984743|gb|EGH82846.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331009574|gb|EGH89630.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 445

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/448 (51%), Positives = 315/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|83944946|ref|ZP_00957312.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851728|gb|EAP89583.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 434

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 255/434 (58%), Positives = 339/434 (78%), Gaps = 2/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIV ELDR+IIGQ DAK+AVAIALRNRWRR+ LP  LR+E+ PKNIL++GPTGV
Sbjct: 2   TEFSPREIVHELDRHIIGQGDAKKAVAIALRNRWRRKHLPEGLREEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ I RDLV+VAI++VRE +R+EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIARDLVEVAISLVREKKREEVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE-VADTSSDISNFDIPG 183
           +A   AE+R+LDALVGK A S+TRE FRKKL  GE+ DKEI+IE + D+++     D+PG
Sbjct: 122 KAHGAAEQRVLDALVGKDAGSSTREAFRKKLLSGELDDKEIEIEIIDDSANPFQGMDLPG 181

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             S+G++NL ++  K    GR K +R +V++ Y  L+ +E+D+L+D + +  ++I++ EN
Sbjct: 182 MGSMGVINLGDMLGKGF-GGRPKTLRTTVKEAYEPLINEEADKLLDENQIQSEAIRLAEN 240

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGA
Sbjct: 241 EGIVFLDEIDKVSARADARGADVSREGVQRDLLPLIEGATVSTKYGPMKTDHVLFIASGA 300

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DLLPE+QGR P+RV L++LN+ DFR ILT+ E++LI QY  LMKTEG  L F 
Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELQALNRDDFRAILTEPEASLITQYVALMKTEGFELSFD 360

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           + +IDA+AD A  +N++V +IGARRLQT++E+V E+IS++ASD   +++ IDA+YV   +
Sbjct: 361 DSAIDAIADFAAEVNASVENIGARRLQTILEKVCEEISYTASDRSGESLAIDADYVSDRV 420

Query: 424 GDFPSETDMYHFIL 437
           G      D+  FIL
Sbjct: 421 GGLARNADLSKFIL 434


>gi|83950789|ref|ZP_00959522.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
 gi|83838688|gb|EAP77984.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
          Length = 435

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 244/435 (56%), Positives = 331/435 (76%), Gaps = 3/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLSEDLRDEVFPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI + R+  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIAMTRDHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEER++ A+ G+ A   TRE+FR+KL+ GE+ D  I++++ADTS+     DIPG 
Sbjct: 122 KAHHAAEERVISAIAGEDAREGTREMFRQKLKKGELDDTMIELDLADTSNPFGMMDIPGQ 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  +G+LNL ++F K +  GR K+ RMSV + Y  L+ +E+D+L+D +TV R +I+ VE
Sbjct: 182 PGGQMGMLNLGDMFGKAL-GGRTKRQRMSVAESYEILIGEEADKLLDDETVTRAAIEAVE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 241 ENGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L++L + DF  ILT+T++ L  QY+ LM TE + + F
Sbjct: 301 AFHVAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYEALMSTENLTVRF 360

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED I A+A +A  +N +V +IGARRL TVMERV E++SF A D    ++ +DA +V  +
Sbjct: 361 TEDGIAAIARIAAEVNRSVENIGARRLYTVMERVFEELSFVAPDRSGDSITVDAGFVEDN 420

Query: 423 IGDFPSETDMYHFIL 437
           +G+     D+  ++L
Sbjct: 421 LGELARSADLSRYVL 435


>gi|156973044|ref|YP_001443951.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|166221616|sp|A7MWJ3|HSLU_VIBHB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|156524638|gb|ABU69724.1| hypothetical protein VIBHAR_00723 [Vibrio harveyi ATCC BAA-1116]
          Length = 443

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ  AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+               TSNTR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 ESAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYIALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VI
Sbjct: 361 TESVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           +A YV+  +GD   + D+  FIL
Sbjct: 421 NAAYVKDRLGDTIEDEDLSRFIL 443


>gi|145632762|ref|ZP_01788496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145634507|ref|ZP_01790216.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|144986957|gb|EDJ93509.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145268052|gb|EDK08047.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
          Length = 444

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 308/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQVDAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGMS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|229846582|ref|ZP_04466690.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|229810675|gb|EEP46393.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
          Length = 444

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/443 (53%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|260772033|ref|ZP_05880950.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           metschnikovii CIP 69.14]
 gi|260612900|gb|EEX38102.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           metschnikovii CIP 69.14]
          Length = 443

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ+ AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQEKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+               +S TR+VFRKKLR+G++ DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPARDAWGESEKTEQSSTTRQVFRKKLREGQLDDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKLKIKEALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L+  DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++     +VI
Sbjct: 361 TEQVDISFTEDGIKQIAEAAWQVNESTENIGARRLHTVMERLMDEISYEATERPGSQMVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + +   + D+  FIL
Sbjct: 421 DGDYVHDRLSELVEDEDLSRFIL 443


>gi|260580440|ref|ZP_05848268.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae RdAW]
 gi|260092782|gb|EEW76717.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae RdAW]
          Length = 454

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454


>gi|146305569|ref|YP_001186034.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina
           ymp]
 gi|166221595|sp|A4XPN6|HSLU_PSEMY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145573770|gb|ABP83302.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           mendocina ymp]
          Length = 446

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/448 (51%), Positives = 317/448 (70%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             +  SNTR++FRK+LR+G++ DKEIDIEVA++ 
Sbjct: 121 RAEDAAEERILDALLPPARQAFGDEPVRSEDSNTRQLFRKRLREGQLDDKEIDIEVAESP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  LF+ + G G+KK  ++ V      +  +E+ RL++ + +
Sbjct: 181 MGVEIMTPPGMEEM-TSQLQNLFAGL-GKGKKKSRKLKVADALKLVRDEEAARLVNEEEL 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 239 KARALEAVEQHGIVFIDEIDKVAKRGNTGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY  L+
Sbjct: 299 DHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++F E+ I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 359 KTEGLNIEFAEEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + IDA YV  H+G+   + D+  +IL
Sbjct: 419 EPIRIDAAYVNGHLGELAQDEDLSRYIL 446


>gi|319775580|ref|YP_004138068.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3047]
 gi|301169214|emb|CBW28811.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae 10810]
 gi|317450171|emb|CBY86385.1| molecular chaperone and ATPase component of HslUV protease
           [Haemophilus influenzae F3047]
          Length = 444

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 308/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|163803564|ref|ZP_02197432.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
 gi|159172651|gb|EDP57507.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
          Length = 443

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+               TSNTR+ FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQTFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ ++++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKMVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 ESAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L  +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N T  +IGARRL TVMER++++IS+ A++   +  VI
Sbjct: 361 TEEVDVEFTEDGITKIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKGGEKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV+  +GD   + D+  FIL
Sbjct: 421 DAAYVKDRLGDTIEDEDLSRFIL 443


>gi|30250193|ref|NP_842263.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea
           ATCC 19718]
 gi|62286874|sp|Q82SP6|HSLU_NITEU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|30180988|emb|CAD86173.1| hslU; heat shock protein chaperone [Nitrosomonas europaea ATCC
           19718]
          Length = 443

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/442 (53%), Positives = 316/442 (71%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPQEIVHELDKHIIGQDTAKRAVAIALRNRWRRQQVDEPLRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI   RE    + +  A
Sbjct: 64  TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREREIRKNQPLA 123

Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+               ++ TR+ FRKKLR+GE+ DKEI+IEVA   + 
Sbjct: 124 EDRAEERILDALLPPARDLGFEASPSEESNATRQKFRKKLREGELDDKEIEIEVAMAQTS 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +  F  PG   +    +  +F   MGSG++K  ++ +++    L  +E+ RL++ + +  
Sbjct: 184 MEIFAPPGMEEL-TSQIQGMFQN-MGSGKRKMRKLRIREARKLLTEEEAARLVNDEELKL 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++Q VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG+++STKYG I TDH
Sbjct: 242 GAVQNVEQNGIVFLDEIDKITSRSEVSGSDVSRQGVQRDLLPLVEGTTISTKYGMIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT+T++ LI QY+ L+KT
Sbjct: 302 ILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSAEDFKQILTNTDACLIRQYQALLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EGI L+F+ED+I  LA++A ++N    +IGARRL TVME++LEDISF+A+     T VID
Sbjct: 362 EGIELNFSEDAIGRLAEIAFSVNERTENIGARRLHTVMEKLLEDISFNATRYGGSTHVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G      D+  ++L
Sbjct: 422 AVYVDERLGKLSQSEDLARYVL 443


>gi|188997486|ref|YP_001931737.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|229486306|sp|B2V6B0|HSLU_SULSY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188932553|gb|ACD67183.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 448

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/449 (51%), Positives = 325/449 (72%), Gaps = 13/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV EL++YI+GQ +AK+AVA+ALRNRWRRQ+LP DLRDE++PKNIL++G
Sbjct: 1   MEIDKELTPKQIVEELNKYIVGQYEAKKAVAVALRNRWRRQKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+LVDV+  +V+  + +
Sbjct: 61  PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMVKAEKME 120

Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE+ILD LV K              S  RE FR+ L++G++ DK ++I+V
Sbjct: 121 EVREKAKAIAEEKILDYLVPKKPKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            +  S +    +  G       L ELFS  +G  ++KK R++V++    +  +E+++LID
Sbjct: 181 EEKVSAVVGGVVVPGLEDIESQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLID 239

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           MD V   +++  EN GIVF+DE DK+ AR  S +G  VSREGVQRDLLP+VEG+ VSTKY
Sbjct: 240 MDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTKY 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF  ILT+ ++ LI Q
Sbjct: 300 GPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIKQ 359

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  LM TEG+ L+FTED+I  +A +A  +N    +IGARRL T++ER++ED SF+A DL+
Sbjct: 360 YIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILERIMEDYSFNAPDLK 419

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + +VID++ VR  +G+  +  D+  +IL
Sbjct: 420 GQKIVIDSKLVREKLGNVITNEDLTRYIL 448


>gi|330877949|gb|EGH12098.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 445

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/448 (51%), Positives = 315/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTE + ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEDLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDA+YV  H+G+     D+  +IL
Sbjct: 418 APIEIDADYVNSHLGELAENEDLSRYIL 445


>gi|269964741|ref|ZP_06178979.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio
           alginolyticus 40B]
 gi|269830640|gb|EEZ84861.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio
           alginolyticus 40B]
          Length = 443

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/443 (50%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   D+V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMDKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EAAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VI
Sbjct: 361 TEDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D+ YV+  +GD   + D+  FIL
Sbjct: 421 DSAYVKARLGDTIEDEDLSRFIL 443


>gi|91226628|ref|ZP_01261352.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|91189102|gb|EAS75384.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
          Length = 443

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+               +S+TR++FRKKLR+G++ DKEI+I+VA    
Sbjct: 123 AEEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +    KKK ++ ++     L  +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQN-LAGDTKKKRKLKIKDAMKALAEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G + TD
Sbjct: 241 EAAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  LMK
Sbjct: 301 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + ++FTED I  +A+ A  +N +  +IGARRL TVMER++++IS+ A++      VI
Sbjct: 361 TEDVEIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D+ YV+  +GD   + D+  FIL
Sbjct: 421 DSAYVKARLGDTIEDEDLSRFIL 443


>gi|255020689|ref|ZP_05292751.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969925|gb|EET27425.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Acidithiobacillus caldus ATCC 51756]
          Length = 443

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/445 (49%), Positives = 310/445 (69%), Gaps = 10/445 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M +    +PREIV ELD+YI+GQ +AKRAVA+ALRNRWRR Q+  DLR E+ PKNIL++G
Sbjct: 1   MSMR-EMTPREIVQELDKYIVGQDEAKRAVAVALRNRWRRAQVSGDLRAEITPKNILMIG 59

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL ++A+N+VR  R+ 
Sbjct: 60  PTGVGKTEIARRLAQLAKAPFIKVEATKFTEVGYVGKDVESIIRDLAEIAVNLVRNERQQ 119

Query: 121 EVREQASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
            V  +A   AEERILDAL+             NTR+ FRK LR+G++ DKEIDIE+  + 
Sbjct: 120 AVGLRAEELAEERILDALLPGPRDASLPRQDENTRQKFRKMLREGKLDDKEIDIEIRASK 179

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                F  P G       L +LF++ M     ++ ++SV +    L  +E+ +L++ D V
Sbjct: 180 GPGVEFMAPPGMEEMGAQLRDLFAR-MAPHNTQRRKVSVAEARTLLRDEEAAKLVNEDEV 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
              +++ ++  GIVF+DE DK+ +R++  +G  +SREGVQRDLLPLVEGS+VST+YG + 
Sbjct: 239 RSTALERLQADGIVFIDEIDKVTSRNNAQSGPDISREGVQRDLLPLVEGSNVSTRYGVVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D   IL + E+ L+ QY  L
Sbjct: 299 TDHILFIASGAFHLSKPSDLIPELQGRLPIRVELQALSAADLERILREPENALVRQYTAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  + + L FT+D I  +A++A  +N  V +IGARRL TVMER+LED++F A D     +
Sbjct: 359 LAADEVELRFTDDGIRRIAEIAQQVNEGVENIGARRLHTVMERLLEDLAFRAPDAGIGEI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID +YV   +GD  ++ D+  +IL
Sbjct: 419 TIDTDYVNARLGDLAADEDLSRYIL 443


>gi|146280739|ref|YP_001170892.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           stutzeri A1501]
 gi|166221597|sp|A4VGE9|HSLU_PSEU5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145568944|gb|ABP78050.1| heat shock protein HslU [Pseudomonas stutzeri A1501]
 gi|327479007|gb|AEA82317.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/449 (52%), Positives = 325/449 (72%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    ++R 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVHKMRH 120

Query: 125 QASINAEERILDALVG------------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+             ++  SNTR++FRK+LR+G++ DKEIDIEVA++
Sbjct: 121 RAEDAAEERILDALLPPARPVGFSEEPVQSGDSNTRQLFRKRLREGQLDDKEIDIEVAES 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LF+  MG G+KK  ++ +++ +  +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFAN-MGKGKKKSRKLKIKEAFKLIRDEEAARLVNEED 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE  GIVF+DE DK+  R + +G  VSREGVQRDLLPL+EGS+V+TK G + 
Sbjct: 239 LKARALEAVEQNGIVFIDEIDKVAKRGNTSGADVSREGVQRDLLPLIEGSTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  + L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHAALTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT- 411
           +KTEG+ ++F ED I  +A++A  +N    +IGARRL T++ER+LE++SFSA+DL  K  
Sbjct: 359 LKTEGLHIEFLEDGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLAGKQQ 418

Query: 412 ---VVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA YV  H+G+   + D+  +IL
Sbjct: 419 GEPIRIDAAYVNEHLGELAQDEDLSRYIL 447


>gi|241765140|ref|ZP_04763128.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax
           delafieldii 2AN]
 gi|241365219|gb|EER60066.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax
           delafieldii 2AN]
          Length = 441

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/441 (51%), Positives = 307/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDHHIVGQSGAKRAVAIALRNRWRRQQVEGSLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES   ++R +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEMAVKQTRESEMKKMRSR 122

Query: 126 ASINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILD L+            + S  R+VFRKKLR+G + DKEI+I+VA++   +
Sbjct: 123 AEDAAEERILDVLIPPARAAAGVEHASDSTARQVFRKKLREGSLDDKEIEIDVAESRPQV 182

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS+ MG  +++  ++ + +    L  +E+ +L++ + +   
Sbjct: 183 ELM-GPAGMEEMTEQLRGMFSQ-MGQDKRRTRKLKIAEALKLLTDEEAGKLVNEEEIKTR 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +IQ  E  GIVF+DE DK+ AR   +G  VSR+GVQRDLLPLVEG++VSTKYG + TDHI
Sbjct: 241 AIQNAEQSGIVFIDEIDKVAARQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T ++L+ QY+ L+ TE
Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILMQTHASLVKQYQALLATE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ LDFT D I  LA +A  +N    +IGARRL TVMER+L+D+SF A+ L  +TV +DA
Sbjct: 361 GVTLDFTPDGITRLARIAFEVNERTENIGARRLATVMERLLDDVSFDAARLSGQTVTVDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  +IL
Sbjct: 421 AYVDARLQTLSQDEDLSRYIL 441


>gi|239908473|ref|YP_002955215.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio
           magneticus RS-1]
 gi|239798340|dbj|BAH77329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio
           magneticus RS-1]
          Length = 457

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/459 (49%), Positives = 314/459 (68%), Gaps = 26/459 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+   LRDE+ PKNI+++GPT
Sbjct: 1   MHASLTPREIVSELDKYIIGQRDAKRMVAIAMRNRWRRQQIEPVLRDEIAPKNIIMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLARLAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   + V
Sbjct: 61  GVGKTEIARRLARLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRQEELERV 120

Query: 123 REQASINAEERILDALVGKTATS-----------------------NTREVFRKKLRDGE 159
           R +A   AEER+LD L+ ++                           TR+  RK  R+G+
Sbjct: 121 RVKAEKAAEERLLDLLLPESQRPAHGPIPMPAAIEAPAEPAGEQGLTTRDKLRKLWREGK 180

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+ + +EV+  S  +    +PG   +G     +LFSK     RKK   M V++ Y  +
Sbjct: 181 LDDRMVPVEVSMPSPQVEIMSMPGMEEMG-SQFKDLFSKAFPQ-RKKTKTMRVREAYEVI 238

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPL 278
           +++ESDRL+DMD V   + + VE  GI+F+DE DKI  R   G G  VSREGVQRDLLP+
Sbjct: 239 LQEESDRLVDMDKVSETARERVEQTGIIFIDEIDKICGRQGGGQGPDVSREGVQRDLLPV 298

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEG  V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF  IL
Sbjct: 299 VEGCVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFHRIL 358

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ L +QYK L+ TE + L+FT++++  +A  A  +N+   +IGARRL T+ME++L 
Sbjct: 359 TEPQNALTVQYKALLATENVTLEFTDEALREVAQFAQRINADTENIGARRLYTIMEKILS 418

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF+ASD   +TVV+D  YVR  + D   + D+  +IL
Sbjct: 419 DLSFAASDQGGQTVVVDPAYVREKLADVAEDRDLSRYIL 457


>gi|222112159|ref|YP_002554423.1| ATP-dependent protease ATP-binding subunit hslu [Acidovorax ebreus
           TPSY]
 gi|254802304|sp|B9MFS2|HSLU_ACIET RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221731603|gb|ACM34423.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax ebreus
           TPSY]
          Length = 446

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/446 (50%), Positives = 310/446 (69%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122

Query: 126 ASINAEERILDALVGKT--------------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AE+RILD L+                   S  R+VFRKKLR+G++ DKEI+I++AD
Sbjct: 123 AEDAAEDRILDVLIPPARGASVDTARTGDPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  +FS+ MG  R++  ++ + +    L+ +E+ +L++ +
Sbjct: 183 ARPQFEIMS-PAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVNEE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   ++   E  GIVF+DE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG +
Sbjct: 241 EVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ 
Sbjct: 301 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQYQA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TEG+ LDFT + I  LA +A  +N    +IGARRL TVMER+L+++S+ A+ L  +T
Sbjct: 361 LLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSGQT 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VV+DA YV   +     + D+  +IL
Sbjct: 421 VVVDAGYVNARLQSLSQDEDLSRYIL 446


>gi|87122852|ref|ZP_01078722.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121]
 gi|86161863|gb|EAQ63158.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121]
          Length = 439

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/439 (51%), Positives = 311/439 (70%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP  +R E+ PKNIL++GPTGVG
Sbjct: 3   KMTPRETVNALDEHIIGQQSAKRAVAIALRNRWRRMQLPEAMRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE   + ++ +
Sbjct: 63  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQASERLQNK 122

Query: 126 ASINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A+  AE+RILDAL+        T  S+TR+VFRKKLR+G++ DKEIDI++A  ++++   
Sbjct: 123 AADAAEDRILDALLPPARGVEPTEDSSTRQVFRKKLREGQLDDKEIDIDLAAQAANVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  +FS   G  +  K ++ V+    ++  +E+ +LI+ D +   +++
Sbjct: 183 TPPGMEEM-TSQLQNMFSN-FGGEKTTKRKLKVKDALRQVRDEEAAKLINEDELKAQAVE 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            VE  GIVFLDE DK+      +   VSREGVQRDLLPLVEG +VSTKYG I TDHILFI
Sbjct: 241 AVEQNGIVFLDEIDKVAKSSERSSGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+S+P+DL+PE+QGR P+RV L +L   DF+ IL +  ++L  QY  L  TEG+ 
Sbjct: 301 ASGAFHLSKPSDLIPELQGRLPIRVELNALTVEDFKRILVEPNASLTKQYVALAATEGVT 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEY 418
           L+FTE+ I  LA+VA  +N T  +IGARRL T++ER+LE++S+SASD+   + V I AEY
Sbjct: 361 LNFTEEGIHRLAEVAFKVNETTENIGARRLHTMLERLLEEVSYSASDMPDGQEVNITAEY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +G+   + D+  +IL
Sbjct: 421 VDDQLGEVVEDEDLSRYIL 439


>gi|145640470|ref|ZP_01796054.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|145275056|gb|EDK14918.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.4-21]
          Length = 444

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 307/443 (69%), Gaps = 12/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + 
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TD
Sbjct: 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM 
Sbjct: 302 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV I
Sbjct: 362 TEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 422 DAAYVADALGEVVENEDLSRFIL 444


>gi|121595971|ref|YP_987867.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax sp.
           JS42]
 gi|166221455|sp|A1WC16|HSLU_ACISJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120608051|gb|ABM43791.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax sp. JS42]
          Length = 446

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/446 (50%), Positives = 310/446 (69%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122

Query: 126 ASINAEERILDALVGKT--------------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AE+RILD L+                   S  R+VFRKKLR+G++ DKEI+I++AD
Sbjct: 123 AEDAAEDRILDVLIPPARGAGVDTARTGEPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  +FS+ MG  R++  ++ + +    L+ +E+ +L++ +
Sbjct: 183 ARPQFEIMS-PAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVNEE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   ++   E  GIVF+DE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG +
Sbjct: 241 EVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ 
Sbjct: 301 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQYQA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TEG+ LDFT + I  LA +A  +N    +IGARRL TVMER+L+++S+ A+ L  +T
Sbjct: 361 LLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSGQT 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VV+DA YV   +     + D+  +IL
Sbjct: 421 VVVDAGYVNARLQSLSQDEDLSRYIL 446


>gi|322382308|ref|ZP_08056215.1| ATP-dependent protease ATP-binding subunit HslU-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153661|gb|EFX46036.1| ATP-dependent protease ATP-binding subunit HslU-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 503

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/460 (43%), Positives = 310/460 (67%), Gaps = 30/460 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELDRYI+GQ++AK++VA+ALRNR+RR  L   ++DE++PKNIL++GPTGVGK
Sbjct: 45  LTPREIVKELDRYIVGQKEAKKSVAVALRNRYRRSLLDESMKDEIVPKNILMIGPTGVGK 104

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I +V+  + ++++++A
Sbjct: 105 TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMVKAEKTEKLKDRA 164

Query: 127 SINAEERILDALVGKTATS-----------------------------NTREVFRKKLRD 157
              A +R++  LV    +S                               R   ++KL  
Sbjct: 165 EQLANDRLVSILVPSPKSSKGQRNPLEMFFSSQQHQEEDEEKKDSGLAERRLEMKEKLLR 224

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ D  +++EV D +  + +     G     +N+ E+F  +M   R K+ +++V++   
Sbjct: 225 GELEDTMVEVEVEDNAPSMLDMLAGQGNEQMGMNMQEMFGNLM-PKRTKRRKLTVKEARK 283

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E+ +L+DMD V ++SI+  E  GI+F+DE DKI +   GNG  VSREGVQRD+LP
Sbjct: 284 ILTHEEAQKLMDMDEVVQESIERAEQSGIIFIDEIDKIASTGRGNGPDVSREGVQRDILP 343

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS++ TKYG + TD+ILF+A+GAFH+++P+DL+PE+QGRFP+RV L +L   DF LI
Sbjct: 344 IVEGSTIMTKYGPVKTDYILFVAAGAFHIAKPSDLIPELQGRFPIRVELNNLTLDDFVLI 403

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ L  QY  L++TEGI ++F++ +I+ +A +AV +N +  +IGARRL T++E++L
Sbjct: 404 LKEPKNALTKQYVALLETEGITVEFSQKAIEEIARIAVEVNQSTENIGARRLHTILEKLL 463

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A +L  +T++I  EYVR  + +     D+  +IL
Sbjct: 464 EDLSFEAPELTLETMLITPEYVREKLSNIVENRDLSQYIL 503


>gi|329122377|ref|ZP_08250964.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116]
 gi|327473659|gb|EGF19078.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116]
          Length = 454

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454


>gi|253573514|ref|ZP_04850857.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847042|gb|EES75047.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 467

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 204/464 (43%), Positives = 309/464 (66%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IV+ELD+YI+GQ+ AK++VA+ALRNR+RR  LP +++DE++PKNIL++GPTGVG
Sbjct: 5   NLTPRQIVAELDKYIVGQKQAKKSVAVALRNRYRRSLLPEEVQDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDL++ AI  V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLIETAIRTVKLERTEKVKDK 124

Query: 126 ASINAEERILDALVGKTAT--------------------------------SNTREVFRK 153
           A   A ER++  LV                                     +  R   R 
Sbjct: 125 AEGLANERLVQILVPSENKTKGVRNPFEMLFGGGNGANTSAQEEPEEDSTLAERRRQVRF 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G++ +  +++EV D +  + +     G     +N+ E+F  ++   R KK +++V+
Sbjct: 185 KLLSGQMENDIVEVEVEDNTPTMMDMFAGQGNDQLGMNMQEMFGNLL-PKRTKKRKLTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E+ +LID D + +++I   E  GI+F+DE DK+ +R  G+G  VSREGVQR
Sbjct: 244 EARKVLTQEEAAKLIDQDDLIQEAITRAEQSGIIFIDEIDKVASRGQGSGPDVSREGVQR 303

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG I TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL   D
Sbjct: 304 DILPIVEGSTVMTKYGPIKTDYILFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTLED 363

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ E+ L  QY EL++TE + ++F++ +I  +A +A  +N+   +IGARRL T++
Sbjct: 364 FVSILTEPENALTKQYIELLRTEDLEIEFSDAAIHEIARIAAMVNANTENIGARRLHTIL 423

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A +L    +VI  EYVR  +G+   + D+  FIL
Sbjct: 424 EKLLEDLSFEAPELTLDKMVITPEYVREKLGNIAQDRDLSQFIL 467


>gi|330886166|gb|EGH20067.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 445

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/448 (51%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELTRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|71735439|ref|YP_272684.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|123734048|sp|Q48PI5|HSLU_PSE14 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|71555992|gb|AAZ35203.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 445

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/448 (51%), Positives = 314/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLHEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI+IE+    
Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--- 410
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDA 417

Query: 411 -TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDAEYV  H+GD     D+  +IL
Sbjct: 418 APIEIDAEYVNSHLGDLAENEDLSRYIL 445


>gi|237756271|ref|ZP_04584829.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691572|gb|EEP60622.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 448

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 231/449 (51%), Positives = 325/449 (72%), Gaps = 13/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++    +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP DLRDE++PKNIL++G
Sbjct: 1   MEIDRELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQKLPEDLRDEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+LVDV+  +++  + +
Sbjct: 61  PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMIKAEKME 120

Query: 121 EVREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEV 169
           EVRE+A   AEE++LD LV K              S  RE FR+ L++G++ DK ++I+V
Sbjct: 121 EVREKAKAIAEEKVLDYLVPKKTKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            +  S +    +  G       L ELFS  +G  ++KK R++V++    +  +E+++LID
Sbjct: 181 EEKVSAVVGGVVVPGLEDIESQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLID 239

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           MD V   +++  EN GIVF+DE DK+ AR  S +G  VSREGVQRDLLP+VEG+ VSTKY
Sbjct: 240 MDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTKY 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF  ILT+ ++ LI Q
Sbjct: 300 GPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIKQ 359

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  LM TEG+ L+FTED+I  +A +A  +N    +IGARRL T++E+++ED SF+A DL+
Sbjct: 360 YIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILEKIMEDFSFNAPDLK 419

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + +VID++ VR  +G+  +  D+  +IL
Sbjct: 420 GQKIVIDSKLVREKLGNVITNEDLTRYIL 448


>gi|104783982|ref|YP_610480.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           entomophila L48]
 gi|122401537|sp|Q1I3T9|HSLU_PSEE4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|95112969|emb|CAK17697.1| ATPase component of the HslUV protease [Pseudomonas entomophila
           L48]
          Length = 447

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/450 (51%), Positives = 317/450 (70%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIVRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             +  SNTR++FRK+LR+G++ DKEI+IEVA+
Sbjct: 121 RAEDAAEDRILDALLPQARVSSFSEEAQQSSGDSNTRQLFRKRLREGQLDDKEIEIEVAE 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     +   P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 SMG--VDIAAPPGMEEMTNQLQSLFAN-MGKGKRKSRKLKVKEALKMVRDEEAGRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+E
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILKEPHASLTEQYRE 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ ++F ++ +  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLHIEFADEGLKRLAEIAFQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DETPIHIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|15600247|ref|NP_253741.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PAO1]
 gi|107104154|ref|ZP_01368072.1| hypothetical protein PaerPA_01005227 [Pseudomonas aeruginosa PACS2]
 gi|116053202|ref|YP_793523.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218894153|ref|YP_002443022.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa LESB58]
 gi|254238239|ref|ZP_04931562.1| heat shock protein HslU [Pseudomonas aeruginosa C3719]
 gi|254244064|ref|ZP_04937386.1| heat shock protein HslU [Pseudomonas aeruginosa 2192]
 gi|296391901|ref|ZP_06881376.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PAb1]
 gi|313110092|ref|ZP_07795994.1| heat shock protein HslU [Pseudomonas aeruginosa 39016]
 gi|21759207|sp|Q9HUC5|HSLU_PSEAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122256783|sp|Q02EW3|HSLU_PSEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226704530|sp|B7V3E7|HSLU_PSEA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|9951345|gb|AAG08439.1|AE004918_9 heat shock protein HslU [Pseudomonas aeruginosa PAO1]
 gi|115588423|gb|ABJ14438.1| heat shock protein HslU [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170170|gb|EAZ55681.1| heat shock protein HslU [Pseudomonas aeruginosa C3719]
 gi|126197442|gb|EAZ61505.1| heat shock protein HslU [Pseudomonas aeruginosa 2192]
 gi|218774381|emb|CAW30198.1| heat shock protein HslU [Pseudomonas aeruginosa LESB58]
 gi|310882496|gb|EFQ41090.1| heat shock protein HslU [Pseudomonas aeruginosa 39016]
          Length = 447

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/449 (53%), Positives = 322/449 (71%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V+ 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120

Query: 125 QASINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+                 SNTR++FRK+LR+G++ DKEIDIEVAD 
Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LFS  M  G+KK  ++ V +    +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVAEALKLIRDEEAVRLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DKI  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA+DL     
Sbjct: 359 LKTEGLAIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +K ++IDA YV  H+G+   + D+  +IL
Sbjct: 419 DKPILIDAGYVNSHLGELAEDEDLSRYIL 447


>gi|209545199|ref|YP_002277428.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532876|gb|ACI52813.1| heat shock protein HslVU, ATPase subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 438

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/435 (53%), Positives = 327/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL   LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE R++DALVG+ A+++T+  FR+ LR+GE+ +KE++I +ADT +     D+    
Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGGMGDMGNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S  ++N S++   +M     ++ RM+V      L R+E+D+++D D +  +++   +++G
Sbjct: 185 SGTVINFSDMMKGLMNRV-PQRRRMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L  L + D R ILT+ E +L+ QY  L+ TEG+ L+F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++D++DALA++A ++N  + +IGARRL TV+ER+LE++SF+ASD   + V I A  V+  
Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|323144075|ref|ZP_08078718.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416151|gb|EFY06842.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei
           YIT 12066]
          Length = 442

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/442 (50%), Positives = 301/442 (68%), Gaps = 10/442 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIVSELDR+IIGQ++AK++VAIALRNRWRR Q+   LR E+ PKNIL++GPTGV
Sbjct: 2   TELTPREIVSELDRFIIGQKEAKKSVAIALRNRWRRMQIDPKLRGEIFPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA LA APFIKVE TK+TE+GYVG+ V+ IIRDLVDV + +V+E    + R 
Sbjct: 62  GKTEIARRLASLANAPFIKVEATKYTEVGYVGKEVDSIIRDLVDVGMKLVKEQAFKKNRV 121

Query: 125 QASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +A   AEERILDAL+             + TR++FRKKLR+ E+ D+EI+I VADT    
Sbjct: 122 RAEDAAEERILDALLPPADNTPESEKENNPTRQIFRKKLREHELDDREIEIRVADTGPSF 181

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           +              L  LF   M + R    +M ++  + EL+ +E+++L   D +  +
Sbjct: 182 NIIGGNAAIEEVNNQLQSLFDN-MNANRTVVRKMKIKDAFKELVMEEAEKLTKKDDLKTE 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I + EN GIVF+DE DKI  +D     G VSR+GVQRDLLPL+EG  VSTKYG + TDH
Sbjct: 241 AINLTENNGIVFIDEIDKICGQDLNGSRGEVSRQGVQRDLLPLIEGCQVSTKYGMVRTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ L+ T
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELKALTSEDFERILKEPHTSLTKQYEMLLAT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++FT+D+I  +A+ A  +N    +IGARRL T+ME++LE +SF A D   + VVID
Sbjct: 361 EGVTIEFTDDAIKRIAEDAFTVNERTENIGARRLHTLMEKLLESVSFEAPDHAGQKVVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV  H+G+     D+  +IL
Sbjct: 421 AEYVDDHLGELVQNEDLSRYIL 442


>gi|83648621|ref|YP_437056.1| ATP-dependent protease ATP-binding subunit HslU [Hahella chejuensis
           KCTC 2396]
 gi|123753515|sp|Q2S9P3|HSLU_HAHCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83636664|gb|ABC32631.1| heat shock protein HslVU, ATPase subunit HslU [Hahella chejuensis
           KCTC 2396]
          Length = 442

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AKRAVAIALRNRWRR Q+   LR+E+ PKNIL++GPTGVG
Sbjct: 3   SMTPREIVQELDKHIIGQDSAKRAVAIALRNRWRRMQIDEGLREEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+AI ++RE    +V  +
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLADMAIKLLREKEMTKVENR 122

Query: 126 ASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               S  R+VFRKKLR+G + DKEIDIE+  T   
Sbjct: 123 ALDAAEERILDALLPPARSFNSDAPVEKESAARQVFRKKLREGTLDDKEIDIEIKATPVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +FS  M   RK+  RM V +   ++  +E+ +L++ + + +
Sbjct: 183 VEIMAPPGMEEM-TSQLQSMFSN-MSGDRKRTKRMKVAEAMKKVKDEEAAKLVNEEEIKQ 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +++ VE  GIVF+DE DK+  R   +   VSREGVQRDLLPL+EG +VSTK+G + TDH
Sbjct: 241 RALRAVEENGIVFIDEIDKVAKRSETSSADVSREGVQRDLLPLIEGCTVSTKFGMLKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGR P+RV L +L+ SDF+ ILT+  ++L  QY  LMKT
Sbjct: 301 ILFIASGAFHLAKPSDLIPELQGRLPIRVELDALSPSDFQRILTEPNASLTEQYVALMKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F+E +I  +A++A  +N    +IGARRL TVME++LE++SF+A D    +  + 
Sbjct: 361 EGVDISFSEGAIQRIAEIAWKVNEKTENIGARRLHTVMEKLLEEVSFAAGDKIRDSFEVT 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           AEYV   +G+   + D+  +IL
Sbjct: 421 AEYVDKCLGELSEDEDLSRYIL 442


>gi|114330626|ref|YP_746848.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha
           C91]
 gi|122312892|sp|Q0AD37|HSLU_NITEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114307640|gb|ABI58883.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosomonas
           eutropha C91]
          Length = 443

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/442 (52%), Positives = 315/442 (71%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQ+ AKR+VAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPQEIVHELDKHIIGQEAAKRSVAIALRNRWRRQQVGEPLRHEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI   RE    + +  A
Sbjct: 64  TEIARRLARLADAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREHEIRKNKPLA 123

Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AEERILDAL+     S            TR+ FRKKLR+GE+ DKEIDIE+  + + 
Sbjct: 124 EDRAEERILDALLPSARDSGFDANPSEENNATRQKFRKKLREGELDDKEIDIEITMSQAS 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +  F  PG   +    +  +F   MG+ +KK  ++ +++    L  +E+ RLI+ + +  
Sbjct: 184 MEIFAPPGMEEL-TSQIQGMFQN-MGASKKKSRKLRIREARKLLTEEEAARLINDEELKL 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +++Q VE  GIVFLDE DKI +R   +   +SR+GVQRDLLPLVEG+++STKYG I TDH
Sbjct: 242 NAVQNVEQNGIVFLDEIDKITSRSEVSSSDISRQGVQRDLLPLVEGTTISTKYGMIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF+ ILT+T++ LI QY+ L+KT
Sbjct: 302 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSADDFKQILTNTDACLIRQYQALLKT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EGI L+F+ED+I+ LA++A ++N    +IGARRL TVME++LEDISF+A+     T VID
Sbjct: 362 EGIELNFSEDAIERLAEIAFSVNEITENIGARRLHTVMEKLLEDISFNATRYSGSTHVID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G      D+  ++L
Sbjct: 422 AAYVDERLGKLSQSEDLARYVL 443


>gi|162149054|ref|YP_001603515.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787631|emb|CAP57227.1| putative ATP-dependent hsl protease ATP-binding subunit hslU
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/435 (53%), Positives = 328/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL   LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE R++DALVG+ A+++T+  FR+ LR+GE+ +KE++I +ADT +  S  D+    
Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGSMGDMGNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S  ++N S++   +M     ++ RM+V      L R+E+D+++D D +  +++   +++G
Sbjct: 185 SGTVINFSDMMKGLMNRV-PQRRRMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L  L + D R ILT+ E +L+ QY  L+ TEG+ L+F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++D++DALA++A ++N  + +IGARRL TV+ER+LE++SF+ASD   + V I A  V+  
Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|15605757|ref|NP_213134.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5]
 gi|11132844|sp|O66574|HSLU_AQUAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|2982904|gb|AAC06522.1| chaperone HslU [Aquifex aeolicus VF5]
          Length = 450

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/445 (48%), Positives = 324/445 (72%), Gaps = 11/445 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L    +P+ +V EL++Y++GQ++AK+AVAIALRNRWRRQ+LP +LR+E++PKNIL++GP
Sbjct: 8   ELLEELTPKRVVEELNKYVVGQEEAKKAVAIALRNRWRRQKLPENLRNEVIPKNILMIGP 67

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA L  APF+KVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +  E
Sbjct: 68  TGVGKTEIARRLANLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSFQMVKQEKMKE 127

Query: 122 VREQASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADT 172
           VRE+A   AEER+LD LV    TS           RE  R+KLR GE+ D+ ++IEV + 
Sbjct: 128 VRERARRLAEERLLDYLVPHQFTSFGIRESRDAGKREELRQKLRKGELDDRIVEIEVKEK 187

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     P G       + E+ S ++ S R  + ++ V++    L ++E+++LIDM+ 
Sbjct: 188 TVPMVGIAGPPGLEELENQIKEMLSGLIPSKR--RRKVKVKEALQILEQEEAEKLIDMEE 245

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V R++I   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP++EG++V+TKYG + 
Sbjct: 246 VAREAIYRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPILEGTTVNTKYGPVK 305

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF+ IL + E+ L  QY EL
Sbjct: 306 TDHILFIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPENALTKQYIEL 365

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L+FT+D+I+ +A +A  +N+   +IGARRL TVME++LEDISF+A ++  +T+
Sbjct: 366 LKTENVYLEFTDDAIEEIARIAEEINTKTENIGARRLHTVMEKLLEDISFNAPEMAGQTI 425

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +IDA++V+  + +   + ++  +IL
Sbjct: 426 IIDAKFVKAKLENLVKDEELSRYIL 450


>gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium
           sp. Marseille]
 gi|151281322|gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU
           [Janthinobacterium sp. Marseille]
          Length = 449

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/451 (49%), Positives = 309/451 (68%), Gaps = 20/451 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIVSELD++++GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RE    +VR 
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRA 120

Query: 125 QASINAEERILDALVGKTAT------------------SNTREVFRKKLRDGEISDKEID 166
           +A   AE+RI+D LV                       + TR+ FRK+LR+G + D EI+
Sbjct: 121 RAEDAAEDRIIDILVPPARDFGFHPSSSTGSDTAPSTGNATRQTFRKRLREGTLDDTEIE 180

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           IE+A+    +     PG   +    +  +FS V G  RKK  ++ +++    L+ +E+ +
Sbjct: 181 IELAEAGPSMEIMAPPGMEEM-TEQIKSMFSGV-GGTRKKTRKVKIKEAMKLLIEEEAGK 238

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ D + + +I  VE  GIVFLDE DKI  R    G  VSR GVQRDLLPLVEG++V+T
Sbjct: 239 LVNEDELKQKAITNVEQNGIVFLDEIDKIATRSENGGADVSRAGVQRDLLPLVEGTTVNT 298

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L 
Sbjct: 299 KYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLT 358

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ ++F  D I  +A++A ++N    +IGARRL TVME++LE+ISFSA+D
Sbjct: 359 RQYEALLGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSATD 418

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++T+VID  YV   +G      D+  ++L
Sbjct: 419 DPDQTLVIDGVYVDERLGALSVNEDLSRYVL 449


>gi|315633393|ref|ZP_07888684.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393]
 gi|315477893|gb|EFU68634.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393]
          Length = 443

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   +R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIVKNRAK 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+            + + SNTR++FRKKLR+G++ DKE++I+VA  S 
Sbjct: 123 AEEAAEERILDALLPAAKNQWGEVENRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVSM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        L  +F   +   + KK +M ++     L+ DE+ +L++ + + 
Sbjct: 183 GVEIMAPPGM-EDMTSQLQSMFEN-LSGSQTKKRKMKIKDALKTLIDDEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+V+TK+G + TD
Sbjct: 241 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+RP+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I  +A+ A  +N    +IGARRL TVMER+++ ISF+ASD+  +TV I
Sbjct: 361 TEGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+     D+  FIL
Sbjct: 421 DAAYVTEALGEVIENEDLSRFIL 443


>gi|304414794|ref|ZP_07395753.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283146|gb|EFL91559.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 443

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDGHIIGQDKAKRAVAIALRNRWRRMQLPPELRCEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R    +++R QA
Sbjct: 64  TEIARRLAKLASAPFIKVEATKFTEVGYVGKEVDSIIRDLTDTAMKMIRHQSIEKIRAQA 123

Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
             +AE+RILD LVG    S+           TR+ FRKKLR+G++ DKEI+I +A TS  
Sbjct: 124 EKSAEKRILDVLVGPAKESDKSEEKKKSSPTTRQTFRKKLREGKLDDKEIEINLAATSLG 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +    +PG   +    L  +F  +  S + K  ++ +++ +  L+ +E+ +L++ + + +
Sbjct: 184 VEIMSLPGMEEM-TNQLQSMFQHI-ASQKNKTRKLKIKEAFRLLVEEEASKLVNPEELQQ 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R   +G  +SR+GVQRDLLPLVEG +VSTK+G I TD+
Sbjct: 242 QTIEAVEQHGIVFIDEIDKICKRGQTSGPDISRQGVQRDLLPLVEGCTVSTKHGMIKTDY 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V++P+DL+PE+QGRFP+RV L++L   DF  ILT+  ++L  Q+K LM T
Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRFPIRVELEALTTEDFERILTEPNASLTEQHKALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + +DFT + I  +A+ A  +N    +IGARRL TV+ER++ DIS+SA + + +++ ID
Sbjct: 362 EDVTIDFTAEGIKRIAEAAWQVNERTENIGARRLHTVLERLIGDISYSACEQKGRSISID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            EYV   +GD   + D+  FIL
Sbjct: 422 KEYVNEKLGDLVDDEDLSRFIL 443


>gi|330807097|ref|YP_004351559.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375205|gb|AEA66555.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 445

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/448 (52%), Positives = 315/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEITKVRH 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             T  SNTR++FRK+LR+G++ DKEI+IEVA+  
Sbjct: 121 RAEDAAEERILDALLPPARMGFSADAAATQDSNTRQLFRKRLREGQLDDKEIEIEVAE-- 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               +   P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + +
Sbjct: 179 MAGVDISAPPGMEEMTNQLQSLFAN-MGKGKKKNRKLKVKEALKLVRDEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY  L+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILSEPHASLTEQYCALL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++FT + I  LA +A  +N    +IGARRL T++ER+LE++SFSA DL     E
Sbjct: 358 KTEGLNIEFTPEGIKRLAQIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHNE 417

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++IDAEYV  H+G+     D+  +IL
Sbjct: 418 APILIDAEYVNSHLGELAQNEDLSRYIL 445


>gi|254498810|ref|ZP_05111521.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii
           LLAP12]
 gi|254351974|gb|EET10798.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii
           LLAP12]
          Length = 438

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/440 (52%), Positives = 300/440 (68%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVG 65
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++    LR+E+MPKNIL++GPTGVG
Sbjct: 1   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIQDPVLRNEIMPKNILMIGPTGVG 60

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+AI   RE    +V   
Sbjct: 61  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGRDVDSILRDLADIAIKQEREWAMKKVEHL 120

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+             S  R+VFRK+LR+G + + EI+IEV+ T   I 
Sbjct: 121 AEDAAEERILDVLLPPARGSLTSSDKDSTARQVFRKQLREGLLDENEIEIEVSATPVGIE 180

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F +V G+ R K  +M++ K    L  +E+ +LI+ D +   +
Sbjct: 181 IMAPPGMEEM-TSQLQSMFQQV-GTHRTKTRKMTIAKAMKILREEEASKLINEDDIKVRA 238

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I+ VE  GIVF+DE DK+  R  G G  VSREGVQRDLLPLVEG++VSTKYG I +DHIL
Sbjct: 239 IESVEQNGIVFIDELDKVAKRSEGGGGDVSREGVQRDLLPLVEGTTVSTKYGMIKSDHIL 298

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM TEG
Sbjct: 299 FIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMATEG 358

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   + V +D  
Sbjct: 359 LTLSFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGEAVHVDKA 418

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  ++G   ++ D+  +IL
Sbjct: 419 YVEKNLGQLVADEDLARYIL 438


>gi|120609505|ref|YP_969183.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax
           citrulli AAC00-1]
 gi|166221454|sp|A1TKC1|HSLU_ACIAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120587969|gb|ABM31409.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax citrulli
           AAC00-1]
          Length = 438

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 306/438 (69%), Gaps = 8/438 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPALRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122

Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILD L+       + A S  R+VFRKKLR+G++ DKEI+I+VAD    +   
Sbjct: 123 AEDAAEDRILDVLIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDVADARPQLEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L  +FS++    R+K  ++ + +    L  +E+ +L++ + V   ++Q
Sbjct: 183 -GPQGMEEMAEQLRGMFSQMGH-ERRKARKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI
Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ TEG+ 
Sbjct: 301 TSGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F  + I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV +DA YV
Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRVDAAYV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +       D+  +IL
Sbjct: 421 DGRLASLSQNEDLSRYIL 438


>gi|77165804|ref|YP_344329.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|254434376|ref|ZP_05047884.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani
           AFC27]
 gi|76884118|gb|ABA58799.1| Heat shock protein HslU [Nitrosococcus oceani ATCC 19707]
 gi|207090709|gb|EDZ67980.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani
           AFC27]
          Length = 447

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/441 (53%), Positives = 306/441 (69%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV ELD++IIGQ  AKRAVA+ALRNRWRR+Q+  +LR+E+ PKNIL++GPTGVG
Sbjct: 9   ELTPRQIVQELDKHIIGQTAAKRAVAVALRNRWRRRQVSEELRNEITPKNILMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE    +VR Q
Sbjct: 69  KTEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQ 128

Query: 126 ASINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILDAL+              SNTR+ FRK LR+G + D+EI+IE+A  S  +
Sbjct: 129 AEDRAEERILDALLPAARAAPHDTMDEESNTRQKFRKMLREGRLDDREIEIELAAVSMGV 188

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F   +G  R +  R+ V++ +  L  +E+ +LI+ + +   
Sbjct: 189 EIMAPPGMEEM-TSQLQNMFQN-LGGTRTRARRLRVREAFKLLTEEEAGKLINDEDLKAR 246

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           S++ VE  GIVFLDE DKI  R   +G  VSREGVQRDLLPLVEGS+VSTKYG + TDHI
Sbjct: 247 SLENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSAVSTKYGMVRTDHI 306

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGR P+RV L +L+  DF  ILT+  ++L  QY  L+KTE
Sbjct: 307 LFIASGAFHLAKPSDLIPEMQGRLPIRVELGALSVDDFVRILTEPNASLTEQYTALLKTE 366

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L FTE+ I  +A +A  +N    +IGARRL TVMER+LE +SF A +   K V+IDA
Sbjct: 367 GISLHFTEEGIAHIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHTSKKVIIDA 426

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + D   + D+  +IL
Sbjct: 427 AYVDAQLADLARDEDLSRYIL 447


>gi|89098650|ref|ZP_01171532.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086612|gb|EAR65731.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
          Length = 468

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 207/469 (44%), Positives = 305/469 (65%), Gaps = 33/469 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M L+ N +PR+IV  LD+YIIGQ+DAK+AVA+ALRNR+RR  L   +RDE+ PKNIL++G
Sbjct: 1   MSLSTNLTPRQIVERLDQYIIGQKDAKKAVAVALRNRYRRGLLEEAIRDEISPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  
Sbjct: 61  PTGVGKTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMQ 120

Query: 121 EVREQASINAEERILDALVGKTATS-------------------------------NTRE 149
            V+E+A  NA  RI+D LV     +                                 R+
Sbjct: 121 SVKERAEENANRRIVDMLVPSGKKAASYKNPLEMLFGGGGGQQDQENEPAEDYSLTEKRK 180

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           + R+KL  GE+ ++ I +EV +    + +     G     +N+ +  S +M   R KK +
Sbjct: 181 IAREKLAMGELENELITVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSGLMPKKR-KKRK 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSR 268
           ++V++    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI ++ SG     VSR
Sbjct: 240 LTVREARKVLSNEEAQKLIDMDEVTQEAVFRAEQSGIIFIDEIDKIASKSSGGSNADVSR 299

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS+V TKYGS+ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L  
Sbjct: 300 EGVQRDILPIVEGSTVVTKYGSVKTDHVLFMAAGAFHIAKPSDLIPELQGRFPIRVELTK 359

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  IL + ++ L  QY  L++TEGI ++F++D+I  +A+VA  +N    +IGARR
Sbjct: 360 LTVEDFYKILVEPDNALTKQYTALLETEGIQIEFSDDAIRRIAEVAYEVNQNTDNIGARR 419

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+SF A ++    V I  +YV   +G      D+  FIL
Sbjct: 420 LHTILEKLLEDLSFEAPEISMGKVTITPQYVEEKLGAISRNKDLSQFIL 468


>gi|260582238|ref|ZP_05850031.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae NT127]
 gi|260094606|gb|EEW78501.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus
           influenzae NT127]
          Length = 454

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 9   KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    +
Sbjct: 69  TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128

Query: 122 VREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            R +A   AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+
Sbjct: 129 NRVRAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              S       P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ 
Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G 
Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSAVSTKHGM 307

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK
Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +
Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   +G+     D+  FIL
Sbjct: 428 TVNIDAAYVSDALGEVVENEDLSRFIL 454


>gi|242280398|ref|YP_002992527.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           salexigens DSM 2638]
 gi|259491369|sp|C6C0P1|HSLU_DESAD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|242123292|gb|ACS80988.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           salexigens DSM 2638]
          Length = 457

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/457 (48%), Positives = 315/457 (68%), Gaps = 27/457 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD++IIGQ DAKR VAIA+RNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 3   NLTPREIVSELDKFIIGQSDAKRMVAIAMRNRWRRQQLPPELRDEIAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG PF KVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+   ++V+ +
Sbjct: 63  KTEIARRLAKLAGCPFFKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRKEEMEKVKVK 122

Query: 126 ASINAEERILDALVGKTA------------------------TSNTREVFRKKLRDGEIS 161
           A  +AE+ +LD L+  +                          S+TRE FRK  R+G++ 
Sbjct: 123 AEKHAEDALLDILLPSSKPKQPGMGFFNPAAPEEQEEQPSADQSSTREKFRKMWREGKLD 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D+E++IEV+     +    +PG   +G + ++++  K M   +KK  ++ +++ Y  L++
Sbjct: 183 DREVEIEVSVQGGGVEIMSMPGMEDMG-MQVNDMIGK-MFPNKKKMRKVKIREAYDILIQ 240

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVE 280
            ESD+LIDMD V   + + VE  GI+FLDE DKI     G G   VSREGVQRDLLP+VE
Sbjct: 241 QESDKLIDMDNVAELARERVEQGGILFLDEIDKIAGNQEGGGSANVSREGVQRDLLPVVE 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G  V+TKYG + TDHILFI++GAF  ++P+DL+PE+QGRFP+RV L SL+K DF  ILT+
Sbjct: 301 GCVVNTKYGMVKTDHILFISAGAFSYAKPSDLIPELQGRFPLRVELTSLDKDDFYRILTE 360

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L +QYK L++TE + +DF+ ++++ +A  A   N    +IGARRL T+ME++L D+
Sbjct: 361 PQNALTVQYKALLETENLNIDFSREALEEVALNAQKFNEETENIGARRLYTIMEKILSDL 420

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A D    ++VID EYV+  + D   + D+  +IL
Sbjct: 421 SFEAPDRSGDSIVIDKEYVQKQLQDVTEDRDLSRYIL 457


>gi|152984444|ref|YP_001351110.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           aeruginosa PA7]
 gi|166221594|sp|A6VDH5|HSLU_PSEA7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150959602|gb|ABR81627.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           aeruginosa PA7]
          Length = 447

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/449 (53%), Positives = 320/449 (71%), Gaps = 18/449 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V+ 
Sbjct: 61  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120

Query: 125 QASINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+                 SNTR++FRK+LR+G++ DKEIDIEVAD 
Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    L  LFS  M  G+KK  ++ V      +  +E+ RL++ + 
Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVADALKMIRDEEAARLVNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +++ VE +GIVF+DE DKI  R +  G  VSREGVQRDLLPL+EG +V+TK G + 
Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL
Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408
           +KTEG+ ++F ED I  LA++A  +N    +IGARRL T++ER+LE++SFSA+DL     
Sbjct: 359 LKTEGLGIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +K + IDA YV  H+G+   + D+  +IL
Sbjct: 419 DKPIRIDAGYVNSHLGELAEDEDLSRYIL 447


>gi|167036040|ref|YP_001671271.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           GB-1]
 gi|189043915|sp|B0KM26|HSLU_PSEPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166862528|gb|ABZ00936.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           GB-1]
          Length = 447

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 231/450 (51%), Positives = 313/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ + F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIAFQADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|126666728|ref|ZP_01737705.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
 gi|126628773|gb|EAZ99393.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
          Length = 442

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/441 (49%), Positives = 308/441 (69%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQQ+AKRAVAIALRNRWRR QL  +LR+E+ PKNIL++GPTGVGK
Sbjct: 4   LTPREIVLELDKHIVGQQEAKRAVAIALRNRWRRMQLNDELREEISPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDL D+A+ ++RE         A
Sbjct: 64  TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVDSIIRDLADMAVKMLREQEMKRHENSA 123

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDAL+               S TR++FRKKLR+GE+ DKEI+I++ ++S+ +
Sbjct: 124 LDAAEDRILDALLPPARDFNDDNKPREDSATRQMFRKKLREGELDDKEIEIDLRNSSAGV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  M   ++K  +M V      +  +E+ +L++ + + + 
Sbjct: 184 EIMAPPGMEEM-TNQLQSMFAN-MSQDKRKTRKMRVADALRRVKDEEAAKLVNEEEIKQK 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++Q VE  GIVFLDE DK+  R   +   VSREGVQRDLLPL+EGS+V+TKYG+I TDHI
Sbjct: 242 AVQAVEQNGIVFLDEIDKVAKRSENSSSDVSREGVQRDLLPLIEGSTVTTKYGAIRTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGR P+RV L +L  +DF+ ILT+ +++L+ QY+ LM  E
Sbjct: 302 LFIASGAFHLTKPSDLIPELQGRLPIRVELHALTPNDFKRILTEPDASLVQQYEALMGAE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FT+D+I  LA+VA  +N    +IGARRL T++ER+LE +SF A D   +   + A
Sbjct: 362 GLKLSFTDDAITRLAEVAWKVNENTENIGARRLHTMLERLLESLSFDAGDKITEEFEVTA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV   +G    + D+  +IL
Sbjct: 422 EYVEEKLGKLAEDEDLSRYIL 442


>gi|288817501|ref|YP_003431848.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288786900|dbj|BAI68647.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751108|gb|ADO44591.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobacter
           thermophilus TK-6]
          Length = 450

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 215/443 (48%), Positives = 318/443 (71%), Gaps = 10/443 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P+ IV ELD+YI+GQ+ AK+AVAIALRNRWRRQ+LP  +R+E+ PKNIL++GPT
Sbjct: 10  LLEELTPKRIVEELDKYIVGQEQAKKAVAIALRNRWRRQKLPQHIREEVAPKNILMIGPT 69

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APFIKVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +  +V
Sbjct: 70  GVGKTEIARRLAQLIKAPFIKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKIQKV 129

Query: 123 REQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +E+A   AEERILD LV +           +  RE+ R+KLR GE+ +K I+I++ +   
Sbjct: 130 KERAKRAAEERILDYLVPQQLSFGVREQQDTGKRELMREKLRSGELDEKVIEIDLQEKMM 189

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     P G       +  +   +M +  +K+ ++ V++    L ++E+++LIDM+ V 
Sbjct: 190 PMIGIAGPPGLEELEEQIKSMLGNMMPT--RKRRKVKVKEALSLLEQEEAEKLIDMEEVS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           RD+IQ  EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP+VEG++V TKYG + TD
Sbjct: 248 RDAIQRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPIVEGTTVKTKYGPVRTD 307

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L K DF  IL + ++ L  QY EL+K
Sbjct: 308 HILFIAAGAFHMAKPSDLIPELQGRFPIRVELSPLTKEDFVRILKEPKNALTKQYIELLK 367

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D+I+ +A +A   N+   +IGARRL TVME++LEDISF+A +++ + ++I
Sbjct: 368 TEGVEIEFTDDAIEEIARIAEEANTKTENIGARRLHTVMEKLLEDISFNAPEMEGQHIII 427

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D ++VR  + +   + ++  +IL
Sbjct: 428 DTKFVRAKLENIVRDVELSRYIL 450


>gi|152978034|ref|YP_001343663.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           succinogenes 130Z]
 gi|171472945|sp|A6VL81|HSLU_ACTSZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150839757|gb|ABR73728.1| heat shock protein HslVU, ATPase subunit HslU [Actinobacillus
           succinogenes 130Z]
          Length = 441

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 304/441 (68%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD YIIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVSELDAYIIGQSEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVG+ V+ IIRDL D+A+  +R+   ++ R +A
Sbjct: 64  TEIARRLAKLANAPFVKVEATKFTEVGYVGKEVDTIIRDLTDMAVKQIRKIEVEKNRMKA 123

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILD L+ +             S TR+VFRKKLR+G + D EI+++++   +  
Sbjct: 124 QDAAEERILDILLPRAKNKWGETEYEKDSATRQVFRKKLREGALDDSEIEVDISSQMN-- 181

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   +     KK RM V+     L+ DE+ +L++ + + + 
Sbjct: 182 VEIMTPPGMEEMTSQLQSLFEG-LSPSHSKKRRMKVKDAMKVLIDDEAAKLVNNEDLKQK 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE  GIVF+DE DKI  +    G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 241 AIESVEQNGIVFIDEIDKICKQSDRGGADVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQYKELMKTE
Sbjct: 301 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPSASLTLQYKELMKTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT D I  +A+ A ++N    +IGARRL TV+ER+++ ISF AS+   ++VVID 
Sbjct: 361 GVTVEFTPDGISKIAEAAFHVNEKTENIGARRLHTVLERLMDGISFDASERSGESVVIDE 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV   + D     D+  FIL
Sbjct: 421 KYVSEVLNDVVDNEDLSRFIL 441


>gi|217978698|ref|YP_002362845.1| ATP-dependent protease ATP-binding subunit HslU [Methylocella
           silvestris BL2]
 gi|254802312|sp|B8EM94|HSLU_METSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217504074|gb|ACK51483.1| heat shock protein HslVU, ATPase subunit HslU [Methylocella
           silvestris BL2]
          Length = 437

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 263/437 (60%), Positives = 338/437 (77%), Gaps = 5/437 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR +L   +RDE++PKNIL++GPTG 
Sbjct: 2   TDFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLRLEGSMRDEVLPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++AGAPF+KVE TKFTEIGYVGR+VEQI+RDLV+ AI++++E +R  VR 
Sbjct: 62  GKTEISRRLAKMAGAPFLKVEATKFTEIGYVGRDVEQIVRDLVETAISMIKEDKRKLVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG 183
           +A + AE+RILDALVG  A+  TR+ FRKKLR GE+ DKEI++E+A  S   +  F++P 
Sbjct: 122 KAELAAEDRILDALVGPGASPPTRDSFRKKLRAGELEDKEIEVEIAQGSGGAMPMFELPN 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA +G ++L ++F K  G G  K  RMSV+     L+ +E D+L+D D + R++I  V
Sbjct: 182 MPGAQIGAMSLGDMFGKAFGKG-GKPRRMSVKDAVEPLITEEGDKLMDQDVIVREAIVEV 240

Query: 242 ENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           EN GIVFLDE DKI  R+ S  G  VSREGVQRDLLPL+EG++V TK+G + TDHILFIA
Sbjct: 241 ENNGIVFLDEIDKICVREGSRGGADVSREGVQRDLLPLIEGANVPTKHGVVKTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFHVS+P+DLLPE+QGR P+RV L  L + DFR ILTDTE++L+ QY+ LM+TEG+ L
Sbjct: 301 SGAFHVSKPSDLLPELQGRLPIRVELAPLTEDDFRRILTDTEASLLKQYEALMRTEGVEL 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT D+++ALA +A  +NS+V +IGARRLQTVMERVL++ISFSA+D   + + IDA YV 
Sbjct: 361 SFTPDAVNALAKIAAQVNSSVENIGARRLQTVMERVLDEISFSATDRFGEKIEIDAAYVE 420

Query: 421 LHIGDFPSETDMYHFIL 437
            HIGD     D+  FIL
Sbjct: 421 QHIGDLARNADLSRFIL 437


>gi|332142914|ref|YP_004428652.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332143041|ref|YP_004428779.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|238693267|sp|B4RY96|HSLU_ALTMD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|327552936|gb|AEA99654.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327553063|gb|AEA99781.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 442

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/442 (51%), Positives = 304/442 (68%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+     +           TR+ FRKKLR G++ DKEI+I+VA     
Sbjct: 123 AEEAAEERILDVLLPPPEDAWGNKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +   +KKK ++ +++    L+ +E+ RL++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQN-LSGSQKKKKKLKIKEALKLLIEEEAARLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R+  N   VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 241 KAIESVEQHGIVFVDEIDKICKREGNNSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QY  LMKT
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTQQYIALMKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + F +  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VID
Sbjct: 361 EGVDIRFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A+YV  H+       D+  FIL
Sbjct: 421 ADYVNNHLETLVDNEDLSRFIL 442


>gi|325272527|ref|ZP_08138899.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp.
           TJI-51]
 gi|324102337|gb|EGB99811.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp.
           TJI-51]
          Length = 447

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFNEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEAGRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILREPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFVADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DETPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|126732953|ref|ZP_01748714.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
 gi|126706570|gb|EBA05646.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
          Length = 436

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 246/436 (56%), Positives = 326/436 (74%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQQ+AKRAVA+ALRNRWRR+QL   LRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQQEAKRAVAVALRNRWRRKQLTDHLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AE+R+++A+ GK A S TRE+FRKKL+ GE+    I+++VADTSS     DIPG 
Sbjct: 122 RAHAAAEDRVIEAIAGKDARSATREMFRKKLKSGELDQTVIELDVADTSSPFPMMDIPGQ 181

Query: 185 ASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
              G +   NL ++F K    GR  +  M+V + Y  L+ +E+D+L+D +TV   +++ V
Sbjct: 182 PGGGQMGMMNLGDIFGKAFA-GRTTRKSMTVAESYELLITEEADKLLDDETVKTAALEAV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCARQEARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+LK+L + DF  ILT+T++ L  QY  LM TE + + 
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLKALTEGDFVRILTETDNALTRQYTALMATEEVAVS 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT++ I+ALA +A  +N +V +IGARRL TVMERV E++SF+A D   + V +DA++V  
Sbjct: 361 FTQEGIEALARIAAEVNGSVENIGARRLYTVMERVFEELSFAAPDKAGEAVTVDADFVEA 420

Query: 422 HIGDFPSETDMYHFIL 437
            +GD    TD+  ++L
Sbjct: 421 QLGDLTRSTDLSRYVL 436


>gi|331005991|ref|ZP_08329334.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC1989]
 gi|330420167|gb|EGG94490.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC1989]
          Length = 449

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/449 (50%), Positives = 311/449 (69%), Gaps = 19/449 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV ELD++I+GQ+ AKRAVAIALRNRWRR Q+  +LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKEIVHELDKHIVGQKSAKRAVAIALRNRWRRLQVSENLRPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDLVD++I + RE    +VR +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLVDMSIKLHREQAVKKVRHR 122

Query: 126 ASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIE 168
           A   AEERIL+AL+                      S+TR++FRKKLR+G++ DKEIDIE
Sbjct: 123 AEEIAEERILNALLRPARDADGTDNSKDDEGDSGNQSSTRQLFRKKLREGDLDDKEIDIE 182

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V+     +     PG        L  +FS  M S +KK +++ +++ + +L  DE+ +L+
Sbjct: 183 VSAAKVGVEIMAPPGM-EDMTDQLQNMFSS-MSSDKKKTVKLPIKQAFKQLCDDEAAKLV 240

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           + D +   +I+  E  GIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +VSTK+
Sbjct: 241 NDDELKSQAIEAAEQNGIVFIDEIDKVAKRGDTSGGDVSREGVQRDLLPLIEGCTVSTKH 300

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I TDHILFI SGAFH+++P+DL+PE+QGR P+RV L++L+  DF  ILT+ +++L  Q
Sbjct: 301 GMIKTDHILFITSGAFHLTKPSDLIPELQGRLPIRVELEALSPDDFERILTEPDASLTEQ 360

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            + LM TEG+ L F++D I  +A+ A  +N    +IGARRL TV+ER+LEDISF +    
Sbjct: 361 QEALMATEGVALSFSKDGIRRIAETAWEVNERTENIGARRLHTVIERLLEDISFESGSNG 420

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+T+ IDAE+V   +G+   + D+  FIL
Sbjct: 421 EETINIDAEHVEKALGELVKDEDLSRFIL 449


>gi|296136675|ref|YP_003643917.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia
           K12]
 gi|295796797|gb|ADG31587.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia
           K12]
          Length = 442

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/444 (50%), Positives = 311/444 (70%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIVSELDR++IGQ  AK+AVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPREIVSELDRFVIGQVKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+   + R 
Sbjct: 61  GKTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRT 120

Query: 125 QASINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+   A S            TR++ RK+LR+G++ +KEI+I++A   
Sbjct: 121 RAEDRAEDRILDVLLPAPADSSGHTPSVTETNPTRQMLRKRLREGQLDNKEIEIDLAVHP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     PG        +  +F+  MG  R K  +++V++    L+ +E+ +L++ D +
Sbjct: 181 ASVDIMGPPGM-EDMTEQIRSMFAN-MGQTRSKTRKVTVREAQKLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVFLDE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG + T
Sbjct: 239 KAGALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T+++L  QY  L+
Sbjct: 299 DHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ ++FT D I  +A+VA  +N    +IGARRL TVMER+LE++SF A   Q  TV 
Sbjct: 359 ATDGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVK 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA  V   +GD   + D+  ++L
Sbjct: 419 VDATMVNERLGDIARDEDLSRYVL 442


>gi|126738518|ref|ZP_01754223.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
 gi|126720317|gb|EBA17023.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
          Length = 436

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/436 (57%), Positives = 335/436 (76%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI   RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAILQTREYMREDVKT 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD---I 181
           +A   AE+R+++A+ G+ A   TRE+FRKKL+ GE+ D EI++++AD+S+ + N      
Sbjct: 122 KAHKAAEDRVIEAIAGEDAREATREMFRKKLKTGELDDTEIELDLADSSNPMGNMFEVPG 181

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GA++G+LNL ++F K M  GR  + RMSV + Y  L+ +E+D+L+D + V R +++ V
Sbjct: 182 QPGANMGMLNLGDIFGKAM-GGRTIRKRMSVAQSYEVLIGEEADKLLDDEQVTRAALESV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G I TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L++ DF  ILT+T++ L LQY  LM TE + ++
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALMGTEEVEVE 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED I ALA +A  +N +V +IGARRL TV+ERV E++SF+A D   + + I+AEYV  
Sbjct: 361 FTEDGIAALAKIAAEVNQSVENIGARRLYTVIERVFEELSFTAPDRSGEKIFINAEYVGK 420

Query: 422 HIGDFPSETDMYHFIL 437
           H+G+    TD+  ++L
Sbjct: 421 HLGELSKSTDVSRYVL 436


>gi|283853296|ref|ZP_06370546.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           FW1012B]
 gi|283571336|gb|EFC19346.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           FW1012B]
          Length = 459

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/461 (47%), Positives = 311/461 (67%), Gaps = 28/461 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PREIVS+LD+Y+IGQ DAKR VAIA+RNRWRRQQ+   LRDE+ PKNI+++GPT
Sbjct: 1   MHASMTPREIVSQLDKYVIGQNDAKRMVAIAMRNRWRRQQIEPGLRDEIAPKNIIMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   D V
Sbjct: 61  GVGKTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRV 120

Query: 123 REQASINAEERILDALVGK-------------------------TATSNTREVFRKKLRD 157
             +A   AEER+LD L+ +                          A  +TRE  RK  R+
Sbjct: 121 AAKAEKAAEERLLDLLLPESQRAGANPIPMPAALEAPAPAAEPSDANLSTREKLRKLWRE 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G + D+ + +EV+  +  +    +PG   +G     ++FSK+    RKK   M V+  Y 
Sbjct: 181 GRLDDRLVPVEVSVPAPQVEMMSMPGMEEMG-SQFKDMFSKMFPQ-RKKTRNMRVRDAYE 238

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLL 276
            L+++ESDRL+DMD V   + + VE  GI+F+DE DKI   +  G+G  VSREGVQRDLL
Sbjct: 239 VLLQEESDRLVDMDKVSETAKERVEQTGIIFIDEIDKICGNKSGGSGPDVSREGVQRDLL 298

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEG  V+TK+G + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF  
Sbjct: 299 PVVEGCVVNTKHGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFYR 358

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ L +QY+ L+ TEG+ L FT++++  +AD A  +N    +IGARRL T+ME++
Sbjct: 359 ILTEPQNALTVQYRALLGTEGVDLTFTDEALREVADFARKVNEETENIGARRLYTIMEKI 418

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L D+SF ASD   + VV+D  YVR  + D   + D+  +IL
Sbjct: 419 LSDLSFEASDQSGQAVVVDPAYVRDKLKDVAEDRDLSRYIL 459


>gi|26991678|ref|NP_747103.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           KT2440]
 gi|148550077|ref|YP_001270179.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           F1]
 gi|32129620|sp|Q88D27|HSLU_PSEPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221596|sp|A5WA35|HSLU_PSEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24986777|gb|AAN70567.1|AE016699_8 heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           KT2440]
 gi|148514135|gb|ABQ80995.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           F1]
 gi|313500977|gb|ADR62343.1| HslU [Pseudomonas putida BIRD-1]
          Length = 447

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ +
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+ 
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFLADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447


>gi|322513249|ref|ZP_08066373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus
           ureae ATCC 25976]
 gi|322120956|gb|EFX92803.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus
           ureae ATCC 25976]
          Length = 440

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDSHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAENRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440


>gi|224369849|ref|YP_002604013.1| ATP-dependent protease ATP-binding subunit HslU [Desulfobacterium
           autotrophicum HRM2]
 gi|259491370|sp|C0QJ36|HSLU_DESAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|223692566|gb|ACN15849.1| HslU [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/452 (48%), Positives = 319/452 (70%), Gaps = 21/452 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P EIV ELDRYIIGQ++AK++VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   DLKPMEIVRELDRYIIGQKNAKKSVAIALRNRWRRRQVPDDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  +PF KVE +KFTE+GYVGR+VE +IRDL+++ +N ++  +++EV+E+
Sbjct: 63  KTEIARRLARLTDSPFYKVEASKFTEVGYVGRDVESMIRDLMELTVNTLKVRQQEEVQEK 122

Query: 126 ASINAEERILDALVGKTATSN--------------------TREVFRKKLRDGEISDKEI 165
           A+  AEERILD L+ ++                        TRE  RK L +G++  + +
Sbjct: 123 AAAMAEERILDLLLPESGGPEGATLTEPHLEVVSSSSSKSSTREKLRKMLNNGKLDSRFV 182

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DI+V   +S +       G     +N+ ++   ++     K+ ++ V +    L +DE+ 
Sbjct: 183 DIDVTGKASPMIEIFSNTGMEEMGINMKDMLGNLLPKN-TKRRKVKVAEAMKILTQDEAA 241

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            L+DM+ V  D+++MVE  GI+FLDE DKI  + +  G  VS+EGVQRDLLP+VEGSSV 
Sbjct: 242 HLVDMEKVTADAVEMVEQSGIIFLDEIDKIAGKGNSQGPEVSKEGVQRDLLPIVEGSSVP 301

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL K +F  ILT+ ++ L
Sbjct: 302 TKYGTVKTDHILFIASGAFHIAKPSDLIPELQGRFPIRVELTSLGKDEFVRILTEPKNAL 361

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           ILQY  L++TEG+ L+FTED+ID +A +AV++N    +IGARRL T+ME++LE+I F A 
Sbjct: 362 ILQYIALLRTEGVELEFTEDAIDKIASIAVDVNERTENIGARRLHTIMEKLLEEILFHAP 421

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D++EK +V+DA++V   + +   + D+  +IL
Sbjct: 422 DVEEKKMVVDADFVDKQLMEIVKDEDLSRYIL 453


>gi|229544388|ref|ZP_04433446.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans
           36D1]
 gi|229324873|gb|EEN90550.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans
           36D1]
          Length = 472

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/466 (43%), Positives = 309/466 (66%), Gaps = 33/466 (7%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + +PR+IV  LD+YI+GQ++AKRAVA+ALRNR+RR  L   +R+E++PKNIL++GPTG
Sbjct: 8   TNSLTPRQIVERLDQYIVGQKEAKRAVAVALRNRYRRSLLSEKMREEIIPKNILMIGPTG 67

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RR+ARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E + + VR
Sbjct: 68  VGKTEIARRMARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAVRLVKEEKMNGVR 127

Query: 124 EQASINAEERILDALVGKTATS-------------------------------NTREVFR 152
           +QA  NA ER++D LV                                       ++  R
Sbjct: 128 DQAEKNANERLVDLLVPSRKKQGNFKNPFEMIFGGGGQQDTAPDEEEEEYSKREQKQRIR 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL +GE+ D+ + +EV + +S + +     G     +++ +    ++   + K+ ++ V
Sbjct: 188 EKLLNGELEDEPVTVEVEEQASSMFDLFQGSGMEQMGMSVQDALGNLL-PKKTKRRKLPV 246

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGV 271
           ++    L +DE+ +LIDMD V +++I   E  GI+F+DE DKI +++       VSREGV
Sbjct: 247 REARKVLAQDEAQKLIDMDEVTQEAIFRAEQTGIIFIDEIDKIASKNGNGSQADVSREGV 306

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYGSI TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L  
Sbjct: 307 QRDILPIVEGSTVVTKYGSIKTDYILFIAAGAFHMAKPSDLIPELQGRFPIRVELEKLTV 366

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           SDF  IL + ++ L+ QY  L++TEGI ++F++++I  +A++A  +N    +IGARRL T
Sbjct: 367 SDFVKILVEPDNALVKQYIALLETEGIQIEFSDEAITRIAEIAFEVNQNTDNIGARRLHT 426

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ME++LED+SF A D+  + V I  +YV   +G      D+  +IL
Sbjct: 427 IMEKLLEDLSFEAPDIHLEKVSITPQYVDEKLGAISQNKDLSQYIL 472


>gi|52424327|ref|YP_087464.1| ATP-dependent protease ATP-binding subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|62286783|sp|Q65VY1|HSLU_MANSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52306379|gb|AAU36879.1| HslU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 440

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADISMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR+VFRKKLR+G++ ++EI+I++  ++ 
Sbjct: 121 KAQDAAEDRILDVLLPPAKDQWGNVQETGNASTRQVFRKKLREGQLDEREIEIDI--STP 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 179 VNVEIMTPPGMEDMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + VVI
Sbjct: 358 TEGVDIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERAGEKVVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|311030136|ref|ZP_07708226.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus sp.
           m3-13]
          Length = 466

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/467 (43%), Positives = 308/467 (65%), Gaps = 33/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PR+IV  LD+YI+GQ +AK+AVA+ALRNR+RR  L  +LRDE++PKNIL++GPT
Sbjct: 1   MSTKLTPRQIVDMLDQYIVGQTNAKKAVAVALRNRYRRSLLKGNLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +   V
Sbjct: 61  GVGKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMASV 120

Query: 123 REQASINAEERILDALVGKTATS--------------------------------NTREV 150
           +E+A  NA +R+++ LV     S                                + R  
Sbjct: 121 KEKALENANKRLVELLVPGKQKSASYKNPLEMFFGGNTNSNDTEEQEKQEEVSIKDQRRR 180

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
              +L  GE+ D+ + +EV +    + +     G     +N+ +  S +M   + KK R+
Sbjct: 181 MAHQLALGELEDRYVTVEVEEQQGSMFDMLQGSGMEQMGMNMQDALSNLMPKKK-KKRRL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++  P L  +E+ +LIDMD V ++++   E  GI+F+DE DKI  ++SG+   VSREG
Sbjct: 240 TVREARPVLAHEEAQKLIDMDEVTQEAVNRAEQNGIIFIDEIDKIAKKNSGSSADVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDH+LFI++GAFH+++P+DL+PE+QGRFP+RV L  L+
Sbjct: 300 VQRDILPIVEGSTVVTKYGQVKTDHVLFISAGAFHIAKPSDLIPELQGRFPIRVELTKLS 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL + ++ L+ QY  L++TEGI ++F++D+I  LA+VA  +N    +IGARRL 
Sbjct: 360 IDDFVRILVEPDNALLKQYTALLETEGIKVEFSDDAIRKLAEVAFQVNQDTDNIGARRLH 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A D+  + +VI  +YV   +G+     D+  FIL
Sbjct: 420 TILEKLLEDLSFEAPDINLEKIVITPKYVDEKLGNIVKNKDLSQFIL 466


>gi|160896907|ref|YP_001562489.1| ATP-dependent protease ATP-binding subunit HslU [Delftia
           acidovorans SPH-1]
 gi|160362491|gb|ABX34104.1| heat shock protein HslVU, ATPase subunit HslU [Delftia acidovorans
           SPH-1]
          Length = 445

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 309/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQ +   LR E+ PKNIL++GPT
Sbjct: 7   MSSAMTPQEIVSELDRHIVGQAGAKRAVAIALRNRWRRQNVADGLRQEITPKNILMIGPT 66

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+   RE+   ++
Sbjct: 67  GVGKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTREADMKKL 126

Query: 123 REQASINAEERILDALVGKT------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AE+RILD LV +       A +  R+VFRKKLR+G++ DKEI+I+VAD    +
Sbjct: 127 RLRAEDAAEDRILDVLVPQARSGEVAADNTARQVFRKKLREGQLDDKEIEIDVADAPPQV 186

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  MG  ++K  ++ + +    L  +E+ +L++ + V   
Sbjct: 187 QIM-GPQGMEEMAEQLRGMFSH-MGQEKRKTRKLRIAEAMKLLTDEEAAKLVNEEDVRTR 244

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I   E  GIVF+DE DK+  R   +G  +SR+GVQRDLLPLVEG+SVSTKYG + TDHI
Sbjct: 245 AIANAEQNGIVFIDEIDKVATRQETSGSDISRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 304

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TE
Sbjct: 305 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTHASLVKQYQALLATE 364

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+FT + I  LA +A ++N    +IGARRL TV+ER+L+++SF A++L  +T+ IDA
Sbjct: 365 GVTLEFTPEGITRLAGIAFDVNERTENIGARRLSTVLERLLDEVSFDAANLSGQTISIDA 424

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  FIL
Sbjct: 425 AYVDQRLQSLSQDEDLSRFIL 445


>gi|239813916|ref|YP_002942826.1| ATP-dependent protease ATP-binding subunit HslU [Variovorax
           paradoxus S110]
 gi|239800493|gb|ACS17560.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus
           S110]
          Length = 442

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/444 (48%), Positives = 309/444 (69%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPQEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVEEKLRTEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDL ++A+   RE+   +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLAEIAVKQTREAESAKVRA 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+                + TR+ FRKKLR+ ++ DKEI++++A+  
Sbjct: 121 RAEDAAEDRILDVLLPPARGAEGATPALDGPNPTRQAFRKKLREHQLDDKEIELDLAEAR 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     P G       L  +F + +G G++K  ++ + +    L+ +E+ +L++ D +
Sbjct: 181 APLEIM-GPAGMEEMTEQLRGMFGQ-LGGGKRKTRKLKIAEAMRLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I   E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++VSTKYG + T
Sbjct: 239 RTQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVSTKYGVVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF  ILT T ++L+ QY+ L+
Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ L+FT + ++ LA +A  +N    +IGARRL TVMER+L+++SF A+ ++ +T+ 
Sbjct: 359 ATEGVTLEFTPEGVNRLATIAYEVNERTENIGARRLSTVMERLLDEVSFDATRIEGQTIR 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   +     + D+  FIL
Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442


>gi|296283400|ref|ZP_06861398.1| ATP-dependent protease ATP-binding subunit HslU [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/435 (53%), Positives = 319/435 (73%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPT
Sbjct: 1   MADTLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ V
Sbjct: 61  GCGKTEISRRLARLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A ER+LDALVG  A+  TR+ FR+++    ++D E++IEV D  +   +    
Sbjct: 121 RESASEAAMERLLDALVGDNASEATRQSFRERITQNAMNDVEVEIEVQDQPATTMDIPGM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG +VG+++LS++F K MG     + ++ V + +  L+ +E+++ +D D V R ++Q  E
Sbjct: 181 GG-NVGMIDLSDMFGKAMGKKPTSRRKLRVPEAWDRLVDEEAEKRMDQDDVARVALQNAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASG
Sbjct: 240 TNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKHGPMKTDHVLFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+D+LPE+QGR P+RV L++L + DF  IL++T +NL+ QY  L+ TE + LD 
Sbjct: 299 AFHVSKPSDMLPELQGRLPIRVELRALTEEDFVRILSETRANLVQQYTALIGTEKVTLDI 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++++  +A +A  +N  V +IGARRLQTVMER++EDISF A + + +TV IDA YV   
Sbjct: 359 TDEAVREVAKIAAQVNEAVENIGARRLQTVMERLVEDISFEAEEHEGETVTIDAAYVHER 418

Query: 423 IGDFPSETDMYHFIL 437
           + D   +TD+  +IL
Sbjct: 419 LDDLARDTDLSKYIL 433


>gi|32035737|ref|ZP_00135613.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209199|ref|YP_001054424.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           pleuropneumoniae L20]
 gi|190151065|ref|YP_001969590.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249978|ref|ZP_07336180.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|166221456|sp|A3N333|HSLU_ACTP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238692357|sp|B3GYW2|HSLU_ACTP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|126097991|gb|ABN74819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189916196|gb|ACE62448.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651041|gb|EFL81195.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 440

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 310/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQAALNDVVENEDLSRFIL 440


>gi|319791658|ref|YP_004153298.1| heat shock protein hslvu, atpase subunit hslu [Variovorax paradoxus
           EPS]
 gi|315594121|gb|ADU35187.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus
           EPS]
          Length = 442

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/444 (49%), Positives = 307/444 (69%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPHEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVDEKLRSEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES   +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLAEIAVKQTRESESAKVRA 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILD L+                + TR+ FRKKLR+ ++ DKEI++++A+T 
Sbjct: 121 RAEDAAEDRILDVLLPPARGADGATAAIDGPNPTRQAFRKKLREHQLDDKEIELDLAETR 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     P G       L  +F + MG G++K  ++ + +    L+ +E+ +L++ D +
Sbjct: 181 TPLEIM-GPAGMEEMTEQLRGMFGQ-MGGGKRKTRKLKIAEALRLLIDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I   E  GIVF+DE DK+  R    G  VSR+GVQRDLLPLVEG++V+TKYG + T
Sbjct: 239 RAQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVTTKYGVVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF  ILT T ++L+ QY+ L+
Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TEG+ LDF  D +  LA +A  +N    +IGARRL TVMER+L+++SF A+ ++ +T+ 
Sbjct: 359 ATEGVTLDFQPDGVTRLASIAFEVNERTENIGARRLSTVMERLLDEVSFGAARIEGQTIR 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           IDA YV   +     + D+  FIL
Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442


>gi|221124246|ref|XP_002158924.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
 gi|260220005|emb|CBA27110.1| ATP-dependent hsl protease ATP-binding subunit hslU [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 444

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 313/443 (70%), Gaps = 14/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV+ELD++I+GQ  AKRAVAIALRNRWRRQ +   LR E+ PKNIL++GPTGVGK
Sbjct: 4   LTPQGIVAELDKHIVGQAQAKRAVAIALRNRWRRQMVEGTLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+   RES + +VR +A
Sbjct: 64  TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEIAVKQTRESEKAKVRARA 123

Query: 127 SINAEERILDALVG------------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              AE+RILD L+             +T  + TR+ FRKKLR+G+++D+EI++EVA  + 
Sbjct: 124 EDAAEDRILDILIPTPRADFGSLSAAETPENATRQAFRKKLREGQLADREIELEVAAPAP 183

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     P G       +  LF + MG G+K+  ++ ++     L  +E+ +L++ + V 
Sbjct: 184 SLDVM-GPAGMEEMTEQIRGLFGQ-MGQGKKQTRKLRIEDAAKLLADEEAAKLVNEENVK 241

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +IQM+E  GIVF+DE DK+ +R  G+G  VSR+GVQRDLLPLVEG++VSTKYG + TD
Sbjct: 242 TQAIQMLEQNGIVFIDEIDKVTSRSEGSGAEVSRQGVQRDLLPLVEGTTVSTKYGMVKTD 301

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILF+ASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++LI QY+ L+ 
Sbjct: 302 HILFVASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFEAILTQTHASLIKQYQALLA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + L FT+D I  LA +A ++N    +IGARRL TVMER+L+++SF A+ L  +TV I
Sbjct: 362 TESVQLHFTDDGITRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDATSLAGQTVHI 421

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +     + D+  FIL
Sbjct: 422 DAAYVDQRLAALSQDEDLSRFIL 444


>gi|89902204|ref|YP_524675.1| ATP-dependent protease ATP-binding subunit HslU [Rhodoferax
           ferrireducens T118]
 gi|89346941|gb|ABD71144.1| heat shock protein HslVU, ATPase subunit HslU [Rhodoferax
           ferrireducens T118]
          Length = 440

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/442 (48%), Positives = 315/442 (71%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQQ AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVFELDKHIVGQQQAKRAVAIALRNRWRRQQVEPGLRAEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+   R +   +VR +A
Sbjct: 61  TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLADIAVKQTRVAEMKKVRSRA 120

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+R+LD L+                S  R+ FRKKLR+G+++D+EI+I++A ++  
Sbjct: 121 EDAAEDRVLDVLIPPPRGDFGVVQNMEPESIARQTFRKKLREGQLADQEIEIDLAQSAPQ 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F + MG  +++  ++ + +    L+ +E+ +L++ + +  
Sbjct: 181 LEIMGPPGMEEM-TEQLRGMFGQ-MGQQKRQTRKLKIPEALKLLVEEEAAKLVNEEEIRM 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++ M+E  GIVF+DE DK+ +R  GNG  VSR+GVQRDLLPLVEG++VSTKYG + TDH
Sbjct: 239 QALHMLEQNGIVFIDEIDKVTSRAEGNGAEVSRQGVQRDLLPLVEGTTVSTKYGMVKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ T
Sbjct: 299 ILFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFVAILTQTAASLVKQYQALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F ++ I  LA +A ++N    +IGARRL TVMER+L+++SF A++L  +T+ +D
Sbjct: 359 ENVHIEFLDEGITRLAHIAFDVNERTENIGARRLSTVMERLLDEVSFDAANLGGQTIHVD 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV+  +G+   + D+  +IL
Sbjct: 419 AAYVQARLGELSQDEDLSRYIL 440


>gi|307728177|ref|YP_003905401.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1003]
 gi|307582712|gb|ADN56110.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1003]
          Length = 448

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/447 (48%), Positives = 306/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G + DKEI+++V 
Sbjct: 124 EDQAEDRILDILLPSARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +    
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSGN 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVKIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|165977172|ref|YP_001652765.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|238687516|sp|B0BSG4|HSLU_ACTPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|165877273|gb|ABY70321.1| ATP-dependent protease, ATPase subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 440

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/443 (51%), Positives = 310/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV+  + D     D+  FIL
Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440


>gi|152998125|ref|YP_001342960.1| ATP-dependent protease ATP-binding subunit HslU [Marinomonas sp.
           MWYL1]
 gi|226704529|sp|A6W2U6|HSLU_MARMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|150839049|gb|ABR73025.1| heat shock protein HslVU, ATPase subunit HslU [Marinomonas sp.
           MWYL1]
          Length = 440

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/440 (52%), Positives = 310/440 (70%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP ++R E+ PKNIL++GPTGVG
Sbjct: 3   SMTPRETVNALDNHIIGQQKAKRAVAIALRNRWRRMQLPEEMRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE    ++R +
Sbjct: 63  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETAKLRHK 122

Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AE+RILD L+            ++TR+ FRKKLR+G++ DKEIDI+VAD+   +  
Sbjct: 123 AEDAAEDRILDVLLPPARGGDPELEDNSTRQTFRKKLREGQLDDKEIDIDVADSPMGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              PG   +    L  LFS   GS + KK +M V+  + ++  +E+ +L++ + +   ++
Sbjct: 183 MTPPGMEEM-TSQLQNLFSS-FGSQKTKKRKMKVKDAFRQVRDEEAAKLVNEEELKARAV 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VE  GIVFLDE DK+      +G  VSREGVQRDLLPLVEG +VSTKYG I TDHILF
Sbjct: 241 EAVEQNGIVFLDEIDKVAKSSERSGGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L +L   DF+ IL +   +L  QY  L KTE I
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELDALTVDDFKRILVEPSMSLTKQYVALAKTEHI 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+FTE+ I  +A++A  +N    +IGARRL TV+ER+LE++S+SASD+  ++TV I A 
Sbjct: 361 NLNFTEEGIHRIAEIAFQVNERTENIGARRLHTVLERLLEEVSYSASDMPNDQTVDITAA 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   +G+     D+  +IL
Sbjct: 421 YVDEQLGEIAENEDLSQYIL 440


>gi|32491026|ref|NP_871280.1| ATP-dependent protease ATP-binding subunit HslU [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166232|dbj|BAC24423.1| hslU [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 451

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/443 (48%), Positives = 300/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L   LR E+ PKNIL++GPTGVG
Sbjct: 11  NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R    ++ R +
Sbjct: 71  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 130

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+            K   S TR+ FRKKL+  E+ DKEI+I +A T  
Sbjct: 131 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 190

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++    L+ +ES +LI+++ + 
Sbjct: 191 GVEIMAPPGMEEM-TSQLQSMFKN-LAGQKQKPRKIKIKEAMRLLIEEESAKLINLEEIK 248

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +++ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 249 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 308

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY  LM 
Sbjct: 309 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 368

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+I+ FT++ I  +A+ A  +N +  +IGARRL T++ER++E++S++AS+   K + I
Sbjct: 369 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 428

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    S+ D+  FIL
Sbjct: 429 DADYVSNHLDKLVSDEDLSRFIL 451


>gi|91762534|ref|ZP_01264499.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718336|gb|EAS84986.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002]
          Length = 455

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 334/437 (76%), Gaps = 2/437 (0%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
            L  + SPREIVSELDRY++GQ  AK+AVAIALRNRWRRQ L  ++++E++PKNIL++GP
Sbjct: 20  SLVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGP 79

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + +  +R E
Sbjct: 80  TGVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKE 139

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFD 180
           V  +A   AEE++LDALVG  A+  TRE FRK+LRDG++ D EI+IEV ++ S  +    
Sbjct: 140 VHTKAQKLAEEKVLDALVGNKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAAFEIP 199

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              GA++G++N+ E+  K     ++KK +M+V++ +  L+ DE+D+LI+ D + + +   
Sbjct: 200 GMPGANIGMINIGEMIGKS-VGNKQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA
Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF +++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L
Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D IDA+A++A  +N+TV +IGARRL T++ER+L+DISF+A+D   + ++ID+ YV+
Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438

Query: 421 LHIGDFPSETDMYHFIL 437
            ++ +   +TD+  FIL
Sbjct: 439 QNLDELVKDTDLSKFIL 455


>gi|71083041|ref|YP_265760.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062154|gb|AAZ21157.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1062]
          Length = 455

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 334/437 (76%), Gaps = 2/437 (0%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
            L  + SPREIVSELDRY++GQ  AK+AVAIALRNRWRRQ L  ++++E++PKNIL++GP
Sbjct: 20  SLVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGP 79

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + +  +R E
Sbjct: 80  TGVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKE 139

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFD 180
           V  +A   AEE++LDALVG  A+  TRE FRK+LRDG++ D EI+IEV ++ S  +    
Sbjct: 140 VHAKAQKLAEEKVLDALVGDKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAAFEIP 199

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              GA++G++N+ E+  K     ++KK +M+V++ +  L+ DE+D+LI+ D + + +   
Sbjct: 200 GMPGANIGMINIGEMIGKS-VGNKQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN GIVFLDE DKI  R   +G  VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA
Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAF +++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L
Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D IDA+A++A  +N+TV +IGARRL T++ER+L+DISF+A+D   + ++ID+ YV+
Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438

Query: 421 LHIGDFPSETDMYHFIL 437
            ++ +   +TD+  FIL
Sbjct: 439 QNLDELVKDTDLSKFIL 455


>gi|90022343|ref|YP_528170.1| ATP-dependent protease ATP-binding subunit HslU [Saccharophagus
           degradans 2-40]
 gi|123090267|sp|Q21H71|HSLU_SACD2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|89951943|gb|ABD81958.1| heat shock protein HslVU, ATPase subunit HslU [Saccharophagus
           degradans 2-40]
          Length = 438

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/438 (51%), Positives = 310/438 (70%), Gaps = 10/438 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQQDAK+AVAIALRNRWRR QL A LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIVGQQDAKKAVAIALRNRWRRMQLDAKLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLVD +I ++RE    +VR +A
Sbjct: 64  TEIARRLAKLTNAPFIKVEATKFTEVGYVGRDVESIIRDLVDSSIKMMREQEMTKVRHRA 123

Query: 127 SINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              AEERIL+AL+            S+TR++FRKKLR+G++ DKEI+I+V+ T   +   
Sbjct: 124 EEAAEERILNALLPPARGEDGAVEDSSTRQIFRKKLREGQLDDKEIEIDVSATPVGVEIM 183

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG        L  +FS  M +G+ KK +++V+K + +L  +E+ +L++ + +   +I 
Sbjct: 184 APPGM-EDMTSQLQNMFSS-MNTGKTKKTKLTVKKAFKKLTDEEAAKLVNEEELKAQAID 241

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             E  GIVF+DE DK+  R+  +G  VSREGVQRDLLPL+EG +VSTK+G I TDHILFI
Sbjct: 242 AAEQNGIVFIDEIDKVAKREGNSGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILFI 301

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFHVS+P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  Q++ L+ TEG  
Sbjct: 302 TSGAFHVSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPTASLTEQHQSLLATEGTQ 361

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           ++FT D I  +A++A  +N +  +IGARRL TV+E++LE+ISF A+   +  V IDA +V
Sbjct: 362 IEFTADGIRKIAEIAYQVNKSTENIGARRLHTVLEKLLEEISF-AAGESDNNVTIDAAFV 420

Query: 420 RLHIGDFPSETDMYHFIL 437
              +G+     D+  FIL
Sbjct: 421 DGQLGELTKNEDLSRFIL 438


>gi|31340164|sp|Q8D2S7|HSLU_WIGBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 443

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/443 (48%), Positives = 300/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R    ++ R +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 122

Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LD L+            K   S TR+ FRKKL+  E+ DKEI+I +A T  
Sbjct: 123 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +   ++K  ++ +++    L+ +ES +LI+++ + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFKN-LAGQKQKPRKIKIKEAMRLLIEEESAKLINLEEIK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +++ VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V+ P+DL+PE+QGR P+RV L +L   DF  ILT+  ++L  QY  LM 
Sbjct: 301 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+I+ FT++ I  +A+ A  +N +  +IGARRL T++ER++E++S++AS+   K + I
Sbjct: 361 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA+YV  H+    S+ D+  FIL
Sbjct: 421 DADYVSNHLDKLVSDEDLSRFIL 443


>gi|163782102|ref|ZP_02177101.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882634|gb|EDP76139.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 449

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/445 (48%), Positives = 321/445 (72%), Gaps = 11/445 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L    +P+  V EL+++++GQ++AK+AVAIALRNRWRRQ+LP  +RDE+ PKNIL++GP
Sbjct: 7   ELLEELTPKRTVEELNKFVVGQEEAKKAVAIALRNRWRRQKLPEYIRDEVAPKNILMIGP 66

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA L  APF+KVE TK+TE+GYVGR+VE ++R+L +V+  +V+  + + 
Sbjct: 67  TGVGKTEIARRLAGLIKAPFVKVEATKYTEVGYVGRDVESMVRELAEVSYQMVKREKVER 126

Query: 122 VREQASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADT 172
           VRE+A   AEERILD LV +  TS           RE  R+KLR GE+ +K I+I+V + 
Sbjct: 127 VRERARKLAEERILDYLVPQQFTSFGIRESQDAGKREELREKLRRGELDEKVIEIDVQEK 186

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     P G       L E+FS +M S   K+ ++ V++    L ++E+++LIDM+ 
Sbjct: 187 AVPMVGIAGPPGFEELENQLREMFSNLMPSK--KRRKLRVKEALHVLEQEEAEKLIDMEE 244

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V R+++   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP++EG++V+TKYG++ 
Sbjct: 245 VAREAVFRAENFGIIFIDEIDKIAVKTPGTGPGVSREGVQRDLLPILEGTTVNTKYGAVK 304

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF  ILT+ E+ L  QY EL
Sbjct: 305 TDHILFIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFVKILTEPENALTKQYIEL 364

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTEG+ ++FTED+I+ +A ++ + N+   +IGARRL TVMER+LEDISF+A D+  + +
Sbjct: 365 LKTEGVEIEFTEDAIEEIARISEDANNRTENIGARRLHTVMERLLEDISFNAPDMSGQHI 424

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +ID+++VR  +     + ++  +IL
Sbjct: 425 IIDSKFVRAKLEGIVKDEELSRYIL 449


>gi|257464769|ref|ZP_05629140.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           minor 202]
 gi|257450429|gb|EEV24472.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus
           minor 202]
          Length = 440

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNASTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|295675157|ref|YP_003603681.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1002]
 gi|295435000|gb|ADG14170.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1002]
          Length = 448

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 213/447 (47%), Positives = 310/447 (69%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G++ DKEI+++V 
Sbjct: 124 GDLAEDRILDILLPTARPVGFGSSTSSTDTADEGSTTRQTFRKRLREGQLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKSKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   +
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|294340809|emb|CAZ89204.1| ATP-dependent hsl protease ATP-binding subunit hslU (Heat shock
           protein hslU) [Thiomonas sp. 3As]
          Length = 440

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR++IGQ  AK+AVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDRFVIGQAKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+   + R +A
Sbjct: 61  TEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRTRA 120

Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+   A S            TR++ RK+LR+G++ +KEI+I++A   + 
Sbjct: 121 EDRAEDRILDVLLPAPADSSGHTPSVTENNPTRQMLRKRLREGQLDNKEIEIDLAVHPAS 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG        +  +F+  +G  R+K  +++V++    L+ +E+ +L++ D +  
Sbjct: 181 VDIMGPPGM-EDMTEQIRSMFAN-LGQTRRKTRKVTVREAQKLLIDEEAAKLVNEDEIKA 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +++ VE  GIVFLDE DK+ +R    G  VSR+GVQRDLLPLVEG++VSTKYG + TDH
Sbjct: 239 GALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T+++L  QY  L+ T
Sbjct: 299 ILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G+ ++FT D I  +A+VA  +N    +IGARRL TVMER+LE++SF A   Q  TV +D
Sbjct: 359 DGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVKVD 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A  V   +GD   + D+  ++L
Sbjct: 419 AAMVNERLGDIARDEDLSRYVL 440


>gi|291280524|ref|YP_003497359.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter
           desulfuricans SSM1]
 gi|290755226|dbj|BAI81603.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter
           desulfuricans SSM1]
          Length = 441

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/441 (51%), Positives = 325/441 (73%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV+ELD+YI+GQ+ AK+AVAIALRNRWRR QLP  L+DE+ PKNI+++GPTGVG
Sbjct: 3   NLTPKQIVAELDKYIVGQKSAKKAVAIALRNRWRRLQLPEKLQDEIAPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PFIKVE +KFTE+GYVGR+VE +IRDL ++AIN+V+  +++EVRE+
Sbjct: 63  KTEIARRLAKLTKSPFIKVEASKFTEVGYVGRDVESMIRDLTEIAINLVKSEKKNEVREK 122

Query: 126 ASINAEERILDALVGKTA-------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A  NAEERILD L+ + +          TRE FRK LRDG++ D+ ++I+V D    I  
Sbjct: 123 AKKNAEERILDLLLPRPSGFASTPSDDETREKFRKMLRDGKLDDRFVEIDVEDAGPQIEV 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               G   +G+ NL ++F  +   G+KKK ++ +++    L   E+++LIDMD V   +I
Sbjct: 183 LTNVGMEDLGV-NLQDMFKNLF-PGKKKKKKIKIKEALEVLEMQEANKLIDMDEVKALAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           + VE  GIVF+DE DK+ +RDSG+  G  VSREGVQRDLLP++EGS+V TKYG + TDHI
Sbjct: 241 KRVEQSGIVFIDEIDKVCSRDSGSYKGADVSREGVQRDLLPIIEGSTVMTKYGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL K DF  ILT+ E+ L  QYK L+  +
Sbjct: 301 LFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFVRILTEPENALTKQYKALLAAD 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ +++T+D I+ +A++A  +N T  +IGARRL T+ME++LE+ISF A D++ K +VIDA
Sbjct: 361 GVEIEYTQDGIEKIAEIATYVNKTNENIGARRLHTIMEKLLEEISFEAPDIENKQIVIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV   +     + ++  ++L
Sbjct: 421 KYVEEKLTGIIRDENLTKYVL 441


>gi|254360691|ref|ZP_04976840.1| arginine ABC superfamily ATP binding cassette transporter, ABC
           protein [Mannheimia haemolytica PHL213]
 gi|1346415|sp|P32180|HSLU_PASHA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|387857|gb|AAA25534.1| ATP-binding protein [Mannheimia haemolytica]
 gi|153091231|gb|EDN73236.1| arginine ABC superfamily ATP binding cassette transporter, ABC
           protein [Mannheimia haemolytica PHL213]
          Length = 440

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/443 (51%), Positives = 308/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ + 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR+ FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++I
Sbjct: 358 TEGVEIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  FIL
Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440


>gi|229587959|ref|YP_002870078.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens SBW25]
 gi|259491377|sp|C3K8V3|HSLU_PSEFS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229359825|emb|CAY46675.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens SBW25]
          Length = 445

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/448 (51%), Positives = 317/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V  
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKLLREQEMTKVSH 120

Query: 125 QASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+              + SNTR++FRK+LR+G++ DKEI+IEVA+ S
Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPASDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               +   P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + +
Sbjct: 181 G--VDISAPPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL      
Sbjct: 358 KTEGLGIEFQPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGAQNG 417

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + IDA+YV  H+G+     D+  +IL
Sbjct: 418 EVIKIDADYVNSHLGELAQNEDLSRYIL 445


>gi|170719649|ref|YP_001747337.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida
           W619]
 gi|229486078|sp|B1J2T7|HSLU_PSEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|169757652|gb|ACA70968.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida
           W619]
          Length = 447

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/450 (51%), Positives = 315/450 (70%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAMKMLREQEIIRVRH 120

Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+RILDAL+ +             ++ SNTR++FRK+LR+G++ DKEI+IEVAD
Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
                     P G       L  LF+  MG G++K  ++ V++    +  +E+ RL++ D
Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNDD 237

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G +
Sbjct: 238 DLKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL +  ++L  QY+E
Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYRE 357

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407
           L+KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL    
Sbjct: 358 LLKTEGLNIEFKADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E  + IDA YV  H+G+     D+  +IL
Sbjct: 418 DEAPIQIDAAYVNGHLGELAQNEDLSRYIL 447


>gi|167856216|ref|ZP_02478952.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219871415|ref|YP_002475790.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus
           parasuis SH0165]
 gi|254802308|sp|B8F690|HSLU_HAEPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167852671|gb|EDS23949.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219691619|gb|ACL32842.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           SH0165]
          Length = 440

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/443 (51%), Positives = 309/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL +V++ +VR+   ++ R 
Sbjct: 61  GKTEIARRLAKLADAPFIKVEATKFTEVGYVGKEVDSIIRDLANVSMKLVRQQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR++FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNTSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VI
Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDSISFDASERSGEKIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440


>gi|325982875|ref|YP_004295277.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas
           sp. AL212]
 gi|325532394|gb|ADZ27115.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas
           sp. AL212]
          Length = 440

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVHELDKHIIGQNSAKRAVAIALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + A+   RE    + +  A
Sbjct: 61  TEIARRLAKLAHAPFIKIEATKFTEVGYVGRDVDSIIRDLAETAVKESRERETRKKQPLA 120

Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
             +AE+RILDAL+                + TR+ FRKKLR+GE+ DKEI+IEVA + + 
Sbjct: 121 EDHAEDRILDALLPGSRDFGAQMNTDDHNNLTRQKFRKKLREGELDDKEIEIEVAASRAS 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +  F  PG        +  +F   M   RKK  ++++++    L+ +E+ ++++ + +  
Sbjct: 181 MEIFAPPGM-EDLTSQIQGMFQN-MTGERKKTRKLTIREAKKILLEEEAAKMVNDEELKL 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++Q VE  GIVFLDE DKI +R +  G  VSR+GVQRDLLPLVEG++VSTKYG I TDH
Sbjct: 239 SALQNVEQNGIVFLDEIDKIASRANNAGGDVSRQGVQRDLLPLVEGTTVSTKYGMIKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ SDF  ILT+T++ L  QY+ L+ T
Sbjct: 299 ILFIASGAFHMSKPSDLIPELQGRFPIRVELGSLSVSDFEQILTNTDACLTRQYEALLAT 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F  D+I  LA++A ++NS   +IGARRL TV+E++LE++S++A     +T+VI+
Sbjct: 359 EGVTLQFGGDAIKRLAEIAHSVNSKTENIGARRLHTVIEKLLEEVSYNAPKHSGETLVIN 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + D     D+  ++L
Sbjct: 419 AAYVDERLKDLSQSEDLARYVL 440


>gi|323524456|ref|YP_004226609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1001]
 gi|323381458|gb|ADX53549.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           CCGE1001]
          Length = 448

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/447 (48%), Positives = 307/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G + DKEI+++V 
Sbjct: 124 EDQAEDRILDILLPTARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   K
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSGK 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALSEVAEDEDLSRYVL 448


>gi|85372871|ref|YP_456933.1| ATP-dependent protease ATP-binding subunit HslU [Erythrobacter
           litoralis HTCC2594]
 gi|84785954|gb|ABC62136.1| ATP-dependent protease HslVU ATPase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 433

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/435 (53%), Positives = 325/435 (74%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRR QL A+LRDE+ PKNIL++GPT
Sbjct: 1   MTEALTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRLQLGAELRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ V
Sbjct: 61  GCGKTEISRRLAKLAEAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A ER+LDALVG  A+  TRE FR+++    ++D E+++EV+D+ S        
Sbjct: 121 REAASTAAMERLLDALVGDNASEATRESFRERVVQNAMNDVEVEVEVSDSPSMPMEIPGL 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG +VG+++LS++  K +G   KK+ ++ V   + +L+ +E+++ +D D V R +++  E
Sbjct: 181 GG-NVGMIDLSDMMGKALGRNNKKRRKLKVPDAWDKLVEEEAEKRMDQDDVSRVALENAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIASG
Sbjct: 240 TNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKHGPMKTDHVLFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHVS+P+D+LPE+QGR P+RV L++L   DF  IL++T +NL+ QYK L+ TE + ++ 
Sbjct: 299 AFHVSKPSDMLPELQGRLPIRVELRALEIEDFVRILSETRANLVEQYKALLGTEDVTVEI 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+I  +A +A  +N +V +IGARRLQTVMER+LE++SF A + + +T+VIDA YV+  
Sbjct: 359 TDDAIREVATIAAQVNESVENIGARRLQTVMERLLEELSFEAEEHKGETIVIDAAYVKDK 418

Query: 423 IGDFPSETDMYHFIL 437
           + +   ++D+  +IL
Sbjct: 419 LSELAEDSDLSKYIL 433


>gi|330818651|ref|YP_004362356.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
 gi|327371044|gb|AEA62400.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
          Length = 447

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/446 (48%), Positives = 312/446 (69%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AE+RILD L+ +                 + TR+ FRK+LR+G + DKE+++++   
Sbjct: 124 QDQAEDRILDILLPQPRAVGFGSNSETANDDNNATRQTFRKRLREGALDDKEVELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    +  +FS + G G+K + ++ +++    L  +E+ +L++ + 
Sbjct: 184 QAGMDIMAPPGMEEM-TEQIRSMFSNI-GGGKKTRRKVKIKEALKLLSDEEAAKLLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++V+TKYG I
Sbjct: 242 VKTRAVQNVEQNGIVFLDEIDKIASRNNEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LED+SF+A +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGEA 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|307257824|ref|ZP_07539581.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863730|gb|EFM95656.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 438

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 309/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVRTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438


>gi|255038554|ref|YP_003089175.1| ATP-dependent protease ATP-binding subunit HslU [Dyadobacter
           fermentans DSM 18053]
 gi|254951310|gb|ACT96010.1| heat shock protein HslVU, ATPase subunit HslU [Dyadobacter
           fermentans DSM 18053]
          Length = 463

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 212/457 (46%), Positives = 297/457 (64%), Gaps = 27/457 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV ELD+YIIGQ DAKR VAIALRNRWRR   P D++ E++P NIL++G TGVGK
Sbjct: 8   LTPRQIVFELDQYIIGQNDAKRNVAIALRNRWRRMNSPEDIQREIIPNNILMIGATGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VR  +++EV+ +A
Sbjct: 68  TEIARRLAKIADAPFVKVEASKFTEVGYVGRDVESMVRDLVEQAVGMVRTQKKEEVKIKA 127

Query: 127 SINAEERILDALVGKTA-----------------------TSNTREVFRKKLRDGEISDK 163
               E+ ILDAL+                              TRE FR+K+R+GE+  +
Sbjct: 128 EQAVEDIILDALIPPVHGSGGTRPLPDNGSEEMPQSDAELNQRTRERFREKIRNGELDSR 187

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +I+IEV                 V ++N+ E+   +M   R KK +++V++    L+ +E
Sbjct: 188 KIEIEVQQNQMPNVGMIGGAVDDVSMMNIQEMIGNMMPR-RGKKRKVTVEEARKLLLDEE 246

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGS 282
           + +LIDMD V  ++I+  EN GI+F+DE DK+ + R  G+G  VSREGVQRDLLP+VEGS
Sbjct: 247 ASKLIDMDEVKLEAIKKAENLGIIFIDEIDKVASSRSGGSGPDVSREGVQRDLLPIVEGS 306

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           SV+TK+G I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF  IL   +
Sbjct: 307 SVNTKHGVIQTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEGDFYQILKAPK 366

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QY  +M+ EG+ LDF + ++  +A +A  +NS V +IGARRLQTVM  +L D  F
Sbjct: 367 NALTKQYGAMMEAEGVELDFEDGALREIARIAFEVNSEVENIGARRLQTVMSSLLNDFMF 426

Query: 403 SASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              D+      + I AE V   +       D+  +IL
Sbjct: 427 DIPDMIGDGSQITITAEMVEQKLSALVKNRDLSQYIL 463


>gi|121611469|ref|YP_999276.1| ATP-dependent protease ATP-binding subunit HslU [Verminephrobacter
           eiseniae EF01-2]
 gi|166221615|sp|A1WRK1|HSLU_VEREI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|121556109|gb|ABM60258.1| heat shock protein HslVU, ATPase subunit HslU [Verminephrobacter
           eiseniae EF01-2]
          Length = 441

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/442 (49%), Positives = 300/442 (67%), Gaps = 11/442 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIVSELD++I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 2   TSMTPQEIVSELDKHIVGQSSAKRAVAIALRNRWRRQQVQGSLRQEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+   RES   +VR 
Sbjct: 62  GKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLADMAVKQTRESEMKKVRA 121

Query: 125 QASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +A   AE+RILD L+            A   TR++FRKKLR+G + DK+I+I+V ++   
Sbjct: 122 RAEDAAEDRILDVLIPPPRGADGAEPAADGTTRQMFRKKLREGLLDDKDIEIDVTESRPH 181

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     P G       L  +FS+  G  +++  ++ + +    L  +E+ +L++ + +  
Sbjct: 182 LEIM-GPQGMEEMTEQLRSMFSQ-FGQDKRRTRKLKIAEAMKLLTDEEAGKLVNEEEIKT 239

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++   E  GIVF+DE DK+  R   +G  VSR+GVQRDLLPLVEG++VSTKYG I TDH
Sbjct: 240 RALANAEQNGIVFIDEIDKVATRQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMIKTDH 299

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL+  DF  ILT T ++L+ QY+ L+ T
Sbjct: 300 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLSVQDFEAILTQTHASLVKQYQALLAT 359

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L F    I  LA +A  +N    +IGARRL TVMER+L+++SF A+ L  +TV ID
Sbjct: 360 EDVTLAFVPQGITRLACIAFEVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVTID 419

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +       D+  +IL
Sbjct: 420 EGYVDQRLQQLSLNEDLSRYIL 441


>gi|221065128|ref|ZP_03541233.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni KF-1]
 gi|264680256|ref|YP_003280166.1| heat shock protein HslVU, ATPase HslU [Comamonas testosteroni
           CNB-2]
 gi|299533128|ref|ZP_07046513.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas
           testosteroni S44]
 gi|220710151|gb|EED65519.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni KF-1]
 gi|262210772|gb|ACY34870.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas
           testosteroni CNB-2]
 gi|298718905|gb|EFI59877.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas
           testosteroni S44]
          Length = 439

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/441 (51%), Positives = 311/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELD++I+GQ  AKRAV+IALRNRWRRQQ+P  LR E+ PKNIL++GPT
Sbjct: 1   MSSAMTPQEIVSELDKHIVGQHGAKRAVSIALRNRWRRQQVPEGLRQEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+   RES   ++
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTRESDMKKM 120

Query: 123 REQASINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AEERILD L+ +       A +  R+VFRKKLR+G++ DKEI+I++A+    +
Sbjct: 121 RARAEDAAEERILDVLIPQARTGEVPADNTARQVFRKKLREGQLDDKEIEIDIAEQMPQV 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  MG  ++K  ++ + +    L  +E+ ++++ + V   
Sbjct: 181 QIM-GPQGMEEMAEQLRGMFSH-MGQEKRKTRKLKIAEALKLLTDEEAAKMVNEEDVKTR 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I   E  GIVF+DE DK+  R   +G  VSR+GVQRDLLPLVEG+SVSTKYG + TDHI
Sbjct: 239 AIANAEQNGIVFIDEIDKVATRQETSGSDVSRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  IL  T ++L+ QY+ L+ TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILMQTHASLVKQYQALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+F  + I  LA +A ++N +  +IGARRL TVMER+L+++SF A+ L  +TVVIDA
Sbjct: 359 GVTLEFKPEGITRLATIAFDVNESTENIGARRLSTVMERLLDEVSFDAAKLSGQTVVIDA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +     + D+  FIL
Sbjct: 419 AYVDQRLQVLSKDEDLSRFIL 439


>gi|307246664|ref|ZP_07528734.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248792|ref|ZP_07530805.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307253408|ref|ZP_07535279.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255649|ref|ZP_07537453.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260100|ref|ZP_07541811.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262228|ref|ZP_07543878.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264429|ref|ZP_07546015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306852364|gb|EFM84599.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854719|gb|EFM86909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859087|gb|EFM91129.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861326|gb|EFM93316.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865834|gb|EFM97711.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868102|gb|EFM99928.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870245|gb|EFN02003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 438

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 309/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQAALNDVVENEDLSRFIL 438


>gi|304404239|ref|ZP_07385901.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           curdlanolyticus YK9]
 gi|304347217|gb|EFM13049.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           curdlanolyticus YK9]
          Length = 465

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 208/464 (44%), Positives = 307/464 (66%), Gaps = 31/464 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             + +PR+IV+ELD+YIIGQ+ AKR+VAIALRNR+RR +L  +LRDE++PKNIL++GPTG
Sbjct: 3   NESMTPRQIVAELDKYIIGQKQAKRSVAIALRNRYRRSRLSEELRDEIVPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+  R + V+
Sbjct: 63  VGKTEIARRLAKLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAERTERVK 122

Query: 124 EQASINAEERILDALVGKTATSNT------------------------------REVFRK 153
           ++A + A ERI+  LV     S T                              R+  ++
Sbjct: 123 DRAEVLANERIVALLVPSATKSKTQKNPFEMLFGGQQGKESEPEPEYDSSVSEQRKAAKE 182

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++ I+IEV D + ++ +            N+ +L  + M   R KK ++ ++
Sbjct: 183 KLAAGLLENEMIEIEVEDNTPNMMDMLSGQPGEGMGANMQDLLGQFM-PKRTKKRKLKIK 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E+ +LIDMD V  +S+   E  GI+F+DE DKI +   G+G  VSREGVQR
Sbjct: 242 EARKALIQEEATKLIDMDDVITESVLRAEQSGIIFIDEIDKIASPSRGSGPDVSREGVQR 301

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TD++LF+A+GAFHV++P+DL+PE+QGRFP+RV L SL+  D
Sbjct: 302 DILPIVEGSTVMTKYGPVKTDYVLFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLED 361

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL + ++ L  QY  L++TEGI +DF++++I  LA +A ++N    +IGARRL T++
Sbjct: 362 FVKILQEPKNALTKQYSALLETEGIAIDFSDEAIRELASIAADVNKNTENIGARRLHTIL 421

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A DL  + + I  EYV+  +       D+  +IL
Sbjct: 422 EKLLEDLSFEAPDLNLERITITPEYVKEKLSSIAQNRDLSQYIL 465


>gi|319649572|ref|ZP_08003728.1| ATP-dependent protease ATP-binding subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317398734|gb|EFV79416.1| ATP-dependent protease ATP-binding subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 467

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/468 (44%), Positives = 304/468 (64%), Gaps = 32/468 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    N +PR+IV  LD++IIGQ+DAK+AVA+ALRNR+RR  L   LRDE+ PKNIL++G
Sbjct: 1   MGKGTNLTPRQIVERLDQFIIGQKDAKKAVAVALRNRYRRSLLEEKLRDEVNPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  
Sbjct: 61  PTGVGKTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMA 120

Query: 121 EVREQASINAEERILDALVGKTAT------------------------------SNTREV 150
            V+E+A  +A  RIL+ LV                                      R++
Sbjct: 121 SVKERAEESANRRILELLVPGAKKAANYKNPLEMLFGGGNDQQQDTYQTEDLNLQEKRKI 180

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            ++KL  GE+ ++ I +EV +    + +     G     +N+ +  S +M   R KK ++
Sbjct: 181 VKEKLALGELENEVITVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSSLMPKKR-KKRKL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSRE 269
           +V++    L  +E+ +LIDMD V ++++   E  GI+F+DE DKI +++SG +   VSRE
Sbjct: 240 TVREARKILTNEEAQKLIDMDEVGQEAVFRAEQSGIIFIDEIDKIASKNSGGSSADVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L
Sbjct: 300 GVQRDILPVVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
              DF  IL + ++ LI QY+ L+ TEGI ++F++D+I  +A  A  +N    +IGARRL
Sbjct: 360 TVEDFYKILVEPDNALIKQYEALLVTEGIQIEFSDDAIRRIAQFAFEVNQNTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T+ME++LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 420 HTIMEKLLEDLSFEAPDVTMEKITITPQYVEEKLGAISRNKDLSQFIL 467


>gi|308068648|ref|YP_003870253.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa E681]
 gi|305857927|gb|ADM69715.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa E681]
          Length = 466

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/465 (44%), Positives = 313/465 (67%), Gaps = 32/465 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTG
Sbjct: 3   NQSLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+  R + V+
Sbjct: 63  VGKTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKTERTENVK 122

Query: 124 EQASINAEERILDALVGKTATS-------------------------------NTREVFR 152
           ++A   A ERI+  LV    ++                                 R   +
Sbjct: 123 DKAEDMANERIVSILVPAEKSNKSQRNPFEMLFGNNTGASVEEEPPQQDGSLAEKRRKVK 182

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L  G++ D  I+I+V DT+ ++ +     G     +N+ E+F   +   R KK ++ V
Sbjct: 183 FDLLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMGMNMQEMFGSFL-PKRTKKRKLPV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L++DE+ +LIDMD V ++S++  E  GI+F+DE DKI ++  G+G  VSREGVQ
Sbjct: 242 KEARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL   
Sbjct: 302 RDILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLD 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           +F  ILT+ ++ L  QY +L++TE I ++F+ ++I  +A +A ++N    +IGARRL T+
Sbjct: 362 EFVSILTEPKNALTKQYTDLLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    ++I  EYVR  +GD     D+  +IL
Sbjct: 422 LEKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466


>gi|261491846|ref|ZP_05988425.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494683|ref|ZP_05991163.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309648|gb|EEY10871.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312501|gb|EEY13625.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 440

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 307/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+   ++ + 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR+ FRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+  I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++I
Sbjct: 358 TEGVEIEFTKGGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV   + D     D+  FIL
Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440


>gi|77456624|ref|YP_346129.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           fluorescens Pf0-1]
 gi|123758526|sp|Q3KJB6|HSLU_PSEPF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77380627|gb|ABA72140.1| ATP-dependent hsl protease ATP-binding subunit hslu [Pseudomonas
           fluorescens Pf0-1]
          Length = 445

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/448 (52%), Positives = 313/448 (69%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE     VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMLREQEMTRVRH 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+             T  SNTR++FRK+LR+G++ DKEI+IEVA+  
Sbjct: 121 RAEDAAEDRILDALLPPARMGFSNEEAPTQDSNTRQLFRKRLREGQLDDKEIEIEVAE-- 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                   P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + +
Sbjct: 179 MAGIEIATPPGMEEMTNQLQNLFAN-MGKGKKKARKLKVKEALKLVRDEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G  VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY  L+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYCALL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ + F  + I  LA++A  +N    +IGARRL T++ER+LE++SFSA DL     +
Sbjct: 358 KTEGLNIQFQPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHDD 417

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           K + IDAEYV  H+G+     D+  +IL
Sbjct: 418 KAIQIDAEYVNSHLGELAQNEDLSRYIL 445


>gi|307251032|ref|ZP_07532956.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856862|gb|EFM88994.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 438

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 309/441 (70%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R +A
Sbjct: 61  TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120

Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S  
Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + + 
Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHI
Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTE
Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF AS+   + +VID 
Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  + D     D+  FIL
Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438


>gi|82703661|ref|YP_413227.1| ATP-dependent protease ATP-binding subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|123768130|sp|Q2Y5Y6|HSLU_NITMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|82411726|gb|ABB75835.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosospira
           multiformis ATCC 25196]
          Length = 443

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++IIGQ  AKR+VAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 3   QLTPREIVHELDKHIIGQDAAKRSVAIALRNRWRRQQVQDPLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ A+   RE    ++R +
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEAAVKQSRERETQKMRAR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A  +AEERILD L+              A S TR+ FRKKLR+GE++DKEI+IE+A   +
Sbjct: 123 AEDHAEERILDVLLPVARETGLQMDSIEAESATRQKFRKKLREGELNDKEIEIELATPHT 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +  F  PG   +    +  +F   +G+ RK+  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 HMEIFAPPGMEEL-TTQIQGMFQN-LGAERKRMRKLKIREAMKLLIDEEASKLVNDEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++Q VE  GIVFLDE DKI +R   +G  VSR+GVQRDLLPLVEG+++STKYG I TD
Sbjct: 241 LRAVQNVEQNGIVFLDEIDKITSRSETSGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT+T++ L  QY+ L++
Sbjct: 301 HILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSAGDFVQILTNTDACLKRQYEALLE 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ L+FT D++  LA++A  +N    +IGARRL T ME++LED+SF A       VVI
Sbjct: 361 TEGVRLEFTPDAVKRLAEIAFAVNEKTENIGARRLYTAMEKLLEDVSFDAEKHHGDAVVI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +GD     D+  ++L
Sbjct: 421 DAAYVDKRLGDLAQSEDLARYVL 443


>gi|257095384|ref|YP_003169025.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047908|gb|ACV37096.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 443

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPQEIVYELDKHIVGQGKAKKAVAIALRNRWRRAQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE +KFTE+GYVGR+VE IIRDLV++A+   RE     VR +A
Sbjct: 64  TEIARRLARLANAPFIKVEASKFTEVGYVGRDVETIIRDLVEIAVKSGREQAVKGVRARA 123

Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              AE+RILD L+             +  S TR+ FRK+LR+GE+ DKEI++EVA  S  
Sbjct: 124 EDAAEDRILDVLLPPARGNFFNDAQSSEDSATRQKFRKRLREGELDDKEIEVEVAAPSMQ 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              F  PG   +    +  +F  + G GRKK  ++ + +    L+ +E+ + ++ + V  
Sbjct: 184 AEIFAPPGMEEL-TAQIQGMFQNI-GGGRKKSRKLKISEARKFLIDEEAAKQVNDEEVKL 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++++ VE  GIVFLDE DKI +R   +G+ VSR+GVQRDLLPLVEG++VSTKYG I TDH
Sbjct: 242 EAVRNVEQNGIVFLDEIDKIASRSDTHGVDVSRQGVQRDLLPLVEGTTVSTKYGMIRTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  QY+ L+ T
Sbjct: 302 VLFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTKQYQALLAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ LDF  + +  LA++A ++N    +IGARRL TVMER+LE++SFSA       V ID
Sbjct: 362 EGVTLDFAAEGVKRLAEIAWSVNERTENIGARRLYTVMERLLEEVSFSAGKEASDLVAID 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +     D+  ++L
Sbjct: 422 ATYVDSRLAELAENEDLSRYVL 443


>gi|329891071|ref|ZP_08269414.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           diminuta ATCC 11568]
 gi|328846372|gb|EGF95936.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           diminuta ATCC 11568]
          Length = 435

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 257/434 (59%), Positives = 336/434 (77%), Gaps = 1/434 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR  V+ 
Sbjct: 62  GKTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDKRRSGVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERILDALVG  +   TRE FRKKLR GE+ DKEI+I +ADT+S +   D+PGG
Sbjct: 122 RAEGQAEERILDALVGPGSQPATREAFRKKLRAGELDDKEIEIALADTTSPLQGLDMPGG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                L         MG GR K ++++V+     L+ +ESD+L+D +++ ++++ + EN 
Sbjct: 182 GGNVGLLNLSEMLGKMGGGRTKTVKLTVRDALAPLVTEESDKLLDQESLTKEALLLAENE 241

Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVFLDE DK+ AR D G G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGA
Sbjct: 242 GIVFLDEIDKVAARQDRGGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGA 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TEG+ L FT
Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEGVELVFT 361

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+++A+AD AV  NSTV +IGARRLQTVMERVLE+ SF ASDL  +T++ D + VR  +
Sbjct: 362 DDAVEAMADAAVAANSTVENIGARRLQTVMERVLEETSFKASDLSGQTLIFDGDKVREKV 421

Query: 424 GDFPSETDMYHFIL 437
           GD     D+  FIL
Sbjct: 422 GDLAKNVDLSRFIL 435


>gi|85710347|ref|ZP_01041412.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
 gi|85689057|gb|EAQ29061.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
          Length = 433

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/435 (53%), Positives = 323/435 (74%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPT
Sbjct: 1   MTDNLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD V
Sbjct: 61  GCGKTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDSV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A ER+L ALVG  A+  TRE FR+++    ++D E++I+V + S+   +    
Sbjct: 121 REAASEAAMERLLTALVGDNASEATRESFRQRITQNAMNDVEVEIDVVEASNTPFDMGNM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG ++ +++LS++  K  G    KK ++ V   + +L+ +E+D+ +D D V + +++  E
Sbjct: 181 GG-NMQMIDLSDMMGKAFGKKPTKKRKLRVPDAWDKLVDEEADKRLDDDDVAQTALRNAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASG
Sbjct: 240 TNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+D+LPE+QGR P+RV+L++L + DF  IL++T +NL+ QY+ L+ TE + LD 
Sbjct: 299 AFHVAKPSDMLPELQGRLPIRVNLRALTQEDFVRILSETRANLVEQYRALIGTEKVELDI 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +++ID +A +A  +N +V +IGARRLQTVME++LE+ISF A + + +T+ IDA YVR  
Sbjct: 359 KKEAIDEVATIAAQVNESVENIGARRLQTVMEKLLEEISFEAEEHEGETITIDAAYVRER 418

Query: 423 IGDFPSETDMYHFIL 437
           +GD   + D+  +IL
Sbjct: 419 LGDLAGDADLSKYIL 433


>gi|124268574|ref|YP_001022578.1| ATP-dependent protease ATP-binding subunit HslU [Methylibium
           petroleiphilum PM1]
 gi|124261349|gb|ABM96343.1| heat shock protein HslVU, ATPase subunit HslU [Methylibium
           petroleiphilum PM1]
          Length = 448

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/450 (50%), Positives = 310/450 (68%), Gaps = 21/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELDR+I+GQQDAKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDRHIVGQQDAKRAVAIALRNRWRRQQVDDRLRPEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDLVD+A+   RE+     R +A
Sbjct: 61  TEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLVDLAVKQTREAAIRAHRVRA 120

Query: 127 SINAEERILDALVGKTA------------------TSNTREVFRKKLRDGEISDKEIDIE 168
              AEERILD L+   A                   S  R+ FRK+LR+G + DKEI++E
Sbjct: 121 EDAAEERILDVLLPPPAHAGAGFGLSTSSPAPAPADSTARQTFRKRLREGTLDDKEIELE 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +A+  + +     PG   +    L  +F+  +G  R+K  ++ + +    L+ +E+ +L+
Sbjct: 181 LAEPRAAVELLGPPGMEDMA-EQLKGMFAS-LGQTRRKTRKLKIAEALKLLVDEEAAKLV 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287
           + D +   ++   E  GIVF+DE DK+ +R  G +G  VSR+GVQRDLLPLVEG++VSTK
Sbjct: 239 NEDEIKTQALASAEQNGIVFIDEIDKVTSRGDGASGAEVSRQGVQRDLLPLVEGTTVSTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           +G++ TDHILFIASGAFH++RP+DL+PE+QGRFP+RV L SL   DF  ILT T ++L+ 
Sbjct: 299 HGTVKTDHILFIASGAFHLARPSDLIPELQGRFPIRVELGSLRVEDFEAILTQTHASLVR 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ LDF  + +  LA +A ++N    +IGARRL TVMER+L+++SF A +L
Sbjct: 359 QYQALLDTEGVRLDFRPEGVRRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDAPNL 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +T+ IDA YV   +G    + D+  FIL
Sbjct: 419 GGQTIAIDAAYVDRKLGALAVDEDLSRFIL 448


>gi|310822320|ref|YP_003954678.1| hslu-like protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395392|gb|ADO72851.1| HslU-like protein [Stigmatella aurantiaca DW4/3-1]
          Length = 465

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/456 (46%), Positives = 313/456 (68%), Gaps = 25/456 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQ++  DLR+E+ PKNI+++GPTGVGK
Sbjct: 10  FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE   ++V+ +A
Sbjct: 70  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 129

Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164
              AE+R+++ L G                           + RE  R +LR G + D+E
Sbjct: 130 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 189

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +D+E +D++          G     +NL +LF  + G  R ++ ++ V +    L ++E+
Sbjct: 190 VDVETSDSAPTFLRNFTGHGMEEVGVNLQDLFKNMPGMNRTRRRKVRVPEALRLLQQEEA 249

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVEG 281
            +L+D D V R+++   E+ GI+F+DE DKI +R+ G   +G  VSREGVQRD+LP+VEG
Sbjct: 250 AKLVDTDRVTREALVRAESSGIIFIDEIDKIASREGGGKGSGPDVSREGVQRDILPIVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+  D   IL + 
Sbjct: 310 STINTKYGQVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILREP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            ++LI QY  L+ TEG+ L+FT+D+++ +A +A   N    +IGARRL TV+ER+L+++S
Sbjct: 370 RNSLIRQYTALLATEGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F AS++ +K + +DA YVR  +     + D+  +IL
Sbjct: 430 FGASEMGQKALKVDAAYVRERLASIVQDEDLSRYIL 465


>gi|270159288|ref|ZP_06187944.1| heat shock protein HslVU ATPase subunit HslU [Legionella
           longbeachae D-4968]
 gi|269987627|gb|EEZ93882.1| heat shock protein HslVU ATPase subunit HslU [Legionella
           longbeachae D-4968]
          Length = 439

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/441 (51%), Positives = 304/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR +     LR+E+MPKNIL++GPTGVG
Sbjct: 1   MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPALRNEIMPKNILMIGPTGVG 60

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+   RE    +V   
Sbjct: 61  KTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEHL 120

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+             S  R+VFRK+LR+G +++ EI+IEV+ T   I 
Sbjct: 121 AEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGIE 180

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F +V GS R K  +M++ K    L  +E+ +LI+ D +   +
Sbjct: 181 IMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTRA 238

Query: 238 IQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+ VE  GIVF+DE DK+  R ++G+G  VSREGVQRDLLPLVEG++V+TKYG I +DHI
Sbjct: 239 IENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM TE
Sbjct: 299 LFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   ++V +D 
Sbjct: 359 GLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVDK 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  ++G   ++ D+  +IL
Sbjct: 419 AYVDKNLGQLVADEDLARYIL 439


>gi|254448955|ref|ZP_05062410.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium HTCC5015]
 gi|198261492|gb|EDY85782.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium HTCC5015]
          Length = 453

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/453 (49%), Positives = 303/453 (66%), Gaps = 23/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD++IIGQ  AKRAV+IALRNRWRR QLP   R E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVQELDKHIIGQHAAKRAVSIALRNRWRRMQLPEATRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR V+ II+DL D+A+  VRE  +++V  +
Sbjct: 63  KTEIARRLAKLANAPFMKVEATKFTEVGYVGREVDSIIKDLADIAVKQVRELEKEKVWPR 122

Query: 126 ASINAEERILDALVGKT---------------------ATSNTREVFRKKLRDGEISDKE 164
           A   AE+R+LD L+                          + TR+ FRKKLR+G+++DKE
Sbjct: 123 AQDAAEDRVLDILLPPARSTSNGFGFDLSGEESPSEPAQDNETRQKFRKKLREGDLNDKE 182

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I++EVA  S  +     PG   +   +  E       S + KK +M ++     L  +E+
Sbjct: 183 IEVEVAAQSGGMQIMTPPGMEEM--SSQLEDMFSKFSSKQSKKRKMRIEDALKVLTDEEA 240

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            ++I+ D +   +I+  E  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V
Sbjct: 241 GKMINEDDLKVRAIEQAEQNGIVFIDEIDKICQRSDRSGGDVSREGVQRDLLPLIEGSTV 300

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           +TKYG I TDHILFI SGAFH+S+P+DL+PE+QGR P+RV ++ L   DF+ IL + + +
Sbjct: 301 NTKYGMIKTDHILFIGSGAFHLSKPSDLIPELQGRLPIRVEMEKLTADDFQRILKEPDHS 360

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY  L+ TEG+ L+FTE+ ID +A+VA  +N    +IGARRL TVMER+LE++S+ A
Sbjct: 361 LTKQYMALIGTEGLTLEFTEEGIDRIAEVAWQVNERTENIGARRLHTVMERLLEEVSYEA 420

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SD  +KT+ +DA YV  HIG    + D+  +IL
Sbjct: 421 SDSSDKTLSVDAAYVDSHIGALVEDEDLSRYIL 453


>gi|119505529|ref|ZP_01627601.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119458638|gb|EAW39741.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 436

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/437 (51%), Positives = 311/437 (71%), Gaps = 8/437 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV  LD++IIGQ +AKRAVAIALRNRWRRQQL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHALDQHIIGQSEAKRAVAIALRNRWRRQQLEPDLRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE +IRDLV+ AI ++RE    +VR +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESMIRDLVETAITLLREEALIKVRTR 122

Query: 126 ASINAEERILDALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           A   AEER+LD L+        +NTR++ RKKLR+G+++D+E++IEV +T+S +     P
Sbjct: 123 AKDAAEERLLDLLLPPDRDDNNANTRQLLRKKLREGDLNDREVEIEVKNTASSVDIMAPP 182

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G   +    L  +F+ +  +   K  +  +Q+    L  +E+ +LID D +   ++   E
Sbjct: 183 GMEEM-TQQLQGMFANL--NKGGKPRKAPIQEALKLLEDEEASKLIDPDDLKAQALTAAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GI+F+DE DK+  R    G  VSREGVQRDLLPL+EG SV+TK+G+I TDHILFIASG
Sbjct: 240 QTGIIFIDEIDKVAKRGEMGGADVSREGVQRDLLPLIEGCSVTTKHGTIKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+S+PADL+PE+QGR P+RV L++L   DFR ILT+ ++ L  QY+ L+ TEG+ + F
Sbjct: 300 AFHLSKPADLIPELQGRLPIRVELEALTTEDFRRILTEPKAALTAQYQALLATEGVKIHF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVR 420
           T+  ++ +A++A  +N    +IGARRL T MER+LE+ISFSASD  + E  V ID +YV 
Sbjct: 360 TDSGVERIAEIAWQVNERAENIGARRLATAMERLLEEISFSASDAGVGESEVTIDRDYVD 419

Query: 421 LHIGDFPSETDMYHFIL 437
             +G+  S+ D+  FIL
Sbjct: 420 SQLGELASDEDLSRFIL 436


>gi|329929331|ref|ZP_08283084.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp.
           HGF5]
 gi|328936700|gb|EGG33143.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp.
           HGF5]
          Length = 468

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 306/465 (65%), Gaps = 34/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTEDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124

Query: 126 ASINAEERILDALVGKTATS---------------------------------NTREVFR 152
           A   A ERI+  L   T                                      R   R
Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L  G++ D+ I+I+V D + ++ +     G     +N+ E+F  +M   R K+ ++SV
Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMGMNMQEMFGNLM-PKRTKRRKLSV 243

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGVQ
Sbjct: 244 KEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGVQ 303

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+  
Sbjct: 304 RDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSLD 363

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T+
Sbjct: 364 DFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHTI 423

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    +VI  +YVR  +     + D+  +IL
Sbjct: 424 LEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468


>gi|261407988|ref|YP_003244229.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           Y412MC10]
 gi|261284451|gb|ACX66422.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           Y412MC10]
          Length = 468

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 306/465 (65%), Gaps = 34/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124

Query: 126 ASINAEERILDALVGKTATS---------------------------------NTREVFR 152
           A   A ERI+  L   T                                      R   R
Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L  G++ D+ I+I+V D + ++ +     G     +N+ E+F  +M   R K+ ++SV
Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMGMNMQEMFGNLM-PKRTKRRKLSV 243

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGVQ
Sbjct: 244 KEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGVQ 303

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+  
Sbjct: 304 RDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSLD 363

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T+
Sbjct: 364 DFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHTI 423

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    +VI  +YVR  +     + D+  +IL
Sbjct: 424 LEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468


>gi|332995304|gb|AEF05359.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas sp.
           SN2]
          Length = 442

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/442 (51%), Positives = 302/442 (68%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+   +V+ +
Sbjct: 63  KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKETEMKKVKFR 122

Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+     +           TR+ FRKKLR G++ DKEI+I+VA     
Sbjct: 123 AEEAAEERILDVLIPPPEDAWGKKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F   +   +KKK ++ ++     L+ +E+ RL++ + +  
Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQN-LSGSQKKKKKLKIKDALKMLVEEEAARLVNQEDLKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I+ VE +GIVF+DE DKI  R+      VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 241 KAIESVEQHGIVFVDEIDKICKREGNTSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +S+P+DL+PE+QGR P+RV L +L   DF+ ILT+  ++L  QYK LM T
Sbjct: 301 ILFIASGAFQMSKPSDLIPELQGRLPIRVELSALEVGDFKRILTEPNASLTEQYKALMLT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ +DF E  I  +A+ A  +N    +IGARRL TV+ER++EDISF AS+   ++ VID
Sbjct: 361 EGVNIDFVESGIQRIAEAAWRVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV  H+       D+  FIL
Sbjct: 421 EDYVNSHLESLVENEDLSRFIL 442


>gi|289165888|ref|YP_003456026.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           longbeachae NSW150]
 gi|288859061|emb|CBJ12990.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           longbeachae NSW150]
          Length = 440

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/441 (51%), Positives = 304/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR +     LR+E+MPKNIL++GPTGVG
Sbjct: 2   MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPALRNEIMPKNILMIGPTGVG 61

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+   RE    +V   
Sbjct: 62  KTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEHL 121

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+             S  R+VFRK+LR+G +++ EI+IEV+ T   I 
Sbjct: 122 AEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGIE 181

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F +V GS R K  +M++ K    L  +E+ +LI+ D +   +
Sbjct: 182 IMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTRA 239

Query: 238 IQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+ VE  GIVF+DE DK+  R ++G+G  VSREGVQRDLLPLVEG++V+TKYG I +DHI
Sbjct: 240 IENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDHI 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM TE
Sbjct: 300 LFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMATE 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   ++V +D 
Sbjct: 360 GLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVDK 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  ++G   ++ D+  +IL
Sbjct: 420 AYVDKNLGQLVADEDLARYIL 440


>gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas
           arsenicoxydans]
 gi|133740026|emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas
           arsenicoxydans]
          Length = 445

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/447 (49%), Positives = 312/447 (69%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD++++GQ +AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARA 120

Query: 127 SINAEERILDALVG----------------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+R++D LV                  +  + TR+ FRK+LR+G + D EI+IE+A
Sbjct: 121 EDAAEDRVIDILVPPARDFGFHPSATSTSDHSNDNATRQTFRKRLREGLLDDNEIEIELA 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           +    +     PG   +    +  +FS   G  RKK  ++ +++    L+ +E+ +L++ 
Sbjct: 181 EAGPTMEIMAPPGMEEM-TEQIKSMFSGA-GGNRKKARKIKIREAMKLLIEEEAGKLVNE 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D + + +I  VE  GIVFLDE DKI  R    G  VSR GVQRDLLPLVEG++V+TKYG 
Sbjct: 239 DELKQKAITNVEQNGIVFLDEIDKIANRSEQGGAEVSRAGVQRDLLPLVEGTTVNTKYGM 298

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L  QY+
Sbjct: 299 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTKQYQ 358

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ ++F +D I  +A++A ++N    +IGARRL TVME++LE+ISFSAS+  ++
Sbjct: 359 ALLATEGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASENPDQ 418

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ IDA YV   +G    + D+  ++L
Sbjct: 419 TLPIDAAYVNERLGALSVDEDLSRYVL 445


>gi|315648141|ref|ZP_07901242.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex
           V453]
 gi|315276787|gb|EFU40130.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex
           V453]
          Length = 468

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/465 (43%), Positives = 305/465 (65%), Gaps = 34/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IVSELD+YI+GQ++AK++VA+ALRNR+RR  L  D RDE++PKNIL++GPTGVG
Sbjct: 5   SMTPRQIVSELDKYIVGQKEAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++
Sbjct: 65  KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDK 124

Query: 126 ASINAEERILDALVGKTATS---------------------------------NTREVFR 152
           A   A ERI++ L   T                                      R   R
Sbjct: 125 AEELANERIVELLAPSTKGQKSQRNPFEMLFGGNNNDTQAEEEDSADKDVSLKEKRRQVR 184

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L  G++ D  ++I+V D + ++ +     G     +N+ E+F  +M   R K+ ++SV
Sbjct: 185 FNLLSGKLEDDTVEIDVEDAAPNMFDMFAGQGNDQMGMNMQEMFGNLM-PKRTKRRKLSV 243

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E+ +LIDMD V ++SI+  E  GI+F+DE DK+ ++   +G  VSREGVQ
Sbjct: 244 KEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGVQ 303

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL   
Sbjct: 304 RDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELSSLTLD 363

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ ++ L  QY  L++TE + ++F+ ++I  +A +A ++N    +IGARRL T+
Sbjct: 364 DFVSILTEPKNALTKQYVNLLRTEDLEVEFSPEAIREIAQIAASVNQNTENIGARRLHTI 423

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    +VI  EYVR  +     + D+  +IL
Sbjct: 424 LEKLLEDLSFEAPELTLDRMVITPEYVREKLAGIAQDRDLSQYIL 468


>gi|332524479|ref|ZP_08400688.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax
           benzoatilyticus JA2]
 gi|332107797|gb|EGJ09021.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax
           benzoatilyticus JA2]
          Length = 439

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/441 (50%), Positives = 309/441 (70%), Gaps = 8/441 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T + +P+EIVSELDR+I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPT
Sbjct: 1   MTHSMTPQEIVSELDRHIVGQNAAKRAVAIALRNRWRRQQVDEKLRGEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APF+KVE TKFTE+GYVG++V+ I+RDLV+VA+   RE      
Sbjct: 61  GVGKTEIARRLAKLADAPFVKVEATKFTEVGYVGKDVDTIVRDLVEVAVKQERERAIRRQ 120

Query: 123 REQASINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           R +A   AEER+LDALV        ++ +  R+V RK+LR+G ++DKEI+IEVAD    +
Sbjct: 121 RAKAEDAAEERVLDALVPPPRDLRESSDNTARQVMRKRLREGTLADKEIEIEVADPKPSL 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LFS+ MG G++   ++ + +   +L  +E+ +L++ + +   
Sbjct: 181 -EILGPQGMEEMAEQLKGLFSQ-MGQGKRNVRKLKIAEALEKLTEEEAGKLVNEEEIRAA 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++   E  GIVF+DE DK+ AR    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHI
Sbjct: 239 ALANAEGNGIVFIDEIDKVAARAEHGGADVSRQGVQRDLLPLVEGTAVSTKYGIVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TE
Sbjct: 299 LFIASGAFHLAKPSDLIPELQGRFPIRVELGSLSVDDFEAILTSTHASLVKQYQALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L+   +++  +A +A ++N    +IGARRL TVMER+L+DISF A +   +TV +DA
Sbjct: 359 GVTLELAPEAVRRIAQIAYDVNERTENIGARRLATVMERLLDDISFDAPNRGGQTVTVDA 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
             V   +G+   + D+  +IL
Sbjct: 419 AEVDRRLGELSRDEDLSRYIL 439


>gi|326796962|ref|YP_004314782.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas
           mediterranea MMB-1]
 gi|326547726|gb|ADZ92946.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas
           mediterranea MMB-1]
          Length = 441

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/441 (51%), Positives = 315/441 (71%), Gaps = 11/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V+ LD++IIGQQ AKRAVAIALRNRWRR QLP D+R E+ PKNIL++GPTGVG
Sbjct: 3   KMTPRETVNALDQHIIGQQSAKRAVAIALRNRWRRMQLPEDMRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE     +R +
Sbjct: 63  KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETTRMRHK 122

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AE+RILDAL+             SNTR++FRKKLR+G++ DKEIDI+V++T   + 
Sbjct: 123 AEDAAEDRILDALLPPARGGDPELNNESNTRQIFRKKLREGQLDDKEIDIDVSETPVGVE 182

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +FS  MG+ RKK+ ++ V+    ++  +E+ +L++ D +   +
Sbjct: 183 IMAPPGMEEM-TSQLQNMFSS-MGNDRKKRRKLKVKDALRQVRDEEAAKLVNEDELKARA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVFLDE DK+      +   VSREGVQRDLLPLVEG +V+TKYG I TDHIL
Sbjct: 241 VEAVEQNGIVFLDEIDKVAKSGERSSGEVSREGVQRDLLPLVEGCTVNTKYGMIKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+++P+DL+PE+QGR P+RV L +L   DF+ IL +  ++L  QY  L KTE 
Sbjct: 301 FIASGAFHLTKPSDLIPELQGRLPIRVELDALTVEDFKRILVEPSASLTKQYVALAKTEN 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDA 416
           I ++FT++ I  +A++A  +N TV +IGARRL TV+ER+LE++S+SASD+  ++ V I A
Sbjct: 361 IDINFTDEGITRIAEIACQVNETVENIGARRLHTVLERLLEEVSYSASDMPDDQQVNITA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           EYV   +G+   + D+  +IL
Sbjct: 421 EYVDEQLGEVVKDEDLSQYIL 441


>gi|310641539|ref|YP_003946297.1| ATP-dependent hsl protease ATP-binding subunit hslu [Paenibacillus
           polymyxa SC2]
 gi|309246489|gb|ADO56056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus
           polymyxa SC2]
          Length = 466

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/465 (44%), Positives = 314/465 (67%), Gaps = 32/465 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTG
Sbjct: 3   NQSLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+  R + V+
Sbjct: 63  VGKTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKSERTENVK 122

Query: 124 EQASINAEERILDALVGKTATS-------------------------------NTREVFR 152
           ++A   A ERI++ LV    ++                                 R   +
Sbjct: 123 DKAEDMANERIVNILVPAEKSNKSQRNPFEMLFGNNTGTSVEEEPPQQDGTLAEKRRKAK 182

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L  G++ D  I+I+V DT+ ++ +     G     +N+ E+F   +   R KK ++ +
Sbjct: 183 FDLLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMGMNMQEMFGSFL-PKRTKKRKLPI 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L++DE+ +LIDMD V ++S++  E  GI+F+DE DKI ++  G+G  VSREGVQ
Sbjct: 242 KEARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQ 301

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL   
Sbjct: 302 RDILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLD 361

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           +F  ILT+ ++ L  QY EL++TE I ++F+ ++I  +A +A ++N    +IGARRL T+
Sbjct: 362 EFVSILTEPKNALTKQYTELLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTI 421

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A +L    ++I  EYVR  +GD     D+  +IL
Sbjct: 422 LEKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466


>gi|57239496|ref|YP_180632.1| ATP-dependent protease ATP-binding subunit HslU [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579476|ref|YP_197688.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58617530|ref|YP_196729.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|57161575|emb|CAH58503.1| ATP-dependent hsl protease ATP-binding subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417142|emb|CAI28255.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia
           ruminantium str. Gardel]
 gi|58418102|emb|CAI27306.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 488

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/435 (53%), Positives = 333/435 (76%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++I  ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR++++PKNIL++G TGVG
Sbjct: 55  ELTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREDIIPKNILMIGHTGVG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E  R  V+++
Sbjct: 115 KTEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKERFRKAVQKK 174

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   +E  ILDAL+G  A+  T+ +F++KL++GE  + EI I + ++ S I   D+P   
Sbjct: 175 AKDLSENIILDALIGSDASQETKTIFQEKLKNGEFENSEISISIKESKSPIPPIDVPNIP 234

Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G+ VG++N+SE+  K++G+ ++ K ++++V++    L+ +ES++LID D + ++++Q+  
Sbjct: 235 GSQVGVMNISEIVHKMLGNNKQLKTVKVTVKEARELLINEESEKLIDEDKIVKEALQLAS 294

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASG
Sbjct: 295 NDGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASG 353

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +DF
Sbjct: 354 AFHLAKPSDLLPELQGRLPIRVELKPLSKDDLIRILTEPESSLLKQYCALMKTENITIDF 413

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ +  +AD+A  +N  V +IGARRL T++E+++EDIS++A++   KT VID+EYV+  
Sbjct: 414 TDEGVSTIADIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVKKK 473

Query: 423 IGDFPSETDMYHFIL 437
           + +   + D+  FIL
Sbjct: 474 LENISKQLDLSKFIL 488


>gi|332976816|gb|EGK13644.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desmospora sp.
           8437]
          Length = 474

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/467 (45%), Positives = 306/467 (65%), Gaps = 32/467 (6%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K +  ++PREIV+ELD+YI+GQ +AKRAVA+ALRNR+RR  LP DL+DE++PKNIL++GP
Sbjct: 9   KQSKQWTPREIVAELDKYIVGQNEAKRAVAVALRNRYRRTLLPEDLKDEVVPKNILMIGP 68

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+  + +E
Sbjct: 69  TGVGKTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAEKLEE 128

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKL-----------RDGEISDKEIDIE-- 168
           V+E+A   A+ERI+  LV     +N  +   + L           R+ E  ++E++ +  
Sbjct: 129 VKEKAEELADERIISLLVPSGKGNNQFKNPLEMLFNSGKGERNTDREEENRNQELEQKRR 188

Query: 169 ------------------VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
                               +    + +           +N+ E+  + M   + KK R+
Sbjct: 189 QLRFQLKSGSLEDEVIEIEVEDQLPMMDMFAGSSVEQMGINMQEMLGQFM-PKKTKKRRL 247

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +++    L+++E  +LIDMD V +DS+  VE  GI+F+DE DKI  +D   G  VSREG
Sbjct: 248 PIREARKVLIQEEGQKLIDMDQVQQDSLNRVEQTGIIFIDEVDKIAGKDRQGGPDVSREG 307

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+D++PE+QGRFP+RV L  L 
Sbjct: 308 VQRDILPIVEGSTVITKYGPVKTDHILFIAAGAFHTAKPSDMIPELQGRFPIRVELADLT 367

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ +  L+ QY  L++TEGI + FTED+I  +A +A ++N    +IGARRL 
Sbjct: 368 AEDFVRILTEPKGALLKQYTALLETEGIQVTFTEDAIREIAKLAADVNRGTENIGARRLH 427

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LE++SF A D+  + V +  EYV+  +GD     D+  +IL
Sbjct: 428 TILERLLEELSFEAPDITLEEVQVTPEYVQQRLGDIAGNRDLSQYIL 474


>gi|170693982|ref|ZP_02885138.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           graminis C4D1M]
 gi|170141054|gb|EDT09226.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           graminis C4D1M]
          Length = 448

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/447 (47%), Positives = 308/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDDPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                       TR+ FRK+LR+G + DKEI+++V 
Sbjct: 124 EDQAEDRILDILLPSARPVGFGSSSSTIDTADEGGTTRQTFRKRLREGLLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|88705213|ref|ZP_01102924.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter
           litoralis KT71]
 gi|88700303|gb|EAQ97411.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter
           litoralis KT71]
          Length = 442

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 306/443 (69%), Gaps = 14/443 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEETLRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++A+ ++RE   +++R +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMAVKMLREQAMEKMRFR 122

Query: 126 ASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILD L+     +          TR++ RKKLR+G++ +KEID+E++  S+  
Sbjct: 123 AEEAAEERILDILLPGARDAKGDAASQGDGTRQLLRKKLREGDLDEKEIDLEISTPSN-- 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  M   + K  RM ++  +  L  +E+ +L++ D + + 
Sbjct: 181 VEISAPPGMEEMTNQLQSMFSN-MSRSQPKSRRMPIKAAFAALCDEEAAKLVNEDEIKQQ 239

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++Q  E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG +VSTKYG + TDHI
Sbjct: 240 AVQAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTDHI 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L +L+  DFR IL + ++ L  QY  L+ TE
Sbjct: 300 LFIASGAFHLSKPSDLIPELQGRLPIRVELAALSPEDFRRILVEPDAALTRQYSALLGTE 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVI 414
           G+ L+FTED I+ +A++A  LN +  +IGARRL TVMER+LED SF A+D  L    + +
Sbjct: 360 GMSLEFTEDGIERIAELAWQLNESTENIGARRLHTVMERLLEDASFKAADDGLSGSVLAV 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   + D   + D+  FIL
Sbjct: 420 DAAYVDAQLSDLAMDEDLSKFIL 442


>gi|116626379|ref|YP_828535.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229541|gb|ABJ88250.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 452

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/440 (49%), Positives = 319/440 (72%), Gaps = 7/440 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +PREIV ELD++++GQ +AKRAVAIALRNR RRQ+L  ++ +E+MPKNIL++GPT
Sbjct: 15  LLDELTPREIVRELDKHVVGQAEAKRAVAIALRNRIRRQKLAPEMAEEVMPKNILMIGPT 74

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RRLARLA +PF+KVE +KFTE+GYVGR+VE +IRDLVD++I++VRE R DEV
Sbjct: 75  GVGKTELARRLARLANSPFLKVEASKFTEVGYVGRDVESMIRDLVDISIDMVREERLDEV 134

Query: 123 REQASINAEERILDALVGKTAT-----SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
            ++A +NAEER+LD L+            TRE  R++LR+G++ ++ ++++V D      
Sbjct: 135 ADRAEVNAEERLLDLLMPPQPEASESLERTREKLRERLREGKLDERLVELDVKDRPPTF- 193

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G     +NL ++   +    + ++ +M V +    L+++E  +LIDMD V R +
Sbjct: 194 EITTNAGIEEMGINLKDMLPNLF-GQKSRRRKMRVAEALDYLVQEEEQKLIDMDQVTRAA 252

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE+ GI+FLDE DKI  R+SG+G  VSREGVQRD+LP+VEG++V+T+YG + TDHIL
Sbjct: 253 LERVESSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTTVNTRYGFVRTDHIL 312

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL+  DF  IL + ++ L  QY  L++TEG
Sbjct: 313 FIAAGAFHVSKPSDLIPELQGRFPIRVELKSLSVEDFIRILKEPKNALAKQYVALLETEG 372

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L   +D+++ +A  A  +N +  +IGARRL T+ME++LE++SF+  DL++KTV +DA 
Sbjct: 373 IKLILADDALEEVAKFAAQVNESSENIGARRLHTIMEKLLEEVSFAGPDLKKKTVKVDAN 432

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YVR  + D   + D+  +IL
Sbjct: 433 YVRKQLADIVKDQDLSRYIL 452


>gi|114776988|ref|ZP_01452008.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552509|gb|EAU54969.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 442

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/444 (52%), Positives = 312/444 (70%), Gaps = 15/444 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREI+SELDRYI+GQ DAKRAVAIALRNRWRRQQ+P+ +R+E+ PKNILL+GPTGVGK
Sbjct: 1   MTPREIISELDRYIVGQHDAKRAVAIALRNRWRRQQVPSPMREEITPKNILLIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I IVRE     V+  A
Sbjct: 61  TEIARRLARLANAPFIKVEATKFTEVGYVGRDVETIVRDLVDTSIKIVREEHLTRVQIPA 120

Query: 127 SINAEERILDALVGKT-------------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
              AEER+LD L+  +               +++RE  R KLR GE+ +++++IEV  T 
Sbjct: 121 EKMAEERLLDILIPHSVNPNGPAVASSPAGNNDSREKMRHKLRLGELDNRQVEIEVEQTP 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           S       P     G ++L E+   +M   + K  RMSV      + + E+DRL+D D +
Sbjct: 181 SMPMMQVFPNQGGDGGMDLQEMLGGMM-GKQSKPKRMSVADAMKIIQQQEADRLLDEDAI 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++I   EN GIVFLDE DKI  R  G G  VSREGVQRDLLPLVEG++++T+YG I T
Sbjct: 240 RDEAINRAENDGIVFLDEMDKITHR-GGTGGDVSREGVQRDLLPLVEGTTINTRYGHIKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DH+LFIASGAFH+++P+DL+PE+QGRFP+RV+L +L +S+FR IL + ES+L  QY  L+
Sbjct: 299 DHVLFIASGAFHLAKPSDLIPELQGRFPIRVNLNALGESEFRRILVEPESSLTRQYAALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + E + + FT++ I  LA +AV +N    +IGARRL T++ERVLEDISF ASD   +++ 
Sbjct: 359 QAENVSISFTDEGIAELARIAVLVNEKTENIGARRLHTLLERVLEDISFEASDRGGESIE 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA YV   +G+  ++ D+  +IL
Sbjct: 419 VDAAYVLAQLGEISADEDLSRYIL 442


>gi|225025700|ref|ZP_03714892.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC
           23834]
 gi|224941481|gb|EEG22690.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC
           23834]
          Length = 445

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 216/447 (48%), Positives = 302/447 (67%), Gaps = 17/447 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P+EIV ELD++IIGQQ AK+AVA+ALRNR+RR Q+   L+ E++PKNIL++GPTG
Sbjct: 3   TSVMTPQEIVHELDKHIIGQQQAKKAVAVALRNRYRRSQVAEPLQSEIVPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+  +RE    + R
Sbjct: 63  VGKTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLMEIALKNLREQAVRKNR 122

Query: 124 EQASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
           ++A   AE R+LDAL+                  S+TR+ FR+ LR GE+ DKEI+IE++
Sbjct: 123 DRAQDAAENRVLDALLPPPPQTGFEGEPAEPQPESHTRKKFREMLRRGELDDKEINIELS 182

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             S        P G       L ++F+  +  GR K  ++ V      L+ +E+ +LI+ 
Sbjct: 183 QASPASMQVMGPPGMEEFSSQLQDMFAN-LSKGRTKPHKIKVAAAMKLLLDEEAAKLINE 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +   ++  VE +GIVFLDE DKI A  + +G  VSR+GVQRDLLPLVEG++V TKYG 
Sbjct: 242 EELREQAVHAVEQHGIVFLDEIDKIAADSNRHGGDVSRQGVQRDLLPLVEGTTVQTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL   DF+ ILT T+++L  QY+
Sbjct: 302 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELSSLTVEDFQAILTSTDASLTKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ T+G+ LDF  D I  LA++A  +N    +IGARRL TV+E++LED+SF A     +
Sbjct: 362 ALLATDGVELDFAPDGITRLAEIAFQVNEKTENIGARRLHTVLEKLLEDVSFHAPQGITQ 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
              I A YV   + +   + D+  ++L
Sbjct: 422 ---ITAAYVDERLAEVAEQEDLARYVL 445


>gi|289207301|ref|YP_003459367.1| heat shock protein HslVU, ATPase HslU [Thioalkalivibrio sp. K90mix]
 gi|288942932|gb|ADC70631.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp.
           K90mix]
          Length = 444

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/446 (48%), Positives = 304/446 (68%), Gaps = 16/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV ELDRYIIGQ +AKR+VA+ALRNRWRR+QLP +L+ E+ PKNIL++GPTGV
Sbjct: 2   TDMTPREIVQELDRYIIGQDEAKRSVAVALRNRWRRRQLPPELQPEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL + A+  +R+    E R 
Sbjct: 62  GKTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLAEAAVKQLRDEAIKENRV 121

Query: 125 QASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AEERILDAL+ +             + S TR+  RK+LR+G++ ++EIDIEV   
Sbjct: 122 KAEDAAEERILDALLPRPRNAGFTESAQDDSNSETRQKLRKRLREGDLDEREIDIEVQQN 181

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +     PG   +    L  +F   +G  + +  R+ + +    L+ +E+ RLI+ + 
Sbjct: 182 PHGVEIMTPPGMEEMA-SQLQSMFQN-LGGQKTRSRRLQIAEARKLLIEEEAARLINDEE 239

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +I+ VE  GIVFLDE DK+    D G+   VSREGVQRDLLPL+EG++VSTK G +
Sbjct: 240 LKERAIERVEQSGIVFLDEIDKVAKGSDKGSSGEVSREGVQRDLLPLIEGTTVSTKLGMV 299

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+   F  ILT+  ++L  QY E
Sbjct: 300 RTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELDALSADAFVRILTEPTASLTEQYVE 359

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LMKTEG+ L F ED +  LA++A ++N+   +IGARRL TV+ER+L+D+++ A D+    
Sbjct: 360 LMKTEGVELRFEEDGVRRLAEIAFDVNARTENIGARRLHTVLERLLQDVAYRAPDVDGA- 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V++D  +V   + D     D+  +IL
Sbjct: 419 VIVDRAFVDERLADLVENEDLSRYIL 444


>gi|187922349|ref|YP_001893991.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           phytofirmans PsJN]
 gi|238689476|sp|B2T1N8|HSLU_BURPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|187713543|gb|ACD14767.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           phytofirmans PsJN]
          Length = 448

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/447 (47%), Positives = 310/447 (69%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEDPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                    +S TR+ FRK+LR+G + DKEI+++V 
Sbjct: 124 EDQAEDRILDILLPSARPVGFGASSSAADTVDESSTTRQTFRKRLREGLLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + ++ V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKLKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|134297266|ref|YP_001121001.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           vietnamiensis G4]
 gi|166221471|sp|A4JIR3|HSLU_BURVG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134140423|gb|ABO56166.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           vietnamiensis G4]
          Length = 447

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/446 (48%), Positives = 317/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQSKAKKAVAVALRNRWRRQQVTEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +Q+    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIQEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + LDF  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLDFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAQYVDRALGEVSQDEDLSRYVL 447


>gi|254455698|ref|ZP_05069127.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082700|gb|EDZ60126.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 457

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/431 (54%), Positives = 336/431 (77%), Gaps = 3/431 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREIVSELDR+++GQ  AK+AVA+ALRNRWRRQ L  ++++E++PKNIL++GPTGVGKT 
Sbjct: 28  PREIVSELDRFVVGQNKAKKAVAVALRNRWRRQALTGEMKNEVLPKNILMIGPTGVGKTE 87

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ISRRL++LA APF+KVE T+FTE+GYVGR+VEQI+RDL+++AI++ +   R  V  QA  
Sbjct: 88  ISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIVRDLIEIAISMEKVKMRKGVHAQAQK 147

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GAS 186
            AEE++LDALVGK A+  TRE FRK+LR+G++ D EI+I V+DT S  ++F+IPG  GA+
Sbjct: 148 AAEEKVLDALVGKKASLATRESFRKRLRNGDLDDNEIEIAVSDTGSGNTSFEIPGMPGAN 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           VG++N+ E+  K M   ++KK +M+V++ +  L+ DESD+LI+ D + + +    EN GI
Sbjct: 208 VGMINIGEMIGKSM-GNKEKKKKMTVKESHEILINDESDKLIEQDKIVKAAKLSTENNGI 266

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DKI AR    G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF +
Sbjct: 267 VFLDEVDKISARTDRVGGDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAFQL 326

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DLLPE+QGR P+RV L++L   DF+ IL + + +LI QY  L+KTE + L+F++D 
Sbjct: 327 AKPSDLLPELQGRLPIRVELEALTSEDFKRILREPDFSLIKQYVALLKTENVELEFSDDG 386

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDA+A++A  +N+TV +IGARRL T++E++L++ISF+A+D   + ++I+ EY+  ++ + 
Sbjct: 387 IDAIANIASEVNTTVENIGARRLHTIIEKILDEISFTATDRSGEKIIINKEYIDKNLDNL 446

Query: 427 PSETDMYHFIL 437
             +TD+  FIL
Sbjct: 447 IKDTDLSKFIL 457


>gi|332528828|ref|ZP_08404802.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella
           gracilis ATCC 19624]
 gi|332041687|gb|EGI78039.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella
           gracilis ATCC 19624]
          Length = 453

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/453 (51%), Positives = 313/453 (69%), Gaps = 23/453 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG
Sbjct: 3   SMTPQEIVSELDRHIVGQKDAKRAVAIALRNRWRRQQVEAALRPEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL+DVA+   RE+   +VR +
Sbjct: 63  KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLMDVAVKQTREAAMKKVRTR 122

Query: 126 ASINAEERILDALVGKT--------------------ATSNTREVFRKKLRDGEISDKEI 165
           A   AEERILDAL+                       A + TR++FRKKLR+G++ ++E+
Sbjct: 123 AEDAAEERILDALLPPPRDVSRESLAEDLERGRSVGMADNGTRQIFRKKLREGQLDEREV 182

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +IEV +    +     P G       L  LF + MG+G++K  +M + +    L+ +E+ 
Sbjct: 183 EIEVNEPKPQLEIM-GPAGMEEMTEQLRGLFGQ-MGAGKRKLRKMRIVEAMKLLLDEEAA 240

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSV 284
           +L++ D +   ++   E  GIVF+DE DK+ +R  G G   VSR+GVQRDLLPLVEG+SV
Sbjct: 241 KLVNEDEIRVQALSNAEQNGIVFIDEIDKVTSRSEGQGTAEVSRQGVQRDLLPLVEGTSV 300

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           STKYG I TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L SL+  DF  ILT T ++
Sbjct: 301 STKYGVIKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELASLSVEDFEAILTQTHAS 360

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+ L+ TEG+ L+F  D I  LA +A  +N    +IGARRL TVMER+L+D+SF A
Sbjct: 361 LTRQYQALLATEGVTLEFAPDGITRLAHIAYEVNERTENIGARRLATVMERLLDDVSFDA 420

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + L  +TV IDA YV   +     + D+ H+IL
Sbjct: 421 AKLSGQTVRIDAAYVDQRLAALSKDEDLSHYIL 453


>gi|62286859|sp|Q7VKB3|HSLU_HAEDU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 440

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGV
Sbjct: 1   MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E   ++ R 
Sbjct: 61  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 120

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR++FRKKLR+G + DKEIDI+VA   +
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQVN 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + +K +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TKYG + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF A++   + +VI
Sbjct: 358 TEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHIVI 417

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 418 DEKYVATALNDVVENEDLSRFIL 440


>gi|312958527|ref|ZP_07773047.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens WH6]
 gi|311287070|gb|EFQ65631.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas
           fluorescens WH6]
          Length = 445

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/448 (51%), Positives = 318/448 (70%), Gaps = 18/448 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE    +V  
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVTKVSH 120

Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AEERILDAL+             ++ SNTR++FRK+LR+G++ DKEI+IEVA+ S
Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPSSDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               +   P G       L  LF+  MG G+KK  ++ V++    +  +E+ RL++ + +
Sbjct: 181 G--VDISAPPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409
           KTEG+ ++F  D I  LA++A  +N    +IGARRL T++ER+LE++SFSA D+      
Sbjct: 358 KTEGLGIEFQADGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDMAGAQNG 417

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + IDA+YV  H+G+     D+  +IL
Sbjct: 418 EAIKIDADYVNSHLGELAQNEDLSRYIL 445


>gi|302343315|ref|YP_003807844.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus
           baarsii DSM 2075]
 gi|301639928|gb|ADK85250.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus
           baarsii DSM 2075]
          Length = 457

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/456 (49%), Positives = 316/456 (69%), Gaps = 25/456 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD+Y+IGQ  AKR+VAIALRNRWRR+Q+P +LRDE+ PKNIL++GPTGVG
Sbjct: 3   QLTPRQIVAELDKYVIGQDQAKRSVAIALRNRWRRRQVPEELRDEIAPKNILMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF KVE +KFTE+GY+GR+VE +IRDLV++A+N+V+ + R+ VRE+
Sbjct: 63  KTEIARRLAKMADAPFFKVEASKFTEVGYMGRDVESMIRDLVELAVNMVKNAERERVREK 122

Query: 126 ASINAEERILDALVGK---------------------TATSNTREVFRKKLRDGEISDKE 164
           A   AEER+LD L+                       +  + TR   RK LR+G++S++ 
Sbjct: 123 AQELAEERLLDILLPPRQLAHDGKDLDESSHLELVRDSEENPTRAKLRKLLREGKLSERY 182

Query: 165 IDIEV--ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           +D+E+  A  S  +      GG     +NL E+   V    + K+ ++ V +    L   
Sbjct: 183 VDLELDAAKPSGPMVEIFSAGGMEDLEMNLREMLGSVF-PKQPKRRKVKVPEALELLANA 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEG 281
           E+ +LIDMD V  +++  VE  G++FLDE DKI  R+ SG G  VSREGVQRDLLPLVEG
Sbjct: 242 EAAKLIDMDKVVEEALAKVEQEGMIFLDEIDKIATREHSGRGPDVSREGVQRDLLPLVEG 301

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V+TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L   DF  ILT+ 
Sbjct: 302 STVNTKYGMVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELEALTPEDFVRILTEP 361

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           E+ L  QYK LM TEG+ L+F  +SI+A+A +A  +N +  +IGARRL TVME++LE+++
Sbjct: 362 ENALTTQYKALMATEGLELEFLPESIEAIAQIAGRVNQSTENIGARRLHTVMEKLLEEVA 421

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+A D+    + +DA YVR  +     +TD+  +IL
Sbjct: 422 FNAPDMAGVRLSVDAAYVRQRLEAISVDTDLSRYIL 457


>gi|209521635|ref|ZP_03270330.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           H160]
 gi|209497937|gb|EDZ98097.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           H160]
          Length = 448

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/447 (47%), Positives = 307/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G++ DKEI+++V 
Sbjct: 124 GDLAEDRILDILLPTARPVGFGSSSSLADTADEGSTTRQTFRKRLREGQLDDKEIELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   +
Sbjct: 362 ALLATEDVHLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V IDA YV   + +   + D+  ++L
Sbjct: 422 AVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|262277814|ref|ZP_06055607.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium
           HIMB114]
 gi|262224917|gb|EEY75376.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium
           HIMB114]
          Length = 439

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/434 (55%), Positives = 343/434 (79%), Gaps = 5/434 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDR++IGQ +AKRAVAIALRNRWRRQ+LP ++R+E++PKNIL++GPTGVG
Sbjct: 9   SFSPREIVSELDRFVIGQSEAKRAVAIALRNRWRRQELPEEIREEVLPKNILMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRL++LA APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV  +
Sbjct: 69  KTEISRRLSKLAEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKERKRKEVLTK 128

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG- 184
           A ++AEER+L+ LVGK A+  T+E +RK+LR G++ + EI+I V D S  + +FDIPG  
Sbjct: 129 AQMSAEERVLEVLVGKNASGATKESYRKRLRAGDLDNNEIEISVQD-SPQMPSFDIPGMQ 187

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            SVG++++ ++F K  G  +KKK +M+V++ Y  L+ +ESD+L+D D V +++    EN 
Sbjct: 188 GSVGMVSIGDIFGK--GMTKKKKKKMTVKESYDYLIEEESDKLMDNDQVLKEAKFAAENN 245

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVFLDE DK+ AR  G +G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGA
Sbjct: 246 GIVFLDEIDKVSARSDGRSGADVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGA 305

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           F +++P+DLLPE+QGR P+RV L +L K DF  IL + +++LI QY  L+ TE + L+FT
Sbjct: 306 FQLAKPSDLLPELQGRLPIRVELNALTKEDFIKILKEPDNSLIKQYTALLGTEKVTLEFT 365

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+I+A+A+++ ++NST+ +IGARRL T++E++L+DISF A D   + V+I+  YV  H+
Sbjct: 366 DDAIEAIAEISTHINSTIENIGARRLHTILEKILDDISFDAPDKSGEKVLINKAYVDKHL 425

Query: 424 GDFPSETDMYHFIL 437
           GD   + D+  FIL
Sbjct: 426 GDIAKDKDLSKFIL 439


>gi|52840878|ref|YP_094677.1| ATP-dependent protease ATP-binding subunit HslU [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148360705|ref|YP_001251912.1| ATP dependent Hsl protease ATP binding subunit [Legionella
           pneumophila str. Corby]
 gi|52627989|gb|AAU26730.1| ATP dependent Hsl protease, ATP binding subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148282478|gb|ABQ56566.1| ATP dependent Hsl protease, ATP binding subunit [Legionella
           pneumophila str. Corby]
          Length = 447

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/444 (52%), Positives = 303/444 (68%), Gaps = 12/444 (2%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPT 62
               +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++    LR+E+MPKNIL++GPT
Sbjct: 6   NMVMTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPVLRNEIMPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V
Sbjct: 66  GVGKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKV 125

Query: 123 REQASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
              A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T  
Sbjct: 126 EHLAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPV 185

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            I     PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + + 
Sbjct: 186 GIEIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIK 243

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I+ VE  GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG++VSTKYG + +
Sbjct: 244 LKAIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKS 303

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM
Sbjct: 304 DHILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALM 363

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +TEG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV 
Sbjct: 364 ETEGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVH 423

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D  YV  ++G   ++ D+  +IL
Sbjct: 424 VDKAYVDKNLGQLIADEDLARYIL 447


>gi|302035682|ref|YP_003796004.1| heat shock protein hslVU, ATPase subunit [Candidatus Nitrospira
           defluvii]
 gi|300603746|emb|CBK40078.1| Heat shock protein HslVU, ATPase subunit [Candidatus Nitrospira
           defluvii]
          Length = 467

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/455 (49%), Positives = 310/455 (68%), Gaps = 24/455 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV  LDRY+IGQ DAKR VAIALRNRWRRQQL  +LRDE+MPKNI+++GPTGVG
Sbjct: 14  SLTPRQIVEALDRYVIGQHDAKRMVAIALRNRWRRQQLAPELRDEVMPKNIIMIGPTGVG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE IIRDL ++AI++V+    +EV+ +
Sbjct: 74  KTEIARRLAKLAEAPFIKVEASKFTEVGYVGRDVESIIRDLTELAISLVKTKHLEEVQGK 133

Query: 126 ASINAEERILDALVGKTATSNT-----------------------REVFRKKLRDGEISD 162
           AS + EER+LD L+    +  T                       R   R +LR+G++  
Sbjct: 134 ASRHGEERLLDLLLPGAPSRPTSPGFEPSGARTDASEQIESADATRSKLRLQLREGKLDQ 193

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +++EV + +  +      GG      NL ++    M  G+KKK  M V      L ++
Sbjct: 194 RSVEVEVKERALPLGVISNAGGMEDLEGNLRDMLGG-MFQGKKKKRMMKVPDALKHLTQE 252

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ +LIDMD V R++I  VE  GIVFLDE DKI  R+   G  VSREGVQRDLLP+VEGS
Sbjct: 253 EAQKLIDMDEVVREAITKVEQTGIVFLDEIDKIAGRERAMGPDVSREGVQRDLLPIVEGS 312

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +VSTK+G++ TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L  L K DF  ILT+  
Sbjct: 313 TVSTKHGAVQTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELAPLTKDDFVRILTEPR 372

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             L+ QY+ LM TEG+ ++F +D +  +A  AV +N    +IGARRL T+MER+LE +SF
Sbjct: 373 GALVRQYQALMATEGLTVEFADDGLAEIAATAVQVNERTENIGARRLFTIMERLLEQVSF 432

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             S+++EKT+V+DA YVR  + +   + D+  +IL
Sbjct: 433 EGSEMKEKTIVVDAGYVRERLQNIVKDQDLSRYIL 467


>gi|296161395|ref|ZP_06844202.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           Ch1-1]
 gi|295888381|gb|EFG68192.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp.
           Ch1-1]
          Length = 448

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/447 (47%), Positives = 308/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G + DKE++++V 
Sbjct: 124 EDQAEDRILDILLPSARPVGFGASSSAADTVDEGSTTRQTFRKRLREGLLDDKEVELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ ++++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAAKMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|117923333|ref|YP_863950.1| ATP-dependent protease ATP-binding subunit HslU [Magnetococcus sp.
           MC-1]
 gi|166221591|sp|A0L3K1|HSLU_MAGSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|117607089|gb|ABK42544.1| heat shock protein HslVU, ATPase subunit HslU [Magnetococcus sp.
           MC-1]
          Length = 461

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/461 (50%), Positives = 314/461 (68%), Gaps = 31/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F+PREIVSELDRYIIGQ  AKRAVAIALRNRWRRQ+L A++R+E+ PKNIL++GPTGVG
Sbjct: 3   EFTPREIVSELDRYIIGQNMAKRAVAIALRNRWRRQRLSAEMREEVYPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++ I +V E  + +V+ Q
Sbjct: 63  KTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVESIVRDLVEMGITMVTEEAKVKVQFQ 122

Query: 126 ASINAEERILDALVGKTAT----------------------------SNTREVFRKKLRD 157
           A   AEER+LD L+   +T                              +R+  RK LR+
Sbjct: 123 AEDQAEERLLDILLPLPSTGQGEGSAHFGLFGQMEGSSVKPEPTAQQKESRQKMRKMLRE 182

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+EIDI++ +    +   ++     +  +NL ++   +M  GR K  R+ V +   
Sbjct: 183 GKLDDREIDIDLKE-QRRVPMMEVITPQGMEGINLQDMLGGLM-GGRTKTRRVKVGEAMK 240

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLL 276
            L  +E+ +L+D DTV + +I+ VE  GIVFLDE DK+ AR     G  VSREGVQRDLL
Sbjct: 241 LLTEEEAGKLVDQDTVQQVAIERVEQSGIVFLDELDKVCARGSETRGGDVSREGVQRDLL 300

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           PLVEG++VSTKYG + +DHILFIASGAF +++P+DLLPE+QGR P+RV L+SL K +F  
Sbjct: 301 PLVEGTTVSTKYGMVKSDHILFIASGAFQLAKPSDLLPELQGRLPIRVELESLGKGEFVR 360

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ E+ L  QY  LM  E I L FT++ I+ALA++A  +N T  +IGARRL TVME++
Sbjct: 361 ILTEPENALTRQYAALMGVENIELVFTDEGIEALAEIATRVNETAENIGARRLHTVMEKL 420

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L+++SFSA D   + VVIDA YV   + D  ++ D+  FIL
Sbjct: 421 LDELSFSAPDRGGERVVIDAAYVNRQLSDLAADEDLSRFIL 461


>gi|295706290|ref|YP_003599365.1| heat shock protein HslVU ATPase subunit HslU [Bacillus megaterium
           DSM 319]
 gi|294803949|gb|ADF41015.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           DSM 319]
          Length = 466

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/467 (42%), Positives = 301/467 (64%), Gaps = 33/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PR+IV +LD+YIIGQ  AK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R++A  NA +RI++ LV       +                               R+  
Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L  GE+ +  + IEV +    + +     G     +N+ +  S  M   ++KK +++
Sbjct: 181 AHQLALGELENHYVTIEVEEQQPSMFDMLQGSGMEQMGMNMQDALSNFM-PKKQKKRKLT 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREG 270
           V+     L  +E+ +LIDMD V ++++   E YGI+F+DE DKI  +   +    VSREG
Sbjct: 240 VKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKIAQKSGNSSSADVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L  L 
Sbjct: 300 VQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELTKLT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL + ++ L+ QY  L++TEGI ++F++D+I  +A++A  +N    +IGARRL 
Sbjct: 360 VEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGARRLH 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+SF A ++  + +VI  +YV   +       D+  FIL
Sbjct: 420 TILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466


>gi|78484749|ref|YP_390674.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363035|gb|ABB41000.1| ATP-dependent hsl protease ATP-binding subunit HslU [Thiomicrospira
           crunogena XCL-2]
          Length = 440

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/441 (50%), Positives = 309/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD YI+GQ +AK++VAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK
Sbjct: 2   MTPKEIVHELDSYIVGQAEAKKSVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVGK 61

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TK+TE+GYVGR V+ II+DLV+ AI + RE     V+ +A
Sbjct: 62  TEIARRLAKLANAPFIKVEATKYTEVGYVGREVDSIIKDLVENAIKMQREQAMKGVKNKA 121

Query: 127 SINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              AEE+ILD L+              S TR+ FRK+LR+GE+ DKEI+I++      + 
Sbjct: 122 QDLAEEKILDILLPPARGREEDSYEHMSETRQKFRKRLREGELDDKEIEIDLNAAPPHVE 181

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L ++F   +  G+K K ++ +++    L  +E+ R+ID + +   +
Sbjct: 182 IMGAPGMEEM-TNQLQDMFQG-LSQGKKNKRKLPIKQAMKLLTEEEAQRIIDQEDLKTKA 239

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+ VE  GIVF+DE DK+  R  G G G VSREGVQRDLLPL+EGS+VSTKYG I TDHI
Sbjct: 240 IENVEQNGIVFIDEIDKVAKRQEGAGGGDVSREGVQRDLLPLIEGSTVSTKYGMIKTDHI 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LF+ASGAFH+++P+DL+PE+QGR P+RV LKSL   DF  ILT+ ++ LI Q  EL+KTE
Sbjct: 300 LFVASGAFHLAKPSDLIPELQGRLPIRVELKSLKVEDFIRILTEPKAALITQAIELLKTE 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++FT + I  LA++A ++N T  +IGARRL TVME +LE++SF+A D  ++TV+ID 
Sbjct: 360 GVKIEFTGEGIKRLAEIAYHVNETTENIGARRLHTVMEHLLEEVSFNAPDFGQETVIIDE 419

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            +V   +G+   + D+  +IL
Sbjct: 420 AFVNDRLGELSQDQDLSQYIL 440


>gi|303248943|ref|ZP_07335190.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           fructosovorans JJ]
 gi|302489666|gb|EFL49602.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           fructosovorans JJ]
          Length = 461

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/463 (49%), Positives = 319/463 (68%), Gaps = 30/463 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+  +LRDE+ PKNI+++GPT
Sbjct: 1   MHASLTPREIVSELDKYIIGQKDAKRMVAIAMRNRWRRQQIEPNLRDEIAPKNIIMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+   D V
Sbjct: 61  GVGKTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRV 120

Query: 123 REQASINAEERILDALVGKT--------------------------ATSNTREVFRKKLR 156
             +A   AEER+LD L+ ++                          A ++TRE  RK  R
Sbjct: 121 AAKAEKAAEERLLDLLLPESQRGGENPIPMPAALEAPAMAATPSEPAGASTREKLRKLWR 180

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ D+ + +EV+  S  +    +PG   +G +   ++FSKV    RKK   M V+  Y
Sbjct: 181 EGKLDDRIVPVEVSVASPQVEIMSMPGMEDMG-MQFKDMFSKVFPQ-RKKTRNMRVRDAY 238

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--DSGNGIGVSREGVQRD 274
             L+++ESDRL+DMD V   + + VE  GI+F+DE DKI  +    G+G  VSREGVQRD
Sbjct: 239 EVLLQEESDRLVDMDKVAEAAKERVEQTGIIFIDELDKICGKQAGGGSGPDVSREGVQRD 298

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEG  V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L   DF
Sbjct: 299 LLPVVEGCVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDF 358

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L +QYK L+ TEG+ LDFT++++  +A+ A  +N    +IGARRL T+ME
Sbjct: 359 YRILTEPKNALTVQYKALIGTEGVTLDFTDEALREVAEFAQRINEETENIGARRLYTIME 418

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++L D+SF+ASD   +TVV+D  YVR  + D     D+  +IL
Sbjct: 419 KILSDLSFAASDQNGQTVVVDPAYVRDKLVDVAENRDLSRYIL 461


>gi|167561103|ref|ZP_02354019.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis EO147]
          Length = 447

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 209/446 (46%), Positives = 315/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DK++++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGAGAEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +G G+K + ++ +++    L  +E+ ++++ + 
Sbjct: 184 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|220904285|ref|YP_002479597.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254802302|sp|B8IZJ2|HSLU_DESDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219868584|gb|ACL48919.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 437

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/435 (46%), Positives = 304/435 (69%), Gaps = 5/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+EL+++++GQ+ AKR VA+A+RNRWRRQ LP+DLRDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVAELNKFVVGQEQAKRMVAVAVRNRWRRQHLPSDLRDEVSPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+     VR+ A
Sbjct: 64  TEIARRLARLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRDEENARVRKAA 123

Query: 127 SINAEERILDAL----VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
              AE R++D L     G+   ++TRE   ++ R G + ++E+++EV +      +    
Sbjct: 124 EAAAESRLMDLLLPNSFGQEERASTREKLLQQFRLGFLDEREVEMEVTEQGGGGVDIFAI 183

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G       + ++FSK     +  + +M ++  +  L+++ES +L+D D + + + + VE
Sbjct: 184 PGMEQMGGQVKDMFSKAFPP-KHSRRKMKIRDAFNVLVQEESGKLVDQDALSQRAKERVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GI+F+DE DKI +        +SREGVQRDLLP+VEGSSV+TKYG I TDHILFIA+G
Sbjct: 243 QTGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSSVNTKYGMIRTDHILFIAAG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH S+P+D++PE+QGRFP+RV L++L + +F  ILT+ ++ L  QY+ L+ TE I L F
Sbjct: 303 AFHFSKPSDMIPELQGRFPLRVELQALGREEFLRILTEPDNALTKQYEALLGTEQIRLSF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T D ++ +A  A ++NS   +IGARRL T+ME++L DISF A D+    +V++ +YV  H
Sbjct: 363 TMDGLEEIAAFAEDINSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNKDYVVEH 422

Query: 423 IGDFPSETDMYHFIL 437
           + D   + D+  +IL
Sbjct: 423 LQDVRGDQDLTQYIL 437


>gi|329900879|ref|ZP_08272628.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549352|gb|EGF33923.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 453

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/448 (50%), Positives = 313/448 (69%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ELD++++GQ +AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 8   MNMTPQEIVTELDKHVVGQANAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 67

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I   RES   +VR+
Sbjct: 68  GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRESEMRKVRD 127

Query: 125 QASINAEERILDALVGKT---------------ATSNTREVFRKKLRDGEISDKEIDIEV 169
           +A   AE+RI+D LV                  A S TR+ FRK+LR+G + D +I+IEV
Sbjct: 128 RAGDAAEDRIIDILVPPARDFGIQPVATDGTPAAGSTTRQTFRKRLREGSLDDHQIEIEV 187

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            D+   +     PG   +    +  +FS V  + RKK  ++ V++    L+ +E+ +L++
Sbjct: 188 NDSGPQMDIMAPPGMEEM-TEQIKTMFSGV-SNNRKKMRKVKVKEALKLLVEEEAGKLLN 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D + + +I  VE  GIVFLDE DKI +R    G  VSR GVQRDLLPLVEG++V+TKYG
Sbjct: 246 EDELKQKAITNVEQNGIVFLDEIDKIASRSETGGAEVSRAGVQRDLLPLVEGTTVNTKYG 305

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF  ILT T++ L  QY
Sbjct: 306 MIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTRQY 365

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+ TE + + F++D I  LA++A ++N    +IGARRL TVME++LED+SF+A++   
Sbjct: 366 QALLSTENMTITFSDDGIRRLAEIAYSVNEKTENIGARRLYTVMEKLLEDMSFNATERSG 425

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +TV I A YV   +G      D+ H++L
Sbjct: 426 ETVNITAPYVDERLGALAVNEDLSHYVL 453


>gi|33152977|ref|NP_874330.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi
           35000HP]
 gi|33149202|gb|AAP96719.1| ATP-dependent hsl protease ATP-binding subunit HslU [Haemophilus
           ducreyi 35000HP]
          Length = 448

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/443 (50%), Positives = 306/443 (69%), Gaps = 13/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL  DLR E+ PKNIL++GPTGV
Sbjct: 9   MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 68

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E   ++ R 
Sbjct: 69  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 128

Query: 125 QASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+                 TR++FRKKLR+G + DKEIDI+VA   +
Sbjct: 129 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQVN 188

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + +K +M ++     ++ +E+ +L++ + + 
Sbjct: 189 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEELK 245

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TKYG + TD
Sbjct: 246 QQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVKTD 305

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF  ILT+  ++L LQY+ELMK
Sbjct: 306 HILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYRELMK 365

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT+D I  +A+ A  +N    +IGARRL TV+ER+++ ISF A++   + +VI
Sbjct: 366 TEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHIVI 425

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D +YV   + D     D+  FIL
Sbjct: 426 DEKYVATALNDVVENEDLSRFIL 448


>gi|307609439|emb|CBW98929.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila 130b]
          Length = 439

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/441 (52%), Positives = 303/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVG 65
            +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++    LR+E+MPKNIL++GPTGVG
Sbjct: 1   MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPVLRNEIMPKNILMIGPTGVG 60

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V   
Sbjct: 61  KTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEHL 120

Query: 126 ASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T   I 
Sbjct: 121 AEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGIE 180

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + +   +
Sbjct: 181 IMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLKA 238

Query: 238 IQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+ VE  GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG++VSTKYG + +DHI
Sbjct: 239 IESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM+TE
Sbjct: 299 LFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMETE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV +D 
Sbjct: 359 GLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVDK 418

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  ++G   ++ D+  +IL
Sbjct: 419 AYVDKNLGQLIADEDLARYIL 439


>gi|209364282|ref|YP_001425418.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082215|gb|ABS78184.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii Dugway 5J108-111]
          Length = 465

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 306/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+G + DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 199 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 255

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV RD   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 256 VDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEGSTVFTK 315

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 316 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTE 375

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 376 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 435

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 436 QGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|258511367|ref|YP_003184801.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478093|gb|ACV58412.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 464

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 208/466 (44%), Positives = 306/466 (65%), Gaps = 31/466 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +PREIV  LDRYI+GQ+ AKRAVAIALRNR+RR +L  +++ E+ PKNIL++G
Sbjct: 1   MPSERELTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRSKLSPEMQAEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+    +
Sbjct: 61  PTGVGKTEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAE 120

Query: 121 EVREQASINAEERILDALVGKTATS-----------------------------NTREVF 151
            V+ +A   A +RI++ALV                                     R   
Sbjct: 121 RVKSEAEARANDRIVEALVPDPGARSRARNPLEMLFSGGFAADRPQEPSSDQVREERRRV 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           ++KL  G + D  ++++V + +  ++   IPG  +  + NL E+   ++     KK +M+
Sbjct: 181 KQKLLMGALEDHYVEVDVEEQAGPMALGFIPGMGAESLGNLQEMLGNLLPKS-TKKRKMT 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L ++E+ +LIDMD V  ++I   EN+GI+F+DE DKI  R   +G  VSREGV
Sbjct: 240 VREARKVLTQEEAQKLIDMDAVTAEAIYRAENHGIIFIDEMDKIAGR-ETHGPDVSREGV 298

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+VSTKYG++ TD++LFI +GAFHV++P+DL+PE+QGRFP+RV L+ L K
Sbjct: 299 QRDILPIVEGSTVSTKYGAVKTDYMLFIGAGAFHVAKPSDLIPELQGRFPIRVELEPLTK 358

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + E++LI QY  L++TEGI ++FT+++I+ +A++A  +N    +IGARRL T
Sbjct: 359 DDFVRILREPENSLIKQYTALLETEGIRVEFTDEAIERIAEMAQKVNEETENIGARRLHT 418

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E+VLED+SF A ++    + I   YV   +GD     D+  FIL
Sbjct: 419 LVEKVLEDLSFEAPEIHLGEIKITRAYVDEKLGDIVQNRDLSQFIL 464


>gi|54293625|ref|YP_126040.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila
           str. Lens]
 gi|54296664|ref|YP_123033.1| ATP-dependent protease ATP-binding subunit HslU [Legionella
           pneumophila str. Paris]
 gi|296106229|ref|YP_003617929.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|62286752|sp|Q5WYQ8|HSLU_LEGPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286755|sp|Q5X7B0|HSLU_LEGPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286761|sp|Q5ZXU0|HSLU_LEGPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|53750449|emb|CAH11843.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila str. Paris]
 gi|53753457|emb|CAH14912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella
           pneumophila str. Lens]
 gi|158512135|gb|ABW69096.1| heat shock protein ATPase subunit [Legionella pneumophila]
 gi|295648130|gb|ADG23977.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 441

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/443 (52%), Positives = 303/443 (68%), Gaps = 12/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63
              +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++    LR+E+MPKNIL++GPTG
Sbjct: 1   MVMTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPVLRNEIMPKNILMIGPTG 60

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI   RE    +V 
Sbjct: 61  VGKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVE 120

Query: 124 EQASINAEERILDALVGK--------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
             A   AEERILD L+             +  R+VFRK+LR+GE++D EI+IEVA T   
Sbjct: 121 HLAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVG 180

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  +F +V GS R K  +M+V K    L  +E+ +LI+ + +  
Sbjct: 181 IEIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKL 238

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            +I+ VE  GIVF+DE DKI  R    +G  VSREGVQRDLLPLVEG++VSTKYG + +D
Sbjct: 239 KAIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSD 298

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFHV++P+DL+ E+QGR P+RV L +L+  DF  ILT+  ++L LQY  LM+
Sbjct: 299 HILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALME 358

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ L F E  I  +A+VA  +N    +IGARRL TVMER+LE +SF A+D   +TV +
Sbjct: 359 TEGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHV 418

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV  ++G   ++ D+  +IL
Sbjct: 419 DKAYVDKNLGQLIADEDLARYIL 441


>gi|329114128|ref|ZP_08242890.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum
           DM001]
 gi|326696204|gb|EGE47883.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum
           DM001]
          Length = 437

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/435 (54%), Positives = 327/435 (75%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+
Sbjct: 65  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERI+DAL G+ ++++T+  FR  LR G++ DKEIDI V + +   S  ++PG  
Sbjct: 125 AQQAAEERIVDALAGEGSSADTKSKFRSMLRTGQLEDKEIDIAVTEQAPAGSG-EMPGAM 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
               +N+ ++    M  G  K+ ++ V      L R+E+DRL+D + + R+++   +  G
Sbjct: 184 PGQAINVGDMMKAFMNRG-PKQKKLKVSVAREYLKREEADRLLDGEALTREAVANAQENG 242

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTKYG +NTDHILFIASG
Sbjct: 243 IVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKYGPVNTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY  LM TEG+ L+F
Sbjct: 303 AFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLNF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +D+IDALA++A ++N  V +IGARRL TV+ER+LED+SF+ASD + +TV ++A  V+  
Sbjct: 363 ADDAIDALAELAADINDRVENIGARRLATVLERLLEDVSFTASDRKGETVEVNAAMVQEK 422

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 423 VAPLARKGDLSRFIL 437


>gi|94967243|ref|YP_589291.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549293|gb|ABF39217.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Koribacter versatilis Ellin345]
          Length = 472

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/459 (48%), Positives = 326/459 (71%), Gaps = 25/459 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PREIV+ELD+Y++GQ +AKRAVAIALRNR RRQ+L  DL +E++PKNI+++GPT
Sbjct: 15  MLDELTPREIVAELDKYVVGQHEAKRAVAIALRNRMRRQRLTPDLAEEIIPKNIIMIGPT 74

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA +PF+KVE +KFTE+GYVGR+VE +IRDLV++AI+++RE + D+V
Sbjct: 75  GVGKTEIARRLAKLANSPFLKVEASKFTEVGYVGRDVESMIRDLVEIAIDMIREEKLDDV 134

Query: 123 REQASINAEERILDA------------------------LVGKTATSNTREVFRKKLRDG 158
            ++A +NAEER+LD                         L G    S TRE  R++LR+G
Sbjct: 135 ADKAEMNAEERLLDLLLPSSPQPAAAHEAGAGFTQGQLELPGDGGGSRTREKLRQQLREG 194

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           ++ ++ ++++V + +          G     +N+ ++   + GS R KK +M V + +  
Sbjct: 195 KLDERTVELDVREKNFPAFEIISNQGVEEMDINMKDMLPNIFGS-RTKKRKMKVNEAFDY 253

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+++E  RLIDM+ V R +++ VE  GI+FLDE DKI  R+ G+G  VSREGVQRD+LP+
Sbjct: 254 LIQEEEQRLIDMEQVQRVAVERVEQSGIIFLDEIDKIAGREGGHGPDVSREGVQRDILPI 313

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEG++ +T+YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF  IL
Sbjct: 314 VEGTTCNTRYGMVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLSVADFIKIL 373

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ +S+L+ QY  L++TEG+ L+FT D++D +A+ A  +N    +IGARRL T+ME+VL+
Sbjct: 374 TEPKSSLVKQYTALLETEGVKLEFTRDALDEVANFAAIVNEGTENIGARRLHTIMEKVLD 433

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ISFSA DL+ K V +DAEYVR  +       D+  +IL
Sbjct: 434 EISFSAPDLENKNVTVDAEYVRNALVHIVKNQDLSRYIL 472


>gi|258542120|ref|YP_003187553.1| ATP-dependent protease ATP-binding subunit HslU [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633198|dbj|BAH99173.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636257|dbj|BAI02226.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639310|dbj|BAI05272.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642366|dbj|BAI08321.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645421|dbj|BAI11369.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648474|dbj|BAI14415.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651527|dbj|BAI17461.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654518|dbj|BAI20445.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 437

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/435 (54%), Positives = 329/435 (75%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+
Sbjct: 65  KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AEERI+DAL G+ ++++T+  FR  LR G++ DKEIDI V + +   S+ D+PG  
Sbjct: 125 ARQAAEERIIDALAGEGSSADTKSKFRSMLRSGQLEDKEIDIAVTEQAPAGSS-DMPGAV 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
               +N+ ++    M  G  K+ ++ V      L R+E+DRL+D + + R+++   +  G
Sbjct: 184 PGQAINVGDMMKAFMNRG-PKQKKLKVSVAREYLKREEADRLLDGEALTREAVANAQENG 242

Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S +G     VSREGVQRDLLPL+EG++VSTK+G +NTDHILFIASG
Sbjct: 243 IVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKHGPVNTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY  LM TEG+ L+F
Sbjct: 303 AFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLNF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D+IDALA++A ++N  V +IGARRL TV+ER+LE++SF+ASD + +TV ++A  V+  
Sbjct: 363 TDDAIDALAELAADINDRVENIGARRLATVLERLLEEVSFTASDRKGETVEVNAAMVQEK 422

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 423 VAPLARKGDLSRFIL 437


>gi|91781465|ref|YP_556671.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans
           LB400]
 gi|123169129|sp|Q146X0|HSLU_BURXL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91685419|gb|ABE28619.1| Heat shock protein HslU [Burkholderia xenovorans LB400]
          Length = 448

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/447 (47%), Positives = 308/447 (68%), Gaps = 18/447 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTKA 123

Query: 127 SINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
              AE+RILD L+                     S TR+ FRK+LR+G + DKE++++V 
Sbjct: 124 EDQAEDRILDILLPSARPVGFGASSGAADTVDEGSTTRQTFRKRLREGLLDDKEVELDVE 183

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +     PG        +  +F+ + G G+K + +M V++    L  +E+ R+++ 
Sbjct: 184 QPQVGMDIMGPPGM-EDMTEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAARMLND 241

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + V   ++Q VE  GIVFLDE DKI +R+   G  VSR+GVQRDLLPLVEG++++TKYG 
Sbjct: 242 EEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+
Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQYQ 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   +
Sbjct: 362 ALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSGR 421

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
           TV IDA YV   + +   + D+  ++L
Sbjct: 422 TVQIDAAYVDRALNEVAEDEDLSRYVL 448


>gi|226313075|ref|YP_002772969.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus
           brevis NBRC 100599]
 gi|226096023|dbj|BAH44465.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus
           brevis NBRC 100599]
          Length = 473

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/462 (43%), Positives = 303/462 (65%), Gaps = 32/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR IV  LD+YI+GQ  AK+A+A+ALRNR+RR +LP  + DE++PKNIL++GPTGVG
Sbjct: 14  QLTPRTIVEHLDKYIVGQAQAKKAIAVALRNRYRRSRLPEQMIDEVVPKNILMIGPTGVG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ +I  V++ + + V+E+
Sbjct: 74  KTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEASIRTVKQEKVESVKEK 133

Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155
           A   A E I++ LV     SN+                              R     +L
Sbjct: 134 AEKLANEAIVNVLVPSRKQSNSFKNPLEMFFGGQQQQQQDTTDQEEVSIEQQRRQVMWQL 193

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G++ ++ I+IEV D S  + +     G     + + ++   +M   R KK ++ ++  
Sbjct: 194 TNGQLEEQMIEIEVEDQSPSMFDMFQVPGTEQMGMQMQDMLGSLM-PKRMKKRKLRIKDA 252

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L++ E+ +L+DMD V ++SI+  E +GI+F+DE DKI  +D G G  VSREGVQRD+
Sbjct: 253 RKVLIQQEAQKLVDMDEVTQESIRRAEQHGIIFIDEIDKIAGKD-GRGPDVSREGVQRDI 311

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL   DF 
Sbjct: 312 LPIVEGSTVMTKYGPVKTDYVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLRVEDFV 371

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ L+ QY  L++TEG+ ++FT ++I  LA +A  +N +  +IGARRL T++E+
Sbjct: 372 RILTEPKNALLKQYVALLETEGVQVEFTPEAIQELARLAAEVNQSTDNIGARRLHTILEK 431

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF A ++  + V I  +YV+  +G      D+  +IL
Sbjct: 432 LLEDLSFEAPEIHLEVVQITPDYVKQKLGTIVGNKDLSQYIL 473


>gi|215919320|ref|NP_820987.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           RSA 493]
 gi|206584205|gb|AAO91501.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii RSA 493]
          Length = 465

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 307/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 199 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 255

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 256 VDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEGSTVFTK 315

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 316 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTE 375

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 376 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 435

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 436 QGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|319945236|ref|ZP_08019498.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia
           mirabilis ATCC 51599]
 gi|319741806|gb|EFV94231.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia
           mirabilis ATCC 51599]
          Length = 450

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/452 (50%), Positives = 308/452 (68%), Gaps = 22/452 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIVSELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E++PKNIL++GPTGV
Sbjct: 2   TQMTPQEIVSELDKHIIGQDKAKRAVAIALRNRWRRQQVAEPLRHEIVPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVG++V+ IIRDL++ AI   R+  +  V  
Sbjct: 62  GKTEIARRLARLANAPFIKIEATKFTEVGYVGKDVDSIIRDLMEAAIKEERDRAKQRVDA 121

Query: 125 QASINAEERILDALVGKTA-------------------TSNTREVFRKKLRDGEISDKEI 165
           +A   AEER+LDAL+  +A                    S  R+ FRK+LR+G++ DKEI
Sbjct: 122 RARDLAEERVLDALLPSSAHQRAPTDYRDLEKPISTADDSVARQKFRKRLREGDLDDKEI 181

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I+VA    +I     P G       L  +   +   G+ ++ +M + +    L+ +E+ 
Sbjct: 182 EIDVAQPMPNIGIM-GPAGMEELTNQLQGMMQGL--PGKTRQRKMRIAEAMKLLVDEEAG 238

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +L++ + +   ++  VE  GIVFLDE DKI  R    G  VSR+GVQRDLLPLVEG++V+
Sbjct: 239 KLVNDEEIKLTALANVEQNGIVFLDEIDKIAVRSGVQGGDVSRQGVQRDLLPLVEGTAVN 298

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           T+YG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DFR ILT+T+++L
Sbjct: 299 TRYGVVKTDHILFIASGAFHLSKPSDLVPELQGRFPIRVELSSLSVEDFRRILTETDASL 358

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY+ L+ TEGI LDF ED I+ LA+ A  +N    +IGARRLQTVMER+LE++SF   
Sbjct: 359 TKQYQALLATEGITLDFREDGINKLAETAFRVNEGTENIGARRLQTVMERLLEEVSFQGD 418

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
               +TVVIDA +V   +GD   + D+  ++L
Sbjct: 419 RRSGETVVIDAAFVEERLGDIARDEDLSRYVL 450


>gi|312797560|ref|YP_004030482.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Burkholderia rhizoxinica HKI 454]
 gi|312169335|emb|CBW76338.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Burkholderia rhizoxinica HKI 454]
          Length = 448

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/450 (47%), Positives = 308/450 (68%), Gaps = 15/450 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++G
Sbjct: 1   MPNMTTMTPAEIVSELDKHIIGQGRAKRAVAVALRNRWRRQQVLDPLRQEITPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++   RES   
Sbjct: 61  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTRESEMR 120

Query: 121 EVREQASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDI 167
           +VR +A   AE+RILD L+ +                S TR+  RK+LR+G++ DKEI++
Sbjct: 121 KVRTKAQDLAEDRILDILLPQARPVGFSPTSEESERESATRQTLRKRLREGQLDDKEIEL 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++      +     PG   +    +  +F+  +G G+K+  ++ +++    L  +E+ ++
Sbjct: 181 DIEAPQVGMDIMGPPGMEEM-TEQIRSMFAN-LGGGKKQHRKVKIKEALKLLTDEEAGKM 238

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ++ + +   ++Q  E  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TK
Sbjct: 239 VNEEDIKTRAVQNAEQNGIVFLDEIDKIASRQEAGGGEVSRQGVQRDLLPLVEGTTINTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ 
Sbjct: 299 YGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVGDFESILVRTDASLVK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE+ISFSA + 
Sbjct: 359 QYQALLATEDVHLEFADDGIKRLAEIAFSVNEKTENIGARRLYTVIEKLLEEISFSAGNH 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             ++V IDA YV   + D     D+  ++L
Sbjct: 419 SGQSVKIDAAYVDSALNDVSQNEDLSRYVL 448


>gi|329848325|ref|ZP_08263353.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           biprosthecum C19]
 gi|328843388|gb|EGF92957.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           biprosthecum C19]
          Length = 432

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 245/433 (56%), Positives = 335/433 (77%), Gaps = 2/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIG  DAK+AVA+ALRNRWRR+   A +RDE+ PKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRHIIGHNDAKKAVAVALRNRWRRKATDASIRDEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ A+ ++++  R  VR 
Sbjct: 62  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAMLMIKDKNRAGVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEER++DALVG TA   TR+ FRKKLR+ E+ DKE+++++ +T S I   +IPG 
Sbjct: 122 KAEAAAEERLIDALVGNTAGQATRDSFRKKLRNNELDDKEVELQLTETGSPIGMIEIPGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A     NL ++ SK M  GRKK ++ SV+  +P L+ +ESDRL+D + V  +++ + EN 
Sbjct: 182 AGNN-FNLGDMLSKAM-GGRKKTVKTSVKAAWPTLIAEESDRLLDQEAVASEALSLAENE 239

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 240 GIVFLDEIDKVASRSERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LMKTEG+ L+F +
Sbjct: 300 HVAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMKTEGVTLEFDD 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
            +I  +A  A ++N+ V +IGARRL TV+E+V+E++S++ASD+  +TV+IDA+YV+  +G
Sbjct: 360 GAIAEMAAAAASVNAKVENIGARRLHTVIEKVMEELSYAASDMAGQTVLIDADYVKRRLG 419

Query: 425 DFPSETDMYHFIL 437
           D  ++ D+  +IL
Sbjct: 420 DIATDADLSRYIL 432


>gi|212219520|ref|YP_002306307.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           CbuK_Q154]
 gi|212013782|gb|ACJ21162.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 465

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 307/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 199 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 255

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 256 VDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEGSTVFTK 315

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 316 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTE 375

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 376 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 435

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 436 QGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|83721034|ref|YP_440722.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
 gi|167579395|ref|ZP_02372269.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis TXDOH]
 gi|123726686|sp|Q2T277|HSLU_BURTA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|83654859|gb|ABC38922.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           thailandensis E264]
          Length = 447

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 362 LLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDAAYVDRALGEVSKDEDLSRYVL 447


>gi|317152586|ref|YP_004120634.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942837|gb|ADU61888.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 459

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/458 (48%), Positives = 307/458 (67%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDRYIIGQ  AKR VAIA+RNRWRRQQL  +LRD++ PKNI+L+GPTGVG
Sbjct: 3   NLTPREIVSELDRYIIGQDAAKRMVAIAMRNRWRRQQLDPELRDDIAPKNIILMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA  PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+   ++VR +
Sbjct: 63  KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122

Query: 126 ASINAEERILDALVGKTA-------------------------TSNTREVFRKKLRDGEI 160
           A  NAEER+LD L+ ++                             TRE FR+  R G++
Sbjct: 123 AEKNAEERLLDLLLPRSKPGGGQAGFFMGSQSGEIEEKQETGRDDATREKFRQMFRAGQL 182

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            ++E+++EV   S          G      NL   F+ +  S R K+ +M +++ Y  L+
Sbjct: 183 DEREVELEVRVQSGAQVEIMAIPGMEGMGSNLQSAFANMFPSKR-KQRKMKIREAYLVLV 241

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLV 279
            +E+++LID D V+  + + VE  GI+FLDE DKI +R D   G  VSREGVQRDLLP+V
Sbjct: 242 DEEAEKLIDPDAVNELARERVEQQGILFLDELDKIASRHDQAGGADVSREGVQRDLLPVV 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R  L SL+K +F  ILT
Sbjct: 302 EGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREALDSLHKEEFYRILT 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + L +QYK L+ TEG+ +DFT ++++ +A  A  +N    +IGARRL T+ME++L +
Sbjct: 362 EPRNALTVQYKALLGTEGVSVDFTREALEEIAATAEKINEETENIGARRLYTIMEKILAN 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +S+ A D    TVVID +YV   +GD     D+  +IL
Sbjct: 422 LSYEAPDKSGVTVVIDRDYVLEQLGDVVENRDLSRYIL 459


>gi|304311982|ref|YP_003811580.1| Heat shock protein chaperone [gamma proteobacterium HdN1]
 gi|301797715|emb|CBL45937.1| Heat shock protein chaperone [gamma proteobacterium HdN1]
          Length = 446

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/448 (50%), Positives = 314/448 (70%), Gaps = 19/448 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP  +R+E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVSELDKHIIGQHDAKRAVAIALRNRWRRMQLPETMRNEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+A+ +VRE   ++VR +A
Sbjct: 61  TEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLADMAVKLVREQEMEKVRNRA 120

Query: 127 SINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADTS 173
              AE+RILD LV +  +S+             TR+VFRKKLR+G++ DKEI+IE+A  S
Sbjct: 121 LDAAEDRILDVLVPQPRSSDWQTSTLERNEDSATRQVFRKKLREGQLDDKEIEIELAAPS 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +     PG   +    L  +FS +  SG+ KK R+ ++  +  +  +E+ +L++ D +
Sbjct: 181 VGVEIMAPPGMEEM-TSQLQSMFSSI-SSGKLKKKRLKIKDAFTRIQDEEAAKLVNEDEI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE  GIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +V+TKYG + T
Sbjct: 239 KGRAVKAVEQNGIVFIDEIDKVAKRGEFSGSDVSREGVQRDLLPLIEGCTVNTKYGMVRT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+   ++  QYK L+
Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELQALSADDFVKILTEPNCSITEQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-- 411
             EG+ +DF +D+I  +A++A  +N  V +IGARRL TVME++LEDIS+ ASDL  +   
Sbjct: 359 GAEGLKVDFADDAIRRIAEIAWQVNERVENIGARRLHTVMEKLLEDISYDASDLATQHGE 418

Query: 412 --VVIDAEYVRLHIGDFPSETDMYHFIL 437
              ++ A+ V   +       D+  +IL
Sbjct: 419 NVYMLHAQQVDDRLQALAGNEDLSRYIL 446


>gi|294500944|ref|YP_003564644.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           QM B1551]
 gi|294350881|gb|ADE71210.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium
           QM B1551]
          Length = 466

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/467 (42%), Positives = 302/467 (64%), Gaps = 33/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +PR+IV +LD+YIIGQ  AK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R++A  NA +RI++ LV       +                               R+  
Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L  GE+ +  + IEV +    + +     G     +N+ +  S  M   ++KK +++
Sbjct: 181 AHQLALGELENHYVTIEVEEQQPSMFDMLQGSGMEQMGMNMQDALSNFM-PKKQKKRKLT 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREG 270
           V+     L  +E+ +LIDMD V ++++   E YGI+F+DE DKI  +  + +   VSREG
Sbjct: 240 VKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKIAQKSANSSSADVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L  L 
Sbjct: 300 VQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELTKLT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL + ++ L+ QY  L++TEGI ++F++D+I  +A++A  +N    +IGARRL 
Sbjct: 360 VEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGARRLH 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+SF A ++  + +VI  +YV   +       D+  FIL
Sbjct: 420 TILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466


>gi|77361646|ref|YP_341221.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588929|sp|Q3IJD5|HSLU_PSEHT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|76876557|emb|CAI87779.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Pseudoalteromonas haloplanktis TAC125]
          Length = 442

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/441 (49%), Positives = 310/441 (70%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR+E+ PKNIL++GPTGVGK
Sbjct: 4   MTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLSDDLRNEVTPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTEIGYVG+ VE IIRDLVDVAI + RE +  + + +A
Sbjct: 64  TEIARRLAKLANAPFIKVEATKFTEIGYVGKEVETIIRDLVDVAIKMTREQQTKKFKHRA 123

Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+              +S+TR+ FRKKLR+G++ DKEI+I++A    ++
Sbjct: 124 EEAAEERILDALLPPAKDQYGESQRDDSSSTRQTFRKKLREGQLDDKEIEIDLAQAQPNV 183

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG        L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +   
Sbjct: 184 EIMAPPGM-EDMTNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLSEEEAAKLVNPEELKEQ 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG +VSTK+G + TDH+
Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTDHM 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF +++P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KTE
Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKTE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + ++F++D+I+ +A  A  +N    +IGARRL TVME+++E+IS+ AS+    ++V+DA
Sbjct: 362 QVTIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGTSLVVDA 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV  H+G    + D+  +IL
Sbjct: 422 AYVEKHLGALVEDEDLSRYIL 442


>gi|218885411|ref|YP_002434732.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226704521|sp|B8DPH7|HSLU_DESVM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218756365|gb|ACL07264.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 483

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 213/482 (44%), Positives = 298/482 (61%), Gaps = 51/482 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD+YI+GQ  AKR VA+A+RNRWRRQQL   LRDE+ PKNI+++GPTGVG
Sbjct: 3   NLTPREIVSELDKYIVGQNAAKRMVAVAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ +PFIKVE TKFTE+GYVGR+VE ++RDL+++ I +VR    ++VR +
Sbjct: 63  KTEIARRLAKLSASPFIKVEATKFTEVGYVGRDVESMVRDLMEIGIALVRAEENEKVRVK 122

Query: 126 ASINAEERILDALVG--------------------------------------------- 140
           A   AEER+LD L+                                              
Sbjct: 123 AEARAEERLLDLLLPGGAPQPAPAQGMGGLTFDLSASHSGGQAIPQPPAQADASQASPPT 182

Query: 141 -----KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
                  + S+TRE  R     G++ D+E+D+EV ++           G       + ++
Sbjct: 183 GTGSAPDSRSSTREKLRTLWHGGKLDDREVDMEVEESGGPQVGVLSMPGLEDVGSQVRDM 242

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
           FSKV  S RK++     +  +  L ++E+DRLID D V   + + VE  GI+F+DE DKI
Sbjct: 243 FSKVFPSRRKRRRMKV-RDAFNLLTQEEADRLIDHDRVSDLARERVEQTGIIFIDEIDKI 301

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
            +  +     VSREGVQRDLLP+VEGS V+TKYG + TDHILFIA+GAFH S+P+DL+PE
Sbjct: 302 ASGSTQKSSDVSREGVQRDLLPIVEGSVVNTKYGMVRTDHILFIAAGAFHFSKPSDLIPE 361

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGRFP+R  L +L K DF  ILT+  + L  QY  L++TEG+ ++FT D++  +A  A 
Sbjct: 362 LQGRFPLRAELSALGKDDFLRILTEPHNALTRQYTALLQTEGVHIEFTGDALREIAAFAE 421

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHF 435
             N+   +IGARRL T++E++L D+SF A D     V +D++YVR H+ D  +  D+  +
Sbjct: 422 ETNAQTENIGARRLYTILEKILADLSFEAPDRSGDRVTVDSDYVREHLADVRANKDLSRY 481

Query: 436 IL 437
           IL
Sbjct: 482 IL 483


>gi|167617495|ref|ZP_02386126.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis Bt4]
          Length = 444

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 359 LLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 419 VTIDAAYVDRALGEVSKDEDLSRYVL 444


>gi|238898390|ref|YP_002924071.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491374|sp|C4K5T0|HSLU_HAMD5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|229466149|gb|ACQ67923.1| ATPase component of the HslUV protease, also functions as molecular
           chaperone [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 443

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV +LD YIIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPSEIVKKLDDYIIGQDDAKRAVAIALRNRWRRMQLDTELRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D A+ +VR    +++R++
Sbjct: 63  KTEIARRLAKLAEAPFIKVEATKFTEVGYVGKEVESIIRDLTDTAVKMVRHQAIEKMRDK 122

Query: 126 ASINAEERILDAL-----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   A+ERILD L            G   TS  R+ F + L  GE++++EI+I++A T  
Sbjct: 123 AKELAQERILDILVSPARNSSGQVEGSQNTSTARQFFLEPLIKGELNEQEIEIDLAVTPV 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           DI     PG   +    L  +F   M S + K  +M +      L+ +E+ +L++ + + 
Sbjct: 183 DIEIMSPPGMEEM-TNQLQSMFQH-MSSQKHKIRKMKIGDALKLLIDEEASKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE  GIVF+DE DKI    S +   VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QVAIHSVEQNGIVFIDEVDKICRHGSKSTSDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGRFP+RV LKSL   DF  ILT+  ++L  QYK LMK
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRFPIRVELKSLTPKDFERILTEPSASLTYQYKSLMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEGI ++FT+D I ++A  A  +N    +IGARRL T++ERV+EDIS++A  +++K++ I
Sbjct: 361 TEGIKIEFTKDGITSIAGAAGQVNENTENIGARRLHTILERVMEDISYNADKIKKKSITI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D++YV  H+    +  D+  FIL
Sbjct: 421 DSKYVDTHLSKLINNEDLSRFIL 443


>gi|167585119|ref|ZP_02377507.1| ATP-dependent protease ATP-binding subunit [Burkholderia ubonensis
           Bu]
          Length = 447

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 314/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +G G+K + ++ + +    L  +E+ ++++ + 
Sbjct: 184 TIGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKISEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVSTDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F ED I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   + 
Sbjct: 362 LLATEDVQLEFAEDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGEC 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVERALGEVSQDEDLSRYVL 447


>gi|330993964|ref|ZP_08317894.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp.
           SXCC-1]
 gi|329758910|gb|EGG75424.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp.
           SXCC-1]
          Length = 437

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/435 (54%), Positives = 319/435 (73%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDRYIIGQ DAKRAVAIALRNRWRR QL   +R+E++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRYIIGQTDAKRAVAIALRNRWRRAQLTDAMREEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++RE RR +V  +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRELRRRDVEVK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE  +LDALVG+ A++ TR  FR+ LR GE+  KE++I +A+  S  +  D+    
Sbjct: 125 AEGAAENILLDALVGEGASAETRNKFRRMLRAGELEGKEVEISIAE-GSGPAQPDMSSMT 183

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              ++N S++    M    ++K  M+V +    L R E+D+++D + + R+++   +++G
Sbjct: 184 PGAVINFSDMMKGFMNRMPQQKR-MTVAEARAALTRQEADKMLDTEALTREAVAHAQDHG 242

Query: 246 IVFLDEFDKIVARDS---GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+ AR S     G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 243 IVFLDEIDKVCARASEGGSRGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY  L+ TE + L F
Sbjct: 303 AFHIAKPSDLLPELQGRLPIRVELASLTRDDLRRILTEPEHSLLQQYIALLGTEKVTLSF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+ +IDALA++A ++N  V +IGARRL TV+ER+LE +SF+A D   ++VVIDA  V+  
Sbjct: 363 TDAAIDALAELAADINERVENIGARRLATVLERLLESVSFTAPDRSGQSVVIDAADVQEK 422

Query: 423 IGDFPSETDMYHFIL 437
           +    S+ D+  FIL
Sbjct: 423 VAPLASKGDLSRFIL 437


>gi|303326952|ref|ZP_07357394.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302862940|gb|EFL85872.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 437

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 202/435 (46%), Positives = 300/435 (68%), Gaps = 5/435 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ L  +LRDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLSPELRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE     VR+ A
Sbjct: 64  TEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRKAA 123

Query: 127 SINAEERILDAL----VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
              AE R++D L     G+   ++TR+   ++ R G +  +E+++EV +      +    
Sbjct: 124 EAAAESRLMDLLLPNSFGQEERNSTRDKLLQQFRLGFLDQREVEMEVTEQGGQGVDIFAI 183

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G       + ++FSK     R  + +M ++  +  L+++ES +L+D + +   + + VE
Sbjct: 184 PGMEQMGGQVKDMFSKAFPPRRS-RRKMKIRDAFNVLVQEESGKLVDQEALTERAKERVE 242

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GI+F+DE DKI +    +   +SREGVQRDLLP+VEGSSV+TKYG + TDHILFIA+G
Sbjct: 243 QSGIIFIDEIDKIASSSQNSTSDISREGVQRDLLPIVEGSSVNTKYGMVRTDHILFIAAG 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH S+P+D++PE+QGRFP+RV L++L K +F  ILT+ ++ L  QY+ L+ TE I L F
Sbjct: 303 AFHFSKPSDMIPELQGRFPLRVELQALGKEEFLRILTEPDNALTKQYEALLGTEQIRLSF 362

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T D ++ +A  A + NS   +IGARRL T+ME++L DISF A D+    +V++ +YV  H
Sbjct: 363 TRDGLEEVAAFAEDTNSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRDYVCEH 422

Query: 423 IGDFPSETDMYHFIL 437
           + D   + D+  +IL
Sbjct: 423 LQDVRKDQDLSQYIL 437


>gi|15825803|pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
          Length = 444

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 300/441 (68%), Gaps = 12/441 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL +GPTGVGKT
Sbjct: 5   TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A  +VR+    + R +A 
Sbjct: 65  EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAE 124

Query: 128 INAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             AEERILDAL+              + S+TR+ FRKKLR+G++ DKEI+I+V+   S  
Sbjct: 125 DVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXG 184

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  LF   +GS + KK +  ++     L+ DE+ +LI+ + + + 
Sbjct: 185 VEIXAPPGXEEXTNQLQSLFQN-LGSDKTKKRKXKIKDALKALIDDEAAKLINPEELKQK 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDHI
Sbjct: 244 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK L  TE
Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT D++  +A+ A  +N    +IGARRL TV ER+ + ISFSASD   +TV IDA
Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   +G+     D+  FIL
Sbjct: 424 AYVADALGEVVENEDLSRFIL 444


>gi|254516116|ref|ZP_05128176.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR5-3]
 gi|219675838|gb|EED32204.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR5-3]
          Length = 442

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/443 (51%), Positives = 303/443 (68%), Gaps = 14/443 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+   LR E+ PKNIL++GPTGVG
Sbjct: 3   NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEEGLRAEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++++ ++RE   D++R +
Sbjct: 63  KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMSVKMLREQAMDKMRFR 122

Query: 126 ASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A   AEERILD L+     +          TR++ RKKLR+GE+ DKEID+E+  T+   
Sbjct: 123 AEEAAEERILDVLLPGARDTKGDATSQGDGTRQLLRKKLREGELDDKEIDLEL--TAPSN 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G       L  +FS  M   + K  R+ ++  +  L  +E+ +L++ D + ++
Sbjct: 181 VEISAPPGMEEMTSQLQSMFSN-MARTQSKTRRLPIKAAFAALCDEEAAKLVNEDDIKQN 239

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++   E  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG +VSTKYG + TDHI
Sbjct: 240 ALHAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTDHI 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L +L+  DFR IL + ++ L  QY  L+ TE
Sbjct: 300 LFIASGAFHLSKPSDLIPELQGRMPIRVELAALSPEDFRRILVEPDTALTRQYSALLATE 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVI 414
           G+ L+FTED I  +A++A  LN    +IGARRL TVMER+LED SF A+D  L    + +
Sbjct: 360 GMTLEFTEDGIARIAELAWQLNENTENIGARRLHTVMERLLEDASFRAADDGLNASVLAV 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   + D   + D+  FIL
Sbjct: 420 DAAYVDSQLSDLAMDEDLSRFIL 442


>gi|167568322|ref|ZP_02361196.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis C6786]
          Length = 444

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/446 (46%), Positives = 314/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DK++++++   
Sbjct: 121 TDQAEDRILDILLPQPRAVGFGAGSEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +G G+K + ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLNEEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SF+A +   + 
Sbjct: 359 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQR 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 419 VTIDAAYVDRALGEVSRDEDLSRYVL 444


>gi|170703231|ref|ZP_02894034.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria IOP40-10]
 gi|170131864|gb|EDT00389.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria IOP40-10]
          Length = 447

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 317/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFARDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDANYVDRALGEVAQDEDLSRYVL 447


>gi|171060508|ref|YP_001792857.1| ATP-dependent protease ATP-binding subunit HslU [Leptothrix
           cholodnii SP-6]
 gi|170777953|gb|ACB36092.1| heat shock protein HslVU, ATPase subunit HslU [Leptothrix cholodnii
           SP-6]
          Length = 451

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/453 (48%), Positives = 306/453 (67%), Gaps = 22/453 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIV+ELDR+I+GQQ AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MSLTPQEIVAELDRHIVGQQQAKRAVAIALRNRWRRQQVDDKLRGEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+ AI   RE +   +R 
Sbjct: 61  GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVESAIKQERERQVTLMRS 120

Query: 125 QASINAEERILDALVGKT--------------------ATSNTREVFRKKLRDGEISDKE 164
           +A   AE+RILD LV                       A +  R+V RK+LR+G + DKE
Sbjct: 121 RAEDAAEDRILDILVPPPRSAGRSDFGFLEPQATPAPAADNTARQVMRKRLREGTLDDKE 180

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+I++AD    +     P G       L  LFS+ MG G++++ ++ + +    L+ +E+
Sbjct: 181 IEIDLADAKPTLEIM-GPAGMEAMADQLKGLFSQ-MGQGKRQQRKVKIGEARRLLVDEEA 238

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            +L++ D     ++   E  GIVF+DE DK+ +  +  G  VSR+GVQRDLLPLVEG+SV
Sbjct: 239 QKLVNEDETRSRALLHTEQNGIVFIDEIDKVASSGNTQGADVSRQGVQRDLLPLVEGTSV 298

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            TKYG + TDHILFIASGAFHVS+P+DL+PE+QGRFP+RV L++L+  DF  IL+ T ++
Sbjct: 299 QTKYGLVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELQALSVDDFEAILSSTHAS 358

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+ L+ TEG+ L+F  D++  LA +A ++N    +IGARRL TV+ER+L++ISF A
Sbjct: 359 LIKQYQALLATEGVTLEFAPDAVRRLAQIAFDVNERTENIGARRLATVLERLLDEISFDA 418

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             L   TV IDA  V   + +  +  D+  ++L
Sbjct: 419 PGLAGSTVQIDAALVDRKLAELAANEDLSRYVL 451


>gi|330813379|ref|YP_004357618.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486474|gb|AEA80879.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 439

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/432 (56%), Positives = 330/432 (76%), Gaps = 1/432 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +FSPREIVSELDRY+IGQ DAK+AVAIALRNRWRRQ+LP DLR+E++PKNIL+VGPTGVG
Sbjct: 9   SFSPREIVSELDRYVIGQADAKKAVAIALRNRWRRQELPDDLREEVLPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRL++L+ APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV  +
Sbjct: 69  KTEISRRLSKLSEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKEKKRKEVEAK 128

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           + +++EER+LD LVGK+AT  TRE FRK+LR G++ D  I+I V D  S  S        
Sbjct: 129 SQLSSEERVLDTLVGKSATPATRESFRKRLRAGDLDDTVIEIAVQDNPSTPSFEIPGMQG 188

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG++N+ ++F K     +KKK     +  Y  ++++ESD+LID D + +++   VEN G
Sbjct: 189 GVGMVNIGDIFGKGSAGKKKKKKMSVKES-YEYIIQEESDKLIDQDQIIKEAKFSVENNG 247

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DK+ AR   +G  VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF 
Sbjct: 248 IVFLDEIDKVSARSERSGTDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAFQ 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++P+DLLPE+QGR P+RV L+ L K DF  IL + +++LI QY  LMKTE + L FT+D
Sbjct: 308 LAKPSDLLPELQGRLPIRVELQPLTKQDFVRILKEPDNSLIKQYVALMKTENVELQFTDD 367

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I+ LA+++  +NST+ +IGARRL T++E+VLE+ISFSA D   + +V+D  +V+ ++GD
Sbjct: 368 GIEELAEISSQINSTIENIGARRLHTILEKVLEEISFSAPDKSGEKIVVDKSFVQKNLGD 427

Query: 426 FPSETDMYHFIL 437
              + D+  FIL
Sbjct: 428 IIKDKDLSKFIL 439


>gi|258404689|ref|YP_003197431.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium
           retbaense DSM 5692]
 gi|257796916|gb|ACV67853.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium
           retbaense DSM 5692]
          Length = 474

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/452 (47%), Positives = 303/452 (67%), Gaps = 23/452 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+++IGQ +AKR VAIALRNRWRRQQL  +L +E+ PKNI+++GPTGVGK
Sbjct: 25  LTPREIVAELDKFVIGQDEAKRMVAIALRNRWRRQQLDPELAEEIAPKNIIMIGPTGVGK 84

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF KVE +KFTE+GYVGR+VE +IRDL+++ I +VR+   D VR +A
Sbjct: 85  TEIARRLAKLARAPFFKVEASKFTEVGYVGRDVESMIRDLMEIGITLVRQEEMDRVRGKA 144

Query: 127 SINAEERILDAL---------------------VGKTATSNTREVFRKKLRDGEISDKEI 165
              AEE++LD L                      G+ A  +TRE FR   R G + D+ +
Sbjct: 145 EEQAEEKLLDLLLPRGGKEDTAPSGQTFSDAAASGEGAKQSTREKFRTLFRQGRLDDRLV 204

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++V      +    +PG   +      ++FSK+M   + K  +M V+  Y  L+++ESD
Sbjct: 205 EVQVQAQGPQLQMASMPGMEEMET-QFKDMFSKIM-PKKSKTRKMQVRDAYEHLVQEESD 262

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +LIDMD V   + + VE  GI+FLDE DK+ ++  G    VSREGVQRDLLP+VEG  V+
Sbjct: 263 KLIDMDKVSEKARERVEQNGIIFLDEIDKVCSQREGGQTDVSREGVQRDLLPVVEGCVVN 322

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TK+G + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV L +L K++F  ILT+ ++ L
Sbjct: 323 TKHGMVRTDHILFIAAGAFHYAKPSDLIPELQGRFPLRVELAALEKAEFYRILTEPQNAL 382

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
            +QY+ L+ TE + L FT+D++  +A  A  +N    +IGARRL T+ME++L  +SF A 
Sbjct: 383 TVQYEALLGTEQVALSFTDDALQEVAAFAQRVNEETENIGARRLYTIMEKILNTLSFEAP 442

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D     VV+DAEYVR H+     + D+  +IL
Sbjct: 443 DKAGIEVVVDAEYVRQHLEGLEEDRDLTRYIL 474


>gi|114762242|ref|ZP_01441710.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114545266|gb|EAU48269.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
           HTCC2601]
          Length = 436

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/436 (55%), Positives = 328/436 (75%), Gaps = 4/436 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELDR+IIGQQDAKRAV++ALRNRWRR+QL  DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPREIVSELDRFIIGQQDAKRAVSVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE  R++V+ 
Sbjct: 62  GKTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIALTREHMREDVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A   AEER+++A+ G  A  +TRE+FRKKLR+GE+   EI+++VA+T+S     +IPG 
Sbjct: 122 AAHKAAEERVIEAIAGTDARESTREMFRKKLRNGELDGTEIELDVAETASPFPMMEIPGQ 181

Query: 185 ASVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
              G +   NLSE+F K    GR  + +++V + Y  L+++E+D+L+D + V + +++ V
Sbjct: 182 PGQGGMGMMNLSEMFGKAF-GGRTTRKKLTVAESYEILIQEEADKLLDDEVVKKAALEAV 240

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIAS
Sbjct: 241 EQNGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIAS 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV+L++L + DF  ILT+T++ L  QY  LM TE + ++
Sbjct: 301 GAFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVTVE 360

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED I ALA +A  +N +V +IGARRL TVMERV E++SF+A D     + +D  +V  
Sbjct: 361 FTEDGIHALARIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGDKITVDDAFVET 420

Query: 422 HIGDFPSETDMYHFIL 437
           ++G+     D+  ++L
Sbjct: 421 YLGELTRSADLSRYVL 436


>gi|332532291|ref|ZP_08408171.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038158|gb|EGI74604.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/442 (49%), Positives = 310/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLKEDLRSEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE +  + + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122

Query: 126 ASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               S+TR+ FRKKLR+G++ DKEI+I++A    +
Sbjct: 123 AEEAAEERILDALLPPAKDQYGETQRDDNSSTRQAFRKKLREGQLDDKEIEIDLAQAQPN 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG        L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +  
Sbjct: 183 VEIMAPPGM-EDMTNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAAKLVNPEELKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH
Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAF +++P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KT
Sbjct: 301 MLFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F++D+I+ +A  A  +N    +IGARRL TVMER++E+IS+ AS+    ++VID
Sbjct: 361 EQVSIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+G    + D+  FIL
Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442


>gi|108761314|ref|YP_631222.1| ATP-dependent protease ATP-binding subunit HslU [Myxococcus xanthus
           DK 1622]
 gi|123247816|sp|Q1D801|HSLU_MYXXD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|108465194|gb|ABF90379.1| heat shock protein HslVU, ATPase subunit HslU [Myxococcus xanthus
           DK 1622]
          Length = 459

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/456 (47%), Positives = 310/456 (67%), Gaps = 25/456 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI+++GPTGVGK
Sbjct: 4   FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE   ++V  +A
Sbjct: 64  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 123

Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164
              AE+R+++ + G    S++                      RE FR +LR G + D E
Sbjct: 124 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 183

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +++E A++S          G     +NL +LF  V G  + ++ R+ V +    L ++E+
Sbjct: 184 VEVETAESSPTFMRGFSGQGMEEIGVNLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEEA 243

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEG 281
            +L+D D V R+++   E  GI+F+DE DKI +R+ G G     VSREGVQRD+LP+VEG
Sbjct: 244 AKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVEG 303

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L   D   IL + 
Sbjct: 304 STINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILREP 363

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L+ QY  L+ TEG+ L FT+D++  LA +A   N +  +IGARRL T++ER+L+++S
Sbjct: 364 KNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEVS 423

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           FSAS++  +   +DA YVR  +     + D+  +IL
Sbjct: 424 FSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 459


>gi|315125398|ref|YP_004067401.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
 gi|315013911|gb|ADT67249.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
          Length = 442

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV ELD++IIGQ  AK+AVAIALRNRWRR QL  DLR E+ PKNIL++GPTGVG
Sbjct: 3   DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLNEDLRAEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE +  + + +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122

Query: 126 ASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILD L+               S+TR+ FRKKLR+G++ DKEIDI++A    +
Sbjct: 123 AEEAAEERILDVLLPPAKDQYGEVQRDENSSTRQSFRKKLREGQLDDKEIDIDLAQAQPN 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I     PG   +    L  +F   MG  ++ K ++ +++ +  L  +E+ +L++ + +  
Sbjct: 183 IEIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKE 240

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+V+TK+G + TDH
Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIASGAF +S+P+D++PE+QGR P+RV L++L   DF+ ILT+  ++L  Q +EL+KT
Sbjct: 301 MLFIASGAFQMSKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + ++F++D+I+ +A  A  +N    +IGARRL TVMER++E+IS+ AS+    ++VID
Sbjct: 361 EQVAIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV  H+G    + D+  FIL
Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442


>gi|297569001|ref|YP_003690345.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924916|gb|ADH85726.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 506

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/487 (45%), Positives = 316/487 (64%), Gaps = 52/487 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           ++  + +PREIV +LD YIIGQ +AKR+VAIALRNRWRR+Q+P  LRDE+ PKNI+++GP
Sbjct: 21  EMVNSLTPREIVRQLDDYIIGQGEAKRSVAIALRNRWRRRQVPPPLRDEIAPKNIIMIGP 80

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL+++AI +VRE  R +
Sbjct: 81  TGVGKTEIARRLATLAQSPFLKVEASKFTEVGYVGRDVESMIRDLLELAIGMVREEERKK 140

Query: 122 VREQASINAEERILDALV------------------------------------------ 139
           V+E+A + AEERILD LV                                          
Sbjct: 141 VQEKAGVMAEERILDLLVPPPPPRRPGAAGPGGTPAINLAYTPADGFTKPSHDQSAHDPS 200

Query: 140 ------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPGGASVGILNL 192
                    +  +TR+ FR+ LR+G++ ++E++IEV    +  + +    GG      NL
Sbjct: 201 AHDPGAATGSGESTRDKFRRMLREGKLDEREVEIEVEQQQATPMFDVFAAGGMEEMESNL 260

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
            E+F K M   +  K ++ V++    L + E+++LID + V R +I+  E  GI+FLDE 
Sbjct: 261 REMFGK-MFPRKSHKRKLKVREAREILRQSEAEKLIDHERVLRLAIRRTEQAGIIFLDEI 319

Query: 253 DKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           DKI ++  G+  G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+P+
Sbjct: 320 DKIASKGGGSSQGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPS 379

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DL+PE+QGRFP+RV L  L + +F  ILT+ ++ L+ QY  L+ TE I L FT+ +I  L
Sbjct: 380 DLIPELQGRFPIRVELGPLGEEEFYRILTEPQNALLKQYSALLATEDIELTFTDGAIREL 439

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSET 430
           A +A  +NS   +IGARRL T++ER+LE+++F A ++ EK   + A+YV+  +     + 
Sbjct: 440 ARLAAEVNSRTENIGARRLHTMLERLLENLAFEAPEMTEKKFEVTADYVQEQLYGVVKDE 499

Query: 431 DMYHFIL 437
           D+  FIL
Sbjct: 500 DLSRFIL 506


>gi|194014785|ref|ZP_03053402.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus
           ATCC 7061]
 gi|194013811|gb|EDW23376.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus
           ATCC 7061]
          Length = 466

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/462 (44%), Positives = 304/462 (65%), Gaps = 32/462 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E +  +V+E+A
Sbjct: 66  TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEEKMKDVQEEA 125

Query: 127 SINAEERILDALVGKTATSN-------------------------------TREVFRKKL 155
              A +R++  LV     S                                TR+    +L
Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + IEV +    + +     G     +N+ +    +M   + K+ +++V++ 
Sbjct: 186 AMGELEDHYVTIEVEEQQPSMFDMLQGSGMEQMGMNMQDALGNLMPKKK-KRRKLTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI      +   VSREGVQRD+
Sbjct: 245 RKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 305 LPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIEDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ L+ QYK L++TEGI L+F++D+I  +A+VA ++N    +IGARRL T++E+
Sbjct: 365 KILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTILEK 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF A D+   TV I  +YV   +G   +  D+  FIL
Sbjct: 425 LLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466


>gi|189043907|sp|A9KH31|HSLU_COXBN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 447

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 306/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 61  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+G + DKEI++
Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 181 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 237

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV RD   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 238 VDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEGSTVFTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 298 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTE 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 358 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 418 QGESITIDADYVNKQLKKLAEDEDLSRYIL 447


>gi|157692295|ref|YP_001486757.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus pumilus
           SAFR-032]
 gi|167017224|sp|A8FD80|CLPY_BACP2 RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|157681053|gb|ABV62197.1| T01 family HslU component of HslUV peptidase [Bacillus pumilus
           SAFR-032]
          Length = 466

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/462 (44%), Positives = 304/462 (65%), Gaps = 32/462 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E +  +V+E+A
Sbjct: 66  TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEDKMKDVQEEA 125

Query: 127 SINAEERILDALVGKTATSN-------------------------------TREVFRKKL 155
              A +R++  LV     S                                TR+    +L
Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + IEV +    + +     G     +N+ +    +M   + K+ +++V++ 
Sbjct: 186 AMGELEDHYVTIEVEEQQPSMFDMLQGSGMEQMGMNMQDALGNLMPKKK-KRRKLTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI      +   VSREGVQRD+
Sbjct: 245 RKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L  L+  DF 
Sbjct: 305 LPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIEDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ L+ QYK L++TEGI L+F++D+I  +A+VA ++N    +IGARRL T++E+
Sbjct: 365 KILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTILEK 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF A D+   TV I  +YV   +G   +  D+  FIL
Sbjct: 425 LLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466


>gi|332678290|gb|AEE87419.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella
           cf. novicida Fx1]
          Length = 455

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/457 (50%), Positives = 313/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKKIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|153206869|ref|ZP_01945687.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           'MSU Goat Q177']
 gi|161830731|ref|YP_001595964.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           RSA 331]
 gi|165918253|ref|ZP_02218339.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 334]
 gi|62286877|sp|Q83A94|HSLU_COXBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043908|sp|A9N9F8|HSLU_COXBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120576942|gb|EAX33566.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           'MSU Goat Q177']
 gi|161762598|gb|ABX78240.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 331]
 gi|165918113|gb|EDR36717.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii
           RSA 334]
          Length = 447

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 307/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 1   MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 61  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+GE+ DKEI++
Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 181 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 237

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 238 VDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEGSTVFTK 297

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 298 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTE 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 358 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 417

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 418 QGESITIDADYVNKQLKKLAEDEDLSRYIL 447


>gi|296116619|ref|ZP_06835229.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976831|gb|EFG83599.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 438

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/435 (53%), Positives = 323/435 (74%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QLP  LRDE++PKNIL++GPTG G
Sbjct: 5   NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLPEGLRDEVVPKNILMIGPTGCG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++R+ RR +V+ +
Sbjct: 65  KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRDLRRRDVQAK 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE  +LDALVG+ A+++TR  FR+ LR+G++  KE++I V +  S     D+P   
Sbjct: 125 AEMAAENSLLDALVGEGASADTRNKFRRMLRNGDLETKEVEISVTEGPSPSGQADMPNMT 184

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              ++N S++    M     ++ RM+V +    L R+E+D+++D +T+ R+++   +++G
Sbjct: 185 PGTVINFSDMMKGFMNRV-PQRRRMTVAEARAALTREEADKMLDTETLTREAVAHAQDHG 243

Query: 246 IVFLDEFDKIV---ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           IVFLDE DK+    A     G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG
Sbjct: 244 IVFLDEIDKVCARGAEGGARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY  L+ TE + L F
Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELSSLTRQDLRRILTEPEHSLLTQYIALLGTEKVTLRF 363

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++DALA++A ++N  V +IGARRL TV+ER+LE++SF+A+D   ++V I A  V+  
Sbjct: 364 TDDAVDALAELAADINERVENIGARRLATVIERLLEEVSFTATDRAGQSVEITAADVQEK 423

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 424 VAPLARKGDLSRFIL 438


>gi|198284455|ref|YP_002220776.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666220|ref|YP_002427122.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226704514|sp|B7J8H7|HSLU_ACIF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238689973|sp|B5ENS6|HSLU_ACIF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|198248976|gb|ACH84569.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518433|gb|ACK79019.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/440 (49%), Positives = 303/440 (68%), Gaps = 10/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR Q+P  L  E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVQELDKYIIGQSEAKRAVAIALRNRWRRGQVPPPLHQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL + A++++R  R+  +R++
Sbjct: 63  KTEIARRLAQLANAPFIKVEATKFTEVGYVGKDVESIIRDLTETAVDMIRNERQVALRQR 122

Query: 126 ASINAEERILDALVGKTATSN-------TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           A   AEERILD L+     S+       TR+ FRK LR+G++  +EI+IEV+     +  
Sbjct: 123 AEELAEERILDILIPGPRDSSVPRSDEGTRQKFRKMLREGKLDAQEIEIEVSAPKGGVEI 182

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              P G       L E+FS  M  G+    R++V +    L  DE+ +L++ + V   ++
Sbjct: 183 M-APAGMEEMTNQLREMFSN-MAPGKTSTRRVTVSEAQRLLTDDEAAKLVNEEEVRALAL 240

Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + V++ GIVF+DE DK+  R     G  VSREGVQRDLLPLVEGS+VST+YG + TDHIL
Sbjct: 241 ERVQSGGIVFIDEIDKVAVRSGTQQGSDVSREGVQRDLLPLVEGSNVSTRYGVVKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D   IL + E+ L+ QY  L+ ++G
Sbjct: 301 FIASGAFHLSKPSDLIPELQGRLPIRVELEALSAADLVRILQEPENALVRQYGALLASDG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L FT+D +  +A++A  +N  V +IGARRL TVMER+LE+++F A D     + +DA 
Sbjct: 361 LALHFTQDGVQRIAEIAQQVNERVENIGARRLHTVMERLLEEVAFVAPDGSTTALEVDAA 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV   + D   + D+  +IL
Sbjct: 421 YVDSRLKDLAQDEDLSRYIL 440


>gi|208779388|ref|ZP_03246734.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida
           FTG]
 gi|254372953|ref|ZP_04988442.1| hypothetical protein FTCG_00524 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374404|ref|ZP_04989886.1| ATP-dependent protease [Francisella novicida GA99-3548]
 gi|151570680|gb|EDN36334.1| hypothetical protein FTCG_00524 [Francisella novicida GA99-3549]
 gi|151572124|gb|EDN37778.1| ATP-dependent protease [Francisella novicida GA99-3548]
 gi|208745188|gb|EDZ91486.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida
           FTG]
          Length = 455

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|205373366|ref|ZP_03226170.1| ATP-dependent protease ATP-binding subunit [Bacillus coahuilensis
           m4-4]
          Length = 466

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/462 (43%), Positives = 300/462 (64%), Gaps = 30/462 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  +PR+IV  LD+YI+GQQDAKR+VA+ALRNR+RR  L   L++E+ PKNIL++GPTGV
Sbjct: 6   FRLTPRQIVERLDQYIVGQQDAKRSVAVALRNRYRRSLLEDSLKEEIHPKNILMIGPTGV 65

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +   VR 
Sbjct: 66  GKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKEEKIQSVRG 125

Query: 125 QASINAEERILDALVGKTATS-----------------------------NTREVFRKKL 155
           +A  NA +R+++ LV    +                                R +  +KL
Sbjct: 126 RAEDNANKRLIELLVPSKKSQASYKNPFEMIFGNSDSEPKEEPKEDFNLAENRSIVAEKL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           ++GE+ ++ I +EV +    + +     G      N  +  S  M   + KK R++V++ 
Sbjct: 186 KNGELENEYISVEVEEQQPSMFDMLQGSGMEQMGTNFQDALSNFMPKKK-KKRRLTVKEA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+ +LIDMD V ++++   E  GI+F+DE DK+ ++ S +   VSREGVQRD+
Sbjct: 245 RKVLTNEEASKLIDMDEVTQEAVFKAEQAGIIFIDEIDKVASKSSSSNADVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS++ TKYGS+ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L   DF 
Sbjct: 305 LPIVEGSTIVTKYGSVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELQKLTIDDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + +  +  QY+ L+ TEGI ++F++D+I  LA++A  +N    +IGARRL T+ME+
Sbjct: 365 RILVEPDQAISKQYQALLSTEGIQIEFSDDAIHRLAEIAYEVNQETDNIGARRLHTIMEK 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF A D+  + + I   YV   +G    + D+  FIL
Sbjct: 425 LLEDLSFEAPDITMEKIEITPAYVNEKLGKIAKDKDLSQFIL 466


>gi|332286549|ref|YP_004418460.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp.
           T7-7]
 gi|330430502|gb|AEC21836.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp.
           T7-7]
          Length = 443

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 11/442 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIVSELD+ I+GQ  AKR+VA+ALRNRWRRQQ+P  LR+E++PKNIL++GPTGV
Sbjct: 4   TNMTPGEIVSELDKNIVGQDRAKRSVAVALRNRWRRQQVPEPLRNEIVPKNILMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLV++++   R+ +   VR 
Sbjct: 64  GKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLVEISVKQSRDVQMRRVRT 123

Query: 125 QASINAEERILDAL---------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           QA   AE+RILD L               +N R+ FRK+LR+G++ D EI+IEVA  +  
Sbjct: 124 QAEDAAEDRILDVLISPARDAQGEPVREENNARQTFRKRLREGKLDDMEIEIEVAQLAPQ 183

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  +G  +KK  +M+V++ +  L  +E+ R ++ D +  
Sbjct: 184 MEIMAPPGMEEM-TEQLKGMFAG-LGRDKKKPKKMTVKEAFKLLTEEEAGRRVNEDELRT 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++   E  GIVFLDE DKI  R   +G  VSR+GVQRDLLPLVEG++V+TKYG + TDH
Sbjct: 242 SAVSNAEQNGIVFLDEIDKIATRQEHSGGDVSRQGVQRDLLPLVEGTTVNTKYGVVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF +SRP+DL+PE+QGRFP+RV L SL   DF  IL DT+S+L  QY  LM T
Sbjct: 302 ILFIASGAFQMSRPSDLIPELQGRFPIRVELDSLTAQDFVRILCDTDSSLTKQYHALMAT 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L FT++ I+ LA++A  +N    +IGARRL TVME++LED+SF A+     TV +D
Sbjct: 362 EDVALHFTDEGIERLAELAFEVNERTENIGARRLYTVMEKLLEDLSFDATSSSGTTVTVD 421

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 422 AAYVNDKLEETASSQDLARYVL 443


>gi|308271351|emb|CBX27959.1| ATP-dependent hsl protease ATP-binding subunit hslU [uncultured
           Desulfobacterium sp.]
          Length = 457

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/456 (47%), Positives = 304/456 (66%), Gaps = 25/456 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P EIV ELD+YIIGQ  AK++VAIALRNRWRRQQ+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   NLKPSEIVKELDKYIIGQNKAKKSVAIALRNRWRRQQVPDDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L  +PF KVE +KFTE+GYVGR+VE ++RDL+++ +N V+   +++V+E+
Sbjct: 63  KTEIARRLSKLTDSPFNKVEASKFTEVGYVGRDVESMVRDLLELTVNAVKSKEQEDVKEK 122

Query: 126 ASINAEERILDALVGKTAT------------------------SNTREVFRKKLRDGEIS 161
           A I AEER+LD L+ KT                          S TR   R  LR G++ 
Sbjct: 123 AMIIAEERMLDILLPKTNRQEVDNKNESGETGLEPVNAESTDLSATRNKLRDMLRKGKLD 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D+ ID++V++    +       G     +N  ++   +M     KK ++ V +    L  
Sbjct: 183 DRIIDLDVSERQMPVIEVFSNLGMEEMGVNFKDMLGGLMPKN-TKKRKVKVSEAMEILTL 241

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           DES RL+DMD V + +I  VE  GI+F+DE DKIV ++ G+G  VSREGVQRDLLP+VEG
Sbjct: 242 DESQRLVDMDKVVKSAILKVEQSGIIFIDEIDKIVGKNGGSGPDVSREGVQRDLLPIVEG 301

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+++TKYG + TDHILFIASGAFH  +P+DL+PE+QGRFP+RV L++L + +F  IL + 
Sbjct: 302 STITTKYGPVKTDHILFIASGAFHAVKPSDLIPELQGRFPIRVELEALGQKEFVRILKEP 361

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L++QY  ++KTEG+ + F  ++I+ +A +A  +N+   +IGARRL T+ME +LEDI 
Sbjct: 362 KNALLIQYIAMLKTEGVNIVFEPEAIEEIARIAEEVNNHTENIGARRLHTIMECLLEDIL 421

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A D+  K VVIDA  V   + D     D+  +IL
Sbjct: 422 FDAPDMPGKDVVIDANSVSSKLNDIKDNEDLSRYIL 457


>gi|284036544|ref|YP_003386474.1| heat shock protein HslVU, ATPase HslU [Spirosoma linguale DSM 74]
 gi|283815837|gb|ADB37675.1| heat shock protein HslVU, ATPase subunit HslU [Spirosoma linguale
           DSM 74]
          Length = 461

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/460 (45%), Positives = 303/460 (65%), Gaps = 25/460 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L  + +PR+IV+ELD+YIIGQ DAKR VAIALRNRWRR    AD++ E+ P NIL++G 
Sbjct: 3   ELLKDLTPRQIVAELDQYIIGQHDAKRNVAIALRNRWRRMNSAADMQREITPNNILMIGA 62

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA++A APFIKVE +KFTE+GYVGR+VE ++RDLV+ A+N+VR ++++ 
Sbjct: 63  TGVGKTEIARRLAKIADAPFIKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVRAAKKEA 122

Query: 122 VREQASINAEERILDALVGKTA-------------------TSNTREVFRKKLRDGEISD 162
           V+ +A    E+ ILD L+                          TRE FR+K+R GE+ D
Sbjct: 123 VQVKAQQMVEDVILDILIPPVKPTNGHMGFENEKKDADAELNERTRERFREKIRSGEMDD 182

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           ++IDI+V    +            + ++N+ E+   +M   R KK ++S+ +    L+ +
Sbjct: 183 RKIDIDVQQAQTPNIGIMGGAIDDMSMMNIQEMIGGMM-PKRGKKRKVSIAEARKILLEE 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLV 279
           E+ +LIDMD V  ++I+  E+ GI+F+DE DK+ +  SGNG     VSREGVQRDLLP+V
Sbjct: 242 EAAKLIDMDEVKEEAIRKAEDAGIIFIDEIDKVASARSGNGGGGPDVSREGVQRDLLPIV 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYG I+TDHILF+A+GAFHV++P+DL+PE+QGRFP+RV L+SL++ DF  IL 
Sbjct: 302 EGSAVNTKYGVIHTDHILFVAAGAFHVAKPSDLIPELQGRFPIRVELQSLSEDDFYQILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY  ++K E + L F +D++  LA +A  +NS V +IGARRLQTV+  ++ D
Sbjct: 362 EPKNALTKQYVAMLKAESVDLTFQDDALRELARIAFEVNSDVENIGARRLQTVLSHLMND 421

Query: 400 ISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             F   D+      VV+  E V   +       D+  FIL
Sbjct: 422 FMFDIPDVIGANAHVVVTKELVNEKLNGLVKNRDLSQFIL 461


>gi|73667418|ref|YP_303434.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str.
           Jake]
 gi|72394559|gb|AAZ68836.1| Heat shock protein HslU [Ehrlichia canis str. Jake]
          Length = 492

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P++I   LDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G TG
Sbjct: 57  TQELTPQQITQALDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTG 116

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           +GKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E  R  V 
Sbjct: 117 IGKTEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKEKFRKIVE 176

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           ++A   +E  ILDAL+G  A+  T+ +F++KLR+GE  D EI I + ++ + +   DIP 
Sbjct: 177 KKAKALSESMILDALIGPDASEETKTIFQEKLRNGEFEDSEISISIKESKNTMPPIDIPN 236

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G  VGI+N++E+  K++G+ ++ K I+++V++    L+ +ES++L+D D + ++++Q+
Sbjct: 237 IPGNQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKEALQL 296

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIA
Sbjct: 297 ASNDGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIA 355

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +
Sbjct: 356 SGAFHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITI 415

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFT++ +  +A++A  +N  V +IGARRL T++E+++EDIS++A++   KT VID+EYV+
Sbjct: 416 DFTDEGVCTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVK 475

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 476 QKLEDISKQLDLSKFIL 492


>gi|212213472|ref|YP_002304408.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii
           CbuG_Q212]
 gi|212011882|gb|ACJ19263.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella
           burnetii CbuG_Q212]
          Length = 465

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/450 (52%), Positives = 307/450 (68%), Gaps = 20/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGV
Sbjct: 19  MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE    +V+ 
Sbjct: 79  GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
            A   AEER+LDAL+                      S TR++FRKKLR+GE+ DKEI++
Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV+   S       P G    +  L  +    M S R K  R+ V+     L  +E+ +L
Sbjct: 199 EVSAHPS--FEIMGPPGMEEMVSQLQGI-MSSMSSRRSKSRRLKVKDALRILGEEEAAKL 255

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D D +   ++  VE  GIVF+DE DKIV R+   G  VSREGVQRDLLPLVEGS+V TK
Sbjct: 256 VDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEGSTVFTK 315

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L   DF  ILT+ +++L  
Sbjct: 316 YGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALMADDFVRILTEPKASLTE 375

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTE   L FT+D I  LA++A  +N    +IGARRL T+MER+LE++SF A+D 
Sbjct: 376 QYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDK 435

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           Q +++ IDA+YV   +     + D+  +IL
Sbjct: 436 QGESITIDADYVNKQLKKLAEDEDLSRYIL 465


>gi|94500583|ref|ZP_01307114.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65]
 gi|94427373|gb|EAT12352.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65]
          Length = 450

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/447 (49%), Positives = 304/447 (68%), Gaps = 16/447 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IV ELD++I+GQ  AKR+VAIALRNRWRR QLP D R+E+ PKNIL++GPTGVG
Sbjct: 5   NLTPAQIVKELDKHIVGQSVAKRSVAIALRNRWRRMQLPEDFRNEITPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ APFIKVE TKFTE+GYVGR+VE IIRDLV+    ++RE     V E+
Sbjct: 65  KTEIARRLAKLSNAPFIKVEATKFTEVGYVGRDVETIIRDLVETGFKLLREQEMANVSER 124

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   A ER+LDAL+                S+TR +FRKK+ +GE+ DKEI+I+VA    
Sbjct: 125 AKEAAVERVLDALLRPARNSYETEADKPEDSSTRILFRKKVLNGEMDDKEIEIDVAQPQV 184

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG        +  +FS + GS +  K +M+V+     +  +E+  ++++D + 
Sbjct: 185 GVEIMAPPGM-EDMTNQIQSMFSNLGGSNKTNKRKMNVKDALKMIQDEEAHNMLNIDELK 243

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             ++++VE  GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG SVSTKYG + TD
Sbjct: 244 SQAVELVEQNGIVFIDEIDKVAKRQEAGGGDVSREGVQRDLLPLIEGCSVSTKYGMLKTD 303

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+S+P+DL+PE+QGR P+RV L++L   DF+ ILT+  ++L  QYK L+ 
Sbjct: 304 HILFIASGAFHLSKPSDLIPELQGRLPIRVELEALTPDDFKRILTEPSASLTEQYKALLG 363

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK---- 410
           TEG+ ++FTED I+ LA  A  +N T  +IGARRL T+MER+LE +SF A  L  +    
Sbjct: 364 TEGLSVEFTEDGIERLAQTAFKVNETTENIGARRLHTMMERLLEKVSFDAESLATQYSQT 423

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + I+A +V  H+GD   + D+  FIL
Sbjct: 424 PLQINAAFVDEHLGDIAQDEDLSRFIL 450


>gi|27804891|gb|AAO22925.1| HslU-like protein [Myxococcus xanthus]
          Length = 465

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/456 (47%), Positives = 310/456 (67%), Gaps = 25/456 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI+++GPTGVGK
Sbjct: 10  FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 69

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE   ++V  +A
Sbjct: 70  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 129

Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164
              AE+R+++ + G    S++                      RE FR +LR G + D E
Sbjct: 130 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 189

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +++E A++S          G     +NL +LF  V G  + ++ R+ V +    L ++++
Sbjct: 190 VEVETAESSPTFMRGFSGQGMEEIGVNLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEKA 249

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEG 281
            +L+D D V R+++   E  GI+F+DE DKI +R+ G G     VSREGVQRD+LP+VEG
Sbjct: 250 AKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVEG 309

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L   D   IL + 
Sbjct: 310 STINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILREP 369

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L+ QY  L+ TEG+ L FT+D++  LA +A   N +  +IGARRL T++ER+L+++S
Sbjct: 370 KNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEVS 429

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           FSAS++  +   +DA YVR  +     + D+  +IL
Sbjct: 430 FSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 465


>gi|62260988|gb|AAX77951.1| unknown protein [synthetic construct]
          Length = 490

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/459 (50%), Positives = 313/459 (68%), Gaps = 24/459 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +++T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++G
Sbjct: 25  LEMTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIG 84

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  ++
Sbjct: 85  PTGVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKE 144

Query: 121 EVREQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDG 158
           +V E+A+  AE+RILD L+    TS                       TRE+FRKK+++G
Sbjct: 145 KVTEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNG 204

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E+ DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++     
Sbjct: 205 ELDDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKL 262

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
              +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPL
Sbjct: 263 AQDEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPL 322

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL
Sbjct: 323 VEGSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRIL 382

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE
Sbjct: 383 REPDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLE 442

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ISF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 443 KISFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 481


>gi|289185458|gb|ADC91866.1| heat shock protein, ATPase subunit [Paenibacillus popilliae]
          Length = 465

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/461 (44%), Positives = 306/461 (66%), Gaps = 31/461 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++PR+IV+ELD+YI+GQ+ AKRAVA+ALRNR+RR  L   ++DE++PKNIL++GPTGVGK
Sbjct: 6   WTPRQIVTELDKYIVGQKMAKRAVAVALRNRYRRSLLDESIQDEIVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R ++V+++A
Sbjct: 66  TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDKA 125

Query: 127 SINAEERILDALVGKTATS------------------------------NTREVFRKKLR 156
              A ERI++ L   +  +                                +   R  L 
Sbjct: 126 EEMANERIVEILAPSSKENKSQRNPFEMLFGQNQSHAQQAEPEPEPVLQEKQRKVRFDLL 185

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + ++ I+I+V D + +I +F    G     +N+ E+F   +   R KK ++++++  
Sbjct: 186 SGNLENETIEIDVEDAAPNILDFLSGPGNEQIGMNMQEMFGS-LIPKRMKKRKLTIKEAR 244

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+ +LIDMD V ++SI   E  GI+F+DE DKI +   G+G  VSREGVQRD+L
Sbjct: 245 KVLTQEEAAKLIDMDDVIQESIHRAEQSGIIFIDEIDKIASSGRGSGPDVSREGVQRDIL 304

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS++ TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ SD   
Sbjct: 305 PIVEGSTIITKYGPVKTDYVLFIAAGAFHIAKPSDLIPELQGRFPIRVELTSLSLSDXVS 364

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ +  QY EL+KTE I ++FT+++I  +A  A ++N    +IGARRLQT+ME++
Sbjct: 365 ILTEPKNAITKQYVELLKTENIQIEFTDEAIREIARTAADVNQNTENIGARRLQTIMEKL 424

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A DL      I  EYVR  + D     D+  +IL
Sbjct: 425 LEDLSFEAPDLTLDQFRITPEYVREKLSDIAQNRDLSQYIL 465


>gi|186474840|ref|YP_001856310.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           phymatum STM815]
 gi|238691321|sp|B2JJX7|HSLU_BURP8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|184191299|gb|ACC69264.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           phymatum STM815]
          Length = 447

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/446 (47%), Positives = 310/446 (69%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQNRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   ++R +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKMRTKA 123

Query: 127 SINAEERILDALVGK---------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              AE+RILD L+                   ++ TR+ FRK+LR+G + DKEI++++  
Sbjct: 124 EDLAEDRILDILLPGARTVGFGSGTSEASGDESNTTRQTFRKRLREGALDDKEIELDIEM 183

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +     PG        +  +F+  +G G+K + ++ V++    L  +E+ ++++ +
Sbjct: 184 QAPAMDIMGPPGM-EDMTEQIRSMFAN-LGGGKKTRRKVKVKEALKLLTDEEASKMLNDE 241

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   ++Q VE  GIVFLDE DKI +R    G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 EVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   K+
Sbjct: 362 LLATEDVHLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHTGKS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+IDA YV   + D   + D+  ++L
Sbjct: 422 VLIDAAYVDRALNDVAQDEDLSRYVL 447


>gi|317401423|gb|EFV82056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Achromobacter
           xylosoxidans C54]
          Length = 444

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/442 (51%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IEVA T+  
Sbjct: 125 AEDAAEDRILDALVPPPRGSSGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQTAPH 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 AAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FTE+ +  LA++A  +N T  +IGARRL TVME++L+++SF A+   +KTV ID
Sbjct: 363 EDVQLEFTEEGVRRLAELAYEVNETTENIGARRLYTVMEKLLDELSFDATSSTDKTVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444


>gi|118497588|ref|YP_898638.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. novicida U112]
 gi|195536286|ref|ZP_03079293.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. novicida FTE]
 gi|166221481|sp|A0Q6L9|HSLU_FRATN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|118423494|gb|ABK89884.1| ATP-dependent protease HslVU, ATPase subunit [Francisella novicida
           U112]
 gi|194372763|gb|EDX27474.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. novicida FTE]
          Length = 455

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/457 (50%), Positives = 311/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK++ GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQKGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|297617133|ref|YP_003702292.1| heat shock protein HslVU, ATPase HslU [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144970|gb|ADI01727.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 467

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/466 (45%), Positives = 306/466 (65%), Gaps = 35/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR IV ELDRYI+GQ+ AK+AVAIALRNR+RR++LPA++ +E+ PKNI+++GPTGVG
Sbjct: 3   NLTPRAIVEELDRYIVGQEAAKKAVAIALRNRYRRKKLPAEIGEEIYPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+GYVGR+V+ +IRDLV+ ++ ++++ +  EV  +
Sbjct: 63  KTEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVDSMIRDLVETSVQMIKKEKMAEVENK 122

Query: 126 ASINAEERILDALVGKTAT----------------------------------SNTREVF 151
           A   AEERI+D ++                                          RE+ 
Sbjct: 123 ARKLAEERIVDYMLPLPKKRGSQVVNPLEFLLGRTSSETDNQDSDIGPGYEDIRRRREIL 182

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             K+   E+ D+ I+IEV +            G     +NL ++   +    + KK +++
Sbjct: 183 STKIARMELEDELIEIEVEEKPVSFFEVFSGAGVEEMGINLQDMLGSLAPKSK-KKRKVT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L  +ES +LIDMD V R+++   EN GI+FLDE DKI  R++G+G  VSR GV
Sbjct: 242 VAEARRILTNEESQKLIDMDEVQREAVYRAENSGIIFLDEIDKIAGRETGHGPDVSRGGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL  
Sbjct: 302 QRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHITKPSDLIPELQGRFPIRVELTSLTV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DFR ILT+ +++LI QY  L+ TEG+ + FT ++ID +A V+  +N++  +IGARRL T
Sbjct: 362 EDFRRILTEPDNSLIKQYVALLSTEGVDISFTPEAIDYIAQVSYEVNASTENIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E+VLED+ F AS++  +TVVID  YV   +G    + D+  +IL
Sbjct: 422 ILEKVLEDLLFEASEMAGQTVVIDKAYVEARLGPIIKDEDLSRYIL 467


>gi|218778264|ref|YP_002429582.1| ATP-dependent protease ATP-binding subunit HslU [Desulfatibacillum
           alkenivorans AK-01]
 gi|226704520|sp|B8FH26|HSLU_DESAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218759648|gb|ACL02114.1| heat shock protein HslVU, ATPase subunit HslU [Desulfatibacillum
           alkenivorans AK-01]
          Length = 457

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/456 (49%), Positives = 300/456 (65%), Gaps = 25/456 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  PREIV ELD+YIIGQ  AKR VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG
Sbjct: 3   DLKPREIVQELDKYIIGQDHAKRFVAIALRNRWRRRQVPQDLRDEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA  PF+KVE TKFTE+GYVGR+VE +IRDLV+V +N+VRE   DEV   
Sbjct: 63  KTEISRRLAKLADVPFLKVEATKFTEVGYVGRDVESMIRDLVEVTVNMVREKEEDEVALP 122

Query: 126 ASINAEERILDAL-----------------------VGKTATSNTREVFRKKLRDGEISD 162
           A   AEERILD L                        G +   +TRE  RK L  G+  D
Sbjct: 123 AMKAAEERILDILLPPRRETQPFADAEGETTLEIVTRGDSNQDSTREKLRKMLHSGKFDD 182

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +D+E+ + ++ +       G      N  ++   +M     KK ++ V +    L + 
Sbjct: 183 RYVDLEINERNTPVVEIFSNMGMEEVGFNFKDMLGGLMPKN-TKKRKVKVSEAMEILTQQ 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEG 281
           E+  LIDM+ V + ++  VE  GI+FLDE DKI      G G  VSREGVQRDLLP+VEG
Sbjct: 242 EAQGLIDMEKVVKKALSRVEESGIIFLDEIDKIAVGGGKGQGPDVSREGVQRDLLPIVEG 301

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++V+TKYG + TDHILFIASGAFH+++P+DL PE+QGRFP+RV L SL + DF  ILT+ 
Sbjct: 302 TTVNTKYGMVKTDHILFIASGAFHMTKPSDLTPELQGRFPIRVELDSLTEHDFMRILTEP 361

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ ++LQY+EL+KTEG+ L FT+DS+  +A +A  +N    +IGARRL TVME +LEDI 
Sbjct: 362 KNAIMLQYQELLKTEGVELVFTQDSVAEIASIAKEVNDRTENIGARRLHTVMECLLEDIL 421

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + A ++ EK + I AE VR  +     + D+  +IL
Sbjct: 422 YDAPEVPEKKITIGAEMVRAKLESIKEDEDLSRYIL 457


>gi|323701843|ref|ZP_08113513.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533147|gb|EGB23016.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           nigrificans DSM 574]
          Length = 464

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/463 (44%), Positives = 319/463 (68%), Gaps = 32/463 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+YI+GQ  AK+AVA+ALRNR+RR +LP DL DE++PKNIL++GPTGVG
Sbjct: 3   DLTPRQIVAELDKYIVGQNKAKKAVAVALRNRYRRSKLPEDLIDEVVPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+
Sbjct: 63  KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKMEEVEER 122

Query: 126 ASINAEERILDALVGKTATSNT-------------------------------REVFRKK 154
           A   A+ERI++ L       +                                RE  R+K
Sbjct: 123 ARRMADERIIEILAPMPNRPSQTKNPLEMLFGGGQQTQDDQAYEQQNSRIKFERETLREK 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L  GE+ ++ ++IEV DT++ +       G     +N+ ++   +    + +K ++SV++
Sbjct: 183 LERGELENEYLEIEVEDTNTPMFEVFTNSGVEEMGVNMQDVLGSIFPRKK-RKRKVSVRE 241

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L   E+ +LIDMD +  ++++  E +GI+FLDE DKI AR+   G  VSR GVQRD
Sbjct: 242 ARKILTSQEAQKLIDMDELTAEAVKRAEEHGIIFLDEIDKIAAREGSAGPDVSRGGVQRD 301

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++SDF
Sbjct: 302 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRSDF 361

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           + IL +  ++LI QY EL++TEG+ ++F+++S++ +AD+A  +N    +IGARRL T++E
Sbjct: 362 QQILVEPRNSLIKQYTELLRTEGVNIEFSKNSLEEIADIAYTVNEQTENIGARRLHTILE 421

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LEDISF A +L+ +++ ID+ YV+  + D  +  D+  +IL
Sbjct: 422 KLLEDISFEAPELKGQSLTIDSAYVQEKLKDVVANRDLSRYIL 464


>gi|217969220|ref|YP_002354454.1| ATP-dependent protease ATP-binding subunit HslU [Thauera sp. MZ1T]
 gi|217506547|gb|ACK53558.1| heat shock protein HslVU, ATPase subunit HslU [Thauera sp. MZ1T]
          Length = 445

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/446 (51%), Positives = 310/446 (69%), Gaps = 15/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P EIVSELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGV
Sbjct: 2   TQMTPPEIVSELDKHIVGQDKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+   RE     VR+
Sbjct: 62  GKTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLMEIAVKDGRERAMKSVRD 121

Query: 125 QASINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   AE+R+LDAL+                 S+TR+ FRKKLR+GE+ DKEI+IEVA  
Sbjct: 122 RALDAAEDRVLDALLPPARPVGFNAEPEPAQDSSTRQKFRKKLREGELDDKEIEIEVAAP 181

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S     F  PG   +    +  +F   +G G+KK+ ++ +++    L  +E+ RLI+ + 
Sbjct: 182 SMQAEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKQRKLQIREAMKLLADEEAARLINDEE 239

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V  ++++ VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG+++STKYG I 
Sbjct: 240 VKLEAVRAVEQNGIVFLDEVDKIAARSDVQGADVSRQGVQRDLLPLVEGTTISTKYGMIK 299

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T++ L  QY+ L
Sbjct: 300 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFARILTSTDACLTRQYEAL 359

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKT 411
           + T+G+ L+F +D I  LA++A  +N    +IGARRL TVME++LE++SF A     E+T
Sbjct: 360 LATDGVKLEFADDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGRSSAEQT 419

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VV+DA YV   +       D+  ++L
Sbjct: 420 VVVDAAYVDSRLVMLAQREDLARYVL 445


>gi|94986778|ref|YP_594711.1| ATP-dependent protease ATP-binding subunit HslU [Lawsonia
           intracellularis PHE/MN1-00]
 gi|166221590|sp|Q1MRI6|HSLU_LAWIP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|94731027|emb|CAJ54390.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 433

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/433 (48%), Positives = 308/433 (71%), Gaps = 3/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+YIIGQ+ AKR VAIA+RNRWRRQQL   LRDE+ P+NI+++GPTGVG
Sbjct: 3   ELTPREIVVELDKYIIGQEQAKRMVAIAVRNRWRRQQLQEGLRDEVAPRNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE +IRDL++++IN+VR+   ++VRE+
Sbjct: 63  KTEIARRLAKLCHAPFIKVEATKYTEVGYVGRDVESMIRDLMEISINLVRKEEAEKVRER 122

Query: 126 ASINAEERILDALVGKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           A + AEER+LD L+      + TRE  R   R G + D+E+DIEV + +  I   ++PG 
Sbjct: 123 AEVLAEERLLDLLLPIGENRDATREKLRSLFRQGHLKDREVDIEVQEQTQPIGILNVPGM 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G   + + FS++    +  + +M V   +  L+ +ES+RL+D D +   + + VE  
Sbjct: 183 EQIG-NQMKDAFSRIFPQ-KTHRRKMKVSAAWEHLVGEESNRLVDNDKLTDLARERVEQM 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ +        +SREGVQRDLLP+VEGS+V+TKYG I TDHILFIA+GAF
Sbjct: 241 GIVFIDEIDKLASASQHRSSDISREGVQRDLLPIVEGSAVNTKYGLIKTDHILFIAAGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+S+P+DL+PE+QGRFP+R  L++L K++F  ILT+ ++ L  QY+ L++TEG+ + FT+
Sbjct: 301 HLSKPSDLIPELQGRFPLRAELEALGKNEFYRILTEPDNALTRQYEALLETEGVKIVFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D +  ++  A ++N+   +IGARRL T+ME++L DISF A +    T+ +  EYV  ++ 
Sbjct: 361 DGLKEISAFAEDVNTQTENIGARRLHTIMEKILADISFDAPEKFGTTLEVTKEYVVSYLE 420

Query: 425 DFPSETDMYHFIL 437
           D  + T++  FIL
Sbjct: 421 DIRANTELSRFIL 433


>gi|56476921|ref|YP_158510.1| ATP-dependent protease ATP-binding subunit HslU [Aromatoleum
           aromaticum EbN1]
 gi|62286724|sp|Q5P503|HSLU_AZOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56312964|emb|CAI07609.1| Heat shock protein chaperone [Aromatoleum aromaticum EbN1]
          Length = 442

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 12/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P EIVSELD++I+GQ  AK+AVAIALRNRWRR Q+   LR E+ PKNIL++GPTGV
Sbjct: 2   TQMTPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL ++A+   RE     VR+
Sbjct: 62  GKTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLAEIAVKDGRERAMKTVRD 121

Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+R+LDAL            +   S+TR+ FRK+LR+GE+ DKEIDIEVA  + 
Sbjct: 122 RALDAAEDRVLDALLPAARPVGLNEPEPVDSSTRQKFRKRLREGELDDKEIDIEVAAQAM 181

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               F  PG   +    +  +F   +G G+KK  +M + +    L  +E+ RLI+ + V 
Sbjct: 182 TAEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKVRKMKIGEALKALTDEEAARLINDEEVK 239

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            ++++ VE  GIVFLDE DK+ +R  G G  VSR+GVQRDLLPLVEG+++STKYG I TD
Sbjct: 240 AEAVRAVEQNGIVFLDEIDKVASRSEGQGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 299

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAFH+++P+DL+PE+QGR P+RV L+SL+  DF+ ILT T++ L+ QY+ L+ 
Sbjct: 300 HILFIASGAFHLAKPSDLIPELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLA 359

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           T+G+ L+FT+D I  LA++A  +N    +IGARRL TVME++LE+ISF A  +    +++
Sbjct: 360 TDGVTLEFTDDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRIGLDKLLV 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +       D+  ++L
Sbjct: 420 DAPYVDARLEILAQREDLARYVL 442


>gi|323700573|ref|ZP_08112485.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp.
           ND132]
 gi|323460505|gb|EGB16370.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans ND132]
          Length = 461

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/460 (47%), Positives = 307/460 (66%), Gaps = 29/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELD+YIIGQ+ AKR VAIA+RNRWRRQQL  +LRDE+ PKNI+L+GPTGVG
Sbjct: 3   NLTPREIVSELDKYIIGQEAAKRMVAIAMRNRWRRQQLDPELRDEIAPKNIILMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA  PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+   ++VR +
Sbjct: 63  KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122

Query: 126 ASINAEERILDALVGKTATSN-------------------------TREVFRKKLRDGEI 160
           A  NAEER+LD L+                                TRE FR+  R G++
Sbjct: 123 AEKNAEERLLDLLLPGKKPQPGGAMGFFQGGQDGAVEKIEPPREDATREKFRQMFRAGQL 182

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            ++E++++V   S          G      NL   FS  M  G++K  +M ++  Y  L+
Sbjct: 183 DEREVEMQVTVQSGASVEIMAIPGMEEMGSNLQNAFSN-MFPGKRKARKMKIKDAYQLLI 241

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLP 277
            +E+D+LID DTV+  + + VE  GI+F+DE DKI +R     G    VSREGVQRDLLP
Sbjct: 242 DEEADKLIDPDTVNELARERVEQQGILFIDEMDKIASRHDQMGGGSADVSREGVQRDLLP 301

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R  L SL+K +F  I
Sbjct: 302 IVEGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREELASLHKEEFYKI 361

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+  + L +QYK L++TEG+ +D+T ++++ +A +A  +N    +IGARRL T+ME++L
Sbjct: 362 LTEPRNALTVQYKALLQTEGVTVDYTREALEEIAVMAEKINEETENIGARRLYTIMEKIL 421

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++S+ A D     VVID +YV   +G+   + D+  +IL
Sbjct: 422 ANLSYEAPDKSGSQVVIDRDYVVAQLGEVIEDRDLSRYIL 461


>gi|206890762|ref|YP_002249198.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|254802320|sp|B5YG00|HSLU_THEYD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206742700|gb|ACI21757.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 445

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/445 (49%), Positives = 317/445 (71%), Gaps = 15/445 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV ELD++IIGQ+ AK+AVAIALRNR+RRQ LP +LRDE++PKNIL++GPTGVG
Sbjct: 3   NLTPKKIVEELDKFIIGQESAKKAVAIALRNRFRRQLLPKELRDEILPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE +KFTE+GYVGR+VE IIRDL +VA+N+V++   + V+E+
Sbjct: 63  KTEIARRLARLVNAPFVKVEASKFTEVGYVGRDVESIIRDLTEVAMNMVKQEHTERVQEK 122

Query: 126 ASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           A   AEER+LD L+ +             T    TRE  RK+LR+G + ++ I+I++ + 
Sbjct: 123 ARQLAEERVLDILLPQPRYTRDMNEAEERTRYKETREKLRKQLREGILDERYIEIDLKEK 182

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                         +  +NL E+    +   + K+ ++ + +      ++E+++LIDM+ 
Sbjct: 183 VVPFGIISNVAMEEIE-INLKEMLGSFL-PEKVKRKKVKIPEAIQLFTQEEANKLIDMEK 240

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V +++I+ VE  GIVF+DE DKI +R S  G  VSREGVQRDLLP+VEGS+V+TKYG + 
Sbjct: 241 VTKEAIERVEQTGIVFIDEIDKIASRGSSYGPDVSREGVQRDLLPIVEGSTVTTKYGPVK 300

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL K +F  ILT+ ++ LI QY  L
Sbjct: 301 TDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELNSLGKEEFVRILTEPDNALIKQYIAL 360

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TE + L+FT+D I+ +AD++  +N    +IGARRL TVME++LEDISF+AS+L+ + +
Sbjct: 361 LATEDVYLEFTQDGIEEIADISQQVNEKTENIGARRLHTVMEKLLEDISFNASELKGQKI 420

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            IDA++VR  + +     D+  +IL
Sbjct: 421 TIDAKFVREKLSEIIKSEDLSRYIL 445


>gi|317484401|ref|ZP_07943317.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6]
 gi|316924353|gb|EFV45523.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6]
          Length = 433

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/433 (48%), Positives = 306/433 (70%), Gaps = 3/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+YIIGQ  AKR VAIA+RNRWRRQ+L A+LR+E+ P+NI+++GPTGVG
Sbjct: 3   ELTPREIVAELDKYIIGQNQAKRMVAIAVRNRWRRQRLAAELRNEVAPRNIIMMGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE +IRDL+++ IN+VR    ++V+ +
Sbjct: 63  KTEIARRLAKLCSAPFIKVEATKYTEVGYVGRDVESMIRDLMEIGINLVRAEEAEKVKGR 122

Query: 126 ASINAEERILDALVGK-TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           A   AEER+LD L+       NTRE  R+  R G + D+E++ EV + S  I    +PG 
Sbjct: 123 AEAAAEERLLDLLLPSGDGRENTREKLRELFRQGFLDDREVEFEVKEQSQPIGMLGVPGM 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +G   +   FSK+    +  + +M V   +  L+ DES +L+D D +   + + VE  
Sbjct: 183 EQLG-DQMKGAFSKLFPQ-KTHRKKMKVGAAWRHLIEDESSKLVDEDKITDLARERVEQM 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+ +        +SREGVQRDLLP+VEGS+V+TKYG +NTDHILFIA+GAF
Sbjct: 241 GIVFIDEIDKLASGSQQRSADISREGVQRDLLPIVEGSAVNTKYGLVNTDHILFIAAGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H+S+P+DL PE+QGRFP+R  L++L K +F  ILT+  ++L  QY+ +++TEG+ ++FT+
Sbjct: 301 HLSKPSDLFPELQGRFPLRAELEALGKEEFYRILTEPHNSLTRQYEAMLETEGVRIEFTD 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D +  +A  A ++N+   +IGARRL T+ME++L DISF AS+ +  T+VID E+V   + 
Sbjct: 361 DGLREIAAFAEDVNTRTENIGARRLHTIMEKILADISFDASEKRGSTLVIDREHVVAQLA 420

Query: 425 DFPSETDMYHFIL 437
           D  ++ ++  FIL
Sbjct: 421 DVRADAELSRFIL 433


>gi|328553489|gb|AEB23981.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           amyloliquefaciens TA208]
 gi|328911719|gb|AEB63315.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus amyloliquefaciens LL3]
          Length = 467

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/463 (43%), Positives = 300/463 (64%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S  +   +KK+ +M+V++ 
Sbjct: 186 ALGELEDHYVSVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSN-LVPKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEAGKLIDMDEVSQEAVLRAEEGGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 425 RLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|308173578|ref|YP_003920283.1| two-component ATP-dependent protease [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606442|emb|CBI42813.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus amyloliquefaciens DSM 7]
          Length = 467

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/463 (43%), Positives = 300/463 (64%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S  +   +KK+ +M+V++ 
Sbjct: 186 ALGELEDHYVSVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSN-LVPKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEASKLIDMDEVSQEAVLRAEEGGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 425 RLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|328675857|gb|AEB28532.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella
           cf. novicida 3523]
          Length = 455

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/457 (50%), Positives = 310/457 (67%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  + +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+     S                       TRE+FRKK+++GE+
Sbjct: 121 TEKAAKLAEDRILDVLIPPARASESKVGFANEPAEDAVTKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +LI+ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLINEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A++A  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYRVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L +K + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELADKNINITTDYVNQKLGNLVKNKDLTQYIL 455


>gi|116747516|ref|YP_844203.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696580|gb|ABK15768.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophobacter
           fumaroxidans MPOB]
          Length = 466

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/463 (47%), Positives = 310/463 (66%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV ELD+YIIGQ+DAKR VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVGK
Sbjct: 5   LTPAEIVQELDKYIIGQRDAKRMVAIALRNRWRRQQVPEHLRDEIAPKNIIMIGPTGVGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA +PF+K+E +KFTE+GYVGR+VE +IRDL ++A+++VR    + V+ +A
Sbjct: 65  TEIARRLARLAQSPFLKIEASKFTEVGYVGRDVESMIRDLSELAVSMVRTEEMEAVKIKA 124

Query: 127 SINAEERILDALVGKTATSN-------------------------------TREVFRKKL 155
              AEE++LD L+                                      TRE  RK L
Sbjct: 125 EELAEEKLLDILLPPKRQQESREQELPVPVEPQEAREPREAAREEAVQADSTREKLRKLL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R G + D+ ++++V D +  +       G      NL ++   ++   R K+ ++ + + 
Sbjct: 185 RKGALDDRYVELDVPDRNFPMVEIFAGTGMEDMDYNLRDMLGSMLPR-RTKRRKVKIPEA 243

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRD 274
              L+++ES RLIDMD V + +I+ VE+ GI+FLDE DKI  R+SG  G  VSREGVQRD
Sbjct: 244 REILVQEESQRLIDMDKVIKSAIERVEHSGIIFLDEIDKIAGRESGGRGPDVSREGVQRD 303

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEGS+V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL K DF
Sbjct: 304 LLPIVEGSTVTTKYGMVKTDHILFIASGAFHISKPSDLIPELQGRFPIRVELASLTKEDF 363

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + E+ LI+QYK L+ TE + L F +++I+ +A +A  +N+   +IGARRL T+ME
Sbjct: 364 VRILKEPENALIVQYKSLLATEEVELTFDDEAIEEIAGLAFQVNARTENIGARRLHTIME 423

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++L DISF+A DL+ + + I  +Y++  + D   + D+  +IL
Sbjct: 424 KLLSDISFNAPDLKGQKIPITRQYIQETLSDIIKDEDLSRYIL 466


>gi|119896715|ref|YP_931928.1| ATP-dependent protease ATP-binding subunit HslU [Azoarcus sp. BH72]
 gi|166221459|sp|A1K2I6|HSLU_AZOSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|119669128|emb|CAL93041.1| ATP-dependent Hsl protease ATP-binding subunit [Azoarcus sp. BH72]
          Length = 443

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 304/444 (68%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P EIVSELD++I+GQ  AK+AVAIALRNRWRR ++   LR E+ PKNIL++GPTGV
Sbjct: 2   TQMTPPEIVSELDKHIVGQARAKKAVAIALRNRWRRARIDEPLRSEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDLV++AI   RE     VR+
Sbjct: 62  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLVEIAIKDGRERAMRVVRD 121

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+R+LD L+            +   S TR+ FRKKLR+GE+ DKE++IEVA   
Sbjct: 122 RALDAAEDRVLDVLLPPARPVGFSEPAQPQDSATRQKFRKKLREGELDDKEVEIEVASAP 181

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                F  PG   +    +  +F   +G+ RKK  ++ +++    L  +E+ RLI+ + V
Sbjct: 182 MQAEIFAPPGMEEL-TQQIQGMFQN-LGNSRKKLRKLPIREALKLLADEEAARLINDEEV 239

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++++ VE  GIVFLDE DKI AR   +G  VSR+GVQRDLLPLVEG+++STKYG I T
Sbjct: 240 KTEALRAVEQNGIVFLDEVDKIAARADAHGADVSRQGVQRDLLPLVEGTTISTKYGMIKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+  DF  ILT T++ L  QY+ L+
Sbjct: 300 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFERILTSTDACLTRQYEALL 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            T+G+ L FT + I  LA++A  +N    +IGARRL TVME++LE++SF A  +    + 
Sbjct: 360 ATDGVTLSFTPEGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGKVGVDKLT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +DA YV   +       D+  ++L
Sbjct: 420 VDAAYVDARLEVLAQREDLARYVL 443


>gi|317050675|ref|YP_004111791.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum
           indicum S5]
 gi|316945759|gb|ADU65235.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum
           indicum S5]
          Length = 441

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 213/440 (48%), Positives = 304/440 (69%), Gaps = 9/440 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV+ELD+YIIGQ +AK+AVAIALRNRWRRQ+L + LR+E+ PKNI+++GPTGVG
Sbjct: 3   QLTPSQIVAELDKYIIGQTEAKKAVAIALRNRWRRQRLDSFLREEISPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PFIKVE +KFTE+GYVGR+VE IIRDL + ++ +V++      ++Q
Sbjct: 63  KTEIARRLAKLTNSPFIKVEASKFTEVGYVGRDVESIIRDLTEASVKMVKDELVKRYQDQ 122

Query: 126 ASINAEERILDALVGKTATSN---TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           A   A ER+LD ++  + + N   TR+ FRKKL +GE  DKEI+I++      +    +P
Sbjct: 123 AQEAAVERVLDTIIPPSESPNYQDTRQKFRKKLLEGEFDDKEIEIDITMPPPRVEIMGMP 182

Query: 183 G---GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G   G       L ++F  +    R+KK +  V+     +  +E+ +L+D + V+  +++
Sbjct: 183 GQQPGMEDFTSGLKDMFGGLF-GNRQKKKKTKVRAALRLIQDEEAAKLVDTEEVNTKAVE 241

Query: 240 MVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +VE  GIVFLDE DKI +       G  VSREGVQRD+LP+VEGS+VSTKYG + TDHIL
Sbjct: 242 LVEQSGIVFLDEIDKIASSQEVRKGGADVSREGVQRDILPIVEGSTVSTKYGMVRTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH S+P+DL+PE+QGRFP+RV L SL K DF  IL++  S L+ QY+ L+ TE 
Sbjct: 302 FIAAGAFHFSKPSDLIPELQGRFPIRVELDSLGKDDFVRILSEPRSALVKQYRHLLATEH 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I LDF  ++I+A+A+ +V  N  + +IGARRL TVME++LE++SF A ++   T+ ID  
Sbjct: 362 ITLDFQPEAIEAIAEYSVQANEKMENIGARRLHTVMEKLLEEVSFHAPEMDSMTIAIDRN 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV L +     + D+  +IL
Sbjct: 422 YVDLRLKKLVEDEDLSRYIL 441


>gi|78357057|ref|YP_388506.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123727691|sp|Q30ZT5|HSLU_DESDG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|78219462|gb|ABB38811.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 449

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/447 (49%), Positives = 304/447 (68%), Gaps = 17/447 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD+YIIGQ+ AKR VA+ALRNRWRRQQL   +RDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVSELDKYIIGQEQAKRMVAVALRNRWRRQQLEPAIRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL+ +PF+KVE TKFTE+GYVGR+VE +IRDL+++++N+VRE  RD V+ +A
Sbjct: 64  TEIARRLARLSSSPFLKVEATKFTEVGYVGRDVESMIRDLMEISVNLVREEERDSVKTRA 123

Query: 127 SINAEERILDALVGKTAT---------------SNTREVFRKKLRDGEISDKEIDIEVAD 171
              AEER+LD L+  +                  NTR   R   R+G +  +E+++EV  
Sbjct: 124 EAAAEERLLDLLLPSSPAVNTSFDTPQTPAGGAENTRNKLRTLWREGRLDHREVEMEVEM 183

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S    +     G         ++FSK     R K+ RM V   Y  L+++ES+RLID +
Sbjct: 184 QSGPQMDVMTMPGMEDIGSQFKDMFSKAFPPKR-KRRRMKVGDAYAILLQEESERLIDHE 242

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V   + +  E  GI+FLDE DKI +   G     +SREGVQRDLLP+VEGS+V+TKYG 
Sbjct: 243 KVIELARERAEQTGIIFLDEIDKIASSQQGGKTADISREGVQRDLLPIVEGSAVNTKYGI 302

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I+TDHILFI +GAFH S+P+DL+PE+QGRFP+RV L +L   +F  ILT+ ++ L +QYK
Sbjct: 303 IHTDHILFIGAGAFHYSKPSDLIPELQGRFPLRVELTALGSKEFLRILTEPKNALTVQYK 362

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TEG+ +++TED+++A+AD A   N    +IGARRL T+ME++L D+SF A D   +
Sbjct: 363 ALLATEGVQIEYTEDALEAVADFAQEANQETENIGARRLYTIMEKILADLSFEAPDKSGE 422

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +VID EYVR H+ D  +  D+  +IL
Sbjct: 423 RIVIDREYVRQHLADITANRDLTRYIL 449


>gi|237747301|ref|ZP_04577781.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229378652|gb|EEO28743.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 443

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/446 (50%), Positives = 309/446 (69%), Gaps = 16/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD++++GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPQEIVVELDKHVVGQSKAKRAVAVALRNRWRRQQVSEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I   RE    +VR 
Sbjct: 61  GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTREVEMKKVRS 120

Query: 125 QASINAEERILDALVGKTAT-------------SNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+R+L+ L+                   NTR+VFRKKLR+G + DKEI+IEVAD
Sbjct: 121 RAVDAAEDRVLNILIPPPRDFGFGSNEQPTSSGDNTRQVFRKKLREGSLDDKEIEIEVAD 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           ++  +     PG   +    +  +FS  +G GRKK  ++ ++     ++ +E+ +LI+ D
Sbjct: 181 SAPHMEIMAPPGMEEM-TEQIKSMFSG-LGGGRKKNRKVKIRDAIKLIIEEEAAKLINED 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + +I  VE  GIVFLDE DKI +R   +G  VSR GVQRDLLPLVEG++V+TKYG I
Sbjct: 239 ELRQKAIANVEQNGIVFLDEIDKIASRSEISGADVSRAGVQRDLLPLVEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +++P+DL+PE+QGRFP+RV L+SL+  DF  ILT TE++LI QYK 
Sbjct: 299 KTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELESLSIEDFEQILTSTEASLISQYKA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TEG+ L+F E++I  LA+++  +N    +IGARRL TVMER+LE+ISF+A +     
Sbjct: 359 LLATEGMQLEFNEEAIRRLAEISYTVNERTENIGARRLYTVMERLLEEISFTAVNYHGVQ 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
             ID  YV   +    +  D+  ++L
Sbjct: 419 -TIDKNYVNERLEALSANEDLSRYVL 443


>gi|254369290|ref|ZP_04985302.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122240|gb|EDO66380.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 455

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/457 (51%), Positives = 312/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA T   I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVTPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|237749448|ref|ZP_04579928.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
 gi|229380810|gb|EEO30901.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
          Length = 443

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/446 (50%), Positives = 309/446 (69%), Gaps = 16/446 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P +IV+ELD++++GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPDQIVTELDKHVVGQSKAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD++I   RE+   +VR 
Sbjct: 61  GKTEIARRLARLAEAPFIKIEATKFTEVGYVGRDVDTIIRDLVDISIKQTREAEMKKVRT 120

Query: 125 QASINAEERILDALVGKTAT-------------SNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   AE+R+L+ L+                   NTR+VFRKKLR+G + DKEI+IEV +
Sbjct: 121 KAIDAAEDRVLNILIPPPRDFGFNSNESNASSGENTRQVFRKKLREGSLDDKEIEIEVDE 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +   +     PG   +    +  +FS  MGSGRKK  ++ V+     L+ +E+ +L++ D
Sbjct: 181 SGPHMEIMAPPGMEEM-TEQIKSMFSG-MGSGRKKSRKVKVRDAIKLLIEEEAAKLVNED 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + +I   E  GIVFLDE DKI +R    G  VSR GVQRDLLPL+EG++V+TKYG I
Sbjct: 239 ELRQKAITNAEQNGIVFLDEIDKIASRSEIGGADVSRAGVQRDLLPLIEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF +S+P+DL+PE+QGR P+RV L+SL+  DF  ILT TE++LI QYK 
Sbjct: 299 KTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELESLSIEDFEQILTSTEASLISQYKA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TEG+ L+F  ++I  LA+++  +N    +IGARRL TVMER+LE+ISF+A D    T
Sbjct: 359 LLATEGMQLEFDNEAIRRLAEISHTVNERTENIGARRLYTVMERLLEEISFTAVDYNG-T 417

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ID  YV   +    ++ D+  ++L
Sbjct: 418 LTIDKAYVNERLEALSTDEDLSRYVL 443


>gi|196247644|ref|ZP_03146346.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           G11MC16]
 gi|196212428|gb|EDY07185.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           G11MC16]
          Length = 464

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/465 (44%), Positives = 301/465 (64%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV  LD++IIGQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPT
Sbjct: 1   MAETLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEV 120

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A +R+++ LV                                     R     
Sbjct: 121 KDRAEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L +G++ D+ + IE+ +    + +F    G     +N+ +    +M   RKK+  + V 
Sbjct: 181 QLANGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLMPKRRKKRR-LKVS 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQ 272
           +    L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI   ++      VSREGVQ
Sbjct: 240 EARKVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVD 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+
Sbjct: 360 DFVSILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTI 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 420 LEKLLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464


>gi|163859118|ref|YP_001633416.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella petrii
           DSM 12804]
 gi|229486074|sp|A9IH53|HSLU_BORPD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163262846|emb|CAP45149.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella petrii]
          Length = 444

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/441 (51%), Positives = 304/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD+YIIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVEEPLRHEIHPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR QA
Sbjct: 66  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQA 125

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDALV  +            SN R+ FRK+LR+G+  D EI+IE+A     +
Sbjct: 126 EDAAEDRILDALVPPSRGTSGEPERGEDSNARQTFRKRLREGKCDDLEIEIEIAQPVPQM 185

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +   +KK  +M V++ +  ++ +E+ + I+ D +   
Sbjct: 186 DVMTPPGMEEMA-EQLRGMFAG-LARDKKKPKKMKVKEAFKLIVEEEAAKRINEDDLRTA 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDHI
Sbjct: 244 AIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++LI QY  L+ TE
Sbjct: 304 LFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAQDFVRILSDTDASLIKQYSALLGTE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + LDF  D I+ LA++A ++N    +IGARRL TVME++LE++SF A+    KT+ IDA
Sbjct: 364 DVQLDFKPDGIERLAELAFSVNERTENIGARRLYTVMEKLLEELSFDATASSGKTITIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + +  S  D+  ++L
Sbjct: 424 AYVDAQLSEAASSQDLARYVL 444


>gi|297530611|ref|YP_003671886.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. C56-T3]
 gi|297253863|gb|ADI27309.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           C56-T3]
          Length = 464

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/465 (44%), Positives = 303/465 (65%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPT
Sbjct: 1   MAETLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEV 120

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A +R+++ LV                                     R     
Sbjct: 121 KDRAEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V 
Sbjct: 181 QLANGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVS 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQ 272
           +    L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI    +      VSREGVQ
Sbjct: 240 EARKVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVD 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+
Sbjct: 360 DFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTI 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 420 LEKLLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464


>gi|310817174|ref|YP_003965138.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium
           vulgare Y25]
 gi|308755909|gb|ADO43838.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium
           vulgare Y25]
          Length = 442

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/443 (53%), Positives = 322/443 (72%), Gaps = 12/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PR+IV+ LDR+I+GQ DAKRAVA+ALR+RWRR  L   +RDE+ PKNIL++GPTGV
Sbjct: 2   TDLTPRQIVAALDRHIVGQHDAKRAVAVALRSRWRRNHLDDAMRDEVYPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI   RE  R +VR+
Sbjct: 62  GKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAIIETREYMRADVRQ 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A  +AEER++ A+ G+ A   TRE+FR+KLR+GE+   EI+IEV DT++    F++PG 
Sbjct: 122 RAVASAEERVISAIAGEGAREQTREMFRQKLRNGELDGTEIEIEVPDTAAQ-PQFELPGQ 180

Query: 185 ASVG-ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             +G ++NL ++F K  G+ R KK  ++V + +  L+ DE+D+L+D + V   +++ V+ 
Sbjct: 181 PGMGNMVNLGDIFGKAFGARRVKKR-LTVAESHDALLNDEADKLLDDEAVKVAALKAVQE 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GIVF+DE DK+ AR    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA
Sbjct: 240 SGIVFIDEIDKVAARSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI---------LQYKELMK 354
           FHV++P+DLLPE+QGR P+RV L +L + DF  ILT+TE+ L           QY  LM 
Sbjct: 300 FHVAKPSDLLPELQGRLPIRVELTALTEDDFIRILTETENALTRQYTALTLPRQYTALMA 359

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TE + + FTED I A+A +A  +N +V +IGARRL TV+ERV ED+SF A +   + VVI
Sbjct: 360 TEDVDVSFTEDGIAAIARIAAEVNQSVENIGARRLYTVIERVFEDLSFDAPEQSGQQVVI 419

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  YV  H+G    ++D+  ++L
Sbjct: 420 DGAYVDRHLGQLARQSDLSRYVL 442


>gi|27904995|ref|NP_778121.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|31076735|sp|Q89A31|HSLU_BUCBP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27904393|gb|AAO27226.1| ATP-dependent hsl protease ATP-binding subunit HslU [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 444

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/444 (50%), Positives = 310/444 (69%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR +L  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVKELDRFIIGQKKAKRAVAIALRNRWRRMKLNKELRYEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVG+ V+ IIRDL D AI +++ +   + +++
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEIGYVGKEVDSIIRDLTDSAIKMIKSTAIKKNKKR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD LV               +  T ++FRKKLR+G + DKEI+I VA T  
Sbjct: 123 AKELAEERILDVLVPTIKNNWKKTNTNNNSEATLQIFRKKLREGTLDDKEIEINVAVTPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            I     PG   +    L  LF  + G+ R  K ++ ++     L+ +E+ +LI+++ + 
Sbjct: 183 GIEIMAPPGMEEL-TNQLQSLFQNLTGNKRNIK-KLKIKDAMKLLIEEEAAKLINLEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE +GIVF+DE DKI      +G  +SREGVQRDLLPL+EG +VSTK+G + TD
Sbjct: 241 KEAIYAVEQHGIVFIDEIDKICRNHGSSGPDISREGVQRDLLPLIEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L  +DF LILT+ ++++ +QY+ L+K
Sbjct: 301 HILFIASGAFQVSTPSDLIPELQGRLPIRVELQALTINDFELILTEPKASVTMQYQALLK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVV 413
           TE + ++FT++ I  +A+ A  +N ++ +IGARRL TV+ER++EDISF ASD   E T+ 
Sbjct: 361 TEKVKINFTKEGIRHIAEAAWKVNESMENIGARRLHTVLERLMEDISFHASDHRNEITIT 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID +YV+ H+    S  D+  FIL
Sbjct: 421 IDEKYVQKHLDKLISNEDLSRFIL 444


>gi|293602500|ref|ZP_06684946.1| ATP-dependent protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292819262|gb|EFF78297.1| ATP-dependent protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 444

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/442 (50%), Positives = 308/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRQEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IEVA  +  
Sbjct: 125 AEDAAEDRILDALVPPARGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FT++ +  LA++A ++N T  +IGARRL TVME++L+++SF A+  Q+K V ID
Sbjct: 363 EDVQLEFTDEGVRRLAELAYDVNETTENIGARRLYTVMEKLLDELSFDATSSQDKHVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNSQLAEAASSQDLARYVL 444


>gi|56707807|ref|YP_169703.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89256313|ref|YP_513675.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica LVS]
 gi|110670278|ref|YP_666835.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis FSC198]
 gi|115314758|ref|YP_763481.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134302010|ref|YP_001121979.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|156502382|ref|YP_001428447.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010172|ref|ZP_02275103.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. holarctica FSC200]
 gi|187931847|ref|YP_001891832.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|254367645|ref|ZP_04983666.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. holarctica 257]
 gi|290953147|ref|ZP_06557768.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313675|ref|ZP_06804259.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           tularensis subsp. holarctica URFT1]
 gi|62286722|sp|Q5NGY9|HSLU_FRATT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122325223|sp|Q0BM40|HSLU_FRATO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|122500777|sp|Q2A3M7|HSLU_FRATH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123359528|sp|Q14IE1|HSLU_FRAT1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221480|sp|A7NBY8|HSLU_FRATF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221482|sp|A4IY57|HSLU_FRATW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238691570|sp|B2SH45|HSLU_FRATM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56604299|emb|CAG45320.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|89144144|emb|CAJ79403.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. holarctica LVS]
 gi|110320611|emb|CAL08703.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115129657|gb|ABI82844.1| T01 family HslU component of HslUV peptidase (ClpY) [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134049787|gb|ABO46858.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134253456|gb|EBA52550.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. holarctica 257]
 gi|156252985|gb|ABU61491.1| heat shock protein HslVU, ATPase subunit HslU [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|187712756|gb|ACD31053.1| ATP-dependent protease HslVU, ATPase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|282158981|gb|ADA78372.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 455

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/457 (50%), Positives = 311/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|138894735|ref|YP_001125188.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus
           thermodenitrificans NG80-2]
 gi|166221483|sp|A4IM89|HSLU_GEOTN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134266248|gb|ABO66443.1| Two-component ATP-dependent protease (N-terminalserine protease)
           [Geobacillus thermodenitrificans NG80-2]
          Length = 464

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/465 (44%), Positives = 301/465 (64%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV  LD++IIGQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPT
Sbjct: 1   MAETLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E +  EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEV 120

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A +R+++ LV                                     R     
Sbjct: 121 KDRAEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L +G++ D+ + IE+ +    + +F    G     +N+ +    +M   RKK+  + V 
Sbjct: 181 QLANGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLMPKRRKKRR-LKVS 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQ 272
           +    L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI   ++      VSREGVQ
Sbjct: 240 EARKVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVD 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+
Sbjct: 360 DFVSILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTI 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 420 LEKLLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464


>gi|68171727|ref|ZP_00545080.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657724|ref|YP_507784.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|67998849|gb|EAM85548.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599181|gb|ABD44650.1| heat shock protein HslVU, ATPase subunit HslU [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 487

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/435 (53%), Positives = 329/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++I  ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G TG+G
Sbjct: 54  ELTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTGIG 113

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+ +E  R  V  +
Sbjct: 114 KTEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLEKEKSRKFVETK 173

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A   AE  IL+ALVG  A+  T+ +F++KLR+GE  + EI I + ++ + I + DIP   
Sbjct: 174 AKSLAENIILEALVGADASQETKTIFQEKLRNGEFENFEISISIKESKNAIPSIDIPNIP 233

Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G  VGI+N++E+  K++G+ ++ K I+++V++    L+ +ES++L+D D + +D++ +  
Sbjct: 234 GNQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKDALLLAS 293

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASG
Sbjct: 294 NDGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASG 352

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV LK L+K D   ILT+ ES+L+ QY  LMKTE I +DF
Sbjct: 353 AFHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITIDF 412

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T++ +  +A++A  +N  V +IGARRL T++E+++EDIS++A++   +T VID+EYV+  
Sbjct: 413 TDEGVSTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGRTYVIDSEYVKKK 472

Query: 423 IGDFPSETDMYHFIL 437
           + D   + D+  FIL
Sbjct: 473 LEDIAKQLDLSKFIL 487


>gi|224456876|ref|ZP_03665349.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370304|ref|ZP_04986309.1| ATP-dependent protease HslVU [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874621|ref|ZP_05247331.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568547|gb|EDN34201.1| ATP-dependent protease HslVU [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840620|gb|EET19056.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 455

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/457 (50%), Positives = 311/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  +++V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+  AE+RILD L+    TS                       TRE+FRKK+++GE+
Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            DKEI+IEVA     I     PG        L +LFS  + + +KK  +M ++       
Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGM-EDMTSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +L++ + +   +++ VE  GIVFLDE DK+  + S +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLVNEEDIKARALKAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEGI L F ED+I  +A++A  +N  V +IGARRL TVMER+LE I
Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A +L EK + I  +YV   +G+     D+  +IL
Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455


>gi|154686032|ref|YP_001421193.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           amyloliquefaciens FZB42]
 gi|166221460|sp|A7Z4N6|CLPY_BACA2 RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|154351883|gb|ABS73962.1| ClpY [Bacillus amyloliquefaciens FZB42]
          Length = 467

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 203/463 (43%), Positives = 300/463 (64%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQDAK+AVA+ALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E +  EV+EQA
Sbjct: 66  TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGNQAANDDEADQQEEASLEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S  +   +KK+ +M+V++ 
Sbjct: 186 ALGELEDHYVSVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSN-LVPKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEAGKLIDMDEVGQEAVLRAEEGGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LED+SF A D+  + V I  +YV   +G   +  D+  FIL
Sbjct: 425 RLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467


>gi|319766229|ref|YP_004131730.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y412MC52]
 gi|317111095|gb|ADU93587.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y412MC52]
          Length = 464

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/465 (43%), Positives = 303/465 (65%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPT
Sbjct: 1   MAETLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEV 120

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A +R+++ LV                                     R     
Sbjct: 121 KDRAEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V 
Sbjct: 181 QLANGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVS 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQ 272
           +    L+ +E+ +LIDMD V ++++++ E  GI+F+DE DKI    +      VSREGVQ
Sbjct: 240 EARKVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  
Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVD 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+
Sbjct: 360 DFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTI 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 420 LEKLLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464


>gi|33594014|ref|NP_881658.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis
           Tohama I]
 gi|62286864|sp|Q7VUJ9|HSLU_BORPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33564088|emb|CAE43356.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           pertussis Tohama I]
 gi|332383431|gb|AEE68278.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella
           pertussis CS]
          Length = 444

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/441 (49%), Positives = 303/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  A
Sbjct: 66  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHA 125

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IE+A     +
Sbjct: 126 EDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQM 185

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +   
Sbjct: 186 DVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRAA 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDHI
Sbjct: 244 AITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ TE
Sbjct: 304 LFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + IDA
Sbjct: 364 DVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV L + +     D+  ++L
Sbjct: 424 AYVDLQLAETAGSQDLARYVL 444


>gi|167630283|ref|YP_001680782.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium
           modesticaldum Ice1]
 gi|167593023|gb|ABZ84771.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium
           modesticaldum Ice1]
          Length = 464

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/461 (47%), Positives = 313/461 (67%), Gaps = 30/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV ELDR+I+GQQ AK+AVAIALRNR+RRQ LP +LRDE+ PKNIL++GPTGVG
Sbjct: 5   NLTPKQIVEELDRHIVGQQAAKKAVAIALRNRYRRQLLPENLRDEVTPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  R +EV+ +
Sbjct: 65  KTEIARRLARLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAERMEEVKTR 124

Query: 126 ASINAEERILDALVGKTATS-----------------------------NTREVFRKKLR 156
           A   AEER+++ LV +                                   R + R+KL+
Sbjct: 125 ADREAEERLVELLVPQPKAPKNMANPLEMLFGGGQTNQPSPSSDDPGLREKRAIIRQKLK 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             E+ D  I+IEV D +  + +  +  G      N+  +  +++  GR KK R++V++  
Sbjct: 185 RLELEDDWIEIEVDDNAMPLGDIFVGSGLDEMGANIQNMLGQILPRGR-KKRRVTVREAR 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L   E+ +LIDMD V R++++  E  GI+FLDE DKI +R+ G G  VSR GVQRD+L
Sbjct: 244 RILAIQEAQKLIDMDAVTREALERAEQSGIIFLDEIDKIASREGGQGPDVSRGGVQRDIL 303

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L++ DF+ 
Sbjct: 304 PIVEGSTVMTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPLRVELEALSRQDFQR 363

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ E +L+ QY  L+ TE + L F E++++A+A +A  +N+   +IGARRL T++E+V
Sbjct: 364 ILTEPEGSLLKQYVALLSTEAVELVFKEEALEAIAAIAYRVNTQTENIGARRLHTILEKV 423

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A DL +K VVID EYV   +       D+  +IL
Sbjct: 424 LEDVSFDAPDLLDKKVVIDKEYVESRLEGILQREDLSRYIL 464


>gi|167627816|ref|YP_001678316.1| ATP-dependent protease ATP-binding subunit HslU [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668377|ref|ZP_04755955.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876910|ref|ZP_05249620.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|189043911|sp|B0TZG2|HSLU_FRAP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167597817|gb|ABZ87815.1| ATP-dependent protease HslVU, ATPase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254842931|gb|EET21345.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 455

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/457 (49%), Positives = 311/457 (68%), Gaps = 24/457 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL  ++R E+ PKNIL++GPT
Sbjct: 1   MTQVMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDDEMRQEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE  + +V
Sbjct: 61  GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120

Query: 123 REQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEI 160
            E+A+I AE+RILD L+     S                       TRE+FRKK+++GE+
Sbjct: 121 TEKAAILAEDRILDVLIPPARASESKVGFANEPAEDAQSKKEKENKTREIFRKKIQNGEL 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +DKEI+IEV+     I     PG        L +LFS  + S +KK  +M ++     + 
Sbjct: 181 NDKEIEIEVSVAPKSIGVMGPPGM-EDMTNQLQDLFSS-LSSDKKKTKKMRIKDAIKLVK 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +LI+ + +   +++ VE  GIVFLDE DK+  +   +G  VSREGVQRDLLPLVE
Sbjct: 239 DEEAAKLINEEDIKARALESVEQNGIVFLDEIDKVCKKSGTSGADVSREGVQRDLLPLVE 298

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL   DF  IL +
Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILKE 358

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            + +++ QY  LMKTEG+ L F ED+I  +A+++  +N  V +IGARRL TVMER+LE+I
Sbjct: 359 PDCSILKQYIALMKTEGVELSFEEDAIRKIAEISFQVNEEVENIGARRLHTVMERLLEEI 418

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL+ K++ I  +Y+   +       ++  +IL
Sbjct: 419 SFDAPDLENKSINITTDYINEKLSGLVKNKNLSQYIL 455


>gi|33599169|ref|NP_886729.1| ATP-dependent protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
 gi|62286868|sp|Q7WQZ4|HSLU_BORBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33575215|emb|CAE30678.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
          Length = 444

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/441 (49%), Positives = 303/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  A
Sbjct: 66  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHA 125

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IE+A     +
Sbjct: 126 EDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQM 185

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +   
Sbjct: 186 DVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRAA 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDHI
Sbjct: 244 AITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ TE
Sbjct: 304 LFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVNILSETDASLIKQYTALLGTE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + IDA
Sbjct: 364 DVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV L + +     D+  ++L
Sbjct: 424 AYVDLQLAETAGSQDLARYVL 444


>gi|321315382|ref|YP_004207669.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           BSn5]
 gi|291484167|dbj|BAI85242.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021656|gb|ADV96642.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           BSn5]
          Length = 467

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/463 (43%), Positives = 303/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQ+AK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA
Sbjct: 66  TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S +M   +KK+ +M+V++ 
Sbjct: 186 ALGELEDYYVTVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++Q  E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEASKLIDMDEVSQEAVQRAEESGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 425 RLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467


>gi|56419749|ref|YP_147067.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus
           kaustophilus HTA426]
 gi|261419414|ref|YP_003253096.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp.
           Y412MC61]
 gi|62286711|sp|Q5L0N1|HSLU_GEOKA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56379591|dbj|BAD75499.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
           HTA426]
 gi|261375871|gb|ACX78614.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y412MC61]
          Length = 465

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/465 (43%), Positives = 303/465 (65%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE+MPKNIL++GPT
Sbjct: 2   MAETLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPT 61

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV
Sbjct: 62  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEV 121

Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153
           +++A   A +R+++ LV                                     R     
Sbjct: 122 KDRAEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAW 181

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L +G++ ++ + IE+ + +    +F    G     +N+ +  S +M   R+KK R+ V 
Sbjct: 182 QLANGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVS 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQ 272
           +    L+ +E+ +LIDMD V ++++++ E  GI+F+DE DKI    +      VSREGVQ
Sbjct: 241 EARKVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+  
Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVD 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T+
Sbjct: 361 DFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+ F A D+    VVI  +YV   +G      D+  FIL
Sbjct: 421 LEKLLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 465


>gi|212639572|ref|YP_002316092.1| ATP-dependent protease ATP-binding subunit HslU [Anoxybacillus
           flavithermus WK1]
 gi|212561052|gb|ACJ34107.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Anoxybacillus
           flavithermus WK1]
          Length = 469

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/459 (43%), Positives = 299/459 (65%), Gaps = 29/459 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV +LD++I+GQ +AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 12  LTPKQIVEKLDQFIVGQHEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E + +EV+EQA
Sbjct: 72  TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEKKMNEVKEQA 131

Query: 127 SINAEERILDALVGKTATSNTREVFR---------------------------KKLRDGE 159
              A +R+++ LV        +  F                             KL +GE
Sbjct: 132 EQLANKRLVELLVPGKTKQPMKNPFELLFGGTQEQADSGHEEQHIAEKRRQIAWKLANGE 191

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+ + +E+ +    + +     G     +N+ ++ S  M   RKK+     ++    L
Sbjct: 192 LEDELVTVEIEEQQPLMFDLFQGAGMEQMGVNMQDMLSSFMPKKRKKRKLKV-KEARHVL 250

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPL 278
             +E+ +LIDMD V +++I++ E  GI+F+DE DKI  +   G+   VSREGVQRD+LP+
Sbjct: 251 ANEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARKGQAGSSADVSREGVQRDILPI 310

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF  IL
Sbjct: 311 VEGSTVMTKYGPVKTDYMLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLTVDDFVKIL 370

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            +  + L+ QY  L+ TEGI L+F++D+I  +A+VA  +N    +IGARRL T+ME++LE
Sbjct: 371 VEPNNALLKQYVALLATEGIQLEFSDDAIRKIAEVAFEVNQQTDNIGARRLHTIMEKLLE 430

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+ + A D+  + +VI  +YV   +G+     D+  FIL
Sbjct: 431 DLLYEAPDVHLEKIVITPQYVEKKLGNIVRNKDLSQFIL 469


>gi|88607388|ref|YP_505627.1| ATP-dependent protease ATP-binding subunit [Anaplasma
           phagocytophilum HZ]
 gi|88598451|gb|ABD43921.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Anaplasma
           phagocytophilum HZ]
          Length = 437

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/436 (53%), Positives = 325/436 (74%), Gaps = 5/436 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SP++I  ELDR+I+GQ +AKRAVA ALR+RWRR ++P  LRDE++PKNIL++G TGVG
Sbjct: 3   DLSPKQITKELDRFIVGQTEAKRAVANALRSRWRRNRVPQPLRDEIIPKNILMIGHTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  VR+Q
Sbjct: 63  KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKYRKVVRKQ 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183
           A  +AE+ IL+ LVG  A+  T+  FR KLR GE  + EI I V D    +   FD+PG 
Sbjct: 123 ARKSAEDIILNCLVGADASEETKNAFRHKLRAGEYENSEISINVKDNRKSMPPSFDVPGM 182

Query: 184 -GASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            G  VGI+N++E+  KV+G  +  + I  +V++    L+ +E+++LID D + R+++ + 
Sbjct: 183 PGGQVGIMNINEIVQKVLGGNKLSRTISTTVKEAREILLDEETEKLIDEDKIVREALHIA 242

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIAS
Sbjct: 243 SNEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIAS 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DLLPE+QGR P+RV L+ L++ D   ILT+ E+NL+ QY+ L++TEG+ ++
Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSRDDLVRILTEPEANLLKQYRALLETEGVTVE 361

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FTED I A+A++A  +N  V +IGARRL T+ME+++EDIS++AS+   +T VID ++VR 
Sbjct: 362 FTEDGIFAIAEIASTVNREVENIGARRLHTIMEKLMEDISYNASENSGQTFVIDEKHVRE 421

Query: 422 HIGDFPSETDMYHFIL 437
            + D   + D+  FIL
Sbjct: 422 RLEDISKQLDLSKFIL 437


>gi|212702929|ref|ZP_03311057.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098]
 gi|212673517|gb|EEB34000.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/434 (47%), Positives = 302/434 (69%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ LP +LRDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLPEELRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE     VR  A
Sbjct: 64  TEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRAAA 123

Query: 127 SINAEERILDALVGKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              AE R+LD L+  +     ++TRE  R++ R G + D+E+++EV +  +   +     
Sbjct: 124 EAAAESRLLDLLLPNSFGGDRNDTREKLRQQFRLGFMDDREVEVEVTEQPAQGVDMFAIP 183

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G       + ++FSK     R  + +M V++ Y  L+++ES +L+D + +   + + VE 
Sbjct: 184 GMEQMGNQVRDMFSKAFPPRRS-RRKMKVREAYNVLIQEESGKLVDQEALVDKARERVEQ 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GI+F+DE DKI +        +SREGVQRDLLP+VEGS+V+TKYG + TDHILFIA+GA
Sbjct: 243 MGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSAVNTKYGMVRTDHILFIAAGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH S+P+D++PE+QGRFP+RV L +L K +F  ILT+  + L  QY  L+ TE I L F+
Sbjct: 303 FHFSKPSDMIPELQGRFPLRVELNALGKDEFLRILTEPHNALTRQYAALLGTEQIRLQFS 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED I+ +A  A  +N+T  +IGARRL T+ME++L DISF A D+    +V++  YV+ H+
Sbjct: 363 EDGIEEIAAFAEEINATSENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRAYVQEHL 422

Query: 424 GDFPSETDMYHFIL 437
            D   + D+  +IL
Sbjct: 423 RDVREDQDLSQYIL 436


>gi|187476657|ref|YP_784680.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella avium
           197N]
 gi|123515068|sp|Q2L1D0|HSLU_BORA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115421243|emb|CAJ47748.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella avium
           197N]
          Length = 444

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/441 (49%), Positives = 300/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD+YIIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  A
Sbjct: 66  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSHA 125

Query: 127 SINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILD LV               + TR+ FRK+LR+G + D EI+I++A  +  +
Sbjct: 126 EDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQL 185

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +   + K  ++ V++ +  ++ +E+ + ++ D +   
Sbjct: 186 DVMTPPGMEEMA-EQLRGMFAG-LARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRAA 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDHI
Sbjct: 244 AIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+SRP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++L+ QY  L+ TE
Sbjct: 304 LFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLATE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L FTED I  LA++A ++N    +IGARRL TVME++LE++SF A     ++V IDA
Sbjct: 364 DVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   + +  S  D+  ++L
Sbjct: 424 AYVDAQLSEAASSQDLARYVL 444


>gi|21672818|ref|NP_660885.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|22654256|sp|Q9Z617|HSLU_BUCAP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21623470|gb|AAM68096.1| heat shock protein HslU [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 443

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 217/443 (48%), Positives = 302/443 (68%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IVSEL+++IIGQ+ AK+AVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPPQIVSELNKFIIGQEQAKKAVAIALRNRWRRMQLNNELRHEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R    ++ + +
Sbjct: 63  KTEIARRLAKLANSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRVKNIEKNKLR 122

Query: 126 ASINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                EERILD LV +   +           NT +VFRKKLR+G + +KEI+I V  ++ 
Sbjct: 123 VEEIVEERILDVLVPRPKNNWTENEKNESLLNTLQVFRKKLREGILDEKEIEINVLASTM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLLKEEEAAKLINQEEIK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTKYG + TD
Sbjct: 241 KEAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLVEGCTVSTKYGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  S P+DL+PE+QGR P++V L+ L  +DF  ILT+  +++  QYK LMK
Sbjct: 301 HILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILTEPTASITAQYKALMK 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT++ I  +A+ A  +N ++ +IGARRL T++E+++EDISF+A D   KT+ I
Sbjct: 361 TEGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMEDISFNACDNVGKTIEI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           ++EYV  H+    S  D+  FIL
Sbjct: 421 NSEYVGKHLDQLISNEDLGRFIL 443


>gi|260892478|ref|YP_003238575.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii
           KC4]
 gi|260864619|gb|ACX51725.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii
           KC4]
          Length = 463

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/462 (45%), Positives = 307/462 (66%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+YI+GQ++AKRAVAIALRNR+RR  LP +LRDE+MPKNIL++GPTGVG
Sbjct: 3   DLTPRQIVAELDKYIVGQEEAKRAVAIALRNRYRRSLLPPELRDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTEIGYVGR+VE ++RDLV+ A+ +V++ +   V ++
Sbjct: 63  KTEIARRLARLVRAPFVKVEATKFTEIGYVGRDVEAMVRDLVETAVRMVKQEKMAAVEDK 122

Query: 126 ASINAEERILDAL------------------------------VGKTATSNTREVFRKKL 155
           A   A ER+++ L                                    +  R+V R++L
Sbjct: 123 AQELAIERLVEILVPAPAAPARNPLELLFGYSRPAEGMGAEERRAAEELAYRRQVVRERL 182

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D+ ++IEV D S+         G     +NL +    +    +K++     ++ 
Sbjct: 183 LRGELEDEYVEIEVEDRSTPFLEIFSAAGVEEMGINLQDFMGNLFPPRKKRRRVKV-KEA 241

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L + E+ +LIDM+ V  ++I+  E +GI+F+DE DKI  ++ G G  VSR GVQRD+
Sbjct: 242 RRYLAQQEAAKLIDMEEVTAEAIKRAEEHGIIFIDEIDKIAGKEIGPGPDVSRAGVQRDI 301

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LK L + DF 
Sbjct: 302 LPIVEGSTVPTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKPLTREDFL 361

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+  + LI QY+ L+ TEG+ L+FT D++ A+AD+A  +N    +IGARRL TVME+
Sbjct: 362 QILTEPANALIRQYQALLATEGVKLEFTPDALQAVADIAYTVNEQTENIGARRLHTVMEK 421

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++EDISF+A +++ + +VIDA+YVR  +       D+  +IL
Sbjct: 422 LIEDISFAAPEMKGQEIVIDADYVRRKLEPIVKREDLSRYIL 463


>gi|52080218|ref|YP_079009.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           licheniformis ATCC 14580]
 gi|52785595|ref|YP_091424.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           licheniformis ATCC 14580]
 gi|81825306|sp|Q65JN3|CLPY_BACLD RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|52003429|gb|AAU23371.1| two-component ATP-dependent protease (N-terminal serine protease)
           [Bacillus licheniformis ATCC 14580]
 gi|52348097|gb|AAU40731.1| ClpY [Bacillus licheniformis ATCC 14580]
          Length = 467

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/463 (43%), Positives = 303/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ DAK+AVA+ALRNR+RR  L   LR+E++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVERLDQYIVGQLDAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+  A
Sbjct: 66  TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +R++  LV                                     N R+    +L
Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S +M   + K+ +++V++ 
Sbjct: 186 ALGELEDHYVTVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSSLMPKKK-KRRKLTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD   ++++Q  E  GI+F+DE DKI  +    +   VSREGVQRD
Sbjct: 245 RKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKIAKKSGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+  DF
Sbjct: 305 ILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSIDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L+ QYK L+KTEGI L+F++D+I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LE++SF A D+  + VVI  +YV   +G      D+  FIL
Sbjct: 425 RLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467


>gi|16078679|ref|NP_389498.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309491|ref|ZP_03591338.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313816|ref|ZP_03595621.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318740|ref|ZP_03600034.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323011|ref|ZP_03604305.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|729777|sp|P39778|CLPY_BACSU RecName: Full=ATP-dependent protease ATPase subunit ClpY
 gi|535350|gb|AAB03371.1| CodX [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633988|emb|CAB13489.1| two-component ATP-dependent protease (ATPase and chaperone)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 467

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/463 (43%), Positives = 303/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQQ+AK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA
Sbjct: 66  TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S +M   +KK+ +M+V++ 
Sbjct: 186 ALGELEDYYVTVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++Q  E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEASKLIDMDEVGQEAVQRAEESGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LED+SF A D+  + + I  +YV   +G      D+  FIL
Sbjct: 425 RLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467


>gi|229086382|ref|ZP_04218558.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-44]
 gi|228696898|gb|EEL49707.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-44]
          Length = 463

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 206/465 (44%), Positives = 306/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVG------------------------------KTATSNTREVFR 152
           +++A   A +R+++ LV                                T     R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGSQNANQTSETHDDTEIEKKRQEVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KKL  G + D+ + IEVA+  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 KKLASGLLEDEVVSIEVAEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSVD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ L+ QY  L+ TEGI ++F++D+I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILVEPDNALVKQYIALLATEGIEIEFSDDAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|83589878|ref|YP_429887.1| ATP-dependent protease ATP-binding subunit HslU [Moorella
           thermoacetica ATCC 39073]
 gi|83572792|gb|ABC19344.1| heat shock protein HslVU, ATPase subunit HslU [Moorella
           thermoacetica ATCC 39073]
          Length = 461

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/462 (48%), Positives = 318/462 (68%), Gaps = 30/462 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            +F+PR+IV+ELDRYIIGQ++AK+ VA+ALRNR+RRQ+L  +LRDE++PKNI+++GPTGV
Sbjct: 1   MDFTPRQIVAELDRYIIGQEEAKKCVAVALRNRYRRQKLNPELRDEVLPKNIIMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L GAPF+KVE T+FTE+GYVGR+VE +IR+LV+ A+ +V+  +R EV  
Sbjct: 61  GKTEIARRLAKLVGAPFLKVEATRFTEVGYVGRDVESMIRELVENAVRMVKIEKRAEVEA 120

Query: 125 QASINAEERILDALVGKTATS-----------------------------NTREVFRKKL 155
           +A+  AE+R+LD LV +                                   R + R+KL
Sbjct: 121 KAAKMAEKRLLDLLVPRQGKEKGTHNPWEVLFGGAQVNSEGTVLEEESLREKRAILREKL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  E+ D  +++EV DT+          G     +NL ++   ++   RK+K  ++V + 
Sbjct: 181 RRQELEDMMVEVEVEDTTGPGGVILGGLGLEELGINLQDMLGNMLPR-RKRKRLVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L + E+D+LIDMD V   ++Q VE  GI+FLDE DKI  R+S +G  VSREGVQRD+
Sbjct: 240 RRILTQQEADKLIDMDDVAAIAVQRVEQEGIIFLDEIDKIAGRESSHGPDVSREGVQRDI 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V TKYG + TDHILFIA+GAFHV++PADL+PE+QGRFP+RV LKSL + DF+
Sbjct: 300 LPIVEGTTVQTKYGPVKTDHILFIAAGAFHVAKPADLIPELQGRFPLRVELKSLGREDFQ 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ +++L+ QY  L+  +GI L F+ D+I  +AD+A  +N+   DIGARRL T++E+
Sbjct: 360 RILTEPKNSLLKQYTALLAVDGIELQFSADAIAEIADIAYTVNTQGEDIGARRLHTILEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L+D+ F A ++QE+ VVID  YVR  +GD    TD+  +IL
Sbjct: 420 ILQDLLFEAPEVQERKVVIDRTYVRKQLGDIMQRTDVQAYIL 461


>gi|33594894|ref|NP_882537.1| ATP-dependent protease ATP-binding subunit [Bordetella
           parapertussis 12822]
 gi|62286866|sp|Q7W216|HSLU_BORPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|33564970|emb|CAE39917.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella
           parapertussis]
          Length = 444

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/441 (49%), Positives = 303/441 (68%), Gaps = 12/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV+ELD++IIGQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPDEIVAELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR  A
Sbjct: 66  TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHA 125

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IE+A     +
Sbjct: 126 EDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQM 185

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG   +    L  +F+  +   +KK  ++ V++ +  ++ +E+ + ++ D +   
Sbjct: 186 DVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRAA 243

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDHI
Sbjct: 244 AITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHI 303

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH++RP+DL+PE+QGRFP+RV L SL+  DF  IL++T+++LI QY  L+ TE
Sbjct: 304 LFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTE 363

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L+FT+D I  LA++A ++N    +IGARRL TVME++LE++SF AS    + + IDA
Sbjct: 364 DVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITIDA 423

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV L + +     D+  ++L
Sbjct: 424 AYVDLQLAETAGSQDLARYVL 444


>gi|103487080|ref|YP_616641.1| ATP-dependent protease ATP-binding subunit HslU [Sphingopyxis
           alaskensis RB2256]
 gi|98977157|gb|ABF53308.1| heat shock protein HslVU, ATPase subunit HslU [Sphingopyxis
           alaskensis RB2256]
          Length = 433

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/435 (53%), Positives = 312/435 (71%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +P+ IV+ LD +IIGQ  AKRAVA+ALRNRWRRQQLPA+LRDE+ PKNIL++GPT
Sbjct: 1   MNKDLTPKAIVAALDTHIIGQDAAKRAVAVALRNRWRRQQLPAELRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + ++ RRD V
Sbjct: 61  GCGKTEISRRLAKLADAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKDRRRDAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           R  A   A ER+LDAL GK A+  TR+ FR+++R+G + D E++IEVAD +  +S     
Sbjct: 121 RAAAEEAAMERLLDALTGKGASEATRQSFRQRIREGHLDDSEVEIEVAD-APGMSFELPG 179

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
               + ++NLS++  K MG   +K+ +M V      L+ +E D+ +D D V R ++   E
Sbjct: 180 QPGQMSMINLSDMLGKAMGGLPRKRRKMKVIDAATRLIEEEQDKRLDQDDVARVALADAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASG
Sbjct: 240 ANGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L +L + DF  IL++T++ L  QY  L+ TEG+ L+F
Sbjct: 299 AFHVAKPSDLLPELQGRLPIRVELGALTEEDFVRILSETKAGLPEQYVALLGTEGVTLNF 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
             D+I  +A +A  +N  V +IGARRLQT+MER++E+ISF+A D    T+ IDA YV   
Sbjct: 359 APDAIARVAKLAAEVNEKVENIGARRLQTIMERLVEEISFTAEDAPGATIDIDAAYVDRQ 418

Query: 423 IGDFPSETDMYHFIL 437
           + D   +TD+  ++L
Sbjct: 419 LADVVGDTDLSKYVL 433


>gi|319764382|ref|YP_004128319.1| heat shock protein hslvu, atpase subunit hslu [Alicycliphilus
           denitrificans BC]
 gi|330826601|ref|YP_004389904.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans K601]
 gi|317118943|gb|ADV01432.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans BC]
 gi|329311973|gb|AEB86388.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus
           denitrificans K601]
          Length = 434

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/436 (52%), Positives = 311/436 (71%), Gaps = 7/436 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSELD +I+GQ  AKRAVAIALRNRWRRQQ+ + LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPQEIVSELDNHIVGQAAAKRAVAIALRNRWRRQQVDSGLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+   RE+   +VR +A
Sbjct: 61  TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRARA 120

Query: 127 SINAEERILDALV-----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
              AEERILD L+     G+++    R+VFRKKLR+G++ DKEI+I+VAD    +     
Sbjct: 121 EDAAEERILDVLIPPPRGGESSDGTARQVFRKKLREGQLDDKEIEIDVADARPQLEIM-G 179

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           P G       L  +FS  +G  R+K  ++ + +    L  +E+ +L++ + V   ++   
Sbjct: 180 PQGMEEMAEQLRGMFSH-LGQERRKTRKLKIAEALRLLTDEEAAKLVNEEEVKTRAVSNA 238

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVF+DE DK+ AR    G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIAS
Sbjct: 239 EQNGIVFIDEIDKVAARQEAGGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIAS 298

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+++P+DL+PE+QGRFP+RV L SL+  DF  ILT T ++L+ QY+ L+ TEG+ L+
Sbjct: 299 GAFHLAKPSDLIPELQGRFPIRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALE 358

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT + I  LA +A ++N    +IGARRL TVMER+L+++SF A+ L  +TVV+DA+YV  
Sbjct: 359 FTPEGITRLAHIAYDVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVVVDADYVNA 418

Query: 422 HIGDFPSETDMYHFIL 437
            +     + D+  +IL
Sbjct: 419 RLQSLSQDEDLSRYIL 434


>gi|254427703|ref|ZP_05041410.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp.
           DG881]
 gi|196193872|gb|EDX88831.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp.
           DG881]
          Length = 447

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/446 (51%), Positives = 317/446 (71%), Gaps = 15/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IVSEL+R+I+GQ  AK+AVA+ALR RWRR  LPA++R E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKDIVSELNRHIVGQDAAKKAVALALRTRWRRMLLPAEMRAEVAPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+++AI ++R+     V  Q
Sbjct: 63  KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEMAIKLLRDKEIARVGSQ 122

Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AEERILDAL+               S TR++FRKKLR+GE+ DKEID++VA     
Sbjct: 123 ADDAAEERILDALLPAARAEDGSTNDNTDSKTRQIFRKKLREGELDDKEIDVDVASQPPG 182

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L ++FSK+ G+ ++K  ++ V++ Y  +  +E+ R ++ D +  
Sbjct: 183 VDIMAPPGMEEM-TSQLQQMFSKMGGNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKV 241

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I +VEN GIVF+DE DK+  R  G G  VSREGVQRDLLPL+EGS+VSTKYG + TDH
Sbjct: 242 QAIDVVENNGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDH 301

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGR P+RV L  L+  DF+ ILT+ + +L  QYK L++T
Sbjct: 302 ILFIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLET 361

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----EKT 411
           EG+ L+ T+D I  +A+VA  +N    +IGARRL TV+E++LE+ISF A  L     +K 
Sbjct: 362 EGLNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKP 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +V+DAE V  ++G+   + D+  +IL
Sbjct: 422 LVLDAEAVDRYLGELADDEDLSRYIL 447


>gi|319646003|ref|ZP_08000233.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp.
           BT1B_CT2]
 gi|317391753|gb|EFV72550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp.
           BT1B_CT2]
          Length = 467

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/463 (43%), Positives = 303/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ +AK+AVA+ALRNR+RR  L   LR+E++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVERLDQYIVGQLNAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+  A
Sbjct: 66  TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +R++  LV                                     N R+    +L
Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  + +EV +    + +     G     +N+ +  S +M   + K+ +++V++ 
Sbjct: 186 ALGELEDHYVTVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSSLMPKKK-KRRKLTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD   ++++Q  E  GI+F+DE DKI  +    +   VSREGVQRD
Sbjct: 245 RKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKIAKKSGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+  DF
Sbjct: 305 ILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSIDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L+ QYK L+KTEGI L+F++D+I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LE++SF A D+  + VVI  +YV   +G      D+  FIL
Sbjct: 425 RLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467


>gi|255003419|ref|ZP_05278383.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Puerto Rico]
 gi|255004539|ref|ZP_05279340.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Virginia]
          Length = 480

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 45  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 104

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 105 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 164

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 165 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 464 EKLEDISKQMDLSKFIL 480


>gi|157803951|ref|YP_001492500.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           canadensis str. McKiel]
 gi|166221603|sp|A8EZD2|HSLU_RICCK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157785214|gb|ABV73715.1| hypothetical protein A1E_03940 [Rickettsia canadensis str. McKiel]
          Length = 450

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/438 (50%), Positives = 321/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPAQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE++D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKVLNGELNDTEIEISVADTAPIGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G+S+G+LNL ++  + +GS + K  +M V++    ++ +E ++LID + + + +I + 
Sbjct: 193 MPGSSMGVLNLGDMIGRALGSSKTKTKKMLVKEAMAIIIPEELEKLIDQEKIIQQAITLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASAPSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGQVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFTASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDQFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  FIL
Sbjct: 433 ENQLSKIITNLDLAKFIL 450


>gi|326385660|ref|ZP_08207290.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209818|gb|EGD60605.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 433

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/435 (52%), Positives = 308/435 (70%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  N +P+ IV  LD +I+GQQDAKRAVA+ALRNRWRRQ L   LRDE+ PKNIL++GPT
Sbjct: 1   MNDNLTPKAIVRALDEHIVGQQDAKRAVAVALRNRWRRQHLAPALRDEVSPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + +  RR+ V
Sbjct: 61  GCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKARRREAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A +R+L ALVG  A+  TRE FR ++ +G ++D E++IEV D+ S        
Sbjct: 121 REAASKAAMDRLLKALVGDGASEATRESFRNRILEGAMADVEVEIEVEDSPSMPMEIPGM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG  VG++NLS++  K  G    K+ ++ V   + +L+ +E+++ +D D V R ++   E
Sbjct: 181 GG-GVGMINLSDMMGKAFGRQPTKRRKLRVPDAWEKLVDEEAEKRMDQDDVARVALANAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASG
Sbjct: 240 TNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHVLFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+D+LPE+QGR P+RV LK L++ DF  IL++T +NL+ QY+ L++TE + L+F
Sbjct: 299 AFHVAKPSDMLPELQGRLPIRVELKGLSEDDFVRILSETRANLVEQYRALLETEKVALEF 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T D+I A+A  A  +N  V +IGARRLQTVME++LE++SF A D    TV +D  YV   
Sbjct: 359 TPDAIRAIARTAAQVNEAVENIGARRLQTVMEKLLEEVSFDAEDRVGTTVTVDEAYVAQR 418

Query: 423 IGDFPSETDMYHFIL 437
           +       D+  +IL
Sbjct: 419 LASLAGNADLSKYIL 433


>gi|51473515|ref|YP_067272.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str.
           Wilmington]
 gi|62286790|sp|Q68X52|HSLU_RICTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|51459827|gb|AAU03790.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia typhi
           str. Wilmington]
          Length = 450

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/441 (49%), Positives = 320/441 (72%), Gaps = 5/441 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +P +IV+EL+R+I+GQ  AK+AVAIALRNR+RR+++  +LR+E++PKNIL++G 
Sbjct: 10  KDNMGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGS 69

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   +  
Sbjct: 70  TGVGKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIA 129

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFD 180
           V   A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+
Sbjct: 130 VDINAREKAIERILDSLVGKTSSSETREKFKEKVLNGELDDTEIEISVADTTPVGGGSFE 189

Query: 181 IPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           IP   GAS+G+LNL ++  + +GS + K  +M ++     ++ +ES++LID + + + +I
Sbjct: 190 IPCIPGASMGVLNLGDMIGRALGSSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAI 249

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            + EN GIVF+DE DKI +  +       VSREGVQRDLLPL+EG++V+TKYG + TDHI
Sbjct: 250 NLAENDGIVFIDEIDKIASTSNSGAKNAEVSREGVQRDLLPLIEGTTVNTKYGPVKTDHI 309

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DLLPE+QGR P+RV L  L K D   IL + E++LI QY  L+ TE
Sbjct: 310 LFIASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTE 369

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L+FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K ++ID 
Sbjct: 370 EVHLEFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDD 429

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           ++V   +    +  D+  F+L
Sbjct: 430 KFVENQLSKIITNLDLAKFVL 450


>gi|56417066|ref|YP_154140.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222475432|ref|YP_002563849.1| heat shock protein (hslU) [Anaplasma marginale str. Florida]
 gi|56388298|gb|AAV86885.1| heat shock protein [Anaplasma marginale str. St. Maries]
 gi|222419570|gb|ACM49593.1| heat shock protein (hslU) [Anaplasma marginale str. Florida]
          Length = 482

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 47  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 106

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 107 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 166

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 167 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 226

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 227 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 286

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 287 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 345

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 346 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 405

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 406 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 465

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 466 EKLEDISKQMDLSKFIL 482


>gi|313674923|ref|YP_004052919.1| heat shock protein hslvu, atpase subunit hslu [Marivirga tractuosa
           DSM 4126]
 gi|312941621|gb|ADR20811.1| heat shock protein HslVU, ATPase subunit HslU [Marivirga tractuosa
           DSM 4126]
          Length = 462

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 311/463 (67%), Gaps = 27/463 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +P+EIV+ELD+YIIGQ DAKR VAIALRNRWRR   P D++ E++P NIL++G
Sbjct: 1   MNNNLFLTPKEIVAELDKYIIGQNDAKRNVAIALRNRWRRMNTPMDIQGEIVPNNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ ++N+V+ ++++
Sbjct: 61  ATGVGKTEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSVNLVKAAKKE 120

Query: 121 EVREQASINAEERILDALVGKTATSN----------------------TREVFRKKLRDG 158
           EV+E+AS   E+ ILDAL+    ++N                      TRE FR+KLR+G
Sbjct: 121 EVKEKASQAVEDIILDALIPPMKSTNQRPVSTTADNQVPDNDYELNQKTRERFREKLRNG 180

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVG-ILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           E+ D++IDI V   +++       G      ++NL ++ S +M   + KK ++++++   
Sbjct: 181 ELEDRKIDINVKTPANNGMGMVGGGMMDEASMINLQDMLSNMM-PKKNKKRKVTIEEARK 239

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLL 276
            L+ +E  +LIDMD V  ++I+  EN G++F+DE DKI      + G  VSREGVQRDLL
Sbjct: 240 ILIDEEVSKLIDMDEVKEEAIKKAENTGMIFIDEIDKIAKGSGNSSGGDVSREGVQRDLL 299

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V+TKYG I+TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K+DF  
Sbjct: 300 PIVEGSAVNTKYGIIHTDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELDSLTKADFLR 359

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + ++ L  QY  L+K E + L F +D+++ LA++A  +NS V +IGARRLQTVM ++
Sbjct: 360 ILKEPKNALTKQYTALLKAEEVDLQFDDDALEELAEIAYQVNSEVENIGARRLQTVMSKL 419

Query: 397 LEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L ++ F   D       VVI  + V   +     + D+  +IL
Sbjct: 420 LNELLFDIPDKIGPNAKVVITKQMVGEKLDGLVKDKDLSQYIL 462


>gi|315497796|ref|YP_004086600.1| heat shock protein hslvu, atpase subunit hslu [Asticcacaulis
           excentricus CB 48]
 gi|315415808|gb|ADU12449.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis
           excentricus CB 48]
          Length = 432

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 247/433 (57%), Positives = 326/433 (75%), Gaps = 2/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+IIG  DAK+AVA+ALRNRWRR+Q  A +RDE+ PKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRHIIGHADAKKAVAVALRNRWRRKQTDAAIRDEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ AI +V++  R  VR 
Sbjct: 62  GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAILMVKDKSRQGVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEER+LDALVG  A   TR+ FRK+LR+ E+ DKE++I VADT   I  F+IPG 
Sbjct: 122 KAEAQAEERLLDALVGPAAQPATRDSFRKRLRNNELDDKEVEITVADTGGAIGAFEIPGQ 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                +NL E+  K M  GR+K +R++V    P L+ +ESD+L+D D V R+++ + E  
Sbjct: 182 PGN-QINLGEMLQKAM-GGRQKTVRLTVAAAQPILLSEESDKLLDQDAVSREALSLAEQE 239

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 240 GIVFLDEIDKVASRQERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LM TEG+ L F +
Sbjct: 300 HVAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMATEGVTLAFED 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
            +I  +A  A  +N+ V +IGARRL T++ERV+E++SF+A+D   +TV I A+YVR  +G
Sbjct: 360 GAIAEMAAAAAQVNAKVENIGARRLHTIIERVMEELSFTAADQTGQTVTITADYVRERLG 419

Query: 425 DFPSETDMYHFIL 437
           +   + D+  +IL
Sbjct: 420 EVAGDADLSRYIL 432


>gi|121997994|ref|YP_001002781.1| ATP-dependent protease ATP-binding subunit HslU [Halorhodospira
           halophila SL1]
 gi|121589399|gb|ABM61979.1| heat shock protein HslVU, ATPase subunit HslU [Halorhodospira
           halophila SL1]
          Length = 442

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/439 (50%), Positives = 306/439 (69%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+   LR E+ PKNIL++GPTGVGK
Sbjct: 6   MTPREIVQELDKHIVGQGEAKRAVAIALRNRWRRMQVDEPLRSEITPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+ +VRE   + +R +A
Sbjct: 66  TEIARRLARLARAPFIKIEATKFTEVGYVGRDVESIIRDLTDLALKLVREEAMEAMRHKA 125

Query: 127 SINAEERILDALVGKTA-------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+R+LD L+   +        + TRE FR+KLR+GE+ D+EI++EV  +   +   
Sbjct: 126 DRAVEDRLLDTLLPGPSGGGPEDVENRTREKFRQKLRNGELDDREIEVEVQASGPGVDIM 185

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L  LF   MG  R ++ +++V +    L  +E+ +L++ + V  +++Q
Sbjct: 186 APPGMEEMS-NQLQGLFRN-MGQERTQRRKLTVAEAKRVLRDEEAAKLVNEEEVKAEAVQ 243

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            VE  GIVFLDE DK+  R   +G G VSREGVQRDLLPLVEG++VSTK+G + TDHILF
Sbjct: 244 RVEEQGIVFLDEVDKVTKRAEQSGGGDVSREGVQRDLLPLVEGATVSTKHGMVRTDHILF 303

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFHV++P+DL+PE+QGR P+RV L +L   +F  ILT+  S+L+ QY+ LM  EG+
Sbjct: 304 IASGAFHVAKPSDLIPELQGRLPIRVELDALGTEEFVRILTEPSSSLVAQYQALMAAEGL 363

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FT+D +  +A++A  +N    +IGARRL TVMER+LE +S+ A+D   +T  +DA Y
Sbjct: 364 TLEFTDDGVRRIAEIARQVNERTENIGARRLHTVMERLLEQLSYEAADHGGQTRTVDAAY 423

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+     + D+  +IL
Sbjct: 424 VDEHLAGLAEDEDLSRYIL 442


>gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072310|gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock
           protein [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 218/450 (48%), Positives = 311/450 (69%), Gaps = 19/450 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIVSELD++++GQ  AKRAV+IALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I   RE    +VR 
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 120

Query: 125 QASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDI 167
           +A   AE+RILD L+                      + TR+ FRK+LR+G + D+EI++
Sbjct: 121 RAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDDKNTTRQTFRKRLREGALDDREIEL 180

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+A+ +  +     PG   +    +  +FS  +G+ RKK  ++ +++    L+ +E+ +L
Sbjct: 181 ELAEAAPSMEIMAPPGMEEM-TEQIKSMFSG-LGNQRKKARKIKIKEAMKLLIEEEAAKL 238

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ++ + + + +I  VE  GIVFLDE DKI  R       VSR GVQRDLLPLVEG++V+TK
Sbjct: 239 VNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTK 298

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF  ILT T++ L  
Sbjct: 299 YGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTK 358

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L+ TEG+ L+F +  I  LA+++ ++N    +IGARRL TVME++LE+ISF+A + 
Sbjct: 359 QYEALLATEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTAGEA 418

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + ++IDA+YV   +G+   + D+  ++L
Sbjct: 419 GVEGLLIDADYVNERLGELAVDEDLSRYVL 448


>gi|311109413|ref|YP_003982266.1| heat shock protein HslVU, ATPase HslU [Achromobacter xylosoxidans
           A8]
 gi|310764102|gb|ADP19551.1| heat shock protein HslVU, ATPase subunit HslU [Achromobacter
           xylosoxidans A8]
          Length = 444

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/442 (51%), Positives = 306/442 (69%), Gaps = 12/442 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P EIVSELD+YI+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVG
Sbjct: 5   NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I   RE     VR Q
Sbjct: 65  KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124

Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           A   AE+RILDALV               ++ R+ FRK+LR+G+I D EI+IEVA  +  
Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +     PG   +    L  +F+  M   +KK  +M V++ +  ++ +E+ + ++ + +  
Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKPKKMKVREAFKLIVDEEAAKRVNEEDLRT 242

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVFLDE DKI AR    G  VSR+GVQRDLLPLVEG++V+T+YG + TDH
Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF  IL+DT+++L  QY  LM T
Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L+FTE+ +  LA++A  +N T  +IGARRL TVME++L+++SF A+   +K V ID
Sbjct: 363 EDLQLEFTEEGVRRLAELAFEVNETTENIGARRLYTVMEKLLDELSFDATASSDKNVKID 422

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   + +  S  D+  ++L
Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444


>gi|301063904|ref|ZP_07204379.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium
           NaphS2]
 gi|300441979|gb|EFK06269.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium
           NaphS2]
          Length = 468

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/455 (48%), Positives = 311/455 (68%), Gaps = 25/455 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD+YIIGQ  AKR+VAIALRNRWRRQQ+ A+LRDE+ PKNI+++GPTGVGK
Sbjct: 15  LTPREIVCELDKYIIGQDQAKRSVAIALRNRWRRQQVAAELRDEIAPKNIIMMGPTGVGK 74

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA +PF+KVE TKFTE+GYVGR+VE ++RDL ++A+N+ ++  ++ V  +A
Sbjct: 75  TEIARRLARLANSPFLKVEATKFTEVGYVGRDVESMVRDLSELAVNMAKKEEQEIVESRA 134

Query: 127 SINAEERILDALVG------------------------KTATSNTREVFRKKLRDGEISD 162
           +  AEER+LD L+                         +    +TRE  R+ LR G++  
Sbjct: 135 AELAEERLLDILLPKKTEETQEEEEGERDRILEVVKSERDGMPSTREKLRRMLRSGKLDK 194

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +D+EV+ ++  +       G      N+ E+F  +    + KK R+ + +    L ++
Sbjct: 195 RYVDLEVSSSNIPMVEIFSSAGMEEMEFNVKEIFGNMFPQKK-KKRRVKIPEAMEILFQE 253

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           ES RLIDMD V   +I++ E  GI+FLDE DK+   DS +G  VSREGVQRDLLP+VEGS
Sbjct: 254 ESQRLIDMDKVVEKAIRITEQNGIIFLDELDKVAGNDSSHGPDVSREGVQRDLLPIVEGS 313

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V+TKYG I TDHILFIA+GAF+VS+P+DLLPE+QGRFP+RV L SL   DF  IL + +
Sbjct: 314 TVATKYGMIKTDHILFIAAGAFNVSKPSDLLPELQGRFPIRVELDSLTTEDFVRILLEPK 373

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + LI QYK LM TE I L F ++S++A+A++A  +N  + +IGARRL T+ME+++++ISF
Sbjct: 374 NALITQYKALMATEEIELIFEDESVEAIAEMASKVNDRMENIGARRLHTIMEKLVDEISF 433

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            A DL EK+V ID  YV   + D   + ++  +IL
Sbjct: 434 DAPDLDEKSVTIDQPYVTEKLEDILEDENLSRYIL 468


>gi|295698589|ref|YP_003603244.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia
           pediculicola USDA]
 gi|291157288|gb|ADD79733.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia
           pediculicola USDA]
          Length = 445

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/446 (49%), Positives = 306/446 (68%), Gaps = 17/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD YIIGQ+ AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDNYIIGQEKAKRSVAIALRNRWRRMQLNESLRQEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++     ++ + +
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMIHLQSIEKNKNR 122

Query: 126 ASINAEERILDAL----------VGKTATSN----TREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEE+ILD L           G    ++    TR+  R+KLR+GE+ DKEI+IEV+ 
Sbjct: 123 AEEVAEEKILDILSTHIIKNKSSWGDQKENDLKNFTRQSLRRKLRNGELDDKEIEIEVSA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +   I     PG   +    L  +F   +   ++K  +M V++ +  L ++E+ RL++ +
Sbjct: 183 SPMGIEIMAPPGMEEM-TSQLQSMFQN-LAGQKQKSKKMKVKQAFRVL-KEEAARLVNPE 239

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + +I  VE  GIVF+DE DKI  +       VSREGVQRDLLPLVEG +VSTK+G +
Sbjct: 240 ELKQKAIDTVEQNGIVFIDEIDKICRKGHSTNSDVSREGVQRDLLPLVEGCTVSTKHGMV 299

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L  +DF+ ILT+  ++L +QYKE
Sbjct: 300 KTDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTANDFKRILTEPNASLTMQYKE 359

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           LM TEG+ ++FT+D I  +A+VA  +N    +IG+RRL T++ER++ED+SFSA +   +T
Sbjct: 360 LMLTEGLNIEFTQDGISKIAEVAWKVNEKTENIGSRRLHTILERLMEDLSFSADERSGET 419

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ID+ YV  H+ +  S  D+  FIL
Sbjct: 420 IIIDSNYVSSHLDELVSNEDLSRFIL 445


>gi|238650768|ref|YP_002916623.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
 gi|259491379|sp|C4K1X4|HSLU_RICPU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238624866|gb|ACR47572.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
          Length = 450

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|15892357|ref|NP_360071.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str.
           Malish 7]
 gi|21759186|sp|Q92II6|HSLU_RICCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|15619504|gb|AAL02972.1| heat shock protein hslU [Rickettsia conorii str. Malish 7]
          Length = 450

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|229586582|ref|YP_002845083.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia africae
           ESF-5]
 gi|259491378|sp|C3PN30|HSLU_RICAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|228021632|gb|ACP53340.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia africae
           ESF-5]
          Length = 450

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAAISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|34580638|ref|ZP_00142118.1| heat shock protein hslU [Rickettsia sibirica 246]
 gi|28262023|gb|EAA25527.1| heat shock protein hslU [Rickettsia sibirica 246]
          Length = 450

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|255659258|ref|ZP_05404667.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida
           DSM 20544]
 gi|260848713|gb|EEX68720.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida
           DSM 20544]
          Length = 468

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/456 (48%), Positives = 306/456 (67%), Gaps = 27/456 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV ELDRYI+GQ +AKR+VAIALRNRWR +QL   +++E++PKNI+++G TGVGKT
Sbjct: 14  TPREIVEELDRYIVGQDEAKRSVAIALRNRWRSRQLTGAMKEEVIPKNIMMIGSTGVGKT 73

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++R+ R +EV+++A 
Sbjct: 74  EIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEAAVRMIRQERLEEVQDKAK 133

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
             AEERILD  V +   S                            RE  RK+L  GE+ 
Sbjct: 134 EQAEERILDVFVPEPKKSQNPLGRLFGGDDEEKDKPAEEPKKYQAGREWVRKRLEKGELE 193

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D+ I+I+V +T   +              NL ++   +M   R KK +++V +      +
Sbjct: 194 DELIEIDVEETRRPMVGMFSGSSLEGMGDNLQDMIGNIM-PKRHKKRKVTVAQARKIFTQ 252

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +E+ +LIDM+ V  +++++ E  GIVFLDE DK+  + + +G  VSREGVQRD+LP+VEG
Sbjct: 253 EEAGKLIDMEAVAEEAVKVTEYSGIVFLDEIDKVAVKGNSSGADVSREGVQRDILPIVEG 312

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S VSTKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+ 
Sbjct: 313 SQVSTKYGPVRTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELKSLRKEDFERILTEP 372

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ LI QY+ L+ TEGI L F  D+I  +A++A  +N    DIGARRL T++E+VLEDIS
Sbjct: 373 QNALIKQYEALLATEGITLSFKPDAISRIAELACEVNEQAEDIGARRLHTLLEKVLEDIS 432

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A +L +K VVIDA YV   + D     D+  FIL
Sbjct: 433 FRAPELTDKDVVIDAAYVNERLADIVVNRDLSQFIL 468


>gi|152976195|ref|YP_001375712.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189043903|sp|A7GRF9|HSLU_BACCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|152024947|gb|ABS22717.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cytotoxicus
           NVH 391-98]
          Length = 463

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/465 (43%), Positives = 306/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +LP DLRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLPEDLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMMVKV 120

Query: 123 REQASINAEERILDALVG------------------------------KTATSNTREVFR 152
           +++A   A +R+++ LV                                T     R+   
Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQTGFKNPLEMLFGGNQNVNQTSESQDDTEIQKKRQEVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           K+L  G + ++ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 KQLAAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEG++V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGANVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSVD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ L+ QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALVKQYAALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + V I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKVTITPQYVEEKLATIAKNKDVSQFIL 463


>gi|157964396|ref|YP_001499220.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           massiliae MTU5]
 gi|167017228|sp|A8F187|HSLU_RICM5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157844172|gb|ABV84673.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia massiliae
           MTU5]
          Length = 450

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE I+RDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIMRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGSGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVC 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|225677227|ref|ZP_03788220.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590751|gb|EEH11985.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 496

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/438 (53%), Positives = 326/438 (74%), Gaps = 4/438 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G T
Sbjct: 60  LLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  +
Sbjct: 120 GVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKAL 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            ++A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIP
Sbjct: 180 AKKALILAEKTIVNSMVGEDATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIP 239

Query: 183 G--GASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G  G  VG++N++E+  K+   S + K I + V++    L+ +ES+RL+D D + +++I 
Sbjct: 240 GMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAID 299

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFI
Sbjct: 300 LVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFI 358

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + 
Sbjct: 359 ASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVT 418

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV
Sbjct: 419 LEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYV 478

Query: 420 RLHIGDFPSETDMYHFIL 437
           +  +     + D+  FIL
Sbjct: 479 KDKLESISKQPDLSKFIL 496


>gi|311068137|ref|YP_003973060.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           atrophaeus 1942]
 gi|310868654|gb|ADP32129.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           atrophaeus 1942]
          Length = 467

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/463 (42%), Positives = 301/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  LD+YI+GQ DAK+AVA+ALRNR+RR  L   L+DE++PKNIL++GPTGVGK
Sbjct: 6   LTPRQIVDRLDQYIVGQHDAKKAVAVALRNRYRRSLLDEKLKDEIVPKNILMMGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + ++V++QA
Sbjct: 66  TEIARRIAKLVGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKINDVKDQA 125

Query: 127 SINAEERILDALVGKTAT-------------------------------SNTREVFRKKL 155
             NA +RI+  LV                                       R+    +L
Sbjct: 126 EENANKRIVSLLVPGKKKQSGVKNPFEMLFGGNQPNGDEENDSQEEASIEEKRKRMAHQL 185

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
             GE+ D  I +EV +    + +     G     +N+ +  S +M   +KK+ +M+V++ 
Sbjct: 186 AMGELEDHYITVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSSMM-PKKKKRRKMTVREA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRD 274
              L  +E+ +LIDMD V ++++   E  GI+F+DE DKI       +   VSREGVQRD
Sbjct: 245 RKVLTNEEASKLIDMDEVGQEAVLRAEQGGIIFIDEIDKIAKNGGASSSADVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L  L   DF
Sbjct: 305 ILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTVDDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY+ L++TEGI L+F++++I  +A+VA ++N    +IGARRL T++E
Sbjct: 365 VKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           R+LE++SF A D+  + + I  +YV   +G   +  D+  FIL
Sbjct: 425 RLLEELSFEAPDVTMEKITITPQYVEDKLGTIANNKDLSQFIL 467


>gi|15615026|ref|NP_243329.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           halodurans C-125]
 gi|11133072|sp|Q9KA27|HSLU_BACHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|10175083|dbj|BAB06182.1| ATP-dependent Clp protease (heat-shock protein) [Bacillus
           halodurans C-125]
          Length = 464

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/466 (42%), Positives = 295/466 (63%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV  LD+YI+GQ+ AKR+VAIALRNR+RR QL   LRDE+ PKNIL++GPT
Sbjct: 1   MKNVLTPRQIVERLDQYIVGQEGAKRSVAIALRNRYRRFQLEDKLRDEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +V+E +   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVETSVRLVKEEKMKGV 120

Query: 123 REQASINAEERILDALVGKTATS-------------------------------NTREVF 151
           ++QA   A +RI++ LV     +                                 R   
Sbjct: 121 KKQAEEQANQRIVELLVPAKKKTQAYKNPLEMLFGQQQENTDHQETSAEQDTLTERRRRM 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L  GE+ D  + +EV + +    +     G     +N+ E+   +M   ++KK +++
Sbjct: 181 SHQLALGELEDHYVTVEVEEQTPQFFDMLQGSGMEQMGMNMQEMLGNMM-PKKRKKRKLT 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  +E+ +LIDMD V ++++   E  GIVF+DE DKI  +       VSREGV
Sbjct: 240 VREARRVLTEEEAQKLIDMDEVTQEAVSKAEQLGIVFIDEIDKIAGK-GQQSADVSREGV 298

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG ++TDH+LFI +GAFHV++P+DL+PE+QGRFP+RV L +L  
Sbjct: 299 QRDILPIVEGSTVVTKYGPVSTDHMLFIGAGAFHVAKPSDLIPELQGRFPIRVELSNLTV 358

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L+ QY  L++TEGI + FT++++  +A +A  +N    +IGARRL T
Sbjct: 359 DDFVRILVEPDNALLKQYAALLETEGIKIVFTDEAVHKIATIATEVNQETENIGARRLHT 418

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF A D+  + +VI  EYV   +       D+  +IL
Sbjct: 419 LLERLLEDLSFEAPDVNLEEIVITPEYVTEKLAAIAKNRDLSQYIL 464


>gi|149187079|ref|ZP_01865385.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
 gi|148829290|gb|EDL47735.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
          Length = 432

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/433 (54%), Positives = 323/433 (74%), Gaps = 4/433 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L  DLRDE+ PKNIL++GPTG G
Sbjct: 3   NLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLDRDLRDEVTPKNILMIGPTGCG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + +E RR+ VR+ 
Sbjct: 63  KTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKERRREAVRDT 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           AS  A ER+L+ALVG+ A+  TRE FR+++    ++D E++I+V D     SN +IPG  
Sbjct: 123 ASQAAMERLLNALVGENASEATREAFRERIVQNAMNDTEVEIDVKDHPQ--SNMEIPGMP 180

Query: 186 S-VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG+++LS++  K MG    K+ ++ V   +  L+ +E+++ +D D V+R +++  E  
Sbjct: 181 GNVGMIDLSDMLGKAMGKSNLKRRKLKVPDAWDRLVEEEAEKRMDQDDVNRVALENAETN 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASGAF
Sbjct: 241 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASGAF 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HVS+P+D+LPE+QGR P+RV L++L + DF  ILT+T +NL+ QYK L+ TE + LD T+
Sbjct: 300 HVSKPSDMLPELQGRLPIRVELRALTEEDFVRILTETRANLVQQYKALIGTEEVTLDITD 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+I  +A +A  +N +V +IGARRLQTVMER+LEDISF A + + +T+ +DA YVR  + 
Sbjct: 360 DAITEVAKIAARVNESVENIGARRLQTVMERLLEDISFEAEEHKGETITVDAAYVRERLD 419

Query: 425 DFPSETDMYHFIL 437
           D   +TD+  +IL
Sbjct: 420 DLSGDTDLSKYIL 432


>gi|118479051|ref|YP_896202.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418276|gb|ABK86695.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus thuringiensis str. Al
           Hakam]
          Length = 476

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 14  MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 73

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 74  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 133

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 134 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 193

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 194 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 252

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 253 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 311

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 312 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 371

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 372 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 431

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 432 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 476


>gi|114328901|ref|YP_746058.1| ATP-dependent protease ATP-binding subunit HslU [Granulibacter
           bethesdensis CGDNIH1]
 gi|114317075|gb|ABI63135.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Granulibacter bethesdensis CGDNIH1]
          Length = 438

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/434 (54%), Positives = 328/434 (75%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +SPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP  +R+E++PKNIL++GPTG GK
Sbjct: 6   YSPREIVSELDRFIVGQTDAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ ++R++ R  V+ QA
Sbjct: 66  TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEASLTMLRDTSRRNVQAQA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            + AEER+L ALVG+ A ++TR  FR+ LR+GE+ +KEI+I +A   S   + DIPG   
Sbjct: 126 ELAAEERLLTALVGEGAAADTRSHFRRMLRNGELEEKEIEISIAAAPSAPPSVDIPGVPP 185

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
              +NL+E+  K M   R+++ +++V      L R+E+DRL+D D + RD+++  EN GI
Sbjct: 186 GQAINLTEMM-KGMFGNRQQQKKLTVAAARELLQREEADRLLDNDKLGRDAVEHAENNGI 244

Query: 247 VFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           VF+DE DK+ AR +     G  +SREGVQRDLLP++EG++V+TKYG + TDHILFIASGA
Sbjct: 245 VFIDEIDKVCARSTEGGMRGGDISREGVQRDLLPIIEGTTVNTKYGPVKTDHILFIASGA 304

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+++P+DLLPE+QGR P+RV L+ L+++D R IL + E +L+ QY+ L+ TE + LD T
Sbjct: 305 FHLAKPSDLLPELQGRLPIRVELQPLSRADMRRILVEPEHSLLKQYQALLGTEQVDLDIT 364

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+IDALAD+A  +N  V +IGARRL TV+E++LEDISF+A+D   + V +DA  VR  +
Sbjct: 365 DDAIDALADLAAEINDRVENIGARRLHTVLEKLLEDISFTAADRAGELVTVDAALVRDRV 424

Query: 424 GDFPSETDMYHFIL 437
                + D+  FIL
Sbjct: 425 APLAGKADLSRFIL 438


>gi|302392401|ref|YP_003828221.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium
           arabaticum DSM 5501]
 gi|302204478|gb|ADL13156.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium
           arabaticum DSM 5501]
          Length = 467

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/466 (46%), Positives = 309/466 (66%), Gaps = 35/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV +LD+YI+GQ++AK++VA+ALRNR+RR+QL  +L++E+MPKNIL++GPTGVG
Sbjct: 3   ELTPRKIVEQLDKYIVGQEEAKKSVAVALRNRYRRRQLSTELKEEIMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF KVEVTKFTE+GYVGR+VE +IRDLV  AI +V+  R +EV ++
Sbjct: 63  KTEIARRLAKLAQAPFAKVEVTKFTEVGYVGRDVESMIRDLVQTAIRMVKRERMEEVEDK 122

Query: 126 ASINAEERILDALVGKTATSNT---------------------------------REVFR 152
           A   AE+RILD L+      N                                  RE  R
Sbjct: 123 AEKLAEDRILDKLLPLPENENNSNPLGALFGNFGNEENNSSEVEDQEHLKRLKKRREELR 182

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ D+ I+IEV + +S +       G     +N  ++    M   + K+ + S+
Sbjct: 183 EKLRAGELEDRVIEIEVEENNSQMIEVFSGSGVEEMGVNFQDVLGG-MFPNQTKERKASI 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGV 271
           ++    L + E+ +LIDMD V  ++I  VE  GI+FLDE DK+     S +G  VSREGV
Sbjct: 242 KEAREILKQQEAQKLIDMDEVSSEAISRVEESGIIFLDEIDKVAGDNASSSGPEVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TK+G + TDHI FIA+GAFHVS+P DL+PE+QGRFP+RV L SL +
Sbjct: 302 QRDILPIVEGSTVMTKHGPVKTDHIFFIAAGAFHVSKPTDLIPELQGRFPIRVELSSLTE 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            +F+ ILT+ E+ L  QYK L+ TE + ++FTE +I+ LA +A  +N    +IGARRL T
Sbjct: 362 ENFKAILTEPENALTKQYKALLTTEDLEIEFTERAIEELASIAFQINEETENIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+E++LEDISF A ++ E ++ IDAEYV+  + D   + D+  +IL
Sbjct: 422 VLEKLLEDISFEAPEMSEDSIEIDAEYVQDKLSDIVEDKDLSRYIL 467


>gi|190571157|ref|YP_001975515.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018561|ref|ZP_03334369.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357429|emb|CAQ54863.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995512|gb|EEB56152.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 483

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/438 (53%), Positives = 326/438 (74%), Gaps = 4/438 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LR+E++PKNIL++G T
Sbjct: 47  LLDDLPPQKIVKELDRFIIGQNDAKRAVAIALRNRWRRNKVPLPLREEIIPKNILMIGHT 106

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  +
Sbjct: 107 GVGKTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKAL 166

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            ++A   AE+ I++++VG+ AT  +++VFR++LR+ E  D E+ I V ++   +  FDIP
Sbjct: 167 TKKALGLAEKIIVNSMVGEDATEESKKVFRERLRNKEFEDGEVSINVRESKGMLPTFDIP 226

Query: 183 G--GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G  G  +G++N++E+  K+    +K K I + V++    L+ +ES+RL+D D + +++I 
Sbjct: 227 GMPGGQIGVMNVTEIVGKMFNGNKKTKTITVKVKEAREILINEESERLMDEDKIIKEAID 286

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++VSTKYG + TD+ILFI
Sbjct: 287 LVSNEGIVFLDEIDKIAARTEIKG-EVNREGVQRDLLPLLEGTTVSTKYGPVKTDYILFI 345

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + 
Sbjct: 346 ASGAFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVT 405

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+D I+ +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  VID++YV
Sbjct: 406 LEFTDDGIETIAEIAFTVNREVENIGARRLHTVMEKLLDEISFIASEKNSEKFVIDSKYV 465

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  +     + D+  FIL
Sbjct: 466 RDKLESISKQLDLSKFIL 483


>gi|228992557|ref|ZP_04152484.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           pseudomycoides DSM 12442]
 gi|228998605|ref|ZP_04158192.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock3-17]
 gi|229006105|ref|ZP_04163793.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock1-4]
 gi|228755181|gb|EEM04538.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock1-4]
 gi|228761073|gb|EEM10032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides Rock3-17]
 gi|228767191|gb|EEM15827.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           pseudomycoides DSM 12442]
          Length = 463

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/465 (44%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  DLRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEDLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVG------------------------------KTATSNTREVFR 152
           +++A   A +R+++ LV                                T     R    
Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGNQNANQTSETQDDTEIEKKRREVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KKL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 KKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFIAAGAFHMSKPSDLIPELQGRFPIRVELTKLSVD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ L+ QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILVEPDNALVKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|320354504|ref|YP_004195843.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus
           propionicus DSM 2032]
 gi|320123006|gb|ADW18552.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus
           propionicus DSM 2032]
          Length = 469

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/470 (46%), Positives = 303/470 (64%), Gaps = 34/470 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   + +P+E V+ELDRYIIGQ +AKR+VAIALRNRWRRQQ+   LR+E+ PKNI+++G
Sbjct: 1   MKGINSLTPKETVAELDRYIIGQPEAKRSVAIALRNRWRRQQVQPPLREEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL  +A+N+V +    
Sbjct: 61  PTGVGKTEIARRLAHLAQSPFLKVEASKFTEVGYVGRDVESMIRDLTQLAVNMVTKEEEA 120

Query: 121 EVREQASINAEERILDALVGKTAT------------------------------SNTREV 150
            V+E+A+  AEER+LD L+ +T                                  TRE 
Sbjct: 121 GVQEKAAALAEERLLDLLLPRTPGHGAGSSTPTASNVISLGYDGAEGRQEELRGQTTRER 180

Query: 151 FRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           FR+ LR GE+ D+ +++ V A   + +       G      +L E FSK     +K+  +
Sbjct: 181 FREMLRRGELDDRVVELSVSAGGGTPVVEVFSASGMEEMQNSLQEAFSK-FFPKKKQAKK 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVS 267
           M V +    L R+E++RL+D ++V   +I+  E  GI+FLDE DKI +R         VS
Sbjct: 240 MKVPQALEFLKREEAERLVDTESVTEKAIRRTEQSGIIFLDEIDKIASRGGTGSGSPDVS 299

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRDLLP+VEG++V+TKYG + TDHILFIASGAFH+ +P+DL PE+QGRFP+RV+L 
Sbjct: 300 REGVQRDLLPIVEGTTVTTKYGPVKTDHILFIASGAFHLCKPSDLAPELQGRFPIRVNLH 359

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           +L + +F  ILT+  + LI QY  L+ TE I L+F E++I  +A +AV +N    DIGAR
Sbjct: 360 ALGEEEFFRILTEPRNALIKQYTALLATEDIRLEFEEEAIREMARIAVQVNQKTEDIGAR 419

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL TV+ERVL+++SF A D  +    + A+YVR  + D     D+  +IL
Sbjct: 420 RLHTVIERVLDELSFDAPDRDDLAFTVTADYVRRQLTDISENEDLSRYIL 469


>gi|157825563|ref|YP_001493283.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia akari
           str. Hartford]
 gi|166221602|sp|A8GN00|HSLU_RICAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157799521|gb|ABV74775.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str.
           Hartford]
          Length = 450

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/441 (50%), Positives = 320/441 (72%), Gaps = 5/441 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G 
Sbjct: 10  KDHMGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGS 69

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + E
Sbjct: 70  TGVGKTEIARRLAKLTYSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTE 129

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFD 180
           V   A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+
Sbjct: 130 VDINAREQAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFE 189

Query: 181 IPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           IPG  GAS+G+LNL ++  + +G  + K  +M V+     ++ +ES++LID + + + +I
Sbjct: 190 IPGMPGASMGVLNLGDVIGRALGGSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAI 249

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            + EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHI
Sbjct: 250 NLAENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHI 309

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE
Sbjct: 310 LFIASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTE 369

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + + FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ + + ID 
Sbjct: 370 DVYIAFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGRKITIDD 429

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           ++V   +    +  D+  F+L
Sbjct: 430 KFVENQLSKIITNLDLAKFVL 450


>gi|58696800|ref|ZP_00372331.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698623|ref|ZP_00373519.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630856|ref|YP_002727647.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi]
 gi|58534868|gb|EAL58971.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58537009|gb|EAL60157.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592837|gb|ACN95856.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi]
          Length = 496

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/438 (53%), Positives = 326/438 (74%), Gaps = 4/438 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G T
Sbjct: 60  LLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  +
Sbjct: 120 GVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKAL 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            ++A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIP
Sbjct: 180 AKKALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIP 239

Query: 183 G--GASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G  G  VG++N++E+  K+   S + K I + V++    L+ +ES+RL+D D + +++I 
Sbjct: 240 GMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAID 299

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFI
Sbjct: 300 LVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFI 358

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + 
Sbjct: 359 ASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVT 418

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV
Sbjct: 419 LEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYV 478

Query: 420 RLHIGDFPSETDMYHFIL 437
           +  +     + D+  FIL
Sbjct: 479 KDKLESISKQLDLSKFIL 496


>gi|34495857|ref|NP_900072.1| ATP-dependent protease ATP-binding subunit HslU [Chromobacterium
           violaceum ATCC 12472]
 gi|62286852|sp|Q7P112|HSLU_CHRVO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|34101712|gb|AAQ58080.1| heat shock protein hslU [Chromobacterium violaceum ATCC 12472]
          Length = 448

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/452 (48%), Positives = 301/452 (66%), Gaps = 24/452 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD++IIGQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 2   TQMTPQEIVHELDQHIIGQHKAKRAVAIALRNRWRRQQVAEPLRSEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+V+ IIRDLVDVAI   RE+     R 
Sbjct: 62  GKTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVDTIIRDLVDVAIKDTREAAIKRNRT 121

Query: 125 QASINAEERILDALVGKTATSN------------------TREVFRKKLRDGEISDKEID 166
           +A   AEERILD L+ +                       TR+ FRK LR+G+  DKEI+
Sbjct: 122 RAEDAAEERILDVLLPQPRKQPSGFFAEEPAVEEKHEDGATRQKFRKMLREGKFDDKEIE 181

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +E+A  ++ ++    PG        L  +F   +G+G+K+  +M V   + +L+ +E+ +
Sbjct: 182 LEIAAPAAQMNVMAPPGM-EDFASQLQGMFQG-LGAGKKQTAKMKVADAFKQLIDEEAAK 239

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVS 285
           L++ + +  ++++ VE  GIVF+DE DK+ +R  G +G  VSR GVQRDLLPLVEG++VS
Sbjct: 240 LVNEEELKAEALKNVEQNGIVFIDEIDKVTSRGEGHSGADVSRAGVQRDLLPLVEGTTVS 299

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG + TDHILFIASGAF +S+P+DL+PE+QGR P+RV L SL+  DF+ ILT T + L
Sbjct: 300 TKYGMVKTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELSSLSVDDFKAILTSTNACL 359

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY+ L+ TEG+ L F +  I  LA++A  +N    +IGARRL TVME++LE+++F A 
Sbjct: 360 TRQYQALLATEGVELAFEDSGIQRLAEIAWQVNEKTENIGARRLYTVMEKLLEEVAFDAK 419

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                   ID  YV   +G+     D+  ++L
Sbjct: 420 S---GACRIDGAYVDGKLGEVAEREDLARYVL 448


>gi|15617169|ref|NP_240382.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219682475|ref|YP_002468859.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|11132905|sp|P57116|HSLU_BUCAI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802300|sp|B8D899|HSLU_BUCAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|25296055|pir||D84997 heat shock protein hslU [imported] - Buchnera sp. (strain APS)
 gi|10039234|dbj|BAB13268.1| heat shock protein hslU [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|90186501|gb|ABD91523.1| putative heat shock protein hslU [Acyrthosiphon pisum]
 gi|219622208|gb|ACL30364.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|311086301|gb|ADP66383.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086875|gb|ADP66956.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087465|gb|ADP67545.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 443

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/443 (47%), Positives = 299/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R     + + +
Sbjct: 63  KTEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNIKKNKVR 122

Query: 126 ASINAEERILDALVGKTATSNTR-----------EVFRKKLRDGEISDKEIDIEVADTSS 174
                EE+ILD LV     + T            + FRKKLR+G + +KEI+I +  T+ 
Sbjct: 123 VEEIVEEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTTM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEIK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE  GIVF+DE DKI  R   +G  +SREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 KEAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  S P+DL+PE+QGR P++V L++L   DF  ILT+  +++  QYK LM+
Sbjct: 301 HILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT++ I  +A+ A  +N ++ +IGARRL TV+E+++EDISF+ASD +  T+ I
Sbjct: 361 TEGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIEI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           ++ YV  H+    S  D+  FIL
Sbjct: 421 NSNYVEEHLDQLTSNEDLGRFIL 443


>gi|114566380|ref|YP_753534.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|122318542|sp|Q0AYP1|HSLU_SYNWW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|114337315|gb|ABI68163.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 214/466 (45%), Positives = 306/466 (65%), Gaps = 34/466 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F  +PREIV ELD+YIIGQQ+AK+AVAIALRNR+RR+ LP +LR+E+ PKNI+++G TGV
Sbjct: 2   FKLTPREIVEELDKYIIGQQEAKKAVAIALRNRYRRKLLPDELREEIYPKNIIMIGSTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL  APFIKVE +KFTE+GYVGR+V+ ++RDLV+ +I +V++ +   V +
Sbjct: 62  GKTEIARRLARLVKAPFIKVEASKFTEVGYVGRDVDSMVRDLVETSIRLVKQEKMAAVEQ 121

Query: 125 QASINAEERILDALVGKTATSNT---------------------------------REVF 151
           +    AEERI+D L+      +                                  RE+ 
Sbjct: 122 KGRQMAEERIVDILLPFDGRKSKSPKNPFEFLLGSIQERDDVDDESERRRREIGQRREIL 181

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R+K+   E+ D+ I+IEV + +          G     +NL ++   +M   + KK ++S
Sbjct: 182 RQKINRLELEDETIEIEVEEKNPSFMEIFSGSGVEEMGINLQDMLGNLMPRNK-KKRKVS 240

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           + +    L  +ES RL+DMD +HR+ I+  E  GI+FLDE DKI +++S  G  VSR GV
Sbjct: 241 IAEARRILTYEESQRLLDMDEIHREGIKRAEEDGIIFLDEIDKIASKESNYGPDVSRGGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG   TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL K
Sbjct: 301 QRDILPIVEGSTVITKYGPARTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLKK 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D + ILT+  ++LI QY  L+ TE + +DFT ++ID +A+ A  +NS   DIGARRL T
Sbjct: 361 EDLKRILTEPNNSLIKQYIALLSTEKLTMDFTPEAIDYIAERAYEVNSRTEDIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           VME++LED+ F++ D+  + +VID +YV   +     + D+  +IL
Sbjct: 421 VMEKLLEDLLFNSPDMAGEKLVIDIDYVAERLDRIVEDEDLSRYIL 466


>gi|220931601|ref|YP_002508509.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix
           orenii H 168]
 gi|219992911|gb|ACL69514.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix
           orenii H 168]
          Length = 462

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/464 (45%), Positives = 312/464 (67%), Gaps = 31/464 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV +LD+YI+GQ++AK+AVAIALRNR+RR+++ +DL++E++PKNIL++GPT
Sbjct: 1   MKEELTPRQIVKKLDKYIVGQEEAKKAVAIALRNRYRRKKIISDLQEEVIPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLAR+A APFIKVEVTKFTE+GYVGR+VE ++RDLV+ AI +V+  +  +V
Sbjct: 61  GVGKTEIARRLARIASAPFIKVEVTKFTEVGYVGRDVESMVRDLVETAIRMVKSEKMKDV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS--------------------- 161
             +A   A +RI+D ++        R  F     D E +                     
Sbjct: 121 EHKARDLAIDRIVDIILPLPGKKR-RNPFEVLFSDREENLDDVDSDNYTSLKERRKRLRK 179

Query: 162 --------DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
                   D+ I+I V   +  +       G     +N  ++F  +  + + KK ++SV+
Sbjct: 180 RIVNGQLDDQVIEITVESQNPQMFEVFSGAGVEEMGINFQDMFGNIFPAQK-KKRKVSVK 238

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E+ +LIDMD V  ++I+ VEN GI+FLDE DKI  R+SG G  VSREGVQR
Sbjct: 239 EAKEILKQEEAQKLIDMDEVSLEAIKKVENDGIIFLDEIDKIAGRESGKGPEVSREGVQR 298

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL++  
Sbjct: 299 DILPIVEGSTVMTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLSREH 358

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ IL   ++ L  QY+ L++TEGI + FT+++I+ +AD A  +N    +IGARRL T+M
Sbjct: 359 FKQILLQPKNALTKQYEALIETEGIKIKFTDEAIEEIADFAYRVNEQTENIGARRLHTIM 418

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF+A D+  + V ID +YVR  + D   + D+  +IL
Sbjct: 419 EKLLEDVSFNAPDMDVEEVTIDVDYVRNQLADVVQDKDLSKYIL 462


>gi|239826608|ref|YP_002949232.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp.
           WCH70]
 gi|259491373|sp|C5D8V9|HSLU_GEOSW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|239806901|gb|ACS23966.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           WCH70]
          Length = 465

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/466 (43%), Positives = 304/466 (65%), Gaps = 32/466 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MSEALTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEV 120

Query: 123 REQASINAEERILDALVG------------------------------KTATSNTREVFR 152
           +++A   A +R+++ LV                                      R    
Sbjct: 121 KDRAEQQANKRLVELLVPGKQKQTMKNPLELLFGGAQTSQQDTYQTYEDDHIEQKRRQVA 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            +L +G++ D+ + IEV +      +F    G     +N+ +  S  +   R+KK ++ V
Sbjct: 181 WQLANGQLEDEMVTIEVEEQQPMFFDFLQGAGIEQMGMNMQDALSS-LIPKRRKKRKLKV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGV 271
           ++    L  +E+ +LIDMD V +++I++ E  GI+F+DE DKI       +   VSREGV
Sbjct: 240 REARKVLTNEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGQAASSADVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+ 
Sbjct: 300 QRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSV 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ LI QYK L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T
Sbjct: 360 DDFVKILVEPDNALIKQYKALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ME++LED+ F A D+    VVI  +YV   +G+     D+  FIL
Sbjct: 420 IMEKLLEDLLFEAPDITLDEVVITPQYVEQKLGNIVKNKDLSEFIL 465


>gi|219681920|ref|YP_002468306.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471629|ref|ZP_05635628.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254802299|sp|B8D8E2|HSLU_BUCA5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219624763|gb|ACL30918.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
          Length = 443

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/443 (47%), Positives = 300/443 (67%), Gaps = 13/443 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R    ++ + +
Sbjct: 63  KTEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNINKNKVR 122

Query: 126 ASINAEERILDALVGKTATSNTR-----------EVFRKKLRDGEISDKEIDIEVADTSS 174
                EE+ILD LV     + T            + FRKKLR+G + +KEI+I +  T+ 
Sbjct: 123 VEEIVEEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTTM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +G  +K   R+ ++     L  +E+ +LI+ + + 
Sbjct: 183 GVEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEIK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +++I  VE  GIVF+DE DKI  R   +G  +SREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 KEAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF  S P+DL+PE+QGR P++V L++L   DF  ILT+  +++  QYK LM+
Sbjct: 301 HILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALME 360

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ ++FT++ I  +A+ A  +N ++ +IGARRL TV+E+++EDISF+ASD +  T+ I
Sbjct: 361 TEGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIEI 420

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           ++ YV  H+    S  D+  FIL
Sbjct: 421 NSNYVEEHLDQLTSNEDLGRFIL 443


>gi|194333990|ref|YP_002015850.1| ATP-dependent protease ATP-binding subunit HslU [Prosthecochloris
           aestuarii DSM 271]
 gi|194311808|gb|ACF46203.1| heat shock protein HslVU, ATPase subunit HslU [Prosthecochloris
           aestuarii DSM 271]
          Length = 487

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/464 (46%), Positives = 313/464 (67%), Gaps = 32/464 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + +P +IV  LD+YIIGQ +AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTG
Sbjct: 26  TESLTPSQIVDTLDKYIIGQHEAKKSVAIALRNRLRRQSVGEELRDEIMPNNIIMIGPTG 85

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL D A+N+VR  + +EVR
Sbjct: 86  VGKTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVNMVRHEKSEEVR 145

Query: 124 EQASINAEERILDALVGKTATSN------------------------TREVFRKKLRDGE 159
           E+A+   EER+LD L+     S+                        +RE   ++LR G 
Sbjct: 146 EKAAALVEERLLDILLPSVPASSGEDRLSDETANGEALSMEEELNRKSREKMLERLRSGR 205

Query: 160 ISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           + +++I++E++  S+   +  F   G        + +L + +    ++KK R+++ +   
Sbjct: 206 MDERQIEMEISGDSNGGMMQIFGPLGQMEEIGGMMQDLMNGL--PKKRKKRRVTIAEARK 263

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRD 274
            L ++E  +LIDMD+V +++++ VE  GIVF+DE DKI A  SG+G     VSREGVQRD
Sbjct: 264 LLEQEEVQKLIDMDSVVKEAVRKVEESGIVFIDEIDKIAAPTSGSGGKGPDVSREGVQRD 323

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF
Sbjct: 324 LLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEDDF 383

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT  ++ LI QYK LM TEG+ L+FT+DSI  +A  A  +N +V +IGARRL T+M 
Sbjct: 384 YRILTQPKNALIKQYKALMATEGVDLEFTDDSIREIARTAARVNESVENIGARRLHTIMT 443

Query: 395 RVLEDISFSASDL-QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +LE++ F+  D   +  VVID   V   +    S+ D+  +IL
Sbjct: 444 NLLEELMFNIPDKHTDGNVVIDEAVVCGKMDRLVSDRDLSSYIL 487


>gi|218898982|ref|YP_002447393.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus G9842]
 gi|226704516|sp|B7IUI8|HSLU_BACC2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218545017|gb|ACK97411.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus G9842]
          Length = 463

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLASIAKNKDVSQFIL 463


>gi|157828309|ref|YP_001494551.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933015|ref|YP_001649804.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           rickettsii str. Iowa]
 gi|166221604|sp|A8GRL8|HSLU_RICRS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043916|sp|B0BX22|HSLU_RICRO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157800790|gb|ABV76043.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908102|gb|ABY72398.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Rickettsia
           rickettsii str. Iowa]
          Length = 450

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/438 (50%), Positives = 318/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + +V  
Sbjct: 73  GKTEIARRLATLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSRAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|319789318|ref|YP_004150951.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio
           ammonificans HB-1]
 gi|317113820|gb|ADU96310.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio
           ammonificans HB-1]
          Length = 480

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/463 (46%), Positives = 314/463 (67%), Gaps = 36/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR IV ELD+Y++GQ++AK+AVAIALRNRWRRQ+LP ++RDE++PKNI+++GPTGVGK
Sbjct: 22  LTPRRIVEELDKYVVGQREAKKAVAIALRNRWRRQRLPEEMRDEVVPKNIIMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLV++A+N+V+E +  +V E+A
Sbjct: 82  TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVNMVKEEKMAQVEERA 141

Query: 127 SINAEERILDALVGKTAT--------------------------------SNTREVFRKK 154
              A ER+ + +V +                                    + R   +K 
Sbjct: 142 RELAYERLAEYMVPEPKHPQQQSVQNLFDIFFPSPARQKDHDYEAELSRLKDERNRIKKL 201

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L++G++ D+ ++I V   ++   N    GG    I NL ++ S ++   + K  +M V++
Sbjct: 202 LKEGKLDDEIVEIPVTVETTPGINVVGLGG---DISNLQDVLSSILPKPK-KLRKMKVKE 257

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L ++E+ +LIDMD V R++I   EN GI+F+DE DK+ +R+   G  VSREGVQRD
Sbjct: 258 AIRYLTQEEASKLIDMDEVIREAIDRAENQGIIFIDEIDKVASREGARGPDVSREGVQRD 317

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEGS VSTKYG + TDH+LFIA+GAFHV++P+DLLPE+QGRFP+RV LK L K DF
Sbjct: 318 LLPIVEGSKVSTKYGLVRTDHMLFIAAGAFHVAKPSDLLPELQGRFPIRVELKPLTKEDF 377

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L  QYK L++TEG+ L+FT D I+ +A +A   N    +IGARRL TVME
Sbjct: 378 VRILTEPKNALTKQYKALLETEGVELEFTPDGIEEIARIAEEANERAENIGARRLHTVME 437

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LE++SF A +++ + VV+D ++VR  + D   + D+  ++L
Sbjct: 438 KLLEEVSFMAPEMKGQKVVVDRDFVREKLSDIIQDEDLTKYVL 480


>gi|15604188|ref|NP_220703.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia
           prowazekii str. Madrid E]
 gi|11133244|sp|Q9ZDK8|HSLU_RICPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|3860880|emb|CAA14780.1| HEAT SHOCK PROTEIN HSLU (hslU) [Rickettsia prowazekii]
 gi|292571921|gb|ADE29836.1| Heat shock protein HslVU,ATPase subunit HslU [Rickettsia prowazekii
           Rp22]
          Length = 450

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/441 (49%), Positives = 318/441 (72%), Gaps = 5/441 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +P +IV+EL+R+I+GQ  AK+AVAIALRNR+RR+++  +LR+E++PKNIL++G 
Sbjct: 10  KDNMGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGS 69

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   +  
Sbjct: 70  TGVGKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIA 129

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFD 180
           V   A   A ERILD+LVGKT++S TRE F+ K+ +GE+ D EI+I VADT+      F+
Sbjct: 130 VDINAREKAIERILDSLVGKTSSSETREKFKAKVLNGELDDTEIEISVADTTPVGGGGFE 189

Query: 181 IPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           IP   GAS+G+LNL ++  + +G+ + K  +M ++     ++ +ES++LID + + + +I
Sbjct: 190 IPCIPGASMGVLNLGDMIGRALGNSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAI 249

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            + EN GIVF+DE DKI +  +       +SREGVQRDLLPL+EG++V+TKYG + TDHI
Sbjct: 250 NLAENDGIVFIDEIDKIASTSNAGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHI 309

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+++P+DLLPE+QGR P+RV L  L K D   IL + E++LI QY  L+ TE
Sbjct: 310 LFIASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTE 369

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L+FT+ +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K ++ID 
Sbjct: 370 EVHLEFTDAAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDD 429

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           ++V   +    +  D+  F+L
Sbjct: 430 KFVENQLSKIITNLDLAKFVL 450


>gi|224826711|ref|ZP_03699811.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum
           2002]
 gi|224600931|gb|EEG07114.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum
           2002]
          Length = 447

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/451 (47%), Positives = 300/451 (66%), Gaps = 23/451 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P EIV EL+++IIGQ  AKRAVAIALRNRWRRQQ+   L+ E+ PKNIL++GPTGV
Sbjct: 2   TQMTPPEIVHELNKHIIGQDAAKRAVAIALRNRWRRQQVAEPLKSEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDL ++AI   R++    +R 
Sbjct: 62  GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLTEIAIKDTRDAAIKRLRH 121

Query: 125 QASINAEERILDALVGK------------------TATSNTREVFRKKLRDGEISDKEID 166
           +A   AE+RILD L+                       S TR  FRK LR+G++ DKEI+
Sbjct: 122 RAEDAAEDRILDVLLPPARQPAGFFAGEEEAPASKPEDSATRLKFRKMLREGKLDDKEIE 181

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I VA     +     PG        L  +F   +G+G++K  +++V +    ++ +E+ +
Sbjct: 182 INVAAPQGKMEILAPPGM-EDFSSQLQTMFQG-LGAGKQKARKLNVAEALKLVIEEEAAK 239

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ D + ++++Q VE  GIVF+DE DK+ +R  GNG  VSR GVQRDLLPLVEG++V+T
Sbjct: 240 LVNEDEIKQEALQNVEQNGIVFIDEIDKVASRIEGNGADVSRAGVQRDLLPLVEGTTVTT 299

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           KYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL   DFR ILT+T++ L 
Sbjct: 300 KYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLTVDDFRQILTNTDACLT 359

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L+ TEG+ L F +  I  +A++A ++N    +IGARRL TV+E++LE+ISF   D
Sbjct: 360 RQYEALLATEGVELVFADSGIQRMAEIAWHVNEKTENIGARRLYTVIEKLLEEISF---D 416

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +     +DA YV   +       D+  ++L
Sbjct: 417 TRTGRFEVDAAYVDSKLDMLSQREDLARYVL 447


>gi|296133054|ref|YP_003640301.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola sp. JR]
 gi|296031632|gb|ADG82400.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola potens
           JR]
          Length = 467

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 214/466 (45%), Positives = 312/466 (66%), Gaps = 35/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV ELD++I+GQ  AKR+VA+ALRNR+RR++LP +LRDE++PKNI+++GPTGVG
Sbjct: 3   DLTPKQIVEELDKFIVGQHKAKRSVAVALRNRYRRKKLPPELRDEVVPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ +  EV E+
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKQEKMAEVEEK 122

Query: 126 ASINAEERILDALVGKTATS----------------------------------NTREVF 151
           A + AE+RILD L                                           R++ 
Sbjct: 123 ARVMAEKRILDILAPLPEREMGLKNPFEALFGGGQRNDDQAQEQAFTERVNQVQRERDIL 182

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            +KL+ GE+  + I+IEV DT+          G     +N+ ++   ++   RKKK + +
Sbjct: 183 WEKLQKGELEHEYIEIEVEDTNVPTVEVFSGAGVEEMGINIQDILGGIL-PKRKKKRKTT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L   E+ +LIDMD V   +I+  E  GI+FLDE DKI ARD G G  VSR GV
Sbjct: 242 VEEARKILTNQEAQKLIDMDEVISQAIERAEQSGIIFLDEIDKIAARDGGAGPDVSRGGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +
Sbjct: 302 QRDILPIVEGSTVMTKYGAVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLTE 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF+ IL   ++ +I QYK L++TEGI+L FTE+S+D +A +A  +N    +IGARRL T
Sbjct: 362 EDFKQILIAPQNAIIKQYKALLETEGIMLKFTENSLDEIAKIAYTVNEQTENIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI++ A D  +K VVID +YV+  + +     D+  +IL
Sbjct: 422 ILEKLLEDIAYEAPDTDQKVVVIDEKYVQEKLSEVIHNRDLSRYIL 467


>gi|67458908|ref|YP_246532.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis
           URRWXCal2]
 gi|75536651|sp|Q4UM53|HSLU_RICFE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|67004441|gb|AAY61367.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia felis
           URRWXCal2]
          Length = 450

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTKKTLAKMEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +G++ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGKLDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++L+ QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLVKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS+++ K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|228902332|ref|ZP_04066489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 4222]
 gi|228857301|gb|EEN01804.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 4222]
          Length = 463

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|124004895|ref|ZP_01689738.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina
           ATCC 23134]
 gi|123989573|gb|EAY29119.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina
           ATCC 23134]
          Length = 470

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/464 (43%), Positives = 304/464 (65%), Gaps = 34/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ELD+YIIGQ DAK+ VAIALRNRWRR     D+R E++P NIL++G TGVGK
Sbjct: 8   LTPREIVAELDKYIIGQNDAKKQVAIALRNRWRRMNSADDMRQEIVPNNILMIGATGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ AIN+V+ S+R+ V+E+A
Sbjct: 68  TEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAINMVKASKRETVQERA 127

Query: 127 SINAEERILDALVG------------------------------KTATSNTREVFRKKLR 156
           +   EE ILDAL+                               +     TR+ FR+K+R
Sbjct: 128 TEIVEEIILDALIPPVRDASAQNSFTGFTMDVTPDETSSMSKDDQELNEKTRDRFREKIR 187

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +GE+ +++I+I ++           PG   + ++N+ E+ + ++   + KK ++++ +  
Sbjct: 188 NGEMDERKIEINISQNGMGNVGMVGPGMDEMAMMNIQEMINGML-PKKSKKRKVTIAEAR 246

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDL 275
             L+ +E ++LIDMD V  ++++  EN G++F+DE DKI      G+G  VSREGVQRDL
Sbjct: 247 KILLEEEVNKLIDMDEVKEEALKKAENTGMIFIDEIDKIARGSSGGSGPDVSREGVQRDL 306

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGSS++TKYG + +DHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K DF 
Sbjct: 307 LPIVEGSSINTKYGVLKSDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELSSLTKEDFY 366

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY+ ++  EG+ L F +D+++ LA++A  +N  V +IGARRL TVM  
Sbjct: 367 QILKEPKNALTKQYEAMLHAEGVSLAFQDDALEQLAEMAYQINLEVENIGARRLHTVMSH 426

Query: 396 VLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L D  F   D+      +++  + V+  +     + D+  FIL
Sbjct: 427 LLNDFLFDVPDVIGPNAKILVTKDMVQEKLAGLVQDKDLSQFIL 470


>gi|206978534|ref|ZP_03239384.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus H3081.97]
 gi|217961249|ref|YP_002339817.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus
           AH187]
 gi|222097274|ref|YP_002531331.1| ATP-dependent protease ATP-binding subunit hslu [Bacillus cereus
           Q1]
 gi|226704518|sp|B7HLG2|HSLU_BACC7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802297|sp|B9IVB8|HSLU_BACCQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|206743257|gb|EDZ54714.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus H3081.97]
 gi|217067560|gb|ACJ81810.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH187]
 gi|221241332|gb|ACM14042.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus cereus Q1]
 gi|324327726|gb|ADY22986.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 463

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|290968894|ref|ZP_06560431.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781190|gb|EFD93781.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 457

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/458 (47%), Positives = 307/458 (67%), Gaps = 22/458 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T   +P+EIV EL++YI+GQ +AK++VAIALRNRWRR+ LPAD++DE++PKNILL+G
Sbjct: 1   MMGTAELTPKEIVRELNKYIVGQAEAKKSVAIALRNRWRRKHLPADMQDEIIPKNILLIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L GAPFIKVE TK+TE+GYVGR+VEQIIRDLV  A+ +V+E    
Sbjct: 61  PTGVGKTEIARRLAKLVGAPFIKVEATKYTEVGYVGRDVEQIIRDLVTNAVRMVQEQESR 120

Query: 121 EVREQASINAEERILDALVGKTAT--------------------SNTREVFRKKLRDGEI 160
             ++QA   A +RIL     K                       S+ R+   +K+   + 
Sbjct: 121 RFQQQAEEAANKRILQIFWPKKEHAADDDHKESTSCTDSVVSVGSDKRQAMLEKISSHQW 180

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            +KEI+++V+     +    +         N  E+   +M   RKK+ +M+V K      
Sbjct: 181 DEKEIEVKVSPQERPVQGVLMGSSNEELTNNFQEMLGSIM-PKRKKRKKMTVAKAREIFR 239

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLV 279
           ++E ++ +DMD V   +I   E  GIVF+DEFDKI  +   G    VSREGVQRD+LP+V
Sbjct: 240 QEELEKCLDMDVVIEKAITATEQAGIVFIDEFDKIAEKSRGGGSPDVSREGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG++V+TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL   DF+ ILT
Sbjct: 300 EGATVNTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLTAEDFKRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +   +L+ QYK L++T+G+ LDFT + I+ALA+ A  +N    +IGARRL T++E++LED
Sbjct: 360 EPNQSLVKQYKALLQTDGVDLDFTAEGIEALAEYAYRVNLETENIGARRLHTMLEKILED 419

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           I+F+A D+ EKT+ +  E+V   +G     TD+ H+IL
Sbjct: 420 IAFAAPDITEKTIPVTKEFVDEKLGTVVDNTDLSHYIL 457


>gi|58584980|ref|YP_198553.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419296|gb|AAW71311.1| ATP-dependent protease HslU, ATPase subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/438 (53%), Positives = 325/438 (74%), Gaps = 4/438 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P  LRDE++PKNIL++G T
Sbjct: 60  LLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ I RDLVD AI +V+E  R  +
Sbjct: 120 GVGKTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSITRDLVDAAIVLVKEKARKAL 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            ++A   AE+ I++++VG+ AT  +++ +R++LR+ E  D E+ I V ++ S +  FDIP
Sbjct: 180 AKKALNLAEKIIVNSMVGENATEESKKTYRERLRNKEFEDGEVSINVRESKSMLPTFDIP 239

Query: 183 GGAS--VGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G     VG++N++EL  K+   G+K K I + V++    L+ +ES+RL+D D + +++I 
Sbjct: 240 GMPGRQVGVVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDEDKIIKEAID 299

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++VSTKYG + TD+ILFI
Sbjct: 300 LVSNEGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVSTKYGYVKTDYILFI 358

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + 
Sbjct: 359 ASGAFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVT 418

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+D I+ +A++A  +N  V +IGARRL T+ME++L++ISF AS+   +  VID++YV
Sbjct: 419 LEFTDDGIETIAEIAFTVNREVENIGARRLHTIMEKLLDEISFIASEKNGEKFVIDSKYV 478

Query: 420 RLHIGDFPSETDMYHFIL 437
           +  +     + D+  FIL
Sbjct: 479 KDKLESISKQLDLSRFIL 496


>gi|228954105|ref|ZP_04116134.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071327|ref|ZP_04204550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus F65185]
 gi|229081084|ref|ZP_04213594.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock4-2]
 gi|229180105|ref|ZP_04307449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 172560W]
 gi|229191998|ref|ZP_04318968.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 10876]
 gi|228591549|gb|EEK49398.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 10876]
 gi|228603314|gb|EEK60791.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 172560W]
 gi|228702128|gb|EEL54604.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock4-2]
 gi|228711781|gb|EEL63733.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus F65185]
 gi|228805671|gb|EEM52261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 463

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|30263833|ref|NP_846210.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Ames]
 gi|47529257|ref|YP_020606.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49186679|ref|YP_029931.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Sterne]
 gi|49478401|ref|YP_037890.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141658|ref|YP_085170.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L]
 gi|165873314|ref|ZP_02217919.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0488]
 gi|167642029|ref|ZP_02400259.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0193]
 gi|170689657|ref|ZP_02880837.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0465]
 gi|170709355|ref|ZP_02899769.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0389]
 gi|177656000|ref|ZP_02937127.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0174]
 gi|196047759|ref|ZP_03114952.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus 03BB108]
 gi|218904957|ref|YP_002452791.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH820]
 gi|227813263|ref|YP_002813272.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis
           str. CDC 684]
 gi|228928877|ref|ZP_04091909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229092869|ref|ZP_04224003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-42]
 gi|229186068|ref|ZP_04313238.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BGSC 6E1]
 gi|229604413|ref|YP_002868067.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. A0248]
 gi|254683464|ref|ZP_05147324.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. CNEVA-9066]
 gi|254721985|ref|ZP_05183774.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. A1055]
 gi|254735867|ref|ZP_05193573.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Western North America USA6153]
 gi|254739607|ref|ZP_05197301.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Kruger B]
 gi|254759319|ref|ZP_05211344.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Australia 94]
 gi|62286774|sp|Q636J7|HSLU_BACCZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286815|sp|Q6HEY6|HSLU_BACHK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286872|sp|Q81WK6|HSLU_BACAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|226704515|sp|B7JJA7|HSLU_BACC0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802294|sp|C3P5N1|HSLU_BACAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802295|sp|C3L798|HSLU_BACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|30258477|gb|AAP27696.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. Ames]
 gi|47504405|gb|AAT33081.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180606|gb|AAT55982.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. Sterne]
 gi|49329957|gb|AAT60603.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975127|gb|AAU16677.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus cereus E33L]
 gi|164710952|gb|EDR16524.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0488]
 gi|167510009|gb|EDR85425.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0193]
 gi|170125729|gb|EDS94642.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0389]
 gi|170666381|gb|EDT17164.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0465]
 gi|172079899|gb|EDT65007.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           anthracis str. A0174]
 gi|196021407|gb|EDX60121.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus 03BB108]
 gi|218537902|gb|ACK90300.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus AH820]
 gi|227005941|gb|ACP15684.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis
           str. CDC 684]
 gi|228597487|gb|EEK55137.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BGSC 6E1]
 gi|228690491|gb|EEL44274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-42]
 gi|228830684|gb|EEM76289.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229268821|gb|ACQ50458.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis
           str. A0248]
          Length = 463

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|254490675|ref|ZP_05103860.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga
           thiooxidans DMS010]
 gi|224464131|gb|EEF80395.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga
           thiooxydans DMS010]
          Length = 439

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 220/439 (50%), Positives = 301/439 (68%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV ELD+ IIGQQ AK+AVAIALRNRWRR+QL + L+ E+ PKNIL++GPTGVG
Sbjct: 3   SLTPKQIVLELDKRIIGQQAAKKAVAIALRNRWRRKQLESSLQQEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++RE     V+ +
Sbjct: 63  KTEIARRLAALANAPFIKVEATKFTEVGYVGRDVESIIRDLAETAMKLLREKAIQAVKSK 122

Query: 126 ASINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           A   AE+RILDAL      V     S TR+ FRK LR+G++ D+E+++E+      +   
Sbjct: 123 AEDAAEDRILDALLRPARDVETEDDSTTRQRFRKMLREGKLDDREVELELNAPQVGVEIM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             PG   +    L ++F   MGS RK   +++V     +L  +E+ +LI+ + +  + + 
Sbjct: 183 SPPGMEEM-TNQLQDMFQS-MGSQRKTTRKLTVSNALRQLAEEEALKLINEEELKAEVLD 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            VE  GIVFLDE DKI  R  G+G   VSR GVQRDLLPLVEGS+VSTKYG I TDHILF
Sbjct: 241 SVEQNGIVFLDEIDKITGRGEGSGSADVSRAGVQRDLLPLVEGSTVSTKYGMIKTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH+S+P+DL+PE+QGR P+RV L++L   DF  ILT+ +++L  QY  L+ TEG+
Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALTSQDFVRILTEPDASLTEQYVALLATEGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FTE+ I  +A++A  +N    +IGARRL T++ER+LEDIS++A       V +D  Y
Sbjct: 361 ELEFTEEGIQRIAELAWEVNEKTENIGARRLHTMLERLLEDISYNAGSELNFKVTVDRSY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   + +   + D+  +IL
Sbjct: 421 VDQQLAELSQDEDLSRYIL 439


>gi|110597421|ref|ZP_01385708.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340965|gb|EAT59436.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           ferrooxidans DSM 13031]
          Length = 494

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 209/470 (44%), Positives = 311/470 (66%), Gaps = 38/470 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGV
Sbjct: 26  HNLTPNQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVSDELRDEIMPNNIIMIGPTGV 85

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE
Sbjct: 86  GKTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVRE 145

Query: 125 QASINAEERILDALVGKTATS-------------------------------NTREVFRK 153
           +A++  EER+LD L+   A S                                +R    +
Sbjct: 146 KAALLVEERLLDILLPPVAQSQESLDDDAETEGEALLSLSTEEGDPSVEANRRSRRKMLE 205

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMS 211
           +LR G++ D++I+++++  SS      I G     +  +  +   +M     ++KK R+S
Sbjct: 206 RLRSGKLEDRQIEMDISSDSSGGGMMQIFGPLGQ-MEEIGGMMQDLMSGLPRKRKKRRVS 264

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSR 268
           + +    L ++E  +LIDM++V +++I  VE  GIVF+DE DKI A      G G  VSR
Sbjct: 265 IAEARKLLEQEEVQKLIDMESVVKEAINKVEQSGIVFIDEIDKIAAPSTGAGGKGPDVSR 324

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKS
Sbjct: 325 EGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKS 384

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT  ++ LI QY  L+ TEG+ L F+E +I  +A +A  +N +V +IGARR
Sbjct: 385 LTEEDFFLILTQPKNALIKQYTALLATEGVELSFSEGAIREIARIAAKVNESVENIGARR 444

Query: 389 LQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++  +LE++ F+  + + ++ + ID   V+  +    ++ D+  +IL
Sbjct: 445 LHTILTNLLEELMFNIPENVSDEKIEIDEAMVKEKLNHVVADRDLSQYIL 494


>gi|239947566|ref|ZP_04699319.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921842|gb|EER21866.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+ VAIALRNR RR++L  +LR+E++PKNIL++G TGV
Sbjct: 13  MGLTPSQIVNELNRFIVGQEKAKKVVAIALRNRCRRKRLEGNLRNEIVPKNILMIGSTGV 72

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 73  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+     +F+IPG
Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  + +GS + K  +M V+     ++ +ES++LID + + + +I + 
Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252

Query: 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI +  S       +SREGVQRDLLPL+EG++V+TKYG + TDHILFI
Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPMRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F   +I+ +AD A+ +N  V DIGARRL T++E +LEDISF AS++++K + ID ++V
Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKDKKITIDDKFV 432

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 433 ENQLSKIITNLDLAKFVL 450


>gi|229157405|ref|ZP_04285483.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 4342]
 gi|228626132|gb|EEK82881.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 4342]
          Length = 463

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNPNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|229019024|ref|ZP_04175865.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1273]
 gi|228742264|gb|EEL92423.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1273]
          Length = 463

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|225865810|ref|YP_002751188.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus
           03BB102]
 gi|228986972|ref|ZP_04147098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|254802296|sp|C1EP53|HSLU_BACC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225789631|gb|ACO29848.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus
           03BB102]
 gi|228772750|gb|EEM21190.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 463

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|332981426|ref|YP_004462867.1| heat shock protein HslVU, ATPase subunit HslU [Mahella
           australiensis 50-1 BON]
 gi|332699104|gb|AEE96045.1| heat shock protein HslVU, ATPase subunit HslU [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/465 (44%), Positives = 300/465 (64%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             ++P+EIV ELD+YIIGQ  AK+AVA+ALRNR+RR  LP ++R+E+MPKNI+++GPTGV
Sbjct: 1   MEYTPKEIVKELDKYIIGQHKAKKAVAVALRNRYRRNLLPQEMREEIMPKNIIMMGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI +V+  +  EV +
Sbjct: 61  GKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVEVAIRMVKNQKMSEVAD 120

Query: 125 QASINAEERILDALVGKTATSNT--------------------------------REVFR 152
           +A   AEER+LD L+      N+                                R   +
Sbjct: 121 RAKQLAEERLLDVLLPPRRKRNSGKNPLEAFFGGQGAEDKEDEESETLIDNSADGRLRMK 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + L  GE+  + I+IEV D +          G     +N+ ++F  +    + KK R++V
Sbjct: 181 EMLDAGELDGRYIEIEVQDNAVSGMGIFSAIGMDDLAINMQDMFGNLF-PKKTKKRRVTV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++      ++E+ +LIDMD V  +++   E  GI+F+DE DK+  R+ G G  VSREGVQ
Sbjct: 240 KEARRIFEQEEAQKLIDMDEVTEEALNKAEQEGIIFIDELDKVAGREGGAGPDVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEG++V TKYG + TD++LFIA+GAFHV++ +DL+PE+QGRFPV V L SL++ 
Sbjct: 300 RDILPIVEGTTVMTKYGPVKTDYMLFIAAGAFHVAKVSDLIPELQGRFPVLVQLDSLSQQ 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT  ++ LI QYK LM  + + L+FT+D+ID +A +A  +N    +IGARRL TV
Sbjct: 360 DFKQILTQPQNALIKQYKALMSADNLELEFTDDAIDEIARMAYVINENNENIGARRLHTV 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           MER+LEDIS+         +++D  YV+  + +   + D+  +IL
Sbjct: 420 MERLLEDISYEMPVSGGNEIIVDKAYVQGVLKETVQDKDISKYIL 464


>gi|229031459|ref|ZP_04187459.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1271]
 gi|229174495|ref|ZP_04302027.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus MM3]
 gi|228609055|gb|EEK66345.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus MM3]
 gi|228729748|gb|EEL80728.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1271]
          Length = 463

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|163941567|ref|YP_001646451.1| ATP-dependent protease ATP-binding subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|229013012|ref|ZP_04170177.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides DSM 2048]
 gi|229061432|ref|ZP_04198777.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH603]
 gi|229134636|ref|ZP_04263446.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST196]
 gi|229168568|ref|ZP_04296291.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH621]
 gi|229486073|sp|A9VT67|HSLU_BACWK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|163863764|gb|ABY44823.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           weihenstephanensis KBAB4]
 gi|228614974|gb|EEK72076.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH621]
 gi|228648897|gb|EEL04922.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST196]
 gi|228717855|gb|EEL69503.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH603]
 gi|228748266|gb|EEL98126.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           mycoides DSM 2048]
          Length = 463

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/465 (44%), Positives = 305/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLVENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGNQNSNQTSDAQEDDEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ I IEV +  S + +     G     +N  +    +M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEVISIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSIM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSAD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL TV
Sbjct: 359 DFVKILIEPDNALIKQYTALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|301055319|ref|YP_003793530.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI]
 gi|300377488|gb|ADK06392.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 463

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGIQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|291286265|ref|YP_003503081.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883425|gb|ADD67125.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 439

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/439 (47%), Positives = 316/439 (71%), Gaps = 9/439 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            ++P++IV ELD+Y++GQ++AK+AVA+A+RNR+RR QLP  L+DE+ PKNI+L+GPTGVG
Sbjct: 3   EYTPKKIVDELDKYVVGQKNAKKAVAVAMRNRYRRLQLPKSLQDEISPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA+L+ +PFIKVE +K+TE+GYVGR+VE ++RDLV++++++VRE ++  V ++
Sbjct: 63  KTEVARRLAKLSRSPFIKVEASKYTEVGYVGRDVESMVRDLVEISVSLVREEKKASVIDK 122

Query: 126 ASINAEERILDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           A IN +ER+LD L+  T       S TRE  R KL  GE+ ++ +++EV D+   +  F 
Sbjct: 123 AKINTKERLLDLLLPPTTGYAEQDSGTREKLRVKLEAGELDERTVEVEVDDSPPQVEVFT 182

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G   +G   LS++   +  S + +K +M + +  P L + E++RLIDMD V   + + 
Sbjct: 183 NMGIEDMG-SGLSDMMKNMFPSKK-RKRKMKISEAKPILEQQETNRLIDMDDVKDIATER 240

Query: 241 VENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GI+FLDE DKI   +S    G  VSREGVQRDLLP+VEGS+V+TKYG + TDHILF
Sbjct: 241 VEQSGIIFLDEIDKICVSNSSGTKGGDVSREGVQRDLLPIVEGSTVNTKYGMVRTDHILF 300

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IA+GAFH+++P DL+PE+QGRFP+RV L+SL   +F  IL + E++L  QY  L+  +G+
Sbjct: 301 IAAGAFHIAKPTDLIPELQGRFPIRVELESLTAEEFVRILKEPENSLTRQYTALLGADGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D I  +A++A  LN T+ +IGARRL T++E++LE++S+ A +++ K VV+DA Y
Sbjct: 361 ELSFTDDGICRIAEMADELNKTLENIGARRLHTIVEKLLEEVSYEAPEVESKGVVVDAAY 420

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H+ D   + D+  ++L
Sbjct: 421 VDEHLKDIVEDRDLSRYVL 439


>gi|229098298|ref|ZP_04229245.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-29]
 gi|229104391|ref|ZP_04235060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-28]
 gi|228679089|gb|EEL33297.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-28]
 gi|228685196|gb|EEL39127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock3-29]
          Length = 463

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|47570330|ref|ZP_00240975.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus
           G9241]
 gi|47552995|gb|EAL11401.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus
           G9241]
          Length = 463

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 303/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E     V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVNV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|228940917|ref|ZP_04103476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973846|ref|ZP_04134422.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228785871|gb|EEM33874.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818753|gb|EEM64819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 463

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + ++ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|258514512|ref|YP_003190734.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778217|gb|ACV62111.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 465

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/464 (45%), Positives = 302/464 (65%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+ V+ELD+YI+GQ  AK++V+IALRNR+RR +L  D+RDE++PKNIL++GPTGVG
Sbjct: 3   DLTPRQTVAELDKYIVGQNKAKKSVSIALRNRYRRSKLSEDMRDEILPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL+RL  APFIK+E TKFTE+GYVGR+VE +IRDL++++I +VR  +   V E+
Sbjct: 63  KTEIARRLSRLVQAPFIKIEATKFTEVGYVGRDVESMIRDLLEISIRMVRREKMSLVEER 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------------REVFRK 153
           A   AEERI++ L    A                                    RE  R+
Sbjct: 123 AQKIAEERIVELLAPMPAQEKQPRNPLEMLFGGNTQNEEESKSQQQYKKRIGFERETLRE 182

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  GE+  + ++IEV D  S +       G     +N+ ++        +KKK R++V 
Sbjct: 183 KLSRGELEQEFVNIEVEDNGSPMLEVFSGSGMEEIGINVQDVLGG-FFPKKKKKRRVTVA 241

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L + E+  LIDMD V   +I+  E  GI+FLDE DKI  +DS  G  VSR GVQR
Sbjct: 242 EARKILTQQEAQNLIDMDEVTSQAIKRAEEQGIIFLDEIDKIAGKDSSGGPDVSRGGVQR 301

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TD++LFIA+GAFH+S+P+DLLPE+QGRFP+RV L+SL+++D
Sbjct: 302 DILPIVEGSTVMTKYGPVKTDYMLFIAAGAFHISKPSDLLPELQGRFPIRVELESLSEAD 361

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY EL+ TEG+ + F+++S+  +A +A  +N    +IGARRL T++
Sbjct: 362 FLQILTEPRNALIKQYTELLATEGVKIKFSQNSLVEIAKIAYTVNMQTENIGARRLHTIL 421

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED SF A ++  +++ ID +YVR  + D     D+  +IL
Sbjct: 422 EKLLEDYSFEAPEISGQSIEIDEDYVRYKLKDVLLNEDLSRYIL 465


>gi|229162765|ref|ZP_04290722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus R309803]
 gi|228620647|gb|EEK77516.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus R309803]
          Length = 463

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEELRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|292670831|ref|ZP_06604257.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541]
 gi|292647452|gb|EFF65424.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541]
          Length = 464

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 219/456 (48%), Positives = 308/456 (67%), Gaps = 27/456 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV ELD+YI+GQ +AKR+VA+ALRNRWR +QL A+LRD+++PKNIL++G TGVGKT
Sbjct: 10  TPREIVVELDKYIVGQHEAKRSVAVALRNRWRSRQLDAELRDDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR+ + +EV+E+A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRQQKIEEVQEKAE 129

Query: 128 INAEERILDALVGKTATSNT-------------------------REVFRKKLRDGEISD 162
            NAEER++D  V     S+                          RE  RK+LR GE+ D
Sbjct: 130 ENAEERLIDVFVPVQKKSSNPLGSLFSSEQEEKIEAQEPPKYQAGREWVRKRLRSGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
             I+I+V +++  +              NL  +  K +   R +K +++V +       +
Sbjct: 190 DLIEIDVEESARPMGGMFAGSSLESMSDNLQSMIGK-LVPKRHRKRKVTVNQARKIFAAE 248

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEG 281
           E+D+L+DMD V  ++++  E  GIVFLDE DK+      + G  +SREGVQRD+LP+VEG
Sbjct: 249 EADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSSGHSTGADISREGVQRDILPIVEG 308

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+ 
Sbjct: 309 STVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTEP 368

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ LI QY  L+  EG+ L F ED++  LA++A  +N    DIGARRL T++E++LE++S
Sbjct: 369 KNALIKQYSALLGVEGVSLHFEEDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLEEVS 428

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+A DL+EK +VID  YV   + D   + D+  FIL
Sbjct: 429 FNAPDLKEKEIVIDTAYVDRCLADIAGDHDVSRFIL 464


>gi|83816415|ref|YP_445764.1| ATP-dependent protease ATP-binding subunit [Salinibacter ruber DSM
           13855]
 gi|83757809|gb|ABC45922.1| heat shock protein HslVU, ATPase subunit HslU [Salinibacter ruber
           DSM 13855]
          Length = 481

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/472 (46%), Positives = 311/472 (65%), Gaps = 40/472 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ  P D+RDE++P NI+++GPTGVG
Sbjct: 10  DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V +  R+EV+++
Sbjct: 70  KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129

Query: 126 ASINAEERILDALVGKTAT---------------------------------SNTREVFR 152
           A   AEERILD L+                                      + TRE FR
Sbjct: 130 ARELAEERILDILIPPDDDTQSQAGDGASDEPGFTVSDTDDAEAEGEQTSLRARTREKFR 189

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            KL  G++ D+EI+IEV   S  +     P G     +NL ELF  + G  ++K  R++V
Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGVNLEELFGNLGGGQKRKTRRVTV 249

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-----DSGNGIGVS 267
           ++    L ++E+ +LIDMD V  D+++ V+  GIVF+DE DK+ +      + G G GVS
Sbjct: 250 EEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGVS 309

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L 
Sbjct: 310 RQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVELN 369

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           +L++ DF  ILT  ++ L+ QY+ L ++E + ++F ++ +  LA +A  +N+ V +IGAR
Sbjct: 370 NLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGAR 429

Query: 388 RLQTVMERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL TV+  +LED+ F   +       + IDA+ VR  +    S  D+  +IL
Sbjct: 430 RLHTVLTTLLEDLLFDVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481


>gi|254995241|ref|ZP_05277431.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma
           marginale str. Mississippi]
          Length = 480

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/437 (53%), Positives = 330/437 (75%), Gaps = 5/437 (1%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TG
Sbjct: 46  TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 105

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V 
Sbjct: 106 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 165

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +QA  ++EE IL+ LVG  A S  +  FR++LR GE  D EI I V +  +   +FD+PG
Sbjct: 166 KQARKSSEEIILNCLVGVDA-SEAKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224

Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +
Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA
Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH+++P+DLLPE+QGR P+RV LK L + D   ILT+ ESNL+ QY+ LM+TEG+ +
Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FTED I A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR
Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + D+  FIL
Sbjct: 464 EKLEDISKQMDLSKFIL 480


>gi|260886592|ref|ZP_05897855.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260863735|gb|EEX78235.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 466

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/458 (48%), Positives = 310/458 (67%), Gaps = 29/458 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL   ++D+++PKNIL++G TGVGKT
Sbjct: 10  TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+
Sbjct: 70  EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 129

Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159
             AEERILD  V +   S                              RE  RK+L  GE
Sbjct: 130 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 189

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           +  + I+IE+ D+   +              NL ++ + +M   ++KK ++SV       
Sbjct: 190 LEKEVIEIEIEDSGKPMVGMFAGSSLESMGDNLQDMMANLM-PKKQKKRKVSVAAARKLF 248

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            ++E+ +L+DM+ V   +I+  E  GIVFLDE DK+  +  G+G  VSREGVQRD+LP+V
Sbjct: 249 QQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILPIV 308

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ ILT
Sbjct: 309 EGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRILT 368

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+   +IGARRL T++E++LED
Sbjct: 369 EPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLLED 428

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A +++EK V +DA YV   + D     D+  FIL
Sbjct: 429 LSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 466


>gi|325108994|ref|YP_004270062.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces
           brasiliensis DSM 5305]
 gi|324969262|gb|ADY60040.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces
           brasiliensis DSM 5305]
          Length = 459

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/450 (46%), Positives = 313/450 (69%), Gaps = 18/450 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           TF  +PREIV+ LD++I+GQ DAKRAVAIALRNR+R +QL   +R E+ PKNI+++GPTG
Sbjct: 12  TFRSTPREIVAALDKHIVGQADAKRAVAIALRNRYRWRQLDESVRQEITPKNIIMMGPTG 71

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA L GAPFIKVE TK+TE+GY GR+VE +IRDLV+ AI +VR+ +R+EVR
Sbjct: 72  VGKTEITRRLAALTGAPFIKVEATKYTEVGYYGRDVESMIRDLVEAAITLVRDKKREEVR 131

Query: 124 EQASINAEERILDALVGKTATSNT---------------REVFRKKLRDGEISDKEIDIE 168
           ++A    E+RILD L+     S +               RE FR+ LR G++ ++E++++
Sbjct: 132 DKAEERVEDRILDLLLPAQPASWSPDVKAEDTENRHSRNREKFREMLRKGQLEEREVELK 191

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S +  F   G   +  +++  +F K M   + ++ ++ + +    L+  ES+ L+
Sbjct: 192 VEQKGSSMPMFSNVGMEQME-MDVQNMFEKFM-PKKTQQRKVPISEARKILLDQESEALL 249

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVSTK 287
           D D +  ++I++ ++ GIVF+DE DKI     G+    VSR+GVQRDLLP+VEG++V TK
Sbjct: 250 DKDAIQDEAIRLAQDSGIVFIDEIDKICGPQEGSKSADVSRQGVQRDLLPIVEGTTVQTK 309

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YGS+ T+++LFIA+GAFH SRP+DL+PE+QGRFP+RV L  L + DF  ILT+ +++L  
Sbjct: 310 YGSVKTEYMLFIAAGAFHRSRPSDLMPELQGRFPIRVELIDLTRDDFVRILTEPKTSLTE 369

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK+L+  +G+ ++FT+D I+ALAD+A ++N +  +IGARRL T++ER+LEDISFSA   
Sbjct: 370 QYKQLLAIDGVTIEFTQDGIEALADIAFHVNQSTQNIGARRLHTILERLLEDISFSAPAD 429

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              T+ +D +YVR  + +   + D+  FIL
Sbjct: 430 DLMTLTVDGKYVRHQLQEIAHDEDLSKFIL 459


>gi|295399804|ref|ZP_06809785.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111684|ref|YP_003990000.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y4.1MC1]
 gi|294978207|gb|EFG53804.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216785|gb|ADP75389.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp.
           Y4.1MC1]
          Length = 465

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/466 (43%), Positives = 303/466 (65%), Gaps = 32/466 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR  L   LRDE++PKNIL++GPT
Sbjct: 1   MAEALTPRQIVEQLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKERKMNEV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFR------------------------------ 152
           +++A   A +R+++ LV        +  F                               
Sbjct: 121 KDRAEQQANKRLVELLVPGKQKQTMKNPFELLFGGVQTPQHDTNQAYEDEHIEQRRRQVA 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            +L +G++ D+ + IEV +      +F    G     +N+ +  +  +   R+KK ++ V
Sbjct: 181 WQLANGQLEDEIVTIEVEEQQPMFFDFLQGAGIEQMGMNVQDALNS-LIPKRRKKRKLKV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGV 271
           ++    L+ +E+ +LIDMD V +++I++ E  GI+F+DE DKI       +   VSREGV
Sbjct: 240 REARKVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGQVASSADVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L  L+ 
Sbjct: 300 QRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSV 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL +  + LI QY+ L+ TEGI L+F++D+I  +A+VA  +N T  +IGARRL T
Sbjct: 360 DDFVKILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ME++LED+ F A D+    VVI  +YV   +G      ++  FIL
Sbjct: 420 IMEKLLEDLLFEAPDITLDKVVITPQYVEQKLGGIVKNKNLSEFIL 465


>gi|169830788|ref|YP_001716770.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637632|gb|ACA59138.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 464

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 215/465 (46%), Positives = 309/465 (66%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PR+IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP DLR+E+MPKNIL++GPTGV
Sbjct: 1   MELTPRQIVAELDKYIVGQEEAKRAVAVALRNRYRRARLPEDLREEVMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +VR  R +EV  
Sbjct: 61  GKTEIARRLARLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVRSERLNEVEA 120

Query: 125 QASINAEERILDALVGKTATSN--------------------------------TREVFR 152
           +A+  AEERI++ L                                         RE  R
Sbjct: 121 RAARLAEERIIELLAPFPQQETGGRNPLEMLLGTVRPDPEIDDRHKQRLRRVEFERETLR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            KL  GE+ ++ ++IEV D  +         G     +NL+++   +    +KK+ +++V
Sbjct: 181 TKLERGELENEYLEIEVEDRPTSTLELFSGQGVEEMGINLNDVLGHIF-PKKKKRRKVTV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L + E+ +L+D + V  + I+  E  GI+FLDE DKI  R++G G  VSR GVQ
Sbjct: 240 AEARKILTQQEAQKLVDNEEVVTEGIRRAEESGIIFLDEIDKIAGREAGAGPDVSRGGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP++EGS+V TKYG + TDH+LFIA+GAFH+SRP+DL+PE+QGRFP+RV LK+L + 
Sbjct: 300 RDILPIIEGSTVVTKYGPVRTDHMLFIAAGAFHMSRPSDLIPELQGRFPIRVELKNLTEE 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+ ++ LI QY  L+ TEGI L+F++ S+  +A +A  +N    +IGARRL TV
Sbjct: 360 DFLQILTEPQNALIKQYTALLATEGIKLEFSKYSLVEIAKIAYTVNDQTENIGARRLHTV 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ER+LE+ISF+A D+++K VVID +YVR  + +     D+  +IL
Sbjct: 420 LERLLEEISFAAPDIEDKHVVIDEQYVREKLSEIVRREDLSRYIL 464


>gi|288942671|ref|YP_003444911.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium
           vinosum DSM 180]
 gi|288898043|gb|ADC63879.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium
           vinosum DSM 180]
          Length = 442

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/440 (49%), Positives = 308/440 (70%), Gaps = 12/440 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+ IV+ELD++I+GQ DAKRAVAIALRNRWRR Q+   +R E+ PKNIL++GPTGVGKT
Sbjct: 5   TPQRIVAELDKHIVGQSDAKRAVAIALRNRWRRAQIEEPMRSEITPKNILMIGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDL D+ + + RE    ++ + A 
Sbjct: 65  EIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLADIGVKMAREQEMAKLADLAE 124

Query: 128 INAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             AEERILD L+   +          +S TRE  R KLR G++ D+EI+I+V+     + 
Sbjct: 125 AAAEERILDVLLPPPSDFEEDSRSTVSSATREKLRTKLRSGDMDDREIEIQVSAAPLGVE 184

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               PG   +    L  LF   +G  R K+ ++ ++     L  +E+ + ++ + +   +
Sbjct: 185 IMAPPGMEEMS-NQLQGLFQN-LGQSRTKRRKLRIRDARKLLKDEEAAKRVNDEEMKLRA 242

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++ VE  GIVF+DE DK+  R+  +G+ VSREGVQRDLLPLVEGS+VSTK+G++ TDHIL
Sbjct: 243 LENVEQNGIVFIDEIDKVAKREGTSGVDVSREGVQRDLLPLVEGSTVSTKHGAVRTDHIL 302

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+ +++L  QYK L+ TEG
Sbjct: 303 FIASGAFHLSKPSDLIPELQGRLPIRVELKALSTDDFVRILTEPDASLTDQYKALLATEG 362

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+FTED I  +A++A  +N    +IGARRL TV+ER+LED+S++A++L   TV I+A 
Sbjct: 363 VNLEFTEDGIRRIAEIAWQVNEKTENIGARRLHTVLERLLEDVSYNATELDRVTVTINAA 422

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YV  ++ D  ++ D+  +IL
Sbjct: 423 YVDQNMADLAADEDLSRYIL 442


>gi|256828892|ref|YP_003157620.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578068|gb|ACU89204.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium
           baculatum DSM 4028]
          Length = 446

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 219/446 (49%), Positives = 308/446 (69%), Gaps = 18/446 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELD+YI+GQ  AKR VAIALRNRWRR+QL  +L +E+ PKNIL++GPTGVGK
Sbjct: 4   LTPREIVSELDKYIVGQTQAKRMVAIALRNRWRRRQLDPELAEEIAPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LAG+PFIKVE TKFTE+GYVGR+VE IIRDL+++ +N+VR+     VR +A
Sbjct: 64  TEIARRLAKLAGSPFIKVEATKFTEVGYVGRDVESIIRDLMEIGVNLVRQEEEASVRIKA 123

Query: 127 SINAEERILDALVGK---------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
            ++AEER+LD L+                  A  +TRE  R+  R G++ D+ +++EVA 
Sbjct: 124 EVSAEERLLDLLLPTKPLESAGIDYIGPESQAEGSTREKLRQLWRAGKLDDRMVEVEVA- 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T   +    +PG   +  + + ++FSKV    +K K        Y  L++ E +RLIDMD
Sbjct: 183 TGGGVQVMGVPGMEGME-MQMQDMFSKVFPKKKKTKKVAVKS-AYDILIQSECERLIDMD 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            VH  + + V+  GIVFLDE DKI   +S     VSREGVQRDLLP+VEGS+V+TKYG +
Sbjct: 241 KVHETARERVQESGIVFLDEIDKICGANSSGKADVSREGVQRDLLPIVEGSTVNTKYGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            +DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L +L K DF  ILT+ ++ L +QYK 
Sbjct: 301 RSDHILFIAAGAFHMSKPSDLVPELQGRFPLRVELSALTKEDFYRILTEPKNALTVQYKA 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + + +T++++  +A  A  +N    +IGARRL T+ME+++ D+SF A D+++ T
Sbjct: 361 LLGTEKVEITYTDEALLEIARFAQKINEETENIGARRLYTIMEKIVSDLSFDAPDMEQAT 420

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID +YV   + D   + D+  +IL
Sbjct: 421 VTIDKDYVAKALLDVQEDRDLTRYIL 446


>gi|288553070|ref|YP_003425005.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           pseudofirmus OF4]
 gi|288544230|gb|ADC48113.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus
           pseudofirmus OF4]
          Length = 464

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/465 (42%), Positives = 300/465 (64%), Gaps = 31/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  N +P++IV  L++YI+GQ+ AK++VAIALRNR+RR  L   L++E+ PKNIL++GPT
Sbjct: 1   MKTNLTPKQIVERLNQYIVGQEGAKKSVAIALRNRYRRSLLEDKLKEEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ I++E + + V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRILKEEKMEGV 120

Query: 123 REQASINAEERILDALVGKTATSNT------------------------------REVFR 152
           +E+A  +A ER+++ LV      +T                              R    
Sbjct: 121 KEEALRHANERLVELLVPSNKKQSTYKNPFEMLFNQPGQQQPDDSNGEEEGMKEQRRRMA 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            +L  GE+ D+ + IEV + +    +     G     +N+ ++    M   ++KK +M V
Sbjct: 181 HQLALGELEDRIVTIEVEEQTQQFMDMFQGAGMEQMGMNMQDMLGS-MIPKKRKKRKMPV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L  +E+ +LIDMD V + +++  E  GI+F+DE DK+  + SG    VSREGVQ
Sbjct: 240 SEARNVLAEEEAQKLIDMDEVTQLAVERAEQLGIIFIDEIDKVAGKSSGQSADVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS++ TKYG++ TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK+L   
Sbjct: 300 RDILPIVEGSTIVTKYGAVKTDHILFIGAGAFHIAKPSDLIPELQGRFPIRVELKNLTVD 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ L+ QY  L++TEGI + FT+D++  +A +A  +N    +IGARRL T+
Sbjct: 360 DFVRILVEPDNALLKQYSALLQTEGIKVTFTDDAVRKIATIATEVNQDTENIGARRLHTM 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A+D+  + +VI  EYV   +       D+  +IL
Sbjct: 420 LEKLLEDLSFEAADITLEEIVITPEYVEEKLATIAKNRDLSQYIL 464


>gi|147677585|ref|YP_001211800.1| ATP-dependent protease ATP-binding subunit HslU [Pelotomaculum
           thermopropionicum SI]
 gi|189043913|sp|A5D2W8|HSLU_PELTS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146273682|dbj|BAF59431.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 465

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 216/465 (46%), Positives = 304/465 (65%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR IV ELD+YI+GQ++AK+AVAIALRNR+RR++LP D +DE+MPKNIL++GPTGVG
Sbjct: 3   ELTPRRIVEELDKYIVGQKNAKKAVAIALRNRYRRKKLPEDFKDEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ +   V ++
Sbjct: 63  KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVEGMVRDLVETSIRMVKQEKMAMVEDR 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------------REVFRK 153
           A   AEE+I++ L                                         RE+ R+
Sbjct: 123 AQKMAEEKIIELLAPYPVQQTAARNPLELLFGAARQAEQTDKNQEQRIKRIDFEREMLRE 182

Query: 154 KLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KL  GE+ ++ ++IEV D+   +   F   GG     +NL ++   +    + K  R++V
Sbjct: 183 KLARGELENEYLEIEVEDSKPPMLEIFTASGGMEEMGVNLQDMLGGLFPKKKHK-RRVTV 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L + E+ +LIDMD V   +I+  E  GI+FLDE DKI  R  G G  VSR GVQ
Sbjct: 242 REARKILTQQEAQKLIDMDEVTAAAIKRAEEDGIIFLDEIDKIAGR-EGYGPDVSRGGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL   
Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELESLTCE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT+  + LI QY EL+ TEG+ + FTE+S+  +A +A  +N    +IGARRL T+
Sbjct: 361 DFQQILTEPRNALIKQYTELLATEGVKVKFTENSLVEIAKIAYTVNEQTENIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LEDISF A +L  K +VID E V   +G+     D+  +IL
Sbjct: 421 LEKLLEDISFEAPELTGKEIVIDREIVLEKLGELAKNKDLSRYIL 465


>gi|218234543|ref|YP_002368630.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus
           B4264]
 gi|228922583|ref|ZP_04085883.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228960045|ref|ZP_04121709.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047515|ref|ZP_04193105.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH676]
 gi|229111300|ref|ZP_04240853.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-15]
 gi|229129105|ref|ZP_04258078.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-Cer4]
 gi|229146400|ref|ZP_04274771.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST24]
 gi|229152028|ref|ZP_04280223.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus m1550]
 gi|296504324|ref|YP_003666024.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           BMB171]
 gi|226704517|sp|B7HDV2|HSLU_BACC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|218162500|gb|ACK62492.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus B4264]
 gi|228631377|gb|EEK88011.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus m1550]
 gi|228637033|gb|EEK93492.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST24]
 gi|228654342|gb|EEL10207.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-Cer4]
 gi|228672076|gb|EEL27367.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-15]
 gi|228723762|gb|EEL75117.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH676]
 gi|228799561|gb|EEM46514.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228837012|gb|EEM82353.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296325376|gb|ADH08304.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           BMB171]
          Length = 463

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + ++ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|294507661|ref|YP_003571719.1| Heat shock protein HslU [Salinibacter ruber M8]
 gi|294343989|emb|CBH24767.1| Heat shock protein HslU [Salinibacter ruber M8]
          Length = 481

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/472 (46%), Positives = 311/472 (65%), Gaps = 40/472 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ  P D+RDE++P NI+++GPTGVG
Sbjct: 10  DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V +  R+EV+++
Sbjct: 70  KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129

Query: 126 ASINAEERILDALVGKTAT---------------------------------SNTREVFR 152
           A   AEERILD L+                                      + TRE FR
Sbjct: 130 ARELAEERILDILIPPDDDTQSRAGDGASDEPGVTVSDTDDAEAEGEQTSLRARTREKFR 189

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            KL  G++ D+EI+IEV   S  +     P G     +NL ELF  + G  ++K  R++V
Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGVNLEELFGNLGGGQKRKTRRVTV 249

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-----DSGNGIGVS 267
           ++    L ++E+ +LIDMD V  D+++ V+  GIVF+DE DK+ +      + G G GVS
Sbjct: 250 EEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGVS 309

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L 
Sbjct: 310 RQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVELN 369

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           +L++ DF  ILT  ++ L+ QY+ L ++E + ++F ++ +  LA +A  +N+ V +IGAR
Sbjct: 370 NLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGAR 429

Query: 388 RLQTVMERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL TV+  +LED+ F   +       + IDA+ VR  +    S  D+  +IL
Sbjct: 430 RLHTVLTTLLEDLLFDVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481


>gi|148260411|ref|YP_001234538.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum
           JF-5]
 gi|326403603|ref|YP_004283685.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum
           AIU301]
 gi|146402092|gb|ABQ30619.1| heat shock protein HslVU, ATPase subunit HslU [Acidiphilium cryptum
           JF-5]
 gi|325050465|dbj|BAJ80803.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum
           AIU301]
          Length = 439

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/434 (56%), Positives = 326/434 (75%), Gaps = 4/434 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++PREIVSELDR+I+GQQDAKRAVAIALRNRWRRQQLP  LR+E++PKNIL++GPTG GK
Sbjct: 7   YTPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQLPEGLREEVVPKNILMIGPTGCGK 66

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV+V+I ++R+  R  V+ +A
Sbjct: 67  TEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVEVSITMLRDMSRKGVQARA 126

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGA 185
            + AE+R+L ALVG+ A+S TR  FR+ LRDGE+ +KEID++V++   ++    D+PG  
Sbjct: 127 ELAAEDRLLTALVGEGASSETRNRFRRMLRDGEMEEKEIDVDVSEAPPNVIGQMDMPGMP 186

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             G +NL ++  K M   +  + RM+V      L R+E+DRL+D + +  D+    E +G
Sbjct: 187 PGGAINLGDMM-KSMFGRQHGRKRMTVAAARAALEREEADRLLDNEQLTADARLHAETHG 245

Query: 246 IVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           IVFLDE DKI AR      G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA
Sbjct: 246 IVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 305

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+ E +L+ QY  LMKTE + L FT
Sbjct: 306 FHVAKPSDLLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDLHFT 365

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D++DA+A +A ++N  V +IGARRL TV+ER+LE+ISF+A+D   +TV +DA  V   +
Sbjct: 366 DDAVDAVAALAADINDRVENIGARRLATVLERLLEEISFAATDRAGETVTVDAALVNDKV 425

Query: 424 GDFPSETDMYHFIL 437
               +  D+  FIL
Sbjct: 426 APLAARGDLGRFIL 439


>gi|51246547|ref|YP_066431.1| ATP-dependent protease ATP-binding subunit [Desulfotalea
           psychrophila LSv54]
 gi|62286794|sp|Q6AJQ6|HSLU_DESPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|50877584|emb|CAG37424.1| probable ATP-dependent protease, ATP-binding subunit HslU
           [Desulfotalea psychrophila LSv54]
          Length = 457

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/458 (47%), Positives = 322/458 (70%), Gaps = 22/458 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M ++ + +P+E ++ELDRYI+GQ  AKR+VAIALRNRWRRQQ+P+ LR+E+ PKNI+++G
Sbjct: 1   MTISSSLTPKETLAELDRYIVGQAAAKRSVAIALRNRWRRQQVPSPLREEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDLV++AI++V++  + 
Sbjct: 61  PTGVGKTEIARRLASLAQSPFIKVEASKFTEVGYVGRDVESMIRDLVELAISMVKDEEKK 120

Query: 121 EVREQASINAEERILDALVGKT-------------------ATSNTREVFRKKLRDGEIS 161
            +   A  NAE+RILD L+  T                   A S+T+E FR+ LRDG++ 
Sbjct: 121 RIEGLAEANAEDRILDLLLPPTPVHSESSVDLLPASADVSAAGSSTKEKFRQMLRDGKLD 180

Query: 162 DKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           ++E+++EV + + + +       G      N+ + FS+ M   + K+ +M V      L 
Sbjct: 181 EREVEVEVTETSQAPMVEVMGVSGMDDMQSNIQDAFSR-MFPKKTKQSKMKVPDALDVLT 239

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLV 279
           ++E ++L+DM+ V +++++  E  GIVFLDE DK+ ++  S +G  VSREGVQRDLLP+V
Sbjct: 240 KEEMEKLVDMEMVLKEALRRTEQSGIVFLDEIDKVASKGGSSHGPEVSREGVQRDLLPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG++VSTKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL K +F  ILT
Sbjct: 300 EGATVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLGKDEFVRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + E+ L  QY  L+ TEG+ L F +++I+ +A +AV +N +  +IGARRL TV+ERVL+ 
Sbjct: 360 EPENALTKQYIALLATEGVTLRFEDEAIEEIATIAVQVNESTEEIGARRLHTVVERVLDV 419

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A + +E   V+ A+YVR  + +   + D+  +IL
Sbjct: 420 LSFDACEREESEFVVTAQYVRDQLSEIAEDQDLSRYIL 457


>gi|269958525|ref|YP_003328312.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
 gi|269848354|gb|ACZ48998.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
          Length = 483

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/435 (52%), Positives = 330/435 (75%), Gaps = 4/435 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SPR+I  ELDR+I+GQ++AK+AVA ALR+RWRR ++P  LRDE++PKNIL++G TGVG
Sbjct: 50  DLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTGVG 109

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E  R  V +Q
Sbjct: 110 KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKIVAKQ 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183
           A  ++EE IL+ LVG  A+  T+  FR++LR GE  D EI I V +  +   +FD+PG  
Sbjct: 170 ARKSSEEIILNCLVGVDASEETKSTFRERLRAGEFEDSEISISVKENKNVQHSFDVPGMP 229

Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           G+ VGI+N++E+  K++G  ++ K ++ +V++    L+ +E+++LID D + R+++ +  
Sbjct: 230 GSQVGIMNINEIVQKMLGGNKQFKTLKTTVREAREILLDEETEKLIDEDKIVREALHIAS 289

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIASG
Sbjct: 290 NEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIASG 348

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH+++P+DLLPE+QGR P+RV L+ L++ D   ILT+ ESNL+ QY+ LM+TEG+ ++F
Sbjct: 349 AFHLAKPSDLLPELQGRLPIRVELQPLSRDDLIRILTEPESNLLRQYRALMETEGVNVEF 408

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TE+ + A+A++A  +N  V +IGARRL T++E+++EDIS+SAS+ + KT +ID  +V+  
Sbjct: 409 TENGVLAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENRGKTYIIDEGHVKEK 468

Query: 423 IGDFPSETDMYHFIL 437
           + D   + D+  FIL
Sbjct: 469 LEDISKQMDLSKFIL 483


>gi|317129214|ref|YP_004095496.1| heat shock protein HslVU, ATPase HslU [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474162|gb|ADU30765.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           cellulosilyticus DSM 2522]
          Length = 465

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/466 (43%), Positives = 301/466 (64%), Gaps = 32/466 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PR+IV +L+++I+GQ  AK++VA+ALRNR+RR QL   LR+E+ PKNIL++GPT
Sbjct: 1   MSETLTPRQIVEKLNQFIVGQDKAKKSVAVALRNRYRRSQLDEGLREEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ +I IV+E +   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRIVKEEKMARV 120

Query: 123 REQASINAEERILDALVGKTATS-------------------------------NTREVF 151
           + QA  NA  R++  LV                                     + R   
Sbjct: 121 KVQAERNANHRLVALLVPTQKKESNYRNPLEMLFQGNQTEDQDTEDEREEESVKDRRRRV 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            ++L +GE+ ++ + +EV +  S+  +     G     +N+ E+   +M   +KKK +++
Sbjct: 181 TQQLANGELEEEYVTVEVDEQQSNFLDMFSGSGMEQMGMNMQEMLGGMM-PKKKKKRKLT 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LIDM+ V +D++   E  GI+F+DE DK+  +     + VSREGV
Sbjct: 240 VKEARKVLTVDEAQKLIDMEEVTQDAVSKAEQLGIIFIDEIDKVAGKSQQQSVDVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V TKYG + TDHILF+A+GAFH S+P+DL+PE+QGRFP+RV L SL  
Sbjct: 300 QRDILPIVEGSTVVTKYGPVKTDHILFVAAGAFHFSKPSDLIPELQGRFPIRVELSSLTV 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL D ++ LI QY+ L++TEGI L F++D+I  +A +A  +N    +IGARRL T
Sbjct: 360 EDFVRILVDPDNALIKQYQALLETEGIKLKFSDDAIYKIALIATEVNEETENIGARRLHT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF AS++    VVI +EYV   + D     D+  +IL
Sbjct: 420 ILEKLLEDLSFEASEVTLDEVVITSEYVEEKLQDVAKNRDLSQYIL 465


>gi|325295312|ref|YP_004281826.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065760|gb|ADY73767.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 477

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/461 (47%), Positives = 312/461 (67%), Gaps = 35/461 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+P+EIV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP ++RDE+ PKNI+++GPTGVGK
Sbjct: 22  FTPKEIVKELDKYIVGQHEAKKAVAIALRNRWRRQRLPEEMRDEVAPKNIIMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +V+E + + V E+A
Sbjct: 82  TEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVTMVKEEKMETVMERA 141

Query: 127 SINAEERILDALVGKTATSNT------------------------------REVFRKKLR 156
              A +R+ + +V +  TS                                R   +K L+
Sbjct: 142 RELAYDRLAEIMVPEPQTSQQSIQNLFDVFFSPQKNLNQDLEKEQSRLKDERNRIKKLLK 201

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +G++ ++ ++I V   +  I+   I G     + NL ++ S ++   +K +     ++  
Sbjct: 202 EGKLDEEVVEIAVTVETPGINVIGIGG----DMANLQDMLSSILPKPKKMRKMKV-KEAL 256

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+ +LIDMD V R++I  VEN GIVF+DE DK+ A+  G G  VSREGVQRDLL
Sbjct: 257 RYLTQEEAQKLIDMDEVVREAIDRVENQGIVFIDEIDKVAAKSGGKGPDVSREGVQRDLL 316

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS VSTKYG + TDHILFIA+GAFH+++P+DLLPE+QGRFP+RV LK L K DF  
Sbjct: 317 PIVEGSKVSTKYGLVRTDHILFIAAGAFHIAKPSDLLPELQGRFPIRVELKPLTKEDFVR 376

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ L  QYK L+ TEG+ ++FT D I+ +A +A   N+   +IGARRL TV+E++
Sbjct: 377 ILTEPKNALTKQYKALLGTEGVEIEFTPDGIEEIARIAEEANTKAENIGARRLHTVLEKL 436

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LE+ISF+A  ++ + ++ID EYVR  + +     D+  +IL
Sbjct: 437 LEEISFNAPSMKGEKILIDREYVRNKLENIIESEDLTKYIL 477


>gi|85859270|ref|YP_461472.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophus
           aciditrophicus SB]
 gi|85722361|gb|ABC77304.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 460

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/459 (48%), Positives = 308/459 (67%), Gaps = 26/459 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + + +P EIV +LD++IIGQ DAKRAVAIALRNRWRRQ +P +LRDE+ PKNI+++GPTG
Sbjct: 3   SNSLTPAEIVEKLDQHIIGQADAKRAVAIALRNRWRRQNVPDELRDEIAPKNIIMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++  +PF+KVE +KFTE+GYVGR+VE +IRDLVD+A+N+VRE  +++V 
Sbjct: 63  VGKTEIARRLAKIDNSPFLKVEASKFTEVGYVGRDVESMIRDLVDLAVNMVREEEQEKVL 122

Query: 124 EQASINAEER------------------------ILDALVGKTATSNTREVFRKKLRDGE 159
            +A+  AEER                        + +         +TRE  R+ L DG+
Sbjct: 123 ARAAEIAEERLLDLLLPPKPVERNVDEMMADHSQLPEKSEQAKPYDSTREKLRRLLHDGK 182

Query: 160 ISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           ++ + +D+E+    S+ +       G     LNL E+F  ++   + K  R++V +    
Sbjct: 183 LNGRYVDLELTETRSAPMIEIFSSSGVEDLGLNLKEMFGNMLPQKK-KISRVNVTEALEI 241

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  +E+ RL+DMD V R ++  VE  GI+FLDE DK+V  D+ +G  VSREGVQRDLLP+
Sbjct: 242 LTEEEAQRLVDMDKVTRTALDRVEQSGIIFLDEIDKVVGSDTPSGPDVSREGVQRDLLPI 301

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+T+YG + TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L SL K +F  IL
Sbjct: 302 VEGSNVNTRYGMVRTDHILFIAAGAFSSSKPSDLIPELQGRFPIRVELDSLGKEEFIRIL 361

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            +  + LI QY E+M TEG+ L FT+DSI  +ADVA  +N    +IGARRL T+ME +LE
Sbjct: 362 KEPNNALIKQYTEMMATEGVSLFFTDDSIAEIADVAAVVNERTENIGARRLYTIMEILLE 421

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           DISF+A  L  + VVID +YV   + D   + D+  +IL
Sbjct: 422 DISFNAPGLSGQKVVIDEQYVEDKLCDIIEDEDLSRYIL 460


>gi|194336304|ref|YP_002018098.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308781|gb|ACF43481.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 496

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 215/470 (45%), Positives = 311/470 (66%), Gaps = 40/470 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ +  DLRDE+MP NI+++GPTGVG
Sbjct: 29  NLTPNQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQHVSDDLRDEIMPNNIIMIGPTGVG 88

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  R +EVRE+
Sbjct: 89  KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSERSEEVREK 148

Query: 126 ASINAEERILDALVGKTATSN--------------------------------TREVFRK 153
           A +  EER+LD L+   A+S                                 +R    +
Sbjct: 149 AVLLVEERLLDILLPPVASSRNAESDDESSAEEGVTESPAADEHDKSLEVNRRSRRKMLE 208

Query: 154 KLRDGEISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +LR+G++ D++I++++   +    +  F   G        + +L S +    ++KK R+S
Sbjct: 209 RLRNGKLEDRQIEMDITGDAPGGMMQVFGPLGQMEEIGGIMQDLMSGL--PRKRKKRRVS 266

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSR 268
           + +    L ++E  +LIDMD+V +++I  VE  GIVF+DE DKI    SG+G     VSR
Sbjct: 267 IAEARKILEQEEVQKLIDMDSVVKEAINKVEQSGIVFIDEIDKIATPSSGSGSKGPDVSR 326

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKS
Sbjct: 327 EGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKS 386

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT  E+ LI QY  L+ TEG+ L F++ +I  +A +A  +N +V +IGARR
Sbjct: 387 LTEEDFYLILTQPENALIKQYSALLATEGVDLTFSDGAIREIARIAARVNESVENIGARR 446

Query: 389 LQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T+M  +LE++ F+  +   ++ V ID   V+  +    ++ D+  +IL
Sbjct: 447 LHTIMTNLLEELMFNIPENFSDERVEIDETMVKEKLNHVVADRDLSQYIL 496


>gi|30021917|ref|NP_833548.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           14579]
 gi|62286870|sp|Q819X7|HSLU_BACCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|29897473|gb|AAP10749.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus ATCC 14579]
          Length = 463

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 304/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + ++ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKLLSNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463


>gi|332187394|ref|ZP_08389132.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           S17]
 gi|332012555|gb|EGI54622.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           S17]
          Length = 428

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/432 (55%), Positives = 313/432 (72%), Gaps = 5/432 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ IV+ LD +IIGQ DAKRAVA+A+RNRWRRQ+L ADLRDE+ PKNIL++GPTG GK
Sbjct: 1   MTPKAIVAALDAHIIGQADAKRAVAVAMRNRWRRQRLGADLRDEVTPKNILMIGPTGCGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RR  V+++A
Sbjct: 61  TEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRVAVKDKA 120

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              A  R+LDALVGK ++  TRE FR + RDG +   EI+IE+    +         GA+
Sbjct: 121 EEAAMNRLLDALVGKDSSQATREAFRLRFRDGHLDQTEIEIELEQAPAMPFEIP---GAA 177

Query: 187 VGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             ++NLSE+  K  G G+  K+ +++V   + +L+ +E+D+ +D D V R ++   E  G
Sbjct: 178 PQMINLSEMMGKAFGGGQPLKRRKLTVGAAWTKLVEEEADKRLDQDEVSRAALADAEANG 237

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           IVFLDE DKI   D   G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH
Sbjct: 238 IVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHILFIASGAFH 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           V++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L  QYK L+ TEG+ + FTED
Sbjct: 297 VAKPSDLLPELQGRLPIRVELKALTEGDFVAILSDTKASLPAQYKALIGTEGVEISFTED 356

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            I A+A +A  +N+ V +IGARRLQTVME++LEDISF A D Q  T+ IDA YV   +  
Sbjct: 357 GIAAIARIAAEVNAQVENIGARRLQTVMEKLLEDISFEAEDRQGTTLTIDAAYVDSQLSA 416

Query: 426 FPSETDMYHFIL 437
               TD+  F+L
Sbjct: 417 VARNTDLSRFVL 428


>gi|312792642|ref|YP_004025565.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179782|gb|ADQ39952.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 465

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/465 (46%), Positives = 313/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 2   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 62  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121

Query: 125 QASINAEERILDALVGKTATSNT-------------------------------REVFRK 153
           +A    E+RIL+ L+ +  +                                  RE+ R+
Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILRE 181

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M+++
Sbjct: 182 KLRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIR 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 241 EAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 301 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEED 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+
Sbjct: 361 FKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVV 420

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 421 EKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|148269541|ref|YP_001244001.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           petrophila RKU-1]
 gi|166221614|sp|A5IJQ2|HSLU_THEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|147735085|gb|ABQ46425.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           petrophila RKU-1]
          Length = 463

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTATSN----------------------------TREVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ ++EI+IE+ +T S       PG   +GI  ++ +FS ++   +KKK +M V
Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGIE-ITNMFSGML-PKQKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VV+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463


>gi|222099123|ref|YP_002533691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga
           neapolitana DSM 4359]
 gi|254802319|sp|B9KBC9|HSLU_THENN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|221571513|gb|ACM22325.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga
           neapolitana DSM 4359]
          Length = 463

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/465 (47%), Positives = 315/465 (67%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVRELDKYIVGQTEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKMK 120

Query: 121 EVREQASINAEERILDALVGKTA---------------------TSNTREVFRKKLRDGE 159
           EV E+A    EERILDALV ++                      T   R  FR K  +  
Sbjct: 121 EVEERAKELVEERILDALVPESRAVPAITNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 160 ISDKEIDIEVAD-------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  ++E  +       T+S       PG   +G + +S +FS ++   RKKK +M V
Sbjct: 181 ERLRRGELEDEEIEVEIEETASPFMGIFGPGMEDLG-IEISNMFSGML-PKRKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S +G  VSR+GVQ
Sbjct: 239 SEARKVLLPMEAEKLIDMDKVIQEALDRAQNRGIIFIDEIDKIAGKESASGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VVIDAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKKVVIDAEYVRKRLERIVQDEDLSAYIL 463


>gi|78188754|ref|YP_379092.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           chlorochromatii CaD3]
 gi|78170953|gb|ABB28049.1| Heat shock protein HslU [Chlorobium chlorochromatii CaD3]
          Length = 495

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/470 (45%), Positives = 307/470 (65%), Gaps = 39/470 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IVS+LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 27  NLTPSQIVSQLDKYIIGQKDAKKSVAIALRNRLRRQSVSDELRDEIMPNNIIMIGPTGVG 86

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE 
Sbjct: 87  KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVALVRSEKSEEVREA 146

Query: 126 ASINAEERILDALVGK--------------------------------TATSNTREVFRK 153
           A+I  EERILD L+                                       TR+   +
Sbjct: 147 AAIFVEERILDILIPPIVANQHTNDEEQEEQQEEGQEEQSPSDQKKLAEMNRRTRKKMVE 206

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM--GSGRKKKIRMS 211
           +LR G++ D++I+++V+   S      I G     +  +  L   +M     ++KK R++
Sbjct: 207 RLRSGKLEDRQIELDVSGNDSPGGMMQIFGPLGH-MEEIGSLMQDLMSGMPRKRKKRRVT 265

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSR 268
           + +    L ++E  +LIDM++V +++I  VE  GIVF+DE DKI +      G G  VSR
Sbjct: 266 IAEARKLLEQEEVQKLIDMESVIKEAINKVEQSGIVFIDEIDKIASPTTGAGGKGPDVSR 325

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFH+++P+DL+PE+QGRFP+RV LKS
Sbjct: 326 EGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHLAKPSDLIPELQGRFPIRVELKS 385

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT  ++ LI QY  ++ TEG+ L FTE +I  +A +A  +N  V +IGARR
Sbjct: 386 LTEDDFYLILTQPDNALIKQYSAMLATEGVTLHFTEGAIREIARIAAQVNENVENIGARR 445

Query: 389 LQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T+M  +LE++ F+  +   +  V ID + VR  +    ++ D+  +IL
Sbjct: 446 LHTIMTNLLEELMFNIPENFSDDNVEIDEDMVRNKLNQVVADRDLSQYIL 495


>gi|15643288|ref|NP_228332.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           maritima MSB8]
 gi|281411740|ref|YP_003345819.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           naphthophila RKU-10]
 gi|11133192|sp|Q9WYZ2|HSLU_THEMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|4981035|gb|AAD35607.1|AE001728_8 heat shock protein HslU [Thermotoga maritima MSB8]
 gi|281372843|gb|ADA66405.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga
           naphthophila RKU-10]
          Length = 463

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/465 (49%), Positives = 319/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTATSN----------------------------TREVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAMPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ D+EI+IE+ +T S       PG   +GI  ++ +FS ++   RKKK +M V
Sbjct: 181 EKLRKGELEDEEIEIELEETVSPFMGIFGPGMEDLGIE-ITNMFSGML-PKRKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDFILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK VV+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463


>gi|46579878|ref|YP_010686.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|62286833|sp|Q72C17|HSLU_DESVH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|46449294|gb|AAS95945.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234121|gb|ADP86975.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris RCH1]
          Length = 441

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/440 (47%), Positives = 299/440 (67%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L   LRDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+     VR +A
Sbjct: 64  TEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRARA 123

Query: 127 SINAEERILDALVGKTA------TSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISN 178
              AEER+LD L+ ++         +TR+  R   R G + D+E+D+EV +      +  
Sbjct: 124 EAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMDI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           F +PG  S+G     +L  K     R+K  +M +++ +  L+ +E+ RL+D D V   + 
Sbjct: 184 FAMPGMESMG-NQFRDLMGKAF-PARRKMRKMKLREAWNLLVDEEASRLLDQDKVVDIAR 241

Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + VE  GI+F+DE DK+ + +       +SREGVQRDLLP+VEGS V+TKYG + TDHIL
Sbjct: 242 ERVEQTGIIFIDELDKVASGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGMVRTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH S+P+DL+PE+QGRFP+RV L  L + +F  ILT+  + L  QY  L+ TEG
Sbjct: 302 FIAAGAFHFSKPSDLIPELQGRFPLRVELDPLGRDEFYRILTEPHNALTRQYAALLATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + + FT+D +  +A  A  +N    +IGARRL T+MER+L DISF A D   + V +DA 
Sbjct: 362 VTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGEHVTVDAA 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YVR H+ D   + D+  +IL
Sbjct: 422 YVRTHLEDVRVDKDLSRYIL 441


>gi|110639364|ref|YP_679573.1| ATP-dependent protease ATP-binding subunit HslU [Cytophaga
           hutchinsonii ATCC 33406]
 gi|122966584|sp|Q11QT3|HSLU_CYTH3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|110282045|gb|ABG60231.1| ATP-dependent hsl protease, ATP-binding subunit (heat shock
           protein) [Cytophaga hutchinsonii ATCC 33406]
          Length = 464

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/459 (45%), Positives = 303/459 (66%), Gaps = 30/459 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIV+ELD+YIIGQ DAKR VAIALRNRWRR    AD+R E+MP NILL+GPTGVGK
Sbjct: 8   LTPTEIVAELDKYIIGQHDAKRNVAIALRNRWRRMHADADMRKEIMPNNILLIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF KVE +KFTE+GYVGR+VE ++RDLV+ A+N+V+  +++EV+ + 
Sbjct: 68  TEIARRLAKLADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVKTQKKEEVKIKV 127

Query: 127 SINAEERILDALVGKTAT--------------------------SNTREVFRKKLRDGEI 160
           S   E+ +LD L+    +                            TRE+FR+K+R GE+
Sbjct: 128 SQVVEDILLDLLIPPVKSTGMGFKTASTQSIDTNEIPDNDQELNERTRELFREKIRSGEL 187

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            +++++I V      +            ++N+ E+   +M   + KK ++S+ +    L+
Sbjct: 188 DERKVEINVQQQGPGVGVVGG-AMDEASMMNIQEMIGNMM-PKKTKKRKLSIAEARKILL 245

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +ES +LIDMD V  ++I+  EN GI+F+DE DK+ +   GNG  VSREGVQRDLLP+VE
Sbjct: 246 EEESAKLIDMDDVKDEAIRKTENMGIIFIDEIDKVASSKKGNGPDVSREGVQRDLLPIVE 305

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V+TKYG+++TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL ++DF  IL +
Sbjct: 306 GSAVNTKYGTVHTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEADFYHILKE 365

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY+ L+ +E + ++F +D++ A++++A  LN  V +IGARRL TVM  +L ++
Sbjct: 366 PKNALTRQYQALLSSENVNIEFHDDALKAISEIAFELNVEVENIGARRLHTVMSHLLNEL 425

Query: 401 SFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            F   D  E   TVVI  E V   +       D+  FIL
Sbjct: 426 LFDVPDKIETHSTVVITKELVDQKLKGLVKNRDLSQFIL 464


>gi|330839574|ref|YP_004414154.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas
           sputigena ATCC 35185]
 gi|329747338|gb|AEC00695.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas
           sputigena ATCC 35185]
          Length = 472

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/458 (48%), Positives = 310/458 (67%), Gaps = 29/458 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL   ++D+++PKNIL++G TGVGKT
Sbjct: 16  TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 75

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+
Sbjct: 76  EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 135

Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159
             AEERILD  V +   S                              RE  RK+L  GE
Sbjct: 136 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 195

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           +  + I+IE+ D+   +              NL ++ + +M   ++KK ++SV       
Sbjct: 196 LEKEVIEIEIEDSGKPMVGMFAGSSLESMGDNLQDMMANLM-PKKQKKRKVSVAAARKLF 254

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            ++E+ +L+DM+ V   +I+  E  GIVFLDE DK+  +  G+G  VSREGVQRD+LP+V
Sbjct: 255 QQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILPIV 314

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ ILT
Sbjct: 315 EGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRILT 374

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+   +IGARRL T++E++LED
Sbjct: 375 EPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLLED 434

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A +++EK V +DA YV   + D     D+  FIL
Sbjct: 435 LSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 472


>gi|241761498|ref|ZP_04759586.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753207|ref|YP_003226100.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374405|gb|EER63902.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552570|gb|ACV75516.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 430

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/435 (51%), Positives = 313/435 (71%), Gaps = 5/435 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV  LD +I+GQ++AKRAVA+A+RNRWRRQ LP  L+DE+ PKNIL++GPT
Sbjct: 1   MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R  V
Sbjct: 61  GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+A   A ER+L+ALVGK A+  TRE FR++  DG + ++E+++E+ +  S        
Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPSMPVEIPGM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG  VG+++LS++  K     R K+ R+ V++ +  L+ +E+DR +D D + R ++   E
Sbjct: 181 GG-QVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNAE 236

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASG
Sbjct: 237 ANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIASG 295

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L +L + DF  IL+ T ++L+ QY+ L+ TE ++L F
Sbjct: 296 AFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLHF 355

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED I  LA +A  +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV   
Sbjct: 356 EEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDEK 415

Query: 423 IGDFPSETDMYHFIL 437
           +      +D+  +IL
Sbjct: 416 LSGIAKNSDLSKYIL 430


>gi|312876490|ref|ZP_07736473.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796701|gb|EFR13047.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 465

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/464 (46%), Positives = 313/464 (67%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVG
Sbjct: 3   ELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E+
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKER 122

Query: 126 ASINAEERILDALVGKTATSNT-------------------------------REVFRKK 154
           A    E+RIL+ L+ +  +                                  RE+ R+K
Sbjct: 123 AKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILREK 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           LR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M++++
Sbjct: 183 LRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIKE 241

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQRD
Sbjct: 242 AREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQRD 301

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + DF
Sbjct: 302 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEEDF 361

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           + ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+E
Sbjct: 362 KKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVVE 421

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 422 KIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|65321156|ref|ZP_00394115.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Bacillus anthracis str. A2012]
          Length = 463

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/465 (43%), Positives = 303/465 (65%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 240 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 299 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 359 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LED+SF AS++  + + I  +YV   +       D+   IL
Sbjct: 419 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQIIL 463


>gi|312621563|ref|YP_004023176.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202030|gb|ADQ45357.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 464

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/465 (46%), Positives = 312/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILDALVGKTATSNT-------------------------------REVFRK 153
           +A    E+RIL+ L+ +                                     RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M+++
Sbjct: 181 KLRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIR 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 240 EAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 300 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLTEED 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+
Sbjct: 360 FKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVV 419

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 420 EKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|312126814|ref|YP_003991688.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776833|gb|ADQ06319.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 465

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/465 (46%), Positives = 314/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 2   MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 62  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121

Query: 125 QASINAEERILDALVGKTATSNT-------------------------------REVFRK 153
           +A    E+RIL+ L+ +  +                                  RE+ R+
Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 181

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M+++
Sbjct: 182 KLRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIR 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 241 EAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 301 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEED 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+
Sbjct: 361 FKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVV 420

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 421 EKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 465


>gi|297584030|ref|YP_003699810.1| heat shock protein HslVU ATPase subunit HslU [Bacillus
           selenitireducens MLS10]
 gi|297142487|gb|ADH99244.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus
           selenitireducens MLS10]
          Length = 463

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 306/466 (65%), Gaps = 34/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PREIV  LD+ IIGQ  AKR+VA+ALRNR+RR  L  ++RDE+ PKNIL++GPT
Sbjct: 1   MSQTLTPREIVERLDQSIIGQSSAKRSVAVALRNRYRRSLLEENVRDEISPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+V+I +V++ +  +V
Sbjct: 61  GVGKTEIARRLAKLTGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVSIRMVKQEKTVKV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           R+ A   A +RI+  LV      ++     +                             
Sbjct: 121 RDLAEKQANQRIIGLLVPTAKKESSYRNPLEMLFQNGEDDEEPEPEPEEHESVRERRRRI 180

Query: 155 ---LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
              L DGE+ ++E+ IEV +  + +   D+  G     +N+ ++F   M   +KKK ++ 
Sbjct: 181 TRQLEDGELEEREVTIEVEEQQNQM--MDMIPGMEQMGMNMQDMFGG-MFPKKKKKRKLP 237

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LIDM+ V  ++I   E  GI+F+DE DK+ ++  G    VSREGV
Sbjct: 238 VREARKVLAEDEAQKLIDMEEVKIEAISRAEQLGIIFVDEMDKVASKSGGQSADVSREGV 297

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TKYGS+ TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L SLN 
Sbjct: 298 QRDILPVVEGSTVATKYGSVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELDSLNV 357

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + +  LI QY+ ++  EGI L FTED+I  +A++A ++N    +IGARRL T
Sbjct: 358 EDFVRILVEPKHALIKQYQAMIDIEGIELTFTEDAIREIAEIAYDVNEQTENIGARRLHT 417

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF AS++  +T+ I  EYVR  + +   + D+  FIL
Sbjct: 418 ILEKLLEDLSFEASEITMETISITPEYVREKLQNIVEDRDLSRFIL 463


>gi|56551143|ref|YP_161982.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542717|gb|AAV88871.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 430

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/435 (51%), Positives = 313/435 (71%), Gaps = 5/435 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P+ IV  LD +I+GQ++AKRAVA+A+RNRWRRQ LP  L+DE+ PKNIL++GPT
Sbjct: 1   MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R  V
Sbjct: 61  GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE+A   A ER+L+ALVGK A+  TRE FR++  DG + ++E+++E+ +  S        
Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPSMPVEIPGM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG  VG+++LS++  K     R K+ R+ V++ +  L+ +E+DR +D D + R ++   E
Sbjct: 181 GG-QVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNAE 236

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASG
Sbjct: 237 ANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIASG 295

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV L +L + DF  IL+ T ++L+ QY+ L+ TE ++L F
Sbjct: 296 AFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLHF 355

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            ED I  LA +A  +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV   
Sbjct: 356 EEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDER 415

Query: 423 IGDFPSETDMYHFIL 437
           +      +D+  +IL
Sbjct: 416 LSGIAKNSDLSKYIL 430


>gi|145219766|ref|YP_001130475.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205930|gb|ABP36973.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeovibrioides DSM 265]
          Length = 492

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/468 (46%), Positives = 311/468 (66%), Gaps = 39/468 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVGK
Sbjct: 27  LTPHQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVGEELRDEIMPNNIIMIGPTGVGK 86

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+A
Sbjct: 87  TEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREKA 146

Query: 127 SINAEERILDALVGKTATS-------------------------------NTREVFRKKL 155
           + + EERI+D L+   A S                                +RE   ++L
Sbjct: 147 AAHVEERIIDILLPPVAGSAEDDIQEALIEGDEGSSSSFEPKDESLEVNRRSREKMLQRL 206

Query: 156 RDGEISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           R+G++ D++I+++V+  SS   +  F   G        + +L + +    + KK R+++ 
Sbjct: 207 REGKLEDRQIEMDVSGDSSGGMMQIFGPMGQMEEIGGIMQDLMNGL--PRKSKKRRVTIA 264

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                L ++E  +LIDMDTV +++I  VE  GIVF+DE DKI A  +G G     VSREG
Sbjct: 265 DARRILEQEEVQKLIDMDTVVKEAIIKVEQSGIVFIDEIDKIAAPTTGGGAKGPDVSREG 324

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL 
Sbjct: 325 VQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLT 384

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF LILT   + LI QY+ LM TEG+ L FT+ SI  +A  A  +N +V +IGARRL 
Sbjct: 385 EEDFYLILTQPRNALIKQYRALMGTEGVDLQFTDGSIREIARTAAVVNESVENIGARRLH 444

Query: 391 TVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+M  +LE++ F   + + +  V+ID E V+  +    S+ D+  +IL
Sbjct: 445 TIMTNLLEELMFDIPENMSKGKVLIDEEMVKAKLNHVASDRDLSQYIL 492


>gi|251797450|ref|YP_003012181.1| heat shock protein HslVU, ATPase HslU [Paenibacillus sp. JDR-2]
 gi|247545076|gb|ACT02095.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp.
           JDR-2]
          Length = 467

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/463 (43%), Positives = 302/463 (65%), Gaps = 33/463 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PR+IV+ELD+YI+GQ+ AKR+VAIALRNR+RR  L   LRDE++PKNIL++GPTGVGK
Sbjct: 6   FTPRQIVAELDKYIVGQKPAKRSVAIALRNRYRRSMLDETLRDEIVPKNILMIGPTGVGK 65

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI +V+  + + V+++A
Sbjct: 66  TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAEKTEAVQDKA 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--------------- 171
              A ER++  LV         +   + L   + ++KE   E                  
Sbjct: 126 EKLANERLVSLLVPSKVKEKQSKNPFEMLFGNQQNNKETVEEPEQDNVVISKRSQARDDL 185

Query: 172 -----------------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
                            + + +      G   +G +N+ ++  + M   + K+ +++V++
Sbjct: 186 AAGKLENEIVEVEIEDNSPTMLDMLGGQGPDGLGGMNMQDMLGQFM-PKKTKQRKLAVKE 244

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L+++E+++LI+MD V  +S+   E  GI+F+DE DKI +   GNG  VSREGVQRD
Sbjct: 245 ARKVLIQEEANKLINMDDVIAESVSRAEQTGIIFIDEIDKIASPSRGNGPDVSREGVQRD 304

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TD++LFIA+GAFHV++P+DL+PE+QGRFP+RV L SL+  DF
Sbjct: 305 ILPIVEGSTVVTKYGPVKTDYVLFIAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLEDF 364

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L  QY  L++TEGI ++F++++I  +A +A +LN    +IGARRL T++E
Sbjct: 365 VSILTEPKNALTKQYAALLQTEGIAIEFSDEAIKEIASIAADLNRNTENIGARRLHTILE 424

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A D+    +VI  EYVR  +G      D+  +IL
Sbjct: 425 KLLEDLSFEAPDITLDHMVITPEYVREKVGGIAKNRDLSQYIL 467


>gi|302872576|ref|YP_003841212.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575435|gb|ADL43226.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 464

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/465 (45%), Positives = 313/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVKELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILDALVGKTAT-------------------------------SNTREVFRK 153
           +A    E+RIL+ L+ +  +                                  RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMDQSYQTTDDYIKTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M+++
Sbjct: 181 KLRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIR 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V +++IQ  E  GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 240 EAREVLEQEEYNKLIDMDEVIKEAIQRAEQQGIIFIDEIDKIAGKGSSVGPDVSREGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 300 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEED 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+++I+A+A VAV +N    +IGARRL TV+
Sbjct: 360 FKKILTQPKNAIIKQYVELMKTEGVNITFTDNAIEAIAKVAVKINEQSENIGARRLHTVV 419

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 420 EKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|193213901|ref|YP_001995100.1| ATP-dependent protease ATP-binding subunit HslU [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087378|gb|ACF12653.1| heat shock protein HslVU, ATPase subunit HslU [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/461 (47%), Positives = 307/461 (66%), Gaps = 31/461 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV ELD+YIIGQ++AK++VAIALRNR RRQ++   LRDE+MP NI+++GPTGVGK
Sbjct: 42  LTPSQIVKELDKYIIGQREAKKSVAIALRNRLRRQRVEGALRDEIMPNNIIMIGPTGVGK 101

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL+D+A+ +VR  +   V+E+A
Sbjct: 102 TEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLMDLAVGMVRSEQSVVVQEKA 161

Query: 127 SINAEERILDALVGKTA---------------------------TSNTREVFRKKLRDGE 159
              AEERILD L+                                  +RE  R +LR+G+
Sbjct: 162 KQLAEERILDILLPPVKKIPAGFKKQQSAETDADTDEDKTENEINDRSREKMRDRLRNGK 221

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + DK I++EV+  S  +     P G    I  + +     +   R KK R+++ +    L
Sbjct: 222 LDDKTIELEVSSDSQGMMQILGPFGPMEDIGGMMQDIISGLPKKR-KKRRVTISEAKVIL 280

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLP 277
            ++E+ +LIDMD V +++ Q VEN GIVF+DE DKI +  +GNG    VSREGVQRDLLP
Sbjct: 281 EQEETQKLIDMDAVVKEATQRVENSGIVFIDEIDKIASSSTGNGRSPDVSREGVQRDLLP 340

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF  I
Sbjct: 341 IVEGSNVATKYGLVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLQEDDFVKI 400

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT  E+ LI QY  L+KTE + L+F ED I  +A +A  +N +V +IGARRL T+M  +L
Sbjct: 401 LTQPENALIKQYTALLKTENVELEFLEDGIQEIARIAAQVNESVENIGARRLHTIMTTLL 460

Query: 398 EDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++ F+  + + +  +V+D   V   + D   + D+  +IL
Sbjct: 461 EELMFNIPENIPDNKIVVDKAMVESRLSDIAKDRDLSRYIL 501


>gi|170288216|ref|YP_001738454.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2]
 gi|238688817|sp|B1L8X3|HSLU_THESQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|170175719|gb|ACB08771.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2]
          Length = 463

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 226/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G
Sbjct: 1   MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120

Query: 121 EVREQASINAEERILDALVGKTATSN----------------------------TREVFR 152
           EV  QA    EERILDALV ++                                 RE  R
Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KLR GE+ ++EI+IE+ +T S       PG   +GI  ++ +FS ++   +KKK +M V
Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGIE-ITNMFSGML-PKQKKKRKMKV 238

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L+  E+++LIDMD V ++++   +N GI+F+DE DKI  ++S  G  VSR+GVQ
Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L  L + 
Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + E+ +I QY+ L+ TEG+ L FTED I  +A +A  LN  + +IGARRL TV
Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            E+VLE+ISF A D+ EK +V+DAEYVR  +     + D+  +IL
Sbjct: 419 AEKVLEEISFEAPDIPEKRIVVDAEYVRRRLERIVQDEDLSAYIL 463


>gi|120602656|ref|YP_967056.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio
           vulgaris DP4]
 gi|166221476|sp|A1VDW3|HSLU_DESVV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|120562885|gb|ABM28629.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio
           vulgaris DP4]
          Length = 441

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/440 (47%), Positives = 300/440 (68%), Gaps = 11/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L   LRDE+ PKNI+++GPTGVGK
Sbjct: 4   LTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+     VR +A
Sbjct: 64  TEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRARA 123

Query: 127 SINAEERILDALVGKTA------TSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISN 178
              AEER+LD L+ ++         +TR+  R   R G + D+E+D+EV +      +  
Sbjct: 124 EAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMDI 183

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           F +PG  S+G     +L  K     R+K  +M +++ +  L+ +E+ RL+D D V   + 
Sbjct: 184 FAMPGMESMG-NQFRDLMGKAF-PARRKMRKMKLREAWNLLVDEEASRLLDQDKVVDIAR 241

Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + VE  GI+F+DE DK+ + +       +SREGVQRDLLP+VEGS V+TKYG + TDHIL
Sbjct: 242 ERVEQTGIIFIDELDKVASGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGMVRTDHIL 301

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH S+P+DL+PE+QGRFP+RV L +L + +F  ILT+  + L  QY  L+ TEG
Sbjct: 302 FIAAGAFHFSKPSDLIPELQGRFPLRVELDALGRDEFYRILTEPHNALTRQYAALLATEG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + + FT+D +  +A  A  +N    +IGARRL T+MER+L DISF A D   + V +DA 
Sbjct: 362 VTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGEHVTVDAA 421

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           YVR H+ D   + D+  +IL
Sbjct: 422 YVRTHLEDVRVDKDLSRYIL 441


>gi|146296275|ref|YP_001180046.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166221472|sp|A4XIX0|HSLU_CALS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|145409851|gb|ABP66855.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 465

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/464 (46%), Positives = 313/464 (67%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIV ELD+YI+GQ+ AKR VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVG
Sbjct: 3   ELTPQEIVRELDKYIVGQERAKRCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    ++++E+
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKER 122

Query: 126 ASINAEERILDALVGKTATSNT-------------------------------REVFRKK 154
           A    E+RIL+ L+ +                                     RE+ R+K
Sbjct: 123 AKALVEDRILEILIPEPHARKAGFKNPFEALFGAPSQEPEQTYQTTDDYIRTQREILREK 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           LR GE+ DK I++EV DT        +   +    ++  ++F  +    +KKK +M++++
Sbjct: 183 LRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVFGSLF-PKKKKKKKMTIRE 241

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L ++E ++LIDMD V +++I   E +GI+F+DE DKI  R SG G  VSREGVQRD
Sbjct: 242 AREVLEQEEYNKLIDMDEVIKEAIHRAEQHGIIFIDEIDKIAGRGSGVGPDVSREGVQRD 301

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + DF
Sbjct: 302 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELHPLTEEDF 361

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
           + ILT  ++ +  QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+E
Sbjct: 362 KKILTQPKNAITKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVVE 421

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++EDISF  +++++   VVID +YV   + D   + D+  FI+
Sbjct: 422 KIMEDISFEYANVEKPIDVVIDKDYVYSKVSDMIKDKDLNRFII 465


>gi|254478871|ref|ZP_05092235.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035184|gb|EEB75894.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium
           pacificum DSM 12653]
          Length = 461

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/462 (45%), Positives = 315/462 (68%), Gaps = 26/462 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNIL+VG
Sbjct: 1   MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120

Query: 121 EVREQASINAEERILDALVGKTA-------------------------TSNTREVFRKKL 155
            V E+A   AEER++D L+GK                            S  RE  R++L
Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R GE+ +  ++IEV DT+  +       GA    + L ++FS +    +KK  +++V + 
Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDL-LPKKKKLRKVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+  LIDMD V  ++++  EN GI+F+DE DKI +     G  VSREGVQRDL
Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF 
Sbjct: 300 LPIIEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY+EL++TEG+ + +TE++I+ +A+VA  +N    DIGARRL TVME+
Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ED+SF A +L  + +VI A+YV+  + D  ++ ++  +IL
Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461


>gi|319778977|ref|YP_004129890.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella
           equigenitalis MCE9]
 gi|317109001|gb|ADU91747.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella
           equigenitalis MCE9]
          Length = 444

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 223/446 (50%), Positives = 299/446 (67%), Gaps = 11/446 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +P+EIVSELD+YIIGQ  AK++VA+ALRNRWRRQQ+   LR E+ PKNI+++G
Sbjct: 1   MDQISVMTPKEIVSELDKYIIGQTKAKKSVAVALRNRWRRQQVAEPLRTEIHPKNIMMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+++  +RES   
Sbjct: 61  PTGVGKTEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLTDISVKQLRESDMK 120

Query: 121 EVREQASINAEERILDALVGKTATSN---------TREVFRKKLRDGEISDKEIDIEVAD 171
            V   A   AE+RILD LV  T  S           R+VFRKKLR+G++ D EI+++V  
Sbjct: 121 RVNSIAQDAAEDRILDILVTPTHDSEGNPVREENTARQVFRKKLREGKLDDMEIEVDVKP 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  +    I         NL  LFS +    RK K +M+++K    L  +ES++ ++ D
Sbjct: 181 PAVQMEILGIDA-VDDMRDNLKGLFSSI-SKERKNKKKMTIKKALKVLTDEESEKHLNED 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I  VE  GIVFLDE DKI +    +   VSR+GVQRDLLPL+EG++V TKYG +
Sbjct: 239 DIRERAIINVEQNGIVFLDEIDKITSSSEKSSADVSRQGVQRDLLPLIEGTTVKTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFI SGAFH+S+P+DL+PE+QGR P+RV L +L+  DF  IL +T+S+LI QY  
Sbjct: 299 KTDHILFITSGAFHLSKPSDLIPELQGRLPIRVELDALSTDDFVRILKETDSSLIKQYTA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + LDFTED I  +A++A  +N  + +IGARRL TVME++LE ISF A      T
Sbjct: 359 LLDTESVKLDFTEDGIRRIAELAYEVNENMENIGARRLYTVMEKLLEQISFDADSNSGST 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ID +YV   + D   + D+  ++L
Sbjct: 419 LTIDKDYVNDKLQDIVKDQDLSQYVL 444


>gi|20807894|ref|NP_623065.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|22653791|sp|Q8R9Y3|HSLU_THETN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|20516460|gb|AAM24669.1| ATP-dependent protease, ATPase subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 461

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/462 (45%), Positives = 315/462 (68%), Gaps = 26/462 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNIL+VG
Sbjct: 1   MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120

Query: 121 EVREQASINAEERILDALVGKTA-------------------------TSNTREVFRKKL 155
            V E+A   AEER++D L+GK                            S  RE  R++L
Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R GE+ +  ++IEV DT+  +       GA    + L ++FS +    +KK  +++V + 
Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDL-LPKKKKLRKVTVAEA 239

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+  LIDMD V  ++++  EN GI+F+DE DKI +     G  VSREGVQRDL
Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EG +V TKYG + TD+ILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF 
Sbjct: 300 LPIIEGCTVMTKYGPVKTDYILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + ++ L  QY+EL++TEG+ + +TE++I+ +A+VA  +N    DIGARRL TVME+
Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + ED+SF A +L  + +VI A+YV+  + D  ++ ++  +IL
Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461


>gi|189346637|ref|YP_001943166.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           limicola DSM 245]
 gi|189340784|gb|ACD90187.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium limicola
           DSM 245]
          Length = 490

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 218/471 (46%), Positives = 311/471 (66%), Gaps = 40/471 (8%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P +IV  LD+YIIGQ+DAK++VAIALRNR RRQ +  DLR+E+MP NI+++GPTGV
Sbjct: 22  HNLTPNQIVELLDKYIIGQKDAKKSVAIALRNRLRRQHVGDDLREEIMPNNIIMIGPTGV 81

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EV+E
Sbjct: 82  GKTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVKE 141

Query: 125 QASINAEERILDALVGKTATS-------------------------------NTREVFRK 153
           +A++  EER+LD L+     S                                +RE   +
Sbjct: 142 KAALLVEERLLDILLPPAPPSRSHEDQDDDLDENRNAMAPADENDISQEVNRRSREKMLE 201

Query: 154 KLRDGEISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +LR G++ D++I+++ A  +    +  F   G        + +L S +    ++KK R++
Sbjct: 202 RLRKGKLEDRQIEMDTASENPGGMMQIFGPLGQMEEIGSIMQDLMSGL--PRKRKKRRVT 259

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN----GIGVS 267
           + +    L ++E  +LIDMD V +D+I  VE  GIVF+DE DKI A  +G+    G  VS
Sbjct: 260 IAEARRILEQEEVQKLIDMDAVVKDAINKVEQSGIVFIDEIDKIAAPSTGSGGGKGPDVS 319

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           REGVQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHVS+P+DL+PE+QGRFP+RV LK
Sbjct: 320 REGVQRDLLPIVEGSNVATKYGIVKTDHVLFIASGAFHVSKPSDLIPELQGRFPIRVELK 379

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL + DF  ILT  ++ LI QYK L+ TEG+ LDFT+ +I  +A +A  +N +V +IGAR
Sbjct: 380 SLTEEDFYKILTQPKNALIKQYKALISTEGVDLDFTDGAILEIARIAAKVNESVENIGAR 439

Query: 388 RLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T+M  +LE++ F+    + E+ VVID   V+  +    S+ D+  +IL
Sbjct: 440 RLHTIMTNLLEELMFNIPESVTEEKVVIDEAMVQDKLSAVSSDRDLSQYIL 490


>gi|222530144|ref|YP_002574026.1| ATP-dependent protease ATP-binding subunit HslU
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456991|gb|ACM61253.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 464

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/465 (45%), Positives = 312/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ  AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    ++++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKE 120

Query: 125 QASINAEERILDALVGKTATSNT-------------------------------REVFRK 153
           +A    E+RIL+ L+ +                                     RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK I++EV DT        +   +    ++  ++   +    +KKK +M+++
Sbjct: 181 KLRSGELEDKVIEVEVEDTVKPPFEMIMGTISDEMGISFQDVIGSLF-PKKKKKKKMTIR 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V +++IQ  E +GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 240 EAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 300 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLTEED 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+
Sbjct: 360 FKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVV 419

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 420 EKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|332703813|ref|ZP_08423901.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553962|gb|EGJ51006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 464

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/450 (48%), Positives = 297/450 (66%), Gaps = 19/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PREIVSELDRYI+ Q+DAKR VAIA+RNRWRRQQL   LRDE+ PKNI+++GPTGVG
Sbjct: 16  NLTPREIVSELDRYIVSQKDAKRMVAIAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 75

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE +IR+L+D+ +++V+E     VR Q
Sbjct: 76  KTEIARRLAKLAGSPFHKVEATKFTEVGYVGRDVESMIRELMDIGVSLVKEEELARVRVQ 135

Query: 126 ASINAEERILDALVGKTATS-----------------NTREVFRKKLRDGEISDKEIDIE 168
           A   AEE +LD L+   +                   +TRE  R   R G++ ++E++++
Sbjct: 136 AEKRAEEALLDLLLPGPSQQGVFAAAPGGETAGADKDSTREKLRTLWRQGQLDEREVEMQ 195

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V   +          G         ++FSKV  S +K +     +  +  L+++ESD+L+
Sbjct: 196 VTAKTGPQIEVMSIPGMEEMGSQFRDMFSKVFPSKKKTRKIKI-KDAHGLLVQEESDKLV 254

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTK 287
           DMD V   + + VE  GI+F+DE DKI   D+  G   VSREGVQRDLLP+VEGS+V+TK
Sbjct: 255 DMDKVVEQAKERVEQTGILFIDEIDKICGSDARRGGPDVSREGVQRDLLPVVEGSTVNTK 314

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L + +F  ILT+  + L  
Sbjct: 315 YGMVKTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELKDLGQEEFYRILTEPANALTK 374

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L+ TE I L F +D++  +A  A  +N    +IGARRL T+MER+L D+SF A D 
Sbjct: 375 QYSALLSTEDIELSFGDDALREIAAFAEQINQETENIGARRLYTIMERILSDLSFEAPDR 434

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + V +D  YVR H+ D   + D+  +IL
Sbjct: 435 PGQKVAVDRVYVREHLKDVQQDHDLSRYIL 464


>gi|302381136|ref|YP_003816959.1| heat shock protein HslVU, ATPase HslU [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191764|gb|ADK99335.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 433

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 253/433 (58%), Positives = 335/433 (77%), Gaps = 1/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGV
Sbjct: 2   TDLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL+G+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR++RR  VR 
Sbjct: 62  GKTEIARRLARLSGSPFLKVEATKFTEVGYVGRDVDQIMRDLVEAALLMVRDARRAGVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERILDALVG  +   TR+ FRKKLR GE+ DKEI++++ADT+S I   D+ GG
Sbjct: 122 KAEAAAEERILDALVGPGSQPATRDAFRKKLRAGEMDDKEIELQLADTASPIQGLDVGGG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +VG+LNLS++  K +G GR K +R +V+     L+ +ESD+L+D D++ R+++ + EN 
Sbjct: 182 GNVGLLNLSDMLGK-LGGGRTKSVRTTVRDALQPLLAEESDKLLDQDSLTREALLLAENE 240

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+  R    G  VSREGVQRDLLPL+EG++VSTKYG + +DH+LFIASGAF
Sbjct: 241 GIVFIDEIDKVAGRQDRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKSDHVLFIASGAF 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DF  ILT+ E+NLI Q + L+ TE + L FT 
Sbjct: 301 HVAKPSDLLPELQGRLPIRVELKALTRDDFVRILTEPEANLIRQNQALLATEDVTLTFTP 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D+++ALAD AV  N  V +IGARRL TV+ERVLE+ SF ASDL  +TV  D + VR  + 
Sbjct: 361 DAVEALADAAVAANGAVENIGARRLVTVIERVLEETSFKASDLSGQTVAFDGDAVRGKVA 420

Query: 425 DFPSETDMYHFIL 437
           +     D+  FIL
Sbjct: 421 ELAKNADLSRFIL 433


>gi|94268397|ref|ZP_01291165.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
 gi|93451624|gb|EAT02419.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
          Length = 498

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 222/480 (46%), Positives = 312/480 (65%), Gaps = 49/480 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV  LD +IIGQ +AKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVG
Sbjct: 20  SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+
Sbjct: 80  KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139

Query: 126 ASINAEERI------------------------LDA-----------------------L 138
           A++ AEER+                        +DA                        
Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFS 197
                  +TRE FR+ LRDG++  +E++IEV    S  + +    GG      N+ ++F 
Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           K M   +  K R+ V +    L + E+++L+D + V R +I+  E  GIVFLDE DKI +
Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           +   +G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q
Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+RV L SL + +F  ILT+ ++ L+ QY  L+ TE I L+F + +I  LA +A ++
Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           NS   +IGARRL T++ER+L+++SF A DL+EK   + AEYVR  + +     D+  F+L
Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498


>gi|299536756|ref|ZP_07050064.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           fusiformis ZC1]
 gi|298727768|gb|EFI68335.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           fusiformis ZC1]
          Length = 466

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/462 (42%), Positives = 297/462 (64%), Gaps = 30/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKL------------------------------ 155
           A   A E I+  LV         +   + L                              
Sbjct: 125 AEELANEAIVKLLVPSLRKKQAMQNPFEMLFGGKEQPTNDDSSADDGEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G++ ++ + +EV + +  I +     G  +   +  +     +   ++KK R+ V+  
Sbjct: 185 RNGKLENEWVTVEVTEQNPSIFDALQGTGMDMSANSGMQDMLSSLMPKKQKKRRVQVKDA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+++LID D V +++I   E  GI+F+DE DKI +++      VSREGVQRD+
Sbjct: 245 RRILTIEEANKLIDADEVAQEAINRAEQTGIIFIDEIDKIASKEGNTSANVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF 
Sbjct: 305 LPIVEGSTVTTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +LILQYK L++TEG+ + FT D+I+ +A++A  +N    +IGARRL T++ER
Sbjct: 365 RILQEPDQSLILQYKALLETEGVEIHFTTDAIERIAEIATEVNQETDNIGARRLHTILER 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF AS++   ++ I+A YV   +       D+  FIL
Sbjct: 425 LLEELSFEASEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|154249091|ref|YP_001409916.1| ATP-dependent protease ATP-binding subunit HslU [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153027|gb|ABS60259.1| heat shock protein HslVU, ATPase subunit HslU [Fervidobacterium
           nodosum Rt17-B1]
          Length = 458

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/460 (46%), Positives = 305/460 (66%), Gaps = 25/460 (5%)

Query: 1   MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           M   F+  +PR+IV EL++YIIGQ  AK+AVAIA+RNR RRQ+L  + R E++PKNILL+
Sbjct: 1   MLTNFDELTPRQIVEELNKYIIGQDKAKKAVAIAIRNRIRRQRLSEEWRKEVVPKNILLI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RRLA+++G+PF+KVE TKFTE+GYVG+NV+ +IRDLV++A+N+V++ + 
Sbjct: 61  GPTGVGKTEIARRLAQISGSPFLKVEATKFTEVGYVGKNVDSMIRDLVEIAVNMVKQEKI 120

Query: 120 DEVREQASINAEERILDALVGKTATS----------------------NTREVFRKKLRD 157
            EV  +     EERILDALV     S                        R   R+KL  
Sbjct: 121 KEVEPKVKNLVEERILDALVPVKKQSVPFANIFGFQPAQEQSDDQDVRRKRAELREKLAK 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GEI D EI+I+V      I    +P    +GI      F   +   +KKK RM + +   
Sbjct: 181 GEIEDLEIEIDVEINQPGIGFIGMPDMEDMGIDFSQ--FLGNLLPKQKKKRRMKISEARR 238

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L   ES+++IDMD V + ++ + +  GI+F+DE DKI      +G  VSR+GVQRDLLP
Sbjct: 239 VLTPIESEKIIDMDEVIQKALVLAQERGIIFIDELDKIAGGSQAHGPDVSRQGVQRDLLP 298

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG++VSTKYG + TD+ILFI +GAFH+++P DL+PE+QGRFP+RV L+ L + DF  I
Sbjct: 299 IVEGTTVSTKYGPVKTDYILFIGAGAFHMTKPTDLIPELQGRFPIRVELEPLRQEDFVRI 358

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ E+ L+ QYK L+ TEGI L+FT+D+ID ++ +A  LN  + +IGARRL TV+E++L
Sbjct: 359 LTEPENALLKQYKALLYTEGIELEFTQDAIDEISKIAYYLNEKMENIGARRLYTVVEKLL 418

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           EDI F A ++    ++ID  YV + +G+   + ++  +IL
Sbjct: 419 EDIMFQAPEVDTNKIIIDKNYVTMKLGEIVKDENLSAYIL 458


>gi|94264967|ref|ZP_01288738.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
 gi|93454570|gb|EAT04848.1| Heat shock protein HslU [delta proteobacterium MLMS-1]
          Length = 498

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 222/480 (46%), Positives = 312/480 (65%), Gaps = 49/480 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV  LD +IIGQ +AKR+VAIALRNRWRRQQ+P  LRDE+ PKNI+++GPTGVG
Sbjct: 20  SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+
Sbjct: 80  KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139

Query: 126 ASINAEERI------------------------LDA-----------------------L 138
           A++ AEER+                        +DA                        
Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFS 197
                  +TRE FR+ LRDG++  +E++IEV    S  + +    GG      N+ ++F 
Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           K M   +  K R+ V +    L + E+++L+D + V R +I+  E  GIVFLDE DKI +
Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           +   +G  VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q
Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+RV L SL + +F  ILT+ ++ L+ QY  L+ TE I L+F + +I  LA +A ++
Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           NS   +IGARRL T++ER+L+++SF A DL+EK   + AEYVR  + +     D+  F+L
Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498


>gi|206558901|ref|YP_002229661.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia J2315]
 gi|238693078|sp|B4E7Z1|HSLU_BURCJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|198034938|emb|CAR50810.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia J2315]
          Length = 447

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|317121811|ref|YP_004101814.1| heat shock protein HslVU, ATPase HslU [Thermaerobacter marianensis
           DSM 12885]
 gi|315591791|gb|ADU51087.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           marianensis DSM 12885]
          Length = 485

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 223/465 (47%), Positives = 308/465 (66%), Gaps = 35/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELDRYI+GQ  AKRAVAIALRNRWRRQQLP  LRDE+ PKNIL++GPTGVGK
Sbjct: 22  LTPRQIVAELDRYIVGQAAAKRAVAIALRNRWRRQQLPPQLRDEVAPKNILMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDLV+ AI +V+  R   V+++A
Sbjct: 82  TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLVETAIRMVKAERMATVQDRA 141

Query: 127 SINAEERILDALVGKTATSNTR----------------------------------EVFR 152
              A+ER+LD LV        R                                  +   
Sbjct: 142 RAAADERLLDVLVPPPRRRAQRFSSPWEMLLGSLGAAPSPAEPVRPEEEEDWRRRRQEVA 201

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            +LR GE+ D+ ++IEV D +  + +     G     LN+ +L  K     RK++ R+ V
Sbjct: 202 ARLRAGELEDQVVEIEVEDQTPPMVDILGGPGLEEMTLNVQDLL-KDWLPRRKRRRRLPV 260

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L ++E+ +LIDMD V  ++++  E  GIVF+DE DKI  R+ G+G  VSREGVQ
Sbjct: 261 REAREVLAQEEAQKLIDMDQVVAEAVRRTEQAGIVFIDEIDKIAGRERGHGPDVSREGVQ 320

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V T++G + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+ L + 
Sbjct: 321 RDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQPLTRE 380

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D++D LA +A   N    +IGARRL T+
Sbjct: 381 DFKRILTEPDNALLRQYQALLATDGVELEFTPDAVDELAAMAARANEQAENIGARRLHTL 440

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ERVLE ++F A D  +  VV+DA +VR  +     + D+  +IL
Sbjct: 441 LERVLEPLAFDAPDALQGKVVVDAAFVRQRLEGVLKDQDLSRYIL 485


>gi|172062041|ref|YP_001809693.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           ambifaria MC40-6]
 gi|238689143|sp|B1YPR3|HSLU_BURA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|171994558|gb|ACB65477.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MC40-6]
          Length = 447

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 317/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 422 VTIDATYVDRALGEVAQDEDLSRYVL 447


>gi|161526256|ref|YP_001581268.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|221201905|ref|ZP_03574942.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2M]
 gi|221207589|ref|ZP_03580597.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2]
 gi|221215814|ref|ZP_03588773.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD1]
 gi|160343685|gb|ABX16771.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|221164350|gb|EED96837.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD1]
 gi|221172435|gb|EEE04874.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2]
 gi|221178325|gb|EEE10735.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           multivorans CGD2M]
          Length = 447

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/446 (48%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|258544137|ref|ZP_05704371.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium
           hominis ATCC 15826]
 gi|258520645|gb|EEV89504.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium
           hominis ATCC 15826]
          Length = 456

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 222/448 (49%), Positives = 300/448 (66%), Gaps = 16/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+   +R E+ PKNIL++GPTGV
Sbjct: 10  LNMTPREIVEELDRHIIGQKAAKRAVANALRSRWRRRQIAEPMRSEITPKNILMIGPTGV 69

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDLV+ ++ + RE  R +V+ 
Sbjct: 70  GKTEIARRLAKLAEAPFVKVEATKFTEVGYVGRDVDSIIRDLVETSLKLERERARKQVQT 129

Query: 125 QASINAEERILDALVG-------------KTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +A   A ER+LDALV                  +  R+ +R+++   E++DK I+IEV D
Sbjct: 130 KAREAALERVLDALVPLAKGATSWHDGANVPEDNPARKTYRERILREELNDKIIEIEVRD 189

Query: 172 TS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           T  S       P G       LSELF   +G  R  K ++ +     +L  +E+D+L+  
Sbjct: 190 TPTSAHVEIMAPPGMEDMSSQLSELFQN-LGKQRTSKQKIKIADALVQLAEEEADKLVSE 248

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             + + +I   E  GIVF+DE DK+  R    G  VSREGVQRDLLPLVEGS+VSTKYG 
Sbjct: 249 ADIKQQAIANAEQNGIVFIDEIDKVAKRSDVGGADVSREGVQRDLLPLVEGSTVSTKYGM 308

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TDHILFIASGAFH+++P+DL+PE+QGR PVRV L +LN  DFR ILT+ + +LI QY 
Sbjct: 309 IKTDHILFIASGAFHLAKPSDLIPELQGRMPVRVELDALNVDDFRRILTEPDHSLIKQYT 368

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QE 409
            L+ TE + L+FT+D I+ +A++A ++N T  +IGARRL T+MER+ E +SF A+D    
Sbjct: 369 ALLATESLHLEFTDDGIEKIAEIAYHVNKTTENIGARRLHTLMERLTESLSFEAADRPDG 428

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + IDA YV   +G+     D+  F+L
Sbjct: 429 DHIRIDAAYVENALGELSQNEDLSRFVL 456


>gi|189349030|ref|YP_001944658.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
 gi|189333052|dbj|BAG42122.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Burkholderia
           multivorans ATCC 17616]
          Length = 444

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/446 (48%), Positives = 319/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++   RES   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 359 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 419 VTIDAKYVDRALGEVSQDEDLSRYVL 444


>gi|47097540|ref|ZP_00235077.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47014088|gb|EAL05084.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 1/2a F6854]
          Length = 472

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 7   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 67  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 245 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472


>gi|16803319|ref|NP_464804.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes EGD-e]
 gi|224501776|ref|ZP_03670083.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-561]
 gi|254829964|ref|ZP_05234619.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 10403S]
 gi|21759169|sp|Q8Y7J8|HSLU_LISMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|16410695|emb|CAC99357.1| clpY [Listeria monocytogenes EGD-e]
          Length = 469

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|158522506|ref|YP_001530376.1| ATP-dependent protease ATP-binding subunit [Desulfococcus
           oleovorans Hxd3]
 gi|238686894|sp|A8ZW65|HSLU_DESOH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|158511332|gb|ABW68299.1| heat shock protein HslVU, ATPase subunit HslU [Desulfococcus
           oleovorans Hxd3]
          Length = 456

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/455 (46%), Positives = 300/455 (65%), Gaps = 24/455 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P EIV ELD+YI+GQ  AKR+VAIALRNRWRR+Q+P  +R+E+ PKNI+L+GPTGVG
Sbjct: 3   DLTPAEIVIELDKYIVGQAKAKRSVAIALRNRWRRRQVPEAMREEIAPKNIILIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  +PF+K+E +KFTE+GYVGR+VE ++RDLV++ +  ++ S R+ VRE+
Sbjct: 63  KTEIARRLARLTDSPFLKIEASKFTEVGYVGRDVESMVRDLVELTVTHLKVSEREAVREK 122

Query: 126 ASINAEERILDALVGKTATSN-----------------------TREVFRKKLRDGEISD 162
           A   AEERILD L+ +                            TRE  R  LR G++ D
Sbjct: 123 AVRLAEERILDVLLPRPEGPQRADGDEPLGSHIEIVSDDDGRVSTREKLRTMLRAGKLKD 182

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +D+E+AD S  +       G     +N  ++F+ ++   +K++      +    L  +
Sbjct: 183 RYVDLELADRSMPMVEIFSNSGLEEMGVNFKDMFAGLLPKNKKRRKVKV-PEALEMLTDE 241

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+  L+DMD V R +++ VE  GI+FLDE DKIVA   G+G  VSREGVQRDLLP+VEGS
Sbjct: 242 EAQNLVDMDRVVRMAVEKVEQSGIIFLDEIDKIVATSKGSGPDVSREGVQRDLLPIVEGS 301

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V TK+G++ TDHILFIASGAFH+ +P+DL+PE+QGRFP+RV L +L K +F  IL + E
Sbjct: 302 TVMTKHGAVKTDHILFIASGAFHMCKPSDLIPELQGRFPIRVELDALGKEEFFRILIEPE 361

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L+LQY EL++TEG+ + F ++++  +A +A  +N+   +IGARRL T+ME +LED+ F
Sbjct: 362 NALLLQYIELLRTEGVDVAFADEAVREIAAMAEEVNAGTENIGARRLHTLMEYLLEDLLF 421

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            A D     V ID  YV   +       D+  FIL
Sbjct: 422 DAPDRAGTKVAIDRAYVTDRLKTIRGNEDLSRFIL 456


>gi|42520987|ref|NP_966902.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410728|gb|AAS14836.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 437

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 233/438 (53%), Positives = 326/438 (74%), Gaps = 4/438 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +  P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G T
Sbjct: 1   MLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  +
Sbjct: 61  GVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKAL 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            ++A I AE+ I++++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIP
Sbjct: 121 AKKALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIP 180

Query: 183 G--GASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           G  G  VG++N++E+  K+   S + K I + V++    L+ +ES+RL+D D + +++I 
Sbjct: 181 GMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAID 240

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+EG++V+TKYG + TD+ILFI
Sbjct: 241 LVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFI 299

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH S+P+DLLPE+QGR P+RV LK+L + D   IL + ES+L+ QY  LMKTE + 
Sbjct: 300 ASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVT 359

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT+D I  +A++A  +N  V +IGARRL TVME++L++ISF AS+   +  +ID++YV
Sbjct: 360 LEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYV 419

Query: 420 RLHIGDFPSETDMYHFIL 437
           +  +     + D+  FIL
Sbjct: 420 KDKLESISKQLDLSKFIL 437


>gi|78067911|ref|YP_370680.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383]
 gi|123769933|sp|Q39BY0|HSLU_BURS3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77968656|gb|ABB10036.1| Heat shock protein HslU [Burkholderia sp. 383]
          Length = 447

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 320/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|254281791|ref|ZP_04956759.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR51-B]
 gi|219677994|gb|EED34343.1| heat shock protein HslVU, ATPase subunit HslU [gamma
           proteobacterium NOR51-B]
          Length = 433

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 225/436 (51%), Positives = 314/436 (72%), Gaps = 8/436 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV ELD++I+GQ DAKRAVAIALRNRWRRQQL  +LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPREIVHELDKHIVGQSDAKRAVAIALRNRWRRQQLDDELRAEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APF+KVE TKFTE+GYVGR+VE ++RDL + AI + RE   ++V+ +A
Sbjct: 61  TEIARRLARLAAAPFVKVEATKFTEVGYVGRDVESMVRDLAETAIKMHREQAMEKVQYRA 120

Query: 127 SINAEERILDALVGKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              AEER+LD L+      + ++TR++ RKKLR+G++ D+E++IE+    + +     PG
Sbjct: 121 EEAAEERLLDLLLPPDRDDSNTSTRQILRKKLREGDLDDREVEIEITHQGASVDIMAPPG 180

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
              +    L  LFS +  SG  K  R+ V++    L+ +E+ +LI+ D +  ++++  E 
Sbjct: 181 MEEM-TEQLQGLFSNLRPSG--KSRRLPVKEALKALVEEEAAKLINHDDLKAEALEAAEQ 237

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            GI+F+DE DK+  R    G  VSREGVQRDLLPL+EG SVSTK+G+I TDHILFIASGA
Sbjct: 238 NGIIFIDELDKVAKRGEVGGADVSREGVQRDLLPLIEGCSVSTKHGTIKTDHILFIASGA 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+S+P+DL+PE+QGR P+RV L++L  ++F+ ILT+  S+L  Q + LM TEG+ L+FT
Sbjct: 298 FHLSKPSDLIPELQGRLPIRVELEALGSAEFQRILTEPRSSLTEQNRALMATEGVELEFT 357

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421
           ED I  LA++A  +N    +IGARRL TVMER+LE++SF+A+D  L+++ VVIDA++V  
Sbjct: 358 EDGIRRLAEIAWQVNEQAENIGARRLHTVMERLLEEVSFTAADAGLEQRQVVIDADFVDE 417

Query: 422 HIGDFPSETDMYHFIL 437
            +       D+  FIL
Sbjct: 418 RLASLAQNEDLSRFIL 433


>gi|254828642|ref|ZP_05233329.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165]
 gi|254898556|ref|ZP_05258480.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes J0161]
 gi|254911953|ref|ZP_05261965.1| heat shock protein HslVU [Listeria monocytogenes J2818]
 gi|254936280|ref|ZP_05267977.1| heat shock protein HslVU [Listeria monocytogenes F6900]
 gi|284801664|ref|YP_003413529.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284994806|ref|YP_003416574.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|258601041|gb|EEW14366.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165]
 gi|258608869|gb|EEW21477.1| heat shock protein HslVU [Listeria monocytogenes F6900]
 gi|284057226|gb|ADB68167.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284060273|gb|ADB71212.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|293589915|gb|EFF98249.1| heat shock protein HslVU [Listeria monocytogenes J2818]
          Length = 469

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|169827115|ref|YP_001697273.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus
           sphaericus C3-41]
 gi|168991603|gb|ACA39143.1| ATP-dependent hsl protease ATP-binding subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 466

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/462 (42%), Positives = 300/462 (64%), Gaps = 30/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKL------------------------------ 155
           A   A E I+  LV       + +   + L                              
Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSDETEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G++ ++ + +EV + +  I +     G  +   N  +     +   ++KK R+ V+  
Sbjct: 185 RNGKLENEWVTVEVTEQTPSIFDALQGTGMDMSANNGMQDMLSSLMPKKQKKRRVQVKDA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+++LID D V ++SI   E  GI+F+DE DKI +++  +   VSREGVQRD+
Sbjct: 245 RRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF 
Sbjct: 305 LPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A  +N    +IGARRL T++ER
Sbjct: 365 RILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTILER 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF A+++   ++ I+A YV   +       D+  FIL
Sbjct: 425 LLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|167037674|ref|YP_001665252.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116089|ref|YP_004186248.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|326389488|ref|ZP_08211055.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           ethanolicus JW 200]
 gi|259491381|sp|B0K9V3|HSLU_THEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166856508|gb|ABY94916.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929180|gb|ADV79865.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|325994493|gb|EGD52918.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 459

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/458 (45%), Positives = 316/458 (68%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------REVFRKKLRDGE 159
           A   AE+R++D ++GK                                RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF+A +L  + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 459


>gi|299822641|ref|ZP_07054527.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi
           DSM 20601]
 gi|299816170|gb|EFI83408.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi
           DSM 20601]
          Length = 462

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/464 (42%), Positives = 297/464 (64%), Gaps = 29/464 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+ T   +PR+IV +LD+YIIGQ  AK++VA+ALRNR+RR  +   +R+E++PKNIL++G
Sbjct: 1   MENTAALTPRQIVEKLDQYIIGQHGAKKSVAVALRNRYRRSLMEETIREEIIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APF K+E TK+TE+GYVGR+VE ++RDLV+V++ IV+E +  
Sbjct: 61  PTGVGKTEIARRIAKLVKAPFTKIEATKYTEVGYVGRDVESMVRDLVEVSVRIVKEEKMS 120

Query: 121 EVREQASINAEERILDALVGKTATSNT---------------------------REVFRK 153
           EV  +A  NA++R++  L        +                           R+    
Sbjct: 121 EVYTRAQKNADKRVIKLLAPAQKKQKSQTTNPFEALFNQQAQEEEEVDAELRGKRDQLLW 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L++GE+ D+ + +EV +  + +  FD+  G+ +  +N        +   + KK +++V 
Sbjct: 181 RLQNGELDDQMVTVEVKEQQNPM--FDMLKGSGMDQMNGMSDALSNLMPKQTKKRKVTVA 238

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L  DE+ +LID D V    I+  E  GI+F+DE DKI +        VSREGVQR
Sbjct: 239 EARKILHEDEAAKLIDQDEVAALGIERAEQLGIIFIDEIDKITSGSEAGSGQVSREGVQR 298

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG++NT++ILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L + D
Sbjct: 299 DILPIVEGSQVATKYGTVNTEYILFIAAGAFHTSKPSDLIPELQGRFPIRVELEKLGQED 358

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ ++ LI QY+ L+KTEGI L FT+++++ LA +A  +N    +IGARRL T++
Sbjct: 359 FVKILTEPDNALIKQYRALLKTEGIDLVFTKEAVERLAAIAFEVNQDTDNIGARRLHTIL 418

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A ++   TV I   YV   +       D+  FIL
Sbjct: 419 EKLLEDLLFEAPEITLDTVTITESYVNEKLTSIMQNRDLTEFIL 462


>gi|23099005|ref|NP_692471.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus
           iheyensis HTE831]
 gi|32129626|sp|Q8CXH1|HSLU_OCEIH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|22777233|dbj|BAC13506.1| ATP-dependent Clp protease (heat-shock protein HslU)
           [Oceanobacillus iheyensis HTE831]
          Length = 465

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/467 (40%), Positives = 299/467 (64%), Gaps = 34/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +++PR+IV +LD++I+GQ+ AK++VA+ALRNR+RR +L    RDE++PKNIL++GPT
Sbjct: 1   MGMDYTPRQIVEQLDQFIVGQKQAKKSVAVALRNRYRRMKLDEGFRDEIVPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV++A+ +V+E +   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVEMAVRMVKEEKMAGV 120

Query: 123 REQASINAEERILDALVGKTATSN--------------------------------TREV 150
             +A   A +R++  LV ++                                     R+ 
Sbjct: 121 MNEAEEEANKRLVKLLVPESKKKPAMKNPFEMLFQSDGSDGDDETTEQDSHDEIRSKRKR 180

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
              +L  GE+ D  + +E+ +    + +     G     +N+ + F + M   + KK  +
Sbjct: 181 IAHQLALGELEDHIVSVEIDEVPPSMFDMLQGSGMEQMGMNMQDAFGQFMPKKK-KKRNL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L + E+ +L+DMD V +++    E  GI+F+DE DK+  +   N   VSREG
Sbjct: 240 PVSEARKVLTQQEAQKLVDMDEVAQEATSRAEGSGIIFIDEIDKVAGKQE-NAANVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V TK+G++ TDH+LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L 
Sbjct: 299 VQRDILPIVEGSTVVTKHGTVKTDHMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEKLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF+ ILT+  + LI QY+ +++TEGI ++FT+++I+ LA++A  +N    +IGARRL 
Sbjct: 359 VEDFKRILTEPSNALIKQYQLMLQTEGINVEFTDEAIERLAEIAYQVNQNTDNIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+S+ A ++  + V I   YV   +     + D+  FIL
Sbjct: 419 TILEKLLEDLSYEAPEITMEKVEITVGYVDDKLSSIVQDKDLSQFIL 465


>gi|126654060|ref|ZP_01725886.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|126589440|gb|EAZ83587.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
          Length = 466

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 199/462 (43%), Positives = 300/462 (64%), Gaps = 30/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I   LDRYI+GQ +AKRAVAIALRNR+RR  L  D++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ +  +V+E   + V+EQ
Sbjct: 65  KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKL------------------------------ 155
           A   A E I+  LV       + +   + L                              
Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSEETEVRSKRAQIAIDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G++ ++ I +EV + +  I +     G  +   N  +     +   ++KK R+ V+  
Sbjct: 185 RNGKLENEWITVEVTEQTPSIFDALQGTGMDMSANNGMQDMLSSLMPKKQKKRRVQVKDA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L  +E+++LID D V ++SI   E  GI+F+DE DKI +++  +   VSREGVQRD+
Sbjct: 245 RRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQRDI 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF 
Sbjct: 305 LPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A  +N    +IGARRL T++ER
Sbjct: 365 RILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTILER 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF A+++   ++ I+A YV   +       D+  FIL
Sbjct: 425 LLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466


>gi|74318560|ref|YP_316300.1| ATP-dependent protease ATP-binding subunit HslU [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058055|gb|AAZ98495.1| Heat shock protein HslU [Thiobacillus denitrificans ATCC 25259]
          Length = 438

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/441 (50%), Positives = 304/441 (68%), Gaps = 13/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV ELD++I+GQ  AKRAVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL++ A+  +RE    +VR +A
Sbjct: 61  TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETAVKQMREQATAKVRFRA 120

Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              AEERILDAL+  +          +    R+ FRK LR+G++ DKEI+IEVA  +  +
Sbjct: 121 EEGAEERILDALLPPSRGFGETEPPRSDGAARQRFRKMLREGQLDDKEIEIEVAAVTPSM 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
             F  PG   +    L  +F   +G  RK+  ++ V++    +  +E+ RLI+ +   + 
Sbjct: 181 EIFAPPGMEDLSQ-QLQGMFQN-LGQSRKQMRKLKVREAVKLVTEEEATRLINDEETKQQ 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +++ VE  GIVFLDE DKI  R   +G  VSR+GVQRDLLPL+EG++VSTKYG + TDHI
Sbjct: 239 ALEAVEQNGIVFLDEIDKIATRSDAHGSDVSRQGVQRDLLPLIEGTTVSTKYGMVKTDHI 298

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT T++ L  QY+ L+ TE
Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATE 358

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FTE  I  +A++A  +N    +IGARRL TVME++LEDISF A  +  + V IDA
Sbjct: 359 GVALRFTEGGIRRIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGSVTGEHV-IDA 417

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           E V   +    +  D+  ++L
Sbjct: 418 EAVSSRLAALAAREDLARYVL 438


>gi|146329822|ref|YP_001210213.1| ATP-dependent protease ATP-binding subunit HslU [Dichelobacter
           nodosus VCS1703A]
 gi|166221477|sp|A5EX25|HSLU_DICNV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|146233292|gb|ABQ14270.1| heat shock protein HslVU, ATPase subunit HslU [Dichelobacter
           nodosus VCS1703A]
          Length = 451

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/443 (48%), Positives = 299/443 (67%), Gaps = 11/443 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+   LR E+ PKNIL++GPTGV
Sbjct: 10  LNMTPREIVEELDRHIIGQKHAKRAVANALRSRWRRKQVAEPLRSEITPKNILMIGPTGV 69

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ +I + +   ++ V+ 
Sbjct: 70  GKTEIARRLAKLAEAPFIKVEATKFTEVGYVGRDVDSIIRDLVETSIKLEKNRAKERVKS 129

Query: 125 QASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +A   A ER+LD LV +   +           R+++R+++   E++D  I+IE   + S 
Sbjct: 130 KAREAALERVLDVLVPRKKQTAWTGEEEIDPARKMYRERILREEMNDTVIEIETNQSMSA 189

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 P G       LSE+F K  G  +K K +M++ K   +L  +E++ L+  + +  
Sbjct: 190 NVEIMTPPGMEEMSSQLSEMF-KSFGREKKTKRKMTIAKALIQLAEEEAEALVSHEEIKS 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I   E  GIVF+DE DK+  R    G  VSREGVQRDLLPLVEG ++STKYG I TDH
Sbjct: 249 AAIDNAEQNGIVFIDEIDKVARRSDVGGADVSREGVQRDLLPLVEGCTISTKYGMIKTDH 308

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAFH+++P+DL+PE+QGR PVRV L +L   DF+ ILT+ +++LI QY  L  T
Sbjct: 309 ILFIASGAFHLAKPSDLIPELQGRLPVRVELDALTADDFKRILTEPDASLIKQYTALFAT 368

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVI 414
           E + L+FTED I+ +A++A ++N T  +IGARRL T++ER+ + +SF A+D      V+I
Sbjct: 369 EQLHLEFTEDGINKIAEIAYHVNKTTENIGARRLHTLIERLTDSLSFDAADRRDGDRVII 428

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           DA YV   +G+  +  D+  FIL
Sbjct: 429 DAAYVEKTLGEISNNEDLSRFIL 451


>gi|313623985|gb|EFR94084.1| ATP-dependent protease HslVU, ATPase subunit [Listeria innocua FSL
           J1-023]
          Length = 469

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/468 (41%), Positives = 304/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDETAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  ++  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +    +  D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469


>gi|16800386|ref|NP_470654.1| ATP-dependent protease ATP-binding subunit HslU [Listeria innocua
           Clip11262]
 gi|21759184|sp|Q92C73|HSLU_LISIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|16413791|emb|CAC96549.1| clpY [Listeria innocua Clip11262]
          Length = 469

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/468 (41%), Positives = 304/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGSMNQPDEPAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  ++  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +    +  D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469


>gi|157363639|ref|YP_001470406.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga
           lettingae TMO]
 gi|167017230|sp|A8F5A8|HSLU_THELT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157314243|gb|ABV33342.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga lettingae
           TMO]
          Length = 462

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/463 (47%), Positives = 318/463 (68%), Gaps = 27/463 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    N +P+EIV ELD+YIIGQ  AK+AVAIA+RNR RRQ+LP   + E++PKNIL++G
Sbjct: 1   MTNFDNLTPKEIVRELDKYIIGQYQAKKAVAIAIRNRIRRQKLPDIWQKEVLPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ ++RDLV++++N+V++ R +
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMVRDLVEISVNMVKKERME 120

Query: 121 EVREQASINAEERILDALVGKTATSN--------------------------TREVFRKK 154
           +V+++A    EERILDAL+ ++                               RE  R+K
Sbjct: 121 QVKDKAEQMVEERILDALIPESRKPQNISFMGLFTASQQQQPSPEERRSLRQKREEIRQK 180

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           LR+GE+ ++ I+IE+    S        G      ++L  +   +M   R+KK  M+V +
Sbjct: 181 LRNGELENEMIEIEIEKEISPFIGALGQGELEDLGIDLGSMLGSLMPKTRQKKR-MTVSE 239

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L+  ES++LIDMD   +++++  +N GI+F+DE DKI  + SG+G  VSR+GVQRD
Sbjct: 240 ARRTLLPIESEKLIDMDKATQEALERAQNRGIIFIDELDKIAVKSSGSGPDVSRQGVQRD 299

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLP+VEG+++ TKYG + TD+ILFI SGAFH+SRP+DL+PE+QGRFP+RV L SL + DF
Sbjct: 300 LLPIVEGTTIMTKYGPVRTDYILFIGSGAFHMSRPSDLIPELQGRFPIRVELSSLTRKDF 359

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + E+ +  QY+ L+ TEGI L FTED I+ +A +A  LN  + +IGARRL TV+E
Sbjct: 360 VRILVEPENAITKQYQALLSTEGIELIFTEDGIEEMAKIAYELNQRLENIGARRLYTVVE 419

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +VLE+ISF A D+QEK ++IDA+YV   + +  S+ D+  +IL
Sbjct: 420 KVLEEISFEAPDVQEKKIIIDAKYVMGKLENIISDEDVSSYIL 462


>gi|115353190|ref|YP_775029.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           ambifaria AMMD]
 gi|122321966|sp|Q0BAX8|HSLU_BURCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|115283178|gb|ABI88695.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria AMMD]
          Length = 447

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 317/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRTKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDVLLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVEHALGEVSQDEDLSRYVL 447


>gi|328475123|gb|EGF45907.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 220]
 gi|332311724|gb|EGJ24819.1| ATP-dependent protease ATPase subunit HslU [Listeria monocytogenes
           str. Scott A]
          Length = 469

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   ITLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDEL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|313609076|gb|EFR84790.1| ATP-dependent protease HslVU, ATPase subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 472

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/468 (42%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 7   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 67  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 245 VSVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472


>gi|238028912|ref|YP_002913143.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           glumae BGR1]
 gi|237878106|gb|ACR30439.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae
           BGR1]
          Length = 444

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/446 (48%), Positives = 312/446 (69%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
              AE+RILD L+ +                 + TR+ FRK+LR+G + DKEI++++   
Sbjct: 121 QDQAEDRILDILLPQPRAVGFGSNAESANEDNNATRQTFRKRLREGALDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            + +     PG   +    +  +FS  +G G+K + ++ +++    L  +E+ +L++ + 
Sbjct: 181 QAGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAGKLLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++V+TKYG I
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKIASRNHEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 RTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA+VA ++N    +IGARRL TV+E++LED+SF+A +   ++
Sbjct: 359 LLATEEVQLEFAADGIRRLAEVAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA YV   +G+   + D+  ++L
Sbjct: 419 VTIDAGYVDRALGEVSKDEDLSRYVL 444


>gi|217964578|ref|YP_002350256.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes HCC23]
 gi|254802309|sp|B8DG52|HSLU_LISMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217333848|gb|ACK39642.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes HCC23]
 gi|307570858|emb|CAR84037.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           monocytogenes L99]
          Length = 469

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|107024023|ref|YP_622350.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia AU 1054]
 gi|116691110|ref|YP_836733.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia HI2424]
 gi|170734442|ref|YP_001766389.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           cenocepacia MC0-3]
 gi|254246899|ref|ZP_04940220.1| Heat shock protein HslU [Burkholderia cenocepacia PC184]
 gi|122978617|sp|Q1BSM8|HSLU_BURCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221465|sp|A0KBG3|HSLU_BURCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|238688620|sp|B1K0G2|HSLU_BURCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|105894212|gb|ABF77377.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia AU 1054]
 gi|116649199|gb|ABK09840.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia HI2424]
 gi|124871675|gb|EAY63391.1| Heat shock protein HslU [Burkholderia cenocepacia PC184]
 gi|169817684|gb|ACA92267.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           cenocepacia MC0-3]
          Length = 447

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVAQDEDLSRYVL 447


>gi|119357347|ref|YP_911991.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354696|gb|ABL65567.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeobacteroides DSM 266]
          Length = 495

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 211/468 (45%), Positives = 311/468 (66%), Gaps = 39/468 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV+ LD+YIIGQ +AK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVGK
Sbjct: 30  LTPNQIVALLDKYIIGQSEAKKSVAIALRNRLRRQNVGDELRDEIMPNNIIMIGPTGVGK 89

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+A
Sbjct: 90  TEIARRLAKMAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRTEKSEEVREKA 149

Query: 127 SINAEERILDALVGKTATSN-------------------------------TREVFRKKL 155
           ++  EER+LD L+   + S+                               +R+   ++L
Sbjct: 150 AVLVEERLLDILLPPVSHSHEEQEDRDAENEEMQVFDASQEVDKAKENNRKSRKKMLERL 209

Query: 156 RDGEISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           R G++ D++I++E+   +    +  F   G        + +L S +    ++KK R+S+ 
Sbjct: 210 RQGKLEDRQIEMEITGDAPGGMMQIFGPMGQMEEIGGIMQDLMSGL--PRKRKKRRVSIA 267

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREG 270
           +    L ++E  +LIDMD V +++I  VE  GIVF+DE DKI A  SG+G     VSREG
Sbjct: 268 EARKILEQEEVQKLIDMDAVIKEAINKVEQSGIVFIDEIDKIAAPSSGSGGKGPDVSREG 327

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL 
Sbjct: 328 VQRDLLPIVEGSNVATKYGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLT 387

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + DF  ILT  ++ LI QYK L+KTEG+ L FT+ +I  +A  A  +N +V +IGARRL 
Sbjct: 388 EEDFYKILTQPKNALIKQYKALLKTEGVELSFTDGAILEIAKTAAKVNESVENIGARRLH 447

Query: 391 TVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+M  +LE++ F+  + + ++ + ID   V+  +    ++ D+  +IL
Sbjct: 448 TIMTNLLEELMFNIPENVTDEEIEIDETMVKEKLNHVAADRDLSQYIL 495


>gi|289548465|ref|YP_003473453.1| heat shock protein HslVU, ATPase HslU [Thermocrinis albus DSM
           14484]
 gi|289182082|gb|ADC89326.1| heat shock protein HslVU, ATPase subunit HslU [Thermocrinis albus
           DSM 14484]
          Length = 448

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/443 (48%), Positives = 312/443 (70%), Gaps = 10/443 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P  IV EL RY++GQ++AK+AVAIALRNRWRRQ+LP  +RDE+ PKN+L++GPT
Sbjct: 8   LLEELTPARIVEELSRYVVGQEEAKKAVAIALRNRWRRQKLPEHIRDEVAPKNLLMIGPT 67

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L  APF+KVE TK+TEIGYVGR+VE ++R+LV+V+  +V++ +   V
Sbjct: 68  GVGKTEIARRLAQLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKLQSV 127

Query: 123 REQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           RE+A   AEERILD LV +            + RE  R+KLR GE+ +K ++I+V +   
Sbjct: 128 RERARRAAEERILDYLVPQQLSFGHRSPQDLSRREAIREKLRSGELDEKYVEIDVQEKMP 187

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            I     P G       +  +   V+    +K+ ++ V++    L ++E+++LID + V 
Sbjct: 188 PIVGIAGPPGLEELEEQIRNMLGGVLSG--RKRRKVKVKEALHLLEQEEAEKLIDQEEVA 245

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           R++I   EN+GI+F+DE DKI  +  G G GVSREGVQRDLLP+VEG+ V TKYG + TD
Sbjct: 246 REAIYRAENFGIIFIDEIDKIAIKTPGVGPGVSREGVQRDLLPIVEGTVVKTKYGPVRTD 305

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF+ IL +  + L  QY EL+K
Sbjct: 306 HILFIAAGAFHMSKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPRNALTKQYIELLK 365

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ L+FT+D+I+A+A +A  +N+ + +IGARRL T+ME++LEDISF+A +L  + ++I
Sbjct: 366 TEGVQLEFTDDAIEAIAQLAEEVNNRMENIGARRLHTLMEKLLEDISFNAPELSGQRIII 425

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D  +V+  +     + ++  +IL
Sbjct: 426 DERFVKAKLEGLARDVEVSKYIL 448


>gi|56964039|ref|YP_175770.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus clausii
           KSM-K16]
 gi|62286750|sp|Q5WFQ1|HSLU_BACSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56910282|dbj|BAD64809.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit [Bacillus
           clausii KSM-K16]
          Length = 463

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 307/465 (66%), Gaps = 32/465 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +PREIV  L++YI+GQ  AKR+VA+ALRNR+RR +L   +R+E+ PKNIL++GPT
Sbjct: 1   MTSTLTPREIVERLNQYIVGQDGAKRSVAVALRNRYRRTKLDPSMREEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E R   V
Sbjct: 61  GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRLVKEERVALV 120

Query: 123 REQASINAEERILDALVGKTATS-----------------------------NTREVFRK 153
           +++A   A++R+++ LV                                   N +    +
Sbjct: 121 KDEAKQLADKRLIELLVPSMKKETNYKNPFEMLFSQPDKEEEEDGEEELTRANLKRKMAE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           KL+ GE+ ++ + +EV + +    + F    G     +N+ E+ S +M   +KKK RM+V
Sbjct: 181 KLKQGELEERTVTVEVTEQNHGFMDLFQGGAGMEQMGMNMQEMLSNMM-PKKKKKRRMTV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +    L  +E+ +LIDMD V +++I   E  GI+F+DE DK+  ++   G  VSREGVQ
Sbjct: 240 AEARGVLAEEEAQKLIDMDDVTQEAITRAEQLGIIFIDEIDKVAGKNDQ-GANVSREGVQ 298

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++PADL+PE+QGRFP+RV L+SL+  
Sbjct: 299 RDILPIVEGSTVVTKYGAVKTDHILFIAAGAFHMAKPADLIPELQGRFPIRVELQSLSVD 358

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ L  QY+ L++TEGI + F+++++  +A +A  +N    +IGARRL T+
Sbjct: 359 DFVRILVEPDNALTKQYEALLQTEGIEMKFSDEAVRKIATIASEVNQETENIGARRLHTL 418

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LED+SF A+D+  +T+ I  +YV   +G      D+  FIL
Sbjct: 419 LEKLLEDLSFEAADIHLETLEITEQYVEEKLGSIAKNRDLSQFIL 463


>gi|332799168|ref|YP_004460667.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Tepidanaerobacter sp. Re1]
 gi|332696903|gb|AEE91360.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Tepidanaerobacter sp. Re1]
          Length = 465

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/465 (43%), Positives = 311/465 (66%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++I+ EL++YI+GQ+DAK++VAIALRNR+RRQ L  +++DE++PKNIL++GPTGVG
Sbjct: 3   NLTPKKIIEELNKYIVGQEDAKKSVAIALRNRYRRQMLSDEIKDEVIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+  + + V+++
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKTEKIEAVKDK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFR--------------------------------- 152
           A+  A ++I   L      + +   F                                  
Sbjct: 123 AAELANQKIAAILCPIPTKTVSVNPFETIFGSSKQNYSTDNEEMYTQKVKTARENQKEIL 182

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +K+++G +  + ++IE+ D    +       G     +N  ++F  +    RKKK  +++
Sbjct: 183 EKVKNGSLDKELVEIEIEDNLPSMFEIFSASGMEEIGINFQDMFEGLF-PKRKKKCTVTI 241

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L ++E+ +LIDMD V  +SI+  E+ GI+F+DE DKI  ++S  G  VSREGVQ
Sbjct: 242 ENARRILTQEEAQKLIDMDEVINESIRKAEDSGIIFIDEIDKIAGKES-YGQDVSREGVQ 300

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP++EGS+V TKYG I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL + 
Sbjct: 301 RDILPIIEGSTVVTKYGPIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLTEE 360

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D + ILT+ +++LI QY  L++TEGI + F+ED+ID +  VAV++N    +IGARRL T+
Sbjct: 361 DLKKILTEPKNSLIKQYTALLETEGIKISFSEDAIDEIVKVAVHVNHESENIGARRLHTI 420

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME++LEDISF+A DL +  ++ID +YV   + +   + D+  +IL
Sbjct: 421 MEKLLEDISFNAPDLLQSQIIIDRDYVNQKLKNIVKDKDLSMYIL 465


>gi|224499050|ref|ZP_03667399.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           Finland 1988]
          Length = 469

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|226223882|ref|YP_002757989.1| ATP-dependent Clp protease-like protein [Listeria monocytogenes
           Clip81459]
 gi|254824660|ref|ZP_05229661.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL J1-194]
 gi|254852667|ref|ZP_05242015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL R2-503]
 gi|254932404|ref|ZP_05265763.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes HPB2262]
 gi|254994004|ref|ZP_05276194.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL J2-064]
 gi|300765315|ref|ZP_07075299.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes FSL N1-017]
 gi|62286832|sp|Q720E2|HSLU_LISMF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|259491375|sp|C1L2I7|HSLU_LISMC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|225876344|emb|CAS05053.1| Putative ATP-dependent Clp protease-like protein [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605985|gb|EEW18593.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL R2-503]
 gi|293583961|gb|EFF95993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes HPB2262]
 gi|293593899|gb|EFG01660.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria
           monocytogenes FSL J1-194]
 gi|300513998|gb|EFK41061.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes FSL N1-017]
          Length = 469

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   ITLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469


>gi|149173422|ref|ZP_01852052.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148847604|gb|EDL61937.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 454

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/454 (46%), Positives = 311/454 (68%), Gaps = 24/454 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELD++I+GQ DAKRAVAIALRNRWR QQLP +LR+E+ PKNI+++GPTGVG
Sbjct: 3   ELTPRQIVAELDKHIVGQDDAKRAVAIALRNRWRWQQLPDELRNEITPKNIIMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TK+TE+GY GR+VE ++RDLVD A N+VRE +R EV ++
Sbjct: 63  KTEITRRLAKLINAPFIKVEATKYTEVGYYGRDVESMVRDLVDSAKNLVREKKRVEVVDK 122

Query: 126 ASINAEERILDALVGKTATS--------------------NTREVFRKKLRDGEISDKEI 165
           A +  EER+LD L+ +                         TR+ FRK L  G + +KE+
Sbjct: 123 AKVRVEERLLDLLIPRPEWEASYSESTEEGKEENASERYERTRDKFRKMLSQGALEEKEV 182

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I +   SS +  F   G   + + +L  +F ++M   + K  +MSV++    L+  E +
Sbjct: 183 EISIDAKSSPVQVFSNMGMDQMDV-DLQGMFERIMPQ-QSKHRKMSVKEARGVLLEQEVE 240

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSS 283
            L+D D +  +++Q+ E  GIVF+DE DKI   + G   G  VSR+GVQRDLLP+VEG++
Sbjct: 241 GLMDKDAIAEEAVQLAERSGIVFIDELDKICTSEEGGNRGGDVSRQGVQRDLLPIVEGTT 300

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V T+ GS+ TD++LFIA+GAFH ++P+DL+PE+QGRFP+RV L+ L + DF  ILT+  S
Sbjct: 301 VQTRSGSVKTDYMLFIAAGAFHRTKPSDLMPELQGRFPIRVELQELTRDDFLRILTEPTS 360

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           ++ +QY+ L++TEG+ + F +D ++ LA +A ++N T  +IGARRL T++ER+LE++SF 
Sbjct: 361 SITMQYQALLETEGVKIKFEQDGLEELAKIAFDVNQTTQNIGARRLHTILERLLEEVSFE 420

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A DL+ K +VID  YV+  +     + D+  FIL
Sbjct: 421 APDLKTKKIVIDVPYVQQKLHSIVEDEDLSKFIL 454


>gi|313901988|ref|ZP_07835404.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467777|gb|EFR63275.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter
           subterraneus DSM 13965]
          Length = 480

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/466 (46%), Positives = 308/466 (66%), Gaps = 36/466 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELDRYI+GQ +AKRAVAIALRNRWRRQQLP  LRDE+ PKNIL++GPTGVGK
Sbjct: 16  LTPRQIVAELDRYIVGQAEAKRAVAIALRNRWRRQQLPPHLRDEVAPKNILMIGPTGVGK 75

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDL++ AI +V+  R   V ++A
Sbjct: 76  TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLLETAIRMVKAERVAAVEDRA 135

Query: 127 SINA----------------------EERILDAL-------------VGKTATSNTREVF 151
              A                       E +L +L               +      R+  
Sbjct: 136 RAAADDRLLDVLVPPPRRRPQRAGSPWEMLLGSLGAGMPGPAEPARPEEEEDWRRHRQEA 195

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +LR G++ D+ ++IEV D +  + +     G     LN+ +L  K     RK++ R+ 
Sbjct: 196 AARLRSGQLEDQVVEIEVEDQAPPMVDILGGPGLEEVTLNVQDLL-KDWLPRRKRRRRLP 254

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L ++E+ +LIDMD V  ++I+  E  GIVF+DE DKI  R+ G+G  VSREGV
Sbjct: 255 VREAREVLAQEEAQKLIDMDQVVAEAIRRTEQAGIVFIDEIDKIAGRERGHGPDVSREGV 314

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V T++G + TDHILFIA+GAFH++RP+DL+PE+QGRFP+RV L+ L +
Sbjct: 315 QRDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHIARPSDLIPELQGRFPIRVELQPLTR 374

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D+++ALAD+A   N    +IGARRL T
Sbjct: 375 DDFKRILTEPDNALLRQYQALLATDGVELEFTPDAVEALADMAARANQQAENIGARRLHT 434

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LE ++F A D  +  VV+DA +VR  +     + D+  +IL
Sbjct: 435 LLERLLEPVAFDAPDALQGKVVVDAAFVRQRLEGVLQDQDLSRYIL 480


>gi|171320571|ref|ZP_02909595.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MEX-5]
 gi|171094198|gb|EDT39281.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           ambifaria MEX-5]
          Length = 447

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKE+++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S+ +     PG   +    +  +FS  +G G+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 SAGVDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F  D I  LA++A  +N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVERALGEVSQDEDLSRYVL 447


>gi|261855923|ref|YP_003263206.1| heat shock protein HslVU, ATPase HslU [Halothiobacillus
           neapolitanus c2]
 gi|261836392|gb|ACX96159.1| heat shock protein HslVU, ATPase subunit HslU [Halothiobacillus
           neapolitanus c2]
          Length = 446

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/448 (48%), Positives = 304/448 (67%), Gaps = 17/448 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ELD++I+GQ  AKRAVAIALRNRWRRQQ+   LR E+ PKNIL++GPTGV
Sbjct: 1   MNLTPKEIVTELDKHIVGQAAAKRAVAIALRNRWRRQQVGEPLRGEITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+ + + R+    EVR+
Sbjct: 61  GKTEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADIGLKMQRQIAMVEVRD 120

Query: 125 QASINAEERILDALVG---------------KTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +A I  E R+LDAL+                  A  NTRE FR+KLR+GE+ DKE++IE+
Sbjct: 121 KAQIAGENRVLDALLPAPRDEGWNSTADSHRDEAYRNTREKFRQKLRNGELDDKEVEIEL 180

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
             T+S+I     PG   +    +  +F  V   G+ +  R+ V +    L  +E+  L++
Sbjct: 181 RQTASNIDILSPPGMEEMA-SQIRGMFQNV-NQGKTQTRRLPVSEALKLLTEEEAGNLVN 238

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V   +++ VE +GIVF+DE DK+  R    G  VSREGVQRDLLP++EGS+V+TK G
Sbjct: 239 EEEVRAQALERVEQHGIVFIDEIDKVAKRGEYGGGEVSREGVQRDLLPIIEGSTVNTKLG 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+  DF  ILT+ ++ LI Q+
Sbjct: 299 MVKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELEALSAKDFVRILTEPDAALIRQH 358

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L+ +E   + F++++I  +A++A  +N    +IGARRL TVME +LE +SF A     
Sbjct: 359 TALLASEQFEVQFSDEAIQRIAEIAFEVNRRTENIGARRLHTVMEHLLEALSFDADTRSG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +T+ IDA++V   +G    + D+  FIL
Sbjct: 419 ETMNIDADFVDQRLGALAEDEDLSRFIL 446


>gi|325525688|gb|EGD03448.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia sp.
           TJI49]
          Length = 447

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/446 (48%), Positives = 318/446 (71%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RES   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G+G  VSR+GVQRDLLPLVEG++V+TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F ED I  LA++A ++N    +IGARRL TV+E++LE++SFSA +   + 
Sbjct: 362 LLATEDVGLEFAEDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDA+YV   +G+   + D+  ++L
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447


>gi|315302918|ref|ZP_07873651.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL
           F6-596]
 gi|313628714|gb|EFR97114.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL
           F6-596]
          Length = 469

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/466 (42%), Positives = 303/466 (65%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           LT   +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LTSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R +A  NAE+R++  L        T                               R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTASPNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIELIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMKNRDLTQFIL 469


>gi|116872712|ref|YP_849493.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123466231|sp|A0AI82|HSLU_LISW6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116741590|emb|CAK20714.1| heat shock protease HslVU, ATPase subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 469

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/468 (41%), Positives = 303/468 (64%), Gaps = 33/468 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
            VR +A  NAE+R++  L        T                               R 
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQSEETTEEEVDQELKNKRS 183

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +
Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSRE
Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMKNKDLTQFIL 469


>gi|312132114|ref|YP_003999454.1| heat shock protein hslvu, atpase subunit hslu [Leadbetterella
           byssophila DSM 17132]
 gi|311908660|gb|ADQ19101.1| heat shock protein HslVU, ATPase subunit HslU [Leadbetterella
           byssophila DSM 17132]
          Length = 455

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/450 (45%), Positives = 302/450 (67%), Gaps = 19/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +IV+ELD+YIIGQ +AK+ VAIALRNRWRR     +++ E++P NIL++G TGVG
Sbjct: 7   NLTPGQIVAELDKYIIGQTEAKKNVAIALRNRWRRMNASPEMQAEIIPNNILMIGSTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ +IN+V+ ++++EV+ +
Sbjct: 67  KTEIARRLAKIAEAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSINMVKAAKKEEVKIK 126

Query: 126 ASINAEERILDALVGK----------------TATSNTREVFRKKLRDGEISDKEIDIEV 169
           A    E++IL+ L+                       TRE FR+KL+ GE++ ++I+I++
Sbjct: 127 AQEAVEDKILNILIPPVTHKASEVLQDGKSEYELNQETREAFRQKLKKGELNHRKIEIDI 186

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A TS+            V ++N+ E+   +M   + KK ++S+++    ++ +ES +LID
Sbjct: 187 AQTSAAPIGVMGGPIDEVSMMNIQEMIGGLMPKNK-KKRKVSIEEAQKIMLEEESSKLID 245

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MD V  ++I   EN GI+F+DE DK+ +  S  G  VSREGVQRDLLP+VEGS+V+TK+G
Sbjct: 246 MDEVKEEAIWKAENLGIIFIDEIDKVASSGSKAGPDVSREGVQRDLLPIVEGSTVNTKHG 305

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           +I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL + +F  IL   ++ L  QY
Sbjct: 306 AIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELESLTEENFLQILKAPKNALTKQY 365

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-- 407
           + +++ E I L F ED++  LA +A   N+ + +IGARRLQTVM  +L DI F   +   
Sbjct: 366 QAMLEAEDIQLQFEEDALKELASIAYQANTEMENIGARRLQTVMSLLLNDILFDVPERIA 425

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              T+ I  E VR  + +     D+  +IL
Sbjct: 426 PGTTLSIGKELVRQKLSNLIKNKDLSQYIL 455


>gi|323705451|ref|ZP_08117026.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535353|gb|EGB25129.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 460

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 211/459 (45%), Positives = 301/459 (65%), Gaps = 28/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV  LD+YI+GQ  AKR+VA+ALRNR+RR  LP +++DE+ PKNIL++GPTGVG
Sbjct: 3   NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRYRRNLLPDEIKDEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ +   V  +
Sbjct: 63  KTEIARRIAKLIEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122

Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158
           A   AEERILD L+    +   +  F                           R+K+R G
Sbjct: 123 AKELAEERILDYLINGRKSKRQKNPFEFLFNAQGDEDTHDDDGQEIKMQKEQLREKIRSG 182

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E++D+ I+IE+ D+SS I       GA    +NL ++F+ ++   +K K  + + +    
Sbjct: 183 ELNDRIIEIEITDSSSPILEMYSNLGAEEMNINLQDMFADILPKKKKYKK-VPIGEAKKI 241

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  +E+  LIDMD V  ++I+  E  GI+F+DE DKI      NG  VSREGVQRD+LP+
Sbjct: 242 LESEEAQNLIDMDEVIDEAIRRTEQDGIIFIDEIDKIAGSGYTNGPDVSREGVQRDILPI 301

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L K DF  IL
Sbjct: 302 VEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPLTKEDFIRIL 361

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L  QY  L+ TEG+ +++T+D ID +A++A  +N    DIGARRL TVME++ E
Sbjct: 362 KEPKNALTKQYAALLSTEGVEIEYTDDGIDRIAEIAYIINQQSEDIGARRLHTVMEKLFE 421

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +SF A D+    V+ID  Y+   + D  +  D+  +IL
Sbjct: 422 KLSFEAPDITGSKVIIDKNYIDEQLKDNLNRFDVNKYIL 460


>gi|53717845|ref|YP_106831.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei K96243]
 gi|76812254|ref|YP_331799.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei 1710b]
 gi|226199758|ref|ZP_03795309.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pakistan 9]
 gi|237810380|ref|YP_002894831.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei MSHR346]
 gi|254182215|ref|ZP_04888812.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1655]
 gi|254188141|ref|ZP_04894653.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258674|ref|ZP_04949728.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1710a]
 gi|62286777|sp|Q63YI4|HSLU_BURPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123758076|sp|Q3JXA4|HSLU_BURP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52208259|emb|CAH34190.1| ATP-dependent Hsl protease ATP-binding subunit [Burkholderia
           pseudomallei K96243]
 gi|76581707|gb|ABA51182.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1710b]
 gi|157935821|gb|EDO91491.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184212753|gb|EDU09796.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1655]
 gi|225928109|gb|EEH24145.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504043|gb|ACQ96361.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei MSHR346]
 gi|254217363|gb|EET06747.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 447

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 362 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 422 VTIDSAYVDHALGEVSKDEDLSRYVL 447


>gi|149925902|ref|ZP_01914165.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
 gi|149825190|gb|EDM84401.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
          Length = 443

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/445 (49%), Positives = 300/445 (67%), Gaps = 15/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P  IV EL++ I+GQ  AKRAVA+ALRNRWRR Q+P  LR E+ PKNIL++GPTGV
Sbjct: 2   TQLTPSNIVEELNKNIVGQDAAKRAVAVALRNRWRRMQVPMPLRQEITPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+  VRE  +  V E
Sbjct: 62  GKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLIEIALKQVREEAQLGVVE 121

Query: 125 QASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +A   A +R+LDAL+                 + TR  FR+KL  GE+ DKEI+IEVA  
Sbjct: 122 EAKSAAFDRVLDALLPPARDFGFTEKAPEPDENRTRIRFREKLFAGELDDKEIEIEVAAA 181

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S  +     PG   +    L  +F  +   G+KK  +M V +    +  +E+ + ++ + 
Sbjct: 182 SPSLDVVGPPGMEEL-TGQLQSMFQNI-SGGKKKLRKMKVAEALKAIQDEEAAKRVNEEE 239

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V   +I  VE  GIVFLDE DKI  +  G G  VSR+GVQRDLLPLVEG++V+TKYG I 
Sbjct: 240 VRAKAIARVEQDGIVFLDEIDKIATKADGRGTDVSRQGVQRDLLPLVEGTTVNTKYGMIK 299

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILF+ASGAFH+SRP+DL+PE+QGRFP+RV L+SL   DF+ ILT T++ L  QYK L
Sbjct: 300 TDHILFVASGAFHLSRPSDLIPELQGRFPIRVELESLTVDDFKRILTSTDACLTEQYKAL 359

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + T+G+ L+FT++ +  LA++A  +N    +IGARRL TVMER+LE+++F A D Q + V
Sbjct: 360 LATDGVELEFTDEGVRRLAEIAFTVNEKTENIGARRLYTVMERLLEEVAFEA-DGQPRPV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I AE+V   +G+     D+  FIL
Sbjct: 419 KITAEFVDSRLGEAAKSEDLAQFIL 443


>gi|167822220|ref|ZP_02453691.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 9]
 gi|167843815|ref|ZP_02469323.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei B7210]
          Length = 444

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 419 VTIDSAYVDHALGEVSKDEDLSRYVL 444


>gi|315282104|ref|ZP_07870589.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL
           S4-120]
 gi|313614250|gb|EFR87909.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL
           S4-120]
          Length = 470

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/467 (41%), Positives = 300/467 (64%), Gaps = 33/467 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 5   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 64

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 65  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 124

Query: 121 EVREQASINAEERILDALVGKTATSNT-------------------------------RE 149
               +A  NAE+R++  L        T                               R 
Sbjct: 125 LXXXKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDEPAEEEVDQELKNKRS 184

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               +L++GE+ D+ + +EV +  + +  FD+  G  +  +N  +     M   +KKK +
Sbjct: 185 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMNGMQDALSGMFPAKKKKRK 242

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L  DE+ +LID D +  + I   E  GI+F+DE DKI +++ G    VSRE
Sbjct: 243 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGIIFIDEIDKIASKEGGGNAQVSRE 302

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L
Sbjct: 303 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 362

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL
Sbjct: 363 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 422

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFI 436
            T++E++LED+ F A ++  +++ +   YV   +       D+  FI
Sbjct: 423 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFI 469


>gi|53724452|ref|YP_104727.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei ATCC 23344]
 gi|121600281|ref|YP_994209.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei SAVP1]
 gi|124386545|ref|YP_001028138.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei NCTC 10229]
 gi|126439830|ref|YP_001057243.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           pseudomallei 668]
 gi|126448941|ref|YP_001082949.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           mallei NCTC 10247]
 gi|126452107|ref|YP_001064483.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 1106a]
 gi|134284096|ref|ZP_01770790.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 305]
 gi|167001361|ref|ZP_02267160.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           PRL-20]
 gi|167813705|ref|ZP_02445385.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 91]
 gi|167892313|ref|ZP_02479715.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 7894]
 gi|217424936|ref|ZP_03456432.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 576]
 gi|238563255|ref|ZP_00439195.2| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242315412|ref|ZP_04814428.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254174829|ref|ZP_04881490.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 10399]
 gi|254197069|ref|ZP_04903493.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei S13]
 gi|254201827|ref|ZP_04908191.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           FMH]
 gi|254207156|ref|ZP_04913507.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           JHU]
 gi|254295746|ref|ZP_04963203.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 406e]
 gi|254359662|ref|ZP_04975933.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           2002721280]
 gi|62286769|sp|Q62F00|HSLU_BURMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221466|sp|A3MRR3|HSLU_BURM7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221467|sp|A2S869|HSLU_BURM9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221468|sp|A1V7K6|HSLU_BURMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221469|sp|A3NQ62|HSLU_BURP0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221470|sp|A3N4H2|HSLU_BURP6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|52427875|gb|AAU48468.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 23344]
 gi|121229091|gb|ABM51609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           SAVP1]
 gi|124294565|gb|ABN03834.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           NCTC 10229]
 gi|126219323|gb|ABN82829.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 668]
 gi|126225749|gb|ABN89289.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 1106a]
 gi|126241811|gb|ABO04904.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           NCTC 10247]
 gi|134244548|gb|EBA44652.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 305]
 gi|147747721|gb|EDK54797.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           FMH]
 gi|147752698|gb|EDK59764.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           JHU]
 gi|148028876|gb|EDK86808.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           2002721280]
 gi|157805718|gb|EDO82888.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 406e]
 gi|160695874|gb|EDP85844.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei
           ATCC 10399]
 gi|169653812|gb|EDS86505.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei S13]
 gi|217391956|gb|EEC31982.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia
           pseudomallei 576]
 gi|238521088|gb|EEP84542.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242138651|gb|EES25053.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia
           pseudomallei 1106b]
 gi|243062873|gb|EES45059.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei
           PRL-20]
          Length = 447

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 362 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 422 VTIDSAYVDRALGEVSKDEDLSRYVL 447


>gi|46907506|ref|YP_013895.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|46880774|gb|AAT04072.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|328468568|gb|EGF39568.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes 1816]
          Length = 463

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/463 (42%), Positives = 301/463 (65%), Gaps = 33/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPTGVG
Sbjct: 3   QLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   VR +
Sbjct: 63  KTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLVRVK 122

Query: 126 ASINAEERILDALVGKTATSNT-------------------------------REVFRKK 154
           A  NAE+R++  L        T                               R     +
Sbjct: 123 AEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQIEWR 182

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++V++
Sbjct: 183 LQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVTVRE 240

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L  DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGVQRD
Sbjct: 241 AKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRD 300

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L + DF
Sbjct: 301 ILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDF 360

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T++E
Sbjct: 361 YKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILE 420

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 421 KLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 463


>gi|78186793|ref|YP_374836.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           luteolum DSM 273]
 gi|78166695|gb|ABB23793.1| Heat shock protein HslU [Chlorobium luteolum DSM 273]
          Length = 482

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 217/466 (46%), Positives = 308/466 (66%), Gaps = 37/466 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVGK
Sbjct: 19  LTPHQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQMVGDELRDEIMPNNIIMIGPTGVGK 78

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR  + +EVRE+A
Sbjct: 79  TEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREKA 138

Query: 127 SINAEERILDALVGK-----------------------------TATSNTREVFRKKLRD 157
           +   E+R+LD L+                                A   TRE  R++LR 
Sbjct: 139 ASLVEDRLLDILLPPVQASAEQEESFPEDGEEGALLTTGEERAEDANRRTREKMRQRLRG 198

Query: 158 GEISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           G++ +++I+++V+  S    +  F   G        + +L S +    ++KK R+S+   
Sbjct: 199 GKLEERQIEMDVSGDSQGGMMQIFGPLGQMEEIGGIMQDLMSGL--PRKRKKRRVSIADA 256

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQ 272
              L ++E  +LIDMD+V +++I  VE  GIVF+DE DKI A  +G G     VSREGVQ
Sbjct: 257 RRILEQEEVQKLIDMDSVVKEAITKVEQSGIVFIDEIDKIAAPSTGAGTKGPDVSREGVQ 316

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + 
Sbjct: 317 RDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEE 376

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF LILT   + LI QY+ L+ TEG+ L+FTE SI  +A  A  +N +V +IGARRL T+
Sbjct: 377 DFFLILTQPRNALIKQYRALIGTEGVELEFTEGSIREIARTAAVVNESVENIGARRLHTI 436

Query: 393 MERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           M  +LE++ F   + L    + ID + V+  +    S+ D+  +IL
Sbjct: 437 MTNLLEELMFDIPENLSSGKITIDEKMVKDKLSHVASDRDLSQYIL 482


>gi|167717564|ref|ZP_02400800.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei DM98]
 gi|167736607|ref|ZP_02409381.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 14]
 gi|167909030|ref|ZP_02496121.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 112]
 gi|167917069|ref|ZP_02504160.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei BCC215]
          Length = 444

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/446 (47%), Positives = 316/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 419 VTIDSAYVDRALGEVSKDEDLSRYVL 444


>gi|320528983|ref|ZP_08030075.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis
           F0399]
 gi|320138613|gb|EFW30503.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis
           F0399]
          Length = 464

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/456 (48%), Positives = 308/456 (67%), Gaps = 27/456 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL  D+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR  + +EV+E+A+
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129

Query: 128 INAEERILDALVGKTATSNT-------------------------REVFRKKLRDGEISD 162
            NAEER++D  V     S                           R+  RK+L  GE+ D
Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEEPAEEKQEPPKYQAGRDWVRKRLHAGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + I+I+V ++S  ++             NL  +    +   R+++ ++SV++       +
Sbjct: 190 EMIEIDVEESSRPMAGMFAGSSLEGVGDNLQSMIGS-LVPKRRRRRKVSVRQARKLFTAE 248

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEG 281
           E+D+L+DMD V  +++   E  GIVFLDE DKI       +G  VSREGVQRD+LP+VEG
Sbjct: 249 EADKLVDMDVVADEAVHAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVEG 308

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+ 
Sbjct: 309 STVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTEP 368

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ LI QY  L+  EG+ L F +D++  LA++A  +N    DIGARRL T++E++LED+S
Sbjct: 369 KNALIKQYAALLGAEGVTLTFGDDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLEDLS 428

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A DL EK +VID  YV  ++ D   + DM  FIL
Sbjct: 429 FDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464


>gi|167040335|ref|YP_001663320.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter
           sp. X514]
 gi|300914419|ref|ZP_07131735.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X561]
 gi|307724345|ref|YP_003904096.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X513]
 gi|259491382|sp|B0K1T6|HSLU_THEPX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166854575|gb|ABY92984.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X514]
 gi|300889354|gb|EFK84500.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X561]
 gi|307581406|gb|ADN54805.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           sp. X513]
          Length = 459

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/458 (45%), Positives = 315/458 (68%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGKTATS--------------------------NTREVFRKKLRDGE 159
           A   AE+R++D +VGK                                RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIVGKRKKQAKNPFEMLFNYPAAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMMEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVSLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF+A DL+ + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFNAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459


>gi|219669729|ref|YP_002460164.1| ATP-dependent protease ATP-binding subunit HslU [Desulfitobacterium
           hafniense DCB-2]
 gi|254802303|sp|B8FRG8|HSLU_DESHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|219539989|gb|ACL21728.1| heat shock protein HslVU, ATPase subunit HslU [Desulfitobacterium
           hafniense DCB-2]
          Length = 458

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 217/459 (47%), Positives = 313/459 (68%), Gaps = 30/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V ELDRYI+GQ  AKRAVAIALRNR+RR  LP  +++E++PKNIL++GPTGVG
Sbjct: 3   QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+  + +EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------REVFRKKLRDGE 159
           A+  AE+R+   LV      N                           R   R++L  GE
Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + ++ I++EV D    + +F   G       NL ++ + ++   R K  +++V++    L
Sbjct: 183 LDEQVIEVEVEDNQPLLPDFLGTGM--EINTNLQDMMAGMLPKKRHK-RKVTVREARRIL 239

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ +LID D   +++I+ VE  G+VFLDE DKI  RD  +G  VSR GVQRD+LP+V
Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT
Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +S+LI QY  L++TEGI ++FTE++ID LA VA  +NS   +IGARRL T++ERVLE+
Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419

Query: 400 ISFSASDL-QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF AS+L ++ TV I+ EY++  +G+     D+  +IL
Sbjct: 420 LSFEASELPEDYTVTINREYIQHRLGNIVRNQDLSRYIL 458


>gi|160871613|ref|ZP_02061745.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella
           grylli]
 gi|159120412|gb|EDP45750.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella
           grylli]
          Length = 498

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 299/446 (67%), Gaps = 16/446 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV ELDR+IIGQ +AKRA+AIALRNR RR  L  +LRDE+ PKNIL++GP+GVG
Sbjct: 55  DLTPKQIVQELDRFIIGQNEAKRAIAIALRNRKRRMLLEPELRDEVTPKNILMIGPSGVG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I RR A++ G PF+K+E TKFTE+GY+GR+V+ I RDLVD A  ++RE     ++ Q
Sbjct: 115 KTEIGRRAAKITGCPFLKIEATKFTEVGYIGRDVDSIPRDLVDSAFKLLREEEITRLQPQ 174

Query: 126 ASINAEERILDALVGKT--------------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
               AE +ILD  V  +                S  R VFRKKL+ G++ DK+I+IE+A 
Sbjct: 175 VLEAAESKILDCFVPPSRATKNEAVDELKSKEKSIARNVFRKKLQAGQLDDKQIEIELAA 234

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
             + +     PG        L  +   +  S R +  RM V+     + ++E+ +L+D +
Sbjct: 235 LPAGVEIMGPPGM-EDMTSQLQNMLQNIGAS-RTRSRRMKVKDALMVIQKEEASKLLDEE 292

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + R +I+ VE YGIVF+DE DK+  R   +G  VSREGVQRDLLPL+EG +VSTKYG +
Sbjct: 293 DLKRKAIEWVEQYGIVFIDEIDKVCRRGETSGADVSREGVQRDLLPLIEGCTVSTKYGMV 352

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFH+S+P+DL+PE+QGR P+RV LK+L   DF  IL + +++LI+QY+ 
Sbjct: 353 RTDHILFIAAGAFHLSKPSDLVPELQGRLPIRVELKALTAKDFERILIEPQASLIVQYQA 412

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TEG++L+F + +I  +A++A +LN    +IGARRL TVMER+LE+ISF A+D  +K 
Sbjct: 413 LLNTEGLLLNFDKHAIQRIAEIAFDLNERTENIGARRLYTVMERLLEEISFEATDYTDKN 472

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           + I+  YV  H+     + D  HFIL
Sbjct: 473 LTINVNYVDKHLTSLAQDHDTSHFIL 498


>gi|295691591|ref|YP_003595284.1| heat shock protein ATPase subunit HslU [Caulobacter segnis ATCC
           21756]
 gi|295433494|gb|ADG12666.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter segnis
           ATCC 21756]
          Length = 430

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 247/433 (57%), Positives = 336/433 (77%), Gaps = 4/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+G  DAK+AVA+ALRNRWRR++ PAD+RDEL PKNILL+GPTGV
Sbjct: 2   TEFSPREIVSELDRYIVGHTDAKKAVAVALRNRWRRRRAPADIRDELTPKNILLIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR  V+ 
Sbjct: 62  GKTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVRDKRRAAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERILDAL G  +T+  RE FRKK+R GE+ DKE+++++ADT      F+IPG 
Sbjct: 122 KAEGAAEERILDALTGPGSTA-AREAFRKKIRAGELDDKEVELQLADTGGQ--TFEIPGQ 178

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               + NLS++  K  G GR+K  + +V   +  L+ +ESD+L+D + + ++++++ EN+
Sbjct: 179 PGAAVFNLSDMM-KSFGGGRQKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENH 237

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +    +G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 238 GIVFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NL+ Q++ LM TE + L FT+
Sbjct: 298 HVAKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLVRQHQALMATENVTLVFTD 357

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++IDALAD AV +N++V +IGARRLQT++E+V+E+ISF+A+D   +TV +DA YV+  +G
Sbjct: 358 EAIDALADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRGGETVTVDAAYVQERVG 417

Query: 425 DFPSETDMYHFIL 437
              +  D+  FIL
Sbjct: 418 ALAANADLSRFIL 430


>gi|226938939|ref|YP_002794010.1| ATP-dependent protease ATP-binding subunit HslU [Laribacter
           hongkongensis HLHK9]
 gi|226713863|gb|ACO73001.1| HslU [Laribacter hongkongensis HLHK9]
          Length = 448

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 228/452 (50%), Positives = 308/452 (68%), Gaps = 21/452 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +P+EIVSELD++IIGQ  AK+AVAIALRNRWRRQ +   L++E+ PKNIL++GPT
Sbjct: 1   MSAQMTPQEIVSELDKHIIGQAAAKKAVAIALRNRWRRQMVAEPLKNEITPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+   RE    + 
Sbjct: 61  GVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVETIIRDLADIAVKHAREQAIRDN 120

Query: 123 REQASINAEERILDALVGKT---------------ATSNTREVFRKKLRDGEISDKEIDI 167
           R +A   AE+RILDAL+                    ++TR+ FRK LR+G + DKEIDI
Sbjct: 121 RVRAEDAAEDRILDALLPPPRQPGFSGENVPAAERHDADTRQKFRKMLREGRLDDKEIDI 180

Query: 168 EVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           E+A  +  +  F     G +     L  LFS  MG GRKK  +M +++    +  +E+ +
Sbjct: 181 EIAAQAPQVQMFAPNMPGMNDLTEQLQGLFSN-MGGGRKKTQKMKIREALRVVTDEEAAK 239

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVS 285
           L++ + +   +IQ VE  GIVFLDE DK+ AR  G +G  VSR GVQRDLLPLVEG++VS
Sbjct: 240 LVNEEEIKLAAIQNVEQNGIVFLDEIDKVTARGEGMSGADVSRAGVQRDLLPLVEGTAVS 299

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG I+TDHILFIASGAFH+++P+DLLPE+QGRFP+RV L +L   DF  ILT+T++ L
Sbjct: 300 TKYGMIHTDHILFIASGAFHLAKPSDLLPELQGRFPIRVELAALAVDDFVQILTNTDACL 359

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY+ L+ TEG  LDFT+D I  +A++A  +N    +IGARRL TV+E++LE++SF A 
Sbjct: 360 TRQYQALLATEGTQLDFTDDGIRRMAEIAFQVNEKTENIGARRLHTVIEKLLEEVSFDA- 418

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +  ++ IDA YV   +       D+  +IL
Sbjct: 419 --RTGSITIDAAYVDTKLEGIAQREDLARYIL 448


>gi|167900810|ref|ZP_02488015.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei NCTC 13177]
          Length = 447

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/446 (46%), Positives = 315/446 (70%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 4   MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 64  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 124 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 183

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 184 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDEE 241

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           V   ++Q VE  GIVFLDE DKI +R+    G  VSR+GVQRDLLPLVEG++++TKYG +
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNHESGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+  DF  IL  T+++L+ QY+ 
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE + L+F +D I  LA++A  +N    +IGARRL TV+E++LE++SF+A +   ++
Sbjct: 362 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 421

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V ID+ YV   +G+   + D+  ++L
Sbjct: 422 VTIDSAYVDRALGEVSKDEDLSRYVL 447


>gi|327441060|dbj|BAK17425.1| ATP-dependent protease HslVU, ATPase subunit [Solibacillus
           silvestris StLB046]
          Length = 463

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/462 (42%), Positives = 304/462 (65%), Gaps = 33/462 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+I  +L+R+I+GQ+ AKRAVA+ALRNR+RR  L  +L+ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQITEQLNRHIVGQETAKRAVAVALRNRYRRSLLSEELKTEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APFIKVE TKFTE+GYVGR+VE ++RDLV+ +  +V++   + V++Q
Sbjct: 65  KTEIARRIAKLTNAPFIKVEATKFTEVGYVGRDVESMVRDLVEASRRLVKDEMFERVKDQ 124

Query: 126 ASINAEERILDALVGKTATSN------------------------------TREVFRKKL 155
           A  NA + ++  LV                                      R    + L
Sbjct: 125 AERNANDILVKLLVPSKVKEKLTQNPFEMLFGQKESSQEDTANQDEPEIRTRRAQITQDL 184

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           +DG++ ++ + IEV + +  + +  +PG        + ++ S +M   + KK ++ V+  
Sbjct: 185 KDGKLEEQWVTIEVTENAPSLFD-AMPGMNMDNANGMQDMLSNLM-PKKTKKRKVQVKDA 242

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L ++E+++LID D +  ++IQ  E  GI+F+DE DKI ++ S +   VSREGVQRD+
Sbjct: 243 RRLLTQEEANKLIDTDALSSEAIQRAEQAGIIFIDEIDKIASKGS-SSAEVSREGVQRDI 301

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF 
Sbjct: 302 LPIVEGSTVTTKYGTVKTDYMLFIAAGAFHISKPSDLIPELQGRFPIRVELEKLTKDDFV 361

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +LILQYK L++TEG+ L+FT+++I+ +A++A  +N    +IGARRL T++ER
Sbjct: 362 RILKEPDQSLILQYKALLETEGVTLNFTDEAIERIAEIATEVNQETDNIGARRLHTILER 421

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF AS++    + I   YV   + +     D+  FIL
Sbjct: 422 LLEELSFEASEIAPAHIDITPNYVDQKLANIVKNKDLSQFIL 463


>gi|148557271|ref|YP_001264853.1| ATP-dependent protease ATP-binding subunit HslU [Sphingomonas
           wittichii RW1]
 gi|148502461|gb|ABQ70715.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas
           wittichii RW1]
          Length = 433

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/435 (53%), Positives = 316/435 (72%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  N +P+ IV+ LD +I+GQ DAK+AVA+ALRNRWRRQ+LP  LRDE+ PKNIL++GPT
Sbjct: 1   MNDNLTPKAIVAALDAHIVGQADAKKAVAVALRNRWRRQRLPETLRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ A+ + +E RR  V
Sbjct: 61  GCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKERRRAAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           +++A   A  R+LDALVGK A+  TR  FR++  D ++ DKEI+IEV D+          
Sbjct: 121 KDKAEEAAMARLLDALVGKDASEATRMAFRQRFEDHQLDDKEIEIEVEDSGGMPLEIPGM 180

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG  VG++NL ++  K  G GR K+ +M+V+  + +L+ +E+D+ +D D V R ++Q  E
Sbjct: 181 GG-QVGMINLGDMMGKAFGQGRTKRRKMTVRAAWSKLVDEEADKRLDQDEVSRVALQDAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASG
Sbjct: 240 QNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK+L ++DF  IL+DT ++L  QY+ L+ TEG+ + F
Sbjct: 299 AFHVAKPSDLLPELQGRLPIRVELKALTEADFVRILSDTRASLTEQYRALIGTEGVEIGF 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D I A+A +A  +N  + +IGARRL TVME++LE++SF A D +   + IDA YV   
Sbjct: 359 TDDGIAAIAKIAAEVNGQIENIGARRLSTVMEKLLEEVSFDAEDRKGTALTIDAAYVDAQ 418

Query: 423 IGDFPSETDMYHFIL 437
           + +    TD+  ++L
Sbjct: 419 LREVARNTDLSKYVL 433


>gi|289434563|ref|YP_003464435.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170807|emb|CBH27349.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 469

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/466 (42%), Positives = 302/466 (64%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R +A  NAE+R++  L        T                               R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRNQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469


>gi|229549933|ref|ZP_04438658.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|255972716|ref|ZP_05423302.1| heat shock protein HslU [Enterococcus faecalis T1]
 gi|312951576|ref|ZP_07770472.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0102]
 gi|229304946|gb|EEN70942.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|255963734|gb|EET96210.1| heat shock protein HslU [Enterococcus faecalis T1]
 gi|310630542|gb|EFQ13825.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0102]
 gi|315152402|gb|EFT96418.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0031]
          Length = 467

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 292/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R+ 
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRQT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|313633459|gb|EFS00284.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri
           FSL N1-067]
          Length = 469

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/466 (42%), Positives = 302/466 (64%), Gaps = 33/466 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R +A  NAE+R++  L        T                               R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK +++
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ F A ++  ++V +   YV   +       D+  FIL
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469


>gi|183221725|ref|YP_001839721.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911800|ref|YP_001963355.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776476|gb|ABZ94777.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780147|gb|ABZ98445.1| ATPase component of the HslUV protease [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 472

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 210/455 (46%), Positives = 299/455 (65%), Gaps = 24/455 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV  LD +IIGQ  AKRAVA+ALRNR RR++L   LR+E+ PKNI+++GPTGVG
Sbjct: 19  ELTPRQIVERLDEHIIGQTKAKRAVAVALRNRSRRRKLNESLREEIYPKNIIMIGPTGVG 78

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPFIKVE TK+TE+GYVGR+VE ++RDL   A+N+V+   RD V+++
Sbjct: 79  KTEIARRLSKLCGAPFIKVEATKYTEVGYVGRDVESMVRDLAMGALNLVKSEFRDRVKDK 138

Query: 126 ASINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDIE 168
           A   AEE ILDA++                    +   +RE FR+KLR G +S++EI+I+
Sbjct: 139 AEERAEEIILDAILPPIFHKKEEDLNPEEKERFQSYKESREKFREKLRKGILSEQEIEID 198

Query: 169 VADTS----SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +   S      +      G        +  L   +M     K  ++ V      L+  E+
Sbjct: 199 IPKPSAQTGMPMLQVFGAGNMEEMDNQIQNLLGDLMPKKSGK-RKVKVSDAEKILLEAEA 257

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           ++LID D +  ++++ VE  GI+FLDE DKI  R+   G  VSREGVQRDLLP+VEGS+V
Sbjct: 258 EKLIDSDKIQSEAVRRVEEMGIIFLDEIDKIAGREGRQGADVSREGVQRDLLPIVEGSTV 317

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           +TK G I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L++L ++DF  ILT  +S+
Sbjct: 318 NTKLGPIKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELETLTEADFIQILTTPKSS 377

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+ L+ TEG+ +++T+D I  +A +A  +N    +IGARRL T+ME++LED SF A
Sbjct: 378 LTKQYEALLATEGVKIEYTKDGIAEIAKLAFQMNEKNENIGARRLNTIMEKLLEDTSFDA 437

Query: 405 SDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            DL +  K VVI+ +YV   +     + D+  FIL
Sbjct: 438 PDLPDDQKHVVINQDYVSGKLKGIIEDKDLSRFIL 472


>gi|312135859|ref|YP_004003197.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor
           owensensis OL]
 gi|311775910|gb|ADQ05397.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor
           owensensis OL]
          Length = 464

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/465 (46%), Positives = 314/465 (67%), Gaps = 33/465 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV
Sbjct: 1   MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+    + ++E
Sbjct: 61  GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120

Query: 125 QASINAEERILDALVGKTATSNT-------------------------------REVFRK 153
           +A    E+RIL+ L+ +  +                                  RE+ R+
Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQNYQTTDDYIRTQREILRE 180

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KLR GE+ DK +++EV DT        +   +    ++  ++F  +    +KKK +M+++
Sbjct: 181 KLRSGELEDKVVEVEVEDTVKPPFEMIMGTISDEMGISFQDIFGSLF-PKKKKKKKMTIR 239

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L ++E ++LIDMD V R++IQ  E +GI+F+DE DKI  + S  G  VSREGVQR
Sbjct: 240 EAREVLEQEEYNKLIDMDEVIREAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQR 299

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L  L + D
Sbjct: 300 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLTEED 359

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ ILT  ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N    +IGARRL TV+
Sbjct: 360 FKKILTQPKNAIIKQYVELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTVV 419

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF  +++++   +VID +YV   + D   + D+  FI+
Sbjct: 420 EKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 464


>gi|218961141|ref|YP_001740916.1| molecular chaperone and ATPase component of HslUV protease
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729798|emb|CAO80710.1| molecular chaperone and ATPase component of HslUV protease
           [Candidatus Cloacamonas acidaminovorans]
          Length = 454

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 203/454 (44%), Positives = 286/454 (62%), Gaps = 17/454 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M +    +P+ IV ELD+YIIGQ  AKR VAIALRNRWRRQQ+  D++ E+MP NI+L+G
Sbjct: 1   MLINEYLTPKRIVEELDKYIIGQDQAKRCVAIALRNRWRRQQISGDIKGEIMPNNIILIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG+GKT I+RR++RL  APFIKVE +KFTE+GYVGR+VE ++R+L++ A++ VRE+  +
Sbjct: 61  PTGIGKTEIARRISRLTNAPFIKVEASKFTEVGYVGRDVESMVRELMNYAVSQVREAMIE 120

Query: 121 EVREQASINAEERILDALVGKTATS----------------NTREVFRKKLRDGEISDKE 164
           EVR +A  NA E ILD L+ ++                    +RE  RKKL  G + +KE
Sbjct: 121 EVRPEAEKNATEMILDILLPRSKKMKQNANNTDTPEYERYLRSREKMRKKLLSGSLDEKE 180

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDE 223
           I++E    +          G  +   ++SE+ S +    G  +K++ +V   +   + +E
Sbjct: 181 IEVEPETDNLPNFEIFPGPGLELLDFDISEMISNIFQGKGTPRKVKTTVHSAWKLYVENE 240

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            +RLI  D +   +   VE  GI+F+DE DKI   D   GI VSR GVQRDLLP+VEGS 
Sbjct: 241 INRLISKDKLVETAKMAVEENGIIFIDEIDKIANTDKQVGIDVSRSGVQRDLLPIVEGSK 300

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V TKYG I+T HILFIA+GAF+ ++P+DL+PE+QGRFP+RV L SL + DF  ILT+ E+
Sbjct: 301 VPTKYGMIDTSHILFIAAGAFNTAKPSDLIPELQGRFPIRVELNSLTQEDFERILTEPEN 360

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L  QY+ + ++EG+ L F  ++I  +A  A   N  + DIGARRL TVM ++L+D  F 
Sbjct: 361 SLTKQYQAIFRSEGVELKFMPEAIREIARFAALANEKMEDIGARRLHTVMNKLLDDFLFE 420

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                 K+V I  + V  H+       D+  FIL
Sbjct: 421 MPSETLKSVKITKKMVTEHLSPVIESEDLSRFIL 454


>gi|134299827|ref|YP_001113323.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum
           reducens MI-1]
 gi|172044311|sp|A4J5Z5|HSLU_DESRM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|134052527|gb|ABO50498.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum
           reducens MI-1]
          Length = 466

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/464 (43%), Positives = 310/464 (66%), Gaps = 34/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+ V ELD+YI+GQ+ AK+AVA+ALRNR+RR +L  DL DE++PKNIL++GPTGVGK
Sbjct: 4   LTPRQTVRELDKYIVGQEKAKKAVAVALRNRYRRSKLKEDLIDEVVPKNILMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+A
Sbjct: 64  TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKVEEVEERA 123

Query: 127 SINAEERILDALVGKTATSNT--------------------------------REVFRKK 154
              A+ERI++ L                                         RE  R+K
Sbjct: 124 KRLADERIIELLAPYPNRPTQTKNPFEMLFGGVQDTQQEDKSWEQQNSRIKFERETLREK 183

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           +   E+    ++IEV D S+ +       G     +N+ ++   +    + +K +++V++
Sbjct: 184 MSRCELEKDYLEIEVEDQSTPMLEVFSNSGVEEMGVNMQDVLGSIFPRKK-RKRKVTVEE 242

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQR 273
               L + E+ +LIDMD +   +++  E++GI+FLDE DKI  R+   G   VSR GVQR
Sbjct: 243 ARKILTQQEAQKLIDMDELTAQAVKRAEDHGIIFLDEIDKIATREGTTGSADVSRGGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++SD
Sbjct: 303 DILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRSD 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+ +++LI QY EL+ TEG+ ++F+++S+  +AD+A  +N    +IGARRL T++
Sbjct: 363 FEQILTEPQNSLIKQYTELLGTEGLKIEFSKNSLVEIADIAYTVNEQNENIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+SF A +L  +++ ID++YVR  + D  +  D+  +IL
Sbjct: 423 EKLLEDVSFEAPELNGQSLTIDSDYVREKLKDVVTNRDLSRYIL 466


>gi|302389652|ref|YP_003825473.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter
           oceani DSM 16646]
 gi|302200280|gb|ADL07850.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter
           oceani DSM 16646]
          Length = 469

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/468 (44%), Positives = 310/468 (66%), Gaps = 37/468 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ++AK+ VAIALRNR+RRQ+L  +L++E+MPKNIL++GPTGVG
Sbjct: 3   DLTPRKIVEELDKYIVGQEEAKKCVAIALRNRYRRQKLSKELQEEIMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+  + ++V+++
Sbjct: 63  KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKMEKIEQVKDR 122

Query: 126 ASINAEERILDALVGKTATS----------------------------------NTREVF 151
           A   A+ RI + L      +                                    R+  
Sbjct: 123 ARELADLRIAEILQPDPVKTTNFRNPLEALFGNLSKVDFDEKDEEYESRIKIAREKRKAL 182

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            + ++ G++ ++ I+IEV D S  +       G     +N  +LF  ++   R+KK +++
Sbjct: 183 LEDIKSGKLDNEMIEIEVEDNSPPVLEVFSNSGIEEMGINFQDLFGGIL-PKRRKKKKLT 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           +      + ++E+ +LIDMD V  ++I+  E  GI+F+DE DKI  R+   G  VSREGV
Sbjct: 242 IATARKIMTQEEAQKLIDMDEVVTEAIKRAEETGIIFIDEIDKIAGREQSTGPDVSREGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEG +V TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL+K
Sbjct: 302 QRDILPIVEGCTVVTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLSK 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D + IL + +++LI QYK L++TEGI + FTED+ID +   AV +N    +IGARRL T
Sbjct: 362 EDLKRILVEPKNSLIKQYKALLETEGIKIHFTEDAIDEIVSSAVYVNQQNENIGARRLHT 421

Query: 392 VMERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ME++LEDISF+AS++  +   VVID  YV   + D   + D+  +IL
Sbjct: 422 IMEKLLEDISFNASEIRAEVSEVVIDRSYVSEKLRDIVKDKDLSMYIL 469


>gi|225181365|ref|ZP_03734809.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167946|gb|EEG76753.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter
           alkaliphilus AHT 1]
          Length = 468

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/466 (43%), Positives = 309/466 (66%), Gaps = 36/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            ++PR+IV ELD+YI+GQ+DAK+ VA+ALRNR+RR++LP ++RDE+ PKNI+++GPTGVG
Sbjct: 5   EWTPRQIVGELDKYIVGQRDAKKCVAVALRNRYRRKRLPDEIRDEVFPKNIIMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV+  + + V+E+
Sbjct: 65  KTEIARRLAKLVNAPFVKIEATKFTEVGYVGRDVETMVRDLVETAIRIVQTEKMEGVKEK 124

Query: 126 ASINAEERILDALVG----------------------------------KTATSNTREVF 151
           A + AEE +LD L                                    +      ++  
Sbjct: 125 ARVMAEESLLDLLAPAPKRQQQTNNPLSMLFPATDEEDSKDEEDDYNNRRQEHQENKQRL 184

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R+KL  G + D+ +++EV +    +  F   G   +G +N  +L  +     +KK  +M 
Sbjct: 185 REKLAAGLLEDETVELEVDERPPMVEVFSGSGMEDMG-INFQDLMGQF-FPKKKKMRKMP 242

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L ++E+ +LIDMD V  +++   E  GI+FLDE DKI  +D G+G  VSREGV
Sbjct: 243 VSQARKILQQEEAQKLIDMDEVVGEAVTRAEQSGIIFLDEIDKIAGKDYGSGPDVSREGV 302

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS++ TKYG++ TD ILFIA+GAFHV++P+DL+PE+QGRFP+RV L +L++
Sbjct: 303 QRDILPIVEGSTIMTKYGAVKTDFILFIAAGAFHVAKPSDLIPELQGRFPIRVELDNLSE 362

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           +DF+ ILT+  + LI QY  L++TEGI ++F  ++I  +A +A  LN  + +IGARRL T
Sbjct: 363 ADFQQILTEPANALIKQYTALLETEGIQVEFAPEAIAEIAKMARKLNDEMENIGARRLHT 422

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E+VLE++SFSA +L  + + I + YV+  + D     D+  +IL
Sbjct: 423 ILEKVLEELSFSAPELGTQVIPITSRYVQDKLKDIVQNKDLSRYIL 468


>gi|327535211|gb|AEA94045.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           faecalis OG1RF]
          Length = 467

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNLAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|91205631|ref|YP_537986.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii
           RML369-C]
 gi|123388112|sp|Q1RIB7|HSLU_RICBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|91069175|gb|ABE04897.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia bellii
           RML369-C]
          Length = 452

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/438 (50%), Positives = 318/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 15  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 75  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ER+L++LVGKT++S TRE F++K+  GE+ D EI+I VADT+     +F+IPG
Sbjct: 135 NAREKAIERVLESLVGKTSSSKTREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  +  G+ + K  +M V++    ++ +ES++LID + + + +I +V
Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254

Query: 242 ENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI   A        +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI
Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A  +N  + DIGARRL T++E +LEDISF AS++Q + + ID ++V
Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 435 ENQLSKILTNLDLAKFVL 452


>gi|157827342|ref|YP_001496406.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia bellii
           OSU 85-389]
 gi|157802646|gb|ABV79369.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU
           85-389]
          Length = 452

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/438 (50%), Positives = 318/438 (72%), Gaps = 5/438 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++  +LR+E++PKNIL++G TGV
Sbjct: 15  MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N  +   + EV  
Sbjct: 75  GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
            A   A ER+L++LVGKT++S TRE F++K+  GE+ D EI+I VADT+     +F+IPG
Sbjct: 135 NAREKAIERVLESLVGKTSSSETREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G+LNL ++  +  G+ + K  +M V++    ++ +ES++LID + + + +I +V
Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254

Query: 242 ENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           EN GIVF+DE DKI   A        +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI
Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAFH+++P+DLLPE+QGR P+RV L SL K D   IL + E++LI QY  L+ TE + 
Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+FT  +I+ +AD A  +N  + DIGARRL T++E +LEDISF AS++Q + + ID ++V
Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434

Query: 420 RLHIGDFPSETDMYHFIL 437
              +    +  D+  F+L
Sbjct: 435 ENQLSKILTNLDLAKFVL 452


>gi|172057893|ref|YP_001814353.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium
           sibiricum 255-15]
 gi|229486076|sp|B1YIA9|HSLU_EXIS2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|171990414|gb|ACB61336.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium
           sibiricum 255-15]
          Length = 456

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 213/460 (46%), Positives = 313/460 (68%), Gaps = 32/460 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             F+PR+IV +L+ ++IGQ DAKRAVAIALRNR+RRQ L   LRDE+ PKNIL++GPTGV
Sbjct: 2   HEFTPRQIVEKLNEHVIGQADAKRAVAIALRNRYRRQLLDPSLRDEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L  APF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V++ +++ ++E
Sbjct: 62  GKTEIARRLAKLVRAPFVKIEATKFTEVGYVGRDVESMVRDLVEASLRLVKDEKKEALKE 121

Query: 125 QASINAEERILDALVGKTATS---------------------------NTREVFRKKLRD 157
           +A   A ERI+DALVGK A++                             R V R++L  
Sbjct: 122 RAEAVANERIVDALVGKKASTGLGGGNPFEMLFGGTQKPPEQETANDTADRSVIRQQLFQ 181

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+ ID+++ +   D+  F    G   G+ NL ++  +VM   + KK ++SV++  P
Sbjct: 182 GQLEDRMIDVDIEERQMDL--FSGQQGME-GLANLQDMLGQVM-PKKTKKRQLSVKEARP 237

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E++RL+D++ VH ++++  E  GI+F+DE DKI  +   +  GVSREGVQRD+LP
Sbjct: 238 ILTAEEAERLLDLNEVHDEAVRRAEQMGIIFVDEIDKIATK-GQDSAGVSREGVQRDILP 296

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF  I
Sbjct: 297 IVEGSTVVTKYGPVKTDHMLFIAAGAFHMAKPSDLIPELQGRFPIRVELDSLTEDDFVKI 356

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+    L+ QYK L+  E + + FTED+I  +A +A  +N    +IGARRL T+MERVL
Sbjct: 357 LTEPNQALLKQYKALLGAEQVHVTFTEDAIRQIARIAAQVNDETDNIGARRLYTIMERVL 416

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++SF A+++ E  V I  +YV   +G    + D+  FIL
Sbjct: 417 EELSFEAAEMPETDVTITPQYVMDRVGKVADDRDLSQFIL 456


>gi|229545744|ref|ZP_04434469.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|256853203|ref|ZP_05558573.1| heat shock protein HslVU [Enterococcus faecalis T8]
 gi|229309194|gb|EEN75181.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|256711662|gb|EEU26700.1| heat shock protein HslVU [Enterococcus faecalis T8]
 gi|315029305|gb|EFT41237.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4000]
          Length = 467

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKKQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|29376200|ref|NP_815354.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus
           faecalis V583]
 gi|227518831|ref|ZP_03948880.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227553448|ref|ZP_03983497.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|255975768|ref|ZP_05426354.1| heat shock protein HslU [Enterococcus faecalis T2]
 gi|256619141|ref|ZP_05475987.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200]
 gi|256762577|ref|ZP_05503157.1| heat shock protein HslU [Enterococcus faecalis T3]
 gi|256959057|ref|ZP_05563228.1| heat shock protein HslU [Enterococcus faecalis DS5]
 gi|256961850|ref|ZP_05566021.1| heat shock protein HslU [Enterococcus faecalis Merz96]
 gi|256965047|ref|ZP_05569218.1| heat shock protein HslU [Enterococcus faecalis HIP11704]
 gi|257079088|ref|ZP_05573449.1| heat shock protein HslU [Enterococcus faecalis JH1]
 gi|257082473|ref|ZP_05576834.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|257086666|ref|ZP_05581027.1| heat shock protein HslU [Enterococcus faecalis D6]
 gi|293382915|ref|ZP_06628833.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           R712]
 gi|293389596|ref|ZP_06634053.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           S613]
 gi|294781641|ref|ZP_06746977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           PC1.1]
 gi|300861163|ref|ZP_07107250.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270940|ref|ZP_07552223.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4248]
 gi|307273145|ref|ZP_07554391.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0855]
 gi|307274880|ref|ZP_07556043.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2134]
 gi|307277987|ref|ZP_07559071.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0860]
 gi|307289185|ref|ZP_07569141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0109]
 gi|307291918|ref|ZP_07571787.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0411]
 gi|312899493|ref|ZP_07758823.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0470]
 gi|312903386|ref|ZP_07762566.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0635]
 gi|312907615|ref|ZP_07766606.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312910232|ref|ZP_07769079.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 516]
 gi|62286875|sp|Q834K4|HSLU_ENTFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|29343663|gb|AAO81424.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus
           faecalis V583]
 gi|227073744|gb|EEI11707.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227177424|gb|EEI58396.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|255968640|gb|EET99262.1| heat shock protein HslU [Enterococcus faecalis T2]
 gi|256598668|gb|EEU17844.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200]
 gi|256683828|gb|EEU23523.1| heat shock protein HslU [Enterococcus faecalis T3]
 gi|256949553|gb|EEU66185.1| heat shock protein HslU [Enterococcus faecalis DS5]
 gi|256952346|gb|EEU68978.1| heat shock protein HslU [Enterococcus faecalis Merz96]
 gi|256955543|gb|EEU72175.1| heat shock protein HslU [Enterococcus faecalis HIP11704]
 gi|256987118|gb|EEU74420.1| heat shock protein HslU [Enterococcus faecalis JH1]
 gi|256990503|gb|EEU77805.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|256994696|gb|EEU81998.1| heat shock protein HslU [Enterococcus faecalis D6]
 gi|291079580|gb|EFE16944.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           R712]
 gi|291081213|gb|EFE18176.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           S613]
 gi|294451337|gb|EFG19803.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           PC1.1]
 gi|300850202|gb|EFK77952.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496916|gb|EFM66464.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0411]
 gi|306499894|gb|EFM69255.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0109]
 gi|306505384|gb|EFM74570.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0860]
 gi|306508328|gb|EFM77435.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2134]
 gi|306510130|gb|EFM79154.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0855]
 gi|306512438|gb|EFM81087.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4248]
 gi|310626643|gb|EFQ09926.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|310633262|gb|EFQ16545.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0635]
 gi|311289505|gb|EFQ68061.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           DAPTO 516]
 gi|311293363|gb|EFQ71919.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0470]
 gi|315027188|gb|EFT39120.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2137]
 gi|315034049|gb|EFT45981.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0017]
 gi|315037057|gb|EFT48989.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0027]
 gi|315147342|gb|EFT91358.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX4244]
 gi|315164094|gb|EFU08111.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1302]
 gi|315168956|gb|EFU12973.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1341]
 gi|315169810|gb|EFU13827.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1342]
 gi|315575786|gb|EFU87977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0309B]
 gi|315577628|gb|EFU89819.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0630]
 gi|315580438|gb|EFU92629.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0309A]
 gi|329571618|gb|EGG53299.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1467]
          Length = 467

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|257422533|ref|ZP_05599523.1| heat shock protein hslVU [Enterococcus faecalis X98]
 gi|257164357|gb|EEU94317.1| heat shock protein hslVU [Enterococcus faecalis X98]
 gi|315155674|gb|EFT99690.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0043]
          Length = 467

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQVGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|257085105|ref|ZP_05579466.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257416171|ref|ZP_05593165.1| heat shock protein HslU [Enterococcus faecalis AR01/DG]
 gi|257419373|ref|ZP_05596367.1| heat shock protein hslU [Enterococcus faecalis T11]
 gi|256993135|gb|EEU80437.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257157999|gb|EEU87959.1| heat shock protein HslU [Enterococcus faecalis ARO1/DG]
 gi|257161201|gb|EEU91161.1| heat shock protein hslU [Enterococcus faecalis T11]
          Length = 467

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|295113043|emb|CBL31680.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus sp.
           7L76]
 gi|315145125|gb|EFT89141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX2141]
 gi|315160541|gb|EFU04558.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0645]
 gi|323480807|gb|ADX80246.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus
           faecalis 62]
          Length = 467

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERSV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|315150458|gb|EFT94474.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0012]
          Length = 467

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVKEAQDLLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|315172226|gb|EFU16243.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX1346]
          Length = 467

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/467 (40%), Positives = 291/467 (62%), Gaps = 37/467 (7%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL  +++ ++ PKN+L++GPTGV
Sbjct: 4   LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V  
Sbjct: 64  GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123

Query: 125 QASINAEERILDALVGKTATSNT----------------------------------REV 150
           QA   A +R++  LV                                          R  
Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  +
Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   +   VSREG
Sbjct: 241 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQSSGEVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 301 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL 
Sbjct: 361 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 421 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467


>gi|239618025|ref|YP_002941347.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506856|gb|ACR80343.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia
           TBF 19.5.1]
          Length = 464

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 220/460 (47%), Positives = 312/460 (67%), Gaps = 33/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV ELD+YI+GQ +AKRAVA+ALRNR RRQ+LP D+R E++PKNIL++GPTGVG
Sbjct: 10  QLTPKKIVEELDKYIVGQAEAKRAVAVALRNRIRRQKLPEDVRKEIIPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L+ +PFIKVE T+FTE+GYVG+NV+ +IR+LV   +N+V++ +  EV E+
Sbjct: 70  KTEIARRLAELSKSPFIKVEATRFTEVGYVGKNVDSMIRELVAFGVNMVKQEKMKEVEEK 129

Query: 126 ASINAEERILDALVGKTATS----------------------------NTREVFRKKLRD 157
           A    E+RIL+ALV                                    RE +R+KLRD
Sbjct: 130 AKQFVEDRILEALVPGLKHRAGQPKNIFELFQGVPQQRISPEEAENLRRKREEYRQKLRD 189

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ + +I+IE+ +    +       G     +++S +F  ++   RKKK RMSV +   
Sbjct: 190 GELENLQIEIELEEQPKQMIMIP---GMEEMGIDMSGMFGDML-PKRKKKKRMSVAEARK 245

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+  ES++L+DMD V  ++I+ VEN GIVF+DE DK+ AR S  G  VSREGVQRDLLP
Sbjct: 246 VLLPIESEKLLDMDKVIAEAIERVENRGIVFIDEIDKVTARGSH-GPDVSREGVQRDLLP 304

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EG++++TKYG + TD ILFIA+GAFH+++P+DL+PE QGRFP+RV L  L + DF  I
Sbjct: 305 IIEGTTINTKYGPVRTDFILFIAAGAFHLAKPSDLIPEFQGRFPIRVELNPLTEQDFLRI 364

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  QYK L++TEGI L+FTE  +  +A VA +LN  + +IGARRL TV+E+VL
Sbjct: 365 LTEPKNAITKQYKALLETEGITLEFTEAGLKEIARVAHDLNERIENIGARRLYTVVEKVL 424

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+ISF A D+ E  V+I  +YV   I +  ++ D+  FIL
Sbjct: 425 EEISFEAPDVSEPKVIITEDYVNTRIKEILADEDLSAFIL 464


>gi|193212784|ref|YP_001998737.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobaculum
           parvum NCIB 8327]
 gi|193086261|gb|ACF11537.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobaculum parvum
           NCIB 8327]
          Length = 490

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/473 (45%), Positives = 308/473 (65%), Gaps = 42/473 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV +LD+YIIGQ+DAK++VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 19  QLTPSQIVEQLDKYIIGQKDAKKSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL + A+ +VR  + +EVRE+
Sbjct: 79  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLAEQAVAMVRSEKSEEVREK 138

Query: 126 ASINAEERILDALVGKTA--------------------------------TSNTREVFRK 153
           A++  EER+LD L+   +                                   +RE   +
Sbjct: 139 AALLVEERLLDILLPPVSGIEEQESEGDEEGLVVSGDEVTGDERNLEREINRKSREKMLE 198

Query: 154 KLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +LR G + D++I+IE+ +D    +     P G    +  + +     M   + KK R+++
Sbjct: 199 RLRSGRMEDRQIEIEISSDGQGGMMQIFGPLGQMEDLGGIMQDLMSGMPKKK-KKRRLTI 257

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSRE 269
            +    L ++E  +LIDMD V +++++  E  GIVF+DE DKI A      G G  VSRE
Sbjct: 258 AEARKLLEQEEVQKLIDMDVVVKEALRKAEESGIVFIDEIDKIAAPTTGAGGKGPDVSRE 317

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLP+VEGS+VSTK+G + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LKSL
Sbjct: 318 GVQRDLLPIVEGSAVSTKHGIVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELKSL 377

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF LILT   + LI QY+ ++ TE I L+FTED+I  +A  A  +N TV +IGARRL
Sbjct: 378 TEEDFFLILTQPRNALIKQYRAMLLTEEIDLEFTEDAIREIARTAAKVNETVENIGARRL 437

Query: 390 QTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++  +LE++ F   ++      +K VVIDAE VR  +G   ++ D+  +IL
Sbjct: 438 HTILTNLLEELMFGIPEMVKDGSIDKHVVIDAEKVREKLGKIAADRDLSQYIL 490


>gi|153005547|ref|YP_001379872.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029120|gb|ABS26888.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp.
           Fw109-5]
          Length = 465

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/461 (45%), Positives = 314/461 (68%), Gaps = 29/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + SP+EIV+ELDR+++GQ  AKRAVAIALRNRWRRQ++  +L+DE++PKNI+++GPTGVG
Sbjct: 5   DLSPKEIVAELDRHVVGQGKAKRAVAIALRNRWRRQKVGPELKDEILPKNIVMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ ++RDLV+ A+ +V+E   +++RE+
Sbjct: 65  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDAMVRDLVEAAVKLVKEEEVEKLRER 124

Query: 126 ASINAEERILDALV----------------------GKTATSNTREVFRKKLRDGEISDK 163
           A   AEE++LDAL                          +    RE  R +LR G + D 
Sbjct: 125 AREAAEEKVLDALGYGGGLGLGFRSAVSRVRGESEAEPPSQGGGRERARAQLRAGTLDDD 184

Query: 164 EIDIEVADTSS-------DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            +++E+ +           + +        +G L  + + S + G  +K+K ++ V++  
Sbjct: 185 AVEVELVEKPPPLPFMAPGMEDMAQGLQDMMGQLGNNPIVSMLGGGPKKRKRKLKVKEAL 244

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+ RL+DMD V R+++   +N GI+F+DE DKI  RD+G+G  VSR GVQRDLL
Sbjct: 245 DLLTQEEAARLVDMDRVVREALDRAQNAGIIFIDEIDKIAGRDAGHGPDVSRGGVQRDLL 304

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V+TKYG + TDH+LFIA+GAFHVS+ +DL+PE+QGRFP+RV L+ L + D   
Sbjct: 305 PIVEGSNVNTKYGMVKTDHMLFIAAGAFHVSKVSDLIPELQGRFPIRVELEPLGREDLVR 364

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL +  S+L+ QY  L+ TEG+ + F +D+++ +A +A ++N  + +IGARRL TVMER+
Sbjct: 365 ILREPRSSLVRQYTALLATEGVDVQFRDDAVEEIARIAADVNERMENIGARRLHTVMERL 424

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L+ ISF A DL+ + +V+DA YVR  +     + D+  +IL
Sbjct: 425 LDAISFDAPDLRGQRIVVDAAYVRERLAGIAEDEDLARYIL 465


>gi|289578439|ref|YP_003477066.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacter italicus
           Ab9]
 gi|297544715|ref|YP_003677017.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289528152|gb|ADD02504.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           italicus Ab9]
 gi|296842490|gb|ADH61006.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 459

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 209/458 (45%), Positives = 314/458 (68%), Gaps = 27/458 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +   V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKNVTEK 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------REVFRKKLRDGE 159
           A   AE+R++D +VGK                                RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIVGKKKKQPKNPLEMLFNYPSAEKNEETEEDGMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + +  ++IEV DTS+ +       G+    +NL ++F+ ++   +KK  ++ V +    L
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++
Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV+LK L K DF  IL 
Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E+
Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +SF A DL+ + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 422 LSFKAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459


>gi|320535376|ref|ZP_08035490.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis
           F0421]
 gi|320147778|gb|EFW39280.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis
           F0421]
          Length = 471

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 204/464 (43%), Positives = 313/464 (67%), Gaps = 33/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IVSELD+YIIGQ  AKRAVAIALRNR RR +LP ++R+E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKQIVSELDKYIIGQNKAKRAVAIALRNRTRRLKLPEEIREEIAPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L+ APF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   ++ ++E+A
Sbjct: 68  TEIARRLAKLSKAPFLKVEATKYTEVGYVGRDVESMIRDLMMVGYAMVKTEMQESLKEKA 127

Query: 127 SINAEERILDALVGKTATS--------------------------------NTREVFRKK 154
             N E+R+LD L+  +                                   +TRE F + 
Sbjct: 128 EKNVEDRLLDVLLPGSQKPKEKKSAEKPAPIMIPSMVKETTPNESETNTMPDTREKFCQM 187

Query: 155 LRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           LRDG++ +K +++ V    S+    F          + ++ + S +MG  R K+ +++V+
Sbjct: 188 LRDGKLEEKTVEVTVQPQGSAGFEIFAGSSNMEDIEMTMNNITSMIMGGNRAKRKKVTVK 247

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+ +E D+L+D D +  ++ + V+  GI+F+DE DK+ ++       VSREGVQR
Sbjct: 248 EARDILLAEELDKLVDHDKITDEAKRRVQQMGIIFIDEIDKVASKSERGSADVSREGVQR 307

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+V+TK+G I+T HILFIA+GAF++S+P+DL+PE QGRFP+RV L+SL++ D
Sbjct: 308 DILPIVEGSNVNTKFGVIDTRHILFIAAGAFNISKPSDLIPEFQGRFPLRVELESLHQED 367

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F+ IL + ++ L  QY EL+KTE + ++FT+++ID ++ +A ++N+ + +IGARRL T+M
Sbjct: 368 FKRILLEPKNALTKQYSELLKTENVTIEFTDEAIDRMSFLAADVNARMENIGARRLNTIM 427

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E +LEDISF+ASD+  +TV ID  YV   + D   + D+  +IL
Sbjct: 428 EMLLEDISFNASDMSGQTVTIDVAYVDERLKDIVQDQDLSRYIL 471


>gi|313895584|ref|ZP_07829140.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975710|gb|EFR41169.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 464

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 221/456 (48%), Positives = 308/456 (67%), Gaps = 27/456 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL  D+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR  + +EV+E+A+
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129

Query: 128 INAEERILDALVGKTATSNT-------------------------REVFRKKLRDGEISD 162
            NAEER++D  V     S                           R+  RK+L  GE+ D
Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEKPAEEKQEPPKYQAGRDWVRKRLHAGELED 189

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + I+I+V ++S  ++             NL  +    +   R+++ ++SV++       +
Sbjct: 190 EMIEIDVEESSRPMAGMFAGSSLEGVGDNLQSMIGS-LVPKRRRRRKVSVRQARKLFTAE 248

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEG 281
           E+D+L+DMD V  +++   E  GIVFLDE DKI       +G  VSREGVQRD+LP+VEG
Sbjct: 249 EADKLVDMDVVADEAVYAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVEG 308

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF  ILT+ 
Sbjct: 309 STVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTEP 368

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ LI QY  L+  EG+ L F +D+I  LA++A  +N    DIGARRL T++E++LE++S
Sbjct: 369 KNALIKQYAALLGAEGVTLTFGDDAIGRLAELAETVNEQTEDIGARRLYTLLEKLLENLS 428

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F A DL EK +VID  YV  ++ D   + DM  FIL
Sbjct: 429 FDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464


>gi|116492725|ref|YP_804460.1| ATP-dependent protease ATP-binding subunit HslU [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102875|gb|ABJ68018.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pediococcus
           pentosaceus ATCC 25745]
          Length = 470

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 193/475 (40%), Positives = 288/475 (60%), Gaps = 45/475 (9%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           + +N +P+EIV ELD+++IGQ+ AKRAVA+ALRNR+RR QL  D+++++ PKN+L++GPT
Sbjct: 1   MQYNLTPQEIVQELDQFVIGQKSAKRAVAVALRNRYRRLQLSGDMQEDITPKNLLMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A++I  E+   +V
Sbjct: 61  GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHIEEENSFKDV 120

Query: 123 REQASINAEERILDALVGKTAT-------------------------------------- 144
           R +AS NA+ RI++ LV  +                                        
Sbjct: 121 RAEASKNADRRIVELLVPVSTDTQNKNNAADIQNMMNMLNQLQQGRTPDNLNQSSQKVPD 180

Query: 145 --SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
                R     KL  G + +  + IE+ D   +    +     +   ++L E  + +M  
Sbjct: 181 DIKEKRMNVASKLAKGLLENDMVTIEMDDPKQN----NSGNMMNQMGIDLGESLNGLMPK 236

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +     ++V++    L+R+ESD+L++   ++  +IQ  EN GI+F+DE DKI      +
Sbjct: 237 KKI-TRTVAVREAREILIREESDKLVNHGDLYHAAIQRAENTGIIFIDEIDKITGSGQNS 295

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
              VSR+GVQRD+LP+VEGS VSTKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP+
Sbjct: 296 SSDVSRQGVQRDILPIVEGSQVSTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFPI 355

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L  L K DF  ILT+ ++ L+ QY  L+ T+ + + FT ++I+ +A +A  +N    
Sbjct: 356 RVELNDLTKEDFVKILTEPKNALVKQYIALIGTDNVKITFTIEAIERIAAIAEQVNHETE 415

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++E +LEDI F    ++   V I  +YV   IG      D+  FIL
Sbjct: 416 NIGARRLHTILEHLLEDILFEGPSMEMGEVTITEKYVDDKIGSIAQNKDLSEFIL 470


>gi|304436892|ref|ZP_07396856.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304370091|gb|EFM23752.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 465

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/457 (47%), Positives = 305/457 (66%), Gaps = 28/457 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
            NAEER++D  V     S                            RE  RK+LR GE+ 
Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQEDEPEEKKEEPPKYQAGREWMRKRLRSGELE 189

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +  I++EV +++  + N            NL  +  K++   R K  +++V +       
Sbjct: 190 NDVIEVEVEESARPMGNMFAGSSLEGMSDNLQSMIGKLVPKNRHK-RKVTVAQARKIFAA 248

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVE 280
           +E+D+L+DMD V  ++++  E  GIVFLDE DK+   +  + G  +SREGVQRD+LP+VE
Sbjct: 249 EEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIVE 308

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF  ILT+
Sbjct: 309 GSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILTE 368

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + LI QY  L+  EG+ L F +D++  LA +A  +N    DIGARRL T++E++LE++
Sbjct: 369 PRNALIKQYSALLGVEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEEL 428

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL EK VVIDA YV   + D   + D+  FIL
Sbjct: 429 SFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465


>gi|312898770|ref|ZP_07758159.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera
           micronuciformis F0359]
 gi|310620201|gb|EFQ03772.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera
           micronuciformis F0359]
          Length = 470

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 211/471 (44%), Positives = 294/471 (62%), Gaps = 35/471 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    N +P+EIV++L++YIIGQ  AK++VA+ALRNRWRR++L A+L+ E++PKNILL+G
Sbjct: 1   MTERENLTPKEIVAQLNKYIIGQDGAKKSVAVALRNRWRRKKLSAELQKEIIPKNILLIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA L GAPF+KVE TK+TE+GYVGR+VEQ+IRDL+  AI +V+E    
Sbjct: 61  PTGVGKTEIARRLADLTGAPFVKVEATKYTEVGYVGRDVEQMIRDLLTNAIRMVQERESR 120

Query: 121 EVREQASINAEERILDALVGKTAT----------------------------------SN 146
              E+A   A  RIL     K  T                                  S 
Sbjct: 121 RFEEKAEAEANNRILQVFWPKKETVKEAVTDPVSFLFGNSEGEEEKKESDMPSETTGMSE 180

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
            R    +++  GE  D+EI++EVA+    +              N  E+    +   +KK
Sbjct: 181 RRRQMAERIASGEWDDREIEVEVAEADRAVQGILTGNSTEELTNNFQEMLGN-LVPKKKK 239

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           K +M+V K       +E  +L+DMD +   +I+  E  GIVF+DEFDKI  +   NG  V
Sbjct: 240 KKKMTVAKARELFKEEELGKLLDMDIIIEKAIEATEETGIVFIDEFDKIAEKGRSNGPDV 299

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L
Sbjct: 300 SREGVQRDILPIVEGATVTTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVEL 359

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           +SL   DF+ ILT+   +L+ QY  L+  +   L+FTED ID +A+ A ++N    +IGA
Sbjct: 360 QSLTVEDFKRILTEPSQSLLKQYTALLGADNTELEFTEDGIDMMAEYAHHVNEETENIGA 419

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++ER+LEDISF     + K + ID ++V   +G   ++ DM  +IL
Sbjct: 420 RRLHTILERILEDISFDTPYEEAKKIRIDRDFVSEKLGKVVTDVDMSRYIL 470


>gi|304316913|ref|YP_003852058.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778415|gb|ADL68974.1| heat shock protein HslVU, ATPase subunit HslU
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 460

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/459 (45%), Positives = 305/459 (66%), Gaps = 28/459 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV  LD+YI+GQ  AKR+VA+ALRNR+RR  LP +++DE+ PKNIL++GPTGVG
Sbjct: 3   NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRFRRNLLPDEIKDEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ +   V  +
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122

Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158
           A   AEERI+D L+        +  F                           ++K+R+G
Sbjct: 123 AKELAEERIVDYLLNGRKNKRQKNPFEFLFNAPSNDEVQDDEQQEIKLKKAQLKEKIRNG 182

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E++D  I+IE+ D+++ I       G+    +NL ++FS ++   +KK  ++ + +    
Sbjct: 183 ELNDTVIEIEITDSAAPILEMYSNIGSEEMNINLQDMFSDIL-PKKKKYKKVPIGEAKKI 241

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L  +E+  LIDMD V  ++I+  E  GI+F+DE DKI      NG  VSREGVQRD+LP+
Sbjct: 242 LESEEAQNLIDMDEVIDEAIKRTEQDGIIFIDEIDKIAGSGYTNGPDVSREGVQRDILPI 301

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L K DF  IL
Sbjct: 302 VEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPLTKEDFIRIL 361

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L  QY  L+KTEG+ +++++D+ID +A++A  +N    DIGARRL TVME++ E
Sbjct: 362 KEPKNALTKQYAALLKTEGVDVEYSDDAIDRIAEIAYLINQQSEDIGARRLHTVMEKLFE 421

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +SF A ++  K V+ID  Y+   + D  S+ D+  +IL
Sbjct: 422 KLSFEAPEITGKKVIIDRNYIDEQLKDNLSKFDVNKYIL 460


>gi|294867279|ref|XP_002765040.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|294893396|ref|XP_002774451.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239864920|gb|EEQ97757.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239879844|gb|EER06267.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 488

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 213/439 (48%), Positives = 295/439 (67%), Gaps = 7/439 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE+V  LDRY+IGQ DAKRAVA ALRNRWRRQQL  +LR E+MP+N+L+VGPTGVG
Sbjct: 50  NMKPREMVEYLDRYVIGQADAKRAVANALRNRWRRQQLDEELRAEIMPRNMLMVGPTGVG 109

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+G+ GR+V+ IIRDL+++A+   R    DE+R +
Sbjct: 110 KTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVDSIIRDLLEMAMTRQRSRLEDELRPK 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A+  AEE+IL+AL+G  +  + ++ +   LR   + D+++ +EV  T +D+    + GG+
Sbjct: 170 ATEAAEEQILNALIGPMSAQSDKDTWLAHLRAKLLDDRQVKVEVPVTDNDLYPEWVGGGS 229

Query: 186 SVGILNLSELFS----KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                    +          S + +K  M+V +   +L++   DR+ID D +   +I+  
Sbjct: 230 DSRKPPQIRVIQVPVAGGGTSRQMEKRTMTVAEARQKLVQVHLDRMIDSDMILASAIRST 289

Query: 242 ENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           E  GIVF+DE DKI     G  +G   S EGVQRDLLP++EGS VSTK+G++NTDHILFI
Sbjct: 290 EQEGIVFVDEIDKICNSSKGFYHGSDASSEGVQRDLLPILEGSDVSTKHGNVNTDHILFI 349

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH  +P D+L E+QGR PVRV L +L + DF  ILT+   NLI Q+K L++TEGI 
Sbjct: 350 CSGAFHSVKPGDMLAELQGRLPVRVTLSALTEHDFVRILTEPHHNLIEQHKALLRTEGIT 409

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEY 418
           L+F ED I  +A +A +LN+ V +IGARRL TVME+++E++SF A  +    TV +DA  
Sbjct: 410 LEFPEDGIKEIAHIAFDLNTHVENIGARRLHTVMEKIMEEVSFDAPTMGDGTTVTVDANM 469

Query: 419 VRLHIGDFPSETDMYHFIL 437
           VR  +    S+ D++ FIL
Sbjct: 470 VRTKLKPLLSKGDLHKFIL 488


>gi|78043832|ref|YP_360610.1| ATP-dependent protease ATP-binding subunit HslU [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123729577|sp|Q3AB74|HSLU_CARHZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|77995947|gb|ABB14846.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 461

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/460 (46%), Positives = 309/460 (67%), Gaps = 29/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IV  LD+YIIGQ+ AK+AVA+ALRNR+RR+ LP  L+DE++PKNIL++GPTGVG
Sbjct: 3   NLTPRQIVEYLDKYIIGQEAAKKAVAVALRNRYRRKLLPPHLKDEIIPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VRE +   V ++
Sbjct: 63  KTEIARRLAKLIKAPFVKVEATKFTEVGYVGRDVEGMIRDLVETSLRMVREEKIKMVEDK 122

Query: 126 ASINAEERILDALVGKTATSNTREVF----------------------------RKKLRD 157
           A   A ER+ + ++      N +  F                            + K++ 
Sbjct: 123 AYNLAVERLSEIMIPNPKKENIKNPFEMFFGGIREDAAKTDPAYDELNYRRRELQDKIKK 182

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G + ++ ++IEV +  + +      GG     LN  ++    +   R+KK R++V++   
Sbjct: 183 GFLDNEMVEIEVEEQKTPMVEVFGVGGIEEMGLNFQDILGG-LIPPRRKKRRVTVKEALK 241

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L + E+ +LIDMD V R++I+  E  GIVFLDE DKI +  + +G  VSR GVQRD+LP
Sbjct: 242 ILTQQEAQKLIDMDEVQREAIKRAEEDGIVFLDEIDKIASTGNTHGPDVSRGGVQRDILP 301

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LKSL   DF+ I
Sbjct: 302 IVEGSTVLTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKSLTVEDFKKI 361

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT  E+ L  QY EL+ TEG+ L FTEDS++ +A +A  +N    +IGARRL T++E+VL
Sbjct: 362 LTVPENALTKQYVELLATEGVNLKFTEDSLEEIAKMAYTVNERNENIGARRLITILEKVL 421

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF+A ++  +TVVID ++V+  + +   ++D+  +IL
Sbjct: 422 EDLSFNAPEMWGQTVVIDRKFVQDKLSEIVHDSDLSRYIL 461


>gi|228966774|ref|ZP_04127818.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792873|gb|EEM40431.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 453

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/454 (43%), Positives = 295/454 (64%), Gaps = 32/454 (7%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR+
Sbjct: 2   EKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARRM 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +R
Sbjct: 62  AKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQR 121

Query: 134 ILDALVGKTAT------------------------------SNTREVFRKKLRDGEISDK 163
           +++ LV                                      R+   +KL  G + D+
Sbjct: 122 LVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVERKLAAGLLEDE 181

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + IEV +  S + +     G     +N  +     M   + KK ++SV++    L  +E
Sbjct: 182 IVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSVKEARKLLTNEE 240

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+VEGS+
Sbjct: 241 AQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIVEGSN 299

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL + ++
Sbjct: 300 VATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDN 359

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED+SF 
Sbjct: 360 ALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE 419

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           AS++  + + I  +YV   +       D+  FIL
Sbjct: 420 ASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|116515291|ref|YP_802920.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|122285313|sp|Q056X2|HSLU_BUCCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116257145|gb|ABJ90827.1| ATPase component of ATP-dependent protease [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 444

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 209/444 (47%), Positives = 299/444 (67%), Gaps = 14/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV EL++YIIGQ +AKRAVAIALRNRWRR QL ++LR+E+ PKNIL++GPTGVG
Sbjct: 3   EMTPRKIVKELNKYIIGQNNAKRAVAIALRNRWRRMQLNSELRNEITPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI ++R     + ++ 
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDLAIKMIRLQIIKKNKKH 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERIL  L+     +            T ++FRKKL++G++ +KEI+I++A T  
Sbjct: 123 AKKRAEERILKILIPVPKDNWNEENLKEKPEKTIQIFRKKLQEGKLDNKEIEIQIAATPI 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            I     PG   +    L  LF   +   +K   ++ ++     ++ +E+ +LI+++ + 
Sbjct: 183 GIEIMSPPGMEEL-TNQLQSLFQN-LSGKKKNLRKLKIKDAMKIIIEEEAAKLINLEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +I  VE   IVF+DE DKI     S +   VSREGVQRDLLPL+EG +VSTK+GS+ T
Sbjct: 241 EKAIYSVEQNSIVFIDEIDKICKHHSSASNSDVSREGVQRDLLPLIEGCTVSTKHGSVKT 300

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAF  S P+DL+PE+QGR P+RV L +L   DF  ILT+  +++  QYK L+
Sbjct: 301 DHILFIASGAFQTSTPSDLIPELQGRLPIRVELNALTVDDFERILTEPNASITTQYKALI 360

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTEG+ + FT+  I  +A+ +  +N ++ +IGARRL TV+E+++EDISF++++   + + 
Sbjct: 361 KTEGVDIIFTKKGIRKIAEASWKINESMENIGARRLYTVLEKLMEDISFNSNEKFGQKIY 420

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID +YV LH+       D+  FIL
Sbjct: 421 IDEKYVNLHLDKLIENEDLSRFIL 444


>gi|312143681|ref|YP_003995127.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp.
           'sapolanicus']
 gi|311904332|gb|ADQ14773.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp.
           'sapolanicus']
          Length = 464

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 207/457 (45%), Positives = 317/457 (69%), Gaps = 24/457 (5%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
               +P+EIVSELD+YIIGQ DAK++VAIALRNR+RR+ +  D++DE++PKNIL++GPTG
Sbjct: 9   NNELTPKEIVSELDKYIIGQDDAKKSVAIALRNRYRRKLVRDDMKDEIIPKNILMIGPTG 68

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++A APFIK+EVTKFTE+GYVGR+VE +IRD+ + +I +V+E + ++V 
Sbjct: 69  VGKTEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMIRDITETSIRMVKEHKMEKVE 128

Query: 124 EQASINAEERILDALVGKTATSN-----------------------TREVFRKKLRDGEI 160
            +A   A ERI+D ++                               R+   +++++G++
Sbjct: 129 VEAEKMAIERIVDIMLPGKNKKKDDYFSKMADKDESKDELDDRVKARRQRMFERIKEGKL 188

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D +I+IEV   S  +       G     +N  ++   +  S +KKK  +++++    L 
Sbjct: 189 DDHKIEIEVEANSQQMLEVFSGSGVEEMGINFQDMLGNIFPSKKKKKK-VTIKQAKEILK 247

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           + E+ +LIDM+ V  ++I  VEN GI+FLDE DKI  R+SG+G  VSR+GVQRD+LP+VE
Sbjct: 248 QSEAQKLIDMEQVKSEAIDKVENDGIIFLDEIDKIAGRESGSGPEVSRQGVQRDILPIVE 307

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ IL  
Sbjct: 308 GSTVVTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRENFKDILLL 367

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++LI QYK L++TEG+ ++F+E++++ +++ A ++N    +IGARRL T+ME++LED+
Sbjct: 368 PQNSLIKQYKALLETEGVEIEFSEEAVEEISNFAFDINEETENIGARRLHTIMEKLLEDL 427

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A  L+   ++ID +YV   + D  ++ D+  +IL
Sbjct: 428 SFEAPGLETDKIIIDVDYVHDKLKDVVADKDLSKYIL 464


>gi|228916466|ref|ZP_04080032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228843045|gb|EEM88127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 453

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/454 (43%), Positives = 295/454 (64%), Gaps = 32/454 (7%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR+
Sbjct: 2   EKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARRM 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +R
Sbjct: 62  AKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQR 121

Query: 134 ILDALVGKTAT------------------------------SNTREVFRKKLRDGEISDK 163
           +++ LV                                      R+   +KL  G + D+
Sbjct: 122 LIEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLEDE 181

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + IEV +  S + +     G     +N  +     M   + KK ++SV++    L  +E
Sbjct: 182 IVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSVKEARKVLTNEE 240

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+VEGS+
Sbjct: 241 AQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIVEGSN 299

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL + ++
Sbjct: 300 VATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDN 359

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED+SF 
Sbjct: 360 ALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE 419

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           AS++  + + I  +YV   +       D+  FIL
Sbjct: 420 ASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|254750996|ref|ZP_05203035.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 460

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/455 (43%), Positives = 299/455 (65%), Gaps = 32/455 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 8   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 67

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 68  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 127

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 128 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 187

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +KL  G + D+ + IEV +  S + +     G     +N  +     M   + KK ++SV
Sbjct: 188 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSV 246

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQ
Sbjct: 247 KEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQ 305

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  
Sbjct: 306 RDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTD 365

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+
Sbjct: 366 DFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTI 425

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           ME++LED+SF AS++  + + I  +YV   +    
Sbjct: 426 MEKLLEDLSFEASEITLEKITITPQYVEEKLATIA 460


>gi|228935143|ref|ZP_04097970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947548|ref|ZP_04109838.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228812068|gb|EEM58399.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824508|gb|EEM70313.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 453

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/454 (43%), Positives = 295/454 (64%), Gaps = 32/454 (7%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR+
Sbjct: 2   EKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARRM 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +R
Sbjct: 62  AKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQR 121

Query: 134 ILDALVGKTAT------------------------------SNTREVFRKKLRDGEISDK 163
           +++ LV                                      R+   +KL  G + D+
Sbjct: 122 LVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLEDE 181

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + IEV +  S + +     G     +N  +     M   + KK ++SV++    L  +E
Sbjct: 182 IVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSVKEARKVLTNEE 240

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+VEGS+
Sbjct: 241 AQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIVEGSN 299

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL + ++
Sbjct: 300 VATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDN 359

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED+SF 
Sbjct: 360 ALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE 419

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           AS++  + + I  +YV   +       D+  FIL
Sbjct: 420 ASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|116333448|ref|YP_794975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           ATCC 367]
 gi|116098795|gb|ABJ63944.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           brevis ATCC 367]
          Length = 476

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/469 (40%), Positives = 287/469 (61%), Gaps = 40/469 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P+EIV  LD+Y+IGQ +AK+A+AIALRNR+RR QL   +++E+ PKN+L++GPTGVG
Sbjct: 11  DKTPKEIVGLLDQYVIGQDEAKKAIAIALRNRYRRMQLDPAMQEEISPKNMLMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF KVE +KFTE+GYVGR+VE ++RDLV+V++++ ++ +   VR  
Sbjct: 71  KTEIARRLAKIVHAPFTKVEASKFTEVGYVGRDVESMVRDLVEVSVSMQKQDQFKNVRAD 130

Query: 126 ASINAEERILDALVG-------------------------------------KTATSNTR 148
           A+  A +R++  L                                            N R
Sbjct: 131 ATQAANKRLVKLLAPAKKKENKNNNDFANMMNMFTQMQNGQTPTAPNDQEEVTDEIRNER 190

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               ++L  G + +  ++IE+ D     +N           ++L++    +M   R K  
Sbjct: 191 LSLTEQLNQGLLENHMVEIEMDDPQQ--ANATDNNMLGQMGIDLNDTLGSIMPKKRIK-R 247

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V +    L+ +ES++L++   ++ D+I+  EN GI+FLDE DKI    S N   VSR
Sbjct: 248 TVTVAEAREILVAEESEKLVNNADINHDAIKRAENTGIIFLDEIDKIAKGSSQNSGDVSR 307

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEG+ V TKYG+I+TDHILFIA+GAF  S+P+DL+ E+QGRFP+RV L  
Sbjct: 308 EGVQRDILPIVEGTQVKTKYGTIDTDHILFIAAGAFAESKPSDLIAELQGRFPIRVELND 367

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+K+DF  ILT+  + LI QY  L+ T+ + + FT ++I+ +A++A  LN    +IGARR
Sbjct: 368 LSKADFVRILTEPNNALIKQYIALIGTDNVKVTFTMEAIERIAELAFELNHENQNIGARR 427

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LQTV+E++LED+ +   D+    V I   YV   IGD     D+  +IL
Sbjct: 428 LQTVLEKLLEDLLYEGPDMGTGDVTITESYVNDKIGDIVQNKDLSRYIL 476


>gi|229117315|ref|ZP_04246693.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-3]
 gi|228666215|gb|EEL21679.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus Rock1-3]
          Length = 453

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/454 (43%), Positives = 295/454 (64%), Gaps = 32/454 (7%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPTGVGKT ++RR+
Sbjct: 2   EKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARRM 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +R
Sbjct: 62  AKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQR 121

Query: 134 ILDALVGKTAT------------------------------SNTREVFRKKLRDGEISDK 163
           +++ LV                                      R+   +KL  G + D+
Sbjct: 122 LVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVERKLAAGLLEDE 181

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + IEV +  S + +     G     +N  +     M   + KK ++SV++    L  +E
Sbjct: 182 IVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSVKEARKLLTNEE 240

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+VEGS+
Sbjct: 241 AQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIVEGSN 299

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL + ++
Sbjct: 300 VATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDN 359

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED+SF 
Sbjct: 360 ALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE 419

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           AS++  + + I  +YV   +       D+  FIL
Sbjct: 420 ASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453


>gi|150021490|ref|YP_001306844.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho
           melanesiensis BI429]
 gi|149794011|gb|ABR31459.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho
           melanesiensis BI429]
          Length = 465

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 211/462 (45%), Positives = 319/462 (69%), Gaps = 28/462 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV ELD++I+GQ++AK+AVAIA+RNR RRQ+LP   + E+ PKNIL++G
Sbjct: 7   MKDFDKLTPKEIVHELDKFIVGQREAKKAVAIAIRNRIRRQKLPEQWKKEITPKNILMIG 66

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IR+LV++++N+V++ +  
Sbjct: 67  PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRELVEISVNMVKQRKMK 126

Query: 121 EVREQASINAEERILDALVGKTAT-------------------------SNTREVFRKKL 155
           +V E+A +N EERILDAL+                              S  RE  R+KL
Sbjct: 127 KVEERAKVNVEERILDALLPSRKKTQIPFANIFGMQPEKVQSIEESENLSAKREELRQKL 186

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R GE+ + EI+IE+  +++ I    +P    +G ++LS +   +    R KK +M +   
Sbjct: 187 RKGELDNDEIEIEIETSNTPIGFIGLPEMEDIG-MDLSNVLGNIFPKQR-KKRKMKISDA 244

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L+  E ++LIDMD   ++++++ +N GI+F+DE DKI A+ SG+G  VSR+GVQRDL
Sbjct: 245 KKILLPIEEEKLIDMDETIQEALEIAQNRGIIFIDEMDKIAAKTSGSGQDVSRQGVQRDL 304

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++++TKYG + TD ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF 
Sbjct: 305 LPIVEGTTITTKYGPVRTDFILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTEEDFV 364

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + E+ L  QY+ L+ TEG+ L+F+ + I+ +A V+  LN  + +IGARRL TV+E+
Sbjct: 365 RILVEPENALTKQYQALLYTEGVQLEFSMEGINEIAKVSYRLNQKLENIGARRLYTVIEK 424

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+ F A ++ EK V+ID ++V   + D   + D+  +IL
Sbjct: 425 ILEDVLFEAPEISEK-VIIDDKFVTERLKDIIEDEDLTSYIL 465


>gi|87309985|ref|ZP_01092118.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina
           DSM 3645]
 gi|87287231|gb|EAQ79132.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina
           DSM 3645]
          Length = 448

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 306/446 (68%), Gaps = 18/446 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ LD+ I+GQ DAKRAVA+A+RNRWRR+QLP DL+ E+ PKNI+++GPTGVG
Sbjct: 7   ELTPREIVAALDQNIVGQADAKRAVAVAVRNRWRRKQLPEDLQAEIAPKNIMMMGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+KVE TK+TE+GY GR+VE ++R+LV+ +I +VRE  R  V + 
Sbjct: 67  KTEIARRLAKLTGAPFLKVEATKYTEVGYYGRDVESMVRELVETSIAMVRERERKNVEKD 126

Query: 126 ASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A +  EER+LD LV +                   TRE FR  LR GE+  +++++ +  
Sbjct: 127 AVVRVEERLLDLLVPRPVSYEMASEEEEATDHYERTRERFRGMLRGGELEQRKVELTIEQ 186

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S+ +       G     ++L  +F K++      +  +++ +    L+  ES+ L+D +
Sbjct: 187 KSAPM--MIGGMGLEQMDVDLQGMFEKILPKNST-RRELTIAQARGVLLEQESESLLDKE 243

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +++ +I++ EN GI+FLDE DKIVA D  +G  VSR+GVQRDLLP+VEG++V TK+G +
Sbjct: 244 AINQAAIELAENLGIIFLDELDKIVATDGKSG-DVSRQGVQRDLLPIVEGTTVQTKHGYV 302

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           +TDH+LFIA+GAFH S P++L+PE+QGRFP+RV L  L K DF  ILT+  ++L +QYK 
Sbjct: 303 STDHVLFIAAGAFHKSSPSELMPELQGRFPIRVELNDLTKDDFVRILTEPNASLTMQYKA 362

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+  EG+ +DFTED+I+ LA+ A  +N T  +IGARRL T+MER+LE++SF A D+  K 
Sbjct: 363 LLAAEGLKIDFTEDAIEELAEFAFQVNQTTQNIGARRLYTIMERLLEELSFEAPDMTTKK 422

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V IDAEYVR  +     + D+  FIL
Sbjct: 423 VTIDAEYVRERLTKVTQDEDLSRFIL 448


>gi|302338073|ref|YP_003803279.1| heat shock protein HslVU, ATPase HslU [Spirochaeta smaragdinae DSM
           11293]
 gi|301635258|gb|ADK80685.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           smaragdinae DSM 11293]
          Length = 447

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 209/449 (46%), Positives = 309/449 (68%), Gaps = 14/449 (3%)

Query: 1   MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           MK  F+  +PR+IV+ELD+YI+GQ+ AK+AVAIALRNR RR+ L  +LRDE+ PKNI+++
Sbjct: 1   MKQDFDTMTPRQIVTELDKYIVGQEKAKKAVAIALRNRVRRRMLAENLRDEIAPKNIIMI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RRL+RL+GAPFIKVE TK+TE+GYVGR+VE ++RDL+ V++N+V+    
Sbjct: 61  GPTGVGKTEIARRLSRLSGAPFIKVEATKYTEVGYVGRDVESMVRDLMAVSLNMVKAEMS 120

Query: 120 DEVREQASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIE 168
           + V+E+A   AEE +LD L+                  TRE FR  LR+G++ DK ++++
Sbjct: 121 EGVKEEAENRAEEALLDLLLPGIGGDPSVPEVGGGQGATREKFRTMLREGKLDDKLVEVQ 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V  +       ++  G S   ++++      +  G KK+ R+ V++    L+ +E D+LI
Sbjct: 181 V--SGGSFPTIEVFSGQSPEAMDVNFGNLGSIFGGGKKRKRVRVEQAKKILLDEEMDKLI 238

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D +     + +  E  GI+F+DE DK+  +    G  VSREGVQRD+LP+VEGS+V+TKY
Sbjct: 239 DTERAGDIARERCEQMGIIFIDEIDKVAVKSDQGGADVSREGVQRDILPIVEGSTVNTKY 298

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I+T HILFIA+GAFH S+P+DL+PE+QGRFP+RV L  L+  DF  ILT+ E+ L  Q
Sbjct: 299 GMIDTSHILFIAAGAFHTSKPSDLIPELQGRFPLRVELDDLDADDFVRILTEPENALTRQ 358

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y EL+KTEG+ ++FT+ +I  L+++A  +N+   +IGARRL T+ME +LE++SF+A +L+
Sbjct: 359 YIELLKTEGVDIEFTDPAIRKLSEIAAEVNARTENIGARRLHTIMELLLEEVSFTAPELK 418

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + + I  EYV   +GD   + D+  +IL
Sbjct: 419 GQKIPITPEYVESQLGDIVQDQDLARYIL 447


>gi|315640718|ref|ZP_07895820.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           italicus DSM 15952]
 gi|315483473|gb|EFU73967.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           italicus DSM 15952]
          Length = 466

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/469 (40%), Positives = 294/469 (62%), Gaps = 37/469 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P+EIV ELD+YIIGQ+ AK++VA+ALRNR+RR QL   ++ E+ PKNIL++GPT
Sbjct: 1   MNQEKTPKEIVQELDQYIIGQEKAKKSVAVALRNRYRRLQLDEKMQHEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IVR+ +   V
Sbjct: 61  GVGKTEIARRLAKVVSAPFIKVEATKFTEVGYVGRDVESMVRDLVENAIQIVRKEQYSSV 120

Query: 123 REQASINAEERILDALVGKTATSNT----------------------------------R 148
            +QA   A  R++ ALV                                          R
Sbjct: 121 YQQAVKKANRRLVKALVPGIKKEQKQSTNPYEQMMSILNTANQPVEEPKEELTDEIRSNR 180

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           +   ++L  G + ++E+ I++ +  +  +  +   G     ++L+E     +   +K + 
Sbjct: 181 QAIFEQLERGVLDNREVTIKIDEPKAQAAPMN--NGLEQMGIDLNETLG-ALKPKKKIER 237

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+++ES +L++   +H  ++++ E  GI+F+DE DKI ++   N   VSR
Sbjct: 238 TVTVKEARELLVQEESSKLVNDADIHSAALKLAEASGIIFIDEIDKITSKSQSNSGEVSR 297

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGS V+TKYG++ TDHILF+ASGAFH+S+P+DL+PE+QGRFP+RV L  
Sbjct: 298 EGVQRDILPIVEGSQVNTKYGTLQTDHILFVASGAFHLSKPSDLIPELQGRFPIRVELDD 357

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L   DF  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A  +N    +IGARR
Sbjct: 358 LTAEDFVKILTEPNNALIKQYIALLGTEHVSVIFTQEAIERIAQIAFQVNQETDNIGARR 417

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+ F A+D+Q   + I   YV   + D   + D+  +IL
Sbjct: 418 LHTILEKLLEDLLFEAADMQMAEITITEAYVNEKLNDIAQDEDLSRYIL 466


>gi|167649007|ref|YP_001686670.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter sp.
           K31]
 gi|189043906|sp|B0T7A8|HSLU_CAUSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|167351437|gb|ABZ74172.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter sp. K31]
          Length = 431

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 251/433 (57%), Positives = 339/433 (78%), Gaps = 3/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+G  +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGV
Sbjct: 2   TEFSPREIVSELDRYIVGHTEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+++VR+ RR  V+ 
Sbjct: 62  GKTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALSMVRDKRRGGVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERILDAL G  +T+  RE FRKKLR GE+ DKE+++++ADT      F+IPG 
Sbjct: 122 KAEAAAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADTGGG-GMFEIPGQ 179

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +LNLSE+  K  G GR K  + +V   +  L+ +ESD+L+D + + ++++++ EN+
Sbjct: 180 PGASVLNLSEMM-KSFGGGRTKTHKTTVVGAWAPLIAEESDKLLDQEALTQEALELAENH 238

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +     G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 239 GIVFLDEIDKVASSSQRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NLI Q++ L+ TEG+ L FTE
Sbjct: 299 HVAKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLIRQHQALLLTEGVTLVFTE 358

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++IDA+AD AV +N++V +IGARRLQT++E+V+E+ISF+A+D   +TV +DA+YV+  IG
Sbjct: 359 EAIDAVADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRSGETVTVDADYVQARIG 418

Query: 425 DFPSETDMYHFIL 437
              +  D+  FIL
Sbjct: 419 ALAANADLSRFIL 431


>gi|124516258|gb|EAY57766.1| Heat shock protein HslU [Leptospirillum rubarum]
 gi|206603099|gb|EDZ39579.1| Heat shock protein HslU [Leptospirillum sp. Group II '5-way CG']
          Length = 444

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/433 (47%), Positives = 292/433 (67%), Gaps = 2/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           F ++P +IV  LDRYIIGQ DAK+AVA+A+RNR RR+++   +++E++P+NIL++G TG 
Sbjct: 14  FPWTPGDIVRYLDRYIIGQGDAKKAVAVAIRNRVRRERVSGPMKEEILPRNILMIGATGS 73

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+RL  APF+KVE TK+TE+GYVGRNVE +IRDL +VA N      RD VRE
Sbjct: 74  GKTEIARRLSRLLNAPFLKVEATKYTEVGYVGRNVESMIRDLAEVAYNEGLSRERDLVRE 133

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A  +  ER+LDAL+       TR     +L  G++ D+E++I + +TS          G
Sbjct: 134 DALKDVRERLLDALLPGGGQEATRSRLASRLDAGDLEDREVEILLRETSGGPPTGGSDWG 193

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  + E+   ++   R+ + R++++   P L+ + +D  +D   V R+++  VE  
Sbjct: 194 EG-SPEGMREMLGSILPP-RQIRRRLAIRDARPLLLAEAADARVDAGKVSRETVARVEES 251

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GI+F+DE DK++ R    G  VSREGVQRDLLP+VEGSSV T++G + TD ILFIA+GAF
Sbjct: 252 GILFIDEIDKVIPRSGSVGADVSREGVQRDLLPIVEGSSVRTRHGIVRTDRILFIAAGAF 311

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H +RP+DL+PE QGRFPVRV L +L   +   ILT+TE +L+ QYK L++TEG+ILDF E
Sbjct: 312 HHARPSDLIPEFQGRFPVRVTLTALGSPELYRILTETEGSLVSQYKALLETEGVILDFRE 371

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D +  +A+VA  +N    +IGARRL TVME +LED+SF A ++  +TVVID  +V+  +G
Sbjct: 372 DGLREIAEVAWQVNEGTQNIGARRLFTVMEHLLEDVSFRAPEMAGQTVVIDRPFVQERLG 431

Query: 425 DFPSETDMYHFIL 437
               + D+  +IL
Sbjct: 432 KLVLDPDLTRYIL 444


>gi|313673477|ref|YP_004051588.1| heat shock protein hslvu, atpase subunit hslu [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940233|gb|ADR19425.1| heat shock protein HslVU, ATPase subunit HslU [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 440

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/439 (46%), Positives = 306/439 (69%), Gaps = 10/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV+ELD+YIIGQ  AK+AVAIALRNRWRR QLP + RD++ PKNILL+GPTGVGK
Sbjct: 4   LTPKQIVAELDKYIIGQSLAKKAVAIALRNRWRRLQLPQEKRDDITPKNILLIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++  +PFIKVE +KFTE+G+VGR+VE IIRDLV++AI+  +   R++V ++A
Sbjct: 64  TEIARRLAKITESPFIKVEASKFTEVGFVGRDVESIIRDLVEIAISEEKVRMREQVLDEA 123

Query: 127 SINAEERILDALVG-------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              AE+ +LD L+        + + + ++E FRK L  G++ D+ ++I++ ++   I   
Sbjct: 124 RKKAEDILLDRLLPVPTGYVDQNSIAESKEKFRKMLHQGKLDDRNVEIDIEESHPQIEIL 183

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G      NL ++F  +    + K+  M V+  + +L + E++R++DM+ V R+++ 
Sbjct: 184 T-NAGIDEISSNLQDIFKNIFPGQK-KRRLMKVKDAFIQLEQQEANRMLDMEKVKRNALY 241

Query: 240 MVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            VE+ GIVF+DE DKI +R+    G  VSREGVQRDLLP++EGS++ TKYG + TDHILF
Sbjct: 242 KVEHSGIVFIDEIDKICSREGYTKGGDVSREGVQRDLLPIIEGSTIMTKYGMVKTDHILF 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           I +GAFH+++P+DL+PE+QGRFP+RV L SL K DF  IL + E+ L  QY++L+  + +
Sbjct: 302 IGAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFIKILKEPENALTKQYRDLLMADEV 361

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            ++FT D I+ +A++A  LN T  +IGARRL T++E+VLEDIS+ A       +VID+ +
Sbjct: 362 EIEFTNDGIEKIAEIATELNKTNENIGARRLHTIIEKVLEDISYEAPFGHFAKIVIDSIF 421

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +    ++ D+  +IL
Sbjct: 422 VESKLKTILAKQDLSKYIL 440


>gi|298530975|ref|ZP_07018376.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298508998|gb|EFI32903.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 469

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/472 (45%), Positives = 307/472 (65%), Gaps = 40/472 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           ++   +PREIV ELDRYIIGQQDAK  VAIALRNRWRRQQL  +LR+E+ PKNI+++GPT
Sbjct: 1   MSTTLTPREIVHELDRYIIGQQDAKNMVAIALRNRWRRQQLDPELREEIAPKNIIMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RRLA+LAG+PF KVE +KFTE+GYVGR+VE +IRDL+++ +N+VR   R++V
Sbjct: 61  GVGKTEVARRLAKLAGSPFFKVEASKFTEVGYVGRDVESMIRDLMEIGVNLVRSEEREKV 120

Query: 123 REQASINAEERILDALVGKTA-------------------------------------TS 145
           + +A  NAEER+LD L+                                          +
Sbjct: 121 QAKAEANAEERLLDLLLPPKKAPEGQQGGQGQQQVAFQLESTGQAGDGYSQDQQSQADEN 180

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
            TRE  RK  RDG ++D+ +++EV    S++    +PG      +   ++FS+V    +K
Sbjct: 181 RTREKLRKLWRDGRLNDRTVEVEVQ-AGSNVEIMSMPGM-EDMEMQFRDMFSRVFPKKKK 238

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            K     +  Y  L+++E++RL+DMD V   +   VE  GI+F+DE DK+ A D  +   
Sbjct: 239 TKKVKV-KNAYEILLQEETERLVDMDKVTEIAKDRVEQSGIIFIDEIDKVCASDKSSKAD 297

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRDLLP+VEG  V+TKYG + +DHILFIA+GAFH ++P+DL+PE+QGRFP+RV 
Sbjct: 298 VSREGVQRDLLPVVEGCVVNTKYGMVRSDHILFIAAGAFHYAKPSDLVPELQGRFPLRVE 357

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L   DF  ILT+ ++ L  QY+ L++TEGI L+F   +++ L+  A  +N    +IG
Sbjct: 358 LSALTGEDFYRILTEPQNALTRQYRALLETEGISLEFDNQALEELSSFAQKVNDETENIG 417

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T+ME++L+D+SF A +L  + + +D EYVR  + D   + D+  +IL
Sbjct: 418 ARRLYTIMEKLLQDLSFKAPELAGQKITVDKEYVREQLKDVQEDRDLTRYIL 469


>gi|309389214|gb|ADO77094.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium
           praevalens DSM 2228]
          Length = 463

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 208/460 (45%), Positives = 321/460 (69%), Gaps = 25/460 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +P+EIV+ELD+YIIGQ++AK++VAIALRNR+RR+ + A+++DE++PKNIL++GP
Sbjct: 5   KLDNQLTPKEIVAELDKYIIGQKNAKKSVAIALRNRYRRKLVKAEMKDEIIPKNILMIGP 64

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA++A APFIK+EVTKFTE+GYVGR+VE ++RDL + AI IV+E++R+ 
Sbjct: 65  TGVGKTEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMVRDLTESAIRIVKENKREA 124

Query: 122 VREQASINAEERILDALVGKTATSN------------------------TREVFRKKLRD 157
           V  +A   A ++I+D ++     +N                         R+   K++  
Sbjct: 125 VEIEAEKMAIQKIVDHMLPGKKNNNDDYYSNLVDDVKKNPANLDDRVAARRKRMFKRIES 184

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++  ++I+IEV + +  +       G     +N  ++   +    +K+K ++S+++   
Sbjct: 185 GQLDQQKIEIEVEENNQQMMEVFSGSGVEEMGINFQDMLGNIF-PNKKEKKKVSIKQAKE 243

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E  +LIDM+ V  ++IQ VE  GI+FLDE DKI  ++SG+G  VSR+GVQRD+LP
Sbjct: 244 ILKDEEVQKLIDMEQVKVEAIQKVEEDGIIFLDEMDKIAGKESGSGPEVSRQGVQRDILP 303

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+VSTK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ I
Sbjct: 304 IVEGSTVSTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRQNFKDI 363

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L   +++L+ QYK L++TEGI ++FTE +++ ++  A ++N    +IGARRL T+ME++L
Sbjct: 364 LLLPQNSLVKQYKALLETEGIEIEFTEKAVEEISSFAYDINEETENIGARRLHTIMEKLL 423

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SF A ++ +K V I+ E V+  + D   + D+  +IL
Sbjct: 424 EDLSFEAPEITDKKVEINLECVKDKLQDVVKDKDLSKYIL 463


>gi|21674017|ref|NP_662082.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS]
 gi|32129636|sp|Q8KD63|HSLU_CHLTE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21647165|gb|AAM72424.1| heat shock protein HslU [Chlorobium tepidum TLS]
          Length = 491

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 221/474 (46%), Positives = 313/474 (66%), Gaps = 43/474 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P +IV +LD+YIIGQ+DAKR+VAIALRNR RRQ +  +LRDE+MP NI+++GPTGVG
Sbjct: 19  QLTPTQIVEQLDKYIIGQKDAKRSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ A+ +VR  + +EVRE+
Sbjct: 79  KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVEQAVAMVRSEKTEEVREK 138

Query: 126 ASINAEERILDALVGKTA---------------------------------TSNTREVFR 152
           A++  EER+LD L+   +                                    +R+  R
Sbjct: 139 AALLVEERLLDILLPPVSGLEESEHVGDEEEAVVVEGDAEVVVEKNLEREINRKSRQKMR 198

Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           ++LRDG + D++I++EV +D    +     P G    I N+ +     M   R KK RM+
Sbjct: 199 ERLRDGRMEDRQIELEVSSDGQGGMMQIFGPLGQMEEIGNIMQDLMSGMPKKR-KKRRMT 257

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSR 268
           + +    L ++E  +LIDMD V +++++ VE+ GIVF+DE DKI A      G G  VSR
Sbjct: 258 IAEARKYLEQEEVQKLIDMDAVVKEALRKVEDSGIVFIDEIDKIAAPTTGAGGKGPDVSR 317

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP+VEG++VSTKYG + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LKS
Sbjct: 318 EGVQRDLLPIVEGTAVSTKYGVVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELKS 377

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + DF LILT   + LI QY+ ++KTE I L+FTE++I  +A  A  +N TV +IGARR
Sbjct: 378 LTEEDFFLILTQPRNALIKQYRAMLKTEQIDLEFTEEAIREIARTAAKVNETVENIGARR 437

Query: 389 LQTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++  +LE++ F   ++      ++ +VID   VR  +G   ++ D+  +IL
Sbjct: 438 LHTILTNLLEELMFGIPEMVMDGTIDRNIVIDDNQVREKLGKLVADRDLSQYIL 491


>gi|220917978|ref|YP_002493282.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955832|gb|ACL66216.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 480

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/473 (42%), Positives = 306/473 (64%), Gaps = 42/473 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155
           A   AEE++LDAL                                  + +  RE  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR------ 209
           R G + D  +++E+++ +  +  F  PG   +    L ++   +  +     +       
Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQ-GLQDMVQNLGNNPLLGMLGGGGRKR 247

Query: 210 ---MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--I 264
              ++V++    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G     
Sbjct: 248 KRKVNVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGP 307

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV
Sbjct: 308 DVSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRV 367

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L + D   IL +  ++L+ QY  L+ TEG+ +   ++++D +A +A  +N  + +I
Sbjct: 368 ELEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDEAVDEIARIAAEVNERMENI 427

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 428 GARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480


>gi|88607962|ref|YP_506072.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600131|gb|ABD45599.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           sennetsu str. Miyayama]
          Length = 472

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 220/445 (49%), Positives = 310/445 (69%), Gaps = 17/445 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR  +P  L DE++PKNIL++GPTGVGKT 
Sbjct: 29  PKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNIPKPLHDEIIPKNILMIGPTGVGKTE 88

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+  V++ +R +  ++A  
Sbjct: 89  IARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFSKEAEE 148

Query: 129 NAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEV-ADTSSD 175
           +A+E+ILDALVGK  T +             R VF KKL +G++ D EI+I V     + 
Sbjct: 149 SAKEKILDALVGKKNTEDDDLADGEDEKHDARAVFEKKLDEGKLDDAEIEINVRELPQNV 208

Query: 176 ISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
               D+PG  G  +G++N+ ++ SKV G+ +K K +          L   E + L D D 
Sbjct: 209 FPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDLFDEDA 268

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + ++++ +V N G+VF+DE DKI AR    G  V+REGVQRDLLPL+EG++V TKYG + 
Sbjct: 269 IIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTKYGVVK 327

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+  D   ILT+TES+L+ QY  L
Sbjct: 328 TDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLKQYCAL 387

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D   KT 
Sbjct: 388 LETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDNVGKTF 447

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID EYV  H+     + D+  FIL
Sbjct: 448 SIDREYVDKHLQTIIKKLDLSKFIL 472


>gi|311748240|ref|ZP_07722025.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1]
 gi|126576732|gb|EAZ80980.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1]
          Length = 464

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 208/464 (44%), Positives = 297/464 (64%), Gaps = 27/464 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   + +PR+IV ELD+YIIGQ+DAKR VAIALRNR RR  + +D++ +++P NIL++G
Sbjct: 1   MEQIISLTPRQIVGELDKYIIGQKDAKRNVAIALRNRIRRLMVKSDIQKDIVPNNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VRE + +
Sbjct: 61  STGVGKTEIARRLAKVANAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVALVREEKNE 120

Query: 121 EVREQASINAEERILDALVGKTAT-----------------------SNTREVFRKKLRD 157
            V+ +A+   EE ILD L+    +                         TRE FR+KLR+
Sbjct: 121 AVKAKAAEAVEELILDILIPPVKSAGFTRNAVPADTNSEPNTDEELNERTRERFREKLRN 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ D++++I V  +S         G      +   +     M   + KK ++S+ +   
Sbjct: 181 GELDDRKVEINVKASSPTGIGMIGNGMIDDASMAGLQDMIWGMMPKKTKKRKLSISEARK 240

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDL 275
            LM +E  RLID D V  ++I++ EN GI+F+DE DKI ++    G G  VSREGVQRDL
Sbjct: 241 VLMEEEVSRLIDFDEVKEEAIKLAENNGIIFIDEIDKIASKSGKNGGGPDVSREGVQRDL 300

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEGSSV+TKYG INTDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL + DF 
Sbjct: 301 LPIVEGSSVNTKYGVINTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQSLTQEDFA 360

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
           +IL + ++ L  QY+ L + E + L+F E+SID +A +A  +N  V +IGARRL TVM  
Sbjct: 361 MILREPKNALTKQYQALFEAEEVYLEFNEESIDEIARLAFLINQEVENIGARRLHTVMSH 420

Query: 396 VLEDISFSASD--LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L D  F   D       +++  E V+  +       D+  +IL
Sbjct: 421 LLNDFLFDVPDTIKANSKIMVTKEMVQERLSSLVQNRDLSQYIL 464


>gi|238926944|ref|ZP_04658704.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885178|gb|EEQ48816.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 465

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/457 (47%), Positives = 305/457 (66%), Gaps = 28/457 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT
Sbjct: 10  TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLARL  APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A 
Sbjct: 70  EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129

Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161
            NAEER++D  V     S                            RE  RK+LR GE+ 
Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQADEPEGKKEEPPKYQAGREWMRKRLRSGELE 189

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +  I++EV +++  + N            NL  +  K++   R +K +++V +       
Sbjct: 190 NDVIEVEVEESARPMGNMFAGSSLEGMSDNLQSMIGKLVPKNR-RKRKVTVAQARKIFAA 248

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVE 280
           +E+D+L+DMD V  ++++  E  GIVFLDE DK+   +  + G  +SREGVQRD+LP+VE
Sbjct: 249 EEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIVE 308

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           GS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF  IL +
Sbjct: 309 GSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILIE 368

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + LI QY  L+  EG+ L F +D++  LA +A  +N    DIGARRL T++E++LE++
Sbjct: 369 PRNALIKQYSALLGAEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEEL 428

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF A DL EK VVIDA YV   + D   + D+  FIL
Sbjct: 429 SFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465


>gi|254796566|ref|YP_003081402.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           risticii str. Illinois]
 gi|254589803|gb|ACT69165.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia
           risticii str. Illinois]
          Length = 477

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 221/445 (49%), Positives = 312/445 (70%), Gaps = 17/445 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR  +P  L DE++PKNIL++GPTGVGKT 
Sbjct: 34  PKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNVPKPLHDEIIPKNILMIGPTGVGKTE 93

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+  V++ +R +  ++A  
Sbjct: 94  IARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFSKEAEE 153

Query: 129 NAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +A+E+ILDALVGK  T +             R VF KKL +G++ D EI+I V D   ++
Sbjct: 154 SAKEKILDALVGKKNTEDDDLVDGEDEKHDARAVFEKKLDEGKLDDAEIEINVRDIPQNV 213

Query: 177 -SNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
               D+PG  G  +G++N+ ++ SKV G+ +K K +          L   E + L D D 
Sbjct: 214 FPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDLFDEDA 273

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + ++++ +V N G+VF+DE DKI AR    G  V+REGVQRDLLPL+EG++V TKYG + 
Sbjct: 274 IIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTKYGVVK 332

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+  D   ILT+TES+L+ QY  L
Sbjct: 333 TDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLKQYCAL 392

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D   KT 
Sbjct: 393 LETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDNVGKTF 452

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID EYV  H+     + D+  FIL
Sbjct: 453 SIDREYVDKHLQTIIKKLDLSKFIL 477


>gi|229918622|ref|YP_002887268.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium
           sp. AT1b]
 gi|229470051|gb|ACQ71823.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium sp.
           AT1b]
          Length = 456

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/459 (46%), Positives = 311/459 (67%), Gaps = 27/459 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IVSELDR++IGQ+DAKRAVAIALRNR+RRQ+L ADLRDE+ PKNIL++GPT
Sbjct: 1   MKRELTPRQIVSELDRFVIGQKDAKRAVAIALRNRYRRQKLSADLRDEVTPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E ++++V
Sbjct: 61  GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVEASVRLVKEEKKEDV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE------------------ 164
           +E A   A ER+LDAL GK   + T     + L  G+    E                  
Sbjct: 121 KEPAERAATERLLDALQGKAKATPTASNPFEALFGGQTQQPESTTDTSNNDRVQLRRLLE 180

Query: 165 ------IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
                   IEV        +     G   G+ NL ++  ++    ++K+ +++V++  P 
Sbjct: 181 LGELEDRVIEVELEEKQTMDLFQGQGME-GLSNLQDMLGQI-VPKKRKQRKLTVREARPL 238

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+ +E++ L+D++ VH ++++  E  GI+F+DE DKI  + S +  GVSREGVQRD+LP+
Sbjct: 239 LIAEEAENLLDLNEVHDEAVRRSEQMGIIFVDEIDKIATK-SQDHAGVSREGVQRDILPI 297

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF  IL
Sbjct: 298 VEGSTVVTKYGPVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNSLTEEDFVKIL 357

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+    LI QY  L+++E I + FT ++I+ +A +A ++N    DIGARRL T+MERVLE
Sbjct: 358 TEPSQALIKQYTALLESEEITVRFTHEAIEEIAKIATHVNRETDDIGARRLYTIMERVLE 417

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF A+D+ + TV I   YV+  +G    + D+  +IL
Sbjct: 418 DLSFEAADMPQTTVEITPAYVQAKVGSIADDRDLSQYIL 456


>gi|189500376|ref|YP_001959846.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium
           phaeobacteroides BS1]
 gi|189495817|gb|ACE04365.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium
           phaeobacteroides BS1]
          Length = 490

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/465 (46%), Positives = 308/465 (66%), Gaps = 36/465 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IVS LD+YIIGQQDAK+AVAIALRNR RRQ +  DLRDE+MP NI+L+GPTGVGK
Sbjct: 28  MTPSQIVSRLDKYIIGQQDAKKAVAIALRNRLRRQHVSDDLRDEIMPNNIILIGPTGVGK 87

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL D A+++VR  + +EV+E+A
Sbjct: 88  TEIARRLAKLANAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVSMVRSEKSEEVKEKA 147

Query: 127 SINAEERILDALVGKTATS----------------------------NTREVFRKKLRDG 158
           ++ AEER+LD L+     S                             +RE   ++LR G
Sbjct: 148 ALLAEERLLDILLPPVPGSAYDSDNDDEEITSTEEASDADLEKAVNRKSREKMLERLRSG 207

Query: 159 EISDKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            + D++I++E++  S    +  F   G        + +L S +    ++K  R+++ +  
Sbjct: 208 RMEDRQIEMELSSDSQGGMMQIFGPMGQMEELGGLMQDLMSGL--PKKRKNRRVTIAEAR 265

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR---DSGNGIGVSREGVQR 273
             L ++E  +LIDMD V +++++ VE  GIVF+DE DKI A      G G  VSREGVQR
Sbjct: 266 KLLEQEEVQKLIDMDAVIKEAVKKVEESGIVFIDEIDKIAAPTTGSGGKGPDVSREGVQR 325

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + D
Sbjct: 326 DLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEED 385

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT  ++ LI QYK L+ TEG+ L+F++D+I  +A +A  +N +V +IGARRL T+M
Sbjct: 386 FYKILTQPKNALIKQYKALLMTEGVTLEFSDDAIVEIAAIAAQVNESVENIGARRLHTIM 445

Query: 394 ERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +LE++ FS  +    + + ID   V   +    ++ D+  +IL
Sbjct: 446 TNLLEELMFSIPEQHSNEKIDIDKSMVNDKLSKIITDRDLSQYIL 490


>gi|257869688|ref|ZP_05649341.1| heat shock protein HslVU [Enterococcus gallinarum EG2]
 gi|257803852|gb|EEV32674.1| heat shock protein HslVU [Enterococcus gallinarum EG2]
          Length = 465

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 292/467 (62%), Gaps = 37/467 (7%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N SP+EIV ELD+YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTG
Sbjct: 3   NQNISPKEIVKELDQYIVGQTSAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE +IRDLV+ AI IV++ +   VR
Sbjct: 63  VGKTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMIRDLVENAIQIVKKEQYKNVR 122

Query: 124 EQASINAEERILDALVGKTATSNT---------------------------------REV 150
            QA   A  R++  LV                                         R+ 
Sbjct: 123 LQAEKKANRRLVKVLVPGIKKEQKKSANPYEQMMNMFNPGQQAEEPKEELTDEIRSNRQA 182

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ I+V +  +     +   G     ++L+E     +   +K +  +
Sbjct: 183 IYEQLEKGLLDNREVTIQVDEPKTQSPMMN--NGLEQMGIDLNETLG-ALKPQKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H  ++++ E+ GI+FLDE DKI ++   +G  VSREG
Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSAALRLAESSGIIFLDEIDKITSKSQQSG-EVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 299 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  + LI QY  L+ TE + + FT ++I  +A++A  +N    +IGARRLQ
Sbjct: 359 KEDFVKILTEPNNALIKQYIALLGTENVTVTFTLEAIQKIAEIAFQVNRDTDNIGARRLQ 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F ASD+Q   + I   YV   +     + D+  +IL
Sbjct: 419 TILEKLLEDLLFEASDMQMGEITITEAYVEDKLASIAKDEDLSRYIL 465


>gi|227551197|ref|ZP_03981246.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257896180|ref|ZP_05675833.1| heat shock protein HslU [Enterococcus faecium Com12]
 gi|293377180|ref|ZP_06623388.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           PC4.1]
 gi|227179665|gb|EEI60637.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257832745|gb|EEV59166.1| heat shock protein HslU [Enterococcus faecium Com12]
 gi|292644200|gb|EFF62302.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           PC4.1]
          Length = 466

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/464 (41%), Positives = 289/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G + ++E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|315186393|gb|EFU20153.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           thermophila DSM 6578]
          Length = 448

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/441 (46%), Positives = 304/441 (68%), Gaps = 12/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ  AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 11  DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+   +  V+E+
Sbjct: 71  KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQAGVQEE 130

Query: 126 ASINAEERILDALVGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A    EER+LD L+  + T+         TRE FR+ L+ GE+ D+ +++ V        
Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLKKGELDDRMVEVSVRRPLMPSI 190

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G     ++L  L +     G +K+ R+ V++    L+ +E +RLID D V   +
Sbjct: 191 EVFSGTGFEEIGMSLGGLAN---LFGGEKRKRVKVRQAKELLLAEEMERLIDTDQVAEIA 247

Query: 238 IQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            Q VE  GIVF+DE DKI  ++    G+ VSREGVQRDLLP++EG+ V+T+YG ++T HI
Sbjct: 248 RQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDTSHI 307

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F  ILT  ++ LI QY EL+KTE
Sbjct: 308 LFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELLKTE 367

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT+++++ +A  A  +N+   +IGARRL T+ME VLE++SF+  ++Q + + I A
Sbjct: 368 GVEISFTQEALEEIARTAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKITITA 427

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  +       D+  +IL
Sbjct: 428 DYVKERLAKVLVNEDITRYIL 448


>gi|257898817|ref|ZP_05678470.1| heat shock protein HslU [Enterococcus faecium Com15]
 gi|293570280|ref|ZP_06681349.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E980]
 gi|257836729|gb|EEV61803.1| heat shock protein HslU [Enterococcus faecium Com15]
 gi|291609687|gb|EFF38948.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E980]
          Length = 466

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/464 (41%), Positives = 289/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G + ++E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|226227909|ref|YP_002762015.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas
           aurantiaca T-27]
 gi|226091100|dbj|BAH39545.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas
           aurantiaca T-27]
          Length = 464

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/452 (46%), Positives = 299/452 (66%), Gaps = 22/452 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV+ELDRYI+GQ +AK+AVAIALRNRWRRQ+ P  +R+E+ P NI+L+GPTGVG
Sbjct: 15  ELTPRQIVAELDRYIVGQANAKKAVAIALRNRWRRQRAPESIREEISPNNIILIGPTGVG 74

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE ++RDL++ AI++VR  R  EV + 
Sbjct: 75  KTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMVRDLIENAIDMVRTEREAEVEDL 134

Query: 126 ASINAEERILDALVGKTA-------------------TSNTREVFRKKLRDGEISDKEID 166
           AS   ++RILD L+                          TRE  +  L DG++  +E++
Sbjct: 135 ASEKVDDRILDLLLPMPPVAQGDTPDVRAEYEAAVERHKRTREKLKALLLDGQLESRELE 194

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +EV  +   +     P G   G+ ++++ F  +M   +KK+      +    L+ +E ++
Sbjct: 195 LEVTQSGPRMPGAATP-GVPEGMESVADWFRDMMPKRKKKRTVKV-SEARRILLDEELEK 252

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           LID+D V  D+++  E  GI+FLDE DKI  AR  G+G  VSREGVQRDLLP+VEGS+V 
Sbjct: 253 LIDLDDVTSDALERAEAMGIIFLDEVDKIAGARGQGSGPDVSREGVQRDLLPIVEGSNVQ 312

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TKYG + TDH+LF+A+GAFHV++P+DL+PE+QGRFP+RV L +L ++DF  I+T+ E+ L
Sbjct: 313 TKYGMVKTDHVLFVAAGAFHVAKPSDLIPELQGRFPIRVELDALTEADFVRIMTEPENAL 372

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
             QY  L++ EG  L F ED +  LA VA  +N  + +IGARRL TVM  +LED+ +   
Sbjct: 373 TKQYTALVEAEGATLTFAEDGVAELARVAARVNERMENIGARRLHTVMTTLLEDVLYELP 432

Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D  +  V++DA  VR  +     + D+  +IL
Sbjct: 433 DRGKDPVLVDATMVRDRLRAISEDEDLRKYIL 464


>gi|331701473|ref|YP_004398432.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128816|gb|AEB73369.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           buchneri NRRL B-30929]
          Length = 470

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/467 (40%), Positives = 283/467 (60%), Gaps = 40/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIVS LD+YI+GQ +AK+AVA+ALRNR+RR QL  D++DE+ PKN+L++GPTGVGKT
Sbjct: 7   TPKEIVSVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKDMQDEISPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ AI + R  +  +V  +A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGGDVESMVRDLVENAIQLERADQYKQVHVEAE 126

Query: 128 INAEERILDALVGKTATSN-------------------------------------TREV 150
             A  R++  L       N                                      R  
Sbjct: 127 KQANNRLVKLLAPAKKKENRQNEMQNLMNMFTQMQNGQMPSENQDDQEEVTDDIREKRMS 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             +KL+ G + + +++IE+ D S   +        +   ++L++  + +M   + K   +
Sbjct: 187 IAEKLKAGLLENDQVEIEMDDPSQQPAGQST--MMNQMGIDLNDTLAGLMPKKKIK-RTV 243

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V +    L R  S+ LI+   ++ ++I   EN GI+F+DE DKI    S N   VSREG
Sbjct: 244 PVSEAREILTRQASEELINKADLYHNAIVRAENTGIIFIDEIDKIAPGKSQNSGEVSREG 303

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG++NTDH+LFI SGAF  ++P+DL+PE+QGRFP+RV L  L 
Sbjct: 304 VQRDILPIVEGSQVNTKYGTVNTDHMLFIGSGAFAENKPSDLIPELQGRFPIRVELNDLT 363

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A ++N    +IGARRL 
Sbjct: 364 KEDFVRILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATDVNHNTDNIGARRLH 423

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 424 TILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAQNKDLSRYIL 470


>gi|197123189|ref|YP_002135140.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           sp. K]
 gi|196173038|gb|ACG74011.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp.
           K]
          Length = 480

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/473 (42%), Positives = 303/473 (64%), Gaps = 42/473 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155
           A   AEE++LDAL                                  + +  RE  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-- 213
           R G + D  +++E+++ +  +  F  PG   +    L ++   +  +     +    +  
Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQ-GLQDMVQNLGNNPLLGMLGGGGRKR 247

Query: 214 -------KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--I 264
                  +    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G     
Sbjct: 248 KRKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGP 307

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV
Sbjct: 308 DVSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRV 367

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L + D   IL +  ++L+ QY  L+ TEG+ +   +D++D +A +A  +N  + +I
Sbjct: 368 ELEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENI 427

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 428 GARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480


>gi|323489574|ref|ZP_08094801.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus
           donghaensis MPA1U2]
 gi|323396705|gb|EGA89524.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/466 (43%), Positives = 303/466 (65%), Gaps = 30/466 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK   + +PR+I + LDRYI+GQ+DAKR++AIALRNR+RR +L  ++R E++PKNIL++G
Sbjct: 1   MKNQSDLTPRQITNHLDRYIVGQKDAKRSIAIALRNRYRRSRLDEEMRGEVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ IV+E + +
Sbjct: 61  PTGVGKTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEAAVRIVKEEKYE 120

Query: 121 EVREQASINAEERILDALVGKTATSNT-----------------------------REVF 151
            V+ QA   A ERI+  L        T                             R   
Sbjct: 121 AVKFQAETAANERIVKLLAPSLRKKQTNQNPLEMIFGQKLEQEEEEPTAEVEVRVKRREI 180

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
              L+ G++ ++ + +EV + S  + +     G      N+ + FS +M   +KK+    
Sbjct: 181 AADLKAGKLEEEWVTVEVVENSLSMFDALQGSGMEQMGANMQDAFSSLMPKKKKKRRLRV 240

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
            ++    L  +E+ +LID + V  ++I+  E +GI+F+DE DKI ++ + +   VSREGV
Sbjct: 241 -KEARRVLTTEEAAKLIDDEEVGMEAIERAEQHGIIFIDEMDKIASKSNSSSADVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+VSTKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L  
Sbjct: 300 QRDILPIVEGSTVSTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELQKLEV 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QYK L++TEGI++ F++ SI  LA++A  +N    +IGARRL T
Sbjct: 360 EDFVKILTEPKHSLINQYKALLETEGIVVHFSDASIIRLAEIAYEVNQDTDNIGARRLHT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ER+LED+SF AS++    + I  +YV   + +     D+  FIL
Sbjct: 420 ILERLLEDLSFEASEISPAQIDITVQYVNEKLENVAKNKDLSQFIL 465


>gi|307718594|ref|YP_003874126.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta
           thermophila DSM 6192]
 gi|306532319|gb|ADN01853.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta
           thermophila DSM 6192]
          Length = 448

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 209/441 (47%), Positives = 306/441 (69%), Gaps = 12/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV ELD+YI+GQ  AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG
Sbjct: 11  DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+   ++ VRE+
Sbjct: 71  KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQEGVREE 130

Query: 126 ASINAEERILDALVGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           A    EER+LD L+  + T+         TRE FR+ LR GE+ D+ +++ V        
Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLRKGELDDRMVEVSVRRPLMPSI 190

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G     ++L  L +     G +K+ R+ V++    L+ +E +RLID D V   +
Sbjct: 191 EVFSGTGFEEIGMSLGGLAN---LFGGEKRKRVKVRQAKELLLAEEMERLIDTDQVAEIA 247

Query: 238 IQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            Q VE  GIVF+DE DKI  ++    G+ VSREGVQRDLLP++EG+ V+T+YG ++T HI
Sbjct: 248 RQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDTSHI 307

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F  ILT  ++ LI QY EL+KTE
Sbjct: 308 LFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELLKTE 367

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ + FT+++++ +A +A  +N+   +IGARRL T+ME VLE++SF+  ++Q + + I A
Sbjct: 368 GVEISFTQEALEEIARIAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKITITA 427

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV+  +       D+  +IL
Sbjct: 428 DYVKERLAKVLVNEDITRYIL 448


>gi|197103501|ref|YP_002128878.1| heat shock protein HslU [Phenylobacterium zucineum HLK1]
 gi|238690142|sp|B4RBI9|HSLU_PHEZH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|196476921|gb|ACG76449.1| heat shock protein HslU [Phenylobacterium zucineum HLK1]
          Length = 434

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 257/435 (59%), Positives = 341/435 (78%), Gaps = 4/435 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+G  +AKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGV
Sbjct: 2   TEFSPREIVSELDRFIVGHPEAKRAVAVALRNRWRRRRVPDDLRDEVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ AI +VRE RR  VR 
Sbjct: 62  GKTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESAIQMVREKRRAAVRA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A   AEERILDAL G  +T+  RE FR+KLR GE+ DKE+++++ADTSS     DIPG 
Sbjct: 122 RAEAAAEERILDALTGPGSTA-AREAFRRKLRAGELDDKEVELQLADTSSPFGAMDIPGQ 180

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GAS+G+LNL ++F K    GR K  + +V   +  L+ +ESD+L+D + + ++++++ E
Sbjct: 181 PGASMGVLNLGDMFGKAF-GGRTKTHKTTVSGAWVPLIAEESDKLVDQEALTQEALELAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DK+ +R    G  VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG
Sbjct: 240 NQGIVFLDEIDKVASRQDRAGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+DLLPE+QGR P+RV LK+L++ D R ILT+ E+NLI Q++ L+ TEG+ L F
Sbjct: 300 AFHVAKPSDLLPELQGRLPIRVELKALSRQDMRRILTEPEANLIRQHQALLATEGVTLTF 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED+IDALAD AV +N +V +IGARRLQT++E+VLE++SF+A+D   +T+ +DA YV   
Sbjct: 360 TEDAIDALADAAVAVNGSVENIGARRLQTILEKVLEEVSFTAADRDGETITVDAAYVNGR 419

Query: 423 IGDFPSETDMYHFIL 437
           IGD     D+  FIL
Sbjct: 420 IGDLAGNADLSKFIL 434


>gi|257884851|ref|ZP_05664504.1| heat shock protein HslU [Enterococcus faecium 1,231,501]
 gi|261207610|ref|ZP_05922295.1| heat shock protein HslU [Enterococcus faecium TC 6]
 gi|289565122|ref|ZP_06445575.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           D344SRF]
 gi|294614815|ref|ZP_06694710.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1636]
 gi|294617494|ref|ZP_06697125.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1679]
 gi|257820689|gb|EEV47837.1| heat shock protein HslU [Enterococcus faecium 1,231,501]
 gi|260077993|gb|EEW65699.1| heat shock protein HslU [Enterococcus faecium TC 6]
 gi|289163129|gb|EFD10976.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           D344SRF]
 gi|291592277|gb|EFF23891.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1636]
 gi|291596234|gb|EFF27496.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1679]
          Length = 466

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/464 (41%), Positives = 288/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G +  +E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|257887686|ref|ZP_05667339.1| heat shock protein HslU [Enterococcus faecium 1,141,733]
 gi|257823740|gb|EEV50672.1| heat shock protein HslU [Enterococcus faecium 1,141,733]
          Length = 466

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/464 (41%), Positives = 288/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IV+ELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVNELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+   APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKTVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G + ++E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|86159115|ref|YP_465900.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775626|gb|ABC82463.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 480

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/473 (42%), Positives = 303/473 (64%), Gaps = 42/473 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREIV+ELDRY++GQ  AKRAVAIALRNRWRRQ++  +LRDE++PKNI+++GPTGVG
Sbjct: 9   DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIIMIGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E    ++RE+
Sbjct: 69  KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128

Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155
           A   AEE++LDAL                                  + +  R+  R +L
Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAPAEEPQAAPASHPAGSAAGARDKARAQL 188

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-- 213
           R G + D  +++E+++ S  +  F  PG   +    L ++   +  +     +    +  
Sbjct: 189 RAGTLDDDLVEVELSERSMPVMPFMGPGMEDMAQ-GLQDMVQNLGNNPLLGMLGGGGRKR 247

Query: 214 -------KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--I 264
                  +    L  +E+ R++DM+ V R+++   +N GIVF+DE DKI   D G     
Sbjct: 248 KRKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGP 307

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV
Sbjct: 308 DVSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRV 367

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L + D   IL +  ++L+ QY  L+ TEG+ +   +D++D +A +A  +N  + +I
Sbjct: 368 ELEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENI 427

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TVMER+L+ +SF  S+L+ + +V+DA YVR  +     + D+  +IL
Sbjct: 428 GARRLHTVMERLLDQLSFEGSELRGQRIVVDATYVRDRLQGIAQDEDLSRYIL 480


>gi|69246763|ref|ZP_00604111.1| Heat shock protein HslU [Enterococcus faecium DO]
 gi|257878026|ref|ZP_05657679.1| heat shock protein HslU [Enterococcus faecium 1,230,933]
 gi|257881188|ref|ZP_05660841.1| heat shock protein HslU [Enterococcus faecium 1,231,502]
 gi|257889775|ref|ZP_05669428.1| heat shock protein HslU [Enterococcus faecium 1,231,410]
 gi|257892288|ref|ZP_05671941.1| heat shock protein HslU [Enterococcus faecium 1,231,408]
 gi|258616483|ref|ZP_05714253.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus
           faecium DO]
 gi|260559076|ref|ZP_05831262.1| heat shock protein HslU [Enterococcus faecium C68]
 gi|293563428|ref|ZP_06677877.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1162]
 gi|314938038|ref|ZP_07845348.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a04]
 gi|314941976|ref|ZP_07848837.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133C]
 gi|314948771|ref|ZP_07852143.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0082]
 gi|314951789|ref|ZP_07854828.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133A]
 gi|314991804|ref|ZP_07857262.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133B]
 gi|314995845|ref|ZP_07860932.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a01]
 gi|68195117|gb|EAN09577.1| Heat shock protein HslU [Enterococcus faecium DO]
 gi|257812254|gb|EEV41012.1| heat shock protein HslU [Enterococcus faecium 1,230,933]
 gi|257816846|gb|EEV44174.1| heat shock protein HslU [Enterococcus faecium 1,231,502]
 gi|257826135|gb|EEV52761.1| heat shock protein HslU [Enterococcus faecium 1,231,410]
 gi|257828667|gb|EEV55274.1| heat shock protein HslU [Enterococcus faecium 1,231,408]
 gi|260074833|gb|EEW63149.1| heat shock protein HslU [Enterococcus faecium C68]
 gi|291604689|gb|EFF34174.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1162]
 gi|313589949|gb|EFR68794.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a01]
 gi|313593615|gb|EFR72460.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133B]
 gi|313596068|gb|EFR74913.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133A]
 gi|313599228|gb|EFR78073.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133C]
 gi|313642613|gb|EFS07193.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0133a04]
 gi|313644837|gb|EFS09417.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium
           TX0082]
          Length = 466

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/464 (41%), Positives = 288/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G +  +E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|257876705|ref|ZP_05656358.1| heat shock protein HslVU [Enterococcus casseliflavus EC20]
 gi|257810871|gb|EEV39691.1| heat shock protein HslVU [Enterococcus casseliflavus EC20]
          Length = 465

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 294/467 (62%), Gaps = 37/467 (7%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTG
Sbjct: 3   NQNKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR
Sbjct: 63  VGKTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVR 122

Query: 124 EQASINAEERILDALVGKTATSNT---------------------------------REV 150
            QA   A  R++  LV                                         R+ 
Sbjct: 123 IQAEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQA 182

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ I+V +  +     +   G     ++L+E     +   +K +  +
Sbjct: 183 IFEQLEKGLLDNREVTIQVDEPKNQAPMMN--NGLEQMGIDLNETLG-ALKPQKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREG
Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 299 VQRDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL 
Sbjct: 359 KEDFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 419 TILEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|293568159|ref|ZP_06679495.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1071]
 gi|291589149|gb|EFF20961.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1071]
          Length = 466

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/464 (41%), Positives = 289/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G +  +E+ IEV D        +   G     ++L+E  S  +   +K +  ++V+
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLS-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|325570909|ref|ZP_08146558.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156313|gb|EGC68496.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus
           casseliflavus ATCC 12755]
          Length = 465

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 294/467 (62%), Gaps = 37/467 (7%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTG
Sbjct: 3   NQNKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR
Sbjct: 63  VGKTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVR 122

Query: 124 EQASINAEERILDALVGKTATSNT---------------------------------REV 150
            QA   A  R++  LV                                         R+ 
Sbjct: 123 IQAEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQA 182

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ I+V +  +     +   G     ++L+E     +   +K +  +
Sbjct: 183 IFEQLEKGLLDNREVTIQVDEPKNQAPMMN--NGLEQMGIDLNETLG-ALKPQKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREG
Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 299 VQRDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL 
Sbjct: 359 KEDFVKILTEPNNALVKQYIALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 419 TILEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|293556770|ref|ZP_06675333.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1039]
 gi|291601102|gb|EFF31391.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           E1039]
          Length = 466

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/464 (41%), Positives = 288/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G +  +E+ IEV +        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDSREVTIEVEEQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + LI QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466


>gi|152990746|ref|YP_001356468.1| ATP-dependent protease ATP-binding subunit HslU [Nitratiruptor sp.
           SB155-2]
 gi|151422607|dbj|BAF70111.1| ATP-dependent protease HslVU, ATPase subunit HslU [Nitratiruptor
           sp. SB155-2]
          Length = 443

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 188/444 (42%), Positives = 298/444 (67%), Gaps = 12/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P+EIVS LD YIIGQ++AK+ +AIALRNR+RR QLP +++DE+ PKNIL++G TGV
Sbjct: 1   MDLTPKEIVSYLDEYIIGQKEAKKVIAIALRNRYRRMQLPKEMQDEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+    PF+KVE +K+TE+G+VGR+VE ++RDLV  A+ +V+E  ++   +
Sbjct: 61  GKTEIARRLAKSLDLPFVKVEASKYTEVGFVGRDVESMVRDLVANALVLVKEIHKERHAK 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                  ++IL+ L+                 + E  +++L  GE+ + +I+IE+   S 
Sbjct: 121 DIEEYVTKKILEKLLPPLPKMASEEKKREYQKSYEKMKERLEKGELDNLKIEIELPKHSV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            + + ++P   +    +++++F+  +   + KK  +SV++    L  + S+ L+DM+ + 
Sbjct: 181 SLEDTNLPPELAHAQESIAKIFTLGLNKEKIKK-EVSVKEAKELLKNEASEALLDMEQIK 239

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +++++  +  GI+F+DE DK+    S  G    S+EGVQRDLLP+VEGS+VSTK+G I T
Sbjct: 240 QEALKKAQEEGIIFIDEIDKVAVSSSSQGRQDPSKEGVQRDLLPIVEGSTVSTKWGPIKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P DL+PE+QGRFP+RV L SL++     ILT T+++LI QY+ L+
Sbjct: 300 DHILFIAAGAFHLSKPCDLIPELQGRFPLRVELDSLDEEALYKILTMTKNSLIKQYQALL 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             EG+ L+F +D++ A+A  A + N  + DIGARRL TV+E +LE+ISF A + + +T+ 
Sbjct: 360 AVEGVKLEFNDDALRAIAKYAHSANQKIEDIGARRLHTVIENLLEEISFEADEHKGETIT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID  YV   +G+  +  D+  +IL
Sbjct: 420 IDKAYVDEKLGEVVANEDLAKYIL 443


>gi|301118923|ref|XP_002907189.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora
           infestans T30-4]
 gi|262105701|gb|EEY63753.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora
           infestans T30-4]
          Length = 517

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/435 (49%), Positives = 297/435 (68%), Gaps = 5/435 (1%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
              PRE+V +L++YI+GQ DAKRAVAIALRNRWRRQ++  +LR E+ PKNIL++GPTG G
Sbjct: 85  KLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCG 144

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+ APF+KVE TKFTE+G+ GR+V+QIIRDLV+ AIN+V++ R++ +R+Q
Sbjct: 145 KTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQ 204

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDISNFDIPGG 184
                E RILD L G      +R  F + LR GE+ D+ I+ +V   T+         GG
Sbjct: 205 VQHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVPVSTNPGNQPISFVGG 264

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              GI    E+F +  G  + ++ RM++ +        E +  IDM  V R++IQ  E  
Sbjct: 265 EGKGIS--MEVFGRAFGEKKTERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEEN 322

Query: 245 GIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DKI +          S EGVQRDLLPL+EGS +STK+G++NTDHILF+ SGA
Sbjct: 323 GIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGA 382

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH S+P+DLL E+QGR P+RV LK L + D   ILT+  +NLI Q  EL+KTEG+ L+FT
Sbjct: 383 FHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIKTEGVTLNFT 442

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           +D++  +A VA  +N T+ +IGARRL TV+E+V+EDISF +S+++   TV I AE+V   
Sbjct: 443 DDAVREIARVAAEINQTIENIGARRLHTVVEKVVEDISFDSSEMEAGSTVTITAEFVLER 502

Query: 423 IGDFPSETDMYHFIL 437
           +G    +TD+  FIL
Sbjct: 503 VGKLMKKTDLSKFIL 517


>gi|257867813|ref|ZP_05647466.1| heat shock protein HslVU [Enterococcus casseliflavus EC30]
 gi|257874140|ref|ZP_05653793.1| heat shock protein HslVU [Enterococcus casseliflavus EC10]
 gi|257801896|gb|EEV30799.1| heat shock protein HslVU [Enterococcus casseliflavus EC30]
 gi|257808304|gb|EEV37126.1| heat shock protein HslVU [Enterococcus casseliflavus EC10]
          Length = 465

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/467 (40%), Positives = 294/467 (62%), Gaps = 37/467 (7%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL   ++ ++ PKNIL++GPTG
Sbjct: 3   NQNKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTG 62

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ +   VR
Sbjct: 63  VGKTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVR 122

Query: 124 EQASINAEERILDALVGKTATSNT---------------------------------REV 150
            QA   A  R++  LV                                         R+ 
Sbjct: 123 IQAEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQA 182

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L  G + ++E+ I+V +  +     +   G     ++L+E     +   +K +  +
Sbjct: 183 IFEQLEKGLLDNREVTIQVDEPKNKAPMMN--NGLEQMGIDLNETLG-ALKPQKKIERTV 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V++    L+++ES +L++   +H +++++ E+ GI+FLDE DK+ ++   +G  VSREG
Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREG 298

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L 
Sbjct: 299 VQRDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  ILT+  + L+ QY  L+ TE + + FT ++I+ +A++A  +N    +IGARRL 
Sbjct: 359 KEDFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLH 418

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F AS++Q   + I   YV   +     + D+  +IL
Sbjct: 419 TILEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465


>gi|332297605|ref|YP_004439527.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           brennaborense DSM 12168]
 gi|332180708|gb|AEE16396.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           brennaborense DSM 12168]
          Length = 487

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/475 (41%), Positives = 299/475 (62%), Gaps = 43/475 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++IV++LD YIIGQQ+AK++VAIALRNR RR +LP D+R+E+ PKNIL++GPTGVG
Sbjct: 13  DLTPKQIVAQLDTYIIGQQNAKKSVAIALRNRSRRLKLPEDIREEIAPKNILMIGPTGVG 72

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TK+TE+GYVGR+VE ++RDL+ V  N+V+   ++ ++ Q
Sbjct: 73  KTEIARRLAKLCNAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEAQESLKSQ 132

Query: 126 ASINA---------------EERILDALV----------------------------GKT 142
           A                   E++ + AL                               T
Sbjct: 133 AESRVEEELLDLLLPGSRKEEKKSVQALPLSIFGTSVSESGDVSAASASDGSSSAAASDT 192

Query: 143 ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
             S+TRE FR  LR+G++ D+++++ V   ++  S     GG    +       + +   
Sbjct: 193 LNSSTREKFRAMLREGKLEDRQVEVSVKKQNNVPSMEIFAGGNMEDLEAGMRQITSMFSG 252

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           G+ +K  ++V++    L+ ++ DRLID D +  ++   VE  GI+F+DE DKI  R    
Sbjct: 253 GKTRKKTVTVREARRILIEEQLDRLIDPDKIADEAKNRVEQMGIIFIDEIDKIAVRGEHG 312

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
           G  VSREGVQRD+LP+VEGS+V+TKYG ++T H+LFIA+GAF++S P+DL+PE+QGRFP+
Sbjct: 313 GQDVSREGVQRDILPIVEGSTVNTKYGVVDTTHVLFIAAGAFNLSSPSDLIPELQGRFPL 372

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L SL+  DF+ ILT+ ++ L  QY EL+ TE + + F E +ID ++ +A ++NS   
Sbjct: 373 RVELDSLHAEDFKRILTEPKNALTRQYAELLATENVTVRFDESAIDRMSFLAADVNSRAE 432

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T+ME +LED+SF A +   + + I ++YV   + +     D+  +IL
Sbjct: 433 NIGARRLHTIMETLLEDLSFEADEHAGEVITITSDYVDERLKNIVENQDLSKYIL 487


>gi|42526720|ref|NP_971818.1| ATP-dependent protease ATP-binding subunit HslU [Treponema
           denticola ATCC 35405]
 gi|62286839|sp|Q73NE3|HSLU_TREDE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|41817035|gb|AAS11729.1| heat shock protein HslVU, ATPase subunit HslU [Treponema denticola
           ATCC 35405]
          Length = 485

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/479 (44%), Positives = 315/479 (65%), Gaps = 47/479 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++ V+ELD+YIIGQ  AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG
Sbjct: 7   DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   +++++EQ
Sbjct: 67  KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126

Query: 126 ASINAEERILDALVGKTAT----------------------------------------- 144
           A  N EE +LD L+  +                                           
Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASSGTTISLPSVSSTAQAEEHKAQNE 186

Query: 145 ---SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKV 199
              S TRE FR  LR+ ++ DK +++ ++ +    +     GG+++  +   +S + S +
Sbjct: 187 NDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSML 246

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD 259
           MG  + K+  +SV++    +M ++ DR++D D V  ++ Q VE  GI+F+DE DK+ +R 
Sbjct: 247 MGGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRS 306

Query: 260 S-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318
             G G  VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QG
Sbjct: 307 DRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQG 366

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           RFP+RV L++L+  DF+ IL + ++ L  QY EL++TEG+ ++F +++ID ++ +A ++N
Sbjct: 367 RFPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVN 426

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           S   +IGARRL T+ME +LEDISF+AS++  +TV ID  YV   + D   + D+  +IL
Sbjct: 427 SKNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 485


>gi|320105389|ref|YP_004180979.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus
           saanensis SP1PR4]
 gi|319923910|gb|ADV80985.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus
           saanensis SP1PR4]
          Length = 534

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 226/518 (43%), Positives = 316/518 (61%), Gaps = 87/518 (16%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y++GQQ AKRAVAIALRNR RRQ+LP +L D++MPKNI+++GPTGVG
Sbjct: 18  EMTPREIVAELDKYVVGQQAAKRAVAIALRNRQRRQKLPPELADDIMPKNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE IIRDL ++AI++VRE + +EV ++
Sbjct: 78  KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIIRDLAEIAIDMVREEKMEEVEDK 137

Query: 126 ASINAEERIL--------------------------------DALVGKTATSNTREVFRK 153
           A +NAEER+L                                D    +T  S TRE  R 
Sbjct: 138 AEMNAEERLLDLLLPPSPVTTPTPSNPEEVLAEPVALEAEGTDKAKEETPGSRTREKLRM 197

Query: 154 KLRDGEISDKEIDIEV-ADTSSDISNFDIPGG------ASVGILNLSELFSKVMGSGRKK 206
           + R+G++ ++ ++I+V      +     + GG         G +NL ++   +    R +
Sbjct: 198 QFREGKLDERIVEIDVRDRNQPNFEVVGVQGGDDADATGPNGGMNLKDMLPGLF-GPRSR 256

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           K +M V + +  L+ +E  RLIDMD V R +I  VE+ GIVFLDE DKI  R+ G+G  +
Sbjct: 257 KRKMKVAEAFEYLISEEESRLIDMDQVTRVAIDRVEDSGIVFLDEIDKIAGREGGHGPDI 316

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEG++V+TKYG I+TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L
Sbjct: 317 SREGVQRDILPIVEGTTVNTKYGMISTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVEL 376

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            SL   DF  ILT+ +S+L+ Q   LM TEG+ L+FT +++  +A  A N+N    +IGA
Sbjct: 377 HSLTVEDFVRILTEPKSSLVKQSIALMGTEGLKLEFTPEALSEMASFAFNVNEQTENIGA 436

Query: 387 RRLQTVMERVLEDISFSASDLQ-------------------------------------- 408
           RRL T+MERVL++ISF A D+                                       
Sbjct: 437 RRLHTIMERVLDEISFQAPDILRSSKTNAEGVVGQVEPASIQPSPQMSLLNAEPGKPLPV 496

Query: 409 ---------EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                    EK +V+D EYV+  +       D+  +IL
Sbjct: 497 IERHTEHGIEKVIVVDPEYVKQQVASIVKNQDLSRYIL 534


>gi|16127958|ref|NP_422522.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus
           CB15]
 gi|221236780|ref|YP_002519217.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter
           crescentus NA1000]
 gi|22653796|sp|Q9A238|HSLU_CAUCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|254802301|sp|B8GW06|HSLU_CAUCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|13425498|gb|AAK25690.1| heat shock protein HslU [Caulobacter crescentus CB15]
 gi|220965953|gb|ACL97309.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Caulobacter crescentus NA1000]
          Length = 430

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 253/433 (58%), Positives = 338/433 (78%), Gaps = 4/433 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYI+G  +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGV
Sbjct: 2   TEFSPREIVSELDRYIVGHAEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VRE RR  V+ 
Sbjct: 62  GKTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVREKRRAAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERILDAL G  +T+  RE FRKKLR GE+ DKE+++++ADT     +FDIPG 
Sbjct: 122 KAEGGAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADT--GGPSFDIPGQ 178

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               + NLS++  K +G GR K  + +V   +  L+ +ESD+L+D + + ++++++ EN+
Sbjct: 179 PGAAVFNLSDMM-KSLGGGRTKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENH 237

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DK+ +    +G  VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAF
Sbjct: 238 GIVFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAF 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK L++ D R ILT+ E+NLI Q++ LM TE + L FT+
Sbjct: 298 HVAKPSDLLPELQGRLPIRVELKGLSRDDMRRILTEPEANLIRQHQALMATEEVTLVFTD 357

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++IDALAD AV +N +V +IGARRLQTVME+V+E+ISF+A+D   +TV IDA YV+  +G
Sbjct: 358 EAIDALADAAVAVNGSVENIGARRLQTVMEKVVEEISFTAADRGGETVTIDAAYVQERVG 417

Query: 425 DFPSETDMYHFIL 437
              +  D+  FIL
Sbjct: 418 ALAANADLSRFIL 430


>gi|223040629|ref|ZP_03610899.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus
           RM3267]
 gi|222878087|gb|EEF13198.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus
           RM3267]
          Length = 440

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   ++D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V+  +R++ R+
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKVEQREKNRD 120

Query: 125 QASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     +++I+  L+    T            + E    +L +G++ D  I+IEV   S 
Sbjct: 121 KIDKYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEVVQNS- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               FD        +  + E F K++G S +  K  M V+     L  + SD+++DM+++
Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++  EN GI+F+DE DK+      +G    S+EGVQRDLLP+VEGS+V+TK+G+I 
Sbjct: 236 KTEAVRRAENEGIIFIDEIDKVAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAIK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY+ L
Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L F +++I A+A +A N N  + DIGARRL TV+ERV+EDISF A++   +TV
Sbjct: 356 LKTENVELKFNDEAIRAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGETV 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            ID   V   + D   + D+  +IL
Sbjct: 416 EIDKALVEKRLSDVVKDQDLARYIL 440


>gi|225874219|ref|YP_002755678.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792331|gb|ACO32421.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium
           capsulatum ATCC 51196]
          Length = 523

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 221/507 (43%), Positives = 315/507 (62%), Gaps = 76/507 (14%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV ELD+Y++GQ+ AKRAVAIALRNR RRQ+L  DL DE+MPKNI+++GPTGVG
Sbjct: 18  ELTPREIVGELDKYVVGQKAAKRAVAIALRNRMRRQKLTPDLADEIMPKNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE ++RDLV++AI++VRE + +EV ++
Sbjct: 78  KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESMVRDLVEIAIDMVREEKLEEVEDK 137

Query: 126 ASINAEERILD----------------------------ALVGKTAT------SNTREVF 151
           A +NAEER+LD                             L    A+        TRE  
Sbjct: 138 AELNAEERLLDLLLPPPATQTPAAAPAGAGETPDAHGAIILPPPAASATQESQQRTREKL 197

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R++ R+G++ D+ ++++V +  +         G     +NL ++   +    R KK +M 
Sbjct: 198 RQQFREGKLDDRMVELDVRERGAPSFEIISNQGVEEMDINLKDVLPSIF-GQRTKKRKMK 256

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V + +  L+++E  RLIDMD V R +++ VE  GIVFLDE DKI  R+ G+G  VSREGV
Sbjct: 257 VAEAFEYLVQEEESRLIDMDQVTRAAVERVETSGIVFLDEIDKIAGREGGHGPDVSREGV 316

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEG++V+T+YG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL  
Sbjct: 317 QRDILPIVEGTTVNTRYGMVRTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLTV 376

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ +S+L+ Q   L++TEG+ L+FT ++I  +A  A ++N T  +IGARRL T
Sbjct: 377 EDFIRILTEPKSSLVKQSTALLETEGLKLEFTPEAIAEMAQFAFSVNETTENIGARRLHT 436

Query: 392 VMERVLEDISFSASDL-----------------------------------------QEK 410
           +ME+VL+DISF A DL                                          E 
Sbjct: 437 IMEKVLDDISFLAPDLIKHGKGKSEAGVVDLAAAANGHAEMAPIAPLPVIERETPGGTEL 496

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
             V+D EYV+  +       D+  +IL
Sbjct: 497 VAVVDPEYVKQMVASIVKNQDLSRYIL 523


>gi|294622309|ref|ZP_06701352.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           U0317]
 gi|291598201|gb|EFF29299.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium
           U0317]
          Length = 466

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/464 (41%), Positives = 288/464 (62%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+IVSELD YI+GQ  AK++VA+ALRNR+RR QL   ++ ++ PKN+L++GPTGVGKT
Sbjct: 7   TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +   V   A 
Sbjct: 67  EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126

Query: 128 INAEERILDALVGKTATSNT----------------------------------REVFRK 153
            NAE+R++  LV                                          R    +
Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +L+ G +  +E+ IEV D        +   G     ++L+E     +   +K +  ++V+
Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN--NGLEQMGIDLNETLG-ALTPKKKVERTVTVK 243

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++ES +L+    +H ++I++ E  GI+F+DE DKI ++   +G  VSREGVQR
Sbjct: 244 EALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGVQR 302

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   D
Sbjct: 303 DILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAED 362

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT+  + L+ QY  L+ TE + + FT+++I+ +A +A ++N    +IGARRL T++
Sbjct: 363 FVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHTIL 422

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LED+ F A D+Q   + I   YV   +G   +  D+  +IL
Sbjct: 423 EKLLEDLLFEAPDMQMGEMTITEAYVDDKLGSIAANEDLSRYIL 466


>gi|325473782|gb|EGC76970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema
           denticola F0402]
          Length = 484

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/478 (44%), Positives = 315/478 (65%), Gaps = 46/478 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +P++ V+ELD+YIIGQ  AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG
Sbjct: 7   DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V   +V+   +++++EQ
Sbjct: 67  KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126

Query: 126 ASINAEERILDALVGKTAT----------------------------------------- 144
           A  N EE +LD L+  +                                           
Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAAAAQTQDVSQASSGTTISLPSVSSTAQAEEHKAQNEN 186

Query: 145 --SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKVM 200
             S TRE FR  LR+ ++ DK +++ ++ +    +     GG+++  +   +S + S +M
Sbjct: 187 DMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSMLM 246

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
           G  + K+  +SV++    +M ++ DR++D D V  ++ Q VE  GI+F+DE DK+ +R  
Sbjct: 247 GGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRSD 306

Query: 261 -GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
            G G  VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QGR
Sbjct: 307 RGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQGR 366

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FP+RV L++L+  DF+ IL + ++ L  QY EL++TEG+ ++F +++ID ++ +A ++NS
Sbjct: 367 FPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVNS 426

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL T+ME +LEDISF+AS++  +TV ID  YV   + D   + D+  +IL
Sbjct: 427 KNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 484


>gi|270290227|ref|ZP_06196452.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus
           acidilactici 7_4]
 gi|304384959|ref|ZP_07367305.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus
           acidilactici DSM 20284]
 gi|270281008|gb|EFA26841.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus
           acidilactici 7_4]
 gi|304329153|gb|EFL96373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus
           acidilactici DSM 20284]
          Length = 470

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/470 (40%), Positives = 288/470 (61%), Gaps = 36/470 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L  N +P+EIV++LD ++IGQ+ AKRAVA+ALRNR+RR QL AD+++++ PKN+L++GPT
Sbjct: 2   LKENLTPQEIVNQLDEFVIGQKSAKRAVAVALRNRYRRLQLSADMQEDITPKNLLMIGPT 61

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+++  E    +V
Sbjct: 62  GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHLEEERAFKDV 121

Query: 123 REQASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIE----- 168
           R +A+ NA+ RI++ LV               N   +F +  +    +D +   +     
Sbjct: 122 RMEAAKNADHRIVELLVPVPEDPKQNSAVDFQNMMNMFTQMQQGKTPTDFQPSGQNVPDD 181

Query: 169 ---------------------VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
                                V     D    +     +   ++L+E  S ++   +   
Sbjct: 182 IKEKRMDTASKLAKGLLENEMVTIEMDDPKQNNNNNMMNQMGIDLNESLSGLLPKKKI-S 240

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             + V++    L+++ESD+L++   ++ ++IQ  EN GI+F+DE DKI          VS
Sbjct: 241 RTVPVREAREILIKEESDKLVNHGDLYHNAIQRAENTGIIFIDEIDKITGSGQNTSSDVS 300

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRD+LP+VEGS V+TKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP+RV L 
Sbjct: 301 RQGVQRDILPIVEGSQVNTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFPIRVELN 360

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L+K DF  ILT+ ++ L+ QY  L+ T+ + + FT ++I+ +A++A  +N    +IGAR
Sbjct: 361 DLSKDDFVKILTEPKNALVKQYIALIGTDNVKVTFTIEAIERIAEIAEQVNHETENIGAR 420

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LEDI F    ++   V I  +YV   IG      D+  FIL
Sbjct: 421 RLHTILEKLLEDILFEGPSMEMGEVTITEKYVDSKIGSIAGNKDLSEFIL 470


>gi|255322166|ref|ZP_05363312.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae
           RM3277]
 gi|255300539|gb|EET79810.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae
           RM3277]
          Length = 440

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/445 (43%), Positives = 299/445 (67%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   ++D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V+  +R++ RE
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKAEQREKNRE 120

Query: 125 QASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     +++I+  L+    T            + E    +L +G++ D  I+IE+   S 
Sbjct: 121 KIDEYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEIVQNS- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               FD        +  + E F K++G S +  K  M V+     L  + SD+++DM+++
Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++  EN GI+F+DE DK+      +G    S+EGVQRDLLP+VEGS+V+TK+G+I 
Sbjct: 236 KTEAVRRAENEGIIFIDEIDKVAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAIK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY+ L
Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +KTE + L FT+D+I A+A +A N N  + DIGARRL TV+ERV+EDISF A++   +T+
Sbjct: 356 LKTENVELKFTDDAIKAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGETI 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +D   V   + D   + D+  +IL
Sbjct: 416 EVDKALVGKRLSDVVEDQDLARYIL 440


>gi|332686604|ref|YP_004456378.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus
           plutonius ATCC 35311]
 gi|332370613|dbj|BAK21569.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus
           plutonius ATCC 35311]
          Length = 469

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/472 (40%), Positives = 287/472 (60%), Gaps = 38/472 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    N +P+EIV ELD Y++GQ  AK++VA+ALRNR+RR QL   ++ E+ PKNIL++G
Sbjct: 1   MMNKLNKTPKEIVKELDEYVVGQTAAKKSVAVALRNRYRRLQLEESMQQEITPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA++  APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV + +  
Sbjct: 61  PTGVGKTEIARRLAKIVCAPFVKIEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYS 120

Query: 121 EVREQASINAEERILDALVGKTATSN---------------------------------- 146
            V  QA   A +R+   LV                                         
Sbjct: 121 RVYSQALKKANQRLAKILVPGIKKEKKQSSNNQLEQMMQMFNTSMQQPVEEVEEVTEDIK 180

Query: 147 -TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
            +R+    +L  G +  +E+ I++ +    +   +   G     ++L+E     +   +K
Sbjct: 181 VSRKTVLDQLEKGLLGSREVTIKIDEPKKTMPAMN--NGLEQMGIDLNETLGS-LTPKKK 237

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +  ++V++    L+++E  +L+    +H ++I++ E+ GI+F+DE DKI +++  N   
Sbjct: 238 IERIVTVKEAQELLVKEELAKLVKEADIHSEAIRLAESSGIIFIDEMDKITSKNQQNTGE 297

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRD+LP+VEGS V+TKYG+I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV 
Sbjct: 298 VSREGVQRDILPIVEGSQVNTKYGTIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVE 357

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  L   DF  ILT+  + LI QY  L+ TE + + FT+++I  +A++A  +N    +IG
Sbjct: 358 LDDLTAEDFVRILTEPNNALIKQYMALVGTENVNITFTQEAITRIAEIAFRVNRDTDNIG 417

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T++ER+LED+ F + D+Q   + I   YV   + D     D+  +IL
Sbjct: 418 ARRLHTILERLLEDLLFESPDMQMGDITITEAYVDEKLIDIAQNEDLSRYIL 469


>gi|269925575|ref|YP_003322198.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789235|gb|ACZ41376.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 467

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/466 (44%), Positives = 306/466 (65%), Gaps = 35/466 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +F+PR+IV ELD+YI+GQ  AKRA+A+ALRNR+RRQQLP ++RDE+MPKN++L+GPTGVG
Sbjct: 3   DFTPRQIVKELDKYIVGQDKAKRALAVALRNRYRRQQLPPEIRDEVMPKNLMLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRL++L  APFIKVE TKFTE+GYVG +VE I+R+LV+ ++N+V     D V+E+
Sbjct: 63  KTELARRLSKLVDAPFIKVEATKFTEVGYVGHDVESIVRELVETSVNMVHMKAMDRVKEE 122

Query: 126 ASINAEERILDALVGKT--------------------------------ATSNTREVFRK 153
           A   A ER+++ LV ++                                     R+   +
Sbjct: 123 AEKAANERLINYLVRQSPKYKVLQEELESLADSEQESAAASTKKVVLERKMKRQRKRMAQ 182

Query: 154 KLRDGEISDKEIDIEVADTSS--DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            L +  + D+ ++IEV        + +     G S    + + LFS +  S RK+  ++S
Sbjct: 183 MLAERRLDDEIVEIEVDPDPDLYSVVDIFADIGDSDESEDATPLFS-LDQSNRKRSRKVS 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L+++E+ ++ID D V  + +Q  E  GIVF+DE DK+++    +   VS EGV
Sbjct: 242 VAEARRILVQEEAQKMIDFDAVIDEGVQKAEQDGIVFIDEIDKLISNGYDSNADVSGEGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRDLLP+VEGS+V T+YG++ TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L+ 
Sbjct: 302 QRDLLPIVEGSNVVTRYGTVKTDHILFIAAGAFHDSKPSDLIPELQGRFPLRVELEDLDA 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D + IL + +++LI QY+ L+ TEG+ L+FT D ID +A  A  +N  + +IGARRLQT
Sbjct: 362 EDLKAILVEPDNSLIKQYQALLGTEGVELEFTPDGIDEIARFAHEMNLKMENIGARRLQT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           VMERVLED++F A+DL++K V ID  YV+  + +     D+  FIL
Sbjct: 422 VMERVLEDVAFDATDLEDKHVRIDRAYVKARLENLIENEDLSRFIL 467


>gi|325290380|ref|YP_004266561.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965781|gb|ADY56560.1| ATP-dependent hsl protease ATP-binding subunit hslU
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 460

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/462 (47%), Positives = 312/462 (67%), Gaps = 34/462 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++I+GQ++AKRAVA+ALRNR+RR  LP  ++++++PKNIL++GPTGVG
Sbjct: 3   QLTPREIVSELDKHIVGQREAKRAVAVALRNRYRRSLLPEAMQEDVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+GYVGR+VE IIRDL ++A+ +V+  +  EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEIALRMVKAEKMKEVEVQ 122

Query: 126 ASINAEERILDALVGKTATSN-----------------------------TREVFRKKLR 156
           A  NAE+R++  LV      +                              R++  +KL+
Sbjct: 123 AEKNAEKRLISILVPSKKKESGSLNPFQYLFSQEQEQKEQEQPVTPELEKDRQLIAQKLQ 182

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            GE+   E  I   +     S  D+ GGA + +    +     M   ++KK R++V++  
Sbjct: 183 TGEL---EKHIVEVEVEESSSYADMLGGAGMELGINIQDMMSGMFPKKRKKRRVTVKEAR 239

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L ++E+  LID +   +++I+  E  GIVF+DE DKI  RD G+G  VSR GVQRD+L
Sbjct: 240 RILAQEEAQNLIDHEDAVQEAIRRAEQEGIVFIDEIDKIAGRD-GSGPDVSRGGVQRDIL 298

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           PLVEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF+ 
Sbjct: 299 PLVEGSTVVTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLSVADFKN 358

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+   +LI Q   L++TEGI + F+ED+I+ LA+VA ++NST  +IGARRL T++E+V
Sbjct: 359 ILTEPHFSLIKQSSALLQTEGINVKFSEDAIEELAEVAYDVNSTTENIGARRLHTIVEKV 418

Query: 397 LEDISFSASDL-QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LE++SF AS+L ++ TV I+ +YVR  I D     D+  +IL
Sbjct: 419 LEELSFEASELPEDYTVTINKDYVRKRINDVVQNQDLSKYIL 460


>gi|307109108|gb|EFN57346.1| hypothetical protein CHLNCDRAFT_56057 [Chlorella variabilis]
          Length = 441

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/439 (47%), Positives = 294/439 (66%), Gaps = 9/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR++V  LDRYI+GQ  AK+AVA ALRNRWRR ++P+ LR+E+ PKN+L++GPTG GK
Sbjct: 4   LTPRQVVELLDRYIVGQGAAKKAVANALRNRWRRHKVPSPLREEIHPKNLLMIGPTGCGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI ++R+  R E++ + 
Sbjct: 64  TEIARRLAKMANAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIIMMRQRLRREMKAKI 123

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPGGA 185
               EERIL AL+G  A ++TR  FR   R+GE+ ++          S  +      G  
Sbjct: 124 DEAVEERILTALLGDVA-ADTRNSFRALYREGELDERMWSWSWPSPPSHGMLGPWASGDG 182

Query: 186 SVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           S+  + +  +        GR +K +M V +  P +   E++R I+ ++V R++IQ VE  
Sbjct: 183 SMQEMVVRVDKIWGGGPLGRGEKRKMKVSEARPLIEEQEAERYINAESVTREAIQAVEQD 242

Query: 245 GIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DKIV       G   S EGVQRDLLP++EGS+VSTK+G++NTD+ILFI SGA
Sbjct: 243 GIVFIDEIDKIVTSSEHRYGGDASAEGVQRDLLPIIEGSTVSTKHGNVNTDYILFICSGA 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH  +P+D+L E+QGR P+RV LK L   DF  ILT+ ESN+I Q + L+ TE + L FT
Sbjct: 303 FHSCKPSDMLAELQGRLPIRVELKGLTAEDFYKILTEPESNMIKQQQALLTTENVELIFT 362

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVIDAEY 418
           + SI  +A VA  +N+ V +IGARRL T++ER+LED+SF A +  +++     VVID E 
Sbjct: 363 DASIREIARVAEEVNTNVDNIGARRLHTILERILEDVSFDAPEKAKESGSQVNVVIDKED 422

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   IGD   + D+  ++L
Sbjct: 423 VLTKIGDLLKKQDLSRYVL 441


>gi|90961923|ref|YP_535839.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           salivarius UCC118]
 gi|122448948|sp|Q1WTJ0|HSLU_LACS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|90821117|gb|ABD99756.1| ATP-dependent hsl protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
          Length = 467

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 290/467 (62%), Gaps = 39/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVG
Sbjct: 5   DKTPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRIQLPKDMQEDISPKNLLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR Q
Sbjct: 65  KTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQ 124

Query: 126 ASINAEERILDALVGKTATS-----------------------------------NTREV 150
           A+  A +R++  +V                                         N R  
Sbjct: 125 AAQQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLS 184

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L+ G + + E+ I+V D S+  +N    G      ++LS L    M   +K +  M
Sbjct: 185 VAEQLKRGLLENNEVTIQVDDPSTQFNNQS--GMLGQMGIDLSSL--SSMMPTKKVERTM 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVAEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+
Sbjct: 301 VQRDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL 
Sbjct: 361 VDDFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 421 TILEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467


>gi|330836612|ref|YP_004411253.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           coccoides DSM 17374]
 gi|329748515|gb|AEC01871.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta
           coccoides DSM 17374]
          Length = 468

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/462 (41%), Positives = 285/462 (61%), Gaps = 27/462 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +P  IVSELD+YIIGQ DAK+ +A+A+R+R RR++LP  LRDE+ P+NI+++GPT
Sbjct: 7   MLDDMTPAMIVSELDKYIIGQTDAKKTIAVAIRSRSRRKKLPEALRDEIAPRNIIMIGPT 66

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR++RLA APF+KVE TKFTEIGYVGR+VE ++RDL+ +A+ +V +   D+ 
Sbjct: 67  GVGKTEIARRISRLANAPFVKVEATKFTEIGYVGRDVESMVRDLMGIAVQMVHKELGDQQ 126

Query: 123 REQASINAEERILDALVGKTATSNT--------------------------REVFRKKLR 156
            +      E+R+LD L+                                  RE  R +LR
Sbjct: 127 EDMVRQRVEDRLLDLLIPAAHQEPMTVFRDGKPVPMDSVRIPQSGSSDQSLREQIRAQLR 186

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + +  +D  V+     +    +  G    +         +  +      ++SV++  
Sbjct: 187 AGSLDETVVDFSVSPKKPTVGIDMMGMGNMEDLQQAMNSLGSIFNNRSATHKKLSVKRAR 246

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDL 275
             L  +E ++++D D V   + +  E  GI+F+DE DK+      G+G  VSREGVQRDL
Sbjct: 247 EILTEEELEKIVDQDKVVEIAKERTEQMGIIFIDEIDKVAGNAGKGSGPDVSREGVQRDL 306

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG+ VSTK+G I+T HILFIA+GAFHVS+P+DL+PE+QGRFP+R  L  L   DF 
Sbjct: 307 LPIVEGTKVSTKWGVIDTTHILFIAAGAFHVSKPSDLIPELQGRFPLRTELSDLTADDFY 366

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + E+ +I QY  +++TEG+ + F++D++  ++ +A  +NST  +IGARRL TVME+
Sbjct: 367 RILQEPENAIIKQYCAMLETEGVKVVFSDDALRRISVLAYEVNSTSENIGARRLYTVMEK 426

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF+ASDL  +T+ I   YV   +G      D+  +IL
Sbjct: 427 LLEEVSFTASDLSGQTIPITPAYVDERLGKIIQNPDLSRYIL 468


>gi|323453275|gb|EGB09147.1| hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens]
          Length = 491

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/438 (46%), Positives = 291/438 (66%), Gaps = 7/438 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR IV ELD++I+GQ  AKRAVAIALRNRWRRQ L  +L+ E++PKNIL++GPTG GK
Sbjct: 54  MTPRAIVDELDKHIVGQSAAKRAVAIALRNRWRRQLLGEELKAEIVPKNILMIGPTGCGK 113

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++LA APFIKVE TKFTE+G+ GR+V+QIIRDLV+ +I + R+ + ++ RE+A
Sbjct: 114 TEIARRLSKLAQAPFIKVEATKFTEVGFHGRDVDQIIRDLVEASITLTRKKKAEQFREEA 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
               E RILD L G  A   T+  FR+ LR G + D++ID+++                 
Sbjct: 174 RRLVEGRILDTLTGLNAAQATQSSFREMLRKGVLDDRQIDVDLPAAQPGAQPPGGVIQLD 233

Query: 187 VGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                    F            GR ++ RMS+++  P +   E D+L++   +H++++  
Sbjct: 234 QNNPISINDFLGRFNALAQQGKGRSERKRMSIREARPLIEEQELDKLLEGVDIHKEAVAA 293

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           VE  GIVF+DE DKIV      G   S EGVQRDLLPL+EGS++STKYG+++TD+ILFIA
Sbjct: 294 VEESGIVFIDEIDKIVNASDYRGADASAEGVQRDLLPLIEGSTISTKYGNVDTDYILFIA 353

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SGAFH ++P+DLL E+QGR P+RV L +L ++D   ILT+ E+NLI Q + L+ TE ++L
Sbjct: 354 SGAFHQAKPSDLLAELQGRLPIRVELDALTEADMHRILTEPETNLIAQQRALLATENVML 413

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           +FT+ +I  +A VA   N T+ +IGARRL T +ER+++DISF+A D +    V +D  YV
Sbjct: 414 EFTDCAIREIARVASLANRTIENIGARRLHTCIERIIDDISFNACDYKPGDLVTVDKAYV 473

Query: 420 RLHIGDFPSETDMYHFIL 437
              + D   ++D+  +IL
Sbjct: 474 EGKVDDLLIQSDLSKYIL 491


>gi|227510440|ref|ZP_03940489.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190092|gb|EEI70159.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 481

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/466 (40%), Positives = 283/466 (60%), Gaps = 39/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138

Query: 128 INAEERILDALVGKTATSNTREVFRK---------------------------------- 153
             A  +++  LV      N +   +                                   
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198

Query: 154 --KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             KLR G + ++E++IE+ D S   S  +     +   ++L++  S +M   + K   + 
Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN--SMMNQMGIDLNDTLSGLMPKKKIK-RTVP 255

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VSREGV
Sbjct: 256 VSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSREGV 315

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L  L+K
Sbjct: 316 QRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDLSK 375

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGARRL T
Sbjct: 376 DDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRLHT 435

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 436 ILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481


>gi|302191328|ref|ZP_07267582.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           iners AB-1]
 gi|309805719|ref|ZP_07699759.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|309809302|ref|ZP_07703171.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871368|ref|ZP_07731463.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873946|ref|ZP_07733982.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875447|ref|ZP_07735450.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|325911979|ref|ZP_08174381.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 143-D]
 gi|325912848|ref|ZP_08175226.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 60-B]
 gi|329921323|ref|ZP_08277761.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 1401G]
 gi|308164972|gb|EFO67215.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|308170415|gb|EFO72439.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311088958|gb|EFQ47399.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090495|gb|EFQ48903.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093021|gb|EFQ51370.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476164|gb|EGC79328.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 143-D]
 gi|325477841|gb|EGC80975.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           UPII 60-B]
 gi|328934615|gb|EGG31119.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           SPIN 1401G]
          Length = 464

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/465 (42%), Positives = 292/465 (62%), Gaps = 39/465 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
            +A +R++  LV                                         + R    
Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 183

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            KL+ G + + E+ + V   +      D+ G   +   ++S L   +M   R  +  +SV
Sbjct: 184 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMGM---DMSSLMGGLMPKKRV-RRTLSV 239

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREGVQ
Sbjct: 240 KDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGVQ 299

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L +S
Sbjct: 300 RDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRES 359

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL T+
Sbjct: 360 DFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLATI 419

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 420 LEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 464


>gi|300361602|ref|ZP_07057779.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           gasseri JV-V03]
 gi|300354221|gb|EFJ70092.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/468 (39%), Positives = 285/468 (60%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + D V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KVQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180

Query: 155 -----LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
                L  G + ++E+ IEV          D+ G   + + +L       +   +  K  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMGQMGIDMSSLMGD----LMPKKTVKRT 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|227524591|ref|ZP_03954640.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088266|gb|EEI23578.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
          Length = 481

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/466 (40%), Positives = 283/466 (60%), Gaps = 39/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRNDAE 138

Query: 128 INAEERILDALVGKTATSNTREVFRK---------------------------------- 153
             A  +++  LV      N +   +                                   
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198

Query: 154 --KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             KLR G + ++E++IE+ D S   S  +     +   ++L++  S +M   + K   + 
Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN--SMMNQMGIDLNDTLSGLMPKKKIK-RTVP 255

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VSREGV
Sbjct: 256 VSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSREGV 315

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L  L+K
Sbjct: 316 QRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDLSK 375

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGARRL T
Sbjct: 376 DDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRLHT 435

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 436 ILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481


>gi|116629575|ref|YP_814747.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238853066|ref|ZP_04643458.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           202-4]
 gi|282852046|ref|ZP_06261404.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           224-1]
 gi|311110782|ref|ZP_07712179.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           MV-22]
 gi|122273487|sp|Q043R3|HSLU_LACGA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116095157|gb|ABJ60309.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           gasseri ATCC 33323]
 gi|238834314|gb|EEQ26559.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           202-4]
 gi|282556806|gb|EFB62410.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           224-1]
 gi|311065936|gb|EFQ46276.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri
           MV-22]
          Length = 464

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/468 (39%), Positives = 285/468 (60%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + D V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KLQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180

Query: 155 -----LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
                L  G + ++E+ IEV          D+ G   + + +L       +   +  K  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMGQMGIDMSSLMGD----LMPKKTVKRT 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|259500639|ref|ZP_05743541.1| heat shock protein HslVU [Lactobacillus iners DSM 13335]
 gi|315653526|ref|ZP_07906447.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           iners ATCC 55195]
 gi|259168023|gb|EEW52518.1| heat shock protein HslVU [Lactobacillus iners DSM 13335]
 gi|315489217|gb|EFU78858.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           iners ATCC 55195]
          Length = 471

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 198/475 (41%), Positives = 296/475 (62%), Gaps = 42/475 (8%)

Query: 1   MKLTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           MK   ++   +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL
Sbjct: 1   MKFRRDYMVKTPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNIL 60

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           + GPTGVGKT I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++
Sbjct: 61  MAGPTGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQA 120

Query: 118 RRDEVREQASINAEERILDALVGKTATS-------------------------------- 145
             D V+ +A+ +A +R++  LV                                      
Sbjct: 121 EFDRVKIEATEHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDD 180

Query: 146 ---NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
              + R     KL+ G + + E+ + V   +      D+ G   +   ++S L   +M  
Sbjct: 181 QIIDKRASVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGM---DMSSLMGGLMPK 237

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            R  +  +SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D   
Sbjct: 238 KRV-RRTLSVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNT 296

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
              VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+
Sbjct: 297 TGQVSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPI 356

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L  L +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    
Sbjct: 357 RVELNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTD 416

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++GARRL T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 417 NVGARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 471


>gi|227890939|ref|ZP_04008744.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867348|gb|EEJ74769.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 467

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 290/467 (62%), Gaps = 39/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVG
Sbjct: 5   DKTPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR Q
Sbjct: 65  KTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQ 124

Query: 126 ASINAEERILDALVGKTATS-----------------------------------NTREV 150
           A+  A +R++  +V                                         N R  
Sbjct: 125 AAQQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLS 184

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L+ G + + E+ I+V D S+  +N    G      ++LS L    M   +K +  M
Sbjct: 185 VAEQLKRGLLENNEVTIQVDDPSTQFNNQS--GMLGQMGIDLSSL--SSMMPTKKVERTM 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVAEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+
Sbjct: 301 VQRDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL 
Sbjct: 361 VDDFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 421 TILEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467


>gi|290981275|ref|XP_002673356.1| ATP-dependent protease [Naegleria gruberi]
 gi|284086939|gb|EFC40612.1| ATP-dependent protease [Naegleria gruberi]
          Length = 505

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/442 (46%), Positives = 303/442 (68%), Gaps = 6/442 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           ++   + +P EIVS+LDR I+GQ DAKRAVA+ALRNRWRRQQL + ++DE++PKNIL+VG
Sbjct: 65  LRTKTSLTPSEIVSQLDRNIVGQADAKRAVAVALRNRWRRQQLDSSIKDEIIPKNILMVG 124

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRL++LA APFIK E TK+TE+G+ G +V+ IIRDLV+V I   ++  R 
Sbjct: 125 PTGVGKTEIARRLSKLANAPFIKTEATKYTEVGFHGSDVDSIIRDLVEVGIQHTKDRLRA 184

Query: 121 EVREQASINAEERILDALVGKTATSNT--REVFRKKLRDGEISDKEIDIEVADTSS-DIS 177
             + +A   AE +I++ L GK   S+      +RK+LR G + DKEI++E+       + 
Sbjct: 185 AYKTKAREFAENKIIETLTGKKKNSDESLFNEWRKQLRSGVLDDKEIEVELPVEKPRGLP 244

Query: 178 NFDIPGGASVGILNLSELFSKVM--GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 G     +++ +L S +      + KK RM +++C P+L   E D+L+  D V +
Sbjct: 245 GAGNMQGRMPPQVDIQDLLSPLFGGSGSKTKKRRMKIKECLPKLEESEVDKLLQTDVVIK 304

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I+ VE  GIVF+DE DKI +    +    S EGVQRDLLP++EG++VSTKYG++ TDH
Sbjct: 305 EAIRSVEEDGIVFIDEIDKICS-SYKDRHDASSEGVQRDLLPIIEGTTVSTKYGNVKTDH 363

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA GAFH  +P+D+L E+QGR P+RV LK L + DF  +LT+ E+N++ Q  EL+KT
Sbjct: 364 ILFIACGAFHSVKPSDMLAELQGRLPIRVELKGLTEKDFNRVLTEPETNILRQNIELLKT 423

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L+FT   ++ +A VA  +N+T+ +IGARRL T++E++LE+ISF+A  +  + VVI 
Sbjct: 424 EGVDLEFTPSGVNEIAKVAFEVNTTIENIGARRLITIVEKILEEISFNAPSMSGQKVVIT 483

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            + V+ H+G    ++D+  FIL
Sbjct: 484 DKEVQQHVGALLKKSDLKKFIL 505


>gi|312872351|ref|ZP_07732421.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092174|gb|EFQ50548.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 465

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/466 (42%), Positives = 292/466 (62%), Gaps = 40/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151
            +A +R++  LV                                          + R   
Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDDEDDEELDDQIIDKRASV 183

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             KL+ G + + E+ + V   +      D+ G   +   ++S L   +M   R  +  +S
Sbjct: 184 ADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGM---DMSSLMGGLMPKKRV-RRTLS 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      VSREGV
Sbjct: 240 VKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV L  L +
Sbjct: 300 QRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRE 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++GARRL T
Sbjct: 360 SDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLAT 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 420 ILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 465


>gi|168703139|ref|ZP_02735416.1| heat shock protein HslVU, ATPase subunit HslU [Gemmata
           obscuriglobus UQM 2246]
          Length = 444

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/446 (49%), Positives = 304/446 (68%), Gaps = 17/446 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV+ELD+YI+GQ  AK+AVA+A+RNRWRRQQL A+LR ++ PKNI+L+GPTGVGK
Sbjct: 1   MTPRQIVAELDKYIVGQAAAKKAVAVAIRNRWRRQQLSAELRQDVTPKNIILIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIRDL +  I +V++  R +VRE+A
Sbjct: 61  TEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRDLTEAGIGLVKQEMRVKVREKA 120

Query: 127 SINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIEVAD 171
                ER+LD +V     +                TRE FR KL  GE+ D  +++ V  
Sbjct: 121 QEKVTERLLDLVVPLPKRTAWEPEQEKEDEERRRRTREKFRAKLEAGELEDHVVELTVEQ 180

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            ++ +  F   G  ++ + +L  +F K+M     +  ++ V+     L+  E++ LID  
Sbjct: 181 KATPVQIFSNLGMENMDV-DLQGMFDKMMPKN-AQPRQLPVRDARKVLLEQETESLIDRA 238

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   +I+ VEN+GIVFLDE DK+    +G G  VSR+GVQRDLLP+VEG++V+TK+G +
Sbjct: 239 AVVEQAIERVENHGIVFLDEIDKVCGPSNGQGPDVSRQGVQRDLLPVVEGTTVNTKHGPV 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFIA+GAFHVS+PADL+PE+QGRFP+RV L  L K DF  +LT+ +  L  QY E
Sbjct: 299 KTDHILFIAAGAFHVSKPADLMPELQGRFPIRVELTDLTKPDFLRVLTEPKHALPKQYAE 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TEG+ L+FT D ++ALAD+A ++N    +IGARRL TV+E+V+E++SF   DL  K 
Sbjct: 359 LLRTEGVELEFTTDGLEALADIAFDVNRANQNIGARRLHTVIEKVVEEVSFEGPDLDNKR 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           VVID  +VR  +G      D+  +IL
Sbjct: 419 VVIDGPFVRSKLGPVIQREDLSKYIL 444


>gi|325971101|ref|YP_004247292.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta
           sp. Buddy]
 gi|324026339|gb|ADY13098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta
           sp. Buddy]
          Length = 459

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 202/454 (44%), Positives = 295/454 (64%), Gaps = 19/454 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K      P EIV ELD+YIIGQ+ AKR +A+A+RNR RR++LP ++RDE+ PKNI+++GP
Sbjct: 7   KKLDELKPSEIVKELDKYIIGQKQAKRTIAVAIRNRTRRKRLPLEIRDEVSPKNIIMIGP 66

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RR+A+L+ APFIKVE TK+TE+GYVGR+VE IIRDL+ +A+  V+    + 
Sbjct: 67  TGVGKTEIARRIAKLSNAPFIKVEATKYTEVGYVGRDVESIIRDLMSIAVQQVKAELAER 126

Query: 122 VREQASINAEERILDALVGKTATSN-----------------TREVFRKKLRDGEISDKE 164
             E+     EER+LD L+ +                      TRE FR+ LRDG+  ++E
Sbjct: 127 ELEKVQNRVEERLLDILLPQVKEDPSVDIIAVGSSYTDSQKVTRERFRQMLRDGKFDERE 186

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           ++I V                      +  +   + G+G+    +++V++       +E+
Sbjct: 187 VEINVQSRKRVGIEVLGQPNMEELQEAMQSI-GSIFGNGKAHNRKLTVKRAREIFTEEET 245

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSS 283
           D+ +D D    ++ + VE  GIVF+DE DK+     SG GI VSREGVQRD+LP++EG+S
Sbjct: 246 DKAVDTDRAIDEAKERVEQMGIVFIDEIDKVAKSGGSGGGIDVSREGVQRDILPIIEGTS 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           VSTK+G I+T HILFIASGAFHVS+P+DL+PE+QGRFP+RV L  L   DF  ILT+  +
Sbjct: 306 VSTKWGVIDTTHILFIASGAFHVSKPSDLIPELQGRFPLRVELDDLKADDFYRILTEPAN 365

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            + +QY+EL+KTEG+ + F +++I  ++++A  +NS+  +IGARRL T+ME++LE++SFS
Sbjct: 366 AITMQYRELLKTEGVQIIFEDEAIRRISEIAYEVNSSHDNIGARRLFTIMEKLLEELSFS 425

Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A +L  +T+ I   YV   +GD     D+  FIL
Sbjct: 426 ADELTGQTIPITRAYVDERLGDVIQNQDLSKFIL 459


>gi|227513449|ref|ZP_03943498.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227083322|gb|EEI18634.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
          Length = 483

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 283/468 (60%), Gaps = 41/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  LD+YI+GQ +AK+AVA+ALRNR+RR QL   ++DE+ PKN+L++GPTGVGKT
Sbjct: 19  TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R     +VR  A 
Sbjct: 79  EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138

Query: 128 INAEERILDALVGKTATSNTREVFRK---------------------------------- 153
             A  +++  LV      N +   +                                   
Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENENDDQEEVTDDIREKRM 198

Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
               KLR G + ++E++IE+ D S   S  +     +   ++L++  S +M   + K   
Sbjct: 199 SVSDKLRAGLLENEEVEIEMDDPSQQASGQN--SMMNQMGIDLNDTLSGLMPKKKIK-RT 255

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V +    L+R  S+ L++   ++ ++I   EN GI+F+DE DKI    + N   VSRE
Sbjct: 256 VPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSRE 315

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF  S+P+DL+PE+QGRFP+RV L  L
Sbjct: 316 GVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDL 375

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +K DF  ILT+  ++L  QY  L+ T+ I + FT ++I+ +A++A  +N    +IGARRL
Sbjct: 376 SKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRL 435

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LEDI +   D+Q   + I  +YV   +G      D+  +IL
Sbjct: 436 HTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 483


>gi|157165582|ref|YP_001466813.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus
           13826]
 gi|112801315|gb|EAT98659.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           concisus 13826]
          Length = 440

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV  LD Y+IGQ+DAK+ +AIALRNR+RR +L   L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPREIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLEKSLQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   + N+V+  + ++ ++
Sbjct: 61  GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASYNLVKNEQSEKNQD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   EE+I+  L+           +   + + +    +LR+GE+ +  I+IEV     
Sbjct: 121 KINAYIEEKIVSKLLPPLPKGASEEKQAEYAKSYDKMLNRLRNGELDELSIEIEVQQNPL 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +  +   P  A +      E F K++   G+  K  M V+     L  + +D+++D+++V
Sbjct: 181 EAGSNVPPDMAQM-----QESFIKIIGIGGKNIKKEMKVKDAKKALQSEANDKILDLESV 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++  EN GI+F+DE DK+     S N    S+EGVQRDLLP+VEGS+V+TK+G++ 
Sbjct: 236 KTEALRRAENEGIIFIDEIDKVAVGSGSSNRQDPSKEGVQRDLLPIVEGSNVNTKFGNLK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT  +++L+ QY  L
Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEDALYQILTQPKNSLLKQYIAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           + TE + L+F +++I  +A +A   N  + DIGARRL TV+ERV+EDISF AS+   + +
Sbjct: 356 LSTENVELEFDDEAIKEIARIAHAANEKMEDIGARRLHTVIERVIEDISFEASEKSGEKI 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +  E V+  + D   + D+  +IL
Sbjct: 416 NVTKELVKERLKDVVEDQDLARYIL 440


>gi|227889900|ref|ZP_04007705.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319569|ref|YP_003293225.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii FI9785]
 gi|227849344|gb|EEJ59430.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397944|emb|CAX66958.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii FI9785]
          Length = 464

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/468 (39%), Positives = 285/468 (60%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEKKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180

Query: 155 -----LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
                L  G + ++E+ IEV          D+ G   + + +L       +   +  K  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMGQMGIDMSSLMGD----LMPKKTVKRT 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|42519038|ref|NP_964968.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           NCC 533]
 gi|62286843|sp|Q74JJ5|HSLU_LACJO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|41583325|gb|AAS08934.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           johnsonii NCC 533]
          Length = 464

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/468 (39%), Positives = 285/468 (60%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDAIRNERL 180

Query: 155 -----LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
                L  G + ++E+ IEV          D+ G   + + +L       +   +  K  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMGQMGIDMSSLMGD----LMPKKTVKRT 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|329667428|gb|AEB93376.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           DPC 6026]
          Length = 464

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/468 (39%), Positives = 285/468 (60%), Gaps = 37/468 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +T   +P++IV  LD+YIIGQ +AK++VA+AL NR+RR QLP  ++ ++ PKN+L+ GPT
Sbjct: 1   MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +  + + + V
Sbjct: 61  GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKK---------------------------- 154
           + QA+  A  R++  +V      N     ++                             
Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180

Query: 155 -----LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
                L  G + ++E+ IEV          D+ G   + + +L       +   +  K  
Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMGQMGIDMSSLMGD----LMPKKTVKRT 236

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V      L+++ES +LI+ D++++ +I+  +  GI+F+DE DKI A +      VSRE
Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  IL D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL
Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    + I  +YV   + D     D+  FIL
Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464


>gi|87200647|ref|YP_497904.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136328|gb|ABD27070.1| heat shock protein HslVU, ATPase subunit HslU [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 433

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 228/435 (52%), Positives = 313/435 (71%), Gaps = 2/435 (0%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  + +P+ IV  LD +I+GQ  AK+AVA+ALRNRWRRQ+L ADLRDE+ PKNIL++GPT
Sbjct: 1   MNDSLTPKAIVRALDEHIVGQTAAKKAVAVALRNRWRRQRLSADLRDEVSPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD V
Sbjct: 61  GCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDAV 120

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           RE AS  A +R+L ALVG  A+  TRE F+ +L DG ++D E++IEV D  S +      
Sbjct: 121 REAASKAAMDRLLKALVGDGASEATRESFKARLSDGSMNDVEVEIEVEDAPS-MPMEIPG 179

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  +G++NLS++  K  G    K+ +M V   + +L+ +E+++ +D D V R++I+  E
Sbjct: 180 MGGGIGMINLSDMMGKAFGKQNLKRRKMRVVDAWDKLVDEEAEKRMDQDDVAREAIRNAE 239

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASG
Sbjct: 240 TNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASG 298

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFHV++P+D+LPE+QGR P+RV L +L++ DF  IL++T +NL+ QY+ L+ TE + LD 
Sbjct: 299 AFHVAKPSDMLPELQGRLPIRVELNALSEDDFVRILSETRANLVEQYRALIATENVTLDI 358

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T  +I A+A  A  +N +V +IGARRLQTVME++LE++SF A D   +TV++D  YV   
Sbjct: 359 TPAAIRAIARTAAQVNESVENIGARRLQTVMEKLLEEVSFDAEDRAGETVMVDEAYVADK 418

Query: 423 IGDFPSETDMYHFIL 437
           + +     D+  +IL
Sbjct: 419 LANLAGNADLSKYIL 433


>gi|301299323|ref|ZP_07205608.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853063|gb|EFK80662.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 467

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 290/467 (62%), Gaps = 39/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVG
Sbjct: 5   DKTPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR Q
Sbjct: 65  KTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQ 124

Query: 126 ASINAEERILDALVGKTATS-----------------------------------NTREV 150
           A+  A +R++  +V                                         N R  
Sbjct: 125 AAQQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLS 184

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L+ G + + E+ I+V D S+  +N    G      ++LS L    M   +K +  M
Sbjct: 185 VAEQLKRGLLENNEVTIQVDDPSTQFNNQS--GMLGQMGIDLSSL--SSMMPTKKVERTM 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           +V +    L+++ES++L++   +   +I+  EN GI+F+DE DKI ++   N   VSREG
Sbjct: 241 TVAEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+
Sbjct: 301 VQRDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+  + L+ QY  ++ T+ I + FT ++I  +A+VA  LN    +IGARRL 
Sbjct: 361 VDDFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ F   D+Q   + I   YV   IG    + D+  +IL
Sbjct: 421 TILEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLNQYIL 467


>gi|224476377|ref|YP_002633983.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254802318|sp|B9DPG6|HSLU_STACT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|222420984|emb|CAL27798.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 468

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 299/468 (63%), Gaps = 42/468 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAK+ VAIALRNR+RR QL  +++ E++PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSQLNEYIVGQNDAKKKVAIALRNRYRRSQLDEEMKQEIVPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E R+D+V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEDRKDKVKDE 126

Query: 126 ASINAEERILDALVGKTATS------------------------------------NTRE 149
           A   A ++++  LV                                            R 
Sbjct: 127 AVKKANDKLVKLLVPSMKKKANQNAGNPFESIFGGMMPNFGNNDEEDEEPPTEDIKTKRS 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             R +L +G++ ++++ I+V      +               + ++ +++M   +  +  
Sbjct: 187 EIRSQLLNGQLEEEKVRIKVEQDPGALGMLGTNQNQ-----QVQDMMNQLMPKKKV-ERE 240

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + V+     L  + +D LID +T +++++++ E  GI+F+DE DK+ + + G G  VSR+
Sbjct: 241 VPVKTARKILADEYADELIDHETANQEALELAEQMGIIFIDEIDKVASNNQGGGQDVSRQ 300

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS V TKYGS+NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL
Sbjct: 301 GVQRDILPIVEGSVVQTKYGSVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSL 360

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF  IL + + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL
Sbjct: 361 SVDDFVNILKEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRL 420

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+S+ A  +    V I A+YV   +    +  D+  FIL
Sbjct: 421 HTILEKMLEDLSYEAPGMPNAVVDITAQYVDDKLKSISTNKDLSAFIL 468


>gi|307297638|ref|ZP_07577444.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916898|gb|EFN47280.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 462

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 208/460 (45%), Positives = 308/460 (66%), Gaps = 33/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+ IV ELD+YI+GQ  AKRAVA+A+RNR RRQ+LP ++R +++PKNIL++GPTGVG
Sbjct: 8   ELTPKRIVEELDKYIVGQDKAKRAVAVAMRNRIRRQKLPEEIRRDVIPKNILMMGPTGVG 67

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L G+PF KVE T+FTE+GYVG+NVE IIR+LVDV +N+V++ +  EV  +
Sbjct: 68  KTEIARRLAELTGSPFTKVEATRFTEVGYVGKNVESIIRELVDVGVNMVKQEKMGEVEGK 127

Query: 126 ASINAEERILDALVGKTATS----------------------------NTREVFRKKLRD 157
           AS   EERIL+ALV    T                             N RE +R +LR 
Sbjct: 128 ASYQVEERILEALVPGPQTKAAGPRNIIELFQGQQQPKPSQEEAERIRNRREDYRDRLRS 187

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D +I++EV D S  +       G     +++S +    M   + K+ +M +     
Sbjct: 188 GDLEDLDIEVEVEDHSQQMIMIP---GMEDMGIDMSGVLGG-MVPKKTKRRKMRIADARK 243

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+  E+++L+DMD V  ++I+ V+N G+VF+DE DKI  R   +G  VSREGVQRDLLP
Sbjct: 244 TLLPIEAEKLLDMDKVVAEAIERVQNRGMVFIDEIDKITFRSGSHGPDVSREGVQRDLLP 303

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EG++V+TKYG I TD+ILF+A+GAFH ++P+DL+PE QGRFP+RV L +L++ +F  I
Sbjct: 304 IIEGTTVTTKYGQIRTDYILFVAAGAFHTAKPSDLIPEFQGRFPIRVELDALSQKEFLRI 363

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ +  QY  L++TEG+ + FTED +  +A V+ +LN  + +IGARRL TV+E+VL
Sbjct: 364 LVEPKNAITKQYMALLETEGVKVTFTEDGLREIARVSHSLNEKIENIGARRLYTVVEKVL 423

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++SF+A ++  + +V+D  YV   IG+  ++ D+  FIL
Sbjct: 424 EEVSFNAPEVP-QEIVVDVNYVNERIGEIAADEDLSAFIL 462


>gi|268679660|ref|YP_003304091.1| heat shock protein HslVU, ATPase HslU [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617691|gb|ACZ12056.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 441

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/445 (43%), Positives = 302/445 (67%), Gaps = 16/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P++IV+ LD YIIGQ  AK+A+AIALRNR+RR +L  ++ +E+MPKNIL++G TGV
Sbjct: 1   MNLTPKQIVAYLDEYIIGQFHAKKAIAIALRNRYRRLKLEGEMVEEVMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDL+  +IN+V+   +++ + 
Sbjct: 61  GKTEIARRMAKMLSLPFVKVEASKYTEVGFVGRDVESMVRDLMMASINLVKAEHKEKNQA 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
             +++ E  I++ L+                 + E  R+KLRDGE++  +I+IE++  SS
Sbjct: 121 NIALHVERSIIEKLLPPLPKGVSEEKKADYEKSFERMRQKLRDGELNALKIEIEISQNSS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTV 233
           D+ +  +P      ++ + E F K++GSG+   K  M+V++    L  + S++L+DM+ V
Sbjct: 181 DLGDSSLP----PEMIKVQESFIKILGSGQSSVKKEMTVKEAQEVLKTEASEKLLDMEAV 236

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++ +  EN GI+F+DE DKI    S +     S+EGVQRDLLP+VEGS+V+TKYGS+ 
Sbjct: 237 KSEAKERAENGGIIFIDEIDKIAVNSSQSHRSDPSKEGVQRDLLPIVEGSNVTTKYGSLK 296

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI++GAFH+S+P+DL+PE+QGRFP+RV L SL +     ILT  +++L+ QY+ L
Sbjct: 297 TDHILFISAGAFHLSKPSDLIPELQGRFPLRVELSSLTEEVLYQILTQPKNSLLRQYQAL 356

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++TEG+ L F +++I ++A +A   N    DIGARRL T++E+VLEDISF+A + + +T+
Sbjct: 357 LQTEGVELLFEDEAIRSIAKIAQITNEKTEDIGARRLHTIIEKVLEDISFTADEHKGETL 416

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            +  E V   +       D   +IL
Sbjct: 417 HVTKELVHEKLDAIVESEDSSRYIL 441


>gi|217077876|ref|YP_002335594.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho
           africanus TCF52B]
 gi|226704532|sp|B7IE26|HSLU_THEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|217037731|gb|ACJ76253.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho
           africanus TCF52B]
          Length = 459

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/461 (42%), Positives = 303/461 (65%), Gaps = 26/461 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +P++IV ELD+YI+GQ  AK+AVAIA+RNR RRQ+L  + + E+ PKNIL++G
Sbjct: 1   MSDFDKLTPKQIVEELDKYIVGQSKAKKAVAIAIRNRIRRQKLSEEWKKEITPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+L+G+PF+K+E T+FTE+GYVG+NV+ +IR+LV++A+N+V++ +  
Sbjct: 61  PTGVGKTEIARRLAQLSGSPFLKIEATRFTEVGYVGKNVDSMIRELVEIAVNMVKQQKMK 120

Query: 121 EVREQASINAEERILDALVGKTATSN--TREVFRKKLRDGEISDKEID------------ 166
           EV E+A +N EERILDALV     +      +F  ++   + +D   +            
Sbjct: 121 EVEEKAKLNVEERILDALVPMKKKTQIPFANIFGMQMEKPQQTDDYSENLRKREELRRRL 180

Query: 167 ----------IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                         +TS+    F          ++LS +   +    + K+ +M + +  
Sbjct: 181 RSGELDNEEIEIEIETSNSPIGFIGLPEMEDIGMDLSNVIGNIFPKQK-KRRKMKISEAK 239

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L+  E ++LIDMD   + ++++ +N GI+F+DE DKI A+   +G  VSR+GVQRDLL
Sbjct: 240 KVLLPIEEEKLIDMDETIQTALELAQNRGIIFIDEMDKIAAKTGSSGQDVSRQGVQRDLL 299

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEG++++TKYG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF  
Sbjct: 300 PIVEGTTITTKYGPVKTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLKEEDFVR 359

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + E+ L  QY+ L+ TE + L+FT+D I  LA V+  LN  + +IGARRL TV+E+V
Sbjct: 360 ILVEPENALTKQYQALLYTENVQLEFTDDGIKELARVSYKLNQKLENIGARRLYTVLEKV 419

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+ F A +++EK +++DA+YV   +     + D+  +IL
Sbjct: 420 LEDVLFEAPEIEEK-IIVDADYVTKKLKGIIEDEDLTSYIL 459


>gi|315658457|ref|ZP_07911329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
 gi|315496786|gb|EFU85109.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
          Length = 467

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 186/467 (39%), Positives = 293/467 (62%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+  ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A   A ++++  LV                                           R  
Sbjct: 127 AVAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            R++L  G++ D+++ I+V      +          +      ++ +++M   +  +  +
Sbjct: 187 IRQQLLAGKLEDEKVRIKVEQDPGALGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V+     L  D +D LID +T ++++I++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 PVKAARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL 
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
            +DF  ILT+ + +L+ QY+ L+KTE + ++FT+ +I  LA++A  +N    +IGARRL 
Sbjct: 361 VNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467


>gi|313638154|gb|EFS03411.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri
           FSL S4-171]
          Length = 456

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/453 (42%), Positives = 296/453 (65%), Gaps = 33/453 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++GPT
Sbjct: 6   LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +   V
Sbjct: 66  GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125

Query: 123 REQASINAEERILDALVGKTATSNT-------------------------------REVF 151
           R +A  NAE+R++  L        T                               R   
Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
             +L++GE+ D+ + +EV +  + +   D+  GA +  +N  +     M   +KKK + +
Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKXT 243

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L  DE+ +LID + +  + I   E  G++F+DE DKI +++ G    VSREGV
Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L +
Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T
Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++E++LED+ F A ++  ++V +   YV   + 
Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLA 456


>gi|289550955|ref|YP_003471859.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180487|gb|ADC87732.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
          Length = 467

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 186/467 (39%), Positives = 293/467 (62%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+  ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A   A ++++  LV                                           R  
Sbjct: 127 AVAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            R++L  G++ D+++ I+V      +          +      ++ +++M   +  +  +
Sbjct: 187 IRQQLLAGKLEDEKVRIKVEQDPGALGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V+     L  D +D LID +T ++++I++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 PVKTARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL 
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLT 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
            +DF  ILT+ + +L+ QY+ L+KTE + ++FT+ +I  LA++A  +N    +IGARRL 
Sbjct: 361 VNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467


>gi|81428595|ref|YP_395595.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610237|emb|CAI55286.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 475

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/473 (39%), Positives = 285/473 (60%), Gaps = 44/473 (9%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+ IV+ELD+++IGQ  AK+AVA+AL NR+RR QL   ++ E+ PKN+L++GPTGV
Sbjct: 7   MNKTPKSIVAELDKFVIGQDKAKKAVAVALYNRYRRMQLSTKMQQEITPKNLLMIGPTGV 66

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++  AP IKVE TKFTE+GYVGR+VE ++RDL DVA+++    +   VR 
Sbjct: 67  GKTEIARRLAKVVDAPLIKVEATKFTEVGYVGRDVESMVRDLADVAVHMEESEQFKNVRG 126

Query: 125 QASINAEERILDALVGKTATSN-------------------------------------- 146
           +A+  A++R++  LV                                             
Sbjct: 127 KAARQADKRLVKLLVPGIKKEQRKNNNSMNDLMSMFTALQNGETPAGLNQAETEEVTDEV 186

Query: 147 --TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
              R   +++L  G + D+EI+I+V +        D+ G      ++L++    +M   +
Sbjct: 187 RDQRLSVKEQLDKGLLDDREIEIQVDEPKKAAPMNDMMGQMG---IDLNDTLGSIMPKKK 243

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                ++V++     +++ESD+L++   ++ D++Q  EN GI+F+DE DKI A       
Sbjct: 244 MV-RTVTVKEAREIFIQEESDKLVNHADIYHDALQRAENTGIIFIDEIDKIAAGGKKQSG 302

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSREGVQRD+LP+VEGS V+TKYG + TDHILFI SGAF  S+P+DL+ E+QGRFP+RV
Sbjct: 303 EVSREGVQRDILPIVEGSQVNTKYGVLKTDHILFIGSGAFAESKPSDLIAELQGRFPIRV 362

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L ++DF  ILT+  + L+ QY  L+  +G+ + FT ++I  +A +A  +N    +I
Sbjct: 363 ELEDLTEADFVRILTEPNNALVKQYMALIGADGVHVTFTMEAIGRIAAIAFQVNHDTENI 422

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL T++E++LEDI F   D+Q   + I  +YV   IG   ++ D+  FIL
Sbjct: 423 GARRLATILEKLLEDILFEGPDMQMGDITITEQYVNDKIGKIVADKDLTRFIL 475


>gi|163791336|ref|ZP_02185749.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
 gi|159873415|gb|EDP67506.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
          Length = 473

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/476 (42%), Positives = 297/476 (62%), Gaps = 42/476 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    + +PREIV+ELD+YIIGQ  AK++VAIALRNR RR +L  D++ E+ PKN+L++G
Sbjct: 1   MMTKEDMTPREIVAELDKYIIGQNMAKKSVAIALRNRQRRLKLSEDMQKEITPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA +  APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + +  
Sbjct: 61  ATGVGKTEIARRLATIVQAPFVKVEATKFTEVGYIGRDVESMVRDLVESSIQIVEKQQHS 120

Query: 121 EVREQASINAEERILDALVG---------------------------------------K 141
            V  QA  NA ERI+  L+                                         
Sbjct: 121 NVYTQAERNAIERIVKILIPGIKKEKKQAASTNPFESMFKNMGVDPNQLAPQAEEEEEVT 180

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
            A S  RE  ++++R+G + ++EI ++V      + N  +  G     ++L+E    +  
Sbjct: 181 EAISTDREKMKQQIRNGLLDEREITVQVESQKKAM-NSPMGAGLEQMGIDLNETLGALRP 239

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
             + K   ++V+K     +++ES++L++ + +H  ++ + +N GI+F+DEFDKI +++  
Sbjct: 240 KTKIK-RTVTVKKAIDLFIQEESEKLVNQEDIHSMAVDLAQNSGIIFIDEFDKITSKNQN 298

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
           +G  VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRFP
Sbjct: 299 SG-TVSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRFP 357

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +RV L  L K DF  ILT+  + L+ QY  ++ TE + + FT +SI+ LA++A  +N   
Sbjct: 358 IRVELDDLTKEDFVKILTEPNNALLKQYIAMLGTENVKITFTYESIERLAEIAYRVNQET 417

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +IGARRL T++E++LED+ F A D+Q   + I   YV   I     + D+  +IL
Sbjct: 418 DNIGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 473


>gi|191638402|ref|YP_001987568.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           casei BL23]
 gi|190712704|emb|CAQ66710.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           casei BL23]
 gi|327382431|gb|AEA53907.1| hypothetical protein LC2W_1574 [Lactobacillus casei LC2W]
 gi|327385630|gb|AEA57104.1| hypothetical protein LCBD_1607 [Lactobacillus casei BD-II]
          Length = 469

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYGQMG---IDLSDTIGALMPKKKV-ERT 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VSRE
Sbjct: 242 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 302 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGARRL
Sbjct: 362 TEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 422 ATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|73662823|ref|YP_301604.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642438|sp|Q49X39|HSLU_STAS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|72495338|dbj|BAE18659.1| ATP-dependent protease ATPase subunit [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 470

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/470 (40%), Positives = 295/470 (62%), Gaps = 44/470 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPRDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLTEEEKQEVAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+ARL GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++
Sbjct: 67  KTEIARRMARLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKALVQDE 126

Query: 126 ASINAEERILDALVGKTAT--------------------------------------SNT 147
           A   A E+++  LV                                              
Sbjct: 127 AQDKANEKLVKLLVPSMKKKANNNTNSNNPLESLFGGSIPNFGQNNDDEEETPTDEVKTK 186

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
           R   +++L +G++ D+++ ++V    + +          +      ++ +++M   +  +
Sbjct: 187 RSEIKQQLLNGQLEDEKVRLKVEQDPAAMGMLGTNQNQQM-----QDMMNQLMPKKKV-E 240

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
             + V+     L  + +D LID +T ++++I++ E  GI+F+DE DK+   +  +G  VS
Sbjct: 241 REVPVKTARKILTDEFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQNSGQDVS 300

Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327
           R+GVQRD+LP++EGS V TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+
Sbjct: 301 RQGVQRDILPILEGSMVQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELE 360

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           SL+  DF  ILT+ + +LI QY+ L++TE + + FT+++I  LA++A  +N    +IGAR
Sbjct: 361 SLSVEDFVRILTEPKLSLIKQYEALLQTEQVTVKFTDEAIKRLAEIAFQVNQDTDNIGAR 420

Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RL T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 421 RLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|195953180|ref|YP_002121470.1| ATP-dependent protease ATP-binding subunit HslU [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932792|gb|ACG57492.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 437

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 198/437 (45%), Positives = 306/437 (70%), Gaps = 6/437 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +L  N +P+EIV+ LD+YIIGQQ+AK+ VAIALRNRWRRQ+LP  +RDE+ PKNIL++GP
Sbjct: 6   ELLKNLTPKEIVNYLDQYIIGQQEAKKQVAIALRNRWRRQKLPPHIRDEVSPKNILMIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA L  APF+KVE TK+TE+GYVGR+VE +IR+LV+++  +V++ R D 
Sbjct: 66  TGVGKTEIARRLANLIKAPFLKVEATKYTEVGYVGRDVESMIRELVNISYQLVKKERTDG 125

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V++ A   A  ++   +      S +  ++   ++ G+  D+ I+I++ +  S      I
Sbjct: 126 VKDVAREEAIRKVAQKISSLKNVSISEAIYG--IKSGKYDDELIEIDIQEKQS---MPAI 180

Query: 182 PGGASVGILNLSELFSKVMGS-GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                 G+ +L +    ++G  G ++K ++ V+     L ++ ++  ID + +  +++ +
Sbjct: 181 EVMGLQGLEDLDKQIRNLLGGIGGRRKKKLKVKDALNILEQEAAEEFIDKEDLESEAVFL 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            EN+GIVF+DE DKI  +  G G  VSREGVQRDLLP+VEG++V+TKYG + TDHILFIA
Sbjct: 241 AENFGIVFIDEIDKIAVKHEGVGHSVSREGVQRDLLPIVEGTTVNTKYGPVKTDHILFIA 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +GAFH+++P+DL+PE+QGRFP+RV LK+L   DF  IL + ++ L  QYKEL+KTE + +
Sbjct: 301 AGAFHMAKPSDLVPELQGRFPIRVELKALTMEDFERILREPQNALTKQYKELLKTENVDI 360

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           DFT+++I  +A +A  +NS   +IGARRL T+ME+++EDISF+A D++ + ++ID ++V 
Sbjct: 361 DFTDEAIKEIARIAEYINSKDENIGARRLYTIMEKLVEDISFNAPDMEGQHIIIDDKFVL 420

Query: 421 LHIGDFPSETDMYHFIL 437
             + D   + ++  +IL
Sbjct: 421 SRLEDLAKDPEISKYIL 437


>gi|227535111|ref|ZP_03965160.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187252|gb|EEI67319.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 470

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 7   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEINPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 67  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYGQMG---IDLSDTIGALMPKKKV-ERT 242

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VSRE
Sbjct: 243 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVSRE 302

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 303 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 362

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGARRL
Sbjct: 363 TEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGARRL 422

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 423 ATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 470


>gi|327398617|ref|YP_004339486.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea
           maritima DSM 10411]
 gi|327181246|gb|AEA33427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea
           maritima DSM 10411]
          Length = 450

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/451 (45%), Positives = 307/451 (68%), Gaps = 17/451 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P++IV  LD+YI+GQ++AK+A+AIALR R+RR ++  D+++E+MPKNIL++GPT
Sbjct: 1   MEHKLTPKKIVELLDKYIVGQKEAKKAIAIALRTRYRRHKVSGDIKEEIMPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++  APF+KVE +KFTE+GYVGR+VE IIRDL  ++  +V++    +V
Sbjct: 61  GVGKTEIARRIAKITNAPFVKVEASKFTEVGYVGRDVESIIRDLARISYEMVKQQELKKV 120

Query: 123 REQASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVA 170
            ++A   AEER+LD LV                 S TRE FR+KL+ GE+++K I+I + 
Sbjct: 121 EDKAEKEAEERVLDILVPPVKKRSIYDTEEEERVSRTREKFREKLKSGELNEKIIEITIN 180

Query: 171 DTSSDISNFDIP---GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               +     I            NL ++   ++  GRKK  +++V++    L  +E+ +L
Sbjct: 181 PQKPEQMVPFIEVAAAPIDELDSNLKDMLDNLL-PGRKKTRKVTVKEALKILKDEEAQKL 239

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVST 286
           ID D V   +I+   N GIVF+DE DKI+++ S   G  VSREGVQRDLLP+VEGSSV+T
Sbjct: 240 IDKDKVKEKAIEKASNDGIVFIDEIDKIISKSSSTSGPDVSREGVQRDLLPIVEGSSVNT 299

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           +YG I TDHILFIA+GAFH  +P+D++PE+QGRFP+RV L+ L K DF  IL + ++ LI
Sbjct: 300 RYGIIKTDHILFIAAGAFHQVKPSDMIPELQGRFPIRVELRPLTKGDFIRILREPKNALI 359

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK L++TEGI + F++D+I+ +A++A  +N    +IGARRL T++E++LEDISF A D
Sbjct: 360 KQYKALLETEGIEIKFSDDAIEKIAEIAEKINKETENIGARRLHTLLEKLLEDISFEAPD 419

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++ K + IDA+YV   +     + D+  +IL
Sbjct: 420 IEPKEITIDAKYVGEKLSSIVEDRDLSRYIL 450


>gi|314936585|ref|ZP_07843932.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655204|gb|EFS18949.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 466

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/466 (40%), Positives = 299/466 (64%), Gaps = 40/466 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDE 126

Query: 126 ASINAEERILDALVGKTAT----------------------------------SNTREVF 151
           A+  A E+++  LV                                          R   
Sbjct: 127 ATQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEI 186

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R++L  G++ ++++ I+V      +          +      ++ +++M   RK +  + 
Sbjct: 187 RQQLLAGKLEEEKVRIKVEQDPGALGMLGTSQNQQM-----QDMMNQLM-PKRKVEREVP 240

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +S +G  VSR+GV
Sbjct: 241 VKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDVSRQGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL  
Sbjct: 301 QRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLTV 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           +DF  ILT+ + +LI QY+ L+KTE + ++F++++I  LA++A  +N    +IGARRL T
Sbjct: 361 NDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 ILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466


>gi|296273490|ref|YP_003656121.1| heat shock protein HslVU ATPase subunit HslU [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097664|gb|ADG93614.1| heat shock protein HslVU, ATPase subunit HslU [Arcobacter
           nitrofigilis DSM 7299]
          Length = 442

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/444 (42%), Positives = 291/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAK+ +A+ALRNR+RR QL  ++++E+MPKNIL++G TGV
Sbjct: 1   MNMTPKEIVKFLDDYVIGQNDAKKTIALALRNRYRRMQLAPEIQEEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++   PF+KVE +K+TE+G+VGR+VE +IRDLV  ++++V +   +++++
Sbjct: 61  GKTEIARRLAKMMSLPFVKVEASKYTEVGFVGRDVESMIRDLVFASMDLVTKEYEEKIQD 120

Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTS- 173
                  ++I++ LV                 T     +KL  GE+ DK I+IE+   + 
Sbjct: 121 GIEQEVNKQIIEKLVPHLPEGASESSKESFIKTFNKMEEKLLKGELEDKVIEIELPKKAH 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            ++ +   P   +    +L+ +   +  +  K K  + ++     L    S++LID +++
Sbjct: 181 VEVIDSSFPIDMTSMQESLNNMLGSL--NKDKIKKEVKIKDARKLLRSGASEKLIDQESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++I+ VEN GI+F+DE DKI +  S      S+EGVQRDLLP+VEGS+V TKYG + T
Sbjct: 239 KHEAIRRVENGGIIFIDEIDKIASGKSNQNQDPSKEGVQRDLLPIVEGSNVQTKYGQVKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFHVS+P+DLLPE+QGRFP+RV L +L++     ILT+T+++L+ QYK L+
Sbjct: 299 DHILFIAAGAFHVSKPSDLLPELQGRFPLRVELNALDEEALYKILTNTKNSLLKQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + EG+ L+F +++I + A ++V  N    DIGARRL TV+E+VLEDISF A +   +T++
Sbjct: 359 EVEGVTLEFDDEAIHSFAHLSVEANQKAEDIGARRLHTVIEKVLEDISFDADEKNGETII 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I  + V   + D   + D   +IL
Sbjct: 419 ITKKLVEEKLSDIVKDEDTARYIL 442


>gi|295696108|ref|YP_003589346.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM
           2912]
 gi|295411710|gb|ADG06202.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM
           2912]
          Length = 462

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/460 (44%), Positives = 303/460 (65%), Gaps = 30/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP ++R+E++PKNIL++GPTGVG
Sbjct: 5   QLTPKQIVAELDKYIVGQREAKRAVAVALRNRYRRNRLPDEMREEVVPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLARL  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI +VR+ R  EV  +
Sbjct: 65  KTELARRLARLVRAPFVKVEATKFTEVGYVGRDVDSMVRDLVETAIRMVRQERMAEVELE 124

Query: 126 ASINAEERILDAL----------------------------VGKTATSNTREVFRKKLRD 157
           A   AEER++  L                               +  S  RE   ++L  
Sbjct: 125 ARKAAEERLIAILAHEGDGPTGFRNPLEMLFNPGQEQSRPREPDSKDSARREEVARRLAA 184

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ ++ I+IEV D++    +    G      + + +L  + +   RK+K +++V++   
Sbjct: 185 GELEEQVIEIEVEDSTLPFVDVGGTGQFEEMGMQIQDLLGQFLPR-RKRKRKVTVREARH 243

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L + E+ +LIDMD V  ++++  E  GI+F+DE DKI  +D  +G  VSREGVQRD+LP
Sbjct: 244 ILTQQEAQKLIDMDEVQAEAVRRAEQSGIIFIDEIDKIAGKD-RHGPDVSREGVQRDILP 302

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L SL+  DFR I
Sbjct: 303 IVEGSTVMTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRIELHSLSAEDFRRI 362

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+    LI QY  L+ TEG+ + FT+ ++  LA++A  +N    +IGARRL T+ME+++
Sbjct: 363 LTEPRHALIKQYTALLATEGVNVVFTDAAVQRLAELAAAVNQQTENIGARRLNTLMEKLM 422

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+ F A D+    + I  EYV   +     + D+  +IL
Sbjct: 423 EDLFFEAPDIFLDKIEITPEYVDEKLASIAGDQDLSQYIL 462


>gi|70726661|ref|YP_253575.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           haemolyticus JCSC1435]
 gi|123762301|sp|Q4L5V6|HSLU_STAHJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|68447385|dbj|BAE04969.1| heat shock protein HslU [Staphylococcus haemolyticus JCSC1435]
          Length = 467

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/461 (41%), Positives = 293/461 (63%), Gaps = 29/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+LD YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLDEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++
Sbjct: 67  KTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKGLVKDE 126

Query: 126 ASINAEERILDALVG--KTATSNTREVFRKKL------------------------RDGE 159
           A   A E+++  LV   K   SN        L                        +  E
Sbjct: 127 AVNKANEKLVKLLVPSMKKKASNNSNPLESLLGGAIPNFGNNDDEEEETPTEEIKTKRSE 186

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK---IRMSVQKCY 216
           I  + +D ++ +    I     PG   +   N ++    +M     K+     + V+   
Sbjct: 187 IKKQLLDGKLEEEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKRKVEREVPVKTAR 246

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L  D +D LID +T +++++++ E  GI+F+DE DK+   ++ +G  VSR+GVQRD+L
Sbjct: 247 KILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNANSGQDVSRQGVQRDIL 306

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL   DF  
Sbjct: 307 PILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLTVDDFYR 366

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T++E++
Sbjct: 367 ILTEPKLSLIKQYEALLQTEEVTVNFTKEAITRLAEMAYQVNQDTDNIGARRLHTILEKM 426

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 427 LEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|159901849|gb|ABX10584.1| ATP-dependent protease ATP-binding subunit [uncultured
           planctomycete 5H12]
          Length = 477

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/456 (42%), Positives = 289/456 (63%), Gaps = 30/456 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PRE+V +LDRYI+GQ  AKRAV+IA+RNRWRRQQLP DL+ E+ PKNIL++G TGVGKT
Sbjct: 26  TPRELVEQLDRYIVGQARAKRAVSIAIRNRWRRQQLPDDLKGEVAPKNILMIGSTGVGKT 85

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+L  APFIKVE TK+TE+GY GR+VE ++R+LV+ +I+++R + +  V   A 
Sbjct: 86  EIARRLAKLTDAPFIKVEATKYTEVGYYGRDVESMVRELVENSISLIRATEKQRVETLAR 145

Query: 128 INAEERILDALVGKTAT--------------------------SNTREVFRKKLRDGEIS 161
              ++++LD L  +                               TR   +  L  GE+ 
Sbjct: 146 DRTDDKLLDLLAPRPKAYEFQPAGQDGASSTEAVAVELESDSYERTRAKMKDMLVAGELE 205

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           ++++++ +   S  +       G     ++   +  K+M         ++V +    +  
Sbjct: 206 ERQVELTIEQKSQPV--MMGGVGVEQMDMDFQGMLEKIMPKNTV-TRSLTVAEARKVVFD 262

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
            + D L+D D ++  +I   ++ GI+FLDE DK++A D G G  VSR+GVQRDLLP+VEG
Sbjct: 263 QQCDSLLDQDKINEMAIVQAQDMGIIFLDELDKVIASD-GKGTDVSRQGVQRDLLPIVEG 321

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++V TKYG + TDHILF+A+GAFH  +P+DL+PE+QGRFP+RV L  L K DF  ILT+ 
Sbjct: 322 TTVQTKYGYVKTDHILFVAAGAFHKHQPSDLMPELQGRFPIRVELDDLTKKDFVQILTEP 381

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L  QY  L+KTEG+ L+FT+D+++ALA+ A  +N T  +IGARRL T++E++LE++S
Sbjct: 382 KNSLTRQYAALLKTEGVELEFTQDAVEALAEYAFQVNQTTQNIGARRLYTILEQLLEELS 441

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F + D++   V I+  YV   +     + D+  FIL
Sbjct: 442 FESPDMKMGKVEINGPYVSDRLAAIADDEDLSRFIL 477


>gi|258508411|ref|YP_003171162.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           rhamnosus GG]
 gi|258539624|ref|YP_003174123.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           rhamnosus Lc 705]
 gi|257148338|emb|CAR87311.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Lactobacillus rhamnosus GG]
 gi|257151300|emb|CAR90272.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU
           [Lactobacillus rhamnosus Lc 705]
 gi|259649725|dbj|BAI41887.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           GG]
          Length = 469

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/468 (40%), Positives = 290/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNRRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D+EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYGQMG---IDLSDTIGALMPKKKV-ERT 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D      VSRE
Sbjct: 242 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 302 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 422 ATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|301066451|ref|YP_003788474.1| ATP-dependent protease HslVU ATPase subunit [Lactobacillus casei
           str. Zhang]
 gi|300438858|gb|ADK18624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           casei str. Zhang]
          Length = 469

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/468 (40%), Positives = 289/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYGQMG---IDLSDTIGALMPKKKV-ERT 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VSRE
Sbjct: 242 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 302 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGARRL
Sbjct: 362 TEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    V +  +YV   IG   ++++M  +IL
Sbjct: 422 ATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|199599530|ref|ZP_03212918.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|199589571|gb|EDY97689.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
          Length = 469

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/468 (40%), Positives = 290/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMTAGDDADAGGEVTDDIRNRRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D+EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYGQMG---IDLSDTIGALMPKKKV-ERT 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D      VSRE
Sbjct: 242 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 302 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +IGARRL
Sbjct: 362 TEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 422 ATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|328957571|ref|YP_004374957.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp.
           17-4]
 gi|328673895|gb|AEB29941.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp.
           17-4]
          Length = 474

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 198/477 (41%), Positives = 296/477 (62%), Gaps = 43/477 (9%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    + +PREIV+ELD+YIIGQ  AK++VA+ALRNR RR +L   ++ E+ PKN+L++G
Sbjct: 1   MMTKEDMTPREIVAELDKYIIGQTMAKKSVAVALRNRQRRLKLDEAMQKEITPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA +  APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + +  
Sbjct: 61  ATGVGKTEIARRLATIVRAPFVKVEATKFTEVGYIGRDVESMVRDLVEASIQIVEKQQYS 120

Query: 121 EVREQASINAEERILDALVG---------------------------------------- 140
           +V  +A  NA ERI+  L+                                         
Sbjct: 121 QVYSRAEKNAIERIVKILIPGIKKEKRQSTSSNPLESMFKNMGVDPNQLAPQAEEEEEEV 180

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
             A S  RE  ++++R+G + ++E+ I+V      + N  +  G     ++L+E    + 
Sbjct: 181 TEAISTDRETMKQQIRNGLLDERELTIQVESQKKSM-NSPMGAGLEQMGIDLNETLGALR 239

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
              + K   ++V+K     +++ES +L++ + +   ++ + +N GI+F+DEFDKI +++ 
Sbjct: 240 PKSKVK-RTVTVKKAIELFIQEESAKLVNQEDIQSMAVDLAQNAGIIFIDEFDKITSKNE 298

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            +G  VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRF
Sbjct: 299 NSG-TVSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRF 357

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L  L K DF  ILT+ ++ L+ QY  ++ TE + + FT +SI+ LAD+A  +N  
Sbjct: 358 PIRVELDDLTKEDFVKILTEPDNALLKQYIAMLGTENVNITFTYESIERLADIAYQVNHE 417

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL T++E++LED+ F A D+Q   + I   YV   I     + D+  +IL
Sbjct: 418 TDNIGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 474


>gi|228475019|ref|ZP_04059747.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis SK119]
 gi|228271004|gb|EEK12392.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           hominis SK119]
          Length = 466

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/466 (40%), Positives = 299/466 (64%), Gaps = 40/466 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDE 126

Query: 126 ASINAEERILDALVGKTAT----------------------------------SNTREVF 151
           A+  A E+++  LV                                          R   
Sbjct: 127 ATQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEI 186

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R++L  G++ ++++ I+V      +          +      ++ +++M   RK +  + 
Sbjct: 187 RQQLIAGKLEEEKVRIKVEQDPGALGMLGTSQNQQM-----QDMMNQLM-PKRKVEREVP 240

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +S +G  VSR+GV
Sbjct: 241 VKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDVSRQGV 300

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL  
Sbjct: 301 QRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLTV 360

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           +DF  ILT+ + +LI QY+ L+KTE + ++F++++I  LA++A  +N    +IGARRL T
Sbjct: 361 NDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGARRLHT 420

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 ILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466


>gi|302779676|ref|XP_002971613.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii]
 gi|300160745|gb|EFJ27362.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii]
          Length = 444

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/438 (47%), Positives = 303/438 (69%), Gaps = 12/438 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQ  AKRAVA+A RNRWRR ++P +LRDE++PKNIL++GPTG GK
Sbjct: 12  LTPAKVVEVLDRYIVGQTAAKRAVAVAFRNRWRRHRIPVELRDEIVPKNILMIGPTGCGK 71

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 72  TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 131

Query: 127 SINAEERILDALVGKTATS------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             + E+RILD LVG            + ++FRK  R+G I +++I ++V +    +    
Sbjct: 132 EKSVEDRILDVLVGVQQEEISEKSLTSMDMFRKLYREGAIDNRKIQLDVPEGRVRLPVDV 191

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           +  G     L +++L  KV+ S + ++  ++V +  P L   E ++ +  D + +D+IQ+
Sbjct: 192 MGNG-----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAIQL 246

Query: 241 VENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            E+ GIVF+DE DKIV       G   S EGVQRDLLP++EGS V+TKYG++NTDHILFI
Sbjct: 247 TESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHILFI 306

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH  +P+D+L E+QGR P+RV LK+L + D   ILT+ E N++ Q + L+KTEG+ 
Sbjct: 307 CSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLKTEGVE 366

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FTED++  LA+VA  +N ++ +IGARRL TV+ERV+EDISFSA +   + ++ID E V
Sbjct: 367 LIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKEKV 426

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  +GD  ++ D+  F+L
Sbjct: 427 RKSVGDLLNKMDLSKFVL 444


>gi|239631509|ref|ZP_04674540.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525974|gb|EEQ64975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 470

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/468 (40%), Positives = 289/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 7   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 66

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 67  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYGQMG---IDLSDTIGALMPKKKV-ERT 242

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A +  N   VSRE
Sbjct: 243 MTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVSRE 302

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 303 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 362

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGARRL
Sbjct: 363 TEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGARRL 422

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+    V +  +YV   IG   ++++M  +IL
Sbjct: 423 ATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 470


>gi|116494891|ref|YP_806625.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           casei ATCC 334]
 gi|116105041|gb|ABJ70183.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           casei ATCC 334]
          Length = 469

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 289/468 (61%), Gaps = 42/468 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125

Query: 128 INAEERILDALVGKTATS--------------------------------------NTRE 149
             A +R++  LV                                            N R 
Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              ++L  G + D EI + V D        D+ G      ++LS+    +M   +  +  
Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYGQMG---IDLSDTIGALMPKKKV-ERT 241

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           M+V++     +++ESD+L++   ++ D+I   EN GI+F+DE DKI A +  N   VSRE
Sbjct: 242 MTVKEAREIFIKEESDKLVNHADIYHDAIPSAENNGIIFIDEIDKIAAGNKHNSGEVSRE 301

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV LK L
Sbjct: 302 GVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELKDL 361

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            + DF  ILT+ ++ LI QY  L+  +G+ + FT++++D +A++A  +N    +IGARRL
Sbjct: 362 TEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGARRL 421

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 422 ATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469


>gi|118475468|ref|YP_892168.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414694|gb|ABK83114.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 440

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAKR +A+ALRNR+RR +L   ++++++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V++ +R++  +
Sbjct: 61  GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRK----------KLRDGEISDKEIDIEVADTSS 174
           + +   E++IL+ L+       + +  R           KL+ GE+    I++++  ++ 
Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDIDQST- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               F+  G     +  + E F KV+  + +K K    V+     L  + S++++DM+++
Sbjct: 180 ----FEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKNEASEKILDMESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             ++++  EN GI+F+DE DK+      +G    S+EGVQRDLLP+VEGS+VSTK+G++ 
Sbjct: 236 KTEALKRAENEGIIFIDEIDKVAVSSGNSGRQDPSKEGVQRDLLPIVEGSNVSTKFGNLK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV+L SL++     ILT  +++L+ QYK L
Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVNLDSLDEKALYEILTKPKNSLLSQYKAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +  EG+ L+F+++SI  +A V  N N  V DIGARRL TV+E+VLEDISF A   + + V
Sbjct: 356 LGVEGVELEFSDESIKEIAKVTQNTNQKVEDIGARRLHTVIEKVLEDISFDADSYKNEKV 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V   +GD     D+  +IL
Sbjct: 416 TITKELVDKKLGDICQNEDLAKYIL 440


>gi|315178885|gb|ADT85799.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 406

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 198/408 (48%), Positives = 275/408 (67%), Gaps = 13/408 (3%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
            +    LR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE
Sbjct: 1   MRWEESLRVEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVE 60

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT-----------SNTRE 149
            IIRDL DVA+ +  +   ++V+ +A   AEERILDAL+                S+TR+
Sbjct: 61  TIIRDLTDVAVKMTHQQAMEKVKFRAEEQAEERILDALLPPARDAWGEAEHNDTASSTRQ 120

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
            FRKKLR+G++ DKEI++ VA     +     PG   +    L  LF   +G   KKK +
Sbjct: 121 TFRKKLREGKLDDKEIEVNVAVAQMGVEIMAPPGMEEM-TNQLQGLFQN-LGGDTKKKRK 178

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           + ++  +  L  +E+ +L++ + +   +I  VEN GIVF+DE DKI  R   +G  VSRE
Sbjct: 179 LKIKDAFKALTEEEAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGESSGPDVSRE 238

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLPL+EGS+V+TK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L++L
Sbjct: 239 GVQRDLLPLIEGSTVTTKHGMVRTDHILFIASGAFQVARPSDLIPELQGRLPIRVELEAL 298

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +  DF+ ILT+ +++L  QY  LMKTE + + FTED I  +AD A  +N T  +IGARRL
Sbjct: 299 SSDDFKRILTEPKASLTEQYMALMKTEEVDIAFTEDGIKQIADAAWQVNETTENIGARRL 358

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TVMER++++ISF A++    ++ ID+ YVR  +G+   + D+  FIL
Sbjct: 359 HTVMERLMDEISFDATEKAGASLTIDSAYVRAKLGELVEDEDLSRFIL 406


>gi|314933433|ref|ZP_07840798.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae
           C87]
 gi|313653583|gb|EFS17340.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae
           C87]
          Length = 467

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/467 (39%), Positives = 297/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A   A ++++  LV                                           R  
Sbjct: 127 AIAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L +G++  +++ I+V    + +          +      ++ +++M   +  +  +
Sbjct: 187 IKKQLEEGKLEKEKVRIKVEQDPAAMGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +LI QY+ L++TE + ++FTE+++  LA++A  +N    +IGARRL 
Sbjct: 361 VDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|223044232|ref|ZP_03614269.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           capitis SK14]
 gi|222442382|gb|EEE48490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           capitis SK14]
          Length = 467

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/467 (39%), Positives = 297/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A   A ++++  LV                                           R  
Sbjct: 127 AIAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L +G++  +++ I+V    + +          +      ++ +++M   +  +  +
Sbjct: 187 IKKQLEEGKLEQEKVRIKVEQDPAAMGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +LI QY+ L++TE + ++FTE+++  LA++A  +N    +IGARRL 
Sbjct: 361 VDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|300870913|ref|YP_003785784.1| ATP dependent protease HslVU/ClpYQ ATPase subunit [Brachyspira
           pilosicoli 95/1000]
 gi|300688612|gb|ADK31283.1| ATP dependent protease HslVU/ClpYQ, ATPase subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 453

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 197/450 (43%), Positives = 303/450 (67%), Gaps = 16/450 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP +L+DE+ PKNI+L+GP
Sbjct: 6   KLESELTPRRIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEELKDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+ AI  ++ S   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNAAIFELKTSMMKE 125

Query: 122 VREQASI--------------NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           V ++A+                 E+  + +        N +E  +K++ +G+  +  ++I
Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEDNEIISDEEAEKKKNAKEQIKKRIANGDFDESYVEI 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +++     +    IPG        +  +   +M   + K  ++ V++    L+ + S+ L
Sbjct: 186 KISSNQGRMFGI-IPGMGFEENDMIQSMVGSIMPQNK-KNKKLRVKEAKKYLINEASESL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           IDM+ V  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+TK
Sbjct: 244 IDMEKVTSDALSLAENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNTK 303

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ +  
Sbjct: 304 YGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKEDFKDILINPKNAITK 363

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL+KTEG+ ++F +++++ +AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + 
Sbjct: 364 QYQELLKTEGVTIEFEDEALEKIADLAYNINTNVENIGARRLYTIMEKVFEEISFSADEH 423

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             + + I ++ V+  + D     D+  +IL
Sbjct: 424 SGEFIKITSDNVKEAVKDIEENRDISRYIL 453


>gi|331092892|ref|ZP_04586548.2| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020939|gb|EGI00996.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 396

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/399 (52%), Positives = 285/399 (71%), Gaps = 14/399 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIV ELDR+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVHELDRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE    +VR 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120

Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +A   AE+RILDAL+            ++  SNTR++FRK+LR+G++ DKEI++E+    
Sbjct: 121 RAEDAAEDRILDALLPPARAGFNEDQAQSNDSNTRQLFRKRLREGQLDDKEIELEI--NE 178

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   +   P G       L  LF+  MG G+ K  ++ V+     +  +E+ RL++ + +
Sbjct: 179 AVGVDISAPPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNEEEL 237

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +++ VE +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + T
Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKT 297

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+  DF  IL++  ++L  QY+EL+
Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRELL 357

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           KTEG+ ++F  + I  LA++A  +N    +IGARRL T+
Sbjct: 358 KTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTL 396


>gi|308810919|ref|XP_003082768.1| heat shock protein HslU (ISS) [Ostreococcus tauri]
 gi|116061237|emb|CAL56625.1| heat shock protein HslU (ISS) [Ostreococcus tauri]
          Length = 944

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 196/424 (46%), Positives = 280/424 (66%), Gaps = 13/424 (3%)

Query: 26  AKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           AKRA A+ALRNRWRR ++ + +R+E+ PKNIL++GPTG GKT I+RRLA++  +PF+KVE
Sbjct: 522 AKRACAVALRNRWRRHRIESPMREEIAPKNILMIGPTGCGKTEIARRLAKITDSPFVKVE 581

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATS 145
            TKFTE+G+ GR+V+QIIRDLVD  I + ++  R +  +      E +ILD + G+ A  
Sbjct: 582 ATKFTEVGFHGRDVDQIIRDLVDNGIALTKQKMRAKFEKYVEELIENKILDFICGEGAND 641

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR- 204
            TRE FR   RDG + D+ I++++ D +      D P G  + I  L     K+ G+ + 
Sbjct: 642 ETREAFRSLYRDGTLDDRMIEVDLPDNAGQGMKID-PSGGPIPIHELVIKVDKLFGNRKS 700

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNG 263
             K +M+V +C P +   E D L+  +T+ +++I  VEN GIVF+DE DKIV+     +G
Sbjct: 701 TTKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITSVENDGIVFIDEIDKIVSSSDYRHG 760

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
              S EGVQRDLLP++EGS VSTK+G++NTDHILF+ SGAFH ++P+D+L E+QGR P+R
Sbjct: 761 ADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFVCSGAFHSAKPSDMLAELQGRLPIR 820

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V LK L++ D   ILT+ E N+I Q K LMKTEGI L FT ++I+ +A +A  +N TV +
Sbjct: 821 VELKGLSEHDLYRILTEPEMNMIAQQKALMKTEGIDLVFTNEAIEHIAKLAHKVNKTVEN 880

Query: 384 IGARRLQTVMERVLEDISFSASDLQEK----------TVVIDAEYVRLHIGDFPSETDMY 433
           IGARRL TV+ER++E++SFSA +   K           V ID + V   +G    + D+ 
Sbjct: 881 IGARRLHTVLERIVEELSFSAPEKYTKFIADGGAGELVVTIDVKDVDEALGSMLKKDDLS 940

Query: 434 HFIL 437
            F+L
Sbjct: 941 RFVL 944


>gi|297520348|ref|ZP_06938734.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli
           OP50]
          Length = 392

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 195/394 (49%), Positives = 274/394 (69%), Gaps = 13/394 (3%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           GQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVGKT I+RRLA+LA APF
Sbjct: 1   GQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 60

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK 141
           IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +A   AEERILD L+  
Sbjct: 61  IKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPP 120

Query: 142 TATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
              +             R+ FRKKLR+G++ DKEI+I++A     +     PG   +   
Sbjct: 121 AKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEM-TS 179

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + +D+I  VE +GIVF+D
Sbjct: 180 QLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFID 238

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           E DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TDHILFIASGAF +++P+
Sbjct: 239 EIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPS 298

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  I  +
Sbjct: 299 DLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRI 358

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           A+ A  +N +  +IGARRL TV+ER++E+IS+ A
Sbjct: 359 AEAAWQVNESTENIGARRLHTVLERLMEEISYDA 392


>gi|282927596|ref|ZP_06335212.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A10102]
 gi|282590599|gb|EFB95676.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A10102]
          Length = 467

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VEAARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|188586011|ref|YP_001917556.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229486077|sp|B2A337|HSLU_NATTJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|179350698|gb|ACB84968.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 448

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 212/446 (47%), Positives = 311/446 (69%), Gaps = 14/446 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P+EIV  LD+YIIGQ  AKR++AIA+RNR+RRQ+L  +L++E++PKNIL++GPTG
Sbjct: 5   TEELTPQEIVERLDKYIIGQNKAKRSMAIAIRNRYRRQKLEEELKEEVIPKNILMIGPTG 64

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRLA+L  APFIK+EVTKFTE+GYVGRNVE +++DLV  +I +V E + +EV 
Sbjct: 65  VGKTEIARRLAKLIKAPFIKIEVTKFTEVGYVGRNVESMVKDLVAESIQLVEEEKHEEVS 124

Query: 124 EQASINAEERILDALVGKTATSNT----------REVFRKKLRDGEISDKEIDIEVADTS 173
           +QA   AE RI+D L+ +  +S+           R   +++L  G + D+ + +++    
Sbjct: 125 KQARKQAENRIIDLLLSEKKSSSKGEQETDLRTRRREIKEQLFKGLLEDEYVTVKLEKEP 184

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           +   N        +G+ N  ELF K++    + K +M+V++    L R E+D+LI+ D V
Sbjct: 185 AQDDNLMGEQFEEMGV-NFKELFGKILPKESEHK-KMTVKEARKVLTRQEADKLINKDQV 242

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           ++++I+  ENYGI+FLDEFDKI A       G  VSREGVQRD+LP+VEGS+V+T+YG +
Sbjct: 243 NQEAIERAENYGIIFLDEFDKIAASSGKQSGGQDVSREGVQRDILPIVEGSTVNTRYGRV 302

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHI+FI +GAFH S+PADL+PE+QGRFP+RV L SL K DF  ILT+  + L+ QYK 
Sbjct: 303 KTDHIMFIGAGAFHDSKPADLIPELQGRFPIRVELDSLTKDDFYRILTEPSNALLEQYKA 362

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++TE + ++FTED+I+ LA++   +N    DIGARRL T++E +LE++SF A +++ + 
Sbjct: 363 LLRTEEVKVNFTEDAIEELANMCEYVNENTEDIGARRLHTILETLLEELSFYAPEMKGQE 422

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V I++ YV+  + D  +E D   FIL
Sbjct: 423 VEINSNYVKDQLQDIVTEKDSSRFIL 448


>gi|21282866|ref|NP_645954.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486093|ref|YP_043314.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651823|ref|YP_186129.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160912|ref|YP_493844.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194962|ref|YP_499762.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267744|ref|YP_001246687.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393802|ref|YP_001316477.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221376|ref|YP_001332198.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|161509420|ref|YP_001575079.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142044|ref|ZP_03566537.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253315610|ref|ZP_04838823.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|257795690|ref|ZP_05644669.1| heat shock protein HslVU [Staphylococcus aureus A9781]
 gi|258415914|ref|ZP_05682184.1| heat shock protein HslVU [Staphylococcus aureus A9763]
 gi|258421676|ref|ZP_05684600.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9719]
 gi|258423905|ref|ZP_05686790.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9635]
 gi|258444592|ref|ZP_05692921.1| heat shock protein HslVU [Staphylococcus aureus A8115]
 gi|258447575|ref|ZP_05695719.1| heat shock protein HslVU [Staphylococcus aureus A6300]
 gi|258449417|ref|ZP_05697520.1| heat shock protein HslVU [Staphylococcus aureus A6224]
 gi|258452553|ref|ZP_05700559.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A5948]
 gi|258454796|ref|ZP_05702760.1| heat shock protein HslVU [Staphylococcus aureus A5937]
 gi|262048148|ref|ZP_06021035.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262051316|ref|ZP_06023539.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           930918-3]
 gi|269202870|ref|YP_003282139.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282892742|ref|ZP_06300977.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A8117]
 gi|282916514|ref|ZP_06324272.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus D139]
 gi|282920498|ref|ZP_06328219.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9765]
 gi|283770318|ref|ZP_06343210.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024247|ref|ZP_06378645.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848249|ref|ZP_06788996.1| heat shock protein HslVU [Staphylococcus aureus A9754]
 gi|295406190|ref|ZP_06815997.1| heat shock protein HslVU [Staphylococcus aureus A8819]
 gi|296274812|ref|ZP_06857319.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297244418|ref|ZP_06928301.1| heat shock protein HslVU [Staphylococcus aureus A8796]
 gi|23821703|sp|Q8NWZ7|HSLU_STAAW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|56748978|sp|Q6G9V9|HSLU_STAAS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286700|sp|Q5HGH8|HSLU_STAAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123003474|sp|Q2FZ28|HSLU_STAA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|123763305|sp|Q2FHI4|HSLU_STAA3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|172048864|sp|A6QGF4|HSLU_STAAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043923|sp|A6U172|HSLU_STAA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043924|sp|A5ISD8|HSLU_STAA9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|189043925|sp|A8Z3T4|HSLU_STAAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|21204305|dbj|BAB95002.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus MW2]
 gi|49244536|emb|CAG42965.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57286009|gb|AAW38103.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126886|gb|ABD21400.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202520|gb|ABD30330.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740813|gb|ABQ49111.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946254|gb|ABR52190.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374176|dbj|BAF67436.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368229|gb|ABX29200.1| T01 family HslU component of HsIUV peptidase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257789662|gb|EEV28002.1| heat shock protein HslVU [Staphylococcus aureus A9781]
 gi|257839250|gb|EEV63724.1| heat shock protein HslVU [Staphylococcus aureus A9763]
 gi|257842362|gb|EEV66787.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9719]
 gi|257845934|gb|EEV69963.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9635]
 gi|257850085|gb|EEV74038.1| heat shock protein HslVU [Staphylococcus aureus A8115]
 gi|257853766|gb|EEV76725.1| heat shock protein HslVU [Staphylococcus aureus A6300]
 gi|257857405|gb|EEV80303.1| heat shock protein HslVU [Staphylococcus aureus A6224]
 gi|257859771|gb|EEV82613.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A5948]
 gi|257863179|gb|EEV85943.1| heat shock protein HslVU [Staphylococcus aureus A5937]
 gi|259160691|gb|EEW45712.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           930918-3]
 gi|259163714|gb|EEW48269.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262075160|gb|ACY11133.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269940745|emb|CBI49127.1| putative ATP-dependent protease ATP-bindingsubunit [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319001|gb|EFB49353.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus D139]
 gi|282594160|gb|EFB99147.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A9765]
 gi|282764739|gb|EFC04864.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus A8117]
 gi|283460465|gb|EFC07555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470469|emb|CAQ49680.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816936|gb|ADC37423.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus 04-02981]
 gi|294825049|gb|EFG41471.1| heat shock protein HslVU [Staphylococcus aureus A9754]
 gi|294968778|gb|EFG44800.1| heat shock protein HslVU [Staphylococcus aureus A8819]
 gi|297178448|gb|EFH37694.1| heat shock protein HslVU [Staphylococcus aureus A8796]
 gi|298694546|gb|ADI97768.1| ATP-dependent protease ATP-binding subunit of heat shock protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332860|gb|ADL23053.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312829648|emb|CBX34490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131047|gb|EFT87031.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198494|gb|EFU28823.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|329313924|gb|AEB88337.1| ATP-dependent protease ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727195|gb|EGG63651.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727822|gb|EGG64273.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 467

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|258434832|ref|ZP_05688906.1| heat shock protein HslVU [Staphylococcus aureus A9299]
 gi|257849193|gb|EEV73175.1| heat shock protein HslVU [Staphylococcus aureus A9299]
          Length = 467

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADIYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|253733508|ref|ZP_04867673.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|300912181|ref|ZP_07129624.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381182|ref|ZP_07363835.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253728562|gb|EES97291.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|300886427|gb|EFK81629.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302751077|gb|ADL65254.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340165|gb|EFM06106.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|320140929|gb|EFW32776.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144355|gb|EFW36121.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441032|gb|EGA98739.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus O11]
 gi|323443901|gb|EGB01512.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus O46]
          Length = 470

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 244

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 245 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 304

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 305 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 364

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 365 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 424

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 425 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|329733679|gb|EGG70007.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 467

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMINQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|225621070|ref|YP_002722328.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225215890|gb|ACN84624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 453

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 309/450 (68%), Gaps = 16/450 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR+IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP +LRDE+ PKNI+L+GP
Sbjct: 6   KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPDELRDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI  ++ +   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFDLKTAMMKE 125

Query: 122 VREQASI--------------NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           V ++A+                 E     +        N +E  +K++++G+  +  ++I
Sbjct: 126 VEKEATEIALDKLAKLLLPSVKKENDENISEEEAEKKKNAKEQIKKRIQNGDFDESYVEI 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +++  ++ +    IPG        +  +   +M + + K  R+ V++    L+ + S+ L
Sbjct: 186 KISSGNNRMFGI-IPGMGFEESDMIQSMVGSIMPTNK-KHKRLRVKEAKKYLINEASESL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           IDMD +  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+T+
Sbjct: 244 IDMDKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNTR 303

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ +  
Sbjct: 304 YGPVKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAITK 363

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL+KTEG+ ++F E+++ A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + 
Sbjct: 364 QYQELLKTEGVTIEFEEEALSAIADIAYNINTNVENIGARRLYTIMEKVFEEISFSADEH 423

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + + I+A+ ++  + D     D+  +IL
Sbjct: 424 KGEFIKINADNIKESMKDIEDNRDISRYIL 453


>gi|319401456|gb|EFV89666.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           epidermidis FRI909]
          Length = 467

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/467 (39%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKSLVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 127 ATKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L  G++ ++++ I+V    + +               + ++ +++M   +  +  +
Sbjct: 187 IKKQLEQGKLENEKVRIKVEQDPASMGMLGTNQNQ-----QIQDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +IGARRL 
Sbjct: 361 VEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|269836345|ref|YP_003318573.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785608|gb|ACZ37751.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter
           thermophilus DSM 20745]
          Length = 485

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 206/464 (44%), Positives = 290/464 (62%), Gaps = 33/464 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR+IV  L+RYI+GQ  AKRAVAIALRNRWRRQ LP  LR E+MPKNIL++GPTGVGK
Sbjct: 22  MTPRQIVEALNRYIVGQDQAKRAVAIALRNRWRRQHLPEGLRQEVMPKNILMIGPTGVGK 81

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A +A APF+KVE TKFTE+GYVGR+VE I+RDLV+V+I ++   R + VRE+A
Sbjct: 82  TEIARRVATIADAPFLKVEATKFTEVGYVGRDVETIVRDLVEVSIGMLHGQRLEAVREEA 141

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE---------------------- 164
           S  A +R+ D L+ + A +              I D E                      
Sbjct: 142 SSAAIQRLADLLIEQRAANRRGRRKETPREAEAIQDPEQRRRHEANVRRRLARQRARMLD 201

Query: 165 ---------IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQ 213
                      +E+       +   +   A +    L E FS+++     R++  ++SV+
Sbjct: 202 LLQKEALEDETVELETDQEFDAIIPLEFAAGMSPEELHETFSELLEGFAPRRRSRKVSVR 261

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L + E++RL+D D+V  ++++  E +GI+F+DE DK++  +   G  VS EGVQR
Sbjct: 262 EARQILTQQEANRLVDFDSVVEEAVRRAEEHGIIFIDEIDKLINPNGDYGPDVSGEGVQR 321

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           DLLP+VEGS V+T+YG I TDHILFIA+G+F   RP+DL+PE+QGRFP+RV L  L++ D
Sbjct: 322 DLLPIVEGSVVNTRYGPIKTDHILFIAAGSFQTVRPSDLIPELQGRFPIRVELDHLSEDD 381

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              ILT  ++ L  QY+ L+  E + L FTED +  +A +A  +N+   DIGARRL T++
Sbjct: 382 LFAILTQPDNALTRQYQALLAAEDVELVFTEDGLREIARIAAEVNARTEDIGARRLHTIV 441

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ERVLEDISF A D + + VVID +YV   + D  ++ D+  FIL
Sbjct: 442 ERVLEDISFEAPDRRGERVVIDRDYVLQRVEDIAADDDLSKFIL 485


>gi|15924244|ref|NP_371778.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926837|ref|NP_374370.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus N315]
 gi|156979575|ref|YP_001441834.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255006041|ref|ZP_05144642.2| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|54037322|sp|P63797|HSLU_STAAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|54041268|sp|P63796|HSLU_STAAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|166221613|sp|A7X1N1|HSLU_STAA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|13701054|dbj|BAB42349.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus N315]
 gi|14247024|dbj|BAB57416.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721710|dbj|BAF78127.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu3]
          Length = 467

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|82750855|ref|YP_416596.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus RF122]
 gi|123549064|sp|Q2YXL4|HSLU_STAAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|82656386|emb|CAI80805.1| ATP-dependent protease ATP-binding subunit of heat shock protein
           [Staphylococcus aureus RF122]
          Length = 467

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPLRVELDSLSV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|242373545|ref|ZP_04819119.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348908|gb|EES40510.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 467

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/467 (39%), Positives = 297/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A   A ++++  LV                                           R  
Sbjct: 127 AISKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L +G++  +++ I+V    + +          +      ++ +++M   +  +  +
Sbjct: 187 IKKQLDEGKLEKEKVRIKVEQDPAAMGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +LI QY+ L++TE + ++F+E+++  LA++A  +N    +IGARRL 
Sbjct: 361 VDDFVRILTEPKLSLIKQYEALLQTEEVTVNFSEEAVKRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467


>gi|27467848|ref|NP_764485.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866720|ref|YP_188402.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           epidermidis RP62A]
 gi|242242536|ref|ZP_04796981.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251810685|ref|ZP_04825158.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876314|ref|ZP_06285181.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis SK135]
 gi|32129624|sp|Q8CPH0|HSLU_STAES RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|62286705|sp|Q5HPT8|HSLU_STAEQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|27315393|gb|AAO04527.1|AE016747_24 heat shock protein HslU [Staphylococcus epidermidis ATCC 12228]
 gi|57637378|gb|AAW54166.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           epidermidis RP62A]
 gi|242233963|gb|EES36275.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251805845|gb|EES58502.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295339|gb|EFA87866.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis SK135]
 gi|329724338|gb|EGG60850.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736195|gb|EGG72467.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU028]
          Length = 467

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/467 (39%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKKSLVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 127 ATKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L  G++ ++++ I+V    + +               + ++ +++M   +  +  +
Sbjct: 187 IKKQLEQGKLENEKVRIKVEQDPASMGMLGTNQNQ-----QIQDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +IGARRL 
Sbjct: 361 VEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|315038214|ref|YP_004031782.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1112]
 gi|325956669|ref|YP_004292081.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus 30SC]
 gi|312276347|gb|ADQ58987.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1112]
 gi|325333234|gb|ADZ07142.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus 30SC]
 gi|327183492|gb|AEA31939.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           amylovorus GRL 1118]
          Length = 465

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/466 (40%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLNKEMQKEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + + + V+ QA+
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFERVKPQAT 124

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
             A ++++  L                                          N R    
Sbjct: 125 KEANKQLVRLLAPGVKRENRESQMQQMQDMMSMLMGGNNQNNNDEEEVTDEVRNQRMDVA 184

Query: 153 KKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  + 
Sbjct: 185 EKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTLP 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREGV
Sbjct: 240 VREAREVLIQEESRKMVDYDTIYQSAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K
Sbjct: 300 QRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTK 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL T
Sbjct: 360 DDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFSVNQGTDNIGARRLST 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ +   D++   + I   YV   +GD  +  D+  FIL
Sbjct: 420 ILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIITNKDLTKFIL 465


>gi|297624297|ref|YP_003705731.1| heat shock protein HslVU, ATPase subunit HslU [Truepera
           radiovictrix DSM 17093]
 gi|297165477|gb|ADI15188.1| heat shock protein HslVU, ATPase subunit HslU [Truepera
           radiovictrix DSM 17093]
          Length = 426

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/433 (48%), Positives = 293/433 (67%), Gaps = 8/433 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD+YIIGQ  AKR+VA+ALRN +RR+QL  +++ E+ PKNIL++GPTGV
Sbjct: 2   LNLTPLEIVEELDKYIIGQHKAKRSVAVALRNHFRRRQLAGEIQREVTPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APF+KVE TKFTE GYVGR+VE ++RDLV  +  +V+E + + V E
Sbjct: 62  GKTEIARRLARLARAPFVKVEATKFTETGYVGRDVESMVRDLVQASYVMVQEEQLERVSE 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+ NAEE +LDAL+    T   R   R+ L  G++ D+ I+IEV D             
Sbjct: 122 RAAKNAEEHLLDALLP-GGTEEGRAKMRELLEAGKLEDRSIEIEVKDERPQQMMMPG--- 177

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                LNL E+ S ++   R ++     ++    L  +E+++LID D V R++I   EN 
Sbjct: 178 MEEMGLNLQEMMSNLLPKRRVRRKTTV-REAREALRGEEAEKLIDHDEVSREAISRAENS 236

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GI+F+DE DK+   D+ +G  VS EGVQRDLLP+VEG+ V+T+YG + TDH+LFIA+GAF
Sbjct: 237 GIIFIDEIDKVTGSDNTSGPDVSGEGVQRDLLPIVEGTQVNTRYGQVKTDHVLFIAAGAF 296

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
             S+P+DL+PE+QGRFP+RV L+ L+ SDF+LILT  + +L  QY EL+K +G  L F +
Sbjct: 297 TASKPSDLIPELQGRFPIRVELEELSASDFQLILTKPQYSLTKQYTELLKVDGTRLRFDD 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
             I+A+A+ +  +N+ V DIGARRL TV+E VLED+SF+        VVID  YV   + 
Sbjct: 357 SGIEAIAEYSARVNADVEDIGARRLHTVLETVLEDVSFA---TNLGDVVIDRAYVEKKLE 413

Query: 425 DFPSETDMYHFIL 437
           D  S+ D+  ++L
Sbjct: 414 DIASDEDLSRYVL 426


>gi|189501893|ref|YP_001957610.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus
           Amoebophilus asiaticus 5a2]
 gi|189497334|gb|ACE05881.1| hypothetical protein Aasi_0471 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 463

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/457 (43%), Positives = 300/457 (65%), Gaps = 27/457 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ LD+YI+GQQ AKR VAIALRNRWRR  + +D++ ++ P NIL++G TGVGK
Sbjct: 8   LTPREIVASLDKYIVGQQSAKRNVAIALRNRWRRMHVQSDIKADITPNNILMIGATGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+++V+ +R +EVR++A
Sbjct: 68  TEIARRLAQVADAPFVKVEASKFTEVGYVGRDVEGMVRDLVEQAVSMVKAAREEEVRDKA 127

Query: 127 SINAEERILDALVGKTA----------------------TSNTREVFRKKLRDGEISDKE 164
           +   E+ ILDA++   +                      +  TRE FR+K+R+G++ +++
Sbjct: 128 TQQVEDIILDAVIPPVSRMTGEETVENNLNSLEENDFNLSEQTRERFRQKIRNGDLDERK 187

Query: 165 IDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           I+I + + ++  IS           + NL ++ S  M   + K  ++++ +    L+ +E
Sbjct: 188 IEIAINSSSTMGISMIGGGMMDESALSNLQDMISN-MIPKKPKTRKVTIAEAKQLLLPEE 246

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGS 282
            ++LIDMD+V  ++++  +  GI+F+DE DKI      G+G  VSREGVQRDLLP+VEGS
Sbjct: 247 INKLIDMDSVKEEALEKAKYNGIIFIDEMDKIAGSSYRGSGPDVSREGVQRDLLPIVEGS 306

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V+TKYG I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF  IL + +
Sbjct: 307 TVNTKYGVITTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELDSLSKEDFCCILKEPK 366

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QY  L + E + L F E +I+ +A+ A  LN  + +IGARRL TVM  +L +  F
Sbjct: 367 NALTKQYVALFEAENVKLTFEEKAIEEIAEKAFTLNQQMENIGARRLHTVMSHLLNEYLF 426

Query: 403 SASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              D    E+ + I  E V   + +     ++  +IL
Sbjct: 427 DVPDKIEAEQEIKITKELVNEKLSELVKNKNLNEYIL 463


>gi|168067862|ref|XP_001785823.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662525|gb|EDQ49367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 593

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/469 (44%), Positives = 296/469 (63%), Gaps = 39/469 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQQ+AKRAVA+ALRNRWRR ++P   R+E++PKNIL++GPTG GK
Sbjct: 126 LTPVKVVEMLDRYIVGQQEAKRAVAVALRNRWRRHRIPEAFREEIVPKNILMIGPTGCGK 185

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 186 TEIARRLAKIAYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIALQRQKMRAKLVKEV 245

Query: 127 SINAEERILDALV----------------------------------GKTATSNTREVFR 152
               E R+LD  +                                           E FR
Sbjct: 246 ENVVEARLLDIFISRQLPPVEVSPIETWPPALNIGQVGSASRVEGESPVPEARVDYEAFR 305

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIR 209
           +  RDG + +++I +++ D  S +   +I G +  G+  L        K + S R +++ 
Sbjct: 306 QLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVFRLPQMEKFLKSQRMERME 364

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSR 268
           +++    P L   E ++ +++D + +D+I + E+ GIVF+DE DKIV       G   S 
Sbjct: 365 ITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDEIDKIVTNHETRYGADASS 424

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRDLLP++EGS VSTKYG++NTDHILFI SGAFH  +P+D+L E+QGR P+RV LK 
Sbjct: 425 EGVQRDLLPIIEGSVVSTKYGNVNTDHILFICSGAFHSCKPSDMLAELQGRLPIRVELKG 484

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + D   ILT+ E+N+I Q + LMKTE I L FT+D+I+ LA VA  +N +V +IGARR
Sbjct: 485 LGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEELAKVAAEVNRSVDNIGARR 544

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L TV+ERV+EDISF A +   +T  ID E V+  +GDF  + D+  F+L
Sbjct: 545 LHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKADLSRFVL 593


>gi|297208100|ref|ZP_06924531.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|296887343|gb|EFH26245.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus ATCC 51811]
          Length = 470

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +    E+++  LV                                           R   
Sbjct: 131 TAKVNEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 244

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 245 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 304

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 305 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 364

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 365 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 424

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 425 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|322434047|ref|YP_004216259.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX9]
 gi|321161774|gb|ADW67479.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX9]
          Length = 545

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 216/529 (40%), Positives = 315/529 (59%), Gaps = 98/529 (18%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y++GQ  AKRAVAIALRNR RRQ+LP DL D++MPKNI+++GPTGVG
Sbjct: 18  ELTPREIVAELDKYVVGQGAAKRAVAIALRNRMRRQKLPPDLADDIMPKNIIMIGPTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+KVE +KFTE+GYVGR+VE I+RDLV++AI++VRE + ++V ++
Sbjct: 78  KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIVRDLVEIAIDLVREEKLEDVADK 137

Query: 126 ASINAEER----------------------------------------------ILDALV 139
           A ++AE+R                                              + D   
Sbjct: 138 AELHAEDRLLDLLLPPTPAAATAANAAAATEVAGTNVIQLPMQMDTESPEYVAPVADVGP 197

Query: 140 GKTATSN--TREVFRKKLRDG----EISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
            +       + E  R+KLR      ++ ++ ++I+V D +     F    G     ++L 
Sbjct: 198 SEDKKHEPTSYERTREKLRQQFREGKLDERVVEIDVRDRNQPSFEFIAAPGQDESDMSLK 257

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
           ++   +    R KK +M V + +  L+++E  RL+DMD V + +++ VE  GIVFLDE D
Sbjct: 258 DVLPGLF-GQRTKKRKMKVAEAFDYLVQEEEGRLVDMDQVTKLAVERVEESGIVFLDEID 316

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313
           KI  R+ G+G  VSREGVQRD+LP+VEG++V+TKYG ++TDHILFIA+GAFHVS+P+DL+
Sbjct: 317 KIAGREGGHGPDVSREGVQRDILPIVEGTTVNTKYGMVSTDHILFIAAGAFHVSKPSDLI 376

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+QGRFP+RV L+SL   DF  ILT+ +S+L+ Q   L++TEG+ L+FT +++  +A+ 
Sbjct: 377 PELQGRFPIRVELQSLTVGDFVRILTEPKSSLVKQSTALLETEGLKLEFTPEALAEMAEF 436

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-------------------------- 407
           A  +N +  +IGARRL T+MERVL++ISF A DL                          
Sbjct: 437 AFKVNESTENIGARRLHTIMERVLDEISFQAPDLMKNAKGESSEEGVVGQVGHSAPLGGE 496

Query: 408 -------------------QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                               EK +V+D EYVR  +       D+  +IL
Sbjct: 497 VRPDSPPLPVIERRKEDGTVEKVIVVDPEYVRQQVAGIVKNQDLSRYIL 545


>gi|49483417|ref|YP_040641.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|282903809|ref|ZP_06311697.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905572|ref|ZP_06313427.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908547|ref|ZP_06316377.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282918953|ref|ZP_06326688.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C427]
 gi|283957997|ref|ZP_06375448.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295427741|ref|ZP_06820373.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|56749032|sp|Q6GHI1|HSLU_STAAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|49241546|emb|CAG40232.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|282316763|gb|EFB47137.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C427]
 gi|282327609|gb|EFB57892.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330864|gb|EFB60378.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595427|gb|EFC00391.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790146|gb|EFC28963.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128099|gb|EFG57733.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315194141|gb|EFU24534.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 467

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL  
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLAV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|45657473|ref|YP_001559.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|59797803|sp|Q72RY7|HSLU_LEPIC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|45600712|gb|AAS70196.1| ATP-dependent hsl protease [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 479

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 200/464 (43%), Positives = 301/464 (64%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV++LD +II Q++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVG
Sbjct: 17  ELTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVG 76

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E 
Sbjct: 77  KTEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEET 136

Query: 126 ASINAEERILDALVGKTATS---------------------------NTREVFRKKLRDG 158
           A   AEE +LD L+     +                            TRE  RKKL+ G
Sbjct: 137 AKQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTG 196

Query: 159 EISDKEIDIEVADT---SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           ++ D+E+++++ +       +      G        L  +   ++   + KK ++ + + 
Sbjct: 197 KLDDQEVELDLPNPSVSQVPMLQVFGAGNLDDLDNQLQNVLGDIL-PKKNKKRKLKIPEA 255

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L   E+++L+D D V R++++ VE  GI+FLDE DKI  R+  +G  VSREGVQRDL
Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF 
Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER
Sbjct: 376 KILTAPRSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435

Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF   DL E  + V ID +YV   +       D+  +IL
Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479


>gi|293366782|ref|ZP_06613458.1| heat shock protein HslVU [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319083|gb|EFE59453.1| heat shock protein HslVU [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 470

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/467 (39%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 10  KLTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++
Sbjct: 70  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDE 129

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 130 ATKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSE 189

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L  G++ ++++ I+V    + +               + ++ +++M   +  +  +
Sbjct: 190 IKKQLEQGKLENEKVRIKVEQDPASMGMLGTNQNQ-----QIQDMMNQLMPKKKV-EREV 243

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 244 SVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 303

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 304 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 363

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +IGARRL 
Sbjct: 364 VEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLH 423

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 424 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|297591301|ref|ZP_06949939.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576187|gb|EFH94903.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 470

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 244

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 245 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 304

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL  
Sbjct: 305 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLAV 364

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 365 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 424

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 425 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|329736606|gb|EGG72872.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU045]
          Length = 467

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 185/467 (39%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 127 ATKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L  G++ ++++ I+V    + +               + ++ +++M   +  +  +
Sbjct: 187 IKKQLEQGKLENEKVRIKVEQDPASMGMLGTNQNQ-----QIQDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           SV+     L  D +D LID +T ++ ++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 SVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  ILT+ + +L+ QY+ L++TE + ++F+ED+I  LA++A  +N    +IGARRL 
Sbjct: 361 VEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|91204118|emb|CAJ71771.1| strongly similar to ATP-dependent Hsl protease, ATP-binding subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 451

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/450 (44%), Positives = 308/450 (68%), Gaps = 21/450 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV ELD+Y+IGQ+ AKRAVAIA+RNRWRR QL  +LR+E++PKNI+++GPTGVG
Sbjct: 5   ELTPRKIVEELDKYVIGQKSAKRAVAIAIRNRWRRHQLSEELREEILPKNIIMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A +  APF+K+E +K+TE+GY GR+VE +IRD+ ++ +N+V+     +V+ +
Sbjct: 65  KTEIARRMASMVKAPFLKIEASKYTEVGYHGRDVESMIRDITEIGVNMVKAEMVKDVQGK 124

Query: 126 ASINAEERILDALVGKTATSN-----------------TREVFRKKLRDGEISDKEIDIE 168
           A   AEER+LD L+  T  ++                 TRE  RKKLRDG ++++ +++ 
Sbjct: 125 AEELAEERLLDLLLPPTPKNSEKMDKEKEVAKEDQRIKTREKLRKKLRDGALANRTVELT 184

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V + S  +  F    G     ++   +  K M   R +  +  V +    L+++E+++LI
Sbjct: 185 VHEKSYVLQGF--VTGVEDMGIDFQNMMEK-MIPPRAQVRKAPVAEAKRILIQEEAEKLI 241

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D +   +++I+  E +GI+FLDE DKI  R++  G  VSREGVQRDLLP+VEG++V+T+Y
Sbjct: 242 DKEKAIQEAIRRTEQFGIIFLDEIDKIAGRETSRGPDVSREGVQRDLLPIVEGTTVNTRY 301

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TD ILF+A+GAFHVS+P+DL+PE+QGRFP+RV L+ L K +F  ILT+ ++ L+ Q
Sbjct: 302 GIVKTDRILFVAAGAFHVSKPSDLIPELQGRFPIRVELEDLGKEEFLRILTEPKNALLKQ 361

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK L++TEGI + F +++I+ + ++AV +N    +IGARRL TV+E++LED SF A D++
Sbjct: 362 YKSLLETEGIKVHFKKEAIETITEIAVQVNKRTQNIGARRLHTVLEKLLEDASFDAPDME 421

Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             K V+ID +YV   +     + D+  +IL
Sbjct: 422 GGKEVIIDDKYVNDKLQAIVKDEDLSRYIL 451


>gi|295426270|ref|ZP_06818930.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064009|gb|EFG54957.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           amylolyticus DSM 11664]
          Length = 458

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 184/458 (40%), Positives = 286/458 (62%), Gaps = 32/458 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  L++YIIGQ +AK++VAIAL NR+RR QLP  ++ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKKIVELLNQYIIGQDEAKKSVAIALYNRYRRMQLPKQMQKDITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGRNVE ++RDL   ++ +  +   +E+R +A+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRNVESMVRDLAAKSVQMEEKKEFEEIRPEAA 124

Query: 128 INAEERILDALVGKTATS----------------------------NTREVFRKKLRDGE 159
             A + ++ ALV                                  N R    ++L  G 
Sbjct: 125 KEANKELVKALVPGIKHEHHYDSVFSFLNNLDDEEFDDEEVNDDIRNKRMTIAEQLNKGL 184

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+++ IEV +        D+ G   +   ++  + S  M   RK K  + V+     L
Sbjct: 185 LEDRDVTIEVEEKPKASPMSDMMGQMGM---DIGSMLSN-MIPKRKIKRTLPVKDARELL 240

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
           + +ES +++D D++++ +I+  +N GI+F+DE DK++A +      VSREGVQRD+LP+V
Sbjct: 241 INEESRKMVDYDSLYQRAIERAQNNGIIFIDEIDKVIAGNKKTSGEVSREGVQRDILPIV 300

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V TK+G ++TDH+LFI +GAF  S+P+DL+PE+QGRFP+RV L +L K DF  IL 
Sbjct: 301 EGSTVQTKFGPLSTDHVLFIGAGAFAESKPSDLIPELQGRFPIRVQLDALTKDDFVHILK 360

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           D E++L+ QY  LMK +GI L FT++++D +A++A  +N    +IGARRL T++E++LED
Sbjct: 361 DPENSLLKQYVALMKADGIKLIFTQEAVDRIAEIAYEVNQGTDNIGARRLSTILEKLLED 420

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +   D++   + +   YV   + D     D+  FIL
Sbjct: 421 VLYEGPDMEMGEITVTEAYVEEKLKDVIINKDLTKFIL 458


>gi|222151087|ref|YP_002560241.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120210|dbj|BAH17545.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 457

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 194/460 (42%), Positives = 300/460 (65%), Gaps = 35/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +PR+IVS LD +IIGQQDAKR VA++LRNR+RR  L  +++ E++PKNIL++GPTGVG
Sbjct: 5   NLTPRQIVSHLDEHIIGQQDAKRKVAVSLRNRYRRMALDDEIQKEVIPKNILMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L GAPF+KVE TK+TE+GYVGR+VE +IRDL +  + +++E ++ EV E+
Sbjct: 65  KTEIARRMAKLVGAPFVKVEATKYTEVGYVGRDVESMIRDLTENGVRLIKEKKKQEVLEE 124

Query: 126 ASINAEERILDALVGKTATSN----------------------------TREVFRKKLRD 157
           A  NAEER++  LV                                    R+  + +L+ 
Sbjct: 125 AKRNAEERLVKLLVPAMKKKENKAGNPFEMLFNQTIQEEEDAPDEQVKLKRKDIQAQLKA 184

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+ + I+V      ++ F    G  +    + ++FS++M   +  +  + V     
Sbjct: 185 GKLEDETVKIKVEQEFKGLNMF----GMDMQNNQMQDMFSQMMPKKKV-ERTLKVSDARE 239

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+ +E+ +LID +++H +++ + E  GIVF+DE DKI       G  VSR+GVQRD+LP
Sbjct: 240 VLIDEEATKLIDEESMHSEAVALTEQLGIVFIDEIDKIA--GGNQGPDVSRQGVQRDILP 297

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS V TKYG++NT+HILFI +GAFHVS+P+DL+PE+QGRFP+RV L  L+  DF+ I
Sbjct: 298 IVEGSVVQTKYGAVNTEHILFIGAGAFHVSKPSDLIPELQGRFPIRVELDKLSVDDFKRI 357

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + + +L+ QY+ L+ TE + ++FT+++ID LA+++  +N    +IGARRL T++E++L
Sbjct: 358 LKEPKLSLLKQYESLLATEDVTINFTDEAIDRLAEMSYEVNQETDNIGARRLHTILEKML 417

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+ F AS++    V I A+YV   +G+     ++  FIL
Sbjct: 418 EDLLFEASEMPNAHVDITAQYVDAKLGNITKNKNLSEFIL 457


>gi|24215045|ref|NP_712526.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|32129632|sp|Q8F3Q5|HSLU_LEPIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|24196095|gb|AAN49544.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 479

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/464 (43%), Positives = 301/464 (64%), Gaps = 33/464 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV++LD +II Q++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVG
Sbjct: 17  ELTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVG 76

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E 
Sbjct: 77  KTEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEET 136

Query: 126 ASINAEERILDALVGKTATS---------------------------NTREVFRKKLRDG 158
           A   AEE +LD L+     +                            TRE  RKKL+ G
Sbjct: 137 AKQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTG 196

Query: 159 EISDKEIDIEVADT---SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           ++ D+E+++++ +       +      G        L  +   ++   + KK ++ + + 
Sbjct: 197 KLDDQEVELDLPNPSVSQVPMLQVFGAGNLDDLDNQLQNVLGDIL-PKKNKKRKLKIPEA 255

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L   E+++L+D D V R++++ VE  GI+FLDE DKI  R+  +G  VSREGVQRDL
Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF 
Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER
Sbjct: 376 KILTAPCSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435

Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LE++SF   DL E  + V ID +YV   +       D+  +IL
Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479


>gi|296126031|ref|YP_003633283.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira
           murdochii DSM 12563]
 gi|296017847|gb|ADG71084.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira
           murdochii DSM 12563]
          Length = 453

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/450 (44%), Positives = 311/450 (69%), Gaps = 16/450 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           KL    +PR+IV  LD+YIIGQ +AKR+VAIALRNR+RR+ LP DL+DE+ PKNI+L+GP
Sbjct: 6   KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEDLKDEVAPKNIILIGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA+L  APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI  ++ +   E
Sbjct: 66  TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFELKTAMMKE 125

Query: 122 VREQASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDI 167
           V ++A+  A +++   L+                    N +E  +K++ +G+  +  +++
Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEENENVSEEEMEKKKNAKEQIKKRIANGDFDESYVEL 185

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++  + + +    IPG        +  +   +M   + K  R+ V++    L+ + S+ L
Sbjct: 186 KITGSQNRMFGI-IPGMGFEENDMIQSMVGSIMPQSK-KHKRLRVKEAKKHLINEASESL 243

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           IDM+ +  D++ + EN GI+FLDE DKI + +  +   V+R GVQRDLLP+VEG++V+T+
Sbjct: 244 IDMEKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNTR 303

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ +  
Sbjct: 304 YGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAITK 363

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL+KTEG+ ++F E++++A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + 
Sbjct: 364 QYQELLKTEGVTIEFEEEALEAIADMAYNINTNVENIGARRLYTIMEKVFEEISFSADEH 423

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + + + I+A+ ++  + D     D+  +IL
Sbjct: 424 KGEFIKINADNIKDAMKDIEDNRDISRYIL 453


>gi|289523579|ref|ZP_06440433.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503271|gb|EFD24435.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 470

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/463 (44%), Positives = 308/463 (66%), Gaps = 33/463 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P ++++ L+RY+IGQ  AK+AVA+ALRNR RR++LP +L  E++PKNIL+VGPTGVG
Sbjct: 10  ELTPSQVMAYLNRYVIGQTRAKKAVAVALRNRIRRKRLPKELAKEIIPKNILMVGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE +K+TE+GYVGR+VE +IR++ D+A+++V+  + +E    
Sbjct: 70  KTEIARRLAQLVDAPFVKVEASKYTEVGYVGRDVESMIREMADIAVHMVKSRKIEENSAA 129

Query: 126 ASINAEERILDALVGKTATSN------------------------------TREVFRKKL 155
           A   AEER+LDAL+     S                               TRE FRK L
Sbjct: 130 AETLAEERVLDALLPTKHKSRQPQDFMRLLLGDSTEEEEESDETERETKRTTREKFRKLL 189

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G+++D+EI+IEVA++      F   G   +G LNL E+   ++   + K+ R++V   
Sbjct: 190 REGKLNDREIEIEVAESPLSNIPFVGAGMEEMG-LNLGEMLGGIL-PKKIKRKRVTVANA 247

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRD 274
                ++E+++LIDMD V ++++  V+  GIVF+DE DKI +      G  VSREGVQRD
Sbjct: 248 LKIFQQEEAEKLIDMDAVVQEALDKVQEEGIVFIDELDKIASSGGQKYGPDVSREGVQRD 307

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           LLPLVEG++V TKYG + TDHILFI +GAFH ++P+DL+PE+QGRFP+RV L +L + + 
Sbjct: 308 LLPLVEGTTVQTKYGPVKTDHILFIGAGAFHETKPSDLIPELQGRFPIRVELDALEEEEL 367

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + E++L+ QYK L++TEGI + F + ++ A+A  A  +N  + +IGARRL T+ME
Sbjct: 368 LRILVEPENSLVKQYKALLETEGIEMIFDDGALKAIAFFAAKMNREMENIGARRLHTMME 427

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LEDISF A +L+E+ V ID  +V   + D    TD+  ++L
Sbjct: 428 QLLEDISFKAPELREREVRIDEAFVNERLADLVENTDLRRYLL 470


>gi|282910826|ref|ZP_06318629.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325431|gb|EFB55740.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus WBG10049]
          Length = 467

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL  
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLAV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|312438367|gb|ADQ77438.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 470

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 244

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 245 VETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 304

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL  
Sbjct: 305 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLAV 364

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 365 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 424

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 425 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|222823762|ref|YP_002575336.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari
           RM2100]
 gi|222538984|gb|ACM64085.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari
           RM2100]
          Length = 439

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 187/444 (42%), Positives = 296/444 (66%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV+ LD Y+IGQ++AK+ +AIALRNR+RR QL  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVNFLDDYVIGQKNAKKIIAIALRNRYRRMQLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE ++RDL + A+N+V++  +++ +E
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLANAALNLVKQEEKEKNQE 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+                N+ E  R KL+ G++ D  I++E++ +  
Sbjct: 121 KINEYIENKILEKLLPPLPKGISEEKEQEYKNSLEKMRVKLKAGDLDDSIIEVEISQS-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M V+     L ++ S++++DM+++ 
Sbjct: 179 ---VFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKVKDAKNALAQEASEKILDMESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DK+  +  + N    S+EGVQRDLLP+VEGS++ TK+G + T
Sbjct: 236 SEALRRAENEGIIFIDEIDKVAVSSSNSNRQDPSKEGVQRDLLPIVEGSTIQTKFGPLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT  +++L+ QY EL+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEDALYAILTRPKNSLLTQYIELL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L F + +I  +A +A   N  + DIGARRL TV+E++LEDISF A +   K   
Sbjct: 356 KTEKVELVFEDAAIKEIAKIASKANEEMQDIGARRLHTVVEKLLEDISFEADEYAGKVYK 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           ID   V++ +GD     D+  +IL
Sbjct: 416 IDDFKVQVKLGDIVENKDLARYIL 439


>gi|257425308|ref|ZP_05601733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427969|ref|ZP_05604367.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430602|ref|ZP_05606984.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433362|ref|ZP_05609720.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436204|ref|ZP_05612251.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914031|ref|ZP_06321818.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924076|ref|ZP_06331752.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C101]
 gi|293501063|ref|ZP_06666914.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510025|ref|ZP_06668733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526611|ref|ZP_06671296.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271765|gb|EEV03903.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274810|gb|EEV06297.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278730|gb|EEV09349.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281455|gb|EEV11592.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284486|gb|EEV14606.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M876]
 gi|282314048|gb|EFB44440.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322099|gb|EFB52423.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920683|gb|EFD97746.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096068|gb|EFE26329.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466969|gb|EFF09487.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus
           aureus subsp. aureus M809]
          Length = 467

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 292/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 8   LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 68  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 188 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 241

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 242 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 301

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL  
Sbjct: 302 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLAV 361

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 362 EDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 421

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 422 ILEKMLEDLSFEAPRMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|253731873|ref|ZP_04866038.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724283|gb|EES93012.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 470

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/466 (39%), Positives = 293/466 (62%), Gaps = 41/466 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVGK
Sbjct: 11  LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+  ++  V+++A
Sbjct: 71  TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
           +  A E+++  LV                                           R   
Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +++L +G++  +++ I+V      +          +      E+ +++M   +  +  ++
Sbjct: 191 KRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQM-----QEMMNQLMPKKKV-EREVA 244

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V+     L    +D LID ++ +++++++ E  GI+F+DE DK+   +  +G  VSR+GV
Sbjct: 245 VETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGV 304

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ 
Sbjct: 305 QRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSV 364

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  ILT+ + +LI QY+ L++TE + ++FT+++I  LA++A  +N    +IGARRL T
Sbjct: 365 EDFVRILTELKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHT 424

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+SF A  +    V I  +YV   +    +  D+  FIL
Sbjct: 425 ILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470


>gi|315636932|ref|ZP_07892156.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter
           butzleri JV22]
 gi|315478762|gb|EFU69471.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter
           butzleri JV22]
          Length = 442

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 193/444 (43%), Positives = 293/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++   L++E+MPKNIL++G TGV
Sbjct: 1   MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV   IN+V     +++++
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120

Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTS- 173
           +      ++I++ LV     S           T     KKL +G + DK+I+IE+   + 
Sbjct: 121 KIDDEVNKKIIEKLVPPLPDSASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +I +  +P   S    +L+++   +  +  K K  ++++     L    S+ L+D + +
Sbjct: 181 VEIIDSSLPFDMSSMQESLNKMLGSL--NKDKIKKEVTIKDAKILLRSVASESLLDQEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++++  EN GI+FLDE DKI +    NG   S+EGVQRDLLP+VEGSSV TK+G I T
Sbjct: 239 KIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQIKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT+T+++L+ QYK L+
Sbjct: 299 DHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + EG+ L+F +++I A A  +V  N    DIGARRL TV+E+V+EDISF A + +   VV
Sbjct: 359 EVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTKVV 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +  E V   + D     D   +IL
Sbjct: 419 VTKELVSDKLDDIVDNVDTARYIL 442


>gi|72389062|ref|XP_844826.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma brucei
           TREU927]
 gi|62176325|gb|AAX70437.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei]
 gi|70801360|gb|AAZ11267.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261328093|emb|CBH11070.1| heat shock protein HslVU, ATPase subunit HslU,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 475

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/434 (46%), Positives = 280/434 (64%), Gaps = 11/434 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPTGVG
Sbjct: 51  NMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPTGVG 110

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TKFTE+G+ GR+VE II DL   ++   +++      E 
Sbjct: 111 KTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNIMRRHEET 170

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE RIL AL G +      + FR+ LR G + D E+ +E+ +      N     G 
Sbjct: 171 ARQKAENRILKALAGVS------DGFREHLRSGALDDIEVIVELQEKKEKPKNSGTNEGV 224

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            + +   S +  +     +  K  M ++   P ++++E D+++D + V  ++++  E  G
Sbjct: 225 FISLEIPSSIGGQ---RPQTVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEALRACEEDG 281

Query: 246 IVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIASGA 303
           IV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK    I TD ILFI SGA
Sbjct: 282 IVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKGNVQIKTDKILFICSGA 341

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH  +P+D+L E+QGR P+RV LK L K DF  I+T+   NLI Q+  +MKTEG+ L FT
Sbjct: 342 FHSVKPSDMLAELQGRLPIRVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTEGVDLVFT 401

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D++  +A +A ++NSTV +IGARRL T+ E+V+E++SF   D + +T VIDA YVR  +
Sbjct: 402 DDALWEIASIAAHINSTVQNIGARRLITITEKVVEEVSFDGPDRKGETFVIDAAYVRNSV 461

Query: 424 GDFPSETDMYHFIL 437
                + D+  FIL
Sbjct: 462 ESMMKKVDIKKFIL 475


>gi|257459459|ref|ZP_05624568.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           gracilis RM3268]
 gi|257442884|gb|EEV18018.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           gracilis RM3268]
          Length = 438

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/443 (42%), Positives = 295/443 (66%), Gaps = 17/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P++IV +LD YIIGQ  AKR +A+ALRNR+RR  L  ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKQIVEKLDEYIIGQNSAKRTIAVALRNRYRRMALEDEMKNEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+VR    ++ +++ 
Sbjct: 61  TEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVRGEEFEKNKDKI 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               + +IL+ ++                 + E    KL  G++ D  I+IEV++ +   
Sbjct: 121 DDYIKRKILEKVLPPLPRGASEEKIADYEKSYEKMAAKLERGDLDDLSIEIEVSENA--- 177

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHR 235
              +        + N+ E F KV+G   +K  + M V+     L  + S++++DM+++  
Sbjct: 178 --LESNPNLPPEMANMQESFIKVIGISTRKSKKEMKVKDAKVALKSEASEKVLDMESIKA 235

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           ++++  +N GI+F+DE DK+      +G    S+EGVQRDLLP+VEGSSVSTK+G+I+TD
Sbjct: 236 EAVRRAQNEGIIFIDEIDKVAVSSGNSGRQDPSKEGVQRDLLPIVEGSSVSTKFGNIDTD 295

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++L+ QY  L+K
Sbjct: 296 HILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEAALCEILTKPKNSLLKQYSALLK 355

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           TEG+ L+F+ED + A+A  A + N  V DIGARRL T+ME+VLEDISF A   + + +V+
Sbjct: 356 TEGVELEFSEDGVKAIAKFAASTNEKVEDIGARRLHTIMEKVLEDISFEADKFKGQKIVV 415

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D + V   +    S+ D+  +IL
Sbjct: 416 DEKLVSEKLAGIASDEDLAKYIL 438


>gi|157737218|ref|YP_001489901.1| ATP-dependent protease ATP-binding subunit HslU [Arcobacter
           butzleri RM4018]
 gi|157699072|gb|ABV67232.1| heat shock protein HslVU, ATP-dependent protease subunit HslU
           [Arcobacter butzleri RM4018]
          Length = 442

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 193/444 (43%), Positives = 293/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++   L++E+MPKNIL++G TGV
Sbjct: 1   MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV   IN+V     +++++
Sbjct: 61  GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120

Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTS- 173
           +      ++I++ LV     S           T     KKL +G + DK+I+IE+   + 
Sbjct: 121 KIDDEVNKKIIEKLVPPLPESASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +I +  +P   S    +L+++   +  +  K K  ++++     L    S+ L+D + +
Sbjct: 181 VEIIDSSLPFDMSSMQESLNKMLGSL--NKDKIKKEVTIKDAKILLRSVASESLLDQEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             ++++  EN GI+FLDE DKI +    NG   S+EGVQRDLLP+VEGSSV TK+G I T
Sbjct: 239 KIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQIKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT+T+++L+ QYK L+
Sbjct: 299 DHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + EG+ L+F +++I A A  +V  N    DIGARRL TV+E+V+EDISF A + +   VV
Sbjct: 359 EVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTKVV 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +  E V   + D     D   +IL
Sbjct: 419 VTKELVSDKLDDIVDNVDTARYIL 442


>gi|262195485|ref|YP_003266694.1| heat shock protein HslVU, ATPase HslU [Haliangium ochraceum DSM
           14365]
 gi|262078832|gb|ACY14801.1| heat shock protein HslVU, ATPase subunit HslU [Haliangium ochraceum
           DSM 14365]
          Length = 456

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 216/458 (47%), Positives = 308/458 (67%), Gaps = 23/458 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P  IV+ELDRYI+GQ+ AKRAVA+ALRNRWRRQQ+  +L+DE+ PKNI+++G
Sbjct: 1   MKTALELTPAAIVAELDRYIVGQKAAKRAVAVALRNRWRRQQVEGELKDEIAPKNIIMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA+LA APF+KVE +KFTE+GYVGR+V+ I+RDL++V+I +VR+    
Sbjct: 61  PTGVGKTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVDSIVRDLMEVSIKLVRDEESV 120

Query: 121 EVREQASINAEERILDALV-------------------GKTATSNTREVFRKKLRDGEIS 161
           +VR +A   AEER+LD L+                    + A + TRE  R  LRDG++ 
Sbjct: 121 KVRPKAREAAEERLLDLLLPPRPRAFSDRPPGPDGQSGPQPADTATREKLRTLLRDGKLE 180

Query: 162 DKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           ++E+D+E+  D S  +  F   G   +G+  L ++   +    + K  +M + +    L 
Sbjct: 181 EREVDVEITEDNSPFLQIFGGAGVEEMGLSGLRDMLGSI--GKKTKSRKMKIPQALEALT 238

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLV 279
             E D+LID +T+ R+++   EN GIVFLDE DKI   +D+  G  VSREGVQRDLLP+V
Sbjct: 239 DQEVDKLIDAETLTREAVTRAENAGIVFLDEVDKIAVGQDARQGPDVSREGVQRDLLPIV 298

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+V+TKYG + TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L  +DF  ILT
Sbjct: 299 EGSTVTTKYGVVRTDHVLFIAAGAFHTSKPSDLIPELQGRFPIRVELEPLTDADFVRILT 358

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + L  QY  L+ TEGI + F ++++  LA +A  +NS   +IGARRL TV+ER+LE+
Sbjct: 359 EPRNALTKQYVALLSTEGIDIQFEDEAVRELAHIAAEVNSRTHNIGARRLHTVLERLLEE 418

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + FSA D+  +T+ I   YV   +     + D+ ++IL
Sbjct: 419 LLFSAPDIGPQTITITKPYVAERLDALVQDEDLANYIL 456


>gi|145353738|ref|XP_001421162.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|145357168|ref|XP_001422793.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|144581398|gb|ABO99455.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
 gi|144583037|gb|ABP01152.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU)
           [Ostreococcus lucimarinus CCE9901]
          Length = 542

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/442 (45%), Positives = 287/442 (64%), Gaps = 11/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P    + LD++I+GQ +AKRA A+ALRNRWRR ++   +RDE++PKNIL++GPTG GK
Sbjct: 101 LTPERATALLDKHIVGQTEAKRACAVALRNRWRRHRIGKPMRDEIVPKNILMIGPTGCGK 160

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++  +PF+KVE TKFTE+G+ GR+V+QIIRDLVD  I + ++  R +  +  
Sbjct: 161 TEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIRDLVDNGIAVTKQKMRAKFEKFV 220

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
               E +ILD + G+ A   TRE FR   RDG + D+ I++E+ D+       D  GG  
Sbjct: 221 EELIENKILDFVCGEGANDETREAFRTLYRDGTLDDRTIEVELPDSGGQNMKIDPSGGPI 280

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + ++           K +M+V +C P +   E D L+  +T+ +++I  VEN GI
Sbjct: 281 PIHELVIKVDKLFGNRKSTSKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITAVENDGI 340

Query: 247 VFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           VF+DE DKIV+     +G   S EGVQRDLLP++EGS VSTK+G++NTDHILFIASGAFH
Sbjct: 341 VFIDEIDKIVSSSDYRHGADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFIASGAFH 400

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
            ++P+D+L E+QGR P+RV LK L + D   ILT+ E N+I Q K LMKTEGI L+FT +
Sbjct: 401 SAKPSDMLAELQGRLPIRVELKGLTERDLYRILTEPEMNMIAQQKALMKTEGIDLEFTNE 460

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----------TVVID 415
           +I+ +A +A  +N TV +IGARRL TV+ER++ED+SF A +   K           V I 
Sbjct: 461 AIEHIASIAAKVNKTVDNIGARRLHTVLERIVEDLSFDAPERYAKFVAAGGKGELQVKIG 520

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            + +   IG+   + D+  F+L
Sbjct: 521 VKDIDDAIGNMLKQEDLSRFVL 542


>gi|319892269|ref|YP_004149144.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161965|gb|ADV05508.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464634|gb|ADX76787.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 469

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/463 (40%), Positives = 296/463 (63%), Gaps = 31/463 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F+P++IV  L+ YI+GQ++AK+ VAIALRNR+RR  L  +++ E+ PKNIL++GPTGVG
Sbjct: 7   KFTPKDIVDRLNEYIVGQEEAKKKVAIALRNRYRRSLLDDEVKQEIAPKNILMMGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPF+KVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++  V E 
Sbjct: 67  KTEIARRMAKIVGAPFLKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKANVVEA 126

Query: 126 ASINAEERILDALVG---KTATSNTREVFRK-------------------------KLRD 157
           A+  A ++++  LV    K A+ NT                               K + 
Sbjct: 127 ATQKANDKLVKLLVPSLKKKASQNTNNPLESLFGGAIPNFGQHNEEDEEEPPTEDIKTKR 186

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK---IRMSVQK 214
            EI  + ++ ++ +    +     PG   +   N +E   ++M     KK     + V+ 
Sbjct: 187 SEIRVQLLNGQLEEEKVKVKVEQDPGALGMLGTNQNEQMQEMMNQLMPKKKVEKELPVKT 246

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274
               L+   +D +ID +T +++++ + E  GI+F+DE DK+   +  +G  VSR+GVQRD
Sbjct: 247 ARKILVDQFADEMIDHETANQEALDLAEQMGIIFIDEIDKVATSNQNSGQDVSRQGVQRD 306

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
           +LP++EGS V TKYG+++T+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+ L+  DF
Sbjct: 307 ILPILEGSVVKTKYGTVSTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELQDLSVDDF 366

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + + +LI QY+ L+KTE ++++FT+++I  LA++A ++N    +IGARRL T++E
Sbjct: 367 VRILKEPKLSLIKQYEMLLKTEEVVVNFTDEAIYRLAEMAYHVNQETDNIGARRLHTILE 426

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 427 KMLEDLSFEAPNMPHAQVDITPQYVDDKLKTISTNKDLSEFIL 469


>gi|152993266|ref|YP_001358987.1| ATP-dependent protease ATP-binding subunit HslU [Sulfurovum sp.
           NBC37-1]
 gi|151425127|dbj|BAF72630.1| ATP-dependent protease HslVU, ATPase subunit HslU [Sulfurovum sp.
           NBC37-1]
          Length = 442

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 185/441 (41%), Positives = 279/441 (63%), Gaps = 10/441 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P+EIV  LD Y+IGQ DAK+ +A+ALRNR+RR QL  +++ ++ PKNIL++G TGVG
Sbjct: 3   NLTPKEIVVHLDNYVIGQDDAKKTIAVALRNRYRRMQLDHEMQQDVTPKNILMIGSTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++   PFIKVE +K+TE+G+VGR+VE +IRDL   A+ IVRES  ++  E+
Sbjct: 63  KTEIARRLAKMMNLPFIKVEASKYTEVGFVGRDVESMIRDLAATAMGIVRESENEKNAEK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRK------KLRDGEISDKEIDIEVADTSSDISNF 179
                E +I++ L+       + +   +      ++++     +   +++  T  +    
Sbjct: 123 IENYIENKIIEKLLPPLPAGASEQKQAEYDASFARMQEKFAKGELDHLKIKVTMPNNPQM 182

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G    ++ + E   KV+G   KK  +  ++V++    L ++ S+ L+D + +   +
Sbjct: 183 -PEEGLPPQMIQVQESIVKVLGGMGKKGPEKEVTVKEAKKILAQEASETLLDEEQLKELA 241

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           ++ VE  GIVFLDE DKI    +  G    S+EGVQRDLLP+VEGS+V TK G + TDHI
Sbjct: 242 LEKVEKGGIVFLDEVDKIAVPSNSQGRQDPSKEGVQRDLLPIVEGSTVVTKLGQVKTDHI 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAFH+S+P+DL+PE+QGRFP+RV L SLN+     ILT+ + +L+ QY+ LM  E
Sbjct: 302 LFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLNEEALYRILTEPKHSLVKQYQALMAVE 361

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L F E ++ A+A  ++  N    DIGARRL TVME++LE+ISF+A +   + V ID 
Sbjct: 362 GVELVFEESALHAIAHYSLMANEKTEDIGARRLHTVMEKILEEISFTADEHVGEKVTIDE 421

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
             V+  IG    + D   +IL
Sbjct: 422 ALVKEKIGQVVEDEDTTRYIL 442


>gi|227903868|ref|ZP_04021673.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|227868259|gb|EEJ75680.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 466

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 190/467 (40%), Positives = 288/467 (61%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QLP  ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151
             A + ++  L                                           N R   
Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL    + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +L+D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIVNKDLTKFIL 466


>gi|330685673|gb|EGG97314.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           epidermidis VCU121]
          Length = 467

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/467 (38%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 127 ATQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L +G++ ++++ I+V      +          +      ++ +++M   +  +  +
Sbjct: 187 IKKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VS++G
Sbjct: 241 PVKTARKILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSKQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+
Sbjct: 301 VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL + + +L+ QY+ L++TE + ++F++++I  LA++A  +N    +IGARRL 
Sbjct: 361 VEDFVRILKEPKLSLVKQYEALLQTEEVTVNFSDEAITRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|58337282|ref|YP_193867.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           acidophilus NCFM]
 gi|81311472|sp|Q5FKD8|HSLU_LACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|58254599|gb|AAV42836.1| ATP dependant protease, ATP binding unit, heatshock protein
           [Lactobacillus acidophilus NCFM]
          Length = 466

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 190/467 (40%), Positives = 288/467 (61%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QLP  ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151
             A + ++  L                                           N R   
Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL    + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +L+D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  L+K +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIMNKDLTKFIL 466


>gi|313680128|ref|YP_004057867.1| heat shock protein hslvu, atpase subunit hslu [Oceanithermus
           profundus DSM 14977]
 gi|313152843|gb|ADR36694.1| heat shock protein HslVU, ATPase subunit HslU [Oceanithermus
           profundus DSM 14977]
          Length = 419

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 193/433 (44%), Positives = 274/433 (63%), Gaps = 15/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV+ELD+Y+IGQQ+AK+AVA+ALRNR+RRQ+LP +LR E+ PKNIL++GPTGV
Sbjct: 2   TELTPREIVAELDKYVIGQQEAKKAVAVALRNRYRRQKLPPELRREVSPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARL+GAPF+KVE TKFTE+GYVGR+V+ I+RDL +VA  +V   + ++V  
Sbjct: 62  GKTEIARRLARLSGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMREKTEQVAA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            A+  A  +I   L       +             + D E           +    + GG
Sbjct: 122 VAARLASSQIAQMLNVPHEDVSA-----------GLYDHEYVEVEVPEEPKLPFMGMLGG 170

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +  L ++ S ++   R  + RM V +    L   E++RL+D + V +++++  +  
Sbjct: 171 MEGQMQGLQDMLSGLL-PKRPVRKRMRVVEAREVLKNQEAERLVDKEEVSQEAVRRAQED 229

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI    +  G  VS EGVQRDLLP+VEG+ V+T+ G I+T+H+LFI +GAF
Sbjct: 230 GIVFLDEIDKIAGSSAVQGPDVSGEGVQRDLLPIVEGTVVNTRLGPISTEHVLFIGAGAF 289

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           +V++P+DL+PE+QGRFP+RV L  L   DF  IL  TE++LI QY EL+ T+G  L F +
Sbjct: 290 NVAKPSDLIPELQGRFPIRVELAELTAEDFERILRHTENSLIKQYTELLATDGTELVFAD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++I A+AD A   N  + DIGARRL TV+E +LE++SF     +   V I  EYV   + 
Sbjct: 350 EAIRAVADFAYRANRELEDIGARRLATVLEYLLEEVSFQV---ELGRVEITKEYVEERLA 406

Query: 425 DFPSETDMYHFIL 437
                 D+  +IL
Sbjct: 407 SVLESEDLSRYIL 419


>gi|239636268|ref|ZP_04677270.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           warneri L37603]
 gi|239597623|gb|EEQ80118.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus
           warneri L37603]
          Length = 467

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/467 (38%), Positives = 296/467 (63%), Gaps = 41/467 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR  L  + + E+ PKNIL++GPTGVG
Sbjct: 7   KLTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++
Sbjct: 67  KTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDE 126

Query: 126 ASINAEERILDALVGKTAT-----------------------------------SNTREV 150
           A+  A ++++  LV                                           R  
Sbjct: 127 ATQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSE 186

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +K+L +G++ ++++ I+V      +          +      ++ +++M   +  +  +
Sbjct: 187 IKKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQM-----QDMMNQLMPKKKV-EREV 240

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V+     L  D +D LID +T +++++++ E  GI+F+DE DK+   +  +G  VSR+G
Sbjct: 241 PVKTARKILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG 300

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP++EGS + T+YG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+
Sbjct: 301 VQRDILPILEGSMIQTQYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLS 360

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             DF  IL + + +L+ QY+ L++TE + ++F++++I  LA++A  +N    +IGARRL 
Sbjct: 361 VEDFVRILKEPKLSLVKQYEALLQTEEVTVNFSDEAIIRLAEIAYQVNQDTDNIGARRLH 420

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+SF A ++    V I  +YV   +    +  D+  FIL
Sbjct: 421 TILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467


>gi|325125938|gb|ADY85268.1| ATP dependant protease, ATP binding unit, heatshock protein
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 464

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVG 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 421 EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|104774156|ref|YP_619136.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123378434|sp|Q1G9V4|HSLU_LACDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|103423237|emb|CAI98070.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 464

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRTQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVG 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 421 EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|313123909|ref|YP_004034168.1| ATP-dependent hsl protease ATP-binding subunit hslu [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280472|gb|ADQ61191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325686012|gb|EGD28071.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 464

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVS 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 421 EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|71424579|ref|XP_812843.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|71657076|ref|XP_817058.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70877671|gb|EAN90992.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
 gi|70882227|gb|EAN95207.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 474

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 196/435 (45%), Positives = 282/435 (64%), Gaps = 14/435 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR  +  ++R+E+ PKNIL++GPTGVG
Sbjct: 51  NMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPTGVG 110

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   ++   +++   +    
Sbjct: 111 KTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQNEAV 170

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+RIL AL G +      + FR+ LR G + D E+ +E+ + +           A
Sbjct: 171 ARQKAEDRILKALAGVS------DGFREHLRSGALDDIEVMVELQEKAPKPKT-----AA 219

Query: 186 SVGILNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             G+    +L   +     R  K  + ++   P + ++E ++++D + V  ++++  E  
Sbjct: 220 GEGVFIAIDLPGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRACEED 279

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIASG 302
           GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   I TD ILFI SG
Sbjct: 280 GIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILFICSG 339

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH  +P+D+L E+QGR P+RV LK L   DF  I+T+ + NLI Q+  +M+TEG+ L F
Sbjct: 340 AFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGVKLVF 399

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED++  +A VA ++NSTV +IGARRL T+ E+V+E+ISF   D + +T VIDAEYV+  
Sbjct: 400 TEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEYVKKS 459

Query: 423 IGDFPSETDMYHFIL 437
           + +   + D+  FIL
Sbjct: 460 VENMVKKVDIKKFIL 474


>gi|11133033|sp|Q48735|HSLU_LACLE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 464

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/464 (40%), Positives = 281/464 (60%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVS 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 421 EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|300812252|ref|ZP_07092690.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496766|gb|EFK31850.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 464

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 186/464 (40%), Positives = 280/464 (60%), Gaps = 38/464 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YIIGQ +AK++VAIAL NR+RR QLP  ++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIIGQNEAKKSVAIALYNRYRRAQLPEYVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVG 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  IL D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATIL 420

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++LE++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 421 EKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|322824663|gb|EFZ29997.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 475

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 196/435 (45%), Positives = 282/435 (64%), Gaps = 14/435 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR  +  ++R+E+ PKNIL++GPTGVG
Sbjct: 51  NMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPTGVG 110

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   ++   +++   +    
Sbjct: 111 KTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQNEAV 170

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A   AE+RIL AL G +      + FR+ LR G + D E+ +E+ + +           A
Sbjct: 171 ARQKAEDRILKALAGVS------DGFREHLRSGALDDIEVMVELQEKAPKPKT-----AA 219

Query: 186 SVGILNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             G+    +L   +     R  K  + ++   P + ++E ++++D + V  ++++  E  
Sbjct: 220 GEGVFIAIDLPGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRACEED 279

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIASG 302
           GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   I TD ILFI SG
Sbjct: 280 GIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILFICSG 339

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH  +P+D+L E+QGR P+RV LK L   DF  I+T+ + NLI Q+  +M+TEG+ L F
Sbjct: 340 AFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGVKLVF 399

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           TED++  +A VA ++NSTV +IGARRL T+ E+V+E+ISF   D + +T VIDAEYV+  
Sbjct: 400 TEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEYVKKS 459

Query: 423 IGDFPSETDMYHFIL 437
           + +   + D+  FIL
Sbjct: 460 VENMVKKVDIKKFIL 474


>gi|254556718|ref|YP_003063135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|254045645|gb|ACT62438.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
          Length = 472

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/471 (41%), Positives = 285/471 (60%), Gaps = 42/471 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV+ LD Y+IGQ  AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGVG
Sbjct: 5   NKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++     VR Q
Sbjct: 65  KTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRAQ 124

Query: 126 ASINAEERILDALVGKTATS---------------------------------------N 146
           A   A++R++  LV                                             N
Sbjct: 125 AVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVRN 184

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
            R     +L+ G + + E+ IE+ D     +            ++L +    +M   R +
Sbjct: 185 QRLSVADQLKTGRLENSEVTIEMDDPQQAAAG--NNNMLGQMGIDLGDSLGALMPKKRIQ 242

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
              M V +    L+R+ES++L++   ++ D+I   EN GI+F+DE DKI          V
Sbjct: 243 -RTMPVSEAREILVREESEKLVNNADIYHDAIVCAENTGIIFIDEIDKITKGGQQGSGEV 301

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEGS +STKYG INTDHILFIASGAF  S+P+DL+ E+QGRFP+RV L
Sbjct: 302 SREGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVEL 361

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+K DF  ILT+ ++ LI QY  L+ T+ I + FT ++I+A+A +A  +N    +IGA
Sbjct: 362 DDLSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGA 421

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++E++LE++ +   D++   V I   YV   IG+   + D+  +IL
Sbjct: 422 RRLHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472


>gi|297566080|ref|YP_003685052.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus
           DSM 9946]
 gi|296850529|gb|ADH63544.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus
           DSM 9946]
          Length = 418

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/434 (44%), Positives = 279/434 (64%), Gaps = 17/434 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD++IIGQ+ AK+AVA+ALRNR+RR++LPA L  E++P+NIL++GPTGV
Sbjct: 1   MNLTPAEIVRELDKHIIGQESAKKAVAVALRNRYRRKRLPAALAREIVPRNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V +  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEASYQMVLQELKAKVAE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A+  AEE++   L                +R G   D+ ++IEV + S     F    G
Sbjct: 121 RATAQAEEQLSALLRVSAFD----------IRSGRFDDQLVEIEVDEESQ--LPFMGVLG 168

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +  L  +   ++   R ++     ++    L   E++RL+D +   ++ ++  +  
Sbjct: 169 GGDQMQGLGNMLKGLLPQRRVRRRMRV-KEALEVLKNQEAERLVDKEEATQEGLRRAQED 227

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DK+  +     G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+GA
Sbjct: 228 GIVFIDEIDKVARKQGSVGGPDVSGEGVQRDLLPVVEGTVVSTRLGPVSTEHVLFIAAGA 287

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DL+PE+QGRFP+RV L SL   +F  ILT+ ES+L+ QY EL+K +G  + FT
Sbjct: 288 FHVSKPSDLIPELQGRFPIRVELSSLGAEEFERILTEPESSLLKQYTELLKADGTEIHFT 347

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            +++ A+A  A   N  + DIGARRL TV+ERVLE++SF         V I  EYV   +
Sbjct: 348 PEAVRAIAQYAHAANRDLEDIGARRLSTVLERVLEEVSFQ---TDLGKVEITKEYVEARL 404

Query: 424 GDFPSETDMYHFIL 437
               +  D+  +IL
Sbjct: 405 ASVVASPDLSRYIL 418


>gi|159465693|ref|XP_001691057.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas
           reinhardtii]
 gi|158279743|gb|EDP05503.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas
           reinhardtii]
          Length = 559

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/451 (43%), Positives = 281/451 (62%), Gaps = 17/451 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P+ +V  LD+YIIGQ DAKRAVA+A RNRWRR+++PA +RD+++PKNILL+GPT
Sbjct: 110 LHEKMTPKSVVELLDKYIIGQDDAKRAVAVAYRNRWRRKRVPATIRDDIVPKNILLIGPT 169

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++  I++VR   R + 
Sbjct: 170 GCGKTEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAGISLVRSRLRKQH 229

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                +  EERIL AL+ +       +  R +LR+GE+ D  I++++  +    S   I 
Sbjct: 230 EAALKMAVEERILAALLRQDHLGGA-DALRTRLRNGELEDAFIEVDLTSSGRGGSGGGII 288

Query: 183 GGASVGILNLSELFSKVMGSGRKKK------IRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                G      +   +      K+      +R  V++    L   E++R+   + + ++
Sbjct: 289 DLGGGGGGPQGPVVINLERLMSGKRDVRTLRVRHGVREARSLLEDSEAERMFPPEQLVKE 348

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG----NGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +I   E  GIVF+DE DKIV+   G         S EGVQRDLLP++EGS VSTK+G++N
Sbjct: 349 AITATEQDGIVFIDEIDKIVSGGRGERSWRSGDPSSEGVQRDLLPIIEGSVVSTKHGNVN 408

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFI +GAFH  +P+DL+ E+QGR P+RV LK L + DF  ILT+ E NLI Q + L
Sbjct: 409 TDHILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFLRILTEPEYNLIKQQQVL 468

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--- 409
           +  EGI L+FT D++  +  VA  +N T+ +IGARRL  V+ERV+E++SFSA +L+    
Sbjct: 469 LAAEGIELEFTADALAEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSFSAPELKGAYT 528

Query: 410 ---KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                  ID  +V   +     + D+  +IL
Sbjct: 529 GPKVKYFIDKAHVDRTLSSLLQKQDLSRYIL 559


>gi|28378504|ref|NP_785396.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           WCFS1]
 gi|300767450|ref|ZP_07077362.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180661|ref|YP_003924789.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|32129621|sp|Q88W26|HSLU_LACPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|28271340|emb|CAD64245.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           plantarum WCFS1]
 gi|300495269|gb|EFK30425.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046152|gb|ADN98695.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 472

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/471 (41%), Positives = 285/471 (60%), Gaps = 42/471 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P++IV+ LD Y+IGQ  AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGVG
Sbjct: 5   NKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++     VR Q
Sbjct: 65  KTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRAQ 124

Query: 126 ASINAEERILDALVGKTATS---------------------------------------N 146
           A   A++R++  LV                                             N
Sbjct: 125 AVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVRN 184

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
            R     +L+ G + + E+ IE+ D     +            ++L +    +M   R +
Sbjct: 185 QRLSVADQLKTGRLENSEVTIEMDDPQQAAAG--NNNMLGQMGIDLGDSLGALMPKKRIQ 242

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
              M V +    L+R+ES++L++   ++ D+I   EN GI+F+DE DKI          V
Sbjct: 243 -RTMPVSEAREILVREESEKLVNNADIYHDAIVRAENTGIIFIDEIDKITKGGQQGSGEV 301

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRD+LP+VEGS +STKYG INTDHILFIASGAF  S+P+DL+ E+QGRFP+RV L
Sbjct: 302 SREGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVEL 361

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+K DF  ILT+ ++ LI QY  L+ T+ I + FT ++I+A+A +A  +N    +IGA
Sbjct: 362 DDLSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGA 421

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++E++LE++ +   D++   V I   YV   IG+   + D+  +IL
Sbjct: 422 RRLHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472


>gi|227893509|ref|ZP_04011314.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|227864679|gb|EEJ72100.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
          Length = 466

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/467 (40%), Positives = 289/467 (61%), Gaps = 42/467 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQREITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151
             A ++++  L                                           N R   
Sbjct: 125 KEANKQLVRLLAPGVKRENRENQMQQMQDMMSMLMGGGNNQNNNDQEEVTDEVRNQRMDV 184

Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  +
Sbjct: 185 AEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSREG
Sbjct: 240 PVKEAREVLIQEESRKMVDYDTIYQRAIERTQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L 
Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL 
Sbjct: 360 KEDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LED+ +   D++   + I   YV   +GD     D+  FIL
Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIIMNKDLTKFIL 466


>gi|260101611|ref|ZP_05751848.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075]
 gi|260084574|gb|EEW68694.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075]
          Length = 467

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 191/468 (40%), Positives = 287/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATS-------------------------------------NTREV 150
             A ++++  L                                            N R  
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184

Query: 151 FRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +KL  G + D+E+ IEV     ++  +  +          LS++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|161507476|ref|YP_001577430.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           helveticus DPC 4571]
 gi|172048284|sp|A8YV51|HSLU_LACH4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|112148388|gb|ABI13541.1| ATP-dependent protease Hs IVU ATPase subunit-like protein
           [Lactobacillus helveticus CNRZ32]
 gi|160348465|gb|ABX27139.1| ATP dependant protease ATP-binding subunit [Lactobacillus
           helveticus DPC 4571]
          Length = 467

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/468 (40%), Positives = 287/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATS-------------------------------------NTREV 150
             A ++++  L                                            N R  
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184

Query: 151 FRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|256843166|ref|ZP_05548654.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           crispatus 125-2-CHN]
 gi|256850235|ref|ZP_05555664.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|262046373|ref|ZP_06019335.1| heat shock protein [Lactobacillus crispatus MV-3A-US]
 gi|293380242|ref|ZP_06626323.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus 214-1]
 gi|295692922|ref|YP_003601532.1| ATP-dependent protease hslvu, atpase subunit hslu [Lactobacillus
           crispatus ST1]
 gi|312977301|ref|ZP_07789049.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus CTV-05]
 gi|256614586|gb|EEU19787.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           crispatus 125-2-CHN]
 gi|256712872|gb|EEU27864.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|260573244|gb|EEX29802.1| heat shock protein [Lactobacillus crispatus MV-3A-US]
 gi|290923209|gb|EFE00131.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus 214-1]
 gi|295031028|emb|CBL50507.1| ATP-dependent protease HslVU, ATPase subunit HslU [Lactobacillus
           crispatus ST1]
 gi|310895732|gb|EFQ44798.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           crispatus CTV-05]
          Length = 465

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/466 (41%), Positives = 288/466 (61%), Gaps = 41/466 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKTQAT 124

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
             A + ++  L                                          N R    
Sbjct: 125 KEANKELVRLLAPAEKHERRENQMQQMQDMMSMLMGENNREEDHEEDVSADVRNKRMDVA 184

Query: 153 KKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           +KL  G + D E+ IEV     ++  +  +          LS+L  K     +K K  +S
Sbjct: 185 EKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPK-----KKVKRTLS 239

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           V++    L+++ES +L+D D +++ +I+  +N GI+F+DE DKI+A +  N   VSREGV
Sbjct: 240 VKEAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGV 299

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K
Sbjct: 300 QRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTK 359

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +IGARRL T
Sbjct: 360 DDFVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLST 419

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E++LED+ +   D++   + +   YV   +GD     D+  FIL
Sbjct: 420 ILEKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 465


>gi|269792951|ref|YP_003317855.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100586|gb|ACZ19573.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 460

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/462 (45%), Positives = 299/462 (64%), Gaps = 32/462 (6%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PR +V  LDR+I+GQ  AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGV
Sbjct: 2   MDLTPRMVVEYLDRHIVGQSKAKRAVAVALRNRIRRRRLPEELAREVYPKNILMVGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+VA  +VR  R +EV  
Sbjct: 62  GKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVAFQMVRSRRLEEVSP 121

Query: 125 QASINAEERILDALVGKTA-----------------------------TSNTREVFRKKL 155
           +A   AEER+LDAL+                                  S TRE  R+ L
Sbjct: 122 EARRRAEERVLDALLPSPKPRTEGLNFLKLLGVEGSQEEAAPEEPDERRSATREKLRELL 181

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++ ++ +++EV +  S + N  + G      L+L ++   +    R ++  M+V K 
Sbjct: 182 RARKLDERTVEVEVFE--SPLPNVAVMGPMGGEGLDLGDMLGGLF-PKRPRRKSMTVAKA 238

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
             EL  DE+D+L+D +++ R+++++ E  GIVF+DE DKI +  + +G  VSREGVQRDL
Sbjct: 239 LEELEADEADKLLDRESLSREAVRLAEEEGIVFIDEMDKIASSGASHGPDVSREGVQRDL 298

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LPLVEG+ V+TKYG + TDH+LFIA+GAFH  +P+DL PE+QGRFP+RV L+ L + D  
Sbjct: 299 LPLVEGTVVNTKYGPVRTDHVLFIAAGAFHKVKPSDLAPELQGRFPIRVELEPLGEEDLY 358

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + +L +QY EL++T+G+ L F ++ +  +A +A  +N  + DIGARRL T+ME 
Sbjct: 359 RILVEPQGSLTVQYGELLRTDGVELKFLDEGLREVAQMAHRMNREMEDIGARRLHTLMEM 418

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +LED+SF A D     V +D EYV   +G    E D   ++L
Sbjct: 419 LLEDLSFEAPDGVRGEVTVDREYVASRVGGLLEERDPRRYLL 460


>gi|307720795|ref|YP_003891935.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978888|gb|ADN08923.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas
           autotrophica DSM 16294]
          Length = 442

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/444 (43%), Positives = 293/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+I Q+DAK+ +A+ALR R+RR QL  +L++E+ PKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDNYVIAQKDAKKTIALALRTRYRRMQLDDELKNEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I+IV+  +    +E
Sbjct: 61  GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVNSISIVKAEQEKANKE 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +       +I + L+                   E   K++  GE+ DK I++E+   + 
Sbjct: 121 KIENYIINKITEKLLPPLPAGASESKKDDYQRLLEAMEKRIESGEMDDKVIELEIEKLNV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + ++ ++P   +    + S++F+ +  +    K  ++V+     L ++ + +L+DM  V+
Sbjct: 181 EFNDTNLPPEMAKVQESFSKVFATI--NKEDNKKEVTVKDAKILLRQEAATKLLDMTRVN 238

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+FLDE DKI  +  S      S+EGVQRDLLP+VEGSSVSTKYG+INT
Sbjct: 239 AEALRRAENGGIIFLDEIDKIALSEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTINT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L +     ILT T+S+L+ QY+ L+
Sbjct: 299 DHILFIAAGAFHVSKPSDLIPELQGRFPLRVELEALTEDTLYKILTQTQSSLLKQYQALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             EG+ L F ++++ A+A +A   N T  DIGARRL TV+E +LEDISF+A++ + K  +
Sbjct: 359 AVEGMELIFEDEAVRAIAKLAHRANETAEDIGARRLHTVLELILEDISFNAAEYKGKEFI 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I A+ V   + D   + D+  +IL
Sbjct: 419 ITAKLVHEKLDDAVEDEDLSRYIL 442


>gi|116328185|ref|YP_797905.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330909|ref|YP_800627.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120929|gb|ABJ78972.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124598|gb|ABJ75869.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 477

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/462 (43%), Positives = 303/462 (65%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVG
Sbjct: 17  ELTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVG 76

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E 
Sbjct: 77  KTEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEET 136

Query: 126 ASINAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEI 160
           A   AEE +LD L+     +                          TRE  RKKL+ G++
Sbjct: 137 AKQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKL 196

Query: 161 SDKEIDIEVADTSS---DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            D+E+++++ + S     +      G        L  +   +    + KK ++ + +   
Sbjct: 197 DDQEVELDLPNPSVSQIPMLQVFGAGNLDDLDNQLQNVLGDL-LPKKNKKRKLKIPEAIK 255

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L   E+D+L+D D V R++++ VE  GI+FLDE DKI  R+  NG  VSREGVQRDLLP
Sbjct: 256 TLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLLP 315

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF  I
Sbjct: 316 IVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEKI 375

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT   S+L  QY+ L+ T+GI L+F+ D I  +A +A ++N    +IGARRL T++ER+L
Sbjct: 376 LTAPRSSLARQYEALLFTDGIQLEFSSDGIQEIARIAYDMNEKHENIGARRLNTILERLL 435

Query: 398 EDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++SF   DL E  K + ID +YV   +     + D+  +IL
Sbjct: 436 EEVSFEGPDLPENQKNIKIDGKYVMDRLQGVIQDKDLSQYIL 477


>gi|227879133|ref|ZP_03997017.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
 gi|227861290|gb|EEJ68925.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
          Length = 468

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 290/473 (61%), Gaps = 41/473 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK     +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL  +++ E+ PKN+L+ G
Sbjct: 1   MKEMAIKTPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +  
Sbjct: 61  PTGVGKTEIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFA 120

Query: 121 EVREQASINAEERILDALVGKTATS----------------------------------- 145
            V+ QA+  A + ++  L                                          
Sbjct: 121 RVKTQATKEANKELVRLLAPAEKHERRENQMQQMQDMMSMLMGENNREEDHEEDVSADVR 180

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           N R    +KL  G + D E+ IEV     ++  +  +          LS+L  K     +
Sbjct: 181 NKRMDVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPK-----K 235

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           K K  +SV++    L+++ES +L+D D +++ +I+  +N GI+F+DE DKI+A +  N  
Sbjct: 236 KVKRTLSVKEAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSG 295

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSREGVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV
Sbjct: 296 EVSREGVQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRV 355

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L +L K DF  IL D +++L+ QY  LMK +GI L FT++++D +A++A ++N    +I
Sbjct: 356 ELNALTKDDFVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNI 415

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL T++E++LED+ +   D++   + +   YV   +GD     D+  FIL
Sbjct: 416 GARRLSTILEKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 468


>gi|288573038|ref|ZP_06391395.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568779|gb|EFC90336.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 474

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 292/467 (62%), Gaps = 37/467 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P  IVS LDRYI+GQ  AKRAVAIALRNR+RR+ L  +L  E+ PKNIL+VGPTGVGK
Sbjct: 9   LVPSAIVSYLDRYIVGQDKAKRAVAIALRNRFRRRMLDPELAKEVAPKNILMVGPTGVGK 68

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V++   ++V+  A
Sbjct: 69  TEIARRLAELVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIQMVKKRMLEDVQTPA 128

Query: 127 SINAEERILDALVGKTAT-----------------------------------SNTREVF 151
              A +R++D LV    T                                    +TR   
Sbjct: 129 MERARDRVVDFLVPGKKTRSGGMPTFMSVIKGMSGEDDSQEEEQETPEEDRMRQSTRSKL 188

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
              L  G++ D+E++IE+ ++           G     +NL E+   +M   +K+K    
Sbjct: 189 LDLLAQGKLDDREVEIEIQESPQMGIPIMGGAGMDEMGINLGEMLGGLMPKKKKRKTMKV 248

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREG 270
            +     L  +E+++LID++   R  ++  +  GI+F+DE DKIV++ SG G   VSR+G
Sbjct: 249 -KDALRVLQNEEAEKLIDVEAATRMGMEKAQEEGIIFVDEIDKIVSKGSGGGGHDVSRDG 307

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRDLLP+VEG +V TK+G ++TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L++L+
Sbjct: 308 VQRDLLPVVEGCTVQTKHGQVSTDHVLFIAAGAFHQSKPSDLVPELQGRFPIRVELEALD 367

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K+    ILT+ + +LI QY+ L+KTE + L F ++ +  +A +A  +N  + +IGARRL 
Sbjct: 368 KAQLARILTEPKHSLIEQYEALLKTEEVYLVFEDEGVREIASLAERMNLEMENIGARRLH 427

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T++E++LEDISF A + + +T  +D  +V+  +     ++D+  ++L
Sbjct: 428 TMVEQLLEDISFEAPERKGETFTVDGSFVKDRLEPLVKDSDVRRYLL 474


>gi|260664455|ref|ZP_05865307.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561520|gb|EEX27492.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii SJ-7A-US]
          Length = 460

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 186/461 (40%), Positives = 279/461 (60%), Gaps = 36/461 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAQQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + D+++ IEV          +        +          M   +K K  ++V+   
Sbjct: 185 KGLLEDRQVTIEVEQAPK----VNPMSDMMGQMGMDMNSLLGDMMPKKKVKRTLAVRDAR 240

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD+L
Sbjct: 241 EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAGQ-VSREGVQRDIL 299

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF  
Sbjct: 300 PIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVS 359

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E++
Sbjct: 360 ILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKL 419

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 LEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|238855700|ref|ZP_04645997.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 269-3]
 gi|282932214|ref|ZP_06337661.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|313472145|ref|ZP_07812637.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 1153]
 gi|238831685|gb|EEQ24025.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 269-3]
 gi|239529516|gb|EEQ68517.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 1153]
 gi|281303664|gb|EFA95819.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
          Length = 460

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 186/461 (40%), Positives = 279/461 (60%), Gaps = 36/461 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGFQQAQQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + D+++ IEV          +        +          M   +K K  ++V+   
Sbjct: 185 KGLLEDRQVTIEVEQAPK----VNPMSDMMGQMGMDMNSLLGDMMPKKKVKRTLAVRDAR 240

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD+L
Sbjct: 241 EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAGQ-VSREGVQRDIL 299

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF  
Sbjct: 300 PIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVS 359

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E++
Sbjct: 360 ILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKL 419

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 LEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|323466638|gb|ADX70325.1| ATP-dependent protease ATPase subunit HslU [Lactobacillus
           helveticus H10]
          Length = 467

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 286/468 (61%), Gaps = 43/468 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AK++VAIAL NR+RR QL   ++ E+ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+ QA+
Sbjct: 65  EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124

Query: 128 INAEERILDALVGKTATSNT-------------------------------------REV 150
             A ++++  L                                              R  
Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRKERMD 184

Query: 151 FRKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +KL  G + D+E+ IEV     ++  +  +          L+++  K     +K K  
Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +SV+     L+++ES +++D DT+++ +I+  +N GI+F+DE DKI+A +  N   VSRE
Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L
Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K DF  IL D +++L+ QY  LMK +GI L FT++++D +A +A ++N    +IGARRL
Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T++E++LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467


>gi|221633581|ref|YP_002522807.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium
           roseum DSM 5159]
 gi|221156004|gb|ACM05131.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium
           roseum DSM 5159]
          Length = 474

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/465 (45%), Positives = 298/465 (64%), Gaps = 32/465 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T   +P EIV+ELDRYI+GQ++AKRAVAIA+RNRWR QQLPA++R +++PKNIL++GPTG
Sbjct: 11  TLPLTPAEIVAELDRYIVGQEEAKRAVAIAIRNRWRWQQLPAEVRRDIVPKNILMIGPTG 70

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RR+A+L  APF+KVE TKFTE+GYVGR+VE I+R+LV+V+I+ +   R + VR
Sbjct: 71  VGKTEIARRVAQLVDAPFVKVEATKFTEVGYVGRDVESIVRELVEVSISSLHGERLEAVR 130

Query: 124 EQASINAEERILDALVGKTATSNTREV-----------------------------FRKK 154
           E+AS  A +R++D LV +      +                                   
Sbjct: 131 EEASRAALQRLVDILVEQRERRRAKRQGSEAEAEPEEEAPEERRKRERRMARERRRLLDL 190

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSV 212
           L    + D+ I++++  +  D+          V +    E  + ++     R++  R+SV
Sbjct: 191 LSRDGLEDETIELDLE-SEFDLFVTPYAENGGVDLDEFQETVADLLETLQARRRTRRVSV 249

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L + E+ RL+D D V   +I+  E  GIVF+DE DK++ +D   G  VS EGVQ
Sbjct: 250 REARRILTQQEAQRLVDFDAVVEAAIKRAEESGIVFIDEIDKLITKDGEYGPDVSGEGVQ 309

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEGS V T+YG + TDHILFIA+GAFH + P+DL+PE+QGRFP+RV L+ L + 
Sbjct: 310 RDLLPIVEGSVVMTRYGPVRTDHILFIAAGAFHNASPSDLIPELQGRFPIRVELQRLTED 369

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   ILT  E+ L  QY+EL+  EG+ L FTED +  +A +A  +NS   DIGARRL T+
Sbjct: 370 DLYRILTVPENALTWQYRELLSVEGVELVFTEDGLREVARLAALVNSRAEDIGARRLATI 429

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ME+V+E+ISF A +L  +TV IDA+YVR  +G   ++ D+  FIL
Sbjct: 430 MEKVIEEISFRAPELAGQTVCIDADYVRQRVGTIVADEDLSKFIL 474


>gi|319957237|ref|YP_004168500.1| heat shock protein hslvu, atpase subunit hslu [Nitratifractor
           salsuginis DSM 16511]
 gi|319419641|gb|ADV46751.1| heat shock protein HslVU, ATPase subunit HslU [Nitratifractor
           salsuginis DSM 16511]
          Length = 440

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 194/440 (44%), Positives = 276/440 (62%), Gaps = 9/440 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV  LDRY+IGQQ+AK+ +AIALRNRWRR QL  +++ +++PKNIL++G TGVGK
Sbjct: 1   MTPQEIVEYLDRYVIGQQEAKKTIAIALRNRWRRMQLDEEMQRDVVPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ISRRLAR+   PFIKVE +KFTE+G+VGR+VE IIRDL   A+ +VRE   +  +E+ 
Sbjct: 61  TEISRRLARMMKLPFIKVEASKFTEVGFVGRDVESIIRDLTVTALQLVREEENERNKEKI 120

Query: 127 SINAEERILDALVGK---TATSNTREVF-----RKKLRDGEISDKEIDIEVADTSSDISN 178
               E +I++ L+      A+   R+ +     R + R        + IEV      +  
Sbjct: 121 EAYVENKIIEKLLPPLPAGASEQKRQEYEASFARMQARLERGELDHLKIEVEMPPPGVDL 180

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                   +  +  S L        + +K  ++V++    L  + S  L+D + +   +I
Sbjct: 181 SGGNVPPEMANVQESILKVLGGLGKKGQKKEVTVKEARKILEAEASQELLDEEKLKAKAI 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           + VE  GIVFLDE DKI    +  G    S+EGVQRDLLP+VEGS+V+TK G +NTDHIL
Sbjct: 241 EKVEQGGIVFLDEIDKIAVPSNVTGRQDPSKEGVQRDLLPIVEGSTVTTKIGPVNTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           FIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT+ +++LI QYK LM  EG
Sbjct: 301 FIAAGAFHLSKPSDLIPELQGRFPLRVELSSLDEEALYRILTEPKNSLIKQYKALMAVEG 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L+F E ++ A+A  +   N    DIGARRL TVMER+LED+SF A   + +T+VID  
Sbjct: 361 VTLEFEESALRAIARYSALANEKTEDIGARRLHTVMERILEDLSFEADKRKGETIVIDVA 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
           +V   + +     D   +IL
Sbjct: 421 HVESKLEELVENEDTTRYIL 440


>gi|323339876|ref|ZP_08080145.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           ruminis ATCC 25644]
 gi|323092749|gb|EFZ35352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           ruminis ATCC 25644]
          Length = 491

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 190/469 (40%), Positives = 289/469 (61%), Gaps = 42/469 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV+ELD+Y++GQ  AK+AVAIALRNR+RR QL  D+++E+ PKN++++GPTGVGKT
Sbjct: 26  TPKEIVAELDKYVVGQAKAKKAVAIALRNRYRRMQLSEDMQEEITPKNMMMIGPTGVGKT 85

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APFIKVE TKFTE+GYVGR+VE ++RDLV+V+  +  +     VR +A 
Sbjct: 86  EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVEVSYKMEEDEMFKNVRAEAV 145

Query: 128 INAEERILDALVGKTATSN---------------------------------------TR 148
             A++R++  LV                                               R
Sbjct: 146 AKADKRLVKLLVPAQKKQEKMSQQQAFSKMMSDLQSGNYANLFNQQEEPEDVTDEIADKR 205

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               +KLR G + ++EI +++ + SS     D  G      ++LS+  +++    +K   
Sbjct: 206 MSVAEKLRQGYLENEEITLQMDEPSSPSGAAD--GMLGQMGVDLSDALAQI-TPKKKITR 262

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L+R+ES +L++   +   +I+  EN GI+F+DE DKI ++   N   VSR
Sbjct: 263 TVTVKEAREILVREESAKLVNSWDIADAAIKRAENTGIIFIDEIDKITSKSKQNSGEVSR 322

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           EGVQRD+LP+VEGSS+ TKYG I TDHILFIASGAF  S+P+DL+ E+QGRFP+RV L  
Sbjct: 323 EGVQRDILPIVEGSSIKTKYGMIKTDHILFIASGAFAESKPSDLIAELQGRFPIRVELDD 382

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L K DF  ILT+ ++ L+ QY  L+ T+ + + FT+++I+ +A++A  +N    +IGARR
Sbjct: 383 LQKEDFVRILTEPKNALVKQYIALIGTDNVSVTFTKEAIEKIAEIACKVNHETENIGARR 442

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E++LED+ F   D+    + I   YV   +G    + D+  +IL
Sbjct: 443 LHTILEKLLEDLLFEGPDMHMGEITITEAYVEDKVGSIVDDRDLSQYIL 491


>gi|254705083|ref|ZP_05166911.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           3 str. 686]
 gi|261755785|ref|ZP_05999494.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 3 str. 686]
 gi|261745538|gb|EEY33464.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis
           bv. 3 str. 686]
          Length = 356

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 230/355 (64%), Positives = 296/355 (83%), Gaps = 2/355 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL   +R+E+MPKNIL++GPTGVG
Sbjct: 3   NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ +
Sbjct: 63  KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGG 184
           A +NAEER+LDALVGKTA+  TR+ FRKKLR+GE+ DKEI+IEV+D+ +S         G
Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGASPNFEIPGMPG 182

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           A++G+LN+S++  K M  GR K  + +V+  YP L+ DESD+L+D D + ++++++ E+ 
Sbjct: 183 ANIGVLNISDMLGKAM-GGRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSEDE 241

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGAF
Sbjct: 242 GIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGAF 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           HVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY  LM+TE + 
Sbjct: 302 HVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVK 356


>gi|320101720|ref|YP_004177311.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida
           ATCC 43644]
 gi|319749002|gb|ADV60762.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida
           ATCC 43644]
          Length = 541

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/494 (41%), Positives = 301/494 (60%), Gaps = 63/494 (12%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV ELDR I+GQ  AKRAVA+ALR+RWRR++LP + R  + PKNIL++GPTGVG
Sbjct: 49  DLTPRRIVEELDRDIVGQDRAKRAVALALRDRWRRRRLPEETRRWITPKNILMIGPTGVG 108

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+KVE TK+TE+GY+GR+VE ++RDLV+ AI++V+E  R  V  Q
Sbjct: 109 KTEIARRLAQLVGAPFVKVEATKYTEVGYIGRDVESMVRDLVEAAISLVKERERKRVASQ 168

Query: 126 ASINAEERILDALVGKTATS---------------------------------------- 145
           A   AEER++D L+  +A+S                                        
Sbjct: 169 AQARAEERLIDLLLPGSASSSATGWGGGSPRRPPAAPPFVSPFGFPFGTSAPAASDSDAA 228

Query: 146 -------------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                         +R+  R +LR+G+    E+++ +   ++   +     GA    + L
Sbjct: 229 TDSEDAAARERRQRSRDKLRAQLREGKADHLEVELVLPGRAAPPVSIIGAAGAEQMEMEL 288

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
             +F ++M     +  RM+V +  P L+  E + L+D +T+ R +I++ E  GI+F+DE 
Sbjct: 289 QSMFERMMPRP-ARPQRMTVAEARPILIEREVEALLDPETIQRSAIRLAEESGIIFIDEI 347

Query: 253 DKIVARDSGNG----IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           DK+   +   G      VSR GVQRDLLP+VEG++V+TKYG + TD++LFIA+GAFH +R
Sbjct: 348 DKVAGEEGAGGGGRGPDVSRGGVQRDLLPIVEGTTVTTKYGPVKTDYVLFIAAGAFHKAR 407

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
           P+DL+PE+QGRFP+RV L  L + DF  IL +   +L+ QY+ L+  EG+ L FT D+ID
Sbjct: 408 PSDLMPELQGRFPIRVELDDLTRDDFARILREPRVSLLNQYQALLAVEGVQLQFTPDAID 467

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVIDAEYVRLHI 423
           A+A++A  +N +  +IGARRL T++ERV+E+ISF+A D   +T     V IDA  VR  +
Sbjct: 468 AMAEIAYQVNRSTQNIGARRLHTILERVVEEISFNAPDQVAQTEDPLVVTIDAAEVRRKL 527

Query: 424 GDFPSETDMYHFIL 437
                + D+  FIL
Sbjct: 528 DPLVRDDDLSRFIL 541


>gi|183179650|ref|ZP_02957861.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3]
 gi|183013061|gb|EDT88361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3]
          Length = 389

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 191/391 (48%), Positives = 267/391 (68%), Gaps = 13/391 (3%)

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  + 
Sbjct: 1   MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQ 60

Query: 118 RRDEVREQASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEID 166
             ++V+ +A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+
Sbjct: 61  AMEKVKFRAEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIE 120

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I VA     +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +
Sbjct: 121 INVAVPQMGVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAK 178

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           L++ + +   +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VST
Sbjct: 179 LVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVST 238

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L 
Sbjct: 239 KHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLT 298

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY  LMKTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF A++
Sbjct: 299 EQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATE 358

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +  VIDA YV+  +G+   + D+  FIL
Sbjct: 359 KAGQAFVIDAAYVKARLGELVEDEDLSRFIL 389


>gi|256851127|ref|ZP_05556516.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660551|ref|ZP_05861466.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 115-3-CHN]
 gi|282932234|ref|ZP_06337678.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|297205992|ref|ZP_06923387.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           jensenii JV-V16]
 gi|256616189|gb|EEU21377.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548273|gb|EEX24248.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus
           jensenii 115-3-CHN]
 gi|281303629|gb|EFA95787.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           jensenii 208-1]
 gi|297149118|gb|EFH29416.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus
           jensenii JV-V16]
          Length = 460

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/461 (40%), Positives = 284/461 (61%), Gaps = 36/461 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EIV  L+ YIIGQ +AKRAVAIAL NR+RR QLP  L+ ++ PKN+L+ GPTGVGKT
Sbjct: 5   TPKEIVRLLNEYIIGQNEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDLV  A+ +  + +   V+  A+
Sbjct: 65  EIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124

Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156
             A + ++  LV      N                                R    ++L 
Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAEQPQEEVTDDIRNQRLSVAEQLN 184

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G + D+++ IEV          D+        ++++ L   +M   + K   ++V+   
Sbjct: 185 KGLLEDRQVTIEVEQAPKVNPMGDM---MGQMGMDMNSLLGDMMPKKKVK-RTLAVRDAR 240

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             L++++S +++D DT+++ +I+     GI+F+DE DKI  +    G  VSREGVQRD+L
Sbjct: 241 EVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKDAGQ-VSREGVQRDVL 299

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           P+VEGS+V TKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K+DF  
Sbjct: 300 PIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADFVS 359

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL D E++L+ QY  L++ +G+ L FT+++ID +A++A ++N    +IGARRL T++E++
Sbjct: 360 ILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILEKL 419

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           LED+ +   D++   + I   YV   + D     D+  FIL
Sbjct: 420 LEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460


>gi|260655109|ref|ZP_05860597.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi
           E3_33 E1]
 gi|260630220|gb|EEX48414.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi
           E3_33 E1]
          Length = 462

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/460 (45%), Positives = 292/460 (63%), Gaps = 34/460 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P  IV+ LDRYI+GQ +AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGVG
Sbjct: 9   SLQPAAIVAYLDRYIVGQTEAKRAVAVALRNRVRRRRLPEELAAEITPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E    E  + 
Sbjct: 69  KTEIARRLASLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVEAAVRMVKERMAAEKTDS 128

Query: 126 ASINAEERILDAL----------------------------VGKTATSNTREVFRKKLRD 157
           A+  A ER++D L                             G     +TR+  R+ L +
Sbjct: 129 AASAARERMIDYLVPVKRSGEGGGIPTFMSYLKGVEADEPSQGPEMKDSTRDKMRRLLEE 188

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ D+E++IEV +T           G      N+ E+    M   R K+ R+ V+    
Sbjct: 189 GKLDDREVEIEVQETPPATGMDQSAMGV-----NIGEMLGSFM-PKRTKRRRVKVKDGLR 242

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E+++LID D  H+++I+  ++ GI+F+DE DK+VA ++  G  VSREGVQRDLLP
Sbjct: 243 ILQAEEAEKLIDTDRAHQEAIKSAQDEGIIFIDEIDKVVASENRGGADVSREGVQRDLLP 302

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG +V TKYG + TDH+LFIA+GAF   +P+DL+PE+QGR P+RV L +L K D   I
Sbjct: 303 IVEGCTVPTKYGPVKTDHMLFIAAGAFQSVKPSDLVPELQGRLPLRVELSALRKEDLSKI 362

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+   NL+ QYK L+ TEG+ L FT D ID LA++A   N    +IGARRL T++ERVL
Sbjct: 363 LTEPRHNLLDQYKALLSTEGVELCFTADGIDRLAELAERTNRESENIGARRLHTMLERVL 422

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ED+SFSASD   +TV ID   V   + D  +  D+  ++L
Sbjct: 423 EDVSFSASDYAGQTVTIDRAAVDKKLADIAANVDLRRYLL 462


>gi|223993423|ref|XP_002286395.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana
           CCMP1335]
 gi|220977710|gb|EED96036.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana
           CCMP1335]
          Length = 557

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 194/455 (42%), Positives = 302/455 (66%), Gaps = 21/455 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           T    P E+V+EL+R+I+GQ  AK+AVAIA+RNRWRR+QLP  L  E+ P+N+L++GPTG
Sbjct: 103 TIALRPTEVVTELNRHIVGQSSAKKAVAIAMRNRWRRRQLPPALLKEVTPRNVLMIGPTG 162

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++RR+A L+ APF+KVE TKFTE+GY GR+V+QI+RDL+DV++ + ++ + +++R
Sbjct: 163 CGKTEVARRMASLSDAPFLKVEATKFTEVGYHGRDVDQIVRDLMDVSMALTKKRQTEKLR 222

Query: 124 EQASINAEERILDALVGKTAT---SNTREVFRKKLRDGEISDKEIDIEVADT-------- 172
            +A    EERILD L+G   T    ++R+ FR  LRDG + D E++++V +         
Sbjct: 223 GEAKGLVEERILDILIGPDGTGTNKSSRDSFRSMLRDGLLEDHELEVDVPENLGQGGGKD 282

Query: 173 -SSDISNFDIPGGASVGILNLSELFSKVMGS------GRKKKIRMSVQKCYPELMRDESD 225
               +  F     + + +  +S+L  K+ G          ++ +M++ +    ++  E +
Sbjct: 283 GEGAVVAFGGDASSGMNVQAMSDLIRKLGGGGGQRRGPPTERKKMAISEAREVILEIELE 342

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSS 283
           +L++   + ++++   E  GIVF+DE DKI +    +      S EGVQRDLLPLVEG++
Sbjct: 343 KLLEKVDLKKEAVAAAEESGIVFIDEIDKICSSRDYNSRSADASAEGVQRDLLPLVEGTT 402

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           +STKYG++NTD++LFIASGAFH  +P+D+LPE+QGR P+RV L  L + D   ILT+ E+
Sbjct: 403 ISTKYGNVNTDYMLFIASGAFHAVKPSDMLPELQGRLPIRVELNGLTEEDLYKILTEPEA 462

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           NL+ Q  EL+KTEG+ L F +D++  +A  A  LN TV +IGARRL TVMER++E+ISF 
Sbjct: 463 NLVRQQIELIKTEGVTLSFEDDALREIAKTAALLNRTVENIGARRLHTVMERIMEEISFQ 522

Query: 404 ASDLQ-EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           A++++    VV+  + V+  + D  + +D+  +IL
Sbjct: 523 AAEMEKGDDVVVTKKLVKERLSDVLTTSDLSKYIL 557


>gi|160903347|ref|YP_001568928.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95]
 gi|189043914|sp|A9BID3|HSLU_PETMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|160360991|gb|ABX32605.1| heat shock protein HslVU, ATPase subunit HslU [Petrotoga mobilis
           SJ95]
          Length = 469

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 207/471 (43%), Positives = 306/471 (64%), Gaps = 36/471 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +P+++V +LD YIIGQ++AK+ VAIALRNR RR  L  D+R +++PKNIL++G
Sbjct: 1   MNKIDELTPKKVVEKLDNYIIGQKEAKKQVAIALRNRIRRLSLSEDVRKDVIPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA +A APF+KVE T+FTE+GYVG+NVE ++R+LVD ++N+V++   +
Sbjct: 61  STGVGKTEIARRLAEVANAPFVKVEATRFTEVGYVGKNVESMVRELVDSSVNMVKKEMME 120

Query: 121 EVREQASINAEERILDALVGKTATS----------------------------------N 146
           EV+++A    EERI++ LV     +                                   
Sbjct: 121 EVKDKAQRLVEERIVEVLVPSKKRAKAQPSFMDVMQLFNQNAEYSQNKDYDENEDENIRR 180

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
            RE   +KLR+GE+ D EI++EV + SS +     P    +G +   E+F  +M   +KK
Sbjct: 181 RREELLEKLRNGELEDVEIEVEVEEQSSPMFAGLGPELEDMG-IQFGEMFQNLM-PKKKK 238

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
           + RM + +    L   ES++LID D + ++ +   EN GI+F+DE DKI ++   +G  V
Sbjct: 239 RRRMKISEARKVLEPIESEKLIDQDKLIQEGVSRAENSGIIFIDEIDKITSKGVSSGPDV 298

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           SREGVQRDLLP+VEG++V TKYGSI+TD+ILFIA+GAF  ++P+DL+PE+QGRFP+R  L
Sbjct: 299 SREGVQRDLLPIVEGTTVMTKYGSISTDYILFIAAGAFSEAKPSDLIPELQGRFPIRAEL 358

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L K DF  ILT  ++ ++ QY+ L++T+G+ ++FTED ++ +AD+A  LN  V +IGA
Sbjct: 359 SDLTKEDFIRILTQPKNAILKQYQYLLQTDGVKIEFTEDGVERMADIAFELNEKVENIGA 418

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL TV+E+VLE++SF A    E  + ID+ YV L +G    + D+  +IL
Sbjct: 419 RRLYTVVEKVLEEVSFEAPASGEWELKIDSNYVDLRLGKVYGDEDLREYIL 469


>gi|38046590|gb|AAR09158.1| ATP-dependent hslVU protease [Mannheimia varigena]
          Length = 399

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 195/402 (48%), Positives = 272/402 (67%), Gaps = 13/402 (3%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           DLR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRD
Sbjct: 1   DLRQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 60

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN----------TREVFRKKL 155
           L DV++ +VR+   ++ + +A   AE+RILD L+                 TR+ FRKKL
Sbjct: 61  LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNQSTRQAFRKKL 120

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R+G++ DKEI+I+VA   S       P G       L  LF   M   + KK +M ++  
Sbjct: 121 REGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDA 177

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDL
Sbjct: 178 LKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDL 237

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF 
Sbjct: 238 LPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKDDFE 297

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+ A  +N    +IGARRL TV+ER
Sbjct: 298 RILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVNEKTENIGARRLHTVLER 357

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++ ISF AS+ + + +VID  YV   + D     D+  FIL
Sbjct: 358 LMDGISFDASERRGEKIVIDENYVSEALNDVVENEDLSRFIL 399


>gi|116514249|ref|YP_813155.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275019|sp|Q04A05|HSLU_LACDB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|116093564|gb|ABJ58717.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 464

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/460 (40%), Positives = 276/460 (60%), Gaps = 30/460 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124

Query: 128 INAEERILDAL----------------------------VGKTATSNTREVFRKKLRDGE 159
             A + ++  L                            + +     T E+  ++L   E
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184

Query: 160 ISDK--EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
             D+    + EV          +  G     +          M   +K K  + V +   
Sbjct: 185 KLDRGLLENEEVIIEVEQAPKANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTLPVGQARK 244

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQRD+LP
Sbjct: 245 LLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQRDILP 304

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K DF  I
Sbjct: 305 IVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDDFVRI 364

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L D +++L+ QY  L+K +G+ L FT +++D +A++A  +N    +IGARRL T++E++L
Sbjct: 365 LKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLATILEKLL 424

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E++ +   D++   + I   YV   + D     D+  FIL
Sbjct: 425 EEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464


>gi|57236972|ref|YP_178773.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           RM1221]
 gi|62286707|sp|Q5HVB2|HSLU_CAMJR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|57165776|gb|AAW34555.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           RM1221]
 gi|315058077|gb|ADT72406.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 439

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 291/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G + +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|57167683|ref|ZP_00366823.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli
           RM2228]
 gi|305433190|ref|ZP_07402346.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           coli JV20]
 gi|57020805|gb|EAL57469.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli
           RM2228]
 gi|304443891|gb|EFM36548.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           coli JV20]
          Length = 439

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/444 (41%), Positives = 295/444 (66%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++ +  
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESVIEIEISQS-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  + +++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAAEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGSSV TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY++L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYEQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASKANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|219113601|ref|XP_002186384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583234|gb|ACI65854.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 448

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/448 (45%), Positives = 304/448 (67%), Gaps = 17/448 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+V ELDR+I+GQ DAKRAVAIA+RNRWRRQQLP DLR E+ P+N+LLVGPTGVGK
Sbjct: 1   MRPSEVVHELDRHIVGQHDAKRAVAIAMRNRWRRQQLPEDLRKEVTPRNVLLVGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + RR+A+L  APF+KVE TKFTE+GY GR+V+QIIRDL+DV++ + R+   +++R QA
Sbjct: 61  TEVMRRMAKLNDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVSMQLTRKVWTEKLRSQA 120

Query: 127 SINAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+RILD L G        T  +  R+ FR  LR G + D+EI++EV     +    
Sbjct: 121 RAMVEDRILDLLTGPAQQGKGGTGDARGRDSFRDMLRQGMLDDQEIEVEVPQGDRNPDVG 180

Query: 180 DIPG-GASVGILNLSELFSKVMGSGRKKK-----IRMSVQKCYPELMRDESDRLIDMDTV 233
              G G S  I+ +S+L+ ++ G+   KK      ++ + +    ++  E ++L++   +
Sbjct: 181 AGGGDGTSPNIVAMSDLWQRMSGAQGGKKTPSERKKLPISEAREVILEVELEKLLENVDM 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +++IQ VE  GIVF+DE DKI +     S      S EGVQRDLLPL+EG++++TKYG+
Sbjct: 241 KKEAIQAVEESGIVFIDEIDKICSARDSFSTRSADASAEGVQRDLLPLIEGTTINTKYGN 300

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           +NTD+ILF+A+GAFH  +P+DLLPE+QGR P+RV LK L + D   ILT+  +NL+ Q  
Sbjct: 301 VNTDYILFVAAGAFHSVKPSDLLPELQGRLPIRVELKGLTEDDLYRILTEPVANLVRQQV 360

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           EL+ +EG+ L+F +D++  +A +A  LN T+ +IGARRL TVMER++E++SF A++L + 
Sbjct: 361 ELIGSEGVSLEFDDDAVREIARMAALLNRTIENIGARRLHTVMERIMEELSFEAAELDKG 420

Query: 411 TVV-IDAEYVRLHIGDFPSETDMYHFIL 437
            ++ +D   V+  + +   ++D+  +IL
Sbjct: 421 AILRVDKALVQTRLEESTKKSDLSKYIL 448


>gi|121612676|ref|YP_001000362.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005308|ref|ZP_02271066.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|166221474|sp|A1VZ21|HSLU_CAMJJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|87249356|gb|EAQ72316.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 439

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 291/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G + +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|86151777|ref|ZP_01069991.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841406|gb|EAQ58654.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 439

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNHQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|86149872|ref|ZP_01068101.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86153464|ref|ZP_01071668.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88597123|ref|ZP_01100359.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562307|ref|YP_002344086.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315124171|ref|YP_004066175.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|11133091|sp|Q9PHL0|HSLU_CAMJE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|85839690|gb|EAQ56950.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843190|gb|EAQ60401.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88190812|gb|EAQ94785.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360013|emb|CAL34803.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315017893|gb|ADT65986.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315926779|gb|EFV06153.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 439

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|284925920|gb|ADC28272.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 439

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 293/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|205355512|ref|ZP_03222283.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346746|gb|EDZ33378.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 439

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESAIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + LDF +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|282856241|ref|ZP_06265524.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter
           piscolens W5455]
 gi|282586000|gb|EFB91285.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter
           piscolens W5455]
          Length = 471

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/465 (43%), Positives = 302/465 (64%), Gaps = 35/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  P  IV  LDRYIIGQ+ AKRAVA+ALRNR RR++LP DL  E+ PKNIL+VGPTGVG
Sbjct: 9   NLVPSAIVQYLDRYIIGQEKAKRAVAVALRNRLRRRKLPEDLAQEIAPKNILMVGPTGVG 68

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V++     V+  
Sbjct: 69  KTEIARRLADLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAMQMVKKRMIAGVQSV 128

Query: 126 ASINAEERILDALVGKTATSN---------------------------------TREVFR 152
           A  +A+ER++D L+    +S+                                 TRE   
Sbjct: 129 AFEHAQERLVDYLLPVRKSSSAAGIPTFLNYLKKEQAEQPEDAAPEESPAVRQSTRERML 188

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
             L+ G++ ++E++I+V ++SS I++F       +G +N+SE+   +M   + KK RM V
Sbjct: 189 NMLKGGKLDEREVEIDVQESSSPIASFGNGEMGGIG-INISEMLGGMM-PKKSKKRRMKV 246

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +     L  +E+++LID++   ++++   +  GI+F+DE DKIV+R  G G  VSREGVQ
Sbjct: 247 KDALRVLQAEEAEKLIDIEAATQEALDKAQQEGIIFIDEIDKIVSRGRGGGPDVSREGVQ 306

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG SV+TKYG + TDHI FIA+GAFH ++P+DL+PE+QGR P+RV L +L K 
Sbjct: 307 RDLLPIVEGCSVTTKYGQVKTDHIFFIAAGAFHDAKPSDLVPELQGRLPIRVELTALGKE 366

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           + R IL +   +LI Q   L++TEG+ L FT+++++ +A +A  +N  + +IGARRL T+
Sbjct: 367 ELRRILIEPRHSLIHQSVALIETEGLELRFTDEAVEEIAAMAERMNLEMENIGARRLHTI 426

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE+ISFSA +   + + ID  +V   +     + D+  ++L
Sbjct: 427 LEQLLEEISFSAPERTGEAIEIDKSFVVKKLEPLVGDKDLRRYLL 471


>gi|154149128|ref|YP_001406619.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153805137|gb|ABS52144.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           hominis ATCC BAA-381]
          Length = 439

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 197/442 (44%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ++AK+ +AIALRNRWRR +L  ++R+E+MPKNIL++G TGVGKT
Sbjct: 3   TPKKIVEILDDYIIGQKNAKKTIAIALRNRWRRLKLDEEMRNEVMPKNILMIGSTGVGKT 62

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRL+++ G PF+KVE +K+TE+G+VGR+VE ++RDL   ++N+V+    ++ RE+  
Sbjct: 63  EIARRLSKMFGLPFVKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKNEELEKNREKID 122

Query: 128 INAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              E+RIL  ++             A + + E  R+K R+G I D        +   D S
Sbjct: 123 EYIEKRILQKVLPPLPRGASDEKVEAYNKSYEKMREKFRNGLIDDLI-----IEIEIDES 177

Query: 178 NFDIPGGASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           + +        + N+ E F KV+  S +K K  + ++     L  + SD++++ D +  +
Sbjct: 178 SLESNPNLPPEMANMQESFIKVIGISTKKTKKELKIKDAKVALKNEASDKVLNKDRIKAE 237

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +I+  EN GI+F+DE DKI      +G    S+EGVQRDLLP+VEGSSV+TKYG+INTDH
Sbjct: 238 AIRRAENEGIIFIDEIDKIAVSSGNSGRNDPSKEGVQRDLLPIVEGSSVNTKYGNINTDH 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++    ILT  +++LI QY  L+ T
Sbjct: 298 ILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYEILTKPKNSLIKQYMALLAT 357

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F+ED I ++A  A   N  + DIGARRLQT+ME+VLED+SFSA +     V ID
Sbjct: 358 EGLKLKFSEDGIKSIAKFAALANEKMEDIGARRLQTIMEKVLEDLSFSADEHAGTDVKID 417

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            + V   + +   + D+  +IL
Sbjct: 418 EKTVAQKLENIVLDEDLAKYIL 439


>gi|283956076|ref|ZP_06373563.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792396|gb|EFC31178.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 439

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + LDF +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTEKLELDFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|157414938|ref|YP_001482194.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|172047095|sp|A8FL80|HSLU_CAMJ8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|157385902|gb|ABV52217.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747577|gb|ADN90847.1| ATP-dependent hsl protease ATP-binding subunit hslU [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931859|gb|EFV10814.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 439

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS++ TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNIQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|294102500|ref|YP_003554358.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium
           colombiense DSM 12261]
 gi|293617480|gb|ADE57634.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/460 (44%), Positives = 310/460 (67%), Gaps = 29/460 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV  LDRYI+GQ+ AKRAVAIALRNR RR+ LP DL +E+ PKNIL+VGPTGVG
Sbjct: 10  DLTPRMIVECLDRYIVGQEKAKRAVAIALRNRMRRRNLPRDLANEVAPKNILMVGPTGVG 69

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APF+KVE TKFTE+GYVGR+V+ +IRDLV+ A+ +V+  + +EV+  
Sbjct: 70  KTEIARRLADLVLAPFVKVEATKFTEVGYVGRDVDSMIRDLVETAVAMVKRVKIEEVQGP 129

Query: 126 ASINAEERILDALVGKTAT----------------------------SNTREVFRKKLRD 157
           A   AE R++DAL+ +                                +TR      L+ 
Sbjct: 130 AEERAEWRLVDALLPRPERKTSMPDFMKIFSGKEAEETPPQEEDTIRESTRNKVYALLKA 189

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           G++ ++E+++EVA+++S         G     +N++E+ S ++   + KK RM V     
Sbjct: 190 GKLDEREVELEVAESASMGIPILGGAGMDSMGMNINEMLSGLL-PKKTKKRRMKVSDGKK 248

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L  +E+++LIDM++V R+++   +  GI+F+DE DK+VAR + +G  VSREGVQRDLLP
Sbjct: 249 LLQAEEAEKLIDMESVAREALDKAQEEGIIFIDEIDKVVARGTSSGPDVSREGVQRDLLP 308

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEGS+V TKYG++ TDHILFIA+GAF   +P+DL+PE+QGRFP+RV L+ L + +   I
Sbjct: 309 IVEGSTVQTKYGTVKTDHILFIAAGAFSSVKPSDLVPELQGRFPIRVELQPLGREELARI 368

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + E++LI QY+ L+ TE I + F+ED+I+ +A +A  +N+ + +IGARRL T++E++L
Sbjct: 369 LVEPENSLIKQYQALLSTERIEVRFSEDAIEEIAAMAEKMNAEMENIGARRLHTMVEQLL 428

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+ISF+A + Q + V I+A++V+  +     +TD+  ++L
Sbjct: 429 EEISFTAPERQGEVVDINAQFVKERLSPLMEDTDLRKYLL 468


>gi|89895295|ref|YP_518782.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334743|dbj|BAE84338.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 435

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/422 (48%), Positives = 290/422 (68%), Gaps = 29/422 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PRE V ELDRYI+GQ  AKRAVAIALRNR+RR  LP  +++E++PKNIL++GPTGVG
Sbjct: 3   QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+  + +EV  Q
Sbjct: 63  KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122

Query: 126 ASINAEERILDALVGKTATSNT--------------------------REVFRKKLRDGE 159
           A+  AE+R+   LV      N                           R   R++L  GE
Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + ++ I++EV D    + +F   G       NL ++ + ++   R K  +++V++    L
Sbjct: 183 LDEQVIEVEVEDNQPLLPDFLGTGM--EINTNLQDMMAGMLPKKRHK-RKVTVREARRIL 239

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             +E+ +LID D   +++I+ VE  G+VFLDE DKI  RD  +G  VSR GVQRD+LP+V
Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+  DF+ ILT
Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +S+LI QY  L++TEGI ++FTE++ID LA VA  +NS   +IGARRL T++ERVLE+
Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419

Query: 400 IS 401
           +S
Sbjct: 420 LS 421


>gi|149194254|ref|ZP_01871351.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135429|gb|EDM23908.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 437

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 288/445 (64%), Gaps = 20/445 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y++GQ+DAK+ +AIALRNR+RR QLP + +D+++PKNIL++GPTGV
Sbjct: 1   MNMTPKEIVKYLDEYVVGQRDAKKTIAIALRNRYRRMQLPKEWQDDILPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE +IRDLV+ + N+VR    +  + 
Sbjct: 61  GKTEIARRMAKMMKVPFVKVEASKYTEVGFVGRDVESMIRDLVNNSYNLVRAEMEERSKS 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           Q        I   L+                 T E  ++K++ GE+   +I IEV +T+ 
Sbjct: 121 QIEEEIINEITRKLIPPLPKNAPEEKLKDYEKTFEKMKEKVKKGEVDHLKITIEVDETNQ 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVM--GSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                 +       ++   E   K++   +  K+K  ++V++    L +  +++ I+ D 
Sbjct: 181 ------LDDNLPPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKQAAEKFINKDE 234

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + +++++  EN GI+F+DE DKI A         S+EGVQRDLLP+VEGS+V+TKYG +N
Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA-TGNTRQDPSKEGVQRDLLPIVEGSTVNTKYGYVN 292

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT  + +LI QY++L
Sbjct: 293 TDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQKL 352

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ EG+ L F E ++  +A  A   N    DIGARRL TV+E+VLEDI+F+A + ++K  
Sbjct: 353 LEVEGVNLVFEESALKEIAKYAFLANEKTEDIGARRLHTVVEKVLEDINFNAEEYKDKDF 412

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           +ID  YV+  + D     ++  +IL
Sbjct: 413 IIDEGYVKSKLEDIVENEEISKYIL 437


>gi|34557656|ref|NP_907471.1| ATP-dependent protease ATP-binding subunit HslU [Wolinella
           succinogenes DSM 1740]
 gi|34483373|emb|CAE10371.1| CLPY PROTEIN [Wolinella succinogenes]
          Length = 440

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 190/442 (42%), Positives = 294/442 (66%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV+ LD YIIGQ++AK+ VAIALRNR+RR +L  ++++E++PKNIL++G TGVGK
Sbjct: 1   MTPKEIVAYLDEYIIGQKEAKKRVAIALRNRYRRMKLSKEMQEEVIPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+AR+ G PFIKVE +K+TE+G+VGR+VE ++RDLV  AI +V+E  +++ +E  
Sbjct: 61  TEIARRMARMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVGAAIALVKEEHKEKNQEGI 120

Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                E+I+  L+                ++ E  ++++ +GE+   +I+I+    S D 
Sbjct: 121 DAYVIEKIVQKLIPPLPKGASEAKMQEYESSYERMKQRVINGEVDHLKIEIQPPKKSVDF 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           S  ++P        +L++ F        + K  ++V++    L  + S+ L+DM+T+  +
Sbjct: 181 SEGNVPPEIVRIQESLAKAFLN--SQKEEMKKEVTVKEAKELLKIEASEALLDMETIKAE 238

Query: 237 SIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  E  GI+F+DE DKI  ++ S +    S+EGVQRDLLP+VEGS+VSTK+G I TD+
Sbjct: 239 GLRRAEEEGIIFIDEMDKIAVSQGSSSRQDPSKEGVQRDLLPIVEGSTVSTKHGQIKTDY 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT T+++++ QY  L++T
Sbjct: 299 ILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEETLYKILTQTKNSILKQYIALLET 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L F +++I ALA ++   N    DIGARRL TV+E+VLE+ISF A + Q + VVI 
Sbjct: 359 EGVELVFEDEAIRALAKLSQRANEKTEDIGARRLHTVIEKVLEEISFEAEEHQGEKVVIT 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            E V   + D     D+  +IL
Sbjct: 419 KERVHERLDDLVENVDVARYIL 440


>gi|153951339|ref|YP_001398382.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166221473|sp|A7H4F2|HSLU_CAMJD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|152938785|gb|ABS43526.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 439

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/444 (41%), Positives = 293/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLTNAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRSENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+   F  ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKAFYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + LDF  ++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELDFDNEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +GD     D+  +IL
Sbjct: 416 VDKKMVEEKLGDIIENKDLARYIL 439


>gi|313892602|ref|ZP_07826189.1| ATP-dependent protease HslVU, ATPase subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313118999|gb|EFR42204.1| ATP-dependent protease HslVU, ATPase subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 454

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 199/460 (43%), Positives = 296/460 (64%), Gaps = 31/460 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV  LD+YIIGQ++AK++VAIALRNRWR  +L  +++ E+ PKNILL+GPT
Sbjct: 1   MIETLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA L  APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++    ++
Sbjct: 61  GVGKTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKL 120

Query: 123 REQASINAEERILDALVGKTATSN-------------------------TREVFRKKLRD 157
            + +   A ++I + L       +                          RE F +++R+
Sbjct: 121 GKNSQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRN 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ ++ I+IEV D        D        I+ ++++ S +M    KKK          
Sbjct: 181 GEMDERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAA-KK 234

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
               + +D ++DM+TV   +I+  +  GI+F+DE DKI  +    G GVSREGVQRD+LP
Sbjct: 235 IFAEEAADEMLDMETVKEKAIEAAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILP 294

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R I
Sbjct: 295 IVEGATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKI 354

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L +    LILQY  L++TEG+ ++F + ++DA++++A  +N+   +IGARRL T++E+VL
Sbjct: 355 LIEPRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVL 414

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           EDISF A D+ EK +V+D  YVR  +G      D+ ++IL
Sbjct: 415 EDISFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454


>gi|298736227|ref|YP_003728753.1| heat shock protein HslU [Helicobacter pylori B8]
 gi|298355417|emb|CBI66289.1| Heat shock protein HslU [Helicobacter pylori B8]
          Length = 443

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|329121220|ref|ZP_08249847.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister
           micraerophilus DSM 19965]
 gi|327470154|gb|EGF15617.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister
           micraerophilus DSM 19965]
          Length = 454

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 199/460 (43%), Positives = 297/460 (64%), Gaps = 31/460 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +PR+IV  LD+YIIGQ++AK++VAIALRNRWR  +L  +++ E+ PKNILL+GPT
Sbjct: 1   MIETLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA L  APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++    ++
Sbjct: 61  GVGKTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKL 120

Query: 123 REQASINAEERILDALVGKTATSN-------------------------TREVFRKKLRD 157
            + +   A ++I + L       +                          RE F +++R+
Sbjct: 121 GKNSQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRN 180

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
           GE+ ++ I+IEV D        D        I+ ++++ S +M    KKK          
Sbjct: 181 GEMDERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAA-KK 234

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
               + +D ++DM+TV   +I++ +  GI+F+DE DKI  +    G GVSREGVQRD+LP
Sbjct: 235 IFAEEAADEMLDMETVKEKAIEVAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILP 294

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R I
Sbjct: 295 IVEGATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKI 354

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L +    LILQY  L++TEG+ ++F + ++DA++++A  +N+   +IGARRL T++E+VL
Sbjct: 355 LIEPRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVL 414

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           EDISF A D+ EK +V+D  YVR  +G      D+ ++IL
Sbjct: 415 EDISFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454


>gi|328875240|gb|EGG23605.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
          Length = 1249

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/430 (43%), Positives = 282/430 (65%), Gaps = 4/430 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P+EIVSELD+YIIGQ +AKRAV+IALRNRWRR++L A ++ ++ PKNIL++GPTGVG
Sbjct: 186 KLTPKEIVSELDKYIIGQAEAKRAVSIALRNRWRRKRLDASIKQDVFPKNILMIGPTGVG 245

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +  APFIKVE TK+TE+G+ G +V+ IIRDL++V+I+ +++   +  +E 
Sbjct: 246 KTEIARRLANIVNAPFIKVEATKYTEVGFHGPDVDSIIRDLIEVSIHNIKQKIANLHKET 305

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             +  E+ I+ +LVG    + + E   K  R+  + + +I+++V  ++      D     
Sbjct: 306 IDMEIEKEIISSLVGPDFLNRSYEDLVKLYREKALENIQIELDVPSSTDTKLQLDDENLI 365

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +  L  +  +V  S + KK  ++V +    L + + ++LI    V + +IQ  E  G
Sbjct: 366 PFAVSKLFNV--QVDKSNQIKKRIVTVSEARTILEKIQKEKLIVQQDVTKLAIQSAEQNG 423

Query: 246 IVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           IVFLDE DKI         G   S +GVQRDLLP++EG +V+TKYG I+T  ILFIASGA
Sbjct: 424 IVFLDEIDKICTPKENTHRGGDASTDGVQRDLLPIIEGCNVNTKYGMIDTSRILFIASGA 483

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH S+P+DL+ E+QGR P+RV LK L+++DF  ILT+ ++N I Q K L++TE I L+FT
Sbjct: 484 FHSSKPSDLISELQGRLPIRVELKPLDQNDFYRILTEPKNNQIEQQKALLQTEDITLEFT 543

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            DS+  ++ +A + N+ V +IGARRL  ++E+++E+ SF+  D + KTV I  + V+ H+
Sbjct: 544 IDSLREVSRIAFDANAQVQNIGARRLHGIIEKIVEEYSFNCDDHKGKTVTITEDSVKKHL 603

Query: 424 GDFPSETDMY 433
                +TD  
Sbjct: 604 SQLLFKTDFS 613


>gi|208434438|ref|YP_002266104.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27]
 gi|238065799|sp|B5Z6N9|HSLU_HELPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|208432367|gb|ACI27238.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27]
          Length = 443

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 292/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|317180292|dbj|BAJ58078.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F32]
          Length = 443

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 190/445 (42%), Positives = 292/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDNREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D +T+
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGETI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|261838240|gb|ACX98006.1| heat shock protein, ATP-binding subunit [Helicobacter pylori 51]
          Length = 443

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 292/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   WNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSMLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D +++
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G+VF+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVVFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|315639032|ref|ZP_07894202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           upsaliensis JV21]
 gi|315480944|gb|EFU71578.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter
           upsaliensis JV21]
          Length = 439

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/444 (41%), Positives = 292/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR +L  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMKLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E++IL+ L+           +    N+ E  R KL++G++ +  I++E++    
Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQNSLEKMRTKLKNGDLDESVIELEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  + SD+++D + + 
Sbjct: 179 ---MFDTNPNLPPEMSAMQDMVKVIGVGSKKVKKEMKIKDAKNTLKSEASDKILDTENIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++ VEN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGSSV TK G + T
Sbjct: 236 SEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY EL+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYVELL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K+ V
Sbjct: 356 KTEDLSLEFDDEAIRQIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKSFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +       D+  +IL
Sbjct: 416 VDKKMVEEKLSSIVENKDLARYIL 439


>gi|317012332|gb|ADU82940.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Lithuania75]
          Length = 443

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 289/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGVRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|15645143|ref|NP_207313.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori 26695]
 gi|11132784|sp|O25254|HSLU_HELPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|2313631|gb|AAD07584.1| heat shock protein (hslU) ORF1 [Helicobacter pylori 26695]
          Length = 443

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|322378787|ref|ZP_08053216.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
 gi|322380636|ref|ZP_08054788.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5]
 gi|321146958|gb|EFX41706.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5]
 gi|321148817|gb|EFX43288.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
          Length = 446

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 281/445 (63%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD YIIGQQDAK+ +AIALRNRWRR QL  +L++E+MPKNIL++G TGV
Sbjct: 7   LNLTPQEIVRYLDDYIIGQQDAKKMIAIALRNRWRRLQLSKELQEEVMPKNILMIGSTGV 66

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV  +I++V    +++ + 
Sbjct: 67  GKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVVASIHLVENEEKEKNQA 126

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      ERI   L+           +   +   E  ++K+R   + D++I IE+     
Sbjct: 127 KIEDLIIERITKKLLPPLPSGVGKDKQQEYALNFEKTKQKVRSHVLDDQKIQIELDKR-- 184

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +        I+ + E  +K++  G +K    M++++    L  D S  ++DM+ V
Sbjct: 185 ---GVEGDFNMPPEIIKVQESLTKILNKGGEKVSKEMTIKEAKEALRHDVSQAILDMEQV 241

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            R+ +Q     G++F+DE DKI      G     S+EGVQRDLLP+VEGS++ TKYG I 
Sbjct: 242 QREGVQRAAQCGVIFIDEIDKIAVGSKEGRTQDPSKEGVQRDLLPIVEGSTIQTKYGPIA 301

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL++     ILT  +S+LI QY+ L
Sbjct: 302 TDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLSEEIMYEILTRPKSSLIKQYQAL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ E + L F  +++  LA  +   N    DIGARRL T +E+VLEDISF+A+    + V
Sbjct: 362 LEVENVDLAFEPEALRELARFSYLANQKTEDIGARRLHTTLEKVLEDISFNATAYAGQKV 421

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           V+  + V   + D   + D+  FIL
Sbjct: 422 VVSKKDVSQTLQDLVEDVDLARFIL 446


>gi|317181836|dbj|BAJ59620.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F57]
          Length = 443

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +T+
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSETI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|308061843|gb|ADO03731.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Cuz20]
          Length = 443

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 289/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIVFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|78777574|ref|YP_393889.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498114|gb|ABB44654.1| Heat shock protein HslU [Sulfurimonas denitrificans DSM 1251]
          Length = 442

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/444 (43%), Positives = 289/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+I QQ+AK+ +A+ALR R+RR QL  +L+ ++ PKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDEYVISQQNAKKTIALALRTRYRRMQLSPELQSDITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I IV+  + +E RE
Sbjct: 61  GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVASIAIVKAEKEEENRE 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +       +I++ L+                    V  +++  GE+ DK I +EV     
Sbjct: 121 KIDNYILNKIVEKLLPPLPLGASESKKDDYQRLLSVMEERVLSGEMDDKIIQLEVQKIHV 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + ++ ++P   +    + S +FS++  +    K  +SV+     L  + S +LID   ++
Sbjct: 181 EFNDTNLPPEMAKVQESFSRVFSQM--NKEDNKKELSVKDAKIILRDEASAKLIDSTHIN 238

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+FLDE DKI   +   G    S+EGVQRDLLP+VEGSSVSTKYG+INT
Sbjct: 239 VEALRRAENGGIIFLDEIDKIAISEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTINT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+ +P+DL+PE+QGRFP+RV L+SLN+     ILT T+++L+ QY+ L+
Sbjct: 299 DHILFIAAGAFHLCKPSDLIPELQGRFPLRVELESLNEETLYKILTQTKNSLLRQYEALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             EG+ L F +++I A+A +A   N    DIGARRL TV+E++LED+SFSA++ ++K  +
Sbjct: 359 SVEGMKLTFEDEAIKAIAKLAHRANEIAEDIGARRLHTVIEKILEDVSFSANEYKDKEFI 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           + ++ V   +       D+  +IL
Sbjct: 419 VTSKLVHEKLDTIVENDDLSRYIL 442


>gi|210134717|ref|YP_002301156.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori P12]
 gi|238065798|sp|B6JL98|HSLU_HELP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|210132685|gb|ACJ07676.1| heat shock protein ATP-binding subunit [Helicobacter pylori P12]
          Length = 443

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|224373289|ref|YP_002607661.1| ATP-dependent protease ATP-binding subunit HslU [Nautilia
           profundicola AmH]
 gi|223588434|gb|ACM92170.1| heat shock protein HslVU, ATPase subunit HslU [Nautilia
           profundicola AmH]
          Length = 437

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 291/445 (65%), Gaps = 20/445 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +P++IV+ LD YI+GQ+DAK+ +AIALRNR RR QLP + +D++MPKNIL++GPTGV
Sbjct: 1   MSMTPKQIVAYLDEYIVGQKDAKKTIAIALRNRHRRMQLPKEWQDDIMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE +IRDLV+ ++N+VR    +  +E
Sbjct: 61  GKTEIARRMAKMMKLPFVKVEASKYTEVGFVGRDVESMIRDLVNNSMNLVRAEMEENSKE 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           Q   N  E I   L+           +    ++ E  +++++ GE+   +I IE+ +   
Sbjct: 121 QIEENVIEEITKKLLPPLPKNAPEQKQIEYQHSFEKMKERVKKGEVDHLKITIEIEELPE 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVM--GSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              N          ++   E   K++   +  K+K  ++V++    L ++ ++++I  + 
Sbjct: 181 GDDNL------PPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKEAAEKVISKED 234

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + +++++  EN GI+F+DE DKI A         S+EGVQRDLLP+VEGS+V+TKYG +N
Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA-TGNQRQDPSKEGVQRDLLPIVEGSTVNTKYGYVN 292

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++     ILT  + +LI QY++L
Sbjct: 293 TDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQKL 352

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ E + L FTE+++  +A  A   N    DIGARRL TV+E+VLEDI+F A +   K  
Sbjct: 353 LEVEQVNLIFTEEALREIARYAFLANEKTEDIGARRLHTVIEKVLEDINFEADEYAGKDF 412

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
           VID  YV+  + D     ++  +IL
Sbjct: 413 VIDEAYVKSKLDDIVESEEITKYIL 437


>gi|217032969|ref|ZP_03438442.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128]
 gi|216945298|gb|EEC23973.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128]
          Length = 438

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/443 (41%), Positives = 290/443 (65%), Gaps = 17/443 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGVGK
Sbjct: 1   MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    +++++++ 
Sbjct: 61  TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                E+I   L+               +N+    ++++  GE+  +EI+IEV   S   
Sbjct: 121 EEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS--- 177

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +  
Sbjct: 178 --IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKM 235

Query: 236 DSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI T+
Sbjct: 236 EGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTE 295

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L+K
Sbjct: 296 HILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQALLK 355

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V I
Sbjct: 356 VEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSVTI 415

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
             E V+  + D  ++ ++  +IL
Sbjct: 416 TKELVQSKLEDLVADENLVKYIL 438


>gi|167469785|ref|ZP_02334489.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           FV-1]
          Length = 377

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 192/377 (50%), Positives = 259/377 (68%), Gaps = 13/377 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD +IIGQ  AKRAVAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    +++R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +            TR+ FRKKLR+G++ DKEI+I++A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F  +    ++K  ++ +++    L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQSMFQNI-AGQKQKPRKIKIKEALKLLIEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QQAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF VS P+DL+PE+QGR P+RV L++L   DF  ILT+  ++L  QYK LM 
Sbjct: 301 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMA 360

Query: 355 TEGIILDFTEDSIDALA 371
           TEG+ ++FT + I  +A
Sbjct: 361 TEGVTIEFTREGIRKIA 377


>gi|32265808|ref|NP_859840.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           hepaticus ATCC 51449]
 gi|32261857|gb|AAP76906.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter hepaticus
           ATCC 51449]
          Length = 444

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/446 (42%), Positives = 282/446 (63%), Gaps = 13/446 (2%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  N +P++IV  LD YIIGQ DAK+AVAIALRNR+RR +L  +++DE+ PKNIL++G T
Sbjct: 1   MKENMTPKQIVEYLDGYIIGQNDAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGST 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  ++N+V    R   
Sbjct: 61  GVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQRA 120

Query: 123 REQASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           + Q +    E+I   L+            +    +    ++++  GE+ D  I+IE++  
Sbjct: 121 QAQINDYIIEKITQKLLPPLPSGVSEAKKSEYDMSFTKMKQRVIKGEVDDLMIEIEISKK 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              IS F+        I     +F  +  S  K K  MSV++    L  +  + ++D ++
Sbjct: 181 P--ISQFNDENMPPDMIKVQESIFKVLNVSQDKIKKEMSVKEAKEALAYEAIESVLDAES 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +  + ++  +  G++F+DE DK+      G+    S+EGVQRDLLP+VEGS V+TKYG I
Sbjct: 239 IRAEGLRRAQENGVIFIDEIDKVAVGSKDGSRQDPSKEGVQRDLLPIVEGSVVNTKYGQI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L  L++     ILT T+S+L+ QY+ 
Sbjct: 299 KTDYILFIAAGAFHLSKPSDLIPELQGRFPLRVELSMLDEESLYQILTQTKSSLLRQYQL 358

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+ TE I L+F++++I  LA ++ N N    DIGARRL T +ERVLEDISF     + K 
Sbjct: 359 LLDTEDIRLEFSDEAIRELARLSHNANQRTEDIGARRLHTTIERVLEDISFDVDTYKGKE 418

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           V I  + VR  +GD     D+  +IL
Sbjct: 419 VEITGDMVRERLGDLVENIDLARYIL 444


>gi|255089867|ref|XP_002506855.1| predicted protein [Micromonas sp. RCC299]
 gi|226522128|gb|ACO68113.1| predicted protein [Micromonas sp. RCC299]
          Length = 500

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/449 (43%), Positives = 295/449 (65%), Gaps = 12/449 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           ++ T   +P + V  LDR+I+GQ DAKRA A+ALRNRWRR ++   LRDE++PKNIL++G
Sbjct: 52  LEGTDGLTPSKTVELLDRFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIG 111

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I+RRLA++  +PF+KVE TKFTE+G+ GR+V+QII+DLVD A++I +   R 
Sbjct: 112 PTGCGKTEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAMHITKTKLRQ 171

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
              ++ +   E +I+D + G+T+   TR+ F +  RDG +  + I++E+ +   +    +
Sbjct: 172 RFEKEVNEVVENKIVDFMCGETSGDVTRDAFLQMYRDGALDHRVIELELPEGGGEGKGME 231

Query: 181 IPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           + G   +     L           R  K RM+V++C P +   E +RLI+ D V +++++
Sbjct: 232 LGGSNQMTPERKLIPGGRLGGRGARMTKKRMTVRECRPLIEEMEYERLINSDVVVKEALK 291

Query: 240 MVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            VEN GIVFLDE DKIV+     +G   S EGVQRDLLP++EGS V+TK+G++NTD ILF
Sbjct: 292 AVENDGIVFLDEIDKIVSSSDHRHGADASSEGVQRDLLPIIEGSVVATKHGNVNTDQILF 351

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAFH  +P+D+L E+QGR P++V LK L   D   ILT+ E+N++ Q + L++TEG+
Sbjct: 352 IASGAFHQCKPSDMLAELQGRLPIKVELKGLTADDLLRILTEPEANVLKQQRALLETEGV 411

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-------- 410
            L FT++++  +A+++  +N TV +IGARRL TV+E+++E++SF A +            
Sbjct: 412 ELSFTDEAVRHIANLSAEVNRTVDNIGARRLHTVLEKIVEEVSFHAPEKVATYRETGGIG 471

Query: 411 --TVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +VID   V   IG+   +TD+  F+L
Sbjct: 472 PLKIVIDVPEVDGAIGELMQKTDLSRFVL 500


>gi|317179117|dbj|BAJ56905.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F30]
          Length = 443

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/445 (41%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP++EGS V+TKYGSI 
Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIIEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|57242464|ref|ZP_00370402.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           upsaliensis RM3195]
 gi|57016749|gb|EAL53532.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter
           upsaliensis RM3195]
          Length = 439

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/444 (41%), Positives = 291/444 (65%), Gaps = 16/444 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR +L  +L+D++MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMRLSPELQDDIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E++IL+ L+           +     + E  R KL++G++ +  I++E++    
Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQKSLEKMRIKLKNGDLDESVIELEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  + SD+++D + + 
Sbjct: 179 ---MFDTNPNLPPEMSAMQDMVKVIGVGSKKVKKEMKIKDARNTLKSEASDKILDTENIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++ VEN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGSSV TK G + T
Sbjct: 236 SEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY EL+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYIELL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+S+ A +   K+ V
Sbjct: 356 KTEDLSLEFDDEAIREIAKIASRANEEMQDIGARRLHTVIEKLLEDLSYEADEYAGKSFV 415

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +D + V   +       D+  +IL
Sbjct: 416 VDKKMVEEKLSSIVENKDLARYIL 439


>gi|261839652|gb|ACX99417.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
          Length = 440

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+ +AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 1   MNMTPREIVAYLDEYIIGQKEAKKFIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 61  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 120

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 121 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 180 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 235

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 236 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 295

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 296 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEKIMYMILTQTKTSIIKQYQAL 355

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 356 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 415

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 416 TITKELVQSKLEDLVADENLVKYIL 440


>gi|254779462|ref|YP_003057567.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori B38]
 gi|254001373|emb|CAX29358.1| ATP-dependent Hsl protease ATP-binding, subunit HslU [Helicobacter
           pylori B38]
          Length = 443

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/445 (41%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ EG+ + F +D+I  LA ++ N N    DIGAR L T +E+VLEDISF A D   + V
Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARMLHTTIEKVLEDISFEAEDYFGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|317010764|gb|ADU84511.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SouthAfrica7]
          Length = 443

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 292/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+ ++EI+IEV     
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRKK-- 181

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
              N +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 182 ---NIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|207092709|ref|ZP_03240496.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 443

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 287/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +         S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKESGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|217034384|ref|ZP_03439799.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10]
 gi|216943179|gb|EEC22649.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10]
          Length = 443

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 289/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I    +               +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|315586803|gb|ADU41184.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter
           pylori 35A]
          Length = 443

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/445 (41%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I    +               +N+    ++++  GE+ ++EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|242309065|ref|ZP_04808220.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum
           MIT 98-5489]
 gi|239524489|gb|EEQ64355.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum
           MIT 98-5489]
          Length = 440

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/442 (41%), Positives = 293/442 (66%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV+ LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVAYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E  R + R   
Sbjct: 61  TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVIASINLVKEEHRQKNRAGI 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                ++I++ L+                N  E  R+K+++GE+   +I+IE+   + +I
Sbjct: 121 EKYVLDKIVEKLIPPLPKGASEQKIEEYENAAEKMRQKVKNGEMDHLKIEIEIPKRTFEI 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            + ++P   +     ++ +F  +       K  +++++    L  + S+ L+D++++ ++
Sbjct: 181 EDGNMPAEFAKVQETIARVF--IASPKDNPKKEVTIKEAKEILKVEASEALLDLESIKQE 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  EN GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS V+TKYGSI TDH
Sbjct: 239 GLKRAENSGIIFIDEIDKVAVSSNSQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSIKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY+ LM  
Sbjct: 299 ILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEALMAV 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L F++++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + + V I 
Sbjct: 359 EEVSLKFSDEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQEVEIT 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
              V+  +    +++D+  +IL
Sbjct: 419 ESLVKEKLETLVADSDVARYIL 440


>gi|237749804|ref|ZP_04580284.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC
           43879]
 gi|229374554|gb|EEO24945.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC
           43879]
          Length = 445

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 282/442 (63%), Gaps = 17/442 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIVS LD YIIGQ+DAK+AVAIALRNR+RR QLP +++DE+ PKNIL++G TGVGKT
Sbjct: 9   TPREIVSYLDGYIIGQKDAKKAVAIALRNRYRRLQLPKEMQDEVTPKNILMIGSTGVGKT 68

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RR+A+L G PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++N+++  ++++  ++  
Sbjct: 69  EIARRMAKLMGLPFVKVEASKYTEVGFVGRDVESMVRDLVNASVNLLQNKQKEDSADKID 128

Query: 128 INAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSSDIS 177
                RI   L+       T +            +++++ G + D +I IE+A     I 
Sbjct: 129 DYILNRITQKLLPPLPAGVTEQKKQEYDISFEKMKERVKSGAMDDTKIMIEIAKQEEKID 188

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                      I+ + E   K +     K K  +++++    L  +  + ++D D +  D
Sbjct: 189 E-----NLPAEIIKVQESLIKALNMKGDKIKKEITIKEAKELLRPEAQNAVLDSDMIKTD 243

Query: 237 SIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++++ E  GI+F+DE DKI  A    +    S+EGVQRDLLP+VEGS V T+YG I TDH
Sbjct: 244 ALKLAEQSGIIFIDEIDKIAVASKDSSKQDPSKEGVQRDLLPIVEGSVVQTRYGQIKTDH 303

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L++     ILT T++++I QY+ L+  
Sbjct: 304 ILFIAAGAFHFSKPSDLIPELQGRFPLRVELQVLDEEALYQILTQTKNSIIRQYEALLSV 363

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EGI L F + ++ AL+ ++ + N    DIGARRL T +ERVLEDISF A D + + VVI 
Sbjct: 364 EGITLKFEDSALRALSRLSFHANEKTEDIGARRLHTTIERVLEDISFCAEDYKGQEVVIT 423

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
              V   + D     D+  +IL
Sbjct: 424 ESIVEEKLKDLVENVDLARYIL 445


>gi|297379708|gb|ADI34595.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter pylori
           v225d]
          Length = 443

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/445 (41%), Positives = 288/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|303279102|ref|XP_003058844.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460004|gb|EEH57299.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 590

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 293/462 (63%), Gaps = 25/462 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +  T   +P + V  LD++I+GQ DAKRA A+ALRNRWRR ++   LRDE++PKNIL++G
Sbjct: 129 LSGTDGLTPAKTVELLDKFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIG 188

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I+RRLA++  APF+KVE TKFTE+G+ GR+V+QII+DLVD A++I R   R 
Sbjct: 189 PTGCGKTEIARRLAKITDAPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAVHITRAKLRT 248

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           + + +     E ++++ + G+T+   TRE F    R+G +  + I++E+ D +       
Sbjct: 249 KFQSEVDAIVENKVVEFMCGETSGDATREAFLSMYREGRLDGRTIELELPDNAGGGPGDV 308

Query: 181 IPGGASVGIL------NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + G      +       L+E      G G   K RM+V +C P +   E +RLI+ DTV 
Sbjct: 309 LSGMVPPREVVISLNKFLNEGVRGKSGKGSTTKKRMTVAECRPVIEEMEYERLINSDTVV 368

Query: 235 RDSIQMVENYGIVFLDEFDK--------IVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++++   EN GIVFLDE DK        + + D  +G   S EGVQRDLLP++EGS V T
Sbjct: 369 KEALSATENDGIVFLDEIDKARSIPTPIVSSNDYRHGADASSEGVQRDLLPIIEGSVVQT 428

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G++NTD ILFIASGAFH  +P+D+L E+QGR P++V LK L K D   ILT+ E+N+I
Sbjct: 429 KHGNVNTDQILFIASGAFHQCKPSDMLAELQGRLPIKVELKGLTKEDLLRILTEPETNVI 488

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q K L++TEG+ L FT+ +I  +AD++  +N TV +IGARRL TV+E+++ED+SF+A +
Sbjct: 489 KQQKALLETEGVDLSFTDAAIAHIADISAEVNRTVDNIGARRLHTVLEKIVEDVSFAAPE 548

Query: 407 LQEKTVVIDAEYVR-----------LHIGDFPSETDMYHFIL 437
              KT   + E  R             IG+   +TD+  F+L
Sbjct: 549 RVRKTREAEGEDARLKVVIDVKDVDDAIGELLKKTDLSRFVL 590


>gi|154334422|ref|XP_001563458.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060479|emb|CAM42026.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 456

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 196/436 (44%), Positives = 295/436 (67%), Gaps = 16/436 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVG
Sbjct: 33  DMRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVG 92

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R +  E+
Sbjct: 93  KTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEE 152

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A + AE+RIL +L G +      + FR+ LR G + D E+ +E+ +        + P  A
Sbjct: 153 AKVKAEDRILKSLAGVS------DGFREHLRSGALDDIEVMVELQEKK------EKPKTA 200

Query: 186 SVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           S   + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++  E 
Sbjct: 201 SGEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEE 260

Query: 244 YGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIAS 301
            GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILFI S
Sbjct: 261 DGIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICS 320

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+ L 
Sbjct: 321 GAFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLI 380

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F +D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA YV+ 
Sbjct: 381 FEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSERFVIDAAYVKR 440

Query: 422 HIGDFPSETDMYHFIL 437
            +     + D+  FIL
Sbjct: 441 AVEKMIKKVDIKKFIL 456


>gi|332673693|gb|AEE70510.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter
           pylori 83]
          Length = 443

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 288/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+ ++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIVKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV      K K  +SV++    L  + SD L+D +++
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF   D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFETEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|203284216|ref|YP_002221956.1| heat shock protein [Borrelia duttonii Ly]
 gi|203287755|ref|YP_002222770.1| heat shock protein [Borrelia recurrentis A1]
 gi|201083659|gb|ACH93250.1| heat shock protein [Borrelia duttonii Ly]
 gi|201084975|gb|ACH94549.1| heat shock protein [Borrelia recurrentis A1]
          Length = 451

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 198/444 (44%), Positives = 297/444 (66%), Gaps = 19/444 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TGVGKT 
Sbjct: 12  PREIVAELDKYIIGQSEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGVGKTE 71

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D V+E+AS 
Sbjct: 72  IARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVKEEASK 131

Query: 129 NAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEVADTSS 174
            AE+RI+D L+  +  S                R+ FRK+LR GE+ +  ID+ V+    
Sbjct: 132 RAEDRIIDKLLKNSENSENDNITDEEKRVRDKLRDKFRKQLRKGELDENLIDVYVSGKMP 191

Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                    G      +++  L + +    RKK+  + ++K    ++ +E ++L+D + +
Sbjct: 192 VSTIEIFSGGNLEEIDMSIGGLINNIFD--RKKRRELKIKKAREIIISEELEKLVDYENI 249

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +   VEN GIVF+DE DKIV ++   G  VSREGVQRD+LP+VEGS V+T+YG ++T
Sbjct: 250 VDIAKSRVENMGIVFIDEIDKIVTKN-RTGNDVSREGVQRDILPIVEGSKVNTRYGIVDT 308

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
            HILFIA+GAF++S+P+DL+PE+QGRFP++V L SL+  DF+ IL  T+++LI QY  + 
Sbjct: 309 SHILFIAAGAFNLSKPSDLIPELQGRFPIKVELTSLSIDDFKNILKCTKNSLIKQYIAMF 368

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           K   + L FTE++ID +A++  N+N    ++GARRL  VME++L D+ F A   + K + 
Sbjct: 369 KVYNLTLTFTEEAIDRIAELTFNMNFEGENLGARRLHGVMEKILADLFFEAPGSKLKKIE 428

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I+ +YV   I     + D+ ++I+
Sbjct: 429 INLDYVDEKIK-INEQKDLNYYII 451


>gi|317177646|dbj|BAJ55435.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F16]
          Length = 443

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 289/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI      G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVNSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|224437278|ref|ZP_03658250.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313143733|ref|ZP_07805926.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313128764|gb|EFR46381.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 442

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/447 (41%), Positives = 287/447 (64%), Gaps = 17/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  N +P++IV  LD YIIGQ +AK+AVAIALRNR+RR +L  +++DE+ PKNIL++G T
Sbjct: 1   MKENMTPKQIVEYLDGYIIGQSEAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGST 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  ++N+V    R + 
Sbjct: 61  GVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQKA 120

Query: 123 REQASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADT 172
           + + +    E+I   L+       +              ++K+  GE+ + +I+IE++  
Sbjct: 121 QAEINDYIIEKITKKLLPPLPQGASESKQNEYDISFAKMKQKVLKGEVDELKIEIEISKK 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMD 231
           +    +   P      ++ + E   KV+     K K  +SV++    LM + ++ ++D +
Sbjct: 181 AQVGDDNLPP-----DMIKVQESIFKVLNVTNDKVKKEVSVKEAKEALMYEATESVLDSE 235

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +  + ++  E+ G++F+DE DK+       +    S+EGVQRDLLP+VEGS V+TKYG 
Sbjct: 236 AIRAEGLKRAESNGVIFIDEIDKVAVGSKDSSRQDPSKEGVQRDLLPIVEGSVVNTKYGQ 295

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I TD+ILFIA+GAFH S+P+DL+PE+QGRFP+RV L SLN+     ILT T+S+L+ QY+
Sbjct: 296 IKTDYILFIAAGAFHFSKPSDLIPELQGRFPLRVELDSLNEESLYKILTQTKSSLLRQYQ 355

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+ TE I L+F++++I  +A ++ + N    DIGARRL T +ERVLE+ISF+    Q K
Sbjct: 356 LLLDTENIRLEFSDEAIREIAKLSHSANERTEDIGARRLHTTIERVLEEISFNIDTYQGK 415

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V I AE V+  +GD     D+  +IL
Sbjct: 416 EVTITAEMVKERLGDVVENVDLARYIL 442


>gi|119953094|ref|YP_945303.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia turicatae
           91E135]
 gi|119861865|gb|AAX17633.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia
           turicatae 91E135]
          Length = 451

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 298/449 (66%), Gaps = 19/449 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N  P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TG
Sbjct: 7   NQNIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTG 66

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           +GKT I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D VR
Sbjct: 67  IGKTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVR 126

Query: 124 EQASINAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEV 169
           E+AS  AEERI+D L+  +  S                R  FRK+LR G+I D  IDI V
Sbjct: 127 EEASKRAEERIIDKLLKTSEGSENDNTSEEERKIRDKLRNKFRKQLRSGDIDDNLIDIYV 186

Query: 170 ADTSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +                    +++  L + +    RKK+  + ++K    ++ +E ++L+
Sbjct: 187 SGKMPVSTIEIFSGSNFEEIDMSIGGLINNIFD--RKKRRELKIKKAREIIISEELEKLV 244

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D + +   +   VEN GIVF+DE DKIV ++   G  +SREGVQRD+LP+VEGS V+TKY
Sbjct: 245 DHENIVEVAKSRVENMGIVFIDEIDKIVTKN-RTGNDISREGVQRDILPIVEGSKVNTKY 303

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G ++T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+ +DF+ IL  T+++LI Q
Sbjct: 304 GIVDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVNDFKNILKHTKNSLIKQ 363

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  + K   + L F+E++ID +A++A ++N    ++GARRL  VME++L D+ F A   +
Sbjct: 364 YIAMFKVYNLTLTFSEEAIDRIAELAFDMNYEGENLGARRLHGVMEKILADLFFEAPGSK 423

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K   I+ +YV   I     + D+ ++I+
Sbjct: 424 LKKFEINLDYVNEKIK-INEQKDLNYYII 451


>gi|303253151|ref|ZP_07339300.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302647833|gb|EFL78040.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 395

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/388 (52%), Positives = 273/388 (70%), Gaps = 13/388 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV
Sbjct: 1   MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+    ++ R 
Sbjct: 61  GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120

Query: 125 QASINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +A   AE+RILD L+               S+TR+VFRKKLR+G++ DKEI+I+VA   S
Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                  P G       L  LF   M   + KK +M ++     ++ +E+ +L++ + + 
Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           + +I+ VE +GIVF+DE DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TD
Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMK
Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVG 382
           TEG+ ++FT+D I  +A+ A  +N    
Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKPK 385


>gi|302833497|ref|XP_002948312.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f.
           nagariensis]
 gi|300266532|gb|EFJ50719.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f.
           nagariensis]
          Length = 663

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 196/466 (42%), Positives = 287/466 (61%), Gaps = 35/466 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ +V  LDRYIIGQ DAKRAVA+A RNRWRR+++P  +RD+++PKNILL+GPTG GK
Sbjct: 1   MTPKAVVELLDRYIIGQDDAKRAVAVAYRNRWRRKRVPVSIRDDIVPKNILLIGPTGCGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++ AI++VR   R +  +  
Sbjct: 61  TEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAAISLVRNKLRKQNEQAL 120

Query: 127 SINAEERILDALVGKTATSNTR-----EVFRKKLRDGEISDKEIDIEVADTSSDISN--- 178
               EERIL AL+ + +          E  R++LR+GE+ +  I++++   ++  S    
Sbjct: 121 KAAVEERILRALLQQESLGAAGPGGGLEALRERLRNGELENVFIEVDLTPPANGGSGRGG 180

Query: 179 --FDIPGGASVGILNLSELFSKVMGSGRKKKIRM--------SVQKCYPELMRDESDRLI 228
              D+  G  V    +     ++M   R  +            V++  P +   E++R+ 
Sbjct: 181 GVLDLGPGGGVPGGPVVINLERLMSGKRDVRTLRDELQLLVTEVREARPLIEDVEAERMF 240

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVS 285
             + + +++I   E  GIVF+DE DKIV+   G        S EGVQRDLLP++EGS VS
Sbjct: 241 PPEQLVKEAIAATEQDGIVFIDEIDKIVSGGRGERWRSGDPSSEGVQRDLLPIIEGSVVS 300

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           TK+G+INTDHILFI +GAFH  +P+DL+ E+QGR P+RV LK L + DF  ILT+ E NL
Sbjct: 301 TKHGNINTDHILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFYRILTEPEYNL 360

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           I Q + L+  EG+ L+FT +++  +  VA  +N T+ +IGARRL  V+ERV+E++SFSA 
Sbjct: 361 IKQQQVLLAAEGVDLEFTPEALTEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSFSAP 420

Query: 406 DL--------------QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +L                +  VID  +V   +     + D+  +IL
Sbjct: 421 ELVAAARREQQQQQEQGSQQYVIDKVHVDRTLSALLQKQDLSRYIL 466


>gi|108562915|ref|YP_627231.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori HPAG1]
 gi|122980524|sp|Q1CU15|HSLU_HELPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|107836688|gb|ABF84557.1| heat shock protein, ATP-binding subunit [Helicobacter pylori HPAG1]
          Length = 443

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           ++ EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYLGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|298710304|emb|CBJ31925.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 517

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 192/437 (43%), Positives = 291/437 (66%), Gaps = 6/437 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+++V +L+ +I+GQ DAKRAVAIALRNRWRR +L  DLR +++PKNIL++GPTG GK
Sbjct: 81  MKPQQMVDQLEEHIVGQSDAKRAVAIALRNRWRRAKLDEDLRGDVIPKNILMIGPTGCGK 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A+++ APFIKVE TKFTE+G+ G++V++II+DLV+V I + ++ +  E RE  
Sbjct: 141 TEIARRVAKMSQAPFIKVEATKFTEVGFHGQDVDRIIKDLVEVGITMTKKKQMAEHREAV 200

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGA 185
               +  I+D LVG+ + +++RE F   L+ G + +  I + +  + + D+        +
Sbjct: 201 KTTTDSIIIDCLVGEKSGASSRESFEDLLKKGALEEYNIKVPLNRNNTPDMPGVIFSDNS 260

Query: 186 SVGILNLSELFSKVMGSGRKKKIR----MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
              +  + ++   +  S   K  +    M ++   P +   E ++ +DM  V RD+++ V
Sbjct: 261 RANMPKVEDIMQVLKASTGGKNRKQEQEMKIKDARPLIEDMEIEKRLDMAQVTRDAVKAV 320

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVF+DE DKI           S EGVQRDLLP++EGSSVST++G+I+T  ILFIAS
Sbjct: 321 EETGIVFIDEIDKICNAGERRSADASAEGVQRDLLPMIEGSSVSTRHGNIDTSFILFIAS 380

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH  +P+D+L E+QGR P+RV LK L++ D   ILT+ ++NLI Q  E+MKTEG+ L 
Sbjct: 381 GAFHSCKPSDMLAELQGRLPIRVQLKGLSEDDLYKILTEPKNNLIRQQVEIMKTEGVDLQ 440

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
           FT+++I  +A V   +N TV +IGARRL TV+ER++E ISF AS+++E TVV +D + V+
Sbjct: 441 FTDEAIREIARVGAYVNKTVENIGARRLHTVLERIVETISFDASEMEEGTVVSVDIDLVK 500

Query: 421 LHIGDFPSETDMYHFIL 437
             + D    +D+  FI+
Sbjct: 501 ERVSDMLEGSDLSKFII 517


>gi|15611532|ref|NP_223183.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori J99]
 gi|11133260|sp|Q9ZLW1|HSLU_HELPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|4154993|gb|AAD06034.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
          Length = 443

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++ +++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKERLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   ++V
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|308184323|ref|YP_003928456.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SJM180]
 gi|308060243|gb|ADO02139.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori SJM180]
          Length = 443

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|146081787|ref|XP_001464347.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania infantum
           JPCM5]
 gi|157866736|ref|XP_001681923.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania major
           strain Friedlin]
 gi|68125374|emb|CAJ03233.1| putative heat shock protein HslVU, ATPase,subunit HslU [Leishmania
           major strain Friedlin]
 gi|134068439|emb|CAM66729.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           infantum JPCM5]
 gi|322497750|emb|CBZ32826.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 423

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 196/435 (45%), Positives = 294/435 (67%), Gaps = 16/435 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGK
Sbjct: 1   MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R +  E+A
Sbjct: 61  TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA 120

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            + AE+RIL +L G +      + FR+ LR G + D E+ +E+ +        + P  AS
Sbjct: 121 KLKAEDRILKSLAGVS------DGFREHLRSGALDDIEVMVELQEKK------EKPKTAS 168

Query: 187 VGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++  E  
Sbjct: 169 GEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEED 228

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIASG 302
           GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILFI SG
Sbjct: 229 GIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSG 288

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+ L F
Sbjct: 289 AFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIF 348

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA YV+  
Sbjct: 349 EDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKA 408

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 409 VDKMVKKVDIKKFIL 423


>gi|213853085|ref|ZP_03382617.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 379

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 190/379 (50%), Positives = 263/379 (69%), Gaps = 13/379 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VSTK+G + TD
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM 
Sbjct: 301 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMA 360

Query: 355 TEGIILDFTEDSIDALADV 373
           TEG+ ++FT+  I  +A+ 
Sbjct: 361 TEGVNIEFTDSGIKRIAEA 379


>gi|313884956|ref|ZP_07818708.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619647|gb|EFR31084.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 466

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 192/469 (40%), Positives = 299/469 (63%), Gaps = 42/469 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR +VSELD+YIIGQ  AKR+VA+ALRNR RR +L  ++R E+ PKNIL++GPTGVG
Sbjct: 3   QLTPRYVVSELDKYIIGQDQAKRSVAVALRNRLRRLRLDDEMRQEVKPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +A APF+KVE TK+TE+GYVGR+VE ++RDLV+ AI I+++   ++V++Q
Sbjct: 63  KTEIARRLASIAQAPFVKVEATKYTEVGYVGRDVESMVRDLVENAIRIIKDQEFEKVQDQ 122

Query: 126 ASINAEERILDALVGKTATS-------------------------------------NTR 148
           A   A ERI  AL                                            ++R
Sbjct: 123 AENLAIERIAKALRPGKKVEKKTNQNGNFDFMEMMKNFAPVGQEDSEDDEVVTEEIASSR 182

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
              R ++R+G++ + E+ I++ +    ++N +    A   ++ + E  S  +   +K + 
Sbjct: 183 RAIRAQIREGKLDNHEVTIKMQEKKLQMTNLNP---AMEQMMEMQESLS-ALQPKKKIER 238

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
            ++V++    L  +E+++L++MD +H+ ++ + ++ GI+F+DE DKI  ++  +G  VSR
Sbjct: 239 TVTVKEAIKLLSEEEAEKLVNMDNIHQKALSLAQDSGIIFIDEMDKIATKNQNSG-EVSR 297

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           +GVQRD+LP+VEG+ + TKYG I+TDHILF+ SGAFH+++P+DL+PE+QGRFP+RV+L  
Sbjct: 298 QGVQRDILPIVEGTQIQTKYGIISTDHILFVGSGAFHLAKPSDLIPELQGRFPIRVNLDD 357

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L+  DF  IL   ++ LI QY+ ++ TEG+ + FT+D+I+ +A  AV LN T  +IGARR
Sbjct: 358 LSHDDFVKILVQPKNALIKQYQAMLATEGVQIHFTDDAIEKMAYYAVELNETTDNIGARR 417

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           L T++E VLE++ F A+D     + I A YV   +       D+ H+IL
Sbjct: 418 LHTIIETVLEELLFEAADTPMGEIEITANYVSERLEKITENKDLSHYIL 466


>gi|188527647|ref|YP_001910334.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Shi470]
 gi|238691930|sp|B2UTX2|HSLU_HELPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|188143887|gb|ACD48304.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           Shi470]
          Length = 443

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 288/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A +   + V
Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAENYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|224418107|ref|ZP_03656113.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253827434|ref|ZP_04870319.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253510840|gb|EES89499.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 446

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/448 (41%), Positives = 293/448 (65%), Gaps = 13/448 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+     +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G
Sbjct: 1   MENYIAMTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E  R 
Sbjct: 61  STGVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKEEHRQ 120

Query: 121 EVREQASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +  +       ++I++ L+                   E  R+K+ +GE+   +I+IEV 
Sbjct: 121 KNAQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIEIEVP 180

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             + +I + ++P   +     ++ +F  +       K  +S+++    L  + S+ L+D+
Sbjct: 181 KRAFEIEDGNMPAEFAKVQETIARVF--IASPKENPKKEVSIKEAKEILKIEASEALLDL 238

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYG 289
           +++ ++ ++  E+ GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS V+TKYG
Sbjct: 239 ESIKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSIVNTKYG 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           SI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY
Sbjct: 299 SIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQY 358

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + L+  E + L F+E++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + 
Sbjct: 359 EALLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKG 418

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + V I    V+  + +  + +D+  +IL
Sbjct: 419 QEVEITESLVKEKLDNLVANSDIARYIL 446


>gi|237752721|ref|ZP_04583201.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376210|gb|EEO26301.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 440

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/442 (41%), Positives = 292/442 (66%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS LD YIIGQ+DAK+ VAIALRNR+RR QLP +++DE+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVSYLDEYIIGQKDAKKIVAIALRNRYRRLQLPKEIQDEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+++E  R +  +  
Sbjct: 61  TEIARRMAKIMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLIKEEHRSKSTQDI 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                ++I++ L+                 T    R+K+ +GE+   +I++EV   + +I
Sbjct: 121 EKYVLDKIVEKLIPPLPKGASEQKIEEYEKTVSKMRQKVLNGEMDHLKIEVEVPKKTFEI 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            + ++P   +     ++++F  +       K  +++++    L  + S+ L+D+D +  +
Sbjct: 181 EDGNMPAEFAKVQETIAKVF--IASPKDSPKKEVTIKEAKELLKVEASEALLDLDAIKHE 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  E+ GI+F+DE DK+    +G+     S+EGVQRDLLP+VEGS V+TKYGSI TDH
Sbjct: 239 GLKRAESSGIIFIDEIDKVAVSGNGSQRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY+ L+  
Sbjct: 299 ILFIAAGAFSLSKPSDLIAELQGRFPLRVELDSLDEEALYKILTQTKNSILRQYEALLGV 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L F++++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + + V I 
Sbjct: 359 EEVRLSFSDEAIRALAHYSQVANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQDVEIT 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
              V+  +    +++D+  +IL
Sbjct: 419 EVLVKEKLESLVADSDIARYIL 440


>gi|308182670|ref|YP_003926797.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori PeCan4]
 gi|308064855|gb|ADO06747.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori PeCan4]
          Length = 443

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/445 (42%), Positives = 287/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKIKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F + +I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYFGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|109947437|ref|YP_664665.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           acinonychis str. Sheeba]
 gi|123066225|sp|Q17XG0|HSLU_HELAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|109714658|emb|CAJ99666.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter
           acinonychis str. Sheeba]
          Length = 443

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 189/445 (42%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVTYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLRMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAISPKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVEVAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|317013933|gb|ADU81369.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Gambia94/24]
          Length = 443

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 290/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|308063688|gb|ADO05575.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori Sat464]
          Length = 443

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 186/445 (41%), Positives = 288/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G     S+EGVQRDLLP+VEGS V+TKYG I 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EGI + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGIEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E ++  + D  ++ ++  +IL
Sbjct: 419 TITKELIQSKLEDLVADENLVKYIL 443


>gi|307637194|gb|ADN79644.1| ATP-dependent hsl protease [Helicobacter pylori 908]
 gi|325995783|gb|ADZ51188.1| ATP-dependent hsl protease ATP-binding subunit [Helicobacter pylori
           2018]
 gi|325997379|gb|ADZ49587.1| ATP-dependent protease ATP binding subunit [Helicobacter pylori
           2017]
          Length = 443

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 188/445 (42%), Positives = 291/445 (65%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKYLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   KV    + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +   G+    S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +D+I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + +
Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQCI 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  +GD  ++ ++  +IL
Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443


>gi|322489764|emb|CBZ25024.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 423

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/435 (45%), Positives = 294/435 (67%), Gaps = 16/435 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGK
Sbjct: 1   MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+L  APF+KVE TKFTE+G+ GR+VE II DL   +++  +++ R +  E+A
Sbjct: 61  TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA 120

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            + AE+RIL +L G +      + FR+ LR G + D E+ +E+ +        + P  AS
Sbjct: 121 KLKAEDRILKSLAGVS------DGFREHLRSGALDDIEVMVELQEKK------EKPKTAS 168

Query: 187 VGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              + +S     +MG  R++ ++  M ++  +P ++++E D+++D + V  ++++  E  
Sbjct: 169 GEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEED 228

Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKY-GSINTDHILFIASG 302
           GIV +DE DKIV    G  G   S EGVQ+DLLPLVEG++VSTK+   + TD ILFI SG
Sbjct: 229 GIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSG 288

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH  +P+D+L E+QGR P+RV L+ L+K DF  I+T+   NLI Q+K +M TEG+ L F
Sbjct: 289 AFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIF 348

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +D++  +A +A  +NSTV +IGARRL T+ E+V+E+ISF   + + +  VIDA YV+  
Sbjct: 349 EDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVIDAAYVKKA 408

Query: 423 IGDFPSETDMYHFIL 437
           +     + D+  FIL
Sbjct: 409 VDKMVKKVDIKKFIL 423


>gi|317009508|gb|ADU80088.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter
           pylori India7]
          Length = 443

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 185/445 (41%), Positives = 288/445 (64%), Gaps = 17/445 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL   L++E+ PKNIL++G TGV
Sbjct: 4   LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V    ++++++
Sbjct: 64  GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123

Query: 125 QASINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +      E+I   L+               +N+    ++++  GE+  +EI+IEV   S 
Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKS- 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233
                +I       IL + E   K     + K K  +SV++    L  + SD L+D + +
Sbjct: 183 ----IEIDSNVPPEILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238

Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + ++  E+ G++F+DE DKI  +         S+EGVQRDLLP+VEGS V+TKYGSI 
Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEAGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +    +ILT T++++I QY+ L
Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +K EG+ + F +++I  LA ++ N N    DIGARRL T +E+VLEDISF A D   + V
Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQDV 418

Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437
            I  E V+  + D  ++ ++  +IL
Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443


>gi|313141642|ref|ZP_07803835.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313130673|gb|EFR48290.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 440

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/442 (41%), Positives = 291/442 (65%), Gaps = 13/442 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK
Sbjct: 1   MTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV  +IN+V+E  R +  +  
Sbjct: 61  TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKEEHRQKNAQGI 120

Query: 127 SINAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                ++I++ L+                   E  R+K+ +GE+   +I+IEV   + +I
Sbjct: 121 QKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIEIEVPKRAFEI 180

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            + ++P   +     ++ +F  +       K  +S+++    L  + S+ L+D++++ ++
Sbjct: 181 EDGNMPAEFAKVQETIARVF--IASPKENPKKEVSIKEAKEILKIEASEALLDLESIKQE 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  E+ GI+F+DE DK+    +  G    S+EGVQRDLLP+VEGS V+TKYGSI TDH
Sbjct: 239 GLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSIKTDH 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++     ILT T+++++ QY+ L+  
Sbjct: 299 ILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEALLAV 358

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           E + L F+E++I ALA  +   N    DIGARRL TV+E+V+E+ISF A + + + V I 
Sbjct: 359 EEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQEVEIT 418

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
              V+  + +  + +D+  +IL
Sbjct: 419 ESLVKEKLDNLVANSDIARYIL 440


>gi|291276927|ref|YP_003516699.1| putative heat shock protein [Helicobacter mustelae 12198]
 gi|290964121|emb|CBG39965.1| putative heat shock protein [Helicobacter mustelae 12198]
          Length = 443

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/444 (40%), Positives = 282/444 (63%), Gaps = 17/444 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PREI   LD YIIGQ +AKRA+AIALRNR+RR QL   +R+E+ PKNI+++G TGVG
Sbjct: 5   SMTPREITRHLDEYIIGQDEAKRAIAIALRNRYRRLQLDEKIREEVTPKNIMMIGSTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A++   PF+KVE +K+TE+G+VGR+VE ++RDLV  +I++V    R   + Q
Sbjct: 65  KTEIARRMAKMMNLPFVKVEASKYTEVGFVGRDVESMVRDLVSASIHLVESECRQSAQTQ 124

Query: 126 ASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSSD 175
                 ++I   L+     + T+E             +K+++G +   +I+IE+     +
Sbjct: 125 IQEYILQKITRILMPPLPDTITQEKKEEYTQSFEKMYQKVKNGAMDHVKIEIEIQKRLLE 184

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             N   P      ++ + E   KV+   +   K  M++++    L  + S+R++DM+ + 
Sbjct: 185 NDNNMPP-----ELIKVQESIIKVLSKNQEMIKKEMTIKEAKIALQEEASERILDMEKIK 239

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  +  GI+F+DE DK+      G+    S+EGVQRDLLP+VEGS V++KYG+I T
Sbjct: 240 TEALERAQTSGIIFIDEIDKVAVGSRDGSRQDPSKEGVQRDLLPIVEGSMVNSKYGAIKT 299

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++     ILT T++++I QY+ L+
Sbjct: 300 DHILFIAAGAFHLSKPSDLIPELQGRFPIRVELDSLSEEVMYQILTQTKTSIIKQYQALL 359

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TE + L F +D++  LA ++ + N    DIGARRL T MERVLE+ISF A     KT  
Sbjct: 360 STEDVNLVFEDDALRELARLSYHANQKNEDIGARRLHTTMERVLEEISFDADLHAGKTYT 419

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           I   +++  + +    TD+  +IL
Sbjct: 420 ITKNHIQEKLENLVENTDLAKYIL 443


>gi|295111498|emb|CBL28248.1| heat shock protein HslVU, ATPase subunit HslU [Synergistetes
           bacterium SGP1]
          Length = 468

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/467 (44%), Positives = 299/467 (64%), Gaps = 34/467 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L    +P  I+  L+RYI+GQ  AKRAVAIALRNR RR+ LP ++  E+MPKNIL+VGPT
Sbjct: 4   LNSALTPSRIIEYLNRYIVGQDKAKRAVAIALRNRLRRRALPPEMAHEIMPKNILMVGPT 63

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RRLA L+ APFIKVE TKFTE+GYVGR+VE IIRDL++  + +VR    + +
Sbjct: 64  GVGKTEIARRLATLSDAPFIKVEATKFTEVGYVGRDVETIIRDLMEFGVAMVRRRMLETM 123

Query: 123 REQASINAEERILDALVGK--------------------------------TATSNTREV 150
           +  A   AE+R+LDA++ K                                   + TR  
Sbjct: 124 QAPALERAEQRLLDAMLPKKERRFSVPDLMKAFGASQEEAAEEDREEEGQAEENTRTRAR 183

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             + LR G + D+E+D+EV D  + I      G  S+G+ N+SE+ S ++   R +K  M
Sbjct: 184 LLEMLRAGRLDDREVDVEVTDAVTAIPVMGASGMDSMGV-NISEMLSGIL-PKRSRKRHM 241

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            V++    L  +E+++LID +T+ R+++++V+  GIVFLDE DK+V R    G  VSREG
Sbjct: 242 KVKEALRILQSEEAEKLIDKETLAREALEIVQEGGIVFLDELDKVVVRGGSTGPDVSREG 301

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           VQRDLLP+VEGS V T+YG + TDHILFIA+GAF   +P+DL+PE+QGRFP+RV L+ L+
Sbjct: 302 VQRDLLPIVEGSVVQTRYGPVKTDHILFIAAGAFSGVKPSDLIPELQGRFPIRVELEPLS 361

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             + + ILT+ E++LI QY  L+ TEG  L FTE++   +A ++  +N+ + DIGARRL 
Sbjct: 362 WENLQQILTEPENSLIRQYTALISTEGTELVFTEEATAEIAKLSSKMNAEMEDIGARRLH 421

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           T+ME++LE+ISFS  D   + + I A+ VR  +       D+  ++L
Sbjct: 422 TMMEQLLEEISFSVCDRSPERIEITADLVRERLAPLVENRDIRRYLL 468


>gi|310828087|ref|YP_003960444.1| heat shock protein HslVU [Eubacterium limosum KIST612]
 gi|308739821|gb|ADO37481.1| heat shock protein HslVU [Eubacterium limosum KIST612]
          Length = 473

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/476 (42%), Positives = 290/476 (60%), Gaps = 42/476 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M++  + +P++IV EL+RYIIGQ+ AK+AVA+ALRNR+RR  L  ++RDE  PKNI+++G
Sbjct: 1   MEMK-DLTPKKIVEELNRYIIGQEPAKKAVAVALRNRYRRSLLSEEMRDEFTPKNIIMMG 59

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A+L  APFIKVE TKFTE+GYVGR+VE ++RDLV  +I  V++ +  
Sbjct: 60  PTGVGKTEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMVRDLVTTSIRKVQQEKMK 119

Query: 121 EVREQASINAEERILDALVGKTATSNT--------------------------------- 147
           EV EQA   A + ILD LV       T                                 
Sbjct: 120 EVYEQAEERANKLILDILVPMKKKKETIKTPFDIFMKSNKQPAQPEAPDPAKEAEKAEKE 179

Query: 148 ------REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 RE   + L DG++ D+ I+IEV D  S      + G      +N++++    + 
Sbjct: 180 KNLQIKREAIAQDLADGKMEDEVIEIEVEDDGSKTIGV-MAGMNDDMSININDILGDFLP 238

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
           S +KK+     +         E+ ++IDMD V    ++  E  GI+F+DE DKI+   + 
Sbjct: 239 SKKKKRHVKV-KDARKIFTNQEAQKMIDMDEVKEIGLREAEQNGIIFIDEIDKIIGNGNN 297

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
           NG  VSREGVQRD+LP+VEGS+++TKYG + TD ILFI +GAFHV++ +D++PE+QGRFP
Sbjct: 298 NGPDVSREGVQRDILPIVEGSTITTKYGPVKTDFILFIGAGAFHVAKISDMIPELQGRFP 357

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           + V L SL + DF+ ILT  E++ I QY+EL+KTE + L F +D+I+ LA +A   N   
Sbjct: 358 ITVELDSLTEEDFKQILTQPENSAIRQYQELLKTEDVDLVFEDDAIETLAQIAFAQNEEQ 417

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            +IGARRL TV+E++LE++SF ASD    T V++ EYV         E     F+L
Sbjct: 418 ENIGARRLHTVLEKLLEEVSFYASDYDADTFVVNKEYVNSVFKPAERERSYSRFLL 473


>gi|325115573|emb|CBZ51128.1| putative ATP-dependent heat shock protein [Neospora caninum
           Liverpool]
          Length = 527

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 194/450 (43%), Positives = 290/450 (64%), Gaps = 20/450 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVG 65
             P+E+V  L++YIIGQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+GPTGVG
Sbjct: 79  LCPQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVG 138

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R  
Sbjct: 139 KTEVARRLAKRIDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEAMRPA 198

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP--- 182
           A   AE +IL+AL+GK      ++  R  LR G +  + + ++     +  +    P   
Sbjct: 199 AEHRAETKILEALLGKMPAEEHQQWLR-HLRCGALDSRRVHVDFPARPNVGAASGGPAFD 257

Query: 183 -GGASVGILNLSELFSKV-----------MGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            GG    + +L  +   +            G    +   ++V++   +LM+ E D +I  
Sbjct: 258 DGGRDSIVADLESIIRDIDRPRPAFFATRRGPRGSEARNLTVKEAREKLMQAELDAMITK 317

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKY 288
           D V + +++ VE  GIVF+DE DKI ++   +G     S EGVQRDLLPL+EG++VST+Y
Sbjct: 318 DLVVQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGVQRDLLPLIEGTTVSTRY 377

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TD+ILFIASGAFH  RP++LL E+QGR P+RV L SL +SD R ILT T++NLI Q
Sbjct: 378 GDVKTDYILFIASGAFHCVRPSELLAELQGRLPIRVTLTSLTESDLRDILTKTQNNLIEQ 437

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL- 407
              L++TE + L FTE++++ +A VA  +N++V +IGARRL T++E+++EDI+++A  + 
Sbjct: 438 NTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHTIIEKIMEDINYAAPSMA 497

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
               V ID E VR  +    ++ D   F+L
Sbjct: 498 PGTRVEIDLERVRSSVSSLLTKMDYTRFVL 527


>gi|258645671|ref|ZP_05733140.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM
           15470]
 gi|260403038|gb|EEW96585.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM
           15470]
          Length = 453

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 202/457 (44%), Positives = 295/457 (64%), Gaps = 31/457 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR IV  LD YI+GQQ+AKR+VA+ALRNRWR  +LP ++  E+ PKNILL+GPTGVG
Sbjct: 3   DLTPRRIVEYLDEYIVGQQNAKRSVAVALRNRWRSSRLPKEIAREVSPKNILLIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A L GAPF+KVE TK+TE+GYVGR+VE ++RDL + A+ +V++       + 
Sbjct: 63  KTEIARRIAALTGAPFVKVEATKYTEVGYVGRDVESMVRDLAEEAVRLVKKQESGRYGKD 122

Query: 126 ASINAEERILDALVGKTATS------------------------NTREVFRKKLRDGEIS 161
           A   A ++I + +                                 R+    ++R GE+ 
Sbjct: 123 AEEAAVQKIAEIMWPAKKKETRSPMEIILGEKAEKTGVSDEGERERRKNLLARIRSGELD 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D++I++E+ +  +     D     +     +S++F+ +    + KK +M+V+     L  
Sbjct: 183 DRQIEVELEEKGNIEDTAD-----NEQANRISQIFASM-MPKKMKKRKMTVRMAKTVLAE 236

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVE 280
             ++ ++DMD V   ++ + E  GI+F+DE DKI  R  +  G  VSREGVQRD+LP+VE
Sbjct: 237 VSAEEMVDMDVVRDRAVALAEERGIIFIDEIDKIAGRHGASGGPDVSREGVQRDILPIVE 296

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V TKYG I TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV LKSL + D R ILT+
Sbjct: 297 GATVKTKYGRIKTDHILFMAAGAFHVSKPSDLIPELQGRFPIRVELKSLTEEDLRKILTE 356

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               LI QY  L++TEG+ + FTEDS+ A+A++A  +NS   DIGARRL T++ERVLE++
Sbjct: 357 PRQALIRQYTALLETEGVTVTFTEDSVSAIAEIASVVNSETEDIGARRLYTILERVLEEL 416

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF AS+L+ K V ID  YVR  +G+   + D  ++IL
Sbjct: 417 SFEASELENKEVTIDGTYVRQKLGEITKDMDTSNYIL 453


>gi|328948445|ref|YP_004365782.1| heat shock protein HslVU, ATPase subunit HslU [Treponema
           succinifaciens DSM 2489]
 gi|328448769|gb|AEB14485.1| heat shock protein HslVU, ATPase subunit HslU [Treponema
           succinifaciens DSM 2489]
          Length = 507

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/491 (39%), Positives = 292/491 (59%), Gaps = 61/491 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +IV +LD YIIGQQ AKR VA+ALRNR RR +LP ++RDE+ PKNIL++GPTGVGK
Sbjct: 18  LTPAQIVEKLDNYIIGQQKAKRFVAVALRNRQRRIKLPEEIRDEVAPKNILMMGPTGVGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI----VRESRRDEV 122
           T I+RRLA+L GAPF+KVE TK+TE+GYVGR+VE ++RDL+ V  N+    ++E  R++ 
Sbjct: 78  TEIARRLAKLCGAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEMQEKLREKC 137

Query: 123 ------------------REQASINAEERILDAL-------------------------- 138
                             +++   ++ +R +  L                          
Sbjct: 138 IPIVEDQLLDLLLPGSSGKKKRKDSSPKRDVHVLGNIFGESSPIQGSLIQVDIPKENPAQ 197

Query: 139 -----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                            ++TRE FR  LR+G++ D+ ++I V    S   N         
Sbjct: 198 DEPQEEIEEETSTSEDMASTREKFRTMLREGKLEDRVVEITVHRQPSFSMNMMGASNPED 257

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
              +++ L  +++  GR K+  ++V++    LM D  +R  D D    ++ + VE  GI+
Sbjct: 258 LEESINGL-QELLSGGRSKRRNVTVREARQILMADTLERNTDSDKAADEAKKRVEQSGII 316

Query: 248 FLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           F+DE DKI      G+   VSREGVQRD+LP+VEGS V+TK+G +NT HILFI +GAF V
Sbjct: 317 FIDEIDKIATHGGEGDRQAVSREGVQRDILPIVEGSDVNTKWGVVNTTHILFIGAGAFSV 376

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           S P+DL+PE+QGRFP+RV L+ L K DF+ ILT+ ++ L+ QY+ L+ TEG+ L F +++
Sbjct: 377 SAPSDLIPELQGRFPLRVELEPLKKEDFKRILTEPKNALVKQYEALLATEGVTLKFADEA 436

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ID ++ +A ++NS   +IGARRL T+ME VLE++SF A     +T+ ID++YV   +   
Sbjct: 437 IDRMSFIAEDVNSHSENIGARRLHTIMETVLEELSFDADRHAGETITIDSKYVDEKLNGV 496

Query: 427 PSETDMYHFIL 437
               ++  +IL
Sbjct: 497 IQNQNLERYIL 507


>gi|254459110|ref|ZP_05072533.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales
           bacterium GD 1]
 gi|207084381|gb|EDZ61670.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales
           bacterium GD 1]
          Length = 442

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 290/444 (65%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LDRY+I Q+DAK+ +A+ALR R+RR QL  +L++E+MPKNIL++G TGV
Sbjct: 1   MNLTPKEIVEYLDRYVISQKDAKKTIALALRTRYRRMQLSQELQNEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA++   PFIKVE +K+TE+G+VGR+VE +IRDLV  +I+IV++ + +  +E
Sbjct: 61  GKTEISRRLAKMLSVPFIKVEASKYTEVGFVGRDVESMIRDLVVASISIVKKEKEEANKE 120

Query: 125 QASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSS 174
           +       +I++ L+       +               +++ +GE+ D+ I+++      
Sbjct: 121 KIDNYILNKIVEKLLPPLPDGASESKKDDYQRLLGAMEERVINGEMDDRVIELQFDKVHL 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + ++ ++P   +    + S++F  +  +    K  ++V+     L  + S +L+DM  ++
Sbjct: 181 EFNDTNLPPEMAKVQESFSKIFETM--NKEDNKKEVTVKDAKSILRVEASHKLLDMTNIN 238

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  E+ GI+FLDE DKI   +   G    S+EGVQRDLLP+VEGSSV+TKYG INT
Sbjct: 239 TEALKRAEDGGIIFLDEIDKIAVSEKSQGRNDPSKEGVQRDLLPIVEGSSVTTKYGVINT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL +     ILT TE++L+ QY+ L+
Sbjct: 299 DHILFIAAGAFHITKPSDLIPELQGRFPLRVELESLTEDTLYKILTQTENSLLKQYEALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             EG+ L F +++I A+A ++   N    DIGARRL TV+ERVLE+ISF A + + +  +
Sbjct: 359 SVEGVKLIFEDEAIKAIAKLSHKANEMTEDIGARRLHTVLERVLEEISFEADEHRGQEFI 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           + +E V   +       D+  +IL
Sbjct: 419 VKSELVHEKLDLVVENDDLSRYIL 442


>gi|83282486|ref|XP_729791.1| heat shock protein ATPase subunit HslU [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23488601|gb|EAA21356.1| heat shock protein HslVU, ATPase subunit HslU, putative [Plasmodium
           yoelii yoelii]
          Length = 761

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/441 (42%), Positives = 292/441 (66%), Gaps = 10/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GPTGVGK
Sbjct: 321 LYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGK 380

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +    +E++EQA
Sbjct: 381 TEIARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKKQKSKMENEIKEQA 440

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA----DTSSDISNFDIP 182
               +  IL +L+G +     +E+++K L++G + DK I+I++     + ++  +N  + 
Sbjct: 441 EETVDNIILYSLLGNSVKCEEKEIWKKYLKEGLLDDKIINIDIPSYINNNNNIFTNDSVE 500

Query: 183 GGASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                 + N   + S K++     K   K  M++++   +L++ E D  I+ D + + +I
Sbjct: 501 NAVKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDVILKTAI 560

Query: 239 QMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
             VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+INT++I
Sbjct: 561 NSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYI 620

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF   +P D+L E+QGR PV V+L SL+  DF  ILT T +NL+ Q   L+KTE
Sbjct: 621 LFIASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTE 680

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L FT+D+I+++A+ A ++N  + +IG RRL T++E+++E+I++       K++VID 
Sbjct: 681 GIDLHFTDDAIESIANAAHDMNVYIENIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDK 740

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           E V+  +  F  + D+  +I+
Sbjct: 741 EVVKKSLEGFIKQFDLKKYII 761


>gi|281210431|gb|EFA84597.1| Heat shock protein HslVU [Polysphondylium pallidum PN500]
          Length = 611

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 184/435 (42%), Positives = 285/435 (65%), Gaps = 13/435 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P+EIV+ELDRYIIGQ +AKRAV+IALRNRWRR++L + ++ ++ PKNIL++GPTGVG
Sbjct: 187 SLQPKEIVTELDRYIIGQAEAKRAVSIALRNRWRRKRLDSSIKHDVYPKNILMIGPTGVG 246

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TK+TE+G+ G +V+ IIRDLV+V+IN ++       ++Q
Sbjct: 247 KTEIARRLAKIVNAPFVKVEATKYTEVGFHGPDVDSIIRDLVEVSINNIKSKIGSTHKQQ 306

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                E+ I+ +LVG T    + +     +++  + + +I++++   +   S        
Sbjct: 307 IDQEIEKEIISSLVGPTFQDRSYDDL---VKEKCLENIQIELDLPSNNDSKS-------V 356

Query: 186 SVGILNLSELFS-KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              I+  ++LF+ +V  +   KK  ++V +    L +   D++I    V + ++Q  E  
Sbjct: 357 DEEIIPFAKLFNIQVEVNKPTKKKTLTVAEARNTLEKIYKDKVIVAQDVTKLAVQSAEQN 416

Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           GIVFLDE DKI      S  G   S +GVQRDLLP++EG +V+TKYG+++T  ILFIASG
Sbjct: 417 GIVFLDEIDKICTVKESSHRGGDASTDGVQRDLLPIIEGCNVNTKYGNVDTSRILFIASG 476

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH ++P+DL+ E+QGR P+RV LK L + DF  ILT+ ++N I Q   L+KTE I L+F
Sbjct: 477 AFHSNKPSDLISELQGRLPIRVELKPLEQHDFFRILTEPKNNQIQQQVALLKTEDIDLEF 536

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T+D++  +A +A   N+ V +IGARRL  V+E+++EDISF+    + + V I  + V+ H
Sbjct: 537 TQDALQEIARIAFEANAQVQNIGARRLHGVIEKIVEDISFNCDTHKGQKVTITVDDVKKH 596

Query: 423 IGDFPSETDMYHFIL 437
           + D   +TD+  +I+
Sbjct: 597 LSDLMLKTDLSKYII 611


>gi|187918169|ref|YP_001883732.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia hermsii
           DAH]
 gi|119861017|gb|AAX16812.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia
           hermsii DAH]
          Length = 451

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 301/449 (67%), Gaps = 19/449 (4%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
             N  P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TG
Sbjct: 7   NQNIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTG 66

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT I+RRL++   APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE   D VR
Sbjct: 67  VGKTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVR 126

Query: 124 EQASINAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEV 169
           E+AS  AEERI+D L+  +  S                R+ FRK+LR+G+I D  ID+ V
Sbjct: 127 EEASKRAEERIIDKLLKASENSENNNASDEENKVREKLRDKFRKQLRNGDIDDSLIDVYV 186

Query: 170 ADTSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +                    +++  L + +    RKK+  + ++K    ++ +E ++L+
Sbjct: 187 SGKMPVSTIEIFSGSNFEEIDMSIGGLINNIFD--RKKRKELKIKKAREIIISEELEKLV 244

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D + +   +   VEN GIVF+DE DKIV ++   G  VSREGVQRD+LP+VEGS V+T+Y
Sbjct: 245 DHENIVEIAKLRVENMGIVFIDEIDKIVTKN-RTGNDVSREGVQRDILPIVEGSKVNTRY 303

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I+T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+  DF+ IL  T+++LI Q
Sbjct: 304 GIIDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVGDFKNILKHTKNSLIKQ 363

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y E+ K   + L F+E++ID +A++A N+N    ++GARRL  VME++L D+ F A   +
Sbjct: 364 YIEMFKVYNLTLTFSEEAIDRIAELAFNMNFEGENLGARRLHGVMEKILADLFFEAPGSK 423

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            K + I+ +YV   +     + D+ ++I+
Sbjct: 424 LKKIEINLDYVNEKVK-INEQKDLNYYII 451


>gi|156097158|ref|XP_001614612.1| ATP-dependent heat shock protein [Plasmodium vivax SaI-1]
 gi|148803486|gb|EDL44885.1| ATP-dependent heat shock protein, putative [Plasmodium vivax]
          Length = 824

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/439 (43%), Positives = 287/439 (65%), Gaps = 9/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D++ +++PKNIL++GPTGVGK
Sbjct: 387 LYPHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMKKDIIPKNILMIGPTGVGK 446

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA
Sbjct: 447 TEIARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQA 506

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISNFDIPGG 184
               E  IL +L+G       + ++RK L+DG + DK + I++ +   ++  SN  +   
Sbjct: 507 QETVENIILYSLLGNIKEEE-KNIWRKYLKDGSLDDKVVSIDIPNYVNNNIFSNDSVENA 565

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  ++ D + + +I  
Sbjct: 566 VKEALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISS 625

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ +   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 626 VEEEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 685

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+QGR PV V+L SL   DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 686 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLTIKDFIEILTKTHNNLLQQNIALLKTEGI 745

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   KT+VID E 
Sbjct: 746 DLQFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDREK 805

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +  F  + D+  +I+
Sbjct: 806 VKKSLEGFIKQFDLKKYII 824


>gi|221054412|ref|XP_002258345.1| atp-dependent heat shock protein [Plasmodium knowlesi strain H]
 gi|193808414|emb|CAQ39117.1| atp-dependent heat shock protein, putative [Plasmodium knowlesi
           strain H]
          Length = 836

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 192/439 (43%), Positives = 288/439 (65%), Gaps = 9/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D+R +++PKNIL++GPTGVGK
Sbjct: 399 LYPHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGK 458

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA
Sbjct: 459 TEIARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQA 518

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISNFDIPGG 184
               E  IL +L+G       + ++RK L+DG + DK + I++ +   ++  SN  +   
Sbjct: 519 QETVENIILYSLLGNIKEEE-KSIWRKYLKDGSLDDKVVSIDIPNYVNNNMFSNDSVENA 577

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  ++ D + + +I  
Sbjct: 578 VKEALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISS 637

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ +   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 638 VEEEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 697

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+QGR PV V+L SL  +DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 698 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGI 757

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   KT+VID E 
Sbjct: 758 DLQFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDKEK 817

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +  F  + D+  +I+
Sbjct: 818 VKKSLEGFIKQFDLKKYII 836


>gi|302846515|ref|XP_002954794.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f.
           nagariensis]
 gi|300259977|gb|EFJ44200.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f.
           nagariensis]
          Length = 581

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 206/469 (43%), Positives = 294/469 (62%), Gaps = 38/469 (8%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            +P  IV+ LD+YI+GQ  AKRA+A+ALRNRWRRQ+  PA  RDE+MPKNIL+VGPTG G
Sbjct: 92  LTPAAIVAALDKYIVGQAAAKRALAVALRNRWRRQRVEPATFRDEIMPKNILMVGPTGCG 151

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA+LA APF+K E TK+TE+GYVGR+VE+II+DLV+ A+ +VR+  +D + E 
Sbjct: 152 KTEVARRLAKLADAPFVKGEATKYTELGYVGRDVEEIIKDLVEAALVLVRQRAKDRLAEH 211

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA------------DTS 173
           +S  AE  IL ALVG+ A+S+T  +FR+  + GE+ D  ++I+ A             + 
Sbjct: 212 SSRRAEAIILRALVGQHASSDTLGMFREMYKRGELDDTHVEIDSALLDGSGSSGAGGGSG 271

Query: 174 SDISNFDIPGGAS--VGILNLSELFSKVMGSGRKKKIRMS-----------VQKCYPELM 220
                   PGG S    +      F + +  G   ++ +            V +    L 
Sbjct: 272 FGGQLDFGPGGVSCWKAVCATGPGFWRPLPGGAGGRLGVRLLFPSYLALCQVSEARSLLE 331

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDLLP 277
             ES++L+  D V R++I+  E  GIVF+DE DKIV   SG    G GVS EGVQRDLLP
Sbjct: 332 EAESEKLLSSDQVTREAIRAAEQDGIVFIDEIDKIVDPSSGRVVTGGGVSSEGVQRDLLP 391

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           ++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L E+QGR P+RV LK L   DF  I
Sbjct: 392 IIEGSVVPTKHGNVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRVELKGLTAEDFYRI 451

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++N++ Q +EL+ TE + L FT+ +I A++ +A   N  + +IGARRL TV+ERVL
Sbjct: 452 LTEPQNNMLRQQQELLATEAVQLVFTDGAIRAISTLAEQANRLLDNIGARRLHTVLERVL 511

Query: 398 EDISFSASD---------LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            DISF A +          Q    V+D + V   + D   + D+  ++L
Sbjct: 512 ADISFGAPERVAEARREGRQTYEYVVDEQLVHRKLDDLLKKQDLSRYVL 560


>gi|99034191|ref|ZP_01314270.1| hypothetical protein Wendoof_01000935 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 396

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/397 (51%), Positives = 292/397 (73%), Gaps = 4/397 (1%)

Query: 44  PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           P  LRDE++PKNIL++G TGVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ II
Sbjct: 1   PFPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSII 60

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
           RDLVD AI +V+E  R  + ++A I AE+ I++++VG+ AT  ++++FR++LR+ E  D 
Sbjct: 61  RDLVDAAIVLVKEKARKALAKKALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDG 120

Query: 164 EIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELM 220
           E+ I V ++ S +  FDIPG  G  VG++N++E+  K+   S + K I + V++    L+
Sbjct: 121 EVSINVRESKSMLPTFDIPGMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILI 180

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +ES+RL+D D + +++I +V N GIVFLDE DKI AR    G  V+REGVQRDLLPL+E
Sbjct: 181 NEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLE 239

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+QGR P+RV LK+L + D   IL +
Sbjct: 240 GTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKE 299

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ES+L+ QY  LMKTE + L+FT+D I  +A++A  +N  V +IGARRL TVME++L++I
Sbjct: 300 PESSLLKQYIALMKTENVTLEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEI 359

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF AS+   +  +ID++YV+  +     + D+  FIL
Sbjct: 360 SFIASEKNSEKFIIDSKYVKDKLESISKQLDLSKFIL 396


>gi|260583820|ref|ZP_05851568.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158446|gb|EEW93514.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella
           elegans ATCC 700633]
          Length = 468

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 299/473 (63%), Gaps = 41/473 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M    + +PRE+V ELD++I+GQ  AKRA+A+ALRNR+RR  L  +++ E+ PKN+L++G
Sbjct: 1   MNSKISKTPREVVQELDQFIVGQASAKRALAVALRNRYRRLLLDEEMQKEVTPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT ++RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI+IV++ +++
Sbjct: 61  PTGVGKTELARRLAKLVDAPFVKVEATKFTEVGYVGRDVESMVRDLVENAISIVQKQKQE 120

Query: 121 EVREQASINAEERILDALVG------------------------------------KTAT 144
           +VR QA   A  ++   L                                          
Sbjct: 121 DVRPQAYDKAVRKLAKILKPGIMKKVANPQQDSLMNLFQSMGLPKTDLPQEEKEEVTEEI 180

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           + +R    ++LR+G + ++E+ IEV +                 ++ +  +  + M   +
Sbjct: 181 AASRREIEQQLRNGLLKNQEVTIEVEEKPLR---MAGNSNGMEQMMQIQSMLDQ-MTPKK 236

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           + K  +SV++    L   E+D+L++ D VH +++++ E  GI+F+DE DKI A+   NG 
Sbjct: 237 RSKRTVSVEEALDILTEQEADQLVNKDDVHAEALKLAETSGIIFIDEIDKIAAK-GHNGG 295

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSREGVQRD+LP+VEGS V TKYG+I TDHILFIASGAFHV++P+DL+PE+QGRFP+RV
Sbjct: 296 EVSREGVQRDILPIVEGSQVQTKYGAIQTDHILFIASGAFHVAKPSDLMPELQGRFPIRV 355

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L+K DF  ILT+ ++ L+ QYK L+ TE + + FT++++ ALA  A  +NS + +I
Sbjct: 356 ELQDLSKEDFERILTEPKNALLKQYKALLATENVEVIFTKEAVSALARTAFEVNSNMENI 415

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL T++E +LE++ F A  +Q  ++ I  +YV   +    ++ D+  +IL
Sbjct: 416 GARRLHTILETLLEELLFEAPQMQMGSIQITEQYVDSKLNTITADRDLSRYIL 468


>gi|330822067|ref|XP_003291622.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum]
 gi|325078187|gb|EGC31852.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum]
          Length = 491

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/434 (41%), Positives = 271/434 (62%), Gaps = 4/434 (0%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N +P +I+++LD YIIGQ +AK++V+ ALR RWRR+++   +R ++ PKNIL++GPTGVG
Sbjct: 60  NLNPNQILNKLDEYIIGQANAKKSVSSALRLRWRRKRVDPSIRADVSPKNILMIGPTGVG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +  APFIKVE TK+TE+GY G +V+ II+DL+DVAI+ ++    +  +  
Sbjct: 120 KTEIARRLAAIVNAPFIKVEATKYTEVGYHGPDVDTIIKDLIDVAISNIKSKIAESHKAN 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
              + E+ I+  ++G   ++ + E   K  R+  I    ++I+V ++     +  I    
Sbjct: 180 IEADVEKEIITNILGPNGSNGSIEELTKLYRNKSIETIMVEIDVPNSFDKQHSSSIQLDD 239

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
               + L  L          KK +++V +    L +   ++      V + +IQ VE  G
Sbjct: 240 ESPFIRL--LVPGAASEKNSKKRKVTVSEARAILEKTYREKYTVSQDVTKLAIQSVEQNG 297

Query: 246 IVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           IVFLDE DKI        NG   S +GVQRDLLP++EG +VSTKYG ++T  ILFIASGA
Sbjct: 298 IVFLDEIDKICTPRENYKNGGDASSDGVQRDLLPIIEGCNVSTKYGMVDTSKILFIASGA 357

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH S+P+DL+ E+QGR P+RV LK L + DF  ILT+  +N I Q + LMKTE I L FT
Sbjct: 358 FHNSKPSDLISELQGRLPIRVELKPLEEEDFYRILTEPRNNQIKQQQALMKTENIDLQFT 417

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E+++  +A +    N+ + ++GARRL  ++ER++EDISF+    +++TV I  E VR  +
Sbjct: 418 EEALREVAKITFESNAQIQNLGARRLHGIIERIIEDISFNCHLYKDQTVTIGVEDVRKKL 477

Query: 424 GDFPSETDMYHFIL 437
            D   +TD+  +I+
Sbjct: 478 SDLLLKTDLSKYII 491


>gi|66805881|ref|XP_636662.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4]
 gi|60465050|gb|EAL63156.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4]
          Length = 694

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/436 (42%), Positives = 274/436 (62%), Gaps = 12/436 (2%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PR+IVS LD Y+IGQ DAKRA++IALRNRWRR++L A ++ ++ PKNIL++GPTGVG
Sbjct: 267 NLLPRDIVSGLDEYVIGQSDAKRAISIALRNRWRRKRLDASMKPDVYPKNILMIGPTGVG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA++  APF+KVE TK+TE+G+ G +V+ IIRDL++ +I+ ++    +  +  
Sbjct: 327 KTELARRLAKIINAPFVKVEATKYTEVGFHGPDVDTIIRDLIEASISNIKTKIANSHKAS 386

Query: 126 ASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              + E+ ++ +L+G     ++ T E   KK R+G++   EI+IEV+  S         G
Sbjct: 387 IEADVEKNVISSLIGLQNDLSAITIEELLKKYREGQLDSVEIEIEVSSDSK--------G 438

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                           +     K  ++++ +      +   D       V + +IQ  E 
Sbjct: 439 SLGQAYDENIAKLLSAIDKQPSKIKKVTIAEAKEIFEKQYRDLYTVSQDVTKLAIQSAEQ 498

Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            GIVFLDE DKI        NG   S +GVQRDLLP+VEG  VSTKYG I+T  ILFIAS
Sbjct: 499 NGIVFLDEIDKICTSRESIKNGGDASTDGVQRDLLPIVEGCMVSTKYGQIDTSRILFIAS 558

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH ++P+DL+ E+QGR P+RV LK L + DF  ILT+ ++N I Q K L+KTE I L+
Sbjct: 559 GAFHNTKPSDLISELQGRLPIRVELKPLEQKDFYKILTEPKNNQIQQQKALLKTEDIQLE 618

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+D++  +A +A   N+ V ++GARRL  ++ER++EDISF+    + KTVV+D   +R 
Sbjct: 619 FTDDALLEVAKIAFEANAQVQNLGARRLHGIIERIVEDISFNCDIHKGKTVVLDTPDIRK 678

Query: 422 HIGDFPSETDMYHFIL 437
           H+ +   +TD+  +I+
Sbjct: 679 HLSELLFKTDLSKYII 694


>gi|328950838|ref|YP_004368173.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451162|gb|AEB12063.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus
           hydrothermalis DSM 14884]
          Length = 417

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 199/433 (45%), Positives = 281/433 (64%), Gaps = 17/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
              +PREIV ELD+YIIGQ  AKRAVA+ALRNR+RR++LPA++  E++PKNIL++GPTGV
Sbjct: 2   TELTPREIVQELDKYIIGQAAAKRAVAVALRNRYRRKRLPAEMAREVIPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLA APF+KVE TKFTE+GYVGR+V+ I+RDL +VA  +V + + + V E
Sbjct: 62  GKTEIARRLARLARAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMQEKTEAVAE 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEERI + L                +R G   D  +++EVA+ +       +   
Sbjct: 122 RALARAEERIAELLRVSPYD----------VRSGRYDDHLVEVEVAEEAQLP---FMGMM 168

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +  +  L+++ S  +   R ++     ++    L   E++ +ID + V +++++  +  
Sbjct: 169 GAEQMQGLTDMLSSFLPKRRVRRRMKV-REAREVLKAQEAEMMIDKEEVTQEAVRRAQED 227

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DKI   D   G  VS EGVQRDLLP+VEG+ V+T+ G ++T+H+LFI +GAF
Sbjct: 228 GIVFIDEIDKIAGSDKIQGPDVSGEGVQRDLLPIVEGTVVNTRLGPVSTEHVLFIGAGAF 287

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DL+PE+QGRFP+RV L  L   DF  ILT TE++LI QY  L+ T+GI L+FT 
Sbjct: 288 HVAKPSDLIPELQGRFPIRVELTELTAEDFARILTSTENSLIRQYTALLGTDGIELEFTP 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           ++I A+AD A   N  + DIGARRL TV+ERVLE+ISF         V I  EYV   + 
Sbjct: 348 EAIRAIADYAYRANRELEDIGARRLHTVLERVLEEISFQ---TDLGRVTITKEYVEERLS 404

Query: 425 DFPSETDMYHFIL 437
                 D+  +IL
Sbjct: 405 PVMGSEDLSRYIL 417


>gi|149919851|ref|ZP_01908327.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
 gi|149819298|gb|EDM78731.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
          Length = 491

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 212/478 (44%), Positives = 300/478 (62%), Gaps = 46/478 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR  V ELDR++IGQ  AKRAVAIALRNRWRRQQ+  DLRDE+ PKNI++VGPTGVG
Sbjct: 14  ELTPRRAVKELDRFVIGQHKAKRAVAIALRNRWRRQQVEGDLRDEISPKNIIMVGPTGVG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L GAPF+K+EV+KFTE+GYVGR+V+ +IRDLV++A  +VRE +  +V E 
Sbjct: 74  KTEIARRLAKLTGAPFVKIEVSKFTEVGYVGRDVDSVIRDLVEMAAKLVREEKERDVWEA 133

Query: 126 ASINAEERILDALVGKT---------------------------------ATSNTREVFR 152
           A   A+E ILD L+  +                                   S +R+  R
Sbjct: 134 ARAEADEAILDILLPPSPGTGTSSGKGEAGYGNHGYTQRPDDAAKASAKPKNSASRDKLR 193

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS-------------VGILNLSELFSKV 199
           K L +G++  +E+++E+ +    +       G               +  L+        
Sbjct: 194 KLLAEGKLDLREVEVEIEEEGGGLQGLPGLPGGLGGPGLGGGSPGGGMDGLSDQLGELLG 253

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD 259
               R KK + +V +    L + ++  L+D D V R++++  E  G+VFLDE DKI +R+
Sbjct: 254 GLGKRTKKTKTTVAEARELLAQQKARSLVDRDEVRREAVRRAEELGVVFLDEIDKICSRE 313

Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
           +  G  VSREGVQRDLLPLVEGS+VSTKYG + +DH+LFIA+GAFH+++ +DL+PE+QGR
Sbjct: 314 NARGADVSREGVQRDLLPLVEGSTVSTKYGPVRSDHVLFIAAGAFHMAKVSDLIPELQGR 373

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FP+RV L SL +++F  IL DT+++L+ QY  L+ TEG+ ++F  D+I  LA VA   N 
Sbjct: 374 FPIRVELDSLGEAEFVQILRDTDNSLLKQYAALLGTEGVTVEFGADAIAELAKVAATAND 433

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            + +IGARRL TV+E+VL+++SF AS++   TV I A YVR  IG    + D+   IL
Sbjct: 434 QLENIGARRLHTVLEQVLDELSFEASEVGNATVQITASYVRERIGGLLEDRDLSRHIL 491


>gi|124506697|ref|XP_001351946.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum
           3D7]
 gi|23504974|emb|CAD51757.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum
           3D7]
          Length = 922

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 191/439 (43%), Positives = 286/439 (65%), Gaps = 9/439 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L++YIIGQ +AK+ VA ALR RWRR Q+  D++ +++PKNIL++GPTGVGK
Sbjct: 485 LYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRIQVSDDMKKDIIPKNILMIGPTGVGK 544

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E+REQA
Sbjct: 545 TEIARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQA 604

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISNFDIPGG 184
               E  IL +L+G       + ++RK L+DG + DK I I++ +   ++  SN  +   
Sbjct: 605 EETVENIILYSLLGNIKEEE-KNIWRKYLKDGSLDDKVISIDIPNYINNNIFSNDSVENA 663

Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
               + N   + S K++     K   K  M++++   +L++ E D  I+ DT+ + +I  
Sbjct: 664 VKEALSNHQNIKSVKIIHQNINKQSDKKTMTIREARQKLLQLEIDSSINQDTILKTAINS 723

Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           VE  GIVF+DE DKI ++ +   NG   S EGVQRDLLPL+EG  ++TKYG+INT++ILF
Sbjct: 724 VEEEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 783

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IASGAF   +P D+L E+QGR PV V L SL   DF  ILT T +NL+ Q   L+KTEGI
Sbjct: 784 IASGAFQRVKPNDMLNELQGRLPVHVTLSSLTIKDFIDILTKTHNNLLQQNIALLKTEGI 843

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+D+I+ +A+ A ++N  V +IG RRL T++E+++EDI++   +   +++VID + 
Sbjct: 844 DLKFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNQSIVIDKDK 903

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +  F  + D+  +I+
Sbjct: 904 VNKSLEGFIKQYDLKKYII 922


>gi|312879578|ref|ZP_07739378.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas
           paucivorans DSM 12260]
 gi|310782869|gb|EFQ23267.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas
           paucivorans DSM 12260]
          Length = 470

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 213/465 (45%), Positives = 300/465 (64%), Gaps = 34/465 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR +V+ LDRYI+GQ  AKRAVA+ALRNR RR++LP +L  E+ PKNIL+VGPTGVG
Sbjct: 7   SLTPRTVVAYLDRYIVGQDKAKRAVAVALRNRIRRRRLPEELAREVSPKNILMVGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLARL  APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VR    +EV+E 
Sbjct: 67  KTEIARRLARLVEAPFVKVEATKFTEVGYVGRDVESMIRDLVEASVQMVRRRLIEEVQEP 126

Query: 126 ASINAEERILDALVGKTATSN--------------------------------TREVFRK 153
           A+  AEERILDAL+ +  T                                  TRE  R+
Sbjct: 127 AARAAEERILDALLPRPKTEAAVPDFLRLFGAGRETPPPAASPAPPEPEVREGTREKLRE 186

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            LR G++  + +++EV + S         GG     LNL EL   +M   R K+  ++V+
Sbjct: 187 LLRAGKLDGRSVEVEVPEGSRVGMTLMGAGGLEEMGLNLGELLGGLM-PKRTKRKTVTVE 245

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQ 272
           +    L  +E+++L+D + V R+++   E  GI+F+DE DKI    SG+G   VSREGVQ
Sbjct: 246 EARRLLQAEEAEKLVDQEAVVREAVAKAEQEGILFVDEIDKIAGGGSGHGGPDVSREGVQ 305

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RDLLP+VEG  V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGR P+RV L+ L + 
Sbjct: 306 RDLLPIVEGCVVQTKYGPVQTDHMLFIAAGAFHKTKPSDLVPELQGRLPIRVELQPLREE 365

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   IL + ES+L+ QY+ L+ TEG+ L F E  + ALA +A  +N  + DIGARRL T+
Sbjct: 366 DLVRILGEPESSLVRQYEALLGTEGVRLRFEESGLRALAALAARMNRDLEDIGARRLHTL 425

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE+ISF A + +E+ V +DA YV   +G    + +   ++L
Sbjct: 426 LEQLLEEISFQAPETEEQDVTVDAPYVEGRLGPLSEDREARKYLL 470


>gi|302764596|ref|XP_002965719.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii]
 gi|300166533|gb|EFJ33139.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii]
          Length = 489

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 189/438 (43%), Positives = 280/438 (63%), Gaps = 32/438 (7%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P ++V  LDRYI+GQ  AKRAVA+A R R+ R                        GK
Sbjct: 77  LTPAKVVEVLDRYIVGQTAAKRAVAVAFRMRFSRAWC--------------------CGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+  R ++ ++ 
Sbjct: 117 TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 176

Query: 127 SINAEERILDALVGKTATS------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             + E+RILD LVG            + ++FRK  R+G I +++I ++V +    +    
Sbjct: 177 EKSVEDRILDVLVGVQQEEISEKSLTSMDMFRKLYREGAIDNRKIQLDVPEGRVRLPVDV 236

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           +  G     L +++L  KV+ S + ++  ++V +  P L   E ++ +  D + +D+IQ+
Sbjct: 237 MGNG-----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAIQL 291

Query: 241 VENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            E+ GIVF+DE DKIV       G   S EGVQRDLLP++EGS V+TKYG++NTDHILFI
Sbjct: 292 TESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHILFI 351

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            SGAFH  +P+D+L E+QGR P+RV LK+L + D   ILT+ E N++ Q + L++TEG+ 
Sbjct: 352 CSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLETEGVE 411

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FTED++  LA+VA  +N ++ +IGARRL TV+ERV+EDISFSA +   + ++ID E V
Sbjct: 412 LIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKEKV 471

Query: 420 RLHIGDFPSETDMYHFIL 437
           R  +GD  ++ D+  F+L
Sbjct: 472 RKSVGDLLNKMDLSKFVL 489


>gi|224532088|ref|ZP_03672720.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana
           VS116]
 gi|224511553|gb|EEF81959.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana
           VS116]
          Length = 448

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 187/442 (42%), Positives = 291/442 (65%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVEELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APF+KVE TK+TE+GYVGR+VE ++RDL+ +A+N+V++     VRE A +
Sbjct: 71  IARRLSKLIKAPFLKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKDEMYSTVREDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+D+L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVDSLFKGSGNSKNIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E+++D +A++  N+N    ++GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAVDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|291296104|ref|YP_003507502.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber
           DSM 1279]
 gi|290471063|gb|ADD28482.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber
           DSM 1279]
          Length = 417

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/434 (44%), Positives = 281/434 (64%), Gaps = 18/434 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV ELD++I+GQ  AKRAVA+ALRNR RR++LP +L  E+MPKNIL++GPTGV
Sbjct: 1   MNLTPAEIVRELDKHIVGQAAAKRAVAVALRNRIRRKKLPPELAREVMPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + A  +V +  + +V  
Sbjct: 61  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEAAYQLVMQEMKAKVEG 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEE +   L                LR G  +D+ I+IEVA+ +  +    + GG
Sbjct: 121 RAQNLAEEEVASILRVSPLE----------LRTGRYNDQLIEIEVAEEA-RLPMMGMFGG 169

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +   +L ++   +M   + ++     ++    L   E++RL+D +   +++++  +  
Sbjct: 170 EQMQ--SLQDMLKGLMPQRKVRRKVRV-KEALEILKNQEAERLVDKEEATQEALRRAQEE 226

Query: 245 GIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           GIVF+DE DKI   + +  G  VS EGVQRDLLP+VEG+ VST+ G ++TDH+LFIA+GA
Sbjct: 227 GIVFIDEVDKIARGKGAVGGPDVSGEGVQRDLLPIVEGTVVSTRLGPVSTDHVLFIAAGA 286

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DL+PE+QGRFP+RV L+ L  ++F  IL + E++LI QY+ L+  +   L FT
Sbjct: 287 FHVSKPSDLIPELQGRFPIRVELEPLGPAEFERILREPENSLIKQYQALLAADETELHFT 346

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            ++I A+A  A   N  + DIGARRL TV+ERVLE++SF         V +  EYV   +
Sbjct: 347 PEAIQAVARFAHQANQELEDIGARRLATVLERVLEEVSFQ---TSLGRVEVTKEYVEARL 403

Query: 424 GDFPSETDMYHFIL 437
            D  +  D+  +IL
Sbjct: 404 KDVLASHDLSRYIL 417


>gi|315453297|ref|YP_004073567.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179]
 gi|315132349|emb|CBY82977.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/447 (41%), Positives = 279/447 (62%), Gaps = 17/447 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +    +P+EIV  LD YII Q+DAK+ +AIALRNRWRR QLP +L++E+ PKNIL++G T
Sbjct: 1   MKLEMTPQEIVDYLDDYIIEQKDAKKMIAIALRNRWRRLQLPKELQEEVTPKNILMIGST 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV  +IN+V    ++  
Sbjct: 61  GVGKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVATSINLVENEHKERN 120

Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           RE+      ERI   L+           K   ++  E  ++K++ G +   +I+IE+   
Sbjct: 121 REKIEELIVERIAKKLLPALPNGVSETKKEEYASNFEKTKEKIKSGALDHVQIEIELRKK 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMD 231
                  +        I+ + E   KV+    +K    MS+++    L  D S  ++DM+
Sbjct: 181 H-----LEGDFNVPPEIIKVQESLIKVLNREGEKVSKEMSIKEAKEALRHDVSQTILDME 235

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            V  + ++     G++F+DE DKI      G+    S+EGVQRDLLP+VEGS ++TKYG 
Sbjct: 236 RVQAEGVERAMQSGVIFIDEIDKIAVGVKEGSRQDPSKEGVQRDLLPIVEGSVINTKYGP 295

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           + TDHILFIA+GAF +S+P+DL+PE+QGRFP+RV L+SL++     ILT T+S++I QY+
Sbjct: 296 VATDHILFIAAGAFQLSKPSDLIPELQGRFPLRVELESLSEEIMFAILTRTKSSIIKQYQ 355

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  EG+ L F  +++  LA ++   N    DIGARRL T +E+VLED+SF+AS  + +
Sbjct: 356 ALLSVEGVELVFDPEALRELARLSYLANQNAEDIGARRLHTTIEKVLEDLSFNASSYKGQ 415

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            V+I  E V   + +     D   FIL
Sbjct: 416 QVLITKENVAKKLENLVDNVDRARFIL 442


>gi|259046720|ref|ZP_05737121.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella
           adiacens ATCC 49175]
 gi|259036616|gb|EEW37871.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella
           adiacens ATCC 49175]
          Length = 468

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 196/473 (41%), Positives = 301/473 (63%), Gaps = 41/473 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+   + +PRE+VSELD++I+GQQDAKRA+A+ALRNR+RR  L  +++ E+ PKN+L++G
Sbjct: 1   MQANISKTPREVVSELDQFIVGQQDAKRALAVALRNRYRRLLLDEEMKKEVTPKNLLMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT ++RRLA+L  APF KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +++
Sbjct: 61  PTGVGKTELARRLAKLVDAPFAKVEATKFTEVGYVGRDVESMVRDLVENAIQIVTKLKQE 120

Query: 121 EVREQASINAEERILDALVG------------------------------------KTAT 144
           EV+ QA   A +++   L                                          
Sbjct: 121 EVKLQAFDKAVKKLAKILKPGIMKKVSNPQQDSLFNMFQQMGIQNPGLEPEMKEEVTEEI 180

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           + +R    ++LR+G +  KE+ IE+ +           G     ++ +  +  + M   +
Sbjct: 181 AQSRRDIEQQLRNGVLDSKEVTIELTEKPMR---MAGSGNQMEQMMQIQSVLDQ-MTPKK 236

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           K    ++V++    L  +E++ LI+ + +H +++++ E  GI+F+DE DKI A+   NG 
Sbjct: 237 KISRTVTVKEALELLTEEEANNLINQEDMHAEALKLAETSGIIFIDEIDKIAAK-GQNGG 295

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
            VSREGVQRD+LP+VEGS V+TKYG INTDHILFIASGAFHV++P+DL+PE+QGRFP+RV
Sbjct: 296 EVSREGVQRDILPIVEGSQVNTKYGVINTDHILFIASGAFHVAKPSDLMPELQGRFPIRV 355

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L+ L+K DF  IL + ++ L+ QYK L+ TE + + FT++++  LA++A  +NST+ +I
Sbjct: 356 ELQDLSKEDFERILMEPKNALLKQYKALLATENVEVVFTKEAVSKLAEIAFEVNSTMENI 415

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL T++E VLE++ F A  +Q  ++ I  +YV   +     + D+  +IL
Sbjct: 416 GARRLHTILETVLEELLFEAPTMQMGSIQITEQYVESKLNAIREDQDLTKYIL 468


>gi|15594640|ref|NP_212429.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia
           burgdorferi B31]
 gi|2688171|gb|AAC66653.1| heat shock protein (hslU) [Borrelia burgdorferi B31]
          Length = 455

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 18  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 77

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 78  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 137

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 138 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 197

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 198 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 255

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 256 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 314

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 315 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 374

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 375 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 434

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 435 LDYVNKKIQ-INEQKDLNYYII 455


>gi|224534246|ref|ZP_03674824.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii
           A14S]
 gi|224514348|gb|EEF84664.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii
           A14S]
          Length = 448

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 189/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+ +E   + VRE A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMAKEEMYNTVREDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  DF+ IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDFKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A+   N+N    ++GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAIDRIAEFTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|111115120|ref|YP_709738.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia afzelii
           PKo]
 gi|216263956|ref|ZP_03435950.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii
           ACA-1]
 gi|110890394|gb|ABH01562.1| heat shock protein [Borrelia afzelii PKo]
 gi|215980000|gb|EEC20822.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii
           ACA-1]
          Length = 448

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 190/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|225552138|ref|ZP_03773078.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1]
 gi|225371136|gb|EEH00566.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1]
          Length = 448

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+Y+IGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYVIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|195941351|ref|ZP_03086733.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi
           80a]
 gi|216264308|ref|ZP_03436300.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           156a]
 gi|221217633|ref|ZP_03589101.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           72a]
 gi|223888752|ref|ZP_03623343.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           64b]
 gi|224533194|ref|ZP_03673794.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           WI91-23]
 gi|224533702|ref|ZP_03674290.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           CA-11.2a]
 gi|225549073|ref|ZP_03770048.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           94a]
 gi|225550095|ref|ZP_03771055.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           118a]
 gi|226320596|ref|ZP_03796156.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           29805]
 gi|3023975|sp|Q44772|HSLU_BORBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
 gi|1165279|gb|AAA85618.1| HsLU [Borrelia burgdorferi]
 gi|215980781|gb|EEC21588.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           156a]
 gi|221192310|gb|EEE18529.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           72a]
 gi|223885568|gb|EEF56667.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           64b]
 gi|224511921|gb|EEF82322.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           WI91-23]
 gi|224512995|gb|EEF83358.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           CA-11.2a]
 gi|225369207|gb|EEG98660.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           118a]
 gi|225370299|gb|EEG99737.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           94a]
 gi|226234015|gb|EEH32736.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           29805]
 gi|312149103|gb|ADQ29174.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           N40]
          Length = 448

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|312148448|gb|ADQ31107.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           JD1]
          Length = 448

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+D+L   ++ S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|219685629|ref|ZP_03540444.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           Far04]
 gi|219672817|gb|EED29841.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           Far04]
          Length = 448

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 293/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEVDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKYKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    D+GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|219684673|ref|ZP_03539616.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           PBr]
 gi|219672035|gb|EED29089.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii
           PBr]
          Length = 448

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 293/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEVDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    D+GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|70952370|ref|XP_745358.1| ATP-dependent heat shock protein [Plasmodium chabaudi chabaudi]
 gi|56525655|emb|CAH76832.1| ATP-dependent heat shock protein, putative [Plasmodium chabaudi
           chabaudi]
          Length = 471

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/441 (42%), Positives = 289/441 (65%), Gaps = 10/441 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GPTGVGK
Sbjct: 31  LYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGK 90

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +     E++EQA
Sbjct: 91  TEIARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKNKMETEIKEQA 150

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                  IL +L+G       +++++K L++G + DK I+I++ +  ++ +N        
Sbjct: 151 EEAVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIINIDIPNYINNNNNMFTNDSVE 210

Query: 187 ----VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                 + N   + S K++     K   K  M++++   +L++ E D  I+ D + + +I
Sbjct: 211 NAVKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDAILKTAI 270

Query: 239 QMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
             VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+INT++I
Sbjct: 271 SSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYI 330

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIASGAF   +P D+L E+QGR PV V+L SL+  DF  ILT T +NL+ Q   L+KTE
Sbjct: 331 LFIASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIKDFIEILTKTHNNLLKQNIALLKTE 390

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++       KT+VID 
Sbjct: 391 GIDLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKIMEEINYDVHKNANKTIVIDK 450

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           E V+  +  F  + D+  +I+
Sbjct: 451 EVVKKSLEGFIKQFDLKKYII 471


>gi|51598555|ref|YP_072743.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia garinii
           PBi]
 gi|51573126|gb|AAU07151.1| heat shock protein [Borrelia garinii PBi]
          Length = 448

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/442 (42%), Positives = 292/442 (66%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVLELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E   + VR+ A +
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYNTVRDDALV 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ +  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP+++GS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIMKGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VMERVL D+ F     + K   I+
Sbjct: 368 YNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|226321613|ref|ZP_03797139.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           Bol26]
 gi|226232802|gb|EEH31555.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           Bol26]
          Length = 448

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 189/442 (42%), Positives = 291/442 (65%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|218249642|ref|YP_002374818.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           ZS7]
 gi|218164830|gb|ACK74891.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi
           ZS7]
          Length = 448

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/442 (42%), Positives = 291/442 (65%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|315924466|ref|ZP_07920688.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622345|gb|EFV02304.1| ATP-dependent hsl protease ATP-binding subunit HslU
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 477

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/462 (43%), Positives = 281/462 (60%), Gaps = 42/462 (9%)

Query: 1   MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           MK   +  +PR IV EL+RYIIGQ+ AK+AVA++LRNR+RR  LP  +R+E+ PKNI+++
Sbjct: 1   MKREMSELTPRMIVDELNRYIIGQEKAKKAVAVSLRNRYRRSLLPDAIREEITPKNIIMM 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RR+A+L  APFIKVE TKFTE+GYVGR+VE +IRDLV  +I +V++ + 
Sbjct: 61  GPTGVGKTEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMIRDLVTTSIRMVKQEKM 120

Query: 120 DEVREQASINAEERILDALVGKTAT----------------------------------- 144
           D+V+ QA   A   ILDALV +                                      
Sbjct: 121 DDVKTQAEEKANRIILDALVPRRKKAQKQEKLINPFDLLNQNKSPAAVEDAQPELSPEEK 180

Query: 145 ---SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 R    ++L DG++ D+ ID+ + D  +      + G +    + +  +F  + G
Sbjct: 181 HQIETKRSAIAEELADGKLEDEMIDVMLDDDGAKSIGI-MAGMSEDMSIEIGNIFEGLTG 239

Query: 202 SGRKKK-IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
             +KKK   M V +    +   E+ ++IDMD V    ++  E  GI+F+DE DKI+   S
Sbjct: 240 GNKKKKKRTMKVSEARKVIANQEAQKMIDMDEVQEIGVREAEQNGIIFIDEIDKIIDSGS 299

Query: 261 GNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
             G   VSREGVQRD+LP+VEGS+V+TKYG + TD ILFI +GAF+V+   D++PE+QGR
Sbjct: 300 HRGGPDVSREGVQRDILPIVEGSTVNTKYGPVKTDFILFIGAGAFNVANIEDMIPELQGR 359

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           FPV V L+SL + +F  ILT  E+ ++ QY  L++TEGI L F E+++ A+A +A   N 
Sbjct: 360 FPVSVQLESLTEENFVEILTKPENAIVKQYAYLLQTEGIELQFEEEALKAIASIAYAKNE 419

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
              +IGARRL TV E +LE+ISF ASD  E   VID  YV  
Sbjct: 420 EDENIGARRLHTVFEELLEEISFYASDYDEDVFVIDKNYVDS 461


>gi|28317391|tpe|CAD29867.1| TPA: regulatory subunit of the HslVU complex [Trypanosoma brucei]
          Length = 510

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/461 (40%), Positives = 267/461 (57%), Gaps = 30/461 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N  PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPTGVG
Sbjct: 51  NMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPTGVG 110

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  APFIKVE TK+TE+G+ G+NVE II DL   A    +     E  ++
Sbjct: 111 KTEIARRLAKLVDAPFIKVEATKYTEVGFKGKNVESIIEDLYSNAKTKDKRRLEIEREKK 170

Query: 126 ASINAEE---------RILDALVGKTATSN-------------------TREVFRKKLRD 157
           A   A E         R      G +  ++                   T E F++K + 
Sbjct: 171 AHELALEIVFNGWHSCRSASGSFGSSTRNSGSVYSSAEEDKNSSSRDNVTFEEFKEKYK- 229

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +  D  + I+V       +  +    +   +     L       G K ++   V++  P
Sbjct: 230 TQFKDDMVVIDVTQQPKGNTKPNASINSVEMLSVGILLGLGSESRGVKTRVTKRVEEALP 289

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
              ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GVQ+DLLP
Sbjct: 290 LATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGVQQDLLP 349

Query: 278 LVEGSSVSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336
           L+EGS+V+ K G  I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L + D R 
Sbjct: 350 LIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALKEEDIRR 409

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL TV+ERV
Sbjct: 410 ILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLHTVVERV 469

Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 470 MDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 510


>gi|1196314|gb|AAB51406.1| heat shock response protein [Borrelia burgdorferi]
 gi|1234880|emb|CAA65468.1| heat shock protein [Borrelia burgdorferi]
          Length = 448

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/442 (42%), Positives = 290/442 (65%), Gaps = 17/442 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT 
Sbjct: 11  PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I+RRL++L  APFIKVE TK+TE+GYVGR+VE ++RDL+ + +N+V+E     VRE A I
Sbjct: 71  IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIRVNMVKEEMYSTVREDALI 130

Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSS-D 175
             EERI+++L   +  S              +E  RKKLR GE+ D  I+I+++      
Sbjct: 131 KTEERIVESLFKGSDNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQISSKMPFS 190

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                  G      + +  L   +    RKKK  + ++K    ++ +E ++L+D + +  
Sbjct: 191 TIEIFTGGNFEEIDMGIGGLLGNIFD--RKKKRELKIKKAKEIILAEELEKLVDHENISD 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +   VEN GI+F+DE DKI A++  +G  VSREGVQRD+LP++EGS V+TKYG ++T H
Sbjct: 249 IAKSKVENMGIIFIDEIDKIAAKN-RSGNDVSREGVQRDILPIIEGSKVNTKYGIVDTSH 307

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+  D + IL  T+++LI QY  + K 
Sbjct: 308 ILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMFKV 367

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L F+E++ID +A++  N+N    ++GARRL  VME VL D+ F     + K   I+
Sbjct: 368 YDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFEIN 427

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
            +YV   I     + D+ ++I+
Sbjct: 428 LDYVNKKIQ-INEQKDLNYYII 448


>gi|68071657|ref|XP_677742.1| ATP-dependent heat shock protein [Plasmodium berghei strain ANKA]
 gi|56497972|emb|CAI00125.1| ATP-dependent heat shock protein, putative [Plasmodium berghei]
          Length = 600

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/446 (41%), Positives = 292/446 (65%), Gaps = 11/446 (2%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K      P EIV  L++YIIGQ +AK+ VA ALR RWRR QL  D++ +++PKNIL++GP
Sbjct: 156 KNNKCLYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDDDMKKDVIPKNILMIGP 215

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RR++    APFIKVE TKFTE+G+ G++V+QII+DLV++A+   +    +E
Sbjct: 216 TGVGKTEIARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKSKMENE 275

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           ++EQA    +  IL +L+G +     +++++K L++G + DK I+I++    ++ +N   
Sbjct: 276 IKEQAEETVDNIILYSLLGNSIKYEEKQIWKKYLKEGLLDDKIINIDIPSYINNNNNMFT 335

Query: 182 PGGAS----VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTV 233
                      + N   + S K++     K   K  M++++   +L++ E D  I+ D +
Sbjct: 336 NDSVENAVKEALSNHQNIKSVKIIHQNMNKQNDKRTMTIKEAKQKLLQIEIDSSINQDVI 395

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + +I  VE  GIVF+DE DKI ++ S   NG   S EGVQRDLLPL+EG  ++TKYG+I
Sbjct: 396 LKTAINSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNI 455

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
           NT++ILFIASGAF   +P D+L E+Q R PV V+L SL+  DF  ILT T +NL+ Q   
Sbjct: 456 NTNYILFIASGAFQRVKPNDMLNELQ-RLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIA 514

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+KTEGI L+FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++       K+
Sbjct: 515 LLKTEGIDLNFTDDAIESIANAAHDMNTHIENIGVRRLHTIIEKIMEEINYDVHKNANKS 574

Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437
           +VID E V+  +  F  + D+  +I+
Sbjct: 575 IVIDKEVVKKSLEGFIKQFDLKKYII 600


>gi|315929326|gb|EFV08534.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 419

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/424 (41%), Positives = 283/424 (66%), Gaps = 16/424 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ+ AK+ +AIALRNR+RR QL  +L+D+++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+  +R++ ++
Sbjct: 61  GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120

Query: 125 QASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +     E +IL+ L+           +    N+ E  R KLR+G++ +  I+IE++    
Sbjct: 121 KIDEFIENKILEKLLPPLPKGISNEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQN-- 178

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               FD        +  + ++   +    +K K  M ++     L  +  ++++D +++ 
Sbjct: 179 ---MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQESIK 235

Query: 235 RDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            ++++  EN GI+F+DE DKI  +  + N    S+EGVQRDLLP+VEGS+V TK G++ T
Sbjct: 236 SEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGTLKT 295

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+      ILT  +++L+ QY +L+
Sbjct: 296 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYSQLL 355

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           KTE + L+F +++I  +A +A   N  + DIGARRL TV+E++LED+SF A +   K  V
Sbjct: 356 KTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKKFV 415

Query: 414 IDAE 417
           +D +
Sbjct: 416 VDKK 419


>gi|313681855|ref|YP_004059593.1| heat shock protein hslvu, ATPase subunit hslu [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154715|gb|ADR33393.1| heat shock protein HslVU, ATPase subunit HslU [Sulfuricurvum
           kujiense DSM 16994]
          Length = 442

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/444 (42%), Positives = 282/444 (63%), Gaps = 13/444 (2%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N  P+EIV  LD++IIGQ +AK+ +A+ALR R+RR +L   L+DE+MPKNIL++G TGV
Sbjct: 1   MNMIPQEIVDYLDQHIIGQNNAKKTIALALRTRYRRLRLDPPLQDEIMPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLA+L   PFIKVE +K+TE+G+VGR+VE ++RDLV  + ++V+    +  +E
Sbjct: 61  GKTEIARRLAKLMQLPFIKVEASKYTEVGFVGRDVESMVRDLVMTSYSMVKAEHNENNKE 120

Query: 125 QASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSS 174
                  + +   L  +     T E             KK+R+G + D+ ++IE++    
Sbjct: 121 AIEHYIVDILTHKLHPEVPHFPTEEEKARHEISKSELSKKIRNGGMDDRLVEIELSTGGI 180

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + ++ ++P   +    + S++FS +     + K  +SV +    L ++ S++L++ D + 
Sbjct: 181 EFNDTNMPPEIARVQESFSKMFSVI--GKEENKKEVSVAEAKEILRQEASEKLLNHDQIK 238

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           R++++  E  GI+FLDE DKI      +G    S+EGVQRDLLP+VEGS VSTK+GSI T
Sbjct: 239 REALKRTEEGGIIFLDEIDKIAVNSRSDGRNDPSKEGVQRDLLPIVEGSIVSTKFGSIKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           DHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ LN+    LILT  +++L+ QYK L+
Sbjct: 299 DHILFIAAGAFHLTKPSDLIPELQGRFPLRVELEPLNEDALYLILTKPKNSLLEQYKALL 358

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
            TE + L F E +I A+A  A   N    DIGARRL TV+E+VLEDISF+A   +   V 
Sbjct: 359 ATEEMQLSFDEAAIRAMARYAQRANEKTEDIGARRLHTVVEKVLEDISFNAHLHKNSAVT 418

Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437
           +    V   +     + D+  +IL
Sbjct: 419 VTEAMVNTILLPLVEDEDLARYIL 442


>gi|94496357|ref|ZP_01302934.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           SKA58]
 gi|94424103|gb|EAT09127.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp.
           SKA58]
          Length = 372

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/373 (51%), Positives = 270/373 (72%), Gaps = 2/373 (0%)

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
            +T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+ VRE
Sbjct: 2   RQTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRREAVRE 61

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            AS  A  R+LDAL GK A+  TR  FR+K+ + ++++ E++++VAD+ S        GG
Sbjct: 62  AASEAAMARLLDALTGKEASEATRLSFRQKIENDQMNEVEVEVDVADSPSMPMEIPGMGG 121

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             VG++NLS++ SK  G  +KK+ +M V   + +L+ +E D+ +D D V R +I   E  
Sbjct: 122 -QVGMINLSDMMSKAFGQTQKKRRKMRVADAWDKLVEEEQDKRLDQDDVARVAISSAEQN 180

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVFLDE DKI   D   G  VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF
Sbjct: 181 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASGAF 239

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DLLPE+QGR P+RV LK+L + DF  IL+DT+++L+ QY+ L+ TE + +D T 
Sbjct: 240 HVAKPSDLLPELQGRLPIRVELKALTEEDFVAILSDTKASLVAQYRALLATEEVTIDLTP 299

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           + I A+A +A  +NS V +IGARRLQTVME++LED+SF A D + +T+VIDA YV   + 
Sbjct: 300 EGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRRGETLVIDAAYVEKQLS 359

Query: 425 DFPSETDMYHFIL 437
               +TD+  ++L
Sbjct: 360 AVARDTDLSKYVL 372


>gi|320450079|ref|YP_004202175.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus
           SA-01]
 gi|320150248|gb|ADW21626.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus
           SA-01]
          Length = 416

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/433 (42%), Positives = 270/433 (62%), Gaps = 17/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV EL ++I+GQ+ AKRAVA+ALRNR+RR++LP ++  E+ PKNIL++GPTGV
Sbjct: 1   MNLTPAEIVRELSKHIVGQEAAKRAVAVALRNRYRRKKLPPEVAREVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V E  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVMEEMKKKVEE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A              +   +  R    + +R G +    ++++V +      +    G 
Sbjct: 121 KALAL---------AEEELATLLRASVAE-VRAGRLDSLSVEVQVEEE----MSLPFMGV 166

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                        K +   R  + RM+V++    L    ++RLID + +  ++ +  +  
Sbjct: 167 LGGEGFGGMGEMLKGLLPKRPVRKRMTVKEAREVLKNQHAERLIDKEELKEEARRRAQED 226

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+  R+   G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+GAF
Sbjct: 227 GIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAGAF 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DL+PE+QGRFP+RV L  L   +F  IL + E++LI QY EL++ +G  L F E
Sbjct: 287 HVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVFHE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           D++ A+A+ A   N  + DIGARRL TV+ERVLE++SF         V I   YV   + 
Sbjct: 347 DALRAIAEAAYRANQELEDIGARRLATVLERVLEEVSFQ---TDLGRVEITRAYVEQRLE 403

Query: 425 DFPSETDMYHFIL 437
              +  D+  F+L
Sbjct: 404 AVFASPDLTRFVL 416


>gi|218659909|ref|ZP_03515839.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli IE4771]
          Length = 335

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 236/330 (71%), Positives = 280/330 (84%), Gaps = 3/330 (0%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRGEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG- 183
           +A ++AEER+LDALVG TA+  TRE FRKKLRDGE+ DKEIDIEVADT + +  F+IPG 
Sbjct: 122 KAHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGTGMGGFEIPGM 181

Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            GA++G+LNLSE+F K M  GR KK+R +V+  Y +L+RDESD+LID + + R++++  E
Sbjct: 182 PGANIGVLNLSEMFGKAM-GGRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTE 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG
Sbjct: 241 NDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           AFHVS+P+DLLPE+QGR P+RV L++LNK 
Sbjct: 301 AFHVSKPSDLLPELQGRLPIRVELRALNKE 330


>gi|148977244|ref|ZP_01813871.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145963526|gb|EDK28789.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 369

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 186/360 (51%), Positives = 251/360 (69%), Gaps = 16/360 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI +  +    +V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMKKVQFR 122

Query: 126 ASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           A   AEERILDAL+                T +SNTR++FRKKLR+G++ DKEI+++VA 
Sbjct: 123 AEEQAEERILDALLPPARDAWGQNEQSSEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAA 182

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
               +     PG   +    L  +F   +    KKK +M ++  +  L  +E+ +L++ +
Sbjct: 183 PQMGVEIMSPPGMEEM-TNQLQGMFQN-LAGDTKKKRKMKIKDAFKALTEEEAAKLVNQE 240

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +  ++I   EN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS+VSTK+G +
Sbjct: 241 ELKENAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMV 300

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L  QY  
Sbjct: 301 KTDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSANDFKRILTEPKASLTEQYIA 360


>gi|46198572|ref|YP_004239.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus
           HB27]
 gi|55980599|ref|YP_143896.1| ATP-dependent protease ATP-binding subunit HslU [Thermus
           thermophilus HB8]
 gi|46196194|gb|AAS80612.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermus
           thermophilus HB27]
 gi|55772012|dbj|BAD70453.1| heat shock protein HslU [Thermus thermophilus HB8]
          Length = 416

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 188/433 (43%), Positives = 271/433 (62%), Gaps = 17/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV EL ++I+GQ+ AKRAVA+ALRNR+RR++LP ++  E+ PKNIL++GPTGV
Sbjct: 1   MNLTPAEIVRELSKHIVGQEAAKRAVAVALRNRYRRKKLPPEIAREVTPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V E  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDSIVRDLAEASYQLVLEEMKKKVEE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   A           T    +    R    DG   + +++ EVA     +   +  GG
Sbjct: 121 KALALA------EEELATLLRTSVAEVRSGRLDGHFVEVQVEEEVALPFMGVLGGEAFGG 174

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
               +        K +   R  + RM+V++    L    ++RLID + +  ++ +  +  
Sbjct: 175 MGEML--------KGLLPRRPVRRRMTVREAREVLKNQHAERLIDKEELKEEARRRAQEE 226

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+  R+   G  VS EGVQRDLLP+VEG+ VST+ G I+T+H+LFIA+GAF
Sbjct: 227 GIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPISTEHVLFIAAGAF 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DL+PE+QGRFP+RV L  L   +F  IL + E++LI QY EL+K +G  L F +
Sbjct: 287 HVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLKADGTELVFED 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++ A+A  A   N  + DIGARRL TV+E+VLE++SF         V I   YV   + 
Sbjct: 347 EALWAIAQAAHRANQELEDIGARRLATVLEKVLEEVSFQ---TDLGRVEITRAYVEKRLE 403

Query: 425 DFPSETDMYHFIL 437
              +  D+  F+L
Sbjct: 404 AVFASPDLTRFVL 416


>gi|167998406|ref|XP_001751909.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697007|gb|EDQ83344.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 762

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/456 (42%), Positives = 277/456 (60%), Gaps = 49/456 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P  IV  LDRYI+GQQDAKRAVA+ALRNRWRR ++P  LRDE++PKNIL++GPTG GK
Sbjct: 331 LTPVRIVEMLDRYIVGQQDAKRAVAVALRNRWRRHRIPDALRDEIVPKNILMIGPTGCGK 390

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA++A APF+KV      E   V + VE  + D+           +R  V  + 
Sbjct: 391 TEIARRLAKIAYAPFVKVRAKLVKE---VEKAVEARLLDIFMA-------RQRPPVEGE- 439

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                     A+ G  A   T   FRK  RDG + +++I +++ D  S +   +I G + 
Sbjct: 440 ---------SAVPGARADYET---FRKLYRDGALDNRKIQLDIPDGRSRLP-LEIGGVSG 486

Query: 187 VGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            G+  L        KV  S R +++ +++ +  P L   E ++ ++ D + +D+I + E+
Sbjct: 487 FGVNELIFRLPQMEKVFKSQRMERMEITIGEAKPILREIEMEKHLNSDQITKDAILLAES 546

Query: 244 YGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
            GIVF+DE DKIV   ++ +G   S EGVQRDLLP++EGS V+TKYG++NTDHILFI SG
Sbjct: 547 DGIVFIDEIDKIVTNHETRHGADASSEGVQRDLLPIIEGSMVNTKYGNVNTDHILFICSG 606

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AFH  +P+D+L E+QGR P+RV LK L + D   ILT+ E+N+I Q + LMKTE I L F
Sbjct: 607 AFHSCKPSDMLAELQGRLPIRVELKGLGREDLYRILTEPETNMIRQQQLLMKTEDINLVF 666

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY---- 418
           T+D+I+ LA VA  +N +V +IGARRL TV+ERV+EDISF A +   +T  ID E     
Sbjct: 667 TDDAIEELATVAAEVNRSVDNIGARRLHTVIERVVEDISFHAPERAGETYTIDKEVHLLP 726

Query: 419 -----------------VRLHIGDFPSETDMYHFIL 437
                            V+  +GD   ++D+  F+L
Sbjct: 727 LFHNEEHFYGFSLGVDSVQRAVGDLLKKSDLSRFVL 762


>gi|229824240|ref|ZP_04450309.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271]
 gi|229786594|gb|EEP22708.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271]
          Length = 485

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 193/465 (41%), Positives = 293/465 (63%), Gaps = 38/465 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR +V+EL++YIIGQ +AKRA+AIALRNR RR +L   ++ E+ PKNIL++GPTGVG
Sbjct: 26  QLTPRYVVNELNKYIIGQDEAKRAIAIALRNRLRRLKLEPAMQAEVKPKNILMIGPTGVG 85

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA +A APF+KVE TK+TEIGYVGR+VE ++RDLV+ +I +V++ +  EVRE+
Sbjct: 86  KTEIARRLAEIANAPFVKVEATKYTEIGYVGRDVEAMVRDLVEASIRMVKKIKHQEVREE 145

Query: 126 ASINAEERILDALVGKTATSN---------------------------------TREVFR 152
           A   A  R+  AL                                         +R   +
Sbjct: 146 AYERALTRLAKALKPGIKQEKKQQAQPNDFMAMLQQMTQSQEEPQEVVTDDIKVSRRQIK 205

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++LR G I+DKE+ IE+ +    ++N +        ++++   F  +    + K   ++V
Sbjct: 206 EQLRQGLINDKEVTIELEEKKLQLNNLNP---MMEQMMDVQSEFQNLRPKKKIK-RSVTV 261

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L  +ESD L++ D +++ ++++ +N GI+F+DE DKI    S +G  VSR+GVQ
Sbjct: 262 KEALELLTEEESDHLVNQDDINQQALELAQNSGIIFIDEIDKIAT-SSNHGGEVSRQGVQ 320

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS + TKYG I+TDHILFI SGAFHV++P+DL+PE+QGRFP+RV L  L   
Sbjct: 321 RDILPIVEGSDIQTKYGIISTDHILFIGSGAFHVAKPSDLIPELQGRFPIRVQLTDLKVD 380

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DFR IL +    ++ QY+ ++ TEG+ + FT+ +ID +A+ AV LN +  +IGARRL T+
Sbjct: 381 DFRRILQEPAHAILHQYQAMLATEGVEVIFTDSAIDKMAEYAVLLNESTDNIGARRLHTI 440

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E VLE++ + A+D+    + I+  YV   +       D+ H+IL
Sbjct: 441 VETVLEELLYEAADMNMGRIEINGAYVSQRLDKIVESPDLSHYIL 485


>gi|218296680|ref|ZP_03497398.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus
           Y51MC23]
 gi|218242993|gb|EED09526.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus
           Y51MC23]
          Length = 416

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 184/433 (42%), Positives = 270/433 (62%), Gaps = 17/433 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P EIV EL ++I+GQ+ AK+AVA+ALRNR+RR++LP ++  E+ PKNIL++GPTGV
Sbjct: 1   MNLTPAEIVKELSKHIVGQEAAKKAVAVALRNRYRRKKLPPEVAREITPKNILMIGPTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + +  +V E  + +V E
Sbjct: 61  GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVLEEMKKKVEE 120

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A   AEE +   L    A   +  +           D        +    +    + GG
Sbjct: 121 KALAFAEEELATLLRASIADVRSGRL-----------DGLYVEVQVEEEVGLPFMGVLGG 169

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            + G +       K +   R  + RM+V++    L    ++RLID + +  ++ +  +  
Sbjct: 170 EAFGGMGE---MLKGLLPKRPVRRRMTVREAREVLKNQHAERLIDKEELKEEARRRAQEE 226

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           GIVF+DE DK+  R+   G  VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+GAF
Sbjct: 227 GIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAGAF 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           HV++P+DL+PE+QGRFP+RV L  L   +F  IL + E++LI QY EL++ +G  L F +
Sbjct: 287 HVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVFED 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++  +A  A   N  + DIGARRL TV+ERVLE++SF     +   V I   YV   + 
Sbjct: 347 EALWTIAQAAHRANQELEDIGARRLATVLERVLEEVSFQ---TELGRVEITRAYVEKRLE 403

Query: 425 DFPSETDMYHFIL 437
              +  D+  F+L
Sbjct: 404 AVFASPDVTRFVL 416


>gi|237736692|ref|ZP_04567173.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420554|gb|EEO35601.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 437

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/439 (41%), Positives = 284/439 (64%), Gaps = 4/439 (0%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLV 59
           M +    +P++IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+
Sbjct: 1   MGINKELTPKKIVEELNKYIISQDEAKKNVAISLRNRDRRKMIEDENLRKEITPKNIILI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TGVGKT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DLV +    ++E + 
Sbjct: 61  GSTGVGKTEIARRIAKIANAPFLKVEATKYTEVGYVGKDVESIIKDLVALTYRKMKEEKY 120

Query: 120 DEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
             ++  +   A ER+   L    T     +E+ +K+L +G+    EI+I+     +DI  
Sbjct: 121 GLLKLSSLDAAIERVAKILKPYDTLNDEDKEIIKKELAEGKYDHTEIEIDRPKKDNDIPI 180

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            ++  G+      + ++ S +   G+ KK+  SV       + +E ++ ID++ + ++ +
Sbjct: 181 IEVISGSEDIGGLVDQMMSTL--PGKLKKMTTSVLNALNLFLEEEVEKKIDLEALAQEVV 238

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VEN GI+F+DE DKI  R+      VSR+GVQRD+LP+VEGS+V TKYG + TDHILF
Sbjct: 239 ENVENNGIIFIDEIDKITEREGSGKGDVSRQGVQRDILPIVEGSTVMTKYGPVRTDHILF 298

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IA+GAF  S P+DL+PE+QGRFP+RV L++L K DF  ILT+ E NL+ QYK ++  + +
Sbjct: 299 IAAGAFSQSSPSDLMPELQGRFPIRVKLQNLEKEDFVKILTEVEYNLLEQYKAMLSVDNV 358

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+ +I+ +A++    N  + +IGARRL +V+E +L DI F A   ++K + ID  +
Sbjct: 359 ELTFTKGAIEKIAEITAIQNEKIENIGARRLASVVEELLRDIMFEAPYKEKKKISIDINF 418

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+  +     E  +  FIL
Sbjct: 419 VKKVLKKEIEEESLDKFIL 437


>gi|325182050|emb|CCA16503.1| ATPdependent hsl protease ATPbinding subunit hslU pu [Albugo
           laibachii Nc14]
          Length = 502

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/453 (39%), Positives = 270/453 (59%), Gaps = 20/453 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63
               P EIV+ELDR++IGQ++AK AVAIALRNRWRR+ +  + LR E+ P NIL+ GPTG
Sbjct: 50  MEMVPGEIVAELDRHVIGQKEAKCAVAIALRNRWRRRHIQNESLRAEVSPMNILMSGPTG 109

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT I+RRLA++  +PF+KVE TK+TE+G  G + + +I+DL++VAI+  RE+ R    
Sbjct: 110 SGKTEIARRLAKMTNSPFLKVEATKYTEVGIYGASADSMIKDLMNVAIDAERENARKRCS 169

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI------- 176
             A   A +R++  +   +++   R   R+ +  G +    I I++ + S+         
Sbjct: 170 RAARERALDRLVKHIHESSSSQRNRPNLREDIDSGRLDSVMISIQLRNISNRPKGPRGSM 229

Query: 177 -SNFDIPGGASVGILNLSELFSK-----VMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               +IP      + NL+ + +K            K  R+SV+     L  +E++ +I+ 
Sbjct: 230 DMMMEIPPEFEQMVKNLNSMMNKHANTSSSQGPFAKAERLSVKDALQRLKFEEAEDIINE 289

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR------EGVQRDLLPLVEGSSV 284
           D V  ++++ V+N GI+FLDE DK+      +  G         EGVQ++LL L EG  V
Sbjct: 290 DEVIENALENVQNNGIIFLDEIDKLAESSDSSMAGRGGGQFRKGEGVQKELLALTEGCVV 349

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            T++G I+T+HILFIASGAFH   P+DL+PE+QGR P+RV L  L   ++  IL +TE N
Sbjct: 350 RTRHGMIHTNHILFIASGAFHKCSPSDLIPELQGRLPIRVTLSPLGAPEYERILKETEYN 409

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ Q + L++TEGI L FT+D+I  +A +   +NS   DIGARRL T++ +V ++ISF A
Sbjct: 410 LLQQMQALLETEGIQLVFTDDAIVEMAAITAQINSQSDDIGARRLSTIVSKVTDEISFHA 469

Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +   T  ID  YVR  +     +TD+  +IL
Sbjct: 470 PKMTGMTHQIDKAYVRQRLSSVMEKTDLRKYIL 502


>gi|301096597|ref|XP_002897395.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Phytophthora infestans T30-4]
 gi|262107086|gb|EEY65138.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Phytophthora infestans T30-4]
          Length = 482

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 181/448 (40%), Positives = 277/448 (61%), Gaps = 19/448 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKT 67
           P ++V  LD++I+GQ++AK+AVA+ALR+RWRR+QL  D LR E+ P NIL+ GPTG GKT
Sbjct: 35  PEDVVRALDKFIVGQEEAKKAVAVALRSRWRRRQLQNDALRAEISPMNILMSGPTGSGKT 94

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+++G+PF+KVE TKFTE+G  G N + +I+D+VDVA+N+ R   +      + 
Sbjct: 95  EIARRLAKISGSPFLKVEATKFTEVGIYGANADSMIKDIVDVAVNMERAEAQKLHATASR 154

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG---- 183
             A +R++D L  K  +  +R   R+ +  G+  ++++ +++   S+             
Sbjct: 155 ERAIDRLVDLLDHKKLSDISRADLREDIATGKADNRKVRVQLKPLSNKTRPSSANPEMMM 214

Query: 184 --------GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                     +     ++  FS            M+V++  P L  +E+D +ID D V +
Sbjct: 215 EMPPELEKMMAHLDTLMTSRFSGGGSKSEDNTTSMTVKEALPRLEAEEADEIIDDDEVVK 274

Query: 236 DSIQMVENYGIVFLDEFDKIV-----ARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYG 289
            +++ V++ GIVFLDE DK+      AR  GNG      EGVQ++LL L EG +V+T+YG
Sbjct: 275 RALENVQHNGIVFLDEIDKLASAGDQARSGGNGASYRKGEGVQKELLALTEGCAVNTRYG 334

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIASGAFH S+P+DL+PE+QGR P+RV L  L  ++F  IL DTE NL+ Q 
Sbjct: 335 LVYTDHILFIASGAFHRSKPSDLMPELQGRLPIRVALSPLGAAEFEKILKDTEHNLLEQT 394

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             LM+TEG+ L FT+D+I  +A +A  +N+   +IGARRL T++ ++ E++SF A  +  
Sbjct: 395 SALMETEGVKLTFTDDAISEIASIAEQVNAQTDNIGARRLATIISKITEEVSFHAPKMNG 454

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            T  +D +YV+  + +    TD+  FIL
Sbjct: 455 MTFEVDRKYVQQRLSNVLERTDLSKFIL 482


>gi|257468124|ref|ZP_05632220.1| ATP-dependent protease ATP-binding subunit HslU [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062409|ref|ZP_07926894.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185]
 gi|313688085|gb|EFS24920.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185]
          Length = 438

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/439 (42%), Positives = 284/439 (64%), Gaps = 5/439 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGP 61
           +    +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+GP
Sbjct: 1   MNRGLTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRREITPKNIILIGP 60

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL  +    ++E + +E
Sbjct: 61  TGVGKTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNE 120

Query: 122 VREQASINAEERILDALVGKTA-TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +RE+A   A E+    +    +     +    + + +G+  D E++IE      D+   +
Sbjct: 121 LREEAYETALEKAAKLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIERTKRDLDLPIIE 180

Query: 181 IPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           +  G S     +  +  +VM   SG+ KK+  +V+     +M +E ++ +D+D+++ + I
Sbjct: 181 VVSG-SDDTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMMDEEVEKKLDLDSLNEEVI 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             VEN GI+F+DE DKI  RD      VSR+GVQRD+LP+VEGS+V TK+G + TDHILF
Sbjct: 240 DNVENNGIIFIDEIDKIAERDGVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILF 299

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IA+GAF  S P+DL+PE+QGRFP+RV LK+L K DF  ILT+ E NL+ QY  ++ T+ +
Sbjct: 300 IAAGAFTQSSPSDLMPELQGRFPIRVKLKNLEKEDFVKILTEVEYNLLDQYTAMLATDNV 359

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+ +I+ +AD+    N  V +IGARRL  V+E +L ++ + A   ++K V IDA +
Sbjct: 360 ELTFTKGAIEKIADITAAANEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANF 419

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+        E ++  +IL
Sbjct: 420 VKKVFKKENEEENLDKYIL 438


>gi|253583585|ref|ZP_04860783.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725]
 gi|251834157|gb|EES62720.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725]
          Length = 438

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/439 (41%), Positives = 286/439 (65%), Gaps = 5/439 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGP 61
           +    +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ +   +LR E+ PKNI+L+GP
Sbjct: 1   MNRGLTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRKEITPKNIILMGP 60

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL  +    ++E + +E
Sbjct: 61  TGVGKTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNE 120

Query: 122 VREQASINAEERILDALVGKTA-TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +RE+A   A E+    +    +     +    + + +G+  D E++IE      D+   +
Sbjct: 121 LREEAYETALEKAAKLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIEKTRKDLDLPIIE 180

Query: 181 IPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           +  G +     +  +  +VM   SG+ KK+  +V+     ++ +E ++ +D+D+++ + I
Sbjct: 181 VVSG-NDDTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMIDEEVEKKLDLDSLNEEVI 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           + VEN GI+F+DE DKI  RD      VSR+GVQRD+LP+VEGS+V TK+G + TDHILF
Sbjct: 240 ENVENNGIIFIDEIDKIAERDGVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILF 299

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IA+GAF  S P+DL+PE+QGRFP+RV LK+L + DF  ILTD E NL+ QY  ++ T+ +
Sbjct: 300 IAAGAFTQSSPSDLMPELQGRFPIRVKLKNLEREDFVKILTDVEYNLLDQYTAMLATDNV 359

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+ +I+ +AD+   +N  V +IGARRL  V+E +L ++ + A   ++K V IDA +
Sbjct: 360 ELSFTKGAIEKIADITAVMNEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANF 419

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V+        E ++  +IL
Sbjct: 420 VKKIFKKENEEENLDKYIL 438


>gi|148926638|ref|ZP_01810319.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845157|gb|EDK22252.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 403

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/408 (39%), Positives = 263/408 (64%), Gaps = 16/408 (3%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
            QL  +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE
Sbjct: 1   MQLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVE 60

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG----------KTATSNTREV 150
            ++RDL + A+N+V+  +R++ +++     E +IL+ L+           +    N+ E 
Sbjct: 61  SMVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEK 120

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            R KLR+G++ +  I+IE++        FD        +  + ++   +    +K K  M
Sbjct: 121 MRTKLRNGDLDESTIEIEISQN-----MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEM 175

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSRE 269
            ++     L  +  ++++D +++  ++++  EN GI+F+DE DKI  +  + N    S+E
Sbjct: 176 KIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKE 235

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLP+VEGS+V TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL
Sbjct: 236 GVQRDLLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSL 295

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +      ILT  +++L+ QY +L+KTE + L+F +++I  +A +A   N  + DIGARRL
Sbjct: 296 DDKALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRL 355

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TV+E++LED+SF A +   K  V+D + V   +GD     D+  +IL
Sbjct: 356 HTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403


>gi|159473805|ref|XP_001695024.1| ATP-dependent subunit of mitochondrial HslUV protease
           [Chlamydomonas reinhardtii]
 gi|158276403|gb|EDP02176.1| ATP-dependent subunit of mitochondrial HslUV protease
           [Chlamydomonas reinhardtii]
          Length = 460

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/460 (42%), Positives = 282/460 (61%), Gaps = 29/460 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            +P  IV+ LDR+I+GQ  AKRAVA+ALRNRWRRQ+  PA  RDE+MPKNIL+VGPTG G
Sbjct: 1   LTPAAIVAALDRHIVGQAAAKRAVAVALRNRWRRQRVEPAAFRDEIMPKNILMVGPTGCG 60

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++RRLA+LA APF+KVE TK+TE+GYVGR+VE+I+++LV+ A+ +VR   ++ +   
Sbjct: 61  KTEVARRLAKLADAPFVKVEATKYTELGYVGRDVEEIVKELVEAALVLVRSRAKERLAVA 120

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEI-----------------SDKEIDIE 168
           ++  AEE I+ ALVG  A ++  + FR+  R G                   S  E+   
Sbjct: 121 SAARAEEVIVRALVGPHAAADIVDSFREMYRRGGCGGRGGERRRRGSRERGVSKMELFAR 180

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                 D +     GG  +G +            G   K  + V +    L   E+++L+
Sbjct: 181 PGPPGGDRAGGGGGGGPGMGGMGGGFGPGGGGRGGSGYKKTLKVSEARSRLEEAEAEKLL 240

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVST 286
             + V R++++  E  GIVF+DE DKIV   SG     GVS EGVQRDLLP++EG +V T
Sbjct: 241 SSEAVTREALRAAEQDGIVFIDEIDKIVEPSSGRVVSGGVSSEGVQRDLLPIIEGCTVPT 300

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G ++T+H+LFI SGAFH ++P+D+L E+QGR P+RV L+ L  +DF  ILT+ ++N+I
Sbjct: 301 KHGPVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRVELQGLTAADFHRILTEPDNNMI 360

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS--- 403
            Q +EL+ TEG+ L FT+ ++ A A +A   N  + +IGARRL T++ERVL +ISF+   
Sbjct: 361 RQQQELLGTEGVRLTFTDGAVRAAASLAEQANRLLDNIGARRLHTILERVLAEISFTAPE 420

Query: 404 ------ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
                 A+ L     V+D   V   + D   + D+  ++L
Sbjct: 421 RAAEARAAGLDAFEYVVDEAMVHARLDDLLKKQDLSRYVL 460


>gi|118374823|ref|XP_001020599.1| heat shock protein HslVU, ATPase subunit HslU containing protein
           [Tetrahymena thermophila]
 gi|89302366|gb|EAS00354.1| heat shock protein HslVU, ATPase subunit HslU containing protein
           [Tetrahymena thermophila SB210]
          Length = 469

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/443 (39%), Positives = 276/443 (62%), Gaps = 7/443 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +K + + +P+E+V  L ++IIGQ+ AKRAVAIA RNRWRRQ L  DL+ E+ PKNIL+VG
Sbjct: 28  IKKSSSMTPKEVVEYLSQHIIGQEQAKRAVAIAYRNRWRRQFLEEDLKKEVCPKNILMVG 87

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I+RRLA+L+ APFIKVE TK+TE+GY G++VEQII+DLV  A+   + + + 
Sbjct: 88  PTGSGKTEIARRLAQLSDAPFIKVEATKYTEVGYHGKDVEQIIQDLVRTAVRNAKANHKK 147

Query: 121 EV---REQASINAEERILDA-LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            +   ++       ++I+DA L    +    R   R+ + +  + D+ I +E+     + 
Sbjct: 148 NIENAKQIIEQIVLDQIVDAFLGPNFSNEEVRNKKREDISNNLMDDRRITVELPHDYWER 207

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            N           L+  + F + +   +  + R++V+    +L +   + L       + 
Sbjct: 208 VNTKGSFQNIDEFLDYIKNFKQGLNP-KNDQQRLTVKGARSQLYQIYEEALEKSVNYEKI 266

Query: 237 SIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +I+ VE  GIVF+DE DKI        N    S +GVQRDLLPL+EG+ VSTK+G + TD
Sbjct: 267 AIRQVEEEGIVFIDEIDKIATSGEIQQNQKSPSADGVQRDLLPLIEGTVVSTKWGDVKTD 326

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           HILFI +GAF +S+P+DL+PE+ GR P+RV L+ L K++   IL   + N+I Q ++L+K
Sbjct: 327 HILFITAGAFSMSKPSDLIPELLGRLPIRVELQQLKKNELYSILKFPKYNMIFQQQQLLK 386

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            EG+ + FT++++  +A +A   N+++ DIGARRL  ++ER LE+ISF A  L++K +VI
Sbjct: 387 QEGLNIQFTDEAVKKIAILAEQANTSLEDIGARRLHELIERCLENISFDAPYLEQKDIVI 446

Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437
           D ++V   +  +  + D   F++
Sbjct: 447 DQQFVDKTLQKYMEKADYRKFLI 469


>gi|283953975|ref|ZP_06371504.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794580|gb|EFC33320.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 403

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/408 (40%), Positives = 262/408 (64%), Gaps = 16/408 (3%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
            QL  +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE
Sbjct: 1   MQLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVE 60

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG----------KTATSNTREV 150
            ++RDL + A+N+V+  +R++ +++     E +IL+ L+           +    N+ E 
Sbjct: 61  SMVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEK 120

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            R KLR+G++ +  I+IE++        FD        +  + ++   +    +K K  M
Sbjct: 121 MRTKLRNGDLDESIIEIEISQN-----MFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEM 175

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSRE 269
            ++     L  +  ++++D +++  ++++  EN GI+F+DE DKI     + N    S+E
Sbjct: 176 KIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVTSGNSNRQDPSKE 235

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
           GVQRDLLP+VEGSSV TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL
Sbjct: 236 GVQRDLLPIVEGSSVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSL 295

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +      ILT  +++L+ QY EL+KTE + LDF +++I  +A +A   N  + DIGARRL
Sbjct: 296 DDKALYEILTRPKNSLLKQYSELLKTENLELDFDDEAIKEIAKIASRANEEMQDIGARRL 355

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            TV+E++LED+SF A +   K  V+D + V   +GD     D+  +IL
Sbjct: 356 HTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403


>gi|302769446|ref|XP_002968142.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii]
 gi|300163786|gb|EFJ30396.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii]
          Length = 510

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/473 (39%), Positives = 279/473 (58%), Gaps = 62/473 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53
            +P ++V+ LDR+I+GQ  AKRAVA+AL              NRWRR ++P+  R+E++P
Sbjct: 58  LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI +
Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177

Query: 114 VRESRRDEVREQASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEID 166
            RE  R  + ++     E RILDAL+G T         +++ E  RK  + GEI ++++ 
Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++V +        ++ GG  + I +L     K + S + ++  ++V +    L   E ++
Sbjct: 238 LDVPEGGRVRVPIEVTGG-GLPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296

Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266
            +  D + +D+I                   Q  E+ GIVF+DE DKIV       G   
Sbjct: 297 HLQSDQIIKDAIRVHASVFDLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           S EGVQRDLLP++EGS                   GAFH  +P+D+L E+QGR P+RV L
Sbjct: 357 SAEGVQRDLLPIIEGS-------------------GAFHSCKPSDMLAELQGRLPIRVEL 397

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN--LNSTVGDI 384
           K L ++D   ILT+ E N+I Q + LM TE + L F++D+I  LA+VA    +N+++ +I
Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           GARRL TV+E+V+EDISF+A +   +   ID + VR  +G+   +TD+  F+L
Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVRDAVGELLKKTDLSKFVL 510


>gi|261335254|emb|CBH18248.1| heat shock protein HslVU, ATPase subunit, HslU putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 496

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/462 (40%), Positives = 269/462 (58%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64
           + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+  + LR +++PKNILLVGPTGV
Sbjct: 36  DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+A+L  APF+KVE TK+TE+G+ G++VE II DL   A    +     E  +
Sbjct: 96  GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155

Query: 125 QASINAEERIL-----------------------DALVGKTATSNTR-----EVFRKKLR 156
           +A   A E +                        D+   +   S++R     E F++K +
Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGPSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             +  D  + I+V       +  +    +   +     L       G K ++   V++  
Sbjct: 216 -TQFKDDMVVIDVTQQPKGNTKPNASINSVEMLSVGILLGLGSESRGVKTRVTKRVEEAL 274

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           P   ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GVQ+DLL
Sbjct: 275 PLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGVQQDLL 334

Query: 277 PLVEGSSVSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           PL+EGS+V+ K G  I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L + D R
Sbjct: 335 PLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALKEEDIR 394

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL TV+ER
Sbjct: 395 RILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLHTVVER 454

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 455 VMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496


>gi|74025438|ref|XP_829285.1| heat shock protein HslVU ATPase subunit [Trypanosoma brucei
           TREU927]
 gi|70834671|gb|EAN80173.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma brucei]
          Length = 496

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/462 (40%), Positives = 269/462 (58%), Gaps = 31/462 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64
           + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+  + LR +++PKNILLVGPTGV
Sbjct: 36  DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+A+L  APF+KVE TK+TE+G+ G++VE II DL   A    +     E  +
Sbjct: 96  GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155

Query: 125 QASINAEERIL-----------------------DALVGKTATSNTR-----EVFRKKLR 156
           +A   A E +                        D+   +   S++R     E F++K +
Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGSSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             +  D  + I+V       +  +    +   +     L       G K ++   V++  
Sbjct: 216 -TQFKDDMVVIDVTQQPKGNTKPNASINSVEMLSVGILLGLGSESRGVKTRVTKRVEEAL 274

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           P   ++   RL+D   +   +  + E  G+VF+DE DK+V   +     VS  GVQ+DLL
Sbjct: 275 PLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGVQQDLL 334

Query: 277 PLVEGSSVSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           PL+EGS+V+ K G  I+TD+ILFI SGAFH  + +D++ E+QGR PVRV + +L + D R
Sbjct: 335 PLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALKEEDIR 394

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            IL + + NL+LQ K LMKTE I L+FT D++D LA V   +N+   +IGARRL TV+ER
Sbjct: 395 RILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLHTVVER 454

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           V+++ SF+  D + K VVIDAE VR   G   +  D+  +IL
Sbjct: 455 VMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496


>gi|299135729|ref|ZP_07028913.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX8]
 gi|298601853|gb|EFI58007.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp.
           MP5ACTX8]
          Length = 535

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/518 (37%), Positives = 300/518 (57%), Gaps = 86/518 (16%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIV+ELD+Y++GQ  AKRAVAIALRNR RRQ+LP +L +E+MPKNIL++G TGVG
Sbjct: 18  EMTPREIVAELDKYVVGQAAAKRAVAIALRNRSRRQKLPPELAEEIMPKNILMIGSTGVG 77

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+L  +PF+K+E +KFTE+GYVGR+VE ++RDLV++ I++VRE + DE+ ++
Sbjct: 78  KTEIARRLAKLTNSPFLKIEASKFTEVGYVGRDVESMVRDLVEIGIDMVREEKLDEIEDR 137

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKL-------RDGEISDKEIDIEVADTSSDISN 178
           A + AE+R++D LV + + S         +        + ++  + I++ +  +      
Sbjct: 138 AELAAEDRLVDLLVQQGSPSTPAAETGPPVPRLVVATSEEQLPPEVIEMALHLSGQKPPV 197

Query: 179 FDIPGGASVGI----------LNLSELFSKVMGSGRKKKIRMSVQKC------------- 215
            +   GAS  +              +   +    GR     + ++               
Sbjct: 198 AEGAPGASPALAVVPKTDAERAREKDKLRQQFREGRLDDRMVEIETRDRNMPQIEFISNQ 257

Query: 216 ------------------------YPELMRDESDRLIDMDT--------VHRDSIQMVEN 243
                                    P  + +  D L+  +         V R +I+ VE+
Sbjct: 258 PPEDMESSGMKEMLSGMFGQRTRKRPMKVVEAFDYLVQEEEGRLLDMDQVTRLAIERVED 317

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            G+VFLDE DKI  R+ G+G  +SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GA
Sbjct: 318 SGMVFLDEIDKIAGREGGHGPDISREGVQRDILPIVEGTTVNTKYGMVATDHILFIAAGA 377

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FHVS+P+DL+PE+QGRFP+RV L+ L  +DF  ILT+  ++L+ Q   L++TEG+ L+F 
Sbjct: 378 FHVSKPSDLIPELQGRFPIRVELQPLTVADFLRILTEPRASLVKQATALLETEGLTLEFA 437

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT------------ 411
            ++++ +A+ A  +N T  +IGARRL T+ME+VL++ISF A DL + T            
Sbjct: 438 PEALEEMANFAFQVNETTENIGARRLHTIMEKVLDEISFQAPDLVKATEPVAGAKPVPTL 497

Query: 412 ------------VVIDAEYVRLHIGDFPSETDMYHFIL 437
                       + ++ EYV+  + D     D+  +IL
Sbjct: 498 LERTTDKGTQRVLRVEREYVQQQVADIVKNQDLSRYIL 535


>gi|281494437|ref|NP_980167.2| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           10987]
 gi|290782531|gb|AAS42775.2| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
           cereus ATCC 10987]
          Length = 393

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/395 (39%), Positives = 242/395 (61%), Gaps = 32/395 (8%)

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V+++A   A +
Sbjct: 1   MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 60

Query: 133 RILDALVGKTAT------------------------------SNTREVFRKKLRDGEISD 162
           R+++ JV                                      R+   +KL  G + D
Sbjct: 61  RLVEIJVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 120

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + + IEV +  S + +     G     +N  +     M   + KK ++SV++    L  +
Sbjct: 121 EIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFM-PKKTKKRKLSVKEARKVLTNE 179

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+VEGS
Sbjct: 180 EAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIVEGS 238

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL + +
Sbjct: 239 NVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPD 298

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LED+SF
Sbjct: 299 NALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSF 358

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            AS++  + + I  +YV   +       D+  FIL
Sbjct: 359 EASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 393


>gi|310778883|ref|YP_003967216.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter
           polytropus DSM 2926]
 gi|309748206|gb|ADO82868.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter
           polytropus DSM 2926]
          Length = 440

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 184/440 (41%), Positives = 294/440 (66%), Gaps = 5/440 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGP 61
           +    +PREIV +LD+YI+ Q +AK+ VAI+LRNR+RR+ +  +++R E+ PKNI+L+GP
Sbjct: 1   MEKKLTPREIVEQLDKYIVSQDEAKKNVAISLRNRYRRKAIEDSEMRKEITPKNIILMGP 60

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TGVGKT I+RRLA++A +PF+KVE TK+TE+GYVG++VE +I+DLV + I  ++  + + 
Sbjct: 61  TGVGKTEIARRLAKIADSPFLKVEATKYTEVGYVGKDVESMIKDLVGITIRKIKTEKIEN 120

Query: 122 VREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEIDIEVADTS--SDISN 178
           +RE+      E++   +    T   + +    ++++DG+ ++ E+++E +  S    +  
Sbjct: 121 LREKFMSQVLEKVAKLIKPYDTLNPDEKGKIIQEIKDGKHAEVEVELEKSKKSDSPVVEV 180

Query: 179 FDIPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           F        G+  + E + S     G+ KKI++ V+     +++DE ++ IDM+++  ++
Sbjct: 181 FSAGNSQDEGMQGIIENIMSSFPSGGKAKKIKLKVKDALEYILKDEIEKSIDMESLIPEA 240

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           ++M E  GI+F+DE DKI  R+  +   VSR+GVQRD+LP+VEG++V TKYG++ TDHIL
Sbjct: 241 VKMTEEDGIIFIDEIDKIAEREGASRGEVSRQGVQRDILPIVEGTTVMTKYGAVKTDHIL 300

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           F+A+GAF +S P+DL+PE+QGRFPV+V LKSL K DF  ILT  E NLI QYK L+ ++ 
Sbjct: 301 FVAAGAFTLSSPSDLMPELQGRFPVKVKLKSLEKEDFIKILTAVEYNLIQQYKLLLGSDD 360

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + +DFT  +ID +++VA+ LN +V +IGARRL  V+E VL+DI F A    +K + I   
Sbjct: 361 VEIDFTPGAIDRISEVAIELNESVENIGARRLAAVVETVLKDIMFEAPYEDKKKIKIGKR 420

Query: 418 YVRLHIGDFPSETDMYHFIL 437
            +         E ++ ++IL
Sbjct: 421 DIDKIFKSDAEEENLDNYIL 440


>gi|322817707|gb|EFZ25352.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 187/455 (41%), Positives = 272/455 (59%), Gaps = 29/455 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q    +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQPEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL   A    +          
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNAKTKAKRRLEAERAEE 160

Query: 117 -----------SRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDK 163
                      S     R        +   D   G  A  T  T E F+ K +  E  D 
Sbjct: 161 ALAMTLDVVYGSWVTRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYK-TEFKDD 219

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + +++  T    +      G S   ++++ LF        K ++   V++  P +++D 
Sbjct: 220 LVTVDIVPTPPKHNR----QGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDI 275

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS 
Sbjct: 276 LERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSD 335

Query: 284 VSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           V+ K G  I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + +
Sbjct: 336 VTLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPK 395

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF
Sbjct: 396 FNLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSF 455

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +  D ++K VVIDA  V+       +  D+  ++L
Sbjct: 456 NCQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|71657012|ref|XP_817038.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70882205|gb|EAN95187.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 186/455 (40%), Positives = 271/455 (59%), Gaps = 29/455 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q    +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL   A    +          
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNAKTKAKRRLEAERAEE 160

Query: 117 -----------SRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDK 163
                      S     R        +   D   G  A  T  T E F+ K +  E  D 
Sbjct: 161 ALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYK-TEFKDD 219

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + +++       +      G S   ++++ LF        K ++   V++  P +++D 
Sbjct: 220 LVTVDIVPPPPKHNR----QGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDI 275

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS 
Sbjct: 276 LERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSD 335

Query: 284 VSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           V+ K G  I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + +
Sbjct: 336 VTLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPK 395

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF
Sbjct: 396 FNLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSF 455

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +  D ++K VVIDA  V+       +  D+  ++L
Sbjct: 456 NCQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|322488928|emb|CBZ24177.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 503

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 191/471 (40%), Positives = 268/471 (56%), Gaps = 42/471 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGV 64
           N SPR I   LD YI+GQ   KRAVAIALRNRWRR+Q   ADLR E++PKN+LL+GPTGV
Sbjct: 36  NLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRREVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R +   E   
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 125 QASINAEE------------RILD--ALVGKTATSNT----------------------R 148
           +A   A +            R +D   L    A   T                       
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSAGKAEEVTAAAADDSAAEAEESQQQQQQHNF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-K 207
           E FR+   D  I++  + I+++   +       P   S+ + ++  L        R K  
Sbjct: 216 EYFREHYLDEPITNDMVTIDISAPQAPTKP---PKEGSIDLQSVGMLLGLGGEPKRLKVS 272

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
           +   V    P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S     VS
Sbjct: 273 VTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSANADVS 332

Query: 268 REGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
             GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PVRV L
Sbjct: 333 STGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPVRVEL 392

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           ++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS   +IGA
Sbjct: 393 QALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQGQNIGA 452

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++ERV++  SF+  + + K V I+A+ VR          ++  ++L
Sbjct: 453 RRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503


>gi|71659239|ref|XP_821343.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi
           strain CL Brener]
 gi|70886720|gb|EAN99492.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Trypanosoma cruzi]
          Length = 490

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 186/455 (40%), Positives = 270/455 (59%), Gaps = 29/455 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
            SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q    +LR +++PKNILLVGPTGVG
Sbjct: 41  LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116
           KT ISRR+A++  APF+KVE TK+TE+G+ G++V+ II DL   A    +          
Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNAKTKAKRRLEAERAEE 160

Query: 117 -----------SRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDK 163
                      S     R        +   D   G  A  T  T E F+ K +  E  D 
Sbjct: 161 ALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYK-TEFKDD 219

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            + +++       +      G S   ++++ LF        K ++   V++  P +++D 
Sbjct: 220 LVTVDIVPPPPKHNR----QGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDI 275

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            +RL+D   +   +  + E+ G+VF+DE DK+V   + N   VS  GVQ+DLLPL+EGS 
Sbjct: 276 LERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSD 335

Query: 284 VSTKYG-SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           V+ K G  I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL +  
Sbjct: 336 VTLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPR 395

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            NL+LQ KELMKTE + ++FTED++D LA V   +N+   +IGARRL TV+ERV++  SF
Sbjct: 396 FNLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSF 455

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +  D ++K VVIDA  V+       +  D+  ++L
Sbjct: 456 NCQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490


>gi|146078307|ref|XP_001463511.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania
           infantum JPCM5]
 gi|25956190|emb|CAD19161.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|25956192|emb|CAD21590.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|25956194|emb|CAD21591.1| regulatory subunit of the HslVU complex [Leishmania infantum]
 gi|134067597|emb|CAM65876.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           infantum JPCM5]
 gi|322496930|emb|CBZ32000.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 503

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 186/471 (39%), Positives = 264/471 (56%), Gaps = 42/471 (8%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+Q   ADLR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R +   E   
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 125 QASINAEE------------RILD------------------------ALVGKTATSNTR 148
           +A   A +            R +D                                 +  
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQPQQQQHNF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-K 207
           E FR+   D  I++  + I++    +       P    + + ++  L        R K  
Sbjct: 216 EYFREHYLDEPITNDMVTIDINAPQAPTKP---PKEGGIDLQSVGMLLGLGGEPKRLKVS 272

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
           +   V    P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S     VS
Sbjct: 273 VTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSANADVS 332

Query: 268 REGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
             GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PVRV L
Sbjct: 333 STGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPVRVEL 392

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           ++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS   +IGA
Sbjct: 393 QALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQGQNIGA 452

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           RRL T++ERV++  SF+  + + K V I+A+ VR          ++  ++L
Sbjct: 453 RRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503


>gi|154332754|ref|XP_001562639.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134059642|emb|CAM41762.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 503

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 184/474 (38%), Positives = 269/474 (56%), Gaps = 48/474 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+Q   A+LR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDAELRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R +   E   
Sbjct: 96  GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 125 QASINAEERILDA------------------------------------LVGKTATSNTR 148
           +A   A + +  A                                       +    +T 
Sbjct: 156 EALNMALDTVYSAWSVSQRMRGMDRSLLGAGKAEEGTSAAADDSASESEESPQQPQPHTF 215

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           E FR+  ++  I D  + I++    +      +      G ++L  +   +   G  K++
Sbjct: 216 EYFREHYQEEPIKDDMVTIDITAPQA------VTKPPKEGGIDLQSVGMLLGLGGEPKRL 269

Query: 209 RM----SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           ++     V    P   ++  D+LID  +V+  +  + E  G++F+DE DK+VA  S    
Sbjct: 270 KVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVIFVDEIDKVVAEPSSANA 329

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
            VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PVR
Sbjct: 330 DVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPVR 389

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V L++L ++DFR ILT+ + NL+ Q +E+MKTE I + FTED ++ LA V   +N+   +
Sbjct: 390 VELQALTENDFRRILTEPKFNLLRQQEEMMKTEKIEVVFTEDGVNELAKVTCAVNAQGQN 449

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           IGARRL T++ERV++  SF+  D + K V I+A+ V           ++  ++L
Sbjct: 450 IGARRLNTILERVMDPYSFNCEDYEGKKVEINAKVVHEATERLQKNVNLAKYLL 503


>gi|302773914|ref|XP_002970374.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii]
 gi|300161890|gb|EFJ28504.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii]
          Length = 521

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 182/458 (39%), Positives = 269/458 (58%), Gaps = 62/458 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53
            +P ++V+ LDR+I+GQ  AKRAVA+AL              NRWRR ++P+  R+E++P
Sbjct: 58  LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI +
Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177

Query: 114 VRESRRDEVREQASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEID 166
            RE  R  + ++     E RILDAL+G T         +++ E  RK  + GEI ++++ 
Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++V +        ++ GG  + I +L     K + S + ++  ++V +    L   E ++
Sbjct: 238 LDVPEGGRVRVPIEVTGG-GLPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296

Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266
            +  D + +D+I                   Q  E+ GIVF+DE DKIV       G   
Sbjct: 297 HLQSDQIIKDAIRVHASVFGLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326
           S EGVQRDLLP++EGS                   GAFH  +P+D+L E+QGR P+RV L
Sbjct: 357 SAEGVQRDLLPIIEGS-------------------GAFHSCKPSDMLAELQGRLPIRVEL 397

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN--LNSTVGDI 384
           K L ++D   ILT+ E N+I Q + LM TE + L F++D+I  LA+VA    +N+++ +I
Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           GARRL TV+E+V+EDISF+A +   +   ID + V  H
Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVTGH 495


>gi|209882757|ref|XP_002142814.1| heat shock protein HslVU, ATPase subunit HslU [Cryptosporidium
           muris RN66]
 gi|209558420|gb|EEA08465.1| heat shock protein HslVU, ATPase subunit HslU, putative
           [Cryptosporidium muris RN66]
          Length = 608

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 175/479 (36%), Positives = 273/479 (56%), Gaps = 49/479 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           SP +IV  LD YIIGQ  AKRAVA AL NR RR+++    LR  ++PKNILL+GPTGVGK
Sbjct: 130 SPSDIVQYLDEYIIGQTKAKRAVANALINRLRRKKIKDVSLRSSIIPKNILLIGPTGVGK 189

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRL++   APFIKVE T+FTE+G+ G++V+ II+DL ++++   +   + E+RE  
Sbjct: 190 TEIARRLSQFVDAPFIKVEATRFTEVGFHGKDVDNIIKDLAEISLKRQKLKLQSEMREFV 249

Query: 127 SINAEERILDALVGKTAT------SNTREVFRKKLRDGEISDKEIDI------------- 167
               E+++L+A++   +       +N    + + +R G ++DK IDI             
Sbjct: 250 EKIVEKKLLEAILISLSISPSSISTNEWFFWLQHIRHGYLNDKVIDICIPDGLHLNKYKS 309

Query: 168 -----EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK--------------- 207
                E +  ++ I NF+          N  +  S +  +    +               
Sbjct: 310 ICNLNEYSKDNNGIFNFNFSDDVYNIDSNNIDEKSSITTNYFTNRHSGNLKYSNNSVENQ 369

Query: 208 ----IRMSVQKCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
               I+++V +    L+++E + ++  D + + + +I+  E  GIVF+DE DKI  + + 
Sbjct: 370 VSNHIKVTVAEARSILIQNEINSILLQDSEFLMKRAIESTEQEGIVFIDEIDKICIKRNS 429

Query: 262 --NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
             NG   S EGVQRDLL L+EG+ V+TK G + TD ILFIASGAFH  + +D++ E+QGR
Sbjct: 430 HFNGPDASSEGVQRDLLSLIEGTVVATKIGDVKTDDILFIASGAFHNVKSSDMIAELQGR 489

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            P++  L++L  +D+  IL + + +L+ QY  L+  E I L FT+DSI+ +A +A  LNS
Sbjct: 490 LPIKAELEALVYTDYIRILKEPKYSLLKQYSALLDAENIYLTFTDDSIEEMARIAFELNS 549

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437
              +IGARRL  ++E V EDI+F+    Q  +++ ID  YV   +       D+  +IL
Sbjct: 550 YTENIGARRLHMIVEAVTEDITFNTDKYQLNSIIFIDKSYVINQLNSLILRYDLQKYIL 608


>gi|325115186|emb|CBZ50742.1| putative ATP-dependent protease ATP-binding subunit [Neospora
           caninum Liverpool]
          Length = 670

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 165/511 (32%), Positives = 256/511 (50%), Gaps = 78/511 (15%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTG 63
           F   P EIV+ LD+YI+GQ  AK+++AIALR+RWRRQQ     LR E+ P N+LL+GP+G
Sbjct: 160 FTKDPDEIVAALDKYIVGQDAAKKSLAIALRDRWRRQQVKDEKLRQEIAPNNLLLIGPSG 219

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++RLA  AGAPF+KV  T+FTE+G+VG +   I+  L   A    +E  +  ++
Sbjct: 220 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYADEKERMKKVIQ 279

Query: 124 EQASINAE----------------ERILDALVGKTATSNTREVFRKKLRDGEISDKE--- 164
            +A+  A                 + +++A++ +    + +    + L        +   
Sbjct: 280 GEAANRARQEVARALREQGAMNDSKEVIEAMIKEGRLDDVQVEIDETLLQRHPEGPQDPL 339

Query: 165 -------------------------IDIEVADTSSDISNFDIP--------------GGA 185
                                    +   V   +  +    +P              GGA
Sbjct: 340 SALFSSLGKAMNSQRGNPFTPVGIGVPGSVPPDAFGLPTSPVPFVPPAGGRSSRWNRGGA 399

Query: 186 SVGI---LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-------------ID 229
             G+   L L             +K +++V++    +    ++ +              D
Sbjct: 400 IPGVSFSLPLGIFGGNSQKGETPQKKKVTVKQAMAAITEHFANEMKTSRAPPCVGSAQTD 459

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE---GVQRDLLPLVEGSSVST 286
            + V   +    EN GIVF+DEFDK+V   SG+     R    GVQR+LL L+EG+SV T
Sbjct: 460 TEAVQERARDAAENRGIVFIDEFDKLVEERSGSDSSAFRSKRVGVQRELLTLIEGTSVQT 519

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           + G +NTDH+LFIASG+F   +P+D++PE+QGR P+R  LK L + +F  ILT+TE NL+
Sbjct: 520 QIGVVNTDHVLFIASGSFLAGKPSDIIPELQGRLPIRCDLKPLTEENFVQILTETEYNLL 579

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q   L+ TEG+ L F E  I  +A ++ +LN+   ++GARRL+TV+ +VLE   F A  
Sbjct: 580 DQQTALLATEGVKLTFEESGIREIARISHHLNTMNANVGARRLKTVLAKVLEQTKFEAHK 639

Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            Q   V +  E VR  +     + D+  +IL
Sbjct: 640 RQGSEVFVTKEMVRERLQPLMEQADLCKYIL 670


>gi|294874673|ref|XP_002767043.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative
            [Perkinsus marinus ATCC 50983]
 gi|239868471|gb|EEQ99760.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative
            [Perkinsus marinus ATCC 50983]
          Length = 1405

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 169/464 (36%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 9    PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
            P+++V  LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GKT
Sbjct: 942  PKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGCGKT 1001

Query: 68   AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
             I+RRLA + GAP +KV  TK+TE+G++G + + +I +L D + ++ R+    EV+ +A 
Sbjct: 1002 EIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEAR 1061

Query: 128  INAEERILDA-LVGKTATSNTREVFRKKL---RDGEISDKEIDIEVADTSSDISNFDIPG 183
              A E +  + L     T        K L    D    D EI+IE   T     +   PG
Sbjct: 1062 QLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKEDPRTMDTEIEIESHLTHPAPIDPSRPG 1121

Query: 184  G---ASVGILNLSELFSKVMGSGRKKKI----------------------RMSVQKCYPE 218
            G      G     +  S    SGR                          +++V+     
Sbjct: 1122 GIFDGGEGSRGRKDQASPSPVSGRDVADGRHLYKPGTNRMHNAEEALRWSKLTVRDAMSL 1181

Query: 219  LMRDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRD 274
            +    +  LI      +   +    E  G+VF+DEFDK+++  R++ +G G  R GVQ++
Sbjct: 1182 VTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGVQKE 1241

Query: 275  LLPLVEGSSVSTK-YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
            LL L+EG+ V+T   G I+T+HILFI +GAF  S+PA ++PE+QGR P+R  LK L   D
Sbjct: 1242 LLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLTTED 1301

Query: 334  FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
            F  ILT     L +Q + L+K EG+ + F  +++  +A  A  LN +  + GARRLQ+VM
Sbjct: 1302 FYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQSVM 1361

Query: 394  ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              +LE+I F A       V ID + V+  +    +E+D+  +++
Sbjct: 1362 STLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTESDLSKYVI 1405


>gi|25814819|gb|AAN75636.1|AF270500_2 HslU [Leptospira borgpetersenii]
          Length = 391

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 172/382 (45%), Positives = 254/382 (66%), Gaps = 29/382 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L  ++R+E+ PKNI+++GPTGVG
Sbjct: 7   ELTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL  +++N+V++  R +V E 
Sbjct: 67  KTEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEET 126

Query: 126 ASINAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEI 160
           A   AEE +LD L+     +                          TRE  RKKL+ G++
Sbjct: 127 AKQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKL 186

Query: 161 SDKEIDIEVADTSS---DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            D+E+++++ + S     +      G        L  +   +    + KK ++ + +   
Sbjct: 187 DDQEVELDLPNPSVSQIPMLQVFGAGNLDDLDNQLQNVLGDL-LPKKNKKRKLKIPEAIK 245

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
            L   E+D+L+D D V R++++ VE  GI+FLDE DKI  R+  NG  VSREGVQRDLLP
Sbjct: 246 TLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLLP 305

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           +VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF  I
Sbjct: 306 IVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEKI 365

Query: 338 LTDTESNLILQYKELMKTEGII 359
           LT   S+L  QY+ L+ T+GI 
Sbjct: 366 LTAPRSSLARQYEALLFTDGIQ 387


>gi|294877694|ref|XP_002768080.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Perkinsus marinus ATCC 50983]
 gi|239870277|gb|EER00798.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative
           [Perkinsus marinus ATCC 50983]
          Length = 567

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 168/464 (36%), Positives = 252/464 (54%), Gaps = 35/464 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P+++V  LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GKT
Sbjct: 104 PKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGSGKT 163

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA + GAP +KV  TK+TE+G++G + + +I +L D + ++ R+    EV+ +A 
Sbjct: 164 EIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEAR 223

Query: 128 INAEERILDA-LVGKTATSNTREVFRKKL---RDGEISDKEIDIEVADTSSDISNFDIPG 183
             A E +  + L     T        K L    D    D EI+IE   T     +   PG
Sbjct: 224 QLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKEDPRTMDTEIEIESHLTHPAPIDPSRPG 283

Query: 184 G---ASVGILNLSELFSKVMGSGRKKKI----------------------RMSVQKCYPE 218
           G      G     +  S    SGR                          +++V+     
Sbjct: 284 GIFDGGEGSRGRKDQASPSPVSGRDVADGRQLYKPGTNRLHNAEEALRWSKLAVRDAMSL 343

Query: 219 LMRDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRD 274
           +    +  LI      +   +    E  G+VF+DEFDK+++  R++ +G G  R GVQ++
Sbjct: 344 VTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGVQKE 403

Query: 275 LLPLVEGSSVSTK-YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           LL L+EG+ V+T   G I+T+HILFI +GAF  S+PA ++PE+QGR P+R  LK L   D
Sbjct: 404 LLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLTTED 463

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT     L +Q + L+K EG+ + F  +++  +A  A  LN +  + GARRLQ+VM
Sbjct: 464 FYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQSVM 523

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +LE+I F A       V ID + V+  +    +++D+  +++
Sbjct: 524 STLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTKSDLSKYVI 567


>gi|157864974|ref|XP_001681195.1| ATP-dependent hsl protease ATP-binding subunit hslU; heat shock
           protein HslVU, ATPase subunit HslU
 gi|68124490|emb|CAJ02387.1| putative ATP-dependent hsl protease ATP-binding subunit hslU
           [Leishmania major strain Friedlin]
          Length = 504

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 270/475 (56%), Gaps = 49/475 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGV 64
           + SPR I   LD YI+GQ   KRAVAIALRNRWRR+QL  ADLR E++PKN+LL+GPTGV
Sbjct: 36  DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLRDADLRKEVVPKNMLLIGPTGV 95

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRR+AR+  APFIKVE TK+TE+G+ G++VE II DL   A    R +   E   
Sbjct: 96  GKTEISRRMARITNAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155

Query: 125 QASINAEE------------RILD--ALVGKTATSNT----------------------- 147
           +A   A +            R +D   L    A   T                       
Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQQQQQQQHN 215

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
            E FR+   D  I++  + I++    +          A  G ++L  +   +   G  K+
Sbjct: 216 FEYFREHYLDEPITNDMVTIDINAPQAPTKP------AKEGGIDLQSVGMLLGLGGEPKR 269

Query: 208 IRM----SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           +++     V    P   ++  D+LID  +V+  +  + E  G+VF+DE DK+VA  S   
Sbjct: 270 LKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSAN 329

Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
             VS  GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PV
Sbjct: 330 ADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPV 389

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V   +NS   
Sbjct: 390 RVELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQGQ 449

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T++ERV++  S +  + + K V I+AE VR          ++  ++L
Sbjct: 450 NIGARRLNTILERVMDPYSCNCEEYEGKRVEINAEMVREATEKLQKNVNLAKYLL 504


>gi|1359912|emb|CAA59020.1| heat shock induced protein HtpO [Lactobacillus leichmannii]
          Length = 391

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 162/390 (41%), Positives = 237/390 (60%), Gaps = 38/390 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT
Sbjct: 5   TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA +  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV +    +V  QA 
Sbjct: 65  EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124

Query: 128 INAEERILDALVG----------------------------------KTATSNTREVFRK 153
             A + ++  LV                                        N R    +
Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           KL  G + ++E+ IEV          D+        +++S +   ++   + K   + V 
Sbjct: 185 KLDRGLLENEEVTIEVEQAPKANPMGDM---MGQMGMDMSSMLGDMLPKKKVK-RTLPVS 240

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
           +    L+++E  +L++ D +++ ++      GI+F+DE DKI A D  N  GVSREGVQR
Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
           D+LP+VEGS+VSTKYG ++TDHILFIA+GAF  S+P+DL+PE+QGRFP+RV L +L K D
Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFT 363
           F  IL D +++L+ QY  L+K +G+ L F 
Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVFH 390


>gi|237843861|ref|XP_002371228.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|211968892|gb|EEB04088.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|221483823|gb|EEE22135.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii GT1]
          Length = 565

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 169/497 (34%), Positives = 251/497 (50%), Gaps = 64/497 (12%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTG 63
           F   P EIV+ LD+YI+GQ  AK+++AIALR+RWRRQQ     LR E+ P N+LL+GP+G
Sbjct: 69  FTKDPDEIVAALDKYIVGQDTAKKSLAIALRDRWRRQQVKDEKLRREIAPNNLLLIGPSG 128

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES------ 117
            GKT +++RLA  AGAPF+KV  T+FTE+G+VG +   I+  L   A    +E       
Sbjct: 129 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYTDEKERVKKLIH 188

Query: 118 ------RRDEV----REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
                  R EV    R Q ++N  E ++ A++      +      + L        +  +
Sbjct: 189 GEAAGRARQEVARALRAQGAVNDSEDVIAAMIKDGRLDDVEVEIDENLLQRHPEGPQDPL 248

Query: 168 EVADTSSDISNFDIPGGA--------------SVGILNLSELFSKVMGSGRKK------- 206
               +S   +     GG                   L  + +       GR K       
Sbjct: 249 SALFSSLGKAMNSQRGGPLAPVGVGVPGPVSPEAFGLPAAPVPFVPPAGGRNKWNRGGAI 308

Query: 207 -----------------------KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                  K +++V++    +    ++ + D +TV   +    EN
Sbjct: 309 PGLSFSLPIGIFGGGGQKGEVPQKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAEN 368

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSRE---GVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
            GIVF+DEFDK+V   SG+     R    GVQR+LL L+EG+SV T+ G INTDH+LFIA
Sbjct: 369 RGIVFIDEFDKLVEERSGSDSSAFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIA 428

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           SG+F   +P+D++PE+QGR P+R  LK L + +F  ILT+TE NL+ Q   L+ TEG+ L
Sbjct: 429 SGSFLACKPSDIIPELQGRLPIRCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKL 488

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F E  +  +A  + +LN+   ++GARRL+TV+ +VLE   F A   Q   V +  E V 
Sbjct: 489 IFEESGVREIARTSHHLNTMNANVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVE 548

Query: 421 LHIGDFPSETDMYHFIL 437
             +     + D+  +IL
Sbjct: 549 ERLRPLMEQADLCKYIL 565


>gi|301632118|ref|XP_002945138.1| PREDICTED: ATP-dependent hsl protease ATP-binding subunit hslU-like
           [Xenopus (Silurana) tropicalis]
          Length = 490

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 138/297 (46%), Positives = 197/297 (66%), Gaps = 2/297 (0%)

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
             A S  R+VFRKKLR+G++ DKEI+I++A+    +     P G       L  +FS+ M
Sbjct: 196 PAADSTARQVFRKKLREGQLDDKEIEIDLAEARPQLEIM-GPAGMEEMAEQLRGMFSQ-M 253

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
           G  R+K  ++ +      L  + + +L++ D +   ++   E  GIVF+DE DK+ AR  
Sbjct: 254 GQERRKTRKLKIADALKLLTEEAAAKLVNEDEIKTRALANAEQNGIVFIDEIDKVAARQE 313

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            +G  VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIASGAFH+++P+DL+PE+QGRF
Sbjct: 314 TSGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRF 373

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L SL+  DF  ILT T ++L+ QY+ L+ TEG+ L+FT + I  LA +A  +N  
Sbjct: 374 PIRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALEFTPEGITRLAHIAFEVNER 433

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL TVMER+L+++SF A++   +TVVIDA YV   +     + D+  FIL
Sbjct: 434 TENIGARRLSTVMERLLDEVSFDAANRAGQTVVIDAAYVNERLQSLSQDEDLSRFIL 490


>gi|290977973|ref|XP_002671711.1| predicted protein [Naegleria gruberi]
 gi|284085282|gb|EFC38967.1| predicted protein [Naegleria gruberi]
          Length = 634

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 164/474 (34%), Positives = 258/474 (54%), Gaps = 67/474 (14%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-----ELMPKNIL 57
             +P+EIV+ LD++I+GQ+DAK+AV++ALRNR+RR          +      E++PKNIL
Sbjct: 163 KLTPQEIVNCLDKHIVGQKDAKKAVSVALRNRYRRKILIDWAKSEKTLLDPSEIIPKNIL 222

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR-- 115
           ++G TG GKT I+RRLA+L  APF+KVE TK+TE+GY GR+V+ I RDLVDV+IN++R  
Sbjct: 223 MIGSTGCGKTEIARRLAKLVSAPFLKVEATKYTELGYHGRDVDTIARDLVDVSINVLRNN 282

Query: 116 ------------------ESRRDEVRE------QASINAEERILDALVGKTATSNTRE-- 149
                             E     + E            E RI+  ++G    +N R   
Sbjct: 283 ITDLFKQFLNRPPSSTPSEQEEGTLEEPDLFGSYLQQLIEYRIIHLMIGTKNIANLRNGT 342

Query: 150 --VFRKKLRDGEISDKEIDIEVADTSSDIS------------------------NFDIPG 183
              +   LR+GE+ D++I++ + +  S +                         +     
Sbjct: 343 IKDYLNMLRNGELDDRKIEVSMPEKKSSLGLSQFSDVFDAVKGSFGSSLDNSKFSMPDVA 402

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             S     L  +  + +   + KK+ M++++    L+  E D+ ++      ++ ++ E+
Sbjct: 403 NLSDHQTPLDSMLGQ-LNPQKYKKVEMTIKEAKVRLVELEMDKFLNSPLFIEEARKIAES 461

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            GIVF+DE DKI        +    S EGVQRDLLPL+EG +++TKYG + TDH+LFIAS
Sbjct: 462 DGIVFIDEIDKICGSPEKKAVQGDASGEGVQRDLLPLLEGCTINTKYGPVKTDHVLFIAS 521

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSL-NKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           GAFH  +P+DL+ E QGR PVR+ L +L    +   +LT  E NL+ Q   LM +EGI L
Sbjct: 522 GAFHQQKPSDLMSEFQGRLPVRIMLTALNTPEELYQVLTMPEFNLVRQNISLMNSEGISL 581

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
            F++ +   +A+ +   N+   ++GARRL  ++E+V+++I   A +   K + I
Sbjct: 582 VFSDAANREIANFSALCNAGNDNLGARRLIGIIEKVIDEIRRCAKE-TGKELTI 634


>gi|213027519|ref|ZP_03341966.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 278

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 126/279 (45%), Positives = 189/279 (67%), Gaps = 2/279 (0%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           ++ DKEI+I +A     +     PG   +    L  +F   +G  ++K  ++ ++     
Sbjct: 2   QLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKL 59

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPL
Sbjct: 60  LVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPL 119

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEG +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L  SDF  IL
Sbjct: 120 VEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERIL 179

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  +++ +QYK LM TEG+ ++FT+  I  +A+ A  +N T  +IGARRL TV+ER++E
Sbjct: 180 TEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLME 239

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IS++ASDL  + + IDAEYV  H+    ++ D+  FIL
Sbjct: 240 EISYNASDLHGQNITIDAEYVSKHLDALVADEDLSRFIL 278


>gi|23010578|ref|ZP_00051218.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 296

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 183/295 (62%), Positives = 232/295 (78%), Gaps = 3/295 (1%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL   LRDE+ PKNIL++GPTG 
Sbjct: 2   TTFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLTGPLRDEVAPKNILMIGPTGC 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R  V+ 
Sbjct: 62  GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKA 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183
           +A   AE RILDALVG TA+  TRE FRKKLR+ E+ DKE++IE+A +    +  F+IPG
Sbjct: 122 KAEAAAEARILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPG 181

Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             GAS+G +NLS++  K +G  R K  R++V   Y  L+ +ESD+L+D D + R++I+ V
Sbjct: 182 MPGASMGAINLSDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREV 241

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           E+ GIVFLDE DKI AR+  +G  VSREGVQRDLLPL+EG++V+TK+G + TDHI
Sbjct: 242 EDNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHI 296


>gi|315158155|gb|EFU02172.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis
           TX0312]
          Length = 367

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 209/370 (56%), Gaps = 37/370 (10%)

Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNT-------------- 147
           ++RDLV+ AI IV + +   V  QA   A +R++  LV                      
Sbjct: 1   MVRDLVENAIQIVEKQQYSRVYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMF 60

Query: 148 --------------------REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                               R+   ++L  G + ++E+ IE+ +    +   +   G   
Sbjct: 61  NMAQQQQEAQEEVTEDIRTNRQTILEQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQ 118

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
             ++L+E     +   +K +  ++V++    L+++ES ++++   +H ++I++ E+ GI+
Sbjct: 119 MGIDLNETLG-ALSPKKKIERTVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGII 177

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F+DE DKI ++   N   VSREGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S
Sbjct: 178 FIDEIDKITSKSQQNSGEVSREGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLS 237

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +P+DL+PE+QGRFP+RV L  L   DF  ILT+  + LI QY  L+ TE + + FT+++I
Sbjct: 238 KPSDLIPELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAI 297

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           + LA +A ++N    +IGARRL T++ER+LED+ + A D+Q   + I   YV   + D  
Sbjct: 298 ERLAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIV 357

Query: 428 SETDMYHFIL 437
              D+  +IL
Sbjct: 358 QNEDLSRYIL 367


>gi|218288290|ref|ZP_03492589.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241649|gb|EED08822.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 260

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/262 (46%), Positives = 182/262 (69%), Gaps = 2/262 (0%)

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           ++   IPG  +  + NL E+   ++     KK +M+V++    L ++E+ +LIDMD V  
Sbjct: 1   MALGFIPGMGAESLGNLQEMLGNLLPKS-TKKRKMTVREARKVLTQEEAQKLIDMDAVTA 59

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++I   EN+GI+F+DE DKI  R   +G  VSREGVQRD+LP+VEGS+VSTKYG++ TD+
Sbjct: 60  EAIYRAENHGIIFIDEMDKIAGR-ETHGPDVSREGVQRDILPIVEGSTVSTKYGAVKTDY 118

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFI +GAFHV++P+DL+PE+QGRFP+RV L+ L K DF  IL + E++LI QY  L++T
Sbjct: 119 MLFIGAGAFHVAKPSDLIPELQGRFPIRVELEPLTKDDFVRILREPENSLIKQYTALLET 178

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EGI ++FT+++I+ +A++A  +N    +IGARRL T++E+VLED+SF A ++    + I 
Sbjct: 179 EGIRVEFTDEAIERIAEMAQKVNEETENIGARRLHTLVEKVLEDLSFEAPEIHLGEIKIT 238

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   +GD     D+  FIL
Sbjct: 239 RAYVDEKLGDIVQNRDLSQFIL 260


>gi|38046581|gb|AAR09151.1| ATP-dependent hslVU protease [Mannheimia glucosida]
          Length = 301

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 136/297 (45%), Positives = 200/297 (67%), Gaps = 3/297 (1%)

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
           ++  ++TR+ FRKKLR+G++ DKEI+I+VA   S       P G       L  LF   M
Sbjct: 8   ESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG-M 64

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
              + KK +M ++     ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI  +  
Sbjct: 65  SPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGE 124

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QGR 
Sbjct: 125 HSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRL 184

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A+ A  +N  
Sbjct: 185 PIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVNEK 244

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D+  FIL
Sbjct: 245 TENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLRRFIL 301


>gi|257457891|ref|ZP_05623050.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema
           vincentii ATCC 35580]
 gi|257444604|gb|EEV19688.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema
           vincentii ATCC 35580]
          Length = 296

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 135/295 (45%), Positives = 201/295 (68%), Gaps = 2/295 (0%)

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSG 203
           S TRE FRK LRDG+  D+ +++ V  +       F            +S + S +MG+G
Sbjct: 2   SGTREKFRKMLRDGKFEDRMVEVSVQQSGMPSFEIFAGGSNMEDLESAMSNISSMLMGAG 61

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN- 262
           R K+   SV++    +M D+ D+L+D D +  ++ + VE  GI+F+DE DK+ ++   + 
Sbjct: 62  RNKRKTTSVKEARTIIMDDQLDKLVDHDKIVEEAKERVEQMGIIFIDEIDKVASKSERSS 121

Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
           GI VSREGVQRD+LP+VEGS V+TK+G I+T HILFIA+GAF +S+P+DL+PE QGRFP+
Sbjct: 122 GIDVSREGVQRDILPIVEGSKVNTKFGVIDTRHILFIAAGAFSISKPSDLIPEFQGRFPL 181

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
           RV L+SL+  DF+ IL + ++ L  QYK L++TEG+ + FT+D+ID ++++A  +NST+ 
Sbjct: 182 RVELESLHAGDFKRILLEPKNALTKQYKALLETEGVTVVFTDDAIDRMSNLAAEVNSTME 241

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +IGARRL T+ME +LEDISF+AS++ EK V ID  YV   + D   + D+  +IL
Sbjct: 242 NIGARRLHTIMEMLLEDISFNASNMTEKNVEIDRAYVDERLKDIVQDQDLSRYIL 296


>gi|2105144|gb|AAB57895.1| GufA [Treponema denticola]
          Length = 382

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 143/382 (37%), Positives = 228/382 (59%), Gaps = 47/382 (12%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT------------------ 144
           IRDL+ V   +V+   +++++EQA  N EE +LD L+  +                    
Sbjct: 1   IRDLMAVGYTMVKSEMQEKLKEQAEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASS 60

Query: 145 --------------------------SNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                                     S TRE FR  LR+ ++ DK +++ ++ +    + 
Sbjct: 61  GTTISLPSVSSTAQAEEHKAQNENDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTF 120

Query: 179 FDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               GG+++  +   +S + S +MG  + K+  +SV++    +M ++ DR++D D V  +
Sbjct: 121 EFFAGGSNMEDIESAMSNISSMLMGGRKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDE 180

Query: 237 SIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           + Q VE  GI+F+DE DK+ +R   G G  VSREGVQRD+LP+VEGS VSTKYG ++T H
Sbjct: 181 AKQRVEQMGIIFIDEIDKVASRSDRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRH 240

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIA+G F VS+P++L+PE QGRFP+RV L++L+  DF+ IL + ++ L  QY EL++T
Sbjct: 241 ILFIAAGRFSVSKPSNLIPEFQGRFPLRVELEALHAEDFKRILLEPKNALTKQYAELLET 300

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ ++F +++ID ++ +A ++NS   +IGARRL T+ME +LEDISF+AS++  +TV ID
Sbjct: 301 EGVKIEFLDEAIDRMSFLAADVNSKNENIGARRLHTIMEMLLEDISFNASEMGGETVKID 360

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
             YV   + D   + D+  +IL
Sbjct: 361 VAYVDERLKDIVQDQDLSRYIL 382


>gi|257089962|ref|ZP_05584323.1| heat shock protein hslU [Enterococcus faecalis CH188]
 gi|256998774|gb|EEU85294.1| heat shock protein hslU [Enterococcus faecalis CH188]
          Length = 283

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/285 (40%), Positives = 184/285 (64%), Gaps = 3/285 (1%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           ++L  G + ++E+ IE+ +    +   +   G     ++L+E     +   +K +  ++V
Sbjct: 2   EQLEKGLLDNREVTIEIEEPKKTMPAMN--NGLEQMGIDLNETLG-ALSPKKKIERTVTV 58

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           ++    L+++ES ++++   +H ++I++ E+ GI+F+DE DKI ++   N   VSREGVQ
Sbjct: 59  KEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREGVQ 118

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
           RD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L  L   
Sbjct: 119 RDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTAD 178

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  ILT+  + LI QY  L+ TE + + FT+++I+ LA +A ++N    +IGARRL T+
Sbjct: 179 DFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLHTI 238

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +ER+LED+ + A D+Q   + I   YV   + D     D+  +IL
Sbjct: 239 LERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 283


>gi|196017997|ref|XP_002118704.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens]
 gi|190578418|gb|EDV18809.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens]
          Length = 330

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 138/330 (41%), Positives = 221/330 (66%), Gaps = 5/330 (1%)

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI---EV 169
           +VR+    EV+ +A   A+ +++D LVGK A+ NT+ ++ KKL   E+ D+E+ I   E 
Sbjct: 1   MVRDDFYIEVKSKALYEAKLKLVDCLVGKEASENTKNIYLKKLDAKELDDREVKISIDEQ 60

Query: 170 ADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +       FD+PG  G+ +G++N+ ++  K  G+ ++K +++ + +    L++ E+++L
Sbjct: 61  PNKGQSFPTFDVPGMPGSQMGVVNIGDMLGKTFGAKKQKLVKLKIPEAIKHLIKQETEKL 120

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           ID   +   +I++ E  GIVFLDE DKI   +      ++REGVQRDLLPL+EG+ ++TK
Sbjct: 121 IDEQLIIDKAIKITEEEGIVFLDEIDKIAGGNVNKKNDINREGVQRDLLPLIEGTIINTK 180

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
           YG I T+HILFIASGAFH++RP+DLLPE+QGR P+RV L  L+K D   IL + E++L  
Sbjct: 181 YGPIKTNHILFIASGAFHLARPSDLLPELQGRLPIRVELSPLSKDDLLKILKEPENSLPK 240

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY EL+KTEG+ L F E  +  +A  A ++N+ V +IGARRL T++E++LE++SF+A+++
Sbjct: 241 QYSELLKTEGVNLKFAESGLKCIAKYAAHINNEVENIGARRLYTLLEKILEEVSFTANEI 300

Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + KT+ IDA++V  ++       D+  FIL
Sbjct: 301 KGKTINIDAKFVEKNLDKITLSEDLSKFIL 330


>gi|257140628|ref|ZP_05588890.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
          Length = 476

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 139/307 (45%), Positives = 209/307 (68%), Gaps = 18/307 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +GSG+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           V   ++Q VE  GIVFLDE DKI +R+        VSR+GVQRDLLPLVEG++++TK G 
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGEAAARVSRQGVQRDLLPLVEGTTINTKCGM 298

Query: 291 INTDHIL 297
            +  H +
Sbjct: 299 EDRSHPV 305


>gi|4378705|gb|AAD19633.1| heat shock protein HslU [Buchnera aphidicola]
          Length = 277

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 125/277 (45%), Positives = 182/277 (65%), Gaps = 2/277 (0%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            +KEI+I V  ++  +     PG   +    L  LF   +G  +K   R+ ++     L 
Sbjct: 3   DEKEIEINVLASTMGVEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLLK 60

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +E+ +LI+ + + +++I  VE  GIVF+DE DKI  R   +G  VSREGVQRDLLPLVE
Sbjct: 61  EEEAAKLINQEEIKKEAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLVE 120

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G +VSTKYG + TDHILFIASGAF  S P+DL+PE+QGR P++V L+ L  +DF  ILT+
Sbjct: 121 GCTVSTKYGMVKTDHILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILTE 180

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             +++  QYK LMKTEG+ ++FT++ I  +A+ A  +N ++ +IGARRL T++E+++EDI
Sbjct: 181 PTASITAQYKALMKTEGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMEDI 240

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           SF+A D   KT+ I++EYV  H+    S  D+  FIL
Sbjct: 241 SFNACDNVGKTIEINSEYVGKHLDQLISNEDLGRFIL 277


>gi|289811631|ref|ZP_06542260.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 296

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 143/293 (48%), Positives = 196/293 (66%), Gaps = 13/293 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILD L+     +             R+ FRKKLR+G++ DKEI+I +A    
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +VS +
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSNQ 293


>gi|313619207|gb|EFR90974.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria
           innocua FSL S4-378]
          Length = 285

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/273 (41%), Positives = 179/273 (65%), Gaps = 1/273 (0%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D EI + V         FD+  G  +  ++  +     M   +KKK +++V++    L  
Sbjct: 7   DDEI-VTVEVKEQQNPMFDMMRGTGMDQMSGMQDALSGMFPSKKKKRKVTVREAKKILFE 65

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           DE+ +LID D +  + I   E  G++F+DE DKI +++ G    VSREGVQRD+LP+VEG
Sbjct: 66  DEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEG 125

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L  L + DF  ILT+ 
Sbjct: 126 SQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEP 185

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ LI QYK L+KTEGI L FT+++++ +A++A  +N    +IGARRL T++E++LED+ 
Sbjct: 186 DNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLL 245

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
           F A ++  +++ +   YV   +    +  D+ H
Sbjct: 246 FEAPEINMESIKVTENYVNEKLAPIMTNKDLTH 278


>gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
 gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           intermedium LMG 3301]
          Length = 424

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 115/420 (27%), Positives = 176/420 (41%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V     S++   I       F  
Sbjct: 253 AGLDKI--ISARGEKTSIGF--------------GATVK----SVDERRI----GDVFRE 288

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L 
Sbjct: 289 LEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELS 348

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 349 FHDDALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVVD 403


>gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
 gi|166214795|sp|A6X117|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum
           anthropi ATCC 49188]
          Length = 424

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 115/420 (27%), Positives = 176/420 (41%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKSSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V     S++   I       F  
Sbjct: 253 AGLDKI--ISARGEKTSIGF--------------GATV----RSVDERRI----GDVFRE 288

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L 
Sbjct: 289 LEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMESVELS 348

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 349 FHDDALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVVD 403


>gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
 gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026]
          Length = 424

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 174/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR     IG          +  V+   +   +  +  + +L         
Sbjct: 253 AGLDRI--ISARGEKTSIGFG------ATVKSVDERRIGEVFKELEPEGLLKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +D+
Sbjct: 298 ----GLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 354 LRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403


>gi|309805932|ref|ZP_07699962.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167671|gb|EFO69820.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 03V1-b]
          Length = 313

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 120/292 (41%), Positives = 188/292 (64%), Gaps = 4/292 (1%)

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           + R     KL+ G + + E+ + V   +      D+ G   +   ++S L   +M   R 
Sbjct: 26  DKRASVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGM---DMSSLMGGLMPKKRV 82

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +  +SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      
Sbjct: 83  -RRTLSVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQ 141

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV 
Sbjct: 142 VSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVE 201

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  L +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A ++N    ++G
Sbjct: 202 LNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVG 261

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 262 ARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 313


>gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
 gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           capsulatus SB 1003]
          Length = 424

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 169/414 (40%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPRDICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHGSKQDVELAKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD    I  R  G+ IG   +          E       +  +  + +L          
Sbjct: 251 GLDRI--IAQRGKGSAIGFGADVKDP------ESRGAGELFKELEPEDLLKF-------- 294

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++
Sbjct: 295 ---GLIPEFVGRLPVIATLEDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTPDAM 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L+++ME +L D  F    ++  + VV++ E V 
Sbjct: 352 KAIAARAIKRKT-----GARGLRSIMEDILLDTMFELPGMEGVREVVVNDEAVE 400


>gi|309804156|ref|ZP_07698234.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163739|gb|EFO66008.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 11V1-d]
          Length = 314

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/292 (41%), Positives = 189/292 (64%), Gaps = 4/292 (1%)

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           + R     KL+ G + + E+ + V   +      D+ G   +   ++S L   +M   R 
Sbjct: 27  DKRASVADKLKKGLLENHEVTLYVESATKANQMNDMIGQMGM---DMSSLMGGLMPKKRV 83

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +  +SV+     L+++E+ +LI+ D++++ ++   +  GI+F+DE DK VA D      
Sbjct: 84  -RRTLSVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQ 142

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+QGRFP+RV 
Sbjct: 143 VSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVE 202

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  L +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I+ LA +A ++N    ++G
Sbjct: 203 LNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAINKLAKIAYDVNQGTDNVG 262

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T++E++LEDI F   D+ E  + +  +YV   +GD  +  D+  FIL
Sbjct: 263 ARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 314


>gi|153803829|ref|ZP_01958415.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae
           MZO-3]
 gi|124120635|gb|EAY39378.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae
           MZO-3]
          Length = 287

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 149/287 (51%), Positives = 193/287 (67%), Gaps = 13/287 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
             +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EG
Sbjct: 241 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEG 287


>gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
 gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus
           HTCC2516]
          Length = 422

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 167/413 (40%), Gaps = 79/413 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 65  TPREICEVLDDYVIGQMHAKRVLSVAVHNHYKRLNHADKSDIELAKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G+ +G   +      +  VE   V   + S+  + +L          
Sbjct: 251 GLDKI--IAQRGKGSAMGFGAD------VRDVEERGVGEVFKSLEPEDLLKF-------- 294

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L   E   L FT+D++
Sbjct: 295 ---GLIPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFDLEDTKLTFTDDAM 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            A+A  A+   +     GAR L+++ME +L D  F    +     VV++ E V
Sbjct: 352 KAIAKRAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVNEVVVNEEAV 399


>gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [butyrate-producing bacterium SS3/4]
          Length = 433

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 168/417 (40%), Gaps = 79/417 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R     +   +L   NIL++GPTG GK
Sbjct: 65  LKPKEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRITSKMESDVDLQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+L G PF   + T  TE GYVG +VE I+  L+  A N V  +    +    
Sbjct: 125 TYLAQTLAKLLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADNDVSRAEYGII---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 181 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 206 VQQALLKILEGTVASVPPQGGRKHPQQE------------LIQIDT---TNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I +R   + IG   + V +                  NTD    +       
Sbjct: 251 DGLERI--IESRLETSSIGFGAKIVDKK-----------------NTDISKLLKQAMPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L  L++     ILT+ ++ L+ QY++L + + + L+FT D+
Sbjct: 292 LTKFGLIPEFVGRVPVMVSLDLLDEDSLVRILTEPKNALVKQYQKLFELDDVKLEFTPDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +  +A +AV   +     GAR L+ +ME V+ D  +    D       +  + V   
Sbjct: 352 VHEIAHMAVERKT-----GARGLRAIMESVMMDTMYEVPSDSNVGICTVTKDAVDGK 403


>gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
 gi|238686732|sp|A7ILC7|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter
           autotrophicus Py2]
          Length = 422

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L   DKI++  S     +   G Q  + P  +       +  +  + +L         
Sbjct: 251 AGL---DKIISSRSKGSTSI---GFQAKVAPPEDRRPGEV-FREVEPEDLL--------- 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++   + IL++ ++ L+ QY+ L + E + L   E++
Sbjct: 295 --KYGLIPEFIGRLPVLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E V  
Sbjct: 353 LGAIARKAIERKT-----GARGLRSIMESILLDTMFDLPGLEGVEEVVISREVVEQ 403


>gi|229552213|ref|ZP_04440938.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314399|gb|EEN80372.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus
           rhamnosus LMS2-1]
          Length = 311

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/292 (40%), Positives = 186/292 (63%), Gaps = 4/292 (1%)

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           N R    ++L  G + D+EI + V D        D+ G      ++LS+    +M   + 
Sbjct: 24  NRRLSVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYGQMG---IDLSDTIGALMPKKKV 80

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +  M+V++     +++ESD+L++   ++ D+IQ  EN GI+F+DE DKI A D      
Sbjct: 81  -ERTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGE 139

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
           VSREGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF  ++P+DL+ E+QGRFP+RV 
Sbjct: 140 VSREGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVE 199

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           LK L + DF  ILT+ ++ LI QY  L+  +G+ + FT+++++ +A++A  +N    +IG
Sbjct: 200 LKDLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIG 259

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL T++E++LED+ +   D+   +V +  +YV   IG   ++++M  +IL
Sbjct: 260 ARRLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 311


>gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium
           vitis S4]
 gi|254763828|sp|B9JVD6|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 425

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/420 (25%), Positives = 172/420 (40%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQRQAKKILSVAVHNHYKRLSHASKGGDVELAKSNILLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG                + VS +   +               
Sbjct: 254 AGLDKI--ISARGEKTSIGFG-------------ATVVSPEDRRV---------GEVLRE 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L 
Sbjct: 290 LEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELS 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ED++  +A  A+   +     GAR L+++ME++L D  F   +L+  + VVI  E VR
Sbjct: 350 FHEDALREIARKAITRKT-----GARGLRSIMEKILLDTMFELPELEGVREVVISDEVVR 404


>gi|294340352|emb|CAZ88733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiomonas sp.
           3As]
          Length = 422

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 183/415 (44%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  TPAEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      +  ++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEIERAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K++  R   +GIG S        +      SVS  +     D ++        
Sbjct: 252 AF-DGLEKVIRNRSEKSGIGFS------ATVKTQSERSVSETFLQAQPDDLVKF------ 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     ILT  +++L+ QY++L + +GI L+F   
Sbjct: 299 -----GLIPELVGRLPVVAALEELDEPALIEILTAPKNSLVKQYQKLFEMDGIKLEFRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           ++DA+A  A+   +     GAR L++++E+ L D+ F   + Q   +VV+D   +
Sbjct: 354 ALDAIAHKALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVDENVI 403


>gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
 gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya
           novella DSM 506]
          Length = 423

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 168/418 (40%), Gaps = 81/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R           EL   NILL+GPTG G
Sbjct: 65  TPKEICKVLDDYVIGQFHAKRVLSVAVHNHYKRLNHATKHAGDVELAKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID +++  S + S      G 
Sbjct: 182 -----------------------------------YIDEID-KISRKSDNPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTSNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I +R  G  IG S       ++   E       +  +  + +L        
Sbjct: 251 FAGLDKI--ISSRGKGTSIGFS------AVVAAPEDRKPGEVFREVEPEDLL-------- 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++   + IL + ++ L+ QY+ L + E + L   E+
Sbjct: 295 ---KYGLIPEFIGRLPVIATLGDLDEEALKKILAEPKNALVKQYQRLFEMENVELTIHEE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++ A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E V  +
Sbjct: 352 ALGAIARKAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVVEQN 404


>gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72]
 gi|166214754|sp|A1K782|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72]
          Length = 422

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 179/418 (42%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI   LD+Y+IGQ  AKR +++A+ N ++R +  +  +DE  L   NILL+GPTG G
Sbjct: 66  TPHEICQILDQYVIGQAQAKRNLSVAVYNHYKRLRHLSGRQDEVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V ++++  V   
Sbjct: 126 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  +A               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASIPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D +  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFIQVDTTNVLFICG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  DK++  R    GIG   E      +   +G +++  +  +  + ++       
Sbjct: 250 GAF-DGLDKVIRNRTEKMGIGFGAE------VKSRQGKNLTETFRQVEPEDLVKF----- 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L++     IL + ++ L+ QY++L   EG+ L+   
Sbjct: 298 ------GLIPEFVGRLPVVATLQELDEDALIQILIEPKNALVKQYQKLFSMEGVDLEIRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            ++ A+A  A+   +     GAR L++++E  L DI +    L   + VV+D   +  
Sbjct: 352 AALHAVARKAIKRKT-----GARGLRSILEAALLDIMYDLPQLDGVEKVVVDENTIEE 404


>gi|254429578|ref|ZP_05043285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
 gi|196195747|gb|EDX90706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax
           sp. DG881]
          Length = 426

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 174/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
            P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +     RDE+     NILL+GPTG G
Sbjct: 67  KPNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   ++  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSNMLFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R    GIG S E   +D       ++ +     ++ +    +  G   
Sbjct: 253 FAGLDKV--IRERSEKGGIGFSAEVKSKD-------NTRNLGELLVDVEPEDLVKYG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT+  + L  QY  L + EG+ LDF +D
Sbjct: 301 ------LIPEFIGRLPVIATLEELSEEALIQILTEPRNALTKQYARLFEMEGVELDFRDD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           ++ A+A+ A+   +     GAR L++++E VL D  +    +     VVID+  ++
Sbjct: 355 ALRAIANKAMVRKT-----GARGLRSILEGVLLDTMYQVPSMDSVAKVVIDSPTIK 405


>gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium
           caulinodans ORS 571]
 gi|172047857|sp|A8HYF4|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 422

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 170/417 (40%), Gaps = 79/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L   DKI++  S  G  +   G +   +       +   +  +  + +L         
Sbjct: 251 AGL---DKIISSRSKGGTSI-GFGAKVAPVEERRPGEL---FREVEPEDLL--------- 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++  + IL + ++ L+ QY+ L + E + L   E++
Sbjct: 295 --KYGLIPEFIGRLPVLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E V  +
Sbjct: 353 LGAIARKAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVVEQN 404


>gi|307544937|ref|YP_003897416.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
 gi|307216961|emb|CBV42231.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM
           2581]
          Length = 425

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 171/429 (39%), Gaps = 80/429 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREI   LD Y+IGQ  AK  +++A+ N ++R +  A    EL   NILL+GPTG GKT 
Sbjct: 68  PREIRHTLDDYVIGQDRAKMVLSVAVYNHYKRLRYGAKDEVELGKSNILLIGPTGSGKTL 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V      
Sbjct: 128 LAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY----- 182

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              + I          S TR+V  + ++   +  K I+   A                  
Sbjct: 183 --IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTTAQVPPQGG----------- 227

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                               +   Q+                  V   ++  +       
Sbjct: 228 -------------------RKHPQQEFL---------------QVDTTNMLFIVGGAFAG 253

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           LD+   I  R    GIG + E   +D                ++ +    +  G      
Sbjct: 254 LDKV--IRDRAEKGGIGFNAEVKTKDETK-------GVGDLLLDVEPEDLVKFG------ 298

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L  L +     ILT+ +++LI QY  L   EG+ LDF ED++ 
Sbjct: 299 ---LIPEFVGRLPVIATLTELTEDALIQILTEPKNSLIKQYARLFDMEGVELDFREDALR 355

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
           A+A  A+  N+     GAR L++++E VL D  +    ++    VVIDA  +        
Sbjct: 356 AVAAKAMARNT-----GARGLRSILESVLLDTMYEIPSIEGVSKVVIDASVIANESEPLL 410

Query: 428 --SETDMYH 434
             S+ D   
Sbjct: 411 IYSQQDESR 419


>gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
 gi|254763858|sp|C3MA45|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 111/420 (26%), Positives = 170/420 (40%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG                +  S +   +               
Sbjct: 254 AGLDKI--ISARGEKTSIGFG-------------ATVRSPEDRRV---------GEVLRE 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L 
Sbjct: 290 LEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELT 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ED++  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 350 FHEDALREIAKRAIIRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404


>gi|327312567|ref|YP_004328004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola F0289]
 gi|326945451|gb|AEA21336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola F0289]
          Length = 412

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/419 (26%), Positives = 173/419 (41%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GK
Sbjct: 63  KPKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 123 TLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 179 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 203 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G                S  +        D    +       
Sbjct: 247 AFDGIERKIAQRLNTHTVGY--------------NSVQNVARI----DKADLMKYVLPQD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L   +GI L FT+ +
Sbjct: 289 LKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFSMDGITLSFTDPA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     + K+  +  EYVR  +  
Sbjct: 349 LDYIVDKAVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQLDK 402


>gi|296136116|ref|YP_003643358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
 gi|295796238|gb|ADG31028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas
           intermedia K12]
          Length = 420

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 183/415 (44%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  TPTEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      +  ++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEIERAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K++  R   +GIG S        +      SVS  +     D ++        
Sbjct: 252 AF-DGLEKVIRNRSEKSGIGFS------ATVKTQSERSVSETFLQAQPDDLVKF------ 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     ILT  +++L+ QY++L + +GI L+F   
Sbjct: 299 -----GLIPELVGRLPVVAALEELDEPALVEILTAPKNSLVKQYQKLFEMDGIKLEFRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           ++DA+A  A+   +     GAR L++++E+ L D+ F   + Q   +VV+D   +
Sbjct: 354 ALDAIAHKALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVDENVI 403


>gi|319943617|ref|ZP_08017898.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742850|gb|EFV95256.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 421

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/415 (26%), Positives = 176/415 (42%), Gaps = 82/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD+Y+IGQQ AKR +A+A+ N ++R +   D  D EL   NILLVGPTG GKT
Sbjct: 66  PSEIAAILDQYVIGQQKAKRTLAVAVYNHYKRLRHKGDKDDVELTKSNILLVGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LARL   PF+  + T  TE GYVG +VE II+ L+      + +++   V     
Sbjct: 126 LLAQTLARLLNVPFVMADATTLTEAGYVGEDVESIIQKLLAACNYEIDKAQTGIVY---- 181

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 182 ---IDEIDKISRKADNPSITRDVSGEGVQQALL--KLIEGTVASIPPQGG---------- 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +                   + D V  D+  ++   G  
Sbjct: 227 --------------------RKHP-----------------NQDFVQVDTTNILFICGGA 249

Query: 248 FLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           F D  DK++  R   +GIG               G+ V    G+ +              
Sbjct: 250 F-DGMDKVIRDRSERSGIGF--------------GAQVK---GASDRSLSELFQDIEPDD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L+++    ILT+ ++ L+ QY++L   EG+ LD    +
Sbjct: 292 LIKFGLIPELVGRLPVLATLDELDEATLVRILTEPKNALVKQYQKLFSMEGVELDIRPAA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E  L DI +    L+  + VVID   + 
Sbjct: 352 LKAIARQALKRKA-----GARGLRSILEHALIDIMYELPGLKNVEKVVIDENVIE 401


>gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
 gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis
           sp. ATCC 49242]
          Length = 422

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 171/422 (40%), Gaps = 90/422 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTGVGK
Sbjct: 65  TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YVDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG               G++V                   F  
Sbjct: 251 AGLEKI--ISARGRSTSIGF--------------GATVQAPDDR--------RTGDIFRQ 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            +P D     L+PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E + L 
Sbjct: 287 VQPEDLLKFGLIPEFVGRLPVIATLEDLDEDALKKILTEPKNALVKQYQRLFEMENVELT 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D++ A+A  A+  ++     GAR L+++ME +L D  F    L+  + VVI  E V 
Sbjct: 347 FQDDALSAVARKAIERHT-----GARGLRSIMEGILLDTMFDLPGLEGVEQVVIGPEVVE 401

Query: 421 LH 422
             
Sbjct: 402 GK 403


>gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
 gi|166215207|sp|A6U7U8|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           medicae WSM419]
          Length = 425

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 109/420 (25%), Positives = 171/420 (40%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG                +  + +   +               
Sbjct: 254 AGLDKI--ISARGEKTSIGFG-------------ATVRAPEDRRV---------GEVLRE 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+
Sbjct: 290 LEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELN 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ED++  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 350 FHEDALREIARRAIVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVK 404


>gi|260575567|ref|ZP_05843565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sp. SW2]
 gi|259022210|gb|EEW25508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sp. SW2]
          Length = 421

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 170/414 (41%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPRDICKVLDDYVIGQIHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFS 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R+ G+ IG   E      +   E   V   +  +  + +L          
Sbjct: 251 GLEKI--IAQRNKGSAIGFGAE------VKGPEDRGVGELFKELEPEDLLKF-------- 294

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++
Sbjct: 295 ---GLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVTLTFTPDAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
            A+A  A+   +     GAR L+++ME +L D  F    +   T VV+  + V 
Sbjct: 352 VAIAKRAIKRKT-----GARGLRSIMEDILLDTMFELPGMAGVTEVVVKEDAVN 400


>gi|84515417|ref|ZP_01002779.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510700|gb|EAQ07155.1| ATP-dependent protease ATP-binding subunit [Loktanella
           vestfoldensis SKA53]
          Length = 421

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 169/428 (39%), Gaps = 79/428 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ  AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPSDICAVLDDYVIGQVHAKRVLSVAVHNHYKRLNHADKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G+G+G   +    D   + E           + +    +  G     
Sbjct: 251 GLDKI--IARRSKGSGMGFGADVKDVDERGIGE--------VFQDLEPEDLLKFG----- 295

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L FT+D++
Sbjct: 296 ----LIPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFELENTKLTFTDDAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDF 426
            A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V   +   
Sbjct: 352 TAIAKRAIKRKT-----GARGLRSIMEGILLDTMFDLPGMDTVTEVVVNEEAVTSDVQPL 406

Query: 427 PSETDMYH 434
               D+  
Sbjct: 407 MIHDDVKK 414


>gi|304391392|ref|ZP_07373334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
           R2A130]
 gi|303295621|gb|EFL89979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp.
           R2A130]
          Length = 427

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 169/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  L+ Y+IGQ  AKR +++A+ N ++R    A+  D EL   NI+L+GPTG GK
Sbjct: 68  TPQEILDVLNDYVIGQPHAKRVLSVAVHNHYKRLNHAAENEDVELAKSNIMLIGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KITRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFIAGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG               G++V +     +        +     
Sbjct: 254 AGLDKI--ISDRGRQTGIGF--------------GANVESP---EDRKTGELFKALEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED+
Sbjct: 295 LLRFGLIPEFVGRIPVLATLEDLDEDSLVQILSEPKNALIKQYQRLFEMEEVTLSFQEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L D  F    L+  + VVI  E V 
Sbjct: 355 LRAIAQKAITRKT-----GARGLRSIIEGILLDTMFELPSLEGVQEVVISEEVVN 404


>gi|325268721|ref|ZP_08135350.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           multiformis DSM 16608]
 gi|324988965|gb|EGC20919.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           multiformis DSM 16608]
          Length = 412

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 175/425 (41%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           K+     P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG
Sbjct: 57  KIKKVPKPKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 117 STGTGKTLLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVEAAERG 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 177 IV-----------FID-----------------------------EIDKIARKSDNPSIT 196

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 197 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNI 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G                S  +        D    + 
Sbjct: 241 LFICGGAFDGIERKIAQRLNTHTVGY--------------NSVQNVARI----DKADLMK 282

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L   +GI L
Sbjct: 283 YVLPQDLKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFGMDGITL 342

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+ ++D + D AV        +GAR L++++E V+ D  F     + K+  +  EYVR
Sbjct: 343 SFTDPALDYIVDKAVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVR 397

Query: 421 LHIGD 425
             +  
Sbjct: 398 QQLDK 402


>gi|260432981|ref|ZP_05786952.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416809|gb|EEX10068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 422

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 170/415 (40%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQARAKRVLSVAVHNHYKRLNHAQKAGSDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R  G+ +G   +    D   + E           + +    +  G   
Sbjct: 251 FAGLDKI--IAQRGKGSAMGFGADVRDNDERGVGE--------IFQDLEPEDLLKFG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + LDFTED
Sbjct: 298 ------LIPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELENVELDFTED 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 352 ALKAIAKKAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTKVVVNEEAV 401


>gi|52425901|ref|YP_089038.1| ATP-dependent protease ATP-binding subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|61211443|sp|Q65RF7|CLPX_MANSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52307953|gb|AAU38453.1| ClpX protein [Mannheimia succiniciproducens MBEL55E]
          Length = 412

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 173/418 (41%), Gaps = 80/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 65  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSNHGIADVELGKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +I+ L+        +++R  +    
Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVIQKLLQNCDYDTEKAQRGIIY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVASIPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  V    I  +     
Sbjct: 227 ---------------------RKHPQQE---------------MLRVDTSKILFICGGAF 250

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD    K + + SG G     +G + ++       S++     I T+ ++        
Sbjct: 251 AGLDRVVQKRIHKGSGIGFDAEVKGKEDEV-------SLTDLLKQIETEDLI-------- 295

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT +
Sbjct: 296 ---KYGLIPEFIGRLPVVAPLSELDEKALVQILTEPKNALTKQYQALFGLENVELEFTPE 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +++A+A  A+   +     GAR L++++E  L D  +    L+    VV+D   +  H
Sbjct: 353 ALNAMAKKALERKT-----GARGLRSIVEGALLDTMYDLPSLEGLVKVVVDEAVINEH 405


>gi|194595679|gb|ACF77122.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum
           brasilense]
          Length = 422

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 166/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G  IG   +    D                                
Sbjct: 251 AGLDKI--IAQRGKGTSIGFGADVRGPDERS----------------------TGDILRE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+
Sbjct: 287 VEPEDLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F++D++  ++  A+   +     GAR L+++ME +L D  F    L   ++++++ E V 
Sbjct: 347 FSDDALRTISHKAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVVE 401

Query: 421 LHIGDF 426
                 
Sbjct: 402 GRAKPL 407


>gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti
           1021]
 gi|307301081|ref|ZP_07580850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
 gi|307317815|ref|ZP_07597253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|21263475|sp|Q92QQ2|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit
           [Sinorhizobium meliloti 1021]
 gi|306896577|gb|EFN27325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti AK83]
 gi|306904036|gb|EFN34622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium
           meliloti BL225C]
          Length = 425

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/420 (25%), Positives = 171/420 (40%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NI+LVGPTG GK
Sbjct: 68  TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG                +  + +   +               
Sbjct: 254 AGLDKI--ISARGEKTSIGFG-------------ATVRAPEDRRV---------GEVLRE 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+
Sbjct: 290 LEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELN 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ED++  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E V+
Sbjct: 350 FHEDALREIARRAIVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404


>gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit [Brucella canis ATCC
           23365]
 gi|189082485|sp|A9M5C1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           canis ATCC 23365]
          Length = 424

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/420 (27%), Positives = 178/420 (42%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+             + +DT    +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQE------------FLQVDT---TNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR     IG               G++V     S++   I       F  
Sbjct: 253 ASLDRI--ISARGEKTSIGF--------------GATVK----SVDERRI----GEVFKE 288

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L 
Sbjct: 289 LEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELV 348

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D++ A+A+  V   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 349 FHDDALRAIANKVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403


>gi|110834072|ref|YP_692931.1| ATP-dependent protease ATP-binding subunit ClpX [Alcanivorax
           borkumensis SK2]
 gi|123345580|sp|Q0VQ89|CLPX_ALCBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110647183|emb|CAL16659.1| ATP-dependent Clp protease, ATP-binding subunitClpX [Alcanivorax
           borkumensis SK2]
          Length = 426

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 175/416 (42%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
            P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +     RDE+     NILL+GPTG G
Sbjct: 67  KPNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 127 KTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   ++  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSNMLFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R    GIG S E   +D       ++ +     ++ +    +  G   
Sbjct: 253 FAGLDKV--IRERSEKGGIGFSAEVKSKD-------NTRNLGELLVDVEPEDLVKYG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT+  + L  QY  L + EG+ LDF ED
Sbjct: 301 ------LIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQYARLFEMEGVELDFRED 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           ++ A+A+ A+   +     GAR L++++E VL D  +    ++    VVID+  ++
Sbjct: 355 ALKAIANKAMVRKT-----GARGLRSILESVLLDTMYQVPSMESVAKVVIDSPTIK 405


>gi|311695075|gb|ADP97948.1| ATP-dependent Clp protease ATP-binding subunit ClpX [marine
           bacterium HP15]
          Length = 427

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/414 (26%), Positives = 170/414 (41%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK  +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRNTLDEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKGDVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   ++  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVDTGNMLFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R   N IG S     +D      G  +      + T+ ++         
Sbjct: 255 AGLDKV--IRERTEKNSIGFSASVASQDDAK-NTGDVIK----DVETEDLV--------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ +++L  QY++L   EG+ LDF ED+
Sbjct: 299 --KYGLIPEFVGRLPVVATLNELDEEALVQILTEPKNSLTKQYQKLFDMEGVELDFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           + A+A  A+   +     GAR L+++ME  L D  +      + T VVID   +
Sbjct: 357 LRAVARKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVTKVVIDESVI 405


>gi|302345890|ref|YP_003814243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica ATCC 25845]
 gi|302150179|gb|ADK96441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 176/425 (41%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD YIIGQ +AKR +A+A+ N ++R Q P D    E+   NI++VG
Sbjct: 57  KLKKVPKPKEIKQYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKDDDGVEIEKSNIIMVG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 117 STGTGKTLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERG 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 177 IV-----------FID-----------------------------EIDKIARKSDNPSIT 196

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 197 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNI 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G +   VQ                     D    + 
Sbjct: 241 LFICGGAFDGIERKIAQRMNTHTVGYNS--VQNVA----------------KIDKNDLMK 282

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L
Sbjct: 283 YVLPQDLKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIEL 342

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FTE ++D + D  V        +GAR L++++E V+ D  F     + K+  +  EYVR
Sbjct: 343 TFTEAALDYIVDKGVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVR 397

Query: 421 LHIGD 425
             +  
Sbjct: 398 QQLDK 402


>gi|146277489|ref|YP_001167648.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166215195|sp|A4WSH9|CLPX_RHOS5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145555730|gb|ABP70343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 421

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 163/400 (40%), Gaps = 78/400 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKNDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R  G+GIG   E    D   + E                LF       + 
Sbjct: 251 GLEKI--IAQRGKGSGIGFGAEVKDPDSRGVGE----------------LFTELEPEDLL 292

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++
Sbjct: 293 K-FGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+A  A+   +     GAR L+++ME +L D  F    L
Sbjct: 352 TAIAKRAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|56478266|ref|YP_159855.1| ATP-dependent protease ATP-binding subunit ClpX [Aromatoleum
           aromaticum EbN1]
 gi|62286505|sp|Q5P160|CLPX_AZOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56314309|emb|CAI08954.1| ATP-dependent Clp protease ATP-binding,subunit clpX [Aromatoleum
           aromaticum EbN1]
          Length = 422

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 181/422 (42%), Gaps = 83/422 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGP 61
           T   +P+EI   L++Y+IGQ  AKR +++A+ N ++R +  +  ++E  L   NILL+GP
Sbjct: 62  TTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++   
Sbjct: 122 TGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGI 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V         + I          S TR+V  + ++   +  K I+  VA           
Sbjct: 182 VY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASIPPQGG---- 228

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                                      +                   + D +  D+  ++
Sbjct: 229 --------------------------RKHP-----------------NQDFIQIDTTNIL 245

Query: 242 ENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
              G  F D  +K++  R    GIG   E      +   EG +VS  +  +  + ++   
Sbjct: 246 FICGGAF-DGLEKVIRNRTEKIGIGFGAE------IKSREGKNVSESFRQVEPEDLIKF- 297

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L++     IL + ++ L+ QY++L   EG+ L
Sbjct: 298 ----------GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +    ++ A+A  A+   +     GAR L++++E  L DI +    L+  + VV+D   +
Sbjct: 348 EIRPAALHAVARKAIRRKT-----GARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTI 402

Query: 420 RL 421
             
Sbjct: 403 EE 404


>gi|288803881|ref|ZP_06409306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica D18]
 gi|288333646|gb|EFC72096.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           melaninogenica D18]
          Length = 412

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/425 (27%), Positives = 176/425 (41%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG
Sbjct: 57  KLKKVPKPKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 117 STGTGKTLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVPAAERG 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 177 IV-----------FID-----------------------------EIDKIARKSDNPSIT 196

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 197 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNI 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G +   VQ                     D    + 
Sbjct: 241 LFICGGAFDGIERKIAQRMNTHTVGYNS--VQNVA----------------KIDKNDLMK 282

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L
Sbjct: 283 YVLPQDLKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIEL 342

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FTE ++D + D  V        +GAR L++++E V+ D  F     + K+  +  EYVR
Sbjct: 343 TFTEAALDYIVDKGVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVR 397

Query: 421 LHIGD 425
             +  
Sbjct: 398 QQLDK 402


>gi|294672821|ref|YP_003573437.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prevotella
           ruminicola 23]
 gi|294472231|gb|ADE81620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           ruminicola 23]
          Length = 412

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/419 (26%), Positives = 177/419 (42%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ DAKR +A+A+ N ++R Q P D    E+   NI++VG TG GK
Sbjct: 65  KPKEIKEYLDQYVIGQDDAKRYLAVAVYNHYKRLQQPVDDDGVEIEKSNIIMVGSTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R  V    
Sbjct: 125 TLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 181 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 205 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G                S  + +      D    +       
Sbjct: 249 AFDGIERKIAQRMNTHVVGY--------------NSVTNVR----KIDKNDLMKYIVPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  HL  L++     ILT+ ++++I QYK+L + +G+ L F +++
Sbjct: 291 LKSFGLIPEIIGRLPVLTHLNPLDRKALERILTEPKNSIIRQYKKLFEMDGVALTFDQEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D L D AV        +GAR L++++E V+ D  +     + K   + A+YV   +  
Sbjct: 351 LDTLVDKAVEYK-----LGARGLRSIVESVMMDAMYDLPSKKTKKFNVTADYVSKQLDK 404


>gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
 gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp.
           TrichSKD4]
          Length = 431

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 168/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILL GPTG GK
Sbjct: 75  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHSSKNNDVELAKSNILLAGPTGCGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 135 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 190

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 191 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 215

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 216 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R +   IG       +  +   E   V   +  +  + +L         
Sbjct: 261 AGLDKI--IADRGTQTSIGF------KANVQAPEDRRVGELFSVMEPEDLLKF------- 305

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + ++ L+ QY+ L + E + L F E++
Sbjct: 306 ----GLIPEFVGRLPVIATLEDLDEDALVTILVEPKNALVKQYQRLFEMEQVELTFHEEA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E +L D  +    L+  K VVI  E V
Sbjct: 362 LRAIARKAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVV 410


>gi|121997403|ref|YP_001002190.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira
           halophila SL1]
 gi|167009016|sp|A1WUM6|CLPX_HALHL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121588808|gb|ABM61388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halorhodospira halophila SL1]
          Length = 426

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/413 (25%), Positives = 170/413 (41%), Gaps = 79/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI  ELD+Y+IGQ+ AK+ +++A+ N ++R +      D EL   NILL+GPTG GKT
Sbjct: 69  PHEINRELDQYVIGQEHAKKVLSVAVYNHYKRLESRTSQDDVELTKSNILLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQHGIVY---- 184

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+   A                 
Sbjct: 185 ---IDEIDKVSRKADNPSITRDVSGEGVQQALL--KLIEGTTASVPPQ------------ 227

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                          GRK   +  V                    V   ++  +      
Sbjct: 228 --------------GGRKHPQQEFV-------------------QVDTSNMLFICGGAFA 254

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R    GIG S E         V  +  + +                    
Sbjct: 255 GLDKV--IQERSERGGIGFSAEIKGEGERASVGETLQTVE----------------PSDL 296

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     IL + ++ L+ QY++L + EG+ LD  +D++
Sbjct: 297 VRYGLIPEFVGRLPVIATLNELDQEALVQILREPKNALVKQYQKLFEMEGVELDLRDDAL 356

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+AD A+   +     GAR L+T++E+VL +  +    ++    VV+D   +
Sbjct: 357 RAVADKAMERKT-----GARGLRTIIEQVLLETMYELPSMENVSKVVVDESVI 404


>gi|311280665|ref|YP_003942896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
 gi|308749860|gb|ADO49612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
          Length = 424

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 170/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I                   
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   I  R ++G+GIG               G++V  K    N   +L  A     
Sbjct: 252 AGLDKV--IANRVETGSGIGF--------------GATVKAKSEKANEGELL--AQAEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 294 DLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 354 ALDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
 gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           mucosa ATCC 25996]
          Length = 422

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 187/435 (42%), Gaps = 89/435 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 65  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 227 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +        +G F +
Sbjct: 249 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENAD-------ITGLFEI 287

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+
Sbjct: 288 VEPEDLIKFGLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVQLE 347

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           F E+++ ++A  A+   +     GAR L++++ER L D  +   DL+  T VVID + + 
Sbjct: 348 FEEEALRSIARQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVVIDKDVIE 402

Query: 421 LHIGDFPSETDMYHF 435
                     D   +
Sbjct: 403 KGKQPKLLREDGSEY 417


>gi|260596810|ref|YP_003209381.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           turicensis z3032]
 gi|260215987|emb|CBA28640.1| ATP-dependent Clp protease ATP-binding subunit clpX [Cronobacter
           turicensis z3032]
          Length = 424

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 172/417 (41%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
             LD+   I  R    SG G G + +G  +        S V  +      D I F     
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKGKSQKATEGELLSQVEPE------DLIKF----- 298

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F 
Sbjct: 299 -------GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFR 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++A+A  A++  +     GAR L++++E  L +  +    + E + VVID   +
Sbjct: 352 DEALEAIAKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMDEVEKVVIDESVI 403


>gi|308050307|ref|YP_003913873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas
           balearica DSM 9799]
 gi|307632497|gb|ADN76799.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas
           balearica DSM 9799]
          Length = 425

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 168/424 (39%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +   D  + EL   NILL+GPTG GK
Sbjct: 68  TPHEIRAHLDEYVIGQEQAKKVLAVAVYNHYKRLRHGGDEAEVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 256

Query: 247 VFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                 DK++ +   +G GIG   E   +D    +  +    +                 
Sbjct: 257 ------DKVIEQRAFTGTGIGFGAEVRSKDDGKSLTETFARVE----------------P 294

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L   EG+ L+F E
Sbjct: 295 EDLVKYGLIPEFIGRLPVVATLGELDEDALIQILQEPKNALTKQYGALFDLEGVELEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L++++E VL D  +     Q+   VV+D   ++   
Sbjct: 355 DALRAIARKAMERKT-----GARGLRSIVEGVLLDTMYDLPSAQDVSKVVVDESVIKGET 409

Query: 424 GDFP 427
               
Sbjct: 410 APLM 413


>gi|269214372|ref|ZP_05986447.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
 gi|269209943|gb|EEZ76398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           lactamica ATCC 23970]
          Length = 442

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 177/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P      EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 210

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 211 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 255

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 256 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 277

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 278 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 321

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 322 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 382 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 432


>gi|156935009|ref|YP_001438925.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           sakazakii ATCC BAA-894]
 gi|166214776|sp|A7MFI7|CLPX_ENTS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|156533263|gb|ABU78089.1| hypothetical protein ESA_02860 [Cronobacter sakazakii ATCC BAA-894]
          Length = 424

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 173/417 (41%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
             LD+   I  R    SG G G + +G  +        S V  +      D I F     
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKGKSQKATEGELLSQVEPE------DLIKF----- 298

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F 
Sbjct: 299 -------GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFR 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++A+A  A++  +     GAR L++++E  L +  +    ++E + VVID   +
Sbjct: 352 DEALEAIAKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEEVEKVVIDESVI 403


>gi|126462594|ref|YP_001043708.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639634|ref|YP_002525896.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides KD131]
 gi|332558620|ref|ZP_08412942.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
 gi|166215194|sp|A3PKS0|CLPX_RHOS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763860|sp|B9KJU8|CLPX_RHOSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126104258|gb|ABN76936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160415|gb|ACM01395.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodobacter
           sphaeroides KD131]
 gi|332276332|gb|EGJ21647.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides WS8N]
          Length = 421

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 163/400 (40%), Gaps = 78/400 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R  G+GIG   E    D   + E                LF       + 
Sbjct: 251 GLEKI--IAQRGKGSGIGFGAEVKDPDARGVGE----------------LFKELEPEDLL 292

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++
Sbjct: 293 K-FGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+A  A+   +     GAR L+++ME +L D  F    L
Sbjct: 352 TAIAKRAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|261392354|emb|CAX49892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis 8013]
          Length = 414

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRRRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E++
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|92114167|ref|YP_574095.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|122419775|sp|Q1QVW2|CLPX_CHRSD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91797257|gb|ABE59396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chromohalobacter salexigens DSM 3043]
          Length = 426

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 179/413 (43%), Gaps = 79/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PREI + LD Y+IGQ  AKR +++A+ N ++R +      D EL   NILL+GPTG GKT
Sbjct: 68  PREIRNTLDDYVIGQDRAKRVLSVAVYNHYKRLRADVKSEDVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 128 LLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +      IE    S              
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALLKL----IEGTTASIPPQGGRKHPQQEF 236

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
             ++ S +                V   +  L +   DR              VE  GI 
Sbjct: 237 LQVDTSNML-------------FIVGGAFAGLEKVIRDR--------------VEKGGIG 269

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F  E   + ++DS   +G    GV+ + L          K+G                  
Sbjct: 270 FNAE---VKSKDSEKAMGDILAGVEPEDL---------VKFG------------------ 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     ILT+ +++LI QY  L   EG+ L+F ED++
Sbjct: 300 ----LIPEFVGRVPVIATLTELSEEALIQILTEPKNSLIKQYVHLFAMEGVELEFREDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+A  A+  N+     GAR L++++E VL D  +    L++ T VVIDA  +
Sbjct: 356 RAVAHKAMARNT-----GARGLRSILESVLLDTMYEVPSLEDVTKVVIDASVI 403


>gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 412

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 170/414 (41%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDTEKAEQGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 180 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  V    I  +     
Sbjct: 225 ---------------------RKHPQQE---------------MLKVDTSKILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L   DKI+ + +    G+   G    +    E  ++S  +  +  D ++         
Sbjct: 249 AGL---DKIIGKRTQTDTGI---GFDAKVEKEEEKENLSELFRQVEPDDLMKF------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ L  QY+ L   E + L+FT ++
Sbjct: 296 ----GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E VL D  +    ++  K V++D E +
Sbjct: 352 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLKKVIVDEETI 400


>gi|254805167|ref|YP_003083388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
 gi|254668709|emb|CBA06486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha14]
          Length = 414

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRRRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|254448887|ref|ZP_05062343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
 gi|198261577|gb|EDY85866.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
          Length = 426

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 169/420 (40%), Gaps = 89/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 67  TPHEIKQRLDDYVIGQERAKKVLSVAVYNHYKRMESSQRNDEIELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKVSRKADNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   +I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVDTSNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG + E                     + T+          H 
Sbjct: 253 AGLDKV--IRERSEKGGIGFAAE---------------------VKTEEDDLAIGQLLHE 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L +     ILT  ++ +I Q+K L + EG+ ++
Sbjct: 290 VEPEDLVKYGLIPEFIGRLPVVATLEELGEEALIEILTQPKNAIIKQFKYLFEMEGVEIE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F + ++ A+A  A+   +     GAR L+T++E +L D  +    ++    VVID   +R
Sbjct: 350 FLDAALSAIAQKAMERKT-----GARGLRTILENILLDTMYEVPSMESVSKVVIDDAVIR 404


>gi|149192522|ref|ZP_01870700.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
 gi|148833642|gb|EDL50701.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1]
          Length = 417

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 163/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I + LD Y+IGQ  AK+ +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 58  TPRDIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 118 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  I                  
Sbjct: 176 -----IDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGG---------- 220

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 221 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 243

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  D+ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 244 FAGLDKVIDQRVATGTGIGFGAEVRSKD-------ETKTVGELFTQVEPEDLV------- 289

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L   EG+ L+F E
Sbjct: 290 ----KYGLIPEFIGRLPVTTTLTELDEDALIQILNEPKNALTKQYGALFDLEGVELEFRE 345

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 346 DALRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSKVVIDESVIN 397


>gi|281177609|dbj|BAI53939.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE15]
          Length = 424

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/423 (25%), Positives = 172/423 (40%), Gaps = 80/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   I  R ++G+GIG               G++V  K           +A     
Sbjct: 252 AGLDKV--IANRVETGSGIGF--------------GATVKAKSD--KASEGELLAQVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +     
Sbjct: 354 ALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSK 408

Query: 425 DFP 427
              
Sbjct: 409 PLL 411


>gi|255030307|ref|ZP_05302258.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes LO28]
          Length = 240

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 167/240 (69%)

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
             M   +KKK +++V++    L  DE+ +LID D +  + I   E  G++F+DE DKI +
Sbjct: 1   SGMFPAKKKKRKVTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIAS 60

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317
           ++ G    VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+Q
Sbjct: 61  KEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQ 120

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GRFP+R+ L  L + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  +
Sbjct: 121 GRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQV 180

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           N    +IGARRL T++E++LED+ F A ++  +++ +   YV   +       D+  FIL
Sbjct: 181 NQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 240


>gi|290969193|ref|ZP_06560718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780699|gb|EFD93302.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 410

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/416 (23%), Positives = 175/416 (42%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R Q   D  D EL   N+++VGPTG GK
Sbjct: 61  TPHEIKATLDEYVIGQEAAKKTLAVAVYNHYKRLQSNTDADDVELQKSNVVMVGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE  +  L+  A   + +++R  +    
Sbjct: 121 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENCLLKLIQAADYDIEKAQRGII---- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 177 ----------------------------------YIDEID-KISRKSENPSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V G   +   +   Q                M  +   +I  +     
Sbjct: 202 VQQALLKILEGTVAGVPPQGGRKHPHQD---------------MLQIDTTNILFICGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D  DK + +   +        VQ      ++  ++      ++              
Sbjct: 247 ---DGIDKTIQKRISDKKMGFGADVQSKSKKALK--TLLKDIIPVD-------------- 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV V L  L++     ILT+ ++ L+ QY++++K + + L FT D+
Sbjct: 288 LQKFGLIPELIGRLPVLVTLDPLDEEAMVHILTEPKNALVKQYQKMLKMDDVELKFTSDA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +  +A  A+  N+     GAR L++++ER++ D+ F     ++ +  +++   V  
Sbjct: 348 LQEIAKEALRRNT-----GARGLRSIIERIMLDVMFDVPSRKDVEKCIVNKSCVTE 398


>gi|255551247|ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223544165|gb|EEF45689.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 565

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 176/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R    +                  +   
Sbjct: 148 TPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHDSIQKWSAGDSGNNKAEAMDEDGV 207

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 208 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMA 267

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D                             +++ 
Sbjct: 268 ADYNVAAAQQGIVY-----------ID-----------------------------EVDK 287

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 288 ITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG--------------- 332

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG          +  V  ++V     
Sbjct: 333 -DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRMGSVTSAAV----- 386

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L        +S    L+PE  GRFPV V L +L ++    +LT+ ++ L  QY
Sbjct: 387 ---TSSLLETVESGDLIS--YGLIPEFVGRFPVLVSLSALTENQLVQVLTEPKNALGKQY 441

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K++ +  G+ L FTE+++  +A  A+  N+     GAR L+ ++E +L D  +   D++ 
Sbjct: 442 KKMFQMNGVRLHFTENALRLIAKKAITKNT-----GARGLRAILENILMDAMYEIPDVKT 496

Query: 410 KTVVIDAEYVRL 421
              +IDA  V  
Sbjct: 497 GEDIIDAVVVDE 508


>gi|222085565|ref|YP_002544095.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 470

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 113 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 172

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 173 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 228

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 229 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 253

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 254 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 298

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V    G  +      +       
Sbjct: 299 AGLDKI--ISARGEKTSIGF--------------GAAVK---GPDDRRVGEVLRELEPED 339

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L+F ED+
Sbjct: 340 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDA 399

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 400 LREIARRAIVRKT-----GARGLRSIMEKILLDTMFDLPALEGVREVVISEEVVR 449


>gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
 gi|123128702|sp|Q0C0G0|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas
           neptunium ATCC 15444]
          Length = 420

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 169/421 (40%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ+ AKR +++A+ N ++R          EL   NILLVGPTG GK
Sbjct: 66  TPQEICDVLDDYVIGQRYAKRILSVAVHNHYKRLSHAGKTDGVELSKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQRGIV---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 182 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 207 VQQALLKIMEGTVAAVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG          +   E   V      +  + +          
Sbjct: 252 AGLEKI--IAARGENASIGFG------ATIKSGEERGVGDTLREVEPEDL---------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L   E + L FT ++
Sbjct: 294 -QKFGLIPEFIGRLPVLATLEDLDEKALIQILTQPKNALLKQYQRLFDMESVQLTFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L+++ME +L D  F   +L+  + VVI+AE V  +   
Sbjct: 353 LVAVARRAITRKT-----GARGLRSIMESILLDTMFELPNLRGVEEVVINAEVVDGNAEP 407

Query: 426 F 426
            
Sbjct: 408 L 408


>gi|120554757|ref|YP_959108.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
 gi|166214783|sp|A1U1Q2|CLPX_MARAV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120324606|gb|ABM18921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinobacter
           aquaeolei VT8]
          Length = 427

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 168/415 (40%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRETLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKSDVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   +I  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVDTGNILFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R   + IG S     +D      G  +      + T+ ++         
Sbjct: 255 AGLDKV--IQERSERSSIGFSATVKSQDDSK-STGDII----REVETEDLVKF------- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY++L   EG+ LDF ED+
Sbjct: 301 ----GLIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L+++ME  L D  +      +   VVID   ++
Sbjct: 357 LRAVARKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVIDESVIK 406


>gi|295096775|emb|CBK85865.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 424

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 168/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +  S R                    
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHR-------------------- 261

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                    V   SG G G + +            + V  +      D I F        
Sbjct: 262 ---------VETGSGIGFGATVKATSEKPNEGQLLAQVEPE------DLIKF-------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|270263571|ref|ZP_06191840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
 gi|270042455|gb|EFA15550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
          Length = 423

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 161/414 (38%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIGQRVNTGSGI--------------GFGATVKGESEKATEGELLLQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++A+A  A+   +     GAR L++++E  L D  +    +     VVID   +
Sbjct: 355 LNAIAKKAMTRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVI 403


>gi|260460896|ref|ZP_05809146.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|259033473|gb|EEW34734.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           opportunistum WSM2075]
 gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 424

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 168/419 (40%), Gaps = 90/419 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R     IG                      +G++            F +
Sbjct: 253 AGLDKI--ISDRGRKTSIG----------------------FGAVVASPEDRRTGDVFRL 288

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L 
Sbjct: 289 VEPEDLLKFGLIPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLT 348

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           F E+++ A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 349 FHENALSAIAKRAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402


>gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
 gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii A2-165]
          Length = 439

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/422 (25%), Positives = 177/422 (41%), Gaps = 93/422 (22%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 81  LTPAEIKNGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGK 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   V++++   +    
Sbjct: 141 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLLQAADFDVQKAQVGII---- 196

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S + S     GG  
Sbjct: 197 ----------------------------------YIDEID-KITRKSENPSITRDVGGEG 221

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V         +                     + +  D+  ++   G 
Sbjct: 222 VQQALLKILEGTVSNVPPNGGRKHP-----------------QQEFIQIDTTNILFICGG 264

Query: 247 VFLDEFDK-IVARDSGNGIGV------SREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            F D  DK I+ R   + +G       + E  QR LL  VE   +  K+G          
Sbjct: 265 AF-DGLDKYILRRTDRSALGFGSSLKDNSEDAQRALLRKVEPHDM-VKFG---------- 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + 
Sbjct: 313 ------------LIPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDSVE 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L+FT++++ A+A   +   +     GAR L++VME +L  + +    D     V ID + 
Sbjct: 361 LEFTDEALHAIARKTIERKT-----GARGLRSVMEGILLPVMYDVPNDPTIIRVTIDKDT 415

Query: 419 VR 420
           V 
Sbjct: 416 VE 417


>gi|110680062|ref|YP_683069.1| ATP-dependent protease ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
 gi|123361806|sp|Q165G0|CLPX_ROSDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|109456178|gb|ABG32383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           denitrificans OCh 114]
          Length = 421

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 170/429 (39%), Gaps = 80/429 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+ +G   +    D   +          G I TD            
Sbjct: 251 AGLDKI--IAARGKGSAMGFGADVRGNDDRGV----------GEIFTDL-------EPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E +L D  F    L+  T VV++ E V      
Sbjct: 352 LSAIAKRAIERKT-----GARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAP 406

Query: 426 FPSETDMYH 434
                D   
Sbjct: 407 LMIHADASK 415


>gi|325136470|gb|EGC59076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M0579]
          Length = 414

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 180/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + V+  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENADVTKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 422

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 166/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPQEIIAVLDDYVIGQSFAKKVLSVAVHNHYKRLAHAAKSNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  +                   
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +         I       +  L +      I  D   + SI    N   
Sbjct: 227 ------RKHPQQEFLQVDTANILFICGGAFAGLDK------IISDRGRKTSIGFAAN--- 271

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                   +   D      V R+    DLL                              
Sbjct: 272 --------VAGPDDRRTGDVFRQVEPEDLLKF---------------------------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    IL + ++ L+ QY+ L + E + L F ED+
Sbjct: 296 ----GLIPEFVGRLPVLATLEDLDEAALVQILEEPKNALVKQYQRLFEMENVELSFHEDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  + + 
Sbjct: 352 LRAIARKAIERKT-----GARGLRSIMEAMLLDTMFDLPTLEGVQEVVISEDVID 401


>gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           BTAi1]
 gi|166214758|sp|A5EKA7|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium
           sp. BTAi1]
          Length = 424

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 SGLEKI--ISARGRSTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 401


>gi|283784264|ref|YP_003364129.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
 gi|282947718|emb|CBG87273.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
          Length = 424

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 168/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    L++ + VVID   +
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLEDVEKVVIDESVI 403


>gi|320178280|gb|EFW53254.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           boydii ATCC 9905]
          Length = 424

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|332085738|gb|EGI90902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 155-74]
          Length = 424

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|114569889|ref|YP_756569.1| ATP-dependent protease ATP-binding subunit ClpX [Maricaulis maris
           MCS10]
 gi|122316140|sp|Q0AQ06|CLPX_MARMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114340351|gb|ABI65631.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Maricaulis
           maris MCS10]
          Length = 423

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 175/421 (41%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI + L+ Y+IGQ  AKR +A+A+ N ++R    +   D EL   NILL+GPTG GK
Sbjct: 67  SPQEIFNVLNDYVIGQAHAKRVLAVAVHNHYKRLNHASQNSDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 127 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  V     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFVVGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G+ IG   +  + D     E          +  D +L         
Sbjct: 253 AGLDKV--ISQRGQGSSIGFGADVREPDARRTGEI------LREVEPDDLL--------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L + EG+ L FTED+
Sbjct: 296 --RFGLIPEFVGRLPVIATLEDLDIGALVQILTEPKNALVKQYQRLFEMEGVGLTFTEDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A+ A+   +     GAR L+++ME +L +  F    L+  + +V++ E V  +   
Sbjct: 354 LKAIANRAIARKT-----GARGLRSIMEGILLETMFDLPSLEGVEEIVVNGEVVDGNAKP 408

Query: 426 F 426
            
Sbjct: 409 L 409


>gi|157146945|ref|YP_001454264.1| ATP-dependent protease ATP-binding subunit ClpX [Citrobacter koseri
           ATCC BAA-895]
 gi|166214770|sp|A8AK15|CLPX_CITK8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157084150|gb|ABV13828.1| hypothetical protein CKO_02722 [Citrobacter koseri ATCC BAA-895]
          Length = 424

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   I  R ++G+GIG               G++V  K           +A     
Sbjct: 252 AGLDKV--IANRVETGSGIGF--------------GATVKAKSD--KASEGELLAQVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 354 ALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|262276277|ref|ZP_06054086.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
 gi|262220085|gb|EEY71401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia
           hollisae CIP 101886]
          Length = 426

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 170/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  I                  
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTIASVPPQGG---------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L     D+++D         ++ +  G
Sbjct: 230 -------RKHPQQEFLQVDTSKILFICGGAFAGL-----DKVVDQ--------RVAKGSG 269

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           I F  E                +E    DL   VE   +  KYG                
Sbjct: 270 IGFGAEV-----------RSKDQEASLSDLFSKVEPEDL-VKYG---------------- 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY  L++ +G+ L+F +D
Sbjct: 302 ------LIPEFIGRLPVTAILGELDEDALVQILREPKNALTKQYAALLELDGVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     +  T VVID   ++
Sbjct: 356 ALTAIAKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSSKGVTKVVIDESVIK 406


>gi|15800168|ref|NP_286180.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 EDL933]
 gi|15829746|ref|NP_308519.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128423|ref|NP_414972.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|24111822|ref|NP_706332.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 301]
 gi|26246449|ref|NP_752488.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           CFT073]
 gi|30061940|ref|NP_836111.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 2457T]
 gi|74311013|ref|YP_309432.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sonnei
           Ss046]
 gi|82775655|ref|YP_402002.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella
           dysenteriae Sd197]
 gi|89107308|ref|AP_001088.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. W3110]
 gi|91209512|ref|YP_539498.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UTI89]
 gi|110640699|ref|YP_668427.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           536]
 gi|110804466|ref|YP_687986.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           5 str. 8401]
 gi|117622698|ref|YP_851611.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|157157655|ref|YP_001461625.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           E24377A]
 gi|157159965|ref|YP_001457283.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           HS]
 gi|168754543|ref|ZP_02779550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768393|ref|ZP_02793400.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778931|ref|ZP_02803938.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786289|ref|ZP_02811296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|170021189|ref|YP_001726143.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ATCC 8739]
 gi|170080024|ref|YP_001729344.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170682782|ref|YP_001742582.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SMS-3-5]
 gi|187730793|ref|YP_001879149.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           CDC 3083-94]
 gi|188492973|ref|ZP_03000243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|193064164|ref|ZP_03045248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208807403|ref|ZP_03249740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814875|ref|ZP_03256054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822907|ref|ZP_03263225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398902|ref|YP_002269085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917655|ref|YP_002291739.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SE11]
 gi|215485519|ref|YP_002327950.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325849|ref|ZP_03441933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218553005|ref|YP_002385918.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI1]
 gi|218557348|ref|YP_002390261.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           S88]
 gi|218688302|ref|YP_002396514.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ED1a]
 gi|218693901|ref|YP_002401568.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           55989]
 gi|218698650|ref|YP_002406279.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI39]
 gi|218703722|ref|YP_002411241.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UMN026]
 gi|227884551|ref|ZP_04002356.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|237707567|ref|ZP_04538048.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|238899726|ref|YP_002925522.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|253774573|ref|YP_003037404.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160507|ref|YP_003043615.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli B
           str. REL606]
 gi|254791622|ref|YP_003076459.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020410|ref|ZP_05434275.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sp. D9]
 gi|256023943|ref|ZP_05437808.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia sp.
           4_1_40B]
 gi|260842639|ref|YP_003220417.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|260853661|ref|YP_003227552.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|260866599|ref|YP_003233001.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|261223921|ref|ZP_05938202.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256365|ref|ZP_05948898.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK966]
 gi|291281345|ref|YP_003498163.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|293403559|ref|ZP_06647650.1| ClpX [Escherichia coli FVEC1412]
 gi|293408588|ref|ZP_06652427.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|293413693|ref|ZP_06656342.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|293418509|ref|ZP_06660944.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|298379171|ref|ZP_06989052.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|300818230|ref|ZP_07098441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300820316|ref|ZP_07100468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300900509|ref|ZP_07118676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300903294|ref|ZP_07121222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300918179|ref|ZP_07134786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300924165|ref|ZP_07140157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300937055|ref|ZP_07151921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300947909|ref|ZP_07162057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300958006|ref|ZP_07170170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300988007|ref|ZP_07178487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300997373|ref|ZP_07181713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|301022568|ref|ZP_07186440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|301025666|ref|ZP_07189184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|301301589|ref|ZP_07207724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301647364|ref|ZP_07247176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|306813094|ref|ZP_07447287.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|307137083|ref|ZP_07496439.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           H736]
 gi|307312184|ref|ZP_07591820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|309787030|ref|ZP_07681642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309794829|ref|ZP_07689250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|312964537|ref|ZP_07778793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312970534|ref|ZP_07784715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|331640958|ref|ZP_08342093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331645614|ref|ZP_08346718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331651376|ref|ZP_08352401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331656495|ref|ZP_08357457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331661819|ref|ZP_08362742.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331666793|ref|ZP_08367667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331671985|ref|ZP_08372781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331676110|ref|ZP_08376822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331681833|ref|ZP_08382466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332281589|ref|ZP_08394002.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|62288037|sp|P0A6H1|CLPX_ECOLI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288038|sp|P0A6H2|CLPX_ECOL6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288039|sp|P0A6H3|CLPX_ECO57 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288040|sp|P0A6H4|CLPX_SHIFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122424751|sp|Q1RF97|CLPX_ECOUT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122957619|sp|Q0T7E5|CLPX_SHIF8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123049431|sp|Q0TKK3|CLPX_ECOL5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123563420|sp|Q32JJ4|CLPX_SHIDS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123617887|sp|Q3Z4W5|CLPX_SHISS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214775|sp|A1A8A7|CLPX_ECOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009013|sp|A7ZIJ6|CLPX_ECO24 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009014|sp|A7ZX96|CLPX_ECOHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044134|sp|B1J010|CLPX_ECOLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706586|sp|B7MD97|CLPX_ECO45 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706587|sp|B7NJ56|CLPX_ECO7I RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706588|sp|B7M3T1|CLPX_ECO8A RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706589|sp|B7N8Z2|CLPX_ECOLU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706590|sp|B1LJJ5|CLPX_ECOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229889854|sp|B1XFM6|CLPX_ECODH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066655|sp|B5Z3U5|CLPX_ECO5E RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066656|sp|B6HZP5|CLPX_ECOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689516|sp|B2U4P3|CLPX_SHIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763846|sp|B7UJR1|CLPX_ECO27 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763847|sp|B7L675|CLPX_ECO55 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763848|sp|B7MQF4|CLPX_ECO81 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491256|sp|C4ZTJ5|CLPX_ECOBW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12513300|gb|AAG54788.1|AE005223_3 ATP-dependent specificity component of clpP serine protease,
           chaperone [Escherichia coli O157:H7 str. EDL933]
 gi|26106847|gb|AAN79032.1|AE016756_215 ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli CFT073]
 gi|347729|gb|AAA16116.1| ATP-dependent protease ATPase subunit [Escherichia coli]
 gi|1773122|gb|AAB40194.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786642|gb|AAC73541.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|13359949|dbj|BAB33915.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli O157:H7 str. Sakai]
 gi|24050613|gb|AAN42039.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 301]
 gi|30040184|gb|AAP15917.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 2457T]
 gi|73854490|gb|AAZ87197.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Shigella sonnei Ss046]
 gi|81239803|gb|ABB60513.1| ATP-dependent specificity component of clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|85674578|dbj|BAE76218.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K12 substr. W3110]
 gi|91071086|gb|ABE05967.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Escherichia coli UTI89]
 gi|110342291|gb|ABG68528.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli 536]
 gi|110614014|gb|ABF02681.1| ATP-dependent protease ATP-binding subunit protease [Shigella
           flexneri 5 str. 8401]
 gi|115511822|gb|ABI99896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli APEC O1]
 gi|157065645|gb|ABV04900.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli HS]
 gi|157079685|gb|ABV19393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E24377A]
 gi|169756117|gb|ACA78816.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli ATCC 8739]
 gi|169887859|gb|ACB01566.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170520500|gb|ACB18678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli SMS-3-5]
 gi|187427785|gb|ACD07059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii CDC 3083-94]
 gi|188488172|gb|EDU63275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|189002703|gb|EDU71689.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357986|gb|EDU76405.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362383|gb|EDU80802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373571|gb|EDU91987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|192929193|gb|EDV82803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208727204|gb|EDZ76805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208731523|gb|EDZ80211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737100|gb|EDZ84784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209160302|gb|ACI37735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209743844|gb|ACI70229.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743846|gb|ACI70230.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743848|gb|ACI70231.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743850|gb|ACI70232.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743852|gb|ACI70233.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209910914|dbj|BAG75988.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE11]
 gi|215263591|emb|CAS07921.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O127:H6 str. E2348/69]
 gi|217322070|gb|EEC30494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350633|emb|CAU96325.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli 55989]
 gi|218359773|emb|CAQ97314.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI1]
 gi|218364117|emb|CAR01782.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli S88]
 gi|218368636|emb|CAR16375.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI39]
 gi|218425866|emb|CAR06672.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli ED1a]
 gi|218430819|emb|CAR11693.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli UMN026]
 gi|222032233|emb|CAP74972.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli LF82]
 gi|226898777|gb|EEH85036.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|227838637|gb|EEJ49103.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|238860036|gb|ACR62034.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|242376219|emb|CAQ30910.1| clpX, subunit of ClpX ATP-dependent protease specificity component
           and chaperone, ClpXP and ClpAXP [Escherichia coli
           BL21(DE3)]
 gi|253325617|gb|ACT30219.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972408|gb|ACT38079.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str.
           REL606]
 gi|253976618|gb|ACT42288.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           BL21(DE3)]
 gi|254591022|gb|ACT70383.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. TW14359]
 gi|257752310|dbj|BAI23812.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|257757786|dbj|BAI29283.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|257762955|dbj|BAI34450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|260450375|gb|ACX40797.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|281599778|gb|ADA72762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Shigella
           flexneri 2002017]
 gi|284920248|emb|CBG33307.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           042]
 gi|290761218|gb|ADD55179.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|291325037|gb|EFE64452.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|291429412|gb|EFF02432.1| ClpX [Escherichia coli FVEC1412]
 gi|291433751|gb|EFF06724.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|291464929|gb|ADE05991.1| ATP-dependent protease ClpX [Escherichia coli]
 gi|291471766|gb|EFF14249.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|294493190|gb|ADE91946.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli IHE3034]
 gi|298280284|gb|EFI21788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|299880020|gb|EFI88231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|300304192|gb|EFJ58712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|300315273|gb|EFJ65057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300355990|gb|EFJ71860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300397449|gb|EFJ80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|300404589|gb|EFJ88127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300407559|gb|EFJ91097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300414630|gb|EFJ97940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300419618|gb|EFK02929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300452509|gb|EFK16129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300457886|gb|EFK21379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300527101|gb|EFK48170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300529121|gb|EFK50183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300843086|gb|EFK70846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301074509|gb|EFK89315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|305853857|gb|EFM54296.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|306907686|gb|EFN38188.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|307552345|gb|ADN45120.1| ATP-dependent specificity component of ClpP serine protease
           [Escherichia coli ABU 83972]
 gi|307628092|gb|ADN72396.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UM146]
 gi|308121482|gb|EFO58744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|308924608|gb|EFP70103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309700699|emb|CBI99995.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ETEC H10407]
 gi|310337183|gb|EFQ02321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|312290771|gb|EFR18648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312945016|gb|ADR25843.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646935|gb|EFS11392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2a str. 2457T]
 gi|315059718|gb|ADT74045.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli W]
 gi|315135120|dbj|BAJ42279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|315256266|gb|EFU36234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 85-1]
 gi|315289844|gb|EFU49234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 110-3]
 gi|315294228|gb|EFU53579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 153-1]
 gi|315299562|gb|EFU58810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 16-3]
 gi|315616621|gb|EFU97238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 3431]
 gi|320186068|gb|EFW60813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           flexneri CDC 796-83]
 gi|320192854|gb|EFW67494.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC1212]
 gi|320197088|gb|EFW71707.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli WV_060327]
 gi|320201682|gb|EFW76258.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli EC4100B]
 gi|320638433|gb|EFX08147.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. G5101]
 gi|320643814|gb|EFX12937.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. 493-89]
 gi|320649165|gb|EFX17743.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. H 2687]
 gi|320656058|gb|EFX23974.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661208|gb|EFX28639.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665184|gb|EFX32277.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153475|gb|EFZ39729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli EPECa14]
 gi|323160451|gb|EFZ46399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E128010]
 gi|323164239|gb|EFZ50046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           sonnei 53G]
 gi|323170524|gb|EFZ56174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli LT-68]
 gi|323178293|gb|EFZ63871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1180]
 gi|323184731|gb|EFZ70102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1357]
 gi|323191358|gb|EFZ76621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli RN587/1]
 gi|323379717|gb|ADX51985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli KO11]
 gi|323938624|gb|EGB34873.1| ATP-dependent Clp protease [Escherichia coli E1520]
 gi|323943245|gb|EGB39401.1| ATP-dependent Clp protease [Escherichia coli E482]
 gi|323945343|gb|EGB41399.1| ATP-dependent Clp protease [Escherichia coli H120]
 gi|323952950|gb|EGB48818.1| ATP-dependent Clp protease [Escherichia coli H252]
 gi|323958631|gb|EGB54334.1| ATP-dependent Clp protease [Escherichia coli H263]
 gi|323963428|gb|EGB58990.1| ATP-dependent Clp protease [Escherichia coli H489]
 gi|323965125|gb|EGB60584.1| ATP-dependent Clp protease [Escherichia coli M863]
 gi|323972292|gb|EGB67502.1| ATP-dependent Clp protease [Escherichia coli TA007]
 gi|323976077|gb|EGB71170.1| ATP-dependent Clp protease [Escherichia coli TW10509]
 gi|324010069|gb|EGB79288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 57-2]
 gi|324010652|gb|EGB79871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 60-1]
 gi|324016701|gb|EGB85920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 117-3]
 gi|324116926|gb|EGC10839.1| ATP-dependent Clp protease [Escherichia coli E1167]
 gi|326341202|gb|EGD64994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1044]
 gi|326346023|gb|EGD69762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1125]
 gi|327254766|gb|EGE66382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli STEC_7v]
 gi|330910232|gb|EGH38742.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli AA86]
 gi|331037756|gb|EGI09976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331045776|gb|EGI17902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331051117|gb|EGI23169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331054743|gb|EGI26752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331060241|gb|EGI32205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331066017|gb|EGI37901.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331070974|gb|EGI42333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331076168|gb|EGI47450.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331081035|gb|EGI52200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332094594|gb|EGI99640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 5216-82]
 gi|332098459|gb|EGJ03425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 3594-74]
 gi|332103941|gb|EGJ07287.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|332341802|gb|AEE55136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli UMNK88]
 gi|332760729|gb|EGJ91017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 4343-70]
 gi|332761521|gb|EGJ91803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2747-71]
 gi|332763736|gb|EGJ93974.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-671]
 gi|332768359|gb|EGJ98543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2930-71]
 gi|333007845|gb|EGK27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-218]
 gi|333008124|gb|EGK27599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri VA-6]
 gi|333010899|gb|EGK30325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-272]
 gi|333020700|gb|EGK39960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-227]
 gi|333021843|gb|EGK41091.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-304]
          Length = 424

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
 gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
          Length = 433

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 169/417 (40%), Gaps = 79/417 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 65  MKPKEIKAFLDDYVIGQDNAKKVLSVAVYNHYKRITSRKKMDVDVQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 125 TYLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGII---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 181 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  ++  +I  +     
Sbjct: 206 VQQALLKILEGTVASVPPQGGRKHPHQELL---------------QINTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R S   IG + E V ++                  TD    +       
Sbjct: 251 DGLEKI--IERRLSAGSIGFNAEIVDKN-----------------KTDIDDLLKKTLPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+ V L+ L++     ILT+ ++ L+ QY++L + + + L+ T ++
Sbjct: 292 LVKFGLIPEFIGRVPITVSLELLDREALVKILTEPKNALVKQYQKLFELDDVKLELTREA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ +A++AV   +     GAR L+++ME V+ ++ +    D       I  + V   
Sbjct: 352 VERIAELAVERKT-----GARGLRSIMESVMMELMYEIPSDSSIGICTITKDVVDKK 403


>gi|170767649|ref|ZP_02902102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
 gi|170123137|gb|EDS92068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
          Length = 424

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIEGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|224824982|ref|ZP_03698088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella
           nitroferrum 2002]
 gi|224602653|gb|EEG08830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella
           nitroferrum 2002]
          Length = 424

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 176/417 (42%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI S+LD+YIIGQ  AK+ +++A+ N ++R   P D  D EL   NILL+GPTG GK
Sbjct: 68  TPQEIRSDLDQYIIGQDIAKKTLSVAVYNHYKRLYTPTDKDDVELAKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLLQKCDYDVEKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASIPPQGG--------- 229

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + +  D+  ++   G 
Sbjct: 230 ---------------------RKHP-----------------NQEFIQVDTTNILFICGG 251

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R    GIG   E   +D          S      + +    I  G   
Sbjct: 252 AF-DGLEKIIRRRSEKGGIGFGAEVSSKDESK-------SISVLFKDVEPGDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     ILT  ++ L+ QY+ L   EG+ L+    
Sbjct: 301 ------LIPELIGRLPVVATLEELDEEALVTILTQPKNALVKQYQRLFSLEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ++  +A  A+   +     GAR L++++ER L D  +    +     VV+D + +  
Sbjct: 355 ALRVIAKQALVRKT-----GARGLRSILERALLDTMYELPSMDNVSRVVVDEKVIEK 406


>gi|254492062|ref|ZP_05105238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxidans DMS010]
 gi|224462726|gb|EEF78999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga
           thiooxydans DMS010]
          Length = 423

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 168/432 (38%), Gaps = 83/432 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ+ AKR +++A+ N ++R +    D   EL   NILL+GPTG GK
Sbjct: 65  TPREINEALDNYVIGQEKAKRYLSVAVYNHYKRLRSGHKDDGVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++    V    
Sbjct: 125 TLLAETLARQLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAETGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 227 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG S +    D    +  S  + +           I  G    
Sbjct: 251 AGLDKV--IRNRTHKGGIGFSADVKSLDEQRPLSESLRTVE-------PEDLIQYG---- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    ILT+ ++ L  QY+ L   EG  L+F +D+
Sbjct: 298 -----LIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQYQRLFDMEGADLEFRDDA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  F    L     VVID   +      
Sbjct: 353 LSAIARKAMERKT-----GARGLRSIIENVLLDTMFDLPSLDNISKVVIDESVIGGENTP 407

Query: 426 FP----SETDMY 433
                   TD+ 
Sbjct: 408 ILIYEDQNTDLA 419


>gi|16763830|ref|NP_459445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56414395|ref|YP_151470.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179061|ref|YP_215478.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615357|ref|YP_001589321.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167990433|ref|ZP_02571533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231438|ref|ZP_02656496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237564|ref|ZP_02662622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261114|ref|ZP_02683087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465543|ref|ZP_02699425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818939|ref|ZP_02830939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445635|ref|YP_002039692.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194451482|ref|YP_002044484.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471272|ref|ZP_03077256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734820|ref|YP_002113480.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197250772|ref|YP_002145430.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263118|ref|ZP_03163192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363315|ref|YP_002142952.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198242558|ref|YP_002214403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390026|ref|ZP_03216637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205351760|ref|YP_002225561.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|224582287|ref|YP_002636085.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238911420|ref|ZP_04655257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|21263472|sp|Q8ZRC0|CLPX_SALTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81309773|sp|Q57SB4|CLPX_SALCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81360133|sp|Q5PFN5|CLPX_SALPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044148|sp|A9MWX5|CLPX_SALPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689941|sp|B5BD82|CLPX_SALPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690000|sp|B5EXI9|CLPX_SALA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690231|sp|B4T9E4|CLPX_SALHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690324|sp|B5FKV4|CLPX_SALDC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690478|sp|B5R6V0|CLPX_SALG2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690697|sp|B4TMC7|CLPX_SALSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693543|sp|B4SWU2|CLPX_SALNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763861|sp|C0Q7X4|CLPX_SALPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16418956|gb|AAL19404.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128652|gb|AAV78158.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62126694|gb|AAX64397.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364721|gb|ABX68489.1| hypothetical protein SPAB_03128 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404298|gb|ACF64520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409786|gb|ACF70005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457636|gb|EDX46475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710322|gb|ACF89543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631578|gb|EDX50098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094792|emb|CAR60325.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214475|gb|ACH51872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241373|gb|EDY23993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289504|gb|EDY28867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937074|gb|ACH74407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602471|gb|EDZ01017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205271541|emb|CAR36359.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330906|gb|EDZ17670.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333989|gb|EDZ20753.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344101|gb|EDZ30865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349962|gb|EDZ36593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224466814|gb|ACN44644.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261245732|emb|CBG23529.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992165|gb|ACY87050.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157060|emb|CBW16544.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911482|dbj|BAJ35456.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084723|emb|CBY94514.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226027|gb|EFX51078.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614727|gb|EFY11656.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618833|gb|EFY15721.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623540|gb|EFY20379.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629161|gb|EFY25940.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631882|gb|EFY28636.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637381|gb|EFY34083.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642066|gb|EFY38676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647885|gb|EFY44360.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652563|gb|EFY48917.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653275|gb|EFY49608.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660576|gb|EFY56812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664728|gb|EFY60921.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669219|gb|EFY65369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670764|gb|EFY66897.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678997|gb|EFY75052.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682026|gb|EFY78051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685145|gb|EFY81142.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713522|gb|EFZ05093.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128769|gb|ADX16199.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192961|gb|EFZ78184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196957|gb|EFZ82099.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203942|gb|EFZ88959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206973|gb|EFZ91926.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214176|gb|EFZ98934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214500|gb|EFZ99251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223057|gb|EGA07400.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227006|gb|EGA11187.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230176|gb|EGA14296.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233914|gb|EGA18003.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238392|gb|EGA22450.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244079|gb|EGA28088.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246240|gb|EGA30223.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251866|gb|EGA35729.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257863|gb|EGA41542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261124|gb|EGA44716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264946|gb|EGA48445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272509|gb|EGA55916.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622152|gb|EGE28497.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626795|gb|EGE33138.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987398|gb|AEF06381.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 423

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 168/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|320173742|gb|EFW48925.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           dysenteriae CDC 74-1112]
          Length = 424

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVINGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|237730415|ref|ZP_04560896.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|283834243|ref|ZP_06353984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
 gi|226905954|gb|EEH91872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|291069763|gb|EFE07872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
          Length = 424

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 168/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAQSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 299 ----GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|325130451|gb|EGC53212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis OX99.30304]
          Length = 414

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|309378864|emb|CBX22569.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 414

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|194098830|ref|YP_002001893.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934120|gb|ACF29944.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           NCCP11945]
          Length = 442

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 210

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 211 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 255

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 256 ---------------------RKHP-----------------NQEFINVDTANILFICGG 277

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 278 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 325

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 326 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 382 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 432


>gi|77463764|ref|YP_353268.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter
           sphaeroides 2.4.1]
 gi|123591634|sp|Q3J1G7|CLPX_RHOS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77388182|gb|ABA79367.1| ATP-dependent protease Clp, ATPase subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 421

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 162/400 (40%), Gaps = 78/400 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD Y+IGQ  AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V   +R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERVQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R  G+GIG   E    D   + E                LF       + 
Sbjct: 251 GLEKI--IAQRGKGSGIGFGAEVKDPDARGVGE----------------LFKELEPEDLP 292

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + EG+ L FT D++
Sbjct: 293 K-FGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
            A+A  A+   +     GAR L+++ME +L D  F    L
Sbjct: 352 TAIAKRAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386


>gi|313668518|ref|YP_004048802.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           ST-640]
 gi|313005980|emb|CBN87437.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica
           020-06]
          Length = 414

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGDNVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|269138348|ref|YP_003295048.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|267984008|gb|ACY83837.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|304558380|gb|ADM41044.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Edwardsiella
           tarda FL6-60]
          Length = 423

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 171/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+   G    +    + +S S   G +  + ++         
Sbjct: 255 ------DKVIGQRVNTGTGI---GFGAKVKGKADKASESELLGQVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E  L D  +    ++  + VV+D   +   
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVVDENVIDGQ 406


>gi|161870243|ref|YP_001599413.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis 053442]
 gi|189044141|sp|A9M020|CLPX_NEIM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161595796|gb|ABX73456.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis 053442]
          Length = 414

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKGDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|304387303|ref|ZP_07369496.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338686|gb|EFM04803.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 414

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKGDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
 gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
          Length = 433

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 168/416 (40%), Gaps = 79/416 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI S LD Y+IGQ  AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 65  MKPKEIKSFLDDYVIGQDSAKKVLSVAVYNHYKRITSRRSMDVDVQKSNILMLGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 125 TYVAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGII---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 181 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 206 VQQALLKILEGTVASVPPQGGRKHPHQELL---------------QIDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I +R S   IG + E V ++                  TD    +       
Sbjct: 251 DGLEKI--IESRLSAGSIGFNAEIVDKN-----------------RTDIDDLLKKVLPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L+ L+K     ILT+ ++ LI QY++L + + + L+ TE++
Sbjct: 292 LVKFGLIPEFIGRVPVTVSLELLDKEALVKILTEPKNALIKQYQKLFELDDVKLELTEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           ++ +A++AV   +     GAR L+++ME V+ DI +    D       I    V  
Sbjct: 352 VERIAELAVERKT-----GARGLRSIMESVMMDIMYEIPSDSNIGICTITKAVVNK 402


>gi|325198516|gb|ADY93972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis G2136]
          Length = 414

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKGDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|121635078|ref|YP_975323.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           FAM18]
 gi|166214793|sp|A1KUJ4|CLPX_NEIMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120866784|emb|CAM10537.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis FAM18]
 gi|325132435|gb|EGC55128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M6190]
 gi|325138423|gb|EGC60991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis ES14902]
 gi|325143447|gb|EGC65773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240013]
          Length = 414

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKGDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29142799|ref|NP_806141.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213160793|ref|ZP_03346503.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425857|ref|ZP_03358607.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213646004|ref|ZP_03376057.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289827299|ref|ZP_06545982.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|21263470|sp|Q8Z8V1|CLPX_SALTI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25296072|pir||AD0558 ATP-dependent clp protease ATP-binding chain ClpX [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501720|emb|CAD08908.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138431|gb|AAO70001.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 423

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++A+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LNAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|254672175|emb|CBA05020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha275]
          Length = 414

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|319410635|emb|CBY91004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           meningitidis WUE 2594]
          Length = 414

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|326501208|dbj|BAJ98835.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 173/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------ADLRD 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R                       +   
Sbjct: 223 TPKEISKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGCSDGEADGEDNV 282

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 283 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLSV 342

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V+ +++  V            +D                             +++ 
Sbjct: 343 ADFNVQAAQQGMVY-----------ID-----------------------------EVDK 362

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 363 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 407

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG             +  + V++   
Sbjct: 408 -DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRASMRTSGISSAQVTSSLL 466

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + +    IA G         L+PE  GRFP+ V L +LN+     +LT+ ++ L  Q+
Sbjct: 467 E-SVESGDLIAYG---------LIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQF 516

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L     + L FT+ ++  +A  A+  N+     GAR L+T++E +L D  +   D + 
Sbjct: 517 KKLFSMNNVKLHFTDAALRIIAQKAMCKNT-----GARGLRTILENILMDSMYEIPDTKS 571

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 572 GEKRIDAVVVDE 583


>gi|15677237|ref|NP_274390.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis
           MC58]
 gi|21263485|sp|Q9JYY3|CLPX_NEIMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7226618|gb|AAF41746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis MC58]
 gi|316984186|gb|EFV63164.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325134392|gb|EGC57037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M13399]
 gi|325140408|gb|EGC62929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis CU385]
 gi|325200007|gb|ADY95462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis H44/76]
 gi|325201919|gb|ADY97373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240149]
 gi|325205861|gb|ADZ01314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M04-240196]
 gi|325208330|gb|ADZ03782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis NZ-05/33]
          Length = 414

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|300930259|ref|ZP_07145672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
 gi|300461831|gb|EFK25324.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
          Length = 424

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPIVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|218549894|ref|YP_002383685.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ATCC 35469]
 gi|226706591|sp|B7LME1|CLPX_ESCF3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218357435|emb|CAQ90074.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia fergusonii ATCC 35469]
 gi|324114665|gb|EGC08633.1| ATP-dependent Clp protease [Escherichia fergusonii B253]
 gi|325498271|gb|EGC96130.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ECD227]
          Length = 424

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 166/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIEGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|104781014|ref|YP_607512.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           entomophila L48]
 gi|95110001|emb|CAK14706.1| ATP-dependent Clp protease ATP-binding subunit [Pseudomonas
           entomophila L48]
          Length = 442

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 82  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 141

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 142 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 199

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 200 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 244

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 245 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 267

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG S E     +    EG  V      +  D ++        
Sbjct: 268 FSGLEKV--IQNRSTKGGIGFSAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 314

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D
Sbjct: 315 -----GLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSD 369

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     +E   VVID   + 
Sbjct: 370 ALKAVARKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVIDESVIE 420


>gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42]
 gi|190891273|ref|YP_001977815.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli
           CIAT 652]
 gi|123512322|sp|Q2K9U6|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238692521|sp|B3PVY5|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
 gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
           etli CIAT 652]
 gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli
           CNPAF512]
          Length = 425

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 171/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    + +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V  +    +      +       
Sbjct: 254 AGLDKI--ISARGEKTSIGF--------------GATVKAQD---DRRVGEVLRELEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED+
Sbjct: 295 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 355 LREIARKAIVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|317164409|gb|ADV07950.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 442

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 94  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 210

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 211 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 255

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 256 ---------------------RKHP-----------------NQEFINVDTANILFICGG 277

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 278 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 325

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 326 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 381

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 382 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 432


>gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 420

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I++ LD Y+IGQ  AKR +++A+ N ++R        D E+   NILLVGPTG GK
Sbjct: 64  TPADILAVLDGYVIGQSRAKRVLSVAVHNHYKRLANAGRTGDVEISKSNILLVGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 124 TLLAQTLARMLDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  + + S      G  
Sbjct: 180 ----------------------------------YIDEVD-KISRKADNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+             + +DT    +I  +     
Sbjct: 205 VQQALLKIMEGTVASVPPQGGRKHPQQE------------FLQVDT---TNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  RD+G GIG   +    D   + E                  + S     
Sbjct: 250 AGLDKL--IAGRDTGAGIGFGADVRDPDDRKIGE-----------------LLGSLEPED 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ L+ QY++L + + + L+F +D+
Sbjct: 291 LIKFGLIPEFVGRLPVIATLEDLDEEALVRILTEPKNALVKQYEKLFEMDDVRLEFRDDA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           + A+A  A+   +     GAR L+++ME +L +  F        + VVI+ + V 
Sbjct: 351 LRAVAQKAIARKT-----GARGLRSIMENILMEPMFDIPTSGDIEEVVINGDVVE 400


>gi|161504374|ref|YP_001571486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189044147|sp|A9MM22|CLPX_SALAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160865721|gb|ABX22344.1| hypothetical protein SARI_02485 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 423

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRIHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 355 LDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 423

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 160/422 (37%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +      G+              G S   K  S        +A      
Sbjct: 255 ------DKVIGQRLNTSTGI--------------GFSAKVKGESEKATEGELLAQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F  ++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRSEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L D  +    ++    VV+D   V      
Sbjct: 355 LTAIAKKAMVRKT-----GARGLRSIVEGALLDTMYDLPSMENVGKVVVDESVVNGQSAP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|325204365|gb|ADY99818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis M01-240355]
          Length = 414

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 180/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           succinogenes 130Z]
 gi|171704241|sp|A6VME2|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Actinobacillus succinogenes 130Z]
          Length = 411

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 172/417 (41%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AK+ +A+AL N ++R +        EL   N+LL+GPTG GK
Sbjct: 63  TPHEIREHLDDYVIGQDYAKKVLAVALYNHYKRLRSGHKTDAVELSKSNVLLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II+ L+                   
Sbjct: 123 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENIIQKLLQNCDYDT------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++   S++ S      G  
Sbjct: 171 -EKAEQGII-------------------------YIDEID-KITRKSANPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q               DM  V    I  +     
Sbjct: 204 VQQALLKMIEGTIAAVPPQGGRKHPQQ---------------DMIRVDTSKILFICGGAF 248

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  +K V   SG G     +G Q +L       +++  +  I T+ ++        
Sbjct: 249 AGLDKIIEKRVHVGSGIGFNAEVKGEQDEL-------TLTDLFKQIETEDLIKF------ 295

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GR PV   L  L+++    ILT+ ++ L  QY+ L   E + L+FT +
Sbjct: 296 -----GMIPEFIGRLPVIAPLSELDENALISILTEPKNALTKQYQALFGLEDVELEFTPE 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           S+ A+A  A+   +     GAR L++++E +L D  +     +    V++D + +  
Sbjct: 351 SLKAMAKKALARKT-----GARGLRSIVEGILLDTMYDLPSQENLAKVIVDEDVIEK 402


>gi|261341039|ref|ZP_05968897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316904|gb|EFC55842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
          Length = 424

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 170/419 (40%), Gaps = 88/419 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G++V +     N   +L         
Sbjct: 255 ------DKVISHRVETGSGIGF------------GATVKSTSEKPNEGELL-------SQ 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+
Sbjct: 290 VEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           F ++++DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 350 FRDEALDAIAKKAMIRKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|226944448|ref|YP_002799521.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter
           vinelandii DJ]
 gi|226719375|gb|ACO78546.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Azotobacter
           vinelandii DJ]
          Length = 426

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/413 (25%), Positives = 170/413 (41%), Gaps = 79/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 68  PKEISTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V   +I  +      
Sbjct: 229 --------------------RKHPQQEFL---------------QVDTRNILFICGGAFS 253

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R +  GIG + E    D+     G  +      +  D ++          
Sbjct: 254 GLEKV--IQNRSTKGGIGFNAEVRSPDV-----GKKIGEALRDVEPDDLVKF-------- 298

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++
Sbjct: 299 ---GLIPEFVGRLPVIATLDELDEAALVQILTEPKNALTKQYGKLFEMEGVELEFRPDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+A  A+   +     GAR L++++E VL D  +          VVID   +
Sbjct: 356 RAVALRALERKT-----GARGLRSILEGVLLDTMYEIPSQSGVSKVVIDESVI 403


>gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 440

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 172/416 (41%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI   LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 82  LTPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGSDVELQKSNVLLLGPSGVGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   V++++   +    
Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQIGII---- 197

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S + S     GG  
Sbjct: 198 ----------------------------------YIDEID-KITRKSENPSITRDVGGEG 222

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 223 VQQALLKILEGTVSNVPPQGGRKHP-----------------QQEFIQIDTTNILFICGG 265

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  DK I+ R   + +G                   S K  S   +  L        
Sbjct: 266 AF-DGLDKYILRRTDKSALGFGS----------------SLKDNSSEAEKALLRKVEPHD 308

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + L+FT++
Sbjct: 309 LVK-FGLIPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELNFTDE 367

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++ A+A   +   +     GAR L++VME +L  I +    D     V +D + V 
Sbjct: 368 ALHAIARKTIERKT-----GARGLRSVMESILLPIMYEVPTDATIIRVTVDEDTVE 418


>gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
 gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
          Length = 415

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 172/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +++A+ N ++R +    DL  EL   NILL+GPTG GK
Sbjct: 68  TPHQIRAHLDDYVIGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE II+ L+                   
Sbjct: 128 TLLAQTLARQINVPFAIADATTLTEAGYVGEDVENIIQRLLQNCDYDT------------ 175

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++   S + S      G  
Sbjct: 176 -EKAEQGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+             +D   +       +   G 
Sbjct: 209 VQQALLKLIEGTIASVPPQGGRKHPQQEFLK----------VDTSKI-------LFICGG 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +    G+   G   ++    +   +   +  + T+ ++         
Sbjct: 252 AF-SGLDKIIEKRTHKDRGI---GFNANVQSKEKEHDIGELFAQVETEDLIKF------- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT  ++ LI QY+ L   E + L+FT ++
Sbjct: 301 ----GLIPEFVGRLPVVASLAELDEEALIRILTVPKNALIKQYQALFTLENVELEFTPEA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E VL D  +    L+  K VV+D + +   
Sbjct: 357 LTAIAKKALARKT-----GARGLRSIVEGVLLDTMYDLPSLEGLKKVVVDQDVIDNQ 408


>gi|146282419|ref|YP_001172572.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|145570624|gb|ABP79730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
          Length = 441

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/419 (25%), Positives = 170/419 (40%), Gaps = 89/419 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        + EL   NILL+GPTG GKT
Sbjct: 83  PKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGKT 142

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 143 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 198

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 199 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 243

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V   +I  +      
Sbjct: 244 --------------------RKHPQQEFL---------------QVDTRNILFICGGAFA 268

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I +R +  GIG + E   +D    +                       A    
Sbjct: 269 GLEKV--IQSRSTQGGIGFNAEVRSKDPGKKI---------------------GEALRAV 305

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F
Sbjct: 306 EPDDLVKFGLIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEF 365

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             D++ A+A  A+   +     GAR L++++E VL D  +     ++   VVID   + 
Sbjct: 366 RPDALKAVAHRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVIDESVIE 419


>gi|238759261|ref|ZP_04620428.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238791432|ref|ZP_04635070.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
 gi|238702548|gb|EEP95098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238729048|gb|EEQ20564.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
          Length = 423

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 162/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVIGQRINTGTGI--------------GFGATVKGKSEKATEGELLSQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    +   + VV+D   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVI 403


>gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|166214809|sp|Q1MIM6|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 425

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 173/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    + +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G+SV ++    +      +       
Sbjct: 254 AGLDKI--ISARGEKTSIGF--------------GASVKSQD---DRRVGEVLRELEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L+F ED+
Sbjct: 295 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 355 LREIARKAIVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
 gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum
           WAL-14163]
 gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           symbiosum WAL-14673]
          Length = 433

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ +AK+ +++A+ N ++R         EL   NIL++GPTG GK
Sbjct: 65  LKPKEIKEFLDEYVVGQDEAKKVLSVAVYNHYKRITSKGTQEVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   + ++    V    
Sbjct: 125 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKIIQSANYDISKAEYGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 181 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 206 VQQALLKILEGTVASVPPQGGRKHPQQELL---------------QIDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R     IG + E V +    + E                  +       
Sbjct: 251 DGLEKI--IENRLGAGSIGFNAEIVDKQNQDIDE-----------------LLKQVMPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L+SL++     IL++ ++ +I QY+     +G+ L+FTE++
Sbjct: 292 LTKFGLIPEFIGRVPVTVALRSLSEDALVKILSEPKNAIIKQYQAFFDLDGVKLEFTEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           + A+A +AV   +     GAR L+++ME ++ DI +    D       +  E V   
Sbjct: 352 LTAIAHLAVERKT-----GARGLRSIMESIMMDIMYEIPSDSSIGICTVTKEAVEGK 403


>gi|107101234|ref|ZP_01365152.1| hypothetical protein PaerPA_01002267 [Pseudomonas aeruginosa PACS2]
          Length = 426

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R        D EL   NIL++GPTG GKT
Sbjct: 68  PKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +                     + +  D+  ++   G  
Sbjct: 229 --------------------RKHP-----------------QQEFLQVDTRNILFICGGA 251

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F      I  R +  GIG + E   +++     G  V   +  +  + ++          
Sbjct: 252 FAGLERVIQNRSARGGIGFNAEVRSQEM-----GKKVGEAFKEVEPEDLVKF-------- 298

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++
Sbjct: 299 ---GLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E +L D  +     Q+   VVID   + 
Sbjct: 356 KAVAHKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVID 404


>gi|60115356|gb|AAX14030.1| ATP-binding subunit heat shock protein ClpX [Azospirillum
           brasilense]
          Length = 422

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/426 (24%), Positives = 165/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPQDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHATKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A    R ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAARLNRRAAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G  IG   +    D                                
Sbjct: 251 AGLDKI--IAQRGRGTSIGFGADVRGPDERR----------------------TGDILRE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+
Sbjct: 287 VEPEDLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMENVRLE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F++D++  ++  A+   +     GAR L+++ME +L D  F    L   + ++++ E V 
Sbjct: 347 FSDDALRTISHKAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVEEILVNKEVVE 401

Query: 421 LHIGDF 426
                 
Sbjct: 402 GRAKPL 407


>gi|292487468|ref|YP_003530340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           amylovora CFBP1430]
 gi|292898710|ref|YP_003538079.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198558|emb|CBJ45666.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552887|emb|CBA19932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia
           amylovora CFBP1430]
          Length = 424

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 169/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y++GQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +GIG+              G S S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGIGI--------------GFSASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|15596999|ref|NP_250493.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAO1]
 gi|116049752|ref|YP_791441.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152987449|ref|YP_001348853.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PA7]
 gi|218892244|ref|YP_002441111.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa LESB58]
 gi|254234896|ref|ZP_04928219.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa C3719]
 gi|254240195|ref|ZP_04933517.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 2192]
 gi|296389807|ref|ZP_06879282.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAb1]
 gi|313110499|ref|ZP_07796384.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 39016]
 gi|21263483|sp|Q9I2U0|CLPX_PSEAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122258863|sp|Q02KU5|CLPX_PSEAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214805|sp|A6V718|CLPX_PSEA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706595|sp|B7VB75|CLPX_PSEA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9947785|gb|AAG05191.1|AE004606_5 ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PAO1]
 gi|115584973|gb|ABJ10988.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126166827|gb|EAZ52338.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa C3719]
 gi|126193573|gb|EAZ57636.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 2192]
 gi|150962607|gb|ABR84632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           aeruginosa PA7]
 gi|218772470|emb|CAW28252.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa LESB58]
 gi|310882886|gb|EFQ41480.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           aeruginosa 39016]
          Length = 426

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R        D EL   NIL++GPTG GKT
Sbjct: 68  PKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                                 +    + +  D+  ++   G  
Sbjct: 229 -------------------------------------RKHPQQEFLQVDTRNILFICGGA 251

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F      I  R +  GIG + E   +++     G  V   +  +  + ++          
Sbjct: 252 FAGLERVIQNRSARGGIGFNAEVRSQEM-----GKKVGEAFKEVEPEDLVKF-------- 298

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D++
Sbjct: 299 ---GLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E +L D  +     Q+   VVID   + 
Sbjct: 356 KAVARKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVID 404


>gi|330972588|gb|EGH72654.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 427

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 172/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAKTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|296101560|ref|YP_003611706.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056019|gb|ADF60757.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 424

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 170/419 (40%), Gaps = 88/419 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G++V  K    N   +L         
Sbjct: 255 ------DKVISHRVETGSGIGF------------GATVKAKSEKANEGELL-------SQ 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+
Sbjct: 290 VEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           F ++++DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 350 FRDEALDAIAKKAMIRKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|291520782|emb|CBK79075.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus
           catus GD/7]
          Length = 432

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 173/418 (41%), Gaps = 80/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD+Y+IGQ+ AK+ +++A+ N ++R    A    EL   NI++VGPTG GK
Sbjct: 62  LKPVEIKNFLDQYVIGQEQAKKVLSVAVYNHYKRIASNAGNDVELQKSNIIMVGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ R  +    
Sbjct: 122 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIEKAERGII---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 178 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFLQIDTTNILFICGG 245

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  DKIV +R  G  IG + +         V+    +            F+  G   
Sbjct: 246 AF-DGLDKIVESRTGGQSIGFNADI-------HVKEEEQNVSELMKQALPQDFVKYG--- 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V L  L++     +LT+ +S +I QYK+L + +G+ L+F ++
Sbjct: 295 ------LIPEFVGRVPVSVSLDLLDEDALVRVLTEPKSAIIKQYKKLFQLDGVDLEFEDE 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++  +A  +   N+     GAR L++++E VL D  F+   D   +  +I    V   
Sbjct: 349 AVHEIAHRSFMRNT-----GARGLRSIVENVLMDTMFTLPSDETVEKCIITKAVVDGQ 401


>gi|315607429|ref|ZP_07882425.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae
           ATCC 33574]
 gi|315250861|gb|EFU30854.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae
           ATCC 33574]
          Length = 413

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 178/419 (42%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            PREI   LD YIIGQ DAKR +A+A+ N ++R Q PA D   E+   NI++VG TG GK
Sbjct: 65  KPREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R  V    
Sbjct: 125 TLLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 181 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 205 GVQQAMLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                  I+ + I  +       
Sbjct: 249 AFDGIERKIAQRLNTHVVGYNS--VQH--------------VRKIDKEDI--MQYIQPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV  +L  L +   R ILT+ ++++I QY +L + +G+ L F E +
Sbjct: 291 LKSFGLIPELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     + K   I A+Y +  +  
Sbjct: 351 LDYIVDKAVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAKEQLEK 404


>gi|332878106|ref|ZP_08445836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684068|gb|EGJ56935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 411

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/429 (26%), Positives = 186/429 (43%), Gaps = 86/429 (20%)

Query: 3   LTFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNIL 57
           L F+      PR+I + LD+Y+IGQ DAKR +A+A+ N ++R  Q  +D   E+   NI+
Sbjct: 54  LGFDLAELPKPRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNII 113

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           +VG TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V+ +
Sbjct: 114 MVGSTGTGKTLLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAA 173

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           +R  V            +D                             +I+     SD  
Sbjct: 174 QRGIV-----------FID-----------------------------EIDKIARKSDNP 193

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           +             L +L    M +   K  R                   D D +H D+
Sbjct: 194 SITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHP----------------DQDYIHVDT 237

Query: 238 IQMVENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
             ++   G  F D  + KI  R + + +G                S  + ++     D  
Sbjct: 238 RNILFICGGAF-DGIEKKIAQRMNTHVVGY--------------NSVQNMQHI----DKS 278

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
             +        +   L+PEI GR PV  +L  L+++  R ILT+ +++++ Q  +L + +
Sbjct: 279 NLMKYILPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L F ED+++ + D AV  N     +GAR L+++ME ++ D  F     + KT  +  
Sbjct: 339 GIKLSFDEDTLEYIVDKAVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTL 393

Query: 417 EYVRLHIGD 425
           EY +  +  
Sbjct: 394 EYAKKQLEK 402


>gi|292487470|ref|YP_003530342.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Erwinia
           amylovora CFBP1430]
 gi|292898712|ref|YP_003538081.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198560|emb|CBJ45668.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552889|emb|CBA19934.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora CFBP1430]
 gi|312171575|emb|CBX79833.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora ATCC BAA-2158]
          Length = 424

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 169/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y++GQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +GIG+              G S S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGIGI--------------GFSASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|254480379|ref|ZP_05093626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2148]
 gi|214038962|gb|EEB79622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2148]
          Length = 432

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 170/417 (40%), Gaps = 82/417 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPTGV 64
           P+EI   LD Y+IGQ+ AK+ +++A+ N ++R +           EL   NILLVGPTG 
Sbjct: 70  PQEINGILDEYVIGQKRAKKVLSVAVYNHYKRLRHAQSQTRGEEVELGKSNILLVGPTGS 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V  
Sbjct: 130 GKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQVGIVY- 188

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 189 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 233

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+                  V   +I  +   
Sbjct: 234 -----------------------RKHPQQEFL---------------QVDTSNILFICGG 255

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LD    I  R    GIG               G+ V +K  + N   +LF      
Sbjct: 256 AFAGLDNV--IRNRSEKRGIGF--------------GAEVKSKDETSNIGELLFELE--P 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+      ILT+ +++L  QY +L + EG+ +DF E
Sbjct: 298 EDLVQYGLIPEFVGRLPVIATLEELDAEALVQILTEPKNSLTKQYSKLFEMEGVEVDFRE 357

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D + A+A+ A+   +     GAR L++++E +L D  ++     +   VVID   +R
Sbjct: 358 DGLHAVAEKAMERKT-----GARGLRSILEGILLDSMYNIPSRDDVSKVVIDESVIR 409


>gi|218768389|ref|YP_002342901.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           meningitidis Z2491]
 gi|21263484|sp|Q9JTX8|CLPX_NEIMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121052397|emb|CAM08729.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis Z2491]
          Length = 414

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|113867497|ref|YP_725986.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha
           H16]
 gi|123033070|sp|Q0KBK3|CLPX_RALEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113526273|emb|CAJ92618.1| ATP-dependent Clp protease ATP-binding subunit (ClpX) [Ralstonia
           eutropha H16]
          Length = 425

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 179/416 (43%), Gaps = 82/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I+ R    GIG      Q       + S V  +     T+    I  G   
Sbjct: 253 AF-DGLEKVIMQRSDKTGIGF---AAQVKSKEERDASEVLPQ-----TEPEDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    
Sbjct: 301 ------LIPELIGRLPVVATLSKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPG 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E+ L D+ +   + +  + VVID   + 
Sbjct: 355 ALSAIARKAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN 405


>gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit [Paracoccus
           denitrificans PD1222]
 gi|166214797|sp|A1B1H7|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus
           denitrificans PD1222]
          Length = 421

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/401 (25%), Positives = 160/401 (39%), Gaps = 78/401 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI + LD Y+IGQ+ AKR +++A+ N ++R    +    EL   NILL+GPTG GKT
Sbjct: 65  TPREICNVLDDYVIGQEHAKRVLSVAVHNHYKRLNHSSKTDIELAKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD    I  R+ G  +G          +   +   V   +  +  + +L          
Sbjct: 251 GLDRI--IAQRNKGTAMGFG------AAVKEDDDKGVGELFKQLEPEDLLKF-------- 294

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L   E + L FTED++
Sbjct: 295 ---GLIPEFVGRLPVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
            A+A  A+   +     GAR L+++ME +L D  F    + 
Sbjct: 352 TAIAKRAIKRKT-----GARGLRSIMEDILLDTMFDLPGMD 387


>gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 422

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 169/426 (39%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPRDICGVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+ +G   +    D   +          G I TD            
Sbjct: 251 AGLDKI--IAARGKGSAMGFGADVRDNDARGI----------GEIFTDL-------EPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D+
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFELEDTQLTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E +L D  F    L   T VV++ E V      
Sbjct: 352 LTAIAKRAIERKT-----GARGLRSILEDILLDTMFELPGLDTVTEVVVNEEAVMSEAKP 406

Query: 426 FPSETD 431
                D
Sbjct: 407 LMIHAD 412


>gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|238066658|sp|B5ZY09|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 425

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 171/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    + +   EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V  +    +      +       
Sbjct: 254 AGLDKI--ISARGEKTSIGF--------------GATVKAQD---DRRVGEVLRELEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ LI QY+ L + E + L F ED+
Sbjct: 295 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  E VR
Sbjct: 355 LREIARKAIVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404


>gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris CGA009]
 gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris TIE-1]
 gi|61211520|sp|Q6N5L4|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229484081|sp|B3Q7P4|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX
           [Rhodopseudomonas palustris CGA009]
 gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris TIE-1]
          Length = 424

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I +R     IG + + +  +     E       +  +  + +L         
Sbjct: 251 AGLEKI--ISSRGRTTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E + L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVD 401


>gi|269914470|pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914471|pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914472|pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914473|pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914474|pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
 gi|269914475|pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
          Length = 363

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 168/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 5   TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 65  TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 121

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                ++I          S TR+V  + ++   +  K I+  VA                
Sbjct: 122 ----IDQIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 164

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 165 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 193

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 194 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 233

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 234 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 293

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 294 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKP 348

Query: 426 FP 427
             
Sbjct: 349 LL 350


>gi|51595310|ref|YP_069501.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 32953]
 gi|61211451|sp|Q66DT3|CLPX_YERPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51588592|emb|CAH20200.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Yersinia pseudotuberculosis IP 32953]
          Length = 423

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 167/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   + +   SG G G   +G           S V  +      D I F       
Sbjct: 252 AGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPE------DLIKF------- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 299 -----GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E VL D  +    +   + VV+D   +
Sbjct: 354 ALTAIAKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSMDSVEKVVVDESVI 403


>gi|288924567|ref|ZP_06418504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccae D17]
 gi|288338354|gb|EFC76703.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccae D17]
          Length = 414

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 178/419 (42%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            PREI   LD YIIGQ DAKR +A+A+ N ++R Q PA D   E+   NI++VG TG GK
Sbjct: 66  KPREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  ++R  V    
Sbjct: 126 TLLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQRGIV---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 182 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 206 GVQQAMLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                  I+ + I  +       
Sbjct: 250 AFDGIERKIAQRLNTHVVGYNS--VQH--------------VRKIDKEDI--MQYIQPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV  +L  L +   R ILT+ ++++I QY +L + +G+ L F E +
Sbjct: 292 LKSFGLIPELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     + K   I A+Y +  +  
Sbjct: 352 LDYIVDKAVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAKEQLEK 405


>gi|163731526|ref|ZP_02138973.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
 gi|161394980|gb|EDQ19302.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis
           Och 149]
          Length = 421

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/429 (25%), Positives = 169/429 (39%), Gaps = 80/429 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+ +G   +    D   +          G I TD            
Sbjct: 251 AGLDKI--IAARGKGSAMGFGADVRGNDDRGV----------GEIFTDL-------EPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELSFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E +L +  F    L   T VV++ E V      
Sbjct: 352 LSAIAKRAIERKT-----GARGLRSILEDILLNTMFELPGLDSVTEVVVNEEAVNSDAAP 406

Query: 426 FPSETDMYH 434
                D   
Sbjct: 407 LMIHADASK 415


>gi|238751007|ref|ZP_04612503.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238783608|ref|ZP_04627629.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238795541|ref|ZP_04639056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
 gi|238710697|gb|EEQ02919.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238715486|gb|EEQ07477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238720660|gb|EEQ12461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
          Length = 423

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 162/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVIGQRINTGTGI--------------GFGATVKGKSEKATEGELLSQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    +   + VV+D   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVI 403


>gi|256556953|gb|ACU83575.1| ATP-dependent protease Clp ATPase subunit [uncultured bacterium
           HF130_AEPn_2]
          Length = 427

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG S E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFSAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRAD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 355 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 409

Query: 425 DF 426
             
Sbjct: 410 PL 411


>gi|209964555|ref|YP_002297470.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum
           centenum SW]
 gi|238066659|sp|B6ISY6|CLPX_RHOCS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209958021|gb|ACI98657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodospirillum centenum SW]
          Length = 421

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 166/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPR+I + LD Y+IGQ+ AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  SPRDICAVLDDYVIGQEHAKRVLSVAVHNHYKRLAHGAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I AR  G  IG   +    D                                
Sbjct: 251 AGLERI--IAARGKGTSIGFGADVRAPDERR----------------------TGDILRE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L 
Sbjct: 287 VEPEDLLKFGLIPEFVGRLPVVATLHDLDENALIEILTKPKNALVKQYQRLFEMEDVKLG 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             E+++ ++A  A+   +     GAR L+++ME +L +  F    LQ  + +VI+ E V 
Sbjct: 347 IHEEALRSIAVKAIQRKT-----GARGLRSIMESILLEPMFDLPGLQGVEEIVINKEVVE 401

Query: 421 LHIGDF 426
                 
Sbjct: 402 GRAKPL 407


>gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus parainfluenzae T3T1]
          Length = 412

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDTEKAEQGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 180 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  V    I  +     
Sbjct: 225 ---------------------RKHPQQE---------------MLKVDTSKILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L   DKI+ + +    G+   G    +    +  ++S  +  +  D ++         
Sbjct: 249 AGL---DKIIGKRTQTDTGI---GFDAKVEKEEDKENLSELFRQVEPDDLMKF------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ L  QY+ L   E + L+FT ++
Sbjct: 296 ----GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E VL D  +    ++  + V++D E +
Sbjct: 352 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETI 400


>gi|332160750|ref|YP_004297327.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604629|emb|CBY26127.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664980|gb|ADZ41624.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859949|emb|CBX70278.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           enterocolitica W22703]
          Length = 423

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 163/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVIGQRINTGSGI--------------GFGATVKGKSEKATEGELLSQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    ++  + VV+D   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVVDESVI 403


>gi|148259929|ref|YP_001234056.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum
           JF-5]
 gi|326403117|ref|YP_004283198.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
 gi|254763827|sp|A5FX05|CLPX_ACICJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146401610|gb|ABQ30137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidiphilium
           cryptum JF-5]
 gi|325049978|dbj|BAJ80316.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium
           multivorum AIU301]
          Length = 418

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 165/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D E+   NI+LVGPTG GK
Sbjct: 64  TPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 205 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R  G+GIG   +                                     
Sbjct: 250 AGLEKI--IAQRGKGSGIGFGADVRDPTEQR----------------------TGAILRE 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + EG+ L+
Sbjct: 286 VEPEDLLKFGLIPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLN 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FTED++  +A  A+   +     GAR L+++ME +L +  F    L   + VVI+ E   
Sbjct: 346 FTEDALKVVAARAIQRKT-----GARGLRSIMENILLETMFDLPGLDSVEEVVINGEVAE 400

Query: 421 LHIGDF 426
                 
Sbjct: 401 GRANPL 406


>gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442839|gb|EDP19844.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii SL3/3]
          Length = 440

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 175/422 (41%), Gaps = 93/422 (22%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI   LD+Y+IGQ +AKR +++++ N ++R         EL   N+LL+GP+GVGK
Sbjct: 82  MTPAEIKEGLDQYVIGQDEAKRVLSVSVYNHYKRILSGKGGDVELQKSNVLLLGPSGVGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   V++++   +    
Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQIGII---- 197

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S + S     GG  
Sbjct: 198 ----------------------------------YIDEID-KITRKSENPSITRDVGGEG 222

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 223 VQQALLKILEGTVSNVPPQGGRKHP-----------------QQEFIQIDTTNILFICGG 265

Query: 247 VFLDEFDK-IVARDSGNGIGV------SREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            F D  DK I+ R   + +G       +    +R LL  VE   +  K+G          
Sbjct: 266 AF-DGLDKYILRRTDKSALGFGSALKDNSTEAERALLRKVEPHDL-VKFG---------- 313

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + 
Sbjct: 314 ------------LIPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLGMDNVE 361

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L FT++++ A+A   +   +     GAR L++VME +L  I +    D     V +D + 
Sbjct: 362 LTFTDEALHAIARKTIERKT-----GARGLRSVMESILLPIMYEVPSDATIIRVTVDEDT 416

Query: 419 VR 420
           V 
Sbjct: 417 VE 418


>gi|302187982|ref|ZP_07264655.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae 642]
          Length = 427

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|229591361|ref|YP_002873480.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens SBW25]
 gi|259491265|sp|C3JYJ9|CLPX_PSEFS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229363227|emb|CAY50310.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Pseudomonas fluorescens SBW25]
          Length = 427

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG S E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQQRSTRGGIGFSAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 355 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 409

Query: 425 DF 426
             
Sbjct: 410 PL 411


>gi|238919012|ref|YP_002932526.1| ATP-dependent protease ATP-binding subunit ClpX [Edwardsiella
           ictaluri 93-146]
 gi|238868581|gb|ACR68292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX, putative
           [Edwardsiella ictaluri 93-146]
          Length = 435

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 172/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A    EL   NILL+GPTG GK
Sbjct: 78  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDASNGVELGKSNILLIGPTGSGK 137

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 138 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 194

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 195 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 237

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 238 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 266

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+   G    +    + +S S   G +  + ++         
Sbjct: 267 ------DKVIGQRVNTGTGI---GFGAKVKGKADKASESELLGQVEPEDLIKF------- 310

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 311 ----GLIPEFIGRLPVVATLKELDEAALIQILQEPKNALTKQYQALFGLEGVDLEFRDEA 366

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E  L D  +    ++  + VV+D   +   
Sbjct: 367 LTAIAKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVVDENVINGQ 418


>gi|330503118|ref|YP_004379987.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           mendocina NK-01]
 gi|328917404|gb|AEB58235.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           mendocina NK-01]
          Length = 426

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 171/414 (41%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 68  PKEISAILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------ 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +       + I       +  L +      +      +  I         
Sbjct: 227 ---GGRKHPQQEFLQVDTRNILFICGGAFAGLEK------VIQARSTKGGIGFGAE---- 273

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  + ++  G  IG S   V+ D L          K+G                  
Sbjct: 274 -------VRSKQEGKKIGESLREVEPDDL---------VKFG------------------ 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L+++    ILT+ ++ L  QY +L + EG+ L+F  D++
Sbjct: 300 ----LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ++A  A+   +     GAR L++++E +L D  +     Q+   VVID   + 
Sbjct: 356 KSVAQKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIE 404


>gi|157369339|ref|YP_001477328.1| ATP-dependent protease ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
 gi|167009020|sp|A8GAR0|CLPX_SERP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157321103|gb|ABV40200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
          Length = 423

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/414 (24%), Positives = 161/414 (38%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIGQRVNTGSGI--------------GFGATVKGESEKATEGELLLQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++A+A  A+   +     GAR L++++E  L D  +    +     VVID   +
Sbjct: 355 LNAIARKAMKRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVI 403


>gi|254441479|ref|ZP_05054972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 307]
 gi|198251557|gb|EDY75872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 307]
          Length = 422

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/413 (25%), Positives = 166/413 (40%), Gaps = 79/413 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD Y+IGQ+ AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLNHADKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  V      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFVCGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G G+G   E    D   + E           + +    +  G     
Sbjct: 251 GLDKI--IAQRGKGAGMGFGAEVRGPDERGVGE--------IFNDLEPEDLLKFG----- 295

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++     IL+  ++ L+ QY+ L + E   L FT+D++
Sbjct: 296 ----LIPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 352 VAIAKRAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 399


>gi|330996066|ref|ZP_08319960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574063|gb|EGG55641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Paraprevotella xylaniphila YIT 11841]
          Length = 411

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 186/429 (43%), Gaps = 86/429 (20%)

Query: 3   LTFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNIL 57
           L F+      PR+I + LD+Y+IGQ DAKR +A+A+ N ++R  Q  +D   E+   NI+
Sbjct: 54  LGFDLAELPKPRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNII 113

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           +VG TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V+ +
Sbjct: 114 MVGSTGTGKTLLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAA 173

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           +R  V            +D                             +I+     SD  
Sbjct: 174 QRGIV-----------FID-----------------------------EIDKIARKSDNP 193

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           +             L +L    M +   K  R                   D D +H D+
Sbjct: 194 SITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHP----------------DQDYIHVDT 237

Query: 238 IQMVENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
             ++   G  F D  + KI  R + + +G                S  + ++     D  
Sbjct: 238 RNILFICGGAF-DGIEKKIAQRMNTHVVGY--------------NSVQNMQHI----DKS 278

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
             +        +   L+PEI GR PV  +L  L+++  R ILT+ +++++ Q  +L + +
Sbjct: 279 NLMKYILPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           GI L F ED+++ + D AV  N     +GAR L+++ME ++ D  F     + KT  +  
Sbjct: 339 GIKLSFDEDTLEYIVDKAVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTL 393

Query: 417 EYVRLHIGD 425
           +Y +  +  
Sbjct: 394 DYAKKQLEK 402


>gi|71734283|ref|YP_273936.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|123637276|sp|Q48KY9|CLPX_PSE14 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71554836|gb|AAZ34047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 427

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|269914476|pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914477|pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914478|pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914479|pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914480|pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
 gi|269914481|pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
          Length = 363

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 168/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 5   TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 64

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 65  TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 121

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                ++I          S TR+V  + ++   +  K I+  VA                
Sbjct: 122 ----IDQIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 164

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 165 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 193

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 194 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 233

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 234 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 293

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +      
Sbjct: 294 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEP 348

Query: 426 FP 427
             
Sbjct: 349 LL 350


>gi|28870880|ref|NP_793499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968835|ref|ZP_03396976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato T1]
 gi|301384119|ref|ZP_07232537.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059518|ref|ZP_07251059.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato K40]
 gi|302135031|ref|ZP_07261021.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|38257469|sp|Q87YR7|CLPX_PSESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28854129|gb|AAO57194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926438|gb|EEB59992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tomato T1]
 gi|331019230|gb|EGH99286.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 427

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium loti
           MAFF303099]
 gi|21263478|sp|Q982V5|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium
           loti MAFF303099]
          Length = 424

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/414 (26%), Positives = 167/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R     IG               G++V++     +              
Sbjct: 253 AGLDKI--ISDRGRKTSIGF--------------GATVASP---EDRRTGDIFRQVEPED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E + L F E++
Sbjct: 294 LLKFGLIPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E V
Sbjct: 354 LSAIAKRAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402


>gi|237747782|ref|ZP_04578262.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
 gi|229379144|gb|EEO29235.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           OXCC13]
          Length = 423

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 177/418 (42%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +      D  EL   NILLVGPTG G
Sbjct: 67  TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKFYGGKNDDVELSKSNILLVGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQGCEYDVEKAQRGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                    +D                             +I+     SD  +       
Sbjct: 185 ---------ID-----------------------------EIDKISRKSDNPSITRDVSG 206

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L ++    M S   +  R                   + D +  D+  ++   G
Sbjct: 207 EGVQQALLKMIEGTMASVPPQGGRKHP----------------NQDFISVDTTNIMFICG 250

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D   KI++ R    GIG S     +    +VE   ++      + +    I  G  
Sbjct: 251 GAF-DGLTKIISNRSEKGGIGFSAR--VKSPTDIVESEKLA------DVEPEDLIKFG-- 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L +     IL   ++ L+ QY +L++ EG  L+   
Sbjct: 300 -------LIPELIGRLPVVAVLHELTEEALVDILEKPKNALVKQYTKLLQMEGAELEIRP 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           +++ A+A  A+   +     GAR L+++ME +L D+ ++   +     VVID   V  
Sbjct: 353 EALRAIARKALERKT-----GARGLRSIMENLLLDVMYNLPTEQNVTKVVIDENTVTK 405


>gi|330952798|gb|EGH53058.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae Cit 7]
          Length = 427

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|66044993|ref|YP_234834.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae B728a]
 gi|237803595|ref|ZP_04591180.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|257483814|ref|ZP_05637855.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289627505|ref|ZP_06460459.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649944|ref|ZP_06481287.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289679416|ref|ZP_06500306.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486264|ref|ZP_07004327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|81308383|sp|Q4ZVM6|CLPX_PSEU2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|63255700|gb|AAY36796.1| ClpX, ATPase regulatory subunit [Pseudomonas syringae pv. syringae
           B728a]
 gi|298159271|gb|EFI00329.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325362|gb|EFW81429.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327653|gb|EFW83661.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868374|gb|EGH03083.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330878773|gb|EGH12922.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330882124|gb|EGH16273.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330889996|gb|EGH22657.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330939707|gb|EGH43002.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330959388|gb|EGH59648.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330963319|gb|EGH63579.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330975102|gb|EGH75168.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|330985640|gb|EGH83743.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331012680|gb|EGH92736.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331025577|gb|EGI05633.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 427

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ ++A  A+   +     GAR L++++E VL D  +      +   VVID   + 
Sbjct: 355 ALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSKVVIDESVID 405


>gi|15888589|ref|NP_354270.1| ATP-dependent protease ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|23813866|sp|Q8UFY5|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 425

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 170/414 (41%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V  +    +      +       
Sbjct: 254 AGLDKI--ISARGEKTSIGF--------------GATVKAED---DRRVGEVLRELEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L F ED+
Sbjct: 295 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 355 LREIARRAITRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISNDVV 403


>gi|70731345|ref|YP_261086.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf-5]
 gi|68345644|gb|AAY93250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf-5]
          Length = 438

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKSDDVELGKSNILLIGPTGSG 137

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 138 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 195

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 196 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 240

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 241 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 264 FSGLEKV--IQNRSTKGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 310

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 311 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 365

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 366 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSQ 420

Query: 425 DF 426
             
Sbjct: 421 PL 422


>gi|257093850|ref|YP_003167491.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046374|gb|ACV35562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 423

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 176/416 (42%), Gaps = 82/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ  AKR +++A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPKEISALLDQYVIGQDQAKRILSVAVYNHYKRLRHHGRAGDDIELAKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+  A     +++R  V   
Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKADYDTEKAQRGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALLKI--IEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFICG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K++  R    GIG   E   +D    +         G    D I F      
Sbjct: 250 GAF-DGLEKVIRNRSDRGGIGFGAEVKSKDNSKAIG----EVLRGVEPEDLIKF------ 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L+ L+ +    IL + ++ L+ QY++L   EG+ L+  +
Sbjct: 299 ------GLIPELIGRLPVIATLEELSAAALVQILIEPKNALVKQYQKLFGMEGVALEIRQ 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++ A+A  A+   +     GAR L++++E VL D  +    ++    V+ID   +
Sbjct: 353 AAMLAIARKALERKT-----GARGLRSILESVLLDTMYELPGMENVSEVIIDENVI 403


>gi|146310566|ref|YP_001175640.1| ATP-dependent protease ATP-binding subunit ClpX [Enterobacter sp.
           638]
 gi|167009015|sp|A4W7A9|CLPX_ENT38 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145317442|gb|ABP59589.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           sp. 638]
          Length = 424

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/427 (24%), Positives = 169/427 (39%), Gaps = 88/427 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G++V  K    N   +L         
Sbjct: 255 ------DKVISHRVETGSGIGF------------GATVKAKSEKANEGELL-------SQ 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+
Sbjct: 290 VEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ++++ A+A  A+   +     GAR L++++E  L D  +    +++ + VVID   + 
Sbjct: 350 FRDEALIAIAKKAMIRKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDEAVIS 404

Query: 421 LHIGDFP 427
                  
Sbjct: 405 GQTKPLL 411


>gi|304395500|ref|ZP_07377383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308185909|ref|YP_003930040.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
 gi|304356794|gb|EFM21158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308056419|gb|ADO08591.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
          Length = 423

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVISQRVETGSGI--------------GFGATVKGKSQKASEGELLSQCEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A++  +     GAR L++++E  L +  +    + + + VVID   +   
Sbjct: 355 LTAIAKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVIDESVIEGQ 406


>gi|312961788|ref|ZP_07776286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens WH6]
 gi|311284047|gb|EFQ62630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           fluorescens WH6]
          Length = 438

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 137

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 138 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 195

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 196 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 240

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 241 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG S E     +    EG  V      +  D ++        
Sbjct: 264 FSGLEKV--IQQRSTRGGIGFSAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 310

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 311 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTD 365

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 366 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 420

Query: 425 DF 426
             
Sbjct: 421 PL 422


>gi|294635325|ref|ZP_06713822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
 gi|291091301|gb|EFE23862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
          Length = 423

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 172/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+   G    +    + +S S   G +  + ++         
Sbjct: 255 ------DKVIGQRVNTGTGI---GFGAKVKGKADKASESELLGQVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L+++    IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E  L D  +    ++  + VV+D + +   
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVVDEQVIEGQ 406


>gi|218510050|ref|ZP_03507928.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli Brasil
           5]
          Length = 209

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/209 (67%), Positives = 171/209 (81%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D + + R++++  EN GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKY
Sbjct: 1   DNEVIQREAVRSTENDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKY 60

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G + TDHILFIASGAFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI Q
Sbjct: 61  GPVKTDHILFIASGAFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQ 120

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ LM+TE + LDFTED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D  
Sbjct: 121 YRALMETESLSLDFTEDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRS 180

Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
              + IDA YVR H+GD    TD+  FIL
Sbjct: 181 GTAITIDAAYVREHVGDLAQNTDLSRFIL 209


>gi|291616550|ref|YP_003519292.1| ClpX [Pantoea ananatis LMG 20103]
 gi|291151580|gb|ADD76164.1| ClpX [Pantoea ananatis LMG 20103]
 gi|327392982|dbj|BAK10404.1| ATP-dependent Clp protease ATP- binding subunit ClpX [Pantoea
           ananatis AJ13355]
          Length = 423

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVISQRVETGSGI--------------GFGATVKGKSQKATEGELLSQCEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A++  +     GAR L++++E  L +  +    + + + VVID   +   
Sbjct: 355 LTAIAKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVIDESVIEGQ 406


>gi|330808573|ref|YP_004353035.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376681|gb|AEA68031.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 427

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 355 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 409

Query: 425 DF 426
             
Sbjct: 410 PL 411


>gi|325292626|ref|YP_004278490.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
 gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium
           sp. H13-3]
          Length = 425

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 170/414 (41%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ+ AK+ +++A+ N ++R    +   D EL   NI+LVGPTG GK
Sbjct: 68  TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR     IG               G++V  +    +      +       
Sbjct: 254 AGLDKI--ISARGEKTSIGF--------------GATVKAED---DRRVGEVLRELEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E + L F ED+
Sbjct: 295 LVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  +A  A+   +     GAR L+++ME++L D  F    L+  + VVI  + V
Sbjct: 355 LREIARRAITRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISNDVV 403


>gi|238754236|ref|ZP_04615593.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
 gi|238707483|gb|EEP99843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
          Length = 423

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 161/422 (38%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIGQRLNTGTGI--------------GFGATVKGKSEKATEGELLRQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L D  +    L+    VV+D   +      
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVVDESVIEGQSAP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|126733144|ref|ZP_01748891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. CCS2]
 gi|126716010|gb|EBA12874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. CCS2]
          Length = 421

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 164/421 (38%), Gaps = 79/421 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPSEICGVLDDYVIGQMHAKRVLSVAVHNHYKRLNHAEKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G+ +G   +  + D   +          G I TD             
Sbjct: 251 GLDKI--IAQRGKGSAMGFGADVREDDDRGI----------GEIFTDL-------EPEDL 291

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L   E   L FTED++
Sbjct: 292 LKFGLIPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFDLEDTKLTFTEDAL 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDF 426
            A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V   +   
Sbjct: 352 AAIAKRAIERKT-----GARGLRSIMEDILLDTMFDLPGMDTVTEVVVNEEAVNSEVAPL 406

Query: 427 P 427
            
Sbjct: 407 M 407


>gi|313201271|ref|YP_004039929.1| ATP-dependent clp protease, ATP-binding subunit clpx [Methylovorus
           sp. MP688]
 gi|312440587|gb|ADQ84693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. MP688]
          Length = 423

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/418 (26%), Positives = 175/418 (41%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGV 64
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R    A       E+   NIL++GPTG 
Sbjct: 64  TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+      + +++R  V  
Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVY- 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 183 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 227

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +                   + + V  D+  ++   
Sbjct: 228 -----------------------RKHP-----------------NQEFVQLDTTNILFIC 247

Query: 245 GIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  DKI+  R    GIG   E   +D L  V       +      D I F     
Sbjct: 248 GGAF-DGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVE----PEDLIKF----- 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F 
Sbjct: 298 -------GLIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFR 350

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           E ++  ++  A+   +     GAR L+++ME  L +I F    +     VV+D   VR
Sbjct: 351 ESALRLISKKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403


>gi|218885219|ref|YP_002434540.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756173|gb|ACL07072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 512

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 176/418 (42%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGV 64
            +P EI ++LD Y+IGQ  AK+ +++A+ N ++R    + L    EL   NILL+GP+G 
Sbjct: 62  LTPAEIKAKLDEYVIGQHQAKKILSVAVHNHYKRVFFASALGGEVELEKSNILLIGPSGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +          
Sbjct: 122 GKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDI---------- 171

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                A + I+                            EID +++      S      G
Sbjct: 172 ---EAASKGII-------------------------YIDEID-KISRKGDGPSITRDVSG 202

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +         K   +   Q+             I MDT    +I  +   
Sbjct: 203 EGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDT---SNILFILGG 247

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             + LD+   I  R  G  +G   +   R  LP  E        G ++ + ++       
Sbjct: 248 AFIGLDKL--IGQRIGGGAMGFGAKVATRKDLPFGE------LLGQVHPNDLVKF----- 294

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV  H++ L++ D   ILT+ ++ L+ QY++L + + + L FT 
Sbjct: 295 ------GLIPEFVGRIPVVTHVEELSEDDLVRILTEPKNALVRQYQKLFELDKVNLRFTA 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++ ++A  A+   +     GAR L+ VME V+ DI +     Q+ K  VI+   V  
Sbjct: 349 NALKSIASQAIERKT-----GARGLRNVMESVMLDIMYKLPSQQDIKECVINRAVVEK 401


>gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi
           DSS-3]
 gi|81350417|sp|Q5LUP9|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria
           pomeroyi DSS-3]
          Length = 424

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 168/415 (40%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 67  TPRDICDVLDDYVIGQSTAKRVLSVAVHNHYKRLNHAQKAGSDIELAKSNILLIGPTGCG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 127 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 184 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 208 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R  G+ +G   +    D   + E                LF       
Sbjct: 253 FAGLDKI--IAQRGKGSAMGFGADVRASDERGVGE----------------LFTELEPED 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT+D
Sbjct: 295 LLK-FGLIPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDD 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 354 ALKAIAKRAIERKT-----GARGLRSIMEDILLDTMFDLPSMDNVTKVVVNEEAV 403


>gi|293392544|ref|ZP_06636864.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
 gi|291424946|gb|EFE98155.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
          Length = 437

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/415 (24%), Positives = 167/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 80  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 139

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 140 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 196

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 197 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQGG--------- 241

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 242 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 265

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   + V   SG G G + +G                      T+  L + +    
Sbjct: 266 AGLDKVIGQRVNTGSGIGFGATVKGEAEKA-----------------TEGELLLQAEPED 308

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 309 LIK-FGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDE 367

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++A+A  A+   +     GAR L++++E  L D  +    +     VVID   +
Sbjct: 368 ALNAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVI 417


>gi|213521160|gb|ACJ50517.1| ATP-dependent protease ATP-binding subunit [Pseudomonas
           fluorescens]
          Length = 438

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 78  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 137

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 138 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 195

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 196 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 240

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 241 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG S E     +    EG  V      +  D ++        
Sbjct: 264 FSGLEKV--IQQRSTRGGIGFSAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 310

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 311 -----GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYGKLFEMEGVDLEFRTD 365

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 366 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 420

Query: 425 DF 426
             
Sbjct: 421 PL 422


>gi|253999169|ref|YP_003051232.1| ATP-dependent protease ATP-binding subunit ClpX [Methylovorus sp.
           SIP3-4]
 gi|253985848|gb|ACT50705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus
           sp. SIP3-4]
          Length = 423

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/418 (26%), Positives = 175/418 (41%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGV 64
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R    A       E+   NIL++GPTG 
Sbjct: 64  TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+      + +++R  V  
Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDIEKAQRGIVY- 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 183 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 227

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +                   + + V  D+  ++   
Sbjct: 228 -----------------------RKHP-----------------NQEFVQLDTTNILFIC 247

Query: 245 GIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  DKI+  R    GIG   E   +D L  V       +      D I F     
Sbjct: 248 GGAF-DGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVE----PEDLIKF----- 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F 
Sbjct: 298 -------GLIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFR 350

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           E ++  ++  A+   +     GAR L+++ME  L +I F    +     VV+D   VR
Sbjct: 351 ESALRLISKKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403


>gi|259909253|ref|YP_002649609.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae
           Ep1/96]
 gi|224964875|emb|CAX56397.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Erwinia pyrifoliae Ep1/96]
 gi|310766843|gb|ADP11793.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp.
           Ejp617]
          Length = 424

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|26989025|ref|NP_744450.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           KT2440]
 gi|38257486|sp|Q88KI9|CLPX_PSEPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24983848|gb|AAN67914.1|AE016423_9 ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida KT2440]
          Length = 442

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 170/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 82  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 141

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 142 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 199

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 200 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 244

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 245 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 267

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG   E     +    EG  V      +  D ++        
Sbjct: 268 FSGLEKV--IQNRSTKGGIGFGAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 314

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D
Sbjct: 315 -----GLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSD 369

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     ++   VVID   + 
Sbjct: 370 ALKAVARKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIE 420


>gi|308389490|gb|ADO31810.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           meningitidis alpha710]
          Length = 414

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 354 LSSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 404


>gi|116062107|dbj|BAF34686.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Aeromonas veronii]
          Length = 424

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 179/415 (43%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRTGSESGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+    L + ++ +++                G 
Sbjct: 228 ---------------------RKHPQQE----LSQVDTSKIL-------------FICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DK++ + S  G G+   G   ++      +++S  +  +  + +L         
Sbjct: 250 AFAG-LDKVLEQRSVKGTGI---GFGAEVKSKSAKATLSESFAKVEPEDLL--------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L F +D+
Sbjct: 297 --KYGLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELQFRDDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++A+A  A+   +     GAR L++++E VL D  +    L     VVID   ++
Sbjct: 355 LNAIARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404


>gi|207855929|ref|YP_002242580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|238690386|sp|B5QTJ7|CLPX_SALEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206707732|emb|CAR32017.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 423

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 168/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLALAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|254294161|ref|YP_003060184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
 gi|254042692|gb|ACT59487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hirschia
           baltica ATCC 49814]
          Length = 423

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 171/427 (40%), Gaps = 91/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +A+A+ N ++R    +      EL   NILLVGPTG G
Sbjct: 66  TPQEICDVLDDYVIGQAQAKRVLAVAVHNHYKRLSHASKNGNEVELAKSNILLVGPTGCG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 126 KTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV--- 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID +++  S + S      G 
Sbjct: 183 -----------------------------------YIDEID-KISRKSDNPSITRDVSGE 206

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   ++  +    
Sbjct: 207 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGA 251

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R  G+ IG               G++VS        D           
Sbjct: 252 FAGLDKV--ISDRGQGSSIGF--------------GATVS--------DPDDRRVGAVLQ 287

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P D     L+PE  GR PV   L+ L+     +ILT  ++ L+ QY+ L   E + L
Sbjct: 288 DCEPEDLVKFGLIPEFIGRLPVIATLEDLDTDSLVMILTQPKNALLKQYQRLFDMENVQL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            F++D++  +A+ A+   +     GAR L++++E +L D  F   +L+  + VVI+AE V
Sbjct: 348 TFSDDALTGVANKAIQRRT-----GARGLRSILEGILLDTMFELPNLRGIEEVVINAEVV 402

Query: 420 RLHIGDF 426
                  
Sbjct: 403 EGRAKPL 409


>gi|94310822|ref|YP_584032.1| ATP-dependent protease ATP-binding subunit ClpX [Cupriavidus
           metallidurans CH34]
 gi|166214808|sp|Q1LM63|CLPX_RALME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93354674|gb|ABF08763.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus metallidurans CH34]
          Length = 425

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 178/415 (42%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQDQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I+ R    GIG      Q       E S V  +     T+    I  G   
Sbjct: 253 AF-DGLEKVIMQRSDKTGIGF---AAQVQSKEEREVSEVLPQ-----TEPEDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    
Sbjct: 301 ------LIPELIGRLPVVATLAKLDEAALMQILIEPKNALVKQYQKLLAMEGVELEIRPA 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E+ L D+ +   + +  + VVID   +
Sbjct: 355 ALSAIARKAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTI 404


>gi|260591258|ref|ZP_05856716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           veroralis F0319]
 gi|260537123|gb|EEX19740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           veroralis F0319]
          Length = 412

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 113/419 (26%), Positives = 173/419 (41%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ +AKR +++A+ N ++R Q P  D   E+   NI++VG TG GK
Sbjct: 63  KPKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKSDDGVEIEKSNIIMVGSTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 123 TLLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVANFDVAAAERGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 179 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 203 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + IG +   VQ                     D    +       
Sbjct: 247 AFDGIERKIAQRLNAHVIGYNS--VQNVA----------------KIDKKDLMKYVLPQD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L FTE +
Sbjct: 289 LKSFGLIPEIIGRLPVLTYLSPLDREALRNILIEPKNSIVKQYIKLFEMDGIKLTFTEAA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F       K   +  +YVR  +  
Sbjct: 349 LDCIVDKAVEYK-----LGARGLRSIVESVMMDAMFEVPSRDVKEFEVTEQYVRQQLDK 402


>gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium
           japonicum USDA 110]
 gi|46576546|sp|Q89KG2|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 423

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 171/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG   + +  +     E       +  +  + +L         
Sbjct: 251 AGLEKI--ISARGRSTSIGFGAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILEAILLETMFDLPGLEGVEEVVISREVVE 401


>gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha
           JMP134]
 gi|123760219|sp|Q472D2|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia
           eutropha JMP134]
          Length = 425

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 82/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I+ R    GIG      Q       E S V  +     T+    I  G   
Sbjct: 253 AF-DGLEKVIMQRSDKTGIGF---AAQVQSKEEREVSEVLPQ-----TEPEDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    
Sbjct: 301 ------LIPELIGRLPVVATLAKLDETALVQILIEPKNALVKQYQKLLAMEGVELEIRPA 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E+ L D+ +   + +  + VVID   + 
Sbjct: 355 ALSAIARKAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDESTIN 405


>gi|73666835|ref|YP_302851.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str.
           Jake]
 gi|123773382|sp|Q3YSQ2|CLPX_EHRCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72393976|gb|AAZ68253.1| ClpX, ATPase regulatory subunit [Ehrlichia canis str. Jake]
          Length = 406

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/420 (23%), Positives = 171/420 (40%), Gaps = 82/420 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T +  P+EI   LD Y+IGQ+ +K+ +++A+ N ++R      + + E+   N+LL+GPT
Sbjct: 56  TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  +
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGII 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + +         TS TR+V  + ++   +  K I+  V+            
Sbjct: 176 Y-------IDEVDKISRKSENTSITRDVSGEGVQQALL--KVIEGTVSSVPPQGG----- 221

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                 ++          ++ D+I  + 
Sbjct: 222 ---------------------------------RKHPHQEFI-------QINTDNILFIF 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I +R  G+ +G                   + +  S N D        
Sbjct: 242 GGAFDGLDKI--IESRHRGSSMGFE----------------ANVQKVSKNKD---IFCYT 280

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  LN+S    IL + +++L+ QYK+L + + I L F
Sbjct: 281 EPEDLVKFGLIPEFVGRIPVITSLSELNESTLCRILVEPKNSLVKQYKKLFEMDNIDLQF 340

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            + ++  +A  A    +     GAR L+ ++E +L D+ F +  D+    VVI  + V  
Sbjct: 341 DDSALSEIAKKAAVRKT-----GARGLRAILEALLLDLMFESPGDVGINQVVISKKMVEE 395


>gi|240013975|ref|ZP_04720888.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI18]
 gi|240016417|ref|ZP_04722957.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA6140]
 gi|240121542|ref|ZP_04734504.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID24-1]
          Length = 414

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|240115851|ref|ZP_04729913.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID18]
 gi|254493894|ref|ZP_05107065.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|260440333|ref|ZP_05794149.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae DGI2]
 gi|268601527|ref|ZP_06135694.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291043626|ref|ZP_06569342.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
 gi|226512934|gb|EEH62279.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           1291]
 gi|268585658|gb|EEZ50334.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID18]
 gi|291012089|gb|EFE04078.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           DGI2]
          Length = 414

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|86749682|ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris HaA2]
 gi|123292611|sp|Q2IWZ3|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86572710|gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris HaA2]
          Length = 424

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 AGLEKI--ISARGRSTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVD 401


>gi|149376711|ref|ZP_01894469.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
 gi|149358950|gb|EDM47416.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola
           DG893]
          Length = 427

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 165/417 (39%), Gaps = 79/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +++A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 69  TPAEIRDTLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKAEVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   ++  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVDTGNMLFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R   + IG S      D          +T     + +    +  G    
Sbjct: 255 AGLDKV--IQERSERSSIGFSALVKSPDDTK-------NTGDIIKDVETEDLVKYG---- 301

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY++L   EG+ LDF ED+
Sbjct: 302 -----LIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+++ME  L D  +      +   VVID   +   
Sbjct: 357 LRAVARKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVIDESVISGQ 408


>gi|310766845|gb|ADP11795.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp.
           Ejp617]
          Length = 424

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMRRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
 gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella
           sp. SE45]
          Length = 421

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 169/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPREICDVLDDYVIGQMMAKRVLSVAVHNHYKRLNHSQKSSDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R  G+ +G   +  + D      G+    K    + +    +  G    
Sbjct: 251 AGLDRI--IAQRGKGSAMGFGADVREPDE----RGTGEVFK----DLEPEDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 297 -----LIPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTELSFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E +L D  F    + + T VV++ E V      
Sbjct: 352 LSAIAKRAIERKT-----GARGLRSILEGILLDTMFELPGMDDVTEVVVNEEAVTSEAKP 406

Query: 426 FP 427
             
Sbjct: 407 LM 408


>gi|254282549|ref|ZP_04957517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR51-B]
 gi|219678752|gb|EED35101.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR51-B]
          Length = 427

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 166/415 (40%), Gaps = 81/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---ADLRDELMPKNILLVGPTGVG 65
           P EI   LD+Y+IGQQ AKR +++A+ N ++R +          EL   NILLVGPTG G
Sbjct: 68  PHEIKQILDQYVIGQQRAKRVLSVAVYNHYKRLRYAPKSGGDDVELSKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V  ++   V   
Sbjct: 128 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVERAQVGIVY-- 185

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 186 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 230

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 231 ----------------------RKHPQQEFL---------------QVDTSNILFICGGA 253

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R    GIG + E   +D       +         + +    +  G   
Sbjct: 254 FAGLDKV--IKNRSEKGGIGFAAEVKSKDETRKFGET-------LSDLEPEDLVQYG--- 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+  + L  QY ++   EG+ +DF ED
Sbjct: 302 ------LIPEFVGRLPVIATLEELDEAALIQILTEPRNALTKQYAKMFDMEGVEIDFRED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            + A+A+ A+   +     GAR L++++E VL D  ++         +V+D   +
Sbjct: 356 GLRAVAEKAMERKT-----GARGLRSILEGVLLDSMYNIPSESGVAKIVVDESVI 405


>gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 429

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/419 (25%), Positives = 175/419 (41%), Gaps = 84/419 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P E+ + LD+Y+IGQ  AK+ +++A+ N +RR    P+D + EL   N+LLVGPTG GKT
Sbjct: 76  PDEMKAFLDQYVIGQDQAKKVLSVAVYNHYRRITAGPSDDQVELPKSNVLLVGPTGSGKT 135

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ + R  +     
Sbjct: 136 LLAQTLARLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDVKAAERGIIY---- 191

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I        + S TR+V  + ++   +   E                       
Sbjct: 192 ---IDEIDKISRKSESPSITRDVSGEGVQQALLRILE----------------------- 225

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                    S V   G +K                      + D +  D+  ++   G  
Sbjct: 226 ------GTVSNVPPKGGRKHP--------------------NQDFIQVDTKNILFICGGA 259

Query: 248 F--LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           F  L+    I  R     IG   +      L        ++ Y  +  D   FI  G   
Sbjct: 260 FDGLEPI--IARRTRKKVIGFGGDIASAKDLE-----KRNSLYRELVADD--FITYG--- 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                  +PE  GR PV V L SL++     IL + ++ L+ QY+ + + + + L+FT +
Sbjct: 308 ------FIPEFVGRLPVIVPLDSLDEEALVRILQEPKNALVRQYQRIFEMDRVNLEFTPE 361

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--QEKTVVIDAEYVRLH 422
           +I A+A  A+   +     GAR L+++ME ++ D+ +       Q   VVI  + V   
Sbjct: 362 AIRAIARKAMERKT-----GARALRSIMEGIMLDLMYEMPSKASQVGRVVIGEDVVNGQ 415


>gi|325128438|gb|EGC51319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis N1568]
          Length = 414

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIAWQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|253990890|ref|YP_003042246.1| ATP-dependent protease ATP-binding subunit ClpX [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782340|emb|CAQ85504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Photorhabdus
           asymbiotica]
          Length = 423

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 158/422 (37%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKRLRNGDVSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +      G+              G     K  S        +A      
Sbjct: 255 ------DKVIGQRLNTSTGI--------------GFGAKVKGESEKATEGELLAQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F  ++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRAEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L D  +    +     VV+D   V      
Sbjct: 355 LTAIAKKAMVRKT-----GARGLRSIVEGALLDTMYDLPSMDNVGKVVVDESVVNGQSAP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|325855154|ref|ZP_08171777.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola CRIS 18C-A]
 gi|325483891|gb|EGC86835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           denticola CRIS 18C-A]
          Length = 412

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAI 69
           EI   LD YIIGQ +AKR +++A+ N ++R Q P D    E+   NI++VG TG GKT +
Sbjct: 66  EIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKTLL 125

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           +R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V       
Sbjct: 126 ARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERGIV------- 178

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                +D                             +I+     SD  +           
Sbjct: 179 ----FID-----------------------------EIDKIARKSDNPSITRDVSGEGVQ 205

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             L +L    M +   K  R                   D D +H D+  ++   G  F 
Sbjct: 206 QGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGGAFD 249

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
               KI  R + + +G                S  +        D    +        + 
Sbjct: 250 GIERKIAQRLNTHTVGY--------------NSVQNVARI----DKADLMKYVLPQDLKS 291

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PEI GR PV  +L  L++   R IL D +++++ QY +L   +GI L FT+ ++D 
Sbjct: 292 FGLIPEIIGRLPVLTYLNPLDREALRRILVDPKNSIVKQYVKLFSMDGITLSFTDPALDY 351

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           + D AV        +GAR L++++E V+ D  F     + K+  +  EYVR  +  
Sbjct: 352 IVDKAVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQLDK 402


>gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp.
           ORS278]
 gi|166214759|sp|A4YVM3|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium
           sp. ORS278]
          Length = 424

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 SGLEKI--ISARGRSTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILT+ ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A++  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVSRKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 401


>gi|146307079|ref|YP_001187544.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina
           ymp]
 gi|166214806|sp|A4XTZ6|CLPX_PSEMY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145575280|gb|ABP84812.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           mendocina ymp]
          Length = 426

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 171/414 (41%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R        D EL   NILL+GPTG GKT
Sbjct: 68  PKEISAILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------ 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +       + I       +  L +      +      +  I         
Sbjct: 227 ---GGRKHPQQEFLQVDTRNILFICGGAFAGLEK------VIQARSTKGGIGFGAE---- 273

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  + ++  G  IG S   V+ D L          K+G                  
Sbjct: 274 -------VRSKQEGKKIGESLREVEPDDL---------VKFG------------------ 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L+++    ILT+ ++ L  QY +L + EG+ L+F  D++
Sbjct: 300 ----LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ++A  A+   +     GAR L++++E +L D  +     Q+   VVID   + 
Sbjct: 356 KSVAQRALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVID 404


>gi|77459918|ref|YP_349425.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           fluorescens Pf0-1]
 gi|123730994|sp|Q3K9X0|CLPX_PSEPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77383921|gb|ABA75434.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Pseudomonas fluorescens Pf0-1]
          Length = 427

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTRNILFICGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L++   I  R +  GIG + E     +    EG  V      +  D ++        
Sbjct: 253 FSGLEKV--IQNRSTKGGIGFNAE-----VRSKEEGKKVGESLREVEPDDLVKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F  D
Sbjct: 300 -----GLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E VL D  +      E   VVID   +     
Sbjct: 355 ALKSVAKRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVIDESVIEGKSK 409

Query: 425 DF 426
             
Sbjct: 410 PL 411


>gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
 gi|122417675|sp|Q1QL77|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter
           hamburgensis X14]
          Length = 424

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 SGLEKI--ISARGRTTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAIARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 401


>gi|289207759|ref|YP_003459825.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
 gi|288943390|gb|ADC71089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. K90mix]
          Length = 425

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 165/415 (39%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD Y+IGQ  AK+ +++A+ N ++R +  A   D EL   NI+L+GPTG GK
Sbjct: 66  KPREIREILDDYVIGQTSAKKILSVAVYNHYKRLEARAGKDDVELSKSNIMLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V            
Sbjct: 126 TLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDV------------ 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID +V+  S + S      G  
Sbjct: 174 -EKAENGIV-------------------------YIDEID-KVSRKSDNPSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +         +   +   Q+                  V   +I  +     
Sbjct: 207 VQQALLKLIEGTTASVPPQGGRKHPQQEFL---------------QVDTRNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R    GIG S E   +D                       ++       
Sbjct: 252 SGLEKI--IQQRAEKGGIGFSAELSSKDESK----------------SGGQWLKQLEADD 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV+  L  L++     ILT  ++ L+ QY  L + EG+ L+F +D+
Sbjct: 294 LVRYGLIPEFVGRLPVQATLDELDEDALITILTQPKNALVKQYARLFEMEGVELEFRDDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L+T+ME +L D  +    ++    VVID   +R
Sbjct: 354 LAAIAHKAMERKT-----GARGLRTIMENILLDTMYELPSMEGVSKVVIDEAVIR 403


>gi|239999117|ref|ZP_04719041.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae 35/02]
 gi|240113095|ref|ZP_04727585.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae MS11]
 gi|268594953|ref|ZP_06129120.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268599181|ref|ZP_06133348.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
 gi|268548342|gb|EEZ43760.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           35/02]
 gi|268583312|gb|EEZ47988.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           MS11]
          Length = 414

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|317047176|ref|YP_004114824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
 gi|316948793|gb|ADU68268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 167/417 (40%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVISQRVETGSGI--------------GFGATVKGKSQKASEGELLSQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A++  +     GAR L++++E  L +  +    +++ + VVID   +   
Sbjct: 355 LTAIAKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEDVEKVVIDESVIEGQ 406


>gi|237745592|ref|ZP_04576072.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229376943|gb|EEO27034.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 175/428 (40%), Gaps = 83/428 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +      D  EL   NILLVGPTG G
Sbjct: 67  TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKYYGGKNDDVELAKSNILLVGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQRGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E                     
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE--------------------- 218

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                      + +   G +K                      + D +  D+  ++   G
Sbjct: 219 --------GTMASIPPQGGRKHP--------------------NQDFIQVDTSNIMFICG 250

Query: 246 IVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D   K I  R    GIG S            E          +N +    I  G  
Sbjct: 251 GAF-DGLSKIIANRSEKGGIGFSAAVKSPSEKAGSE--------MLLNVEPEDLIKFG-- 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L ++    IL   ++ L+ QY +L++ EG  L+   
Sbjct: 300 -------LIPELIGRLPVVAVLNDLTENALIEILVKPKNALVKQYTKLLEMEGAELEIRP 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L+++ME++L D+ +    +     VVID   V    
Sbjct: 353 DALHAIARKALERKT-----GARGLRSIMEQLLLDVMYDLPTEKNVIKVVIDENTVTKES 407

Query: 424 GDFPSETD 431
                  D
Sbjct: 408 KPLLIYQD 415


>gi|126668932|ref|ZP_01739873.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
 gi|126626595|gb|EAZ97251.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17]
          Length = 427

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 108/414 (26%), Positives = 172/414 (41%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   L+ Y+IGQ  AK  +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPAEIRETLNEYVIGQDRAKVVLAVAVYNHYKRLRYGEGKADVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V+  +I  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVNTSNILFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R + + IG S E   +D +      S       + T+ ++         
Sbjct: 255 AGLEKV--IQQRSARSSIGFSAEVASKDNIK-----SAGEIIKDVQTEDLVKF------- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY++L + EG+ LDF E++
Sbjct: 301 ----GLIPEFVGRLPVVATLTELDEDALIQILTEPKNALTKQYQKLFEMEGVELDFREEA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           + A+A  A   N+     GAR L+++ME  L D  +     Q+   VV+D   +
Sbjct: 357 LRAVARKAKERNT-----GARGLRSIMEATLLDTMYQIPSEQDVCKVVVDESVI 405


>gi|7594817|dbj|BAA94669.1| ATPase subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAXAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R            V+       EG  +S     +  + ++         
Sbjct: 252 AGLDKV--IANRVETGSGIGFGATVKAKSDKASEGELLS----QVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 299 ----GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
 gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus
           trichosporium OB3b]
          Length = 420

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 171/422 (40%), Gaps = 90/422 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTGVGK
Sbjct: 64  TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 124 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YVDEID-KISRKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+                  V   +I  +     
Sbjct: 205 VQQALLKIMEGTIASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I +R  G  IG               G++V                   F  
Sbjct: 250 AGLEKI--ISSRGRGTSIGF--------------GATVQAPDER--------RTGDIFRH 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            +P D     L+PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E   L 
Sbjct: 286 VQPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKRILTEPKNALVKQYQRLFEMESTELT 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ++++ ++A  A+  ++     GAR L+++ME +L D  F    L+  + VVI  E V 
Sbjct: 346 FQDEALSSVARKAIERHT-----GARGLRSIMEGILLDTMFELPGLEGVEQVVIGPEVVE 400

Query: 421 LH 422
             
Sbjct: 401 GK 402


>gi|126727091|ref|ZP_01742928.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126703519|gb|EBA02615.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 165/415 (39%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        + EL   NI+L+GPTG GK
Sbjct: 65  TPKEICEVLDDYVIGQGHAKRVLSVAVHNHYKRLNHAGKGSEIELAKSNIMLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  V     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFVCGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G+ IG   +        + E           + +    +  G    
Sbjct: 251 AGLDKI--IAQRGKGSSIGFGADVRDEATKGIGET--------LKDLEPEDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+      IL++ ++ L+ QY+ L + E   L FT+D+
Sbjct: 297 -----LIPEFVGRLPVIATLEDLDLDALVTILSEPKNALVKQYQRLFELEDAELKFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+   A+   +     GAR L+++ME +L D  F    L+    VV++ E V 
Sbjct: 352 LKAIGSRAIERKT-----GARGLRSIMEDILLDTMFDLPGLENVSEVVVNEEAVN 401


>gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2866]
          Length = 411

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AF-SGLDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|123443341|ref|YP_001007315.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|6225174|sp|O33873|CLPX_YEREN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215219|sp|A1JNN1|CLPX_YERE8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2580495|gb|AAC45783.1| ClpX [Yersinia enterocolitica]
 gi|122090302|emb|CAL13168.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 162/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIGQRINTGSGI--------------GFGATVKGKSEKATEGELLRQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    ++  + VV+D   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVVDESVI 403


>gi|22124935|ref|NP_668358.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           KIM 10]
 gi|45440624|ref|NP_992163.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808642|ref|YP_652558.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Antiqua]
 gi|108811099|ref|YP_646866.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Nepal516]
 gi|145600051|ref|YP_001164127.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Pestoides F]
 gi|149364998|ref|ZP_01887033.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|153950055|ref|YP_001402051.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419302|ref|YP_001607419.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Angola]
 gi|165926541|ref|ZP_02222373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936053|ref|ZP_02224623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011049|ref|ZP_02231947.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212940|ref|ZP_02238975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398781|ref|ZP_02304305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421680|ref|ZP_02313433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423157|ref|ZP_02314910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025450|ref|YP_001721955.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186894327|ref|YP_001871439.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930186|ref|YP_002348061.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           CO92]
 gi|229838760|ref|ZP_04458919.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896086|ref|ZP_04511256.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|229899328|ref|ZP_04514471.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901328|ref|ZP_04516450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|270489514|ref|ZP_06206588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294504887|ref|YP_003568949.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|21263471|sp|Q8ZC66|CLPX_YERPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122979462|sp|Q1C4K9|CLPX_YERPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123246670|sp|Q1CL64|CLPX_YERPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215220|sp|A4TPE2|CLPX_YERPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009021|sp|A7FLC3|CLPX_YERP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687254|sp|A9QZQ2|CLPX_YERPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688402|sp|B1JHS0|CLPX_YERPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691418|sp|B2K6V8|CLPX_YERPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21957774|gb|AAM84609.1|AE013706_4 ATP-dependent specificity component of clpP serine protease,
           chaperone [Yersinia pestis KIM 10]
 gi|45435481|gb|AAS61040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108774747|gb|ABG17266.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Nepal516]
 gi|108780555|gb|ABG14613.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Antiqua]
 gi|115348797|emb|CAL21751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CO92]
 gi|145211747|gb|ABP41154.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Pestoides F]
 gi|149291411|gb|EDM41485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|152961550|gb|ABS49011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352117|gb|ABX86065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis Angola]
 gi|165916198|gb|EDR34805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921469|gb|EDR38666.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990049|gb|EDR42350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205727|gb|EDR50207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960599|gb|EDR56620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051285|gb|EDR62693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057327|gb|EDR67073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751984|gb|ACA69502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186697353|gb|ACC87982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681257|gb|EEO77351.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|229687730|gb|EEO79803.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695126|gb|EEO85173.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701009|gb|EEO89038.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|262362953|gb|ACY59674.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262366872|gb|ACY63429.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270338018|gb|EFA48795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294355346|gb|ADE65687.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|320016342|gb|ADV99913.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 423

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 166/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 251

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+   + +   SG G G   +G           S V  +      D I F       
Sbjct: 252 AGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPE------DLIKF------- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 299 -----GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D  +    +   + VV+D   +
Sbjct: 354 ALTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVI 403


>gi|59801072|ref|YP_207784.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|293398934|ref|ZP_06643099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
 gi|75356149|sp|Q5F8W5|CLPX_NEIG1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59717967|gb|AAW89372.1| putative ATP-dependent Clp protease ATP-binding subunit [Neisseria
           gonorrhoeae FA 1090]
 gi|291610348|gb|EFF39458.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           gonorrhoeae F62]
          Length = 414

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V ++R   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKARHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|283479305|emb|CAY75221.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           pyrifoliae DSM 12163]
          Length = 424

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKXKSEKATEGELLAQVEPEX 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|240125888|ref|ZP_04738774.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-92-679]
 gi|268684487|ref|ZP_06151349.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624771|gb|EEZ57171.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 414

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V ++R   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKARHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|225023958|ref|ZP_03713150.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
 gi|224942983|gb|EEG24192.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC
           23834]
          Length = 418

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 180/427 (42%), Gaps = 80/427 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EIVS L++++IGQ+ AK+ +A+A+ N ++R + P +  + EL   NILL+GPTG GK
Sbjct: 60  TPAEIVSNLNQHVIGQEQAKKVLAVAVYNHYKRLRYPKEGDNVELAKSNILLIGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 120 TLLAQSLARRLDVPFVMADATTLTEAGYVGEDVEQIITKLLGNCDFNVEKAQNGIVY--- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 177 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 221

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + D +  D+  ++   G 
Sbjct: 222 ---------------------RKHP-----------------NQDFIQVDTTNILFICGG 243

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K    +   +  I       
Sbjct: 244 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDEDADVTELFEIVE--PED 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + EG+ L     +
Sbjct: 288 LIKFGLIPELIGRLPVIATLAELDEEALISILTEPKNALVKQYQTLFEMEGVELKVQPSA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYVRLHIG 424
           + ++A +A+   +     GAR L++++ER L +  F   D++E  KTVVID   +  +  
Sbjct: 348 LRSIAKLAMQRKT-----GARGLRSIVERALLETMFRLPDIKEQVKTVVIDETVINDNCQ 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PKLLTAD 409


>gi|323343309|ref|ZP_08083536.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis
           ATCC 33269]
 gi|323095128|gb|EFZ37702.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis
           ATCC 33269]
          Length = 414

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 179/425 (42%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P++I + LD+Y+IGQ +AKR +++++ N ++R Q P D    E+   NI++VG
Sbjct: 60  KLKKVPKPKDIKAYLDQYVIGQDEAKRYLSVSVYNHYKRLQQPKDENGVEIEKSNIIMVG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 120 STGTGKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERG 179

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 180 IV-----------FID-----------------------------EIDKIARKSDNPSIT 199

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 200 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTKNI 243

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G                S  + +      D    + 
Sbjct: 244 LFICGGAFDGIERKIAQRLNTHVVGY--------------NSVQNVR----KIDKGDLMK 285

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L
Sbjct: 286 YILPQDLKSFGLIPEIIGRLPVLTYLNPLDREALRRILVEPKNSIVKQYVKLFEMDGIKL 345

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FTE+++D + D AV       ++GAR L++++E ++ D  F     + K   +  EY +
Sbjct: 346 SFTEEALDYIVDKAVE-----YELGARGLRSIVESIMMDAMFEIPSKRLKNFEVTREYTQ 400

Query: 421 LHIGD 425
             +  
Sbjct: 401 EELDK 405


>gi|258621303|ref|ZP_05716337.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
 gi|258586691|gb|EEW11406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
          Length = 426

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 169/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK++ R    G G+              G+ V +K  S  T   LF       
Sbjct: 257 -------DKVIERRVATGTGIGF------------GADVRSKDNS-KTLSELFTQVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F ED
Sbjct: 297 LVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 356 ALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406


>gi|302878842|ref|YP_003847406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
 gi|302581631|gb|ADL55642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella
           capsiferriformans ES-2]
          Length = 416

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 175/424 (41%), Gaps = 79/424 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I + LD Y+IGQ+ AKR +++A+ N ++R +   D   EL   NILLVGPTG GKT 
Sbjct: 66  PKDICATLDEYVIGQERAKRILSVAVYNHYKRLKCNTDDGVELAKSNILLVGPTGSGKTL 125

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  +      
Sbjct: 126 LAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYNVEKAQRGIIYV---- 181

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              + I          S TR+V  + ++   +      IE    S               
Sbjct: 182 ---DEIDKISRKSDNPSITRDVSGEGVQQALLKL----IEGTKASIPPQGGRKHPNTEFL 234

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
            ++ + +                    +  L +      +  +   + SI       I  
Sbjct: 235 QVDTTNIL-------------FICGGAFDGLEK------VIRNRSSKASIG--FGATIRS 273

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           +DE      +       V  E +               K+G I                 
Sbjct: 274 VDE-----RKTGETLRDVEPEDL--------------VKFGLI----------------- 297

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L+ L+++  + ILT+ ++ L  QYK+L + EG+ L+F ED++ 
Sbjct: 298 -----PEFVGRLPVIATLEELDEAAMKQILTEPKNALTKQYKKLFEMEGVELEFREDALL 352

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
           A+A  A+   +     GAR L++++E+ L D+ F    +     VV+D   V   I    
Sbjct: 353 AIAKKALARKT-----GARGLRSILEQALLDVMFDLPSMDNVSKVVLDDSGVEGEIKPII 407

Query: 428 SETD 431
              D
Sbjct: 408 VYAD 411


>gi|206579207|ref|YP_002240082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288936833|ref|YP_003440892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|290510111|ref|ZP_06549481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
 gi|238066657|sp|B5Y0U1|CLPX_KLEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206568265|gb|ACI10041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288891542|gb|ADC59860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|289776827|gb|EFD84825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
          Length = 424

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 164/422 (38%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    + + + VVID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMDDVEKVVIDESVIEGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|85704730|ref|ZP_01035831.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
 gi|85670548|gb|EAQ25408.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217]
          Length = 422

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 166/414 (40%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PR+I   LD Y+IGQ  AK+ +++A+ N ++R         EL   NILL+GPTG GKT 
Sbjct: 66  PRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKTL 125

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V      
Sbjct: 126 LAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV------ 179

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                                              E+D ++   S + S      G  V 
Sbjct: 180 --------------------------------YIDEVD-KITRKSENPSITRDVSGEGVQ 206

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  +   V     +   +   Q+                  V   +I  +       
Sbjct: 207 QALLKLMEGTVAAVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFAG 251

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           LD+   I  R  G+ +G   +    D   +          G I TD              
Sbjct: 252 LDKI--IAQRGKGSAMGFGADVRDNDARGI----------GEIFTDL-------EPEDLL 292

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + EG  L FT+D++ 
Sbjct: 293 KFGLIPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFELEGAQLSFTDDALK 352

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRL 421
           A++  A+   +     GAR L++++E +L D  F    ++  + V+++ E V  
Sbjct: 353 AISKRAIARKT-----GARGLRSILEDILLDTMFDLPSMEHVEEVLVNEEAVNS 401


>gi|238764859|ref|ZP_04625800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
 gi|238696966|gb|EEP89742.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
          Length = 423

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 162/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVIGQRINTGTGI--------------GFGATVKGKSEKATEGELLSQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    +   + VV+D   +
Sbjct: 355 LTAIAKKAMVRKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVI 403


>gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 415

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 170/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 60  TPQEICNVLDSYVIGQFHAKRVLSVAVHNHYKRLNHATKNNDVELAKSNILLVGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 120 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 175

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 176 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 200

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 201 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 245

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R  G+ IG S      D     E  +     G    D + F        
Sbjct: 246 AGLEKI--ISRRGKGSSIGFSARVTGPD-----ERRTGDILRGVEPEDLLKF-------- 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    ILT+ ++ ++ QY+ L + E + L  T D+
Sbjct: 291 ----GLIPEFIGRLPVIATLEDLDEAALVQILTEPKNAIVKQYQRLFEMEDVKLTITLDA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A++  A+   +     GAR L+++ME +L D  +    L+  + VVI  E V 
Sbjct: 347 LRAISRKAIERKT-----GARGLRSIMEGILLDTMYDLPTLKGVEEVVIGPEVVE 396


>gi|304311291|ref|YP_003810889.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
 gi|301797024|emb|CBL45237.1| ATP-dependent Clp protease ATP-binding subunit [gamma
           proteobacterium HdN1]
          Length = 434

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 177/422 (41%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLV 59
           SP+EI + LD Y+IGQ  AK+ +A+A+ N ++R +           +   EL   NILL+
Sbjct: 69  SPKEIKTILDDYVIGQDRAKKILAVAVYNHYKRIRSGNAKSAKGRGEGDIELSKSNILLI 128

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++ 
Sbjct: 129 GPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQV 188

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I          S TR+V  + ++   +  K I+  VA         
Sbjct: 189 GIVY-------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---- 235

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +   +         I       +  L +      +  +   +  I 
Sbjct: 236 -----------GGRKHPQQEFLQVDTTNILFICGGAFAGLEK------VIQNRSTKSGIG 278

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            V +           + +++    +G + + V+ + L          K+G          
Sbjct: 279 FVAS-----------VKSKEDNINVGDTLKEVEPEDL---------VKFG---------- 308

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L+ L+++    ILT+  ++L  QY++L + E I 
Sbjct: 309 ------------LIPEFVGRLPIIATLEELDEAALVRILTEPRNSLTKQYQKLFEMEDIE 356

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           LDF  D++ A+A  A+   +     GAR L++++E VL D  + A  L+  T VV+D   
Sbjct: 357 LDFRTDALHAVAKKALERKT-----GARGLRSILENVLLDTMYDAPSLEGVTKVVVDEAV 411

Query: 419 VR 420
           ++
Sbjct: 412 IK 413


>gi|330829917|ref|YP_004392869.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas
           veronii B565]
 gi|328805053|gb|AEB50252.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas
           veronii B565]
          Length = 424

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 170/415 (40%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ+ AK+ +A+A+ N ++R +   +    EL   NILL+GPTG GK
Sbjct: 66  TPHQIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSGENSGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+  +V             
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQRSVK------------ 264

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                         G GIG   E   +D    +  +    +                   
Sbjct: 265 --------------GTGIGFGAEVKSKDAKATLSETFAKVE----------------PED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++S    IL + ++ L  QY  L   EG+ L+F +D+
Sbjct: 295 LIKYGLIPEFIGRLPVVATLTELDESALIQILKEPKNALTKQYAALFDLEGVELEFRDDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++A+A  A+   +     GAR L++++E VL D  +    L+    VVID   ++
Sbjct: 355 LNAIARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404


>gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
 gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
          Length = 426

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 166/424 (39%), Gaps = 81/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   +    
Sbjct: 355 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVINDES 409

Query: 424 GDFP 427
               
Sbjct: 410 SPLL 413


>gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
 gi|254763855|sp|B8EIL3|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella
           silvestris BL2]
          Length = 421

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 164/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R  G  IG               G++V       +              
Sbjct: 251 AGLEKI--ISTRGKGTSIGF--------------GATVQAPD---DRRTGEIFRKVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++   + ILT+ ++ L+ QY+ L + E   L F +++
Sbjct: 292 LLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++ +A  A+   +     GAR L+++ME +L D  F    L   + VVI  + V   
Sbjct: 352 LNVVAKKAIERRT-----GARGLRSIMEGILLDTMFDLPGLDSVEQVVIGPDVVEGK 403


>gi|220934116|ref|YP_002513015.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|254763871|sp|B8GNT9|CLPX_THISH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219995426|gb|ACL72028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 425

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 112/415 (26%), Positives = 174/415 (41%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+ +A+A+ N ++R +   +    EL   NILL+GPTG GK
Sbjct: 67  KPHEIKKILDEYVIGQDRAKKILAVAVYNHYKRLEARNSKDEVELAKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V    
Sbjct: 127 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKADNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +         I   V   +  L           D V RD     E  GI
Sbjct: 227 ----GGRKHPQQEFLQVDTHNILFIVGGAFAGL-----------DKVIRD---RTEKGGI 268

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     K+ +++    +  +  GV+ + L          KYG                 
Sbjct: 269 GFSA---KVKSKEEKGPVSRTLSGVEPEDL---------IKYG----------------- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ L  QY +L + EG+ ++F ED+
Sbjct: 300 -----LIPEFVGRLPVVATLEELDEDALIQILTEPKNALTKQYGKLFEMEGVDIEFREDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L+T++E+VL D  +     +    VVID   +R
Sbjct: 355 LRAVAAKAMERKT-----GARGLRTILEQVLLDTMYDLPSTENVSKVVIDDAVIR 404


>gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittEE]
 gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittEE]
          Length = 411

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|317492908|ref|ZP_07951332.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919030|gb|EFV40365.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 423

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 165/417 (39%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +A      
Sbjct: 255 ------DKVIGQRVNTGTGI--------------GFGATVKALSEKATEGELLAQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLRELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E  L +  +    ++  + VV+D   +   
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLETMYDLPSMENVEKVVVDENVIEGQ 406


>gi|262369922|ref|ZP_06063249.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
 gi|262314961|gb|EEY96001.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046]
          Length = 438

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 181/434 (41%), Gaps = 85/434 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +        D   E+   NILLVGPT
Sbjct: 64  KPHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKATHGGHKHDDAVEIAKSNILLVGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ +ARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  +
Sbjct: 124 GSGKTLLAQTMARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGII 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  VA            
Sbjct: 184 Y-------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG----- 229

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+             I +DT    +I  + 
Sbjct: 230 -------------------------RKHPQQE------------FIQIDT---SNILFIC 249

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN-TDHILFIAS 301
                 L++   +  R    GIG + E  ++D     EG  +S  +  +  TD + F   
Sbjct: 250 GGAFSGLEKI--VQQRQEKGGIGFTAEVKKKD-----EGKKLSDLFRQVEATDLVKF--- 299

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L 
Sbjct: 300 ---------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQHLFDMENVDLV 350

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F + ++ A+A  A++ N+     GAR L++++E  L +  +      +  TVV++ + + 
Sbjct: 351 FEDSALRAVAKKALDRNT-----GARGLRSILENTLLETMYDLPSRTDVGTVVVNEDVIN 405

Query: 421 LHIGDFPSETDMYH 434
                      +  
Sbjct: 406 GTAAPLFKPERLPR 419


>gi|284054391|ref|ZP_06384601.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira
           platensis str. Paraca]
 gi|291569894|dbj|BAI92166.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira
           platensis NIES-39]
          Length = 445

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 170/426 (39%), Gaps = 83/426 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNIL 57
           L     PREI + LD ++IGQ DAK+ +++A+ N ++R          D + EL   NIL
Sbjct: 79  LNQIPKPREIKAYLDHHVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNIL 138

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E+
Sbjct: 139 LIGPTGCGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEA 198

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           +R  V                                         EID ++A  S + S
Sbjct: 199 QRGIV--------------------------------------YIDEID-KIARKSENPS 219

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G  V    L  L         +   +   Q C                 +   +
Sbjct: 220 ITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCI---------------QIDTSN 264

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  V     V L++   I  R     +G  R G +                   +T+ + 
Sbjct: 265 ILFVCGGAFVGLEKI--IEQRSGKKSMGFVRSGEEVTP-------------EQKDTEALK 309

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
            I     +      L+PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + 
Sbjct: 310 GIE---PNDLVKFGLIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDN 366

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L+F  D+I A+A  A    +     GAR L+ ++E ++ D+ +     ++ K  ++  
Sbjct: 367 VHLEFEPDAIQAIAREAFRRKT-----GARALRGIVEELMLDVMYELPSRKDVKRCLVTQ 421

Query: 417 EYVRLH 422
             V   
Sbjct: 422 AMVEKR 427


>gi|71907347|ref|YP_284934.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|123774411|sp|Q47FB7|CLPX_DECAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71846968|gb|AAZ46464.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB]
          Length = 420

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 175/415 (42%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +PREI S LD+Y+IGQ+ AKR +++A+ N ++R +  A      EL   NILL+GPTG G
Sbjct: 63  TPREISSILDQYVIGQEVAKRILSVAVYNHYKRLRHTAKNAGDVELSKSNILLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V ++++  V   
Sbjct: 123 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY-- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  +                              G 
Sbjct: 181 -----IDEIDKISRKSDNPSITRDVSGE------------------------------GV 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +L L E  +  +     +K                     + D V  D+  ++   G
Sbjct: 206 QQALLKLIEGTTASIPPQGGRKHP-------------------NQDFVQVDTTNILFICG 246

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F      I +R    GIG   E   +D          +     ++ +    I  G   
Sbjct: 247 GAFAGLEKVIQSRSERGGIGFGAEVKSKDDGK-------AVGKILLDAEPEDLIKFG--- 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L +S    ILT+ ++ L+ QY++L   E + L+    
Sbjct: 297 ------LIPELIGRLPVVATLQELEESALVQILTEPKNALVKQYQKLFSMEDVELEIRPT 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D  +    ++  + VVID   +
Sbjct: 351 ALSAIAKKALARKT-----GARGLRSILEHALLDTMYELPGMESVEKVVIDENTI 400


>gi|237807856|ref|YP_002892296.1| ATP-dependent protease ATP-binding subunit ClpX [Tolumonas auensis
           DSM 9187]
 gi|259491271|sp|C4LDB4|CLPX_TOLAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237500117|gb|ACQ92710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tolumonas
           auensis DSM 9187]
          Length = 426

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 103/427 (24%), Positives = 174/427 (40%), Gaps = 78/427 (18%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGP 61
           +T   +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +  +     EL   NILL+GP
Sbjct: 63  MTELPTPHKIRAHLDDYVIGQDLAKKVLAVAVYNHYKRLRSGSSADGVELGKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  
Sbjct: 123 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGI 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V         + I          S TR+V  + ++   +  K I+  +A           
Sbjct: 183 VY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ------ 227

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                       +   +        KI       +  L                      
Sbjct: 228 ---------GGRKHPQQEFLQVDTSKILFICGGAFAGL---------------------- 256

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                      DK+V + +  G G+   G   ++    +  ++S  +  +  + ++    
Sbjct: 257 -----------DKVVEQRTAQGAGI---GFNAEVKSKDKKVTLSESFAKVEPEDLV---- 298

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   L  L+++    IL + ++ L  QY+ L K EG  L+
Sbjct: 299 -------KYGLIPEFIGRLPVVATLTELDENALIQILVEPKNALTKQYQALFKLEGAELE 351

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F ED++ A+A  A+   +     GAR L++++E VL D  +    ++    VV+D   + 
Sbjct: 352 FREDALRAIAHKAMERKT-----GARGLRSIVEGVLLDTMYDLPSVENVSKVVVDEHVIN 406

Query: 421 LHIGDFP 427
                  
Sbjct: 407 GETQPIM 413


>gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           129PT]
 gi|122945369|sp|Q0I4F0|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           somnus 129PT]
          Length = 414

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/423 (23%), Positives = 178/423 (42%), Gaps = 77/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +   +  + EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE +++ L+      + ++++  +    
Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIEKAQQGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K ++  VA                
Sbjct: 181 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLVEGTVASIPPQGG--------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  V    I  +     
Sbjct: 226 ---------------------RKHPQQE---------------MLRVDTSKILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R +  G G+   G   D+    E  S++  +  +  D ++         
Sbjct: 250 AGLDKI--IEKRTNTGGKGI---GFGADVRIDEEKVSLTELFKQVEPDDLMKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E I L+FT+++
Sbjct: 298 ----GLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E +L D  +    ++  + V+++ E V  +   
Sbjct: 354 LIAMAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTENKAP 408

Query: 426 FPS 428
              
Sbjct: 409 VLK 411


>gi|113970829|ref|YP_734622.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|114048054|ref|YP_738604.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
 gi|123131263|sp|Q0HTK8|CLPX_SHESR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123324884|sp|Q0HHA2|CLPX_SHESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113885513|gb|ABI39565.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-4]
 gi|113889496|gb|ABI43547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp.
           MR-7]
          Length = 426

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        SG G G   +G +         S V  +                   
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLV---------------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED+
Sbjct: 298 --KYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    ++     V+D   V 
Sbjct: 356 LKAIAHKAMSRKT-----GARGLRSIVEGILLDTMYDIPSIEGVVKAVVDESVVN 405


>gi|114321436|ref|YP_743119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311053|sp|Q0A6A8|CLPX_ALHEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114227830|gb|ABI57629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 425

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 174/414 (42%), Gaps = 79/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD +++GQ+ AK+ +++A+ N ++R +  +   + EL   NILL+GPTG GKT
Sbjct: 68  PHEINQVLDEFVVGQEHAKKVLSVAVYNHYKRLEAGSRKDEVELSKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++++  V     
Sbjct: 128 LLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+   A                 
Sbjct: 184 ---IDEIDKVSRKADNPSITRDVSGEGVQQALL--KLIEGTTASVPPQGG---------- 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V    I  +      
Sbjct: 229 --------------------RKHPQQEFL---------------QVDTGGILFICGGAFA 253

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R    GIG S E   +D    V  +         + +    +  G     
Sbjct: 254 GLDKV--IQDRSEKGGIGFSAEIKSKDEKRSVGET-------LQDVEPEDLVKYG----- 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++     IL+  ++ L+ QY++L + EG+ L+F ED++
Sbjct: 300 ----LIPEFVGRLPVVATLEELDEQALVEILSAPKNALVKQYQKLFEMEGVELEFREDAL 355

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A++  +     GAR L+T++E VL D  +    ++  + VV+D   +R
Sbjct: 356 RAVARKAMDRKT-----GARGLRTILEHVLLDTMYDLPSMENVEKVVVDDAVIR 404


>gi|271499598|ref|YP_003332623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech586]
 gi|270343153|gb|ACZ75918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech586]
          Length = 424

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 166/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   ++   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNSDSNNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ + +  G G+              G + + K  S        +       
Sbjct: 255 ------DKVIEQRTDTGRGI--------------GFNATVKGVSQKATEGELLGQVEPGD 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLKELDEDALIQILREPKNALTKQYQALFKLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L +  +    L+    VV+D   +      
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVVDESVISEQTEP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|166031008|ref|ZP_02233837.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
 gi|166029275|gb|EDR48032.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC
           27755]
          Length = 423

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 172/417 (41%), Gaps = 79/417 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 70  LKPEEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRIMAQRDLGVELNKSNILMLGPTGCGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 130 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIERAEYGIIY--- 186

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +    ++  VA+               
Sbjct: 187 ----LDEIDKITRKSENPSITRDVSGEGVQQALLKI--VEGTVANVPPQGGRKHPHQE-- 238

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                        +       I       +  +     D++I+   + + SI        
Sbjct: 239 -------------LIQIDTTNILFICGGAFEGI-----DKIIEK-RIDQKSIGFNAEIAE 279

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D+ DK++A+     +                      K+G                 
Sbjct: 280 KHEDDVDKLLAQVLPQDL---------------------VKFG----------------- 301

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L+      ILT+ ++ ++ QY++L++ +G+ L F + +
Sbjct: 302 -----LIPELVGRVPVTVSLEMLDHDALIRILTEPKNAIVKQYQKLLELDGVKLVFDDSA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ +AD+++   +     GAR L+ +ME  + DI + A  D   KT  I  + V   
Sbjct: 357 LNEIADISLKRKT-----GARGLRAIMENTMMDIMYRAPSDETLKTCRITGDVVTGK 408


>gi|117620337|ref|YP_856543.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|226706638|sp|A0KJU2|CLPX_AERHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117561744|gb|ABK38692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 424

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 169/415 (40%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRSGSESGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+  +V             
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQRSVK------------ 264

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                         G GIG   E   +     +  S    +                   
Sbjct: 265 --------------GTGIGFGAEVKSKSAKATLSESFAKVE----------------PED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L+F +D+
Sbjct: 295 LIKYGLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++A+A  A+   +     GAR L++++E VL D  +    L     VVID   ++
Sbjct: 355 LNAIARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404


>gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Haemophilus influenzae 10810]
          Length = 411

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AF-SGLDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|258625373|ref|ZP_05720270.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|262166051|ref|ZP_06033788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
 gi|262171084|ref|ZP_06038762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|258582364|gb|EEW07216.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|261892160|gb|EEY38146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|262025767|gb|EEY44435.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
          Length = 426

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 166/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 355 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406


>gi|262042474|ref|ZP_06015633.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040178|gb|EEW41290.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 424

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 165/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           7P49H1]
 gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae R2846]
          Length = 411

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|91775763|ref|YP_545519.1| ATP-dependent protease ATP-binding subunit [Methylobacillus
           flagellatus KT]
 gi|122985527|sp|Q1H1F9|CLPX_METFK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91709750|gb|ABE49678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacillus flagellatus KT]
          Length = 421

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R +      D E+   NIL++GPTG GK
Sbjct: 65  TPKEICAILDQYVIGQTQAKKNLAVAVYNHYKRLEQGGQKDDVEIAKSNILVIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE I++ L+      V +++R  V    
Sbjct: 125 TLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + V  D+  ++   G 
Sbjct: 227 ---------------------RKHP-----------------NQEFVQLDTTNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F D  +KI+ R S  G       V+        G  +       + +    I  G    
Sbjct: 249 AF-DGLEKIIRRRSEKGGIGFGAEVKSKEDARAIGEVLR------DVEPEDLIKFG---- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P    L+SL++     IL + ++ L  QY +L K EG+ L+F E +
Sbjct: 298 -----LIPEFVGRLPAIATLESLDEDALVTILVEPKNALTKQYIKLFKMEGVDLEFREAA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +  +A  A+   +     GAR L+++ME  L +I +    +   + VV+D   ++
Sbjct: 353 LRMIAKKALERKT-----GARGLRSIMEHALLEIMYDLPSIPNLRKVVVDEGVIK 402


>gi|91977363|ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB5]
 gi|123762673|sp|Q135W8|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91683819|gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB5]
          Length = 424

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 AGLEKI--ISARGRSTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVD 401


>gi|194289505|ref|YP_002005412.1| ATP-dependent protease ATP-binding subunit clpx [Cupriavidus
           taiwanensis LMG 19424]
 gi|238692761|sp|B3R4W2|CLPX_CUPTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193223340|emb|CAQ69345.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Cupriavidus taiwanensis LMG 19424]
          Length = 425

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 179/416 (43%), Gaps = 82/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I+ R    GIG      Q       + S V  +     T+    I  G   
Sbjct: 253 AF-DGLEKVIMQRSDKTGIGF---AAQVKSKEERDVSEVLPQ-----TEPEDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L+  EG+ L+    
Sbjct: 301 ------LIPELIGRLPVVATLAKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPG 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E+ L D+ +   + +  + VVID   + 
Sbjct: 355 ALSAIARKAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN 405


>gi|56551845|ref|YP_162684.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761833|ref|ZP_04759919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260752593|ref|YP_003225486.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|61211394|sp|Q5NNY7|CLPX_ZYMMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56543419|gb|AAV89573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241373747|gb|EER63307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258551956|gb|ACV74902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 422

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 161/426 (37%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD+Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPQEICTILDQYVIGQSKAKRVLSVAVHNHYKRLNHGGKDADVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAETLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KITRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +         +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTTASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R  G  IG        D                                
Sbjct: 251 AGLDRI--IADRLEGKSIGFGAHVAAPDERR----------------------TGEILQE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++S    ILT+ ++ L+ QY++L + E   L+
Sbjct: 287 CEPEDLLKFGLIPEFVGRLPVLATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FTED++ A+A   +   +     GAR L++++E +L D  F    L+    +++D +   
Sbjct: 347 FTEDALAAIAKKGIERKT-----GARGLRSILEGILLDTMFELPSLEGVSEIIVDKDVAE 401

Query: 421 LHIGDF 426
                 
Sbjct: 402 GKKEPV 407


>gi|258542725|ref|YP_003188158.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633803|dbj|BAH99778.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636862|dbj|BAI02831.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639915|dbj|BAI05877.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642971|dbj|BAI08926.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646026|dbj|BAI11974.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649079|dbj|BAI15020.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652066|dbj|BAI18000.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655123|dbj|BAI21050.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO
           3283-12]
          Length = 421

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 175/439 (39%), Gaps = 99/439 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R  Q+      E+   NILL+GPTG GK
Sbjct: 64  TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KISKKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   ++  +     
Sbjct: 205 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G  IG   +    D                              H 
Sbjct: 250 AGLDKI--ISARGKGTNIGFGADVRAPDERK----------------------TGEILHD 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + E + L+
Sbjct: 286 VEPEDLMKFGLIPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMENVQLN 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE--- 417
           FT+D++ A+AD A+   +     GAR L++++E +L    F    L+  + VV++ +   
Sbjct: 346 FTDDALKAIADRAIVRKT-----GARGLRSILESILMSTMFDLPGLENVEEVVVNRDVAE 400

Query: 418 ------YVRLHIGDFPSET 430
                 YV     + P+E 
Sbjct: 401 GKASPVYVYGKKKEIPAEQ 419


>gi|327480674|gb|AEA83984.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri DSM 4166]
          Length = 426

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 107/419 (25%), Positives = 170/419 (40%), Gaps = 89/419 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        + EL   NILL+GPTG GKT
Sbjct: 68  PKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V   +I  +      
Sbjct: 229 --------------------RKHPQQEFL---------------QVDTRNILFICGGAFA 253

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I +R +  GIG + E   +D    +                       A    
Sbjct: 254 GLEKV--IQSRSTQGGIGFNAEVRSKDPGKKI---------------------GEALRAV 290

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + EG+ L+F
Sbjct: 291 EPDDLVKFGLIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEF 350

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
             D++ A+A  A+   +     GAR L++++E VL D  +     ++   VVID   + 
Sbjct: 351 RPDALKAVAHRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVIDESVIE 404


>gi|326568951|gb|EGE19020.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC1]
          Length = 438

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|326561828|gb|EGE12163.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 7169]
 gi|326563374|gb|EGE13639.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 12P80B1]
 gi|326571925|gb|EGE21930.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC8]
          Length = 438

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|238788009|ref|ZP_04631805.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
 gi|238723957|gb|EEQ15601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
          Length = 423

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 161/414 (38%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIEQRINTGSGI--------------GFGATVKGKSEKATEGELLRQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    +   + VV+D   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVI 403


>gi|163815264|ref|ZP_02206641.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
 gi|158449459|gb|EDP26454.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 105/414 (25%), Positives = 166/414 (40%), Gaps = 79/414 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI S LD Y+IGQ++AK+ +A+A+ N ++R     D   EL   NIL+VGPTG GK
Sbjct: 83  LKPKEIKSFLDEYVIGQEEAKKVLAVAVYNHYKRILAQKDFDVELQKSNILMVGPTGSGK 142

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 143 TYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDI------------ 190

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S ++S      G  
Sbjct: 191 -ERAEHGII-------------------------YIDEID-KITKKSENVSITRDVSGEG 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 224 VQQALLKIIEGTVASVPPQGGRKHPHQE------------LIQIDT---TNILFICGGAF 268

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R     IG + E V++                    D    +     H 
Sbjct: 269 EGLEKI--IENRVGQKSIGFNAEVVEQSEQ-----------------DIGQLLKQVMPHD 309

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L  L++     ILT+  S +  QYK+L + +G+ L+  +D+
Sbjct: 310 FVKYGLIPEFVGRVPVAVTLDLLDEDALVRILTEPRSAICKQYKKLFELDGVELEIEDDA 369

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           +  +A  A+   +     GAR L+ +ME    ++ +           VI  + +
Sbjct: 370 LREIAKEAMERKT-----GARGLRAIMENATLNLMYEIPSNPAINKCVITKDVI 418


>gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae PittGG]
 gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           3655]
 gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittGG]
          Length = 411

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|117921101|ref|YP_870293.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           ANA-3]
 gi|166215205|sp|A0KYL8|CLPX_SHESA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117613433|gb|ABK48887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. ANA-3]
          Length = 426

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        SG G G   +G +         S V  +                   
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLV---------------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED+
Sbjct: 298 --KYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    ++     V+D   V 
Sbjct: 356 LKAIAHKAMSRKT-----GARGLRSIVEGILLDTMYDIPSIEGVVKAVVDESVVN 405


>gi|152968973|ref|YP_001334082.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893387|ref|YP_002918121.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330011534|ref|ZP_08307120.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
 gi|166214780|sp|A6T5I1|CLPX_KLEP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150953822|gb|ABR75852.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545703|dbj|BAH62054.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328534151|gb|EGF60786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
          Length = 424

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 165/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +DA+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403


>gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisB18]
 gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas
           palustris BisA53]
 gi|122296221|sp|Q07NN5|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122476340|sp|Q215J1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisB18]
 gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris BisA53]
          Length = 424

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 SGLEKI--ISARGRSTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 401


>gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 425

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 164/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLKNSNHKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++   AR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFSGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                      + SG G G   +G              +     +  +    I  G    
Sbjct: 263 ---------SHKGSGIGFGAQIKGEDDK---------ATISEILMQVEPEDLIKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL++ ++ L  Q+  L + EG+ L+FTED+
Sbjct: 301 -----LIPEFVGRLPVLSTLTELDEEALVQILSEPKNALTKQFAALFEMEGVELEFTEDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L DI +      +   VVID   V+
Sbjct: 356 LKAIAAKAMMRKT-----GARGLRSIVEGILLDIMYDLPSSDDVAKVVIDESVVK 405


>gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 437

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/421 (26%), Positives = 171/421 (40%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+ I S LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 79  SPQHIHSVLDDYVIGQAYAKRVLSVAVHNHFKRLNHAQKNSDVELAKSNILLVGPTGSGK 138

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 139 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQRGIV---- 194

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 195 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 220 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFIVGGAF 264

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I +R  G  IG + E      +  +E   +      +  + +L         
Sbjct: 265 AGLDKV--IQSRGDGASIGFNAE------VKELEDRRIGDVLREVEPEDLLKF------- 309

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + L F  ++
Sbjct: 310 ----GLIPEFIGRLPVIATLEDLDEEALVQILTSPKNALVKQYQRLFEMEDVKLTFKPEA 365

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI+AE V      
Sbjct: 366 LVAVAKKAITRKT-----GARGLRSIMEGILLDTMFDLPTLENVEEVVINAEVVEGKGDP 420

Query: 426 F 426
            
Sbjct: 421 L 421


>gi|320540338|ref|ZP_08039990.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
 gi|320029658|gb|EFW11685.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
          Length = 423

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 161/414 (38%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKRLRNSDASNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+       ++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLRKCDYNAQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ +    G G+              G   + K  S        +       
Sbjct: 255 ------DKVIGQRVNTGSGI--------------GFGATVKGESEKATEGELLLQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++
Sbjct: 295 LINFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++A+A  A+   +     GAR L++++E  L D  +    +   + VVID   +
Sbjct: 355 LNAIAKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVIDEPVI 403


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 172/416 (41%), Gaps = 80/416 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI+  LD Y+IGQ  AK+ +A+A+ N ++R    +   + EL   NILLVGPTG GKT
Sbjct: 68  PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V     
Sbjct: 128 YLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV----- 182

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D +++  S + S      G  V
Sbjct: 183 ---------------------------------YIDEVD-KISRKSDNPSITRDVSGEGV 208

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   +     +   +   Q+                  V   +I  +      
Sbjct: 209 QQALLKIMEGTIASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 253

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD    I AR     IG S       ++   +   V     ++ ++ ++          
Sbjct: 254 GLDRI--ISARGEKASIGFS------AVVKDSDNRPVGEVLRNLESEDLVKF-------- 297

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L+++    IL++ ++ LI QY+ L   E + L F ED++
Sbjct: 298 ---GLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDAL 354

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
             +A  A+   +     GAR L++++E++L D  F    L+   +V+I  + V+  
Sbjct: 355 REIARCAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGK 405


>gi|322834045|ref|YP_004214072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
 gi|321169246|gb|ADW74945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
          Length = 424

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 168/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R+                   
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRI------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       ++G G G   +G ++                   T+  L   +    +
Sbjct: 263 ----------NTNTGIGFGAEVKGKEQKA-----------------TEGQLLAQAEPEDL 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  LN+     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 296 IK-FGLIPEFIGRLPVVATLSELNEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L D  +    L++ + VVID   +      
Sbjct: 355 LTAIAKKAMIRKT-----GARGLRSIVEAALLDTMYDLPSLEDVEKVVIDESVIAGQSEP 409

Query: 426 FP 427
             
Sbjct: 410 LM 411


>gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
 gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae NT127]
          Length = 411

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AF-SGLDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|297250255|ref|ZP_06863929.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
 gi|296839417|gb|EFH23355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           polysaccharea ATCC 43768]
          Length = 394

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 178/416 (42%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P      EL   NILL+GPTG GK
Sbjct: 46  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 105

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 162

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 163 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 208 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 229

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 230 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 273

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E++
Sbjct: 274 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENA 333

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 334 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGKAVIEE 384


>gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
 gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittII]
 gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3047]
          Length = 411

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           cf. saccharolyticum K10]
          Length = 434

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 172/420 (40%), Gaps = 81/420 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ++AK+ +++A+ N ++R         +L   NIL++GPTG GK
Sbjct: 66  LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LA++   PF   + T  TE GYVG +VE I+  ++  A   + ++    +    
Sbjct: 126 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGII---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 182 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+            L+ +DT +     ++   G 
Sbjct: 207 VQQALLKILEGTVASVPPQGGRKHPQQE------------LLQIDTTN-----ILFICGG 249

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R     IG   E   R                  N+D    +A     
Sbjct: 250 AF-DGLEKIVENRLGAGSIGFEVEIADRQ-----------------NSDIDEMLAQVMPE 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V LKSLN+     IL+  ++ ++ QY+ L   +G+ L+FT+D
Sbjct: 292 DLTKFGLIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIG 424
           ++ ++A +AV   +     GAR L+ +ME V+ DI +    D       I  + V    G
Sbjct: 352 ALYSIAHMAVERKT-----GARGLRAIMESVMMDIMYEIPSDSSIGICTITKDVVEGKCG 406


>gi|27363511|ref|NP_759039.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio vulnificus
           CMCP6]
 gi|37679289|ref|NP_933898.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus
           YJ016]
 gi|320156968|ref|YP_004189347.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
 gi|31340018|sp|Q8DG27|CLPX_VIBVU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576400|sp|Q7MMG6|CLPX_VIBVY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27359627|gb|AAO08566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           vulnificus CMCP6]
 gi|37198032|dbj|BAC93869.1| ATP-dependent Clp protease, ATPase subunit [Vibrio vulnificus
           YJ016]
 gi|319932280|gb|ADV87144.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           vulnificus MO6-24/O]
          Length = 426

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 163/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPREIRAHLDDYVIGQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  I                  
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGG---------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKD-------ESKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL   ++ L  QY  L + EG  L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTASLTELDEEALIQILCQPKNALTKQYAALFELEGADLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    + +   VVID   + 
Sbjct: 355 DALKAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVIDESVIN 406


>gi|329296783|ref|ZP_08254119.1| ATP-dependent protease ATP-binding subunit ClpX [Plautia stali
           symbiont]
          Length = 423

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G   + K  S        ++      
Sbjct: 255 ------DKVISQRVETGSGI--------------GFGATVKGKSQKASEGELLSQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A +  +     GAR L++++E  L +  +    ++  + VVID   +   
Sbjct: 355 LTAIAKKANSRKT-----GARGLRSIVEAALLETMYDLPSMEGVEKVVIDESVIEGQ 406


>gi|296112318|ref|YP_003626256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
 gi|295920012|gb|ADG60363.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella
           catarrhalis RH4]
          Length = 438

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|303236760|ref|ZP_07323339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           disiens FB035-09AN]
 gi|302482928|gb|EFL45944.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           disiens FB035-09AN]
          Length = 408

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 175/424 (41%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI + LD YIIGQ +AKR +A+A+ N ++R Q P +  D E+   NI++VG TG GK
Sbjct: 62  KPKEIKAYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKEDDDVEVEKSNIIMVGSTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 122 TLLARTIAKLLNVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERGIV---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 178 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 202 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 245

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                     D    +       
Sbjct: 246 AFDGIERKIAQRLNTHVVGYNS--VQNVA----------------KIDKKDLMKYVLPQD 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            R   L+PEI GR PV  +L  L++   R IL + +++++ QY +L K +GI L FT ++
Sbjct: 288 LRSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGINLSFTNEA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +D + D AV        +GAR L++++E V+ +  F     + K   + A Y +  +   
Sbjct: 348 LDYIVDKAVEYK-----LGARGLRSIVEAVMMEQMFELPSKRVKKYEVTASYAKEQLDKA 402

Query: 427 PSET 430
               
Sbjct: 403 KLNK 406


>gi|317504965|ref|ZP_07962913.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae
           DSM 15606]
 gi|315663847|gb|EFV03566.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae
           DSM 15606]
          Length = 414

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 114/432 (26%), Positives = 179/432 (41%), Gaps = 81/432 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD YIIGQ +AKR +++++ N ++R Q P D    E+   NI++VG
Sbjct: 59  KLKKVPKPKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPTDEDGVEIEKSNIIMVG 118

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 119 STGTGKTLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERG 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 179 IV-----------FID-----------------------------EIDKIARKSDNPSIT 198

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 199 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTKNI 242

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G +   VQ                     D    + 
Sbjct: 243 LFICGGAFDGIERKIAQRMNTHVVGYNS--VQNVA----------------KIDKSDLMK 284

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + ++++I QYK+L + +GI L
Sbjct: 285 YVQPMDLKSFGLIPEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYKKLFEMDGIKL 344

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F ED++D + D AV        +GAR L++++E ++ D  F     + K  V+  +Y +
Sbjct: 345 SFEEDTLDFIVDKAVEYK-----LGARGLRSIVESIMMDAMFEVPSKRMKDFVVTLDYAK 399

Query: 421 LHIGD-FPSETD 431
             +   +    D
Sbjct: 400 NQLDKSYLQNLD 411


>gi|240080536|ref|ZP_04725079.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae FA19]
 gi|240123698|ref|ZP_04736654.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID332]
 gi|240128399|ref|ZP_04741060.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268596668|ref|ZP_06130835.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268682330|ref|ZP_06149192.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268686798|ref|ZP_06153660.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268550456|gb|EEZ45475.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           FA19]
 gi|268622614|gb|EEZ55014.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID332]
 gi|268627082|gb|EEZ59482.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 414

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|281421758|ref|ZP_06252757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           copri DSM 18205]
 gi|281404253|gb|EFB34933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           copri DSM 18205]
          Length = 409

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 173/419 (41%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P EI   LD YIIGQ  AKR +A+A+ N ++R Q P D    E+   NI++VG TG GK
Sbjct: 61  KPVEIKKYLDEYIIGQDQAKRNLAVAVYNHYKRLQQPKDEDGVEIEKSNIIMVGSTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A++   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 121 TLLARTIAKMLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYDVAAAERGIV---- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 177 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 200

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 201 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTKNILFICGG 244

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                     D    +       
Sbjct: 245 AFDGIERKIAQRMNTHVVGYNS--VQNVA----------------KIDKKDLMQYILPQD 286

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L++   R IL + +++++ QY++L + +GI L F E++
Sbjct: 287 LKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYQKLFEMDGIKLKFDEEA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     + K+  +  EY +  +  
Sbjct: 347 LDYIVDKAVEYK-----LGARGLRSIVEAVMMDAMFEIPSEKVKSFTVTLEYAKQQLDK 400


>gi|284047884|ref|YP_003398223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidaminococcus fermentans DSM 20731]
 gi|283952105|gb|ADB46908.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidaminococcus fermentans DSM 20731]
          Length = 423

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 174/434 (40%), Gaps = 83/434 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVG 60
           +T    P+EI + LD Y+IGQ++AK+ +A+A+ N ++R           EL   NIL++G
Sbjct: 61  ITDLPKPKEIKAILDEYVIGQEEAKKTLAVAVYNHYKRINYEQGHHQDVELQKSNILMLG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R 
Sbjct: 121 PTGSGKTLLAQTLAKILKVPFAIADATSLTEAGYVGEDVENILLRLIQNADYDIARAERG 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V         + I          S TR+V  + ++   +   E           ++N  
Sbjct: 181 IVY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILE---------GTVANVP 224

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             GG                        +                     + +  D+  +
Sbjct: 225 PQGG-----------------------RKHP-----------------HQELIQIDTTNI 244

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F    + I AR     +G   E   +              +  +      F+ 
Sbjct: 245 LFICGGAFAGLENVINARTGKKSMGFGAEIPTQAEKK------SENPFRQV--LPEDFVK 296

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
            G         L+PE  GR PV V L +L++     ILT+ ++ L  QY+ L+  + + L
Sbjct: 297 YG---------LIPEFVGRLPVVVTLDNLDEKALIKILTEPKNALTKQYEHLLAMDHVEL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           DF E ++ A+A  A+  N+     GAR L+ ++E +++++ +        +  ++ A+ V
Sbjct: 348 DFEEGALKAIAHEALARNA-----GARGLRAIIEGIMKNVMYEVPSRDNVEKCIVTADVV 402

Query: 420 RLHIGD--FPSETD 431
             H        + D
Sbjct: 403 TKHKDPKLLLKQED 416


>gi|259909251|ref|YP_002649607.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae
           Ep1/96]
 gi|224964873|emb|CAX56395.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia
           pyrifoliae Ep1/96]
          Length = 424

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKSKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 403


>gi|145298872|ref|YP_001141713.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|226706574|sp|A4SM43|CLPX_AERS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|142851644|gb|ABO89965.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 424

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +  ++    EL   NILL+GPTG GK
Sbjct: 66  TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSSEAGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ + S  G G+   G   D+      +++S  +  +  + ++         
Sbjct: 255 ------DKVIEQRSVKGTGI---GFGADVKSKNARATLSENFAKVEPEDLI--------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    IL + ++ L  QY  L   EG+ L+F +D+
Sbjct: 297 --KYGLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++A+A  A+   +     GAR L++++E VL D  +    L+    VVID   ++
Sbjct: 355 LNAIAHKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404


>gi|82542926|ref|YP_406873.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           Sb227]
 gi|123560438|sp|Q325G3|CLPX_SHIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81244337|gb|ABB65045.1| ATP-dependent specificity component of clpP serine protease
           [Shigella boydii Sb227]
          Length = 424

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 165/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+++     G G+              G   + K  S        +A      
Sbjct: 255 ------DKVISHRVETGSGI--------------GFGATVKAKSDKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV-VIDAEYVRLHIGD 425
           +DA+A  A+   +     GAR L++++E  L D  +    +++    VID   +      
Sbjct: 355 LDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKGVIDESVIDGQSKP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|291518669|emb|CBK73890.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 428

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 173/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P ++ + LD+Y+IGQ +AK+ +++A+ N ++R    P D+  EL   N+L++GPTG GK
Sbjct: 66  KPEDMKAFLDQYVIGQDEAKKVLSVAVYNHYKRIMANPDDIDVELQKSNVLMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+ G PF   + T  TE GYVG +VE I+  L+  A   ++++    V    
Sbjct: 126 TLLAQTLARVLGVPFAIADATTLTEAGYVGEDVENILLKLIQAAEFDIKKAEIGIV---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 182 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  +   +I  +     
Sbjct: 207 VQQALLKIIEGTVANVPPQGGRKHPQQETI---------------AIDTKNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R + + IG   +   ++   + E                 FI  G    
Sbjct: 252 EGLEKI--ISQRTNVSAIGFGADVKDKNNQKIDE--------LLQQALPQDFIKYG---- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+ V L  L + D   IL + +++L  QY+ L K +G+ L F +D+
Sbjct: 298 -----LIPEFIGRVPINVSLNELTEDDMIRILKEPKNSLTKQYQALFKMDGVKLFFEDDA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGD 425
           +  +A  ++   +     GAR L+ ++E V+ D  +    D     + +  E V  ++  
Sbjct: 353 LREIAKKSIERKT-----GARGLRAIVESVMMDYMYHVPSDETITEITVTKEMVDNNLLL 407

Query: 426 FPSETD 431
              ++D
Sbjct: 408 IDKDSD 413


>gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           R3021]
 gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.4-21]
          Length = 411

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 171/424 (40%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQGG--------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  +    I  +     
Sbjct: 226 ---------------------RKHPQQE---------------MVKLDTSKILFICGGAF 249

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  DK     +  G     E  ++         S+S  +  +  D ++        
Sbjct: 250 AGLDKIIDKRTQTSTSIGFNAKVEKDEKKQ-------SLSELFRQVEPDDLMKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +
Sbjct: 297 -----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++ 
Sbjct: 352 ALKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLA 406

Query: 425 DFPS 428
               
Sbjct: 407 PKLE 410


>gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 422

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/421 (24%), Positives = 170/421 (40%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ  AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 66  TPQEICTVLDDYVIGQDYAKRVLSVAVHNHYKRINHSAKNNDVELAKSNILLIGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVDRAQRGIV---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 182 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 207 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R   + IG               G+ V+++    +      +       
Sbjct: 252 SGLEKI--IAQRGKSSSIGF--------------GAKVTSED---DRRTGEILRGVEPED 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L   EG+ L  + ++
Sbjct: 293 LLRFGLIPEFIGRLPVLATLEDLDEVALVKILSEPKNALVKQYQRLFDMEGVQLTLSNEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + ++A  A+   +     GAR L+++ME +L D  F    L+  + VVI  E +  +   
Sbjct: 353 LKSVARKAIERKT-----GARGLRSIMEAILLDSMFELPSLKGVEEVVISPEVIEGNAKP 407

Query: 426 F 426
            
Sbjct: 408 L 408


>gi|17546431|ref|NP_519833.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum
           GMI1000]
 gi|21263463|sp|Q8XYP6|CLPX_RALSO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17428729|emb|CAD15414.1| probable atp-dependent clp protease atp-binding subunit clpx
           protein [Ralstonia solanacearum GMI1000]
          Length = 424

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 179/415 (43%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R   +GIG   E      +   E   V+     +  + ++        
Sbjct: 253 AF-DGLEKIITQRSDKSGIGFGAE------VKSKEERDVNEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +
Sbjct: 355 ALTAIARKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTI 404


>gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 406

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 170/420 (40%), Gaps = 82/420 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T    P+EI   LD Y+IGQ+ +K+ +++A+ N ++R    + + + E+   N+LL+GPT
Sbjct: 56  TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  +
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGII 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + +         TS TR+V  + ++   +  K I+  V+            
Sbjct: 176 Y-------IDEVDKISRKSENTSITRDVSGEGVQQALL--KVIEGTVSSVPPQGG----- 221

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                 ++          ++ D+I  + 
Sbjct: 222 ---------------------------------RKHPHQEFI-------QINTDNILFIF 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I +R  G+ +G                   + +  S N D        
Sbjct: 242 GGAFDGLDKI--IESRHRGSSMGFE----------------ANVQKVSKNKD---IFCYT 280

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L++S    IL + +++L+ QYK+L + + I L F
Sbjct: 281 EPEDLVKFGLIPEFVGRIPVITSLGELDESTLCRILVEPKNSLVKQYKKLFEMDNINLQF 340

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
            + ++  +A  A    +     GAR L+ ++E +L D+ F +    +   VVI  E V  
Sbjct: 341 DDSALSVIAKKAAVRKT-----GARGLRAILEALLLDLMFESPGSSDVNQVVISKEMVEE 395


>gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
 gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
          Length = 422

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 171/415 (41%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R    A      EL   NI+LVGPTG G
Sbjct: 65  TPKEICEVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNIMLVGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSDNPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFIVGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  R  G+ +G   +  +++   + E                LF+      
Sbjct: 251 FAGLDKI--IAQRGKGSAMGFGADVREKNDKGIGE----------------LFLDLEPED 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D
Sbjct: 293 LLK-FGLIPEFVGRLPVLATLQDLDEDALITILTEPKNALVKQYQRLFELEETALTFTDD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E +L +  F    +   T VV++ E V
Sbjct: 352 ALTAIARRAIERKT-----GARGLRSILEDILLETMFDLPGMDSVTEVVVNEEAV 401


>gi|262373454|ref|ZP_06066732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
 gi|262311207|gb|EEY92293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           junii SH205]
          Length = 436

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 177/445 (39%), Gaps = 98/445 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +      A    E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQTHHAHQDIEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 227 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN-TDHILFIASG 302
                L++   +  R    GIG + +   +D         VS  +  +  TD + F    
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDDSK-----KVSELFRQVEATDLVKF---- 296

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L F
Sbjct: 297 --------GLIPEFIGRLPVIATLDELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVF 348

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR- 420
            E ++ A+A  A+  N+     GAR L++++E VL +  +     ++  TV++D   +  
Sbjct: 349 DESALRAVAKKALERNT-----GARGLRSILENVLLETMYDLPSRKDVGTVIVDEAVING 403

Query: 421 --------LHI-----GDFPSETDM 432
                     +      +   + D+
Sbjct: 404 TAKPTYKPERLPQTTAAELIEKKDL 428


>gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp.
           1501(2011)]
          Length = 425

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 185/429 (43%), Gaps = 92/429 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI   LD Y+IGQ+ AK+A+++A+ N ++R ++ A L D              EL  
Sbjct: 67  TPKEIRQHLDSYVIGQETAKKALSVAVYNHYKRLKVAAKLADDRKQAKIGADDAMVELSK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A   
Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYD 186

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V               AE+ I+                            EID +++   
Sbjct: 187 V-------------ERAEQGII-------------------------YVDEID-KISKKG 207

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            ++S      G  V    L  +   V         +   Q+            LI +DT 
Sbjct: 208 ENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQE------------LIQVDT- 254

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I ++       LD+   I  R   +GIG + E     +    +G  ++  +  +  
Sbjct: 255 --SNILIIVGGAFSGLDKV--IQQRTEKSGIGFNAE-----VKSKEDGKQLTELFKQVEP 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           + ++              L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L 
Sbjct: 306 EDLIKF-----------GLIPELIGRLPVIATLEELDEDALMQILTEPKNAIIKQYQYLF 354

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + E   L FTE+ + A+A  A+   +     GAR L++++E  L D  +    + E KTV
Sbjct: 355 EMEDAELTFTEEGLKAIAHKAMERKT-----GARGLRSIVENALLDTMYELPSMSEAKTV 409

Query: 413 VIDAEYVRL 421
           V+D   +  
Sbjct: 410 VVDESVIND 418


>gi|320354137|ref|YP_004195476.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus
           propionicus DSM 2032]
 gi|320122639|gb|ADW18185.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus
           propionicus DSM 2032]
          Length = 422

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 172/416 (41%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P+EI + LD+Y++GQ+ AKR +++A+ N ++R   P    D  EL   NI+L+GPTG 
Sbjct: 66  LKPKEIKAYLDQYVVGQEHAKRILSVAVHNHYKRISAPPADDDAVELQKSNIILIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   + +++R  +  
Sbjct: 126 GKTLVAQTLARLLKVPFTIADATTLTEAGYVGEDVENILVSLLQAADYDIEKAQRGIIY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E                    
Sbjct: 185 ------IDEIDKIARKSDSASLTRDVSGEGVQQALLKIIE-------------------- 218

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                     + S     GRK   +  V                    +   +I  +   
Sbjct: 219 --------GTMASVPPKGGRKHPQQELV-------------------RIDTTNILFIVGG 251

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD    I  R     +G   + V +    + E                  +AS   
Sbjct: 252 AFVGLDGV--IKRRTGTQAMGFGAKVVSQKERSIGE-----------------VLASIQP 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   ++ L + D   IL + ++ L  QY++L + EG+ L FTE
Sbjct: 293 EDLLKFGLIPELVGRLPVIATMEELVEEDLIRILKEPKNALSKQYQKLFEYEGVTLRFTE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            +  A+A  A+   S     GAR L++VME  + D+ +     +  T  VI+ + +
Sbjct: 353 GAFKAIAQKALARKS-----GARGLRSVMEECMLDVMYELPSDEHATECVINEQVI 403


>gi|315650623|ref|ZP_07903683.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487120|gb|EFU77442.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
          Length = 427

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 178/416 (42%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ DAK+ +++A+ N ++R +   +   E+   NIL++GPTG GK
Sbjct: 63  LKPKEIKKFLDDYVIGQDDAKKVLSVAVYNHYKRIKSKRNAEVEIQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+ +    +    
Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVKRAEYGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            LI +DT +     ++   G 
Sbjct: 204 VQQALLKILEGSIASVPPQGGRKHPQQE------------LIQIDTTN-----ILFICGG 246

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R S   IG + + V+++   + E                LF       
Sbjct: 247 AF-DGLEKIVENRLSKGSIGFNSDVVEKNSKSIDE----------------LFKMVLPGD 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++   L+PE  GR PV V L  L+K     I+T  ++ +  QY++L + + + L+F + 
Sbjct: 290 LTK-FGLIPEFIGRVPVTVSLDMLDKEALMQIMTKPKNAITKQYQKLFELDDVKLEFDDK 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ +A++A+        IGAR L++++E V+ D+ +    D       I  E + 
Sbjct: 349 AVEEVANLALERK-----IGARGLRSILEGVMTDMMYEIPSDPNIGICTITKETID 399


>gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
 gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
          Length = 426

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 355 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406


>gi|269213481|ref|ZP_06157997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
 gi|269146222|gb|EEZ72640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           cinerea ATCC 14685]
          Length = 394

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 46  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGCNVELSKSNILLIGPTGSGK 105

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 162

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 163 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 208 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 229

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 230 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 273

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E++
Sbjct: 274 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENA 333

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DL+  K VV+    +  
Sbjct: 334 LRSIASQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGEAVIEE 384


>gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus
           2336]
 gi|189044137|sp|B0UW19|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           somnus 2336]
          Length = 414

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 179/417 (42%), Gaps = 77/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R +   +  + EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE +++ L+      + ++++  +    
Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIEKAQQGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K ++  VA                
Sbjct: 181 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLVEGTVASIPPQGG--------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  V    I  +     
Sbjct: 226 ---------------------RKHPQQE---------------MLRVDTSKILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R + +G G+   G   D+    E  S++  +  +  D ++         
Sbjct: 250 AGLDKI--IEKRTNTSGKGI---GFGADVRIDEEKVSLTELFKQVEPDDLMKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E I L+FT+++
Sbjct: 298 ----GLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E +L D  +    ++  + V+++ E V  +
Sbjct: 354 LIAMAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETVTEN 405


>gi|46577697|sp|P70730|CLPX_AZOBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|5002358|gb|AAD37436.1|AF150957_3 heat-shock protein ClpX [Azospirillum brasilense]
          Length = 422

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/426 (24%), Positives = 165/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYV  +VE II  L+  A    R ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVREDVENIILKLLQAARLQRRAAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G  IG   +    D                                
Sbjct: 251 AGLDKI--IAQRGKGTSIGFGADVRGPDERS----------------------TGDILRE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT  ++ L+ QY+ L + E + L+
Sbjct: 287 VEPEDLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F++D++  ++  A+   +     GAR L+++ME +L D  F    L   ++++++ E V 
Sbjct: 347 FSDDALRTISHKAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVVE 401

Query: 421 LHIGDF 426
                 
Sbjct: 402 GRAKPL 407


>gi|251790647|ref|YP_003005368.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya zeae
           Ech1591]
 gi|247539268|gb|ACT07889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya zeae
           Ech1591]
          Length = 424

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 166/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +    +   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRTSDGNNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ + +  G G+              G + + K  S        ++      
Sbjct: 255 ------DKVIEQRTDTGRGI--------------GFNATVKGVSQKATEGELLSQVEPGD 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L +  +    L+    VVID   +      
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVIDESVISGQSEP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|221633184|ref|YP_002522409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomicrobium roseum DSM 5159]
 gi|221156856|gb|ACM05983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomicrobium roseum DSM 5159]
          Length = 423

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 84/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+++  +L++Y++GQ+ AK+ +++A+ N ++R     D   EL   NILL+GPTG GKT
Sbjct: 66  TPKQLYEQLNQYVVGQERAKKVLSVAVYNHYKRIIFGEDSDVELQKSNILLIGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   ++ ++   +     
Sbjct: 126 LLAQTLAKLLDVPFSISDATTLTEAGYVGEDVENILLRLIQAAGGDIQRAQTGIIY---- 181

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I        + S TR+V  + ++   +   E  I         +N    GG   
Sbjct: 182 ---IDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTI---------ANVPPHGG--- 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                            ++          +   +I  +      
Sbjct: 227 ----------------------------RKHPHQEYI-------QIDTRNILFICGGAFE 251

Query: 248 FLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            LDE   IV R  G  + IG  +   Q       +G   +  +  I  D + F       
Sbjct: 252 GLDE---IVRRRIGKDSTIGFGKSARQ-------DGRVENVLHQVIPDDLLKF------- 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L   D   IL + ++ ++ QY+++   + + L FT D
Sbjct: 295 -----GLIPEFIGRLPVVAALDPLTHDDLVRILVEPKNAIVKQYQKIFAMDNVELIFTPD 349

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A AD+A    +     GAR L+T +E VL D+ +    LQ  +  V+ A+ +
Sbjct: 350 ALHATADLAERRGT-----GARGLRTTLEEVLLDVMYELPSLQGVRKCVVTADVI 399


>gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 426

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 169/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLVEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  S+S  +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKD-------ESKSLSELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E + L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTATLTELDQEALIQILCEPKNALTKQYAALFELENVNLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    + E + VVID   + 
Sbjct: 355 DALRAIAARAMKRKT-----GARGLRSILENVLLETMYELPSMTEVEKVVIDESVIN 406


>gi|254514392|ref|ZP_05126453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR5-3]
 gi|219676635|gb|EED33000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium NOR5-3]
          Length = 428

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/415 (27%), Positives = 168/415 (40%), Gaps = 80/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVGK 66
           P EI   LD Y+IGQQ AK+ +++A+ N ++R +         EL   NILLVGPTG GK
Sbjct: 69  PEEINGILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSGDVELGKSNILLVGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V    
Sbjct: 129 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQVGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   SI  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVDTSSILFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG               G+ V +K    N   +LF        
Sbjct: 255 AGLDKV--IRDRSEKGGIGF--------------GAEVHSKDAKRNVGEVLFDLE--PED 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+      ILT+  ++L  QY +L + EG+ +DF ED 
Sbjct: 297 LVQYGLIPEFVGRLPVIATLEELDVPALVQILTEPRNSLTKQYSKLFEMEGVEIDFREDG 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A+ A+   +     GAR L++++E VL D  +S     +   VV+D   +R
Sbjct: 357 LRAVAEKAMERKT-----GARGLRSILEGVLLDTMYSIPSRDDVAKVVVDESVIR 406


>gi|209525240|ref|ZP_03273782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
 gi|209494255|gb|EDZ94568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
          Length = 447

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 167/426 (39%), Gaps = 81/426 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNIL 57
           L     PREI + LD Y+IGQ DAK+ +++A+ N ++R          D + EL   NIL
Sbjct: 79  LNQIPKPREIKAYLDHYVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNIL 138

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E+
Sbjct: 139 LIGPTGCGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEA 198

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           +R  V                                         EID ++A  S + S
Sbjct: 199 QRGIV--------------------------------------YIDEID-KIARKSENPS 219

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G  V    L  L         +   +   Q C                 +   +
Sbjct: 220 ITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCI---------------QIDTSN 264

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  +     V L++   I  R     +G    G +                   +     
Sbjct: 265 ILFICGGAFVGLEKI--IEQRSGKKSMGFVHSGQEVTPDK--------------DKKDAE 308

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
            +     +      L+PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + 
Sbjct: 309 ALKGIEPNDLVKFGLIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDN 368

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L+F  D+I A+A  A    +     GAR L+ ++E ++ D+ +     ++ K  ++  
Sbjct: 369 VHLEFDADAIRAIAQEAFRRKT-----GARALRGIVEELMLDVMYELPSRKDVKRCMVTQ 423

Query: 417 EYVRLH 422
           E V   
Sbjct: 424 EMVEKR 429


>gi|315634781|ref|ZP_07890063.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476333|gb|EFU67083.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 416

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/417 (23%), Positives = 174/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 66  TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+      +  + +  +    
Sbjct: 126 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIERAEQGIIY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVASIPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M      KI       +  L     D++I+     R S+     +G 
Sbjct: 226 ----GGRKHPQQEMLRIDTSKILFICGGAFAGL-----DKVIE----KRTSVATAIGFGA 272

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               E DK                           ++++  +  +  D ++         
Sbjct: 273 EIKSEKDK---------------------------ATLTDLFKQVEPDDLM--------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT+D+
Sbjct: 297 --KYGLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVELEFTKDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E VL D  +    L+  + VV++   +  +
Sbjct: 355 LIAMAKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVVNESVINDN 406


>gi|149911804|ref|ZP_01900407.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36]
 gi|149805104|gb|EDM65127.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36]
          Length = 424

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P +I  +LD Y+IGQ  AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHQIRGKLDDYVIGQDHAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARILDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+M                
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFSGL-----DKVIEM---------------- 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       ++ +GIG + E     +    E +++S  +  +    ++         
Sbjct: 261 ----------RTNTNSGIGFTAE-----VKGEAEKATLSEVFAKVEPQDLVKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++S    ILT+ ++ L  QY  L   EG+ L+F E++
Sbjct: 299 ----GLIPEFIGRLPVTATLTELDESALIQILTEPKNALTKQYSALFDLEGVDLEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++ N+     GAR L++++E +L D  +    +     VVID   + 
Sbjct: 355 LTAIAKKAMSRNT-----GARGLRSIVEAILLDTMYDLPSVDNVSKVVIDESVIN 404


>gi|148548676|ref|YP_001268778.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           F1]
 gi|166214807|sp|A5W634|CLPX_PSEP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148512734|gb|ABQ79594.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas
           putida F1]
 gi|313499613|gb|ADR60979.1| ClpX [Pseudomonas putida BIRD-1]
          Length = 427

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +       + I       +  L +      +  +   +  I       
Sbjct: 228 -----GGRKHPQQEFLQVDTRNILFICGGAFSGLEK------VIQNRSTKGGIGFGAE-- 274

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + +++ G  +G S   V+ D L          K+G                
Sbjct: 275 ---------VRSKEEGKKVGESLREVEPDDL---------VKFG---------------- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D
Sbjct: 301 ------LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     ++   VVID   + 
Sbjct: 355 ALKAVARKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVIDESVIE 405


>gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
 gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 170/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLVEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L     D++I+         ++ +  G
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFSGL-----DKVIEQ--------RVAKGTG 269

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           I F  E      R   N   +S    Q +   L        KYG                
Sbjct: 270 IGFGAEV-----RSKDNSKSLSELFTQVEPEDL-------VKYG---------------- 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED
Sbjct: 302 ------LIPEFIGRLPVTATLTELDEKALIQILCEPKNALTKQYAALFELEKAELEFRED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL +  +    + + + VVID   + 
Sbjct: 356 ALRAIAAKAMKRKT-----GARGLRSILENVLLETMYELPSMADVEKVVIDESVIN 406


>gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           O395]
 gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           MJ-1236]
 gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae MJ-1236]
 gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae LMA3894-4]
          Length = 426

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 355 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406


>gi|325274290|ref|ZP_08140401.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
           TJI-51]
 gi|324100573|gb|EGB98308.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp.
           TJI-51]
          Length = 427

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +       + I       +  L +      +  +   +  I       
Sbjct: 228 -----GGRKHPQQEFLQVDTRNILFICGGAFSGLEK------VIQNRSTKGGIGFGAE-- 274

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + +++ G  +G S   V+ D L          K+G                
Sbjct: 275 ---------VRSKEEGKKVGESLREVEPDDL---------VKFG---------------- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D
Sbjct: 301 ------LIPEFVGRLPVLATLDELDEAALVQILTEPKNALTKQYAKLFEMESVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     ++   VVID   + 
Sbjct: 355 ALKAVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVIDESVID 405


>gi|291278626|ref|YP_003495461.1| ATP-dependent Clp protease ATP-binding subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753328|dbj|BAI79705.1| ATP-dependent Clp protease, ATP-binding subunit [Deferribacter
           desulfuricans SSM1]
          Length = 410

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/426 (22%), Positives = 170/426 (39%), Gaps = 89/426 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI ++LD Y+IGQ DAKR +++A+ N ++R         E+   NIL++GPTG GKT
Sbjct: 59  KPAEIKAKLDEYVIGQDDAKRVLSVAVYNHYKRILFGKKTDVEIEKSNILMIGPTGTGKT 118

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++R LA++   PF   + T  TE GYVG +VE ++  L+  A   +  +       +  
Sbjct: 119 LLARTLAKILNVPFAIADATTLTEAGYVGEDVENVVLKLIQAADYDIERA------SKGI 172

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I  +E I        + S TR+V  + ++   +   E           ++N    GG   
Sbjct: 173 IFIDE-IDKISRKTDSPSITRDVSGEGVQQALLKIIE---------GTVANIPPQGG--- 219

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                            ++          +   +I  +      
Sbjct: 220 ----------------------------RKHPHQEYL-------QIDTTNILFICGGAFA 244

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L+E   I  R     +G + E   ++ L   E                           
Sbjct: 245 GLEEV--IKRRIGKKSLGFNSEIENQNKLSRDE----------------------ILRQV 280

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           +P D     L+PE  GR PV   L  L++     ILT+ +++L+ Q++E+ K + + L F
Sbjct: 281 QPEDLIKYGLIPEFVGRLPVIATLHDLDEEALIKILTEPKNSLVKQFQEIFKLDNVKLTF 340

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           T+ ++ A+A  A+   +     GAR L++++E  + D+ +    +   K  +++ + +  
Sbjct: 341 TQGALRAIAKKAIARKT-----GARGLRSIVEEAMLDLMYQIPSMDGLKECIVNEDVINK 395

Query: 422 HIGDFP 427
                 
Sbjct: 396 KAEPIL 401


>gi|197105277|ref|YP_002130654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phenylobacterium zucineum HLK1]
 gi|238690156|sp|B4RCN8|CLPX_PHEZH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|196478697|gb|ACG78225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phenylobacterium zucineum HLK1]
          Length = 420

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/403 (25%), Positives = 159/403 (39%), Gaps = 79/403 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKNNDVELGKANILLIGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTVADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR  G  IG   +    D     E       +  +  D +L         
Sbjct: 251 AGLEKI--ISARGQGTSIGFGAKVADPDERRTGEI------FRQVEPDDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++  + QY  L + E + L FTED+
Sbjct: 294 --RFGLIPEFIGRLPVIATLDDLDEKALVKILTEPKNAFVKQYVRLFEMENVGLTFTEDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + A+A  A+   +     GAR L++++E VL D  +       
Sbjct: 352 LMAVARKAIQRKT-----GARGLRSILEGVLLDTMYELPTYDG 389


>gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|123773227|sp|Q3SRD3|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255]
          Length = 424

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 251 SGLEKI--ISARGRTTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 294 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 352 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 401


>gi|24373361|ref|NP_717404.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis
           MR-1]
 gi|46576583|sp|Q8EG18|CLPX_SHEON RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24347624|gb|AAN54848.1|AE015624_1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           oneidensis MR-1]
          Length = 426

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        SG G G   +G +         S V              +  G    
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKDKATISETLSQVEP---------GDLVKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL++ ++ L  QY  L + EG+ L+F ED+
Sbjct: 301 -----LIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    +      V+D   V 
Sbjct: 356 LKAIAHKAMSRKT-----GARGLRSIVEGILLDTMYDIPSIDGVVKAVVDESVVN 405


>gi|240118149|ref|ZP_04732211.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria
           gonorrhoeae PID1]
 gi|268603866|ref|ZP_06138033.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
 gi|268587997|gb|EEZ52673.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae
           PID1]
          Length = 414

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ LD Y+IGQ  AK+A+A+A+ N ++R + P AD   EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V ++R   V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKARHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTANILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + ++  +G +  + ++         
Sbjct: 250 AFAGLEKVIRQRTEKGGIGFGASVHSKD-----ENAGITKLFGIVEPEDLIKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L   E + L+F E +
Sbjct: 298 ----GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+   +     GAR L++++ER L D  +   DLQ  K VV+    +  
Sbjct: 354 LRSIARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEE 404


>gi|254361749|ref|ZP_04977884.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
 gi|153093284|gb|EDN74280.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213]
          Length = 415

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 173/418 (41%), Gaps = 81/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPT 62
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R         A    EL   NILL+GPT
Sbjct: 66  TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSALSNHQATNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I        + S TR+V  + ++   +   E           ++N +  
Sbjct: 186 -------FIDEIDKITRKSESASITRDVSGEGVQQALLKLLE---------GTVANINPQ 229

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                        +    +  P          +D   +       + 
Sbjct: 230 GG-----------------------RKHPKGETIP----------VDTSKI-------LF 249

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F    DKIV   +    G+      +      + + +   +  +  + ++     
Sbjct: 250 ICGGAFAG-LDKIVEARTNTQGGIGFAAALKKDKDRQDLTEL---FKQVEPEDLVKF--- 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L F
Sbjct: 303 --------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHF 354

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           T+D++ ++A  A++  +     GAR L++++E +L D  +    L  K V I    V 
Sbjct: 355 TKDALISIAQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTIGKGCVE 407


>gi|300866515|ref|ZP_07111205.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
 gi|300335472|emb|CBN56365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
          Length = 447

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 174/424 (41%), Gaps = 86/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLV 59
            PREI + LD ++IGQ +AK+ +++A+ N ++R           P     EL   NILL+
Sbjct: 83  KPREIKNFLDEHVIGQDEAKKVLSVAVYNHYKRLSFVPVKGSTKPPTDEVELQKSNILLI 142

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   V E++R
Sbjct: 143 GPTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 202

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +                                         EID ++A  S + S  
Sbjct: 203 GII--------------------------------------YIDEID-KIARKSENPSIT 223

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   +     +   +   Q C                 +   +I 
Sbjct: 224 RDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------QIDTSNIL 268

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +     V LD+   I  R     +G  + G   DLLP  + ++   K    + D + F 
Sbjct: 269 FICGGAFVGLDKV--IEQRTGKKSMGFVQPG---DLLPKEKRTADVLKQLEPD-DLVKF- 321

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE  GR P+   ++ LN+     ILT+ ++ L+ QY++L+K + + 
Sbjct: 322 -----------GMIPEFIGRIPMLAVVEPLNEETLMAILTEPKNALVKQYQKLLKMDNVQ 370

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           LDF  ++I A+A  A    +     GAR L+ ++E ++ D+ +     ++     I  E 
Sbjct: 371 LDFKSEAIRAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVSRCTITKEM 425

Query: 419 VRLH 422
           V   
Sbjct: 426 VEKR 429


>gi|34498012|ref|NP_902227.1| ATP-dependent protease ATP-binding subunit ClpX [Chromobacterium
           violaceum ATCC 12472]
 gi|46576429|sp|Q7NUZ0|CLPX_CHRVO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|34103867|gb|AAQ60227.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Chromobacterium violaceum ATCC 12472]
          Length = 426

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/403 (26%), Positives = 173/403 (42%), Gaps = 80/403 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI ++LD+YIIGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 70  TPQEIRADLDQYIIGQDFAKKTLSVAVYNHYKRLYNKGGKDDVELAKSNILLIGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 130 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLLQKCDYDVDKAQRGIVY--- 186

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 187 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 231

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + +  D+  ++   G 
Sbjct: 232 ---------------------RKHP-----------------NQEFIQVDTTNILFICGG 253

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  DKI+  R    GIG   E   +D     +G S++  +  +    I+        
Sbjct: 254 AF-DGLDKIIRQRSEKGGIGFGAEVSSKD-----DGKSLTKLFQEVEPQDII-------- 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     ILT  ++ LI QY++L   E + L+    
Sbjct: 300 ---RFGLIPELIGRLPVVATLEELDEEALVSILTQPKNALIKQYQKLFSLETVELEVRPS 356

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           ++  +A  A+   +     GAR L++++ER L D  +    +Q
Sbjct: 357 ALRVIAKQALARKT-----GARGLRSILERALLDTMYELPSMQ 394


>gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
 gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
          Length = 443

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 172/420 (40%), Gaps = 81/420 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y++GQ++AK+ +++A+ N ++R         +L   NIL++GPTG GK
Sbjct: 75  LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LA++   PF   + T  TE GYVG +VE I+  ++  A   + ++    +    
Sbjct: 135 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAADYDISKAEYGII---- 190

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 191 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 215

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+            L+ +DT +     ++   G 
Sbjct: 216 VQQALLKILEGTVASVPPQGGRKHPQQE------------LLQIDTTN-----ILFICGG 258

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R     IG   E   R                  N+D    +A     
Sbjct: 259 AF-DGLEKIVENRLGAGSIGFEVEIADRQ-----------------NSDIDEMLAQVMPE 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V LKSLN+     IL+  ++ ++ QY+ L   +G+ L+FT+D
Sbjct: 301 DLTKFGLIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDD 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIG 424
           ++ ++A +AV   +     GAR L+ +ME V+ DI +    D       I  + V    G
Sbjct: 361 ALYSIAHMAVERKT-----GARGLRAIMESVMMDIMYEIPSDSSIGICTITKDVVEGKCG 415


>gi|153000123|ref|YP_001365804.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS185]
 gi|166215202|sp|A6WLQ2|CLPX_SHEB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151364741|gb|ABS07741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS185]
          Length = 426

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNASPKDGIELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        SG G G   +G +         + V              +  G    
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKEKATISETLTQVEP---------GDLVKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED+
Sbjct: 301 -----LIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    +      V+D   V+
Sbjct: 356 LKAIAHKAMSRKT-----GARGLRSIVESILLDTMYDIPSVDGVVKAVVDESVVK 405


>gi|126173839|ref|YP_001049988.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS155]
 gi|160874745|ref|YP_001554061.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS195]
 gi|217973909|ref|YP_002358660.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica
           OS223]
 gi|304409712|ref|ZP_07391332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|307304068|ref|ZP_07583821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|166215201|sp|A3D306|CLPX_SHEB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044150|sp|A9KWH8|CLPX_SHEB9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763862|sp|B8E5E8|CLPX_SHEB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125997044|gb|ABN61119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS155]
 gi|160860267|gb|ABX48801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS195]
 gi|217499044|gb|ACK47237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS223]
 gi|304352230|gb|EFM16628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS183]
 gi|306912966|gb|EFN43389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica BA175]
 gi|315266987|gb|ADT93840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           baltica OS678]
          Length = 426

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNASPKDGIELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        SG G G   +G +         + V              +  G    
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKEKATISETLTQVEP---------GDLVKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F ED+
Sbjct: 301 -----LIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    +      V+D   V+
Sbjct: 356 LKAIAHKAMSRKT-----GARGLRSIVESILLDTMYDIPSVDGVVKAVVDESVVK 405


>gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae Rd KW20]
 gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus
           influenzae F3031]
 gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1168980|sp|P44838|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus
           influenzae Rd KW20]
 gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae 86-028NP]
 gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittAA]
 gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus
           influenzae RdAW]
 gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus
           influenzae F3031]
 gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 411

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++D   +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Faecalibacterium prausnitzii L2-6]
          Length = 443

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 171/415 (41%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD+Y+IGQ +AKR +A+++ N ++R         EL   N+LL+GP+GVGKT
Sbjct: 86  TPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGKT 145

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   V++++   +     
Sbjct: 146 LLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDVQKAQIGII----- 200

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               EID ++   S + S     GG  V
Sbjct: 201 ---------------------------------YIDEID-KITRKSENPSITRDVGGEGV 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  L   V     +   +                     + +  D+  ++   G  
Sbjct: 227 QQALLKILEGTVSNVPPQGGRKHP-----------------QQEFIQIDTTNILFICGGA 269

Query: 248 FLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           F D  DK I+ R   + +G                   + K  S   +  L        +
Sbjct: 270 F-DGLDKYILRRTDKSALGFGS----------------ALKDNSSEAEKALLRKVEPHDL 312

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV   L  L++     +L +  ++L+ QYKEL+  + + LD T+++
Sbjct: 313 VK-FGLIPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELDITDEA 371

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           + A+A   +   +     GAR L++VME +L  I +    D     V ID + V 
Sbjct: 372 LHAIARKTIERKT-----GARGLRSVMENILMPIMYDVPNDPTIIRVTIDEDTVE 421


>gi|261346363|ref|ZP_05974007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
 gi|282565677|gb|EFB71212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rustigianii DSM 4541]
          Length = 425

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 162/423 (38%), Gaps = 79/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L +    RL                  
Sbjct: 227 -----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRL------------------ 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                        ++ +GIG + E                 K  S        +      
Sbjct: 264 -------------NTRSGIGFAAE----------------VKGESEKATEGELLTQAEPE 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+
Sbjct: 295 DLIKFGLIPEFIGRLPVVATLTELSEDALIQILKEPKNALTKQYQALFSLEGTELEFREE 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E  L +  +    + + + VV+D   +     
Sbjct: 355 ALVAIAKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEKVVVDENVINEQSE 409

Query: 425 DFP 427
              
Sbjct: 410 PLL 412


>gi|167032911|ref|YP_001668142.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           GB-1]
 gi|189044143|sp|B0KJG7|CLPX_PSEPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166859399|gb|ABY97806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida GB-1]
          Length = 427

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 171/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +       + I       +  L +      +  +   +  I       
Sbjct: 228 -----GGRKHPQQEFLQVDTRNILFICGGAFSGLEK------VIQNRSTKGGIGFGAE-- 274

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + +++ G  +G S   V+ D L          K+G                
Sbjct: 275 ---------VRSKEEGKKVGESLREVEPDDL---------VKFG---------------- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY +L + E + L+F  D
Sbjct: 301 ------LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     +E   VVID   + 
Sbjct: 355 ALKAVARKALERKT-----GARGLRSILEGVLLDTMYEIPSKKEVSKVVIDESVIE 405


>gi|307129928|ref|YP_003881944.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
 gi|306527457|gb|ADM97387.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
          Length = 424

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   ++   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSNNSIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++ + +  G G+              G + + K  S        ++      
Sbjct: 255 ------DKVIEQRTDTGRGI--------------GFNATVKGLSQKATEGELLSQVEPGD 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   LK L++     IL + ++ L  QY+ L K EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L +  +    L+    VVID   +      
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVIDDSVISGQTEP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|262280903|ref|ZP_06058686.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
 gi|262257803|gb|EEY76538.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202]
          Length = 437

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 227 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   +  R    GIG + +   +D    +       +     TD + F     
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF----- 296

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F 
Sbjct: 297 -------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFE 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + ++ A+A  A+  N+     GAR L+++ME VL +  +      +  TV+I+   + 
Sbjct: 350 DSALRAIAKKALERNT-----GARGLRSIMENVLLETMYDLPSRTDVGTVIINEAVIN 402


>gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
 gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium
           vulgare Y25]
          Length = 422

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 168/415 (40%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ  AKR +++A+ N ++R    A   +E+     NILL+GPTG G
Sbjct: 65  TPREICAVLDDYVIGQVHAKRVLSVAVHNHYKRLNHAAKSNNEIELAKSNILLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSDNPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L+    I  R  G G+G          +  V+   V   +  +  + +L        
Sbjct: 251 FAGLERI--IAQRSKGQGMGF------NANVREVDERGVGELFMELEPEDLLKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+      ILT+ ++ L+ QY+ L   E + L FTED
Sbjct: 297 -----GLIPEFVGRLPVIATLTDLDVDALIQILTEPKNALVKQYQRLFDIEAVKLTFTED 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           ++ A+A  A+   +     GAR L+++ME +L D  F    L+    VV++ + V
Sbjct: 352 ALKAIASKAIERKT-----GARGLRSIMEGILLDTMFELPGLETVSEVVVNEDAV 401


>gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis CO72]
          Length = 438

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|251791977|ref|YP_003006697.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533364|gb|ACS96610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter aphrophilus NJ8700]
          Length = 415

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 174/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 65  TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTDDVELGKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+      +  + +  +    
Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIERAEQGIIY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 182 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M      KI       +  L     D++I+     R S+     +G 
Sbjct: 225 ----GGRKHPQQEMLRIDTSKILFICGGAFAGL-----DKVIE----KRTSVATAIGFGA 271

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               E DK                           ++++  +  +  D ++         
Sbjct: 272 EIKSEKDK---------------------------ATLTNLFKQVEPDDLM--------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT+D+
Sbjct: 296 --KYGLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVKLEFTKDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E VL D  +    L+  + VV++   +  +
Sbjct: 354 LIAMAKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVVNESVINDN 405


>gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 424

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 172/417 (41%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P++I+  LD Y+IGQ  AK+ +A+A+ N ++R    + +   EL   NILLVGPTG GK
Sbjct: 67  TPQDILQVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKNSSVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 183 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 207

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+                  V   +I  +     
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR     IG S       ++   +   V     +I ++ ++         
Sbjct: 253 AGLDRI--ISARGEKASIGFS------AVVKNSDDRPVGEVLRNIESEDLVKF------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL++ ++ L+ QY+ L + E I L F ED+
Sbjct: 298 ----GLIPEFIGRLPVLATLEDLDEDSLIRILSEPKNALVKQYQCLFEMEDIELVFHEDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           +  +A  A+   +     GAR L+++ME++L D  F    L+    ++I  + V+  
Sbjct: 354 LREIARRAIIHKT-----GARGLRSIMEKILLDTMFELPVLKGVNGIIISDDVVKGK 405


>gi|329114675|ref|ZP_08243434.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
 gi|326696155|gb|EGE47837.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter
           pomorum DM001]
          Length = 421

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 175/439 (39%), Gaps = 99/439 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R  Q+      E+   NILL+GPTG GK
Sbjct: 64  TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KISKKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   ++  +     
Sbjct: 205 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G  IG   +    D                              H 
Sbjct: 250 AGLDKI--ISARGKGTNIGFGADVRAPDERK----------------------TGEILHD 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+++    ILT+ ++ L+ QY+ L + E + LD
Sbjct: 286 VEPEDLMKFGLIPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMEDVQLD 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE--- 417
           FT+D++ A+AD A+   +     GAR L++++E +L    F    L+  + VV++ +   
Sbjct: 346 FTDDALKAIADRAIVRKT-----GARGLRSILESILMSTMFDLPGLENVEEVVVNRDVAE 400

Query: 418 ------YVRLHIGDFPSET 430
                 YV     + P+E 
Sbjct: 401 GKASPVYVYGKKKEIPAEQ 419


>gi|89055298|ref|YP_510749.1| ATP-dependent protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
 gi|122498234|sp|Q28NI8|CLPX_JANSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88864847|gb|ABD55724.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
          Length = 421

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/398 (25%), Positives = 158/398 (39%), Gaps = 78/398 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 65  TPQEICGVLDDYVIGQAHAKRVLSVAVHNHYKRLNHSDKSDIELAKSNIMLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 180 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 205

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 206 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 250

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G+ +G   +    D   + E                 F       + 
Sbjct: 251 GLDKI--IAQRGKGSAMGFGADVRDPDSKSVGE----------------YFKDLEPEDLL 292

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E + L FT+D++
Sbjct: 293 K-FGLIPEFVGRLPVIATLEDLDEDALVTILTGPKNALVKQYQRLFELEDVKLTFTDDAM 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
            A+A  A+   +     GAR L+++ME +L D  F   
Sbjct: 352 SAIAKRAILRKT-----GARGLRSIMEDILLDTMFDMP 384


>gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9]
 gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9]
          Length = 422

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/417 (25%), Positives = 179/417 (42%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           SPREI   LD+Y+IGQ+ AK+A+++A+ N ++R    +D     EL   NILL+GPTG G
Sbjct: 67  SPREIREALDQYVIGQEQAKKALSVAVYNHYKRLNAKSDDKNEVELSKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+       ++++R  +   
Sbjct: 127 KTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVESIITKLLQKCDYDAQKAQRGIIY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA+              
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLVEGTVANVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                   +  + + +  D+  ++   G
Sbjct: 230 ---------------------------------------RKNPNAEFIQVDTTNILFICG 250

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +KI+  R    GIG   E   ++          +      +T+    I  G  
Sbjct: 251 GAF-DGLEKIIRQRTEKGGIGFGAEVASKNDQK-------AVGELLRDTEPEDLIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L++     ILT+ ++ L  QY++L + EG+ LD   
Sbjct: 301 -------LIPEFIGRLPVVALLEPLDEEALMTILTEPKNALAKQYRKLFEMEGVELDLKP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
            ++ A+A  A+   +     GAR L++++ER L D  +    L+   TVV+D + + 
Sbjct: 354 SALLAIAKQALARRT-----GARGLRSIVERALLDTMYELPSLENVATVVVDEKVID 405


>gi|299771639|ref|YP_003733665.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
 gi|298701727|gb|ADI92292.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           DR1]
          Length = 437

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 227 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   +  R    GIG + +   +D    +       +     TD + F     
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF----- 296

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F 
Sbjct: 297 -------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFE 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + ++ A+A  A+  N+     GAR L+++ME VL +  +      +  TV+I+   + 
Sbjct: 350 DSALRAIAKKALERNT-----GARGLRSIMENVLLETMYDLPSRTDVGTVIINEAVIN 402


>gi|258516486|ref|YP_003192708.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780191|gb|ACV64085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 416

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/434 (23%), Positives = 175/434 (40%), Gaps = 82/434 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + ++    P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R  L   + D EL   NI+++
Sbjct: 53  LDMSDVPKPKEIKEILDQYVIGQESAKKALAVAVYNHYKRINLGGKIDDVELQKSNIVML 112

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 113 GPTGSGKTLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 172

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID ++A  S + S  
Sbjct: 173 GIV--------------------------------------YIDEID-KIARKSENPSIT 193

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     + +  D+  
Sbjct: 194 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQLDTTN 236

Query: 240 MVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           ++   G  F D  DKI+  R     +G   E        + E                  
Sbjct: 237 VLFICGGAF-DGIDKIIQNRTGKKSMGFGAEIKAMREQRIGE-----------------I 278

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           +++          L+PE  GR PV V L  L++     ILT+  + LI QY++L + +G+
Sbjct: 279 LSNILPEDLLKYGLIPEFVGRLPVIVTLDMLDEDALVRILTEPRNALIKQYEKLFELDGV 338

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            ++F  D++  +A  A+  N+     GAR L+ ++E V+ +I +      +    +I+ +
Sbjct: 339 AIEFQADALKCIAKEALRRNT-----GARGLRAILEDVMLNIMYEIPTRDDIAKCIINKD 393

Query: 418 YVRLHIGDFPSETD 431
            +           D
Sbjct: 394 TIEKKEDPVIISVD 407


>gi|170720928|ref|YP_001748616.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida
           W619]
 gi|229484079|sp|B1J693|CLPX_PSEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169758931|gb|ACA72247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           putida W619]
          Length = 427

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 170/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65
           SP+EI   LD+Y+IGQ+ AK+ +++A+ N ++R        DE+     NILL+GPTG G
Sbjct: 67  SPKEISGILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +       + I       +  L +      +  +   +  I       
Sbjct: 228 -----GGRKHPQQEFLQVDTRNILFICGGAFSGLEK------VIQNRSTKGGIGFGAE-- 274

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + +++ G  +G S   V+ D L          K+G                
Sbjct: 275 ---------VRSKEEGKKVGESLREVEPDDL---------VKFG---------------- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT+ ++ L  QY  L + E + L+F  D
Sbjct: 301 ------LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYARLFEMESVDLEFRSD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     +E   VVID   + 
Sbjct: 355 ALKAVARKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVIDESVIE 405


>gi|215769357|dbj|BAH01586.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218190998|gb|EEC73425.1| hypothetical protein OsI_07697 [Oryza sativa Indica Group]
          Length = 645

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/432 (22%), Positives = 173/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R                       D   
Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAV 350

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V+ +++  V            +D                             +++ 
Sbjct: 351 ADFNVQAAQQGMVY-----------ID-----------------------------EVDK 370

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 371 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 415

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG             +  + V++   
Sbjct: 416 -DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLL 474

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + +    IA G         L+PE  GRFP+ V L +LN+     +L + ++ L  Q+
Sbjct: 475 E-SVESGDLIAYG---------LIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQF 524

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L     + L FT+ ++  +A  A++ N+     GAR L+T++E +L D  +   D + 
Sbjct: 525 KKLFSMNNVKLHFTDAALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKS 579

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 580 GEKRIDAVVVDE 591


>gi|85058650|ref|YP_454352.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|123519920|sp|Q2NV78|CLPX_SODGM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|84779170|dbj|BAE73947.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 424

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 164/414 (39%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +    +   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTNNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       ++  GIG S                 + K  S        +A      
Sbjct: 261 ----------RTETNRGIGFS----------------ATVKGSSEKVTKGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILHEPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L +  +        + VVID   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGALLETMYELPSQDSVEKVVIDEAVI 403


>gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp.
           HTCC2601]
          Length = 421

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 168/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSQKSSDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R  G+ +G   +       P   G+    K    + +    +  G    
Sbjct: 251 AGLDRI--IAQRGKGSAMGFGADVRD----PEERGTGEVFK----DLEPEDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 297 -----LIPEFVGRLPVIATLEDLDEDALVTILTAPKNALVKQYQRLFEMEDTQLTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
           + A+A  A+   +     GAR L++++E +L D  F    + E T VV++ E V  
Sbjct: 352 LSAIAKKAIERKT-----GARGLRSILEGILLDTMFELPGMDEVTEVVVNDEAVNS 402


>gi|323144788|ref|ZP_08079362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Succinatimonas hippei YIT 12066]
 gi|322415434|gb|EFY06194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Succinatimonas hippei YIT 12066]
          Length = 428

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 192/431 (44%), Gaps = 86/431 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P E+   LD Y+IGQ +AK+ +++A+ N ++R +   D  D EL   NILL+GPTG GK
Sbjct: 71  TPHELTRHLDDYVIGQDEAKKVLSVAVYNHYKRLKHSMDNSDVELGKSNILLIGPTGSGK 130

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LA+    PF   + T  TE GYVG +VE +I  L+      V +++R  V    
Sbjct: 131 TLLVQTLAKFLNVPFAMSDATTLTEAGYVGEDVENVIVRLLQSCDYNVEKAKRGIVY--- 187

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K ++  VA                
Sbjct: 188 ----IDEIDKIARKSENPSITRDVSGEGVQQALL--KLVEGTVASIPPQGG--------- 232

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                             +    ++I++DT      Q++   G 
Sbjct: 233 ---------------------------------RKHPQQQMIEVDTS-----QILFICGG 254

Query: 247 VFLDEFDKI----VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
            F D  DKI    V+++SG G G    G + D L L E      KY  +  D ++     
Sbjct: 255 AF-DGLDKIVEKRVSKNSGIGFGAEVLG-ENDKLSLTE------KYRKVEPDDLVKF--- 303

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    ++PE  GR PV   L  L++     +L + ++ ++ Q++ +++ EG+ L+F
Sbjct: 304 --------GIIPEFVGRMPVITALSELDRDSLVRVLREPKNAVVRQFETMLRYEGVDLEF 355

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
           TE+++ A+AD+A+  ++     GAR L++V+E +L +  +    + +   +++D + V+ 
Sbjct: 356 TEEALKAIADIAIKRHT-----GARGLRSVVEGLLLNTMYDIPSVNDVAKIIVDEQTVKE 410

Query: 422 HIGDFPSETDM 432
            +     +  +
Sbjct: 411 QLEPKVIKKTL 421


>gi|170078143|ref|YP_001734781.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           PCC 7002]
 gi|238692806|sp|B1XN45|CLPX_SYNP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169885812|gb|ACA99525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7002]
          Length = 443

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 169/423 (39%), Gaps = 84/423 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
            PREI   LD ++IGQ +AK+ +++A+ N ++R  L  D          EL   NILL+G
Sbjct: 79  KPREIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIG 138

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R 
Sbjct: 139 PTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQRG 198

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 199 II--------------------------------------YIDEID-KIARKSENPSITR 219

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +   +I  
Sbjct: 220 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTRNILF 264

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD+   I  R     +G  R G         EGS+   +     T  +L   
Sbjct: 265 ICGGAFVGLDKV--IERRVGKKSMGFVRPGE--------EGSAKEQR-----TAELL--Q 307

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             +        ++PE  GR PV   L  L++     ILT  ++ L+ QYK+L+K + + L
Sbjct: 308 HLSPEDLVKYGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQL 367

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +F   +I A+A  A    +     GAR L+ ++E ++ D+ +     ++     I  E V
Sbjct: 368 EFEPTAIRAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVNRCTITPEMV 422

Query: 420 RLH 422
              
Sbjct: 423 EKR 425


>gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis O35E]
          Length = 438

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|145636236|ref|ZP_01791905.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|145270401|gb|EDK10335.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
          Length = 222

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/222 (52%), Positives = 159/222 (71%)

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
              L+ DE+ +LI+ + + + +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDL
Sbjct: 1   MKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDL 60

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LPLVEGS+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF 
Sbjct: 61  LPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFE 120

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+  ++L  QYK LM TEG+ ++FT +++  +A+ A  +N    +IGARRL TVMER
Sbjct: 121 RILTEPHASLTEQYKALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMER 180

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++ ISFSASD+  +TV IDA YV   +G+     D+  FIL
Sbjct: 181 LMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 222


>gi|120599413|ref|YP_963987.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp.
           W3-18-1]
 gi|146292591|ref|YP_001183015.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
 gi|166215204|sp|A4Y5I3|CLPX_SHEPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215206|sp|A1RL88|CLPX_SHESW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120559506|gb|ABM25433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sp. W3-18-1]
 gi|145564281|gb|ABP75216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens CN-32]
          Length = 426

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 162/419 (38%), Gaps = 86/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS----TKYGSINTDHILFIASG 302
                        SG G G   +G +         S V      KYG             
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKYG------------- 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F
Sbjct: 301 ---------LIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ED++ A+A  A++  +     GAR L++++E +L D  +    +      V+D   V 
Sbjct: 352 REDALKAIAHKAMSRKT-----GARGLRSIVESILLDTMYDIPSVDGVVKAVVDESVVN 405


>gi|83745914|ref|ZP_00942971.1| ClpX [Ralstonia solanacearum UW551]
 gi|300703973|ref|YP_003745575.1| ATPase and specificity subunit of clpx-clpp ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
 gi|83727604|gb|EAP74725.1| ClpX [Ralstonia solanacearum UW551]
 gi|299071636|emb|CBJ42960.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CFBP2957]
          Length = 424

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 179/415 (43%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R   +GIG   E      +   E   V+     +  + ++        
Sbjct: 253 AF-DGLEKIIMQRSDKSGIGFGAE------VKSREERDVNEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +
Sbjct: 355 ALTAIARKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTI 404


>gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 103P14B1]
 gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 101P30B1]
          Length = 438

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|206890826|ref|YP_002248105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|254763870|sp|B5YI39|CLPX_THEYD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206742764|gb|ACI21821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 409

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 170/423 (40%), Gaps = 87/423 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   L+ Y+IGQ+ AK+ +++A+ N ++R        DE+   NI+L+GPTG GKT
Sbjct: 61  TPQEIHKFLNDYVIGQERAKKILSVAVYNHYKRIFKGTS-SDEIQKSNIMLIGPTGTGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++       R Q  
Sbjct: 120 LLAQTLAKFLDVPFAIADATTLTEAGYVGEDVENILLKLLQNANFDIQ-------RAQIG 172

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I   + I        + S TR+V  + ++   +   E           ++N    GG   
Sbjct: 173 IIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIVE---------GTLANIPPQGG--- 220

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                            ++          +   +I  +     V
Sbjct: 221 ----------------------------RKHPQQEYI-------QLDTTNILFICGGAFV 245

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASGAFH 305
            L+E   I  R     IG   E  + D   ++  +      KYG I              
Sbjct: 246 GLEEI--IKKRIGKRTIGFLSETKKIDEENVLSQAEPEDLIKYGMI-------------- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                   PE  GRFPV   L  L++     ILT  ++ L+ QY++L   +G+ L FT+D
Sbjct: 290 --------PEFVGRFPVVATLNQLDEDALIEILTKPKNALVKQYQKLFSIDGVKLTFTDD 341

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E ++ D+ +     +     +I+ + V     
Sbjct: 342 ALRAIAKKAIERKT-----GARALRSILEDIMLDVMYLIPSERGINECIINEDVVNKKAS 396

Query: 425 DFP 427
              
Sbjct: 397 PIL 399


>gi|188534631|ref|YP_001908428.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
 gi|188029673|emb|CAO97552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
          Length = 424

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L +  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEAALLNTMYDLPSVDDVEKVVIDESVI 403


>gi|300691405|ref|YP_003752400.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
 gi|299078465|emb|CBJ51117.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum PSI07]
          Length = 424

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 179/415 (43%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R   +GIG   E      +   E   V+     +  + ++        
Sbjct: 253 AF-DGLEKIIMQRSDKSGIGFGAE------VKSKEERDVNEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +
Sbjct: 355 ALTAIARKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTI 404


>gi|227328850|ref|ZP_03832874.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 424

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 170/414 (41%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       D+G GIG +   V+       EG  +S      N +    I  G    
Sbjct: 261 ----------RTDTGRGIGFNA-TVKGSADKATEGELLS------NVEPGDLIKFG---- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 300 -----LIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    L     VVID   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLDSVDKVVIDESVI 403


>gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis BC7]
          Length = 438

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  A   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYDVQKAEKGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|261494049|ref|ZP_05990552.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496190|ref|ZP_05992596.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308142|gb|EEY09439.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310215|gb|EEY11415.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 415

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 172/418 (41%), Gaps = 81/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPT 62
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R              EL   NILL+GPT
Sbjct: 66  TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSALSNHQTTNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFEAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I        + S TR+V  + ++   +   E           ++N +  
Sbjct: 186 -------FIDEIDKITRKSESASITRDVSGEGVQQALLKLLE---------GTVANINPQ 229

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                        +    +  P          +D   +       + 
Sbjct: 230 GG-----------------------RKHPKGETIP----------VDTSKI-------LF 249

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F    DKIV   +    G+      +      + + +   +  +  + ++     
Sbjct: 250 ICGGAFAG-LDKIVEARTNTQGGIGFAAALKKDKDRQDLTEL---FKQVEPEDLVKF--- 302

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L F
Sbjct: 303 --------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHF 354

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           T+D++ ++A  A++  +     GAR L++++E +L D  +    L  K V I    V 
Sbjct: 355 TKDALISIAQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTIGKGCVE 407


>gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans
           lithotrophicus ES-1]
 gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans
           lithotrophicus ES-1]
          Length = 418

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/410 (25%), Positives = 167/410 (40%), Gaps = 78/410 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +       EL   NILLVGPTG GKT 
Sbjct: 68  PHEICARLDEYVIGQRQAKKILSVAVYNHYKRLKSTDADGVELAKSNILLVGPTGSGKTL 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V      
Sbjct: 128 LAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYDVERAQRGIVY----- 182

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              + I          S TR+V  + ++   +      IE    S               
Sbjct: 183 --IDEIDKISRKSDNPSITRDVSGEGVQQALLKL----IEGTKASIPPQGGRKHPNTEFL 236

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
            ++ S +                    +  L +      +  +   +  I    N     
Sbjct: 237 QVDTSNIL-------------FICGGAFDGLEK------VIRNRSEKAGIGFSAN----- 272

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                 +  RD  N IG    GV+ + L          K+G                   
Sbjct: 273 ------LAKRDESNDIGKVLRGVEPEDL---------IKFG------------------- 298

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L+ L+++    ILT+ ++ L  QY++L   EG+ L+F E  ++
Sbjct: 299 ---LIPEFVGRLPVVATLEGLDEAALIQILTEPKNALTKQYQKLFSMEGVELEFREGVLN 355

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            +A  A+   +     GAR L++++E  L D  F     +    VV+D  
Sbjct: 356 VIAKKALERKT-----GARGLRSILENALLDTMFDLPSAENVSKVVLDEN 400


>gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
 gi|123077615|sp|Q1GGF7|CLPX_SILST RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|99037647|gb|ABF64259.1| ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria sp.
           TM1040]
          Length = 421

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 168/415 (40%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+  K   + S  G G          +     + V   +  +  + +L        
Sbjct: 251 FAGLDKIIKQRGKGSAMGFGAD--------VREESDAGVGETFRDLEPEDLLKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT++
Sbjct: 297 -----GLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 352 ALSAIAKKAIERKT-----GARGLRSILEDILLDTMFELPGMESVTKVVVNEEAV 401


>gi|183601062|ref|ZP_02962555.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
 gi|188019402|gb|EDU57442.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827]
          Length = 425

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/423 (24%), Positives = 171/423 (40%), Gaps = 79/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 66  TPHEIREHLDDYVIGQEQAKKVLSVAVYNHYKRLRNGDTTAEGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L +    RL                  
Sbjct: 227 -----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRL------------------ 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                        ++ +GIG + E V+ +   + EG  ++       T+    I  G   
Sbjct: 264 -------------NTRSGIGFAAE-VKGESDKISEGELLT------QTEPEDLIKFG--- 300

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+
Sbjct: 301 ------LIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLEGTELEFREE 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E  L +  +    ++  + VV+D   +     
Sbjct: 355 ALKAIAKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMEGVEKVVVDENVINEQSE 409

Query: 425 DFP 427
              
Sbjct: 410 PLL 412


>gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
 gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp.
           EE-36]
          Length = 421

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 168/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKDICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR  G+ +G   +   +D   +          G I TD            
Sbjct: 251 AGLDRI--IAARGKGSAMGFGADVRDQDARGI----------GEIFTDL-------EPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D+
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFEIEDTQLTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           + A+A  A+   +     GAR L++++E +L +  F    +   T VV++ E V
Sbjct: 352 LLAIAKRAIERKT-----GARGLRSILEDILLNTMFDLPGMDSVTEVVVNEEAV 400


>gi|88860445|ref|ZP_01135083.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           tunicata D2]
 gi|88817643|gb|EAR27460.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           tunicata D2]
          Length = 427

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 173/414 (41%), Gaps = 78/414 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R +      + EL   NILL+GPTG GKT
Sbjct: 70  PKEIRAHLDDYVIGQDHAKKVLSVAVYNHYKRLKNQDKSSNIELGKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  +A+L   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 130 LLAETMAKLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY---- 185

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 186 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------ 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +        KI       +  L                            
Sbjct: 229 ---GGRKHPQQEFLQVDTSKILFICGGAFAGL---------------------------- 257

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                DK++ + S    G+   G   D+     G S+S  +  +  + ++          
Sbjct: 258 -----DKVIEQRSTKNTGI---GFGVDVKSSAAGRSISESFKDVEPEDLV---------- 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    IL + ++ L  QY  L K E + L+F +D++
Sbjct: 300 -KYGLIPEFIGRLPVVATLTELDEAALVQILNEPKNALTKQYGALFKMENVELEFRDDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A++  +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 359 LAIAKKAMDRKT-----GARGLRSIVEGVLLETMYELPSMEDVSKVVIDETVIK 407


>gi|227113466|ref|ZP_03827122.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 424

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 171/414 (41%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       D+G GIG +   V+       EG  +S      N +    I  G    
Sbjct: 261 ----------RTDTGRGIGFNA-TVKGSADKATEGELLS------NVEPGDLIKFG---- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 300 -----LIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    L+    VVID   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVIDESVI 403


>gi|302671761|ref|YP_003831721.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396234|gb|ADL35139.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio
           proteoclasticus B316]
          Length = 422

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 173/430 (40%), Gaps = 84/430 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---DELMPKNILLVGPTG 63
             P EI + LD Y+IGQ +AK+ +A+++ N ++R   P +      EL   NI+++GPTG
Sbjct: 64  LKPAEIRNFLDEYVIGQDEAKKVLAVSVYNHYKRVLAPKNDDKNDVELQKSNIIMIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++   V 
Sbjct: 124 SGKTYLAQTLAKIINVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQYGIV- 182

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                                                   EID ++   S ++S      
Sbjct: 183 -------------------------------------YIDEID-KITKKSENVSITRDVS 204

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  V    L  +   V     +   +   Q+            LI +DT +     ++  
Sbjct: 205 GEGVQQALLKIVEGTVASVPPQGGRKHPHQE------------LIQIDTSN-----ILFI 247

Query: 244 YGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
            G  F D  DKIV AR   N IG + E   +    + E     T    +           
Sbjct: 248 CGGAF-DGLDKIVEARLDRNSIGFNAEIADKSEREIGEVLKEVTPQDLVK---------- 296

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P+ V L+ L+K     ILT+ ++ L+ QY++L   + + L F
Sbjct: 297 -------FGLIPEFVGRVPITVTLEGLSKEALMRILTEPKNALVKQYQKLFDFDDVKLTF 349

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            ++++  +A +A    +     GAR L+++ME+ + D+ +    D      VI    V  
Sbjct: 350 EDEAVHKIAQMAYERET-----GARGLRSIMEKTMMDVMYEIPSDDTISECVITDASVDG 404

Query: 422 HIGDFPSETD 431
                    D
Sbjct: 405 TSQPLIVHKD 414


>gi|253687444|ref|YP_003016634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259491264|sp|C6DB56|CLPX_PECCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|251754022|gb|ACT12098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 424

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 171/414 (41%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       D+G GIG +   V+       EG  +S      N +    I  G    
Sbjct: 261 ----------RTDTGRGIGFNA-TVKGSADKATEGELLS------NVEPGDLIKFG---- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 300 -----LIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D  +    L+    VVID   +
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVIDESVI 403


>gi|227542943|ref|ZP_03972992.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181165|gb|EEI62137.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 418

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 173/417 (41%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ +AK+ +++A+ N ++R +      +D   EL   NILL+GPTG
Sbjct: 65  TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+++    V 
Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAADFDVKKAEHGIVY 184

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +   E           +++    G
Sbjct: 185 -------IDEIDKITRKGENVSITRDVSGEGVQQALLKILE---------GTVASIPPQG 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G         +  ++ +       I       +  L +      +  + V + S+     
Sbjct: 229 G--------RKHPNQELIQVDTSNILFIASGAFAGLEK------VIQERVGKKSLGF--- 271

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                            G  I  + E    ++L  V+   +  K+G              
Sbjct: 272 -----------------GADIRSNEELENANILQKVQPEDL-VKFG-------------- 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   +  L+K     +LT+ +++L+ QY+++   +   L FT
Sbjct: 300 --------LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFT 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           + ++ A+A+ A+   +     GAR L+ +ME +L  + +     +   V IDA  V 
Sbjct: 352 DGALGAIAEKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVVN 403


>gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
 gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium Y4I]
          Length = 422

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 173/415 (41%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+             + +DT    +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQE------------FLQVDT---TNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I AR  G+ +G   +    D   + E                +F       
Sbjct: 251 FAGLDKI--ISARGKGSAMGFGADVRDNDERGVGE----------------VFKDLEPED 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   LDFT++
Sbjct: 293 LLK-FGLIPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDTELDFTDE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L+++ME +L +  F    +   T VV++ E V
Sbjct: 352 ALKAIARKAIQRKT-----GARGLRSIMEDILLNTMFDLPGMDSVTKVVVNEEAV 401


>gi|134300400|ref|YP_001113896.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum
           reducens MI-1]
 gi|134053100|gb|ABO51071.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Desulfotomaculum reducens MI-1]
          Length = 416

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/433 (24%), Positives = 171/433 (39%), Gaps = 80/433 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ  AKR +A+A+ N ++R  L   + D EL   NI+++
Sbjct: 53  MDMGDLPKPKEIKDILDQYVIGQDSAKRQLAVAVYNHYKRINLGGKVEDVELSKSNIVML 112

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 113 GPTGCGKTLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 172

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID ++A  S + S  
Sbjct: 173 GIV--------------------------------------YIDEID-KIARKSENPSIT 193

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +   Q+             I +DT    +I 
Sbjct: 194 RDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE------------FIQLDT---TNIL 238

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       +D+   I  R     +G   E   +    + E                  +
Sbjct: 239 FICGGAFDGIDKI--IQNRTGKKQLGFGAEIETQKEKKIGE-----------------IL 279

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           A+          L+PE  GR PV V L +L++     ILT+ ++ L  QY++L + +G+ 
Sbjct: 280 ANILPEDLLKFGLIPEFVGRLPVIVTLDALDEEALVRILTEPKNALTKQYQKLFELDGVD 339

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+   +S+  +A  A+   +     GAR L+ +ME  +  I +     ++   VVI  + 
Sbjct: 340 LELQPESLREVAKEALKRKT-----GARGLRAIMEEAMLGIMYDIPSREDISKVVITKDA 394

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 395 ILKKSEPLLITMD 407


>gi|227488330|ref|ZP_03918646.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091692|gb|EEI27004.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 418

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 173/417 (41%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ +AK+ +++A+ N ++R +      +D   EL   NILL+GPTG
Sbjct: 65  TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+++    V 
Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAADFDVKKAEHGIVY 184

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +   E           +++    G
Sbjct: 185 -------IDEIDKITRKGENVSITRDVSGEGVQQALLKILE---------GTVASIPPQG 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G         +  ++ +       I       +  L +      +  + V + S+     
Sbjct: 229 G--------RKHPNQELIQVDTSNILFIASGAFAGLEK------VIQERVGKKSLGF--- 271

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                            G  I  + E    ++L  V+   +  K+G              
Sbjct: 272 -----------------GADIRSNEELENANILQKVQPEDL-VKFG-------------- 299

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   +  L+K     +LT+ +++L+ QY+++   +   L FT
Sbjct: 300 --------LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFT 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           + ++ A+A+ A+   +     GAR L+ +ME +L  + +     +   V IDA  V 
Sbjct: 352 DGALGAIAEKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVVN 403


>gi|323495055|ref|ZP_08100144.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
 gi|323310712|gb|EGA63887.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           brasiliensis LMG 20546]
          Length = 427

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 167/415 (40%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PR+I + LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG GK
Sbjct: 68  PRDIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG   E   +D                  T   LF+      +
Sbjct: 263 ----------RVATGTGIGFGAEVRSKDETK---------------TVGELFMQVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELENSELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 357 LRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDESVIK 406


>gi|319425893|gb|ADV53967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           putrefaciens 200]
          Length = 426

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 162/419 (38%), Gaps = 86/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS----TKYGSINTDHILFIASG 302
                        SG G G   +G +         S V      KYG             
Sbjct: 263 ---------AHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKYG------------- 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L++     IL+  ++ L  QY  L + EG+ L+F
Sbjct: 301 ---------LIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ED++ A+A  A++  +     GAR L++++E +L D  +    +      V+D   V 
Sbjct: 352 REDALKAIAHKAMSRKT-----GARGLRSIVESILLDTMYDIPSVDGVVKAVVDESVVN 405


>gi|197284028|ref|YP_002149900.1| ATP-dependent protease ATP-binding subunit ClpX [Proteus mirabilis
           HI4320]
 gi|227358101|ref|ZP_03842443.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|238693153|sp|B4EU54|CLPX_PROMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194681515|emb|CAR40395.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227161836|gb|EEI46868.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 423

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 165/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKADGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K ++  VA                
Sbjct: 183 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLVEGTVASVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +  + RL                   
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVVAQRL------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                       ++ +GIG   E                 K  +        +A      
Sbjct: 263 ------------NTHSGIGFGAE----------------VKSQNEKASEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  LN+     IL + ++ L  QY+ L K EG+ L+F +D+
Sbjct: 295 LIKFGLIPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A++  +     GAR L++++E  L D  +     +  + VVID   +      
Sbjct: 355 LTAIAKKAMSRKT-----GARGLRSIVEAALLDTMYDLPSFENAEKVVIDENVINGKSEP 409

Query: 426 FP 427
             
Sbjct: 410 LI 411


>gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
 gi|149752861|gb|EDM62792.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814]
          Length = 419

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 171/415 (41%), Gaps = 79/415 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRVMSGKELGVELGKSNILMLGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++ G PF   + T  TE GYVG +VE I+  ++  A   +  +    +    
Sbjct: 126 TLLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGIIY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +    I+  VA+               
Sbjct: 183 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKI--IEGTVANVPPQGGRKHPHQE-- 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                        M       I       +  + +      I    + + SI        
Sbjct: 235 -------------MIQIDTTNILFICGGAFEGIEK------IVEKRIDQKSIGFNAEIAE 275

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D+ D                   R L  ++    V  K+G                 
Sbjct: 276 KHEDDVD-------------------RLLQQILPQDLV--KFG----------------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L+K     ILT+ ++ L  QY+++++ +G+ L F + +
Sbjct: 298 -----LIPELVGRVPVTVALEMLDKDALVKILTEPKNALTKQYQKMLELDGVKLTFDKKA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++ +A+ ++   +     GAR L+ +ME ++ DI + A  D   KT  I  + V+
Sbjct: 353 LETIAETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKTCRITEDVVK 402


>gi|256396399|ref|YP_003117963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
 gi|256362625|gb|ACU76122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Catenulispora
           acidiphila DSM 44928]
          Length = 438

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 173/434 (39%), Gaps = 88/434 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILL 58
            P+EI   LD Y+IGQ++AK+++++A+ N ++R Q     R+         EL   NILL
Sbjct: 63  KPKEIYDFLDEYVIGQENAKKSLSVAVYNHYKRVQAGDYQRERGGRRGEQIELAKSNILL 122

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++++ 
Sbjct: 123 LGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKKAE 182

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              +         + I          S TR+V  + ++   +   E  +           
Sbjct: 183 TGIIY-------IDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVSSVPPQGG--- 232

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   +         +   V   +  L     D+++D   V++  +
Sbjct: 233 --------------RKHPHQEFLQIDTTNVLFIVAGAFEGL-----DKIVDS-RVNKRGM 272

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                    +                                          ++T  +  
Sbjct: 273 GFTAQLRSRY-----------------------------------------DVDTTDV-- 289

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
            A           ++PE  GR PV   +  L+++    IL +  + LI QY++LM+ +G+
Sbjct: 290 FADVLPEDLLKYGMIPEFVGRLPVVTSVHKLDRAALVRILVEPRNALIKQYQKLMELDGV 349

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L F +D+++A+AD A+   +     GAR L+ +ME VL  + +      +  TVVI  E
Sbjct: 350 ELVFEDDAVEAIADQAILRGT-----GARGLRAIMEEVLMSVMYEVPSHSDVGTVVITGE 404

Query: 418 YVRLHIGDFPSETD 431
            VR H+       D
Sbjct: 405 VVREHVLPTLVPRD 418


>gi|91793846|ref|YP_563497.1| ATP-dependent protease ATP-binding subunit [Shewanella
           denitrificans OS217]
 gi|123060778|sp|Q12LA2|CLPX_SHEDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91715848|gb|ABE55774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           denitrificans OS217]
          Length = 426

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/415 (24%), Positives = 167/415 (40%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKRLRNGTTKEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G G G   +G Q         +++S   G +  + ++         
Sbjct: 263 ---------AHTGTGIGFGAEVKGEQDK-------ATISQILGQVEPEDLV--------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++S    IL+  ++ L  QY  L + E + L+F ED+
Sbjct: 298 --KYGLIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +    ++     VID   V+
Sbjct: 356 LKAIAKKAMSRKT-----GARGLRSIVEGILLDTMYDLPTVKGVVKAVIDESVVK 405


>gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
 gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata
           E-37]
          Length = 421

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/402 (25%), Positives = 159/402 (39%), Gaps = 79/402 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPREICEVLDDYVIGQMKAKRVLSVAVHNHYKRLNHSQKSSDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R  G+ +G   +    D         V   +  +  + +L         
Sbjct: 251 AGLDRI--IAQRGKGSAMGFGADVRDND------DRGVGEIFRDLEPEDLLKF------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 296 ----GLIPEFVGRLPVVATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTDLTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           + A+A  A+   +     GAR L++++E +L D  F    + 
Sbjct: 352 LSAIAKKAIQRKT-----GARGLRSILEGILLDTMFELPGMD 388


>gi|85713355|ref|ZP_01044369.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
 gi|85692822|gb|EAQ30806.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica
           OS145]
          Length = 425

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 165/414 (39%), Gaps = 80/414 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI   LD Y+IGQ+ AK+ +++A+ N ++R +     +D  EL   NILL+GPTG GK
Sbjct: 67  PKEIRKHLDDYVIGQERAKKVLSVAVYNHYKRLRNAGKGKDDVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 127 TFLAETMARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAERGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L R    RL                 GI
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFVCGGAFAGLERVIEQRL-------------ATGTGI 269

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F            G  +       Q +++  VE   +  +YG                 
Sbjct: 270 GF------------GAQVKSPNSAAQSEIISQVEPEDL-VRYG----------------- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  LN+     IL + ++ L  QY  L + E + L+F ED+
Sbjct: 300 -----LIPEFIGRLPVVATLDELNEDALVEILREPKNALTKQYSALFEMEDVELEFREDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+N  +     GAR L++++E VL    +    +     VV+D   V
Sbjct: 355 LRAIAKKAMNRKT-----GARGLRSIVEGVLLSTMYDLPSIDGVSKVVVDESVV 403


>gi|323498277|ref|ZP_08103279.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
 gi|323316705|gb|EGA69714.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis
           DSM 21326]
          Length = 427

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 163/415 (39%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG GK
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG   E   +D                  T   LF       +
Sbjct: 263 ----------RVATGTGIGFGAEVRSKDETK---------------TVGELFTQVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E VL +  +    + +   VVID   + 
Sbjct: 357 LRAIAKKAMERKT-----GARGLRSILESVLLETMYELPSMNDVSKVVIDESVIN 406


>gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 427

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 163/415 (39%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG GK
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG   E   +D                  T   LF       +
Sbjct: 263 ----------RVATGTGIGFGAEVRSKDETK---------------TVGELFTQVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDSELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E VL +  +    + +   VVID   + 
Sbjct: 357 LRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSMNDVSKVVIDESVIN 406


>gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
 gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme
           DSM 15981]
          Length = 438

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/418 (23%), Positives = 177/418 (42%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R      +  ++   NIL++GPTG GK
Sbjct: 68  LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTACQHVDVDVQKSNILMIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIARAEYGII---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 184 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 209 VQQALLKILEGTVASVPPQGGRKHPHQELL---------------QIDTTNILFIVGGAF 253

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              D  +KIV AR S   IG + E V ++ + + E                L        
Sbjct: 254 ---DGLEKIVEARLSAGSIGFNAEIVDKNDMNIDE----------------LLKKVEPKD 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++   L+PE  GR PV V L+SL +     IL++ ++ LI QY++L++ + + L+FT +
Sbjct: 295 LTK-FGLIPEFIGRVPVNVSLQSLTRDAMVRILSEPKNALIKQYQKLLELDNVKLEFTPE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +++ +A +AV+       IGAR L++++E V+ D+ +    D       I  + V+  
Sbjct: 354 ALEEIAQLAVDRK-----IGARGLRSIIEGVMMDLMYEIPSDESIGICTITRDVVKNR 406


>gi|331695809|ref|YP_004332048.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950498|gb|AEA24195.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia
           dioxanivorans CB1190]
          Length = 426

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 174/436 (39%), Gaps = 95/436 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------DELMPK 54
           +KL     P EI   LD+Y++GQ   KR +++A+ N ++R Q     R       EL   
Sbjct: 56  VKLDELPKPAEIHDFLDQYVVGQSATKRTLSVAVYNHYKRIQAGDKSRGSDGDGVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           + +       DEV + A                  S TR+V  + ++   +   E     
Sbjct: 176 KRAETGIIYIDEVDKIARK------------SENPSITRDVSGEGVQQALLKILEGT--- 220

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
             +         P    + I   + LF               V   +  L +        
Sbjct: 221 TASVPPQGGRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEKI------- 259

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
                                    I  R    G+G   E   +  L   E         
Sbjct: 260 -------------------------IGDRVGRRGLGFGAEIRSKTDLESSES-------- 286

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             +T     I  G         L+PE  GR PV   + SL+K     ILT+  + L+ QY
Sbjct: 287 FADTMPEDLIKFG---------LIPEFIGRLPVVASVTSLDKEALVKILTEPRNALVKQY 337

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L + +G+ L+FT+D+++A+AD A+   +     GAR L+ +ME VL  + +      +
Sbjct: 338 RKLFEMDGVELEFTDDALEAVADQAILRGT-----GARGLRAIMEEVLLPVMYDIPSRDD 392

Query: 410 K-TVVIDAEYVRLHIG 424
              VV+  + VR ++ 
Sbjct: 393 VAKVVVTEDTVRSNVN 408


>gi|331003804|ref|ZP_08327296.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411996|gb|EGG91393.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 427

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/416 (23%), Positives = 173/416 (41%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ  AK+ +++A+ N ++R +       E+   NIL++GPTG GK
Sbjct: 63  LKPKEIKNFLDEYVIGQDSAKKVLSVAVYNHYKRIKSKKSAEVEIQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDINRAEYGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +                     + +H D+  ++   G 
Sbjct: 204 VQQALLKILEGSMASVPPQGGRKHP-----------------QQELIHIDTTNILFICGG 246

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R S   IG + + V+++   + E                LF       
Sbjct: 247 AF-DGLEKIVENRLSKGSIGFNSDVVEKNSKSVDE----------------LFKMVLPGD 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++   L+PE  GR PV V L  L+K     I+T  ++ +  QY++L + + + L+F E 
Sbjct: 290 LTK-FGLIPEFIGRVPVTVSLDMLDKDALVQIMTKPKNAITKQYQKLFELDDVKLEFDEK 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ +A++A+        IGAR L++++E V+ D+ +    D       I  E + 
Sbjct: 349 AVEEVANLALERK-----IGARGLRSILEGVMTDMMYEIPSDPNIGICTITKETID 399


>gi|124266486|ref|YP_001020490.1| ATP-dependent protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
 gi|166214784|sp|A2SFB6|CLPX_METPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|124259261|gb|ABM94255.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylibium
           petroleiphilum PM1]
          Length = 423

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/425 (24%), Positives = 172/425 (40%), Gaps = 85/425 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ+ AKR +A+A+ N ++R +           EL   NILL+GPTG 
Sbjct: 69  PGEIKASLDQYVIGQEPAKRTLAVAVYNHYKRLKHVQGVGKKEDVELAKSNILLIGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 129 GKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQRGIVY- 187

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 188 ------IDEIDKISRKADNPSITRDVSGEGVQQALLKLVE-------------------- 221

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 222 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 252

Query: 245 GIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  +K I  R   +GIG       +          VS  +  +  + ++      
Sbjct: 253 GGAF-DGLEKVIQNRSEKSGIGFGASVQSKTERK------VSEVFREVEPEDLIKF---- 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L  L +     ILT+ ++ L+ QY++L   +G+ L+  
Sbjct: 302 -------GLIPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFAMDGVELEIR 354

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
             ++ A+A  A+   +     GAR L+++ME  L D  F    +   + VV+D   +  H
Sbjct: 355 PSALTAIAQKALARKT-----GARGLRSIMEHSLMDTMFDLPTMDGVQKVVLDEHTIEEH 409

Query: 423 IGDFP 427
                
Sbjct: 410 TKPLL 414


>gi|212709198|ref|ZP_03317326.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
 gi|212688110|gb|EEB47638.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM
           30120]
          Length = 425

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 160/423 (37%), Gaps = 79/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 227 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 255

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK++ +      G+              G +   K  S        +      
Sbjct: 256 -------DKVIGQRLNTRSGI--------------GFAAQVKGESEKATEGELLTQAEPE 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F E+
Sbjct: 295 DLIKFGLIPEFIGRLPVVATLTELSEEALIQILKEPKNALTKQYQALFNLEGTELEFREE 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E  L +  +    + + + VV+D   +     
Sbjct: 355 ALTAIAKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEKVVVDENVINEQSE 409

Query: 425 DFP 427
              
Sbjct: 410 PLL 412


>gi|188534633|ref|YP_001908430.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia
           tasmaniensis Et1/99]
 gi|188029675|emb|CAO97554.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Erwinia tasmaniensis Et1/99]
          Length = 424

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++   +G G+              G   S K  S        +A      
Sbjct: 255 ------DKVVSQRVDSGSGI--------------GFGASVKGKSEKATEGELLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A+ A+   +     GAR L++++E  L +  +    + + + VVID   +
Sbjct: 355 LKAIANKAMLRKT-----GARGLRSIVEAALLNTMYDLPSVDDVEKVVIDESVI 403


>gi|304413825|ref|ZP_07395242.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
 gi|304283545|gb|EFL91940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
          Length = 423

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 162/422 (38%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+A+A+A+ N ++R     ++   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKALAVAVYNHYKRLCNGDSNNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYNVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 183 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G     K           +       
Sbjct: 255 ------DKVISQRLNTGTGI--------------GFGAIVKSVCEKPSEGELLRQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  LN+     IL + ++ L  QY+ L   E + L+FTE++
Sbjct: 295 LIKFGLIPEFIGRLPVVTTLTELNQEALIKILKEPKNALTKQYQALFNLESVELEFTEEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E  L D  +    +++   VV+D   +      
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEKVDKVVVDESAIDGQSAP 409

Query: 426 FP 427
             
Sbjct: 410 LL 411


>gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella
           catarrhalis 46P47B1]
          Length = 438

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P+E+ + LD Y+IGQ  AK+A+A+A+ N ++R ++  D +D    EL   NILL+GPTG
Sbjct: 88  KPKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTG 147

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I++ L+  +   V+++ +  + 
Sbjct: 148 SGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYDVQKAEQGIIY 207

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA+            
Sbjct: 208 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQGG------ 252

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I M+  
Sbjct: 253 ------------------------RKHPRQE---------------MIQVDTSNILMIVG 273

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG          +   + SS++  +  +  + ++      
Sbjct: 274 GAFAGLDKV--IRQRTEKTGIGF------HADVKAQDESSITELFREVEAEDLIKF---- 321

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG+ L F 
Sbjct: 322 -------GLIPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFE 374

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            +++ A+A  A    +     GAR L++++E  L D  +    +     V++    +  
Sbjct: 375 PEALTAIAKRAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAEVIVTKGVIES 428


>gi|291533221|emb|CBL06334.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas
           hypermegale ART12/1]
          Length = 208

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/208 (53%), Positives = 161/208 (77%)

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           M+++ +++I++ E  GI+FLDE DK+  + S +G  VSREGVQRD+LP+VEGS+VSTKYG
Sbjct: 1   MESIAQEAIELAERNGIIFLDEIDKVAVKGSSSGPDVSREGVQRDILPIVEGSTVSTKYG 60

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF+ ILT+  + L+ QY
Sbjct: 61  QMKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLTEEDFKRILTEPTNALLKQY 120

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K L+ TEG+ ++FT+D+I+ LA VA  +N  + +IGARRL T+ME++LED+SF A +L+E
Sbjct: 121 KALLATEGVSIEFTDDAIERLAQVACEVNEQMENIGARRLHTIMEKLLEDLSFDAPELEE 180

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           K VVI+A+YV   +G      D+  FIL
Sbjct: 181 KNVVINADYVNEKLGGIVKNRDLSQFIL 208


>gi|218247704|ref|YP_002373075.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           8801]
 gi|257060959|ref|YP_003138847.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           8802]
 gi|226706582|sp|B7JW74|CLPX_CYAP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218168182|gb|ACK66919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 8801]
 gi|256591125|gb|ACV02012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 8802]
          Length = 448

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 175/436 (40%), Gaps = 96/436 (22%)

Query: 2   KLTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELM 52
           +L+FN    PREI   LD Y+IGQ +AK+ +++A+ N ++R  L +       +   EL 
Sbjct: 76  RLSFNQIPKPREIKKYLDEYVIGQDEAKKVLSVAVYNHYKRLSLASKPGEETSEDHIELQ 135

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA  
Sbjct: 136 KSNILLMGPTGSGKTLLAQTLAQILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADL 195

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V E++R  +                                         EID ++A  
Sbjct: 196 DVEEAQRGII--------------------------------------YIDEID-KIARK 216

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S + S      G  V    L  L   +     +   +   Q C                 
Sbjct: 217 SENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------Q 261

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   +I  +     V LD+   I  R     +G  R G                      
Sbjct: 262 IDTSNILFICGGAFVGLDKV--IEQRRGKKSMGFIRPGDTNQSKEK-------------- 305

Query: 293 TDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                  A+     + P DL     +PE  GR PV   L+ L++     ILT   + L+ 
Sbjct: 306 ------RAADLMQQAEPDDLVKFGMIPEFVGRIPVMASLEPLDEETLIAILTQPRNALVK 359

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY++L+K + + L+F +D++ A+A  A    +     GAR L+ ++E ++ D+ +     
Sbjct: 360 QYQKLLKMDNVQLEFNKDAVRAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSR 414

Query: 408 QE-KTVVIDAEYVRLH 422
           ++ +  +I  E V   
Sbjct: 415 KDVQRCLITKEMVEQR 430


>gi|332528100|ref|ZP_08404131.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax
           benzoatilyticus JA2]
 gi|332112671|gb|EGJ12464.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax
           benzoatilyticus JA2]
          Length = 423

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 171/423 (40%), Gaps = 94/423 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P EI + LD+Y+IGQ  AKR +++A+ N ++R +          EL   NILL+GPTG G
Sbjct: 69  PSEIKTSLDQYVIGQDVAKRTLSVAVYNHYKRLKHMGAGGKDEVELTKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+L   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V   
Sbjct: 129 KTLLAQTLAKLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYDVERAQRGIVY-- 186

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E                     
Sbjct: 187 -----IDEIDKISRKADNPSITRDVSGEGVQQALLKLVE--------------------- 220

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                      + V   G +K                      + D +  D+  ++   G
Sbjct: 221 --------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFICG 252

Query: 246 IVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K I  R   +GIG               G++V +K             S  F
Sbjct: 253 GAF-DGLEKVIQGRTEKSGIGF--------------GATVHSKSEK--------RVSDLF 289

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE+ GR PV   L  L +     ILT+ ++ L+ QY++L   +G+ 
Sbjct: 290 REVEPEDLIKFGLIPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFGMDGVE 349

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEY 418
           L+    ++ A+A  A+   +     GAR L+++ME  L D  F    L     VVID   
Sbjct: 350 LEIRPSALSAIARKALARKT-----GARGLRSIMEHALIDTMFDLPTLDGVAKVVIDEHI 404

Query: 419 VRL 421
           +  
Sbjct: 405 IED 407


>gi|50083773|ref|YP_045283.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp.
           ADP1]
 gi|61211483|sp|Q6FEP7|CLPX_ACIAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49529749|emb|CAG67461.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ADP1]
          Length = 436

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 179/419 (42%), Gaps = 83/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +       +    E+   NILL+GPT
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKAGQSGHVSKHEVEIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  +
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGII 181

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  VA            
Sbjct: 182 Y-------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG----- 227

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+             I +DT    +I  + 
Sbjct: 228 -------------------------RKHPQQE------------FIQIDT---SNILFIC 247

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 L++   +  R    GIG + E  ++D    +       +     TD + F    
Sbjct: 248 GGAFAGLEKI--VQQRHEKGGIGFNAEVKKKDETKKLAELFRQVE----PTDLVKF---- 297

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L+ L+++    ILT+ ++ L  QY+ L + E + L F
Sbjct: 298 --------GLIPEFIGRLPVIATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVF 349

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            E ++ A+A  A+  N+     GAR L+++ME VL +  +     ++  TVV++   +R
Sbjct: 350 EESALRAIAKKALERNT-----GARGLRSIMENVLLETMYDLPSRKDIGTVVVNEAVIR 403


>gi|84686589|ref|ZP_01014482.1| ATP-dependent protease ATP-binding subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665502|gb|EAQ11979.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 423

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 164/418 (39%), Gaps = 91/418 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R    A   DE+     NILL+GPTG G
Sbjct: 66  TPQEICGVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKHGDEIELAKSNILLIGPTGCG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 126 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 183 -----------------------------------YIDEVD-KITRKSDNPSITRDVSGE 206

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 207 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 251

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD    I  R  G+ IG   +        + E                       F 
Sbjct: 252 FAGLDRI--IAQRGKGSAIGFGADVKDEQARKIGE----------------------VFQ 287

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P D     L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L
Sbjct: 288 ELEPEDLLKFGLIPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDAKL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            FT+D++ A++  A+   +     GAR L+++ME +L D  F    L+    VV++ E
Sbjct: 348 TFTDDALLAISKKAIQRKT-----GARGLRSIMEDILLDTMFDLPALEGVDEVVVNEE 400


>gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus
           nematophila ATCC 19061]
          Length = 423

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 160/402 (39%), Gaps = 77/402 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +    +   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTNNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V++      G+              G S + K  S        +A      
Sbjct: 255 ------DKVVSQRLNVSSGI--------------GFSATVKGESEKATEGQLLAQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  LN+     IL + ++ L  QY+ L   EG+ L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELNEEALIQILQEPKNALTKQYQALFNLEGVELEFRKEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           + A+A  A+   +     GAR L++++E VL D  +    ++
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSME 391


>gi|86148884|ref|ZP_01067135.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218710173|ref|YP_002417794.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio splendidus
           LGP32]
 gi|254763873|sp|B7VHZ9|CLPX_VIBSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|85833327|gb|EAQ51534.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222]
 gi|218323192|emb|CAV19369.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           splendidus LGP32]
          Length = 426

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 167/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKRLRNGDTTAEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLVEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L     D++I+                
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ--------------- 262

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                        ++G+GIG   E   +D                  T   LF       
Sbjct: 263 -----------RVETGSGIGFGAEVRSKDETK---------------TIGELFTQVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED
Sbjct: 297 LVK-YGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFRED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+N  +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 356 ALRAIAKKAMNRKT-----GARGLRSILEGVLLETMYELPSSTDVSKVVIDESVIN 406


>gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
 gi|238689116|sp|B1Y6H2|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix
           cholodnii SP-6]
          Length = 424

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/420 (25%), Positives = 172/420 (40%), Gaps = 85/420 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RDELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQ  AKR +++A+ N ++R +  AD       EL   NILL+GPTG 
Sbjct: 69  PSEIKTLLDQYVIGQDAAKRTLSVAVYNHYKRLKHMADKGKGEEVELAKSNILLIGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 129 GKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQRGIVY- 187

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 188 ------IDEIDKISRKADNPSITRDVSGEGVQQALLKLVE-------------------- 221

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 222 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 252

Query: 245 GIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  +K I  R   +GIG          +      SVS  +  I  + ++      
Sbjct: 253 GGAF-DGLEKVIANRSEKSGIGFG------ATVKSKAERSVSEVFRQIEPEDLIKF---- 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE+ GR PV   L  L +     ILT+ ++ L+ QY+ L   +G+ L+  
Sbjct: 302 -------GIIPELVGRLPVIATLGELTEDALVQILTEPKNALLKQYQRLFGMDGVELEIR 354

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
              + A+A  A+   +     GAR L++++E+ L D  F    +     VV+D   +  +
Sbjct: 355 PSGLAAIAQKALKRKT-----GARGLRSIVEQALMDTMFELPAMDGVAKVVVDENTIEDN 409


>gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 10329]
          Length = 426

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKN-------ETKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 355 DALRAIAKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSKVVIDESVIN 406


>gi|148977889|ref|ZP_01814442.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145962835|gb|EDK28107.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 426

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 167/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKRLRNGDTTAEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLVEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L     D++I+                
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ--------------- 262

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                        ++G+GIG   E   +D                  T   LF       
Sbjct: 263 -----------RVETGSGIGFGAEVRSKDETK---------------TIGELFTQVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED
Sbjct: 297 LVK-YGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFRED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A++  +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 356 ALRAIAKKAMSRKT-----GARGLRSILEGVLLETMYELPSSTDVSKVVIDESVIN 406


>gi|255321157|ref|ZP_05362323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SK82]
 gi|255301711|gb|EET80962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SK82]
          Length = 438

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 171/420 (40%), Gaps = 83/420 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +        + + E+   NILL+GPT
Sbjct: 62  KPHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGQKTEDKVEIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   + ++++  +
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDIEKAQKGII 181

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  VA            
Sbjct: 182 Y-------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG----- 227

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+                  V   ++  + 
Sbjct: 228 -------------------------RKHPQQEFI---------------QVDTSNVLFIC 247

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 L++   +  R    GIG + E   +D    +                 LF    
Sbjct: 248 GGAFSGLEKI--VQHRQEKGGIGFTAEVKSKDETKKLAE---------------LFRQVE 290

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
              + +   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F
Sbjct: 291 PADLVK-FGLIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVF 349

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            + ++ A+A  A+  N+     GAR L++++E VL +  +      +  TVVI+   +  
Sbjct: 350 EDSALRAVAKKALERNT-----GARGLRSILENVLLETMYDLPSRNDVGTVVINEAVIND 404


>gi|256823169|ref|YP_003147132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella
           koreensis DSM 16069]
 gi|256796708|gb|ACV27364.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella
           koreensis DSM 16069]
          Length = 422

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 172/418 (41%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63
            P+EI   L++Y+IGQ  AK+ +++A+ N ++R +           EL   NILL+GPTG
Sbjct: 64  KPQEIAEFLEQYVIGQDRAKKVLSVAVYNHYKRLESEPASSEHKDVELGKSNILLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V 
Sbjct: 124 SGKTLLAETLARMLEVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY 183

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 184 -------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------ 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  V   +I  V  
Sbjct: 229 ------------------------RKHPQQEFL---------------QVDTGNILFVCG 249

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   I  R    GIG        D+  + EG ++     ++  D ++      
Sbjct: 250 GAFAGLEKI--IQERTEKGGIGFGA-----DVKQVKEGRAIGEMLKAVEPDDLVKF---- 298

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P+   L+ L++     IL + ++ L  QY +L   E + L+F 
Sbjct: 299 -------GLIPEFIGRLPIVTTLQELDEEALVRILIEPKNALTKQYSKLFSLENVDLEFR 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +D++ A+A  A+   +     GAR L++++E +L D  ++   L+    V IDA  V+
Sbjct: 352 KDALVAIAHKAMQRRT-----GARGLRSILEEILLDTMYNLPSLEGVSKVCIDAAVVK 404


>gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
 gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
          Length = 426

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKN-------ESKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 355 DALRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSKVVIDESVIN 406


>gi|162451420|ref|YP_001613787.1| ATP-dependent protease ATP-binding subunit ClpX [Sorangium
           cellulosum 'So ce 56']
 gi|161162002|emb|CAN93307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sorangium
           cellulosum 'So ce 56']
          Length = 418

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/422 (25%), Positives = 168/422 (39%), Gaps = 90/422 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I + LD Y++GQ  AK+ +A+A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 66  KPADIKATLDEYVVGQNRAKKILAVAVHNHYKRIDSRVSSDDVELSKSNILLLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE II  L+  A + V  ++R  V    
Sbjct: 126 TLLAQTLAKIINVPFAIADATTLTEAGYVGEDVENIIVQLLQNADHDVERAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIIE---------------------- 216

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K  +                   D   V   +I  +     
Sbjct: 217 -------GTIANVPPKGGRKHPQQ------------------DFLQVDTTNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           V LD+   I  R   N +G   +   +                        F       V
Sbjct: 252 VGLDQI--IQRRIGQNTLGFGADIKAKK----------------------DFKLGDLLSV 287

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            +P D     L+PE  GR PV   L  LN+     ILT  +++L+ QY++L + +G+ + 
Sbjct: 288 VQPEDLLKFGLIPEFIGRLPVVATLHELNEEALIDILTKPKNSLVKQYQKLFEMDGVKVK 347

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FT  ++ A+A  A+  NS     GAR L+ ++E  + DI +        K VV+  + + 
Sbjct: 348 FTRGALVAVARQALERNS-----GARGLRAILESAMLDIMYDVPSRTGIKEVVVSEDVIV 402

Query: 421 LH 422
            H
Sbjct: 403 KH 404


>gi|299066732|emb|CBJ37926.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Ralstonia solanacearum CMR15]
          Length = 424

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 179/415 (43%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R   +GIG   E      +   E   V+     +  + ++        
Sbjct: 253 AF-DGLEKIITQRSDKSGIGFGAE------VKSKEERDVNEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +
Sbjct: 355 ALTAIALKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTI 404


>gi|332992308|gb|AEF02363.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas sp.
           SN2]
          Length = 425

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 167/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  KPSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 252

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  ++   + +G G G + +    +   + E                LF       
Sbjct: 253 AGLDKVIEQRAQKGTGIGFGAAVKSKSENTAQISE----------------LFKQVEPQD 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D
Sbjct: 297 LVK-YGLIPEFIGRLPVVTSLEELNEEALIQILKEPKNAITKQYSALFDMEDVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     +    VVID   +R
Sbjct: 356 ALHAIAKKAMERKT-----GARGLRSIVEAVLLDTMYELPSAVDVSKVVIDETVIR 406


>gi|299535609|ref|ZP_07048930.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
 gi|298728809|gb|EFI69363.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
          Length = 423

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 183/417 (43%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GK
Sbjct: 63  KPKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDIELAKSNIVLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDI------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -ERAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHPHQEFL---------------QIDTTNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D  + I+ R    G  V   G   +++ + EGS +S     I  D + F        
Sbjct: 249 ---DGIETIIKR--RQGEKVIGFGSDPNIVDVDEGSIMS---KLIPEDLLKF-------- 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ LN++    ILT+ ++ L  QY+++++ +G+ L+F ED+
Sbjct: 293 ----GLIPEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEDA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E  + D+ +     ++ K  +I A+ +   
Sbjct: 349 LVAIAKEAIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTITDK 400


>gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 414

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 55  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 115 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 173 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 217

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 218 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 240

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 241 FAGLDKVIEQRVATGTGIGFGAEVRSKN-------ETKTVGELFTQVEPEDLV------- 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F E
Sbjct: 287 ----KYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFRE 342

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 343 DALRAIAKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSKVVIDESVIN 394


>gi|254451899|ref|ZP_05065336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 238]
 gi|198266305|gb|EDY90575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Octadecabacter antarcticus 238]
          Length = 378

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/413 (25%), Positives = 166/413 (40%), Gaps = 79/413 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD Y+IGQ+ AKR +++A+ N ++R         EL   NI+L+GPTG GKT
Sbjct: 21  TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLNHADKSDIELAKSNIMLIGPTGCGKT 80

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 81  LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 135

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 136 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 161

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   +     +   +   Q+                  V   +I  V      
Sbjct: 162 QQALLKIMEGTIASVPPQGGRKHPQQEFL---------------QVDTTNILFVCGGAFA 206

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R  G G+G   E    D   + E           + +    +  G     
Sbjct: 207 GLDKI--IAQRGKGAGMGFGAEVRGPDERGVGE--------IFSDLEPEDLLKFG----- 251

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L+ L++     IL+  ++ L+ QY+ L + E   L FT+D++
Sbjct: 252 ----LIPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDAL 307

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 308 VAIAKRAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 355


>gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
 gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
          Length = 426

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKN-------ESKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 355 DALRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSKVVIDESVIN 406


>gi|325124453|gb|ADY83976.1| ATP-dependent protease ATP-binding subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 437

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 227 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   +  R    GIG + +   +D    +       +     TD + F     
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF----- 296

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F 
Sbjct: 297 -------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFE 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + ++ A+A  A+  N+     GAR L+++ME VL +  +      +  TV+I+   + 
Sbjct: 350 DSALRAVAKKALERNT-----GARGLRSIMENVLLETMYDLPSRTDVGTVIINEAVIN 402


>gi|320102131|ref|YP_004177722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
 gi|319749413|gb|ADV61173.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
          Length = 478

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 168/421 (39%), Gaps = 80/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGK 66
           PREI ++LD+Y+IGQ  AK+ +++A+ N ++R     +     EL   NILL+GPTG GK
Sbjct: 89  PREIKAQLDQYVIGQDRAKKVLSVAVHNHYKRLVHDEEPETDVELDKSNILLIGPTGSGK 148

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  V    
Sbjct: 149 TLLARTLARVLNVPFAIGDATTLTEAGYVGEDVENILLKLLHAANFDLEAAQRGIV---- 204

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++  TS ++S      G  
Sbjct: 205 ----------------------------------YIDEID-KIGKTSHNVSITRDVSGEG 229

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                + I MDT    +I  +     
Sbjct: 230 VQQALLKMLEGTVANVPPQGGRKHP------------EQQYIQMDT---TNILFICGGTF 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           V LD    I  R     IG        D       + +      + +D +L         
Sbjct: 275 VGLDNI--IARRIGRKTIGFGGAMGDSDSAREKNLADL---LNQVTSDDVLEF------- 322

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+      ILT+  + L+ QY+ L + EG  L F  ++
Sbjct: 323 ----GLIPEFIGRLPVICPLMPLDVEALVQILTEPRNALVKQYQRLFEMEGAKLQFDSEA 378

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT---VVIDAEYVRLHI 423
           +  +A +A        D GAR L++++E  + DI F   +  +KT    ++    VR  +
Sbjct: 379 LREIAILAKER-----DTGARGLRSIIEDTMLDIMFELPERPDKTEKIFLVTPAVVRREV 433

Query: 424 G 424
            
Sbjct: 434 S 434


>gi|149201012|ref|ZP_01877987.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
 gi|149145345|gb|EDM33371.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035]
          Length = 422

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 158/400 (39%), Gaps = 78/400 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PR+I   LD Y+IGQ  AK+ +++A+ N ++R         EL   NILL+GPTG GKT 
Sbjct: 66  PRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKTL 125

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V      
Sbjct: 126 LAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV------ 179

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                                              E+D ++   S + S      G  V 
Sbjct: 180 --------------------------------YIDEVD-KITRKSENPSITRDVSGEGVQ 206

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  +   V     +   +   Q+                  V   +I  +       
Sbjct: 207 QALLKLMEGTVAAVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFAG 251

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           LD+   I  R  G+ +G   +    D   +          G I TD              
Sbjct: 252 LDKI--IAQRGKGSAMGFGADVRDNDARGV----------GEIFTDL-------EPEDLL 292

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + EG  L FTED++ 
Sbjct: 293 KFGLIPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFELEGAQLSFTEDALK 352

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           A+A  A+   +     GAR L++++E +L D  F    + 
Sbjct: 353 AVAKRAIARKT-----GARGLRSILEDILLDTMFELPSMS 387


>gi|254507763|ref|ZP_05119894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
 gi|219549288|gb|EED26282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 16]
          Length = 427

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 162/415 (39%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG GK
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG   E   +D                  T   LF       +
Sbjct: 263 ----------RVATGTGIGFGAEVRSKDETK---------------TVGELFTQVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E VL +  +    +     VVID   + 
Sbjct: 357 LRAIAKKAMERKT-----GARGLRSILEAVLLETMYELPSMDNVSKVVIDESVIN 406


>gi|293610273|ref|ZP_06692574.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827505|gb|EFF85869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 439

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++  +       E+   NILL+GPTG
Sbjct: 64  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 124 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 183

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 184 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 229 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 249

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   +  R    GIG + +   +D    +       +     TD + F     
Sbjct: 250 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF----- 298

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F 
Sbjct: 299 -------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFE 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + ++ A+A  A+  N+     GAR L+++ME VL +  +      +  TV+I+   + 
Sbjct: 352 DSALRAVAKKALERNT-----GARGLRSIMENVLLETMYDLPSRTDVGTVIINEAVIN 404


>gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina
           loihiensis L2TR]
 gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis
           L2TR]
          Length = 423

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 161/412 (39%), Gaps = 78/412 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+ I   LD Y+IGQ  AK+ +++A+ N ++R +  A    EL   NILL+GPTG GKT 
Sbjct: 67  PKAIRKHLDDYVIGQDRAKKVLSVAVYNHYKRLRGSAKQEVELGKSNILLIGPTGSGKTF 126

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V      
Sbjct: 127 LAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAERGIVY----- 181

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              + I          S TR+V  + ++   +  K I+  VA                  
Sbjct: 182 --IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------- 224

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                +   +        KI       +  L +    RL                     
Sbjct: 225 --GGRKHPQQEFLQVDTSKILFICGGAFAGLNKVIEQRL--------------------- 261

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                      +G GIG               G+ V +K     ++    IA        
Sbjct: 262 ----------STGTGIGF--------------GAEVKSKT---QSEEGAIIAKVEPEDLV 294

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L  L++     IL + ++ L  QY  L + E + L+F ED++ 
Sbjct: 295 RYGLIPEFIGRLPVVATLDELDEEALIEILREPKNALTKQYSALFEMEDVELEFREDALR 354

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           A+A  A+   +     GAR L++++E VL    +    ++    VV+D   +
Sbjct: 355 AIAKKAMARKT-----GARGLRSIVEGVLLGTMYELPSIEGVAKVVVDESVI 401


>gi|312882506|ref|ZP_07742247.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369906|gb|EFP97417.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 427

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 166/415 (40%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG GK
Sbjct: 68  PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG   E   +D                  T   LF       +
Sbjct: 263 ----------RVATGTGIGFGAEVRSKDETK---------------TVGELFTKVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E VL +  +    +++   VVID   ++
Sbjct: 357 LRAIAKKAMDRKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDDSVIK 406


>gi|94676789|ref|YP_588714.1| ATP-dependent protease ATP-binding subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|166214757|sp|Q1LTK0|CLPX_BAUCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94219939|gb|ABF14098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 421

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/421 (23%), Positives = 173/421 (41%), Gaps = 82/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P +I + L+ Y+IGQ+ AK+ +A+A+ N ++R     +    EL   NILL+GPTG GK
Sbjct: 66  TPHDINNHLNNYVIGQEQAKKVLAVAVYNHYKRLHHDTSHNNVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE I+  L+      V++++   V    
Sbjct: 126 TLLADTLARFLHVPFTMADATTLTEAGYVGEDVENILHQLLQKCDYNVQKAQHGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPHGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                     D +  D+ +++   G 
Sbjct: 228 ---------------------RKHP-----------------QQDFLKVDTSKILFICGG 249

Query: 247 VFLDEFDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
            F D  DK++ R  D+ N IG S              + +      +N D +L       
Sbjct: 250 AF-DGLDKVIERRMDTNNSIGFS--------------AIIKLGSDQLNEDKLL--TQVEP 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F+E
Sbjct: 293 EDLVKFGLIPEFIGRLPVVATLNELSEEALIRILREPKNALTKQYQALFNLEGVELEFSE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           +++ A+A  A+   +     GAR L++++E +L +  +     L  + V+I+   +  + 
Sbjct: 353 EALIAIAKKAMARKT-----GARGLRSIVEGILLETMYELPSQLHVEKVIINEAVITSNT 407

Query: 424 G 424
            
Sbjct: 408 K 408


>gi|153824104|ref|ZP_01976771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
 gi|126518374|gb|EAZ75597.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae B33]
          Length = 215

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 112/215 (52%), Positives = 158/215 (73%)

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           E+ +L++ + +   +I  VEN GIVF+DE DKI  R   +G  VSREGVQRDLLPL+EGS
Sbjct: 1   EAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGS 60

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +
Sbjct: 61  TVSTKHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPK 120

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L  QY  LMKTE + + FTED I  +AD A  +N T  +IGARRL TV+ER++++ISF
Sbjct: 121 ASLTEQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISF 180

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            A++   +  VIDA YV+  +G+   + D+  FIL
Sbjct: 181 DATEKAGQAFVIDAAYVKARLGELVEDEDLSRFIL 215


>gi|268316268|ref|YP_003289987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus
           marinus DSM 4252]
 gi|262333802|gb|ACY47599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus
           marinus DSM 4252]
          Length = 419

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/419 (26%), Positives = 172/419 (41%), Gaps = 83/419 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62
            +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R      L D    EL   NILL+GPT
Sbjct: 65  LTPPEIKAALDEYVIGQERAKKTLAVAVYNHYKRIDHQHYLSDYDDVELEKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +  V
Sbjct: 125 GTGKTLLARTLARILDVPFSISDATALTEAGYVGEDVESILAHLLHAADFNVERAEQGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I        + S TR+V  + ++   +   E  I               
Sbjct: 185 Y-------IDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTIAGVPPKGG------- 230

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                 +     LI++DT    +I  + 
Sbjct: 231 -------------------------------------RKHPEQNLINIDT---RNILFIC 250

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 L+E   I  R S + IG    G +R                 ++          
Sbjct: 251 GGAFEGLEEI--IARRLSTSSIGFFASGGKR-----------------VDPKDPRIFYYV 291

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L++L+    R ILT+ ++ L+ QY++L   +GI L F
Sbjct: 292 EPDDLLKFGLIPEFIGRLPVITPLEALSDEALRSILTEPKNALVRQYQKLFAMDGIELIF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
            E+++DA+ + A  L +     GAR L+ VME V+ DI F+   + +  V  I A  VR
Sbjct: 352 EEEALDAIVERARELGT-----GARGLRAVMEEVMLDIMFNIHTMPDVGVCRITAATVR 405


>gi|261253458|ref|ZP_05946031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
 gi|260936849|gb|EEX92838.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           orientalis CIP 102891]
          Length = 427

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 165/415 (39%), Gaps = 79/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           PR+I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG GK
Sbjct: 68  PRDIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+                 
Sbjct: 228 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ---------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G GIG + E   +D                  T   LF       +
Sbjct: 263 ----------RVATGTGIGFAAEVRSKDETK---------------TVGELFTQVEPEDL 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F ED+
Sbjct: 298 VK-YGLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDAELEFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E VL +  +    + +   VVID   ++
Sbjct: 357 LRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVIDESVIK 406


>gi|237653229|ref|YP_002889543.1| ATP-dependent protease ATP-binding subunit ClpX [Thauera sp. MZ1T]
 gi|237624476|gb|ACR01166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thauera sp.
           MZ1T]
          Length = 422

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 182/418 (43%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI S LD+Y+IGQ  AKR++A+A+ N ++R +     +D  EL   NILL+GPTG G
Sbjct: 66  TPHEICSILDQYVIGQSLAKRSLAVAVYNHYKRLRHLDARQDDVELAKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF+  + T  TE GYVG +VE I++ L+      V ++++  +   
Sbjct: 126 KTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIVQKLLQKCDYDVDKAQQGIIY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 184 -----IDEIDKISRKADNPSITRDVSGEGVQQALL--KLVEGTVASIPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D +  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFIQVDTTNVLFICG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K++  R    GIG   E      +   EG +++  +  +  + ++       
Sbjct: 250 GAF-DGLEKVIRNRTEKVGIGFGAE------VKSKEGKNLTDTFRQVEPEDLIKF----- 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L+ L+++    IL + ++ L+ QY++L   EG+ L+   
Sbjct: 298 ------GLIPELIGRLPVVATLQELDEAALIQILIEPKNALVKQYQKLFSMEGVELEIRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
           +++ A+A  A+   +     GAR L++++E  L DI +    L     VV+D   +  
Sbjct: 352 NALHAVARKAIKRKT-----GARGLRSILEVALLDIMYDLPTLDNVAKVVVDESTIED 404


>gi|167855228|ref|ZP_02477998.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219872048|ref|YP_002476423.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus
           parasuis SH0165]
 gi|167853681|gb|EDS24925.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           29755]
 gi|219692252|gb|ACL33475.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis
           SH0165]
          Length = 416

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 174/422 (41%), Gaps = 87/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 67  TPHEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPT 126

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R   
Sbjct: 127 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDKDQAER--- 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                I   + I          S TR+V  + ++   +   E  I         +N +  
Sbjct: 184 ----GIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTI---------ANINPQ 230

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                        +   Q+  P          +D   +       + 
Sbjct: 231 GG-----------------------RKHPKQETIP----------VDTSKI-------LF 250

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSRE-GVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             G  F    DKI     ++  GIG   E    +D   L E                LF 
Sbjct: 251 ICGGAFAG-LDKIVEARTNTQGGIGFKAELKKDKDRQALTE----------------LFK 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                 + +   L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L K EG+ 
Sbjct: 294 QVEPEDLVK-FGLIPELIGRLPVITPLEELDEKALINILTEPKNAIIKQYQALFKMEGVE 352

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L FT+D++ A+A  A++  +     GAR L++++E +L D  +    L+   V +    V
Sbjct: 353 LKFTKDALVAIAQKAISRKT-----GARGLRSIVENLLLDTMYDLPSLKASKVTVSKNCV 407

Query: 420 RL 421
             
Sbjct: 408 EK 409


>gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp.
           PRwf-1]
 gi|172048458|sp|A5WC69|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           sp. PRwf-1]
          Length = 425

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 184/429 (42%), Gaps = 92/429 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI   LD Y+IGQ+ AK+A+++A+ N ++R ++ A L +              EL  
Sbjct: 67  TPKEIREHLDGYVIGQETAKKALSVAVYNHYKRLKVAAKLAEDKKQAKLGADDAMVELSK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A   
Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAADYD 186

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V               AE+ I+                            EID +++   
Sbjct: 187 V-------------EKAEQGII-------------------------YVDEID-KISKKG 207

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            ++S      G  V    L  +   V         +   Q+            LI +DT 
Sbjct: 208 ENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQE------------LIQVDT- 254

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I ++       LD+   I  R    GIG + E   +D     +G  +S  +  +  
Sbjct: 255 --SNILIIVGGAFSGLDKV--IQQRTEKTGIGFNAEVKSKD-----DGKQLSELFKQVEP 305

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           + ++              L+PE+ GR PV   L+ L++     ILT+ ++ ++ QY+ L 
Sbjct: 306 EDLIKF-----------GLIPELIGRLPVIATLEELDEEALMQILTEPKNAIVKQYQYLF 354

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + E   L FTE  + A+A  A+   +     GAR L++++E  L D  +    + + K V
Sbjct: 355 EMEDAELSFTEAGLKAIAHKAMERKT-----GARGLRSIVENALLDTMYELPSMSDAKQV 409

Query: 413 VIDAEYVRL 421
           V+D + +  
Sbjct: 410 VVDEDVINE 418


>gi|288553619|ref|YP_003425554.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           pseudofirmus OF4]
 gi|288544779|gb|ADC48662.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           pseudofirmus OF4]
          Length = 424

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 175/427 (40%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ  AK+++++A+ N ++R        + EL   NI ++GPTG GK
Sbjct: 63  KPQEIRQILDDYVIGQDQAKKSLSVAVYNHYKRINSMNRSEEVELAKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L         +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTTASVPPQGGRKHP-----------------HQEFIQIDTTNVLFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   E  Q +L P    S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGKKVIGFGSEVKQEELKPGEYLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+      ILT  ++ L+ QY++L++ + + L+FT++
Sbjct: 293 -----GLIPEFIGRLPVISSLEPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E ++ D+ F      +  T VI  + +  +  
Sbjct: 348 ALVEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRSDVVTCVIHDKCITENAL 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PILKTED 409


>gi|282878162|ref|ZP_06286959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
 gi|281299740|gb|EFA92112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           buccalis ATCC 35310]
          Length = 415

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 176/425 (41%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI + LD YIIGQ DAKR +++A+ N ++R Q P +    E+   NI++VG
Sbjct: 61  KLKKVPKPQEIKAYLDEYIIGQDDAKRYLSVAVYNHYKRLQQPKNDDGVEIEKSNIIMVG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 121 STGTGKTLLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYDVPAAERG 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 181 IV-----------FID-----------------------------EIDKIARKSDNPSIT 200

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D  H D+  +
Sbjct: 201 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYTHVDTKNI 244

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G                S  + +    N +    + 
Sbjct: 245 LFICGGAFDGIERKIAQRLNTHVVGY--------------NSVQNVR----NINKGDLMQ 286

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + +++++ QY +L + +GI L
Sbjct: 287 YILPQDLKSFGLIPEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFEMDGIKL 346

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F ED++D + D AV        +GAR L++++E V+ D  F       K+  +  +Y +
Sbjct: 347 TFNEDALDYIVDKAVEYK-----LGARGLRSIVESVMMDAMFEIPSKHVKSFKVTLKYTQ 401

Query: 421 LHIGD 425
             +  
Sbjct: 402 EQLDK 406


>gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
 gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter
           sp. GAI101]
          Length = 421

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 167/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKDICDVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR  G+ +G   +   +D   +          G I TD            
Sbjct: 251 AGLDRI--IAARGKGSAMGFGADVRDKDARGI----------GEIFTDL-------EPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+D+
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDTQLTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           + A+A  A+   +     GAR L++++E +L D  F    +   T VV++ E V
Sbjct: 352 LAAIAKRAIERKT-----GARGLRSILEDILLDTMFELPGMDTVTEVVVNEEAV 400


>gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp.
           MWYL1]
 gi|226706592|sp|A6VW21|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MWYL1]
          Length = 426

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 174/432 (40%), Gaps = 82/432 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
           +P ++ + LD Y+IGQ  AKR +A+A+ N ++R +     D   EL   NILL+GPTG G
Sbjct: 70  TPAKLSAALDDYVIGQDKAKRVLAVAVYNHYKRLRHQGKTDTSIELGKSNILLIGPTGSG 129

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQRGIVY-- 187

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 188 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 232

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 233 ----------------------RKHPQQEFL---------------QVDTSNILFICGGA 255

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L+    I  R   + IG S       +    EG S S     + T+ ++        
Sbjct: 256 FAGLERV--ISDRTEKSSIGFSA-----TVKSKEEGRSFSEAVHRVETEDLVKF------ 302

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL+  ++ L+ QY+ L + EG+ L+FT +
Sbjct: 303 -----GLIPEFVGRLPVVATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPE 357

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           S+   A +A+   +     GAR L++++E  L D  +      +   VV+DA  +R    
Sbjct: 358 SLREAAKLALERKT-----GARGLRSILESALLDCMYELPTRNDVVKVVMDATSIRGETA 412

Query: 425 DFP--SETDMYH 434
                 + ++  
Sbjct: 413 PLMVLEKEELAK 424


>gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           sp. 4-46]
 gi|238688059|sp|B0UD19|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium sp. 4-46]
          Length = 423

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 166/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I AR  G  IG               G++V       +        +     
Sbjct: 251 AGLERI--ISARGKGTSIGF--------------GATVQAPD---DRRTGEIFRAVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E + L F E++
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L++++E +L +  +    L   + VVI  E V   
Sbjct: 352 LTLVARKAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVVEGK 403


>gi|78485522|ref|YP_391447.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363808|gb|ABB41773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thiomicrospira
           crunogena XCL-2]
          Length = 416

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 186/421 (44%), Gaps = 78/421 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L    +P EI   L+ Y+IGQ  AK+ +++A+ N +RR +      + EL   NILL+G
Sbjct: 54  ELDHLPTPHEISQILNDYVIGQYQAKKVLSVAVYNHYRRLESGHQKDEVELNKSNILLIG 113

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+    N   ++ R 
Sbjct: 114 PTGSGKTLLAQTLARLLDVPFAIADATTLTEAGYVGEDVESIVLKLLQRCDNDAEKAERG 173

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +  K I+  VA+         
Sbjct: 174 IIY-------IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVANIPPQ----- 219

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                        +  ++ M      KI   V   +  L     D++I+           
Sbjct: 220 ----------GGRKHPNQDMIQVDTSKILFIVGGAFEGL-----DKIIEQ---------- 254

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                             +   GIG S E   +D     + ++VS K+ +I  + ++   
Sbjct: 255 ----------------RTEKNIGIGFSAEVKSQD-----KKATVSEKFQNIEPEDLVKF- 292

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR P+   L+ L++     ILT+ ++ L+ QY+++ + EG+ L
Sbjct: 293 ----------GLIPEFVGRLPILAALEELDEKALIQILTEPKNALVKQYQKMFELEGVEL 342

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            F +D++  +A++A+   +     GAR L++++E+ L D  +    ++  + VVI+   +
Sbjct: 343 QFRKDALSEIANLAIERKT-----GARGLRSILEKTLLDTMYDLPSMKNVEKVVINKAVI 397

Query: 420 R 420
           +
Sbjct: 398 K 398


>gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           populi BJ001]
 gi|238692872|sp|B1Z9C8|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium populi BJ001]
          Length = 423

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 163/421 (38%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I  R  G  IG               G+SV       +        S     
Sbjct: 251 AGLERI--ISQRGKGTSIGF--------------GASVQAPD---DRRTGEVFRSVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F +++
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +  +A  A+   +     GAR L++++E +L D  +    L   + VVI  E V      
Sbjct: 352 LGLVARKAIERKT-----GARGLRSILETILLDTMYDLPGLDSVEQVVIGPEVVDGKSKP 406

Query: 426 F 426
            
Sbjct: 407 L 407


>gi|241663133|ref|YP_002981493.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|309781949|ref|ZP_07676680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
 gi|240865160|gb|ACS62821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12D]
 gi|308919293|gb|EFP64959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp.
           5_7_47FAA]
          Length = 424

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 178/417 (42%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R    GIG   E      +   E   VS     +  + ++        
Sbjct: 253 AF-DGLEKIIMQRSDKTGIGFGAE------VQSKEERDVSEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ++ A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +  
Sbjct: 355 ALTAIARKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTISD 406


>gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
 gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116]
 gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
          Length = 426

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G              E  +V   +  +  + ++       
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGAEVRSKN-------ETKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F E
Sbjct: 299 ----KYGLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFRE 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 355 DALRAIAKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSKVVIDESVIN 406


>gi|163743917|ref|ZP_02151287.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161382762|gb|EDQ07161.1| ATP-dependent protease ATP-binding subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 408

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 166/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+  K   + S  G G                + V   +  +  + +L        
Sbjct: 251 FAGLDKIIKQRGKGSAMGFGADVRDD--------SDAGVGETFKDLEPEDLLKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFTE+
Sbjct: 297 -----GLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ++ ++A  A+   +     GAR L++++E +L D  F    +   + VV++ E V  
Sbjct: 352 ALSSIAKKAIERKT-----GARGLRSILEDILLDTMFELPGMDSVEKVVVNEEAVNS 403


>gi|194017051|ref|ZP_03055663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           pumilus ATCC 7061]
 gi|194010919|gb|EDW20489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           pumilus ATCC 7061]
          Length = 421

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ++AK+++A+A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   E    DL   V  S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY ++++ + + L+F ED
Sbjct: 293 -----GLIPEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEED 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATV 397


>gi|159043936|ref|YP_001532730.1| ATP-dependent protease ATP-binding subunit ClpX [Dinoroseobacter
           shibae DFL 12]
 gi|189044133|sp|A8LJA7|CLPX_DINSH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157911696|gb|ABV93129.1| ATP-dependent Clp protease [Dinoroseobacter shibae DFL 12]
          Length = 419

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/400 (25%), Positives = 161/400 (40%), Gaps = 78/400 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 64  TPQEICDVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAGKTDIELAKSNILLIGPTGCGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V     
Sbjct: 124 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV----- 178

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               E+D ++   S + S      G  V
Sbjct: 179 ---------------------------------YIDEVD-KITRKSDNPSITRDVSGEGV 204

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   V     +   +   Q+                  V   +I  +      
Sbjct: 205 QQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAFA 249

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R  G+ IG   +  + D         V   +G +  + +L          
Sbjct: 250 GLEKI--IAQRGKGSAIGFGADVKEND------TRGVGEMFGELEPEDLLKF-------- 293

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L FTED++
Sbjct: 294 ---GLIPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDAL 350

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           +A+A  A+   +     GAR L++++E +L +  F    L
Sbjct: 351 NAIAGRAIERKT-----GARGLRSILEDILLNTMFDLPGL 385


>gi|329850565|ref|ZP_08265410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           biprosthecum C19]
 gi|328840880|gb|EGF90451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           biprosthecum C19]
          Length = 387

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 170/427 (39%), Gaps = 90/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 32  TPKEIREVLDDYVIGQSQAKKVLSVAVHNHYKRLNHAQKGNDVELAKSNIMLIGPTGSGK 91

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 92  TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 147

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 148 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 172

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 173 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 217

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R  G+ IG               G+SV         D            
Sbjct: 218 AGLEKI--ISGRGKGSSIGF--------------GASVK--------DPEDRRTGEVLRD 253

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR PV   L+ L++     ILT+ ++ LI QY+ L + E + L+
Sbjct: 254 VEPDDLMKFGLIPEFIGRLPVLATLEDLDEVTLVKILTEPKNALIKQYQRLFEMENVSLN 313

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FT +++ ++A  A+   +     GAR L++++E +L D  +    +Q  + VVI+ E V 
Sbjct: 314 FTPEALMSVARKAIVRKT-----GARGLRSILEAILLDTMYELPTMQGVEEVVINGEVVE 368

Query: 421 LHIGDFP 427
                  
Sbjct: 369 ERAQPLL 375


>gi|268592035|ref|ZP_06126256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
 gi|291312427|gb|EFE52880.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia
           rettgeri DSM 1131]
          Length = 425

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 161/423 (38%), Gaps = 79/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  +A               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L +    RL                  
Sbjct: 227 -----GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRL------------------ 263

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                        ++ +GIG + E                 K  S        +      
Sbjct: 264 -------------NTRSGIGFAAE----------------VKGESDKATEGELLTQAEPE 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY+ L   E   L+F E+
Sbjct: 295 DLIKFGLIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLENTELEFREE 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E  L +  +    + + + VV+D   +     
Sbjct: 355 ALKAIAKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEKVVVDENVINEQSE 409

Query: 425 DFP 427
              
Sbjct: 410 PLL 412


>gi|225019944|ref|ZP_03709136.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum
           DSM 5476]
 gi|224947308|gb|EEG28517.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum
           DSM 5476]
          Length = 425

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 167/414 (40%), Gaps = 78/414 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ  AK A+++A+ N ++R         EL   N+LL+GPTGVGK
Sbjct: 75  LKPVEIKKVLDEYVIGQDAAKVALSVAVYNHYKRIFAAQQEGVELQKSNVLLLGPTGVGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V            
Sbjct: 135 TLLAQTLAKILEVPFAIADATTLTEAGYVGEDVENVLLRLIQAADYDV------------ 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S ++S      G  
Sbjct: 183 -EAAERGII-------------------------YIDEID-KITRKSENVSITRDVSGEG 215

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                   + D +  D+  ++   G 
Sbjct: 216 VQQALLKILEGTVSNVPPQGGRKHP-----------------NQDFIQIDTKNILFICGG 258

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F +  +K++ R                 L   + ++++     I             H 
Sbjct: 259 AF-EGIEKVINRRMDTSAMGFG-----APLKEKKDTTLAQAIKHIE-----------PHD 301

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PEI GR PV   L  L++     IL + ++ L+ QY+ L + +G  L+FT+D+
Sbjct: 302 LVRFGMIPEIVGRIPVITALDDLDEDSLVKILREPKNALLKQYQYLFELDGTTLEFTDDA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           + A+A +A+   +     GAR L+ ++E VL D+ F     +   VVI  E V 
Sbjct: 362 LRAVAQMAIARKT-----GARGLRGILEGVLNDLMFRLPSEKATRVVITKEAVE 410


>gi|262380155|ref|ZP_06073310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SH164]
 gi|262298349|gb|EEY86263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           radioresistens SH164]
          Length = 438

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 170/420 (40%), Gaps = 83/420 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +        + + E+   NILL+GPT
Sbjct: 62  KPHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGHKTEDKVEIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   + ++++  +
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDIEKAQKGII 181

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  VA            
Sbjct: 182 Y-------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG----- 227

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+                  V   ++  + 
Sbjct: 228 -------------------------RKHPQQEFI---------------QVDTSNVLFIC 247

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 L++   +  R    GIG + E   +D    +                 LF    
Sbjct: 248 GGAFSGLEKI--VQHRQEKGGIGFTAEVKSKDETKKLAE---------------LFRQVE 290

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
              + +   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F
Sbjct: 291 PADLVK-FGLIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVF 349

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            + ++  +A  A+  N+     GAR L++++E VL +  +      +  TVVI+   +  
Sbjct: 350 EDSALRTVAKKALERNT-----GARGLRSILENVLLETMYDLPSRNDVGTVVINEAVIND 404


>gi|297792267|ref|XP_002864018.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309853|gb|EFH40277.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 605

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 173/436 (39%), Gaps = 95/436 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDE----- 50
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +            D+ DE     
Sbjct: 198 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGFVSRSDNLDMEDENIDHV 257

Query: 51  -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            L   N+LL+GPTG GKT +++ LAR+   PF   + T  T+ GYVG +VE I+  L   
Sbjct: 258 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 317

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V E++R  V                                         E+D   
Sbjct: 318 AGCNVEEAQRGIV--------------------------------------YIDEVD--- 336

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 + +    GG  V    + +   K++           V      L RD     I 
Sbjct: 337 ---KMTMKSHSSNGGRDVSGEGVQQSLLKLLEG-------TVVPIPEKGLRRDPRGDSIQ 386

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MDT       ++   G  F+D    +  R     IG                ++V     
Sbjct: 387 MDT-----KDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGFSSAAV----- 436

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L        V+    L+PE  GR P+ V L +LN+     +LT+ +S L  QY
Sbjct: 437 ---TSSLLESLQSEDLVA--YGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQY 491

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-- 407
           K+L +   + L FTE +   +A  A++ N+     GAR L++++E +L +  F   D   
Sbjct: 492 KKLFRMNNVQLHFTEGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSVT 546

Query: 408 ----QEKTVVIDAEYV 419
                 K V++D E V
Sbjct: 547 EGSQSIKAVLVDEEAV 562


>gi|221505697|gb|EEE31342.1| hsl and Clp protease, putative [Toxoplasma gondii VEG]
          Length = 366

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 149/430 (34%), Positives = 232/430 (53%), Gaps = 68/430 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70
           +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+     G T + 
Sbjct: 1   MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLI-----GPTGVG 55

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           +                           V + +   +D     V  ++  EV        
Sbjct: 56  KT-------------------------EVARRLAKRLDAPFIKVEATKFTEVGFHGRDV- 89

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I+  L                          +++ V    + +     P        
Sbjct: 90  -DQIIKDL--------------------------VEVAVKTQRTKLQEVMRPAAEHRAER 122

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            + E           +   ++V++   +LM+ E D +I  D V + +++ VE  GIVF+D
Sbjct: 123 KILEALLG------SEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFID 176

Query: 251 EFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           E DKI ++   NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  R
Sbjct: 177 EIDKICSKGGRNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVR 236

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
           P+DLL E+QGR P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++
Sbjct: 237 PSDLLAELQGRLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVN 296

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDFP 427
            +A VA  +N++V +IGARRL T++E+++EDI+F+A  +     V +D E VR  +    
Sbjct: 297 EIARVACEVNASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLL 356

Query: 428 SETDMYHFIL 437
           ++TD   F+L
Sbjct: 357 TKTDYTRFVL 366


>gi|162148814|ref|YP_001603275.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545438|ref|YP_002277667.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189044136|sp|A9HRV3|CLPX_GLUDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161787391|emb|CAP56986.1| ATP-dependent Clp protease ATP-binding subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533115|gb|ACI53052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 419

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 164/426 (38%), Gaps = 90/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NILLVGPTG GK
Sbjct: 64  TPKEICKVLDDYVIGQFYAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNILLVGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   ++  +     
Sbjct: 205 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+GIG   +    D                                
Sbjct: 250 AGLDKI--ISARGKGSGIGFGADVQSPDERR----------------------TGAILRD 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + EG+ L 
Sbjct: 286 VEPEDLLKFGLIPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEGVKLT 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FT+D++  +A  A+   +     GAR L+ +ME +L    F    L+    VVI+ +   
Sbjct: 346 FTDDALKQVALRAIARRT-----GARGLRAIMESILLSTMFDLPGLENVDEVVINKDVAE 400

Query: 421 LHIGDF 426
                 
Sbjct: 401 SKTSPV 406


>gi|269102130|ref|ZP_06154827.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162028|gb|EEZ40524.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 392

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ+ AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 33  TPQEIRHNLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTNSDGVELGKSNILLIGPTGSG 92

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 93  KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 150

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 151 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 195

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 196 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 218

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA ++G G G                           T   LF+     
Sbjct: 219 FAGLDKVIEQRVATNTGIGFGAEVRSKDES-----------------RTLTDLFLQVEPE 261

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L + EG  L+F +
Sbjct: 262 DLVK-FGLIPEFIGRLPVTATLTELDEDALVQILREPKNALTKQYGALFELEGAELEFRD 320

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL D  +     +    VVID   ++
Sbjct: 321 DALVAIARKAMERKT-----GARGLRSIVEAVLLDTMYELPSTKGVSKVVIDESVIK 372


>gi|254520130|ref|ZP_05132186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           sp. 7_2_43FAA]
 gi|226913879|gb|EEH99080.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           sp. 7_2_43FAA]
          Length = 431

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 178/418 (42%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+ AK+++++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 62  KPNEIKNYLDQYVIGQEKAKKSLSVAVYNHYKRINSNLIDDDIELQKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 122 TLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQSADYDI------------ 169

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A  S + S      G  
Sbjct: 170 -ERAEKGII-------------------------YIDEID-KIARKSENPSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L         +   +   Q+                  ++  +I  +     
Sbjct: 203 VQQALLKILEGTTASVPPQGGRKHPHQEFL---------------QINTSNILFICGGAF 247

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              D  DKI+  R   + IG               G+++++++     D    +      
Sbjct: 248 ---DGVDKIIEKRTEKSSIGF--------------GANITSRHTK---DVGKLLKDIMPS 287

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V L+SL+      ILT  ++ L+ QY++L + + + LDFT+D
Sbjct: 288 DLLKFGLIPEFVGRLPVVVTLESLDNDALVNILTQPKNALVKQYRKLFEIDNVELDFTDD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ A+A+ A+   +     GAR L++++E ++ ++ F    D     V+I+ + ++  
Sbjct: 348 ALKAIANEAIERKT-----GARGLRSIVEEMMTEVMFDIPSDETISKVIINEDCIKEK 400


>gi|326795824|ref|YP_004313644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
 gi|326546588|gb|ADZ91808.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas
           mediterranea MMB-1]
          Length = 427

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 173/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
           +P ++   LD Y+IGQ+ AK+ +A+A+ N ++R +  +  D   EL   NILL+GPTG G
Sbjct: 70  TPLKLSKSLDDYVIGQERAKKVLAVAVYNHYKRLRHQSSKDSPVELGKSNILLIGPTGSG 129

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V   
Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQRGIVY-- 187

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 188 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 232

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V   +I  +    
Sbjct: 233 ----------------------RKHPQQEFL---------------QVDTSNILFICGGA 255

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              L+    I  R   + IG S     +D     EG + S     + T+ ++        
Sbjct: 256 FAGLERV--ISDRTEKSSIGFSATVKSKD-----EGRTFSEAIHQVETEDLVKF------ 302

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL++ ++ L  QY+ L   EG+ L+FT++
Sbjct: 303 -----GLIPEFVGRLPVVATLSELDEEALMTILSEPKNALTKQYQHLFDLEGVELEFTDE 357

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           S+   A +A+   +     GAR L++++E  L D  +   +  +   +V+D   VR
Sbjct: 358 SLREAAHLALERKT-----GARGLRSILESALLDCMYELPNRSDVVKIVMDGASVR 408


>gi|114563761|ref|YP_751274.1| ATP-dependent protease ATP-binding subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|122299289|sp|Q07ZX9|CLPX_SHEFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114335054|gb|ABI72436.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           frigidimarina NCIMB 400]
          Length = 426

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 161/415 (38%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P E+   LD Y+IGQ  AK+ +A+A+ N ++R +  A     EL   NILL+GPTG GK
Sbjct: 67  TPHELRKHLDDYVIGQDQAKKVLAVAVYNHYKRLRNGAIKDGVELGKSNILLLGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V    
Sbjct: 127 TLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAERGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G G G   +G         E    +        +    +  G    
Sbjct: 263 ---------AHTGTGIGFGAEVKG---------EADKATISQILSQVEPGDLVKFG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    IL++ ++ L  QY  L + E + L+F +D+
Sbjct: 301 -----LIPEFIGRLPVVATLTELDEAALVQILSEPKNALTKQYSALFEMEDVELEFRDDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +     Q     V+D   V+
Sbjct: 356 LQAIAQKAMSRKT-----GARGLRSIVESILLDTMYDIPSTQGVIKAVVDESVVK 405


>gi|281425295|ref|ZP_06256208.1| hypothetical protein HMPREF0971_02267 [Prevotella oris F0302]
 gi|281400588|gb|EFB31419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris F0302]
          Length = 414

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 178/425 (41%), Gaps = 80/425 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD YIIGQ +AKR +++++ N ++R Q PAD    E+   NI++VG
Sbjct: 59  KLKKVPKPKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVG 118

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 119 STGTGKTLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERG 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 179 IV-----------FID-----------------------------EIDKIARKSDNPSIT 198

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H ++  +
Sbjct: 199 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVNTKNI 242

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F     KI  R + + +G +   VQ                     D    + 
Sbjct: 243 LFICGGAFDGIERKIAQRMNTHVVGYNS--VQNVA----------------KIDKNDLMK 284

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                  +   L+PEI GR PV  +L  L++   R IL + ++++I QY++L + +GI L
Sbjct: 285 YVQPMDLKSFGLIPEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFEMDGIKL 344

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F ED+++ + D AV        +GAR L++++E ++ D  F     + K  V+  +Y +
Sbjct: 345 SFEEDTLNFIVDKAVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYAK 399

Query: 421 LHIGD 425
             +  
Sbjct: 400 NQLNK 404


>gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit [Methylobacterium
           extorquens PA1]
 gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           chloromethanicum CM4]
 gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
 gi|238687353|sp|A9W5F6|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763853|sp|B7KNT1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium extorquens PA1]
 gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium chloromethanicum CM4]
 gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens AM1]
 gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylobacterium extorquens DM4]
          Length = 423

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 164/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I  R  G  IG               G+SV       +        S     
Sbjct: 251 AGLERI--ISQRGKGTSIGF--------------GASVQAPD---DRRTGEVFRSVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F +++
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L++++E +L D  +    L+  + VVI  E V   
Sbjct: 352 LSLVARKAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGK 403


>gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
 gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           6P18H1]
          Length = 411

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 170/423 (40%), Gaps = 78/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                         G  +  +  M        L                         G 
Sbjct: 224 --------------GGRKHPQQEMVKLDTSKIL----------------------FICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    DKI+ + +     +   G    +    +  S+S  +  +  D ++         
Sbjct: 248 AFAG-LDKIIDKRTQTSTSI---GFNAKVEKDEKQQSLSELFRQVEPDDLMKF------- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT ++
Sbjct: 297 ----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E VL D  +    L+  + V++    +  ++  
Sbjct: 353 LKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVGESTIVDNLAP 407

Query: 426 FPS 428
              
Sbjct: 408 KLE 410


>gi|157693224|ref|YP_001487686.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus pumilus
           SAFR-032]
 gi|167008658|sp|A8FFV9|CLPX_BACP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157681982|gb|ABV63126.1| ATP dependent protease ATP-binding subunit [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ++AK+++A+A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   E    DL   V  S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY ++++ + + L+F ED
Sbjct: 293 -----GLIPEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEED 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATV 397


>gi|307822659|ref|ZP_07652890.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
 gi|307736263|gb|EFO07109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
          Length = 424

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 170/414 (41%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P+EI  ELD Y+IGQ++AK+ +A+A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  KPKEIKEELDSYVIGQENAKKILAVAVYNHYKRLRSKSKKDTVELAKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ ++      V ++    V    
Sbjct: 127 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKILQKCDYDVEKAESGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V+  +I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVNTANILFIVGGAF 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R    GIG S E   +D    +                 LF    A  +
Sbjct: 253 AGLDRV--IKDRSEKGGIGFSAEIKTKDESKNI---------------GQLFAEVEAEDL 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L+ L++     ILT+ ++ LI QYK L + EG  L+F +DS
Sbjct: 296 IK-YGLIPEFVGRLPVIATLEELDEKALVQILTEPKNALIKQYKHLFEMEGAELEFRDDS 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
           + A+A  A+   +     GAR L+T++E VL +  +          VV+D   +
Sbjct: 355 LTAIARKAMERKT-----GARGLRTIVENVLLNTMYELPSADNICKVVVDGSVI 403


>gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
 gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
          Length = 391

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 32  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 91

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 92  KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 149

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 150 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 194

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 195 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 217

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 218 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 260

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 261 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 319

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 320 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 371


>gi|237755490|ref|ZP_04584112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692354|gb|EEP61340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 408

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/426 (25%), Positives = 184/426 (43%), Gaps = 87/426 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLV 59
           L+   +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R        D   E+   NILL+
Sbjct: 53  LSELPTPAEIKAKLDEYVIGQERAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLI 112

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V     
Sbjct: 113 GPTGSGKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNADYDV----- 167

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE+ I+                            E+D ++A  S D  + 
Sbjct: 168 --------EAAEKGIV-------------------------YIDEVD-KIAKKSGDNPSI 193

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                       L ++    + +   +  R    + +                +   +I 
Sbjct: 194 TRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI--------------QIDTTNIL 239

Query: 240 MVENYGIVFLDEFDK--IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
            +     V L++  K  I  +  G G  +  +  ++DLL LV+   +  K+G        
Sbjct: 240 FILGGAFVGLEDIIKQRIGKKSIGFGADIKSKSEEKDLLSLVQPEDL-IKFG-------- 290

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         L+PE  GR PV   L+ L++     +LT+ ++ LI QYK L+  +G
Sbjct: 291 --------------LIPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDG 336

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           I L+FTED++  +A  A+   +     GAR L+ ++E ++ D+ + A + +  K V+ID 
Sbjct: 337 IELEFTEDALRKIAREAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDK 391

Query: 417 EYVRLH 422
           + V   
Sbjct: 392 DVVLKQ 397


>gi|88705173|ref|ZP_01102885.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter
           litoralis KT71]
 gi|88700868|gb|EAQ97975.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter
           litoralis KT71]
          Length = 375

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/415 (27%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P EI + LD Y+IGQQ AK+ +++A+ N ++R +      D  EL   NILLVGPTG GK
Sbjct: 16  PVEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSDDVELGKSNILLVGPTGSGK 75

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V    
Sbjct: 76  TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQVGIVY--- 132

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 133 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 177

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   SI  +     
Sbjct: 178 ---------------------RKHPQQEFL---------------QVDTSSILFICGGAF 201

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG               G+ V +K  + N   +LF        
Sbjct: 202 AGLDKV--IRDRSEKGGIGF--------------GAEVHSKDATRNVGEVLFDLE--PED 243

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+      ILT+ +++L  QY +L + E + +DF ED 
Sbjct: 244 LVQYGLIPEFVGRLPVIATLEELDVPALVQILTEPKNSLTKQYSKLFEMEDVEIDFREDG 303

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A+ A+   +     GAR L++++E VL D  +S    ++   VV+D   +R
Sbjct: 304 LRAVAEKAMERKT-----GARGLRSILEGVLLDTMYSIPSREDVAKVVVDESVIR 353


>gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           nodulans ORS 2060]
 gi|254763854|sp|B8IN27|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium nodulans ORS 2060]
          Length = 423

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I AR  G  IG               G++V       +        +     
Sbjct: 251 AGLERI--ISARGKGTSIGF--------------GATVQAPD---DRRTGEIFRNVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++   + IL + ++ L+ QY+ L + E + L F E++
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L++++E +L +  +    L   + VVI  E V   
Sbjct: 352 LTLVARKAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVVDGK 403


>gi|315127188|ref|YP_004069191.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
 gi|315015702|gb|ADT69040.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp.
           SM9913]
          Length = 427

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/414 (24%), Positives = 171/414 (41%), Gaps = 78/414 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRNHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDVELGKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY---- 185

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 186 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------ 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +        KI       +  L                            
Sbjct: 229 ---GGRKHPQQEFLQVDTSKILFICGGAFAGL---------------------------- 257

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                DK++ + S    G+   G   D+       S+S  +  +  + ++          
Sbjct: 258 -----DKVIEQRSHKNTGI---GFGVDVKESAASRSLSETFKDVEPEDLV---------- 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++
Sbjct: 300 -KYGLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E VL D  +    +     VV+D   ++
Sbjct: 359 RAIAHKAMERKT-----GARGLRSIVEGVLLDTMYELPSIDNVSKVVVDETVIK 407


>gi|299141493|ref|ZP_07034629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris C735]
 gi|298576829|gb|EFI48699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           oris C735]
          Length = 414

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 180/426 (42%), Gaps = 82/426 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD YIIGQ +AKR +++++ N ++R Q PAD    E+   NI++VG
Sbjct: 59  KLKKVPKPKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVG 118

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R 
Sbjct: 119 STGTGKTLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERG 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 179 IV-----------FID-----------------------------EIDKIARKSDNPSIT 198

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H ++  +
Sbjct: 199 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVNTKNI 242

Query: 241 VENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +   G  F D  + KI  R + + +G +   VQ                     D    +
Sbjct: 243 LFICGGAF-DSIERKIAQRMNTHVVGYNS--VQNVA----------------KIDKNDLM 283

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                   +   L+PEI GR PV  +L  L++   R IL + ++++I QY++L + +GI 
Sbjct: 284 KYVQPMDLKSFGLIPEIIGRLPVLTYLNPLDREALRCILVEPKNSIIKQYEKLFEMDGIK 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F ED+++ + D AV        +GAR L++++E ++ D  F     + K  V+  +Y 
Sbjct: 344 LSFEEDTLNFIVDKAVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYA 398

Query: 420 RLHIGD 425
           +  +  
Sbjct: 399 KNQLNK 404


>gi|258648498|ref|ZP_05735967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
 gi|260851263|gb|EEX71132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           tannerae ATCC 51259]
          Length = 415

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 183/422 (43%), Gaps = 85/422 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPTGV 64
           P+EI S LD+Y+IGQ+DAKR +++++ N ++R         D   E+   NI++VG TG 
Sbjct: 68  PQEIKSYLDQYVIGQEDAKRYLSVSVYNHYKRLAQENLDAVDDGVEIEKSNIIMVGTTGT 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+  A   V  + R  V  
Sbjct: 128 GKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQEADFNVERAERGIV-- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                                  EID ++A  S + S      G
Sbjct: 186 ------------------------------------FIDEID-KIARKSDNPSITRDVSG 208

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  L   V+    K   +                   D D VH D+  ++   
Sbjct: 209 EGVQQGMLKLLEGSVVNVPPKGGRKHP-----------------DQDYVHVDTRNILFIC 251

Query: 245 GIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  + KI  R + + +G          +  ++ +++      ++           
Sbjct: 252 GGAF-DGIEKKIAQRLNTHTVGYD----NVQRVKKIDPANLMQYIEPMD----------- 295

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
               +   L+PEI GR PV  +L  L+++  R IL + +++L+ QY++L K +G+ L F 
Sbjct: 296 ---LKSFGLIPEIIGRLPVLTYLNPLDEAALRRILVEPKNSLVRQYEKLFKMDGVTLTFA 352

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           ED++D + + A+        +GAR L+++ME ++ D  F     +E T  + A Y + H 
Sbjct: 353 EDALDFIVNKAMEYK-----LGARGLRSIMESIMMDAMFDIPSAKEDTFKVTAAYAKEHF 407

Query: 424 GD 425
             
Sbjct: 408 EK 409


>gi|300715592|ref|YP_003740395.1| ATP-dependent Clp protease ATP-binding protein ClpX [Erwinia
           billingiae Eb661]
 gi|299061428|emb|CAX58540.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           billingiae Eb661]
          Length = 424

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++    G G+              G   + K  +        +       
Sbjct: 255 ------DKVISQRVDTGTGI--------------GFGATVKGTAEKATEGQLLEQVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVDLEFREEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A++  +     GAR L++++E  L +  +    + + + VVID   +   
Sbjct: 355 LTAIAKKAMSRKT-----GARGLRSIVEGALLNTMYDLPSMDDVEKVVIDDSVIDGQ 406


>gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
 gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea
           phototrophica DFL-43]
          Length = 426

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/420 (26%), Positives = 171/420 (40%), Gaps = 90/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ  AK+ +++A+ N ++R    +   + EL   NILLVGPTG GK
Sbjct: 68  TPQEIIATLDEYVIGQHQAKKILSVAVHNHYKRLNHSSKSGEVELAKSNILLVGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 184 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+             + +DT    +I  V     
Sbjct: 209 VQQALLKIMEGTVASVPPQGGRKHPQQE------------FLQVDT---TNILFVCGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R     IG S     +D   + E                          
Sbjct: 254 AGLDKI--ISDRGEKTSIGFSASVRAQDERRVGE----------------------VLRA 289

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++S    ILT+ ++ L+ QY+ L + E + L 
Sbjct: 290 LEPEDLVKFGLIPEFIGRLPVLATLEDLDESALIQILTEPKNALVKQYQRLFEMEDVELT 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F E ++  +A   +   +     GAR L+++ME++L D  F    L+  + VVI  E V 
Sbjct: 350 FHESALQEIAKRGIIRAT-----GARGLRSIMEKILLDTMFELPALEGVREVVISDEVVN 404


>gi|15606540|ref|NP_213920.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5]
 gi|6225162|sp|O67356|CLPX_AQUAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2983756|gb|AAC07316.1| ATP-dependent protease ATPase subunit clpX [Aquifex aeolicus VF5]
          Length = 412

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/430 (24%), Positives = 173/430 (40%), Gaps = 92/430 (21%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNIL 57
           +L     P +I   LD Y+IGQ+ AK+ +++A+ N ++R +           EL   NIL
Sbjct: 55  ELKDIPKPEQIKKILDEYVIGQERAKKILSVAVYNHYKRIKAKEAGLSLDDVELEKSNIL 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++R LA++   PF   + T  TE GYVG +VE ++  L+      V+ +
Sbjct: 115 LIGPTGSGKTLLARTLAKILNVPFAIADATSLTEAGYVGEDVENVLVRLLQACDYDVKAA 174

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           ++  V                                         EID     +  + S
Sbjct: 175 QKGIV--------------------------------------YIDEIDKIAKKSGINPS 196

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 G  V    L  +   V+    +   +                     + +  D+
Sbjct: 197 ITRDVSGEGVQQALLKIVEGSVVNVPPQGGRKHP-----------------HQEFIQVDT 239

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSRE----GVQRDLLPLVEGSSVSTKYGSINT 293
             ++   G  F+   D I  R   + +G   E      ++DLL LVE   +  ++G I  
Sbjct: 240 TDILFICGGAFVGLEDIIKQRLGKSRVGFEAEIKKVDKEQDLLELVEPDDL-IRFGMI-- 296

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                               PE  GRFPV   L+ L + +   IL + ++ L+ QY++L 
Sbjct: 297 --------------------PEFIGRFPVIATLRELTEDELVRILVEPKNALVKQYQKLF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + EG+ L FTE ++  +A  A+   +     GAR L+ +ME ++ DI F    L   K V
Sbjct: 337 ELEGVKLTFTEKALREIAKEAIRRKT-----GARGLRAIMEDIMADIMFEVPSLPGVKEV 391

Query: 413 VIDAEYVRLH 422
           +ID   V+  
Sbjct: 392 IIDENVVKNK 401


>gi|294501428|ref|YP_003565128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium QM B1551]
 gi|295706776|ref|YP_003599851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           megaterium DSM 319]
 gi|294351365|gb|ADE71694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium QM B1551]
 gi|294804435|gb|ADF41501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           megaterium DSM 319]
          Length = 421

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 175/418 (41%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ+DAK+++++A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPKEIRDILDEYVIGQEDAKKSLSVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E  Q+D       + V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGKKVIGFGSETKQQDFTEKELLAKVLPE------DLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     ILT  ++ L+ QY+++++ + + L+F ++
Sbjct: 293 -----GLIPEFIGRLPVTASLVPLDEEALVEILTKPKNALVKQYQKMLELDDVELEFEDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++  ++  A+   +     GAR L++++E ++ D+ F      +    +I  E VR  
Sbjct: 348 ALVEISKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDITKCIITGETVRDQ 400


>gi|226953944|ref|ZP_03824408.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
 gi|226835298|gb|EEH67681.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           ATCC 27244]
          Length = 436

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 172/419 (41%), Gaps = 84/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +           E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  +   +I  +  
Sbjct: 227 ------------------------RKHPQQEFI---------------QIDTANILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN-TDHILFIASG 302
                L++   +  R    GIG + +   +D         VS  +  +  TD + F    
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDDSK-----KVSELFRQVEATDLVKF---- 296

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F
Sbjct: 297 --------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVF 348

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            E ++ A+A  A+  N+     GAR L++++E VL +  +      +  TV++D   + 
Sbjct: 349 EESALRAVAKKALERNT-----GARGLRSILENVLLETMYDLPSRSDVGTVIVDEAVIN 402


>gi|8978260|dbj|BAA98151.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana]
          Length = 608

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 176/436 (40%), Gaps = 93/436 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +            D+ D      
Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF   + T  T+ GYVG +VE I+  L   
Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 318

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V E++R  V                                         E+D   
Sbjct: 319 AGCNVEEAQRGIV--------------------------------------YIDEVD--- 337

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 + +    GG  V    + +   K++         +SV      L RD     I 
Sbjct: 338 ---KMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTV-----VSVPIPEKGLRRDPRGDSIQ 389

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MDT       ++   G  F+D    +  R     IG             +  ++V     
Sbjct: 390 MDT-----KDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAV----- 439

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L        V+    L+PE  GR P+ V L +LN+     +LT+ +S L  QY
Sbjct: 440 ---TSSLLESLQSEDLVA--YGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQY 494

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-- 407
           K+L +   + L FTE +   +A  A++ N+     GAR L++++E +L +  F   D   
Sbjct: 495 KKLFRMNNVQLQFTEGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSIT 549

Query: 408 ----QEKTVVIDAEYV 419
                 K V++D E V
Sbjct: 550 EGSQSIKAVLVDEEAV 565


>gi|294651551|ref|ZP_06728860.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822574|gb|EFF81468.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 436

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 172/419 (41%), Gaps = 84/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +           E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  +   +I  +  
Sbjct: 227 ------------------------RKHPQQEFI---------------QIDTANILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN-TDHILFIASG 302
                L++   +  R    GIG + +   +D         VS  +  +  TD + F    
Sbjct: 248 GAFSGLEKI--VQQRQEKGGIGFTADVKNKDDSK-----KVSELFRQVEATDLVKF---- 296

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F
Sbjct: 297 --------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVF 348

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            E ++ A+A  A+  N+     GAR L++++E VL +  +      +  TV++D   + 
Sbjct: 349 EESALRAVAKKALERNT-----GARGLRSILENVLLETMYDLPSRSDVGTVIVDEAVIN 402


>gi|153820475|ref|ZP_01973142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
 gi|126508982|gb|EAZ71576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae NCTC 8457]
          Length = 366

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 7   TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 66

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 67  KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 124

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 125 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 169

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 170 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 192

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 193 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 235

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L + E + L+F E
Sbjct: 236 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFRE 294

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +    ++E   VVID   + 
Sbjct: 295 DALKAIAAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 346


>gi|57238934|ref|YP_180070.1| ATP-dependent protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578867|ref|YP_197079.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58616925|ref|YP_196124.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|75356618|sp|Q5FFG6|CLPX_EHRRG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81353017|sp|Q5HBX4|CLPX_EHRRW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|57161013|emb|CAH57919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58416537|emb|CAI27650.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Gardel]
 gi|58417493|emb|CAI26697.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 406

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 168/420 (40%), Gaps = 82/420 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T +  P+EI   LD Y+IGQ+ +K+ +++A+ N ++R      + D E+   N+LL+GPT
Sbjct: 56  TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGIISDVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  +
Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVESILLKLLQAANFNVEAAQRGII 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + +          S TR+V  + ++   +  K I+  V+            
Sbjct: 176 Y-------IDEVDKISRKSENASITRDVSGEGVQQALL--KVIEGTVSSVPPQGG----- 221

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                 ++          ++ D+I  + 
Sbjct: 222 ---------------------------------RKHPHQEFIQ-------INTDNILFIF 241

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 L++   I +R  G+ +G                   + +  S + D        
Sbjct: 242 GGAFDGLEKI--IESRHQGSNMGFE----------------ANVQKASKDKD---IFCYT 280

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L+++    IL + +++L+ QYK+L + + I L+F
Sbjct: 281 EPEDLVKFGLIPEFVGRIPVITSLGELDEATLCRILVEPKNSLVKQYKKLFEMDNINLEF 340

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
            + ++  +A  A    +     GAR L+ ++E +L D+ F          +VI  + V  
Sbjct: 341 DDSALSEIARKAAVRKA-----GARGLRAILENLLLDLMFETPGTFNVDQIVISKQMVEE 395


>gi|188996269|ref|YP_001930520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931336|gb|ACD65966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 408

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 182/429 (42%), Gaps = 87/429 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGV 64
           +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R        D   E+   NILL+GPTG 
Sbjct: 58  TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLIGPTGS 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V          
Sbjct: 118 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNADYDV---------- 167

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE+ I+                            E+D ++A  S D  +      
Sbjct: 168 ---EAAEKGIV-------------------------YIDEVD-KIAKKSGDNPSITRDVS 198

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  L ++    + +       +  Q       ++          +   +I  +   
Sbjct: 199 GEGVQQALLKILEGTIAN-------VPPQGGRKHPHQEFIQ-------IDTTNILFILGG 244

Query: 245 GIVFLDEFDK--IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             V L++  K  I  +  G G  +  +  +++LL LV+   +  K+G             
Sbjct: 245 AFVGLEDIIKQRIGKKSIGFGADIKSKSEEKELLSLVQPEDL-IKFG------------- 290

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L+ L++     +LT+ ++ LI QYK L+  +GI L+F
Sbjct: 291 ---------LIPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEF 341

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           TED++  +A  A+   +     GAR L+ ++E ++ D+ + A + +  K V+ID + V  
Sbjct: 342 TEDALREIAREAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVVLK 396

Query: 422 HIGDFPSET 430
                    
Sbjct: 397 QKPPIYVNE 405


>gi|257455805|ref|ZP_05621031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter
           aerosaccus SK60]
 gi|257446819|gb|EEV21836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter
           aerosaccus SK60]
          Length = 427

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 177/430 (41%), Gaps = 92/430 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53
           +P+EI S LD Y+IGQ  AK+ +A+A+ N ++R ++   L +              EL  
Sbjct: 69  TPKEIRSHLDEYVIGQDKAKKTLAVAVYNHYKRLKVSEKLSEDKALTTLGAEDAMVELSK 128

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   
Sbjct: 129 SNILLIGPTGSGKTLLAQTLARLLDVPFALADATTLTEAGYVGEDVENIVQKLLQAAEFD 188

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V  +++  +         + I          S TR+V  + ++   +  K I+  VA+  
Sbjct: 189 VERAQKGIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVANIP 239

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                                              +   Q+               M  V
Sbjct: 240 PQGG------------------------------RKHPNQE---------------MIQV 254

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I ++       LD    I  R    GIG + E              V  K     T
Sbjct: 255 DTSNILVICGGAFAGLDNV--IQQRTEKTGIGFNAE--------------VKAKDSGKKT 298

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
              LF       + +   L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L 
Sbjct: 299 GE-LFKQVEPEDLIK-FGLIPELIGRLPVVATLEELDEEALVQILTEPKNALVKQYEYLF 356

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTV 412
           + E   L FT+D++ A+A  A+   +     GAR L++++E  L D  +    +   KTV
Sbjct: 357 EMENATLSFTDDALVAIAKQALKRRT-----GARGLRSIVENALLDTMYELPSMTPGKTV 411

Query: 413 VIDAEYVRLH 422
            ++   +  +
Sbjct: 412 TVNKAVIDNN 421


>gi|84387736|ref|ZP_00990752.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
 gi|84377419|gb|EAP94286.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus
           12B01]
          Length = 426

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/417 (24%), Positives = 164/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKRLRNGDTTAEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA               
Sbjct: 185 -----IDEIDKISRKAENPSITRDVSGEGVQQALL--KLVEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ V + S  G G              E  +V   +  +  + ++       
Sbjct: 253 FSGLDKVIEQRVEKGSSIGFGAEVRSKD-------EAKTVGELFTQVEPEDLV------- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL + ++ L  QY  L + E   L+F +
Sbjct: 299 ----KYGLIPEFIGRLPVTTTLTELDEEALVQILCEPKNALTKQYAALFEIEETELEFRD 354

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A+   +     GAR L++++E VL +  +      +   VVID   + 
Sbjct: 355 DALRAIAKKAMERKT-----GARGLRSILEGVLLETMYELPSSTDVSKVVIDESVIN 406


>gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
 gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp.
           Nb-311A]
          Length = 400

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 172/415 (41%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 41  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 101 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 156

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 157 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 181

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 182 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 226

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR     IG + + +  +     E       +  +  + +L         
Sbjct: 227 SGLEKI--ISARGRTTSIGFAAQVLAPEDRRTGEI------FRHVEPEDLL--------- 269

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + ILTD ++ L+ QY+ L + E I L F +++
Sbjct: 270 --KYGLIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEA 327

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L++++E +L +  F    L+  + VVI  E V 
Sbjct: 328 LGAVARKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVVE 377


>gi|167746333|ref|ZP_02418460.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|317470743|ref|ZP_07930128.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|167654326|gb|EDR98455.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662]
 gi|316901878|gb|EFV23807.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 433

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 170/425 (40%), Gaps = 79/425 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI + LD Y+IGQ +AK+ +++A+ N ++R  L      +L   NI+++GPTG GKT
Sbjct: 66  KPKEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRILLGDSSDIDLQKSNIIMLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +        R Q  
Sbjct: 126 LLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIE-------RAQCG 178

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I   + I         TS TR+V  + ++   +    I+  VA                 
Sbjct: 179 IIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI--IEGTVASVPPQGGRKHPHQE--- 233

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                               I       +  L +      I    + + SI         
Sbjct: 234 ------------FIQIDTTNILFICGGAFDGLEK------IIESRIGQKSIG-------- 267

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F  E         GNG       + + +LP                D + F         
Sbjct: 268 FNAEI--------GNGQKEDIGSLLQQVLPE---------------DFVKF--------- 295

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV V L  L++     IL + +S L+ QY++L + +G+ L+F + ++
Sbjct: 296 ---GLIPEFIGRVPVNVSLNPLDREALVRILKEPKSALVKQYQKLFELDGVDLEFEDGAL 352

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDF 426
           +A+A+ A+   +     GAR L+ +ME V+ D+ +    D +    VI    V       
Sbjct: 353 EAIAEKAMERKT-----GARGLRAIMEGVIMDLMYQVPSDEKVSKCVITRGVVESSEEPV 407

Query: 427 PSETD 431
              +D
Sbjct: 408 IERSD 412


>gi|187928949|ref|YP_001899436.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
 gi|238691846|sp|B2UFQ3|CLPX_RALPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187725839|gb|ACD27004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia
           pickettii 12J]
          Length = 424

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 177/417 (42%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 220 -------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFICGG 252

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R    GIG   E      +   E   VS     +  + ++        
Sbjct: 253 AF-DGLEKIIMQRSDKTGIGFGAE------VQSKEERDVSEVLPQVEPEDLIKF------ 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ ++ QY++L+  EG+ L+    
Sbjct: 300 -----GLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPS 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            + A+A  A+   +     GAR L++++E  L D+ +   + +  + VVID   +  
Sbjct: 355 GLTAIARKAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTISD 406


>gi|218440072|ref|YP_002378401.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           7424]
 gi|226706581|sp|B7KBH7|CLPX_CYAP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218172800|gb|ACK71533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7424]
          Length = 447

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 172/437 (39%), Gaps = 97/437 (22%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDEL 51
           + L     PREI   LD Y+IGQ +AK+ +++A+ N ++R              D   EL
Sbjct: 75  LSLGQIPKPREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRLSDIQAKRTGTGATDDPVEL 134

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 135 QKSNILLMGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 194

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
             V E++R  +                                         EID ++A 
Sbjct: 195 LDVEEAQRGII--------------------------------------YIDEID-KIAR 215

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S + S      G  V    L  L   V     +   +   Q C                
Sbjct: 216 KSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI------------- 262

Query: 232 TVHRDSIQMVENYGIVFLDEF--DKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVST 286
                +I  +     V LD+    ++  +  G      G S+E    DLL  +E   +  
Sbjct: 263 --DTSNILFICGGAFVGLDKIVEQRLGKKSMGFIRPAEGTSKEKWSADLLKQLEPDDL-V 319

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G I                      PE  GR PV   L  L++     ILT   + L+
Sbjct: 320 KFGMI----------------------PEFVGRIPVMASLDPLDEDALIAILTQPRNALV 357

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY++L+K + + L+F  +++ A+A  A    +     GAR L+ ++E ++ ++ +    
Sbjct: 358 KQYQKLLKMDNVQLEFKSEAVRAIAQEAYRRKT-----GARALRGIVEELMLEVMYELPS 412

Query: 407 LQE-KTVVIDAEYVRLH 422
            ++ K  +I  E V   
Sbjct: 413 RKDVKRCLITREMVEKR 429


>gi|225459904|ref|XP_002264217.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 665

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/429 (22%), Positives = 173/429 (40%), Gaps = 86/429 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELM 52
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R    +               D   EL 
Sbjct: 248 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHGSLQKGSGAESGTSEVDDDSVELE 307

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA  
Sbjct: 308 KSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVAEF 367

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V+ +++  V            +D                             +++    
Sbjct: 368 NVQAAQQGMVY-----------ID-----------------------------EVDKITK 387

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
            ++  N             L ++    + +  +K  R   +                 D 
Sbjct: 388 KAESLNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG----------------DN 431

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +  D+  ++   G  F+D    I  R   + IG             +  + V T     +
Sbjct: 432 IQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTGGLTNAVV-TSSLLES 490

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
            +    IA G         L+PE  GRFP+ V L +L +     +LT+ ++ L  QYK+L
Sbjct: 491 VESSDLIAYG---------LIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGKQYKKL 541

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                + L FTE ++  +A  A+  N+     GAR L+ ++E +L +  +   D++    
Sbjct: 542 FSMNNVKLHFTEKALRQIAKKAMVKNT-----GARGLRALLESILTEAMYEIPDVKTGKD 596

Query: 413 VIDAEYVRL 421
            +DA  V  
Sbjct: 597 RVDAVVVDE 605


>gi|154506029|ref|ZP_02042767.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
 gi|153793528|gb|EDN75948.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149]
          Length = 424

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 176/417 (42%), Gaps = 79/417 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD Y+IGQ +AK+ +++A+ N ++R    +DL  +L   NIL++GPTG GK
Sbjct: 65  LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAGSDLGVDLQKSNILMLGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 125 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVESILLKVIQAADGDI------------ 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S + S      G  
Sbjct: 173 -ERAEHGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 206 VQQALLKIIEGTVASVPPQGGRKHPHQE------------LIQIDT---TNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG + E  ++                    D  + +       
Sbjct: 251 EGIDKI--IETRLDKKSIGFNAEIAKKHE-----------------EDVDVLLHQVLPQD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L  L+K     ILT+ +S+L+ QY++LM+ +G+ L+F + +
Sbjct: 292 LVKFGLIPELVGRVPVTVSLDLLDKEALIRILTEPKSSLVKQYQKLMELDGVKLEFDKAA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +DA+A+ ++   +     GAR L+ +ME ++ D  F    D   K  +I  + V   
Sbjct: 352 LDAIAETSLARKT-----GARGLRAIMEDIMMDTMFRVPSDDTIKGCMITKDVVEGK 403


>gi|167835014|ref|ZP_02461897.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
          Length = 280

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 128/282 (45%), Positives = 192/282 (68%), Gaps = 17/282 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EIVSELD++IIGQ  AK+AVA+ALRNRWRRQQ+   LR E+ PKNIL++GPTGVGK
Sbjct: 1   MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++   RE+   +VR +A
Sbjct: 61  TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120

Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +  AE+RILD L+ +                 + TR+ FRK+LR+G++ DKEI++++   
Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +  +     PG   +    +  +FS  +G G+K++ ++ +++    L  +E+ ++++ + 
Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQR 273
           V   ++Q VE  GIVFLDE DKI +R+  G G  VSR+GVQR
Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQR 280


>gi|323489955|ref|ZP_08095176.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
 gi|323396251|gb|EGA89076.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
          Length = 423

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 183/431 (42%), Gaps = 81/431 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI+L+GPTG GK
Sbjct: 63  KPKEILDILNGYVIGQEKAKKSLAVAVYNHYKRVNSNSKIDDVELSKSNIVLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -ERAEKGII-------------------------YIDEID-KVARKSENTSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L         +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTTASVPPQGGRKHP-----------------HQEFIQIDTTNVLFIVGG 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F D  D+I+ R  GN I     G   +   + E S +S     I  D + F        
Sbjct: 247 AF-DGVDQIIKRRLGNKI--IGFGADPNKEEIDEKSLLSQ---LIPEDLLKF-------- 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT+ ++ LI QY+++M+ +G+ L F  ++
Sbjct: 293 ----GLIPEFIGRLPVLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFDPEA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A +A+   +     GAR L++++E  + ++ F     ++    VI  E V   +  
Sbjct: 349 LVAIARLAIERKT-----GARGLRSIIENTMLEVMFDLPSREDIVECVITKETVDDSVPP 403

Query: 426 FPSETDMYHFI 436
                D   ++
Sbjct: 404 KLILEDGSEYV 414


>gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium
           radiotolerans JCM 2831]
 gi|238688765|sp|B1LW29|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Methylobacterium radiotolerans JCM 2831]
          Length = 423

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/417 (24%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I  R  G  IG               G++V       +        S     
Sbjct: 251 AGLERI--ISQRGKGTSIGF--------------GATVQAPD---DRRTGEIFRSVEPED 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++  + IL + ++ L+ QY+ L + E + L F +++
Sbjct: 292 LLKFGLIPEFVGRLPVLATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L++++E +L D  +    L+  + VVI  E V   
Sbjct: 352 LSLVARKAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVVEGK 403


>gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
 gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens
           NRL30031/H210]
          Length = 421

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 188/430 (43%), Gaps = 79/430 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 229 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + +S  + ++  + ++         
Sbjct: 251 AFAGLEKVIRQRTEKGGIGFGAAVHSKD-----ENADISALFETVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED+
Sbjct: 299 ----GLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGD 425
           + ++A +A+   +     GAR L++++ER L D  ++  DL+    VVI+ E V      
Sbjct: 355 LRSIAKLAMERKT-----GARGLRSIVERCLLDTMYALPDLKGVAKVVINKEVVEKGEQP 409

Query: 426 FPSETDMYHF 435
                D   +
Sbjct: 410 KLFREDGSEY 419


>gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo
           subsp. melo]
          Length = 571

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 177/431 (41%), Gaps = 88/431 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----------------DLRDE 50
           +P+EI   LD+++IGQ  AK+ +++ + N ++R    +                 D + E
Sbjct: 157 TPKEIAKGLDKFVIGQDRAKKVLSVGVYNHYKRIYHESLQRPTGDAFNNKADAADDDKVE 216

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 217 LEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVA 276

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  +++  V            +D                             +++  
Sbjct: 277 DYNVAAAQQGIVY-----------ID-----------------------------EVDKI 296

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              ++  N             L ++    + +  +K  R   +                 
Sbjct: 297 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG---------------- 340

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           + +  D+  ++   G  F+D    I  R   + +G             V  + V      
Sbjct: 341 ENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMV------ 394

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             T  +L     +  ++    L+PE  GRFP+ V L +L ++    +LT+ ++ L  QY+
Sbjct: 395 --TSSLLETVESSDLIA--YGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYR 450

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           ++ +   + L FTE+++  +A  A++ N+     GAR L++++E +L D  +   D++  
Sbjct: 451 KMFQMNDVKLHFTENALRLIARKAMSKNT-----GARGLRSILENLLMDSMYEIPDIRTG 505

Query: 411 TVVIDAEYVRL 421
             +IDA  V  
Sbjct: 506 KDIIDAVVVDE 516


>gi|311031427|ref|ZP_07709517.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus sp.
           m3-13]
          Length = 422

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 174/422 (41%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPKEIRDILDEYVIGQESAKKSLSVAVYNHYKRINSNSKIDDVELAKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            F D  ++I+ R  G    G G +           + G  +         D + F     
Sbjct: 247 AF-DGIEQIIKRRLGKKVIGFGTAETKADDLEQKELLGKVLP-------EDLLRF----- 293

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L  L++     ILT  ++ L+ QY++++  + + L+F 
Sbjct: 294 -------GLIPEFIGRLPVTASLMPLDEDALIEILTKPKNALVKQYQKMLDLDNVELEFE 346

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           E ++  +A  A+   +     GAR L++++E ++ D+ +     ++ K  VI AE V  +
Sbjct: 347 EGALTEIAKKAIERKT-----GARGLRSIIEGIMLDVMYELPSREDIKKCVITAETVADN 401

Query: 423 IG 424
           + 
Sbjct: 402 VA 403


>gi|242062022|ref|XP_002452300.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
 gi|241932131|gb|EES05276.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor]
          Length = 640

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 175/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R    +                  D   
Sbjct: 230 TPKEICKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGGFDGEADDDDNV 289

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 290 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 349

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V+ +++  V            +D                             +++ 
Sbjct: 350 ADFNVQAAQQGMVY-----------ID-----------------------------EVDK 369

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 370 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 414

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG             +  + V++   
Sbjct: 415 -DNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLL 473

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + +    IA G         L+PE  GRFP+ V L +LN+     +LT+ ++ L  Q+
Sbjct: 474 E-SVESGDLIAYG---------LIPEFIGRFPILVSLAALNEDQLVQVLTEPKNALGKQF 523

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L     + L FT+ ++  +A  A++ N+     GAR L+T++E +L D  +   D + 
Sbjct: 524 KKLFSMNNVKLHFTDGALRIIAKKAMSKNT-----GARGLRTILETILMDSMYEIPDARS 578

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 579 GEKRIDAVVVDE 590


>gi|75909808|ref|YP_324104.1| ATP-dependent protease ATP-binding subunit ClpX [Anabaena
           variabilis ATCC 29413]
 gi|123745060|sp|Q3M727|CLPX_ANAVT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|75703533|gb|ABA23209.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Anabaena
           variabilis ATCC 29413]
          Length = 446

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 97/437 (22%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------QLPADLRDEL 51
           + L+    PREI   LD ++IGQ +AK+ +++A+ N ++R          +  AD   EL
Sbjct: 74  LSLSQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSSKNGADDAVEL 133

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 134 QKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193

Query: 112 NIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             V E++R     DE+ + A  +    I   + G+       ++    + +         
Sbjct: 194 LDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKH 253

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                   D SN     G +   L                                  ++
Sbjct: 254 PYQDCIQIDTSNILFICGGAFVGL----------------------------------EK 279

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++D     + SI  V+                    G G S+E    D+L  +E   +  
Sbjct: 280 VVDQ-RGGKKSIGFVQ-------------------PGEGQSKEKRAADVLRHLEPDDL-V 318

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G I                      PE  GR P+   +  L++     ILT   S L+
Sbjct: 319 KFGMI----------------------PEFIGRVPMVAVVDPLDEEALMAILTQPRSALV 356

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY++L+K + + LDF  D++ A+A  A    +     GAR L+ ++E ++ D+ +    
Sbjct: 357 KQYQKLLKMDNVQLDFKPDALKAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPS 411

Query: 407 LQEKT-VVIDAEYVRLH 422
            ++ T   +  E V   
Sbjct: 412 RKDVTRCTVTREMVEKR 428


>gi|119774362|ref|YP_927102.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
 gi|166215200|sp|A1S4X6|CLPX_SHEAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119766862|gb|ABL99432.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella
           amazonensis SB2B]
          Length = 425

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 166/415 (40%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLRNAGPKDGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 126 TLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     +++I+  T     I        
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----EKVIEQRTHTGSGIGFGAQV-- 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                             G   +    D+L  VE   +  KYG I               
Sbjct: 275 -----------------KGKEEKESMSDILSQVEPEDL-VKYGLI--------------- 301

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR PV   L  L++     IL++ ++ L  QY  L + E + L+F ED+
Sbjct: 302 -------PEFIGRLPVVATLAELDEDALIQILSEPKNALTKQYAALFEMENVELEFREDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E +L D  +     Q     V+D   V+
Sbjct: 355 LKAIAQKAMSRKT-----GARGLRSIVEGILLDTMYDLPSQQGVSKAVVDESVVK 404


>gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
 gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           subflava NJ9703]
          Length = 421

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 189/430 (43%), Gaps = 79/430 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 229 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + +S  + ++  + ++         
Sbjct: 251 AFAGLEKVIRQRTEKGGIGFGAAVHSKD-----ENADISALFETVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED+
Sbjct: 299 ----GLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGD 425
           + ++A +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V      
Sbjct: 355 LRSIAKLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVVEKGEQP 409

Query: 426 FPSETDMYHF 435
                D   +
Sbjct: 410 KLFREDGSEY 419


>gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
 gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
          Length = 425

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/414 (26%), Positives = 175/414 (42%), Gaps = 86/414 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64
           PREI   LD+Y+IGQ+ AK+ +++A+ N ++R +           EL   NILLVGPTG 
Sbjct: 66  PREICQILDQYVIGQESAKKILSVAVYNHYKRLRNIPRSDETDDIELSKSNILLVGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PFI  + T  TE GYVG +VE II+ L+        +++R  V  
Sbjct: 126 GKTLLAQTLARLLDVPFIMADATALTEAGYVGEDVENIIQKLLQKCNYDAEKAQRGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E  I +               
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAMVPPQGG--------- 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +                   + + +  D+  ++   
Sbjct: 230 -----------------------RKHP-----------------NQEFIQVDTTNILFIC 249

Query: 245 GIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  D+ I AR    GIG   E      +    G  V+     +  + ++      
Sbjct: 250 GGAF-DGLDRVIRARTEKGGIGFGVE------VKSHSGKDVNKVLQQVEPEDLVKF---- 298

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDF 362
                   L+PE  GR PV   L+ LN++    ILT+ ++ L+ QY ++   E G+ L+F
Sbjct: 299 -------GLIPEFVGRLPVVATLEELNEAALIQILTEPKNALVKQYWKMFNMEGGVDLEF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
            E ++ A+A  A+   +     GAR L++++E +L DI +    L+  T VVID
Sbjct: 352 REPALKAIAKKALTRKT-----GARGLRSILEEILLDIMYDLPSLENVTKVVID 400


>gi|15837790|ref|NP_298478.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           9a5c]
 gi|21263488|sp|Q9PE40|CLPX_XYLFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9106158|gb|AAF83998.1|AE003953_2 ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa 9a5c]
          Length = 426

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 171/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V  ++   V    
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVERAQHGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +       K I       +  L     D++I         I        
Sbjct: 228 ----GGRKHPQQEFLQVDTKNILFICGGAFAGL-----DKVIQQRCTEAGGIGFGV---- 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                  K+ + +S   +G    GV+ + L          K+G I               
Sbjct: 275 -------KVKSSESKRDVGKVLAGVEPEDL---------IKFGLI--------------- 303

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D+
Sbjct: 304 -------PEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+T++E VL D  +     +    VV+D   +   
Sbjct: 357 LSAVARKALKRKT-----GARGLRTIVELVLLDTMYELPSQEGISKVVVDESVIENK 408


>gi|71276512|ref|ZP_00652787.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon]
 gi|170729733|ref|YP_001775166.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           M12]
 gi|238687959|sp|B0U5N2|CLPX_XYLFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71162689|gb|EAO12416.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon]
 gi|167964526|gb|ACA11536.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa M12]
          Length = 426

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 172/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V    
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQHGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 185 ----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +       K I       +  L     D++I         I        
Sbjct: 228 ----GGRKHPQQEFLQVDTKNILFICGGAFAGL-----DKVIQQRCTEAGGIGFGV---- 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                  K+ + +S   +G    GV+ + L          K+G I               
Sbjct: 275 -------KVKSSESKRDVGKVLAGVEPEDL---------IKFGLI--------------- 303

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR PV   L  L++S    ILT+ ++ +  Q+K+L + E + L+F +D+
Sbjct: 304 -------PEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+T++E VL D  +     +    VV+D   +   
Sbjct: 357 LSAVARKALKRKT-----GARGLRTIVELVLLDTMYELPSQEGISKVVVDESVIENK 408


>gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
 gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           flavescens SK114]
          Length = 421

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 188/430 (43%), Gaps = 79/430 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 229 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + +S  + ++  + ++         
Sbjct: 251 AFAGLEKVIRQRTEKGGIGFGAAVHSKD-----ENADISALFETVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+F ED+
Sbjct: 299 ----GLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFAMEDVGLEFEEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGD 425
           + ++A +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V      
Sbjct: 355 LRSIAKLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVVEKGEQP 409

Query: 426 FPSETDMYHF 435
                D   +
Sbjct: 410 KLFREDGSEY 419


>gi|282880881|ref|ZP_06289574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305263|gb|EFA97330.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           timonensis CRIS 5C-B1]
          Length = 414

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/424 (25%), Positives = 175/424 (41%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ DAKR +++++ N ++R Q P +    E+   NI++VG TG GK
Sbjct: 67  KPKEIKKYLDDYIIGQDDAKRYLSVSVYNHYKRLQQPKNEDGVEIEKSNIIMVGSTGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 127 TLLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERGIV---- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 183 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 207 GVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTKNILFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +                 S ++   N D    +       
Sbjct: 251 AFDGIERKIAQRLNTHVVGYN-----------------SVQHVR-NIDKGDLMKYILPQD 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L+K   R IL + +++++ QY +L + +GI L F  ++
Sbjct: 293 LKSFGLIPEIIGRLPVLTYLNPLDKEALRKILVEPKNSIVKQYIKLFEMDGIQLTFANEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +D + D AV        +GAR L++++E ++ D  F     + K+  +  +Y +  +   
Sbjct: 353 LDFIVDKAVEYK-----LGARGLRSIVESMMMDAMFEIPSKRTKSFEVTLDYAQKQLNKA 407

Query: 427 PSET 430
               
Sbjct: 408 NLNK 411


>gi|15603842|ref|NP_246916.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431416|sp|P57981|CLPX_PASMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12722416|gb|AAK04061.1| ClpX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 411

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 174/418 (41%), Gaps = 80/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 62  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ LV      V            
Sbjct: 122 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDV------------ 169

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++   S + S      G  
Sbjct: 170 -ERAEQGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+               M  V    I  +     
Sbjct: 203 VQQALLKLIEGTVASIPPQGGRKHPQQE---------------MLRVDTSKILFICGGAF 247

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  +K V   SG G     +  Q         +++S  +  +  D ++        
Sbjct: 248 AGLDKVIEKRVHVGSGIGFSAEVKSKQDK-------ATLSQLFEQVEPDDLMKF------ 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     ILT+ ++ LI QY+ L   E + L+F+ +
Sbjct: 295 -----GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPE 349

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++ A+A  A+   +     GAR L++++E +L D  +    LQ  + V+++A  +  +
Sbjct: 350 ALTAMAKKALARKT-----GARGLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDN 402


>gi|228987724|ref|ZP_04147835.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771998|gb|EEM20453.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 444

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  V+  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCVLTKETV 422


>gi|153814159|ref|ZP_01966827.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|317499958|ref|ZP_07958194.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087819|ref|ZP_08336744.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848555|gb|EDK25473.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756]
 gi|316898675|gb|EFV20710.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409514|gb|EGG88955.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 423

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 172/421 (40%), Gaps = 79/421 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDI------------ 171

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S + S      G  
Sbjct: 172 -ERAEHGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 205 VQQALLKIIEGTVASVPPQGGRKHPHQE------------LIQIDT---TNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG + E  ++                    D  + +       
Sbjct: 250 EGIDKI--IETRLDRKSIGFNAEIAEKHEY-----------------DMDVLLQEVLPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F  D+
Sbjct: 291 LVKFGLIPELIGRLPVTVTLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDRDA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGD 425
           + A+A+  +   +     GAR L+ +ME+++ D  +    D   K   I  + V      
Sbjct: 351 LIAVAETTLKRKT-----GARGLRAIMEKIMMDTMYQVPSDETIKECRITRDVVEGKGEP 405

Query: 426 F 426
            
Sbjct: 406 L 406


>gi|229158089|ref|ZP_04286159.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 4342]
 gi|228625408|gb|EEK82165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 4342]
          Length = 444

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  V+  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCVLTKETV 422


>gi|169634425|ref|YP_001708161.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii SDF]
 gi|169797266|ref|YP_001715059.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AYE]
 gi|184156808|ref|YP_001845147.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii ACICU]
 gi|213155940|ref|YP_002317985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB0057]
 gi|215484707|ref|YP_002326942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB307-0294]
 gi|239500789|ref|ZP_04660099.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB900]
 gi|260556148|ref|ZP_05828367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 19606]
 gi|301346761|ref|ZP_07227502.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB056]
 gi|301512253|ref|ZP_07237490.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB058]
 gi|301594242|ref|ZP_07239250.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii AB059]
 gi|332851227|ref|ZP_08433300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013150]
 gi|332866081|ref|ZP_08436809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013113]
 gi|332873221|ref|ZP_08441178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6014059]
 gi|226706570|sp|B7H092|CLPX_ACIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706571|sp|B7I5E4|CLPX_ACIB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238685491|sp|A3M1Y8|CLPX_ACIBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688025|sp|B0V4T7|CLPX_ACIBY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688111|sp|B0VKU4|CLPX_ACIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691033|sp|B2I3C2|CLPX_ACIBC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169150193|emb|CAM88087.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AYE]
 gi|169153217|emb|CAP02313.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii]
 gi|183208402|gb|ACC55800.1| ATP-dependent protease Clp, ATPase subunit [Acinetobacter baumannii
           ACICU]
 gi|193076290|gb|ABO10932.2| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055100|gb|ACJ40002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB0057]
 gi|213988694|gb|ACJ58993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii AB307-0294]
 gi|260410203|gb|EEX03502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 19606]
 gi|322506700|gb|ADX02154.1| clpX [Acinetobacter baumannii 1656-2]
 gi|323516574|gb|ADX90955.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332730107|gb|EGJ61434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013150]
 gi|332734827|gb|EGJ65920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6013113]
 gi|332738733|gb|EGJ69603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           baumannii 6014059]
          Length = 437

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 169/428 (39%), Gaps = 82/428 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++          E+   NILL+GPTG
Sbjct: 62  KPHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++  + 
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 182 -------IDEIDKITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------ 226

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                                ++          +   +I  +  
Sbjct: 227 --------------------------------RKHPQQEFIQ-------IDTSNILFICG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   +  R    GIG + +   +D    +       +     TD + F     
Sbjct: 248 GAFAGLEKI--VQQRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF----- 296

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F 
Sbjct: 297 -------GLIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFE 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + ++ A+A  A+  N+     GAR L++++E VL +  +      +  TV I+   +   
Sbjct: 350 DSALRAVAKRALERNT-----GARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGE 404

Query: 423 IGDFPSET 430
                   
Sbjct: 405 AEPVYKSE 412


>gi|83858430|ref|ZP_00951952.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853253|gb|EAP91105.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 424

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/401 (26%), Positives = 162/401 (40%), Gaps = 79/401 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   L  Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPQEIFQVLQDYVIGQAKAKRVLSVAVHNHYKRLNHAGQNGDVELSKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  +                   
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +         I   V   +  L             + +        +G 
Sbjct: 227 ------RKHPQQEFLQVDTTNILFIVGGAFAGLEGI----------ISQRGKGSAVGFGA 270

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D  D    R             Q ++L  VE   + TK+G I               
Sbjct: 271 ---DVRDPDARR-------------QGEVLAEVEPDDL-TKFGLI--------------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR PV   L+ L+ +    ILT+ ++ L+ QY+ L + EG+ L FTED+
Sbjct: 299 -------PEFVGRLPVIATLEDLDVAALVQILTEPKNALVKQYQRLFEMEGVGLSFTEDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           + A+A+ A+N  +     GAR L+++ME +L D  F    L
Sbjct: 352 LTAIAEKAINRKT-----GARGLRSIMEGILLDTMFDLPSL 387


>gi|167646808|ref|YP_001684471.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter sp.
           K31]
 gi|189082487|sp|B0SZ62|CLPX_CAUSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167349238|gb|ABZ71973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           sp. K31]
          Length = 420

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/401 (25%), Positives = 159/401 (39%), Gaps = 79/401 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQNHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+    I AR  G  IG   +    +     E                  +       
Sbjct: 251 AGLERI--ISARGQGKSIGFGAKVADPEERRTGE-----------------ILRGVEPDD 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L FTED+
Sbjct: 292 LQRFGLIPEFIGRLPVIATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           +  +A  A+   +     GAR L+++ME +L +  F   + 
Sbjct: 352 LHGVAKKAILRKT-----GARGLRSIMEGILLETMFELPNY 387


>gi|229163428|ref|ZP_04291379.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus R309803]
 gi|228619997|gb|EEK76872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus R309803]
          Length = 444

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  V+  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCVLTKETV 422


>gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
 gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           fischeri MJ11]
          Length = 428

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 166/417 (39%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR I   LD Y+IGQ+ AK+ +A+A+ N ++R +     +D  EL   NILL+GPTG G
Sbjct: 69  TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+        ++ R  V   
Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDPAKAERGIVY-- 186

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  +A               
Sbjct: 187 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG-------- 231

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 232 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 254

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G        +       +++   +  I  + ++       
Sbjct: 255 FAGLDKVIEQRVATGTGIGFGADVRSKDNE-------ATIGDLFKQIEPEDLVKF----- 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL+  ++ L  QY  L   EG  L+F E
Sbjct: 303 ------GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFRE 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A++  +     GAR L++++E VL +  +     +    VVID   + 
Sbjct: 357 DALKAIAKKAMDRKT-----GARGLRSILEAVLLETMYELPSKEGVSKVVIDESVIN 408


>gi|126653683|ref|ZP_01725602.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|169829419|ref|YP_001699577.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           sphaericus C3-41]
 gi|238688198|sp|B1HVE5|CLPX_LYSSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126589720|gb|EAZ83855.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|168993907|gb|ACA41447.1| ATP-dependent Clp protease ATP-binding subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 423

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 180/417 (43%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GK
Sbjct: 63  KPKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDVELAKSNIVLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDI------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -ERAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHPHQEFL---------------QIDTTNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++    I  R     IG    G   +++ + EGS +S     I  D + F        
Sbjct: 249 DGIESI--IKRRQGEKIIGF---GSDPNIVDVDEGSIMS---KLIPEDLLKF-------- 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ LN++    ILT+ ++ L  QY+++++ +G+ L+F E +
Sbjct: 293 ----GLIPEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEGA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L++++E  + D+ +     ++ K  +I A+ +   
Sbjct: 349 LAEIAKEAIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTITDK 400


>gi|119503320|ref|ZP_01625404.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119460966|gb|EAW42057.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 426

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 166/417 (39%), Gaps = 82/417 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGV 64
           P EI + LD+Y+IGQQ AKR +A+A+ N ++R +   D R     EL   NILLVGPTG 
Sbjct: 66  PFEINAILDQYVIGQQRAKRVLAVAVYNHYKRLRYTPDTRSGDDVELSKSNILLVGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V  ++   V  
Sbjct: 126 GKTLLAETLARLLDVPFTVADATTLTEAGYVGEDVENIIQKLLQKCDYDVERAQMGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+                  V   +I  +   
Sbjct: 230 -----------------------RKHPQQEFL---------------QVDTSNILFICGG 251

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LD+   I  R    GIG + E   +D                        I+    
Sbjct: 252 AFAGLDKI--IRNRSEKGGIGFTAEVKSKDETR----------------RFGEMISDLEP 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+      ILT+  + L  QY ++   EG+ +DF E
Sbjct: 294 EDLVQYGLIPEFVGRLPVIATLEELDIEALVRILTEPRNALTKQYAKMFDMEGVEIDFRE 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           D + A+A+ A+   +     GAR L++++E VL +  ++    Q    +V+D   ++
Sbjct: 354 DGLRAVAERAMERKT-----GARGLRSILENVLLESMYNVPSQQNVAKIVVDESVIQ 405


>gi|17231176|ref|NP_487724.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc sp. PCC
           7120]
 gi|21263468|sp|Q8YQX7|CLPX_ANASP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17132817|dbj|BAB75383.1| ATP-dependent Clp protease regulatory subunit [Nostoc sp. PCC 7120]
          Length = 445

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 179/431 (41%), Gaps = 86/431 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELM 52
           + L+    PREI   LD ++IGQ +AK+ +++A+ N ++R  +          D   EL 
Sbjct: 74  LSLSQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSGKNGDDAVELQ 133

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA  
Sbjct: 134 KSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADL 193

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V E++R  +         + I          S TR+V  + ++   +  K ++  VA+ 
Sbjct: 194 DVEEAQRGIIY-------IDEIDKIARKSENPSITRDVSGEGVQQALL--KMLEGTVANV 244

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                     G        +    S ++               +  L     ++++D   
Sbjct: 245 PPQ------GGRKHPYQDCIQIDTSNIL---------FICGGAFVGL-----EKVVDQ-R 283

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
             + SI  V+                    G G S+E    D+L  +E   +  K+G I 
Sbjct: 284 GGKKSIGFVQ-------------------PGEGQSKEKRAADVLRHLEPDDL-VKFGMI- 322

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                                PE  GR P+   +  L++     ILT   S L+ QY++L
Sbjct: 323 ---------------------PEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKL 361

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT- 411
           +K + + LDF  D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ T 
Sbjct: 362 LKMDNVQLDFKPDALKAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVTR 416

Query: 412 VVIDAEYVRLH 422
             +  E V   
Sbjct: 417 CTVTREMVEKR 427


>gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
 gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas
           paucivorans DSM 12260]
          Length = 428

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/417 (23%), Positives = 169/417 (40%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R   P D  + EL   N+LLVGPTG GK
Sbjct: 74  KPEEIKAFLDQYVIGQEQAKKVLSVAVYNHYQRISSPQDGDEVELPKSNVLLVGPTGCGK 133

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A    + + R  +    
Sbjct: 134 TLLAQSLAKLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDPKTAERGIIY--- 190

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        + S TR+V  + ++   +   E                      
Sbjct: 191 ----IDEIDKISRKSESPSITRDVSGEGVQQALLRILE---------------------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     S V   G +K                      + D +  D+  ++   G 
Sbjct: 225 -------GTLSNVPPKGGRKHP--------------------NQDFIQMDTRNILFICGG 257

Query: 247 VF--LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
            F  L+    I  R     IG   E                   G    +      +   
Sbjct: 258 AFDGLEPI--IARRTRRKVIGFGGE----------------LSSGQDAEERNALFRAIQP 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                   +PE  GR PV V L SL+++    IL + ++ L+ QY+++   EG+ L+FT 
Sbjct: 300 EDLMSYGFIPEFVGRLPVVVPLDSLDENALTRILREPKNALLRQYQKVFSLEGVELEFTL 359

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--QEKTVVIDAEYV 419
           +++ A+A  A+   +     GAR L++++E  + ++ +       +   V ID + +
Sbjct: 360 EAVRAVARRALERKT-----GARALRSILESTMLELMYDLPSQAARVGKVRIDEDVI 411


>gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC
           BAA-613]
          Length = 416

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 177/417 (42%), Gaps = 81/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ DAK+ +++A+ N ++R     ++  ++   NIL+VGPTG GK
Sbjct: 45  LKPKEIKAFLDEYVIGQDDAKKVLSVAVYNHYKRVTACQNMDVDVQKSNILMVGPTGSGK 104

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 105 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISRAEYGII---- 160

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 161 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 185

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                     D+  ++   G 
Sbjct: 186 VQQALLKILEGTVASVPPQGGRKHPHQELLQI-----------------DTTNILFICGG 228

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R S   IG + E   ++ L + E                L        
Sbjct: 229 AF-DGLEKIVEQRLSAGSIGFNAEVANKNDLNIDE----------------LLKKVEPKD 271

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +++   L+PE  GR PV V L+ L K     IL++ ++ L+ QY++L + + + L+FT++
Sbjct: 272 LTK-FGLIPEFIGRVPVMVSLEQLTKDAMVRILSEPKNALMRQYQKLFELDNVKLEFTQE 330

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           +++ +A +AV+       IGAR L++++E V+ D+ +    D       I  + V+ 
Sbjct: 331 ALEEIAQLAVDRK-----IGARGLRSILESVMMDLMYEIPSDDSIGICTITRDVVKK 382


>gi|332532269|ref|ZP_08408150.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038367|gb|EGI74812.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 427

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 170/414 (41%), Gaps = 78/414 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY---- 185

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 186 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------------ 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +        KI       +  L     D++I+  +     I         
Sbjct: 229 ---GGRKHPQQEFLQVDTSKILFICGGAFSGL-----DKVIEQRSHKNTGIGFG------ 274

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +  ++S     +S      +   L        KYG                  
Sbjct: 275 -------VSVKESAASRSLSETFKDVEPEDL-------VKYG------------------ 302

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++
Sbjct: 303 ----LIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E VL D  +    + +   VVID   ++
Sbjct: 359 AAIAHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDDVSKVVIDETVIK 407


>gi|329119329|ref|ZP_08248015.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464474|gb|EGF10773.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 422

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 180/426 (42%), Gaps = 79/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           SP EIV+ L+ ++IGQ+ AK+A+A+A+ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 62  SPAEIVANLNDHVIGQEQAKKALAVAVYNHYKRLRHPKASDNVELSKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 122 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 179 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + D +  D+  ++   G 
Sbjct: 224 ---------------------RKHP-----------------NQDFIQVDTTNILFVCGG 245

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 246 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADISELFEIVE--PED 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L++ EG  L+F + +
Sbjct: 290 LIKFGLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQALIRMEGAELEFEDAA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGD 425
           +  +A +A+   +     GAR L++++ER L +  +    L Q K V++ AE +      
Sbjct: 350 LRGIAKLAMTRKT-----GARGLRSIVERALLETMYLLPGLPQVKKVIVTAEVIDGKRPP 404

Query: 426 FPSETD 431
                D
Sbjct: 405 VLLTED 410


>gi|332141944|ref|YP_004427682.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551966|gb|AEA98684.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 424

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 170/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  KPTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 252

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  ++   +D+G G G + +              +S  +  +  + ++        
Sbjct: 253 AGLDKVIEQRAQKDTGIGFGATVKSKDNSKQ-------ISELFKQVEPEDLV-------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D
Sbjct: 298 ---KYGLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSMEDVELEFRDD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++A+A  A+   +     GAR L++++E VL D  +    + +   VVID   +R
Sbjct: 355 ALNAIAKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSMDDVSKVVIDETVIR 405


>gi|329908484|ref|ZP_08274874.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546711|gb|EGF31662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 422

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/415 (26%), Positives = 172/415 (41%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   L +Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQEICELLGQYVIGQDGAKRILSVAVYNHYKRLRHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V ++++  V    
Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQACNYDVEKAQKGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D V  D+  ++   G 
Sbjct: 218 -------GTMASVPPQGGRKHP--------------------NQDFVQIDTTNIMFICGG 250

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D   KIV+ R   +GIG S          +   S  S     +  +    I  G   
Sbjct: 251 AF-DGLAKIVSNRSEKSGIGFSA--------SVKSQSERSASEMLLEAEPEDLIKFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L +     IL + ++ LI QY  L++ EG  L+    
Sbjct: 299 ------LIPELVGRLPVVATLSELTEDAMIQILLEPKNALIKQYARLLQMEGAELEVRPA 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ F   + Q    VVID   +
Sbjct: 353 ALQAIARKALQRKT-----GARGLRSILEHALLDVMFELPNQQNVSKVVIDENTI 402


>gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
 gi|166214778|sp|A4G5X0|CLPX_HERAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|133738860|emb|CAL61907.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Herminiimonas
           arsenicoxydans]
          Length = 422

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 177/415 (42%), Gaps = 82/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+E+   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQELCELLDQYVIGQNSAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  +++  V    
Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D V  D+  ++   G 
Sbjct: 218 -------GTMASVPPQGGRKHP--------------------NQDFVQIDTTNIMFICGG 250

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D   KI++ R   +GIG S       +    E S+       ++T+    I  G   
Sbjct: 251 AF-DGLAKIISERSEKSGIGFSA-----TVKSREERSASQV---MLDTEPEDLIKFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     IL + ++ LI QY +L++ EG  L+    
Sbjct: 299 ------LIPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPA 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++ A+A  A+   +     GAR L++++E  L D+ +   + Q    VVID   +
Sbjct: 353 ALQAIAKKAIARKT-----GARGLRSILEHALLDVMYELPNEQNVSKVVIDEGTI 402


>gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114]
 gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Vibrio fischeri ES114]
          Length = 428

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 167/417 (40%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR I   LD Y+IGQ+ AK+ +A+A+ N ++R +     +D  EL   NILL+GPTG G
Sbjct: 69  TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR    PF   + T  TE GYVG +VE II+ L+        ++ R  V   
Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDPAKAERGIVY-- 186

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  +A               
Sbjct: 187 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG-------- 231

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 232 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 254

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G      + +       +++   +  I  + ++       
Sbjct: 255 FAGLDKVIEQRVATGTGIGFGADVRSKENE-------ATIGDLFKQIEPEDLVKF----- 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     IL+  ++ L  QY  L   EG  L+F E
Sbjct: 303 ------GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFRE 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A  A++  +     GAR L++++E VL +  +     +    VVID   + 
Sbjct: 357 DALKAIAKKAMDRKT-----GARGLRSILEAVLLETMYELPSKEGVSKVVIDESVIN 408


>gi|52081305|ref|YP_080096.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           licheniformis ATCC 14580]
 gi|52786684|ref|YP_092513.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           licheniformis ATCC 14580]
 gi|319647218|ref|ZP_08001440.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           BT1B_CT2]
 gi|81384902|sp|Q65GJ4|CLPX_BACLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52004516|gb|AAU24458.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus licheniformis ATCC 14580]
 gi|52349186|gb|AAU41820.1| ClpX [Bacillus licheniformis ATCC 14580]
 gi|317390565|gb|EFV71370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           BT1B_CT2]
          Length = 421

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 174/417 (41%), Gaps = 83/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPKEIREILDEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +    DL      S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGSDNKHEDLEKEALLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L+ L++     ILT  ++ L+ QY+++++ + + L F ++
Sbjct: 293 -----GLIPEFIGRLPIIASLEPLDEKALVEILTKPKNALVKQYRKMLELDDVELVFEDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  VI  + V  
Sbjct: 348 ALTEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCVITGKTVTD 399


>gi|77360985|ref|YP_340560.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875896|emb|CAI87117.1| ATPase, chaperone subunit of serine protease [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 427

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/414 (24%), Positives = 170/414 (41%), Gaps = 78/414 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY---- 185

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  +A                 
Sbjct: 186 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ------------ 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +        KI       +  L                            
Sbjct: 229 ---GGRKHPQQEFLQVDTSKILFICGGAFSGL---------------------------- 257

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                DK++ + S    G+   G   D+       S+S  +  +  + ++          
Sbjct: 258 -----DKVIEQRSHKNTGI---GFGVDVKESAASRSLSDTFKDVEPEDLV---------- 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++
Sbjct: 300 -KYGLIPEFIGRLPVVATLTELDEAALIQILSEPKNAITKQFSVLFGMEDVELEFRDDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E VL D  +    +     VVID   ++
Sbjct: 359 AAIAHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDNVSKVVIDETVIK 407


>gi|197302445|ref|ZP_03167500.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
 gi|197298343|gb|EDY32888.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC
           29176]
          Length = 423

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 172/414 (41%), Gaps = 79/414 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD+Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDQYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 124 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDI------------ 171

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S + S      G  
Sbjct: 172 -ERAEHGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 205 VQQALLKIIEGTVASVPPQGGRKHPHQE------------LIQIDT---TNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG + E   +                    D  + +       
Sbjct: 250 EGIDKI--IETRIDRKSIGFNAEIATKHEY-----------------DMDVLLQEALPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L  L++     ILT+ +S ++ QY++L++ +G+ L+F +D+
Sbjct: 291 LVKFGLIPELVGRLPVTVSLDLLDRDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +  +AD  +   +     GAR L+ +ME ++ D  F+   D   K   I  E V
Sbjct: 351 LLEIADTTLKRKT-----GARGLRAIMENIMMDTMFTVPSDETIKECRITKEAV 399


>gi|260913094|ref|ZP_05919576.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
 gi|260632681|gb|EEX50850.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
          Length = 412

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 173/418 (41%), Gaps = 80/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GK
Sbjct: 63  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKKIIDVELGKSNILLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ LV      V            
Sbjct: 123 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++   S + S      G  
Sbjct: 171 -ERAEKGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+               M  V    I  +     
Sbjct: 204 VQQALLKLIEGTVASIPPQGGRKHPQQE---------------MLRVDTSKILFICGGAF 248

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  +K V   SG G     +G Q         +++S  +  +  D ++        
Sbjct: 249 AGLDKVIEKRVHVGSGIGFSAEVKGKQDK-------ATLSQLFEQVEPDDLMKF------ 295

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     ILT+ ++ LI QY+ L   E + L+FT++
Sbjct: 296 -----GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFGLEDVALEFTQE 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLH 422
           ++ A+A  A+   +     GAR L++++E VL D  +    L   + V+++   +   
Sbjct: 351 ALIAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLVNLEKVLVEERTITEK 403


>gi|119510657|ref|ZP_01629786.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena
           CCY9414]
 gi|119464708|gb|EAW45616.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena
           CCY9414]
          Length = 444

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 107/430 (24%), Positives = 178/430 (41%), Gaps = 87/430 (20%)

Query: 3   LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-------QLPADLRDELMP 53
           L+FN    PREI + LD ++IGQ +AK+ +++A+ N ++R        +  AD   EL  
Sbjct: 74  LSFNQIPKPREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGKNEADDAVELQK 133

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   
Sbjct: 134 SNILLIGPTGCGKTLLAQTLATILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLD 193

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V E++R  +                                         EID +VA  S
Sbjct: 194 VEEAQRGII--------------------------------------YIDEID-KVARKS 214

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            + S      G  V    L  L   +     +   +   Q C                 +
Sbjct: 215 ENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------QI 259

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I  V     V LD+   +  R     +G  + G   DL    + ++ + +Y   + 
Sbjct: 260 DTSNILFVCGGAFVGLDKV--VDQRSGKKSMGFVQPG---DLQSKEKRTADTLRYLEPD- 313

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           D + F             ++PE  GR P+   +  L++     ILT   S L+ QY++L+
Sbjct: 314 DLVKF------------GMIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLL 361

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
             + + LDF +D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++    
Sbjct: 362 NMDNVQLDFKQDALRAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVSRC 416

Query: 413 VIDAEYVRLH 422
           ++  E V   
Sbjct: 417 MVTKEMVEKR 426


>gi|239995518|ref|ZP_04716042.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas
           macleodii ATCC 27126]
          Length = 424

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 172/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  KPSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 252

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  ++   +D+G G G + +              +S  +  +  + ++        
Sbjct: 253 AGLDKVIEQRAQKDTGIGFGATVKSKDNSKQ-------ISELFKQVEPEDLV-------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ LN+     IL + ++ +  QY  L   E + L+F +D
Sbjct: 298 ---KYGLIPEFIGRLPVVTSLEELNEEALIQILREPKNAITKQYGALFSMEDVELEFRDD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++A+A  A++  +     GAR L++++E VL D  +    +++   VVID   +R
Sbjct: 355 ALNAIAKKAMDRKT-----GARGLRSIVEAVLLDTMYDLPSMEDVSKVVIDETVIR 405


>gi|332703912|ref|ZP_08424000.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554061|gb|EGJ51105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 415

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 169/424 (39%), Gaps = 81/424 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGV 64
            +P+EI  +LD ++IGQ+ AK+ +++A+ N ++R      A    E+   NILL+GPTG 
Sbjct: 61  LTPQEIKDQLDEHVIGQEQAKKVLSVAVHNHYKRVYYADTAGEDVEIDKSNILLLGPTGC 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R  V  
Sbjct: 121 GKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAASRGIVY- 179

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E                    
Sbjct: 180 ------IDEIDKIARKGDSPSITRDVSGEGVQQALLKIIE-------------------- 213

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + +   G +K  +                       ++  +I  +   
Sbjct: 214 ---------GTDANIPPKGGRKHPQQEFI------------------RLNTSNILFIMGG 246

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             + LD+   I  R  G  +G   +   +  L + E                  +     
Sbjct: 247 AFIGLDKI--IQQRMRGGAMGFGAKVEGKRELSISE-----------------LLRFAHP 287

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           +      ++PE  GR PV   L  L + D   +LT+ ++ L+ QY++L + + + L FT 
Sbjct: 288 NDLVKFGMIPEFVGRVPVVTSLIDLGEDDLVRVLTEPKNALVKQYQKLFELDKVRLRFTA 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++  +A  A+   +     GAR L+ VME ++ +I F    +   K  VI+   V   +
Sbjct: 348 NALRGIAQQAILRKT-----GARGLRNVMESIMLEIMFRLPSMTGVKECVINKSVVEKGV 402

Query: 424 GDFP 427
               
Sbjct: 403 DPLL 406


>gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium
           sp. Marseille]
 gi|166214779|sp|A6SY75|CLPX_JANMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151280777|gb|ABR89187.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Janthinobacterium sp. Marseille]
          Length = 422

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 109/416 (26%), Positives = 177/416 (42%), Gaps = 82/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+E+   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQELCELLDQYVIGQNPAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  +++  V    
Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D V  D+  ++   G 
Sbjct: 218 -------GTMASVPPQGGRKHP--------------------NQDFVQIDTTNIMFICGG 250

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D   KI++ R   +GIG S       +    E ++       ++T+    I  G   
Sbjct: 251 AF-DGLAKIISERSEKSGIGFSA-----SVKSREERTASQV---MMDTEPEDLIKFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L+ L++     IL + ++ LI QY +L++ EG  L+    
Sbjct: 299 ------LIPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPA 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E  L D+ F   + Q    VVID   + 
Sbjct: 353 ALQAIAKKAIARKT-----GARGLRSILEHALLDVMFELPNEQNVAKVVIDEGTIN 403


>gi|119487887|ref|ZP_01621384.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
 gi|119455463|gb|EAW36601.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106]
          Length = 449

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 107/431 (24%), Positives = 176/431 (40%), Gaps = 82/431 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELM 52
            L     P +I   LD ++IGQ DAK+ +++A+ N ++R  L           D   EL 
Sbjct: 73  SLQHIPKPTDIKQYLDDHVIGQHDAKKVLSVAVYNHYKRLSLDRSSLSGNLNLDDGVELQ 132

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NI+LVGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA  
Sbjct: 133 KSNIMLVGPTGCGKTLLAQTLAKQLDVPFAVADATTLTEAGYVGDDVENILLRLLQVADF 192

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +  ++R  +         + I         TS TR+V  + ++   +   E  I     
Sbjct: 193 DIEAAQRGIIY-------IDEIDKISRKSENTSITRDVSGEGVQQALLKILEGTI----- 240

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                N    GG      +  E+           KI       +  L +      +    
Sbjct: 241 ----VNVPPQGGRKHPYQDFIEI--------DTSKILFICGGAFVGLEK------VIEQR 282

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + + S+                I + ++ N   V     Q +LL  VE   +  K+G   
Sbjct: 283 LGKKSLGF--------------IQSSETANNAAVKSVQRQDELLQYVEPDDL-VKFG--- 324

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GR PV   +  L++     ILT+ ++ LI QYK+L
Sbjct: 325 -------------------LIPEFVGRIPVVTVISPLDEEALMRILTEPQNALIKQYKKL 365

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
           +K + + L+F +D++ A+A  A    +     GAR L+ ++E ++ D+ +     Q+   
Sbjct: 366 LKMDNVNLEFEQDAMIAIAAEAYRRKT-----GARALRGILEELMLDVMYELPSRQDVVR 420

Query: 412 VVIDAEYVRLH 422
            +I  E V   
Sbjct: 421 CIITQEMVEKR 431


>gi|255019391|ref|ZP_05291500.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Acidithiobacillus caldus ATCC 51756]
 gi|254971163|gb|EET28616.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Acidithiobacillus caldus ATCC 51756]
          Length = 427

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 102/406 (25%), Positives = 167/406 (41%), Gaps = 81/406 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPTG 63
            P EI   LD Y+IGQ  AK+ +++A+ N ++R +       D   EL   NILL+GPTG
Sbjct: 66  KPMEIRKTLDEYVIGQDAAKKVLSVAVYNHYKRLEHGGKGGRDNDVELDKSNILLIGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V 
Sbjct: 126 SGKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVY 185

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 186 -------IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQ-------- 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                     +   +       + I       +  L +  + R              VE 
Sbjct: 229 -------GGRKHPQQEFLQVDTRHILFICGGAFAGLEKAVASR--------------VEK 267

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            G+ F     +I   D  N   +  E ++ + L          +YG              
Sbjct: 268 GGMGFNA---QIKRTDKQNSSNLMMENLEPEDL---------VRYG-------------- 301

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L++     ILT+  ++L+ QY++L   EG+ L+F 
Sbjct: 302 --------LIPEFVGRLPVIALLEELDEDALVSILTEPRNSLVKQYQKLFALEGVTLEFR 353

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +++ A+A  A+   +     GAR L++++E++L D  +    L  
Sbjct: 354 PEALRAIAKKALTRKT-----GARGLRSILEQILLDSMYELPSLVG 394


>gi|119473284|ref|ZP_01614936.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
 gi|119444507|gb|EAW25827.1| ATP-dependent protease ATP-binding subunit [Alteromonadales
           bacterium TW-7]
          Length = 427

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 171/414 (41%), Gaps = 78/414 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+ +++A+ N ++R +  +  +D EL   NILL+GPTG GKT
Sbjct: 70  PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY---- 185

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  +A                 
Sbjct: 186 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ------------ 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +        KI       +  L                            
Sbjct: 229 ---GGRKHPQQEFLQVDTSKILFICGGAFSGL---------------------------- 257

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                DK++ + S    G+   G    +    E  S+S  +  +  + ++          
Sbjct: 258 -----DKVIEQRSHKNTGI---GFGVSVKESAETRSLSETFKDVEPEDLV---------- 299

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    IL++ ++ +  Q+  L   E + L+F +D++
Sbjct: 300 -KYGLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            A+A  A+   +     GAR L++++E +L D  +    + +   VVID   ++
Sbjct: 359 SAIAHKAMVRKT-----GARGLRSIVEGILLDTMYELPSMDDVSKVVIDETVIK 407


>gi|83592886|ref|YP_426638.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum
           rubrum ATCC 11170]
 gi|123739541|sp|Q2RU44|CLPX_RHORT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83575800|gb|ABC22351.1| ClpX, ATPase regulatory subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 422

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 158/406 (38%), Gaps = 89/406 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP++I+  LD Y+IGQQ AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  SPKDILKVLDDYVIGQQHAKKVLSVAVHNHYKRLSQAGKNSDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I AR  G+ IG               G+ V         D            
Sbjct: 251 AGLDRI--ISARGKGSSIGF--------------GADVR--------DPEARRTGEVLRA 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L 
Sbjct: 287 VEPEDLLKYGLIPEFVGRLPVLATLDDLDEDALVDILTTPKNALVKQYQRLFEMESTQLS 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           F ED++  +A  A+   +     GAR L+++ME +L D  F    +
Sbjct: 347 FKEDALRCIALKAIARKT-----GARGLRSIMEGILLDTMFDLPGM 387


>gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
 gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           SK209-2-6]
          Length = 422

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 166/415 (40%), Gaps = 81/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           SP++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  SPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD    I  R  G+ +G   +    D   + E           + +    +  G   
Sbjct: 251 FAGLDRI--IAQRGKGSAMGFGADVRDNDDRGVGE--------IFQDLEPEDLLKFG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFT +
Sbjct: 298 ------LIPEFVGRLPVLATLEDLDEDALVTILTLPKNALVKQYQRLFELEETELDFTPE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           ++ A+A  A+   +     GAR L+++ME +L D  F    +   T VV++ E V
Sbjct: 352 ALKAIAKKAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVTKVVVNEEAV 401


>gi|163736127|ref|ZP_02143546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
 gi|161389997|gb|EDQ14347.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter
           gallaeciensis BS107]
          Length = 422

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/427 (24%), Positives = 167/427 (39%), Gaps = 81/427 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+  K   + S  G G                + V   +  +  + +L        
Sbjct: 251 FAGLDKIIKQRGKGSAMGFGADVRDD--------SDAGVGETFKDLEPEDLLKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   LDFTE+
Sbjct: 297 -----GLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++A  A+   +     GAR L++++E +L +  F    +   + VV++ E V     
Sbjct: 352 ALSSIAKKAIERKT-----GARGLRSILEDILLNTMFELPGMDSVEKVVVNEEAVNSDAQ 406

Query: 425 DFPSETD 431
                 D
Sbjct: 407 PLMIHAD 413


>gi|317486005|ref|ZP_07944860.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6]
 gi|316922778|gb|EFV44009.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6]
          Length = 418

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 172/421 (40%), Gaps = 83/421 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPT 62
            +P+EI + LD Y+IGQ +AK+ +A+A+ N ++R         D   EL   NILLVGP+
Sbjct: 61  LTPQEIKARLDEYVIGQDEAKKILAVAVHNHYKRVFYADALKGDDGVELEKSNILLVGPS 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  +     
Sbjct: 121 GSGKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDLEAA----- 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                            R G I   EID +++  +   S     
Sbjct: 176 ---------------------------------RKGIIYIDEID-KISRKADGPSITRDV 201

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +         K   +   Q+             I MDT +     ++ 
Sbjct: 202 SGEGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDTSN-----ILF 244

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F+   DKIV +    G              +  G+ V TK     T   L     
Sbjct: 245 IVGGAFIG-LDKIVEQRMRGG-------------SMGFGAKVETK--KERTLGELLEQVH 288

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
              + +   L+PE  GR PV  H+  L + D   ILT+ ++ L  QY++L + + + L F
Sbjct: 289 PADLVQ-FGLIPEFVGRIPVLTHVDDLGEDDLVRILTEPKNALTRQYQKLFELDNVTLRF 347

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           T D++ A+A  A+   +     GAR L+ VME V+ DI +    +   K  VI+   +  
Sbjct: 348 TSDALRAIAHRAIERKT-----GARGLRNVMESVMLDIMYQLPSMPGVKECVINDAVIEK 402

Query: 422 H 422
            
Sbjct: 403 K 403


>gi|229105111|ref|ZP_04235762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-28]
 gi|228678292|gb|EEL32518.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-28]
          Length = 444

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 422


>gi|261868694|ref|YP_003256616.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414026|gb|ACX83397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 413

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 173/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  A++ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 64  TPHQIRAHLDDYVIGQDYAQKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+      +  + +  +    
Sbjct: 124 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIERAEQGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M      KI       +  L     D++I+     R S+     +G 
Sbjct: 224 ----GGRKHPQQEMLRIDTSKILFICGGAFAGL-----DKVIE----KRTSVATAIGFGA 270

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               E DK                           ++++  +  +  D ++         
Sbjct: 271 EIKSEKDK---------------------------ATLTDLFKQVEPDDLM--------- 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT ++
Sbjct: 295 --KYGLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E VL D  +    L+  K VV++   +  +
Sbjct: 353 LTAMAKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDN 404


>gi|218295536|ref|ZP_03496349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           aquaticus Y51MC23]
 gi|218244168|gb|EED10694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           aquaticus Y51MC23]
          Length = 396

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 173/421 (41%), Gaps = 88/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI + LD Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT
Sbjct: 57  KPQEIKAHLDGYVVGQEAAKRALSVAVYNHYKRLLHPE---AEIGKSNILLIGPTGTGKT 113

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LAR    PF   + T  TE GYVG +VE +I  L+  A   V  +    V     
Sbjct: 114 LLAETLARFLEVPFAIADATTLTEAGYVGEDVENVILRLLQNADFDVARAEMGIVY---- 169

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +    I+  +A+                
Sbjct: 170 ---IDEIDKIARKSENPSLTRDVSGEGVQQALLKI--IEGTIANVPPQGG---------- 214

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+  P               V+  +I  +      
Sbjct: 215 --------------------RKHPHQEFIP---------------VNTKNILFILGGAFE 239

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L+   K  AR     IG +R   + + + ++    V  K+G                  
Sbjct: 240 GLENIVK--ARTERTTIGFTRPRAKEEPMEVIPEDLV--KFG------------------ 277

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR P+ V L  L + D   ILT+ ++ L+ QY+ L++ EGI L FT+ ++
Sbjct: 278 ----LIPEFVGRAPLIVQLHPLGEEDLVRILTEPKNALVKQYQALLRMEGIELRFTQAAL 333

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
             +A  A+   +     GAR L+ ++E+ + D+ F A     + +VID  ++   +    
Sbjct: 334 REIARRALKRGT-----GARGLRAILEKTMVDLMFEAPGSGVREIVIDLPHLDQPLKALE 388

Query: 428 S 428
            
Sbjct: 389 E 389


>gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
 gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           22.1-21]
          Length = 396

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 164/404 (40%), Gaps = 79/404 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +   +  D EL   NILL+GPTG GK
Sbjct: 64  TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE +++ L+        ++ +  +    
Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKAEKGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 181 ----IDEIDKISRKSEGASITRDVSGEGVQQALL--KLIEGTIASIPPQGG--------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+               M  +    I  +     
Sbjct: 226 ---------------------RKHPQQE---------------MVKLDTSKILFICGGAF 249

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  DK     +  G   + E  ++         S+S  +  +  D ++        
Sbjct: 250 AGLDKIIDKRTQTSTSIGFNATVEKDEKQQ-------SLSELFRQVEPDDLMKF------ 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L++     ILT  ++ LI QY+ L   E + LDFT +
Sbjct: 297 -----GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++ A+A  A+   +     GAR L++++E VL D  +    L+ 
Sbjct: 352 ALKAMAKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLEN 390


>gi|30248063|ref|NP_840133.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea
           ATCC 19718]
 gi|46576514|sp|Q82Y56|CLPX_NITEU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|30179948|emb|CAD83943.1| clpX; ATP-dependent protease (ATP-binding specificity subunit)
           [Nitrosomonas europaea ATCC 19718]
          Length = 426

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 182/437 (41%), Gaps = 88/437 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTG 63
           +P EI   LD+Y+IGQ+ AK+ +++A+ N ++R +           EL   NILL+GPTG
Sbjct: 65  TPHEIRETLDQYVIGQESAKKILSVAVYNHYKRLKNLSKVNNGDDVELSKSNILLIGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+    + V +++R  V 
Sbjct: 125 SGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQKCNHDVEKAQRGIVY 184

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  +                              
Sbjct: 185 -------IDEIDKISRKSDNPSITRDVSGE------------------------------ 207

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G    +L L E  + ++     +K                     + + +  D+  ++  
Sbjct: 208 GVQQALLKLIEGTTALVPPQGGRKHP-------------------NQEFIQIDTTNILFI 248

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
            G  F D  DKI+  R   +GIG   + + ++    +            + +    I  G
Sbjct: 249 CGGAF-DGIDKIIRGRSEKSGIGFGADVINQNDRKELNK-------ILKDIEPEDLIKYG 300

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILD 361
                    L+PE  GR PV   L  LN++    IL + ++ LI QY +L   E G+ L+
Sbjct: 301 ---------LIPEFVGRLPVVATLSELNEAALIQILVEPKNALIKQYNKLFSMEGGVELE 351

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F E ++ A+A  A++  +     GAR L++++E  L DI +    ++    VVI++    
Sbjct: 352 FREQALVAIARKALSRKT-----GARGLRSILEETLLDIMYDLPSIENVSKVVIESGSNH 406

Query: 421 LHIGDFP---SETDMYH 434
             +        +  +  
Sbjct: 407 DELQPIVIYAEKPKLAR 423


>gi|298491693|ref|YP_003721870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc
           azollae' 0708]
 gi|298233611|gb|ADI64747.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc
           azollae' 0708]
          Length = 446

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 172/430 (40%), Gaps = 97/430 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------QLPADLRDELMPKNILL 58
            PREI   LD ++IGQ +AK+ +++A+ N ++R          +  AD   E+   NILL
Sbjct: 81  KPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGNGKGGADDAVEIQKSNILL 140

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 141 MGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 200

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++      +                
Sbjct: 201 RGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQ 260

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            D SN     G +   L                                  ++++D   V
Sbjct: 261 IDTSNILFICGGAFVGL----------------------------------EKVVDQ-RV 285

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + SI  V+                   +G G S+E    D L  +E   +  K+G I  
Sbjct: 286 GKKSIGFVQ-------------------SGEGQSKEKRAADTLRHLEPDDL-VKFGMI-- 323

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                               PE  GR P+   +  L++     ILT   S L+ QY++L+
Sbjct: 324 --------------------PEFIGRMPMVAVVDPLDEEALMAILTQPRSALVKQYQKLL 363

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-V 412
           K + + LDF  +++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ T  
Sbjct: 364 KMDNVQLDFKPEALRAIAQEAHRRKT-----GARALRGIVEELMLDVMYELPSRKDVTRC 418

Query: 413 VIDAEYVRLH 422
            +  E V   
Sbjct: 419 TVTREMVEKR 428


>gi|332529293|ref|ZP_08405255.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
 gi|332041210|gb|EGI77574.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella
           gracilis ATCC 19624]
          Length = 421

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 173/424 (40%), Gaps = 92/424 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---DELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ  AKR +A+A+ N ++R Q     R    EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDNYVIGQDAAKRTLAVAVYNHYKRLQHKETARKDEVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE II  L+      V +++R  V  
Sbjct: 127 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIAKLLQNCNYEVEKAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG               G++V +K     T   L   +  F
Sbjct: 251 GGAFAGLEKVIERRTESSGIGF--------------GAAVKSK-----TQRSL---TEVF 288

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ QY +L   EG+ 
Sbjct: 289 KEVEPEDLIKYGLIPELVGRMPVVATLAELSEDALVQILTEPKNALVKQYAKLFGMEGVE 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+    ++ A+A  ++   +     GAR L+++ME+ L D  F    L   + VV+D   
Sbjct: 349 LEIRPTALAAIAKKSLARKT-----GARGLRSIMEQSLIDTMFDLPTLSNVEKVVVDEST 403

Query: 419 VRLH 422
           +  H
Sbjct: 404 IEEH 407


>gi|282860205|ref|ZP_06269279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           bivia JCVIHMP010]
 gi|282587026|gb|EFB92257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           bivia JCVIHMP010]
          Length = 411

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 107/419 (25%), Positives = 170/419 (40%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ +AKR +++++ N ++R Q    D   E+   NI++VG TG GK
Sbjct: 63  KPQEIKQYLDEYIIGQDEAKRYLSVSVYNHYKRLQQEKGDDGVEIEKSNIIMVGSTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 123 TLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 179 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + +L    M +   K  R                   D D +H D+  ++   G 
Sbjct: 203 GVQQGMLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTKNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                     D    +       
Sbjct: 247 AFDGIERKIAQRLNTHVVGYNS--VQNVA----------------KIDKKDLMKYVLPQD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L+K   R IL   +++++ QY +L   +GI L FTE++
Sbjct: 289 LKSFGLIPEIIGRLPVLTYLNPLDKEALRRILVQPKNSIVKQYIKLFAMDGIKLSFTEEA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     +  +  +  +Y    +  
Sbjct: 349 LDYIVDKAVEYK-----LGARGLRSIVESVMMDAMFEIPSQKLTSFEVTKDYAVAQLDK 402


>gi|332305575|ref|YP_004433426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172904|gb|AEE22158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 425

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/415 (26%), Positives = 175/415 (42%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHDGVELGKSNILLMGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+         +     GI
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQ--------RAHTGTGI 269

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  +        S+EG   +LL  VE   +  KYG                 
Sbjct: 270 GFGSAIKDISNK--------SKEG---ELLKKVEPEDL-VKYG----------------- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + +++L  QY  L   E   L+F +D+
Sbjct: 301 -----LIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFRDDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E VL D  +    +     VV+D   +R
Sbjct: 356 LQAIAKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405


>gi|71281243|ref|YP_270451.1| ATP-dependent protease ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
 gi|123631419|sp|Q47XL9|CLPX_COLP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71146983|gb|AAZ27456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Colwellia
           psychrerythraea 34H]
          Length = 424

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 167/422 (39%), Gaps = 78/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP EI   LD Y+IGQ  AK+ +A+A+ N ++R +   +    EL   NILL+GPTG GK
Sbjct: 67  SPIEIRESLDEYVIGQDHAKKVLAVAVYNHYKRLRNGDNHNGIELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAQTLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 255

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK+V + +  G G+      R     +  +         + +    +  G    
Sbjct: 256 ------DKVVEQRNHTGTGIGFGAEVRGKDQEISLTD-----RLADVEPQDLVKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    IL + ++ L  Q+  L   E + L+F  D+
Sbjct: 301 -----LIPEFIGRLPVLATLRELDEAALIQILQEPKNALTKQFTALFDMENVELEFRSDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A++  +     GAR L++++E VL D  +    ++    +V+D   ++     
Sbjct: 356 LHAIARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSMENVSKIVVDENTIKGESKP 410

Query: 426 FP 427
             
Sbjct: 411 IV 412


>gi|212704617|ref|ZP_03312745.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
 gi|212672016|gb|EEB32499.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098]
          Length = 425

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 176/418 (42%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            SP+EI + LD Y+IGQ +AK+ +++A+ N ++R      L D  EL   NILLVGP+G 
Sbjct: 64  LSPQEIKARLDEYVIGQTEAKKILSVAVHNHYKRVFFADALGDDVELEKSNILLVGPSGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +          
Sbjct: 124 GKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDI---------- 173

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                A + I+                            EID +++  S   S      G
Sbjct: 174 ---EAASKGII-------------------------YIDEID-KISRKSDGPSITRDVSG 204

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +         K   +   Q+             I MDT    +I  +   
Sbjct: 205 EGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDT---SNILFIVGG 249

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD+   + +R SG+ +G   +   +  +PL E                  +     
Sbjct: 250 AFVGLDKI--VGSRMSGSSMGFGAQVCSKKEMPLGE-----------------LLEKIQP 290

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+  H+  L+++D   ILT+ ++ L+ QY++L + + + L FT 
Sbjct: 291 QDLVKFGLIPEFVGRIPIITHVDDLDEADLVRILTEPKNALVRQYQKLFELDHVQLRFTP 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++ A+A  A+   +     GAR L+ VMER + DI F    +   K  +I+   +  
Sbjct: 351 NALKAIAARAIERKT-----GARGLRNVMERTMLDIMFRLPSMPGVKECLINRAVIEK 403


>gi|217967476|ref|YP_002352982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           turgidum DSM 6724]
 gi|226706585|sp|B8E291|CLPX_DICTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|217336575|gb|ACK42368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           turgidum DSM 6724]
          Length = 411

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 175/417 (41%), Gaps = 86/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + + +    E+   N+LL+GPTGVG
Sbjct: 60  KPHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMRSKITEDVEIQKSNVLLIGPTGVG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LA+    PF   + T  TE GYVG +VE I+  L+  A   ++ + +  V   
Sbjct: 120 KTLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNADWDIKRAEKGIVY-- 177

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  + ++  +A+              
Sbjct: 178 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--RIVEGTIANVPPQGG-------- 222

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  ++   I  +    
Sbjct: 223 ----------------------RKHPYQEFI---------------QINTKDILFIAGGS 245

Query: 246 IVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
               +  +KIV +    S  G G   E   R  L  +    +         D I F    
Sbjct: 246 F---EGIEKIVEKRLDVSNIGFGAQIEPKNRKSLTQILNHIIP-------EDLIKF---- 291

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    ++PE  GRFPV   L+ L++     ILT+ ++ L+ QYK L+  EG+ ++F
Sbjct: 292 --------GMIPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSMEGVEINF 343

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           T++++ A+   A++  +     GAR L+ VME ++ D+ +   +L  K   +  E V
Sbjct: 344 TDEALKAIVKEAIDKAT-----GARGLRAVMEELMLDLMYELPNLGIKKFTVTPELV 395


>gi|114330231|ref|YP_746453.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha
           C91]
 gi|122314710|sp|Q0AJI3|CLPX_NITEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114307245|gb|ABI58488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosomonas
           eutropha C91]
          Length = 427

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 182/438 (41%), Gaps = 89/438 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPT 62
           +P EI   LD+Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 65  TPHEICETLDQYVIGQESAKKILSVAVYNHYKRLRNLSKVNAGSDDIELAKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+  + + V +++R  V
Sbjct: 125 GSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQASNHDVEKAQRGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  +                             
Sbjct: 185 Y-------IDEIDKISRKSDNPSITRDVSGE----------------------------- 208

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G    +L L E  + ++     +K                     + + +  D+  ++ 
Sbjct: 209 -GVQQALLKLIEGTAALVPPQGGRKHP-------------------NQEFIQVDTTNILF 248

Query: 243 NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             G  F D  DKI+  R   +GIG   + + ++    +            + +    I  
Sbjct: 249 ICGGAF-DGIDKIIRARSEKSGIGFGADVINQNDRKELNK-------ILGDIEPEDLIKY 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIIL 360
           G         L+PE  GR PV   L+ LN++    IL + ++ L+ QY +L   E G+ L
Sbjct: 301 G---------LIPEFIGRLPVVATLRELNEAALIQILIEPKNALVKQYSKLFSMEGGVEL 351

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +F E ++  +A  A+   +     GAR L++++E  L DI +    ++    VVI++   
Sbjct: 352 EFREQALVTIARKALARKT-----GARGLRSILEETLLDIMYDLPSIKNVSKVVIESSST 406

Query: 420 RLHIGDF---PSETDMYH 434
              +        +  +  
Sbjct: 407 NDDLQPIIIYAEKPKLAR 424


>gi|229032126|ref|ZP_04188103.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1271]
 gi|228729182|gb|EEL80181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1271]
          Length = 444

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 422


>gi|254421934|ref|ZP_05035652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7335]
 gi|196189423|gb|EDX84387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. PCC 7335]
          Length = 443

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 178/433 (41%), Gaps = 93/433 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKN 55
           + L     PREI S LD ++IGQ +AK+ +++A+ N ++R  + A+  +     EL   N
Sbjct: 75  LSLGQIPKPREIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSVQAEGEEAEDDIELQKSN 134

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA   V 
Sbjct: 135 ILLIGPTGCGKTLLAQTLAAILEVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVE 194

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           E++R  +                                         EID ++A  S +
Sbjct: 195 EAQRGII--------------------------------------YIDEID-KIARKSEN 215

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            S      G  V    L  L   V     +   +   Q C                 +  
Sbjct: 216 PSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDT 260

Query: 236 DSIQMVENYGIVFLDEF--DKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +I  V     V LD+    +I  +  G    G  ++ +      L  +E   +  K+G 
Sbjct: 261 RNILFVCGGAFVGLDKIVEQRIGKKSMGFVQPGREINSDAKSSLTLQDLEPDDI-VKFG- 318

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                                ++PE  GR P    ++ L++     ILT+ ++ L+ Q+K
Sbjct: 319 ---------------------IIPEFIGRIPAVSIVEPLDEKTLVAILTEPKNALVKQFK 357

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
           +LM+ + + L+F  D+I A+A  A N  +     GAR L++++E ++ D+ +      + 
Sbjct: 358 KLMRMDDVELEFEPDAIRAIAKEAFNRKT-----GARALRSIIEEIMLDVMYELPSRDDV 412

Query: 410 KTVVIDAEYVRLH 422
           KT  I  E V   
Sbjct: 413 KTCTITREMVENR 425


>gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
 gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
          Length = 423

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 159/402 (39%), Gaps = 77/402 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +    +   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKRLRNGDTNNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L                           
Sbjct: 226 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL--------------------------- 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                 DK++++      G+              G S + K  S        +A      
Sbjct: 255 ------DKVISQRLNVSSGI--------------GFSATVKGESEKATEGELLAQAEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG  L+F +++
Sbjct: 295 LIKFGLIPEFIGRLPVVATLTELSEDALIQILQEPKNALTKQYQALFNLEGAELEFRKEA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           + A+A  A+   +     GAR L++++E VL D  +    ++
Sbjct: 355 LTAIAKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSME 391


>gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
 gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi
           HTCC2506]
          Length = 422

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 169/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI++ LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILL+GPTG GK
Sbjct: 65  SPQEIIAVLDDYVIGQAYAKKVLSVAVHNHYKRLAHASKNNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD    I  R     IG +      D     E       +  +  + +L         
Sbjct: 251 AGLDRI--ISDRGRKTSIGFAANVEAPDERKSGE------LFRQVEPEDLLKF------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    IL + ++ L+ QY+ L + E + L F ED+
Sbjct: 296 ----GLIPEFVGRLPVLATLEDLDEAALVQILREPKNALVKQYQRLFEMESVQLTFQEDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A+   +     GAR L+++ME +L D  F    L+  + VV+  + +
Sbjct: 352 LGAIARKAIERKT-----GARGLRSIMEAMLLDTMFDLPTLEGVQEVVVSDDVI 400


>gi|302528950|ref|ZP_07281292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. AA4]
 gi|302437845|gb|EFL09661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. AA4]
          Length = 431

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 175/438 (39%), Gaps = 97/438 (22%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--------LPADLRDELM 52
           +KL     P +I   L++YIIGQ DAK+ +A+A+ N ++R Q           D   EL 
Sbjct: 56  VKLDELPKPADIHEFLEQYIIGQDDAKKTLAVAVYNHYKRIQADDKSGPKDSKDEPVELA 115

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NIL++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A  
Sbjct: 116 KSNILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADY 175

Query: 113 IVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+ +       DEV + A                  S TR+V  + ++   +   E   
Sbjct: 176 DVKRAETGIIYIDEVDKIARK------------SENPSITRDVSGEGVQQALLKILEGT- 222

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               +         P    + I   + LF               V   +  L +      
Sbjct: 223 --TASVPPQGGRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEK------ 260

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           I  + V +  +                I  +    G  V  E +  DL+           
Sbjct: 261 IINERVGKRGLGFGAE-----------IRTKAEIEGSDVFSETMPEDLIKF--------- 300

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GR PV   +  L+K     ILT   + L+ 
Sbjct: 301 -----------------------GLIPEFIGRLPVVATVNHLDKESLVSILTQPRNALVK 337

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK+L + + + L+FT+ +++A+AD AV   +     GAR L+ +ME VL+ + +     
Sbjct: 338 QYKKLFEMDNVELEFTKTALEAIADQAVLRGT-----GARGLRAIMEEVLQPVMYDIPSR 392

Query: 408 QEK-TVVIDAEYVRLHIG 424
           ++   VVI  + VR ++ 
Sbjct: 393 EDVAKVVITEQTVRENVN 410


>gi|53802552|ref|YP_112778.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|61211760|sp|Q60C67|CLPX1_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1
 gi|53756313|gb|AAU90604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 422

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 102/415 (24%), Positives = 170/415 (40%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+E+ + LD+Y+IGQ  AKR +++A+ N ++R +      D EL   N+LL+GPTG GK
Sbjct: 66  KPKEMKAILDQYVIGQDKAKRILSVAVYNHYKRLKARTFRNDVELAKSNVLLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ +  V    
Sbjct: 126 TLLAETLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLLACDYDVEKAEQGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        + S TR+V  + ++   +   E  +                   
Sbjct: 183 ----IDEIDKISRKADSPSITRDVSGEGVQQALLKLMEGTVASVPPQGG----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V+  +I  +     
Sbjct: 228 ---------------------RKHPQQEFL---------------QVNTANILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I +R   +GIG S E                 K    NT+    +A      
Sbjct: 252 AGLDK--TIRSRSERSGIGFSAE----------------VKSKEENTNVGEILAGVEAED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    IL + ++ L+ QY  L + EG  L+   ++
Sbjct: 294 LIRYGLIPEFIGRLPVVATLEELDEAALVRILIEPKNALVKQYARLFEMEGCELEILPEA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A+   +     GAR L+T++E  L D  +     ++   VV+DA+ +R
Sbjct: 354 LGAIARRAMERKT-----GARGLRTIIEHALLDTMYELPSAEDVGKVVVDAKVIR 403


>gi|293391573|ref|ZP_06635907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952107|gb|EFE02226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 410

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 173/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I + LD Y+IGQ  AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 61  TPHQIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +AR+   PF   + T  TE GYVG +VE +++ L+      +  + +  +    
Sbjct: 121 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCDYDIERAEQGIIY--- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 178 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTIASIPPQ----------- 220

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M      KI       +  L     D++I+     R S+     +G 
Sbjct: 221 ----GGRKHPQQEMLRIDTSKILFICGGAFAGL-----DKVIE----KRTSVATAIGFGA 267

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               E DK                           ++++  +  +  D ++         
Sbjct: 268 EIKSEKDK---------------------------ATLTDLFKQVEPDDLM--------- 291

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E + L+FT ++
Sbjct: 292 --KYGLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E VL D  +    L+  K VV++   +  +
Sbjct: 350 LTAMAKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVINDN 401


>gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 415

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 171/415 (41%), Gaps = 79/415 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 62  LKPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELHKSNILMLGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   ++ +    +    
Sbjct: 122 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIQRAEYGIIY--- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I                   
Sbjct: 179 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTIASVPPQGG----------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+            LI +DT    +I  +     
Sbjct: 224 ---------------------RKHPHQE------------LIQIDT---TNILFICGGAF 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG + E  ++                  + D +L         
Sbjct: 248 EGIDKI--IETRIDKKSIGFNAEIAEKHEY---------------DIDRLLGQV--LPQD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F +++
Sbjct: 289 LVKFGLIPELVGRVPVTVSLEMLDEEALIRILTEPKSAIVKQYQKLLELDGVELVFDKEA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +  +A  ++   +     GAR L+ +ME+++ D  +    D   K   I  E V+
Sbjct: 349 LVEIAKTSLARKT-----GARGLRAIMEKIMMDTMYHVPSDDSIKYCRITKEVVQ 398


>gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 439

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 175/417 (41%), Gaps = 81/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ +AK+ +++A+ N ++R     ++  ++   NIL+VGPTG GK
Sbjct: 68  LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTSCQNMDVDVQKSNILMVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  +    +    
Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQSADYDISRAEYGII---- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S ++S      G  
Sbjct: 184 ----------------------------------YIDEID-KITKKSENVSITRDVSGEG 208

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+            L+ +DT +     ++   G 
Sbjct: 209 VQQALLKILEGTVASVPPQGGRKHPHQE------------LLQIDTTN-----ILFICGG 251

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KIV  R S   IG + E V ++                 + D    +      
Sbjct: 252 AF-DGLEKIVEQRISAGSIGFNAEVVNKN-----------------DNDIDDLLRKVEPK 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V L+SL K     IL++ ++ L  QY++L + + + L+FT +
Sbjct: 294 DLTKFGLIPEFIGRVPVMVSLQSLTKDAMVRILSEPKNALTRQYQKLFELDNVKLEFTRE 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           ++D +A +AV+       IGAR L++++E V+ D+ +    D       I    V  
Sbjct: 354 ALDEIAQLAVDRK-----IGARGLRSILETVMMDLMYEIPSDDTIGICTITKGVVDK 405


>gi|88810608|ref|ZP_01125865.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
 gi|88792238|gb|EAR23348.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
          Length = 425

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 171/414 (41%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ+ AK+ +++A+ N ++R +   +    EL   NILL+GPTG GK
Sbjct: 68  KPHEIKTVLDDYVIGQEQAKKVLSVAVYNHYKRMEASHSKSEVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V    
Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 185 ----IDEIDKISRKADNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 229

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V+  +I  +     
Sbjct: 230 ---------------------RKHPQQEFL---------------QVNTGNILFICGGAF 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R    GIG S E   R+    +  S         + +    I  G    
Sbjct: 254 AGLEKI--IQQRSERGGIGFSAEIKGREQRKSIGDSLR-------DVEPEDLIRYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL + ++ L+ QY++L   EG  L+F ED+
Sbjct: 301 -----LIPEFVGRMPVVATLTELDEEALMRILIEPKNALVKQYQKLFTMEGAALEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           +  +A  A+   +     GAR L+T++ERVL D  +    ++    VV+D   +
Sbjct: 356 LRGVARNAMERKT-----GARGLRTLIERVLLDTMYELPSMEHVSKVVVDESVI 404


>gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 428

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 168/426 (39%), Gaps = 82/426 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
           +P EI   LD Y+IGQ++AK+ +A+A+ N ++R +  ++        EL   NILL+GPT
Sbjct: 66  TPHEIRHHLDDYVIGQENAKKVLAVAVYNHYKRLRNVSNEGVNGEGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V
Sbjct: 126 GSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  +A            
Sbjct: 186 Y-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ------- 229

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                      +   +        KI       +  L +    RL               
Sbjct: 230 --------GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRL--------------- 266

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                           ++ +GIG S E                 K  S        ++  
Sbjct: 267 ----------------NTRSGIGFSAE----------------VKSESERATEGELLSQV 294

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   L  L++     IL + ++ L  QY+ L + EG+ L+F
Sbjct: 295 EPEDLIKFGLIPEFIGRLPVVATLGELSEEALIQILKEPKNALTKQYQALFELEGVNLEF 354

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRL 421
            E+++ A+A  A++  +     GAR L++++E  L +  +    ++  + +VID   V  
Sbjct: 355 REEALKAIAKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMEHVEKIVIDEMVVAG 409

Query: 422 HIGDFP 427
                 
Sbjct: 410 QSEPLV 415


>gi|163942220|ref|YP_001647104.1| ATP-dependent protease ATP-binding subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|229013688|ref|ZP_04170817.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides DSM 2048]
 gi|229135318|ref|ZP_04264112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST196]
 gi|229169215|ref|ZP_04296929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH621]
 gi|229175154|ref|ZP_04302670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus MM3]
 gi|163864417|gb|ABY45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           weihenstephanensis KBAB4]
 gi|228608290|gb|EEK65596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus MM3]
 gi|228614281|gb|EEK71392.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH621]
 gi|228648141|gb|EEL04182.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST196]
 gi|228747610|gb|EEL97484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides DSM 2048]
          Length = 444

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALVEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 422


>gi|288800854|ref|ZP_06406311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332315|gb|EFC70796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 417

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 113/427 (26%), Positives = 180/427 (42%), Gaps = 82/427 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLV 59
           + L     P+EI   LD+YIIGQ DAKR +A+A+ N ++R    AD    E+   NI++V
Sbjct: 66  LDLNKVPKPQEIKKYLDQYIIGQDDAKRYLAVAVYNHYKRLNQSADDDGVEIEKSNIIMV 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   +  ++R
Sbjct: 126 GSTGTGKTLLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYDLEAAQR 185

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V            +D                             +I+     +D  + 
Sbjct: 186 GIV-----------FID-----------------------------EIDKIARKADNPSI 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                       L +L    M +   K  R                   D D +H D+  
Sbjct: 206 TRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRN 249

Query: 240 MVENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           ++   G  F D  + KI  R + + +G +   VQ                   N D    
Sbjct: 250 ILFICGGAF-DGIERKIAQRLNTHVVGYNS--VQNLR----------------NVDKEDL 290

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           +        +   L+PEI GR PV  HL  LN+   R IL + +++++ QY++L   +GI
Sbjct: 291 MKYILPQDLKSFGLIPEIIGRLPVLTHLNPLNREALRRILVEPKNSIVKQYEKLFAMDGI 350

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+F    +D + D AV        +GAR L++++E ++ D  F     ++K+  +  +Y
Sbjct: 351 KLEFDTAVLDYVVDKAVEYK-----LGARGLRSIVEAMMIDAMFEVPSSKKKSFKVTLDY 405

Query: 419 VRLHIGD 425
            + HI  
Sbjct: 406 AQKHIDK 412


>gi|228941639|ref|ZP_04104186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228960748|ref|ZP_04122387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228967575|ref|ZP_04128601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228974568|ref|ZP_04135134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|229048189|ref|ZP_04193758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH676]
 gi|229152674|ref|ZP_04280862.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1550]
 gi|228630820|gb|EEK87461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1550]
 gi|228723176|gb|EEL74552.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH676]
 gi|228784971|gb|EEM32984.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792154|gb|EEM39730.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228798964|gb|EEM45939.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228817851|gb|EEM63929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 444

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 422


>gi|116747550|ref|YP_844237.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696614|gb|ABK15802.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobacter fumaroxidans MPOB]
          Length = 417

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 106/422 (25%), Positives = 171/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +L  D  D EL   NIL++GPTG GK
Sbjct: 64  KPAEIKAILDQYVIGQDRAKKILSVAVHNHYKRIELKIDKNDVELQKSNILMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ R  V    
Sbjct: 124 TLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVSLIQAADYDIEKASRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S   S      G  
Sbjct: 180 ----------------------------------YIDEID-KIAKKSDSPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     K   +   Q+                  +   +I  +     
Sbjct: 205 VQQALLKILEGTVANVPPKGGRKHPQQEFIK---------------IDTTNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            +L+    I +R    G+G   E      +   E  SV      +  + +L         
Sbjct: 250 NYLETI--IQSRVGVKGMGFGAE------IRSKEDKSVGEILIKVQPEDLLKF------- 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GR PV   L  L + +   ILT+ ++ L+ QYK+L + E + L FTE  
Sbjct: 295 ----GMIPEFVGRLPVIATLNELTEDELVSILTEPKNALVKQYKKLFELEDVRLRFTEGV 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGD 425
           + A+A  A+   S     GAR L+++ME ++ DI +      + +  +I+ + +      
Sbjct: 351 LRAIAKEAIRRKS-----GARGLRSIMENIMLDIMYDLPSHPEIQECIINEDVLVKQAKP 405

Query: 426 FP 427
             
Sbjct: 406 LL 407


>gi|304383400|ref|ZP_07365866.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii
           DSM 16973]
 gi|304335568|gb|EFM01832.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii
           DSM 16973]
          Length = 412

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 109/426 (25%), Positives = 179/426 (42%), Gaps = 82/426 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVG 60
           KL     P+EI   LD Y+IGQ +AKR +++++ N ++R Q PAD +  E+   NI++VG
Sbjct: 57  KLKDVPKPKEIKKYLDDYVIGQDEAKRYLSVSVYNHYKRLQQPADDKGVEIEKSNIIMVG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R +ARL   PF  V+ T FTE GYVG +VE I+  L+ VA   V  +   
Sbjct: 117 STGTGKTLLARTIARLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYDVAAAECG 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D                             +I+     SD  +  
Sbjct: 177 IV-----------FID-----------------------------EIDKIARKSDNPSIT 196

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                      L +L    M +   K  R                   D D +H D+  +
Sbjct: 197 RDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHP----------------DQDYIHVDTRNI 240

Query: 241 VENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +   G  F D  + KI  R + + +G                S  + ++    TD + +I
Sbjct: 241 LFICGGAF-DGIERKIAQRMNTHVVGY--------------NSVQNVRHID-KTDLMKYI 284

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                   +   L+PEI GR PV  +L  L++   R IL   ++++I QY +L + +GI 
Sbjct: 285 L---PQDLKSFGLIPEIIGRLPVLTYLNPLDREALRNILVTPKNSIIKQYVKLFQMDGIE 341

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F  + +D + D A+        +GAR L++++E ++ +  +     + K   +  +Y 
Sbjct: 342 LTFDNEVLDFIVDKAMEYK-----LGARGLRSIVEAIMMNAMYEVPSKRLKQFKVTPDYA 396

Query: 420 RLHIGD 425
           R  +  
Sbjct: 397 RAQLDK 402


>gi|229111943|ref|ZP_04241487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-15]
 gi|228671507|gb|EEL26807.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-15]
          Length = 444

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 422


>gi|87309270|ref|ZP_01091406.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Blastopirellula marina DSM 3645]
 gi|87287909|gb|EAQ79807.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Blastopirellula marina DSM 3645]
          Length = 425

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 186/417 (44%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPREI++ L+ Y+IGQ +AK+ +++A+ N ++R  + A+  + E+   NI+L GPTG GK
Sbjct: 75  SPREIMTHLNEYVIGQGNAKKVLSVAVHNHYKRLMMGAEGSEVEIEKSNIMLAGPTGSGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V  ++R       
Sbjct: 135 TLLARTLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQR------- 187

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                          G +   EID ++  TS+++S      G  
Sbjct: 188 -------------------------------GVLYIDEID-KIGKTSNNVSITRDVSGEG 215

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +            ++    ID       +I  +     
Sbjct: 216 VQQALLKMLEGTVANVPPQGGRKHP----------EQQYIQID-----TSNILFICGGTF 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           V ++E   +  R     IG    G Q       + +        +N+D IL         
Sbjct: 261 VGIEEI--VRKRLGRKSIGF---GQQTGYKSEADSAEC---LRQVNSDDILEF------- 305

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L+ +  + +LT+ ++ LI QY++L + E   LDF++D+
Sbjct: 306 ----GLIPELVGRLPVVCSLEPLDVAGLKSVLTEPKNALIKQYQQLFEMENAQLDFSDDA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLH 422
           ++A+A  A+N  +     GAR L++++E V+ DI F   + +  +VV I  E +   
Sbjct: 362 LEAIALRAMNKGT-----GARGLRSIIEEVMLDIMFDLPEKEPGSVVSITREVIEGR 413


>gi|159030461|emb|CAO91363.1| clpX [Microcystis aeruginosa PCC 7806]
          Length = 444

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 167/425 (39%), Gaps = 86/425 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILL 58
            PREI   LD Y+IGQ +AK+ +++A+ N ++R +            +   EL   NILL
Sbjct: 78  KPREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPEDSIELQKSNILL 137

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +                                         EID ++A  S + S 
Sbjct: 198 RGII--------------------------------------YIDEID-KIARKSENTSI 218

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   +     +   +   Q C                 +   +I
Sbjct: 219 TRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------QIDTSNI 263

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +     V LD+   I  R     +G  + G  +     V                 L 
Sbjct: 264 LFICGGAFVGLDKV--IDQRLGKKSMGFIQPGDSQASKDKVAA--------------GLL 307

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                  + +   ++PE  GR PV   L  L++     ILT   + L+ QY++L+K + +
Sbjct: 308 KQMTPDDLVK-FGMIPEFVGRIPVLAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNV 366

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F  D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ K  +I  E
Sbjct: 367 QLEFKSDAVLAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVKRCLITRE 421

Query: 418 YVRLH 422
            V   
Sbjct: 422 MVEKR 426


>gi|269469209|gb|EEZ80743.1| ATP-dependent protease Clp, ATPase subunit [uncultured SUP05
           cluster bacterium]
          Length = 418

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 177/425 (41%), Gaps = 78/425 (18%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           ++++P+E+   L+ Y+IGQ  AK+ +++A+ N ++R Q      D EL   NIL++GPTG
Sbjct: 58  WDYTPKELRDFLNEYVIGQDHAKKVLSVAVYNHYKRLQSGYISNDVELDKSNILMIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LAR+   PF   + T  TE GYVG +VE +I+ L+         + R    
Sbjct: 118 SGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKSLLSRCDFDPERAER---- 173

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
               I   + I        + S TR+V  + ++      K I+  VA             
Sbjct: 174 ---GIIFIDEIDKISRRSDSPSITRDVSGEGVQQA--MLKLIEGTVASVPPQGG------ 222

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +                   + +T+  D+ +++  
Sbjct: 223 ------------------------RKHP-----------------NQETIDVDTSKILFI 241

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            G  F D  DKI+ +      G+      +D                  T   LF     
Sbjct: 242 CGGAF-DGLDKIIGKRVEKSTGIGFSAAVKDQSKE-------------KTLSDLFDLIEP 287

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
             + +   L+PE+ GR PV+  L  L++     ILT  ++++I Q+KE+   EG+ L F 
Sbjct: 288 EDLIK-YGLIPELVGRLPVQTSLGELDEDALIQILTKPKNSVIKQFKEVFLMEGVKLTFK 346

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
           + ++ A+A +A+   +     GAR L++++E +L D  F    ++    VVID E V   
Sbjct: 347 KPALSAIAKLAIKRKT-----GARGLRSIIEDLLLDTMFDLPSMESVMEVVIDKEVVEKK 401

Query: 423 IGDFP 427
                
Sbjct: 402 KTPLM 406


>gi|325479719|gb|EGC82809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 402

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 177/417 (42%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R     +  D EL   NIL++GPTG GK
Sbjct: 60  TPKEIKDFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A   +      EV E+ 
Sbjct: 120 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDI------EVAERG 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I  +E  +D +                    +  +  I  +V+      +   +  G  
Sbjct: 174 IIYVDE--IDKIT------------------RKSENPSITRDVSGEGVQQALLKLIEGTE 213

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                        + +  D+  ++   G 
Sbjct: 214 ----------ANVPPQGGRKHPS--------------------QEYIQVDTTNILFILGG 243

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    D I  R S   IG      +++   L E          ++T+ +L         
Sbjct: 244 AFDGIEDIIGRRLSEKTIGFGANVNKQEKASLKE----------VSTEDLLKF------- 286

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+ V L +L+      IL + +++ + QY++L + +G+ L F +D+
Sbjct: 287 ----GLIPEFIGRVPIIVSLDALDVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDDA 342

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  + +  +     GAR L+T+ME +L D+ F    + + + V++  E +   
Sbjct: 343 LYEIAKKSYDQKT-----GARGLRTIMENLLLDLMFEIPSIDDLEEVIVTKESIADK 394


>gi|240256421|ref|NP_568714.4| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           / protein binding [Arabidopsis thaliana]
 gi|332008480|gb|AED95863.1| ATP-dependent Clp protease [Arabidopsis thaliana]
          Length = 608

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 175/436 (40%), Gaps = 93/436 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRD------ 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +            D+ D      
Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF   + T  T+  YVG +VE I+  L   
Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQASYVGEDVESILYKLYVE 318

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V E++R  V                                         E+D   
Sbjct: 319 AGCNVEEAQRGIV--------------------------------------YIDEVD--- 337

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 + +    GG  V    + +   K++         +SV      L RD     I 
Sbjct: 338 ---KMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTV-----VSVPIPEKGLRRDPRGDSIQ 389

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MDT       ++   G  F+D    +  R     IG             +  ++V     
Sbjct: 390 MDT-----KDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAV----- 439

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L        V+    L+PE  GR P+ V L +LN+     +LT+ +S L  QY
Sbjct: 440 ---TSSLLESLQSEDLVA--YGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQY 494

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-- 407
           K+L +   + L FTE +   +A  A++ N+     GAR L++++E +L +  F   D   
Sbjct: 495 KKLFRMNNVQLQFTEGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSIT 549

Query: 408 ----QEKTVVIDAEYV 419
                 K V++D E V
Sbjct: 550 EGSQSIKAVLVDEEAV 565


>gi|118479638|ref|YP_896789.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis str. Al Hakam]
 gi|228917110|ref|ZP_04080668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929519|ref|ZP_04092538.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935791|ref|ZP_04098603.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229141213|ref|ZP_04269752.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST26]
 gi|229186714|ref|ZP_04313872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BGSC 6E1]
 gi|118418863|gb|ABK87282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           thuringiensis str. Al Hakam]
 gi|228596727|gb|EEK54389.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BGSC 6E1]
 gi|228642254|gb|EEK98546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST26]
 gi|228823848|gb|EEM69668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830098|gb|EEM75716.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842528|gb|EEM87618.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 444

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ ++ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETV 422


>gi|90021256|ref|YP_527083.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharophagus
           degradans 2-40]
 gi|123277147|sp|Q21KA8|CLPX_SACD2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89950856|gb|ABD80871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Saccharophagus degradans 2-40]
          Length = 431

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 166/406 (40%), Gaps = 81/406 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63
           +P+EI   LD Y+IGQ+ AK+ +A+A+ N ++R ++     +    EL   NILLVGPTG
Sbjct: 68  TPQEISETLDEYVIGQKQAKKVLAVAVYNHYKRLRVGDKKKSKDDVELGKSNILLVGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V 
Sbjct: 128 SGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY 187

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 188 -------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------ 232

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  V   +I  +  
Sbjct: 233 ------------------------RKHPQQEFL---------------QVDTGNILFICG 253

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                LD+   I  R    GIG S E   +D    V  +    +                
Sbjct: 254 GAFAGLDKV--IRDRSEKGGIGFSAEVKSKDSGKNVGETLRELE---------------- 295

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L  L++     IL + +++L+ QY +L + EG  +DF 
Sbjct: 296 PEDLVRYGLIPEFVGRLPVIATLDELDQDALVRILKEPKNSLVKQYSKLFEMEGSEVDFR 355

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +D+++A+A+ A+   +     GAR L+++ME VL D  +     + 
Sbjct: 356 DDALEAVANKAMERKT-----GARGLRSIMENVLLDTMYKIPSEEN 396


>gi|291550776|emb|CBL27038.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus torques L2-14]
          Length = 423

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 171/414 (41%), Gaps = 79/414 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P E+ + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEMKAFLDEYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDI------------ 171

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S + S      G  
Sbjct: 172 -ERAEHGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+            LI +DT    +I  +     
Sbjct: 205 VQQALLKIIEGTVASVPPQGGRKHPHQE------------LIQIDT---TNILFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG + E   +                    D  + +       
Sbjct: 250 EGIDKI--IETRIDRKSIGFNAEIASKHEY-----------------DMDVLLQEALPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F +D+
Sbjct: 291 LVKFGLIPELVGRLPVTVSLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +  +A+  +   +     GAR L+ +ME ++ D  F+   D   K   I  E V
Sbjct: 351 LLEIAETTLKRKT-----GARGLRAIMENIMMDTMFTVPSDKTIKECRITKEAV 399


>gi|82703456|ref|YP_413022.1| ATP-dependent protease ATP-binding subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|123543991|sp|Q2Y6J1|CLPX_NITMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82411521|gb|ABB75630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosospira
           multiformis ATCC 25196]
          Length = 425

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 173/426 (40%), Gaps = 85/426 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64
           P EI   LD+Y+IGQ+ AK+ +++A+ N ++R +  A   D    EL   NILL+GPTG 
Sbjct: 66  PHEIRQILDQYVIGQEQAKKILSVAVYNHYKRLRTLAKSADPDEIELAKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LARL   PF+  + T  TE GYVG +VE II+ L+        ++++  V  
Sbjct: 126 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKCNYDAEKAQQGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +                   + + V  D+  ++   
Sbjct: 230 -----------------------RKHP-----------------NQEFVQVDTTNILFIC 249

Query: 245 GIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  +KI+  R    GIG S     +D                   D    +    
Sbjct: 250 GGAF-DGLEKIIRARSEKGGIGFSASVRSQDNRK----------------DFGAVLRGVE 292

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDF 362
                   L+PE  GR PV   L+ L+++    ILT+  + LI QY+++   E GI L+F
Sbjct: 293 PEDLVKYGLIPEFVGRLPVVATLEELDEAALIQILTEPRNALIKQYQKMFHMEGGIDLEF 352

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
            E ++ A+A  A+   +     GAR L++++E  L D  F    L+    VVID   V  
Sbjct: 353 REQALKAIARKALVRKT-----GARGLRSILEAALLDTMFDLPSLENVAKVVIDHTSVNG 407

Query: 422 HIGDFP 427
            I    
Sbjct: 408 DIKPIL 413


>gi|229827569|ref|ZP_04453638.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC
           49176]
 gi|229788207|gb|EEP24321.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC
           49176]
          Length = 429

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/418 (23%), Positives = 173/418 (41%), Gaps = 80/418 (19%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           FN   P +I   LD+Y+IGQ DAK+A+A+A+ N ++R  +   L  EL   NI++VGPTG
Sbjct: 58  FNLYKPEQIKDFLDQYVIGQDDAKKALAVAVYNHYKRVSMGKSLDVELQKSNIVMVGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+  A   +         
Sbjct: 118 SGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENVLLKLIQSAEYDI--------- 168

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                 AE  I+                            EID ++   S + S      
Sbjct: 169 ----DRAEHGII-------------------------YIDEID-KITRKSENTSITRDVS 198

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  V    L  L   V     +   +   Q+      +D               I  +  
Sbjct: 199 GEGVQQALLKMLEGTVASVPPQGGRKHPHQEFLQIDTKD---------------ILFICG 243

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                +++   I +R     IG   E   +    + E             +   F+  G 
Sbjct: 244 GAFDGIEKI--IESRIDKKSIGFGGEIEDKSKKDVSE--------LLKQLEPQDFVKFG- 292

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE  GR P+ V L  L+++    I+T+ ++ ++ QYK+L++ +G+ L+F 
Sbjct: 293 --------MIPEFIGRVPILVTLDLLDENALMRIITEPKNAMVKQYKKLLEFDGVELEFE 344

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++I  +A  +    +     GAR L+++ME+ + D  F+    ++    ++    V+
Sbjct: 345 DEAIREIAKQSAARKT-----GARGLRSIMEKTMLDTMFTIPSEEKAVKCIVTVAAVK 397


>gi|223042117|ref|ZP_03612289.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
 gi|223017094|gb|EEF15534.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           minor 202]
          Length = 414

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/421 (24%), Positives = 168/421 (39%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
           +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R +      +     EL   NILL+GPT
Sbjct: 65  TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKRLKSALSNHEVTNGVELGKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 125 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDPEQAERGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 185 --------------------------------------FIDEID-KITRKSESASITRDV 205

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  L   V     +   +    +  P          +D   +       + 
Sbjct: 206 SGEGVQQALLKLLEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 248

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DKI     +   GIG + E         +                 LF  
Sbjct: 249 ICGGAFAG-LDKIVEARTNKQGGIGFAAELKNDKERQDLTE---------------LFKQ 292

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                + R   L+PE+ GR PV   L+ L+++    ILT+ ++ +I QY+ L + EG+ L
Sbjct: 293 VEPEDLVR-FGLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVEL 351

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FT+D++ A+A  A+   +     GAR L++++E +L D  +    L  K V I+   V 
Sbjct: 352 EFTQDALVAIAKKAIVRKT-----GARGLRSIVEGLLLDTMYDLPTLNAKKVTIEKACVE 406

Query: 421 L 421
            
Sbjct: 407 S 407


>gi|149926125|ref|ZP_01914387.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
 gi|149824943|gb|EDM84155.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105]
          Length = 423

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 181/427 (42%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI S LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRSILDQYVIGQDKAKRVLAVAVYNHYKRLRHMSKKDDIELTKSNILLVGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYEVEKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + D V  D+  ++   G 
Sbjct: 227 ---------------------RKHP-----------------NQDFVQIDTTNVLFIVGG 248

Query: 247 VFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F +  DK++  R   +GIG                +  S + G++ T     +A     
Sbjct: 249 AF-EGLDKVIRNRSERSGIGFG-------------ATVKSKEEGNVGT----LLAEVEPE 290

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE+ GR PV   L+ L++     ILT  ++ ++ Q+++L++ +G  L+    
Sbjct: 291 DLIKFGIIPELVGRLPVIATLEELDEPALIEILTKPKNAMVKQFEKLLEMDGAELEVRPS 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L+T++E+ L  I +    D   K VVID   +     
Sbjct: 351 ALSAIAKKAIQRKT-----GARGLRTILEQALLGIMYDLPGDTNVKKVVIDENTINGTGQ 405

Query: 425 DFPSETD 431
                 D
Sbjct: 406 PLLIYED 412


>gi|186681336|ref|YP_001864532.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc punctiforme
           PCC 73102]
 gi|238691194|sp|B2IT91|CLPX_NOSP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|186463788|gb|ACC79589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nostoc
           punctiforme PCC 73102]
          Length = 446

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 171/430 (39%), Gaps = 97/430 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------QLPADLRDELMPKNILL 58
            PREI   LD ++IGQ +AK+ +++A+ N ++R          +  AD   EL   NILL
Sbjct: 81  KPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKATGKAAADDAVELQKSNILL 140

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   + E++
Sbjct: 141 IGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQ 200

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    + +                
Sbjct: 201 RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQ 260

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            D SN     G +   L                                  ++++D   V
Sbjct: 261 IDTSNILFVCGGAFVGL----------------------------------EKVVDQ-RV 285

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + +I  V+                    G G ++E    D L  +    +  K+G I  
Sbjct: 286 GKKAIGFVQ-------------------PGEGQTKEKRAADTLRHLAPDDL-VKFGMI-- 323

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                               PE  GR P+   +  L++     ILT   S L+ QY++L+
Sbjct: 324 --------------------PEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLL 363

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-V 412
           K + + LDF  D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ T  
Sbjct: 364 KMDNVQLDFKPDALRAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVTRC 418

Query: 413 VIDAEYVRLH 422
            +  E V   
Sbjct: 419 TVTREMVEKR 428


>gi|295689636|ref|YP_003593329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
 gi|295431539|gb|ADG10711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           segnis ATCC 21756]
          Length = 420

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 161/406 (39%), Gaps = 89/406 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR +   IG                       G+  TD            
Sbjct: 251 AGLEKI--ISARGAAKSIGF----------------------GAKVTDPEERRTGEILRN 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L 
Sbjct: 287 VEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLT 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           FT+D++  +A  A+   +     GAR L+++ME +L +  F   + 
Sbjct: 347 FTDDALHQVAKKAIARKT-----GARGLRSIMEGILLETMFELPNY 387


>gi|167624685|ref|YP_001674979.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
 gi|189044151|sp|B0TLU8|CLPX_SHEHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167354707|gb|ABZ77320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
          Length = 425

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/415 (23%), Positives = 165/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNATPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     +++I+                 
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----EKVIEQ---------------- 261

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                         G GIG   E         +  + +  +      D + F        
Sbjct: 262 ----------RAHVGTGIGFGAEVKGEADKKSISDTLLQVE----PEDLVKF-------- 299

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+      IL++ ++ +  Q+  L + E + L+F +D+
Sbjct: 300 ----GLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A    +     GAR L++++E +L DI +      +   VVID   V+
Sbjct: 356 LKAIALKAQTRKT-----GARGLRSIVEGILLDIMYDLPSTDDVAKVVIDESVVK 405


>gi|262201988|ref|YP_003273196.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gordonia
           bronchialis DSM 43247]
 gi|262085335|gb|ACY21303.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gordonia
           bronchialis DSM 43247]
          Length = 426

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 167/435 (38%), Gaps = 95/435 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------DELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q             EL   
Sbjct: 56  VKLDELPKPAEIRDFLENYVIGQDTAKRTLAVAVYNHYKRIQAGEKKDSRTGETVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           + +       DEV + A                             R  E      D+  
Sbjct: 176 KRAETGIIYIDEVDKIA-----------------------------RKSENPSITRDVSG 206

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +        ASV      +   +         +   V   +  L +      I 
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEK------IV 260

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D + +  I    +           +  +D  +      E +  DL+             
Sbjct: 261 SDRIGKRGIGFGND-----------VATKDEVDTSDHFAEVMPEDLIKF----------- 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                 L+PE  GR PV   + +L+K     IL++ ++ L+ QY
Sbjct: 299 ---------------------GLIPEFIGRLPVVASVTNLDKESLVSILSEPKNALVKQY 337

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L   + + L+FT D+++A+AD A++  +     GAR L+ +ME VL  + +      +
Sbjct: 338 TRLFDMDNVELEFTTDALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDD 392

Query: 410 -KTVVIDAEYVRLHI 423
            + VV+  E VR ++
Sbjct: 393 VEKVVVTGETVRDNV 407


>gi|110803718|ref|YP_698703.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           perfringens SM101]
 gi|123341787|sp|Q0ST54|CLPX_CLOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110684219|gb|ABG87589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens SM101]
          Length = 435

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 173/429 (40%), Gaps = 84/429 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD+Y++GQ  AK+++A+A+ N ++R     A+   EL   NILL+GPTG GK
Sbjct: 65  KPQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 125 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV------------ 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A  S + S      G  
Sbjct: 173 -ERAEKGII-------------------------YIDEID-KIARKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V           ++         +  Q       ++          ++  +I  +     
Sbjct: 206 VQQA--------LLKILEGTTASVPPQGGRKHPHQEFIQ-------INTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R + + IG   E   +           +      +      +  G    
Sbjct: 251 DGIDKI--IEKRGTKSSIGFGAEVKGKSEK--------NVGELLKDIMPGDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE++
Sbjct: 297 -----LIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH--- 422
           + A+AD A+N  +     GAR L+ ++E  + DI F     +      I  E ++     
Sbjct: 352 LKAIADEAINRKT-----GARGLRAIVEETMMDIMFDIPSEENIVKATITEETIKDRKDP 406

Query: 423 -IGDFPSET 430
            +   P   
Sbjct: 407 ELEKLPEGE 415


>gi|127513435|ref|YP_001094632.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica
           PV-4]
 gi|166215203|sp|A3QFX5|CLPX_SHELP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126638730|gb|ABO24373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           loihica PV-4]
          Length = 426

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 166/417 (39%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNATPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASGAF 304
                    V    G G  V  E  +  +  ++         KYG I             
Sbjct: 263 -------SHVGTGIGFGAEVKGEADKATISDVLLQVEPEDLVKYGLI------------- 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                    PE  GR PV   L  L+++    IL++ ++ L  Q+  L + EG+ L+F E
Sbjct: 303 ---------PEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFRE 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           D++ A+A  A++  +     GAR L++++E +L DI +     +    VVID   V+
Sbjct: 354 DALKAIALKAMDRKT-----GARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405


>gi|242279531|ref|YP_002991660.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
 gi|242122425|gb|ACS80121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           salexigens DSM 2638]
          Length = 417

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 175/425 (41%), Gaps = 82/425 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTG 63
            SP+EI   LD Y+IGQ+  K+ +A+A+ N ++R    Q       E+   NILL+GPTG
Sbjct: 62  LSPQEIKELLDEYVIGQEHPKKILAVAVHNHYKRVYYTQSSGTDDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R  + 
Sbjct: 122 SGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIDAASRGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I        + S TR+V  + ++   +   E                   
Sbjct: 182 -------IDEIDKISRKGDSPSITRDVSGEGVQQALLKIIE------------------- 215

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G            + +   G +K  +                       +   +I  +  
Sbjct: 216 GTE----------ANIPPKGGRKHPQQEFI------------------RLDTSNILFILG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
              + LD    +  R SG+GIG   +  Q+    + E                LF  +  
Sbjct: 248 GAFIGLDTI--VQQRMSGSGIGFGAKVEQKSDKGISE----------------LFAKAEP 289

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
             + +   L+PE  GR PV+  L  L++ D   IL + ++ L+ QYK++ + +G+ L FT
Sbjct: 290 ADLVK-FGLIPEFVGRIPVQTALSELSEEDLVRILQEPKNALVKQYKKMFELDGVRLTFT 348

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            +++ ++A  AV   +     GAR L+ V+E ++ DI +    +   K  VI+   V   
Sbjct: 349 ANALKSIAAKAVERKT-----GARGLRNVLESIMLDIMYKLPSMSGVKECVINKSVVENG 403

Query: 423 IGDFP 427
           +    
Sbjct: 404 MEPIL 408


>gi|320450476|ref|YP_004202572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus
           scotoductus SA-01]
 gi|320150645|gb|ADW22023.1| ATP-dependent Clp protease, ATP-binding, subunit ClpX [Thermus
           scotoductus SA-01]
          Length = 400

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 173/421 (41%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT
Sbjct: 58  KPQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHPE---AEIGKSNILLIGPTGTGKT 114

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LAR    PF   + T  TE GYVG +VE +I  L+  A   V  +    V     
Sbjct: 115 LLAETLARFLDVPFAIADATTLTEAGYVGEDVENVILRLLQNADFDVERAEMGIVY---- 170

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +    I+  +A+                
Sbjct: 171 ---IDEIDKIARKSENPSLTRDVSGEGVQQALLKI--IEGTIANVPPQGG---------- 215

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+  P               V+  +I  +      
Sbjct: 216 --------------------RKHPHQEFIP---------------VNTKNILFILGGAFE 240

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L+   K  AR     IG +R   +      +E          I  D + F         
Sbjct: 241 GLENIVK--ARTERTTIGFTRGKAKEAHEEPLE---------VIPEDLVKF--------- 280

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               ++PE  GR P+ V L  L + D   ILT+ ++ L+ QY+ELM+ EGI L FT+ ++
Sbjct: 281 ---GMIPEFVGRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELMRLEGIELRFTQAAL 337

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
             +A  A+   +     GAR L+ ++E+ + D+ F A     + +VID  ++   +    
Sbjct: 338 KEIARRALKRGT-----GARGLRAILEKTMVDLMFEAPGSGVRELVIDLPHLDQPLKALE 392

Query: 428 S 428
            
Sbjct: 393 E 393


>gi|302390302|ref|YP_003826123.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermosediminibacter oceani DSM 16646]
 gi|302200930|gb|ADL08500.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermosediminibacter oceani DSM 16646]
          Length = 421

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 174/429 (40%), Gaps = 80/429 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M  +    P EI   LD+Y+IGQ+ AK+ +++A+ N ++R        D EL   NI+++
Sbjct: 56  MDFSNIPKPSEIKEILDQYVIGQEKAKKILSVAVYNHYKRINSSVKTDDVELQKSNIIML 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 116 GPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 175

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I          S TR+V  + ++   +   E  I    +       
Sbjct: 176 GIVY-------IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTI---ASVPPQGGR 225

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P    + I   + LF                   +  + +      I  + + + SI 
Sbjct: 226 KHPHQEFIQIDTTNILF--------------ICGGAFEGIEK------IIANRIGKKSIG 265

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                          I +++  N   +  + +  DLL          K+G I        
Sbjct: 266 FGAE-----------IRSKEEKNVGELLSQIMPEDLL----------KFGMI-------- 296

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                         PE  GR P+ V L +L++     IL + ++ L+ QY++L + + + 
Sbjct: 297 --------------PEFVGRVPIIVTLDALDEQALIRILKEPKNALVKQYQKLFEMDNVQ 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+FT++++  +A  A+N  +     GAR L+ ++E V+ D+ +      +    V+  E 
Sbjct: 343 LEFTDEALQVIAQEALNRKT-----GARGLRAILEEVMMDVMYEIPSRSDITKCVVTKEV 397

Query: 419 VRLHIGDFP 427
           V        
Sbjct: 398 VLKREEPII 406


>gi|160893843|ref|ZP_02074626.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
 gi|156864495|gb|EDO57926.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50]
          Length = 430

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 175/417 (41%), Gaps = 81/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ++AK+ +++A+ N ++R     D   EL   NIL+VGPTG GK
Sbjct: 62  LKPKEIREFLDQYVIGQEEAKKVLSVAVYNHYKRIMADKDFDVELQKSNILMVGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 122 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV------------ 169

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S ++S      G  
Sbjct: 170 -ERAEHGII-------------------------YIDEID-KITKKSENVSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +                     + +  D+  ++   G 
Sbjct: 203 VQQALLKIVEGTVASVPPQGGRKHP-----------------HQEFIQIDTSNILFICGG 245

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R     IG + E V +    + E                 F+  G   
Sbjct: 246 AF-DGLEKIIDNRIGKKAIGFNAEVVDKTEQDIGE--------LLKQVTPQDFVKYG--- 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  LNK     ILTDT+S +  QYK+L + +G+ L+F +D
Sbjct: 294 ------LIPEFVGRLPITVTLDLLNKDALVRILTDTKSAICKQYKKLFELDGVELEFDKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           ++ A+A+ A+   +     GAR L++++E+   D+ +    D +    VI  E +  
Sbjct: 348 ALYAIAEEAMERKT-----GARGLRSIIEKATLDLMYEIPSDDKVAKCVITKEVITD 399


>gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
 gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria
           mucosa C102]
          Length = 421

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 187/416 (44%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL   NILL+GPTG GK
Sbjct: 67  TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 229 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG       +D     E + +S  + ++  + ++         
Sbjct: 251 AFAGLEKVIRQRTEKGGIGFGAAVHSKD-----ENADISALFETVEPEDLIKF------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR P+   L  L++     ILT+ ++ L+ QY+ L + E + L+F ED+
Sbjct: 299 ----GLIPELIGRLPMIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVSLEFEEDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
           + ++A +A+   +     GAR L++++ER L D  ++  DL++   VVI+ E V  
Sbjct: 355 LRSIAKLAMERKT-----GARGLRSIVERCLLDTMYALPDLKDVAKVVINKEVVEK 405


>gi|225175199|ref|ZP_03729195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169375|gb|EEG78173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter
           alkaliphilus AHT 1]
          Length = 420

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 171/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD+YIIGQ +AK+++A+A+ N ++R        D E+   NI L+GPTGVGK
Sbjct: 63  KPTEIKDILDQYIIGQDEAKKSLAVAVYNHYKRINTEQKPDDVEIQKSNIALIGPTGVGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ +  V    
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDLEKAEKGIVY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  +    +         P    
Sbjct: 180 ----IDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTV---ASVPPQGGRKHPHQEF 232

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           + I   + LF                   +  + +      +  D + +  I        
Sbjct: 233 MQIDTTNILF--------------ICGGAFDGIEK------LIQDRIGKKGIGFGAE--- 269

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                   + A+  GN   + R  + +DL+                              
Sbjct: 270 --------VAAKQDGNIGEILRHVLPQDLIKY---------------------------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L +L++     ILT+  + L  QY++L + + + L+F + +
Sbjct: 294 ----GLIPEFVGRVPVVATLDALDEEALVRILTEPRNALTKQYQKLFELDCVNLEFKDGT 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           ++ +A+ A+  N+     GAR L+ ++E +L D+ +      +    +I  E ++     
Sbjct: 350 LEIIAEEAIRRNT-----GARGLRAILEGILLDVMYELPTRDDIGKCIITKEAIQNKEKP 404

Query: 426 FPSETD 431
                D
Sbjct: 405 ILVTAD 410


>gi|182627118|ref|ZP_02954836.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721]
 gi|177907507|gb|EDT70165.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721]
          Length = 435

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 173/429 (40%), Gaps = 84/429 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD+Y++GQ  AK+++A+A+ N ++R     A+   EL   NILL+GPTG GK
Sbjct: 65  KPQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 125 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV------------ 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A  S + S      G  
Sbjct: 173 -ERAEKGII-------------------------YIDEID-KIARKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V           ++         +  Q       ++          ++  +I  +     
Sbjct: 206 VQQA--------LLKILEGTTASVPPQGGRKHPHQEFIQ-------INTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R + + IG   E   +           +      +      +  G    
Sbjct: 251 DGIDKI--IEKRGTKSSIGFGAEVKGKSEK--------NVGELLKDIMPGDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE++
Sbjct: 297 -----LIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH--- 422
           + A+AD A+N  +     GAR L+ ++E  + DI F     +      I  E ++     
Sbjct: 352 LKAIADEAINRKT-----GARGLRAIVEETMMDIMFDIPSEENIVKATITEETIKDRKDP 406

Query: 423 -IGDFPSET 430
            +   P   
Sbjct: 407 ELEKLPEGE 415


>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding specificity subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300074679|gb|ADJ64078.1| ATP-dependent protease (ATP-binding specificity subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 67  TPQEITELLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V ++++  V    
Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE---------------------- 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D V  D+  ++   G 
Sbjct: 218 -------GTMASVPPQGGRKHP--------------------NQDFVQIDTTNIMFICGG 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R   +GIG S                 S K  +  ++  + + +    +
Sbjct: 251 AFDGLARIISDRSEKSGIGFS----------------ASVKSQTQKSNSEVLLNAEPEDL 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV   L  L++     IL + ++ LI QY +L++ EG  L+    +
Sbjct: 295 VK-FGLIPELVGRLPVIATLNELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           + A+A  A+   +     GAR L++++E  L D+ +     Q    VV+D   +
Sbjct: 354 MHAIAKKALARKT-----GARGLRSILEHALLDVMYELPSEQNVAKVVVDENTI 402


>gi|18310374|ref|NP_562308.1| ATP-dependent protease ATP-binding subunit [Clostridium perfringens
           str. 13]
 gi|110800496|ref|YP_696087.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           perfringens ATCC 13124]
 gi|168207807|ref|ZP_02633812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens E str. JGS1987]
 gi|168212103|ref|ZP_02637728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215326|ref|ZP_02640951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens CPE str. F4969]
 gi|168217823|ref|ZP_02643448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens NCTC 8239]
 gi|169342285|ref|ZP_02863363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens C str. JGS1495]
 gi|21263462|sp|Q8XKK2|CLPX_CLOPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123148746|sp|Q0TQK3|CLPX_CLOP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|18145054|dbj|BAB81098.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           perfringens str. 13]
 gi|110675143|gb|ABG84130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens ATCC 13124]
 gi|169299612|gb|EDS81671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens C str. JGS1495]
 gi|170660869|gb|EDT13552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens E str. JGS1987]
 gi|170709985|gb|EDT22167.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713288|gb|EDT25470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens CPE str. F4969]
 gi|182380170|gb|EDT77649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           perfringens NCTC 8239]
          Length = 435

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 173/429 (40%), Gaps = 84/429 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD+Y++GQ  AK+++A+A+ N ++R     A+   EL   NILL+GPTG GK
Sbjct: 65  KPQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 125 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV------------ 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A  S + S      G  
Sbjct: 173 -ERAEKGII-------------------------YIDEID-KIARKSENPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V           ++         +  Q       ++          ++  +I  +     
Sbjct: 206 VQQA--------LLKILEGTTASVPPQGGRKHPHQEFIQ-------INTSNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R + + IG   E   +           +      +      +  G    
Sbjct: 251 DGIDKI--IEKRGTKSSIGFGAEVKGKSEK--------NVGELLKDIMPGDLLKFG---- 296

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV V L++L+      ILT  ++ L+ QYK+L + + + LDFTE++
Sbjct: 297 -----LIPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH--- 422
           + A+AD A+N  +     GAR L+ ++E  + DI F     +      I  E ++     
Sbjct: 352 LKAIADEAINRKT-----GARGLRAIVEETMMDIMFDIPSEENIVKATITEETIKDRKDP 406

Query: 423 -IGDFPSET 430
            +   P   
Sbjct: 407 ELEKLPEGE 415


>gi|255557853|ref|XP_002519956.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223541002|gb|EEF42560.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 698

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 173/431 (40%), Gaps = 88/431 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----------------DLRDE 50
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R    +                 D   E
Sbjct: 280 TPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLKKGPGEESGSSDAVDDDDNVE 339

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA
Sbjct: 340 LEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLSVA 399

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V+ +++  V            +D                             +++  
Sbjct: 400 EFNVQAAQQGIVY-----------ID-----------------------------EVDKI 419

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              ++  N             L ++    + +  +K  R   +                 
Sbjct: 420 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG---------------- 463

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D +  D+  ++   G  F+D    I  R   + IG             V  ++V      
Sbjct: 464 DNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAV------ 517

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             T  +L     A  ++    L+PE  GRFP+ V L +L +     +LT+ ++ L  QYK
Sbjct: 518 --TSSLLESVESADLIA--YGLIPEFIGRFPILVSLSALTEDQLVRVLTEPKNALGKQYK 573

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +L     + L FTE ++  +A  A+  N+     GAR L+ ++E  L +  +   D++  
Sbjct: 574 KLFSMNKVKLHFTEKALRLIAKKAMAKNT-----GARGLRAILESTLTEAMYEIPDVKTG 628

Query: 411 TVVIDAEYVRL 421
           +  +DA  V  
Sbjct: 629 SDRVDAVIVDE 639


>gi|306820815|ref|ZP_07454439.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551133|gb|EFM39100.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 416

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 176/424 (41%), Gaps = 81/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVG 65
            P+EI S LD YIIGQ+ AK+ ++++L N ++R     + +D++     NILL+GPTG G
Sbjct: 63  KPKEIKSFLDEYIIGQESAKKVLSVSLYNHYKRVYNLENKKDDIDIQKSNILLLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   +  ++   +   
Sbjct: 123 KTLLAQTLAKIMNVPFAIADATTLTEAGYVGEDVENILLKLIQASDYNIERAQTGIIY-- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 181 -----IDEIDKITRKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQGG-------- 225

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                              +  S  LI +DT    +I  +    
Sbjct: 226 ----------------------------------RKHPSQELIQIDT---TNIMFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +DE   I  R   N IG   E V +      E  +    Y  + T+ +L        
Sbjct: 249 FEGIDEI--IKKRMGKNSIGFGTEIVSK------EDVNKEKIYKKVQTEDLL-------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L++S    IL + +++L+ Q+K+L + + + L+  ++
Sbjct: 293 ---KYGLIPEFVGRLPIVASLDPLDESALVKILKEPKNSLVKQFKKLFELDNVELEIDDE 349

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E  + DI +      + + ++I+ + +     
Sbjct: 350 ALIEVARKAIERKT-----GARGLRSILEETMMDIMYDIPSRDDVSAILINKDCIIKKSE 404

Query: 425 DFPS 428
               
Sbjct: 405 PLIK 408


>gi|307566219|ref|ZP_07628667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           amnii CRIS 21A-A]
 gi|307345077|gb|EFN90466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           amnii CRIS 21A-A]
          Length = 410

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/419 (25%), Positives = 169/419 (40%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ +AKR +++++ N ++R Q    D   E+   NI++VG TG GK
Sbjct: 65  KPQEIKKYLDEYIIGQDEAKRYLSVSVYNHYKRLQQQKKDDGVEIEKSNIIMVGSTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 125 TLLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 181 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + +L    + +   K  R                   D D +H D+  ++   G 
Sbjct: 205 GVQQGMLKLLEGTIVNVPPKGGRKHP----------------DQDYIHVDTKNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +   VQ                     D    +       
Sbjct: 249 AFDGIERKIAQRLNTHVVGYNS--VQNVA----------------KIDKEDLMKYVLPQD 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  LN+   R IL   +++++ QY +L   +GI L FT+ +
Sbjct: 291 LKSFGLIPEIIGRLPVLTYLTPLNRDALRRILVQPKNSIVKQYIKLFDMDGIKLSFTDSA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F       K   +  +YV   +  
Sbjct: 351 LDYIVDKAVEYK-----LGARGLRSIVESVMMDAMFEIPSQNIKNFEVTKDYVIAQLNK 404


>gi|296116538|ref|ZP_06835148.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976750|gb|EFG83518.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 419

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 168/417 (40%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 64  TPREICNILDDYVIGQMHAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNIMLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   ++  +     
Sbjct: 205 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+GIG               G+ V +     +      +       
Sbjct: 250 AGLDKI--ISARGKGSGIGF--------------GADVQSPD---DRRTGAILRDIEPED 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + E + L F++++
Sbjct: 291 LLKFGLIPEFIGRLPVLATLEDLDEAALIEILTKPKNALVKQYARLFQMEDVKLTFSDEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A  A+   +     GAR L+ ++E +L    F    L+  + +V++ +     
Sbjct: 351 LSTIAQRAIARRT-----GARGLRAILESILLTTMFDLPGLKNVEEIVVNKDAAENK 402


>gi|319947979|ref|ZP_08022156.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea
           P4]
 gi|319438325|gb|EFV93268.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea
           P4]
          Length = 422

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 172/426 (40%), Gaps = 93/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
            P EI + LD Y++GQ  AKR +A+A+ N ++R ++ A L      EL   NIL++GPTG
Sbjct: 63  KPAEIHAFLDEYVVGQDAAKRNLAVAVYNHYKRIRVGAALGRGDGVELAKSNILMLGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A    + +      
Sbjct: 123 CGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDTKRAEMGIIY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + A                  S TR+V  + ++   +   E              
Sbjct: 183 IDEVDKIARKA------------ENPSITRDVSGEGVQQALLKILE-------------- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                 ASV      +   +         +   V   +  L +      I  D V R  +
Sbjct: 217 ---GTQASVPPQGGRKHPHQEFIQIDTSNVLFIVAGAFQGLEK------IVGDRVGRKGL 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                           + +++  +      E +  DL+                      
Sbjct: 268 GFGAE-----------VASKNELDTTDNFSEVMPEDLVKF-------------------- 296

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   + SL++     IL + ++ L+ QY  L + +G+
Sbjct: 297 ------------GLIPEFIGRLPVVATVTSLDREALVNILAEPKNALVKQYARLFEMDGV 344

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L+FT+D+++A+AD A+   +     GAR L+ +ME VL  + +      +   VV+  E
Sbjct: 345 ELEFTQDALEAVADQAILRGT-----GARGLRAIMEEVLLPVMYDIPGRDDVARVVVTGE 399

Query: 418 YVRLHI 423
            VR ++
Sbjct: 400 TVRDNV 405


>gi|157374681|ref|YP_001473281.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis
           HAW-EB3]
 gi|189044153|sp|A8FTI0|CLPX_SHESH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157317055|gb|ABV36153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           sediminis HAW-EB3]
          Length = 425

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 162/415 (39%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +PRE+ + LD Y+IGQ  AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPRELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLKNAGPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L +    R                    
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFVCGGAFSGLEKVIEQR-------------------- 262

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                        +G G G   +G              S     +  +    +  G    
Sbjct: 263 ---------SHTGTGIGFGAEVKGEDDK---------ASISDILMQVEPEDLVKYG---- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+ +    IL++ ++ +  Q+  L   EG+ L+F ED+
Sbjct: 301 -----LIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFDMEGVELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A    +     GAR L++++E +L DI +     +    VVID   V+
Sbjct: 356 LKAIALKAQTRKT-----GARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405


>gi|294788440|ref|ZP_06753683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
 gi|294483871|gb|EFG31555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella
           muelleri ATCC 29453]
          Length = 419

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 187/415 (45%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P E+V++L+ ++IGQ+ AK+++A+A+ N ++R   P  + + EL   NILL+GPTG GK
Sbjct: 65  TPAELVAQLNDHVIGQELAKKSLAVAVYNHYKRLNTPVEEGKVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VEQII  L++     V +++R  V    
Sbjct: 125 TLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLNKCDGDVAKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A         +      
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTLASVPPQGGRRNPN---- 231

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  + ID+DT    +I  +     
Sbjct: 232 --------------------------------------QKFIDVDT---TNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R    GIG               G++V +K  +IN    LF +     +
Sbjct: 251 AGLEKV--IRQRTEKGGIGF--------------GAAVHSKDENINVTE-LFESVEPEDL 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV   L+ L+++    ILT+ ++ L+ QY+ L   EG  L+F  D+
Sbjct: 294 IK-FGLIPELIGRLPVIATLEELDEAALVNILTEPKNALVKQYQALFAMEGAQLEFEHDA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + ++A +A+   +     GAR L++++ER L D  +   DL++   VV+    + 
Sbjct: 353 LVSIAKLAMKRKT-----GARGLRSIVERALLDTMYRLPDLKDVAKVVVTQSVID 402


>gi|84499431|ref|ZP_00997719.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
 gi|84392575|gb|EAQ04786.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis
           HTCC2597]
          Length = 422

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 162/402 (40%), Gaps = 80/402 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +P+EI   LD Y+IGQ+ AKR +++A+ N ++R    A      EL   NILL+GPTG G
Sbjct: 65  TPQEICDVLDDYVIGQKIAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V +++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVEKAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD    I  R  G+ +G   +    D   + E           + +    +  G   
Sbjct: 251 FAGLDRI--IAQRGKGSAMGFGADVRDNDERGVGE--------VFQDLEPEDLLKFG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + E   L FT+D
Sbjct: 298 ------LIPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDARLTFTDD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           ++ A++  A+   +     GAR L++++E +L D  F    +
Sbjct: 352 ALSAISRKAIERKT-----GARGLRSILEDILLDTMFELPSM 388


>gi|329957342|ref|ZP_08297862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           clarus YIT 12056]
 gi|328523055|gb|EGF50158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           clarus YIT 12056]
          Length = 414

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 180/426 (42%), Gaps = 80/426 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+Y+IGQ DAKR +++++ N ++R  Q   D   E+   NI++V
Sbjct: 59  LNLKELPKPVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V ++ +
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAQAEQ 178

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I          S TR+V  + ++ G +   E           + N 
Sbjct: 179 GIV-------FIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLE---------GSVVNV 222

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
              GG         +   + M     K I       +  + +  + RL + + V   +++
Sbjct: 223 PPQGG--------RKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL-NTNVVGYGAVR 273

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                        DK                   +++  +                    
Sbjct: 274 NTA--------SIDK------------------NNMMQYI-------------------- 287

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A    +   L+PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + +G+ 
Sbjct: 288 ---APQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRSILTEPKNSIIKQYVKLFEMDGVK 344

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F +   + + D AV        +GAR L++++E ++ D+ F      + + V+  +Y 
Sbjct: 345 LTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIMMDVMFEIPSEHKDSFVVTLDYA 399

Query: 420 RLHIGD 425
           R  +  
Sbjct: 400 RRQLEK 405


>gi|260909475|ref|ZP_05916179.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260636400|gb|EEX54386.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 410

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 174/420 (41%), Gaps = 82/420 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P +I + LD+YIIGQ +AKR +++++ N ++R + P  D   E+   NI++VG TG GK
Sbjct: 63  KPMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 123 TLMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                  +I+     SD  +        
Sbjct: 179 ------------------------------------FVDEIDKIARKSDNPSITRDVSGE 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L      +   K  R                   D D +H D+  ++   G 
Sbjct: 203 GVQQGLLKLLEGTTVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 246

Query: 247 VFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + KI  R + + +G                S  + +      D    +      
Sbjct: 247 AF-DGIERKIAQRLNTHVVGY--------------NSVQNVR----KIDKGDLMKYILPQ 287

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +   L+PEI GR PV  +L  L++   R IL + ++++I QY++L K +GI L F  +
Sbjct: 288 DLKSFGLIPEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++D + D AV        +GAR L++++E V+ D  F     + K+  +  +Y R  +  
Sbjct: 348 TLDYIVDKAVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKSFDVTLQYAREQLDK 402


>gi|188585729|ref|YP_001917274.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229463722|sp|B2A159|CLPX_NATTJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|179350416|gb|ACB84686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 420

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 81/424 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           M  +    P+EI   L+ YIIGQ++AK+A+++A+ N ++R    A  +D  E+   NILL
Sbjct: 56  MGFSEIPKPQEIYEILNDYIIGQEEAKKALSVAVYNHYKRVNNEAKKKDDVEIQKSNILL 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTGVGKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ 
Sbjct: 116 LGPTGVGKTLLAQTLAKILNVPFAMADATSLTEAGYVGEDVENILLKLIQSADYDVEKAE 175

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           +  V                                         EID +VA  + + S 
Sbjct: 176 KGIV--------------------------------------YIDEID-KVARKTDNPSI 196

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L         +   +                     + +  D+ 
Sbjct: 197 TRDVSGEGVQQALLRILEGTKASVPPQGGRKHP-----------------HQEFIQIDTT 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F D  DKI+    G         VQ                   +      
Sbjct: 240 NILFICGGAF-DGIDKIIQNRIGKKGLGFGAEVQSAK----------------DEGIGEI 282

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           ++           L+PE  GR PV   L +L++     IL + ++ L+ QY++L + +G+
Sbjct: 283 LSKVLPQDLLKFGLIPEFVGRIPVISSLDALDEDALVRILVEPKNALVKQYQKLFEIDGV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L+  ED++ A+A  A+  N+     GAR L+ ++E  L DI +    + +    +I  E
Sbjct: 343 ELEMQEDALRAIAREAIERNT-----GARGLRAIVEEHLNDIMYDLPSMDDVNKCIITEE 397

Query: 418 YVRL 421
            +  
Sbjct: 398 VIEK 401


>gi|315185395|gb|EFU19167.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6578]
          Length = 412

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 182/423 (43%), Gaps = 82/423 (19%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           +LT    +P+EI S LD+Y+IGQ  AK+ +++A+ N ++R      L +  EL   NILL
Sbjct: 54  ELTEELPTPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDVELEKSNILL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A N +  + 
Sbjct: 114 LGPTGSGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAE 173

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  V                                         EID ++A    +IS 
Sbjct: 174 RGIV--------------------------------------YIDEID-KIAKKGENISI 194

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  +   V     +   +   Q+               M  +   +I
Sbjct: 195 TRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQE---------------MIRIDTTNI 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +     V LD+   I +R S + +G   E   R    L E       Y  ++ D ++ 
Sbjct: 240 LFIAGGAFVGLDKI--IESRVSEHPMGFGAEVKSRREKNLAE------LYAQMHPDDLIK 291

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GRFP+ V L+ L K D   I+ +  ++++ QYK  +K + +
Sbjct: 292 F-----------GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L   +++++A+AD+A++  +     GAR ++ + E ++ D+ +    +   K VVI  +
Sbjct: 341 DLVVEDEAVEAIADLAIHRKT-----GARGIRAIFEHIMMDVMYEIPSIPGPKRVVITRD 395

Query: 418 YVR 420
            V+
Sbjct: 396 VVQ 398


>gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
 gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193]
          Length = 422

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 169/432 (39%), Gaps = 91/432 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           SP++I   LD Y+IGQ  AK+ +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  SPKDICEVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKAGNDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V   
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIV--- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D ++   S + S      G 
Sbjct: 182 -----------------------------------YIDEVD-KITRKSENPSITRDVSGE 205

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 206 GVQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD    I  R  G+ +G   +    D   + E                       F 
Sbjct: 251 FAGLDRI--IAQRGKGSAMGFGADVRNNDDRGVGE----------------------IFQ 286

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P D     L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L
Sbjct: 287 ELEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEETEL 346

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           DFT++++ A+A  A+   +     GAR L++++E +L +  F    ++  T VV++ E V
Sbjct: 347 DFTDEALSAIAKRAIERKT-----GARGLRSILEDLLLETMFELPGMESVTKVVVNEEAV 401

Query: 420 RLHIGDFPSETD 431
                     TD
Sbjct: 402 TSDAQPLMIHTD 413


>gi|295109357|emb|CBL23310.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           obeum A2-162]
          Length = 437

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 166/416 (39%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASRNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +        R Q 
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIE-------RAQY 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I   + I          S TR+V  + ++   +   E  +                   
Sbjct: 179 GIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGG----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  +    + +  D+  ++   G 
Sbjct: 228 --------------------------------------RKHPHQEFIQIDTTNILFICGG 249

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I AR     IG   +   ++   + E           +     FI  G   
Sbjct: 250 AF-DGIEKTIEARQDTKSIGFGADVSVQEERNIGE--------VLKDVMPEDFIKYG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L++     IL + +++L  QY +L + +G+ L+F ED
Sbjct: 298 ------LIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFEED 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++  +A  ++   +     GAR L+++ME+ L D+ +    D       I  + V 
Sbjct: 352 ALKEVARKSLERKT-----GARGLRSIMEKSLMDLMYRTPSDNTICKCTITKDAVD 402


>gi|327439425|dbj|BAK15790.1| ATP-dependent protease Clp, ATPase subunit [Solibacillus silvestris
           StLB046]
          Length = 423

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 174/417 (41%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI++ L  Y+IGQ+ AK+A+A+A+ N ++R    + + D EL   NI+L+GPTG GK
Sbjct: 63  KPKEILNILGEYVIGQERAKKALAVAVYNHYKRINSNSKIDDVELSKSNIVLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDI------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -ERAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   Q+                  +   +I  +     
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHPHQEFL---------------QIDTSNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++    I  R     IG                   ST+   I+ D  +        +
Sbjct: 249 DGIETI--IKRRQGEKVIGF-----------------ASTQNKGIDEDASIMSQLIPEDL 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L+ LN      ILT+ ++ L  QY+++++ + + L+F +D+
Sbjct: 290 LK-FGLIPEFIGRLPVLATLEQLNVDALVQILTEPKNALAKQYQKMLELDDVELEFEDDA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +  +A +A+   +     GAR L++++E  + D+ F     ++ K  +I AE +R  
Sbjct: 349 LVEIAKLAIERKT-----GARGLRSIIEATMLDVMFELPSREDIKKCIITAETIRDK 400


>gi|166369014|ref|YP_001661287.1| ATP-dependent protease ATP-binding subunit ClpX [Microcystis
           aeruginosa NIES-843]
 gi|189044139|sp|B0JL96|CLPX_MICAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166091387|dbj|BAG06095.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
           NIES-843]
          Length = 444

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 167/425 (39%), Gaps = 86/425 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILL 58
            PREI   LD Y+IGQ +AK+ +++A+ N ++R +            +   EL   NILL
Sbjct: 78  KPREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPEDSIELQKSNILL 137

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +                                         EID ++A  S + S 
Sbjct: 198 RGII--------------------------------------YIDEID-KIARKSENTSI 218

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   +     +   +   Q C                 +   +I
Sbjct: 219 TRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------QIDTSNI 263

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +     V LD+   I  R     +G  + G  +     V                 L 
Sbjct: 264 LFICGGAFVGLDKV--IDQRLGKKSMGFIQPGDGQASKDKVAA--------------GLL 307

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                  + +   ++PE  GR P+   L  L++     ILT   + L+ QY++L+K + +
Sbjct: 308 KQMTPDDLVK-FGMIPEFVGRIPILAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNV 366

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F  D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ K  +I  E
Sbjct: 367 QLEFKSDAVLAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVKRCLITRE 421

Query: 418 YVRLH 422
            V   
Sbjct: 422 MVEKR 426


>gi|331086219|ref|ZP_08335301.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406378|gb|EGG85892.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 425

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 171/415 (41%), Gaps = 79/415 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +A+++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  +    +    
Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGIIY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  +                   
Sbjct: 181 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG----------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + +       I       +  + +      I    V + SI    N  +
Sbjct: 226 ------RKHPHQELIPIDTTNILFICGGAFEGIEK------IIESRVDKKSIG--FNSKM 271

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              +E DK                  + L  ++    V  K+G I               
Sbjct: 272 TGANEHDK-----------------DKLLSQVLPQDLV--KFGLI--------------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F ED+
Sbjct: 298 -------PELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +  +A ++++  +     GAR L+ ++E V+ D  F    D + KT  I    V+
Sbjct: 351 LKEIAKISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 400


>gi|319651747|ref|ZP_08005873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           2_A_57_CT2]
 gi|317396566|gb|EFV77278.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp.
           2_A_57_CT2]
          Length = 421

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 177/415 (42%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+++++A+ N ++R    + + + EL   NI ++GPTG GK
Sbjct: 63  KPAEIRDILDEYVIGQDQAKKSLSVAVYNHYKRINSNSKIDEVELSKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +  Q+++ P    + V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGSDQNQKEIEPKDLLAKVLPE------DLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT  ++ L+ QY+++++ + + LDF E 
Sbjct: 293 -----GLIPEFIGRLPVIASLSQLDEAALIEILTKPKNALVKQYQKMLELDDVELDFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++ +A  A+   +     GAR L++++E ++ D+ F     ++ K  +I  E V
Sbjct: 348 ALEEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIKKCIITKETV 397


>gi|153813469|ref|ZP_01966137.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
 gi|149830413|gb|EDM85505.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174]
          Length = 437

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/416 (23%), Positives = 167/416 (40%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASKNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +        R Q 
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIE-------RAQY 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I   + I          S TR+V  + ++   +   E  +                   
Sbjct: 179 GIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGG----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  +    + +  D+  ++   G 
Sbjct: 228 --------------------------------------RKHPHQEFIQIDTTNILFICGG 249

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I AR     IG   +   ++   + E           +     FI  G   
Sbjct: 250 AF-DGIEKTIEARQDTKSIGFGADVSVQEERNIGE--------ILKDVMPEDFIKYG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L++     IL + +++L  QY +L + +G+ L+F E+
Sbjct: 298 ------LIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFQEE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++  +A  ++   +     GAR L+++ME+ L D+ +    D      +I  + V 
Sbjct: 352 ALKEVARKSLERKT-----GARGLRSIMEKSLMDLMYRTPSDNTICKCIITKDAVD 402


>gi|90407419|ref|ZP_01215603.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
 gi|90311450|gb|EAS39551.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
          Length = 429

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 166/424 (39%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 70  TPHEIRANLDDYVIGQDQAKKVLSVAVYNHYKRLKYGDVANGVELSKSNILLIGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+        +++R  +    
Sbjct: 130 TLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDAEKAQRGIIY--- 186

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 187 ----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVASIPPQ----------- 229

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +  ++        KI       +  L           DT+    +   +  G 
Sbjct: 230 ----GGRKHPNQEFIQVDTSKILFICGGAFSGL-----------DTIIEQRVDTGQGIGF 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASGAF 304
                           G  V  E  +  L  + +       TKYG               
Sbjct: 275 ----------------GATVKDEDSKASLSEIFKKVEPQDLTKYG--------------- 303

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L++     ILT  ++ +  QY  L + E + L+F  
Sbjct: 304 -------LIPEFIGRLPVVATLTELDEEALVEILTVPKNAITKQYSALFELEDVELEFRP 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++  +A  A+   +     GAR L++++E VL D  +    +Q+   VV+D + ++ + 
Sbjct: 357 KALKEMAKKAMKRKT-----GARGLRSIVESVLLDTMYDLPSMQDVSKVVVDEKVIQGNA 411

Query: 424 GDFP 427
               
Sbjct: 412 QPLI 415


>gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 418

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 158/407 (38%), Gaps = 89/407 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ+ AK+ +++A+ N ++R        + E+   NI+LVGPTG GK
Sbjct: 63  TPREICKVLDDYVIGQEHAKKVLSVAVHNHYKRLAHGGKTGEVEIAKSNIMLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 179 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 204 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTSNILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R  G+GIG   E    D                                
Sbjct: 249 AGLEKI--IAGRGKGSGIGYGAEVRGPDERR----------------------TGQILRE 284

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L++     ILT  ++ L+ QY+ L + E   L 
Sbjct: 285 VEPEDLLKFGLIPEFIGRLPVVATLDDLDEKALVEILTKPKNALVKQYQRLFEMEATKLT 344

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           FT+D++ ++A+ A+   +     GAR L+++ME +L    F    L 
Sbjct: 345 FTDDALKSVANRAIQRKT-----GARGLRSIMEGILLGTMFDLPGLD 386


>gi|296331631|ref|ZP_06874100.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675410|ref|YP_003867082.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151226|gb|EFG92106.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413654|gb|ADM38773.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 420

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +    DL      S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGGDNKAADLEKEDLLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+
Sbjct: 293 -----GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATV 397


>gi|46390353|dbj|BAD15818.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           (CLPX) [Oryza sativa Japonica Group]
          Length = 666

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 175/446 (39%), Gaps = 96/446 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R                       D   
Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--------------EIGYV 95
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T              + GYV
Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 350

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE I+  L+ VA   V+ +++  V            +D +   T  ++   +  + L
Sbjct: 351 GEDVESILYKLLAVADFNVQAAQQGMVY-----------IDEVDKITKKADVFNMQAESL 399

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
                                 N             L ++    + +  +K  R   +  
Sbjct: 400 ----------------------NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG- 436

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                          D +  D+  ++   G  F+D    I  R   + IG          
Sbjct: 437 ---------------DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMR 481

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
              +  + V++     + +    IA G         L+PE  GRFP+ V L +LN+    
Sbjct: 482 AGGISSAQVTSSLLE-SVESGDLIAYG---------LIPEFIGRFPILVSLAALNEDQLV 531

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            +L + ++ L  Q+K+L     + L FT+ ++  +A  A++ N+     GAR L+T++E 
Sbjct: 532 QVLMEPKNALGKQFKKLFSMNNVKLHFTDAALRIIAKKAMSKNT-----GARGLRTILEN 586

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRL 421
           +L D  +   D +     IDA  V  
Sbjct: 587 ILMDAMYEIPDAKSGEKRIDAVVVDE 612


>gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
 gi|225206815|gb|EEG89169.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758]
          Length = 416

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 172/414 (41%), Gaps = 79/414 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL+VGPTG GK
Sbjct: 63  LKPEEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMVGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 123 TFLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDI------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+                            EID ++   S + S      G  
Sbjct: 171 -ERAEHGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+               M  +   +I  +     
Sbjct: 204 VQQALLKILEGTIANVPPQGGRKHPQQE---------------MIQIDTTNILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D+   I  R     IG   +  QR                    D    +       
Sbjct: 249 EGIDKI--IENRIDKKSIGFEAQIAQRHE-----------------EDIDRLLQQILPQD 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L+K D   ILT+ ++ ++ QY++L++ + + L+F +++
Sbjct: 290 LVKFGLIPELVGRVPVTVSLELLDKEDLIRILTEPKNAIVKQYQKLLELDDVELEFDKEA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++A+A+ ++   +     GAR L+ +ME V+ DI + A   +  K  ++  E V
Sbjct: 350 LEAIAETSLKRKT-----GARGLRAIMENVMMDIMYKAPSDENLKYCLVTKEAV 398


>gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit [Desulfococcus
           oleovorans Hxd3]
 gi|238686897|sp|A8ZXB8|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus
           oleovorans Hxd3]
          Length = 417

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 171/423 (40%), Gaps = 90/423 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
            +P+EI + LD Y+I Q+ AK+A+A+A+ N ++R        D E+   NILL+GPTG G
Sbjct: 61  LAPKEIKTLLDDYVIEQERAKKALAVAVYNHYKRLDTSVKTSDVEIQKSNILLIGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V +++R  V   
Sbjct: 121 KTLLAQTLARFLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDVEKAQRGIV--- 177

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                   +I+     SD  +       
Sbjct: 178 -------------------------------------YVDEIDKIAQRSDNPSITRDVSG 200

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L ++    + S   K  R   Q                 D V  D+  ++   G
Sbjct: 201 EGVQQALLKIMEGTLASVPPKGGRKHPQ----------------QDFVKVDTTNILFICG 244

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F    DK++ R  G                       +  +GS  T       + +  
Sbjct: 245 GTFTG-LDKLIERRVGEK---------------------TIGFGSKVTGEKDKNYNQSLQ 282

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +  P D     L+PE  GR P+ V L  L++     ILT+ ++ LI Q+++L + EG+ L
Sbjct: 283 LVEPQDLIRFGLIPEFLGRLPIIVTLDELSEESLVKILTEPKNALIKQFQKLFEIEGVNL 342

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            FT+ ++  +A +A+   S     GAR L++++E  + D+ +     +  K  VI  E +
Sbjct: 343 RFTDSALATVASLAMKRKS-----GARGLRSILESCMLDLMYEIPSQEGVKECVIGEEVI 397

Query: 420 RLH 422
           +  
Sbjct: 398 KKK 400


>gi|163781837|ref|ZP_02176837.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883057|gb|EDP76561.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 413

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 175/427 (40%), Gaps = 84/427 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNI 56
           + L+   +P  I S LD Y+IGQ+ AK+ +++A+ N ++R +      D    E+   NI
Sbjct: 55  LDLSDLPTPERIKSILDEYVIGQERAKKVLSVAVYNHYKRIKAKEAGLDLDGVEVEKSNI 114

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+      V  
Sbjct: 115 LLIGPTGSGKTLMAKTLAKILNVPFAIADATSLTEAGYVGEDVENVLTRLLQNCGYDVDA 174

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +++  V                                         EID     +  + 
Sbjct: 175 AQKGIV--------------------------------------YIDEIDKVAKKSGINP 196

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           S      G  V    L  +   V     +   +   Q+                  +   
Sbjct: 197 SITRDVSGEGVQQSLLKIIEGTVANVPPQGGRKHPHQEFI---------------QIDTT 241

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            I  +     V L+E  K       + IG S  G +  +  + E  +V      +  D +
Sbjct: 242 DILFICGGAFVGLEEIIK-------HRIGKSTMGFESSIKKVEEEDNV---VALVEPDDL 291

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           +              L+PE  GR PV   L  L + D   IL + ++ L+ QYK+L + +
Sbjct: 292 IKF-----------GLIPEFVGRLPVITTLDELTQEDLVRILVEPKNALVKQYKKLFEID 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L+FTE+++  +A+ A+   +     GAR L+ ++E V+ +I F    +++ K V+ID
Sbjct: 341 GVELEFTEEALKEIANEAIRRKT-----GARGLRAILEDVMTEIMFEIPSMRDVKKVIID 395

Query: 416 AEYVRLH 422
            + V   
Sbjct: 396 KDTVAKK 402


>gi|88800032|ref|ZP_01115602.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
 gi|88777158|gb|EAR08363.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297]
          Length = 392

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/413 (26%), Positives = 169/413 (40%), Gaps = 80/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y+IGQ  AK  +++A+ N ++R Q      D EL   NILL+GPTG GKT
Sbjct: 34  PSEIRSTLDEYVIGQDRAKMVLSVAVYNHYKRLQYGEANSDVELSKSNILLIGPTGSGKT 93

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 94  LLAETMARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY---- 149

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 150 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 194

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V   +I  +      
Sbjct: 195 --------------------RKHPQQEFL---------------QVDTANILFICGGAFA 219

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            L++   I  R    GIG + E  ++D                 +      IA+      
Sbjct: 220 GLEKV--IQNRTDKGGIGFNAEVKKKD-----------------DRKLGSVIANVEPEDL 260

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L+++    ILT  +++L+ QY++L + E + LD  E ++
Sbjct: 261 VKYGLIPEFIGRLPVVATLTELDEAALVQILTTPKNSLVKQYQKLFEMESVELDIRESAL 320

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            A+A+ A+  N+     GAR L++++E VL D  +        T VVID   +
Sbjct: 321 KAVANKAMERNT-----GARGLRSILENVLLDTMYRVPSEDNVTKVVIDESVI 368


>gi|307151648|ref|YP_003887032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7822]
 gi|306981876|gb|ADN13757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7822]
          Length = 446

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/430 (24%), Positives = 173/430 (40%), Gaps = 97/430 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILL 58
            PREI   LD Y+IGQ +AK+ +++A+ N ++R       R          EL   NILL
Sbjct: 81  KPREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRLSDIQSKRSGTGSIDDPIELQKSNILL 140

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 141 MGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 200

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +                                         EID ++A  S + S 
Sbjct: 201 RGII--------------------------------------YIDEID-KIARKSENPSI 221

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   +     +   +   Q C                 +   +I
Sbjct: 222 TRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI---------------QIDTSNI 266

Query: 239 QMVENYGIVFLDEF--DKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
             +     V LD+    ++  +  G    G G +++    DLL ++E   +  K+G I  
Sbjct: 267 LFICGGAFVGLDKIVEQRLGKKSMGFIQPGDGNAKDKRTADLLKVIEPDDL-VKFGMI-- 323

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                               PE  GR PV   L  L++     ILT   + L+ QY++L+
Sbjct: 324 --------------------PEFVGRIPVMASLDPLDEEALIAILTQPRNALVKQYQKLL 363

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           K + + L+F  D++ A+A  A    +     GAR L+ ++E ++ ++ +     ++ K  
Sbjct: 364 KMDNVQLEFKSDAVRAIAQEAYRRKT-----GARALRGIVEELMLEVMYELPSRKDVKRC 418

Query: 413 VIDAEYVRLH 422
           +I  E V   
Sbjct: 419 LITREMVEKR 428


>gi|328554439|gb|AEB24931.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens TA208]
 gi|328912843|gb|AEB64439.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens LL3]
          Length = 420

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +    DL      S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + LDF ++
Sbjct: 293 -----GLIPEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATV 397


>gi|302382858|ref|YP_003818681.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193486|gb|ADL01058.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 420

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 161/404 (39%), Gaps = 81/404 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFIVGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA-FH 305
             L++   I AR +G  IG                     K   ++      I  G    
Sbjct: 251 AGLEKV--IAARGAGASIGFGA------------------KVKEVDERRTGDILKGVEPD 290

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT+ ++ L+ QYK L + E + L FT+D
Sbjct: 291 DLMRFGLIPEFIGRLPVLATLEDLDEKALVTILTEPKNALVKQYKRLFEMENVGLTFTDD 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +++A+A  A+   +     GAR L++++E +L +  F       
Sbjct: 351 ALNAVAKKAITRKT-----GARGLRSILEGILLETMFELPTFDG 389


>gi|325474231|gb|EGC77419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Treponema
           denticola F0402]
          Length = 415

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 180/414 (43%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P+E+   LD Y+IGQ+ AKR +++A+ N ++R   P  +    +   N+LL+GPTG GK
Sbjct: 63  TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++E+    +    
Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEAEMGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------FIDEID-KISRKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +         +   +   Q               DM  +   +I  +     
Sbjct: 204 VQQALLKIIEGTSASVPPQGGRKHPNQ---------------DMLKIDTTNILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           V LD+   + AR S   IG   E      +  +   +++  Y  ++ D ++         
Sbjct: 249 VGLDKI--VEARISTKPIGFGAE------VKKLSEKNLTELYDQVSPDDLVKF------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR P++V L  L K D   IL + ++ +I Q++   K + + L F +D+
Sbjct: 294 ----GLIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           I A+A  A++ N+     GAR L++++E+++ D  F A  ++  K ++I+ + +
Sbjct: 350 ITAIAQQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398


>gi|109899440|ref|YP_662695.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas
           atlantica T6c]
 gi|123170858|sp|Q15R47|CLPX_PSEA6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|109701721|gb|ABG41641.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoalteromonas atlantica T6c]
          Length = 425

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 173/415 (41%), Gaps = 78/415 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHDGVELGKSNILLMGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQ----------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     D++I+        I        
Sbjct: 227 ----GGRKHPQQEFLQVDTSKILFICGGAFAGL-----DKVIEQRAHTGTGIGFG----- 272

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                      +DS N    S+EG   +LL  VE   +  KYG I               
Sbjct: 273 --------TAIKDSSNK---SKEG---ELLKKVEPEDL-VKYGLI--------------- 302

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR PV   L+ L++     IL + +++L  QY  L   E   L+F ED+
Sbjct: 303 -------PEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFREDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           + A+A  A++  +     GAR L++++E VL D  +    +     VV+D   +R
Sbjct: 356 LQAIAKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405


>gi|154686958|ref|YP_001422119.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           amyloliquefaciens FZB42]
 gi|166214755|sp|A7Z7B2|CLPX_BACA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154352809|gb|ABS74888.1| ClpX [Bacillus amyloliquefaciens FZB42]
          Length = 420

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +    DL      S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + L+F ++
Sbjct: 293 -----GLIPEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATV 397


>gi|304389726|ref|ZP_07371685.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326902|gb|EFL94141.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 420

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/418 (26%), Positives = 174/418 (41%), Gaps = 84/418 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R  +  
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAERGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 182 ------IDEIDKISRKGENASITRDVSGEGVQQALLKIIE-------------------- 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K       +                  +   SI  +   
Sbjct: 216 ---------GTTASVPPQGGRKHPHQEFIE------------------IDTSSILFIAAG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LDE  K  AR      G   +                    S+     LF      
Sbjct: 249 AFAGLDEIVK--ARLGQRSTGFGSD------------------LKSVKEHGDLFAKVTPD 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+
Sbjct: 289 DLHK-FGLIPEFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
            +I A+A++A N  +     GAR L T+ME  L  I F     ++   V+I+AE V  
Sbjct: 348 AAIHAVAELAENRGT-----GARSLSTLMENTLSQIMFDLPSREDVAEVIIEAECVSE 400


>gi|308174520|ref|YP_003921225.1| protein unfolding ATPase [Bacillus amyloliquefaciens DSM 7]
 gi|307607384|emb|CBI43755.1| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus amyloliquefaciens DSM 7]
          Length = 417

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +    DL      S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ + + LDF ++
Sbjct: 293 -----GLIPEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 348 ALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATV 397


>gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
 gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787]
          Length = 426

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 168/415 (40%), Gaps = 79/415 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 73  LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +            
Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDI------------ 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE  I+             +   K  R  E      D+        +        AS
Sbjct: 181 -ERAEHGII-----------YLDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVAS 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V      +   + +       I       +  L +      I    + R S+      G 
Sbjct: 229 VPPQGGRKHPHQELIQIDTTNILFICGGAFEGLDK------IIETRMDRKSMGFNAEVGN 282

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D  D+++++     +                      K+G                 
Sbjct: 283 HHEDNVDRLLSQVLPQDL---------------------VKFG----------------- 304

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L+F +++
Sbjct: 305 -----LIPELVGRVPVNVTLEMLDRDALIRILTEPKSAIVKQYQKLLELDGVELEFDKEA 359

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           ++ +AD ++   +     GAR L+ +ME V+ D  +        KT  I  E V 
Sbjct: 360 LEKIADTSLARKT-----GARGLRAIMENVMMDTMYHVPSNDRIKTCRITKEAVE 409


>gi|307718288|ref|YP_003873820.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6192]
 gi|306532013|gb|ADN01547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           thermophila DSM 6192]
          Length = 412

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/422 (25%), Positives = 181/422 (42%), Gaps = 82/422 (19%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           +LT    +P+EI S LD+Y+IGQ  AK+ +++A+ N ++R      L +  EL   NILL
Sbjct: 54  ELTEELPTPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDVELEKSNILL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A N +  + 
Sbjct: 114 LGPTGSGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAE 173

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  V                                         EID ++A    +IS 
Sbjct: 174 RGIV--------------------------------------YIDEID-KIAKKGENISI 194

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  +   V     +   +   Q+               M  +   +I
Sbjct: 195 TRDVSGEGVQQALLKIVEGTVAAVPPQGGRKHPNQE---------------MIRIDTTNI 239

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +     V LD+   I +R S + +G   E   R    L E       Y  ++ D ++ 
Sbjct: 240 LFIAGGAFVGLDKI--IESRVSEHPMGFGAEVKSRREKNLAE------LYAQMHPDDLIK 291

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GRFP+ V L+ L K D   I+ +  ++++ QYK  +K + +
Sbjct: 292 F-----------GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L   +++++A+AD+A++  +     GAR ++ + E ++ D+ +    +   K VVI  +
Sbjct: 341 DLVVEDEAVEAIADLAIHRKT-----GARGIRAIFEHIMMDVMYEIPSIPGPKRVVITRD 395

Query: 418 YV 419
            V
Sbjct: 396 VV 397


>gi|15615614|ref|NP_243918.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           halodurans C-125]
 gi|20137994|sp|Q9K8F4|CLPX_BACHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|10175674|dbj|BAB06771.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Bacillus halodurans C-125]
          Length = 424

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 175/427 (40%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+++++A+ N ++R    +   + EL   NI ++GPTG GK
Sbjct: 63  KPHEIREILDDYVIGQDLAKKSLSVAVYNHYKRINSMSKSEEVELSKSNICMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L         +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTTASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   E  Q +L P    S V  +      D + F       
Sbjct: 247 AF-DGIEQIIKRRLGKKVIGFGSEVKQDELKPGEYLSKVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L++     ILT  ++ L+ QYK+L++ + + L+FT++
Sbjct: 293 -----GLIPEFIGRLPVISSLQPLDEEALIEILTKPKNALVKQYKKLLELDDVNLEFTDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E +  D+ F      + +T +I  + V     
Sbjct: 348 ALREIARKAIERKT-----GARGLRSIIEGLTLDVMFDLPARDDVETCIIHDKCVTEGEP 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PILKMKD 409


>gi|116618615|ref|YP_818986.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271185|sp|Q03W09|CLPX_LEUMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116097462|gb|ABJ62613.1| ATP-dependent protease Clp, ATPase subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 416

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 174/422 (41%), Gaps = 90/422 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R        L  EL   NI L+GPTG G
Sbjct: 64  TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + R  +   
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVAAAERGII--- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A  S ++S      G 
Sbjct: 181 -----------------------------------YVDEID-KIAKKSENVSITRDVSGE 204

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+                  V+  +I  +    
Sbjct: 205 GVQQALLKMLEGTTASVPPQGGRKHPQQELI---------------QVNTTNILFIVGGA 249

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +D    I  R     IG   +  +                 ++N D+IL       H
Sbjct: 250 FAGIDTI--IKERLGERVIGFGSDANENAE--------------ALNDDNIL-------H 286

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             +P D     L+PE  GR P+   L  L  SD   ILT+ ++ LI QY  L+  + + L
Sbjct: 287 HVQPEDMTKFGLIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVEL 346

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +F  D++DA+A VA+  ++     GAR L++++E V++D+ F      +   V+I    V
Sbjct: 347 EFQPDALDAMASVAIKRHT-----GARGLRSIIENVMKDVMFDIPSRDDVAKVIITKASV 401

Query: 420 RL 421
             
Sbjct: 402 EQ 403


>gi|238026974|ref|YP_002911205.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           glumae BGR1]
 gi|237876168|gb|ACR28501.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae
           BGR1]
          Length = 423

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 177/432 (40%), Gaps = 92/432 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I  R    GIG               G++V +K            +     
Sbjct: 252 AF-DGLEKVITDRTEKTGIGF--------------GATVKSKQER--------DSGEVLR 288

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P D     L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L
Sbjct: 289 EVEPEDLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVEL 348

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +   D++ A+A  A+   +     GAR L++++E+ L D+ +    L+    V+ID   +
Sbjct: 349 ELRPDALQAVARKAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVI 403

Query: 420 RLHIGDFPSETD 431
                      D
Sbjct: 404 DGDGKPLLIYED 415


>gi|56964401|ref|YP_176132.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus clausii
           KSM-K16]
 gi|61211410|sp|Q5WEN9|CLPX_BACSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56910644|dbj|BAD65171.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           clausii KSM-K16]
          Length = 423

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/427 (24%), Positives = 174/427 (40%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI S LD Y+IGQ++AK+++++A+ N ++R    +   D EL   NI L+GPTG GK
Sbjct: 63  KPNEICSILDDYVIGQREAKKSLSVAVYNHYKRINSMSRSEDVELSKSNITLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L         +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTTASVPPQGGRKHP-----------------HQEFIQIDTTNVLFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   +  ++D L   E                 +++     
Sbjct: 247 AF-DGIEQIIKRRLGKKVIGFGTDDAKQDDLKPGE-----------------YLSKVLPE 288

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+      ILT  ++ L+ QY++L++ + + L+FTED
Sbjct: 289 DLLRFGLIPEFIGRLPIISSLSPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTED 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A+ A+   +     GAR L++++E ++ D+ F     ++    +I    V     
Sbjct: 349 ALREIANKAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDAVKCIIHGACVTDDAP 403

Query: 425 DFPSETD 431
                 D
Sbjct: 404 PILKSAD 410


>gi|47566662|ref|ZP_00237484.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9241]
 gi|47556692|gb|EAL15024.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9241]
          Length = 419

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  V+  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCVLTKETV 397


>gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
 gi|167660964|gb|EDS05094.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704]
          Length = 419

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 174/415 (41%), Gaps = 79/415 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ++AK+ +++A+ N ++R     D+  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMAQKDMGVELNKSNILMLGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  +    +    
Sbjct: 126 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAEYGIIY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +    ++  VA+               
Sbjct: 183 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKI--VEGTVANVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  +    + +  D+  ++   G 
Sbjct: 228 --------------------------------------RKHPHQELIQIDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F +  DKIV +     I     G   D+    E             D    +A      
Sbjct: 250 AF-EGIDKIVEKR----IDQKSIGFNADIAKKHEN------------DVDRLLAQVLPQD 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV V L+ L+K     IL++ ++ ++ QY++L++ +G+ L F + +
Sbjct: 293 LVKFGLIPELVGRMPVTVALEMLDKKALMQILSEPKNAIVKQYQKLLELDGVDLIFDQKA 352

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++A+A+ ++   +     GAR L+ +ME ++ DI + A  D   K+  I  + V+
Sbjct: 353 LEAIAETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKSCRITEDVVK 402


>gi|167042803|gb|ABZ07521.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism
           HF4000_ANIW137I15]
          Length = 414

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 180/423 (42%), Gaps = 80/423 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           ++     P+E+ + LD +++GQ+ AKR +++A+ N ++R +   DL D E+   N+LL+G
Sbjct: 57  EMKHLPKPKEVKATLDEFVVGQELAKRVLSVAIHNHYKRIEANVDLNDVEIQKSNVLLIG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ +AR+   PF  V+ T  TE GYVG +VE II  L+  A   V+ + R 
Sbjct: 117 PTGSGKTLLAQTMARILDVPFAIVDATTLTEAGYVGEDVENIILKLLQNADYDVQRAERG 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +    I+  VA+         
Sbjct: 177 IIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKI--IEGTVANVPPQGG--- 224

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                                       +   Q+             + +DT H   +  
Sbjct: 225 ---------------------------RKHPHQE------------FLQVDTAH---VFF 242

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           V       LD+   I  R     +G   E   RD + + E       +  +  + +L   
Sbjct: 243 VCGGAFTGLDQI--IQRRVGSRSMGFEAEIRSRDDMSIGEI------FSKVQPEDLL--- 291

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV  +L  L++     +L + ++ L+ QYK L + E + L
Sbjct: 292 --------KYGLIPEFVGRLPVIAYLNELDEEALVQVLCEPKNALVKQYKRLFEFENVAL 343

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            FT++S+ A+A  A+   +     GAR L++++E ++ D  +      + K  V+  E +
Sbjct: 344 RFTDESLVAIAREAMKRKT-----GARGLRSILEEIMLDTMYEIPSRADVKECVVTEEVI 398

Query: 420 RLH 422
            L 
Sbjct: 399 SLR 401


>gi|15895897|ref|NP_349246.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           acetobutylicum ATCC 824]
 gi|21263476|sp|Q97FT7|CLPX_CLOAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15025666|gb|AAK80586.1|AE007761_5 ATP-dependent protease Clp, ATPase subunit ClpX [Clostridium
           acetobutylicum ATCC 824]
 gi|325510049|gb|ADZ21685.1| ATP-dependent protease ATP-binding subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 432

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 182/429 (42%), Gaps = 87/429 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P EI   LD+Y++GQ+DAK+++++A+ N ++R        D  EL   NILL+GPTG G
Sbjct: 62  KPSEIKDYLDQYVVGQEDAKKSLSVAVYNHYKRINSNLSNNDDIELQKSNILLLGPTGCG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 122 KTFLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDV----------- 170

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 171 --ERAEKGII-------------------------YIDEID-KIARKSENPSITRDVSGE 202

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +                     + +  ++  ++   G
Sbjct: 203 GVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQINTTNILFICG 245

Query: 246 IVFLDEFDKIV---ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             F D  DKI+    R S  G G S +  Q+  +  +    +         D + F    
Sbjct: 246 GAF-DGVDKIIENRTRVSTIGFGASIQSKQQKDIGAILKKIMPG-------DLLKF---- 293

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P+ V L SL++     +L++ ++ L+ QY++L++ + + L+F
Sbjct: 294 --------GLIPEFIGRLPIIVTLNSLDQGALVKVLSEPKNALVKQYEKLLQMDNVELEF 345

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            + ++ A+A  A++ ++     GAR L+ ++E +++DI F     ++ K V++    +  
Sbjct: 346 KDGALKAIASEAISRST-----GARGLRAIVEDIMKDIMFDIPSREDVKKVIVTENTINT 400

Query: 422 HIGDFPSET 430
              +   E 
Sbjct: 401 KQPELVLEE 409


>gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
 gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM
           14600]
          Length = 419

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+E+ + LD Y+IGQ +AK+ +++A+ N ++R         EL   N+L++GPTG GKT
Sbjct: 73  KPKELKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMRGDKTDVELQKSNVLMLGPTGSGKT 132

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR  G PF   + T  TE GYVG +VE II  L+  A   V +++   +     
Sbjct: 133 LLAQTLARTLGVPFAIADATTLTEAGYVGEDVENIILKLIQAADYDVEKAQLGIIY---- 188

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  +D +   T  S    + R             D+        +        ASV
Sbjct: 189 -------IDEIDKITKKSENVSITR-------------DVSGEGVQQALLKIIEGTMASV 228

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   + +       I       +  L +      I    +   S+    N    
Sbjct: 229 PPQGGRKHPQQELIQIDTTNILFICGGAFDGLEK------IIEQRIEAGSMGFGAN---- 278

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  IV + +     + R+ + +D            K+G I                
Sbjct: 279 -------IVDKKNRRIGDLLRQVLPQDF----------VKFGLI---------------- 305

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                 PE  GR P+ V L  L + D   ILT+ +++L+ QY+ L   +   L FTE+++
Sbjct: 306 ------PEFIGRVPINVALNQLTEEDMIHILTEPKNSLVKQYEALFAMDDTRLTFTEEAL 359

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
             +A  ++   +     GAR L+++ME V+ D  +    D   K + +  + V  ++
Sbjct: 360 REIAKKSIERKT-----GARGLRSIMENVMMDSMYEIPSDDSVKELTVTDQMVDENM 411


>gi|315657030|ref|ZP_07909915.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492422|gb|EFU82028.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 420

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 172/416 (41%), Gaps = 84/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R  +  
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAERGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 182 ------IDEIDKISRKGENASITRDVSGEGVQQALLKIIE-------------------- 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K       +                  +   SI  +   
Sbjct: 216 ---------GTTASVPPQGGRKHPHQEFIE------------------IDTSSILFIAAG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LDE  K  AR      G   +                    S+     LF      
Sbjct: 249 AFAGLDEIVK--ARLGQRSTGFGSD------------------LKSVKEHGDLFAKVTPD 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+
Sbjct: 289 DLHK-FGLIPEFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            +I A+A++A    +     GAR L T+ME  L  I F      +   V+I+AE V
Sbjct: 348 AAIHAVAELAEKRGT-----GARSLSTLMENTLSQIMFDLPSRDDVAEVIIEAECV 398


>gi|227432008|ref|ZP_03914028.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352293|gb|EEJ42499.1| ATP-dependent protease ATP-binding subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 416

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 174/422 (41%), Gaps = 90/422 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R        L  EL   NI L+GPTG G
Sbjct: 64  TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + R  +   
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVAAAERGII--- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A  S ++S      G 
Sbjct: 181 -----------------------------------YVDEID-KIAKKSENVSITRDVSGE 204

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+                  V+  +I  +    
Sbjct: 205 GVQQALLKMLEGTTASVPSQGGRKHPQQELI---------------QVNTTNILFIVGGA 249

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +D    I  R     IG   +  +                 ++N D+IL       H
Sbjct: 250 FAGIDTI--IKERLGERVIGFGSDANENAE--------------ALNDDNIL-------H 286

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             +P D     L+PE  GR P+   L  L  SD   ILT+ ++ LI QY  L+  + + L
Sbjct: 287 HVQPEDMTKFGLIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVEL 346

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +F  D++DA+A VA+  ++     GAR L++++E V++D+ F      +   V+I    V
Sbjct: 347 EFQPDALDAMASVAIKRHT-----GARGLRSIIENVMKDVMFDIPSRDDVAKVIITKASV 401

Query: 420 RL 421
             
Sbjct: 402 EQ 403


>gi|288941152|ref|YP_003443392.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Allochromatium
           vinosum DSM 180]
 gi|288896524|gb|ADC62360.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Allochromatium vinosum DSM 180]
          Length = 419

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 172/415 (41%), Gaps = 79/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI ++LD ++IGQ+ AK+ +++A+ N ++R ++     D E+   NILL+GPTG GK
Sbjct: 62  KPREINAKLDEFVIGQEKAKKVLSVAVYNHYKRLEVAEAKEDIEIAKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V    
Sbjct: 122 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVY--- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  +A                
Sbjct: 179 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG--------- 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   +I  +     
Sbjct: 224 ---------------------RKHPQQEFL---------------QVDTSNILFIVGGAF 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG S E   +D    +                   +++     
Sbjct: 248 AGLDKV--IQNRSKKTGIGFSAEVQSKDDSRQISE----------------LLSAVEPED 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++   LILT+ +  L+ QY  L + EG+ L+  +D+
Sbjct: 290 LIRYGLIPEFVGRLPVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           +  ++  A+   +     GAR L+T+ME+VL D  +    +     VVIDA  + 
Sbjct: 350 LREISRKAMERKT-----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVIN 399


>gi|46579747|ref|YP_010555.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602777|ref|YP_967177.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|61211537|sp|Q72CE7|CLPX_DESVH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214774|sp|A1VE84|CLPX_DESVV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46449162|gb|AAS95814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563006|gb|ABM28750.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           vulgaris DP4]
 gi|311233537|gb|ADP86391.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           vulgaris RCH1]
          Length = 417

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/424 (24%), Positives = 172/424 (40%), Gaps = 83/424 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLV 59
           ++    +P EI + LD Y+IGQ  AK+ +++A+ N ++R      L    EL   NILL+
Sbjct: 57  EMDRLLTPAEIKARLDEYVIGQHQAKKILSVAVHNHYKRVFYAEALGGEVELEKSNILLI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GP+G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + +
Sbjct: 117 GPSGSGKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAAAK 176

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  +                          
Sbjct: 177 GIIY-------IDEIDKISRKGDGPSITRDVSGE-------------------------- 203

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G    +L + E     +     +K                       + +  D+  
Sbjct: 204 ----GVQQALLKIIEGTEANIPPKGGRKHP-------------------QQEFIRMDTSN 240

Query: 240 MVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           ++   G  F+   DKIV  R  G  +G   +   R   PL E                  
Sbjct: 241 ILFILGGAFIG-LDKIVDQRSGGGSMGFGAKVSNRKDRPLGE-----------------L 282

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           +     +      L+PE  GR PV  H+  L + D   ILT+ ++ L+ QY++L + + +
Sbjct: 283 LDQVHPNDLVKFGLIPEFIGRIPVVTHVDELGEEDLIRILTEPKNALVRQYQKLFELDKV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT +++ ++A  A+   +     GAR L+ VME V+ DI +S   L+  K  +I+  
Sbjct: 343 TLRFTANALKSIASQAIERKT-----GARGLRNVMENVMLDIMYSLPTLEGVKECIINRA 397

Query: 418 YVRL 421
            V  
Sbjct: 398 VVEK 401


>gi|16126204|ref|NP_420768.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus
           CB15]
 gi|221234976|ref|YP_002517412.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter
           crescentus NA1000]
 gi|239977101|sp|B8GX14|CLPX_CAUCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239977102|sp|P0CAU2|CLPX_CAUCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3688207|emb|CAA09092.1| clpX protein [Caulobacter crescentus CB15]
 gi|13423422|gb|AAK23936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter
           crescentus CB15]
 gi|220964148|gb|ACL95504.1| ATP-dependent endopeptidase clp, ATP-binding subunit ClpX
           [Caulobacter crescentus NA1000]
          Length = 420

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/404 (26%), Positives = 160/404 (39%), Gaps = 89/404 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +A+A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR +   IG                       G+  TD            
Sbjct: 251 AGLEKI--ISARGAAKSIGF----------------------GAKVTDPEERRTGEILRN 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+++    ILT+ ++  + QY+ L + E I L 
Sbjct: 287 VEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLT 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           FTED++  +A  A+   +     GAR L+++ME +L +  F   
Sbjct: 347 FTEDALHQVAKKAIARKT-----GARGLRSIMEGILLETMFELP 385


>gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
 gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas
           sp. MED121]
          Length = 425

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 170/421 (40%), Gaps = 79/421 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           P ++   LD Y+IGQ+ AKR +A+A+ N ++R +        EL   NILL+GPTG GKT
Sbjct: 71  PAKLKFALDEYVIGQEKAKRVLAVAVYNHYKRLKHQGKTDGVELGKSNILLIGPTGSGKT 130

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 131 LLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVY---- 186

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +  K I+  VA                 
Sbjct: 187 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG---------- 231

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V   +I  +      
Sbjct: 232 --------------------RKHPQQEFL---------------QVDTSNILFICGGAFA 256

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD    I  R     IG S     ++   +   +  + +     T+ ++          
Sbjct: 257 GLDRV--ISDRTEKGSIGFSAVVKSKEEDKVFSDTVHNVE-----TEDLVKF-------- 301

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L++     IL++ ++ L  QY+ L + EG+ L+FT +S+
Sbjct: 302 ---GLIPEFVGRLPVVATLSELDEEALITILSEPKNALTKQYQHLFELEGVELEFTTESL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDF 426
            A A++A+   +     GAR L++++E  L D  +      +   VV+DA  ++      
Sbjct: 359 QAAAELALERKT-----GARGLRSILESALLDCMYDLPSRTDVVKVVMDANSMKGEAAPL 413

Query: 427 P 427
            
Sbjct: 414 M 414


>gi|186475777|ref|YP_001857247.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
 gi|238691290|sp|B2JGL6|CLPX_BURP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|184192236|gb|ACC70201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phymatum STM815]
          Length = 423

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 177/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDETALMKILVEPKNALVKQYHKLFNMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAIARKAIRRKT-----GARGLRSILEQALLDVMYELPAMKGVSKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|298346556|ref|YP_003719243.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
 gi|298236617|gb|ADI67749.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
          Length = 420

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 173/416 (41%), Gaps = 84/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R  +  
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAERGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 182 ------IDEIDKISRKGENASITRDVSGEGVQQALLKIIE-------------------- 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K       +                  +   SI  +   
Sbjct: 216 ---------GTTASVPPQGGRKHPHQEFIE------------------IDTSSILFIAAG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LDE  K  AR      G   +                    S+     LF      
Sbjct: 249 AFAGLDEIVK--ARLGQRSTGFGSD------------------LKSVKEHGDLFAKVTPD 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FT+
Sbjct: 289 DLHK-FGLIPEFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            +I A+A++A    +     GAR L T+ME  L  I F     ++   V+I+AE V
Sbjct: 348 AAIHAVAELAEKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAEVIIEAECV 398


>gi|315655112|ref|ZP_07908014.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315490593|gb|EFU80216.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
          Length = 420

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 173/416 (41%), Gaps = 84/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R   Q+   D   EL   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R  +  
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAERGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 182 ------IDEIDKISRKGENASITRDVSGEGVQQALLKIIE-------------------- 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K       +                  +   SI  +   
Sbjct: 216 ---------GTTASVPPQGGRKHPHQEFIE------------------IDTSSILFIAAG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LDE  K  AR      G   +                    S+     LF      
Sbjct: 249 AFAGLDEIVK--ARLGQRSTGFGSD------------------LKSVKEHGDLFAKVTPD 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV  ++ +L+  D   +LT+ ++ ++ QY+ L + +G+ L FTE
Sbjct: 289 DLHK-FGLIPEFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTE 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            +I A+A++A    +     GAR L T+ME  L  I F     ++   V+I+AE V
Sbjct: 348 SAIHAVAELAEKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAEVIIEAECV 398


>gi|288929612|ref|ZP_06423456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329117|gb|EFC67704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 410

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 171/419 (40%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P +I + LD+YIIGQ +AKR +++++ N ++R + P  D   E+   NI++VG TG GK
Sbjct: 63  KPMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 123 TLMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVAAAERGIV---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                  +I+     SD  +        
Sbjct: 179 ------------------------------------FVDEIDKIARKSDNPSITRDVSGE 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L      +   K  R                   D D +H D+  ++   G 
Sbjct: 203 GVQQGLLKLLEGTTVNVPPKGGRKHP----------------DQDYIHVDTRNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G                S  + +      D    +       
Sbjct: 247 AFDGIERKIAQRLNTHVVGY--------------NSVQNVR----KIDKGDLMKYILPQD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  +L  L++   R IL + ++++I QY++L K +GI L F  ++
Sbjct: 289 LKSFGLIPEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATET 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  F     + K   +  +Y R  +  
Sbjct: 349 LDYIVDKAVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKQFDVTLQYAREQLDK 402


>gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum
           rubarum]
          Length = 426

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 167/423 (39%), Gaps = 89/423 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD+Y++GQ+ AKR +++A+ N ++R        D EL   NIL++GPTG G
Sbjct: 65  LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDVELQKGNILMIGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++ R  V   
Sbjct: 125 KTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAERGIVY-- 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA+              
Sbjct: 183 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLVEGTVANVPPQGG-------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                              ++          V   +I  +    
Sbjct: 228 ------------------------------RKHPHQEFI-------QVDTSNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            + LD    I  R S   +G   E                     I T            
Sbjct: 251 FIGLDNI--ISQRLSSKNLGFGAE---------------------IRTPEDRKRTGELLA 287

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             RP D     L+PE  GRFPV   L  L+++ F  ILT+ ++ L+ Q+++L   E + L
Sbjct: 288 NVRPDDLLKYGLIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
             TE ++ A+A  A    +     GAR L+ ++E V+ D+ +    +Q    V++  E +
Sbjct: 348 RMTEGALKAIAHKAFIQKT-----GARGLRAILEEVMLDLMYEIPSVQNVLEVLVTEETI 402

Query: 420 RLH 422
             H
Sbjct: 403 NNH 405


>gi|256420339|ref|YP_003120992.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256035247|gb|ACU58791.1| Sigma 54 interacting domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 411

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 175/419 (41%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ DAK+ +A+A+ N ++R      D   E+   NI++VG TG GK
Sbjct: 63  KPVEIKKFLDEYVIGQDDAKKILAVAVYNHYKRLNQQVGDDDVEIEKSNIIMVGETGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +ARL   PF  V+ T FTE GYVG +VE I+  L+ V    V  + R  V    
Sbjct: 123 TLLAKSIARLLNVPFTIVDATVFTEAGYVGEDVESILTRLLQVCNYDVEAAERGIVY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  +                              G  
Sbjct: 180 ----IDEIDKIARKSDNPSITRDVSGE------------------------------GVQ 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G+L L E    ++     +K                  +LI    V+  +I  +     
Sbjct: 206 QGLLKLLEGTEALVPPQGGRKHPE--------------QKLI---KVNTQNILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D  DKI++R                +     G +V+T     N  HIL   +     
Sbjct: 249 ---DGVDKIISRR---------------VQTHSIGFTVNTDREEENKKHILRYINS--QD 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV  +L SL+    + ILT+ ++ L+ QYK+L K EGI L   +D+
Sbjct: 289 LKAFGLIPELLGRLPVVTYLNSLDHEALKAILTEPKNALVKQYKKLFKVEGIELVIEDDA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + + A+        +GAR L+++ E VL D  F+     E T V+   Y    +  
Sbjct: 349 VDYIVEKAMEYK-----LGARGLRSICEVVLSDAMFNLPSSSESTFVLTRAYAEERLDK 402


>gi|148657763|ref|YP_001277968.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus sp.
           RS-1]
 gi|148569873|gb|ABQ92018.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Roseiflexus
           sp. RS-1]
          Length = 436

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/417 (23%), Positives = 170/417 (40%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR +   LD+Y+IGQ  AK  +++A+ N ++R +   +  D E+   NILL+GPTG GK
Sbjct: 77  TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQNADDVEIGKSNILLIGPTGSGK 136

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++   +    
Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAAEGDIERAQTGII---- 192

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 193 ----------------------------------YIDEID-KIARKSDNPSITRDVSGEG 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V         +                     + +  D+  ++   G 
Sbjct: 218 VQQALLKILEGCVAHVPPVPGRKHP-----------------QQEYISFDTTHVLFICGG 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F +  DKI+++  G    +     +    P    S V+        D +L         
Sbjct: 261 AF-EGLDKIISQRIGGKRSIGFHAGESSDAPASLLSQVTP-------DDLL--------- 303

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                 +PE  GR PV   L  L+K     ILT+  + +I QY++++  + + L+ T D+
Sbjct: 304 --RYGFIPEFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++A+A+ A+   +     GAR L+T++E +L D+ +     +     +I+AE V   
Sbjct: 362 LEAIAERALRSKT-----GARALRTIVEEILLDVMYEVPSQEHIGRCIINAEVVEGR 413


>gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacterales bacterium HTCC2083]
 gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 377

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/414 (25%), Positives = 167/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      +   EL   NILL+GPTG GK
Sbjct: 21  TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKNSEIELAKSNILLMGPTGCGK 80

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++R  V    
Sbjct: 81  TLLAQTLARTLDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVEKAQRGIV---- 136

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 137 ----------------------------------YIDEVD-KITRKSENPSITRDVSGEG 161

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 162 VQQALLKLMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 206

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+ +G   +    D   +          G I T+            
Sbjct: 207 AGLDKI--IAARGKGSAMGFGADVRDNDDRGI----------GEIFTEL-------EPED 247

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FTED+
Sbjct: 248 LLRFGLIPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELESTQLTFTEDA 307

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           + A+A  A+   +     GAR L++++E +L D  F    +   T VV++ E V
Sbjct: 308 LSAIAKRAIERKT-----GARGLRSILEEILLDTMFDLPGMDTVTEVVVNDEAV 356


>gi|209525223|ref|ZP_03273766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
 gi|209494408|gb|EDZ94720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira
           maxima CS-328]
          Length = 456

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 180/437 (41%), Gaps = 90/437 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------------QLPADL 47
           LT    P EI   LD+++IGQ + K+ +++A+ N ++R                Q  +D 
Sbjct: 75  LTELPKPVEIKQYLDKHVIGQNNTKKVLSVAVYNHYKRLSVDAGNISNQDFDETQGYSDE 134

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           + EL   NILL+GPTG GKT ++  LA+L   PF   + T  TE GYVG +VE I+  L+
Sbjct: 135 QVELQKSNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLL 194

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            VA   +  +++  +         + I         TS TR+V  + ++   +   E   
Sbjct: 195 QVADFDIEAAQQGIIY-------IDEIDKIARKSENTSITRDVSGEGVQQALLKILE--- 244

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                   + N    GG                        +   Q              
Sbjct: 245 ------GTVVNVPPQGG-----------------------RKHPYQD------------F 263

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           I +DT       ++   G  F+   DK+V  R     +G  + GV+      V+ +SV T
Sbjct: 264 IQIDTSK-----ILFICGGAFVG-LDKLVEQRMGKKSLGFIQPGVKPG--EEVQKTSVDT 315

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +    +  G         L+PE  GR PV   +  L++     ILT+  + L+
Sbjct: 316 TEILQNVEPQDLVKFG---------LIPEFIGRVPVLTVISPLDEEALVKILTEPHNALV 366

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L+K + + L+F  D++ A+A  A    +     GAR L+ ++E ++ ++ +    
Sbjct: 367 KQYKQLLKMDNVSLEFEPDALIAIAKEAYRRKT-----GARALRGILEELMLEVMYELPS 421

Query: 407 LQEK-TVVIDAEYVRLH 422
            ++    VI  E V   
Sbjct: 422 RKDVNRCVITKEMVEKR 438


>gi|206900318|ref|YP_002250811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           thermophilum H-6-12]
 gi|226706584|sp|B5YE53|CLPX_DICT6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206739421|gb|ACI18479.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus
           thermophilum H-6-12]
          Length = 411

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 174/417 (41%), Gaps = 86/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + + +    E+   NILL+GPTGVG
Sbjct: 60  KPHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMKSKITEDVEIQKSNILLIGPTGVG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LA+    PF   + T  TE GYVG +VE I+  L+  A   ++ + +  V   
Sbjct: 120 KTLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNADWDIKRAEKGIVY-- 177

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  + ++  +A+              
Sbjct: 178 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--RIVEGTIANVPPQGG-------- 222

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  ++   I  +    
Sbjct: 223 ----------------------RKHPYQEFI---------------QINTKDILFIAGGS 245

Query: 246 IVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
               +  +KIV +    S  G G   E   R  L  +    +         D I F    
Sbjct: 246 F---EGIEKIVEKRLDVSSIGFGAQIEPKNRKSLTQILNHIIP-------EDLIKF---- 291

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    ++PE  GRFPV   L+ L++     ILT+ ++ L+ QYK L+  EG+ +DF
Sbjct: 292 --------GMIPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSIEGVEIDF 343

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           T++++ ++   A+   +     GAR L+ VME ++ D+ +   +L  K   I  E V
Sbjct: 344 TDEALRSIVKEALEKAT-----GARGLRAVMEELMLDLMYELPNLGIKRFTITPELV 395


>gi|330817270|ref|YP_004360975.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
 gi|327369663|gb|AEA61019.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli
           BSR3]
          Length = 423

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 171/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                    AS
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE-----------------GTMAS 223

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V      +  ++         I       +  L +      +  D   +  I    +   
Sbjct: 224 VPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEK------VITDRTEKTGIGFGAS--- 274

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                   + ++   +   V RE    DL+                              
Sbjct: 275 --------VKSKQERDSGEVLREVEPEDLIKF---------------------------- 298

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D+
Sbjct: 299 ----GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELELRPDA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E+ L D+ +    L+    V+ID   +      
Sbjct: 355 LQAVARKAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIDGDGKP 409

Query: 426 FPSETD 431
                D
Sbjct: 410 LLIYED 415


>gi|284052170|ref|ZP_06382380.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira
           platensis str. Paraca]
 gi|291568934|dbj|BAI91206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira
           platensis NIES-39]
          Length = 456

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 181/439 (41%), Gaps = 94/439 (21%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------------QLPADL 47
           LT    P EI   LD+++IGQ + K+ +++A+ N ++R                Q  +D 
Sbjct: 75  LTELPKPVEIKQYLDQHVIGQNNTKKVLSVAVYNHYKRLSVDAENISNQGFDETQGYSDE 134

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           + EL   NILL+GPTG GKT ++  LA+L   PF   + T  TE GYVG +VE I+  L+
Sbjct: 135 QVELQKSNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLL 194

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            VA   +  +++  V         + I         TS TR+V  + ++   +   E   
Sbjct: 195 QVADFDIEAAQQGIVY-------IDEIDKIARKSENTSITRDVSGEGVQQALLKILE--- 244

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                   + N    GG                        +                  
Sbjct: 245 ------GTVVNVPPQGG-----------------------RKHPY--------------- 260

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEG--SSV 284
              D +  D+ +++   G  F+   DK+V  R     +G     +Q  + P  EG  +SV
Sbjct: 261 --QDFIQIDTSKILFICGGAFVG-LDKVVEQRMGKKSLGF----IQPGVKPEEEGVKTSV 313

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            +     N +    +  G         L+PE  GR PV   +  L++     ILT+  + 
Sbjct: 314 DSTEVLQNVEPQDLVKFG---------LIPEFIGRVPVLTVISPLDEEALVKILTEPHNA 364

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK+L+K + + L+F  D++ A+A  A    +     GAR L+ ++E ++ ++ +  
Sbjct: 365 LVKQYKQLLKMDNVSLEFEPDALIAIAKEAYRRKT-----GARALRGILEELMLEVMYEL 419

Query: 405 SDLQEK-TVVIDAEYVRLH 422
              ++  + VI  E V   
Sbjct: 420 PSRKDVNSCVITKEMVEKR 438


>gi|23099532|ref|NP_692998.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus
           iheyensis HTE831]
 gi|46576554|sp|Q8CXB8|CLPX_OCEIH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22777762|dbj|BAC14033.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Oceanobacillus iheyensis HTE831]
          Length = 425

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 169/424 (39%), Gaps = 83/424 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M++     P+EI   LD Y+IGQ  AK+ +++A+ N ++R        + E+   NI ++
Sbjct: 56  MEMNEIPKPKEICDILDDYVIGQDKAKKNLSVAVYNHYKRVNSGKGNDEVEIAKSNIAMI 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V     
Sbjct: 116 GPTGSGKTLLAQTLARIINVPFAMADATSLTEAGYVGEDVENILLKLIQAADYDV----- 170

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE+ I+                            EID +VA  S + S  
Sbjct: 171 --------EKAEKGII-------------------------YIDEID-KVARKSENPSIT 196

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     + +  D+  
Sbjct: 197 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTN 239

Query: 240 MVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           ++   G  F D  D+++ R  G   IG      Q DL                  D    
Sbjct: 240 ILFIVGGAF-DGIDQVIKRRLGKKVIGFGSHEKQEDL------------------DTGQL 280

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           ++           L+PE  GR PV   L  L++     ILT  ++ L+ QY++L + + +
Sbjct: 281 LSKVLPEDLLRYGLIPEFIGRIPVIGSLTPLDEEALIEILTKPKNALVKQYQKLFEIDHV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F E+++  +A  A+   +     GAR L++++E ++ D+ F     ++    +I  E
Sbjct: 341 ELEFEEEALQEIAKKAIERKT-----GARGLRSIIEGIIVDVMFDIPSREDVDRCIITKE 395

Query: 418 YVRL 421
            V  
Sbjct: 396 TVSD 399


>gi|254415617|ref|ZP_05029376.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177567|gb|EDX72572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
          Length = 468

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 163/425 (38%), Gaps = 86/425 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILL 58
             P EI   LD+Y+IGQ  AK+ +++A+ N ++R  L  +  D         L   NILL
Sbjct: 103 LKPVEIKQVLDKYVIGQDQAKKVLSVAVYNHYKRLNLAQEDYDASGLDDSITLQKSNILL 162

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ +A   +  + 
Sbjct: 163 IGPTGCGKTLLAQTLANLLQVPFAIADATTLTEAGYVGDDVENILLRLLQMADFDIEAAE 222

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           +  V         + I         +S TR+V  + ++   +   E           + N
Sbjct: 223 QGIVY-------IDEIDKITRKSEKSSMTRDVSGEGVQQALLKILE---------GTVVN 266

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG         +L            I       +  L +      I    + + SI
Sbjct: 267 VPPQGGRKHPYQEFIQL--------DTSNILFICGGAFVGLEQ------IIEQRLGKRSI 312

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             ++                   +   +S+     DL+                      
Sbjct: 313 GFIQPSE----------TRSPQLSSAELSKHLEPDDLIKF-------------------- 342

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PEI GR PV   ++ L++     ILT   + L+ QY++L+  + +
Sbjct: 343 ------------GVIPEIIGRLPVITAVEPLDEDSLVAILTKPRNALVKQYQKLLNMDNV 390

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F  +++ A+A  A    +     GAR L+ ++E V+ ++ +     Q+ T   I  E
Sbjct: 391 RLEFHPEALRAIAQEAFRRKT-----GARALRGILEEVMLEVMYEIPSRQDITRCAITRE 445

Query: 418 YVRLH 422
            V   
Sbjct: 446 MVEKR 450


>gi|330994050|ref|ZP_08317980.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Gluconacetobacter sp. SXCC-1]
 gi|329758996|gb|EGG75510.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Gluconacetobacter sp. SXCC-1]
          Length = 419

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/406 (25%), Positives = 159/406 (39%), Gaps = 89/406 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 64  TPREICKILDDYVIGQAHAKKVLSVAVHNHYKRLAHAQKNNDVEIAKSNIMLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIV---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   ++  +     
Sbjct: 205 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNMLFICGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I AR  G+GIG   +    +   +                            
Sbjct: 250 AGLDKI--ISARGKGSGIGFGADVQSPEERRM----------------------GAVLRD 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L+++    ILT  ++ L+ QY  L + E + L 
Sbjct: 286 VEPEDLLKFGLIPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEEVQLT 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           FTED++  +A  A+   +     GAR L+ ++E +L    F    L
Sbjct: 346 FTEDALRQIAQRAIARRT-----GARGLRAILESILLSTMFDLPGL 386


>gi|307250530|ref|ZP_07532474.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857423|gb|EFM89535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 419

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 168/424 (39%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 186 --------------------------------------FIDEID-KITRKSESPSITRDV 206

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +  P               V+   I  + 
Sbjct: 207 SGEGVQQALLKLIEGTVANINPQGSRKHPKGETIP---------------VYTSKILFIC 251

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                 L   DKI     +   GIG   E     L    E   ++  +  +  + ++   
Sbjct: 252 GGAFAGL---DKIVEARSNKQGGIGFGAE-----LKKDKEREDLTELFKQVEPEDLVKF- 302

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L
Sbjct: 303 ----------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVEL 352

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS----DLQEKTVVIDA 416
            FT+D++ A+A  +++  +     GAR L++++E +L D  ++      +   + V I  
Sbjct: 353 KFTKDALIAIAQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNVQKVTIGK 407

Query: 417 EYVR 420
             V 
Sbjct: 408 GCVE 411


>gi|42527180|ref|NP_972278.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema
           denticola ATCC 35405]
 gi|61211559|sp|Q73M37|CLPX_TREDE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41817604|gb|AAS12189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           denticola ATCC 35405]
          Length = 415

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 180/414 (43%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P+E+   LD Y+IGQ+ AKR +++A+ N ++R   P  +    +   N+LL+GPTG GK
Sbjct: 63  TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++E+    +    
Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEAEMGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------FIDEID-KISRKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +         +   +   Q               DM  +   +I  +     
Sbjct: 204 VQQALLKIIEGTSASVPPQGGRKHPNQ---------------DMLKIDTTNILFICGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           V LD+   + AR S   IG   E      +  +   +++  Y  ++ D ++         
Sbjct: 249 VGLDKI--VEARISTKPIGFGAE------VKKLSEKNLTELYDQVSPDDLVKF------- 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR P++V L  L K D   IL + ++ +I Q++   K + + L F +D+
Sbjct: 294 ----GLIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           I A+A  A++ N+     GAR L++++E+++ D  F A  ++  K ++I+ + +
Sbjct: 350 ITAIAQQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398


>gi|254418572|ref|ZP_05032296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           sp. BAL3]
 gi|196184749|gb|EDX79725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           sp. BAL3]
          Length = 422

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/399 (25%), Positives = 164/399 (41%), Gaps = 79/399 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFIVGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR +G  IG         +  + E  +     G    D + F        
Sbjct: 251 AGLEKV--ISARGAGASIGFGA-----QVKEIDERRTGDILKGVEPDDLMRF-------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK L + E + L FT+D+
Sbjct: 296 ----GLIPEFIGRLPVLATLEDLDETALVTILTEPKNALVKQYKRLFEMENVELTFTDDA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + A+A  A+   +     GAR L++++E +L +  F   
Sbjct: 352 LIAVAKKAITRKT-----GARGLRSILEGILLETMFELP 385


>gi|163841991|ref|YP_001626396.1| ATP-dependent protease ATP-binding subunit ClpX [Renibacterium
           salmoninarum ATCC 33209]
 gi|189044144|sp|A9WUW1|CLPX_RENSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|162955467|gb|ABY24982.1| ATP-dependent endopeptidase clp ATP-binding subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 427

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 170/425 (40%), Gaps = 91/425 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----------LRDELMPKNIL 57
            P+EI + L  Y+IGQ+ AKR++++A+ N ++R Q  +              E+   NIL
Sbjct: 63  KPKEIFNFLQEYVIGQEPAKRSLSVAVYNHYKRIQAGSKGSALADGNHHDDVEIAKSNIL 122

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+++
Sbjct: 123 LIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKKA 182

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
            +  +         + I          S TR+V  + ++   +   E  +    +     
Sbjct: 183 EQGIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTV---ASVPPQG 232

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               P    + I   + LF               V   +  L        I      +  
Sbjct: 233 GRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEE------IIGARAGKKG 272

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I      G +  DE                                    YG +  + +L
Sbjct: 273 IGFGAPLGALSGDEL----------------------------------GYGDVMPEDLL 298

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         L+PE  GR PV   +  L++     IL++ ++ LI QY+++   +G
Sbjct: 299 KF-----------GLIPEFIGRLPVITTVSHLDRPALMQILSEPKNALIKQYQKMFHLDG 347

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L F +D+++A+AD A+   +     GAR L+ +ME VL  + F     ++  + V+ A
Sbjct: 348 VDLVFEDDALEAIADQALERGT-----GARGLRAIMEEVLLPVMFELPSREDIASAVVTA 402

Query: 417 EYVRL 421
           E VR 
Sbjct: 403 EVVRE 407


>gi|282900540|ref|ZP_06308484.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194593|gb|EFA69546.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 427

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 97/437 (22%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------QLPADLRDEL 51
           + L     PREI + LD ++IGQ +AK+ +++A+ N ++R          + P +   EL
Sbjct: 55  ISLNQIPKPREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVAQGKANDKSPGEDSVEL 114

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 115 QKSNILLIGPTGCGKTLLAQSLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAN 174

Query: 112 NIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             V E++R     DE+ + A  +    I   + G+       ++    + +         
Sbjct: 175 LDVEEAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKH 234

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                   D SN     G +   L                                  ++
Sbjct: 235 PYQDCIQIDTSNILFICGGAFVGL----------------------------------EK 260

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
           ++D   V + S+  V+                   +G G SRE      L  +E   +  
Sbjct: 261 VVDH-RVGKKSMGFVQ-------------------SGEGQSREKRVATTLKQLEPDDL-V 299

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           K+G I                      PE  GR P+   ++ L++     ILT   S L+
Sbjct: 300 KFGMI----------------------PEFIGRMPMVAVVEPLDEDALMAILTQPRSALV 337

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY++L+K + + L+F E+++ A+A  A    +     GAR L+ ++E ++ D+ +    
Sbjct: 338 KQYQKLLKMDNVNLEFKEEALSAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPS 392

Query: 407 LQEK-TVVIDAEYVRLH 422
            ++  T  +  E V   
Sbjct: 393 RKDVTTCTVTREMVEKR 409


>gi|332708808|ref|ZP_08428779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya
           majuscula 3L]
 gi|332352350|gb|EGJ31919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya
           majuscula 3L]
          Length = 448

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/434 (23%), Positives = 176/434 (40%), Gaps = 89/434 (20%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---------QLPADLRD-- 49
           + +     PREI   LD ++IGQ++AK+ +++A+ N ++R          Q    + D  
Sbjct: 74  ISMNQIPKPREIKRYLDDHVIGQEEAKKVLSVAVYNHYKRLSLLQSKAQGQGQGIIDDGI 133

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ V
Sbjct: 134 ELQKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQV 193

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V E++R  +                                         EID +V
Sbjct: 194 ADLDVEEAQRGII--------------------------------------YIDEID-KV 214

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + S      G  V    L  L   +     +   +   Q C              
Sbjct: 215 ARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCI------------- 261

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              +   +I  +     V LD+   +  R     +G  + G  +        ++   ++ 
Sbjct: 262 --QIDTSNILFICGGAFVGLDKV--VEQRLGKRSMGFIQPGENQSKEK---RTADILRHL 314

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + D + F             ++PE  GR P+   ++ L++     ILT+ ++ L+ QY
Sbjct: 315 QPD-DLVKF------------GMIPEFIGRIPMVAVIEPLDEEALMAILTEPKNALVKQY 361

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +L+K + + L+F  D+I ALA  A    +     GAR L+ ++E ++ ++ +     ++
Sbjct: 362 MKLLKMDNVNLEFMPDAIRALAQEAYRRKT-----GARALRGIVEELMLEVMYELPSRKD 416

Query: 410 KT-VVIDAEYVRLH 422
            T   I  E V   
Sbjct: 417 VTRCTITREMVEKR 430


>gi|291298894|ref|YP_003510172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568114|gb|ADD41079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stackebrandtia nassauensis DSM 44728]
          Length = 567

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 175/426 (41%), Gaps = 88/426 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--------LPADLRDELMPKNILLVG 60
           P+EI   LD Y++GQ+DAKRA+A+A+ N ++R Q         PA    EL   NIL++G
Sbjct: 64  PKEICEFLDEYVVGQEDAKRALAVAVYNHYKRVQVEAVAGKPRPASEPVELSKSNILMIG 123

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +   
Sbjct: 124 PTGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIVAADYDIKRAETG 183

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +            +D +      S +R + R                         +  
Sbjct: 184 IIY-----------IDEIDKAGRKSESRSITR-------------------------DVS 207

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G     +  L    + V   G +K                      D   +   +I  
Sbjct: 208 GEGVQQALLKILEGTVASVPPQGGRKHPHQ------------------DFLQIDTTNILF 249

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +       L+E   +  R   NG+G +          L      + +    +      + 
Sbjct: 250 ICGGSFSGLEEI--VERRKGANGVGFTA--------KLRIRGEENPEDNLADAMPEDLLE 299

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
            G         L+PE  GR P+   ++ L++     ILT+  + LI QY+ L++ +G+ L
Sbjct: 300 FG---------LIPEFIGRVPIMTAVRQLDREALIKILTEPRNALIKQYQRLLELDGVEL 350

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVIDAEY 418
            F +D+++ + D+A+   +     GAR L+ +ME VL+ + +      +K   VVI  + 
Sbjct: 351 VFEDDALEPIVDLALLRGT-----GARGLRAIMEEVLQPVMYEIPSHADKVARVVITGDV 405

Query: 419 VRLHIG 424
           VR ++ 
Sbjct: 406 VRKNVN 411


>gi|161524523|ref|YP_001579535.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189350721|ref|YP_001946349.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|221198215|ref|ZP_03571261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
 gi|221209203|ref|ZP_03582195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221215058|ref|ZP_03588025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|238687053|sp|A9AJR1|CLPX_BURM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160341952|gb|ABX15038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans ATCC 17616]
 gi|189334743|dbj|BAG43813.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221164994|gb|EED97473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD1]
 gi|221170941|gb|EEE03396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2]
 gi|221182147|gb|EEE14548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           multivorans CGD2M]
          Length = 423

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 176/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I  R    GIG               G++V +K    + D    +      
Sbjct: 252 AF-DGLEKVITDRTEKTGIGF--------------GATVKSKQ---DRDAGEVLRDVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|291288694|ref|YP_003505510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885854|gb|ADD69554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 415

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 167/416 (40%), Gaps = 77/416 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI ++LD Y+IGQQ AK+ +++A+ N ++R         EL   NILL+GPTG GK
Sbjct: 61  LTPAEIKAKLDEYVIGQQAAKKILSVAVHNHYKRVLHGKKSEVELEKSNILLLGPTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V        R Q 
Sbjct: 121 TLLARTLARILNVPFAIADATTLTEAGYVGEDVENVVLKLLQNADYDVE-------RTQK 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I   + I        + S TR+V  + ++   +   E                      
Sbjct: 174 GIIFIDEIDKISKRGDSPSITRDVSGEGVQQALLKIIE---------------------- 211

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K  +                   D   V   +I  +     
Sbjct: 212 -------GTIANVPPQGGRKHPQQ------------------DYIQVDTSNILFIVGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            +LDE  K        G   + E   +  L   E                  +       
Sbjct: 247 DYLDEVIKKRVGKKSLGFSSATEEETKSELNRFE-----------------LLCELQPTD 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L+ L++     IL + +++L+ QY+++ K + + L FT  +
Sbjct: 290 LVKYGLIPEFVGRLPVAAALEDLDEEALVRILQEPKNSLLRQYEQMFKFDDVKLTFTNSA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + ++A  A+N  +     GAR L++++E  + D+ +S    +  K  +I+ + V  
Sbjct: 350 LKSVAKKALNRKT-----GARGLRSILEESMMDVMYSIPSEEGIKECIINEDVVNE 400


>gi|89098928|ref|ZP_01171808.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086332|gb|EAR65453.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL
           B-14911]
          Length = 376

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 174/418 (41%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 18  KPAEIRDILDEYVIGQEQAKKSLSVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGK 77

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 78  TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 125

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 126 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 158

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 159 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 201

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  ++I+ R  G   IG   E  Q++L      S V  +      D + F       
Sbjct: 202 AF-DGIEQIIKRRLGQKVIGFGSEQKQQELDQKELLSKVLPE------DLLKF------- 247

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     ILT  ++ L+ QY+++++ + + L+F E 
Sbjct: 248 -----GLIPEFIGRLPVIASLTQLDEEALIEILTKPKNALVKQYQKMLELDDVELEFEEG 302

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++  +A  A+   +     GAR L++++E ++ D+ F      +    +I  E V  +
Sbjct: 303 ALHEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDISKCIITKETVTDN 355


>gi|240950345|ref|ZP_04754615.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
 gi|240295156|gb|EER45975.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           minor NM305]
          Length = 414

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 169/420 (40%), Gaps = 85/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
           +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R +      +     EL   NILL+GPT
Sbjct: 65  TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKRLKSALSNHEVTNGVELGKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 125 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 185 --------------------------------------FIDEID-KITRKSESASITRDV 205

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  L   V     +   +    +  P          +D   +       + 
Sbjct: 206 SGEGVQQALLKLLEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 248

Query: 243 NYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DKIV    +   GIG + E         +                 LF  
Sbjct: 249 ICGGAFAG-LDKIVESRTNKQGGIGFAAELKNDKERQDLTE---------------LFKQ 292

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                + R   L+PE+ GR PV   L+ L+++    ILT+ ++ +I QY+ L + EG+ L
Sbjct: 293 VEPEDLVR-FGLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVEL 351

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +FT+D++ A+A  A+   +     GAR L++++E +L D  +    L  K V ++   V 
Sbjct: 352 EFTQDALVAIAKKAIVRKT-----GARGLRSIVEGLLLDTMYDLPTLNAKKVTVEKACVE 406


>gi|257055264|ref|YP_003133096.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Saccharomonospora viridis DSM 43017]
 gi|256585136|gb|ACU96269.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Saccharomonospora viridis DSM 43017]
          Length = 429

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 177/437 (40%), Gaps = 96/437 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMP 53
           +KL     P +I   L++YIIGQ DAKR +A+A+ N ++R +  A       D   EL  
Sbjct: 56  VKLDELPKPADIHEFLEQYIIGQDDAKRTLAVAVYNHYKRIKSDASGTKDSKDEPVELAK 115

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NIL++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   
Sbjct: 116 SNILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYD 175

Query: 114 VRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           V+ +       DEV + A                  S TR+V  + ++   +   E    
Sbjct: 176 VKRAETGIIYIDEVDKIARK------------SENPSITRDVSGEGVQQALLKILEGT-- 221

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              +         P    + I   + LF               V   +  L +      I
Sbjct: 222 -TASVPPQGGRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEK------I 260

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             D + +  I                I  +   +   + +E +  DL+            
Sbjct: 261 INDRIGKRGIGFGAE-----------IRTKQELDESDIFKEAMPEDLIKF---------- 299

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                                  L+PE  GR PV   + +L+K     ILT+  + L  Q
Sbjct: 300 ----------------------GLIPEFIGRLPVVASVSNLDKQSLVRILTEPRNALTKQ 337

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK+L + + + L+FT+ +++A+AD A+   +     GAR L+ +ME VL+ + +      
Sbjct: 338 YKKLFEMDNVELEFTKTALEAIADQALLRGT-----GARGLRAIMEEVLQPVMYEIPSRD 392

Query: 409 EK-TVVIDAEYVRLHIG 424
           +   VVI  + VR ++ 
Sbjct: 393 DVAKVVITEQTVRENVN 409


>gi|325266076|ref|ZP_08132762.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982714|gb|EGC18340.1| ATP-dependent Clp protease ATP-binding subunit [Kingella
           denitrificans ATCC 33394]
          Length = 427

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 180/416 (43%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P ++V++L+ ++IGQ++AK+A+A+A+ N ++R + P AD R EL   N+L++GPTG GK
Sbjct: 72  TPAQLVAQLNEHVIGQENAKKALAVAVYNHYKRLRQPEADSRVELNKSNVLMIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LAR    PF   + T  TE GYVG +VE II  L+      V +++   +    
Sbjct: 132 TYMVQSLARQLNVPFAMADATTLTEAGYVGEDVETIITKLLGNCDFNVEKAQHGIIY--- 188

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        + S TR+V  + ++   +   E  +          N +      
Sbjct: 189 ----IDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTMASVPQQGGRRNPN------ 238

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  + I++DT    +I  +     
Sbjct: 239 --------------------------------------QQFINVDT---SNILFICGGAF 257

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG   +   +D     E S +   +  +  + ++         
Sbjct: 258 AGLDKV--IRQRTEKGGIGFGADVHSKD-----EDSKIGELFAQVEPEDLIKF------- 303

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E   L+  E +
Sbjct: 304 ----GLIPELIGRLPVLTSLNELDEDALVRILTEPKNALVKQYQALFAMENKTLEMDESA 359

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
           + A+A +A+   +     GAR L+++MERVL D  +   DL E   VV+  E+V  
Sbjct: 360 LRAVAQLAMKRKT-----GARGLRSIMERVLLDTMYLLPDLPEVAKVVVRREHVEQ 410


>gi|71083580|ref|YP_266299.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062693|gb|AAZ21696.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 422

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 166/415 (40%), Gaps = 81/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG GK
Sbjct: 62  PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R  V    
Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIV---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 178 ----------------------------------YIDEVD-KISRKSENPSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 203 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  RD G  IG      + D                 +     ++ +     
Sbjct: 248 AGLDKI--ISQRDKGTSIGFGANVKKTD-----------------DKKTGEWMKTLEPED 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L+ L++     IL + +++LI QY+EL K +G  L F E++
Sbjct: 289 LLKYGLIPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           I  +A  A+N  +     GAR L++++E +L    +        + V++DA   +
Sbjct: 349 IKEIAQKAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEEVIVDASAAK 398


>gi|332664755|ref|YP_004447543.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333569|gb|AEE50670.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 424

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 101/418 (24%), Positives = 176/418 (42%), Gaps = 81/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++I   LD+Y+IGQ DAK+ +++A+ N ++R         E+   NI+LVG TG GKT
Sbjct: 77  TPKDIKVHLDQYVIGQDDAKKFLSVAVYNHYKRLGQHISDDVEIEKSNIVLVGRTGTGKT 136

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ +A+    PF  V+ T FTE GYVG +VE I+  L+ V    V  + R  V     
Sbjct: 137 LLAKTIAKYLNVPFAIVDATVFTEAGYVGEDVESILSRLLQVCDYDVASAERGIV----- 191

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               EID ++A    + S      G  V
Sbjct: 192 ---------------------------------YIDEID-KIARKGDNPSITRDVSGEGV 217

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  L    +    +   +                +L+    V+ ++I  +      
Sbjct: 218 QQALLKMLEGTDVNVPPQGGRKHP------------EQKLV---KVNTENILFICGGAFD 262

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            +++   I  R +   IG      +R                 I+ D++L          
Sbjct: 263 GIEKI--IARRVNTQVIGFKASEKER-----------------IDRDNLL--QYITHQDL 301

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE+ GR PV  +L  L+    + IL++  ++L+ QY++L + EGI L F +D+I
Sbjct: 302 KGFGLIPELIGRLPVLTYLDPLDLPTLKRILSEPRNSLLRQYQKLFELEGIELSFADDAI 361

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           + +A  A+  N     +GAR L+++ E ++ D  F      + + ++IDA+Y    + 
Sbjct: 362 EFIATKALEFN-----LGARGLRSICEAIMTDAMFELPSTPDVRKLMIDADYALEKLS 414


>gi|152976887|ref|YP_001376404.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189082483|sp|A7GTF1|CLPX_BACCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|152025639|gb|ABS23409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cytotoxicus NVH 391-98]
          Length = 419

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPIEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E          + + V+ K+   +      +  G   
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEK---------KNAEVNEKHVLSHVLPEDLLRFG--- 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 294 ------LIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTRETV 397


>gi|228993213|ref|ZP_04153134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           pseudomycoides DSM 12442]
 gi|228999262|ref|ZP_04158842.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock3-17]
 gi|229006809|ref|ZP_04164442.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock1-4]
 gi|228754431|gb|EEM03843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock1-4]
 gi|228760459|gb|EEM09425.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           mycoides Rock3-17]
 gi|228766539|gb|EEM15181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           pseudomycoides DSM 12442]
          Length = 444

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 88  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 147

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 148 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 195

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 196 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 229 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 271

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 272 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 318 -----GLIPEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEG 372

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 373 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILSKETV 422


>gi|156741458|ref|YP_001431587.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus
           castenholzii DSM 13941]
 gi|156232786|gb|ABU57569.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseiflexus
           castenholzii DSM 13941]
          Length = 436

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 168/417 (40%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR +   LD+Y+IGQ  AK  +++A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 77  TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQSADDIEIGKSNILLIGPTGSGK 136

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++   +    
Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAADGDIERAQTGII---- 192

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 193 ----------------------------------YIDEID-KIARKSDNPSITRDVSGEG 217

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V         +                     + +  D+  ++   G 
Sbjct: 218 VQQALLKILEGCVAHVPPVPGRKHP-----------------QQEYISFDTTHVLFICGG 260

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F +  DKI+ +  G    +     +    P    S V+        D +L         
Sbjct: 261 AF-EGLDKIIDQRIGGKRSIGFHAGEPSDAPTSLLSQVTP-------DDLL--------- 303

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                 +PE  GR PV   L  L+K     ILT+  + +I QY++++  + + L+ T D+
Sbjct: 304 --RYGFIPEFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDA 361

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++A+AD A+   +     GAR L+T++E +L D+ +     +     +I+AE V   
Sbjct: 362 LEAIADRALRSKT-----GARALRTIVEDILLDVMYEVPSQEHIGRCIINAEVVEGR 413


>gi|220912905|ref|YP_002488214.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
 gi|254763831|sp|B8HA33|CLPX_ARTCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219859783|gb|ACL40125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           chlorophenolicus A6]
          Length = 426

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 170/425 (40%), Gaps = 93/425 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKN 55
            PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q                   E+   N
Sbjct: 63  KPREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGNLGDGGHHDDVEIAKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 123 ILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 182

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           ++ +  +         + I          S TR+V  + ++   +   E  +        
Sbjct: 183 KAEQGIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 235

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                                                        ++          +  
Sbjct: 236 ----------------------------------------RKHPHQEFI-------QIDT 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  +       L+E   I +R    GIG           PL E S  +  YG +  + 
Sbjct: 249 TNVLFIVAGAFAGLEEI--IGSRSGRKGIGFGA--------PLNEASKKADSYGEVMPED 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L              L+PE  GR PV   + +L++     IL+  ++ L+ QY+++ + 
Sbjct: 299 LLKF-----------GLIPEFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQI 347

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVI 414
           +G+ L F + ++DA+AD A+   +     GAR L+ ++E VL  + F     ++  +VVI
Sbjct: 348 DGVELVFDDGALDAIADQALERGT-----GARGLRAILEEVLLPVMFDLPSREDVASVVI 402

Query: 415 DAEYV 419
             + V
Sbjct: 403 TEDVV 407


>gi|163785493|ref|ZP_02180085.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879239|gb|EDP73151.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 283

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 144/283 (50%), Positives = 199/283 (70%), Gaps = 14/283 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F+P++IV EL++Y+IGQ +AK++VAIALRNRWRRQQLP DLRDE++PKNIL++GPTGVG
Sbjct: 3   EFTPKQIVEELNKYVIGQYEAKKSVAIALRNRWRRQQLPEDLRDEVVPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA L  APFIKVE TKFTE+GYVGR+VE IIR+L + +  +V+E +  EV E+
Sbjct: 63  KTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVEAIIRELAESSFKMVKEEKMAEVEEK 122

Query: 126 ASINAEERILDALVGK------------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           A   AEE+ILD LV +            T  S  RE FR+ LR+G++ D+ ++IEV +  
Sbjct: 123 AKKLAEEKILDYLVPRKIRRFSNIEENETEESPAREKFREMLREGKLDDRIVEIEVEEKP 182

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +     PG   +    L +LFS  +   +KK+ +M+V+  +  L + E+++LIDMD V
Sbjct: 183 TVVGGVIAPGMEDIE-NQLKDLFSS-LAPSKKKRRKMTVKDAFKYLKQQEAEKLIDMDEV 240

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             ++I+  EN GIVF+DE DK+  + SG+G  VSREGVQRDLL
Sbjct: 241 ASEAIRRAENLGIVFIDEIDKVAGKSSGSGPDVSREGVQRDLL 283


>gi|254455799|ref|ZP_05069228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082801|gb|EDZ60227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 422

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 165/423 (39%), Gaps = 81/423 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVG 65
           SP+EI S LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG G
Sbjct: 61  SPKEICSVLDDYVIGQPHAKKVLSVAVHNHYKRLNYENKTSKNVELAKSNILLVGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V +++R  V   
Sbjct: 121 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQRGIV--- 177

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 E+D +++  S + S      G 
Sbjct: 178 -----------------------------------YIDEVD-KISRKSENPSITRDVSGE 201

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q+                  V   +I  +    
Sbjct: 202 GVQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGA 246

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LD+   I  RD G  IG   +                      +     ++ +    
Sbjct: 247 FAGLDKI--ISQRDKGTSIGFGADVKNTQ-----------------DKKTGEWMKTLEPE 287

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L+ L++     IL + +++L  QY+EL K +G  L F E+
Sbjct: 288 DLLKFGLIPEFIGRLPMIATLEDLDEKSLIKILQEPKNSLTKQYQELFKLDGAKLTFKEN 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A++  +     GAR L++++E +L    +        + V++DA   R    
Sbjct: 348 ALKEIAQKAISKKT-----GARGLRSILENILLKTMYDLPSQDNVEEVIVDAGAARGQSQ 402

Query: 425 DFP 427
              
Sbjct: 403 PIL 405


>gi|91761999|ref|ZP_01263964.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717801|gb|EAS84451.1| ATP-dependent clp proteinase regulatory chain X [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 422

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 166/415 (40%), Gaps = 81/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQ  AK+ +++A+ N ++R           EL   NILLVGPTG GK
Sbjct: 62  PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R  V    
Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIV---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 178 ----------------------------------YIDEVD-KISRKSENPSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 203 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  RD G  IG      + D                 +     ++ +     
Sbjct: 248 AGLDKI--ISQRDKGTSIGFGANVKKTD-----------------DKKTGEWMKTLEPED 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR P+   L+ L++     IL + +++LI QY+EL K +G  L F E++
Sbjct: 289 LLKYGLIPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           I  +A  A+N  +     GAR L++++E +L    +        + V++DA   +
Sbjct: 349 IKEIAQKAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEEVIVDASAAK 398


>gi|229098946|ref|ZP_04229881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-29]
 gi|229117975|ref|ZP_04247335.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-3]
 gi|228665424|gb|EEL20906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock1-3]
 gi|228684444|gb|EEL38387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-29]
          Length = 419

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|315108936|gb|EFT80912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA2]
          Length = 429

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 168/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAGNPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPEA--------------- 290

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                 + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 291 ----LSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|229019697|ref|ZP_04176504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1273]
 gi|228741604|gb|EEL91797.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1273]
          Length = 419

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALVEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|222623077|gb|EEE57209.1| hypothetical protein OsJ_07170 [Oryza sativa Japonica Group]
          Length = 583

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/446 (22%), Positives = 173/446 (38%), Gaps = 103/446 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +P+EI   LD+Y+IGQ  AK+ +++A+ N ++R                       D   
Sbjct: 155 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 214

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--------------EIGYV 95
           EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T              + GYV
Sbjct: 215 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 274

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE I+  L+ VA   V+ +++  V            +D                   
Sbjct: 275 GEDVESILYKLLAVADFNVQAAQQGMVY-----------ID------------------- 304

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
                     +++     ++  N             L ++    + +  +K  R   +  
Sbjct: 305 ----------EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG- 353

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                          D +  D+  ++   G  F+D    I  R   + IG          
Sbjct: 354 ---------------DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMR 398

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
              +  + V++     + +    IA G         L+PE  GRFP+ V L +LN+    
Sbjct: 399 AGGISSAQVTSSLLE-SVESGDLIAYG---------LIPEFIGRFPILVSLAALNEDQLV 448

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            +L + ++ L  Q+K+L     + L FT+ ++  +A  A++ N+     GAR L+T++E 
Sbjct: 449 QVLMEPKNALGKQFKKLFSMNNVKLHFTDAALRIIAKKAMSKNT-----GARGLRTILEN 503

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRL 421
           +L D  +   D +     IDA  V  
Sbjct: 504 ILMDAMYEIPDAKSGEKRIDAVVVDE 529


>gi|83644979|ref|YP_433414.1| ATP-dependent protease ATP-binding subunit ClpX [Hahella chejuensis
           KCTC 2396]
 gi|123533762|sp|Q2SK35|CLPX_HAHCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83633022|gb|ABC28989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hahella
           chejuensis KCTC 2396]
          Length = 427

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 105/414 (25%), Positives = 167/414 (40%), Gaps = 79/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AK A+A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 69  TPHEIKETLDDYVIGQTRAKLALAVAVYNHYKRLRYEDKKGEVELGKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V    
Sbjct: 129 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQKGIVY--- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 186 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 230

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V   +I  +     
Sbjct: 231 ---------------------RKHPQQEFL---------------QVDTSNILFICGGAF 254

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R     IG S       +   +   SV      + T+ ++         
Sbjct: 255 AGLEKI--IRDRAEKGSIGFSA-----VVKSQLSSKSVGETLKDVETEDLIKF------- 300

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+++    ILT   + L  QY +L + E + +DF ED+
Sbjct: 301 ----GLIPEFVGRLPVIATLDELDEAALIQILTQPRNALTKQYSKLFEMESVEVDFREDA 356

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           + ++A  A+   +     GAR L++++E+VL    +     Q+   VVID   +
Sbjct: 357 LRSIAKKAMERKT-----GARGLRSILEQVLLKTMYDIPSEQDVCKVVIDEGVI 405


>gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. SR1/5]
          Length = 437

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 169/416 (40%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI S LD Y+IGQ DAK+A+++A+ N ++R     +L  EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHSILDEYVIGQDDAKKALSVAVYNHYKRILASRNLDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +        R Q 
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIE-------RAQY 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I   + I         TS TR+V  + ++   +   E  +                   
Sbjct: 179 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGG----------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                  +    + +  D+  ++   G 
Sbjct: 228 --------------------------------------RKHPHQEFIQIDTTNILFICGG 249

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+ AR     IG   E        + E    +            FI  G   
Sbjct: 250 AF-DGLEKIIEARQDTKSIGFGAE--------VSEKEDRNVGEVLKEVMPEDFIKFG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V L SL++     IL + +++L  QY +L + +G+ L+F ++
Sbjct: 298 ------LIPEFIGRVPVVVTLDSLDEEALIRILKEPKNSLTKQYDKLFELDGVQLEFQDE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ +A  ++   +     GAR L+ +ME  L D+ +    D   +  ++  E V 
Sbjct: 352 ALETVARKSLERKT-----GARGLRAIMEHTLMDLMYKTPSDDTIRKCIVTKEAVE 402


>gi|227824396|ref|ZP_03989228.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
 gi|226904895|gb|EEH90813.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
          Length = 425

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 173/424 (40%), Gaps = 81/424 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLV 59
           K+T    P+EI   LD Y+IGQ DAK A+++A+ N ++R     D     EL   NIL++
Sbjct: 60  KITDLPKPKEIKKILDEYVIGQDDAKVALSVAVYNHYKRINYEQDHHSDVELQKSNILML 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 120 GPTGSGKTLLAQTLAKILQVPFAIADATSLTEAGYVGEDVENILLRLIQNADYDIPLAER 179

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +   E           ++N 
Sbjct: 180 GIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILE---------GTVANV 223

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
              GG                                         +    + +  D+  
Sbjct: 224 PPQGG----------------------------------------RKHPHQELIQIDTTN 243

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    + I AR     +G   E   +    +      +  +  +      F+
Sbjct: 244 ILFICGGAFAGLENVINARTGKKSMGFGAEIETQKEKEM------ANPFKKV--LPEDFV 295

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
             G         L+PE  GR PV V L  L+++    ILT+ ++ L  QY+  +  + + 
Sbjct: 296 KYG---------LIPEFVGRLPVVVTLDQLDEAALVKILTEPKNALTKQYESFLAMDHVE 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           LDF +D++ A+A  A+   +     GAR L+ ++E +++++ +      + +  ++  + 
Sbjct: 347 LDFDDDALKAIAHEALARKA-----GARGLRAIIEGIMKNVMYEVPSRDDVEKCIVTKDV 401

Query: 419 VRLH 422
           V  H
Sbjct: 402 VTAH 405


>gi|33357692|pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357693|pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357694|pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357705|pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357706|pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
 gi|33357707|pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
           (H. Influenzae)
          Length = 310

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 165/262 (62%), Gaps = 1/262 (0%)

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             N  + G   VG   ++   +K+  +   K       +    + ++    + D+     
Sbjct: 50  PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG-YVGKEVDSIIRDLTDSAG 108

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDH
Sbjct: 109 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM T
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 228

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ + FT D++  +A+ A  +N    +IGARRL TVMER+++ ISFSASD+  +TV ID
Sbjct: 229 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 288

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YV   +G+     D+  FIL
Sbjct: 289 AAYVADALGEVVENEDLSRFIL 310



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 100/140 (71%), Gaps = 7/140 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A         D V + 
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG-----AIDAVEQN 117

Query: 126 ASINAEERILDALVGKTATS 145
             +  +E  +D +  K   S
Sbjct: 118 GIVFIDE--IDKICKKGEYS 135


>gi|209521457|ref|ZP_03270165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
 gi|209498113|gb|EDZ98260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. H160]
          Length = 423

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 177/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 68  TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPG 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|90417349|ref|ZP_01225274.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330791|gb|EAS46060.1| ATP-dependent protease ATP-binding subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 428

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 162/402 (40%), Gaps = 81/402 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RDELMPKNILLVGPTGV 64
           P EI   LD Y+IGQ+ AKR +++A+ N ++R Q+          EL   NILL+GPTG 
Sbjct: 68  PAEIKGNLDAYVIGQERAKRILSVAVYNHYKRLQVSESDSSASEVELGKSNILLIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V  
Sbjct: 128 GKTLLAETLARMLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY- 186

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  VA              
Sbjct: 187 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------- 231

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+                  V   +I  V   
Sbjct: 232 -----------------------RKHPQQEFL---------------QVDTSNILFVCGG 253

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R    GIG S E   +D    +  +        ++      I  G  
Sbjct: 254 AFAGLEKV--IRDRSEKGGIGFSAEVTSKDSQKSIGET-------LLDVQPSDLIGYG-- 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L++     IL + ++ L  QY+ L   EG+ LD   
Sbjct: 303 -------LIPEFIGRLPVVATLQELDRDALVNILVEPKNALFKQYQSLFSMEGVELDLRR 355

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           D++DA+AD A+   +     GAR L++++E VL D  +    
Sbjct: 356 DALDAIADKAIERKT-----GARGLRSILETVLLDTMYRIPS 392


>gi|226227817|ref|YP_002761923.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
 gi|226091008|dbj|BAH39453.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas
           aurantiaca T-27]
          Length = 420

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 169/423 (39%), Gaps = 77/423 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILL 58
            +T   +PREI + LD+Y+IGQ  AK+A+++A+ N ++R    +  R+   EL   NILL
Sbjct: 53  SITQVPTPREIKNTLDQYVIGQDLAKKALSVAVYNHYKRINASSSAREDDVELDKSNILL 112

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTGVGKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+      V E  
Sbjct: 113 IGPTGVGKTLLAQTLARILDVPFTIADATTLTEAGYVGEDVENILVRLLQAGDFNVAECE 172

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  V         + I          S TR+V  + ++   +   E           +++
Sbjct: 173 RGIVY-------IDEIDKIARKSENPSITRDVSGEGVQQALLKILE---------GTVAS 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG         ++          K I       +  L +      I      R  I
Sbjct: 217 VPPQGGRKHPQQEYIQI--------NTKDILFICGGAFDGLEK------IIEARTGRRMI 262

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +      +    K                           ++  T +  +  D +L 
Sbjct: 263 GFGDEKPDTKVVSIGK---------------------------TTPKTPFAEVEPDDLL- 294

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV V L++L++     IL + ++ L  QY+ L   E +
Sbjct: 295 ----------RFGIIPELVGRLPVCVPLEALDEEALMSILKEPKNALTKQYQRLFDLEEV 344

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            + F E ++ A+A  A+   +     GAR L+ ++E  L D  F     ++   V +   
Sbjct: 345 KITFEESALRAVAAKALRRGT-----GARGLRAILEETLLDTMFELPTREDVVEVRVTEA 399

Query: 418 YVR 420
            V+
Sbjct: 400 AVQ 402


>gi|313831241|gb|EFS68955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL007PA1]
          Length = 429

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 169/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKTENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|307261755|ref|ZP_07543421.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868573|gb|EFN00384.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 419

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 169/424 (39%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 186 --------------------------------------FIDEID-KITRKSESPSITRDV 206

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +  P          +D   +       + 
Sbjct: 207 SGEGVQQALLKLIEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 249

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DKI     +   GIG   E     L    E   ++  +  +  + ++   
Sbjct: 250 ICGGAFAG-LDKIVEARSNKQGGIGFGAE-----LKKDKEREDLTELFKQVEPEDLVKF- 302

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L
Sbjct: 303 ----------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVEL 352

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS----DLQEKTVVIDA 416
            FT++++ A+A  +++  +     GAR L++++E +L D  ++      +   K V I  
Sbjct: 353 KFTKEALIAIAQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNVKKVTIGK 407

Query: 417 EYVR 420
             V 
Sbjct: 408 GCVE 411


>gi|327334168|gb|EGE75882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL097PA1]
          Length = 429

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 168/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q            D   EL   NIL++
Sbjct: 65  PRELCEFLDTWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|67923460|ref|ZP_00516937.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
 gi|67854695|gb|EAM49977.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501]
          Length = 444

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 168/428 (39%), Gaps = 95/428 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPKNILLVG 60
            P EI   LD Y+IGQ +AK+ +++A+ N ++R                EL   NILL+G
Sbjct: 81  KPMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKKGEQDQDNIELQKSNILLMG 140

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R 
Sbjct: 141 PTGSGKTLLAQTLAQILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRG 200

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 201 II--------------------------------------YIDEID-KIARKSENPSITR 221

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +   +I  
Sbjct: 222 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSNILF 266

Query: 241 VENYGIVFLDEF--DKIVARDSG---NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           +     V LD     +I  +  G    G G S+E    DL+  VE   +  K+G I    
Sbjct: 267 ICGGAFVGLDRVIEQRIGKKSMGFVRPGEGQSKEERTADLMQRVEPDDL-VKFGMI---- 321

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                             PE  GR PV   L  L +     ILT   + L+ QY++L+  
Sbjct: 322 ------------------PEFVGRIPVMAALNPLTEETLIAILTKPRNALVKQYQKLLNM 363

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L+F+ +++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ +  +I
Sbjct: 364 DNVELEFSPEAVKAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVQKCMI 418

Query: 415 DAEYVRLH 422
             E V   
Sbjct: 419 TGEMVEKR 426


>gi|229062167|ref|ZP_04199491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH603]
 gi|228717150|gb|EEL68826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH603]
          Length = 419

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALVEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|289426538|ref|ZP_06428281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289428633|ref|ZP_06430316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|295131120|ref|YP_003581783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|289153266|gb|EFD01984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK187]
 gi|289158031|gb|EFD06251.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J165]
 gi|291376588|gb|ADE00443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes SK137]
 gi|313763510|gb|EFS34874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA1]
 gi|313773447|gb|EFS39413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL074PA1]
 gi|313793900|gb|EFS41924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA1]
 gi|313801290|gb|EFS42541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA2]
 gi|313808031|gb|EFS46512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA2]
 gi|313811500|gb|EFS49214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA1]
 gi|313816692|gb|EFS54406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA1]
 gi|313819597|gb|EFS57311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA2]
 gi|313822078|gb|EFS59792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA1]
 gi|313823688|gb|EFS61402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA2]
 gi|313826012|gb|EFS63726.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA1]
 gi|313829480|gb|EFS67194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL063PA2]
 gi|313834853|gb|EFS72567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL056PA1]
 gi|313839987|gb|EFS77701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL086PA1]
 gi|314914810|gb|EFS78641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA4]
 gi|314920717|gb|EFS84548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA3]
 gi|314924728|gb|EFS88559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL036PA3]
 gi|314930597|gb|EFS94428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL067PA1]
 gi|314954448|gb|EFS98854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA1]
 gi|314957525|gb|EFT01628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA1]
 gi|314961992|gb|EFT06093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA2]
 gi|314963745|gb|EFT07845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA1]
 gi|314974117|gb|EFT18213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA1]
 gi|314976593|gb|EFT20688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL045PA1]
 gi|314978952|gb|EFT23046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA2]
 gi|314984412|gb|EFT28504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA1]
 gi|314990962|gb|EFT35053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA3]
 gi|315079594|gb|EFT51587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL053PA2]
 gi|315081177|gb|EFT53153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL078PA1]
 gi|315083640|gb|EFT55616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL027PA2]
 gi|315087059|gb|EFT59035.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL002PA3]
 gi|315089234|gb|EFT61210.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL072PA1]
 gi|315095256|gb|EFT67232.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL038PA1]
 gi|315099138|gb|EFT71114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL059PA2]
 gi|315100379|gb|EFT72355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL046PA1]
 gi|327328481|gb|EGE70243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA2]
 gi|327329653|gb|EGE71409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL096PA3]
 gi|327444268|gb|EGE90922.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA2]
 gi|327444852|gb|EGE91506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL043PA1]
 gi|327446338|gb|EGE92992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL013PA2]
 gi|327452074|gb|EGE98728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL092PA1]
 gi|327454889|gb|EGF01544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA3]
 gi|327457825|gb|EGF04480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL083PA2]
 gi|328752327|gb|EGF65943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL020PA1]
 gi|328755277|gb|EGF68893.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL087PA1]
 gi|328758242|gb|EGF71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA2]
 gi|328760010|gb|EGF73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL099PA1]
 gi|332675997|gb|AEE72813.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Propionibacterium acnes 266]
          Length = 429

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 169/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|170016865|ref|YP_001727784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
 gi|238688952|sp|B1MXT8|CLPX_LEUCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169803722|gb|ACA82340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
          Length = 415

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 169/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P +IV+EL+ Y+IGQ+DAK+ +A+A+ N ++R           EL   NI L+GPTG G
Sbjct: 64  TPHQIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENVSPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   +           
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQSANFDI----------- 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               A+  I+                            EID ++A  S ++S      G 
Sbjct: 173 --EAAQHGII-------------------------YIDEID-KIAKKSENVSITRDVSGE 204

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 205 GVQQALLKLLEGTNASVPPQGGRKHPQQE------------LIQVDT---TNILFIVGGA 249

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +D    I  R     IG   +     +    E      +                  
Sbjct: 250 FAGIDTI--IKERLGERVIGFGSDANDNAVALDSENILEHVQ----------------PE 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + + L F  +
Sbjct: 292 DMTKFGLIPEFIGRLPIVTVLDELKVDDLTKILTEPKNALIKQYTALLGLDDVELVFQPE 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++A+A++A+  ++     GAR L++++E V++DI F      + + V+I    V+
Sbjct: 352 ALEAMAELAIKRHT-----GARGLRSIIESVMKDIMFDIPSRDDVEKVIITKASVQ 402


>gi|313884248|ref|ZP_07818014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620695|gb|EFR32118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 415

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 85/418 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
             P EI++ LD+Y++GQ+ AK+ +++A+ N ++R     D ++E    L   NI L+GPT
Sbjct: 61  LKPNEIMTILDQYVVGQKQAKKNLSVAVYNHYKRIMHNQDKQEEDEVDLQKSNIALIGPT 120

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE ++  LV  A   V +      
Sbjct: 121 GSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENVLLKLVQAADYDVAK------ 174

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                  AE+ I+                            EID +++  S ++S     
Sbjct: 175 -------AEKGII-------------------------YIDEID-KISRKSENVSITRDV 201

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  L         K   +                   + D +  D+ Q++ 
Sbjct: 202 SGEGVQQALLKILEGTTANIPPKGGRKHP-----------------NQDFIQMDTSQILF 244

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F D  + I+      G  V   GV                 G  +    L I   
Sbjct: 245 IVGGAF-DGIETIIK--ERLGSKVIGFGVSN---------------GKFDESKSL-IQHA 285

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P+   L  L + D   ILT  ++ L+ QY++L   + + L+F
Sbjct: 286 TPEDLLKFGLIPEFIGRIPIMAVLDKLTEDDLVEILTKPKNALVKQYQKLFDIDHVKLEF 345

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
            ED++ A+A +A+   +     GAR L++++E V+ D+ F      +   +VI  + V
Sbjct: 346 KEDALRAIAHLAIERGT-----GARGLRSIIESVMLDVMFDVPSRDDVAKIVITKDNV 398


>gi|30022560|ref|NP_834191.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC
           14579]
 gi|206969732|ref|ZP_03230686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH1134]
 gi|218232453|ref|YP_002369279.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           B4264]
 gi|218899640|ref|YP_002448051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9842]
 gi|228903001|ref|ZP_04067141.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 4222]
 gi|228910307|ref|ZP_04074124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 200]
 gi|228923225|ref|ZP_04086515.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954755|ref|ZP_04116777.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228981163|ref|ZP_04141463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|229071981|ref|ZP_04205191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus F65185]
 gi|229081738|ref|ZP_04214231.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock4-2]
 gi|229129764|ref|ZP_04258731.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-Cer4]
 gi|229147042|ref|ZP_04275402.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST24]
 gi|229180748|ref|ZP_04308086.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 172560W]
 gi|229192684|ref|ZP_04319643.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 10876]
 gi|296504963|ref|YP_003666663.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis
           BMB171]
 gi|46576498|sp|Q817Q2|CLPX_BACCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706577|sp|B7IIY3|CLPX_BACC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706578|sp|B7HEA4|CLPX_BACC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29898118|gb|AAP11392.1| ATP-dependent clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 14579]
 gi|206735420|gb|EDZ52588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH1134]
 gi|218160410|gb|ACK60402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus B4264]
 gi|218542659|gb|ACK95053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus G9842]
 gi|228590774|gb|EEK48634.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus ATCC 10876]
 gi|228602726|gb|EEK60209.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 172560W]
 gi|228636430|gb|EEK92900.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-ST24]
 gi|228653680|gb|EEL09551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus BDRD-Cer4]
 gi|228701583|gb|EEL54076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock4-2]
 gi|228711140|gb|EEL63105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus F65185]
 gi|228778363|gb|EEM26630.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|228804953|gb|EEM51550.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836431|gb|EEM81782.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228849367|gb|EEM94204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 200]
 gi|228856677|gb|EEN01197.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis IBL 4222]
 gi|296326015|gb|ADH08943.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis
           BMB171]
 gi|326942251|gb|AEA18147.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 419

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|307297283|ref|ZP_07577089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916543|gb|EFN46925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 403

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 174/416 (41%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I  ELD+Y+IGQ++AK+ +++++ N ++R     D   E+   NI+LVGPTG GKT
Sbjct: 56  TPADIKKELDKYVIGQENAKKTISVSVYNHYKRVFNDVD-DVEIEKSNIMLVGPTGSGKT 114

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++   +     
Sbjct: 115 LIARVLARILDVPFAIADATPLTEAGYVGEDVENIVLRLLQSANYDVEKAQLGII----- 169

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               EID ++A  S + S      G  V
Sbjct: 170 ---------------------------------YIDEID-KIARKSPNPSITRDVSGEGV 195

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +         +   +   Q+                  V   +I  +      
Sbjct: 196 QQALLKIVEGTTANVPPQGGRKHPYQEFIK---------------VDTSNILFIVGGAFD 240

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD   K    DS  G G   +G  +  L  V    V                       
Sbjct: 241 GLDSVIKQRVLDSSMGFGAKVKGKNQLRLGEVLQQVVPDDLIQ----------------- 283

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GRFPV   L  L+  D + I+++  + ++ QY+ L+  +G+ L+F++D++
Sbjct: 284 --YGLIPEFVGRFPVLAALNDLDVEDLKRIMSEPRNAILKQYQRLLGLDGVELEFSDDAM 341

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+A+ A+   +     GAR L++V+E+V+ DI F    +   + VVI+ + +  +
Sbjct: 342 TAIAERAMKRGT-----GARALKSVIEQVMLDIMFDIPTMNNVEKVVINEDVISKN 392


>gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way
           CG']
          Length = 426

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 167/423 (39%), Gaps = 89/423 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD+Y++GQ+ AKR +++A+ N ++R        D EL   NIL++GPTG G
Sbjct: 65  LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDVELQKGNILMIGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++ R  V   
Sbjct: 125 KTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAERGIVY-- 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K ++  VA+              
Sbjct: 183 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLVEGTVANVPPQGG-------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                              ++          V   +I  +    
Sbjct: 228 ------------------------------RKHPHQEFI-------QVDTSNILFICGGA 250

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            + LD    I  R S   +G   E                     I T            
Sbjct: 251 FIGLDNI--ISQRLSSKNLGFGAE---------------------IRTPEDRKRTGELLA 287

Query: 306 VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             RP D     L+PE  GRFPV   L  L+++ F  ILT+ ++ L+ Q+++L   E + L
Sbjct: 288 NVRPDDLLKYGLIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
             TE ++ A+A  A    +     GAR L+ ++E V+ D+ +    +Q    V++  E +
Sbjct: 348 RMTEGALKAIAHKAFIQKT-----GARGLRAILEEVMLDLMYEIPSVQNVLEVLVTEETI 402

Query: 420 RLH 422
             H
Sbjct: 403 NNH 405


>gi|319440921|ref|ZP_07990077.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           variabile DSM 44702]
          Length = 424

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 173/422 (40%), Gaps = 90/422 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--------LPADLRDELMPKNILLVG 60
           P  I   LD Y+IGQ DAKR +A+A+ N ++R +          +D   EL   NIL++G
Sbjct: 62  PAAITRFLDEYVIGQDDAKRTLAVAVYNHYKRTRAESSDATARRSDDEVELSKSNILMLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++  
Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVARAQ-- 179

Query: 121 EVREQASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               Q  I  +E  LD +  K+   S TR+V  + ++   +   E  +            
Sbjct: 180 ----QGIIYVDE--LDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGG---- 229

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++       K +   V   +  L +                  
Sbjct: 230 -------------RKHPNQEFIQFDTKNVLFIVSGAFAGLEKV----------------- 259

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                          I  R    G+G   E                   G  + +   F 
Sbjct: 260 ---------------ISDRRGKKGVGFGAEIR-----------------GKADEEKDPFR 287

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                 + +   L+PE+ GR PV  H+  L+      ILT+ +++L+ QY+ L + +G+ 
Sbjct: 288 YVEPEDLVK-FGLIPELIGRLPVITHVGHLDSDALVKILTEPKNSLVRQYQRLFEMDGVR 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L F ED++ A+A+ A++  +     GAR L++++E +L  + FS  D      V+I  + 
Sbjct: 347 LSFEEDALRAIAEKALDRGT-----GARGLRSIVESILLPVMFSIPDDTGTGEVIITGDS 401

Query: 419 VR 420
           VR
Sbjct: 402 VR 403


>gi|300788575|ref|YP_003768866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis
           mediterranei U32]
 gi|299798089|gb|ADJ48464.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis
           mediterranei U32]
          Length = 431

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 177/438 (40%), Gaps = 97/438 (22%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--------LPADLRDELM 52
           +KL     P +I   L++YIIGQ+DAKR +A+A+ N ++R Q           +   EL 
Sbjct: 56  VKLDELPKPADIHEFLEQYIIGQEDAKRTLAVAVYNHYKRIQADDKAGPKDSKEESVELA 115

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NIL++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A  
Sbjct: 116 KSNILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADY 175

Query: 113 IVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+ +       DEV + A                  S TR+V  + ++   +   E   
Sbjct: 176 DVKRAETGIIYIDEVDKIARK------------SENPSITRDVSGEGVQQALLKILEGT- 222

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               +         P    + I   + LF               V   +  L +      
Sbjct: 223 --TASVPPQGGRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEK------ 260

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           I  + V +  +                               G +      +E S V + 
Sbjct: 261 IINERVGKRGLGF-----------------------------GAEIRTKSEIEESDVFS- 290

Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
               +T     I  G         L+PE  GR PV   +  L+K     ILT   + L+ 
Sbjct: 291 ----DTMPEDLIKFG---------LIPEFIGRLPVVATVNHLDKDSLVNILTQPRNALVK 337

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QYK+L + + + L+FT+ +++A+AD AV   +     GAR L+ +ME VL+ + +     
Sbjct: 338 QYKKLFEMDNVELEFTKTALEAIADQAVLRGT-----GARGLRAIMEEVLQPVMYDIPSR 392

Query: 408 QEK-TVVIDAEYVRLHIG 424
            +   VVI  + VR ++ 
Sbjct: 393 DDVAKVVITEQTVRENVN 410


>gi|146328686|ref|YP_001209153.1| ATP-dependent protease ATP-binding subunit ClpX [Dichelobacter
           nodosus VCS1703A]
 gi|146232156|gb|ABQ13134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dichelobacter
           nodosus VCS1703A]
          Length = 425

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 174/420 (41%), Gaps = 81/420 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P+EI S LDRYIIGQ  AK+++A+A+ N ++R +L  +  D    E+   NIL++G TG
Sbjct: 70  TPQEIKSFLDRYIIGQDQAKKSLAVAVYNHYKRLRLNQNAEDDDGIEIAKSNILMIGSTG 129

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    PF   + T  TE GYVG +VE II+ L+    N V ++ R  + 
Sbjct: 130 SGKTLLAQTLAKCLNVPFAIADATALTEAGYVGDDVETIIQKLLMNCDNDVTQAERGIIY 189

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I        + S TR+V  + ++   +   E  I                
Sbjct: 190 -------IDEIDKIARKGDSASITRDVSGEGVQQALLKLVEGTIAAVPPHGG-------- 234

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+               M  V   +I  +  
Sbjct: 235 ------------------------RKHPQQE---------------MTHVDTRNILFICG 255

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   I  R     IG +     R    LVEG+           D + F     
Sbjct: 256 GAFDGLEKI--IAKRTDKGSIGFN--AAVRGKNSLVEGAEAQLLKQVEPEDLVKF----- 306

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR P+   L +L++S    ILT+ ++ ++ Q+ ++   E + L+F 
Sbjct: 307 -------GLIPEFVGRLPIVTLLDTLDESALVRILTEPKNAIVRQFSKIFSYEQVDLEFE 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS--DLQEKTVVIDAEYVRL 421
           + ++ A+A  A+   +     GAR L++++E++L D  F         + +VI AE V  
Sbjct: 360 DAALTAIAQKAIARKT-----GARGLRSIVEQLLLDTMFELPTTSTDVEKIVISAENVND 414


>gi|317139980|ref|XP_003189221.1| ATP-dependent Clp protease [Aspergillus oryzae RIB40]
          Length = 627

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/462 (22%), Positives = 187/462 (40%), Gaps = 77/462 (16%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                 
Sbjct: 131 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDHS 190

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GP+GVGKT +++ LA++   PF   + T FT+ GY+G + E  +  L
Sbjct: 191 STIQLEKSNILLLGPSGVGKTLMAKTLAKVLSVPFSISDCTPFTQAGYIGEDAEVCVHRL 250

Query: 107 VDVAINIVRESRR-----DEVREQAS-----------INAEERILDALVGKTATSNTREV 150
           +  A   V ++ R     DEV + A+              ++ +L  + G      T +V
Sbjct: 251 LAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVGGEGVQQALLKIIEGT-----TVQV 305

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+ ++   +    +     ++S + N   P     G+    E+++      R   I  
Sbjct: 306 QAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPPSNGGGMSQKGEVYN-----VRTDNILF 358

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-----IG 265
                +  L +      + MD + R SI   +        +     +  + N       G
Sbjct: 359 IFSGAFVGLHK------VVMDRISRGSIGFGQPVRTPSNSDERPGQSTTANNQPVPIVPG 412

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRF 320
              E + +  LP    +S  +  G    +   F    A  +  P DL     +PE+ GR 
Sbjct: 413 SEEEALYKKHLPFFTSASPESPDG----EPTYF---NALDLINPTDLQNYGFIPELVGRV 465

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L +L +     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + + 
Sbjct: 466 PVTAALSTLTQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT- 524

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
               GAR L+T ME +L D  +       K V++        
Sbjct: 525 ----GARALRTEMETILSDAMYETPGSSVKFVLVTESVAARK 562


>gi|229140470|ref|ZP_04269025.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
 gi|228643031|gb|EEK99307.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
          Length = 218

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           +  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+
Sbjct: 1   MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL
Sbjct: 60  VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LE
Sbjct: 120 IEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218


>gi|258544427|ref|ZP_05704661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Cardiobacterium hominis ATCC 15826]
 gi|258520316|gb|EEV89175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Cardiobacterium hominis ATCC 15826]
          Length = 415

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/418 (24%), Positives = 176/418 (42%), Gaps = 80/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGV 64
           +P EI + LD YIIGQ  AK+A+A+A+ N ++R    Q  AD   E++  NIL++G TG 
Sbjct: 62  TPSEIKAFLDDYIIGQHRAKKALAVAVYNHYKRLHLNQQKADDGVEIVKSNILMIGSTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I++ L+    N V  + R  +  
Sbjct: 122 GKTLLAQTLAKCLDVPFAIADATALTEAGYVGEDVETIVQKLLMNCDNDVTRAERGIIY- 180

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K ++  VA              
Sbjct: 181 ------IDEIDKIARKGENLSITRDVSGEGVQQALL--KLVEGTVAAVPPQGG------- 225

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+            LI    V+  +I  +   
Sbjct: 226 -----------------------RKHPQQE------------LIH---VNTTNILFICGG 247

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R    GIG               G+ V +K    + ++   +     
Sbjct: 248 AFAGLEKL--IAKRTEQGGIGF--------------GAHVHSK-AEADENNNRLLQQIEP 290

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+   L +L++     ILT+ ++ ++ Q++++   E + L+FT 
Sbjct: 291 EDLVKFGLIPEFVGRLPIIALLDTLDEDALIHILTEPKNAIVRQFEKIFGFENVALEFTP 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           D++ A+A  A+   +     GAR L++++E+ L D  F+  D ++   V + A  +  
Sbjct: 351 DALQAIAQKAITRKT-----GARGLRSIVEQTLLDTMFNLPDQKDIDKVTVTAATILE 403


>gi|116670949|ref|YP_831882.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter sp.
           FB24]
 gi|166214753|sp|A0JXL2|CLPX_ARTS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116611058|gb|ABK03782.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           sp. FB24]
          Length = 429

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 174/428 (40%), Gaps = 93/428 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKN 55
            PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q                   E+   N
Sbjct: 63  KPREIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 123 ILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 182

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +             AE+ I+                            EID +++  S +
Sbjct: 183 K-------------AEQGII-------------------------YIDEID-KISRKSEN 203

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            S      G  V    L  L   V     +   +                     + +  
Sbjct: 204 PSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQI 246

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+  ++      F    D I +R    GIG           PL E  + S  YG +  + 
Sbjct: 247 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGA--------PLNEVKNNSDSYGEVMPED 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L              L+PE  GR PV   + +L++     IL+  ++ L+ QY+++ + 
Sbjct: 299 LLKF-----------GLIPEFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQL 347

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           +G+ L F ++++D +AD A+   +     GAR L+ +ME VL  + F      +  +VVI
Sbjct: 348 DGVELLFDDEALDVIADQALERGT-----GARGLRAIMEEVLLPVMFDLPSRDDIASVVI 402

Query: 415 DAEYVRLH 422
            A+ V   
Sbjct: 403 TADVVAKK 410


>gi|295676518|ref|YP_003605042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
 gi|295436361|gb|ADG15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1002]
          Length = 423

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 177/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 68  TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|323697669|ref|ZP_08109581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. ND132]
 gi|323457601|gb|EGB13466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans ND132]
          Length = 418

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 175/431 (40%), Gaps = 93/431 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPT 62
             P+EI   LD+Y+IGQ+ AK+ +++A+ N ++R    A        E+   NILL+GPT
Sbjct: 62  LPPQEIKELLDQYVIGQEQAKKILSVAVHNHYKRVFYAAANSGGDDVEIDKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R  +
Sbjct: 122 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIDAASRGII 181

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID +VA      S     
Sbjct: 182 --------------------------------------YIDEID-KVARKGDSPSITRDV 202

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +         K   +   Q+             I MDT    +I  + 
Sbjct: 203 SGEGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDT---SNILFIL 247

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
               + LD+  +   + SG G G   E  +   L  + G                     
Sbjct: 248 GGAFIGLDKIVQQRKQGSGMGFGAKVEAKKEMGLGELFG--------------------- 286

Query: 303 AFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
              ++ P D     L+PE  GR PV+  L+ L + D   ILT+ ++ LI QY++L + + 
Sbjct: 287 ---MAEPMDLIKFGLIPEFVGRIPVQTALEELTEEDLVRILTEPKNALIKQYRKLFELDK 343

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L FTE+++ A+A  A+   +     GAR L+ V+E+ + DI +    + + +  VI+A
Sbjct: 344 VELTFTENALTAIAKQAIERRT-----GARGLRNVLEKTMLDIMYKLPAMPDVRECVINA 398

Query: 417 EYVRLHIGDFP 427
             V   +    
Sbjct: 399 AVVEKDMDPLL 409


>gi|307264861|ref|ZP_07546423.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920119|gb|EFN50331.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 226

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/226 (48%), Positives = 163/226 (72%)

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           + +    L  +E+  LIDMD V  ++I+  EN GI+F+DE DKI +     G  VSREGV
Sbjct: 1   MYEAKRILESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGV 60

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRD+LP++EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K
Sbjct: 61  QRDILPIIEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTK 120

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            DF  IL + ++ L  QY+EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL T
Sbjct: 121 EDFIRILKEPKNALAKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHT 180

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           VME++ E++SF+A +L  + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 181 VMEKLFEELSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 226


>gi|53805231|ref|YP_113049.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|61211759|sp|Q60BE7|CLPX2_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2
 gi|53758992|gb|AAU93283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 428

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 170/425 (40%), Gaps = 82/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
            P+EI   LD Y+IGQ+ AKR +++A+ N ++R +           EL   NILL+GPTG
Sbjct: 67  KPKEIKKVLDEYVIGQEKAKRILSVAVYNHYKRLRAQQTHSKKNEVELAKSNILLIGPTG 126

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT ++  LARL   PF   + T  TE GYVG +VE II+ ++      V ++ +  V 
Sbjct: 127 SGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKILQKCDYDVEKAEQGIVY 186

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K I+  VA             
Sbjct: 187 -------IDEIDKISRKADNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG------ 231

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  V+  +I  +  
Sbjct: 232 ------------------------RKHPQQEFL---------------QVNTANILFICG 252

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                L++   I +R    GIG + +   +D        S +      + +    I  G 
Sbjct: 253 GAFAGLEKI--IRSRSEQGGIGFAADVKSKD-------DSRNVGEVLADVEAEDLIRYG- 302

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L+ L+++    ILT+ ++ L+ QY+ L + E   L+  
Sbjct: 303 --------LIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIR 354

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           +D++ A+A  A+   +     GAR L+T++E  L D  +     +    VV+D + +   
Sbjct: 355 DDALGAIARKAMARKT-----GARGLRTILEHTLLDTMYELPSSERISKVVVDEKVINGE 409

Query: 423 IGDFP 427
                
Sbjct: 410 SEPLM 414


>gi|268611240|ref|ZP_06144967.1| ATP-dependent protease ATP-binding subunit ClpX [Ruminococcus
           flavefaciens FD-1]
          Length = 435

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 168/422 (39%), Gaps = 90/422 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTG 63
             P EI   LD Y+IGQ +AK+++A+A+ N ++R        ++   L   N+LL+GPTG
Sbjct: 68  LKPVEIKEYLDEYVIGQDEAKKSLAVAVYNHYKRITAQEQKDEDGIDLQKSNVLLLGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+  A   ++ + +  + 
Sbjct: 128 VGKTFLAQTLAKLLNVPFAIADATTITEAGYVGDDVENVLLRLIQAADYDIKAAEKGIIY 187

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I         TS TR+V  + ++   +   E           +SN    G
Sbjct: 188 -------IDEIDKIARKSENTSLTRDVSGEGVQQALLKIIE---------GTVSNVPPQG 231

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G       + ++          K I       +  L +                      
Sbjct: 232 GRKHPNQEVIQI--------NTKNILFICGGAFDGLEKQ--------------------- 262

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS---TKYGSINTDHILFIA 300
                      I  R   + IG   E   R     +    V     K+G +         
Sbjct: 263 -----------IQKRIGKSPIGFGGELKARAEEENIFKKVVPKDLVKFGMV--------- 302

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                        PE  GR PV   L+ L+++    ILT+ ++ LI QYK+L   +GI L
Sbjct: 303 -------------PEFVGRLPVISVLEELDENSLVRILTEPKNALIKQYKKLFSYDGIEL 349

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +  +D++  +A  A+   +     GAR L+++ME +L D  FS   D     VV+  + V
Sbjct: 350 EIEDDALIEIAKKAIAQKT-----GARGLRSIMEGILLDTMFSVPSDGSVSKVVVKKDCV 404

Query: 420 RL 421
             
Sbjct: 405 TD 406


>gi|113474440|ref|YP_720501.1| ATP-dependent protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
 gi|123057080|sp|Q118P6|CLPX_TRIEI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110165488|gb|ABG50028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Trichodesmium
           erythraeum IMS101]
          Length = 449

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/432 (22%), Positives = 174/432 (40%), Gaps = 86/432 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELM 52
           + ++    PREI + LD ++IGQ++ K+ +++A+ N ++R            +    EL 
Sbjct: 76  LSISQIPKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQ 135

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ VA  
Sbjct: 136 KSNILLIGPTGCGKTLLAQTLADLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADL 195

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V E++R  +                                         EID ++A  
Sbjct: 196 EVDEAQRGII--------------------------------------YIDEID-KIARK 216

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S + S      G  V    L  L   V     +   +   Q C                 
Sbjct: 217 SENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------Q 261

Query: 233 VHRDSIQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
           +   +I  +     V L++  D+ + + S   I  S +  Q     +V+           
Sbjct: 262 IDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVD----------- 310

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                  +     +      L+PE+ GR P+   ++ L++     ILT  ++ L+ QY++
Sbjct: 311 ------LMKQMEPNDLVKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQK 364

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-K 410
           L++ + + L+F ED++ A+A  A    +     GAR L+ ++E ++ D+ +     ++  
Sbjct: 365 LLRMDNVKLEFEEDAVRAIAKEAFRRKT-----GARALRGIVEELMLDVMYELPSRKDVS 419

Query: 411 TVVIDAEYVRLH 422
              I  E V   
Sbjct: 420 RCTITKEMVEKR 431


>gi|229087037|ref|ZP_04219191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-44]
 gi|228696300|gb|EEL49131.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-44]
          Length = 419

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
 gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola
           taffensis DSM 16823]
          Length = 406

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 170/419 (40%), Gaps = 80/419 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I   LD Y+IGQ DAK+ +++A+ N ++R         E+   N++LVG TG GK
Sbjct: 59  LKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEKSNVILVGRTGTGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V+ ++   V    
Sbjct: 119 TLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAADYNVQAAQHGIV---- 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 175 ----------------------------------FIDEID-KIARKSDNPSITRDVSGEG 199

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    +   +   QK               M  +   +I  V     
Sbjct: 200 VQQALLKLLEGSVVNVPPQGGRKHPEQK---------------MIAIDTKNILFVCGGAF 244

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++    I +R +   IG               GS V+ K   ++ D+  F+       
Sbjct: 245 DGIERI--IASRVNRQTIGF--------------GSQVTEK---VDEDN--FLKYITPTD 283

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GRFPV  +L+ L+    + I+T+ ++ +I QY  L + +GI L F  D 
Sbjct: 284 VKSYGLIPELIGRFPVLTYLEPLDAKSLKRIITEPKNAIIKQYMRLFEIDGIRLKFDADV 343

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + + A+        +GAR L+++ E +L D  +      E    +D EY +     
Sbjct: 344 LDFIVEKAIEFK-----LGARGLRSICEAILTDAMYELPSKNETEFRVDLEYAKAQFSK 397


>gi|322515315|ref|ZP_08068312.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118691|gb|EFX90903.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 419

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 170/424 (40%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 66  TPHEIHAHLDEYVIGQEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 186 --------------------------------------FIDEID-KITRKSESPSITRDV 206

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +  P          +D   +       + 
Sbjct: 207 SGEGVQQALLKLIEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 249

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DK+     +   GIG   E     L    E   ++  +  +  + ++   
Sbjct: 250 ICGGAFAG-LDKLVEARTNKQGGIGFGAE-----LKKDKEREDLTELFKQVEPEDLV--- 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L  L++     ILT+ ++ +I QY+ L + EG+ L
Sbjct: 301 --------RFGLIPELIGRLPVVTPLPELDEEALIQILTEPKNAIIKQYQALFQMEGVEL 352

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS----DLQEKTVVIDA 416
            FT+D++ A+A+ +++  +     GAR L++++E +L D  ++      +   K V I  
Sbjct: 353 KFTKDALIAIAEKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNVKKVTIGK 407

Query: 417 EYVR 420
           + V 
Sbjct: 408 DCVE 411


>gi|30264540|ref|NP_846917.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Ames]
 gi|42783609|ref|NP_980856.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           ATCC 10987]
 gi|47530003|ref|YP_021352.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49187364|ref|YP_030616.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Sterne]
 gi|49481515|ref|YP_038522.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52141034|ref|YP_085795.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L]
 gi|65321841|ref|ZP_00394800.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Bacillus
           anthracis str. A2012]
 gi|165872008|ref|ZP_02216649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0488]
 gi|167636206|ref|ZP_02394510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0442]
 gi|167640744|ref|ZP_02399004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0193]
 gi|170688644|ref|ZP_02879849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0465]
 gi|170708362|ref|ZP_02898806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0389]
 gi|177653998|ref|ZP_02936039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0174]
 gi|190566821|ref|ZP_03019737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034498|ref|ZP_03101907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus W]
 gi|196039273|ref|ZP_03106579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus NVH0597-99]
 gi|196044901|ref|ZP_03112135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB108]
 gi|206975965|ref|ZP_03236875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus H3081.97]
 gi|217961964|ref|YP_002340534.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus
           AH187]
 gi|218905674|ref|YP_002453508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH820]
 gi|222097918|ref|YP_002531975.1| ATP-dependent protease ATP-binding subunit clpx [Bacillus cereus
           Q1]
 gi|225866453|ref|YP_002751831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB102]
 gi|227817253|ref|YP_002817262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. CDC 684]
 gi|228948186|ref|ZP_04110470.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229093569|ref|ZP_04224670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-42]
 gi|229124012|ref|ZP_04253204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 95/8201]
 gi|229198601|ref|ZP_04325303.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1293]
 gi|229600744|ref|YP_002868756.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0248]
 gi|254687038|ref|ZP_05150896.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724600|ref|ZP_05186383.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. A1055]
 gi|254736576|ref|ZP_05194282.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Western North America USA6153]
 gi|254741614|ref|ZP_05199301.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Kruger B]
 gi|254754788|ref|ZP_05206823.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Vollum]
 gi|254757620|ref|ZP_05209647.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis
           str. Australia 94]
 gi|301055979|ref|YP_003794190.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI]
 gi|46576502|sp|Q81LB9|CLPX_BACAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211433|sp|Q633X2|CLPX_BACCZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211498|sp|Q6HD54|CLPX_BACHK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211550|sp|Q72ZV4|CLPX_BACC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706576|sp|B7JQ65|CLPX_BACC0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706579|sp|B7HQN2|CLPX_BACC7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763832|sp|C3P9F7|CLPX_BACAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763833|sp|C3L704|CLPX_BACAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763834|sp|C1ETR8|CLPX_BACC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763835|sp|B9IZ47|CLPX_BACCQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|30259198|gb|AAP28403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. Ames]
 gi|42739538|gb|AAS43464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus ATCC 10987]
 gi|47505151|gb|AAT33827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181291|gb|AAT56667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. Sterne]
 gi|49333071|gb|AAT63717.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974503|gb|AAU16053.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus
           E33L]
 gi|164712298|gb|EDR17834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0488]
 gi|167511316|gb|EDR86702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0193]
 gi|167528427|gb|EDR91195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0442]
 gi|170126737|gb|EDS95620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0389]
 gi|170667330|gb|EDT18088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0465]
 gi|172081053|gb|EDT66131.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0174]
 gi|190561812|gb|EDV15781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis Tsiankovskii-I]
 gi|195993040|gb|EDX56999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus W]
 gi|196024389|gb|EDX63062.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB108]
 gi|196029900|gb|EDX68501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus NVH0597-99]
 gi|206745717|gb|EDZ57114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus H3081.97]
 gi|217063701|gb|ACJ77951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH187]
 gi|218538609|gb|ACK91007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus AH820]
 gi|221241976|gb|ACM14686.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus
           Q1]
 gi|225787496|gb|ACO27713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cereus 03BB102]
 gi|227002540|gb|ACP12283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. CDC 684]
 gi|228584883|gb|EEK42999.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus m1293]
 gi|228659314|gb|EEL14962.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus 95/8201]
 gi|228689778|gb|EEL43584.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus Rock3-42]
 gi|228811544|gb|EEM57881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229265152|gb|ACQ46789.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           anthracis str. A0248]
 gi|300378148|gb|ADK07052.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328376|gb|ADY23636.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 419

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ ++ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETV 397


>gi|269795729|ref|YP_003315184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter
           keddieii DSM 10542]
 gi|269097914|gb|ACZ22350.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter
           keddieii DSM 10542]
          Length = 427

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/425 (24%), Positives = 179/425 (42%), Gaps = 90/425 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--------DELMPKNILLV 59
            PR I   L++YIIGQ+ AKR++A+A+ N ++R Q     R         ++   NILL+
Sbjct: 63  KPRAIFDFLEQYIIGQEGAKRSLAVAVYNHYKRIQAGEGARSVGEDASQVDIAKSNILLI 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++  
Sbjct: 123 GPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAET 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +                                         E+D ++A  S + S  
Sbjct: 183 GII--------------------------------------YIDEVD-KIARKSENPSIT 203

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L         +   +   Q+             I +DT    ++ 
Sbjct: 204 RDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQE------------FIQIDT---TNVL 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       LDE   I +R   +GIG             +  +  +  +G +  + +L  
Sbjct: 249 FIVAGAFAGLDEI--ISSRAGKHGIGFGAP---------LHTADAADAFGDVMPEDLLKF 297

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   +  L+++    ILT+  + L+ QY+ + + +G+ 
Sbjct: 298 -----------GLIPEFIGRVPVITTVTPLDQTSLVRILTEPRNALVKQYQRMFEIDGVE 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+FT+D++ A+AD A+   +     GAR L+ +ME VL+ + F      + + VV+  E 
Sbjct: 347 LEFTDDAVAAIADQALLRGT-----GARGLRAIMEEVLQQVMFEVPSRDDVERVVVTGEA 401

Query: 419 VRLHI 423
           V  ++
Sbjct: 402 VLENV 406


>gi|32035049|ref|ZP_00135115.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208745|ref|YP_001053970.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae L20]
 gi|190150598|ref|YP_001969123.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250640|ref|ZP_07336837.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252092|ref|ZP_07338261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246196|ref|ZP_07528277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248302|ref|ZP_07530327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252912|ref|ZP_07534800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255176|ref|ZP_07536994.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257344|ref|ZP_07539114.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259614|ref|ZP_07541338.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263942|ref|ZP_07545545.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097537|gb|ABN74365.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915729|gb|ACE61981.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649074|gb|EFL79261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650628|gb|EFL80787.1| ATP-dependent protease ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852805|gb|EFM85029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855172|gb|EFM87350.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859550|gb|EFM91575.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862049|gb|EFM94025.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864194|gb|EFM96107.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866259|gb|EFM98123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870704|gb|EFN02445.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 419

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 169/424 (39%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 66  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 126 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 186 --------------------------------------FIDEID-KITRKSESPSITRDV 206

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +  P          +D   +       + 
Sbjct: 207 SGEGVQQALLKLIEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 249

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DKI     +   GIG   E     L    E   ++  +  +  + ++   
Sbjct: 250 ICGGAFAG-LDKIVEARSNKQGGIGFGAE-----LKKDKEREDLTELFKQVEPEDLVKF- 302

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L
Sbjct: 303 ----------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVEL 352

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS----DLQEKTVVIDA 416
            FT++++ A+A  +++  +     GAR L++++E +L D  ++      +   K V +  
Sbjct: 353 KFTKEALIAIAQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNVKKVTVGK 407

Query: 417 EYVR 420
             V 
Sbjct: 408 GCVE 411


>gi|260495116|ref|ZP_05815245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
 gi|260197559|gb|EEW95077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_33]
          Length = 424

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/417 (23%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               SI T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------SIGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDTID 413


>gi|303328062|ref|ZP_07358501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861888|gb|EFL84823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. 3_1_syn3]
          Length = 429

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/418 (23%), Positives = 171/418 (40%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGV 64
            SP+EI   LD Y+IGQ +AK+ +++A+ N ++R      L    EL   NILLVGP+G 
Sbjct: 63  LSPQEIKDRLDEYVIGQHEAKKILSVAVHNHYKRVFYADALGHDVELEKSNILLVGPSGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + +  +  
Sbjct: 123 GKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDLEAAGKGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E               +    
Sbjct: 182 ------IDEIDKISRKGDGPSITRDVSGEGVQQALLKIIE-------------GTEANIP 222

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G  +  + F ++                                  +  +I  +   
Sbjct: 223 PKGGRKHPQQEFIRM----------------------------------NTGNILFIVGG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD+   + +R SG  +G   +       PL E                  +  G  
Sbjct: 249 AFVGLDKI--VESRMSGGSMGFGAKVRSSKETPLAE--------LLEKIHPQDLVQFG-- 296

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+  H+  L++ D   ILT+ ++ L+ QY++L + + + L FT 
Sbjct: 297 -------LIPEFVGRIPIITHVDELDEPDLVRILTEPKNALVRQYQKLFELDHVTLRFTP 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++ A+A  A+   +     GAR L+ VME+++ DI F    +   K  +I+   +  
Sbjct: 350 NALKAIAARAIERKT-----GARGLRNVMEKIMLDIMFKLPSMPNVKECLINRAVIEK 402


>gi|313813440|gb|EFS51154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL025PA1]
          Length = 429

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 167/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q            D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE ++ A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALGAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|253579814|ref|ZP_04857082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848813|gb|EES76775.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 438

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 167/416 (40%), Gaps = 81/416 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ  AK+A+++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 66  LKPEEIHAVLDDYVIGQDAAKKALSVAVYNHYKRILASKNSDVELQKSNILMLGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +  ++   +    
Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGII---- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++   S + S      G  
Sbjct: 182 ----------------------------------YIDEID-KITRKSENPSITRDVSGEG 206

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 207 VQQALLKILEGTVASVPPQGGRKHP-----------------HQEFLQIDTTNILFICGG 249

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+ +R     IG   E   ++          +      +     FI  G   
Sbjct: 250 AF-DGIEKIIESRQDTKSIGFGAEVSVKE--------DRNVGEILKDVMPEDFIKFG--- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV V L +L+++    IL + +++L  QY  L + +G+ LDF +D
Sbjct: 298 ------LIPEFIGRVPVVVTLDALDENALISILKEPKNSLTKQYHRLFELDGVELDFEDD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ +A  ++   +     GAR L+ +ME  L D+ +    D   +   I  + V 
Sbjct: 352 ALELVAKKSLERKT-----GARGLRAIMEGSLMDLMYKIPSDDTIRKCTITKDVVD 402


>gi|229496591|ref|ZP_04390305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316488|gb|EEN82407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           endodontalis ATCC 35406]
          Length = 420

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/420 (24%), Positives = 178/420 (42%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67
           P++I + LD+Y++GQ  AK+ +++A+ N ++R  Q+P D   E+   NI++VGPTG GKT
Sbjct: 76  PKDIKAFLDQYVVGQDAAKKYLSVAVYNHYKRVLQVPNDEDIEVEKSNIIMVGPTGTGKT 135

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ +AR+   PF   + T  TE GYVG ++E I+  L+       R + R  V     
Sbjct: 136 LLAQTIARMLDVPFAIADATVLTEAGYVGEDIESILTRLLQSCNYDERAAERGIV----- 190

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               EID ++A  S + S      G  V
Sbjct: 191 ---------------------------------FIDEID-KIARKSDNPSITRDVSGEGV 216

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  L   ++        +                   D   +H ++  ++      
Sbjct: 217 QQGLLKLLEGSIINVPPAGGRKHP-----------------DQKFIHVNTRHILFICAGA 259

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F     KI  R +   IG   EG         E S V  ++   +  H    A G     
Sbjct: 260 FDGIERKIANRLNTRYIGYQEEG---------ERSHVDPQHLLKHVSHQDLRAYG----- 305

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PEI GR P+  +L  L +S  + ILT+ ++ +I QY +L   +GI L FT++++
Sbjct: 306 ----LIPEILGRLPILTYLDPLERSTLKSILTEPKNAIIGQYVKLFAMDGIKLHFTDEAL 361

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDF 426
           D + D      +   ++GAR L++V+E ++ +  ++     +   +++  EY + H  + 
Sbjct: 362 DYIVD-----KTIKEELGARGLRSVVETIMMEAMYTLPGNTDVSELLVTREYAQEHSKEL 416


>gi|294101894|ref|YP_003553752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
 gi|293616874|gb|ADE57028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Aminobacterium colombiense DSM 12261]
          Length = 429

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 174/432 (40%), Gaps = 82/432 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           + L     P E+   LD+Y+IGQ+DAK+ +++A+ N ++R    ++  D  EL   N+LL
Sbjct: 68  VSLKDTPKPAEVKKFLDQYVIGQEDAKKILSVAVYNHFKRISTMSEENDDIELQKSNVLL 127

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++ + 
Sbjct: 128 IGPTGSGKTLLAQSLAKKLNVPFAMADATTLTEAGYVGEDVENILVRLLQAADYDIQAAE 187

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +            +D L   T  S +  + R                         +
Sbjct: 188 RGIIY-----------IDELDKITRKSESASITR-------------------------D 211

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               G     +  L    S V   G +K                     I MDT    +I
Sbjct: 212 VSGEGVQQALLKILEGTLSNVPPKGGRKHP---------------YQDFIQMDT---SNI 253

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +       ++E   I  R +   IG        D+L + E  +          D + F
Sbjct: 254 LFICGGAFAGIEEV--IGRRVNKKMIGFGG-----DILSVKEHRNYELMRQVQPEDLMAF 306

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                         +PE+ GR PV V L+ L+      IL + ++ LI QY++  + EG+
Sbjct: 307 ------------GFIPELIGRLPVVVPLEELDDDALARILVEPKNALIRQYQKTFEIEGV 354

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416
            L F +D+I A+A  A   N+     GAR L+++ME ++ D+ +         + ++I  
Sbjct: 355 KLFFEQDAIKAIAKEARKKNT-----GARGLRSIMEYLMLDLMYEIPSRSNEVEKIIITK 409

Query: 417 EYVRLHIGDFPS 428
           E V         
Sbjct: 410 EVVEKGASPIIK 421


>gi|168335353|ref|ZP_02693448.1| ATP-dependent protease ATP-binding subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 420

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 174/421 (41%), Gaps = 84/421 (19%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPT 62
            N +P+ I  +LD Y+IGQ DAK+A+A+A+ N ++R     D  D  EL   NILL+GPT
Sbjct: 60  TNLTPKMIKEKLDDYVIGQADAKKALAVAVYNHYKRINNVIDKNDGVELQKSNILLLGPT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LA++   PF   + T  TE GYVG +V  I+  LV  A   +        
Sbjct: 120 GSGKTFLAQTLAKMLNVPFAIADATTLTEAGYVGEDVXNILLKLVQAANYDID------- 172

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           R +  I   + I          S TR+V  + ++   +   E           +++    
Sbjct: 173 RAKIGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILE---------GTVASIPPQ 223

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                        +                     + +  D+  ++ 
Sbjct: 224 GG-----------------------RKHP-----------------HQEFLQLDTTNILF 243

Query: 243 NYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             G  F D  DKI+  R     IG     V +    + E                  +  
Sbjct: 244 ICGGAF-DGIDKIIEKRTGEKTIGFGATVVSKKEKSIGE-----------------LLKK 285

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR P  V L++L++   R ILT+ ++ +I QY +L K + + L+
Sbjct: 286 LEPQDLLKFGLIPEFVGRVPAIVTLENLDEEALRRILTEPKNAIIKQYAKLFKFDDVKLE 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYV 419
           FT +++  +A +A++  +     GAR L++++E V+ DI F    + +    V+I    +
Sbjct: 346 FTIEALAKVAKLAIDRQT-----GARGLRSILENVMRDIMFEIPSMSDTLDKVIISEAVI 400

Query: 420 R 420
            
Sbjct: 401 D 401


>gi|315924139|ref|ZP_07920365.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622541|gb|EFV02496.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 431

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 167/424 (39%), Gaps = 81/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ +AK+A+++A+ N ++R        D  E+   NILL+GPTG G
Sbjct: 64  TPKEIKAALDTYVIGQDEAKKALSVAVYNHYKRINAAETDDDDVEIQKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 124 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADMDI----------- 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +++  S + S      G 
Sbjct: 173 --ERAEKGII-------------------------YIDEID-KISRKSENPSITRDVSGE 204

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+      +D               I  +    
Sbjct: 205 GVQQALLKILEGTVANVPPQGGRKHPQQEFIQLDTKD---------------ILFICGGA 249

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              ++E   I  R     IG       R                 +  +    +     H
Sbjct: 250 FDGIEEV--IAKRLEKGSIGFDATIRSR-----------------VEKEDDAMMEKIVPH 290

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   LK L++     ILT+ ++ L+ Q+++L++ E + L F  +
Sbjct: 291 DILKYGLIPEFIGRIPVIATLKHLDEEALINILTEPKNALVKQFQKLLRLEDVDLTFEPE 350

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+ ++ERV+ D+ +      +   + I  + +    G
Sbjct: 351 ALSEIAKKAMATKT-----GARGLRGIIERVMMDLMYEVPSESDISHITITKDMIIDQGG 405

Query: 425 DFPS 428
               
Sbjct: 406 PMIE 409


>gi|221484324|gb|EEE22620.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii GT1]
          Length = 883

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/249 (45%), Positives = 169/249 (67%), Gaps = 3/249 (1%)

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           +S+  SK       +   ++V++   +LM+ E D +I  D V + +++ VE  GIVF+DE
Sbjct: 635 ISDRISKRRSGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDE 694

Query: 252 FDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
            DKI ++   NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  RP
Sbjct: 695 IDKICSKGGRNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRP 754

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
           +DLL E+QGR P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++ 
Sbjct: 755 SDLLAELQGRLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNE 814

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDFPS 428
           +A VA  +N++V +IGARRL T++E+++EDI+F+A  +     V +D E VR  +    +
Sbjct: 815 IARVACEVNASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLT 874

Query: 429 ETDMYHFIL 437
           +TD   F+L
Sbjct: 875 KTDYTRFVL 883



 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + +  P+ +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +   LR+++ PKNILL+GPTG
Sbjct: 310 SHSLCPQAMVEYLNRFIVGQVEAKRAVAVALRQRWRRRHVNERLREDITPKNILLIGPTG 369

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           VGKT ++RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R
Sbjct: 370 VGKTEVARRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMR 429

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
             A   AE +IL+AL+GK      +   R  LR G +  + + ++     S         
Sbjct: 430 PAAEHRAERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPSG-GAASGGS 487

Query: 184 GASVGILNLSELFSKVMGSGRKKKIR 209
               G  + SEL  +     +  +  
Sbjct: 488 FTEEGNRDASELLQQTQTQVKASRKE 513


>gi|220903966|ref|YP_002479278.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868265|gb|ACL48600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 430

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 173/418 (41%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            SP+EI   LD+Y+IGQ +AK+ +++A+ N ++R      L D  EL   NILLVGP+G 
Sbjct: 63  LSPQEIKDRLDQYVIGQHEAKKILSVAVHNHYKRVFYADALGDDVELEKSNILLVGPSGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +          
Sbjct: 123 GKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDL---------- 172

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                A + I+                            EID +++      S      G
Sbjct: 173 ---EAASKGII-------------------------YVDEID-KISRKGDGPSITRDVSG 203

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +         K   +   Q+             I MDT    +I  +   
Sbjct: 204 EGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDT---RNILFIVGG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD+   + +R SG  +G   +      LPL E                  +     
Sbjct: 249 AFVGLDKI--VESRMSGGAMGFGAKVRSSKELPLGE-----------------LLDRIHP 289

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+  H+  L+++D   ILT+ ++ L+ QY++L   E + L FT 
Sbjct: 290 QDLVKFGLIPEFVGRIPIITHVDELDEADLVRILTEPKNALVRQYQKLFGLENVTLRFTP 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++ ++A  A+   +     GAR L+ VMER++ DI F    +   +  +I+   +  
Sbjct: 350 NALKSIASKAIERKT-----GARGLRNVMERIMLDIMFRLPSMPNVRECLINRAVIEK 402


>gi|187478000|ref|YP_786024.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella avium
           197N]
 gi|123515222|sp|Q2L255|CLPX_BORA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115422586|emb|CAJ49111.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella avium
           197N]
          Length = 432

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 168/416 (40%), Gaps = 81/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI S LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPVEIKSFLDQYVIGQTGPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R      
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR------ 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 180 AIIYIDE-IDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++         I   V   +  L +      +  D   +  I       
Sbjct: 227 -----GGRKHPNQDFVQVDTTNILFIVGGAFDGLEK------VIRDRTEKSGIGFSAA-- 273

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + A+       +  E    DL+                             
Sbjct: 274 ---------VRAKSERGVGELFGEAEPEDLIKF--------------------------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    ILT+ ++ LI Q+++L   E   LD   D
Sbjct: 298 -----GLIPELVGRLPVVATLDELDEAALVQILTEPKNALIKQFQKLFAMESAELDIRPD 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E  L D  +        + VV+DA  + 
Sbjct: 353 ALHAIARKALQRKT-----GARGLRSILESALLDTMYDLPTAGNIRRVVVDANVIE 403


>gi|189463686|ref|ZP_03012471.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM
           17393]
 gi|189438636|gb|EDV07621.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM
           17393]
          Length = 399

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 177/426 (41%), Gaps = 80/426 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q       E+   NI++V
Sbjct: 44  LNLRELPKPLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDGGDDVEIEKSNIIMV 103

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 104 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 163

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I          S TR+V  + ++ G +   E  +          + 
Sbjct: 164 GIV-------FIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHP 216

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           D                 + M     K I       +  + +                  
Sbjct: 217 D-----------------QKMIPVNTKNILFICGGAFDGIEK------------------ 241

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                         KI  R + + +G S           V  ++V      I+  ++  +
Sbjct: 242 --------------KIAQRLNTHVVGYSA----------VRNTAV------IDKSNM--M 269

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A    +   L+PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + 
Sbjct: 270 QYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDKVE 329

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F ++  + + D AV        +GAR L++++E ++ D  F      + T V+  +Y 
Sbjct: 330 LKFEDEVFEYIVDKAVEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDTFVVTLDYA 384

Query: 420 RLHIGD 425
           +  +  
Sbjct: 385 KQQLEK 390


>gi|50843045|ref|YP_056272.1| ATP-dependent protease ATP-binding subunit [Propionibacterium acnes
           KPA171202]
 gi|282854722|ref|ZP_06264057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|61211462|sp|Q6A7F1|CLPX_PROAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50840647|gb|AAT83314.1| ATP dependent Clp protease ATP binding subunit [Propionibacterium
           acnes KPA171202]
 gi|282582304|gb|EFB87686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes J139]
 gi|314923823|gb|EFS87654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL001PA1]
 gi|314966163|gb|EFT10262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL082PA2]
 gi|314982028|gb|EFT26121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA3]
 gi|315090842|gb|EFT62818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL110PA4]
 gi|315095054|gb|EFT67030.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL060PA1]
 gi|315104286|gb|EFT76262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA2]
 gi|315106806|gb|EFT78782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL030PA1]
 gi|327328167|gb|EGE69936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL103PA1]
          Length = 429

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 168/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE ++ A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALGAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|89900347|ref|YP_522818.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
 gi|122479496|sp|Q21Y66|CLPX_RHOFD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89345084|gb|ABD69287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodoferax
           ferrireducens T118]
          Length = 421

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 171/419 (40%), Gaps = 82/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRTLAVAVYNHYKRLRHQEKAKKDDVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I+  L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCNYEVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D V  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFVQVDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +G+G          +   E  S++  +  +  + ++       
Sbjct: 251 GGAFSGLEKVIDNRTQSSGMGFG------ATVKSKEQRSLTEVFKEVEPEDLIKF----- 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 300 ------GLIPELVGRMPVLATLAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            ++ A+A  A+   +     GAR L++++E+ L D  F   +      VV+D   +  +
Sbjct: 354 SALKAIAKKALARKT-----GARGLRSILEQSLIDTMFDLPNTSNVDKVVVDESTIDEN 407


>gi|228909653|ref|ZP_04073476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|228980435|ref|ZP_04140745.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|229025269|ref|ZP_04181689.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|229123342|ref|ZP_04252546.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228660118|gb|EEL15754.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228736022|gb|EEL86597.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|228779255|gb|EEM27512.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|228849942|gb|EEM94773.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|326941597|gb|AEA17493.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 218

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
           +  +E+ RLIDMD V ++++   E  GI+F+DE DKI  + S N + VSREGVQRD+LP+
Sbjct: 1   MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L  L+  DF  IL
Sbjct: 60  VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N    +IGARRL T+ME++LE
Sbjct: 120 IEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           D+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218


>gi|331005197|ref|ZP_08328591.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC1989]
 gi|330420979|gb|EGG95251.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC1989]
          Length = 433

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 172/418 (41%), Gaps = 83/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----DLRDELMPKNILLVGPT 62
           +P+EI   LD+Y+IGQ  AKR +++A+ N ++R +            EL   NIL+VGPT
Sbjct: 70  TPKEITEILDQYVIGQFRAKRVLSVAVYNHYKRLRFGDTAGKDKDTVELGKSNILMVGPT 129

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V
Sbjct: 130 GSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIV 189

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  VA            
Sbjct: 190 Y-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG----- 235

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+                  V   +I  V 
Sbjct: 236 -------------------------RKHPQQEFL---------------QVDTSNILFVC 255

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I  R    GIG +     ++    V  +    +           +A G
Sbjct: 256 GGAFAGLDKV--IRDRSEKGGIGFNAVVKNKEESKGVGEALKELE-------SEDLVAYG 306

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P+   L+ L++     ILT+ +++L  QY +L + EG+ +DF
Sbjct: 307 ---------LIPEFVGRLPMIATLEELDEQALIQILTEPKNSLTKQYTKLFEMEGVEIDF 357

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ED++ A+A  A+   +     GAR L+++ME VL D  +     +  + VV+D   +
Sbjct: 358 REDALKAVATKAMVRKT-----GARGLRSIMEAVLLDTMYRIPSEENVQKVVVDEGVI 410


>gi|325280714|ref|YP_004253256.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter
           splanchnicus DSM 20712]
 gi|324312523|gb|ADY33076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter
           splanchnicus DSM 20712]
          Length = 404

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 182/437 (41%), Gaps = 88/437 (20%)

Query: 2   KLTFNF------SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPK 54
           K T N        P EI + LD+Y+IGQ +AK+ +A+A+ N ++R    A   + E+   
Sbjct: 45  KSTLNLEHIEVKKPIEIKAFLDQYVIGQDEAKKHLAVAVYNHYKRLLHKAGNDEVEIEKS 104

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NI++VG TG GKT ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  A   V
Sbjct: 105 NIVMVGRTGTGKTLLARTIAKMLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYDV 164

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
             +      E+  +  +E  LD +       S TR+V  + ++ G +   E  I      
Sbjct: 165 EAA------EKGIVFIDE--LDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQ 216

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               + D                 + M     K I       +  + +            
Sbjct: 217 GGRKHPD-----------------QKMIPVNTKNILFICGGAFDGIEK------------ 247

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
                               KI AR +                 +V G + S     I+ 
Sbjct: 248 --------------------KIAARMNT----------------MVVGFNASQNTEKIDR 271

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           ++  F+   A    +   L+PEI GR PV  +L+ L+++  R ILT+ ++ +I QY +L 
Sbjct: 272 EN--FLQYIAPQDLKSFGLIPEIIGRLPVLTYLEPLDRAALRNILTEPKNAIIRQYIKLF 329

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           + +GI L F ED  + + D A+        +GAR L+++ E ++ D+ F      +K + 
Sbjct: 330 ELDGITLKFDEDVYEYIVDKAIEFR-----LGARGLRSICEAIMTDLMFEVPSQGKKNIT 384

Query: 414 IDAEYVRLHIGDFPSET 430
           I   Y    +    ++ 
Sbjct: 385 ITKAYAEEKMNRVNAQK 401


>gi|254785726|ref|YP_003073155.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter
           turnerae T7901]
 gi|259491270|sp|C5BTX7|CLPX_TERTT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237687270|gb|ACR14534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Teredinibacter turnerae T7901]
          Length = 429

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 166/405 (40%), Gaps = 81/405 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTGV 64
           P +I + LD Y+IGQQDAK+ +A+A+ N ++R ++          EL   NILLVGPTG 
Sbjct: 69  PIDISATLDEYVIGQQDAKKVLAVAVYNHYKRLRVGDKKKGKDEVELGKSNILLVGPTGS 128

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V  
Sbjct: 129 GKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVY- 187

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +  K I+  +A              
Sbjct: 188 ------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG------- 232

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+                  V   +I  +   
Sbjct: 233 -----------------------RKHPQQEFL---------------QVDTSNILFICGG 254

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LD+   I  R    GIG S E              V +K GS N    L       
Sbjct: 255 AFAGLDKI--IRDRSEKGGIGFSAE--------------VKSKDGSKNVGETLKDLE--P 296

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L+K     IL + +++L+ QY +L + E + +DF  
Sbjct: 297 EDLVRYGLIPEFVGRLPVIATLDELDKEALVTILREPKNSLVKQYAKLFEMENVEVDFRA 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           D+++A+A+ A+   +     GAR L+++ME VL D  +     + 
Sbjct: 357 DALEAVAEKAMVRKT-----GARGLRSIMENVLLDTMYKLPSEEN 396


>gi|332296031|ref|YP_004437954.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Thermodesulfobium narugense DSM 14796]
 gi|332179134|gb|AEE14823.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Thermodesulfobium narugense DSM 14796]
          Length = 413

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 181/420 (43%), Gaps = 75/420 (17%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGV 64
           N  P+EI ++L  Y+IGQ++ K+ +++A+ N ++R        D E++  N+LL+GPTG 
Sbjct: 61  NLKPKEIFAKLSEYVIGQENVKKVLSVAVYNHYKRIMQDKSDNDVEILKSNVLLIGPTGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   +  + +  V  
Sbjct: 121 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENVLLRLIQAANYDIHAAEKGIVY- 179

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I         TS TR+V  + ++   +   E                    
Sbjct: 180 ------IDEIDKIGRKSENTSITRDVSGEGVQQALLKILE-------------------- 213

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K  +                       ++ ++I  +   
Sbjct: 214 ---------GTIANVPPQGGRKHPQQEFI------------------QINTENILFICGG 246

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               ++E  K+ +R     IG   +      +   E      +   +  D I F      
Sbjct: 247 SFEKIEE--KVYSRIGKKNIGFISKSKIDREIKEEEEKWKILQENILPEDLIHF------ 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR P+   L  L++   + ILT+ ++ ++ QYK+L++ + I L+FTE
Sbjct: 299 ------GLIPELVGRLPIIAVLSPLDEVLLKKILTEPKNAILKQYKKLLEMDNITLNFTE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHI 423
           +S+D +   A+  N+     GAR L+ +ME ++ D+ F  A   Q  T+ ID ++V   +
Sbjct: 353 ESLDYIVKEAIKRNT-----GARGLRAIMETIMLDVMFDTALFAQNGTLEIDGKFVEEKL 407


>gi|148269914|ref|YP_001244374.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170288599|ref|YP_001738837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281412205|ref|YP_003346284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
 gi|147735458|gb|ABQ46798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170176102|gb|ACB09154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281373308|gb|ADA66870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
          Length = 406

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 172/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A   +  ++   +    
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAANFDIERAQYGII---- 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 173 ----------------------------------YIDEID-KIAKKSPNPSITRDVSGEG 197

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+                  V   +I  +     
Sbjct: 198 VQQALLKILEGTIANVPPQGGRKHPYQEFIK---------------VDTRNILFIAGGAF 242

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+E   I  R     +G   E   +  + L E           +      +  G    
Sbjct: 243 DGLEEI--IKRRIQSTTMGFGAEIKSKKEMRLGE--------ILKHVTPDDLVQYG---- 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T+++
Sbjct: 289 -----LIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEA 343

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +  +A  A+   +     GAR L+ V E ++ D+ F   +L+  + VVI  E        
Sbjct: 344 LRIIAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVALGKEKP 398

Query: 426 FP 427
             
Sbjct: 399 IV 400


>gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 426

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 169/425 (39%), Gaps = 93/425 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKN 55
            PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q                   E+   N
Sbjct: 63  KPREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLADGGHHDDVEIAKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 123 ILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 182

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           ++ +  +         + I          S TR+V  + ++   +   E  +        
Sbjct: 183 KAEQGIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 235

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                                                        ++          +  
Sbjct: 236 ----------------------------------------RKHPHQEFI-------QIDT 248

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  +       L+E   I +R    GIG           PL E S     YG +  + 
Sbjct: 249 TNVLFIVAGAFAGLEEI--IGSRSGRKGIGFGA--------PLNEASKKVDSYGEVMPED 298

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L              L+PE  GR PV   + +L++     IL+  ++ L+ QY+++ + 
Sbjct: 299 LLKF-----------GLIPEFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQI 347

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVI 414
           +G+ L F E +++A+AD A+   +     GAR L+ +ME VL  + F     ++  +VVI
Sbjct: 348 DGVELVFDETALNAIADQALERGT-----GARGLRAIMEEVLLPVMFDLPSREDVASVVI 402

Query: 415 DAEYV 419
             + V
Sbjct: 403 TEDVV 407


>gi|15642920|ref|NP_227961.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           maritima MSB8]
 gi|8134367|sp|Q9WXZ3|CLPX_THEMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4980639|gb|AAD35239.1|AE001700_3 ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga
           maritima MSB8]
          Length = 406

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 172/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A   V  ++   +    
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAANFDVERAQYGII---- 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 173 ----------------------------------YIDEID-KIAKKSPNPSITRDVSGEG 197

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+                  V   +I  +     
Sbjct: 198 VQQALLKILEGTIANVPPQGGRKHPYQEFIK---------------VDTRNILFIAGGAF 242

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+E   I  R     +G   E   +  + L E           +      +  G    
Sbjct: 243 DGLEEI--IKRRIQSTTMGFGAEIKSKKEMRLGE--------ILKHVTPDDLVQYG---- 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T+++
Sbjct: 289 -----LIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEA 343

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +  +A  A+   +     GAR L+ V E ++ D+ F   +L+  + VVI  E        
Sbjct: 344 LRIIARKALKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVALGKEKP 398

Query: 426 FP 427
             
Sbjct: 399 IV 400


>gi|308177633|ref|YP_003917039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
 gi|307745096|emb|CBT76068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter
           arilaitensis Re117]
          Length = 430

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/429 (23%), Positives = 170/429 (39%), Gaps = 94/429 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-------------LRDELMPK 54
            PREI   L  Y+IGQ++AKRA+++A+ N ++R     D                E+   
Sbjct: 63  KPREIFDSLQEYVIGQENAKRALSVAVYNHYKRIHGNQDHGPVAALTNEDPLDDVEVSKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NI+L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 123 NIMLIGPTGCGKTYLAQSLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAADYDV 182

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           +++    +         + I          S TR+V  + ++   +   E  +       
Sbjct: 183 KKAETGIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQG 235

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                                             +   Q              I +DT  
Sbjct: 236 G--------------------------------RKHPHQD------------FIQLDT-- 249

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  +       L+E   I +R    GIG           PL    S +  Y  +  +
Sbjct: 250 -TNILFIVAGAFAGLEEI--ISSRAGQKGIGFGA--------PLTALKSATASYSDVRPE 298

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
            +L              L+PE  GR PV   ++ L+K     +LT+ ++ L+ QY+++ +
Sbjct: 299 DLLKF-----------GLIPEFIGRLPVITTVEHLDKDALVRVLTEPKNALLKQYQKMFQ 347

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            +G+ L F + +++A+A++A+   +     GAR L++++E  L  + F      +   VV
Sbjct: 348 MDGVALSFDQSALEAIAELAIARET-----GARGLRSILEETLGGVMFDLPSRDDVAEVV 402

Query: 414 IDAEYVRLH 422
           I    V   
Sbjct: 403 ITRATVIDR 411


>gi|170692396|ref|ZP_02883559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
 gi|170142826|gb|EDT10991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           graminis C4D1M]
          Length = 423

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 177/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|296328559|ref|ZP_06871078.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154368|gb|EFG95167.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 423

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               ++ T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------NMGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  E + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITITKETID 413


>gi|310657901|ref|YP_003935622.1| clpx-clpp ATP-dependent serine protease ATPase and specificity
           subunit [Clostridium sticklandii DSM 519]
 gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Clostridium sticklandii]
          Length = 421

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 175/424 (41%), Gaps = 83/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVG 65
            P+EI   LD Y+IGQ DAK+ +A+A+ N ++R           EL   NIL++GPTG G
Sbjct: 62  KPKEIKDYLDEYVIGQDDAKKTLAVAVYNHYKRIYAVDGKAKDIELQKSNILMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + +         
Sbjct: 122 KTLLAQTLAKMLNVPFAMADATALTEAGYVGEDVENILLKLIQASDYDISK--------- 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID     + +     D+ G  
Sbjct: 173 ----AEKGII-------------------------YIDEIDKITRKSENPSITRDVSGEG 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                    +   ++      K  +  Q       ++          +   +I  +    
Sbjct: 204 ---------VQQALLKIIEGTKANVPPQGGRKHPHQEFL-------QIDTTNILFIVGGA 247

Query: 246 IVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               D  DKI+ R  G    G   + V ++ + + E       Y  + T+ +L       
Sbjct: 248 F---DGIDKIIQRRMGEKALGFGAKIVSKNDIAVGEI------YKQVQTEDLL------- 291

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV V L  L++     IL + ++ L+ Q+K+L + + +ILD  +
Sbjct: 292 ----RFGLIPEFIGRVPVVVSLDPLDEKALISILKEPKNALVKQFKKLFEMDKVILDIED 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++  +A  A+   +     GAR L++++E+V+ DI +      + + VVI  E +  + 
Sbjct: 348 EALVEVAKKAIAKKT-----GARGLRSILEKVMMDIMYEVPSRDDIEKVVITKESITDNK 402

Query: 424 GDFP 427
             + 
Sbjct: 403 QPYV 406


>gi|257869243|ref|ZP_05648896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           gallinarum EG2]
 gi|257803407|gb|EEV32229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           gallinarum EG2]
          Length = 417

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 166/422 (39%), Gaps = 82/422 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           + T    P+E++  L+ Y+IGQ  AK+ +A+A+ N ++R  +     D EL   NI L+G
Sbjct: 60  EFTEVPKPQELLHILNDYVIGQDRAKKTLAVAVYNHYKRVNVEPTAEDVELQKSNICLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V      
Sbjct: 120 PTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAADYNV------ 173

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                    AE+ I+                            EID ++A  S ++S   
Sbjct: 174 -------EMAEKGII-------------------------YIDEID-KIARKSENVSITR 200

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L         +   +   Q+               M  +   +I  
Sbjct: 201 DVSGEGVQQALLKILEGTQASVPPQGGRKHPHQE---------------MIQIDTTNILF 245

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +        D  D IV    G        G         E          I  D + F  
Sbjct: 246 IVGGAF---DGIDTIVKNRMGEKT--IGFGTNNKRFSEDESIMQHI----IPEDLLKF-- 294

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L
Sbjct: 295 ----------GLIPEFIGRLPVMAALDKLTTDDLVRILTEPKNALVKQYQKLLALDDTEL 344

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +F   ++ A+AD A+  N+     GAR L++++E ++ D+ F+   D   + V+I  +  
Sbjct: 345 EFEPAALRAIADKAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIEKVIITEDAA 399

Query: 420 RL 421
           + 
Sbjct: 400 KE 401


>gi|195952527|ref|YP_002120817.1| ATP-dependent protease ATP-binding subunit ClpX [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254763851|sp|B4U6S1|CLPX_HYDS0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|195932139|gb|ACG56839.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 399

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/411 (25%), Positives = 171/411 (41%), Gaps = 82/411 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI   LD +IIGQ +AK+ +++A+ N ++R    +D   E    NILL+GPTG GKT
Sbjct: 59  KPKEIKKILDEFIIGQDEAKKILSVAVYNHYKRILRKSDTDIE--KSNILLIGPTGSGKT 116

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE ++  L+      +             
Sbjct: 117 LLAKTLAKILNVPFAIADATTLTEAGYVGEDVENVLVRLLQNCDYNI------------- 163

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                    +K + G I   EID     +  + S      G  V
Sbjct: 164 -------------------------EKAKKGIIYIDEIDKIAKKSGHNPSITRDVSGEGV 198

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  +   +     +   +                     + +  D+  ++   G  
Sbjct: 199 QQALLKIIEGTIANVPPQGGRKHP-----------------HQEFIQLDTTNILFICGGA 241

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F+   D I  R   + +G   E  +       EG+ +S     +  D ++          
Sbjct: 242 FVGLEDIIKRRLGKSTVGFETEISKYKE----EGNILS----QVEPDDLINF-------- 285

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV   L  L + D   ILT+ ++ +I QYKEL++ EGI L+FTE ++
Sbjct: 286 ---GLIPEFVGRLPVISVLNELTEEDLIRILTEPKNAVIKQYKELLRMEGIGLEFTEGAL 342

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
             +A  A+   +     GAR L+ ++E+++ DI + A  L   + +VID  
Sbjct: 343 REIAKEAIKRKT-----GARGLRAIVEKIMTDIMYEAPSLVNVEKIVIDEN 388


>gi|332830358|gb|EGK02986.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 411

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 174/417 (41%), Gaps = 79/417 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I   LD YIIGQ +AKR +A+A+ N ++R     +   E+   NI+LVGPTG GKT 
Sbjct: 64  PKKIKEYLDGYIIGQDNAKRYLAVAVYNHYKRILQEKNDDIEIEKSNIILVGPTGTGKTL 123

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  +   V  + R  V      
Sbjct: 124 LARTIAKMLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDVASAERGIV------ 177

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                                              EID ++A  S + S      G  V 
Sbjct: 178 --------------------------------FIDEID-KIARKSDNPSITRDVSGEGVQ 204

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  L   ++    +   +                   D   +  D+  ++   G  F
Sbjct: 205 QGLLKLLEGSIVNVPPQGGRKHP-----------------DQKMIAVDTKNILFICGGAF 247

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                KI  R +   +G +                 S K   ++ +++L     A    +
Sbjct: 248 DGIERKIAQRLNTKVVGYAS----------------SLKNAEVDRENLL--QYVAPQDLK 289

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PEI GR P+  +L +L++S  R ILT+ ++++I QY +L   + + L F ED  +
Sbjct: 290 SYGLIPEIIGRLPILTYLDALDRSALRRILTEPKNSIIKQYIKLFNMDDVDLTFDEDVYE 349

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            + D AV        +GAR L++++E ++ D  F+    ++  + I  +Y    +  
Sbjct: 350 FIVDKAVEYK-----LGARGLRSIVENIMMDAMFTIPSTKQTQLHITKDYAGEQLEK 401


>gi|225455378|ref|XP_002272792.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 583

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 180/439 (41%), Gaps = 92/439 (20%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------- 45
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R    +                
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218

Query: 46  --DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
             +   EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+
Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 278

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             L+ VA   V  +++  V                                         
Sbjct: 279 YKLLMVADYNVAAAQQGIV--------------------------------------YID 300

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E+D ++   +  ++      G  V    L  L   V+    K   +           +D 
Sbjct: 301 EVD-KITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKD- 358

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
                           ++   G  F+D    I  R   + IG       R  +     + 
Sbjct: 359 ----------------ILFICGGAFIDLEKTISERRQDSSIGFGAP--VRANMRTGGPTD 400

Query: 284 VSTKYGSINT-DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            +     + T +    I+ G         L+PE  GRFP+ V L +L ++    +LT+ +
Sbjct: 401 AAVASSLLETVESSDLISYG---------LIPEFVGRFPILVSLSALTENQLVEVLTEPK 451

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QYK++ +  G+ L FT++++  ++  A++ N+     GAR L++++E +L +  +
Sbjct: 452 NALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNT-----GARGLRSILENILMNAMY 506

Query: 403 SASDLQEKTVVIDAEYVRL 421
              D++    +IDA  V  
Sbjct: 507 EIPDVRTGNDIIDAVVVDD 525


>gi|183220374|ref|YP_001838370.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910488|ref|YP_001962043.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|238687813|sp|B0SMF0|CLPX_LEPBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687840|sp|B0SEC2|CLPX_LEPBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167775164|gb|ABZ93465.1| ATPase subunit of endopeptidase Clp [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778796|gb|ABZ97094.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 426

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 170/422 (40%), Gaps = 77/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
            P EI   LD+Y+IGQ+ AK+A+A+A+ N ++R           EL   NI+L+GPTG G
Sbjct: 68  KPTEIKKILDQYVIGQEQAKKALAVAVYNHYKRIFHNERKAGDVELEKSNIMLIGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N V+ +    +   
Sbjct: 128 KTLLAQTLARILKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDVKRAEMGIIY-- 185

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        + S TR+V  + ++   +    I+  VA+              
Sbjct: 186 -----IDEIDKISRKSDSASITRDVSGEGVQQALLKI--IEGTVANVPPQGG-------- 230

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                   +    + +  ++  ++   G
Sbjct: 231 ---------------------------------------RKHPHQEYIPVETKNILFICG 251

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F+   D I  R     IG     V  D    +E       +   + D + F       
Sbjct: 252 GAFVGLTDIIKQRVGVKSIGFHSNEVVNDRGRKIEEGESLVHHVIPD-DLMKF------- 303

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L     + I T+ +++L+ QY+++   E + L FTE 
Sbjct: 304 -----GLIPEFIGRLPIIATLDELTIESLKSIFTEPKNSLLKQYQKMFDIENVKLKFTES 358

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIG 424
           +I+A+A  A+   S     GAR L+ ++E ++ ++ F     ++   VV+  + V     
Sbjct: 359 AIEAIAQTAIKRES-----GARGLRAIVEEIMMELMFQIPSRKDVLEVVVTDDTVLKKEA 413

Query: 425 DF 426
             
Sbjct: 414 PI 415


>gi|256028616|ref|ZP_05442450.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           D11]
 gi|289766534|ref|ZP_06525912.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
 gi|289718089|gb|EFD82101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           sp. D11]
          Length = 424

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               S+ T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------SMGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDTID 413


>gi|316967042|gb|EFV51535.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Trichinella spiralis]
          Length = 580

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 172/469 (36%), Gaps = 111/469 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----------QLPADLRDELMP---- 53
           P+EI + LD++++GQ+ AK+ +++A+ N ++R                D    + P    
Sbjct: 164 PKEIYNYLDKFVVGQEQAKKVLSVAVYNHYKRVYLCPRPVPGSKNDNGDSSRPVTPMMTT 223

Query: 54  ----------------------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
                                  NILL+GPTG GKT +++ +A+    PF   + T  T+
Sbjct: 224 KGKCLFVHGFGCVVYPELRLEKSNILLLGPTGCGKTLLAQTVAQCLDVPFAICDCTTLTQ 283

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE +I  L+  A   V +++   V            LD               
Sbjct: 284 AGYVGEDVESVISRLLQDANYNVEKAQMGIV-----------FLD--------------- 317

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
                         +++       I      GG  V    L  L   V+   +    +M 
Sbjct: 318 --------------EVDKIGAVPGIHQLRDVGGEGVQQALLKMLEGSVVNVPQHGSRKMR 363

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
            +                   V   ++  V +     LD+   +  R     +G      
Sbjct: 364 GENI----------------QVDTTNVLFVASGAFNGLDKI--VGRRKHSKYLGFGAITN 405

Query: 272 QRDLLPLVEG-SSVSTKYGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVH 325
                      + V++   + N D  L             DL+     PE  GR PV V 
Sbjct: 406 DDSPGRRAAALADVASLDSTANPDLELAEKDALLREVEAHDLIEFGMIPEFVGRLPVLVQ 465

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
             SL+++    ILT+ +++LI QYK L   + I L FT+D+++A+A +A+   +     G
Sbjct: 466 FHSLDQNLLVRILTEPQNSLIAQYKALFTMDQIDLHFTDDALNAIARLALQKKT-----G 520

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
           AR L+ ++E +L D  F        +V + A+ V           D+  
Sbjct: 521 ARGLRAIVESILLDPMFECPGTDVSSVTVTADAVNK-----IKPVDLVR 564


>gi|144899461|emb|CAM76325.1| ClpX, ATPase regulatory subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 421

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/406 (24%), Positives = 156/406 (38%), Gaps = 89/406 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I + LD Y+IGQ  AK+ +++A+ N ++R Q      + E+   NILL+GPTG GK
Sbjct: 65  TPKDIRAVLDDYVIGQDHAKKVLSVAVHNHYKRLQHGGKAGEVEIAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I  R   N IG   E    D                                
Sbjct: 251 AGLEKV--IGTRGKNNSIGFGAEVRGPDERR----------------------TGQILRE 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L  L+      IL+  ++ L+ QY+ L + E   L 
Sbjct: 287 VEPEDLLKFGLIPEFVGRLPVLATLDDLDVGALVEILSKPKNALVKQYQRLFEMEDTRLS 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           F ED++ ++A+ A+   +     GAR L+++ME +L D  F    +
Sbjct: 347 FKEDALVSIAEKAIARKT-----GARGLRSIMESILLDTMFELPGM 387


>gi|300865841|ref|ZP_07110587.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
 gi|300336165|emb|CBN55745.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria
           sp. PCC 6506]
          Length = 460

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 174/425 (40%), Gaps = 79/425 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILL 58
             P EI   LD ++IGQ  AK+ +++A+ N ++R  +          D   EL   NILL
Sbjct: 88  LKPVEIKQHLDNHVIGQHSAKKVLSVAVYNHYKRLSVDRDKATKPTPDDAVELQKSNILL 147

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VGPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V  ++
Sbjct: 148 VGPTGCGKTLLAQSLAQMLDVPFAVADATTLTEAGYVGDDVENILLRLLQVADFDVETAQ 207

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I         TS TR+V  + ++   +   E           + N
Sbjct: 208 RGIIY-------IDEIDKIARKSENTSITRDVSGEGVQQALLKILE---------GTVVN 251

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG      +  +L           KI       +  L +    RL       + S+
Sbjct: 252 VPPQGGRKHPYQDFIQL--------DTSKILFICGGAFVGLEKIVEQRL------GKKSL 297

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             ++                          EG+   +    + ++   ++   + D + F
Sbjct: 298 GFIQPQ----------------------EAEGIANGIPAKDKRAADILQHAQPD-DLVKF 334

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   +  L+++    ILT+ ++ L+ QY++L+K + +
Sbjct: 335 ------------GLIPEFVGRMPVVTVISPLDEAALMEILTEPKNALVKQYQKLLKMDNV 382

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L+F  D++ A+A  A    +     GAR L++++E ++ D+ +     ++     I  E
Sbjct: 383 QLEFQGDALKAIAQEAYRRKT-----GARALRSILEELMLDVMYELPSRKDVARCTITKE 437

Query: 418 YVRLH 422
            V   
Sbjct: 438 MVEKR 442


>gi|296121985|ref|YP_003629763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
 gi|296014325|gb|ADG67564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces
           limnophilus DSM 3776]
          Length = 427

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/416 (24%), Positives = 168/416 (40%), Gaps = 81/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI + LD Y+IGQ   KR +++A+ N ++R    AD  +  E+   NILL+GPTG G
Sbjct: 76  TPREITTHLDEYVIGQDRTKRLLSVAVYNHYKRLTAAADADNDIEIEKSNILLIGPTGSG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF   + T  TE GYVG +VE ++  L+  A   +  ++R  V   
Sbjct: 136 KTLLAKTLARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDIEAAQRGIV--- 192

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  TS ++S      G 
Sbjct: 193 -----------------------------------FIDEID-KIGKTSQNVSITRDVSGE 216

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +            ++    ID   +       +   G
Sbjct: 217 GVQQALLKMLEGTVANVPPQGGRKHP----------EQQYIQIDTSNI-------LFICG 259

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F+   D I  R     IG     V                     T     +A     
Sbjct: 260 GTFVGLEDIIAKRLGKKTIGFGGSSVDDQ-----------------KTRSGKLLAHACTD 302

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE+ GR PV   L  L++ D   IL++ +++L+ QY++  + E   L+ T +
Sbjct: 303 DVIEFGMIPELVGRLPVVSALSPLDEQDLVRILSEPKNSLVKQYQKFFQMENAELEVTSE 362

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           ++  +A +A        D GAR L++V+E  + ++ +   D++  K  V+  E VR
Sbjct: 363 ALLEIARIA-----KAKDTGARGLRSVVEESMFEVMYELPDMEAGKKYVLTPEVVR 413


>gi|329889320|ref|ZP_08267663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           diminuta ATCC 11568]
 gi|328844621|gb|EGF94185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas
           diminuta ATCC 11568]
          Length = 422

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/404 (25%), Positives = 160/404 (39%), Gaps = 89/404 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S + S      G  
Sbjct: 181 ----------------------------------YIDEID-KISRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFL---------------QVDTANILFIVGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR  G  IG                     K   I+      I       
Sbjct: 251 AGLEKV--ISARGEGASIGFGA------------------KVKEIDERRTGEI----LKQ 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR PV   L+ L++     ILT+ ++ L+ QYK L + E + L 
Sbjct: 287 VEPDDLMRFGLIPEFIGRLPVLATLEDLDEVALIKILTEPKNALVKQYKRLFEMENVTLT 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           FT+D++ A+A  A+   +     GAR L++++E VL +  F   
Sbjct: 347 FTDDALSAVAKKAITRKT-----GARGLRSILEGVLLETMFELP 385


>gi|323127108|gb|ADX24405.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 409

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 170/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++
Sbjct: 58  LTEVPKPKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L F +++++A+A+ A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LAFDKEALEAIANKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|251782259|ref|YP_002996561.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390888|dbj|BAH81347.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 409

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 170/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++
Sbjct: 58  LTEVPKPKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L F +++++A+A+ A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LAFDKEALEAIANKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|237743261|ref|ZP_04573742.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
 gi|229433040|gb|EEO43252.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1]
          Length = 424

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               S+ T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------SMGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDTID 413


>gi|19705311|ref|NP_602806.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|23813864|sp|Q8RHJ9|CLPX_FUSNN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|19713280|gb|AAL94105.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 423

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               ++ T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------NMGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITITKDTID 413


>gi|116513869|ref|YP_812775.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093184|gb|ABJ58337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 417

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 181/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI + A    +   V+I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRAPSESDISKVIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVADD 416


>gi|69246840|ref|ZP_00604149.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO]
 gi|257878469|ref|ZP_05658122.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,230,933]
 gi|257882891|ref|ZP_05662544.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,502]
 gi|257889331|ref|ZP_05668984.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,410]
 gi|257894344|ref|ZP_05673997.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,408]
 gi|258616006|ref|ZP_05713776.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus
           faecium DO]
 gi|260560058|ref|ZP_05832236.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium C68]
 gi|261207453|ref|ZP_05922139.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium TC 6]
 gi|289565864|ref|ZP_06446305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium D344SRF]
 gi|293559815|ref|ZP_06676333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1162]
 gi|294623406|ref|ZP_06702262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium U0317]
 gi|314939702|ref|ZP_07846926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a04]
 gi|314942230|ref|ZP_07849082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133C]
 gi|314948863|ref|ZP_07852233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0082]
 gi|314950805|ref|ZP_07853877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133A]
 gi|314993230|ref|ZP_07858609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133B]
 gi|314995227|ref|ZP_07860340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a01]
 gi|68195073|gb|EAN09535.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO]
 gi|257812697|gb|EEV41455.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,230,933]
 gi|257818549|gb|EEV45877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,502]
 gi|257825691|gb|EEV52317.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,410]
 gi|257830723|gb|EEV57330.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,408]
 gi|260073893|gb|EEW62217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium C68]
 gi|260078344|gb|EEW66049.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium TC 6]
 gi|289162324|gb|EFD10183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium D344SRF]
 gi|291597172|gb|EFF28367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium U0317]
 gi|291606234|gb|EFF35650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1162]
 gi|313590557|gb|EFR69402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a01]
 gi|313592285|gb|EFR71130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133B]
 gi|313597020|gb|EFR75865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133A]
 gi|313599002|gb|EFR77847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133C]
 gi|313641037|gb|EFS05617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0133a04]
 gi|313644736|gb|EFS09316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium TX0082]
          Length = 416

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 84/420 (20%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILL 58
           + T    P EI+  L+ Y+IGQ  AKR++A+A+ N ++R    A       EL   NI L
Sbjct: 57  EFTEVPKPLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V    
Sbjct: 117 IGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNV---- 172

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                      AE+ I+                            EID ++A  S ++S 
Sbjct: 173 ---------ELAEKGII-------------------------YIDEID-KIARKSENVSI 197

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   V     +   +                     + +  D+ 
Sbjct: 198 TRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTT 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F D  + IV    G        G Q   L   E    S     I  D + F
Sbjct: 241 NILFIVGGAF-DGIETIVKNRMGEKT--IGFGTQNQKLSEDE----SVMQHIIPEDLLKF 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +  
Sbjct: 294 ------------GLIPEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNT 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAE 417
            L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ F     +  + V+I  E
Sbjct: 342 ELEFEPEALRAIAKKAIERNT-----GARGLRSIIEEIMMDVMFDIPSNENIEKVIITKE 396


>gi|269955921|ref|YP_003325710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304602|gb|ACZ30152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 426

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 174/434 (40%), Gaps = 98/434 (22%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNI 56
           LT    PREI   L++YIIGQ  AKRA+A+A+ N ++R Q             E+   NI
Sbjct: 58  LTELPKPREIFEFLEQYIIGQDAAKRALAVAVYNHYKRIQASEQRPGGDADAIEISKSNI 117

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V++
Sbjct: 118 LLIGPTGTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKK 177

Query: 117 SR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +       DEV + A                  S TR+V  + ++   +   E       
Sbjct: 178 AETGIIYIDEVDKVARKA------------DNPSITRDVSGEGVQQALLKIIEGT---TA 222

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +         P    + I   + LF               V   +  L    + R     
Sbjct: 223 SVPPQGGRKHPHQEFIQIDTTNVLF--------------IVAGAFAGLEEIVAAR----- 263

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
                                    AR  G G G   E V  D L          KYG I
Sbjct: 264 -------------------------ARKRGIGFGAPMETVVDDDLFAEVRPEDLQKYGLI 298

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                                 PE  GR PV   +  L++     ILT+  + L+ QY+ 
Sbjct: 299 ----------------------PEFIGRLPVIASVSPLDRDALVRILTEPRNALVKQYQR 336

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-K 410
           + + +G+ L+F++D+++A+AD A+   +     GAR L+ +ME VL+ + F      + +
Sbjct: 337 MFQIDGVELEFSDDAVEAIADQALLRGT-----GARGLRAIMEEVLQQVMFDVPSRDDVE 391

Query: 411 TVVIDAEYVRLHIG 424
            VVI  E V  ++ 
Sbjct: 392 KVVISREAVLENVN 405


>gi|192361200|ref|YP_001982471.1| ATP-dependent protease ATP-binding subunit ClpX [Cellvibrio
           japonicus Ueda107]
 gi|238692439|sp|B3PHK5|CLPX_CELJU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|190687365|gb|ACE85043.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellvibrio
           japonicus Ueda107]
          Length = 433

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 165/411 (40%), Gaps = 92/411 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----RDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R +            EL   NILLVGPT
Sbjct: 69  KPHEISAILDQYVIGQKRAKKVLAVAVYNHYKRLRFGDKTAKDKEPVELGKSNILLVGPT 128

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++++  V
Sbjct: 129 GSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIV 188

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K I+  +A            
Sbjct: 189 Y-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTIASVPPQGG----- 234

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+                  V   +I  + 
Sbjct: 235 -------------------------RKHPQQEFL---------------QVDTSNILFIC 254

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I  R    GIG + E   +D       +                    
Sbjct: 255 GGAFAGLDKV--IRDRSEKGGIGFAAEVKSKDDKRNFGET-------------------- 292

Query: 303 AFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
             H   P D     L+PE  GR PV   L  L+K+    ILT+ ++ L  QY +L + EG
Sbjct: 293 -LHDLEPEDLVRYGLIPEFVGRLPVIATLDELDKAALIQILTEPKNALTKQYGKLFEMEG 351

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           + +DF  D++DA+A+ A+   +     GAR L+++ME VL D  +     +
Sbjct: 352 VQIDFRPDALDAVAERALERKT-----GARGLRSIMESVLLDTMYRIPSEE 397


>gi|78357262|ref|YP_388711.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123552156|sp|Q30Z80|CLPX_DESDG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78219667|gb|ABB39016.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/418 (24%), Positives = 172/418 (41%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
            SP EI + LD Y+IGQ  AK+ +++A+ N ++R      L DE  L   NILLVG +G 
Sbjct: 62  LSPAEIKARLDEYVIGQHTAKKILSVAVHNHYKRVFFAETLSDEVELEKSNILLVGSSGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + +  V  
Sbjct: 122 GKTLLAKTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAASKGIVY- 180

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                   G
Sbjct: 181 ------IDEIDKISRKGDGPSITRDVSGEGVQQALLKIIE-------------------G 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + +   G +K  +                       +   +I  +   
Sbjct: 216 TE----------ANIPPKGGRKHPQQEFI------------------RLDTSNILFIMGG 247

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             + LD+   I  R  G  +G   +   +   PL      S   G+++ + ++       
Sbjct: 248 AFIGLDKI--IEQRMHGGAMGFGVKVASKKETPL------SDLLGNVHPNDLVKF----- 294

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV  H+  L + D   IL + ++ L+ QY++L + + + L FT 
Sbjct: 295 ------GLIPEFIGRIPVITHVNELAEDDLVRILQEPKNALVRQYQKLFELDHVKLRFTS 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++ A+A  A+   +     GAR L+ V+E V+ +I F+   +   K  VI+   V  
Sbjct: 349 NALRAVARQAIERKT-----GARGLRNVLESVMLEIMFNLPSMTGVKECVINTAVVEE 401


>gi|34540240|ref|NP_904719.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188995414|ref|YP_001929666.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
 gi|46576403|sp|Q7MX10|CLPX_PORGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689262|sp|B2RL24|CLPX_PORG3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|34396552|gb|AAQ65618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           gingivalis W83]
 gi|188595094|dbj|BAG34069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Porphyromonas
           gingivalis ATCC 33277]
          Length = 411

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 182/425 (42%), Gaps = 82/425 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ DAKR +++A+ N ++R     D    E+   NI++VGPTG GKT
Sbjct: 66  PIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSDGVEIEKSNIIMVGPTGTGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++R +A++   PF  V+ T  TE GYVG ++E I+  L+  A   V+++ R  V     
Sbjct: 126 LLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADYDVKQAERGIV----- 180

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++ G +   E           I N    GG   
Sbjct: 181 --FIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLE---------GSIVNVPPQGG--- 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                           +  + +M        L             V   +   +E     
Sbjct: 227 ---------------RKHPEQKMIPVDTRHILF------------VCAGAFDGIEK---- 255

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                 KI  R +   +G +  G+Q                  I+ +++L          
Sbjct: 256 ------KIAQRLNTRVVGYTA-GLQN---------------RHIDRENML--RYIRPQDL 291

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PEI GR P+  HL+ L++   R I+T+ ++ +  QY++L   +GI + FT D +
Sbjct: 292 KSFGLIPEIIGRLPILTHLEPLDRDALRNIMTEPKNAITKQYEKLFAMDGIKVSFTSDML 351

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI--GD 425
           D + D A+        +GAR L++++E ++ D  F+    ++KT+V+D  Y   H+   D
Sbjct: 352 DFVVDKAIEFK-----LGARGLRSIVETIMMDAMFTMPSGKKKTLVVDKAYAEAHLNIDD 406

Query: 426 FPSET 430
              + 
Sbjct: 407 LLQDQ 411


>gi|293568082|ref|ZP_06679419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1071]
 gi|294617407|ref|ZP_06697041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1679]
 gi|291589164|gb|EFF20975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1071]
 gi|291596313|gb|EFF27572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1679]
          Length = 416

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 84/420 (20%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILL 58
           + T    P EI+  L+ Y+IGQ  AKR++A+A+ N ++R    A       EL   NI L
Sbjct: 57  EFTEVPKPLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V    
Sbjct: 117 IGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNV---- 172

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                      AE+ I+                            EID ++A  S ++S 
Sbjct: 173 ---------ERAEKGII-------------------------YIDEID-KIARKSENVSI 197

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   V     +   +                     + +  D+ 
Sbjct: 198 TRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTT 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F D  + IV    G        G Q   L   E    S     I  D + F
Sbjct: 241 NILFIVGGAF-DGIETIVKNRMGEKT--IGFGTQNQKLSEDE----SVMQHIIPEDLLKF 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +  
Sbjct: 294 ------------GLIPEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNT 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAE 417
            L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ F     +  + V+I  E
Sbjct: 342 ELEFEPEALRAIAKKAIERNT-----GARGLRSIIEEIMMDVMFDIPSNENIEKVIITKE 396


>gi|260438108|ref|ZP_05791924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
 gi|292809589|gb|EFF68794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
          Length = 436

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 172/418 (41%), Gaps = 84/418 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P EI + LD Y++GQ +AK+ +A+++ N ++R      + D   EL   NIL++GPTG
Sbjct: 66  LKPMEIKALLDEYVVGQDNAKKVLAVSVYNHYKRIIHKDSVVDDGVELQKSNILMLGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +         
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDI--------- 176

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                 AE+ I+                            EID ++   S ++S      
Sbjct: 177 ----DKAEKGII-------------------------YIDEID-KITKKSENVSITRDVS 206

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  V    L  L   +     +   +   Q+            LI +DT +     ++  
Sbjct: 207 GEGVQQALLKILEGTMASVPPQGGRKHPQQE------------LIQIDTTN-----ILFI 249

Query: 244 YGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
            G  F D  +KI+  R     IG +     +    + E                 F    
Sbjct: 250 CGGAF-DGLEKIIENRMDQKSIGFNSIIADKTDFEIGE-----------------FFDKV 291

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV V L  L++     I+T+ ++ L+ QY++L + + + L+ 
Sbjct: 292 LPQDLVKFGLIPEFVGRIPVTVALDMLDEDALVKIITEPKNALVKQYRKLFEYDEVQLEI 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           TE+++ A+A  ++   +     GAR L+++ME+ + D+ +    D      ++    +
Sbjct: 352 TEEAVRAIAKKSLERKT-----GARGLRSIMEKAMMDVMYEIPSDDNISKCIVTENTI 404


>gi|322411594|gb|EFY02502.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 409

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 169/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++
Sbjct: 58  LTEVPKPKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEY 418
           L F +++++A+A+ A+   +     GAR L++++E  + DI F     ++   V I    
Sbjct: 343 LAFDKEALEAIANKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVIKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|148241164|ref|YP_001226321.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           RCC307]
 gi|166215217|sp|A5GQ09|CLPX_SYNR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147849474|emb|CAK26968.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus
           sp. RCC307]
          Length = 449

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 164/422 (38%), Gaps = 81/422 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI + LD  ++GQ DAK+ +++A+ N ++R     D   E       L   NILL+G
Sbjct: 83  KPQEIKAHLDEQVVGQNDAKKVLSVAVYNHYKRLAWQGDGSTEPESSATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAEMMEVPFAVADATTLTEAGYVGEDVENILLRLLQKADGDVEQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 268

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D I  R   N IG             V G + + +    + +    + 
Sbjct: 269 ICGGAFVGLD--DVIQRRMGRNAIGF------------VPGETRNGRSRQKDQEASQVLR 314

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +          L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L
Sbjct: 315 NLEPDDLVKYGLIPEFIGRIPVSAVLEPLDEQALEAILTEPRDALVKQFQTLLSMDSVRL 374

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +F  +++ A+A  A    +     GAR L+ ++E ++ D+ +      E +  VI  E V
Sbjct: 375 EFQPEAVRAIAREAHRRKT-----GARALRGIIEDLMLDLMYDLPSQNEVQKFVITEELV 429

Query: 420 RL 421
             
Sbjct: 430 DE 431


>gi|314986604|gb|EFT30696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL005PA2]
          Length = 429

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 170/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      + + VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSGVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VPREAI 407


>gi|314919375|gb|EFS83206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL050PA1]
          Length = 429

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 167/426 (39%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD  +IGQ++AKR +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDASVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPEA--------------- 290

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                 + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 291 ----LSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|307729639|ref|YP_003906863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323526046|ref|YP_004228199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
 gi|307584174|gb|ADN57572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1003]
 gi|323383048|gb|ADX55139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. CCGE1001]
          Length = 423

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 176/426 (41%), Gaps = 82/426 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GKT
Sbjct: 69  PQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V     
Sbjct: 129 LLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY---- 184

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +   E                       
Sbjct: 185 ---IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE----------------------- 218

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                    + V   G +K                      + D +  D+  ++   G  
Sbjct: 219 ------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGGA 252

Query: 248 FLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           F D  +K IV R    GIG               G+SV +K    + D    +       
Sbjct: 253 F-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPED 294

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    +
Sbjct: 295 LIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAA 354

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +      
Sbjct: 355 LQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGKP 409

Query: 426 FPSETD 431
                D
Sbjct: 410 LLIYED 415


>gi|187923897|ref|YP_001895539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|296157828|ref|ZP_06840662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
 gi|238689607|sp|B2T404|CLPX_BURPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187715091|gb|ACD16315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           phytofirmans PsJN]
 gi|295892074|gb|EFG71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           sp. Ch1-1]
          Length = 423

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 176/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L++     IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|313836729|gb|EFS74443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA2]
 gi|314929865|gb|EFS93696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL044PA1]
 gi|314972292|gb|EFT16389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA3]
 gi|328907722|gb|EGG27486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium sp. P08]
          Length = 430

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 167/421 (39%), Gaps = 88/421 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59
           PRE+   LD ++IGQ++AKR +++A+ N ++R Q            D   EL   NILL+
Sbjct: 65  PRELCDFLDAWVIGQEEAKRTLSVAVYNHYKRIQSAVDVPHARRAEDDGVELGKSNILLL 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  S + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKSENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +       +  +VEG    +            +
Sbjct: 249 ILFIVGGSFAGLEDIITKRIGTRPLGFN---NDPGMRKVVEGPEAFS-----------LV 294

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                H      L+PE  GR P+   +  L++     ILT+  + L  Q+++L + +G+ 
Sbjct: 295 CPEDLHQ---FGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVE 351

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEY 418
           L F++ ++ A+AD AV   +     GAR L+ ++E  L D+ F     ++   VV+  E 
Sbjct: 352 LTFSDGALSAIADKAVAQGT-----GARGLRAIIEETLMDVMFDVPSREDVARVVVTREA 406

Query: 419 V 419
           +
Sbjct: 407 I 407


>gi|147770637|emb|CAN64542.1| hypothetical protein VITISV_013764 [Vitis vinifera]
          Length = 730

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 175/457 (38%), Gaps = 98/457 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKR----------------------------AVAIALRNRWR 39
           +P+EI   LD+++IGQ+ AK+                             +++A+ N ++
Sbjct: 269 TPKEICKGLDKFVIGQERAKKFSGIEVYIVEIGKWGHSFKRSNWCQTWEVLSVAVYNHYK 328

Query: 40  RQQLPA---------------DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           R    +               D   EL   N+LL+GPTG GKT +++ LAR    PF+  
Sbjct: 329 RIYHGSLQKGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIA 388

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT 144
           + T  T+ GYVG +VE I+  L+ VA   V+ +++  V            +D        
Sbjct: 389 DATTLTQAGYVGEDVESILYKLLTVAEFNVQAAQQGMVY-----------ID-------- 429

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
                                +++     ++  N             L ++         
Sbjct: 430 ---------------------EVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTDLKWS 468

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
             KI   +++    +    + +    D +  D+  ++   G  F+D    I  R   + I
Sbjct: 469 GYKILRGIKQXIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSI 528

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324
           G             +  + V T     + +    IA G         L+PE  GRFP+ V
Sbjct: 529 GFGAPVRANMRTGGLTNAVV-TSSLLESVESSDLIAYG---------LIPEFIGRFPILV 578

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L +L +     +LT+ ++ L  QYK+L     + L FTE ++  +A  A+  N+     
Sbjct: 579 SLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNT----- 633

Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           GAR L+ ++E +L +  +   D++     +DA  V  
Sbjct: 634 GARGLRALLESILTEAMYEIPDVKTGKDRVDAVVVDE 670


>gi|319941576|ref|ZP_08015902.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804946|gb|EFW01788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella
           wadsworthensis 3_1_45B]
          Length = 456

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 171/423 (40%), Gaps = 86/423 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-------DELMPKNILLVG 60
           +PRE+   LD Y+IGQ+ AKR +++A+ N ++R     D +        EL   N+LL+G
Sbjct: 80  TPRELYELLDNYVIGQERAKRTLSVAVFNHYKRLNTLGDKKLKALEDKVELQKSNVLLIG 139

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  LV  A   +  +++ 
Sbjct: 140 PTGSGKTLLAQTLARALDVPFAIADATTLTEAGYVGEDVENIVAKLVQAAGGDIERAQKG 199

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +   E  I     S  +    
Sbjct: 200 IIY-------LDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTI----ASMPVKGGR 248

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G ++  ++ S++                    +             M+ + R     
Sbjct: 249 KNPGKAMMEVDTSQIL-------------FICGGAFDG-----------MERIVRH---- 280

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                            R   + IG S   V +         +++  +  I T  ++   
Sbjct: 281 -----------------RTEKSEIGFSGTVVGKK------DHNLTDVFRQIETGDLV--- 314

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ LN+     ILT  ++ ++ QY+ L   E + +
Sbjct: 315 --------KYGLIPELVGRLPVITVLEELNEEALIEILTKPKNAIVRQYQVLFAMEDVDI 366

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +FT +++ A+A  A+   +     GAR L++++E +L D  F      +   V++    V
Sbjct: 367 EFTPEALKAIAHQAIERKT-----GARGLRSIIEALLLDTMFEIPSRTDVAKVIVTEAVV 421

Query: 420 RLH 422
              
Sbjct: 422 TAK 424


>gi|254302271|ref|ZP_04969629.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322463|gb|EDK87713.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 423

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E  ++D               S+ T+   F      
Sbjct: 268 ----------IKARTNKKVIGFGAEVQKQD---------------SMGTEGEFFKKVLPE 302

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 303 DLMK-QGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K + I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDAID 413


>gi|311743053|ref|ZP_07716861.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313733|gb|EFQ83642.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 422

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 105/420 (25%), Positives = 169/420 (40%), Gaps = 85/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            P EI + L+ Y+IGQ+ AKR+++ A+ N ++R Q         D + EL   NIL+VGP
Sbjct: 63  KPHEIFAFLEGYVIGQEGAKRSLSTAVYNHYKRVQAQSAGGRGKDDQVELAKSNILMVGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 123 TGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +         + I          S TR+V  + ++   +   E                 
Sbjct: 183 IY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILE----------------- 218

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                          + V   G +K                          +   ++  +
Sbjct: 219 ------------GTTASVPPQGGRKHPHQEFI------------------QIDTTNVLFI 248

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                  L+E   I  R+    +G + E            +S    Y  +    +L    
Sbjct: 249 VGGAFAGLEEI--IEQRNGKVSVGFNSEPSASTP------TSAEKTYARVEPTDLLKF-- 298

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   +  L+K     ILT+  + L  QY+ L + +GI L+
Sbjct: 299 ---------GLIPEFIGRLPVIASVNKLDKEALIRILTEPRNALSKQYERLFEIDGIELE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FTED+ D +A++A+       D GAR L++++E VL+   F      +   VV+D   VR
Sbjct: 350 FTEDAFDEMAELALKR-----DTGARGLRSIVEEVLQPTMFDVPSRDDAARVVVDGAVVR 404


>gi|22298053|ref|NP_681300.1| ATP-dependent protease ATP-binding subunit [Thermosynechococcus
           elongatus BP-1]
 gi|46576560|sp|Q8DLI1|CLPX_THEEB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22294231|dbj|BAC08062.1| ATP-dependent protease ATPase subunit [Thermosynechococcus
           elongatus BP-1]
          Length = 440

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/421 (23%), Positives = 171/421 (40%), Gaps = 83/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            PR+I   LD++++GQ +AK+ +A+A+ N ++R          D   EL   NILL+GPT
Sbjct: 80  KPRQIKEFLDKHVVGQHEAKKILAVAVYNHYKRLSLLDSDQRGDDNVELQKSNILLIGPT 139

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT  ++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V E++R  +
Sbjct: 140 GSGKTLSAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQNANMDVEEAQRGII 199

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +   E  I         +N    
Sbjct: 200 Y-------IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTI---------ANVPPQ 243

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG      +  ++            I       +  L +    R      V + ++  V 
Sbjct: 244 GGRKHPYQDCIQI--------DTTNILFICGGAFVGLEKTIEQR------VGKKAMGFVR 289

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                              +G  + +E    D+L  +E   +  KYG I           
Sbjct: 290 -------------------DGEPLPKEKRSADILKQLEPHDL-VKYGMI----------- 318

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                      PE  GR PV   L+ L+ +    ILT  ++ L+ QY++LM+ + + L F
Sbjct: 319 -----------PEFIGRIPVVAVLEPLDVAALADILTQPQNALLKQYQKLMRMDSVELRF 367

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
              +++A+A  A    +     GAR L+ ++E ++ D+ +     ++ +   I  E V  
Sbjct: 368 EPAAVEAIAQEAYRRKT-----GARALRAIVEEIMLDVMYELPSRKDLRECTITPEMVEK 422

Query: 422 H 422
            
Sbjct: 423 R 423


>gi|241764197|ref|ZP_04762231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
 gi|241366474|gb|EER60978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           delafieldii 2AN]
          Length = 421

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/418 (24%), Positives = 167/418 (39%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ  AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPVEIKANLDNYVIGQDQAKRTLAVAVYNHYKRLRHKDKAHKDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      D   +   +I  +   
Sbjct: 220 ---------GTMASVPPQGGRKHPNQ------------------DFLQIDTTNILFICGG 252

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R   +GIG    G           + V T+    +      I  G  
Sbjct: 253 AFAGLEKV--IENRTEASGIGF---GASVKSKKQRSLTEVFTEIEPED-----LIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 301 -------LIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            ++ A+A  A+   +     GAR L++++E+ L    F   +    + VV+D   +  
Sbjct: 354 AALKAIARKALARKT-----GARGLRSILEQALIGTMFDLPNTSNVEKVVVDESTIDE 406


>gi|160895261|ref|ZP_02076033.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50]
 gi|156863140|gb|EDO56571.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50]
          Length = 488

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 180/430 (41%), Gaps = 83/430 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P +I + LD Y+IGQ+ AK+ +++A+ N ++R    +    E+   N+L+VG
Sbjct: 123 LSLATIPAPHKIKAMLDEYVIGQEYAKKVMSVAVYNHYKRVLTDSMDDIEIEKSNMLMVG 182

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I + +A+L   P    + T  TE GY+G +VE ++  L+  A N V ++   
Sbjct: 183 PTGCGKTYIVKTIAKLLNVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKA--- 239

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDISNF 179
              E+  +  +E  +D +  K   SN+R+V  + ++ G +   E  +IEV   S   +  
Sbjct: 240 ---EKGIVFIDE--IDKI-AKKQNSNSRDVSGESVQQGLLKILEGAEIEVPVGSGSKNAM 293

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                               M +   K I       +P +      RL    ++      
Sbjct: 294 VP------------------MTTMNTKNILFICGGAFPAIEDIIKARLNKQSSI------ 329

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
               +     D++DK                   ++L  V    +               
Sbjct: 330 ---GFRADLKDKYDK-----------------DPNILKQVTNEDL--------------- 354

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                   R   ++PE  GR PV   L +L+K  +  IL + ++ ++ QYK+L+  + + 
Sbjct: 355 --------REFGMIPEFLGRLPVLFTLDALDKDMYIKILKEPKNAILKQYKKLLALDEVD 406

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L F + + +A+A+ A+  N+     GAR L+ ++E  + DI +    D     V+I  +Y
Sbjct: 407 LQFDDSAYEAIAEKAMKKNT-----GARALRAIIEEFMLDIMYQIPRDDSIGRVIITGDY 461

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 462 VNGKGSPIIE 471


>gi|284929121|ref|YP_003421643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium
           UCYN-A]
 gi|284809580|gb|ADB95285.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium
           UCYN-A]
          Length = 434

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 88/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-------DELMPKNILLVG 60
            P E+ + LD Y++GQ +AK+ +++A+ N ++R     +          +L   NILL+G
Sbjct: 83  KPIEVKNYLDEYVVGQDEAKKVLSVAVYNHYKRLNFLQEKDKQVEDNIVDLQKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   + +++R 
Sbjct: 143 PTGSGKTLLAQTLAKILEVPFAIADATSLTEAGYVGEDVENILFKLLQVADLDIHKAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +   E  I         +N  
Sbjct: 203 IIY-------IDEIDKIACKNENFSTTRDVSGEGVQQALLKILEGTI---------ANVS 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             GG                        +   Q C                 ++   I  
Sbjct: 247 PNGG-----------------------RKHPHQNCI---------------QINTKDILF 268

Query: 241 VENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           +     + LD   DK + + S   +        +  + L +          +N+D ++  
Sbjct: 269 ICGGAFISLDGIIDKRINKKSVGFVYSKDSYSDQGTIDLRQ---------KVNSDDLIKF 319

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GR PV   L +L +     ILT   + L+ QY++L+  + I 
Sbjct: 320 -----------GMIPELIGRLPVIASLNTLTEETLATILTKPRNALVKQYQKLLSMDDIE 368

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+FT+++I  +A+ A         +GAR L+ ++E ++ DI +        +  +I  + 
Sbjct: 369 LEFTKEAIKEIAEEAYRRK-----VGARALRGIIEELMLDIMYELPSHRNIQKFIITKKM 423

Query: 419 VRLH 422
           V+  
Sbjct: 424 VQKR 427


>gi|148244364|ref|YP_001219058.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326191|dbj|BAF61334.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 431

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 183/428 (42%), Gaps = 82/428 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPT 62
            ++++P+++ S L+ Y+IGQ+ AK+ +++A+ N ++R Q        EL   NIL++GPT
Sbjct: 67  NWDYTPKQLTSFLNDYVIGQEHAKKVLSVAVYNHYKRLQNDHISNEVELDKSNILMIGPT 126

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE ++++L+         ++R   
Sbjct: 127 GSGKTLLAQTLARILDIPFTVADATTLTEAGYVGDDVENVVKNLLSKCDFDPDRAQR--- 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                I   + I        + S TR+V  + ++      K I+  +A            
Sbjct: 184 ----GIIFIDEIDKISRRSDSPSITRDVSGEGVQQA--MLKLIEGTIASVPPQGG----- 232

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +                   + +T+  D+  ++ 
Sbjct: 233 -------------------------RKHP-----------------NQETIDVDTSNILF 250

Query: 243 NYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F D  DKI+ R      GIG S +   ++    +                 LF+ 
Sbjct: 251 ICGGAF-DGLDKIINRRVKKVTGIGFSVDVKDQNEEKALSD---------------LFVL 294

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                + +   L+PE+ GR PV+  L  L++     IL + ++++I Q++E+   EG+ L
Sbjct: 295 IQPEDLIK-FGLIPELVGRLPVQTVLSELDEIALVKILIEPKNSVIKQFQEIFSMEGVKL 353

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            F + S+ A+A +A+   +     GAR L++++E +L D  F    L + T VVID   V
Sbjct: 354 IFKKPSLLAIAKLAIKRKT-----GARGLRSILEDLLLDTMFELPSLLDVTEVVIDKTVV 408

Query: 420 RLHIGDFP 427
                   
Sbjct: 409 EKKKKPLI 416


>gi|91783521|ref|YP_558727.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans
           LB400]
 gi|123358810|sp|Q13Z14|CLPX_BURXL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91687475|gb|ABE30675.1| ClpX, ATPase regulatory subunit [Burkholderia xenovorans LB400]
          Length = 423

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 176/427 (41%), Gaps = 82/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      + EL   NILL+GPTG GK
Sbjct: 68  SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K IV R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVIVDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLREVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L++     IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPA 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L++++E+ L D+ +    ++    V+ID   +     
Sbjct: 354 ALQAVARKAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGISKVIIDDNVIDGDGK 408

Query: 425 DFPSETD 431
                 D
Sbjct: 409 PLLIYED 415


>gi|61657345|emb|CAI44263.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga naphthophila
           RKU-10]
          Length = 413

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 172/422 (40%), Gaps = 80/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D E+   N+LL+GPTG GK
Sbjct: 64  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A   +  ++   +    
Sbjct: 124 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAANFDIERAQYGII---- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 180 ----------------------------------YIDEID-KIAKKSPNPSITRDVSGEG 204

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+                  V   +I  +     
Sbjct: 205 VQQALLKILEGTIANVPPQGGRKHPYQEFIK---------------VDTRNILFIAGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+E   I  R     +G   E   +  + L E           +      +  G    
Sbjct: 250 DGLEEI--IKRRIQSTTMGFGAEIKSKKEMRLGE--------ILKHVTPDDLVQYG---- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L  L++ D   IL + ++ ++ QY++L + +G+ L+ T+++
Sbjct: 296 -----LIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           +  +A  A+   +     GAR L+ V E ++ D+ F   +L+  + VVI  E        
Sbjct: 351 LRIIAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVALGKEKP 405

Query: 426 FP 427
             
Sbjct: 406 IV 407


>gi|294784270|ref|ZP_06749565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_27]
 gi|294488136|gb|EFG35487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_27]
          Length = 423

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 162/417 (38%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E VQ+      EG                F      
Sbjct: 268 ----------IKARTNKKVIGFGAE-VQKQENAGAEGE---------------FFKKVLP 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR P+   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 302 EDLVRQGIIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K ++I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKKIIITKDTID 413


>gi|237742957|ref|ZP_04573438.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           4_1_13]
 gi|229430605|gb|EEO40817.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           4_1_13]
          Length = 423

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 162/417 (38%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E VQ+      EG                F      
Sbjct: 268 ----------IKARTNKKVIGFGAE-VQKQENAGAEGE---------------FFKKVLP 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR P+   L +L++     ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 302 EDLVRQGIIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K ++I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKKIIITKDTID 413


>gi|227548724|ref|ZP_03978773.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079191|gb|EEI17154.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 429

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 175/423 (41%), Gaps = 88/423 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILL 58
            P EIV  LDRY+IGQ  AKR +A+A+ N ++R +  +         D   E+   NILL
Sbjct: 66  KPSEIVGFLDRYVIGQDSAKRTLAVAVYNHYKRIRSQSPASLSSRKRDDDVEIAKSNILL 125

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 126 LGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADLDVDRAQ 185

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              +         + +          S TR+V  + ++   +   E  +           
Sbjct: 186 HGIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG--- 235

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +  ++         I   V   +  L +  ++R            
Sbjct: 236 --------------RKHPNQEFIQIDTTNILFIVAGAFAGLDKVIAER------------ 269

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             V   GI F  E D    RD+ N +G            ++ G  V  K+G         
Sbjct: 270 --VGKRGIGFGAEIDSKSERDNSNLLG-----------QVMPGDLV--KFG--------- 305

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+  +++ L++     +L + +++L+ QY  L   +G 
Sbjct: 306 -------------LIPEFIGRLPILANVEDLDRDALVRVLKEPKNSLVKQYSRLFALDGA 352

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+ T+D++  +AD A    +     GAR L+ +ME +L  + F   D ++ T VVI AE
Sbjct: 353 ELELTDDALGEIADRAAERKT-----GARGLRAIMEELLVPVMFDLPDREDVTRVVISAE 407

Query: 418 YVR 420
            VR
Sbjct: 408 VVR 410


>gi|15674910|ref|NP_269084.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes M1 GAS]
 gi|19745953|ref|NP_607089.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS8232]
 gi|21910140|ref|NP_664408.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS315]
 gi|28896161|ref|NP_802511.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes SSI-1]
 gi|71903336|ref|YP_280139.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS6180]
 gi|71910504|ref|YP_282054.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS5005]
 gi|94990258|ref|YP_598358.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10270]
 gi|94994179|ref|YP_602277.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10750]
 gi|306827518|ref|ZP_07460801.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|54036858|sp|P63794|CLPX_STRP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54036859|sp|P63795|CLPX_STRP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040896|sp|P63793|CLPX_STRP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123640038|sp|Q48U22|CLPX_STRPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215212|sp|Q1JHC2|CLPX_STRPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215213|sp|Q1J741|CLPX_STRPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13622051|gb|AAK33805.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes M1 GAS]
 gi|19748112|gb|AAL97588.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS8232]
 gi|21904333|gb|AAM79211.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes MGAS315]
 gi|28811411|dbj|BAC64344.1| putative ATP-dependent Clp protease subunit X [Streptococcus
           pyogenes SSI-1]
 gi|71802431|gb|AAX71784.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS6180]
 gi|71853286|gb|AAZ51309.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS5005]
 gi|94543766|gb|ABF33814.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10270]
 gi|94547687|gb|ABF37733.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS10750]
 gi|304430316|gb|EFM33342.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 409

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 170/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L F +++++A+A+ A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LAFDKEALEAIANKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|300811984|ref|ZP_07092441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497045|gb|EFK32110.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 417

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 180/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI +      +   V+I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRTPSESDISKVIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVADD 416


>gi|227551678|ref|ZP_03981727.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257884402|ref|ZP_05664055.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,501]
 gi|257887186|ref|ZP_05666839.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,141,733]
 gi|257895722|ref|ZP_05675375.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com12]
 gi|257898293|ref|ZP_05677946.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com15]
 gi|293377669|ref|ZP_06623858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium PC4.1]
 gi|293557138|ref|ZP_06675692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1039]
 gi|293571862|ref|ZP_06682878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E980]
 gi|294614149|ref|ZP_06694070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1636]
 gi|227179241|gb|EEI60213.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium
           TX1330]
 gi|257820240|gb|EEV47388.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,231,501]
 gi|257823240|gb|EEV50172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium 1,141,733]
 gi|257832287|gb|EEV58708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com12]
 gi|257836205|gb|EEV61279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus
           faecium Com15]
 gi|291592999|gb|EFF24587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1636]
 gi|291600707|gb|EFF31005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E1039]
 gi|291608116|gb|EFF37422.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium E980]
 gi|292643669|gb|EFF61790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecium PC4.1]
          Length = 416

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 84/420 (20%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILL 58
           + T    P EI+  L+ Y+IGQ  AKR++A+A+ N ++R    A       EL   NI L
Sbjct: 57  EFTEVPKPLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V    
Sbjct: 117 IGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNV---- 172

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                      AE+ I+                            EID ++A  S ++S 
Sbjct: 173 ---------ERAEKGII-------------------------YIDEID-KIARKSENVSI 197

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   V     +   +                     + +  D+ 
Sbjct: 198 TRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTT 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F D  + IV    G        G Q   L   E    S     I  D + F
Sbjct: 241 NILFIVGGAF-DGIETIVKNRMGEKT--IGFGTQNQKLSEDE----SVMQHIIPEDLLKF 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY++L+  +  
Sbjct: 294 ------------GLIPEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDDT 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAE 417
            L+F  +++ A+A  A+  N+     GAR L++++E ++ D+ F     +  + V+I  E
Sbjct: 342 ELEFEPEALRAIAKKAIERNT-----GARGLRSIIEEIMMDVMFDIPSNENIEKVIITKE 396


>gi|126659495|ref|ZP_01730628.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110]
 gi|126619229|gb|EAZ89965.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110]
          Length = 391

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 82/420 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
            P EI   LD Y+IGQ +AK+ +++A+ N ++R         D   EL   NILL+GPTG
Sbjct: 31  KPMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLNLVQGKNDDDNIELQKSNILLMGPTG 90

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R  + 
Sbjct: 91  SGKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIY 150

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +  K ++  VA+           G
Sbjct: 151 -------IDEIDKIARKSENPSITRDVSGEGVQQALL--KMLEGTVANVPPQ------GG 195

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                   +    S ++               +  L R      +    + + S+  V  
Sbjct: 196 RKHPYQDCIQIDTSNIL---------FICGGAFVGLER------VIEQRIGKKSMGFVR- 239

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                              G G S+E    DL+  VE   +  K+G I            
Sbjct: 240 ------------------PGEGQSKEKRTADLMQRVEPDDL-VKFGMI------------ 268

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                     PE  GR PV   L  L +     ILT   + L+ QY++L+  + + L+F+
Sbjct: 269 ----------PEFVGRIPVMAALNPLTEETLVAILTRPRNALVKQYQKLLNMDNVELEFS 318

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           E+++ A+A  A    +     GAR L+ ++E ++ D+ +     Q+ +  +I  E V   
Sbjct: 319 EEAVKAIAQEAYRRKT-----GARALRGIVEELMLDVMYELPSRQDVQKCMITKEMVEKR 373


>gi|256846929|ref|ZP_05552383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_36A2]
 gi|256717727|gb|EEU31286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 3_1_36A2]
          Length = 423

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 163/417 (39%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 191

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 192 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 229

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 230 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKI---------------------- 267

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I AR +   IG   E VQ+      EG                F      
Sbjct: 268 ----------IKARTNKKVIGFGAE-VQKQENAGAEGE---------------FFKKVLP 301

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR P+   L +L++ +   ILT  ++ ++ QY++L K EG+ L+FT+
Sbjct: 302 EDLVRQGIIPELVGRLPIISTLDNLDEQNLINILTKPKNAIVKQYQKLCKLEGVELEFTQ 361

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F        K ++I  + + 
Sbjct: 362 EALTEIAKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKKIIITKDTID 413


>gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
 gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales
           bacterium HTCC2181]
          Length = 425

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 184/427 (43%), Gaps = 84/427 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62
             P+E+  +LD ++IGQ++AK+++A+A+ N ++R Q+     +    ++   NIL +GPT
Sbjct: 65  LKPKELFLKLDEHVIGQEEAKKSLAVAVYNHYKRLQVSDHKDELSDVKISKSNILFIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LA L   PF+  + T  TE GYVG +VE I++ L+      + ++++  V
Sbjct: 125 GSGKTLLAQTLADLLQVPFVMADATTLTEAGYVGEDVENIMQKLLQRCDYDIDKAQKGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + +          S TR+V  + ++   +  K I+  VA            
Sbjct: 185 Y-------IDEVDKISRKTDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG----- 230

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                      +  + + V  D+  ++ 
Sbjct: 231 ------------------------------------------RKHPNQEFVQIDTTNILF 248

Query: 243 NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             G  F D  +KI+  R   N IG   E   +  +        + +    + D I F   
Sbjct: 249 ICGGAF-DGLEKIIKERTEKNSIGFGAEVQGKSDVKAFGDVVKNVQ----SEDLIRF--- 300

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   L+SL+K     ILT+ ++ L  Q+K+L + EG+ LD
Sbjct: 301 ---------GLIPEFIGRLPVITTLESLDKEALIRILTEPKNALTKQFKKLFRIEGVELD 351

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F  ++++A+A+ A+   S     GAR L++++E  L++  F     ++ + VVID   + 
Sbjct: 352 FRPEALEAIAEKALERKS-----GARGLRSILEIALKETMFELPTTKDLEKVVIDGNVIT 406

Query: 421 LHIGDFP 427
            +     
Sbjct: 407 DNTKPLM 413


>gi|72398636|gb|AAZ72731.1| ATP-dependent clp protease ATP-binding subunit [Bacillus
           thuringiensis serovar kurstaki]
          Length = 419

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 172/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V            
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------ 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +VA  S + S      G  
Sbjct: 171 -EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +                     + +  D+  ++   G 
Sbjct: 204 VQQALLKILEGTVASVPPQGGRKHP-----------------HQELIQIDTTNILFICGG 246

Query: 247 VFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  + I+ R  G   IG   E    D+      S V  +      D + F       
Sbjct: 247 AF-DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPE------DLLRF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L+      ILT  ++ L+ Q++EL++ + + L+F E 
Sbjct: 293 -----GLIPEFIGRLPVIANLEPLDGDALVDILTKPKNALVKQFQELLELDDVELEFEEG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 348 ALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 397


>gi|158336586|ref|YP_001517760.1| ATP-dependent protease ATP-binding subunit ClpX [Acaryochloris
           marina MBIC11017]
 gi|189082482|sp|B0C146|CLPX_ACAM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158306827|gb|ABW28444.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acaryochloris
           marina MBIC11017]
          Length = 447

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 170/434 (39%), Gaps = 89/434 (20%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------EL 51
           + L     PR+I S LD ++IGQ +AK+ +++A+ N ++R  +     D         EL
Sbjct: 73  LSLNQIPKPRDIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSISQASADSVAELDDAIEL 132

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 133 QKSNILLIGPTGCGKTLLAQTLAQMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 192

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
             V E++R  +                                         EID +VA 
Sbjct: 193 LDVEEAQRGII--------------------------------------YIDEID-KVAR 213

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S + S      G  V    L  L   V     +   +   Q C                
Sbjct: 214 KSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI--------------- 258

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I  +     V LD+   I  R     +G     +Q   L   E  +        
Sbjct: 259 QIDTTNILFICGGAFVGLDKI--IEQRTGKKAMGF----IQDGELRAKEQRTADMLRDLE 312

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
             D + F             ++PE  GR PV   + +L++     ILT+  + L+ QY++
Sbjct: 313 AEDLVKF------------GMIPEFTGRIPVMSVIDALDEDVLCQILTEPRNALVKQYQK 360

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L++ + + L+F  D+I A+A  A    +     GAR L+ ++E ++ D+ +       K 
Sbjct: 361 LLRMDRVELEFQPDAIRAIAQEAYRRRT-----GARALRAIVEEIMLDVMYELPSQSRKE 415

Query: 412 VV---IDAEYVRLH 422
           +    I    V   
Sbjct: 416 LTQCLITRSMVEQR 429


>gi|251772220|gb|EES52790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Leptospirillum ferrodiazotrophum]
          Length = 434

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 170/418 (40%), Gaps = 79/418 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   LD+YIIGQ+ AK+ +++A+ N ++R +      D EL   NI+++GPTG G
Sbjct: 68  MKPSEIKRALDQYIIGQERAKKILSVAVYNHYKRARANKISEDVELQKGNIIMLGPTGTG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++        
Sbjct: 128 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAE------- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             I   + I          S TR+V  + ++   +  K ++  VA+              
Sbjct: 181 WGIIYIDEIDKISRKSENPSITRDVSGEGVQQALL--KLVEGTVANVPPQGG-------- 230

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                              ++          V   +I  +    
Sbjct: 231 ------------------------------RKHPHQEFI-------QVDTTNILFICGGA 253

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD    I  R +   +G   E  +     ++ G               LF+ +    
Sbjct: 254 FVGLDSI--ISQRLARKTMGFGAE-SKPAQDRILSGK--------------LFMEARPDD 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   ++PE  GRFPV   L+ L++  F  ILT  ++ L+ Q+++L   E + L FTED
Sbjct: 297 LLK-YGIIPEFIGRFPVMAILEDLDEEAFLQILTQPKNALVKQFEKLFAIEKVKLRFTED 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++ A+A  A    +     GAR L+ ++E V+ D+ +    L     VVI    +   
Sbjct: 356 ALRAVAHKAYTQKT-----GARGLRAILEEVMLDLMYDIPSLSNLSEVVITEGAITAK 408


>gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Alicycliphilus denitrificans BC]
 gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
 gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans BC]
 gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
          Length = 421

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 167/424 (39%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDSYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE I++ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG       +    L E           + +    I  G  
Sbjct: 251 GGAFAGLEKVIENRTEASGIGFGAAVKSKKQRSLTE--------VFQDIEPEDLIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 301 -------LIPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++ A+A  A+   +     GAR L++++E+ L    F   ++   + VV+D   +    
Sbjct: 354 AALKAIARKAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEATIEESK 408

Query: 424 GDFP 427
               
Sbjct: 409 APLL 412


>gi|325125526|gb|ADY84856.1| ATP-dependent protease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 417

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 180/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI +      +   V+I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRTPSESDISKVIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVADD 416


>gi|218679700|ref|ZP_03527597.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CIAT
           894]
          Length = 191

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 133/191 (69%), Positives = 160/191 (83%)

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           VFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGAFHV
Sbjct: 1   VFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGAFHV 60

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           S+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+FT+D+
Sbjct: 61  SKPSDLLPELQGRLPIRVELRALNKEDFRRILTETEASLIRQYRALMETERLSLEFTDDA 120

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D     + IDA YVR H+GD 
Sbjct: 121 IDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAITIDAAYVREHVGDL 180

Query: 427 PSETDMYHFIL 437
              TD+  FIL
Sbjct: 181 AQNTDLSRFIL 191


>gi|297621813|ref|YP_003709950.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia
           chondrophila WSU 86-1044]
 gi|297377114|gb|ADI38944.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia
           chondrophila WSU 86-1044]
          Length = 415

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 169/418 (40%), Gaps = 79/418 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P+EI  +LD YIIGQ+ AKRA+++A+ N ++R Q      D E    N+LL GPTG G
Sbjct: 60  LKPKEIKEKLDEYIIGQEKAKRAISVAVYNHYKRVQSLGKESDIEFNKSNVLLFGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA +   PF   + T  TE GYVG +VE II  LV  A   + ++    +   
Sbjct: 120 KTLIAKTLAHILDVPFTIADATTLTEAGYVGEDVENIILRLVQAADYDIAKAELGII--- 176

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  T+S++S      G 
Sbjct: 177 -----------------------------------YIDEID-KINRTTSNVSITRDVSGE 200

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   +     K   +   Q+                  V+ ++I  +    
Sbjct: 201 GVQQALLKIVEGTIANVPPKGGRKHPNQEYIK---------------VNTENILFIIGGA 245

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   +  R   + IG S +          EG S+              ++     
Sbjct: 246 FVNLDQI--VAKRLGRSTIGFSSQ----------EGKSIDP------HQKSQLLSQVEPE 287

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
               + ++PE  GRF    +   L   D  LILT+ ++ +I QY  + + E + L FT++
Sbjct: 288 DLIQSGMIPEFVGRFHTIANCNELTVDDLVLILTEPKNAVIKQYISMFEMEDVKLSFTDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++  +A  A+   +     GAR L+ ++E  + D+ F    D   + ++ID E +   
Sbjct: 348 ALQEVAKKAIEAGT-----GARALRMILENAMRDLMFEVPSDKTIQEIIIDKETITDQ 400


>gi|300934278|ref|ZP_07149534.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           resistens DSM 45100]
          Length = 424

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 167/420 (39%), Gaps = 88/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P EI   LD Y+IGQ +AKR +A+A+ N ++R ++          D   EL   NIL++
Sbjct: 61  KPSEIAKFLDTYVIGQDEAKRTLAVAVYNHYKRIKVEEANAGARRSDDEVELSKSNILML 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 121 GPTGSGKTYLAQSLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +            
Sbjct: 181 GIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG---- 229

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++       K +   V   +  L +                  
Sbjct: 230 -------------RKHPNQEFIQFDTKNVLFIVAGAFAGLEKV----------------- 259

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                          I  R    G+G   E                   G  + +   F 
Sbjct: 260 ---------------ISERRGKKGLGFGAEIS-----------------GKKDEEPNPFQ 287

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                 + +   L+PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L + +G+ 
Sbjct: 288 FVEPEDLVK-FGLIPELIGRLPVVTHVGHLDEDALVRVLTEPKNSLVRQYQRLFEMDGVR 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L FT++++  +A  A+   +     GAR L+++ME +L  I F+   D +   VVI  E 
Sbjct: 347 LSFTDEALQEIAQQALARET-----GARGLRSIMESILLPIMFAIPEDEKTGEVVITGEC 401


>gi|114771110|ref|ZP_01448550.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
 gi|114548392|gb|EAU51278.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium
           HTCC2255]
          Length = 420

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 160/403 (39%), Gaps = 79/403 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AKR +++A+ N ++R        + EL   NILLVGPTG GK
Sbjct: 65  TPAKICQILDDYVIGQDVAKRVLSVAVHNHYKRLDHSDTNEEIELSKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  + R  V    
Sbjct: 125 TLLAQTLARVIDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAERGIV---- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                E+D ++   S + S      G  
Sbjct: 181 ----------------------------------YIDEVD-KITRKSDNPSITRDVSGEG 205

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLK---------------VDTTNILFICGGAF 250

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R  G+GIG   +      +   E   +   +  +  + +L         
Sbjct: 251 AGLDKI--ISQRGQGSGIGFGAD------VKDEESRGIGEIFSEMEPEDLLKF------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L++     IL++ ++ L+ QY+ L   E   L FT+++
Sbjct: 296 ----GLIPEFVGRLPVLATLTDLDEDALVTILSEPKNALVKQYQTLFSLENTNLTFTDEA 351

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + A+A  A+   +     GAR L++++E +L +  F    L+ 
Sbjct: 352 LKAIAKRAIARKT-----GARGLRSILEDILLNTMFELPGLKN 389


>gi|50914054|ref|YP_060026.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS10394]
 gi|61211417|sp|Q5XCM0|CLPX_STRP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50903128|gb|AAT86843.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus
           pyogenes MGAS10394]
          Length = 409

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 169/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LEFDKAALEAIATKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|104773862|ref|YP_618842.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422943|emb|CAI97605.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 417

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 180/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI +      +   ++I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRTPSESDISKIIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVVDD 416


>gi|288905456|ref|YP_003430678.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus UCN34]
 gi|325978446|ref|YP_004288162.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732182|emb|CBI13747.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus UCN34]
 gi|325178374|emb|CBZ48418.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 409

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 166/425 (39%), Gaps = 84/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E+++ LD Y++GQ  AKRA+A+A+ N ++R        +E   L   NIL++GPTG 
Sbjct: 63  KPKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 183 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 224

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 225 ------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIGFGQNN 272

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE                +E +  D+                             
Sbjct: 273 RK--IDE-----------NASYMQEIISEDIQKF-------------------------- 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +
Sbjct: 294 ------GLIPEFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDK 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++ A+A+ A+   +     GAR L++++E  + DI F     +E T V I    V    
Sbjct: 348 DALQAIANKAIERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKVRITKAAVEGKD 402

Query: 424 GDFPS 428
                
Sbjct: 403 KPILE 407


>gi|325684388|gb|EGD26557.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 417

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 180/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI +      +   V+I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRTPSESDISKVIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVTDD 416


>gi|297571130|ref|YP_003696904.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931477|gb|ADH92285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 422

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/421 (23%), Positives = 176/421 (41%), Gaps = 89/421 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKNILLV 59
            P EI   L++Y++GQ+ AKR +A+A+ N ++R +               E+   NILL+
Sbjct: 64  KPAEIFEFLNQYVVGQERAKRTLAVAVYNHYKRIRSQQGSSLAKQSPNDVEIGKSNILLM 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A + V  ++R
Sbjct: 124 GPTGTGKTYLAQSLAKMLDVPFAIADATALTEAGYVGEDVENILLKLIQAAGDDVERAQR 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 184 GIIY-------IDEIDKISRKSENPSITRDVSGEGVQQALLKI--IEGTVASVPPQGG-- 232

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                                        +   Q+             ID+DT +     
Sbjct: 233 ----------------------------RKHPQQE------------FIDIDTSN----- 247

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++      F    D + +R    GIG   +  + D      G+ V  +    +       
Sbjct: 248 VLFIVAGAFAGMEDIVSSRTGRRGIGFGAKLHEADH-----GAEVFREVTPED------- 295

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GR P+  +++ L   D   ILT  ++ L+ QY+++   +G+I
Sbjct: 296 -------LHKFGIIPELIGRLPIITNVEELTVDDLVQILTTPKNALLKQYQKMFALDGVI 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           LD T  ++ A+A+ A+   +     GAR L+++ME +L ++ F      + + VVID + 
Sbjct: 349 LDMTPAALRAIAEEAIARGT-----GARGLRSIMENLLRELMFDIPSRDDVERVVIDEDV 403

Query: 419 V 419
           V
Sbjct: 404 V 404


>gi|163857102|ref|YP_001631400.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella petrii
           DSM 12804]
 gi|229889853|sp|A9IR50|CLPX_BORPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|163260830|emb|CAP43132.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella petrii]
          Length = 432

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 177/419 (42%), Gaps = 85/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPSEIKTFLDQYVIGQTLPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R      
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR------ 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 180 AIIYIDE-IDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFIVG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDHILFIASGA 303
             F D  +K++  R   +GIG S     +    + E  S V  +      D I F     
Sbjct: 250 GAF-DGLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPE------DLIKF----- 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L  L+++    ILT+ +++LI Q+++L   EG  LD  
Sbjct: 298 -------GLIPELVGRLPVVATLDELDEAALVQILTEPKNSLIKQFQKLFAMEGAELDVR 350

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
             ++ A+A  A+   +     GAR L++++E  L D  +          VV+D   +  
Sbjct: 351 PGALKAIARKALKRKT-----GARGLRSIIEAALLDTMYDLPSQGNVSRVVLDENVIDS 404


>gi|121611286|ref|YP_999093.1| ATP-dependent protease ATP-binding subunit ClpX [Verminephrobacter
           eiseniae EF01-2]
 gi|121555926|gb|ABM60075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verminephrobacter eiseniae EF01-2]
          Length = 447

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/424 (25%), Positives = 171/424 (40%), Gaps = 92/424 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---DELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ++AKR +A+A+ N ++R +     R    EL   NILL+GPTG 
Sbjct: 93  TPAEIKNNLDNYVIGQEEAKRTLAVAVYNHYKRLRYKEKARKNDVELSKSNILLIGPTGS 152

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 153 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCGYKVEPAQRGIVY- 211

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                     +D                             +I+     SD  +      
Sbjct: 212 ----------ID-----------------------------EIDKISRKSDNPSITRDVS 232

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  L +L    M S   +  R    +              D   +    I  +   
Sbjct: 233 GEGVQQALLKLIEGTMVSVPPQGGRKHPNQ--------------DFLQIDTSDILFICGG 278

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R   +GIG               G+SV +K     TD         F
Sbjct: 279 AFAGLEKV--IENRTEASGIGF--------------GASVKSKKQRSLTD--------VF 314

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE+ GR PV   L  L++     ILT+  + LI QY +L+  EG+ 
Sbjct: 315 AEVEPEDLIKFGLIPELVGRMPVVTALAELSEQALIQILTEPRNALIKQYGKLLAMEGVN 374

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+    ++ ++A  A+   +     GAR L++++E+ L    F   +    + VVID   
Sbjct: 375 LEIRPAAMQSIARKALARKT-----GARGLRSILEQSLIGTMFDLPNTSNVERVVIDEST 429

Query: 419 VRLH 422
           +  +
Sbjct: 430 IEEN 433


>gi|300780634|ref|ZP_07090489.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533620|gb|EFK54680.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 426

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 167/423 (39%), Gaps = 88/423 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           P EI S LD+Y+IGQ  AKR +A+A+ N ++R +            D   E+   NILL+
Sbjct: 67  PSEITSFLDQYVIGQDRAKRTLAVAVYNHYKRVRTEKSAASGARKRDEDVEIAKSNILLL 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A         
Sbjct: 127 GPTGSGKTYLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLLQAAD-------F 179

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D  R Q  I   + +          S TR+V  + ++   +   E  +            
Sbjct: 180 DVNRAQNGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG---- 235

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++         I   V   +  L +  ++R             
Sbjct: 236 -------------RKHPNQEFIQLDTTNILFIVAGAFDGLDKVIAER------------- 269

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            V   GI F  E D    R+  N +      VQ + L          K+G          
Sbjct: 270 -VGKKGIGFGAEIDSAAEREEANMLAQ----VQPEDL---------VKFG---------- 305

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   +++L++     +LT+ +++L+ QY+ L   +G  
Sbjct: 306 ------------LIPEFIGRLPILAAVENLDEESMVRVLTEPKNSLVKQYQRLFNMDGAQ 353

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L F + ++ A+A  A    +     GAR L+ +ME +L  I +   D  +   VVI    
Sbjct: 354 LRFDDGALSAVAKKAAERGT-----GARGLRAIMEEILVPIMYDLPDRDDVDEVVITDAV 408

Query: 419 VRL 421
           V  
Sbjct: 409 VND 411


>gi|306831538|ref|ZP_07464696.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426323|gb|EFM29437.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 409

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 166/425 (39%), Gaps = 84/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E+++ LD Y++GQ  AKRA+A+A+ N ++R        +E   L   NIL++GPTG 
Sbjct: 63  KPKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 183 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 224

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 225 ------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIGFCQNN 272

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE                +E +  D+                             
Sbjct: 273 RK--IDE-----------NASYMQEIISEDIQKF-------------------------- 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +
Sbjct: 294 ------GLIPEFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDK 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++ A+A+ A+        IGAR L++++E  + DI F     +E T V I    V    
Sbjct: 348 DALQAIANKAIERK-----IGARGLRSIIEETMMDIMFEIPSQEEVTKVRITKAAVEGKD 402

Query: 424 GDFPS 428
                
Sbjct: 403 KPILE 407


>gi|297566269|ref|YP_003685241.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           silvanus DSM 9946]
 gi|296850718|gb|ADH63733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           silvanus DSM 9946]
          Length = 399

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/421 (24%), Positives = 165/421 (39%), Gaps = 88/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI S LD+Y+IGQ+  KR +++A+ N ++R   P     E+   NILL+GPTG GKT
Sbjct: 60  KPAEIKSFLDQYVIGQEVPKRVLSVAVYNHYKRLMHPE---AEIQKSNILLIGPTGTGKT 116

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LAR+   PF   + T  TE GYVG +VE +I  L+  A   V  + R  +     
Sbjct: 117 LMAETLARMLDVPFAIADATTLTEAGYVGEDVENVILRLLQAADFDVEAAERGIIY---- 172

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +   E                       
Sbjct: 173 ---IDEIDKIARKSENPSLTRDVSGEGVQQALLKIIE----------------------- 206

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                    + V   G +K                          V+  +I  +      
Sbjct: 207 ------GTIANVPPQGGRKHPHQEFV------------------QVNTKNILFILGGAFE 242

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD   K  AR   + IG ++     + L ++    V                       
Sbjct: 243 GLDRILK--ARVDQHPIGFTKAKFNPEKLEVIPEDLV----------------------- 277

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV V L +L++     ILT+ ++ L+ QY+ELM+ EGI L FT   +
Sbjct: 278 -RYGLIPEFVGRVPVVVGLDALDEESLVRILTEPKNALVRQYQELMRMEGIELKFTPAVL 336

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
             +A  A+   +     GAR L+ V+E+ + D+ + A       + +D  ++   +    
Sbjct: 337 REVARRALKRGT-----GARGLRAVIEKAMVDLMYEAPGSGVWEITVDLPHLDKPLAALE 391

Query: 428 S 428
            
Sbjct: 392 E 392


>gi|297734727|emb|CBI16961.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 173/449 (38%), Gaps = 106/449 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKR--------------------AVAIALRNRWRRQQLPA-- 45
           +P+EI   LD+++IGQ+ AK+                     +++A+ N ++R    +  
Sbjct: 125 TPKEICKGLDKFVIGQERAKKLDFIPFSDFLVRSNWCQTWEVLSVAVYNHYKRIYHGSLQ 184

Query: 46  -------------DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
                        D   EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ 
Sbjct: 185 KGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 244

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE I+  L+ VA   V+ +++  V            +D                
Sbjct: 245 GYVGEDVESILYKLLTVAEFNVQAAQQGMVY-----------ID---------------- 277

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
                        +++     ++  N             L ++    + +  +K  R   
Sbjct: 278 -------------EVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHP 324

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           +                 D +  D+  ++   G  F+D    I  R   + IG       
Sbjct: 325 RG----------------DNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRA 368

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
                 +  + V T     + +    IA G         L+PE  GRFP+ V L +L + 
Sbjct: 369 NMRTGGLTNAVV-TSSLLESVESSDLIAYG---------LIPEFIGRFPILVSLSALTED 418

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               +LT+ ++ L  QYK+L     + L FTE ++  +A  A+  N+     GAR L+ +
Sbjct: 419 QLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNT-----GARGLRAL 473

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +E +L +  +   D++     +DA  V  
Sbjct: 474 LESILTEAMYEIPDVKTGKDRVDAVVVDE 502


>gi|139473950|ref|YP_001128666.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
 gi|166215214|sp|A2RF17|CLPX_STRPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134272197|emb|CAM30443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pyogenes str. Manfredo]
          Length = 409

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 169/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LEFDKAALEAIATKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|116074349|ref|ZP_01471611.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
 gi|116069654|gb|EAU75406.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           RS9916]
          Length = 451

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 163/428 (38%), Gaps = 80/428 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI + LD  ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPQEIKAFLDHQVVGQDAAKKVLSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 268

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG       R           +     +  D ++   
Sbjct: 269 ICGGAFVGLD--DVVQKRMGRNAIGFVPSSDGRGRNKASRDLQAAQVLRHLEPDDLV--- 323

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L++   + ILT+    L+ Q++ L+  + + L
Sbjct: 324 --------RYGLIPEFIGRMPVSAVLEPLDEEALKSILTEPRDALVKQFRTLLSMDNVQL 375

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           DF  ++++A+A  A    +     GAR L+ ++E ++ D+ +     +  K   +    V
Sbjct: 376 DFETEAVEAIASEAHRRKT-----GARALRGIVEELMLDLMYDLPSRKNVKNFTVTRTMV 430

Query: 420 RLHIGDFP 427
             H G   
Sbjct: 431 EEHTGGKV 438


>gi|89092955|ref|ZP_01165907.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
 gi|89082980|gb|EAR62200.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp.
           MED92]
          Length = 416

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 168/416 (40%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AK+ +A+A+ N ++R +   + +   EL   NILL+GPTG G
Sbjct: 57  TPAELSAALDEYVIGQERAKKVLAVAVYNHYKRLRFQKNDKSGVELGKSNILLIGPTGSG 116

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 117 KTLLAQTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQLGIVY-- 174

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA            G  
Sbjct: 175 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ------GGRK 221

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L    S ++               +  L +      I  D   + SI       
Sbjct: 222 HPQQEFLQVDTSNIL---------FICGGAFAGLEQ------IIRDRSEKSSIGF----- 261

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                         S        E    D L  +E   +  KYG I              
Sbjct: 262 --------------SAVVKSKDEEKTVSDSLTELEAEDL-VKYGLI-------------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                   PE  GR P+   L  L++     ILT+ +++L  QY  L   EG  +DF ++
Sbjct: 293 --------PEFVGRLPMIATLAELDEEALVQILTEPKNSLTKQYAALFDMEGAEVDFRQE 344

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E  L DI +    ++    VVID   + 
Sbjct: 345 ALLAVAQKALERKT-----GARGLRSILEATLLDIMYQLPSMENVSKVVIDEGVIE 395


>gi|213966172|ref|ZP_03394358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
 gi|213951187|gb|EEB62583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium amycolatum SK46]
          Length = 443

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 168/417 (40%), Gaps = 82/417 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGVG 65
           P EI   LD Y+IGQ  AKR +A+A+ N ++R +      D   EL   NILL+GPTG G
Sbjct: 89  PMEIRDFLDEYVIGQDMAKRTLAVAVYNHYKRLRAAETKSDNDVELQKSNILLLGPTGCG 148

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+      V +++R  +   
Sbjct: 149 KTYLAQTLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQATDFDVEKAQRGIIYV- 207

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I         TS TR+V  + ++   +   E  +                  
Sbjct: 208 ------DEIDKISRKSENTSITRDVSGEGVQQALLKILEGTVAAVPPQGG---------- 251

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +L ++         +   V   +  L +      +  + V +  +    +  
Sbjct: 252 -------RKLPNQEFIQFDTSNVLFIVAGAFAGLEK------VVQERVGKKGLGFGAD-- 296

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + + +  +     R+ +  DL+                             
Sbjct: 297 ---------VTSANDEDMKDPFRDVLPEDLVRF--------------------------- 320

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   + +L++     +LT+ +++L+ QY+ L   +G+ L   ++
Sbjct: 321 -----GLIPEFIGRLPVIASVTNLDEDALVRVLTEPKNSLVRQYQHLFDMDGVRLTIDDE 375

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
           ++ A+A  A++ N+     GAR L+ +ME +L  + F   +  + T V++  E +  
Sbjct: 376 ALRAIAAKAISRNT-----GARGLRGIMEEILVPVMFEVPERDDVTEVIVHKECITD 427


>gi|255994161|ref|ZP_05427296.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum
           ATCC 49989]
 gi|255993829|gb|EEU03918.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum
           ATCC 49989]
          Length = 511

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/338 (35%), Positives = 199/338 (58%), Gaps = 6/338 (1%)

Query: 101 QIIRDLVD-VAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159
             + +LV   +    ++   +E++++ +  AE    +         +TRE  ++    G+
Sbjct: 179 SDLANLVQTSSGYKSQKEEYEEIKKRENDAAE---TEDSKDDAMGEHTREKIKELFYAGK 235

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           + D+EI+  + +     S  +       GI        + +   +K+K +  V +    L
Sbjct: 236 LEDEEIEFTMENAPK--SEINQLDLEDRGISIALGNIFENLSPSKKQKRKGKVSEARTLL 293

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
           +  E+  +IDM+ + +++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP+V
Sbjct: 294 INQEAQAMIDMEEIKKNAIENAENNGIIFIDEIDKIASSGYKGGQDVSREGVQRDILPIV 353

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           EGS V TKYG + T+HILFI +GAFH+S+ ++L+PE+QGRFP+RV L +L++ + + IL 
Sbjct: 354 EGSVVKTKYGPVKTNHILFIGAGAFHISKVSELIPELQGRFPIRVDLDNLSEENLKRILV 413

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + E+ +I Q  EL++TEG+ + FT+D+ID +A +A   N    +IGARRL T++++ LED
Sbjct: 414 EPENAIIKQNIELLETEGVKVTFTDDAIDEIAKLAYIYNEQRENIGARRLHTIVDKTLED 473

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ISF   D + K   IDA++++    D   + D+  FIL
Sbjct: 474 ISFEVPDEKIKDYTIDAKFIKEKFKDDLKDEDLDRFIL 511



 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/147 (54%), Positives = 110/147 (74%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K T   +P+E V+ LD+YIIGQ DAK+ VAIA+RNR+RR +L  +++DE+ PKNIL+ GP
Sbjct: 6   KNTTVLTPKETVARLDKYIIGQDDAKKKVAIAMRNRYRRAKLSEEMQDEVTPKNILMKGP 65

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT I+RRLA+L  APFIKVE TKFTE+GYVGR+VE +IRDLV  ++  VR  + ++
Sbjct: 66  TGCGKTEIARRLAKLIDAPFIKVEATKFTEVGYVGRDVESMIRDLVTKSVMDVRMQKINK 125

Query: 122 VREQASINAEERILDALVGKTATSNTR 148
           V E+AS    E +++A+V K   +N +
Sbjct: 126 VNEKASKIVNEILINAIVEKYKKNNKQ 152


>gi|257865954|ref|ZP_05645607.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC30]
 gi|257872287|ref|ZP_05651940.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC10]
 gi|257875581|ref|ZP_05655234.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC20]
 gi|257799888|gb|EEV28940.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC30]
 gi|257806451|gb|EEV35273.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC10]
 gi|257809747|gb|EEV38567.1| ATP-dependent protease ATP-binding subunit [Enterococcus
           casseliflavus EC20]
          Length = 417

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/421 (26%), Positives = 173/421 (41%), Gaps = 82/421 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           + T    P+E+++ L+ Y+IGQ  AKR +A+A+ N ++R  +     D EL   NI L+G
Sbjct: 60  EFTEVPKPQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V      
Sbjct: 120 PTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAADYNV------ 173

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                    AE+ I+                            EID ++A  S ++S   
Sbjct: 174 -------EMAEKGII-------------------------YIDEID-KIARKSENVSITR 200

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L         +   +   Q+               M  +   +I  
Sbjct: 201 DVSGEGVQQALLKILEGTTASVPPQGGRKHPHQE---------------MIQIDTTNILF 245

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +        D  + IV    G        G   +   L EG SV  +   I  D + F  
Sbjct: 246 IVGGAF---DGIETIVKNRLGEKTI----GFGTNNKRLEEGESVMQQI--IPEDLLKF-- 294

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY++LM  +   L
Sbjct: 295 ----------GLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTEL 344

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +F  +++ A+A  A+  N+     GAR L++++E ++ D+ F+   D   + V I  E  
Sbjct: 345 EFEPEALRAIAAQAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIQKVTITEEAA 399

Query: 420 R 420
           +
Sbjct: 400 K 400


>gi|120610145|ref|YP_969823.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|326316314|ref|YP_004233986.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|166214750|sp|A1TM61|CLPX_ACIAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120588609|gb|ABM32049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           citrulli AAC00-1]
 gi|323373150|gb|ADX45419.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 421

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 170/424 (40%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPSEIKANLDNYVIGQEIAKRTLAVAVYNHYKRLRHKDKAGKDEVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG    G           + V T+    +      I  G  
Sbjct: 251 GGAFAGLEKVIENRTEASGIGF---GAAVKSKKQRSLTEVFTEIEPED-----LIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 301 -------LIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++ A+A  A+   +     GAR L++++E+ L    F   +    + VV+D   +  + 
Sbjct: 354 AALKAIARKALARKT-----GARGLRSILEQSLIGTMFDLPNTSNVEKVVVDESTIEENK 408

Query: 424 GDFP 427
               
Sbjct: 409 APLL 412


>gi|171778305|ref|ZP_02919511.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283005|gb|EDT48429.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 409

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 168/425 (39%), Gaps = 84/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R        +E   L   NILL+GPTG 
Sbjct: 63  KPKELLATLDEYVVGQERAKRALAVAVYNHYKRVSFAESRDEEDVELQKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 183 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 224

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 225 ------GGRKHPNQEMIQINTKNILFIVGGAFDGIEDIVKQRL------GEKVIGFGQNN 272

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE                +E +  D+                             
Sbjct: 273 RK--IDE-----------DASYMQEIISEDIQKF-------------------------- 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F E
Sbjct: 294 ------GLIPEFIGRLPVVAALEQLTTDDLVRILTEPRNALVKQYQTLLSYDGVELEFDE 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++ A+A+ A+   +     GAR L++++E  + DI F     +E T V I  + V    
Sbjct: 348 DALQAVANKAIERKT-----GARGLRSIIEETMMDIMFEIPSREEVTKVRITKDAVEGKD 402

Query: 424 GDFPS 428
                
Sbjct: 403 KPILE 407


>gi|157363410|ref|YP_001470177.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           lettingae TMO]
 gi|157314014|gb|ABV33113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           lettingae TMO]
          Length = 404

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 171/417 (41%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI +ELD+Y+IGQ+ AKR +++A+ N ++R    +D  D E+   NI+L+GPTG GK
Sbjct: 55  KPAEIKAELDKYVIGQEKAKRVISVAVYNHYKRVFYESDNDDVEIEKSNIMLIGPTGSGK 114

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+R LA++   PF   + T  TE GYVG +VE +I  L++VA   V  ++   V    
Sbjct: 115 TLIARVLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEVAHFDVERTQYGIV---- 170

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 171 ----------------------------------YIDEID-KIARKSPNPSITRDVSGEG 195

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   V     +   +   Q+                  V   +I  +     
Sbjct: 196 VQQALLKIVEGTVANVPPQGGRKHPYQEFIK---------------VDTSNILFIVGGAF 240

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+E  K   +DS  G G   +  +R  L  +    V                      
Sbjct: 241 DGLEEIVKRRIQDSSMGFGADIKSKKRMRLGEILSHVVPDDLVQ---------------- 284

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GRFPV   L  L + D   IL + ++ ++ QYK+L + + I L+ T+D+
Sbjct: 285 ---YGMIPEFVGRFPVIATLDDLTEEDLVRILNEPKNAIVKQYKKLFQLDNIELEITKDA 341

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+ V E V+ D+ F     +  + VV+  E V   
Sbjct: 342 LYAIARKALTKGT-----GARALKGVFEEVMIDVMFEIPSTKNVEKVVVTRESVEGK 393


>gi|300173595|ref|YP_003772761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887974|emb|CBL91942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 418

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/415 (24%), Positives = 168/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ DAK+ +A+A+ N ++R           EL   NI L+GPTG G
Sbjct: 67  TPHEIVAELNDYVIGQDDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 127 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSANFDI----------- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               A+  I+                            EID ++A  S ++S      G 
Sbjct: 176 --DAAQHGII-------------------------YVDEID-KIAKKSENVSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   +     +   +   Q+            LI +DT    +I  +    
Sbjct: 208 GVQQALLKMLEGTIASVPPQGGRKHPQQE------------LIQVDT---TNILFIVGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +D    I  R     IG   +     +    E      +                  
Sbjct: 253 FAGIDTI--IKERLGERVIGFGSDANDNAIALESENILEHVQ----------------PE 294

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + ++L+F  D
Sbjct: 295 DMTKFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTALLGLDDVVLEFQPD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++A+A++A+  ++     GAR L++++E  ++D+ +      +   V+I    V
Sbjct: 355 ALEAMAELAIKRHT-----GARGLRSIIELTMKDVMYDIPSRDDVSKVIITKASV 404


>gi|165976698|ref|YP_001652291.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876799|gb|ABY69847.1| ATP-dependent Clp protease, ATP-binding subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 378

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 169/424 (39%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P EI + LD Y+IGQ+ AK+ +++A+ N ++R +            EL   NILL+GPT
Sbjct: 25  TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKRLRNALSGHKETNGVELGKSNILLIGPT 84

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+        ++ R  V
Sbjct: 85  GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCDFDAEQAERGIV 144

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++   S   S     
Sbjct: 145 --------------------------------------FIDEID-KITRKSESPSITRDV 165

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +  P          +D   +       + 
Sbjct: 166 SGEGVQQALLKLIEGTVANINPQGSRKHPKGETIP----------VDTSKI-------LF 208

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DKI     +   GIG   E     L    E   ++  +  +  + ++   
Sbjct: 209 ICGGAFAG-LDKIVEARSNKQGGIGFGAE-----LKKDKEREDLTELFKQVEPEDLVKF- 261

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ L++     ILT+ ++ +I QY+ L + EG+ L
Sbjct: 262 ----------GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVEL 311

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS----DLQEKTVVIDA 416
            FT++++ A+A  +++  +     GAR L++++E +L D  ++      +   K V +  
Sbjct: 312 KFTKEALIAIAQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNVKKVTVGK 366

Query: 417 EYVR 420
             V 
Sbjct: 367 GCVE 370


>gi|319778292|ref|YP_004129205.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
 gi|317108316|gb|ADU91062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella
           equigenitalis MCE9]
          Length = 409

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 174/416 (41%), Gaps = 83/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +P EI   LD+Y+IGQ+  K+ +++A+ N ++R +   +     EL   NILL+GPTG G
Sbjct: 64  TPSEIKEFLDKYVIGQEGPKKQLSVAVYNHYKRIRHAGEKSNDVELSKSNILLIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ +A+    PF   + T  TE GYVG +VE II+ L+      + +++      Q
Sbjct: 124 KTLLAQTIAKQLDVPFAMADATTLTEAGYVGEDVEHIIQKLLQNCDFDIEKAQ------Q 177

Query: 126 ASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           A I  +E  +D +  K+   S TR+V  + ++   +  K I+  VA            G 
Sbjct: 178 AIIYIDE--IDKIARKSENPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ------GGR 227

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G   +    + ++           V   +  L +                       
Sbjct: 228 KHPGQEFIQVDTTNIL---------FIVGGAFEGLEKI---------------------- 256

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I  R   +GIG +     +    + E                  IA    
Sbjct: 257 ----------IQNRTEKSGIGFNASVSHKTEKGVGE-----------------LIAQVEP 289

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L+ L+      ILT  ++ L+ QY+ L   EG+ L+ T 
Sbjct: 290 EDIIKFGLIPELVGRLPVVTTLQELDVGALVQILTVPKNALVKQYQTLFAMEGVELEVTP 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++  +A+ A+   +     GAR L++++E VL  I F      + K V+++ E V
Sbjct: 350 EALKLIAEKAIKRKT-----GARGLRSIIESVLMPIMFEMPSRSDIKKVILNEEAV 400


>gi|121593622|ref|YP_985518.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax sp.
           JS42]
 gi|222110342|ref|YP_002552606.1| ATP-dependent protease ATP-binding subunit clpx [Acidovorax ebreus
           TPSY]
 gi|166214752|sp|A1W5B7|CLPX_ACISJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763845|sp|B9MG15|CLPX_ACIET RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120605702|gb|ABM41442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           sp. JS42]
 gi|221729786|gb|ACM32606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax
           ebreus TPSY]
          Length = 421

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 168/424 (39%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPAEIKTNLDHYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDEVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE I++ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      D   +   +I  +   
Sbjct: 220 ---------GTMASVPPQGGRKHPNQ------------------DFLQIDTTNILFICGG 252

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R   +GIG       +    L E           + +    I  G  
Sbjct: 253 AFAGLEKV--IENRTEASGIGFGAAVRSKKQRSLTE--------VFQDIEPEDLIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 301 -------LIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++ ++A  A+   +     GAR L++++E+ L    F   ++   + VV+D   +  + 
Sbjct: 354 AALKSIARKAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEATIEENK 408

Query: 424 GDFP 427
               
Sbjct: 409 APLL 412


>gi|302391291|ref|YP_003827111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium
           arabaticum DSM 5501]
 gi|302203368|gb|ADL12046.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium
           arabaticum DSM 5501]
          Length = 416

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 171/417 (41%), Gaps = 88/417 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P+EI   LD+Y+IGQ+ AK+ +++A+ N ++R      + D EL   NI L+GPTG GKT
Sbjct: 65  PQEIKDILDQYVIGQERAKKTLSVAVYNHYKRVNSGMQVDDVELEKSNICLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V             
Sbjct: 125 LLAQTLAKILDVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV------------- 171

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
             AE+ I+                            EID +VA  S + S      G   
Sbjct: 172 EKAEQGII-------------------------YIDEID-KVARKSENPSITRDVSGEG- 204

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               + +   K++         +  Q       ++          +   +I  +      
Sbjct: 205 ----VQQALLKILEGTEAS---VPPQGGRKHPHQEFI-------QIDTTNILFICGGAFN 250

Query: 248 FLDEFDK--IVARDSGNGIGVSREGVQR--DLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            LD+  K  I  +  G G  +  E  +   ++L  V+   V  KYG I            
Sbjct: 251 GLDDIIKSRIDEKVMGFGADIKSEKDEDIGEVLKHVKSQDV-LKYGLI------------ 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                     PE  GR PV   L  L +     ILT+  + L+ QY +  + +G+ L+FT
Sbjct: 298 ----------PEFVGRIPVLATLDQLGEDALVEILTEPRNALVKQYTKFFELDGVDLEFT 347

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           ED++ A+AD A+       D GAR L++++E  + +I +        +  +I  + V
Sbjct: 348 EDALHAIADKALE-----HDTGARGLRSIVEESILEIMYDLPSQNNIEKCIITEDVV 399


>gi|83765746|dbj|BAE55889.1| unnamed protein product [Aspergillus oryzae]
          Length = 609

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 187/489 (38%), Gaps = 104/489 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                 
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145

Query: 51  -------------------------------LMPKNILLVGPTGVGKTAISRRLARLAGA 79
                                          L   NILL+GP+GVGKT +++ LA++   
Sbjct: 146 PVEGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAKVLSV 205

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS------- 127
           PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+       
Sbjct: 206 PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGK 265

Query: 128 ----INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                  ++ +L  + G      T +V  K+ ++   +    +     ++S + N   P 
Sbjct: 266 DVGGEGVQQALLKIIEGT-----TVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPP 318

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G+    E+++      R   I       +  L +      + MD + R SI   + 
Sbjct: 319 SNGGGMSQKGEVYN-----VRTDNILFIFSGAFVGLHK------VVMDRISRGSIGFGQP 367

Query: 244 YGIVFLDEFDKIVARDSGNG-----IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                  +     +  + N       G   E + +  LP    +S  +  G    +   F
Sbjct: 368 VRTPSNSDERPGQSTTANNQPVPIVPGSEEEALYKKHLPFFTSASPESPDG----EPTYF 423

Query: 299 IASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
               A  +  P DL     +PE+ GR PV   L +L +     ILT+  ++L+ QY  L 
Sbjct: 424 ---NALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSLLAQYTTLF 480

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
              GI L FT  ++  +A  A  + +     GAR L+T ME +L D  +       K V+
Sbjct: 481 SLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAMYETPGSSVKFVL 535

Query: 414 IDAEYVRLH 422
           +        
Sbjct: 536 VTESVAARK 544


>gi|256824762|ref|YP_003148722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus
           sedentarius DSM 20547]
 gi|256688155|gb|ACV05957.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus
           sedentarius DSM 20547]
          Length = 422

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 168/427 (39%), Gaps = 84/427 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILL 58
           KL    +PREI + L+ Y++GQ +AKRA+A+A+ N ++R         E   +   NIL+
Sbjct: 57  KLEKVPTPREIHAFLETYVVGQDEAKRALAVAVYNHYKRVDAERSTDPEAPEVAKSNILM 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 117 IGPTGTGKTYLAQTLAKLLQVPFAIADATALTEAGYVGEDVENILVKLIQAADGDIARAE 176

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              +         + I          S TR+V  + ++   +   E  +           
Sbjct: 177 TGIIY-------IDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG--- 226

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                                                     ++          +   +I
Sbjct: 227 -------------------------------------RKHPHQEFV-------QIDTRNI 242

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +       LD+   + AR+   G+G                        S+  +    
Sbjct: 243 LFIVGGAFAGLDDI--VAAREGKGGLGFGA-------------------NLSVRREEGDL 281

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           +            L+PE  GR PV   +  L+      ILT   + L+ QY+ L + +G+
Sbjct: 282 LRQIRPEDLVNFGLIPEFIGRVPVVAAVSPLDADALVDILTGPRNALVRQYQHLFRLDGV 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAE 417
            L+FTED++ A+A+ A+   +     GAR L+ +ME VL+ + F    D + + VV+ AE
Sbjct: 342 ELEFTEDAVRAVAEQAMLRRT-----GARGLRAIMEEVLQPVMFDVPSDDRIERVVVTAE 396

Query: 418 YVRLHIG 424
            V  ++ 
Sbjct: 397 VVADNVN 403


>gi|288818081|ref|YP_003432429.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787481|dbj|BAI69228.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751683|gb|ADO45166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Hydrogenobacter thermophilus TK-6]
          Length = 411

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 169/422 (40%), Gaps = 84/422 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P +I S LD Y++GQ+ AKR +++A+ N ++R +           E+   NILL+GPTG
Sbjct: 60  KPEKIKSFLDEYVVGQERAKRILSVAVYNHYKRVKAKEMGLGFDDVEVEKSNILLIGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+L   PF   + T  TE GYVG +VE ++  L+      V+ ++   V 
Sbjct: 120 SGKTLLAKTLAKLLNVPFAIADATSLTEAGYVGEDVENVLTRLLQNCGYDVKLAQMGIV- 178

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                                                   EID     +  + S      
Sbjct: 179 -------------------------------------YIDEIDKIAKKSGINPSITRDVS 201

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  V    L  +   V     +   +                     + +  D+  ++  
Sbjct: 202 GEGVQQALLKIMEGTVANVPPQGGRKHP-----------------HQEFIQVDTTDILFI 244

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
            G  F+   D I  R   + IG                S V   +  +N   ++      
Sbjct: 245 CGGAFVGLEDIIKRRLGKSTIGFE--------------SQVKGAFKEMNVLELVE----- 285

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV   L  L + D   ILT+ +++L+ QYK+L + + + L+FT
Sbjct: 286 PDDLIHFGLIPEFIGRLPVIAVLDELTEEDLVRILTEPKNSLVKQYKKLFEMDNVDLEFT 345

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++++  +A  ++   +     GAR L+ +ME ++ D+ F    ++  K V+ID E VR  
Sbjct: 346 QEALIEIARESIKRKT-----GARGLRAIMEEIMTDVMFEIPSMKGVKKVIIDEEVVRNR 400

Query: 423 IG 424
           I 
Sbjct: 401 IK 402


>gi|293606139|ref|ZP_06688504.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292815594|gb|EFF74710.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 432

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 174/417 (41%), Gaps = 83/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  +   
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFIVG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K++  R   +GIG S        +       V   +  +  + ++       
Sbjct: 250 GAF-DGLEKVIRDRTEKSGIGFS------ASVRAKSERGVGELFSEVEPEDLIKF----- 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   
Sbjct: 298 ------GLIPELVGRLPVVATLDELDEAALVQILTEPKNALLKQFQKLFAMEGAELDLRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
            ++ A+A  A+   +     GAR L++++E+ L D  +        K VV+D   + 
Sbjct: 352 AALKAIARKALKRKT-----GARGLRSIIEQTLLDTMYELPSQGNVKRVVVDENAIE 403


>gi|255573808|ref|XP_002527823.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223532747|gb|EEF34526.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 603

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 171/436 (39%), Gaps = 94/436 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+EI   LD ++IGQ  AK+ +A+A+ N ++R    +  ++                  
Sbjct: 183 TPKEICKGLDEFVIGQDRAKKVLAVAVYNHYKRIYHGSKRKESGADMGYTDSQNDDNEIV 242

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 243 ELDKSNVLLMGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILYKLLAA 302

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID-IE 168
           +   V  ++R  +                                         E+D I 
Sbjct: 303 SEFNVEAAQRGII--------------------------------------YIDEVDKIT 324

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               SS+I       G    +L + E     +    K   +           +D      
Sbjct: 325 KKAESSNIGRDVSGEGVQQALLKMLEGTIVNVPVPDKGPRKHPRGDPIQIDTKD------ 378

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                      ++   G  F+D    I  R     IG             +  + V++  
Sbjct: 379 -----------ILFICGGAFVDLEKTISERRQDASIGFGAPVRTNMRTGRMIDAVVASSL 427

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
              + +    +A G         L+PE  GRFP+ V L +LN+     +L + ++ L  Q
Sbjct: 428 LE-SVESGDLVAYG---------LIPEFVGRFPILVSLSALNEDQLVQVLVEPKNALGKQ 477

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK++     + L FT++++  +A  A+  N+     GAR L+ ++E +L +  +   + +
Sbjct: 478 YKKMFSMNDVKLHFTDEALRLIAKKAMAKNT-----GARGLRAILESILTEAMYEIPENK 532

Query: 409 EKT-----VVIDAEYV 419
             +     V++D E V
Sbjct: 533 TGSNCISAVLVDEEAV 548


>gi|297792705|ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310072|gb|EFH40496.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 572

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 179/437 (40%), Gaps = 96/437 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R    +                  D   
Sbjct: 153 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAVKPADDDMV 212

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 213 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 272

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D                             +++ 
Sbjct: 273 ADYNVAAAQQGIVY-----------ID-----------------------------EVDK 292

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 293 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 337

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            D +  D+  ++   G  F+D  +K I  R   + IG             V  ++V++  
Sbjct: 338 -DNIQIDTKDILFICGGAFVD-IEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASN- 394

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                +    IA G         L+PE  GRFPV V L +L ++    +LT+ ++ L  Q
Sbjct: 395 LMETVESSDLIAYG---------LIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQ 445

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK++ +   + L FTE ++  +A  A+  N+     GAR L++++E +L D  +   D  
Sbjct: 446 YKKMYQMNSVKLHFTESALRLIARKAITKNT-----GARGLRSLLESILMDSMYEIPDES 500

Query: 409 -----EKTVVIDAEYVR 420
                 + VV+D E V 
Sbjct: 501 TGSDMIEAVVVDEEAVE 517


>gi|255066288|ref|ZP_05318143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
 gi|255049498|gb|EET44962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           sicca ATCC 29256]
          Length = 422

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 185/435 (42%), Gaps = 89/435 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 65  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 226

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 227 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +        +G F +
Sbjct: 249 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENAD-------ITGLFEI 287

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+
Sbjct: 288 VEPEDLIKFGLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELE 347

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           F E+++ ++A  A+   +     GAR L++++ER L D  +   DL+  T VVI    + 
Sbjct: 348 FEEEALRSIARQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVVIGKNVIE 402

Query: 421 LHIGDFPSETDMYHF 435
                     D   +
Sbjct: 403 KGEQPKLLREDGSEY 417


>gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
 gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           fimi ATCC 484]
          Length = 425

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 175/423 (41%), Gaps = 86/423 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P+EI   L++YIIGQ+ AKRA+++++ N ++R Q       +D   E+   NILLVGPT
Sbjct: 63  KPKEIFDFLEQYIIGQESAKRALSVSVYNHYKRVQAGELGRGSDDHVEIAKSNILLVGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V++      
Sbjct: 123 GTGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKK------ 176

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                  AE+ I+                            EID ++A  S + S     
Sbjct: 177 -------AEQGII-------------------------YIDEID-KIARKSENPSITRDV 203

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +         +   +   Q+                  +   ++  + 
Sbjct: 204 SGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFI---------------QIDTTNVLFIV 248

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I AR     +G           PL+E             D     +  
Sbjct: 249 AGAFSGLDDI--IAARARKRVVGFGA--------PLLES-----------HDEGDLFSEV 287

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                +   L+PE  GR PV   +  L++S    ILT+  + L+ QY+ + + +G+ L+F
Sbjct: 288 RPEDLQKYGLIPEFIGRLPVVAAVSRLDQSALVRILTEPRNALVKQYQRMFQIDGVELEF 347

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
            ++++ A+AD A+   +     GAR L+ +ME VL+ + F      +   VVI  + V  
Sbjct: 348 EDEAVAAIADQALLRGT-----GARGLRAIMEEVLQQVMFEVPSRDDVARVVITQDVVLE 402

Query: 422 HIG 424
           ++ 
Sbjct: 403 NVN 405


>gi|306833689|ref|ZP_07466816.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis
           ATCC 700338]
 gi|304424459|gb|EFM27598.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis
           ATCC 700338]
          Length = 409

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 166/425 (39%), Gaps = 84/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E+++ LD Y++GQ  AKRA+A+A+ N ++R        +E   L   NIL++GPTG 
Sbjct: 63  KPKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 183 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 224

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 225 ------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIGFGQNN 272

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE                +E +  D+                             
Sbjct: 273 RK--IDE-----------NASYMQEIISEDIQKF-------------------------- 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+ L+F +
Sbjct: 294 ------GLIPEFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDK 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++ A+A+ A+   +     GAR L++++E  + DI F     +E T V +    V    
Sbjct: 348 DALQAIANKAIERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKVRVTKAAVEGKD 402

Query: 424 GDFPS 428
                
Sbjct: 403 KPILE 407


>gi|224535962|ref|ZP_03676501.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522417|gb|EEF91522.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 415

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 175/426 (41%), Gaps = 80/426 (18%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q       E+   NI++V
Sbjct: 60  LNLRELPKPLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDGGDDVEIEKSNIIMV 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ +
Sbjct: 120 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I          S TR+V  + ++ G +   E           + N 
Sbjct: 180 GIV-------FIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLE---------GSVVNV 223

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
              GG         +   + M     K I       +  + +                  
Sbjct: 224 PPQGG--------RKHPDQKMIPVNTKNILFICGGAFDGIEK------------------ 257

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                         KI  R + + +G S           V  ++V      I+  ++  +
Sbjct: 258 --------------KIAQRLNTHVVGYSA----------VRNTAV------IDKSNM--M 285

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A    +   L+PEI GR PV  +L  L+++  R ILT+ ++++I QY +L + + + 
Sbjct: 286 QYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDNVE 345

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F     + + D AV        +GAR L++++E ++ D  F      +    +  +Y 
Sbjct: 346 LTFEATVFEYIVDKAVEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDHFEVTLDYA 400

Query: 420 RLHIGD 425
           +  +  
Sbjct: 401 KHQLEK 406


>gi|224132768|ref|XP_002321405.1| predicted protein [Populus trichocarpa]
 gi|222868401|gb|EEF05532.1| predicted protein [Populus trichocarpa]
          Length = 403

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 176/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R  L +                  D   
Sbjct: 12  TPKEICKALDNFVIGQRRAKKVLSVAVYNHYKRIYLESVKKWSNTDSGNEKSDIMDDDGV 71

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+  YVG +VE I+  L+  
Sbjct: 72  ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLTA 131

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  +            +D                             +I+ 
Sbjct: 132 ADYNVAAAQQGIIY-----------ID-----------------------------EIDK 151

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 152 ITKKAESVNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 196

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG             V  ++V     
Sbjct: 197 -DNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSTAV----- 250

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L  A  +  VS    L+PE  GRFP+ V L +L +     +LT+ ++ L  QY
Sbjct: 251 ---TSSLLETAESSDLVS--YGLIPEFVGRFPILVSLAALTEDQLVQVLTEPKNALGKQY 305

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L +   + L  TE+++ ++A  A+  N+     GAR L++++E +L D  +   D++ 
Sbjct: 306 KKLFQMNDVKLHVTENALRSIARKAITKNT-----GARALRSILENILMDSMYEIPDVRT 360

Query: 410 KTVVIDAEYVRL 421
              +IDA  V  
Sbjct: 361 GDDIIDAVVVDE 372


>gi|238855232|ref|ZP_04645551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 269-3]
 gi|260664593|ref|ZP_05865445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932474|ref|ZP_06337899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|313471945|ref|ZP_07812437.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 1153]
 gi|238832124|gb|EEQ24442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 269-3]
 gi|239529127|gb|EEQ68128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 1153]
 gi|260561658|gb|EEX27630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303423|gb|EFA95600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
          Length = 427

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 175/437 (40%), Gaps = 80/437 (18%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILL 58
           +K T +   P EI ++LD Y++GQ  AK+ +++A+ N ++R  Q+  D   EL   NI L
Sbjct: 56  LKETKDLPKPVEIKNQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIAL 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++
Sbjct: 116 IGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQ 175

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +   E  I           
Sbjct: 176 RGIIY-------IDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGG--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                                         +   Q+                  +   +I
Sbjct: 226 -----------------------------RKHPQQELIK---------------IDTKNI 241

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
             +       ++   K  +R     IG   E                +K+  ++ D   +
Sbjct: 242 LFIVGGAFDGIESIVK--SRLGKKTIGFGAE----------------SKFDDVDQDADSW 283

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   L  L K+D   ILT+ ++ L+ QY++L   + +
Sbjct: 284 NKYLTTGDLVKFGLIPEFIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFSIDKV 343

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L F++ +++A+++ A+  N     +GAR L+T++E  + D  ++    Q+   V I  +
Sbjct: 344 DLHFSDGALEAISEQALERN-----MGARGLRTIIENAMMDTMYTIPSEQDVAKVEITRD 398

Query: 418 YVRLHIGDFPSETDMYH 434
            +  H     +  ++  
Sbjct: 399 VITKHASPRITRKEVNK 415


>gi|311113764|ref|YP_003984986.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945258|gb|ADP41552.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 451

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 174/427 (40%), Gaps = 93/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +PREI S L  Y+IGQ  AKR +A+A+ N ++R                 A    +L   
Sbjct: 76  TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIHDLNNPVLHSRTLSATAGESVDLGKS 135

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L++ A   V
Sbjct: 136 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAADGDV 195

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            +++   +                                         EID ++A    
Sbjct: 196 EKAQHGII--------------------------------------YIDEID-KIARKGG 216

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +  +             L ++    + +   +  R      +  L  + S+ L     + 
Sbjct: 217 ENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHP--AHTNLEIETSNILF----IV 270

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +   +E          D+I+AR     IG   E                    + +TD
Sbjct: 271 AGAFDGLE----------DRILARTDRTSIGFGAE-----------------LTAAPDTD 303

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
             L  +           ++PE+ GR PV   LK L   +   ILT  ++ L+ QYK L  
Sbjct: 304 QTL--SQIMPEDLTHYGIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFA 361

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VV 413
            +G+ L F +D++ A+A++A    +     GAR L+++ME +L+ I F   D Q+ T VV
Sbjct: 362 LDGVELIFEDDALHAVAELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVV 416

Query: 414 IDAEYVR 420
           I  + VR
Sbjct: 417 ITEDTVR 423


>gi|33864599|ref|NP_896158.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           WH 8102]
 gi|46576440|sp|Q7UA37|CLPX_SYNPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33632122|emb|CAE06578.1| Putative ATP-dependent protease ATP-binding subunit ClpX
           [Synechococcus sp. WH 8102]
          Length = 449

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 163/433 (37%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P++I S LD  ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPQQIKSFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGETEQTATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 268

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LDE   +  R   N IG              +G   S     + T  +L   
Sbjct: 269 ICGGAFVGLDEV--VQKRMGRNAIGFMP----------TDGRGRSRANRELQTTQVL--- 313

Query: 301 SGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P D     L+PE  GR PV   L+ L++S    ILT+    L+ Q++ L+  
Sbjct: 314 ----RHLEPDDLVKYGLIPEFIGRMPVSAVLEPLDESALESILTEPRDALVKQFRTLLSM 369

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVI 414
           + + L F   +I A+A  A    +     GAR L+ ++E ++ D+ +        K   I
Sbjct: 370 DNVQLQFEPAAIHAIAQEAHRRKT-----GARALRGIVEELMLDLMYDLPSQSTVKEFTI 424

Query: 415 DAEYVRLHIGDFP 427
               V  H G   
Sbjct: 425 TQAMVEQHTGGKV 437


>gi|328676004|gb|AEB28679.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella
           cf. novicida 3523]
          Length = 417

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/419 (24%), Positives = 177/419 (42%), Gaps = 82/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R       D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNPTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +   E                     
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKLIE--------------------- 209

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                      S V   G +K                      + D +  D+  ++   G
Sbjct: 210 --------GTVSSVPPKGGRKHP--------------------NQDMIQVDTTNILFICG 241

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F    +K+V  R     IG + + +Q+                S++TD ++       
Sbjct: 242 GAFAG-IEKVVKHRMDKVSIGFNADVIQQK--------------NSLDTDKLMQKIES-- 284

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++FT+
Sbjct: 285 EDLTRFGLIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDDVSIEFTD 344

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            +   +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +   
Sbjct: 345 QAFVEIAKKAIAKKT-----GARGLRTILENVLLEVMFHVPSSEDIEKVIINDKVILEQ 398


>gi|87123285|ref|ZP_01079136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
 gi|86169005|gb|EAQ70261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. RS9917]
          Length = 450

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 164/433 (37%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI S LDR ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+G
Sbjct: 83  KPQEIKSFLDRQVVGQEAAKKVLSVAVYNHYKRLAWQGDGNGETEQTATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKSDMDVDQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 268

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG                  +       +  +    A
Sbjct: 269 ICGGAFVGLD--DVVQKRLGRNSIGF-----------------MPDAGRGRHRANRDLQA 309

Query: 301 SGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +       P DL     +PE  GR PV   L+ L++     ILT+    L+ Q++ L+  
Sbjct: 310 AQVLRHLEPDDLVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSM 369

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + LDF   +++A+A  A    +     GAR L+ ++E ++ D+ +     +  KT  +
Sbjct: 370 DNVQLDFEAGAVEAIAHEAHRRKT-----GARALRGIVEELMLDLMYELPSRKNVKTFTV 424

Query: 415 DAEYVRLHIGDFP 427
               V  H G   
Sbjct: 425 TRAMVEEHTGGKV 437


>gi|325847170|ref|ZP_08169969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480950|gb|EGC83996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 399

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 85/418 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            PREI   LD+Y+I Q+ AK+ +++++ N ++R     D  D  EL   NIL++GPTG G
Sbjct: 58  KPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE II  LV  A   +  ++   +   
Sbjct: 118 KTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAQTGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA+              
Sbjct: 176 -----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVANVPPQGG-------- 220

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                   +    + +  D+  ++   G
Sbjct: 221 ---------------------------------------RKHPSQEYIQVDTTNILFIVG 241

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F    D I  R +   IG   +  +   + L +          + T+ +L        
Sbjct: 242 GAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLAD----------VRTEDLL-------- 283

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L+ L+      IL + +++L+ QY++L + +G+ L F ++
Sbjct: 284 ---KYGLIPEFIGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDE 340

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++  +A  A    +     GAR L+T++E +L D+ +        K V++    +   
Sbjct: 341 AVREIAKKAFKQET-----GARGLRTILEDLLLDVMYEIPSKDHIKEVIVSKGAIEDK 393


>gi|239616657|ref|YP_002939979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505488|gb|ACR78975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga
           olearia TBF 19.5.1]
          Length = 403

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 176/416 (42%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  + +D   E+   NI+L+GPTG GKT
Sbjct: 56  KPAEIKAILDQYVIGQEKAKKTISVAVYNHYKRVFIGSD-DIEVEKSNIMLIGPTGSGKT 114

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+R LA++   PF   + T  TE GYVG +VE +I  L+  A   V        R Q  
Sbjct: 115 LIARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLQAANFDVE-------RAQYG 167

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I   + I       +  S TR+V  + ++   +   E  I         +N    GG   
Sbjct: 168 IIYIDEIDKITRKTSNPSITRDVSGEGVQQALLKIVEGTI---------ANVPPQGG--- 215

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  +   +I  +      
Sbjct: 216 --------------------RKHPYQEFIK---------------IDTTNILFIVGGAFD 240

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LDE  K     S  G G   +G     L  +                   +A       
Sbjct: 241 GLDEIIKERILTSTMGFGAEVKGKDSYRLGEI-------------------LAQVGPDDL 281

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               ++PE  GRFPV   L  L+  D + I+ + ++ +I QY++L++ EGI L FTED++
Sbjct: 282 IHYGMIPEFVGRFPVVATLDDLSVEDLKRIMLEPKNAVIKQYQKLLEIEGITLQFTEDAL 341

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+A  A+   +     GAR +++V+E V+ DI F A  ++  + +++  + +   
Sbjct: 342 TAIAKEALKRGT-----GARAIKSVIESVMLDIMFEAPSMENVEKIIMTKDVIEGR 392


>gi|310287697|ref|YP_003938955.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum S17]
 gi|309251633|gb|ADO53381.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum S17]
          Length = 437

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 182/441 (41%), Gaps = 111/441 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------------PA 45
            P EI + LDRY+IGQ  AKR +++A+ N ++R  +                        
Sbjct: 64  KPAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDP 123

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
               E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ 
Sbjct: 124 LADVEVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQR 183

Query: 106 LVDVAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
           L+  A   V  ++      DE+ + A  + E            TS TR+V  + ++   +
Sbjct: 184 LISAADGDVERAQHGIIYIDEIDKIARKSGEN-----------TSITRDVSGEGVQQALL 232

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              E                                + V   G +K              
Sbjct: 233 KILE-----------------------------GTIASVPVEGTRKHR------------ 251

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
                   D DTV  D+  ++   G  F+   D +  R   +  G        ++ P   
Sbjct: 252 --------DQDTVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKP--- 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                     ++ D +               LLPE  GR PV   L  L ++D   ILT+
Sbjct: 301 ----EELLEQVSADDLAEF-----------GLLPEFIGRLPVVSVLDELTEADLARILTE 345

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+++   +G+ L FTE +++A+A  A+   +     GAR L++++E+ LE+ 
Sbjct: 346 PKNALVKQYRKMFAVDGVDLAFTEQAVNAIASTAITRGT-----GARGLRSIIEKTLEET 400

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    + + + V++DA  VR
Sbjct: 401 MFELPSMDDVQQVIVDAASVR 421


>gi|121605847|ref|YP_983176.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
 gi|166214799|sp|A1VRH7|CLPX_POLNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120594816|gb|ABM38255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           naphthalenivorans CJ2]
          Length = 421

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 166/419 (39%), Gaps = 82/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKESAKKDDVELTKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  +++  V  
Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVDRAQQGIV-- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                                  EID +++  S + S      G
Sbjct: 185 ------------------------------------YIDEID-KISRKSDNPSITRDVSG 207

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +   +     +   +                   + D +  D+  ++   
Sbjct: 208 EGVQQALLKLMEGTMASVPPQGGRKHP-----------------NQDFLQVDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG       +    L E           + +    I  G  
Sbjct: 251 GGAFSGLEKVIENRTEASGIGFGAAVKSKKARSLTEA--------FKDVEPEDLIKFG-- 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L+  EG+ L+   
Sbjct: 301 -------LIPELVGRMPVIATLAELSEDALVQILTEPKNAVVKQFSKLLAMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
            ++ A+A  A+   +     GAR L++++E+ L D  F          VV+D   +  +
Sbjct: 354 SALKAIARKALARKT-----GARGLRSILEQSLIDTMFDLPTTSNVAKVVVDESTIEEN 407


>gi|195978196|ref|YP_002123440.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|238689818|sp|B4U360|CLPX_STREM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|195974901|gb|ACG62427.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 409

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 170/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIIAEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN  D   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     +E T V I  E 
Sbjct: 343 LEFEKSALEAIAGRAIERKT-----GARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGQSKPILE 407


>gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 417

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 180/434 (41%), Gaps = 92/434 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  ELD+Y+IGQ  AKR +++A+ N ++R  Q+  D   EL   NI L+GPTG GK
Sbjct: 63  KPMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQILARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGII---- 178

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID +++  S ++S      G  
Sbjct: 179 ----------------------------------YIDEID-KISKKSENVSITRDVSGEG 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+            +I MDT    +I  +     
Sbjct: 204 VQQALLKILEGTIASIPPQGGRKHPQQE------------MIRMDT---TNILFIVGGAF 248

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH-ILFIASGAFH 305
             ++E  K   R     IG   E                 + G ++ D+   F+ +G   
Sbjct: 249 DGIEEIVK--NRLGKKTIGFGAE----------------QESGKVDDDNWNRFLTTGDL- 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L+ +D   ILT+ ++ LI QY++L+  +G+ L+F   
Sbjct: 290 --VKFGLIPEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPA 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE------- 417
           ++  +AD+A+        +GAR L+T++E  + DI +      +   V+I  E       
Sbjct: 348 AVKQIADLAIERK-----MGARGLRTIIENAMMDIMYRTPSESDISKVIITPETITGMGE 402

Query: 418 --YVRLHIGDFPSE 429
              VR  + +   +
Sbjct: 403 PKVVRRELEEVTDD 416


>gi|302143904|emb|CBI23009.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 179/439 (40%), Gaps = 92/439 (20%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------- 45
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R    +                
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218

Query: 46  --DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
             +   EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+  YVG +VE I+
Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESIL 278

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             L+ VA   V  +++  V                                         
Sbjct: 279 YKLLMVADYNVAAAQQGIV--------------------------------------YID 300

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E+D ++   +  ++      G  V    L  L   V+    K   +           +D 
Sbjct: 301 EVD-KITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKD- 358

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
                           ++   G  F+D    I  R   + IG       R  +     + 
Sbjct: 359 ----------------ILFICGGAFIDLEKTISERRQDSSIGFGAP--VRANMRTGGPTD 400

Query: 284 VSTKYGSINT-DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            +     + T +    I+ G         L+PE  GRFP+ V L +L ++    +LT+ +
Sbjct: 401 AAVASSLLETVESSDLISYG---------LIPEFVGRFPILVSLSALTENQLVEVLTEPK 451

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L  QYK++ +  G+ L FT++++  ++  A++ N+     GAR L++++E +L +  +
Sbjct: 452 NALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNT-----GARGLRSILENILMNAMY 506

Query: 403 SASDLQEKTVVIDAEYVRL 421
              D++    +IDA  V  
Sbjct: 507 EIPDVRTGNDIIDAVVVDD 525


>gi|270339923|ref|ZP_06006468.2| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           bergensis DSM 17361]
 gi|270333281|gb|EFA44067.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella
           bergensis DSM 17361]
          Length = 418

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 173/419 (41%), Gaps = 80/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P+EI + LD YIIGQ +AKR +A+++ N ++R Q P D    E+   NI++VG TG GK
Sbjct: 70  KPKEIKAYLDEYIIGQDEAKRYMAVSVYNHYKRLQQPTDEDGVEIEKSNIIMVGSTGTGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+L   PF  V+ T FTE GYVG +VE I+  L+ VA   V  + R  V    
Sbjct: 130 TLLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERGIV---- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 186 ----------------------------------FIDEID-KIARKSDNPSITRDVSGEG 210

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    K   +                   D D +H ++  ++   G 
Sbjct: 211 VQQGLLKLLEGTVVNVPPKGGRKHP-----------------DQDYIHVNTKNILFICGG 253

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F     KI  R + + +G +     R +                  D    +       
Sbjct: 254 AFDGIERKIAQRLNTHVVGYNSVQNMRSI------------------DKGDLMKYILPQD 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE+ GR PV   L  L++   R IL + ++++  Q+ +L   + I L F +D+
Sbjct: 296 LKSFGLIPELIGRVPVLTFLNPLDRKALRRILVEPKNSITKQFVKLFAMDNITLTFADDA 355

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +D + D AV        +GAR L++++E V+ D  + A   + +   +  +Y +  +  
Sbjct: 356 LDFIVDKAVEYK-----LGARGLRSIVEAVIMDAMYDAPSRRIRKFEVTLDYAKAQLDK 409


>gi|94988378|ref|YP_596479.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS9429]
 gi|94992260|ref|YP_600359.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes MGAS2096]
 gi|166215210|sp|Q1JC93|CLPX_STRPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215211|sp|Q1JM77|CLPX_STRPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94541886|gb|ABF31935.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
           pyogenes MGAS9429]
 gi|94545768|gb|ABF35815.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Streptococcus pyogenes MGAS2096]
          Length = 409

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 168/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ L  SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LEFDKAALEAIATKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|325570035|ref|ZP_08145960.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156863|gb|EGC69034.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 414

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 173/421 (41%), Gaps = 82/421 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           + T    P+E+++ L+ Y+IGQ  AKR +A+A+ N ++R  +     D EL   NI L+G
Sbjct: 57  EFTEVPKPQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V      
Sbjct: 117 PTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAADYNV------ 170

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                    AE+ I+                            EID ++A  S ++S   
Sbjct: 171 -------EMAEKGII-------------------------YIDEID-KIARKSENVSITR 197

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L         +   +   Q+               M  +   +I  
Sbjct: 198 DVSGEGVQQALLKILEGTTASVPPQGGRKHPHQE---------------MIQIDTTNILF 242

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +        D  + IV    G        G   +   L EG SV  +   I  D + F  
Sbjct: 243 IVGGAF---DGIETIVKNRLGEKTI----GFGTNNKRLEEGESVMQQI--IPEDLLKF-- 291

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY++LM  +   L
Sbjct: 292 ----------GLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTEL 341

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +F  +++ A+A  A+  N+     GAR L++++E ++ ++ F+   D   + V I  E  
Sbjct: 342 EFEPEALRAIAAQAIERNT-----GARGLRSIIENIMMEVMFNVPSDESIQKVTITEEAA 396

Query: 420 R 420
           +
Sbjct: 397 K 397


>gi|271965030|ref|YP_003339226.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270508205|gb|ACZ86483.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 431

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 173/427 (40%), Gaps = 88/427 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILL 58
            PREI   L++Y++GQ+ AK+ +++A+ N ++R +  A             EL   NILL
Sbjct: 63  KPREIYEFLEQYVVGQESAKKTLSVAVYNHYKRIRPGAAGNGRPPAEKEPVELGKSNILL 122

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 123 IGPTGCGKTYLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLLQAADYDVKKAE 182

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              V         + I          S TR+V  + ++   +   E  +    +      
Sbjct: 183 TGIVY-------IDEIDKVARKGENPSITRDVSGEGVQQALLKILEGTV---ASVPPQGG 232

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
              P    + I   + LF               V   +  L +           + + + 
Sbjct: 233 RKHPHQDFIQIDTGNVLF--------------IVGGAFAGLEQI----------IEQRAG 268

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           +    +G         I AR+         E +  DLL                      
Sbjct: 269 RRGAGFGAA-------IPAREEQEKQDAFAEVMPEDLLKF-------------------- 301

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE+ GR PV    + L+++    ILT+  + LI QY++L + +G+
Sbjct: 302 ------------GLIPELVGRLPVLSTFQPLDRTALVRILTEPRNALIKQYQKLFEIDGV 349

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L+F E ++ A+A+ A+   +     GAR  + V+E VL ++ +      +   VV+  +
Sbjct: 350 ELEFAEGAVGAIAEQALLRRT-----GARATRAVLEEVLLNVMYEVPSRDDVARVVVSRD 404

Query: 418 YVRLHIG 424
            V  ++ 
Sbjct: 405 TVLDNVN 411


>gi|225868471|ref|YP_002744419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
 gi|259491269|sp|C0MEW5|CLPX_STRS7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225701747|emb|CAW99121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. zooepidemicus]
          Length = 409

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 169/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIIAEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ LN  D   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     +E   V I  E 
Sbjct: 343 LEFEKGALEAIAGRAIERKT-----GARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGQSKPILE 407


>gi|28493446|ref|NP_787607.1| ATP-dependent protease ATP-binding subunit ClpX [Tropheryma
           whipplei str. Twist]
 gi|46576524|sp|Q83G50|CLPX_TROWT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28476487|gb|AAO44576.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei
           str. Twist]
          Length = 423

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/416 (23%), Positives = 172/416 (41%), Gaps = 86/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGV 64
            P EI + LD Y+IGQQ AKR +++A+ N ++R    +  ++   EL   NILL+GPTG 
Sbjct: 70  KPAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGC 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A   +        R 
Sbjct: 130 GKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDIT-------RA 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A I   + I        + S TR+V  + ++   +   E  +                 
Sbjct: 183 EAGIVCIDEIDKISRKADSPSITRDVSGEGVQQALLKILEGTV----------------- 225

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                             L   +     +  +++  +I  +   
Sbjct: 226 ------------------------------ASVPLQGGKKHTQYEQASINTRNILFIVAG 255

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               ++E   I +R   + +G   + +++                  +TD    I     
Sbjct: 256 AFSGIEEI--ISSRIGRSNMGFGSDLLRK------------------DTDVFDQIL---P 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              R   L+PE  GR P+   +  L+  D   +LT+ ++ L+ QYK L   +G+ L F  
Sbjct: 293 EDLRKFGLIPEFIGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDH 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           ++++A+ ++A+   +     GAR L++VME +L  I F        ++V I AE V
Sbjct: 353 EALEAIVELALKRKT-----GARALRSVMESILSPIMFDVPSRGDIESVRITAETV 403


>gi|218779309|ref|YP_002430627.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfatibacillum
           alkenivorans AK-01]
 gi|226706583|sp|B8FA63|CLPX_DESAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218760693|gb|ACL03159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfatibacillum alkenivorans AK-01]
          Length = 416

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/414 (24%), Positives = 166/414 (40%), Gaps = 80/414 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI + LD Y+I Q  AK+ +++A+ N ++R     D +D ++   N+LL+GPTG GK
Sbjct: 64  SPKEIKAMLDEYVIEQDHAKKVLSVAVYNHYKRLDTAFDSKDVDIQKSNVLLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 124 TLLAQTLARFLDVPFTIADATALTEAGYVGEDVENIILSLLQNADYDVERAKRGIVY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 181 --------ID-----------------------------EIDKIARKSDNPSITRDVSGE 203

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L ++      S   K  R   Q                 D V  D+  ++   G 
Sbjct: 204 GVQQALLKIVEGTTASVPPKGGRKHPQ----------------QDFVKVDTSNILFICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F    + I  R     +G            +   + +      + T     +  G    
Sbjct: 248 AFNGLAELIQRRQGEKVMGFGA--------KVQTKTDMKIGDLLVQTRPEDLLKFG---- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L +     ILT+ ++ L+ Q+++L + EG+ L FT+ +
Sbjct: 296 -----LIPEFVGRLPVIATLGELGEESLVRILTEPKNALVKQFQKLFEMEGVKLRFTDSA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+A  A++  S     GAR L+ ++E+ + DI +    ++  K  VI  E V
Sbjct: 351 LSAIAKGALDRKS-----GARGLRAIVEKAMLDIQYEIPSMENVKECVIGEEVV 399


>gi|56808899|ref|ZP_00366608.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pyogenes M49 591]
 gi|209559238|ref|YP_002285710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pyogenes NZ131]
 gi|238066660|sp|B5XL03|CLPX_STRPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209540439|gb|ACI61015.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           pyogenes NZ131]
          Length = 409

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 168/430 (39%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKVIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+                        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIISEDIQKF--------------------- 293

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L+ L  SD   ILT+  + L+ QY+ L+  +G+ 
Sbjct: 294 -----------GLIPEFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     ++ T V I    
Sbjct: 343 LEFDKAALEAIATKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGKSKPVLE 407


>gi|242064888|ref|XP_002453733.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor]
 gi|241933564|gb|EES06709.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor]
          Length = 624

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 101/449 (22%), Positives = 190/449 (42%), Gaps = 61/449 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+EI   LD+++IGQQ AK+ +++A+ N ++R    +  R                   
Sbjct: 143 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLTRRSAADCSESDSCTSDTDMV 202

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 203 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAF 262

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID-IE 168
           +      +       Q S +    ++D            +      + G +   E+D I 
Sbjct: 263 SYVHPLAAT----ASQTSSSVVYLVMDMGWEWDMAYEAADFDVAAAQQGIVYIDEVDKIT 318

Query: 169 VADTSSDISNFDIPGGASVGILNL---------SELFSKVMGSGRKKKIRMSVQKCYPEL 219
               S ++S      G    +L +          +     +  G +    +++   +   
Sbjct: 319 KKAESINLSRDVSGEGVQQALLKMLEGTLCLCCQDRLLVFLRKGPEGTQEVTISSVFT-- 376

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDE------FD-KIVARDSGNGIGVSREGVQ 272
              E ++   ++T+    ++M+E+  +   D        D  +  R   + IG   +   
Sbjct: 377 ---EFEKRKPVETIKH--MRMIEHEKLTVSDTAVMSCGIDNSMCLRRHDSSIGFRAQVRS 431

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332
                 V  + +++     + +    IA G         L+PE  GRFP+ V L SL++ 
Sbjct: 432 NMRSGGVINAEITSSLLE-SVESGDLIAYG---------LIPEFVGRFPILVSLSSLSED 481

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               +LT+ ++ L  QY +L +   + L FTE+++  +A  A+  N+     GAR L+++
Sbjct: 482 QLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAIAKNT-----GARGLRSI 536

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +E +L +  +   + +     IDA  V  
Sbjct: 537 LESILTEAMYEIPETRTGKDKIDAVVVDE 565


>gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
          Length = 416

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 178/421 (42%), Gaps = 91/421 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y++GQ DAK+ +++A+ N ++R +  A ++D  EL   NILL+GPTG GK
Sbjct: 64  PQEIKAALDDYVVGQDDAKKILSVAVYNHYKRIKYHALVKDDVELDKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  LV  A   +  + +  +    
Sbjct: 124 TLLAQTLARILKVPFAIADATTLTEAGYVGEDVENILVQLVQNADYNLETAAKGIIYV-- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        + S TR+V  + ++   +   E                      
Sbjct: 182 -----DEIDKISRKSDSPSITRDVSGEGVQQALLKIIE---------------------- 214

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + +   G +K  +                       +   +I  +     
Sbjct: 215 -------GTVANIPPKGGRKHPQQEFI------------------RLDTSNILFIVGGAF 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
           + LDE  K   + S  G G +    Q D                 NTD +L         
Sbjct: 250 IGLDEMVKQRVQGSSMGFGATMRRKQDD-----------------NTDSLL-------KQ 285

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE  GR  V   L  LN+ D   IL + ++ LI QY+++ + E + L 
Sbjct: 286 VHPMDLIRFGLIPEFTGRISVITSLTELNEDDLMRILQEPKNALIKQYQKMFELENVELK 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           FT++++ ALA  A+ L +     GAR L++VME ++ DI ++    ++ T  VI+   V 
Sbjct: 346 FTQNALKALAARAIKLET-----GARGLRSVMESIMLDIMYTLPSTKDVTECVINKAVVE 400

Query: 421 L 421
            
Sbjct: 401 E 401


>gi|298529125|ref|ZP_07016528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510561|gb|EFI34464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 417

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 110/424 (25%), Positives = 183/424 (43%), Gaps = 81/424 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P E+   LD Y++GQ+  K+ +A+A+ N ++R +     +D  EL   NILL+GPTG 
Sbjct: 63  LPPSELKKALDDYVVGQEKTKKLLAVAVYNHYKRVRYIKKQKDDVELDKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +          
Sbjct: 123 GKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLMQNADYDL---------- 172

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                A + I+                            EID ++A  S   S      G
Sbjct: 173 ---EAASKGII-------------------------YVDEID-KIARKSDSPSITRDVSG 203

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +         K   +   Q+             I MDT +     ++   
Sbjct: 204 EGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDTSN-----ILFIA 246

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F+   DKIV            E VQ+  +    G+ + +++G+  T + L   +   
Sbjct: 247 GGAFIG-MDKIVR-----------ERVQKGSMGF--GAELGSQFGA--TPNELISMAHPA 290

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L+ L + D   ILT+ ++ L+ QY+++ + + I L FT+
Sbjct: 291 DLIK-YGLIPEFVGRIPVVSSLEELTEDDLVRILTEPKNALVKQYQKMFELDDINLKFTQ 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+A  A+   +     GAR L+ VME ++ D+ ++   LQ  +  +I+ E V   I
Sbjct: 350 NALRAIAAKALERKT-----GARGLRNVMESIMMDVMYNLPSLQGVQECLINKEVVEKGI 404

Query: 424 GDFP 427
               
Sbjct: 405 DPLL 408


>gi|212696597|ref|ZP_03304725.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676328|gb|EEB35935.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 402

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 85/418 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            PREI   LD+Y+I Q+ AK+ +++++ N ++R     D  D  EL   NIL++GPTG G
Sbjct: 61  KPREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE II  LV  A   +  ++   +   
Sbjct: 121 KTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAQTGIIY-- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA+              
Sbjct: 179 -----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVANVPPQGG-------- 223

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                   +    + +  D+  ++   G
Sbjct: 224 ---------------------------------------RKHPSQEYIQVDTTNILFIVG 244

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F    D I  R +   IG   +  +   + L +          + T+ +L        
Sbjct: 245 GAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLAD----------VRTEDLL-------- 286

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L+ L+      IL + +++L+ QY++L + +G+ L F ++
Sbjct: 287 ---KYGLIPEFIGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDE 343

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++  +A  A    +     GAR L+T++E +L D+ +        K V++    +   
Sbjct: 344 AVREIAKKAFKQET-----GARGLRTILEDLLLDVMYEIPSKDHIKEVIVSKGAIEDK 396


>gi|302335571|ref|YP_003800778.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli
           DSM 7084]
 gi|301319411|gb|ADK67898.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli
           DSM 7084]
          Length = 431

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 112/431 (25%), Positives = 172/431 (39%), Gaps = 85/431 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------LRDELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR     D       R EL   NILL+GP
Sbjct: 72  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRIISGDDGTNADGERVELAKSNILLLGP 131

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  ++   
Sbjct: 132 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAADGDVERAQVGI 191

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V                                         EID ++A  + ++S    
Sbjct: 192 V--------------------------------------YIDEID-KIARKAENLSITRD 212

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L         +   +   Q+            LI +DT    +I  +
Sbjct: 213 VSGEGVQQALLKILEGTEASVPPQGGRKHPQQE------------LIHIDT---KNILFI 257

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                V LD+   +  R    GIG + E  +R                 +  +    +  
Sbjct: 258 CGGAFVGLDKI--VADRIGKKGIGFNAELAKR-----------------VEENQDELMGQ 298

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE  GR PV    K L + D   ILT  ++ ++ QY+ + + EG+ LD
Sbjct: 299 VMPQDLHKFGMIPEFIGRIPVITSTKELTEDDLVEILTKPKNAIVKQYRRMFEIEGVELD 358

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           F +D++  +A  A+   +     GAR L+ + E  LE+  F    DL    VV+  E V 
Sbjct: 359 FDDDALREVAAQAIARGT-----GARGLRAICESTLEETMFDLPSDLDITRVVVTKESVG 413

Query: 421 LHIGDFPSETD 431
             +       D
Sbjct: 414 GTVRPMVVRQD 424


>gi|300741665|ref|ZP_07071686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           dentocariosa M567]
 gi|300380850|gb|EFJ77412.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           dentocariosa M567]
          Length = 431

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 174/427 (40%), Gaps = 93/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +PREI S L  Y+IGQ  AKR +A+A+ N ++R                 A    +L   
Sbjct: 56  TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIYDLNNPVLHSRTLSATAGESVDLGKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L++ A   V
Sbjct: 116 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAADGDV 175

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            +++   +                                         EID ++A    
Sbjct: 176 EKAQHGII--------------------------------------YIDEID-KIARKGG 196

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +  +             L ++    + +   +  R      +  L  + S+ L     + 
Sbjct: 197 ENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHP--AHTNLEIETSNILF----IV 250

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +   +E          D+I+AR     IG   E                    + +TD
Sbjct: 251 AGAFDGLE----------DRILARTDRTSIGFGAE-----------------LTAAPDTD 283

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
             L  +           ++PE+ GR PV   LK L   +   ILT  ++ L+ QYK L  
Sbjct: 284 QTL--SQIMPEDLTHYGIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFA 341

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VV 413
            +G+ L F +D++ A+A++A    +     GAR L+++ME +L+ I F   D Q+ T VV
Sbjct: 342 LDGVELIFEDDALHAVAELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVV 396

Query: 414 IDAEYVR 420
           I  + VR
Sbjct: 397 ITEDTVR 403


>gi|224283327|ref|ZP_03646649.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313140479|ref|ZP_07802672.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132989|gb|EFR50606.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 437

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 182/441 (41%), Gaps = 111/441 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------------PA 45
            P EI + LDRY+IGQ  AKR +++A+ N ++R  +                        
Sbjct: 64  KPAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELRESAGQFDGKKQALGRRRRTDP 123

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
               E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ 
Sbjct: 124 LADVEVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQR 183

Query: 106 LVDVAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
           L+  A   V  ++      DE+ + A  + E            TS TR+V  + ++   +
Sbjct: 184 LISAADGDVERAQHGIIYIDEIDKIARKSGEN-----------TSITRDVSGEGVQQALL 232

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              E                                + V   G +K              
Sbjct: 233 KILE-----------------------------GTIASVPVEGTRKHR------------ 251

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
                   D DTV  D+  ++   G  F+   D +  R   +  G        ++ P   
Sbjct: 252 --------DQDTVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKP--- 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                     ++ D +               LLPE  GR PV   L  L ++D   ILT+
Sbjct: 301 ----EELLEQVSADDLAEF-----------GLLPEFIGRLPVVSVLDELTEADLARILTE 345

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+++   +G+ L FTE +++A+A  A+   +     GAR L++++E+ LE+ 
Sbjct: 346 PKNALVKQYRKMFAVDGVDLAFTEQAVNAIASTAITRGT-----GARGLRSIIEKTLEET 400

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    + + + V++DA  VR
Sbjct: 401 MFELPGMDDVQQVIVDAASVR 421


>gi|113955227|ref|YP_729302.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CC9311]
 gi|122945884|sp|Q0IE20|CLPX_SYNS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|113882578|gb|ABI47536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. CC9311]
          Length = 451

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/433 (24%), Positives = 160/433 (36%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI   LD  ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 84  KPQEIKGFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGEAAQTATRLHKSNILLIG 143

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 144 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQRG 203

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 204 II--------------------------------------YIDEID-KIARKSENPSITR 224

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 225 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 269

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG                  V       N       A
Sbjct: 270 ICGGAFVGLD--DVVQKRMGRNAIGF-----------------VPNDGRGRNRATRDIQA 310

Query: 301 SGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +       P D     L+PE  GR PV   L+ L++     ILT+    L+ Q+  L+  
Sbjct: 311 AQVLRHLEPDDLVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFSTLLSM 370

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           + + LDF   +++A+A  A    +     GAR L+ ++E ++ D+ +     Q  T   I
Sbjct: 371 DNVQLDFEAQAVEAIAKEAHRRKT-----GARALRGIVEELMLDLMYELPSDQNVTAFTI 425

Query: 415 DAEYVRLHIGDFP 427
               V  H G   
Sbjct: 426 TKAMVEEHTGGKV 438


>gi|293115723|ref|ZP_05792771.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
 gi|292808606|gb|EFF67811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio
           crossotus DSM 2876]
          Length = 468

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 165/424 (38%), Gaps = 81/424 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI ++LD Y++GQ+ AK+ +++A+ N ++R     D   E+   N+L++GPTG GKT 
Sbjct: 117 PHEIKAKLDEYVVGQEHAKKVMSVAVYNHYKRVATSNDQSVEIQKSNMLMIGPTGSGKTY 176

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA++   P    + T  TE GY+G ++E ++  L+  A N V ++ R  +      
Sbjct: 177 LVQTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAERGII------ 230

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +        TR                 D+        +          V 
Sbjct: 231 -----FIDEIDKIAKKKETRSR---------------DVSGESVQQGLLRILEGSNVDVP 270

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL     +   +    +      
Sbjct: 271 VGANSKNAMVPLTTINTKNILFICGGAFPDLADIIKERLNKQAAIGFTADLRDKYDNDPD 330

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           +   DK+   D  N                         +G I                 
Sbjct: 331 I--LDKVTMEDLRN-------------------------FGMI----------------- 346

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   LK L++     IL + ++ +I QY++L++ + + L F ++++ 
Sbjct: 347 -----PEFLGRLPVVFALKELDEDMLVRILKEPKNAIIKQYEKLLELDEVKLMFNDEALR 401

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+   +     GAR L++++E  + DI +    D    +V I  EY+    G   
Sbjct: 402 AIAAKAIEKKT-----GARALRSIIEEFMLDIMYEIPKDKNIGSVTITKEYIENTGGPQI 456

Query: 428 SETD 431
              D
Sbjct: 457 GMRD 460


>gi|28572441|ref|NP_789221.1| ATP-dependent protease ATP-binding subunit [Tropheryma whipplei
           TW08/27]
 gi|46576526|sp|Q83MI6|CLPX_TROW8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28410572|emb|CAD66959.1| ATP dependent Clp Protease ATP binding subunit [Tropheryma whipplei
           TW08/27]
          Length = 423

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 99/416 (23%), Positives = 172/416 (41%), Gaps = 86/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGV 64
            P EI + LD Y+IGQQ AKR +++A+ N ++R    +  ++   EL   NILL+GPTG 
Sbjct: 70  KPAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGC 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A   +        R 
Sbjct: 130 GKTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDIT-------RA 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +A I   + I        + S TR+V  +                               
Sbjct: 183 EAGIVCIDEIDKISRKADSPSITRDVSGE------------------------------- 211

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  + +   K++                  L   +     +  +++  +I  +   
Sbjct: 212 ------GVQQALLKILEGT----------AASVPLQGGKKHTQYEQASINTRNILFIVAG 255

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               ++E   I +R   + +G   + +++                  +TD    I     
Sbjct: 256 AFSGIEEI--ISSRIGRSNMGFGSDLLRK------------------DTDVFDQIL---P 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              R   L+PE  GR P+   +  L+  D   +LT+ ++ L+ QYK L   +G+ L F  
Sbjct: 293 EDLRKFGLIPEFIGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDH 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           ++++A+ ++A+   +     GAR L++VME +L  I F        ++V I AE V
Sbjct: 353 EALEAIVELALKRKT-----GARALRSVMESILSPIMFDVPSRGDIESVRITAETV 403


>gi|317139982|ref|XP_001817891.2| ATP-dependent Clp protease [Aspergillus oryzae RIB40]
          Length = 613

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 106/493 (21%), Positives = 187/493 (37%), Gaps = 108/493 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                 
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145

Query: 51  -----------------------------------LMPKNILLVGPTGVGKTAISRRLAR 75
                                              L   NILL+GP+GVGKT +++ LA+
Sbjct: 146 PVEDEFPGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAK 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS--- 127
           +   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+   
Sbjct: 206 VLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKV 265

Query: 128 --------INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                      ++ +L  + G      T +V  K+ ++   +    +     ++S + N 
Sbjct: 266 SHGKDVGGEGVQQALLKIIEGT-----TVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNS 318

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P     G+    E+++      R   I       +  L +      + MD + R SI 
Sbjct: 319 PYPPSNGGGMSQKGEVYN-----VRTDNILFIFSGAFVGLHK------VVMDRISRGSIG 367

Query: 240 MVENYGIVFLDEFDKIVARDSGNG-----IGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +        +     +  + N       G   E + +  LP    +S  +  G    +
Sbjct: 368 FGQPVRTPSNSDERPGQSTTANNQPVPIVPGSEEEALYKKHLPFFTSASPESPDG----E 423

Query: 295 HILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              F    A  +  P DL     +PE+ GR PV   L +L +     ILT+  ++L+ QY
Sbjct: 424 PTYF---NALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSLLAQY 480

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L    GI L FT  ++  +A  A  + +     GAR L+T ME +L D  +       
Sbjct: 481 TTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAMYETPGSSV 535

Query: 410 KTVVIDAEYVRLH 422
           K V++        
Sbjct: 536 KFVLVTESVAARK 548


>gi|221194753|ref|ZP_03567810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
 gi|221185657|gb|EEE18047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
          Length = 435

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 174/419 (41%), Gaps = 85/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------ADLRDELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR           D   E+   NILL+GP
Sbjct: 78  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPAEGDEDVEIAKSNILLLGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  ++   
Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAADGNVERAQVGI 197

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V                                         EID ++A  + ++S    
Sbjct: 198 V--------------------------------------YIDEID-KIARKAENLSITRD 218

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L             +   Q+            LI +DT    +I  +
Sbjct: 219 VSGEGVQQALLKILEGTEASVPPTGGRKHPQQE------------LIHIDT---TNILFI 263

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                V LD+   I  R    GIG                S V+ ++    +D I  +  
Sbjct: 264 CGGAFVGLDKI--IADRIGKKGIGF--------------NSHVAERFDQGESDLIAKVMP 307

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
              H      ++PE+ GR PV    + L + D   ILT+ ++ L+ QY+ + + EG+ L+
Sbjct: 308 QDLH---KFGMIPELLGRIPVITSTRELGEDDLVSILTEPKNALVKQYRRMFELEGVDLE 364

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           FT++++  ++  A+   +     GAR L+ + E  L++  F    DL    VV+  E V
Sbjct: 365 FTDEALREISRKALERGT-----GARGLRAICESTLQETMFDLPSDLDITRVVVTPESV 418


>gi|296110626|ref|YP_003621007.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832157|gb|ADG40038.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 416

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 167/415 (40%), Gaps = 80/415 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R           EL   NI L+GPTG G
Sbjct: 64  TPHEIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 124 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSANFDV----------- 172

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               A   I+                            EID ++A  S ++S      G 
Sbjct: 173 --EAASHGII-------------------------YVDEID-KIAKKSENVSITRDVSGE 204

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   +     +   +   Q+            LI +DT    +I  +    
Sbjct: 205 GVQQALLKMLEGTIASVPPQGGRKHPQQE------------LIQVDT---TNILFIVGGA 249

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              +D    I  R     IG   +          E      +                  
Sbjct: 250 FAGIDTI--IKERLGERVIGFGSDANDNAAALNSENILAHVQ----------------PE 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+   L  L   D   ILT+ ++ LI QY  L+  + ++L+F  D
Sbjct: 292 DMTKFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTTLLGLDDVVLEFQPD 351

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +++A+A++A+  ++     GAR L++++E  ++D+ F      +   V+I    V
Sbjct: 352 ALEAMAELAIKRHT-----GARGLRSIIELAMKDVMFDIPSRDDVAKVIITRASV 401


>gi|18423503|ref|NP_568792.1| CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding / protein binding [Arabidopsis thaliana]
 gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease regulatory subunit CLPX [Arabidopsis
           thaliana]
 gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           [Arabidopsis thaliana]
 gi|23296603|gb|AAN13130.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           [Arabidopsis thaliana]
 gi|332008960|gb|AED96343.1| CLP protease regulatory subunit X [Arabidopsis thaliana]
          Length = 579

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/436 (23%), Positives = 176/436 (40%), Gaps = 94/436 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R    +                  D   
Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D                             +++ 
Sbjct: 280 ADYNVAAAQQGIVY-----------ID-----------------------------EVDK 299

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + +  +K  R   +                
Sbjct: 300 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG--------------- 344

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            D +  D+  ++   G  F+D    I  R   + IG             V  ++V++   
Sbjct: 345 -DNIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASN-L 402

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
               +    IA G         L+PE  GRFPV V L +L ++    +LT+ ++ L  QY
Sbjct: 403 METVESSDLIAYG---------LIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQY 453

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ- 408
           K++ +   + L FTE ++  +A  A+  N+     GAR L+ ++E +L D  +   D   
Sbjct: 454 KKMYQMNSVKLHFTESALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEGT 508

Query: 409 ----EKTVVIDAEYVR 420
                + VV+D E V 
Sbjct: 509 GSDMIEAVVVDEEAVE 524


>gi|315302900|ref|ZP_07873639.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           ivanovii FSL F6-596]
 gi|313628732|gb|EFR97126.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           ivanovii FSL F6-596]
          Length = 419

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 171/427 (40%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKEDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E+++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|311107152|ref|YP_003980005.1| ATP-dependent Clp protease ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
 gi|310761841|gb|ADP17290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX 1
           [Achromobacter xylosoxidans A8]
          Length = 432

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 177/430 (41%), Gaps = 85/430 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  +   
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFIVG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K++  R   +GIG S        +       V   +  +  + ++       
Sbjct: 250 GAF-DGLEKVIRDRTEKSGIGFS------ASVRAKSERGVGELFSEVEPEDLIKF----- 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   
Sbjct: 298 ------GLIPELVGRLPVVATLDELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHI 423
            ++ A+A  A+   +     GAR L++++E+ L D  +        K VV+D   +    
Sbjct: 352 AALKAIARKALRRKT-----GARGLRSIIEQALLDTMYDLPSQGNVKRVVLDEGAIEGEG 406

Query: 424 GDFP--SETD 431
                 ++ D
Sbjct: 407 KPLLIYADED 416


>gi|239917501|ref|YP_002957059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
 gi|259491263|sp|C5CAX2|CLPX_MICLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239838708|gb|ACS30505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 432

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 109/429 (25%), Positives = 178/429 (41%), Gaps = 96/429 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD-----------ELM 52
           +P+EI   L+ ++IGQ+ AKR++A+A+ N ++R + P     DL D           E+ 
Sbjct: 63  TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NIL+VGPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  
Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADY 182

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V++             AE+ I+                            EID +++  
Sbjct: 183 DVKK-------------AEQGII-------------------------YIDEID-KISRK 203

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S + S      G  V    L  L   V     +   +   Q+                  
Sbjct: 204 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFL---------------Q 248

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   ++  +       LDE   I +R    GIG          L  +    V+  Y  + 
Sbjct: 249 IDTSNVLFIVAGAFAGLDEI--IGSRAGRKGIGFG------APLNHLGAGDVT--YADVR 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
            + +L              L+PE  GR PV   ++ L       +LT+ ++ L+ QY+++
Sbjct: 299 PEDLLKF-----------GLIPEFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKM 347

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
              +G+ L+F +D++DA+   A    +     GAR L+++ME VL+ + F      +  T
Sbjct: 348 FLMDGVELEFEQDALDAVVAQAEARGT-----GARGLRSIMENVLKPVMFELPSRSDVGT 402

Query: 412 VVIDAEYVR 420
           VVI  + VR
Sbjct: 403 VVISGDVVR 411


>gi|294783779|ref|ZP_06749103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480657|gb|EFG28434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           sp. 1_1_41FAA]
          Length = 430

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 162/417 (38%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 73  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 190

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 191 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 228

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 229 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKV---------------------- 266

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I +R +   IG   E VQ+  +   EG                F      
Sbjct: 267 ----------IKSRTNKKVIGFGAE-VQKQEMAGAEGE---------------FFKKVLP 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE
Sbjct: 301 EDLVKQGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F      + K + I  + + 
Sbjct: 361 EALTEIARRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDAID 412


>gi|291460967|ref|ZP_06026140.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379762|gb|EFE87280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium
           periodonticum ATCC 33693]
          Length = 433

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 162/417 (38%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 76  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 136 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 193

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 194 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 231

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 232 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKV---------------------- 269

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I +R +   IG   E VQ+  +   EG                F      
Sbjct: 270 ----------IKSRTNKKVIGFGAE-VQKQEMSGAEGE---------------FFKKVLP 303

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE
Sbjct: 304 EDLVKQGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTE 363

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F      + K + I  + + 
Sbjct: 364 EALTEIARRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKGITITKDAID 415


>gi|289434551|ref|YP_003464423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170795|emb|CBH27337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 419

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKDDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E ++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEHIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|260578312|ref|ZP_05846228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603614|gb|EEW16875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
          Length = 424

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 95/422 (22%), Positives = 166/422 (39%), Gaps = 88/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P  I   LD Y+IGQ +AKR +A+A+ N ++R Q+          D   EL   NIL++
Sbjct: 61  KPAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNATARRSDDEVELAKSNILML 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 121 GPTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +            
Sbjct: 181 GIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGG---- 229

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++       K +   V   +  L +      +  +   +  + 
Sbjct: 230 -------------RKHPNQEFIQFDTKNVLFIVAGAFSGLEK------VISERRGKKGLG 270

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                          I A+               +    VE   +  K+G          
Sbjct: 271 FGAE-----------ISAKSE----------EDPNPFQFVEPEDL-VKFG---------- 298

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L   +G+ 
Sbjct: 299 ------------LIPELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVR 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L F ++++  +A  A+   +     GAR L+++ME +L    FS   D +   V+I    
Sbjct: 347 LTFEDEALREIAQKALARET-----GARGLRSIMETLLLPTMFSIPEDEETGEVIITGAC 401

Query: 419 VR 420
            R
Sbjct: 402 AR 403


>gi|78211619|ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           CC9605]
 gi|123579027|sp|Q3ANI9|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. CC9605]
          Length = 449

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 102/432 (23%), Positives = 169/432 (39%), Gaps = 91/432 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQDIKSFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R  
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKAEMDVDQAQRGI 203

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +                                         EID ++A  S + S    
Sbjct: 204 I--------------------------------------YIDEID-KIARKSENPSITRD 224

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L   V     +   +   Q C                 +  D+ Q++
Sbjct: 225 VSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDC-----------------IQIDTSQIL 267

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
              G  F+   D +  R   N IG                  + +     +  +    A+
Sbjct: 268 FICGGAFVGLEDVVQKRMGRNAIGF-----------------MPSDGRGRSRANRDLQAA 310

Query: 302 GAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P D     L+PE  GR PV   L+ L++S  + ILT+    L+ Q++ L+  +
Sbjct: 311 QVLRHLEPDDLVRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMD 370

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVID 415
            + L F +D+I+A+A  A    +     GAR L+ ++E ++ D+ +        K   + 
Sbjct: 371 NVQLQFADDAIEAIAQEAHRRKT-----GARALRGIVEELMLDLMYDLPSQTSVKEFTVT 425

Query: 416 AEYVRLHIGDFP 427
              V  H G   
Sbjct: 426 RAMVEEHTGGKV 437


>gi|301633000|ref|XP_002945567.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, partial [Xenopus (Silurana) tropicalis]
          Length = 350

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 158/415 (38%), Gaps = 91/415 (21%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRL 73
           LD Y+IGQ  AK+ +++A+ N ++R +     D   E+   NILL+GPTG GKT +++ L
Sbjct: 2   LDDYVIGQDHAKKVLSVAVHNHYKRLEHAGRSDNDVEIAKSNILLIGPTGSGKTLLAQTL 61

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           AR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V           
Sbjct: 62  ARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYKVERAQRGIV----------- 110

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
                                         E+D +++  S + S      G  V    L 
Sbjct: 111 ---------------------------YIDEVD-KISRKSENPSITRDVSGEGVQQALLK 142

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
            +   +     +   +   Q               D   V   +I  +       L++  
Sbjct: 143 LMEGTIASVPPQGGRKHPQQ---------------DFLQVDTTNILFICGGAFSGLEKI- 186

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD-- 311
            I AR  GN IG   +       P   G+                          P D  
Sbjct: 187 -ISARGKGNSIGFGADVRD----PEARGT------------------GEILREVEPEDLL 223

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              L+PE  GR PV   L  L+      IL+  ++ L+ QY+ L + E   L F ED++ 
Sbjct: 224 KFGLIPEFVGRLPVLATLDDLDVDALMEILSKPKNALVKQYQRLFEIENARLIFQEDALK 283

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLH 422
           A+AD A+   +     GAR L+ ++E +L D  F        + VVI  + V   
Sbjct: 284 AIADKAIKRKT-----GARGLRAIVEGILLDTMFDLPSQDSIEEVVITRDVVEGR 333


>gi|91787907|ref|YP_548859.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas sp.
           JS666]
 gi|123165007|sp|Q12BY1|CLPX_POLSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91697132|gb|ABE43961.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas
           sp. JS666]
          Length = 421

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 171/424 (40%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKEKAKKDDVELTKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  +++  V  
Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQQGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFLQVDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG         L+   +  S++  +  +  + ++       
Sbjct: 251 GGAFSGLEKVIENRTEASGIGFG------ALVKSKKTRSLTESFKEVEPEDLIKF----- 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L +     ILT+ ++ ++ Q+ +L+  EG+ L+   
Sbjct: 300 ------GLIPELVGRMPVVATLAELTEDALVQILTEPKNAVVKQFSKLLSMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++ A+A  A+   +     GAR L++++E+ L D  F   +      VV+D   +  + 
Sbjct: 354 SALKAIARKALARKT-----GARGLRSILEQSLIDTMFDLPNASNVDKVVVDESTIEENK 408

Query: 424 GDFP 427
               
Sbjct: 409 APLL 412


>gi|116621145|ref|YP_823301.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224307|gb|ABJ83016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 424

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/415 (23%), Positives = 178/415 (42%), Gaps = 73/415 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P E+   LD+Y+IGQ+  K+ +A+A+ N  +R  +    +   EL   NILL+GPTG G
Sbjct: 66  KPLEVKEFLDQYVIGQEATKKKLAVAVYNHCKRIHMNRMRNSEVELQKSNILLIGPTGTG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A   V++ ++  +   
Sbjct: 126 KTLMAQTLAKILDVPFAIVDATTLTEAGYVGEDVENIILKLLQAADGDVQKCQQGIIY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E           ++N    GG 
Sbjct: 184 -----IDEIDKICRKDENPSITRDVSGEGVQQALLKILE---------GTVANVPPQGG- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+  P               V   +I  +    
Sbjct: 229 ----------------------RKHPHQEFTP---------------VDTTNILFICGGA 251

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L++   I  R     +G  +E          +G+ +     S   D  L   +    
Sbjct: 252 FVGLEKV--IARRTGKKSMGFLQE--------EEKGTGIRNTGVSGRRDIDLLTQAQPID 301

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +    +PE  GR PV   L+ L++S    ILT  ++ +I QY++L + E + L F+++
Sbjct: 302 LIK-FGFIPEFIGRLPVSAVLEDLDRSALIQILTKPKNAIIKQYQKLFEFENVRLKFSDE 360

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + +A+AD+A++       +GAR L+ ++E ++ D+ +     ++ +   +  E V
Sbjct: 361 ATEAIADLAMDRK-----VGARGLRMILEDLMLDLMYYLPSYKKVREFQVTKEMV 410


>gi|332283983|ref|YP_004415894.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
 gi|330427936|gb|AEC19270.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp.
           T7-7]
          Length = 435

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 175/416 (42%), Gaps = 83/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI S LD Y+IGQ   KR +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 66  TPEEIKSFLDGYVIGQDTPKRTLAVAVYNHYKRIRYGEIKGDDVELSKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE I++ L+      V +++R      
Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQNCNYDVDKAQR------ 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 180 AIIYIDE-IDKISRKADNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFIVG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  DK++  R   +GIG S     +    + E                LF      
Sbjct: 250 GAF-DGLDKVIRDRTERSGIGFSASVRAKAERGVGE----------------LFAEVEPE 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE+ GR PV   L+ L +     ILT+  ++LI Q+++L + E + LD   
Sbjct: 293 DLIK-FGLIPELVGRLPVLATLEELQEDTLVRILTEPRNSLIKQFQKLFEMEEVELDVRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++ A+A  A+   +     GAR L++++E+ L    +     +  K VV+D   +
Sbjct: 352 GALTAIAQRAIKRRT-----GARGLRSIVEQALLGTMYELPSKKNVKRVVLDESSI 402


>gi|300871120|ref|YP_003785992.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
 gi|300688820|gb|ADK31491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brachyspira
           pilosicoli 95/1000]
          Length = 402

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 172/420 (40%), Gaps = 82/420 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65
             P+EI + LD+Y+IGQ  AK+ +++A+ N ++R  Q   +   E+   N+LL+GPTG G
Sbjct: 61  LPPKEIKALLDQYVIGQDYAKKILSVAVYNHYKRIMQDNTNNDVEIEKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A   V+ + +  +   
Sbjct: 121 KTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADGDVKLAEKGIIY-- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        + S TR+V  + ++   +   E  I                  
Sbjct: 179 -----IDEIDKISRKSESRSITRDVSGEGVQQALLKIIEGTISSVPPYGG---------- 223

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                              +      ID   ++  +I  +   G
Sbjct: 224 ----------------------------------RKHPHQNNID---INTSNILFI--CG 244

Query: 246 IVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F+D  +K I  R S  G+G + E      +  +E          I T+ ++       
Sbjct: 245 GAFID-IEKSIAERTSKKGLGFAAE------VNSMENLEYDEIMKHIATEDLVKF----- 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L+ L + D   IL + +++LI QYK+L + + + L F +
Sbjct: 293 ------GLIPELIGRLPVVATLQELKEEDLIRILKEPKNSLIKQYKKLFEYDNVDLSFDD 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++  +   A+         GAR L+ + E+V+ D  +     ++   +   EYV   + 
Sbjct: 347 EALKVIVKKAME-----EHTGARGLRALFEKVMLDSMYDLPSDKKSIKI-KKEYVEEKLN 400


>gi|311064595|ref|YP_003971320.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           bifidum PRL2010]
 gi|310866914|gb|ADP36283.1| ClpX ATP-dependent Clp protease ATP-binding subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 437

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 182/441 (41%), Gaps = 111/441 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------------PA 45
            P EI + LDRY+IGQ  AKR +++A+ N ++R  +                        
Sbjct: 64  KPAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDP 123

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
               E+   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ 
Sbjct: 124 LADVEVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQR 183

Query: 106 LVDVAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
           L+  A   V  ++      DE+ + A  + E            TS TR+V  + ++   +
Sbjct: 184 LISAADGDVERAQHGIIYIDEIDKIARKSGEN-----------TSITRDVSGEGVQQALL 232

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              E                                + V   G +K              
Sbjct: 233 KILE-----------------------------GTIASVPVEGTRKHR------------ 251

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
                   D DTV  D+  ++   G  F+   D +  R   +  G        ++ P   
Sbjct: 252 --------DQDTVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKP--- 300

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                     ++ D +               LLPE  GR PV   L  L ++D   ILT+
Sbjct: 301 ----EELLEQVSADDLAEF-----------GLLPEFIGRLPVVSVLDELTEADLARILTE 345

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+++   +G+ L FTE +++A+A  A+   +     GAR L++++E+ LE+ 
Sbjct: 346 PKNALVKQYRKMFAVDGVDLVFTEQAVNAIATTAITRGT-----GARGLRSIIEKTLEET 400

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    + + + V++DA  VR
Sbjct: 401 MFELPGMDDVQQVIVDAASVR 421


>gi|237739237|ref|ZP_04569718.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
 gi|229422845|gb|EEO37892.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           2_1_31]
          Length = 430

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 162/417 (38%), Gaps = 80/417 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LL+GPTG 
Sbjct: 73  LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R  +  
Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAERGII-- 190

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                                   + F K  R  E      D+        +        
Sbjct: 191 ----------------------YIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTK 228

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
           + V      +  ++ +     K I   V   +  L +                       
Sbjct: 229 SQVPPEGGRKHPNQELIEIDTKNILFIVGGAFEGLEKV---------------------- 266

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                     I +R +   IG   E VQ+  +   EG                F      
Sbjct: 267 ----------IKSRTNKKVIGFGAE-VQKQEMAGAEGE---------------FFKKVLP 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L + EG  L+FTE
Sbjct: 301 EDLVKQGIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTE 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVR 420
           +++  +A  A+        +GAR L+ ++E  + DI F      + K + I  + + 
Sbjct: 361 EALTEIARRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDAID 412


>gi|298369174|ref|ZP_06980492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283177|gb|EFI24664.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 424

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/421 (26%), Positives = 183/421 (43%), Gaps = 89/421 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+   EL   NILL+GPTG GK
Sbjct: 64  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 124 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 181 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 225

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 226 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +        +G F +
Sbjct: 248 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENAD-------ITGLFEI 286

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E + L+
Sbjct: 287 VEPEDLIKFGLIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           F E+++ ++A  A+   +     GAR L++++ER L D  +   DL+    VVI  + + 
Sbjct: 347 FEEEALRSIARQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVAKVVIGKDVIE 401

Query: 421 L 421
            
Sbjct: 402 K 402


>gi|313633468|gb|EFS00292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri FSL N1-067]
 gi|313638158|gb|EFS03414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           seeligeri FSL S4-171]
          Length = 419

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKDDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F  +
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEATLVSILTEPKNALVKQYKRMLELDDVELEFEPE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E ++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEHIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|256544469|ref|ZP_05471842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399794|gb|EEU13398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           vaginalis ATCC 51170]
          Length = 402

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 173/418 (41%), Gaps = 85/418 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD+Y+I Q+ AK+ +++++ N ++R     D +D  EL   NIL++GPTG G
Sbjct: 61  TPSEIKDYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDSKDDVELQKSNILMLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE II  LV  A   +  ++   +   
Sbjct: 121 KTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAQTGIIY-- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA+              
Sbjct: 179 -----IDEIDKITRKSENPSITRDVSGEGVQQALL--KLIEGTVANVPPQGG-------- 223

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                   +    + +  D+  ++   G
Sbjct: 224 ---------------------------------------RKHPSQEYIQVDTTNILFIVG 244

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F    D I  R +   IG   E  +   + L +          + T+ +L        
Sbjct: 245 GAFDGIKDIIKQRTNKKSIGFGSEDSENKEVSLAD----------VTTEDLLKF------ 288

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L+ L+ +    IL + +++L+ QY++L + +G+ L F ++
Sbjct: 289 -----GLIPEFIGRVPIVVSLEDLDVNSLVKILQEPKNSLLKQYQKLFELDGVKLTFEDE 343

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++  +A+ A    +     GAR L+T++E +L D+ F        K V++    ++  
Sbjct: 344 AVKEIAEKAFKQET-----GARGLRTILEDLLLDVMFEIPSKDHIKEVIVSKGAIKDK 396


>gi|78183645|ref|YP_376079.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CC9902]
 gi|123729976|sp|Q3B0U2|CLPX_SYNS9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78167939|gb|ABB25036.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           sp. CC9902]
          Length = 450

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 164/428 (38%), Gaps = 80/428 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P EI S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPLEIKSFLDQQVVGQNAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +  D+ Q+
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDC-----------------IQIDTSQI 266

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F+   D +  R   N IG       R           +    ++  D ++   
Sbjct: 267 LFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRSRANRDLQAAQVLRNLEPDDLV--- 323

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L
Sbjct: 324 --------KYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQL 375

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
            F +D+I A+A  A    +     GAR L+ ++E ++ D+ +        K   +    V
Sbjct: 376 QFADDAITAIAQEAHRRKT-----GARALRGIIEEIMLDLMYDLPSQSSVKDFTVTRSMV 430

Query: 420 RLHIGDFP 427
             H G   
Sbjct: 431 EEHTGGKV 438


>gi|260435985|ref|ZP_05789955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. WH 8109]
 gi|260413859|gb|EEX07155.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. WH 8109]
          Length = 449

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 168/432 (38%), Gaps = 91/432 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P++I + LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+GP
Sbjct: 84  PQDIKNFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R  
Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQRGI 203

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +                                         EID ++A  S + S    
Sbjct: 204 I--------------------------------------YIDEID-KIARKSENPSITRD 224

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L   V     +   +   Q C                 +  D+ Q++
Sbjct: 225 VSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDC-----------------IQIDTSQIL 267

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
              G  F+   D +  R   N IG                  +       +  +    A+
Sbjct: 268 FICGGAFVGLEDVVQKRMGRNAIGF-----------------MPGDGRGRSRANRDLQAA 310

Query: 302 GAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV   L+ L++S  + ILT+    L+ Q++ L+  +
Sbjct: 311 QVLRHLEPDDLVRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMD 370

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVID 415
            + L F +D+I+A+A  A    +     GAR L+ ++E ++ D+ +        K   + 
Sbjct: 371 NVQLQFADDAIEAIAQEAHRRKT-----GARALRGIVEELMLDLMYDLPSQTSVKEFTVT 425

Query: 416 AEYVRLHIGDFP 427
              V  H G   
Sbjct: 426 RTMVEEHTGGKV 437


>gi|317153551|ref|YP_004121599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943802|gb|ADU62853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 416

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 173/426 (40%), Gaps = 83/426 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPT 62
             P+EI + LD Y+IGQ+ AK+ +++A+ N ++R    A        E+   NILL+GPT
Sbjct: 60  LPPQEIKALLDEYVIGQEQAKKILSVAVHNHYKRVFYAAANTGPDEVEIDKSNILLIGPT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R  +
Sbjct: 120 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIDAASRGII 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID +VA      S     
Sbjct: 180 --------------------------------------YIDEID-KVARKGDSPSITRDV 200

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +         K   +   Q+             I MDT    +I  + 
Sbjct: 201 SGEGVQQALLKIIEGTEANIPPKGGRKHPQQE------------FIRMDT---SNILFIL 245

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
               + LD+  +   + SG G G   E  +   L  + G +          + +  I  G
Sbjct: 246 GGAFIGLDKIVQQRKQGSGMGFGAKVEAKRETDLGEMMGLA----------EPMDLIKFG 295

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P++  L+ L + D   IL + ++ LI QY++L + + + L F
Sbjct: 296 ---------LIPEFVGRIPIQTALQDLTEDDLMRILQEPKNALIKQYRKLFELDKVELRF 346

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           TE+++ ++A  A+   +     GAR L+ V+E+ + +I +    L   +  VI+   V  
Sbjct: 347 TENALTSIAKQAIQRKT-----GARGLRNVLEKSMLEIMYKLPSLSGVRECVINQAVVEN 401

Query: 422 HIGDFP 427
            +    
Sbjct: 402 GMEPLL 407


>gi|161609274|ref|NP_888798.2| ATP-dependent protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
 gi|161610395|ref|NP_884266.2| ATP-dependent protease ATP-binding subunit [Bordetella
           parapertussis 12822]
 gi|46576487|sp|Q7W8X1|CLPX_BORPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46576495|sp|Q7WK82|CLPX_BORBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 434

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/416 (24%), Positives = 168/416 (40%), Gaps = 81/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R      
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR------ 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 180 AIIYIDE-IDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++         I   V   +  L +      +  D   +  I       
Sbjct: 227 -----GGRKHPNQDFVQVDTTNILFIVGGAFDGLEK------VIRDRTEKSGIGFSAA-- 273

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + A+       +  E    DL+                             
Sbjct: 274 ---------VRAKSERGVGELFSEAEPEDLIKF--------------------------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   D
Sbjct: 298 -----GLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPD 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           ++ A++  A+   +     GAR L++++E  L D  +          VV++A  V 
Sbjct: 353 ALKAISRKALKRKT-----GARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVE 403


>gi|239637528|ref|ZP_04678500.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus warneri L37603]
 gi|239596746|gb|EEQ79271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus warneri L37603]
 gi|330684285|gb|EGG96023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU121]
          Length = 420

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 182/427 (42%), Gaps = 85/427 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           +LT   +P+EI+  L+ Y+IGQ+ AK+A+++A+ N ++R Q   P +   EL   NI L+
Sbjct: 57  ELTELPTPKEIMDHLNEYVIGQEKAKKALSVAVYNHYKRIQQLGPNEDDVELQKSNIALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +     
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----- 171

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE+ I+                            EID ++A  S + S  
Sbjct: 172 --------DKAEKGII-------------------------YVDEID-KIARKSENTSIT 197

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L         +   +   Q+            LI +DT    +I 
Sbjct: 198 RDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNIL 242

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +       +DE   I  R     IG  S E  + D   L+E                  
Sbjct: 243 FILGGAFDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI---------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + +
Sbjct: 285 ----RPEDLQSYGLIPEFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDNV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L F+E+++ A+++ A+   +     GAR L++++E  L DI +     ++ T VVI  +
Sbjct: 341 ELVFSEEALSAISEKAIARKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVVITEQ 395

Query: 418 YVRLHIG 424
            +   + 
Sbjct: 396 TINDEVE 402


>gi|289705666|ref|ZP_06502051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
 gi|289557614|gb|EFD50920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus
           luteus SK58]
          Length = 432

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 178/429 (41%), Gaps = 96/429 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD-----------ELM 52
           +P+EI   L+ ++IGQ+ AKR++A+A+ N ++R + P     DL D           E+ 
Sbjct: 63  TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NIL+VGPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A  
Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADY 182

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V++             AE+ I+                            EID +++  
Sbjct: 183 DVKK-------------AEQGII-------------------------YIDEID-KISRK 203

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           S + S      G  V    L  L   V     +   +   Q+                  
Sbjct: 204 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFL---------------Q 248

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +   ++  +       LDE   I +R    GIG          L  +    V+  Y  + 
Sbjct: 249 IDTSNVLFIVAGAFAGLDEI--IGSRAGRKGIGFG------APLNHLGAGDVT--YADVR 298

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
            + +L              L+PE  GR PV   ++ L       +LT+ ++ L+ QY+++
Sbjct: 299 PEDLLKF-----------GLIPEFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKM 347

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
              +G+ L+F +D++DA+   A    +     GAR L+++ME VL+ + F      +  T
Sbjct: 348 FLMDGVELEFEQDALDAVVAQAEARGT-----GARGLRSIMENVLKPVMFELPSRSDVGT 402

Query: 412 VVIDAEYVR 420
           VVI  E VR
Sbjct: 403 VVISGEAVR 411


>gi|73662399|ref|YP_301180.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642789|sp|Q49YA6|CLPX_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72494914|dbj|BAE18235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 420

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/433 (24%), Positives = 182/433 (42%), Gaps = 85/433 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           LT   +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   N+ L+G
Sbjct: 58  LTELPTPKEIMDKLNDYVIGQEKAKKSLAVAVYNHYKRVQQLGPNEDEVELQKSNVALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +      
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI------ 171

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                    AE+ I+                            EID ++A  S + S   
Sbjct: 172 -------DKAEKGII-------------------------YVDEID-KIARKSENTSITR 198

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L         +   +   Q+            LI +DT    +I  
Sbjct: 199 DVSGEGVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILF 243

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           V       +DE   I  R     IG  S E  + D   ++E                   
Sbjct: 244 VLGGAFDGIDEV--IKRRLGEKVIGFSSSEASKYDEDAILEQI----------------- 284

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                   +   L+PE  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + 
Sbjct: 285 ---RPEDLQSYGLIPEFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDDVT 341

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+FT++++ A+++ A+   +     GAR L++++E  L DI +          VVI AE 
Sbjct: 342 LEFTDEALSAISNKAIKRKT-----GARGLRSIIEEALIDIMYDVPSSDGVVKVVITAET 396

Query: 419 VRLHIGDFPSETD 431
           +         + D
Sbjct: 397 INDEKEPELYDKD 409


>gi|16800375|ref|NP_470643.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria innocua
           Clip11262]
 gi|315282077|ref|ZP_07870567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           marthii FSL S4-120]
 gi|21263473|sp|Q92C84|CLPX_LISIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16413780|emb|CAC96538.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           innocua Clip11262]
 gi|313614279|gb|EFR87933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           marthii FSL S4-120]
 gi|313623989|gb|EFR94087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           innocua FSL J1-023]
          Length = 419

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKEDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPT 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E+++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|33573324|emb|CAE37307.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           parapertussis]
 gi|33575673|emb|CAE32751.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           bronchiseptica RB50]
          Length = 453

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/416 (24%), Positives = 168/416 (40%), Gaps = 81/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 85  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 144

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R      
Sbjct: 145 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR------ 198

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 199 AIIYIDE-IDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 245

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++         I   V   +  L +      +  D   +  I       
Sbjct: 246 -----GGRKHPNQDFVQVDTTNILFIVGGAFDGLEK------VIRDRTEKSGIGFSAA-- 292

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + A+       +  E    DL+                             
Sbjct: 293 ---------VRAKSERGVGELFSEAEPEDLIKF--------------------------- 316

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   D
Sbjct: 317 -----GLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPD 371

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           ++ A++  A+   +     GAR L++++E  L D  +          VV++A  V 
Sbjct: 372 ALKAISRKALKRKT-----GARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVE 422


>gi|328948167|ref|YP_004365504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           succinifaciens DSM 2489]
 gi|328448491|gb|AEB14207.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           succinifaciens DSM 2489]
          Length = 420

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 180/427 (42%), Gaps = 83/427 (19%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNI 56
           + ++   SP+E  + LD+Y+IGQ  AK+ +++A+ N +++  +  +    +  ++   NI
Sbjct: 57  IDMSAIPSPKEFKAYLDQYVIGQDYAKKVLSVAVYNHYKQLSISKEQQLTMDVKIEKSNI 116

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE ++  L++ A   +  
Sbjct: 117 LLLGPTGSGKTLLAKTLAQKLNVPFAIADATTLTEAGYVGEDVENVLLKLINAADGDIAA 176

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           + R        I   + I         TS TR+V  + ++   +   E            
Sbjct: 177 AER-------GIIFIDEIDKIGRKSENTSITRDVSGEGVQQALLKILEGTHASVPPQGG- 228

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                                                       +  +  +ID+DT    
Sbjct: 229 -------------------------------------------RKHPNQEMIDIDT---T 242

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  +     V LD+   I  R S   IG   EG  R     +E          + +D +
Sbjct: 243 NILFICGGAFVGLDKI--IEQRLSTASIGFGAEGTHRTNEERME------LLNQVTSDDL 294

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           +              L+PE+ GR P+   LK LNK D + IL + ++ +  Q++ +   +
Sbjct: 295 VKF-----------GLIPELIGRLPMTCALKELNKEDLKRILVEPKNAITKQFQAIFAID 343

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            + L F +D+ID +A++A+   +     GAR L+ ++E +L D+ +    ++  K +VI 
Sbjct: 344 DVELTFDDDAIDQIAEMAIRSKT-----GARGLRAIVEHILLDLMYEVPSVKGKKKLVIT 398

Query: 416 AEYVRLH 422
            + V   
Sbjct: 399 KDIVNQK 405


>gi|317405212|gb|EFV85551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Achromobacter
           xylosoxidans C54]
          Length = 432

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 174/417 (41%), Gaps = 83/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R  +   
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIY-- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 184 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 228

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +                   + D V  D+  ++   G
Sbjct: 229 ----------------------RKHP-----------------NQDFVQVDTTNILFIVG 249

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F D  +K++  R   +GIG S        +       V   +  +  + ++       
Sbjct: 250 GAF-DGLEKVIRDRTEKSGIGFS------ASVRAKSERGVGELFSEVEPEDLIKF----- 297

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   
Sbjct: 298 ------GLIPELVGRLPVVATLDELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
            ++ A+A  A+   +     GAR L++++E+ L D  +        K VV+D   + 
Sbjct: 352 AALKAIARKALKRKT-----GARGLRSIIEQALLDTMYDLPSQGNVKRVVLDEGAIE 403


>gi|225874968|ref|YP_002756427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium capsulatum ATCC 51196]
 gi|225791560|gb|ACO31650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium capsulatum ATCC 51196]
          Length = 426

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 172/418 (41%), Gaps = 73/418 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+        EL   NILLVGPTG G
Sbjct: 68  KPLEVKAFLDEYVIGQEQTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LA++   PF  V+ T  TE GYVG +VE II  L+  A   V  ++   +   
Sbjct: 128 KTLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAADGDVARAQTGIIY-- 185

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E           ++N    GG 
Sbjct: 186 -----IDEIDKIGRKDENPSITRDVSGEGVQQALLKILE---------GTVANVPPQGG- 230

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +         I       +  L R    R      V + ++       
Sbjct: 231 -------RKHPHQEFTPVDTTNILFICGGAFVGLERVVGRR------VGKKALGFKA--- 274

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    I  +D       +R     +LL + E   +  +YG I              
Sbjct: 275 ---------IAEKDQQENGQTTRTQRDTELLRMAEPQDL-IRYGLI-------------- 310

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                   PE  GR PV   L  L+++    ILT   + ++ QY++L + EG+ L F+E+
Sbjct: 311 --------PEFVGRLPVIGILDELDEAALVEILTKPRNAILKQYQKLFEFEGVNLVFSEE 362

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           +  A+A  A++       +GAR L+ ++E ++ D+ +     +    +VIDAE V+  
Sbjct: 363 AAHAIALEALDRK-----VGARGLRMILEELMLDLMYHLPSNKRVSDLVIDAEMVKKR 415


>gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 425

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 167/431 (38%), Gaps = 96/431 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +P EI + LD Y+IGQ  AK+ +A+A+ N ++R                P     EL   
Sbjct: 61  TPAEIKAFLDDYVIGQDQAKKVLAVAVYNHYKRIYQKKPNSRPRPGVKGPTGEEVELSKS 120

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A   V
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 180

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            ++ R  V                                         EID ++A    
Sbjct: 181 EKASRGIV--------------------------------------YIDEID-KIARKGD 201

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             S     GG  V    L                   ++     +      +    + V 
Sbjct: 202 MPSATRDVGGEGVQQALL-----------------KIIEGTRANVTPRGGKKYNQQEYVQ 244

Query: 235 RDSIQMVENYGIVF--LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            D+  ++   G  F  +D    I  R    G+G   +   R+   + E            
Sbjct: 245 VDTTNILFICGGAFHGIDGV--IKRRVGEKGLGFGAKITHREERSVGE------------ 290

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                 +A           ++PE  GR P+   L  L + D  +IL+  ++ L+ QY++L
Sbjct: 291 -----LLALTEPEDLMRFGMIPEFIGRLPMIATLNDLKEEDLVIILSQPKNALVKQYQKL 345

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
            + E + L FT++++ A+A  A+  +S     GAR L+ ++E  + +I +     +  K 
Sbjct: 346 FEFEKVKLTFTKEALRAIAREAMRRHS-----GARGLRAILEDAMLEIMYDVPFREGVKE 400

Query: 412 VVIDAEYVRLH 422
             I  + +  H
Sbjct: 401 CKITEQVITRH 411


>gi|260101782|ref|ZP_05752019.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|112148408|gb|ABI13542.1| Clp protease ATP-binding subunit [Lactobacillus helveticus CNRZ32]
 gi|260084426|gb|EEW68546.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
 gi|328468550|gb|EGF39552.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus MTCC 5463]
          Length = 424

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 174/417 (41%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I                   
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGG----------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M       I   V   +  + +   +RL       + +I        
Sbjct: 225 ------RKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRL------GKKTIGFGAEN-- 270

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               + DKI A                D    +  + +  K+G I               
Sbjct: 271 ----DVDKIDA---------------DDWTRHLTTADL-VKFGMI--------------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR P+   L +L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ +
Sbjct: 296 -------PEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+AD+A+  N     +GAR L+T++E  + DI +     ++ + V +  + +  H
Sbjct: 349 LKAIADLAIQRN-----MGARGLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVIIRH 400


>gi|320094138|ref|ZP_08025951.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319978940|gb|EFW10470.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 419

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 170/417 (40%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGV 64
            PREI   L+ ++IGQ  AKRA+++A+ N ++R +      +E M     NILL+GPTG 
Sbjct: 64  KPREINEFLNSWVIGQTRAKRALSVAVYNHYKRVRSREAGHEEDMLGTKSNILLLGPTGT 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ R  +  
Sbjct: 124 GKTHLARSLARLLEVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAERGIIY- 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 183 ------IDEIDKIGRKAENASITRDVSGEGVQQALLKIIE-------------------- 216

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V  SG +K       +                  +    I  +   
Sbjct: 217 ---------GTVASVPPSGGRKHPHQQFLE------------------IDTSGILFIAAG 249

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               ++E  K  AR      G   E        L   S +   Y ++N + +        
Sbjct: 250 AFAGIEEIVK--ARLGQRSTGFGSE--------LKSASEMGDLYEAVNAEDLHKF----- 294

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR P+    K L K D   +LT+  ++L+ QY+ L + +GI LDFT 
Sbjct: 295 ------GMIPEFIGRLPILTSTKELTKEDLVRVLTEPNNSLVRQYQHLFELDGIELDFTR 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
            ++ A+A  A    +     GAR L ++MER L D+ F      +   VVI  E+V 
Sbjct: 349 GALLAIAAQANERKT-----GARGLSSIMERTLSDLMFELPSRDDVARVVITREHVN 400


>gi|260222836|emb|CBA32802.1| ATP-dependent Clp protease ATP-binding subunit clpX [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 421

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 172/424 (40%), Gaps = 92/424 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P +I + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPADIKANLDNYVIGQEPAKRTLAVAVYNHYKRLKHKEKAKKDDVELAKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE I+  L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCNYDVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D V  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFVQIDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I +R   +GIG               G++V +K     T+         F
Sbjct: 251 GGAFAGLEKVIESRTESSGIGF--------------GAAVKSKQQRALTE--------VF 288

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG  
Sbjct: 289 KEVEPEDLIKFGLIPELVGRMPVVATLAELTEEALVQILTEPKNALVKQYAKLLAMEGTE 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEY 418
           L+    ++ A+A  A+   +     GAR L++++E+ L D  +   +    + VV+D   
Sbjct: 349 LEIRPAALKAIAKRALIRKT-----GARGLRSILEQSLIDTMYELPNAGNVEKVVVDEST 403

Query: 419 VRLH 422
           +  +
Sbjct: 404 IEEN 407


>gi|317968360|ref|ZP_07969750.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0205]
          Length = 451

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 166/423 (39%), Gaps = 82/423 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P++I + LD  ++GQ++AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 84  KPQDIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATKLHKSNILLIG 143

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 144 PTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQRG 203

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 204 II--------------------------------------YIDEID-KIARKSENPSITR 224

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 225 DVSGEGVQQALLKLLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 269

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG   EG +R      + ++   ++   +      + 
Sbjct: 270 ICGGAFVGLD--DVVQRRMGRNAIGFIPEGGRRGRQSKDQQAAQVLRHLQPD----DLVK 323

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
            G         L+PE  GR PV   L+ L+      ILT+    L+ Q++ L+  + + L
Sbjct: 324 YG---------LIPEFIGRMPVNAVLEPLDNHALEAILTEPRDALVKQFQTLLSMDDVRL 374

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYV 419
           +F   +++A+A  A    +     GAR L+ ++E ++ D+ +    D   K   +    V
Sbjct: 375 EFEPGAVEAIAAEAHRRKT-----GARALRGIVEELMLDLMYELPSDKSTKAFTVTRALV 429

Query: 420 RLH 422
              
Sbjct: 430 EER 432


>gi|161507349|ref|YP_001577303.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           helveticus DPC 4571]
 gi|172048267|sp|A8YUS4|CLPX_LACH4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160348338|gb|ABX27012.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
          Length = 424

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 174/417 (41%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDFDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I                   
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGG----------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   + M       I   V   +  + +   +RL       + +I        
Sbjct: 225 ------RKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRL------GKKTIGFGAEN-- 270

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               + DKI A                D    +  + +  K+G I               
Sbjct: 271 ----DVDKIDA---------------DDWTRHLTTADL-VKFGMI--------------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR P+   L +L+  D   +LT+ ++ L+ QYK+L+  +G+ L FT+ +
Sbjct: 296 -------PEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+AD+A+  N     +GAR L+T++E  + DI +     ++ + V +  + +  H
Sbjct: 349 LKAIADLAIQRN-----MGARGLRTIIENSIMDIMYKTPSEKDIEAVEVTKDVIIRH 400


>gi|68535618|ref|YP_250323.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           jeikeium K411]
 gi|68263217|emb|CAI36705.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           jeikeium K411]
          Length = 424

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 166/422 (39%), Gaps = 88/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P  I   LD Y+IGQ +AKR +A+A+ N ++R Q+          D   EL   NIL++
Sbjct: 61  KPAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNAAARRSDDEVELAKSNILML 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 121 GPTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +            
Sbjct: 181 GIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGG---- 229

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++       K +   V   +  L +      +  +   +  + 
Sbjct: 230 -------------RKHPNQEFIQFDTKNVLFIVAGAFSGLEK------VISERRGKKGLG 270

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                          I A+               +    VE   +  K+G          
Sbjct: 271 FGAE-----------ISAKSE----------EDPNPFQFVEPEDL-VKFG---------- 298

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE+ GR PV  H+  L++     +LT+ +++L+ QY+ L   +G+ 
Sbjct: 299 ------------LIPELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVR 346

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L F ++++  +A  A+   +     GAR L+++ME +L    F+   D +   V+I    
Sbjct: 347 LTFEDEALREIAQKALARET-----GARGLRSIMETLLLPTMFAIPEDEETGEVIITGAC 401

Query: 419 VR 420
            R
Sbjct: 402 AR 403


>gi|298372621|ref|ZP_06982611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275525|gb|EFI17076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 404

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/424 (23%), Positives = 177/424 (41%), Gaps = 83/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI + LD+Y+IGQ +AK+ +++A+ N ++R     D  D E+   NI++VG TG GK
Sbjct: 59  KPREIKAFLDQYVIGQDEAKKFLSVAVYNHYKRISQLTDDNDVEIEKSNIIMVGATGTGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A+    PF  V+ T  TE GYVG ++E I+  L+  A   V  + +  V    
Sbjct: 119 TLLARTIAQKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVAAAEKGIV---- 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A    + S      G  
Sbjct: 175 ----------------------------------FIDEID-KIARKGDNPSITRDVSGEG 199

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    +   +   QK               M  V+  +I  +     
Sbjct: 200 VQQGLLKLLEGSVVLVPPQGGRKHPEQK---------------MVEVNTKNILFICGGAF 244

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              D  +K I +R + N +G   +                    S+  D    +   +  
Sbjct: 245 ---DGIEKRIASRLNTNVVGFRDKT-------------------SVTIDKSNIMQYISPQ 282

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +   L+PEI GR P+  +L+ L+++  + IL + ++++I QY++L   + + L F E+
Sbjct: 283 DLKAFGLIPEIIGRLPILTYLEPLDRNALKRILVEPKNSIIKQYQKLFGMDNVELSFDEE 342

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            ID + D A+        +GAR L++++E ++ D+ F      +  + I  EY +  +  
Sbjct: 343 VIDYVVDKAIEYK-----LGARGLRSIVETIMIDVMFDIPSEHKDKLRIQLEYAKDKVEK 397

Query: 426 FPSE 429
             S+
Sbjct: 398 ASSK 401


>gi|302337809|ref|YP_003803015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634994|gb|ADK80421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Spirochaeta
           smaragdinae DSM 11293]
          Length = 413

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 176/417 (42%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y++GQ+ AK+ +++A+ N ++R      + D  E+   N+LL+GPTG G
Sbjct: 62  TPQEIHTYLDEYVVGQETAKKVLSVAVYNHYKRIAQRGKIEDDIEIEKANVLLLGPTGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A N +  + R  +   
Sbjct: 122 KTLLAKTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAERGIIY-- 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 180 -----IDEIDKISRKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQGG-------- 224

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+               M  +   +I  +    
Sbjct: 225 ----------------------RKHPNQE---------------MIRIDTTNILFIVGGA 247

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD    I  R + + +G   + +      L      S  Y  ++ D ++        
Sbjct: 248 FVGLDRI--IEQRVAQHPLGFGADVMASSEKDL------SALYSKLHPDDLVKF------ 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ V L  L+K +   I+++ +++++ QY+  +K + + L F   
Sbjct: 294 -----GLIPEFIGRLPIHVALSDLSKEELMRIVSEPKNSILRQYQASLKLDEVNLVFQPG 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +++A+A+ A+   +     GAR L+ ++E V+ DI +    ++  K VV+  + +  
Sbjct: 349 AVEAIAEKALEQKT-----GARGLRAIVENVMLDIMYEIPSIEGAKQVVVTRDVIEK 400


>gi|169824904|ref|YP_001692515.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 29328]
 gi|167831709|dbj|BAG08625.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 29328]
          Length = 411

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 166/416 (39%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+I Q++ K+A+A+A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 61  KPIEIKDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LA++   PF   + T  TE GYVG +VE +I  L+  A   + ++ +  +    
Sbjct: 121 TLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIY--- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I          N    GG  
Sbjct: 178 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTI---------CNVPPQGGRK 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  ++          + I   V   +  L +                         
Sbjct: 225 HPNQEYIQV--------DTRNILFIVGGAFEGLEKI------------------------ 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                   I  R     IG   +    +   + E                LF       +
Sbjct: 253 --------IERRTETKSIGFGADLGDNEHKKISE----------------LFKDFRPEDL 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED+
Sbjct: 289 IK-FGLIPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + A+A +A +  +     GAR L+T++E+ L +I F     Q+   V++  E V  
Sbjct: 348 LKAIAKLAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVILTKESVLE 398


>gi|222099516|ref|YP_002534084.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
 gi|221571906|gb|ACM22718.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
          Length = 406

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/403 (23%), Positives = 164/403 (40%), Gaps = 79/403 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI +ELD+YIIGQ+ AKR +++A+ N ++R        D E+   N+LL+GPTG GK
Sbjct: 57  TPAEIKAELDKYIIGQERAKRILSVAVYNHYKRVFSNLSSNDVEIEKSNVLLIGPTGTGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++ A   +  ++   +    
Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAANFDLERAQYGII---- 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 173 ----------------------------------YIDEID-KIAKKSPNPSITRDVSGEG 197

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   +     +   +   Q+                  V   +I  +     
Sbjct: 198 VQQALLKILEGTIANVPPQGGRKHPYQEFIK---------------VDTRNILFIVGGAF 242

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L+E   I  R     +G   E   +  + + E          +  D ++         
Sbjct: 243 DGLEEI--IKRRLQSTTMGFGAEIKSKKEMRIGEI------LRHVTPDDLV--------- 285

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L + D   IL + ++ ++ QY++L + +G+ L+ T+++
Sbjct: 286 --QYGLIPEFVGRLPVIATLDDLTEEDLIRILKEPKNAIVKQYQKLFEIDGVKLEVTDEA 343

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +  +A  A+   +     GAR L+ V E ++ D+ F    L+ 
Sbjct: 344 LRIIAREALKRGT-----GARALRNVFEELMIDMMFELPSLKN 381


>gi|154249524|ref|YP_001410349.1| ATP-dependent protease ATP-binding subunit ClpX [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153460|gb|ABS60692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Fervidobacterium nodosum Rt17-B1]
          Length = 410

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 173/417 (41%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I  ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   NI+L+GPTG GK
Sbjct: 61  TPSKIKQELDKYVIGQERVKKILSVAVYNHYKRVFFGKDTNDVEIEKSNIILIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE ++  L++V    V  ++   +    
Sbjct: 121 TLMARILAKILDVPFAIADATPLTEAGYVGEDVENVVLRLLEVTNFDVERAQYGII---- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 177 ----------------------------------YIDEID-KIARKSPNPSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+                  V   +I  +     
Sbjct: 202 VQKGLLKIVEGTIANVPPQGGRKHPYQEFIK---------------VDTTNILFIVGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LDE   I  R  G+ IG +     ++ + L E           +      +  G    
Sbjct: 247 DGLDEI--IKRRIEGSTIGFNAPVKSKEQMRLGE--------ILQHVTPDDLVQYG---- 292

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L  L+  D   IL + ++ ++ QYK+L + +G+ L+  E +
Sbjct: 293 -----LMPEFVGRFPVIGTLDDLSVDDLVRILKEPKNAVLKQYKKLFEIDGVTLEIEEQA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++V E V+ DI F   DL+  + V+I  E V   
Sbjct: 348 LYAIAKEALRRGT-----GARALKSVFEEVMIDIMFDIPDLKAVEKVIITEECVTKK 399


>gi|16803308|ref|NP_464793.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes EGD-e]
 gi|46907495|ref|YP_013884.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47093916|ref|ZP_00231655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 4b H7858]
 gi|47097411|ref|ZP_00234960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 1/2a F6854]
 gi|217964589|ref|YP_002350267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes HCC23]
 gi|224499060|ref|ZP_03667409.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes Finland 1988]
 gi|224501786|ref|ZP_03670093.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL R2-561]
 gi|226223871|ref|YP_002757978.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes Clip81459]
 gi|254824671|ref|ZP_05229672.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL J1-194]
 gi|254828631|ref|ZP_05233318.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL N3-165]
 gi|254829975|ref|ZP_05234630.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 10403S]
 gi|254852678|ref|ZP_05242026.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-503]
 gi|254898567|ref|ZP_05258491.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes J0161]
 gi|254911943|ref|ZP_05261955.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes J2818]
 gi|254932415|ref|ZP_05265774.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
 gi|254936269|ref|ZP_05267966.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes F6900]
 gi|255025712|ref|ZP_05297698.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J2-003]
 gi|255030295|ref|ZP_05302246.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes LO28]
 gi|255520250|ref|ZP_05387487.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J1-175]
 gi|284801653|ref|YP_003413518.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284994795|ref|YP_003416563.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|290894517|ref|ZP_06557470.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL J2-071]
 gi|300765304|ref|ZP_07075288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL N1-017]
 gi|21263464|sp|Q8Y7K9|CLPX_LISMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61211533|sp|Q720F3|CLPX_LISMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763852|sp|B8DHN7|CLPX_LISMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491262|sp|C1L2H6|CLPX_LISMC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16410684|emb|CAC99346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes EGD-e]
 gi|46880763|gb|AAT04061.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47014210|gb|EAL05194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47017702|gb|EAL08496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes str. 4b H7858]
 gi|217333859|gb|ACK39653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes HCC23]
 gi|225876333|emb|CAS05042.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258601030|gb|EEW14355.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL N3-165]
 gi|258605996|gb|EEW18604.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL R2-503]
 gi|258608858|gb|EEW21466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes F6900]
 gi|284057215|gb|ADB68156.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5578]
 gi|284060262|gb|ADB71201.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           08-5923]
 gi|290555929|gb|EFD89490.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes
           FSL J2-071]
 gi|293583972|gb|EFF96004.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262]
 gi|293589904|gb|EFF98238.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes J2818]
 gi|293593910|gb|EFG01671.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria
           monocytogenes FSL J1-194]
 gi|300513987|gb|EFK41050.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL N1-017]
 gi|307570847|emb|CAR84026.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           monocytogenes L99]
 gi|313609092|gb|EFR84801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           monocytogenes FSL F2-208]
 gi|328468558|gb|EGF39558.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 1816]
 gi|328475113|gb|EGF45897.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes 220]
 gi|332311713|gb|EGJ24808.1| ATP-dependent Clp protease [Listeria monocytogenes str. Scott A]
          Length = 419

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKDDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPT 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E+++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|312796429|ref|YP_004029351.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
 gi|312168204|emb|CBW75207.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Burkholderia rhizoxinica HKI 454]
          Length = 410

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/404 (25%), Positives = 169/404 (41%), Gaps = 81/404 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPLEIRQILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E                      
Sbjct: 185 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLVE---------------------- 218

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     + V   G +K                      + D +  D+  ++   G 
Sbjct: 219 -------GTMASVPPQGGRKHP--------------------NQDFIQVDTTNILFICGG 251

Query: 247 VFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +K I  R    GIG               G+SV +K    + D    +      
Sbjct: 252 AF-DGLEKVITDRTEKTGIGF--------------GASVKSKQ---DRDAGEVLRDVEPE 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    IL + ++ L+ QY +L   E + L+    
Sbjct: 294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPT 353

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++ A+A  A+   +     GAR L++++E+ L D+ +    L+ 
Sbjct: 354 ALQAVAKKAIRRKT-----GARGLRSILEQALLDVMYELPTLKG 392


>gi|269219683|ref|ZP_06163537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269210925|gb|EEZ77265.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 419

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/421 (23%), Positives = 167/421 (39%), Gaps = 87/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGP 61
            PREI   L+ Y+IGQ  AKR +A+A+ N ++R +         D   ++   NILL+GP
Sbjct: 65  KPREIYEFLNEYVIGQDTAKRTLAVAVYNHYKRIRAQGGPKRSQDEEVQIGKSNILLLGP 124

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A + V+      
Sbjct: 125 TGTGKTYLAQSLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAADDDVK------ 178

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            R +  I   + I          S TR+V  + ++   +    I+  VA           
Sbjct: 179 -RAEVGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI--IEGTVASVPPQGG---- 231

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                                                  ++          +   +I  +
Sbjct: 232 ----------------------------------RKHPQQEYL-------QLDTSNILFI 250

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                  ++E   I +R    GIG   E    D      G+ V              ++ 
Sbjct: 251 CAGAFAGMEEI--ISSRTGRRGIGFGSELHVAD-----NGAEV--------------LSE 289

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE+ GR PV    + L + D   ILT+ ++ L+ QY+ + + +G+ L 
Sbjct: 290 ATPEDLHKFGLIPELVGRLPVVAATEELTEGDLIRILTEPKNALVRQYERMFELDGVRLQ 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
              +++  ++  A+   +     GAR L+++ME +L++  F      + + +V DA  V+
Sbjct: 350 IDGEALHEISREAIARGT-----GARGLRSIMESLLKEAMFEVPSRSDVEKIVFDAAAVK 404

Query: 421 L 421
            
Sbjct: 405 D 405


>gi|33151466|ref|NP_872819.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi
           35000HP]
 gi|46576468|sp|Q7VP79|CLPX_HAEDU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33147686|gb|AAP95208.1| ATP-dependent Clp protease, ATP-binding ClpX subunit [Haemophilus
           ducreyi 35000HP]
          Length = 418

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 173/424 (40%), Gaps = 89/424 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPT 62
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R              EL   NILL+GPT
Sbjct: 65  TPHQIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNALSHHQETNGVELGKSNILLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LAR    PF   + T  T+ GYVG +VE +I+ L+               
Sbjct: 125 GSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLLMKCNFD--------- 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
               +  AE  I+                            EID ++   S   S     
Sbjct: 176 ----AELAERGII-------------------------FIDEID-KITRKSESPSITRDV 205

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  +   V     +   +    +                 T+  D+ +++ 
Sbjct: 206 SGEGVQQALLKLIEGTVANINPQGSRKHPKGE-----------------TIAVDTSKILF 248

Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             G  F    DK+      + +GIG + E     L    +   +++ +  I  + ++   
Sbjct: 249 ICGGAFAG-LDKVVEARTHTQSGIGFAAE-----LKKDKDREDLTSLFKQIEPEDLVKF- 301

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE+ GR PV   L+ L+++    ILT  ++ +I QY+ L K EG+ L
Sbjct: 302 ----------GLIPELIGRLPVITPLQELDEAALIAILTKPKNAIITQYQALFKMEGVEL 351

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDA 416
            FT+D++ A+A  ++   +     GAR L++++E +L D  +    L+       + +  
Sbjct: 352 KFTKDALTAIAQKSIVRKT-----GARGLRSIVENLLLDTMYDLPTLKNSQGITKITVGK 406

Query: 417 EYVR 420
             V+
Sbjct: 407 GCVQ 410


>gi|227874922|ref|ZP_03993074.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35243]
 gi|269976477|ref|ZP_06183462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris 28-1]
 gi|306818246|ref|ZP_07451976.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|307701823|ref|ZP_07638837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris FB024-16]
 gi|227844499|gb|EEJ54656.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35243]
 gi|269935278|gb|EEZ91827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris 28-1]
 gi|304648985|gb|EFM46280.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|307613081|gb|EFN92336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus
           mulieris FB024-16]
          Length = 419

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/416 (25%), Positives = 169/416 (40%), Gaps = 84/416 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EI   L  Y+IGQ++AKRA+++A+ N ++R    +   D   E+   NILL+GPTG 
Sbjct: 63  TPHEIFDFLQMYVIGQENAKRALSVAVYNHYKRVRAMRRGEDSGMEMTKSNILLLGPTGT 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+++ R  +  
Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAERGIIY- 181

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 182 ------IDEIDKISRKGENASITRDVSGEGVQQALLKI--IEGTVASVPPQGG------- 226

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                               +D  +       ++  SI  +   
Sbjct: 227 -------------------------------RKHPHQDFIE-------INTSSILFIAAG 248

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE  K  AR      G    G     +                 +H    A    
Sbjct: 249 AFAGIDEIVK--ARLGQRSTGF---GSDLKSMK----------------EHGDLYAKVTP 287

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV  ++ +LN  D   +LT+ ++ ++ QY+ L + +G+ L FT+
Sbjct: 288 DDLHKFGLIPEFIGRLPVITNVSALNVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           ++I  +A VA    +     GAR L T+ME+ L  I F      +   V+I+ E V
Sbjct: 348 EAIREVARVAEKRGT-----GARSLSTLMEQTLAAIMFDLPSRDDVAEVIIEPECV 398


>gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 426

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 164/431 (38%), Gaps = 96/431 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +P EI + LD Y+IGQ  AK+ +++A+ N ++R                      EL   
Sbjct: 61  TPTEIKAFLDDYVIGQDQAKKVLSVAVYNHYKRIYQKKPAARPRPGVKAQGSEDVELQKS 120

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A   V
Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 180

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            ++ R  V                                         EID ++A    
Sbjct: 181 EKAARGIV--------------------------------------YIDEID-KIARKGD 201

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             S     GG  V    L                   ++     +      +    + V 
Sbjct: 202 TPSATRDVGGEGVQQALL-----------------KIIEGTRANVTPRGGKKYNQQEYVQ 244

Query: 235 RDSIQMVENYGIVF--LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            D+  ++   G  F  +D    I  R    G+G       R+   + E            
Sbjct: 245 VDTTNILFICGGAFHGIDGI--IKRRVGEKGLGFGARITHREERSVGE------------ 290

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                 +A           ++PE  GR P+   L  L + D  +ILT  ++ L+ QY++L
Sbjct: 291 -----LLAMAEPEDLMKFGMIPEFIGRLPMVATLNDLKEDDLVIILTQPKNALVKQYQKL 345

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
            + E + L F+++S+ A+A  A+  NS     GAR L+ +ME  + ++ +     +  K 
Sbjct: 346 FEIEKVKLTFSKESLRAIAREAMRRNS-----GARGLRAIMEDAMLEVMYDVPFREGVKE 400

Query: 412 VVIDAEYVRLH 422
             I    +  H
Sbjct: 401 CKITENVITKH 411


>gi|33592843|ref|NP_880487.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis
           Tohama I]
 gi|46576479|sp|Q7VXI6|CLPX_BORPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33572491|emb|CAE42063.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella
           pertussis Tohama I]
 gi|332382256|gb|AEE67103.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella
           pertussis CS]
          Length = 434

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 101/416 (24%), Positives = 168/416 (40%), Gaps = 81/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P EI + LD+Y+IGQ   KR +A+A+ N ++R +      DE  L   NI+L+GPTG G
Sbjct: 66  TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V +++R      
Sbjct: 126 KTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR------ 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A I  +E I          S TR+V  + ++   +  K I+  VA               
Sbjct: 180 AIIYIDE-IDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++         I   V   +  L +      +  D   +  I       
Sbjct: 227 -----GGRKHPNQDFVQVDTTNILFIVGGAFDGLEK------VIRDRTEKSGIGFSAA-- 273

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                    + A+       +  E    DL+                             
Sbjct: 274 ---------VRAKSERGVGELFSEAEPEDLIKF--------------------------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q+++L   EG  LD   D
Sbjct: 298 -----GLIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPD 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           ++ A++  A+   +     GAR L++++E  L D  +          VV++A  V 
Sbjct: 353 ALKAISRKALKRKT-----GARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVE 403


>gi|2674203|gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis thaliana]
          Length = 579

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 173/437 (39%), Gaps = 96/437 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   L++++IGQ+ AK+ +++A+ N ++R    +                  D   
Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V                                         E+D ++
Sbjct: 280 ADYNVAAAQQGIV--------------------------------------YIDEVD-KI 300

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              +  +       G  V    L  L   ++    K   +                    
Sbjct: 301 TKKAESLYISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD--------------- 345

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE-GVQRDLLPLVEGSSVSTKY 288
              +  D+  ++   G  F+D    I  R   + IG             +   +  S   
Sbjct: 346 --NIQIDTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTTAAVASNLM 403

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
            ++ T  +  IA G         L+PE  GRFPV V L +L ++    +LT+ ++ L  Q
Sbjct: 404 ETVETSDL--IAYG---------LIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQ 452

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK++ +   + L FTE ++  +A  A+  N+     GAR L+ ++E +L D  +   D  
Sbjct: 453 YKKMYQMNSVKLHFTESALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEG 507

Query: 409 -----EKTVVIDAEYVR 420
                 + VV+D E V 
Sbjct: 508 TGSDMIEAVVVDEEAVE 524


>gi|223044104|ref|ZP_03614143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus capitis SK14]
 gi|314933829|ref|ZP_07841194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus caprae C87]
 gi|222442498|gb|EEE48604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus capitis SK14]
 gi|313653979|gb|EFS17736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus caprae C87]
          Length = 420

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P+D   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSDDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 172 --DKAEKGII-------------------------YVDEID-KIARKSENTSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILFILGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              +DE   I  R     IG  S E  + D   L+E                        
Sbjct: 249 FDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI--------------------RP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              +   L+PE  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FTE
Sbjct: 287 EDLQSYGLIPEFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFTE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+++ A+   +     GAR L++++E  L DI +     +    VVI    +   I
Sbjct: 347 EALSAISEKAIERKT-----GARGLRSIIEEALIDIMYDVPSTENVSKVVITENTINEEI 401

Query: 424 G 424
            
Sbjct: 402 E 402


>gi|255994400|ref|ZP_05427535.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           saphenum ATCC 49989]
 gi|255993113|gb|EEU03202.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           saphenum ATCC 49989]
          Length = 427

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 171/420 (40%), Gaps = 84/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +PREI + L  Y++GQ+ A++ +A+A+ N ++R Q      D   E+   N++++GPTG 
Sbjct: 67  TPREIDAILGDYVVGQERARKVLAVAVYNHYKRIQKDKKAEDKTVEVQKSNVIMIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +  +  
Sbjct: 127 GKTLLAETLAKILKVPFAIADATTLTEAGYVGDDVENILLRLIQAADYNIPKAEKGIIY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +      IE    +   +      G
Sbjct: 186 ------IDEIDKIARMSENRSITRDVSGEGVQQALLKI----IEGTVANVPQTGGRKHPG 235

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             +   N S++                                                 
Sbjct: 236 QEMIPFNTSDVL---------------------------------------------FIC 250

Query: 245 GIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F D  DKI+ R  G   IG +    +       E + +   Y  +  + +L      
Sbjct: 251 GGAF-DGLDKIIKRRQGGSAIGFNASDTKE------ENAYLENLYADLRHEDLL------ 297

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GR PV+V L  L+++D   ILT+ ++ L+ QY++L K +G+ L F 
Sbjct: 298 -----HYGLIPEFIGRVPVKVSLDKLSETDLVKILTEPKNALVKQYEKLFKMDGVKLVFE 352

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLH 422
             ++  +A  A++ N+     GAR L+++ME  L D  F        +   +    +   
Sbjct: 353 NSALIEIAREAISRNT-----GARGLRSIMEEALSDAMFEIPSAKNIEKCTVSRNIIEGR 407


>gi|94987237|ref|YP_595170.1| ATP-dependent protease ATP-binding subunit ClpX [Lawsonia
           intracellularis PHE/MN1-00]
 gi|226706637|sp|Q1MQ78|CLPX_LAWIP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94731486|emb|CAJ54849.1| ATP-dependent protease Clp, ATPase subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 417

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 165/424 (38%), Gaps = 95/424 (22%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----RDELMPKNILLVGP 61
            +P+EI   LD Y+IGQ++AK+ +A+A+ N ++R      +       EL   N+LLVGP
Sbjct: 59  LTPQEIKERLDEYVIGQEEAKKILAVAVHNHYKRVFYAEKISSEHGDVELEKSNVLLVGP 118

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           +G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + +  
Sbjct: 119 SGSGKTLLAKTLAKILRVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDLDTASKGI 178

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +         + I          S TR+V  + ++   +      IE  + +        
Sbjct: 179 IY-------IDEIDKISRRSDGPSITRDVSGEGVQQALLKI----IEGTEANIPPKGGRK 227

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                   +N S +                                              
Sbjct: 228 HPQQEFIRMNTSNIL--------------------------------------------- 242

Query: 242 ENYGIVFLDEFDKIVA---RDSGNGIGVSREGVQRDLL-PLVEGSSVS--TKYGSINTDH 295
              G  F+   DKIV    R    G G    G +   L  L+E    +   ++G I    
Sbjct: 243 FIVGGAFIG-LDKIVEQRIRGGSMGFGAKVSGKKERPLGQLLEQVHPNDLVQFGLI---- 297

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                             PE  GR PV  H+  L++ D   +L + ++ L  QY++L + 
Sbjct: 298 ------------------PEFVGRIPVLTHVDDLSEEDLVRVLVEPKNALTRQYQKLFEL 339

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           + + L FT D++ A+A  A+   +     GAR L+ VME ++ DI +    +      + 
Sbjct: 340 DNVTLRFTSDALKAIAHKAIERKT-----GARGLRNVMESIMLDIMYKLPSMVGVKECVI 394

Query: 416 AEYV 419
            + V
Sbjct: 395 NDVV 398


>gi|148238400|ref|YP_001223787.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7803]
 gi|166215216|sp|A5GHS5|CLPX_SYNPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147846939|emb|CAK22490.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus
           sp. WH 7803]
          Length = 451

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 164/433 (37%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P++I + LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 84  KPQDIKAFLDQQVVGQEAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIG 143

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 144 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDLAQRG 203

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 204 II--------------------------------------YIDEID-KIARKSENPSITR 224

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +    I  
Sbjct: 225 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI---------------QIDTSQILF 269

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG                  + T+            A
Sbjct: 270 ICGGAFVGLD--DVVQKRMGRNAIGF-----------------MPTEGRGRGKATRDLQA 310

Query: 301 SGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +       P D     L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  
Sbjct: 311 AQVLRHLEPDDLVRYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSM 370

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L+F   +I+A+A  A    +     GAR L+ ++E ++ D+ +     ++  +  I
Sbjct: 371 DNVQLEFEPSAIEAIAQEAHRRKT-----GARALRGIVEELMLDLMYELPSRKDASSFTI 425

Query: 415 DAEYVRLHIGDFP 427
               V  H G   
Sbjct: 426 TRAMVEEHTGGKV 438


>gi|116872701|ref|YP_849482.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123463732|sp|A0AI71|CLPX_LISW6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116741579|emb|CAK20703.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 419

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R       +   EL   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEEEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 172 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 249 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKEDETYLSRV----VPEDLLKF------- 292

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   
Sbjct: 293 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPT 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E+++ ++ F      +    +I  +  R    
Sbjct: 348 ALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEE 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PQLQLED 409


>gi|42562485|ref|NP_564423.3| ATP-dependent Clp protease ATP-binding subunit ClpX, putative
           [Arabidopsis thaliana]
 gi|51536496|gb|AAU05486.1| At1g33360 [Arabidopsis thaliana]
 gi|53850505|gb|AAU95429.1| At1g33360 [Arabidopsis thaliana]
 gi|332193466|gb|AEE31587.1| ATP-dependent Clp protease [Arabidopsis thaliana]
          Length = 656

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 170/426 (39%), Gaps = 83/426 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------PADLRDELMPKN 55
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                 D   EL   N
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 310

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ VA   V+
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 370

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +++  V            +D +   T  + +  + R                       
Sbjct: 371 AAQQGIVY-----------IDEVDKITKKAESLNISR----------------------- 396

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                      V    + +   K++       + +  +        D     ID   +  
Sbjct: 397 ----------DVSGEGVQQALLKLLEGTI---VNVPGKGARKHPRGDHIQ--IDTKDI-- 439

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
                +   G  F+D    IV R   + IG             V   ++        T  
Sbjct: 440 -----LFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSGAI--------TSS 486

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L     A        L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L   
Sbjct: 487 LLESVESA--DLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKLFSM 544

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L FTE +++ ++  A+  N+     GAR L+ ++E +L +  F   D ++    ID
Sbjct: 545 NNVKLHFTEKALEIISKQAMVKNT-----GARGLRALLESILTEAMFEIPDDKKGDERID 599

Query: 416 AEYVRL 421
           A  V  
Sbjct: 600 AVIVDE 605


>gi|172041058|ref|YP_001800772.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           urealyticum DSM 7109]
 gi|171852362|emb|CAQ05338.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           urealyticum DSM 7109]
          Length = 424

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 171/427 (40%), Gaps = 98/427 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
           +P EI + LD+Y+IGQ DAKR +A+A+ N ++R Q+          D   EL   NIL++
Sbjct: 61  TPSEISAFLDKYVIGQDDAKRTLAVAVYNHYKRIQVEEANALARRNDDEVELSKSNILML 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++R
Sbjct: 121 GPTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQSADFDVEKAQR 180

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +            
Sbjct: 181 GIIY-------IDEVDKIGRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGG---- 229

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++       K +   V   +  L +      +  D   +  + 
Sbjct: 230 -------------RKHPNQEFIQFDTKNVLFIVAGAFAGLEK------VIEDRRGKKGLG 270

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                                                    G+ V++K   +        
Sbjct: 271 F----------------------------------------GAEVTSKNDQVK------- 283

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
               F    P D     L+PE+ GR PV  H+  L++     +LT+ ++ L+ QY+ L +
Sbjct: 284 --DPFQYVEPEDLVKFGLIPEVIGRLPVVTHVGHLDEDALVQVLTEPKNALVRQYQRLFE 341

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            + + L F + ++  +A  A+   +     GAR L+++MER+L  I +S  + ++   V+
Sbjct: 342 MDNVQLAFEDGALREVARQALARET-----GARGLRSIMERILLPIMYSIPEEEDIAEVL 396

Query: 414 IDAEYVR 420
           I     +
Sbjct: 397 ITEAAAK 403


>gi|297587290|ref|ZP_06945935.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 53516]
 gi|297575271|gb|EFH93990.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna
           ATCC 53516]
          Length = 411

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 172/417 (41%), Gaps = 82/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+I Q++ K+A+A+A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 61  KPIEIKDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LA++   PF   + T  TE GYVG +VE +I  L+  A   +            
Sbjct: 121 TLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDI------------ 168

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++   S + S      G  
Sbjct: 169 -EKAEQGII-------------------------YIDEID-KITRKSENPSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L                   V+     +      +  + + +  D+  ++   G 
Sbjct: 202 VQQALL-----------------KIVEGTICNVPPQGGRKHPNQEYIQVDTKNILFIVGG 244

Query: 247 VFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            F D  +KI+  R     IG   +  + +   + E                LF       
Sbjct: 245 AF-DGLEKIIEKRTETKSIGFGADLGENEHKRISE----------------LFKDIRPED 287

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED
Sbjct: 288 LIK-FGLIPEFVGRIPVLVTLDELDEQALIKILLEPKNAVIKQYQELFKMDDVELEFDED 346

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ++ A+A +A +  +     GAR L+T++E+ L +I F     Q+   V++  E V  
Sbjct: 347 ALKAIAKLAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVILTKESVLE 398


>gi|297851760|ref|XP_002893761.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339603|gb|EFH70020.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 660

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 170/426 (39%), Gaps = 83/426 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------PADLRDELMPKN 55
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                 D   EL   N
Sbjct: 255 TPKEICKWLDKFVIGQTRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 314

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ VA   V+
Sbjct: 315 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 374

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +++  V            +D +   T  + +  + R                       
Sbjct: 375 AAQQGIVY-----------IDEVDKITKKAESLNISR----------------------- 400

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                      V    + +   K++       + +  +        D     ID   +  
Sbjct: 401 ----------DVSGEGVQQALLKLLEGTI---VNVPGKGARKHPRGDHIQ--IDTKDI-- 443

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
                +   G  F+D    IV R   + IG             V   ++        T  
Sbjct: 444 -----LFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSGAI--------TSS 490

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L     A        L+PE  GRFP+ V L +L +     +L + ++ L  QYK+L   
Sbjct: 491 LLESVESA--DLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKLFSM 548

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
             + L FTE +++ ++  A+  N+     GAR L+ ++E +L +  F   D ++    ID
Sbjct: 549 NNVKLHFTEKALEIISKQAMVKNT-----GARGLRALLESILTEAMFEIPDDKKGDERID 603

Query: 416 AEYVRL 421
           A  V  
Sbjct: 604 AVIVDE 609


>gi|119953394|ref|YP_945603.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia turicatae
           91E135]
 gi|119862165|gb|AAX17933.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia
           turicatae 91E135]
          Length = 435

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 114/415 (27%), Positives = 180/415 (43%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R       D   EL   NILLVGPTG G
Sbjct: 70  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFKGNKRDNGVELEKSNILLVGPTGSG 129

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++++LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 130 KTLLAKKLAAEMNVPFAMADATTLTEAGYVGEDVENILLKLIHAADGDV----------- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE  I+                            EID ++A    ++S      G 
Sbjct: 179 --SFAERGII-------------------------YIDEID-KIAKKGENVSITRDVSGE 210

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +    + +   K  R    +C                 ++  +I  +    
Sbjct: 211 GVQQSLLK-IIEGTIANVPPKGGRKHPYECTI--------------EINTQNILFICGGA 255

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+    I  R + + IG S  G +        G   S KY  +  D + F       
Sbjct: 256 FVGLENI--IKKRINKSSIGFSSAGRKD------SGEINSLKYLEME-DLVKF------- 299

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L K D   IL + E++++ QY  + K + + L F  D
Sbjct: 300 -----GLIPEFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYCHMFKMDNVDLLFERD 354

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
           ++DA+A+ A+  N+     GAR L++++E +L+D+ F      Q K V++  E V
Sbjct: 355 ALDAIAEEAMLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 404


>gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 434

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/422 (23%), Positives = 165/422 (39%), Gaps = 79/422 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI   LD+Y+IGQ +AK+ +++A+ N ++R  +  D   EL   NIL++GPTG GKT
Sbjct: 67  KPKEIKEFLDQYVIGQDEAKKVLSVAVYNHYKRILMGGDSDVELQKSNILMLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +        R Q  
Sbjct: 127 LLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDID-------RAQCG 179

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I   + I         TS TR+V  + ++   +    I+  VA            G    
Sbjct: 180 IIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI--IEGTVASVPPQ------GGRKHP 231

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               +    S ++               +  L +      I    + + SI         
Sbjct: 232 HQEFIQIDTSNIL---------FICGGAFDGLEK------IIESRIGKKSIGF------- 269

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                        G  +   +E    +LL  V       K+G I      FI     +VS
Sbjct: 270 -------------GADVFGQKETDLGELLRQVLPEDF-VKFGLI----PEFIGRVPVNVS 311

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                             L  L++     IL + +S L+ QY+ L + +G+ L F +D++
Sbjct: 312 ------------------LNPLDEGALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDAL 353

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDF 426
            A+A  A+   +     GAR L+ +ME V+ D+ +      +    +I  + V       
Sbjct: 354 IAIAKKALERKT-----GARGLRAIMEGVIMDLMYEIPSQTDVSECLITKDVVEGKEKPM 408

Query: 427 PS 428
             
Sbjct: 409 IE 410


>gi|118602250|ref|YP_903465.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567189|gb|ABL01994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 421

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/415 (24%), Positives = 181/415 (43%), Gaps = 82/415 (19%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTG 63
           +N++P+++ + L+ Y+IGQ  AK+ +++A+ N ++R +      + EL   NIL+VGPTG
Sbjct: 58  WNYTPKQLNNFLNDYVIGQDHAKKVLSVAVYNHYKRLRSDYISNKVELDKSNILMVGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LAR+   PF   + T  TE GYVG +VE +I++L+       + ++R    
Sbjct: 118 SGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNLLSKCDFDPKRAQR---- 173

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
               I   + I        + S TR+V  + ++      K I+  VA             
Sbjct: 174 ---GIIFIDEIDKISRRSDSPSITRDVSGEGVQQA--MLKLIEGTVASVPPQGG------ 222

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +                   + +T+  D+ +++  
Sbjct: 223 ------------------------RKHP-----------------NQETIDVDTSKILFI 241

Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            G  F D  DKI+ R      GIG + +   +                   T   LF   
Sbjct: 242 CGGAF-DGLDKIINRRVEKVTGIGFAADVKDQKEKK---------------TLSDLFALI 285

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
               + +   L+PE  GR PV+  L  L+++    IL + ++++I Q++E+   EG+ L 
Sbjct: 286 QPEDLIK-FGLIPEFVGRLPVQTALSELDETALVKILIEPKNSVIKQFQEIFFMEGVKLI 344

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
           F   S+ A+A +A+        IGAR L++++E +L D  F    L + T V+ID
Sbjct: 345 FRNPSLLAIARLAIKRK-----IGARGLRSILEDLLLDTMFELPSLLDVTEVIID 394


>gi|312131372|ref|YP_003998712.1| ATP-dependent clp protease ATP-binding subunit clpx [Leadbetterella
           byssophila DSM 17132]
 gi|311907918|gb|ADQ18359.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leadbetterella
           byssophila DSM 17132]
          Length = 421

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 179/421 (42%), Gaps = 81/421 (19%)

Query: 5   FNFSP-REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPT 62
           F+  P +E+   LDR+IIGQ +AK+ + +A+ N ++R   P+   D  +   NI++VG T
Sbjct: 65  FDLKPPQELKKYLDRFIIGQDEAKKVLTVAVYNHYKRLMQPSTGDDVNIEKSNIIMVGET 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R +A++   PF   + T  TE GYVG ++E I+  L+  A   V +++R  V
Sbjct: 125 GTGKTYLARTIAKMLEVPFAIADATVLTEAGYVGEDIESILTRLLQAADYNVEQAQRGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                                                    EID ++A  S + S     
Sbjct: 185 --------------------------------------YIDEID-KIARKSDNPSITRDV 205

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G  V    L  L   ++G   +   +                   D   V  ++  ++ 
Sbjct: 206 SGEGVQQGLLKLLEGSIVGVPPQGGRKHP-----------------DQQLVQVNTENILF 248

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F      I  R + + IG  +EG                K  ++ +D  L +   
Sbjct: 249 ICGGAFDGIARHIAKRINTSPIGFRQEG----------------KGVNLQSDESL-MRYV 291

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                +   L+PE+ GR P+  +L  L++S  + ILT+ ++ L+ QYK+L + E I L+F
Sbjct: 292 TQQDLKSFGLIPELIGRLPLLTYLNPLDRSTLKRILTEPQNALVKQYKKLFQMENISLEF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            E ++D + D AV  N     +GAR L+++ E +L D  F    D   K  ++  +Y + 
Sbjct: 352 EEAALDYIVDQAVKFN-----LGARGLRSICESILTDAMFELPSDKSIKEFLVTLDYAKS 406

Query: 422 H 422
            
Sbjct: 407 K 407


>gi|210617499|ref|ZP_03291602.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787]
 gi|210149286|gb|EEA80295.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787]
          Length = 478

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 170/421 (40%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y+IGQ+ AK+A+++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 129 PHKIKAQLDDYVIGQEYAKKAISVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKTY 188

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R  +      
Sbjct: 189 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAERGII------ 242

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 243 -----FIDEIDKIAKKKNTNQR---------------DVSGESVQQGMLKLLEGSDVEVP 282

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L +   +RL       + S+  +       
Sbjct: 283 VGANSKNAMVPLTTVNTKNILFICGGAFPDLEQIIKERLN-----KQASMGFIA------ 331

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   +   ++   +V                       R
Sbjct: 332 -DLKDK-----------------YNNDKDILSKVTV--------------------EDIR 353

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ L++     IL + ++ ++ QY++L++ + + L+F E+++ 
Sbjct: 354 NFGMIPEFIGRLPIIFTLQGLDEDMLVKILKEPKNAILKQYQKLLELDEVKLNFDEEALH 413

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+       D GAR L++++E  + DI +    D     V I  EY+    G   
Sbjct: 414 AIARKAMK-----KDTGARALRSIIEEFMLDIMYEIPKDDNIGQVTITKEYIEGTGGPLI 468

Query: 428 S 428
           +
Sbjct: 469 A 469


>gi|153005127|ref|YP_001379452.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028700|gb|ABS26468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 105/429 (24%), Positives = 167/429 (38%), Gaps = 92/429 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-------------DELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R       R              EL   
Sbjct: 62  TPAEIKSFLDDYVVGQDKAKKVLSVAVYNHYKRVYSKKPARPQRPGQTRTGSDDVELQKS 121

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A   V
Sbjct: 122 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHAADYDV 181

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            ++ R  V         + I        + S TR+V  + ++   +      IE    + 
Sbjct: 182 EKAARGIVYV-------DEIDKIARKGDSPSPTRDVGGEGVQQALLKI----IEGTRANV 230

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                          ++ S +                V   +  L +           + 
Sbjct: 231 TPRGGKKYNQQEYIQVDTSNIL-------------FIVGGAFCGLEQV----------IR 267

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           R +      +G        KI  ++         E    +LL  VE S +  K+G I   
Sbjct: 268 RRAGVKALGFGA-------KIERKE---------EASLGELLARVEPSDL-VKFGMI--- 307

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                              PE  GR P+   L  L++ D   ILT  ++ L  QY +L +
Sbjct: 308 -------------------PEFVGRLPIIATLADLSEEDLVTILTQPKNALTKQYVKLFE 348

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            E + L FT++S+ A A  A+   S     GAR L+ ++E+ + DI +     +  K   
Sbjct: 349 LEKVKLSFTKESLRATAREAMRRKS-----GARGLRAILEQAMLDIMYDVPYREGVKECK 403

Query: 414 IDAEYVRLH 422
           I    +   
Sbjct: 404 ITDGVILNK 412


>gi|70990236|ref|XP_749967.1| ATP-dependent Clp protease [Aspergillus fumigatus Af293]
 gi|66847599|gb|EAL87929.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus Af293]
 gi|159130447|gb|EDP55560.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus A1163]
          Length = 638

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 177/485 (36%), Gaps = 90/485 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                 
Sbjct: 110 TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEEKAELLARQARREALEHH 169

Query: 51  ------------------------------------LMPKNILLVGPTGVGKTAISRRLA 74
                                               L   NILL+GP+GVGKT +++ LA
Sbjct: 170 PAEDEFPGQQRTVHLPTSPKSTTSNEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKTLA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASIN 129
           R+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+  
Sbjct: 230 RVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAK 289

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                   + G+       ++        +   +      + T S   + +  G +    
Sbjct: 290 VSHG--KDVSGEGVQQALLKIIEGTTVQVQAKQERNAHRTSGTPSSYPSNNPFGNSPFSQ 347

Query: 190 LNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                   K  + + R   I       +  L +      + MD +   S+   +      
Sbjct: 348 SPTGNAPQKGEIYNVRTDNILFIFSGAFVGLHK------VIMDRISHGSMGFGQPVRSQS 401

Query: 249 L---DEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                  D +    +       G   E + +  LP    +S ++  G    +   F    
Sbjct: 402 SPTHRPGDPLATTPNQPVPILPGSEEEALYKKHLPFFTAASPTSPDG----EPPYF---N 454

Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           A  +  P DL     +PE+ GR PV   L +L++     ILT+  ++L+ QY  L    G
Sbjct: 455 ALDLLNPTDLQNYGFIPELIGRIPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSLSG 514

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L FT  ++  +A  A  + +     GAR L+T ME +L D  F       K V+I   
Sbjct: 515 IELRFTTPALHKVAANAFAMGT-----GARALRTEMENILSDAMFETPGSSVKFVLITEA 569

Query: 418 YVRLH 422
                
Sbjct: 570 VADRK 574


>gi|325066965|ref|ZP_08125638.1| ATP-dependent protease ATP-binding subunit ClpX [Actinomyces oris
           K20]
          Length = 433

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/419 (24%), Positives = 176/419 (42%), Gaps = 81/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPT
Sbjct: 63  KPQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +  +
Sbjct: 123 GTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEKGII 182

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +   E            +    P
Sbjct: 183 Y-------IDEIDKIGRKAENPSITRDVSGEGVQQALLKIIE----------GTTASVPP 225

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                                    ++  +       +   +I  + 
Sbjct: 226 GGG------------------------------RKHPHQEFLE-------IDTTNILFIA 248

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 ++E  +   +   +G  +   G Q      + GS+ S           +F +  
Sbjct: 249 AGAFAGIEEIVR-QRQRKESGAQMVGFGAQ------LTGSTASQD---------VFTSPV 292

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ 
Sbjct: 293 RPEDLHKFGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELEL 352

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           T+ +I+A+A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 353 TDAAIEAVASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406


>gi|217076754|ref|YP_002334470.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho
           africanus TCF52B]
 gi|217036607|gb|ACJ75129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho
           africanus TCF52B]
          Length = 407

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 171/417 (41%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I +ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   N++L+GPTG GK
Sbjct: 58  KPSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSDIDFDDVEIEKSNVILIGPTGSGK 117

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R LA++   PF   + T  TE GYVG +VE +I  L++V    +  ++   +    
Sbjct: 118 TLLARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEVTNFDIERAQYGII---- 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 174 ----------------------------------YIDEID-KIARKSPNPSITRDVSGEG 198

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+                  V   +I  +     
Sbjct: 199 VQQALLKIVEGTIANVPPQGGRKHPYQEFLK---------------VDTSNILFIVGGAF 243

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++E   I  R   + +G +     +  + L E           +      +  G    
Sbjct: 244 DGIEEI--IKRRIQSSALGFNAPVKSKKDMRLGE--------ILSHVTPEDLVQYG---- 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L+ L + D   ILT+ ++ ++ QYK+L   + + L+ TE++
Sbjct: 290 -----LIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLLDNVELEVTEEA 344

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLH 422
           + A++  A+   +     GAR L++V E V+ D  F   DL   + V++  E V   
Sbjct: 345 LRAISRKALERGT-----GARALKSVFEEVMIDAMFELPDLNNIEKVIVTEECVTNK 396


>gi|212636026|ref|YP_002312551.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
 gi|226706596|sp|B8CRF6|CLPX_SHEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|212557510|gb|ACJ29964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           piezotolerans WP3]
          Length = 423

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 159/400 (39%), Gaps = 77/400 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 65  TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLKNASPKDGVELGKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 125 TLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ----------- 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     +++I+                 
Sbjct: 225 ----GGRKHPQQEFLQVDTSKILFVCGGAFAGL-----EKVIEQ---------------- 259

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                         G GIG   E         +  + +  +      D + F        
Sbjct: 260 ----------RSHVGTGIGFGAEVKGEADKATISDTLLQVE----PEDLVKF-------- 297

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+ +    IL++ ++ +  Q+  L + E + L+F ED+
Sbjct: 298 ----GLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFEMEDVELEFREDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
           + A+A  A    +     GAR L++++E +L DI +    
Sbjct: 354 LKAIALKAQTRKT-----GARGLRSIVEGILLDIMYDLPS 388


>gi|253579880|ref|ZP_04857148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848879|gb|EES76841.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 472

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 158/413 (38%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD+Y+IGQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 119 PHKIKETLDQYVIGQEKAKKVMSVAVYNHYKRVATDTMDEIEIEKSNMLMIGPTGCGKTY 178

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 179 LVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 232

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 233 -----FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGMLKLLEGSEVEVP 272

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   + I       +P+L     +RL    ++              +
Sbjct: 273 VGANSKNAMVPLVTVNTRNILFICGGAFPDLENIIKERLNKQASI------------GFY 320

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   D   L + +                         R
Sbjct: 321 ADLKDK----------------YDNDPHLLQKVTV---------------------EDIR 343

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L  LN+     IL + ++ ++ QY++L+  + + L+F + ++ 
Sbjct: 344 SFGMIPEFIGRLPIIFTLDGLNEDMLVKILQEPKNAILKQYQKLLALDEVKLEFEDGALH 403

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+A  A+       D GAR L+ ++E  + DI +    D     VVI  EY+ 
Sbjct: 404 AIAAKALER-----DTGARALRAILEEYMLDIMYEIPKDDSIGEVVITREYIE 451


>gi|306836716|ref|ZP_07469679.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49726]
 gi|304567394|gb|EFM42996.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 431

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 167/427 (39%), Gaps = 91/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDELMPKN 55
            P +I S LD+Y+IGQ  AKR +++A+ N ++R +                   E+   N
Sbjct: 67  KPSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSN 126

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           IL++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V 
Sbjct: 127 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVE 186

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            ++R  +         + +          S TR+V  + ++   +   E  +        
Sbjct: 187 RAQRGIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGG 239

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                             +  ++         I   V   +  L +      +  D V +
Sbjct: 240 -----------------RKHPNQEFIQLDTSNILFIVAGAFAGLDQ------VIADRVGK 276

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
             +                      G  +G   E  + DL   V    +  K+G I    
Sbjct: 277 KGVGF--------------------GAKLGTEDEREKVDLFSQVRPEDL-VKFGLI---- 311

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                             PE  GR PV   + +L++     +LT+ +++L+ QY  L + 
Sbjct: 312 ------------------PEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEM 353

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           +   L   + ++DA+A++A+   +     GAR L+ ++E +L  + F   D ++ + V I
Sbjct: 354 DDCELHMDDGALDAIAELALERKT-----GARGLRAILEELLVPVMFELPDREDISAVHI 408

Query: 415 DAEYVRL 421
            AE V  
Sbjct: 409 TAECVTQ 415


>gi|116071741|ref|ZP_01469009.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
 gi|116065364|gb|EAU71122.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp.
           BL107]
          Length = 450

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 165/425 (38%), Gaps = 80/425 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P EI S LD+ ++GQ  AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPLEIKSFLDQQVVGQNAAKKLMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 143 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +   Q C                 +  D+ Q+
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDC-----------------IQIDTSQI 266

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F+   D +  R   N IG       R           +    ++  D ++   
Sbjct: 267 LFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRNRTNRDLQAAQVLRNLEPDDLV--- 323

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L++     ILT+    L+ Q++ L+  + + L
Sbjct: 324 --------KYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQL 375

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
           +F +D+I A+A  A    +     GAR L+ ++E ++ D+ +        K   +    V
Sbjct: 376 EFADDAITAIAQEAHRRKT-----GARALRGIIEEIMLDLMYDLPSQSSVKDFTVTRAMV 430

Query: 420 RLHIG 424
             H G
Sbjct: 431 EEHTG 435


>gi|302379712|ref|ZP_07268197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234237|ref|ZP_07320883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna BVS033A4]
 gi|302312619|gb|EFK94615.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494778|gb|EFL54538.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia
           magna BVS033A4]
          Length = 411

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 166/416 (39%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+I Q++ K+A+A+A+ N ++R      +   EL   NILLVGPTG GK
Sbjct: 61  KPIEIKDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LA++   PF   + T  TE GYVG +VE +I  L+  A   + ++ +  +    
Sbjct: 121 TLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIY--- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I          N    GG  
Sbjct: 178 ----IDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTI---------CNVPPQGGRK 224

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  ++          + I   V   +  L +                         
Sbjct: 225 HPNQEYIQV--------DTRNILFIVGGAFEGLEKI------------------------ 252

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                   I  R     IG   +    +   + E                LF       +
Sbjct: 253 --------IERRTETKSIGFGADLGDNEHKKISE----------------LFKDIRPEDL 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV V L  L++     IL + ++ +I QY+EL K + + L+F ED+
Sbjct: 289 IK-FGLIPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + A+A +A +  +     GAR L+T++E+ L +I F     Q+   V++  E V  
Sbjct: 348 LKAIAKLAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVILTKESVLE 398


>gi|237785949|ref|YP_002906654.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|259491254|sp|C4LJV6|CLPX_CORK4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237758861|gb|ACR18111.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 422

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/421 (23%), Positives = 168/421 (39%), Gaps = 86/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            P +IV  L  Y+IGQ  AKR +A+A+ N ++R Q        +D   E+   NIL++GP
Sbjct: 64  KPSQIVDFLGDYVIGQDAAKRTLAVAVYNHYKRIQADENDHHKSDDDIEIAKSNILMLGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  
Sbjct: 124 TGSGKTYLAQTLARMLDVPFAMTDATSLTEAGYVGEDVENILLKLLQAADFDVDRAQRGI 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +         + +          S TR+V  + ++   +   E  +              
Sbjct: 184 IY-------IDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG------ 230

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                       +  ++       K +   V   +  L +      +  +   +  +   
Sbjct: 231 -----------RKHPNQEFIQLDTKNVLFIVAGAFAGLEK------VIGERRGKQGLGFG 273

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
            N           + +++       S   VQ + L          K+G I          
Sbjct: 274 AN-----------VSSKEENELDAFSY--VQPEDL---------VKFGLI---------- 301

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                       PE  GR PV   +  L++     +LT+ +++L+ QY  L+  +G+ L 
Sbjct: 302 ------------PEFIGRLPVVATVNDLDREALVRVLTEPKNSLVKQYSRLLDMDGVTLT 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
             E +++A+AD A+   +     GAR L+ ++E +L  + F   D ++ T VVI  E V 
Sbjct: 350 MEEGALNAIADKAIERGT-----GARGLRAILEEILGPVMFEVPDSEDVTEVVISEECVT 404

Query: 421 L 421
            
Sbjct: 405 E 405


>gi|227503051|ref|ZP_03933100.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49725]
 gi|227076112|gb|EEI14075.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           accolens ATCC 49725]
          Length = 428

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 167/427 (39%), Gaps = 91/427 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDELMPKN 55
            P +I S LD+Y+IGQ  AKR +++A+ N ++R +                   E+   N
Sbjct: 64  KPSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSN 123

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           IL++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V 
Sbjct: 124 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVE 183

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            ++R  +         + +          S TR+V  + ++   +   E  +        
Sbjct: 184 RAQRGIIYV-------DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGG 236

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                             +  ++         I   V   +  L +      +  D V +
Sbjct: 237 -----------------RKHPNQEFIQLDTSNILFIVAGAFAGLDQ------VIADRVGK 273

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
             +                      G  +G   E  + DL   V    +  K+G I    
Sbjct: 274 KGVGF--------------------GAKLGTEDEREKVDLFSQVRPEDL-VKFGLI---- 308

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                             PE  GR PV   + +L++     +LT+ +++L+ QY  L + 
Sbjct: 309 ------------------PEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEM 350

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           +   L   + ++DA+A++A+   +     GAR L+ ++E +L  + F   D ++ + V I
Sbjct: 351 DDCELHMDDGALDAIAELALERKT-----GARGLRAILEELLVPVMFELPDREDISAVHI 405

Query: 415 DAEYVRL 421
            A+ V  
Sbjct: 406 TADCVTQ 412


>gi|261194559|ref|XP_002623684.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081]
 gi|239588222|gb|EEQ70865.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081]
          Length = 615

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 184/476 (38%), Gaps = 80/476 (16%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------Q 41
            +P+ +   LD++++GQ  AK+ +++A+ N ++R                          
Sbjct: 94  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELRAQQARRQQRTI 153

Query: 42  QLPADLRDE---------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86
                  D+               L   NILL+GP+GVGKT +++ LAR+   PF   + 
Sbjct: 154 HTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDC 213

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGK 141
           T FT+ GY+G + +  +  L+  A   V ++ R     DEV         ++I  A V  
Sbjct: 214 TPFTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV---------DKIATAKVSH 264

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
               +   V +  L+  E +  +I  +   ++            S         F+    
Sbjct: 265 GKDVSGEGVQQALLKIIEGTTIQIQAKPERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPP 324

Query: 202 SGRKKKIRMSVQKCYPELMRDES----DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
               K    +V+      +   +    ++LI MD + R SI   +       + F    A
Sbjct: 325 GSSGKAEVYNVRTDNILFIFSGAFVGLNKLI-MDRISRGSIGFGQPVRASS-NSFSSHNA 382

Query: 258 RDSGNG------IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
             + +        G   E + +  LP    + + +  G+ + +   F       +  P D
Sbjct: 383 SHAASTPPIPILPGSEEEALYKKHLPFFTPAPLPSGSGA-DEEPTYF---NPLDLLTPPD 438

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR P+   L  L       ILT+  ++L+ QY  L    GI L FT  +
Sbjct: 439 LQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPA 498

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           +  +A+ A+++ +     GAR L+T ME +L D  F A     K V++        
Sbjct: 499 LHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLVTEAVAARK 549


>gi|119497351|ref|XP_001265434.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL
           181]
 gi|119413596|gb|EAW23537.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL
           181]
          Length = 591

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 176/487 (36%), Gaps = 92/487 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------------------------QL 43
           +P+ +   LD++++GQ  AK+ +++A+ N ++R                           
Sbjct: 61  TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLARRARRQALEHH 120

Query: 44  PADLRDE-------------------------------LMPKNILLVGPTGVGKTAISRR 72
           PA+                                   L   NILL+GP+GVGKT +++ 
Sbjct: 121 PAEDEFPGQQRTVHLPTSPKSTTSNPDEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKT 180

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS 127
           LAR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+
Sbjct: 181 LARVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKLAA 240

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                     + G+       ++        +   +      + T S   + +  G    
Sbjct: 241 AKVNHG--KDVSGEGVQQALLKIIEGTTVQVQAKQERNAHRTSGTPSSYPSNNPLGNPPF 298

Query: 188 GILNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     K  + + R   I       +  L +      + MD +   S+   +    
Sbjct: 299 SQSPTGNAPQKGEIYNVRTDNILFIFSGAFVGLHK------VIMDRISHGSMGFGQPVRS 352

Query: 247 VFL---DEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                    D +    +       G   E + +  LP    +S ++  G    +   F  
Sbjct: 353 QSSPTHRPGDPLATTSNQPVPILPGSEEEALYKKHLPFFTAASPTSPDG----EPPYF-- 406

Query: 301 SGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
             A  +  P DL     +PE+ GR PV   L +L++     ILT+  ++L+ QY  L   
Sbjct: 407 -NALDLLNPTDLQNYGFIPELIGRIPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSL 465

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
            GI L FT  ++  +A  A  + +     GAR L+T ME +L D  F       K V+I 
Sbjct: 466 SGIELRFTTPALHKVAANAFAMGT-----GARALRTEMENILSDAMFETPGSSVKFVLIT 520

Query: 416 AEYVRLH 422
                  
Sbjct: 521 EAVADRK 527


>gi|320534810|ref|ZP_08035229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320132989|gb|EFW25518.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 440

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 177/419 (42%), Gaps = 81/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPT
Sbjct: 70  KPQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPT 129

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +  +
Sbjct: 130 GTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEKGII 189

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +   E            +    P
Sbjct: 190 Y-------IDEIDKIGRKAENPSITRDVSGEGVQQALLKIIE----------GTTASVPP 232

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                                    ++  +       +   +I  + 
Sbjct: 233 GGG------------------------------RKHPHQEFLE-------IDTTNILFIA 255

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 ++E   IV +      G    G          G+ +++  GS +    +F A  
Sbjct: 256 AGAFAGIEE---IVRQRQRKESGAQMVGF---------GAQLTSGTGSQD----VFTAPV 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ 
Sbjct: 300 RPEDLHKFGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELEL 359

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           T+ +I+A+A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 360 TDAAIEAVASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADSVR 413


>gi|187918472|ref|YP_001884035.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia hermsii
           DAH]
 gi|119861320|gb|AAX17115.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia
           hermsii DAH]
          Length = 433

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 177/415 (42%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R       +   EL   N+LLVGPTG G
Sbjct: 68  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFRGNKKESGVELEKSNVLLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++++LA     PF   + T  TE GYVG +VE I+  L+  A   V  + R  V   
Sbjct: 128 KTLLAKKLADEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAANGDVSFAERGIV--- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A    ++S      G 
Sbjct: 185 -----------------------------------YIDEID-KIAKKGENVSITRDVSGE 208

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   +     K   +   ++                  ++   I  +    
Sbjct: 209 GVQQSLLKIIEGTIANIPPKGGRKHPYEETI---------------EINTQDILFICGGA 253

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+    I  R + + IG S  G Q          + S KY  +  D + F       
Sbjct: 254 FVGLENI--IKRRINKSSIGFSSVGKQD------SRENNSLKYLEME-DLVKF------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L K D   IL + E++++ QY  + K + + L F  D
Sbjct: 298 -----GLIPEFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYYHMFKMDNVELVFERD 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
           +++A+A+ A+  N+     GAR L++++E +L+D+ F      Q K V++  E V
Sbjct: 353 ALNAIAEEAMLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 402


>gi|145589118|ref|YP_001155715.1| ATP-dependent protease ATP-binding subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|226706594|sp|A4SXD7|CLPX_POLSQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145047524|gb|ABP34151.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 453

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 182/459 (39%), Gaps = 111/459 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRD---- 49
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R Q               P +  D    
Sbjct: 67  TPHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKES 126

Query: 50  -----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
                      EL   NILL+GPTG GKT +++ LAR+   PF+  + T  TE GYVG +
Sbjct: 127 KLPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           VE II+ L+      V +++R  V         + I          S TR+V  + ++  
Sbjct: 187 VENIIQKLLQACDYNVEKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQA 239

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
            +   E                                + V   G +K            
Sbjct: 240 LLKLVE-----------------------------GTMASVPPQGGRKHP---------- 260

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLP 277
                     + D +  D+  ++   G  F D  +K I  R +  GIG          +P
Sbjct: 261 ----------NQDFLQVDTTNILFICGGAF-DGLEKVIQQRTAKTGIGF------NATVP 303

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             +   VS     +  + ++              L+PE+ GR PV   L  L++     I
Sbjct: 304 GKDERGVSDLLIEVEPEDLIKF-----------GLIPELIGRLPVVATLAQLDEEALIQI 352

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L+ QY+ L+  EG  L+   +++ A+A  A+   +     GAR L++++E  L
Sbjct: 353 LTEPKNALVKQYQALLTMEGSELEVRREALSAIAKKAIARKT-----GARGLRSILEGSL 407

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLHIGD-FPSETDMYH 434
            D+ +    L+  + VVID   +          + D+  
Sbjct: 408 MDVMYDLPSLKNVQKVVIDESSIAEGGKPLLVYKQDLDQ 446


>gi|302669568|ref|YP_003829528.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394041|gb|ADL32946.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio
           proteoclasticus B316]
          Length = 502

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/421 (20%), Positives = 159/421 (37%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y+IGQ  AK+ +++A+ N ++R         E+   NILL+GPTG GKT 
Sbjct: 141 PHKIKAKLDEYVIGQDQAKKVMSVAVYNHYKRVATDTMDEIEIEKSNILLLGPTGSGKTY 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++    +      
Sbjct: 201 LVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKTEHGII------ 254

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT                  D+        +          V 
Sbjct: 255 -----FIDEIDKIAKKKNTTSR---------------DVSGESVQQGMLKLLEGSNVEVP 294

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   + I       +P+L    + RL    ++  D+           
Sbjct: 295 VGAGSKNAMVPLATVNTRNILFICGGAFPDLEDIITQRLNKQTSIGFDA----------- 343

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                                       D    ++       +
Sbjct: 344 -DLKDK-------------------------------------YEDDPNILSKVTVDDLK 365

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L++L K     IL + ++ ++ QY++L+  + + L F + +++
Sbjct: 366 KFGMIPEFLGRLPIICSLQALTKDMLVKILKEPKNAILKQYQKLLALDEVDLLFDDTALE 425

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A+ A+       D GAR L+ ++E  + DI +    D     V I  +Y+        
Sbjct: 426 AIAEKALE-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGRVTITRDYIEGKASPLI 480

Query: 428 S 428
            
Sbjct: 481 E 481


>gi|94968587|ref|YP_590635.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550637|gb|ABF40561.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Koribacter versatilis Ellin345]
          Length = 423

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 168/418 (40%), Gaps = 77/418 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65
            P E+ + LD Y+IGQ   K+ +++A+ N ++R           EL   NILLVGPTG G
Sbjct: 68  KPLEVKTFLDEYVIGQDQTKKKLSVAVYNHYKRVFMNRQRSGEVELQKSNILLVGPTGTG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A   V  ++   +   
Sbjct: 128 KTLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAADGDVARAQTGIIY-- 185

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E           ++N    GG 
Sbjct: 186 -----IDEIDKIGRKDENPSITRDVSGEGVQQALLKILE---------GTVANVPPQGG- 230

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+  P               V   +I  +    
Sbjct: 231 ----------------------RKHPHQEFTP---------------VDTTNILFIVGGA 253

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L++   +  R     +G   E  +++             + S N      +      
Sbjct: 254 FVGLEKI--VGRRLGKRALGFRDEEKEKN-------------FTSANNRDSEMLQRSEPQ 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L+++    ILT  ++ ++ QY+ L + E + L F+++
Sbjct: 299 DLIKFGLIPEFVGRLPVMGVLNDLDENALVEILTKPKNAIVKQYQRLFEFENVKLKFSDE 358

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           ++ A+A  A+        +GAR L+ ++E ++ D+ +S    +  K   + AE V+  
Sbjct: 359 AVRAIAREAMQRK-----VGARGLRMILEELMLDLMYSLPSQKRVKEFEVTAEMVQKR 411


>gi|171743307|ref|ZP_02919114.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC
           27678]
 gi|171278921|gb|EDT46582.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC
           27678]
          Length = 438

 Score =  262 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 175/431 (40%), Gaps = 97/431 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--------------- 52
            P +I + LD Y++GQ+ AKR +++A+ N ++R  +      EL                
Sbjct: 64  KPAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADV 123

Query: 53  ---PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
                NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 124 QVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 183

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V                                         EID ++
Sbjct: 184 ADGDVARAQQGIV--------------------------------------YIDEID-KI 204

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + ++             L ++    M S                   + + +  +
Sbjct: 205 ARKSGENTSITRDVSGEGVQQALLKILEGTMASVPM----------------EGTRKHRE 248

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +TV  D+  ++   G  F+   D IVA+  G              +P  E         
Sbjct: 249 QETVQIDTRDILFICGGAFVG-LDDIVAQRLGARESGFGAAWHDHEVPKRE--------- 298

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                    +A  +        LLPE  GR PV   L+ L + D   ILT  E+ L+ QY
Sbjct: 299 --------LLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILTQPENALVKQY 350

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+ LED  F    L +
Sbjct: 351 QKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMFQLPSLDD 405

Query: 410 -KTVVIDAEYV 419
              V++DA  V
Sbjct: 406 VSEVIVDAASV 416


>gi|332686389|ref|YP_004456163.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus
           plutonius ATCC 35311]
 gi|332370398|dbj|BAK21354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus
           plutonius ATCC 35311]
          Length = 416

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 166/420 (39%), Gaps = 84/420 (20%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILL 58
           +LT    P+EI+  L+ Y+I Q  AK+ +++A+ N ++R     +   E   L   NI L
Sbjct: 57  ELTDIPKPQEILDALNEYVISQDSAKKTLSVAVYNHYKRVNHIEEDSAENVELQKSNICL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V    
Sbjct: 117 IGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQAADFNV---- 172

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                      AE+ I+                            EID ++A  S ++S 
Sbjct: 173 ---------ERAEKGII-------------------------YIDEID-KIARKSENVSI 197

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G  V    L  L   V     +   +                     + +  D+ 
Sbjct: 198 TRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTT 240

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F D  D IV    G       +        +V     S     I  D + F
Sbjct: 241 NILFIVGGAF-DGIDTIVKNRLGEKTIGFGQN------SVVFNEEKSVMQHIIPEDLLKF 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR PV   L+ L   D   ILT  ++ L+ QY++L+  +  
Sbjct: 294 ------------GLIPEFIGRLPVMAALEKLTTEDLVRILTVPKNALVKQYQKLLSLDDT 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAE 417
            L+F  +++  +A+ A+  N+     GAR L++++E ++ D+ F     +  K VVI   
Sbjct: 342 ELEFEPEALRVIANKAIERNT-----GARGLRSIIEDIMMDVMFEIPSNETIKKVVITKA 396


>gi|171463606|ref|YP_001797719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|226706593|sp|B1XUS8|CLPX_POLNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171193144|gb|ACB44105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 453

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/464 (22%), Positives = 177/464 (38%), Gaps = 116/464 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--------------------- 46
           +P +I   LD+Y+IGQ  AK+ +A+A+ N ++R Q                         
Sbjct: 67  TPHQIRKNLDQYVIGQDHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEGSDKKES 126

Query: 47  --------LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
                      EL   NILL+GPTG GKT +++ LAR+   PF+  + T  TE GYVG +
Sbjct: 127 KLPAKAMVDDVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           VE II+ L+      V +++R  V         + I          S TR+V  + ++  
Sbjct: 187 VENIIQKLLQACDYNVEKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQA 239

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
            +   E                                + V   G +K            
Sbjct: 240 LLKLVE-----------------------------GTMASVPPQGGRKHP---------- 260

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLP 277
                     + D +  D+  ++   G  F D  +K I  R +  GIG          +P
Sbjct: 261 ----------NQDFLQVDTTNILFICGGAF-DGLEKVIQQRTAKTGIGF------NATVP 303

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             +   VS     +  + ++              L+PE+ GR PV   L  L++     I
Sbjct: 304 GKDDRGVSDLLIEVEPEDLIKF-----------GLIPELIGRLPVVATLAQLDEEALIQI 352

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ L+ QY+ L+  EG  L+   +++ A+A  A+   +     GAR L++++E  L
Sbjct: 353 LTEPKNALVKQYQALLTMEGSELEVRREALSAIAKKAIARKT-----GARGLRSILEGSL 407

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLHIGDF------PSETDMYH 434
            D+ +    L+  + V+ID   +                 D+  
Sbjct: 408 MDVMYDLPSLKNVQKVIIDESSIADGGKPLLVYKQKVDHADLSK 451


>gi|242373966|ref|ZP_04819540.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348320|gb|EES39922.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 420

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 180/421 (42%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P++   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 172 --DKAEKGII-------------------------YVDEID-KIARKSENTSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILFILGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              +DE   I  R     IG  S E  + D   L+E                        
Sbjct: 249 FDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI--------------------RP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              +   L+PE  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+FT+
Sbjct: 287 EDLQSYGLIPEFIGRVPIVANLETLDIAALKNILTQPKNALVKQYTKMLELDNVELEFTD 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+++ A+   +     GAR L++++E  L DI +     +    VVI  + +   I
Sbjct: 347 EALSAISEKAIERKT-----GARGLRSIIEEALIDIMYDVPSTENVSKVVITEQTINEEI 401

Query: 424 G 424
            
Sbjct: 402 E 402


>gi|12322572|gb|AAG51286.1|AC027035_9 CLP protease regulatory subunit CLPX, putative [Arabidopsis
           thaliana]
          Length = 650

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 170/432 (39%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                       D   
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLVLSLIHSAQPIDDDDNV 310

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LARL   PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 311 ELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTV 370

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V+ +++  V            +D +   T  + +  + R                 
Sbjct: 371 AEFNVQAAQQGIVY-----------IDEVDKITKKAESLNISR----------------- 402

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                            V    + +   K++       + +  +        D     ID
Sbjct: 403 ----------------DVSGEGVQQALLKLLEGTI---VNVPGKGARKHPRGDHIQ--ID 441

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              +       +   G  F+D    IV R   + IG             V   ++     
Sbjct: 442 TKDI-------LFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSGAI----- 489

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              T  +L     A        L+PE  GRFP+ V L +L +     +L + ++ L  QY
Sbjct: 490 ---TSSLLESVESA--DLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQY 544

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L     + L FTE +++ ++  A+  N+     GAR L+ ++E +L +  F   D ++
Sbjct: 545 KKLFSMNNVKLHFTEKALEIISKQAMVKNT-----GARGLRALLESILTEAMFEIPDDKK 599

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 600 GDERIDAVIVDE 611


>gi|326771853|ref|ZP_08231138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
 gi|326637986|gb|EGE38887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
          Length = 433

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 176/419 (42%), Gaps = 81/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPT
Sbjct: 63  KPQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +  +
Sbjct: 123 GTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEKGII 182

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +   E            +    P
Sbjct: 183 Y-------IDEIDKIGRKAENPSITRDVSGEGVQQALLKIIE----------GTTASVPP 225

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GG                                    ++  +       +   +I  + 
Sbjct: 226 GGG------------------------------RKHPHQEFLE-------IDTTNILFIA 248

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 ++E   IV +      G    G          G+ ++   GS +    +F +  
Sbjct: 249 AGAFAGIEE---IVRQRQRKESGAQMVGF---------GAQLTGSTGSQD----VFTSPV 292

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L+ 
Sbjct: 293 RPEDLHKFGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELEL 352

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           T+ +I+A+A +A+   +     GAR L +++E VL    F    L E   VV+DA+ VR
Sbjct: 353 TDAAIEAVASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406


>gi|306823252|ref|ZP_07456628.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801887|ref|ZP_07696002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553884|gb|EFM41795.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221443|gb|EFO77740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium dentium JCVIHMP022]
          Length = 440

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 175/431 (40%), Gaps = 97/431 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--------------- 52
            P +I + LD Y++GQ+ AKR +++A+ N ++R  +      EL                
Sbjct: 66  KPAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADV 125

Query: 53  ---PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
                NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 126 QVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 185

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V                                         EID ++
Sbjct: 186 ADGDVARAQQGIV--------------------------------------YIDEID-KI 206

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + ++             L ++    M S                   + + +  +
Sbjct: 207 ARKSGENTSITRDVSGEGVQQALLKILEGTMASVPM----------------EGTRKHRE 250

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +TV  D+  ++   G  F+   D IVA+  G              +P  E         
Sbjct: 251 QETVQIDTRDILFICGGAFVG-LDDIVAQRLGARESGFGAAWHDHEVPKRE--------- 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                    +A  +        LLPE  GR PV   L+ L + D   ILT  E+ L+ QY
Sbjct: 301 --------LLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILTQPENALVKQY 352

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+ LED  F    L +
Sbjct: 353 QKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMFQLPSLDD 407

Query: 410 -KTVVIDAEYV 419
              V++DA  V
Sbjct: 408 VSEVIVDAASV 418


>gi|225574480|ref|ZP_03783090.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038307|gb|EEG48553.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM
           10507]
          Length = 477

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 171/416 (41%), Gaps = 87/416 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 124 PHKIKATLDDYVIGQEHAKKVISVAVYNHYKRVATDTMDEIEIEKSNMLMIGPTGCGKTY 183

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ  I
Sbjct: 184 LVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGII 237

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRD---GEISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D L  K   +N R+V  + ++      +   E+++ V   S +          
Sbjct: 238 FIDE--IDKL-AKKKNTNQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMV------- 287

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                         + +   + I       +PEL     +RL                  
Sbjct: 288 -------------PLTTVNTRNILFICGGAFPELENVIKERL------------------ 316

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                       + +  G G   +        ++E  +V                     
Sbjct: 317 -----------NKQASMGFGADLKDKYDRDNKILEKVTV--------------------E 345

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             R   ++PE  GR P+   L  L +     IL + ++ ++ QY++L+  + + L+F + 
Sbjct: 346 DLRSFGMIPEFIGRLPIIFTLSGLTQEMMVKILKEPKNAILKQYQKLLALDEVRLEFDDG 405

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++A+A  A+  ++     GAR L+ ++E  + DI +    D     V+I  EY+ 
Sbjct: 406 ALEAIAKKALEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGQVIITREYIE 456


>gi|218961380|ref|YP_001741155.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
 gi|167730037|emb|CAO80949.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Cloacamonas acidaminovorans]
          Length = 415

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/414 (23%), Positives = 170/414 (41%), Gaps = 84/414 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67
           P  I + LD+Y+IGQ  AK  +++A+ N ++R      +   +L   NIL++GPTG GKT
Sbjct: 59  PSRIKAYLDQYVIGQDSAKEIISVAVYNHYKRIFKQKYEDDVDLEKSNILMIGPTGSGKT 118

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  + R  V     
Sbjct: 119 LIAQTLARFLQVPFAISDATTLTEAGYVGEDVENILVRLLQNANYDVARAERGIVY---- 174

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  +D +   +  S T  + R                                  V
Sbjct: 175 -------IDEIDKISRKSETPSITR---------------------------------DV 194

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               + +   K++      K+ +  +       +D     I+MDT    +I  +      
Sbjct: 195 SGEGVQQALLKILEGT---KVNVPPKGGRKHPQQD----FIEMDT---KNILFIAGGAFF 244

Query: 248 FLDEFDKIVARDSGNGIGVSRE-GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            L++   I  R     IG   E G ++D   + + ++                       
Sbjct: 245 GLEKI--IKERMDKKSIGFDVELGKKQDESTIFDFTT--------------------PQD 282

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     IL   ++ +  QY++  + +G+ L+F+E++
Sbjct: 283 LLKYGLIPELIGRMPVICTLHELSEDALIDILVKPKNAICKQYQKFFEMDGVRLEFSEEA 342

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +  +A  A+   +     GAR L+++ME+ +  I FS  D  + ++ +I  E V
Sbjct: 343 LKEIARTAIKQKT-----GARGLRSIMEKFMLKIMFSIPDRSDIESCIITPEVV 391


>gi|326432268|gb|EGD77838.1| ATP-dependent protease ATP-binding subunit [Salpingoeca sp. ATCC
           50818]
          Length = 603

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/421 (23%), Positives = 167/421 (39%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVG 60
            P+EI+  L+ Y+IGQ  AK+ +A+A+ N ++R           A    +    NILL G
Sbjct: 226 KPKEILDNLNDYVIGQDHAKKTLAVAVYNHYKRVSANLKEASSSAAHDVQFEKSNILLAG 285

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT ++R LA +   PF   + T  T+ GYVG +VE ++  L+      +  ++R 
Sbjct: 286 PTGSGKTLLARTLANILNVPFAISDCTTLTQAGYVGEDVESVLYRLLQACDFDLDRAQRG 345

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V                                         EID   + + S ++  D
Sbjct: 346 IV--------------------------------------FLDEIDKISSISGSGVATRD 367

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           + G        + +   K++            +K                +T+  D+  +
Sbjct: 368 VSG------EGVQQALLKLLEGTVVNVPEKGGRKSPRG------------ETIQIDTSNI 409

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +      F    D I  R+    IG +     +     V+G         +  D ++   
Sbjct: 410 LFIASGAFNGLEDLIKKREEKGSIGFN--AALKTPNKPVDG----QMLRKVQADDLVKF- 462

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GRFP  VHL++L +SD   +LT+ +++L+ QY+ L + E   L
Sbjct: 463 ----------GLIPEFVGRFPCVVHLEALTESDLVRVLTEPKNSLVSQYRALFRMENTDL 512

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            F+  S+ A A  A++  +     GAR L+T +E+VL    +        TV+I  + V 
Sbjct: 513 VFSSSSLRAFAKKALDRKT-----GARGLRTFIEQVLLQPMYDVPGSDIATVMITDKTVL 567

Query: 421 L 421
            
Sbjct: 568 E 568


>gi|313204334|ref|YP_004042991.1| ATP-dependent clp protease ATP-binding subunit clpx [Paludibacter
           propionicigenes WB4]
 gi|312443650|gb|ADQ80006.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paludibacter
           propionicigenes WB4]
          Length = 410

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 176/424 (41%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD+Y+IGQ +AK+ +++A+ N ++R        D E+   NI++VG TG GK
Sbjct: 62  KPTEIKEYLDQYVIGQNEAKKYLSVAVYNHYKRLMQAKTSDDVEIEKSNIIMVGYTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +A+    PF  V+ T  TE GYVG ++E I+  L+ VA   V+ + R  V    
Sbjct: 122 TLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVKAAERGIV---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A    + S      G  
Sbjct: 178 ----------------------------------FIDEID-KIARKGDNPSITRDVSGEG 202

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    +   +   QK               M  V+  +I  V     
Sbjct: 203 VQQGLLKLLEGAVVNVPPQGGRKHPDQK---------------MIAVNTQNILFVCGGAF 247

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +++  KI +R +   +G                 + + ++  I+  ++L     A   
Sbjct: 248 DGIEK--KIASRLNTRVVGY----------------NAAKEHEQIDKHNML--QYIAPQD 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR P+  +L+ L++S  R ILT+ ++++I QY +L   + I L+F E  
Sbjct: 288 LKSFGLIPEIIGRLPILTYLEPLDRSALRRILTEPKNSIIKQYTKLFAMDDIELNFDESV 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++ + D A+        +GAR L+++ E ++ D  +      EK + I   Y +  I   
Sbjct: 348 LEYIVDKAIEFK-----LGARGLRSITETIMMDEMYEMPSKNEKKLTILLPYAQSKIEKT 402

Query: 427 PSET 430
               
Sbjct: 403 NVNR 406


>gi|125717923|ref|YP_001035056.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           sanguinis SK36]
 gi|323351645|ref|ZP_08087299.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|166215215|sp|A3CMV1|CLPX_STRSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125497840|gb|ABN44506.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Streptococcus sanguinis SK36]
 gi|322122131|gb|EFX93857.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis VMC66]
 gi|324991227|gb|EGC23161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK353]
 gi|324992983|gb|EGC24903.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK405]
 gi|324995708|gb|EGC27620.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK678]
 gi|325687395|gb|EGD29416.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK72]
 gi|325689773|gb|EGD31777.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK115]
 gi|325694581|gb|EGD36490.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK150]
 gi|325696427|gb|EGD38317.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK160]
 gi|327462279|gb|EGF08606.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1]
 gi|327470116|gb|EGF15580.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK330]
 gi|327489632|gb|EGF21424.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1058]
 gi|328946144|gb|EGG40289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1087]
 gi|332361329|gb|EGJ39133.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1056]
          Length = 409

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 167/422 (39%), Gaps = 84/422 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R        +   EL   NIL++
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 118 GPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +   + M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       DS     +  E VQ+                          
Sbjct: 268 FGQNNRA--IDE-------DSSYMQEIISEDVQK-------------------------- 292

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + 
Sbjct: 293 ----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVK 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEY 418
           L+F ED++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E 
Sbjct: 343 LEFDEDALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENVKLVRITKEA 397

Query: 419 VR 420
           V 
Sbjct: 398 VD 399


>gi|283455720|ref|YP_003360284.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium dentium Bd1]
 gi|283102354|gb|ADB09460.1| clpX ATP-dependent Clp protease ATP-binding subunit clpX
           [Bifidobacterium dentium Bd1]
          Length = 440

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 175/431 (40%), Gaps = 97/431 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--------------- 52
            P +I + LD Y++GQ+ AKR +++A+ N ++R  +      EL                
Sbjct: 66  KPAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADV 125

Query: 53  ---PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
                NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  
Sbjct: 126 QVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 185

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V                                         EID ++
Sbjct: 186 ADGDVARAQQGIV--------------------------------------YIDEID-KI 206

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + ++             L ++    M S                   + + +  +
Sbjct: 207 ARKSGENTSITRDVSGEGVQQALLKILEGTMASVPM----------------EGTRKHRE 250

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +TV  D+  ++   G  F+   D IVA+  G              +P  E         
Sbjct: 251 QETVQIDTRDILFICGGAFVG-LDDIVAQRLGARESGFGAAWHDHEVPKRE--------- 300

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                    +A  +        LLPE  GR PV   L+ L + D   ILT  E+ L+ QY
Sbjct: 301 --------LLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILTQPENALVKQY 352

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   +G+ L FTE+++  +A  ++   +     GAR L++++E+ LED  F    L +
Sbjct: 353 QKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMFQLPSLDD 407

Query: 410 -KTVVIDAEYV 419
              V++DA  V
Sbjct: 408 VSEVIVDAASV 418


>gi|241668324|ref|ZP_04755902.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876857|ref|ZP_05249567.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842878|gb|EET21292.1| ATP-dependent protease ATP-binding subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 417

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/424 (23%), Positives = 178/424 (41%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R       D   EL   N+LL+GPTG G
Sbjct: 58  KPIEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        + S TR+V  + ++   +   E  +                  
Sbjct: 176 -----IDEIDKIARKSESASITRDVSGEGVQQALLKLIEGTV------------------ 212

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                      S V   G +K                      + D +  D+  ++   G
Sbjct: 213 -----------SSVPPKGGRKHP--------------------NQDMIQVDTSDILFICG 241

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F    +K+V  R     IG + + +Q+                S++T+ ++       
Sbjct: 242 GAFAG-IEKVVKHRMDKVSIGFNADVIQQK--------------NSLDTEKLMQKVES-- 284

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++F++
Sbjct: 285 EDLTRFGLIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSD 344

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++  +A  A+   +     GAR L+T++E VL ++ F      + + V+I+ + +    
Sbjct: 345 EALVEIAKKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIINDKVILEQE 399

Query: 424 GDFP 427
               
Sbjct: 400 EPIL 403


>gi|124007707|ref|ZP_01692410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
 gi|123986829|gb|EAY26601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
          Length = 409

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/432 (22%), Positives = 171/432 (39%), Gaps = 88/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63
            PR++   +D++++GQ  AK+ + +A+ N ++R    QQ        +   NI++VG TG
Sbjct: 57  KPRQMKEFIDQFVVGQDQAKKVMTVAVYNHYKRLMQKQQSDNTDDVVIEKSNIIMVGQTG 116

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG ++E ++  L+  A   V  + R  V 
Sbjct: 117 TGKTYLAKTLAKILQVPFCIADATVLTEAGYVGEDIENVLTRLLQAADYNVEAAERGIV- 175

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                                                   EID ++A  S + S      
Sbjct: 176 -------------------------------------YIDEID-KIARKSDNPSITRDVS 197

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G  V    L  L    +    +   +                +LI   T++ ++I  +  
Sbjct: 198 GEGVQQGLLKMLEGSEVNVPPQGGRKHP------------EQKLI---TINTENILFICG 242

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                +D    I +R     IG + E  Q D+                       +   A
Sbjct: 243 GAFDGIDRM--IASRLKTRPIGFAGEDDQDDID------------------RDNLLQYVA 282

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
               +   L+PE+ GR PV  +L  L     R ILT+ ++ L+ QY++L   E I L F+
Sbjct: 283 SQDLKTFGLIPELIGRLPVVTYLPPLTHETIRKILTEPKNALVKQYQKLFAMENIDLTFS 342

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVRLH 422
           + +++ + D A+        +GAR L+++ E ++ D  F   SD +   ++ID  Y R  
Sbjct: 343 DGALNYIVDKAMESK-----LGARGLRSICEAIMTDAMFEVTSDSEHSELIIDETYAREK 397

Query: 423 IGDFPSETDMYH 434
                 ++ +  
Sbjct: 398 F----EKSKLSR 405


>gi|110638107|ref|YP_678316.1| ATP-dependent protease ATP-binding subunit ClpX [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280788|gb|ABG58974.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 411

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 175/426 (41%), Gaps = 85/426 (19%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVG 60
           FN   P ++ S LD+Y+IGQ +AK+ +++A+ N ++R        D   ++   NI++VG
Sbjct: 55  FNLIKPAKMKSHLDQYVIGQDEAKKVMSVAVYNHYKRLMQSKINEDDDVQIEKSNIIMVG 114

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT ++R LA++   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 115 ETGTGKTYLARTLAKILQVPFCIADATVLTEAGYVGEDVESILTRLLQAANYDVDAAQRG 174

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V                                         EID ++A  S + S   
Sbjct: 175 IV--------------------------------------YIDEID-KIARKSDNPSITR 195

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   ++    +   +   QK               M  ++ ++I  
Sbjct: 196 DVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQK---------------MIAINTENILF 240

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +       +     I  R +   IG   +  + D                I+ +++L   
Sbjct: 241 ICGGAFDGIARI--IANRLNTQPIGFKTKDDEDD----------------IDAENLLQYV 282

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +      +   L+PE+ GR P+  +L  LN+     ILT  ++ ++ QYK+L   EGI L
Sbjct: 283 TAL--DLKTFGLIPELIGRLPLVSYLDPLNEEMLLEILTQPKNAIVKQYKKLFDMEGISL 340

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVIDAEY 418
            F  +++  + + A+        +GAR L+++ E ++ D  F     + K  + VI+ EY
Sbjct: 341 TFEPEALQFIVEKAMAFK-----LGARGLRSICEAIMTDAMFDLPSEEIKQASFVINYEY 395

Query: 419 VRLHIG 424
            +  + 
Sbjct: 396 AKEKLD 401


>gi|319400990|gb|EFV89209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis FRI909]
          Length = 420

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 181/428 (42%), Gaps = 85/428 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 172 --DKAEKGII-------------------------YVDEID-KIARKSENTSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILFILGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              +DE   I  R     IG  S E  + D   L+E                        
Sbjct: 249 FDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI--------------------RP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              +   L+PE  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E
Sbjct: 287 EDLQSYGLIPEFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+++ A+   +     GAR L++++E  L DI +     +    VVI  + +   I
Sbjct: 347 EALSAISEKAIERKT-----GARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINDEI 401

Query: 424 GDFPSETD 431
                + +
Sbjct: 402 EPELYDEE 409


>gi|327460433|gb|EGF06770.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1057]
 gi|327474152|gb|EGF19562.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK408]
 gi|332360699|gb|EGJ38508.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK49]
 gi|332360755|gb|EGJ38563.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK355]
          Length = 409

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 166/422 (39%), Gaps = 84/422 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R        +   EL   NIL++
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 118 GPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +   + M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       D      +  E VQ+                          
Sbjct: 268 FGQNNRA--IDE-------DGSYMQEIISEDVQK-------------------------- 292

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + 
Sbjct: 293 ----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVK 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEY 418
           L+F ED++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E 
Sbjct: 343 LEFDEDALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENVKLVRITKEA 397

Query: 419 VR 420
           V 
Sbjct: 398 VD 399


>gi|70726252|ref|YP_253166.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           haemolyticus JCSC1435]
 gi|123660428|sp|Q4L715|CLPX_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|68446976|dbj|BAE04560.1| protease ClpX [Staphylococcus haemolyticus JCSC1435]
          Length = 420

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 182/427 (42%), Gaps = 85/427 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           + T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+
Sbjct: 57  EFTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +     
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----- 171

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE+ I+                            EID ++A  S + S  
Sbjct: 172 --------DKAEKGII-------------------------YVDEID-KIARKSENTSIT 197

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L         +   +   Q+            LI +DT    +I 
Sbjct: 198 RDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNIL 242

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +       +DE   I  R     IG  S E  + D   L+E                  
Sbjct: 243 FILGGAFDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI---------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + +
Sbjct: 285 ----RPEDLQSYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDNV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+FTE+++ A+++ A+   +     GAR L++++E  L DI +     ++ T VVI  +
Sbjct: 341 ELEFTEEALAAVSEKAIERKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVVITDK 395

Query: 418 YVRLHIG 424
            +   + 
Sbjct: 396 TINDEVD 402


>gi|262037358|ref|ZP_06010823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           goodfellowii F0264]
 gi|261748615|gb|EEY35989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           goodfellowii F0264]
          Length = 409

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 173/428 (40%), Gaps = 86/428 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD YIIGQ+ AK+ +++A+ N ++R +      D  EL   N+LLVGPTG 
Sbjct: 60  LKPAEIKAKLDDYIIGQETAKKVLSVAVYNHFKRIKHKMKNIDDVELQKSNVLLVGPTGS 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   P    + T  TE GYVG +VE ++  L+  A   +          
Sbjct: 120 GKTLLAQTLAKILNVPLAIADATTLTEAGYVGDDVENVLLKLIKAADYDI---------- 169

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE  I+                            EID ++A  S ++S      G
Sbjct: 170 ---ETAEHGII-------------------------YIDEID-KIARKSENMSITRDVSG 200

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +   V     +   +   Q+               M  ++   I  +   
Sbjct: 201 EGVQQALLKIIEGTVASVPPQGGRKHPNQE---------------MIEINTKDILFIVGG 245

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASG 302
               L+   K    +   G G+   G + D + L E        K+G I           
Sbjct: 246 AFEGLESKLKNRINEKRVGFGLENNGQKLDEMTLFENVLPEDLIKFGLI----------- 294

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                      PE+ GR P+   L  L++     ILT+ +++L+ QYK+  + E I L F
Sbjct: 295 -----------PELIGRLPIITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMEDIKLSF 343

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
            +D+I  +A +A+        IGAR L++++E V+ D+ +    ++  T V+I  E V  
Sbjct: 344 EDDAIVEIAKLALKRK-----IGARGLRSIIESVMLDLMYEIPSMENVTKVIITKEAVED 398

Query: 422 HIGDFPSE 429
                  +
Sbjct: 399 KSKVIIKK 406


>gi|225554601|gb|EEH02897.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces
           capsulatus G186AR]
          Length = 621

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 180/492 (36%), Gaps = 97/492 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM----------- 52
            +P+ +   LD++++GQ  AK+ +++A+ N ++R    Q   + ++EL            
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 53  ----------------------------------------PKNILLVGPTGVGKTAISRR 72
                                                     NILL+GP+GVGKT +++ 
Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQAS 127
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV + A+
Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEWGIICLDEVDKLAA 267

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                       GK  +    +    K+ +G     +   E   + S  S+   P     
Sbjct: 268 AKVSH-------GKDVSGEGVQQALLKIIEGTTVQIQAKPERNASRSGGSHNSSPSTTGS 320

Query: 188 GILNLSELFSKVMGSGRK-------KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                S   +     G+          I       +  L     +++I MD + R SI  
Sbjct: 321 NFGGSSFSSAPPGLPGKPEVYNVRTDNILFIFSGAFVGL-----NKMI-MDRISRGSIGF 374

Query: 241 VENYGIVFLDEFDK-----IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +                 +         G   E + +  LP    + + +  GS + + 
Sbjct: 375 GQPIRASSNSFSSHNSSHAVSTAPIPILPGSEEEALYKKHLPFFTPAPLPSGSGSPDEEP 434

Query: 296 ILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             F       +  P DL     +PE+ GR PV   L  L       ILT+  ++L+ QY 
Sbjct: 435 TYF---NPLDLLTPVDLQTYGFIPELVGRIPVITALSQLTHHLLLRILTEPRNSLLAQYT 491

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L    GI L FT  ++  +A  A+++ +     GAR L+T ME +L D  F A     K
Sbjct: 492 TLFSLSGIELRFTTPALHKIASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVK 546

Query: 411 TVVIDAEYVRLH 422
            V+I        
Sbjct: 547 FVLITEAVAARK 558


>gi|293366377|ref|ZP_06613056.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319502|gb|EFE59869.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 420

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 179/421 (42%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 172 --DKAEKGII-------------------------YVDEID-KIARKSENTSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILFILGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              +DE   I  R     IG  S E  + D   L+E                        
Sbjct: 249 FDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI--------------------RP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              +   L+PE  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E
Sbjct: 287 EDLQSYGLIPEFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+++ A+   +     GAR L++++E  L DI +     +    VVI  + +   I
Sbjct: 347 EALSAISEKAIERKT-----GARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEI 401

Query: 424 G 424
            
Sbjct: 402 E 402


>gi|27468267|ref|NP_764904.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867149|ref|YP_188812.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           epidermidis RP62A]
 gi|242242938|ref|ZP_04797383.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251811069|ref|ZP_04825542.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875905|ref|ZP_06284772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis SK135]
 gi|38257569|sp|Q8CNY5|CLPX_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71153013|sp|Q5HNM9|CLPX_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27315813|gb|AAO04948.1|AE016748_182 protease ClpX [Staphylococcus epidermidis ATCC 12228]
 gi|57637807|gb|AAW54595.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis RP62A]
 gi|242233539|gb|EES35851.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis W23144]
 gi|251805404|gb|EES58061.1| ATP-dependent protease ATP-binding subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294930|gb|EFA87457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis SK135]
 gi|329724687|gb|EGG61193.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU144]
 gi|329733781|gb|EGG70107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU045]
 gi|329737339|gb|EGG73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus epidermidis VCU028]
          Length = 420

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 179/421 (42%), Gaps = 85/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+GPTG G
Sbjct: 63  TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDI----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  S + S      G 
Sbjct: 172 --DKAEKGII-------------------------YVDEID-KIARKSENTSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L         +   +   Q+            LI +DT    +I  +    
Sbjct: 204 GVQQALLKILEGTTASVPPQGGRKHPNQE------------LIQIDT---TNILFILGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              +DE   I  R     IG  S E  + D   L+E                        
Sbjct: 249 FDGIDEV--IKRRLGEKVIGFASNEADKYDEEALLEQI--------------------RP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              +   L+PE  GR P+  +L++L+ +  + ILT  ++ L+ QY ++++ + + L+F+E
Sbjct: 287 EDLQSYGLIPEFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+++ A+   +     GAR L++++E  L DI +     +    VVI  + +   I
Sbjct: 347 EALSAISEKAIERKT-----GARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEI 401

Query: 424 G 424
            
Sbjct: 402 E 402


>gi|226287963|gb|EEH43476.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb18]
          Length = 622

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/493 (20%), Positives = 176/493 (35%), Gaps = 100/493 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDE---- 50
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q            +    R E    
Sbjct: 91  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVES 150

Query: 51  -------------------------------------LMPKNILLVGPTGVGKTAISRRL 73
                                                L   NILL+GP+GVGKT +++ L
Sbjct: 151 HPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTL 210

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T  T+ GY+G + +  +  L+  A   V ++ R     DEV      
Sbjct: 211 ARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV------ 264

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              ++I  A V      +   V +  L+  E +  +I  +    +               
Sbjct: 265 ---DKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSS 321

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES---DRLIDMDTVHRDSIQMVENYG 245
               S   S        K    +V+      +   +      + MD + R SI   +   
Sbjct: 322 SFGGSSFSSPAPPGSSGKAEVYNVRTDNILFIFSGAFVGLNKVIMDRISRGSIGFGQPVR 381

Query: 246 IVFLDEFDKIVARDSGNGIGVS-----------REGVQRDLLPLVEGSSVSTKYGSINTD 294
            +                 G S            E + +  LP    + + +  GS + +
Sbjct: 382 ALTS------SFSSHNPSHGASSPPIPILPGSAEEALYKKHLPFFTPAPMPSTSGSADEE 435

Query: 295 HILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              F       +  P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY
Sbjct: 436 PTYF---NPLDLLTPPDLQTYGFIPELVGRIPITTALSQLTHRLLLRILTEPRNSLLAQY 492

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L    GI L FT  ++  +A  A+++ +     GAR L+T ME +L D  F A     
Sbjct: 493 TTLFSLSGIELRFTTPALHKIASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSV 547

Query: 410 KTVVIDAEYVRLH 422
           K V++        
Sbjct: 548 KFVLVTEAVASRK 560


>gi|313619225|gb|EFR90986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria
           innocua FSL S4-378]
          Length = 362

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 170/427 (39%), Gaps = 83/427 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 6   KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 65

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 66  KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDV----------- 114

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +VA  S + S      G 
Sbjct: 115 --EKAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGE 146

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+            LI +DT    +I  +    
Sbjct: 147 GVQQALLKILEGTVASVPPQGGRKHPHQE------------LIQIDT---GNILFIVGGA 191

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D  ++IV    G    V   G     L   E          +  D + F       
Sbjct: 192 F---DGIEQIVKNRMGEK--VIGFGTDNAKLKEDETYLSRV----VPEDLLKF------- 235

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L+ L+++    ILT+ ++ L+ QYK +++ + + L+F   
Sbjct: 236 -----GLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPT 290

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L++++E+++ ++ F      +    +I  +  R    
Sbjct: 291 ALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEE 345

Query: 425 DFPSETD 431
                 D
Sbjct: 346 PQLQLED 352


>gi|187735545|ref|YP_001877657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425597|gb|ACD04876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 456

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 173/421 (41%), Gaps = 86/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
           +P E+ + L++Y+IGQ  AK+ +++A+ N + R +  A + D       E+   NILL G
Sbjct: 101 TPEEMCATLNQYVIGQDYAKKVLSVAVYNHYMRLRQSAVMLDDKSLDDVEIEKSNILLAG 160

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A   V ++   
Sbjct: 161 PTGSGKTLLAKTLAKMLNVPFCIVDATTLTEAGYVGEDVENIILRLLQAANFDVAKA--- 217

Query: 121 EVREQASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              EQ  I  +E  +D +  KT   S TR+V  + ++   +   E  I          N 
Sbjct: 218 ---EQGIIYVDE--IDKIGRKTQNVSVTRDVSGEGVQQALLKIIEGTI---------CNV 263

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
              GG                                    ++          V+ + I 
Sbjct: 264 PPTGG-------------------------------RKHPQQEYI-------RVNTEKIL 285

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +     V L++   I  R     +G      QRD     E                  +
Sbjct: 286 FIVGGAFVGLEDI--IRKRLGATQMGFGAITEQRDRKEYSEEEI---------------L 328

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           A           ++PE  GR P+   L  L++S    +LT+ ++ L+ QY +L+   G  
Sbjct: 329 AQAMPEDLFSFGMIPEFVGRLPIFCPLSKLDESQLVRLLTEPKNALVKQYSKLLAMYGAK 388

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           LD   D++ A+A  A+   +     GAR L+++ E ++ D+ +    ++   TV I  E 
Sbjct: 389 LDVLPDALKAMAAEAMKRGT-----GARALRSIFETLMLDVMYKVPSMKNADTVTITRET 443

Query: 419 V 419
           V
Sbjct: 444 V 444


>gi|301167837|emb|CBW27422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteriovorax
           marinus SJ]
          Length = 436

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/420 (23%), Positives = 164/420 (39%), Gaps = 89/420 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----DLRDELMPKNILLVGPT 62
            P EI   LD Y+IGQ  AK+ +++A+ N ++R    +         EL   NILL GPT
Sbjct: 65  KPHEIKLHLDNYVIGQDRAKKIISVAVHNHYKRISHGSVNKGRKDEVELAKSNILLAGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT I++ LA+    PF   + T  TE GYVG +VE II +L+      V  ++R  V
Sbjct: 125 GSGKTLIAQSLAKYLNVPFAIADATSLTEAGYVGEDVENIILNLLQSCDYDVERAQRGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +  K ++  VA            
Sbjct: 185 Y-------IDEIDKIARKSENPSITRDVSGEGVQQALL--KLVEGTVAAVPPK------- 228

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                      +   +       K I   V   +  L                       
Sbjct: 229 --------GGRKHPQQEFIQVDTKNILFIVAGAFVGL----------------------- 257

Query: 243 NYGIVFLDEFDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                     DKI+ +         V++E         VE S V    G    D   F  
Sbjct: 258 ----------DKIIEKRLTKRPMGLVTKE-------EKVEQSVVEKLGGIEAEDLSKF-- 298

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ L++     ILT+ ++ +  QY++L + +GI +
Sbjct: 299 ----------GLIPEFIGRLPVNALLQELDEEALVKILTEPKNAITKQYEKLFEYDGIEV 348

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
           +F E+++  +A  A+   +     GAR L+ ++E+ + D+ +      +   +V+  E +
Sbjct: 349 EFEEEALKEVAATALRKKT-----GARGLRAILEQTMLDVMYEVPSNDKICKIVVTKESI 403


>gi|225021670|ref|ZP_03710862.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681341|ref|ZP_07404148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
 gi|224945661|gb|EEG26870.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659546|gb|EFM49046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium matruchotii ATCC 14266]
          Length = 427

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 173/420 (41%), Gaps = 89/420 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------DLRDELMPKNILL 58
           P EI + LD+Y++GQ +AKR +A+A+ N ++R +             D   EL   NIL+
Sbjct: 67  PSEIAAFLDKYVVGQDEAKRILAVAVYNHYKRVRAEDARTLGGRKYRDDDTELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQ 186

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + +          S TR+V  + ++   +   E           +++
Sbjct: 187 RGIIYV-------DEVDKISRKSDNPSITRDVSGEGVQQALLKILE---------GTVAS 230

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG      +  +L            I   V   +  L +      +      + ++
Sbjct: 231 IPPQGGRKHPNQDFIQL--------DTSNILFIVAGAFAGLEK------VIEARRGKKAL 276

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                           I ++   N + + +     DL           K+G I       
Sbjct: 277 GFGAE-----------IPSKADQNDMEIFKYVSPEDL----------VKFGMI------- 308

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE  GR P+   + +L++     +LT+ +++L+ QY+ L   + +
Sbjct: 309 ---------------PEFIGRLPIVATVGNLDQKSLVKVLTEPKNSLVKQYQRLFDMDRV 353

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L F +D+++ +AD A++  +     GAR L+ +ME +L  I F   D +  + V+I A 
Sbjct: 354 ELLFEDDALEVIADKALDRGT-----GARGLRAIMEEILLPIMFEVPDRKNVEQVIITAA 408


>gi|212716952|ref|ZP_03325080.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660237|gb|EEB20812.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM
           16992]
          Length = 447

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 176/436 (40%), Gaps = 106/436 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--------------- 52
            P +I + LD Y++GQ+ AKR +++A+ N ++R  +      EL                
Sbjct: 74  KPAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESTELSDRATRENDDPLAGVQ 133

Query: 53  --PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
               NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 134 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193

Query: 111 INIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              V  ++      DE+ + A  + E           +TS TR+V  + ++   +   E 
Sbjct: 194 DGDVARAQQGIIYIDEIDKIARKSGE-----------STSITRDVSGEGVQQALLKILE- 241

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                                          + V   G +K                   
Sbjct: 242 ----------------------------GTVASVPVEGSRKHRE---------------- 257

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
               M+TV  D+  ++   G  F+   D +  R      G      +R++          
Sbjct: 258 ----METVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWHEREVPKRE------ 307

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                        +A  +        LLPE  GR PV   L+ L + D   IL + E+ L
Sbjct: 308 ------------LLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENAL 355

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY++L   +G+ L FTED++  +A  ++   +     GAR L++++E+ LED  F   
Sbjct: 356 VKQYQKLFAIDGVTLTFTEDAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMFQLP 410

Query: 406 DLQE-KTVVIDAEYVR 420
            +     VV+D   V 
Sbjct: 411 SMTGVSEVVVDEASVN 426


>gi|150020521|ref|YP_001305875.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho
           melanesiensis BI429]
 gi|149793042|gb|ABR30490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho
           melanesiensis BI429]
          Length = 408

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/417 (23%), Positives = 170/417 (40%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I +ELD+Y+IGQ+  K+ +++A+ N ++R     D  D E+   N++L+GPTG GK
Sbjct: 59  KPSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSNVDFDDVEIEKSNVILIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+R LA++   PF   + T  TE GYVG +VE +I  L++V    +  ++   +    
Sbjct: 119 TLIARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEVTNFDIERAQYGII---- 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 175 ----------------------------------YIDEID-KIAKKSPNPSITRDVSGEG 199

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+                  V   +I  +     
Sbjct: 200 VQQALLKIVEGTIANVPPQGGRKHPYQEFLK---------------VDTSNILFIVGGAF 244

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++E   I  R   + +G +     +  + L E                  ++      
Sbjct: 245 DGIEEI--IKRRIQSSAMGFNAPIKSKKEMKLGE-----------------ILSHITPED 285

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GRFPV   L+ L + D   ILT+ ++ ++ QYK+L   + I L+ T+D+
Sbjct: 286 LVQYGLIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLIDNIELEVTKDA 345

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A    +     GAR L++V E V+ D+ F   DL   + V++  + V   
Sbjct: 346 LYAIARKAAKRGT-----GARALKSVFEEVMIDVMFEIPDLDNVEKVIVTEKCVTKK 397


>gi|332366632|gb|EGJ44375.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis SK1059]
          Length = 409

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 166/422 (39%), Gaps = 84/422 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R        +   EL   NIL++
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 118 GPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +   + M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       D      +  E VQ+                          
Sbjct: 268 FGQNNRA--IDE-------DGSYMQEIISEDVQK-------------------------- 292

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GR PV   L+ L   D   IL +  + LI QY+ L+  + + 
Sbjct: 293 ----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVK 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEY 418
           L+F E+++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E 
Sbjct: 343 LEFDEEALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENVKLVRITKEA 397

Query: 419 VR 420
           V 
Sbjct: 398 VD 399


>gi|294790931|ref|ZP_06756089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia
           inopinata F0304]
 gi|294458828|gb|EFG27181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia
           inopinata F0304]
          Length = 426

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/434 (21%), Positives = 167/434 (38%), Gaps = 96/434 (22%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------------- 50
            +P  I S LDRY++GQ+ AK A+A+A+ N ++R  +  +   E                
Sbjct: 63  MTPARISSYLDRYVVGQKKAKHALAVAVYNHYKRINMELEDSAEKLKRSLSAEHSDLDQV 122

Query: 51  -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            +   N+LL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I++ L+  
Sbjct: 123 VVAKSNVLLLGPTGTGKTYLAQTLASIMDVPFTIADATTLTEAGYVGDDVETILQRLIQA 182

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   + +++R  +                                         EID ++
Sbjct: 183 ADGNINQAQRGII--------------------------------------YIDEID-KI 203

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + ++             L ++    + +   K  R                +  D
Sbjct: 204 ARKSGENTSITRDVSGEGVQQALLKIIEGTVSTVPVKGTR----------------KHED 247

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            + V  ++  ++   G  F+   D I  R      G   +   +                
Sbjct: 248 QEIVRINTKDILFICGGAFVGLEDIIRRRLGKRETGFGTDWSLQ---------------- 291

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             +T     +            LLPE  GR PV   L  L   D   ILT   + L  Q+
Sbjct: 292 --DTSDEDILTLVTPDDLAEYGLLPEFIGRMPVVSTLSPLTVDDLVSILTTPVNALTKQF 349

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +++   + + L FT++++ ++A  +++  +     GAR L+++ME +L++  F   D  +
Sbjct: 350 QKMFAVDQVDLSFTDEALRSIAKKSLSRGT-----GARGLRSIMENLLQETMFRIPDRTD 404

Query: 410 K-TVVIDAEYVRLH 422
              V++D   V   
Sbjct: 405 VCRVIVDENTVEGK 418


>gi|319939271|ref|ZP_08013634.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
 gi|319811667|gb|EFW07943.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           anginosus 1_2_62CV]
          Length = 410

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/423 (23%), Positives = 168/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  DE    L   NIL+
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNHEDEEDVELQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKII 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE              +  E +Q              K+G I       
Sbjct: 268 GFGQNNK--SIDE-------TGSYMQEIISEDIQ--------------KFGLI------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL + ++ L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F +D++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 KLEFDDDALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|320106218|ref|YP_004181808.1| Sigma 54 interacting domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924739|gb|ADV81814.1| Sigma 54 interacting domain protein [Terriglobus saanensis SP1PR4]
          Length = 429

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 174/418 (41%), Gaps = 73/418 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+        EL   NILLVGPTG G
Sbjct: 69  KPHEVKAFLDEYVIGQEMTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LA++   PF  V+ T  TE GYVG +VE II  L+  A         D  R Q
Sbjct: 129 KTLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA-------EGDVARAQ 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             I   + I          S TR+V  + ++   +   E           ++N    GG 
Sbjct: 182 TGIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILE---------GTVANVPPQGG- 231

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                             +      +V                        +I  +    
Sbjct: 232 -----------------RKHPHQEFTVVD--------------------TTNILFICGGA 254

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L++   I  R     +G   +G       ++EG++          D  L   +    
Sbjct: 255 FVGLEKV--IARRIGKKALGFKTQGDPD----VIEGATP----IRAQRDSELLRQAEPQD 304

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L+++    ILT   + ++ QY +L + EG+ + F+ +
Sbjct: 305 LLK-YGLIPEFVGRLPVLGILDELDEAALIDILTRPRNAILKQYAKLFEFEGVKVTFSSE 363

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +  A+A  A+N       +GAR L+ ++E ++ D+ ++   + + K + I AE V+  
Sbjct: 364 AAQAIAHEALNRK-----VGARGLRMILEELMLDLMYTVPTNKKLKELEITAEMVKSR 416


>gi|121703305|ref|XP_001269917.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1]
 gi|119398060|gb|EAW08491.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 180/480 (37%), Gaps = 89/480 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                 
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRRDEENAELLARRARREAIEHH 145

Query: 51  ----------------------------------LMPKNILLVGPTGVGKTAISRRLARL 76
                                             L   NILL+GP+GVGKT +++ LAR+
Sbjct: 146 PAEGQQRTAHPPPHPKPIASIPDDSALGASSALHLEKSNILLLGPSGVGKTLMAKTLARV 205

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAE 131
              PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+    
Sbjct: 206 LSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKVS 265

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                 + G+       ++        +   ++     +   +   + +  G AS    N
Sbjct: 266 HG--KDVGGEGVQQALLKIIEGTTVQVQAKQEKGAPRTSGAPNSYPSNNPLGNASFSQSN 323

Query: 192 LSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL- 249
              +  K    + R   I       +  L +      + MD + R S+   +        
Sbjct: 324 TGNISQKGEVYNVRTDNILFICSGAFVGLHK------VIMDRISRGSMGFGQPVRSQSNS 377

Query: 250 ------DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                 D              G   E + +  LP    SS ++     +++   F    A
Sbjct: 378 TSHRPGDPSHHTSNEPVPILSGSEEEALYKKYLPFFTASSPTSP----DSEPTYF---NA 430

Query: 304 FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
             +  P DL     +PE+ GR PV   L +L++S    ILT+  ++L+ QY  L    GI
Sbjct: 431 LDLLNPTDLQSYGFIPELVGRIPVTAALSTLSQSLLVRILTEPRNSLLAQYITLFSLSGI 490

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT  ++  +A  A  + +     GAR L+T ME +L D  F       K V++    
Sbjct: 491 ELRFTSSALHRVAANAFTMGT-----GARALRTEMETILSDAMFETPGSSVKFVLVTEAV 545


>gi|300859019|ref|YP_003784002.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686473|gb|ADK29395.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331272|gb|ADL21466.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis 1002]
          Length = 428

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 179/423 (42%), Gaps = 89/423 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------DLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R +             D   EL   NIL+
Sbjct: 67  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + +          S TR+V  + ++   +   E           +++
Sbjct: 187 RGIIYV-------DEVDKISRKSDNPSITRDVSGEGVQQALLKILE---------GTVAS 230

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG      +  +L            I   V   +  L +   +R        R   
Sbjct: 231 IPPQGGRKHPNQDFIQL--------DTSNILFIVAGAFAGLEKVIEER--------RGKK 274

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +     +   ++ D+I          V +E +  DL+                      
Sbjct: 275 GIGFGAELTSKEDIDQI---------DVFKEVLPEDLVKF-------------------- 305

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + +
Sbjct: 306 ------------GLIPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDV 353

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
           +L+F +D+++ +AD+A+   +     GAR L+ +ME +L  + +   D ++   V + A 
Sbjct: 354 VLEFDDDALEIIADLAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAA 408

Query: 418 YVR 420
            VR
Sbjct: 409 SVR 411


>gi|90579277|ref|ZP_01235087.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
 gi|90440110|gb|EAS65291.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14]
          Length = 426

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK+V +    G G+              G+ V +K    +T   LF       
Sbjct: 257 -------DKVVEQRVATGTGIGF------------GAEVRSKD-QTDTLSDLFEKVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D
Sbjct: 297 LVK-YGLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 356 ALVAIARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|225374726|ref|ZP_03751947.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM
           16841]
 gi|225213430|gb|EEG95784.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM
           16841]
          Length = 544

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/421 (21%), Positives = 160/421 (38%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 191 PHKIKASLDEYVVGQEHAKKVMSVAVYNHYKRIASDVQDGVEIEKSNMLMIGPTGCGKTY 250

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 251 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 304

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 305 -----FIDEIDKIAKKRNTNQR---------------DVSGESVQQGMLKLLEGAEVEVP 344

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M     K I       +P+L     +RL    ++   +           
Sbjct: 345 VGASSKNAMVPMTMVNTKNILFICGGAFPDLEDIIKERLNKEASIGFKA----------- 393

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   +LL  V    V                       R
Sbjct: 394 -DLKDK--------------YDNDENLLAKVTTEDV-----------------------R 415

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR PV   L++L +     IL + ++ +I QY++L+  + + L F ED++ 
Sbjct: 416 KFGMIPEFLGRLPVMFTLEALTEDMLVRILKEPKNAIIRQYEKLLAMDEVKLVFDEDALH 475

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           ++A  A         +GAR L++++E  + DI +    D     V I  +YV    G   
Sbjct: 476 SIAKEAKEKK-----VGARALRSIIEDFMLDIMYEIPKDDNIGMVTITKDYVEKKGGPLI 530

Query: 428 S 428
           +
Sbjct: 531 T 531


>gi|325094879|gb|EGC48189.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces
           capsulatus H88]
          Length = 621

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 180/492 (36%), Gaps = 97/492 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM----------- 52
            +P+ +   LD++++GQ  AK+ +++A+ N ++R    Q   + ++EL            
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 53  ----------------------------------------PKNILLVGPTGVGKTAISRR 72
                                                     NILL+GP+GVGKT +++ 
Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQAS 127
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV + A+
Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEWGIICLDEVDKLAA 267

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                       GK  +    +    K+ +G     +   E   + S  S+   P     
Sbjct: 268 AKVSH-------GKDVSGEGVQQALLKIIEGTTVQIQAKPERNASRSGGSHNSSPSTTGS 320

Query: 188 GILNLSELFSKVMGSGRK-------KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                S   +     G+          I       +  L     +++I MD + R SI  
Sbjct: 321 NFGGSSFSSAPPGLPGKPEVYNVRTDNILFIFSGAFVGL-----NKMI-MDRISRGSIGF 374

Query: 241 VENYGIVFLDEFDK-----IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +                 +         G   E + +  LP    + + +  GS + + 
Sbjct: 375 GQPIRSSSNSFSSHNSSHAVSTAPIPILPGSEEEALYKKHLPFFTPAPLPSGSGSPDEEL 434

Query: 296 ILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             F       +  P DL     +PE+ GR PV   L  L       ILT+  ++L+ QY 
Sbjct: 435 TYF---NPLDLLTPVDLQTYGFIPELVGRIPVITALSQLTHHLLLRILTEPRNSLLAQYT 491

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L    GI L FT  ++  +A  A+++ +     GAR L+T ME +L D  F A     K
Sbjct: 492 TLFSLSGIELRFTTPALHKIASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVK 546

Query: 411 TVVIDAEYVRLH 422
            V+I        
Sbjct: 547 FVLITEAVAARK 558


>gi|229828301|ref|ZP_04454370.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM
           14600]
 gi|229792895|gb|EEP29009.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM
           14600]
          Length = 590

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 179/433 (41%), Gaps = 94/433 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----------LMPKNIL 57
           P +I  +LD+Y++GQ  AK+ +++A+ N ++R     + + E           +   NIL
Sbjct: 226 PHKIKEQLDQYVVGQDKAKKMISVAVYNHYKRIASEQENQRELGTPEDLDGVDIEKSNIL 285

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT + R LARL   P    + T  TE GY+G ++E ++  L+  A N V  +
Sbjct: 286 IIGPTGSGKTYMVRTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVDRA 345

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-IDIEVADTSSDI 176
                 EQ  I  +E  +D L  K   +++R+V  + ++ G +   E  ++EV   +S  
Sbjct: 346 ------EQGIIFVDE--IDKL-AKKKNTHSRDVSGESVQQGMLKLLEGAEVEVPVGASSK 396

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           +                      M +   + I   V   +P L     +RL         
Sbjct: 397 NAMVP------------------MTTVNTRNILFIVGGAFPGLEDIIKERL--------- 429

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
                               ++ S  G      G     + ++E      K  S +    
Sbjct: 430 --------------------SKRSSMGFTSELRGDVGKDIHILE------KVRSED---- 459

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                      R   ++PE  GR P+    + L++  F  ILT+ ++ +I QY++L+  +
Sbjct: 460 ----------LRNFGMIPEFLGRLPIVTAFEQLDEDMFVRILTEPKNAIIKQYQKLLALD 509

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVID 415
            + L F++ +  A+A  A        ++GAR L++++E  + DI +    D     V I 
Sbjct: 510 EVRLTFSDGAFRAIARKAAE-----EELGARALRSIIEEYMMDIMYEIPKDPDIGEVEIT 564

Query: 416 AEYVRLHIGDFPS 428
            +Y+    G   +
Sbjct: 565 EDYIEHRGGPRVT 577


>gi|240276945|gb|EER40455.1| ATP-dependent Clp protease ATP-binding subunit [Ajellomyces
           capsulatus H143]
          Length = 621

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 180/492 (36%), Gaps = 97/492 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM----------- 52
            +P+ +   LD++++GQ  AK+ +++A+ N ++R    Q   + ++EL            
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 53  ----------------------------------------PKNILLVGPTGVGKTAISRR 72
                                                     NILL+GP+GVGKT +++ 
Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQAS 127
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV + A+
Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEWGIICLDEVDKLAA 267

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                       GK  +    +    K+ +G     +   E   + S  S+   P     
Sbjct: 268 AKVSH-------GKDVSGEGVQQALLKIIEGTTVQIQAKPERNASRSGGSHNSSPSTTGS 320

Query: 188 GILNLSELFSKVMGSGRK-------KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                S   +     G+          I       +  L     +++I MD + R SI  
Sbjct: 321 NFGGSSFSSAPPGLPGKPEVYNVRTDNILFIFSGAFVGL-----NKMI-MDRISRGSIGF 374

Query: 241 VENYGIVFLDEFDK-----IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +                 +         G   E + +  LP    + + +  GS + + 
Sbjct: 375 GQPIRSSSNSFSSHNSSHAVSTAPIPILPGSEEEALYKKHLPFFTPAPLPSGSGSPDEEL 434

Query: 296 ILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             F       +  P DL     +PE+ GR PV   L  L       ILT+  ++L+ QY 
Sbjct: 435 TYF---NPLDLLTPVDLQTYGFIPELVGRIPVITALSQLTHHLLLRILTEPRNSLLAQYT 491

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L    GI L FT  ++  +A  A+++ +     GAR L+T ME +L D  F A     K
Sbjct: 492 TLFSLSGIELRFTTPALHKIASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVK 546

Query: 411 TVVIDAEYVRLH 422
            V+I        
Sbjct: 547 FVLITEAVAARK 558


>gi|315221693|ref|ZP_07863609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
 gi|315189180|gb|EFU22879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           anginosus F0211]
          Length = 410

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/423 (23%), Positives = 168/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  DE    L   NIL+
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKII 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE              +  E +Q              K+G I       
Sbjct: 268 GFGQNNKA--IDE-------TGSYMQEIISEDIQ--------------KFGLI------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL + ++ L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F +D++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 KLEFDDDALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|332970862|gb|EGK09840.1| ATP-dependent Clp protease ATP-binding subunit [Kingella kingae
           ATCC 23330]
          Length = 422

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 174/418 (41%), Gaps = 79/418 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P ++V++L+ ++IGQ+ AK+++A+A+ N ++R + P    + EL   N+L++GPTG GK
Sbjct: 66  TPAQLVAQLNEHVIGQEQAKKSLAVAVYNHYKRLRQPDTADKVELSKSNVLMIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LAR    PF   + T  TE GYVG +VE I+  L+      V ++++  +    
Sbjct: 126 TYMVQSLARHLNVPFAMADATTLTEAGYVGEDVESIVTKLLGNCDFDVEKAQKGIIY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        + S TR+V  + ++   +  K I+  VA+        +      
Sbjct: 183 ----IDEIDKISRKSDSPSITRDVSGEGVQQALL--KLIEGTVANVPPQGGRRNPNQQFI 236

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                                         V   +I  +     
Sbjct: 237 ---------------------------------------------AVDTSNILFICGGAF 251

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             LD+   I  R    GIG       +D     E S +S  +  +  + ++         
Sbjct: 252 AGLDKV--IRQRTEKGGIGFGANVHSKD-----EDSRISELFEQVEPEDLI--------- 295

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L  L++     ILT+ ++ L+ QY+ L   E   L   +D+
Sbjct: 296 --RFGLIPELIGRLPVLTSLAELDEVALVRILTEPKNALVKQYQALFAMENKALQIDDDA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           +  +A +A+   +     GAR L+++MER L +  +    L +  TVV++   +   +
Sbjct: 354 LRVVAQLAMKRKT-----GARGLRSIMERALLETMYLLPTLDDVATVVVNKNVIENQV 406


>gi|314968427|gb|EFT12525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Propionibacterium acnes HL037PA1]
          Length = 429

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 166/426 (38%), Gaps = 98/426 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           PRE+   LD ++I Q+ A R +++A+ N ++R Q  A         D   EL   NIL++
Sbjct: 65  PRELCEFLDAWVICQKYAMRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELRKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ +AR    PF   + T  TE GYVG +VE I+  L+  A   V+ + R
Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID +VA  + + S  
Sbjct: 185 GIV--------------------------------------YIDEID-KVARKAENPSIT 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   V     +   +                     D +  D+  
Sbjct: 206 RDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------QQDFIQIDTTN 248

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F    D I  R     +G +          ++EG                  
Sbjct: 249 VLFIVGGAFAGLEDIIAKRIGTRPLGFN---NDPGASEVIEGPE---------------- 289

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A  + RP D     L+PE  GR P+   +  L++     ILT+  + L  Q+++L +
Sbjct: 290 ---ALSLVRPEDLHQFGLIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFE 346

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L FTE +++A+AD AV   +     GAR L+ ++E  L D+ F      +   VV
Sbjct: 347 LDGVELTFTEGALEAIADKAVARGT-----GARGLRAIIEETLMDVMFDVPSRDDVSRVV 401

Query: 414 IDAEYV 419
           +  E +
Sbjct: 402 VTQEAI 407


>gi|302206718|gb|ADL11060.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis C231]
          Length = 428

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 179/423 (42%), Gaps = 89/423 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------DLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R +             D   EL   NIL+
Sbjct: 67  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + +          S TR+V  + ++   +   E           +++
Sbjct: 187 RGIIYV-------DEVDKISRKSDNPSITRDVSGEGVQQALLKILE---------GTVAS 230

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG      +  +L            I   V   +  L +   +R        R   
Sbjct: 231 IPPQGGRKHPNQDFIQL--------DTSNILFIVAGAFAGLEKVIEER--------RGKK 274

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +     +   ++ D+I          V +E +  DL+                      
Sbjct: 275 GIGFGAELTSKEDIDQI---------DVFKEVLPEDLVKF-------------------- 305

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + +
Sbjct: 306 ------------GLIPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDV 353

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
           +L+F +D+++ +AD+A+   +     GAR L+ +ME +L  + +   D ++   V + A 
Sbjct: 354 VLEFDDDALEIIADLAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAA 408

Query: 418 YVR 420
            VR
Sbjct: 409 SVR 411


>gi|89073231|ref|ZP_01159761.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
 gi|89050941|gb|EAR56405.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp.
           SKA34]
          Length = 426

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 170/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK+V +    G G+              G+ V +K    +T   LF       
Sbjct: 257 -------DKVVEQRVATGTGIGF------------GAEVRSKD-QTDTLSDLFEKVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D
Sbjct: 297 LVK-YGLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A++  +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 356 ALVAIARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|330722054|gb|EGG99974.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma
           proteobacterium IMCC2047]
          Length = 198

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 109/197 (55%), Positives = 143/197 (72%), Gaps = 1/197 (0%)

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
           E  GIVFLDE DK+    S +G  VSREGVQRDLLPL+EGS+V+TK G I TDHILFIAS
Sbjct: 2   EQNGIVFLDEIDKVAKGSSASGGEVSREGVQRDLLPLIEGSTVNTKLGMIKTDHILFIAS 61

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           GAFH+S+P+DL+PE+QGR P+RV L +L+  DF+ ILT+ +++L  QY+ LM TEG  L 
Sbjct: 62  GAFHLSKPSDLIPELQGRLPIRVELNALSPEDFQRILTEPDASLTEQYQALMSTEGFKLT 121

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           F++D I  +A+VA  +N    +IGARRL TVMER+LE +SF ASD    K  V+ A+YV 
Sbjct: 122 FSDDGIKRIAEVAWQVNERTENIGARRLHTVMERLLETVSFEASDAGDNKETVVSADYVN 181

Query: 421 LHIGDFPSETDMYHFIL 437
            H+G+   + D+  +IL
Sbjct: 182 DHLGELVQDEDLSRYIL 198


>gi|166030630|ref|ZP_02233459.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC
           27755]
 gi|166029632|gb|EDR48389.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC
           27755]
          Length = 476

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +++A+ N ++R    +    E+   N+L++GPTG GKT 
Sbjct: 123 PHKIKASLDEYVVGQEYAKKVMSVAVYNHYKRVATDSMDDIEIEKSNMLMIGPTGSGKTY 182

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LAR+   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ  I
Sbjct: 183 LVKTLARILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGII 236

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             +E  +D +  K   S                    D+        +          V 
Sbjct: 237 FIDE--IDKIAKKKNASQR------------------DVSGESVQQGMLKLLEGSEVEVP 276

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P           D+D++ ++ +          
Sbjct: 277 VGANSKNAMVPLTTVNTKNILFICGGAFP-----------DLDSIIKERL---------- 315

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                    + S  G G   +        ++E          + T+ +           R
Sbjct: 316 --------TKQSAIGFGADLKDKYDHDKKILE---------KVTTEDL-----------R 347

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR PV   L+ L +  +  IL + ++ ++ QY++L+  + + LDFTE ++ 
Sbjct: 348 NFGMIPEFLGRLPVVFTLQGLTEDMYVKILEEPKNAILKQYQKLLALDEVKLDFTEGALR 407

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+       D GAR L+ ++E  + DI +    D     V I  EY+    G   
Sbjct: 408 AIAKKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITQEYIENTGGPII 462

Query: 428 S 428
           +
Sbjct: 463 T 463


>gi|225387260|ref|ZP_03757024.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme
           DSM 15981]
 gi|225046637|gb|EEG56883.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme
           DSM 15981]
          Length = 477

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 181/440 (41%), Gaps = 93/440 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           + +    +P +I + LD Y++GQ+ AK+ V++A+ N ++R  L     +E          
Sbjct: 116 LSMKDIPAPHQIKARLDEYVVGQEKAKKVVSVAVYNHYKRAFLGGKPEEETVSGPDEEVT 175

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NIL++GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A
Sbjct: 176 IEKSNILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAA 235

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEV 169
            N V  +      E+  I  +E  +D +  K  T NTR+V  + ++   +   E   +EV
Sbjct: 236 DNDVARA------EKGIIFIDE--IDKIAKKKQT-NTRDVSGESVQQELLKLLEGSTVEV 286

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S+  +                      M +     I       +P+L     +RL  
Sbjct: 287 PVGSNQKNAMTP------------------MATVNTDNILFICGGAFPDLEEIIKERLT- 327

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
                + S+     +G V  D FDK                   +LL  V    + T   
Sbjct: 328 ----KKSSM----GFGAVLRDTFDK-----------------DPNLLSYVTNEDLRT--- 359

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                 ++PE  GR P+ V L+ L++     IL + ++ +  QY
Sbjct: 360 --------------------FGMIPEFLGRLPMTVTLQGLDRDMMVRILREPKNAITKQY 399

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQ 408
           ++L+  + + L F +D++D +A  A+   +     GAR L+ ++E  + DI +    D  
Sbjct: 400 EKLLAMDEVRLVFEDDALDWIAGEAIKRGT-----GARALRAILEEFMLDIMYEIPKDSN 454

Query: 409 EKTVVIDAEYVRLHIGDFPS 428
             +VV+   Y+    G    
Sbjct: 455 IGSVVVTRPYLEKSGGPLIR 474


>gi|160898087|ref|YP_001563669.1| ATP-dependent protease ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
 gi|238687212|sp|A9C1U9|CLPX_DELAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160363671|gb|ABX35284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Delftia
           acidovorans SPH-1]
          Length = 420

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 164/423 (38%), Gaps = 92/423 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ   KR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQDLPKRTLAVAVYNHYKRLRHKDKAGKDEIELAKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 126 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDVERAQRGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 218

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 219 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 249

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG       +    + E                       F
Sbjct: 250 GGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISE----------------------VF 287

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P DL     +PE+ GR PV   L  L +     ILT+ ++ L+ QY +L+  EG+ 
Sbjct: 288 QEIEPEDLIKFGIIPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+    ++ A+A  A+   +     GAR L++++E+ L    +   +    + VV+D   
Sbjct: 348 LEIRPAALKAIARKALARKT-----GARGLRSILEQSLIGTMYELPNADNVEKVVVDEST 402

Query: 419 VRL 421
           +  
Sbjct: 403 IED 405


>gi|54309797|ref|YP_130817.1| ATP-dependent protease ATP-binding subunit ClpX [Photobacterium
           profundum SS9]
 gi|61211506|sp|Q6LNW1|CLPX_PHOPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46914235|emb|CAG21015.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium profundum SS9]
          Length = 426

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 168/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK+V +    G G+   G   D+    E  ++S  +  +  + ++        
Sbjct: 257 -------DKVVEQRVATGTGI---GFSADVRSKSEERTISDLFKKVEPEDLV-------- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D
Sbjct: 299 ---KYGLIPEFIGRLPVTATLTELDQEALVKILREPKNALTKQYAALLELENVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +          VVID   + 
Sbjct: 356 ALVAIAHKAMARKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVIDESVIN 406


>gi|239613498|gb|EEQ90485.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ER-3]
          Length = 624

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 186/490 (37%), Gaps = 94/490 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDE---- 50
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q            +    R E    
Sbjct: 89  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 148

Query: 51  --------------------------------------LMPKNILLVGPTGVGKTAISRR 72
                                                 L   NILL+GP+GVGKT +++ 
Sbjct: 149 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 208

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS 127
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R     DEV     
Sbjct: 209 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV----- 263

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               ++I  A V      +   V +  L+  E +  +I  +   ++            S 
Sbjct: 264 ----DKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERSAPRSGGSLNSNPGSG 319

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES----DRLIDMDTVHRDSIQMVEN 243
                   F+        K    +V+      +   +    ++LI MD + R SI   + 
Sbjct: 320 SGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAFVGLNKLI-MDRISRGSIGFGQP 378

Query: 244 YGIVFLDEFDKIVARDSGNG------IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
                 + F    A  + +        G   E + +  LP    + + +  G+ + +   
Sbjct: 379 VRASS-NSFSSHNASHAASTPPIPILPGSEEEALYKKHLPFFTPAPLPSGSGA-DEEPTY 436

Query: 298 FIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           F       +  P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY  L
Sbjct: 437 F---NPLDLLTPPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTL 493

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
               GI L FT  ++  +A+ A+++ +     GAR L+T ME +L D  F A     K V
Sbjct: 494 FSLSGIELRFTTPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFV 548

Query: 413 VIDAEYVRLH 422
           ++        
Sbjct: 549 LVTEAVAARK 558


>gi|298207460|ref|YP_003715639.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850096|gb|EAP87964.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 410

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 171/428 (39%), Gaps = 83/428 (19%)

Query: 2   KLTFNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNIL 57
           +LT       P  I + LD Y+IGQ+  KR +++A+ N ++R  Q P+D   E+   NI+
Sbjct: 52  ELTTELKLRKPHAIKAFLDGYVIGQEHTKRVMSVAVYNHYKRLLQQPSDDDIEIQKSNII 111

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           +VG TG GKT I++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   + ++
Sbjct: 112 MVGQTGTGKTLIAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKA 171

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           ++  V            +D                             +I+     SD  
Sbjct: 172 QQGIV-----------FID-----------------------------EIDKIARKSDNP 191

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           +             L +L      +   K  R                + I++DT   ++
Sbjct: 192 SITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPD-----------QKFIEVDT---EN 237

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  +       +D   KI  R +   +G S                 S     I  D++L
Sbjct: 238 ILFIAGGAFDGID--RKITKRLNMQAVGFS----------------ASLSEDQIERDNLL 279

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                     +   L+PEI GR PV  ++  L+K   R ILT+ ++ +I QYK+L + + 
Sbjct: 280 KYI--IPKDLKDFGLIPEIIGRLPVLTYMNPLDKGTLRAILTEPKNAIIKQYKKLFEMDE 337

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           +    T+ ++D + + A+        +GAR L+++ E +  D  F   D  EK   +   
Sbjct: 338 VDFHITDGALDYIVEKAIE-----YQLGARGLRSLCEEIFTDAMFDLPDSDEKEFKVTKA 392

Query: 418 YVRLHIGD 425
           Y    +  
Sbjct: 393 YAEEKLNK 400


>gi|224120816|ref|XP_002318424.1| predicted protein [Populus trichocarpa]
 gi|222859097|gb|EEE96644.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 181/461 (39%), Gaps = 112/461 (24%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------------- 45
           KL  +F +P++I   LD+++IGQQ AK+ +++A+ N ++R  L +               
Sbjct: 5   KLGSSFPTPKDICKALDKFVIGQQRAKKVLSVAVYNHYKRIHLESVKKWSVLFLSMALVN 64

Query: 46  -------------------------DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
                                    +   EL   NILL+GPTG GKT +++ LAR    P
Sbjct: 65  PFFPFPVTVMVCLYFPCNEKAETMDEEEVELEKSNILLMGPTGSGKTLLAKTLARFVNVP 124

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG 140
           F+  + T  T+  YVG +VE ++  L+  A   V  ++                      
Sbjct: 125 FVIADATTLTQARYVGEDVESMLYKLLTAADYNVAAAQ---------------------- 162

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
                            G I   E+D       S   + D+ G        + +   K++
Sbjct: 163 ----------------QGIIYIDEVDKITKKAESVNISRDVSG------EGVQQALLKML 200

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
                  + +  ++                D +  ++  ++   G  F+D    I  R  
Sbjct: 201 EGTV---VNVPDKEARKHPRG---------DNIQINTKDILFICGGAFIDLEKTISERRQ 248

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            + IG             V  +++        T  +L  A  +  VS    L+PE  GRF
Sbjct: 249 DSSIGFGAPVRANMRTGGVTSAAM--------TSSLLETAESSDLVS--YGLIPEFVGRF 298

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+ V L +L +     +LT+ ++ L  QY++L +  G+ L  TE ++ ++A  A+  N+ 
Sbjct: 299 PILVSLSALTEDQLVQVLTEPKNALGKQYRKLFQMNGVKLHVTEHALRSIAIKAITKNT- 357

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
               GAR L++++E +L D  +   D++    +IDA  V  
Sbjct: 358 ----GARALRSILENILMDSMYEIPDVRRGADIIDAVVVDE 394


>gi|119182495|ref|XP_001242376.1| hypothetical protein CIMG_06272 [Coccidioides immitis RS]
          Length = 612

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 104/493 (21%), Positives = 181/493 (36%), Gaps = 102/493 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                        
Sbjct: 87  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146

Query: 43  ----------------LPADLRDELMP----------------KNILLVGPTGVGKTAIS 70
                            P +  D+L P                 NILL+GP+GVGKT ++
Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQ 125
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV   
Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEHGIICLDEV--- 263

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 ++I  A V      +   V +  L+  E +  ++  +    +            
Sbjct: 264 ------DKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAKPEKNAPRHGGSPTNFPG 317

Query: 186 SVGILNLSELFSKVMGSG------RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +    +     ++           R   I       +  L +      I MD + R S+ 
Sbjct: 318 TSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAFVGLQK------IVMDRISRGSMG 371

Query: 240 MVENYGIVFLDEFDKIVARDSGNGI-----GVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +       + F       S N       G   E + +  LP    S   +  G+   +
Sbjct: 372 FGQPVR-SSANPFSSHNWSQSHNAPIPIRPGSEEEALYKKHLPFFTPSQTPSVAGT-EEE 429

Query: 295 HILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              F       +  P DL     +PE+ GR P+   L  L+++    ILT+  ++L+ QY
Sbjct: 430 PQYF---NPLDLLTPPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRNSLVNQY 486

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             L    GI L FT  ++  +A  A  +++     GAR L+T ME +L D  F A     
Sbjct: 487 TTLFALSGIELRFTTAALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSV 541

Query: 410 KTVVIDAEYVRLH 422
           K V++        
Sbjct: 542 KFVLVTEAVAARK 554


>gi|291548471|emb|CBL21579.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus sp. SR1/5]
          Length = 475

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 160/413 (38%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ+ AK+ +++ + N ++R         E+   N+L++GPTG GKT 
Sbjct: 124 PHKIKATLDEYVIGQEYAKKVMSVGVYNHYKRVATDTMDDIEIEKSNMLMIGPTGCGKTY 183

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++    +      
Sbjct: 184 LVKMLARLLQVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEHGII------ 237

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 238 -----FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGLLKLLEGSEVEVP 277

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M +   + I       +P+L     +RL    ++              +
Sbjct: 278 VGATSKNAMVPMVTVNTRNILFICGGAFPDLENIIKERLNKQASI------------GFY 325

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   D   ++E  +V                       R
Sbjct: 326 ADLKDK-----------------YDDDPHVLEKVTV--------------------DDLR 348

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L  L +     IL + ++ ++ QYK+L+  + + L+F + ++ 
Sbjct: 349 AFGMIPEFIGRLPIIFTLNGLTEDMLVKILKEPKNAILKQYKKLLALDEVKLEFEDGALH 408

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+A  A+  ++     GAR L+ ++E  + DI +    D     VVI   Y++
Sbjct: 409 AIARKALERHT-----GARALRAILEEYMLDIMYEIPKDDNIGEVVITEGYIQ 456


>gi|320535321|ref|ZP_08035440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
 gi|320147821|gb|EFW39318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           phagedenis F0421]
          Length = 414

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 102/417 (24%), Positives = 177/417 (42%), Gaps = 81/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P E    LD+YIIGQ  AKR +++A+ N ++R       +D+  +   N+LLVGPTG G
Sbjct: 62  TPAEFKEYLDQYIIGQDKAKRVLSVAVYNHYKRIINKPKEKDDVVIEKSNVLLVGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +   
Sbjct: 122 KTLLAKTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNAGGDINAAERGII--- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID +++  S ++S      G 
Sbjct: 179 -----------------------------------FIDEID-KISRKSENVSITRDVSGE 202

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   Q                M  +   +I  +    
Sbjct: 203 GVQQALLKIIEGTVASVPPQGGRKHPNQD---------------MLKIDTSNILFICGGA 247

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   + AR S + IG   +      +  ++   +   Y +++ D ++        
Sbjct: 248 FVGLDKI--VEARISQHPIGFGAD------IKTIKDKRLDELYDNLSPDDLVKF------ 293

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PEI GR P+ V L  L K D R ILT+  + +I Q++   K + + L F   
Sbjct: 294 -----GLIPEIIGRLPITVALNELTKDDLRKILTEPRNAIIKQFEASFKQDDVKLIFENS 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
           +++A+A +A++ N+     GAR L++++E+++ D  F A  ++ K  + I  E +  
Sbjct: 349 ALNAIAQLAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGKKELRITEEMITE 400


>gi|325662257|ref|ZP_08150872.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086069|ref|ZP_08335152.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471509|gb|EGC74730.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406992|gb|EGG86497.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 484

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 92/421 (21%), Positives = 167/421 (39%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y++GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 134 PHKIKAKLDEYVVGQEHAKKAMAVAVYNHYKRVATDTMDDIEIEKSNMLMIGPTGSGKTY 193

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R  +      
Sbjct: 194 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAERGII------ 247

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       N+ +                D+        +          V 
Sbjct: 248 -----FIDEIDKIAKKRNSSQR---------------DVSGESVQQGMLKLLEGSEVEVP 287

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL    ++   +           
Sbjct: 288 VGANSKNAMVPLTTVNTKNILFICGGAFPDLEEIIKERLNKQASIGFTA----------- 336

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK    D      V+ E +                                    R
Sbjct: 337 -DLKDK-WNHDKNILEKVTAEDL------------------------------------R 358

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ LN+     IL + ++ ++ QY++L+  + + L+F E +++
Sbjct: 359 NFGMIPEFIGRLPIIFTLQGLNEEMLVKILKEPKNAILKQYQKLLALDEVKLEFDEAALE 418

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+  N+     GAR L+ ++E  + DI +    D     V I  EY+    G   
Sbjct: 419 AIAKRAMEKNT-----GARALRAIIEEFMLDIMYEIPKDDNIGQVTITKEYIEGTGGPVI 473

Query: 428 S 428
           +
Sbjct: 474 T 474


>gi|319794077|ref|YP_004155717.1| ATP-dependent clp protease, ATP-binding subunit clpx [Variovorax
           paradoxus EPS]
 gi|315596540|gb|ADU37606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus EPS]
          Length = 421

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 174/424 (41%), Gaps = 92/424 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +++A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG               G++V +K     T+         F
Sbjct: 251 GGAFAGLEKVIENRTEASGIGF--------------GATVKSKAQRSITE--------VF 288

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L++ EG+ 
Sbjct: 289 REVEPEDLIKFGLIPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVD 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+    ++ A+A  A+   +     GAR L++++E+ L D  F   +      VV++   
Sbjct: 349 LEIRPAALKAIARKALARKT-----GARGLRSILEQSLIDTMFELPNATNVDKVVVEEST 403

Query: 419 VRLH 422
           +  +
Sbjct: 404 IDEN 407


>gi|330446592|ref|ZP_08310244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490783|dbj|GAA04741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 426

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 169/416 (40%), Gaps = 79/416 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKRLRNGDTNSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK+V +    G G+              G+ V +K    ++   LF       
Sbjct: 257 -------DKVVEQRVATGTGIGF------------GAEVRSKD-QADSLSNLFEKVEPED 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           + +   L+PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D
Sbjct: 297 LVK-YGLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++ A+A  A+   +     GAR L++++E VL D  +     Q    VVID   ++
Sbjct: 356 ALVAIARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406


>gi|327357376|gb|EGE86233.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ATCC 18188]
          Length = 629

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 186/490 (37%), Gaps = 94/490 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDE---- 50
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q            +    R E    
Sbjct: 94  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 153

Query: 51  --------------------------------------LMPKNILLVGPTGVGKTAISRR 72
                                                 L   NILL+GP+GVGKT +++ 
Sbjct: 154 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 213

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS 127
           LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R     DEV     
Sbjct: 214 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV----- 268

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               ++I  A V      +   V +  L+  E +  +I  +   ++            S 
Sbjct: 269 ----DKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERSAPRSGGSLNSNPGSG 324

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES----DRLIDMDTVHRDSIQMVEN 243
                   F+        K    +V+      +   +    ++LI MD + R SI   + 
Sbjct: 325 SGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAFVGLNKLI-MDRISRGSIGFGQP 383

Query: 244 YGIVFLDEFDKIVARDSGNG------IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
                 + F    A  + +        G   E + +  LP    + + +  G+ + +   
Sbjct: 384 VRASS-NSFSSHNASHAASTPPIPILPGSEEEALYKKHLPFFTPAPLPSGSGA-DEEPTY 441

Query: 298 FIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           F       +  P DL     +PE+ GR P+   L  L       ILT+  ++L+ QY  L
Sbjct: 442 F---NPLDLLTPPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTL 498

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
               GI L FT  ++  +A+ A+++ +     GAR L+T ME +L D  F A     K V
Sbjct: 499 FSLSGIELRFTTPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFV 553

Query: 413 VIDAEYVRLH 422
           ++        
Sbjct: 554 LVTEAVAARK 563


>gi|255658852|ref|ZP_05404261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
 gi|260849255|gb|EEX69262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
          Length = 433

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/422 (22%), Positives = 172/422 (40%), Gaps = 87/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
            P  I   LD YII Q  AK+ +++A+ N ++R +     D   E+   N++++GP+G G
Sbjct: 80  KPHIIKQYLDEYIINQDRAKKILSVAVYNHYKRMKYGYTNDDGTEIEKSNVIMLGPSGCG 139

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A   +++         
Sbjct: 140 KTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAADKDIQK--------- 190

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE  I+                            E D     + ++ S    PG  
Sbjct: 191 ----AEHGII-------------------------YLDEFDKIARKSGANNSITADPGHE 221

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V+    + + +    +                  V   +I  +    
Sbjct: 222 GVQQALLKMLEGNVVEFTARGQRKHP--EAPTI-------------KVDTKNILFIVGGA 266

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V +D  D I  R            +Q+    +  G+ V++K      D +        H
Sbjct: 267 FVGID--DVIAKR------------LQKADSSIGFGAEVTSKSEKPTFDEL-------IH 305

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             RP DL     +PEI GR P+   L++L++     ILT+ ++  + QY++L+  + + L
Sbjct: 306 QVRPEDLMQYGIIPEIIGRLPIICTLETLDEDALLRILTEPKNAPVKQYEKLLAMDNVKL 365

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +F ED++ A+A  A+   +     GAR L+ ++E V+ D+ +      E + V+I    +
Sbjct: 366 EFAEDALRAVAKKAIERKT-----GARSLKGIIEDVMLDVMYDIPKSDEPRKVIITKACI 420

Query: 420 RL 421
             
Sbjct: 421 DE 422


>gi|239815494|ref|YP_002944404.1| ATP-dependent protease ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
 gi|259491272|sp|C5CJT5|CLPX_VARPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239802071|gb|ACS19138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax
           paradoxus S110]
          Length = 421

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/419 (23%), Positives = 171/419 (40%), Gaps = 82/419 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +++A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR+   PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQRGIVY- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 186 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + V   G +K                      + D +  D+  ++   
Sbjct: 220 ---------GTMASVPPQGGRKHP--------------------NQDFLQIDTTNILFIC 250

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F      I  R   +GIG       +    + E       +  +  + ++       
Sbjct: 251 GGAFAGLEKVIENRTEASGIGFGASVKSKAQRSITE------VFREVEPEDLIKF----- 299

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L  L++     ILT+ ++ ++ Q+ +L++ EG+ L+   
Sbjct: 300 ------GLIPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLH 422
            ++ A+A  A+   +     GAR L++++E+ L D  F   +      VV++   +  +
Sbjct: 354 AALKAIARKALARKT-----GARGLRSILEQSLIDTMFELPNATNVDKVVVEESTIDEN 407


>gi|90410783|ref|ZP_01218798.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
 gi|90328414|gb|EAS44712.1| ATP-dependent protease ATP-binding subunit [Photobacterium
           profundum 3TCK]
          Length = 426

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/423 (24%), Positives = 169/423 (39%), Gaps = 79/423 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI + LD Y+IGQ  AK+ +A+A+ N ++R +      D  EL   NILL+GPTG G
Sbjct: 67  TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ---------- 227

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +   +        KI       +  L                          
Sbjct: 228 -----GGRKHPQQEFLQVDTSKILFICGGAFAGL-------------------------- 256

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  DK+V +    G G+   G   D+    E  ++S  +  +  + ++        
Sbjct: 257 -------DKVVEQRVATGTGI---GFGADVRSKSEERTISDLFKKVEPEDLV-------- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   L  L++     IL + ++ L  QY  L++ E + L+F +D
Sbjct: 299 ---KYGLIPEFIGRLPVTATLTELDQDALVQILREPKNALTKQYAALLELENVELEFRDD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ A+A  A++  +     GAR L++++E VL D  +          VVID   +     
Sbjct: 356 ALVAIARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVIDESVINGESE 410

Query: 425 DFP 427
              
Sbjct: 411 PLM 413


>gi|126663139|ref|ZP_01734137.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria
           bacterium BAL38]
 gi|126624797|gb|EAZ95487.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria
           bacterium BAL38]
          Length = 410

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 172/420 (40%), Gaps = 80/420 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65
             P+EI + LD Y+IGQ   K+ +++A+ N ++R  Q+  +   E+   NIL+VG TG G
Sbjct: 60  LKPKEIRAFLDDYVIGQDQTKKVMSVAVYNHYKRLMQIQLEDEVEIEKSNILMVGQTGTG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V   
Sbjct: 120 KTLVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVAKAERGIV--- 176

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A  S + S      G 
Sbjct: 177 -----------------------------------FIDEID-KIARKSDNPSITRDVSGE 200

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V+    K   +                + +    V+  +I  +    
Sbjct: 201 GVQQALLKLLEGTVVNVPPKGGRKHP------------DQKFV---EVNTQNILFIAGGA 245

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              ++    I  R +   +G S              SS+ T +   +      I      
Sbjct: 246 FDGIERI--ISKRLNRQAVGYS--------------SSIGTDHIDKDNLLQYLI----PK 285

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +   L+PEI GR PV  H+  L+ +  R ILT+ ++ L+ QYK+L + + + L+  E+
Sbjct: 286 DVKDFGLIPEIIGRLPVLTHMDPLDAATLRAILTEPKNALVKQYKKLFEMDEVTLEIEEE 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +++ +   A+        +GAR L+++ E +L D  +     ++K + ++ EY    +  
Sbjct: 346 ALNYIVSKALEYK-----LGARGLRSLCEAILTDAMYELPSSEDKHLQVNKEYAENSLNK 400


>gi|145296354|ref|YP_001139175.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum R]
 gi|166214773|sp|A4QGA7|CLPX_CORGB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|140846274|dbj|BAF55273.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 426

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 172/422 (40%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P EI + LD Y+IGQ  AKR +++A+ N ++R +           +   EL+  NIL++
Sbjct: 65  KPSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 125 GPTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQR 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +          + 
Sbjct: 185 GIIY-------IDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHP 237

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +                 +         I   V   +  L +  +DR             
Sbjct: 238 N-----------------QDFIQLDTTNILFIVAGAFSGLEKVIADRN------------ 268

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                             +  G G+ VS +  + D++ + +           +      +
Sbjct: 269 ----------------GKKGLGFGVEVSSKKEEADIVDIFK-----------DVRPEDLV 301

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
             G         L+PE  GR PV   + +L++     +LT+  ++L+ QY+ L + +  +
Sbjct: 302 KFG---------LIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYQRLFEMDDAV 352

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L FT+D+++ +A+ A+   +     GAR L+ +ME +L  I +   D ++   V+I+   
Sbjct: 353 LTFTDDALEEIANQALERKT-----GARGLRAIMEEILVPIMYDLPDREDVGEVIINGAV 407

Query: 419 VR 420
            R
Sbjct: 408 AR 409


>gi|303319225|ref|XP_003069612.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109298|gb|EER27467.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320040972|gb|EFW22905.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira]
          Length = 611

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 179/499 (35%), Gaps = 115/499 (23%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q                        
Sbjct: 87  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146

Query: 43  ----------------LPADLRDELMP----------------KNILLVGPTGVGKTAIS 70
                            P +  D+L P                 NILL+GP+GVGKT ++
Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQ 125
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV   
Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEHGIICLDEV--- 263

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 ++I  A V      +   V +  L+  E +  ++  +    +            
Sbjct: 264 ------DKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAKPEKNAPRHGGSPTNFPG 317

Query: 186 SVGILNLSELFSKVMGSG------RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +    +     ++           R   I       +  L +      I MD + R S+ 
Sbjct: 318 TSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAFVGLQK------IVMDRISRGSMG 371

Query: 240 MVENYGIVFLDEFDKIVARDSGNG-----------IGVSREGVQRDLLPLVEGSSVSTKY 288
             +                 S +             G   E + +  LP    S   +  
Sbjct: 372 FGQPVRSS--------ANPFSSHNWSSHNAPIPIRPGSEEEALYKKHLPFFTPSQTPSVA 423

Query: 289 GSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           G+   +   F       +  P DL     +PE+ GR P+   L  L+++    ILT+  +
Sbjct: 424 GT-EEEPQYF---NPLDLLTPPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRN 479

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L+ QY  L    GI L FT  ++  +A  A  +++     GAR L+T ME +L D  F 
Sbjct: 480 SLVNQYTTLFALSGIELRFTTAALHKIAANAFAVST-----GARALRTEMETILGDAMFE 534

Query: 404 ASDLQEKTVVIDAEYVRLH 422
           A     K V++        
Sbjct: 535 APGSSVKFVLVTEAVAARK 553


>gi|291539195|emb|CBL12306.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis XB6B4]
          Length = 514

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 158/421 (37%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 163 PHKIKASLDEYVVGQEHAKKVMSVAVYNHYKRIASDEKDGIEIEKSNMLMIGPTGSGKTY 222

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 223 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 276

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 277 -----FIDEIDKIAKKRNTNQR---------------DVSGESVQQGMLKLLEGAEVEVP 316

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M     K I       +PEL        I  + +++ +           
Sbjct: 317 VGASSKNAMVPMTMVNTKNILFICGGAFPELED------IIKERLNKSA----------- 359

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                 I  +          E + + +                                R
Sbjct: 360 -----SIGFKSELKDKYDQDENILQKVT---------------------------IEDVR 387

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ 
Sbjct: 388 KFGMIPEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALM 447

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A         +GAR L+ ++E  + DI +    D     V I  EYV    G   
Sbjct: 448 AIAKQAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVEKKGGPLI 502

Query: 428 S 428
           +
Sbjct: 503 T 503


>gi|329766942|ref|ZP_08258470.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           haemolysans M341]
 gi|328837667|gb|EGF87292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           haemolysans M341]
          Length = 402

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/423 (21%), Positives = 172/423 (40%), Gaps = 82/423 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I+  L+ Y+I Q  AK++VA+A+ N ++R +   +   EL   NI L+G TG GK
Sbjct: 61  LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIKAAENHDIELQKSNIALIGSTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSANYDI------------ 168

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A    ++S      G  
Sbjct: 169 -ERAEKGII-------------------------YIDEID-KIAKKGENVSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   ++               M  ++  +I  +     
Sbjct: 202 VQQALLKILEGTVASVPPQGGRKHPGEE---------------MIKINTKNILFIIGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++E   I  R     IG S+    +D   ++           +  + ++         
Sbjct: 247 SGIEEI--IKRRLGEKVIGFSKSDELKDDKDIIS---------KVKHEDLVKF------- 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GR PV  +L+ L++ D   +LT+ +++++ QY+ L   +G+ L F E++
Sbjct: 289 ----GMIPEFIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFDLDGVKLIFEEEA 344

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           ++ +A  ++   +     GAR L++++E +L D+ F     +   T  +  + V      
Sbjct: 345 LEEIAKESIKRKT-----GARGLRSIIEELLLDVMFEIPSKEGINTCTVTRDNVINKTKP 399

Query: 426 FPS 428
              
Sbjct: 400 ILK 402


>gi|329770553|ref|ZP_08261931.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           sanguinis M325]
 gi|328836302|gb|EGF85971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella
           sanguinis M325]
          Length = 403

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 171/424 (40%), Gaps = 83/424 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVG 65
             P EI++ L+ Y+I Q  AK++VA+A+ N ++R +   ++   +L   NI L+G TG G
Sbjct: 61  LKPHEIMTHLNEYVISQDKAKKSVAVAVYNHYKRIKAKQSNENIDLQKSNIALIGSTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 121 KTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNANYDI----------- 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A    ++S      G 
Sbjct: 170 --EKAEKGII-------------------------YIDEID-KIAKKGENVSITRDVSGE 201

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   +     +   +   ++               M  ++   I  +    
Sbjct: 202 GVQQALLKILEGTIASVPPQGGRKHPGEE---------------MIKINTKDILFIIGGA 246

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              ++E   I  R     IG S+     D   ++           +  + ++        
Sbjct: 247 FSGIEEI--IKRRLGEKVIGFSKSDELNDTGAIIS---------KVKHEDLVKF------ 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GR PV  +L+ LN++D   +LT+ ++++I QY+ L   + + L F +D
Sbjct: 290 -----GIIPEFIGRIPVICYLEELNENDLVRVLTEPKNSVIKQYQYLFSLDNVDLIFEKD 344

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLHIG 424
           ++  +A  ++   +     GAR L++++E +L D+ +     +  KT  I  E V     
Sbjct: 345 ALVEIARESIKRKT-----GARGLRSIIEELLLDVMYDIPSKENIKTCTITRENVLNKTK 399

Query: 425 DFPS 428
               
Sbjct: 400 PLLK 403


>gi|308276961|gb|ADO26860.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Corynebacterium pseudotuberculosis I19]
          Length = 406

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 179/423 (42%), Gaps = 89/423 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------DLRDELMPKNILL 58
           P EI + LD+Y+IGQ DAKR +++A+ N ++R +             D   EL   NIL+
Sbjct: 45  PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 104

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++
Sbjct: 105 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 164

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + +          S TR+V  + ++   +   E           +++
Sbjct: 165 RGIIYV-------DEVDKISRKSDNPSITRDVSGEGVQQALLKILE---------GTVAS 208

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG      +  +L            I   V   +  L +   +R        R   
Sbjct: 209 IPPQGGRKHPNQDFIQL--------DTSNILFIVAGAFAGLEKVIEER--------RGKK 252

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +     +   ++ D+I          V +E +  DL+                      
Sbjct: 253 GIGFGAELTSKEDIDQI---------DVFKEVLPEDLVKF-------------------- 283

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   + +L++     +LT+ +++L+ QY+ L + + +
Sbjct: 284 ------------GLIPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDV 331

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
           +L+F +D+++ +AD+A+   +     GAR L+ +ME +L  + +   D ++   V + A 
Sbjct: 332 VLEFDDDALEIIADLAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAA 386

Query: 418 YVR 420
            VR
Sbjct: 387 SVR 389


>gi|296876431|ref|ZP_06900483.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|312866721|ref|ZP_07726935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
 gi|296432721|gb|EFH18516.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|311097802|gb|EFQ56032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parasanguinis F0405]
          Length = 410

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 165/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R         +   EL   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREDETDVELQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE                +E V  D+                       
Sbjct: 268 GFGKNNKA--IDE-----------SSSYMQEIVAEDIQKF-------------------- 294

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 295 ------------GIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     ++  +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEIPSQEDVKLVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTEKPILE 408


>gi|322389613|ref|ZP_08063161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143612|gb|EFX39042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 410

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 164/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R         +   EL   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREDETDVELQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE                +E V  D+                       
Sbjct: 268 GFGKNNKA--IDE-----------SSSYMQEIVAEDIQKF-------------------- 294

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 295 ------------GIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEIPSQENVKLVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTEKPILE 408


>gi|171910144|ref|ZP_02925614.1| ATP-dependent protease ATP-binding subunit [Verrucomicrobium
           spinosum DSM 4136]
          Length = 423

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 170/425 (40%), Gaps = 92/425 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56
           P +I++ LD ++IGQ  AK+ +++A+ N ++R        D            E+   N+
Sbjct: 62  PADIMAALDHHVIGQAHAKKVLSVAVHNHYKRILSAQASADRKTAAIGEYNDVEIEKSNV 121

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LLVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  
Sbjct: 122 LLVGPTGCGKTLLAKTLARILNVPFSIADATTLTEAGYVGEDVENIILRLLQAADYDVAR 181

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +    +         + I          S TR+V  + ++   +   E           +
Sbjct: 182 AEMGIIYV-------DEIDKIGRKTENVSITRDVSGEGVQQALLKILE---------GTV 225

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            N    GG                                    ++          V+ +
Sbjct: 226 CNVPPQGG-------------------------------RKHPQQEYI-------QVNTE 247

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  +     V LD+F  +  R     +G   E + R+         V  +      D +
Sbjct: 248 NILFICGGAFVGLDQF--MAKRRGRKVMGFGNEMLNREQQDADLTKDVQPE------DLL 299

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
            F             L+PE  GR PV V ++ L + +   +LT+ ++ LI QY +L+  +
Sbjct: 300 GF------------GLIPEFIGRLPVVVAMQQLTEEELVRVLTEPKNALIKQYSKLLGMD 347

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
           G+ L    D++ A+A  A+   +     GAR L++++ER++ D+ +     ++   V + 
Sbjct: 348 GVDLQVNRDALIAMAREALKRGT-----GARGLRSILERIMLDVMYDIPSRRDVRAVTLT 402

Query: 416 AEYVR 420
              V+
Sbjct: 403 EAVVK 407


>gi|240143620|ref|ZP_04742221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|257204367|gb|EEV02652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
          Length = 514

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 158/421 (37%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 163 PHKIKASLDEYVVGQEHAKKVMSVAVYNHYKRIASDEKDGIEIEKSNMLMIGPTGSGKTY 222

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 223 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 276

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 277 -----FIDEIDKIAKKRNTNQR---------------DVSGESVQQGMLKLLEGAEVEVP 316

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M     K I       +PEL        I  + +++ +           
Sbjct: 317 VGASSKNAMVPMTMVNTKNILFICGGAFPELED------IIKERLNKSA----------- 359

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                 I  +          E + + +                                R
Sbjct: 360 -----SIGFKSELKDKYDQDENILQKVT---------------------------IEDVR 387

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ 
Sbjct: 388 KFGMIPEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALM 447

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A         +GAR L+ ++E  + DI +    D     V I  EYV    G   
Sbjct: 448 AIAKQAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVEKKGGPLI 502

Query: 428 S 428
           +
Sbjct: 503 T 503


>gi|238923551|ref|YP_002937067.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale
           ATCC 33656]
 gi|238875226|gb|ACR74933.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale
           ATCC 33656]
          Length = 509

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 173/439 (39%), Gaps = 100/439 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------------EL 51
           P  I + LD Y++GQ+ AK+ +++A+ N ++R       +                  E+
Sbjct: 139 PHRIKASLDDYVVGQEHAKKVMSVAVYNHYKRVMADNKHKAQEENTTAKQASNKYDGVEI 198

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A 
Sbjct: 199 EKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAD 258

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVA 170
           N V  +          I  +E  +D L  K   +N R+V  + ++ G +   E  ++EV 
Sbjct: 259 NDVERAEH------GIIFIDE--IDKL-AKKRNANQRDVSGESVQQGMLKLLEGSEVEVP 309

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +S  +                      M +   + I       +P L     +RL   
Sbjct: 310 VGASSKNAMVP------------------MTTVDTRNILFICGGAFPGLEDIIKERLNKE 351

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            ++   +            D  DK              +G +  L+              
Sbjct: 352 ASIGFKA------------DLKDK-------------YDGDENLLMQ------------- 373

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            R   ++PE  GR P+   L++L +     IL + ++ +I QY+
Sbjct: 374 -----------ATVDDIRKFGMIPEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQ 422

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L++ + + L+F +D++ A+A +A         +GAR L+ ++E  + DI +    D   
Sbjct: 423 KLLEMDEVRLEFDDDALYAIAKMAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNI 477

Query: 410 KTVVIDAEYVRLHIGDFPS 428
            TV I  +YV    G    
Sbjct: 478 GTVTITKDYVEKKGGPLIQ 496


>gi|291537251|emb|CBL10363.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis M50/1]
          Length = 517

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 157/420 (37%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 163 PHKIKASLDEYVVGQEHAKKVMSVAVYNHYKRIASDEKDGIEIEKSNMLMIGPTGSGKTY 222

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 223 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 276

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 277 -----FIDEIDKIAKKRNTNQR---------------DVSGESVQQGMLKLLEGAEVEVP 316

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M     K I       +PEL        I  + +++ +           
Sbjct: 317 VGASSKNAMVPMTMVNTKNILFICGGAFPELED------IIKERLNKSA----------- 359

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                 I  +          E + + +                                R
Sbjct: 360 -----SIGFKSELKDKYDQDENILQKVT---------------------------IEDVR 387

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L++L +     IL + ++ ++ QY++L+  + + L+F +D++ 
Sbjct: 388 KFGMIPEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALM 447

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A         +GAR L+ ++E  + DI +    D     V I  EYV    G   
Sbjct: 448 AIAKQAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVEKKGGPLI 502


>gi|167627760|ref|YP_001678260.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597761|gb|ABZ87759.1| ATP-dependent Clp protease subunit X [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 417

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 175/424 (41%), Gaps = 82/424 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ + K+ +++A+ N ++R       D   EL   N+LL+GPTG G
Sbjct: 58  KPIEIKKYLDDYIIGQDNPKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        + S TR+V  + ++   +   E                     
Sbjct: 176 -----IDEIDKIARKSESASITRDVSGEGVQQALLKLIE--------------------- 209

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                      S V   G +K                      + D +  D+  ++   G
Sbjct: 210 --------GTVSSVPPKGGRKHP--------------------NQDMIQVDTSDILFICG 241

Query: 246 IVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F    +K+V  R     IG + + +Q+                S++T+ ++       
Sbjct: 242 GAFAG-IEKVVKHRMDKVSIGFNADVIQQK--------------NSLDTEKLMQKVES-- 284

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR P+   L  L + D   ILT+ ++ LI QY +L K + + ++F++
Sbjct: 285 EDLTRFGLIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSD 344

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++  +A  A+   +     GAR L+T++E VL ++ F      + + V+I+ + +    
Sbjct: 345 QALVEIAKKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIINDKVILEQE 399

Query: 424 GDFP 427
               
Sbjct: 400 EPIL 403


>gi|163753151|ref|ZP_02160275.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
 gi|161326883|gb|EDP98208.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1]
          Length = 410

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 170/421 (40%), Gaps = 80/421 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P++I + LD +IIGQ   K+ +++A+ N ++R  Q P     E+   NI++VG TG GK
Sbjct: 61  KPKQIKAFLDEFIIGQGATKKVMSVAVYNHYKRLLQAPTKDDIEIQKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + ++ R  V    
Sbjct: 121 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAERGIV---- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 177 ----------------------------------FIDEID-KIARKSDNPSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    K   +                + I    V+ ++I  +     
Sbjct: 202 VQQALLKLLEGTVVNVPPKGGRKHP------------DQKFI---EVNTENILFIAGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +D    I  R +   +G S    +                  I+TD++L         
Sbjct: 247 DGIDRV--ITRRLNMQAVGYSASKDEEA----------------IDTDNLL--QYIIPKD 286

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  H+  L+ +  R ILT+ ++ +I QYK+L + + I  D TE +
Sbjct: 287 LKDFGLIPEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFEMDSIEFDITEGA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++ + + A+        +GAR L+++ E +L D  F      EK + I   Y    +   
Sbjct: 347 LEFIVEKAIQYK-----LGARGLRSLCETILTDAMFDLPGSDEKELKITKTYAEKKLSKV 401

Query: 427 P 427
            
Sbjct: 402 A 402


>gi|322387323|ref|ZP_08060933.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141852|gb|EFX37347.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           infantis ATCC 700779]
          Length = 410

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +  KTV I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTAKPILE 408


>gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas
           testosteroni CNB-2]
 gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas
           testosteroni CNB-2]
          Length = 420

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 162/401 (40%), Gaps = 81/401 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R            EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDVERAQRGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 218

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + +   G +K                      D   +   +I  + + 
Sbjct: 219 ---------GTMASIPPQGGRKHPNQ------------------DFLQIDTTNILFICSG 251

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R   +GIG          +   +  S+S  +  I  + ++       
Sbjct: 252 AFAGLEKV--IENRTEASGIGFG------ATVKSKKQRSISEMFLEIEPEDLIKF----- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 299 ------GIIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRP 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
            ++ A+A  A+   +     GAR L++++E+ L    F   
Sbjct: 353 AALKAIARKALARKT-----GARGLRSIVEQALISTMFELP 388


>gi|310778379|ref|YP_003966712.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
 gi|309747702|gb|ADO82364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter
           polytropus DSM 2926]
          Length = 416

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 172/434 (39%), Gaps = 92/434 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTG 63
             P+EI + LD Y+IGQ+ AK+ +A+++ N ++R        +   EL   N+LL+GPTG
Sbjct: 65  LKPKEIKTSLDEYVIGQEHAKKVLAVSVYNHYKRILHKDKREESDVELQKSNVLLIGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + R  + 
Sbjct: 125 SGKTLLAQTLARTLHVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVDAAERGIIY 184

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I         TS TR+V  + ++                           
Sbjct: 185 -------IDEIDKIARKSENTSITRDVSGEGVQQA------------------------- 212

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                          ++      K ++  Q       ++    LI++DT    +I  V  
Sbjct: 213 ---------------LLKIIEGTKAQVPPQGGRKHPHQE----LIEIDT---SNILFVVG 250

Query: 244 YGIVFLDEFDKIVARDSGNGIGV-----SREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                LD+  K   +    G G      S+E     L  ++    V              
Sbjct: 251 GAFEGLDKVIKSRTKKKVIGFGADMKYDSKESEDETLSKVLPEDLVK------------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE+ GR PV   L+ L++     IL + ++ +I QYK+  + E +
Sbjct: 298 -----------HGLIPELIGRLPVLTTLEHLDEDALISILVEPKNAIIKQYKKFFEFEEV 346

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F ED++  +A +A++       IGAR L++++E  +  + +      + + ++I   
Sbjct: 347 KLEFEEDALKRIAHMAIDRK-----IGARGLRSILESTMLALMYEVPSSGDVEKIIITEG 401

Query: 418 YVRLHIGDFPSETD 431
            V         + +
Sbjct: 402 AVSNSKEAVIVKKE 415


>gi|322391568|ref|ZP_08065037.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
 gi|321145651|gb|EFX41043.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           peroris ATCC 700780]
          Length = 410

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +  KTV I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTAKPILE 408


>gi|149196343|ref|ZP_01873398.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149140604|gb|EDM29002.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 429

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 178/433 (41%), Gaps = 96/433 (22%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRD-ELMPKN 55
           K+ FN  +P+EI   LD Y+IGQ  AKR +++A+ N ++R Q     P    D E+   N
Sbjct: 63  KIPFNLLAPKEIKHVLDDYVIGQDYAKRTLSVAVYNHYKRVQNNLFHPEGAHDLEMEKSN 122

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +LL+GP+G GKT +++ LA++   PF   + T  TE GYVG +VE II  L+  A   + 
Sbjct: 123 VLLLGPSGCGKTLLAKTLAKVLDVPFTIFDATTVTEAGYVGEDVENIILRLIQAADGDIE 182

Query: 116 ESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +++      DE+ ++A                  S TR+V  + ++   +      IE  
Sbjct: 183 KAQYGIIYVDEIDKKAKK------------GENMSITRDVSGEGVQQSLLKI----IEGT 226

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +                ++   +                    +  L        +  
Sbjct: 227 HCNVPPKGGRKHPNQDYIQIDTRNIL-------------FICAGAFVGLED------VIR 267

Query: 231 DTVHRDSIQMVENYGIVFLD-EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
             + R  I   +    V  D E ++I+       +                      KYG
Sbjct: 268 GRLGRRVIGFADQGNGVKSDAEIEEIMREVEPGDL---------------------VKYG 306

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I                      PE+ GR PV   L  L + D   ILT+ ++++I QY
Sbjct: 307 LI----------------------PELIGRLPVISTLNPLKEEDLVHILTNVKNSIIKQY 344

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           + ++ ++GI L F+++++  +A  A++  +     GAR L++++E+ + ++ F      +
Sbjct: 345 QYILMSDGIKLSFSDEALKEMAHQAIDKGT-----GARGLRSILEKSMLELMFELPSRTD 399

Query: 410 -KTVVIDAEYVRL 421
            + V+I  E+V  
Sbjct: 400 VEEVIISKEFVSE 412


>gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
 gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
          Length = 420

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 162/401 (40%), Gaps = 81/401 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R            EL   NILL+GPTG 
Sbjct: 66  TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LAR    PF+  + T  TE GYVG +VE II+ L+      V  ++R  V  
Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDVERAQRGIVY- 184

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +   E                    
Sbjct: 185 ------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-------------------- 218

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                       + +   G +K                      D   +   +I  + + 
Sbjct: 219 ---------GTMASIPPQGGRKHPNQ------------------DFLQIDTTNILFICSG 251

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               L++   I  R   +GIG          +   +  S+S  +  I  + ++       
Sbjct: 252 AFAGLEKV--IENRTEASGIGFG------ATVKSKKQRSISEMFLEIEPEDLIKF----- 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE+ GR PV   L  L++     ILT+ ++ L+ QY +L+  EG+ L+   
Sbjct: 299 ------GIIPELVGRMPVVTALAELSEEALVQILTEPKNALVKQYSKLLAMEGVELEIRP 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
            ++ A+A  A+   +     GAR L++++E+ L    F   
Sbjct: 353 AALKAIARKALARKT-----GARGLRSIVEQALISTMFELP 388


>gi|296118753|ref|ZP_06837329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968242|gb|EFG81491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 431

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 171/428 (39%), Gaps = 94/428 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELMP 53
           P EI S LD+Y+IGQ  AKR +++A+ N ++R +                  D   E+  
Sbjct: 65  PSEISSFLDKYVIGQDAAKRVLSVAVYNHYKRIKAEESQAAAASSSRKSAKADEEVEISK 124

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NIL++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   
Sbjct: 125 SNILMLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFD 184

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V  + R  +         + +          S TR+V  + ++   +   E  +     S
Sbjct: 185 VDRASRGIIYV-------DEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTV----AS 233

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                           L+ S +                V   +  L +      +  + V
Sbjct: 234 IPPQGGRKHPNQEFIQLDTSNIL-------------FIVAGAFAGLEK------VIAERV 274

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            +  +                      G+ +    E  + D+   V    +  K+G    
Sbjct: 275 GKKGVGF--------------------GSKLDTQEERERVDMFEKVRPEDL-VKFG---- 309

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR PV   +++L++     +LT+ +++L+ QY+ L 
Sbjct: 310 ------------------LIPEFIGRLPVVATVENLDQDSLVKVLTEPKNSLVKQYQRLF 351

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + +G  LD    +++ +AD+A+   +     GAR L+ ++E +L  + +   D  +  TV
Sbjct: 352 EMDGAHLDIEPGALNEIADLALERKT-----GARGLRAILEELLVPVMYDLPDRDDIDTV 406

Query: 413 VIDAEYVR 420
            + AE VR
Sbjct: 407 RLTAEAVR 414


>gi|241889844|ref|ZP_04777142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella
           haemolysans ATCC 10379]
 gi|241863466|gb|EER67850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella
           haemolysans ATCC 10379]
          Length = 402

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/423 (21%), Positives = 173/423 (40%), Gaps = 82/423 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I+  L+ Y+I Q  AK++VA+A+ N ++R     +   EL   NI L+G TG GK
Sbjct: 61  LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIIAKENNDIELQKSNIALIGSTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +            
Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSADYDI------------ 168

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A    ++S      G  
Sbjct: 169 -ERAEKGII-------------------------YIDEID-KIAKKGENVSITRDVSGEG 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V     +   +   ++               M  ++  +I  +     
Sbjct: 202 VQQALLKILEGTVASVPPQGGRKHPGEE---------------MIKINTKNILFIIGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++E   I  R     IG S+     D   ++           +  + ++         
Sbjct: 247 SGIEEI--IKRRLGEKVIGFSKSDELNDNEDIIS---------KVKHEDLVKF------- 288

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GR PV  +L+ L++ D   +LT+ +++++ QY+ L + +G+ L F +++
Sbjct: 289 ----GMIPEFIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFELDGVKLVFEKEA 344

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           ++ +A  ++   +     GAR L++++E +L D+ F     ++ KT  +  + V      
Sbjct: 345 LEEIAKESIKRKT-----GARGLRSIIEELLLDVMFEIPSKKDIKTCTVTRDNVINKTKP 399

Query: 426 FPS 428
              
Sbjct: 400 ILK 402


>gi|291528240|emb|CBK93826.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Eubacterium rectale M104/1]
          Length = 509

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 173/439 (39%), Gaps = 100/439 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------------EL 51
           P  I + LD Y++GQ+ AK+ +++A+ N ++R       +                  E+
Sbjct: 139 PHRIKASLDDYVVGQEHAKKVMSVAVYNHYKRVMADNKHKAQEENTTAKQASNKYDGVEI 198

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A 
Sbjct: 199 EKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAD 258

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVA 170
           N V  +          I  +E  +D L  K   +N R+V  + ++ G +   E  ++EV 
Sbjct: 259 NDVERAEH------GIIFIDE--IDKL-AKKRNANQRDVSGESVQQGMLKLLEGSEVEVP 309

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +S  +                      M +   + I       +P L     +RL   
Sbjct: 310 VGASSKNAMVP------------------MTTVDTRNILFICGGAFPGLEDIIKERLNKE 351

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            ++   +            D  DK              +G +  L+              
Sbjct: 352 ASIGFKA------------DLKDK-------------YDGDENLLMQ------------- 373

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            R   ++PE  GR P+   L++L +     IL + ++ +I QY+
Sbjct: 374 -----------ATVDDIRKFGMIPEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQ 422

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L++ + + L+F +D++ A+A +A         +GAR L+ ++E  + DI +    D   
Sbjct: 423 KLLEMDEVRLEFDDDALYAIAKMAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNI 477

Query: 410 KTVVIDAEYVRLHIGDFPS 428
            TV I  +YV    G    
Sbjct: 478 GTVTITKDYVEKKGGPLIQ 496


>gi|224534186|ref|ZP_03674765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
 gi|224514547|gb|EEF84862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           spielmanii A14S]
          Length = 435

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        D  E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 128 KTLLAKTLASEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 176

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 177 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 208

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 209 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 253

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 254 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 296

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ L+K D   IL D +++++ QY  + K + + L F +D
Sbjct: 297 FG----LIPEFVGRLPVHSYLEKLSKEDLMRILVDPQNSIVKQYYYMFKMDNVELVFEKD 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E +L+D+ F    + + K V++  E V
Sbjct: 353 ALESIVDEAILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKESV 402


>gi|295110618|emb|CBL24571.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus obeum A2-162]
          Length = 480

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 159/413 (38%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ+ AK+ +++A+ N ++R          +   N+L++GPTG GKT 
Sbjct: 127 PHKIKATLDEYVIGQEYAKKVMSVAVYNHYKRVATDTMDEIAIEKSNMLMIGPTGCGKTY 186

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++    +      
Sbjct: 187 LVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEHGII------ 240

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 241 -----FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGMLKLLEGSDVEVP 280

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   + I       +P+L     +RL    ++              +
Sbjct: 281 VGANSKNAMVPLTTVNTRNILFICGGAFPDLENIIKERLNKQASI------------GFY 328

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   D   L+E  +V                       R
Sbjct: 329 ADLKDK-----------------YDDDPNLLEKVTV--------------------DDLR 351

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   +  L +     IL +  + ++ QY++L+  + + L+F ED++ 
Sbjct: 352 NFGMIPEFIGRLPIIFTMNGLTEDMMVQILREPRNAILKQYQKLLALDEVKLEFEEDALR 411

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+A  A+  ++     GAR L+ ++E  + DI +    D     VVI   Y+ 
Sbjct: 412 AIAAKAMEKHT-----GARALRAILEEYMLDIMYEIPKDDNIGEVVITRGYIE 459


>gi|291525663|emb|CBK91250.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Eubacterium rectale DSM 17629]
          Length = 509

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 173/439 (39%), Gaps = 100/439 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------------EL 51
           P  I + LD Y++GQ+ AK+ +++A+ N ++R       +                  E+
Sbjct: 139 PHRIKASLDDYVVGQEHAKKVMSVAVYNHYKRVMADNKHKAQEENTTAKQASNKYDGVEI 198

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              N+L++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A 
Sbjct: 199 EKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAD 258

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVA 170
           N V  +          I  +E  +D L  K   +N R+V  + ++ G +   E  ++EV 
Sbjct: 259 NDVERAEH------GIIFIDE--IDKL-AKKRNANQRDVSGESVQQGMLKLLEGSEVEVP 309

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +S  +                      M +   + I       +P L     +RL   
Sbjct: 310 VGASSKNAMVP------------------MTTVDTRNILFICGGAFPGLEDIIKERLNKE 351

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            ++   +            D  DK              +G +  L+              
Sbjct: 352 ASIGFKA------------DLKDK-------------YDGDENLLMQ------------- 373

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            R   ++PE  GR P+   L++L +     IL + ++ +I QY+
Sbjct: 374 -----------ATVDDIRKFGMIPEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQ 422

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L++ + + L+F +D++ A+A +A         +GAR L+ ++E  + DI +    D   
Sbjct: 423 KLLEMDEVRLEFDDDALYAIAKMAKEKK-----VGARALRAIIEDFMLDIMYEIPKDDNI 477

Query: 410 KTVVIDAEYVRLHIGDFPS 428
            TV I  +YV    G    
Sbjct: 478 GTVTITKDYVEKKGGPLIQ 496


>gi|326489807|dbj|BAJ93977.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 619

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 176/433 (40%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R                           
Sbjct: 202 TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRVYNATVQKGSADNSGCPDAANDDHDNV 261

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I++ L+  
Sbjct: 262 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLLVE 321

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSN-TREVFRKKLRDGEISDKEIDIE 168
           A   V+ +++  V        +E  +D +  K  ++N +R+V  + ++   +   E  + 
Sbjct: 322 AEYNVQAAQQGIV------YIDE--VDKITKKAESANVSRDVSGEGVQQALLKILEGTVV 373

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                    N                           K I       + +L +  S+R  
Sbjct: 374 TIPEKGSRKNS-----------------RNDSIQIDTKDILFICGGAFVDLEKTISERRQ 416

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D       SI                   R +    GV+   V   LL  VE   ++ K+
Sbjct: 417 D------SSIGFGAPI-------------RTNIRSSGVTSPTVTSSLLESVESGDLA-KF 456

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G                      L+PE  GR P+ V L +LN+     +LT+ +++L  Q
Sbjct: 457 G----------------------LIPEFIGRLPILVSLAALNEDQLVQVLTEPKNSLSRQ 494

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+++     + L FT+ ++  +A  A+  N+     GAR L+ ++E +L +  +   D +
Sbjct: 495 YRKMFSLNNVKLHFTDGALRIVAKKAIVKNT-----GARGLRVILETILLEAMYEIPDEK 549

Query: 409 EKTVVIDAEYVRL 421
                +DA  V  
Sbjct: 550 AGNERVDAVVVDE 562


>gi|224129802|ref|XP_002328806.1| predicted protein [Populus trichocarpa]
 gi|222839104|gb|EEE77455.1| predicted protein [Populus trichocarpa]
          Length = 521

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/442 (21%), Positives = 171/442 (38%), Gaps = 93/442 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+EI   LD ++IGQ  AK+ +++A+ N ++R    +  +                   
Sbjct: 114 TPKEICKGLDEFVIGQDKAKKVLSVAVYNHYKRIYHASKQKKSHAPWSHSDGENDENEFI 173

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-------IGYVGRNVEQI 102
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+        GYVG +VE I
Sbjct: 174 ELDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATTLTQASLFCCTAGYVGEDVESI 233

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD---GE 159
           +  L+ VA   V  ++R  V          ++ D  V   ++S  R+V  + ++      
Sbjct: 234 LYKLLVVAEFNVEAAQRGIVYIDEVDKITMKVYDFCVQAGSSSIGRDVSGEGVQQALLKM 293

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           +    I++ V D                                     +          
Sbjct: 294 LEGTVINVPVPDKGPG---------------------------------KHPRGD----- 315

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
                       T+  D+  ++   G  F++    I  R     IG             +
Sbjct: 316 ------------TIQVDTKDILFICGGAFVNLEKTISERRQDASIGFGAPVRANMRAGAI 363

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
             + V        T  +L        V+    L+PE  GRFPV   L +LN+     +L 
Sbjct: 364 TNAMV--------TSSLLESVESGDLVA--YGLIPEFVGRFPVLASLLALNEDQLVQVLM 413

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L  QYK++     + L FT +++  +A  A+  N+     GAR L+ ++E +L +
Sbjct: 414 EPKNALGKQYKKIFNMNNVNLHFTGNALRLIAKKAMTKNT-----GARGLRAILENILTE 468

Query: 400 ISFSASDLQEKTVVIDAEYVRL 421
             F   + + ++  I A  V  
Sbjct: 469 AMFETPENKSQSNCITAVLVDE 490


>gi|307823842|ref|ZP_07654070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
 gi|307735136|gb|EFO05985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter
           tundripaludum SV96]
          Length = 423

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/421 (24%), Positives = 177/421 (42%), Gaps = 87/421 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLVG 60
           P +I   LDRYIIGQ  AK  +A+A+ N ++R +  +        D   E+   NILL+G
Sbjct: 61  PAKIKEHLDRYIIGQHLAKEILAVAVYNHYKRLKHESGDAGLGEFDKDVEIGKSNILLIG 120

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           P+G GKT ++  LA++ G PF+  + T  T+ GYVG +VE I+  L+DVA   +  +   
Sbjct: 121 PSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVENILVRLLDVAEGNMLNAEWG 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V         + I          + TR+V  + ++   +      +E +         +
Sbjct: 181 IVY-------LDEIDKIARSPEQQTGTRDVSGEGVQQALLRL----VEGSHVKIPAKGRN 229

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G  ++   N+  +                    +P L +    RL+            
Sbjct: 230 KDGETTMDTRNILFIAGG----------------SFPGLEKHVEKRLV------------ 261

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             N  I F  E +K   + S             D+L   + S +  K+G I         
Sbjct: 262 PSNSAIGFHAEVNKTAEKPS-----------LDDMLNATQPSDLR-KFGLI--------- 300

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                        PE  GRFPV   L++L+      +LT+ ++ L+ QY++L   EG+ L
Sbjct: 301 -------------PEFIGRFPVLAPLEALDVDALIRVLTEPKNALVRQYQQLFAYEGVEL 347

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            F +D++  +A  A+   +     GAR L+++ME++L    F      + +  ++DA+ V
Sbjct: 348 KFEQDALVEIAQKAIERET-----GARGLRSIMEQILRKTMFDIPSSDDVEQCIVDADVV 402

Query: 420 R 420
           +
Sbjct: 403 K 403


>gi|12322385|gb|AAG51217.1|AC051630_14 CLP protease regulatory subunit CLPX, putative; 15869-19379
           [Arabidopsis thaliana]
          Length = 670

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 170/452 (37%), Gaps = 109/452 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
           +P+EI   LD+++IGQ  AK+ +++A+ N ++R                           
Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLLHDSDALSPFNPLWFTL 310

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                           D   EL   N+LL+GPTG GKT +++ LARL   PF+  + T  
Sbjct: 311 ILWTLNPRSAAQPIDDDDNVELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTL 370

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTRE 149
           T+ GYVG +VE I+  L+ VA   V+ +++  V            +D +   T  + +  
Sbjct: 371 TQAGYVGDDVESILHKLLTVAEFNVQAAQQGIVY-----------IDEVDKITKKAESLN 419

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           + R                                  V    + +   K++       + 
Sbjct: 420 ISR---------------------------------DVSGEGVQQALLKLLEGTI---VN 443

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           +  +        D     ID   +       +   G  F+D    IV R   + IG    
Sbjct: 444 VPGKGARKHPRGDHIQ--IDTKDI-------LFICGGAFVDLEKTIVDRRQDSSIGFGAP 494

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329
                    V   ++        T  +L     A        L+PE  GRFP+ V L +L
Sbjct: 495 VRANMATSGVTSGAI--------TSSLLESVESA--DLTAYGLIPEFVGRFPILVSLSAL 544

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            +     +L + ++ L  QYK+L     + L FTE +++ ++  A+  N+     GAR L
Sbjct: 545 TEDQLIRVLVEPKNALGKQYKKLFSMNNVKLHFTEKALEIISKQAMVKNT-----GARGL 599

Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           + ++E +L +  F   D ++    IDA  V  
Sbjct: 600 RALLESILTEAMFEIPDDKKGDERIDAVIVDE 631


>gi|168043143|ref|XP_001774045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674591|gb|EDQ61097.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 392

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 173/425 (40%), Gaps = 84/425 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVG 60
           +PREI   LD++++GQ+ AK+ +++A+ N ++R            D   EL   N+LL+G
Sbjct: 12  TPREICQALDKFVVGQERAKKILSVAVYNHYKRIYHESVQKGSEEDDVVELEKSNVLLMG 71

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR    PFI  + T  T+ GYVG +VE I+  L+ V+   V  +++ 
Sbjct: 72  PTGSGKTLLAKTLARFVNVPFIIADATTLTQAGYVGEDVESILYKLLMVSEFNVPAAQQG 131

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V                                         E+D ++   +  +S   
Sbjct: 132 IV--------------------------------------YIDEVD-KITKKAESVSISR 152

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   ++    K   +                     D +  D+  +
Sbjct: 153 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG-----------------DHIQIDTKDI 195

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F++    +  R   + IG             +  S++        T  +L + 
Sbjct: 196 LFICGGAFIELAKTVAERKQDSSIGFGSPVRASMRGNKLTDSAI--------TSSLLEMV 247

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             +  +S    L+PE  GRFPV V L +LN+     +LT+  + L  QYK++     + L
Sbjct: 248 ESSDLIS--YGLIPEFIGRFPVLVSLSALNEDQLVQVLTEPRNALGKQYKKMFSMNNVKL 305

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL------QEKTVVI 414
            +T+ ++  +A  A+  N+     GAR L+++ME +L +  +   D           VV+
Sbjct: 306 HYTDGALRRIAQKAIVKNT-----GARGLRSIMETLLTEAMYQVPDTILNRDEHVDAVVL 360

Query: 415 DAEYV 419
           D E V
Sbjct: 361 DEEAV 365


>gi|256750735|ref|ZP_05491620.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750318|gb|EEU63337.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 208

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 105/208 (50%), Positives = 153/208 (73%)

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
           MD V  ++I+  EN GI+F+DE DKI +     G  VSREGVQRD+LP++EG +V TKYG
Sbjct: 1   MDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPIIEGCTVMTKYG 60

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV LK L K DF  IL + ++ L  QY
Sbjct: 61  PVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVTLKPLTKEDFIKILKEPKNALTKQY 120

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +EL++TEGI + +T+++I+A+A+VA  +N    DIGARRL TVME++ E++SF+A +L  
Sbjct: 121 QELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEELSFNAPELGG 180

Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +VI  EYV+  + D  ++ ++  +IL
Sbjct: 181 QQIVITEEYVKEQLKDSLNKYEVNKYIL 208


>gi|237838211|ref|XP_002368403.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49]
 gi|211966067|gb|EEB01263.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49]
          Length = 567

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 113/249 (45%), Positives = 169/249 (67%), Gaps = 3/249 (1%)

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           +S+  SK       +   ++V++   +LM+ E D +I  D V + +++ VE  GIVF+DE
Sbjct: 319 ISDRISKRRSGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDE 378

Query: 252 FDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
            DKI ++   NG     S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH  RP
Sbjct: 379 IDKICSKGGRNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRP 438

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
           +DLL E+QGR P+RV LKSL ++D R ILT T++NL+ Q   L++TE + L FTE++++ 
Sbjct: 439 SDLLAELQGRLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNE 498

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDFPS 428
           +A VA  +N++V +IGARRL T++E+++EDI+F+A  +     V +D E VR  +    +
Sbjct: 499 IARVACEVNASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLT 558

Query: 429 ETDMYHFIL 437
           +TD   F+L
Sbjct: 559 KTDYTRFVL 567



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 3/199 (1%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70
           +V  L+R+I+GQ +AKRAVA+ALR RWRR+ +  + LR+++ PKNILL+GPTGVGKT ++
Sbjct: 1   MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVA 60

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           RRLA+   APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+   R   ++ +R  A   A
Sbjct: 61  RRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMRPAAEHRA 120

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           E +IL+AL+GK      +   R  LR G +  + + ++     S             G  
Sbjct: 121 ERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPSG-GAASGGSFTEEGNR 178

Query: 191 NLSELFSKVMGSGRKKKIR 209
           + SEL  +     +  +  
Sbjct: 179 DASELLQQTQTQVKASRKE 197


>gi|19553586|ref|NP_601588.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391230|ref|YP_226632.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           glutamicum ATCC 13032]
 gi|23813853|sp|Q8NN26|CLPX_CORGL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21325158|dbj|BAB99780.1| ATP-dependent protease Clp, ATPase subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326570|emb|CAF21052.1| PROBABLE ATP-DEPENDENT PROTEASE (ATP-BINDING SPECIFICITY SUBUNIT)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 426

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 173/422 (40%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P EI + LD Y+IGQ  AKR +++A+ N ++R +           +   EL+  NIL++
Sbjct: 65  KPSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILML 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R
Sbjct: 125 GPTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQR 184

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + +          S TR+V  + ++   +   E  +            
Sbjct: 185 GIIY-------IDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGG---- 233

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++         I   V   +  L +  +DR             
Sbjct: 234 -------------RKHPNQDFIQLDTTNILFIVAGAFSGLEKVIADRN------------ 268

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                             +  G G+ VS +  + +++ + +          +  D + F 
Sbjct: 269 ----------------GKKGLGFGVEVSSKKEEANIVDIFKDV--------LPEDLVKF- 303

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   + +L++     +LT+  ++L+ QY+ L + +  +
Sbjct: 304 -----------GLIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYRRLFEMDDAV 352

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L FT+D+++ +A+ A+   +     GAR L+ +ME +L  I +   D ++   V+I+   
Sbjct: 353 LTFTDDALEEIANQALERKT-----GARGLRAIMEEILVPIMYDLPDRKDVGEVIINGAV 407

Query: 419 VR 420
            R
Sbjct: 408 AR 409


>gi|300214643|gb|ADJ79059.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           salivarius CECT 5713]
          Length = 205

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 99/201 (49%), Positives = 137/201 (68%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I+  EN GI+F+DE DKI ++   N   VSREGVQRD+LP+VEGS +STKYG I TDHI
Sbjct: 5   AIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQRDILPIVEGSQISTKYGLIKTDHI 64

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+  DF  ILT+  + L+ QY  ++ T+
Sbjct: 65  LFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVDDFVKILTEPNNALVKQYIAMIGTD 124

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I + FT ++I  +A+VA  LN    +IGARRL T++E++LED+ F   D+Q   + I  
Sbjct: 125 NIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTILEKLLEDLLFEGPDMQMGDIKITE 184

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
            YV   IG    + D+  +IL
Sbjct: 185 AYVNDKIGSIVEDKDLSQYIL 205


>gi|154277104|ref|XP_001539397.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414470|gb|EDN09835.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 617

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 179/481 (37%), Gaps = 87/481 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------------- 50
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E                
Sbjct: 88  LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147

Query: 51  ----------------------------------LMPKNILLVGPTGVGKTAISRRLARL 76
                                             L   NILL+GP+GVGKT +++ LAR+
Sbjct: 148 HPIESQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARV 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAE 131
              PF   + T FT+ GY+G + +  +  L+  A   V ++       DEV + A+    
Sbjct: 208 LSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAEWGIICLDEVDKLAAAKV- 266

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                         +   V +  L+  E +  +I  +    +S  S       ++ G   
Sbjct: 267 --------SHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNASRSSGSHNSSPSTTGSNF 318

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDES----DRLIDMDTVHRDSIQMVENYGIV 247
               FS        K    +V+      +   +    +++I MD + R SI   +     
Sbjct: 319 GGSSFSSTPPGVPGKPEVYNVRTDNILFIFSGAFVGLNKMI-MDRISRGSIGFGQPIRAS 377

Query: 248 FLDEFDKIVARDSGNGI-----GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                    +  +         G   E + +  LP    + + +  GS   +   F    
Sbjct: 378 SNSFSSHNSSHAASTAPIPILPGSEEEALYKKHLPFFTPAPLPSGSGSPVEEPTYF---N 434

Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
              +  P DL     +PE+ GR PV   L  L       ILT+  ++L+ QY  L    G
Sbjct: 435 PLDLLTPVDLQTYGFIPELVGRIPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSG 494

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L FT  +   +A  A+++ +     GAR L+T ME +L D  F A     K V+I   
Sbjct: 495 IELRFTTPARHKIASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLITEA 549

Query: 418 Y 418
            
Sbjct: 550 V 550


>gi|322375632|ref|ZP_08050144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
 gi|321279340|gb|EFX56381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C300]
          Length = 410

 Score =  256 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREETEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE        S     +  E +Q              K+G I       
Sbjct: 268 GFGQNNKA--IDE-------KSSYMQEIIAEDIQ--------------KFGII------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F +D++  +A+ A+   +     GAR L++++E  + D+ F     +  KTV I  E
Sbjct: 343 ELEFDDDALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTAKPILE 408


>gi|15594957|ref|NP_212746.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia
           burgdorferi B31]
 gi|195941432|ref|ZP_03086814.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi
           80a]
 gi|218249658|ref|YP_002375117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi ZS7]
 gi|221218047|ref|ZP_03589513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 72a]
 gi|223889057|ref|ZP_03623647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 64b]
 gi|224533641|ref|ZP_03674230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi CA-11.2a]
 gi|225549555|ref|ZP_03770521.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 118a]
 gi|6225164|sp|O51557|CLPX_BORBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2688531|gb|AAC66963.1| ATP-dependent Clp protease, subunit X (clpX) [Borrelia burgdorferi
           B31]
 gi|218164846|gb|ACK74907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi ZS7]
 gi|221191995|gb|EEE18216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 72a]
 gi|223885483|gb|EEF56583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 64b]
 gi|224513314|gb|EEF83676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi CA-11.2a]
 gi|225369832|gb|EEG99279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 118a]
 gi|312148054|gb|ADQ30713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi JD1]
          Length = 430

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 172 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 204 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 249 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D
Sbjct: 292 FG----LIPEFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 348 ALESIVDEAILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397


>gi|216264379|ref|ZP_03436371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 156a]
 gi|215980852|gb|EEC21659.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 156a]
          Length = 430

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 172 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 204 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 249 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D
Sbjct: 292 FG----LIPEFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 348 ALESIVDEAILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397


>gi|317026128|ref|XP_001389032.2| ATP-dependent Clp protease [Aspergillus niger CBS 513.88]
          Length = 666

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 108/493 (21%), Positives = 181/493 (36%), Gaps = 98/493 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM------------ 52
           +PR +   LD++++GQ  AK+ +++A+ N ++R    Q   +   EL+            
Sbjct: 136 TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 195

Query: 53  ---------------------------------------PKNILLVGPTGVGKTAISRRL 73
                                                    NILL+GP+GVGKT +++ L
Sbjct: 196 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 255

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV + A+ 
Sbjct: 256 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAA 315

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                      GK  +    +    KL +G     +   E +      S    P    +G
Sbjct: 316 KVSH-------GKDVSGEGVQQALLKLIEGTTVQVQAKQERSAPRVGNSPNTFPSNNPLG 368

Query: 189 ILNLSELFSKVMGSGRKKKIR-----MSVQKCYPELMRDESDRLIDMDTVHRDSI---QM 240
               +     +   G    +R           +  L +      + MD + R SI   Q 
Sbjct: 369 NSPFNPNGGNMPQKGEVYNVRTDNILFIFSGAFVGLHK------VIMDRISRGSIGFGQP 422

Query: 241 VENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           V    +      D     +    I  G   E + +  LP    ++      S +++   F
Sbjct: 423 VRGSALTNNRSRDHTPGNNEPIPILPGSEEEALYKKHLPFFTSATSPN---SPDSEPTYF 479

Query: 299 IASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
               A  +  P DL     +PE+ GR PV   L +L       ILT+  ++L+ QY  L 
Sbjct: 480 ---NALDLLNPTDLQNYGFIPELVGRVPVTAALSTLTTPLLVRILTEPRNSLLAQYTTLF 536

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
              GI + FT  ++  +A  A  + +     GAR L+T +E +L D  F       K V+
Sbjct: 537 SLSGIEIRFTTPALHKIAANAFTMGT-----GARALRTELETILSDAMFETPGSSVKFVL 591

Query: 414 IDAEYVRLHIGDF 426
           +       +    
Sbjct: 592 VTESVAERNEKPI 604


>gi|226321917|ref|ZP_03797443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi Bol26]
 gi|226233106|gb|EEH31859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi Bol26]
          Length = 430

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 172 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 204 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 249 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D
Sbjct: 292 FG----LIPEFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E +L+D+ F    + + K VV+  E V
Sbjct: 348 ALESIVDEAILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397


>gi|307128584|ref|YP_003880614.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
 gi|306483046|gb|ADM89916.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia
           muelleri CARI]
          Length = 344

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 183/430 (42%), Gaps = 87/430 (20%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKL +   P++I   LD+Y+IGQ+DAK+ +++A+ N ++R  L   L DE+   N+L++G
Sbjct: 1   MKLNY---PKKIKDFLDQYVIGQEDAKKTISVAVYNHYKRIYL---LNDEIDKSNVLMIG 54

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TG GKT I++ +++    PF   + T  TE GYVG +VE I+  L+  A   +  + + 
Sbjct: 55  DTGTGKTLIAKSISKFLNVPFAIADATSLTEAGYVGEDVESILTKLLQSANYNIALAEKG 114

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V         + I         TS TR+V  + ++   +   E  I     +    + D
Sbjct: 115 IV-------FIDEIDKISRKNENTSITRDVSGEGVQQALLKILEGTIVNVPPNVGRKHPD 167

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                            + M     K I       +  L    S+RL             
Sbjct: 168 -----------------QKMIKLNTKNILFIAGGAFEGLKDIISNRL------------- 197

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                   +           G      ++   ++LL  V                     
Sbjct: 198 -------NISTI--------GFKTKFDKKINDKNLLKFV--------------------- 221

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
               H  +   L+PE+ GR P+  +L SL++   + IL + ++ +I QYK+L   + I L
Sbjct: 222 --GTHDLKKFGLIPELIGRLPIISNLNSLDRESLKRILLEPKNAIIKQYKKLFYMDKINL 279

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT+ +ID + D A+ L      +GAR L+++ + +++D  F+   ++E +++ID   V+
Sbjct: 280 KFTDSAIDLIVDKAIKL-----SLGARGLKSICDNIIKDYMFNIDSIKE-SLIIDKFDVK 333

Query: 421 LHIGDFPSET 430
             + ++  + 
Sbjct: 334 CQLNNWKKKR 343


>gi|332200133|gb|EGJ14206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47368]
          Length = 401

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 285 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVR 420
            V 
Sbjct: 389 TVD 391


>gi|167745380|ref|ZP_02417507.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662]
 gi|167655101|gb|EDR99230.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662]
          Length = 480

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 165/415 (39%), Gaps = 81/415 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L+VGPTG GKT 
Sbjct: 136 PHKIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKTY 195

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G +VE ++  L+  A N V E+    +      
Sbjct: 196 LVKTLARLLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEAEHGII------ 249

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT                  D+        +          V 
Sbjct: 250 -----FIDEIDKIAKKQNTNSR---------------DVSGESVQQGLLKLLEGAEVEVP 289

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     M +   K I       +P+L      RL+   ++          +    
Sbjct: 290 VGATSKNAMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSI---------GFHADL 340

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D+FDK                   ++L  V                            R
Sbjct: 341 KDKFDK-----------------DENILSRVT-----------------------VDDLR 360

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ L+K     IL + ++ ++ QY++L++ + + L F E +++
Sbjct: 361 EYGMIPEFLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKLLELDEVELIFDESALE 420

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           A+A+ A+   +     GAR L+ ++E+ + DI F    D     V+I+ +Y+  H
Sbjct: 421 AIAEKALEKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGRVIINRDYILNH 470


>gi|289168392|ref|YP_003446661.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
 gi|288907959|emb|CBJ22799.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           mitis B6]
          Length = 410

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|15639499|ref|NP_218949.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025738|ref|YP_001933510.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum
           subsp. pallidum SS14]
 gi|6225173|sp|O83521|CLPX_TREPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689324|sp|B2S3A2|CLPX_TREPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3322800|gb|AAC65496.1| ATP-dependent Clp protease subunit X (clpX) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018313|gb|ACD70931.1| ATP-dependent Clp protease subunit X [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059885|gb|ADD72620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 415

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 169/420 (40%), Gaps = 87/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
           +P E+ + LD+Y+IGQ  AKR +++A+ N ++R    +   D   +   N+LL+GPTG G
Sbjct: 63  TPLELKAYLDQYVIGQDLAKRVLSVAVYNHYKRVAGRSLDIDSVLIEKSNVLLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ L++    PF   + T  TE GYVG +VE I+  LV  A   V  + R      
Sbjct: 123 KTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNANGDVALAER------ 176

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             I   + I          S TR+V  + ++   +   E  I          + +     
Sbjct: 177 -GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQ---- 231

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                                      DM  V   +I  +    
Sbjct: 232 -------------------------------------------DMLRVDTSNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS---TKYGSINTDHILFIASG 302
            V LD         +  G G   + V+   L L+    +     K+G             
Sbjct: 249 FVGLDGIVGTRVCKNPVGFGADVKTVKERGLQLMHEDVIPDDLVKFG------------- 295

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PEI GR PV V L +L+K D R IL    + ++ Q++ L   + + L F
Sbjct: 296 ---------LIPEIIGRLPVTVALDALSKEDLRNILVRPRNAIVRQFEALFALDDVRLVF 346

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
            ED++DA+A  A++  +     GAR L++++ER++ D  F A  L+ K  + I  + V  
Sbjct: 347 DEDALDAIAQQAIDQKT-----GARGLRSIVERLMLDAMFEAPSLKGKKELCITKKVVTQ 401


>gi|154483382|ref|ZP_02025830.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC
           27560]
 gi|149735892|gb|EDM51778.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC
           27560]
          Length = 519

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 161/420 (38%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  I  +LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 170 PHVIKGKLDDYVIGQDYAKKVMSVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKTY 229

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++    +      
Sbjct: 230 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAETGII------ 283

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT                  D+        +          V 
Sbjct: 284 -----FIDEIDKIAKKQNTSSR---------------DVSGESVQQGMLKLLEGSEVEVP 323

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL         + Q    +    
Sbjct: 324 VGATSKNAMVPLATVNTKNILFICGGAFPDLEDIIKERL---------NKQAAIGFQSEL 374

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D++D     D      V+ E +                                    R
Sbjct: 375 TDKYD----NDPNVMKKVTSEDL------------------------------------R 394

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L  L +     ILTD ++ +I QY++L++ + + L+FTE ++ 
Sbjct: 395 KFGMIPEFLGRLPIVFTLDGLTEDMLVKILTDPKNAIIKQYQKLLELDEVKLEFTEGALR 454

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
            +A  A+   +     GAR L+ ++E+ + DI +    D    TV I  EY+    G   
Sbjct: 455 TIAKKAIEKKT-----GARALRAIIEKFMLDIMYEIPKDDNIGTVKITEEYINGTGGPVI 509


>gi|307703276|ref|ZP_07640221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
 gi|307623142|gb|EFO02134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           oralis ATCC 35037]
          Length = 401

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 165/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 285 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 389 AVDGTEKPILE 399


>gi|242775288|ref|XP_002478613.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722232|gb|EED21650.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 621

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 114/499 (22%), Positives = 191/499 (38%), Gaps = 106/499 (21%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------------------------- 41
            +PR +   LD+Y++GQ  AK+ +++A+ N ++R                          
Sbjct: 90  LTPRMLKQYLDQYVVGQDRAKKILSVAVYNHYQRIMELQRQEEAAAEAMAQKERREAMEA 149

Query: 42  ----------QLPADLRDELM------------------PKNILLVGPTGVGKTAISRRL 73
                      + + ++D +                     NILL+GP+GVGKT +++ L
Sbjct: 150 HPLDSHQRTIHIGSPMQDMIESRLGRSSSFTDTSMTQLEKSNILLLGPSGVGKTLMAKTL 209

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R     DEV      
Sbjct: 210 ARVLDVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEKAERGIICLDEV------ 263

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNFDIPGG 184
              ++I  A V      +   V +  L+  E +  ++ ++    SS           PG 
Sbjct: 264 ---DKIATARVSHGKDVSGEGVQQALLKIVEGTTIQVQVKPEKNSSRPAGGAPGSFPPGT 320

Query: 185 ASVGILNLSELFSKVMGSG------RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           A     N S   S            R   I       +  L +      I MD + + S+
Sbjct: 321 APGSGFNSSSTASGPPPQKGEVYNVRTDNILFIFSGAFVGLNK------IIMDRISKSSM 374

Query: 239 QMVENYGIVFLDEFDKIVARDSGN------GIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
              +      +   +   ++D+ N        G   E + +  LP    ++  T      
Sbjct: 375 GFGQPVRASSISSGNGSSSQDASNETPIPIAPGSEEEALYKKYLPFFTSATPLTS----Q 430

Query: 293 TDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
            + I F       +S PADL     +PE+ GR PV   L SL+ S    ILT+  ++LI 
Sbjct: 431 EEPIYF---NPLDLSTPADLQKYGFIPELVGRIPVTTALSSLSHSLLLRILTEPRNSLIT 487

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L    GI L FT  ++  +A  A+ + +     GAR L+T +E +L D  F A   
Sbjct: 488 QYETLFDLSGIKLSFTTPALHKIASNALTMGT-----GARALRTELETILSDAMFEAPGS 542

Query: 408 QEKTVVIDAEYVRLHIGDF 426
             K V++            
Sbjct: 543 SVKFVLVTENVADRQEKPI 561


>gi|307127779|ref|YP_003879810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
 gi|306484841|gb|ADM91710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 670-6B]
          Length = 410

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|255505533|ref|ZP_05346675.3| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
 gi|255267439|gb|EET60644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
          Length = 498

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 164/413 (39%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y+IGQ+ AK+ +++ + N ++R         E+   N+L++GPTG GKT 
Sbjct: 149 PHKIKAKLDEYVIGQEYAKKVISVGVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKTY 208

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R  +     I
Sbjct: 209 LVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKAERGII----FI 264

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +  ++I           +   V +  L+  E SD E+          +          + 
Sbjct: 265 DEIDKIAKKQNATQRDVSGESVQQGMLKLLEGSDVEV---------PVGANSKNAMVPLE 315

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
            +N   +                    +P L     +RL    ++   +           
Sbjct: 316 TVNTRNIL-------------FICGGAFPGLEDIIKERLNKQASIGFQA----------- 351

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                    +L  V    +                       R
Sbjct: 352 -DLRDK--------------YDSDPHILEKVTNEDI-----------------------R 373

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   ++ L K     IL + ++ +I QY++L+  + + L+F +D+++
Sbjct: 374 KFGMIPEFIGRLPIVFTMQGLTKEMMVRILKEPKNAIIKQYQKLLALDEVQLEFEDDALE 433

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+A+ A+   +     GAR L+ ++E ++ DI +    D     V I   Y+ 
Sbjct: 434 AIAERALEKKT-----GARALRAIIEEIMLDIMYEIPKDDNIGKVTITRAYIE 481


>gi|298230526|ref|ZP_06964207.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255218|ref|ZP_06978804.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503307|ref|YP_003725247.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298238902|gb|ADI70033.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 410

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELKFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|307704381|ref|ZP_07641296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
 gi|307708344|ref|ZP_07644811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307615790|gb|EFN94996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis NCTC 12261]
 gi|307622066|gb|EFO01088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK597]
          Length = 401

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 285 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVR 420
            V 
Sbjct: 389 AVD 391


>gi|254797098|ref|YP_003081936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           risticii str. Illinois]
 gi|254590291|gb|ACT69653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           risticii str. Illinois]
          Length = 400

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 169/422 (40%), Gaps = 83/422 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGV 64
           F+P++I    D +I  Q+DAK+ +++A+ N ++            E+   NIL++GPTG 
Sbjct: 58  FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGSRSNSKDVEITKSNILIIGPTGC 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT  ++ LAR    PF   + T  TE GYVG +VE I+R L+  A   V  +++  V  
Sbjct: 118 GKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSADYNVEAAQKGIVY- 176

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E  I                 
Sbjct: 177 ------IDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQ----------- 219

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                             GRK   + +VQ                   +   +I  +   
Sbjct: 220 -----------------GGRKHPNQETVQ-------------------IDTTNILFICGG 243

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD    I  R S N +G   E +Q   +       V  +      D + F      
Sbjct: 244 AFVGLDNI--IANRRSINTMGFKSE-LQSKEVSPTILKKVEPE------DLVKF------ 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR PV   L  L + +   IL+  ++ L+ QY  L   + I L F++
Sbjct: 289 ------GMIPEFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSD 342

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++  +A  A+        +GAR L+ +ME VL +  F     ++ KT++I  + VR  +
Sbjct: 343 EALKTVARAAIKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEM 397

Query: 424 GD 425
            +
Sbjct: 398 AN 399


>gi|293365855|ref|ZP_06612560.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315613540|ref|ZP_07888447.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331265985|ref|YP_004325615.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
 gi|291315679|gb|EFE56127.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           oralis ATCC 35037]
 gi|315314231|gb|EFU62276.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326682657|emb|CBZ00274.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           oralis Uo5]
          Length = 410

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 165/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTEKPILE 408


>gi|225027522|ref|ZP_03716714.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353]
 gi|224955161|gb|EEG36370.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353]
          Length = 538

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 169/421 (40%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 175 PHQIKAQLDEYVIGQDYAKKVMSVAVYNHYKRVITNTMDEIEIDKSNMLMIGPTGSGKTH 234

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G +VE ++  L+  A N V ++    +     I
Sbjct: 235 LVKTLARLLNVPLAICDATSLTEAGYIGDDVESVLSKLLANADNDVEKAETGII----FI 290

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +  ++I       +   +   V +  L+  E S+ E+          +            
Sbjct: 291 DEIDKIAKKKNTTSRDVSGESVQQALLKLLEGSEVEV---------PVGASSKNAMVPTA 341

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           ++N   +                    +P L     +R+    ++          +    
Sbjct: 342 VMNTRNIL-------------FICGGAFPGLEDIIKERMTQHSSI---------GFHAEL 379

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D++D                  ++++L  V    +  K+G I                 
Sbjct: 380 KDKYDH-----------------EKNMLQYVTVEDIR-KFGMI----------------- 404

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR P+   L +L K     IL + ++ ++ QY++L+  + + L F + ++ 
Sbjct: 405 -----PEFIGRLPIIFTLNALTKEMLVDILKEPKNAILKQYQKLLALDEVDLQFEDGALT 459

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A+ A+       D GAR L+ ++E+ + DI +    D     V I  +Y+R +     
Sbjct: 460 AIAEKAME-----KDTGARALRAIIEKFMLDIMYEIPKDDNIGRVTITEDYIRNNGAPLI 514

Query: 428 S 428
            
Sbjct: 515 E 515


>gi|306829878|ref|ZP_07463065.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
 gi|304427889|gb|EFM30982.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis
           ATCC 6249]
          Length = 410

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|218189491|gb|EEC71918.1| hypothetical protein OsI_04712 [Oryza sativa Indica Group]
          Length = 630

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 94/441 (21%), Positives = 166/441 (37%), Gaps = 98/441 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAV---------AIALRNRWRRQQL--------------- 43
           +PRE+   LD ++IGQ  AK+ +         ++A+ N ++R                  
Sbjct: 204 TPREMCRRLDEFVIGQGKAKKVLEGACHNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLD 263

Query: 44  ---PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE
Sbjct: 264 AASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVE 323

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            I++ L+  A   V+ +++  V                                      
Sbjct: 324 SILQKLLVAAEYNVQAAQQGIV-------------------------------------- 345

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              E+D ++   +  ++      G  V    L  L   V+    K   + S  +      
Sbjct: 346 YIDEVD-KITKKAESVNVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQIDT 404

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           +D                 ++   G  F+D    I  R   + IG             V 
Sbjct: 405 KD-----------------ILFICGGAFVDLEKTISERRQDSSIGFGAPIRTNMRSSEVT 447

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
              V++          L              L+PE  GR P+ V L +LN+     +LT+
Sbjct: 448 DPMVTSSLLESVESGDL----------ARYGLIPEFIGRLPILVSLTALNEDQLVQVLTE 497

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++L  QY+++     + L FT+ ++  +A  A+  N+     GAR L+ ++E +L + 
Sbjct: 498 PKNSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNT-----GARGLRAILESLLLEA 552

Query: 401 SFSASDLQEKTVVIDAEYVRL 421
            +   D +  +  +DA  V  
Sbjct: 553 MYEIPDEKTGSERVDAVVVDE 573


>gi|327389757|gb|EGE88102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA04375]
          Length = 401

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 285 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELKFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVR 420
            V 
Sbjct: 389 TVD 391


>gi|169834164|ref|YP_001694974.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996666|gb|ACA37278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 402

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 50  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 109

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 110 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 169

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 170 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 217

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 218 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 259

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 260 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 285

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 286 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 334

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 335 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 389

Query: 418 YVR 420
            V 
Sbjct: 390 AVD 392


>gi|182684524|ref|YP_001836271.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221232330|ref|YP_002511483.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
 gi|238691178|sp|B2IR87|CLPX_STRPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763866|sp|B8ZLT1|CLPX_STRPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182629858|gb|ACB90806.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|220674791|emb|CAR69364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae ATCC 700669]
          Length = 410

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|225861402|ref|YP_002742911.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|225727587|gb|ACO23438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 402

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 50  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 109

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 110 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 169

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 170 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 217

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 218 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 259

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 260 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 285

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 286 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 334

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 335 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 389

Query: 418 YVR 420
            V 
Sbjct: 390 AVD 392


>gi|332072416|gb|EGI82899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17570]
 gi|332072739|gb|EGI83220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA17545]
          Length = 401

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 284

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 285 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVR 420
            V 
Sbjct: 389 TVD 391


>gi|88608107|ref|YP_506628.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|123491542|sp|Q2GD18|CLPX_NEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88600276|gb|ABD45744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia
           sennetsu str. Miyayama]
          Length = 400

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/422 (22%), Positives = 165/422 (39%), Gaps = 83/422 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGV 64
           F+P++I    D +I  Q+DAK+ +++A+ N ++            E+   NIL++GPTG 
Sbjct: 58  FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGNRLNSKDVEITKSNILIIGPTGC 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT  ++ LAR    PF   + T  TE GYVG +VE I+R L+  A   V  +++  V  
Sbjct: 118 GKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSADYNVEAAQKGIVY- 176

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E  I                 
Sbjct: 177 ------IDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGG--------- 221

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +   Q+                  +   +I  +   
Sbjct: 222 -----------------------RKHPNQETI---------------QIDTTNILFICGG 243

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD    I  R S N +G   E +Q   +       V  +      D + F      
Sbjct: 244 AFVGLDNI--IANRQSINTMGFKSE-LQSKEVSPTILKKVEPE------DLVKF------ 288

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR PV   L  L + +   IL+  ++ L+ QY  L   + I L F++
Sbjct: 289 ------GMIPEFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSD 342

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++  +A  A+        +GAR L+ +ME VL +  F     ++ KT++I  + VR  +
Sbjct: 343 EALKTVARAAIKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEM 397

Query: 424 GD 425
            +
Sbjct: 398 AN 399


>gi|86608810|ref|YP_477572.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502535|sp|Q2JLU2|CLPX_SYNJB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86557352|gb|ABD02309.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 448

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 95/430 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---------LRDELMPKNILL 58
            P+EI+  LD+Y+IGQ+ AK+ +++A+ N ++R    A+            EL   NIL+
Sbjct: 81  KPQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILI 140

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 141 IGPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQ 200

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    + +                
Sbjct: 201 RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQ 260

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            D SN     G                               +  L +      +    +
Sbjct: 261 IDTSNILFICGG-----------------------------AFVGLEK------VIEQRI 285

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            + S+  ++                  G  + VSRE    + L  +E   +  KYG I  
Sbjct: 286 GKKSMGFIKP-----------------GEQLSVSREQRMANALKALEPEDL-IKYGMI-- 325

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                               PE  GR PV   L  L++     ILT  ++ ++ Q ++L+
Sbjct: 326 --------------------PEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLL 365

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + +G+ L+F   +I A+A  A    +     GAR L+ ++E ++ D+ + A   ++ K +
Sbjct: 366 RMDGVELEFEPAAIAAIAKEAYRRKT-----GARALRAIVEELMLDVMYEAPSRRDLKYI 420

Query: 413 VIDAEYVRLH 422
            I AE V   
Sbjct: 421 RITAEMVERR 430


>gi|183603154|ref|ZP_02712907.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
 gi|183572734|gb|EDT93262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP195]
          Length = 402

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 50  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 109

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 110 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 169

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 170 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 217

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 218 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 259

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 260 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 285

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 286 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 334

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 335 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 389

Query: 418 YVR 420
            V 
Sbjct: 390 TVD 392


>gi|15901412|ref|NP_346016.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15903470|ref|NP_359020.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae R6]
 gi|116517127|ref|YP_816859.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae D39]
 gi|148984921|ref|ZP_01818174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|148997363|ref|ZP_01824968.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149007515|ref|ZP_01831150.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149007878|ref|ZP_01831465.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012698|ref|ZP_01833674.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149022039|ref|ZP_01836001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483552|ref|ZP_02708504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486832|ref|ZP_02711340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491537|ref|ZP_02715680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493474|ref|ZP_02717617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|168575233|ref|ZP_02721196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225855011|ref|YP_002736523.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225857195|ref|YP_002738706.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|225859326|ref|YP_002740836.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|237650252|ref|ZP_04524504.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974]
 gi|237820865|ref|ZP_04596710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303260196|ref|ZP_07346168.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262587|ref|ZP_07348528.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264989|ref|ZP_07350904.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|303266452|ref|ZP_07352340.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|303269034|ref|ZP_07354816.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|307068212|ref|YP_003877178.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|54036857|sp|P63792|CLPX_STRR6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040895|sp|P63791|CLPX_STRPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122278295|sp|Q04JH9|CLPX_STRP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763865|sp|C1C8G0|CLPX_STRP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763868|sp|C1CFF2|CLPX_STRZJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763869|sp|C1CLR8|CLPX_STRZP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|14973060|gb|AAK75656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae TIGR4]
 gi|15459081|gb|AAL00231.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Streptococcus pneumoniae R6]
 gi|116077703|gb|ABJ55423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae D39]
 gi|147756418|gb|EDK63459.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760605|gb|EDK67579.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147760874|gb|EDK67844.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763298|gb|EDK70236.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922943|gb|EDK74059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP3-BS71]
 gi|147929883|gb|EDK80872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043151|gb|EDT51197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570188|gb|EDT90716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574196|gb|EDT94724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576310|gb|EDT96838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae CDC3059-06]
 gi|183578742|gb|EDT99270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae MLV-016]
 gi|225722023|gb|ACO17877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae 70585]
 gi|225723578|gb|ACO19431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae JJA]
 gi|225725234|gb|ACO21086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae P1031]
 gi|301794578|emb|CBW37022.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV104]
 gi|301800400|emb|CBW33031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae OXC141]
 gi|301802287|emb|CBW35039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae INV200]
 gi|302636304|gb|EFL66798.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638693|gb|EFL69156.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302641424|gb|EFL71789.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|302644030|gb|EFL74289.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|302645508|gb|EFL75740.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|306409749|gb|ADM85176.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus
           pneumoniae AP200]
 gi|332199613|gb|EGJ13688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41317]
 gi|332201010|gb|EGJ15081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA47901]
          Length = 410

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|322377849|ref|ZP_08052338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
 gi|321281272|gb|EFX58283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M334]
          Length = 410

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERTE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|306824842|ref|ZP_07458186.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433053|gb|EFM36025.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 410

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTADDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 AVD 400


>gi|226321181|ref|ZP_03796720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 29805]
 gi|226233414|gb|EEH32156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 29805]
 gi|312149757|gb|ADQ29828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi N40]
          Length = 430

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 172 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 204 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 249 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D
Sbjct: 292 FG----LIPEFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E + +D+ F    + + K VV+  E V
Sbjct: 348 ALESIVDEAILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397


>gi|303255354|ref|ZP_07341424.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
 gi|302597722|gb|EFL64798.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae BS455]
          Length = 410

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 163/418 (38%), Gaps = 85/418 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTG 63
            P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL++GPTG
Sbjct: 63  KPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + R  + 
Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIY 182

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I          S TR+V  + ++   +    I+  VA             
Sbjct: 183 V-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ-------- 225

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                     +   + M     K I   V   +  +      RL          I   +N
Sbjct: 226 -------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVIGFGQN 272

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
                +DE       +S     +  E +Q+                              
Sbjct: 273 NKA--IDE-------NSSYMQEIIAEDIQK------------------------------ 293

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F 
Sbjct: 294 ------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFD 347

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
           ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E V 
Sbjct: 348 DEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD 400


>gi|148988623|ref|ZP_01820056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925824|gb|EDK76899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae SP6-BS73]
          Length = 410

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 166/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
           +  +N     +DE       +S     +  E +Q+                         
Sbjct: 268 EFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 293

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 294 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|325970909|ref|YP_004247100.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta
           sp. Buddy]
 gi|324026147|gb|ADY12906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta
           sp. Buddy]
          Length = 409

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 170/418 (40%), Gaps = 82/418 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P+E+   +D Y+IGQ DAKR +A+A+ N ++R +    + +   EL   NIL+VGPTG 
Sbjct: 60  TPKELKDYMDEYVIGQDDAKRVLAVAVYNHYKRVKFQKQIAEQGVELDKSNILMVGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++  LA+    PF   + T  TE GYVG +VE I+  L+  A + ++         
Sbjct: 120 GKTLLASTLAKKLQVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNIK--------- 170

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE  I+                            EID ++A    + S      G
Sbjct: 171 ----AAEYGII-------------------------FIDEID-KIAKKGENPSITRDVSG 200

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +         +   +   Q+               M  ++  +I  +   
Sbjct: 201 EGVQQALLKIIEGTDASVPPQGGRKHPNQE---------------MLKINTRNILFICGG 245

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V LD+   I  R S + +G     +                    + D     +    
Sbjct: 246 AFVGLDKV--IEKRVSSHAMGFGASIINAQ-----------------DKDLHALYSKMMP 286

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+ V L +L+K D   I+ + +++++ QY+   + +GI   F  
Sbjct: 287 DDLIKFGLIPEFIGRLPIHVALDNLSKKDLMRIIVEPKNSILRQYEAAFRLDGIEFIFKS 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
           ++++A+A+ A    +     GAR L++++E ++  I +    + Q K V++  E V  
Sbjct: 347 EAVEAVAEKAFEQKT-----GARGLRSIVENIMMGIMYDIPSIQQVKQVIVGRECVLE 399


>gi|225551973|ref|ZP_03772913.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp.
           SV1]
 gi|225370971|gb|EEH00401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp.
           SV1]
          Length = 430

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/421 (23%), Positives = 175/421 (41%), Gaps = 83/421 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K     +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLV
Sbjct: 57  KSNDLPTPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLV 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V     
Sbjct: 117 GPTGSGKTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----- 171

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE+ I+                            EID ++A  + ++S  
Sbjct: 172 --------SLAEKGII-------------------------YIDEID-KIAKKNENVSIT 197

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  +   V     +   +   +                   ++  +I 
Sbjct: 198 RDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNIL 242

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +     V L+   K   R + + IG S               ++  K    +T      
Sbjct: 243 FICGGAFVGLENIVK--NRINKSSIGFS---------------AIEKKNIREDTSLKYLE 285

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + 
Sbjct: 286 MEDLIKFG----LIPEFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVE 341

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L F +D+++++ D A+  N+     GAR L++++E +L+D+ F    + + K V++  E 
Sbjct: 342 LVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKES 396

Query: 419 V 419
           V
Sbjct: 397 V 397


>gi|289178844|gb|ADC86090.1| ClpX [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 460

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 178/439 (40%), Gaps = 103/439 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------------- 45
            P +I   LD+Y+IGQ DAKR +++A+ N ++R Q+                        
Sbjct: 82  KPSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSIL 141

Query: 46  DLRDELM--PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           D  DE+     NILL+GPTGVGKT +++ LA+    PFI V+ T  TE GYVG +VE ++
Sbjct: 142 DPLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVL 201

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             L+  A   V  +R   V                                         
Sbjct: 202 SRLLQAADGDVDRARHGIV--------------------------------------YID 223

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E+D ++A  S D ++             L ++    +       + + V   +       
Sbjct: 224 EVD-KIARKSGDNTSMTRDVSGEGVQQALLKILEGTL-------VHVPVDGAHR------ 269

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
             +  +   +    I  +     V LDE   +  R   +  G    G    + P+ E   
Sbjct: 270 -HKDGETVELDTSDILFICGGAFVGLDEI--VSRRLGRHESGF---GASWRVNPIDEHEI 323

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
               Y  +N D +               LLPE  GR PV   L  L   D + +LT   +
Sbjct: 324 ----YRQVNADDLAEF-----------GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTN 368

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY++L   +G+ L FT+ +++A+A  A+        +GAR L++++E +LE+  F 
Sbjct: 369 ALLKQYQKLFSVDGVTLTFTDAAVEAIASTALERG-----VGARGLRSIIESILEETMFE 423

Query: 404 ASDLQEKT-VVIDAEYVRL 421
             ++ + T VV++A+ V  
Sbjct: 424 LPNMDDVTEVVVNADCVTE 442


>gi|224532429|ref|ZP_03673056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi WI91-23]
 gi|224512639|gb|EEF83013.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi WI91-23]
          Length = 430

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 173/415 (41%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V           
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDV----------- 171

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A  + ++S      G 
Sbjct: 172 --SLAEKGII-------------------------YIDEID-KIAKKNENVSITRDVSGE 203

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     +   +   +                   ++  +I  +    
Sbjct: 204 GVQQALLKIIEGTVANVPPRGGRKHPYEDTI---------------EINTQNILFICGGA 248

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V L+   K   R + + IG                S++  K    +T            
Sbjct: 249 FVGLENIVK--NRINKSSIGF---------------SAIEKKNIREDTSLKYLEMEDLIK 291

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D
Sbjct: 292 FG----LIPEFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++++ D A+  N+     GAR L++++E + +D+ F    + + K VV+  E V
Sbjct: 348 ALESIVDEAILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397


>gi|331092463|ref|ZP_08341287.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401203|gb|EGG80795.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 467

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 165/421 (39%), Gaps = 81/421 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD YI+GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 116 PHKIKASLDEYIVGQEHAKKAMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGCGKTY 175

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ +  +      
Sbjct: 176 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQGII------ 229

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 230 -----FIDEIDKIAKKKNTNQR---------------DVSGESVQQGMLKLLEGSDVEVP 269

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL    +V   +           
Sbjct: 270 VGANSKNAMVPLTTVNTKNILFICGGAFPDLEEIIKERLNKQASVGFMA----------- 318

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   +   L+E   V                       R
Sbjct: 319 -DLKDK-----------------YNNDKNLLEKVEV--------------------EDLR 340

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR PV   L+ L++     IL + ++ ++ QY++L+  + + L+F E+++ 
Sbjct: 341 NFGMIPEFIGRLPVIFTLQGLDRDKLVKILKEPKNAILKQYQKLLALDEVKLEFDEEALG 400

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A+ A+       D GAR L+ ++E  + DI +    D     V I   Y+    G   
Sbjct: 401 AIAEKAMK-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGQVTITKAYIEGTGGPVI 455

Query: 428 S 428
           +
Sbjct: 456 T 456


>gi|332073906|gb|EGI84384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae GA41301]
          Length = 410

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKII 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q              K+G I       
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQ--------------KFGII------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|313675246|ref|YP_004053242.1| ATP-dependent clp protease ATP-binding subunit clpx [Marivirga
           tractuosa DSM 4126]
 gi|312941944|gb|ADR21134.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marivirga
           tractuosa DSM 4126]
          Length = 412

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 172/419 (41%), Gaps = 80/419 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGKT 67
           P E+ + LD+Y++GQ +AK+ +++A+ N ++R    +   D  +   NI++VG TG GKT
Sbjct: 63  PIEMKTHLDQYVVGQDEAKKVMSVAVYNHYKRLMQKSTKDDVTIEKSNIIMVGETGTGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  V     
Sbjct: 123 YLAKTLARILQVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAQRGIV----- 177

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                                               EID ++A  S + S      G  V
Sbjct: 178 ---------------------------------YIDEID-KIARKSDNPSITRDVSGEGV 203

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L  L    +    +   +                ++I++DT         EN   +
Sbjct: 204 QQAMLKLLEGTSVNVPPQGGRKHP------------DQKMINVDT---------ENILFI 242

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
               FD I +R   + +  +  G  +      E          I+ +++L          
Sbjct: 243 CGGAFDGI-SRSIASRLNTTPLGFAKADTKEEE----------IDKENLL--QYITAQDL 289

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   L+PE+ GR PV  HL  L+K   +LILT+ ++ L+ QY +L   EGI L   + ++
Sbjct: 290 KNFGLIPELIGRLPVLTHLDPLSKDTLKLILTEPKNALVKQYNKLFDMEGINLVIEDSAL 349

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGD 425
           D +   AV        +GAR L+++ E ++ D  F    +     ++ID +Y       
Sbjct: 350 DYIVQKAVEFK-----LGARGLRSICEVIMTDAMFEFDGESSGTELIIDEKYAASKFEK 403


>gi|153855783|ref|ZP_01996784.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814]
 gi|149751910|gb|EDM61841.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814]
          Length = 483

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 171/420 (40%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y++GQ+ AK+ +++A+ N ++R    +    E+   N+L++GPTG GKT 
Sbjct: 133 PHKIKAKLDEYVVGQEYAKKVMSVAVYNHYKRVATDSMDDIEIEKSNMLMIGPTGSGKTY 192

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA++   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ  I
Sbjct: 193 LVKTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGII 246

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             +E  +D +  K  +S                    D+        +          V 
Sbjct: 247 FIDE--IDKIAKKKNSSQR------------------DVSGESVQQGMLKLLEGSDVEVP 286

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   + I       +P+L     +RL     +   +           
Sbjct: 287 VGATSKNAMVPLTTVNTRNILFICGGAFPDLNGIIKERLTKQAAIGFGA----------- 335

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   +   +++          + T+ +           R
Sbjct: 336 -DLRDK-----------------YNNDKEILK---------KVTTEDL-----------R 357

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ +++     IL + ++ ++ QY++L+  + + L+F +D++ 
Sbjct: 358 AFGMIPEFLGRLPIVFTLQGMSEEMLVEILKEPKNAILKQYQKLLALDEVKLEFNDDALH 417

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+       D GAR L+ ++E  + DI +    D     V+I  EY+    G   
Sbjct: 418 AIAKKALK-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVIITKEYIEGTGGPVI 472


>gi|317495277|ref|ZP_07953647.1| ATP-dependent Clp protease [Gemella moribillum M424]
 gi|316914699|gb|EFV36175.1| ATP-dependent Clp protease [Gemella moribillum M424]
          Length = 403

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 170/418 (40%), Gaps = 83/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P+EI+  L+ Y+I Q  AK++VA+A+ N ++R     +    EL   NI L+G TG G
Sbjct: 61  LKPQEIMDYLNEYVISQDKAKKSVAVAVYNHYKRIMAKQNDETIELQKSNIALIGSTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +           
Sbjct: 121 KTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNANYDI----------- 169

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID ++A    ++S      G 
Sbjct: 170 --ERAEKGII-------------------------YIDEID-KIAKKGENVSITRDVSGE 201

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   +     +   +   ++               M  ++   I  +    
Sbjct: 202 GVQQALLKILEGTIASVPPQGGRKHPGEE---------------MIKINTKDILFIIGGA 246

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              ++E   I  R     IG S+     D   ++           +  + ++        
Sbjct: 247 FSGIEEI--IKRRLGDKIIGFSKSDELNDDSDIIS---------KVKHEDLVKF------ 289

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GR PV  HL+ L++ D   +LT+ +++++ QY+ L K +G+ L F +D
Sbjct: 290 -----GIIPEFIGRIPVICHLEELDEQDLVRVLTEPKNSVVKQYEYLFKLDGVNLVFEKD 344

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +++ +A  ++   +     GAR L++++E  L D+ F     +  KT  I  + +   
Sbjct: 345 ALEEVARESIKRKT-----GARGLRSIIEEALLDVMFELPSTKGVKTCTITKDNIVNK 397


>gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 412

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/417 (23%), Positives = 175/417 (41%), Gaps = 78/417 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P E+   LD Y+IGQ+ AK+ +++A+ N ++R +      D EL   N+LL+GPTG GK
Sbjct: 58  KPGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDDVELQKSNVLLIGPTGAGK 117

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +R++ +  +    
Sbjct: 118 TLLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQNASFDIRKAEKGIIY--- 174

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I         +N    GG  
Sbjct: 175 ----IDEIDKISRKSDTPSITRDVSGEGVQQALLKILEGTI---------ANISPQGG-- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                     + +  D+  ++   G 
Sbjct: 220 ---------------------RKHP-----------------QQEYLKIDTTNILFICGG 241

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F D  +KI+ +             ++ L  + +GS+    + +++       +      
Sbjct: 242 AF-DGLEKIIEKRLS----------KKTLGFITDGSNNRNDFKNMDYTLSRVESEDLIKF 290

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV   L  L+ SD   ILT+ ++ LI QY+++ + E + L F  ++
Sbjct: 291 ----GLIPEFIGRVPVISALNHLSTSDLVHILTEPKNALIKQYQKMFQFENVELKFEREA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLH 422
           ++ +A+ A+   S     GAR L++++E +L D  F   D       ++ AE V   
Sbjct: 347 LEKIAEEALKRGS-----GARGLRSIIENILLDAMFDIPDNTSVVKSIVMAETVTRR 398


>gi|94986251|ref|YP_605615.1| ATP-dependent protease ATP-binding subunit [Deinococcus
           geothermalis DSM 11300]
 gi|167009012|sp|Q1IWD8|CLPX_DEIGD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|94556532|gb|ABF46446.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus
           geothermalis DSM 11300]
          Length = 406

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 168/417 (40%), Gaps = 86/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+EI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPTG GKT
Sbjct: 65  SPKEIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP---DVNLQKSNILLIGPTGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A   V  + R  +     
Sbjct: 122 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAAEYDVAAAERGIIY---- 177

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I         TS TR+V  + ++   +    I+  VA                 
Sbjct: 178 ---IDEIDKIARKSEGTSITRDVSGEGVQQALLKI--IEGTVAQVPPQGG---------- 222

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V+  +I  +      
Sbjct: 223 --------------------RKHPQQELV---------------QVNTKNILFIVGGAFE 247

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            + E  +        G G   +G +++ L  +    V  K+G                  
Sbjct: 248 NMAEIARARTNVRSVGFGAEHKGEEKEELRFLPEDLV--KFG------------------ 287

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR P+ V L+ L++     ILT+ +  ++ QY+ L   +G+ L FTE+++
Sbjct: 288 ----LIPEFVGRLPLVVQLQDLDEDALVRILTEPQGAIVKQYQALFGFQGVDLTFTEEAL 343

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
             +A  A    +     GAR L+ V+E+ + D+ F       K +  DAE +   + 
Sbjct: 344 REVAHRAKARKT-----GARGLRAVLEKAMTDLLFELPIEGLKELRFDAENIDHPLA 395


>gi|161833701|ref|YP_001597897.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Sulcia
           muelleri GWSS]
 gi|152206191|gb|ABS30501.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus Sulcia
           muelleri GWSS]
          Length = 343

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/421 (24%), Positives = 182/421 (43%), Gaps = 83/421 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K   + SPREI   LD+Y+IGQ+DAK+ +++A+ N ++R       + E+   NIL++G 
Sbjct: 4   KFNNSSSPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGD 63

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT I++ +++    PF  V+ T  TE GYVG +VE I+  L+  A   +       
Sbjct: 64  TGTGKTLIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSANYNI------- 116

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                   AE+ I+                            EID +++  + + S    
Sbjct: 117 ------ALAEKGIV-------------------------FIDEID-KISRKNDNPSITRD 144

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L   ++        +                +LI    ++  +I  +
Sbjct: 145 VSGEGVQQALLKILEGSIVNVPPNVGRKHP------------EQKLI---KLNTKNILFI 189

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                  L     I  R + + IG  +                     +++ D    +  
Sbjct: 190 AGGAFEGLKNI--ISNRLNLSSIGFKK---------------------NVSIDGKDLLNF 226

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            + H  +   L+PE+ GR P+  +L SL +   + IL +  +++I QYKEL   + I L 
Sbjct: 227 VSSHDLKKFGLIPELIGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLK 286

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  +ID + D A+ L      +GAR L+T+ E++++D  F+  DL +++++ID   ++L
Sbjct: 287 FTYSAIDLIVDKAIKL-----SLGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 340

Query: 422 H 422
            
Sbjct: 341 K 341


>gi|328707305|ref|XP_003243358.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like isoform 2 [Acyrthosiphon
           pisum]
 gi|328707307|ref|XP_001949996.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like isoform 1 [Acyrthosiphon
           pisum]
          Length = 556

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 168/474 (35%), Gaps = 122/474 (25%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------------ 44
           P+EI   L++Y+IGQ+ AK+ +A+A+ N  +R                            
Sbjct: 124 PKEIFVNLNKYVIGQELAKKVLAVAVYNHCKRIIHNITTPKKNDVIDQRLLDNLQNSREN 183

Query: 45  ---------------ADLRDELM-----------PKNILLVGPTGVGKTAISRRLARLAG 78
                           + +DE+              NI+L+GPTG GKT +++ +A+   
Sbjct: 184 LSNNHIFGMPQMDSTKNNQDEIKITSIFEDTLLEKSNIILLGPTGCGKTLLAQTIAKQLD 243

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF   + T  T+ GYVG ++E +I  L+  A   V                        
Sbjct: 244 VPFAICDCTNLTQAGYVGEDIESVIGKLLQAANYDV------------------------ 279

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE-LFS 197
                         +K + G I   EID   A             G   G+L + E    
Sbjct: 280 --------------EKAQTGIIFLDEIDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVV 325

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
            V     +K    +VQ                   V   +I  V +     LD    I  
Sbjct: 326 NVPEKNTRKLRNETVQ-------------------VDTTNILFVASGAFTGLDRL--ISR 364

Query: 258 RDSGNGIGVSREGVQR-------DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           R + N +G   E                V  ++  T     N +    +           
Sbjct: 365 RTNQNSLGFGAEINNEMGSSRAAAEADRVASTTSYTDIEKENAERDGLLKKVEPRDLIQF 424

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRFPV V   SLN++    ILT+ +++ + Q+K L   + + L FT++++ A+
Sbjct: 425 GMIPEFVGRFPVLVPFHSLNRNLLVRILTEPKNSTVKQFKLLFGLDKVELTFTDEALRAI 484

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           A  A+   +     GAR L+ ++E +L D  F        +V +  + V   + 
Sbjct: 485 ASQALEKKT-----GARGLRAIVESILLDPMFEIPGSDVVSVHVTEDAVNGKMN 533


>gi|225164863|ref|ZP_03727085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae
           bacterium TAV2]
 gi|224800532|gb|EEG18906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae
           bacterium TAV2]
          Length = 490

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/461 (22%), Positives = 166/461 (36%), Gaps = 126/461 (27%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------------------- 47
           P EI + LD ++IGQ  AK+ +++A+ N ++R +  A                       
Sbjct: 63  PSEIKAALDDHVIGQDHAKKVLSVAVYNHYKRLRSAALSNPASASGKAGDARGRHAASGS 122

Query: 48  ----------------------------RDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
                                         E+   NILL GPTG GKT ++R LAR+   
Sbjct: 123 TAPASAAQSAATRGPLTDGIATPPLEFAEVEIEKSNILLAGPTGSGKTLLARTLARVLDV 182

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
           PF   + T  TE GYVG +VE ++  L+  A   VR++    V         + I     
Sbjct: 183 PFAIADATTLTEAGYVGEDVENVVLRLLQAAGGDVRKAECGIVY-------IDEIDKIGR 235

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
                S TR+V  + ++   +   E  I          N    GG               
Sbjct: 236 KTDNVSITRDVSGEGVQQALLKILEGTI---------CNVPPNGG--------------- 271

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD 259
                    +   Q+                  +   +I  +     V LD    I  R 
Sbjct: 272 --------RKHPNQE---------------YVRIDTSNILFICGGAFVGLDSI--IQRRL 306

Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
               +G    GV  D    +    +      ++      I  G         ++PE  GR
Sbjct: 307 GQRSLGF-GNGVAFDPRKPMTAEEIMDGLAPVD-----LIRFG---------MIPEFIGR 351

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L  +D   +L  T+++L+ QY +L   +G+ L  T D++ A+A  AV L +
Sbjct: 352 LPVVSVLDPLTVADLEKVLLRTKNSLVKQYGKLFSMDGVRLRITNDALRAIAQKAVELKT 411

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
                GAR L+ ++E ++ +I +      +   VVIDA  V
Sbjct: 412 -----GARALRAILENIMLEIMYELPQRADVDEVVIDASVV 447


>gi|225678960|gb|EEH17244.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb03]
          Length = 518

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 174/472 (36%), Gaps = 78/472 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDE--------- 50
           +   LD++++GQ  AK+ +++A+ N ++R Q            +    R E         
Sbjct: 2   LKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARPEFPGQQRTIH 61

Query: 51  ----------------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88
                                 L   NILL+GP+GVGKT +++ LAR+   PF   + T 
Sbjct: 62  THAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDCTP 121

Query: 89  FTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTA 143
            T+ GY+G + +  +  L+  A   V ++ R     DEV         ++I  A V    
Sbjct: 122 LTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV---------DKIATAKVSHGK 172

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
             +   V +  L+  E +  +I  +    +                   S   S      
Sbjct: 173 DVSGEGVQQALLKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSSSFGGSSFSSPAPPGS 232

Query: 204 RKKKIRMSVQKCYPELMRDES---DRLIDMDTVHRDSIQMVEN-----YGIVFLDEFDKI 255
             K    +V+      +   +      + MD + R SI   +            +     
Sbjct: 233 SGKAEVYNVRTDNILFIFSGAFVGLNKVIMDRISRGSIGFGQPVRALTSSFSSHNPSQGA 292

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL--- 312
            +       G + E + +  LP    + + +  GS + +   F       +  P DL   
Sbjct: 293 SSPPIPILPGSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF---NPLDLLTPPDLQTY 349

Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
             +PE+ GR P+   L  L       ILT+  ++L+ QY  L    GI L FT  ++  +
Sbjct: 350 GFIPELVGRIPITTALSQLTHRLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKI 409

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           A  A+++ +     GAR L+T ME +L D  F A     K V++        
Sbjct: 410 ASNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLVTEAVASRK 456


>gi|237803135|ref|YP_002888329.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis B/Jali20/OT]
 gi|231274369|emb|CAX11164.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 419

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 168/418 (40%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R +    D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGII--- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  T++++S      G 
Sbjct: 184 -----------------------------------YIDEID-KIGRTTANVSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     K   +   Q+                   + ++I  +    
Sbjct: 208 GVQQALLKIIEGTVANIPPKGGRKHPSQEYIRV---------------NTENILFIVGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   I  R     IG S E            +  +  +     +    IA G   
Sbjct: 253 FVNLDKI--IAKRLGRTTIGFSEETDL---------AVTNRDHLLAKVETEDLIAFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++
Sbjct: 299 ------MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKE 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ A+A  A    +     GAR L  ++E +L D+ F    D   + + I+ + +  +
Sbjct: 353 ALYAIAQKAKQAKT-----GARALGMILENLLRDLMFEIPSDPTVEAIRIEEDTITQN 405


>gi|153813203|ref|ZP_01965871.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174]
 gi|149830734|gb|EDM85825.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174]
          Length = 476

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 159/413 (38%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ+ AK+ +++A+ N ++R          +   N+L++GPTG GKT 
Sbjct: 123 PHKIKATLDEYVIGQEYAKKVMSVAVYNHYKRVATDTMDEIAIEKSNMLMIGPTGCGKTY 182

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V ++    +      
Sbjct: 183 LVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEHGII------ 236

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 237 -----FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGMLKLLEGADVEVP 276

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           I   S+     + +   + I       +P+L     +RL    ++              +
Sbjct: 277 IGANSKNAMVPLTTVNTRNILFICGGAFPDLENIIKERLNKQASI------------GFY 324

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
            D  DK                   D   ++E  +V                       R
Sbjct: 325 ADLKDK-----------------YDDDPHILEKVTV--------------------EDLR 347

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   +  L +     IL++  + ++ QY++L+  + + L+F E ++ 
Sbjct: 348 SFGMIPEFIGRLPIIFTMNGLTEDMMVQILSEPRNAILKQYQKLLALDEVKLEFEEGALH 407

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+A  A+  ++     GAR L+ ++E  + DI +    D     V I  EY+ 
Sbjct: 408 AIAAKAMEKHT-----GARALRAILEEYMLDIMYEIPKDDNIGQVTITREYIE 455


>gi|291402836|ref|XP_002718045.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1
           [Oryctolagus cuniculus]
          Length = 619

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 170/478 (35%), Gaps = 133/478 (27%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWR----------RQQLPADLRDELMPK------- 54
           I + LD+Y++GQ  AK+ +++A+ N ++          RQQ  A+ +  L P+       
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 231

Query: 55  ------------------------------------------NILLVGPTGVGKTAISRR 72
                                                     NILL+GPTG GKT +++ 
Sbjct: 232 ISPHGNALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKSNILLLGPTGSGKTLLAQT 291

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           LA+    PF   + T  T+ GYVG ++E +I  L+  A   V ++++  V          
Sbjct: 292 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEKAQQGIV---------- 341

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
             LD                             +++   +   I      GG  V    L
Sbjct: 342 -FLD-----------------------------EVDKIGSVPGIHQLRDVGGEGVQQGLL 371

Query: 193 S---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
                    V     +K    +VQ                   V   +I  V +     L
Sbjct: 372 KLLEGTIVNVPEKNSRKLRGETVQ-------------------VDTTNILFVASGAFNGL 412

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
           D    I  R +   +G                + ++ + G  NT   +            
Sbjct: 413 DRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEA 470

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ TE
Sbjct: 471 RDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTE 530

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           D++ A+A +A+   +     GAR L+++ME++L +  F   +     V +D E V   
Sbjct: 531 DALKAIARLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGK 583


>gi|307705961|ref|ZP_07642786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
 gi|307620471|gb|EFN99582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK564]
          Length = 401

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 168

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 169 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 216

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 217 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKII 258

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q              K+G I       
Sbjct: 259 GFGQNNKA--IDE-------NSSYMQEIIAEDIQ--------------KFGII------- 288

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 289 ---------------PELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 333

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 334 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 388

Query: 418 YVR 420
            V 
Sbjct: 389 AVD 391


>gi|160939984|ref|ZP_02087330.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437128|gb|EDP14894.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/441 (21%), Positives = 174/441 (39%), Gaps = 93/441 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------- 49
           + +    +P  I +ELD Y+IGQ+ AK+ +A+A+ N ++R  L    +D           
Sbjct: 114 LTMKDIPAPHVIKAELDEYVIGQEKAKKVMAVAVYNHYKRAFLDQPPQDGAGEDAGTDKN 173

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
             +   NIL++GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+ 
Sbjct: 174 IVIEKSNILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLA 233

Query: 109 VAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
            A N V  ++R  +     I+  ++I           +   V ++ L+  E S  E+   
Sbjct: 234 AADNDVERAQRGII----FIDEIDKIAKKKQTNARDVSGESVQQELLKLLEGSTVEV--- 286

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                  + +        +  +N   +                    +P+L     +RL+
Sbjct: 287 ------PVGSNQKNAMTPMATVNTDNIL-------------FICGGAFPDLEEIIKERLM 327

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                     ++   +G +  D +DK                   D+L  V    + T  
Sbjct: 328 K---------KITMGFGSILKDTYDK-----------------DPDILGQVTNEDLRT-- 359

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                                  ++PE  GR PV V L+ L +     IL + ++ +  Q
Sbjct: 360 ---------------------FGMIPEFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQ 398

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DL 407
           Y+ L++ + + L F ++++  +A  A+   +     GAR L+ ++E  + DI +    D 
Sbjct: 399 YERLLEMDEVRLVFEDEALKWIAGEAIKRGT-----GARALRAILEEFMLDIMYEIPKDP 453

Query: 408 QEKTVVIDAEYVRLHIGDFPS 428
              +VV+   Y+    G    
Sbjct: 454 NIGSVVVTRPYLEKSGGPLIQ 474


>gi|270292403|ref|ZP_06198614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
 gi|270278382|gb|EFA24228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. M143]
          Length = 410

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              ++     +DE       +S     +  E +Q              K+G I       
Sbjct: 268 GFGQSNKA--IDE-------NSSYMQEIIAEDIQ--------------KFGII------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVDGTEKPILE 408


>gi|283795999|ref|ZP_06345152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
 gi|291076644|gb|EFE14008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. M62/1]
          Length = 587

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 170/428 (39%), Gaps = 88/428 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVGP 61
           P  I S+LD+Y++GQ+ AK+ +A+A+ N ++R           +    ++   NIL++GP
Sbjct: 237 PHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIGP 296

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  +    
Sbjct: 297 TGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAE--- 353

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            +    I+  ++I       +   +   V ++ L+  E S  E+          + +   
Sbjct: 354 -KGIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEV---------PVGSNQK 403

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                +  ++ + +                    +P+L     +RL              
Sbjct: 404 NALTPMTTVDTNNIL-------------FICGGAFPDLENIVKERL-------------- 436

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                           + S  G G   +G                       D    +  
Sbjct: 437 ---------------NKSSTMGFGAQLKGKYD--------------------DDPNLLGH 461

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                 R   ++PE  GR P+ V L++L K     ILT+ ++ ++ QY++L+  + + L 
Sbjct: 462 ATTEDLRKFGMIPEFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLV 521

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           F ED++  +A+ A+   +     GAR L+ ++E  ++DI +    D    +VVI   Y+ 
Sbjct: 522 FEEDALSWIAEEAIRKET-----GARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLE 576

Query: 421 LHIGDFPS 428
            + G    
Sbjct: 577 KNGGPMIE 584


>gi|296129242|ref|YP_003636492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           flavigena DSM 20109]
 gi|296021057|gb|ADG74293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas
           flavigena DSM 20109]
          Length = 425

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/432 (24%), Positives = 176/432 (40%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60
            P+EI   L++YI+GQ+ AKR++A+A+ N ++R Q     R        E+   NILL+G
Sbjct: 63  KPKEIFDFLEQYIVGQEPAKRSLAVAVYNHYKRIQAGEGARVPAGEEPVEIAKSNILLIG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE-- 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                A I   + I          S TR+V  + ++   +   E                
Sbjct: 181 -----AGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE---------------- 219

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                           + V   G +K                          +   ++  
Sbjct: 220 -------------GTTASVPPQGGRKHPHQEFI------------------QIDTTNVLF 248

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +       LDE   I +R    GIG          L   + + V   YG +  + +L   
Sbjct: 249 IVAGAFAGLDEI--ITSRAGRRGIGFGS------PLHSADDTDV---YGEVMPEDLLKF- 296

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR P+   +  L++     ILT+  + LI QY+ + + +G+ L
Sbjct: 297 ----------GLIPEFIGRVPIITTVSPLDRVALVRILTEPRNALIKQYQRMFQIDGVEL 346

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           +F E +++A+A+ A+   +     GAR L+ ++E VL+ + F      +   VVI  E V
Sbjct: 347 EFEEAAVEAVAEQALLRGT-----GARGLRAILEEVLQQVMFEVPSRDDVARVVITQEVV 401

Query: 420 RLHIGDFPSETD 431
             ++       D
Sbjct: 402 LENVNPTLVPRD 413


>gi|78780134|ref|YP_398246.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553649|sp|Q317Y5|CLPX_PROM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78713633|gb|ABB50810.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9312]
          Length = 455

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 167/436 (38%), Gaps = 93/436 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------D 49
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R                    
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEESKNSNSTDSQAT 134

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +   V               A++ I+                            EID ++
Sbjct: 195 SEMNV-------------ELAQKGII-------------------------YIDEID-KI 215

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A  S + S      G  V    L  L   +     +   +     C              
Sbjct: 216 ARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDC-------------- 261

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              +  D+ Q++   G  F+   D +  R   + IG +    Q +               
Sbjct: 262 ---IQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNN--------------- 303

Query: 290 SINTDHILFIASGAFHVS----RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
            ++T  ++       ++         L+PE  GR PV   L  L K     ILT     L
Sbjct: 304 -VDTKKLVEPRDSLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDAL 362

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + Q+K L+  + + L F  DS++A+A+ A    +     GAR L++++E ++ D+ ++  
Sbjct: 363 VKQFKTLLSMDNVELKFEPDSVEAIANEAYKRKT-----GARALRSIIEELMLDVMYTLP 417

Query: 406 DLQE-KTVVIDAEYVR 420
             +  K   I  + V 
Sbjct: 418 SEKNVKEFTITKKMVD 433


>gi|113205069|ref|NP_001037854.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial isoform 2 [Mus musculus]
 gi|38174645|gb|AAH61153.1| Caseinolytic peptidase X (E.coli) [Mus musculus]
          Length = 620

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 170/478 (35%), Gaps = 133/478 (27%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWR----------RQQLPADLRDELMPK------- 54
           I + LD+Y++GQ  AK+ +++A+ N ++          RQQ  A+ +  L P+       
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 232

Query: 55  ------------------------------------------NILLVGPTGVGKTAISRR 72
                                                     NILL+GPTG GKT +++ 
Sbjct: 233 ISPHGNALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKSNILLLGPTGSGKTLLAQT 292

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           LA+    PF   + T  T+ GYVG ++E +I  L+  A   V ++++  V          
Sbjct: 293 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEKAQQGIV---------- 342

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
             LD                             +++   +   I      GG  V    L
Sbjct: 343 -FLD-----------------------------EVDKIGSVPGIHQLRDVGGEGVQQGLL 372

Query: 193 S---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
                    V     +K    +VQ                   V   ++  V +     L
Sbjct: 373 KLLEGTIVNVPEKNSRKLRGETVQ-------------------VDTTNVLFVASGAFNGL 413

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
           D    I  R +   +G                + ++ + G  NT   +            
Sbjct: 414 DRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEA 471

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TE
Sbjct: 472 RDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTE 531

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           D++ A+A +A+   +     GAR L+++ME++L +  F   +     V +D E V   
Sbjct: 532 DALKAIARLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGK 584


>gi|47094323|ref|ZP_00232023.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 4b H7858]
 gi|47017294|gb|EAL08127.1| heat shock protein HslVU, ATPase subunit HslU [Listeria
           monocytogenes str. 4b H7858]
          Length = 192

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 142/192 (73%)

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           ++F+DE DKI +++ G    VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH
Sbjct: 1   MIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFH 60

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +S+P+DL+PE+QGRFP+R+ L  L + DF  ILT+ ++ LI QYK L+KTEGI L FT++
Sbjct: 61  MSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKE 120

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +++ +A++A  +N    +IGARRL T++E++LED+ F A ++  +++ +   YV   +  
Sbjct: 121 AVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAP 180

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 181 IMQNKDLTQFIL 192


>gi|298252431|ref|ZP_06976230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter
           racemifer DSM 44963]
 gi|297545664|gb|EFH79536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter
           racemifer DSM 44963]
          Length = 430

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 173/416 (41%), Gaps = 76/416 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I  +L  Y+IGQ+ AKRA+A+A+ N ++R  +   + D EL   NILL+GPTG GKT
Sbjct: 68  PKKIYEQLSSYVIGQERAKRALAVAVYNHYKRIGVGMQIDDVELGKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R  V     
Sbjct: 128 LLAQTLAKVLDVPFCIADATALTEAGYVGEDVENILLRLIQTADFDIARAERGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +    I+  VA+                
Sbjct: 184 ---IDEIDKIARKSDNPSITRDVSGEGVQQALLKI--IEGTVANVPPQ------------ 226

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                 +   +         I       +  L           + +    +   +  G  
Sbjct: 227 ---GGRKHPHQDFIQINTSNILFICGGAFEGL-----------EKIVEQRLGSNKMMGFS 272

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            +            +G    +E  Q  L  L             N D +L          
Sbjct: 273 GV----------KPSGETAEQEKDQPILTKL-------------NPDDLLKF-------- 301

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV V L  L++     ILT+ ++ ++ QY++ ++ + + L FT D++
Sbjct: 302 ---GLIPEFVGRLPVSVSLDPLDQEALVRILTEPKNAIVKQYQKFLQLDHVDLVFTSDAL 358

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +A A+ A+   +     GAR L++++E VL D+ +      + K V+I+ E +   
Sbjct: 359 EAAAERALKQKT-----GARGLRSIIEDVLLDVMYEIPSRADVKKVIINGEVIASR 409


>gi|295698386|ref|YP_003603041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Riesia pediculicola USDA]
 gi|291157211|gb|ADD79656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Riesia pediculicola USDA]
          Length = 420

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 169/430 (39%), Gaps = 83/430 (19%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLV 59
           F   P EI   LD YI+GQ  +K+ +++++ N  +R      +  ++   E+   NILL+
Sbjct: 63  FTKKPYEIKKHLDDYIVGQDRSKKVLSVSIYNHCKRLISNNFKRTSNNSIEIEKNNILLI 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ L+     PF   + T  TE GYVG +VE  I+ L+      V     
Sbjct: 123 GPTGSGKTLLAKTLSNYLNIPFAIADATTLTEAGYVGEDVENTIQKLLQRCNYDV----- 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                                               ++G I   EID +++  S ++S  
Sbjct: 178 ---------------------------------GLAQNGIIYIDEID-KISRKSDNLSIT 203

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  +   +     +   +   Q+                  +   +I 
Sbjct: 204 RDVSGEGVQQALLKLIEGTISSVPPQGGRKHPQQEFL---------------QIDTSNIL 248

Query: 240 MVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            +       LD+   I+ R +  +GIG   + +                Y + NT  IL 
Sbjct: 249 FICGGTFFGLDQI--ILKRLNKSSGIGFCAKLIDHS-------------YYNRNTSKIL- 292

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR    V L   N++    IL + +++LI QY++L + E +
Sbjct: 293 -CQVEPQDLIKFGLIPEFVGRLSTFVILDEQNETSLVKILKEPKNSLIKQYQKLFEMENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L F E+S   +A  A+   +     GAR L++++E +L D+ +    ++  K V+I+ +
Sbjct: 352 QLKFEEESFKEIAKKAILKRT-----GARGLKSILEDILLDVMYKLPSMKSVKQVIINKK 406

Query: 418 YVRLHIGDFP 427
            +   +    
Sbjct: 407 VISEKLEPVI 416


>gi|148993405|ref|ZP_01822922.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194397730|ref|YP_002038201.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
 gi|238690843|sp|B5E6L2|CLPX_STRP4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147927960|gb|EDK78980.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|194357397|gb|ACF55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pneumoniae G54]
          Length = 410

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/423 (23%), Positives = 166/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      R+          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRM------GEKVI 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q              K+G I       
Sbjct: 268 GFGQNNKA--IDE-------NSSYMQEIIAEDIQ--------------KFGII------- 297

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                          PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 298 ---------------PELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 343 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 397

Query: 418 YVR 420
            V 
Sbjct: 398 TVD 400


>gi|47847699|dbj|BAD21479.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1
           (CLPX) [Oryza sativa Japonica Group]
          Length = 554

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 170/432 (39%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------ADLRD 49
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R                           
Sbjct: 149 TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 208

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 209 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAA 268

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D                             +++ 
Sbjct: 269 ADFDVAAAQQGIVY-----------ID-----------------------------EVDK 288

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + S  +K  R   +               D
Sbjct: 289 ITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRG--------------D 334

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              +   +I  +   G  F+D    I  R   + IG             V  + +++   
Sbjct: 335 NIQIDTKNILFI--CGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLL 392

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + +    IA G         L+PE  GRFP+ V L SL++     +LT  ++ L  QY
Sbjct: 393 E-SVESGDLIAYG---------LIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQY 442

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +L +   + L FTE ++  ++  A+  N+     GAR L++++E +L +  +   +++ 
Sbjct: 443 TKLFEMNDVKLHFTEKALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRT 497

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 498 GKDKIDAVVVDE 509


>gi|88855130|ref|ZP_01129795.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
 gi|88815658|gb|EAR25515.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium
           PHSC20C1]
          Length = 425

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 166/428 (38%), Gaps = 90/428 (21%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKN 55
           F+   PREI + L+ Y+IGQ+ AKRA+++A+ N ++R +    +          E+   N
Sbjct: 61  FDLPKPREIYAFLEEYVIGQEAAKRALSVAVYNHYKRVRARNTITSADAVIDDVEIAKSN 120

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 121 ILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 180

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +    +         + I          S TR+V  + ++   +   E  +        
Sbjct: 181 RAETGIIY-------IDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 233

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                                                        ++          V  
Sbjct: 234 ----------------------------------------RKHPHQEFIQ-------VDT 246

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            ++  +       L+E   I  R    GIG               G+ + +K   +N   
Sbjct: 247 TNVLFIVAGAFAGLEEI--ISNRAGKKGIGF--------------GAPLHSKGDDVN--- 287

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE  GR PV   +  L++     ILT  ++ L+ QY+ + + 
Sbjct: 288 --LFGEVLPEDLHKFGLIPEFIGRLPVVTTVTQLDQVALMDILTTPKNALVRQYQRMFEI 345

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           +G+ L+F  D+++++AD+AV   +     GAR L+ ++E VL  I F    D     V++
Sbjct: 346 DGVELEFERDALESIADLAVLRQT-----GARGLRAILEEVLGPIMFDVPSDETVGRVIV 400

Query: 415 DAEYVRLH 422
               V  +
Sbjct: 401 TKAAVLEN 408


>gi|289449742|ref|YP_003475568.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184289|gb|ADC90714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 440

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 101/421 (23%), Positives = 172/421 (40%), Gaps = 87/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------DELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ +AK+ + +A+ N ++R               +L   N++L+GP
Sbjct: 77  SPKEMKAILDEYVIGQDEAKKTLCVAVYNHYKRVFRDPQSETAKEDTVQLDKSNVMLIGP 136

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A   + +++R  
Sbjct: 137 TGCGKTLLASTLAKILHVPFAIADATALTEAGYVGEDVENILLRLIQNANFDIAQAQRGI 196

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +                                         EID ++   S + S    
Sbjct: 197 I--------------------------------------YIDEID-KITRRSDNPSITRD 217

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L S +     +   +                     + +  D+  ++
Sbjct: 218 VSGEGVQQALLKILESTIANVPPQGGRKHP-----------------HQEFIQIDTTNIL 260

Query: 242 ENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
              G  F D  DKI+ R +    IG   E      L                 D    ++
Sbjct: 261 FICGGAF-DGLDKIIRRRTNRKSIGFGAEIGSNSSL-----------------DDDDVLS 302

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR P+ V LK+L++     +L++ +++LI QYK L++ +G+ L
Sbjct: 303 QLEPRDLLKFGLIPEFIGRVPINVTLKALDQQQLIKVLSEPKNSLIKQYKYLLELDGVDL 362

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +FT ++I+ +A  A+   +     GAR L+ +ME ++ D+ +        K  VI A  V
Sbjct: 363 EFTPEAINEIAAAAIKRKT-----GARGLRAIMEEIMLDVMYELPSRHDIKKCVIGASVV 417

Query: 420 R 420
           R
Sbjct: 418 R 418


>gi|257068143|ref|YP_003154398.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
 gi|256558961|gb|ACU84808.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Brachybacterium faecium DSM 4810]
          Length = 444

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 166/436 (38%), Gaps = 103/436 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------------------D 46
           PREI   L+ Y++GQ+ AKRA+A+A+ N ++R +                         D
Sbjct: 66  PREIFDFLEEYVVGQEPAKRALAVAVYNHYKRVRAQESEQSATPAKSAAASLAEEVDSED 125

Query: 47  LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
            R E+   N++LVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L
Sbjct: 126 DRIEVAKSNVMLVGPTGCGKTYLAQTLARMLDVPFTMADATALTEAGYVGEDVENILLKL 185

Query: 107 VDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
           +  A   V+++    +         + I          S TR+V  + ++   +   E  
Sbjct: 186 LQAADYDVKKAEHGIIY-------IDEIDKIGRKSENPSITRDVSGEGVQQALLKILEGT 238

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +                                                     ++    
Sbjct: 239 VAAVPPQGG----------------------------------------RKHPHQEFI-- 256

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
                 +   ++  +       +++   I  R    GIG   E         +       
Sbjct: 257 -----QIDTTNVLFIVAGAFAGIEDI--IAQRIGKRGIGFGSELHSPLEQEQL------- 302

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
            YG +  + +L              L+PE  GR PV   + +L+++    ILT+  + L+
Sbjct: 303 -YGKLLPEDLLKF-----------GLIPEFIGRLPVISSVSNLDRAALISILTEPRNALV 350

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q++++   +G+ LDF   +++A+AD A+   +     GAR L+ ++E  L+ + F    
Sbjct: 351 KQFQKMFALDGVELDFERSALEAIADKAIERET-----GARGLRAILEESLQPVMFEVPS 405

Query: 407 LQE-KTVVIDAEYVRL 421
             +   VVI    V  
Sbjct: 406 RDDVVKVVITEGVVTE 421


>gi|238926708|ref|ZP_04658468.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885465|gb|EEQ49103.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 431

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 99/431 (22%), Positives = 171/431 (39%), Gaps = 89/431 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTGV 64
           P  I   LD YII Q  AK+ +A+A+ N ++R +       D   E+   N++++GP+G 
Sbjct: 76  PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A   V          
Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAADKDV---------- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE  I+                            E D ++A  S   ++     G
Sbjct: 186 ---EKAEHGII-------------------------YLDEFD-KIARKSGANNSITADPG 216

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  L ++    +     +  R   +                  T+  D+  ++   
Sbjct: 217 HEGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILFIV 260

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F+   +KI+A+    G      G +      V G  +  +Y ++             
Sbjct: 261 GGAFVG-IEKIIAKRLKKGNVAMGFGAE------VRGKDLEKEYDAL------------I 301

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           H   P DL     +PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ 
Sbjct: 302 HQVTPEDLMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVE 361

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L FTED++ A+A  A+   +     GAR L+ ++E V+ D+ F    +   + V +  E 
Sbjct: 362 LVFTEDALRAVAKKAIERKT-----GARSLRGIIEEVMLDVMFDIPRETAPRRVTVTKEC 416

Query: 419 VRLHIGDFPSE 429
           +          
Sbjct: 417 ITEGAAPTVEN 427


>gi|295090911|emb|CBK77018.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Clostridium cf. saccharolyticum K10]
          Length = 499

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 170/428 (39%), Gaps = 88/428 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVGP 61
           P  I S+LD+Y++GQ+ AK+ +A+A+ N ++R           +    ++   NIL++GP
Sbjct: 149 PHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIGP 208

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  +    
Sbjct: 209 TGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAE--- 265

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            +    I+  ++I       +   +   V ++ L+  E S  E+          + +   
Sbjct: 266 -KGIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEV---------PVGSNQK 315

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                +  ++ + +                    +P+L     +RL              
Sbjct: 316 NALTPMTTVDTNNIL-------------FICGGAFPDLENIVKERL-------------- 348

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                           + S  G G   +G                       D    +  
Sbjct: 349 ---------------NKSSTMGFGAQLKGKYD--------------------DDPNLLGH 373

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                 R   ++PE  GR P+ V L++L K     ILT+ ++ ++ QY++L+  + + L 
Sbjct: 374 ATTEDLRKFGMIPEFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLV 433

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           F ED++  +A+ A+   +     GAR L+ ++E  ++DI +    D    +VVI   Y+ 
Sbjct: 434 FEEDALSWIAEEAIRKET-----GARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLE 488

Query: 421 LHIGDFPS 428
            + G    
Sbjct: 489 KNGGPMIE 496


>gi|304437816|ref|ZP_07397765.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369173|gb|EFM22849.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 431

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/431 (22%), Positives = 171/431 (39%), Gaps = 89/431 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTGV 64
           P  I   LD YII Q  AK+ +A+A+ N ++R +       D   E+   N++++GP+G 
Sbjct: 76  PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A   V          
Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAADKDV---------- 185

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE  I+                            E D ++A  S   ++     G
Sbjct: 186 ---EKAEHGII-------------------------YLDEFD-KIARKSGANNSITADPG 216

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                  L ++    +     +  R   +                  T+  D+  ++   
Sbjct: 217 HEGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILFIV 260

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F+   +KI+A+    G      G +      V G  +  +Y ++             
Sbjct: 261 GGAFVG-IEKIIAKRLKKGNVAMGFGAE------VRGKDLEKEYDAL------------I 301

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           H   P DL     +PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ 
Sbjct: 302 HQVTPEDLMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVE 361

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           L FTED++ A+A  A+   +     GAR L+ ++E V+ D+ F    +   + V +  E 
Sbjct: 362 LVFTEDALRAVAKKAIERKT-----GARSLRGIIEEVMLDVMFDIPRETAPRRVTVTKEC 416

Query: 419 VRLHIGDFPSE 429
           +          
Sbjct: 417 ITEGAAPTVEN 427


>gi|183601400|ref|ZP_02962770.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683457|ref|YP_002469840.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191100|ref|YP_002968494.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196506|ref|YP_002970061.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219006|gb|EDT89647.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621107|gb|ACL29264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249492|gb|ACS46432.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251060|gb|ACS47999.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794089|gb|ADG33624.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 442

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 178/439 (40%), Gaps = 103/439 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------------- 45
            P +I   LD+Y+IGQ DAKR +++A+ N ++R Q+                        
Sbjct: 64  KPSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSIL 123

Query: 46  DLRDELM--PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
           D  DE+     NILL+GPTGVGKT +++ LA+    PFI V+ T  TE GYVG +VE ++
Sbjct: 124 DPLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVL 183

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             L+  A   V  +R   V                                         
Sbjct: 184 SRLLQAADGDVDRARHGIV--------------------------------------YID 205

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E+D ++A  S D ++             L ++    +       + + V   +       
Sbjct: 206 EVD-KIARKSGDNTSMTRDVSGEGVQQALLKILEGTL-------VHVPVDGAHR------ 251

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
             +  +   +    I  +     V LDE   +  R   +  G    G    + P+ E   
Sbjct: 252 -HKDGETVELDTSDILFICGGAFVGLDEI--VSRRLGRHESGF---GASWRVNPIDEHEI 305

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
               Y  +N D +               LLPE  GR PV   L  L   D + +LT   +
Sbjct: 306 ----YRQVNADDLAEF-----------GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTN 350

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY++L   +G+ L FT+ +++A+A  A+        +GAR L++++E +LE+  F 
Sbjct: 351 ALLKQYQKLFSVDGVTLTFTDAAVEAIASTALERG-----VGARGLRSIIESILEETMFE 405

Query: 404 ASDLQEKT-VVIDAEYVRL 421
             ++ + T VV++A+ V  
Sbjct: 406 LPNMDDVTEVVVNADCVTE 424


>gi|294786959|ref|ZP_06752213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia
           denticolens F0305]
 gi|294485792|gb|EFG33426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia
           denticolens F0305]
          Length = 462

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 178/431 (41%), Gaps = 106/431 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----------------QLPADLRD-E 50
            P  I   LD Y+IGQ +AK+A+++A+ N ++R                    +DL + E
Sbjct: 102 KPSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVE 161

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTG GKT ++  LAR+   PF  V+ T  TE GYVG +VE I++ L+  A
Sbjct: 162 ISKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 221

Query: 111 INIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              +  ++      DE+ + A  + E            TS TR+V  + ++   +     
Sbjct: 222 DGDISRAQQGIIYIDEIDKIARKSGEN-----------TSITRDVSGEGVQQALLKI--- 267

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            IE    S  +          +  +N S++                    +  L      
Sbjct: 268 -IEGTVASVPVKGSRKHEEQEMVQINTSDIL-------------FICGGAFVGLEDIIRH 313

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           RL                              R++G G   S +    D +  +      
Sbjct: 314 RL----------------------------GKRETGFGTDWSSQEKSSDEILSLVTPDDL 345

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           T++G                      LLPE  GR PV   + SL   D   ILT+  + L
Sbjct: 346 TEFG----------------------LLPEFIGRMPVLATMSSLTVDDLVSILTEPANAL 383

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + Q+ +++  +G+ L FT+ +++++A  +++  +     GAR L+++MER+LED  +   
Sbjct: 384 VKQFAKILAVDGVELVFTDQALESIAQRSLDRGT-----GARGLRSIMERILEDAMYQVP 438

Query: 406 DLQEKT-VVID 415
           D ++ + V +D
Sbjct: 439 DREDVSQVRVD 449


>gi|242059473|ref|XP_002458882.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor]
 gi|241930857|gb|EES04002.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor]
          Length = 623

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 177/433 (40%), Gaps = 91/433 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R       ++                  
Sbjct: 206 TPREMCRRLDEFVIGQAKAKKVLSVAVYNHYKRIYNANVQKESAANSGLPDAGHDDQNIV 265

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I++ L+  
Sbjct: 266 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLLVA 325

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSN-TREVFRKKLRDGEISDKEIDIE 168
           A   V+ +++  V        +E  +D +  K  ++N +R+V  + ++   +   E  + 
Sbjct: 326 AEYNVQAAQQGIV------YIDE--IDKITKKAESANVSRDVSGEGVQQALLKILEGTV- 376

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V+                +   ++                       + +L +  S+R  
Sbjct: 377 VSIPEKGSRKNSRNDSIQIDTTDI----------------LFICGGAFVDLEKTISERRQ 420

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D       SI                   R +    G S   V   LL  VE   +  +Y
Sbjct: 421 D------SSIGFGAPV-------------RTNMRSSGASCPMVTSTLLESVESGDL-VRY 460

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           G I                      PE  GR P+ V L +LN+     +LT+ +++L  Q
Sbjct: 461 GLI----------------------PEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQ 498

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+++     + L FT+ ++  +A  A+  ++     GAR L+ ++E VL +  +   D +
Sbjct: 499 YRKMFNLNKVRLHFTDGALRLVAKKAIAKST-----GARGLRAILETVLLEAMYEIPDEK 553

Query: 409 EKTVVIDAEYVRL 421
                +DA  V  
Sbjct: 554 TGNERVDAVVVDE 566


>gi|72383093|ref|YP_292448.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. NATL2A]
 gi|124026831|ref|YP_001015946.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           str. NATL1A]
 gi|123759843|sp|Q46ID3|CLPX_PROMT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214801|sp|A2C5C2|CLPX_PROM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|72002943|gb|AAZ58745.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Prochlorococcus marinus str. NATL2A]
 gi|123961899|gb|ABM76682.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. NATL1A]
          Length = 451

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 173/428 (40%), Gaps = 81/428 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P EI   LD  ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+G
Sbjct: 82  KPIEIKKFLDAQVVGQEPAKKILSVAVYNHYKRLAWKGDGSGETDLTATKLQKSNILLIG 141

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 142 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDLAQRG 201

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +  K ++  VA+         
Sbjct: 202 IIY-------IDEIDKIARKSENPSITRDVSGEGVQQALL--KMLEGTVANVPPQ-GGRK 251

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            P G S+ I     LF                   +  L      RL       ++SI  
Sbjct: 252 HPYGDSIQIDTSQILF--------------ICGGAFVGLDDVVEKRL------GKNSIGF 291

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           ++N               ++      +R+ V  DL+  +E   +  KYG           
Sbjct: 292 IQN---------------ENRTRTKSNRDRVGADLINDLEPDDL-VKYG----------- 324

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      L+PE  GR PV   L+ LN      ILT+    L+ Q++ L+  + + L
Sbjct: 325 -----------LIPEFIGRMPVSAILEPLNAKALESILTEPRDALVKQFRTLLSMDNVEL 373

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
            F ED+++A+A  A    +     GAR L+ ++E ++ D+ +S     + K   +  + V
Sbjct: 374 SFDEDAVEAIAQEAYKRKT-----GARALRGIVEEIMLDLMYSLPSQTKIKNFNVTKKMV 428

Query: 420 RLHIGDFP 427
               G   
Sbjct: 429 DESTGGKV 436


>gi|58699474|ref|ZP_00374209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534008|gb|EAL58272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 425

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 172/428 (40%), Gaps = 92/428 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I        +TS TR+V  + ++   +   E  +            
Sbjct: 182 GIV-------FIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGG---- 230

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                                        +   Q+                  V   +I 
Sbjct: 231 ----------------------------RKHPQQEFI---------------QVDTSNIL 247

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       LD+   I AR  G  +G   +  Q                           
Sbjct: 248 FICGGAFEGLDKI--IEARKKGTSVGFGADISQSKEQK---------------------- 283

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A H  +P D     L+PE  GR P+   L  L+  D   +LT+  + LI QYK L+ 
Sbjct: 284 KKNALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLA 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA--SDLQEKTV 412
              + L+F++++I A+A  A++  +     GAR L+ ++E +L DI +++     +  T+
Sbjct: 344 FSKVNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGSFEGSTI 398

Query: 413 VIDAEYVR 420
           VI  + V 
Sbjct: 399 VITKKMVE 406


>gi|297626028|ref|YP_003687791.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921793|emb|CBL56353.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding
           subunit ClpX) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 425

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/419 (26%), Positives = 173/419 (41%), Gaps = 86/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------LRDELMPKNILLVGP 61
            P EIVS L+ YIIGQ  AK+A+A+A+ N ++R Q  AD         EL   NILL+GP
Sbjct: 64  KPAEIVSFLNSYIIGQDAAKKALAVAVYNHYKRVQAQADSSSKHDDDVELAKSNILLIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+ ++   
Sbjct: 124 TGCGKTYLAQTLARMLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAQTGI 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +                                         EID +VA  S + S    
Sbjct: 184 I--------------------------------------YIDEID-KVARKSENPSITRD 204

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G  V    L  L   V     +   +   Q+                  +   ++  +
Sbjct: 205 VSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI---------------QIDTTNVLFI 249

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
                  L+E   I  R    G+G + + V+R  + L   + V  +              
Sbjct: 250 VGGAFSGLEEI--IADRVGQGGVGFTNDSVKRQPVGLDPFAGVRPEDLH----------- 296

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   +  L+    R IL +  + L+ Q+++L + +G+ L+
Sbjct: 297 -------TFGLIPEFIGRLPVITTVPRLDADVLRRILVEPRNALVKQFEKLFELDGVELE 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            T+D++ A+A+ AV  N+     GAR L+ ++E  L D+ F     +E   VVI  + V
Sbjct: 350 LTDDAVSAVAEKAVTRNT-----GARGLRAILEETLLDVMFEVPSHEEIGQVVITGDVV 403


>gi|196230687|ref|ZP_03129548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chthoniobacter flavus Ellin428]
 gi|196225028|gb|EDY19537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chthoniobacter flavus Ellin428]
          Length = 428

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/443 (23%), Positives = 171/443 (38%), Gaps = 97/443 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-------------RDELMPK 54
            P EI  +LD+++IGQ+ AK+ +++A+ N ++R      L               E+   
Sbjct: 62  KPMEIRRQLDQFVIGQERAKKVLSVAVHNHYKRILHNQSLGSGNAVQQMDPLGDVEIEKS 121

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           N+LL+GPTG GKT ++R LAR+   PF   + T  TE GYVG +VE II  L+  +   V
Sbjct: 122 NVLLIGPTGSGKTLLARTLARIIDVPFCIADATTLTEAGYVGEDVENIILRLLQASDYDV 181

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +    V         + I          S TR+V  + ++                  
Sbjct: 182 KRAEIGIVY-------IDEIDKIGRKTDNVSITRDVSGEGVQQA---------------- 218

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                                   ++         +  Q       ++          V 
Sbjct: 219 ------------------------LLKILEGTTCNVPPQGGRKHPHQEYI-------QVS 247

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            + I  +     V L++   I  R      G GVS        +P  E            
Sbjct: 248 TEKILFICGGAFVGLEKM--IQKRMGKKVLGFGVSAHEAVEAEVPASEAIRF-------- 297

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           T+    ++ G         ++PE  GR PV   L  L + +  +ILTDT++ +I Q+ +L
Sbjct: 298 TEPEDLLSFG---------MIPEFVGRLPVITALDQLTEDELVMILTDTKNAMIKQFTKL 348

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
           +  EG+ L+ T+D++ ALA  A    +     GAR L++++ER++ DI +      +   
Sbjct: 349 LSLEGVSLNVTKDALRALATEAAKKGT-----GARALRSMLERIMLDIMYDVPSRDDIAE 403

Query: 412 VVIDAEYVRLHIGDFP---SETD 431
           V I+   V            + D
Sbjct: 404 VTINRAVVEGKKQPLIRRKQDKD 426


>gi|76789445|ref|YP_328531.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           A/HAR-13]
 gi|237805056|ref|YP_002889210.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|123758566|sp|Q3KKY9|CLPX_CHLTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|76167975|gb|AAX50983.1| ClpX [Chlamydia trachomatis A/HAR-13]
 gi|231273356|emb|CAX10271.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis B/TZ1A828/OT]
          Length = 419

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 168/418 (40%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R +    D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGII--- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  T++++S      G 
Sbjct: 184 -----------------------------------YIDEID-KIGRTTANVSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     K   +   Q+             ++ + +       +    
Sbjct: 208 GVQQALLKIIEGTVANIPPKGGRKHPNQE----------YIRVNTENI-----LFIVGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   I  R     IG S E            +  +  +     +    IA G   
Sbjct: 253 FVNLDKI--IAKRLGRTTIGFSEETDL---------AVTNRDHLLAKVETEDLIAFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++
Sbjct: 299 ------MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKE 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ A+A  A    +     GAR L  ++E +L D+ F    D   + + I+ + +  +
Sbjct: 353 ALYAIAQKAKQAKT-----GARALGMILENLLRDLMFEIPSDPTVEAIRIEEDTITQN 405


>gi|58696872|ref|ZP_00372387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630254|ref|YP_002727045.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp.
           wRi]
 gi|225677383|ref|ZP_03788352.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|58536915|gb|EAL60095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225590573|gb|EEH11831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225592235|gb|ACN95254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp.
           wRi]
          Length = 425

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 173/428 (40%), Gaps = 92/428 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I        +TS TR+V  + ++   +   E  +            
Sbjct: 182 GIV-------FIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGG---- 230

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                                        +   Q+                  V   +I 
Sbjct: 231 ----------------------------RKHPQQEFI---------------QVDTSNIL 247

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       LD+   I AR  G  +G   +  Q                           
Sbjct: 248 FICGGAFEGLDKI--IEARKKGTSVGFGADISQSKEQK---------------------- 283

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A H  +P D     L+PE  GR P+   L  L+  D   +LT+  + LI QYK L+ 
Sbjct: 284 KKNALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLA 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTV 412
              + L+F++++I A+A  A++  +     GAR L+ ++E +L DI +++ +   +  T+
Sbjct: 344 FSKVNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTI 398

Query: 413 VIDAEYVR 420
           VI  + V 
Sbjct: 399 VITKKMVE 406


>gi|302385024|ref|YP_003820846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
 gi|302195652|gb|ADL03223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           saccharolyticum WM1]
          Length = 477

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 172/427 (40%), Gaps = 87/427 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------QLPADLRDELMPKNILLVGPT 62
           P  I  +LD Y+IGQ+ AK+ +++A+ N ++R       +   +   ++   NIL++GPT
Sbjct: 128 PHVIRRKLDDYVIGQEQAKKVISVAVYNHYKRVYLTDSRKKDEEENVQIEKSNILMIGPT 187

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ R   
Sbjct: 188 GSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLTAADNDVDKAER--- 244

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                I  +E  +D +  K +TS+                   D+       ++      
Sbjct: 245 ---GIIFIDE--IDKIAKKKSTSSR------------------DVSGESVQQELLKLLEG 281

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
               V + +  +     M +   + I       +P+L     +RL               
Sbjct: 282 STVEVPVGSNQKNALTPMTAVSTENILFICGGAFPDLEDIIKERL--------------- 326

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                              + IG S E   R        S V+ +               
Sbjct: 327 ----------------KEKSSIGFSAELKDRYEKDPNILSHVTNEDL------------- 357

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                R   ++PE  GR P+ V L+SL+K     +L + ++ ++ QYK L++ + + L F
Sbjct: 358 -----RKFGMIPEFLGRLPITVTLESLDKDLLVRVLKEPKNAILKQYKRLLELDEVNLVF 412

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            +++++ +A+ A+   +     GAR L+ ++E  + DI +    D    +VVI   Y+  
Sbjct: 413 EDEALEWIAEEALKKKT-----GARALRAIIENFMLDIMYEVPKDPNIGSVVITRAYLDK 467

Query: 422 HIGDFPS 428
           + G    
Sbjct: 468 NGGPLIQ 474


>gi|166154047|ref|YP_001654165.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           434/Bu]
 gi|166154922|ref|YP_001653177.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335248|ref|ZP_07223492.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis L2tet1]
 gi|238687397|sp|B0B8T1|CLPX_CHLT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687445|sp|B0BAG0|CLPX_CHLTB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|165930035|emb|CAP03518.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis 434/Bu]
 gi|165930910|emb|CAP06472.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 419

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 167/418 (39%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R +    D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGII--- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  T++++S      G 
Sbjct: 184 -----------------------------------YIDEID-KIGRTTANVSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     K   +   Q+             ++ + +       +    
Sbjct: 208 GVQQALLKIIEGTVANIPPKGGRKHPNQE----------YIRVNTENI-----LFIVGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   I  R     IG S E            +  +  +     +    I  G   
Sbjct: 253 FVNLDKI--IAKRLGRTTIGFSEETDL---------AVTNRDHLLAKVETEDLITFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++
Sbjct: 299 ------MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKE 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ A+A  A    +     GAR L  ++E +L D+ F    D   + + I+ + +  +
Sbjct: 353 ALYAIAQKAKQAKT-----GARALGMILENLLRDLMFEIPSDPTVEAIRIEEDTITQN 405


>gi|159904324|ref|YP_001551668.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9211]
 gi|238687133|sp|A9BDA1|CLPX_PROM4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|159889500|gb|ABX09714.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9211]
          Length = 453

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 166/440 (37%), Gaps = 86/440 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P +I   LD+ ++GQ+ AK+ +++A+ N ++R     D   E       L   NILL+G
Sbjct: 83  KPIDIKDFLDKQVVGQEVAKKILSVAVYNHYKRLAWQGDGNQETDLTATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   +  ++R 
Sbjct: 143 PTGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDIELAQRG 202

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 203 II--------------------------------------YIDEID-KIARKSENPSITR 223

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L   V     +   +     C                 +  D+ Q+
Sbjct: 224 DVSGEGVQQALLKMLEGTVANVPPQGGRKHPYHDC-----------------IQIDTSQI 266

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +   G  F+   D +  R   N IG             +   S    + + + D+   I 
Sbjct: 267 LFICGGAFVGLEDIVQKRLGKNSIGF------------MPTDSRGQNHLNRDLDNNQMIN 314

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +          L+PE  GR PV   L+ LN      IL +    +I Q++ LM  + + L
Sbjct: 315 NLEPDDLIRYGLIPEFIGRMPVTAVLEPLNSEALEAILKEPRDAVIKQFRTLMSMDNVKL 374

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           +F E ++ A+A  A    +     GAR L+ ++E ++ D+ +     +  +   +  + V
Sbjct: 375 EFDEGAVTAIAQEAFRRKT-----GARALRGIVEELMVDLMYKLPSEKNVSDFTVTKKMV 429

Query: 420 RL-----HIGDFPSETDMYH 434
                   +   PS   + H
Sbjct: 430 DEMIIGGKVLKLPSNEKIDH 449


>gi|119963777|ref|YP_948114.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
 gi|119950636|gb|ABM09547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter
           aurescens TC1]
          Length = 450

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 173/428 (40%), Gaps = 93/428 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKN 55
            PREI   L  Y+IGQ+ AKR++A+A+ N ++R Q                   E+   N
Sbjct: 84  KPREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKAGSLGEGSHHEDVEIAKSN 143

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 144 ILLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 203

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           +             AE+ I+                            EID +++  S +
Sbjct: 204 K-------------AEQGII-------------------------YIDEID-KISRKSEN 224

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            S      G  V    L  L   V     +   +                     + +  
Sbjct: 225 PSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP-----------------HQEFIQI 267

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           D+  ++      F    D I +R    GIG           PL E       YG +  + 
Sbjct: 268 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGA--------PLNEARDNVDTYGEVMPED 319

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +L              L+PE  GR PV   + SL++     IL+  ++ L+ QY+++ + 
Sbjct: 320 LLKF-----------GLIPEFIGRLPVITTVSSLDRPALIQILSTPKNALVKQYQKMFQL 368

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           +G+ L F +D++DA+AD A+   +     GAR L+ +ME VL  + F      +  TVVI
Sbjct: 369 DGVELQFDDDALDAIADQALERGT-----GARGLRAIMEDVLLPVMFDLPSRDDIATVVI 423

Query: 415 DAEYVRLH 422
            A+ V   
Sbjct: 424 TADVVAKK 431


>gi|111658475|ref|ZP_01409148.1| hypothetical protein SpneT_02000375 [Streptococcus pneumoniae
           TIGR4]
          Length = 372

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 165/423 (39%), Gaps = 85/423 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 20  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 79

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 80  IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 139

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 140 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 187

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 188 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 229

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 230 GFGQNNKA--IDE-------NSSYMQEIIAEDIQK------------------------- 255

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 256 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 304

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 305 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 359

Query: 418 YVR 420
            V 
Sbjct: 360 TVD 362


>gi|288870678|ref|ZP_06114933.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
 gi|288866331|gb|EFC98629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           hathewayi DSM 13479]
          Length = 498

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/437 (21%), Positives = 172/437 (39%), Gaps = 90/437 (20%)

Query: 2   KLTFNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELM 52
           K  F+      P  I   LD Y+IGQ+ AK+ +++A+ N ++R          +   ++ 
Sbjct: 137 KPEFDLKDIPAPHIIKQRLDEYVIGQEQAKKVISVAVYNHYKRVFLVDSDKKEEENVQIE 196

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NIL++GPTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N
Sbjct: 197 KSNILMIGPTGSGKTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADN 256

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            V  ++R  +            +D +       NT                  D+     
Sbjct: 257 DVDRAQRGII-----------FIDEIDKIAKKKNTNSR---------------DVSGESV 290

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             ++          V + +  +     M +     I       +P+L     +RL +  +
Sbjct: 291 QQELLKLLEGSNVEVPVGSNQKNALTPMTTVSTDNILFICGGAFPDLEDIIKERLTNKSS 350

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +          +     D++DK                   D+L  V    +        
Sbjct: 351 I---------GFAAELKDKYDK-----------------DPDILGRVTNEDL-------- 376

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                          R   ++PE  GR P+ V L+SL K     IL +  + ++ QY++L
Sbjct: 377 ---------------RKFGMIPEFLGRLPITVTLQSLTKELLVRILKEPRNAILKQYEKL 421

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKT 411
           ++ + + L F +D+++ +A+ A+   +     GAR L++++E  + DI +    D +  +
Sbjct: 422 LELDEVKLVFEDDALEWIAEQAMKKET-----GARALRSIIEDFMLDIMYEIPKDPEIGS 476

Query: 412 VVIDAEYVRLHIGDFPS 428
           VVI   Y+  + G    
Sbjct: 477 VVITRAYLDKNGGPLIQ 493


>gi|126640550|ref|YP_001083534.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter
           baumannii ATCC 17978]
          Length = 364

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 160/415 (38%), Gaps = 82/415 (19%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGVGKTAISRRLARL 76
           IGQ  AK+ +++A+ N ++R ++          E+   NILL+GPTG GKT +++ LARL
Sbjct: 2   IGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGSGKTLLAQTLARL 61

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
              PF   + T  TE GYVG +VE I++ L+  A   V ++++  +         + I  
Sbjct: 62  LDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY-------IDEIDK 114

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
                   S TR+V  + ++   +  K I+  VA                          
Sbjct: 115 ITRKSENPSITRDVSGEGVQQALL--KMIEGTVASIPPQGG------------------- 153

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                                   ++          +   +I  +       L++   + 
Sbjct: 154 -------------------RKHPQQEFIQ-------IDTSNILFICGGAFAGLEKI--VQ 185

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
            R    GIG + +   +D    +       +     TD + F             L+PE 
Sbjct: 186 QRQEKGGIGFTADVKNKDETKKLAELFRQVE----PTDLVKF------------GLIPEF 229

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR PV   L+ L++     ILT+ ++ L  QY+ L   E + L F + ++ A+A  A+ 
Sbjct: 230 IGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALE 289

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSET 430
            N+     GAR L++++E VL +  +      +  TV I+   +           
Sbjct: 290 RNT-----GARGLRSILENVLLETMYDLPSRTDVGTVFINEAVINGEAEPVYKSE 339


>gi|15605438|ref|NP_220224.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis D/UW-3/CX]
 gi|255311534|ref|ZP_05354104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 6276]
 gi|255317835|ref|ZP_05359081.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 6276s]
 gi|255349097|ref|ZP_05381104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 70]
 gi|255503634|ref|ZP_05382024.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis 70s]
 gi|255507313|ref|ZP_05382952.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis D(s)2923]
 gi|6831516|sp|O84711|CLPX_CHLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3329160|gb|AAC68300.1| CLP Protease ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525749|emb|CBJ15230.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia
           trachomatis Sweden2]
 gi|296435321|gb|ADH17499.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis E/150]
 gi|296436249|gb|ADH18423.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/9768]
 gi|296437178|gb|ADH19348.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/11222]
 gi|296438109|gb|ADH20270.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/11074]
 gi|296439038|gb|ADH21191.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis E/11023]
 gi|297140610|gb|ADH97368.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           trachomatis G/9301]
 gi|297748836|gb|ADI51382.1| hypothetical protein CTDEC_0705 [Chlamydia trachomatis D-EC]
 gi|297749716|gb|ADI52394.1| hypothetical protein CTDLC_0705 [Chlamydia trachomatis D-LC]
          Length = 419

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 168/418 (40%), Gaps = 81/418 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +++A+ N ++R +    D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGII--- 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++  T++++S      G 
Sbjct: 184 -----------------------------------YIDEID-KIGRTTANVSITRDVSGE 207

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  +   V     K   +   Q+             ++ + +       +    
Sbjct: 208 GVQQALLKIIEGTVANIPPKGGRKHPNQE----------YIRVNTENI-----LFIVGGA 252

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
            V LD+   I  R     IG S E            +  +  +     +    IA G   
Sbjct: 253 FVNLDKI--IAKRLGRTTIGFSEETDL---------AVTNRDHLLAKVETEDLIAFG--- 298

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PE  GRF   V+ + L   +   ILT+  + ++ QY EL + E + L F ++
Sbjct: 299 ------MIPEFIGRFNCVVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKE 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ++ A+A  A    +     GAR L  ++E +L D+ F    D   + + I+ + +  +
Sbjct: 353 ALYAIAQKAKQAKT-----GARALGMILENLLRDLMFEIPSDPTVEAIRIEEDTITQN 405


>gi|153813885|ref|ZP_01966553.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756]
 gi|145848281|gb|EDK25199.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756]
          Length = 431

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 95/422 (22%), Positives = 171/422 (40%), Gaps = 83/422 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 77  PHKIKARLDEYVVGQEKAKKAMAVAVYNHYKRVASDTMDDIEIEKSNMLMIGPTGSGKTY 136

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +      EQ  I
Sbjct: 137 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERA------EQGII 190

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVADTSSDISNFDIPGGASV 187
             +E  +D +  K  TSN R+V  + ++ G +   E  ++EV   ++  +          
Sbjct: 191 FIDE--IDKI-AKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVP------ 241

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                       + +   K I       +P+L     +RL                    
Sbjct: 242 ------------LTTVNTKNILFICAGAFPDLEDIIKERL-------------------- 269

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                     + +  G     +        ++   +V                       
Sbjct: 270 ---------TKKTSMGFNAELKDKYEHDEDILSKVTV--------------------EDL 300

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           R   ++PE  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + ++
Sbjct: 301 RKFGMIPEFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGAL 360

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDF 426
           + +A+ A+       D GAR L+ ++E  + DI +    D     V I  EY+    G  
Sbjct: 361 ETIAEKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYIEGTGGPV 415

Query: 427 PS 428
             
Sbjct: 416 IK 417


>gi|226356973|ref|YP_002786713.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus
           deserti VCD115]
 gi|226318963|gb|ACO46959.1| putative ATP-dependent Clp protease, ATP-binding subunit clpX
           [Deinococcus deserti VCD115]
          Length = 401

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 97/413 (23%), Positives = 165/413 (39%), Gaps = 86/413 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPTG GKT
Sbjct: 60  TPKEIKAYLDDFVIGQDEAKKALAVAVVSHYQRLAHP---DVNLQKSNILLIGPTGTGKT 116

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA +   PF   + T  TE GYVG +VE +I  L+  A   V  + R  +     
Sbjct: 117 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAAEYDVGAAERGIIY---- 172

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I         TS TR+V  + ++   +    I+  VA                 
Sbjct: 173 ---IDEIDKIARKSEGTSITRDVSGEGVQQALLKI--IEGTVAQVPPQGG---------- 217

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                                +   Q+                  V+  +I  +      
Sbjct: 218 --------------------RKHPQQELV---------------QVNTKNILFIVGGAFE 242

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            + E  +        G G   +G +++ L  +    V  K+G                  
Sbjct: 243 SMGEIARARTNVRAVGFGAEHKGDEKEELRFLPEDLV--KFG------------------ 282

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR P+ V L+ L++     ILT+ +  +I QY+ L   + + L+FT+ ++
Sbjct: 283 ----LIPEFVGRLPLVVQLQDLDEEALVRILTEPQGAIIKQYQALFGFQNVNLEFTDAAL 338

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +A  A    +     GAR L+ V+E+ + D+ F         +  DAE + 
Sbjct: 339 REVAHRARERKT-----GARGLRAVLEKAMTDLLFELPMEGLTELRFDAENID 386


>gi|42520203|ref|NP_966118.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|61211556|sp|Q73I60|CLPX_WOLPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|42409941|gb|AAS14052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 425

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 171/428 (39%), Gaps = 92/428 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQKHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID ++   S   S  
Sbjct: 182 GIV--------------------------------------FIDEID-KITRKSEGTSIT 202

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  +   V     +   +   Q+                  V   +I 
Sbjct: 203 RDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFI---------------QVDTSNIL 247

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       LD+   I AR  G  +G   +  Q                           
Sbjct: 248 FICGGAFEGLDKI--IEARKKGTSVGFGADISQSKEQK---------------------- 283

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A H  +P D     L+PE  GR P+   L  L+  D   +LT+  + LI QYK L+ 
Sbjct: 284 KKNALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLA 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTV 412
              + L+F++++I A+A  A++  +     GAR L+ ++E +L DI +++ +   +  T+
Sbjct: 344 FSKVNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTI 398

Query: 413 VIDAEYVR 420
           VI  + V 
Sbjct: 399 VITKKMVE 406


>gi|254495063|ref|ZP_05107987.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
 gi|85819413|gb|EAQ40570.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp.
           MED152]
          Length = 412

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/429 (22%), Positives = 172/429 (40%), Gaps = 84/429 (19%)

Query: 2   KLTFNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNI 56
            L+ + +   P +I   LD+YIIGQ + KRA+A+A+ N ++R     +  D  E+   NI
Sbjct: 53  SLSKDLTLKKPLQIKEFLDQYIIGQDETKRAMAVAVYNHYKRLLQDKNTEDDVEIEKSNI 112

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +LVG TG GKT +++ +A++   PF  V+ T  T+ GYVG +VE I+  L+ VA   V +
Sbjct: 113 VLVGETGTGKTLVAKTIAKMLNVPFSIVDATVLTQAGYVGEDVESILSRLLQVADYDVEK 172

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           + R  V                                         EID ++A    + 
Sbjct: 173 AERGIV--------------------------------------FIDEID-KIARKGDNP 193

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           S      G       + +   K++           V        +    + I    V+  
Sbjct: 194 SITRDVSGEG-----VQQALLKLLEGS-------VVNVAPKGGRKHPEQKFI---EVNTK 238

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            I  +       +D+   I  R +   +G                   S +   ++ D++
Sbjct: 239 DILFIAGGAFSGIDKI--ISKRLNRQAVGFG----------------ASLEEDKLDEDNL 280

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           L          +   L+PEI GR PV  ++  L+    R ILT+ ++++I QY +L   +
Sbjct: 281 L--QYITPLDLKSFGLIPEIIGRLPVLSYMNPLDAKTLRAILTEPKNSIIKQYAKLFVMD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            +     E++++ + + AV        +GAR L+++ E +  D  F     +EK   +  
Sbjct: 339 DVNFTIDEEALNYIVEKAVEYK-----LGARGLRSLCEAIFTDAMFDLPSSEEKEFNVTK 393

Query: 417 EYVRLHIGD 425
           +Y    + +
Sbjct: 394 DYAEAKLSN 402


>gi|260590037|ref|ZP_05855950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|331084353|ref|ZP_08333457.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539549|gb|EEX20118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|330401617|gb|EGG81198.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 475

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 162/413 (39%), Gaps = 81/413 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ+ AK+ +++A+ N ++R     +   E+   N+L++GPTG GKT 
Sbjct: 123 PHKIKASLDEYVIGQEKAKKVMSVAVYNHYKRVFADMNDDIEIEKSNMLMIGPTGSGKTY 182

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +    +      
Sbjct: 183 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII------ 236

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 237 -----FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGMLKLLEGSEIEVP 276

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL                     
Sbjct: 277 VGANSKNAMVPLTTVNTKNILFICGGAFPDLEEIIKERL--------------------- 315

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                    + +  G     +        L+E  +V                       +
Sbjct: 316 --------NKTASIGFQADLKDKYDHDNTLLEKVTV--------------------DDIK 347

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L  LN+     IL + ++ ++ QY++L+  + + L+F + +++
Sbjct: 348 KFGMIPEFLGRLPIIFTLTGLNRDMLVEILKEPKNAILKQYQKLLALDEVKLEFEDGALE 407

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A+AD+A+  ++     GAR L+ ++E  + DI +    D     V+I  EY+ 
Sbjct: 408 AIADMALEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGEVIITKEYIE 455


>gi|331003244|ref|ZP_08326751.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412897|gb|EGG92277.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 465

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 162/416 (38%), Gaps = 82/416 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I   LD Y+IGQ  AKR +++A+ N ++R  L  D     +   NIL++GPTG GKT
Sbjct: 120 PHKIKEMLDEYVIGQDQAKRIISVAVYNHYKRIFLDKDKEGIRIEKSNILMIGPTGSGKT 179

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  +    V     
Sbjct: 180 YLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVERAECGIV----- 234

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  +D +       NT                  D+       ++          V
Sbjct: 235 ------FIDEIDKIAKKKNTNTR---------------DVSGESVQQELLKMLEGSKVEV 273

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
            +    +     M +     I       +P L           D + ++ +Q        
Sbjct: 274 PVGTNQKNVLAPMETVNTDNILFICGGAFPAL-----------DDIIKERLQ-------- 314

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                     +++  G     +G   +   L            IN D   F         
Sbjct: 315 ----------KNTSMGFNSDLKGKYDNDSDLYS--------KVINEDIRKF--------- 347

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               ++PE  GR PV   L  L+K  F+ IL + ++ ++ QYK L++ + + L F +D++
Sbjct: 348 ---GMIPEFIGRLPVVCTLSKLDKEAFKKILIEPKNAILKQYKRLLELDEVELSFDDDAM 404

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           + +A+ A+       D GAR L++++E  + DI +    D     V+I  EY+   
Sbjct: 405 EWIAEQAMK-----KDTGARALRSIIEEFMLDIMYETPKDKNIGKVIITREYLEHK 455


>gi|238483617|ref|XP_002373047.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357]
 gi|220701097|gb|EED57435.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357]
          Length = 553

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 172/445 (38%), Gaps = 64/445 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+ +   LD++++GQ  AK+ +++A+ N ++R Q      +E +      +      + 
Sbjct: 86  TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVE-----LLAKRARRE 140

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
           ++ R        PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV
Sbjct: 141 SVDRHPVE---VPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEV 197

Query: 123 REQAS-----------INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
            + A+              ++ +L  + G      T +V  K+ ++   +    +     
Sbjct: 198 DKIAAAKVSHGKDVGGEGVQQALLKIIEGT-----TVQVQAKQEKNAPRAGGTPN--TYP 250

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           ++S + N   P     G+    E+++      R   I       +  L +      + MD
Sbjct: 251 SNSPLGNSPYPPSNGGGMSQKGEVYN-----VRTDNILFIFSGAFVGLHK------VVMD 299

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-----GVSREGVQRDLLPLVEGSSVST 286
            + R SI   +        +     +  + N       G   E + +  LP    +S  +
Sbjct: 300 RISRGSIGFGQPVRTPSNSDERPGQSTTANNQPVPIVPGSEEEALYKKHLPFFTSASPES 359

Query: 287 KYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
             G    +   F    A  +  P DL     +PE+ GR PV   L +L +     ILT+ 
Sbjct: 360 PDG----EPTYF---NALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEP 412

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            ++L+ QY  L    GI L FT  ++  +A  A  + +     GAR L+T ME +L D  
Sbjct: 413 RNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAM 467

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDF 426
           +       K V++            
Sbjct: 468 YETPGSSVKFVLVTESVAARKEKPI 492


>gi|315226598|ref|ZP_07868386.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia
           denticolens DSM 10105]
 gi|315120730|gb|EFT83862.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia
           denticolens DSM 10105]
          Length = 424

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 178/431 (41%), Gaps = 106/431 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----------------QLPADLRD-E 50
            P  I   LD Y+IGQ +AK+A+++A+ N ++R                    +DL + E
Sbjct: 64  KPSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVE 123

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTG GKT ++  LAR+   PF  V+ T  TE GYVG +VE I++ L+  A
Sbjct: 124 ISKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 183

Query: 111 INIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              +  ++      DE+ + A  + E            TS TR+V  + ++   +     
Sbjct: 184 DGDISRAQQGIIYIDEIDKIARKSGEN-----------TSITRDVSGEGVQQALLKI--- 229

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            IE    S  +          +  +N S++                    +  L      
Sbjct: 230 -IEGTVASVPVKGSRKHEEQEMVQINTSDIL-------------FICGGAFVGLEDIIRH 275

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           RL                              R++G G   S +    D +  +      
Sbjct: 276 RL----------------------------GKRETGFGTDWSSQEKSSDEILSLVTPDDL 307

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           T++G                      LLPE  GR PV   + SL   D   ILT+  + L
Sbjct: 308 TEFG----------------------LLPEFIGRMPVLATMSSLTVDDLVSILTEPANAL 345

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + Q+ +++  +G+ L FT+ +++++A  +++  +     GAR L+++MER+LED  +   
Sbjct: 346 VKQFAKILAVDGVELVFTDQALESIAQRSLDRGT-----GARGLRSIMERILEDAMYQVP 400

Query: 406 DLQEKT-VVID 415
           D ++ + V +D
Sbjct: 401 DREDVSQVRVD 411


>gi|168042097|ref|XP_001773526.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675228|gb|EDQ61726.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 433

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/458 (21%), Positives = 174/458 (37%), Gaps = 113/458 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRA------------VAIALRNRWRRQQLP----------- 44
           +PREI   LD++++GQ+ AK+A            +++A+ N ++R               
Sbjct: 25  TPREISQALDKFVVGQEKAKKAFSLFPSFNSLAILSVAVYNHYKRIHYESLLKSNIRLTD 84

Query: 45  -----------ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
                       +   EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ G
Sbjct: 85  EGAGHSDMEDEENDGVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG 144

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           YVG +VE I+  L+  A   V  +++  V            +D                 
Sbjct: 145 YVGEDVESILYKLLMAAEFNVPAAQQGIVY-----------ID----------------- 176

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
                       +++     ++  N             L ++    + +  +K  R   +
Sbjct: 177 ------------EVDKITKKAENMNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 224

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
                            D +  D+  ++   G  F++    I  R   + IG        
Sbjct: 225 G----------------DHIQVDTKDILFICGGAFIELEKTIAERRQDSSIGFGA----- 263

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
              P+     V+    +  T  +L +   +  +S    L+PE  GRFPV V L +LN+  
Sbjct: 264 ---PVRANMRVNKLVNAAVTSSLLELVESSDLIS--YGLIPEFIGRFPVLVSLAALNEDQ 318

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              +LT+  + L  QYK++     + L +TE ++  +A  A+  N+     GAR L+++M
Sbjct: 319 LVQVLTEPRNALGKQYKKMFAMNNVKLHYTEGALRRIAQKAMIKNT-----GARGLRSIM 373

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           E +L D  +   D   +T           I     + D
Sbjct: 374 EALLTDSMYQVPDSVSET--------DEKIDAVVLDED 403


>gi|315650538|ref|ZP_07903604.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
 gi|315487193|gb|EFU77509.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium
           saburreum DSM 3986]
          Length = 463

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 172/419 (41%), Gaps = 88/419 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           P +I   LD Y+IGQ  AK+ +++A+ N ++R  L  D     +   NIL++GPTG GKT
Sbjct: 118 PHKIKEMLDEYVIGQDVAKKVISVAVYNHYKRIFLDKDKEGTRIEKSNILMIGPTGSGKT 177

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            + + LA+L   P    + T  TE GY+G ++E +I  L+  A N V  +    V     
Sbjct: 178 YLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVERAECGIV----- 232

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGG 184
              +E  +D +  K   +NTR+V  + ++   +   E   +++ V     ++        
Sbjct: 233 -FIDE--IDKI-AKKKNTNTRDVSGESVQQELLKLLEGSKVEVPVGTNQKNV-------- 280

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                                     L  M+TV+ D+I  +   
Sbjct: 281 ------------------------------------------LAPMETVNTDNILFICGG 298

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               LD+  K         +G + E   +        S V+ +                 
Sbjct: 299 AFPALDDIIK-ERLQKNTSVGFNSELKDKYDNETDLYSKVTNEDI--------------- 342

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              R   ++PE  GR PV   L  L+K  F+ IL + ++ ++ QYK L++ + + L F +
Sbjct: 343 ---RKFGMIPEFIGRLPVICTLSKLDKDAFKKILNEPKNAILKQYKRLLELDEVELVFDD 399

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           D+ D +A+ A+       D GAR L++++E  + DI +    D     V+I  +Y+   
Sbjct: 400 DATDYIAEQAMK-----KDTGARALRSIIEEFMLDIMYEIPKDKNIGRVIITRDYLEHK 453


>gi|225010438|ref|ZP_03700909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-3C]
 gi|225005267|gb|EEG43218.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-3C]
          Length = 410

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI   LD++IIGQ   K+ +++A+ N ++R  Q       E+   NI++VG TG GK
Sbjct: 61  KPIEIKDFLDQFIIGQDRTKKVLSVAVYNHYKRLLQQNTKDDVEIQKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   + ++ R  V    
Sbjct: 121 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDLEKAERGIV---- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D                             +I+     SD  +        
Sbjct: 177 -------FID-----------------------------EIDKIARKSDNPSITRDVSGE 200

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                L +L    + +   K  R                + I    V+ ++I  +     
Sbjct: 201 GVQQGLLKLLEGTVVNVPPKGGRKHPD-----------QKFI---EVNTENILFIAGGAF 246

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             +++  KI  R +   +G S       L                  D+   +       
Sbjct: 247 DGIEK--KISKRLNLQALGYSASKADEGL------------------DNENILQYITPKD 286

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PEI GR PV  H+  L+K   R ILT  ++ +I QY++L + + I L+  E++
Sbjct: 287 LKDFGLIPEIIGRLPVLTHMNPLDKKTLRAILTQPKNAIIKQYEKLFEMDHIALEINEEA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D L + A+        +GAR L+++ E V  D  FS    +EK   +D  Y    +
Sbjct: 347 LDFLVEKALEYK-----LGARGLRSLCESVFTDAMFSLPSSEEKEFKVDRAYAEKKL 398


>gi|292669385|ref|ZP_06602811.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
 gi|292649020|gb|EFF66992.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
          Length = 430

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 164/424 (38%), Gaps = 78/424 (18%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---ADLRDELMPKNILLVGPTGVG 65
           P  I   LD YII Q  AK+ +A+A+ N ++R +          E+   N++++GP+G G
Sbjct: 76  PHLIKEYLDSYIIKQDRAKKILAVAVYNHYKRMKYGYEKEGEETEIEKSNVIMLGPSGCG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A   V           
Sbjct: 136 KTALLSHLSKLLDVPFTVTDASSLTEAGFVGADVEVAVRNLYYAADKDV----------- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE  I+                            E D ++A  S   ++     G 
Sbjct: 185 --ERAEHGII-------------------------YLDEFD-KIARKSGANNSITADPGH 216

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L ++    +     +  R   +                  T+  D+  ++   G
Sbjct: 217 EGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILFIVG 260

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             F+   +K++++    G      G +              +   I  +    I      
Sbjct: 261 GAFVG-IEKVISKRLKKGNVSIGFGAE-------------VRGKDIEKEFDTLIHQVTPE 306

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 ++PEI GR PV   L++L++     ILT+  +  + QY++L+  +G+ L FTED
Sbjct: 307 DLMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDGVELVFTED 366

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIG 424
           ++ A+A  A+   +     GAR L+ ++E V+ D+ F    +   + V +  E +     
Sbjct: 367 ALRAVAKKAIERKT-----GARSLKGIIEEVMLDVMFDIPRETAPRRVTVTKECITEGAA 421

Query: 425 DFPS 428
               
Sbjct: 422 PIVE 425


>gi|317502016|ref|ZP_07960200.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896696|gb|EFV18783.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 497

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/422 (22%), Positives = 171/422 (40%), Gaps = 83/422 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 143 PHKIKARLDEYVVGQEKAKKAMAVAVYNHYKRVASDTMDDIEIEKSNMLMIGPTGSGKTY 202

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +      EQ  I
Sbjct: 203 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERA------EQGII 256

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVADTSSDISNFDIPGGASV 187
             +E  +D +  K  TSN R+V  + ++ G +   E  ++EV   ++  +          
Sbjct: 257 FIDE--IDKI-AKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVP------ 307

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                       + +   K I       +P+L     +RL                    
Sbjct: 308 ------------LTTVNTKNILFICAGAFPDLEDIIKERL-------------------- 335

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                     + +  G     +        ++   +V                       
Sbjct: 336 ---------TKKTSMGFNAELKDKYEHDEDILSKVTV--------------------EDL 366

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           R   ++PE  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + ++
Sbjct: 367 RKFGMIPEFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGAL 426

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDF 426
           + +A+ A+       D GAR L+ ++E  + DI +    D     V I  EY+    G  
Sbjct: 427 ETIAEKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYIEGTGGPV 481

Query: 427 PS 428
             
Sbjct: 482 IK 483


>gi|222622641|gb|EEE56773.1| hypothetical protein OsJ_06335 [Oryza sativa Japonica Group]
          Length = 479

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 170/432 (39%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------ADLRD 49
           +P+EI   LD+++IGQ+ AK+ +++A+ N ++R                           
Sbjct: 61  TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 120

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 121 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAA 180

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D                             +++ 
Sbjct: 181 ADFDVAAAQQGIVY-----------ID-----------------------------EVDK 200

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  N             L ++    + S  +K  R   +               D
Sbjct: 201 ITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRG--------------D 246

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              +   +I  +   G  F+D    I  R   + IG             V  + +++   
Sbjct: 247 NIQIDTKNILFI--CGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLL 304

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
             + +    IA G         L+PE  GRFP+ V L SL++     +LT  ++ L  QY
Sbjct: 305 E-SVESGDLIAYG---------LIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQY 354

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +L +   + L FTE ++  ++  A+  N+     GAR L++++E +L +  +   +++ 
Sbjct: 355 TKLFEMNDVKLHFTEKALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRT 409

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 410 GKDKIDAVVVDE 421


>gi|331088165|ref|ZP_08337085.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408821|gb|EGG88284.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 497

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/422 (22%), Positives = 171/422 (40%), Gaps = 83/422 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+A+A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 143 PHKIKARLDEYVVGQEKAKKAMAVAVYNHYKRVASDTMDDIEIEKSNMLMIGPTGSGKTY 202

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +      EQ  I
Sbjct: 203 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERA------EQGII 256

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-DIEVADTSSDISNFDIPGGASV 187
             +E  +D +  K  TSN R+V  + ++ G +   E  ++EV   ++  +          
Sbjct: 257 FIDE--IDKI-AKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVP------ 307

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
                       + +   K I       +P+L     +RL                    
Sbjct: 308 ------------LTTVNTKNILFICAGAFPDLEDIIKERL-------------------- 335

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                     + +  G     +        ++   +V                       
Sbjct: 336 ---------TKKASMGFNAELKDKYEHDEDILSKVTV--------------------EDL 366

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           R   ++PE  GR P+   LK L+K     IL +  + ++ QY++L+  + + L F + ++
Sbjct: 367 RKFGMIPEFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGAL 426

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDF 426
           + +A+ A+       D GAR L+ ++E  + DI +    D     V I  EY+    G  
Sbjct: 427 ETIAEKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYIEGTGGPV 481

Query: 427 PS 428
             
Sbjct: 482 IK 483


>gi|212532331|ref|XP_002146322.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC
           18224]
 gi|210071686|gb|EEA25775.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC
           18224]
          Length = 633

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/506 (21%), Positives = 187/506 (36%), Gaps = 116/506 (22%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRW---------------------RRQQLPA 45
            +PR +   LD++++GQ  AK+ +++A+ N +                     RR  + A
Sbjct: 90  LTPRMLKQYLDQFVVGQDRAKKILSVAVYNHYQRIMELQRQEEAAAEMMAQRERRAAMEA 149

Query: 46  D-LRDE-----------------------------------LMPKNILLVGPTGVGKTAI 69
             L DE                                   L   NILL+GP+GVGKT +
Sbjct: 150 HHLDDEFTGHQRTMNLEQPMQDTIESRLGGSSSFPDTSSTQLEKSNILLLGPSGVGKTLM 209

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVRE 124
           ++ LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R     DEV  
Sbjct: 210 AKTLARVLDVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEKAERGIICLDEV-- 267

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNFD 180
                  ++I  A V      +   V +  L+  E +  ++ ++    +S          
Sbjct: 268 -------DKIATARVSHGKDVSGEGVQQALLKIVEGTTVQVQVKPEKNTSRPAGGAPGSF 320

Query: 181 IPGGASVGILNLSELFSKVMGSG------RKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            PG       N     S            R   I       +  L +      I MD + 
Sbjct: 321 PPGATPGSAFNSPSTASGPPPQKGEIYNVRTDNILFIFSGAFVGLNK------IIMDRIS 374

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----- 289
           + S+   +              +  S      S +   +  +P++ GS     Y      
Sbjct: 375 KSSMGFGQPVR----------ASSISSGNSSSSHDASNQAPIPIIPGSEEEALYKKHLPF 424

Query: 290 ----SINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
               +  T     +      +S P+DL     +PE+ GR PV   L SL+ S    ILT+
Sbjct: 425 FTSATPPTSSEEPVYFNPLDLSTPSDLQKFGFIPELVGRIPVTTALSSLSHSLLLRILTE 484

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             ++L+ QY+ L    GI L FT  ++  +A  A+++ +     GAR L+T +E +L D 
Sbjct: 485 PRNSLVTQYETLFDLSGIKLSFTTPALHKIASNALSMGT-----GARALRTELETILSDA 539

Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDF 426
            F A     K V++  +         
Sbjct: 540 MFEAPGSSVKFVLVTEKVADRQEKPI 565


>gi|320332659|ref|YP_004169370.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           maricopensis DSM 21211]
 gi|319753948|gb|ADV65705.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           maricopensis DSM 21211]
          Length = 398

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 168/419 (40%), Gaps = 86/419 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L+   SPREI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPT
Sbjct: 52  LSELPSPREIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP---DANLGKSNILLIGPT 108

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++  LA +   PF   + T  TE GYVG +VE +I  L+  A   V  + R  +
Sbjct: 109 GTGKTLLASSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAAEYDVEAAERGII 168

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I         TS TR+V  + ++   +    I+  VA            
Sbjct: 169 Y-------IDEIDKIARKSEGTSITRDVSGEGVQQALLKI--IEGTVAQVPPQGG----- 214

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+                  V+  +I  + 
Sbjct: 215 -------------------------RKHPQQELV---------------QVNTKNILFIV 234

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 + +  +        G G   +G +++ L  +    V  K+G             
Sbjct: 235 GGAFDGIADIGRSRTNIRSVGFGAEHKGDEKEELRFMPEDLV--KFG------------- 279

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE  GR P+ V L+ L +     ILT+ +  ++ QY+ L   + + L+F
Sbjct: 280 ---------LIPEFVGRLPLVVQLQDLGEDALVRILTEPQGAIVRQYQALFGFQDVDLNF 330

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           TE+++  +A  A    +     GAR L+ V+E+ + D+ F       + +  DAE++  
Sbjct: 331 TEEALQEVARRAKARGT-----GARGLRAVLEKSMTDLLFELPAEGLRELRFDAEHIDD 384


>gi|15806971|ref|NP_295696.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus
           radiodurans R1]
 gi|21263490|sp|Q9RSZ6|CLPX_DEIRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|6459761|gb|AAF11525.1|AE002035_8 ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus
           radiodurans R1]
          Length = 403

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/417 (23%), Positives = 169/417 (40%), Gaps = 86/417 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + LD ++IGQ +AK+A+A+A+ + + R   P      L   NILL+GPTG GKT +
Sbjct: 64  KEIKAYLDEFVIGQDEAKKALAVAVVSHYHRLSNP---DAGLQKSNILLIGPTGTGKTLL 120

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           ++ LA +   PF   + T  TE GYVG +VE +I  L+  A   V  + R  +       
Sbjct: 121 AQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAAEYDVAAAERGIIYV----- 175

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
             + I         TS TR+V  + ++   +    I+  VA                   
Sbjct: 176 --DEIDKIARKSEGTSITRDVSGEGVQQALLKI--IEGTVAQVPPQGG------------ 219

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
                              +   Q+            L+ +DT    +I  +       +
Sbjct: 220 ------------------RKHPQQE------------LVQVDT---RNILFIVGGAFESM 246

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
            E  +        G G   +G +++ +  +    V  K+G                    
Sbjct: 247 SEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLV--KFG-------------------- 284

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GR P+ V L+ L++     ILT+ +  +I QY+ L   +G+ L F+E+++  
Sbjct: 285 --LIPEFVGRLPLVVQLQDLDEDALIRILTEPQGAIIKQYQALFGFQGVDLTFSEEALQE 342

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +A  A    +     GAR L+ V+E+ + D+ F       K +  +AEY+   +   
Sbjct: 343 VAHRAKERKT-----GARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYIDDPLKAL 394


>gi|167761340|ref|ZP_02433467.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704]
 gi|167661006|gb|EDS05136.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704]
          Length = 475

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 168/420 (40%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y++GQ+ AK+A+++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 125 PHKIKAKLDDYVVGQEYAKKAMSVAVYNHYKRVATDTMDDIEIEKSNMLMIGPTGSGKTY 184

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N + ++      EQ  I
Sbjct: 185 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAENDIEKA------EQGII 238

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             +E  +D +  K  +S                    D+        +          V 
Sbjct: 239 FIDE--IDKIAKKKNSSQR------------------DVSGESVQQGMLKLLEGSDVEVP 278

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P+L     +RL                     
Sbjct: 279 VGANSKNAMVPLTTVNTKNILFICGGAFPDLEGIIKERL--------------------- 317

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                    + S  G G   +        ++E          + T+ +           R
Sbjct: 318 --------TKQSSIGFGADLKDKYDHDKTILE---------KVTTEDL-----------R 349

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ +N+     IL + ++ ++ QY++L+  + + L F + +++
Sbjct: 350 NFGMIPEFLGRLPIVFTLQGMNEHMLIKILKEPKNAILKQYQKLLALDEVNLLFDDGALE 409

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+       D GAR L+ ++E  + DI +    D     V I  EY+    G   
Sbjct: 410 AIAKKAMK-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITREYIEGTGGPLI 464


>gi|313905069|ref|ZP_07838439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
 gi|313470139|gb|EFR65471.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
          Length = 504

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 156/417 (37%), Gaps = 83/417 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGK 66
           P  I ++LD Y+IGQ  AK+ +A+ + N ++R   +   D   E+   N+L++GPTG GK
Sbjct: 152 PHMIKAKLDEYVIGQDRAKKIMAVGVYNHYKRILSEPAKDDDVEIEKSNMLMIGPTGSGK 211

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +    +    
Sbjct: 212 TYLVKTLARLLDVPLAMTDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEHGII---- 267

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                   +D +       NT +                D+        +          
Sbjct: 268 -------FIDEIDKIAKKKNTNQR---------------DVSGEAVQQGMLKLLEGSEVE 305

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V +   ++     + +   K I       +P+L     +RL                   
Sbjct: 306 VPVGATNKNAMVPLETVNTKNILFICGGAFPDLENVIKERL------------------- 346

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                               S  G Q +L    +G                 +       
Sbjct: 347 -----------------TKTSTMGFQSELKDRFDG-------------DKDILQQVRMED 376

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            R   ++PE  GR P+   L+SL +     IL + ++ ++ QY++LM+ + + L F +++
Sbjct: 377 LRQFGMIPEFLGRLPIVFALESLTEDMLVEILREPKNAILKQYRKLMEIDEVKLTFEDEA 436

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L+ ++E  + DI +    D     V++    V   
Sbjct: 437 LHAIAAKALERET-----GARALRAIIEDFMLDIMYEVPKDKNIGEVIVTRALVEHK 488


>gi|58584809|ref|YP_198382.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|81311625|sp|Q5GS84|CLPX_WOLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58419125|gb|AAW71140.1| ATP-dependent protease Clp, ATPase subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 426

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 171/430 (39%), Gaps = 93/430 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I   L ++++GQ+ A+  +++A+ N  +   Q  A    E+   N++L+GPTG GK
Sbjct: 70  KPEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMAQFNAISDVEIEKSNVMLIGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R  V    
Sbjct: 130 TLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVAKAQRGIV---- 185

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I        +TS TR+V  + ++   +   E  +                   
Sbjct: 186 ---FIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGG----------- 231

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V  ++I  +     
Sbjct: 232 ---------------------RKHPQQEFI---------------QVDTNNILFICGGAF 255

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             L++   I AR  G  +G   +  Q                                H 
Sbjct: 256 EGLNKI--IEARKKGTSVGFGADISQSKEQK----------------------KKNTLHD 291

Query: 307 SRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            +P D     L+PE  GR P+   L  L+  D   +L +  + LI QYK L+    + L+
Sbjct: 292 VQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLVHVLIEPRNALIKQYKALLAFSKVNLE 351

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYV 419
           F++++I A+A+ A++  +     GAR L+ ++E +L D+ ++A +   +  T+VI  E V
Sbjct: 352 FSDEAISAIAEKAMSYKT-----GARMLRAILESLLLDVMYTAGNGGFEGSTIVITKEMV 406

Query: 420 RLHIGDFPSE 429
              +G     
Sbjct: 407 E--LGKAVIN 414


>gi|313895439|ref|ZP_07828996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320530805|ref|ZP_08031845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
 gi|312976334|gb|EFR41792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|320136964|gb|EFW28906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
          Length = 433

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 168/425 (39%), Gaps = 91/425 (21%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------ADLRDELMPKNILLVGPT 62
           P  I   LD YII Q  AK+ +A+A+ N ++R +             E+   N++++GP+
Sbjct: 76  PHLIKDYLDTYIINQDHAKKILAVAVYNHYKRMKYGYEAAKEEQESTEIEKSNVIMLGPS 135

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKTA+   L++L   PF   + +  TE G+VG +VE  +R+L   A   +        
Sbjct: 136 GCGKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAADKDI-------- 187

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                  AE  I+                            E D ++A  S   ++    
Sbjct: 188 -----EKAEHGII-------------------------YLDEFD-KIARKSGANNSITAD 216

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G       L ++    +     +  R   +                  T+  D+  ++ 
Sbjct: 217 PGHEGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILF 260

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
             G  F+   +KI+A+           G +      V G     ++ ++           
Sbjct: 261 IVGGAFVG-IEKIIAKRLRKNSAAIGFGAE------VRGKETEKEFDTL----------- 302

Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
             H   P DL     +PEI GR PV   L++L++     ILT+  +  + QY++L+  +G
Sbjct: 303 -IHQVSPEDLMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDG 361

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + L FTED++ A+A  A+   +     GAR L+ ++E V+ D+ F    +   + V +  
Sbjct: 362 VELVFTEDALRAVAKKAIARKT-----GARSLKGIIEEVMLDVMFDIPRETAPRRVTVTK 416

Query: 417 EYVRL 421
           E +  
Sbjct: 417 ECITD 421


>gi|160902924|ref|YP_001568505.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95]
 gi|160360568|gb|ABX32182.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Petrotoga
           mobilis SJ95]
          Length = 409

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/421 (24%), Positives = 173/421 (41%), Gaps = 87/421 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I SELD+Y+IGQ+ AK+ +++A+ N ++R     ++ D EL   N+LL+GPTG GK
Sbjct: 60  TPRQIKSELDKYVIGQETAKKIISVAVYNHYKRIYSSKNINDVELDKSNVLLIGPTGTGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I++ LAR+   PF   + T  TE GYVG +VE +I  L+      V++          
Sbjct: 120 TLIAQTLARILDVPFAIADATTLTEAGYVGEDVENVILRLLQACDYDVKK---------- 169

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID +++  S + S      G  
Sbjct: 170 ---AEKGII-------------------------YIDEID-KISRKSPNPSITRDVSGEG 200

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   +     +   +   Q+             I +DT     I  +     
Sbjct: 201 VQQALLKIVEGTLANVPPQGGRKHPYQE------------FIQIDTSK---ILFIAGGAF 245

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS---TKYGSINTDHILFIASGA 303
             L +  K   +DS  G G   +   +     V  + V     KYG I      F     
Sbjct: 246 DGLTDIIKHRVKDSSLGFGADIKSNNKQRDGEVLKNIVQDDLIKYGLIPEFVGRFPVVAT 305

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
            +                       L++ D   I  + ++ L  QY+++++ EGI L+ T
Sbjct: 306 LN----------------------DLDEEDLIKIAMEPKNALFKQYQKMLEIEGIKLEIT 343

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVIDAEYVRL 421
            +++  +   A+   +     GAR L+T+ E ++ D+ + A +++ K   +VID E V  
Sbjct: 344 AEAMKEICSQALKRGT-----GARALKTIFEEIMLDVMYEAPEIKNKINKIVIDEEVVTK 398

Query: 422 H 422
            
Sbjct: 399 K 399


>gi|225569252|ref|ZP_03778277.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM
           15053]
 gi|225162051|gb|EEG74670.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM
           15053]
          Length = 479

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 159/420 (37%), Gaps = 81/420 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  I + LD Y++GQ+ AK+ +++ + N ++R         E+   N+L++GPTG GKT 
Sbjct: 129 PHRIKASLDEYVVGQEYAKKVMSVGVYNHYKRVATDTMDDIEIEKSNMLMIGPTGSGKTY 188

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++ +  +      
Sbjct: 189 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQGII------ 242

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                 +D +       NT +                D+        +          V 
Sbjct: 243 -----FIDEIDKIAKKKNTSQR---------------DVSGESVQQGMLKLLEGSDVEVP 282

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   + I       +P+L     +RL                     
Sbjct: 283 VGANSKNAMVPLTTVNTRNILFICGGAFPDLEGIIKERL--------------------- 321

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                    + S  G G   +        ++E  +V                       R
Sbjct: 322 --------TKQSSIGFGADLKDKYDHDKTILEKVTV--------------------EDLR 353

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GR P+   L+ L++     IL + ++ ++ QY++L+  + + LDF E ++ 
Sbjct: 354 NFGMIPEFIGRLPIIFTLRGLDQDMLVKILKEPKNAILKQYQKLLALDEVKLDFDEGALQ 413

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFP 427
           A+A  A+       D GAR L+ ++E  + DI +    D     V I  EY+    G   
Sbjct: 414 AIAGKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITKEYIEGTGGPVI 468


>gi|330840087|ref|YP_004414667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|329747851|gb|AEC01208.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 430

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 168/426 (39%), Gaps = 93/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P  I + LD YII Q  AK+ +++A+ N ++R +      D  ++   N++++GP+G G
Sbjct: 76  KPHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCG 135

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KTA+   L+RL   PF   + +  TE G+VG +VE  +R+L   A             E+
Sbjct: 136 KTALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA-------------EK 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE  I+                            E D ++A  S   ++     G 
Sbjct: 183 DIEKAENGII-------------------------YLDEFD-KIARKSGANNSITADPGH 216

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L ++    +     +  R   +                  T+  D+  ++   G
Sbjct: 217 EGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILFIVG 260

Query: 246 IVFLDEFDKIVAR----DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             F+   D I  R     +G G G   EG ++D     +                     
Sbjct: 261 GAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDE-------------------- 300

Query: 302 GAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
              H  RP DL     +PEI GR PV   L++L++ D   ILT+ +   + QY++L+  +
Sbjct: 301 -LIHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMD 359

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVID 415
            + L F ED++ A+A  A+   +     GAR L+ ++E  + D+ F      EK  V I 
Sbjct: 360 NVELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEKRRVTIT 414

Query: 416 AEYVRL 421
              +  
Sbjct: 415 KGCLEE 420


>gi|197301584|ref|ZP_03166657.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC
           29176]
 gi|197299314|gb|EDY33841.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC
           29176]
          Length = 490

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 166/423 (39%), Gaps = 85/423 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ+ AK+ +A+A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 139 PHKIKARLDEYVVGQERAKKTMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGSGKTY 198

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  +      EQ  I
Sbjct: 199 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERA------EQGII 252

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             +E  +D +  K  +S                    D+        +          V 
Sbjct: 253 FIDE--IDKIAKKKTSSQR------------------DVSGESVQQGMLKLLEGSEVEVP 292

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           +   S+     + +   K I       +P           D++ + ++ +Q         
Sbjct: 293 VGANSKNAMVPLTTVNTKNILFICGGAFP-----------DIEEIIKERLQ--------- 332

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASGAFHV 306
                    + +  G     +        L+   +V    K+G I               
Sbjct: 333 ---------KKTSMGFNSELKDTYEHDENLLSKVTVEDLRKFGMI--------------- 368

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                  PE  GR P+   LK L+K     IL + ++ ++ QY++L+  + + LDF + +
Sbjct: 369 -------PEFLGRLPIIFTLKGLDKEMLVKILREPKNAILKQYQKLLALDEVKLDFDDSA 421

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGD 425
           ++A+A+ A+       D GAR L+ ++E  + DI +    D     V I   Y+    G 
Sbjct: 422 LEAIAEKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITRAYIEGTGGP 476

Query: 426 FPS 428
              
Sbjct: 477 VIR 479


>gi|38046595|gb|AAR09162.1| ATP-dependent hslVU protease [Mannheimia ruminalis]
          Length = 186

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/186 (53%), Positives = 135/186 (72%)

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
            DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+D
Sbjct: 1   IDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSD 60

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           LLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A
Sbjct: 61  LLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIA 120

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           + A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D
Sbjct: 121 ESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENED 180

Query: 432 MYHFIL 437
           +  FIL
Sbjct: 181 LSRFIL 186


>gi|260887443|ref|ZP_05898706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|260862806|gb|EEX77306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 431

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 168/426 (39%), Gaps = 93/426 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P  I + LD YII Q  AK+ +++A+ N ++R +      D  ++   N++++GP+G G
Sbjct: 77  KPHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCG 136

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KTA+   L+RL   PF   + +  TE G+VG +VE  +R+L   A             E+
Sbjct: 137 KTALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA-------------EK 183

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE  I+                            E D ++A  S   ++     G 
Sbjct: 184 DIEKAENGII-------------------------YLDEFD-KIARKSGANNSITADPGH 217

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 L ++    +     +  R   +                  T+  D+  ++   G
Sbjct: 218 EGVQQALLKMLEGSVVEFTARGQRKHPEAP----------------TIKVDTKNILFIVG 261

Query: 246 IVFLDEFDKIVAR----DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301
             F+   D I  R     +G G G   EG ++D     +                     
Sbjct: 262 GAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDE-------------------- 301

Query: 302 GAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
              H  RP DL     +PEI GR PV   L++L++ D   ILT+ +   + QY++L+  +
Sbjct: 302 -LIHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMD 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVID 415
            + L F ED++ A+A  A+   +     GAR L+ ++E  + D+ F      EK  V I 
Sbjct: 361 NVELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEKRRVTIT 415

Query: 416 AEYVRL 421
              +  
Sbjct: 416 KGCLEE 421


>gi|38018230|gb|AAR08192.1| ATP-dependent hslVU protease [Mannheimia ruminalis]
          Length = 186

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/186 (53%), Positives = 135/186 (72%)

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
            DKI  +   +G  VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+D
Sbjct: 1   IDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSD 60

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           LLPE+QGR P+RV LKSL K DF  ILT+  ++L LQY+ELMKTEG+ ++FT++ I  +A
Sbjct: 61  LLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIA 120

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
           + A  +N    +IGARRL TV+ER+++ ISF AS+ + + ++ID  YV   + D     D
Sbjct: 121 ESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDESYVSEALNDVVENED 180

Query: 432 MYHFIL 437
           +  FIL
Sbjct: 181 LSRFIL 186


>gi|317473075|ref|ZP_07932374.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
 gi|316899413|gb|EFV21428.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA]
          Length = 339

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 161/408 (39%), Gaps = 81/408 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L+VGPTG GKT + + LAR
Sbjct: 2   LDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKTYLVKTLAR 61

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           L   P    + T  TE GY+G +VE ++  L+  A N V E+    +            +
Sbjct: 62  LLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEAEHGII-----------FI 110

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D +       NT                  D+        +          V +   S+ 
Sbjct: 111 DEIDKIAKKQNTNSR---------------DVSGESVQQGLLKLLEGAEVEVPVGATSKN 155

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
               M +   K I       +P+L      RL+   ++          +     D+FDK 
Sbjct: 156 AMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSI---------GFHADLKDKFDK- 205

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
                             ++L  V                            R   ++PE
Sbjct: 206 ----------------DENILSRVT-----------------------VDDLREYGMIPE 226

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR P+   L+ L+K     IL + ++ ++ QY++L++ + + L F E +++A+A+ A+
Sbjct: 227 FLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKLLELDEVELIFDESALEAIAEKAL 286

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
              +     GAR L+ ++E+ + DI F    D     V+I+ +Y+  H
Sbjct: 287 EKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGRVIINRDYILNH 329


>gi|254431561|ref|ZP_05045264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp.
           PCC 7001]
 gi|197626014|gb|EDY38573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp.
           PCC 7001]
          Length = 453

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 162/428 (37%), Gaps = 91/428 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI + LDR ++GQ++AK+++++A+ N ++R     D + E       L   NILL+G
Sbjct: 85  KPQEIKAFLDRQVVGQEEAKKSLSVAVYNHYKRLAWQGDGKGETDETATRLHKSNILLIG 144

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 145 PTGCGKTLLAQTLAEILEVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVELAQRG 204

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  S + S   
Sbjct: 205 II--------------------------------------YIDEID-KIARKSENPSITR 225

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G  V    L  L         +   +   Q C                 +    I  
Sbjct: 226 DVSGEGVQQALLKLLEGTTANVPPQGGRKHPYQDCI---------------QIDTSQILF 270

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
           +     V LD  D +  R   N IG              E                  +A
Sbjct: 271 ICGGAFVGLD--DVVQKRMGRNAIGFINPEGNNRPRSARER-----------------LA 311

Query: 301 SGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +       P D     L+PE  GR PV   L+ L+      ILT+    L+ Q++ L+  
Sbjct: 312 ADVLRHLEPDDLVKYGLIPEFIGRLPVTAVLEPLDIHALEAILTEPRDALVKQFQTLLSM 371

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L F + +I+A+A  A    +     GAR L+ ++E ++ ++ +     +  KT  +
Sbjct: 372 DDVQLHFEQGAIEAIAAEAHRRKT-----GARALRGILEELMLELMYDLPSRRNVKTFTV 426

Query: 415 DAEYVRLH 422
             E V   
Sbjct: 427 TQELVEQR 434


>gi|255950672|ref|XP_002566103.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593120|emb|CAP99496.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 579

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 108/494 (21%), Positives = 178/494 (36%), Gaps = 132/494 (26%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW------------------RRQQL------ 43
           +P+ +   LD+Y++GQ  AK+ +++A+ N +                  +RQ+       
Sbjct: 84  TPKVLKQYLDQYVVGQDRAKKVLSVAVYNHYQRVQELVRREEEAAEALAKRQRREALETH 143

Query: 44  ------------------------PADLRD----ELMPKNILLVGPTGVGKTAISRRLAR 75
                                    AD  D    +L   NILL+GP+GVGKT +++ LAR
Sbjct: 144 HLDGVQKTTSVPQTPRSRPNTPLEQADFADTSPLQLEKSNILLLGPSGVGKTLMAKTLAR 203

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINA 130
           +   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV        
Sbjct: 204 VLSVPFSISDCTVFTQAGYIGEDAEVCVHRLLAAADYNVEQAERGIIVLDEV-------- 255

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V          V +  L+  E +  ++  +          +++         
Sbjct: 256 -DKIAAAKVSHGKDVGGEGVQQALLKIIEGTTVQVQAKPEKNPRATKVYNV--------- 305

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
                        R   I       +  L +        MD + R SI   +        
Sbjct: 306 -------------RTDNILFVFSGAFVGLHKA------IMDRISRGSIGFGQPVRPA--- 343

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS--- 307
                    + +    S        LP++ GS     Y      H+ F +S +   S   
Sbjct: 344 --------SNTSDFPGSPNISTNQPLPILPGSEEEALYK----KHLPFFSSASPAGSGAE 391

Query: 308 ----------RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P+DL     +PE+ GR PV   L +L++     ILT+  ++L+ QY  L
Sbjct: 392 PTYFNALDLLTPSDLQSYGFIPELIGRIPVTAALSALSQPLLMRILTEPRNSLLAQYTTL 451

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
               GI L FT  ++  +A  A  + +     GAR L+T ME +L D  F A     K V
Sbjct: 452 FSLSGIELRFTTPALHKVAGNAFAMGT-----GARALRTEMETILSDAMFEAPGSSVKFV 506

Query: 413 VIDAEYVRLHIGDF 426
           ++            
Sbjct: 507 LVTEAVADRKEQPI 520


>gi|283457918|ref|YP_003362520.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa
           DY-18]
 gi|283133935|dbj|BAI64700.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa
           DY-18]
          Length = 455

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 177/426 (41%), Gaps = 95/426 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +PREI S L+ Y+IGQ  AKR +A+A+ N ++R                 A  + EL   
Sbjct: 71  TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT ++  LA+    PF  V+ T  TE GYVG +VE I+  L++ A   +
Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            +++R        I  +E    A  G    S TR+V  + ++   +    I+  VA    
Sbjct: 191 AKAQR------GIIYIDEIDKIARKGGENLSITRDVSGEGVQQALLKI--IEGTVATVPP 242

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +                                             +  +   I++DT  
Sbjct: 243 EGG------------------------------------------RKHPAHANIEIDT-- 258

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  +       +D  D+I AR    GIG   E           G SV      I   
Sbjct: 259 -SNILFIVAGAFDNID--DRIAARVGAGGIGFGAE----------LGGSVKNPLDQI--- 302

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE+ GR PV   L  LN+ +   +LT+ ++ L+ QY+ L  
Sbjct: 303 --------MPEDLAHYGIIPELIGRLPVISTLNELNEEELARVLTEPKNALLKQYRHLFA 354

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L   + +I A+A +A    +     GAR L+++ME++L+ I F   D  +  ++V
Sbjct: 355 LDGVELIIDDAAIAAIARLAAERGT-----GARGLRSMMEQILQPIMFDIPDRTDVVSIV 409

Query: 414 IDAEYV 419
           I  + V
Sbjct: 410 IGEDTV 415


>gi|160881660|ref|YP_001560628.1| ATP-dependent protease ATP-binding subunit [Clostridium
           phytofermentans ISDg]
 gi|160430326|gb|ABX43889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           phytofermentans ISDg]
          Length = 482

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/427 (21%), Positives = 167/427 (39%), Gaps = 87/427 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM------PKNILLVGPT 62
           P  I + LD ++IGQ  AK+ +++A+ N ++R     D    LM        N+L++GPT
Sbjct: 122 PHIIKASLDEFVIGQNHAKKVISVAVYNHYKRVAKLKDTEHPLMEDVDIEKSNMLMIGPT 181

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT + + LARL   P    + T  TE GY+G +VE ++  L+  A N V ++ +  V
Sbjct: 182 GSGKTYLVKTLARLLNVPLAITDATSLTEAGYIGDDVESVLSKLLAAADNDVEKAEQGIV 241

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                I+  ++I           +   V +  L+  E SD E+ +     ++ +      
Sbjct: 242 ----FIDEIDKIAKKKSTNNRDVSGESVQQGLLKLLEGSDVEVPVGATSKNAMVP----- 292

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                                          + T++  +I  + 
Sbjct: 293 -----------------------------------------------LTTINTKNILFIC 305

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+  K    +  + IG S +   +                    D    +   
Sbjct: 306 GGAFPDLDKIIK-ARLNKQSSIGFSADLKDKYD------------------DDPNLLQKV 346

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           A    R   ++PE  GR PV   L+SL K     IL + ++ ++ QYK+L+  + + L+F
Sbjct: 347 AVDDLREFGMIPEFLGRLPVVYSLESLTKDMLTKILIEPKNAILKQYKKLLALDEVDLNF 406

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            + +++A+A+ A+   +     GAR L+ ++E  + DI +    D     V I  +Y+  
Sbjct: 407 DQGALEAIAEKAMEKKT-----GARALRAIIEEFMLDIMYEIPKDDSIGRVTITRDYIEK 461

Query: 422 HIGDFPS 428
                  
Sbjct: 462 KGAPMIE 468


>gi|255326614|ref|ZP_05367691.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           mucilaginosa ATCC 25296]
 gi|255296354|gb|EET75694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia
           mucilaginosa ATCC 25296]
          Length = 455

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 176/426 (41%), Gaps = 95/426 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
           +PREI S L+ Y+IGQ  AKR +A+A+ N ++R                 A  + EL   
Sbjct: 71  TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT ++  LA+    PF  V+ T  TE GYVG +VE I+  L++ A   +
Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
            +++R        I  +E    A  G    S TR+V  + ++   +    I+  VA    
Sbjct: 191 AKAQR------GIIYIDEIDKIARKGGENLSITRDVSGEGVQQALLKI--IEGTVATVPP 242

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +                                             +  +   I++DT  
Sbjct: 243 EGG------------------------------------------RKHPAHANIEIDT-- 258

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  +       +D  D+I AR    GIG   E           G SV      I   
Sbjct: 259 -SNILFIVAGAFDNID--DRIAARVGAGGIGFGAE----------LGGSVKNPLDQI--- 302

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE+ GR PV   L  LN+ +   +LT+ ++ L+ QY+ L  
Sbjct: 303 --------MPEDLAHYGIIPELIGRLPVISTLSELNEKELARVLTEPKNALLKQYRHLFA 354

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            +G+ L   + +I A+A +A    +     GAR L+ +ME++L+ I F   D  +  ++V
Sbjct: 355 LDGVDLVLDDAAIAAIARLAAERGT-----GARGLRAMMEQILQPIMFDIPDRTDVVSIV 409

Query: 414 IDAEYV 419
           I  + V
Sbjct: 410 IGEDTV 415


>gi|307706170|ref|ZP_07642988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK321]
 gi|307618430|gb|EFN97579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           mitis SK321]
          Length = 397

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 162/423 (38%), Gaps = 89/423 (21%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 49  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 108

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   +     E GYVG +VE I+  L+  A   +  + 
Sbjct: 109 IGPTGSGKTFLAQTLAKSLNVPFAIADA----EAGYVGEDVENILLKLLQAADFNIERAE 164

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 165 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 212

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 213 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVI 254

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE       +S     +  E +Q+                         
Sbjct: 255 GFGQNNKA--IDE-------NSSYMQEIISEDIQK------------------------- 280

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + +
Sbjct: 281 -----------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDV 329

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E
Sbjct: 330 ELEFDDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKE 384

Query: 418 YVR 420
            V 
Sbjct: 385 AVD 387


>gi|281414009|ref|ZP_06245751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus
           luteus NCTC 2665]
          Length = 358

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 169/416 (40%), Gaps = 96/416 (23%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLP----ADLRD-----------ELMPKNILLVGPTGVG 65
           IGQ+ AKR++A+A+ N ++R + P     DL D           E+   NIL+VGPTG G
Sbjct: 2   IGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVGKSNILMVGPTGSG 61

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V++         
Sbjct: 62  KTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAADYDVKK--------- 112

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               AE+ I+                            EID +++  S + S      G 
Sbjct: 113 ----AEQGII-------------------------YIDEID-KISRKSENPSITRDVSGE 142

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+                  +   ++  +    
Sbjct: 143 GVQQALLKILEGTVASVPPQGGRKHPHQEFL---------------QIDTSNVLFIVAGA 187

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              LDE   I +R    GIG          L  +    V+  Y  +  + +L        
Sbjct: 188 FAGLDEI--IGSRAGRKGIGFG------APLNHLGAGDVT--YADVRPEDLLKF------ 231

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR PV   ++ L       +LT+ ++ L+ QY+++   +G+ L+F +D
Sbjct: 232 -----GLIPEFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQD 286

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++DA+   A    +     GAR L+++ME VL+ + F      +  TVVI  + VR
Sbjct: 287 ALDAVVAQAEARGT-----GARGLRSIMENVLKPVMFELPSRSDVGTVVISGDVVR 337


>gi|302656403|ref|XP_003019955.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517]
 gi|291183732|gb|EFE39331.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517]
          Length = 603

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/474 (21%), Positives = 181/474 (38%), Gaps = 81/474 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +P+ +   LD +++GQ  AKR +++A+ N ++R Q      +E                 
Sbjct: 88  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147

Query: 51  ---------------------------------LMPKNILLVGPTGVGKTAISRRLARLA 77
                                            L   NILL+GP+GVGKT +++ LAR+ 
Sbjct: 148 PVEADYTSFRPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMAKTLARVL 207

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++  ++I  A
Sbjct: 208 SVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CLDEIDKIATA 263

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
            V      +   V +  L+  E +  +I  +    +S  S             + S    
Sbjct: 264 KVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSPGGSGSSGGTSYNSTSGPSG 323

Query: 198 KVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           K    + R   I       +  L +      + MD + R SI   +          D   
Sbjct: 324 KAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSFQN-DSTQ 376

Query: 257 ARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL- 312
            +++       G   E + +  LP    +   T   + + + + F       +  P+DL 
Sbjct: 377 TKNNAPIPILPGSHEEALYKKYLPFFTPTQTPT---APDEEPVYF---NPLDLVTPSDLQ 430

Query: 313 ----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
               +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L FT  ++ 
Sbjct: 431 AYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFTTAALH 490

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +A  A  +++     GAR L+T ME +L D  F A     K V++        
Sbjct: 491 KVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAARK 539


>gi|71066497|ref|YP_265224.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
 gi|123647822|sp|Q4FQB8|CLPX_PSYA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71039482|gb|AAZ19790.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           arcticus 273-4]
          Length = 424

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 184/434 (42%), Gaps = 102/434 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRDELMP 53
           +P+E+ ++LD Y+IGQ  AK+A+A+A+ N ++R ++               AD   EL  
Sbjct: 66  TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQTLANDSKKAKIGAADAMVELAK 125

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  +   
Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYD 185

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V ++ +  +         + I          S TR+V  + ++   +  K I+  VA   
Sbjct: 186 VSKAEQGIIY-------IDEIDKISKKGDNPSITRDVSGEGVQQALL--KLIEGTVAAIP 236

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                                              +   Q+            LI +DT 
Sbjct: 237 PHGG------------------------------RKHPQQE------------LIQVDT- 253

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I ++       LD+   I  R    GIG + +                     +++
Sbjct: 254 --SNILIIVGGAFAGLDKV--IQQRTEKTGIGFNAD---------------------VSS 288

Query: 294 DHILFIASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                 +S       P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ Q
Sbjct: 289 KDDSRRSSELLQQVEPEDLIKFGLIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQ 348

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK L   EG  + FT++++DA+A  A+   +     GAR L++++E  L +  +    ++
Sbjct: 349 YKYLFDMEGADITFTKEALDAIAKKAMARKT-----GARGLRSIVENALLETMYELPSMK 403

Query: 409 E-KTVVIDAEYVRL 421
             KTV++D + +  
Sbjct: 404 NAKTVLVDEQVINE 417


>gi|325955074|ref|YP_004238734.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922]
 gi|323437692|gb|ADX68156.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922]
          Length = 387

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/407 (25%), Positives = 175/407 (42%), Gaps = 82/407 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SPREI + LD Y+IGQ  AK+ +++A+ N ++R    + + D E+   N++LVG TG GK
Sbjct: 59  SPREIKNFLDEYVIGQDQAKKILSVAVYNHYKRVLNESSVGDVEIDKSNVILVGETGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +A+L   PF  V+ T  TE GYVG +VE I+  L+  A   V            
Sbjct: 119 TLLAKTIAKLLNVPFAIVDATVLTEAGYVGEDVESILSRLLQAADYNV------------ 166

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
              AE+ I+                            EID ++A  S + S      G  
Sbjct: 167 -ELAEKGIV-------------------------FIDEID-KIARKSDNPSITRDVSGEG 199

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  L   V+    K   +                + +    V+   I  +     
Sbjct: 200 VQQAMLKILEGTVVNVPPKGGRKHP------------DQKFV---EVNTKDILFIAGGAF 244

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
             ++    I  R + + IG  ++  +++   L+E  +         TD   F        
Sbjct: 245 SGIE--RHIANRLNKHVIGFKKDETKKETEHLLEEVNA--------TDLKNF-------- 286

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE+ GR P+   L+ L++   + ILT+ ++ LI QY++L + +G  L  TE++
Sbjct: 287 ----GIIPELIGRLPIITFLQPLDQEAMKRILTEPKNALIKQYEKLFELDGKELVVTENT 342

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +D +   A  L      +GAR L++V E +  DI +   +  +K +V
Sbjct: 343 LDYIVKRADELG-----LGARGLRSVTEEIFTDIMYDIVNQPDKVLV 384


>gi|255536256|ref|YP_003096627.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342452|gb|ACU08565.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Flavobacteriaceae bacterium 3519-10]
          Length = 393

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 178/415 (42%), Gaps = 83/415 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVG 65
            P+EI + LD+Y+IGQ  AK+ +++A+ N ++R     D     E+   NI+++G TG G
Sbjct: 59  KPKEIKTFLDQYVIGQDQAKKQLSVAVYNHYKRLLHAKDENREVEIEKSNIIMIGETGTG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ +  V   
Sbjct: 119 KTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDVEKAEKGIV--- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A  S + S      G 
Sbjct: 176 -----------------------------------FIDEID-KIARKSDNPSITRDVSGE 199

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   ++    +   +   QK                  V+  +I  +    
Sbjct: 200 GVQQGLLKLLEGSIVNVPPQGGRKHPDQKYI---------------QVNTQNILFIAGGA 244

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
              + E   I  R +   IG S E + +                  + D+IL   +    
Sbjct: 245 FDGIKEI--IERRLNKQAIGFSAEKLNKTE----------------DEDYILSQLNAI-- 284

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             R   L+PE+ GRFP+  +L+ L K     I+ + ++++I Q+ EL K +G+ L FT++
Sbjct: 285 DLRKFGLIPELLGRFPIVTYLEKLTKETMVRIMKEPKNSIINQFVELFKMDGVSLQFTDE 344

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           ++DA+ +  ++       +GAR L+   E+VLED  F      ++ VV++ + V+
Sbjct: 345 AVDAIVEETMDKG-----LGARGLRGTTEKVLEDYMFDI--EAQEEVVLNKDNVK 392


>gi|325283536|ref|YP_004256077.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           proteolyticus MRP]
 gi|324315345|gb|ADY26460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus
           proteolyticus MRP]
          Length = 404

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/403 (23%), Positives = 164/403 (40%), Gaps = 86/403 (21%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L+   SP+EI + LD ++IGQ +AK+A+A+A+ + ++R   P      L   NILL+GPT
Sbjct: 58  LSELPSPKEIKAFLDEFVIGQDEAKKALAVAVVSHYQRLSHP---DAGLQKSNILLIGPT 114

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LA +   PF   + T  TE GYVG +VE +I  L+  A    + + R  +
Sbjct: 115 GTGKTLLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQSADYDPQAAERGII 174

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I         TS TR+V  + ++   +    I+   A            
Sbjct: 175 YV-------DEIDKIARKSEGTSITRDVSGEGVQQALLKI--IEGTTAQVPPQGG----- 220

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                                     +   Q+            L+ +DT    +I  + 
Sbjct: 221 -------------------------RKHPQQE------------LVQVDT---RNILFIV 240

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 +++  +        G G   +G + + +  +    V  K+G I           
Sbjct: 241 GGAFDGMEDIARSRTNVRSVGFGAEAKGEEHEEVRFMPEDLV--KFGLI----------- 287

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                      PE  GR P+ V L+ L++     ILT+ +  +I QY+ L   +G+ L F
Sbjct: 288 -----------PEFVGRLPLVVQLQDLDEEALVRILTEPQGAIIRQYQALFGFQGVDLTF 336

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           TE+++  +A  A    +     GAR L+ V+E+ + D+ F   
Sbjct: 337 TEEALQEVAKRARERKT-----GARGLRAVLEKAMTDLLFELP 374


>gi|297622837|ref|YP_003704271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera
           radiovictrix DSM 17093]
 gi|297164017|gb|ADI13728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera
           radiovictrix DSM 17093]
          Length = 398

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 105/410 (25%), Positives = 166/410 (40%), Gaps = 85/410 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PRE+ ++LD Y++ Q+ AK+ +A+A+ N + R Q P     EL   NILL+GP+G GKT
Sbjct: 56  TPREVKAQLDAYVVEQEAAKKTLAVAVFNHYLRLQHPDS---ELQKANILLLGPSGTGKT 112

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V             
Sbjct: 113 LLAQTLARILQVPFAIADATTLTEAGYVGDDVENILVRLLQTANYNV------------- 159

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
             AE  I+                            EID ++A  S   S      G  V
Sbjct: 160 EAAERGII-------------------------YIDEID-KIARKSEGTSITRDVSGEGV 193

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               L                   ++     +      +    + V  D+  ++   G  
Sbjct: 194 QQALL-----------------KIIEGAVTYVPPQGGRKHPHQELVAIDTTNILFICGGA 236

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           F    D I  R   + +G + +G         EG   +     I  D + F         
Sbjct: 237 FEGLEDIIRNRVDVSKVGFNYDG---------EGDRGAVTAQVIPEDLVRF--------- 278

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE+ GR  V   L+ L+      +LT  ++ L+ QY+EL + EG+ L F+E ++
Sbjct: 279 ---GLIPELIGRLAVTATLEELSLEALVDVLTQPKNALVKQYRELFRLEGVELTFSEGAL 335

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
             +A  A  L +     GAR L++V+E+ L ++ F         V I  E
Sbjct: 336 YEVARRAKALGT-----GARGLRSVLEKTLLELMFEVPGSDITAVNITLE 380


>gi|296127044|ref|YP_003634296.1| hypothetical protein Bmur_2020 [Brachyspira murdochii DSM 12563]
 gi|296018860|gb|ADG72097.1| Sigma 54 interacting domain protein [Brachyspira murdochii DSM
           12563]
          Length = 411

 Score =  242 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 170/426 (39%), Gaps = 82/426 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGV 64
             P++I S LD Y+IGQ  AK+ +++A+ N ++R    A+     E+   N+LL+GPTG 
Sbjct: 64  LPPKQIKSLLDEYVIGQNYAKKVLSVAVYNHYKRITQSAEDKNDVEIEKSNVLLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A   ++ + +  +  
Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADGDIKLAEKGIIY- 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E  +                 
Sbjct: 183 ------IDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGG--------- 227

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                                    +    D +H D+  ++   
Sbjct: 228 ----------------------------------------RKHPHQDNLHIDTSNILFIC 247

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
           G  F+D    I  R S  G+G + E    D L   E         +I+T+ ++       
Sbjct: 248 GGAFIDIEKSIAERTSKKGLGFAAEVNSMDNLNYDEI------MKNISTEDLV------- 294

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   L+ L + +   IL + ++ L  QY++L   + I L   +
Sbjct: 295 ----KYGLIPELIGRLPVIATLEELKEEELLQILKEPKNALTKQYQKLFSYDNIELKIDD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV--IDAEYVRLH 422
           +++  +    +         GAR L+ + ERV+ D  +   D  ++  V  +D EYV   
Sbjct: 351 EALKVIVKKTME-----EHTGARGLRALFERVMLDAMYDMPDDNKEKKVFELDKEYVESR 405

Query: 423 IGDFPS 428
           +G    
Sbjct: 406 LGTVNE 411


>gi|93007059|ref|YP_581496.1| ATP-dependent protease ATP-binding subunit [Psychrobacter
           cryohalolentis K5]
 gi|122414802|sp|Q1Q8J1|CLPX_PSYCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|92394737|gb|ABE76012.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter
           cryohalolentis K5]
          Length = 424

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 184/434 (42%), Gaps = 102/434 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------------DLRDELMP 53
           +P+E+ ++LD Y+IGQ  AK+A+A+A+ N ++R ++                D   EL  
Sbjct: 66  TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQILANDSKKAKIGADDAMVELAK 125

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  +   
Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQASDYD 185

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           V ++ +  +         + I          S TR+V  + ++   +  K I+  VA   
Sbjct: 186 VSKAEQGIIY-------IDEIDKISKKGDNPSITRDVSGEGVQQALL--KLIEGTVAAIP 236

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                                              +   Q+            LI +DT 
Sbjct: 237 PHGG------------------------------RKHPQQE------------LIQVDT- 253

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
              +I ++       LD+   I  R    GIG + +                     +++
Sbjct: 254 --SNILIIVGGAFAGLDKV--IQQRTEKTGIGFNAD---------------------VSS 288

Query: 294 DHILFIASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                 +S       P D     L+PE+ GR PV   L  L++     ILT+ ++ L+ Q
Sbjct: 289 KDDSRRSSELLQQVEPEDLIKFGLIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQ 348

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           YK L   EG  + FT++++DA+A  A+   +     GAR L++++E  L +  +    ++
Sbjct: 349 YKYLFDMEGADITFTKEALDAIAKKAMARKT-----GARGLRSIVENALLETMYELPSMK 403

Query: 409 E-KTVVIDAEYVRL 421
           + KTV++D + +  
Sbjct: 404 DAKTVLVDEQVINE 417


>gi|196001235|ref|XP_002110485.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
 gi|190586436|gb|EDV26489.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens]
          Length = 563

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 166/479 (34%), Gaps = 125/479 (26%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------QQLPADLRDELM 52
           PR+I   L RYI+GQ+ AKR +++A+ N ++R                Q           
Sbjct: 110 PRKIYDYLCRYIVGQERAKRILSVAVYNHYKRLYFNNLPVLSKPAFDKQNWKQKTDGTKD 169

Query: 53  PKNIL----------------------------------------LVGPTGVGKTAISRR 72
             N++                                        L GPT  GKT +++ 
Sbjct: 170 QGNLMQIRGRNATQTNQLQQETPINGTDLLDNNISALKLEKSNIVLFGPT--GKTLLAQT 227

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           LAR    PF   + T  T+ GYVG ++E +I  L+  A   V  +++  V          
Sbjct: 228 LARCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQDANYNVSRAQQGIV---------- 277

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
             LD                             +++       I      GG  V    L
Sbjct: 278 -FLD-----------------------------EVDKIGCVPGIHQLRDVGGEGVQQ-GL 306

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
            ++    + +  +K +R                   +   V    I  V +     LD  
Sbjct: 307 LKMLEGSIVNVPEKSLRKMRGDA-------------NSFAVDTTHILFVASGAFNGLDRV 353

Query: 253 DKIVARDSGNGIGVSREGVQR-----DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
             +  R     +G     +Q+          +    + +    +    +L     A  + 
Sbjct: 354 --VSRRKHKKFLGFGAPSLQKLGRRAAAEASLASDPIESSIEDLKERDLLLSDVEAQDMI 411

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GRFPV  H++SL++     ILT+ E+ L+ QYK L + + + L  T+ + 
Sbjct: 412 -DFGLIPEFVGRFPVLCHIESLDEEALMRILTEPENALLRQYKALFEMDKVQLAITDGAC 470

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
            A+A +A+   +     GAR L+++MER+L D  F         ++ID + V       
Sbjct: 471 LAIAKMALQKKT-----GARGLRSIMERLLLDSMFEVPGSDIVEIIIDEDVVNGRKSPV 524


>gi|168031008|ref|XP_001768014.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680856|gb|EDQ67289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 446

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 169/441 (38%), Gaps = 100/441 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRA--VAIALRNRWRRQQLP--------------------- 44
           +PREI   LD++++GQ+ AK+A  +++A+ N ++R                         
Sbjct: 12  TPREICQALDKFVVGQEQAKKARILSVAVYNHYKRIYFESMRKGNAKPTNEGFGVSEVEC 71

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
            +   EL   N+LL+GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+ 
Sbjct: 72  EENDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILY 131

Query: 105 DLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            L+  A   V  +++  +            +D +   T  + ++ + R            
Sbjct: 132 KLLVEAEFNVLAAQQGIIY-----------IDEVDKITKKAESKNISR------------ 168

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
            D+        +         +V      +           K I       + EL +  +
Sbjct: 169 -DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGEHIQIDTKDILFICGGAFVELEKSIA 227

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           +R  D  ++   +       G   +D                    +   LL  VE S +
Sbjct: 228 ERKQDS-SIGFGAPVRANMRGNKLIDA------------------AITSSLLETVESSDL 268

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
              YG I                      PE  GRFPV V L +L++     +LT+  + 
Sbjct: 269 -ISYGLI----------------------PEFIGRFPVIVSLSALDEDQLVQVLTEPRNA 305

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QYK++     + L +TE  +  +A  AV  N+     GAR L++ +E VL +  +  
Sbjct: 306 LGKQYKKMFAMNNVKLHYTEGGLRRIAQKAVVKNT-----GARGLRSTLETVLTEAMYQV 360

Query: 405 SDL------QEKTVVIDAEYV 419
            D       Q   VV+D + V
Sbjct: 361 PDSISNEGEQVDAVVLDEDAV 381


>gi|46447011|ref|YP_008376.1| ATP-dependent protease ATP-binding subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|61211514|sp|Q6MBE8|CLPX_PARUW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46400652|emb|CAF24101.1| probable ATP-dependent Clp protease ATP-binding subunit X
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 413

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 173/428 (40%), Gaps = 80/428 (18%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P+EI  +LD YIIGQ++AK+ +++ + N ++R +      D  E    N+LL GPTG 
Sbjct: 59  LKPKEIKEKLDEYIIGQENAKKTISVGVYNHYKRIRSKNKEADGIEFSKSNVLLFGPTGS 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I++ LA +   PF   + T  TE GYVG +VE II  L+  A   V +        
Sbjct: 119 GKTLIAKTLASILDVPFTIADATTLTEAGYVGEDVENIILRLLQAADYDVAK-------- 170

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                AE+ I+                            EID ++  T++++S      G
Sbjct: 171 -----AEQGII-------------------------YIDEID-KINRTTANVSITRDVSG 199

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
             V    L  +   +     K   +   Q+                  V+ ++I  +   
Sbjct: 200 EGVQQALLKIVEGTIANVPPKGGRKHPNQEYIK---------------VNTENILFIVGG 244

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             V L++   I  R   N IG    G  R+++   + S + +K    +      I  G  
Sbjct: 245 AFVNLEKI--IAKRLGRNTIGFD--GSNREVVDPTQKSLLLSKVEPED-----LIQFG-- 293

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GRF    +   L   D   ILT+ ++  I Q+  + + EG+ L FTE
Sbjct: 294 -------MIPEFVGRFNSIANCNELQLPDLINILTEPKNAFIKQFIAMFEAEGVKLQFTE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           D++ A     +   +     GAR L+ ++E ++ ++ +    D     ++I+ E V    
Sbjct: 347 DALAA-----IAQQAIEAGTGARALRLILENLMRELMYEIPSDETISEILIEKETVTEKK 401

Query: 424 GDFPSETD 431
                  D
Sbjct: 402 PPIIKRHD 409


>gi|296809019|ref|XP_002844848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma
           otae CBS 113480]
 gi|238844331|gb|EEQ33993.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma
           otae CBS 113480]
          Length = 599

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 182/494 (36%), Gaps = 92/494 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQQLPADL-----RDE----- 50
           +P+ +   LD +++GQ  AKR +++A+ N +       RR +   +L     R E     
Sbjct: 73  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 132

Query: 51  ------------------------------------------LMPKNILLVGPTGVGKTA 68
                                                     L   NILL+GP+GVGKT 
Sbjct: 133 PVEGIDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTL 192

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     +
Sbjct: 193 MAKTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CL 248

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +  ++I  A V      +   V +  L+  E +  +I  +    +S  S+          
Sbjct: 249 DEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSSGGNSSPGGSS 308

Query: 189 ILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
               S    K    + R   I       +  L +      + MD + R SI   +     
Sbjct: 309 YNPTSNSSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRAS 362

Query: 248 --FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
               D     +        G   E + +  LP    +   T   + + + + F       
Sbjct: 363 SFHNDSTPTKMNAPIPILPGSHEEALYKQYLPFFTPTQTPT---APDEEPVYF---NPLD 416

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
           +  P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L
Sbjct: 417 LVTPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIEL 476

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            FT  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++      
Sbjct: 477 RFTTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAA 531

Query: 421 LHIGDFPSETDMYH 434
                      +  
Sbjct: 532 RKEKAI----YLSR 541


>gi|327300811|ref|XP_003235098.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
 gi|326462450|gb|EGD87903.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892]
          Length = 594

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 183/481 (38%), Gaps = 88/481 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQQLPADL------------- 47
           +P+ +   LD +++GQ  AKR +++A+ N +       RR +   +L             
Sbjct: 72  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 131

Query: 48  --RDE-----------------------------------LMPKNILLVGPTGVGKTAIS 70
              DE                                   L   NILL+GP+GVGKT ++
Sbjct: 132 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 191

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++ 
Sbjct: 192 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CLDE 247

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V      +   V +  L+  E +  +I  +    +S  S             
Sbjct: 248 IDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSPGGSGSSGGTSYN 307

Query: 191 NLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
           + S    K    + R   I       +  L +      + MD + R SI   +       
Sbjct: 308 STSGPSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSF 361

Query: 250 DEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D    +++       G   E + +  LP    +   T   + + + + F       +
Sbjct: 362 QN-DSTQTKNNAPIPILPGSHEEALYKKYLPFFTPTQTPT---APDEEPVYF---NPLDL 414

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L 
Sbjct: 415 VTPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELR 474

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++       
Sbjct: 475 FTTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAAR 529

Query: 422 H 422
            
Sbjct: 530 K 530


>gi|302505569|ref|XP_003014491.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371]
 gi|291178312|gb|EFE34102.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371]
          Length = 610

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 183/481 (38%), Gaps = 88/481 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQQLPADL------------- 47
           +P+ +   LD +++GQ  AKR +++A+ N +       RR +   +L             
Sbjct: 88  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147

Query: 48  --RDE-----------------------------------LMPKNILLVGPTGVGKTAIS 70
              DE                                   L   NILL+GP+GVGKT ++
Sbjct: 148 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 207

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++ 
Sbjct: 208 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CLDE 263

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V      +   V +  L+  E +  +I  +    +S  S             
Sbjct: 264 IDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSPGGSGSSGGTSYN 323

Query: 191 NLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
           + S    K    + R   I       +  L +      + MD + R SI   +       
Sbjct: 324 STSGPSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSF 377

Query: 250 DEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D    +++       G   E + +  LP    +   T   + + + + F       +
Sbjct: 378 QN-DSTQTKNNAPIPILPGSHEEALYKKYLPFFTPTQTPT---APDEEPVYF---NPLDL 430

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L 
Sbjct: 431 VTPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELR 490

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++       
Sbjct: 491 FTTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAAR 545

Query: 422 H 422
            
Sbjct: 546 K 546


>gi|190570983|ref|YP_001975341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019500|ref|ZP_03335306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357255|emb|CAQ54679.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994922|gb|EEB55564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 425

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 169/428 (39%), Gaps = 92/428 (21%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           MKL     P +I   L ++++GQ+ A+  +++A+ N  +       + D E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMVQLHSISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++ 
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVAKAQH 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V         + I        +TS TR+V  + ++   +   E  +            
Sbjct: 182 GIV-------FIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGG---- 230

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                                        +   Q+                  V   +I 
Sbjct: 231 ----------------------------RKHPQQEFI---------------QVDTSNIL 247

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       L++   I AR  G  +G   +  Q                           
Sbjct: 248 FICGGAFEGLNKI--IEARKKGTSVGFGADISQSKAQK---------------------- 283

Query: 300 ASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              A   ++P D     L+PE  GR P+   L  L+  D   +LT+  + L+ QYK L+ 
Sbjct: 284 KKNALRDAQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALVKQYKALLA 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTV 412
              + L+F++++I A+A  A++  +     GAR L+ ++E +L D+ + + +   +  T+
Sbjct: 344 FSKVNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDVMYISGNGGFEGSTI 398

Query: 413 VIDAEYVR 420
            +  + V 
Sbjct: 399 TVTKKMVE 406


>gi|326485123|gb|EGE09133.1| ATP-dependent Clp protease [Trichophyton equinum CBS 127.97]
          Length = 604

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 180/480 (37%), Gaps = 86/480 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQQLPADL------------- 47
           +P+ +   LD +++GQ  AKR +++A+ N +       RR +   +L             
Sbjct: 81  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140

Query: 48  --RDE-----------------------------------LMPKNILLVGPTGVGKTAIS 70
              DE                                   L   NILL+GP+GVGKT ++
Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++ 
Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CLDE 256

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V      +   V +  L+  E +  +I  +    +S  S       +     
Sbjct: 257 IDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSAGGSGSSSGTSYN 316

Query: 191 NLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF- 248
             S    K    + R   I       +  L +      + MD + R SI   +       
Sbjct: 317 PTSGPSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSF 370

Query: 249 -LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
             D              G   E + +  LP    +   T   + + + + F       + 
Sbjct: 371 QNDSMQTKNNAPIPILPGSHEEALYKKYLPFFTPTQTPT---APDEEPVYF---NPLDLV 424

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L F
Sbjct: 425 TPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRF 484

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++        
Sbjct: 485 TTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAARK 539


>gi|293376038|ref|ZP_06622291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sanguinis PC909]
 gi|325844603|ref|ZP_08168246.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sp. HGF1]
 gi|292645339|gb|EFF63396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sanguinis PC909]
 gi|325489028|gb|EGC91415.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter
           sp. HGF1]
          Length = 408

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/422 (22%), Positives = 165/422 (39%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P+EI   L+ Y+IGQ+D K+ +A+A+ N ++R     D  D  E+   NILL+G TG G
Sbjct: 58  KPKEIFDLLNEYVIGQEDVKKVLAVAVYNHYKRLTSNQDDSDGVEISKSNILLLGSTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V +++R  +   
Sbjct: 118 KTLLAQTLAKVLDVPFAIADATSLTEAGYVGEDVENILLRLLQAADFNVEKAQRGII--- 174

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                                                 EID ++A  S + S      G 
Sbjct: 175 -----------------------------------YIDEID-KIARRSDNPSITRDVSGE 198

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    L  L   V     +   +   Q+             I +DT    +I  +    
Sbjct: 199 GVQQALLKILEGSVANVPPQGGRKHPNQE------------FIQIDT---TNILFMAGGA 243

Query: 246 IVFLDEFDK--IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
              ++E  K  I  +  G G       + +  +          K+G I      F   GA
Sbjct: 244 FAGIEEVVKRRIGKKVIGFGADSKANNLTKKEIYAHIQPDDLLKFGLIPEFIGRFPIIGA 303

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
            +     DL+                       ILT+ ++ L  QY+++ K + + L F 
Sbjct: 304 LNPLEVEDLI----------------------RILTEPKNALTKQYEKIFKMDNVELVFD 341

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           E +I A+A+ AV   +     GAR L++++E ++ D+ F     +  +  +I  + +  +
Sbjct: 342 EGAITAIAEKAVERKT-----GARGLRSIIESIMTDVMFEIPSTENIEKCIITRDVIVDN 396

Query: 423 IG 424
             
Sbjct: 397 TK 398


>gi|149194750|ref|ZP_01871845.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135173|gb|EDM23654.1| ATP-dependent protease ATP-binding subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 404

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 171/429 (39%), Gaps = 88/429 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EI + LD Y+IGQ+ AK+ +++A+ N ++R         E+   NIL++GPTG GK
Sbjct: 57  LTPKEIKAHLDEYVIGQERAKKIISVAVYNHYKRILYGDTQDVEIQKSNILMIGPTGSGK 116

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+R LA+L   P    + T  TE GYVG +VE ++  L+  A   ++++ R  V    
Sbjct: 117 TLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAADGDIKKAERGIV---- 172

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                                EID ++A  S + S      G  
Sbjct: 173 ----------------------------------FIDEID-KIARKSENPSITRDVSGEG 197

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           V    L  +   ++    +   +   Q+             I +DT    +I  +     
Sbjct: 198 VQQALLKIIEGSIVNVPPQGGRKHPHQE------------FIQIDT---TNILFICGGAF 242

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQR----DLLPLVEGSSVSTKYGSINTDHILFIASG 302
             L+E   I  R  G  +G   +  ++    D+  LVE   +  KYG I           
Sbjct: 243 EGLEEI--IQRRLEGATVGFLGKTKEKLSKDDIFSLVEPEDL-VKYGLIPEIVGRLPVIA 299

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                   DL         +RV ++   K                QYK L   +G+ L+F
Sbjct: 300 TLKELDKEDL---------IRVLVEP--KDALIK-----------QYKALFAIDGVELEF 337

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +D+++A+A+ A+   +     GAR L+ ++E ++ DI F+  D +   VVI  + V  H
Sbjct: 338 EKDALEAIAEKAIKRGT-----GARGLRAILEEIMVDIMFNLPDYKGYKVVITKDVVENH 392

Query: 423 IGDFPSETD 431
                 + +
Sbjct: 393 SEPILIKKE 401


>gi|315048507|ref|XP_003173628.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma
           gypseum CBS 118893]
 gi|311341595|gb|EFR00798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma
           gypseum CBS 118893]
          Length = 655

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 183/481 (38%), Gaps = 88/481 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWR---------------------------- 39
           +P+ +   LD +++GQ  AKR +++A+ N ++                            
Sbjct: 130 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEEHLAQRARRESMESH 189

Query: 40  ------------------RQQLPADLRDE-----------LMPKNILLVGPTGVGKTAIS 70
                             R+    +L  E           L   NILL+GP+GVGKT ++
Sbjct: 190 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 249

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++ 
Sbjct: 250 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQTERGII----CLDE 305

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V      +   V +  L+  E +  +I  +    +S  S+            
Sbjct: 306 IDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSSGSNSSPGGSSYN 365

Query: 191 NLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
           + S    K    + R   I       +  L +      + MD + R SI   +       
Sbjct: 366 STSSPSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSF 419

Query: 250 DEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
              D    +++       G   E + +  LP    +   T   + + + + F       +
Sbjct: 420 QT-DSTQIKNNAPVPILPGSREEALYKQYLPFFTPTQTPT---APDEEPVYF---NPLDL 472

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L 
Sbjct: 473 VTPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELR 532

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++       
Sbjct: 533 FTTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAAR 587

Query: 422 H 422
            
Sbjct: 588 K 588


>gi|332524023|ref|ZP_08400275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315287|gb|EGJ28272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 409

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 165/430 (38%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+++A+ N ++R        DE   L   NIL++
Sbjct: 58  LTEVPKPKELLETLNQYVVGQDRAKRALSVAVYNHYKRVSFAESRDDEEVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       D+     +  E +Q               +G I        
Sbjct: 268 FGQNSRK--IDE-------DASYMQEIISEDIQT--------------FGLIPEFIGRLP 304

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A      +D                         ILT+ ++ L+ QY+ L+  +G+ 
Sbjct: 305 VVAALEQLSTSD----------------------LVKILTEPKNALVKQYQTLLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L F ++++DA+A+ A+   +     GAR L++++E  + D+ F     ++ T V I  + 
Sbjct: 343 LTFDQEALDAIAEKAIARKT-----GARGLRSIIEETMLDLMFEIPSQEDVTKVRITKDA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VDGTAKPILE 407


>gi|326468658|gb|EGD92667.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818]
          Length = 604

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 180/480 (37%), Gaps = 86/480 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQQLPADL------------- 47
           +P+ +   LD +++GQ  AKR +++A+ N +       RR +   +L             
Sbjct: 81  TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140

Query: 48  --RDE-----------------------------------LMPKNILLVGPTGVGKTAIS 70
              DE                                   L   NILL+GP+GVGKT ++
Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           + LAR+   PF   + T FT+ GY+G + +  +  L+  A   V ++ R  +     ++ 
Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAERGII----CLDE 256

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ++I  A V      +   V +  L+  E +  +I  +    +S  S       +     
Sbjct: 257 IDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAKPERNASRPSAGGSGSSSGTSYN 316

Query: 191 NLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF- 248
             S    K    + R   I       +  L +      + MD + R SI   +       
Sbjct: 317 PTSGPSGKAEVYNIRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQPIRASSF 370

Query: 249 -LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
             D              G   E + +  LP    +   T   + + + + F       + 
Sbjct: 371 QNDLMQTKNNAPIPILPGSHEEALYKKYLPFFTPTQTPT---APDEEPVYF---NPLDLV 424

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P+DL     +PE+ GR P+   L  L+ S    ILT+  ++L+ QY  L    GI L F
Sbjct: 425 TPSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRF 484

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           T  ++  +A  A  +++     GAR L+T ME +L D  F A     K V++        
Sbjct: 485 TTAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLVTEAVAARK 539


>gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
           Brasil 5]
          Length = 324

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 147/378 (38%), Gaps = 79/378 (20%)

Query: 27  KRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85
           K+ +++A+ N ++R    + +   EL   NI+LVGPTG GKT +++ LAR+   PF   +
Sbjct: 25  KKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMAD 84

Query: 86  VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATS 145
            T  TE GYVG +VE II  L+  A   V  ++R  V                       
Sbjct: 85  ATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV----------------------- 121

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
                             E+D +++  S + S      G  V    L  +   V     +
Sbjct: 122 ---------------YIDEVD-KISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQ 165

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
              +   Q+                  V   +I  +       LD+   I AR     IG
Sbjct: 166 GGRKHPQQEFL---------------QVDTTNILFICGGAFAGLDKI--ISARGEKTSIG 208

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
                          G++V  +    +      +            L+PE  GR PV   
Sbjct: 209 F--------------GATVKAQD---DRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLAT 251

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L++     IL++ ++ LI QY+ L + E + L F ED++  +A  A+   +     G
Sbjct: 252 LEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKT-----G 306

Query: 386 ARRLQTVMERVLEDISFS 403
           AR L+++ME++L D  F 
Sbjct: 307 ARGLRSIMEKILLDTMFE 324


>gi|300774297|ref|ZP_07084161.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300506941|gb|EFK38075.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 378

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 171/420 (40%), Gaps = 83/420 (19%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLV 59
            +     P+EI   LD+Y+IGQ  AK+ ++IA+ N ++R     D     EL   NI+++
Sbjct: 36  SMDELKKPKEIKEFLDQYVIGQDQAKKQLSIAVYNHYKRLLHAQDENREVELEKSNIIMI 95

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ +
Sbjct: 96  GETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDVEKAEK 155

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             V                                         EID ++A  S + S  
Sbjct: 156 GIV--------------------------------------FIDEID-KIARKSDNPSIT 176

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G  V    L  L   ++    +   +   QK                  V+  +I 
Sbjct: 177 RDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYI---------------QVNTQNIL 221

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            +       + E   I  R +   IG S E + +                  + D  +  
Sbjct: 222 FIAGGAFDGIKEI--IERRMNKQAIGFSSEKINKT-----------------DEDEYILT 262

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A  + R   L+PE+ GRFP+  +L  L K     I+ + +++++ Q+ EL K +G  
Sbjct: 263 NINAIDL-RTFGLIPELLGRFPIITYLDKLTKETLVRIMKEPKNSIVNQFVELFKMDGTN 321

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L  T+ +I+ + +  +        +GAR L+   E+VLED  FS  +  EK +++  + V
Sbjct: 322 LVITDGAIEKIVEETIEKG-----LGARGLRGTTEKVLEDYMFSIGE--EKEIILTEDNV 374


>gi|297517735|ref|ZP_06936121.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           OP50]
          Length = 334

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 148/397 (37%), Gaps = 78/397 (19%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
            + ++   +  K I+  VA                       +   +        KI   
Sbjct: 114 GEGVQQVLL--KLIEGTVAAVPPQ---------------GGRKHPQQEFLQVDTSKILFI 156

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
               +  L                                 DK+++     G G+     
Sbjct: 157 CGGAFAGL---------------------------------DKVISHRVETGSGI----- 178

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
                    G   + K  S        +A           L+PE  GR PV   L  L++
Sbjct: 179 ---------GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSE 229

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
                IL + ++ L  QY+ L   EG+ L+F ++++DA+A  A+   +     GAR L++
Sbjct: 230 EALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT-----GARGLRS 284

Query: 392 VMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
           ++E  L D  +    +++ + VVID   +        
Sbjct: 285 IVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLL 321


>gi|294670435|ref|ZP_06735317.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307899|gb|EFE49142.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 336

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 161/395 (40%), Gaps = 79/395 (20%)

Query: 30  VAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88
           +A+A+ N ++R + P A    EL   NILL+GPTG GKT +++ LAR    PF+  + T 
Sbjct: 1   MAVAVYNHYKRLRHPKAGGAVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATT 60

Query: 89  FTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTR 148
            TE GYVG +VEQII  L+      V +++R  V         + I          S TR
Sbjct: 61  LTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY-------IDEIDKISRKSDNPSITR 113

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           +V  + ++   +  K I+  VA                                      
Sbjct: 114 DVSGEGVQQALL--KLIEGTVASVPPQGG------------------------------R 141

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           +                   + D +  D+  ++   G  F      I  R    GIG   
Sbjct: 142 KHP-----------------NQDFIQVDTTNILFICGGAFAGLEKVIRQRTEKGGIGF-- 182

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
                       G++V +K  + +   +  I            L+PE+ GR PV   L  
Sbjct: 183 ------------GAAVHSKDENADISELFEIVE--PEDLIKFGLIPELIGRLPVIATLAE 228

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L++     ILT+ ++ L+ QY+ L   EG  L+F  D++ A+A +A+   +     GAR 
Sbjct: 229 LDEDALINILTEPKNALVKQYQALFAMEGAELEFEPDALRAIAKLAMTRKT-----GARG 283

Query: 389 LQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLH 422
           L++++ER L +  +   +L Q K  VI AE +  +
Sbjct: 284 LRSIVERALLETMYRLPNLPQVKKAVITAEVIENN 318


>gi|22537459|ref|NP_688310.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76798608|ref|ZP_00780836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77409179|ref|ZP_00785891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
 gi|46576570|sp|Q8DZ10|CLPX_STRA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|22534337|gb|AAN00183.1|AE014252_6 ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 2603V/R]
 gi|76586042|gb|EAO62572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 18RS21]
 gi|77172225|gb|EAO75382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae COH1]
          Length = 408

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/416 (22%), Positives = 160/416 (38%), Gaps = 83/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG G
Sbjct: 63  KPKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 123 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYV- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 182 ------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---------- 223

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++ M     K I   V   +  +      RL          I   +   
Sbjct: 224 -----GGRKHPNQEMIQINTKNILFIVGGAFDGIEDLVKQRL------GEKVIGFGQT-- 270

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                      +R   +     +E +  D+           K+G I           A  
Sbjct: 271 -----------SRKIDDNASYMQEIISEDIQ----------KFGLIPEFIGRLPVVAALE 309

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +    D                         ILT+  + L+ QY+ L+  +G+ L+F +D
Sbjct: 310 LLTAED----------------------LVRILTEPRNALVKQYQTLLSYDGVELEFDQD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           ++ A+AD A+   +     GAR L++++E  + DI F     ++ T V I    V 
Sbjct: 348 ALLAIADKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVE 398


>gi|134055137|emb|CAK37083.1| unnamed protein product [Aspergillus niger]
          Length = 557

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 173/483 (35%), Gaps = 137/483 (28%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM------------ 52
           +PR +   LD++++GQ  AK+ +++A+ N ++R    Q   +   EL+            
Sbjct: 86  TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 145

Query: 53  ---------------------------------------PKNILLVGPTGVGKTAISRRL 73
                                                    NILL+GP+GVGKT +++ L
Sbjct: 146 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 205

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T FT+ GY+G + E  +  L+  A   V ++ R     DEV      
Sbjct: 206 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEV------ 259

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              ++I  A V      +   V +  L+  E +  ++  +   ++               
Sbjct: 260 ---DKIAAAKVSHGKDVSGEGVQQALLKLIEGTTVQVQAKQERSAP-------------- 302

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                    + + + R   I       +  L +      + MD + R SI   +      
Sbjct: 303 ---------REVYNVRTDNILFIFSGAFVGLHK------VIMDRISRGSIGFGQPV---- 343

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                                 + +  LP    ++      S +++   F    A  +  
Sbjct: 344 --------------------RALYKKHLPFFTSATSPN---SPDSEPTYF---NALDLLN 377

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR PV   L +L       ILT+  ++L+ QY  L    GI + FT
Sbjct: 378 PTDLQNYGFIPELVGRVPVTAALSTLTTPLLVRILTEPRNSLLAQYTTLFSLSGIEIRFT 437

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
             ++  +A  A  + +     GAR L+T +E +L D  F       K V++       + 
Sbjct: 438 TPALHKIAANAFTMGT-----GARALRTELETILSDAMFETPGSSVKFVLVTESVAERNE 492

Query: 424 GDF 426
              
Sbjct: 493 KPI 495


>gi|225621124|ref|YP_002722382.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225215944|gb|ACN84678.1| ATP-dependent protease ATP-binding subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 410

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 171/423 (40%), Gaps = 84/423 (19%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGV 64
             P++I S LD Y++GQ  AK+ +++++ N ++R    A+     E+   N+LL+GPTG 
Sbjct: 64  LPPKQIKSLLDEYVVGQDYAKKVLSVSVYNHYKRITQNAEDKNDVEIEKSNVLLIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A   ++ + +  +  
Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNADGDIKLAEKGIIY- 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I        + S TR+V  + ++   +   E  +                 
Sbjct: 183 ------IDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGG--------- 227

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                                   +                     D +H D+  ++   
Sbjct: 228 -----------------------RKHP-----------------HQDNLHIDTSNILFIC 247

Query: 245 GIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           G  F+D  +K I  R S  G+G + E    D L   E         +I T+ ++      
Sbjct: 248 GGAFID-IEKSIAERTSKKGLGFAAEVNSMDNLNYDEI------MKNIATEDLV------ 294

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR PV   L+ L + +   IL + ++ L  QY++L   + I L   
Sbjct: 295 -----KYGLIPELIGRLPVIATLEELKEEELLKILKEPKNALTKQYQKLFSYDNIELKID 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVRL 421
           +D++ ++    +         GAR L+ + ERV+ D  +   +  ++     +D +YV  
Sbjct: 350 DDALKSIVKKTME-----EHTGARGLRALFERVMLDAMYDMPNESKEKQVFELDKKYVNE 404

Query: 422 HIG 424
            +G
Sbjct: 405 KLG 407


>gi|239623321|ref|ZP_04666352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522287|gb|EEQ62153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 474

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 97/438 (22%), Positives = 172/438 (39%), Gaps = 90/438 (20%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------ADLRDEL 51
           + +    +P  I S LD Y+IGQ+ AK+ VA+A+ N ++R  L           D    +
Sbjct: 114 LTMKDIPAPHIIKSRLDEYVIGQEKAKKVVAVAVYNHYKRAFLDNRSAQGDAAPDEDIVI 173

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NIL++GPTG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A 
Sbjct: 174 EKSNILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAD 233

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           N V  ++R  +     I+  ++I       T   +   V ++ L+  E S  E+      
Sbjct: 234 NDVERAQRGII----FIDEIDKIAKKKQTNTRDVSGESVQQELLKLLEGSTVEV------ 283

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
               + +        +  +N   +                    +P+L        I  +
Sbjct: 284 ---PVGSNQKNAMTPMATVNTDNIL-------------FICGGAFPDLEE------IIKE 321

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + S      +G V  D +D                    D+L  V    +       
Sbjct: 322 RLKKKS---SMGFGSVLKDTYD-----------------NDPDILKHVTNEDL------- 354

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                           R   ++PE  GR PV V L+ L +     IL + ++ +  QY++
Sbjct: 355 ----------------RAFGMIPEFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQYEK 398

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEK 410
           L+  + + L F +D++  +A+ A    +     GAR L+ ++E  + DI +    D    
Sbjct: 399 LLSMDEVKLVFEDDALRWIAEEAGKRGT-----GARALRAILEEFMLDIMYEIPKDSNIG 453

Query: 411 TVVIDAEYVRLHIGDFPS 428
           +VV+   Y+  + G    
Sbjct: 454 SVVVTRPYLEKNGGPLIQ 471


>gi|189219050|ref|YP_001939691.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylacidiphilum infernorum V4]
 gi|189185908|gb|ACD83093.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Methylacidiphilum infernorum V4]
          Length = 420

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 163/435 (37%), Gaps = 94/435 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---------LRDELMPKNILL 58
            P EI ++L+ Y+IGQ  AK+ +++A+ N ++R                  E+   NILL
Sbjct: 62  KPAEIFAQLEDYVIGQNKAKKVLSVAVHNHYKRIFSSELTDLSSLNQLKDVEIEKTNILL 121

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VGPTG GKT +++ +ARL   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 122 VGPTGSGKTLLAKTIARLLDVPFCIADATSLTEAGYVGEDVESILLRLLQNANFDVKKAE 181

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
              V         + I        + S TR+V  + ++            +      + N
Sbjct: 182 MGIVY-------IDEIDKISRKSDSPSITRDVSGEGVQQAL---------LKMLEGSVCN 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               GG                                    ++          ++ ++I
Sbjct: 226 VPPQGG-------------------------------RKHPHQEFI-------RINTENI 247

Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
             +     + LD+   I  R      G   S EG         E             +  
Sbjct: 248 LFICGGAFIGLDKI--IARRRGKQVLGFKQSLEGEDAASEEFTE------------IEPE 293

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
             IA G         ++PE  GRFPV   L  L++ +   ILT+ ++ +I QY +L   +
Sbjct: 294 DLIAYG---------MIPEFVGRFPVITSLSELSEEELVKILTEPKNAIIKQYVKLFALD 344

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVID 415
            I L+F +++I   A  A    +     GAR L+ ++E+V+ ++ F        + V+I 
Sbjct: 345 HIKLNFAKEAIRFFAQEAKKKKT-----GARALKNMIEKVMLEVMFDLPSRTDIEEVIIS 399

Query: 416 AEYVRLHIGDFPSET 430
                          
Sbjct: 400 RPVAEGKKAPILKRR 414


>gi|313890517|ref|ZP_07824145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121034|gb|EFR44145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 417

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 98/422 (23%), Positives = 165/422 (39%), Gaps = 84/422 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+A+A+ N ++R        DE   L   NIL++
Sbjct: 66  LTEVPKPKELLETLNQYVVGQDRAKRALAVAVYNHYKRVSFAESRDDEEVELQKSNILMI 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 126 GPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 185

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 186 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 232

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 233 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 275

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       D+     +  E +Q               +G I        
Sbjct: 276 FGQNSRK--IDE-------DASYMQEIISEDIQT--------------FGLIPEFIGRLP 312

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A       DL                        ILT+ ++ L+ QY+ L+  +G+ 
Sbjct: 313 VVAALEQLNTKDL----------------------VKILTEPKNALVKQYQTLLSYDGVE 350

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418
           L F ++++DA+A+ A+   +     GAR L++++E  + D+ F     ++ T V I  + 
Sbjct: 351 LTFDQEALDAIAEKAIARKT-----GARGLRSIIEETMLDLMFEIPSQEDVTKVRITKDA 405

Query: 419 VR 420
           V 
Sbjct: 406 VD 407


>gi|257126077|ref|YP_003164191.1| ATP-dependent protease ATP-binding subunit ClpX [Leptotrichia
           buccalis C-1013-b]
 gi|257050016|gb|ACV39200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           buccalis C-1013-b]
          Length = 409

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 158/428 (36%), Gaps = 87/428 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTG 63
             P+EI ++LD YIIGQ+  K+ +++A+ N ++R        D   EL   N+LLVGPTG
Sbjct: 63  LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKNVDNDVELQKSNVLLVGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  A   +         
Sbjct: 123 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAADYDI--------- 173

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                 AE  I+             +   K  R  E      D+        +       
Sbjct: 174 ----EAAEHGII-----------YIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGT 218

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            ASV      +  ++ M     K I   V   +  L     DR ++   V          
Sbjct: 219 VASVPPQGGRKHPNQEMIEINTKDILFIVGGAFEGLEAKVKDR-VNEKRV---------- 267

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIAS 301
                              G G+     + D L L E        K+G I          
Sbjct: 268 -------------------GFGLETNNTKLDDLTLFENVLPEDLIKFGLIPELIGRLPVI 308

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            A H                       L++     ILT+ +++L+ QYK+  + E + L+
Sbjct: 309 TALH----------------------GLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLE 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D+I  +A +A+        IGAR L++++E V+ D+ +        K V+I  E V 
Sbjct: 347 FEKDAITEIAQLALKRK-----IGARGLRSIIESVMTDLMYEIPSKDNVKKVIITKEAVT 401

Query: 421 LHIGDFPS 428
                   
Sbjct: 402 DKEKVIVE 409


>gi|225870476|ref|YP_002746423.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
 gi|254763864|sp|C0M9R7|CLPX_STRE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225699880|emb|CAW93774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           equi subsp. equi 4047]
          Length = 409

 Score =  235 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 164/430 (38%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y+IGQ+ AKRA+++A+ N ++R        D+   L   NIL++
Sbjct: 58  LTEVPKPKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMVQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N             +R   +     +E +  D+           K+G I        
Sbjct: 268 FGQN-------------SRKIDDNASYMQEIIAEDIQ----------KFGLIPEFIGRLP 304

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A       DL+                       ILT+  + L+ QY+ L+  +G+ 
Sbjct: 305 VVAALEQLNTEDLI----------------------RILTEPRNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEY 418
           L+F + +++A+A  A+   +     GAR L++++E  + DI F     +E   V I  E 
Sbjct: 343 LEFEKGALEAIAGRAIERKT-----GARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEA 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VEGQSKPILE 407


>gi|25011425|ref|NP_735820.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae NEM316]
 gi|76786965|ref|YP_329953.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77406716|ref|ZP_00783755.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
 gi|77411190|ref|ZP_00787542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77414070|ref|ZP_00790239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|46576576|sp|Q8E4L8|CLPX_STRA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123601634|sp|Q3K0K0|CLPX_STRA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24412963|emb|CAD47042.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562022|gb|ABA44606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae A909]
 gi|77159868|gb|EAO71010.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae 515]
 gi|77162808|gb|EAO73767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae CJB111]
 gi|77174679|gb|EAO77509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           agalactiae H36B]
          Length = 408

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 161/416 (38%), Gaps = 83/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG G
Sbjct: 63  KPKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 123 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYV- 181

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 182 ------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---------- 223

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++ M     K I   V   +  +      RL          I   +   
Sbjct: 224 -----GGRKHPNQEMIQINTKNILFIVGGAFDGIEDLVKQRL------GEKIIGFGQT-- 270

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                      +R   +     +E +  D+           K+G I           A  
Sbjct: 271 -----------SRKIDDNASYMQEIISEDIQ----------KFGLIPEFIGRLPVVAALE 309

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +    DL                        ILT+  + L+ QY+ L+  +G+ L+F +D
Sbjct: 310 LLTAEDL----------------------VRILTEPRNALVKQYQTLLSYDGVELEFDQD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           ++ A+AD A+   +     GAR L++++E  + DI F     ++ T V I    V 
Sbjct: 348 ALLAIADKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVE 398


>gi|153217715|ref|ZP_01951396.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 1587]
 gi|124113339|gb|EAY32159.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
           cholerae 1587]
          Length = 255

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 119/242 (49%), Positives = 159/242 (65%), Gaps = 13/242 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +     PG   +    L  LF   +    KKK +M ++     L+ +E+ +L++ + + 
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELK 240

Query: 235 RD 236
             
Sbjct: 241 EQ 242


>gi|255017245|ref|ZP_05289371.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL F2-515]
          Length = 181

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/181 (48%), Positives = 133/181 (73%)

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
           +++ G    VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+
Sbjct: 1   SKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPEL 60

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
           QGRFP+R+ L  L + DF  ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A  
Sbjct: 61  QGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQ 120

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFI 436
           +N    +IGARRL T++E++LED+ F A ++  +++ +   YV   +       D+  FI
Sbjct: 121 VNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFI 180

Query: 437 L 437
           L
Sbjct: 181 L 181


>gi|320546908|ref|ZP_08041210.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
 gi|320448426|gb|EFW89167.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           equinus ATCC 9812]
          Length = 409

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 164/417 (39%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R        +E   L   NILL+GPTG 
Sbjct: 63  KPKELLATLDEYVVGQERAKRALAVAVYNHYKRVSFADSRDEEDVELQKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 182

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 183 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 224

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 225 ------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKIIGFGQNN 272

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               +DE       D+     +  E +Q              K+G I           A 
Sbjct: 273 RK--IDE-------DASYMQEIISEDIQ--------------KFGLIPEFIGRLPVVAAL 309

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                 DL                        ILT+  + L+ QY+ L+  +G+ L+F E
Sbjct: 310 EQLTADDL----------------------VRILTEPRNALVKQYQTLLSYDGVELEFDE 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           D++ A+A+ A+   +     GAR L++++E  + DI F     +E T V I  + V 
Sbjct: 348 DALQAIANKAIKRKT-----GARGLRSIIEETMMDIMFEIPSREEVTKVRITKDAVE 399


>gi|254572115|ref|XP_002493167.1| Mitochondrial ATP-binding protein, possibly a mitochondrial
           chaperone with non-proteolytic function [Pichia pastoris
           GS115]
 gi|238032965|emb|CAY70988.1| Mitochondrial ATP-binding protein, possibly a mitochondrial
           chaperone with non-proteolytic function [Pichia pastoris
           GS115]
          Length = 600

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 172/455 (37%), Gaps = 91/455 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+++   LDR+I+GQ+  K+ +++A+   + R    A  R+                  
Sbjct: 122 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 181

Query: 50  -------------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                        +L   N+LL+GP+G GKT I++ LA+    PFI  + T  T+ GYVG
Sbjct: 182 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 241

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            ++E  I  L+  +   +    +        I   + I D L   +  + T+++  + ++
Sbjct: 242 EDIESCIEKLLIDSDYDIERCEK-------GIIVLDEI-DKLAKPSVYTGTKDIAGEGVQ 293

Query: 157 DGEISDKE-IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            G +   E   + V    S+  + +  G          E +                   
Sbjct: 294 QGLLKLVEGTTVTVQCKRSNAPDHNQFGLNGKATNQDKENYI------------------ 335

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
                            V   +I  +     V LD+   +  R   N IG   +  +   
Sbjct: 336 -----------------VDTTNILFLTLGAFVNLDKI--VAYRLKQNSIGFDTDESKD-- 374

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD-----LLPEIQGRFPVRVHLKSLN 330
             + E  SVS K               A  +    D     L+PE+ GR P+   L  L 
Sbjct: 375 --ISETDSVSDKSTLEYVTLPDGSKVSALELVSSTDLQNYGLIPELIGRLPIVSSLSPLT 432

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             D   +LT+  ++++ QY     T  + L  T  +I  +A++++   +     GAR L+
Sbjct: 433 VDDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIAEISIKNGT-----GARGLR 487

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
            ++E++L +  +         V++D + +   I +
Sbjct: 488 AILEKLLLNAKYDCPGSSISFVLVDTDVISKSIDE 522


>gi|297459396|ref|XP_001788707.2| PREDICTED: ClpX caseinolytic peptidase X homolog (E. coli) [Bos
            taurus]
          Length = 1795

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51   LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 1446 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 1505

Query: 111  INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               V ++++  V            LD                             +++  
Sbjct: 1506 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 1525

Query: 171  DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             +   I      GG  V    L         V     +K    +VQ              
Sbjct: 1526 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 1571

Query: 228  IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                 V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 1572 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 1624

Query: 288  YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
             G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 1625 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 1684

Query: 343  SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
            + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 1685 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 1739

Query: 403  SASDLQEKTVVIDAEYVRLH 422
               +     V +D E V   
Sbjct: 1740 EVPNSDIVCVEVDKEVVEGK 1759



 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12   IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
            I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 1334 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 1389

Query: 70   SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
             RR                        R  E     L+ +A                   
Sbjct: 1390 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 1412

Query: 130  AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                  +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 1413 ------NALGASVQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 1461

Query: 190  LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
              L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 1462 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 1513

Query: 244  YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
             GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 1514 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 1573

Query: 293  TDHILFIASGAFH 305
            T +ILF+ASGAF+
Sbjct: 1574 TTNILFVASGAFN 1586


>gi|319745297|gb|EFV97615.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 416

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 161/416 (38%), Gaps = 83/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+E++  L++Y++GQ  AKRA+A+A+ N ++R        D+  L   NIL++GPTG G
Sbjct: 71  KPKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSG 130

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R  +   
Sbjct: 131 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYV- 189

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +    I+  VA               
Sbjct: 190 ------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---------- 231

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                   +  ++ M     K I   V   +  +      RL          I   +   
Sbjct: 232 -----GGRKHPNQEMIQINTKNILFIVGGAFDGIEDLVKQRL------GEKVIGFGQT-- 278

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                      +R   +     +E +  D+           K+G I           A  
Sbjct: 279 -----------SRKIDDNASYMQEIISEDIQ----------KFGLIPEFIGRLPVVAALE 317

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           +    DL                        ILT+  + L+ QY+ L+  +G+ L+F +D
Sbjct: 318 LLTAEDL----------------------VRILTEPRNALVKQYQTLLSYDGVELEFDQD 355

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           ++ A+AD A+   +     GAR L++++E  + DI F     ++ T V I    V 
Sbjct: 356 ALLAIADKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVE 406


>gi|222152935|ref|YP_002562112.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
 gi|254763867|sp|B9DU73|CLPX_STRU0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222113748|emb|CAR41754.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           uberis 0140J]
          Length = 409

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 163/430 (37%), Gaps = 84/430 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+A+A+ N ++R        +E   L   NIL++
Sbjct: 58  LTEVPKPKELLDVLNQYVVGQDRAKRALAVAVYNHYKRISFSESRDEEEVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +  ++ M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE                +E +  D+           K+G I        
Sbjct: 268 FGQNSRK--IDE-----------DASYMQEIISDDIQ----------KFGLIPEFIGRLP 304

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A       DL+                       ILT  ++ L+ QY+ L+  +G+ 
Sbjct: 305 VVAALEQLNIDDLI----------------------QILTVPKNALVKQYQALLSYDGVE 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L F +D+++A+A  A+   +     GAR L++++E  + DI F     ++   V I  E 
Sbjct: 343 LSFDQDALEAIAAKAIERKT-----GARGLRSIIEETMLDIMFEIPSQEDVVKVRITKES 397

Query: 419 VRLHIGDFPS 428
           V         
Sbjct: 398 VNGDAKPILE 407


>gi|238021855|ref|ZP_04602281.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
 gi|237866469|gb|EEP67511.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147]
          Length = 426

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 181/430 (42%), Gaps = 83/430 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL-----MPKNILLVGPT 62
           +P E+V++L+ ++IGQ  AK+A+A+A+ N ++R + P + + EL        N+LL+GPT
Sbjct: 65  TPAELVAQLNEHVIGQDAAKKALAVAVYNHYKRLRQPENGKAELANVELSKSNVLLIGPT 124

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LAR    PF   + T  TE GYVG +VEQII  L+      V +++R  V
Sbjct: 125 GSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLGNCDFDVDKAQRGIV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I        + S TR+V  + ++   +   E  I          N +  
Sbjct: 185 Y-------IDEIDKISRKSDSPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRRNPN-- 235

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                      +  S                                   V   +I  + 
Sbjct: 236 ----------QQFIS-----------------------------------VDTSNILFIC 250

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
                 LD+   I  R    GIG               G+ V +K  + N    LF    
Sbjct: 251 GGAFAGLDKV--IRQRTEQGGIGF--------------GAQVHSKDDNANISE-LFAQVE 293

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
              + +   L+PE+ GR PV   L  L+++    ILT+ ++ L+ Q++ L   E   L F
Sbjct: 294 PEDLIK-FGLIPELIGRLPVLASLAELDEAALVRILTEPKNALVKQFQALFAMENADLQF 352

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
             D++ A+A +A+   +     GAR L++++ERVL +  ++  DL++   VV+  + V  
Sbjct: 353 EPDALAAIAALAMKRKT-----GARGLRSIVERVLLETMYALPDLKDVAKVVVTRDVVEN 407

Query: 422 HIGDFPSETD 431
           +        D
Sbjct: 408 NHAPVLYRAD 417


>gi|312865011|ref|ZP_07725239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
 gi|311099122|gb|EFQ57338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           downei F0415]
          Length = 400

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 161/417 (38%), Gaps = 84/417 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+E++  LD Y+IGQ  AKRA+A+A+ N ++R       +DE   L   NIL++GPTG 
Sbjct: 54  KPKELLQILDDYVIGQDRAKRALAVAVYNHYKRISFVESAQDEDVDLQKSNILMIGPTGS 113

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R  +  
Sbjct: 114 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFNIERAERGIIYV 173

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I          S TR+V  + ++   +    I+  VA              
Sbjct: 174 -------DEIDKIAKKGENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--------- 215

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    +  ++ M     K I   V   +  +      RL          I   +N 
Sbjct: 216 ------GGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRL------GEKVIGFGQN- 262

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
                              I      +Q+ +   ++      K+G I           A 
Sbjct: 263 ----------------NKSIDDDASYMQQIISEDIQ------KFGLIPEFIGRLPVLAAL 300

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                 DL                        ILT+ ++ L+ QYK L+  +G+ L+F +
Sbjct: 301 EQLTVEDL----------------------VRILTEPKNALVKQYKTLLSYDGVDLEFDQ 338

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           ++++A+A  A+   +     GAR L++++E  + DI F     ++ T V +    V 
Sbjct: 339 EALEAIAQKAIERKT-----GARGLRSIIEETMMDIMFEVPSQEDVTSVEVTKAAVE 390


>gi|260889842|ref|ZP_05901105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           hofstadii F0254]
 gi|260860448|gb|EEX74948.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia
           hofstadii F0254]
          Length = 391

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 158/428 (36%), Gaps = 87/428 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTG 63
             P+EI ++LD YIIGQ+  K+ +++A+ N ++R        D   EL   N+LLVGPTG
Sbjct: 45  LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKSIDNDVELQKSNVLLVGPTG 104

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  A   +         
Sbjct: 105 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAADYDI--------- 155

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                 AE  I+             +   K  R  E      D+        +       
Sbjct: 156 ----EAAEHGII-----------YIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGT 200

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            ASV      +  ++ M     K I   V   +  L     DR ++   V          
Sbjct: 201 VASVPPQGGRKHPNQEMIEINTKDILFIVGGAFEGLEAKVKDR-VNEKRV---------- 249

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIAS 301
                              G G+     + D L L E        K+G I          
Sbjct: 250 -------------------GFGLETNNTKLDDLTLFENVLPEDLIKFGLIPELIGRLPVI 290

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            A H                       L++     ILT+ +++L+ QYK+  + E + L+
Sbjct: 291 TALH----------------------GLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLE 328

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           F +D+I  +A +A+        IGAR L++++E V+ D+ +        K V+I  E V 
Sbjct: 329 FEKDAITEIAQLALKRK-----IGARGLRSIIESVMTDLMYEIPSKNNVKKVIITKEAVT 383

Query: 421 LHIGDFPS 428
                   
Sbjct: 384 DKEKVIVE 391


>gi|226491966|ref|NP_001147507.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
 gi|195611856|gb|ACG27758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays]
          Length = 559

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 165/432 (38%), Gaps = 89/432 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+EI   LD+++IGQQ AK+ +++A+ N ++R    + +                    
Sbjct: 140 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLINRSAADCSQSDSCTSDTDMV 199

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 200 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLAA 259

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A   V  +++  V            +D +   T  + +  + R             D+  
Sbjct: 260 ADFDVAAAQQGIVY-----------IDEVDKITKKAESINLSR-------------DVSG 295

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                 +         SV                  K I       + +L +        
Sbjct: 296 EGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEK------TI 349

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
            +  H  SI                 V  +  +G  ++ E     L  +  G  ++  YG
Sbjct: 350 SERRHDSSIGFRAQ------------VRSNMRSGGVINAEITSSLLKSVESGDLIA--YG 395

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            I      F               P + G       L SL++     +LT+ ++ L  QY
Sbjct: 396 LIPEFVGRF---------------PILVG-------LSSLSEDQLVEVLTEPKNALGRQY 433

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +L +   + L FTE+++  +A  A++ N+     GAR L++++E +L +  +   + + 
Sbjct: 434 TKLFEMNDVKLHFTEEALRLIAKRAISKNT-----GARGLRSILESILTEAMYEIPETRI 488

Query: 410 KTVVIDAEYVRL 421
               IDA  V  
Sbjct: 489 GKDKIDAVVVDE 500


>gi|56707750|ref|YP_169646.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670221|ref|YP_666778.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456820|ref|ZP_03665293.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370253|ref|ZP_04986259.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874563|ref|ZP_05247273.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|61211391|sp|Q5NH46|CLPX_FRATT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56604242|emb|CAG45258.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320554|emb|CAL08641.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568497|gb|EDN34151.1| hypothetical protein FTBG_01378 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840562|gb|EET18998.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158921|gb|ADA78312.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 417

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 171/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNS- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  D                         ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEED----------------------LVRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPSET 430
              +  
Sbjct: 401 PILATK 406


>gi|187931472|ref|YP_001891456.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712381|gb|ACD30678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 417

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 167/420 (39%), Gaps = 84/420 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R+                  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHRM------------------ 255

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIASGA 303
                  DK+     G    V+++    D   L++       T++G I            
Sbjct: 256 -------DKV---SIGFNADVTQQKNSLDSDKLMQKIESEDLTRFGLIPELIGRLPIVTV 305

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
            +  +  D                         ILT+ ++ LI QY +L K + + ++FT
Sbjct: 306 LNELKEED----------------------LVRILTEPKNALIKQYIKLFKFDNVNIEFT 343

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +   
Sbjct: 344 DQALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQ 398


>gi|62260894|gb|AAX77944.1| unknown protein [synthetic construct]
          Length = 452

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 171/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 84  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 143

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 144 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 201

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 202 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 252

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 253 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNS- 290

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 291 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 333

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  D                         ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 334 ELKEED----------------------LVRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 371

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 372 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 426

Query: 425 DFPSET 430
              +  
Sbjct: 427 PILATK 432


>gi|118497647|ref|YP_898697.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis
           subsp. novicida U112]
 gi|194323618|ref|ZP_03057394.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. novicida FTE]
 gi|118423553|gb|ABK89943.1| ATP-dependent Clp protease subunit X [Francisella novicida U112]
 gi|194321982|gb|EDX19464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. novicida FTE]
          Length = 417

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 172/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPSET 430
              +  
Sbjct: 401 PILATK 406


>gi|254374462|ref|ZP_04989943.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548]
 gi|151572181|gb|EDN37835.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548]
 gi|332678355|gb|AEE87484.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella
           cf. novicida Fx1]
          Length = 417

 Score =  232 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 172/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPSET 430
              +  
Sbjct: 401 PILATK 406


>gi|168054446|ref|XP_001779642.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668956|gb|EDQ55553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 293

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 20/307 (6%)

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS- 193
           +D            E FR+  RDG + +++I +++ D  S +   +I G +  G+  L  
Sbjct: 3   IDGESPVPEARVDYEAFRQLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVF 61

Query: 194 --ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
                 K + S R +++ +++    P L   E ++ +++D + +D+I + E+ GIVF+DE
Sbjct: 62  RLPQMEKFLKSQRMERMEITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDE 121

Query: 252 FDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
            DKIV       G   S EGVQRDLLP++EG                     A    +  
Sbjct: 122 IDKIVTNHETRYGADASSEGVQRDLLPIIEGRVS---------------LPVACQSDKST 166

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
           D+L E+QGR P+RV LK L + D   ILT+ E+N+I Q + LMKTE I L FT+D+I+ L
Sbjct: 167 DMLAELQGRLPIRVELKGLGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEEL 226

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSET 430
           A VA  +N +V +IGARRL TV+ERV+EDISF A +   +T  ID E V+  +GDF  + 
Sbjct: 227 AKVAAEVNRSVDNIGARRLHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKA 286

Query: 431 DMYHFIL 437
           D+  F+L
Sbjct: 287 DLSRFVL 293


>gi|89256250|ref|YP_513612.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica LVS]
 gi|156502311|ref|YP_001428376.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010853|ref|ZP_02275784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367563|ref|ZP_04983589.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica 257]
 gi|254369240|ref|ZP_04985252.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144081|emb|CAJ79332.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253379|gb|EBA52473.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica 257]
 gi|156252914|gb|ABU61420.1| ATP-dependent Clp protease, ATP-binding subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122190|gb|EDO66330.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 417

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 172/424 (40%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPS 428
              +
Sbjct: 401 PILA 404


>gi|208779708|ref|ZP_03247052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           novicida FTG]
 gi|254373012|ref|ZP_04988501.1| hypothetical protein FTCG_00586 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570739|gb|EDN36393.1| hypothetical protein FTCG_00586 [Francisella novicida GA99-3549]
 gi|208744163|gb|EDZ90463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           novicida FTG]
          Length = 417

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 172/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVSIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPSET 430
              +  
Sbjct: 401 PILATK 406


>gi|153871108|ref|ZP_02000361.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
 gi|152072424|gb|EDN69637.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
          Length = 429

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 170/422 (40%), Gaps = 86/422 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--------LRDELMPKNILLV 59
           +P  + ++LD Y+IGQ+ AK  + +A+ N ++R              L  E+   N+L++
Sbjct: 64  TPAAMKAQLDDYVIGQELAKEILTVAVYNHYKRLYHKTTPNHFDKLYLDVEIGKSNVLML 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GP+G GKT ++  LA++ G PF+  + T  T+ GYVG +VE I+  L+DVA   ++    
Sbjct: 124 GPSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVESILLRLLDVAKGKIKR--- 180

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                     AE  I+                            EID     + S +   
Sbjct: 181 ----------AEWGII-------------------------YIDEIDKIARASKSAMVER 205

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           D+ G        + +   K++     K             +    +R+ D  T   D+ Q
Sbjct: 206 DVSG------EGVQQALLKLVEGTTVK-------------IPQSKERMRDNGTSIMDTSQ 246

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           ++   G  F+   +++  R       +S +  Q      VE +                +
Sbjct: 247 ILFIAGGAFVGLEEQVAKR-------ISAKQTQIGFHAQVEKTD--------KITAERLL 291

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                   R   L+PE  GRFP+   L+ L+++    ILT+  + L+ QY++L   E + 
Sbjct: 292 QETQPEDLRRFGLIPEFIGRFPILAILEDLDETALVRILTEPRNALVRQYQKLFAYENVE 351

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+FT  ++ A     +   +     GAR L+ + E++L    F     Q+    ++D E 
Sbjct: 352 LEFTAKALAA-----IAKKALAQGTGARGLRNIQEQLLRRCMFELPSRQDIVRCIVDEEA 406

Query: 419 VR 420
           V 
Sbjct: 407 VN 408


>gi|147791350|emb|CAN75136.1| hypothetical protein VITISV_040753 [Vitis vinifera]
          Length = 600

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 170/456 (37%), Gaps = 109/456 (23%)

Query: 3   LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------- 45
           L  NF +P+EI   LD+++IGQ+ AK+ +++A+ N ++R    +                
Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHZSLQKCDPTWRIRPAEDT 218

Query: 46  ---------DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI----------KVEV 86
                    +   EL   NILL+GPTG G T     +       F            +  
Sbjct: 219 SDDKAEATDNDSVELEKSNILLMGPTGSGSTGSLSIIMLFLITWFTWYFHFFKDREDITC 278

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN 146
                 GYVG +VE I+  L+ VA   V  +++  V            +D +   T  + 
Sbjct: 279 QNLGTAGYVGEDVESILYKLLMVADYNVVAAQQGIVY-----------IDEVDKITKKAE 327

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
           +  + R                                  V    + +   K++      
Sbjct: 328 SLNLSR---------------------------------DVSGEGVQQALLKMLEGTV-- 352

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
            + +  +        D          +  D+  ++   G  F+D    I  R   + IG 
Sbjct: 353 -VNVPEKGARKHPRGD---------NIQIDTKDILFICGGAFIDLEKTISERRQDSSIGF 402

Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINT-DHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325
                 R  +     +  +     + T +    I+ G         L+PE  GRFP+ V 
Sbjct: 403 GAP--VRANMRTGGPTXAAVASSLLETVESSDLISYG---------LIPEFVGRFPILVS 451

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L ++    +LT+ ++ L  QYK++ +  G+ L FT++++  ++  A + N+     G
Sbjct: 452 LSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAXSKNT-----G 506

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           AR L++ +E +L B  +   D++    +IDA  V  
Sbjct: 507 ARGLRSXLENILMBAMYEIPDVRTGNDIIDAVVVDD 542


>gi|134302068|ref|YP_001122037.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049845|gb|ABO46916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 417

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 171/426 (40%), Gaps = 80/426 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ L +L   PF   + T  TE GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLVKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPSET 430
              +  
Sbjct: 401 PILATK 406


>gi|262340994|ref|YP_003283849.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272331|gb|ACY40239.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 401

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 173/419 (41%), Gaps = 95/419 (22%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPTGVGKTA 68
           S LD++++ Q +AK+ +++A+ N ++R      Q   +   E+   NILL+G TG GKT 
Sbjct: 67  SFLDKHVVEQNEAKKILSVAVYNHYKRILHSKNQKNENEDVEIEKSNILLIGNTGTGKTL 126

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++R +++L   PF   + T  TE GYVG +VE I+  L+      +              
Sbjct: 127 LARSISKLLKVPFAIADATTLTEAGYVGEDVESILTKLLQSVDYDIN------------- 173

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +AE+ I+                            EID +++  +++ S      G  V 
Sbjct: 174 SAEKGII-------------------------FLDEID-KISRKNNNPSITRDVSGEGVQ 207

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  L   V+    +   +   QK  P               ++ ++I  +       
Sbjct: 208 QALLKILEGSVINVPPQGGRKHPDQKMIP---------------INTENILFIAGGTF-- 250

Query: 249 LDEFDKIVA-RDSGNGIGV---SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
            D  +KIV+ R     IG     R     + L  +           I+TD   F      
Sbjct: 251 -DGIEKIVSDRIEKIPIGFLTQERVKKNNNYLKNI-----------ISTDLKNF------ 292

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GRFPV  +L  LNK+  + IL + ++ LI QY++L   + I ++ T+
Sbjct: 293 ------GLIPELIGRFPVITYLHPLNKNMLKRILLEPKNALIKQYQKLFNMDNISMNITD 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
            ++D +AD    +      +GAR L+T  E++  D  +   +  +  + ID   V   I
Sbjct: 347 KALDVIADKTFQVG-----LGARGLRTFCEKIFLDYMYDI-EKTQPVLNIDENIVMNKI 399


>gi|313680147|ref|YP_004057886.1| ATP-dependent clp protease ATP-binding subunit clpx [Oceanithermus
           profundus DSM 14977]
 gi|313152862|gb|ADR36713.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
          Length = 398

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/420 (23%), Positives = 160/420 (38%), Gaps = 88/420 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + LD Y+IGQ++AK+ +A+A+ N ++R Q P     EL   N+LL+GPTG GKT 
Sbjct: 60  PAEIKAFLDDYVIGQEEAKKVLAVAVYNHYKRLQHPE---AELGKSNVLLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A   V              
Sbjct: 117 LAETLARQLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYNV-------------E 163

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
            AE  I+                            EID ++A  S   S      G  V 
Sbjct: 164 AAERGII-------------------------YIDEID-KIARKSEGPSITRDVSGEGVQ 197

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  +   V     +   +   Q+                  ++  +I  +       
Sbjct: 198 QALLKIIEGTVANVPPQGGRKHPHQETI---------------ALNTRNILFILGGAFDG 242

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           L+   K  AR     IG   +  +   L ++    V  KYG I             H   
Sbjct: 243 LEAIVK--ARTDQTPIGFRTQAPEAGTLEVIPEDLV--KYGLIPEFVGRVPVIVQLHELS 298

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
             DL+                       ILT+ ++ L+ QY+ L + EG+ L+ TE ++ 
Sbjct: 299 EDDLV----------------------RILTEPKNALVRQYRTLFELEGVNLEITEAALR 336

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
            +A  A+   +     GAR L++V+ER + D+ +       + +  DA ++   +     
Sbjct: 337 EVARRALERGT-----GARGLRSVIERAMVDLMYEVPASGVRELRFDAPHLDEPLEALRE 391


>gi|295838902|ref|ZP_06825835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
 gi|197695454|gb|EDY42387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
          Length = 428

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 162/425 (38%), Gaps = 86/425 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPSGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +   E       +        
Sbjct: 183 IIY-------IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGT---TASVPPQGGRK 232

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            P    + I   + LF               V   +  L R      I         I  
Sbjct: 233 HPHQEFIQIDTTNVLF--------------IVGGAFSGLER------IIEARAGAKGIGF 272

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                         I ++         RE +  DL           K+G I         
Sbjct: 273 GAT-----------IRSKREIESSDHLREVMPEDL----------VKFGMIPEFIGRLPV 311

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             + H      LL  +                       +    L+ QY+ L + +G+ L
Sbjct: 312 VTSVHSLDREALLRILV----------------------EPRHALVKQYQRLFELDGVEL 349

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +F  ++++A+AD A+   +     GAR L+ +ME VL+ + +     Q+   VVI A+ V
Sbjct: 350 EFEHEALEAIADQAILRQT-----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVV 404

Query: 420 RLHIG 424
           R ++ 
Sbjct: 405 RSNVN 409


>gi|157149993|ref|YP_001450429.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262282292|ref|ZP_06060060.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
 gi|189044157|sp|A8AXB9|CLPX_STRGC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157074787|gb|ABV09470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|262261583|gb|EEY80281.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 409

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 159/422 (37%), Gaps = 84/422 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L+    P+E++  L+ Y+IGQ+ AKRA+A+A+ N ++R        +   EL   NIL++
Sbjct: 58  LSEVPKPQELLHILNHYVIGQERAKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 118 GPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +    I+  VA         
Sbjct: 178 GIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ---- 224

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                         +   + M     K I   V   +  +      RL          I 
Sbjct: 225 -----------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKIIG 267

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
             +N     +DE       +      +  E +Q              K+G I        
Sbjct: 268 FGQNNKA--IDE-------NESYMQAIIAEDIQ--------------KFGIIPELIGRLP 304

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              A       D                         IL + ++ L+ QY+ L+  + + 
Sbjct: 305 VFAALEQLTVDD----------------------LVRILREPKNALVKQYQALLSYDDVK 342

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEY 418
           L+F +D++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E 
Sbjct: 343 LEFDDDALQEIANKAIERKT-----GARGLRSIIEETMMDVMFEVPSKENVKLVRITKEA 397

Query: 419 VR 420
           V 
Sbjct: 398 VD 399


>gi|302519064|ref|ZP_07271406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|318060126|ref|ZP_07978849.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actG]
 gi|318076384|ref|ZP_07983716.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actF]
 gi|333027109|ref|ZP_08455173.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
 gi|302427959|gb|EFK99774.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|332746961|gb|EGJ77402.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
          Length = 428

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 162/425 (38%), Gaps = 86/425 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPTGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +         + I          S TR+V  + ++   +   E       +        
Sbjct: 183 IIY-------IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGT---TASVPPQGGRK 232

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            P    + I   + LF               V   +  L R      I         I  
Sbjct: 233 HPHQEFIQIDTTNVLF--------------IVGGAFSGLER------IIEARAGAKGIGF 272

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                         I ++         RE +  DL           K+G I         
Sbjct: 273 GAT-----------IRSKREIESSDHLREVMPEDL----------VKFGMIPEFIGRLPV 311

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             + H      LL  +                       +    L+ QY+ L + +G+ L
Sbjct: 312 VTSVHSLDREALLRILV----------------------EPRHALVKQYQRLFELDGVEL 349

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +F  ++++A+AD A+   +     GAR L+ +ME VL+ + +     Q+   VVI A+ V
Sbjct: 350 EFEHEALEAIADQAILRQT-----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVV 404

Query: 420 RLHIG 424
           R ++ 
Sbjct: 405 RSNVN 409


>gi|223934536|ref|ZP_03626457.1| ATPase AAA-2 domain protein [bacterium Ellin514]
 gi|223896999|gb|EEF63439.1| ATPase AAA-2 domain protein [bacterium Ellin514]
          Length = 530

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 174/435 (40%), Gaps = 87/435 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVG 60
             F + PR+I + LDR++I Q +AK+ +++AL + +   R             +NI+L+G
Sbjct: 56  FKFEYKPRDIKAYLDRFVIQQDEAKKVLSVALCDHYHQVRLAFEGKETPNYAKQNIILIG 115

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT + R +A L G PF+K + TKF+E GYVG +VE ++R+L   A      ++  
Sbjct: 116 PTGVGKTYLIRSVADLIGVPFVKGDATKFSETGYVGGDVEDLVRELYRRADGDADRAQYG 175

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            +                                         EID ++A  SS      
Sbjct: 176 II--------------------------------------YIDEID-KIAAASSSTGRDV 196

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G    +L L E                 VQ   P+ +  +   ++DM    + S   
Sbjct: 197 SGRGVQTNLLKLME--------------ETEVQTRSPQDIAGQIQAMMDMSQRGKKSASS 242

Query: 241 VENYGIVFL-----DEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +    I+F+     D  DK+V R          ++E  +   + ++E +           
Sbjct: 243 INTRHILFIVSGAFDGLDKLVRRRLREATIGFAAKETKEETEIQVLEQA----------- 291

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
               FI  G           PE  GR PVRV  +SL   D   IL  +E ++I QY++  
Sbjct: 292 QTKDFIDFG---------FEPEFIGRLPVRVICQSLGVDDLFAILKSSEGSIIRQYEQSF 342

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
              GI + F ED +  +A++A          GAR L TV ERV  +I F     Q K  +
Sbjct: 343 AAYGIEVFFREDGLRRIAELAA-----GEGTGARGLMTVCERVFRNIKFQLPSTQVKRFL 397

Query: 414 IDAEYVRLHIGDFPS 428
           +  E V     +   
Sbjct: 398 VTRELVDNPAEELQK 412


>gi|319946999|ref|ZP_08021233.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
 gi|319747047|gb|EFV99306.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           australis ATCC 700641]
          Length = 410

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 160/431 (37%), Gaps = 85/431 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L+    P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     +  D+    L   NIL+
Sbjct: 58  LSEVPKPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHENREDDNDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 118 VGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAE 177

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +    I+  VA        
Sbjct: 178 RGIIYV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + M     K I   V   +  +      RL          I
Sbjct: 226 ------------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKII 267

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +N     +DE        S     +  E +Q              K+G I       
Sbjct: 268 GFGKNNKA--IDE-------SSSYMQEIIAEDIQ--------------KFGIIPELIGRL 304

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
               A       DL                        IL +  + L+ QY+ L+  + +
Sbjct: 305 PVLAALEQLTVDDL----------------------VRILKEPRNALVKQYQALLSFDDV 342

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAE 417
            L+F +++++ +A  A+   +     GAR L++++E  + D+ F     ++  +V I  E
Sbjct: 343 ELEFDDEALEEIASKAIERKT-----GARGLRSIIEETMLDVMFEVPSQEDVKLVRITKE 397

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 398 AVNGTEKPILE 408


>gi|254756020|ref|ZP_05208051.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 178

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/177 (49%), Positives = 129/177 (72%)

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
            N + VSREGVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+P +QGRF
Sbjct: 2   SNSVDVSREGVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPXLQGRF 61

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L  L+  DF  IL + ++ LI QY  L+ TEGI ++F++++I  +A++A  +N  
Sbjct: 62  PIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQD 121

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
             +IGARRL T+ME++LED+SF AS++  + + I  +YV   +       D+  FIL
Sbjct: 122 TDNIGARRLHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 178


>gi|239907452|ref|YP_002954193.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
 gi|239797318|dbj|BAH76307.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio
           magneticus RS-1]
          Length = 417

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 163/428 (38%), Gaps = 88/428 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R            E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGSAGADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + +  + 
Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIESASKGIIY 181

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I        + S TR+V  +                              
Sbjct: 182 -------IDEIDKIARKGDSPSITRDVSGE------------------------------ 204

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G    +L + E     +     +K             + E  RL      +  +I  +  
Sbjct: 205 GVQQALLKIIEGTEANIPPKGGRKHP-----------QQEFIRL------NTANILFIVG 247

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREG-VQRDLLPLVEGSSVS--TKYGSINTDHILFIA 300
              + LD+      R S  G G   E     DL  L+  +  +   K+G I         
Sbjct: 248 GAFIGLDKIVGQRQRGSAMGFGAKVEAKSDDDLSKLLTQAHPADLIKFGLIPEFVGRIPI 307

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
             +       DL+     R         L +          ++ L+ QY++L + + + L
Sbjct: 308 LTSLEELTQTDLV-----RI--------LTE---------PKNALVKQYQKLFELDKVRL 345

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            F+++++DA+A  A+   +     GAR L+ VME ++ DI +    L   K  VI+   V
Sbjct: 346 RFSKNALDAIAQKAIERKT-----GARGLRNVMESIMLDIMYKLPSLTGVKECVINKAVV 400

Query: 420 RLHIGDFP 427
              I    
Sbjct: 401 EKGIEPLL 408


>gi|256850970|ref|ZP_05556359.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661184|ref|ZP_05862098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934115|ref|ZP_06339393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|297205852|ref|ZP_06923247.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616032|gb|EEU21220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548121|gb|EEX24097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301729|gb|EFA93995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           jensenii 208-1]
 gi|297148978|gb|EFH29276.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           jensenii JV-V16]
          Length = 427

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 165/425 (38%), Gaps = 80/425 (18%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILL 58
           +K T +   P EI  +LD Y++GQ  AK+ +++A+ N ++R  Q+  D   EL   NI L
Sbjct: 56  LKETKDLPKPVEIKKQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIAL 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++
Sbjct: 116 IGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAQ 175

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  +         + I          S TR+V  + ++   +   E  I           
Sbjct: 176 RGIIY-------IDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGG--- 225

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                          +   + +     K I   V   +  +        I    + + +I
Sbjct: 226 --------------RKHPQQELIKIDTKNILFIVGGAFDGIEG------IVKSRLGKKTI 265

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
                      DEFD                        L  G  V  K+G I       
Sbjct: 266 GFGAESKF---DEFD---------------HDADSWNKYLTTGDLV--KFGLIPEFIGRI 305

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    + ADL+     R         L +          ++ L+ QY++L + + +
Sbjct: 306 PVISTLDKLQKADLI-----RI--------LTE---------PKNALVKQYQKLFEIDKV 343

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAE 417
            L F++ +++A+++ A+  N     +GAR L+T++E  + D  ++    ++   V I  +
Sbjct: 344 NLHFSDGALEAISEQALERN-----MGARGLRTIIENAMMDTMYTIPSEKDVAKVEITRD 398

Query: 418 YVRLH 422
            +  H
Sbjct: 399 VITKH 403


>gi|115314707|ref|YP_763430.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella
           tularensis subsp. holarctica OSU18]
 gi|115129606|gb|ABI82793.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
          Length = 417

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 172/424 (40%), Gaps = 80/424 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P EI   LD YIIGQ +AK+ +++A+ N ++R    L  D   EL   N+LL+GPTG G
Sbjct: 58  KPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKRSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT  ++ LA+L   PF   + T  T+ GYVG +VE II  L+  A   V ++++  +   
Sbjct: 118 KTLFAQTLAKLLNVPFAIADATTLTKAGYVGDDVENIIVRLLQNADFDVAKAQKGIIY-- 175

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I        +TS TR+V  + ++   +      IE   +S            
Sbjct: 176 -----IDEIDKIARKSESTSITRDVSGEGVQQALLKL----IEGTVSSVPPKGGRKHPNQ 226

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            +  ++ S++                    +  + +    R   MD V      +  N  
Sbjct: 227 DMIQVDTSDIL-------------FICGGAFAGIEKVIKHR---MDKVS-----IGFNA- 264

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
                  D I  ++S +   + ++    DL          T++G I             +
Sbjct: 265 -------DVIQQKNSLDSDKLMQKIESEDL----------TRFGLIPELIGRLPIVTVLN 307

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +  DL                        ILT+ ++ LI QY +L K + + ++FT+ 
Sbjct: 308 ELKEEDL----------------------VRILTEPKNALIKQYIKLFKFDNVNIEFTDQ 345

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A  A+   +     GAR L+T++E VL ++ F     ++ + V+I+ + +     
Sbjct: 346 ALVEIAKKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDIEKVIINDKVILEQQE 400

Query: 425 DFPS 428
              +
Sbjct: 401 PILA 404


>gi|221504177|gb|EEE29852.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii VEG]
          Length = 357

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 143/236 (60%), Gaps = 3/236 (1%)

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
            +K +++V++    +    ++ + D +TV   +    EN GIVF+DEFDK+V   SG+  
Sbjct: 122 PQKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAENRGIVFIDEFDKLVEERSGSDS 181

Query: 265 GVSRE---GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321
              R    GVQR+LL L+EG+SV T+ G INTDH+LFIASG+F   +P+D++PE+QGR P
Sbjct: 182 SAFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIASGSFLACKPSDIIPELQGRLP 241

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +R  LK L + +F  ILT+TE NL+ Q   L+ TEG+ L F E  +  +A  + +LN+  
Sbjct: 242 IRCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKLIFEESGVREIARTSHHLNTMN 301

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            ++GARRL+TV+ +VLE   F A   Q   V +  E V   +     + D+  +IL
Sbjct: 302 ANVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVEERLRPLMEQADLCKYIL 357


>gi|195494256|ref|XP_002094759.1| GE20032 [Drosophila yakuba]
 gi|194180860|gb|EDW94471.1| GE20032 [Drosophila yakuba]
          Length = 812

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 178/475 (37%), Gaps = 140/475 (29%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-------------- 54
           P++I+  LD++++GQ+ AK+ +A+A+ N ++R       R     +              
Sbjct: 370 PQKIMEYLDKHVVGQELAKKVLAVAVYNHYKRIHSNMQQRKPTKQEKANNAIDTLSLHQL 429

Query: 55  NI---------------LLVGPTGVGKT-------------------------------- 67
           NI               L+   +G G T                                
Sbjct: 430 NISGDSFMLNSSSKEKDLIHFGSGEGSTTFNWNFPDIKSNDVILEKSNIMMLGPTGSGKT 489

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I++ +A+    PF   + T  T+ GYVG ++E ++  L+  A N V  ++   V     
Sbjct: 490 LIAKSIAKCLDVPFAICDCTSLTQAGYVGEDIESVLLKLLQDANNDVERAQTGIVYL--- 546

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  +D +   + T   R++  + ++ G +   E                   G+ V
Sbjct: 547 -----DEVDKICALSGTKQRRDIGGEGVQQGMLKILE-------------------GSVV 582

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
            +++ S+ F K                             + MDT    +I  V +    
Sbjct: 583 SLIDRSQQFRK-----------------------------VQMDT---TNILFVASGAYT 610

Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            LD+   I  R +     V+              S         +          A  ++
Sbjct: 611 ALDKI--IARRLNEKDSDVA------------PTSGALPPDADQHKRDKCLSKVQACDLA 656

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               ++PE  GRFP+ V   SLN +    ILT+  S L+ QYK L++ +G+ L F+ED++
Sbjct: 657 E-FGMIPEFVGRFPILVPFHSLNANMLVRILTEPRSALVSQYKALLRLDGVDLTFSEDAL 715

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           +++A +A+ +N+     GAR L+++ME++L D  FS      + V I A+ V   
Sbjct: 716 ESVAQLAIEMNT-----GARGLRSIMEQLLLDPMFSVPGSDIRGVHITADNVMGK 765


>gi|281356560|ref|ZP_06243051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis
           vadensis ATCC BAA-548]
 gi|281316687|gb|EFB00710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis
           vadensis ATCC BAA-548]
          Length = 442

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/429 (23%), Positives = 167/429 (38%), Gaps = 92/429 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----------RDELMPKNIL 57
           SP EI +ELD+Y+IGQ+ AKR +A+A+ N ++R Q  A +            EL   N+L
Sbjct: 75  SPAEIKAELDQYVIGQERAKRVLAVAVHNHYKRLQTQAGVHTSAARDLFSDVELDKSNVL 134

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++R LARL   PF   + T  TE GYVG +VE II  L   + + V  +
Sbjct: 135 LLGPTGSGKTLLARTLARLLDVPFAICDATTLTEAGYVGEDVENIILRLFQASGSNVERT 194

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +      DE+ + A       I   + G+       ++    + +          +    
Sbjct: 195 QIGIIYVDEIDKIARKTENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFL 254

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             D SN     G +             +    +++    V      +  +     +D + 
Sbjct: 255 RIDTSNILFICGGAFVG----------LDKIIQRRCGKQVLGFKRLVDDEAEQAELDAEH 304

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           + ++     E   ++                                       ++G I 
Sbjct: 305 LAKNPYAKCEPEDLI---------------------------------------RFGLIP 325

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                     +    R  DL+                       IL + ++ LI QY+ L
Sbjct: 326 EFVGRLPVVTSLEPLRKEDLI----------------------RILKEPKNALIRQYQRL 363

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
           +  EG+ L+FTED+++ALAD AV   +     GAR L+ ++E ++ D+ F A   +    
Sbjct: 364 LGMEGVTLEFTEDALEALADKAVARGT-----GARGLRAILEEMMVDVMFDAPSREGISR 418

Query: 412 VVIDAEYVR 420
            VID   +R
Sbjct: 419 CVIDGAVIR 427


>gi|170088152|ref|XP_001875299.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650499|gb|EDR14740.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 491

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 166/460 (36%), Gaps = 96/460 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----------------LPADLRDE 50
           +PRE+V  L+++I+GQ++AK+ +++A+ N + R +                 +P D R  
Sbjct: 51  TPRELVEYLNQFIVGQENAKKVLSVAVYNHYNRVRANLAFEADEIETNNTRDVPPDSRSG 110

Query: 51  LM--------------------------PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +                             N+L++GPTG GKT +++ LA++   PF   
Sbjct: 111 VASARIRPLRKQASPLSLSARRMVPLFEKSNVLVIGPTGSGKTLLAKTLAKVLDVPFSVS 170

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT 144
           + T FT+ GYVG + +  I+ L+  A     ++          I  +E    A    T T
Sbjct: 171 DATSFTQAGYVGEDADMAIQRLLQAANWNPLQASM------GIIYIDEIDKIARKSSTGT 224

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS----VGILNLSELFSKVM 200
             +R+V  + ++   +   E  +        +     P G       G            
Sbjct: 225 EGSRDVGGEGVQQALLRMMEGSVVTVQAKGAVYAEAAPSGGEGHSRSGQRPSQATPKPDT 284

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
                  +   +   +  L     D++I    V + SI    N      D          
Sbjct: 285 YQIDTSNVLFILSGAFVGL-----DKVIKQ-RVAKGSIGFTANLTSTDGD---------G 329

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
                      Q ++L LVE S +  KYG                       +PE   R 
Sbjct: 330 PLPFFTPNRKTQHNILDLVETSDL-VKYG----------------------FIPEFISRL 366

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P    L  L  SD + ILT+ + +L+ QY+ L    G+ + FT  ++D +   A +    
Sbjct: 367 PSITALSPLTVSDLKRILTEVKGSLMSQYQSLFGYSGVEIRFTSAALDEICQKAFDRGGG 426

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
              +     + +ME +L +  +         V+I  + V+
Sbjct: 427 ARGL-----RGIMESLLLEPMYEVPGSDICHVLITEDVVK 461


>gi|328352816|emb|CCA39214.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pichia
           pastoris CBS 7435]
          Length = 565

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 172/454 (37%), Gaps = 106/454 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +P+++   LDR+I+GQ+  K+ +++A+   + R    A  R+                  
Sbjct: 104 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 163

Query: 50  -------------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                        +L   N+LL+GP+G GKT I++ LA+    PFI  + T  T+ GYVG
Sbjct: 164 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 223

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            ++E  I  L+  +   +         E+  I  +E  +D L   +  + T+++  + ++
Sbjct: 224 EDIESCIEKLLIDSDYDIERC------EKGIIVLDE--IDKLAKPSVYTGTKDIAGEGVQ 275

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                                                 LF   +  G             
Sbjct: 276 ------------------------------------QGLFKNWLKFGLN----------G 289

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
               +D+ + ++D       +I  +     V LD+   +  R   N IG   +  +    
Sbjct: 290 KATNQDKENYIVD-----TTNILFLTLGAFVNLDKI--VAYRLKQNSIGFDTDESKD--- 339

Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNK 331
            + E  SVS K               A  +    DL     +PE+ GR P+   L  L  
Sbjct: 340 -ISETDSVSDKSTLEYVTLPDGSKVSALELVSSTDLQNYGLIPELIGRLPIVSSLSPLTV 398

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D   +LT+  ++++ QY     T  + L  T  +I  +A++++   +     GAR L+ 
Sbjct: 399 DDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIAEISIKNGT-----GARGLRA 453

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++E++L +  +         V++D + +   I +
Sbjct: 454 ILEKLLLNAKYDCPGSSISFVLVDTDVISKSIDE 487


>gi|262199990|ref|YP_003271199.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
 gi|262083337|gb|ACY19306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
          Length = 402

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 167/419 (39%), Gaps = 85/419 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP EIV ELDRY++GQ  AKRA+++A+ N ++R  +     D EL   NILL+GPTG GK
Sbjct: 52  SPHEIVGELDRYVVGQGRAKRALSVAVYNHYKRIGMRGKSADVELQKGNILLIGPTGCGK 111

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA+    PF   + T  TE GYVG +VE +I+ L   A   V ++ R       
Sbjct: 112 TLLAQTLAKKLDVPFAIADATTLTEAGYVGEDVESVIKALFRAAGGDVEKTARG------ 165

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                  IL                            EID       S     D+ G   
Sbjct: 166 -------IL-------------------------CIDEIDKIARKGGSPSPTRDVSG--- 190

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                + +   K++     K   ++         ++    LI +DT     I  +     
Sbjct: 191 ---EGVQQALLKILEG---KTATITPDGARNRPQQE----LIQIDT---TDILFICTGAF 237

Query: 247 VFLDEF--DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             L++    ++  R  G G  +      +D L     +   TK+G I          G  
Sbjct: 238 NGLEDIVRRRVGERGLGFGAAIGTAQDDKDALRATARAEDLTKFGMIPE------FMGRL 291

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            V    D L            +  L++     +L   ++ L  QY+ L   E + L FT+
Sbjct: 292 PVVVSCDALG-----------VDELSE-----VLWRPKNALSRQYERLFALEDVKLTFTQ 335

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D++ A+A+ A    S     GAR L+ ++E ++ D+ +    L   K  V++ + V   
Sbjct: 336 DALRAVAEEAHRRRS-----GARGLRAILEEIMLDVMYEIPSLTGVKECVVNRDVVENR 389


>gi|157273437|gb|ABV27336.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Chloracidobacterium thermophilum]
          Length = 415

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 155/419 (36%), Gaps = 84/419 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65
           P E+ + LD Y+IGQ++ K+ +A+A+   ++R ++         E+   NILL+GPTG G
Sbjct: 65  PIEVKAFLDDYVIGQEETKKKLAVAVYQHYKRVEMLRTRTAGDVEIAKSNILLIGPTGTG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A   +  +++  +   
Sbjct: 125 KTLLAQTLARILNVPFAIVDATTLTEAGYVGEDVENIILKLLQAANGEIERAQQGIIY-- 182

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  I              P   
Sbjct: 183 -----IDEIDKICRKDDNPSITRDVSGEGVQQALLKILEGTI---ANVPPQGGRKHPHQE 234

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +   + LF                   +  L R      I    + + S+       
Sbjct: 235 FYAVDTTNILF--------------ICGGAFCGLER------IIEKRIGKKSLG------ 268

Query: 246 IVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
             F  + D +   +D      V  E +               KYG I          G  
Sbjct: 269 --FNAKVDRRPAMKDGNIYSYVQPEDL--------------IKYGLIPEFVGRLPVIGTL 312

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H                    L          ILT  ++ +I QY+   + + + L FT+
Sbjct: 313 H-------------------ELDE---DALVDILTKPKNAIIKQYQRQFEWDNVRLRFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
           D++ A+A +A         +GAR L+ ++E ++ D  +     +  +   +  E V   
Sbjct: 351 DALRAIAHMAYQRK-----VGARGLRMILEELMLDAMYFLPSQKRIREFTVTREMVEDR 404


>gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim
           5]
          Length = 333

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 147/384 (38%), Gaps = 80/384 (20%)

Query: 39  RRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R    + +   EL   NI+LVGPTG GKT +++ LAR+   PF   + T  TE GYVG 
Sbjct: 7   KRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 66

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE II  L+  A   V  ++R  V                                   
Sbjct: 67  DVENIILKLLQAADYNVERAQRGIV----------------------------------- 91

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
                 E+D +++  S + S      G  V    L  +   V     +   +   Q+   
Sbjct: 92  ---YIDEVD-KISRKSDNPSITRDVSGEGVQQALLKVMEGTVASVPPQGGRKHPQQEFL- 146

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277
                          V   +I  +       LD+   I AR     IG            
Sbjct: 147 --------------QVDTTNILFICGGAFAGLDKI--ISARGEKTSIGF----------- 179

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
              G++V  +    +      +            L+PE  GR PV   L+ L++     I
Sbjct: 180 ---GATVKAQD---DRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQI 233

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L++ ++ LI QY+ L + E + L F ED++  +A  A+   +     GAR L+++ME++L
Sbjct: 234 LSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKT-----GARGLRSIMEKIL 288

Query: 398 EDISFSASDLQE-KTVVIDAEYVR 420
            D  F    L+  + VVI  E VR
Sbjct: 289 LDTMFELPTLEGVREVVISEEVVR 312


>gi|254582589|ref|XP_002499026.1| ZYRO0E01826p [Zygosaccharomyces rouxii]
 gi|238942600|emb|CAR30771.1| ZYRO0E01826p [Zygosaccharomyces rouxii]
          Length = 504

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 192/487 (39%), Gaps = 115/487 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49
           +PR I + LD YI+GQ  +K+ +++A+ N + R    +   +                  
Sbjct: 35  TPRNIKAHLDDYIVGQDKSKKVLSVAVYNHYLRNHDKSRKSELQKARTLIWEETQRREKE 94

Query: 50  -------------------------------ELMPKNILLVGPTGVGKTAISRRLARLAG 78
                                           L   N++++GP+G GKT ++  LA++  
Sbjct: 95  RQDKLGYESSESKAGLKNLQQQLLAHPDDDLVLSKSNLMMIGPSGSGKTLMATTLAKMLD 154

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEER 133
            P    + T+ T+ GY+G +VE  I  L+  A   V ++ R     DEV + A   A   
Sbjct: 155 VPIAITDCTQLTQAGYIGDSVEVCIERLLVNADFDVSKAERGIIVLDEVDKLAKPAAN-- 212

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE--VADTSSDISNFDIPGGASVGILN 191
                   T   +   V +  L+  E  + E+ ++  V   + + +N          +++
Sbjct: 213 ------IGTKDVSGEGVQQALLKIIEGHNVEVTVKRPVKQGTDNKNNQTAAKKDETFVID 266

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
            S +   +MG+      R+  +         + DR +D     +DS + +E   + F + 
Sbjct: 267 TSNILFMIMGAFVGLDKRIVKR--------VKGDRGLDESKEEKDSKEEIEK--LRFSNT 316

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
            ++I   D GNG    +E     + P               TD I F             
Sbjct: 317 IEQI---DLGNGK---KETALNLVTP---------------TDLISF------------G 343

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  TE ++  +A
Sbjct: 344 LIPELIGRVPIITALQPLERDDLYHILKEPKNALLEQYRYIFKQFGVQLCITEKALQRVA 403

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV---RLHIGDFPS 428
             A+         GAR L+ +MER+L ++++   D      ++  E V   +       +
Sbjct: 404 QFALR-----EGTGARGLRGIMERLLLNVNYECPDSGISYALVTEETVNSLQEKDYSLST 458

Query: 429 ETDMYHF 435
             D+ ++
Sbjct: 459 NVDVKYY 465


>gi|320581114|gb|EFW95336.1| ATP-binding protein [Pichia angusta DL-1]
          Length = 432

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/429 (23%), Positives = 165/429 (38%), Gaps = 106/429 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----------------DLRDE 50
           +PR++ + LD+YIIGQ   K+ +++A+ N + R Q  +                 D   E
Sbjct: 44  TPRQMKAHLDKYIIGQDHCKKVLSVAVFNHYIRVQDASNETSSTLLGAPVLHKKSDTGVE 103

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL GPTG GKT  +  +AR+   P +  + T  T+ GYVG +VE  I  L+  A
Sbjct: 104 LEKSNILLFGPTGSGKTLAATTMARVLQVPIVIQDCTSLTQAGYVGEDVESCILKLLAKA 163

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID-IEV 169
              V   +R  V         +  LD L      + T+++  + ++   +   E   + V
Sbjct: 164 DYDVNLCQRGIV-------VLDE-LDKLAKPQVYAGTKDIGGEGVQQALLKLVEGTSVSV 215

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               S+       GG +                                           
Sbjct: 216 QGKKSNHMENTGLGGGTA------------------------------------------ 233

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
             TV   +I  +       L   DKI+ +  G          Q D+L   + S +  +YG
Sbjct: 234 EYTVDTSTILFIGMGAFTGL---DKIIKKRLGRK-------KQSDVLSKAQPSDLE-QYG 282

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                 L+PE+ GR PV   LK L   D   IL + +++++ QY
Sbjct: 283 ----------------------LIPELVGRMPVFSSLKQLEVDDLERILVEPQNSIVRQY 320

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           +      G+ L FT+ ++  +A+ A+   +     GAR L+ V+E+VL   ++       
Sbjct: 321 EYSFAKSGVRLAFTKSAVRKIAETALKNGT-----GARGLRGVLEKVLLAANYECPGSGI 375

Query: 410 KTVVIDAEY 418
             V++D E 
Sbjct: 376 SFVLVDEEV 384


>gi|242088601|ref|XP_002440133.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
 gi|241945418|gb|EES18563.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
          Length = 546

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 161/420 (38%), Gaps = 97/420 (23%)

Query: 24  QDAKRAVAIALRNRWRRQQLPA------------------DLRDELMPKNILLVGPTGVG 65
             A + +++A+ N ++R    +                  D   EL   NILL+GPTG G
Sbjct: 115 DLAVQVLSVAVHNHYKRIYNESSNKCSVKSLARGGVTASCDDDIELEKSNILLIGPTGTG 174

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LAR    PF+  + T  T+ GY G +VE +I  L+  A   ++ +    V   
Sbjct: 175 KTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVAADFNIKAAEHGIVY-- 232

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                    +D +   T  ++ RE  R                                 
Sbjct: 233 ---------IDEVDKLTKKADCREDRR--------------------------------- 250

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            V    + +   K+         R   Q   P+   + + R I            +   G
Sbjct: 251 DVSGEGVQQALLKIFEGTVISVPRKRSQDNMPQGYVEVNTRNI------------LFICG 298

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT-DHILFIASGAF 304
             F    +KIVA    + +G          L     ++   +  SI+T ++   IA G  
Sbjct: 299 GAFFG-LEKIVAERHQHPVGFGIPICH--ELRNCSWTTALQESCSIDTVENDDLIAYG-- 353

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+ V L +L++     +L + ++ +  QYK+L K   + L FT+
Sbjct: 354 -------LIPEFIGRLPITVGLNNLSEEQLVQVLREPKNAIGKQYKKLFKMNDVKLYFTD 406

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVIDAEYV 419
           +++  +A  A    +     GAR L+++ME +L +  F   D +E       V++D E V
Sbjct: 407 NALRMIAKKAAAKET-----GARGLRSIMEDILTEAMFEIPDAREGKEKVIAVLVDEESV 461


>gi|311245295|ref|XP_003121766.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Sus scrofa]
          Length = 633

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|195590182|ref|XP_002084825.1| GD12633 [Drosophila simulans]
 gi|194196834|gb|EDX10410.1| GD12633 [Drosophila simulans]
          Length = 694

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 169/471 (35%), Gaps = 143/471 (30%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIAL--------RNRWRRQQLPADLRD----------- 49
           P++I+  LD++++GQ+ AK+ +++A+         N  +R+Q   +  +           
Sbjct: 276 PQKIMEYLDKHVVGQEYAKKVLSVAVYNHYKRIHHNLSQREQTADNAAETLSLCQLNISG 335

Query: 50  --------------------------------------ELMPKNILLVGPTGVGKTAISR 71
                                                 EL   NI+++GPTG GKT +++
Sbjct: 336 DISTLNSASQKKDLFVFGSEHESSTFNWKFPGIQSNDVELEKSNIMMLGPTGSGKTLVAK 395

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            +A+    PF   + T   + GYVG ++E ++  L+  A N V  ++   V         
Sbjct: 396 SIAKCLDVPFALCDCTTLMQAGYVGGDIESVLVKLLKDANNDVERAQTGIVYL------- 448

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
              +D +   + +   ++   K L                            G+ V + N
Sbjct: 449 -DEVDQICALSGSKGIQQGMLKMLE---------------------------GSVVSLTN 480

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             +LF K                             + MDT    +I  V +     LD+
Sbjct: 481 RGQLFGKA----------------------------VQMDT---TNILFVASGAFTGLDK 509

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
              I  R +     V+  G                            I   A  ++    
Sbjct: 510 I--IERRINEKNSDVTSTG------------EAGPPNAHQQERDKCLIKVQACDLAE-FG 554

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  G FP+ V   SL+      ILT+  + L+ QYK +   +G+ L F+ D++ + A
Sbjct: 555 MIPEFVGHFPIIVPFHSLDAYMLVRILTEPPNALVSQYKAMFHLDGVELTFSHDALISAA 614

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +A+      G++GAR L+ +ME++L D  F       + V I A+ V   
Sbjct: 615 QLAMK-----GNMGARGLRPIMEQLLLDPMFLVPGSDIRGVHITADNVMGK 660


>gi|296213478|ref|XP_002753288.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Callithrix jacchus]
          Length = 633

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ +++     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQERRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|158258064|dbj|BAF85005.1| unnamed protein product [Homo sapiens]
          Length = 633

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|153824210|ref|ZP_01976877.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33]
 gi|126518268|gb|EAZ75493.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33]
          Length = 228

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 116/228 (50%), Positives = 150/228 (65%), Gaps = 13/228 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA  PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ +  +   ++V+ +
Sbjct: 63  KTEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFR 122

Query: 126 ASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEER+LDAL+                S+TR+VFRKKLR+G+++DKEI+I VA    
Sbjct: 123 AEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQM 182

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +     PG   +    L  LF   +    KKK +M ++     L+ +
Sbjct: 183 GVEIMAPPGMEEM-TNQLQGLFQN-LAGDTKKKRKMKIKDALKALVEE 228


>gi|7242140|ref|NP_006651.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Homo sapiens]
 gi|14916956|sp|O76031|CLPX_HUMAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|7161189|emb|CAA06933.2| ClpX-like protein [Homo sapiens]
 gi|9665218|emb|CAC01291.1| ClpX protein [Homo sapiens]
 gi|119598121|gb|EAW77715.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
           [Homo sapiens]
 gi|119598122|gb|EAW77716.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a
           [Homo sapiens]
 gi|120660350|gb|AAI30374.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
 gi|223460850|gb|AAI36488.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens]
          Length = 633

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|157138274|ref|XP_001664208.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti]
 gi|108869543|gb|EAT33768.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti]
          Length = 633

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 138/376 (36%), Gaps = 64/376 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 344 NYSVERAQTGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 364 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTIVNVPERNSPRKLRGETVQ--------- 410

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G        +     + S+       
Sbjct: 411 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPASSSEGRRAAQASAAPMDNDQ 466

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           +  D  L        V     ++PE  GRFPV V   SL+      ILT+  + L+ QYK
Sbjct: 467 VERDANLRKVQAKDLV--EFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYK 524

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F E ++  +A +A+   +     GAR L+ +ME +L +  F       +
Sbjct: 525 ALLGMDQVELTFAEGALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVQ 579

Query: 411 TVVIDAEYVRLHIGDF 426
           TV I  + VR      
Sbjct: 580 TVHITEDCVRNQTEPV 595


>gi|114657641|ref|XP_001174382.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial isoform 4 [Pan troglodytes]
          Length = 633

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGINPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|308799613|ref|XP_003074587.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri]
 gi|116000758|emb|CAL50438.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri]
          Length = 506

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/445 (22%), Positives = 163/445 (36%), Gaps = 99/445 (22%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50
           +PR++V  LD YI+GQ  AK+ +++A+ N ++R    ++ R                   
Sbjct: 101 TPRQMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAESEQRAREAADLSAVERELENDRT 160

Query: 51  ----------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                     L   NI+L GPTG GKT +++ LA+ A  PF   + T  T+ GYVG +VE
Sbjct: 161 ESANSFDDVTLEKSNIILCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYVGEDVE 220

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            I+  L+  A   V  ++R  V            +D +      S+T  V R        
Sbjct: 221 SILHKLLQNANFDVNAAQRGIVY-----------IDEIDKLARKSDTVSVTR-------- 261

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                D+        +         +V      +  +          I       +  L 
Sbjct: 262 -----DVSGEGVQQALLKMVEGTVVNVPEKGGRKNPNSQFVPLDTANILFICGGAFTGLE 316

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
                  +      + SI               K V+         + E   + +  +  
Sbjct: 317 N------VIQQRQSKSSIGFG------------KPVSARDEPNSKEAIEAAAKAMQEVET 358

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
           G  VS                          L+PE  GRFPV V L++L + +   ILT 
Sbjct: 359 GDIVS------------------------YGLIPEFVGRFPVCVPLQALGEKELVDILTK 394

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               +  Q++ LM   G+ L +T+D++  +A  AV   +     GAR L+T++ER+L D 
Sbjct: 395 PRDAIGKQFQRLMDMHGVELQYTDDALAHIASAAVKRGT-----GARGLRTLLERLLTDA 449

Query: 401 SFSASDLQ-EKTVVIDAEYVRLHIG 424
            F   D      V+ID E     + 
Sbjct: 450 MFEVPDDPMISEVIIDGESAEAGLA 474


>gi|126277064|ref|XP_001367093.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 2
           [Monodelphis domestica]
          Length = 617

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 142/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 268 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 327

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 328 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 347

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 348 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 393

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 394 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 446

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 447 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 506

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A++  +     GAR L+++ME++L +  F
Sbjct: 507 NAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKT-----GARGLRSIMEKLLLEPMF 561

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 562 EVPNSDIVCVEVDKEVVEGK 581



 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGP 61
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P
Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP 221


>gi|160357931|emb|CAP19066.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas
           avellanae]
          Length = 277

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
           G       L  LF+  MG G+ K  ++ V++    +  +E+ RL++ + +   +++ VE 
Sbjct: 2   GMQEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELKVKALEAVEQ 60

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           +GIVF+DE DK+  R +  G+ VSREGVQRDLLPL+EG +V+TK G + TDHILFIASGA
Sbjct: 61  HGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTDHILFIASGA 120

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           FH+S+P+DL+PE+QGR P+RV LK+L+  DF  ILT+  ++L  QY+EL+KTEG+ ++F 
Sbjct: 121 FHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLKTEGLKIEFK 180

Query: 364 EDSIDALADVAVN 376
            D I  LA++A  
Sbjct: 181 PDGIKRLAEIAWQ 193


>gi|56119122|ref|NP_001007804.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Rattus norvegicus]
 gi|81910247|sp|Q5U2U0|CLPX_RAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|55250758|gb|AAH85867.1| ClpX caseinolytic peptidase X homolog (E. coli) [Rattus norvegicus]
 gi|149041979|gb|EDL95820.1| caseinolytic peptidase X (E.coli) [Rattus norvegicus]
          Length = 633

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL        ++++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQGSQQMPQEKRGGEVLDSPHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|297478977|ref|XP_002690567.1| PREDICTED: ClpX caseinolytic protease X homolog [Bos taurus]
 gi|296483742|gb|DAA25857.1| ClpX caseinolytic protease X homolog [Bos taurus]
          Length = 613

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 264 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 323

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 324 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 343

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 344 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 389

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 390 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 442

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 443 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 502

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 503 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 557

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 558 EVPNSDIVCVEVDKEVVEGK 577



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 152 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 207

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 208 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 230

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 231 ------NALGASVQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 279

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 280 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 331

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 332 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 391

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 392 TTNILFVASGAFN 404


>gi|88809299|ref|ZP_01124807.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7805]
 gi|88786518|gb|EAR17677.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           7805]
          Length = 344

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 92/409 (22%), Positives = 143/409 (34%), Gaps = 91/409 (22%)

Query: 32  IALRNRWRRQQLPADLRDE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
           +A+ N ++R     D + E       L   NILL+GPTG GKT +++ LA +   PF   
Sbjct: 1   VAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGPTGCGKTLLAQTLAEMLDVPFAVA 60

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT 144
           + T  TE GYVG +VE I+  L+  A   V  ++R  +                      
Sbjct: 61  DATTLTEAGYVGEDVENILLRLLQKADMDVELAQRGII---------------------- 98

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
                              EID ++A  S + S      G  V    L  L   V     
Sbjct: 99  ----------------YIDEID-KIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPP 141

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
           +   +   Q C                 +    I  +     V LD  D +  R   N I
Sbjct: 142 QGGRKHPYQDCI---------------QIDTSQILFICGGAFVGLD--DVVQKRMGRNAI 184

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD-----LLPEIQGR 319
           G                  V               A+       P D     L+PE  GR
Sbjct: 185 GF-----------------VPADGRGRGKATRDLQAAQVLRHLEPDDLVRYGLIPEFIGR 227

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L++     ILT+    L+ Q++ L+  + + L+F   +I+A+A  A    +
Sbjct: 228 MPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLEFEPRAIEAIAQEAHRRKT 287

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
                GAR L+ ++E ++ D+ +     +   +  I    V  H G   
Sbjct: 288 -----GARALRGIVEELMLDLMYELPSSKNVSSFTITRAMVEEHTGGKV 331


>gi|145341067|ref|XP_001415637.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901]
 gi|144575860|gb|ABO93929.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901]
          Length = 524

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 170/450 (37%), Gaps = 104/450 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------------------- 48
           +P+E+V  LD YI+GQ  AK+ +++A+ N ++R     + R                   
Sbjct: 112 TPKEMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAEGERRAREASAAFAQRLDEEDGAF 171

Query: 49  ------DE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
                 DE       L   NILL GPTG GKT +++ LA+ A  PF   + T  T+ GYV
Sbjct: 172 EDENVVDENSLDDVTLEKSNILLCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYV 231

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE I+  L+  A   V+ ++R  V         + I          S TR+V  + +
Sbjct: 232 GEDVESILHKLLQNANYDVQAAQRGIVY-------IDEIDKLSRKSDNVSITRDVSGEGV 284

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           +   +              + +  ++P        N                I       
Sbjct: 285 QQALL-----------KMVEGTTVNVPEKGGRKNPNSQ------FVQLDTTNILFICGGA 327

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275
           +  L        +    + + SI   +            ++ARD  N      E   + L
Sbjct: 328 FTGLES------VIQQRLSKSSIGFGKP-----------VIARDEPNSKQA-VEAAAKAL 369

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
             +  G  VS                          L+PE  GRFPV V L +L + +  
Sbjct: 370 QEVETGDIVS------------------------YGLIPEFVGRFPVCVPLSALGEKELV 405

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT     +  QY+ L++  G  L +T++++  +A  AV   +     GAR L+T++ER
Sbjct: 406 DILTKPRDAVGKQYQRLLEMHGADLTYTDEALSLIARAAVKRGT-----GARGLRTLLER 460

Query: 396 VLEDISFSASDLQ-EKTVVIDAEYVRLHIG 424
           +L D  F   D      V+ID E     + 
Sbjct: 461 LLTDAMFEVPDDPTVSEVLIDGESAEAGLA 490


>gi|313228012|emb|CBY23161.1| unnamed protein product [Oikopleura dioica]
          Length = 493

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 170/441 (38%), Gaps = 85/441 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51
           +P+E  + LDR++IGQ+ AK  ++ A+   ++R Q     +                  +
Sbjct: 112 TPKEFHAYLDRFVIGQEPAKMELSTAVHYHYKRIQNNLQYKANQEEKKQAAEGEMASVLI 171

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NIL++GPTG GKT + + LA+    P+   + T  T+ GYVG ++E +I+ L+  + 
Sbjct: 172 DKSNILIMGPTGSGKTHLVQTLAKYLDVPYAVADCTALTQAGYVGEDIESVIQKLLQNSG 231

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
             V +++R  V        ++     L G      + E  ++ L             +  
Sbjct: 232 GNVEKAQRGIVY---LDEIDKIAARKLSGGNFRDVSGEGVQQGLLKL----------LEG 278

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +   + +      A    ++ S++                    +  L +      +   
Sbjct: 279 SVVSVKDPFKKPAAGNIQVDTSDIL-------------FICSGAFTGLPK------LIQS 319

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            + + S+        V L +  KI A +  +                             
Sbjct: 320 RMQKKSLGFTAKPQTVSLTKKSKIAAMEERHKEED------------------------- 354

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
             + +L I     H      L+PE  GR  V V + +L ++DF  IL + ++ ++ QY+ 
Sbjct: 355 --ECMLRIEPEDLH---KFGLIPEFVGRLQVLVPIMNLTQNDFVRILNEPDNAIVKQYRS 409

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L+    + L+ T+++ + +A +A+   +     GAR L + M  +L+ + +        +
Sbjct: 410 LLA--PVELEMTDEAFERIAQIAIERGT-----GARGLNSSMHNLLKSVKYEIPGSDITS 462

Query: 412 VVIDAEYVRLHIGDFPSETDM 432
           V IDA+ V        +  ++
Sbjct: 463 VYIDADVVDKKKEPVLTRGEL 483


>gi|51246389|ref|YP_066273.1| ATP-dependent protease ATP-binding subunit [Desulfotalea
           psychrophila LSv54]
 gi|61211470|sp|Q6AK60|CLPX_DESPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50877426|emb|CAG37266.1| probable ATP-dependent Clp protease, ATPase subunit (ClpX)
           [Desulfotalea psychrophila LSv54]
          Length = 419

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 159/421 (37%), Gaps = 87/421 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
             P+++ + LD Y+IGQ  AK+ +A+A+ N ++R   P +L D   EL   NI+L+GPTG
Sbjct: 64  LVPKDVKAHLDDYVIGQAYAKKVLAVAVHNHYKRIDAPVELLDDSVELQKSNIILLGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V +++R  + 
Sbjct: 124 SGKTLVAQTLAKILNVPFSVADATTLTEAGYVGDDVENILVSLLQAADYDVEKAQRGIIY 183

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
                   + I        + S TR+V  + ++   +    I+  VA             
Sbjct: 184 -------IDEIDKIARKSDSASLTRDVSGEGVQQALLKI--IEGTVASVPPKGG------ 228

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
                                    +   Q+                  +   +I  +  
Sbjct: 229 ------------------------RKHPQQELVK---------------IDTTNILFICG 249

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS--TKYGSINTDHILFIAS 301
              V L    K  A     G        +R    L+E        K+G I          
Sbjct: 250 GAFVGLGRVVKRRAGKKSIGFSADLSADKRSESELLEAVRPEDLLKFGLIPELVGRLPVI 309

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            +       D                         IL + ++ L  Q+++L + EG+ L 
Sbjct: 310 ASLRELSEDD----------------------LVRILREPKNALTRQFEKLFQFEGVKLT 347

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           FTE S+ A+A  A+   S     GAR L++V+E  + DI +    L   +  +++ + + 
Sbjct: 348 FTEGSLAAVAKKAIARKS-----GARGLRSVLEEAMLDIMYDIPSLSNVQECIVNEQVIT 402

Query: 421 L 421
            
Sbjct: 403 D 403


>gi|67516135|ref|XP_657953.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4]
 gi|40746599|gb|EAA65755.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4]
 gi|259489415|tpe|CBF89668.1| TPA: ATP-dependent Clp protease, putative (AFU_orthologue;
           AFUA_1G02170) [Aspergillus nidulans FGSC A4]
          Length = 630

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 111/514 (21%), Positives = 188/514 (36%), Gaps = 125/514 (24%)

Query: 8   SPREIVSELDRYIIG-------------------------QQDAKRAVAIALR--NRWRR 40
           +P+ +   LD++++G                         Q++A++ +A  LR  +  RR
Sbjct: 80  TPKSLKQYLDQFVVGQERAKKILSVAVYNHYQRVQELQRRQEEAEQLLAKRLRREDIQRR 139

Query: 41  QQLPADL---------------RDE---------------------------------LM 52
           Q+   +L                DE                                 + 
Sbjct: 140 QEEREELLGKHASTDSVEHHPVEDEYPGQQRTIYPNNPPTQPSYATDNAEIDESSQLQIE 199

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             N+LL+GP+GVGKT + R LAR+   PF   + T FT+ GY+G + E  +  L+  A  
Sbjct: 200 KSNVLLLGPSGVGKTLMCRSLARVLSVPFSISDCTPFTQAGYIGDDAEVCVHRLLAAANY 259

Query: 113 IVRESRR-----DEVREQASINA-----------EERILDALVGKTATSNTREVFRKKLR 156
            V ++ R     DE+ + A+              +E +L  L G T     ++       
Sbjct: 260 DVEQAERGIIVLDEIDKIAAAKVSHGRDVGGSGVQESLLKLLEGTTVQVQAKQERSAPRL 319

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G  S         +     + F  PGG +  + +  E+++      R   I       +
Sbjct: 320 SGTTSSSYP----PNGPLGNTPFTPPGGGN--VPHKGEVYN-----VRTDNILFICSGAF 368

Query: 217 PELMRDESDRLIDMDTVHRDSI---QMVENYGIVFLD---EFDKIVARDSGNGIGVSREG 270
             L +      + MD + R S+   Q V N      D    +D    +      G   E 
Sbjct: 369 AGLHK------VVMDRISRGSMGFGQPVRNPPQTSTDRPHSYDSTANQPVPILPGSEEEA 422

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS--RPADLLPEIQGRFPVRVHLKS 328
           + +  LP     S+S+       +   F A    + +  +    +PE+ GR PV   L +
Sbjct: 423 LYKKHLPFFTPPSLSSP----EAEPTYFNALDLINQTDLQNYGFIPELVGRIPVNAALSA 478

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L++     ILT+  ++L+ QY  L    GI L FT  ++  +A  A  + +     GAR 
Sbjct: 479 LSQPLLVRILTEPRNSLVAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARA 533

Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           L+T ME +L D  F       K V++        
Sbjct: 534 LRTEMETILSDAMFETPGSSVKFVLVTENVAERK 567


>gi|307180270|gb|EFN68303.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Camponotus floridanus]
          Length = 593

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 143/374 (38%), Gaps = 66/374 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 256 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 315

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 316 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 335

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    L  L   ++    +   R    +               M
Sbjct: 336 GAIPGIHQLRDVGGEGVQQGMLKMLEGTIVNVPERNSSRKLRGE---------------M 380

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    I  R S    G G   + E   R    L + +++S 
Sbjct: 381 LQVDTTNILFVASGAYSGLDRL--IARRKSEKYLGFGATPAAESPGRRAATLADVANMSP 438

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +L++     ILT+ ++ ++
Sbjct: 439 STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIV 498

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L   + + L F  D+++A+A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 499 PQYQMLFSMDKVELTFDVDALNAIASLAMERKT-----GARGLRAIMESLLLEPMFEVPG 553

Query: 407 LQEKTVVIDAEYVR 420
               +V I  + V+
Sbjct: 554 SGIVSVHITEQCVK 567



 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI 56
           I   L+R+++GQ+ AK+ +++A+ N ++R      ++      NI
Sbjct: 144 IFEYLNRHVVGQEYAKKVLSVAVYNHYKRIYNNLPVQTSQTQANI 188


>gi|328771874|gb|EGF81913.1| hypothetical protein BATDEDRAFT_34654 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 746

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 175/480 (36%), Gaps = 132/480 (27%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRW---------------------------------- 38
            + LD++++GQ+  K+A+++A+ N +                                  
Sbjct: 284 RALLDQHVVGQERLKKALSVAIYNHYKRVDHNCGTSATEIDPREGMTEYLFDFAKLSQWV 343

Query: 39  ------------------RRQQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAG 78
                             +R +  A   + L     NILL+GPTG GKT I++ +A++  
Sbjct: 344 YPNYCFELMSRFTGDTVKKRGRPSAVDVEPLTIDKSNILLLGPTGSGKTLIAKTVAKILN 403

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF   + T FT+ GYVG +VE  I  L+  +   + +++R  V     I+   R  DA 
Sbjct: 404 VPFSMNDATPFTQAGYVGDDVEVCIHRLLQNSGFDIAKAQRGIV-FIDEIDKISRRSDAS 462

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
                  +   V +  LR  E +   I ++               GA       SE+FS 
Sbjct: 463 NPNQRDVSGEGVQQGLLRMLEGTVVNITVK-----------AGATGAKRSATQGSEVFS- 510

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258
                                             V   +I  + +   V L   DKIV  
Sbjct: 511 ----------------------------------VDTSNILFICSGAFVGL---DKIVQS 533

Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----L 313
            +G    +  +         +  +  S       T + L      FH   P DL     +
Sbjct: 534 RTGVKGSIGFDA-------PLTQTHCS------ETTNKL----NPFHSVEPDDLIKFGFI 576

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+      L+  +   IL + ++ ++ QY+E+ +   + L     ++  +A +
Sbjct: 577 PEFIGRLPIIASSDPLSVEELERILVEPKNAIVKQYQEIFRRSNLELLVHPLALRKIATL 636

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE-YVRLHIGDFPSETDM 432
           A   NS     GAR L+ ++E  L+D  +     + K +V+D +  V   +G F  E  M
Sbjct: 637 ATAKNS-----GARGLRRIIESALQDALYEYPGSEYKYIVLDEDAVVTGKVGHFKQEKYM 691


>gi|149691862|ref|XP_001498252.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX-like, mitochondrial isoform 1 [Equus
           caballus]
          Length = 633

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|151946612|gb|EDN64834.1| ATP-binding protein [Saccharomyces cerevisiae YJM789]
          Length = 520

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 186/479 (38%), Gaps = 110/479 (22%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----------------- 44
           +L+   +P+ +   LD YI+GQ+  K+ +++A+ N + R                     
Sbjct: 32  RLSNIPTPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREK 91

Query: 45  -ADLRDE--------------------------------LMPKNILLVGPTGVGKTAISR 71
            AD RDE                                L   N+L+VGP+G GKT ++ 
Sbjct: 92  IADDRDEPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLAT 151

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            LA++   P    + T+ T+ GY+G +VE  I  L+  A         D  R +  I   
Sbjct: 152 TLAKILNVPIAITDCTQLTQAGYIGEDVEVCIERLLVNA-------EFDVARAEKGIIVL 204

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           + I D L    A+  T++V  + ++   +   E   +V  T       DI G  +     
Sbjct: 205 DEI-DKLAKPAASIGTKDVSGEGVQQSLLKIIEGH-KVEITVKRPVKHDIDGQKNQTTTK 262

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             E+F           I   +   +  L +    R+ DM  + + + + VE         
Sbjct: 263 KDEVF-----VVDTSNILFMIMGAFVGLDKHIVKRIEDMKKI-QKAGESVE--------- 307

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG----AFHVS 307
                   S N   V +E  +              K+   NT   + + +G    A  ++
Sbjct: 308 --------SSNSKEVEKERAK--------------KFRFSNTLEQVELDNGKKVCALDLT 345

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  
Sbjct: 346 TPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCV 405

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           T+ ++  +A  A+         GAR L+ +MER+L ++++         V+ID   V  
Sbjct: 406 TQKALKKVAQFALK-----EGTGARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATVDS 459


>gi|6319704|ref|NP_009786.1| Mcx1p [Saccharomyces cerevisiae S288c]
 gi|586344|sp|P38323|MCX1_YEAST RecName: Full=Mitochondrial clpX-like chaperone MCX1
 gi|536622|emb|CAA85190.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810557|tpg|DAA07342.1| TPA: Mcx1p [Saccharomyces cerevisiae S288c]
          Length = 520

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 186/479 (38%), Gaps = 110/479 (22%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----------------- 44
           +L+   +P+ +   LD YI+GQ+  K+ +++A+ N + R                     
Sbjct: 32  RLSNIPTPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREK 91

Query: 45  -ADLRDE--------------------------------LMPKNILLVGPTGVGKTAISR 71
            AD RDE                                L   N+L+VGP+G GKT ++ 
Sbjct: 92  IADDRDEPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLAT 151

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            LA++   P    + T+ T+ GY+G +VE  I  L+  A         D  R +  I   
Sbjct: 152 TLAKILNVPIAITDCTQLTQAGYIGEDVEVCIERLLVNA-------EFDVARAEKGIIVL 204

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           + I D L    A+  T++V  + ++   +   E   +V  T       DI G  +     
Sbjct: 205 DEI-DKLAKPAASIGTKDVSGEGVQQSLLKIIEGH-KVEITVKRPVKHDIDGQKNQTTTK 262

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             E+F           I   +   +  L +    R+ DM  + + + + VE         
Sbjct: 263 KDEVF-----VVDTSNILFMIMGAFVGLDKHIVKRIEDMKKI-QKAGESVE--------- 307

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG----AFHVS 307
                   S N   V +E  +              K+   NT   + + +G    A  ++
Sbjct: 308 --------SSNSKEVEKERAK--------------KFRFSNTLEQVELDNGKKVCALDLT 345

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  
Sbjct: 346 TPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCV 405

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           T+ ++  +A  A+         GAR L+ +MER+L ++++         V+ID   V  
Sbjct: 406 TQKALKKVAQFALK-----EGTGARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATVDS 459


>gi|74000522|ref|XP_852508.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted)
           isoform 1 [Canis familiaris]
          Length = 633

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQMPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|74000526|ref|XP_865874.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted)
           isoform 3 [Canis familiaris]
          Length = 616

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 267 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 326

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 327 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 346

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 347 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 392

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 393 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 445

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 446 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 505

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 506 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 560

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 561 EVPNSDIVCVEVDKEVVEGK 580



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 155 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 210

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 211 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 233

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 234 ------NALGASMQQQVNQQMPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 282

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 283 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 334

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 335 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 394

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 395 TTNILFVASGAFN 407


>gi|291402838|ref|XP_002718046.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 2
           [Oryctolagus cuniculus]
          Length = 633

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVVPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|126277060|ref|XP_001367043.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 1
           [Monodelphis domestica]
          Length = 631

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 142/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 282 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 341

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 342 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 361

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 362 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 407

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 408 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 460

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 461 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 520

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A++  +     GAR L+++ME++L +  F
Sbjct: 521 NAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKT-----GARGLRSIMEKLLLEPMF 575

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 576 EVPNSDIVCVEVDKEVVEGK 595



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 225

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 226 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 248

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 249 ------NALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKS-----NILLLGPTGSGK 297

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 298 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 349

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 350 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 409

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 410 TTNILFVASGAFN 422


>gi|109081526|ref|XP_001108768.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial isoform 2 [Macaca mulatta]
          Length = 633

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|332235701|ref|XP_003267043.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Nomascus leucogenys]
          Length = 580

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 231 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 290

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 291 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 310

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 311 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 356

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 357 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 409

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 410 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 469

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 470 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 524

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 525 EVPNSDIVCVEVDKEVVEGK 544



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 119 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 174

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 175 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 197

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 198 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 246

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 247 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 298

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 299 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 358

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 359 TTNILFVASGAFN 371


>gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Acromyrmex echinatior]
          Length = 592

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 142/374 (37%), Gaps = 66/374 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 255 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 314

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 315 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 334

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    L  L   ++    +   R    +               M
Sbjct: 335 GAIPGIHQLRDVGGEGVQQGMLKMLEGTIVNVPERNSSRKLRGE---------------M 379

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    I  R S    G G   + E   R    L + +++S 
Sbjct: 380 LQVDTTNILFVASGAYSGLDRL--IARRKSEKYLGFGATPAVESPGRRAATLADVANMSP 437

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +L++     ILT+ ++ +I
Sbjct: 438 STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAII 497

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L   + + L F   +++A+A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 498 PQYQMLFSMDKVELTFDTHALNAIASLAMERKT-----GARGLRAIMESLLLEPMFEVPG 552

Query: 407 LQEKTVVIDAEYVR 420
               +V I  + V+
Sbjct: 553 SDIVSVHITEQCVK 566



 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   L+R+++GQ+ AK+ +++A+ N ++R       ++     N+    P    +T    
Sbjct: 143 IFEYLNRHVVGQEYAKKVLSVAVYNHYKRIYNNLPTQNSQAQTNV---NPVNTQET---- 195

Query: 72  RLARLAGAPFI 82
                   PF 
Sbjct: 196 ------NHPFT 200


>gi|301756913|ref|XP_002914296.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Ailuropoda melanoleuca]
          Length = 633

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVVPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASVQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|297696878|ref|XP_002825604.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Pongo abelii]
          Length = 633

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|75070594|sp|Q5R7N3|CLPX_PONAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|55731022|emb|CAH92227.1| hypothetical protein [Pongo abelii]
          Length = 633

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 409

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 410 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 523 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 577

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 578 EVPNSDIVCVEVDKEVVEGK 597



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|281347326|gb|EFB22910.1| hypothetical protein PANDA_002175 [Ailuropoda melanoleuca]
          Length = 607

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 258 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 317

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 318 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 337

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 338 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 383

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 384 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 436

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 437 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 496

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 497 NAVVPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 551

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 552 EVPNSDIVCVEVDKEVVEGK 571



 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 146 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 201

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 202 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 224

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 225 ------NALGASVQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 273

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 274 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 325

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 326 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 385

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 386 TTNILFVASGAFN 398


>gi|327283765|ref|XP_003226611.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Anolis carolinensis]
          Length = 630

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 140/380 (36%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 281 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 340

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 341 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 360

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 361 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 406

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++  
Sbjct: 407 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANL 459

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
               NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 460 GSETNTQQDMEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVRILTEPR 519

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A++  +     GAR L+++ME++L +  F
Sbjct: 520 NAVIPQYQALFSMDKCELNVTEDALKAIARLALDRKT-----GARGLRSIMEKLLLEPMF 574

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 575 EVPNSDIVCVEVDKEVVEGK 594



 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 116/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA LR +   +    + P    +   
Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPATLRQQAEVEKQTSITP----RDLE 224

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 225 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 247

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 248 ------NALGASVQQQVNQQMPQEKRGGEVLDSNHDDIKLEKS-----NILLLGPTGSGK 296

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 297 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 348

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 408

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 409 TTNILFVASGAFN 421


>gi|320170276|gb|EFW47175.1| heat shock protein HslVU [Capsaspora owczarzaki ATCC 30864]
          Length = 732

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/267 (40%), Positives = 155/267 (58%), Gaps = 32/267 (11%)

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            R   +RM  +     L   E+  L++   + R ++Q VE  GIVF+++ DKI      +
Sbjct: 466 HRPPVMRMRAKDALSLLAEMEASVLLNDTLIVRSAVQHVEQDGIVFIEDIDKICTPTPSS 525

Query: 263 GI-------GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
                      S E VQRDLLPL+EG+ VST +G + TDHILFIASG+F  S+P+DLLPE
Sbjct: 526 TSSSRRVVSEASYEPVQRDLLPLIEGTLVSTPFGPVRTDHILFIASGSFRSSQPSDLLPE 585

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGRFP+RV LK+L++SD   +LT  E+N+I Q  ELM+TEG+ L FT ++I  +A +A 
Sbjct: 586 LQGRFPIRVQLKALSESDLYQLLTWPEANVIAQQVELMRTEGVALSFTAEAIREIARIAY 645

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDL-------------------------QEK 410
            +N  V +IGARRL T++ERV+EDISFSA D                          +  
Sbjct: 646 EVNGAVENIGARRLNTILERVVEDISFSAPDRVAHHRSAAVQAGIEPTGHTSDSGTSELI 705

Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437
            VVI+   VR  + +   ++D+  F+L
Sbjct: 706 PVVINEHDVRRTVNESFLKSDLSRFVL 732



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 110/172 (63%), Gaps = 13/172 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +IV+ELD++++GQ DAKRAVA+ALRNRWRR QLP ++RD ++PKNI+++G TGVGKT
Sbjct: 160 TPAQIVAELDKHVVGQVDAKRAVALALRNRWRRHQLPPNMRDVVVPKNIIMIGSTGVGKT 219

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVG--RNVEQIIRDLVDVAINIVRESRRDEVREQ 125
            I+RR+A+L  APFIKVE T++         +++E  I DLV +++   R   R +VR++
Sbjct: 220 EIARRMAKLTDAPFIKVEATRYIRSAAANDRQDIEHAIHDLVRLSVQAARTRTRAQVRDK 279

Query: 126 ASINAEERIL-DALVGKTATS----------NTREVFRKKLRDGEISDKEID 166
                E+RI+ D +  + A S           T+E  R+ +      D+ I+
Sbjct: 280 IHRAVEDRIIGDIIARRNAESTEVLSPEHIEETKEALRRMIHFSRTDDRMIE 331


>gi|113205071|ref|NP_035932.2| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial isoform 1 [Mus musculus]
          Length = 634

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 285 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 344

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 345 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 364

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 365 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 410

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   ++  V +     LD    I  R +   +G                + ++ +
Sbjct: 411 -----VDTTNVLFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 463

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 464 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 523

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 524 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 578

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 579 EVPNSDIVCVEVDKEVVEGK 598



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTP----RELE 228

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 229 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 251

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +   + DI++  +     N  + G    G 
Sbjct: 252 ------NALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKS-----NILLLGPTGSGK 300

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 301 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 352

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 412

Query: 293 TDHILFIASGAFH 305
           T ++LF+ASGAF+
Sbjct: 413 TTNVLFVASGAFN 425


>gi|14916542|sp|Q9JHS4|CLPX_MOUSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial; Flags: Precursor
 gi|9663733|emb|CAC01232.1| ClpX protein [Mus musculus]
          Length = 634

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 140/380 (36%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 285 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 344

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 345 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 364

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 365 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 410

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   ++  V +     LD    I  R +   +G                  ++ +
Sbjct: 411 -----VDTTNVLFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAARDLANR 463

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 464 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 523

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 524 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 578

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 579 EVPNSDIVCVEVDKEVVEGK 598



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTP----RELE 228

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 229 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 251

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +   + DI++  +     N  + G    G 
Sbjct: 252 ------NALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKS-----NILLLGPTGSGK 300

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 301 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 352

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 412

Query: 293 TDHILFIASGAFH 305
           T ++LF+ASGAF+
Sbjct: 413 TTNVLFVASGAFN 425


>gi|190408624|gb|EDV11889.1| ATP-binding protein [Saccharomyces cerevisiae RM11-1a]
 gi|207347530|gb|EDZ73669.1| YBR227Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256272890|gb|EEU07858.1| Mcx1p [Saccharomyces cerevisiae JAY291]
 gi|290878244|emb|CBK39303.1| Mcx1p [Saccharomyces cerevisiae EC1118]
 gi|323305890|gb|EGA59626.1| Mcx1p [Saccharomyces cerevisiae FostersB]
          Length = 520

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 183/479 (38%), Gaps = 110/479 (22%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ 49
           +L+   +P+ +   LD YI+GQ+  K+ +++A+ N + R        +            
Sbjct: 32  RLSNIPTPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREK 91

Query: 50  --------------------------------------ELMPKNILLVGPTGVGKTAISR 71
                                                 EL   N+L+VGP+G GKT ++ 
Sbjct: 92  IADDKDEPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLAT 151

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            LA++   P    + T+ T+ GY+G +VE  I  L+  A         D  R +  I   
Sbjct: 152 TLAKILNVPIAITDCTQLTQAGYIGEDVEVCIERLLVNA-------EFDVARAEKGIIVL 204

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           + I D L    A+  T++V  + ++   +   E   +V  T       DI G  +     
Sbjct: 205 DEI-DKLAKPAASIGTKDVSGEGVQQSLLKIIEGH-KVEITVKRPVKHDIDGQKNQTTTK 262

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             E+F           I   +   +  L +    R+ DM  + + + + VE         
Sbjct: 263 KDEVF-----VVDTSNILFMIMGAFVGLDKHIVKRIEDMKKI-QKAGESVE--------- 307

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG----AFHVS 307
                   S N   V +E  +              K+   NT   + + +G    A  ++
Sbjct: 308 --------SSNSKEVEKERAK--------------KFRFSNTLEQVELDNGKKVCALDLT 345

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  
Sbjct: 346 TPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCV 405

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           T+ ++  +A  A+         GAR L+ +MER+L ++++         V+ID   V  
Sbjct: 406 TQKALKKVAQFALK-----EGTGARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATVDS 459


>gi|148694140|gb|EDL26087.1| caseinolytic peptidase X (E.coli) [Mus musculus]
          Length = 634

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 285 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 344

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 345 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 364

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 365 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 410

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   ++  V +     LD    I  R +   +G                + ++ +
Sbjct: 411 -----VDTTNVLFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 463

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 464 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 523

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 524 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 578

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 579 EVPNSDIVCVEVDKEVVEGK 598



 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTP----RELE 228

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 229 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 251

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +   + DI++  +     N  + G    G 
Sbjct: 252 ------NALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKS-----NILLLGPTGSGK 300

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 301 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 352

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 412

Query: 293 TDHILFIASGAFH 305
           T ++LF+ASGAF+
Sbjct: 413 TTNVLFVASGAFN 425


>gi|71895647|ref|NP_001025723.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Gallus gallus]
 gi|53128038|emb|CAG31266.1| hypothetical protein RCJMB04_4h24 [Gallus gallus]
          Length = 630

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 140/380 (36%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 281 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 340

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 341 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 360

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 361 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 406

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++  
Sbjct: 407 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNMGKGRRAAAAADLANI 459

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 460 SGEPNTHEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVRILTEPR 519

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 520 NAVVPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 574

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D + V   
Sbjct: 575 EVPNSDIVCVEVDKDVVEGK 594



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 224

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 225 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 247

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 248 ------NALGASMQQQMNQQIPQEKRGGEVLDSPNDDIKLEKS-----NILLLGPTGSGK 296

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 297 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 348

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 408

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 409 TTNILFVASGAFN 421


>gi|323334654|gb|EGA76028.1| Mcx1p [Saccharomyces cerevisiae AWRI796]
          Length = 519

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 183/479 (38%), Gaps = 110/479 (22%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ 49
           +L+   +P+ +   LD YI+GQ+  K+ +++A+ N + R        +            
Sbjct: 32  RLSNIPTPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREK 91

Query: 50  --------------------------------------ELMPKNILLVGPTGVGKTAISR 71
                                                 EL   N+L+VGP+G GKT ++ 
Sbjct: 92  IADDKDEPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLAT 151

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            LA++   P    + T+ T+ GY+G +VE  I  L+  A         D  R +  I   
Sbjct: 152 TLAKILNVPIAITDCTQLTQAGYIGEDVEVCIERLLVNA-------EFDVARAEKGIIVL 204

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           + I D L    A+  T++V  + ++   +   E   +V  T       DI G  +     
Sbjct: 205 DEI-DKLAKPAASIGTKDVSGEGVQQSLLKIIEGH-KVEITVKRPVKHDIDGQKNQTTTK 262

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             E+F           I   +   +  L +    R+ DM  + + + + VE         
Sbjct: 263 KDEVF-----VVDTSNILFMIMGAFVGLDKHIVKRIEDMKKI-QKAGESVE--------- 307

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG----AFHVS 307
                   S N   V +E  +              K+   NT   + + +G    A  ++
Sbjct: 308 --------SSNSKEVEKERAK--------------KFRFSNTLEQVELDNGKKVCALDLT 345

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D     L+PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L  
Sbjct: 346 TPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCV 405

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           T+ ++  +A  A+         GAR L+ +MER+L ++++         V+ID   V  
Sbjct: 406 TQKALKKVAQFALK-----EGTGARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATVDS 459


>gi|114657643|ref|XP_001174375.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 599

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 250 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 309

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 310 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 329

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 330 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 375

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 376 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 428

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 429 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 488

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 489 NAVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 543

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D E V   
Sbjct: 544 EVPNSDIVCVEVDKEVVEGK 563



 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 138 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 193

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 194 IRR------------------------REDEYRFTKLLQIAGINPHG------------- 216

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 217 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 265

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 266 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 317

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 318 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 377

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 378 TTNILFVASGAFN 390


>gi|322790222|gb|EFZ15221.1| hypothetical protein SINV_05303 [Solenopsis invicta]
          Length = 404

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 167/465 (35%), Gaps = 129/465 (27%)

Query: 6   NFSP--REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------ 45
           +  P  + I   LD+ ++GQ  AKR +++A+ N ++R                       
Sbjct: 9   SMKPILKAIYKYLDKCVVGQLHAKRVLSVAVYNHYKRIYNNQPVAKSLEQTNLVNTQEIN 68

Query: 46  ---------------------DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84
                                D + +L   NI+++GPTG GKT +   +A     PF+  
Sbjct: 69  HLFTDRDLKSSSSNGNLVPKNDKKHQLAKSNIMMIGPTGSGKTLLIETIAEFLNVPFVIC 128

Query: 85  EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT 144
           + +  T+ GY G + E II++L+  A           V EQA                  
Sbjct: 129 DCSALTQSGYYGDDPENIIKNLLQKADG---------VVEQAEKGI-------------- 165

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
                                   V     D     I  G  V    + +   K++    
Sbjct: 166 ------------------------VFLDEVDKIKTMINKGRDVAGEGVQQELLKMLEGT- 200

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS---- 260
                         ++  +++RL D + +  D+  ++      + D  DK++AR      
Sbjct: 201 --------------IIYVKNNRLQDKNEIPVDTTNILFVASGAYSD-LDKLIARRELKKY 245

Query: 261 ----GNGIGVSREGV-QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
                    + +E     D +  +  S        + T  ++              ++PE
Sbjct: 246 PDETSTTKSLDKETATLADDIANISLSERDALIQQVETKDLIKF-----------GMIPE 294

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GRFPV V   +LN+     IL + ++ +I QY+ L   + + L F ++++ A+A +A+
Sbjct: 295 FIGRFPVLVPFHTLNEDVLARILIEPKNAIIPQYQMLFSKDKVKLTFDKNALTAIASLAL 354

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
              +     GAR L+T++E +L +  F        +V I  + VR
Sbjct: 355 EKGT-----GARGLRTIIESLLLEPMFEIPGSDIVSVHITEQCVR 394


>gi|145636237|ref|ZP_01791906.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
 gi|145270402|gb|EDK10336.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae
           PittHH]
          Length = 223

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 139/205 (67%), Gaps = 11/205 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAR 122

Query: 126 ASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A   AEERILDAL+                S+TR+ FRKKLR+G++ DKEI+I+V+   S
Sbjct: 123 AEDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182

Query: 175 DISNFDIPGGASVGILNLSELFSKV 199
                  P G       L  LF  +
Sbjct: 183 MGVEIMAPPGMEEMTNQLQSLFQNL 207


>gi|254445308|ref|ZP_05058784.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
 gi|198259616|gb|EDY83924.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
          Length = 531

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 177/422 (41%), Gaps = 76/422 (18%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRD-ELMPKNILLVG 60
           FN  PREI   LDRY+I Q +AK+ +++A+    N  RR     DL D E   +NI+L+G
Sbjct: 62  FNLKPREIRDYLDRYVIQQNEAKKVISVAICDHFNHVRRCLERPDLGDLEYAKQNIILLG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT + R +A+L G PF+K + TKF+E GY+G +VE ++RDLV  A      ++  
Sbjct: 122 PTGVGKTYLMRNVAKLVGVPFVKADATKFSETGYIGGDVEDLVRDLVKGANGDTELAQY- 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                  I  +E  +D +  K   S  R                   +V+     I+   
Sbjct: 181 -----GIIYIDE--IDKIANKMNGSGGR-------------------DVSGRGVQINLLK 214

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           +     V + + +++  ++      ++ +   +                  T+    I  
Sbjct: 215 LMEDTEVNLQSQTDMMGQMQAMMEMQRGKKKKR------------------TISTKHILF 256

Query: 241 VENYGIVFLDEFDK-IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
           + +      D+ DK I  R +   +G                   ++++   + D     
Sbjct: 257 IVSGAF---DQMDKAIEKRLTNTSMGFG-----------------ASQHSDSDEDENFLD 296

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            +            PE  GR PVRV  + L  +D   I+T +E +++ QY    +  GI 
Sbjct: 297 QAETRDFI-DYGFEPEFVGRLPVRVACQPLKPNDLFEIMTTSEGSVLRQYISDFEGYGIT 355

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+  +DS++ +A+ A    +     GAR L T++ER      F       KT+ +  + +
Sbjct: 356 LEMDKDSLEEVAERAYKEKT-----GARGLMTILERAFRSFKFELPSTSIKTLQVTRDTI 410

Query: 420 RL 421
             
Sbjct: 411 ED 412


>gi|170044440|ref|XP_001849855.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
           quinquefasciatus]
 gi|167867595|gb|EDS30978.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex
           quinquefasciatus]
          Length = 614

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 139/372 (37%), Gaps = 64/372 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 265 LEKSNILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 324

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 325 NYSVDRAQTGIV-----------FLD-----------------------------EVDKI 344

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 345 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTIVNVPERNSPRKLRGETVQ--------- 391

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G        +     + S+       
Sbjct: 392 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 447

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           +  D  L        V     ++PE  GRFPV V   SL+      ILT+  + L+ QYK
Sbjct: 448 VERDANLRKVQAKDLV--EFGMIPEFVGRFPVLVPFHSLDVEMLVRILTEPRNALVPQYK 505

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L F ED++  +A +A+   +     GAR L+ +ME +L +  F       K
Sbjct: 506 ALLGMDQVELTFAEDALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVK 560

Query: 411 TVVIDAEYVRLH 422
           TV I  + VR  
Sbjct: 561 TVHITDDCVRGQ 572


>gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta]
          Length = 588

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 142/374 (37%), Gaps = 66/374 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 251 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 310

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 311 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 330

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    L  L   ++    +   R    +               M
Sbjct: 331 GAIPGIHQLRDVGGEGVQQGMLKMLEGTIVNVPERNSSRKLRGE---------------M 375

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    I  R S    G G   + E   R    L + +++S 
Sbjct: 376 LQVDTTNILFVASGAYSGLDRL--IARRKSEKYLGFGATPAAESPGRRAATLADIANMSP 433

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +L++     ILT+ ++ ++
Sbjct: 434 STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIV 493

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L   + + L F   +++A+A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 494 PQYQMLFSMDKVELTFDVHALNAIASLAMERKT-----GARGLRAIMESLLLEPMFEVPG 548

Query: 407 LQEKTVVIDAEYVR 420
               +V I  + V+
Sbjct: 549 SDIVSVHITEQCVK 562


>gi|326926841|ref|XP_003209605.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Meleagris gallopavo]
          Length = 609

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 140/380 (36%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 260 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 319

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 320 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 339

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 340 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 385

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++  
Sbjct: 386 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNMGKGRRAAAAADLANI 438

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 439 SGESNTHEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVRILTEPR 498

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 499 NAVVPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMF 553

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D + V   
Sbjct: 554 EVPNSDIVCVEVDKDVVEGK 573



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 148 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 203

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 204 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 226

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 227 ------NALGASMQQQMNQQIPQEKRGGEVLDSPNDDIKLEKS-----NILLLGPTGSGK 275

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 276 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 327

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 328 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 387

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 388 TTNILFVASGAFN 400


>gi|158290292|ref|XP_563112.3| AGAP002996-PA [Anopheles gambiae str. PEST]
 gi|157017824|gb|EAL40794.3| AGAP002996-PA [Anopheles gambiae str. PEST]
          Length = 641

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 139/370 (37%), Gaps = 64/370 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 291 LEKSNILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 350

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 351 NYSVERAQTGIV-----------FLD-----------------------------EVDKI 370

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 371 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTIVNVPERNSPRKLRGETVQ--------- 417

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G        +     + S+       
Sbjct: 418 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 473

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           +  D  L        V     ++PE  GRFPV V   SL+      ILT+  + L+ QYK
Sbjct: 474 VERDANLKKVQAKDLV--EFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYK 531

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L FT++++  +A +A+   +     GAR L+ +ME +L +  F       K
Sbjct: 532 ALLGMDQVELSFTDEALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVK 586

Query: 411 TVVIDAEYVR 420
            V I  E VR
Sbjct: 587 GVRITEESVR 596



 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I+  LDR+++GQ+ AK+ +++A+ N ++R    
Sbjct: 180 IMEYLDRHVVGQELAKKVLSVAVYNHYKRIYHN 212


>gi|115396830|ref|XP_001214054.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus
           terreus NIH2624]
 gi|114193623|gb|EAU35323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus
           terreus NIH2624]
          Length = 602

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 95/397 (23%), Positives = 149/397 (37%), Gaps = 62/397 (15%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GP+GVGKT +++ LAR+   PF   + T FT+ GY+G + E  +  L+  A
Sbjct: 170 LEKSNILLLGPSGVGKTLMAKTLARVLSVPFSISDCTPFTQAGYIGEDAEVCVHKLLAAA 229

Query: 111 INIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              V ++ R     DEV + A+            GK  +    +    K+ +G     + 
Sbjct: 230 NYDVEQAERGIIVLDEVDKIAAAKVTH-------GKDVSGEGVQQALLKIIEGTTVQVQA 282

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG------RKKKIRMSVQKCYPEL 219
             E +      +    P  + +G           M         R   I       +  L
Sbjct: 283 KQEKSAPRLGGTPNSFPSNSPLGNPPYPPSGGGNMPQKGEVYNVRTDNILFIFSGAFVGL 342

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            +      + MD + R SI   +            + +  + N             +P++
Sbjct: 343 HK------VIMDRISRGSIGFGQP-----------VRSPTTSNEGSAEARASNHQPIPIL 385

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVS-------------RPADL-----LPEIQGRFP 321
            GS     Y      H+ F  S A   S              P DL     +PE+ GR P
Sbjct: 386 PGSEEEALYK----RHLPFFTSAAAESSDGEPPYFNALDLLNPTDLQNYGFIPELVGRVP 441

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           V   L +L +     ILT+  ++LI QY  L    GI L FT  ++  +A  A  + +  
Sbjct: 442 VTAALSTLTQPLLVRILTEPRNSLIAQYTTLFSLSGIELRFTTPALHKIAGNAFTMGT-- 499

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
              GAR L+T +E +L D  F       K V++    
Sbjct: 500 ---GARALRTELETILSDAMFETPGSSVKFVLVTEAV 533


>gi|5353573|gb|AAD42187.1|AF134983_1 energy-dependent regulator of proteolysis [Mus musculus]
          Length = 632

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 142/379 (37%), Gaps = 74/379 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 285 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 344

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 345 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 364

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 365 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 410

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV----QRDLLPLVEGSS 283
                V   ++  V +     LD    I  R +   +G          +R    L   S 
Sbjct: 411 -----VDTTNVLFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAADLANRSG 463

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
            S  +  I     L     A  +     ++PE  GR PV V L SL++     ILT+  +
Sbjct: 464 ESNTHQDIEEKDRLLRHVEARDLIE-FGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRN 522

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            +I QY+ L   +   L+ TED++ A+A +A+   +     GAR L+++ME++L +  F 
Sbjct: 523 AVIPQYQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMFE 577

Query: 404 ASDLQEKTVVIDAEYVRLH 422
             +     V +D E V   
Sbjct: 578 VPNSDIVCVEVDKEVVEGK 596



 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTP----RELE 228

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 229 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 251

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +   + DI++  +     N  + G    G 
Sbjct: 252 ------NALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKS-----NILLLGPTGSGK 300

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 301 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 352

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 353 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 412

Query: 293 TDHILFIASGAFH 305
           T ++LF+ASGAF+
Sbjct: 413 TTNVLFVASGAFN 425


>gi|195395804|ref|XP_002056524.1| GJ10182 [Drosophila virilis]
 gi|194143233|gb|EDW59636.1| GJ10182 [Drosophila virilis]
          Length = 683

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 104/499 (20%), Positives = 185/499 (37%), Gaps = 120/499 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           ++I+  LD++++GQ+ AK+ +A+A+ N ++R                 L  PT    T  
Sbjct: 198 QKIMEYLDKHVVGQEFAKKVLAVAVYNHYKRIHHNLPQ----------LQQPT----TGS 243

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           +     L G P      T    I  +G  +       +       + ++           
Sbjct: 244 ASAGGGLDGIP-----RTDLLHITGIGHTLNSTPGSELP-----PKPAQMGLGGGLTGSG 293

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           +           +   ++         +     + +D +  D   + SN  + G    G 
Sbjct: 294 S--------GLGSGLHSSASSVGSARNEHRPGSEILDKQSNDVKLEKSNIIMLGPTGSGK 345

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             +++  ++ +       +  ++  C             D+++V    +Q          
Sbjct: 346 TLIAQTIARCLD------VPFAICDCTTLTQAGYVGE--DIESVISKLLQDANYNVERAQ 397

Query: 244 YGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SI 291
            GIVFLDE DKI           V  EGVQ+ +L ++EG+ V+                +
Sbjct: 398 TGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETVQV 457

Query: 292 NTDHILFIASGAF--------------------------------HVSRPAD-------- 311
           +T +ILF+ASGA+                                  + P D        
Sbjct: 458 DTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQEERDK 517

Query: 312 --------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRFPV V   SLN +    ILT+  + L+ QYK L+  + 
Sbjct: 518 CLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKALLGLDE 577

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L FTED+++++A +A+  ++     GAR L+++ME +L D  F       + V I AE
Sbjct: 578 VDLSFTEDAVESIATLAMERHT-----GARGLRSIMETLLLDPMFIVPGSDIRGVHITAE 632

Query: 418 YVRLHIGDF---PSETDMY 433
           YVR +        S+ D  
Sbjct: 633 YVRGNTKPVYIRNSDEDAS 651


>gi|195327500|ref|XP_002030456.1| GM24560 [Drosophila sechellia]
 gi|194119399|gb|EDW41442.1| GM24560 [Drosophila sechellia]
          Length = 667

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 171/471 (36%), Gaps = 144/471 (30%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIAL--------RNRWRRQQLPADLRD----------- 49
           P++I+  LD++++GQ+ AK+ +++A+         N  +R+Q   +  +           
Sbjct: 250 PQKIMEYLDKHVVGQEFAKKVLSVAVYNHYKRIHHNLSQREQTADNAAETLSLCQLNISG 309

Query: 50  --------------------------------------ELMPKNILLVGPTGVGKTAISR 71
                                                 EL   NI+++ PTG GKT I++
Sbjct: 310 DISTLNSASQEKDLIDFGSEQESSTFNWKFPGVQSNDVELEKSNIMMLAPTGSGKTLIAK 369

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            +A+    PF   + T   +  YVG ++E ++  L+  A N V  ++   V         
Sbjct: 370 SIAKCLDVPFAICDCTTLMQADYVGGDIESVLLKLLQDANNDVERAQTGIVYL------- 422

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
              +D +   + +   ++   K L                            G+ V + N
Sbjct: 423 -DEVDQICALSGSKGIQQGMLKMLE---------------------------GSVVSLTN 454

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             +LF K +                                +   +I  V +     LD+
Sbjct: 455 RGQLFGKAV-------------------------------QLDTTNILFVASGAFTGLDK 483

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
              I  R +     V+  G         E                  I   A  +++   
Sbjct: 484 I--IERRINEKNSDVTSTGEAGPPNAHQE-------------RDKCLIKVQACDLAK-FG 527

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE+ G FP+ V   SL+      ILT+  + L+ QYK +++ +G+ L F+ D++ ++A
Sbjct: 528 MIPELVGHFPIIVPFHSLDAYMLFRILTEPPNALVSQYKAMLRLDGVELTFSHDALISVA 587

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +A+      G++GAR L+ +ME++L D  F       + V I A+ V   
Sbjct: 588 QLAMK-----GNMGARGLRPIMEQLLLDPMFLVPGSDIRGVHITADNVMGK 633


>gi|225158969|ref|ZP_03725281.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium
           TAV2]
 gi|224802464|gb|EEG20724.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium
           TAV2]
          Length = 537

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 111/420 (26%), Positives = 177/420 (42%), Gaps = 61/420 (14%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVG 60
           F+  PREI   LDR++I Q +AK+ +++A+ + +   +     PA    +   +NIL++G
Sbjct: 58  FSLKPREIRDHLDRFVIQQAEAKKVLSVAICDHYNHVRQCLETPALRERDYAKQNILVLG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT + R +ARL G PF+K + TKF+E GYVG +V+ I+RDLV  A   V  ++  
Sbjct: 118 PTGVGKTYLMRNIARLIGVPFVKADATKFSETGYVGGDVDDIVRDLVKAADGDVELAQYG 177

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V            +D +  K A++          RD      +I++        + + D
Sbjct: 178 IVY-----------IDEID-KIASAGGPGAPGGGGRDVSGRGVQINL-----LKLMEDTD 220

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           +   +   I    +   ++   G+ +K                        T++   I  
Sbjct: 221 VNLQSQTDIAAQMQAMMELQRGGKPRKR-----------------------TINTRHILF 257

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN-TDHILFI 299
           + +     L E   I  R   N IG +              S+  +    +   +   FI
Sbjct: 258 IVSGAFDKLGE--SIRRRIQSNRIGFAAAAPTTTSTDASPASATESASDYLRYAESRDFI 315

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
             G         + PE  GR PVRV  ++L   D   IL  +E +++ QY+       I 
Sbjct: 316 DYG---------MEPEFVGRLPVRVACQNLTADDLEKILNTSEGSILQQYRADFGGYSID 366

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            + T  ++  +A +A   N+     GAR L TV+ERVL D  F       KT  ID   V
Sbjct: 367 FEITPAAVAEVARLAHRENT-----GARGLMTVLERVLRDFKFELPSTAIKTFRIDPATV 421


>gi|221131979|ref|XP_002167314.1| PREDICTED: similar to ClpX caseinolytic protease X homolog [Hydra
           magnipapillata]
          Length = 683

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 155/384 (40%), Gaps = 68/384 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 345 IDKSNILLLGPTGSGKTLLAQTIAKCLDVPFAMCDCTSLTQAGYVGEDIESVITKLLQEA 404

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V      E+ +Q  I  +E  +D +   +     R+V  + ++ G +  K ++  V 
Sbjct: 405 NYNV------ELAQQGIIFLDE--VDKISCVSGFHQVRDVGGEGVQQGLL--KMLEGTVV 454

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC--YPELMRDESDRLI 228
           +     S         V   N+  + S           R    K   +    + +S+ ++
Sbjct: 455 NVPERTSRKMRGENVPVDTTNIMFVASGAFNGLEDIVRRRQQDKSLGFGSSTKKKSNEIM 514

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           D+ T+ +                            +  S    +  LL  VE        
Sbjct: 515 DLQTISK----------------------------LEPSERSDRDALLAQVEARD----- 541

Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                     I  G         ++PE  GR P+ V + SL+ +    ILT+ ++ LI Q
Sbjct: 542 ---------LIGYG---------MIPEFVGRLPILVSINSLDVNALVTILTEPKNALIPQ 583

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L K + + L FT+D++  +A +A    +     GAR L++++E++L D  F A   +
Sbjct: 584 YQHLFKMDKVDLHFTKDALRKIALLAQERKT-----GARGLKSILEKILLDPMFDAPGSE 638

Query: 409 EKTVVIDAEYVRLHIGDFPSETDM 432
              V ID + V           D+
Sbjct: 639 ISAVYIDEDTVTGKKKPGYETRDI 662


>gi|303232787|ref|ZP_07319472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae PB189-T1-4]
 gi|302481273|gb|EFL44348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae PB189-T1-4]
          Length = 558

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 106/463 (22%), Positives = 171/463 (36%), Gaps = 120/463 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI  EL +Y++GQ+ AKRA+++A+ N +RR     +                     
Sbjct: 146 TPHEIYDELSQYVMGQEQAKRALSVAVYNHYRRIMTNMND-------------------- 185

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
                            E     E G V  +       L    +N  +            
Sbjct: 186 -----------------EAQSEDEHGDVAADAASGKHKLEQAQVNAPKGWLSR------- 221

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                R L+ L  + A S               +      E+A      SN  + G    
Sbjct: 222 -----RKLNELKTEDADSA-----------NADAANADADELATVELAKSNILLLGPTGT 265

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G   L++  ++ +          ++ +    +  D  + L+ +       +   E  GIV
Sbjct: 266 GKTLLAQTLARFLEVPFAIADATTLTEAG-YVGEDVENILLKLINAADGDVDRAE-LGIV 323

Query: 248 FLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTD 294
           ++DE DKI  +     I   VS EGVQ+ LL ++EG++ S            +   INT+
Sbjct: 324 YIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHINTE 383

Query: 295 HILFIASGAF----------------------------------HVSRPADL-----LPE 315
           +ILFI  GAF                                      P DL     +PE
Sbjct: 384 NILFICGGAFVGLDKIVADRIGKQGIGFTGELVRKVDDAQDELLAQVMPQDLHKFGMIPE 443

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV    K L   D   ILT  ++ +I QYK +   EG+ L+F +D+++ +A +A+
Sbjct: 444 FVGRIPVITSTKELTARDLVSILTTPKNAIIKQYKRIFDIEGVELEFEDDALEEIAKLAL 503

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAE 417
             N+     GAR L+ + E+ LE++ F    DL    V+I  +
Sbjct: 504 ERNT-----GARGLRAMCEKTLENVMFDIPSDLSIVKVIITKD 541


>gi|326680427|ref|XP_002667004.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Danio rerio]
          Length = 618

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 143/395 (36%), Gaps = 83/395 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+L+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 273 LEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 332

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 333 NYSVEKAQQGIV-----------FLD-----------------------------EVDKI 352

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 353 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 398

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVST 286
                V   +I  V +     LD    I  R +   +G  +   + +           +T
Sbjct: 399 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANT 451

Query: 287 KYGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
               ++    +        +    DL+     PE  GR PV V L SL++     ILT+ 
Sbjct: 452 SGTEMDAMAEIEEKDRLLRIVEARDLIEFGMIPEFVGRLPVVVPLHSLDEEMLVQILTEP 511

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + ++ QY+ L   +   L+ T D++ A+A +A+   +     GAR L+++ME++L +  
Sbjct: 512 RNAVVPQYQALFSMDKCELNVTSDALRAIARLALERKT-----GARGLRSIMEKLLLEPM 566

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFI 436
           F         V ++ + V+              +I
Sbjct: 567 FEVPQSDIIAVELNKDVVQGKCEP--------RYI 593



 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I + LD++++GQ  AK+ +++A+ N ++R    
Sbjct: 161 IYAYLDKFVVGQSYAKKVLSVAVYNHYKRIYNN 193


>gi|195450106|ref|XP_002072367.1| GK22807 [Drosophila willistoni]
 gi|194168452|gb|EDW83353.1| GK22807 [Drosophila willistoni]
          Length = 683

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 146/379 (38%), Gaps = 82/379 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 335 LEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 394

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 395 NYNVERAQTGIV-----------FLD-----------------------------EVDKI 414

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 415 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 461

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQRDLLPLVEGS 282
             V   +I  V +     LD    I  R           +  G  R   Q    P+    
Sbjct: 462 --VDTTNILFVASGAYTGLDRL--IGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 517

Query: 283 SVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
               K  + +    ++              ++PE  GRFPV V   SLN +    ILT+ 
Sbjct: 518 EERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNINMLVRILTEP 566

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  
Sbjct: 567 RNALVPQYKALLGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPM 621

Query: 402 FSASDLQEKTVVIDAEYVR 420
           F       + V I A+YV+
Sbjct: 622 FIVPGSDIRRVHITADYVK 640



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 25/35 (71%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ+ AK+ +A+A+ N ++R    
Sbjct: 203 QKIMEYLDKHVVGQEFAKKVLAVAVYNHYKRIHHN 237


>gi|321470999|gb|EFX81973.1| hypothetical protein DAPPUDRAFT_302881 [Daphnia pulex]
          Length = 563

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 140/380 (36%), Gaps = 66/380 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 217 LDKSNILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 276

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 277 NYNVDKAQQGIV-----------FLD-----------------------------EVDKI 296

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V           ++       + +  +    +L  +        
Sbjct: 297 GAVPGIHQLRDVGGEGVQ--------QGMLKMLEGTIVNVPERNAPRKLRGETI------ 342

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    +  R +    G G   S     R        + VS+
Sbjct: 343 -QVDTTNILFVASGAYTGLDRI--VSRRKNEKYLGFGASSSGNSAGRRAATQAGMAEVSS 399

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           +     ++   F+ +          ++PE  GRFPV V   SL++     ILT+  + L+
Sbjct: 400 EVADDESERDAFLRAVEARDLIDFGMIPEFVGRFPVIVPFHSLSQDTLVRILTEPRNALV 459

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q++ L   + + L F+ +++ A++  A+   +     GAR L+ +ME +L D  F    
Sbjct: 460 PQFQMLFGMDKVELTFSPEALRAISKQAMEKKT-----GARGLRAIMETLLLDAMFEIPG 514

Query: 407 LQEKTVVIDAEYVRLHIGDF 426
               +V +  + V       
Sbjct: 515 SDIVSVHVTEDAVNGRSQPL 534



 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVGKT 67
           I   L+R++IGQ+ AK+ +++A+ N ++R     P+  +     + +      G G+T
Sbjct: 100 IYEYLNRHVIGQEWAKKVLSVAVYNHYKRIFNNLPSIPKKGNEEQEVPAANQGGRGRT 157


>gi|27374353|gb|AAO01094.1| CG4538-PA [Drosophila willistoni]
          Length = 675

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 146/379 (38%), Gaps = 82/379 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 327 LEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 386

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 387 NYNVERAQTGIV-----------FLD-----------------------------EVDKI 406

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 407 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 453

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQRDLLPLVEGS 282
             V   +I  V +     LD    I  R           +  G  R   Q    P+    
Sbjct: 454 --VDTTNILFVASGAYTGLDRL--IGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 509

Query: 283 SVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
               K  + +    ++              ++PE  GRFPV V   SLN +    ILT+ 
Sbjct: 510 EERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNINMLVRILTEP 558

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  
Sbjct: 559 RNALVPQYKALLGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPM 613

Query: 402 FSASDLQEKTVVIDAEYVR 420
           F       + V I A+YV+
Sbjct: 614 FIVPGSDIRRVHITADYVK 632



 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 25/35 (71%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ+ AK+ +A+A+ N ++R    
Sbjct: 195 QKIMEYLDKHVVGQEFAKKVLAVAVYNHYKRIHHN 229


>gi|148223569|ref|NP_001090028.1| ClpX caseinolytic peptidase X homolog [Xenopus laevis]
 gi|66911151|gb|AAH97522.1| MGC114642 protein [Xenopus laevis]
          Length = 624

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 139/381 (36%), Gaps = 76/381 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 275 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 334

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 335 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 354

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 355 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 400

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS------GNGIGVSREGVQRDLLPLVEG 281
                V   +I  V +     LD    I  R +      G    + +         L   
Sbjct: 401 -----VDTTNILFVSSGAFNGLDRI--ISRRKNEKYLGFGIASNMGKGRRAAAAADLANN 453

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           S  S     I     L     A  +     ++PE  GR PV V L SL++     ILT+ 
Sbjct: 454 SPESNAVQDIEEKDRLLRLVEARDLIE-FGMIPEFVGRLPVVVPLHSLDEQTLVRILTEP 512

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + ++ QY+ L   +   L  +ED++ A+A +A+   +     GAR L+++ME++L +  
Sbjct: 513 RNAVVPQYQALFSMDKCELSISEDALRAIARLALERKT-----GARGLRSIMEKLLLEPM 567

Query: 402 FSASDLQEKTVVIDAEYVRLH 422
           F   +     V +D E V   
Sbjct: 568 FEVPNSDIVCVEVDQEVVEGK 588



 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 119/313 (38%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    ++ I
Sbjct: 163 IFNYLDKYVVGQAFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQASLTP---RESEI 219

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                         + E     L+ +A                   
Sbjct: 220 RRR------------------------ED-EYRFTKLLQIAGISPHG------------- 241

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ +++     +     +I++  +     N  + G    G 
Sbjct: 242 ------NALGASMQQQVNQQMPQERRGGDVLDSNHDEIKLEKS-----NILLLGPTGSGK 290

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 291 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 342

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 343 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 402

Query: 293 TDHILFIASGAFH 305
           T +ILF++SGAF+
Sbjct: 403 TTNILFVSSGAFN 415


>gi|307203708|gb|EFN82674.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Harpegnathos saltator]
          Length = 589

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 143/376 (38%), Gaps = 66/376 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 253 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 312

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 313 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 332

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    L  L   ++    +   R    +                
Sbjct: 333 GAVPGIHQLRDVGGEGVQQGMLKMLEGTIVNVPERNSSRKLRGETL-------------- 378

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    I  R +    G G   + E   R    L + +++S 
Sbjct: 379 -QVDTTNILFVASGAYNGLDRL--ISRRKTEKYLGFGAKPTAESPGRRAATLADVANMSP 435

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +L++     ILT+ ++ ++
Sbjct: 436 STERDNKEKDMLLQQVEARDLIDFGMIPEFVGRFPVLVPFHTLDRDMLVRILTEPKNAIV 495

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q++ L   + + L F  ++++A+A +A+   +     GAR L+ +ME +L D  F    
Sbjct: 496 PQFQMLFSMDKVELTFDINALNAIASLAMERKT-----GARGLRAIMESLLLDPMFEVPG 550

Query: 407 LQEKTVVIDAEYVRLH 422
               +V I  + V+ H
Sbjct: 551 SDVMSVHITEQCVKGH 566



 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 22/33 (66%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I   L+++++GQ+ AK+ +++A+ N ++R    
Sbjct: 143 IFEYLNKHVVGQEYAKKVLSVAVYNHYKRIYNN 175


>gi|224062774|ref|XP_002200002.1| PREDICTED: ClpX caseinolytic protease X homolog [Taeniopygia
           guttata]
          Length = 630

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 140/380 (36%), Gaps = 74/380 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 281 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 340

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              + ++++  V            LD                             +++  
Sbjct: 341 NYNIEKAQQGIV-----------FLD-----------------------------EVDKI 360

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 361 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 406

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++  
Sbjct: 407 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNMGKGRRAAAAADLANI 459

Query: 288 YGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  +    +             DL+     PE  GR PV V L SL++     ILT+  
Sbjct: 460 SGESDPQEDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVRILTEPR 519

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY+ L   +   L+ TED++ A+A +A++  +     GAR L+++ME++L +  F
Sbjct: 520 NAVVPQYQALFSMDKCELNVTEDALKAIARLALDRKT-----GARGLRSIMEKLLLEPMF 574

Query: 403 SASDLQEKTVVIDAEYVRLH 422
              +     V +D + V   
Sbjct: 575 EVPNSDIVCVEVDKDVVEGK 594



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +P++LR +   +    + P    +   
Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPSNLRQQAEVEKQSSLTP----RELE 224

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 225 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 247

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 248 ------NALGASMQQQMNQQIPQEKRGGEVLDSPNDDIKLEKS-----NILLLGPTGSGK 296

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 297 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNIEKAQ 348

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 349 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 408

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 409 TTNILFVASGAFN 421


>gi|195112088|ref|XP_002000608.1| GI10327 [Drosophila mojavensis]
 gi|193917202|gb|EDW16069.1| GI10327 [Drosophila mojavensis]
          Length = 672

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 147/376 (39%), Gaps = 64/376 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 318 LEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 377

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 378 NYNVERAQTGIV-----------FLD-----------------------------EVDKI 397

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 398 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 444

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G              + ++       
Sbjct: 445 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 500

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
              D  L        V     ++PE  GRFPV V   SLN +    ILT+  + L+ QYK
Sbjct: 501 EERDKCLTKVQARDLV--EFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYK 558

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L FTED+++++A +A+  ++     GAR L+++ME++L D  F       +
Sbjct: 559 ALLGLDEVDLSFTEDAVESIASLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 613

Query: 411 TVVIDAEYVRLHIGDF 426
           +V I A+YVR +    
Sbjct: 614 SVHITADYVRGNSKPI 629



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 189 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 223


>gi|156358407|ref|XP_001624511.1| predicted protein [Nematostella vectensis]
 gi|156211296|gb|EDO32411.1| predicted protein [Nematostella vectensis]
          Length = 506

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 139/375 (37%), Gaps = 68/375 (18%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 187 LDKSNILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYVGEDIESVIAKLLQEA 246

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 247 GGNVEKAQQGIV-----------FLD-----------------------------EVDKI 266

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                + N    GG  V    L  L   V+    +   +M                  D 
Sbjct: 267 GAVPGVHNLRDVGGEGVQQGLLKILEGTVVNVPERNSRKMRG----------------DT 310

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL-----PLVEGSSVS 285
             V   +I  V +     LD+   I  R     +G     +          P+   S+V 
Sbjct: 311 VAVDTSNILFVASGAFNGLDKI--IRRRKQDKVLGFGAPAIHHLDKASHDSPIDIFSAVK 368

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           +     N +    + S          ++PE  GR PV V L SL++     ILT+  + L
Sbjct: 369 SDVRDDNAERDALLRSVEAKDLIDFGMIPEFIGRLPVVVSLHSLDEDTLVKILTEPRNVL 428

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY+ L   + + L    D++  +A  A+   +     GAR L+ ++E +L D  F A 
Sbjct: 429 VPQYQALFAMDKVDLQLESDALQLIAQQALEKKT-----GARGLRAILENLLLDPMFDAP 483

Query: 406 DLQEKTVVIDAEYVR 420
                TV I  + VR
Sbjct: 484 GSDIVTVRITEDVVR 498


>gi|27374215|gb|AAO00979.1| CG4538-PA [Drosophila erecta]
          Length = 672

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 147/389 (37%), Gaps = 82/389 (21%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 314 ILDRQSSDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 373

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 374 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 398

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 399 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 449

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 450 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 496

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 497 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 545

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 546 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 600

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +ME++L D  F       + V I A+YV+
Sbjct: 601 IMEQLLLDPMFIVPGSDIRGVHITADYVK 629



 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|195498060|ref|XP_002096364.1| GE25106 [Drosophila yakuba]
 gi|194182465|gb|EDW96076.1| GE25106 [Drosophila yakuba]
          Length = 672

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 146/379 (38%), Gaps = 82/379 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 324 LEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 383

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 384 NYNVERAQTGIV-----------FLD-----------------------------EVDKI 403

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 404 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 450

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQRDLLPLVEGS 282
             V   +I  V +     LD    I  R           +  G  R   Q    P+    
Sbjct: 451 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506

Query: 283 SVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
               K  + +    ++              ++PE  GRFPV V   SLN S    ILT+ 
Sbjct: 507 EERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNVSMLVRILTEP 555

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D  
Sbjct: 556 RNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPM 610

Query: 402 FSASDLQEKTVVIDAEYVR 420
           F       + V I A+YV+
Sbjct: 611 FIVPGSDIRGVHITADYVK 629



 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|194899883|ref|XP_001979487.1| GG15775 [Drosophila erecta]
 gi|190651190|gb|EDV48445.1| GG15775 [Drosophila erecta]
          Length = 672

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 147/389 (37%), Gaps = 82/389 (21%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 314 ILDRQSSDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 373

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 374 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 398

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 399 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 449

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 450 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 496

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 497 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 545

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 546 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 600

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +ME++L D  F       + V I A+YV+
Sbjct: 601 IMEQLLLDPMFIVPGSDIRGVHITADYVK 629



 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|52219008|ref|NP_001004581.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial [Danio rerio]
 gi|51859089|gb|AAH81643.1| Zgc:92303 [Danio rerio]
          Length = 610

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 157/463 (33%), Gaps = 135/463 (29%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRDELMPKNIL--- 57
           I + LD+Y++GQ  AK+ +++A+ N ++R           QQ+  + +  L P+ +L   
Sbjct: 161 IFAYLDKYVVGQDHAKKVLSVAVYNHYKRIYNNMPAGSRQQQVEVEKQASLTPRELLQIA 220

Query: 58  -----------------------------LVGPTGV------------GKTAISRRL--- 73
                                        ++  T              G T   + L   
Sbjct: 221 GISPHGNALGASMQQQLNQQTPPEKRGGEVLDSTHTDIKLEKSNIVLLGPTGSGKTLLAQ 280

Query: 74  --ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A+    PF   + T  T+ GYVG ++E +I  L+  A  ++ ++++  V         
Sbjct: 281 TLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVIEKAQQGIV--------- 331

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
              LD                             +++   +   I      GG  V    
Sbjct: 332 --FLD-----------------------------EVDKIGSVPGIHQLRDVGGEGVQQGL 360

Query: 192 LS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
           L         V     +K    +V                    V   +I  V +     
Sbjct: 361 LKLLEGTIVNVPEKNTRKLRGETV-------------------QVDTTNILFVASGAFNG 401

Query: 249 LDEFDKIVARDSGNGIGV-SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
           LD    I  R +   +G  +   + +           +T  G ++    +          
Sbjct: 402 LDRI--ISRRKNEKYLGFGTPSNMGKGRRAAAAADLANTTGGEVDAVAEIEEKDRLLKHV 459

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
              DL     +PE  GR PV V L SL++     ILT+  + ++ QY+ L   +   L+ 
Sbjct: 460 EARDLIEFGMIPEFVGRLPVVVPLHSLDEETLVRILTEPRNAVVPQYQALFSMDKCELNM 519

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           T D++ A+A +A+   +     GAR L+++ME++L D  F   
Sbjct: 520 TPDALRAIARLALERKT-----GARGLRSIMEKLLLDPMFEVP 557


>gi|294053547|ref|YP_003547205.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293612880|gb|ADE53035.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 533

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 179/421 (42%), Gaps = 74/421 (17%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLV 59
           +FN  P+EI   L+RY+I Q +AK+ +++A+ + +   +      AD   E   +NILL+
Sbjct: 66  SFNLKPKEIRDYLNRYVIRQDEAKKVISVAICDHYNHVRQQISGKADSSTEYSKQNILLL 125

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT + + +ARL G PF+K + TKF+E GYVG +V+ ++RDLV  A   V  ++ 
Sbjct: 126 GPTGVGKTYLIKNIARLIGVPFVKADATKFSETGYVGNDVDDLVRDLVKAAGGDVELAQY 185

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +            LD +    +  +                     +V+     I+  
Sbjct: 186 GII-----------FLDEIDKIASEGSPGGR-----------------DVSGRGVQINLL 217

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            +     V + + +++ S++      ++      K                 T+   +I 
Sbjct: 218 KLMEETEVNLFSPTDMMSQMQAVMEMQRGGKPRPK-----------------TISTRNIL 260

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            + +     L E   I  R S N +G        D  P        +KY   + +   FI
Sbjct: 261 FIVSGAFDKLGE--SIQKRMSQNEMGFGANVRDDDEDP--------SKYLQ-HAETRDFI 309

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
             G           PE  GR P+RV  +SLN  D   ILT +E +++ QY++     GI 
Sbjct: 310 KYG---------FEPEFIGRVPIRVACESLNTDDLASILTSSEGSILNQYRDDFHGYGID 360

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
            + ++++I  LA  A          GAR L TV+ER+  +  F       K+  +D E +
Sbjct: 361 FNISKEAIRTLAAHASK-----ERTGARGLMTVLERLFRNFKFELPSTAIKSFDVDVETI 415

Query: 420 R 420
            
Sbjct: 416 E 416


>gi|325142574|gb|EGC64970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis 961-5945]
          Length = 341

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 143/348 (41%), Gaps = 73/348 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKGDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                L+PE+ GR PV   L+ L++     ILT+ ++ L+ QY+ L  
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFG 341


>gi|156550057|ref|XP_001605256.1| PREDICTED: similar to ATP-dependent clp protease atp-binding
           subunit clpx [Nasonia vitripennis]
          Length = 592

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 144/376 (38%), Gaps = 66/376 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 253 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 312

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 313 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 332

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    + ++    + +  ++     ++               D 
Sbjct: 333 GAVPGIHQLRDVGGEGVQQ-GMLKMLEGTIVNVPERNSSRKLRG--------------DT 377

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             V   +I  V +     LD    +  R +    G G   + E   R    L + +++S 
Sbjct: 378 LQVDTTNILFVASGAYNGLDRL--VSRRKNEKYLGFGATPASESPGRRAASLADVANMSP 435

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +LN+     ILT+ ++ ++
Sbjct: 436 STEDDNKEKDVLLRQVEARDLIDFGMIPEFVGRFPVLVPFHTLNREMLVRILTEPKNAMV 495

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L   + + L FT +++DA+A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 496 PQYQMLFSMDKVELTFTPEALDAIASMAMERKT-----GARGLRAIMESLLLEPMFDVPG 550

Query: 407 LQEKTVVIDAEYVRLH 422
                V +    VR  
Sbjct: 551 SDVVMVHVTEGCVRGQ 566



 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 108/312 (34%), Gaps = 79/312 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   L+++++GQ+ AK+ +++A+ N ++R      L                  +T  + 
Sbjct: 144 IFEYLNKHVVGQEYAKKVLSVAVYNHYKRIHNNLPL--------------QNAAQTNAAP 189

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
              +    PF   +      I  +G     +      V     ++ +             
Sbjct: 190 VGNQDLNHPFTHRD---LLHISSIGN---SLGVGFQHVPPGNDQQQK------------- 230

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                        +  + V    + D +    +++          SN  + G    G   
Sbjct: 231 -----------PPAGAQSVPGSDILDSKHHQLKLE---------KSNILLLGPTGSGKTL 270

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYG 245
           L++  ++ +       +  ++  C             D+++V    +Q           G
Sbjct: 271 LAQTIAQCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYVVDRAQMG 322

Query: 246 IVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293
           IVFLDE DKI           V  EGVQ+ +L ++EG+ V+                ++T
Sbjct: 323 IVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTIVNVPERNSSRKLRGDTLQVDT 382

Query: 294 DHILFIASGAFH 305
            +ILF+ASGA++
Sbjct: 383 TNILFVASGAYN 394


>gi|24648291|ref|NP_732463.1| CG4538, isoform B [Drosophila melanogaster]
 gi|23171759|gb|AAN13814.1| CG4538, isoform B [Drosophila melanogaster]
          Length = 673

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 83/401 (20%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 315 ILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 374

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 375 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 399

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 400 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 450

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 451 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 497

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 498 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 546

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 547 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 601

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR-LHIGDFPSETD 431
           +ME++L D  F       + V I A+YV+     ++  + D
Sbjct: 602 IMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDAD 642



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|312375337|gb|EFR22728.1| hypothetical protein AND_14288 [Anopheles darlingi]
          Length = 699

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 139/377 (36%), Gaps = 69/377 (18%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 338 LEKSNILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 397

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 398 NYSVERAQTGIV-----------FLD-----------------------------EVDKI 417

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 418 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTIVNVPERNSPRKLRGETVQ--------- 464

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G        +     + S+       
Sbjct: 465 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 520

Query: 291 INTDHIL-------FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
              D  L        +  G   VS    +  E  GRFPV V   SL+      ILT+  +
Sbjct: 521 AERDANLKKVQAKDLVEFGMIPVSAMEAIAIEFVGRFPVLVPFHSLDVDMLVRILTEPRN 580

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QYK L+  + + L FT++++  +A +A+   +     GAR L+ +ME +L +  F 
Sbjct: 581 ALVPQYKALLGMDQVELSFTDEALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFE 635

Query: 404 ASDLQEKTVVIDAEYVR 420
                 K V I  E VR
Sbjct: 636 VPGSDVKGVSITEESVR 652



 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I+  LDR+++GQ  AK+ +++A+ N ++R    
Sbjct: 226 IMEYLDRHVVGQDLAKKVLSVAVYNHYKRIYHN 258


>gi|195353554|ref|XP_002043269.1| GM26887 [Drosophila sechellia]
 gi|194127383|gb|EDW49426.1| GM26887 [Drosophila sechellia]
          Length = 673

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 83/401 (20%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 315 ILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 374

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 375 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 399

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 400 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 450

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 451 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 497

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 498 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 546

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 547 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 601

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR-LHIGDFPSETD 431
           +ME++L D  F       + V I A+YV+     ++  + D
Sbjct: 602 IMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDAD 642



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|24648289|ref|NP_650843.1| CG4538, isoform A [Drosophila melanogaster]
 gi|23171758|gb|AAF55713.2| CG4538, isoform A [Drosophila melanogaster]
 gi|189182138|gb|ACD81845.1| LD11650p [Drosophila melanogaster]
          Length = 673

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 83/401 (20%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 315 ILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 374

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 375 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 399

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 400 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 450

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 451 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 497

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 498 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 546

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 547 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 601

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR-LHIGDFPSETD 431
           +ME++L D  F       + V I A+YV+     ++  + D
Sbjct: 602 IMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDAD 642



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|195569578|ref|XP_002102786.1| GD20094 [Drosophila simulans]
 gi|194198713|gb|EDX12289.1| GD20094 [Drosophila simulans]
          Length = 673

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 83/401 (20%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 315 ILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 374

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 375 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 399

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 400 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 450

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQ 272
           +           V   +I  V +     LD    I  R           +  G  R   Q
Sbjct: 451 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 497

Query: 273 RDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
               P+        K  + +    ++              ++PE  GRFPV V   SLN 
Sbjct: 498 SAASPMDNDQEERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNV 546

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
           S    ILT+  + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L++
Sbjct: 547 SMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRS 601

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVR-LHIGDFPSETD 431
           +ME++L D  F       + V I A+YV+     ++  + D
Sbjct: 602 IMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDAD 642



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 193 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 227


>gi|301118793|ref|XP_002907124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
           infestans T30-4]
 gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora
           infestans T30-4]
          Length = 692

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 110/480 (22%), Positives = 185/480 (38%), Gaps = 100/480 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------QLPADLRDELMPKNILLVG 60
            +PREI   L+ Y+IGQ   K+ +A+ + N ++R       Q   +        N     
Sbjct: 219 LTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQH 278

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           P   G T   + +      P                  +  I R L+   I    +    
Sbjct: 279 PRAGGVTR--QHVD--MDDP-----------------RLSNIGRRLLLEEIYPGSDKNDA 317

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+   +  +A E         T T+ T      +L+   + DK   +E      D +N  
Sbjct: 318 EMPPTSKQHASE----ETAEVTKTTETTHTHATRLQHHSMGDKLQYLE--GVELDKTNVM 371

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDMDTVHRDSI 238
           + G    G   L++  +++            + +        ES   +L      + ++ 
Sbjct: 372 LVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEAT 431

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---------- 286
           Q     GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS V+           
Sbjct: 432 QR----GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPR 487

Query: 287 -KYGSINTDHILFIASGAF-------------------------------------HVSR 308
            ++ +I+T +ILFI  GAF                                       + 
Sbjct: 488 GEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQAE 547

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GRFP+ V    L+K +   +LT+ +++L+ QYK L     +    T
Sbjct: 548 PEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHAT 607

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           E +++A+A+ A+  N+     GAR L+++ ER L +  F   D+ +   V +D E +  H
Sbjct: 608 EGALEAVAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGH 662


>gi|153826369|ref|ZP_01979036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
 gi|149739847|gb|EDM54038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
          Length = 363

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 136/369 (36%), Gaps = 75/369 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY  L   + +I  F  
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFDWKTLIWSFVR 354

Query: 365 DSIDALADV 373
            +    A  
Sbjct: 355 CAESDAAKA 363


>gi|7801087|emb|CAB91482.1| related to MCX1 protein [Neurospora crassa]
          Length = 563

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/496 (21%), Positives = 173/496 (34%), Gaps = 126/496 (25%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLP----------------- 44
            F PR++   +D Y++GQ  AK+ +   + N +    RRQ                    
Sbjct: 65  QFYPRDLKRRVDDYVVGQDRAKKTICSVIFNHYQNIRRRQHHEIQDQRQREKLQRQRYAR 124

Query: 45  ----------------------------------ADLRDELMPKNILLVGPTGVGKTAIS 70
                                             A  R ++   N+LL+GPTGVGKT I 
Sbjct: 125 DHRDLQDREGYSGSSRDIHPTPSVDDFYIPEDTNAPQRVKIDKSNLLLIGPTGVGKTYIL 184

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
             L++    PF   +   FT+ GY+G++VE  I  L+  A   V+ +    V        
Sbjct: 185 ETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLLIEANYDVKAAEHGIV-------- 236

Query: 131 EERILDALVG--KTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGGA 185
              +LD      +  T N R+V  + ++   +   E   + + V D  S           
Sbjct: 237 ---VLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVTVSVKDHRSSRPPPPPNLNI 293

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
           S      +                                  ++   V   +I  V    
Sbjct: 294 STPGYGPTSTTPSATPGK------------------------VEQYIVDTSNILFVFCGA 329

Query: 246 IVFLDEFDKIVARDSGNGIGVSRE---------GVQRDLLPLVEGSSVS--TKYGSINTD 294
            V LD+   ++ R +   IG   E            +D+LP    S +        ++  
Sbjct: 330 FVGLDK--TVLRRVAKPSIGFGAEVRNHRGSSMSSSQDILPPELYSHLPHQPPTMPVDLS 387

Query: 295 HILFIASGA-----FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                + GA       ++ PADL     +PE+ GR      L  L+  +   ILT+  ++
Sbjct: 388 GGSLASHGAGGFTPLDLASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNS 447

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QY  L +T    L FT  ++ A+A+ A    +     GAR L+  MERVL +  + A
Sbjct: 448 LVAQYTALFETYPSKLYFTRKALYAIAERAAKNET-----GARGLKMEMERVLAEPMYDA 502

Query: 405 SDLQEKTVVIDAEYVR 420
                  V+I    V+
Sbjct: 503 P---MPYVLITEGCVK 515


>gi|194741360|ref|XP_001953157.1| GF17351 [Drosophila ananassae]
 gi|190626216|gb|EDV41740.1| GF17351 [Drosophila ananassae]
          Length = 675

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 146/379 (38%), Gaps = 82/379 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 327 LEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 386

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 387 NYNVERAQTGIV-----------FLD-----------------------------EVDKI 406

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 407 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 453

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR--------DSGNGIGVSREGVQRDLLPLVEGS 282
             V   +I  V +     LD    I  R           +  G  R   Q    P+    
Sbjct: 454 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 509

Query: 283 SVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
               K  + +    ++              ++PE  GRFPV V   SLN S    ILT+ 
Sbjct: 510 EERDKCLTKVQARDLVEF-----------GMIPEFVGRFPVIVPFHSLNISMLVRILTEP 558

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + L+ QYK L+  + + L FT+D++ ++A +A+  ++     GAR L+++ME++L D  
Sbjct: 559 RNALVPQYKALLGLDDVDLTFTDDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPM 613

Query: 402 FSASDLQEKTVVIDAEYVR 420
           F       + V I A+YV+
Sbjct: 614 FIVPGSDIRGVHITADYVK 632



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 194 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 228


>gi|255719754|ref|XP_002556157.1| KLTH0H06380p [Lachancea thermotolerans]
 gi|238942123|emb|CAR30295.1| KLTH0H06380p [Lachancea thermotolerans]
          Length = 508

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/474 (21%), Positives = 183/474 (38%), Gaps = 118/474 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------RRQ------------------- 41
           SP+E+   LD Y++GQ   K+ +++A+ N +       +R                    
Sbjct: 32  SPKELRKFLDNYVVGQTTGKKVLSVAVYNHYLRVNDKQKRIDAKLQRELLEKQQQEDDKD 91

Query: 42  ------------------------QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
                                     P D   EL   N+L+VGP+G GKT ++  LAR+ 
Sbjct: 92  EPIYTGSNEAKVGFQNLQTQLARGMDPKDDDLELSKSNVLVVGPSGSGKTLLASTLARVL 151

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I  L+  A   V ++ R        I   +  LD 
Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAER-------GIIVLDE-LDK 203

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELF 196
           L    A+  T++V  + ++   +   E   IEV          D      V         
Sbjct: 204 LAKPAASIGTKDVSGEGVQQALLKILEGHSIEVTVKRPINKKKDGQNNNQVS-------- 255

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                    KK    V                    V   +I  +     V LD+   +V
Sbjct: 256 --------AKKDETFV--------------------VDTSNILFMLMGAFVGLDK--HVV 285

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG----AFHVSRPADL 312
            R +      + E ++         S  S +    NT   + +++G    A +++ P DL
Sbjct: 286 KRINRLKAISNGETIEDK-------SEDSKRLRFSNTIEKVELSNGKKVSALNLATPTDL 338

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE+ GR P+   L+ L ++D   IL + ++ L+ QY+ + K  G+ L  TE ++
Sbjct: 339 VAYGLIPELIGRVPIITALEPLERTDLYHILREPKNALLNQYEYIFKQFGVKLCVTEKAL 398

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
             +A  A++        GAR L+ +MER+L ++++         V+++ + V+ 
Sbjct: 399 MKVAHFALD-----EGTGARGLRGIMERLLLNVNYECPGSGISYVLVNEDTVKS 447


>gi|260813876|ref|XP_002601642.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
 gi|229286941|gb|EEN57654.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae]
          Length = 664

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 147/378 (38%), Gaps = 76/378 (20%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 294 LEKSNILLLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADA 353

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 354 NYNVDKAQQGIV-----------FLD-----------------------------EVDKI 373

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +   I      GG  V    L +L    + +  ++  R    +  P             
Sbjct: 374 GSVPGIHQLRDVGGEGVQQ-GLLKLLEGTVVNVPERNTRKLRGESVP------------- 419

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS---------REGVQRDLLPLVEG 281
             V   +I  V +     LD    I  R     +G           R     D+  + EG
Sbjct: 420 --VDTTNILFVASGAFNGLDRI--ISRRRHEKYLGFGAPANISPGRRAATASDVQSMTEG 475

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++        N +    +A           ++PE  GR PV V L+SL+++    ILT  
Sbjct: 476 TNAQAD----NEEKDAMLAHVQARDLIEFGMIPEFVGRLPVVVALQSLSQAMLVRILTQP 531

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY+ L + + + L+ ++D+++A+A +A+   +     GAR L+ +ME +L D  
Sbjct: 532 RNALIPQYQALFQMDKVQLEVSDDALEAIAQLALERKT-----GARGLRAIMETLLLDPM 586

Query: 402 FSASDLQEKTVVIDAEYV 419
           F         V ++ E +
Sbjct: 587 FEVPGSDIVGVRLEKEVI 604


>gi|66511659|ref|XP_394615.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit
           clpX-like, mitochondrial-like [Apis mellifera]
          Length = 586

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 150/397 (37%), Gaps = 73/397 (18%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 250 LEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 309

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             +V  ++   V            LD                             +++  
Sbjct: 310 NYVVDRAQMGIV-----------FLD-----------------------------EVDKI 329

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V    + ++    + +  ++     ++               D 
Sbjct: 330 GAVPGIHQLRDVGGEGVQQ-GMLKMLEGTIVNVPERNSSRKLRG--------------DT 374

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVST 286
             +   +I  V +     LD    I  R +    G G   S E   R    L + +++S 
Sbjct: 375 LQIDTTNILFVASGAYNGLDRL--ISRRKTEKYLGFGASRSLESPGRRAANLADVANMSP 432

Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                N +  + +            ++PE  GRFPV V   +L+K+    ILT+ ++ +I
Sbjct: 433 STEKDNKEKDVLLQQVEARDLIDFGMIPEFVGRFPVLVPFHTLDKNMLVRILTEPQNAMI 492

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+ L   + + L FT ++++A+A +A+   +     GAR L+ +ME +L +  F    
Sbjct: 493 PQYQMLFSMDKVDLTFTSEALNAIASLAMEKKT-----GARGLRAIMESLLLEPMFEVPG 547

Query: 407 LQEKTVVIDAEYVRL-------HIGDFPSETDMYHFI 436
               +V +    VR          GD   E      I
Sbjct: 548 SDVMSVHVTEGCVRGQEKPQYIRKGDVTEEELHAQHI 584



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I   L++++IGQ+ AK+ +++A+ N ++R    
Sbjct: 140 IFEYLNKHVIGQEYAKKVLSVAVYNHYKRIYNN 172


>gi|156836523|ref|XP_001642319.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112819|gb|EDO14461.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 496

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 105/480 (21%), Positives = 198/480 (41%), Gaps = 124/480 (25%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRW------------------------------ 38
           PR++   LD YIIGQ+++K+ +++A+ N +                              
Sbjct: 29  PRDLKLFLDEYIIGQENSKKVLSVAVYNHYLRIHDRQRKLDLLKQRQTLEEQLKEKDSEI 88

Query: 39  ----------------------RRQ--QLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
                                 RRQ      D   EL   N+L+VGPTG GKT ++  LA
Sbjct: 89  GNGSNISGSQLNSEAMAGLKNLRRQLESFKEDEDLELSKSNVLVVGPTGSGKTLLATTLA 148

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
           R+   P    + T+ T+ GY+G +VE+ +  L+  A   V ++ +  +           +
Sbjct: 149 RVLEVPIAISDCTQLTQAGYIGDDVEKCVERLLINADFDVAKAEKGII-----------V 197

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
           LD                           EID ++A ++++I + D+ G           
Sbjct: 198 LD---------------------------EID-KLAKSTNNIMSKDVSGEG--------- 220

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE--- 251
           +   ++      K+ +SV++       D+S++      + +D   +++   I+F+     
Sbjct: 221 VQQSLLKLIEGHKVEISVKRPVKVDKDDKSNK----TAMKKDETFVIDTSNILFMIMGAF 276

Query: 252 --FDKIVARDSGNGIGVSR--EGVQRDLLPLVEGSSVSTKYGSINTDHILF-IASGAFHV 306
              DK VA    N   +++  E  Q      +E     T+Y  I    I       A ++
Sbjct: 277 VGLDKHVANRIKNMKELTKVHEKDQPKEQEEIENKERETEYKGIEEVEISEGKKVPALNL 336

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
           + PADL     +PE+ GR P+   L+ L + D   IL + ++ L+ QY+ + K  G+ L 
Sbjct: 337 TTPADLVRFGIIPELVGRVPIITALQPLKEEDLYNILREPKNALLYQYEYIFKQFGVKLL 396

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
            TE ++  +A++++         GAR L+ +MER+L ++++     +   V+++ + V  
Sbjct: 397 VTEKALKKVAEISLK-----EGTGARGLRGIMERLLLNVNYECPGSEISYVLVNEDTVNS 451


>gi|72028078|ref|XP_797563.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli)
           [Strongylocentrotus purpuratus]
 gi|115950156|ref|XP_001175999.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli)
           [Strongylocentrotus purpuratus]
          Length = 615

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 166/430 (38%), Gaps = 76/430 (17%)

Query: 6   NFSPREI-----VSELDRYI---IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           NF+PRE+     +S     +    GQQ A+       ++R            +L   NIL
Sbjct: 223 NFTPRELLQLAGISNQGNALGASSGQQGAQGPTETDHQHRGSELLYANVFDLKLDKSNIL 282

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT +++ +A     PF   + T  T+ GYVG ++E +I  L+  A   V ++
Sbjct: 283 MLGPTGSGKTLLAQTIATCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADANFNVEKA 342

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           ++  +            LD                             +++       I 
Sbjct: 343 QQGII-----------FLD-----------------------------EVDKIGAVPGIH 362

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                GG  V    L +L    + +  ++  R    +  P               V   +
Sbjct: 363 QLRDVGGEGVQQ-GLLKLLEGTVVNVPERSSRKLRGESVP---------------VDTTN 406

Query: 238 IQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           I  V +     LD    I  R      G G      Q      +   +  ++  S   D+
Sbjct: 407 ILFVASGAFNGLDRI--ISRRKQQKYLGFGAPANESQGRRAASIADQTNQSEGSSAKEDN 464

Query: 296 ILFIASGAFHVSRPA---DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
               A      SR      ++PE  GRFP+ V L SL++   + ILT+  + +I Q++ L
Sbjct: 465 EEKDAMLRLVESRDMIEFGMIPEFVGRFPIFVSLGSLDEEMLQRILTEPRNAIIPQFEAL 524

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            K +   L  T+D++ A+A +A+   +     GAR L+++ME +L +  F       + V
Sbjct: 525 FKMDSCQLTITDDALKAVAQLALERKT-----GARGLRSIMEIILLESMFEIPGSDIEEV 579

Query: 413 VIDAEYVRLH 422
           ++DAE V+  
Sbjct: 580 IVDAEVVQGR 589



 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 29/54 (53%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           ++I   LD++++GQ  AK+ +++A+ N ++R         +    ++   G +G
Sbjct: 169 KKIYDYLDKFVVGQSQAKKVLSVAVYNHYKRIYNNIPAPAQKNGGDVEGKGQSG 222


>gi|15292275|gb|AAK93406.1| LD45279p [Drosophila melanogaster]
          Length = 478

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 145/380 (38%), Gaps = 64/380 (16%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
                    +L   NI+++GPTG GKT I++ +A+    PF   + T  T+ GYVG ++E
Sbjct: 120 ILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIE 179

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            +I  L+  A   V  ++   V            LD                        
Sbjct: 180 SVISKLLQDANYNVERAQTGIV-----------FLD------------------------ 204

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                +++       I      GG  V       +   + G+      R S +K   E +
Sbjct: 205 -----EVDKIGAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETV 255

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           +           V   +I  V +     LD    I  R +   +G              +
Sbjct: 256 Q-----------VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQ 302

Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            ++          D  L        V     ++PE  GRFPV V   SLN S    ILT+
Sbjct: 303 SAASPMDNDQEERDKCLTKVQARDLV--EFGMIPEFVGRFPVIVPFHSLNVSMLVRILTE 360

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + L+ QYK L+  + + L FTED++ ++A +A+  ++     GAR L+++ME++L D 
Sbjct: 361 PRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDP 415

Query: 401 SFSASDLQEKTVVIDAEYVR 420
            F       + V I A+YV+
Sbjct: 416 MFIVPGSDIRGVHITADYVK 435



 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
            LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 2  EYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 32


>gi|223648098|gb|ACN10807.1| ATP-dependent Clp protease ATP-binding subunit clpX-like,
           mitochondrial precursor [Salmo salar]
          Length = 627

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 74/377 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+L+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 277 LEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 336

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 337 NYSVDKAQQGIV-----------FLD-----------------------------EVDKI 356

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +VQ              
Sbjct: 357 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ-------------- 402

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS-----REGVQRDLLPLVEGS 282
                V   +I  V +     LD    +  R +   +G        +G +      +  S
Sbjct: 403 -----VDTTNILFVASGAFNGLDRI--VSRRKNEKYLGFGTPSNMGKGRRAAAAADLANS 455

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
           S  T   +   +    +            ++PE  GR PV V L SL++     ILT+  
Sbjct: 456 SEQTDMVAEMEEKDRLLKLVEARDLIEFGMIPEFVGRLPVVVPLHSLDEETLVRILTEPR 515

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + +I QY+ L   +   L+ T +++ A+A +A+   +     GAR L+++ME++L +  F
Sbjct: 516 NAVIPQYQALFNMDKCELNVTTEALRAIARLALERKT-----GARGLRSIMEKLLLEPMF 570

Query: 403 SASDLQEKTVVIDAEYV 419
                    V +  + V
Sbjct: 571 EVPCSDIMAVELTKDVV 587



 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 82/314 (26%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I + LD+Y++GQ  AK+ +A+A+ N ++R              NI    P G  +  + +
Sbjct: 166 IYAYLDKYVVGQSYAKKVLAVAVYNHYKRIY-----------NNI----PAGSRQVEVEK 210

Query: 72  RLA---RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + +   R           T+  E  Y           L+ +A                  
Sbjct: 211 QASLTPRELE--------TRRREDEY-------RFTKLLQIAGISPHG------------ 243

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                  +AL        T++  +++     +     DI++  +     N  + G    G
Sbjct: 244 -------NALGASMQQQATQQAPQERRGGDVLDSTHTDIKLEKS-----NIVLLGPTGSG 291

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------ 242
              L++  +K +       +  ++  C             D+++V    +Q         
Sbjct: 292 KTLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYSVDKA 343

Query: 243 NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SI 291
             GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               +
Sbjct: 344 QQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQV 403

Query: 292 NTDHILFIASGAFH 305
           +T +ILF+ASGAF+
Sbjct: 404 DTTNILFVASGAFN 417


>gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
           [Pediculus humanus corporis]
 gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative
           [Pediculus humanus corporis]
          Length = 589

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 138/375 (36%), Gaps = 69/375 (18%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 255 LDKSNILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 314

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 315 NYSVERAQTGIV-----------FLD-----------------------------EVDKI 334

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      + S +K   E ++         
Sbjct: 335 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTIVNVPEKNSPRKLRGETIQ--------- 381

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G             V   +    Y S
Sbjct: 382 --VDTTNILFVASGAYNGLDHL--ISRRKNEKYLGFGVPATD-SPNRRVASLADQANYNS 436

Query: 291 INTDHILFIASGAF-HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
            N+         A+       DL+     PE  GRFPV V   SLN+     ILT+ ++ 
Sbjct: 437 PNSAEQDNAEKDAYLRQVEARDLIEFGMIPEFVGRFPVLVAFHSLNEDFLVRILTEPKNA 496

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           ++ QY+ L   + + L F+ +++  +A  A+   +     GAR L+ +ME +L D  F  
Sbjct: 497 IVPQYQMLFSMDKVDLTFSPEALRGIARQAMERKT-----GARGLRAIMETLLLDSMFEV 551

Query: 405 SDLQEKTVVIDAEYV 419
                  V ++ E V
Sbjct: 552 PGSDILAVHVNEETV 566



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           I   L+ Y+IGQ+ AK+ +++A+ N ++R    
Sbjct: 144 IYEYLNNYVIGQEHAKKVLSVAVYNHYKRIYNN 176


>gi|167522799|ref|XP_001745737.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776086|gb|EDQ89708.1| predicted protein [Monosiga brevicollis MX1]
          Length = 595

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 164/428 (38%), Gaps = 103/428 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------LMPKNILL 58
            PR+IV+ L+ Y++GQ  AK+ +A+A+ N ++R    A+L++E             NIL+
Sbjct: 211 KPRQIVNTLNEYVVGQSYAKKVLAVAVYNHYKRV--SANLKEESSEVAHDTRFDKSNILM 268

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
            GPTG GKT ++R LA +   P    + T  T+ GYVG +VE ++  L+      V +++
Sbjct: 269 CGPTGSGKTLLARTLAEILDVPIAIADCTSLTQAGYVGEDVESVLYKLLAACNFNVEQAQ 328

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           R  V                                         EID   +     ++ 
Sbjct: 329 RGIV--------------------------------------FLDEIDKIGSPKGGFVAT 350

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            D+ G        + +   K++       +++  +       ++         ++   +I
Sbjct: 351 RDVSG------EGVQQALLKLLEGTI---VQVPDKSASKVRGQE-------SYSIDTSNI 394

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG-------SSVSTKYGSI 291
             + +     L++   I  R +   +G +     +D    V+G       S+   K+G I
Sbjct: 395 LFIGSGAFNGLEKL--ISNRQAKGSLGFN--ATLKDPKAPVDGKLLRSVISTDLVKFGLI 450

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                 F            DL+               L +          + +L+ QYK 
Sbjct: 451 PEFVGRFPCVVHLEALDRNDLI-------------HVLTE---------PKHSLLSQYKG 488

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L + +   L     +++A+AD A+        IGAR L++++E+VL D  F        +
Sbjct: 489 LFRMDNAELVLEPSALEAIADKALERG-----IGARGLRSILEQVLLDAMFDTPGSTHAS 543

Query: 412 VVIDAEYV 419
           V+I+ + V
Sbjct: 544 VIINDKVV 551


>gi|27374282|gb|AAO01037.1| CG4538-PA [Drosophila virilis]
          Length = 689

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 148/388 (38%), Gaps = 69/388 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT I++ +AR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 334 LEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 393

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  ++   V            LD                             +++  
Sbjct: 394 NYSVERAQTGIV-----------FLD-----------------------------EVDKI 413

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I      GG  V       +   + G+      R S +K   E ++         
Sbjct: 414 GAVPGIHQLRDVGGEGVQ----QGMLKMLEGTVVNVPERNSPRKLRGETVQ--------- 460

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             V   +I  V +     LD    I  R +   +G              + ++       
Sbjct: 461 --VDTTNILFVASGAYTGLDRL--IARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 516

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
              D  L        V     ++PE  GRFPV V   SLN +    ILT+  + L+ QYK
Sbjct: 517 EERDKCLTKVQARDLV--EFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYK 574

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM--ERVLEDISFSASDLQ 408
            L+  + + L FTED+++++A +A+  ++     GAR L+++M  E +L D  F      
Sbjct: 575 ALLGLDEVDLSFTEDAVESIATLAMERHT-----GARGLRSIMLQETLLLDPMFIVPGSD 629

Query: 409 EKTVVIDAEYVRLHIGDF---PSETDMY 433
            + V I AEYVR +        S+ D  
Sbjct: 630 IRGVHITAEYVRGNTKPVYIRNSDEDAS 657



 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 25/35 (71%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ+ AK+ +A+A+ N ++R    
Sbjct: 202 QKIMEYLDKHVVGQEFAKKVLAVAVYNHYKRIHHN 236


>gi|50310995|ref|XP_455520.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644656|emb|CAG98228.1| KLLA0F09691p [Kluyveromyces lactis]
          Length = 505

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/469 (21%), Positives = 174/469 (37%), Gaps = 113/469 (24%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
           SP+E+ + LD YI+GQ D K+  ++A+ N + R                           
Sbjct: 32  SPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKLDST 91

Query: 44  --------------------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
                                       D   EL   N+++VGP+G GKT ++  LAR+ 
Sbjct: 92  SPIEFTSTEAEQGMRNLQRQLSLELDNDDEDLELSKSNLMVVGPSGSGKTLLATTLARML 151

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P    + T+ T+ GY+G +VE  I  L+  A   V ++      E+  I  +E  +D 
Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKA------EKGIIVLDE--VDK 203

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L    A+  T++V  +                              G    +L + E   
Sbjct: 204 LAKPAASIGTKDVSGE------------------------------GVQQSLLKILEGHG 233

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE-FDKIV 256
             +   R    +   +       ++E+        V   +I  +     V LD+   K +
Sbjct: 234 VELTLKRPVNKKKDDKNNQTAAKKEETF------VVDTSNILFMLMGAFVGLDKHIVKRI 287

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL---- 312
            R        + +      L     +      G   T         A +   P+DL    
Sbjct: 288 ERIKNPDATANDKESDSKKLR-FSNTIEHIDIGDGKT-------ISALNFVTPSDLVSYG 339

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR P+   L+ L ++D   IL +  + L+ QY+ + K  G+ L  TE ++  +A
Sbjct: 340 IIPELIGRVPIVTALEPLKQTDLFHILKEPRNALLHQYEYIFKQFGVTLGVTEKALKRVA 399

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             A+         GAR L+ +MER+L ++++   D     V+++ E V+
Sbjct: 400 QFALK-----EGTGARGLRGIMERLLLNVNYECPDSGISYVLVNEETVK 443


>gi|301091465|ref|XP_002895917.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Phytophthora infestans T30-4]
 gi|262096081|gb|EEY54133.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Phytophthora infestans T30-4]
          Length = 705

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 107/481 (22%), Positives = 183/481 (38%), Gaps = 100/481 (20%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------QLPADLRDELMPKNILLV 59
           + + R I   L+ Y+IGQ   K+ +A+ + N ++R       Q   +        N    
Sbjct: 231 SLTWRSIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQ 290

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            P   G T   + +      P                  +  I R L+   I    +   
Sbjct: 291 HPRAGGVTR--QHVD--MDDP-----------------RLSNIGRRLLLEEIYSGSDKND 329

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
            E+   +  +A E         T T+ T      +L+   + DK   +E      D +N 
Sbjct: 330 AEMPPTSKQHASE----ETAEVTKTTETTHTHATRLQHHSMGDKLQYLE--GVELDKTNV 383

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDMDTVHRDS 237
            + G    G   L++  +++            + +        ES   +L      + ++
Sbjct: 384 MLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEA 443

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--------- 286
            Q     GIV++DE DKI  +     I   VS EGVQ+ LL ++EGS V+          
Sbjct: 444 TQR----GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNP 499

Query: 287 --KYGSINTDHILFIASGAF-------------------------------------HVS 307
             ++ +I+T +ILFI  GAF                                       +
Sbjct: 500 RGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQA 559

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P DL     +PE  GRFP+ V    L+K +   +L + +++L+ QYK L     +    
Sbjct: 560 EPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLNEPKNSLVRQYKALFALSDVEFHA 619

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
           TE +++A+A+ A+  N+     GAR L+++ ER L +  F   D+ +   V +D E +  
Sbjct: 620 TEGALEAVAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILG 674

Query: 422 H 422
           H
Sbjct: 675 H 675


>gi|324510952|gb|ADY44570.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
           [Ascaris suum]
          Length = 528

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 182/483 (37%), Gaps = 137/483 (28%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD+++IGQ+ AK+ +A+ +   ++R +            N  +   T   +  
Sbjct: 83  PKEITAYLDQFVIGQEHAKKTLAVGVYQHYKRLEH-----------NSRIAAQT--QRKK 129

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + +    +          +   +  Y     E ++         I+++  R +V      
Sbjct: 130 LHQHADEIF--------ASSLDQSTY-----EALMLK------GIIKKKERTKV------ 164

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                              R  F  K    +        E      + SN  + G + VG
Sbjct: 165 --------------IHCKQRTKFNPKELQLKAH-----AEAGSFPLEKSNIILLGPSGVG 205

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------ 242
              L+++ + V+         + +  C   ++        D+DTV +  +Q  +      
Sbjct: 206 KTYLTQMLANVLD--------VPIAMCDCTVLTQAGYVGDDVDTVIQKLLQNADGDIERT 257

Query: 243 NYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-------IN 292
             GIVFLDEFDKI +     S     VS  GVQ+ LL LVEG+ +  K          ++
Sbjct: 258 QRGIVFLDEFDKISSSTDFHSHGFRDVSGRGVQQALLKLVEGTVIKVKGPPSLGTKVDVD 317

Query: 293 TDHILFIASGAFH------------------------------------VSRPAD----- 311
           T ++LF+ASGAF+                                    VS+  D     
Sbjct: 318 TSNVLFVASGAFNNLDKIIARRLHRKIVGFGADINTEYAECLQNKDEKKVSKCRDQLLAQ 377

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     ++PE+ GRFPV V    L++     I+ +  +++I Q K+    + + L 
Sbjct: 378 TDQTDLISFGMVPELIGRFPVYVPFHGLDEELLVRIMQEPRNSIISQAKQQFLLDKVRLH 437

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT+ ++  +A +AV   +     GAR L+ ++E VL D  +        TV+ID   V+ 
Sbjct: 438 FTDGALKEIARIAVQKKT-----GARALRMIVENVLLDAKYEVPGTGVDTVIIDENVVKG 492

Query: 422 HIG 424
              
Sbjct: 493 KTS 495


>gi|171913851|ref|ZP_02929321.1| ATPase AAA-2 domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 542

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 174/433 (40%), Gaps = 90/433 (20%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW---------RRQQLPADLRDELMP 53
           L F + P +I + LDR++I Q DAK+ +A A+ + +         RR+   A    E   
Sbjct: 67  LDFRYRPADIKAYLDRFVIRQDDAKKVLATAVCDHYNHARMLREMRRRDPKAADEVEFAK 126

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +N+++VGPTGVGKT + + +A L G PF+K + TKF+E GYVG +V+ ++RDLV  A   
Sbjct: 127 QNVIIVGPTGVGKTYLVKHIADLIGVPFVKADATKFSETGYVGADVDDLVRDLVTKANGN 186

Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +    +     ++  +++  A        N R V    L+  E      + EV+  +
Sbjct: 187 IDLAEHGIIY----LDEVDKLATAGDRPGRDVNGRGVQTTLLKLME------ETEVSLHA 236

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +               ++      +    +    R  V                    V
Sbjct: 237 PN---------------DMRSQIQMMFEMRKGDAPRRQV--------------------V 261

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           +  ++  V +     L++   I  R S   IG               G++V         
Sbjct: 262 NTRNVLFVVSGAFSGLEKI--IERRVSKGSIGF--------------GAAVREDV----- 300

Query: 294 DHILFIASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                I+     ++R  D +      E  GR PVRV   SL   D   I+  +E +LI Q
Sbjct: 301 -----ISGTPLRLARTQDFIDYGFEAEFIGRLPVRVVCDSLTADDLFDIMKSSEGSLIRQ 355

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           ++   +  GI   F + ++   A  A    +     GAR L TV E+ L D  F    L 
Sbjct: 356 FEREFQAYGIHATFDDSALRVKARQAAEEKT-----GARGLMTVWEKSLRDFKFELPSLG 410

Query: 409 EKTVVIDAEYVRL 421
            K +++D   +R 
Sbjct: 411 LKELLVDETLLRD 423


>gi|332140446|ref|YP_004426184.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550468|gb|AEA97186.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 346

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 74/351 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  KPTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNGDVHEGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 228

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +   Q+                  V    I  +     
Sbjct: 229 ---------------------RKHPQQEFL---------------QVDTSKILFICGGAF 252

Query: 247 VFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             LD+  ++   +D+G G G + +              +S  +  +  + ++        
Sbjct: 253 AGLDKVIEQRAQKDTGIGFGATVKSKDNSKQ-------ISELFKQVEPEDLV-------- 297

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                 L+PE  GR PV   L+ LN+     IL + ++ +  QY  L   E
Sbjct: 298 ---KYGLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSME 345


>gi|309807632|ref|ZP_07701576.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a]
 gi|308169129|gb|EFO71203.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a]
          Length = 173

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/168 (52%), Positives = 124/168 (73%)

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
           A D      VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF  S+P+DL+PE+
Sbjct: 2   AGDKNTTGQVSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPEL 61

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
           QGRFP+RV L  L +SDF  IL D++++L+ QY+ L+KT+GI L FT+++I  LA +A +
Sbjct: 62  QGRFPIRVELNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYD 121

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +N    ++GARRL T++E++LEDI F   D+ E  + +  +YV   +G
Sbjct: 122 VNQGTDNVGARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLG 169


>gi|258571573|ref|XP_002544590.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus
           reesii 1704]
 gi|237904860|gb|EEP79261.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus
           reesii 1704]
          Length = 524

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 101/494 (20%), Positives = 170/494 (34%), Gaps = 112/494 (22%)

Query: 12  IVSELDRYIIGQQDAKRA--VAI----------------------------ALRNRWRRQ 41
           +   LD++++GQ  +K+   VA+                            A+       
Sbjct: 2   LKQHLDQFVVGQDRSKKVLSVAVYNHYQRVQELQRRAEEEEAYLARQARREAVEGHPLEA 61

Query: 42  QLPADLRDE---------------------------LMPKNILLVGPTGVGKTAISRRLA 74
           + P   R                             L   N+LL+GP+GVGKT +++ LA
Sbjct: 62  EFPGQQRTVSSRSHEEFNDDFTRSGPDHLVDMSPLTLEKSNVLLLGPSGVGKTLMAKTLA 121

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
           R+   PF   + T FT+ GY+G + +  ++ L+  A   V ++ R  +     ++  ++I
Sbjct: 122 RVLSVPFSMSDCTPFTQAGYIGEDADVCVQRLLAAANYDVAQAERGII----CLDEVDKI 177

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
             A V      +   V +  L+  E +  +I  +    +            S    +   
Sbjct: 178 ATAKVSHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNAPRQGGSSNNFPGSGLGGSSFS 237

Query: 195 LFSKVMGSG------RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
             S            R   I       +  L +      + MD + R SI   +      
Sbjct: 238 SSSPGSPGKSEVYNVRTDNILFIFSGAFVGLQK------VIMDRISRGSIGFGQP----- 286

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
                 + A  +      S    Q   +P+  GS     Y         F  S   +VS 
Sbjct: 287 ------VRASANPFSSHDSSHASQNAPIPIRPGSEEEALY---KKHLPFFTPSPTPNVSS 337

Query: 309 PAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
           P +                     +PE+ GR P+   L  L+KS    ILT+  ++L+ Q
Sbjct: 338 PDEGPQYFNPLDLLTPPDLQSYGFIPELVGRIPITTALSPLSKSLLLRILTEPRNSLVNQ 397

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  L    GI L FT  ++  +A  A  +++     GAR L+T ME +L D  F A    
Sbjct: 398 YTALFALSGIELCFTTSALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSS 452

Query: 409 EKTVVIDAEYVRLH 422
            K V++        
Sbjct: 453 VKFVLVTEAVADRK 466


>gi|113931262|ref|NP_001039078.1| ClpX caseinolytic peptidase X homolog [Xenopus (Silurana)
           tropicalis]
 gi|89273895|emb|CAJ83484.1| ClpX caseinolytic protease X homolog [Xenopus (Silurana)
           tropicalis]
          Length = 377

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 140/379 (36%), Gaps = 72/379 (18%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 28  LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 87

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V                                      +K + G +   E+D   +
Sbjct: 88  NYNV--------------------------------------EKAQQGIVFLDEVDKIGS 109

Query: 171 DTSSDISNFDIPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                        G   G+L L E     V     +K    +VQ                
Sbjct: 110 VPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ---------------- 153

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS-----REGVQRDLLPLVEGSSV 284
              V   +I  V +     LD    I  R +   +G        +G +      +  +S 
Sbjct: 154 ---VDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGIASNLGKGRRAAAAADLANASS 208

Query: 285 STKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
            +     I     L     A  +     ++PE  GR PV V L SL++     ILT+  +
Sbjct: 209 ESNVVQDIEEKDRLLRLVEARDLIE-FGMIPEFVGRLPVVVPLHSLDEQTLVRILTEPRN 267

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            ++ QY+ L   +   L   ED++ A+A +A+   +     GAR L+++ME++L +  F 
Sbjct: 268 AVVPQYQALFSMDKCELSINEDALRAIARLALERKT-----GARGLRSIMEKLLLEPMFE 322

Query: 404 ASDLQEKTVVIDAEYVRLH 422
             +     V +D E V   
Sbjct: 323 VPNSDIVCVEVDQEVVEGK 341


>gi|289548352|ref|YP_003473340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermocrinis
           albus DSM 14484]
 gi|289181969|gb|ADC89213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermocrinis
           albus DSM 14484]
          Length = 412

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 150/384 (39%), Gaps = 85/384 (22%)

Query: 108 DVAINIVRESRRDEVREQASIN-AEERILDALVGKTATSNTREVF--------RKKLRDG 158
           +    IVRE +R     +       E+I + L          +           K++R  
Sbjct: 38  EKCYAIVREHKRSNTEFKLEDLPTPEKIKEILDQYVIGQEKAKKILSVAVYNHYKRIRAK 97

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E+     D+EV  +     N  + G    G   L+   +K++          S+ +    
Sbjct: 98  EMGLDLNDVEVEKS-----NILLIGPTGSGKTLLARTLAKILDVPFAIADATSLTEA--- 149

Query: 219 LMRDESDRLIDMDTVHRDSIQ------MVENYGIVFLDEFDKIVARDSGN---GIGVSRE 269
                     D++ V    +Q           GIV++DE DKI  +   N      VS E
Sbjct: 150 -----GYVGEDVENVLTRLLQNCGYDVKAAQKGIVYIDEIDKIARKSGINPSITRDVSGE 204

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------- 304
           GVQ+ LL ++EG+  +            ++  ++T  ILFI  GAF              
Sbjct: 205 GVQQALLKILEGTVANVPPQGGRKHPHQEFIQVDTTDILFICGGAFVGLEDIIKRRLGKS 264

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                             H+  P DL+     PE  GR PV   L  L + D   IL + 
Sbjct: 265 TVGFEASIKKAHYEGNVLHLVEPDDLIHFGMIPEFIGRLPVIAVLDELTEEDLVRILVEP 324

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY++L+  EG+ L FTE+++  +A  A+   +     GAR L+ +ME ++ D+ 
Sbjct: 325 KNALVKQYQKLLAMEGVELVFTEEALREIAAEAIRRKT-----GARGLRAIMEEIMTDVM 379

Query: 402 FSASDLQE-KTVVIDAEYVRLHIG 424
           F    L+  K VV+D   VR  + 
Sbjct: 380 FEVPSLKGVKKVVVDGRTVRERVK 403



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 4/125 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRD-ELMPKNIL 57
           KL    +P +I   LD+Y+IGQ+ AK+ +++A+ N ++R +      DL D E+   NIL
Sbjct: 55  KLEDLPTPEKIKEILDQYVIGQEKAKKILSVAVYNHYKRIRAKEMGLDLNDVEVEKSNIL 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++R LA++   PF   + T  TE GYVG +VE ++  L+      V+ +
Sbjct: 115 LIGPTGSGKTLLARTLAKILDVPFAIADATSLTEAGYVGEDVENVLTRLLQNCGYDVKAA 174

Query: 118 RRDEV 122
           ++  V
Sbjct: 175 QKGIV 179


>gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 405

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 127/311 (40%), Gaps = 57/311 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            IE  DT    SN  + G    G   L++  ++ +          ++ +    +  D  +
Sbjct: 94  HIEDDDTEISKSNILLIGPTGSGKTLLAQSIARFLDVPIAIADATNLTEAG-YVGEDVEN 152

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +   E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 153 ILTKLLMAADGDVDKAEK-GIVFIDEIDKIARLGENRSITRDVSGEGVQQALLKIIEGSV 211

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILFI  GAF                            
Sbjct: 212 VNIPPKGGRKHPNQDFIQIDTSNILFICGGAFDGLNEMIKRRLGGNIMGFGQKQHSKNEE 271

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE+ GR  V   L  +   D   ILT+ ++ L+ QY++L + 
Sbjct: 272 ENLLRFVEPDDLVNYGLIPELIGRLHVIATLNPITVEDMVRILTEPKNALVKQYQKLFEL 331

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G+ L F  ++++ +A  A+   +     GAR L++++E +L DI +   +L+   VVI 
Sbjct: 332 DGVQLTFQPEALEKIAQKAIERKT-----GARGLRSILEEILLDIMYELPELEGYEVVIT 386

Query: 416 AEYVRLHIGDF 426
            + V       
Sbjct: 387 PDVVEKKAQPL 397



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 10/231 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65
            +P+E+   LD Y+IGQ++AK+ +++A+ N ++R  +   D   E+   NILL+GPTG G
Sbjct: 57  LTPKELKHFLDEYVIGQEEAKKTLSVAVYNHYKRLFKHIEDDDTEISKSNILLIGPTGSG 116

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +AR    P    + T  TE GYVG +VE I+  L+  A   V ++ +     D
Sbjct: 117 KTLLAQSIARFLDVPIAIADATNLTEAGYVGEDVENILTKLLMAADGDVDKAEKGIVFID 176

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A +     I   + G+       ++    + +                 D SN  
Sbjct: 177 EIDKIARLGENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDTSNIL 236

Query: 181 IPGGASVGILNLSELFSKVMGSGRK--KKIRMSVQKCYPELMRDESDRLID 229
              G +     L+E+  + +G       + + S  +    L   E D L++
Sbjct: 237 FICGGAFD--GLNEMIKRRLGGNIMGFGQKQHSKNEEENLLRFVEPDDLVN 285


>gi|171690260|ref|XP_001910055.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945078|emb|CAP71189.1| unnamed protein product [Podospora anserina S mat+]
          Length = 599

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 153/398 (38%), Gaps = 63/398 (15%)

Query: 36  NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           N + ++ L      ++   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+
Sbjct: 202 NFYIQEDLTVPNHVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYI 261

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG--KTATSNTREVFRK 153
           G++VE  I  L+  A   V+ +    +           +LD      +  T N R+V  +
Sbjct: 262 GQDVESCIERLLIEANYDVKAAEHGII-----------VLDEFDKIARKETVNGRDVGGE 310

Query: 154 KLRDGEISDKE---IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
            ++   +   E   + I V D     +    P G             +   SG+      
Sbjct: 311 GVQQALLKLVEGTKVTITVKDNRPSRTQNQPPTGYGSTTPP------QAPPSGK------ 358

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE- 269
                            +D  T+   +I  V     V LD+   ++ R S   IG   E 
Sbjct: 359 -----------------VDQYTIDTTNILFVFCGAFVGLDK--TVLRRVSKPSIGFGSEI 399

Query: 270 --GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPV 322
             G        ++       Y  +    I         ++ PADL     +PE+ GR   
Sbjct: 400 RGGRSFSSTNSLKDILPLESYRHLPHQPIFEPNFTPLDLTTPADLQAFGFIPELIGRLHN 459

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
              L  L+  +   ILT+  ++L+ QY  L +T    L FT  ++ A+A+ A    +   
Sbjct: 460 ICALSPLSLEELYRILTEPRNSLVAQYTALFETYPSKLFFTRSALYAIAERAAKNET--- 516

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             GAR L+  MERVL +  + A       V+I    V+
Sbjct: 517 --GARGLKMEMERVLAEPMYDAP---TPYVLITEACVK 549


>gi|153824131|ref|ZP_01976798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|126518350|gb|EAZ75573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
          Length = 339

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 129/345 (37%), Gaps = 75/345 (21%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PR+I   LD Y+IGQ+ AK+ +A+A+ N ++R +      +  EL   NILL+GPTG G
Sbjct: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V ++ R  V   
Sbjct: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVY-- 184

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +  K I+  VA               
Sbjct: 185 -----IDEIDKISRKSENPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG-------- 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                                  +   Q+                  V    I  +    
Sbjct: 230 ----------------------RKHPQQEFL---------------QVDTSKILFICGGA 252

Query: 246 IVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
              LD+  ++ VA  +G G G                           T   LF      
Sbjct: 253 FAGLDKVIEQRVATGTGIGFGADVRSKDNS-----------------KTLSELFTQVEPE 295

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            + +   L+PE  GR PV   L  L+++    IL + ++ L  QY
Sbjct: 296 DLVK-YGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQY 339


>gi|296284616|ref|ZP_06862614.1| ATP-dependent protease ATP-binding subunit ClpX [Citromicrobium
           bathyomarinum JL354]
          Length = 421

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 140/327 (42%), Gaps = 65/327 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  + + K+ D+E+A +     N  + G    G   L++  ++            ++
Sbjct: 91  NHYKRLKHAGKQGDVELAKS-----NILLVGPTGSGKTLLAQTLARTFDVPFTMADATTL 145

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  + +GIV++DE DKI  +     I   VS EG
Sbjct: 146 TEAG-YVGEDVENIILKLLQASDYNVEKAQ-HGIVYIDEIDKITRKAENPSITRDVSGEG 203

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL L+EG++ S            ++  ++T +ILFI  GAF               
Sbjct: 204 VQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIGDRLQKRS 263

Query: 305 -----HVSRPA-------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                HV+ P                     L+PE  GR PV   L  L+      IL +
Sbjct: 264 IGFGAHVADPDKRRIGELLEKSEPEDLLKFGLIPEFVGRLPVIASLHDLDVDALVTILQE 323

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ ++ QY +L + EG+ L F +D++ A+A+ A+   +     GAR L++++E +L D 
Sbjct: 324 PKNAIVKQYAKLFELEGVELTFNDDALRAIAERAIKRKT-----GARGLRSIVEGLLLDT 378

Query: 401 SFSASDLQE-KTVVIDAEYVRLHIGDF 426
            +   DL+    VVID + V       
Sbjct: 379 MYDLPDLEGCNEVVIDKDVVEGRKEPI 405



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI + L+ Y+IGQ+ AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 63  TPSEICATLNDYVIGQERAKRVLSVAVHNHYKRLKHAGKQGDVELAKSNILLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++   V    
Sbjct: 123 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQHGIVYIDE 182

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ +  AE   I   + G+       ++                 +      D +N   
Sbjct: 183 IDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 242

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+  + +   K              ++    L + E + L+
Sbjct: 243 ICGGAFAGLDKIIGDRLQKRSIGFGAHVADPDKRRIGELLEKSEPEDLL 291


>gi|291532658|emb|CBL05771.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas
           hypermegale ART12/1]
          Length = 330

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/402 (21%), Positives = 152/402 (37%), Gaps = 96/402 (23%)

Query: 35  RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
               +R          +   N++++GP+G GKTA+ + L++L   PF   + +  TE G+
Sbjct: 5   YTHDKRDMN-------IEKSNVIMLGPSGCGKTAMLQHLSKLLDIPFAVTDASSLTEAGF 57

Query: 95  VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
           VG +VE  +R+L   A   +               AE  I+                   
Sbjct: 58  VGSDVEVAVRNLYYAADKNI-------------EKAEHGII------------------- 85

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
                    E D     + ++ S    PG   V    L  +   V+    + + +    +
Sbjct: 86  ------YLDEFDKIARKSGANNSITADPGHEGVQQGLLKMMEGGVVEFTAQGQRKHP--E 137

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR--DSGNGIGVSREGVQ 272
                             V   +I  +     V ++E   I  R     +GIG       
Sbjct: 138 APTI-------------KVDTTNILFIVGGAFVGIEEI--IAKRLKTDNSGIGF------ 176

Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLK 327
                   G++V TK      D  +F  +   H  RP DL     +PEI GR PV   L+
Sbjct: 177 --------GANVKTKN-----DKPVF--NDLIHKVRPEDLIKFGIIPEIIGRLPVICTLE 221

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + D   ILT+ ++  + QY+EL+  + + L+F  D++ A+A  A+   +     GAR
Sbjct: 222 ELTEDDLLKILTEPKNAPVRQYQELLAMDKVKLEFEHDALLAVAKKAIERKT-----GAR 276

Query: 388 RLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPS 428
            L+ ++E V+ DI +      + + V+I  + +  H      
Sbjct: 277 SLRGILEDVMLDIMYEIPQSDEPRKVIITKDCIENHTQPKIE 318


>gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
 gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia
           alexandrii DFL-11]
          Length = 421

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 71/373 (19%)

Query: 107 VDVAINIVRESRRDE-VREQASINAEERILDALV-----GKTATSNTREVFRKKLRDGEI 160
           V++ ++I+RE  +   V+ +  I   + I D L        +A            +    
Sbjct: 41  VELCMDIIREENKSSLVKSRDGIPTPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNH 100

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           + K  D+E+A +     N  + G    G   L++  ++++          ++ +    + 
Sbjct: 101 ASKNNDVELAKS-----NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-YVG 154

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 155 EDVENIILKLLQSADYNVERAQ-RGIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKI 213

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF--------------------HVS 307
           +EG+  S            ++  ++T ++LFI  GAF                     V 
Sbjct: 214 MEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLDKIISDRGTQTSIGFQAQVH 273

Query: 308 RPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
            P D                   L+PE  GR PV   L+ L++     ILT+ ++ L+ Q
Sbjct: 274 APEDRRIGELFSELEPEDLLKFGLIPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQ 333

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L + E + L F E+++ A+A+ A+   +     GAR L++++E +L D  +    L+
Sbjct: 334 YQRLFEMEQVELSFHEEALRAIANRAIERKT-----GARGLRSILESILLDTMYELPGLK 388

Query: 409 E-KTVVIDAEYVR 420
             K VVI  E V+
Sbjct: 389 GVKEVVISPEVVK 401



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 184

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  A+   I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNMLF 244

Query: 182 PGGASVGILN 191
             G +   L+
Sbjct: 245 ICGGAFAGLD 254


>gi|207109295|ref|ZP_03243457.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 191

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/190 (46%), Positives = 133/190 (70%), Gaps = 1/190 (0%)

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGV 271
           ++    L  + SD L+D + +  + ++  E+ G++F+DE DKI  +         S+EGV
Sbjct: 1   KEAKEALKAEISDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKESGRQDPSKEGV 60

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
           QRDLLP+VEGS V+TKYGSI T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L +
Sbjct: 61  QRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTE 120

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
               +ILT T++++I QY+ L+K EG+ + F + +I  LA ++ N N    DIGARRL T
Sbjct: 121 EIMYMILTQTKNSIIKQYQALLKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHT 180

Query: 392 VMERVLEDIS 401
            +E+VL+ + 
Sbjct: 181 TIEKVLKKLL 190


>gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1]
 gi|123162493|sp|Q11J59|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans
           sp. BNC1]
          Length = 424

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLIGPTGCGKTLLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPAD------------ 311
              ++  ++T  ILFI  GAF                     VS P D            
Sbjct: 232 PQQEFLQVDTSSILFICGGAFAGLEKIISDRGKKTSIGFGASVSSPEDRRAGELLRQVEP 291

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+   L+ L++     ILT+ ++ L+ QY+ L + E + L F E
Sbjct: 292 EDLLKFGLIPEFVGRLPILATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHE 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++ A+A  A+   +     GAR L+++ME +L D  F    L+  + VVI  + V
Sbjct: 352 NALRAIARKAIERKT-----GARGLRSIMEAILLDTMFELPALEGVQEVVISEDVV 402



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 67  TPQEIMEVLDDYVIGQTYAKRVLSVAVHNHYKRLAHAGKNADVELSKSNILLIGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D S+   
Sbjct: 187 IDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTSSILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSV-QKCYPELMRDESDRLI 228
           I GGA  G+  +     K    G    +     ++    L + E + L+
Sbjct: 247 ICGGAFAGLEKIISDRGKKTSIGFGASVSSPEDRRAGELLRQVEPEDLL 295


>gi|322707680|gb|EFY99258.1| putative MCX1 protein [Metarhizium anisopliae ARSEF 23]
          Length = 523

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 168/441 (38%), Gaps = 68/441 (15%)

Query: 6   NFSPREIVSELDR-------YII----GQQDAKRAVAIA-------LRNRWRRQQLPADL 47
            F PR++   +D        +++    G  ++ R +  A       L + +  +   A  
Sbjct: 78  QFYPRDLKRRVDENPKINNTFLVDEFPGHNESVRQLHDATEFEEDPLDHLYVPEDPSAPE 137

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             ++   N+LL+GPTGVGKT I   L++    PF   +    T+ GY+G++VE  I  L+
Sbjct: 138 HVKIDKSNLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLL 197

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
             A   ++ +    V     ++  +++               V +  L+  E +   I++
Sbjct: 198 IEANYDIKATEYGIV----VLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINV 253

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +   +S           +     +  +                                 
Sbjct: 254 KDNRSSRSTPPITTNYSSGGSSSSAPQAVPPGGK-------------------------- 287

Query: 228 IDMDTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +D  T+   +I  V     V LD+    ++     G G  +           ++  S   
Sbjct: 288 VDQYTIDTSNILFVFCGAFVGLDKAVLQRVAKPSMGFGGELRGRSTLSGSKHILPLSV-- 345

Query: 286 TKYGSI-NTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILT 339
             Y  I + D +   +     ++ PADL     +PE+ GR      L  L+ SD   +LT
Sbjct: 346 --YAHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNICALSPLSTSDLLRVLT 403

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  ++L+ QY  L +T    L FTE ++ A+A+ A  + +     GAR L+  MER+L +
Sbjct: 404 EPRNSLVAQYTALFETYPSRLRFTEKALYAIAERAAAIGT-----GARGLKMEMERILAE 458

Query: 400 ISFSASDLQEKTVVIDAEYVR 420
             F A       V+I  + V+
Sbjct: 459 PMFDAP---MPYVLITEDCVK 476


>gi|294011931|ref|YP_003545391.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
 gi|292675261|dbj|BAI96779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium
           japonicum UT26S]
          Length = 422

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K            ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVEKAQ-RGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPAD------------ 311
              ++  ++T +ILFI  GAF                    HV+ P +            
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEP 290

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+ +    IL + ++ L+ QY +L   E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLEDLDVAALVKILVEPKNALVKQYAKLFDMENVELSFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           D++ A+A  A+   +     GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 351 DALTAIAKKAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        + EL   NILLVGPTG GK
Sbjct: 66  TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEVELAKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++R  V    
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQRGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +                  +K    L + E + L+
Sbjct: 246 ICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLL 294


>gi|307293096|ref|ZP_07572942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
 gi|306881162|gb|EFN12378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium
           chlorophenolicum L-1]
          Length = 422

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K            ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGCGKTLLAQTLAKTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVEKAQ-RGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPAD------------ 311
              ++  ++T +ILFI  GAF                    HV+ P +            
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEP 290

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+ +    IL + ++ L+ QY +L   E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLEDLDVTALVKILVEPKNALVKQYAKLFDMENVELSFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           D++ A+A  A+   +     GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 351 DALTAIAKKAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AKR +++A+ N ++R        + EL   NILLVGPTG GK
Sbjct: 66  TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEVELAKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++R  V    
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQRGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +                  +K    L + E + L+
Sbjct: 246 ICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLL 294


>gi|302697103|ref|XP_003038230.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8]
 gi|300111927|gb|EFJ03328.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8]
          Length = 450

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 161/464 (34%), Gaps = 104/464 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELM------------ 52
           +   LD++IIGQ++AK+ +++ + N + R Q          D R E              
Sbjct: 1   LTHYLDQFIIGQENAKKVLSVGVFNHYNRVQANASYREAQEDARREYEESARTIYDHEPP 60

Query: 53  -----------------------------------PKNILLVGPTGVGKTAISRRLARLA 77
                                                N+L++GPTG GKTA+++ LAR  
Sbjct: 61  SAPPGVSSANVQPMRRSKPPHLTLHADAIPYPYYEKSNVLMIGPTGSGKTALAKTLARTL 120

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASINAEERILD 136
             PF   + T FT+ GYVG +VE  I  L+  A      + +  V  ++    A +    
Sbjct: 121 DVPFAVSDATAFTQAGYVGEDVEMAIHRLLQAANWNPERAEQGIVFIDEIDKIARK---- 176

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
              G   T +TR+V  + ++   +   E  I        + +                  
Sbjct: 177 --SGSGGTDSTRDVGGEGVQQALLRMLEGSIVTVQAKGAVQSDYSSSSTG---------- 224

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
                       + S +     L   ++D       +   +I  + +     LD+   I 
Sbjct: 225 ------------KDSAEGARGRLSAAKNDIF----QIDTSNILFIMSGAFEGLDKV--IE 266

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
            R +   IG +          L   S  +  + S N+ +IL              L+PE 
Sbjct: 267 KRIAKGSIGFTA--------TLTRESKNNWPFFSPNSQNILEQVE--ISDLLAYGLIPEF 316

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
             R P    L  L   D R ILT+ + +L+ QY  L     + + FT D+IDA+   A  
Sbjct: 317 VNRLPSITALAPLTIPDLRRILTEVKGSLLSQYTSLFGYWSVEIRFTGDAIDAICRRAYE 376

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
                  +     + +ME VL +  +         V+I    V+
Sbjct: 377 RGGGARGL-----RGIMESVLLEPMYEVPGSDVAFVLITEGKVK 415


>gi|218781695|ref|YP_002433013.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763079|gb|ACL05545.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 166/430 (38%), Gaps = 87/430 (20%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------LMPKN 55
           KL FN  P E++S LD+YI+ Q  AK  ++  +   + R +   +   +       +  N
Sbjct: 55  KLNFNLKPEELISYLDQYIVKQDRAKAVLSTKICTHYNRVRRAMESDKKGPDLIGSIKNN 114

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +LL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV  A + V 
Sbjct: 115 VLLLGPTGVGKTYLIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADDDVE 174

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            ++   +     I+  ++I  A     A  +   V R  L+  E  + E++++V      
Sbjct: 175 LAQYGIIY----IDEIDKIAAAHNMMGADVSRTGVQRALLKPME--ETEVELKVPHDPVS 228

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                                   M    ++  R   +                   ++ 
Sbjct: 229 ------------------------MIQELERFRRTGQRDA---------------SRINT 249

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
            +I  + +     L E   I  R +  G+G S +   +                      
Sbjct: 250 KNILFIMSGAFGDLGEI--IKKRMNEKGMGFSAKISSQKE-------------------- 287

Query: 296 ILFIASGAFHVSRPADLLP-----EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                       +  DL+      E  GR PV   L++L   D   IL +  + LI+  K
Sbjct: 288 ----DFKYLRHVKSEDLIKYGFESEFVGRLPVITVLETLAAEDLYTILRNPNNPLIIGKK 343

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
                 GI + FT++++ ALA  A    +     GAR L + +E  L            K
Sbjct: 344 LDFGAYGIDIRFTDNALKALAQKAYEQRT-----GARGLVSAIENALLVFEKRLPSTDIK 398

Query: 411 TVVIDAEYVR 420
              +  E VR
Sbjct: 399 EFSVTEEVVR 408


>gi|270620050|ref|ZP_06221854.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270317774|gb|EFA29150.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 188

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 93/189 (49%), Positives = 129/189 (68%), Gaps = 1/189 (0%)

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             P G       L  LF   +GS + KK +M ++     L+ DE+ +LI+ + + + +I 
Sbjct: 1   MAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQKAID 59

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            VE  GIVF+DE DKI  +   +G  VSREGVQRDLLPLVEGS+VSTK+G + TDHILFI
Sbjct: 60  AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 119

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
           ASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF  ILT+  ++L  QYK LM TEG+ 
Sbjct: 120 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN 179

Query: 360 LDFTEDSID 368
           ++FT +++ 
Sbjct: 180 IEFTTEAVK 188


>gi|57168395|ref|ZP_00367529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           coli RM2228]
 gi|305432811|ref|ZP_07401969.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli
           JV20]
 gi|57020203|gb|EAL56877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           coli RM2228]
 gi|304443965|gb|EFM36620.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli
           JV20]
          Length = 407

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 138/331 (41%), Gaps = 62/331 (18%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   E+ D ++++         SN  + G    G   L++  +K +          
Sbjct: 91  HYKRLFKSELQDDDVELFK-------SNILLIGPTGSGKTLLAQTLAKFLDVPIAICDAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L  +       ++  +  GIVF+DE DKI        I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILTRLLQAADGDVERAQK-GIVFIDEIDKIARMSENRSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EGS V+             +  I+T +ILF+  GAF             
Sbjct: 202 EGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQIDTSNILFVCGGAFDGLETILKRKLGD 261

Query: 305 -----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                P DL     +PE+ GR  V   L  LN+ D   ILT+ +
Sbjct: 262 KVVGFFDNEKENSKALLEKIEPDDLVHFGLIPELIGRLHVITSLNELNEDDMVRILTEPK 321

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + ++ QY++L   +G+ L F +D++  +A +A+   +     GAR L++++E ++ D+ F
Sbjct: 322 NAIVKQYQKLFAIDGVNLKFEDDALREIAKLALERKT-----GARGLRSIIEEIMVDLMF 376

Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
              + +   +VI  E VR        +  + 
Sbjct: 377 ELPEYKNYDIVITKEVVRDGAKALLIKKKIS 407



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 9/231 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILL+GPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKSELQDDDVELFKSNILLIGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V  +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVERAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                G +   L    +  + +G           +     L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET--ILKRKLGDKVVGFFDNEKENSKALLEKIEPDDLVH 288


>gi|332978058|gb|EGK14796.1| ATP-dependent Clp protease ATP-binding subunit [Desmospora sp.
           8437]
          Length = 423

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 142/345 (41%), Gaps = 66/345 (19%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +  + A  +         +    S K  D+E+  +     N  + G    G   
Sbjct: 73  ILDEYVIGQEQAKKSLSVAVYNHYKRINSSHKSDDVELQKS-----NIIMIGPTGSGKTL 127

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 128 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 185

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 186 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTGNILF 245

Query: 299 IASGAFHVSRP--------------------------------------ADLLPEIQGRF 320
           +  GAF    P                                        L+PE  GR 
Sbjct: 246 VCGGAFDGLEPIIKRRIGKKVIGFGADSNTDDLKQGEYLKMVLPEDLLRFGLIPEFVGRL 305

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L++     ILT+ ++ L+ QY++L++ + + L F ED++ A+AD A+  N+ 
Sbjct: 306 PVISTLEPLDQDALVRILTEPKNALVKQYQKLLEMDDVKLTFEEDALKAIADEAIRRNT- 364

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
               GAR L+ ++E ++ D+ F      +    V+    VR  + 
Sbjct: 365 ----GARGLRAIIESIMLDVMFDLPSRDDVSECVVTEATVRNKVA 405



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI + LD Y+IGQ+ AK+++++A+ N ++R        D EL   NI+++GPTG GK
Sbjct: 66  KPQEINAILDEYVIGQEQAKKSLSVAVYNHYKRINSSHKSDDVELQKSNIIMIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 126 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D  N   
Sbjct: 186 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTGNILF 245

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 246 VCGGAFDGLE 255


>gi|145608352|ref|XP_360644.2| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15]
 gi|145015830|gb|EDK00320.1| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15]
          Length = 574

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 115/514 (22%), Positives = 178/514 (34%), Gaps = 159/514 (30%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F PR++   LD +++GQ+ AK+     + N ++ Q+   ++ DE   +   L+      
Sbjct: 72  QFYPRDLKRRLDEFVVGQERAKKTTTSVVFNHYQGQRRRQNIEDERRVEEERLLRQQHFQ 131

Query: 66  KTAISRRLARLAGAPFIKVEVTKFT-----EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +       A   G P  K+E          E  + G +  +  + L +   + V E  RD
Sbjct: 132 RARREPHPAEGQGHPESKLERKPNADNLGFEDDFPGHH--ESAQGLHEQDPSFVEEFLRD 189

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           + R+   +  ++  L  +                            + V  T SD ++F 
Sbjct: 190 DARDSRHVTIQKSNLLCIGPTGVGKTY---------------IVEHLNVPFTISDCNSFT 234

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
             G                        I   V+ C   L+ +      D D      +  
Sbjct: 235 QAG-----------------------YIGQDVEACIERLLIEA-----DYD------VNA 260

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST-------------- 286
            EN GIV LDEFDK+  R+S NG  V  EGVQ+ LL LVEGS V+               
Sbjct: 261 AEN-GIVVLDEFDKLARRESVNGRDVGGEGVQQALLKLVEGSKVTVNVKDTRSSRSPSPI 319

Query: 287 ---------------------KYGSINTDHILFIASGA---------------------- 303
                                +  +I+T +ILFI  GA                      
Sbjct: 320 TSNYNGGSQTSQSSPPPGPRVEQITIDTTNILFIFCGAFVGLDKIVLRRVAKPTIGFGSE 379

Query: 304 -------------------FHVSRPA------------------DLLPEIQGRFPVRVHL 326
                               H+ +P                     +PE+ GR      L
Sbjct: 380 PIRNGDALPREMYAHLPHQPHMVKPGTSGFTPLDLTTPADLQAFGFIPELIGRIHNICAL 439

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L+  +   ILT+  ++L+ QYK L +T    L FT  ++ A+A+ A    +     GA
Sbjct: 440 TPLSLDELLRILTEPRNSLVAQYKALFETYPSRLFFTSRALYAIAERAAKNET-----GA 494

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           R L+  MERVL +  F A       VVID   V+
Sbjct: 495 RGLKMEMERVLAEPMFDAP---MPYVVIDEACVK 525


>gi|321258063|ref|XP_003193801.1| ATP-dependent Clp protease ATP-binding subunit [Cryptococcus gattii
           WM276]
 gi|317460271|gb|ADV22014.1| ATP-dependent Clp protease ATP-binding subunit, putative
           [Cryptococcus gattii WM276]
          Length = 611

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 150/394 (38%), Gaps = 42/394 (10%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+L++GPTG GKT ++R LARL   PF+  + T +T+ GYVG +VE  +  L+  A
Sbjct: 218 IEKSNVLMIGPTGTGKTLMARTLARLLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID---- 166
              V ++    +         +R    + G         V +  LR  E +   +     
Sbjct: 278 NYDVSKAEVGVIHIDEIDKIAKRGGSDVGGSGRDVGGEGVQQALLRLLEGTSLMLSAKAP 337

Query: 167 -IEVADTSSDISNF-------------DIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            I  +  +  +S+F             + P  +S  +      +     S +    + SV
Sbjct: 338 AISSSTHNPSVSSFPPVPPGVGPGNPSNTPKASSRAVSGDPPGWESNNSSNKGPGGKRSV 397

Query: 213 QKCYPELMRDESDRLIDMDT--VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
           ++  P    +        DT  V   +I  V +   V L++   I  R     IG     
Sbjct: 398 REGLPGYSSNGGGTPAKGDTFIVDTSNILFVLSGAFVGLEQI--INRRIGKGSIGFG--- 452

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
                LP +  ++   +   +     + + +          L+PE  GR P+   L  L+
Sbjct: 453 ---APLPQL-ATNFPNQSSPLKGLSTVDLTT--------YGLIPEFLGRLPILSTLHPLS 500

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
             D   ILT+  + L+ QY +L    G  L FT+ ++  +A   ++       +     +
Sbjct: 501 IDDMVRILTEPNNALLKQYIKLFGNYGSELCFTDKAVREIAREGLDRGGGARGL-----R 555

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
            ++E VL D  F       +  +I    VR +  
Sbjct: 556 GILEEVLLDAMFEVPGSSVRYCLITEAVVRRNCA 589



 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPK 54
          SP+ + S L +Y++GQ+ AKR +++A+ N ++R     P+    EL P 
Sbjct: 8  SPKHLYSHLSKYVVGQERAKRILSVAVYNHYQRIAPLLPSVDEQELSPP 56


>gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [polymorphum
           gilvum SL003B-26A1]
 gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum
           gilvum SL003B-26A1]
          Length = 421

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    + K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLNHASKNNDVELAKS-----NILLVGPTGCGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGRKTS 265

Query: 305 -----HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                +V  P D                   L+PE  GR PV   L+ L++     ILT+
Sbjct: 266 IGFKANVVGPEDRRIGELFSELEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALVTILTE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F E+++ A+A  A+   +     GAR L++++E +L D 
Sbjct: 326 PKNALVKQYQRLFEMENVDLSFHEEALKAVARRAIERKT-----GARGLRSILEAILLDT 380

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            +    L+  K VVI  E V   
Sbjct: 381 MYELPGLKGVKEVVISPEVVEGK 403



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRHVLDDYVIGQNSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 182 PGGASVGILN 191
             G +   L+
Sbjct: 245 ICGGAFAGLD 254


>gi|86149706|ref|ZP_01067936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597315|ref|ZP_01100550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|85839974|gb|EAQ57233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190376|gb|EAQ94350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|284925551|gb|ADC27903.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 77  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 136

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       +Q  +  GIVF+DE DKI        
Sbjct: 137 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRS 194

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 195 ITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 254

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 255 LKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMV 314

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 315 RILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 369

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + ++  +VI  E V+ +      +  + 
Sbjct: 370 MMVDLMFELPEYKDYDIVITKEVVKDNAKALLIKRKIS 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|226532215|ref|NP_001140773.1| hypothetical protein LOC100272848 [Zea mays]
 gi|194701024|gb|ACF84596.1| unknown [Zea mays]
          Length = 346

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 143/363 (39%), Gaps = 71/363 (19%)

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+ VA   V+ ++
Sbjct: 1   MGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADFNVQAAQ 60

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           +  V            +D                             +++     ++  N
Sbjct: 61  QGMVY-----------ID-----------------------------EVDKITKKAESLN 80

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                        L ++    + +  +K  R   +                 D +  D+ 
Sbjct: 81  ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG----------------DNIQIDTK 124

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
            ++   G  F+D    I  R   + IG          +     + V++     + +    
Sbjct: 125 DILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRVGGTSSAQVTSSLLE-SVESGDL 183

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
           IA G         L+PE  GRFP+ V L +LN+     +LT+ ++ L  Q+K+L     +
Sbjct: 184 IAYG---------LIPEFIGRFPILVSLTALNEDQLVQVLTEPKNALGKQFKKLFSMNDV 234

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L FT+ ++  +A+ A++ N+     GAR L+T++E +L D  +   D +     IDA  
Sbjct: 235 KLHFTDGALRIIAEKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEKRIDAVV 289

Query: 419 VRL 421
           V  
Sbjct: 290 VDE 292


>gi|57237331|ref|YP_178344.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           RM1221]
 gi|57166135|gb|AAW34914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni RM1221]
 gi|315057700|gb|ADT72029.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++  DT    SN  + G    G   L++  +K +          S+ +    +  D  +
Sbjct: 99  ELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +Q  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 158 ILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
           V+            ++  I+T +ILF+  GAF                            
Sbjct: 217 VNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA 276

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G
Sbjct: 277 LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDG 336

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + +   +VI  E
Sbjct: 337 VNLKFEEDALRAIAQLALERKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKE 391

Query: 418 YVRLHIGDFPSETDMY 433
            V+ +      +  + 
Sbjct: 392 VVKDNAKALLIKRKIS 407



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 320

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 141/385 (36%), Gaps = 83/385 (21%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
            +       EL   NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE
Sbjct: 1   MKAQGSEDVELQKSNILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVE 60

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
            II++L+  A   V ++ R  V                                      
Sbjct: 61  NIIQNLLHNADYDVEKAARGIV-------------------------------------- 82

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              EID ++A      S     GG  V    L                   ++     + 
Sbjct: 83  YIDEID-KIARKGDTPSATRDVGGEGVQQALL-----------------KIIEGTRANVT 124

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVF--LDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
                +    + V  D+  ++   G  F  +D    I  R    G+G       R+   +
Sbjct: 125 PRGGKKYNQQEYVQVDTTNILFICGGAFHGIDGI--IKRRVGEKGLGFGARITHREERSV 182

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            E                  +A           ++PE  GR P+   L  L + D  +IL
Sbjct: 183 GE-----------------LLAMAEPEDLMKFGMIPEFIGRLPMVATLNDLKEDDLVIIL 225

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ L+ QY++L + E + L F+++S+ A+A  A+  NS     GAR L+ +ME  + 
Sbjct: 226 TQPKNALVKQYQKLFEIEKVKLTFSKESLRAIAREAMRRNS-----GARGLRAIMEDAML 280

Query: 399 DISFSASDLQE-KTVVIDAEYVRLH 422
           ++ +     +  K   I    +  H
Sbjct: 281 EVMYDVPFREGVKECKITENVITKH 305


>gi|307747216|gb|ADN90486.1| ATP-dependent Clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315927197|gb|EFV06547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315929560|gb|EFV08749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315932559|gb|EFV11491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 77  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 136

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       +Q  +  GIVF+DE DKI        
Sbjct: 137 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRS 194

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 195 ITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 254

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 255 LKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMV 314

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 315 RILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 369

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + ++  +VI  E V+ +      +  + 
Sbjct: 370 MMVDLMFELPEYKDYDIVITKEVVKDNAKALLIKRKIS 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
 gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
          Length = 420

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 110 SNILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 169 NVERAQ-RGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                    + P
Sbjct: 228 PQQEFLQVDTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEEKRTGEYLRQTEP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+ +    IL++ ++ L+ QY++L + E + LDFT+
Sbjct: 288 EDLLKFGLIPEFVGRLPVIATLEDLDIAALVKILSEPKNALVKQYQKLFEMENVELDFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++  +A  A+   +     GAR L++++E +L D  F    +     V++D + V    
Sbjct: 348 DALTTVAKKAIERKT-----GARGLRSILEGILLDTMFDLPGMDGVDEVMVDKDVVEGRK 402

Query: 424 GDF 426
              
Sbjct: 403 EPI 405



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI + LD Y+IGQ+ AKR +++A+ N ++R    A   D EL   NILLVGPTG GK
Sbjct: 63  TPQEICNVLDDYVIGQKQAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIVYIDE 182

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 183 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFAGLE 252


>gi|86153860|ref|ZP_01072063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842821|gb|EAQ60033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++   T    SN  + G    G   L++  +K +          S+ +    +  D  +
Sbjct: 99  ELQDDGTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +Q  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 158 ILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
           V+            ++  I+T +ILF+  GAF                            
Sbjct: 217 VNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA 276

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G
Sbjct: 277 LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDG 336

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + +   +VI  E
Sbjct: 337 VNLKFEEDALRAIAQLALERKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKE 391

Query: 418 YVRLHIGDFPSETDMY 433
            V+ +      +  + 
Sbjct: 392 VVKDNAKALLIKRKIS 407



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R        D  EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDGTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|121613694|ref|YP_999990.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157414572|ref|YP_001481828.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167004946|ref|ZP_02270704.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205356070|ref|ZP_03222838.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|87250025|gb|EAQ72983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157385536|gb|ABV51851.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205346194|gb|EDZ32829.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++  DT    SN  + G    G   L++  +K +          S+ +    +  D  +
Sbjct: 99  ELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +Q  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 158 ILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
           V+            ++  I+T +ILF+  GAF                            
Sbjct: 217 VNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA 276

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G
Sbjct: 277 LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDG 336

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + +   +VI  E
Sbjct: 337 VNLKFEEDALRAIAQLALERKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKE 391

Query: 418 YVRLHIGDFPSETDMY 433
            V+ +      +  + 
Sbjct: 392 VVKDNAKALLIKRKIS 407



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|86151365|ref|ZP_01069580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841712|gb|EAQ58959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 77  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 136

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       +Q  +  GIVF+DE DKI        
Sbjct: 137 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRS 194

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 195 ITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 254

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 255 LKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMV 314

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 315 RILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 369

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + ++  +VI  E V+ +      +  + 
Sbjct: 370 MMVDLMFELPEYKDYDIVITKEVVKDNAKALLIKRKIS 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|218561938|ref|YP_002343717.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|21263489|sp|Q9PIM0|CLPX_CAMJE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|112359644|emb|CAL34429.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
          Length = 417

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 87  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 146

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       +Q  +  GIVF+DE DKI        
Sbjct: 147 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRS 204

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 205 ITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 264

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 265 LKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMV 324

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 325 RILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 379

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + ++  +VI  E V+ +      +  + 
Sbjct: 380 MMVDLMFELPEYKDYDIVITKEVVKDNAKALLIKRKIS 417



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 70  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 129

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 130 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 189

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 190 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSN 249

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 250 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 298


>gi|283955698|ref|ZP_06373189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792653|gb|EFC31431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 407

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +++  DT    SN  + G    G   L++  +K +          S+ +    +  D  +
Sbjct: 99  ELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +Q  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 158 ILTRLLQAADGDVQRAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
           V+            ++  I+T +ILF+  GAF                            
Sbjct: 217 VNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA 276

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G
Sbjct: 277 LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDG 336

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + +   +VI  E
Sbjct: 337 VNLKFEEDALRAIAQLALERKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKE 391

Query: 418 YVRLHIGDFPSETDMY 433
            V+ +      +  + 
Sbjct: 392 VVKDNAKALLIKRKIS 407



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRYIIGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYIIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 288


>gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
 gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
          Length = 424

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGSGKTLLAQTMARLLDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVERAQ-RGIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEERRTGETLQQCEP 290

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L  L+++    ILT  ++ L+ QY++L   EG+ L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLMDLDEAALVEILTAPKNALVKQYQKLFDMEGVKLGFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L++++E +L D  F    +     +++D + V    
Sbjct: 351 DALVAIARKAITRKT-----GARGLRSILEGLLLDTMFDLPSMDGVDEIMVDKDVVEGRK 405

Query: 424 GDF 426
              
Sbjct: 406 DPV 408



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AKR +++A+ N ++R    A   D EL   NILLVGPTG GK
Sbjct: 66  TPHEICEHLDQYVIGQAKAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ +ARL   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 126 TLLAQTMARLLDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  A+   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKADNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 246 ICGGAFAGLE 255


>gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
 gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
          Length = 421

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 65/321 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    + K  D+E+A +     N  + G    G  +L++  ++++          ++
Sbjct: 93  NHYKRLNHASKNNDVELAKS-----NILLVGPTGCGKTHLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKITRKAENPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGRSTS 265

Query: 305 -----HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V  P D                   L+PE  GR PV   L+ L++     IL +
Sbjct: 266 IGFAASVMAPEDRKTGELFAELEPEDLLKFGLIPEFVGRLPVIATLEDLDEDALVSILRE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++ A+A  A+   +     GAR L++++E +L + 
Sbjct: 326 PKNALVAQYQRLFEMENVELTFHEDALKAIARKAIERKT-----GARGLRSILEAILLET 380

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            +    L+  K VVI AE V 
Sbjct: 381 MYELPGLKGVKEVVISAEVVD 401



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRGVLDDYVIGQGRAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 THLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 184

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ +  AE   I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKITRKAENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 182 PGGASVGILN 191
             G +   L+
Sbjct: 245 ICGGAFAGLD 254


>gi|324511044|gb|ADY44609.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein
           [Ascaris suum]
          Length = 545

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 185/489 (37%), Gaps = 143/489 (29%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LDR+++GQ  AK+ +A+ +   +RR     +            VG    G + 
Sbjct: 118 PLQISEYLDRFVVGQSQAKKTLAVGVYQHYRRLNHNIENN----------VGSIASGASE 167

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++R     +  P                R V      L       VR   R     +   
Sbjct: 168 LAR---NGSNVP----------------RGV------LYQEDYRTVRGDIRVNAYSE--- 199

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                             T  +FR       I + E  I +  +     N  + G + VG
Sbjct: 200 ----------PPTAPQRPTSPLFRS------IPETEPPIRLEKS-----NILLLGPSGVG 238

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV------E 242
              +++  ++++         + +  C    M        D+++V +  +Q         
Sbjct: 239 KTFVTQTLARILD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQNAGGNVDRA 290

Query: 243 NYGIVFLDEFDKIVA---RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             GIVFLDE DKI A     S     VS EGVQ  LL LVEG+ V+ K G          
Sbjct: 291 QQGIVFLDEIDKIAAAHNTQSHAYRDVSGEGVQHALLKLVEGTVVNVKSGRKTVATQQDT 350

Query: 290 -SINTDHILFIASGAFH-----------------------------------VSRPAD-- 311
             ++T  +LF+ASGAF                                    V+R  D  
Sbjct: 351 VQVDTSDVLFVASGAFTALDRIVGKRLDQKMLGFGAKSGNQRITADDKMESIVARKRDEL 410

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE+ GRFPV V   S +K+    +LT+  ++L+ Q K     +G+
Sbjct: 411 LQQADQGDLISFGIVPELVGRFPVIVPFHSFDKNMLVRVLTEPANSLLAQMKLQFAIDGV 470

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L F++D+++ +A++A+   +     GAR L++++E+VL +  F       ++V +  + 
Sbjct: 471 DLSFSQDALEEIAEMALERKT-----GARALRSIVEKVLLEAKFLVPGSDIESVHVTRDC 525

Query: 419 VRLHIGDFP 427
           VR  + D+ 
Sbjct: 526 VRG-LSDYV 533


>gi|291221693|ref|XP_002730831.1| PREDICTED: ClpX caseinolytic protease X homolog [Saccoglossus
           kowalevskii]
          Length = 608

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 138/374 (36%), Gaps = 77/374 (20%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           +LR E    NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  
Sbjct: 262 ELRVE--KSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAK 319

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           L+  A   V ++++ +                       SNT     K +       +  
Sbjct: 320 LLMDANFHVDKAQQGK----------------------NSNTFLSSVKLICKIPGIHQLR 357

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           D+                G   G+L L E     V     +K    +VQ           
Sbjct: 358 DV-------------GGEGVQQGLLKLLEGTIVNVPERSSRKLRGETVQ----------- 393

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS---------REGVQRDL 275
                   V   +I  V +     LD    I  R     +G           R     D+
Sbjct: 394 --------VDTTNILFVASGAFNGLDRI--ISRRKQQKYLGFGAPANISPGRRAATAGDI 443

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           L + EG          +    L  +           ++PE  GRFPV V L SL++    
Sbjct: 444 LSITEGQDAKADNEERDALLALVESRDLIEF----GMIPEFVGRFPVAVSLTSLDEEMLV 499

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+  + L+ Q+  L+  +   L FT  ++ A+A +A+   +     GAR L+ ++E 
Sbjct: 500 RILTEPRNALVPQFHALLGMDKAELTFTPGALKAIAQMALERKT-----GARGLRAIVEG 554

Query: 396 VLEDISFSASDLQE 409
           VL D  F       
Sbjct: 555 VLLDAMFEVPGSGI 568



 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 110/307 (35%), Gaps = 70/307 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   LD+Y+IGQ  +K+ +++A+ N ++R                    PT V  TA ++
Sbjct: 159 IYEYLDKYVIGQAQSKKVLSVAVYNHYKRIYTNP---------------PTTVKPTAEAQ 203

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
              R+ GA F   E     +I  +G +   +    +  + N            Q+   A+
Sbjct: 204 E-NRIQGAIFTPRE---LLQISGIGNHGSALGASSMPQSGN------------QSGDAAD 247

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
            R+                    L +    +  ++          SN  + G    G   
Sbjct: 248 RRVA----------------GSDLLNSNTHELRVE---------KSNILLLGPTGSGKTL 282

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFL 249
           L++  +K +          ++ +        ES   +L+     H D  Q  +N    FL
Sbjct: 283 LAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLMDANFHVDKAQQGKNSN-TFL 341

Query: 250 DEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SINTDHILF 298
                I           V  EGVQ+ LL L+EG+ V+               ++T +ILF
Sbjct: 342 SSVKLICKIPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPERSSRKLRGETVQVDTTNILF 401

Query: 299 IASGAFH 305
           +ASGAF+
Sbjct: 402 VASGAFN 408


>gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
 gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM
           12614]
          Length = 421

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 158/373 (42%), Gaps = 71/373 (19%)

Query: 107 VDVAINIVRESRRDE-VREQASINAEERILDALV-----GKTATSNTREVFRKKLRDGEI 160
           V++ ++I+RE  +   V+ +  I   + I D L        +A            +    
Sbjct: 41  VELCMDIIREENKSSLVKSRDGIPTPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNH 100

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           + K  D+E+A +     N  + G    G   L++  ++++          ++ +    + 
Sbjct: 101 ASKNNDVELAKS-----NILLVGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-YVG 154

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 155 EDVENIILKLLQSADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKI 213

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF--------------------HVS 307
           +EG+  S            ++  ++T +ILFI  GAF                     V 
Sbjct: 214 MEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISDRGTQTSIGFQAKVH 273

Query: 308 RPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
            P D                   L+PE  GR PV   L+ L++     ILT+ ++ L+ Q
Sbjct: 274 APEDRRIGELFAELEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALVTILTEPKNALVKQ 333

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L + E + L F E+++ A+A  A+   +     GAR L++++E +L D  +    L+
Sbjct: 334 YQRLFEMEQVELSFHEEALKAIARRAIERKT-----GARGLRSILEAILLDTMYELPGLK 388

Query: 409 E-KTVVIDAEYVR 420
             K VVI  E V+
Sbjct: 389 GVKEVVISPEVVK 401



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 65  TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 182 PGGASVGILN 191
             G +   L+
Sbjct: 245 ICGGAFAGLD 254


>gi|319789634|ref|YP_004151267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio
           ammonificans HB-1]
 gi|317114136|gb|ADU96626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio
           ammonificans HB-1]
          Length = 410

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 59/304 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V D   + SN  + G    G   L+   +K++          ++ +    +  D  + L+
Sbjct: 102 VDDVELEKSNILLIGPTGSGKTLLARSLAKLLDVPFAIADATTLTEAG-YVGEDVENILL 160

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  + 
Sbjct: 161 RLIQAADYDIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANV 219

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +Y  I+T +ILFI  GAF                               
Sbjct: 220 PPQGGRKHPHQQYIQIDTSNILFICGGAFVGLEDIIARRIGKGAMGFTADVDKKKMERDE 279

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR PV   LK L + D   +LT+ ++ L+ QYK+L++ EG
Sbjct: 280 LLKYVEPDDLVKFGLIPELIGRLPVIATLKELKEEDLVRVLTEPKNALVKQYKKLLEMEG 339

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L FTE+++  +A  A+   +     GAR L+ +ME+++ D+ F     ++ K V+IDA
Sbjct: 340 VELVFTEEALREIAREAIRRKT-----GARGLRAIMEKLMTDVMFEVPTRKDIKKVIIDA 394

Query: 417 EYVR 420
           E V+
Sbjct: 395 EAVK 398



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 7/235 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K+    +P+EI   LD+Y+IGQ++AK+ +++A+ N ++R      + D EL   NILL+
Sbjct: 56  VKIDKLPTPKEIKEFLDQYVIGQEEAKKVLSVAVYNHYKRIMSGGSVDDVELEKSNILLI 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ R
Sbjct: 116 GPTGSGKTLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAADYDIEKAER 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQQYIQI 235

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           D SN   I GGA VG+ ++          G    +     +    L   E D L+
Sbjct: 236 DTSNILFICGGAFVGLEDIIARRIGKGAMGFTADVDKKKMERDELLKYVEPDDLV 290


>gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
 gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1]
          Length = 420

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++            ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGTGKTLLAQTLARTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQSSDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  + +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVEKAQ-HGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPA------------- 310
              ++  ++T +ILFI  GAF                    HV+ P              
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPEKRKVGELLEKSEP 290

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L+      IL + ++ L+ QY++L + E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLHDLDVDALVTILKEPKNALVKQYRKLFELEDVDLTFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           +++ A+A+ A+   +     GAR L++++E +L D  F   D++    +VID + V    
Sbjct: 351 EALVAIAERAIKRKT-----GARGLRSIVEGILLDTMFDLPDMEGVAEIVIDQDVVEGKK 405

Query: 424 GDF 426
              
Sbjct: 406 DPI 408



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + L+ Y+IGQ  AKR +++A+ N ++R +        EL   NILLVGPTG GK
Sbjct: 66  TPSEIFATLNDYVIGQNSAKRNLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++   V    
Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQHGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ +  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+  +++   K              +K    L + E + L+
Sbjct: 246 ICGGAFAGLDKIIADRLQKRSIGFGAHVADPEKRKVGELLEKSEPEDLL 294


>gi|152990291|ref|YP_001356013.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratiruptor sp.
           SB155-2]
 gi|151422152|dbj|BAF69656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitratiruptor
           sp. SB155-2]
          Length = 409

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 59/347 (17%)

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           ILD           ++VF   + +      + D+   DT    SN    G    G   ++
Sbjct: 67  ILD--QYVIGQEKAKKVFSVAVYNHYKRIFKQDMVDEDTEIAKSNVLFIGPTGSGKTLMA 124

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
           +  +KV+          S+ +    +  D  + L  +     + ++  E  GIVF+DE D
Sbjct: 125 QTMAKVLDVPLAIADATSLTEAG-YVGEDVENILTRLYHAADEDVKKAEK-GIVFIDEID 182

Query: 254 KIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIA 300
           KI        I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILFI 
Sbjct: 183 KIARLSENRSITRDVSGEGVQQALLKIIEGSVVNISAKGGRKHPNQEFVQIDTSNILFIC 242

Query: 301 SGAF--------------------------------HVSRPADL-----LPEIQGRFPVR 323
            GAF                                +   P DL     +PE+ GR  + 
Sbjct: 243 GGAFDGLTDIIKRRLGGNVLGFGQEKRSKRDESDLLNYVEPDDLVHYGLIPELIGRLHMI 302

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
             L  L++ D   ILT+ ++ L+ QYK+L   + + L F +++++A+AD+A+   +    
Sbjct: 303 ATLNELSRDDMVRILTEPKNALVKQYKKLFALDEVELSFEKEALEAIADLAIKRKT---- 358

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSET 430
            GAR L+++ME ++ DI F   + +   VVI  + +         + 
Sbjct: 359 -GARGLRSIMEEIMVDIMFDLPEYKGYEVVITKDVIEKRSAPILVKK 404



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 13/239 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILL 58
           + L +  +P+E+ + LD+Y+IGQ+ AK+  ++A+ N ++R       D   E+   N+L 
Sbjct: 53  LTLDYLPTPKELKAILDQYVIGQEKAKKVFSVAVYNHYKRIFKQDMVDEDTEIAKSNVLF 112

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ +A++   P    + T  TE GYVG +VE I+  L   A   V+++ 
Sbjct: 113 IGPTGSGKTLMAQTMAKVLDVPLAIADATSLTEAGYVGEDVENILTRLYHAADEDVKKAE 172

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +     DE+ + A ++    I   + G+       ++    + +                
Sbjct: 173 KGIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNISAKGGRKHPNQEFVQ 232

Query: 174 SDISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            D SN   I GGA  G+ ++ +  L   V+G G++K+ +         L   E D L+ 
Sbjct: 233 IDTSNILFICGGAFDGLTDIIKRRLGGNVLGFGQEKRSKRDESD---LLNYVEPDDLVH 288


>gi|315499704|ref|YP_004088507.1| ATP-dependent clp protease, ATP-binding subunit clpx [Asticcacaulis
           excentricus CB 48]
 gi|315417716|gb|ADU14356.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis
           excentricus CB 48]
          Length = 419

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 160/380 (42%), Gaps = 71/380 (18%)

Query: 107 VDVAINIVRES-RRDEVREQASINAEERILDALV-----GKTATSNTREVFRKKLRDGEI 160
           V++ ++I+RE  +   V+ +  +   + I + L         A            +    
Sbjct: 41  VELCMDIIREEHKIAFVKSKDGVPTPKEIREVLDDYVIGQAQAKKVLSVAVHNHYKRLNH 100

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           + K  D+E+A +     N  + G    G   L++  ++++          ++ +    + 
Sbjct: 101 AAKGNDVELAKS-----NIMLIGPTGSGKTLLAQTLARIIDVPFTMADATTLTEAG-YVG 154

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 155 EDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 213

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  S            ++  ++T +ILFI  GAF                       
Sbjct: 214 MEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISGRGKGTSIGFGATVK 273

Query: 305 -----------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                      H   P DL     +PE  GR PV   L+ L+++    ILT+ ++ L+ Q
Sbjct: 274 DPEERRLGEVLHQVEPDDLMKFGLIPEFIGRLPVLATLEDLDEATLVKILTEPKNALVKQ 333

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y  L + E + L FT++++ A+A  A+   +     GAR L++++E +L D  +   ++Q
Sbjct: 334 YARLFEMENVTLTFTDEALFAVAKKAIVRKT-----GARGLRSILEGILLDTMYELPNMQ 388

Query: 409 E-KTVVIDAEYVRLHIGDFP 427
             + VVI+AE V        
Sbjct: 389 GVEEVVINAEVVEERAQPLL 408



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R    A   D EL   NI+L+GPTG GK
Sbjct: 65  TPKEIREVLDDYVIGQAQAKKVLSVAVHNHYKRLNHAAKGNDVELAKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
           I GGA  G+  +     K    G    ++   ++     L + E D L+
Sbjct: 245 ICGGAFAGLEKIISGRGKGTSIGFGATVKDPEERRLGEVLHQVEPDDLM 293


>gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|238691227|sp|B2IGP2|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 421

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/323 (23%), Positives = 136/323 (42%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    + K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLNHATKHNDVELAKS-----NILLIGPTGSGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQASDYNVERAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKTTS 265

Query: 305 -----HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V  P D                   L+PE  GR PV   L+ L++   + ILT+
Sbjct: 266 IGFAASVQAPDDRRTGEIFRKVEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E   L F +++++ +A  A+   +     GAR L+++ME +L D 
Sbjct: 326 PKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKT-----GARGLRSIMESILLDT 380

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L   + VVI  + V   
Sbjct: 381 MFDLPGLDSVEQVVIGPDVVEGK 403



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPREICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  +        
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG 226


>gi|315637948|ref|ZP_07893134.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           upsaliensis JV21]
 gi|315481983|gb|EFU72601.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter
           upsaliensis JV21]
          Length = 409

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+E  DT    SN  + G    G   L++  ++ +          S+ +    +  D  +
Sbjct: 101 DLEDDDTELFKSNILLVGPTGSGKTLLAQTLARFLDVPIAICDATSLTEAG-YVGEDVEN 159

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +     + ++  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 160 ILTRLLQAANNDVERAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 218

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILF+  GAF                            
Sbjct: 219 VNIPPKGGRKHPNQDFIQIDTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDDSGEKDKD 278

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  +   L  L++ D   ILT+ ++ +I QY++L   +G
Sbjct: 279 LLEKIEPDDLVHFGLIPELIGRLHIIASLNELDEDDMVRILTEPKNAIIKQYQKLFAIDG 338

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + ++  +VI  E
Sbjct: 339 VNLKFDEDALRAIAKLALERKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKE 393

Query: 418 YVRLHIGDFPSETDMY 433
            V         +  + 
Sbjct: 394 VVCEGAKALLIKKKIS 409



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 9/231 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTG 63
           N +P+ + + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 62  NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRLFRADLEDDDTELFKSNILLVGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A N V  +++    
Sbjct: 122 SGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDVERAQKGIVF 181

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 182 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQIDTSN 241

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                G +     L ++  + +G         S +K    L + E D L+ 
Sbjct: 242 ILFVCGGAFD--GLEQILKRKLGDKVVGFFDDSGEKDKDLLEKIEPDDLVH 290


>gi|153951402|ref|YP_001398676.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938848|gb|ABS43589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 406

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 143/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 76  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 135

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       ++  +  GIVF+DE DKI        
Sbjct: 136 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVERAQK-GIVFIDEIDKIARMSENRS 193

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 194 ITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 253

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 254 LKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMV 313

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ +I QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 314 RILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 368

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + +   +VI  E V+ +      +  + 
Sbjct: 369 MMVDLMFELPEYKNYDIVITKEVVKDNAKALLIKRKIS 406



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 17/235 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 59  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V  +++    
Sbjct: 119 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVERAQKGIVF 178

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 179 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 238

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLID 229
                G +   L        ++      K+              L + E D L+ 
Sbjct: 239 ILFVCGGAFDGLET------ILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVH 287


>gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
 gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM
           4915]
 gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO1]
 gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           BO2]
          Length = 424

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|149186484|ref|ZP_01864796.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
 gi|148829711|gb|EDL48150.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp.
           SD-21]
          Length = 418

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 138/327 (42%), Gaps = 65/327 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +   K  D+E+A +     N  + G    G   L++  ++            ++
Sbjct: 94  NHYKRLKHGGKAGDVELAKS-----NILLVGPTGCGKTLLAQTLARTFDVPFTMADATTL 148

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  + +GIV++DE DKI  +     I   VS EG
Sbjct: 149 TEAG-YVGEDVENIILKLLQASDYNVEKAQ-HGIVYIDEIDKITRKAENPSITRDVSGEG 206

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL L+EG++ S            ++  ++T +ILFI  GAF               
Sbjct: 207 VQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIADRLQKRS 266

Query: 305 -----HVSRPA-------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                HV+ P                     L+PE  GR PV   L+ L+      ILT+
Sbjct: 267 IGFGAHVADPDKRRIGELLEKGEPEDLLKFGLIPEFVGRLPVIATLRDLDTDALITILTE 326

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY +L + E + L F ED++  +A+ A+   +     GAR L++++E +L D 
Sbjct: 327 PKNALCKQYAKLFELENVELTFQEDALKKIAEKAIARKT-----GARGLRSIVEGILLDT 381

Query: 401 SFSASDLQEKT-VVIDAEYVRLHIGDF 426
            F   D+   T +VIDA+ V       
Sbjct: 382 MFDLPDMDGVTEIVIDADVVEGKKNPI 408



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   L+ Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 66  TPKEIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHGGKAGDVELAKSNILLVGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++   V    
Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQHGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ +  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              ++    L + E + L+
Sbjct: 246 ICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRRIGELLEKGEPEDLL 294


>gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC
           25840]
 gi|166214760|sp|A5VQN3|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis
           ATCC 25840]
          Length = 427

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|167835013|ref|ZP_02461896.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
          Length = 156

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 116/156 (74%)

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
           ++++TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+  DF  IL  T
Sbjct: 1   TTINTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVAT 60

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +++L+ QY+ L+ TE + L+F ++ I  LA++A  +N    +IGARRL TV+E++LE++S
Sbjct: 61  DASLVKQYQALLATEDVKLEFADEGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVS 120

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           F+A +   ++V IDA YV   +G+   + D+  ++L
Sbjct: 121 FAAGNHAGESVTIDAAYVDRALGEVSKDEDLSRYVL 156


>gi|115379327|ref|ZP_01466436.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363672|gb|EAU62798.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
          Length = 219

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 102/215 (47%), Positives = 142/215 (66%), Gaps = 22/215 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F+PRE+VSELDRYI+GQ  AKRAVAIALRNRWRRQ++  DLR+E+ PKNI+++GPTGVGK
Sbjct: 4   FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 63

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE   ++V+ +A
Sbjct: 64  TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 123

Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164
              AE+R+++ L G                           + RE  R +LR G + D+E
Sbjct: 124 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 183

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
           +D+E +D++          G     +NL +LF  +
Sbjct: 184 VDVETSDSAPTFLRNFTGHGMEEVGVNLQDLFKNM 218


>gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis biovar Abortus 2308]
 gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|254689335|ref|ZP_05152589.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 6 str. 870]
 gi|254693819|ref|ZP_05155647.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697468|ref|ZP_05159296.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254730365|ref|ZP_05188943.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 4 str. 292]
 gi|256044766|ref|ZP_05447670.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256061192|ref|ZP_05451344.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella neotomae
           5K33]
 gi|256257581|ref|ZP_05463117.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           bv. 9 str. C68]
 gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|21263465|sp|Q8YHC7|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|68067919|sp|Q9L7X5|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123727373|sp|Q2YPX2|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763837|sp|C0RJ80|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A
           (P-loop):Bacterial chromosomal replication initiator
           protein, DnaA:AAA ATP [Brucella melitensis biovar
           Abortus 2308]
 gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis ATCC 23457]
 gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus str. 2308 A]
 gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. 16M]
 gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 4 str. 292]
 gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 6 str. 870]
 gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 9 str. C68]
 gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           abortus bv. 3 str. Tulya]
 gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           neotomae 5K33]
 gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 2 str. 63/9]
 gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           abortus bv. 5 str. B3196]
 gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis M28]
 gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella
           melitensis M5-90]
          Length = 424

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|125975223|ref|YP_001039133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           thermocellum ATCC 27405]
 gi|256003115|ref|ZP_05428107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 2360]
 gi|281419197|ref|ZP_06250213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum JW20]
 gi|166214772|sp|A3DJ11|CLPX_CLOTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|125715448|gb|ABN53940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           thermocellum ATCC 27405]
 gi|255992806|gb|EEU02896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 2360]
 gi|281407063|gb|EFB37325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum JW20]
 gi|316939387|gb|ADU73421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           thermocellum DSM 1313]
          Length = 431

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 60/309 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++ +D     SN  + G    G   L++  ++++          S+ +    +  D  +
Sbjct: 99  DVKGSDVELQKSNIVMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 158 ILLKLIQAADYDIERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTI 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------HVSRPA------------- 310
            S            ++  I+T +ILFI  GAF          + + +             
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKIIQNRIGKKSMGFGAKIESPKKA 276

Query: 311 -----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR PV V L SL++     ILT+ ++ L+ QY++L 
Sbjct: 277 NVGEILKNILPQDLLKFGLIPEFVGRLPVIVTLHSLDREALVKILTEPKNALVKQYQKLF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + + +IL+F +++I+A+AD A+  N+     GAR L+ ++E ++ D+ +     +  +  
Sbjct: 337 EMDDVILEFEKEAIEAIADKAIERNT-----GARGLRAILEEIMLDVMYDIPSQENVEKC 391

Query: 413 VIDAEYVRL 421
           +I  + V  
Sbjct: 392 IITKDTVEK 400



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 11/237 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L     P EI   LD+Y++GQ  AK+A+A+A+ N ++R        D EL   NI+++G
Sbjct: 57  ELNDIPKPSEIKEILDQYVVGQDTAKKALAVAVYNHYKRINSDVKGSDVELQKSNIVMLG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + + 
Sbjct: 117 PTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAEKG 176

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    +                   D
Sbjct: 177 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQID 236

Query: 176 ISNF-DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +N   I GGA  GI  + +      S   G+  +   + +V +    ++  +  + 
Sbjct: 237 TTNILFICGGAFDGIEKIIQNRIGKKSMGFGAKIESPKKANVGEILKNILPQDLLKF 293


>gi|291533222|emb|CBL06335.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas
           hypermegale ART12/1]
          Length = 275

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 30/237 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MKL     PR++V ELD+YI+GQ  AKR+VAIALRNRWR + LP D+RDE++PKNIL++G
Sbjct: 1   MKLNEQI-PRQVVEELDKYIVGQSQAKRSVAIALRNRWRSRHLPEDMRDEIIPKNILMIG 59

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            TGVGKT I+RRLA+L  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ ++++ + +
Sbjct: 60  STGVGKTEIARRLAKLVKAPFVKVEATKFTEVGYVGRDVESMVRDLAESAVRMLKQEKLE 119

Query: 121 EVREQASINAEERILDALVGKTATSNT-----------------------------REVF 151
           +V+++A   A+ERILD  V +  +S                               RE  
Sbjct: 120 QVQDKAKEMAQERILDIYVPEPKSSAVSNPLSAIFGGANKEEESTEKVEEPKYSAGREWC 179

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           RK+L  GE+ +  I+I+V   ++ +       G      N+ ++   +M   RK   
Sbjct: 180 RKRLLKGELENDIIEIDVEPKAAPVIGMFAGSGMEDMSNNIQDMIGNLMPKKRKNAK 236


>gi|312792982|ref|YP_004025905.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180122|gb|ADQ40292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 433

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDLYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|313903080|ref|ZP_07836474.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466582|gb|EFR62102.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter subterraneus DSM 13965]
          Length = 419

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 60/312 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D     SN  + G    G   L++  +K++          S+ +    +  D  + L+
Sbjct: 102 IDDVELQKSNILMIGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENILL 160

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 161 KLIQAADYDIERAE-RGIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASV 219

Query: 287 -----------KYGSINTDHILFIASGAFH------VSR--------------------- 308
                      ++  I+T +ILFI  GAF        SR                     
Sbjct: 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFEGLDKIIASRIGRRVMGFGAEVRSKQETNVG 279

Query: 309 -------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV   L +L++     ILT+ ++ L+ QY++L+  +
Sbjct: 280 DILRHIMPEDLLKFGLIPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYQKLLALD 339

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVID 415
            + L+F  +++ A+A  A+  N+     GAR L+ ++E ++ D+ +      +   VV+ 
Sbjct: 340 NVELEFEPEALRAIAQEALKRNT-----GARGLRAIVEELMLDLMYELPGRDDVARVVVT 394

Query: 416 AEYVRLHIGDFP 427
            E VR       
Sbjct: 395 EETVRQRREPIM 406



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 11/238 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           ++L     P EI + LD+Y+IGQ+ AK+ +++A+ N ++R  L   + D EL   NIL++
Sbjct: 56  VELKDLPKPAEIKAFLDQYVIGQERAKKILSVAVYNHYKRIHLGGRIDDVELQKSNILMI 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 116 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAER 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +                   
Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 175 DISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMS--VQKCYPELMRDESDRL 227
           D +N     G +   L+    S +  +VMG G + + +    V      +M ++  + 
Sbjct: 236 DTTNILFICGGAFEGLDKIIASRIGRRVMGFGAEVRSKQETNVGDILRHIMPEDLLKF 293


>gi|388977|emb|CAA80816.1| ATP-binding protein [Escherichia coli]
          Length = 424

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 143/374 (38%), Gaps = 74/374 (19%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222

Query: 287 -----------KYGSINTDHILFIASGAFH------------------------------ 305
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGHWCWRSGKAKSDKAS 282

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   L  L++     IL + ++ L  QY+ L  
Sbjct: 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++DA+A  A+   +     GAR L++++E  L D  +    +++ + VV
Sbjct: 343 LEGVDLEFRDEALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVV 397

Query: 414 IDAEYVRLHIGDFP 427
           ID   +        
Sbjct: 398 IDESVIDGQSKPLL 411



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ 225


>gi|146295916|ref|YP_001179687.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166214768|sp|A4XHW1|CLPX_CALS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145409492|gb|ABP66496.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 433

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 65/321 (20%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
             +++ D+E+  +     N  + G    G   L++  +K++          ++ +    +
Sbjct: 99  HDNRKDDVEIQKS-----NILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YV 152

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 153 GEDVENILLRLIQNADYDIERAE-RGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLK 211

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  S            ++  I+T +ILFI  GAF                      
Sbjct: 212 ILEGTIASVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIERRIGEKTLGFNAKI 271

Query: 305 ------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DLL     PE  GR P+ V L +L+K     ILT+ ++ L+ 
Sbjct: 272 ESKKEKKIGDILRQIMPQDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVK 331

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD- 406
           QY++L   +G+ L+F +++++A+AD A+  N+     GAR L+ +ME ++ D+ F     
Sbjct: 332 QYQKLFAMDGVELEFEKEALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSN 386

Query: 407 LQEKTVVIDAEYVRLHIGDFP 427
            + + V+I    V        
Sbjct: 387 DKIEKVIITKAAVLKEDKPIV 407



 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 8/195 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R     + +D  E+   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDNRKDDVEIQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIVYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSE 194
            I GGA  GI  + E
Sbjct: 243 FICGGAFEGIEKIIE 257


>gi|283955251|ref|ZP_06372752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793288|gb|EFC32056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 407

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 55/338 (16%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + +++  DT    SN  + G    G   L++  +K +   
Sbjct: 77  QDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVP 136

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +       ++  +  GIVF+DE DKI        
Sbjct: 137 IAICDATSLTEAG-YVGEDVENILTRLLQAADGDVERAQK-GIVFIDEIDKIARMSENRS 194

Query: 264 I--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS V+            ++  I+T +ILF+  GAF      
Sbjct: 195 ITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETI 254

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL     +PE+ GR  V   L  LN+ D  
Sbjct: 255 LKRKLGDKVVGFFDDGKEENKALLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMI 314

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ ++ QY++L   +G+ L F ED++ A+A +A+   +     GAR L++++E 
Sbjct: 315 RILTEPKNAIVKQYQKLFAIDGVNLKFEEDALRAIAQLALERKT-----GARGLRSIIEE 369

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433
           ++ D+ F   + +   +VI  E V+ +      +  + 
Sbjct: 370 MMVDLMFELPEYKNYDIVITKEVVKDNEKALLIKRKIS 407



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTG 63
           + +P+E+ + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 60  DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V  +++    
Sbjct: 120 SGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVERAQKGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 180 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 239

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                G +   L    +  + +G           ++    L + E D L+ 
Sbjct: 240 ILFVCGGAFDGLET--ILKRKLGDKVVGFFDDGKEENKALLEKIEPDDLVH 288


>gi|85373055|ref|YP_457117.1| ATP-dependent protease ATP-binding subunit ClpX [Erythrobacter
           litoralis HTCC2594]
 gi|122545320|sp|Q2NDC1|CLPX_ERYLH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|84786138|gb|ABC62320.1| ATP-dependent Clp protease ATPase subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 423

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 62/310 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++            ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGSGKTLLAQTLARTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           ++   + +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVDKAQ-HGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPA------------- 310
              ++  ++T +ILFI  GAF                    HV+ P              
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPDKRKVGELLEKSEP 290

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L+      IL + ++ ++ QY +L + E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLHDLDVDALVTILQEPKNAIVKQYSKLFELEDVELTFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++ A+A+ A+   +     GAR L++++E +L D  F   DL +   VVIDA+ V    
Sbjct: 351 EALQAIAERAILRKT-----GARGLRSIVEGILLDTMFDLPDLDDISEVVIDADVVEGKK 405

Query: 424 GDF--PSETD 431
                 S  D
Sbjct: 406 EPIRVVSNDD 415



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 8/228 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           P EI + L+ Y+IGQ  AKR +++A+ N ++R +        EL   NILLVGPTG GKT
Sbjct: 67  PSEICATLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
            +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++   V     
Sbjct: 127 LLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVDKAQHGIVYIDEI 186

Query: 124 EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
           ++ +  AE   I   + G+       ++                 +      D +N    
Sbjct: 187 DKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFI 246

Query: 183 GGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+  +++   K              +K    L + E + L+
Sbjct: 247 CGGAFAGLDKIIADRLQKRSIGFGAHVADPDKRKVGELLEKSEPEDLL 294


>gi|288958757|ref|YP_003449098.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288911065|dbj|BAI72554.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 420

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 138/327 (42%), Gaps = 65/327 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLAHGTKHNDVELAKS-----NILLIGPTGCGKTLLAQTLARIIDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKIIAQRGKGTS 265

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                              H   P DL     +PE  GR PV   L  L+++    IL+ 
Sbjct: 266 IGFGADVRSADERATGEILHEVEPEDLLKFGLIPEFIGRLPVLATLSDLDEAALVEILSK 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L+F+ED++ A+A  A+   +     GAR L+++ME +L D 
Sbjct: 326 PKNALVKQYQRLFEMEDVHLEFSEDAMRAIAHKAIARKT-----GARGLRSIMEAILLDP 380

Query: 401 SFSASDLQE-KTVVIDAEYVRLHIGDF 426
            F    L   ++++++ E V       
Sbjct: 381 MFDLPGLTGIESILVNKEVVEGRAKPL 407



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPRDIHAVLDDYVIGQSYAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +  +    I   + G+       ++    +            +      D SN   
Sbjct: 185 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTSNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-YPELMRDESDRLI 228
           I GGA  G+  +     K    G    +R + ++     L   E + L+
Sbjct: 245 ICGGAFAGLDKIIAQRGKGTSIGFGADVRSADERATGEILHEVEPEDLL 293


>gi|326803638|ref|YP_004321456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651295|gb|AEA01478.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 418

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 144/347 (41%), Gaps = 58/347 (16%)

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D ++G+T       V          S++  + +  +     SN  + G    G   L++ 
Sbjct: 74  DYVIGQTDAKKALSVAVYNHYKRINSNQIKNQDEDNVELQKSNILLVGPTGSGKTYLAQT 133

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            ++++          S+ +    +  D  + L+ +       +   +  GI+++DE DKI
Sbjct: 134 LARILKVPFAIADATSLTEAG-YVGEDVENILLKLLQAADFDVDKAQQ-GIIYIDEIDKI 191

Query: 256 VARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASG 302
             +     I   VS EGVQ+ LL ++EG+  +            ++  I+T +ILFI  G
Sbjct: 192 ATKAENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQIDTTNILFIVGG 251

Query: 303 A-------------------------------------FHVSRPADLLPEIQGRFPVRVH 325
           A                                         +   L+PE  GR P+   
Sbjct: 252 AFDGIENIIKERTGHKVIGFQATKTTKAEKHDLMTQVIPEDLQKYGLIPEFIGRLPIIAS 311

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L  LN+ D   ILT+ ++ LI QYK+L+  + + L+FT+DS+ A+A  A++  +     G
Sbjct: 312 LDELNEEDLERILTEPKNALIKQYKQLLAMDNVQLEFTDDSLRAIAQKAIDRKT-----G 366

Query: 386 ARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           AR L++++E  + ++ +     ++   V+I  E V+ H      + D
Sbjct: 367 ARGLRSIIEESMLEVMYDIPSREDVSKVIITEEVVKDHASPELYDQD 413



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P EI   LD Y+IGQ DAK+A+++A+ N ++R          +   EL   NILLVGPT
Sbjct: 64  KPTEIRQILDDYVIGQTDAKKALSVAVYNHYKRINSNQIKNQDEDNVELQKSNILLVGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +++    
Sbjct: 124 GSGKTYLAQTLARILKVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVDKAQQGII 183

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A+      I   + G+       ++    + +                 D +
Sbjct: 184 YIDEIDKIATKAENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQIDTT 243

Query: 178 NF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           N   I GGA  GI N+ +     KV+G    K  +        +++ ++  +
Sbjct: 244 NILFIVGGAFDGIENIIKERTGHKVIGFQATKTTKAEKHDLMTQVIPEDLQK 295


>gi|261884679|ref|ZP_06008718.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 249

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 157/254 (61%), Gaps = 15/254 (5%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            N +P+EIV  LD Y+IGQ DAKR +A+ALRNR+RR +L   ++++++PKNIL++G TGV
Sbjct: 1   MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL   ++N+V++ +R++  +
Sbjct: 61  GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120

Query: 125 QASINAEERILDALVGKTATSNTREVFR----------KKLRDGEISDKEIDIEVADTSS 174
           + +   E++IL+ L+       + +  R           KL+ GE+    I++++  ++ 
Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDIDQST- 179

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               F+  G     +  + E F KV+G   KK  +    K   E ++ +  + +DM+++ 
Sbjct: 180 ----FEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKMKLAKNLDMESIK 235

Query: 235 RDSIQMVENYGIVF 248
            ++++  EN GI  
Sbjct: 236 TEALKRAENEGIYL 249


>gi|78043800|ref|YP_359189.1| ATP-dependent protease ATP-binding subunit ClpX [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995915|gb|ABB14814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 418

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 60/313 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++ +          ++ +    +  D  + L
Sbjct: 97  KIDDVELSKSNILMLGPTGSGKTLLAQTLARFLNVPFAIADATALTEAG-YVGEDVENIL 155

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 156 LKLIQNADYDIERAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 214

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       ++  I+T +ILFI  GAF                              
Sbjct: 215 VPPQGGRKHPHQEFIQIDTTNILFIVGGAFEGIEKIIQNRIGKKGLGFGAEIKPKREQNV 274

Query: 309 --------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DLL     PE  GR P+ V L +L++     ILT+ ++ LI QY++L + 
Sbjct: 275 GEILKHIMPEDLLKFGLIPEFVGRLPIIVTLDALDEDALVRILTEPKNALIKQYQKLFEL 334

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           +G+ L+F ED++ A+A  A+  N+     GAR L+ ++E V+ D+ +     ++    ++
Sbjct: 335 DGVTLEFEEDALRAIAQKAIKRNT-----GARGLRAILEEVMLDVMYEIPSRKDIIKCIV 389

Query: 415 DAEYVRLHIGDFP 427
             + +        
Sbjct: 390 TRDVIENKAKPIL 402



 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 11/238 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L     P+EI + LD+Y+IGQ++AK+ +A+A+ N ++R  L   + D EL   NIL++
Sbjct: 52  LSLEELPKPQEIKAYLDQYVIGQEEAKKVLAVAVYNHYKRINLGGKIDDVELSKSNILML 111

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + +
Sbjct: 112 GPTGSGKTLLAQTLARFLNVPFAIADATALTEAGYVGEDVENILLKLIQNADYDIERAEK 171

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 172 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 231

Query: 175 DISNFDIPGGASVGILN--LSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D +N     G +   +   +     K     G+  K K   +V +    +M ++  + 
Sbjct: 232 DTTNILFIVGGAFEGIEKIIQNRIGKKGLGFGAEIKPKREQNVGEILKHIMPEDLLKF 289


>gi|228982521|ref|ZP_04142780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
 gi|228776704|gb|EEM25012.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           thuringiensis Bt407]
          Length = 395

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 171/416 (41%), Gaps = 85/416 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI ++LDR +IGQ DAK+ + + + N ++R    + ++  +   NILL+G +G GK
Sbjct: 62  LRPHEIKNKLDRDVIGQDDAKKVLTVEIYNHYKRIY--SKVKTNIPKNNILLIGESGCGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +   ++++   P   V+ T  TE GY G++V+ I+  L+  A   +  +      E+ 
Sbjct: 120 THLVETISKIINIPMTIVDATTITETGYSGKDVDSILSSLIQEANGDISSA------EKG 173

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            +  +E  +D L  +T+ ++T++   +                              G  
Sbjct: 174 IVFIDE--VDKLAKRTSHTSTKDPQGE------------------------------GVQ 201

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
             +L + E  +  +   R+   R +V                   T++  +I  +     
Sbjct: 202 QALLKMIEGTNFTIEQNRQSIKRTTV-------------------TINTSNILFIFGGAF 242

Query: 247 VFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
             L E  DK   R + +   +            VE S  ++K   I+ + ++        
Sbjct: 243 DGLQEIVDK---RMNKHKKTIGFTNADT-----VEASKDNSKMSPISIEDLIQF------ 288

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE  GR P+ + L  L K D   IL      +I +Y +L K E   L FT++
Sbjct: 289 -----GLIPEFIGRIPLILTLNPLTKEDLMDILMKPNGAIIPEYIKLFKEEQKDLRFTDE 343

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +I+ +A  A++       +GAR ++ ++ + + D+ +    +      V    ++R
Sbjct: 344 AIEYIATEALHKG-----LGARGMKGIVAKKMSDLLYDMLINEDMMEFVATKTFIR 394


>gi|23014985|ref|ZP_00054777.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 422

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 67/331 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               K+L+ G  ++ E+++         SN  + G    G   L++  ++++        
Sbjct: 92  HNHYKRLQHGGKNNNEVEL-------AKSNILLIGPTGCGKTLLAQTLARILDVPFTMAD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
             ++ +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   V
Sbjct: 145 ATTLTEAG-YVGEDVENIILKLLQAAEYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF           
Sbjct: 203 SGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIIGSRG 262

Query: 305 -----------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRL 336
                                      P DL     +PE  GR PV   L+ L+      
Sbjct: 263 RGTSIGFGADVRGPDERRTGEILREVEPEDLLKFGLIPEFVGRLPVLATLEDLDVDALID 322

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL+  ++ L+ QY+ L + E   L F++D++ A+A+ A+   +     GAR L+++ME +
Sbjct: 323 ILSKPKNALVKQYQRLFEMEDTRLSFSDDALKAIAEKAIARKT-----GARGLRSIMETI 377

Query: 397 LEDISFSASDLQ-EKTVVIDAEYVRLHIGDF 426
           L D  F    L     VVI+ E V       
Sbjct: 378 LLDTMFDLPGLDAVDEVVINKEVVEGRAKPL 408



 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R Q     +   EL   NILL+GPTG G
Sbjct: 65  TPKDICQVLDDYVIGQGHAKKVLSVAVHNHYKRLQHGGKNNNEVELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     D
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQRGIVYID 184

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + +  +    I   + G+       ++    +            +      D +N  
Sbjct: 185 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 244

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-YPELMRDESDRLI 228
            I GGA  G+  +     +    G    +R   ++     L   E + L+
Sbjct: 245 FICGGAFSGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLL 294


>gi|254704396|ref|ZP_05166224.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           3 str. 686]
 gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
 gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 3 str. 686]
          Length = 424

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 70/371 (18%)

Query: 105 DLVDVAINIVRESRRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISD 162
           D++           R+ V     I A   +LD   +  K A S          +      
Sbjct: 48  DIIREENKSSMVKSREGVPTPQEIMA---VLDDYVIGQKDAKSVLSVAVHNHYKRLAHQS 104

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           K  DIE+A +     N  + G    G   L++  ++++          ++ +    +  D
Sbjct: 105 KNSDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGED 158

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + ++ +      +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 159 VENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217

Query: 281 GSSVST-----------KYGSINTDHILFIASGAF------------------------- 304
           G+  S            ++  ++T +ILFI  GAF                         
Sbjct: 218 GTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSV 277

Query: 305 ---------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                        P DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+
Sbjct: 278 DERRIGEVFKELEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQ 337

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
            L   E + L F +D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  
Sbjct: 338 RLFDMENVELVFHDDALRAIANKAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGV 392

Query: 410 KTVVIDAEYVR 420
           + VVI  + V 
Sbjct: 393 REVVISGDVVD 403



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAK  +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKSVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|117926915|ref|YP_867532.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetococcus sp.
           MC-1]
 gi|166214782|sp|A0LDT3|CLPX_MAGSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117610671|gb|ABK46126.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Magnetococcus
           sp. MC-1]
          Length = 420

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 68/348 (19%)

Query: 136 DALVGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
           D ++G+     T  V      +  E +D   D+E++ +     N  + G    G   L++
Sbjct: 74  DYVIGQDNAKRTLAVAVYNHYKRLESNDTSADVEISKS-----NVLMIGPTGSGKTLLAQ 128

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
             ++++          ++ +    +  D  + ++ +     + ++  +  GIVF+DE DK
Sbjct: 129 TLARLLDVPFTITDATTLTEAG-YVGEDVENIILRLLQAADNDVEKAQ-RGIVFIDEIDK 186

Query: 255 IVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIAS 301
           I  +     I   VS EGVQ+ LL ++EG+  S            +Y  ++T +IL I  
Sbjct: 187 ISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQVDTTNILVICG 246

Query: 302 GAFH------------------------------------VSRPADL-----LPEIQGRF 320
           GAF+                                       P DL     +PE  GR 
Sbjct: 247 GAFNGLEKVIEKRSSKHHGIGFGATVRKNSKEESVNVLLKELEPEDLLAFGLIPEFVGRL 306

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L+K     ILT+ ++ L+ QY++L++ E + L FT+ +++ALA  A+   + 
Sbjct: 307 PVVATLEELSKEALVRILTEPKNALVKQYQKLLEMENVKLTFTDGALEALAQRAIERKT- 365

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
               GAR L+ ++E  L DI F     Q  + VVI+ E V   I    
Sbjct: 366 ----GARGLRALLESTLLDIMFEIPSKQGVREVVINREVVEKQIEPLL 409



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI S LD Y+IGQ +AKR +A+A+ N ++R +      D E+   N+L++GPTG GK
Sbjct: 64  TPMEIKSTLDDYVIGQDNAKRTLAVAVYNHYKRLESNDTSADVEISKSNVLMIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE II  L+  A N V +++R     DE
Sbjct: 124 TLLAQTLARLLDVPFTITDATTLTEAGYVGEDVENIILRLLQAADNDVEKAQRGIVFIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD- 180
           + + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 184 IDKISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQVDTTNILV 243

Query: 181 IPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRD 222
           I GGA  G+  + E  S             + S ++    L+++
Sbjct: 244 ICGGAFNGLEKVIEKRSSKHHGIGFGATVRKNSKEESVNVLLKE 287


>gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
 gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodobacteraceae bacterium KLH11]
          Length = 421

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 113 SNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-YVGEDVENIILKLLQASEY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S         
Sbjct: 172 NVERAQ-RGIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEIFKELEP 290

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L++     ILT  ++ L+ QY+ L + E   L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVLATLEDLDEDALVTILTSPKNALVKQYQRLFELEDAELAFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           D++ A+A  A+   +     GAR L++++E +L D  F    ++  T VV++ E V
Sbjct: 351 DALKAIAKKAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTEVVVNEEAV 401



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDIELAKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R     D
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYID 184

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV +    +    I   + G+       ++    +            +      D +N  
Sbjct: 185 EVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 244

Query: 181 IPGGASVGILNL---SELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRL 227
              G +   L+           MG G   +      V + + EL  ++  + 
Sbjct: 245 FICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEIFKELEPEDLLKF 296


>gi|322694066|gb|EFY85906.1| putative MCX1 protein [Metarhizium acridum CQMa 102]
          Length = 575

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 146/378 (38%), Gaps = 50/378 (13%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTGVGKT I   L++    PF   +    T+ GY+G++VE  I  L+  A
Sbjct: 193 IDKSNLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLLIEA 252

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              ++ +    V     ++  +++               V +  L+  E +   I+++  
Sbjct: 253 NYDIKATEYGIV----VLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINVKDN 308

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +S           +     +  +                                 +D 
Sbjct: 309 RSSRSTPPITTNYSSGGSSSSAPQAVPPGGK--------------------------VDQ 342

Query: 231 DTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            T+   +I  V     V LD+    ++     G G  +           ++  S     Y
Sbjct: 343 YTIDTSNILFVFCGAFVGLDKAVLQRVARPSMGFGGELRGRSTLSGSKHILPPSV----Y 398

Query: 289 GSI-NTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
             I + D +   +     ++ PADL     +PE+ GR      L  L+ SD   +LT+  
Sbjct: 399 AHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNICALSPLSTSDLLRVLTEPR 458

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L+ QY  L +T    L FTE ++ A+A+ A  + +     GAR L+  MERVL +  F
Sbjct: 459 NSLVAQYTALFETYPSRLHFTEKALYAIAERAAAIGT-----GARGLKMEMERVLAEPMF 513

Query: 403 SASDLQEKTVVIDAEYVR 420
            A       V+I  + V+
Sbjct: 514 DAP---MPYVLITEDCVK 528


>gi|87201066|ref|YP_498323.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123488135|sp|Q2G3T4|CLPX_NOVAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|87136747|gb|ABD27489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 418

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K            ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGSGKTLLAQTLAKTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  + +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVEKAQ-HGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPA------------- 310
              ++  ++T +ILFI  GAF                    HV+ P              
Sbjct: 231 PQQEFLQVDTTNILFICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRKVGELLQKAEP 290

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  L+      IL + ++ L+ QY +L + E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLNDLDIEALVKILKEPKNALVKQYAKLFELEDVTLTFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           D+++A+A  A+   +     GAR L++++E +L D  F    +     +V+D + V    
Sbjct: 351 DALEAIAKKAIERKT-----GARGLRSIVEGLLLDTMFDVPTESDIAEIVVDKDVVEGRK 405

Query: 424 GDF 426
              
Sbjct: 406 EPV 408



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I   L+ Y+IGQ  AKR +++A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 66  TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGDVELSKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++   V    
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQHGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +K    L + E + L+
Sbjct: 246 ICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRKVGELLQKAEPEDLL 294


>gi|271968523|ref|YP_003342719.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
 gi|270511698|gb|ACZ89976.1| ATP-dependent protease ATP-binding subunit [Streptosporangium
           roseum DSM 43021]
          Length = 426

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILLLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 171 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI  GAF          V R                         P
Sbjct: 230 PHQEFIQIDTTNVLFICGGAFAGLEKIIESRVGRKGIGFNAIIHSKEDVDSSDIFGDVMP 289

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR PV   + +L++     ILT+  + L+ QY+ L + + + L+FT+
Sbjct: 290 EDLLKFGMIPEFVGRLPVITSVHNLDRDALIQILTEPRNALVKQYRRLFELDNVELEFTD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ ++E VL  + +     Q+   VVI  E V  H+
Sbjct: 350 DALEAIADQAILRGT-----GARGLRAILEEVLLSVMYEVPSRQDVARVVITRESVLEHV 404

Query: 424 GDFPSETD 431
                  D
Sbjct: 405 NPTLVPRD 412



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 9/196 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
            PREI   LD Y+IGQ  AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG 
Sbjct: 63  KPREIYEFLDAYVIGQDQAKKALSVAVYNHYKRVQSGERGRDDGIELSKSNILLLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++       
Sbjct: 123 GKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178
           DEV + A  +    I   + G+       ++                        D +N 
Sbjct: 183 DEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNV 242

Query: 179 FDIPGGASVGILNLSE 194
             I GGA  G+  + E
Sbjct: 243 LFICGGAFAGLEKIIE 258


>gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella
           bacilliformis KC583]
 gi|166214756|sp|A1USA8|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           bacilliformis KC583]
          Length = 424

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                  H   P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTSIGFSATIKAPDERRVGEIFHDLEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+   L+ L+      IL+  ++ L+ QY+ L + E + L F E
Sbjct: 292 EDLVKFGLIPEFIGRLPIIATLEDLDIDALVRILSQPKNALVKQYQHLFEMENVELTFHE 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D++ A+A+ A+   +     GAR L+++ME++L D  F    L+  + VVI ++ V   
Sbjct: 352 DALRAIANKAIERKT-----GARGLRSIMEKILLDTMFELPALEGVQKVVISSDVVEGK 405



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI+  LD Y+IGQ+ AKR +++A+ N ++R    +     EL   NILLVGPTG GK
Sbjct: 67  TPQEIIEVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNNAIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATIKAPDERRVGEIFHDLEPEDLVKF 297


>gi|222528716|ref|YP_002572598.1| ATP-dependent protease ATP-binding subunit ClpX
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254763830|sp|B9MQ33|CLPX_ANATD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222455563|gb|ACM59825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 433

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHNTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|320586123|gb|EFW98802.1| ATPase AAA-2 [Grosmannia clavigera kw1407]
          Length = 586

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 143/382 (37%), Gaps = 54/382 (14%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTGVGKT I   L+++   PF   + + FT+ GYVG++VE  I  L+  A
Sbjct: 197 IDKSNLLLIGPTGVGKTYILETLSKVLNIPFAICDCSSFTQAGYVGKDVETCIERLLIEA 256

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               R +    V     ++  ++I               V +  L+  E +   + I+  
Sbjct: 257 NYDTRAAEFGIV----ILDEFDKIARKEEANNRDIGGEGVQQALLKLVEGTKVTVSIKDN 312

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +S   S      G+    L                                 +   I+ 
Sbjct: 313 HSSRSASPITSTYGSPNASLPPQGS---------------------------SASGKIEQ 345

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV------ 284
            T+    I  V +   V LD+   I+ R +   +G   E        +    +V      
Sbjct: 346 YTIDTSRILFVFSGAFVGLDK--HIIRRVAKPSLGFGSELRSTKDSTIAGSKAVLPAKMY 403

Query: 285 -STKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
               +   + D           +  PADL     +PE+ GR      L  L+  +   IL
Sbjct: 404 AHLPHQPAD-DDPNGANFTPLDLVSPADLQAFGFIPELIGRLHNICALTPLSVDELYRIL 462

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+   +LI QY  L +T    L FT+ ++ A+A+ A  +     D GAR L+  +ERVL 
Sbjct: 463 TEPRHSLIAQYTALFETYPSRLYFTQRALHAIAERASKV-----DTGARGLKMELERVLA 517

Query: 399 DISFSASDLQEKTVVIDAEYVR 420
           +  F A       V+I    V 
Sbjct: 518 EPMFDAP---MAYVLITEGCVN 536



 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 31/259 (11%)

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           R L +L     I  E  K T    V  + +++   L     + +   +    R      A
Sbjct: 86  RDLKKLLDTYVIGQERAKRTTTSTVFNHHQRMHHKLRQEETDRLTREKLQRQR-----FA 140

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV-------------ADTSSDIS 177
            +R L  +  ++  SN      ++    E   +    E               D   D S
Sbjct: 141 RDRDLHDIHRESHNSNDAYELDERFELPEGGYRNYKPEPVGGLHIPEGPTRAEDVRIDKS 200

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVHR 235
           N  + G   VG   + E  SKV+       I  ++  C          + ++  ++ +  
Sbjct: 201 NLLLIGPTGVGKTYILETLSKVLN------IPFAICDCSSFTQAGYVGKDVETCIERLLI 254

Query: 236 DS--IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
           ++        +GIV LDEFDKI  ++  N   +  EGVQ+ LL LVEG+ V+      ++
Sbjct: 255 EANYDTRAAEFGIVILDEFDKIARKEEANNRDIGGEGVQQALLKLVEGTKVTVSIKDNHS 314

Query: 294 DH---ILFIASGAFHVSRP 309
                 +    G+ + S P
Sbjct: 315 SRSASPITSTYGSPNASLP 333



 Score = 51.5 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
            F PR++   LD Y+IGQ+ AKR     + N  +R      LR E
Sbjct: 82  QFYPRDLKKLLDTYVIGQERAKRTTTSTVFNHHQRMHH--KLRQE 124


>gi|313682964|ref|YP_004060702.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155824|gb|ADR34502.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum
           kujiense DSM 16994]
          Length = 410

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 127/314 (40%), Gaps = 60/314 (19%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
                ++ E     S++      G    G   +++  ++V+          S+ +    +
Sbjct: 94  FKHTVVEDETEIAKSNVLLI---GPTGSGKTLMAQTIARVLNVPIAIADATSLTEAG-YV 149

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L  +       ++  +  GIVF+DE DKI        I   VS EGVQ+ LL 
Sbjct: 150 GEDVENILTKLLQAADGDVERAQQ-GIVFIDEIDKISRMSENRSITRDVSGEGVQQALLK 208

Query: 278 LVEGSSVSTK-----------YGSINTDHILFIASGAF---------------------- 304
           ++EG+ V+             +  I+T  ILFI  GAF                      
Sbjct: 209 IIEGAVVNIPPKGGRKHPNQDFIQIDTSGILFICGGAFDGLGQILERKKGSNVMGFGHDK 268

Query: 305 ----------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                         P DL     +PE+ GR P+   L  +++ +   ILT+ +++L+ QY
Sbjct: 269 RSSSDIDDSFENVEPDDLVSYGLIPELIGRLPIIASLNKISEEEMVRILTEPKNSLVKQY 328

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
            +L   + + L F +++++A+A  A+   +     GAR L+ +ME  + D  +   +   
Sbjct: 329 TKLFAIDDVELTFDKEALNAIAAKALARKT-----GARGLRAIMEETMGDTMYELPEYSG 383

Query: 410 KTVVIDAEYVRLHI 423
             V+I  E V  ++
Sbjct: 384 YEVLITKEVVEDNV 397



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGV 64
            +P+E+ + L +YIIGQ  A++ +++A+ N ++R       +   E+   N+LL+GPTG 
Sbjct: 59  LTPKELNTFLGQYIIGQDRARKLLSVAVYNHYKRIFKHTVVEDETEIAKSNVLLIGPTGS 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV-- 122
           GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A   V  +++  V  
Sbjct: 119 GKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAADGDVERAQQGIVFI 178

Query: 123 --REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              ++ S  +E R I   + G+       ++    + +                 D S  
Sbjct: 179 DEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQDFIQIDTSGI 238

Query: 180 DIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
               G     +G +   +  S VMG G  K+    +   +  +  D
Sbjct: 239 LFICGGAFDGLGQILERKKGSNVMGFGHDKRSSSDIDDSFENVEPD 284


>gi|312876448|ref|ZP_07736432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796806|gb|EFR13151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 432

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 110 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 228 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 287

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 288 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 348 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 402

Query: 424 GDFP 427
               
Sbjct: 403 KPIV 406



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 62  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 122 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 182 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 241

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 242 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 298

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 299 FIGRVPIIVTLDALDK 314


>gi|254670021|emb|CBA04788.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria
           meningitidis alpha153]
          Length = 376

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 154/396 (38%), Gaps = 94/396 (23%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A    EL   NILL+GPTG GK
Sbjct: 66  TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR    PF+  + T  TE GYVG +VEQII  L+      V +++R  V    
Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQGG--------- 227

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                                 +                   + + ++ D+  ++   G 
Sbjct: 228 ---------------------RKHP-----------------NQEFINVDTTNILFICGG 249

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
            F      I  R    GIG               G+SV +K  + +   +  I       
Sbjct: 250 AFAGLEKVIRQRTEKGGIGF--------------GASVHSKDENADITKLFGIVE--PED 293

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR PV   L+ L++     ILT+ +         ++ +  I       S
Sbjct: 294 LIKFGLIPELIGRLPVIATLEELDEDALINILTEPK---------MLWSSSIK----PCS 340

Query: 367 IDALA----DVAV----NLNSTVGDIGARRLQTVME 394
           +  ++      A      +       GAR L +++E
Sbjct: 341 VWKMSSWNLKKAHCVPSRVRQWERKTGARGLGSIVE 376


>gi|312622970|ref|YP_004024583.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203437|gb|ADQ46764.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 433

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|295399414|ref|ZP_06809396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110027|ref|YP_003988343.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. Y4.1MC1]
 gi|294978880|gb|EFG54476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215128|gb|ADP73732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y4.1MC1]
          Length = 420

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 59/305 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIDDVELSKSNILMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSRP------------------------- 309
                       ++  I+T +ILFI  GAF    P                         
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGKKVIGFGADVQQSEVDEK 278

Query: 310 -------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                          L+PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +
Sbjct: 279 NLLSKVLPEDLLKFGLIPEFIGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L+F ED++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  +I 
Sbjct: 339 GVELEFEEDALREIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIIT 393

Query: 416 AEYVR 420
            E VR
Sbjct: 394 VETVR 398



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 243 ICGGAFDGIE 252


>gi|317123028|ref|YP_004103031.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter marianensis DSM 12885]
 gi|315593008|gb|ADU52304.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermaerobacter marianensis DSM 12885]
          Length = 419

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 129/312 (41%), Gaps = 60/312 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D     SN  + G    G   L++  +K++          S+ +    +  D  + L+
Sbjct: 102 IDDVELQKSNILMIGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENILL 160

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 161 KLIQAADYDIERAE-RGIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASV 219

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  I+T +ILFI  GAF                               
Sbjct: 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFEGLDKIISSRIGRRVLGFGAEVRSKQETNVG 279

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV   L +L++     ILT+ ++ L+ QY +L+  +
Sbjct: 280 EILRHIMPEDLLKFGLIPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYHKLLALD 339

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVID 415
            + L+F  +++ A+A  A+  N+     GAR L+ ++E ++ D+ +      +   VV+ 
Sbjct: 340 NVELEFEPEALRAIAQEALKRNT-----GARGLRAIVEELMLDLMYELPGRDDVARVVVT 394

Query: 416 AEYVRLHIGDFP 427
            E VR       
Sbjct: 395 EETVRQRREPIV 406



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           ++L     P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NIL++
Sbjct: 56  VELKDLPKPAEIKAFLDQYVIGQERAKKILAVAVYNHYKRIHLGGRIDDVELQKSNILMI 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 116 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAER 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +                   
Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   L+
Sbjct: 236 DTTNILFICGGAFEGLD 252


>gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus
           S19]
 gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
 gi|238689370|sp|B2S5W0|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19]
 gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC
           8038]
          Length = 424

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTQAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  T+ GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTQAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|167464585|ref|ZP_02329674.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322383233|ref|ZP_08057044.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152502|gb|EFX45288.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 419

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 59/316 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  +K++          S+ +    +  D  + L
Sbjct: 101 KLEDVELQKSNIVLVGPTGSGKTLLAQTMAKILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAE-RGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEQIIKRRIGKKVIGFSTDGAKLDLKPG 278

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
               +  P DL     +PE  GR PV   L+ L+++    ILT+ ++ L+ QY++L++ +
Sbjct: 279 EYLSMVLPEDLLKFGLIPEFVGRLPVVSTLEPLDEAALVRILTEPKNALVKQYQKLLEMD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
            + L+F +++++A++  A+  N+     GAR L+ ++E ++ D+ F      + T   I 
Sbjct: 339 NVKLEFEKEALEAISQEAIKRNT-----GARGLRAIIESIMLDVMFDVPTRTDVTECTIT 393

Query: 416 AEYVRLHIGDFPSETD 431
            + V   +    +  +
Sbjct: 394 QDVVEKKLAPVLTTKE 409



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI S LD+Y+IGQ  AK+++++A+ N ++R    + L D EL   NI+LVGPTG GK
Sbjct: 63  KPKEICSILDQYVIGQDQAKKSLSVAVYNHYKRINSQSKLEDVELQKSNIVLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|46116944|ref|XP_384490.1| hypothetical protein FG04314.1 [Gibberella zeae PH-1]
          Length = 604

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 145/380 (38%), Gaps = 54/380 (14%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+  A
Sbjct: 222 IDKSNLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLLIEA 281

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              ++ +    V     ++  ++I               V +  L+  E +   I+++  
Sbjct: 282 NYDIKATEYGIV----VLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVTINVKDN 337

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +S           AS          S           +                  +D 
Sbjct: 338 RSSRSTPPITTNYNASGS--------SSSTPQANPPGGK------------------VDQ 371

Query: 231 DTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGVSREGV---QRDLLPLVEGSSVS 285
            T+   +I  V     V LD+    +I     G G  +         +  LP    + + 
Sbjct: 372 YTIDTKNILFVFCGAFVGLDKAVLRRIARPTMGFGGELRGRSSMSGNKQTLPAETYTHLP 431

Query: 286 TKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 + +     +     ++ PADL     +PE+ GR      L  L+K D   ILT+
Sbjct: 432 ------HHNPQSASSFTPLDLTTPADLQSFGFIPELIGRLHNICALSPLSKEDLFRILTE 485

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             ++L+ QY  L +T    L FTE S+ A+A+ A    +     GAR L+  MERVL + 
Sbjct: 486 PRNSLVAQYTALFETYPSRLFFTEKSLYAIAERAAASET-----GARGLKMEMERVLAEP 540

Query: 401 SFSASDLQEKTVVIDAEYVR 420
            F A       V+I    V+
Sbjct: 541 MFDAP---MPYVLITEACVK 557



 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 109/322 (33%), Gaps = 55/322 (17%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVGP 61
            F PR++   +D Y++GQ  AK+ +   + N +    RR Q   + R+            
Sbjct: 89  QFYPRDLKKRVDDYVVGQDRAKKTICATIFNHYQNLRRRHQHDHEDRNRRDK-------- 140

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                  + +R AR                            R+L      +     +  
Sbjct: 141 ------VMRQRFAR---------------------------DRELHQKRREMHPVEGQRA 167

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV---ADTSSDISN 178
               +   A + I D   G + +        +   D  +    +  ++        D SN
Sbjct: 168 HSSFSERYAADAIEDEFPGHSESVRGLHDSHE-FDDDPMDHLYVTEDITVPEHVKIDKSN 226

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRD 236
             + G   VG   + E  SK +          S  +        E+  +RL+        
Sbjct: 227 LLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLLIEANYDIK 286

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           + +    YGIV LDEFDKI  R++  G  V  EGVQ+ LL LVEG+ V+       +   
Sbjct: 287 ATE----YGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVTINVKDNRSSRS 342

Query: 297 LFIASGAFHVSRPADLLPEIQG 318
               +  ++ S  +   P+   
Sbjct: 343 TPPITTNYNASGSSSSTPQANP 364


>gi|302871326|ref|YP_003839962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574185|gb|ADL41976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 433

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|316933822|ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
 gi|315601536|gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Rhodopseudomonas palustris DX-1]
          Length = 424

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 65/321 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLNHQTKHNDVELAKS-----NILLIGPTGSGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISGRGRSTS 265

Query: 305 -----HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V  P D                   L+PE  GR PV   L+ L+++  + ILTD
Sbjct: 266 IGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLKKILTD 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E I L F ++++ A+A  A+   +     GAR L++++E +L + 
Sbjct: 326 PKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKT-----GARGLRSILESILLET 380

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    L+  + VVI  E V 
Sbjct: 381 MFDLPGLEGVEEVVISREVVE 401



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  +        
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG 226


>gi|308070424|ref|YP_003872029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa E681]
 gi|305859703|gb|ADM71491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa E681]
          Length = 418

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 150/352 (42%), Gaps = 66/352 (18%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A  +         +     +K  D+E+  +     N  + G    G   
Sbjct: 70  ILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKS-----NILMLGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAF---------------------------------HVSRPADL-----LPEIQGRF 320
           I  GAF                                  +  P DL     +PE  GR 
Sbjct: 243 ICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLIPEFVGRL 302

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L+++    IL++ ++ L  QY++L++ + + L+F +D+++A+A  A+  N+ 
Sbjct: 303 PVISTLEPLDENTLVRILSEPKNALTKQYQKLLELDNVQLEFKQDALEAIAREAIKRNT- 361

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               GAR L+ ++E ++ D+ +     ++  T VI+ + V+  I      TD
Sbjct: 362 ----GARGLRAIIEGIMLDVMYEVPSREDVTTCVINEQVVKDKIAPELGGTD 409



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 117/289 (40%), Gaps = 11/289 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NIL++GPTG GK
Sbjct: 63  KPMQIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +   L        +     KK I  +      +L   E   ++  + + +  +   
Sbjct: 243 ICGGAFDGLE-----QMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLIPE 297

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
               +  +   + +        +   +  + +    L+E  +V  ++  
Sbjct: 298 FVGRLPVISTLEPLDENTLVRILSEPKNALTKQYQKLLELDNVQLEFKQ 346


>gi|325186763|emb|CCA21310.1| ATPdependent Clp protease ATPbinding subunit clpX putative [Albugo
           laibachii Nc14]
          Length = 556

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 182/465 (39%), Gaps = 123/465 (26%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR +   LD Y+IGQ+  K+ +++A+ N ++R  L   +R +             V K
Sbjct: 124 LTPRMMCQGLDDYVIGQESVKKVLSVAVHNHYKRLHLLDLMRAQKEAA---------VAK 174

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
             + +    L   P    +++                R L+                   
Sbjct: 175 ATMLKSRIELNDLPEGLSDMS----------------RRLL------------------- 199

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                E++L  L       N +      +   E      D+E+  T     N  + G   
Sbjct: 200 ----LEQVLSGL-------NEKSWSESGVTVTENLKILEDVELDKT-----NVLLLGPTG 243

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G   L++  ++++           + +    +  D    L  +      +I+     GI
Sbjct: 244 SGKTLLAKTLARLVKVPIVIADATCLTQAG-YVGEDVESVLFKLYQASGYNIE-ATQRGI 301

Query: 247 VFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINT 293
           V++DE DKI  +++   I   VS EGVQ+ LL ++EG+ V+               +I+T
Sbjct: 302 VYIDEIDKISRKNATTNIARDVSGEGVQQALLKMLEGNLVNIPEKGGRKNPRDDCVTIDT 361

Query: 294 DHILFIASGAF---------------------------HVSR----------PADLL--- 313
            +ILFI  GAF                           H+ +          P DL+   
Sbjct: 362 SNILFICGGAFAGLEKTIAARTCRSSIGFGAIMPNTDLHMQKEAAACMENVEPEDLIAFG 421

Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE  GR PV V  + L K +   IL++ +++++ Q+K L   +G+    T+ +++A+A
Sbjct: 422 LIPEFIGRLPVIVSTRGLQKQEMVRILSEPKNSIVRQFKALFALQGVEFVVTKGALEAVA 481

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
           ++A+  N+     GAR L++++ER L D+ F   DL     V +D
Sbjct: 482 EIALEKNT-----GARGLRSILERTLVDVMFDLPDLPSVRAVHVD 521


>gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus]
          Length = 423

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 148/371 (39%), Gaps = 71/371 (19%)

Query: 105 DLVDVAINIVRESRRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISD 162
           D++           R+ V  +  I A   +LD   +  K A            +      
Sbjct: 48  DIIREENKSSMVKSREGVPTRRQIMA---VLDDYVIGQKDAKRVLSVAVHNHYKRLAHQS 104

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           K  DIE+A +     N  + G    G   L++  ++++          ++ +    +  D
Sbjct: 105 KNSDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGED 158

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + ++ +      +++      IV++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 159 VENIILKLLQAADYNVERAR--SIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 216

Query: 281 GSSVST-----------KYGSINTDHILFIASGAF------------------------- 304
           G+  S            ++  ++T +ILFI  GAF                         
Sbjct: 217 GTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSV 276

Query: 305 ---------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                        P DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+
Sbjct: 277 DERRIGEVFKELEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQ 336

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
            L   E + L F +D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  
Sbjct: 337 RLFDMENVELVFHDDALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGV 391

Query: 410 KTVVIDAEYVR 420
           + VVI  + V 
Sbjct: 392 REVVISGDVVD 402



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           + R+I++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TRRQIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----RDEV 122
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  +R     DEV
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERARSIVYIDEV 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D +N    
Sbjct: 187 DKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFI 246

Query: 183 GGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 CGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 296


>gi|332375668|gb|AEE62975.1| unknown [Dendroctonus ponderosae]
          Length = 582

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 159/476 (33%), Gaps = 128/476 (26%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGP----TGVG 65
           I   L+++++GQ+ AK+ +++A+ N ++R     P  L +     +++  GP    T  G
Sbjct: 144 IYEYLNKHVVGQEYAKKVLSVAVYNHYKRIYNNTPNQLGNSRQDMSVMEQGPHQNMTHRG 203

Query: 66  ------------------KT------------------------------------AISR 71
                             KT                                     +++
Sbjct: 204 MGQAPIGLSFSPTEPPYTKTTSQSAIGSDILDRTTHELKLEKSNILLLGPTGSGKTLLAQ 263

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQA 126
            +A+    PF   + T  T+ GYVG ++E +I  L+  A   V +++      DEV +  
Sbjct: 264 TIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQDAGYSVEKAQIGIVFLDEVDKIG 323

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           ++    ++ D           ++   K L    ++  E        S      +     +
Sbjct: 324 AVPGIHQLRDV-----GGEGVQQGMLKMLEGTIVNVPE------RNSPRKLRGETIQVDT 372

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
             IL ++      +    +++   +       +   +  R +  +     S Q  E   +
Sbjct: 373 TNILFVASGAYNGLERLIQRRNNENYLGFGAPVTAGQGRRAVAQEATLHSSTQSAEEENL 432

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
                  ++ ARD                            +G I      F     FH 
Sbjct: 433 EKDQALRQVQARDL-------------------------IDFGMIPEFVGRFPVLVPFH- 466

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                                SL++S    ILT+  + LI QY+ L+  +   L FT D+
Sbjct: 467 ---------------------SLDQSMLVRILTEPNNALIPQYQRLLAMDQCQLSFTSDA 505

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++A+A  A++  +     GAR L+ +ME +L +  F         V +  E VR  
Sbjct: 506 LNAIASQAMDRKT-----GARGLRAIMETLLLEPMFEVPGAGISEVHVTDECVRGK 556


>gi|319408365|emb|CBI82018.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           schoenbuchensis R1]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                  H   P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERRVGEIFHDLEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+   L+ L+ +    IL+  ++ L+ QYK L + E + L F E
Sbjct: 292 EDLVKFGLIPEFIGRLPIIATLEDLDINALVQILSQPKNALVKQYKRLFEMENVELTFHE 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D++  +A+ A+   +     GAR L+++ME++L D  F    L+  + VVI ++ V   
Sbjct: 352 DALRVIANKAIERKT-----GARGLRSIMEKILLDTMFELPTLEGVQKVVISSDVVEGK 405



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEILTVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNGDIELSKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATVKAPDERRVGEIFHDLEPEDLVKF 297


>gi|254719173|ref|ZP_05180984.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           83/13]
 gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
 gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           83/13]
 gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp.
           NF 2653]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVVRKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC
           23445]
 gi|38257637|sp|Q8G0I5|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189082486|sp|B0CGR0|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           1330]
 gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis
           ATCC 23445]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
 gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EuI1c]
          Length = 430

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 60/310 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T ++LFI  GAF          + + +                        
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDAADVFGDVMP 293

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR PV   +++L++     ILT+ ++ L+ QYK L + + + LDFT 
Sbjct: 294 EDLLKYGMIPEFIGRLPVLTSVQNLDREALIRILTEPKNALVRQYKRLFELDNVDLDFTS 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +     ++   VV+  E V  H+
Sbjct: 354 DALEAIADQAILRGT-----GARGLRAIMEEVLMSVMYDIPSRKDVARVVVTREVVLEHV 408

Query: 424 GDFPSETDMY 433
                  D+ 
Sbjct: 409 NPTLVPRDIS 418



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPKNILLVG 60
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q         A    EL   NILL+G
Sbjct: 63  KPREIYEFLDGYVVGQETAKKTLSVAVYNHYKRIQAGGSAPSDSAKADVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++                        D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFIVGGAFAGLD 258


>gi|301330695|ref|ZP_07223297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
 gi|300843356|gb|EFK71116.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 143/374 (38%), Gaps = 74/374 (19%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222

Query: 287 -----------KYGSINTDHILFIASGAFH------------------------------ 305
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIFHRVETGSGIGFGATVKAKSDKAS 282

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   L  L++     IL + ++ L  QY+ L  
Sbjct: 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++DA+A  A+   +     GAR L++++E  L D  +    +++ + VV
Sbjct: 343 LEGVDLEFRDEALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVV 397

Query: 414 IDAEYVRLHIGDFP 427
           ID   +        
Sbjct: 398 IDESVIDGQSKPLL 411



 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ 225


>gi|301049645|ref|ZP_07196594.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
 gi|300298582|gb|EFJ54967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 143/374 (38%), Gaps = 74/374 (19%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222

Query: 287 -----------KYGSINTDHILFIASGAFH------------------------------ 305
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISYRVETGSGIGFGATVKAKSDKAS 282

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   L  L++     IL + ++ L  QY+ L  
Sbjct: 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++DA+A  A+   +     GAR L++++E  L D  +    +++ + VV
Sbjct: 343 LEGVDLEFRDEALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVV 397

Query: 414 IDAEYVRLHIGDFP 427
           ID   +        
Sbjct: 398 IDESVIDGQSKPLL 411



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R     DE
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D S    
Sbjct: 186 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILF 245

Query: 182 PGGASVGILNLSELF----SKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+    +       +G G   K +         L + E + LI
Sbjct: 246 ICGGAFAGLDKVISYRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296


>gi|302900533|ref|XP_003048281.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729214|gb|EEU42568.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 603

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 145/377 (38%), Gaps = 48/377 (12%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G++VE  I  L+  A
Sbjct: 222 IDKSNLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLLIEA 281

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              ++ +    V     ++  ++I               V +  L+  E +   I+++  
Sbjct: 282 NYDIKATEHGIV----VLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVTINVKDN 337

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +S           AS      S         G+                       +D 
Sbjct: 338 RSSRSTPPITTNYNASG---PSSSAPQAAPPGGK-----------------------VDQ 371

Query: 231 DTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            T+   +I  V     V LD+    ++     G G  +           ++   + +   
Sbjct: 372 YTIDTTNILFVFCGAFVGLDKAVLRRVARPSMGFGGELRGRSTMSGSKQVLPAETYT--- 428

Query: 289 GSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
              + +           ++ PADL     +PE+ GR      L  L+K D   ILT+ ++
Sbjct: 429 HLPHHNPQSAPTFTPLDLTTPADLQSFGFIPELIGRLHNICALSPLSKDDLFRILTEPKN 488

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L+ QY  L +T    L FTE ++ A+A+ A    +     GAR L+  MERVL +  F 
Sbjct: 489 SLVAQYTALFETYPSRLFFTEKALYAIAERAAASET-----GARGLKMEMERVLAEPMFD 543

Query: 404 ASDLQEKTVVIDAEYVR 420
           A       V+I    V+
Sbjct: 544 AP---MPYVLITEASVK 557



 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 107/320 (33%), Gaps = 55/320 (17%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            F PR++   +D Y++GQ  AK+ +   + N ++  +       E   +   ++      
Sbjct: 89  QFYPRDLKKRVDDYVVGQDRAKKTICATIFNHYQNLRRRHQHEHEDRNRRDKMMRQ---- 144

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
                 R AR                                D  ++  R        ++
Sbjct: 145 ------RFAR--------------------------------DRELHQKRREMHPVEGQR 166

Query: 126 ASINA-EERILDALVG--KTATSNTREVFRKKLRDGEISDKEIDIE----VADTSSDISN 178
                 E R  DAL         + R +      D +  D     E          D SN
Sbjct: 167 VHGPMPERRDTDALQDEFPGHNESVRGLHDNHEYDEDPMDHLYAAEDLSIPEHVKIDKSN 226

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRD 236
             + G   VG   + E  SK +          S  +        E+  +RL+        
Sbjct: 227 LLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLLIEANYDIK 286

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           + +    +GIV LDEFDKI  R++  G  V  EGVQ+ LL LVEG+ V+       +   
Sbjct: 287 ATE----HGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVTINVKDNRSSRS 342

Query: 297 LFIASGAFHVSRPADLLPEI 316
               +  ++ S P+   P+ 
Sbjct: 343 TPPITTNYNASGPSSSAPQA 362


>gi|118443245|ref|YP_878862.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium novyi
           NT]
 gi|229889851|sp|A0Q2L0|CLPX_CLONN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118133701|gb|ABK60745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           novyi NT]
          Length = 431

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 60/319 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++V D     SN  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 98  DVDVDDVELQKSNILLLGPTGSGKTLLAQTLARLLNVPFAMADATTLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQNADYDIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  INT +ILFI  GAF                            
Sbjct: 216 ASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSTVQSKEEK 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                   S P DLL     PE  GR P+ V L+SL+ S    IL + ++ L+ QYK+L+
Sbjct: 276 DIGELLKESVPEDLLKFGLIPEFIGRLPIMVTLQSLDNSALVRILKEPKNALVKQYKKLL 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTV 412
             + + L+F ++++ A+AD A+   +     GAR L++++E  + DI F        K V
Sbjct: 336 LMDNVELEFEDEALKAIADEAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKV 390

Query: 413 VIDAEYVRLHIGDFPSETD 431
           +I+ + ++    +     D
Sbjct: 391 IINKDTIKNKKPELVLTED 409



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L+    P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+
Sbjct: 55  VDLSSLPKPSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   + ++ R
Sbjct: 115 GPTGSGKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENILLKLIQNADYDIEKAER 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + SN   I GGA  G+  + E  ++    G    ++   +K   EL+++
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSTVQSKEEKDIGELLKE 283


>gi|57505536|ref|ZP_00371463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           upsaliensis RM3195]
 gi|57016083|gb|EAL52870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           upsaliensis RM3195]
          Length = 409

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 55/316 (17%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+E  DT    SN  + G    G   L++  ++ +          S+ +    +  D  +
Sbjct: 101 DLEDDDTELFKSNILLVGPTGSGKTLLAQTLARFLDVPIAICDATSLTEAG-YVGEDVEN 159

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +     + I+  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 160 ILTRLLQAANNDIERAQK-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSL 218

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILF+  GAF                            
Sbjct: 219 VNIPPKGGRKHPNQDFIQIDTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDNAKEENKA 278

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE+ GR  V   L  LN+ D   ILT+ ++ +I QY++L   +G
Sbjct: 279 LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDG 338

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ED++ A+A +A+   +     GAR L++++E ++ D+ F   + ++  +VI  E
Sbjct: 339 VNLKFEEDALRAIAQLALERKT-----GARGLRSIIEEMMVDLMFELHEYKDYDIVITKE 393

Query: 418 YVRLHIGDFPSETDMY 433
            V         +  + 
Sbjct: 394 VVCEGAKALLIKKKIS 409



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 9/231 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTG 63
           N +P+ + + LDRY+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 62  NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRLFRADLEDDDTELFKSNILLVGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A N +  +++    
Sbjct: 122 SGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDIERAQKGIVF 181

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 182 IDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQIDTSN 241

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                G +     L ++  + +G         + ++    L + E D L+ 
Sbjct: 242 ILFVCGGAFD--GLEQILKRKLGDKVVGFFDNAKEENKALLEKIEPDDLVH 290


>gi|163868072|ref|YP_001609276.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
 gi|189082484|sp|A9ISA8|CLPX_BART1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161017723|emb|CAK01281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           tribocorum CIP 105476]
          Length = 424

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/323 (23%), Positives = 136/323 (42%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  DIE+A +     N  + G    G   L++  ++++          ++
Sbjct: 95  NHYKRLAHQSKSNDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 150 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 207

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTS 267

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR P+   L+ L+ +    IL+ 
Sbjct: 268 IGFSATVKAPDERCVGEIFRDLEPEDLIKFGLIPEFIGRLPIVATLEDLDVNALMQILSQ 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++ A+A  A+   +     GAR L+++ME++L + 
Sbjct: 328 PKNALVKQYQRLFEMENVELAFHEDALRAIAKKAIERKT-----GARGLRSIMEKILLET 382

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L+  + VVI ++ V   
Sbjct: 383 MFELPALEGVQKVVISSDVVDEK 405



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIIAVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
           I GGA  G+  +     +    G    ++   ++C        E + LI
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLI 295


>gi|260892393|ref|YP_003238490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex
           degensii KC4]
 gi|260864534|gb|ACX51640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex
           degensii KC4]
          Length = 420

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 60/313 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++ +          S+ +    +  D  + L
Sbjct: 101 KIDDVELQKSNILMLGPTGCGKTLLAQTLARFLNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +
Sbjct: 160 LKLVQAADYDIEKAE-RGIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIAN 218

Query: 286 T-----------KYGSINTDHILFIASGAFH----------------------VSRPADL 312
                       ++  I+T +ILFI  GAF                       V R  DL
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIQNRISRKSMGFGAELVVQREQDL 278

Query: 313 -----------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                            +PE  GR P+ V L  L + D   ILT+  + LI QY++L + 
Sbjct: 279 GKILRQILPQDLLKFGLIPEFVGRLPIIVTLDPLTEDDLVRILTEPRNALIRQYQKLFEL 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           +G+ L+F  ++I A+A  A+  N+     GAR L+ ++E ++ ++ +      + T  +I
Sbjct: 339 DGVQLEFQPEAIRAIAQEALRRNT-----GARGLRAILEEIMLNVMYEIPSRGDVTKCII 393

Query: 415 DAEYVRLHIGDFP 427
             + V        
Sbjct: 394 SRDTVLKREQPIL 406



 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 8/235 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L    +P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NIL++G
Sbjct: 57  ELRDLPTPKEIKEFLDQYVIGQEHAKKTLAVAVYNHYKRVHLGGKIDDVELQKSNILMLG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  LV  A   + ++ R 
Sbjct: 117 PTGCGKTLLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLVQAADYDIEKAERG 176

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++    + +                 D
Sbjct: 177 IVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQID 236

Query: 176 ISNF-DIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +N   I GGA  GI   +    S+       + +    Q     L +     L+
Sbjct: 237 TTNILFICGGAFEGIEKIIQNRISRKSMGFGAELVVQREQDLGKILRQILPQDLL 291


>gi|312072918|ref|XP_003139285.1| ATP-dependent Clp protease [Loa loa]
 gi|307765553|gb|EFO24787.1| ATP-dependent Clp protease [Loa loa]
          Length = 570

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 156/383 (40%), Gaps = 66/383 (17%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           R     D+   L   NILL+GP+GVGKT I++ LAR+   P    + T  T+ GYVG +V
Sbjct: 240 RPLPENDVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDV 299

Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159
           E +++ LV  A   V  +++  V            LD +    A  N        ++   
Sbjct: 300 ESVVQKLVQNAGGNVERAQQGIV-----------FLDEIDKIAAAHN--------VQSHA 340

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
             D   +         +    +   +S   ++  + F +V  +     I       +  L
Sbjct: 341 FRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQVDTTD----ILFVASGAFTAL 396

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            R    RL       + ++ +    G+  + + DK+ A  S     + R+  Q DL+   
Sbjct: 397 DRIVGKRL------DKKTLGLGARSGVQRITDDDKLEAAISKKRDDLLRQADQGDLISF- 449

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                           ++PE+ GRFPV V   SL+K     +LT
Sbjct: 450 -------------------------------GIVPELVGRFPVIVPFHSLDKGMLIRVLT 478

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  ++L+ Q K     +G  L F+ D++D +A +A+   +     GAR L++++E+VL +
Sbjct: 479 EPRNSLLAQKKLEFAMDGADLSFSSDALDEIAALALERKT-----GARALRSIVEKVLLE 533

Query: 400 ISFSASDLQEKTVVIDAEYVRLH 422
             F+      ++V I+ E V+  
Sbjct: 534 AKFTVPGSDIESVHINRECVKGK 556



 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           P+EI S LD+YIIGQ+ AK+ +++ +   + R    
Sbjct: 143 PKEIYSFLDKYIIGQEQAKKTLSVGVYQHYLRLYHN 178


>gi|83311890|ref|YP_422154.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetospirillum
           magneticum AMB-1]
 gi|123541533|sp|Q2W3I0|CLPX_MAGSA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82946731|dbj|BAE51595.1| ATP-dependent protease Clp [Magnetospirillum magneticum AMB-1]
          Length = 421

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 65/327 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +   K  ++E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLQHGGKNNEVELAKS-----NILLIGPTGCGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAAEYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIGSRGRGTS 265

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV   L+ L+      IL+ 
Sbjct: 266 IGFGADVRGPDERRTGEILREVEPEDLLKFGLIPEFVGRLPVLATLEDLDVDALIDILSK 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E   L F++D++ A+A+ A+   +     GAR L+++ME +L D 
Sbjct: 326 PKNALVKQYQRLFEMEDTRLAFSDDALKAIAEKAIARKT-----GARGLRSIMETILLDT 380

Query: 401 SFSASDLQ-EKTVVIDAEYVRLHIGDF 426
            F    L     VVI+ E V       
Sbjct: 381 MFDLPGLDAVDEVVINKEVVEGRAKPL 407



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P++I   LD Y+IGQ  AK+ +++A+ N ++R Q      + EL   NILL+GPTG GK
Sbjct: 65  TPKDICQVLDDYVIGQSHAKKVLSVAVHNHYKRLQHGGKNNEVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-YPELMRDESDRLI 228
           I GGA  G+  +     +    G    +R   ++     L   E + L+
Sbjct: 245 ICGGAFAGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLL 293


>gi|312134618|ref|YP_004001956.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor owensensis OL]
 gi|311774669|gb|ADQ04156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor owensensis OL]
          Length = 433

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           ++++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 EALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|254706706|ref|ZP_05168534.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M163/99/10]
 gi|254710186|ref|ZP_05171997.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis B2/94]
 gi|254714184|ref|ZP_05175995.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M644/93/1]
 gi|254717619|ref|ZP_05179430.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M13/05/1]
 gi|256031680|ref|ZP_05445294.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           pinnipedialis M292/94/1]
 gi|256159836|ref|ZP_05457569.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           M490/95/1]
 gi|256255082|ref|ZP_05460618.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti
           B1/94]
 gi|260168814|ref|ZP_05755625.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp.
           F5/99]
 gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
 gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti
           str. Cudo]
 gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           B1/94]
 gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M13/05/1]
 gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M644/93/1]
 gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis B2/94]
 gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M163/99/10]
 gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp.
           F5/99]
 gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti
           M490/95/1]
 gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           pinnipedialis M292/94/1]
          Length = 424

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            ++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 YALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|256113665|ref|ZP_05454476.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella
           melitensis bv. 3 str. Ether]
          Length = 424

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIAMLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|238923370|ref|YP_002936886.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
 gi|259491258|sp|C4ZGF5|CLPX_EUBR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238875045|gb|ACR74752.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale
           ATCC 33656]
          Length = 423

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 60/318 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +  + +D     SN  + G    G   L++  ++V+          ++ +    +
Sbjct: 96  HYKRVLAGDTSDVELQKSNILMLGPTGSGKTLLAQTLARVINVPFAIADATTLTEAG-YV 154

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +       I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 155 GEDVENILLKLIQAADYDIERAE-HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLK 213

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF--------------HVSRPAD- 311
           ++EG+  S            +   I+T +ILFI  GAF               +   +D 
Sbjct: 214 ILEGTEASVPPQGGRKHPQQELIPIDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDV 273

Query: 312 ------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GR P+ V L++L++     IL + +++LI 
Sbjct: 274 KSKTELNVGEAFKHALPQDFVKFGLIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIK 333

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-D 406
           QY +L + +G+ L+FT+D+++A+AD A+   +     GAR L+ +ME V+ D+ +    D
Sbjct: 334 QYTKLFELDGVGLEFTDDAVNAIADKALERKT-----GARGLRAIMEAVMLDLMYRIPSD 388

Query: 407 LQEKTVVIDAEYVRLHIG 424
                 VID + V  ++ 
Sbjct: 389 KSISKCVIDKDTVEENLK 406



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R         EL   NIL++GPTG GKT
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  +       DE+
Sbjct: 127 LLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGIIYIDEI 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            +    +    I   + G+       ++                 +      D +N   I
Sbjct: 187 DKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIPIDTTNILFI 246

Query: 182 PGGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            GGA  G+  +     +  S    S  K K  ++V + +   +  +  + 
Sbjct: 247 CGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKF 296


>gi|209885040|ref|YP_002288897.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
 gi|229484078|sp|B6JGU8|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5]
          Length = 424

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 137/321 (42%), Gaps = 65/321 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLNHQTKHNDVELAKS-----NILLIGPTGSGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRTTS 265

Query: 305 -----HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V  P D                   L+PE  GR PV   L+ L+++  + IL +
Sbjct: 266 IGFAASVLAPEDRRTGEIFREVEPEDLLKYGLIPEFVGRLPVVATLEDLDEASLKKILVE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ++++ A+A  A+   +     GAR L++++E +L + 
Sbjct: 326 PKNALVKQYQRLFEMENVELTFADEALGAVARKAIERKT-----GARGLRSILESILLET 380

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    L+  + VVI  E V 
Sbjct: 381 MFDLPGLEGVEEVVISREVVE 401



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  +        
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG 226


>gi|315645730|ref|ZP_07898854.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453]
 gi|315279208|gb|EFU42518.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 67/345 (19%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A  +         +     +K  D+E+  +     N  + G    G   
Sbjct: 70  ILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIEDVELQKS-----NILLLGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAFH----------------------------------VSRPADL-----LPEIQGR 319
           I  GAF                                   +  P DL     +PE  GR
Sbjct: 243 ICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGLIPEFVGR 302

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L+++    IL++ ++ L  QY++L++ + + L F   +++A+A  A+  N+
Sbjct: 303 LPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPGALEAIAREAIKRNT 362

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
                GAR L++++E ++ D+ +      + K  VI  + VR  +
Sbjct: 363 -----GARGLRSIIEGIMLDVMYEVPSRDDIKDCVITEQVVRDKV 402



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PR+I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NILL+GPTG GK
Sbjct: 63  KPRDIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|269125775|ref|YP_003299145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
 gi|268310733|gb|ACY97107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermomonospora curvata DSM 43183]
          Length = 425

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 61/302 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 171 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF--------------------------HVSRPAD------ 311
              ++  I+T ++LFI  GAF                            S  +D      
Sbjct: 230 PHQEFIQIDTTNVLFICGGAFAGLEKIIEARIGKQGMGFGAVIRSKDEASSSSDILSQIM 289

Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE  GR PV  ++ +L++     ILT+ ++ L+ QYK L + +G+ L+FT
Sbjct: 290 PEDLLKFGMIPEFVGRLPVITNVHNLDRDALIAILTEPKNALVKQYKRLFELDGVELEFT 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
            D+++A+AD A+   +     GAR L+ +ME VL  + +     Q+   VVI  E V  H
Sbjct: 350 PDALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYEVPSRQDVARVVITREAVLEH 404

Query: 423 IG 424
           + 
Sbjct: 405 VN 406



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
            PREI   LD Y+IGQ+ AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG 
Sbjct: 63  KPREIYEFLDSYVIGQEAAKKALSVAVYNHYKRIQSGDSGRDDSVELAKSNILLLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V+++       
Sbjct: 123 GKTLLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178
           DEV + A  +    I   + G+       ++                        D +N 
Sbjct: 183 DEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNV 242

Query: 179 FDIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             I GGA  G+  + E  +  + MG G   + +         L +   + L+
Sbjct: 243 LFICGGAFAGLEKIIEARIGKQGMGFGAVIRSKDEASSSSDILSQIMPEDLL 294


>gi|291525458|emb|CBK91045.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale DSM 17629]
          Length = 423

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 60/318 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +  + +D     SN  + G    G   L++  ++V+          ++ +    +
Sbjct: 96  HYKRVLAGDTSDVELQKSNILMLGPTGSGKTLLAQTLARVINVPFAIADATTLTEAG-YV 154

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +       I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 155 GEDVENILLKLIQAADYDIERAE-HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLK 213

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF--------------HVSRPAD- 311
           ++EG+  S            +   I+T +ILFI  GAF               +   +D 
Sbjct: 214 ILEGTEASVPPQGGRKHPQQELIPIDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDV 273

Query: 312 ------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GR P+ V L++L++     IL + +++LI 
Sbjct: 274 KSKTELNVGEAFKHALPQDFVKFGLIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIK 333

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-D 406
           QY +L + +G+ L+FT+D+++A+AD A+   +     GAR L+ +ME V+ D+ +    D
Sbjct: 334 QYTKLFELDGVGLEFTDDAVNAIADKALERKT-----GARGLRAIMEAVMLDLMYRIPSD 388

Query: 407 LQEKTVVIDAEYVRLHIG 424
                 VID + V  ++ 
Sbjct: 389 KSISKCVIDKDTVEENLK 406



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R         EL   NIL++GPTG GKT
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  +       DE+
Sbjct: 127 LLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGIIYIDEI 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            +    +    I   + G+       ++                 +      D +N   I
Sbjct: 187 DKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIPIDTTNILFI 246

Query: 182 PGGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            GGA  G+  +     +  S    S  K K  ++V + +   +  +  + 
Sbjct: 247 CGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKF 296


>gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
 gi|166214751|sp|A0LSV2|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus
           cellulolyticus 11B]
          Length = 427

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 114 SNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 173 DVKRAET-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 232 PHQEFIQIDTTNILFIVGGAFAGLEKIIEARIGKKGIGFTATLHGKRDLNTADIFSHVMP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + SL++     ILT+ ++ L+ QY+ L + + + L+FT+
Sbjct: 292 EDLLKYGMIPEFVGRLPVITTVTSLDREALIRILTEPKNALVRQYQRLFELDSVDLEFTD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +      +   VVI  + V  ++
Sbjct: 352 DALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYDIPSRTDVARVVITRDVVLNNV 406

Query: 424 GDFPSETD 431
                  D
Sbjct: 407 NPTLVPRD 414



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----DELMPKNILLVGPT 62
            PREI   LD+Y+IGQ+ AK+A+++A+ N ++R Q+    R      EL   NILL+GPT
Sbjct: 63  KPREICEFLDQYVIGQETAKKALSVAVYNHYKRIQVGGSSRSSNDSVELAKSNILLIGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+ +     
Sbjct: 123 GCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++                        D +
Sbjct: 183 YIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTT 242

Query: 178 NF-DIPGGASVGILNLSE 194
           N   I GGA  G+  + E
Sbjct: 243 NILFIVGGAFAGLEKIIE 260


>gi|50545888|ref|XP_500482.1| YALI0B04158p [Yarrowia lipolytica]
 gi|49646348|emb|CAG82709.1| YALI0B04158p [Yarrowia lipolytica]
          Length = 576

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 172/467 (36%), Gaps = 108/467 (23%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----------------RRQQLPAD--- 46
           + +PR+++++L+++I+GQ  +K+  A+A+ N +                +R         
Sbjct: 98  DMTPRKLLAKLNQFIVGQDRSKKVFAVAIYNHYLRSGLLIDERQWSDYMKRINAAKGKIS 157

Query: 47  -----------------LRDELM----------PKNILLVGPTGVGKTAISRRLARLAGA 79
                            L++E              N+L+VGP+G GKT +++ LA     
Sbjct: 158 DRWENTDEPQSTDYINVLKEEYDEETESQVIPDKANLLVVGPSGSGKTMMAKTLASFLSL 217

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
           P    + T  T+ GYVG +V+  ++ L  V    V       +           +LD + 
Sbjct: 218 PISISDCTALTQAGYVGDDVQSCVQQLYQVCGGDVERCEHGII-----------VLDEID 266

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
                         KL   E S +++  E       +          +         +  
Sbjct: 267 --------------KLAKREGSGRDVSGE--GVQQSLLKMLEGTLVQISGTPGRAQTTAG 310

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR- 258
           +  G     + SV                   T++  +I  +     V L   D + AR 
Sbjct: 311 LPGGGSAMPKESV-------------------TINTQNILFILMGAFVGLS--DVVSARC 349

Query: 259 ----DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314
               D G G  V + G         +   V+   G   T + L + +      +   L+P
Sbjct: 350 NTSSDIGFGAHVRQTGEDEGKQKDSQDKLVTLANG--ETANALDLITS--EDLKKYGLIP 405

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E+ GR P  V L  L + D   IL + ++ L+ Q++   K+ G  + FT+ ++  +A  A
Sbjct: 406 ELLGRAPTIVKLNHLTEEDLLRILIEPKNALVEQFRVKFKSFGTRIVFTKPALRIIAKTA 465

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +        +GAR L  VME++  + ++       K V++D+  +R 
Sbjct: 466 L-----SEGLGARGLHAVMEKICLNANYECPGTSTKYVLVDSSVLRD 507


>gi|291528434|emb|CBK94020.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           rectale M104/1]
          Length = 423

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 60/318 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +  + +D     SN  + G    G   L++  ++V+          ++ +    +
Sbjct: 96  HYKRVLAGDTSDVELQKSNILMLGPTGSGKTLLAQTLARVINVPFAIADATTLTEAG-YV 154

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +       I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 155 GEDVENILLKLIQAADYDIERAE-HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLK 213

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF--------------HVSRPAD- 311
           ++EG+  S            +   I+T +ILFI  GAF               +   +D 
Sbjct: 214 ILEGTEASVPPQGGRKHPQQELIPIDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDV 273

Query: 312 ------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   L+PE  GR P+ V L++L++     IL + +++LI 
Sbjct: 274 KSKTELNVGEAFKHALPQDFVKFGLIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIK 333

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-D 406
           QY +L + +G+ L+FT+D+++A+AD A+   +     GAR L+ +ME V+ D+ +    D
Sbjct: 334 QYTKLFELDGVGLEFTDDAVNAIADKALERKT-----GARGLRAIMEAVMLDLMYRIPSD 388

Query: 407 LQEKTVVIDAEYVRLHIG 424
                 VID + V  ++ 
Sbjct: 389 KSISKCVIDKDTVEENLK 406



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P E+ + LD Y+IGQ  AK+ +++A+ N ++R         EL   NIL++GPTG GKT
Sbjct: 67  TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRVLAGDTSDVELQKSNILMLGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  +       DE+
Sbjct: 127 LLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGIIYIDEI 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            +    +    I   + G+       ++                 +      D +N   I
Sbjct: 187 DKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIPIDTTNILFI 246

Query: 182 PGGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            GGA  G+  +     +  S    S  K K  ++V + +   +  +  + 
Sbjct: 247 CGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKF 296


>gi|239827924|ref|YP_002950548.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp.
           WCH70]
 gi|259491261|sp|C5D5L4|CLPX_GEOSW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|239808217|gb|ACS25282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. WCH70]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 59/305 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIDDVELSKSNILMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSRP------------------------- 309
                       ++  I+T +ILFI  GAF    P                         
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEPIIKRRLGKKVIGFGADIQQSDVDEK 278

Query: 310 -------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                          L+PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +
Sbjct: 279 NLLSKVLPEDLLKFGLIPEFVGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L+F E+++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  +I 
Sbjct: 339 GVELEFEEEALREIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIIT 393

Query: 416 AEYVR 420
            E VR
Sbjct: 394 VETVR 398



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|226311382|ref|YP_002771276.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus
           brevis NBRC 100599]
 gi|254763836|sp|C0ZAG3|CLPX_BREBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226094330|dbj|BAH42772.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus
           brevis NBRC 100599]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 62/312 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIEDVELQKSNIMLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTSNILFICGGAFDGVEQIIKRRLGKKVIGFGADFGDGVKGDL 278

Query: 309 ----------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DL     +PE  GR PV   L+ L++     ILT+ +++L+ QY++L+
Sbjct: 279 KAGEYLKYILPEDLLKFGLIPEFVGRLPVLATLEPLDEETLVRILTEPKNSLVKQYQKLL 338

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TV 412
             +G+ L+F   ++  +A  A+  N+     GAR L+ ++E+++ D+ +     ++    
Sbjct: 339 SLDGVELEFDNGALLQIAKEAIKRNT-----GARGLRAIIEQIMLDMMYELPSREDVNKC 393

Query: 413 VIDAEYVRLHIG 424
           VI  E VR  + 
Sbjct: 394 VITEETVRDKVK 405



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +     P EI   LD Y+IGQ  AK+++++A+ N ++R    A + D EL   NI+L+
Sbjct: 56  IDMKEIPKPVEIRKILDDYVIGQDMAKKSLSVAVYNHYKRINSGAKIEDVELQKSNIMLI 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 116 GPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235

Query: 175 DISNF-DIPGGASVGILNL 192
           D SN   I GGA  G+  +
Sbjct: 236 DTSNILFICGGAFDGVEQI 254


>gi|116204749|ref|XP_001228185.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51]
 gi|88176386|gb|EAQ83854.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51]
          Length = 579

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 149/398 (37%), Gaps = 64/398 (16%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +  +   A    ++   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G+
Sbjct: 178 YIPENFAAPEHVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQ 237

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATS--NTREVFRKKL 155
           +VE  I  L+  A   ++ +    +           +LD           N R+V  + +
Sbjct: 238 DVESCIERLLIEANYDIKAAEHGII-----------VLDEFDKIAKRETVNGRDVGGEGV 286

Query: 156 RDGEISDKE---IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +   +   E   + I + D     +  + P G        +    K              
Sbjct: 287 QQALLKLVEGTKVTINIKDQRQSRTTNNPPSGYGPSNPQSTPPAGK-------------- 332

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGVSREG 270
                          +D  T+   +I  V     V LD+    ++     G G  V    
Sbjct: 333 ---------------VDQYTIDTTNILFVFCGAFVGLDKTVLRRVAKPSIGFGSEVRGRS 377

Query: 271 V----QRDLLPLVEGSSVSTK----YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322
                 +D+LP    S +  +     GS  T       +    + +    +PE+ GR   
Sbjct: 378 ASMSGSKDILPPEMYSHLPHQPAFAGGSSGTGFTPLDLTTPADL-QAYGFIPELIGRLHN 436

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
              L  L+  +   ILT+  ++L+ QY  L +T    L+FT  ++ A+A+ A    +   
Sbjct: 437 ICALTPLSLDELYRILTEPRNSLVAQYTALFETYPSKLNFTRKALTAIAERAAKNET--- 493

Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             GAR L+  MERVL D  + A       V+I    V+
Sbjct: 494 --GARGLKMEMERVLADPMYDAP---TPYVLITEGCVQ 526


>gi|329923473|ref|ZP_08278954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. HGF5]
 gi|328941273|gb|EGG37568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. HGF5]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 134/309 (43%), Gaps = 60/309 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  +K++          S+ +    +  D  + L
Sbjct: 101 KIEDVELQKSNILLLGPTGSGKTLLAQTMAKILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAE-RGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFH----------------------------- 305
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKP 278

Query: 306 -----VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                +  P DLL     PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ 
Sbjct: 279 GEYLTMVLPEDLLKFGLIPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEF 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L F   +++A+A  A+  N+     GAR L++++E ++ D+ +      + K  VI
Sbjct: 339 DNVNLKFEPGALEAIAREAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVI 393

Query: 415 DAEYVRLHI 423
             + VR  +
Sbjct: 394 TEQVVRDKV 402



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD+Y+IGQ  AK+++++A+ N ++R    + + D EL   NILL+GPTG GK
Sbjct: 63  KPREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|51891497|ref|YP_074188.1| ATP-dependent protease ATP-binding subunit ClpX [Symbiobacterium
           thermophilum IAM 14863]
 gi|61211457|sp|Q67SJ9|CLPX_SYMTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51855186|dbj|BAD39344.1| ATP-dependent Clp protease ATP-binding subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 424

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 150/365 (41%), Gaps = 70/365 (19%)

Query: 118 RRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              +V + A I A   ILD   +  + A            +   +  K  D+E+  +   
Sbjct: 58  ELKDVPKPAEIKA---ILDQYVIGQERAKRTLAVAVYNHYKRINLGSKLDDVELQKS--- 111

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             N  + G    G   L++  ++++          S+ +    +  D  + L+ +     
Sbjct: 112 --NILMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAAD 168

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------- 286
             I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S        
Sbjct: 169 YDIEKAE-RGIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRK 227

Query: 287 ----KYGSINTDHILFIASGAF---------HVSR------------------------- 308
               ++  INT +ILFI  GAF          V R                         
Sbjct: 228 HPHQEFIQINTTNILFICGGAFDGIDKIIANRVGRSGLGFGADIRSKQEQNVGELLKQIM 287

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR P+ V L +L++     IL + ++ L+ QY++L++ + I L+F 
Sbjct: 288 PEDLLKFGLIPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFE 347

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           E+++ A+A  A+  N+     GAR L+ ++E ++ D+ +      + T  VI  + V   
Sbjct: 348 EEAVRAIAKEALRRNT-----GARGLRAIIEDIMTDVMYEVPSRTDVTKCVITKDVVLKK 402

Query: 423 IGDFP 427
                
Sbjct: 403 QEPIL 407



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 6/196 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L     P EI + LD+Y+IGQ+ AKR +A+A+ N ++R  L + L D EL   NIL++G
Sbjct: 58  ELKDVPKPAEIKAILDQYVIGQERAKRTLAVAVYNHYKRINLGSKLDDVELQKSNILMLG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ R 
Sbjct: 118 PTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAERG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++    +                   +
Sbjct: 178 IVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIN 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   ++
Sbjct: 238 TTNILFICGGAFDGID 253


>gi|312128164|ref|YP_003993038.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778183|gb|ADQ07669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 433

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTYLAQTLAKMLNVPFAIADATTLTEAG-YVGEDVENILLRLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-RGIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKVESKKEKKIGDILRQIMP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L +L+K     ILT+ ++ L+ QY++L   +G+ L+F +
Sbjct: 289 QDLLKFGMIPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
           D+++A+AD A+  N+     GAR L+ +ME ++ D+ F      + + V+I    V    
Sbjct: 349 DALEAIADKAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLKED 403

Query: 424 GDFP 427
               
Sbjct: 404 KPIV 407



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+EI   LD+Y++GQ  AK+ +++A+ N ++R       +D  EL   NIL++GPTG G
Sbjct: 63  TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNADYDIERAERGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D +N  
Sbjct: 183 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I GGA  GI  + E    +       K      +K    L +     L+    +     
Sbjct: 243 FICGGAFEGIEKIIEKRIGEKTLGFNAKVESKKEKKIGDILRQIMPQDLLKFGMIPE--- 299

Query: 239 QMVENYGIVFLDEFDK 254
            +     IV LD  DK
Sbjct: 300 FIGRVPIIVTLDALDK 315


>gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
 gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199]
          Length = 424

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 68/344 (19%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           ++ ++  L  K   S       K+L  G+ ++   D+E+A +     N  + G    G  
Sbjct: 77  DDYVIGQLKAKRILSVAVHNHYKRLAHGQKNN---DVELAKS-----NILLIGPTGCGKT 128

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L++  ++++          ++ +    +  D  + ++ +      +++  +  GIV++D
Sbjct: 129 LLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYID 186

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  ++T +IL
Sbjct: 187 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 246

Query: 298 FIASGAF----------------------------------HVSRPADL-----LPEIQG 318
           FI  GAF                                      P DL     +PE  G
Sbjct: 247 FICGGAFSGLEKIISNRSRGSSIGFGADVRAPDDRRTGEVLREVEPEDLLKFGLIPEFVG 306

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   L+ L +     ILT  ++ L+ QY+ L + E + L+F +D++ A+A  A++  
Sbjct: 307 RLPVLATLEDLEEDALVDILTKPKNALVKQYQRLFEMEDVRLEFRDDALRAIARKAIDRK 366

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +     GAR L+++ME +L D  +    L     ++I+ + V  
Sbjct: 367 T-----GARGLRSIMENILLDPMYDLPQLDGVDEIIINGDVVNQ 405



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P +I   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 68  TPGDICQVLDDYVIGQLKAKRILSVAVHNHYKRLAHGQKNNDVELAKSNILLIGPTGCGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 128 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 188 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 247

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMS-VQKCYPELMRDESDRLI 228
           I GGA  G+  +    S+    G    +R    ++    L   E + L+
Sbjct: 248 ICGGAFSGLEKIISNRSRGSSIGFGADVRAPDDRRTGEVLREVEPEDLL 296


>gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
 gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp.
           1NLS2]
          Length = 424

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 65/321 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLNHQTKHNDVELAKS-----NILLIGPTGSGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFSGLEKIISSRGRTTS 265

Query: 306 ------VSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V  P D                   L+PE  GR PV   L+ L+++  + IL +
Sbjct: 266 IGFAASVLAPEDRRTGEIFREVEPEDLLKYGLIPEFVGRLPVVATLEDLDEASLKKILVE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E I L F ++++ A+A  A+   +     GAR L++++E +L + 
Sbjct: 326 PKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKT-----GARGLRSILESILLET 380

Query: 401 SFSASDLQE-KTVVIDAEYVR 420
            F    L+  + VVI  E V 
Sbjct: 381 MFDLPGLEGVEEVVISREVVE 401



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVY--- 181

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  +        
Sbjct: 182 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG 226


>gi|261405360|ref|YP_003241601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. Y412MC10]
 gi|261281823|gb|ACX63794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. Y412MC10]
          Length = 421

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 134/309 (43%), Gaps = 60/309 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  +K++          S+ +    +  D  + L
Sbjct: 101 KIEDVELQKSNILLLGPTGSGKTLLAQTMAKILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAE-RGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFH----------------------------- 305
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKP 278

Query: 306 -----VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                +  P DLL     PE  GR PV   L+ L+++    IL++ ++ L  QY++L++ 
Sbjct: 279 GEYLTMVLPEDLLKFGLIPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEF 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L F   +++A+A  A+  N+     GAR L++++E ++ D+ +      + K  VI
Sbjct: 339 DNVNLKFEPSALEAIAREAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVI 393

Query: 415 DAEYVRLHI 423
             + VR  +
Sbjct: 394 TEQVVRDKV 402



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD+Y+IGQ  AK+++++A+ N ++R    + + D EL   NILL+GPTG GK
Sbjct: 63  KPREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|228909654|ref|ZP_04073477.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
 gi|228849943|gb|EEM94774.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis IBL 200]
          Length = 238

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 30/233 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +KL  G + D+ + IEV +  S + +     G     +N  +     M    K
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTK 233


>gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 432

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 60/317 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +        SN  + G    G  +L++  ++++          ++ +    +  D  + L
Sbjct: 111 KEEPVELGKSNILLIGPTGCGKTHLAQTLARMLDVPFAIADATALTEAG-YVGEDVENIL 169

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVS 285
           + +       +   +  GI+++DE DK+  +         VS EGVQ+ LL ++EG++VS
Sbjct: 170 LKLIQAADYDVARAQT-GILYIDEVDKVSRKSDNPSTTRDVSGEGVQQALLKILEGTTVS 228

Query: 286 T-----------KYGSINTDHILFIASGAFH----------------------------- 305
                       ++  I+T ++LF+  GAF                              
Sbjct: 229 VPPQGGRKHPHQEFIQIDTTNVLFVLGGAFAGLEKIVEQRTGRSGIGFGAEVRSRQQRQS 288

Query: 306 -----VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                 +RP DL     +PE+ GR PV   L+ L++     ILT+  + L+ QY++L + 
Sbjct: 289 EAALTDARPDDLVKFGLIPELVGRLPVISTLQPLDRETLVRILTEPRNALVKQYQKLFRM 348

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           + + L FT+D+++A+A+ A+   +     GAR  + ++E VL D+ +      + T VV+
Sbjct: 349 DDVELRFTDDAVEAIAEQAMLRGT-----GARATRAILEEVLLDLMYEVPSRDDVTEVVV 403

Query: 415 DAEYVRLHIGDFPSETD 431
           D  +V  H+       D
Sbjct: 404 DRGFVLDHVNPTLVPRD 420



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------ADLRDELMPKNILL 58
            PREI + LD+Y++GQQ AK+A+++A+ N ++R Q            +   EL   NILL
Sbjct: 65  KPREIDAFLDQYVVGQQGAKQALSVAVYNHYKRIQPETTGRGRHATKEEPVELGKSNILL 124

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 125 IGPTGCGKTHLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVARAQ 184


>gi|296134053|ref|YP_003641300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola
           sp. JR]
 gi|296032631|gb|ADG83399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola
           potens JR]
          Length = 419

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 144/355 (40%), Gaps = 67/355 (18%)

Query: 132 ERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           + ILD   +  + A            +   + +K  D+E+  +     N  + G    G 
Sbjct: 68  KEILDQYVIGQEPAKKALAVAVYNHYKRINMGNKIDDVELQKS-----NIVMLGPTGSGK 122

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             L++  ++++          S+ +    +  D  + L+ +       ++  E  GIV++
Sbjct: 123 TLLAQTLARLLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAEK-GIVYI 180

Query: 250 DEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHI 296
           DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  ++T +I
Sbjct: 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQLDTTNI 240

Query: 297 LFIASGAFHVSR----------------------------------PADL-----LPEIQ 317
           LFI  GAF                                      P DL     +PE  
Sbjct: 241 LFICGGAFDGIEKIIQNRIGKKTLGFGAEIKSQKEKNVGDILKHILPEDLLKFGLIPEFV 300

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L++L+++    ILT+  + LI QY++L + + I L+FT+D++  +A  A+  
Sbjct: 301 GRLPVIVTLEALDENALVRILTEPRNALIKQYQKLFELDNIALEFTDDALRTIAQEAMKR 360

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           N+     GAR L+ ++E ++ ++ +      +     I  E V           D
Sbjct: 361 NT-----GARGLRAIIEDIMLEVMYDIPSRDDIAKCTITKEVVLKKEPPILVTVD 410



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD+Y+IGQ+ AK+A+A+A+ N ++R  +   + D EL   NI+++GPTG GK
Sbjct: 63  KPREIKEILDQYVIGQEPAKKALAVAVYNHYKRINMGNKIDDVELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 123 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIVYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILF 242

Query: 182 PGGASVGILN--LSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   +   +     K     G+  K +   +V      ++ ++  + 
Sbjct: 243 ICGGAFDGIEKIIQNRIGKKTLGFGAEIKSQKEKNVGDILKHILPEDLLKF 293


>gi|168186117|ref|ZP_02620752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
 gi|169296071|gb|EDS78204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum C str. Eklund]
          Length = 431

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 138/319 (43%), Gaps = 60/319 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++V D     SN  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 98  DVDVDDVELQKSNILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQNADYDIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  INT +ILFI  GAF                            
Sbjct: 216 ASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSDVQSKDEK 275

Query: 306 -------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                   S P DL     +PE  GR P+ V L+SL+      IL + ++ L+ QYK+L+
Sbjct: 276 DIGELLKESVPEDLLKFGLIPEFIGRLPIMVTLQSLDNDALVKILKEPKNALVKQYKKLL 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTV 412
             + + L+F ++++ ++AD A+   +     GAR L++++E  + DI F        K V
Sbjct: 336 LMDNVELEFEDEALKSIADEAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKV 390

Query: 413 VIDAEYVRLHIGDFPSETD 431
           +I+ + ++    +     D
Sbjct: 391 IINKDTIKDKKPELVLTED 409



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L+    P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+
Sbjct: 55  VDLSSLPKPSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   + ++ R
Sbjct: 115 GPTGSGKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAER 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + SN   I GGA  G+  + E  ++    G    ++   +K   EL+++
Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSDVQSKDEKDIGELLKE 283


>gi|254701853|ref|ZP_05163681.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv.
           5 str. 513]
 gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
 gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 5 str. 513]
          Length = 424

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 60/295 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           D++ A+A+ AV   +     GAR L+++ME++L D  F    L+  + VVI  + 
Sbjct: 352 DALRAIANKAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDV 401



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|310643605|ref|YP_003948363.1| ATP-dependent clp protease ATP-binding subunit clpx [Paenibacillus
           polymyxa SC2]
 gi|309248555|gb|ADO58122.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
          Length = 418

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 148/352 (42%), Gaps = 66/352 (18%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A  +         +     +K  D+E+  +     N  + G    G   
Sbjct: 70  ILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKS-----NILMLGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAF---------------------------------HVSRPADL-----LPEIQGRF 320
           I  GAF                                  +  P DL     +PE  GR 
Sbjct: 243 ICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLIPEFVGRL 302

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L++     IL++ ++ L  QY+++++ + + L+F +D+++A+A  A+  N+ 
Sbjct: 303 PVISTLEPLDEKTLVRILSEPKNALTKQYQKMLELDNVQLEFKQDALEAIAREAIKRNT- 361

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               GAR L+ ++E ++ D+ +      +  T VI+ + V+  I      TD
Sbjct: 362 ----GARGLRAIIEGIMLDVMYEVPSRDDVTTCVINEQVVKDKIAPELGGTD 409



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 118/289 (40%), Gaps = 11/289 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I   LD+Y+IGQ  AK+++++A+ N ++R      + D EL   NIL++GPTG GK
Sbjct: 63  KPMQIREILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +   L        +     KK I  +      +L   E   ++  + + +  +   
Sbjct: 243 ICGGAFDGLE-----QMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLIPE 297

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
               +  +   + +  +     +   +  + +    ++E  +V  ++  
Sbjct: 298 FVGRLPVISTLEPLDEKTLVRILSEPKNALTKQYQKMLELDNVQLEFKQ 346


>gi|58038574|ref|YP_190538.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
 gi|81352673|sp|Q5FUR4|CLPX_GLUOX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58000988|gb|AAW59882.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconobacter
           oxydans 621H]
          Length = 421

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 132/310 (42%), Gaps = 65/310 (20%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DIE+A +     N  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 105 DIEIAKS-----NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAG-YVGEDVEN 158

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            ++ +      ++   +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+ 
Sbjct: 159 IILKLLQSADYNVDRAQ-RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTV 217

Query: 284 VST-----------KYGSINTDHILFIASGAFHV-------------------------- 306
            S            ++  ++T ++LFI  GAF V                          
Sbjct: 218 ASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAVWTRSFRRVARDRASASVQMCVLMTSV 277

Query: 307 --------SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DL     +PE  GR PV   L  L++S    IL+  ++ LI QY  L 
Sbjct: 278 VLGAILQSVEPEDLLKFGLIPEFIGRLPVIAALNDLDESALIQILSKPKNALIKQYGRLF 337

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + EG+ L FTED++ A+A  A+   +     GAR L++++E +L    F    L+  + V
Sbjct: 338 EMEGVKLTFTEDALAAIAKRAIERKT-----GARGLRSILESILLGTMFDLPGLEGVEEV 392

Query: 413 VIDAEYVRLH 422
           VI+ +     
Sbjct: 393 VINRDVAENK 402



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ +AKRA+++A+ N ++R    A   D E+   NILL+GPTG GK
Sbjct: 64  TPKEICKVLDDYVIGQFEAKRALSVAVHNHYKRLAHAAKSSDIEIAKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R  V    
Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVDRAQRGIVY--- 180

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  +        
Sbjct: 181 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGG 225


>gi|229123343|ref|ZP_04252547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
 gi|228660119|gb|EEL15755.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus 95/8201]
          Length = 238

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 30/233 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +KL  G + D+ + IEV +  S + +     G     +N  +     M    K
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTK 233


>gi|56421187|ref|YP_148505.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus
           kaustophilus HTA426]
 gi|261418332|ref|YP_003252014.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp.
           Y412MC61]
 gi|297529184|ref|YP_003670459.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. C56-T3]
 gi|319767709|ref|YP_004133210.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC52]
 gi|61211380|sp|Q5KWJ9|CLPX_GEOKA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56381029|dbj|BAD76937.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Geobacillus kaustophilus HTA426]
 gi|261374789|gb|ACX77532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC61]
 gi|297252436|gb|ADI25882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. C56-T3]
 gi|317112575|gb|ADU95067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. Y412MC52]
          Length = 421

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 59/305 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIDDVELSKSNILMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSRP------------------------- 309
                       ++  I+T +ILFI  GAF    P                         
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEK 278

Query: 310 -------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                          L+PE  GR PV   L+ L++     ILT  ++ ++ QY+++++ +
Sbjct: 279 NLLSKVLPEDLLKFGLIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L+F E ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  +I 
Sbjct: 339 GVELEFEEAALREIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIIT 393

Query: 416 AEYVR 420
            + VR
Sbjct: 394 LDTVR 398



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 243 ICGGAFDGIE 252


>gi|27262354|gb|AAN87458.1| ATP-dependent clp protease ATP-binding subunit ClpX [Heliobacillus
           mobilis]
          Length = 420

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 60/317 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 102 KIDDIELQKSNIVMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 160

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 161 LKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 219

Query: 286 T-----------KYGSINTDHILFIASGAF---------HVSRPA--------------- 310
                       ++  ++T +ILFI  GAF          V + A               
Sbjct: 220 VPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIDKLIMNRVGKKAMGFNADIKGKQDKNI 279

Query: 311 ---------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE  GR PV V L +L++     ILT+ ++ LI QY++  + 
Sbjct: 280 GEVLRDILPGDLLKFGLIPEFVGRLPVIVTLDALDEDALVRILTEPKNALIKQYQKFFEL 339

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           + + L+F ++++ A+A  A+  N+     GAR L+ ++E V+ D+ F      + T  ++
Sbjct: 340 DQVNLEFQDEALRAIAHEAIKRNT-----GARGLRAIIEEVMLDVMFDIPSRNDVTKCMV 394

Query: 415 DAEYVRLHIGDFPSETD 431
             E +           D
Sbjct: 395 TKEVILKQKEPVLVTAD 411



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 13/224 (5%)

Query: 2   KLTFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNI 56
           + TF+      P+EI   LD+Y+IGQ  AK+A+++A+ N ++R  L + + D EL   NI
Sbjct: 54  ENTFDLGDVPKPKEIREILDQYVIGQDQAKKALSVAVYNHYKRINLGSKIDDIELQKSNI 113

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +
Sbjct: 114 VMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEK 173

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           + +     DE+ + A  +    I   + G+       ++    +                
Sbjct: 174 AEKGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 233

Query: 172 TSSDISNFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSV 212
              D +N     G +   ++   ++ +  K MG     K +   
Sbjct: 234 IQLDTTNILFICGGAFDGIDKLIMNRVGKKAMGFNADIKGKQDK 277


>gi|49474140|ref|YP_032182.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana
           str. Toulouse]
 gi|61211489|sp|Q6G177|CLPX_BARQU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49239644|emb|CAF26004.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           quintana str. Toulouse]
          Length = 424

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 75/323 (23%), Positives = 135/323 (41%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  DIE+A +     N  + G    G   L++  ++++          ++
Sbjct: 95  NHYKRLAHQSKSNDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 150 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 207

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  +NT +ILFI  GAF               
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVNTTNILFICGGAFAGLERIISGRGEKTS 267

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR P+   L+ L+ +    IL+ 
Sbjct: 268 IGFSATVKAPDERCVGEIFRDLEPEDLIKFGLIPEFIGRLPIVATLEDLDVNALVQILSQ 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++  +A  A+   +     GAR L+++ME++L + 
Sbjct: 328 PKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKT-----GARGLRSIMEKILLET 382

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L+  + VVI ++ V   
Sbjct: 383 MFELPTLEGVQKVVISSDVVDGK 405



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +       I   + G+       ++    +            +      + +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVNTTNILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
           I GGA  G+  +     +    G    ++   ++C        E + LI
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLI 295


>gi|229140471|ref|ZP_04269026.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
 gi|228643032|gb|EEK99308.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus BDRD-ST26]
          Length = 238

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 30/233 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +KL  G + D+ + IEV +  S + +     G     +N  +     M    K
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTK 233


>gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
 gi|254763850|sp|B8CY73|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothermothrix orenii H 168]
          Length = 416

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 60/310 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+++ D     SN  + G    G   L++  ++++          S+ +    +  D  +
Sbjct: 99  DMKIDDVELQKSNILMVGPTGCGKTLLAQTLARILDVPFAITDATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 158 ILLKLIQAADYDIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
            S            ++  I+T +ILFIA GAF                            
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFIAGGAFDGLDKIIKSRIDNKVMGFGADIKSKTEE 276

Query: 305 HVSR------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           +V        P DL     +PE  GR PV V L  L + D   ILT+  + L+ QYK+  
Sbjct: 277 NVGETLKYILPEDLLRYGLIPEFIGRLPVIVTLNELVEEDLVKILTEPRNALVKQYKKFF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + + + L+FT +++ A+A  A+  N+     GAR L+ V+E  + DI +           
Sbjct: 337 EMDNVELEFTPEALTAIAQKALERNT-----GARGLRAVVEEAILDIMYDLPSEPGIAKC 391

Query: 413 VIDAEYVRLH 422
           VI  E ++ H
Sbjct: 392 VITPEVIKNH 401



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           L     PREI   LD+Y++GQ+ AK+++++A+ N ++R      + D EL   NIL+VGP
Sbjct: 58  LNNIPKPREIKKILDQYVVGQERAKKSLSVAVYNHYKRVNSDMKIDDVELQKSNILMVGP 117

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ R  
Sbjct: 118 TGCGKTLLAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAADYDIEKAERGI 177

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DE+ + A  +    I   + G+       ++    +                   D 
Sbjct: 178 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237

Query: 177 SNFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMS--VQKCYPELMRD 222
           +N     G +   L+    S + +KVMG G   K +    V +    ++ +
Sbjct: 238 TNILFIAGGAFDGLDKIIKSRIDNKVMGFGADIKSKTEENVGETLKYILPE 288


>gi|229025270|ref|ZP_04181690.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
 gi|228736023|gb|EEL86598.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           cereus AH1272]
          Length = 238

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 30/233 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +KL  G + D+ + IEV +  S + +     G     +N  +     M    K
Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTK 233


>gi|307264860|ref|ZP_07546422.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920118|gb|EFN50330.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 240

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 96/220 (43%), Positives = 147/220 (66%), Gaps = 26/220 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  LP D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGKTATSN--------------------------TREVFRKKLRDGE 159
           A   AE+R++D ++GK                                RE  R+KLR+GE
Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
           + +  ++IEV DTS+ +       G+    +NL ++F+ +
Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADI 222


>gi|49475381|ref|YP_033422.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae
           str. Houston-1]
 gi|61211490|sp|Q6G3Z2|CLPX_BARHE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49238187|emb|CAF27397.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella
           henselae str. Houston-1]
          Length = 424

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 135/323 (41%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  DIE+A +     N  + G    G   L++  ++++          ++
Sbjct: 95  NHYKRLAHQSKSNDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 150 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 207

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTS 267

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR P+   L+ L+ +    IL+ 
Sbjct: 268 IGFSATVKAPDERCVGEIFRDLEPEDLIKFGLIPEFIGRLPIVATLEDLDVNALVQILSK 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++  +A  A+   +     GAR L+++ME++L + 
Sbjct: 328 PKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKT-----GARGLRSIMEKILLET 382

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L+  + VVI ++ V   
Sbjct: 383 MFELPALEGVQKVVISSDVVDGK 405



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
           I GGA  G+  +     +    G    ++   ++C        E + LI
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLI 295


>gi|328950942|ref|YP_004368277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451266|gb|AEB12167.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus
           hydrothermalis DSM 14884]
          Length = 407

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 56/297 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDMDTVH 234
           SN  + G    G   L+E  ++++          ++ +        E+   RL+      
Sbjct: 111 SNILLIGPTGTGKTLLAETLARLLDVPFAIADATTLTEAGYVGEDVENVVLRLLQAADFD 170

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
            ++ +     GI+++DE DKI  +  G  I   VS EGVQ+ LL ++EG+  +       
Sbjct: 171 VEAAER----GIIYIDEIDKIARKSEGPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 226

Query: 287 -----KYGSINTDHILFIASGAFH---------------------------VSRPAD--- 311
                ++  +NT +ILFI  GAF                               P D   
Sbjct: 227 KHPHQEFIPVNTRNILFILGGAFEGLEAIVKSRVDESPIGFAARKAKDEKPEVIPEDLVK 286

Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
             L+PE  GR PV V L  L++     ILT+ ++ LI QY+EL + EG+ L+FTE+++  
Sbjct: 287 FGLIPEFVGRVPVIVQLDPLDEEALVRILTEPKNALIKQYQELFRMEGVRLEFTEEALRE 346

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +A  A+   +     GAR L+ V+E+ + ++ + A     K +V D E++   +   
Sbjct: 347 IARRAMKRGT-----GARGLRAVIEKAMVELMYEAPGSGVKVIVFDREHLDRPLAAL 398


>gi|309807629|ref|ZP_07701573.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169126|gb|EFO71200.1| putative ATP-dependent protease HslVU, ATPase subunit
           [Lactobacillus iners LactinV 01V1-a]
          Length = 275

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 39/258 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152
            +A +R++  LV                                         + R    
Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 183

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            KL+ G + + E+ + V   +      D+ G   + + +L       +   ++ +  +SV
Sbjct: 184 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMGMDMSSLM----GGLMPKKRVRRTLSV 239

Query: 213 QKCYPELMRDESDRLIDM 230
           +     L+++E+  L+ M
Sbjct: 240 KDARELLIQEEAKNLLIM 257


>gi|72162591|ref|YP_290248.1| ATP-dependent protease ATP-binding subunit ClpX [Thermobifida fusca
           YX]
 gi|71916323|gb|AAZ56225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobifida
           fusca YX]
          Length = 447

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 143/326 (43%), Gaps = 65/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++R G    ++ D+E+A +     N  + G    G   L++  +K++          
Sbjct: 115 HYKRIRSGGDRSRDDDVEIAKS-----NILLLGPTGSGKTLLAQTLAKILKVPFAIADAT 169

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS 
Sbjct: 170 ALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKVARKSENPSITRDVSG 227

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF             
Sbjct: 228 EGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFSGLEKIIEARTGR 287

Query: 305 ---------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL     +PE  GR PV   + +L+++    IL
Sbjct: 288 QGMGFNAVVRSKKELENSDPFRDVMPEDLLKFGMIPEFVGRLPVITSVHNLDRNALIRIL 347

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L+ QY+ L + + + L FT+D+++A+AD A+   +     GAR L+ ++E VL 
Sbjct: 348 TEPRNALVKQYQRLFELDNVELQFTQDALEAIADQAIMRGT-----GARGLRAIIEEVLL 402

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +     ++   V+I  E V  H+
Sbjct: 403 SVMYEVPSRKDVARVIITREAVLEHV 428



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 14/234 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            PREI   LD Y++GQ+ AK+A+++A+ N ++R +   D       E+   NILL+GPTG
Sbjct: 86  KPREIYEFLDSYVVGQEQAKKALSVAVYNHYKRIRSGGDRSRDDDVEIAKSNILLLGPTG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++      
Sbjct: 146 SGKTLLAQTLAKILKVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIY 205

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + A  +    I   + G+       ++                        D +N
Sbjct: 206 IDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTN 265

Query: 179 -FDIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
              I GGA  G+  + E           +  + K  +     + ++M ++  + 
Sbjct: 266 VLFICGGAFSGLEKIIEARTGRQGMGFNAVVRSKKELENSDPFRDVMPEDLLKF 319


>gi|304407482|ref|ZP_07389134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           curdlanolyticus YK9]
 gi|304343433|gb|EFM09275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           curdlanolyticus YK9]
          Length = 418

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 145/345 (42%), Gaps = 67/345 (19%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +  ++A  +         +     +K  D+E+  +     N  + G    G   
Sbjct: 70  ILDSYVIGQESAKKSLAVAVYNHYKRINSQNKLEDVELQKS-----NILLVGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAF----------------------------------HVSRPADLL-----PEIQGR 319
           I  GAF                                   +  P DLL     PE  GR
Sbjct: 243 ICGGAFDGLEQLIKRRIGKKVIGFNTAGDSQKELKPGEYLSMVLPEDLLKFGLIPEFVGR 302

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L++     IL++ ++ L+ QY++L++ + + L+F   +++A+A  A+  N+
Sbjct: 303 LPVISSLEPLDEETLVRILSEPKNALVKQYQKLLEMDNVKLEFEAGALEAIAREAIKRNT 362

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
                GAR L+ ++E ++ ++ +      +  + +I  + V   I
Sbjct: 363 -----GARGLRAIIEGIMLEVMYEVPSRDDVSSCLITEQVVNEKI 402



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I   LD Y+IGQ+ AK+++A+A+ N ++R      L D EL   NILLVGPTG GK
Sbjct: 63  KPKDIRGILDSYVIGQESAKKSLAVAVYNHYKRINSQNKLEDVELQKSNILLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRM--SVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             G +       +   +++     KK+    +      EL   E   ++  + + +  + 
Sbjct: 243 ICGGAF------DGLEQLIKRRIGKKVIGFNTAGDSQKELKPGEYLSMVLPEDLLKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 +  +   + +        +   +  + +    L+E  +V  ++
Sbjct: 297 PEFVGRLPVISSLEPLDEETLVRILSEPKNALVKQYQKLLEMDNVKLEF 345


>gi|309811163|ref|ZP_07704959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
 gi|308434893|gb|EFP58729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus
           sp. Ellin185]
          Length = 413

 Score =  195 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 63/324 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++  E S  +  +E+A +     N  + G    G   L++  ++++          
Sbjct: 92  HYKRVQAAEASGSKDPVEIAKS-----NILLIGPTGCGKTYLAQTMARMLNVPFAIADAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       I+  E  GI+++DE DK+  +     I   VS 
Sbjct: 147 ALTEAG-YVGEDVENILLKLLQASDFDIKRAET-GIIYIDEIDKVARKSENPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF             
Sbjct: 205 EGVQQALLKILEGTAASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEDRKGK 264

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                 +P DL     +PE  GR PV   ++ L++     ILT+
Sbjct: 265 KGLGFGSQLHLPAGGDASMTDVQPEDLMKFGLIPEFIGRLPVITTVEPLDREGMVSILTE 324

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QYK + + +G+ L+FT D++DA+A+ A++  +     GAR L+ ++E VL  +
Sbjct: 325 PKNALVKQYKRMFEIDGVQLEFTPDALDAVAEQAMSRGT-----GARGLRAILEEVLLPV 379

Query: 401 SFSASDLQE-KTVVIDAEYVRLHI 423
            F      +   VVI  E V   I
Sbjct: 380 MFDVPSEDDIDKVVITREVVLDRI 403



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 4/115 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNILLVGPTG 63
            PREI   L  Y+IGQ  AKR++A+A+ N ++R Q           E+   NILL+GPTG
Sbjct: 63  KPREIFDFLREYVIGQDAAKRSLAVAVYNHYKRVQAAEASGSKDPVEIAKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
            GKT +++ +AR+   PF   + T  TE GYVG +VE I+  L+  +   ++ + 
Sbjct: 123 CGKTYLAQTMARMLNVPFAIADATALTEAGYVGEDVENILLKLLQASDFDIKRAE 177


>gi|254477070|ref|ZP_05090456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
 gi|214031313|gb|EEB72148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp.
           R11]
          Length = 422

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 67/324 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               K+L   + +  +I++         SN  + G    G   L++  ++++        
Sbjct: 92  HNHYKRLNHAQKAGNDIEL-------SKSNILLIGPTGCGKTLLAQTLARILDVPFTMAD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
             ++ +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   V
Sbjct: 145 ATTLTEAG-YVGEDVENIILKLLQASEYNVERAQ-RGIVYIDEVDKITRKSENPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF           
Sbjct: 203 SGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQRG 262

Query: 305 -----------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRL 336
                                      P DL     +PE  GR PV   L+ L++     
Sbjct: 263 KGSAMGFGADVREESDAGVGETFKDLEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALIT 322

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT  ++ L+ QY+ L + E   LDFT++++ A+A  A+   +     GAR L++++E +
Sbjct: 323 ILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAKRAIERKT-----GARGLRSILEDI 377

Query: 397 LEDISFSASDLQE-KTVVIDAEYV 419
           L D  F    ++  + VV++ E V
Sbjct: 378 LLDTMFDLPGMESVEKVVVNEEAV 401



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGNDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R     D
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYID 184

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV +    +    I   + G+       ++    +            +      D +N  
Sbjct: 185 EVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 244

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMS----VQKCYPELMRDESDRL 227
            I GGA  G+  + +   K    G    +R      V + + +L  ++  + 
Sbjct: 245 FICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAGVGETFKDLEPEDLLKF 296


>gi|240850275|ref|YP_002971668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
 gi|240267398|gb|ACS50986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           grahamii as4aup]
          Length = 424

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 135/323 (41%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  DIE+A +     N  + G    G   L++  ++++          ++
Sbjct: 95  NHYKRLAHQSKSNDIELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 150 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 207

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTS 267

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR P+   L+ L+ +    IL+ 
Sbjct: 268 IGFSATVKAPDERCVGEIFRDLEPEDLIKFGLIPEFIGRLPIVATLEDLDVNALMQILSQ 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++  +A  A+   +     GAR L+++ME++L + 
Sbjct: 328 PKNALVKQYQRLFEMENVELSFHEDALRVIAKKAIERKT-----GARGLRSIMEKILLET 382

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L+  + VVI ++ V   
Sbjct: 383 MFELPALEGVQKVVISSDVVDGK 405



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQQ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
           I GGA  G+  +     +    G    ++   ++C        E + LI
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLI 295


>gi|297616503|ref|YP_003701662.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144340|gb|ADI01097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 417

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 137/313 (43%), Gaps = 60/313 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  +K++          S+ +    +  D  + L
Sbjct: 102 KLDDVELQKSNILMLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAG-YVGEDVENIL 160

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 161 LKLIQAADYDIEKAEK-GIVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTIAS 219

Query: 286 T-----------KYGSINTDHILFIASGAF---------HVSRPA--------------- 310
                       ++  I+T +ILFI  GAF          V + +               
Sbjct: 220 VPPQGGRKHPHQEFIQIDTSNILFICGGAFEGIDKIIQNRVGQKSMGFGADIKTKKEKKI 279

Query: 311 ---------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE  GR P+ V L +L++S    ILT+ ++ L+ QY++L   
Sbjct: 280 GEILEQILPQDLLKFGLIPEFVGRVPIIVTLDALDESALVRILTEPKNALVRQYQKLFDM 339

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           +G+ L+FT+D++ A+A+ A+  ++     GAR L+ ++E V+ D+ +      + T  V+
Sbjct: 340 DGVNLEFTDDALKAIAEEAMRRST-----GARGLRAIVEDVMLDVMYEIPSRADVTKCVV 394

Query: 415 DAEYVRLHIGDFP 427
             + ++       
Sbjct: 395 TKDVIQKKEKPLL 407



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 8/235 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           ++     P+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   L D EL   NIL++G
Sbjct: 58  EMGDIPKPQEIKDILDQYVIGQEKAKKILAVAVYNHYKRINLGTKLDDVELQKSNILMLG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A       I   + G+       ++    +                   D
Sbjct: 178 IVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQID 237

Query: 176 ISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            SN     G +   ++  +     +              +K    L +     L+
Sbjct: 238 TSNILFICGGAFEGIDKIIQNRVGQKSMGFGADIKTKKEKKIGEILEQILPQDLL 292


>gi|288920829|ref|ZP_06415127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
 gi|288347788|gb|EFC82067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EUN1f]
          Length = 431

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T ++LFI  GAF          + + +                        
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDSSDVFGDIMP 293

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR P+   + +L++     ILT+ ++ L+ QYK L + +G+ LDFT 
Sbjct: 294 EDLLKYGMIPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTT 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +     ++    VI  E V  H+
Sbjct: 354 DALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYDIPSRKDVARAVITREVVLEHV 408

Query: 424 GDFPSETD 431
                  D
Sbjct: 409 NPTLVPRD 416



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPKNILLVG 60
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q         A    EL   NILL+G
Sbjct: 63  KPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGSSSSGDAAKSEVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++                        D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFIVGGAFAGLD 258


>gi|325000574|ref|ZP_08121686.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudonocardia sp.
           P1]
          Length = 429

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 118 SNILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 176

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 177 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 235

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 236 PHQEFIQIDTTNVLFIVAGAFAGLERIIGERVGKSGIGFGADIRSKKDMDPAESFAETLP 295

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR P+   + SL+K     ILT+  + L+ QY++L + +G+ LDF E
Sbjct: 296 EDLIKFGLIPEFIGRLPIVASVTSLDKDALVKILTEPRNALVKQYRKLFEMDGVELDFAE 355

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD+A+   +     GAR L+ +ME VL  + +      +   VV+ A+ V+ ++
Sbjct: 356 EALEAVADLAILRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTAQTVKENV 410

Query: 424 G 424
            
Sbjct: 411 N 411



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 96/244 (39%), Gaps = 16/244 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------EL 51
           +KL     P EI   LD+Y++GQ D KR +++A+ N ++R Q    LR          E+
Sbjct: 56  VKLDELPKPAEIHDFLDQYVVGQPDTKRTLSVAVYNHYKRIQAGERLRASGNGDGDGIEI 115

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NIL++GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A 
Sbjct: 116 AKSNILMLGPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 175

Query: 112 NIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             V+ +       DEV + A  +    I   + G+       ++                
Sbjct: 176 YDVKRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 235

Query: 167 IEVADTSSDISN--FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
                   D +N  F + G  +     + E   K                          
Sbjct: 236 PHQEFIQIDTTNVLFIVAGAFAGLERIIGERVGKSGIGFGADIRSKKDMDPAESFAETLP 295

Query: 225 DRLI 228
           + LI
Sbjct: 296 EDLI 299


>gi|256847017|ref|ZP_05552463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715681|gb|EEU30656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 416

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 143/332 (43%), Gaps = 68/332 (20%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  +  +  +  DT    SN  + G    G   L++  ++++          ++ +    
Sbjct: 94  KRVNAMVTGDNNDTELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + ++ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENIILKLLQAADYDVERAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------------V 306
            ++EG+  +            ++  ++T +ILFI  GAF                     
Sbjct: 212 KILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIVGGAFDGIESIVKERLGDKTIGFGTD 271

Query: 307 SRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
           S+ AD                    L+PE  GR PV   L+ L++ D   ILT+ ++ L+
Sbjct: 272 SKEADQVNEKNILQHVIPEDLLKFGLIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALV 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+EL++ +G  L FT+ ++  +A +A+  N+     GAR L++++E V+ D+ F    
Sbjct: 332 KQYQELIRLDGSKLRFTDGALREMAKLAIARNT-----GARGLRSIIEGVMRDVMFDLPS 386

Query: 407 LQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437
            Q+   VVID   V  H            ++L
Sbjct: 387 RQDVSEVVIDKNCVEHHTEP--------RYVL 410



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           +P EI+ +LD Y+IGQ +AK+ +++A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPAEIMKQLDDYVIGQGEAKKTLSVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVERAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D  N 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNI 242

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 243 LFIVGGAFDGIE 254


>gi|167766383|ref|ZP_02438436.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1]
 gi|167711974|gb|EDS22553.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1]
          Length = 333

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 140/387 (36%), Gaps = 79/387 (20%)

Query: 43  LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
           +  D   EL   NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I
Sbjct: 1   MGGDSDVELQKSNILMLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENI 60

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
           +  ++  A   +        R Q  I   + I         TS TR+V  + ++   +  
Sbjct: 61  LLKIIQAADYDID-------RAQCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKI 113

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
             I+  VA            G        +    S ++               +  L + 
Sbjct: 114 --IEGTVASVPPQ------GGRKHPHQEFIQIDTSNIL---------FICGGAFDGLEK- 155

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
                I    + + SI                      G  +   +E    +LL  V   
Sbjct: 156 -----IIESRIGKKSIGF--------------------GADVFGQKETDLGELLRQVLPE 190

Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
               K+G I      FI     +VS                  L  L++     IL + +
Sbjct: 191 DF-VKFGLI----PEFIGRVPVNVS------------------LNPLDEEALVRILKEPK 227

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           S L+ QY+ L + +G+ L F +D++ A+A  A+   +     GAR L+ +ME V+ D+ +
Sbjct: 228 SALVKQYQRLFEMDGVKLTFDDDALIAIAKKALERKT-----GARGLRAIMEDVIMDLMY 282

Query: 403 SASDLQE-KTVVIDAEYVRLHIGDFPS 428
                 +    +I  + V         
Sbjct: 283 EIPSQTDVSECLITKDVVEGKEKPMIE 309


>gi|218512710|ref|ZP_03509550.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli 8C-3]
          Length = 145

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/144 (77%), Positives = 127/144 (88%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
             FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL   LRDE+MPKNIL++GPTGV
Sbjct: 2   TTFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGV 61

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ 
Sbjct: 62  GKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQA 121

Query: 125 QASINAEERILDALVGKTATSNTR 148
           +A ++AEER+LDALVG TA+  TR
Sbjct: 122 KAHVSAEERVLDALVGTTASPATR 145


>gi|228980436|ref|ZP_04140746.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|228779256|gb|EEM27513.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus
           thuringiensis Bt407]
 gi|326941598|gb|AEA17494.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 138/233 (59%), Gaps = 30/233 (12%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E    +V
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120

Query: 123 REQASINAEERILDALVGKTAT------------------------------SNTREVFR 152
           +++A   A +R+++ LV                                      R+   
Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           +KL  G + ++ + IEV +  S + +     G     +N  +     M    K
Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTK 233


>gi|198429767|ref|XP_002119878.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX-like, mitochondrial [Ciona intestinalis]
          Length = 393

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 146/372 (39%), Gaps = 56/372 (15%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+++GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 36  LEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 95

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V  +      EQ  +  +E  +D +         R+V  + ++ G +  K ++  V 
Sbjct: 96  GGHVERA------EQGIVFLDE--VDKISSVPGIHQLRDVGGEGVQQGLL--KMLEGTVV 145

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           +     S         V   N+  + S       K   R   +K     +  ++      
Sbjct: 146 NVPERNSRKLRGDSVVVDTTNILFVASGAFNGLEKFISRRMNEKSLGFSLHSKTST-TKK 204

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D + + ++   +      +                   E  +RD L     +S   ++G 
Sbjct: 205 DEIFKQTLGFEQQLLKSAI------------------EENKERDELLKHTEASDLVEFGM 246

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I                      PE  GR P+ V L SL+      ILT+  + ++ Q++
Sbjct: 247 I----------------------PEFVGRLPITVPLHSLSNEHLTKILTEPRNAVVPQFE 284

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L   +   L  T  ++ A+AD+A+   +     GAR L+++ME+++ D  +        
Sbjct: 285 ALFNMDKSDLAITPSALRAIADLALERKT-----GARGLRSIMEQLMLDPMYDVPGSDII 339

Query: 411 TVVIDAEYVRLH 422
            V ID + VR  
Sbjct: 340 GVCIDDDVVRGK 351



 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
           +     S+ R+      ++     K ++ E +  + + SN  + G    G   L++  ++
Sbjct: 1   MPHKVPSHGRDESATSTKNDAGKMKNLEDESSPITLEKSNIVMLGPTGSGKTLLAQTLAR 60

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
            +          ++ +        ES   +L+         ++  E  GIVFLDE DKI 
Sbjct: 61  CLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD---AGGHVERAEQ-GIVFLDEVDKIS 116

Query: 257 A-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS----------INTDHILFIASGAFH 305
           +         V  EGVQ+ LL ++EG+ V+    +          ++T +ILF+ASGAF+
Sbjct: 117 SVPGIHQLRDVGGEGVQQGLLKMLEGTVVNVPERNSRKLRGDSVVVDTTNILFVASGAFN 176


>gi|312898488|ref|ZP_07757878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           micronuciformis F0359]
 gi|310620407|gb|EFQ03977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera
           micronuciformis F0359]
          Length = 417

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 64/338 (18%)

Query: 136 DALVGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
           D ++G+ A   T  V      +  + +  +   +V    S+I      G    G   L++
Sbjct: 75  DYVIGQEAAKKTLSVAVYNHYKRLQSNSNKDKDDVELQKSNIVMV---GPTGSGKTLLAQ 131

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
             +K +          S+ +    +  D  + L+ +       I   E  GI+++DE DK
Sbjct: 132 TLAKFLDVPFAIADATSLTEAG-YVGEDVENCLLKLIQAADFDIAKAE-RGIIYIDEIDK 189

Query: 255 IVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIAS 301
           I  +     I   VS EGVQ+ LL ++EG+  +            +   I+T +ILFI  
Sbjct: 190 IARKSENPSITRDVSGEGVQQALLKILEGTEANVPPQGGRKHPHQEMLQIDTTNILFICG 249

Query: 302 GAF--------------HVSRPAD-------------------------LLPEIQGRFPV 322
           GAF              ++   AD                         L+PE+ GR PV
Sbjct: 250 GAFDGIDKTIRSRRTEKNMGFGADIHKKNEESVEELLKEIIPTDLQKFGLIPELIGRLPV 309

Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382
            V L  L++     ILT+ ++ L+ QY++++  + + L FT+D++ A+A+ A+   +   
Sbjct: 310 LVTLNPLDEEAMIHILTEPKNALVKQYQKMLGMDDVKLTFTDDALKAIAEEALRRKT--- 366

Query: 383 DIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             GAR L++++ER++ D+ F A   ++ +  ++  E V
Sbjct: 367 --GARGLRSIIERIMLDVMFDAPSRKDVEECIVTKESV 402



 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 13/239 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---DELMPKNILL 58
           ++    +P EI   LD Y+IGQ+ AK+ +++A+ N ++R Q  ++      EL   NI++
Sbjct: 59  EMKELPTPHEIKKNLDDYVIGQEAAKKTLSVAVYNHYKRLQSNSNKDKDDVELQKSNIVM 118

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VGPTG GKT +++ LA+    PF   + T  TE GYVG +VE  +  L+  A   + ++ 
Sbjct: 119 VGPTGSGKTLLAQTLAKFLDVPFAIADATSLTEAGYVGEDVENCLLKLIQAADFDIAKAE 178

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++      +                
Sbjct: 179 RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTEANVPPQGGRKHPHQEMLQ 238

Query: 174 SDISNFDIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            D +N     G +   ++          +   G+   KK   SV++   E++  +  + 
Sbjct: 239 IDTTNILFICGGAFDGIDKTIRSRRTEKNMGFGADIHKKNEESVEELLKEIIPTDLQKF 297


>gi|289523085|ref|ZP_06439939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503628|gb|EFD24792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 427

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 68/337 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               K++  G+    +++++        SN  + G    G   L++  ++++        
Sbjct: 101 HNHYKRIFKGKKGKDDVEVQK-------SNILLLGPTGCGKTLLAQTLAQMLNVPFAIAD 153

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
             ++ +    +  D  + L+ +       + + E  GIV++DE DKI  +     I   V
Sbjct: 154 ATTLTEAG-YVGEDVENILVRLLQSCDYDVALAE-RGIVYIDEIDKIARKSYSPSITRDV 211

Query: 267 SREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFH---------- 305
           S EGVQ+ LL L+EG+  +             +  ++T +ILFI  GAF           
Sbjct: 212 SGEGVQQGLLRLLEGTVSNVPPKGGRKHPYQDFIQVDTSNILFICGGAFDGIENIIAKRI 271

Query: 306 ------------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRL 336
                                     +P DL     +PE  GR PV V L+ L++     
Sbjct: 272 NKRVIGFGGDIIGKKVEASWKILKEVQPEDLMMYGFIPEFIGRIPVIVPLEGLHEESLVH 331

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + +++L+ QY+EL   EG+ L+FTE ++ A+A  A    +     GAR L+++ME +
Sbjct: 332 ILLEPKNSLVKQYQELFSYEGVELEFTEAALKAIAHQAQERKT-----GARGLRSIMENL 386

Query: 397 LEDISFSASDLQEK--TVVIDAEYVRLHIGDFPSETD 431
           + DI +   ++  +   V I  E V           D
Sbjct: 387 MLDIMYELPNIAGEVAKVKITGECVLEGASPIYISRD 423



 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 10/238 (4%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57
           M   F    P EI S LD+Y++GQ+ AK+ +++A+ N ++R       +D  E+   NIL
Sbjct: 66  MTQNFVLPKPSEIKSYLDQYVVGQEYAKKVLSVAVHNHYKRIFKGKKGKDDVEVQKSNIL 125

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+      V  +
Sbjct: 126 LLGPTGCGKTLLAQTLAQMLNVPFAIADATTLTEAGYVGEDVENILVRLLQSCDYDVALA 185

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            R     DE+ + A  +    I   + G+        +    + +               
Sbjct: 186 ERGIVYIDEIDKIARKSYSPSITRDVSGEGVQQGLLRLLEGTVSNVPPKGGRKHPYQDFI 245

Query: 173 SSDISNF-DIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             D SN   I GGA  GI N +++  +K +       I   V+  +  L   + + L+
Sbjct: 246 QVDTSNILFICGGAFDGIENIIAKRINKRVIGFGGDIIGKKVEASWKILKEVQPEDLM 303


>gi|308446478|ref|XP_003087188.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
 gi|308260041|gb|EFP03994.1| hypothetical protein CRE_23295 [Caenorhabditis remanei]
          Length = 436

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 73/306 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +              D++ + + 
Sbjct: 113 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEA--------GYVGEDVENIIQK 164

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S   
Sbjct: 165 LLQKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPP 224

Query: 287 ---------KYGSINTDHILFIASGAF--------------------HVSRPAD------ 311
                    ++  ++T +ILFI  GAF                    +V    D      
Sbjct: 225 QGGRKHPQQEFIQVDTANILFICGGAFSGLEKVVQQRQEKGGIGFTANVKNKDDSKKVSE 284

Query: 312 --------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         L+PE  GR PV   L+ L++     ILT+ ++ L  QY+ L + E 
Sbjct: 285 LFRQVEAADLVKFGLIPEFIGRLPVIATLEELDQEALMQILTEPKNALTRQYQYLFEMEN 344

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L F + ++ A+A  A+  N+     GAR L++++E VL +  +      +  TV+I+ 
Sbjct: 345 VDLLFEDSALRAIAKKALERNT-----GARGLRSILENVLLETMYDLPSRSDIGTVIINE 399

Query: 417 EYVRLH 422
             +   
Sbjct: 400 AVINDK 405



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 13/234 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R +            E+   NILL+GPT
Sbjct: 62  KPHEIRAALDQYVIGQDTAKKTLSVAVYNHYKRLKVSQTGHKPKDAVEIAKSNILLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LARL   PF   + T  TE GYVG +VE II+ L+  A   V ++++   
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKADYDVEKAQKGII 181

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ +    +    I   + G+       ++    +            +      D +
Sbjct: 182 YIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQVDTA 241

Query: 178 NFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           N     G +   L            +G     K +   +K      + E+  L+
Sbjct: 242 NILFICGGAFSGLEKVVQQRQEKGGIGFTANVKNKDDSKKVSELFRQVEAADLV 295


>gi|167628598|ref|YP_001679097.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Heliobacterium modesticaldum Ice1]
 gi|238687890|sp|B0TFI7|CLPX_HELMI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167591338|gb|ABZ83086.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Heliobacterium modesticaldum Ice1]
          Length = 420

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 60/317 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 102 KIDDIELQKSNIIMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 160

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 161 LKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 219

Query: 286 T-----------KYGSINTDHILFIASGAFH--------------VSRPAD--------- 311
                       ++  ++T +ILFI  GAF               +   AD         
Sbjct: 220 VPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKLIMNRIGKKTMGFNADIKGKQEKKI 279

Query: 312 ----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE  GR PV V L +L++     ILT+ ++ L+ QY++  + 
Sbjct: 280 GETLREILPVDLLKFGLIPEFVGRLPVIVTLDALDEDALVRILTEPKNALVKQYQKFFEL 339

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           + + L+FT+D++ A+A  A+  N+     GAR L+ ++E V+ D+ +      + T   +
Sbjct: 340 DQVQLEFTDDALRAIAQEAIKRNT-----GARGLRAILEEVMLDVMYDIPSRNDVTKCAV 394

Query: 415 DAEYVRLHIGDFPSETD 431
             E +          +D
Sbjct: 395 TKEVILKQKEPVLVTSD 411



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 28/268 (10%)

Query: 2   KLTFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNI 56
           + TF+      P+EI   LD+Y+IGQ+ AK+A+++A+ N ++R  L + + D EL   NI
Sbjct: 54  ENTFDLGDVPKPKEIREILDQYVIGQEQAKKALSVAVYNHYKRINLGSKIDDIELQKSNI 113

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V +
Sbjct: 114 IMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEK 173

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           + +     DE+ + A  +    I   + G+       ++    +                
Sbjct: 174 AEKGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 233

Query: 172 TSSDISNFDIPGGASVGILNLSEL---------FSKVMGSGRKKKIRMSVQKCYPE---- 218
              D +N     G +   +    +         F+  +   ++KKI  ++++  P     
Sbjct: 234 IQLDTTNILFICGGAFDGIEKLIMNRIGKKTMGFNADIKGKQEKKIGETLREILPVDLLK 293

Query: 219 --LMRDESDRL---IDMDTVHRDSIQMV 241
             L+ +   RL   + +D +  D++  +
Sbjct: 294 FGLIPEFVGRLPVIVTLDALDEDALVRI 321


>gi|242240291|ref|YP_002988472.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya dadantii
           Ech703]
 gi|242132348|gb|ACS86650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech703]
          Length = 424

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 143/374 (38%), Gaps = 74/374 (19%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +  GG  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 EANGGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 222

Query: 287 -----------KYGSINTDHILFIASGAFH------------------------------ 305
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDRIIEQRTDTGRGIGFNATVKGSTQKAT 282

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   LK L++     IL + ++ L  QY+ L K
Sbjct: 283 EGELLGHVEPGDLIKFGLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFK 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++ A+A  A+   +     GAR L++++E  L D  +    L+    VV
Sbjct: 343 LEGVDLEFRDEALTAIAKKAMIRKT-----GARGLRSIVEAALLDTMYDLPSLENVDKVV 397

Query: 414 IDAEYVRLHIGDFP 427
           ID   +        
Sbjct: 398 IDESVISGQSEPLL 411



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   A+   EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGEANGGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG 227


>gi|251798424|ref|YP_003013155.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paenibacillus
           sp. JDR-2]
 gi|247546050|gb|ACT03069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. JDR-2]
          Length = 418

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 135/309 (43%), Gaps = 60/309 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  +K++          S+ +    +  D  + L
Sbjct: 101 KIEDVELQKSNILLVGPTGSGKTLLAQTMAKILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAE-RGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLESLIKRRIGKKVIGFSSTGEVQKDLKP 278

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                +  P DL     +PE  GR PV   L+ L+++    IL++ ++ L+ QY++L++ 
Sbjct: 279 GEYLSMVLPEDLLKFGLIPEFVGRLPVISTLEPLDEAALMRILSEPKNALVKQYQKLLEM 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + LDF   +++A+A  A+  N+     GAR L+ ++E ++ ++ +      +  T +I
Sbjct: 339 DNVKLDFEPAALEAIAKEAIKRNT-----GARGLRAIIEGIMLEVMYEVPSRDDVSTCLI 393

Query: 415 DAEYVRLHI 423
             + V+  I
Sbjct: 394 TEKNVKDKI 402



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I + LD Y+IGQ+ AK+++++A+ N ++R    + + D EL   NILLVGPTG GK
Sbjct: 63  KPKDIRAILDSYVIGQEFAKKSLSVAVYNHYKRINSQSKIEDVELQKSNILLVGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|225850860|ref|YP_002731094.1| ATP-dependent protease ATP-binding subunit ClpX [Persephonella
           marina EX-H1]
 gi|225645554|gb|ACO03740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Persephonella
           marina EX-H1]
          Length = 411

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 67/322 (20%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
             +D ++++E        SN  + G    G   L+   +K++          ++ +    
Sbjct: 98  RYTDDDVELEK-------SNILLIGPTGSGKTLLARTLAKILNVPFAIADATNITEAG-Y 149

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDL 275
           +  D    L+ +       I+  E  GI+++DE DKI  +   N      VS EGVQ+ L
Sbjct: 150 VGEDVESILVRLVQAADYDIEKAEK-GIIYIDEIDKIAKKSGENPSITRDVSGEGVQQAL 208

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSRPA----- 310
           L ++EG+  +            ++  ++T +ILFI  GAF          + + +     
Sbjct: 209 LKILEGTVANIPPQGGRKHPHQEFIQLDTSNILFILGGAFVGLEDIIKQRIGKKSIGFAT 268

Query: 311 ------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                    L+PE  GR PV   L  L++     +LT+ ++ LI
Sbjct: 269 QIRSKEEEEGNILSKVRVEDLIKFGLIPEFIGRIPVVATLDELDEDALVRVLTEPKNALI 328

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L+  +G+ L+FT+D+I A+A  A++  +     GAR L+ ++E ++ D+ +    
Sbjct: 329 KQYKKLLSMDGVELEFTDDAIRAIAKEAIDRKT-----GARGLRAIVEEIMLDVMYEIPQ 383

Query: 407 LQE-KTVVIDAEYVRLHIGDFP 427
            Q  K VVID + V        
Sbjct: 384 AQGVKKVVIDKDVVLKKKQPVM 405



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILL 58
           +L    +P EI  +LD Y+IGQ+ AK+ +++A+ N ++R   P    D   EL   NILL
Sbjct: 54  ELKSLPTPAEIKKKLDEYVIGQERAKKILSVAVYNHYKRIFHPGRYTDDDVELEKSNILL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++R LA++   PF   + T  TE GYVG +VE I+  LV  A   + ++ 
Sbjct: 114 IGPTGSGKTLLARTLAKILNVPFAIADATNITEAGYVGEDVESILVRLVQAADYDIEKAE 173

Query: 119 R-----DEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +     DE+ + A  + E   I   + G+       ++    + +               
Sbjct: 174 KGIIYIDEIDKIAKKSGENPSITRDVSGEGVQQALLKILEGTVANIPPQGGRKHPHQEFI 233

Query: 173 SSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
             D SN   I GGA VG+ ++ +        G   +IR   ++    L +   + LI   
Sbjct: 234 QLDTSNILFILGGAFVGLEDIIKQRIGKKSIGFATQIRSKEEEEGNILSKVRVEDLIKFG 293

Query: 232 TVHRDSIQMVENYGIVFLDEFD 253
            +      +     +  LDE D
Sbjct: 294 LIPE---FIGRIPVVATLDELD 312


>gi|270291413|ref|ZP_06197635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
           acidilactici 7_4]
 gi|304385126|ref|ZP_07367472.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270280259|gb|EFA26095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus
           acidilactici 7_4]
 gi|304329320|gb|EFL96540.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 421

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 132/315 (41%), Gaps = 59/315 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D +        SN  + G    G   L++  +K++          ++ +    +  D  +
Sbjct: 107 DAKDDGPELQKSNISLIGPTGSGKTFLAQSLAKILNVPFAIADATTLTEAG-YVGEDVEN 165

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 166 ILLKLLQNADYDVEAAE-HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTI 224

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
            +            ++  INT +ILFI  GAF                            
Sbjct: 225 ANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTSLDE 284

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL     +PE  GR P+   L+ L + D   ILT+ ++ L+ QYK L+ 
Sbjct: 285 SKSLMQQVIPEDLLKFGLIPEFIGRLPILTALEKLTEEDLVRILTEPKNALVKQYKALLA 344

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            +G+ L FT  ++ A+A+ A++ N+     GAR L++++E V+ DI F          V 
Sbjct: 345 LDGVELKFTPQALHAIAEQAISRNT-----GARGLRSIIENVMRDIMFEIPSRDNVAKVT 399

Query: 414 IDAEYVRLHIGDFPS 428
           ++ + V   +     
Sbjct: 400 VNKKTVVDGVEPEVE 414



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----DLRDELMPKNI 56
           ++T   +P EIV  LD+Y+IGQ++AK+ +++A+ N ++R    A     D   EL   NI
Sbjct: 61  EITNIPTPAEIVDYLDQYVIGQEEAKKTLSVAVYNHYKRINKMAQADAKDDGPELQKSNI 120

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 121 SLIGPTGSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVEA 180

Query: 117 SR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +       DE+ + A  +    I   + G+       ++    + +          +   
Sbjct: 181 AEHGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEF 240

Query: 172 TSSDISNFDIPGGASVGILN 191
              + +N     G +   + 
Sbjct: 241 IQINTTNILFIVGGAFDGIE 260


>gi|86739914|ref|YP_480314.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. CcI3]
 gi|123751353|sp|Q2JDQ7|CLPX_FRASC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86566776|gb|ABD10585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp.
           CcI3]
          Length = 428

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 141/334 (42%), Gaps = 63/334 (18%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ G  S      EV    S   N  + G    G   L++  ++++          
Sbjct: 92  HYKRVQAGGSSGDGSKGEVELAKS---NILLLGPTGCGKTLLAQTLARMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF          + +
Sbjct: 207 EGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGK 266

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               ++PE  GR PV   + +L++     IL
Sbjct: 267 KSLGFRAVLHGKDDPDGSDVFGDIMPEDLLKYGMIPEFIGRLPVITSVSNLDREALIRIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ L+ QYK L + + + LDFT D+++A+AD A+   +     GAR L+ +ME VL 
Sbjct: 327 TEPKNALVRQYKRLFELDSVDLDFTSDALEAIADQAILRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
            + +     ++   VV+  E V  H+       D
Sbjct: 382 SVMYDIPSRKDVARVVVTREVVLEHVNPTLVPRD 415



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q        +    EL   NILL+GP
Sbjct: 63  KPREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSSGDGSKGEVELAKSNILLLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR--- 118
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 123 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 182

Query: 119 --RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A  +    I   + G+       ++                        D 
Sbjct: 183 IYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDT 242

Query: 177 SNFDIPGGASVGILN 191
           +N     G +   L+
Sbjct: 243 TNVLFIVGGAFAGLD 257


>gi|222824391|ref|YP_002575965.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX
           [Campylobacter lari RM2100]
 gi|222539612|gb|ACM64713.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX
           [Campylobacter lari RM2100]
          Length = 411

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 56/305 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++E  DT    SN  + G    G   L++  ++ +          S+ +    +  D  +
Sbjct: 98  NLEDDDTELAKSNILLVGPTGSGKTLLAQTLARFLDVPIAICDATSLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       +Q  +  GI+F+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 157 ILTRLLQAADGDVQRAQK-GIIFIDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSL 215

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILF+  GAF                            
Sbjct: 216 VNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGISDIIKRKLGDNVMGFFSDDKKSEKE 275

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE+ GR  V   L+ L++     ILT+ ++ +I QY++L   +
Sbjct: 276 ALLQKLEPDDLVHFGLIPELIGRLHVLASLEELDEESMVRILTEPKNAIIKQYQKLFAID 335

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            + L F +D++  +A +++   +     GAR L++++E ++ D+ F   +    ++VI  
Sbjct: 336 NVELKFEDDALREIAKLSLERKT-----GARGLRSIIEEMMVDLMFDLPEYNGYSIVITK 390

Query: 417 EYVRL 421
           E ++ 
Sbjct: 391 EVIKE 395



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 10/232 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTG 63
           + +P+E+ + LD+Y+IGQ  AK+  ++ + N ++R       D   EL   NILLVGPTG
Sbjct: 59  DITPKELKAYLDKYVIGQDRAKKIFSVGVYNHYKRLFRSNLEDDDTELAKSNILLVGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 119 SGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIIF 178

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A +     I   + G+       ++    L +                 D +N
Sbjct: 179 IDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQIDTTN 238

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              + GGA  GI ++ +        G     + S ++    L + E D L+ 
Sbjct: 239 ILFVCGGAFDGISDIIKRKLGDNVMGFFSDDKKSEKEA--LLQKLEPDDLVH 288


>gi|71900577|ref|ZP_00682704.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1]
 gi|71729634|gb|EAO31738.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1]
          Length = 426

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 158/383 (41%), Gaps = 85/383 (22%)

Query: 107 VDVAINIVRESRRDEVR-EQASINAEERILDALV----GKTATSNTREV-FRKKLRDGEI 160
           V++  +I+RE   ++ +  ++S+   + IL+ L     G+     T  V      +  E 
Sbjct: 44  VELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIES 103

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             K  DIE+A +     N  + G    G   L+E  ++++          ++ +      
Sbjct: 104 RHKNDDIELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA----- 153

Query: 221 RDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                   D++ + +  +Q  +       +GIV++DE DKI  +     I   VS EGVQ
Sbjct: 154 ---GYVGEDVENIIQKLLQKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQ 210

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFHV--------------- 306
           + LL L+EG+  S            ++  ++T +ILFI  GAF                 
Sbjct: 211 QALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRCTEVGGI 270

Query: 307 ---------------------SRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR PV   L  L++S    ILT+
Sbjct: 271 GFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELDESALVKILTE 330

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ +  Q+K+L + E + L+F +D++ A+A  A+   +     GAR L+T++E VL D 
Sbjct: 331 PKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKT-----GARGLRTIVELVLLDT 385

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            +     +    VV+D   +   
Sbjct: 386 MYELPSQEGISKVVVDESVIENK 408



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQHGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDS 237
             G +   L+  + +  ++V G G   K++   S +     L   E + LI    +    
Sbjct: 248 ICGGAFAGLDKVIQQRCTEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPE-- 305

Query: 238 IQMVENYGIVFLDEFD-----KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             +     +  LDE D     KI+              + +    L E  +V  ++  
Sbjct: 306 -FVGRLPVVATLDELDESALVKILTEPKN--------AITKQFKKLFEMENVELEFRQ 354


>gi|170597016|ref|XP_001902980.1| ATP-dependent Clp protease, ATP-binding subunit [Brugia malayi]
 gi|158588999|gb|EDP28174.1| ATP-dependent Clp protease, ATP-binding subunit, putative [Brugia
           malayi]
          Length = 571

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 156/383 (40%), Gaps = 66/383 (17%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           R     D+   L   NILL+GP+GVGKT I++ LAR+   P    + T  T+ GYVG +V
Sbjct: 242 RPLPENDVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDV 301

Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159
           E +++ LV  A   V  +++  V            LD +    A  N        ++   
Sbjct: 302 ESVVQKLVQNAGGNVERAQQGIV-----------FLDEIDKIAAAHN--------VQSHA 342

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
             D   +         +    +   +S   ++  + F +V  +     I       +  L
Sbjct: 343 FRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQVDTTD----ILFVASGAFTAL 398

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            R    RL       + ++ +    G+  + + DK+ A  S     + R+  Q DL+   
Sbjct: 399 DRIVGKRL------DKKTLGLGAKSGMQRITDDDKLEAAISKKRDDLLRQADQGDLISF- 451

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                           ++PE+ GRFPV V   SL+K     +LT
Sbjct: 452 -------------------------------GIVPELVGRFPVIVPFHSLDKGMLVRVLT 480

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  ++L+ Q K     +G  L F+ D++D +A +A+   +     GAR L++++E+VL +
Sbjct: 481 EPTNSLLAQKKLEFAMDGADLSFSSDALDEIAALALERKT-----GARALRSIVEKVLLE 535

Query: 400 ISFSASDLQEKTVVIDAEYVRLH 422
             F+      ++V I+ E V+  
Sbjct: 536 AKFTVPGSDIESVHINRECVQGK 558



 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN 55
           P+EI   L++YIIGQ+ AK+ +++ +   + R     +        N
Sbjct: 145 PKEIYGFLNKYIIGQEQAKKTLSVGVYQHYLRLYHNIENNVSSPAMN 191


>gi|260549097|ref|ZP_05823318.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
 gi|260407825|gb|EEX01297.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624]
          Length = 437

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 133/330 (40%), Gaps = 78/330 (23%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L+ G+      D+E+A +     N  + G    G   L++  ++++          
Sbjct: 91  HYKRLKVGQSGHVSKDVEIAKS-----NILLIGPTGSGKTLLAQTLARLLDVPFAMADAT 145

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
           ++ +              D++ + +  +Q  +        GI+++DE DKI  +     I
Sbjct: 146 TLTEA--------GYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRKSENPSI 197

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF       
Sbjct: 198 TRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIV 257

Query: 305 ----------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNK 331
                                           P DL     +PE  GR PV   L+ L++
Sbjct: 258 QQRQEKGGIGFTADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPVIATLEELDE 317

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
                ILT+ ++ L  QY+ L   E + L F + ++ A+A  A+  N+     GAR L++
Sbjct: 318 EALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNT-----GARGLRS 372

Query: 392 VMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           ++E VL +  +      +  TV I+   + 
Sbjct: 373 ILENVLLETMYDLPSRTDVGTVFINEAVIN 402



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 12/233 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P EI + L++Y+IGQ  AK+ +++A+ N ++R ++          E+   NILL+GPTG
Sbjct: 62  KPHEIRAALNQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++    
Sbjct: 122 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIY 181

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ +    +    I   + G+       ++    +            +      D SN
Sbjct: 182 IDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSN 241

Query: 179 FDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                G +   L            +G     K +   +K      + E   L+
Sbjct: 242 ILFICGGAFAGLEKIVQQRQEKGGIGFTADVKKKDESKKIAELFRQVEPTDLV 294


>gi|115377937|ref|ZP_01465121.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365042|gb|EAU64093.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella
           aurantiaca DW4/3-1]
          Length = 142

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/142 (46%), Positives = 102/142 (71%)

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
           +LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+  D   IL +  ++LI QY  L+ T
Sbjct: 1   MLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILREPRNSLIRQYTALLAT 60

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           EG+ L+FT+D+++ +A +A   N    +IGARRL TV+ER+L+++SF AS++ +K + +D
Sbjct: 61  EGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEVSFGASEMGQKALKVD 120

Query: 416 AEYVRLHIGDFPSETDMYHFIL 437
           A YVR  +     + D+  +IL
Sbjct: 121 AAYVRERLASIVQDEDLSRYIL 142


>gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
 gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis
           bv. 4 str. 40]
          Length = 424

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFIMADATTLTEAG-YVGEDVENIILKLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L+      ILT+ ++ L+ QY+ L   E + L F +
Sbjct: 292 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHD 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           D++ A+A+  V   +     GAR L+++ME++L D  F    L+  + VVI  + V 
Sbjct: 352 DALRAIANKVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVD 403



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PFI  + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 182 PGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       E  S   G+  K      + + + EL  ++  + 
Sbjct: 247 ICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKF 297


>gi|212638446|ref|YP_002314966.1| ATP-dependent protease ATP-binding subunit ClpX [Anoxybacillus
           flavithermus WK1]
 gi|226706575|sp|B7GH25|CLPX_ANOFW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|212559926|gb|ACJ32981.1| ATP-dependent Clp protease ATP-binding subunit (class III
           heat-shock protein) [Anoxybacillus flavithermus WK1]
          Length = 420

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 141/347 (40%), Gaps = 65/347 (18%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A            +    + K  D+E+A +     N  + G    G   
Sbjct: 70  ILDEYVIGQDEAKKALSVAVYNHYKRINSNSKIDDVELAKS-----NILMIGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  ++++          S+ +    +  D  + L+ +       I+  E  GI+++DE
Sbjct: 125 LAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDIERAEK-GIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAFHVSRP-------------------------------------ADLLPEIQGRFP 321
           I  GAF    P                                       L+PE  GR P
Sbjct: 243 ICGGAFDGLEPIIKRRLGKKVIGFSSDAQAEVEEKDLLSKVLPEDLLKFGLIPEFVGRLP 302

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           V   L+ L++     IL   ++ L+ QY+++++ + + L+F E+++  +A  A+   +  
Sbjct: 303 VITSLQPLDEDALVDILVKPKNALVKQYEKMLELDDVELEFEEEALREIAKRAIERKT-- 360

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
              GAR L++++E ++ D+ F     ++ +  +I AE VR       
Sbjct: 361 ---GARGLRSIIEGIMLDVMFELPSREDVQKCIITAETVRGEKAPLL 404



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ +AK+A+++A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPKEIRDILDEYVIGQDEAKKALSVAVYNHYKRINSNSKIDDVELAKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   L 
Sbjct: 243 ICGGAFDGLE 252


>gi|268562864|ref|XP_002638688.1| Hypothetical protein CBG11883 [Caenorhabditis briggsae]
          Length = 572

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 185/480 (38%), Gaps = 121/480 (25%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD++++GQ+ AK+ +A+ +   +RR +         +      +  T    T 
Sbjct: 114 PTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHN-------IESGASSIYQTHAQ-TQ 165

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            +    +  G                      ++ R        +  +        +   
Sbjct: 166 TASGAGKSDG-------------------GDSKMPR-------GVFYQDEM-----RLGQ 194

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
            A   + ++L+ + + +      ++  R+   + + +  +      + SN  + G + VG
Sbjct: 195 MASSELRNSLMQQQSNNQPPSTQQQSSRNAPPTFRSLPEKEQAVRLEKSNILLVGPSGVG 254

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV------E 242
              L++  ++V+         + +  C    M        D+++V +  +Q         
Sbjct: 255 KTFLTQTLARVLD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKA 306

Query: 243 NYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             GIVFLDE DKI A + G+      VS EGVQ  LL LVEG+ V+ K G          
Sbjct: 307 QQGIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQ 366

Query: 290 -SINTDHILFIASGAFH-----VSRPAD-------------------------------- 311
             I+T  ILFIASGAF      V R  D                                
Sbjct: 367 VQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELL 426

Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + 
Sbjct: 427 GKADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVD 486

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F+ ++++ +A +A+   +     GAR L++++E  L +  F+      ++V +  E +
Sbjct: 487 LSFSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFTVPGSDIESVHVSREAI 541


>gi|297544143|ref|YP_003676445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841918|gb|ADH60434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 424

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 129/299 (43%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          S+ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQIDTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHIMP 286

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L  L+K D   ILT+ ++ L+ QY++L + +G+ L+F +
Sbjct: 287 EDLLKFGMIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
            +++ +AD A+   +     GAR L+ ++E ++ D+ +     +  +  +I  E V   
Sbjct: 347 KALNLIADKALERKT-----GARGLRAILEEIMLDVMYEIPSSENIEKCIITEETVLKK 400



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 19/266 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGMGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSK----VMGSGRKKKIRMSVQKCYPELMRDESDRL-I 228
           D +N   I GGA  G+  + E          GS  + +   ++ +    +M ++  +  +
Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHIMPEDLLKFGM 294

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDK 254
             + + R  I       +V LD  DK
Sbjct: 295 IPEFIGRVPI-------VVTLDPLDK 313


>gi|327398619|ref|YP_004339488.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
           maritima DSM 10411]
 gi|327181248|gb|AEA33429.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea
           maritima DSM 10411]
          Length = 418

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 138/315 (43%), Gaps = 64/315 (20%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + +   ++ D+E+  +     N  + G    G   +++  +K++          S+ +  
Sbjct: 101 NSQTLKRKDDVELEKS-----NILLIGPTGTGKTLIAKTLAKILNVPFAIADATSLTEAG 155

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +      ++ + +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 156 -YVGEDVENILVRLLQATDYNVALAQK-GIVYIDEIDKISRKSENPSITRDVSGEGVQQA 213

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------ 305
           LL L+EGS V+            ++  I+T +ILFI  GAF                   
Sbjct: 214 LLKLIEGSIVNVPPYGGRKHPQQEFIQIDTTNILFICGGAFEGLENIIARRINKKAIGFT 273

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                           + P DL     +PE+ GR  V   L  LN+ +   ILT+ ++ L
Sbjct: 274 NPVNIDKKEKYNLLKQATPEDLMRYGLIPELIGRLHVVATLNELNEEELVRILTEPKNAL 333

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++   + + L  T+D++ A+A  A+        +GAR L+++ME ++ D+ F   
Sbjct: 334 VKQYSKMFSMDNVKLTITDDALRAIARKAIERK-----VGARGLRSIMEEIMVDLMFKIP 388

Query: 406 DLQE-KTVVIDAEYV 419
            +++ K  +ID   V
Sbjct: 389 SMKDVKECIIDENVV 403



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 10/236 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---DELMPKNILL 58
           KLT + +P EI   LD YI+ Q DAK+ +A+A  N ++R       R    EL   NILL
Sbjct: 62  KLT-SLTPEEIKKRLDEYIVSQDDAKKVLAVAAYNHYKRINSQTLKRKDDVELEKSNILL 120

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT I++ LA++   PF   + T  TE GYVG +VE I+  L+      V  ++
Sbjct: 121 IGPTGTGKTLIAKTLAKILNVPFAIADATSLTEAGYVGEDVENILVRLLQATDYNVALAQ 180

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +     DE+ + +  +    I   + G+       ++    + +          +     
Sbjct: 181 KGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGSIVNVPPYGGRKHPQQEFIQ 240

Query: 174 SDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            D +N   I GGA  G+ N+          G    + +  ++ Y  L +   + L+
Sbjct: 241 IDTTNILFICGGAFEGLENIIARRINKKAIGFTNPVNIDKKEKYNLLKQATPEDLM 296


>gi|158317028|ref|YP_001509536.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
 gi|238686843|sp|A8L1X0|CLPX_FRASN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158112433|gb|ABW14630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp.
           EAN1pec]
          Length = 430

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T ++LFI  GAF          + + +                        
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMP 293

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR P+   + +L++     ILT+ ++ L+ QYK L + +G+ LDFT 
Sbjct: 294 EDLLKYGMIPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTT 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +     ++    VI  E V  H+
Sbjct: 354 DALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYDIPSRKDVARAVITREVVLEHV 408

Query: 424 GDFPSETD 431
                  D
Sbjct: 409 NPTLVPRD 416



 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-------RDELMPKNILLVG 60
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q              EL   NILL+G
Sbjct: 63  KPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++                        D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFIVGGAFAGLD 258


>gi|238060617|ref|ZP_04605326.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
           39149]
 gi|237882428|gb|EEP71256.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC
           39149]
          Length = 431

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 60/310 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 175 DIKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRSVSERSTDDIFSQVMP 293

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F  
Sbjct: 294 EDMLKFGLIPEFIGRLPVITNVRSLDRSALVRILTEPRNALVKQYQRLFELDGVELEFDP 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   V+I  E V  ++
Sbjct: 354 PALEAIADQAMLRGT-----GARGLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENV 408

Query: 424 GDFPSETDMY 433
                  +  
Sbjct: 409 NPTIVPREFS 418



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            P EI   LD Y++GQ  AK+A+A+A+ N ++R Q  A           EL   NILL+G
Sbjct: 63  KPMEICQFLDNYVVGQDQAKKALAVAVYNHYKRIQAEAAGAPGSGSDAVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +   
Sbjct: 123 PTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKRAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++    + +                 D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFICGGAFAGLD 258


>gi|289577855|ref|YP_003476482.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermoanaerobacter italicus Ab9]
 gi|289527568|gb|ADD01920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter italicus Ab9]
          Length = 424

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          S+ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQIDTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHIMP 286

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L  L+K D   ILT+ ++ L+ QY++L + +G+ L+F +
Sbjct: 287 EDLLKFGMIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLH 422
            +++ +AD A+   +     GAR L+ ++E ++ D+ +        +  +I  E V   
Sbjct: 347 KALNLIADKALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITEETVLKK 400



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 19/266 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGMGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSK----VMGSGRKKKIRMSVQKCYPELMRDESDRL-I 228
           D +N   I GGA  G+  + E          GS  + +   ++ +    +M ++  +  +
Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHIMPEDLLKFGM 294

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDK 254
             + + R  I       +V LD  DK
Sbjct: 295 IPEFIGRVPI-------VVTLDPLDK 313


>gi|138896218|ref|YP_001126671.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus
           thermodenitrificans NG80-2]
 gi|166214777|sp|A4IRH2|CLPX_GEOTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134267731|gb|ABO67926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           thermodenitrificans NG80-2]
          Length = 421

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 59/304 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIDDVELSKSNILMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSRP------------------------- 309
                       ++  I+T +ILFI  GAF    P                         
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQADVDEK 278

Query: 310 -------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                          L+PE  GR PV   L+ L++     ILT  ++ ++ QYK++++ +
Sbjct: 279 NLLSKVLPEDLLKFGLIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L+F E ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  +I 
Sbjct: 339 GVELEFEEAALREIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIIT 393

Query: 416 AEYV 419
            + V
Sbjct: 394 VDTV 397



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 243 ICGGAFDGIE 252


>gi|285017389|ref|YP_003375100.1| ATP-dependent clp protease ATP-binding subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472607|emb|CBA15112.1| probable atp-dependent clp protease atp-binding subunit protein
           [Xanthomonas albilineans]
          Length = 428

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 154/386 (39%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALV----GKTATSNTREV-FRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L     G+     T  V      + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQQRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  ++E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRQKNDEVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +       +GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSVERKREVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L + EG+ L+F +D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFEMEGVELEFRQDALLAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQQ AKR +A+A+ N ++R +    +   EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+      S     +    + K +    ++    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSVERK-REVGKILAEVEPEDLI 298


>gi|154148896|ref|YP_001406902.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804905|gb|ABS51912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           hominis ATCC BAA-381]
          Length = 411

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 131/322 (40%), Gaps = 60/322 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
               EID +   + S   N  + G    G   +++  +K +          S+ +    +
Sbjct: 94  FKQNEIDDDTELSKS---NILLIGPTGSGKTLMAQTLAKFLEVPIAICDATSLTEAG-YV 149

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L  +       ++  E  GIVF+DE DKI        I   VS EGVQ+ LL 
Sbjct: 150 GEDVENILTRLLQAAGGDVKKAEK-GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLK 208

Query: 278 LVEGSSVSTK-----------YGSINTDHILFIASGAF---------------------- 304
           ++EGS V+             +  I+T +ILF+  GAF                      
Sbjct: 209 IIEGSVVNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEIINRRMGENILGFGQEK 268

Query: 305 ----------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                     H+  P DL     +PE+ GR  V   L  +++     ILT+ ++ ++ QY
Sbjct: 269 RSKKESQNLLHLVEPDDLVHFGIIPELIGRLHVVATLNEIDEDAMIRILTEPKNAILKQY 328

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   +G  L F +D+I  +A  A+   +     GAR L+++ME ++ DI F   +L  
Sbjct: 329 QKLFAIDGANLKFEDDAIAQVAKKAIERKT-----GARGLRSIMEDIMVDIMFDLPELAG 383

Query: 410 KTVVIDAEYVRLHIGDFPSETD 431
             V+I  + V         + +
Sbjct: 384 YDVIITKDVVNKTAKPILVKQN 405



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 124/258 (48%), Gaps = 16/258 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           + +P+E++  L+RY+IGQ+ AK+A ++ + N ++R     ++ D  EL   NILL+GPTG
Sbjct: 58  SITPQELMEVLNRYVIGQERAKKAFSVGVYNHYKRIFKQNEIDDDTELSKSNILLIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +    
Sbjct: 118 SGKTLMAQTLAKFLEVPIAICDATSLTEAGYVGEDVENILTRLLQAAGGDVKKAEKGIVF 177

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    + +                 D +N
Sbjct: 178 VDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDTTN 237

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              + GGA  G+  +    +   ++G G++K+ +   ++    L   E D L+    +  
Sbjct: 238 ILFVCGGAFDGLNEIINRRMGENILGFGQEKRSK---KESQNLLHLVEPDDLVHFG-IIP 293

Query: 236 DSIQMVENYGIVFLDEFD 253
           + I  +  + +  L+E D
Sbjct: 294 ELIGRL--HVVATLNEID 309


>gi|111221350|ref|YP_712144.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia alni
           ACN14a]
 gi|123338856|sp|Q0RPH1|CLPX_FRAAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|111148882|emb|CAJ60561.1| ATPase, chaperone subunit of serine protease [Frankia alni ACN14a]
          Length = 432

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 119 SNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 177

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 178 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 236

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T ++LFI  GAF          + + +                        
Sbjct: 237 PHQEFIQIDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASDVFGDIMP 296

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR PV   + +L++     ILT+ ++ L+ QYK L + + + LDFT 
Sbjct: 297 EDLLKYGMIPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTS 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +     ++   VV+  E V  H+
Sbjct: 357 DALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYDIPSRKDVARVVVTREVVLEHV 411

Query: 424 GDFPSETD 431
                  D
Sbjct: 412 NPTLVPRD 419



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 15/199 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----------RDELMPKNIL 57
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q                 EL   NIL
Sbjct: 63  KPREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSGGGGGAEGAKAEVELAKSNIL 122

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++
Sbjct: 123 LLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKA 182

Query: 118 R-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                  DEV + A  +    I   + G+       ++                      
Sbjct: 183 ETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFI 242

Query: 173 SSDISNFDIPGGASVGILN 191
             D +N     G +   L+
Sbjct: 243 QIDTTNVLFIVGGAFAGLD 261


>gi|322379412|ref|ZP_08053782.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
 gi|322380886|ref|ZP_08054965.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5]
 gi|321146690|gb|EFX41511.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5]
 gi|321148121|gb|EFX42651.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1]
          Length = 434

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 137/323 (42%), Gaps = 63/323 (19%)

Query: 151 FRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             K+L   E  D    ++E++ +     N  + G    G   +++  ++ +         
Sbjct: 108 HYKRLHYQETRDSNTQEVEISKS-----NILLVGPTGSGKTLMAQTLARFLNVPIAISDA 162

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVS 267
            S+ +    +  D  + L  +       ++  +  GIVF+DE DKI        I   VS
Sbjct: 163 TSLTEAG-YVGEDVENILTRLLQASDGDVERAQK-GIVFIDEIDKIARLSENRSITRDVS 220

Query: 268 REGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------ 304
            EGVQ+ LL ++EG+ V+             +  I+T +ILFI  GAF            
Sbjct: 221 GEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQIDTTNILFICGGAFDGIIDVIKRRIH 280

Query: 305 --------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILT 339
                               H+  P DL+     PE+ GR PV   LK ++K     IL 
Sbjct: 281 SNVLGFGNEKKTKEELEDILHLVEPEDLISYGLIPELIGRLPVISTLKPISKEAMVDILQ 340

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
             ++ LI QY+ L K +G+ L F E++++ +A++A+        +GAR L+ ++E    D
Sbjct: 341 KPKNALIKQYQALFKMDGVELIFEEEAVEEIANLAIKRK-----VGARGLRAIIESFGLD 395

Query: 400 ISFSASDLQEKTVVIDAEYVRLH 422
           I F   +L++  V+I  E V   
Sbjct: 396 IMFDLPNLKDYQVIITKECVLKQ 418



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 13/228 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----RDELMPKNILLVGPT 62
           SP+ +   LD Y+IGQ+DAKR +++A+ N ++R              E+   NILLVGPT
Sbjct: 79  SPKLLKEALDHYVIGQEDAKRVLSVAVYNHYKRLHYQETRDSNTQEVEISKSNILLVGPT 138

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  +   V  +++   
Sbjct: 139 GSGKTLMAQTLARFLNVPIAISDATSLTEAGYVGEDVENILTRLLQASDGDVERAQKGIV 198

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A ++    I   + G+       ++    + +                 D +
Sbjct: 199 FIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQIDTT 258

Query: 178 NF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           N   I GGA  GI+++ +  + S V+G G +KK +  ++     +  +
Sbjct: 259 NILFICGGAFDGIIDVIKRRIHSNVLGFGNEKKTKEELEDILHLVEPE 306


>gi|253575672|ref|ZP_04853008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251845010|gb|EES73022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 418

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 142/344 (41%), Gaps = 67/344 (19%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +  + A  +         +     +K  D+E+  +     N  + G    G   
Sbjct: 70  ILDQYVIGQEQAKKSLSVAVYNHYKRINTQNKIEDVELQKS-----NILLLGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTMAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DK+  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 299 IASGAF----------------------------------HVSRPADL-----LPEIQGR 319
           I  GAF                                   +  P DL     +PE  GR
Sbjct: 243 ICGGAFDGLEQMIKRRIGKKVIGFNAANDGQKELKPGEYLSMVLPEDLLKFGLIPEFVGR 302

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L++     IL++ ++ L+ QY++L++ + + L F   +++A+A  A+  N+
Sbjct: 303 LPVISTLEPLDEKTLVRILSEPKNALVKQYQKLLELDNVNLQFEPKALEAIAREAIKRNT 362

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
                GAR L+ ++E ++ D+ +      + T  VI  + V   
Sbjct: 363 -----GARGLRAIIEGIMLDVMYEVPSRDDITDCVITEKVVLEK 401



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 16/292 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NILL+GPTG GK
Sbjct: 63  KPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC---YPELMRDESDRLIDMDTVHRDSI 238
             G +   L         M   R  K  +          EL   E   ++  + + +  +
Sbjct: 243 ICGGAFDGLEQ-------MIKRRIGKKVIGFNAANDGQKELKPGEYLSMVLPEDLLKFGL 295

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
                  +  +   + +  +     +   +  + +    L+E  +V+ ++  
Sbjct: 296 IPEFVGRLPVISTLEPLDEKTLVRILSEPKNALVKQYQKLLELDNVNLQFEP 347


>gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
 gi|171769684|sp|A7HY53|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum
           lavamentivorans DS-1]
          Length = 421

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 143/342 (41%), Gaps = 64/342 (18%)

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLS 193
           + G        +   K++    + +    +  A  ++D+    SN  + G    G   L+
Sbjct: 69  ICGVLDDYVIGQQHAKRVLSVAVHNHYKRLNHAAKNNDVELAKSNILLIGPTGCGKTLLA 128

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
           +  ++++          ++ +    +  D  + ++ +      +++  +  GIV++DE D
Sbjct: 129 QTLARILDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADYNVERAQ-RGIVYIDEVD 186

Query: 254 KIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIA 300
           KI  +     I   VS EGVQ+ LL ++EG+  S            ++  ++T +ILFI 
Sbjct: 187 KISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFIC 246

Query: 301 SGAF----------------------------------HVSRPADL-----LPEIQGRFP 321
            GAF                                      P DL     +PE  GR P
Sbjct: 247 GGAFAGLEKIIGQRGKGAGIGFGAKVQSVEDRRTGDILKDLEPEDLLKFGLIPEFVGRMP 306

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           V   L+ L++     ILT  ++ L+ QY+ L + E + L F+E+++ A++  A+   +  
Sbjct: 307 VLATLEDLDEEALLTILTQPKNALVKQYERLFEMENVRLTFSEEALRAVSRKAIERKT-- 364

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
              GAR L++++E +L D  F    L+  + VVI AE V   
Sbjct: 365 ---GARGLRSILESILLDTMFELPTLEGVEEVVISAEVVEGK 403



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD Y+IGQQ AKR +++A+ N ++R    A   D EL   NILL+GPTG GK
Sbjct: 65  SPQEICGVLDDYVIGQQHAKRVLSVAVHNHYKRLNHAAKNNDVELAKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  +     K  G G   K   +  ++    L   E + L+
Sbjct: 245 ICGGAFAGLEKIIGQRGKGAGIGFGAKVQSVEDRRTGDILKDLEPEDLL 293


>gi|152992701|ref|YP_001358422.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurovum sp.
           NBC37-1]
 gi|151424562|dbj|BAF72065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurovum
           sp. NBC37-1]
          Length = 406

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 57/305 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I   DT    SN  + G    G   L++  ++ +          ++ +    +  D  +
Sbjct: 95  NISDDDTQLAKSNVLLIGPTGSGKTLLAQTIARFLNVPIAIADATNLTEAG-YVGEDVEN 153

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +        Q  E  GIVF+DE DKI        I   VS EGVQ+ LL L+EGS 
Sbjct: 154 ILTKLLMEADGDPQRAEQ-GIVFIDEIDKIARMGENRSITRDVSGEGVQQALLKLIEGSV 212

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILFI  GAF                            
Sbjct: 213 VNIPPKGGRKHPNQDFIQIDTSNILFICGGAFDGLNDIIKRRLGGNTLGFGQEKRSKSEE 272

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
               H+    DL     +PE+ GR  V   L  + K D   IL + +++L+ QY++L + 
Sbjct: 273 ENMLHLVESDDLVSYGLIPELIGRLHVLATLGKITKEDMVRILIEPKNSLVKQYQKLFEI 332

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           + + L F ED++  +A  A++  +     GAR L+++ME VL DI +   +L    V+I 
Sbjct: 333 DDVKLTFEEDALSLIAQKAIDRKT-----GARGLRSIMEEVLLDIMYDLPELAGYEVIIT 387

Query: 416 AEYVR 420
            E V 
Sbjct: 388 EEVVE 392



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 18/291 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
           ++P+EI + LD YIIGQ+ AK+ +++A+ N ++R     +D   +L   N+LL+GPTG G
Sbjct: 58  YTPKEINALLDEYIIGQEGAKKTLSVAVYNHYKRIFRNISDDDTQLAKSNVLLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ +AR    P    + T  TE GYVG +VE I+  L+  A    + +       D
Sbjct: 118 KTLLAQTIARFLNVPIAIADATNLTEAGYVGEDVENILTKLLMEADGDPQRAEQGIVFID 177

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A +     I   + G+       ++    + +                 D SN  
Sbjct: 178 EIDKIARMGENRSITRDVSGEGVQQALLKLIEGSVVNIPPKGGRKHPNQDFIQIDTSNIL 237

Query: 181 IPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
              G +   LN      L    +G G++K+ +            +    L++ D +    
Sbjct: 238 FICGGAFDGLNDIIKRRLGGNTLGFGQEKRSKS---------EEENMLHLVESDDLVSYG 288

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  L    KI   D    +   +  + +    L E   V   +
Sbjct: 289 LIPELIGRLHVLATLGKITKEDMVRILIEPKNSLVKQYQKLFEIDDVKLTF 339


>gi|319787635|ref|YP_004147110.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466147|gb|ADV27879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 429

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 151/391 (38%), Gaps = 89/391 (22%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L       + A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQQRAKKTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   +  D+E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRQRNEDVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFIVGGAFAGLDKIIQQRSSDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSSKVKADTGKLLAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALVKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+++L + EG+ L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFRKLFEMEGVELEFRPDALSAIARKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
            D  +     +    VV+D   +      + 
Sbjct: 383 LDTMYDLPSQENVSKVVVDESVIEHKTEPYL 413



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQQ AK+ +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQQRAKKTLAVAVYNHYKRIESRQRNEDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKC--YPELMRDESDRLI 228
             G +   L+  + +  S   G G   K++ S  K      L   E + LI
Sbjct: 248 IVGGAFAGLDKIIQQRSSDAGGIGFGAKVKSSKVKADTGKLLAEVEPEDLI 298


>gi|325300152|ref|YP_004260069.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
 gi|324319705|gb|ADY37596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           salanitronis DSM 18170]
          Length = 414

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 137/326 (42%), Gaps = 66/326 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   E  D  ++IE        SN  + G    G   L+   +K++          
Sbjct: 95  HYKRLLQPESKDD-VEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +  V   +++  E  GIVF+DE DKI  +     I   VS 
Sbjct: 147 VLTEAG-YVGEDIESILTRLLQVADYNVEEAE-RGIVFIDEIDKIARKGDNPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF             
Sbjct: 205 EGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPVNTKNILFICGGAFDGIERKIAQRLNT 264

Query: 305 HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           HV                          +   L+PEI GR P+  +L  L+++  R ILT
Sbjct: 265 HVVGYGAAKETVNIDRKNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNILT 324

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++++I QY +L + +G+ L F  +  + + D A+        +GAR L++++E ++ D
Sbjct: 325 EPKNSIIKQYIKLFEMDGVKLTFEPEVFEYIVDKAIEYK-----LGARGLRSIVETIMMD 379

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGD 425
             F     +  T  +  +Y +  +G 
Sbjct: 380 TMFEVPSHKIDTFTVTLDYAKEQMGK 405



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 10/229 (4%)

Query: 3   LTFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNIL 57
           +  N      P++I   LD+Y+IGQ  AKR +++A+ N ++R   P    D E+   NI+
Sbjct: 57  MNLNLADLPKPKDIKEFLDQYVIGQDSAKRYLSVAVYNHYKRLLQPESKDDVEIEKSNII 116

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           +VG TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+
Sbjct: 117 MVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEA 176

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            R     DE+ + A       I   + G+       ++    + +          E    
Sbjct: 177 ERGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLI 236

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
             +  N     G +   +                  + +V      LM+
Sbjct: 237 PVNTKNILFICGGAFDGIERKIAQRLNTHVVGYGAAKETVNIDRKNLMQ 285


>gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 428

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 140/327 (42%), Gaps = 65/327 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++R       E D+E+A +     N  + G    G   L++  ++++          
Sbjct: 94  HYKRVRSEGDRPGEEDVEIAKS-----NILLLGPTGSGKTLLAQTLARILNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKVARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF             
Sbjct: 207 EGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLEKLIESRTGQ 266

Query: 306 -------VSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                  V RP                      ++PE  GR PV   +  L++     IL
Sbjct: 267 QGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGMIPEFVGRLPVITSVHDLDREALIRIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L+ QY+ L + +G+ L+FT D+++A+A+  +   +     GAR L+ ++E VL 
Sbjct: 327 TEPRNALVKQYQRLFELDGVELEFTPDALNAIAEQGIIRGT-----GARGLRAIIEEVLL 381

Query: 399 DISFSASDLQE-KTVVIDAEYVRLHIG 424
            + +     ++   V+I  E V  ++ 
Sbjct: 382 SVMYEVPSREDVGQVIITRETVIDNVN 408



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 10/197 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
            PREI   LD Y+IGQ+ AK+A+++A+ N ++R +     P +   E+   NILL+GPTG
Sbjct: 65  KPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTG 124

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++      
Sbjct: 125 SGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIY 184

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + A  +    I   + G+       ++                        D +N
Sbjct: 185 IDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTN 244

Query: 179 -FDIPGGASVGILNLSE 194
              I GGA  G+  L E
Sbjct: 245 VLFICGGAFAGLEKLIE 261


>gi|224369886|ref|YP_002604050.1| ClpX2 [Desulfobacterium autotrophicum HRM2]
 gi|223692603|gb|ACN15886.1| ClpX2 [Desulfobacterium autotrophicum HRM2]
          Length = 580

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 175/437 (40%), Gaps = 80/437 (18%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNIL 57
            FN  P+E+++ LD+YI+ Q+ AK  +A  +   + R +     +         +  NIL
Sbjct: 58  NFNIKPQELIAYLDQYIVKQKRAKSVLATKICTHFNRVKHLETTKHSDVRITGSIKSNIL 117

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTGVGKT I + +A+  G PF+K + TKF+E GYVG +V+ ++RDLV  A + +  +
Sbjct: 118 MLGPTGVGKTYIVKLIAKRIGVPFVKADATKFSETGYVGGDVDDLVRDLVKEADDDIELA 177

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               +     ++  ++I  +   + A  +   V R  L+  E +D  +D++V        
Sbjct: 178 ECGIIY----LDEIDKIAASSNLRGADISRTGVQRALLKPMEETD--VDLKVPHDPVS-- 229

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                            +  ++    R  K                         V+  +
Sbjct: 230 -----------------MMQELESFQRTGKRSER--------------------RVNTSN 252

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I  + +     L+E   +  R + + +G            L +  + S     +  + ++
Sbjct: 253 ILFIMSGAFSDLNEI--VSRRVTHHAMGFGS--------SLAKAKTNSDILKQVTAEDLV 302

Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                            E  GR PVR  L +L+K D   ILT   + +IL  +      G
Sbjct: 303 EF-----------GFESEFIGRLPVRCVLDTLSKDDLFTILTMPNNPVILGKRLDFAAYG 351

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I + FT +++D LA  A   N+     GAR L +V+E  L +          K  V+   
Sbjct: 352 IDIVFTPEALDILAQRAFEENT-----GARGLVSVVENALLEFEEKLPSSTIKRFVVTPG 406

Query: 418 YV---RLHIGDFPSETD 431
            +   R  +    ++ +
Sbjct: 407 VITDPRAELALILADEN 423


>gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
 gi|123379515|sp|Q1GPH4|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis
           alaskensis RB2256]
          Length = 423

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 132/303 (43%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + ++ +      
Sbjct: 113 SNILLVGPTGSGKTLLAQTLARFLDVPFTMADATTLTEAG-YVGEDVENIILKLLQSSDY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S         
Sbjct: 172 NVEKAQ-RGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPAD------------ 311
              ++  ++T +ILFIA GAF                    HV+ P +            
Sbjct: 231 PQQEFLQVDTTNILFIAGGAFAGLEKIIGDRLQGKSIGFGAHVAGPDERRAGEVLKQIEP 290

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+      IL + ++ L+ QYK+L   E + L FT+
Sbjct: 291 EDLLKFGLIPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L++++E +L D  F   DL +   +V+D + V    
Sbjct: 351 DALVAVAKKAIERKT-----GARGLRSIVEAILLDTMFDLPDLTDVVEIVVDKDVVEGRK 405

Query: 424 GDF 426
              
Sbjct: 406 DPV 408



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILLVGPTG GK
Sbjct: 66  TPLEICQHLDAYVIGQNKAKRVLSVAVHNHYKRLANSGRGEDVELAKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LAR    PF   + T  TE GYVG +VE II  L+  +   V +++R  V    
Sbjct: 126 TLLAQTLARFLDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQRGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +                  ++    L + E + L+
Sbjct: 246 IAGGAFAGLEKIIGDRLQGKSIGFGAHVAGPDERRAGEVLKQIEPEDLL 294


>gi|28198387|ref|NP_778701.1| ATP-dependent protease ATP-binding subunit [Xylella fastidiosa
           Temecula1]
 gi|182681029|ref|YP_001829189.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           M23]
 gi|32129455|sp|Q87E50|CLPX_XYLFT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691092|sp|B2I8K4|CLPX_XYLF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28056457|gb|AAO28350.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Temecula1]
 gi|182631139|gb|ACB91915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylella
           fastidiosa M23]
 gi|307579497|gb|ADN63466.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 426

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 79/380 (20%)

Query: 107 VDVAINIVRESRRDEVR-EQASINAEERILDALV----GKTATSNTREV-FRKKLRDGEI 160
           V++  +I+RE   ++ +  ++S+   + IL+ L     G+     T  V      +  E 
Sbjct: 44  VELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIES 103

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             K  DIE+A +     N  + G    G   L+E  ++++          ++ +      
Sbjct: 104 RHKNDDIELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGE 158

Query: 221 RDE--SDRLIDM-DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
             E    +L+   D     +      +GIV++DE DKI  +     I   VS EGVQ+ L
Sbjct: 159 DVENIIQKLLHKCDYDVEKA-----QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQAL 213

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAFHV------------------ 306
           L L+EG+  S            ++  ++T +ILFI  GAF                    
Sbjct: 214 LKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRCNEVGGIGFG 273

Query: 307 ------------------SRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL+     PE  GR PV   L  L++S    ILT+ ++
Sbjct: 274 VKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKN 333

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            +  Q+K+L + E + L+F +D++ A+A  A+   +     GAR L+T++E VL D  + 
Sbjct: 334 AITKQFKKLFEMENVELEFRQDALSAVARKALKRKT-----GARGLRTIVELVLLDTMYE 388

Query: 404 ASDLQE-KTVVIDAEYVRLH 422
               +    VV+D   +   
Sbjct: 389 LPSQEGISKVVVDESVIENK 408



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI+  LD+Y+IGQQ AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLHKCDYDVEKAQHGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDS 237
             G +   L+  + +  ++V G G   K++   S +     L   E + LI    +    
Sbjct: 248 ICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPE-- 305

Query: 238 IQMVENYGIVFLDEFD-----KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
             +     +  LDE D     KI+              + +    L E  +V  ++  
Sbjct: 306 -FVGRLPVVATLDELDESALVKILTEPKN--------AITKQFKKLFEMENVELEFRQ 354


>gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
 gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           gardneri ATCC 19865]
          Length = 428

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 148/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L         A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  ++E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRSKNDEVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L   EG+ L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   + EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 181 IPGGASVGILNLSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  + +  S     +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLI 298


>gi|332798602|ref|YP_004460101.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Tepidanaerobacter sp. Re1]
 gi|332696337|gb|AEE90794.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Tepidanaerobacter sp. Re1]
          Length = 421

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 143/355 (40%), Gaps = 67/355 (18%)

Query: 132 ERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           + ILD   +  + A            +     +K  D+E+  +     N  + G    G 
Sbjct: 68  KDILDQYVVGQEQAKKTLSVAVYNHYKRINYQNKIDDVELQKS-----NIVMLGPTGSGK 122

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             L++  ++++          S+ +    +  D  + L+ +       ++  E  GIV++
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGIVYI 180

Query: 250 DEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHI 296
           DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +I
Sbjct: 181 DEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240

Query: 297 LFIASGAF---------HVSRPA------------------------------DLLPEIQ 317
           LFI  GAF          + + +                               ++PE  
Sbjct: 241 LFICGGAFEGIGDIIQNRIGKKSIGFEAEIQSQEQKNIGEILKHLMPEDLLKYGMIPEFV 300

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV V L +L+++    IL + ++ L+ QY++L + +   L+FT+D++  +A  A+  
Sbjct: 301 GRLPVIVTLSALDENALIKILKEPKNALVKQYQKLFEMDNSQLEFTDDALMVIAQEAIRR 360

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
            +     GAR L+ ++E V+ DI +      +    VI  E V          +D
Sbjct: 361 KT-----GARGLRAILEEVMLDIMYELPHRNDIAKCVITKEVVLNREEPIIVTSD 410



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD+Y++GQ+ AK+ +++A+ N ++R      + D EL   NI+++GPTG GK
Sbjct: 63  KPHEIKDILDQYVVGQEQAKKTLSVAVYNHYKRINYQNKIDDVELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIVYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN--LSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDR 226
             G +   +   +     K      +  + + + ++ +    LM ++  +
Sbjct: 243 ICGGAFEGIGDIIQNRIGKKSIGFEAEIQSQEQKNIGEILKHLMPEDLLK 292


>gi|296274531|ref|YP_003657162.1| sigma 54 interacting domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098705|gb|ADG94655.1| Sigma 54 interacting domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 407

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 57/303 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            DT  + SN  + G    G   L++  ++ +          S+ +    +  D  + +  
Sbjct: 106 EDTEINKSNVLLIGPTGSGKTLLAQTIARYLDVPLAIADATSLTEAG-YVGDDVENVITR 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK 287
           +       I+  E  GI+F+DE DKI        I   VS EGVQ+ +L ++EGS V+  
Sbjct: 165 LLQAANGDIKKAET-GIIFIDEIDKIARMSENRSITRDVSGEGVQQAMLKIIEGSVVNVP 223

Query: 288 -----------YGSINTDHILFIASGAF------------------HVSRPA-------- 310
                         ++T +ILFI  GAF                  +  + +        
Sbjct: 224 PKGGRKHPGQDMTQVDTTNILFICGGAFDGLEEIIKRKKGNNILGFNQVKNSKKDEAGLI 283

Query: 311 -----------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE+ GR  +   L  + + D   ILT+ ++ LI QY +L + + + 
Sbjct: 284 SFVEADDLVKYGLIPELIGRLHMIATLNEITEDDMVHILTEPKNALIKQYIKLFEMDKVN 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L+F +D++ A+A  A+   +     GAR L++++E ++ DI F   + +EKT+ I  + V
Sbjct: 344 LEFDKDALLAIAKKAIERKT-----GARGLRSILEDIMLDIMFDLPNYKEKTITITKDVV 398

Query: 420 RLH 422
              
Sbjct: 399 SDK 401



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y++GQ  AK+ +++A+ N ++R     ++ +  E+   N+LL+GPTG G
Sbjct: 65  TPSELKALLDDYVVGQHRAKKVLSVAVYNHYKRIFRRDEIGEDTEINKSNVLLIGPTGSG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ +AR    P    + T  TE GYVG +VE +I  L+  A   ++++       D
Sbjct: 125 KTLLAQTIARYLDVPLAIADATSLTEAGYVGDDVENVITRLLQAANGDIKKAETGIIFID 184

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A ++    I   + G+       ++    + +              T  D +N  
Sbjct: 185 EIDKIARMSENRSITRDVSGEGVQQAMLKIIEGSVVNVPPKGGRKHPGQDMTQVDTTNIL 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L       K        +++ S +     +   E+D L+
Sbjct: 245 FICGGAFDGLEEIIKRKKGNNILGFNQVKNSKKDEAGLISFVEADDLV 292


>gi|317475726|ref|ZP_07934985.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA]
 gi|316908109|gb|EFV29804.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA]
          Length = 414

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 65/319 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +  D +++IE        SN  + G    G   L+   +K++           + +   
Sbjct: 101 QKAGDDDVEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAG- 152

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 153 YVGEDIESILTRLLQVADYNVAEAEQ-GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGL 211

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGA--------------------- 303
           L L+EGS V+            K   +NT +ILFI  GA                     
Sbjct: 212 LKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTNVVGYGA 271

Query: 304 -----------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR PV  +L  L+++  R ILT+ ++++I
Sbjct: 272 VRNTAAIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRAILTEPKNSII 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY +L + +G+ L F +   + + D AV        +GAR L++++E ++ D+ F    
Sbjct: 332 KQYIKLFEMDGVELTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIMMDVMFEVPS 386

Query: 407 LQEKTVVIDAEYVRLHIGD 425
             +K++V+  +Y R  +  
Sbjct: 387 EHKKSLVVTLDYARRQLEK 405



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+YIIGQ DAKR +A+++ N ++R  Q   D   E+   NI++V
Sbjct: 59  LNLKELPKPVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
 gi|23813860|sp|Q8PNI4|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123585731|sp|Q3BWQ0|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas
           perforans 91-118]
          Length = 428

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 148/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L         A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  D+E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRSKNDDVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L   EG+ L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFDMEGVELEFRPDALSAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 181 IPGGASVGILNLSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  + +  S     +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLI 298


>gi|218128448|ref|ZP_03457252.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697]
 gi|217989339|gb|EEC55652.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697]
          Length = 414

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 65/319 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +  D +++IE        SN  + G    G   L+   +K++           + +   
Sbjct: 101 QKAGDDDVEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAG- 152

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 153 YVGEDIESILTRLLQVADYNVAEAEQ-GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGL 211

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGA--------------------- 303
           L L+EGS V+            K   +NT +ILFI  GA                     
Sbjct: 212 LKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTNVVGYGA 271

Query: 304 -----------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR PV  +L  L+++  R ILT+ ++++I
Sbjct: 272 VRNTAAIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRAILTEPKNSII 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY +L + +G+ L F +   + + D AV        +GAR L++++E ++ D+ F    
Sbjct: 332 KQYIKLFEMDGVELTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIMMDVMFEVPS 386

Query: 407 LQEKTVVIDAEYVRLHIGD 425
             +K++V+  +Y R  +  
Sbjct: 387 EHKKSLVVTLDYARRQLEK 405



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+YIIGQ DAKR +A+++ N ++R  Q   D   E+   NI++V
Sbjct: 59  LNLKELPKPVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|172058155|ref|YP_001814615.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium
           sibiricum 255-15]
 gi|229889852|sp|B1YJW0|CLPX_EXIS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171990676|gb|ACB61598.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Exiguobacterium sibiricum 255-15]
          Length = 421

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 59/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 110 SNIVMIGPTGSGKTLLAQTMARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 DVEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAFH---------------------------------VSRPA 310
              ++  I+T +ILFI  GAF                                   + P 
Sbjct: 228 PHQEFIQIDTTNILFIVGGAFDGIDQSIKRRLGKKVIGFGNDSENRNLTQKEILAAALPE 287

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE  GR PV   L+ L++     ILT  ++ L+ QYK++++ + + LDFTED
Sbjct: 288 DLQKFGLIPEFIGRLPVMATLEPLDEEALVQILTKPKNALVKQYKKMLQLDDVELDFTED 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++  +A +A+   +     GAR L++++E  + DI F     ++   V+I AE +    G
Sbjct: 348 ALVEIAKLAIERKT-----GARGLRSIIEETMLDIMFEIPSREDIAKVIITAETLTGKRG 402

Query: 425 DFPSETD 431
                 D
Sbjct: 403 PTLELKD 409



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + L+ Y+IGQ+ AK+++++A+ N ++R        D EL   NI+++GPTG GK
Sbjct: 63  KPHEIRATLNDYVIGQEKAKKSLSVAMYNHYKRINAGGRADDVELSKSNIVMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 123 TLLAQTMARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILNLS 193
             G +   ++ S
Sbjct: 243 IVGGAFDGIDQS 254


>gi|293369499|ref|ZP_06616078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CMC 3f]
 gi|292635384|gb|EFF53897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CMC 3f]
          Length = 414

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVSEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +D  + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y ++ +  
Sbjct: 378 MDVMFEIPSENKKEYKVTLDYAKMQLEK 405



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVSEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|310798046|gb|EFQ32939.1| ATP-dependent Clp protease [Glomerella graminicola M1.001]
          Length = 585

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 157/399 (39%), Gaps = 66/399 (16%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +  ++ PA  + ++   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G+
Sbjct: 190 YLSEEPPAPPQVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQ 249

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE  +  L+  +   ++ +    +     ++  +++               V +  L+ 
Sbjct: 250 DVETCVERLLIESNYDIKATEHGII----VLDEFDKLAKRESMNGRDVGGEGVQQALLKL 305

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E S   I+++   +S           +S                 + K           
Sbjct: 306 VEGSKVTINVKDNRSSRSTPPITTNYTSSSSTSAPQS------TPPQAK----------- 348

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE-------- 269
                     +D  T++  +I  V     V LD+   +V R S   +G   E        
Sbjct: 349 ----------VDQYTINTTNILFVFCGAFVGLDKV--VVRRVSKPSMGFGSELRGKQSLS 396

Query: 270 GVQRD-------LLPLVEGSSVSTKYGSIN-TDHILFIASGAFHVSRPADLLPEIQGRFP 321
           G Q D        LP V   + ++ Y  ++ T  +     G          +PE+ GR  
Sbjct: 397 GNQHDLPRHLFSHLPHVSTDASASSYTPLDLTTPVDLQTFG---------FIPELIGRVH 447

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
               L  L+ SD   ILT+  ++L+ QY  L +T    L FT+ ++ A+A+ AV   +  
Sbjct: 448 NICALSPLSLSDLYRILTEPRNSLVAQYTALFETYPSRLHFTKKALYAIAERAVKAET-- 505

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
              GAR L+  MERVL +  F A       V+I    V+
Sbjct: 506 ---GARGLKMEMERVLAEPIFDAP---MPYVLITEGCVK 538


>gi|291543931|emb|CBL17040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           sp. 18P13]
          Length = 421

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 140/354 (39%), Gaps = 66/354 (18%)

Query: 132 ERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           +++LD   +    A            +     D   D+E+  +     N  + G   VG 
Sbjct: 72  KKVLDEYVVGQDAAKVALSVSVYNHYKRIFSQDDGEDVELQKS-----NVLLLGPTGVGK 126

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             L++  ++ +          ++ +    +  D  + L+ +       ++  E  GI+++
Sbjct: 127 TFLAQTLARTLDVPFAIADATTITEAG-YVGDDVENVLLRLIQAANYDVEAAE-RGIIYI 184

Query: 250 DEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHI 296
           DE DKI  +         VS EGVQ+ LL ++EG+  +            ++  INT +I
Sbjct: 185 DEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIHINTKNI 244

Query: 297 LFIASGAFH---------------------VSRPA-----------------DLLPEIQG 318
           LFI  GAF                      +S+ A                  ++PE+ G
Sbjct: 245 LFICGGAFDGLERAISKRLQSSSLGFGADVISKKAKIKNIFRKAIPQDLVKFGMVPELVG 304

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R P+   L  L+++    ILT+ ++ L+ QY +L   + I L    ++++A+A  A+   
Sbjct: 305 RLPIITALDELDEASLVRILTEPKNALVKQYCKLFGYDNIELVIEPEALEAIAKRALEQK 364

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           +     GAR L+ ++E +L    F A        V+++A  V+ H        D
Sbjct: 365 T-----GARGLRAILEDILMQCMFDAPSESGIAKVIVNAACVQEHKQPLMLNQD 413



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 21/264 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           MKL     P EI   LD Y++GQ  AK A+++++ N ++R     D  D EL   N+LL+
Sbjct: 63  MKL---LKPAEIKKVLDEYVVGQDAAKVALSVSVYNHYKRIFSQDDGEDVELQKSNVLLL 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + R
Sbjct: 120 GPTGVGKTFLAQTLARTLDVPFAIADATTITEAGYVGDDVENVLLRLIQAANYDVEAAER 179

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    +   + G+       ++    + +                 
Sbjct: 180 GIIYIDEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIHI 239

Query: 175 DISNF-DIPGGASVGILNLSE---LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-ID 229
           +  N   I GGA  G+          S +         +  ++  + + +  +  +  + 
Sbjct: 240 NTKNILFICGGAFDGLERAISKRLQSSSLGFGADVISKKAKIKNIFRKAIPQDLVKFGMV 299

Query: 230 MDTVHRDSIQMVENYGIVFLDEFD 253
            + V R  I       I  LDE D
Sbjct: 300 PELVGRLPI-------ITALDELD 316


>gi|295695313|ref|YP_003588551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           tusciae DSM 2912]
 gi|295410915|gb|ADG05407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           tusciae DSM 2912]
          Length = 421

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 145/353 (41%), Gaps = 67/353 (18%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A  +         +      K  D+E++ +     N  + G    G   
Sbjct: 70  ILDQYVIGQDHAKKSLAVAVYNHYKRINAQGKPDDVELSKS-----NILLIGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  ++++          S+ +    +  D  + L+ +       ++  E  GI+++DE
Sbjct: 125 LAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAEK-GIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T +ILF
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNILF 242

Query: 299 IASGAF--------------------HVSRPADL-------------------LPEIQGR 319
           I  GAF                      +R  DL                   +PE  GR
Sbjct: 243 ICGGAFDGLEQIIKRRLGRKVIGFGSEEARGTDLSRDEVLSKVLPEDLLKYGLIPEFVGR 302

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L +L+++  + IL + ++ L+ QY+ L++ + + L+FT++++  +A  A+  N+
Sbjct: 303 LPVITTLAALDETALKRILLEPKNALVKQYQRLLELDDVQLEFTDEALTEIAREAIKRNT 362

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
                GAR L+ ++E ++ D+ +      +    V+  E V L       + D
Sbjct: 363 -----GARGLRAIIEGIMLDVMYEIPSRDDITKCVVTKETVLLKESPILVKAD 410



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61
           LT    P EI + LD+Y+IGQ  AK+++A+A+ N ++R        D EL   NILL+GP
Sbjct: 58  LTDVPKPTEIRAILDQYVIGQDHAKKSLAVAVYNHYKRINAQGKPDDVELSKSNILLIGP 117

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +  
Sbjct: 118 TGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGI 177

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DE+ + A  +    I   + G+       ++    +                   D 
Sbjct: 178 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237

Query: 177 SNF-DIPGGASVGILNL 192
           SN   I GGA  G+  +
Sbjct: 238 SNILFICGGAFDGLEQI 254


>gi|229543649|ref|ZP_04432709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           coagulans 36D1]
 gi|229328069|gb|EEN93744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           coagulans 36D1]
          Length = 422

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 59/298 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 110 SNICLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 DVEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAFH---------------------------------VSRPA 310
              ++  I+T +ILFI  GAF                                     P 
Sbjct: 228 PHQEFIQIDTTNILFICGGAFDGIDQIIKRRLGKKVIGFGTDLKNDELDEQSLLKHVLPE 287

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE  GR PV   L+ L++     ILT+ ++ L+ QYK++++ + + L+F +D
Sbjct: 288 DLLSFGLIPEFIGRLPVIATLEQLDEEALIKILTEPKNALVKQYKKMLELDHVELEFEQD 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++  +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V   
Sbjct: 348 ALKEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCIVTKESVLDK 400



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   L  Y+IGQ+ AK+++A+A+ N ++R    + + + EL   NI L+GPTG GK
Sbjct: 63  KPHEIREILAEYVIGQEQAKKSLAVAVYNHYKRINSNSKIDEVELAKSNICLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   ++
Sbjct: 243 ICGGAFDGID 252


>gi|303248989|ref|ZP_07335235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
 gi|302489638|gb|EFL49576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           fructosovorans JJ]
          Length = 417

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 133/306 (43%), Gaps = 60/306 (19%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D SN  + G    G   L++  ++V+          ++ +    +  D  + L+ +    
Sbjct: 110 DKSNILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAG-YVGEDVENILVQLLQNA 168

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              I+   + GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +       
Sbjct: 169 DYDIEAA-SRGIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGR 227

Query: 287 -----KYGSINTDHILFIASGAF----------------------------------HVS 307
                ++  +NT +ILFI  GAF                                    +
Sbjct: 228 KHPQQEFIRLNTANILFIVGGAFIGLEKIVGQRMRGTAMGFGAKVEARHDDDMSRMLSQA 287

Query: 308 RPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            PADL+     PE  GR P+   L+ L K D   ILT+ ++ L+ QY++L + + + L F
Sbjct: 288 HPADLIKFGLIPEFIGRIPILTSLEELTKDDLVRILTEPKNALVKQYQKLFELDKVRLRF 347

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           T++++DA+A+ A+   +     GAR L+ VME ++ +I +    L   K  V++   V  
Sbjct: 348 TKNAMDAIAEKAIERKT-----GARGLRNVMESIMLEIMYKLPSLSGVKECVVNKAVVEK 402

Query: 422 HIGDFP 427
            +    
Sbjct: 403 GLEPLL 408



 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R            E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAAADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 122 SGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAASR 177


>gi|300856722|ref|YP_003781706.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300436837|gb|ADK16604.1| ATP-dependent Clp protease, ATP-binding subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 429

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 65/348 (18%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            +  + A  +         +    +++  D+E+  +     N  + G    G   L++  
Sbjct: 74  VIGQEDAKKSLSVAVYNHYKRINSNNQNDDVELQKS-----NILLLGPTGSGKTLLAQTL 128

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           +K +          ++ +    +  D  + L+ +       I+  E +GIV++DE DKI 
Sbjct: 129 AKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADYDIERAE-HGIVYIDEIDKIA 186

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
            +     I   VS EGVQ+ LL ++EG+  S            ++  INT +ILFI  GA
Sbjct: 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTTNILFICGGA 246

Query: 304 F----------------------HVSRPAD-----------------LLPEIQGRFPVRV 324
           F                         +  D                 L+PE  GR P+ V
Sbjct: 247 FDGIDNIIERRTRVSTLGFGAEIQSKKEKDIGKLLKDIMPGDLLKFGLIPEFVGRIPIIV 306

Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384
            L++L++S    IL + ++ LI QYK+L + + + L+F ED+++A++D A+  N+     
Sbjct: 307 TLEALDRSALVRILKEPKNALIKQYKKLFEFDDVELEFKEDALEAISDEALKRNT----- 361

Query: 385 GARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           GAR L+ ++E  ++D+ F     +E   V+ID   V     +     D
Sbjct: 362 GARGLRAIIEETMKDVMFDIPSKEEIAKVIIDKNAVDTKKPELIEAED 409



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 7/229 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +T    P EI + LD+Y+IGQ+DAK+++++A+ N ++R        D EL   NILL+
Sbjct: 55  IDMTSIPKPVEIKNYLDQYVIGQEDAKKSLSVAVYNHYKRINSNNQNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  +  
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAEH 174

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +N   I GGA  GI N+ E  ++V   G   +I+   +K   +L++D
Sbjct: 235 NTTNILFICGGAFDGIDNIIERRTRVSTLGFGAEIQSKKEKDIGKLLKD 283


>gi|326386906|ref|ZP_08208520.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208586|gb|EGD59389.1| ATP-dependent protease ATP-binding subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 417

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 132/309 (42%), Gaps = 64/309 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  + S K  ++E++ +     N  + G    G   L++  +K            ++
Sbjct: 94  NHYKRLKHSGKGGEVELSKS-----NILLVGPTGSGKTLLAQTLAKTFDVPFTMADATTL 148

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  + +GIV++DE DKI  +     I   VS EG
Sbjct: 149 TEAG-YVGEDVENIILKLLQASDYNVEKAQ-HGIVYIDEIDKISRKAENPSITRDVSGEG 206

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL L+EG++ S            ++  ++T +ILFI  GAF               
Sbjct: 207 VQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIIADRLQKRS 266

Query: 305 -----HVSRPA-------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                HV+ P                     L+PE  GR PV   L  L+      IL +
Sbjct: 267 IGFGAHVADPDKRRVGELLQKAEPEDLLKFGLIPEFVGRLPVIATLNDLDIDALVRILRE 326

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY++L + E + L FTE++++A+A  A+   +     GAR L++++E +L D 
Sbjct: 327 PKNALVKQYQKLFELEDVQLTFTEEALEAIAKKAIERKT-----GARGLRSIVEGLLLDT 381

Query: 401 SFSASDLQE 409
            F    L  
Sbjct: 382 MFDLPTLDG 390



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I   L+ Y+IGQ  AKR +++A+ N ++R +      + EL   NILLVGPTG GK
Sbjct: 66  TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGEVELSKSNILLVGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++   V    
Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQHGIVYIDE 185

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  AE   I   + G+       ++                 +      D +N   
Sbjct: 186 IDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILF 245

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              ++    L + E + L+
Sbjct: 246 ICGGAFAGLERIIADRLQKRSIGFGAHVADPDKRRVGELLQKAEPEDLL 294


>gi|284990115|ref|YP_003408669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
 gi|284063360|gb|ADB74298.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
          Length = 423

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 113 SNILLMGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 172 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 231 PHQEFIQIDTTNVLFIVGGAFAGLEKIIEQRAGKQGIGFGAEVRGKKEIEEANAFAEVMP 290

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   ++ L++     ILT+ ++ L+ QY+ L + +G+ L+FT+
Sbjct: 291 EDLLKFGMIPEFIGRLPVITSVEKLDRDALMNILTEPKNALVRQYRRLFELDGVELEFTD 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++++AD A+   +     GAR L+ +ME VL+ + +      +  +VVI  E V  H+
Sbjct: 351 DALESIADQAILRGT-----GARGLRAIMEEVLQSVMYDVPSRDDVASVVITREVVLEHV 405

Query: 424 G 424
            
Sbjct: 406 N 406



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNI 56
           +K      P+EI   L++Y+IGQ  AKRA+++A+ N ++R Q       D   EL   NI
Sbjct: 56  LKFDELPKPKEIHDFLEQYVIGQDKAKRALSVAVYNHYKRVQAGGAGSRDDSVELAKSNI 115

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+ 
Sbjct: 116 LLMGPTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKR 175

Query: 117 SR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +       DEV + A  +    I   + G+       ++                     
Sbjct: 176 AETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEF 235

Query: 172 TSSDISN-FDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKC 215
              D +N   I GGA  G+  + E     + +G G + + +  +++ 
Sbjct: 236 IQIDTTNVLFIVGGAFAGLEKIIEQRAGKQGIGFGAEVRGKKEIEEA 282


>gi|116333989|ref|YP_795516.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           ATCC 367]
 gi|122269327|sp|Q03QN7|CLPX_LACBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116099336|gb|ABJ64485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           brevis ATCC 367]
          Length = 418

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 61/311 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           + +        SN  + G    G   L++  +K++          ++ +    +  D  +
Sbjct: 102 ETDDDGPELQKSNIAVIGPTGSGKTYLAQSLAKILNVPFAIADATTLTEAG-YVGEDVEN 160

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       +   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 161 ILLKLLQNADYDVDRAEK-GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTI 219

Query: 284 VST-----------KYGSINTDHILFIASGAF-------------------------HVS 307
            +            ++  I+T +ILFI  GAF                         HV 
Sbjct: 220 ANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEGIVKRRLGDQTIGFGADSQEQHVL 279

Query: 308 RPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
              D               L+PE  GR P+   L+ L+++D   ILT+ ++ L+ QY++L
Sbjct: 280 SSGDSLMQHVIPEDLLEFGLIPEFIGRLPILTALEKLDENDLVRILTEPKNALVKQYEKL 339

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-T 411
           +  + + L F   ++  +A +A+  N+     GAR L++++E V+ DI F      +   
Sbjct: 340 LALDNVDLQFQPAALREMAKLAIARNT-----GARGLRSIIEDVMRDIMFDLPSRTDVAK 394

Query: 412 VVIDAEYVRLH 422
           VVI  E V  H
Sbjct: 395 VVITPETVTEH 405



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           +P +IV  L++Y+IGQ +AKR +++A+ N ++R    A   D    EL   NI ++GPTG
Sbjct: 63  TPADIVKTLNQYVIGQTEAKRTLSVAVYNHYKRVNEMAQETDDDGPELQKSNIAVIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + +    
Sbjct: 123 SGKTYLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVDRAEKGIIY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A       I   + G+       ++    + +          +      D +N
Sbjct: 183 IDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTN 242

Query: 179 F-DIPGGASVGILNL 192
              I GGA  GI  +
Sbjct: 243 ILFIVGGAFDGIEGI 257


>gi|256832189|ref|YP_003160916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
 gi|256685720|gb|ACV08613.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia
           denitrificans DSM 20603]
          Length = 425

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 139/317 (43%), Gaps = 63/317 (19%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            ++ D   DI++A +     N  + G    G   L++  ++++          ++ +   
Sbjct: 102 PKVGDNHDDIDLAKS-----NILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAG- 155

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ L
Sbjct: 156 YVGEDVENILLKLIQAADFDVKKAET-GIIYIDEIDKIARKAENPSITRDVSGEGVQQAL 214

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------------- 304
           L ++EG++ S            ++ +I+T ++LFI +GAF                    
Sbjct: 215 LKIIEGTTASVPPQGGRKHPHQEFITIDTSNVLFIVAGAFAGLEDIISQRTGKRGIGFGA 274

Query: 305 ------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL     +PE  GR PV   +  L+      ILT+  + L+ 
Sbjct: 275 PLALPGDSANILSRVMPEDLHKFGLIPEFIGRLPVMTTVNELDVDALVSILTEPRNALVK 334

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+++   + + L+FT+D+I A+A+ A+   +     GAR L++++E VL+ + F     
Sbjct: 335 QYRKMFALDDVDLEFTDDAIRAVAEQALLRGT-----GARGLRSILEEVLQQVMFEVPSR 389

Query: 408 QE-KTVVIDAEYVRLHI 423
            + + V+I  E V   +
Sbjct: 390 TDVEKVLITREVVLDKV 406



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVG 60
            P+EI   L+ YI+GQ  AK+++A+A+ N ++R                +L   NILL+G
Sbjct: 63  KPQEIFDFLEEYIVGQDTAKKSLAVAVYNHYKRITATDAPKVGDNHDDIDLAKSNILLIG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDVKKAETG 182

Query: 119 ---RDEVREQASINAEERI 134
               DE+ + A       I
Sbjct: 183 IIYIDEIDKIARKAENPSI 201


>gi|268678828|ref|YP_003303259.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616859|gb|ACZ11224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 412

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 57/305 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++ +          S+ +    +  D  + L  +      
Sbjct: 111 SNILLIGPTGSGKTLMAQTLARFLDVPIAISDATSLTEAG-YVGEDVENILTKLLQCANG 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 170 DVKKAEQ-GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAFH--------------------------------VSRPAD 311
              ++  I+T +ILF+ +GAF                                 +  P D
Sbjct: 229 PNQEFIQIDTTNILFVCAGAFDGLEEIIKRRIGKNVLGFEQEKRSKSQDNGLFDLVEPDD 288

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR  V   L  + K D   ILT+ ++ +  QY++L   + + L F +++
Sbjct: 289 LVHYGLIPELIGRLHVTAKLSPITKEDMVRILTEPKNAIYKQYQKLFGIDNVELTFEKEA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++A+A++A+   +     GAR L+++ME ++ D+ +   +L+   V++  + V+      
Sbjct: 349 LEAVAELAIKRKT-----GARGLRSIMEELMVDVMYELPELEGYEVIVTKDAVQKGEKPL 403

Query: 427 PSETD 431
             + D
Sbjct: 404 YVKKD 408



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
            +P+E+   LD ++IGQ  AK+  ++ + N ++R    + + D  E+   NILL+GPTG 
Sbjct: 62  LTPKELKKVLDDFVIGQDQAKKVFSVGVYNHYKRIFKQSMMSDDTEISKSNILLIGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++       
Sbjct: 122 GKTLMAQTLARFLDVPIAISDATSLTEAGYVGEDVENILTKLLQCANGDVKKAEQGIVFI 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A ++    I   + G+       ++    + +                 D +N 
Sbjct: 182 DEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIQIDTTNI 241

Query: 180 -DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
             +  GA  G+  + +  +   V+G  ++K+ +      +  +  D
Sbjct: 242 LFVCAGAFDGLEEIIKRRIGKNVLGFEQEKRSKSQDNGLFDLVEPD 287


>gi|289641546|ref|ZP_06473708.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
 gi|289508641|gb|EFD29578.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia
           symbiont of Datisca glomerata]
          Length = 430

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 62/310 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 114 SNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 173 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 232 PHQEFIQIDTTNVLFIVGGAFAGLDRIIDARIGKKSLGFRAVLHGKDDPDAAKVFSDVMP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+   + +L++     ILT+ ++ L+ QYK+L + +G+ LDFT 
Sbjct: 292 EDLLKYGMIPEFIGRLPMITSVSNLDREALIRILTEPKNALVRQYKKLFELDGVDLDFTA 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D++DA+AD A+   +     GAR L+ +ME VL  + +     ++    V+  E V  H+
Sbjct: 352 DALDAIADQAILRGT-----GARGLRAIMEEVLLSVMYDIPSRKDVARAVVTREVVLEHV 406

Query: 424 GD--FPSETD 431
                P + D
Sbjct: 407 NPTLVPRDRD 416



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
            PREI   LD Y++GQ+ AK+ +++A+ N ++R Q      D     EL   NILL+GPT
Sbjct: 63  KPREIYEFLDSYVVGQEQAKKILSVAVYNHYKRVQAGGAGGDAKGDVELAKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++     
Sbjct: 123 GCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV + A  +    I   + G+       ++                        D +
Sbjct: 183 YIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTT 242

Query: 178 NFDIPGGASVGILN 191
           N     G +   L+
Sbjct: 243 NVLFIVGGAFAGLD 256


>gi|190573023|ref|YP_001970868.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia K279a]
 gi|254524793|ref|ZP_05136848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
 gi|229485949|sp|B2FQR3|CLPX_STRMK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|190010945|emb|CAQ44554.1| ATP-dependent clp protease ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia K279a]
 gi|219722384|gb|EED40909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas sp. SKA14]
          Length = 429

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVGKTATSNTREV-----FRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L       N  +           + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQNRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  D+E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRQKNDDVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDV 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GSIGFGAKVKSSERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L + E + L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYDLPSQENVSKVVVDESVIEHK 408



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +      D EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      ++         +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQARSTDVGSIGFGAKVKSSERKQEVGKVLAEVEPEDLI 298


>gi|227486248|ref|ZP_03916564.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235659|gb|EEI85674.1| ATP dependent protease ATP-binding subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 404

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 59/314 (18%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
             I+  E D EV    S   N  + G    G   L++  ++ +          S+ +   
Sbjct: 93  KRITSNEDDSEVELQKS---NILMLGPTGSGKTLLAQTLARKLNVPFAIADATSLTEAG- 148

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D  + ++ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ L
Sbjct: 149 YVGEDVENIILKLVQAADYDIEAAE-LGIIYVDEIDKITRKSENPSITRDVSGEGVQQAL 207

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAFH------VSRPAD------- 311
           L L+EG+  +            +Y  ++T +ILFI  GAF         R  D       
Sbjct: 208 LKLIEGTEANVPPQGGRKHPSQEYIRVDTTNILFILGGAFEGIGNIINQRQMDKTIGFGA 267

Query: 312 ----------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                 L+PE  GR P+ V L +L++     IL + +++LI QY
Sbjct: 268 DITKREKTDLSMVNTDDLLKFGLIPEFIGRVPIIVSLDALDEEALVRILKEPKNSLIKQY 327

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L   + + L F +D+I  +A  A +  +     GAR L+T++E +L D+ +      E
Sbjct: 328 QKLFDLDDVKLSFNDDAISEIAKKAYDQKT-----GARGLRTIIENLLLDVMYEIPSRDE 382

Query: 410 -KTVVIDAEYVRLH 422
            K V++  E +  H
Sbjct: 383 IKEVIVTKESIDDH 396



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I + LD Y+IGQ+DAK+ +++A+ N ++R     D  + EL   NIL++GPTG GK
Sbjct: 62  KPKDIKAYLDSYVIGQEDAKKTLSVAVYNHYKRITSNEDDSEVELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A   +  + 
Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIEAAE 173


>gi|296270439|ref|YP_003653071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
 gi|296093226|gb|ADG89178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobispora
           bispora DSM 43833]
          Length = 427

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 60/311 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILLLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 171 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 230 PHQEFIQIDTTNVLFICGGAFAGLEKIIEQRIGKKGIGFNAVLRSREEMDSSDIFAEVMP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L+++    ILT  ++ L+ QY+ L + + + L+FT+
Sbjct: 290 EDLLKYGMIPEFVGRLPVITSVHNLDRNALIQILTKPKNALVKQYRRLFELDNVELEFTD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +     Q+   VVI  E V  ++
Sbjct: 350 DALEAIADQAILRGT-----GARGLRAIMEEVLLSVMYEVPSRQDIARVVITREVVLENV 404

Query: 424 GDFPSETDMYH 434
                  D Y 
Sbjct: 405 NPTLVPRDQYQ 415



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 9/197 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
            PREI   LD Y++GQ  AK+A+++A+ N ++R Q     RD   EL   NILL+GPTG 
Sbjct: 63  KPREIYEFLDSYVVGQDKAKKALSVAVYNHYKRIQSGNRARDDGLELAKSNILLLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++       
Sbjct: 123 GKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178
           DEV + A  +    I   + G+       ++                        D +N 
Sbjct: 183 DEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNV 242

Query: 179 FDIPGGASVGILNLSEL 195
             I GGA  G+  + E 
Sbjct: 243 LFICGGAFAGLEKIIEQ 259


>gi|194364615|ref|YP_002027225.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas
           maltophilia R551-3]
 gi|238693450|sp|B4SLN2|CLPX_STRM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194347419|gb|ACF50542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Stenotrophomonas maltophilia R551-3]
          Length = 429

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 149/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVGKTATSNTREV-----FRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L       N  +           + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQNRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  ++E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRQKNDEVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDV 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GSIGFGAKVKSAERKQEVGKVLAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L + E + L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFEMENVELEFRPDALSAIARKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYDLPSQENVSKVVVDESVIEHK 408



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +    +   EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      ++         +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQARSTDVGSIGFGAKVKSAERKQEVGKVLAEVEPEDLI 298


>gi|319405543|emb|CBI79162.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. AR 15-3]
          Length = 424

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 95  NHYKRLAHQSKSNDVELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 150 TEAG-YVGEDVENIILKLLQSADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 207

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTS 267

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR PV   L+ L+      IL+ 
Sbjct: 268 IGFSAAVKAPDERRVGEIFRDLEPEDLIKFGLIPEFIGRLPVIATLEDLDICALVQILSQ 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++  +A  A+   +     GAR L+++MER+L D 
Sbjct: 328 PKNALVKQYQRLFEMENVQLVFHEDALRVIAKKAIERKT-----GARGLRSIMERILLDT 382

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L   + VVI ++ V   
Sbjct: 383 MFELPALVGVQEVVISSDVVEGK 405



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 247 ICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKF 297


>gi|118618989|ref|YP_907321.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           ulcerans Agy99]
 gi|166214791|sp|A0PU31|CLPX_MYCUA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118571099|gb|ABL05850.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium
           ulcerans Agy99]
          Length = 426

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q      D      EL   
Sbjct: 56  VKLDELPKPVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSHDSRCEAVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|154174197|ref|YP_001407541.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           curvus 525.92]
 gi|112803786|gb|EAU01130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           curvus 525.92]
          Length = 411

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 57/295 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K +          S+ +    +  D  + L  +      
Sbjct: 110 SNILLVGPTGSGKTLMAQTLAKFLDVPIAICDATSLTEAG-YVGEDVENILTRLLQAANG 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 169 DVKRAEQ-GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 227

Query: 288 ----YGSINTDHILFIASGAF--------------------------------HVSRPAD 311
               +  I+T +ILF+  GAF                                 +  P D
Sbjct: 228 PNQDFIQIDTTNILFVCGGAFDGLVDIIERRVGKNILGFNQEKRGKAEREDLLSLLEPDD 287

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR  V   L  + + D   ILT+ ++ ++ QY++L   +G  L F +D+
Sbjct: 288 LVHFGLIPELIGRLHVVATLNEITQEDMVKILTEPKNAILKQYQKLFAIDGATLKFDDDA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +  +A +A+   +     GAR L+++ME ++ DI +   +L++  VVI  E V+ 
Sbjct: 348 LKEVAALAIERKT-----GARGLRSIMEEIMTDIMYDLPELKDYEVVISKEVVKD 397



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           N +P+++ S LD Y+IGQ  AK+  ++ + N ++R    ++++D  E+   NILLVGPTG
Sbjct: 60  NLTPKQLKSVLDSYVIGQDRAKKVFSVGVYNHYKRIFKQSNIKDDTEISKSNILLVGPTG 119

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ + +    
Sbjct: 120 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANGDVKRAEQGIVF 179

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    + +                 D +N
Sbjct: 180 VDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDTTN 239

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
              + GGA  G++++ E  +   ++G  ++K+ +   +     L  D
Sbjct: 240 ILFVCGGAFDGLVDIIERRVGKNILGFNQEKRGKAEREDLLSLLEPD 286


>gi|15609594|ref|NP_216973.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis H37Rv]
 gi|31793638|ref|NP_856131.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           bovis AF2122/97]
 gi|148662292|ref|YP_001283815.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis H37Ra]
 gi|148823657|ref|YP_001288411.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis F11]
 gi|167969782|ref|ZP_02552059.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|215404393|ref|ZP_03416574.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 02_1987]
 gi|215412214|ref|ZP_03420976.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427840|ref|ZP_03425759.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T92]
 gi|215431403|ref|ZP_03429322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis EAS054]
 gi|215446703|ref|ZP_03433455.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T85]
 gi|218754189|ref|ZP_03532985.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis GM 1503]
 gi|219558454|ref|ZP_03537530.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T17]
 gi|253798464|ref|YP_003031465.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232591|ref|ZP_04925918.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis C]
 gi|254365233|ref|ZP_04981279.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551505|ref|ZP_05141952.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187464|ref|ZP_05764938.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201582|ref|ZP_05769073.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|260205761|ref|ZP_05773252.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis K85]
 gi|289443983|ref|ZP_06433727.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|289448100|ref|ZP_06437844.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553752|ref|ZP_06442962.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 605]
 gi|289570612|ref|ZP_06450839.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T17]
 gi|289575151|ref|ZP_06455378.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis K85]
 gi|289746239|ref|ZP_06505617.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|289751063|ref|ZP_06510441.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T92]
 gi|289754565|ref|ZP_06513943.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis EAS054]
 gi|289758589|ref|ZP_06517967.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T85]
 gi|289762626|ref|ZP_06522004.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis GM 1503]
 gi|294994435|ref|ZP_06800126.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis 210]
 gi|297635063|ref|ZP_06952843.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732054|ref|ZP_06961172.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN R506]
 gi|298525935|ref|ZP_07013344.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776726|ref|ZP_07415063.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu001]
 gi|306780500|ref|ZP_07418837.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu002]
 gi|306785252|ref|ZP_07423574.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu003]
 gi|306789611|ref|ZP_07427933.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu004]
 gi|306793938|ref|ZP_07432240.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu005]
 gi|306798332|ref|ZP_07436634.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu006]
 gi|306804208|ref|ZP_07440876.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu008]
 gi|306808778|ref|ZP_07445446.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu007]
 gi|306968610|ref|ZP_07481271.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu009]
 gi|306972837|ref|ZP_07485498.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu010]
 gi|307080542|ref|ZP_07489712.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu011]
 gi|313659390|ref|ZP_07816270.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis KZN V2475]
 gi|61221150|sp|P0A528|CLPX_MYCTU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|61221151|sp|P0A529|CLPX_MYCBO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214790|sp|A5U5F3|CLPX_MYCTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2791497|emb|CAA16034.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
           [Mycobacterium tuberculosis H37Rv]
 gi|31619231|emb|CAD97345.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
           [Mycobacterium bovis AF2122/97]
 gi|124601650|gb|EAY60660.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis C]
 gi|134150747|gb|EBA42792.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506444|gb|ABQ74253.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis H37Ra]
 gi|148722184|gb|ABR06809.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis F11]
 gi|253319967|gb|ACT24570.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 1435]
 gi|289416902|gb|EFD14142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis T46]
 gi|289421058|gb|EFD18259.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438384|gb|EFD20877.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 605]
 gi|289539582|gb|EFD44160.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis K85]
 gi|289544366|gb|EFD48014.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T17]
 gi|289686767|gb|EFD54255.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
           tuberculosis 02_1987]
 gi|289691650|gb|EFD59079.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T92]
 gi|289695152|gb|EFD62581.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis EAS054]
 gi|289710132|gb|EFD74148.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis GM 1503]
 gi|289714153|gb|EFD78165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis T85]
 gi|298495729|gb|EFI31023.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214887|gb|EFO74286.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu001]
 gi|308326648|gb|EFP15499.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu002]
 gi|308330074|gb|EFP18925.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu003]
 gi|308333914|gb|EFP22765.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu004]
 gi|308337717|gb|EFP26568.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu005]
 gi|308341398|gb|EFP30249.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu006]
 gi|308344884|gb|EFP33735.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu007]
 gi|308349195|gb|EFP38046.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu008]
 gi|308353816|gb|EFP42667.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu009]
 gi|308357765|gb|EFP46616.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu010]
 gi|308361710|gb|EFP50561.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis SUMu011]
 gi|326904071|gb|EGE51004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis W-148]
 gi|328458232|gb|AEB03655.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium
           tuberculosis KZN 4207]
          Length = 426

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|315453105|ref|YP_004073375.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
 gi|315132157|emb|CBY82785.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           felis ATCC 49179]
          Length = 446

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 152/389 (39%), Gaps = 77/389 (19%)

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASI---------NAEERILD-----------ALVG 140
           ++  DL   A+++ R  R +    QAS          N  + ILD               
Sbjct: 46  ELHTDLHPSALDLQRLERIENSLPQASKSSDTLVPSPNVLKEILDNYVVGQEEAKRVFSV 105

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
                  R   ++K +  +      +  + D     SN  + G    G   +++  ++ +
Sbjct: 106 AVYNHYKRLNHQEKQKQRQRIKASENESLDDVEISKSNILLVGPTGSGKTLMAQTLARFL 165

Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260
                     S+ +    +  D  + L  +       ++  +  GIVF+DE DKI     
Sbjct: 166 NIPIAISDATSLTEAG-YVGEDVENILTRLLQASDGDVERAQ-RGIVFIDEIDKIARLSE 223

Query: 261 GNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--- 304
              I   VS EGVQ+ LL ++EGS V+             +  I+T +ILFI  GAF   
Sbjct: 224 NRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHPNENFVQIDTTNILFICGGAFDGI 283

Query: 305 -----------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLN 330
                                        H+  P DL+     PE+ GR PV   LK ++
Sbjct: 284 IDIIKRRIHSNVLGFGNEKKTKEQLEDILHLVGPEDLINYGLIPELIGRLPVISTLKPIS 343

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           K     IL   ++ LI QY++L K + + L F  ++I+ +A+ A+        +GAR L+
Sbjct: 344 KEAMVDILLKPKNALIKQYQQLFKMDDVDLVFEPEAIEEIANQAIKRK-----VGARGLR 398

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYV 419
           +++E    D+ F    L++  VVI    V
Sbjct: 399 SIIESFSLDVMFDLPSLKDYQVVITKGCV 427



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 23/238 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---------------LRDELM 52
           SP  +   LD Y++GQ++AKR  ++A+ N ++R                        E+ 
Sbjct: 81  SPNVLKEILDNYVVGQEEAKRVFSVAVYNHYKRLNHQEKQKQRQRIKASENESLDDVEIS 140

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILLVGPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 141 KSNILLVGPTGSGKTLMAQTLARFLNIPIAISDATSLTEAGYVGEDVENILTRLLQASDG 200

Query: 113 IVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V  ++R     DE+ + A ++    I   + G+       ++    + +          
Sbjct: 201 DVERAQRGIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHP 260

Query: 168 EVADTSSDISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
                  D +N   I GGA  GI+++ +  + S V+G G +KK +  ++     +  +
Sbjct: 261 NENFVQIDTTNILFICGGAFDGIIDIIKRRIHSNVLGFGNEKKTKEQLEDILHLVGPE 318


>gi|284030230|ref|YP_003380161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
 gi|283809523|gb|ADB31362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella
           flavida DSM 17836]
          Length = 431

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 135/307 (43%), Gaps = 59/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 119 SNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 177

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 178 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 236

Query: 287 ---KYGSINTDHILFIASGAF----HVSR-----------------------------PA 310
              ++  I+T ++LFI  GAF    H+                               P 
Sbjct: 237 PHQEFIQIDTTNVLFIVGGAFAGLDHMVEQRVGKKTLGFNTSREPEKPKEVSGYSDVMPE 296

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DLL     PE  GR PV   +  L++     IL++ ++ L+ QY+ L + + + L+F+ED
Sbjct: 297 DLLKFGLIPEFIGRLPVITTVSPLDRDALIKILSEPKNALVKQYRRLFEIDNVELEFSED 356

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIG 424
           +++A+AD A+   +     GAR L+ +ME VL ++ +     ++   VV+  E V  ++ 
Sbjct: 357 AVEAIADQALLRGT-----GARGLRAIMEEVLLNVMYEVPSREDVAKVVVTGEVVLENVN 411

Query: 425 DFPSETD 431
                 D
Sbjct: 412 PTLIPRD 418



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 15/206 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDELM 52
           LT    PREI   L+ Y++GQ  AK+A+A+A+ N ++R +             D   EL 
Sbjct: 58  LTELPKPREIYDFLNAYVVGQDVAKKALAVAVYNHYKRVRDGQGTSSAGRHAKDEAVELA 117

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A  
Sbjct: 118 KSNILLIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADY 177

Query: 113 IVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++       DEV + A  +    I   + G+       ++                 
Sbjct: 178 DVKKAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHP 237

Query: 168 EVADTSSDISNFDIPGGASVGILNLS 193
                  D +N     G +   L+  
Sbjct: 238 HQEFIQIDTTNVLFIVGGAFAGLDHM 263


>gi|289616254|emb|CBI57050.1| unnamed protein product [Sordaria macrospora]
          Length = 647

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 151/404 (37%), Gaps = 61/404 (15%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +  +   A  R ++   N+LL+GPTGVGKT I   L++    PF   +   FT+ GY+G+
Sbjct: 236 YIPEDTNAPQRVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQ 295

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE  I  L+  A   V+ +    V     ++  ++I               V +  L+ 
Sbjct: 296 DVEACIERLLIEANYDVKAAEHGIV----VLDEFDKIARRETVNGRDVGGEGVQQALLKL 351

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E +   ++++   +S      ++              +     +      +        
Sbjct: 352 VEGTKVTVNVKDHRSSKPPPPPNLNISTPG--------YGPASTTPSITPGK-------- 395

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE-------- 269
                     ++   V   +I  V     V LD+   ++ R +   IG   E        
Sbjct: 396 ----------VEQYIVDTSNILFVFCGAFVGLDK--TVLRRVAKPSIGFGAEVRNHRVSS 443

Query: 270 --GVQRDLLPLV------EGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEI 316
             G Q  L P +      +  ++       +             ++ PADL     +PE+
Sbjct: 444 MSGSQDILPPELYSHLPHQPPTMPVDLSGGSLASSGGSGFTPLDLASPADLQAFGFIPEL 503

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR      L  L+  +   ILT+  ++L+ QY  L +T    L FT  ++ A+A+ A  
Sbjct: 504 IGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKLYFTRKALYAIAEKAAK 563

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
             +     GAR L+  MERVL +  + A       V+I    V+
Sbjct: 564 NET-----GARGLKMEMERVLAEPMYDAP---MPYVLITEGCVK 599



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 103/298 (34%), Gaps = 38/298 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           F PR++   +D Y++GQ  AK+ +   + N ++  +       +       L       +
Sbjct: 82  FYPRDLKRRVDDYVVGQDRAKKTICSVIFNHYQNIRRRQHHEVQDQRLREKLQRQRYS-R 140

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
               R L                   GY G +        V+       E   D   +  
Sbjct: 141 DNRDRDLQDR---------------EGYSGSSSSNRDIHPVEGGRRSPLEPWLDPPPKPR 185

Query: 127 SINAEERILDALVGKTATS-------------NTREVFRKKLRDGEISDKEIDIEVADTS 173
              A++RIL+        S                ++    L    + D  I  +     
Sbjct: 186 RQWADKRILEDEFPGHHESVMGTHRDRDRDRDRDHDMVEDHLETTSVDDFYIPEDTNAPQ 245

Query: 174 ---SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLI 228
               D SN  + G   VG   + E  SK +          S  +        E+  +RL+
Sbjct: 246 RVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLL 305

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286
                   + +    +GIV LDEFDKI  R++ NG  V  EGVQ+ LL LVEG+ V+ 
Sbjct: 306 IEANYDVKAAE----HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVTV 359


>gi|160882387|ref|ZP_02063390.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483]
 gi|237719060|ref|ZP_04549541.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4]
 gi|260172006|ref|ZP_05758418.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp.
           D2]
 gi|299148143|ref|ZP_07041205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_23]
 gi|315920319|ref|ZP_07916559.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2]
 gi|156112200|gb|EDO13945.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483]
 gi|229451439|gb|EEO57230.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4]
 gi|298512904|gb|EFI36791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_23]
 gi|313694194|gb|EFS31029.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2]
          Length = 414

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +D  + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y ++ +  
Sbjct: 378 MDVMFEIPSENKKEYKVTLDYAKMQLEK 405



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|74317694|ref|YP_315434.1| ATP-dependent protease ATP-binding subunit ClpX [Thiobacillus
           denitrificans ATCC 25259]
 gi|123772958|sp|Q3SI99|CLPX_THIDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|74057189|gb|AAZ97629.1| ClpX, ATPase regulatory subunit [Thiobacillus denitrificans ATCC
           25259]
          Length = 423

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 140/348 (40%), Gaps = 80/348 (22%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +    A            +    S    D+E+A +     N  + G    G   
Sbjct: 72  ILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKS-----NILLIGPTGSGKTL 126

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYG 245
           L++  ++++          ++ +              D++ + +  +Q  +        G
Sbjct: 127 LAQTLARLLNVPFVIADATTLTEA--------GYVGEDVENIIQKLLQKCDYDVDKAKQG 178

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           IV++DE DKI  +     I   VS EGVQ+ LL L+EG++ S            ++  ++
Sbjct: 179 IVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQVD 238

Query: 293 TDHILFIASGAF-----------------------------------HVSRPADLL---- 313
           T +ILFI  GAF                                   H   P DL+    
Sbjct: 239 TSNILFICGGAFSGLEKVIRGRTEKGGIGFGAQVKNVDENKRDAELLHQVEPEDLIKYGL 298

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE  GR PV   L  L+++    ILT+ ++ L  Q+ +L K EG+ L+F +D+++A+A 
Sbjct: 299 IPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAIAK 358

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            A+   +     GAR L++++E  L D  +    L+    VV+D   +
Sbjct: 359 RALLRRT-----GARGLRSIIEHALLDTMYDLPSLKGVSKVVVDNALI 401



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 14/256 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ  AK+A+A+A+ N ++R +  +   D EL   NILL+GPTG GK
Sbjct: 65  TPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V ++++  V    
Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAKQGIVYIDE 184

Query: 124 -EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  A+   I   + G+       ++                        D SN   
Sbjct: 185 IDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQVDTSNILF 244

Query: 182 PGGAS----VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
             G +      ++        +    + K +  + +     L + E + LI    +    
Sbjct: 245 ICGGAFSGLEKVIRGRTEKGGIGFGAQVKNVDENKRDA-ELLHQVEPEDLIKYGLIPE-- 301

Query: 238 IQMVENYGIVFLDEFD 253
             +     +  LDE D
Sbjct: 302 -FVGRLPVVATLDELD 316


>gi|240170928|ref|ZP_04749587.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           kansasii ATCC 12478]
          Length = 426

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE S       V  T S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKSRDSRHEPVELTKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          V +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L+K     IL
Sbjct: 267 RGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDKESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT+D+++A+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRHEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           denitrificans DSM 1251]
          Length = 414

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 57/294 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++V+          S+ +    +  D  + L  +      
Sbjct: 112 SNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAG-YVGEDVENILTKLLQAADG 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EG+ V+         
Sbjct: 171 DVERAQ-RGIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKH 229

Query: 287 ---KYGSINTDHILFIASGA--------------------------------FHVSRPAD 311
              ++ +I+T  ILFI  GA                                +    P D
Sbjct: 230 PNQEFIAIDTTGILFICGGAFDGLDEILKKKQGENVLGFGHEKKSKKEQKMSYDAVEPDD 289

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR P+   L  + + D   ILT+ ++++I QYK+L   + + L+F ED+
Sbjct: 290 LVNYGLIPELVGRLPIIASLNEITEDDMVRILTEPKNSIIKQYKKLFSIDNVELNFEEDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           + A+A  ++   +     GAR L+ ++E  + DI +   +     V++    + 
Sbjct: 350 LRAIATKSIKRKT-----GARGLRAILEENMIDIMYELPEYGGYEVLVTKAVID 398



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 14/239 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILL 58
           + +   +P+E+   L  YIIGQ+ A++ +++A+ N ++R        D   E+   N+LL
Sbjct: 57  ENSTLMTPKELNLFLADYIIGQERARKLLSVAVYNHYKRIFKTHTTKDDDTEIAKSNVLL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 117 IGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAADGDVERAQ 176

Query: 119 RDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R  V     ++ S  +E R I   + G+       ++    + +               +
Sbjct: 177 RGIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQEFIA 236

Query: 174 SDISNFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            D +      G +   L+     +    V+G G +KK +   +  Y  +   E D L++
Sbjct: 237 IDTTGILFICGGAFDGLDEILKKKQGENVLGFGHEKKSKKEQKMSYDAV---EPDDLVN 292


>gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 424

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 140/327 (42%), Gaps = 65/327 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++R       E D+E+A +     N  + G    G   L++  ++++          
Sbjct: 92  HYKRVRSEGDRPGEEDVEIAKS-----NILLLGPTGSGKTLLAQTLARILNVPFAIADAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS 
Sbjct: 147 ALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKVARKSENPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF             
Sbjct: 205 EGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFICGGAFAGLEKLIESRTGQ 264

Query: 306 -------VSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                  V RP                      ++PE  GR PV   +  L++     IL
Sbjct: 265 QGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGMIPEFVGRLPVITSVHDLDREALIRIL 324

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L+ QY+ L + +G+ L+FT D+++A+A+  +   +     GAR L+ ++E VL 
Sbjct: 325 TEPRNALVKQYQRLFELDGVELEFTPDALNAIAEQGIIRGT-----GARGLRAIIEEVLL 379

Query: 399 DISFSASDLQE-KTVVIDAEYVRLHIG 424
            + +     ++   V+I  E V  ++ 
Sbjct: 380 SVMYEVPSREDVGQVIITRETVIDNVN 406



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 10/197 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTG 63
            PREI   LD Y+IGQ+ AK+A+++A+ N ++R +     P +   E+   NILL+GPTG
Sbjct: 63  KPREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++      
Sbjct: 123 SGKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIY 182

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + A  +    I   + G+       ++                        D +N
Sbjct: 183 IDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTN 242

Query: 179 -FDIPGGASVGILNLSE 194
              I GGA  G+  L E
Sbjct: 243 VLFICGGAFAGLEKLIE 259


>gi|225028672|ref|ZP_03717864.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
 gi|224953982|gb|EEG35191.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353]
          Length = 432

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 111 SNIIMLGPTGSGKTLLAQTLARQLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAQT-GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T +ILFI  GAF          + + +                        
Sbjct: 229 PHQEFLQIDTTNILFICGGAFDGLEKIIENRIGKKSIGFQAEIMEQRKKDVGVLLKQVLP 288

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV V L  L+K     ILT+ +S L+ QY++L + +G+ L FT+
Sbjct: 289 EDFVKFGLIPEFIGRVPVNVSLNPLDKDALVKILTEPKSALVKQYQKLFEMDGVELKFTD 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           D+++A+A+ A+  N+     GAR L+++ME V+ D+ ++       ++  I  E V 
Sbjct: 349 DALEAIAEKAIARNT-----GARGLRSIMESVVMDLMYTIPSDDLVESCTITKETVD 400



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 7/229 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+E+ + LD Y+IGQ +AK+ +++A+ N ++R         EL   NI+++GPTG GK
Sbjct: 64  MKPKEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRILAGGSYDVELQKSNIIMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  ++      DE
Sbjct: 124 TLLAQTLARQLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIERAQTGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +                   D +N   
Sbjct: 184 IDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQIDTTNILF 243

Query: 181 IPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  + E    K     + + +    +     L +   +  +
Sbjct: 244 ICGGAFDGLEKIIENRIGKKSIGFQAEIMEQRKKDVGVLLKQVLPEDFV 292


>gi|121638340|ref|YP_978564.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224990834|ref|YP_002645521.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|166214786|sp|A1KLF3|CLPX_MYCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763856|sp|C1AES4|CLPX_MYCBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|121493988|emb|CAL72465.1| Probable ATP-dependent clp protease ATP-binding subunit clpX
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773947|dbj|BAH26753.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 426

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGARKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|183983779|ref|YP_001852070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           marinum M]
 gi|238690940|sp|B2HNG2|CLPX_MYCMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|183177105|gb|ACC42215.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium
           marinum M]
          Length = 426

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRCEAVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|37523765|ref|NP_927142.1| ATP-dependent protease ATP-binding subunit ClpX [Gloeobacter
           violaceus PCC 7421]
 gi|46576419|sp|Q7NDN9|CLPX_GLOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|35214770|dbj|BAC92137.1| clpX [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 130/320 (40%), Gaps = 68/320 (21%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             E S  E++I+        SN  + G    G   L++  + ++          ++ +  
Sbjct: 114 KLEESGDEVEIQK-------SNILLIGPTGCGKTLLAQTLADLLDVPFAIADATTLTEAG 166

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +  V    ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 167 -YVGEDVENILLRLLQVADGEVERAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 224

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            +Y  I+T +ILF+  GAF                   
Sbjct: 225 LLKMLEGTVANVPPQGGRKHPYQEYIQIDTANILFVCGGAFVGLERVVEQRIGKRAMGFV 284

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR P+   L+ L++     ILT+ ++
Sbjct: 285 QAGEPQKREQRLVESLKALEPDDLVKFGLIPEFIGRIPMVAVLEPLDEEALIEILTEPKN 344

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L++ +G+ + F  D+I  +A  A    +     GAR L+ ++E ++ ++ + 
Sbjct: 345 ALLKQYQRLLRMDGVEMVFEPDAIKTIAQEAFRRKT-----GARALRGIVEELMLEVMYE 399

Query: 404 ASDL-QEKTVVIDAEYVRLH 422
                  +  VI  E V   
Sbjct: 400 VPSRADIRKCVITREMVEKR 419



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 14/234 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
            P+EI S LD+++IGQQ+AK+ +++A+ N ++R       +    E+   NILL+GPTG 
Sbjct: 78  KPQEIKSYLDQHVIGQQEAKKILSVAVYNHYKRLSSKLEESGDEVEIQKSNILLIGPTGC 137

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+ VA   V  ++R     
Sbjct: 138 GKTLLAQTLADLLDVPFAIADATTLTEAGYVGEDVENILLRLLQVADGEVERAQRGIIYI 197

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +                 D +N 
Sbjct: 198 DEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQEYIQIDTANI 257

Query: 180 -DIPGGASVGILNLSEL-----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             + GGA VG+  + E          + +G  +K    + +    L  D+  + 
Sbjct: 258 LFVCGGAFVGLERVVEQRIGKRAMGFVQAGEPQKREQRLVESLKALEPDDLVKF 311


>gi|20807120|ref|NP_622291.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479267|ref|ZP_05092610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydibrachium pacificum DSM 12653]
 gi|23813862|sp|Q8RC24|CLPX_THETN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|20515614|gb|AAM23895.1| ATP-dependent protease Clp, ATPase subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034805|gb|EEB75536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Carboxydibrachium pacificum DSM 12653]
          Length = 425

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 60/298 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLRLIQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T +ILFI  GAF          + + +                        
Sbjct: 227 PHQEFIQIDTTNILFICGGAFEGIDKIIESRIGKKSLGFGAEVQSKKEKDVGEILKHIMP 286

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  ++PE  GR P+ V L  L K D   ILT+ ++ L+ QY++L + +G+ L+F +
Sbjct: 287 EDLLKFGMIPEFIGRVPIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
            ++D +A++A+   +     GAR L+ ++E ++ D+ +    D   +  +I  E VR 
Sbjct: 347 KALDLIAEMALERGT-----GARGLRAILEDIMLDVMYEIPSDETIEKCIITEETVRK 399



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI + LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MAMRDLPKPKEIKAFLDQYVIGQDRAKKALAVAVYNHYKRINSKVKSDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   +  + +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLRLIQAADYDIERAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSK----VMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D +N   I GGA  GI  + E          G+  + K    V +    +M ++  + 
Sbjct: 235 DTTNILFICGGAFEGIDKIIESRIGKKSLGFGAEVQSKKEKDVGEILKHIMPEDLLKF 292


>gi|256371560|ref|YP_003109384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008144|gb|ACU53711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 419

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 58/297 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 111 SNVLLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADF 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DVKRAET-GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------HVSRPAD 311
              ++  I+T +ILFI  GAF                                   +P D
Sbjct: 229 PHQEFIQIDTSNILFICGGAFVGLDEIVAARLGHRGIGFTGSLAERDGGENILARVQPED 288

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           LL     PE  GR P+   +++L++     ILT+ ++ L+ QY++++  +G+ L+ T  +
Sbjct: 289 LLRFGLLPEFIGRLPIVGTIENLDRDALISILTEPKNALVKQYQKVLAMDGVELEITPSA 348

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++A+AD+A+   +     GAR L+ +ME VL D+ F      + +  VID + V  H
Sbjct: 349 LEAIADLALLRGT-----GARGLKAIMEEVLLDVMFDLPSRSDVQRCVIDRDVVLEH 400



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 5/189 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI+  L+ Y++GQ+ AK+ +++A+ N ++R +  A    EL   N+LL+GPTG GKT
Sbjct: 65  KPAEIMEFLNAYVVGQESAKKILSVAVYNHYKRIRSGAKDDVELQKSNVLLLGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+ +       DE+
Sbjct: 125 LLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDVKRAETGIIYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A       I   + G+       ++    +                   D SN    
Sbjct: 185 DKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNILFI 244

Query: 183 GGASVGILN 191
            G +   L+
Sbjct: 245 CGGAFVGLD 253


>gi|241896578|ref|ZP_04783874.1| ATP-dependent protease ATP-binding subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870170|gb|EER73921.1| ATP-dependent protease ATP-binding subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 415

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 61/305 (20%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +       SN  + G    G   +++  +K++          ++ +    +  D  + L+
Sbjct: 107 IEGVDLQKSNIAVIGPTGSGKTYIAQSMAKLLNVPFAIADATTLTEAG-YVGEDVENILL 165

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  + 
Sbjct: 166 KLIQAADYDVERAET-GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANV 224

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  I+T +ILFI  GAF                               
Sbjct: 225 PPQGGRKHPNQEFIQIDTTNILFIVGGAFAGIEQMVKERLGAKVIGFGTDAKTQQLQSSD 284

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR P+   L+ L +SD   ILT+ ++ L+ QY+ L+  
Sbjct: 285 KSIMQQVLPEDLMNFGLIPEFIGRLPILTALEELTESDLVRILTEPKNALVKQYQALLAL 344

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           E + L FT+D++ A+A +A+   +     GAR L++++E V+ D+ F     ++ T VVI
Sbjct: 345 EDVDLKFTDDALKAMAHLAIERET-----GARGLRSIIEEVMRDVMFDVPSREDVTGVVI 399

Query: 415 DAEYV 419
               V
Sbjct: 400 TEGAV 404



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 10/196 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
           +PREIV  L+ Y+IGQ DAK  +A+A+ N ++R              +L   NI ++GPT
Sbjct: 64  TPREIVDNLNEYVIGQDDAKHTLAVAVYNHYKRVNAKLTGETGIEGVDLQKSNIAVIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT I++ +A+L   PF   + T  TE GYVG +VE I+  L+  A   V  +     
Sbjct: 124 GSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVERAETGII 183

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A       I   + G+       ++    + +                 D +
Sbjct: 184 YIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQIDTT 243

Query: 178 NFDIPGGASVGILNLS 193
           N     G +   +   
Sbjct: 244 NILFIVGGAFAGIEQM 259


>gi|262374980|ref|ZP_06068214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           lwoffii SH145]
 gi|262309993|gb|EEY91122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter
           lwoffii SH145]
          Length = 436

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 122/304 (40%), Gaps = 73/304 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +              D++ + + 
Sbjct: 113 SNIMLVGPTGSGKTLLAQTLARLLDVPFAMADATTLTEA--------GYVGEDVENIVQK 164

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S   
Sbjct: 165 LLQKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPP 224

Query: 287 ---------KYGSINTDHILFIASGAFH-------------------VSRPAD------- 311
                    ++  I+T +ILFI  GAF                      R  D       
Sbjct: 225 QGGRKHPQQEFIQIDTSNILFICGGAFSGLEKIVQQRQEKGGIGFTAEVRKKDETKKLSD 284

Query: 312 --------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         L+PE  GR PV   L  L++     ILT+ ++ L  QY+ L   E 
Sbjct: 285 LFRQVEATDLVKFGLIPEFIGRLPVIATLDELDEEALMQILTEPKNALTRQYQHLFDMED 344

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L F E ++ A+A  AV  N+     GAR L++++E  L +  +      +  TVVI+ 
Sbjct: 345 VDLVFEESALRAVAKKAVERNT-----GARGLRSILENSLLETMYDLPSRSDVGTVVINE 399

Query: 417 EYVR 420
             ++
Sbjct: 400 AVIK 403



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 16/259 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
            P EI + LD+Y+IGQ  AK+ +++A+ N ++R ++      AD   EL   NI+LVGPT
Sbjct: 62  KPHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKVQNNGKKADDSVELSKSNIMLVGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LARL   PF   + T  TE GYVG +VE I++ L+  A   V ++++   
Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGII 181

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ +    +    I   + G+       ++    +            +      D S
Sbjct: 182 YIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTS 241

Query: 178 NF-DIPGGASVGILNLSELFS--KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           N   I GGA  G+  + +       +G   + + +   +K      + E+  L+    + 
Sbjct: 242 NILFICGGAFSGLEKIVQQRQEKGGIGFTAEVRKKDETKKLSDLFRQVEATDLVKFGLIP 301

Query: 235 RDSIQMVENYGIVFLDEFD 253
                +     I  LDE D
Sbjct: 302 E---FIGRLPVIATLDELD 317


>gi|86159771|ref|YP_466556.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197123825|ref|YP_002135776.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|220918590|ref|YP_002493894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85776282|gb|ABC83119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196173674|gb|ACG74647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. K]
 gi|219956444|gb|ACL66828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 412

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 133/324 (41%), Gaps = 60/324 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                  E  + + D     SN  + G    G   L++  +K++          ++ +  
Sbjct: 87  HNHYKRIESRVSIDDVELQKSNILLLGPTGSGKTLLAQTLAKILNVPFTIADATTLTEAG 146

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 147 -YVGEDVENIIVNLLQAADHDIERAQK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQA 204

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            ++  ++T +ILFI  GAF                   
Sbjct: 205 LLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFCGLEQIIERRSGGRSLGFG 264

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                           +  P DL     +PE  GR PV   L+ L++     ILT   + 
Sbjct: 265 TDVKSKTEKNVGELLAMVEPDDLLKFGMIPEFVGRLPVITSLEELDQPALVDILTRPRNA 324

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK+L++ +G+ L FT+ ++ A+A  A+   +     GAR L+ ++E  + DI +  
Sbjct: 325 LVKQYKKLLEMDGVNLKFTDGALVAIARAAMKNKA-----GARGLRAILENAMLDIMYDV 379

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFP 427
              +  + +VI  + V  H     
Sbjct: 380 PSRRNVREIVISEDVVDKHEAPLV 403



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 15/258 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y++GQ+ AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 61  PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA++   PF   + T  TE GYVG +VE II +L+  A + +  +++     DE+
Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAADHDIERAQKGIVYIDEI 180

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +          +      D +N   I
Sbjct: 181 DKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFI 240

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI--- 238
            GGA  G+  + E  S     G    ++   +K   EL+      +++ D + +  +   
Sbjct: 241 CGGAFCGLEQIIERRSGGRSLGFGTDVKSKTEKNVGELLA-----MVEPDDLLKFGMIPE 295

Query: 239 QMVENYGIVFLDEFDKIV 256
            +     I  L+E D+  
Sbjct: 296 FVGRLPVITSLEELDQPA 313


>gi|296170474|ref|ZP_06852062.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894945|gb|EFG74666.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE         V  T S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKGRDSRHEPVELTKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          V +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L++     IL
Sbjct: 267 RGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDRESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT+D+++A+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|172039351|ref|YP_001805852.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp.
           ATCC 51142]
 gi|226708146|sp|B1WUD2|CLPX_CYAA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|171700805|gb|ACB53786.1| ATP-dependent Clp protease, ATPase subunit [Cyanothece sp. ATCC
           51142]
          Length = 435

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 133/326 (40%), Gaps = 66/326 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + E +IE+  +     N  + G    G   L++  ++V+          
Sbjct: 104 HYKRLSLVQGKNDEDNIELQKS-----NILLMGPTGSGKTLLAQTLAQVLEVPFAVADAT 158

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +  V    ++  +  GI+++DE DKI  +     I   VS 
Sbjct: 159 TLTEAG-YVGEDVENILLRLLQVADLDVEEAQ-RGIIYIDEIDKIARKSENPSITRDVSG 216

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  +                I+T +ILFI  GAF             
Sbjct: 217 EGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLERVIEQRIGK 276

Query: 305 ----------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL     +PE  GR PV   L  L +     I
Sbjct: 277 KSMGFVRPGEGQSKEKRAADLMQRVEPDDLVKFGMIPEFVGRIPVMAALNPLTEETLVAI 336

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT   + L+ QY++L+  + + L+F+++++ A+A  A    +     GAR L+ ++E ++
Sbjct: 337 LTKPRNALVKQYQKLLNMDNVELEFSQEAVKAIAQEAYRRKT-----GARALRGIVEELM 391

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D+ +     ++ +  +I  E V   
Sbjct: 392 LDVMYELPSRKDVQKCMITKEMVEQR 417



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 12/233 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTG 63
            P EI   LD Y+IGQ +AK+ +++A+ N ++R  L     DE    L   NILL+GPTG
Sbjct: 75  KPMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKNDEDNIELQKSNILLMGPTG 134

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E++R    
Sbjct: 135 SGKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIY 194

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +                 D SN
Sbjct: 195 IDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSN 254

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA VG+  + E  +  K MG  R  + +   ++    + R E D L+
Sbjct: 255 ILFICGGAFVGLERVIEQRIGKKSMGFVRPGEGQSKEKRAADLMQRVEPDDLV 307


>gi|283852375|ref|ZP_06369645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
 gi|283572223|gb|EFC20213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio
           sp. FW1012B]
          Length = 417

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 60/306 (19%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D SN  + G    G   L++  ++++          ++ +    +  D  + L+ +    
Sbjct: 110 DKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILVQLLQNA 168

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              I+     GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +       
Sbjct: 169 DYDIEAASK-GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGR 227

Query: 287 -----KYGSINTDHILFIASGAF----------------------------------HVS 307
                ++  +NT +ILFI  GAF                                   ++
Sbjct: 228 KHPQQEFIRLNTANILFIVGGAFIGLEKIVGHRMRGTAMGFGAKVEARHDDDMSRMLSLA 287

Query: 308 RPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            PADL+     PE  GR P+   L+ L + D   ILT+ ++ L  QY++L + + + L F
Sbjct: 288 HPADLIKFGLIPEFIGRIPILTSLEELTREDLVRILTEPKNALTKQYQKLFELDKVRLRF 347

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           T+++++++A+ A+   +     GAR L+ VME ++ +I +    L   K  VI+   V  
Sbjct: 348 TKNAMESIAEKAIERKT-----GARGLRNVMESIMLEIMYKLPSLTGVKECVINKAVVEK 402

Query: 422 HIGDFP 427
            +    
Sbjct: 403 GLEPLL 408



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTG 63
             P EI   LD Y+IGQ+ AK+ +A+A+ N ++R            E+   NILL+GPTG
Sbjct: 62  LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAGADDVEIDKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + +
Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNADYDIEAASK 177


>gi|227544995|ref|ZP_03975044.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300909970|ref|ZP_07127430.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri SD2112]
 gi|130893166|gb|ABO32596.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri]
 gi|227185012|gb|EEI65083.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300892618|gb|EFK85978.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri SD2112]
          Length = 416

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 138/319 (43%), Gaps = 68/319 (21%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + ++ + 
Sbjct: 107 TELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENIILKLL 165

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 166 QAADFDVERAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 224

Query: 287 --------KYGSINTDHILFIASGAF---------------------------------- 304
                   ++  ++T +ILFI  GAF                                  
Sbjct: 225 GGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNIL 284

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P DL     +PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  
Sbjct: 285 QHVIPEDLLKFGLIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSK 344

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L FT+ ++ A+A +A+  N+     GAR L++++E V+ D+ F     ++ + V+ID   
Sbjct: 345 LTFTDGALRAMAQLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEKVIIDKRC 399

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H            ++L
Sbjct: 400 VTQHTEP--------RYVL 410



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVERAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D  N 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNI 242

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 243 LFIVGGAFDGIE 254


>gi|256375295|ref|YP_003098955.1| ATP-dependent protease ATP-binding subunit ClpX [Actinosynnema
           mirum DSM 43827]
 gi|255919598|gb|ACU35109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinosynnema
           mirum DSM 43827]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 60/311 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T ++LFI +GAF                                    S P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIQDRIGKRGLGFGAEVRTKAEVDAADYFAESMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR P+   + +L++     ILT+ ++ L+ QY++L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPMVASVTNLDQPSLVRILTEPKNALVKQYQKLFEMDGVELEFTK 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   VVI  + V+ ++
Sbjct: 353 SALEAVADQAILRGT-----GARGLRAIMEEVLLPVMYDIPSRTDVAKVVITEQTVKENV 407

Query: 424 GDFPSETDMYH 434
                      
Sbjct: 408 NPTIVSRQPSR 418



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 13/241 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   LD+Y+IGQ +AKR +++A+ N ++R Q     R+      EL   
Sbjct: 56  VKLDELPKPAEIHDFLDQYVIGQSEAKRTLSVAVYNHYKRIQAGDRGREGRDDGVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           + +       DEV + A  +    I   + G+       ++                   
Sbjct: 176 KRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQ 235

Query: 170 ADTSSDISN--FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D +N  F + G  +     + +   K       +    +             + L
Sbjct: 236 EFIQIDTTNVLFIVAGAFAGLEKIIQDRIGKRGLGFGAEVRTKAEVDAADYFAESMPEDL 295

Query: 228 I 228
           I
Sbjct: 296 I 296


>gi|229824054|ref|ZP_04450123.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271]
 gi|229786408|gb|EEP22522.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271]
          Length = 424

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 63/308 (20%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            E DIE+  +     N  + G    G   L++  +K++          S+ +    +  D
Sbjct: 105 HEADIELQKS-----NICLIGPTGSGKTFLAQSLAKLLNVPFAIADATSLTEAG-YVGED 158

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + L+ +       I+  + +GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 159 VENILLKLVQAADYDIEKAQ-HGIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILE 217

Query: 281 GSSVST-----------KYGSINTDHILFIASGAFHVSR--------------------- 308
           G+  +            ++  ++T  ILFI  GAF                         
Sbjct: 218 GTIANIPPKGGRKHPNQEFIQLDTSQILFIVGGAFDGIESIVKERLGSKVIGFGSSNGKL 277

Query: 309 ----------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE  GR PV   L+ L + D   ILT+ ++ L+ QY+ L
Sbjct: 278 DQSKSLMQQVTSEDLLKFGLIPEFIGRLPVMAMLEKLTQEDLVRILTEPKNALVKQYQRL 337

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKT 411
            + +G+ L+F E ++ A+A  A+  N+     GAR L++++E V+ DI F    D     
Sbjct: 338 FQIDGVELEFKEKALIAIAKQAIERNT-----GARGLRSILESVMLDIMFIVPSDENISR 392

Query: 412 VVIDAEYV 419
           +VI  + V
Sbjct: 393 IVITEDTV 400



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 8/193 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---ADLRDELMPKNILLVGPTG 63
             P EI++ L++Y+IGQ +AK+++A+A+ N ++R        +   EL   NI L+GPTG
Sbjct: 64  LKPAEIMAHLNQYVIGQTEAKKSLAVAVYNHYKRINASIATHEADIELQKSNICLIGPTG 123

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+L   PF   + T  TE GYVG +VE I+  LV  A   + +++     
Sbjct: 124 SGKTFLAQSLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLVQAADYDIEKAQHGIIY 183

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +                 D S 
Sbjct: 184 VDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIANIPPKGGRKHPNQEFIQLDTSQ 243

Query: 179 FDIPGGASVGILN 191
                G +   + 
Sbjct: 244 ILFIVGGAFDGIE 256


>gi|184155096|ref|YP_001843436.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           fermentum IFO 3956]
 gi|227514779|ref|ZP_03944828.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
           ATCC 14931]
 gi|260663639|ref|ZP_05864528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226440|dbj|BAG26956.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086888|gb|EEI22200.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum
           ATCC 14931]
 gi|260551865|gb|EEX24980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum 28-3-CHN]
          Length = 416

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 140/319 (43%), Gaps = 60/319 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  +  +  +  DT    SN  + G    G   L++  ++++          ++ +    
Sbjct: 94  KRVNAMVTGDNNDTELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + ++ +       I   E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENIILKLLQAADFDIDRAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF--------------------- 304
            ++EG+  +            ++  ++T +ILFI  GAF                     
Sbjct: 212 KILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFGTD 271

Query: 305 -------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                            P DL     +PE  GR PV   L+ L+++D   ILT+ ++ L+
Sbjct: 272 SKEINDVTEKNILQHVIPEDLLKFGLIPEFIGRLPVMTALEKLDEADLVRILTEPKNALV 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+EL++ +G  L FT  ++ A+A +A++ N+     GAR L++++E V+ DI F    
Sbjct: 332 KQYQELIRLDGAELHFTAGALQAMAKMAIDRNT-----GARGLRSIIEDVMRDIMFDLPS 386

Query: 407 LQE-KTVVIDAEYVRLHIG 424
            Q+   VVI+ E V  H  
Sbjct: 387 RQDVVKVVINKECVTKHTA 405



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           +P+EI+++LD Y+IGQQDAK+ +A+A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPQEILNQLDDYVIGQQDAKKTLAVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   +  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDIDRAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D  N 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNI 242

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 243 LFIVGGAFDGIE 254


>gi|323451888|gb|EGB07764.1| hypothetical protein AURANDRAFT_27171 [Aureococcus anophagefferens]
          Length = 372

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 160/406 (39%), Gaps = 64/406 (15%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLV 59
            F+  PR++   LDRY++ Q DAK+ +++A+ + +    R     ++   E    NILL+
Sbjct: 27  RFDLRPRQVREHLDRYVVRQDDAKKVLSVAICDHYNVVRRCLSDASERAAEYSKPNILLL 86

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GP+G GKT I R LA+L G PF+K + TKFTE G VG + E ++R+LV+ A   V  ++ 
Sbjct: 87  GPSGSGKTYIMRTLAKLLGVPFVKADATKFTETGIVGEDAEDLVRNLVEQADGDVELAQY 146

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
                   I  +E  +D L              ++            +         +  
Sbjct: 147 ------GIIYVDE--VDKLCR-----------GEQGGTSTTGAGGATVGGGARGVQSTFL 187

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            +     + +   S +  ++   G+  +                         V    + 
Sbjct: 188 KVMEETEISVNKQSGMIPEIFLGGKPAQ----------------------PARVSTKHVL 225

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
            + +     LDE  K   +     +G   E    D     +   V   +    T    F+
Sbjct: 226 FIFSGAFTGLDERLK--RKHEQRSMGFGLEAAGGDDGLTDD--GVPKSFLKKATSS-DFV 280

Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            +G         L  E  GR PVRV +  L   D  LIL  +E +++ QY+      G+ 
Sbjct: 281 DAG---------LETEFIGRIPVRVAVDPLGARDLELILLQSEGSVLRQYERDFAGYGVD 331

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           L+ T D+I A+A  A    +     GAR L TV+ER   D  +   
Sbjct: 332 LEVTRDAIAAVAAEAAEEKT-----GARGLVTVLERTFRDFKYELP 372


>gi|307721395|ref|YP_003892535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979488|gb|ADN09523.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas
           autotrophica DSM 16294]
          Length = 414

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 57/294 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++V+          S+ +    +  D  + L  +      
Sbjct: 112 SNILLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAG-YVGEDVENILTKLIQAADG 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GI+FLDE DK+        I   VS EGVQ+ LL ++EGSSV+         
Sbjct: 171 DVERAQK-GIIFLDEVDKVSRMSENRSITRDVSGEGVQQALLKIIEGSSVNIPPKGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFH--------------------------------VSRPAD 311
              ++ +I+T +ILFI  GAF                                 +  P D
Sbjct: 230 PNQEFTAIDTTNILFICGGAFDGLEEILKRKQGENVLGFGHDKKTKDEKKPTFDMVEPDD 289

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR P+   L  + + D   ILT+ +++L+ QYK+L   + + L+F ED+
Sbjct: 290 LVHYGLIPELVGRLPIIASLNEITEDDMVRILTEPKNSLVKQYKKLFAIDEVELNFEEDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           + A+A  A+   +     GAR L+ ++E  + DI +   +     V+I  E + 
Sbjct: 350 LRAIAQKAIKRKT-----GARGLRAILEESMIDIMYELPEYSGYEVMITKEVIE 398



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 8/231 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTG 63
            +P+E+ + L  YIIGQ+ A++ +++A+ N ++R       AD   E+   NILL+GPTG
Sbjct: 62  MTPKELDAFLGEYIIGQERARKLLSVAVYNHYKRIFKMHNAADDDTEIAKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A   V  +++    
Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAADGDVERAQKGIIF 181

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + + ++    I   + G+       ++      +              T+ D +N
Sbjct: 182 LDEVDKVSRMSENRSITRDVSGEGVQQALLKIIEGSSVNIPPKGGRKHPNQEFTAIDTTN 241

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                G +   L       +          + +  +  P     E D L+ 
Sbjct: 242 ILFICGGAFDGLEEILKRKQGENVLGFGHDKKTKDEKKPTFDMVEPDDLVH 292


>gi|41408376|ref|NP_961212.1| ATP-dependent protease ATP-binding subunit [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|118466554|ref|YP_880943.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           avium 104]
 gi|254774532|ref|ZP_05216048.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|61211562|sp|Q73XN1|CLPX_MYCPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214785|sp|A0QDF5|CLPX_MYCA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41396732|gb|AAS04595.1| ClpX [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167841|gb|ABK68738.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           avium 104]
          Length = 426

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE         V  T S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKGRDSRHEPVELTKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          V +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L++     IL
Sbjct: 267 RGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDRESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT+D+++A+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYTRLFEMDGVELEFTDDALEAIADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|147677140|ref|YP_001211355.1| ATP-dependent protease ATP-binding subunit ClpX [Pelotomaculum
           thermopropionicum SI]
 gi|146273237|dbj|BAF58986.1| ATP-dependent protease Clp, ATPase subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 427

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 109 KIDDVELQKSNIVMLGPTGSGKTLLAQTLARLLNVPFAIADATSLTEAG-YVGEDVENIL 167

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 168 LKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 226

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       ++  ++T +ILFI  GAF                              
Sbjct: 227 VPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIMNRIGKKAMGFGAEIKARKELKI 286

Query: 309 --------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR P+ V L +L++     ILT+  + L+ QY++L + 
Sbjct: 287 GEILSKILPEDLLKYGLIPEFVGRLPIIVTLDALDEEALIRILTEPRNALVKQYEKLFEL 346

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVI 414
           +G+ L+FT+D++ A+A+ A+  N+     GAR L+ ++E V+ D+ +      +    ++
Sbjct: 347 DGVTLEFTQDALKAVAEEALKRNT-----GARGLRAILEEVMLDVMYDIPSRSDVAKCIV 401

Query: 415 DAEYVRLH 422
             E +   
Sbjct: 402 TRETILRR 409



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 15/256 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ+ AK+++A+A+ N ++R  L   + D EL   NI+++GPTG GK
Sbjct: 71  KPKEIKEILDQYVIGQESAKKSLAVAVYNHYKRINLGGKIDDVELQKSNIVMLGPTGSGK 130

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 131 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIVYIDE 190

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 191 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILF 250

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPEL-MRDESDRLIDMDTVHRDSI- 238
             G +   +        +M    KK +    + K   EL + +   +++  D +    I 
Sbjct: 251 ICGGAFDGIEKI-----IMNRIGKKAMGFGAEIKARKELKIGEILSKILPEDLLKYGLIP 305

Query: 239 -QMVENYGIVFLDEFD 253
             +     IV LD  D
Sbjct: 306 EFVGRLPIIVTLDALD 321


>gi|329962625|ref|ZP_08300573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           fluxus YIT 12057]
 gi|328529656|gb|EGF56554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           fluxus YIT 12057]
          Length = 414

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 136/326 (41%), Gaps = 66/326 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   E  D  ++IE        SN  + G    G   L+   +K++          
Sbjct: 95  HYKRLLQKEGGDD-VEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   VS 
Sbjct: 147 VLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF             
Sbjct: 205 EGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNT 264

Query: 305 HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           HV                          +   L+PEI GR PV  +L  L+++  R ILT
Sbjct: 265 HVVGYSAARNTAVIDKNNLMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRAILT 324

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++++I QY +L + + + LDF +   + + D A+        +GAR L++++E ++ D
Sbjct: 325 EPKNSIIKQYVKLFEMDNVKLDFEDAVFEYIVDKAIEYK-----LGARGLRSIVETIMMD 379

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGD 425
             F      + + V+  +Y R  +  
Sbjct: 380 AMFEIPSEHKDSFVVTLDYARRQLEK 405



 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q       E+   NI++V
Sbjct: 59  LNLKELPKPVEIKGFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKEGGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|28378738|ref|NP_785630.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           WCFS1]
 gi|254556941|ref|YP_003063358.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|300768256|ref|ZP_07078161.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180930|ref|YP_003925058.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|38257506|sp|Q88VE2|CLPX_LACPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28271575|emb|CAD64480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           plantarum WCFS1]
 gi|254045868|gb|ACT62661.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           JDM1]
 gi|300494320|gb|EFK29483.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308046421|gb|ADN98964.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 421

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 142/351 (40%), Gaps = 67/351 (19%)

Query: 132 ERILDALV----GKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           + I+D L     G+     T  V      +  +      +          SN  + G   
Sbjct: 65  KEIVDELDQYVIGQNEAKRTLSVAVYNHYKRVKAMADNDEETEDGPELQKSNISLVGPTG 124

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G   L++  ++++          ++ +    +  D  + L+ +       ++  E  GI
Sbjct: 125 SGKTFLAQSLARILDVPFAIADATTLTEAG-YVGEDVENILLKLLQNADYDVERAEK-GI 182

Query: 247 VFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINT 293
           +++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I+T
Sbjct: 183 IYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDT 242

Query: 294 DHILFIASGAF------------------------------------HVSRPADL----- 312
            +ILFI  GAF                                        P DL     
Sbjct: 243 TNILFIVGGAFDGIEDIVKRRLGDKTIGFGTDTDGKNAVLDDSKSLMQQVVPEDLLQFGL 302

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L+ L + D   ILT+ ++ L+ QY+ L+  +G  LDF +D++ A+A 
Sbjct: 303 IPEFIGRLPILTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAIAQ 362

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            A+  N+     GAR L++++E  + DI +     ++ K V+I  E V  H
Sbjct: 363 EALARNT-----GARGLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADH 408



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 14/235 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------LMPKN 55
           +LT   +P+EIV ELD+Y+IGQ +AKR +++A+ N ++R +  AD  +E      L   N
Sbjct: 57  ELTDIPTPKEIVDELDQYVIGQNEAKRTLSVAVYNHYKRVKAMADNDEETEDGPELQKSN 116

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           I LVGPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V 
Sbjct: 117 ISLVGPTGSGKTFLAQSLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVE 176

Query: 116 ESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            + +     DE+ + A  +    I   + G+       ++    + +          +  
Sbjct: 177 RAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQE 236

Query: 171 DTSSDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
               D +N   I GGA  GI ++    L  K +G G     + +V      LM+ 
Sbjct: 237 FIQIDTTNILFIVGGAFDGIEDIVKRRLGDKTIGFGTDTDGKNAVLDDSKSLMQQ 291


>gi|84494296|ref|ZP_00993415.1| ClpX [Janibacter sp. HTCC2649]
 gi|84383789|gb|EAP99669.1| ClpX [Janibacter sp. HTCC2649]
          Length = 424

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 58/298 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLIGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------HVSRPAD 311
              ++  I+T ++LFI  GAF                                H   P D
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKLIESRSGKKGLGFGSELHNPKDLAESIHEVMPED 293

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   +  L+      ILT+  + L+ QY+++ + +G+ L+FT+++
Sbjct: 294 LMKFGLIPEFIGRLPVITTVSPLDIPALTEILTEPRNALVKQYQKMFRIDGVELEFTDEA 353

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           + A+A+ A    +     GAR L+ +ME VL  + F    D +   VV+  E VR ++
Sbjct: 354 VVAIAEQAQARGT-----GARGLRAIMEEVLLPVMFDVPSDDEITKVVVTDEVVRKNV 406



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 12/199 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL------RDELMPKNILLVGP 61
            P+EI   L +YIIGQ  AKR++A+A+ N ++R Q    +        ++   NILL+GP
Sbjct: 64  KPKEIFDFLQQYIIGQDVAKRSLAVAVYNHYKRIQSGEGVGKKDADHVDIAKSNILLIGP 123

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR--- 118
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 183

Query: 119 --RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A  +    I   + G+       ++                        D 
Sbjct: 184 IYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDT 243

Query: 177 SN-FDIPGGASVGILNLSE 194
           +N   I GGA  G+  L E
Sbjct: 244 TNVLFIVGGAFAGLEKLIE 262


>gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas
           campestris pv. campestris str. B100]
 gi|23813857|sp|Q8PBY5|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81304479|sp|Q4URL5|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229485950|sp|B0RTF5|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas
           campestris pv. campestris]
          Length = 428

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 148/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L         A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  ++E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRSKNDEVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L + E + L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   + EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      ++      +  +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQARSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLI 298


>gi|256752436|ref|ZP_05493295.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748705|gb|EEU61750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 424

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 60/309 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+  D     SN  + G    G   L++  +K++          S+ +    +  D  + 
Sbjct: 99  IKPDDVELQKSNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENI 157

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 158 LLKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA 216

Query: 285 ST-----------KYGSINTDHILFIASGAF---------HVSRPA-------------- 310
           +            ++  I+T +ILFI  GAF          + + +              
Sbjct: 217 NVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKD 276

Query: 311 ----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L +
Sbjct: 277 LSEILSHIMPQDLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVV 413
            +G+ L+F + ++  +AD+A+   +     GAR L+ ++E ++ D+ +        +  +
Sbjct: 337 LDGVKLEFDKKALGLIADMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCI 391

Query: 414 IDAEYVRLH 422
           I  E V   
Sbjct: 392 ITEETVLKK 400



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGIGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSE 194
           D +N   I GGA  GI  + E
Sbjct: 235 DTTNILFICGGAFEGIEKIIE 255


>gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166710929|ref|ZP_02242136.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|81311961|sp|Q5H433|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123522986|sp|Q2P6Y9|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 428

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 148/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L         A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  D+E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRSKNDDVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGAKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L   EG+ L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 181 IPGGASVGILNLSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  + +  S     +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLI 298


>gi|188578370|ref|YP_001915299.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|238689531|sp|B2SMI2|CLPX_XANOP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|188522822|gb|ACD60767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 428

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 148/386 (38%), Gaps = 89/386 (23%)

Query: 108 DVAINIVRESRRDEVREQASIN-----AEERILDALVG-----KTATSNTREVFRKKLRD 157
           D  + +  +  R+E+ E+A            IL+ L         A            + 
Sbjct: 41  DECVELCNDIIREELEEKAQSARSSLPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKR 100

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   K  D+E+A +     N  + G    G   L+E  ++++          ++ +   
Sbjct: 101 IESRSKNDDVELAKS-----NILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEA-- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +        GIV++DE DKI  +     I   VS E
Sbjct: 154 ------GYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 208 GVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDA 267

Query: 306 -----------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P DL+     PE  GR PV   L+ L++     I
Sbjct: 268 GGIGFGVKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKI 327

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ +  Q+K+L   EG+ L+F  D++ A+A  A+   +     GAR L+T++E VL
Sbjct: 328 LTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKT-----GARGLRTIVESVL 382

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLH 422
            D  +     +    VV+D   +   
Sbjct: 383 LDTMYELPSQENVSKVVVDESVIEHK 408



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI+  LD+Y+IGQ  AKR +A+A+ N ++R +  +   D EL   NILLVGPTG GK
Sbjct: 68  KPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D  N   
Sbjct: 188 IDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILF 247

Query: 181 IPGGASVGILNLSELFSK---VMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  + +  S     +G G K K     Q+    L   E + LI
Sbjct: 248 ICGGAFAGLDKVIQQRSNDAGGIGFGVKVKSSERKQEVGKILAEVEPEDLI 298


>gi|167040914|ref|YP_001663899.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
           sp. X514]
 gi|300914950|ref|ZP_07132266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X561]
 gi|307723816|ref|YP_003903567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X513]
 gi|238687634|sp|B0K532|CLPX_THEPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166855154|gb|ABY93563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X514]
 gi|300889885|gb|EFK85031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X561]
 gi|307580877|gb|ADN54276.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter sp. X513]
          Length = 424

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 60/309 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+  D     SN  + G    G   L++  +K++          S+ +    +  D  + 
Sbjct: 99  IKPDDVELQKSNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENI 157

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 158 LLKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA 216

Query: 285 ST-----------KYGSINTDHILFIASGAF---------HVSRPA-------------- 310
           +            ++  I+T +ILFI  GAF          + + +              
Sbjct: 217 NVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKD 276

Query: 311 ----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L +
Sbjct: 277 LSEILSHIMPQDLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVV 413
            +G+ L+F + ++  +AD+A+   +     GAR L+ ++E ++ D+ +        +  +
Sbjct: 337 LDGVKLEFDKKALGLIADMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCI 391

Query: 414 IDAEYVRLH 422
           I  E V   
Sbjct: 392 ITEETVLKK 400



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGIGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSE 194
           D +N   I GGA  GI  + E
Sbjct: 235 DTTNILFICGGAFEGIEKIIE 255


>gi|167038049|ref|YP_001665627.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116458|ref|YP_004186617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326391009|ref|ZP_08212558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus JW 200]
 gi|238687678|sp|B0KBA3|CLPX_THEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166856883|gb|ABY95291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929549|gb|ADV80234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325992954|gb|EGD51397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 424

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 60/309 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+  D     SN  + G    G   L++  +K++          S+ +    +  D  + 
Sbjct: 99  IKPDDVELQKSNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENI 157

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 158 LLKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA 216

Query: 285 ST-----------KYGSINTDHILFIASGAF---------HVSRPA-------------- 310
           +            ++  I+T +ILFI  GAF          + + +              
Sbjct: 217 NVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKD 276

Query: 311 ----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L +
Sbjct: 277 LSEILSHIMPQDLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVV 413
            +G+ L+F + ++  +AD+A+   +     GAR L+ ++E ++ D+ +        +  +
Sbjct: 337 LDGVKLEFDKKALGLIADMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCI 391

Query: 414 IDAEYVRLH 422
           I  E V   
Sbjct: 392 ITEETVLKK 400



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGIGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSE 194
           D +N   I GGA  GI  + E
Sbjct: 235 DTTNILFICGGAFEGIEKIIE 255


>gi|94498300|ref|ZP_01304860.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58]
 gi|94422302|gb|EAT07343.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58]
          Length = 294

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 60/279 (21%)

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
           +  +K            ++ +    +  D  + ++ +      +++  +  GIV++DE D
Sbjct: 2   QTLAKTFDVPFTMADATTLTEAG-YVGEDVENIILKLLQASDYNVEKAQ-RGIVYIDEID 59

Query: 254 KIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIA 300
           KI  +     I   VS EGVQ+ LL L+EG++ S            ++  ++T +ILFI 
Sbjct: 60  KISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFIC 119

Query: 301 SGAF--------------------HVSRPAD-------------------LLPEIQGRFP 321
            GAF                    HV+ P +                   L+PE  GR P
Sbjct: 120 GGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGLIPEFVGRLP 179

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           V   L+ L+ S    IL + ++ L+ QY +L   E + L FT+D++ A+A  A+   +  
Sbjct: 180 VIATLEDLDVSALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAKKAIERKT-- 237

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              GAR L++++E +L D  F    ++    VV+D + V
Sbjct: 238 ---GARGLRSILEGILLDTMFDLPSMEGVGEVVVDKDVV 273



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR----EQ 125
           ++ LA+    PF   + T  TE GYVG +VE II  L+  +   V +++R  V     ++
Sbjct: 1   AQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQRGIVYIDEIDK 60

Query: 126 ASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            S  AE   I   + G+       ++                 +      D +N     G
Sbjct: 61  ISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICG 120

Query: 185 ASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +   L   + +                  +K    L + E + L+
Sbjct: 121 GAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLL 166


>gi|71982905|ref|NP_001021076.1| hypothetical protein D2030.2 [Caenorhabditis elegans]
 gi|3875395|emb|CAA98115.1| C. elegans protein D2030.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 586

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 184/502 (36%), Gaps = 130/502 (25%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD++++GQ+ AK+ +A+ +   +RR +         +      +  T    ++
Sbjct: 130 PTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHN-------IETGASSIYQTHAQTSS 182

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
             + L+     P  K+    F +              L  +A + +R S   +       
Sbjct: 183 SGKSLSNDGMDP--KMPRGVFYQD----------ELRLGQMASSELRNSIMQQQSNN--- 227

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                         +  N    FR      +    E            SN  + G + VG
Sbjct: 228 -------QPPSPAQSPRNAAPTFRALPEKEQSVRLEK-----------SNVLLVGPSGVG 269

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV------E 242
              L++  ++V+         + +  C    M        D+++V +  +Q         
Sbjct: 270 KTFLTQTLARVLD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKA 321

Query: 243 NYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G          
Sbjct: 322 QQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQ 381

Query: 290 -SINTDHILFIASGAFH-----VSRPAD-------------------------------- 311
             I+T  ILFIASGAF      V R  D                                
Sbjct: 382 VQIDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELL 441

Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + 
Sbjct: 442 SKADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVD 501

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F+ ++++ +A +A++  +     GAR L++++E  L +  F+      ++V +  E +
Sbjct: 502 LSFSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFTVPGSDIESVHVSREAI 556

Query: 420 --------RLHIGDFPSETDMY 433
                            E D+ 
Sbjct: 557 LGEKEVEYSRRKSQVVEEEDVS 578


>gi|148543885|ref|YP_001271255.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           reuteri DSM 20016]
 gi|184153285|ref|YP_001841626.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           reuteri JCM 1112]
 gi|194468440|ref|ZP_03074426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           reuteri 100-23]
 gi|227364793|ref|ZP_03848841.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           MM2-3]
 gi|325682582|ref|ZP_08162099.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri MM4-1A]
 gi|167009017|sp|A5VJ94|CLPX_LACRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148530919|gb|ABQ82918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri DSM 20016]
 gi|183224629|dbj|BAG25146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           reuteri JCM 1112]
 gi|194453293|gb|EDX42191.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           reuteri 100-23]
 gi|227070137|gb|EEI08512.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri
           MM2-3]
 gi|324978421|gb|EGC15371.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 416

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 138/319 (43%), Gaps = 68/319 (21%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + ++ + 
Sbjct: 107 TELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENIILKLL 165

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 166 QAADFDVERAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 224

Query: 287 --------KYGSINTDHILFIASGAF---------------------------------- 304
                   ++  ++T +ILFI  GAF                                  
Sbjct: 225 GGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNIL 284

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P DL     +PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  
Sbjct: 285 QHVIPEDLLKFGLIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSQ 344

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L FT+ ++ A+A +A+  N+     GAR L++++E V+ D+ F     ++ + V+ID   
Sbjct: 345 LTFTDGALRAMAQLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEKVIIDKRC 399

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V  H            ++L
Sbjct: 400 VTQHTEP--------RYVL 410



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVERAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D  N 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNI 242

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 243 LFIVGGAFDGIE 254


>gi|330469648|ref|YP_004407391.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
 gi|328812619|gb|AEB46791.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
          Length = 431

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 130/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 175 DIKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDIFGQVMP 293

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV   ++SL++S    ILT+  + L+ QY+ L + +G+ L+F  
Sbjct: 294 EDMLKFGLIPEFIGRLPVITSVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   V+I  E V  ++
Sbjct: 354 PALEAIADQAMLRGT-----GARGLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            P EI   LD Y++GQ+ AK+A+A+A+ N ++R Q  A       +   EL   NILL+G
Sbjct: 63  KPMEICQFLDTYVVGQEQAKKALAVAVYNHYKRIQAEAANAPGAGNDGVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +   
Sbjct: 123 PTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKRAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++    + +                 D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFICGGAFAGLD 258


>gi|308459430|ref|XP_003092035.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
 gi|308254453|gb|EFO98405.1| hypothetical protein CRE_23158 [Caenorhabditis remanei]
          Length = 638

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 185/487 (37%), Gaps = 100/487 (20%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P +I   LD++++GQ+ AK+ +A+ +   +RR +   +  +        L  K   L G 
Sbjct: 141 PTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHNIESAENMSFMLENLFKKLEFLTGA 200

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           T + +T   +     +       + +     G   ++       L  +A   +R S   +
Sbjct: 201 TSIYQTTPHKEGGGASMMGGGASDSSSKMPRGVFYQD----EMRLGQMATGELRNSLMQQ 256

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
              Q       +       +              R     +  + +E        SN  +
Sbjct: 257 QNNQPPSTHHHQQHLHQQQQQTARLGSSSSPPSFRSLPEKEPTVRLEK-------SNILL 309

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            G + VG   L++  ++V+         + +  C    M        D+++V +  +Q  
Sbjct: 310 VGPSGVGKTFLTQTLARVLD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQAA 361

Query: 242 ------ENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG--- 289
                    GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G   
Sbjct: 362 GGNVEKAQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKG 421

Query: 290 --------SINTDHILFIASGAFH-----VSRPAD------------------------- 311
                    I+T  ILFIASGAF      V R  D                         
Sbjct: 422 MGSQQDQVQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVM 481

Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K  
Sbjct: 482 RKRDELLGKADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQ 541

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
              + + L F+ ++++ +A +A+   +     GAR L++++E  L +  F+      ++V
Sbjct: 542 FGIDNVDLSFSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFTVPGSDIESV 596

Query: 413 VIDAEYV 419
            +  E +
Sbjct: 597 HVSREAI 603


>gi|299822630|ref|ZP_07054516.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM
           20601]
 gi|299816159|gb|EFI83397.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM
           20601]
          Length = 421

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 63/308 (20%)

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E ++E++ +     N  + G    G   L++  ++++          S+ +    +  D 
Sbjct: 105 EDEVELSKS-----NICLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDV 158

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG
Sbjct: 159 ENILLKLIQAADFDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEG 217

Query: 282 SSVST-----------KYGSINTDHILFIASGAF-------------------------- 304
           +  S            ++  I+T +ILFI  GAF                          
Sbjct: 218 TVASVPPQGGRKHPQQEFIQIDTSNILFIVGGAFDGIEQIVKNRMGEKVIGFGSDNQRLK 277

Query: 305 ------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DL     +PE  GR PV   L+ L++     ILT+ ++ L+ QY +++
Sbjct: 278 EDETYLSKVVPEDLLRFGLIPEFIGRLPVIATLEQLDEEALVSILTEPKNALVKQYVKML 337

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + + + L+F  +++ A+A  A+   +     GAR L++++E+++ ++ F      + K  
Sbjct: 338 ELDDVTLEFEPEALKAIAKEAIARKT-----GARGLRSIIEKLMLEVMFEIPSRDDIKKC 392

Query: 413 VIDAEYVR 420
           VI  E V 
Sbjct: 393 VITKEAVE 400



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
            P+EI + L  Y+IGQ+ AK+A+++A+ N ++R     ++   EL   NI L+GPTG GK
Sbjct: 66  KPQEIRNILSEYVIGQERAKKALSVAVYNHYKRVNGLGSEDEVELSKSNICLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 126 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFDVEKAEKGIIYIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +            +      D SN   
Sbjct: 186 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQIDTSNILF 245

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 246 IVGGAFDGIEQI 257


>gi|255690573|ref|ZP_05414248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           finegoldii DSM 17565]
 gi|260624035|gb|EEX46906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           finegoldii DSM 17565]
          Length = 414

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQKTATVDRNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEKSVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +KT  +  EY +  +  
Sbjct: 378 MDVMFEIPSENKKTYEVTLEYAKSQLEK 405



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|227529061|ref|ZP_03959110.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351073|gb|EEJ41364.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis
           ATCC 49540]
          Length = 417

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 68/318 (21%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + ++ + 
Sbjct: 107 TELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENIILKLL 165

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 166 QAANFDVEAAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 224

Query: 287 --------KYGSINTDHILFIASGAF---------------------------------- 304
                   ++  ++T +ILFI  GAF                                  
Sbjct: 225 GGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKERLGDKTIGFGTNSDEAANVTEKNIL 284

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P DL     +PE  GR PV   L+ L++ D   ILT+ ++ L+ QY+EL++ +G  
Sbjct: 285 QHVIPEDLLKFGLIPEFIGRLPVMTALQKLDEDDLVRILTEPKNALVKQYQELIRLDGSQ 344

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L FT+ ++ A+A +A+  N+     GAR L++++E V+ D+ F     ++ + V+ID   
Sbjct: 345 LTFTDGALRAMAQLAIKRNT-----GARGLRSIIEGVMRDVMFDLPSRKDVEKVIIDKRC 399

Query: 419 VRLHIGDFPSETDMYHFI 436
           V  H            +I
Sbjct: 400 VTQHTEP--------RYI 409



 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           +P EI+S+LD Y+IGQ DAK+ +++A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPEEIMSKLDDYVIGQSDAKKTLSVAVYNHYKRVNAMTTGDNNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAANFDVEAAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D  N 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNI 242

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 243 LFIVGGAFDGIE 254


>gi|302869358|ref|YP_003837995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315504167|ref|YP_004083054.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Micromonospora sp. L5]
 gi|302572217|gb|ADL48419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410786|gb|ADU08903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora sp. L5]
          Length = 430

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 175 DIKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGSGGTGFGARLRSVSERSTDDIFSQVMP 293

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F +
Sbjct: 294 EDMLKFGLIPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQ 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   V+I  E V  ++
Sbjct: 354 PALEAIADQAMLRGT-----GARGLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-------LRDELMPKNILLVG 60
            P EI   LD Y++GQ+ AK+A+A+A+ N ++R Q  A           EL   NILL+G
Sbjct: 63  KPMEICQFLDNYVVGQEQAKKALAVAVYNHYKRIQAEAAGAPGSGTDGVELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +   
Sbjct: 123 PTGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKRAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV + A  +    I   + G+       ++    + +                 D
Sbjct: 183 IIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQID 242

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   L+
Sbjct: 243 TTNVLFICGGAFAGLD 258


>gi|53715361|ref|YP_101353.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis YCH46]
 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis NCTC 9343]
 gi|253567250|ref|ZP_04844700.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5]
 gi|265767848|ref|ZP_06095380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_16]
 gi|61211441|sp|Q64NW3|CLPX_BACFR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81313618|sp|Q5L8L7|CLPX_BACFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52218226|dbj|BAD50819.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           fragilis YCH46]
 gi|60494764|emb|CAH09570.1| putative ATP-dependent CLP protease ATP-binding subunit
           [Bacteroides fragilis NCTC 9343]
 gi|251944081|gb|EES84600.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5]
 gi|263252520|gb|EEZ24048.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_16]
 gi|301164819|emb|CBW24379.1| putative ATP-dependent CLP protease ATP-binding subunit
           [Bacteroides fragilis 638R]
          Length = 415

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 95  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 145

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 146 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 203

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 204 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 263

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 264 NTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAI 323

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L F  +  + + D AV        +GAR L++++E ++
Sbjct: 324 LTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYK-----LGARGLRSIVETIM 378

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y +  +  
Sbjct: 379 MDVMFEIPSEDQKEYEVTLDYAKHQLEK 406



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+Y+IGQ DAKR +A+++ N ++R  Q  +    E+   NI++V
Sbjct: 60  LNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 120 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 240 NTKNILFICGGAFDGIE 256


>gi|242310371|ref|ZP_04809526.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
 gi|239522769|gb|EEQ62635.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           pullorum MIT 98-5489]
          Length = 413

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 57/312 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           + +  DT    SN  + G    G   +++  +K +          S+ +    +  D  +
Sbjct: 98  NPQEEDTEISKSNILLIGPTGSGKTLMAQTLAKSLNIPIAICDATSLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +      ++Q  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 157 ILTRLLQEANGNVQRAEK-GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSV 215

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  INT  ILFI  GAF                            
Sbjct: 216 VNIPPKGGRKHPNQDFIQINTKDILFICGGAFDGLEEIIERRIGGNTLGFHHQKNTKVNS 275

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE+ GR  +   L+ + K     IL   ++ L  QYK+L   
Sbjct: 276 HNLLEKVEPDDLVSFGLIPELIGRLHMIATLEKITKEAMVNILQKPKNALTKQYKQLFAL 335

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G++L F  ++++A+A++A+   +     GAR L+++ME ++ DI +   +L+   V+I 
Sbjct: 336 DGVVLTFQPEALEAIAELAIQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEVIIT 390

Query: 416 AEYVRLHIGDFP 427
            E V        
Sbjct: 391 KETVSKKEKPLL 402



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65
             P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R  Q P +   E+   NILL+GPTG G
Sbjct: 61  MPPKELKAILDEYVIGQEKAKKVFSVAVYNHYKRILQNPQEEDTEISKSNILLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV--- 122
           KT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ + +  V   
Sbjct: 121 KTLMAQTLAKSLNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGNVQRAEKGIVFID 180

Query: 123 -REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  +E R I   + G+       ++    + +                 +  +  
Sbjct: 181 EIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQINTKDIL 240

Query: 180 DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            I GGA  G+  + E  +    +G   +K  +++    +  L + E D L+
Sbjct: 241 FICGGAFDGLEEIIERRIGGNTLGFHHQKNTKVN---SHNLLEKVEPDDLV 288


>gi|313906307|ref|ZP_07839650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
 gi|313468863|gb|EFR64222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium
           cellulosolvens 6]
          Length = 432

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 110 SNILMLGPTGSGKTLLAQTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +         
Sbjct: 169 DVERAE-HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 228 PHQEFIQVDTSNILFICGGAFEGLERIIESRKDTKSLGFEADLGIHKNTDIGEVLREVMP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L  L++     IL + +++L+ QY++L + +G+ L F +
Sbjct: 288 EDLVKFGLIPEFVGRVPVVVTLDGLDEDALVSILKEPKNSLVKQYQKLFEIDGVELKFED 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           D++ A+A  AV   +     GAR L+ +ME  + D+ +    D       I  + V 
Sbjct: 348 DALRAMAAEAVRRKT-----GARGLRAIMESTMMDVMYETPSDDTIIECDITKDAVD 399



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 6/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ+ AKR +A+A+ N ++R         EL   NIL++GPTG GK
Sbjct: 63  LKPVEIKKFLDEYVIGQEAAKRVLAVAVYNHYKRILSATSSDVELQKSNILMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  +       DE
Sbjct: 123 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVERAEHGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    + +                 D SN   
Sbjct: 183 IDKITRKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFIQVDTSNILF 242

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 243 ICGGAFEGLERIIE 256


>gi|303239033|ref|ZP_07325563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio
           cellulolyticus CD2]
 gi|302593371|gb|EFL63089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio
           cellulolyticus CD2]
          Length = 431

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 136/307 (44%), Gaps = 60/307 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DI+ +D     SN  + G    G   L++  ++++          S+ +    +  D  +
Sbjct: 99  DIKGSDVELQKSNIIMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 158 ILLKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------HVSRPA------------- 310
            S            ++  I+T +ILFI  GAF          + + +             
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSMGFGAKIESQKTI 276

Query: 311 -----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR PV V L+SL+K+    ILT+ ++ L+ QY++L 
Sbjct: 277 DMGEILKHIYPQDLLKFGLIPEFVGRLPVMVSLQSLDKAALIQILTEPKNALVKQYQKLF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTV 412
           + + + L+F   +++A+A+ ++  N+     GAR L+ ++E ++ ++ +    +   +  
Sbjct: 337 EMDEVELEFETGALEAIAEKSIERNT-----GARGLRAIIEEIMLEVMYDIPTMGNVEKC 391

Query: 413 VIDAEYV 419
            +  + V
Sbjct: 392 TVTRDTV 398



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 11/263 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L     P EI   LD+Y+IGQ+ AK+++++A+ N ++R        D EL   NI+++G
Sbjct: 57  ELNDVPKPAEIKEILDQYVIGQESAKKSLSVAVYNHYKRINTDIKGSDVELQKSNIIMLG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 117 PTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEKG 176

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    +                   D
Sbjct: 177 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236

Query: 176 ISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +N     G +   ++  +     K       K            L       L+    +
Sbjct: 237 TTNILFICGGAFDGIDKIIQNRIGKKSMGFGAKIESQKTIDMGEILKHIYPQDLLKFGLI 296

Query: 234 HRDSIQMVENYGIVFLDEFDKIV 256
                 +     +V L   DK  
Sbjct: 297 PE---FVGRLPVMVSLQSLDKAA 316


>gi|220909725|ref|YP_002485036.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC
           7425]
 gi|219866336|gb|ACL46675.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece
           sp. PCC 7425]
          Length = 447

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 131/323 (40%), Gaps = 67/323 (20%)

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L++      E  +E+  +     N  + G    G   L++  ++++          ++ +
Sbjct: 119 LQEQSKGGAEDAVELQKS-----NILLIGPTGCGKTLLAQTLARMLDVPFAVADATTLTE 173

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
               +  D  + L+ +  V    ++  +  GI+++DE DKI  +     I   VS EGVQ
Sbjct: 174 AG-YVGEDVENILLRLLQVSDLDVEQAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQ 231

Query: 273 RDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----------------- 304
           + LL ++EG+  +                I+T +ILFI  GAF                 
Sbjct: 232 QALLKMLEGTVANVPPQGGRKHPYQDCIQIDTTNILFICGGAFVGLEKIVEQRTGKKAMG 291

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV   +  L++     ILT+
Sbjct: 292 FVREDGEPQGKEQRTADTLKHLEPEDLVKFGMIPEFIGRIPVLAVVDPLDEEALSEILTE 351

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + L+ QY++L+K + + L+F  D+I A+A  A    +     GAR L+ ++E ++ D+
Sbjct: 352 PRNALVKQYQKLLKMDNVQLEFKPDAIRAIAQEAYRRKT-----GARALRAIVEEIMLDV 406

Query: 401 SFSASDLQEKT-VVIDAEYVRLH 422
            +     ++ T  +I  E V   
Sbjct: 407 MYELPSRKDLTRCLITREMVEKR 429



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 128/306 (41%), Gaps = 22/306 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-------QLPADLRDELMP 53
           + L+    PREI   LD ++IGQQ+AK+ +++A+ N ++R        +  A+   EL  
Sbjct: 76  VSLSQIPKPREIKKYLDDHVIGQQEAKKILSVAVYNHYKRLSLLQEQSKGGAEDAVELQK 135

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+ V+   
Sbjct: 136 SNILLIGPTGCGKTLLAQTLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVSDLD 195

Query: 114 VRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           V +++R     DE+ + A  +    I   + G+       ++    + +           
Sbjct: 196 VEQAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPY 255

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--- 225
                 D +N     G +           K++     KK    V++      +++     
Sbjct: 256 QDCIQIDTTNILFICGGAFVG------LEKIVEQRTGKKAMGFVREDGEPQGKEQRTADT 309

Query: 226 -RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            + ++ + + +  +       I  L   D +        +   R  + +    L++  +V
Sbjct: 310 LKHLEPEDLVKFGMIPEFIGRIPVLAVVDPLDEEALSEILTEPRNALVKQYQKLLKMDNV 369

Query: 285 STKYGS 290
             ++  
Sbjct: 370 QLEFKP 375


>gi|15841981|ref|NP_337018.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551]
 gi|13882255|gb|AAK46832.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551]
 gi|323718963|gb|EGB28113.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           tuberculosis CDC1551A]
          Length = 426

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  + ++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLATMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLATMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|121534155|ref|ZP_01665980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
           carboxydivorans Nor1]
 gi|121307258|gb|EAX48175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus
           carboxydivorans Nor1]
          Length = 420

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 116 ESRRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           E    E+R+       + ILD   +  + A            +   +  K  D+E+  + 
Sbjct: 52  EDMELELRDIPKPKEIKEILDQYVIGQEEAKKTLAVAVYNHYKRINLGSKMEDVELQKS- 110

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
               N  + G    G   L++  +K++          S+ +    +  D  + L+ +   
Sbjct: 111 ----NIVMLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQA 165

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST----- 286
               ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S      
Sbjct: 166 ADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGG 224

Query: 287 ------KYGSINTDHILFIASGAF----------------------------------HV 306
                 ++  I+T +ILFI  GAF                                    
Sbjct: 225 RKHPHQEFIQIDTTNILFICGGAFDGIDKIISARTGKKTLGFGADIKSREKKQVGEILRQ 284

Query: 307 SRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DLL     PE  GR PV V L +L++     IL + ++ L+ QY++ ++ + + L+
Sbjct: 285 ILPEDLLKFGLIPEFVGRLPVIVTLDALDEDALVRILVEPKNALVKQYQKFLELDNVQLE 344

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           F ED++ A+A  A+  N+     GAR L+ ++E ++ ++ +      + T  ++  E V 
Sbjct: 345 FKEDALRAIAQEALKRNT-----GARGLRAIIENLMRNVMYEVPSRTDVTKCIVTKEVVL 399

Query: 421 LHIGDFPSETD 431
                     D
Sbjct: 400 NKEEPILVTAD 410



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           ++L     P+EI   LD+Y+IGQ++AK+ +A+A+ N ++R  L + + D EL   NI+++
Sbjct: 56  LELRDIPKPKEIKEILDQYVIGQEEAKKTLAVAVYNHYKRINLGSKMEDVELQKSNIVML 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 116 GPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 236 DTTNILFICGGAFDGID 252


>gi|307265820|ref|ZP_07547371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919215|gb|EFN49438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 424

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 60/309 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+  D     SN  + G    G   L++  +K++          S+ +    +  D  + 
Sbjct: 99  IKPDDVELQKSNILLLGPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAG-YVGEDVENI 157

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 158 LLKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA 216

Query: 285 ST-----------KYGSINTDHILFIASGAF---------HVSRPA-------------- 310
           +            ++  I+T +ILFI  GAF          + + +              
Sbjct: 217 NVPPQGGRKHPHQEFIQIDTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKD 276

Query: 311 ----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            ++PE  GR P+ V L  L+K D   ILT+ ++ L  QY++L +
Sbjct: 277 LSEILSHIMPQDLLKFGMIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVV 413
            +G+ L+F + ++  +AD+A+   +     GAR L+ ++E ++ D+ +        +  +
Sbjct: 337 LDGVKLEFDKKALGLIADMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCI 391

Query: 414 IDAEYVRLH 422
           I  + V   
Sbjct: 392 ITEDTVLKK 400



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M +     P+EI   LD+Y+IGQ+ AK+A+A+A+ N ++R        D EL   NILL+
Sbjct: 55  MGIGELPKPKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSE 194
           D +N   I GGA  GI  + E
Sbjct: 235 DTTNILFICGGAFEGIEKIIE 255


>gi|50120088|ref|YP_049255.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           atrosepticum SCRI1043]
 gi|61211478|sp|Q6D826|CLPX_ERWCT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49610614|emb|CAG74059.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 424

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 142/374 (37%), Gaps = 74/374 (19%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DSSNGIELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 222

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKAT 282

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   L+ L++     IL + ++ L  QY+ L  
Sbjct: 283 EGELLSHVEPGDLIKFGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFN 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++ A+A  A+   +     GAR L++++E  L +  +    L+    VV
Sbjct: 343 LEGVELEFRDEALTAIAKKAMVRKT-----GARGLRSIVEAALLETMYDLPSLESVDKVV 397

Query: 414 IDAEYVRLHIGDFP 427
           ID   +  H     
Sbjct: 398 IDESVIAGHSEPLL 411



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG 227


>gi|159039406|ref|YP_001538659.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
 gi|189044146|sp|A8M1K7|CLPX_SALAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157918241|gb|ABV99668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
          Length = 429

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 114 SNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 173 DIKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 232 PHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMP 291

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV  +++SL++S    ILT+  + L+ QY+ L + +G+ L+F +
Sbjct: 292 EDMLKFGLIPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQ 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   V+I  E V  ++
Sbjct: 352 PALEAVADQAMLRGT-----GARGLRAIMEEVLLSVMYEVPSNPDAARVLITREVVLENV 406

Query: 424 G 424
            
Sbjct: 407 N 407



 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPT 62
            P EI   LD Y++GQ  AK+A+A+A+ N ++R Q      P     EL   NILL+GPT
Sbjct: 63  KPMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEAVGAPGTDSVELAKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +     
Sbjct: 123 GCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKRAETGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV + A  +    I   + G+       ++    + +                 D +
Sbjct: 183 YIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQIDTT 242

Query: 178 NFDIPGGASVGILN 191
           N     G +   L+
Sbjct: 243 NVLFICGGAFAGLD 256


>gi|34556512|ref|NP_906327.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella
           succinogenes DSM 1740]
 gi|46576390|sp|Q7MAS4|CLPX1_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1
 gi|34482226|emb|CAE09227.1| CLP PROTEASE [Wolinella succinogenes]
          Length = 417

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 123/296 (41%), Gaps = 57/296 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++ +          S+ +    +  D  + L  +      
Sbjct: 112 SNILLIGPTGSGKTLMAQTLARFLNVPIAICDATSLTEAG-YVGEDVENILTRLLQAAEG 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 171 DVKKAE-RGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKH 229

Query: 288 ----YGSINTDHILFIASGAF--------------------------------HVSRPAD 311
               +  I+T  ILFI  GAF                                H+  P D
Sbjct: 230 PNQDFVQIDTSQILFICGGAFDGMIELIKRRMGGNSLGFHGDKKGKSEESALLHLVEPDD 289

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR  V   L  + K     ILT  ++ L+ QY++L   +   L F  ++
Sbjct: 290 LVSYGLIPELIGRLHVITTLDEITKEAMLEILTKPKNALVKQYQKLFTMDEAELSFEPEA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++A+A++A+   +     GAR L+ ++E V  D+ +   +L+E  V+I  E V   
Sbjct: 350 LEAIAELAIKRKT-----GARGLRAIIEEVTLDLMYDLPELKEYEVIITKECVENR 400



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 18/259 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTG 63
           +P+E+ S LD Y+IGQ+ AK+  ++A+ N ++R      L +E    +   NILL+GPTG
Sbjct: 62  TPKELKSALDEYVIGQERAKKVFSVAVYNHYKRIFKKELLEEEDETEISKSNILLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV- 122
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++ R  V 
Sbjct: 122 SGKTLMAQTLARFLNVPIAICDATSLTEAGYVGEDVENILTRLLQAAEGDVKKAERGIVF 181

Query: 123 ---REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
               ++ S  +E R I   + G+       ++    + +                 D S 
Sbjct: 182 IDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQDFVQIDTSQ 241

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              I GGA  G++ L +  +    +G    KK +    +    L   E D L+    +  
Sbjct: 242 ILFICGGAFDGMIELIKRRMGGNSLGFHGDKKGK---SEESALLHLVEPDDLVSYGLIPE 298

Query: 236 DSIQMVENYGIVFLDEFDK 254
               +   + I  LDE  K
Sbjct: 299 ---LIGRLHVITTLDEITK 314


>gi|224372109|ref|YP_002606481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia
           profundicola AmH]
 gi|223588882|gb|ACM92618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia
           profundicola AmH]
          Length = 407

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 130/305 (42%), Gaps = 57/305 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   ++   +K++          S+ +    +  D  + L+ +      
Sbjct: 106 SNILMIGPTGSGKTLIARTLAKLLDVPLAIADATSLTEAG-YVGEDVENVLLKLIQAADW 164

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 165 DIEKAQ-RGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKH 223

Query: 287 ---KYGSINTDHILFIASGAFH--------------------------------VSRPAD 311
              ++  I+T +ILFI  GAF                                 +  P D
Sbjct: 224 PNQEFIQIDTSNILFICGGAFDGLEEIIQKRLEGATVGFLGKTKEKLTKDDIFALVEPED 283

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR PV   L+ L + D   +LT+ +  LI QY+ L K + + L+F  ++
Sbjct: 284 LVKYGLIPELIGRLPVIATLRELGRDDLIRVLTEPKDALIKQYQALFKLDDVELEFEREA 343

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++A+AD A+   +     GAR L+ ++E  + DI F+  + +   ++I  + +       
Sbjct: 344 LEAIADKAIKRGT-----GARGLRAILEEAMVDIMFNLPEYRGYKIIITKDVIENKAEPI 398

Query: 427 PSETD 431
             + +
Sbjct: 399 LIKKE 403



 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 11/234 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+ I + LD Y+IGQ+ AK+ +++A+ N ++R    A    E+   NIL++GPTG GK
Sbjct: 59  LTPKAIKAHLDEYVIGQERAKKIISVAVYNHYKRILFGAKSDVEIQKSNILMIGPTGSGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV---- 122
           T I+R LA+L   P    + T  TE GYVG +VE ++  L+  A   + +++R  V    
Sbjct: 119 TLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAADWDIEKAQRGIVFIDE 178

Query: 123 REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            ++ S  +E R I   + G+       ++    + +                 D SN   
Sbjct: 179 IDKISRLSENRSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKHPNQEFIQIDTSNILF 238

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
             G +     L E+  K +       +  + +K    L +D+   L++ + + +
Sbjct: 239 ICGGAFD--GLEEIIQKRLEGATVGFLGKTKEK----LTKDDIFALVEPEDLVK 286


>gi|213022300|ref|ZP_03336747.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 171

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 123/169 (72%), Gaps = 11/169 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDK 163
           A   AEERILD L+     +             R+ FRKKLR+G++ DK
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDK 171


>gi|210621781|ref|ZP_03292810.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
 gi|210154545|gb|EEA85551.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275]
          Length = 412

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 141/341 (41%), Gaps = 65/341 (19%)

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           E + D ++G+        V          S+ E D+++  +     N  + G    G   
Sbjct: 70  EILNDYVIGQEKAKKALSVAVYNHYKRIYSNSENDVDIQKS-----NILLLGPTGSGKTL 124

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  +K +          ++ +    +  D  + L+ +     + ++  E  GI+++DE
Sbjct: 125 LAQTLAKTLNVPFAMADATALTEAG-YVGEDVENILLKLIQAADNDVEKAEK-GIIYIDE 182

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I+T +ILF
Sbjct: 183 IDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNREFIKIDTTNILF 242

Query: 299 IASGA----------------------------------FHVSRPADL-----LPEIQGR 319
           I  GA                                  +    P DL     +PE  GR
Sbjct: 243 ILGGAFDGLEQIIQRRSSEKTLGFGAKIESKKNLDLGKIYENVLPEDLLKYGIIPEFIGR 302

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L++     IL + ++ L+ QYK+L   E + L+F +D++  +A  A++ N+
Sbjct: 303 IPVIATLNMLDEDALVTILKEPKNALVKQYKKLFDIEDVELEFEDDALREIAKKAIDRNT 362

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
                GAR L++++E ++ D  +     +  + VV+  E V
Sbjct: 363 -----GARGLRSIVENIMMDTMYEVPSEENVEKVVVTKEAV 398



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 10/232 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+E++  L+ Y+IGQ+ AK+A+++A+ N ++R    ++   ++   NILL+GPTG GKT
Sbjct: 64  KPKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSNSENDVDIQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA+    PF   + T  TE GYVG +VE I+  L+  A N V ++      E+  
Sbjct: 124 LLAQTLAKTLNVPFAMADATALTEAGYVGEDVENILLKLIQAADNDVEKA------EKGI 177

Query: 128 INAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           I  +E  +D +  K+   S TR+V  + ++   +   E  +          + +      
Sbjct: 178 IYIDE--IDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNREF-IK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           +   N+  +         +   R S +K      + ES + +D+  ++ + +
Sbjct: 235 IDTTNILFILGGAFDGLEQIIQRRSSEKTLGFGAKIESKKNLDLGKIYENVL 286


>gi|328952153|ref|YP_004369487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452477|gb|AEB08306.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca
           acetoxidans DSM 11109]
          Length = 417

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 60/309 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +E+       SN  + G    G   L++  ++++          ++ +    +  D  + 
Sbjct: 102 VEMDGVELTKSNILLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAG-YVGEDVENI 160

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++  V    I+     GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 161 ILNLLQVADYDIEKA-TRGIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTMA 219

Query: 285 ST-----------KYGSINTDHILFIASGAFH---------------------------- 305
           S            ++  ++T +ILFI  GAF+                            
Sbjct: 220 SVPPKGGRKHPQQEFVKVDTTNILFICGGAFNGLEDIINTRIGKKTMGFVADIQSRVHRK 279

Query: 306 ------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                 + +P DL     +PE  GR PV   L+ L++     IL +  + L+ QY++L++
Sbjct: 280 QGKTLALVQPQDLLKFGLIPEFVGRLPVIATLEELDEEALVRILKEPRNALVKQYQKLLE 339

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            E + L FTE ++ A++  A+   S     GAR L+ ++E+ + DI +    ++  +  +
Sbjct: 340 MEQVHLRFTEGALAAISREALKRRS-----GARGLRAILEQAMLDIMYDIPSMKNVRECL 394

Query: 414 IDAEYVRLH 422
           I+ E +  H
Sbjct: 395 INEEVILKH 403



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           P EI +++D Y+IGQ+ AK+ +++A+ N ++R     ++   EL   NILL+GPTG GKT
Sbjct: 66  PAEIKNQIDEYVIGQERAKKILSVAVYNHYKRINSRVEMDGVELTKSNILLIGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II +L+ VA   + ++ R     DE+
Sbjct: 126 LLAQTLARILNVPFTIADATTLTEAGYVGEDVENIILNLLQVADYDIEKATRGIVYIDEI 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    +            +      D +N   I
Sbjct: 186 DKIARKSDSPSITRDVSGEGVQQALLKIIEGTMASVPPKGGRKHPQQEFVKVDTTNILFI 245

Query: 182 PGGASVGILNLSE 194
            GGA  G+ ++  
Sbjct: 246 CGGAFNGLEDIIN 258


>gi|307610563|emb|CBX00151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila 130b]
          Length = 424

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 126/307 (41%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 109 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 160

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 161 QKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------H 305
                      ++  ++T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDE 280

Query: 306 VSR-----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           VS+              L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K
Sbjct: 281 VSKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFK 340

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            EG  L+F ++++ A+A  A+        +GAR L++++E +L D  +    L+    VV
Sbjct: 341 MEGSELEFRDEALIAIAKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVV 395

Query: 414 IDAEYVR 420
           ID   V 
Sbjct: 396 IDESVVN 402



 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIVYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 185 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFI 244

Query: 183 GGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+         S +  S + K  + S  +    L + ESD LI
Sbjct: 245 CGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLI 294


>gi|54294747|ref|YP_127162.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila
           str. Lens]
 gi|148359405|ref|YP_001250612.1| ATP-dependent Clp protease ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|296107451|ref|YP_003619151.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|61211413|sp|Q5WVJ1|CLPX_LEGPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214781|sp|A5ID16|CLPX_LEGPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53754579|emb|CAH16063.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Lens]
 gi|148281178|gb|ABQ55266.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila str. Corby]
 gi|295649352|gb|ADG25199.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 424

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 126/307 (41%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 109 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 160

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 161 QKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------H 305
                      ++  ++T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDE 280

Query: 306 VSR-----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           VS+              L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K
Sbjct: 281 VSKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFK 340

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            EG  L+F ++++ A+A  A+        +GAR L++++E +L D  +    L+    VV
Sbjct: 341 MEGSELEFRDEALIAIAKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVV 395

Query: 414 IDAEYVR 420
           ID   V 
Sbjct: 396 IDESVVN 402



 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIVYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 185 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFI 244

Query: 183 GGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+         S +  S + K  + S  +    L + ESD LI
Sbjct: 245 CGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLI 294


>gi|255011712|ref|ZP_05283838.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           fragilis 3_1_12]
 gi|313149547|ref|ZP_07811740.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           fragilis 3_1_12]
 gi|313138314|gb|EFR55674.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           fragilis 3_1_12]
          Length = 415

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 95  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 145

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 146 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 203

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 204 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 263

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 264 NTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAI 323

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L F  +  + + D AV        +GAR L++++E ++
Sbjct: 324 LTEPKNSIIKQYIKLFEMDGVQLTFQPEVFEYIVDKAVEYK-----LGARGLRSIVETIM 378

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y +  +  
Sbjct: 379 MDVMFEIPSENQKEYEVTLDYAKHQLEK 406



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+Y+IGQ DAKR +A+++ N ++R  Q  +    E+   NI++V
Sbjct: 60  LNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 120 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 240 NTKNILFICGGAFDGIE 256


>gi|311896030|dbj|BAJ28438.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Kitasatospora setae KM-6054]
          Length = 428

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 144/350 (41%), Gaps = 67/350 (19%)

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
            AL         R    +  R G   D  I++         SN  + G    G   L++ 
Sbjct: 83  KALSVAVYNHYKRVQAGEAGRSGSGRDDAIEL-------AKSNILLLGPTGSGKTLLAQT 135

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            ++++          ++ +    +  D  + L+ +       ++  E  GI+++DE DK+
Sbjct: 136 LARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKV 193

Query: 256 VARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASG 302
             +     I   VS EGVQ+ LL ++EG++ S            ++  I+T ++LFI  G
Sbjct: 194 ARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGG 253

Query: 303 AF----------------------------------HVSRPADL-----LPEIQGRFPVR 323
           AF                                      P DL     +PE  GR PV 
Sbjct: 254 AFAGLERIIEGRAGAKGIGFGATIRSKREVDSADHFRQVMPEDLVKFGMIPEFIGRLPVI 313

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
             + +L++     ILT+ ++ L+ QY++L + +G+ L+FT D+++A+AD A+   +    
Sbjct: 314 TSVHNLDREALLQILTEPKNALVKQYRKLFELDGVELEFTRDALEAIADQAILRGT---- 369

Query: 384 IGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIGDFPSETDM 432
            GAR L+ +ME VL  + +     Q+   VV+  + V  H        DM
Sbjct: 370 -GARGLRAIMEEVLMSVMYEVPSRQDVARVVVTGDVVSKHAIPTLVPRDM 418



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 34/246 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59
            PREI   LD+Y++GQ  AK+A+++A+ N ++R Q     R         EL   NILL+
Sbjct: 63  KPREIYEFLDQYVVGQDLAKKALSVAVYNHYKRVQAGEAGRSGSGRDDAIELAKSNILLL 122

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-- 117
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++  
Sbjct: 123 GPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAET 182

Query: 118 ------RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEIS 161
                   D+V  ++              ++ +L  L G TA+           + G   
Sbjct: 183 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKH 234

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
             +  I++  T+          G    I   +       G+  + K  +     + ++M 
Sbjct: 235 PHQEFIQIDTTNVLFIVGGAFAGLERIIEGRAGAKGIGFGATIRSKREVDSADHFRQVMP 294

Query: 222 DESDRL 227
           ++  + 
Sbjct: 295 EDLVKF 300


>gi|319898777|ref|YP_004158870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
 gi|319402741|emb|CBI76288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           clarridgeiae 73]
          Length = 398

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+E+A +     N  + G    G   L++  ++++          ++
Sbjct: 69  NHYKRLAHQSKSNDVELAKS-----NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 123

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 124 TEAG-YVGEDVENIILKLLQSADYNVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEG 181

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 182 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISGRGEKTS 241

Query: 305 -------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE  GR PV   L+ L+      IL+ 
Sbjct: 242 IGFSAAVKAPDERRVGEIFRDLEPEDLIKFGLIPEFIGRLPVIATLEDLDICALVQILSQ 301

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY+ L + E + L F ED++  +A  A+   +     GAR L+++MER+L D 
Sbjct: 302 PKNALVKQYQRLFEMENVHLVFHEDALRVIAKKAIERKT-----GARGLRSIMERILLDT 356

Query: 401 SFSASDLQE-KTVVIDAEYVRLH 422
            F    L   + VVI ++ V   
Sbjct: 357 MFELPALVGVQKVVISSDVVEGK 379



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 41  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 160

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 161 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 220

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 221 ICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKF 271


>gi|297538720|ref|YP_003674489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           sp. 301]
 gi|297258067|gb|ADI29912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           sp. 301]
          Length = 426

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 139/351 (39%), Gaps = 77/351 (21%)

Query: 133 RILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +ILD   +    A  N         +    ++     +  +     SN  + G    G  
Sbjct: 71  KILDQYVIGQTHAKKNLAVAVYNHYKRLGHNNLSDGGQKDEVEISKSNILLIGPTGSGKT 130

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLI-----DMDTVHRDSIQMVEN 243
            L++  ++++          ++ +        E    +L+     D++   R        
Sbjct: 131 LLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAKR-------- 182

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV-----------STKYGS 290
            GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+             + ++  
Sbjct: 183 -GIVYIDEVDKISRKSENASITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQ 241

Query: 291 INTDHILFIASGAF-----------------------------------HVSRPADLL-- 313
           ++T +ILFI  GAF                                       P DL+  
Sbjct: 242 LDTTNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKGKNDIRQVGAVLRDVEPEDLIKF 301

Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
              PE  GR PV   L+SL+++    ILT+ ++ L  QY +L K EG+ L+F E ++  +
Sbjct: 302 GLIPEFIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVELEFRESALLLI 361

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E  L DI +    L+    VV+D   VR
Sbjct: 362 AKKALERKT-----GARGLRSILEHSLLDIMYELPSLENLSKVVVDEGVVR 407



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 14/235 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGP 61
           +P+EI   LD+Y+IGQ  AK+ +A+A+ N ++R               E+   NILL+GP
Sbjct: 65  TPQEICKILDQYVIGQTHAKKNLAVAVYNHYKRLGHNNLSDGGQKDEVEISKSNILLIGP 124

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+      V +++R  
Sbjct: 125 TGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAKRGI 184

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + +  +    I   + G+       ++    +                   D 
Sbjct: 185 VYIDEVDKISRKSENASITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQLDT 244

Query: 177 SNF-DIPGGASVGILNLSELFS--KVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +N   I GGA  G+  +  L S    +G G + K +  +++    L   E + LI
Sbjct: 245 TNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKGKNDIRQVGAVLRDVEPEDLI 299


>gi|323340666|ref|ZP_08080918.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323091789|gb|EFZ34409.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 410

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 59/311 (18%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +  ++ E  DT    SN  + G    G   L++  +K++          ++ +    +  
Sbjct: 97  NAMLEDENEDTELQKSNICLIGPTGSGKTYLAQSLAKLLNVPFAIADATTLTEAG-YVGE 155

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLV 279
           D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++
Sbjct: 156 DVENILLKLLQNADYDVERAQ-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKIL 214

Query: 280 EGSSVST-----------KYGSINTDHILFIASGAFHVSR-------------------- 308
           EG+  +            ++  I+T +ILFI  GAF                        
Sbjct: 215 EGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIEKIVKNRLGDKTIGFGVEARK 274

Query: 309 -------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                        P DL     +PE  GR P+   L+ L + D   ILT+ ++ L+ QY 
Sbjct: 275 NYDESKSLMQQIIPEDLLKFGLIPEFIGRLPIITALEKLTEDDLVRILTEPKNALVKQYA 334

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L+  +   L F +D++  +A +A+  N+     GAR L++++E  + D+ F    D   
Sbjct: 335 KLLSFDDCELVFEDDALREVARLAIERNT-----GARGLRSIIEATMRDVMFDVPSDKNI 389

Query: 410 KTVVIDAEYVR 420
             VVI  E V 
Sbjct: 390 AKVVITKETVD 400



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 9/236 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILL 58
           +LT   +P+EIV  L++Y+IGQ +AK+ +A+A+ N ++R        +   EL   NI L
Sbjct: 57  ELTDVLTPKEIVKTLNQYVIGQNEAKKTLAVAVYNHYKRINAMLEDENEDTELQKSNICL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 117 IGPTGSGKTYLAQSLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQ 176

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+    +  ++    + +          +     
Sbjct: 177 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKILEGTIANVPPQGGRKHPQQEFIQ 236

Query: 174 SDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            D +N   I GGA  GI  + +        G   + R +  +    + +   + L+
Sbjct: 237 IDTTNILFIVGGAFDGIEKIVKNRLGDKTIGFGVEARKNYDESKSLMQQIIPEDLL 292


>gi|262198159|ref|YP_003269368.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
 gi|262081506|gb|ACY17475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium
           ochraceum DSM 14365]
          Length = 422

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 65/325 (20%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           D +  D E ++E+  +     N  + G    G   L++  ++++          ++ +  
Sbjct: 100 DHKAGDDEEEVELQKS-----NILLLGPTGSGKTLLAQTLARILNVPFAIADATNLTEAG 154

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++ +       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 155 -YVGEDVENIIVSLLQNADHDIERAQ-RGIVYIDEIDKIARKSDNPSITRDVSGEGVQQA 212

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF------------------- 304
           LL ++EG+  +V  K G          ++T +ILFI  GAF                   
Sbjct: 213 LLKIIEGTLAAVPPKGGRKHPQQEFLQVDTSNILFICGGAFTGLEEIIENRIGQRMIGFG 272

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                             +P DL     +PE  GR P+   L  L++     ILT  ++ 
Sbjct: 273 ATMKPKKALDRWELIKEVQPEDLLKYGMIPEFVGRLPMIAPLHELSEDALVQILTQPKNA 332

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY++L + +G+ L FT  ++  +A +A    S     GAR L+ ++E  L DI +  
Sbjct: 333 LIKQYQKLFEMDGVKLKFTHGALYKIASLAQAQKS-----GARGLRAILESALLDIMYDT 387

Query: 405 SD-LQEKTVVIDAEYVRLHIGDFPS 428
                   V+I+ + V  H     +
Sbjct: 388 PSQHNISEVIINEDVVEKHSEPMVT 412



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P+ I   LD Y+IGQ+ AK+ +A+A+ N ++R    A   +E   L   NILL+GPTG 
Sbjct: 66  KPQHIKKILDEYVIGQERAKKILAVAVHNHYKRIDHKAGDDEEEVELQKSNILLLGPTGS 125

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A + +  ++R     
Sbjct: 126 GKTLLAQTLARILNVPFAIADATNLTEAGYVGEDVENIIVSLLQNADHDIERAQRGIVYI 185

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    L            +      D SN 
Sbjct: 186 DEIDKIARKSDNPSITRDVSGEGVQQALLKIIEGTLAAVPPKGGRKHPQQEFLQVDTSNI 245

Query: 180 -DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             I GGA  G+  + E    + M               +  +   + + L+
Sbjct: 246 LFICGGAFTGLEEIIENRIGQRMIGFGATMKPKKALDRWELIKEVQPEDLL 296


>gi|225848211|ref|YP_002728374.1| ATP-dependent protease ATP-binding subunit ClpX
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643885|gb|ACN98935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 405

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 63/297 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L+   ++++          ++ +        ES   RL+      
Sbjct: 104 SNILLIGPTGSGKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNADYD 163

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVST----- 286
            ++ +     GIV++DE DKI  +   N      VS EGVQ+ LL ++EG+  +      
Sbjct: 164 VEAAEK----GIVYIDEVDKIAKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGG 219

Query: 287 ------KYGSINTDHILFIASGAF--------------------------------HVSR 308
                 ++  I+T +ILFI  GAF                                   +
Sbjct: 220 RKHPHQEFIQIDTTNILFILGGAFVGLEDIIRQRLGKKAIGFGAEIKSKKEEGDLLEQVQ 279

Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL+     PE  GR PV   LK L++     +LT+ ++ LI QY+ L+  +GI L+FT
Sbjct: 280 PEDLIKFGLIPEFLGRIPVIATLKELDEDMLVRVLTEPKNALIKQYQALLAVDGIDLEFT 339

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ED++  +A  A+   +     GAR L+ ++E ++ DI + A + +  K VVID + V
Sbjct: 340 EDALREIAREAIKRKT-----GARGLRAIIEDIMLDIMYEAPNQKTLKKVVIDKDVV 391



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---ADLRDELMPKNILLVGPTGV 64
           +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R        +   E+   NILL+GPTG 
Sbjct: 55  TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKDLFKNTGVEVEKSNILLIGPTGS 114

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     
Sbjct: 115 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNADYDVEAAEKGIVYI 174

Query: 120 DEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           DEV + A  + +   I   + G+       ++    + +                 D +N
Sbjct: 175 DEVDKIAKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQIDTTN 234

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA VG+ ++          G   +I+   ++    L + + + LI
Sbjct: 235 ILFILGGAFVGLEDIIRQRLGKKAIGFGAEIKSKKEE-GDLLEQVQPEDLI 284


>gi|317508502|ref|ZP_07966169.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
 gi|316253193|gb|EFV12596.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974]
          Length = 426

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V R                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIGERVGRRGLGFGAQIRTREDVETRDYFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     ILT+ ++ L+ QY+ L + + + L+F +
Sbjct: 293 EDLIKFGLIPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFNK 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL  + +      +   VVI  E VR ++
Sbjct: 353 EAVEAVADQALLRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVITEETVRENV 407



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 13/241 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y++GQ  AKR +A+A+ N ++R Q    L        EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVVGQDPAKRTLAVAVYNHYKRIQAGDKLGRDGKGGVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           + +       DEV + A  +    I   + G+       ++                   
Sbjct: 176 KRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQ 235

Query: 170 ADTSSDISN--FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D +N  F + G  +     + E   +       +       +          + L
Sbjct: 236 EFIQIDTTNVLFIVAGAFAGLEKIIGERVGRRGLGFGAQIRTREDVETRDYFAEVMPEDL 295

Query: 228 I 228
           I
Sbjct: 296 I 296


>gi|259046802|ref|ZP_05737203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
 gi|259036570|gb|EEW37825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
          Length = 413

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 63/326 (19%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +  +++ E ++E+  +     N  + G    G   L++  ++++          ++ +  
Sbjct: 95  NHLLNEDEDEVELQKS-----NICLIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG 149

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 150 -YVGEDVENILLKLLQATDYDIDRAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQA 207

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF------------------- 304
           LL ++EG+  SV  + G          I+T +ILFI  GAF                   
Sbjct: 208 LLKILEGTIASVPPQGGRKHPHQELIQIDTSNILFIVGGAFDGIETIVKERLGAKVIGFG 267

Query: 305 --------HVS----------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                   H S          +   L+PE  GR P+   L+ L+K D   ILT   + L+
Sbjct: 268 SSNKNLSSHESLMQLIIPEDLQKFGLIPEFIGRLPITAALEPLSKEDLVNILTKPRNALV 327

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY++L   + + L+F   ++DA+A  A+   +     GAR L++++E V+ D+ F    
Sbjct: 328 KQYQKLFAMDDVELEFEPKALDAIASKAIERRT-----GARGLRSIIESVMMDLMFEIPS 382

Query: 407 LQE-KTVVIDAEYVRLHIGDFPSETD 431
             +   VV+    V         + D
Sbjct: 383 RNDITKVVVTESIVTGTGQPDLYDED 408



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILL 58
           ++     P+EI   LD Y++GQ+ AK+++A+A+ N ++R        +   EL   NI L
Sbjct: 55  EMIDVLKPQEIRKVLDEYVVGQEHAKKSLAVAVYNHYKRINHLLNEDEDEVELQKSNICL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+      +  + 
Sbjct: 115 IGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQATDYDIDRAE 174

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 KGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQELIQ 234

Query: 174 SDISNFDIPGGASVGILN 191
            D SN     G +   + 
Sbjct: 235 IDTSNILFIVGGAFDGIE 252


>gi|150388890|ref|YP_001318939.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|229889848|sp|A6TM62|CLPX_ALKMQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|149948752|gb|ABR47280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
           metalliredigens QYMF]
          Length = 420

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 133/307 (43%), Gaps = 60/307 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D +  D     SN  + G    G   L++  +K++          S+ +    +  D  +
Sbjct: 98  DTKTDDVELQKSNIMMLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQAADYDIEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  I+T +ILFI  GAF                            
Sbjct: 216 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEKLIQKRTGKTSMGFGADVKSKVVK 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                    +P DLL     PE  GR PV V L  L+++    ILT+ ++ L+ QYK+L 
Sbjct: 276 DIGGLLKQIQPEDLLKFGLIPEFVGRLPVIVTLDQLDEAALIEILTEPKNALVKQYKKLF 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + +G+ ++F  +++  +A+ A+   +     GAR L+ ++E ++ DI +      + + V
Sbjct: 336 EIDGVNVEFEGEALKLIAEKAIERKT-----GARGLRGIVEGLMMDIMYDVPSRDDIEKV 390

Query: 413 VIDAEYV 419
           ++  + V
Sbjct: 391 IVTKDTV 397



 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 12/295 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M L     P+EI   L+ Y+IGQ+ AK+A+A+A+ N ++R        D EL   NI+++
Sbjct: 55  MDLVDLPKPKEIKDILNGYVIGQEKAKKALAVAVYNHYKRINTDTKTDDVELQKSNIMML 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           D +N   I GGA  GI  L +  +     G    ++  V K    L++      I  + +
Sbjct: 235 DTTNILFICGGAFDGIEKLIQKRTGKTSMGFGADVKSKVVKDIGGLLKQ-----IQPEDL 289

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            +  +       +  +   D++        +   +  + +    L E   V+ ++
Sbjct: 290 LKFGLIPEFVGRLPVIVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEF 344


>gi|198276173|ref|ZP_03208704.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
 gi|198270985|gb|EDY95255.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135]
          Length = 393

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+  + +D EI+          SN  + G    G   L+   +K++        
Sbjct: 73  NHYKRLLQPKDKNDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 123

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   +++  E  GIVF+DE DKI  +     I   V
Sbjct: 124 ATVLTEAG-YVGEDIESILTRLLQVADYNVEEAE-RGIVFIDEIDKIARKGDNPSITRDV 181

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA------------ 303
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GA            
Sbjct: 182 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERKIAQRL 241

Query: 304 --------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                         +   L+PEI GR PV  +L  L++   R I
Sbjct: 242 NTNVVGYSAAKEAVKIDRGNLMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRMALRNI 301

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D A+        +GAR L++++E ++
Sbjct: 302 LTEPKNSIIKQYVKLFEMDGVKLEFEPEVFEYIVDKAIEYK-----LGARGLRSIVETIM 356

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F     Q +  V+  +Y +  +G 
Sbjct: 357 NDVMFEIPSQQTERFVVTLDYAKQQMGK 384



 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 6/227 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L+    P++I   LD+Y+IGQ DAKR +A+A+ N ++R   P D  D E+   NI++V
Sbjct: 38  LNLSELPKPKDIKEFLDQYVIGQDDAKRYLAVAVYNHYKRLLQPKDKNDVEIEKSNIIMV 97

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ R
Sbjct: 98  GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 157

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 158 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 217

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +  N     G +   +                  + +V+     LM+
Sbjct: 218 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKEAVKIDRGNLMQ 264


>gi|58265886|ref|XP_570099.1| chaperone [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110598|ref|XP_776126.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258794|gb|EAL21479.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226332|gb|AAW42792.1| chaperone, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 629

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 149/401 (37%), Gaps = 44/401 (10%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+L++GPTG GKT ++R LA++   PF+  + T +T+ GYVG +VE  +  L+  A
Sbjct: 218 IEKSNVLMIGPTGTGKTLMARTLAQMLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277

Query: 111 INIVRESRR-----DEVREQAS------------------INAEERILDA----LVGKTA 143
              V ++       DE+ + A                     A  R+L+     L  K  
Sbjct: 278 NYDVGKAEIGVIHIDEIDKIAKRGGSDVGGGGRDVGGEGVQQALLRLLEGTSLTLSAKAP 337

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
             ++                 +       +   +N  + G       N S   +K +G  
Sbjct: 338 AISSSTHNSSVSPFPPPLGGGMGSGSPSNTPKATNRAVFGDPPGWDFNNSS--NKGLGGK 395

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
           R  +  +            + D  +    V   +I  V +   V L+   +I+ R  G G
Sbjct: 396 RSVREGLPGYNSNGGGTPAKGDTFV----VDTSNILFVLSGAFVGLE---QIINRRIGKG 448

Query: 264 IGV--SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS-RPADLLPEIQGRF 320
           +GV  +   V   +L    G        + +  +      G   V      L+PE  GR 
Sbjct: 449 VGVVSTVPAVLSLILLQSIGFGAPLPQLTTDFSNQSSPLKGLSTVDLTNYGLIPEFLGRL 508

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+   L  L+  D   IL +  + L+ QY +L +  G  L FT+ ++  +A   ++    
Sbjct: 509 PILSTLHPLSIDDMVRILAEPNNALLKQYIKLFENYGSELCFTDKAVREIAREGLDRGGG 568

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
              +     + V+E VL D  F       +  +I    VR 
Sbjct: 569 ARGL-----RGVLEEVLLDAMFEVPGSSVRYCLITEAVVRK 604



 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 25/34 (73%)

Query: 8  SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ 41
          SP+ + + L +Y++GQ+ AKR +++A+ N ++R 
Sbjct: 10 SPKHLYAHLSKYVVGQERAKRILSVAVHNHYQRI 43


>gi|317129829|ref|YP_004096111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474777|gb|ADU31380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           cellulosilyticus DSM 2522]
          Length = 423

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 149/357 (41%), Gaps = 65/357 (18%)

Query: 128 INAEERILDALVGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
               E + D ++G+     T  V      +    + K  ++E+A +     N  + G   
Sbjct: 65  QEIREILNDYVIGQDQAKKTLSVAVYNHYKRVNSTKKNDEVELAKS-----NICLIGPTG 119

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G   L++  ++++          S+ +    +  D  + L+ +       ++  E  GI
Sbjct: 120 SGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGI 177

Query: 247 VFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINT 293
           +++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I+T
Sbjct: 178 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDT 237

Query: 294 DHILFIASGAFHVSR---------------------------------PADL-----LPE 315
            ++LF+  GAF                                     P DL     +PE
Sbjct: 238 TNVLFVVGGAFDGIEQIIKRRLGKKVIGFGSETTSEDLKEGQYLSKILPEDLLRYGLIPE 297

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   L+ L+++    ILT  ++ L+ QYK+L++ + + L+F++D++  +A  A+
Sbjct: 298 FIGRLPVISSLEPLDEAALVEILTKPKNALVKQYKKLLELDDVELEFSDDALKEVAKQAI 357

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDFPSETD 431
              +     GAR L++++E ++ D+ +           +I  E V+ H       +D
Sbjct: 358 ERKT-----GARGLRSIIEGIMLDVMYDLPSRTDIAKCIITDESVKGHKRPVLETSD 409



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+ +++A+ N ++R      +   EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNDYVIGQDQAKKTLSVAVYNHYKRVNSTKKNDEVELAKSNICLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175


>gi|119356466|ref|YP_911110.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides DSM 266]
 gi|166214769|sp|A1BE59|CLPX_CHLPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119353815|gb|ABL64686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides DSM 266]
          Length = 436

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E +    ++ +  +     N  + G    G   L++  + ++          
Sbjct: 108 HYKRIDSQEWAHDSDEVVIEKS-----NILLIGPTGTGKTLLAQTLANLLDVPFTIADAT 162

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 163 SLTEAG-YVGDDVETILARLLYASDFNLERTE-RGIIYVDEIDKIARKSANVSITRDVSG 220

Query: 269 EGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EGS V    K G         +INT +ILFI  GAF          VS+
Sbjct: 221 EGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTRNILFICGGAFEGLDKLIARRVSK 280

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L  L+++  R IL
Sbjct: 281 SSMGFGSKVKNKHTGYDPEILRFVTQDDLHEYGLIPEFIGRLPVISTLDPLDETALRSIL 340

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ +I QYK+L + +G+ L+FT++++D + D+A++  +     GAR L++V+E V+ 
Sbjct: 341 VEPKNAIIKQYKKLFEMDGVELEFTDEALDKVVDIAIDRGT-----GARALRSVLESVMI 395

Query: 399 DISFSASDLQE-KTVVIDAEYVRLH 422
           DI F    L+  K  VI A+ +   
Sbjct: 396 DIMFELPTLKGVKKCVITADTIENR 420



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 19/293 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63
           SP+ I+  L +Y++GQ+ AK+++A+A+ N ++R        D     +   NILL+GPTG
Sbjct: 79  SPKAIMESLGQYVVGQEIAKKSLAVAVYNHYKRIDSQEWAHDSDEVVIEKSNILLIGPTG 138

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   +  + R    
Sbjct: 139 TGKTLLAQTLANLLDVPFTIADATSLTEAGYVGDDVETILARLLYASDFNLERTERGIIY 198

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 199 VDEIDKIARKSANVSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTRN 258

Query: 179 FDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                G +   L+      +    MG G K K + +           E  R +  D +H 
Sbjct: 259 ILFICGGAFEGLDKLIARRVSKSSMGFGSKVKNKHTGYDP-------EILRFVTQDDLHE 311

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             +       +  +   D +      + +   +  + +    L E   V  ++
Sbjct: 312 YGLIPEFIGRLPVISTLDPLDETALRSILVEPKNAIIKQYKKLFEMDGVELEF 364


>gi|253681026|ref|ZP_04861829.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
 gi|253562875|gb|EES92321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum D str. 1873]
          Length = 431

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 139/319 (43%), Gaps = 60/319 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++++ D     SN  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 98  NVDIDDVELQKSNILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQNADYDVEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  INT +ILFI  GAF                            
Sbjct: 216 ASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEK 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                   S P DLL     PE  GR P+ V L+SLN      IL + ++ L+ QYK+L+
Sbjct: 276 DIGELLKESVPEDLLKFGLIPEFIGRLPIMVTLQSLNNDALVRILKEPKNALVKQYKKLL 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTV 412
             + + L+F E+++ ++AD A++  +     GAR L++++E V+ DI F        K V
Sbjct: 336 LMDNVELEFEEEALKSIADEAISRKT-----GARGLRSIIEEVMRDIMFDIPSKYDIKKV 390

Query: 413 VIDAEYVRLHIGDFPSETD 431
           +I+ + +     +     +
Sbjct: 391 IINKDTIENKKPELVLTEN 409



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GK
Sbjct: 62  KPSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSNVDIDDVELQKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 122 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA  G+  + E  ++    G   +++   +K   EL+++
Sbjct: 242 ICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLKE 283


>gi|237712736|ref|ZP_04543217.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1]
 gi|262408127|ref|ZP_06084674.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_22]
 gi|294645125|ref|ZP_06722850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CC 2a]
 gi|294809723|ref|ZP_06768410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229447213|gb|EEO53004.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1]
 gi|262353679|gb|EEZ02772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_22]
 gi|292639549|gb|EFF57842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           ovatus SD CC 2a]
 gi|294443057|gb|EFG11837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 414

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y ++ +  
Sbjct: 378 MDVMFEIPSEDKKEYKVTLDYAKMQLEK 405



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|319407113|emb|CBI80750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           sp. 1-1C]
          Length = 424

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 173 NVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 232 PQQEFLQVDTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEP 291

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F E
Sbjct: 292 EDLIKFGLIPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHE 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D++  +A  A+   +     GAR L+++MER+L +  F    L   + VVI ++ V   
Sbjct: 352 DALRVIAKKAIERKT-----GARGLRSIMERILLNTMFELPALVGVQEVVISSDVVEGK 405



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 67  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 187 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 247 ICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKF 297


>gi|226329067|ref|ZP_03804585.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
 gi|225202253|gb|EEG84607.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
          Length = 423

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 77/365 (21%)

Query: 135 LDALVGKTATSN--TREVFRKKLRD----GEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +  L      S   T    RK L D     E++ K + + V +    + N D   G  +G
Sbjct: 52  IKELAPHHERSELPTPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKANGVELG 111

Query: 189 ILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE- 242
             N+     +     ++     + + +         + +      D++ + +  +Q  + 
Sbjct: 112 KSNILLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY 171

Query: 243 -----NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--------- 286
                  GIV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S          
Sbjct: 172 DVQKAQRGIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHP 231

Query: 287 --KYGSINTDHILFIASGAFH------------------------------------VSR 308
             ++  ++T  ILFI  GAF                                        
Sbjct: 232 QQEFLQVDTSKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQKEKASEGELLAQVE 291

Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL+     PE  GR PV   L  LN+     IL + ++ L  QY+ L K EG+ L+F 
Sbjct: 292 PEDLIKFGLIPEFIGRLPVVATLGELNEEALIQILQEPKNALTKQYQALFKLEGVDLEFR 351

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++++ A+A  A+   +     GAR L++++E  L D  +     +  + VVID   +   
Sbjct: 352 KEALTAIAKKAMVRKT-----GARGLRSIVEAALLDTMYDLPSFENAEKVVIDEGVINGK 406

Query: 423 IGDFP 427
                
Sbjct: 407 SEPLV 411



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKANGVELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R     DE
Sbjct: 126 TLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++    +            +      D S    
Sbjct: 186 IDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQVDTSKILF 245

Query: 182 PGGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+          S +      K  +    +    L + E + LI
Sbjct: 246 ICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQKEKASE-GELLAQVEPEDLI 296


>gi|296394281|ref|YP_003659165.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Segniliparus
           rotundus DSM 44985]
 gi|296181428|gb|ADG98334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Segniliparus
           rotundus DSM 44985]
          Length = 426

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 134/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIIGERVGKRGLGFGAQIRTREDVETRDYFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     ILT+ ++ L+ QY+ L + + + L+F++
Sbjct: 293 EDLIKFGLIPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFSK 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL  + +      +   VVI  E VR ++
Sbjct: 353 EAVEAVADQALLRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVITEETVRENV 407



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 95/241 (39%), Gaps = 13/241 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPK 54
           +KL     P EI   L+ Y++GQ  AKR +A+A+ N ++R Q             EL   
Sbjct: 56  VKLDELPKPAEIREFLESYVVGQDPAKRTLAVAVYNHYKRIQAGDKPGRDGKASVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           + +       DEV + A  +    I   + G+       ++                   
Sbjct: 176 KRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQ 235

Query: 170 ADTSSDISN--FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D +N  F + G  +     + E   K       +       +          + L
Sbjct: 236 EFIQIDTTNVLFIVAGAFAGLEKIIGERVGKRGLGFGAQIRTREDVETRDYFAEVMPEDL 295

Query: 228 I 228
           I
Sbjct: 296 I 296


>gi|323703642|ref|ZP_08115285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531414|gb|EGB21310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfotomaculum nigrificans DSM 574]
          Length = 416

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 130/320 (40%), Gaps = 60/320 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 98  KVEDVELSKSNIIMLGPTGSGKTLLAQTLARLLNVPFAIADATSLTEAG-YVGEDVENIL 156

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 157 LKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 215

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       ++  ++T +ILFI  GAF                              
Sbjct: 216 VPPQGGRKHPHQEFIQLDTTNILFICGGAFDGIEKIIQNRTGKKTMGFGAEIQSKREQKI 275

Query: 309 --------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DLL     PE  GR PV V L +L++     ILT+ ++ L  QY++L + 
Sbjct: 276 GEILAQILPEDLLKFGLIPEFVGRLPVIVTLDALDEGALVRILTEPKNALTKQYEKLFEL 335

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           +G+ L+   D++  +A  A+   +     GAR L+ +ME V+ +I +     ++   VVI
Sbjct: 336 DGVSLEIQPDALREVAKEALKRKT-----GARGLRAIMEEVMLNIMYDIPSREDISKVVI 390

Query: 415 DAEYVRLHIGDFPSETDMYH 434
             + +           D   
Sbjct: 391 TRDAILKKGEPLLITVDHKK 410



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 8/236 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +     P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R  L   + D EL   NI+++
Sbjct: 53  LDMGDLPKPKEIKAILDQYVIGQESAKKQLAVAVYNHYKRINLGGKVEDVELSKSNIIML 112

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 113 GPTGSGKTLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 172

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 232

Query: 175 DISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           D +N     G +   +   +     K       +      QK    L +   + L+
Sbjct: 233 DTTNILFICGGAFDGIEKIIQNRTGKKTMGFGAEIQSKREQKIGEILAQILPEDLL 288


>gi|153809071|ref|ZP_01961739.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185]
 gi|149128404|gb|EDM19623.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185]
          Length = 414

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQTTARIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L++ +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYVKLLEMDGIKLTFEDSVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y +  +  
Sbjct: 378 MDVMFEIPSGSKKEYEVTLDYAKQQLEK 405



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLNELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|206895573|ref|YP_002247154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738190|gb|ACI17268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 417

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 132/313 (42%), Gaps = 57/313 (18%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN    G    G   +++  +K +          S+ +    +  D  + L+ + 
Sbjct: 104 TELGKSNILFIGPTGTGKTYVAQNLAKFLNVPFSISDATSLTEAG-YVGEDVENILLRLI 162

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 I   + YGIV++DE DKI  +     I   VS EGVQ+ LL +VEG+  +    
Sbjct: 163 QAADWDINRAQ-YGIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKIVEGTIANVPPQ 221

Query: 287 --------KYGSINTDHILFIASGAFH-------------------------------VS 307
                   ++  I+T  ILF+  GAF                                + 
Sbjct: 222 GGRKHPYQEFVQIDTSDILFMVGGAFEGLEDIIRQRLGKRTVGFMADPKALDSDEVLDMV 281

Query: 308 RPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P DLL     PE  GRFPV      L+  D   ILT  +++L+ QYK L   +G+ L+F
Sbjct: 282 IPEDLLKFGMIPEFVGRFPVVATFHKLSTKDLVDILTRPKNSLVKQYKALFAMDGVELEF 341

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVRL 421
           T+ +++A+A  A         +GAR L+ ++E  L D+ F   +  + K V+I ++ ++ 
Sbjct: 342 TDKALEAIAQEAEKRG-----MGARGLRAILEETLMDLMFEVPEKPEIKKVIITSKCIQG 396

Query: 422 HIGDFPSETDMYH 434
               F +E D+  
Sbjct: 397 EEPVFLTELDLAQ 409



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 17/261 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           +P++I S LD Y++GQ+ AKR V++A+ N ++R +          EL   NIL +GPTG 
Sbjct: 60  TPQQIKSFLDNYVVGQEKAKRIVSVAVYNHYKRVRSKLRGDSFGTELGKSNILFIGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  ++      
Sbjct: 120 GKTYVAQNLAKFLNVPFSISDATSLTEAGYVGEDVENILLRLIQAADWDINRAQYGIVYI 179

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +                 D S+ 
Sbjct: 180 DEIDKIAKKSENPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFVQIDTSDI 239

Query: 180 -DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
             + GGA  G+ ++           R  K  +        L  DE   ++  + + +  +
Sbjct: 240 LFMVGGAFEGLEDI--------IRQRLGKRTVGFMADPKALDSDEVLDMVIPEDLLKFGM 291

Query: 239 QMVENYGIVFLDEFDKIVARD 259
                     +  F K+  +D
Sbjct: 292 IPEFVGRFPVVATFHKLSTKD 312


>gi|149916366|ref|ZP_01904886.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
 gi|149809820|gb|EDM69672.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp.
           AzwK-3b]
          Length = 420

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 134/324 (41%), Gaps = 64/324 (19%)

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D ++G++       V             + DIE++ +     N  + G    G   L++ 
Sbjct: 75  DYVIGQSMAKRVLSVAVHNHYKRLNHSGKNDIELSKS-----NILLIGPTGCGKTLLAQT 129

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            ++++          ++ +    +  D  + ++ +      +++  +  GIV++DE DKI
Sbjct: 130 LARILDVPFTMADATTLTEAG-YVGEDVENIILKLLQSSEYNVERAQ-RGIVYIDEVDKI 187

Query: 256 VARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASG 302
             +     I   VS EGVQ+ LL L+EG+  +            ++  ++T +ILFI  G
Sbjct: 188 TRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQVDTTNILFICGG 247

Query: 303 AF----------------------------------HVSRPADL-----LPEIQGRFPVR 323
           AF                                      P DL     +PE  GR PV 
Sbjct: 248 AFAGLDRIISQRGKGSAMGFGADVRDVDARNTGEVFKDLEPEDLLKFGLIPEFVGRLPVI 307

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
             L+ L++     ILT+ ++ LI QY+ L + E   L FT+D++ A+A  A+   +    
Sbjct: 308 ATLEDLDEEALVTILTEPKNALIKQYQRLFELENAQLTFTDDALTAIARRAIARKT---- 363

Query: 384 IGARRLQTVMERVLEDISFSASDL 407
            GAR L++++E +L +  F    +
Sbjct: 364 -GARGLRSILEDILLNTMFELPGM 386



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 5/189 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++I + LD Y+IGQ  AKR +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 65  TPQDICAVLDDYVIGQSMAKRVLSVAVHNHYKRLNHSGKNDIELSKSNILLIGPTGCGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R     DEV
Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDEV 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            +    +    I   + G+       ++    +            +      D +N    
Sbjct: 185 DKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQVDTTNILFI 244

Query: 183 GGASVGILN 191
            G +   L+
Sbjct: 245 CGGAFAGLD 253


>gi|309360632|emb|CAP30954.2| hypothetical protein CBG_11883 [Caenorhabditis briggsae AF16]
          Length = 607

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 186/480 (38%), Gaps = 111/480 (23%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD++++GQ+ AK+ +A+ +   +RR +         +      +  T    T 
Sbjct: 139 PTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHN-------IESGASSIYQTHAQ-TQ 190

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            +    +  G                      ++ R +     + +R  +      + S+
Sbjct: 191 TASGAGKSDG-------------------GDSKMPRGVFYQ--DEMRLGQMASSELRNSL 229

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             ++         T   +  +  ++  R+   + + +  +      + SN  + G + VG
Sbjct: 230 MQQQSNNQPPSTSTHMHHQHQSQQQSSRNAPPTFRSLPEKEQAVRLEKSNILLVGPSGVG 289

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV------E 242
              L++  ++V+         + +  C    M        D+++V +  +Q         
Sbjct: 290 KTFLTQTLARVLD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKA 341

Query: 243 NYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             GIVFLDE DKI A + G+      VS EGVQ  LL LVEG+ V+ K G          
Sbjct: 342 QQGIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQ 401

Query: 290 -SINTDHILFIASGAFH-----VSRPAD-------------------------------- 311
             I+T  ILFIASGAF      V R  D                                
Sbjct: 402 VQIDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELL 461

Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + 
Sbjct: 462 GKADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVD 521

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F+ ++++ +A +A+   +     GAR L++++E  L +  F+      ++V +  E +
Sbjct: 522 LSFSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFTVPGSDIESVHVSREAI 576


>gi|302342889|ref|YP_003807418.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
 gi|301639502|gb|ADK84824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus
           baarsii DSM 2075]
          Length = 417

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 148/368 (40%), Gaps = 74/368 (20%)

Query: 118 RRDEVREQASINAEE------RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              E   Q    A +      R + A++        R    KK+    + +    I+   
Sbjct: 45  EIIEEEYQKEEAANQVNIPKPREIKAIIDDYVVEQER---AKKILAVAVHNHYKRIDAKA 101

Query: 172 TSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               +    SN  + G    G   L++  ++++          ++ +    +  D  + +
Sbjct: 102 DMGGVELQKSNILLIGPTGCGKTLLAQTLARIINVPFTIADATTLTEAG-YVGEDVENII 160

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           +++       ++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 161 LNLLQAADYDVERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIAS 219

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++  ++T +ILFI  GAF                              
Sbjct: 220 VPPKGGRKHPQQEFVKVDTTNILFICGGAFVGLDKIISNRIGAKSMGFTAEVKERKEETP 279

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                   RP DL+     PE  GR PV   L  L++     ILT+ ++ L+ QY++L +
Sbjct: 280 LGDTLAKCRPEDLIKFGLIPEFVGRLPVAATLDELSEDALIRILTEPKNALVKQYQKLFE 339

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L FT+++  A+A  A++  S     GAR L++++E  + DI +    L+  +  V
Sbjct: 340 FEGVDLKFTDEAYKAVAAEAISRKS-----GARGLRSILEAAMLDIMYDLPSLKGVQECV 394

Query: 414 IDAEYVRL 421
           +  E +  
Sbjct: 395 VGEEVITK 402



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 7/214 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            PREI + +D Y++ Q+ AK+ +A+A+ N ++R    AD+   EL   NILL+GPTG GK
Sbjct: 64  KPREIKAIIDDYVVEQERAKKILAVAVHNHYKRIDAKADMGGVELQKSNILLIGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  ++R     DE
Sbjct: 124 TLLAQTLARIINVPFTIADATTLTEAGYVGEDVENIILNLLQAADYDVERAQRGIVYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 184 IDKIARKSENPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFVKVDTTNILF 243

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           I GGA VG+  +          G   +++   ++
Sbjct: 244 ICGGAFVGLDKIISNRIGAKSMGFTAEVKERKEE 277


>gi|254821425|ref|ZP_05226426.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           intracellulare ATCC 13950]
          Length = 426

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE         V  T S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKGRDSRHEPVELTKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          V +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIIYERVGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L++     IL
Sbjct: 267 RGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDRESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT+D+++A+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYLRLFEMDGVELEFTDDALEAIADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 423

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          S+ +    +  D  + L+ +      
Sbjct: 111 SNILLIGPTGSGKTLLAQTLARTLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQIDTTNILFICGGAFDGLETIIKRRLGSKVIGFGAAGSASSETKDSAILQHVLP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR PV   L +L++   + ILT+ ++ ++ Q+++L+  + ++L+F E
Sbjct: 289 EDLLKFGLIPEFIGRLPVIATLDALDEEALKRILTEPKNAIVKQFQKLLDMDNVVLEFHE 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D+++ +A  A+   +     GAR L+ ++E ++ D+ +      + +  +I    V    
Sbjct: 349 DALETIAKEAIRRGT-----GARGLRAIIESIMLDVMYELPSRDDVQKCIITKAAVLREG 403

Query: 424 GDFPSETD 431
                  D
Sbjct: 404 PPIVLRKD 411



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           +L     P EI + LD+Y+IGQ+ AKRA+++A+ N ++R    +   D  EL   NILL+
Sbjct: 57  ELKDVPKPTEIKAVLDQYVIGQEHAKRALSVAVYNHYKRINAGSQKNDDVELSKSNILLI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   + ++ R
Sbjct: 117 GPTGSGKTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAER 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   L 
Sbjct: 237 DTTNILFICGGAFDGLE 253


>gi|167765437|ref|ZP_02437550.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC
           43183]
 gi|167697065|gb|EDS13644.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC
           43183]
          Length = 414

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 65/319 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +  D +++IE        SN  + G    G   L+   +K++           + +   
Sbjct: 101 QKAGDDDVEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAG- 152

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 153 YVGEDIESILTRLLQVADYNVAQAEQ-GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGL 211

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGA--------------------- 303
           L L+EGS V+            K   +NT +ILFI  GA                     
Sbjct: 212 LKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTNVVGYGA 271

Query: 304 -----------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR PV  +L  L+++  R ILT+ ++++I
Sbjct: 272 VRNTAAIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRTALRAILTEPKNSII 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY +L + +G+ L F +   + + D A+        +GAR L++++E ++ D  F    
Sbjct: 332 KQYVKLFEMDGVKLTFEDAVFEYIVDKAIEYK-----LGARGLRSIVETIMMDAMFEIPS 386

Query: 407 LQEKTVVIDAEYVRLHIGD 425
             +    +  +Y R  +  
Sbjct: 387 EHKDGFTVTLDYARAQLEK 405



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+Y+IGQ DAKR +++++ N ++R  Q   D   E+   NI++V
Sbjct: 59  LNLKELPKPVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V ++  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAQAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|114567170|ref|YP_754324.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338105|gb|ABI68953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 416

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 135/314 (42%), Gaps = 60/314 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +++ D     SN  + G    G   L++  ++++          S+ +    +  D  + 
Sbjct: 100 MKLDDVELQKSNIMMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENI 158

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 159 LLKLIQSADYDIEKAEK-GIIYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVA 217

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           S            ++  I+T +ILFI  GAF                             
Sbjct: 218 SVPPQGGRKHPHQEFIQIDTSNILFICGGAFEGIDKIIENRVGQKVMGFGADIKSREEKK 277

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                ++  P DL     +PE  GR P+ V L++L+      ILT+ ++ L+ QYK+L +
Sbjct: 278 IGEILNMILPQDLLKYGLIPEFVGRVPIIVTLEALDMDALISILTEPKNALVKQYKKLFE 337

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVV 413
            +G+ L+F ED++ A+AD A+  N+     GAR L+ ++E ++ ++ +          V 
Sbjct: 338 LDGVDLEFKEDALQAIADEALRRNT-----GARGLRAIIEDIMLEVMYEIPSRLDVTKVA 392

Query: 414 IDAEYVRLHIGDFP 427
           I  + +        
Sbjct: 393 ITRDVIEKKEKPLL 406



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           +L     P++I   LD Y+IGQ  AK+++A+A+ N ++R  L   L D EL   NI+++G
Sbjct: 57  ELGDIPKPQDIREILDDYVIGQDRAKKSLAVAVYNHYKRINLGMKLDDVELQKSNIMMLG 116

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 117 PTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDIEKAEKG 176

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A       I   + G+       ++    +                   D
Sbjct: 177 IIYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236

Query: 176 ISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQ 213
            SN   I GGA  GI  + E  +  KVMG G   K R   +
Sbjct: 237 TSNILFICGGAFEGIDKIIENRVGQKVMGFGADIKSREEKK 277


>gi|326334770|ref|ZP_08200976.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325693083|gb|EGD35016.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 415

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 133/320 (41%), Gaps = 68/320 (21%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E   +E++I+        SN  + G    G   ++   ++++             +   
Sbjct: 102 QEKDQEEVEIQK-------SNIVMVGQTGTGKTLMARTIAQMLNVPLAIVDATVFTEAGY 154

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
                ES     +  + + +   VE    GIVF+DE DKI  +     I   VS EGVQ 
Sbjct: 155 VGEDVES----ILSRLLQAADYNVEKAERGIVFIDEIDKISRKSDNPSITRDVSGEGVQH 210

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL L+EGS V+            KY  +NT+HILFIA GAF                  
Sbjct: 211 ALLKLLEGSIVNVPPKGGRKHPDQKYIEVNTEHILFIAGGAFDGIERIIARRMNRQAVGY 270

Query: 306 --------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                 +   L+PEI GR PV  ++  L+K   R+ILT  ++ L
Sbjct: 271 NSSKETKVDDKNLLQYITHKDLKDYGLIPEIIGRLPVLTYMDPLDKETLRMILTQPKNAL 330

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY +L   +GI L F ED+++ + + A+        +GAR L+++ E +L D  F+  
Sbjct: 331 VKQYIKLFAMDGITLSFEEDALNFIVEKALEYK-----LGARGLRSLCESILTDAMFNLP 385

Query: 406 DLQEKTVVIDAEYVRLHIGD 425
              EKT+V+   Y    +  
Sbjct: 386 STNEKTLVVTRSYAEDKLNK 405



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 11/254 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+  K+ +++A+ N ++R     D  + E+   NI++VG TG GK
Sbjct: 67  KPTEIKAFLDQYVIGQEATKKVLSVAVYNHYKRLLQEKDQEEVEIQKSNIVMVGQTGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R +A++   P   V+ T FTE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 127 TLMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILSRLLQAADYNVEKAERGIVFIDE 186

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    + +          +      +  +   
Sbjct: 187 IDKISRKSDNPSITRDVSGEGVQHALLKLLEGSIVNVPPKGGRKHPDQKYIEVNTEHILF 246

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I GGA  GI  +          G        V      L++  + + +    +  + I  
Sbjct: 247 IAGGAFDGIERIIARRMNRQAVGYNSSKETKVDD--KNLLQYITHKDLKDYGLIPEIIGR 304

Query: 241 VENYGIVFLDEFDK 254
           +    + ++D  DK
Sbjct: 305 L--PVLTYMDPLDK 316


>gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992114|gb|EEC58118.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC
           43243]
          Length = 422

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILVIGPTGCGKTYLAQTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADG 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  + YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVERAQ-YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTNASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   I+T +ILF+  GAF                                  H   P
Sbjct: 233 PQQELIPIDTTNILFMCGGAFDGLEKIIEGRMNQKSIGFNAEIGDRSNEDIGELFHKVTP 292

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L SL++     ILT+ ++ L+ QYK+L + + + L+FT 
Sbjct: 293 QDLVKFGLIPEFVGRVPVVVALDSLDEKALVRILTEPKNALVKQYKKLFEMDEVDLEFTP 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
            +++A+A  +    +     GAR L++++E V+ D  ++   D       I  + V    
Sbjct: 353 QAVEAIAKKSFERKT-----GARGLRSIIEEVMMDTMYTIPSDDNVAKCTITEDAVEGKA 407

Query: 424 GDFPSETD 431
               +  D
Sbjct: 408 EPVLTYRD 415



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 8/201 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M++     P EI   LD Y+IGQ++AK+ +++A+ N ++R    A+  D EL   NIL++
Sbjct: 62  MEINL-LKPMEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMRKAEDDDVELQKSNILVI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++ 
Sbjct: 121 GPTGCGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADGDVERAQY 180

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ +    +    I   + G+       ++                 +      
Sbjct: 181 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTNASVPPQGGRKHPQQELIPI 240

Query: 175 DISNF-DIPGGASVGILNLSE 194
           D +N   + GGA  G+  + E
Sbjct: 241 DTTNILFMCGGAFDGLEKIIE 261


>gi|295093765|emb|CBK82856.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Coprococcus sp. ART55/1]
          Length = 495

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 156/404 (38%), Gaps = 67/404 (16%)

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           L   PF  ++++KF     V ++ +   +   +         +      +     +E ++
Sbjct: 89  LTNMPFGNIDMSKFKAQNDVPKSQKVKKKAPKEKKQEEELTLKTIPAPHKIKAMLDEYVV 148

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
                K   S       K++    + D EI+          SN  + G    G   + + 
Sbjct: 149 GQEYAKKVISVAVYNHYKRVLTDSMDDIEIE---------KSNMLMVGPTGCGKTYIVKT 199

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            ++++          ++ +    +  D    L  +     + ++  E  GIVF+DE DKI
Sbjct: 200 IARLLKVPLAITDATTLTEAG-YIGDDVESVLSKLLAAADNDVEKAE-RGIVFIDEIDKI 257

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF 304
             + + N   VS E VQ+ LL L+EG+ V    GS           INT +ILFI  GAF
Sbjct: 258 AKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINTRNILFICGGAF 317

Query: 305 ---------------------------------------HVSRPADLLPEIQGRFPVRVH 325
                                                     R   ++PE  GR PV   
Sbjct: 318 PDIEEIIKQRISRQASMGFKAELKDKYDDDPNLLRQVTTEDLREFGMIPEFLGRLPVLFT 377

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L+K+ +  IL + ++ ++ QYK+L+  + + L F + + +A+A+ A+   +     G
Sbjct: 378 LDALDKNMYVSILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIAEEAIKRKT-----G 432

Query: 386 ARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPS 428
           AR L+ ++E+ + DI +    D     V I  +Y++        
Sbjct: 433 ARALRAIIEKFMLDIMYQIPRDDTIGRVTITGDYIKGKGSPIIE 476



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P +I + LD Y++GQ+ AK+ +++A+ N ++R    +    E+   N+L+VG
Sbjct: 128 LTLKTIPAPHKIKAMLDEYVVGQEYAKKVISVAVYNHYKRVLTDSMDDIEIEKSNMLMVG 187

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I + +ARL   P    + T  TE GY+G +VE ++  L+  A N V ++ R 
Sbjct: 188 PTGCGKTYIVKTIARLLKVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERG 247

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-- 178
            V     I+  ++I       +   +   V +  L+  E +D E+ +     ++ +    
Sbjct: 248 IV----FIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTT 303

Query: 179 ------FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
                   I GGA   I  + +       S   K          P L+R 
Sbjct: 304 INTRNILFICGGAFPDIEEIIKQRISRQASMGFKAELKDKYDDDPNLLRQ 353


>gi|298384792|ref|ZP_06994351.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 1_1_14]
 gi|298261936|gb|EFI04801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 1_1_14]
          Length = 414

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 263 NTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y +  +  
Sbjct: 378 MDVMFEIPSESKKEYKVTLDYAKQQLEK 405



 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|145223178|ref|YP_001133856.1| ATP-dependent protease ATP-binding subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|315443636|ref|YP_004076515.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. Spyr1]
 gi|189044140|sp|A4T2N8|CLPX_MYCGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145215664|gb|ABP45068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           gilvum PYR-GCK]
 gi|315261939|gb|ADT98680.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. Spyr1]
          Length = 426

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVHSKAEIDTQDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+F E
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFAE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V  ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVDDNV 407



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIRDFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRAEPVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|331270304|ref|YP_004396796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
 gi|329126854|gb|AEB76799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum BKT015925]
          Length = 431

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 60/319 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+++ D     SN  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 98  DVDIDDVELQKSNILLLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQNADYDVEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  INT +ILFI  GAF                            
Sbjct: 216 ASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEK 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                   S P DLL     PE  GR P+ V L+SLN +    IL + ++ L+ QYK+L+
Sbjct: 276 DIGELLKASVPEDLLKFGLIPEFIGRLPIMVTLQSLNNNALVRILKEPKNALVKQYKKLL 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTV 412
             + + L+F E+++ A+AD A++  +     GAR L++++E  + DI F        K V
Sbjct: 336 LMDNVELEFEEEALKAIADEAISRKT-----GARGLRSIIEETMRDIMFDIPSKYDIKKV 390

Query: 413 VIDAEYVRLHIGDFPSETD 431
           +I+ + +     +     +
Sbjct: 391 IINKDTIENKEPELVLTEN 409



 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD Y+IGQ  AK+A+A+A+ N ++R     D+ D EL   NILL+GPTG GK
Sbjct: 62  KPSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDIDDVELQKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 122 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           I GGA  G+  + E  ++    G   +++   +K   EL++
Sbjct: 242 ICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLK 282


>gi|55820660|ref|YP_139102.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMG 18311]
 gi|55822551|ref|YP_140992.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus CNRZ1066]
 gi|81820326|sp|Q5M0S4|CLPX_STRT1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81820490|sp|Q5M5B0|CLPX_STRT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|55736645|gb|AAV60287.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           LMG 18311]
 gi|55738536|gb|AAV62177.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus
           CNRZ1066]
 gi|312277987|gb|ADQ62644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus
           thermophilus ND03]
          Length = 408

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 147/371 (39%), Gaps = 67/371 (18%)

Query: 115 RESRRDEV-REQASINAEERILDALVGKTATSNTREV-----FRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L       +  +           +    ++   D +
Sbjct: 46  REETAEEVLADLAETPKPKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDND 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VDLQKSNILMI---GPTGSGKTYLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MKEIVAEDIQKFGLIPEFIGRLPVLATLEQLTVDDLVRILTEPRNALVKQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F +D+++A+A  A+   +     GAR L++++E V+ D+ F    L++ T V I  E
Sbjct: 341 ELEFDQDALEAIASKAIERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKE 395

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 396 AVDGKAAPVLE 406



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 11/236 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L     P+E++  L+ Y++GQ   KRA+A+A+ N ++R        D   +L   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +                   
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 175 DISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D  N   I GGA  GI ++    L  K++G G+  K          E++ ++  + 
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKF 292


>gi|308270288|emb|CBX26900.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
           Desulfobacterium sp.]
          Length = 592

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 104/427 (24%), Positives = 173/427 (40%), Gaps = 81/427 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDEL---MPKN 55
           KL F+  P  ++S LD+YII Q +AK  +A  +   + R        DL D++   +  N
Sbjct: 56  KLNFDLKPESLISYLDQYIIRQDNAKAVLATKICTHYNRIKTFNSYPDLADDMFCGVKNN 115

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           +L++GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV  A + + 
Sbjct: 116 VLMLGPTGVGKTYMIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADDNIE 175

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            ++   V     I+  ++I  +     A  +   V R  L+  E  + E+D++V      
Sbjct: 176 LAQYGIVY----IDEIDKIASSHNLIGADVSRTGVQRALLKPLE--ETEVDMKVPHDPIS 229

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +            I        K       K I   V   + +L +    R         
Sbjct: 230 MM---------QEIERFRRTGKKNRRVVNTKNILFIVSGAFFDLAKIIQKR--------- 271

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
                              I     G G    +     ++L  V+   +  ++G      
Sbjct: 272 -------------------IANNTIGFGSTTPKTRSYANVLKHVKSEDL-IEFG------ 305

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                              E  GR PVR  L+ L+ +D   IL++  + +IL  K     
Sbjct: 306 ----------------FESEFVGRLPVRAVLEDLDNNDLFEILSNPNNPIILGKKLDFAA 349

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVV 413
            GI + F E ++  LA+ A +      +IGAR L + +E+ L  I F       + K   
Sbjct: 350 YGIDIKFEEKALRILANRAFD-----ENIGARGLVSAIEKAL--IIFERYLPSTKIKKFP 402

Query: 414 IDAEYVR 420
           + A+ + 
Sbjct: 403 VTADAIE 409


>gi|145596009|ref|YP_001160306.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
 gi|189044149|sp|A4XAH9|CLPX_SALTO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145305346|gb|ABP55928.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
          Length = 429

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 114 SNILLLGPTGCGKTHLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 173 DIKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 231

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 232 PHQEFIQIDTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMP 291

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV  +++SL++     ILT+  + L+ QY+ L + +G+ L+F +
Sbjct: 292 EDMLKFGLIPEFIGRLPVITNVRSLDRPALVQILTEPRNALVRQYQRLFELDGVELEFEQ 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL  + +      +   V+I+ E V  ++
Sbjct: 352 SALEAIADQAMLRGT-----GARGLRAIMEEVLLSVMYEVPSNPDAARVLINREVVLENV 406

Query: 424 G 424
            
Sbjct: 407 N 407



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPT 62
            P EI   LD Y++GQ  AK+A+A+A+ N ++R Q      P+    EL   NILL+GPT
Sbjct: 63  KPMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEATGAPSADSVELAKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   ++ +     
Sbjct: 123 GCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDIKRAETGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV + A  +    I   + G+       ++    + +                 D +
Sbjct: 183 YIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQIDTT 242

Query: 178 NFDIPGGASVGILN 191
           N     G +   L+
Sbjct: 243 NVLFICGGAFAGLD 256


>gi|95930402|ref|ZP_01313138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133442|gb|EAT15105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfuromonas acetoxidans DSM 684]
          Length = 414

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 64/336 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           + + KK+    + +    I  A  + D+    SN  + G    G   L++  ++V+    
Sbjct: 78  QNWAKKVLSVAVYNHYKRIRYAAKNDDVEIQKSNILLLGPTGSGKTLLAQTLARVLNVPF 137

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + ++ +       I+  +  GI+++DE DKI  +     I
Sbjct: 138 AMADATNLTEAG-YVGEDVENIVLSLVQAADYDIEKAQ-RGIIYIDEIDKIARKSESPSI 195

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG++ S            ++  ++T +ILFI  GAF       
Sbjct: 196 TRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQEFIKVDTANILFICGGAFSGLEDVI 255

Query: 305 -------------HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKS 332
                        +V  P++                   L+PE  GR PV   L+ L++ 
Sbjct: 256 SQRIGKKSIGFGANVRMPSETTLGKLLKDIEPGDLLKYGLIPEFIGRLPVIATLEELDEE 315

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
              LIL + ++ L+ QY++L+  E + L FT+ ++ A+A  A    +     GAR L+++
Sbjct: 316 ALVLILKEPKNALVRQYQKLLDLEDVALKFTDGALVAVAKEAARRKT-----GARGLRSI 370

Query: 393 MERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +E V+ DI +        K VVI  + V        
Sbjct: 371 LEEVMLDIMYDIPSQDHVKEVVISEDVVVKKSAPLI 406



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 8/228 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y++GQ  AK+ +++A+ N ++R +  A   D E+   NILL+GPTG GKT
Sbjct: 64  PAEIRATLDDYVVGQNWAKKVLSVAVYNHYKRIRYAAKNDDVEIQKSNILLLGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  LV  A   + +++R     DE+
Sbjct: 124 LLAQTLARVLNVPFAMADATNLTEAGYVGEDVENIVLSLVQAADYDIEKAQRGIIYIDEI 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++                 +      D +N    
Sbjct: 184 DKIARKSESPSITRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQEFIKVDTANILFI 243

Query: 183 GGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L   +S+   K            S       L   E   L+
Sbjct: 244 CGGAFSGLEDVISQRIGKKSIGFGANVRMPSETTLGKLLKDIEPGDLL 291


>gi|148381179|ref|YP_001255720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932077|ref|YP_001385554.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935476|ref|YP_001388960.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. Hall]
 gi|153938984|ref|YP_001392581.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum F str. Langeland]
 gi|168179120|ref|ZP_02613784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum NCTC 2916]
 gi|168183547|ref|ZP_02618211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Bf]
 gi|170756735|ref|YP_001782869.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum B1 str. Okra]
 gi|226950658|ref|YP_002805749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A2 str. Kyoto]
 gi|237796686|ref|YP_002864238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Ba4 str. 657]
 gi|166989835|sp|A7FYI1|CLPX_CLOB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167008726|sp|A5I6W0|CLPX_CLOBH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009011|sp|A7GIH1|CLPX_CLOBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229889850|sp|B1IND6|CLPX_CLOBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763840|sp|C1FLA5|CLPX_CLOBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491253|sp|C3KU76|CLPX_CLOB6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148290663|emb|CAL84792.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928121|gb|ABS33621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931390|gb|ABS36889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A str. Hall]
 gi|152934880|gb|ABS40378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum F str. Langeland]
 gi|169121947|gb|ACA45783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum B1 str. Okra]
 gi|182670079|gb|EDT82055.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum NCTC 2916]
 gi|182673331|gb|EDT85292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Bf]
 gi|226844071|gb|ACO86737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262137|gb|ACQ53170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum Ba4 str. 657]
 gi|295320565|gb|ADG00943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum F str. 230613]
 gi|322807544|emb|CBZ05119.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium
           botulinum H04402 065]
          Length = 429

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F +
Sbjct: 287 GDLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLHI 423
           +++  +AD A+N N+     GAR L+ ++E ++ +I F     +    V+++ + ++   
Sbjct: 347 EALKEIADEAINRNT-----GARGLRAIIEDMMREIMFDIPSQENIGKVIVNEDCIKTKK 401

Query: 424 GDFPSET 430
            +     
Sbjct: 402 PELIEAE 408



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 12/297 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+
Sbjct: 55  VDLTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +N   I GGA  G+  + E  ++    G   +I+   +K   +L++D     I    +
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKD-----IMPGDL 289

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +  +       +  +   DK+        +   +  + +    L E   V  ++  
Sbjct: 290 LKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346


>gi|83949689|ref|ZP_00958422.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
 gi|83837588|gb|EAP76884.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens
           ISM]
          Length = 421

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 59/283 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 112 SNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-YVGEDVENIILKLLQSSEY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +         
Sbjct: 171 NVERAQ-RGIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 230 PQQEFLQVDTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEVFKELEP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L+ L++     ILT+ ++ L+ QY+ L + EG  L FT+
Sbjct: 290 EDLLKFGLIPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQYQRLFELEGAQLSFTD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           D++ A+A  A+   +     GAR L++++E +L +  F    L
Sbjct: 350 DALKAIAKRAIQRKT-----GARGLRSILEDILLNTMFELPGL 387



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI   LD Y+IGQ  AKR +++A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 65  TPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSGKSGDIELQKSNILLIGPTGCGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V +    +    I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 182 PGGASVGILNL---SELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRL 227
             G +   L+           MG G   +      V + + EL  ++  + 
Sbjct: 245 ICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEVFKELEPEDLLKF 295


>gi|213584973|ref|ZP_03366799.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 167

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 95/165 (57%), Positives = 120/165 (72%), Gaps = 11/165 (6%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL  +LR E+ PKNIL++GPTGVG
Sbjct: 3   EMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR    ++ R +
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYR 122

Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGE 159
           A   AEERILD L+     +             R+ FRKKLR+G+
Sbjct: 123 AEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQ 167


>gi|29349251|ref|NP_812754.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253573098|ref|ZP_04850489.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6]
 gi|46576551|sp|Q8A128|CLPX_BACTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29341159|gb|AAO78948.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837321|gb|EES65421.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6]
          Length = 414

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 263 NTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y +  +  
Sbjct: 378 MDVMFEIPSESKKEYKVTLDYAKQQLEK 405



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 436

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 60/309 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVENILLKIIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  + YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  S         
Sbjct: 171 DIERAQ-YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 230 PQQEFIQIDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L +L+K+    ILT+ +++L+ QY+ L   +GI L+F  
Sbjct: 290 QDLVKFGLIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEG 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           ++++A+AD ++   +     GAR L+ +ME  + D+ ++A  D    +  I  + V    
Sbjct: 350 EALEAIADKSMERKT-----GARGLRAIMENSMMDLMYTAPSDDSIVSCTITKDVVDGTG 404

Query: 424 GDFPSETDM 432
                  ++
Sbjct: 405 EALVERREL 413



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 10/231 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 65  LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +  ++      DE
Sbjct: 125 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQIDTTNILF 244

Query: 181 IPGGASVGILNLSELFSKV----MGSGRKKKIRMSVQKCYPELMRDESDRL 227
           I GGA  G+  + E           +  + K   +V +   E+M  +  + 
Sbjct: 245 ICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKF 295


>gi|160933530|ref|ZP_02080918.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753]
 gi|156867407|gb|EDO60779.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753]
          Length = 439

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 149/387 (38%), Gaps = 64/387 (16%)

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           +E  +  L D A    R +      E   +  EE               +      + + 
Sbjct: 40  IELCMSILEDEADFQERSANYHNNDETVLLKPEEIKAKLDEYVIGQEKAKIALSVAVYNH 99

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
                    +V    S++    + G   VG   L++  +K++          ++ +    
Sbjct: 100 YKRIYFGSDDVEINKSNVL---LLGPTGVGKTLLAQTLAKILDVPFAIADATTLTEAG-Y 155

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 156 VGEDVENILLRLIQAADFDVERAE-RGIIYVDEIDKIARKSENPSITRDVSGEGVQQALL 214

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGA---------------------- 303
            ++EG+  +            ++  I+T +ILFI  GA                      
Sbjct: 215 KILEGTVSNVPPQGGRKHPQQEFIQIDTSNILFICGGAFDGLEKVVEKRTGSSSLGFGAQ 274

Query: 304 -----------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                             H      L+PE+ GR PV   L  L++     ILT+ +++++
Sbjct: 275 VRSKKELDTTKWMGEVVPHDLVKYGLIPELVGRLPVITALDGLDQEALVRILTEPKNSIL 334

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS- 405
            QYK+L   + + LDF + +++A+A  A++  +     GAR L+++ME  L D+ +    
Sbjct: 335 KQYKKLFALDKVELDFEKSALEAVAQKAIDRRT-----GARGLRSIMEETLTDLMYKVPS 389

Query: 406 DLQEKTVVIDAEYVRL-HIGDFPSETD 431
           D   + V++D E V+           D
Sbjct: 390 DYSVEKVIVDGETVKNGREAKLIHNPD 416



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI ++LD Y+IGQ+ AK A+++A+ N ++R    +D   E+   N+LL+GPTGVGK
Sbjct: 69  LKPEEIKAKLDEYVIGQEKAKIALSVAVYNHYKRIYFGSD-DVEINKSNVLLLGPTGVGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     DE
Sbjct: 128 TLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENILLRLIQAADFDVERAERGIIYVDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    + +          +      D SN   
Sbjct: 188 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQIDTSNILF 247

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 248 ICGGAFDGLEKVVE 261


>gi|108800542|ref|YP_640739.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp.
           MCS]
 gi|119869681|ref|YP_939633.1| ATP-dependent protease ATP-binding subunit [Mycobacterium sp. KMS]
 gi|126436158|ref|YP_001071849.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp.
           JLS]
 gi|123069914|sp|Q1B601|CLPX_MYCSS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214788|sp|A3Q2I1|CLPX_MYCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214789|sp|A1UJ35|CLPX_MYCSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|108770961|gb|ABG09683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           sp. MCS]
 gi|119695770|gb|ABL92843.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. KMS]
 gi|126235958|gb|ABN99358.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           sp. JLS]
          Length = 426

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE S       V  T S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKSRDSRTEPVELTKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          V +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L+K     IL
Sbjct: 267 RGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGLIPEFIGRLPVVASVTNLDKESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT D++DA+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYTRLFEMDGVELEFTGDALDAIADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLENYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRTEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|160890573|ref|ZP_02071576.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492]
 gi|270295710|ref|ZP_06201910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D20]
 gi|317479885|ref|ZP_07939002.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36]
 gi|156859572|gb|EDO53003.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492]
 gi|270273114|gb|EFA18976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D20]
 gi|316903959|gb|EFV25796.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36]
          Length = 414

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDGGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 263 NTHVVGYSAVRNTATIDKSNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRAALRSI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + + + L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDNVKLTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D  F     Q+   V+  +Y +  +  
Sbjct: 378 MDAMFEIPSEQKDNFVVTLDYAKRQLEK 405



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q       E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDGGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|71988663|ref|NP_001021562.1| hypothetical protein K07A3.3 [Caenorhabditis elegans]
 gi|51988143|gb|AAU20843.1| Hypothetical protein K07A3.3b [Caenorhabditis elegans]
          Length = 518

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 179/475 (37%), Gaps = 113/475 (23%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------------------- 44
             P+EIV  L++Y++GQ++AK+ +A+A+   +RR +                        
Sbjct: 99  LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158

Query: 45  --------------------------ADLRDELM-PKNILLVGPTGVGKTAISRRLARLA 77
                                        +D ++   N++L+G +G GKT ++++LA + 
Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P +  + T  T+ GYVG +V+ +I+ L+  A+  + + +R  V            LD 
Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQRGIV-----------FLDE 267

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG-ASVGILNLSELF 196
                 +S+       +   G+   + +   V  +   + +   P    ++   N+  + 
Sbjct: 268 FDKIYTSSDPLHTSGNRDVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTIDTSNILFIA 327

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           S    +      R   ++    L      +L D DT  +                     
Sbjct: 328 SGAFSNIEHIVARRMDKRSLGFLSATSPHKLGDQDTTEKL-------------------- 367

Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
                       E V +    +++             D    I+ G         ++PE+
Sbjct: 368 -------RDSDEEIVSKARNEMIKQC-----------DQGDLISFG---------MIPEL 400

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GRFPV V    L+K+    +LT+   +LI Q K+  + E + L F+  +I+A+A++AV 
Sbjct: 401 VGRFPVIVPFHCLDKTHLMSVLTEPRGSLIAQTKKFFENENVELRFSPAAIEAIAEMAVK 460

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431
             +     GAR L++++E+ + +  +       K V I  + ++ H        +
Sbjct: 461 RKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEITDQNLKDHSFTVIENQN 510


>gi|295397568|ref|ZP_06807647.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974192|gb|EFG49940.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans
           ATCC 11563]
          Length = 418

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 154/381 (40%), Gaps = 62/381 (16%)

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
           ++++D  ++  R+     V           + D ++G+     T  V          S+ 
Sbjct: 42  QEIIDEEVDQERQESYTMVEPPKPTEIRSILDDYVIGQDQAKKTLSVAVYNHYKRISSNN 101

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E + +    S   SN  + G    G   L++  ++++          ++ +    +  D 
Sbjct: 102 ETNDD--GVSLQKSNILLMGPTGSGKTYLAQTLARILDVPFAIADATTLTEAG-YVGEDV 158

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG
Sbjct: 159 ENILVKLMQSADFDVERAQK-GIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILEG 217

Query: 282 SSVST-----------KYGSINTDHILFIASGAFHVSRP--------------------- 309
           +  +            +   ++T +ILFI  GAF    P                     
Sbjct: 218 TEANIPPQGGRKHPHQELIQVDTTNILFIVGGAFDGIEPIIKERLGEKVIGFGNSSNNHI 277

Query: 310 ------------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                               L+PE  GR P+  +L  L K D   ILT  ++ L+ QY++
Sbjct: 278 LNDNDAIMQQAIPQDLQTFGLIPEFIGRLPIMANLNKLTKDDLVHILTQPKNALVKQYQQ 337

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-K 410
           L+K + + L FT+++++A+A  A++  +     GAR L++++E  + +I F     ++  
Sbjct: 338 LLKMDNVELIFTDEALEAIAQKALDRKT-----GARGLRSIIEEAMLEIMFEIPSREDVS 392

Query: 411 TVVIDAEYVRLHIGDFPSETD 431
            V+I    +   I     + D
Sbjct: 393 KVMITESVINGDIEPDLFDLD 413



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64
            P EI S LD Y+IGQ  AK+ +++A+ N ++R     +  D+   L   NILL+GPTG 
Sbjct: 64  KPTEIRSILDDYVIGQDQAKKTLSVAVYNHYKRISSNNETNDDGVSLQKSNILLMGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++     
Sbjct: 124 GKTYLAQTLARILDVPFAIADATTLTEAGYVGEDVENILVKLMQSADFDVERAQKGIIYV 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++      +                 D +N 
Sbjct: 184 DEIDKIARKSENVSITRDVSGEGVQQALLKILEGTEANIPPQGGRKHPHQELIQVDTTNI 243

Query: 180 DIPGGASVGILN 191
               G +   + 
Sbjct: 244 LFIVGGAFDGIE 255


>gi|332637218|ref|ZP_08416081.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella cibaria
           KACC 11862]
          Length = 417

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 61/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNIAMIGPTGSGKTYIAQSMAKLLNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 174 DVERAET-GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF-----------------------------------HVSR 308
              ++  I+T +ILFI  GAF                                       
Sbjct: 233 PNQEFIQIDTTNILFIVGGAFAGIEQMVKERVGAKVIGFGTDSKTVQFKNTDKSIMQQVV 292

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR P+   L+ L + D   ILT+ ++ L+ QY+ L+  EG+ L FT
Sbjct: 293 PEDLMSFGLIPEFIGRLPILTALEELTEDDLVRILTEPKNALVKQYQALLALEGVALTFT 352

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
            +++ A+A +A+   +     GAR L++++E  + D+ F      +   V+I    V
Sbjct: 353 PEALKAMAHLAIERET-----GARGLRSIIEETMRDVMFDVPSRDDVNGVIITEGAV 404



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 10/196 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62
           +P+EIV  L+ Y+IGQ +AKR +A+A+ N ++R              EL   NI ++GPT
Sbjct: 64  TPQEIVDNLNSYVIGQDEAKRTLAVAVYNHYKRVNAMLTGDTGAEGVELQKSNIAMIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT I++ +A+L   PF   + T  TE GYVG +VE I+  L+  A   V  +     
Sbjct: 124 GSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVERAETGII 183

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A       I   + G+       ++    + +                 D +
Sbjct: 184 YIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQIDTT 243

Query: 178 NFDIPGGASVGILNLS 193
           N     G +   +   
Sbjct: 244 NILFIVGGAFAGIEQM 259


>gi|149181756|ref|ZP_01860247.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1]
 gi|148850497|gb|EDL64656.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1]
          Length = 424

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 130/307 (42%), Gaps = 60/307 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KVDDVELSKSNIAMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAE-RGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTSNILFICGGAFDGIEQIVKRRLGQKVIGFGSDPKTVNVDND 278

Query: 309 --------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR PV   L  L++     ILT  ++ L+ QY+++++ 
Sbjct: 279 KSLLAKVVPEDLLKFGLIPEFIGRLPVISSLTPLDEDALVEILTKPKNALVKQYQKMLEL 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           + + L+F ED++  +A+ A+   +     GAR L++++E ++ ++ F     ++ K  +I
Sbjct: 339 DQVELEFEEDALREIANKAIERKT-----GARGLRSIIESIMLEVMFDLPSREDIKKCII 393

Query: 415 DAEYVRL 421
               V  
Sbjct: 394 TPGTVTD 400



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPKEIREILDEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   D SN   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNILF 242

Query: 181 IPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  GI  +      + +         ++V      L +   + L+
Sbjct: 243 ICGGAFDGIEQIVKRRLGQKVIGFGSDPKTVNVDNDKSLLAKVVPEDLL 291


>gi|311069315|ref|YP_003974238.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           atrophaeus 1942]
 gi|310869832|gb|ADP33307.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus
           atrophaeus 1942]
          Length = 420

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 59/304 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KVDDVELSKSNISMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKE 278

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV   L+ L+++    ILT  ++ L+ QYK++++ +
Sbjct: 279 ELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            + L+F ED++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI 
Sbjct: 339 DVELEFEEDALAEIAKKAIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVIT 393

Query: 416 AEYV 419
              V
Sbjct: 394 GATV 397



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R    + + D EL   NI ++GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 243 ICGGAFDGIEQI 254


>gi|260583669|ref|ZP_05851417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella elegans ATCC 700633]
 gi|260158295|gb|EEW93363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella elegans ATCC 700633]
          Length = 412

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 58/305 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +E        SN  + G    G   L++  ++++          ++ +    +  D  + 
Sbjct: 98  VEDDGVELQKSNICLIGPTGSGKTYLAQSLARLLNVPFAIADATTLTEAG-YVGEDVENI 156

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS-- 282
           L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 157 LLKLLQATDYDVERAQK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIA 215

Query: 283 SVSTKYG---------SINTDHILFIASGAF----------------------------- 304
           SV  + G          I+T  ILFI  GAF                             
Sbjct: 216 SVPPQGGRKHPQQELIQIDTTDILFIVGGAFDGIETIVKERLGAKVIGFGSSNKNFSEHE 275

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
               +  P DL     +PE  GR P+   L+ L + D   ILT+ ++ L+ QY++L   +
Sbjct: 276 SLMQMIIPEDLQKFGLIPEFIGRLPIIAALEKLEQKDLVSILTEPKNALVKQYQKLFLMD 335

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            + L+F+++++DA+A  A+   +     GAR L++++E V+ D+ F      E   V++ 
Sbjct: 336 EVELEFSQEALDAIAAKAIERKT-----GARGLRSIIESVMMDLMFEIPSRDEVSKVIVT 390

Query: 416 AEYVR 420
            E V 
Sbjct: 391 KEVVE 395



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 14/290 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ++AK+A+A+A+ N ++R      D   EL   NI L+GPTG GK
Sbjct: 61  KPQEIREILNDYVIGQENAKKALAVAVYNHYKRINHLVEDDGVELQKSNICLIGPTGSGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+      V  +++     DE
Sbjct: 121 TYLAQSLARLLNVPFAIADATTLTEAGYVGEDVENILLKLLQATDYDVERAQKGIIYIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D ++   
Sbjct: 181 IDKIARKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDTTDILF 240

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD-RLIDMDTVHRDSIQM 240
             G +   +         +   R     +            ES  ++I  + + +  +  
Sbjct: 241 IVGGAFDGIE-------TIVKERLGAKVIGFGSSNKNFSEHESLMQMIIPEDLQKFGLIP 293

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
                +  +   +K+  +D  + +   +  + +    L     V  ++  
Sbjct: 294 EFIGRLPIIAALEKLEQKDLVSILTEPKNALVKQYQKLFLMDEVELEFSQ 343


>gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
          Length = 432

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMLGPTGSGKTLLAQTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLKIIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  + YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 171 DIERAQ-YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 230 PHQEFIQIDTTNILFICGGAFEGLEKIIATRKDQKSIGFGADVRSAKEHNVGELLREVMP 289

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV V L +L++     IL + +++L+ QY++L + +G+ LDF +
Sbjct: 290 EDFIKFGLIPEFIGRVPVVVSLNALDEEALIRILQEPKNSLVKQYRKLFELDGVELDFQK 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           D++  +A+ ++   +     GAR L+++ME  + D+ +    D   +  VI  E V 
Sbjct: 350 DALKLIAEKSLERKT-----GARGLRSIMESTMMDLMYQVPSDHTIQKCVITKEAVE 401



 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EI + LD Y+IGQ +AK+A+++A+ N ++R   P  L  EL   NIL++GPTG GK
Sbjct: 65  MTPQEIHNFLDEYVIGQDEAKKALSVAVYNHYKRVMAPKSLDVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA+L   PF   + T  TE GYVG +VE I+  ++  A   +  ++      DE
Sbjct: 125 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +                   D +N   
Sbjct: 185 IDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 244

Query: 181 IPGGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           I GGA  G+  +     +  S   G+  +     +V +   E+M ++  + 
Sbjct: 245 ICGGAFEGLEKIIATRKDQKSIGFGADVRSAKEHNVGELLREVMPEDFIKF 295


>gi|322517186|ref|ZP_08070069.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322124245|gb|EFX95761.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 408

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 145/363 (39%), Gaps = 67/363 (18%)

Query: 115 RESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L         A            +    ++   D +
Sbjct: 46  REEMAEEVLADLAETPKPKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREDND 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VDLQKSNILMI---GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F +D+++A+A  A+   +     GAR L++++E V+ D+ F     ++ T V I  E
Sbjct: 341 ELEFDQDALEAIASKAIERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKE 395

Query: 418 YVR 420
            V 
Sbjct: 396 AVD 398



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L     P+E++  L+ Y++GQ  AKRA+++A+ N ++R        D   +L   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREDNDVDLQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +      IE    S      
Sbjct: 177 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI----IEGTVASVPPQGG 225

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  +  ++   +   V G+    +  +  +     +   ++++ ID D+ +   I 
Sbjct: 226 RKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIV 285

Query: 240 MVENYGIVFLDEF 252
             +      + EF
Sbjct: 286 AEDIQKFGLIPEF 298


>gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           mossii DSM 22836]
          Length = 411

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 71/328 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++  G+  D EI+          SN  + G    G   L+   +K++          
Sbjct: 92  HYKRILQGKEDDIEIE---------KSNIIMVGPTGTGKTLLARTIAKLLHVPFAIVDAT 142

Query: 211 SVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
            + +        ES   RL+        + +     GIVF+DE DKI  +     I   V
Sbjct: 143 VLTEAGYVGEDIESILTRLLQASDYDVAAAER----GIVFIDEIDKIARKSDNPSITRDV 198

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA------------ 303
           S EGVQ+ LL L+EGS V+            K  +++T +ILF+  GA            
Sbjct: 199 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAVDTKNILFVCGGAFDGIERKIAQRL 258

Query: 304 --------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                         +   L+PEI GR P+  +L +L++S  R I
Sbjct: 259 NTMVVGYASSKNNAQVDRNNLLQYVAPQDLKSFGLIPEIIGRLPILTYLDALDRSALRRI 318

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L K +G+ L F +D  + + D AV        +GAR L++++E ++
Sbjct: 319 LTEPKNSIIKQYVKLFKMDGVDLTFEDDVYEYIVDKAVEYK-----LGARGLRSIVETIM 373

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D  F+    ++  + +  EY    + +
Sbjct: 374 MDAMFNIPSTKQAQLHVTKEYAVEQLEN 401



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 5/188 (2%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I   LD YIIGQ++AKR +++A+ N ++R     +   E+   NI++VGPTG GKT 
Sbjct: 64  PKKIKEYLDGYIIGQENAKRYLSVAVYNHYKRILQGKEDDIEIEKSNIIMVGPTGTGKTL 123

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123
           ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  +   V  + R     DE+ 
Sbjct: 124 LARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQASDYDVAAAERGIVFIDEID 183

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           + A  +    I   + G+       ++    + +          +    + D  N     
Sbjct: 184 KIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAVDTKNILFVC 243

Query: 184 GASVGILN 191
           G +   + 
Sbjct: 244 GGAFDGIE 251


>gi|259503088|ref|ZP_05745990.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
 gi|259168954|gb|EEW53449.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
          Length = 416

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 60/317 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  +  +  E  DT    SN  + G    G   L++  ++++          ++ +    
Sbjct: 94  KRVNAMMTGENNDTELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + ++ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENIILKLLQAADFDVERAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF----HVSR------------- 308
            ++EG+  +            ++  ++T +ILFI  GAF    ++ +             
Sbjct: 212 KILEGTVANVPPQGGRKHPQQEFIQVDTSNILFIVGGAFDGIENIVKERIGEKTIGFGTS 271

Query: 309 -----------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                            P DL     +PE  GR PV   L+ L++ D   ILT+ ++ L+
Sbjct: 272 SSARDNITEKNILQHVIPEDLLKFGLIPEFIGRLPVMTALQKLDEQDLIRILTEPKNALV 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+EL+K +G  L FT+ ++ A+A++A+  N+     GAR L++++E V++D+ F    
Sbjct: 332 KQYQELIKLDGSELSFTDGALRAMAELAIKRNT-----GARGLRSIIEEVMQDVMFDLPS 386

Query: 407 LQEK-TVVIDAEYVRLH 422
             +   VVI    V  H
Sbjct: 387 RADVAKVVIGKRCVTDH 403



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENNDTELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVERAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D SN 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQVDTSNI 242

Query: 180 -DIPGGASVGILNL 192
             I GGA  GI N+
Sbjct: 243 LFIVGGAFDGIENI 256


>gi|301060526|ref|ZP_07201366.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
 gi|300445369|gb|EFK09294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta
           proteobacterium NaphS2]
          Length = 415

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +++     + SN  + G    G   L++  ++++          ++ +    +  D  + 
Sbjct: 100 VDMEGVEIEKSNILLIGPTGSGKTLLAQTLARILKVPFTIADATTLTEAG-YVGEDVENI 158

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++  +    ++     GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 159 ILNLVQMADYDVESA-CKGIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTLA 217

Query: 285 STK-----------YGSINTDHILFIASGAFH---------------------------- 305
           +             +  ++T +ILFI  G F+                            
Sbjct: 218 NVPPKGGRKHPQQDFVKVDTSNILFICGGTFNGLDRIIRSRIGSKLMGFEADIHGKGDVD 277

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                 + +P DL+     PE  GR P+   L  L+      ILT+ ++ L  QYK+L +
Sbjct: 278 INEIMGLVQPEDLIKFGLIPEFIGRIPIVATLNELSLEALVRILTEPKNALTKQYKKLFE 337

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVV 413
            E + L FT+  ++A+A+ A+   S     GAR L+ ++E ++ +I +    + + +  V
Sbjct: 338 LEDVELKFTDGVLNAVAEAALKRKS-----GARGLRAILETLMLEIMYDIPSIPEIRECV 392

Query: 414 IDAEYVRL 421
           I+ E V  
Sbjct: 393 INEEVVTK 400



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVG 65
             P EI   LD+Y+I Q  AK+ +++A+ N ++R     D+   E+   NILL+GPTG G
Sbjct: 62  LKPVEIKETLDQYVIEQDKAKKVLSVAVHNHYKRINTKVDMEGVEIEKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----RRD 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II +LV +A   V  +       D
Sbjct: 122 KTLLAQTLARILKVPFTIADATTLTEAGYVGEDVENIILNLVQMADYDVESACKGIVYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    L +          +      D SN  
Sbjct: 182 EIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTLANVPPKGGRKHPQQDFVKVDTSNIL 241

Query: 181 IPGGASVGILN---LSELFSKVMGSGRKKKIRMSV 212
              G +   L+    S + SK+MG       +  V
Sbjct: 242 FICGGTFNGLDRIIRSRIGSKLMGFEADIHGKGDV 276


>gi|298480170|ref|ZP_06998368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D22]
 gi|298273451|gb|EFI15014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. D22]
          Length = 414

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 137/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L+++  R I
Sbjct: 263 NTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y ++ +  
Sbjct: 378 MDVMFEIPSEDKKEYKVTLDYAKMQLEK 405



 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|148284535|ref|YP_001248625.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi
           str. Boryong]
 gi|166214796|sp|A5CDP2|CLPX_ORITB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146739974|emb|CAM80014.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi
           str. Boryong]
          Length = 417

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 59/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K++          S+ +    +  D  + ++ +      
Sbjct: 107 SNVLLIGPTGCGKTLIAQTLAKIINVPFAMADATSLTEAG-YVGEDVENIILRLLQAADF 165

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
           +++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+            
Sbjct: 166 NVERAQK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKH 224

Query: 288 ----YGSINTDHILFIASGAF--------------------------------------- 304
               +  I+T ++LFI  GAF                                       
Sbjct: 225 PQQDFIQIDTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEA 284

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  LN+     ILT  ++ L+ QY++L + +G  L F E
Sbjct: 285 DDLTKFGLIPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEE 344

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++ A+A  A+   +     GAR L+ ++E VL D  F  S+L+   V+I A+ V+ ++ 
Sbjct: 345 EALIAIAQKALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVKNNLK 399

Query: 425 DFPS 428
               
Sbjct: 400 PIIK 403



 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
              P++I   ++ +++GQQ A + +A+A+  +  R +   +L D +   N+LL+GPTG G
Sbjct: 60  KLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFEHR-ELADLVAKSNVLLIGPTGCG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE II  L+  A   V  +++     D
Sbjct: 119 KTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQKGIIYID 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +            +      D +N  
Sbjct: 179 EIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQDFIQIDTTNML 238

Query: 180 DIPGGASVGILNLSE 194
            I GGA  GI  + E
Sbjct: 239 FICGGAFTGIEKIIE 253


>gi|118469529|ref|YP_888934.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           smegmatis str. MC2 155]
 gi|166214787|sp|A0R196|CLPX_MYCS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118170816|gb|ABK71712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium
           smegmatis str. MC2 155]
          Length = 426

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K+    IL++ ++ L+ QY  L + +G+ L+FTE
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKASLVKILSEPKNALVKQYVRLFEMDGVELEFTE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V+ ++
Sbjct: 353 EALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVIGQDSAKRTLAVAVYNHYKRIQAGEKSRDSRSEPVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|326330781|ref|ZP_08197082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
 gi|325951311|gb|EGD43350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Nocardioidaceae bacterium Broad-1]
          Length = 430

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 137/314 (43%), Gaps = 65/314 (20%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             KE  +EVA +     N  + G    G   L++  ++++          ++ +    + 
Sbjct: 111 HAKEEQVEVAKS-----NILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAG-YVG 164

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL +
Sbjct: 165 EDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKI 223

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG++ S            ++  I+T +ILF+  GAF                       
Sbjct: 224 IEGTTASVPPQGGRKHPHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVR 283

Query: 305 -----------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                       + RP DL     +PE  GR P+   ++ L+++    ILT+  + L+ Q
Sbjct: 284 GKAEKESEDLLKLVRPEDLTKFGLIPEFIGRLPLIASVEKLDQAALVKILTEPRNALVKQ 343

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y++L   +G+ L+FT+D++ A+AD A+   +     GAR L+ ++E VL  + +      
Sbjct: 344 YQKLFDLDGVDLEFTDDAVTAIADKALERGT-----GARGLRAIIEEVLLYVMYDVPSRG 398

Query: 409 E-KTVVIDAEYVRL 421
           +   V++  E V  
Sbjct: 399 DVGKVIVTREVVED 412



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 26/268 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPK 54
            P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R Q                + + E+   
Sbjct: 63  KPKEIFDFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPGGPQGPGKHAKEEQVEVAKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 123 NILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 182

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +++       DE+ + A       I   + G+       ++                   
Sbjct: 183 KKAETGIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQ 242

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RL 227
                D +N     G +   L        ++     KK      +   +  ++  D  +L
Sbjct: 243 EFIQIDTTNILFVVGGAFAGLEH------IIEQRVGKKTLGFTAEVRGKAEKESEDLLKL 296

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKI 255
           +  + + +  +       +  +   +K+
Sbjct: 297 VRPEDLTKFGLIPEFIGRLPLIASVEKL 324


>gi|322372510|ref|ZP_08047046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
 gi|321277552|gb|EFX54621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           sp. C150]
          Length = 408

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 67/371 (18%)

Query: 115 RESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L         A            +    ++   D E
Sbjct: 46  REEMAEEVLADLAETPKPKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNE 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VELQKSNILMI---GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F ++++ A+A  A+   +     GAR L++++E V+ D+ F     ++ T V I  E
Sbjct: 341 ELEFDQEALGAIASKAIERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKE 395

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 396 AVDGTASPIME 406



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L     P+E++  L+ Y++GQ  AKRA+A+A+ N ++R        D   EL   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNEVELQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +      IE    S      
Sbjct: 177 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI----IEGTVASVPPQGG 225

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  +  ++   +   V G+    +  +  +     +   ++++ ID D+ +   I 
Sbjct: 226 RKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIV 285

Query: 240 MVENYGIVFLDEF 252
             +      + EF
Sbjct: 286 AEDIQKFGLIPEF 298


>gi|28211966|ref|NP_782910.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium tetani
           E88]
 gi|46576541|sp|Q891J8|CLPX_CLOTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28204409|gb|AAO36847.1| ATP-dependent clp protease ATP-binding subunit clpX [Clostridium
           tetani E88]
          Length = 431

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 111 SNILLLGPTGSGKTLLAQTMAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  +NT +ILFI  GAF                                      P
Sbjct: 229 PHQEFIQLNTTNILFICGGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L++     ILT+ ++ L+ QYK+L + + + L+F E
Sbjct: 289 EDLLKFGLIPEFIGRLPITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKE 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           +++ A+A+ A+  ++     GAR L++++E +++DI F    D     V+I+ E V    
Sbjct: 349 EALKAIAEEAIRRST-----GARGLRSIIEEIMKDIMFEIPSDESISKVIINEETVSNKN 403

Query: 424 GDFPSET 430
            +     
Sbjct: 404 PELIEAE 410



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 11/236 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGP 61
           ++    P EI S LD Y+IGQ DAK+A+++A+ N ++R  L   +   EL   NILL+GP
Sbjct: 59  MSSLPKPSEIKSYLDDYVIGQDDAKKALSVAVYNHYKRINLNNVNDDVELQKSNILLLGP 118

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ +A+    PF   + T  TE GYVG +VE I+  L+  A   + ++ R  
Sbjct: 119 TGSGKTLLAQTMAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAERGI 178

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DE+ + A  +    I   + G+    +  ++    +                   + 
Sbjct: 179 IYIDEIDKIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPHQEFIQLNT 238

Query: 177 SNF-DIPGGASVGILNLSELFSK----VMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +N   I GGA  G+  L E  ++      G+  K K   +V +   ++M ++  + 
Sbjct: 239 TNILFICGGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMPEDLLKF 294


>gi|16332067|ref|NP_442795.1| ATP-dependent protease ATP-binding subunit ClpX [Synechocystis sp.
           PCC 6803]
 gi|6225172|sp|Q55510|CLPX_SYNY3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|1001376|dbj|BAA10866.1| ATP-dependent protease ATPase subunit [Synechocystis sp. PCC 6803]
          Length = 445

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +  V   
Sbjct: 135 SNILLVGPTGSGKTLLAQTLAKILEVPFAVADATTLTEAG-YVGEDVENILLRLLQVADL 193

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 194 DVEEAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 252

Query: 288 ----YGSINTDHILFIASGAF-----------------------------------HVSR 308
                  I+T +ILFI  GAF                                     + 
Sbjct: 253 PYQDCIQIDTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAE 312

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR PV   L  L++     ILT   + ++ QY+ L+  + + LDF 
Sbjct: 313 PDDLVKFGLIPEFIGRIPVMACLNPLDEDALIAILTQPRNAIVKQYQTLLGMDHVELDFQ 372

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
            D++ A+A  A    +     GAR L+ ++E ++ D+ +     ++ T  +I  E V   
Sbjct: 373 PDAVRAIATEAHRRKT-----GARALRGIVEELMLDVMYELPSREDLTHCLITREMVEKR 427



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMP 53
           + L     P  I   LD Y+IGQ +AK+ +++A+ N ++R  L    ++       EL  
Sbjct: 75  LTLEELPKPTAIKQYLDEYVIGQDEAKKVLSVAVYNHYKRLNLLERNQEIDPGDAVELQK 134

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILLVGPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   
Sbjct: 135 SNILLVGPTGSGKTLLAQTLAKILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLD 194

Query: 114 VRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           V E++R     DE+ + A  +    I   + G+       ++    + +           
Sbjct: 195 VEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPY 254

Query: 169 VADTSSDISNF-DIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                 D SN   I GGA VG+  + E     K MG  R  +     ++    L + E D
Sbjct: 255 QDCIQIDTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAEPD 314

Query: 226 RLI 228
            L+
Sbjct: 315 DLV 317


>gi|255321827|ref|ZP_05362977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           showae RM3277]
 gi|255300931|gb|EET80198.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           showae RM3277]
          Length = 412

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 61/321 (19%)

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           EI+ +   + S   N  + G    G   +++  +K +          S+ +    +  D 
Sbjct: 101 EIEDDTEISKS---NILLVGPTGSGKTLMAQTLAKFLDVPIAICDATSLTEAG-YVGEDV 156

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L  +       ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EG
Sbjct: 157 ENILTRLLQAADGDVKRAEQ-GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEG 215

Query: 282 SSVST-----------KYGSINTDHILFIASGAF-------------------HVSRPAD 311
           S V+            ++  I+T +ILF+  GAF                      R  D
Sbjct: 216 SLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKD 275

Query: 312 ------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE+ GR  V   L  + + D   ILT+ ++ ++ QY++L 
Sbjct: 276 DKENLLDALESDDLVHFGLIPELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLF 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
             +   L F ++++  +A +A+   +     GAR L+++ME V+ DI +   +L    VV
Sbjct: 336 AIDRANLKFDDEALKEVARLAIERKT-----GARGLRSIMEEVMTDIMYELPELAGYDVV 390

Query: 414 IDAEYVRLHIGDF-PSETDMY 433
           I  E V             + 
Sbjct: 391 ITKEVVSGKEKPIFVKNNKIS 411



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPT 62
            N +P+E+ + LD Y+IGQ  AK+  ++ + N ++R     ++ D  E+   NILLVGPT
Sbjct: 60  TNLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGEIEDDTEISKSNILLVGPT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ + +   
Sbjct: 120 GSGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVKRAEQGIV 179

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A ++    I   + G+       ++    L +                 D S
Sbjct: 180 FVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTS 239

Query: 178 NF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           N   + GGA  G+ ++ E  +   V+G G+ K+ +   +     L  D
Sbjct: 240 NILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDKENLLDALESD 287


>gi|323705912|ref|ZP_08117483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534710|gb|EGB24490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 424

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 109 SNILMLGPTGSGKTLLAQTLARMLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAEK-GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T +ILFI  GAF          + + +                        
Sbjct: 227 PHQEFIQIDTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEIQSKQEKKIGEILKNIMP 286

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+ V L SL+K     ILT+ ++ L  QY++L + +G+ L+F +
Sbjct: 287 EDLLKFGLIPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            ++  +A  A++  +     GAR L++++E ++ D+ +        +  +I  E V
Sbjct: 347 KALSVIAQKAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITEETV 397



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 19/259 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NIL++GPTG GK
Sbjct: 62  KPKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ +     DE
Sbjct: 122 TLLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEKGIVYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + A  +    I   + G+       ++    + +                 D +N   
Sbjct: 182 VDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQIDTTNILF 241

Query: 181 IPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVHR 235
           I GGA  GI  + E      S   GS  + K    + +    +M ++  +  +  + + R
Sbjct: 242 IVGGAFDGIEKIIESRIGKKSLGFGSEIQSKQEKKIGEILKNIMPEDLLKFGLIPEFIGR 301

Query: 236 DSIQMVENYGIVFLDEFDK 254
             I       +V LD  DK
Sbjct: 302 LPI-------VVTLDSLDK 313


>gi|313891580|ref|ZP_07825190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           microaerophilus UPII 345-E]
 gi|313120039|gb|EFR43221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           microaerophilus UPII 345-E]
          Length = 411

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 112 SNIIMLGPTGSGKTLLAQTLARFLDVPFAISDATTLTEAG-YVGEDVENILLRLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DLEKAE-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   ++T  ILFI  GAF                                  ++  P
Sbjct: 230 PNQEMIQLDTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L  L++     ILT  ++ LI QYK+L+K + + L+F E
Sbjct: 290 EDLLKFGLIPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEE 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +I A+A  A+  N+     GAR L+ ++E++++ + +   ++++ +  +I  + V
Sbjct: 350 KAIRAIAKKAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVV 400



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI   +D+Y+I Q++AK A+A+A+ N ++R +   D      EL   NI+++GPTG 
Sbjct: 63  TPVEIKKYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   + ++ R     
Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAADYDLEKAERGIVYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +                 D S  
Sbjct: 183 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQLDTSKI 242

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               G +   ++  +++  +K          +   +     L   E + L+
Sbjct: 243 LFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLL 293


>gi|86605508|ref|YP_474271.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           JA-3-3Ab]
 gi|123507236|sp|Q2JW64|CLPX_SYNJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|86554050|gb|ABC99008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus
           sp. JA-3-3Ab]
          Length = 448

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 63/328 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L      +     E+ +     SN  + G    G   L+E  ++++          
Sbjct: 110 HYKRLAAKANPNSLGAAELDEVELQKSNILVIGPTGSGKTLLAETLARMLDVPFAVADAT 169

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +  V    ++  +  GI+++DE DKI  +     I   VS 
Sbjct: 170 TLTEAG-YVGEDVENILLRLLQVADMDVEEAQ-RGIIYIDEIDKIARKSENPSITRDVSG 227

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  +                I+T +ILFI  GAF             
Sbjct: 228 EGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGK 287

Query: 305 ------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFR 335
                                       P DL+     PE  GR PV   L  L++    
Sbjct: 288 KSMGFIKPGEQLAVTREQRLADALKALEPEDLIKYGMIPEFIGRLPVVATLDPLDEKALE 347

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT  ++ ++ Q ++L++ +G+ L+F   +I A+A  A    +     GAR L+ ++E 
Sbjct: 348 AILTQPKNAILKQAQKLLRMDGVELEFEPAAISAIAKEAYRRKT-----GARALRAIVEE 402

Query: 396 VLEDISFSASD-LQEKTVVIDAEYVRLH 422
           ++ D+ +        K V I AE V   
Sbjct: 403 LMLDVMYEVPSRRDIKYVRITAEMVERR 430



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 22/241 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---------LRDELMPKNILL 58
            PREI+  LD+Y+IGQ+ AK+ +++A+ N ++R    A+            EL   NIL+
Sbjct: 81  KPREIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPNSLGAAELDEVELQKSNILV 140

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+ VA   V E++
Sbjct: 141 IGPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQ 200

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    + +                
Sbjct: 201 RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQ 260

Query: 174 SDISNF-DIPGGASVGILNLSELFSKVMGSGRKK-------KIRMSVQKCYPELMRDESD 225
            D SN   I GGA VG+  + E        G  K            +      L  ++  
Sbjct: 261 IDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLAVTREQRLADALKALEPEDLI 320

Query: 226 R 226
           +
Sbjct: 321 K 321


>gi|282856772|ref|ZP_06266033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pyramidobacter piscolens W5455]
 gi|282585395|gb|EFB90702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pyramidobacter piscolens W5455]
          Length = 432

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 146/356 (41%), Gaps = 72/356 (20%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +++++ AL         +E   + +   + + K I + V +    I      G   +   
Sbjct: 65  DDKMMTALKNPPRPKEIKEYLDEYVIGQDYAKKAISVAVYNHYKRIVTGFSGGEVELQKS 124

Query: 191 NL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--- 242
           NL     +     ++     KK+ +         + +      D++ V    +Q  +   
Sbjct: 125 NLLLLGPTGSGKTLLAQSLAKKLNVPFAISDATTLTEAGYVGEDVENVLVRLVQAADYDV 184

Query: 243 ---NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST----------- 286
                GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            
Sbjct: 185 AAAERGIVYIDEIDKIARKSESTSITRDVSGEGVQQALLKILEGTVSNIPPKGGRKHPQQ 244

Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPADL 312
           ++  +NT +ILFI  GAF                                      P DL
Sbjct: 245 EFIQVNTANILFICGGAFDGLENIVGRRVNKKVIGFDSDIRNGTAADRYDLLRQVEPEDL 304

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE+ GR P+ V L+SL+      +LT+ +++L+ QY++  + E + LD+  ++I
Sbjct: 305 VSFGFIPELVGRLPLLVPLQSLDADALVRVLTEPKNSLVRQYQKNFEMENVELDYQPEAI 364

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVVIDAEYV 419
            A+A+ A +  +     GAR L+ +ME ++ ++ +         Q K +VI  EYV
Sbjct: 365 RAIAEKAASKGT-----GARGLRAIMENLMLNLMYEVPSSNTKGQIKKIVITPEYV 415



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 8/228 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P+EI   LD Y+IGQ  AK+A+++A+ N ++R     +    EL   N+LL+GPTG GKT
Sbjct: 78  PKEIKEYLDEYVIGQDYAKKAISVAVYNHYKRIVTGFSGGEVELQKSNLLLLGPTGSGKT 137

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA+    PF   + T  TE GYVG +VE ++  LV  A   V  + R     DE+
Sbjct: 138 LLAQSLAKKLNVPFAISDATTLTEAGYVGEDVENVLVRLVQAADYDVAAAERGIVYIDEI 197

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +          +      + +N   I
Sbjct: 198 DKIARKSESTSITRDVSGEGVQQALLKILEGTVSNIPPKGGRKHPQQEFIQVNTANILFI 257

Query: 182 PGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            GGA  G+ N+     +K +          +    Y  L + E + L+
Sbjct: 258 CGGAFDGLENIVGRRVNKKVIGFDSDIRNGTAADRYDLLRQVEPEDLV 305


>gi|255284022|ref|ZP_05348577.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
 gi|255265475|gb|EET58680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella
           formatexigens DSM 14469]
          Length = 432

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMLGPTGSGKTYLAQTLARLLNVPFAIADATTLTEAG-YVGEDVENILLKIIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
            I+  + +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 171 DIERAQ-HGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 229

Query: 290 ------SINTDHILFIASGAFH----------------------------------VSRP 309
                  I+T  ILFI  GAF                                      P
Sbjct: 230 PQQELIQIDTTDILFICGGAFEGIDKIIETRMNTKTIGFGRTLSDKAQKNVGEVLKEVVP 289

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     ++PE  GR PV V L +L++     IL + ++++I QYK+L + +G+ LDF +
Sbjct: 290 QDFVKYGMIPEFIGRVPVVVSLDALDEEALVRILKEPKNSIIKQYKKLFELDGVKLDFED 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           D++DA+A +++   +     GAR L+ VMER ++++ ++   D       I  E V   
Sbjct: 350 DAVDAIAKLSMERKT-----GARGLRAVMERSMQELMYTIPSDETITECTITKELVEGK 403



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+A+A+A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 65  LKPEEIKAVLDDYVIGQDNAKKALAVAVYNHYKRILAGKDLGVELQKSNILMLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +  ++      DE
Sbjct: 125 TYLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQHGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +            +      D ++   
Sbjct: 185 IDKITRKSENASITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDTTDILF 244

Query: 181 IPGGASVGILNLSEL--------FSKVMGSGRKKKIRMSVQKCYP 217
           I GGA  GI  + E         F + +    +K +   +++  P
Sbjct: 245 ICGGAFEGIDKIIETRMNTKTIGFGRTLSDKAQKNVGEVLKEVVP 289


>gi|54297777|ref|YP_124146.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
 gi|61211415|sp|Q5X452|CLPX_LEGPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|53751562|emb|CAH12980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           pneumophila str. Paris]
          Length = 424

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 109 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 160

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 161 QKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAFH-----VSRPAD------------------- 311
                      ++  ++T +ILFI  GAF      +   +D                   
Sbjct: 221 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDE 280

Query: 312 -----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                            L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K
Sbjct: 281 ASKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFK 340

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            EG  L+F ++++ A+A  A+        +GAR L++++E +L D  +    L+    +V
Sbjct: 341 MEGSELEFRDEALIAIAKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKIV 395

Query: 414 IDAEYVR 420
           ID   V 
Sbjct: 396 IDESVVN 402



 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIVYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 185 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFI 244

Query: 183 GGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+         S +  S + K  + S  +    L + ESD LI
Sbjct: 245 CGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEASKVLGQLESDDLI 294


>gi|317124507|ref|YP_004098619.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Intrasporangium calvum DSM 43043]
 gi|315588595|gb|ADU47892.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Intrasporangium calvum DSM 43043]
          Length = 425

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 64/326 (19%)

Query: 151 FRKKLRDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             K+++ GE   +E D +++A +     N  + G    G   L++  +K++         
Sbjct: 92  HYKRIQAGEGPKREDDHVDIAKS-----NILLIGPTGSGKTYLAQTLAKMLNVPFAIADA 146

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVS 267
            ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS
Sbjct: 147 TALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKIARKSENPSITRDVS 204

Query: 268 REGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------ 304
            EGVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF            
Sbjct: 205 GEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRSG 264

Query: 305 ----------HVSR----------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILT 339
                     H ++          P DLL     PE  GR PV   L  L++     ILT
Sbjct: 265 RKGLGFGQPLHTAKDLGDSFADVMPEDLLKFGLIPEFIGRLPVLTTLGPLDQHALVNILT 324

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
              + L+ QY+++   +G+ L+FT+D+++A+AD A+   +     GAR L+ +ME VL  
Sbjct: 325 APRNALVKQYQKMFAIDGVELEFTDDALEAVADQALLRGT-----GARGLRAIMEEVLLP 379

Query: 400 ISFSASDLQE-KTVVIDAEYVRLHIG 424
           + F          VV+  E V  ++ 
Sbjct: 380 VMFDVPSDDGIARVVVSREVVLDNVN 405



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            PREI   L+ Y++GQ  AK+++A+A+ N ++R Q     + E     +   NILL+GPT
Sbjct: 63  KPREIFEFLEHYVVGQDAAKKSLAVAVYNHYKRIQAGEGPKREDDHVDIAKSNILLIGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++     
Sbjct: 123 GSGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV + A  +    I   + G+       ++                        D +
Sbjct: 183 YIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTT 242

Query: 178 N-FDIPGGASVGILNLSELFS--KVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTV 233
           N   I GGA  G+  + E  S  K +G G+       +   + ++M ++  +  +  + +
Sbjct: 243 NVLFIVGGAFSGLEKIIESRSGRKGLGFGQPLHTAKDLGDSFADVMPEDLLKFGLIPEFI 302

Query: 234 HR----DSIQMVENYGIVFL 249
            R     ++  ++ + +V +
Sbjct: 303 GRLPVLTTLGPLDQHALVNI 322


>gi|229821077|ref|YP_002882603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia
           cavernae DSM 12333]
 gi|259491252|sp|C5BXF8|CLPX_BEUC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229566990|gb|ACQ80841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia
           cavernae DSM 12333]
          Length = 424

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 57/298 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNVLLIGPTGTGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADF 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
             +  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DTKKAET-GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKIIEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF-------------------------------HVSRPADL 312
              ++  I+T ++LFI +GAF                                  RP DL
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLDDIIATRSRRRGVGFNAPLHDADEEDLFSQVRPEDL 292

Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   +  L++     ILT+ ++ L+ QY+ + + +G+ L+FT+D+I
Sbjct: 293 QKYGLIPEFIGRLPVVATVTKLDQEALVRILTEPKNALVRQYQRMFEIDGVELEFTDDAI 352

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           +++AD A+   +     GAR L+ ++E VL  + F      + + VVI  E V  ++ 
Sbjct: 353 ESVADQALLRGT-----GARGLRAILEEVLMPVMFDVPGRDDVERVVITREVVLENVN 405



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 11/137 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGPT 62
           P+EI + L++YIIGQ  AK+++++A+ N ++R Q         +   E+   N+LL+GPT
Sbjct: 64  PKEIFAHLEQYIIGQDSAKKSLSVAVYNHYKRIQARESGTGLGEDGVEIAKSNVLLIGPT 123

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A    +++     
Sbjct: 124 GTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDTKKAETGII 183

Query: 119 -RDEVREQASINAEERI 134
             DEV + A       I
Sbjct: 184 YIDEVDKIARKAENPSI 200


>gi|221310762|ref|ZP_03592609.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221315087|ref|ZP_03596892.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221320006|ref|ZP_03601300.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221324288|ref|ZP_03605582.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767648|ref|NP_390700.2| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|321312354|ref|YP_004204641.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           BSn5]
 gi|251757482|sp|P50866|CLPX_BACSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|225185276|emb|CAB14782.2| protein unfolding ATPase required for presentation of proteins to
           proteases [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485237|dbj|BAI86312.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018628|gb|ADV93614.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis
           BSn5]
          Length = 420

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 59/304 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++  I+T +ILFI  GAF                              
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE 278

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ +
Sbjct: 279 DLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELD 338

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            + L+F E+++  +A  A+   +     GAR L++++E ++ D+ F      + +  VI 
Sbjct: 339 NVELEFEEEALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393

Query: 416 AEYV 419
              V
Sbjct: 394 GATV 397



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 243 ICGGAFDGIEQI 254


>gi|187776851|ref|ZP_02993324.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC
           15579]
 gi|187775510|gb|EDU39312.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC
           15579]
          Length = 429

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIERAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F +
Sbjct: 287 GDLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLHI 423
           +++  +AD A+N N+     GAR L+ ++E ++ +I F     +    V+++ + ++   
Sbjct: 347 EALKGIADEAINRNT-----GARGLRAIIEDMMREIMFDIPSQENISKVIVNEDCIKTRK 401

Query: 424 GDFPSET 430
            +     
Sbjct: 402 PELIEAE 408



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 128/297 (43%), Gaps = 12/297 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+
Sbjct: 55  VDLTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + +
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +N   I GGA  G+  + E  ++    G   +I+   +K   +L++D     I    +
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKD-----IMPGDL 289

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +  +       +  +   DK+        +   +  + +    L E   V  ++  
Sbjct: 290 LKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346


>gi|329121862|ref|ZP_08250477.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
           micraerophilus DSM 19965]
 gi|327467800|gb|EGF13292.1| ATP-dependent Clp protease ATP-binding subunit [Dialister
           micraerophilus DSM 19965]
          Length = 411

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 112 SNIIMLGPTGSGKTLLAQTLARFLDVPFAISDATTLTEAG-YVGEDVENILLRLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DLEKAE-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   ++T  ILFI  GAF                                  ++  P
Sbjct: 230 PNQEMIQLDTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L  L++     ILT  ++ LI QYK+L+K + + L+F E
Sbjct: 290 EDLLKFGLIPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEE 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +I A+A  A+  N+     GAR L+ ++E++++ + +   ++++ +  +I  + V
Sbjct: 350 KAIRAIAKKAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVV 400



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
           +P EI   +D+Y+I Q++AK A+A+A+ N ++R +   D      EL   NI+++GPTG 
Sbjct: 63  TPVEIKEYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   + ++ R     
Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAADYDLEKAERGIVYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +                 D S  
Sbjct: 183 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQLDTSKI 242

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               G +   ++  +++  +K          +   +     L   E + L+
Sbjct: 243 LFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLL 293


>gi|319900083|ref|YP_004159811.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           helcogenes P 36-108]
 gi|319415114|gb|ADV42225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           helcogenes P 36-108]
          Length = 414

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 66/326 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   E  D  ++IE        SN  + G    G   L+   +K++          
Sbjct: 95  HYKRLLQKESGDD-VEIEK-------SNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   VS 
Sbjct: 147 VLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL L+EG+ V+            K   +NT +ILFI  GAF             
Sbjct: 205 EGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNT 264

Query: 305 HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           HV                          +   L+PEI GR PV  +L  L++   R ILT
Sbjct: 265 HVVGYGAVRNTSVIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRMALRAILT 324

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++++I QY +L + + + L F +   + + D A+        +GAR L++++E ++ D
Sbjct: 325 EPKNSIIKQYIKLFEMDNVKLTFDDAVFEYIVDKAIEYK-----LGARGLRSIVETIMMD 379

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGD 425
           + F      +   V+  +Y +  +  
Sbjct: 380 VMFEIPSEHKDNFVVTLDYAKRQLEK 405



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI + LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKESGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|167769422|ref|ZP_02441475.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
 gi|167668390|gb|EDS12520.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM
           17241]
          Length = 465

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 60/373 (16%)

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           VE     L D A    R  +  +  +Q ++     I + L         R      +   
Sbjct: 67  VELCQSVLDDDAPPAPRARQNRQ-EQQIAVLKPHEIKEKLDEYVIGQE-RAKIALSVAVY 124

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
               +    +V D     +N  + G   VG   L++  ++++          ++ +    
Sbjct: 125 NHYKRIYFGDVGDVELSKTNVLLLGPTGVGKTLLAQTLARMLNVPFAIADATTLTEAG-Y 183

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 184 VGEDVENILLRLLQAADYDVERAQK-GIIYIDEIDKISRKSENPSITRDVSGEGVQQALL 242

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSRPAD--------- 311
            ++EG+  +            ++  I+T  ILFI  GAF      + R  D         
Sbjct: 243 KILEGTVANVPPQGGRKHPQQEFIQIDTKDILFICGGAFEGIDKIIERRTDKSSLGFSST 302

Query: 312 -----------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                                  L+PE+ GR PV   L++L++     ILT+ +++L+ Q
Sbjct: 303 LKNVKARDRLVQQVIPQDLVKFGLIPELVGRTPVLTALEALDRDALVRILTEPKNSLVRQ 362

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-L 407
           YK+L   + + L F + +++A+AD A+   +     GAR L+ ++E  L  + +      
Sbjct: 363 YKQLFSLDNVELTFEDGALEAIADKAIERKT-----GARGLRAILEETLGPLMYDTPSEY 417

Query: 408 QEKTVVIDAEYVR 420
              +V I    V 
Sbjct: 418 TIASVKITKGCVE 430



 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI  +LD Y+IGQ+ AK A+++A+ N ++R         EL   N+LL+GPTGVGK
Sbjct: 96  LKPHEIKEKLDEYVIGQERAKIALSVAVYNHYKRIYFGDVGDVELSKTNVLLLGPTGVGK 155

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++     DE
Sbjct: 156 TLLAQTLARMLNVPFAIADATTLTEAGYVGEDVENILLRLLQAADYDVERAQKGIIYIDE 215

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    + +          +      D  +   
Sbjct: 216 IDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQIDTKDILF 275

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA  GI  + E   +   S       +   K    L++ 
Sbjct: 276 ICGGAFEGIDKIIE--RRTDKSSLGFSSTLKNVKARDRLVQQ 315


>gi|189182914|ref|YP_001936699.1| ATP-dependent protease ATP-binding subunit ClpX [Orientia
           tsutsugamushi str. Ikeda]
 gi|238692227|sp|B3CQC6|CLPX_ORITI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189179685|dbj|BAG39465.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi str. Ikeda]
          Length = 417

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 128/304 (42%), Gaps = 59/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K++          S+ +    +  D  + ++ +      
Sbjct: 107 SNVLLIGPTGCGKTLIAQTLAKIINVPFAMADATSLTEAG-YVGEDVENIILRLLQAADF 165

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+            
Sbjct: 166 NVERAQK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKH 224

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------------- 304
              ++  I+T ++LFI  GAF                                       
Sbjct: 225 PQQEFIQIDTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEA 284

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L  LN+     ILT  ++ L+ QY++L + +G  L F E
Sbjct: 285 DDLTKFGLIPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEE 344

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           +++ A+A  A+   +     GAR L+ ++E VL D  F  S+L+   V+I A+ V+ ++ 
Sbjct: 345 EALVAIAQKALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVKNNLK 399

Query: 425 DFPS 428
               
Sbjct: 400 PIIK 403



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 7/195 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
              P++I   ++ +++GQQ A + +A+A+  +  R +   +L D +   N+LL+GPTG G
Sbjct: 60  KLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFEHR-ELADLVAKSNVLLIGPTGCG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE II  L+  A   V  +++     D
Sbjct: 119 KTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQKGIIYID 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +            +      D +N  
Sbjct: 179 EIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQEFIQIDTTNML 238

Query: 180 DIPGGASVGILNLSE 194
            I GGA  GI  + E
Sbjct: 239 FICGGAFTGIEKIIE 253


>gi|153955959|ref|YP_001396724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           kluyveri DSM 555]
 gi|189082490|sp|A5N2K7|CLPX_CLOK5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146348817|gb|EDK35353.1| ClpX [Clostridium kluyveri DSM 555]
          Length = 430

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 110 SNILLLGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 DIERAE-HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 228 PHQEFIQINTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L++L+++    IL + ++ L+ QYK+L + + + L+F +
Sbjct: 288 GDLLKFGLIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++A+AD A+  N+     GAR L+ ++E  ++D+ F     +E   V+I+ + V   +
Sbjct: 348 EALEAIADEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVIINKDAVSTKM 402

Query: 424 GDFPSETD 431
            +     +
Sbjct: 403 PELIEAEN 410



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           + +T    P EI + LD+Y+IGQ+D+K+++++A+ N ++R     +  D  EL   NILL
Sbjct: 55  IDMTSIPKPVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 115 LGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAE 174

Query: 119 -----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234

Query: 174 SDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            + +N   I GGA  GI ++ E  ++V   G   +I+    K   +L++ 
Sbjct: 235 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQ 284


>gi|165924017|ref|ZP_02219849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 334]
 gi|165916540|gb|EDR35144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 334]
          Length = 422

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 75/307 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +              D++ + + 
Sbjct: 109 SNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEA--------GYVGEDVENIIQK 160

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-- 286
            +Q           GI+++DE DKI  +         VS EGVQ+ LL L+EG+  S   
Sbjct: 161 LLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPP 220

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    +Y  ++T +ILFI  GAF                                 
Sbjct: 221 QGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREAS 280

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                + P DL+     PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + E
Sbjct: 281 KLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFE 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVI 414
           G+ +DF ED++ A+A  A+   +     GAR L++++E  L D+ +    +      VVI
Sbjct: 341 GVEIDFREDALKAIAKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVI 395

Query: 415 DAEYVRL 421
           D+  +  
Sbjct: 396 DSGVIDQ 402



 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI  +LD Y+IGQ+ AK+ +++A+ N ++R          E+   NILL+GPTG GK
Sbjct: 62  TPPEIHRKLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 122 TLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       +   + G+       ++    +            +      D SN   
Sbjct: 182 IDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILF 241

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      I+      S +  +   +      ++    + + E   LI
Sbjct: 242 ICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLI 292


>gi|29654073|ref|NP_819765.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           RSA 493]
 gi|153209304|ref|ZP_01947339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212212796|ref|YP_002303732.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           CbuG_Q212]
 gi|212219037|ref|YP_002305824.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           CbuK_Q154]
 gi|46576521|sp|Q83DJ1|CLPX_COXBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066653|sp|B6J8W3|CLPX_COXB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066654|sp|B6J0V9|CLPX_COXB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29541339|gb|AAO90279.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii RSA 493]
 gi|120575420|gb|EAX32044.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212011206|gb|ACJ18587.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212013299|gb|ACJ20679.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 422

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 75/307 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +              D++ + + 
Sbjct: 109 SNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEA--------GYVGEDVENIIQK 160

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-- 286
            +Q           GI+++DE DKI  +         VS EGVQ+ LL L+EG+  S   
Sbjct: 161 LLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPP 220

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    +Y  ++T +ILFI  GAF                                 
Sbjct: 221 QGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREAS 280

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                + P DL+     PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + E
Sbjct: 281 KLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFE 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVI 414
           G+ +DF ED++ A+A  A+   +     GAR L++++E  L D+ +    +      VVI
Sbjct: 341 GVEIDFREDALKAIAKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVI 395

Query: 415 DAEYVRL 421
           D+  +  
Sbjct: 396 DSGVIDQ 402



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R          E+   NILL+GPTG GK
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 122 TLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       +   + G+       ++    +            +      D SN   
Sbjct: 182 IDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILF 241

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      I+      S +  +   +      ++    + + E   LI
Sbjct: 242 ICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLI 292


>gi|83589393|ref|YP_429402.1| ATP-dependent protease ATP-binding subunit ClpX [Moorella
           thermoacetica ATCC 39073]
 gi|123524974|sp|Q2RL30|CLPX_MOOTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83572307|gb|ABC18859.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moorella
           thermoacetica ATCC 39073]
          Length = 419

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 60/314 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +++ D     SN  + G    G   L++  +K++          S+ +    +  D  + 
Sbjct: 100 MKMDDVELQKSNIIMLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAG-YVGEDVENI 158

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 159 LLKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA 217

Query: 285 ST-----------KYGSINTDHILFIASGAFH---------------------------- 305
           S            ++  ++T +ILFI  GAF                             
Sbjct: 218 SVPPQGGRKHPHQEFIQLDTTNILFICGGAFDGLDKIIKNRISQKTMGFGAEIRGKNDVQ 277

Query: 306 ------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL     +PE  GR PV V L +L+++    +LT+  + L+ QY++L +
Sbjct: 278 VGDILKQVLPVDLLKYGLIPEFVGRLPVIVTLDALDETALIRVLTEPRNALVKQYQKLFE 337

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVV 413
            +G+ L+F ED++  +A  A+   +     GAR L+ ++E ++ D+ +           +
Sbjct: 338 MDGVTLEFKEDALVTIAREAIKRET-----GARGLRAILEEIMLDVMYEIPSRNNISKCI 392

Query: 414 IDAEYVRLHIGDFP 427
           I  + V        
Sbjct: 393 ITKDVVLRKEEPLL 406



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +++     P+EI   LD+Y+I Q  AK+A+A+A+ N ++R  L   + D EL   NI+++
Sbjct: 56  LEMGELPKPKEIREILDQYVISQDQAKKALAVAVYNHYKRINLGMKMDDVELQKSNIIML 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 116 GPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 235

Query: 175 DISNFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQ 213
           D +N     G +   L+    + +  K MG G + + +  VQ
Sbjct: 236 DTTNILFICGGAFDGLDKIIKNRISQKTMGFGAEIRGKNDVQ 277


>gi|116627469|ref|YP_820088.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
 gi|122267933|sp|Q03LN0|CLPX_STRTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116100746|gb|ABJ65892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           thermophilus LMD-9]
          Length = 408

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 147/371 (39%), Gaps = 67/371 (18%)

Query: 115 RESRRDEV-REQASINAEERILDALVGKTATSNTREV-----FRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L       +  +           +    ++   D +
Sbjct: 46  REETAEEVLADLAETPKPKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDND 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VDLQKSNILMI---GPTGSGKTYLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MKEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F +D+++A+A  A+   +     GAR L++++E V+ D+ F    L++ T V I  E
Sbjct: 341 ELEFDQDALEAIASKAIERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKE 395

Query: 418 YVRLHIGDFPS 428
            V         
Sbjct: 396 AVDGKAAPVLE 406



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 11/236 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L     P+E++  L+ Y++GQ   KRA+A+A+ N ++R        D   +L   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +                   
Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236

Query: 175 DISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D  N   I GGA  GI ++    L  K++G G+  K          E++ ++  + 
Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKF 292


>gi|170761592|ref|YP_001788550.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum A3 str. Loch Maree]
 gi|238688794|sp|B1L1D6|CLPX_CLOBM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169408581|gb|ACA56992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 429

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L  L++     ILT+ ++ L+ QYK+L + + + L+F +
Sbjct: 287 GDLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRLHI 423
           +++  +AD A+N N+     GAR L+ ++E ++ +I F     +    V+++ + ++   
Sbjct: 347 EALKGIADEAINRNT-----GARGLRAIIEDMMREIMFDIPSQENIGKVIVNEDCIKTKK 401

Query: 424 GDFPSET 430
            +     
Sbjct: 402 PELIEAE 408



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 12/297 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + LT    P EI + LD+Y+IGQ+DAK+++++A+ N ++R     +  D EL   NILL+
Sbjct: 55  VDLTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAEK 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           + +N   I GGA  G+  + E  ++    G   +I+   +K   +L++D     I    +
Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKD-----IMPGDL 289

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +  +       +  +   DK+        +   +  + +    L E   V  ++  
Sbjct: 290 LKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQ 346


>gi|300214644|gb|ADJ79060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus
           salivarius CECT 5713]
          Length = 258

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 96/256 (37%), Positives = 149/256 (58%), Gaps = 39/256 (15%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + +PR+IV+ELD+Y+IGQ  AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVG
Sbjct: 5   DKTPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVG 64

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RRLA++  APF+KVE TKFTE+GYVGR+VE + RDLV+VA  + +     +VR Q
Sbjct: 65  KTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQ 124

Query: 126 ASINAEERILDALVGKTATS-----------------------------------NTREV 150
           A+  A +R++  +V                                         N R  
Sbjct: 125 AAQQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLS 184

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             ++L+ G + + E+ I+V D S+  +N    G      ++LS L    M   +K +  M
Sbjct: 185 VAEQLKRGLLENNEVTIQVDDPSTQFNNQS--GMLGQMGIDLSSL--SSMMPTKKVERTM 240

Query: 211 SVQKCYPELMRDESDR 226
           +V +    L+++ES++
Sbjct: 241 TVAEAREILIKEESEK 256


>gi|255658240|ref|ZP_05403649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
 gi|260849550|gb|EEX69557.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella
           multacida DSM 20544]
          Length = 436

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 128/305 (41%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMIGPTGSGKTLLAQSLARILNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 171 DVEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFHVSRP---------------------------------- 309
              +   I+T +ILFI  GAF                                       
Sbjct: 230 PHQELIQIDTTNILFICGGAFDGIEKIIESRLGQKQMGFGAPIKSKRQRNIGDTLRKVLP 289

Query: 310 -----ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                + L+PE  GR PV V L +L++     ILT  ++ L+ QY++L++ +G+ L F +
Sbjct: 290 EDLLKSGLIPEFIGRLPVVVTLDALDEEALVNILTKPKNALVKQYQKLLELDGVKLTFDD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++  +A  A+   +     GAR L++++E ++ ++ +    ++  T   +  + +    
Sbjct: 350 DALRQIAKEALKRKT-----GARGLRSIIEGIMRNVMYDVPSIEGVTACRVTKDVITSKK 404

Query: 424 GDFPS 428
               +
Sbjct: 405 EPILT 409



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNIL 57
           ++L     P++I + LD+Y+IGQ +AK+ +++A+ N ++R  +         EL   NIL
Sbjct: 56  VELKDVPKPKDIRAILDQYVIGQDEAKKTLSVAVYNHYKRINMGQGKPGEDVELSKSNIL 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++
Sbjct: 116 MIGPTGSGKTLLAQSLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVEKA 175

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            R     DE+ + A  +    I   + G+       ++                      
Sbjct: 176 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQELI 235

Query: 173 SSDISNF-DIPGGASVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
             D +N   I GGA  GI  + E          G+  K K + ++     +++ ++  +
Sbjct: 236 QIDTTNILFICGGAFDGIEKIIESRLGQKQMGFGAPIKSKRQRNIGDTLRKVLPEDLLK 294


>gi|329894938|ref|ZP_08270737.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC3088]
 gi|328922667|gb|EGG30002.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma
           proteobacterium IMCC3088]
          Length = 430

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 128/316 (40%), Gaps = 79/316 (25%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR G+ S   +++         SN  + G    G   L+E  ++++          
Sbjct: 98  HYKRLRHGQSSSDAVEL-------GKSNILLVGPTGSGKTLLAETLARLLDVPFTIADAT 150

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
           ++ +              D++ + +  +Q  +        GIV++DE DKI  +     I
Sbjct: 151 TLTEA--------GYVGEDVENIIQKLLQKCDYDVEKAQVGIVYIDEIDKISRKSDNPSI 202

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------ 305
              VS EGVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF       
Sbjct: 203 TRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVI 262

Query: 306 -----------------------------VSRPADL-----LPEIQGRFPVRVHLKSLNK 331
                                           P DL     +PE  GR PV   L+ L+ 
Sbjct: 263 TNRSAKGGIGFNAEVKGKEQKKEFGEILFDLEPEDLVHYGLIPEFVGRLPVIATLEELDV 322

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
                ILT+ ++ L  QYK L + EG+ +DF ED + A+A  A+   +     GAR L++
Sbjct: 323 EALVQILTEPKNALTKQYKRLFEMEGVEVDFREDGLQAIAKKAMERKT-----GARGLRS 377

Query: 392 VMERVLEDISFSASDL 407
           ++E VL D  +S    
Sbjct: 378 ILEAVLLDSMYSIPSR 393



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 10/231 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66
           P+EI + LD Y+IGQQ AK+ +++A+ N ++R +      D  EL   NILLVGPTG GK
Sbjct: 70  PKEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGQSSSDAVELGKSNILLVGPTGSGK 129

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 130 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQVGIVYIDE 189

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +            +      D SN   
Sbjct: 190 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILF 249

Query: 182 PGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
             G +   L+    +      +G   + K +   ++    L   E + L+ 
Sbjct: 250 ICGGAFAGLDKVITNRSAKGGIGFNAEVKGKEQKKEFGEILFDLEPEDLVH 300


>gi|163815486|ref|ZP_02206859.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759]
 gi|158449123|gb|EDP26118.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759]
          Length = 525

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 157/404 (38%), Gaps = 67/404 (16%)

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           L   PF  ++++KF     + ++ +   +   +         +      +     +E ++
Sbjct: 128 LTNMPFGNIDMSKFKAQNDIPKSQKVKKKAPKEKKKQEELSLKTIPAPHKIKAMLDEYVV 187

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
                K   S       K++    + D EI+          SN  + G    G   + + 
Sbjct: 188 GQEYAKKVISVAVYNHYKRVLTDTMDDIEIE---------KSNMLMVGPTGCGKTYIVKT 238

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            +K++          ++ +    +  D    L  +     + ++  E  GIVF+DE DKI
Sbjct: 239 IAKLLQVPLAITDATTLTEAG-YIGDDVESVLSKLLAAADNDVEKAE-RGIVFIDEIDKI 296

Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF 304
             + + N   VS E VQ+ LL L+EG+ V    GS           INT +ILFI  GAF
Sbjct: 297 AKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINTRNILFICGGAF 356

Query: 305 ---------HVSRPA------------------------------DLLPEIQGRFPVRVH 325
                     +S+ A                               ++PE  GR PV   
Sbjct: 357 PDLEDIIKRRISKQASMGFKAELKDKYDDEPNLLRQVTTEDLRDFGMIPEFLGRLPVVFT 416

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L+K  +  IL + ++ ++ QYK+L+  + + L F + + +A+A  AV   +     G
Sbjct: 417 LDALDKDMYIKILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIASEAVKRKT-----G 471

Query: 386 ARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPS 428
           AR L+ ++E+ + DI +    D     V I  +Y+R        
Sbjct: 472 ARALRAIIEKFMLDIMYQIPRDDTIGRVTITGDYIRGKGSPIIE 515



 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 16/263 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P +I + LD Y++GQ+ AK+ +++A+ N ++R         E+   N+L+VG
Sbjct: 167 LSLKTIPAPHKIKAMLDEYVVGQEYAKKVISVAVYNHYKRVLTDTMDDIEIEKSNMLMVG 226

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT I + +A+L   P    + T  TE GY+G +VE ++  L+  A N V ++ R 
Sbjct: 227 PTGCGKTYIVKTIAKLLQVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERG 286

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI-------EVADTS 173
            V     I+  ++I       +   +   V +  L+  E +D E+ +        V  T+
Sbjct: 287 IV----FIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTT 342

Query: 174 SDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  N     G +   L   +    SK    G K +++         L +  ++ L D  
Sbjct: 343 INTRNILFICGGAFPDLEDIIKRRISKQASMGFKAELKDKYDDEPNLLRQVTTEDLRDFG 402

Query: 232 TVHRDSIQMVENYGIVFLDEFDK 254
            +      +     +  LD  DK
Sbjct: 403 MIPE---FLGRLPVVFTLDALDK 422


>gi|302874446|ref|YP_003843079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
 gi|307690947|ref|ZP_07633393.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
 gi|302577303|gb|ADL51315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulovorans 743B]
          Length = 426

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 131/303 (43%), Gaps = 60/303 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGCGKTFLAQTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 DVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTANILFICGGAFDGIEKIIEKRTSKGSMGFGADITSKKEKNIGETLKELMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L+SL++     IL + ++ L+ QYK+L   +G+ LDF E
Sbjct: 287 GDLLKYGLIPEFVGRLPIVVTLQSLDEEALVKILYEPKNALVKQYKKLFAMDGVDLDFDE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
            ++ A+A  A+  ++     GAR L+ ++E +++DI F      + K V I  + ++   
Sbjct: 347 KALRAIAKEAIERST-----GARGLRAIIEDMMKDIMFEIPSKDDVKKVTILEDTIKTKT 401

Query: 424 GDF 426
            + 
Sbjct: 402 PEV 404



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI + LD+Y++GQ+ AK+++A+A+ N ++R     A+   EL   NILL+GPTG GK
Sbjct: 62  KPMEIKTHLDQYVVGQESAKKSLAVAVYNHYKRINSNIANDDVELQKSNILLLGPTGCGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 122 TFLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAEKGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + +N   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTANILF 241

Query: 181 IPGGASVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I GGA  GI  + E      S   G+    K   ++ +   ELM  +  +
Sbjct: 242 ICGGAFDGIEKIIEKRTSKGSMGFGADITSKKEKNIGETLKELMPGDLLK 291


>gi|253996689|ref|YP_003048753.1| ATP-dependent protease ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
 gi|253983368|gb|ACT48226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera
           mobilis JLW8]
          Length = 426

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 67/346 (19%)

Query: 133 RILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +ILD   +    A  N         +    ++     +  +     SN  + G    G  
Sbjct: 71  KILDQYVIGQTQAKKNLAVAVYNHYKRLGHNNLANGGQKDEVEIAKSNILLIGPTGSGKT 130

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDTVHRDSIQMVENYGIVF 248
            L++  ++++          ++ +        E    +L+       +  Q     GIV+
Sbjct: 131 LLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDTEKAQR----GIVY 186

Query: 249 LDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV-----------STKYGSINTDH 295
           +DE DKI  +     I   VS EGVQ+ LL L+EG+             + ++  ++T +
Sbjct: 187 IDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQLDTTN 246

Query: 296 ILFIASGAF-----------------------------------HVSRPADLL-----PE 315
           ILFI  GAF                                       P DL+     PE
Sbjct: 247 ILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKSKADVREVGAVLRDVEPEDLIKFGLIPE 306

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   L+SL+++    ILT+ ++ L  QY +L K EG+ L+F E ++  +A  A+
Sbjct: 307 FIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVDLEFRESALLLIAKKAL 366

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
              +     GAR L+++ME  L ++ +    L+    VVID   +R
Sbjct: 367 ERKT-----GARGLRSIMEHSLLEVMYELPSLKNLSKVVIDDGVIR 407



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 14/235 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGP 61
           +P+EI   LD+Y+IGQ  AK+ +A+A+ N ++R               E+   NILL+GP
Sbjct: 65  TPQEICKILDQYVIGQTQAKKNLAVAVYNHYKRLGHNNLANGGQKDEVEIAKSNILLIGP 124

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LARL   PF+  + T  TE GYVG +VE I++ L+        +++R  
Sbjct: 125 TGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDTEKAQRGI 184

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + +  +    I   + G+       ++    +                   D 
Sbjct: 185 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQLDT 244

Query: 177 SNF-DIPGGASVGILNLSELFS--KVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +N   I GGA  G+  +  L S    +G G + K +  V++    L   E + LI
Sbjct: 245 TNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKSKADVREVGAVLRDVEPEDLI 299


>gi|116492902|ref|YP_804637.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265634|sp|Q03F27|CLPX_PEDPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116103052|gb|ABJ68195.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pediococcus
           pentosaceus ATCC 25745]
          Length = 418

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 64/318 (20%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           +  E    E + E+  +     N  + G    G   L++  +K++          ++ + 
Sbjct: 99  KMAETKADEDEPELQKS-----NISLIGPTGSGKTFLAQSLAKILNVPFAIADATTLTEA 153

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 154 G-YVGEDVENILLKLLQNADYNVEAAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQ 211

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG+  +            ++  INT +ILFI  GAF                  
Sbjct: 212 ALLKILEGTIANVPPQGGRKHPQQEFIQINTTNILFIVGGAFDGIETIVKNRLGDKTIGF 271

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DL     +PE  GR P+   L+ L + D   ILT+ ++ 
Sbjct: 272 GTNASTTVEEDKSLMQQVIPEDLLNFGLIPEFIGRLPILSALEKLTEEDLVHILTEPKNA 331

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK L+  +G+ L FT  ++ A+A+ A++ N+     GAR L++++E V+ DI F  
Sbjct: 332 LVKQYKTLLGLDGVELKFTPQALHAIANQAISRNT-----GARGLRSIIENVMRDIMFEI 386

Query: 405 SDLQEK-TVVIDAEYVRL 421
               +   V ++ + V  
Sbjct: 387 PSRNDVAKVTVNKKTVIE 404



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-----LRDELMPKNI 56
           ++T   +P EIV  L++Y+IGQ++AK+ +++A+ N ++R    A+        EL   NI
Sbjct: 58  EITDVPTPAEIVDYLNQYVIGQEEAKKTLSVAVYNHYKRINKMAETKADEDEPELQKSNI 117

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 118 SLIGPTGSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYNVEA 177

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           + R     DE+ + A  +    I   + G+       ++    + +          +   
Sbjct: 178 AERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEF 237

Query: 172 TSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              + +N   I GGA  GI  + +        G       +V++    + +   + L++
Sbjct: 238 IQINTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTTVEEDKSLMQQVIPEDLLN 296


>gi|312863135|ref|ZP_07723373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
 gi|311100671|gb|EFQ58876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           vestibularis F0396]
          Length = 408

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 145/363 (39%), Gaps = 67/363 (18%)

Query: 115 RESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L         A            +    ++   + +
Sbjct: 46  REEMAEEVLADLAETPKPKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREEND 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VDLQKSNILMI---GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVRQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F +D+++A+A  A+   +     GAR L++++E V+ D+ F     ++ T V I  E
Sbjct: 341 ELEFDQDALEAIASKAIERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKE 395

Query: 418 YVR 420
            V 
Sbjct: 396 AVD 398



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L     P+E++  L+ Y++GQ  AKRA+++A+ N ++R        +   +L   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREENDVDLQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +      IE    S      
Sbjct: 177 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI----IEGTVASVPPQGG 225

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  +  ++   +   V G+    +  +  +     +   ++++ ID D+ +   I 
Sbjct: 226 RKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIV 285

Query: 240 MVENYGIVFLDEF 252
             +      + EF
Sbjct: 286 AEDIQKFGLIPEF 298


>gi|153006263|ref|YP_001380588.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029836|gb|ABS27604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. Fw109-5]
          Length = 412

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 130/324 (40%), Gaps = 60/324 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                  E  + + D     SN  + G    G   L++  +K++          ++ +  
Sbjct: 87  HNHYKRIESRVSIDDVELQKSNILLLGPTGSGKTLLAQTLAKILNVPFTIADATTLTEAG 146

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 147 -YVGEDVENIIVNLLQAADHDIERAQK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQA 204

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            ++  ++T +ILFI  GAF                   
Sbjct: 205 LLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFCGLEQIIERRSGGRSLGFG 264

Query: 305 ---------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                           +  P DLL     PE  GR PV   L+ L++     ILT   + 
Sbjct: 265 SDVTSKSEKNIGELLAMVEPDDLLKFGMIPEFVGRLPVITSLEELDEPALIEILTKPRNA 324

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK L++ +G+ L FT+ ++ A+A  A    +     GAR L+ ++E  + DI +  
Sbjct: 325 LVKQYKRLLEMDGVSLKFTDGALKAIARAATKNKA-----GARGLRAILESAMLDIMYDV 379

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFP 427
              +  + +VI  + +        
Sbjct: 380 PSRRNVREIVISEDVIDKKEAPLV 403



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y++GQ+ AK+ +A+A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 61  PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA++   PF   + T  TE GYVG +VE II +L+  A + +  +++     DE+
Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAADHDIERAQKGIVYIDEI 180

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +          +      D +N   I
Sbjct: 181 DKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQVDTTNILFI 240

Query: 182 PGGASVGILNLSE 194
            GGA  G+  + E
Sbjct: 241 CGGAFCGLEQIIE 253


>gi|189462224|ref|ZP_03011009.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
 gi|189431077|gb|EDV00062.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136]
          Length = 414

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 71/337 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQPSSKDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   +++  E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVEEAE-RGIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA------------ 303
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GA            
Sbjct: 203 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPVNTKNILFICGGAFDGIERKIAQRL 262

Query: 304 --------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                         +   L+PEI GR P+  +L  L+++  R I
Sbjct: 263 NTNVVGYGAAKEKVKIDRANLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  D + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGVKLEFQPEVFDYIVDKAVEYK-----LGARGLRSIVETIV 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
            D  F     + +T VI  +Y +  +     + ++  
Sbjct: 378 MDAMFEVPSHKVETFVITLDYAKEQMN----KANLSR 410



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I   LD+Y+IGQ DAKR +++A+ N ++R   P+   D E+   NI++VG TG GK
Sbjct: 66  KPKDIKDFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPSSKDDVEIEKSNIIMVGSTGTGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+ R     DE
Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAERGIVFIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       I   + G+       ++    + +          E      +  N   
Sbjct: 186 IDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPVNTKNILF 245

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
             G +   +                  +  V+     LM+
Sbjct: 246 ICGGAFDGIERKIAQRLNTNVVGYGAAKEKVKIDRANLMQ 285


>gi|134097948|ref|YP_001103609.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009142|ref|ZP_06567115.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910571|emb|CAM00684.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 427

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 137/322 (42%), Gaps = 65/322 (20%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
                  +E  +E+A +     N  + G    G   L++  +K++          ++ + 
Sbjct: 100 ERTTRESREESVELAKS-----NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSRPA--- 310
            LL ++EG++ S            ++  I+T ++LFI +GAF          V + +   
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIVEDRVGKHSVGF 272

Query: 311 ---------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                                       L+PE  GR P    + +L+K     ILT+  +
Sbjct: 273 GAELRSKTDLDNADHFADVMPEDLIKYGLIPEFIGRLPTVATVTNLDKPSLVQILTEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QYK L + + + L+FT+ +++A+AD A+   +     GAR L+ ++E VL  + + 
Sbjct: 333 ALIKQYKRLFEMDNVELEFTKTALEAIADQAILRGT-----GARGLRAILEEVLLPVMYD 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIG 424
                +   VVI  + VR ++ 
Sbjct: 388 IPSRSDVAKVVITEQTVRENVN 409



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 12/140 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMP 53
           +KL     P EI   LD+Y+IGQ  AKR +++A+ N ++R Q+         +   EL  
Sbjct: 56  VKLDELPKPAEIHEFLDQYVIGQDPAKRNLSVAVYNHYKRIQVGERTTRESREESVELAK 115

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   
Sbjct: 116 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYD 175

Query: 114 VRESR-----RDEVREQASI 128
           V+ +       DEV + A  
Sbjct: 176 VKRAETGIIYIDEVDKIARK 195


>gi|304316360|ref|YP_003851505.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777862|gb|ADL68421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 424

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 109 SNILMLGPTGSGKTLLAQTLARMLNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 168 DIEKAE-RGIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T +ILFI  GAF          + + +                        
Sbjct: 227 PHQEFIQIDTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEVQSKQEKKIGEILKNIMP 286

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+ V L SL+K     ILT+ ++ L  QY++L + +G+ L+F +
Sbjct: 287 EDLLKFGLIPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            ++  +A  A++  +     GAR L++++E ++ D+ +        +  +I  + V
Sbjct: 347 KALSVIAQKAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITEDTV 397



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 19/259 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ  AK+A+A+A+ N ++R        D EL   NIL++GPTG GK
Sbjct: 62  KPKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ R     DE
Sbjct: 122 TLLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAERGIVYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + A  +    I   + G+       ++    + +                 D +N   
Sbjct: 182 VDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQIDTTNILF 241

Query: 181 IPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVHR 235
           I GGA  GI  + E      S   GS  + K    + +    +M ++  +  +  + + R
Sbjct: 242 IVGGAFDGIEKIIESRIGKKSLGFGSEVQSKQEKKIGEILKNIMPEDLLKFGLIPEFIGR 301

Query: 236 DSIQMVENYGIVFLDEFDK 254
             I       +V LD  DK
Sbjct: 302 LPI-------VVTLDSLDK 313


>gi|227500203|ref|ZP_03930272.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
 gi|227217725|gb|EEI83029.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius
           ATCC 35098]
          Length = 404

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 59/314 (18%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
             I+  E D E+    S   N  + G    G   L++  ++ +          S+ +   
Sbjct: 93  KRINSNEEDSEIELQKS---NILMLGPTGSGKTLLAQTLARKLNVPFAIADATSLTEAG- 148

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D  + ++ +       I++ E  GI+++DE DKI  +     I   VS EGVQ+ L
Sbjct: 149 YVGEDVENIILKLVQAADYDIELAE-RGIIYVDEIDKITRKSENPSITRDVSGEGVQQAL 207

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------------- 304
           L L+EG+  +            +Y  ++T +ILFI  GAF                    
Sbjct: 208 LKLIEGTEANVPPQGGRKHPSQEYIQVDTTNILFILGGAFDGIEDIINRRLSEKTIGFGA 267

Query: 305 HVSRPA---------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            VS+ A                L+PE  GR P+ V L +L       IL + +++ + QY
Sbjct: 268 SVSKNAKASLKEVNTEDLLKYGLIPEFIGRVPIIVSLDALEIDSLVQILKEPKNSFVKQY 327

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L + +G+ L F +D++  +A  A +  +     GAR L+T+ME +L D+ F    + +
Sbjct: 328 QKLFELDGVKLTFEDDALYQIAKKAFDQKT-----GARGLRTIMENLLLDLMFEIPSIDD 382

Query: 410 -KTVVIDAEYVRLH 422
            + V++  E V   
Sbjct: 383 LEEVIVTKESVDDK 396



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 13/257 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R     +  + EL   NIL++GPTG GK
Sbjct: 62  TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSEIELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A   +  + R     DE
Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIELAERGIIYVDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++      +                 D +N   
Sbjct: 182 IDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQVDTTNILF 241

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +   +   ++ ++ +            +     L    ++ L+    +      + 
Sbjct: 242 ILGGAFDGIE--DIINRRLSEKTIGFGASVSKNAKASLKEVNTEDLLKYGLIPE---FIG 296

Query: 242 ENYGIVFLD--EFDKIV 256
               IV LD  E D +V
Sbjct: 297 RVPIIVSLDALEIDSLV 313


>gi|161830841|ref|YP_001596949.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           RSA 331]
 gi|189044132|sp|A9NDF9|CLPX_COXBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|161762708|gb|ABX78350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella
           burnetii RSA 331]
          Length = 422

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 75/307 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +              D++ + + 
Sbjct: 109 SNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEA--------GYVGEDVENIIQK 160

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-- 286
            +Q           GI+++DE DKI  +         VS EGVQ+ LL L+EG+  S   
Sbjct: 161 LLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPP 220

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    +Y  ++T +ILFI  GAF                                 
Sbjct: 221 QGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREAS 280

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                + P DL+     PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + E
Sbjct: 281 KLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFE 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVI 414
           G+ +DF ED+++A+A  A+   +     GAR L++++E  L D+ +    +      VVI
Sbjct: 341 GVEIDFREDALNAIAKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVI 395

Query: 415 DAEYVRL 421
           D+  +  
Sbjct: 396 DSGVIDQ 402



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R          E+   NILL+GPTG GK
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 122 TLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       +   + G+       ++    +            +      D SN   
Sbjct: 182 IDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILF 241

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      I+      S +  +   +      ++    + + E   LI
Sbjct: 242 ICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLI 292


>gi|219856301|ref|YP_002473423.1| hypothetical protein CKR_2958 [Clostridium kluyveri NBRC 12016]
 gi|254763842|sp|B9E684|CLPX_CLOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219570025|dbj|BAH08009.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 432

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 112 SNILLLGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E +GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 171 DIERAE-HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 230 PHQEFIQINTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L++L+++    IL + ++ L+ QYK+L + + + L+F +
Sbjct: 290 GDLLKFGLIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKD 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++A+AD A+  N+     GAR L+ ++E  ++D+ F     +E   V+I+ + V   +
Sbjct: 350 EALEAIADEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVIINKDAVSTKM 404

Query: 424 GDFPSETD 431
            +     +
Sbjct: 405 PELIEAEN 412



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58
           + +T    P EI + LD+Y+IGQ+D+K+++++A+ N ++R     +  D  EL   NILL
Sbjct: 57  IDMTSIPKPVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILL 116

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 117 LGPTGSGKTLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIERAE 176

Query: 119 -----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 DE+ + A  +    I   + G+       ++    +                  
Sbjct: 177 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 236

Query: 174 SDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            + +N   I GGA  GI ++ E  ++V   G   +I+    K   +L++ 
Sbjct: 237 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQ 286


>gi|154706445|ref|YP_001424147.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii
           Dugway 5J108-111]
 gi|189082494|sp|A9KDS7|CLPX_COXBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|154355731|gb|ABS77193.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella
           burnetii Dugway 5J108-111]
          Length = 422

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 75/307 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +              D++ + + 
Sbjct: 109 SNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEA--------GYVGEDVENIIQK 160

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-- 286
            +Q           GI+++DE DKI  +         VS EGVQ+ LL L+EG+  S   
Sbjct: 161 LLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPP 220

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    +Y  ++T +ILFI  GAF                                 
Sbjct: 221 QGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKIGIGFAAEVRPKEDFSREAS 280

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                + P DL+     PE  GR P+   L+ L++     ILT+ ++ L+ QY++L + E
Sbjct: 281 KLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFE 340

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVI 414
           G+ +DF ED++ A+A  A+   +     GAR L++++E  L D+ +    +      VVI
Sbjct: 341 GVEIDFREDALKAIAKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVI 395

Query: 415 DAEYVRL 421
           D+  +  
Sbjct: 396 DSGVIDQ 402



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R          E+   NILL+GPTG GK
Sbjct: 62  TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 122 TLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       +   + G+       ++    +            +      D SN   
Sbjct: 182 IDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILF 241

Query: 182 PGGASVG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +      I+        +  +   +      ++    + + E   LI
Sbjct: 242 ICGGAFADLHKIIQRRTDKIGIGFAAEVRPKEDFSREASKLIKQTEPGDLI 292


>gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|13878442|sp|Q9CGE6|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 411

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 58/297 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          S+ +    +  D  + L+ +      
Sbjct: 110 SNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YVGEDVENILLKLLQASDF 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 NIERAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF-------------------------------------HV 306
              +   I+T +ILFI  GAF                                       
Sbjct: 228 PNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAED 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F +++
Sbjct: 288 IQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E V+ DI F     +E   V+I+   V   
Sbjct: 348 LMAIARKAIERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGK 399



 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILL 58
           ++    +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A       EL   NILL
Sbjct: 55  EMLEVKTPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + 
Sbjct: 115 IGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAE 174

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 174 SDISNFDIPGGASVGILN 191
            D  N     G +   + 
Sbjct: 235 IDTKNILFIVGGAFDGIE 252


>gi|154298243|ref|XP_001549545.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10]
 gi|150858152|gb|EDN33344.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10]
          Length = 612

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 161/401 (40%), Gaps = 69/401 (17%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           R  + P+  R  +   N++L+GP+GVGKT I + LAR+   PF  V+ +  T+ GY+G +
Sbjct: 171 RPLEDPSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTD 230

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           +E  I  L+  + N +++           I  +E  +D L      ++ R+V  + ++ G
Sbjct: 231 IESSIERLLLASSNSIQKCET------GIIFFDE--IDKLAKPAVMTHGRDVSGEGVQQG 282

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
            +   E      +  SD +  +       G                        ++  P 
Sbjct: 283 LLKMIEGTTVTVNAKSDKNASNSNRSMDRGG-----------------------REASPP 319

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
              +         T+   +I  V     + L+   KI+++    G  +            
Sbjct: 320 ARSE-------QYTIDTSNILFVFAGAFIGLE---KIISQRLSTGSSIGFNSSLSSSSSS 369

Query: 279 VEGSSV---STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
              S+    + K   ++       A G         L+PE+ GR P+   L  L+     
Sbjct: 370 FFSSNPSKENQKDILVHATSTDLQAYG---------LIPELLGRIPITTSLSPLSLPQLV 420

Query: 336 LILTDTESNLILQYKELMKTE---GIILDFTEDSIDALADVAVN------------LNST 380
            ILT+  ++L+ QY  L +T    GIIL FT+ +++A+A  A+                 
Sbjct: 421 SILTEPRNSLVKQYTALFETYGSHGIILQFTKLALEAIASRALYGSSSPSSKENKGKGEK 480

Query: 381 VGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
              IGAR L+++ME VL++I F        + V++D  +V+
Sbjct: 481 GTGIGARGLRSIMENVLQEIMFIGPSSPNIRYVLVDEAFVK 521



 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN 55
            +P  + + LD++++GQ  AK+   +A+ N ++R +       E   + 
Sbjct: 73  LTPLSLKNHLDKFVVGQDRAKKVTCVAIYNHYQRVRELRRQEAEEQERR 121


>gi|300214432|gb|ADJ78848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           salivarius CECT 5713]
          Length = 408

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 59/303 (19%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ + 
Sbjct: 106 TELQKSNICLVGPTGSGKTFLAQNLARILNVPFAIADATTLTEAG-YVGEDVENILLKLL 164

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 165 QNADYDVERAQ-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 223

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T +ILFI  GAF                                  
Sbjct: 224 GGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQ 283

Query: 309 ---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P DL     +PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + + L
Sbjct: 284 QIIPEDLLKFGLIPEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSL 343

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            F +D++  +A +A+  N+     GAR L++++E  + DI F        K VVI  + V
Sbjct: 344 RFEDDAVKEIAHLAIERNT-----GARGLRSIVEATMRDIMFDIPSEDNIKEVVITKDTV 398

Query: 420 RLH 422
              
Sbjct: 399 DGK 401



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R        D  EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R     D
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +      D +N  
Sbjct: 183 EIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNIL 242

Query: 181 IPGGASVGILNLS 193
              G +   +   
Sbjct: 243 FIVGGAFDGIETM 255


>gi|61211423|sp|Q5ZUE0|CLPX_LEGPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 424

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 109 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 160

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 161 QKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------H 305
                      ++  ++T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDE 280

Query: 306 VSR-----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           VS+              L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K
Sbjct: 281 VSKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFK 340

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            EG  L+F  +++ A+A  A+        +GAR L++++E +L D  +    L+    VV
Sbjct: 341 MEGSELEFRGEALIAIAKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVV 395

Query: 414 IDAEYVR 420
           ID   V 
Sbjct: 396 IDESVVN 402



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIVYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 185 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFI 244

Query: 183 GGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+         S +  S + K  + S  +    L + ESD LI
Sbjct: 245 CGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLI 294


>gi|108804373|ref|YP_644310.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765616|gb|ABG04498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rubrobacter
           xylanophilus DSM 9941]
          Length = 420

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 65/331 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI-----SNFDIPGGASVGILNLSELFSKVMGSG 203
           +   KK+    + +    I++   + D      SN  + G    G   L+E  +K++   
Sbjct: 75  QEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSGKTLLAETLAKILNVP 134

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     
Sbjct: 135 FAIADATALTEAG-YVGEDVENILLKLIQAADFDVKKAET-GIIYIDEIDKIARKADNPS 192

Query: 264 I--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EG+  S             +  I+T +ILFI  GAF      
Sbjct: 193 ITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQIDTKNILFICGGAFGGLEDI 252

Query: 305 ----------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNK 331
                                          +P DL     +PE  GR PV   L SL +
Sbjct: 253 IRQRIGKRSIGFSSGLDRRLEEDSDEILRHVQPEDLLKYGLIPEFVGRLPVISTLHSLQE 312

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            D   ILT+ ++ L+ QY+++ + + + L FT++++ A+A+ A+   +     GAR L++
Sbjct: 313 RDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIAEQALERGT-----GARGLRS 367

Query: 392 VMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
           ++E  L    +      + T  V+DA+ VR 
Sbjct: 368 ILEAALLPTMYELPSRSDVTKCVVDADTVRE 398



 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            PREI   L+ Y+IGQ++AK+ +++A+ N ++R Q+ A+  D  EL   NILL+GPTG G
Sbjct: 60  KPREINRILNEYVIGQEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSG 119

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++       D
Sbjct: 120 KTLLAETLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDVKKAETGIIYID 179

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A       I   + G+       ++    +                   D  N  
Sbjct: 180 EIDKIARKADNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQIDTKNIL 239

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G + G L   + +   K          R   +     L   + + L+
Sbjct: 240 FICGGAFGGLEDIIRQRIGKRSIGFSSGLDRRLEEDSDEILRHVQPEDLL 289


>gi|94266225|ref|ZP_01289933.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93453198|gb|EAT03659.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 600

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 170/438 (38%), Gaps = 81/438 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------- 50
           +  F+ +P E++S LD+Y++GQQ+AK  +A  +   + R     + R             
Sbjct: 67  EFHFDLAPEELISHLDQYVVGQQEAKATLATKICTHFNRISRSLERRRVGDMNGDGGNVG 126

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  N+LL+GPTGVGKT + + +AR  G PF+K + TKF+E GYVG +V+ +IRDLV  A
Sbjct: 127 RIKNNVLLIGPTGVGKTYLIKLIARHLGVPFVKGDATKFSETGYVGGDVDDLIRDLVREA 186

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            + +  +R   V     ++  ++I      +    +   V R  L+  E  + E++++V 
Sbjct: 187 DHDLERARFGIVY----LDEVDKIAGGEGRRGLDVSRSGVQRALLKPME--ETEVEMKVP 240

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +            + +  +   +   +   + I   +   +  L           
Sbjct: 241 HDPISMI---------EAVEHYRQTGKRRRQTVNTRHILFIMSGAFNGLEET-------- 283

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
                                   +  R     IG                S+V+   G 
Sbjct: 284 ------------------------VRRRLQQRSIGFE--------------STVAAAAG- 304

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                  F+               E  GR PV   L  L ++D   IL++  S++I+  K
Sbjct: 305 ---RPGAFLKKIKPEDLVDYGFESEFVGRLPVVAVLDELAEADLYHILSNPNSSVIVSKK 361

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           +  K  GI L F + ++  LA  A          GAR L +V+ER L          + +
Sbjct: 362 QDFKAYGIELYFEDVALRQLAVQAAR-----ERTGARALVSVVERALLHFERKLPSTEIR 416

Query: 411 TVVIDAEYVRLHIGDFPS 428
            +V+D++ V    G    
Sbjct: 417 HLVVDSKLVADPAGTLHK 434


>gi|228478308|ref|ZP_04062916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
 gi|228249987|gb|EEK09257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           salivarius SK126]
          Length = 408

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 145/363 (39%), Gaps = 67/363 (18%)

Query: 115 RESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           RE   +EV  + A     + +LD L         A            +    ++   D +
Sbjct: 46  REEMAEEVLADLAETPKPKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDND 105

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V    S+I      G    G   L++  ++ +          S+ +    +  D  + L+
Sbjct: 106 VDLQKSNILMI---GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAG-YVGEDVENILL 161

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 162 KLIQAADFNIERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      +   I+T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSY 280

Query: 305 ------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                    +   L+PE  GR PV   L+ L   D   ILT+  + L+ QY+ L+  +G+
Sbjct: 281 MQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L+F +D+++A+A  A+   +     GAR L++++E V+ D+ F     ++ T V I  E
Sbjct: 341 ELEFDQDALEAIATKAIERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKE 395

Query: 418 YVR 420
            V 
Sbjct: 396 AVD 398



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L     P+E++  L+ Y++GQ  AKRA+A+A+ N ++R        D   +L   NIL++
Sbjct: 57  LAETPKPKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 117 GPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +      IE    S      
Sbjct: 177 GIIYV-------DEIDKIAKKGENVSITRDVSGEGVQQALLKI----IEGTVASVPPQGG 225

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  +  ++   +   V G+    +  +  +     +   ++++ ID D+ +   I 
Sbjct: 226 RKHPNQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIV 285

Query: 240 MVENYGIVFLDEF 252
             +      + EF
Sbjct: 286 AEDIQKFGLIPEF 298


>gi|90961621|ref|YP_535537.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           salivarius UCC118]
 gi|227890708|ref|ZP_04008513.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|122449131|sp|Q1WU81|CLPX_LACS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|90820815|gb|ABD99454.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
 gi|227867646|gb|EEJ75067.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 408

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 59/303 (19%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ + 
Sbjct: 106 TELQKSNICLVGPTGSGKTFLAQNLARILNVPFAIADATTLTEAG-YVGEDVENILLKLL 164

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 165 QNADYDVERAQ-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 223

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T +ILFI  GAF                                  
Sbjct: 224 GGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQ 283

Query: 309 ---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P DL     +PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + + L
Sbjct: 284 QIIPEDLLKFGLIPEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSL 343

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            F +D++  +A +A+  N+     GAR L++++E  + DI F        K VVI  + V
Sbjct: 344 KFEDDAVKEIAHLAIERNT-----GARGLRSIVEATMRDIMFDIPSEDNIKEVVITKDTV 398

Query: 420 RLH 422
              
Sbjct: 399 DGK 401



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R        D  EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R     D
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +      D +N  
Sbjct: 183 EIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNIL 242

Query: 181 IPGGASVGILNLS 193
              G +   +   
Sbjct: 243 FIVGGAFDGIETM 255


>gi|261855008|ref|YP_003262291.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Halothiobacillus neapolitanus c2]
 gi|261835477|gb|ACX95244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halothiobacillus neapolitanus c2]
          Length = 434

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 73/323 (22%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            ++++K+ D +        SN  + G    G   L++  ++V+          ++ +   
Sbjct: 103 RKVAEKDKDSDSEPVELSKSNILLIGPTGSGKTLLAQTLARVLDVPFAIADATTLTEA-- 160

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSRE 269
                      D++ + +  +Q  +       +GIV++DE DKI  +     I   VS E
Sbjct: 161 ------GYVGEDVENILQKLLQRCDYDVEKAQHGIVYIDEIDKITRKSENPSITRDVSGE 214

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------- 305
           GVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF              
Sbjct: 215 GVQQALLKLIEGTQASVPPQGGRKHPQQEFVQLDTTNILFICGGAFSGLDSIIRQRIEKG 274

Query: 306 ------------VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                         R AD               L+PE  GR PV   L  L+++    IL
Sbjct: 275 GIGFSAEVKSKDDKRAADELLTQIESEDLTRYGLIPEFIGRLPVIATLNELDEAALVKIL 334

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L  QY  L + EG+ LD  ED++  +A  A+   +     GAR L+T++E VL 
Sbjct: 335 VEPKNALTKQYMRLFEMEGVELDLREDALREVARQAIKRKT-----GARGLRTIVEHVLL 389

Query: 399 DISFSASDLQE-KTVVIDAEYVR 420
           D  F     +  + VV+DA  VR
Sbjct: 390 DTMFDVPSTENVQKVVVDASVVR 412



 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 21/241 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-------------DELMPK 54
           +P+E+V  LD Y+IGQQ AKRA+A+A+ N ++R  L    R              EL   
Sbjct: 63  TPKELVEALDEYVIGQQRAKRALAVAVYNHYKRLNLFGSTRKVAEKDKDSDSEPVELSKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+      V
Sbjct: 123 NILLIGPTGSGKTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVENILQKLLQRCDYDV 182

Query: 115 RESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
            +++      DE+ +    +    I   + G+       ++                 + 
Sbjct: 183 EKAQHGIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTQASVPPQGGRKHPQQ 242

Query: 170 ADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                D +N     G +   L+      +    +G   + K +   +     L + ES+ 
Sbjct: 243 EFVQLDTTNILFICGGAFSGLDSIIRQRIEKGGIGFSAEVKSKDDKRAADELLTQIESED 302

Query: 227 L 227
           L
Sbjct: 303 L 303


>gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX
           [Lactococcus lactis subsp. lactis KF147]
          Length = 411

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 58/297 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          S+ +    +  D  + L+ +      
Sbjct: 110 SNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YVGEDVENILLKLLQASDF 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 NIERAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF-------------------------------------HV 306
              +   I+T +ILFI  GAF                                       
Sbjct: 228 PNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAED 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F +++
Sbjct: 288 IQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E V+ DI F     +E   V+I+   V   
Sbjct: 348 LMAIARKAIERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGK 399



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILL 58
           ++    +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A       EL   NILL
Sbjct: 55  EMLEVKTPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + 
Sbjct: 115 IGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAE 174

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 174 SDISNFDIPGGASVGILN 191
            D  N     G +   + 
Sbjct: 235 IDTKNILFIVGGAFDGIE 252


>gi|292493107|ref|YP_003528546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           halophilus Nc4]
 gi|291581702|gb|ADE16159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           halophilus Nc4]
          Length = 424

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 152/380 (40%), Gaps = 83/380 (21%)

Query: 107 VDVAINIVRESRRDEVR--EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           V++  +I+RE  +D +   + + +     I D L       N      KK+    + +  
Sbjct: 43  VELCNDIIREEMQDRLSSGKSSHLPTPHEIRDILNQYVIGQNR----AKKVLSVAVYNHY 98

Query: 165 IDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             +++   + D+    SN  + G    G   L+E  ++++          ++ +      
Sbjct: 99  KRLQLGKKNDDVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEA----- 153

Query: 221 RDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                   D++ + +  +Q  +        GIV++DE DKI  +     I   VS EGVQ
Sbjct: 154 ---GYVGEDVENIIQKLLQKCDYDVEKAQTGIVYIDEIDKISRKSDNPSITRDVSGEGVQ 210

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------------- 304
           + LL L+EG+  S            ++  +NT +ILFI  GAF                 
Sbjct: 211 QALLKLIEGTIASVPPQGGRKHPQQEFLQVNTANILFICGGAFAGLEKIIRDRSKKGGIG 270

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                 P DL+     PE  GR PV   L  L+++    ILT+ 
Sbjct: 271 FSAEVKSVEDKRSMGEILQAVEPEDLIKYGLIPEFVGRMPVVATLDELDEAALIRILTEP 330

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L  Q+  L + E   ++F ED++ A+A  A+   +     GAR L++++E VL D  
Sbjct: 331 KNALTKQFARLFEMENSKVEFREDALRAVAAKAMERKT-----GARGLRSILENVLLDTM 385

Query: 402 FSASDLQ-EKTVVIDAEYVR 420
           +    +     VVID   V+
Sbjct: 386 YDLPSMDHVSKVVIDESVVK 405



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 12/261 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           K +   +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+G
Sbjct: 62  KSSHLPTPHEIRDILNQYVIGQNRAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++  
Sbjct: 122 PTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTG 181

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + +  +    I   + G+       ++    +            +      +
Sbjct: 182 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQVN 241

Query: 176 ISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDT 232
            +N   I GGA  G+  +    SK  G G   +++     +     L   E + LI    
Sbjct: 242 TANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEILQAVEPEDLIKYGL 301

Query: 233 VHRDSIQMVENYGIVFLDEFD 253
           +      +     +  LDE D
Sbjct: 302 IPE---FVGRMPVVATLDELD 319


>gi|256820836|ref|YP_003142115.1| ATP-dependent protease ATP-binding subunit ClpX [Capnocytophaga
           ochracea DSM 7271]
 gi|315224015|ref|ZP_07865856.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga
           ochracea F0287]
 gi|256582419|gb|ACU93554.1| Sigma 54 interacting domain protein [Capnocytophaga ochracea DSM
           7271]
 gi|314945986|gb|EFS97994.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga
           ochracea F0287]
          Length = 410

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 136/321 (42%), Gaps = 68/321 (21%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
               +D E++I+        SN  + G    G   ++   +K++           + +  
Sbjct: 99  QQPDADDEVEIQK-------SNVIMVGETGTGKTLVARTIAKMLNVPIAIVDATVLTEAG 151

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                 ES     +  + + +   VE    GIVF+DE DKI  +     I   VS EGVQ
Sbjct: 152 YVGEDVES----ILSRLLQAADYDVEKAERGIVFIDEIDKIARKSDNPSITRDVSGEGVQ 207

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH---------------- 305
           + LL L+EGS V+            KY  +NT+HILFIA GAF                 
Sbjct: 208 QALLKLLEGSVVNVPPKGGRKHPDQKYIEVNTEHILFIAGGAFDGIERVISKRLNMQAVG 267

Query: 306 ---------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                  +   L+PEI GR PV  ++  L+K   R+ILT+ ++ 
Sbjct: 268 YNSSKNTQVDRKNLVQYIIPKDLKDFGLIPEIIGRLPVLTYMNPLDKHTLRMILTEPKNA 327

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           +I QYK+L + +GI  D TE+++D + + A+        +GAR L+++ E +L D  F  
Sbjct: 328 IIKQYKKLFEMDGIKFDITEEALDFIVEKALEYK-----LGARGLRSLCENILTDAMFEL 382

Query: 405 SDLQEKTVVIDAEYVRLHIGD 425
            +   K + I  EY    +  
Sbjct: 383 PNSGVKELTITKEYAEEKLNK 403



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P AD   E+   N+++VG TG GK
Sbjct: 65  TPQEIKKFLDQYVIGQDFTKKILSVAVYNHYKRLQQPDADDEVEIQKSNVIMVGETGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V
Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAADYDVEKAERGIV 180


>gi|52842085|ref|YP_095884.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629196|gb|AAU27937.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 426

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 111 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 163 QKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV 222

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------H 305
                      ++  ++T +ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDE 282

Query: 306 VSR-----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           VS+              L+PE  GR PV   L+ L+++    ILT  ++ L  Q++ L K
Sbjct: 283 VSKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFK 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            EG  L+F  +++ A+A  A+        +GAR L++++E +L D  +    L+    VV
Sbjct: 343 MEGSELEFRGEALIAIAKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVV 397

Query: 414 IDAEYVR 420
           ID   V 
Sbjct: 398 IDESVVN 404



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 67  TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 127 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQQGIVYIDEI 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFI 246

Query: 183 GGASVGILNL----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G +   L+         S +  S + K  + S  +    L + ESD LI
Sbjct: 247 CGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLI 296


>gi|313158087|gb|EFR57492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alistipes sp.
           HGB5]
          Length = 425

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 133/339 (39%), Gaps = 62/339 (18%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            +    A            +    + KE ++E+     D SN  + G    G   ++   
Sbjct: 89  VIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEI-----DKSNIVLVGPTGTGKTLMARTI 143

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           +K++           + +    +  D    L  +  V   +++  E  GIVF+DE DKI 
Sbjct: 144 AKLLKVPFTIVDATVLTEAG-YVGEDVESILSRLLQVADYNVEQAE-RGIVFIDEIDKIA 201

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
            +     I   VS EGVQ+ LL ++EG+ V+            K+  ++T +ILFI  GA
Sbjct: 202 RKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQVDTRNILFICGGA 261

Query: 304 -------------------------------------FHVSRPADLLPEIQGRFPVRVHL 326
                                                    +   L+PE+ GR PV  ++
Sbjct: 262 FDGVEKKIAQRLNTRAMGYGRLRADRIDRNNLMQYITPQDLKSFGLIPELVGRLPVLTYM 321

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           + L++   R ILT+ ++ ++ QYK L + + + L F +  +D + D AV        +GA
Sbjct: 322 QPLSREALRSILTEPKNAIVKQYKRLFELDNVKLTFDDAVLDYIVDKAVEFK-----LGA 376

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           R L+++ E ++ D  F       +  V+   Y +  I  
Sbjct: 377 RGLRSICEAIMMDTMFDLPSTDTRKFVVTLPYAKKKIEK 415



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 9/219 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLV 59
           +K+     P +I   LD+Y+IGQ DAKR +A+A+ N ++R    P +   E+   NI+LV
Sbjct: 70  LKMEELLKPAQIKDFLDQYVIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 129

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ R
Sbjct: 130 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 189

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          E      
Sbjct: 190 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 249

Query: 175 DISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRM 210
           D  N   I GGA  G+       L ++ MG GR +  R+
Sbjct: 250 DTRNILFICGGAFDGVEKKIAQRLNTRAMGYGRLRADRI 288


>gi|46198559|ref|YP_004226.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus
           HB27]
 gi|61211543|sp|Q72L14|CLPX_THET2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|46196181|gb|AAS80599.1| ATP-dependent clp protease ATP-binding subunit clpX [Thermus
           thermophilus HB27]
          Length = 399

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 150/381 (39%), Gaps = 55/381 (14%)

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL--DALVGKTATSNTREVFRK 153
           GR +E  I D+      + R        E+ +     R+     +          +   K
Sbjct: 19  GRLLESPIEDVYICEDCVERAQEILAQEERRAPKGPSRLPRPQEIKAHLDQYVVGQEAAK 78

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +     + +    +   +     +N  + G    G   L+E  ++ +          ++ 
Sbjct: 79  RALSVAVYNHYKRLLHPEAEIGKANILLIGPTGTGKTLLAETLARFLDVPFAIADATTLT 138

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGV 271
           +    +  D  + L+ +       ++  E  GIV++DE DKI  +         VS EGV
Sbjct: 139 EAG-YVGEDVENVLLRLLQNADFDVERAE-MGIVYIDEIDKIARKSENPSLTRDVSGEGV 196

Query: 272 QRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR--- 308
           Q+ LL ++EG+  +            ++  +NT +ILFI  GAF          V +   
Sbjct: 197 QQALLKIIEGTVANVPPQGGRKHPHQEFIPVNTKNILFILGGAFEGLENIVKARVGKTTI 256

Query: 309 ----------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL+     PE  GR P+ V L  L + D   ILT+ ++ L+ 
Sbjct: 257 GFTGERREREEPLEVIPEDLIKFGMIPEFVGRAPLIVQLHPLGEDDLVRILTEPKNALVK 316

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL + EGI L FT+ ++  +A  A+   +     GAR L+ ++E+ + D+ F A   
Sbjct: 317 QYQELFRMEGIELRFTQAALKEVARRALKRGT-----GARGLRAILEKAMVDLMFEAPGS 371

Query: 408 QEKTVVIDAEYVRLHIGDFPS 428
             K +V D  ++   +     
Sbjct: 372 GVKEIVFDLPHLDHPLKALEE 392



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 9/190 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT 
Sbjct: 60  PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHPE---AEIGKANILLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A   V  +       DE+ 
Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNADFDVERAEMGIVYIDEID 176

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIP 182
           + A  +    +   + G+       ++    + +                 +  N   I 
Sbjct: 177 KIARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIPVNTKNILFIL 236

Query: 183 GGASVGILNL 192
           GGA  G+ N+
Sbjct: 237 GGAFEGLENI 246


>gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
           lactis subsp. lactis CV56]
          Length = 411

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 58/297 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          S+ +    +  D  + L+ +      
Sbjct: 110 SNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YVGEDVENILLKLLQASDF 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 NIERAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF-------------------------------------HV 306
              +   I+T +ILFI  GAF                                       
Sbjct: 228 PNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAED 287

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR P+   L+ L + D   ILT+ ++ LI QYK+L+  + + L+F +++
Sbjct: 288 IQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEA 347

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           + A+A  A+   +     GAR L++++E V+ DI F     +E   V+I+   V   
Sbjct: 348 LMAIARKAIERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGK 399



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILL 58
           ++    +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A       EL   NILL
Sbjct: 55  EMLEVKTPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + 
Sbjct: 115 IGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAE 174

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 174 SDISNFDIPGGASVGILN 191
            D  N     G +   + 
Sbjct: 235 IDTKNILFIVGGAFDGIE 252


>gi|310829090|ref|YP_003961447.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
 gi|308740824|gb|ADO38484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
          Length = 421

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V+          S+ +    +  D  + L+ +      
Sbjct: 110 SNIILIGPTGSGKTLLAQTLARVLDVPFAIADATSLTEAG-YVGEDVENILLKLLQAADM 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 169 DVERAQK-GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 228 PHQEFIQLDTSNILFICGGAFDGMDGVIERRMEKGSMGFSATIKTSDEKAKEELLDNIEP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   L++L++     ILT+ ++ L+ QYK++ + EG+ L+F +
Sbjct: 288 QDLLKYGLIPEFIGRIPVIATLQNLDEEALINILTEPKNALVKQYKKMFEIEGVALEFEK 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A+ A+   +     GAR L+ ++E ++ DI F     +    V+I  + V    
Sbjct: 348 DALKAIAEKALQNGT-----GARGLRGIIENIMTDIMFDIPSEEGVSKVIITKDVVEQLE 402

Query: 424 GDFPSET 430
                  
Sbjct: 403 APVVESQ 409



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +PREI ++LD Y+I Q  AKRA+A+A+ N ++R     D  D  EL   NI+L+GPTG G
Sbjct: 62  TPREIKAKLDEYVISQHRAKRALAVAVYNHYKRINAMLDSDDDVELQKSNIILIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++     D
Sbjct: 122 KTLLAQTLARVLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADMDVERAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + +  +    I   + G+       ++    + +                 D SN  
Sbjct: 182 EIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQLDTSNIL 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
            I GGA  G+  + E   +    G    I+ S +K   EL+ 
Sbjct: 242 FICGGAFDGMDGVIERRMEKGSMGFSATIKTSDEKAKEELLD 283


>gi|54023302|ref|YP_117544.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardia farcinica
           IFM 10152]
 gi|61211421|sp|Q5Z061|CLPX_NOCFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54014810|dbj|BAD56180.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
          Length = 426

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T ++LFI +GAF                                      P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIISDRTGHRGIGFGAEVRSKAEIDTTDHFADVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L + +G+ L+FT+
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTQ 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +      +   VV+ A+ V  ++
Sbjct: 353 DALEAIADQAILRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVARVVVTADTVNDNV 407



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDSRGETVELTKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|15620529|gb|AAL03913.1|U30252_1 ClpX [Synechococcus elongatus PCC 7942]
 gi|2351824|gb|AAB68678.1| ATP-dependent Clp protease, regulatory subunit [Synechococcus
           elongatus PCC 7942]
          Length = 450

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 124/300 (41%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +  V   
Sbjct: 140 SNILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAG-YVGEDVENILLRLLQVADL 198

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 199 DIEEAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKH 257

Query: 288 ----YGSINTDHILFIASGAF-----------------------------------HVSR 308
                  I+T +ILFI  GAF                                       
Sbjct: 258 PYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME 317

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR PV   L  L+++    ILT+    L+ QY++LM  + + L+F 
Sbjct: 318 PEDLVQFGLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFR 377

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           +D+I+A+A  A    +     GAR L+ ++E ++ ++ +     Q+ T   I  E V   
Sbjct: 378 QDAIEAIAREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVTHCTITREMVEKR 432



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 14/243 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------LMPK 54
           + L+    P +I   LD ++IGQ +AK+ +++A+ N ++R         E      +   
Sbjct: 81  LTLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEFEAGETIEIQKS 140

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+ VA   +
Sbjct: 141 NILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDI 200

Query: 115 RESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
            E++R     DE+ + A  +    I   + G+       ++    + +            
Sbjct: 201 EEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQ 260

Query: 170 ADTSSDISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                D  N   I GGA VG+  L +  L  K +G    ++ +   Q+    L   E + 
Sbjct: 261 DCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHMEPED 320

Query: 227 LID 229
           L+ 
Sbjct: 321 LVQ 323


>gi|332300232|ref|YP_004442153.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177295|gb|AEE12985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 439

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 75/329 (22%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           ++K    + S K  D+E+A +     N  + G    G   L++  ++++       +  +
Sbjct: 119 QEKGEKSDESSKLDDVEIAKS-----NIIMVGPTGCGKTLLAQSIARMLQ------VPFA 167

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQ------MVENYGIVFLDEFDKIVARDSGNGI- 264
           +      ++        D++++    +Q           GIVF+DE DKI  +     I 
Sbjct: 168 MVDA--TVLTQAGYVGEDIESIISRLLQNCDYDVAAAERGIVFIDEIDKIARKGDNPSIT 225

Query: 265 -GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF-------- 304
             VS EGVQ+ LL L+EGS ++            K+  +NT  ILFI +GAF        
Sbjct: 226 RDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQVNTQQILFICAGAFDGIERIIG 285

Query: 305 --------------------------HVS----RPADLLPEIQGRFPVRVHLKSLNKSDF 334
                                     H++    R   L+PEI GR P+  +L +L+    
Sbjct: 286 SRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLIPEIIGRLPILTYLDALDSDSL 345

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ +  QY++L + +G+ L F ED++  +  VAV        +GAR L++++E
Sbjct: 346 LRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHVAVETK-----LGARGLRSIVE 400

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++ D  +    L+ KT+ I  +Y R  +
Sbjct: 401 KIMIDAMYEIPSLKRKTLRITEQYARSKV 429



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
            P+EI + LDRY+IGQ DAK+ +++A+ N ++R     +  +           E+   NI
Sbjct: 82  KPQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRILASQEKGEKSDESSKLDDVEIAKSNI 141

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           ++VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+      V  
Sbjct: 142 IMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCDYDVAA 201

Query: 117 SRRDEV 122
           + R  V
Sbjct: 202 AERGIV 207


>gi|290960372|ref|YP_003491554.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           scabiei 87.22]
 gi|260649898|emb|CBG73014.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           scabiei 87.22]
          Length = 428

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGGQSREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILIEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL  + + 
Sbjct: 333 ALVKQYQRLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ VR ++       D
Sbjct: 388 VPSRKDVARVVITADVVRSNVNPTLIPRD 416



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +  +  +  +M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|254415781|ref|ZP_05029539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177487|gb|EDX72493.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus
           chthonoplastes PCC 7420]
          Length = 446

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  + V+          ++ +    +  D  + L+ +  V   
Sbjct: 136 SNILLLGPTGCGKTLLAQTLAAVLDVPFAVADATTLTEAG-YVGEDVENILLRLLQVADL 194

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 195 DVEEAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 253

Query: 288 ----YGSINTDHILFIASGAF-----------------------------------HVSR 308
                  I+T +ILFI  GAF                                       
Sbjct: 254 PYQDCIQIDTGNILFICGGAFVGLEKVIEQRFGKRSIGFIQPGEGQSKEKRAADLLRHLE 313

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR P+   +  L++     ILT   + L+ QY++L+K + + L FT
Sbjct: 314 PDDLVKFGMIPEFIGRIPIAAVVDPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLGFT 373

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           EDS+ A+A  A    +     GAR L+ ++E ++ ++ +     ++ T   I  E V   
Sbjct: 374 EDSLRAIAQEAYRRKT-----GARALRGIVEELMLEVMYELPSRKDVTRCTITREMVEKR 428



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 17/245 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDEL 51
           + L     PRE+ + LD ++IGQ DAK+ +++A+ N ++R             +D   EL
Sbjct: 74  LSLNQIPKPRELKNYLDEHVIGQDDAKKVLSVAVYNHYKRLSFLEAKAKGKAGSDDPVEL 133

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LA +   PF   + T  TE GYVG +VE I+  L+ VA 
Sbjct: 134 QKSNILLLGPTGCGKTLLAQTLAAVLDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193

Query: 112 NIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             V E++R     DE+ + A  +    I   + G+       ++    + +         
Sbjct: 194 LDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 253

Query: 167 IEVADTSSDISNF-DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQK-CYPELMRDE 223
                   D  N   I GGA VG+  + E  F K      +     S +K     L   E
Sbjct: 254 PYQDCIQIDTGNILFICGGAFVGLEKVIEQRFGKRSIGFIQPGEGQSKEKRAADLLRHLE 313

Query: 224 SDRLI 228
            D L+
Sbjct: 314 PDDLV 318


>gi|302035646|ref|YP_003795968.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
 gi|300603710|emb|CBK40041.1| ATP-dependent Clp protease, ATP-binding subunit clpX [Candidatus
           Nitrospira defluvii]
          Length = 418

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 144/361 (39%), Gaps = 63/361 (17%)

Query: 116 ESRRDEVREQASINAE-ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           E  ++E+  +    AE +  LD           + +    + +        + +V D   
Sbjct: 51  EEAKEEISSKLKKPAEIKHHLD--QYVVGQDRAKRILSVAVHNHYKRISAKEKDVDDVEL 108

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
              N  + G    G   L++  +K +          ++ +    +  D  + ++ +    
Sbjct: 109 QKGNILVIGPTGTGKTLLAQTLAKFLDVPFTLADATTLTEAG-YVGEDVENIILKLLQAA 167

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +       
Sbjct: 168 DYDVERAE-RGIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGR 226

Query: 287 -----KYGSINTDHILFIASGAF----HV------------------------------S 307
                ++  +NT +ILFI  GAF    H+                               
Sbjct: 227 KHPHQEFIQVNTSNILFICGGAFVGLEHIIEQRMNRKSMGFGAEVRGRNDIRLGELLPHV 286

Query: 308 RPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           +P D     L+PE  GR PV   L  L++     ILT+  + L  QY++L+  E + L F
Sbjct: 287 QPEDLLKYGLIPEFIGRLPVVATLDELDEQALIRILTEPRNALTKQYEKLLSFEKVKLRF 346

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRL 421
           TE ++ A+A  A    +     GAR L++++E  + D+ + A    Q K VVI  + +  
Sbjct: 347 TEGALSAVARKAFTQKT-----GARGLRSILEEAMLDVMYDAPSQKQIKEVVITEDAISG 401

Query: 422 H 422
            
Sbjct: 402 K 402



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P EI   LD+Y++GQ  AKR +++A+ N ++R        D  EL   NIL++GPTG G
Sbjct: 63  KPAEIKHHLDQYVVGQDRAKRILSVAVHNHYKRISAKEKDVDDVELQKGNILVIGPTGTG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE II  L+  A   V  + R  V   
Sbjct: 123 KTLLAQTLAKFLDVPFTLADATTLTEAGYVGEDVENIILKLLQAADYDVERAERGIVY-- 180

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                 + I        + S TR+V  + ++   +  K I+  VA+    
Sbjct: 181 -----IDEIDKISRKSDSPSITRDVSGEGVQQALL--KLIEGTVANVPPQ 223


>gi|317050718|ref|YP_004111834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
 gi|316945802|gb|ADU65278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurispirillum indicum S5]
          Length = 429

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 152/386 (39%), Gaps = 71/386 (18%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
              ++  +D+ +   ++ R S   E  ++  +  +ER    L         R       R
Sbjct: 54  HGADEAPQDVEEYMGSLPRPSEIKESLDE-YVIGQERSKKILSVAVYNHYKRIYSLLDSR 112

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             E  D EI           SN  + G    G   L++  ++V+          ++ +  
Sbjct: 113 GAEGEDVEI---------SKSNILLIGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAG 163

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 164 -YVGEDVENILLKLLQSCDFDVERAQ-RGIIYIDEIDKISRKSENVSITRDVSGEGVQQA 221

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------ 305
           LL +VEG+  +            ++  I+T +ILFI  GAF                   
Sbjct: 222 LLKIVEGTVANVPPKGGRKHPNQEFIQIDTTNILFICGGAFEGLDGIVGRRLGKKMLGFG 281

Query: 306 ----------------VSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P D     L+PE+ GR PV   L+ LN++    IL + ++ 
Sbjct: 282 QELSENRKLQKDELLAKVHPEDIIRYGLIPELVGRLPVIAALEELNEAALIQILQEPKNA 341

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QY  ++  +   L FT ++   +A  A+   +     GAR L+++ME+V+ DI +  
Sbjct: 342 LVKQYAHMLAMDSTELVFTPEACTEVAREALKRKT-----GARGLRSIMEQVMLDIMYDI 396

Query: 405 SDLQE--KTVVIDAEYVRLHIGDFPS 428
            D +   K  +IDAE V+        
Sbjct: 397 PDQKGDRKRCIIDAEVVQGTKKPVVE 422



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 13/233 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------QLPADLRDELMPKNILLVGPT 62
           P EI   LD Y+IGQ+ +K+ +++A+ N ++R       +       E+   NILL+GPT
Sbjct: 73  PSEIKESLDEYVIGQERSKKILSVAVYNHYKRIYSLLDSRGAEGEDVEISKSNILLIGPT 132

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+      V  ++R   
Sbjct: 133 GSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLLQSCDFDVERAQRGII 192

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + +  +    I   + G+       ++    + +                 D +
Sbjct: 193 YIDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTVANVPPKGGRKHPNQEFIQIDTT 252

Query: 178 NFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           N     G +   L+  +     K M    ++       +    L +   + +I
Sbjct: 253 NILFICGGAFEGLDGIVGRRLGKKMLGFGQELSENRKLQKDELLAKVHPEDII 305


>gi|313885837|ref|ZP_07819580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924741|gb|EFR35507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 439

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 75/329 (22%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           ++K    + S K  D+E+A +     N  + G    G   L++  ++++       +  +
Sbjct: 119 QEKDEKSDESSKLDDVEIAKS-----NIIMVGPTGCGKTLLAQSIARMLQ------VPFA 167

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQ------MVENYGIVFLDEFDKIVARDSGNGI- 264
           +      ++        D++++    +Q           GIVF+DE DKI  +     I 
Sbjct: 168 MVDA--TVLTQAGYVGEDIESIISRLLQNCDYDVAAAERGIVFIDEIDKIARKGDNPSIT 225

Query: 265 -GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF-------- 304
             VS EGVQ+ LL L+EGS ++            K+  +NT  ILFI +GAF        
Sbjct: 226 RDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQVNTQQILFICAGAFDGIERIIG 285

Query: 305 --------------------------HVS----RPADLLPEIQGRFPVRVHLKSLNKSDF 334
                                     H++    R   L+PEI GR P+  +L +L+    
Sbjct: 286 SRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLIPEIIGRLPILTYLDALDSDSL 345

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ +  QY++L + +G+ L F ED++  +  VAV        +GAR L++++E
Sbjct: 346 LRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHVAVETK-----LGARGLRSIVE 400

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +++ D  +    L+ KT+ I  +Y R  +
Sbjct: 401 KIMIDAMYEIPSLKRKTLRITEQYARSKV 429



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
            P+EI + LDRY+IGQ DAK+ +++A+ N ++R     +  +           E+   NI
Sbjct: 82  KPQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRILASQEKDEKSDESSKLDDVEIAKSNI 141

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           ++VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+      V  
Sbjct: 142 IMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCDYDVAA 201

Query: 117 SRRDEV 122
           + R  V
Sbjct: 202 AERGIV 207


>gi|226307300|ref|YP_002767260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           erythropolis PR4]
 gi|229493247|ref|ZP_04387039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus
           erythropolis SK121]
 gi|259491266|sp|C1A1N6|CLPX_RHOE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226186417|dbj|BAH34521.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           erythropolis PR4]
 gi|229319978|gb|EEN85807.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus
           erythropolis SK121]
          Length = 426

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAELDTVDRFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR P+   + +L+K     IL++ ++ L+ QY+ L   +G+ L+FTE
Sbjct: 293 EDLIKFGLIPEFIGRLPMIASVTNLDKESLVQILSEPKNALVKQYRRLFDMDGVELEFTE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           +++DA+AD A+   +     GAR L+ +ME VL  + +      + + VV+ AE V  ++
Sbjct: 353 EALDAIADQAILRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVEKVVVTAETVNDNV 407



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|224025974|ref|ZP_03644340.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
 gi|224019210|gb|EEF77208.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM
           18228]
          Length = 386

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 71/337 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 66  NHYKRLLQPVTKDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 116

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +      +++  E  GIVF+DE DKI  +     I   V
Sbjct: 117 ATVLTEAG-YVGEDIESILTRLLQAADYNVEEAE-RGIVFIDEIDKIARKGDNPSITRDV 174

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA------------ 303
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GA            
Sbjct: 175 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPVNTKNILFICGGAFDGIERKIAQRL 234

Query: 304 --------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                         +   L+PEI GR P+  +L  L++   R I
Sbjct: 235 NTNVVGYSAAKETVKVDRNNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRQALRNI 294

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D AV        +GAR L+ ++E ++
Sbjct: 295 LTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDKAVEYK-----LGARGLRAIVETIM 349

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
            D+ F     +  + V+  EY +        + ++  
Sbjct: 350 MDVMFDLPSRKVDSFVVTLEYAKSQ----MEKANLSR 382



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +     P++I   LD+Y+IGQ DAKR +++A+ N ++R   P    D E+   NI++V
Sbjct: 31  LDMNELPKPKDIKEFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPVTKDDVEIEKSNIIMV 90

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V E+ R
Sbjct: 91  GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVEEAER 150

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          E      
Sbjct: 151 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 210

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +  N     G +   +                  + +V+     LM+
Sbjct: 211 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKETVKVDRNNLMQ 257


>gi|323356155|gb|EGA87960.1| Mcx1p [Saccharomyces cerevisiae VL3]
          Length = 421

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 158/385 (41%), Gaps = 60/385 (15%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           D   EL   N+L+VGP+G GKT ++  LA++   P    + T+ T+ GY+G +VE  I  
Sbjct: 40  DEDLELSKSNVLVVGPSGSGKTLLATTLAKILNVPIAITDCTQLTQAGYIGEDVEVCIER 99

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           L+  A         D  R +  I   + I D L    A+  T++V  + ++   +   E 
Sbjct: 100 LLVNA-------EFDVARAEKGIIVLDEI-DKLAKPAASIGTKDVSGEGVQQSLLKIIEG 151

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
             +V  T       DI G  +       E+F           I   +   +  L +    
Sbjct: 152 H-KVEITVKRPVKHDIDGQKNQTTTKKDEVF-----VVDTSNILFMIMGAFVGLDKHIVK 205

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
           R+ DM  + + + + VE                 S N   V +E  +             
Sbjct: 206 RIEDMKKI-QKAGESVE-----------------SSNSKEVEKERAK------------- 234

Query: 286 TKYGSINTDHILFIASG----AFHVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRL 336
            K+   NT   + + +G    A  ++ P D     L+PE+ GR P+   L+ L + D   
Sbjct: 235 -KFRFSNTLEQVELDNGKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFH 293

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + ++ L+ QY+ + K  G+ L  T+ ++  +A  A+         GAR L+ +MER+
Sbjct: 294 ILKEPKNALLDQYEYIFKQFGVRLCVTQKALKKVAQFALK-----EGTGARGLRGIMERL 348

Query: 397 LEDISFSASDLQEKTVVIDAEYVRL 421
           L ++++         V+ID   V  
Sbjct: 349 LLNVNYDCPGSNIAYVLIDEATVDS 373


>gi|56751592|ref|YP_172293.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81301335|ref|YP_401543.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
 gi|61211388|sp|Q5N1P7|CLPX_SYNP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|93141243|sp|O34126|CLPX_SYNE7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56686551|dbj|BAD79773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 6301]
 gi|81170216|gb|ABB58556.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus
           elongatus PCC 7942]
          Length = 449

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 124/300 (41%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +  V   
Sbjct: 139 SNILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAG-YVGEDVENILLRLLQVADL 197

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 198 DIEEAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKH 256

Query: 288 ----YGSINTDHILFIASGAF-----------------------------------HVSR 308
                  I+T +ILFI  GAF                                       
Sbjct: 257 PYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME 316

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR PV   L  L+++    ILT+    L+ QY++LM  + + L+F 
Sbjct: 317 PEDLVQFGLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFR 376

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422
           +D+I+A+A  A    +     GAR L+ ++E ++ ++ +     Q+ T   I  E V   
Sbjct: 377 QDAIEAIAREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVTHCTITREMVEKR 431



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKN 55
           + L+    P +I   LD ++IGQ +AK+ +++A+ N ++R        +     E+   N
Sbjct: 81  LTLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSN 140

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+ VA   + 
Sbjct: 141 ILLIGPTGCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIE 200

Query: 116 ESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           E++R     DE+ + A  +    I   + G+       ++    + +             
Sbjct: 201 EAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQD 260

Query: 171 DTSSDISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               D  N   I GGA VG+  L +  L  K +G    ++ +   Q+    L   E + L
Sbjct: 261 CIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHMEPEDL 320

Query: 228 ID 229
           + 
Sbjct: 321 VQ 322


>gi|189424986|ref|YP_001952163.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter lovleyi
           SZ]
 gi|238692096|sp|B3E1Z3|CLPX_GEOLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189421245|gb|ACD95643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           lovleyi SZ]
          Length = 419

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 74/359 (20%)

Query: 130 AEE-RILDALVGK----TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           AEE R+ DAL             +E   + +   E + K + + V +    I     PG 
Sbjct: 47  AEEIRMEDALGPDVTKLPKPKEIKEFLDEYVIGQETAKKVLSVAVYNHYKRIERPAKPGD 106

Query: 185 ASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
             +   N+     +     ++     + +++         + +      D++ +    +Q
Sbjct: 107 VEMQKSNILILGPTGSGKTLLAQTLARMLKVPFAIADATNLTEAGYVGEDVENIILSLLQ 166

Query: 240 MVE------NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST----- 286
             +        GIV++DE DKI  +         VS EGVQ+ LL ++EG+  S      
Sbjct: 167 AADYDVERAQKGIVYIDEIDKIARKAESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGG 226

Query: 287 ------KYGSINTDHILFIASGAFH----------------------------------V 306
                 ++  ++T +ILFI  GAF                                    
Sbjct: 227 RKHPQQEFLKVDTSNILFICGGAFAGLDGVIQQRIGKKTLGFGADVKKKLEKKAGELLLQ 286

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR P+   L  L++     ILT+ ++ L  QY++L   EG+ L 
Sbjct: 287 VTPEDLLKYGYIPEFIGRLPMLASLTELDEDALVQILTEPKNALTKQYQKLFDMEGVRLR 346

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           FT+ ++ ++A  A+  N+     GAR L+ ++E  + DI +        + VVI  + +
Sbjct: 347 FTDGALVSIAKEALKRNT-----GARGLRAILEGAMLDIMYEIPSQNTVREVVISEDVI 400



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 8/234 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ+ AK+ +++A+ N ++R + PA   D E+   NIL++GPTG GK
Sbjct: 65  KPKEIKEFLDEYVIGQETAKKVLSVAVYNHYKRIERPAKPGDVEMQKSNILILGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARMLKVPFAIADATNLTEAGYVGEDVENIILSLLQAADYDVERAQKGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A       +   + G+       ++    +            +      D SN   
Sbjct: 185 IDKIARKAESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFLKVDTSNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             G +   L+  + +   K          +   +K    L++   + L+    +
Sbjct: 245 ICGGAFAGLDGVIQQRIGKKTLGFGADVKKKLEKKAGELLLQVTPEDLLKYGYI 298


>gi|328957599|ref|YP_004374985.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp.
           17-4]
 gi|328673923|gb|AEB29969.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp.
           17-4]
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 58/294 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 112 SNICLIGPTGSGKTFLAQSLARILNVPFAIADATSLTEAG-YVGEDVENILLKLMQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DVERAQK-GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFHVSR--------------------------------PAD 311
              ++  ++T +ILFI  GAF                                    P D
Sbjct: 230 PHQEFIQLDTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKLDESQSVMQQIIPED 289

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L + D   ILT  ++ L+ QYK+L+  + + L+F +DS
Sbjct: 290 LLKFGLIPEFIGRLPVMAALEKLTEDDLVHILTKPKNALVKQYKKLLALDEVELEFEDDS 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  +A  A+  N+     GAR L++++E ++ +I F      +    VI  + V
Sbjct: 350 LTEIAKKAIERNT-----GARGLRSIIESIMLEIMFDLPSRPEIVKCVITKDTV 398



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRD--ELMPKNILLVGPTGV 64
            P EI   L+ Y+IGQ+ AK+++++A+ N ++R  Q+  + +D  EL   NI L+GPTG 
Sbjct: 63  KPHEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQMGGEEKDGIELQKSNICLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++     
Sbjct: 123 GKTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAADYDVERAQKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +                 D SN 
Sbjct: 183 DEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQLDTSNI 242

Query: 180 DIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               G +   +     + +  KV+G G  KK     Q    +++ ++  + 
Sbjct: 243 LFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKLDESQSVMQQIIPEDLLKF 293


>gi|227509447|ref|ZP_03939496.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191159|gb|EEI71226.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 418

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 146/366 (39%), Gaps = 71/366 (19%)

Query: 123 REQASINAEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVADTSSD 175
            E A     E +L  L          E         R          K ++  ++D + D
Sbjct: 51  EELAPEKTSEDLLKVLTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDD 110

Query: 176 I----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +    SN  + G    G   L++  +K++          ++ +    +  D  + L+ + 
Sbjct: 111 LELQKSNICVIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG-YVGEDVENILLKLL 169

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 +   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 170 QNADYDVDKAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 228

Query: 287 --------KYGSINTDHILFIASGAF---------------------------------- 304
                   ++  I+T +ILFI  GAF                                  
Sbjct: 229 GGRKHPQQEFIQIDTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKYVNSKNIM 288

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE  GR P+   L  L++ D   ILT+ ++ L+ QY++L++ +G  
Sbjct: 289 QSVIPEDMLKFGLIPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAE 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+F   ++  +A +A++ N+     GAR L++++E V+ DI F      +   V+I  E 
Sbjct: 349 LEFQPAALQKMAQLAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSKVIITPET 403

Query: 419 VRLHIG 424
           V  H  
Sbjct: 404 VTNHTE 409



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 9/195 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R        +   EL   NI ++GPTG
Sbjct: 66  LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +    
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVDKAEKGIIY 185

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +          +      D +N
Sbjct: 186 IDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTN 245

Query: 179 F-DIPGGASVGILNL 192
              I GGA  GI  +
Sbjct: 246 ILFIVGGAFDGIEGI 260


>gi|261822506|ref|YP_003260612.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           wasabiae WPP163]
 gi|261606519|gb|ACX89005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium wasabiae WPP163]
          Length = 424

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 121/306 (39%), Gaps = 74/306 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++ +          ++ +              D++ + 
Sbjct: 111 GKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEA--------GYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 222

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKAT 282

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR PV   L+ L++     IL + ++ L  QY+ L  
Sbjct: 283 EGELLSHVEPGDLIKFGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFN 342

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F ++++ A+A  A+   +     GAR L++++E  L +  +    L+    VV
Sbjct: 343 LEGVELEFRDEALTAIAKKAMVRKT-----GARGLRSIVEAALLETMYDLPSLESVDKVV 397

Query: 414 IDAEYV 419
           ID   +
Sbjct: 398 IDESVI 403



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDSSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG 227


>gi|58699714|ref|ZP_00374376.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533769|gb|EAL58106.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 199

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/194 (56%), Positives = 151/194 (77%), Gaps = 2/194 (1%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           +DR+IIGQ DAKRAVAIALRNRWRR Q+P  LRDE++PKNIL++G TGVGKT I+RRLA+
Sbjct: 1   MDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVGKTEIARRLAK 60

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E  R  + ++A I AE+ I+
Sbjct: 61  LAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKKALILAEKTIV 120

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLS 193
           +++VG+ AT  ++++FR++LR+ E  D E+ I V ++ S +  FDIPG  G  VG++N++
Sbjct: 121 NSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMPGGQVGVMNVT 180

Query: 194 ELFSKVMGSGRKKK 207
           E+  K+    +K K
Sbjct: 181 EIMGKMFNGSKKTK 194


>gi|32476155|ref|NP_869149.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopirellula
           baltica SH 1]
 gi|46576445|sp|Q7UKU7|CLPX_RHOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|32446699|emb|CAD76535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula
           baltica SH 1]
          Length = 466

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 71/316 (22%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + E++IE        SN  + G    G   L+   ++++          ++ +       
Sbjct: 155 NGEVEIEK-------SNILLAGPTGSGKTLLARSLARMLNVPFAIGDATTLTEAGYVGED 207

Query: 222 DESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            E+   +L+       ++ Q     GI+++DE DKI + +    I   VS EGVQ+ LL 
Sbjct: 208 VENLLLKLLHAADFDVEAAQR----GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLK 263

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  +            +Y  ++T +ILFI  G F                      
Sbjct: 264 MLEGTVANVPPQGGRKHPEQQYIQLDTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGA 323

Query: 305 ---HVSRPAD--------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
              +   P +              L+PE+ GR PV  +L+ L+      +LT+ +++L+ 
Sbjct: 324 NVRNEQTPGELVAQVQTEDILKFGLIPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVK 383

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L   E   L+FTE+++ A+A  AV+       +GAR L+ +ME V+ DI +   + 
Sbjct: 384 QYQALFAMENCELEFTEEALHAIAKKAVDKG-----VGARGLRGIMEDVMLDIMYDLPEQ 438

Query: 408 QEKTV-VIDAEYVRLH 422
           +   V  ID   V   
Sbjct: 439 EAGKVYTIDEAIVTGK 454



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGPTGV 64
           SPR IV  LD Y+IGQ  AKR +A+A+ N ++R    AD      E+   NILL GPTG 
Sbjct: 114 SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 173

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V  ++R     
Sbjct: 174 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 233

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV +  S N    I   + G+    +  ++    + +          E      D SN 
Sbjct: 234 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 293

Query: 180 -DIPGGASVGILNL 192
             I GG  VGI  +
Sbjct: 294 LFICGGTFVGIEEI 307


>gi|308271900|emb|CBX28508.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured
           Desulfobacterium sp.]
          Length = 414

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 147/375 (39%), Gaps = 72/375 (19%)

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           + +     E     V +Q     ++ +++    K   S       K+L          DI
Sbjct: 48  EESDKTTVEQETLLVPKQIKEMLDDYVIEQDYAKKILSVAVYNHYKRLNS--------DI 99

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
              +     SN  + G    G   +++  ++ +          S+ +        E+  L
Sbjct: 100 SAGNVELQKSNILLIGPTGTGKTLMAQTLARFLNVPFTIADATSLTEAGYVGEDVENIIL 159

Query: 228 IDMDTVHRDSIQMVENY--GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
               ++ +++   VE    GIV++DE DKI A+     I   VS EGVQ+ LL ++EG++
Sbjct: 160 ----SLLQNADYDVEKCKRGIVYIDEIDKIAAKSENPSITRDVSGEGVQQALLKIIEGTT 215

Query: 284 VSTK-----------YGSINTDHILFIASGAFH--------------------------- 305
            S             +  ++T +ILFI  G F+                           
Sbjct: 216 ASVPPKGGRKHPQQDFVKVDTMNILFICGGTFNGLDQIIQKRFGSKSMGFGAKISGKENK 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                  + +P DL+     PE  GR PV   L  L++     ILT+ ++ LI Q+K+L 
Sbjct: 276 SKSELLKLVQPEDLIKFGLIPEFLGRLPVVASLDELSEETLIRILTEPKNALINQFKKLF 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + EGI L FT+ ++ A+A  A    S     GAR L+ V+E  L DI +    ++  K  
Sbjct: 336 EMEGINLRFTDSALSAIAKEAQKRKS-----GARGLRAVLESCLLDIMYEIPSIKNVKEC 390

Query: 413 VIDAEYVRLHIGDFP 427
           VI  + +        
Sbjct: 391 VISEDVINNKEEPIL 405



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 16/291 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
             P++I   LD Y+I Q  AK+ +++A+ N ++R     +    EL   NILL+GPTG G
Sbjct: 61  LVPKQIKEMLDDYVIEQDYAKKILSVAVYNHYKRLNSDISAGNVELQKSNILLIGPTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR    PF   + T  TE GYVG +VE II  L+  A   V + +R     D
Sbjct: 121 KTLMAQTLARFLNVPFTIADATSLTEAGYVGEDVENIILSLLQNADYDVEKCKRGIVYID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A+ +    I   + G+       ++                 +      D  N  
Sbjct: 181 EIDKIAAKSENPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQDFVKVDTMNIL 240

Query: 180 DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
            I GG   G+  + +    SK MG G K   + +  K        E  +L+  + + +  
Sbjct: 241 FICGGTFNGLDQIIQKRFGSKSMGFGAKISGKENKSKS-------ELLKLVQPEDLIKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   D++        +   +  +      L E   ++ ++
Sbjct: 294 LIPEFLGRLPVVASLDELSEETLIRILTEPKNALINQFKKLFEMEGINLRF 344


>gi|312869037|ref|ZP_07729214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           oris PB013-T2-3]
 gi|311095463|gb|EFQ53730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           oris PB013-T2-3]
          Length = 416

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 60/317 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  +  +  E  +T    SN  + G    G   L++  ++++          ++ +    
Sbjct: 94  KRVNAMMTGENDETELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + ++ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENIILKLLQAADFDVERAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF----HVSR------------- 308
            ++EG+  +            ++  ++T +ILFI  GAF    ++ +             
Sbjct: 212 KILEGTVANVPPQGGRKHPQQEFIQVDTSNILFIVGGAFDGIENIVKERIGEKTIGFGTS 271

Query: 309 -----------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                            P DL     +PE  GR PV   L+ L++ D   ILT+ ++ L+
Sbjct: 272 SSARDNITEKNILQHVIPEDLLKFGLIPEFIGRLPVMTALQKLDEQDLIWILTEPKNALV 331

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY+EL+K +G  L FT+ ++ A+A++A+  N+     GAR L++++E V++D+ F    
Sbjct: 332 KQYQELIKLDGSELSFTDGALRAMAELAIKRNT-----GARGLRSIIEEVMQDVMFDLPS 386

Query: 407 LQEK-TVVIDAEYVRLH 422
            ++   VVI    V  H
Sbjct: 387 REDVAKVVIGKRCVTDH 403



 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
           +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R        +   EL   NI ++GPTG 
Sbjct: 63  TPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENDETELQKSNIAVIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  + +     
Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDVERAEKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    + +          +      D SN 
Sbjct: 183 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQVDTSNI 242

Query: 180 -DIPGGASVGILNL 192
             I GGA  GI N+
Sbjct: 243 LFIVGGAFDGIENI 256


>gi|227512156|ref|ZP_03942205.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227524114|ref|ZP_03954163.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
 gi|227084550|gb|EEI19862.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri
           ATCC 11577]
 gi|227088745|gb|EEI24057.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii
           ATCC 8290]
          Length = 418

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 146/366 (39%), Gaps = 71/366 (19%)

Query: 123 REQASINAEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVADTSSD 175
            E A     E +L  L          E         R          K ++  ++D + D
Sbjct: 51  EELAPEKTSEDLLKVLTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDD 110

Query: 176 I----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +    SN  + G    G   L++  +K++          ++ +    +  D  + L+ + 
Sbjct: 111 LELQKSNICVIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG-YVGEDVENILLKLL 169

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 +   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 170 QNADYDVDKAEK-GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 228

Query: 287 --------KYGSINTDHILFIASGAF---------------------------------- 304
                   ++  I+T +ILFI  GAF                                  
Sbjct: 229 GGRKHPQQEFIQIDTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKNVNSKNIM 288

Query: 305 HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P D     L+PE  GR P+   L  L++ D   ILT+ ++ L+ QY++L++ +G  
Sbjct: 289 QSVIPEDMLKFGLIPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAE 348

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+F   ++  +A +A++ N+     GAR L++++E V+ DI F      +   V+I  E 
Sbjct: 349 LEFQPAALQKMAQLAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSKVIITPET 403

Query: 419 VRLHIG 424
           V  H  
Sbjct: 404 VTNHTE 409



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 9/195 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R        +   EL   NI ++GPTG
Sbjct: 66  LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +    
Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVDKAEKGIIY 185

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +          +      D +N
Sbjct: 186 IDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTN 245

Query: 179 F-DIPGGASVGILNL 192
              I GGA  GI  +
Sbjct: 246 ILFIVGGAFDGIEGI 260


>gi|182417594|ref|ZP_02948916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum 5521]
 gi|237668486|ref|ZP_04528470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378549|gb|EDT76078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum 5521]
 gi|237656834|gb|EEP54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 429

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 65/329 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    +  +ID+E++ +     N  + G    G   L++  +K +          ++
Sbjct: 90  NHYKRINTNKDDIDVELSKS-----NILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKLIQNADYDVEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  S            ++  INT +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGVDKIIEGRTRKSS 262

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  PADL     +PE  GR P+ V L+SLNK     ILT 
Sbjct: 263 MGFGADIQSKHEKDVGQLFKEIMPADLLKFGLIPEFVGRLPILVTLESLNKEALIEILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QYK+L + + + LDF + ++ A+A  A++  +     GAR L+ ++E ++ +I
Sbjct: 323 PKNALVKQYKKLFELDDVKLDFEDGALTAIAAEAISRQT-----GARGLRAIIEDIMNEI 377

Query: 401 SFSAS-DLQEKTVVIDAEYVRLHIGDFPS 428
            +    D +   V+I  E ++        
Sbjct: 378 MYEIPCDNRITKVIITEETIKNKKDPIVE 406



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 7/194 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGK 66
            P EI   LD Y++GQ  AK+++A+A+ N ++R     D +  EL   NILL+GPTG GK
Sbjct: 62  KPNEIKEYLDSYVVGQDRAKKSLAVAVYNHYKRINTNKDDIDVELSKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 122 TLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 242 ICGGAFDGVDKIIE 255


>gi|240146205|ref|ZP_04744806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|257201661|gb|EEU99945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia
           intestinalis L1-82]
 gi|291536690|emb|CBL09802.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis M50/1]
 gi|291537974|emb|CBL11085.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia
           intestinalis XB6B4]
          Length = 423

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V+          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAG-YVGEDVENILLKIIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 NIERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              +   I+T +ILFI  GAF                                    + P
Sbjct: 233 PQQELIQIDTTNILFICGGAFDGLEKIIETRMDQKTIGFNADIRDKRDYNIGDVLKHALP 292

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV V L  L++     IL + ++ L  QY++L + +G+ LDF +
Sbjct: 293 QDFVKFGLIPEFIGRVPVTVSLDMLDRDALIRILQEPKNALTKQYQKLFELDGVALDFDK 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME V  D+ +    D       I  E V   +
Sbjct: 353 EALEAIADKALERKT-----GARGLRAIMEAVTLDLMYHIPSDESITQCQITKEMVDEQL 407

Query: 424 G 424
            
Sbjct: 408 A 408



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P E+ + LD Y+IGQ  AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 68  LKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNILMLGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  ++  A   +  ++R     DE
Sbjct: 128 TLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIERAQRGIIYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 188 IDKISKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQIDTTNILF 247

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 248 ICGGAFDGLEKIIE 261


>gi|239979445|ref|ZP_04701969.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces albus
           J1074]
 gi|291451315|ref|ZP_06590705.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
           J1074]
 gi|291354264|gb|EFE81166.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus
           J1074]
          Length = 428

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 60/310 (19%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +    +  D  + L+ +    
Sbjct: 114 GKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAA 172

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S       
Sbjct: 173 DYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGR 231

Query: 287 -----KYGSINTDHILFIASGAF----------------------------------HVS 307
                ++  I+T ++LFI  GAF                                     
Sbjct: 232 KHPHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEEKDQFQEV 291

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF
Sbjct: 292 MPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDF 351

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
             ++++A+AD A+   +     GAR L+ +ME VL  + +     ++   VVI AE V+ 
Sbjct: 352 EREALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITAEVVQS 406

Query: 422 HIGDFPSETD 431
           ++       D
Sbjct: 407 NVNPTLIPRD 416



 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGQNGAPGGREDAIELGKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +  +  + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEEKDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|187933551|ref|YP_001887075.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum B str. Eklund 17B]
 gi|238691649|sp|B2TPB8|CLPX_CLOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|187721704|gb|ACD22925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum B str. Eklund 17B]
          Length = 429

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +KV+          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKVLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 DVERAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTSNILFICGGAFDGVDKIIENRTRKSSMGFGAQIQGKHEKDIGKLLKEIMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L+SL+K     ILT  ++ L+ QYK+L + + + L+F  
Sbjct: 287 GDLLKFGLIPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNN 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +++ ++A+ A+   +     GAR L+ ++E ++ +I +    D Q   V I  E ++  
Sbjct: 347 EALTSIAEEAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVTITEECIKDK 400



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ+ AK+++++A+ N ++R      D   EL   NILL+GPTG GK
Sbjct: 62  KPNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     DE
Sbjct: 122 TLLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA  G+  + E  ++    G   +I+   +K   +L+++
Sbjct: 242 ICGGAFDGVDKIIENRTRKSSMGFGAQIQGKHEKDIGKLLKE 283


>gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus
           UQM 2246]
          Length = 433

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 67/325 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               K+L     S  E++IE        SN    G    G   L+   +K++        
Sbjct: 108 HNHYKRLSLDPASRHEVEIEK-------SNILFVGPTGSGKTLLARTLAKILDVPFAIGD 160

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
             ++ +    +  D  + L+ +       I+  +  GI+++DE DKI        I   V
Sbjct: 161 ATTLTEAG-YVGEDVENLLLKLLHAADFDIEAAQ-RGIIYIDEIDKIAKTSQNVSITRDV 218

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HV 306
           S EGVQ+ LL ++EG+  +            +Y  ++T +ILFI  G F          +
Sbjct: 219 SGEGVQQALLKMLEGTVSNVPPQGGRKHPEQQYIQVDTSNILFICGGTFVGLEDIISRRL 278

Query: 307 SRPA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRL 336
            R +                               ++PE  GR PV   L  L++     
Sbjct: 279 GRKSIGFGAVDQEQREKSLGELLSQVTADDLIEFGMIPEFVGRLPVLAPLDPLDEEAMLR 338

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ L+ QY++L + EG  ++F  +++  +A +A        D GAR L+ ++E V
Sbjct: 339 ILTEPKNALVRQYQKLFEMEGAEVEFEINALKEIARLAKAR-----DTGARGLRAIVEDV 393

Query: 397 LEDISFSASDLQEK-TVVIDAEYVR 420
           + D+ +   +++ K   VI AE VR
Sbjct: 394 MLDVMYDLPEMEHKGKHVITAEVVR 418



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 9/230 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPTGVGK 66
           PR I  +LD Y+IGQQ AK+ +++A+ N ++R  L    R   E+   NIL VGPTG GK
Sbjct: 82  PRTIKEKLDGYVIGQQRAKKVLSVAVHNHYKRLSLDPASRHEVEIEKSNILFVGPTGSGK 141

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R LA++   PF   + T  TE GYVG +VE ++  L+  A   +  ++R     DE
Sbjct: 142 TLLARTLAKILDVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDIEAAQRGIIYIDE 201

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    + +          E      D SN   
Sbjct: 202 IDKIAKTSQNVSITRDVSGEGVQQALLKMLEGTVSNVPPQGGRKHPEQQYIQVDTSNILF 261

Query: 181 IPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I GG  VG+ + +S    +              +     L +  +D LI+
Sbjct: 262 ICGGTFVGLEDIISRRLGRKSIGFGAVDQEQREKSLGELLSQVTADDLIE 311


>gi|1296452|emb|CAA64618.1| ClpX protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 420

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 63/306 (20%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +        E+  L
Sbjct: 101 KVDDVELSQSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL 160

Query: 228 IDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
                + + +   VE    GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 161 ----ELIQAADYDVEKTGKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
            S            ++  I+T +ILFI  GAF                            
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLE 276

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DLL     PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++
Sbjct: 277 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            + + L+F E+++  +A  A+   +     GAR L++++E ++ D+ F      + +  V
Sbjct: 337 LDNVELEFEEEALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCV 391

Query: 414 IDAEYV 419
           I    V
Sbjct: 392 ITGATV 397



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----RRDE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A   V ++       DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAADYDVEKTGKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 243 ICGGAFDGIEQI 254


>gi|89895950|ref|YP_519437.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670383|ref|YP_002460818.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfitobacterium
           hafniense DCB-2]
 gi|122997224|sp|Q24SJ9|CLPX_DESHY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763844|sp|B8FVI0|CLPX_DESHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89335398|dbj|BAE84993.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540643|gb|ACL22382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 60/318 (18%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +++ D     SN  + G    G   L+   +KV+          S+ +    +  D  + 
Sbjct: 100 MKIDDVELQKSNIVMLGPTGSGKTLLASTLAKVLNVPFAIADATSLTEAG-YVGEDVENI 158

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L+ +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 159 LLKLIQAADYDVEKAEK-GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 217

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           S            ++  ++T +ILFI  GAF                             
Sbjct: 218 SVPPQGGRKHPHQEFIQLDTTNILFIVGGAFDGIDKIIQNRIGKKVMGFGAEIKKKSEQN 277

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    PADL     +PE  GR PV V L +L++     ILT+ ++ L+ QY++L++
Sbjct: 278 IGETLRELLPADLLKFGLIPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLE 337

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VV 413
            +G+ L+F E+++ A+A+ A+  N+     GAR L+ ++E +++++ +      + T  V
Sbjct: 338 LDGVALEFKEEALKAIAEEAIRRNT-----GARGLRAIVEEIMQNVMYDLPSRNDVTKCV 392

Query: 414 IDAEYVRLHIGDFPSETD 431
           +  + +           D
Sbjct: 393 VTKDVILKKEEPLLVTID 410



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 9/218 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M++     P+EI + LD+Y+IGQ +AK+A+A+A+ N ++R  L   + D EL   NI+++
Sbjct: 56  MEIGDIPKPKEIRAILDQYVIGQDEAKKALAVAVYNHYKRINLGMKIDDVELQKSNIVML 115

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 116 GPTGSGKTLLASTLAKVLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 175

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235

Query: 175 DISNFDIPGGASVGILN---LSELFSKVMGSGRKKKIR 209
           D +N     G +   ++    + +  KVMG G + K +
Sbjct: 236 DTTNILFIVGGAFDGIDKIIQNRIGKKVMGFGAEIKKK 273


>gi|319404100|emb|CBI77690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 398

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 88  SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQSADY 146

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 147 NVERAQ-RGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 205

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 206 PQQEFLQVDTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEP 265

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   L+ L+      IL+  ++ L+ QY+ L + E + L F E
Sbjct: 266 EDLIKFGLIPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHE 325

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D++  +A  A+   +     GAR L+++MER+L +  F    L   + VVI ++ V   
Sbjct: 326 DALRVIAKKAIERKT-----GARGLRSIMERILLNTMFELPALIGVQEVVISSDVVEGK 379



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R    +   D EL   NILLVGPTG GK
Sbjct: 41  TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 100

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDE 160

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-- 179
           V + +       I   + G+       ++    +            +      D +N   
Sbjct: 161 VDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 220

Query: 180 ---DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  G    I    E  S    +  K      V + + +L  ++  + 
Sbjct: 221 ICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKF 271


>gi|294812616|ref|ZP_06771259.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325215|gb|EFG06858.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 464

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 153 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 211

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 212 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 270

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 271 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 330

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 331 EDLVKFGMIPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDR 390

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 391 PALEAIADQAILRGT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 445

Query: 424 G 424
            
Sbjct: 446 N 446



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 100 KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLG 159

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 160 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 219

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 220 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 271

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +     + E+M +
Sbjct: 272 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPE 331

Query: 223 ESDRL 227
           +  + 
Sbjct: 332 DLVKF 336


>gi|317133440|ref|YP_004092754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
 gi|315471419|gb|ADU28023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ethanoligenens harbinense YUAN-3]
          Length = 436

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 132/305 (43%), Gaps = 60/305 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E +D     SN  + G   VG   L++  + ++          ++ +    +  D  + L
Sbjct: 104 ETSDVDLQKSNILLLGPTGVGKTMLAQTLAHILKVPFAIADATTLTEAG-YVGEDVENIL 162

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +
Sbjct: 163 LRLIQAADYDVERAE-HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVSN 221

Query: 286 T-----------KYGSINTDHILFIASGAFH----------VSR---------------- 308
                       ++  INT  ILFI  GAF           VS+                
Sbjct: 222 VPPMGGRKYPHQEFIQINTKDILFICGGAFDGLDKIIEKRTVSKALGFGADVRGKKEKAG 281

Query: 309 --------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE+ GR PV   L +L++     ILT+ ++ ++ QY +L + 
Sbjct: 282 INIFKNAIPQDLVHFGLIPELVGRIPVITTLNALDRKALIRILTEPKNAIVKQYIKLFEM 341

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           +G+ L F E +++A+AD A+   +     GAR L+ +ME +L  + F    D     + I
Sbjct: 342 DGVQLVFDESALNAIADKAIARET-----GARGLRAIMEDLLTAVMFDVPSDGTIAKITI 396

Query: 415 DAEYV 419
             + V
Sbjct: 397 TGDCV 401



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 12/210 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI   LD+Y++GQ+DAK A+++A+ N ++R         +L   NILL+GPTGVGKT 
Sbjct: 68  PKEINEILDQYVVGQEDAKVALSVAVYNHYKRIYYGETSDVDLQKSNILLLGPTGVGKTM 127

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LA +   PF   + T  TE GYVG +VE I+  L+  A   V  +    +      
Sbjct: 128 LAQTLAHILKVPFAIADATTLTEAGYVGEDVENILLRLIQAADYDVERAEHGIIY----- 182

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              + I          S TR+V  + ++   +   E  +        +     P    + 
Sbjct: 183 --IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV---SNVPPMGGRKYPHQEFIQ 237

Query: 189 ILNLSELF--SKVMGSGRKKKIRMSVQKCY 216
           I     LF          K   + +V K  
Sbjct: 238 INTKDILFICGGAFDGLDKIIEKRTVSKAL 267


>gi|152967458|ref|YP_001363242.1| ATP-dependent protease ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
 gi|189044138|sp|A6WDT9|CLPX_KINRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|151361975|gb|ABS04978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kineococcus
           radiotolerans SRS30216]
          Length = 430

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 65/326 (19%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R ++ +     +E  +E++ +     N  + G    G   L++  +K++          +
Sbjct: 95  RIQVGEPSTKGREDAVEISKS-----NILLIGPTGCGKTYLAQTLAKMLNVPFAIADATA 149

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSRE 269
           + +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS E
Sbjct: 150 LTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKIARKSENPSITRDVSGE 207

Query: 270 GVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------- 304
           GVQ+ LL ++EG++ S            ++  I+T ++LFI  GAF              
Sbjct: 208 GVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLDRIIEARSGKQ 267

Query: 305 -------------HVSRPA------------DLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                          + P+             L+PE  GR P+   +++L++     ILT
Sbjct: 268 GLGFGAQLRSTTEKKAEPSFADVMPEDLMKFGLIPEFIGRLPIITSVENLDQEALVQILT 327

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
              + L  QY+ + + +G+ L+FT+D+++A+AD A+   +     GAR L+ ++E VL  
Sbjct: 328 KPRNALAKQYQRMFELDGVELEFTDDALEAVADQAILRGT-----GARGLRAIIEEVLLP 382

Query: 400 ISFSASDLQE-KTVVIDAEYVRLHIG 424
           + F      +   VV+  E V  ++ 
Sbjct: 383 VMFDVPSRDDIARVVVTREVVLKNVN 408



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 11/195 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGP 61
            P+EI   LD+Y+IGQ  AK+++A+A+ N ++R Q+        +   E+   NILL+GP
Sbjct: 63  KPKEIFDFLDQYVIGQSSAKKSLAVAVYNHYKRIQVGEPSTKGREDAVEISKSNILLIGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR--- 118
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 123 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 182

Query: 119 --RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A  +    I   + G+       ++                        D 
Sbjct: 183 IYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDT 242

Query: 177 SNFDIPGGASVGILN 191
           +N     G +   L+
Sbjct: 243 TNVLFIVGGAFAGLD 257


>gi|76581159|gb|ABA50634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
          Length = 466

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 79/359 (22%)

Query: 134 ILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           ILD   +  + A            +  +  DK+ D+E++ +     N  + G    G   
Sbjct: 118 ILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTL 172

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYG 245
           L++  ++++          ++ +              D++ + +  +Q           G
Sbjct: 173 LAQTLARLLNVPFVIADATTLTEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRG 224

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSIN 292
           IV++DE DKI  +     I   VS EGVQ+ LL LVEG+  S             +  ++
Sbjct: 225 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVD 284

Query: 293 TDHILFIASGAF----------------------------------HVSRPADLL----- 313
           T +ILFI  GAF                                      P DL+     
Sbjct: 285 TTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLI 344

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L  L+++    IL + ++ L+ QY++L   E + L+   D++ A+A  
Sbjct: 345 PELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARK 404

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           A+   +     GAR L++++E+ L D+ +    L+    V+ID   +           D
Sbjct: 405 AIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIYED 458



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 111 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 170

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 171 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 230

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 231 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 290

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 291 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 339


>gi|295395009|ref|ZP_06805221.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972168|gb|EFG48031.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 419

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 142/325 (43%), Gaps = 64/325 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   +  DK  D+E+A +     N  + G    G   +++  +K +          
Sbjct: 91  HYKRINAMQSGDK-PDVEIAKS-----NILMVGPTGSGKTYVAQTLAKKLNVPFAVADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS 
Sbjct: 145 SLTEAG-YVGEDVENILLKLLQAADFDVERAQT-GIIYIDEIDKISRKAENPSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFHVSR--------- 308
           EGVQ+ LL ++EG+  S            ++  ++T ++LFI +GAF             
Sbjct: 203 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQLDTTNVLFIVAGAFAGLEEIISARKGK 262

Query: 309 -----------------------PAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P D     L+PE  GR PV   L +L++     ILT+
Sbjct: 263 HGIGFGALIQSKEDNVNHFEDLLPEDLLKFGLIPEFIGRVPVIATLDNLDREALIAILTE 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + L+ QY+ +   +G+ L+F  ++++A+AD+A+   +     GAR L++++E VL+ I
Sbjct: 323 PRNALVKQYQAMFNMDGVELEFEHEALEAIADLALLRET-----GARGLRSILEEVLQPI 377

Query: 401 SFSASDLQE-KTVVIDAEYVRLHIG 424
            F      + + VVI  + V  ++ 
Sbjct: 378 MFELPSRDDIERVVITKDVVSSNVA 402



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 21/158 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGV 64
            P++I   L+ +++GQ  AKRA+++A+ N ++R    Q       E+   NIL+VGPTG 
Sbjct: 62  KPQDIFDHLNDFVVGQASAKRALSVAVYNHYKRINAMQSGDKPDVEIAKSNILMVGPTGS 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR------ 118
           GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  ++      
Sbjct: 122 GKTYVAQTLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAADFDVERAQTGIIYI 181

Query: 119 --RDEVREQAS----------INAEERILDALVGKTAT 144
              D++  +A              ++ +L  L G  A+
Sbjct: 182 DEIDKISRKAENPSITRDVSGEGVQQALLKILEGTQAS 219


>gi|188590512|ref|YP_001921997.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778366|ref|ZP_04821286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|238691974|sp|B2UX12|CLPX_CLOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|188500793|gb|ACD53929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082681|gb|EES48571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 429

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +KV+          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKVLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 DVERAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTSNILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKHEKDIGKLLKEIMP 286

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L+SL+K     ILT  ++ L+ QYK+L + + + L+F  
Sbjct: 287 GDLLKFGLIPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNN 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           +++ ++A+ A+   +     GAR L+ ++E ++ +I +    D Q   V+I  E ++  
Sbjct: 347 EALTSIAEEAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIKDK 400



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ+ AK+++++A+ N ++R      D   EL   NILL+GPTG GK
Sbjct: 62  KPNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     DE
Sbjct: 122 TLLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA  G+  + E  ++    G   +I+   +K   +L+++
Sbjct: 242 ICGGAFDGVDKIIENRTRKSSMGFGAEIQGKHEKDIGKLLKE 283


>gi|291557794|emb|CBL34911.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           siraeum V10Sc8a]
          Length = 430

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 73/349 (20%)

Query: 132 ERILDA-LVGKTATSNT-----REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           ++ILD  ++G+     T        ++K     E +  EI+++        SN  + G  
Sbjct: 67  KKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQK-------SNVLLLGPT 119

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG   +++  + V+          ++ +    +  D  + L+ +       I+  E +G
Sbjct: 120 GVGKTMIAQTLANVLKVPFAIADATTLTQAG-YVGEDVENVLLRLIQAADYDIEAAE-HG 177

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           I+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  IN
Sbjct: 178 IIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQIN 237

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T +ILFI  GAF                                  H   P DL     +
Sbjct: 238 TKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFGII 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+ T+D++ A+A  
Sbjct: 298 PELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIAKK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           A    +     GAR L+TV+E  L DI F+A  D     V++  E V  
Sbjct: 358 AAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECVTD 401



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
            P E+   LD+YIIGQ +AK+ + +++ N +++     +      EL   N+LL+GPTGV
Sbjct: 62  KPTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQKSNVLLLGPTGV 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A   +  +       
Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAADYDIEAAEHGIIYI 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ +    +    I   + G+       ++    + +                 +  N 
Sbjct: 182 DEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQINTKNI 241

Query: 180 DIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               G +   ++   +    S  +G G + K +    K    L + E + L+
Sbjct: 242 LFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQD-NKINEALHQVEPEDLV 292


>gi|284097336|ref|ZP_06385466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283831155|gb|EFC35135.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 419

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 145/365 (39%), Gaps = 71/365 (19%)

Query: 113 IVRESRRDEVREQASINA--EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
             ++    ++R+ A IN   ++ I+D    K   S       K++   E  D E+     
Sbjct: 52  ETKDEISSKLRKPAEINRHLDQYIIDQTRAKKILSVAVHNHYKRIAASETGDVEL----- 106

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                  N  + G    G   L++  +  +          ++ +    +  D  + ++ +
Sbjct: 107 ----QKGNILMIGPTGTGKTLLAQTLADYLDVPFTLADATTLTEAG-YVGEDVENIILKL 161

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
                  ++  E  GI+++DE DKI  +  G  I   VS EGVQ+ LL L+EG+  +   
Sbjct: 162 LQAADYEVERAE-RGIIYIDEIDKITRKADGPSITRDVSGEGVQQALLKLIEGTVANVPP 220

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    ++  ++T +IL I  GAF                                 
Sbjct: 221 QGGRKHPHQEFIQVDTKNILVICGGAFVGLEPIIERRLNQNRMGFKSDKSVSAQERPSSL 280

Query: 305 -HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
               +P D     L+PE  GR PV   L+ L++     IL + ++ L  QY++L+  + +
Sbjct: 281 LAQIQPEDLLHYGLIPEFIGRLPVVTTLEELDERALTRILIEPKNALTKQYQKLLSFDKV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAE 417
            L FT+ ++ A+A  A    +     GAR L+ +ME V+ DI +      + K VVI  +
Sbjct: 341 KLKFTDGALHAIASKAHAQKT-----GARGLRAIMEEVMLDIMYEVPSQTEIKEVVITED 395

Query: 418 YVRLH 422
            +   
Sbjct: 396 VILKK 400



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 62/112 (55%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI   LD+YII Q  AK+ +++A+ N ++R         EL   NIL++GPTG GKT
Sbjct: 63  KPAEINRHLDQYIIDQTRAKKILSVAVHNHYKRIAASETGDVELQKGNILMIGPTGTGKT 122

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
            +++ LA     PF   + T  TE GYVG +VE II  L+  A   V  + R
Sbjct: 123 LLAQTLADYLDVPFTLADATTLTEAGYVGEDVENIILKLLQAADYEVERAER 174


>gi|269837421|ref|YP_003319649.1| Sigma 54 interacting domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786684|gb|ACZ38827.1| Sigma 54 interacting domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 419

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 63/299 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  +K++          ++ +        E+   RLI      
Sbjct: 112 SNILLLGPTGSGKTLLAQTLAKLLDVPFSIADATALTEAGYVGEDVENILLRLIQ----A 167

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              +Q  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +       
Sbjct: 168 AGDVQRAQT-GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGR 226

Query: 287 -----KYGSINTDHILFIASGAF--------------------------------HVSRP 309
                +Y  I+T +ILFI  GAF                                H  + 
Sbjct: 227 KHPHQEYIQIDTRNILFICGGAFEGLEDIVRRRLGREATLGFGAPLRTERQESVLHHVQQ 286

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV V L  L + +   IL + ++ ++ QY++++K + + L FT+
Sbjct: 287 EDLLKYGLIPEFVGRLPVVVALDHLTRDELARILVEPKNAVVKQYQKMLKLDDVELVFTQ 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           D+++A AD A+   +     GAR L+T +E VL D+ +    L+  +  +I+A+ +   
Sbjct: 347 DALEAAADYALKRGT-----GARGLRTTIEEVLLDVMYEIPSLEGVRKCIINADVINRR 400



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 5/190 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P+ +  +L  Y+IGQ  AK+ +++A+ N ++R   P D   EL   NILL+GPTG GKT
Sbjct: 66  TPKALYEQLSNYVIGQDRAKKILSVAVYNHYKRITAPNDDDVELQKSNILLLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES----RRDEVR 123
            +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A ++ R        DE+ 
Sbjct: 126 LLAQTLAKLLDVPFSIADATALTEAGYVGEDVENILLRLIQAAGDVQRAQTGIIYIDEID 185

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIP 182
           + A       I   + G+       ++    + +                 D  N   I 
Sbjct: 186 KIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEYIQIDTRNILFIC 245

Query: 183 GGASVGILNL 192
           GGA  G+ ++
Sbjct: 246 GGAFEGLEDI 255


>gi|296139186|ref|YP_003646429.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Tsukamurella
           paurometabola DSM 20162]
 gi|296027320|gb|ADG78090.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tsukamurella
           paurometabola DSM 20162]
          Length = 425

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 66/327 (20%)

Query: 151 FRKKLRDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             K+++ GE  D   + +E+A +     N  + G    G   L++  +K++         
Sbjct: 92  HYKRIQAGERKDARGESVELAKS-----NILMLGPTGCGKTYLAQTLAKMLNVPFAIADA 146

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVS 267
            ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS
Sbjct: 147 TALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVS 204

Query: 268 REGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVS 307
            EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          + 
Sbjct: 205 GEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKVVGDRIG 264

Query: 308 R-------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLI 337
           +                         P DL+     PE  GR PV   + +L+K     I
Sbjct: 265 KRGLGFGTEVRSKAEVDTVDHFADVLPEDLIKFGLIPEFIGRLPVIASVSNLDKESLVSI 324

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L++ ++ L+ QY+ L + +G+ L+F ED++ A+AD A+   +     GAR L+ +ME VL
Sbjct: 325 LSEPKNALVKQYERLFEMDGVELEFDEDALGAIADQAILRGT-----GARGLRAIMEEVL 379

Query: 398 EDISFSASDLQEK-TVVIDAEYVRLHI 423
             + F      +   VV+  E VR ++
Sbjct: 380 NPVMFDIPSRDDVAKVVVTGETVRDNV 406



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKN 55
           +KL     P EI   LD Y+IGQ  AKR +A+A+ N ++R Q            EL   N
Sbjct: 56  VKLDELPKPVEIRDFLDNYVIGQDSAKRNLAVAVYNHYKRIQAGERKDARGESVELAKSN 115

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           IL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 116 ILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVK 175

Query: 116 ESR-----RDEVREQASI 128
            +       DEV + A  
Sbjct: 176 RAETGIIYIDEVDKIARK 193


>gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
 gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia
           hansenii DSM 20583]
          Length = 456

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 60/309 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 132 SNILMLGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVENILLKIIQAADY 190

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  + YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  S         
Sbjct: 191 DIERAQ-YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKH 249

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T +ILFI  GAF                                      P
Sbjct: 250 PQQEFIQIDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMP 309

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L +L+K+    ILT+ +++L+ QY+ L   +GI L+F  
Sbjct: 310 QDLVKFGLIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEG 369

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           ++++A+AD ++   +     GAR L+ +ME  + D+ ++A  D    +  I  + V    
Sbjct: 370 EALEAIADKSMERKT-----GARGLRAIMENSMMDLMYTAPSDDSIVSCTITKDVVDGTG 424

Query: 424 GDFPSETDM 432
                  ++
Sbjct: 425 EALVERREL 433



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 10/231 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R     +   EL   NIL++GPTG GK
Sbjct: 85  LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 144

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  ++  A   +  ++      DE
Sbjct: 145 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYDIERAQYGIIYIDE 204

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++    +            +      D +N   
Sbjct: 205 IDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQIDTTNILF 264

Query: 182 PGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +   L+       +  +    +  + K   +V +   E+M  +  + 
Sbjct: 265 ICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKF 315


>gi|213610197|ref|ZP_03370023.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 275

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++ + +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+E
Sbjct: 9   DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE 68

Query: 281 GSSVST-----------KYGSINTDHILFIASGAF------------------------- 304
           G+  +            ++  ++T  ILFI  GAF                         
Sbjct: 69  GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKA 128

Query: 305 -----------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                          P DL+     PE  GR PV   L  L++     IL + ++ L  Q
Sbjct: 129 KSDKASEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQ 188

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L   EG+ L+F +++++A+A  A+   +     GAR L++++E  L D  +    ++
Sbjct: 189 YQALFNLEGVDLEFRDEALNAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSME 243

Query: 409 E-KTVVIDAEYV 419
           + + VVID   +
Sbjct: 244 DVEKVVIDESVI 255


>gi|220928260|ref|YP_002505169.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           cellulolyticum H10]
 gi|254763841|sp|B8I8F6|CLPX_CLOCE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219998588|gb|ACL75189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           cellulolyticum H10]
          Length = 431

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 60/310 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++  D     SN  + G    G   L++  +K++          S+ +    +  D  +
Sbjct: 99  DVKTTDIELQKSNIVMLGPTGSGKTFLAQTLAKILNVPFAIADATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 158 ILLRLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF----------------------HVSRPA 310
            S            ++  I+T +ILFI  GAF                        S+  
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESSKDK 276

Query: 311 D-----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           D                 L+PE  GR P+ V L+SL+K     ILT+ ++ L+ QY++L 
Sbjct: 277 DVGQLLKDILPQDLLKFGLIPEFVGRLPIVVTLQSLDKKALVQILTEPKNALVKQYQKLF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + + ++L+  +++++ +A+ A+  N+     GAR L+ ++E  +  + +    +   +  
Sbjct: 337 EMDDVLLEIQDEALEHIAEKAIERNT-----GARGLRAILEEAMLGVMYDIPSMTNVEKC 391

Query: 413 VIDAEYVRLH 422
           +I  E +  H
Sbjct: 392 IIGKEVIAEH 401



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y++GQ  AKR++++A+ N ++R        D EL   NI+++GPTG GK
Sbjct: 63  KPKEIKEILDQYVVGQDAAKRSLSVAVYNHYKRINSDVKTTDIELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +     DE
Sbjct: 123 TFLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAADYDIEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    L                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   ++  +     K       K      +     L       L+
Sbjct: 243 ICGGAFDGIDKIIQNRIGKKSLGFGAKIESSKDKDVGQLLKDILPQDLL 291


>gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp.
           JS614]
 gi|166214794|sp|A1SME0|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides
           sp. JS614]
          Length = 426

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 134/312 (42%), Gaps = 65/312 (20%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             KE  +EVA +     N  + G    G   L++  ++++          ++ +    + 
Sbjct: 107 HSKEEVVEVAKS-----NILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAG-YVG 160

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL +
Sbjct: 161 EDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKI 219

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAFH---------------------- 305
           +EG++ S            ++  I+T +ILF+  GAF                       
Sbjct: 220 IEGTTASVPPQGGRKHPHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVR 279

Query: 306 ------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                         RP DL     +PE  GR P+   +  L++     ILT+  + L+ Q
Sbjct: 280 GKAEREAEDLLAQVRPEDLTKFGLIPEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQ 339

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL- 407
           Y++L + +G+ L+FT D+I+A+AD A+   +     GAR L+ ++E VL  + +      
Sbjct: 340 YQKLFELDGVELEFTPDAIEAIADNALERGT-----GARGLRAIIEEVLLHVMYDVPSRG 394

Query: 408 QEKTVVIDAEYV 419
               V++  E V
Sbjct: 395 DIAKVIVTREVV 406



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 16/243 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDEL 51
           + L     P+EI   L+ Y+IGQ+ AK+++A+A+ N ++R Q            +   E+
Sbjct: 56  VSLDELPKPKEIFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPMSGKHSKEEVVEV 115

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NIL++GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A 
Sbjct: 116 AKSNILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAAD 175

Query: 112 NIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             V+++       DE+ + A       I   + G+       ++                
Sbjct: 176 YDVKKAETGIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKH 235

Query: 167 IEVADTSSDISNF-DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDES 224
                   D +N   + GGA  G+ ++ E    K       +    + ++    L +   
Sbjct: 236 PHQEFIQIDTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVRGKAEREAEDLLAQVRP 295

Query: 225 DRL 227
           + L
Sbjct: 296 EDL 298


>gi|323359782|ref|YP_004226178.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
 gi|323276153|dbj|BAJ76298.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium
           testaceum StLB037]
          Length = 422

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 65/336 (19%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           AL         R      L+  E   +EIDI         SN  + G    G   L++  
Sbjct: 86  ALAVAVYNHYKRVRSHGTLQPAEARAEEIDI-------AKSNILLLGPTGCGKTYLAQTL 138

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           +K +          ++ +    +  D  + L+ +       ++  E  GI+++DE DKI 
Sbjct: 139 AKRLNVPFAVADATALTEAG-YVGEDVENILLKLLQAADFDVKRAET-GIIYIDEVDKIA 196

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
            +     I   VS EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GA
Sbjct: 197 RKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVAGA 256

Query: 304 F--------------------------------HVSRPADL-----LPEIQGRFPVRVHL 326
           F                                  + P DL     +PE  GR PV   +
Sbjct: 257 FAGLEEIISARVGKHGVGFGAPLQRKEDAPDLFSEALPEDLHKFGLIPEFIGRLPVVASV 316

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L++     ILT   + L+ QY+ + + +G+ L+F ED++ A+AD+AV   +     GA
Sbjct: 317 SPLDQDALMEILTAPRNALVKQYQRMFELDGVQLEFDEDALRAIADLAVARKT-----GA 371

Query: 387 RRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           R L+ ++E VL  I F      +   VVI    V  
Sbjct: 372 RGLRAILEDVLGPIMFEVPSADDIAKVVITRAAVED 407



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDE---LMPKN 55
           F+   PREI S L+ Y++GQ+ AKRA+A+A+ N ++R +      PA+ R E   +   N
Sbjct: 61  FDLPKPREIFSFLEEYVVGQEPAKRALAVAVYNHYKRVRSHGTLQPAEARAEEIDIAKSN 120

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 121 ILLLGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAADFDVK 180

Query: 116 ESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            +       DEV + A       I   + G+       ++    +               
Sbjct: 181 RAETGIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 240

Query: 171 DTSSDISN 178
               D +N
Sbjct: 241 FIQIDTTN 248


>gi|302534404|ref|ZP_07286746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. C]
 gi|302443299|gb|EFL15115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. C]
          Length = 428

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL  + +     ++   VVI A+ VR ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +     + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|237750429|ref|ZP_04580909.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC
           43879]
 gi|229373959|gb|EEO24350.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC
           43879]
          Length = 428

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 60/335 (17%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A+         ++    K  +  ++  +++  V  + S   N  + G    G   +++  
Sbjct: 89  AIYNHYKRLLHQQRVAAKTDENIVNVTDLEENVELSKS---NILLIGPTGSGKTLMAQTL 145

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           ++ +          S+ +    +  D  + L  +       ++  E  GIVF+DE DKI 
Sbjct: 146 ARFLDIPIAISDATSLTEAG-YVGEDVENILTRLLQAADYDLKRAE-MGIVFIDEIDKIS 203

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
                  I   VS EGVQ+ LL ++EGS V+            ++  ++T +ILFI  GA
Sbjct: 204 RLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIKMDTSNILFICGGA 263

Query: 304 F--------------------------------HVSRPADL-----LPEIQGRFPVRVHL 326
           F                                H     DL     +PE+ GR  V   L
Sbjct: 264 FDGVEDIIKRKLGNNVLGFDSNPKQQADEDNILHKIETDDLVSFGLIPELIGRLHVIATL 323

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
            S++K     ILT  ++ +I QY++L + +G  L F +D+I+ +A++A+   +     GA
Sbjct: 324 DSISKEAMISILTQPKNAIIKQYQKLFELDGAKLVFEDDAIERIAELAMERKT-----GA 378

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           R L+ ++E    DI F   +L    V+I  + V  
Sbjct: 379 RGLRAIVEDFSLDIMFDLPNLSGYEVIITRKCVDK 413



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 27/245 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------------DLRDEL 51
           SP+E+ + LD Y++GQ+ AK+  ++A+ N ++R                     +   EL
Sbjct: 64  SPKELKAHLDEYVVGQEQAKKVFSVAIYNHYKRLLHQQRVAAKTDENIVNVTDLEENVEL 123

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A 
Sbjct: 124 SKSNILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAAD 183

Query: 112 NIVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             ++ +    V     ++ S  +E R I   + G+       ++    + +         
Sbjct: 184 YDLKRAEMGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 243

Query: 167 IEVADTSSDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                   D SN   I GGA  G+ ++   +L + V+G     K +         L + E
Sbjct: 244 PNQEFIKMDTSNILFICGGAFDGVEDIIKRKLGNNVLGFDSNPKQQ---ADEDNILHKIE 300

Query: 224 SDRLI 228
           +D L+
Sbjct: 301 TDDLV 305


>gi|55980585|ref|YP_143882.1| ATP-dependent protease ATP-binding subunit ClpX [Thermus
           thermophilus HB8]
 gi|81821887|sp|Q5SKM7|CLPX_THET8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|55771998|dbj|BAD70439.1| 'ATP-dependent protease Clp, ATPase subunit ClpX [Thermus
           thermophilus HB8]
          Length = 399

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 55/381 (14%)

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL--DALVGKTATSNTREVFRK 153
           GR +E  + D+      + R        E+ +     R+     +          +   K
Sbjct: 19  GRLLESPLEDVYICEDCVERAQEILAQEERRAPKGPSRLPRPQEIKAHLDQYVVGQEAAK 78

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           +     + +    +   +     +N  + G    G   L+E  ++ +          ++ 
Sbjct: 79  RALSVAVYNHYKRLLHPEAEIGKANILLIGPTGTGKTLLAETLARFLDVPFAIADATTLT 138

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGV 271
           +    +  D  + L+ +       ++  E  GIV++DE DKI  +         VS EGV
Sbjct: 139 EAG-YVGEDVENVLLRLLQNADFDVERAE-MGIVYIDEIDKIARKSENPSLTRDVSGEGV 196

Query: 272 QRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR--- 308
           Q+ LL ++EG+  +            ++  +NT +ILFI  GAF          V +   
Sbjct: 197 QQALLKIIEGTVANVPPQGGRKHPHQEFIPVNTKNILFILGGAFEGLENIVKARVGKTTI 256

Query: 309 ----------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL+     PE  GR P+ V L  L + D   ILT+ ++ L+ 
Sbjct: 257 GFTGGRREREEPLEVIPEDLIKFGMIPEFVGRAPLIVQLHPLTEDDLVRILTEPKNALVK 316

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+EL + EGI L FT+ ++  +A  A+   +     GAR L+ ++E+ + D+ F A   
Sbjct: 317 QYQELFRMEGIELRFTQAALKEVARRALKRGT-----GARGLRAILEKAMVDLMFEAPGS 371

Query: 408 QEKTVVIDAEYVRLHIGDFPS 428
             + +V D  ++   +     
Sbjct: 372 GVREIVFDLPHLDHPLKALEE 392



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P+EI + LD+Y++GQ+ AKRA+++A+ N ++R   P     E+   NILL+GPTG GKT 
Sbjct: 60  PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHPE---AEIGKANILLIGPTGTGKTL 116

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           ++  LAR    PF   + T  TE GYVG +VE ++  L+  A   V  +    V      
Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNADFDVERAEMGIVY----- 171

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD---ISNFDIPGGA 185
              + I          S TR+V  + ++   +   E  +                IP   
Sbjct: 172 --IDEIDKIARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIPVNT 229

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
              +  L   F  +    + +  + ++        R+E   +I  D + 
Sbjct: 230 KNILFILGGAFEGLENIVKARVGKTTIGFTGGRREREEPLEVIPEDLIK 278


>gi|301299297|ref|ZP_07205583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853141|gb|EFK80739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 408

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 59/303 (19%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ + 
Sbjct: 106 TELQKSNICLVGPTGSGKTFLAQNLARILNVPFAIADATTLTEAG-YVGEDVENILLKLL 164

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                 ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +    
Sbjct: 165 QNADYDVERAQ-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQ 223

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T +ILFI  GAF                                  
Sbjct: 224 GGRKHPQQEFIQIDTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQ 283

Query: 309 ---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P DL     +PE  GR P+   L+ L + D   ILT+ ++ LI QY++L+  + ++L
Sbjct: 284 QIIPEDLLKFGLIPEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVLL 343

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            F +D++  +A +A+  N+     GAR L++++E  + DI F        K VVI  + V
Sbjct: 344 KFEDDAVKEIAHLAIERNT-----GARGLRSIVEATMRDIMFDIPSEDNIKEVVITKDTV 398

Query: 420 RLH 422
              
Sbjct: 399 DGK 401



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EIV  L++Y++GQ++AK+ +A+A+ N ++R        D  EL   NI LVGPTG G
Sbjct: 63  TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R     D
Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +      D +N  
Sbjct: 183 EIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNIL 242

Query: 181 IPGGASVGILNLS 193
              G +   +   
Sbjct: 243 FIVGGAFDGIETM 255


>gi|118579612|ref|YP_900862.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter
           propionicus DSM 2379]
 gi|166214798|sp|A1AN84|CLPX_PELPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|118502322|gb|ABK98804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter
           propionicus DSM 2379]
          Length = 418

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 156/399 (39%), Gaps = 70/399 (17%)

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-EERILDALVGKTATSNTREVFR 152
           + G++ E++ + +   A+ I  E         A     EE +   L         ++V  
Sbjct: 15  FCGKSQEEVKKLIAGPAVYICDECIELCNDIIAEELKMEETLGPDLKKLPKPREIKDVLD 74

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGRKKK 207
           + +   E + K + + V +    I   + PG   +   N+     +     ++     + 
Sbjct: 75  EYVIGQEKAKKVLSVAVYNHYKRIETSNKPGDVEMQKSNILLLGPTGSGKTLLAQTLARI 134

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSG 261
           +++         + +      D++ +    +Q  +        GI+++DE DKI  +   
Sbjct: 135 LKVPFAMADATNLTEAGYVGEDVENIILSLLQAADYDVERAQKGIIYIDEIDKIARKSES 194

Query: 262 NG--IGVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---- 304
                 VS EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF    
Sbjct: 195 PSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFMKVDTTNILFICGGAFAGLD 254

Query: 305 ----------------HVSR--------------PADL-----LPEIQGRFPVRVHLKSL 329
                            V +              P DL     +PE  GR P+   L  L
Sbjct: 255 SVIQQRIGMKSLGFGADVKKRAEKKLGELLLNVTPDDLLKYGYIPEFIGRLPMLATLTEL 314

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           ++     IL + +++L+ QY++L + E + L FT+ S+ A+A  A+  N+     GAR L
Sbjct: 315 DEDAMVQILKEPKNSLVKQYQKLFELENVRLRFTDGSLVAIAREALKRNT-----GARGL 369

Query: 390 QTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
           ++++E  + DI +        K VVI  E +        
Sbjct: 370 RSILENSMLDIMYEVPSQPNVKEVVISEEVIYHKEKPIV 408



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 8/234 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD Y+IGQ+ AK+ +++A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 65  KPREIKDVLDEYVIGQEKAKKVLSVAVYNHYKRIETSNKPGDVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILSLLQAADYDVERAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    +   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFMKVDTTNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             G +   L+  + +              + + +K    L+    D L+    +
Sbjct: 245 ICGGAFAGLDSVIQQRIGMKSLGFGADVKKRAEKKLGELLLNVTPDDLLKYGYI 298


>gi|270156950|ref|ZP_06185607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|289164626|ref|YP_003454764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
 gi|269988975|gb|EEZ95229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae D-4968]
 gi|288857799|emb|CBJ11643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella
           longbeachae NSW150]
          Length = 424

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 74/306 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L++  ++++          ++ +              D++ + 
Sbjct: 109 GKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEA--------GYVGEDVENII 160

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +       +GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 161 QKLLQKCDYDVDKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASV 220

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------H 305
                      ++  ++T +ILFI  GAF                               
Sbjct: 221 PPQGGRKHPQQEFLQVDTSNILFICGGAFAGLEKVIRERSDKSGIGFSAQLKNKKDTNDE 280

Query: 306 VSR-----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
           +S+              L+PE  GR PV   L+ L++S    ILT+ ++ L  Q++ L K
Sbjct: 281 ISKVLNQLESDDLIKYGLIPEFVGRLPVVTTLQELDQSALIDILTNPKNALTKQFQSLFK 340

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            E + L+F ++++ A+A  A+        +GAR L+ ++E +L D  +    L+    VV
Sbjct: 341 MEDVELEFRDEALVAIAKKALERK-----MGARGLRAILENILLDTMYELPSLEGVIKVV 395

Query: 414 IDAEYV 419
           +D   +
Sbjct: 396 VDESVI 401



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 12/258 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+EI   LD Y+IGQ  AK+ +++A+ N ++R Q  ++   EL   NILL+GPTG GKT
Sbjct: 65  SPQEISGFLDEYVIGQAHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II+ L+      V +++      DE+
Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D SN    
Sbjct: 185 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQVDTSNILFI 244

Query: 183 GGAS----VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            G +      ++      S +  S + K  + +  +    L + ESD LI    +     
Sbjct: 245 CGGAFAGLEKVIRERSDKSGIGFSAQLKNKKDTNDEISKVLNQLESDDLIKYGLIPE--- 301

Query: 239 QMVENYGIVFLDEFDKIV 256
            +     +  L E D+  
Sbjct: 302 FVGRLPVVTTLQELDQSA 319


>gi|332882822|ref|ZP_08450433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679324|gb|EGJ52310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 412

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 153/377 (40%), Gaps = 69/377 (18%)

Query: 108 DVAINIVRESRRDEVREQASINAE---------ERILDALVGKTATSNTREVFRKKLRDG 158
              I I    R ++ +++ + N E         +R LD  V     +             
Sbjct: 39  QANIIIEEALRHEKNKDKKATNVEISLKTPQEIKRFLDQYVIGQDFTKKILSVAVYNHYK 98

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
            +    +D EV    S++      G    G   ++   +K++           + +    
Sbjct: 99  RLQQPNVDDEVEIQKSNVIMV---GETGTGKTLVARTIAKMLNVPIAIVDATVLTEAG-Y 154

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D    L  +       +   E  GIVF+DE DKI  +     I   VS EGVQ+ LL
Sbjct: 155 VGEDVESILSRLLQAADYDVAKAE-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALL 213

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF--------------------- 304
            L+EGS V+            KY  +NT+HILFIA GAF                     
Sbjct: 214 KLLEGSVVNVPPKGGRKHPDQKYIEVNTEHILFIAGGAFDGIERVISKRLNMQAVGYNSS 273

Query: 305 ---HVSR--------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
              H+ R        P DL     +PEI GR PV  ++  L++   R+ILT+ ++ +I Q
Sbjct: 274 KNTHIDRKNLVQYIIPKDLKDFGLIPEIIGRLPVLTYMNPLDRHTLRMILTEPKNAIIKQ 333

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y++L + +GI  + TE+++D + + A+        +GAR L+++ E +L D  F   +  
Sbjct: 334 YQKLFEMDGIRFEITEEALDFIVEKALEYK-----LGARGLRSLCENILTDAMFELPNSG 388

Query: 409 EKTVVIDAEYVRLHIGD 425
            K + +  EY    +  
Sbjct: 389 VKNLTVTKEYAEEKLNK 405



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P  D   E+   N+++VG TG GK
Sbjct: 67  TPQEIKRFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNVDDEVEIQKSNVIMVGETGTGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V
Sbjct: 127 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAADYDVAKAERGIV 182


>gi|237708013|ref|ZP_04538494.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|265754200|ref|ZP_06089389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
 gi|229457999|gb|EEO63720.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           9_1_42FAA]
 gi|263234909|gb|EEZ20464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_33FAA]
          Length = 416

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+  +  D EI+          SN  + G    G   L+   +K++        
Sbjct: 96  NHYKRLLQKVDKDDIEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 146

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 147 ATVLTEAG-YVGEDIESLLTRLLQVADYNVAEAE-RGIVFIDEIDKIARKGDNPSITRDV 204

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 205 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERKIAQRL 264

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR P+  +L  L+++  R I
Sbjct: 265 NTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNI 324

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D A+        +GAR L++++E ++
Sbjct: 325 LTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDKAIEYK-----LGARGLRSIVETIM 379

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F     + K   +  ++ +  +G 
Sbjct: 380 MDVMFEIPSQKAKKYEVTLDFAKQQMGK 407



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L     P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++V
Sbjct: 61  LNLKELPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMV 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 121 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 241 NTKNILFICGGAFDGIE 257


>gi|150003036|ref|YP_001297780.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides
           vulgatus ATCC 8482]
 gi|254883674|ref|ZP_05256384.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294775660|ref|ZP_06741168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|319642189|ref|ZP_07996849.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
 gi|149931460|gb|ABR38158.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|254836467|gb|EET16776.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp.
           4_3_47FAA]
 gi|294450504|gb|EFG18996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           vulgatus PC510]
 gi|317386175|gb|EFV67094.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp.
           3_1_40A]
          Length = 416

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+  +  D EI+          SN  + G    G   L+   +K++        
Sbjct: 96  NHYKRLLQKVDKDDIEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 146

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 147 ATVLTEAG-YVGEDIESLLTRLLQVADYNVAEAE-RGIVFIDEIDKIARKGDNPSITRDV 204

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 205 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERKIAQRL 264

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR P+  +L  L+++  R I
Sbjct: 265 NTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNI 324

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D A+        +GAR L++++E ++
Sbjct: 325 LTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDKAIEYK-----LGARGLRSIVETIM 379

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F     + K   +  ++ +  +G 
Sbjct: 380 MDVMFEIPSQKAKKYEVTLDFAKQQMGK 407



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L     P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++V
Sbjct: 61  LNLKELPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMV 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 121 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 241 NTKNILFICGGAFDGIE 257


>gi|301312049|ref|ZP_07217971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 20_3]
 gi|300830151|gb|EFK60799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 20_3]
          Length = 410

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 90  NHYKRLLQKVTADDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 140

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 141 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 196

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 197 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 256

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++   R
Sbjct: 257 RLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRDTLR 316

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L + +GI L F E   + + D A+        +GAR L++++E 
Sbjct: 317 NILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDKALEFK-----LGARGLRSIVEA 371

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S    + K + +  EY +     
Sbjct: 372 VMMDAMYSMPSQKVKELHVTLEYAKEKFEK 401



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K      P +I + LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++V
Sbjct: 55  LKQKDLPKPEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTADDVEIEKSNIIMV 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 115 GATGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          E    + 
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 235 DTKNILFVCGGAFDGIE 251


>gi|50292183|ref|XP_448524.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527836|emb|CAG61485.1| unnamed protein product [Candida glabrata]
          Length = 549

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 163/388 (42%), Gaps = 71/388 (18%)

Query: 44  PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103
             D   EL   N+L++GP+G GKT +++ LAR+   P    + T+ T+ GY+G +VE  I
Sbjct: 160 QEDQDLELSKSNVLVIGPSGSGKTLLAQTLARVLDVPIAISDCTQLTQAGYIGEDVEVCI 219

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             L+  A   V ++ +  +           +LD                           
Sbjct: 220 ERLLVNANYDVAKAEKGII-----------VLD--------------------------- 241

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           EID ++A +SS     D+ G           +   ++       + ++V+K         
Sbjct: 242 EID-KLAKSSSSFGTKDVSGEG---------VQQSLLKIIEGHNVEITVKKPVKV----G 287

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDE-----FDKIVARDSGNGIGVSREGVQRDLLPL 278
           +D+  +  T  +D   ++    I+F+        DKIVA+               +   +
Sbjct: 288 TDKNNNQTTAKKDETFVINTSNILFMIMGAFVNLDKIVAKRIRKLQNKEE--KDGEEEDM 345

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSD 333
            + S+ S    +IN ++     + A +++ P DL     +PE+ GR P+   L+ L  +D
Sbjct: 346 SKSSAYSNSIETINLENG--KQTSALNLATPTDLVSYGMIPELVGRVPIITALEPLQSND 403

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              IL + ++ L  QY  + K  G+ L  T+ ++  +AD A+         GAR L+ +M
Sbjct: 404 LFHILKEPKNALFDQYTYIFKQFGVRLCMTDKALKKVADFALK-----ERTGARGLRGIM 458

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRL 421
           ER+L ++++   D     V+++ + V  
Sbjct: 459 ERLLLNVNYECPDSGISYVLVNEKTVDS 486


>gi|291515534|emb|CBK64744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Alistipes
           shahii WAL 8301]
          Length = 422

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 135/339 (39%), Gaps = 62/339 (18%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            +    A            +    + KE ++E+     D SN  + G    G   ++   
Sbjct: 86  VIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEI-----DKSNIVLVGPTGTGKTLMARTI 140

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           +K++           + +    +  D    L  +  V   +++  E  GIVF+DE DKI 
Sbjct: 141 AKLLKVPFTIVDATVLTEAG-YVGEDVESILSRLLQVADYNVEQAE-RGIVFIDEIDKIA 198

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
            +     I   VS EGVQ+ LL ++EG+ V+            K+  ++T +ILFI  GA
Sbjct: 199 RKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQVDTRNILFICGGA 258

Query: 304 -------------------------------------FHVSRPADLLPEIQGRFPVRVHL 326
                                                    +   L+PE+ GR PV  ++
Sbjct: 259 FDGIEKKIAQRLNTRAMGYGRLNADPIDRSNLMQYVTPQDLKSFGLIPELVGRLPVLTYM 318

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           + L ++  R ILT+ ++ ++ QYK L + +G+ L F +D++D + D AV        +GA
Sbjct: 319 QPLERAALRSILTEPKNAIVKQYKRLFELDGVKLAFDDDALDYIVDKAVEFK-----LGA 373

Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           R L+++ E ++ D  F       +   +   Y +  I  
Sbjct: 374 RGLRSICEAIMMDTMFDIPSTDARKFTVTLPYAKKKIEK 412



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLV 59
           +K+     P +I   LD+Y+IGQ  AKR +++A+ N ++R    P +   E+   NI+LV
Sbjct: 67  LKMEELLKPAQIKEFLDQYVIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ R
Sbjct: 127 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 186

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          E      
Sbjct: 187 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 246

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 247 DTRNILFICGGAFDGIE 263


>gi|228472218|ref|ZP_04056984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276421|gb|EEK15145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 415

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 133/316 (42%), Gaps = 64/316 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            E  + E++I+        SN  + G    G   ++   ++++             +   
Sbjct: 102 QERDEHEVEIQK-------SNIVMVGQTGTGKTLMARTIAQMLNVPLAIVDATVFTEAG- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +       +   E  GIVF+DE DKI  +     I   VS EGVQ  L
Sbjct: 154 YVGEDVESILTRLLQAADYDVDRAE-RGIVFIDEIDKIARKGDNPSITRDVSGEGVQHAL 212

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------- 305
           L L+EGS V+            KY  +NT+HILFIA GAF                    
Sbjct: 213 LKLLEGSIVNVPPKGGRKHPDQKYIEVNTEHILFIAGGAFDGIEQIIAKRMNRQAVGYNT 272

Query: 306 ------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                               +   L+PEI GR PV  ++  L++S  R+ILT+ ++ +I 
Sbjct: 273 SKETRVDDKNLLQYVTHKDLKDFGLIPEIIGRLPVLTYMNPLDESTLRMILTEPKNAIIK 332

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY +L   + I L F E++++ + + A+        +GAR L+++ E +L D  F     
Sbjct: 333 QYIKLFGMDDIALSFEEEALNFIVEKALEYK-----LGARGLRSLCESILTDAMFQLPGT 387

Query: 408 QEKTVVIDAEYVRLHI 423
           +EK++V+   Y +  +
Sbjct: 388 EEKSLVVTRAYAQEKL 403



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 4/126 (3%)

Query: 1   MKLTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNI 56
           M +  +     P EI S LD+Y+IGQ+  K+ +++A+ N ++R     D  + E+   NI
Sbjct: 57  MAMNKDLLLKKPTEIKSFLDQYVIGQEATKKVLSVAVYNHYKRLLQERDEHEVEIQKSNI 116

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           ++VG TG GKT ++R +A++   P   V+ T FTE GYVG +VE I+  L+  A   V  
Sbjct: 117 VMVGQTGTGKTLMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILTRLLQAADYDVDR 176

Query: 117 SRRDEV 122
           + R  V
Sbjct: 177 AERGIV 182


>gi|158321198|ref|YP_001513705.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus oremlandii
           OhILAs]
 gi|229889849|sp|A8MIS7|CLPX_ALKOO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|158141397|gb|ABW19709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus
           oremlandii OhILAs]
          Length = 426

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 61/329 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +        D++  D     SN  + G    G   L++  +K++          S+ +  
Sbjct: 90  NHYKRINVEDVKSGDVELQKSNILMLGPTGSGKTLLAQTLAKIINVPFAIADATSLTEAG 149

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 150 -YVGEDVENILLKLIQAADYDIERAEK-GIIYIDEVDKIARKSENPSITRDVSGEGVQQA 207

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------ 305
           LL ++EG+  S            ++  I+T +ILFI  GAF                   
Sbjct: 208 LLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIVGGAFDGIDSIIQKRTSKKSMGFG 267

Query: 306 ----------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                             +P DLL     PE  GR PV V L+ L++     ILT+ ++ 
Sbjct: 268 AEIESKQVLDLGSLLKQIQPEDLLKFGLIPEFVGRLPVVVTLEQLDEEALIKILTEPKNA 327

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QYK L + +G+ L+  E+++  +A  A+   +     GAR L+ ++E ++ D  +  
Sbjct: 328 LTKQYKRLFEIDGVHLEIEEEALRLIAKKAIERKT-----GARGLRGIVEGIMMDTMYEI 382

Query: 405 SDLQE-KTVVIDAEYVRLHIG-DFPSETD 431
               + + V+I AE +  +       + D
Sbjct: 383 PSRDDIEKVIITAEAITENKEPKILLKED 411



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
            P EI   LD+Y+IGQ+ AK+A+A+A+ N ++R  +        EL   NIL++GPTG G
Sbjct: 62  KPSEIKDILDQYVIGQEKAKKALAVAVYNHYKRINVEDVKSGDVELQKSNILMLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + +     D
Sbjct: 122 KTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAEKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +                   D +N  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNIL 241

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   ++  + +  SK       +     V      L + + + L+
Sbjct: 242 FIVGGAFDGIDSIIQKRTSKKSMGFGAEIESKQVLDLGSLLKQIQPEDLL 291


>gi|262383889|ref|ZP_06077025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_33B]
 gi|262294787|gb|EEY82719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 2_1_33B]
          Length = 410

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 90  NHYKRLLQKVTADDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 140

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 141 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 196

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 197 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 256

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++   R
Sbjct: 257 RLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRDTLR 316

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L + +GI L F E   + + D A+        +GAR L++++E 
Sbjct: 317 NILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDKALEFK-----LGARGLRSIVEA 371

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S    + K + +  EY +     
Sbjct: 372 VMMDAMYSMPSQKVKELHVTLEYAKEKFEK 401



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K      P +I + LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++V
Sbjct: 55  LKQKDLPKPEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTADDVEIEKSNIIMV 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 115 GATGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          E    + 
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 235 DTKNILFVCGGAFDGIE 251


>gi|256841000|ref|ZP_05546507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parabacteroides sp. D13]
 gi|256736843|gb|EEU50170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parabacteroides sp. D13]
          Length = 410

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 90  NHYKRLLQKVTADDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 140

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 141 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 196

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 197 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 256

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++   R
Sbjct: 257 RLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRDTLR 316

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L + +GI L F E   + + D A+        +GAR L++++E 
Sbjct: 317 NILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDKALEFK-----LGARGLRSIVEA 371

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S    + K + +  EY +     
Sbjct: 372 VMMDAMYSMPSQKVKELHVTLEYAKEKFEK 401



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K      P +I + LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++V
Sbjct: 55  LKQKDLPKPEDIKTFLDQYVIGQNDAKRYLSVSVYNHYKRLLQKVTADDVEIEKSNIIMV 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 115 GATGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          E    + 
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 235 DTKNILFVCGGAFDGIE 251


>gi|326693800|ref|ZP_08230805.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc
           argentinum KCTC 3773]
          Length = 415

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 137/318 (43%), Gaps = 66/318 (20%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  E      D+E+  +     N  + G    G   L++  ++++          ++ + 
Sbjct: 96  RINEHFAPTTDVELQKS-----NIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEA 150

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + ++ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 151 G-YVGEDVENIILKLLQAANFDIEAAQ-RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQ 208

Query: 274 DLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF------------------ 304
            LL ++EG+  SV  + G          ++T +ILFI  GAF                  
Sbjct: 209 ALLKMLEGTIASVPPQGGRKHPQQELIQVDTTNILFIVGGAFAGIDTIIKERLGERVIGF 268

Query: 305 -----------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                               +P DL+     PE  GR P+   L  L  SD   ILT+ +
Sbjct: 269 GSHANENAAALDDDNILKYVQPEDLIKFGLIPEFIGRLPIVTVLDELTVSDLVRILTEPK 328

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + LI QY+ L+  + + L+F  D+++A+A++A+  ++     GAR L++++E V++D+ F
Sbjct: 329 NALIKQYQALLGLDDVALEFQPDALEAMAELAIKRHT-----GARGLRSIIEHVMKDVMF 383

Query: 403 SASDLQEK-TVVIDAEYV 419
                 +   VVI    V
Sbjct: 384 DIPSRDDVAKVVITKASV 401



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 13/255 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
           +P EIV++L+ Y+IGQ+DAK+ +A+A+ N ++R           EL   NI L+GPTG G
Sbjct: 64  TPHEIVAQLNDYVIGQEDAKKTLAVAVYNHYKRINEHFAPTTDVELQKSNIALIGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   +  ++R     D
Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAANFDIEAAQRGIIYVD 183

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    +            +      D +N  
Sbjct: 184 EIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELIQVDTTNIL 243

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
              G +   +   +   K     R         +    L  D   + +  + + +  +  
Sbjct: 244 FIVGGAFAGI---DTIIKERLGERVIGFGSHANENAAALDDDNILKYVQPEDLIKFGLIP 300

Query: 241 VENYG---IVFLDEF 252
                   +  LDE 
Sbjct: 301 EFIGRLPIVTVLDEL 315


>gi|120404990|ref|YP_954819.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           vanbaalenii PYR-1]
 gi|166214792|sp|A1TCB3|CLPX_MYCVP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119957808|gb|ABM14813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           vanbaalenii PYR-1]
          Length = 426

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLERIVSDRVGKRGLGFGAEVKSKAEIDTQDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL+  ++ L+ QY  L + +G+ L+F E
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVQILSQPKNALVKQYTRLFEMDGVELEFAE 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E V  ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVLDNV 407



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRSEPVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|213962533|ref|ZP_03390795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sputigena Capno]
 gi|213954859|gb|EEB66179.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Capnocytophaga sputigena Capno]
          Length = 410

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 135/319 (42%), Gaps = 64/319 (20%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
               +D E++I+        SN  + G    G   ++   +K++           + +  
Sbjct: 99  QQPNADDEVEIQK-------SNVIMVGETGTGKTLVARTIAKMLNVPIAIVDATVLTEAG 151

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D    L  +       ++  E  GIVF+DE DKI  +     I   VS EGVQ+ 
Sbjct: 152 -YVGEDVESILTRLLQAADYDVEKAE-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQA 209

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------ 305
           LL L+EGS V+            KY  +NT+HILFIA GAF                   
Sbjct: 210 LLKLLEGSVVNVPPKGGRKHPDQKYIEVNTEHILFIAGGAFDGIERVISKRLNMQSVGYN 269

Query: 306 -------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR PV  ++  L+K   R+ILT+ ++ +I
Sbjct: 270 SSKNTQVDRKNLVQYIIPKDLKDFGLIPEIIGRLPVLTYMNPLDKHTLRMILTEPKNAII 329

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L + +GI  D TE+++D + + A+        +GAR L+++ E +L D  F   +
Sbjct: 330 KQYKKLFEMDGINFDITEEALDFIVEKALEYK-----LGARGLRSLCENILTDAMFELPN 384

Query: 407 LQEKTVVIDAEYVRLHIGD 425
              K + +  EY    +  
Sbjct: 385 SGVKELKVTKEYAEEKLNK 403



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y+IGQ   K+ +++A+ N ++R Q P AD   E+   N+++VG TG GK
Sbjct: 65  TPQEIKQFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNADDEVEIQKSNVIMVGETGTGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V
Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILTRLLQAADYDVEKAERGIV 180


>gi|163791244|ref|ZP_02185660.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
 gi|159873514|gb|EDP67602.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7]
          Length = 415

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 58/294 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 112 SNICLIGPTGSGKTFLAQSLARILNVPFAIADATSLTEAG-YVGEDVENILLKLMQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DVERAQK-GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFHVSR--------------------------------PAD 311
              ++  ++T +ILFI  GAF                                    P D
Sbjct: 230 PHQEFIQLDTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKIEEGQSVMQQIIPED 289

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE  GR PV   L+ L + D   ILT  ++ L  QYK+L+  + + L+F EDS
Sbjct: 290 LLKFGLIPEFIGRLPVMAALEKLTEDDLVHILTKPKNALAKQYKKLLGLDDVELEFEEDS 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419
           +  +A  A+  N+     GAR L++++E ++ +I F      +    VI  + V
Sbjct: 350 LTEIAKKAIERNT-----GARGLRSIIESIMLEIMFDLPSRPEIVKCVITKDTV 398



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P+EI   L+ Y+IGQ+ AK+++++A+ N ++R            EL   NI L+GPTG 
Sbjct: 63  KPQEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQIGGDEKDGVELQKSNICLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++     
Sbjct: 123 GKTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAADYDVERAQKGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +                 D SN 
Sbjct: 183 DEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQLDTSNI 242

Query: 180 DIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               G +   +     + +  KV+G G  KK     Q    +++ ++  + 
Sbjct: 243 LFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKIEEGQSVMQQIIPEDLLKF 293


>gi|332672822|gb|AEE69639.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           83]
          Length = 448

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVCITKDCVLKQAEPLI 438



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|228470546|ref|ZP_04055403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
 gi|228307673|gb|EEK16649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas
           uenonis 60-3]
          Length = 439

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 70/304 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++       +  ++      ++        D++++   
Sbjct: 139 SNILMVGPTGCGKTLLAQSIARMLQ------VPFAMVDA--TVLTQAGYVGEDIESIISR 190

Query: 237 SIQ------MVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q           GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS ++   
Sbjct: 191 LLQNCDYDVAAAERGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPP 250

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    K+  +NT  ILFI +GAF                                 
Sbjct: 251 YGGRKHPEQKFIQVNTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLL 310

Query: 305 -HVS----RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
            H++    R   L+PEI GR P+  +L +L+      IL + ++ +  QY++L + +G+ 
Sbjct: 311 AHITHQDLRRYGLIPEIIGRLPILTYLDALDSESLLRILVEPKNAITKQYQKLFEMDGVR 370

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F ED++  +  +AV        +GAR L++++E+++ D  +    L+ KT+ I  +Y 
Sbjct: 371 LTFDEDALKYIVSIAVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYA 425

Query: 420 RLHI 423
           R  +
Sbjct: 426 RSKV 429



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 11/126 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------DELMPKNI 56
            P+EI + LDRY+IGQ DAK+ +++A+ N ++R     +              E+   NI
Sbjct: 82  KPQEIDAYLDRYVIGQSDAKKYLSVAVYNHYKRILASQEKDGKSDESSKLDDVEIAKSNI 141

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L+VGPTG GKT +++ +AR+   PF  V+ T  T+ GYVG ++E II  L+      V  
Sbjct: 142 LMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLLQNCDYDVAA 201

Query: 117 SRRDEV 122
           + R  V
Sbjct: 202 AERGIV 207


>gi|207091895|ref|ZP_03239682.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 446

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 59/345 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 109 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 168

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 169 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 226

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 227 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 286

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 287 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 346

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 347 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 401

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E    DI F    L+   V I  + V                IL
Sbjct: 402 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 445



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 82  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 141

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 142 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 201

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 202 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 261

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 262 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 317


>gi|218135128|ref|ZP_03463932.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990513|gb|EEC56524.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC
           43243]
          Length = 465

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 129/321 (40%), Gaps = 67/321 (20%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +D   DIE+  +     N  + G    G   L +  +K++          S+ +      
Sbjct: 155 TDTMDDIEIEKS-----NMLMIGPTGSGKTYLVKTLAKLLNVPLAIADATSLTEAGYIGD 209

Query: 221 RDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
             ES   +L+       + +   E  GI+F+DE DKI  +       VS E VQ+ +L L
Sbjct: 210 DIESVVSKLL---AAADNDVDRAEQ-GIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKL 265

Query: 279 VEGSSVSTKYG-----------SINTDHILFIASGAF----------------------- 304
           +EGS +    G           ++NT +ILFI  GAF                       
Sbjct: 266 LEGSDIEVPVGATSKNAMVPLTTVNTRNILFICGGAFPELDEVIKERLNEQASIGFIADL 325

Query: 305 ----------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                              R   ++PE  GR PV   L  L+K     IL + ++ ++ Q
Sbjct: 326 KDKYDNDDKLLSKVTLEDLRNFGMIPEFLGRLPVVFTLDPLDKDMLVSILKEPKNAILKQ 385

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DL 407
           YK+L+  + + L+F + +++A+A+ A+   +     GAR L++++E  + DI +    D 
Sbjct: 386 YKKLLALDEVELEFDDSALEAIAEKALEKKT-----GARALRSIIEEFMLDIMYEIPKDD 440

Query: 408 QEKTVVIDAEYVRLHIGDFPS 428
               V+I  +Y+    G    
Sbjct: 441 NIGRVIITGDYINKKGGPVIQ 461



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 4/177 (2%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           ++L    +P EI ++LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++G
Sbjct: 113 IELKDIPAPHEIKAKLDEYVIGQDYAKKVMSVAVYNHYKRVATDTMDDIEIEKSNMLMIG 172

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTG GKT + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +   
Sbjct: 173 PTGSGKTYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVDRAE-- 230

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             +    I+  ++I      ++   +   V +  L+  E SD E+ +     ++ + 
Sbjct: 231 --QGIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSDIEVPVGATSKNAMVP 285


>gi|150008999|ref|YP_001303742.1| ATP-dependent protease ATP-binding subunit ClpX [Parabacteroides
           distasonis ATCC 8503]
 gi|149937423|gb|ABR44120.1| ATP-dependent Clp protease ATP-binding subunit [Parabacteroides
           distasonis ATCC 8503]
          Length = 410

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 90  NHYKRLLQKVTADDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 140

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 141 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 196

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 197 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 256

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++   R
Sbjct: 257 RLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRDTLR 316

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L + +GI L F E   + + D A+        +GAR L++++E 
Sbjct: 317 NILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDKALEFK-----LGARGLRSIVEA 371

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S    + K + +  EY +     
Sbjct: 372 VMMDAMYSMPSQKVKELHVTLEYAKEKFEK 401



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K      P +I + LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++V
Sbjct: 55  LKQKDLPKPEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTADDVEIEKSNIIMV 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 115 GATGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          E    + 
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 235 DTKNILFVCGGAFDGIE 251


>gi|319953652|ref|YP_004164919.1| sigma 54 interacting domain protein [Cellulophaga algicola DSM
           14237]
 gi|319422312|gb|ADV49421.1| Sigma 54 interacting domain protein [Cellulophaga algicola DSM
           14237]
          Length = 411

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 76/391 (19%)

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA-------LVGKTATSNTR 148
           G +     R +      +  ES++ +  + +S    ++ L+        ++G+  T    
Sbjct: 24  GLDAHICDRCIEQAHGIVAEESKQTKNEDLSSELVLKKPLEIKDFLDTYIIGQERTKKVM 83

Query: 149 EV----FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
            V      K+L      + E++I+        SN  + G    G   +++  +K++    
Sbjct: 84  SVAVYNHYKRLLQPSSLEDEVEIQK-------SNIIMVGQTGTGKTLMAKTIAKMLNVPL 136

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                  + +    +  D    L  +      +++  E  GIVF+DE DKI  +     I
Sbjct: 137 AIVDATVLTEAG-YVGEDVESILTRLLQAADYNLEKAE-RGIVFIDEIDKIARKSDNPSI 194

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------- 303
              VS EGVQ+ LL L+EG+ V+            K+  +NT++ILFIA GA        
Sbjct: 195 TRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILFIAGGAFDGIERAI 254

Query: 304 ----------FHVSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSD 333
                     +  S+  D                    L+PEI GR PV  H+  L+   
Sbjct: 255 NKRLNMQSIGYSASKNEDRPDENNILQYIIPRDLKEFGLIPEIIGRLPVLTHMNPLDTEA 314

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
            R ILT+ ++ +I QY++L K + + L  T+++++ + + A+        +GAR L+++ 
Sbjct: 315 LRAILTEPKNAIIKQYEKLFKMDDVTLTVTDEALNYIVEKAIEYK-----LGARGLRSLC 369

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           E +  D  F      EK + +   Y    + 
Sbjct: 370 EAIFTDAMFELPSSDEKQLKVSRAYAEKKLS 400



 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P EI   LD YIIGQ+  K+ +++A+ N ++R   P+ L DE  +   NI++VG TG G
Sbjct: 61  KPLEIKDFLDTYIIGQERTKKVMSVAVYNHYKRLLQPSSLEDEVEIQKSNIIMVGQTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   + ++ R     D
Sbjct: 121 KTLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAERGIVFID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +      +  N  
Sbjct: 181 EIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENIL 240

Query: 181 IPGGASVGILN 191
              G +   + 
Sbjct: 241 FIAGGAFDGIE 251


>gi|15645984|ref|NP_208165.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori 26695]
 gi|6225167|sp|O25926|CLPX_HELPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2314544|gb|AAD08417.1| ATP-dependent protease ATPase subunit (clpX) [Helicobacter pylori
           26695]
          Length = 446

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 59/345 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 109 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 168

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 169 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 226

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 227 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 286

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 287 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 346

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 347 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-----GARGLRAI 401

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E    DI F    L+   V I  + V                IL
Sbjct: 402 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 445



 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 25/243 (10%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50
           L++  +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +            
Sbjct: 76  LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 135

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L
Sbjct: 136 EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 195

Query: 107 VDVAINIVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEIS 161
           +  +   V+++++  V     ++ S  +E R I   + G+       ++    L +    
Sbjct: 196 LQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 255

Query: 162 DKEIDIE---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
                 E   +   +SDI          +  +        V+G  ++K  +   Q+    
Sbjct: 256 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILH 314

Query: 219 LMR 221
           L++
Sbjct: 315 LVQ 317


>gi|1770075|emb|CAA99537.1| ATP dependent Clp protease [Bacillus subtilis]
          Length = 420

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 127/306 (41%), Gaps = 63/306 (20%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          S+ +        E+  L
Sbjct: 101 KVDDVELSQSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL 160

Query: 228 IDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
                + + +   VE    GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 161 ----ELIQAADYDVEKTGKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------------------------- 304
            S            ++  I+T +ILFI  G F                            
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGRFDGIEQIIKRRLAQKVIGFGADNKAADLE 276

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL     +PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++
Sbjct: 277 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            + + L+F E+++  +A  A+   +     GAR L++++E ++ D+ F      + +  V
Sbjct: 337 LDNVELEFEEEALSEIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCV 391

Query: 414 IDAEYV 419
           I    V
Sbjct: 392 ITGATV 397



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R    + + D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----RRDE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A   V ++       DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAADYDVEKTGKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G     + 
Sbjct: 243 ICGGRFDGIE 252


>gi|223038749|ref|ZP_03609042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           rectus RM3267]
 gi|222880151|gb|EEF15239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           rectus RM3267]
          Length = 393

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 124/308 (40%), Gaps = 58/308 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K +          S+ +    +  D  + L  +      
Sbjct: 92  SNILLVGPTGSGKTLMAQTLAKFLDVPIAICDATSLTEAG-YVGEDVENILTRLLQAADG 150

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 151 DVKRAEQ-GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKH 209

Query: 287 ---KYGSINTDHILFIASGAF-------------------HVSRPAD------------- 311
              ++  I+T +ILF+  GAF                      R  D             
Sbjct: 210 PNQEFIQIDTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDRENLLDALESDD 269

Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE+ GR  V   L  + + D   ILT+ ++ ++ QY++L   +   L F +++
Sbjct: 270 LVHFGLIPELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLFAIDRANLKFDDEA 329

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +  +A +A+   +     GAR L+++ME ++ D+ +   +L    VVI  E V       
Sbjct: 330 LKEVARLAIERKT-----GARGLRSIMEEIMTDVMYELPELAGYDVVITKEVVSGKEKPI 384

Query: 427 -PSETDMY 433
                 + 
Sbjct: 385 FVKNNKIS 392



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 10/227 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           N +P+E+ + LD Y+IGQ  AK+  ++ + N ++R     +  D  E+   NILLVGPTG
Sbjct: 42  NLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGETPDDTEISKSNILLVGPTG 101

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+ + +    
Sbjct: 102 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVKRAEQGIVF 161

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    L +                 D SN
Sbjct: 162 VDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSN 221

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
              + GGA  G+ ++ E  +   V+G G+ K+ +   +     L  D
Sbjct: 222 ILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDRENLLDALESD 268


>gi|156050417|ref|XP_001591170.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980]
 gi|154692196|gb|EDN91934.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 624

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 162/402 (40%), Gaps = 76/402 (18%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           R  + P+  R  +   N++L+GP+GVGKT I + LAR+   PF  V+ +  T+ GY+G +
Sbjct: 171 RPLEDPSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTD 230

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK----- 153
           +E  I  L+  + + V++           I  +E  +D L      ++ R+V  +     
Sbjct: 231 IESSIERLLLASSHSVQKCET------GIIFFDE--IDKLAKPAVMTHGRDVSGEGVQQG 282

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            L+  E ++  I+ +    +S+ S     GG      + SE                   
Sbjct: 283 LLKMIEGTNVTINAKSDKNASNSSRGIDRGGRETSPPSKSE------------------- 323

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273
                             T+   +I  V     + L+   KI+++    G  +       
Sbjct: 324 ----------------QYTIDTSNILFVFAGAFIGLE---KIISQRLSTGSSIGFNSSLS 364

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
                +  +    K   ++T        G         L+PE+ GR P+   L  L+   
Sbjct: 365 SFFSAIP-TKEPEKDILVHTTPTDLQNYG---------LIPELLGRIPITTSLSPLSLPQ 414

Query: 334 FRLILTDTESNLILQYKELMKTE---GIILDFTEDSIDALADVAV-----------NLNS 379
              ILT+  ++L+ QY  L +T    GIIL FT+ +++A+A  A+               
Sbjct: 415 LVSILTEPRNSLVKQYTALFETYGPHGIILRFTKLALEAIASRALYGSSSGDTQESKGKG 474

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
               IGAR L++VME VL++I F        + V++D  +++
Sbjct: 475 EKAGIGARGLRSVMESVLQEIMFIGPSSPNIRYVLVDEAFIK 516


>gi|308183486|ref|YP_003927613.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
 gi|308065671|gb|ADO07563.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori PeCan4]
          Length = 452

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 133/342 (38%), Gaps = 58/342 (16%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 115 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 174

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 175 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 232

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 233 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 292

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 293 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 352

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 353 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 407

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434
           +E    DI F    L+   V I  + V               
Sbjct: 408 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSR 449



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 88  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 147

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 207

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 208 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 267

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 268 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 323


>gi|208435267|ref|YP_002266933.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
 gi|208433196|gb|ACI28067.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27]
          Length = 448

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|164686708|ref|ZP_02210736.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
 gi|164604098|gb|EDQ97563.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM
           16795]
          Length = 415

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 67/323 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   + + K++DI+        SN  + G    G   L++  +K +          
Sbjct: 91  HYKRIYSKKGNSKDVDIQK-------SNILLLGPTGSGKTLLAQTLAKTLNVPFAMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       I+  E  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLKLIQAADFDIEKAE-RGIIYIDEIDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL ++EG+  +            ++  I+T ++LFI  GA              
Sbjct: 202 EGVQQALLKILEGTVANVPPQGGRKHPHQEFLKIDTTNVLFILGGAFDGIEKIIQRRGET 261

Query: 304 --------------------FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                               +    P DL     +PE  GR PV   L+ L+++    IL
Sbjct: 262 KTLGFGAKIESKKNVDLGKIYSKVLPEDLLKFGIIPEFIGRIPVVATLELLDENALMRIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L+ QYK+L++ + + L+F ++++ A+A  A+  N+     GAR L++++E V+ 
Sbjct: 322 QEPKNALVKQYKKLLELDNVELEFEDEALRAIAKKAIERNT-----GARGLRSIVESVMM 376

Query: 399 DISFSASDLQE-KTVVIDAEYVR 420
           +  +      + K V++  + V 
Sbjct: 377 ESMYEVPSRDDIKKVIVTKKAVE 399



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 10/233 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P+E++  L+ Y+IGQ+ AK+ +++A+ N ++R   +       ++   NILL+GPTG G
Sbjct: 62  KPKEMMEILNDYVIGQERAKKILSVAVYNHYKRIYSKKGNSKDVDIQKSNILLLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ R  +   
Sbjct: 122 KTLLAQTLAKTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDIEKAERGIIY-- 179

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  +                  
Sbjct: 180 -----IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV-ANVPPQGGRKHPHQEFL 233

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            +   N+  +         K   R    K      + ES + +D+  ++   +
Sbjct: 234 KIDTTNVLFILGGAFDGIEKIIQRRGETKTLGFGAKIESKKNVDLGKIYSKVL 286


>gi|114327970|ref|YP_745127.1| ATP-dependent protease ATP-binding subunit ClpX [Granulibacter
           bethesdensis CGDNIH1]
 gi|122327068|sp|Q0BSJ8|CLPX_GRABC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|114316144|gb|ABI62204.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX
           [Granulibacter bethesdensis CGDNIH1]
          Length = 420

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 136/329 (41%), Gaps = 65/329 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  DIE+       SN  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLAHGQKNNDIEI-----GKSNIMLIGPTGSGKTLLAQTLARILDVPFTMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIGSRGKGGG 265

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV   L+ L+++    ILT 
Sbjct: 266 IGYGAEVRDPDERRTGEILREVEPEDLLRFGLIPEFIGRLPVVATLEDLDEAALIEILTK 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY  L + EG+ L FT+D++ ++A+ A+   +     GAR L++++E +L   
Sbjct: 326 PKNALVKQYGRLFEMEGVSLSFTDDALKSVANRAIARKT-----GARGLRSILEGILLGT 380

Query: 401 SFSASDLQE-KTVVIDAEYVRLHIGDFPS 428
            +    ++  + VVI+ E          +
Sbjct: 381 MYDLPGMENVEEVVINGEVAEGRAAPLMT 409



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ  AK+ +++A+ N ++R        D E+   NI+L+GPTG GK
Sbjct: 65  TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLAHGQKNNDIEIGKSNIMLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V  ++R     DE
Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + +  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF 244

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY--PELMRDESDRLI 228
             G +   L          G            +      L   E + L+
Sbjct: 245 ICGGAFAGLEKIIGSRGKGGGIGYGAEVRDPDERRTGEILREVEPEDLL 293


>gi|47220509|emb|CAG05535.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 669

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 130/388 (33%), Gaps = 83/388 (21%)

Query: 53  PKNILLVGPTG----VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           P  + L  P       GKT +++ LAR    PF   + T  T+ GYVG ++         
Sbjct: 283 PGGLSLTTPPHPLTVAGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDI--------- 333

Query: 109 VAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
                                  E ++  L+     S       +K + G +   E+D  
Sbjct: 334 -----------------------ESVIAKLLQDANYSV------EKAQQGIVFLDEVDKI 364

Query: 169 VADTSSDISNFDIPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +             G   G+L L E     V     +K    +VQ              
Sbjct: 365 GSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPEKNSRKLRGETVQ-------------- 410

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-------------GNGIGVSREGVQRD 274
                V   +I  V +     LD    I  R +             G    + +      
Sbjct: 411 -----VDTTNILFVASGAFNGLDRI--ISRRKNEKVSWLHCQYLGFGTPSNLGKGRRAAA 463

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334
              L   S  +     I     L     A  +     ++PE  GR PV V L SL++   
Sbjct: 464 AADLANSSGETDTVAEIEEKDRLLKHVEARDLIE-FGMIPEFVGRLPVVVPLHSLDEDTL 522

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  + ++ QY+ L   +   L+  E ++ A+A +A+   +     GAR L+++ME
Sbjct: 523 VRILTEPRNAVVPQYQALFSMDKCELNVNEAALRAIARMALERKT-----GARGLRSIME 577

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++L +  F         V +D + V+  
Sbjct: 578 KLLLEPMFEVPHSDIVAVEVDKDAVQGK 605



 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 116/318 (36%), Gaps = 61/318 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGVGKT 67
           I + LD+Y++GQ  AK+ +A+A+ N ++R        +  + E+  +  L      + + 
Sbjct: 145 IYAYLDKYVVGQSYAKKVLAVAVYNHYKRIYNNIPAGSQQQVEVEKQPTLTPRELEMRRR 204

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
               R  +L     I                   + +     + +  +E R  EV + A 
Sbjct: 205 EDEYRFTKLLQIAGISPHGNALG---------ASMQQ---QTSQHTPQERRGGEVLDSAH 252

Query: 128 INA--EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
            +   ++  +  L    +    R                     +     +S    P   
Sbjct: 253 ADIKLDKSNIILLGPTGSGDGGRRPSA-----------------SACPGGLSLTTPPHPL 295

Query: 186 SV-GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE-- 242
           +V G   L++  ++ +       +  ++  C             D+++V    +Q     
Sbjct: 296 TVAGKTLLAQTLARCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYS 347

Query: 243 ----NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-------- 289
                 GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+            
Sbjct: 348 VEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPEKNSRKLRGE 407

Query: 290 --SINTDHILFIASGAFH 305
              ++T +ILF+ASGAF+
Sbjct: 408 TVQVDTTNILFVASGAFN 425


>gi|146320684|ref|YP_001200395.1| ATP-dependent protease ATP-binding protein ClpX [Streptococcus suis
           98HAH33]
 gi|223932113|ref|ZP_03624117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|253751619|ref|YP_003024760.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|253753521|ref|YP_003026662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|253755654|ref|YP_003028794.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|302023732|ref|ZP_07248943.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05HAS68]
 gi|330832767|ref|YP_004401592.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
 gi|145691490|gb|ABP91995.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           98HAH33]
 gi|223899094|gb|EEF65451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           suis 89/1591]
 gi|251815908|emb|CAZ51522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis SC84]
 gi|251818118|emb|CAZ55912.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis BM407]
 gi|251819767|emb|CAR45665.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           suis P1/7]
 gi|292558274|gb|ADE31275.1| ClpX, ATPase regulatory subunit [Streptococcus suis GZ1]
 gi|329306990|gb|AEB81406.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           ST3]
          Length = 408

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 148/379 (39%), Gaps = 67/379 (17%)

Query: 107 VDVAINIVRESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEI 160
           V++A  I+RE   +EV  + A     + +L+ L         A            +    
Sbjct: 38  VELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF 97

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D   + +V    S+I      G    G   L++  +K +          ++ +    + 
Sbjct: 98  QDSRDENDVDLQKSNILMI---GPTGSGKTFLAQTLAKSLNVPFAIADATALTEAG-YVG 153

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +      +I   E  GI+++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 154 EDVENILLKLLQAADFNIDRAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKI 212

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF-------------------HVSR 308
           +EG+  S            +   ++T +ILFI  GAF                   H +R
Sbjct: 213 IEGTVASVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNR 272

Query: 309 PAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             D                  ++PE+ GR PV   L  L   D   ILT+ ++ L+ QY+
Sbjct: 273 AIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQ 332

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
            L+  + + LDF ED++ A+A+ A+   +     GAR L++++E  + D+ F        
Sbjct: 333 TLLSYDDVELDFDEDALLAIAEKAIERKT-----GARGLRSIIEETMLDVMFEVPGQDNV 387

Query: 410 KTVVIDAEYVRLHIGDFPS 428
           K V +    V         
Sbjct: 388 KRVRVTKAAVDGKEKPLLE 406



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L     P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL+
Sbjct: 57  LADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQ-DSRDENDVDLQKSNILM 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 116 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAE 175

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A       I   + G+       ++    +                  
Sbjct: 176 RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIH 235

Query: 174 SDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-ID 229
            D  N   I GGA  GI  +    L  K++G G   +     +     ++ D+  +  I 
Sbjct: 236 VDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGII 295

Query: 230 MDTVHR 235
            + + R
Sbjct: 296 PELIGR 301


>gi|327542676|gb|EGF29147.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula
           baltica WH47]
          Length = 427

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 71/316 (22%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + E++IE        SN  + G    G   L+   ++++          ++ +       
Sbjct: 116 NGEVEIEK-------SNILLAGPTGSGKTLLARSLARMLNVPFAIGDATTLTEAGYVGED 168

Query: 222 DESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            E+   +L+       ++ Q     GI+++DE DKI + +    I   VS EGVQ+ LL 
Sbjct: 169 VENLLLKLLHAADFDVEAAQR----GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLK 224

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  +            +Y  ++T +ILFI  G F                      
Sbjct: 225 MLEGTVANVPPQGGRKHPEQQYIQLDTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGA 284

Query: 305 ---HVSRPAD--------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
              +   P +              L+PE+ GR PV  +L+ L+      +LT+ +++L+ 
Sbjct: 285 NVRNEQTPGELVAQVQTEDILKFGLIPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVK 344

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L   E   L+FTE+++ A+A  AV+       +GAR L+ +ME V+ DI +   + 
Sbjct: 345 QYQALFAMENCELEFTEEALHAIAKKAVDKG-----VGARGLRGIMEDVMLDIMYDLPEQ 399

Query: 408 QEKTV-VIDAEYVRLH 422
           +   V  ID   V   
Sbjct: 400 EAGKVYTIDEAIVTGK 415



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGPTGV 64
           SPR IV  LD Y+IGQ  AKR +A+A+ N ++R    AD      E+   NILL GPTG 
Sbjct: 75  SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 134

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V  ++R     
Sbjct: 135 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 194

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV +  S N    I   + G+    +  ++    + +          E      D SN 
Sbjct: 195 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 254

Query: 180 -DIPGGASVGILNL 192
             I GG  VGI  +
Sbjct: 255 LFICGGTFVGIEEI 268


>gi|317179825|dbj|BAJ57611.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F32]
          Length = 448

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|29831992|ref|NP_826626.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           avermitilis MA-4680]
 gi|46576506|sp|Q820F8|CLPX_STRAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29609110|dbj|BAC73161.1| putative ATP-dependent Clp Protease ATP binding subunit
           [Streptomyces avermitilis MA-4680]
          Length = 428

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 139/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGGQSREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL  + + 
Sbjct: 333 ALVKQYQRLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ V  ++       D
Sbjct: 388 VPSRKDVARVVITADVVHSNVNPTLIPRD 416



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|317011705|gb|ADU85452.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SouthAfrica7]
          Length = 452

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 115 NHYKRLSFKEKLKKQDNQDSNMELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 174

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 175 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 232

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 233 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 292

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 293 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 352

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 353 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 407

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 408 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 442



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 88  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNMELEHLEEVELS 147

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 207

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 208 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 267

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 268 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 323


>gi|254392446|ref|ZP_05007627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440936|ref|ZP_08215670.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706114|gb|EDY51926.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           clavuligerus ATCC 27064]
          Length = 427

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDR 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 354 PALEAIADQAILRGT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +     + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|254382768|ref|ZP_04998125.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
 gi|194341670|gb|EDX22636.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1]
          Length = 428

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL  + +     ++   VVI A+ VR ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 14/235 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQID 242

Query: 176 ISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLI 228
            +N   I GGA  G+  + E  +   G G    IR   + +   +      + L+
Sbjct: 243 TTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMPEDLV 297


>gi|119713090|gb|ABL97159.1| ATP-dependent Clp protease ATP-binding subunit ClpX [uncultured
           marine bacterium EB0_49D07]
          Length = 414

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 123/300 (41%), Gaps = 70/300 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V+          ++ +              D++ + + 
Sbjct: 107 SNVLLLGPTGSGKTLLAQTLARVLNVPFTIADATTLTEA--------GYVGEDVENIIQK 158

Query: 237 SIQMVENY------GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S   
Sbjct: 159 LLQKCDYDPDKAALGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTVASIPP 218

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    ++  I+T +ILFI  GAF                                 
Sbjct: 219 QGGRKHPQQEFIQIDTSNILFICGGAFSGIDEVIKHRTDNSGIGFGAAVKDTKATVASIV 278

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               P DL     +PE  GR PV   L  L++     IL + ++ L+ QYK L + + + 
Sbjct: 279 ETLEPEDLVKFGLIPEFVGRLPVISTLHELDEEALVRILQEPKNALVNQYKYLFEIDEVE 338

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           LDF  +++  +A  A+   +     GAR L+++ME +L D  F   ++  + V++D   V
Sbjct: 339 LDFRTEALIEIAKRALKRKT-----GARGLRSIMEELLMDTMFELPNVDLEKVIVDENSV 393



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP EI ++LD Y+IGQ+ AK+ +++A+ N ++R +  +     EL   N+LL+GPTG GK
Sbjct: 60  SPLEIFNQLDEYVIGQEKAKKILSVAVYNHYKRLRSNSKKDKIELQKSNVLLLGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II+ L+        ++       DE
Sbjct: 120 TLLAQTLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDPDKAALGIVYIDE 179

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D SN   
Sbjct: 180 IDKIARKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEFIQIDTSNILF 239

Query: 182 PGGAS----VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             G +      ++      S +      K  + +V      L  ++  + 
Sbjct: 240 ICGGAFSGIDEVIKHRTDNSGIGFGAAVKDTKATVASIVETLEPEDLVKF 289


>gi|254779913|ref|YP_003058019.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori B38]
 gi|254001825|emb|CAX30068.1| ATP-dependent Clp protease ATP-binding subunit clpX; ATPase
           subunit/chaperone protein [Helicobacter pylori B38]
          Length = 448

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 59/345 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E    DI F    L+   V I  + V                IL
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 447



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|188528163|ref|YP_001910850.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Shi470]
 gi|188144403|gb|ACD48820.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           Shi470]
          Length = 448

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|189347416|ref|YP_001943945.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           limicola DSM 245]
 gi|189341563|gb|ACD90966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           limicola DSM 245]
          Length = 437

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 141/325 (43%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E S +  ++ +  +     N  + G    G   L++  + ++          
Sbjct: 109 HYKRIDSQEWSHESDEVVIEKS-----NILLIGPTGTGKTLLAQTLANLLEVPFTIADAT 163

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +       ++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 164 SLTEAG-YVGDDVETILARLLHASDFDLERAE-RGIIYVDEIDKIARKSANVSITRDVSG 221

Query: 269 EGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EGS V    K G         +INT +ILFI  GAF          VS+
Sbjct: 222 EGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDKLIAKRVSK 281

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L  L++   R IL
Sbjct: 282 SSMGFGSRVKNKQTGYDPEILRFVTQDDLHEYGLIPEFIGRLPVISTLDPLDEKALRNIL 341

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L+ QYK+L + +G+ L+FTE+++D + D+A++  +     GAR L++V+E V+ 
Sbjct: 342 VEPKNALVKQYKKLFEMDGVELEFTEEALDKVVDIAIDRGT-----GARALRSVLENVMI 396

Query: 399 DISFSASDLQEK-TVVIDAEYVRLH 422
           DI F    L+     +I  + +   
Sbjct: 397 DIMFELPSLKGVHKCIITVDTIENK 421



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 19/293 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTG 63
           SP+ I++ LD+Y++GQ  AK+++++A+ N ++R              +   NILL+GPTG
Sbjct: 80  SPKAIMASLDQYVVGQDIAKKSLSVAVYNHYKRIDSQEWSHESDEVVIEKSNILLIGPTG 139

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   +  + R    
Sbjct: 140 TGKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFDLERAERGIIY 199

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 200 VDEIDKIARKSANVSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTKN 259

Query: 179 FDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                G +   L+      +    MG G + K + +           E  R +  D +H 
Sbjct: 260 ILFICGGAFEGLDKLIAKRVSKSSMGFGSRVKNKQTGYDP-------EILRFVTQDDLHE 312

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             +       +  +   D +  +   N +   +  + +    L E   V  ++
Sbjct: 313 YGLIPEFIGRLPVISTLDPLDEKALRNILVEPKNALVKQYKKLFEMDGVELEF 365


>gi|297380556|gb|ADI35443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
           pylori v225d]
          Length = 448

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+++ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKDLKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|291295951|ref|YP_003507349.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Meiothermus
           ruber DSM 1279]
 gi|290470910|gb|ADD28329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus
           ruber DSM 1279]
          Length = 398

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 52/291 (17%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            +     SN  + G    G   L+E  ++++          ++ +    +  D  + L+ 
Sbjct: 95  PEAEVQKSNVLLIGPTGTGKTLLAETLARMLDVPFAIADATTLTEAG-YVGEDVENVLLR 153

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST- 286
           +       +Q  E  GI+++DE DKI  +         VS EGVQ+ LL ++EG+  +  
Sbjct: 154 LLQAADFDVQAAEK-GIIYIDEIDKIARKSENPSLTRDVSGEGVQQALLKIIEGTVANVP 212

Query: 287 ----------KYGSINTDHILFIASGAFH----------------VSRPA---------- 310
                     ++ ++NT +ILFI  GAF                  +RP           
Sbjct: 213 PQGGRKHPHQEFIALNTKNILFILGGAFDGLERIVQSRVDQNPIGFTRPKKTEEKPEVIP 272

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV V L++L++     ILT+  + LI QY+EL++ EGI L FT 
Sbjct: 273 EDLVRFGLIPEFVGRMPVMVQLEALDEEALVRILTEPRNALIRQYQELLRMEGIELRFTP 332

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
            ++  +A  A+   +     GAR L+ V+E+ + ++ F       K VV D
Sbjct: 333 GALREIARRALKRGT-----GARGLRAVIEKAMVELMFELPTSGIKEVVFD 378



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 19/250 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI S LD+Y+IGQ+  K+ +++A+ N ++R   P     E+   N+LL+GPTG GKT
Sbjct: 59  KPAEIKSFLDQYVIGQELPKKTLSVAVYNHYKRLLHPE---AEVQKSNVLLIGPTGTGKT 115

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            ++  LAR+   PF   + T  TE GYVG +VE ++  L+  A   V+ + +     DE+
Sbjct: 116 LLAETLARMLDVPFAIADATTLTEAGYVGEDVENVLLRLLQAADFDVQAAEKGIIYIDEI 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    +   + G+       ++    + +               + +  N    
Sbjct: 176 DKIARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIALNTKNILFI 235

Query: 183 GGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPE------LMRDESDR---LIDMD 231
            G +   L   +     +      + K      +  PE      L+ +   R   ++ ++
Sbjct: 236 LGGAFDGLERIVQSRVDQNPIGFTRPKKTEEKPEVIPEDLVRFGLIPEFVGRMPVMVQLE 295

Query: 232 TVHRDSIQMV 241
            +  +++  +
Sbjct: 296 ALDEEALVRI 305


>gi|167765599|ref|ZP_02437663.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1]
 gi|167712784|gb|EDS23363.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1]
          Length = 461

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 58/314 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +   + +   D SN  + G    G   L +  ++++          S+ +    +
Sbjct: 145 HYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTYLVKTLARLLKVPLAITDATSLTEAG-YI 203

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             D    L  +     + +   E +GIVF+DE DKI  + + N   VS E VQ+ LL L+
Sbjct: 204 GDDVESVLSKLLQAADNDVDRAE-HGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLL 262

Query: 280 EGSSVSTKYG-----------SINTDHILFIASGAF------------------------ 304
           EG+ V    G           +INT +ILFI  GAF                        
Sbjct: 263 EGAEVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLK 322

Query: 305 ---------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                             R    +PE  GR P+   L+ L K     IL + ++ ++ QY
Sbjct: 323 DCFDEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQY 382

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQ 408
           ++L++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D  
Sbjct: 383 QKLLELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDT 437

Query: 409 EKTVVIDAEYVRLH 422
             +V I  +Y+  H
Sbjct: 438 IGSVTITRDYIENH 451



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 117 PHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTY 176

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V      
Sbjct: 177 LVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV------ 230

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRD---GEISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D +  K  T N+R+V  + ++      +   E+++ V  TS +          
Sbjct: 231 FIDE--IDKIAKKQNT-NSRDVSGESVQQGLLKLLEGAEVEVPVGATSKNAMVPLTTINT 287

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMS 211
              +      F  + G  +K+ ++ +
Sbjct: 288 RNILFICGGAFPNLEGIIKKRLMKKT 313


>gi|81428671|ref|YP_395671.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610313|emb|CAI55362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 417

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 134/314 (42%), Gaps = 59/314 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  ++    E  DT    SN  + G    G   L++  ++++          ++ +    
Sbjct: 95  KRVNQMTVAEKGDTELQKSNIALIGPTGSGKTFLAQTLARILNVPFAIADATTLTEAG-Y 153

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + L+ +       +   E  GI+++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 154 VGEDVENILLKLLQNADFDVDRAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALL 212

Query: 277 PLVEGS--SVSTKYG---------SINTDHILFIASGAFHVSR----------------- 308
            ++EG+  SV  + G          I+T +ILFI  GAF                     
Sbjct: 213 KILEGTIASVPPQGGRKHPQQELIQIDTTNILFIIGGAFDGIETIVKNRLGEKTIGFGSK 272

Query: 309 ---------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   ++PE  GR P+   L+ L + D   ILT+ ++ L+ 
Sbjct: 273 AGQAVDENQSLMQQIVTEDLMQFGIIPEFIGRIPITAALEKLTEDDLVRILTEPKNALVK 332

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY +LM  + + L+FT +++ A+A +A+  N+     GAR L++++E V+ D+ F     
Sbjct: 333 QYSKLMALDDVELEFTPEALHAIAHLAIERNT-----GARGLRSIIEEVMMDMMFDVPSR 387

Query: 408 QE-KTVVIDAEYVR 420
           ++   V++  E V 
Sbjct: 388 EDVVKVLVTKEAVD 401



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            PREI++ L+ Y+IGQ +AK+A+++A+ N ++R            EL   NI L+GPTG 
Sbjct: 64  KPREILAILNDYVIGQTEAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + R     
Sbjct: 124 GKTFLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADFDVDRAERGIIYI 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    +            +      D +N 
Sbjct: 184 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDTTNI 243

Query: 180 -DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
             I GGA  GI  + +        G   K   +V +    + +  ++ L+ 
Sbjct: 244 LFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQ 294


>gi|78186393|ref|YP_374436.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           luteolum DSM 273]
 gi|123730111|sp|Q3B5I8|CLPX_PELLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78166295|gb|ABB23393.1| ClpX, ATPase regulatory subunit [Chlorobium luteolum DSM 273]
          Length = 441

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 136/329 (41%), Gaps = 65/329 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E    + +I +  +     N  + G    G   L++  + ++          
Sbjct: 113 HYKRIDSQEWRHDDDEIVIEKS-----NIMLIGPTGTGKTLLAQTLANLLEVPFSIVDAT 167

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 168 SLTEAG-YVGDDVETILARLLHASDFNLERAE-RGIIYVDEIDKIARKSANVSITRDVSG 225

Query: 269 EGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+ V    K G         +INT +ILFI  GAF          +S+
Sbjct: 226 EGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDRLIARRISK 285

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L  L+    R IL
Sbjct: 286 SSMGFGSSVTDKQSGYDPEILKHVTQDDLHEYGLIPEFIGRLPVLSTLDPLDADALRSIL 345

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ L+ QY +L + +G+ L+FT ++++ +  +A+   +     GAR L++V+E V+ 
Sbjct: 346 VEPKNALVKQYGKLFEMDGVELEFTPEALERVVAIAIERGT-----GARALRSVLENVMI 400

Query: 399 DISFSASDLQE-KTVVIDAEYVRLHIGDF 426
           DI F    ++     +I  E +       
Sbjct: 401 DIMFELPTMKGVGKCIITEEVIDRKGEPI 429



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 19/293 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTG 63
           SP+ I+  L++Y++GQ+ AKR++A+A+ N ++R        D+    +   NI+L+GPTG
Sbjct: 84  SPKAILESLNQYVVGQERAKRSLAVAVYNHYKRIDSQEWRHDDDEIVIEKSNIMLIGPTG 143

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +   +  + R    
Sbjct: 144 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAERGIIY 203

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 204 VDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKN 263

Query: 179 FDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                G +   L+      +    MG G     + S           E  + +  D +H 
Sbjct: 264 ILFICGGAFEGLDRLIARRISKSSMGFGSSVTDKQSGYDP-------EILKHVTQDDLHE 316

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             +       +  L   D + A    + +   +  + +    L E   V  ++
Sbjct: 317 YGLIPEFIGRLPVLSTLDPLDADALRSILVEPKNALVKQYGKLFEMDGVELEF 369


>gi|295088061|emb|CBK69584.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides
           xylanisolvens XB1A]
          Length = 414

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 94  NHYKRLLQKDSGDDVEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 145 ATVLTEAG-YVGEDIESILTRLLQVADYNVPEAEQ-GIVFIDEIDKIARKGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 203 SGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRL 262

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR PV  +L  L++   R I
Sbjct: 263 NTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRDALRAI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +GI L F +   + + D AV        +GAR L++++E ++
Sbjct: 323 LTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDKAVEYK-----LGARGLRSIVETIM 377

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F      +K   +  +Y ++ +  
Sbjct: 378 MDVMFEIPSEDKKEYKVMLDYAKMQLEK 405



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + L     P EI   LD+Y+IGQ DAKR +++++ N ++R  Q  +    E+   NI++V
Sbjct: 59  LNLKELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMV 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+ VA   V E+  
Sbjct: 119 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 239 NTKNILFICGGAFDGIE 255


>gi|269123535|ref|YP_003306112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
 gi|268314861|gb|ACZ01235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Streptobacillus moniliformis DSM 12112]
          Length = 410

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 150/360 (41%), Gaps = 67/360 (18%)

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           +Q     +E I+     K   S       K+L   +  D +I+          SN  + G
Sbjct: 61  KQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKVDNDIE-------MQKSNILLIG 113

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G   L++  +K++          ++ +    +  D  + L+ +       IQ+ + 
Sbjct: 114 PTGSGKTLLAQTLAKILDVPLAIADATTITEAG-YVGDDVENVLLKLIKAADYDIQLAQ- 171

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290
            GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  SV  + G          
Sbjct: 172 RGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTISSVPPQGGRKHPNQEMIE 231

Query: 291 INTDHILFIASGAF--------------------HVSRPADL------------------ 312
           I+T +ILFI  GAF                    ++ +  DL                  
Sbjct: 232 IDTTNILFIVGGAFEGLESKIKRRLNKKQIGFGLNLDKNEDLDDMTIFEHVLPEDIRKFG 291

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE+ GR PV   L  LNK     ILT  ++ +I QYK+  + EG+ L F ED+++ +A
Sbjct: 292 IIPELIGRLPVITALSELNKEALVSILTKPKNAIIKQYKKYFEIEGVELIFEEDAVEEIA 351

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSET 430
           ++A+        IGAR L++++E  + D+ +     ++ K VVI  + +      F    
Sbjct: 352 ELALKRK-----IGARGLRSIIENTMLDLMYEIPSKEDIKKVVITKDMIIEKNELFIKSE 406



 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 11/244 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGV 64
             P++I  +LD YIIGQ+ AK+ +++A+ N ++R       D   E+   NILL+GPTG 
Sbjct: 58  LKPKQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKVDNDIEMQKSNILLIGPTGS 117

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT +++ LA++   P    + T  TE GYVG +VE ++  L+  A   ++ ++R  +  
Sbjct: 118 GKTLLAQTLAKILDVPLAIADATTITEAGYVGDDVENVLLKLIKAADYDIQLAQRGIIY- 176

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                  + I         TS TR+V  + ++   +   E  I  +              
Sbjct: 177 ------IDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTIS-SVPPQGGRKHPNQEM 229

Query: 185 ASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             +   N+  +          K K R++ ++    L  D+++ L DM        + +  
Sbjct: 230 IEIDTTNILFIVGGAFEGLESKIKRRLNKKQIGFGLNLDKNEDLDDMTIFEHVLPEDIRK 289

Query: 244 YGIV 247
           +GI+
Sbjct: 290 FGII 293


>gi|125624160|ref|YP_001032643.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|38257645|sp|Q8GJP6|CLPX_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7546983|gb|AAF63738.1|AF236863_2 protease ClpX [Lactococcus lactis subsp. cremoris MG1363]
 gi|24935310|gb|AAN64303.1| ClpX protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492968|emb|CAL97931.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300070936|gb|ADJ60336.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 411

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 152/374 (40%), Gaps = 64/374 (17%)

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV-FRKKLRDGE 159
           ++   +++  +   ++S   EV+    +   + + + ++G+        V      +   
Sbjct: 38  ELSTRILEEELKEEQDSEMLEVKTPKEMF--DHLNEYVIGQEKAKRALAVAVYNHYKRIN 95

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            +  +I  ++    S   N  + G    G   L++  +K +          S+ +    +
Sbjct: 96  FTASKIAEDIELQKS---NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YV 151

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 152 GEDVENILLKLLQASDFNIERAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLK 210

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  S            +   I+T +ILFI  GAF                      
Sbjct: 211 IIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANN 270

Query: 305 ---------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                             +   L+PE  GR P+   L+ L + D   ILT+ ++ LI QY
Sbjct: 271 KKLSDEDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQY 330

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L+  + + L+F + ++ A+A  A+   +     GAR L++++E V+ DI F     +E
Sbjct: 331 KQLLLFDNVELEFKDGALMAIAKKAIERKT-----GARGLRSIIEEVMMDIMFEVPSHEE 385

Query: 410 -KTVVIDAEYVRLH 422
              V+I    V   
Sbjct: 386 ITKVIITEAVVDGK 399



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 11/237 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILL 58
           ++    +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A       EL   NILL
Sbjct: 55  EMLEVKTPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + 
Sbjct: 115 IGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAE 174

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 174 SDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            D  N   I GGA  GI  +    L  K++G G   K          E++ ++  + 
Sbjct: 235 IDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKF 291


>gi|157165299|ref|YP_001467559.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus
           13826]
 gi|112801142|gb|EAT98486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           concisus 13826]
          Length = 410

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 128/301 (42%), Gaps = 57/301 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++ +          S+ +    +  D  + L  +      
Sbjct: 109 SNILLVGPTGSGKTLMAQTLARFLDVPIAICDATSLTEAG-YVGEDVENILTRLLQAANG 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 168 DVKKAEQ-GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 226

Query: 288 ----YGSINTDHILFIASGAF--------------------------------HVSRPAD 311
               +  I+T +ILF+  GAF                                 +  P D
Sbjct: 227 PNQDFIQIDTTNILFVCGGAFDGLLDIIERRVGKNVLGFNQEKRGKNEKENLLSLLEPDD 286

Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L     +PE+ GR  V   L  + K D   ILT+ ++ ++ QY++L   +G  L F +++
Sbjct: 287 LVKYGLIPELIGRLHVVATLNEITKEDMVKILTEPKNAILKQYQKLCAIDGATLKFDDEA 346

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           ++ +A +A+   +     GAR L+++ME ++ DI +   +L++  +VI  E V+      
Sbjct: 347 LEEIASLAIERKT-----GARGLRSIMEELMTDIMYDLPELKDYDIVISKETVKDKAKPI 401

Query: 427 P 427
            
Sbjct: 402 L 402



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 112/231 (48%), Gaps = 10/231 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
             +P+E+ + LD Y+IGQ  AK+  ++ + N ++R    +D++D  E+   NILLVGPTG
Sbjct: 59  KLTPKELKAVLDNYVIGQDRAKKVFSVGVYNHYKRIFKQSDIKDDTEISKSNILLVGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+++ +    
Sbjct: 119 SGKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANGDVKKAEQGIVF 178

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A ++    I   + G+       ++    + +                 D +N
Sbjct: 179 VDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDTTN 238

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
              + GGA  G+L++ E  +   V+G  ++K+ +   +     L  D+  +
Sbjct: 239 ILFVCGGAFDGLLDIIERRVGKNVLGFNQEKRGKNEKENLLSLLEPDDLVK 289


>gi|169831634|ref|YP_001717616.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638478|gb|ACA59984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 417

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 133/320 (41%), Gaps = 60/320 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++ +          S+ +    +  D  + L
Sbjct: 98  KLEDVELQKSNIVMLGPTGSGKTLLAQTLARFLNVPFAIADATSLTEAG-YVGEDVENIL 156

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 157 LKLIQAADYDVEKAEK-GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 215

Query: 286 T-----------KYGSINTDHILFIASGAF---------HVSR----------------- 308
                       ++  ++T +ILFI  GAF          V++                 
Sbjct: 216 VPPQGGRKHPHQEFIQLDTTNILFICGGAFEGIDKIIQSRVAKKTMGFGAELTLKRDRKL 275

Query: 309 --------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR PV V L  LN+ D   IL +  + L+ QY++L + 
Sbjct: 276 GDILRNILPQDLLKYGLIPEFVGRLPVIVTLDPLNQEDLVRILVEPRNALVKQYEKLFEI 335

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVI 414
           +G+ L+F E+++ A+A+ A+  N+     GAR L+ ++E ++ ++ +      +     I
Sbjct: 336 DGVALEFQEEALQAIAEEAIRRNT-----GARGLRAILEEIMLNVMYDIPSRGDVAKCTI 390

Query: 415 DAEYVRLHIGDFPSETDMYH 434
             E V           +   
Sbjct: 391 SRETVVNRENPLIITVERSK 410



 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           ++L     PREI   LD+Y+IGQ+ AK+ +A+A+ N ++R  L   L D EL   NI+++
Sbjct: 53  LELRDIPKPREIKDYLDQYVIGQEYAKKILAVAVYNHYKRINLGGKLEDVELQKSNIVML 112

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 113 GPTGSGKTLLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 172

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DEV + A  +    I   + G+       ++    +                   
Sbjct: 173 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 233 DTTNILFICGGAFEGID 249


>gi|315641097|ref|ZP_07896176.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           italicus DSM 15952]
 gi|315483105|gb|EFU73622.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           italicus DSM 15952]
          Length = 416

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 127/301 (42%), Gaps = 58/301 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E  D     SN  + G    G   L++  +K +          S+ +    +  D  + L
Sbjct: 105 EEEDVELQKSNICLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YVGEDVENIL 163

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  +N GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +
Sbjct: 164 LKLLQAADFDVEYAQN-GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTIAN 222

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       +   ++T +ILFI  GAF                              
Sbjct: 223 VPPQGGRKHPHQEMIQLDTTNILFIVGGAFDGIETIVKNRMGEKTIGFGSNNRKLPEKES 282

Query: 309 ------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P DL     +PE  GR PV   L  L   D   ILT+ ++ L+ QYK+L+  + 
Sbjct: 283 TMKYIIPEDLLKFGLIPEFIGRLPVMAALDKLTVDDLVRILTEPKNALVKQYKKLLSLDE 342

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
             L F +D++ A+A  A+  N+     GAR L++++E ++ DI F     +E + V+I  
Sbjct: 343 TELVFEDDALRAIAQKAIERNT-----GARGLRSIIEEIMMDIMFEVPSQEEIEKVIITK 397

Query: 417 E 417
           E
Sbjct: 398 E 398



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 16/258 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPT 62
            P+E++  L+ Y+IGQ  AK+A+++A+ N ++R      +   +   EL   NI L+GPT
Sbjct: 63  KPQELLKILNEYVIGQDRAKKALSVAVYNHYKRISANLDKSGEEEDVELQKSNICLIGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR---- 118
           G GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  ++    
Sbjct: 123 GSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVEYAQNGII 182

Query: 119 -RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A       I   + G+       ++    + +                 D +
Sbjct: 183 YIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEMIQLDTT 242

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           N     G +   +        ++ +   +K             ++ + + I  + + +  
Sbjct: 243 NILFIVGGAFDGIET------IVKNRMGEKTIGFGSNNRKLPEKESTMKYIIPEDLLKFG 296

Query: 238 IQMVENYGIVFLDEFDKI 255
           +       +  +   DK+
Sbjct: 297 LIPEFIGRLPVMAALDKL 314


>gi|326203840|ref|ZP_08193702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           papyrosolvens DSM 2782]
 gi|325985938|gb|EGD46772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           papyrosolvens DSM 2782]
          Length = 431

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 60/310 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++ +D     SN  + G    G   L++  +K++          S+ +    +  D  +
Sbjct: 99  DVKTSDIELQKSNIVMLGPTGSGKTFLAQTLAKILNVPFAIADATSLTEAG-YVGEDVEN 157

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 158 ILLRLIQAADYDIEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTL 216

Query: 284 VST-----------KYGSINTDHILFIASGAF---------HVSRPA------------- 310
            S            ++  I+T +ILFI  GAF          + + +             
Sbjct: 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESNKDK 276

Query: 311 -----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR P+ V L+SL+K+    ILT+ ++ L+ QY++L 
Sbjct: 277 DVGQLLKDILPQDLLKFGLIPEFVGRLPIVVTLQSLDKNALVQILTEPKNALVKQYQKLF 336

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + + ++L+  +++++ +A+ A+  N+     GAR L+ ++E  +  + +    +   +  
Sbjct: 337 EMDDVLLEIQDEALELIAEKAIERNT-----GARGLRAILEEAMMGVMYDIPSMTNVEKC 391

Query: 413 VIDAEYVRLH 422
           +I  E +  H
Sbjct: 392 IIGKEVIAEH 401



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y++GQ  AKR++++A+ N ++R        D EL   NI+++GPTG GK
Sbjct: 63  KPKEIKEILDQYVVGQDTAKRSLSVAVYNHYKRINSDVKTSDIELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +     DE
Sbjct: 123 TFLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAADYDIEKAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    L                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   ++  +     K       K      +     L       L+
Sbjct: 243 ICGGAFDGIDKIIQNRIGKKSLGFGAKIESNKDKDVGQLLKDILPQDLL 291


>gi|333029343|ref|ZP_08457404.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
 gi|332739940|gb|EGJ70422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides
           coprosuis DSM 18011]
          Length = 413

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 65/319 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            + SD E++IE        SN  + G    G   L+   +K +           + +   
Sbjct: 102 QDNSDDEVEIEK-------SNIIMVGSTGTGKTLLARTIAKQLNVPFTIVDATVLTEAG- 153

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +  V    ++  E  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 154 YVGEDIESILTRLLQVADYDVEKAEK-GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGL 212

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------HVS---- 307
           L L+EGS ++            K   +NT +ILFI  GAF             HV     
Sbjct: 213 LKLLEGSIINVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERRIAQRLNTHVVGYNA 272

Query: 308 ---------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR P+  +L  L++   R ILT+ ++++I
Sbjct: 273 SRDTAKVDMTNLIKYITPQDLKSFGLIPEIIGRLPILTYLNPLDRDALRRILTEPKNSVI 332

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q ++L++ +G+ L F ED  D + D A+        +GAR L++++E ++ D+ +    
Sbjct: 333 KQNQKLLQMDGVDLKFNEDVFDYIVDKAIEFK-----LGARGLRSIVETIMIDVMYEVPS 387

Query: 407 LQEKTVVIDAEYVRLHIGD 425
           +  K   +  +Y +  +  
Sbjct: 388 MDVKEYAVTLDYAKKQLEK 406



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           + +     P E+   LD Y+IGQ DAKR +++A+ N ++R  Q  +D   E+   NI++V
Sbjct: 60  LTMEDLPKPSEVKQFLDDYVIGQDDAKRYLSVAVYNHYKRILQDNSDDEVEIEKSNIIMV 119

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+    PF  V+ T  TE GYVG ++E I+  L+ VA   V ++ +
Sbjct: 120 GSTGTGKTLLARTIAKQLNVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVEKAEK 179

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIINVPPQGGRKHPDQKMIPV 239

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 240 NTKNILFICGGAFDGIE 256


>gi|312140359|ref|YP_004007695.1| clp peptidase ATP-binding subunit clpx [Rhodococcus equi 103S]
 gi|325676031|ref|ZP_08155714.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
           ATCC 33707]
 gi|311889698|emb|CBH49015.1| Clp peptidase ATP-binding subunit ClpX [Rhodococcus equi 103S]
 gi|325553269|gb|EGD22948.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
           ATCC 33707]
          Length = 425

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L   +G+ L+F+ 
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKDSLVTILSEPKNALVKQYTRLFDMDGVELEFSA 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+ AE V  ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTAETVNDNV 407



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDRGRDARGETVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|317010052|gb|ADU80632.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori India7]
          Length = 448

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 134/345 (38%), Gaps = 59/345 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+     D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQNNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E    DI F    L+   V I  + V                IL
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 447



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQNNQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|258592922|emb|CBE69231.1| ATP-dependent Clp protease ATP-binding subunit clpX [NC10 bacterium
           'Dutch sediment']
          Length = 415

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + ++ +  V   
Sbjct: 110 SNILLIGPTGCGKTLLAQTLAKILDVPFTIADATTLTEAG-YVGEDVENIILRLLQVADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 169 DVERAE-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +Y  ++T +ILFI  GAF                                     +P
Sbjct: 228 PQQEYLQVDTTNILFICGGAFVGLEKAIEHRTGQKSMGFGAEIQARRGRRISELLAHVQP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE+ GR PV   +  L++     IL + ++ L+ QY+     E + L FT+
Sbjct: 288 EDLLRYGLIPELVGRLPVMAVVHELDEKALVRILVEPKNALLRQYQRFFDFEHVKLTFTD 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D+I A+A  A    +     GAR L+ ++E ++ DI +           +I+ E V    
Sbjct: 348 DAISAVAQEAAKRQT-----GARGLRAILEEIMLDIMYEIPSQSGIAECIINRETVVERK 402

Query: 424 GDFP 427
               
Sbjct: 403 APII 406



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI S LD+Y+IGQ  AK+++A+A+ N ++R        D EL   NILL+GPTG GK
Sbjct: 63  KPSEIKSILDQYVIGQDRAKKSLAVAVHNHYKRVNARMTFDDVELTKSNILLIGPTGCGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE II  L+ VA   V  + R     DE
Sbjct: 123 TLLAQTLAKILDVPFTIADATTLTEAGYVGEDVENIILRLLQVADYDVERAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          +      D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEYLQVDTTNILF 242

Query: 182 PGGA-----SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
             G         I + +   S   G+  + +    + +    +  +
Sbjct: 243 ICGGAFVGLEKAIEHRTGQKSMGFGAEIQARRGRRISELLAHVQPE 288


>gi|260887081|ref|ZP_05898344.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|330839142|ref|YP_004413722.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|260863143|gb|EEX77643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
 gi|329746906|gb|AEC00263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sputigena ATCC 35185]
          Length = 425

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 67/331 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   +    E++++        SN  + G    G   L++  +K++          
Sbjct: 92  HYKRINRTQGKADEVELQK-------SNILMIGPTGSGKTLLAQTLAKILNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 145 SLTEAG-YVGEDVENILLKLIQAADYDVEKAEK-GIIYIDEIDKIARKSENPSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFHVSR--------- 308
           EGVQ+ LL ++EG+  S            +   I+T +ILF+  GAF             
Sbjct: 203 EGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTTNILFLCGGAFDGIEKIIEARLGK 262

Query: 309 -------------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL     +PE  GR P+ V L++L +     IL
Sbjct: 263 KNMGFGAEIESKVERNIGETLRHILPEDLLKNGLIPEFIGRLPIVVTLEALGEDTLVRIL 322

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ L+ QY++L++ +G+ LDF E+++  +A  A+   +     GAR L++++E ++ 
Sbjct: 323 TEPKNALVKQYQKLLEMDGVKLDFDEEALHLIAKEALKRKT-----GARGLRSIIESIMR 377

Query: 399 DISFSASDLQEKT-VVIDAEYVRLHIGDFPS 428
           ++ +    +   +   +  E +        +
Sbjct: 378 NVMYEVPSVDGASHCRVTKEVISDKKDPVLT 408



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILL 58
           ++L     P+EI   LD+Y+IGQ++AK+++++A+ N ++R        DE  L   NIL+
Sbjct: 56  VELKDVPKPKEIRQILDQYVIGQEEAKKSLSVAVYNHYKRINRTQGKADEVELQKSNILM 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++ 
Sbjct: 116 IGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAE 175

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +     DE+ + A  +    I   + G+       ++    +                  
Sbjct: 176 KGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQ 235

Query: 174 SDISNF-DIPGGASVGILNLSE 194
            D +N   + GGA  GI  + E
Sbjct: 236 IDTTNILFLCGGAFDGIEKIIE 257


>gi|304437033|ref|ZP_07396996.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369984|gb|EFM23646.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 421

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 148/350 (42%), Gaps = 64/350 (18%)

Query: 133 RILD-ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           RILD  ++G+     +  V          + +  + +V    S++      G    G   
Sbjct: 69  RILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMI---GPTGSGKTL 125

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L++  ++++          S+ +    +  D  + L+ +       I+  +  GI+++DE
Sbjct: 126 LAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDIEKAQ-RGIIYIDE 183

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS--VSTKYG---------SINTDHILF 298
            DKI  +     I   VS EGVQ+ LL ++EG++  V  + G          I+T +ILF
Sbjct: 184 IDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQIDTTNILF 243

Query: 299 IASGAF--------------------------------HVSR--PADL-----LPEIQGR 319
           I  G+F                                 +S+  P DL     +PE  GR
Sbjct: 244 ICGGSFDGLEEIIESRLGKKQMGFGAEVRSKRRVTVGASLSKIIPEDLMKNGLIPEFIGR 303

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV V L SL++     ILT+ ++ L+ Q+++L++ +G+ L F ED++  +A  A+   +
Sbjct: 304 LPVVVTLNSLDEEALVRILTEPKNALVKQFQKLLELDGVRLTFEEDALHLIAKEALTHKT 363

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPS 428
                GAR L+ ++E ++ ++ +    +   T   +  + +  H     +
Sbjct: 364 -----GARGLRAIVEGIMRNVMYEVPSIHGVTACQVTKDVIVNHSAPILT 408



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 12/231 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVG 65
            P+EI   LD+Y+IGQ +AK+++++A+ N ++R       +   EL   N+L++GPTG G
Sbjct: 63  KPKEIRRILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++                 +      D +N  
Sbjct: 183 EIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
            I GG+  G+  + E          G+  + K R++V     +++ ++  +
Sbjct: 243 FICGGSFDGLEEIIESRLGKKQMGFGAEVRSKRRVTVGASLSKIIPEDLMK 293


>gi|317014767|gb|ADU82203.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Gambia94/24]
          Length = 452

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 115 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 174

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 175 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 232

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 233 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 292

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 293 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 352

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 353 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-----GARGLRAI 407

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 408 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 442



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 88  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 147

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 207

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 208 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 267

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 268 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 323


>gi|303287324|ref|XP_003062951.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455587|gb|EEH52890.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 371

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 91/431 (21%), Positives = 157/431 (36%), Gaps = 110/431 (25%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------LPADLRD 49
           +P+E+V  LD +++GQ  AK+ +A+A+ N + R +                   P +   
Sbjct: 6   TPKEMVKMLDEHVVGQTHAKKVLAVAVFNHYSRVRAEAEAASSSSSASSGAASCPTEAAW 65

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
                N++L GPTG GKT +++ LA     P +  + T  T+ GYVG +VE ++  L+  
Sbjct: 66  PADKSNVVLCGPTGCGKTLLAKTLASFVDVPIVIADATTLTQAGYVGEDVESLLYKLLQE 125

Query: 110 AINIVRESRR--------DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS 161
           A   V  + R        D++  +A   A  R +    G+       ++    + +    
Sbjct: 126 ARFDVELAERGIVYIDEIDKLTRKAENVAITRDV---SGEGVQQALLKMVEGCVVNVPEK 182

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
               +     T  D +N     G +         FS +    R ++    V +      R
Sbjct: 183 GGRKNPRGEFTQVDTTNILFVCGGA---------FSGLETQVRHRRAESLVGRRPVRPRR 233

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
               +  D D    D+++ VE          D I                   L+P   G
Sbjct: 234 RRVPKRADAD----DALERVEAC--------DFIA----------------YGLIPEFVG 265

Query: 282 S-SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
              V+    S+N D ++ +                  GR                     
Sbjct: 266 RFPVAVPLRSLNEDELVRVLMTPRR----------AIGR--------------------- 294

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
                  QY+ +MK  G+ L+FT+ ++ A A  A+  N+     GAR L+T++ER+L D 
Sbjct: 295 -------QYQRMMKMLGVELEFTDGAMWATARAALRRNT-----GARGLRTLVERLLVDA 342

Query: 401 SFSASDLQEKT 411
            +    L E  
Sbjct: 343 MYEVPGLAEAR 353


>gi|158521239|ref|YP_001529109.1| ATPase [Desulfococcus oleovorans Hxd3]
 gi|158510065|gb|ABW67032.1| ATPase AAA-2 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 597

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 77/421 (18%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDEL--MPKNIL 57
             F+  P E+++ LD+YII Q  AK+ +A  +   + R +  A     R+ +  +  N+L
Sbjct: 56  FHFDLKPEEMIAYLDQYIIRQDQAKKVLATKICTHFNRVRHQALWNRTRNMVGGIKNNVL 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTGVGKT + R +A+  G PF+K + TKF+E GYVG +VE ++RDLV  A N +  +
Sbjct: 116 MIGPTGVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADNDIERA 175

Query: 118 RRDEVR-EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +   +  ++    A  R    L+G   + +  +     L +    + E++++V      +
Sbjct: 176 QFGIIYIDEIDKIASSR---GLMGPDVSRSGVQRALLTLME----ETEVEMKVPHDPVSV 228

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                        +   E F K     ++                          TV+  
Sbjct: 229 -------------MQEVEQFRKTGKREKR--------------------------TVNTR 249

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  + +     L E   I  R S   IG   +       P      V ++      D  
Sbjct: 250 NILFIMSGAFNGLQEI--IGKRLSRQAIGFGAKIQDPSDDPWEIMQHVRSE------DLT 301

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
            F                E  GR PVR   +SL ++D   IL +  + ++L  K      
Sbjct: 302 EF------------GFEAEFVGRLPVRAVFESLTEADLFAILKNPSNPIVLSKKMDFAAY 349

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I + F + ++  LA  A    +     GAR L   +ER L                +  
Sbjct: 350 DIDVKFADAALAGLAKNAFQEKT-----GARGLVNAVERALLAFESRLPSTSATVFPVTD 404

Query: 417 E 417
           E
Sbjct: 405 E 405


>gi|21672725|ref|NP_660792.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008300|sp|Q8K989|CLPX_BUCAP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21623369|gb|AAM68003.1| ATP-dependent Clp protease ATP-binding subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
          Length = 427

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 141/333 (42%), Gaps = 81/333 (24%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             +++R+   +   +++         SN  + G    G   L+E  +K++          
Sbjct: 96  HYQRIRNVSKNKDNVEL-------GKSNILLIGPTGSGKTLLAETLAKLLNVPFSIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
           ++ +              D++ V +  +Q  E        GIV++DE DKI  +     I
Sbjct: 149 TLTEA--------GYVGEDVENVIQKLLQKCEYNVKKAELGIVYIDEIDKISRKSDNPSI 200

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-----V 306
              VS EGVQ+ LL L+EG+  S            ++  +NT +ILFI +GAF      +
Sbjct: 201 TRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQVNTANILFICAGAFSELSKII 260

Query: 307 SRPAD------------------------------------LLPEIQGRFPVRVHLKSLN 330
           S+  D                                    L+PE  GR P+   LK LN
Sbjct: 261 SKRIDTGNTIGFNCNLKKQKKKKSEQYFLQQVQSKDLIKFGLIPEFIGRLPIITILKELN 320

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           ++    IL   ++ LI QY+ L   E + L+FT++++ ++A  A++  +     GAR L+
Sbjct: 321 ETALVQILCKPKNALIKQYQTLFNLEKVKLEFTKEAVTSIAKKALSKKT-----GARGLR 375

Query: 391 TVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +++E +L DI +    ++  + ++ID   V  H
Sbjct: 376 SIIENILLDIMYELPSMKNVEKILIDESVVNSH 408



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           +L++  +P EI   LD Y+IGQ   K+ +++A+ N ++R +  +  +D  EL   NILL+
Sbjct: 61  ELSYLPTPHEIKKHLDNYVIGQNHTKKVLSVAVYNHYQRIRNVSKNKDNVELGKSNILLI 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT ++  LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 121 GPTGSGKTLLAETLAKLLNVPFSIADATTLTEAGYVGEDVENVIQKLLQKCEYNVKKAEL 180

Query: 120 DEV 122
             V
Sbjct: 181 GIV 183


>gi|237725285|ref|ZP_04555766.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D4]
 gi|229436551|gb|EEO46628.1| ATP-dependent protease ATP-binding subunit [Bacteroides dorei
           5_1_36/D4]
          Length = 416

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+  +  D EI+          SN  + G    G   L+   +K++        
Sbjct: 96  NHYKRLLQKVDKDDIEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 146

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 147 ATVLTEAG-YVGEDIESLLTRLLQVADYNVAEAE-RGIVFIDEIDKIARKGDNPSITRDV 204

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 205 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERKIAQRL 264

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR P+  +L  L+++  R I
Sbjct: 265 NTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNI 324

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D A+        +GAR L++++E ++
Sbjct: 325 LTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDKAIEYK-----LGARGLRSIVETIM 379

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F     + K   +  ++ +  +G 
Sbjct: 380 MDVMFEIPSQKAKKYEVTLDFAKHQMGK 407



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L     P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++V
Sbjct: 61  LNLKELPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMV 120

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 121 GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 241 NTKNILFICGGAFDGIE 257


>gi|111018379|ref|YP_701351.1| ATP-dependent protease ATP-binding subunit [Rhodococcus jostii
           RHA1]
 gi|226360500|ref|YP_002778278.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodococcus opacus
           B4]
 gi|123145276|sp|Q0SGZ3|CLPX_RHOSR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763859|sp|C1AVQ3|CLPX_RHOOB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|110817909|gb|ABG93193.1| ATP-dependent Clp protease ATP-binding subunit: ClpX [Rhodococcus
           jostii RHA1]
 gi|226238985|dbj|BAH49333.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus
           opacus B4]
          Length = 426

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF---------HVSR-------------------------P 309
              ++  I+T ++LFI +GAF          V +                         P
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L   +G+ L+FT 
Sbjct: 293 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTT 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL  + +      + + VV+ AE V  ++
Sbjct: 353 DALEAIADQAILRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVEKVVVSAETVNDNV 407



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIRDFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|255029338|ref|ZP_05301289.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes LO28]
          Length = 192

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 124/183 (67%), Gaps = 6/183 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTSS 174
            VR +A  NAE+R++  L        T         F    +  E  ++E+D E+ +  S
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183

Query: 175 DIS 177
            I 
Sbjct: 184 QIE 186


>gi|308062658|gb|ADO04546.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Cuz20]
          Length = 448

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|317013160|gb|ADU83768.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Lithuania75]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLLGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLLGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|296184878|ref|ZP_06853289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
 gi|296050660|gb|EFG90083.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
          Length = 429

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNSDY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 DIERAE-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMP 286

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+ V L +L+K+    IL + ++ L+ QYK L + + + LDF E
Sbjct: 287 GDLLKFGLIPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++A+A+ AV       D GAR L+ ++E  ++DI F     +E   VVI+ + +    
Sbjct: 347 EALEAIANEAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTIETKK 401

Query: 424 GDFP 427
            +  
Sbjct: 402 PELI 405



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +T    P EI + LD+Y+IGQ +AK+++A+A+ N ++R    A+  D EL   NILL+
Sbjct: 55  VDMTSLPKPIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + R
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNSDYDIERAER 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +N   I GGA  G+  + E  ++V   G   +I+   +K   +L+++
Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQE 283


>gi|261837486|gb|ACX97252.1| ATP-dependent C1p protease [Helicobacter pylori 51]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 21/241 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E      D S+       +   L                + +MS ++    L   ++  L
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDL 323

Query: 228 I 228
           +
Sbjct: 324 V 324


>gi|308064149|gb|ADO06036.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori Sat464]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|308185155|ref|YP_003929288.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
 gi|308061075|gb|ADO02971.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori SJM180]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|217032416|ref|ZP_03437910.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
 gi|298737033|ref|YP_003729563.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           pylori B8]
 gi|216945895|gb|EEC24513.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128]
 gi|298356227|emb|CBI67099.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           pylori B8]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|328882448|emb|CCA55687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptomyces
           venezuelae ATCC 10712]
          Length = 427

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDR 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ VR ++
Sbjct: 354 PALEAIADQAILRGT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +     + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|326382828|ref|ZP_08204518.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198418|gb|EGD55602.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 429

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 119 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 177

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 178 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 236

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------HVSR--P 309
              ++  I+T ++LFI +GAF                                H +   P
Sbjct: 237 PHQEFIQIDTTNVLFIVAGAFAGLEKVVDERIGKRGIGFGNDVPSKDKVDTTDHFAEVMP 296

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     IL++ ++ L+ QY  L   + + L+F++
Sbjct: 297 EDLIKFGLIPEFIGRLPVVASVANLDKEALVSILSEPKNALVKQYVRLFDMDNVELEFSQ 356

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL  + +      +   VV+  E VR ++
Sbjct: 357 DALEAVADQAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTGETVRDNV 411



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDE 50
           +KL     P EI   LD Y++GQ  AKR +A+A+ N ++R Q           P     E
Sbjct: 56  VKLDELPKPAEIRDFLDNYVVGQDSAKRTLAVAVYNHYKRIQAGEKKAGDKRSPGAEPVE 115

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A
Sbjct: 116 LAKSNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175

Query: 111 INIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRK-----KLRDGEI 160
              V+ +       DEV + A  +    I   + G+       ++          + G  
Sbjct: 176 DYDVKRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRK 235

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
              +  I++  T+          G    +           G+    K ++     + E+M
Sbjct: 236 HPHQEFIQIDTTNVLFIVAGAFAGLEKVVDERIGKRGIGFGNDVPSKDKVDTTDHFAEVM 295

Query: 221 RDESDRL 227
            ++  + 
Sbjct: 296 PEDLIKF 302


>gi|154482728|ref|ZP_02025176.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
 gi|149736323|gb|EDM52209.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILLLGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  + +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAQ-HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              +   I+T +ILFI  GAF                                      P
Sbjct: 229 PQQELIPIDTTNILFICGGAFDGLGKIIERRLDKGSIGFNSQIIEKTDKSEDELFKQVMP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L  L++     ILT+ ++ LI QYK+L + +G+ L FT+
Sbjct: 289 EDLTKFGLIPEFIGRVPVTVSLDFLDEKALERILTEPKNALIKQYKKLFELDGVELKFTD 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           ++I+ +A  AV   +     GAR L+ ++E  + DI +    D   K  +++ + + 
Sbjct: 349 EAINTIAKKAVERKT-----GARGLRAILENAVMDIMYETPSDETIKECIVNEDVIN 400



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 9/287 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ  AK+ +++A+ N ++R     DL  EL   NILL+GPTG GK
Sbjct: 64  LKPKEIKEFLDQYVIGQDAAKKVLSVAVYNHYKRVLAGKDLDVELQKSNILLLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++      DE
Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAQHGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++                 +      D +N   
Sbjct: 184 IDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIPIDTTNILF 243

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +     L ++  + +  G        ++K       DE  + +  + + +  +   
Sbjct: 244 ICGGAFD--GLGKIIERRLDKGSIGFNSQIIEKTDKS--EDELFKQVMPEDLTKFGLIPE 299

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
               +      D +  +     +   +  + +    L E   V  K+
Sbjct: 300 FIGRVPVTVSLDFLDEKALERILTEPKNALIKQYKKLFELDGVELKF 346


>gi|15612353|ref|NP_224006.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori J99]
 gi|8134369|sp|Q9ZJL8|CLPX_HELPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4155892|gb|AAD06862.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
           J99]
          Length = 452

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 59/345 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 115 NHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 174

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 175 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSEHR 232

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 233 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 292

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 293 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 352

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 353 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAI 407

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E    DI F    L+   V I  + V                IL
Sbjct: 408 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 451



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 88  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 147

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 207

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 208 NVQKAQKGIVFIDEIDKISRLSEHRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 267

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 268 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 323


>gi|331701126|ref|YP_004398085.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128469|gb|AEB73022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           buchneri NRRL B-30929]
          Length = 415

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 68/347 (19%)

Query: 134 ILDAL----VGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           ILD L    +G+     T  V      +       E D ++    S+I      G    G
Sbjct: 68  ILDKLNEFVIGQENAKRTLSVAVYNHYKRVNEMISEPDDDLELQKSNICII---GPTGSG 124

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L++  +K++          ++ +    +  D  + L+ +       ++  E +GI++
Sbjct: 125 KTYLAQTMAKILNVPFAIADATTLTEAG-YVGEDVENILLKLLQNADYDVERAE-HGIIY 182

Query: 249 LDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDH 295
           +DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I+T +
Sbjct: 183 IDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTN 242

Query: 296 ILFIASGAF----------------------------------HVSRPADL-----LPEI 316
           ILFI  GAF                                      P DL     +PE 
Sbjct: 243 ILFIVGGAFDGIEGIVKSRLGDKTIGFGTNSDEAAKVDAKNIMQSVIPEDLLKFGLIPEF 302

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+   L  L+  D   ILT+ ++ L+ QYK+L++ +G  L+F   +++ +A +A+ 
Sbjct: 303 IGRLPILTALDKLDDHDLVRILTEPKNALVKQYKKLIELDGAELEFAPGALEKMAQLAIA 362

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
                 D GAR L++++E V+ DI F      +   V+I  E V  H
Sbjct: 363 R-----DTGARGLRSIIEGVMRDIMFDLPSRNDVSKVIITPETVTDH 404



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 13/257 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTG 63
            +P +I+ +L+ ++IGQ++AKR +++A+ N ++R        D   EL   NI ++GPTG
Sbjct: 63  LTPAQILDKLNEFVIGQENAKRTLSVAVYNHYKRVNEMISEPDDDLELQKSNICIIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  +      
Sbjct: 123 SGKTYLAQTMAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAEHGIIY 182

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +          +      D +N
Sbjct: 183 IDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTN 242

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
                G   G  +  E   K     +      +  +      ++    +I  D +    I
Sbjct: 243 ILFIVG---GAFDGIEGIVKSRLGDKTIGFGTNSDEAAKVDAKNIMQSVIPEDLLKFGLI 299

Query: 239 --QMVENYGIVFLDEFD 253
              +     +  LD+ D
Sbjct: 300 PEFIGRLPILTALDKLD 316


>gi|299747228|ref|XP_001836896.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis
           cinerea okayama7#130]
 gi|298407424|gb|EAU84513.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis
           cinerea okayama7#130]
          Length = 508

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 160/481 (33%), Gaps = 131/481 (27%)

Query: 8   SPRE------IVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------Q 41
           +PRE      +V  L+++I+GQ+ AK+ +++A+ N + R                     
Sbjct: 61  TPREVKEYRLLVQYLNQFIVGQETAKKVLSVAVYNHYNRVRANLELAMSNEDRLRTDPEI 120

Query: 42  QLPADLRDELM----------------------------PKNILLVGPTGVG-------- 65
           +   D  D +                               N+L++GPTG G        
Sbjct: 121 EDAPDAHDGVSSATIRPIRNVAKTPPPLSLRPRQLPLFEKSNVLVIGPTGSGLMDESTLA 180

Query: 66  -KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
            KT +++ LAR+   PF   + T FT+ GYVG +VE  I+ L+  A      +    V  
Sbjct: 181 GKTLLAKTLARVLDVPFSASDATSFTQAGYVGEDVEMAIQRLLQAANWDPIRASMGIVYI 240

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
                   R        + +  +R+V  + ++   +  + ++  V    +  +    P G
Sbjct: 241 DEVDKIARR------TSSGSEGSRDVGGEGVQQALL--RMLEGSVVTVQAKGAVHAEPPG 292

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              GI    +   +V                                 +   ++  + + 
Sbjct: 293 KGEGIGRTGQRAPQVAPQPEVYH-------------------------IDTSNVLFILSG 327

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK---YGSINTDHILFIAS 301
             V L+    I  R +   IG +   +     P    +  S K      + T  ++    
Sbjct: 328 AFVGLEGI--IKQRVAKGSIGFTANILPDSATPFFTPNRKSGKDSLLEMVETQDLV---- 381

Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                      +PE  GR P    L  L   D R ILT+ + +L+ QY+ L    G+ + 
Sbjct: 382 -------KYGFIPEFIGRLPSITTLSPLTIPDLRRILTEVKGSLMSQYQALFGYSGVEIR 434

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  ++D +   A         +     + +M                + V+I  + V+ 
Sbjct: 435 FTSSALDEICRKAAERGGGARGL-----RGIM--------------AIRHVLITEDVVKG 475

Query: 422 H 422
            
Sbjct: 476 K 476


>gi|315586024|gb|ADU40405.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           35A]
 gi|317178339|dbj|BAJ56127.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F30]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|217034446|ref|ZP_03439859.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
 gi|216943116|gb|EEC22590.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10]
 gi|317176837|dbj|BAJ54626.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F16]
 gi|317181320|dbj|BAJ59104.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           F57]
          Length = 448

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|294629344|ref|ZP_06707904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. e14]
 gi|292832677|gb|EFF91026.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. e14]
          Length = 428

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGGQGREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIEGRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GATIRSKRELEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLKILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL  + + 
Sbjct: 333 ALVKQYQRLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLMSVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VV+ A+ V  ++       D
Sbjct: 388 VPSRKDVARVVVTADVVHSNVNPTLIPRD 416



 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   LD Y++GQ+ AK+++++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLDGYVVGQEAAKKSLSVAVYNHYKRVQAGENGGGQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFSGLEKIIEGRAGAKGIGFGATIRSKRELEAKDQFEDVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|270635177|ref|ZP_06222042.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270317475|gb|EFA28964.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 164

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 121/163 (74%), Gaps = 11/163 (6%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           LD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GPTGVGKT I+RRLA+
Sbjct: 1   LDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGKTEIARRLAK 60

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+    + R +A   AEERIL
Sbjct: 61  LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDAAEERIL 120

Query: 136 DALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDI 167
           DAL+                S+TR+ FRKKLR+G++ DKEI+I
Sbjct: 121 DALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEI 163


>gi|255528526|ref|ZP_05395308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
 gi|255507784|gb|EET84242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           carboxidivorans P7]
          Length = 429

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 131/304 (43%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 109 SNILLLGPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAG-YVGEDVENILLKLIQNSDY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 DIERAE-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  INT +ILFI  GAF                                      P
Sbjct: 227 PHQEFIQINTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMP 286

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L +L+K+    IL + ++ L+ QYK L + + + LDF E
Sbjct: 287 GDLLKFGLIPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEE 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++A+A+ AV       D GAR L+ ++E  ++DI F     +E   VVI+ + +    
Sbjct: 347 EALEAIANEAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTIETKK 401

Query: 424 GDFP 427
            +  
Sbjct: 402 PELI 405



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + +T    P EI + LD+Y+IGQ +AK+++A+A+ N ++R    A+  D EL   NILL+
Sbjct: 55  VDMTSLPKPIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLL 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + R
Sbjct: 115 GPTGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNSDYDIERAER 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           + +N   I GGA  G+  + E  ++V   G   +I+   +K   +L+++
Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQE 283


>gi|238926239|ref|ZP_04657999.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
 gi|238885919|gb|EEQ49557.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei
           ATCC 43531]
          Length = 421

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 111 SNVLMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS--VSTKYG--- 289
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G   
Sbjct: 170 DIEKAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 228

Query: 290 ------SINTDHILFIASGAF--------------------------------HVSR--P 309
                  I+T +ILFI  G+F                                 +S+  P
Sbjct: 229 PQQELLQIDTTNILFICGGSFDGLEEIIESRLGKKQMGFGAEVRSRRRVKIGASLSKIIP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L SL++     ILT+ ++ LI Q+++L++ +G+ L F +
Sbjct: 289 EDLMKNGLIPEFIGRLPVVVTLNSLDEDALVRILTEPKNALIKQFQKLLELDGVRLTFED 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           +++  +A  A+   +     GAR L++++E ++ ++ +    +   T   +  + +  H 
Sbjct: 349 EALHLIAKEALTHKT-----GARGLRSIVENIMRNVMYEVPSIHGVTACQVTKDVIINHS 403

Query: 424 GDFPS 428
               +
Sbjct: 404 DPILT 408



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVG 65
            P+EI   LD+Y+IGQ +AK+++++A+ N ++R       +   EL   N+L++GPTG G
Sbjct: 63  KPKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++                 +      D +N  
Sbjct: 183 EIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
            I GG+  G+  + E          G+  + + R+ +     +++ ++  +
Sbjct: 243 FICGGSFDGLEEIIESRLGKKQMGFGAEVRSRRRVKIGASLSKIIPEDLMK 293


>gi|329934562|ref|ZP_08284603.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329305384|gb|EGG49240.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 428

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFQDVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ V  ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408

Query: 424 GDFPSETD 431
                  D
Sbjct: 409 NPTLIPRD 416



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFQDVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|307638046|gb|ADN80496.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           908]
 gi|325996650|gb|ADZ52055.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2018]
 gi|325998239|gb|ADZ50447.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori
           2017]
          Length = 452

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 115 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 174

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 175 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 232

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 233 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 292

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 293 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 352

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 353 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-----GARGLRAI 407

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 408 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 442



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 88  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELS 147

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 207

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 208 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 267

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 268 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 323


>gi|261838902|gb|ACX98667.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52]
          Length = 448

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDSQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 21/241 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E      D S+       +   L                + +MS ++    L   ++  L
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDL 323

Query: 228 I 228
           +
Sbjct: 324 V 324


>gi|313673003|ref|YP_004051114.1| ATP-dependent clp protease ATP-binding subunit clpx
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939759|gb|ADR18951.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 414

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 67/362 (18%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
            E++ +     +E +   ++G+     T  V             + DIE+  +     N 
Sbjct: 55  KELKLKTPDKIKEVLDQYVIGQDDAKKTLSVAVYNHYKRIFYKSKDDIEIEKS-----NI 109

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            + G    G   L+   +K +          ++ +    +  D    ++ +       ++
Sbjct: 110 LLIGATGTGKTLLARTLAKTLNVPFAISDATTLTEAG-YVGEDVEHIILRLLQAADFDVE 168

Query: 240 MVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST----------- 286
             +  GIVFLDE DKI  +     I   VS EGVQ+ LL +VEG+  +            
Sbjct: 169 KAQ-RGIVFLDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPNQ 227

Query: 287 KYGSINTDHILFIASGAFH------------------------------------VSRPA 310
           ++  ++T +ILFI  GAF                                       +P 
Sbjct: 228 EFIQVDTTNILFICGGAFEGLTEIIKQRIGKKSLGFKSNEDRKSVNEMSKSDILKFVQPD 287

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL+     PE+ GR PV   L  L++     IL + +++++ QYKEL + + + L FT+ 
Sbjct: 288 DLIKYGLIPELVGRLPVVAVLDDLDEDALVKILVEPKNSIVKQYKELFRMDNVELTFTDG 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ ++   A+   +     GAR L+ ++E ++ DI F    +++    VI  E V     
Sbjct: 348 ALRSIVKKAIERKT-----GARGLRAIIEEIMTDIMFKIPSMKDVVECVITEETVMEKAD 402

Query: 425 DF 426
             
Sbjct: 403 PL 404



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 11/235 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I   LD+Y+IGQ DAK+ +++A+ N ++R    +    E+   NILL+G TG GKT
Sbjct: 61  TPDKIKEVLDQYVIGQDDAKKTLSVAVYNHYKRIFYKSKDDIEIEKSNILLIGATGTGKT 120

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            ++R LA+    PF   + T  TE GYVG +VE II  L+  A   V +++R     DE+
Sbjct: 121 LLARTLAKTLNVPFAISDATTLTEAGYVGEDVEHIILRLLQAADFDVEKAQRGIVFLDEI 180

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + +  +    I   + G+       ++    + +                 D +N   I
Sbjct: 181 DKISRKSENVSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPNQEFIQVDTTNILFI 240

Query: 182 PGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            GGA  G+  + +    K     +  + R SV +    + + +  + +  D + +
Sbjct: 241 CGGAFEGLTEIIKQRIGKKSLGFKSNEDRKSVNE----MSKSDILKFVQPDDLIK 291


>gi|297199669|ref|ZP_06917066.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sviceus ATCC 29083]
 gi|197713961|gb|EDY57995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sviceus ATCC 29083]
          Length = 428

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFEDVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ V  ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408

Query: 424 GDFPSETD 431
                  D
Sbjct: 409 NPTLIPRD 416



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQESAKKALSVAVYNHYKRVQAGENGGGSSRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|8134368|sp|Q9X5N1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus]
 gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 427

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 131/324 (40%), Gaps = 60/324 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                  E  + + D     SN  + G    G   L++  ++++           + +  
Sbjct: 94  HNHYKRIESKVAMEDVELQKSNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG 153

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 154 -YVGEDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQA 211

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL L+EG+  +            ++  ++T +ILFI  GAF                   
Sbjct: 212 LLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFG 271

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DL     +PE  GR P+   L+ L+++    IL   ++ 
Sbjct: 272 ADVQSKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPIITALEELDEAALINILNQPKNA 331

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY++L + +G+ L FT+ ++ A+A+ A+   +     GAR L++++E  + D+ +  
Sbjct: 332 LTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKA-----GARGLRSILESAMLDVMYEI 386

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFP 427
              +  + V+I  E +        
Sbjct: 387 PSRKTAREVLISEEVILKKSEPVV 410



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 8/228 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI + LD Y+IGQ+ AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 68  PSEIKAVLDEYVIGQERAKKTLSVAVHNHYKRIESKVAMEDVELQKSNILLLGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+
Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEI 187

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +          +      D +N    
Sbjct: 188 DKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFI 247

Query: 183 GGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G + G L+  +                    +     L   E + L+
Sbjct: 248 CGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPEDLL 295


>gi|255014830|ref|ZP_05286956.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp.
           2_1_7]
 gi|298375769|ref|ZP_06985725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_19]
 gi|298266806|gb|EFI08463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides
           sp. 3_1_19]
          Length = 410

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 133/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+     D EI+          SN  + G    G   L+   +K++        
Sbjct: 90  NHYKRLLQKVTADDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 140

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 141 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 196

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 197 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 256

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++   R
Sbjct: 257 RLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRDTLR 316

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L   +GI L F E   + + D A+        +GAR L++++E 
Sbjct: 317 NILTEPKNSIIKQYVKLFDMDGIKLTFDEKVYEFIVDKALEFK-----LGARGLRSIVEA 371

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S    + K + +  EY +     
Sbjct: 372 VMMDAMYSMPSQKVKELHVTLEYAKEKFEK 401



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +K      P +I + LD+Y+IGQ DAKR +++++ N ++R        D E+   NI++V
Sbjct: 55  LKQKDLPKPEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTADDVEIEKSNIIMV 114

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R
Sbjct: 115 GATGTGKTLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          E    + 
Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 235 DTKNILFVCGGAFDGIE 251


>gi|291559060|emb|CBL37860.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [butyrate-producing bacterium SSC/2]
          Length = 461

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 58/314 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +   + +   D SN  + G    G   L +  ++++          S+ +    +
Sbjct: 145 HYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTYLVKTLARLLKVPLAITDATSLTEAG-YI 203

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             D    L  +     + +   E +GIVF+DE DKI  + + N   VS E VQ+ LL L+
Sbjct: 204 GDDVESVLSKLLQAADNDVDRAE-HGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLL 262

Query: 280 EGSSVSTKYG-----------SINTDHILFIASGAF------------------------ 304
           EG+ V    G           +INT +ILFI  GAF                        
Sbjct: 263 EGAEVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLK 322

Query: 305 ---------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                             R    +PE  GR P+   L+ L K     IL + ++ ++ QY
Sbjct: 323 DRFDEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQY 382

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQ 408
           ++L++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D  
Sbjct: 383 QKLLELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDT 437

Query: 409 EKTVVIDAEYVRLH 422
             +V I  +Y+  H
Sbjct: 438 IGSVTITRDYIENH 451



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 117 PHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTY 176

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V      
Sbjct: 177 LVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV------ 230

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRD---GEISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D +  K  T N+R+V  + ++      +   E+++ V  TS +          
Sbjct: 231 FIDE--IDKIAKKQNT-NSRDVSGESVQQGLLKLLEGAEVEVPVGATSKNAMVPLTTINT 287

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMS 211
              +      F  + G  +K+ ++ +
Sbjct: 288 RNILFICGGAFPNLEGIIKKRLMKKT 313


>gi|282866709|ref|ZP_06275749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. ACTE]
 gi|282558408|gb|EFB63970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. ACTE]
          Length = 431

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 233 PHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMP 292

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 293 EDLVKFGMIPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFER 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 353 EALEAIADQAILRQT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 407

Query: 424 G 424
            
Sbjct: 408 N 408



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 6/117 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGP 61
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q         D   EL   NILL+GP
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGANRDDAIELAKSNILLLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 123 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 179


>gi|238917542|ref|YP_002931059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
 gi|238872902|gb|ACR72612.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
          Length = 468

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 58/297 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L +  ++++          ++ +     + D+ + ++    +  D
Sbjct: 170 SNMLMIGPTGSGKTYLVKTLARILQVPLAITDATTLTEA--GYIGDDIESVVSKLLLAAD 227

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------- 289
           +      +GI+F+DE DKI  +       VS E VQ+ +L L+EGS +    G       
Sbjct: 228 NDVEKAEHGIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSEIEVPVGATSKNAM 287

Query: 290 ----SINTDHILFIASGAF---------------------------------------HV 306
               ++NT  ILFI  GAF                                         
Sbjct: 288 VPQVTVNTKDILFICGGAFPDLEDIIKTRLNKSSSMGFNADLKDKYDDEKNIMSYVTVDD 347

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            R   ++PE  GR P+   L  L++     IL + ++ ++ QY++L++ + + L+FT+D+
Sbjct: 348 LREYGMIPEFLGRLPIIYSLDRLDEDMLVNILKEPKNAILKQYQKLLELDEVKLEFTDDA 407

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           + ++A  A+       D GAR L++++E  + DI +    D    +V I  + V   
Sbjct: 408 LRSIARKAME-----KDTGARALRSIIEDFMLDIMYEIPKDSNIGSVTITEDVVEKK 459



 Score =  146 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 9/285 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVGK 66
           P EI  +LD Y+IGQ  AK+ +++A+ N ++R    A +    E+   N+L++GPTG GK
Sbjct: 123 PHEIKRKLDEYVIGQDYAKKVMSVAVYNHYKRVSADARILGDVEIEKSNMLMIGPTGSGK 182

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T + + LAR+   P    + T  TE GY+G ++E ++  L+  A N V ++    +    
Sbjct: 183 TYLVKTLARILQVPLAITDATTLTEAGYIGDDIESVVSKLLLAADNDVEKAEHGII---- 238

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I+  ++I      ++   +   V +  L+  E S+ E+ +     ++ +    +     
Sbjct: 239 FIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSEIEVPVGATSKNAMVPQVTVNTKDI 298

Query: 187 VGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL--IDMDTVHRDSIQMVEN 243
           + I   +      ++ +   K   M       +   DE + +  + +D +    +     
Sbjct: 299 LFICGGAFPDLEDIIKTRLNKSSSMGFNADLKDKYDDEKNIMSYVTVDDLREYGMIPEFL 358

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             +  +   D++      N +   +  + +    L+E   V  ++
Sbjct: 359 GRLPIIYSLDRLDEDMLVNILKEPKNAILKQYQKLLELDEVKLEF 403


>gi|116512006|ref|YP_809222.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940173|sp|Q02Z22|CLPX_LACLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116107660|gb|ABJ72800.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 411

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 153/374 (40%), Gaps = 64/374 (17%)

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV-FRKKLRDGE 159
           ++   +++  +   ++S   EV+    +   + + + ++G+        V      +   
Sbjct: 38  ELSTRILEEELKEEQDSEMLEVKTPKEMF--DHLNEYVIGQEKAKRALAVAVYNHYKRIN 95

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            +  +I  ++    S   N  + G    G   L++  +K +          S+ +    +
Sbjct: 96  FTASKIAEDIELQKS---NILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAG-YV 151

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +      +I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 152 GEDVENILLKLLQASDFNIERAE-HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLK 210

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  S            +   I+T +ILFI  GAF                      
Sbjct: 211 IIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANN 270

Query: 305 ---------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                             +   L+PE  GR P+   L+ L + D   ILT+ ++ LI QY
Sbjct: 271 KKLSDEDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQY 330

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+L+  + + L+F + ++ A+A  A+   +     GAR L++++E V+ DI F     +E
Sbjct: 331 KQLLLFDNVELEFKDGALMAIAKKAIERKT-----GARGLRSIIEEVMMDIMFEVPSHEE 385

Query: 410 -KTVVIDAEYVRLH 422
              V+I    +   
Sbjct: 386 ITKVIITEAVIDGK 399



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 11/237 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILL 58
           ++    +P+E+   L+ Y+IGQ+ AKRA+A+A+ N ++R    A       EL   NILL
Sbjct: 55  EMLEVKTPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILL 114

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  +   +  + 
Sbjct: 115 IGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAE 174

Query: 119 -----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 DE+ + A  +    I   + G+       ++    +                  
Sbjct: 175 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234

Query: 174 SDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            D  N   I GGA  GI  +    L  K++G G   K          E++ ++  + 
Sbjct: 235 IDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKF 291


>gi|238917376|ref|YP_002930893.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
 gi|259491257|sp|C4Z1T5|CLPX_EUBE2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238872736|gb|ACR72446.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           eligens ATCC 27750]
          Length = 422

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 130/305 (42%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGSGKTFLAQNLARLLNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
            ++  + YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 174 DVEKAQ-YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 232

Query: 290 ------SINTDHILFIASGAF----------------------------------HVSRP 309
                  I+T +ILFI  GAF                                  H + P
Sbjct: 233 PQQELIPIDTTNILFICGGAFDGLEKIIESRMDKSSIGFNSELKEKSNDDVGEMFHKALP 292

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV V L SL++     IL + ++ +I QY+ L   + + L+FT+
Sbjct: 293 QDLIKFGLIPEFVGRVPVVVSLDSLDEEALVRILKEPKNAIIKQYQALFGLDEVALEFTD 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           ++++A+A  +    +     GAR L++++E V+ ++ +    D      +I  E V    
Sbjct: 353 EAVEAVAHKSFERKT-----GARGLRSILESVMNEVMYEIPSDETISKCIITKEAVEGSA 407

Query: 424 GDFPS 428
                
Sbjct: 408 KPLLE 412



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 12/255 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P++I   LD Y+IGQ +AK+ +A+A+ N ++R    +DL  EL   NIL++GPTG GK
Sbjct: 68  LKPKQIKEFLDDYVIGQDEAKKVLAVAVYNHYKRIMSQSDLDVELQKSNILMLGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V +++      DE
Sbjct: 128 TFLAQNLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDVEKAQYGIIYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +            +      D +N   
Sbjct: 188 IDKITKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIPIDTTNILF 247

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI-- 238
           I GGA  G+  + E        G   +++          + +   + +  D +    I  
Sbjct: 248 ICGGAFDGLEKIIESRMDKSSIGFNSELKEKSNDD----VGEMFHKALPQDLIKFGLIPE 303

Query: 239 QMVENYGIVFLDEFD 253
            +     +V LD  D
Sbjct: 304 FVGRVPVVVSLDSLD 318


>gi|239941126|ref|ZP_04693063.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           roseosporus NRRL 15998]
 gi|239987604|ref|ZP_04708268.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           roseosporus NRRL 11379]
 gi|291444567|ref|ZP_06583957.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|291347514|gb|EFE74418.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           roseosporus NRRL 15998]
          Length = 432

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRDNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180


>gi|325264757|ref|ZP_08131486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
 gi|324030049|gb|EGB91335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
          Length = 423

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGCGKTLLAQTLARILNVPFAIADATALTEAG-YVGEDVENILLKVIQAADG 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DIERAE-HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   I+T +ILFI  GAF                                  H   P
Sbjct: 229 PHQELIQIDTTNILFICGGAFEGIDKMIETRLDKKSIGFNAEIASKHEENVDVLLHQVLP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE+ GR PV V L  L+K     ILT+ +S ++ QY++L++ +G+ L+F +
Sbjct: 289 QDLVKYGLIPELVGRLPVTVSLDMLDKEALIRILTEPKSAIVKQYQKLLELDGVRLEFDK 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ A+A+ ++   +     GAR L+ +ME ++ D  F    D   K   I  E V+
Sbjct: 349 EALYAIAETSLARKT-----GARGLRAIMEDIMMDTMFKVPSDDTIKACRITKEAVK 400



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 8/254 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  ++  A   +  +       DE
Sbjct: 124 TLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKVIQAADGDIERAEHGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +                   D +N   
Sbjct: 184 IDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQIDTTNILF 243

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I GGA  GI  + E        G   +I    ++    L+     + +    +  + +  
Sbjct: 244 ICGGAFEGIDKMIETRLDKKSIGFNAEIASKHEENVDVLLHQVLPQDLVKYGLIPELVGR 303

Query: 241 VENYGIVFLDEFDK 254
           +     V LD  DK
Sbjct: 304 L--PVTVSLDMLDK 315


>gi|312143236|ref|YP_003994682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
 gi|311903887|gb|ADQ14328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium
           sp. 'sapolanicus']
          Length = 421

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 135/320 (42%), Gaps = 61/320 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++ V D     SN  + G    G   +++  ++++          S+ +    +  D  +
Sbjct: 100 NMVVDDVELQKSNIMMVGPTGCGKTLMAQTLARILDVPFAITDATSLTEAG-YVGEDVEN 158

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 159 ILLKLIQAADYDVEKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTV 217

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  I+T  ILFIA GAF                            
Sbjct: 218 ASVPPQGGRKHPHQEFIQIDTTDILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTKNES 277

Query: 306 --------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                     +P DL     +PE  GR PV+V L  L   D   I+ +  + L+ QY++ 
Sbjct: 278 KNIGEILKHIQPQDLLHYGLIPEFIGRMPVQVTLDELEVEDMVRIMQEPRNALVKQYQKF 337

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKT 411
              + I L+FT+D+++A+A+ A++ N+     GAR L++V+E  + DI +      + K 
Sbjct: 338 FLMDDIELEFTDDALEAIANQALSRNT-----GARGLRSVVENTVLDIMYDLPSRPEIKK 392

Query: 412 VVIDAEYVRLHIGDFPSETD 431
            +I  E +  +        D
Sbjct: 393 CIITKEVIENNADPILEIED 412



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 12/261 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           +KL+    P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NI++V
Sbjct: 57  LKLSEIPKPKEIKEILDQYVIGQERAKKSLSVAVYNHYKRVNTNMVVDDVELQKSNIMMV 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +
Sbjct: 117 GPTGCGKTLMAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAADYDVEKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 236

Query: 175 DISNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           D ++   I GGA  G+  L +  +  KVMG G   K +   +     L   +   L+   
Sbjct: 237 DTTDILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTKNESKNIGEILKHIQPQDLLHYG 296

Query: 232 TVHRDSIQMVENYGIVFLDEF 252
            +      +      V LDE 
Sbjct: 297 LIPE---FIGRMPVQVTLDEL 314


>gi|213022612|ref|ZP_03337059.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 266

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 60/232 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYG 289
             GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++ 
Sbjct: 20  QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 79

Query: 290 SINTDHILFIASGAF------------------------------------HVSRPADLL 313
            ++T  ILFI  GAF                                        P DL+
Sbjct: 80  QVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLI 139

Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
                PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++
Sbjct: 140 KFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALN 199

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 200 AIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 246


>gi|53719040|ref|YP_108026.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei K96243]
 gi|52209454|emb|CAH35405.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           pseudomallei K96243]
          Length = 430

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 103 NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 157

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 158 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKSDNPSITR 209

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 210 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 269

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 270 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 329

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY++L   E + L+   D++ A+A  A+   +     GAR L++++E
Sbjct: 330 MKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKT-----GARGLRSIIE 384

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    L+    V+ID   +           D
Sbjct: 385 QALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIYED 422



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 75  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 134

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 135 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 194

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 195 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 254

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 255 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 303


>gi|323140767|ref|ZP_08075686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414785|gb|EFY05585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Phascolarctobacterium sp. YIT 12067]
          Length = 416

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 130/303 (42%), Gaps = 64/303 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  +K++          ++ +        E+   +LI      
Sbjct: 117 SNILMLGPTGSGKTLLAQTLAKILQVPFAIADATTLTEAGYVGEDVENILLKLISNADYD 176

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
            ++ Q     GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S       
Sbjct: 177 IEAAQR----GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPKGGR 232

Query: 287 -----KYGSINTDHILFIASGAF---------HVSR------------------------ 308
                ++ +I+T +ILFI  GAF          V +                        
Sbjct: 233 KHPHQEFINIDTTNILFICGGAFAGLEHIINARVGKKNLGFGADIRRKEEVDNEAVFAKV 292

Query: 309 -PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
            P D+     +PE  GR PV V L  L+++    ILT+  + L+ QY+  ++ +G+ L+F
Sbjct: 293 LPEDIMKFGIIPEFAGRMPVVVTLNPLDEAALVQILTEPRNALVKQYQRFLEMDGVELEF 352

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRL 421
              ++ A+A+ A+  N+     GAR L++++E  + ++ +      + T  ++    +R 
Sbjct: 353 EPGALTAIAEEALKRNA-----GARGLRSIIESTMRNVMYDVPSRDDVTKCIVTEATIRQ 407

Query: 422 HIG 424
           H  
Sbjct: 408 HCE 410



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 13/218 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRD-ELMPKNILLVGPT 62
            P+EI + LD Y+IGQ +AK+ +++A+ N ++R     Q P   RD EL   NIL++GPT
Sbjct: 66  KPQEIKAILDEYVIGQDEAKKTLSVAVYNHYKRINYEIQNPESKRDLELQKSNILMLGPT 125

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R   
Sbjct: 126 GSGKTLLAQTLAKILQVPFAIADATTLTEAGYVGEDVENILLKLISNADYDIEAAQRGII 185

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++    +                 + D +
Sbjct: 186 YIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPKGGRKHPHQEFINIDTT 245

Query: 178 NF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSV 212
           N   I GGA  G+ ++    +  K +G G   + +  V
Sbjct: 246 NILFICGGAFAGLEHIINARVGKKNLGFGADIRRKEEV 283


>gi|297194376|ref|ZP_06911774.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720966|gb|EDY64874.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 429

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDL 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 354 PALEAIADQAILRGT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITRDVVRNNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I + +       G+  + K  +     + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|320010822|gb|ADW05672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           flavogriseus ATCC 33331]
          Length = 432

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGSNRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180


>gi|224418551|ref|ZP_03656557.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           canadensis MIT 98-5491]
 gi|253826897|ref|ZP_04869782.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313142079|ref|ZP_07804272.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|253510303|gb|EES88962.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|313131110|gb|EFR48727.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter
           canadensis MIT 98-5491]
          Length = 412

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 143/375 (38%), Gaps = 65/375 (17%)

Query: 106 LVDVAINIVRESRRDEVREQASINAE-ERILD--ALVGKTATSNTREVFRKKLRDGEISD 162
           L     +        E+  +     E + ILD   +  + A            +    + 
Sbjct: 39  LFGTEKHFEEAEATQEMDLKIIPPKELKAILDDYVIGQEKAKKVFSVAVYNHYKRILQNP 98

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           KE + E++ +     N  + G    G   +++  +K +          S+ +    +  D
Sbjct: 99  KEDETEISKS-----NILLIGPTGSGKTLMAQTLAKALNIPIAICDATSLTEAG-YVGED 152

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + L  +       +   +  GI+F+DE DKI        I   VS EGVQ+ LL ++E
Sbjct: 153 VENILTRLLQEANGDVTKAQK-GIIFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIE 211

Query: 281 GSSVSTK-----------YGSINTDHILFIASGAFH------------------------ 305
           GS V+             +  INT  ILFI  GAF                         
Sbjct: 212 GSVVNIPPKGGRKHPNQDFIQINTKDILFICGGAFDGLNEIIERRIGGNVLGFHHTKNAK 271

Query: 306 --------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P DL     +PE+ GR  +   L  + K     IL   ++ L  QY++L
Sbjct: 272 TESKNLLDEVEPDDLVSFGLIPELIGRLHMIATLDEITKEAMITILQKPKNALTKQYQKL 331

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
            + + +IL F  ++++A+A++A+   +     GAR L+++ME ++ DI +   +L+   V
Sbjct: 332 FELDDVILTFKPEALEAIAELAIQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEV 386

Query: 413 VIDAEYVRLHIGDFP 427
           +I  E V        
Sbjct: 387 IITQESVTKKEKPIL 401



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 15/255 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R  Q P +   E+   NILL+GPTG GKT
Sbjct: 62  PKELKAILDDYVIGQEKAKKVFSVAVYNHYKRILQNPKEDETEISKSNILLIGPTGSGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V ++++     DE+
Sbjct: 122 LMAQTLAKALNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGDVTKAQKGIIFIDEI 181

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + + ++    I   + G+       ++    + +                 +  +   I
Sbjct: 182 DKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQINTKDILFI 241

Query: 182 PGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            GGA  G+  + E  +   V+G    K  +    +    L   E D L+    +      
Sbjct: 242 CGGAFDGLNEIIERRIGGNVLGFHHTKNAKT---ESKNLLDEVEPDDLVSFGLIPE---L 295

Query: 240 MVENYGIVFLDEFDK 254
           +   + I  LDE  K
Sbjct: 296 IGRLHMIATLDEITK 310


>gi|325290595|ref|YP_004266776.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965996|gb|ADY56775.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 417

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 60/308 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L+   +K++          S+ +    +  D  + L
Sbjct: 101 KIDDVELQKSNIVMLGPTGSGKTLLASTLAKILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQASDFDIEKAE-RGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVAS 218

Query: 286 T-----------KYGSINTDHILFIASGAF--------------------HVSRPAD--- 311
                       ++  ++T +ILFI  GAF                     + + ++   
Sbjct: 219 VPPQGGRKHPHQEFIQLDTTNILFIVGGAFDGIEKIIQNRTGKKTMGFGAEIQKKSEKNV 278

Query: 312 ----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE  GR PV V L++L++     ILT+ ++ L+ QY++L++ 
Sbjct: 279 GELLRQIMPGDLLKYGLIPEFVGRIPVVVTLEALDQDALVRILTEPKNALVKQYEKLLEM 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           +G+ L+FTED++ A+A+ A+  N+     GAR L+ ++E  + ++ +      + T  V+
Sbjct: 339 DGVQLEFTEDALKAIAEEAIRRNT-----GARGLRAIVEETMLNVMYDIPTRTDVTKCVV 393

Query: 415 DAEYVRLH 422
           + E +   
Sbjct: 394 NKESIVKK 401



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI + LD+Y+IGQ+ AK+ +++A+ N ++R    + + D EL   NI+++GPTG GK
Sbjct: 63  KPVEIKAILDQYVIGQEQAKKVLSVAVYNHYKRISQSSKIDDVELQKSNIVMLGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++  LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++ R     DE
Sbjct: 123 TLLASTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQASDFDIEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSDI 176
           V + A  +    I   + G+       ++    +     + G     +  I++  T+   
Sbjct: 183 VDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQLDTTNILF 242

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                  G    I N +   +   G+  +KK   +V +   ++M  +  +
Sbjct: 243 IVGGAFDGIEKIIQNRTGKKTMGFGAEIQKKSEKNVGELLRQIMPGDLLK 292


>gi|148990170|ref|ZP_01821401.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924437|gb|EDK75526.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 289

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 129/359 (35%), Gaps = 81/359 (22%)

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + R  +
Sbjct: 1   GSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGII 60

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +    I+  VA            
Sbjct: 61  YV-------DEIDKIAKKSENVSITRDVSGEGVQQALLKI--IEGTVASVPPQ------- 104

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
                      +   + M     K I   V   +  +      RL          I   +
Sbjct: 105 --------GGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRL------GEKVIGFGQ 150

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302
           N     +DE       +S     +  E +Q+                             
Sbjct: 151 NNKA--IDE-------NSSYMQEIIAEDIQK----------------------------- 172

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F
Sbjct: 173 -------FGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEF 225

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
            ++++  +A+ A+   +     GAR L++++E  + D+ F     +   +V I  E V 
Sbjct: 226 DDEALQEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD 279


>gi|291530697|emb|CBK96282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium
           siraeum 70/3]
          Length = 430

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 73/349 (20%)

Query: 132 ERILDA-LVGKTATSNT-----REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           + ILD  ++G+     T        ++K     E +  EI+++        SN  + G  
Sbjct: 67  KEILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQK-------SNVLLLGPT 119

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG   +++  + V+          ++ +    +  D  + L+ +       I+  E +G
Sbjct: 120 GVGKTMIAQTLANVLKVPFAIADATTLTQAG-YVGEDVENVLLRLIQAADYDIEAAE-HG 177

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           I+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  IN
Sbjct: 178 IIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQIN 237

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T +ILFI  GAF                                  H   P DL     +
Sbjct: 238 TKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFGII 297

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+  +D++ A+A  
Sbjct: 298 PELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEINDDAMRAIAKK 357

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           A    +     GAR L+TV+E  L DI F A  D     V++  E V  
Sbjct: 358 AAERKT-----GARGLRTVVEEALSDIMFDAPSDDTISKVILTGECVTD 401



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
            P E+   LD+YIIGQ +AK+ + +++ N +++     +      EL   N+LL+GPTGV
Sbjct: 62  KPTELKEILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQKSNVLLLGPTGV 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A   +  +       
Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAADYDIEAAEHGIIYI 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ +    +    I   + G+       ++    + +                 +  N 
Sbjct: 182 DEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQINTKNI 241

Query: 180 DIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               G +   ++   +    S  +G G + K +    K    L + E + L+
Sbjct: 242 LFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQD-NKINEALHQVEPEDLV 292


>gi|225568848|ref|ZP_03777873.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
 gi|225162347|gb|EEG74966.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM
           15053]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 120 SNILMLGPTGCGKTLLAQTLAKILNVPFAIADATALTEAG-YVGEDVENILLKIIQAADG 178

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E YGI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +         
Sbjct: 179 DVERAE-YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKH 237

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   I+T +ILFI  GAF                                  +   P
Sbjct: 238 PHQELIQIDTTNILFICGGAFEGIEKIVENRIDKKAIGFNADITEKHENDVDRLLNQVLP 297

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE+ GR PV V L+ L+K     ILT+  S L  QY++L++ +G+ L F E
Sbjct: 298 QDLVKYGIIPELVGRVPVTVALQMLDKEALMRILTEPRSALAKQYQKLLELDGVDLIFDE 357

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           D+++ +A+ ++   +     GAR L+ +ME V+ DI + A  D   KT  I  E V+
Sbjct: 358 DALEEIAETSLKRKT-----GARGLRAIMENVMMDIMYRAPSDETLKTCRITKEVVK 409



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI   LD Y+IGQ +AK+ +++A+ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 73  LKPEEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRIMAQKDLGVELNKSNILMLGPTGCGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   V  +       DE
Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDVERAEYGIIYIDE 192

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    + +                 D +N   
Sbjct: 193 IDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQIDTTNILF 252

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           I GGA  GI  + E         R  K  +       E   ++ DRL++ 
Sbjct: 253 ICGGAFEGIEKIVE--------NRIDKKAIGFNADITEKHENDVDRLLNQ 294


>gi|319758057|gb|ADV69999.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           JS14]
          Length = 408

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 147/379 (38%), Gaps = 67/379 (17%)

Query: 107 VDVAINIVRESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEI 160
           V++A  I+RE   +EV  + A     + +L+ L         A            +    
Sbjct: 38  VELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF 97

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D   + +V    S+I      G    G   L++  +K +          ++ +    + 
Sbjct: 98  QDSRDENDVDLQKSNILMI---GPTGSGKTFLAQTLAKSLNVPFAIADATALTEAG-YVG 153

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +      +I   E  GI+++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 154 EDVENILLKLLQAADFNIDRAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKI 212

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF-------------------HVSR 308
           +EG+  S            +   ++T +ILFI  GAF                   H +R
Sbjct: 213 IEGTVASVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNR 272

Query: 309 PAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             D                  ++PE+ GR PV   L  L   D   ILT+ ++ L+ QY+
Sbjct: 273 AIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQ 332

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
             +  + + LDF ED++ A+A+ A+   +     GAR L++++E  + D+ F        
Sbjct: 333 TFLSYDDVELDFDEDALLAIAEKAIERKT-----GARGLRSIIEETMLDVMFEVPGQDNV 387

Query: 410 KTVVIDAEYVRLHIGDFPS 428
           K V +    V         
Sbjct: 388 KRVRVTKAAVDGKEKPLLE 406



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L     P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL+
Sbjct: 57  LADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQ-DSRDENDVDLQKSNILM 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 116 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAE 175

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A       I   + G+       ++    +                  
Sbjct: 176 RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIH 235

Query: 174 SDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-ID 229
            D  N   I GGA  GI  +    L  K++G G   +     +     ++ D+  +  I 
Sbjct: 236 VDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGII 295

Query: 230 MDTVHR 235
            + + R
Sbjct: 296 PELIGR 301


>gi|71892028|ref|YP_277758.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796134|gb|AAZ40885.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 419

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 129/330 (39%), Gaps = 79/330 (23%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR+ +       I    T    SN  + G    G   L+E  ++ +          
Sbjct: 96  HYKRLRNEKTC-----INSNGTKLFKSNILLIGPTGSGKTLLAETLARFLNVPFSISDAT 150

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
           ++ +              D++ V +  +Q           GI+++DE DKI  +     I
Sbjct: 151 TLTEA--------GYVGEDVENVVQKLLQRCNYDVNKAQQGIIYIDEIDKISRKSENPSI 202

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL L+EG++ +            ++  ++T +ILFI  GAF       
Sbjct: 203 TRDVSGEGVQQALLKLIEGTTAAVPPQGGRKHPQQEFIQVDTTNILFICGGAFFGLNQII 262

Query: 305 -----------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLN 330
                                            P DL+     PE  GR P+   L  L 
Sbjct: 263 QQRTTNKRTIGFRVLENNDTTKNIEHSLLTQIEPEDLIKFGLIPEFVGRLPIVSTLDELK 322

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           + +   IL + ++ LI QY+ L   +G+ L+F+E S+ A+A  A+        IGAR L+
Sbjct: 323 EKELIKILKEPKNALIKQYEMLFHIDGVKLEFSETSLTAIAKNAMKKK-----IGARGLR 377

Query: 391 TVMERVLEDISFSASDL-QEKTVVIDAEYV 419
            ++E +L D+ +          ++ID   V
Sbjct: 378 AILENILLDVMYELPSKNNIDKIIIDESVV 407



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 11/261 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           KLT   +P EI + LD Y+IGQ+  K+ +A+A+ N ++R +           +L   NIL
Sbjct: 61  KLTKYPTPCEIKNYLDDYVIGQEYTKKVLAVAVYNHYKRLRNEKTCINSNGTKLFKSNIL 120

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT ++  LAR    PF   + T  TE GYVG +VE +++ L+      V ++
Sbjct: 121 LIGPTGSGKTLLAETLARFLNVPFSISDATTLTEAGYVGEDVENVVQKLLQRCNYDVNKA 180

Query: 118 R-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
           +      DE+ + +  +    I   + G+       ++                 +    
Sbjct: 181 QQGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTTAAVPPQGGRKHPQQEFI 240

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             D +N     G +     L+++  +   + R    R+       + +       I+ + 
Sbjct: 241 QVDTTNILFICGGAF--FGLNQIIQQRTTNKRTIGFRVLENNDTTKNIEHSLLTQIEPED 298

Query: 233 VHRDSIQMVENYGIVFLDEFD 253
           + +  +       +  +   D
Sbjct: 299 LIKFGLIPEFVGRLPIVSTLD 319


>gi|257063883|ref|YP_003143555.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia
           heliotrinireducens DSM 20476]
 gi|256791536|gb|ACV22206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia
           heliotrinireducens DSM 20476]
          Length = 444

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 65/312 (20%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
            +E D+E+A +     N  + G    G   L++  ++ +          ++ +    +  
Sbjct: 126 HEEDDVELAKS-----NVLLLGPTGSGKTLLAQTLARALQVPFAIADATTLTEAG-YVGE 179

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLV 279
           D  + L+ + T     I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL +V
Sbjct: 180 DVENILLKLITAADFDIERAQI-GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIV 238

Query: 280 EGSS--VSTKYG---------SINTDHILFIASGAF---------HVSR----------- 308
           EG+   V  + G          I+T +ILFI  GAF          V +           
Sbjct: 239 EGTEAAVPPQGGRKHPQQELIHIDTTNILFILGGAFVGLADIVGQRVGKTGIGFTSELPE 298

Query: 309 --------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                         P DL     +PE  GR PV   L  L + D   ILT+ ++ L+ QY
Sbjct: 299 SKKHEEAELLRKVLPEDLNKFGMIPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQY 358

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K +   E   L FT++++ A+A  AV+  +     GAR L+++ ERVL+DI F   + + 
Sbjct: 359 KRMFAFEDSELVFTDEALRAIAHEAVDHGT-----GARGLRSICERVLQDIMFDLPEQEG 413

Query: 410 -KTVVIDAEYVR 420
             TVVI+A  + 
Sbjct: 414 ASTVVINASDIE 425



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 13/232 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGVG 65
           P EI   L  +++GQ  AKRA+A+A+ N ++R    Q   +   EL   N+LL+GPTG G
Sbjct: 88  PHEIFDLLSEHVVGQDAAKRALAVAVYNHYKRISLGQSHEEDDVELAKSNVLLLGPTGSG 147

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  ++      D
Sbjct: 148 KTLLAQTLARALQVPFAIADATTLTEAGYVGEDVENILLKLITAADFDIERAQIGIVYID 207

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A       I   + G+       ++                 +      D +N  
Sbjct: 208 EIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEAAVPPQGGRKHPQQELIHIDTTNIL 267

Query: 180 DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            I GGA VG+ ++             S   +  +    +   +++ ++ ++ 
Sbjct: 268 FILGGAFVGLADIVGQRVGKTGIGFTSELPESKKHEEAELLRKVLPEDLNKF 319


>gi|182438718|ref|YP_001826437.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779367|ref|ZP_08238632.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           cf. griseus XylebKG-1]
 gi|238688994|sp|B1VXA8|CLPX_STRGG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|178467234|dbj|BAG21754.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659700|gb|EGE44546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces
           cf. griseus XylebKG-1]
          Length = 432

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI  + VR ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++ 
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 180


>gi|33519712|ref|NP_878544.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
 gi|46576472|sp|Q7VRH0|CLPX_BLOFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33504057|emb|CAD83318.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Blochmannia floridanus]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 73/304 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +              D++ V + 
Sbjct: 123 SNILLIGPTGSGKTLLAQTLARFLDIPFSISDATTLTEA--------GYVGEDVENVIQK 174

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV---- 284
            +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+      
Sbjct: 175 LLQRCDYNIDRAQSGIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTVAFIPP 234

Query: 285 -------STKYGSINTDHILFIASGAF--------------------------------- 304
                    ++  ++T +ILFI  G+F                                 
Sbjct: 235 KGGRKHPQQEFIQVDTTNILFICGGSFSGLNKIVEERISDNHAIGFHASLKDNNRENLKY 294

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
              +   P DL+     PE  GRFPV   L  L +S+   IL + ++ LI QY++L  T+
Sbjct: 295 SLLNKVEPEDLIKFGLIPEFVGRFPVISILNELKESELVAILKEPKNALIKQYQKLFYTD 354

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415
            + L+F E ++ A+A  A+   S+    GAR L+T++E +L D+ +   +  + T VVI+
Sbjct: 355 KVKLEFAESALSAIAKCAMATKSS----GARGLRTILENILLDMMYDLPNQNKVTKVVIN 410

Query: 416 AEYV 419
           ++ V
Sbjct: 411 SDVV 414



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 14/198 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---------LRDELMPKNILL 58
           +P +I   L  Y++GQ+  K+ +A+A+ N ++R +                EL   NILL
Sbjct: 68  TPHDINQYLSTYVVGQEYVKKTLAVAVYNHYKRLRYQVMNINNNSNLYQDVELSKSNILL 127

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR    PF   + T  TE GYVG +VE +I+ L+      +  ++
Sbjct: 128 IGPTGSGKTLLAQTLARFLDIPFSISDATTLTEAGYVGEDVENVIQKLLQRCDYNIDRAQ 187

Query: 119 -----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 DE+ + A  +    I   + G+       ++    +            +     
Sbjct: 188 SGIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTVAFIPPKGGRKHPQQEFIQ 247

Query: 174 SDISNFDIPGGASVGILN 191
            D +N     G S   LN
Sbjct: 248 VDTTNILFICGGSFSGLN 265


>gi|311746205|ref|ZP_07719990.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus
           sp. PR1]
 gi|126576433|gb|EAZ80711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus
           sp. PR1]
          Length = 408

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 63/300 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  +K++           + +        ES   RL+     +
Sbjct: 106 SNIIMVGDTGTGKTYLAKTLAKILEVPFCIADATVLTEAGYVGEDVESILTRLLQSADYN 165

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
            ++ +     GIV++DE DKI  +     I   VS EGVQ+ +L L+EG+ V+       
Sbjct: 166 VEAAER----GIVYIDELDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTVVNVPPQGGR 221

Query: 287 -----KYGSINTDHILFIASGAF-----HVSRP--------------------------- 309
                K  ++NTD+ILFI  GAF     H+ +                            
Sbjct: 222 KHPDQKMIAVNTDNILFICGGAFDGIARHIGKRLNTQPMGFGKAKDNAVADRENLLQYVT 281

Query: 310 ------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE+ GR P+  HL  L++   + ILT+ ++ L+ QY +L+K EG+ + F 
Sbjct: 282 SQDLKAFGLIPELIGRLPILTHLDPLHRDSLKRILTEPKNALVKQYDKLLKMEGVDIVFE 341

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           ED+ID + D AV  N     +GAR L+++ E ++ D  +    D   K +VIDA+Y +  
Sbjct: 342 EDAIDFIVDKAVEFN-----LGARGLRSICEAIITDAMYEIPSDDSIKELVIDAKYAQSK 396



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 7/227 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGK 66
            P+E+ S LD+++IGQ++AK+ + +A+ N ++R     D  D  +   NI++VG TG GK
Sbjct: 59  KPKELTSFLDQFVIGQEEAKKVLTVAVYNHYKRLSQKTDKDDVKIEKSNIIMVGDTGTGK 118

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     DE
Sbjct: 119 TYLAKTLAKILEVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAERGIVYIDE 178

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    + +          +    + +  N   
Sbjct: 179 LDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTVVNVPPQGGRKHPDQKMIAVNTDNILF 238

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           I GGA  GI             G  K    +V      L    S  L
Sbjct: 239 ICGGAFDGIARHIGKRLNTQPMGFGKAKDNAVADRENLLQYVTSQDL 285


>gi|300114125|ref|YP_003760700.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           watsonii C-113]
 gi|299540062|gb|ADJ28379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           watsonii C-113]
          Length = 424

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 83/387 (21%)

Query: 107 VDVAINIVRESRRDEVR--EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           V++  +I+RE  +D +   + + +     I D L          +   KK+    + +  
Sbjct: 43  VELCNDIIREEMQDRLSSGKSSHLPTPHEIRDIL----NQYVIGQSHAKKVLSVAVYNHY 98

Query: 165 IDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             +++   + D+    SN  + G    G   L+E  ++++          ++ +      
Sbjct: 99  KRLQLGKKNDDVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEA----- 153

Query: 221 RDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                   D++ + +  +Q  +        GIV++DE DKI  +     I   VS EGVQ
Sbjct: 154 ---GYVGEDVENIIQKLLQKCDYDVEKAQTGIVYVDEIDKISRKSDNPSITRDVSGEGVQ 210

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------------- 304
           + LL L+EG+  S            ++  +NT +ILFI  GAF                 
Sbjct: 211 QALLKLIEGTIASVPPQGGRKHPQQEFLQVNTANILFICGGAFAGLEKIIRDRSKKGGIG 270

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                 P DL+     PE  GR PV   L  L+++    IL + 
Sbjct: 271 FSAEVKSVEDKRSMGEVLQAVEPEDLIKYGLIPEFVGRMPVVATLDELDEAALIRILREP 330

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L  Q+  L + E   ++F ED++ A+A  A+ L +     GAR L++++E VL D  
Sbjct: 331 KNALTKQFARLFEMENCKVEFREDALRAVATKAMELKT-----GARGLRSILENVLLDTM 385

Query: 402 FSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +    +     VVID   V+       
Sbjct: 386 YDLPSMDHVSKVVIDESVVKREAEPLL 412



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 12/261 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           K +   +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+G
Sbjct: 62  KSSHLPTPHEIRDILNQYVIGQSHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++  
Sbjct: 122 PTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTG 181

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + +  +    I   + G+       ++    +            +      +
Sbjct: 182 IVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQVN 241

Query: 176 ISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDT 232
            +N   I GGA  G+  +    SK  G G   +++     +     L   E + LI    
Sbjct: 242 TANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYGL 301

Query: 233 VHRDSIQMVENYGIVFLDEFD 253
           +      +     +  LDE D
Sbjct: 302 IPE---FVGRMPVVATLDELD 319


>gi|157962501|ref|YP_001502535.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
 gi|189044152|sp|A8H613|CLPX_SHEPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157847501|gb|ABV88000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++V+          ++ +              D++ + 
Sbjct: 112 GKSNILLIGPTGSGKTLLAETLARVLDVPFTMADATTLTEA--------GYVGEDVENII 163

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 164 QKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 223

Query: 287 -----------KYGSINTDHILFIASGAF-----------HVS----------------- 307
                      ++  ++T  ILF+  GAF           HV                  
Sbjct: 224 PPQGGRKHPQQEFLQVDTSKILFVCGGAFAGLEKVIEQRAHVGTGIGFGAQVKGEADKKT 283

Query: 308 --------RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL     +PE  GR PV   L  L+      IL++ ++ +  Q+  L +
Sbjct: 284 ISDTLLEVEPEDLVKFGLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFE 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            E + L+F +D++ A+A  A    +     GAR L++++E +L DI +      +   VV
Sbjct: 344 MENVELEFRDDALKAIALKAQTRKT-----GARGLRSIVEGILLDIMYDLPSTDDVAKVV 398

Query: 414 IDAEYVR 420
           ID   V+
Sbjct: 399 IDESVVK 405



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ  AK+ +A+A+ N ++R +  +     EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNASPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR+   PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG 228


>gi|167562415|ref|ZP_02355331.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis EO147]
 gi|167569598|ref|ZP_02362472.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           oklahomensis C6786]
          Length = 423

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY++L   E + L+   D++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    L+    V+ID   +           D
Sbjct: 378 QALLDVMYELPTLKGVGKVIIDDNVIEGDGKPLLIYED 415



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 296


>gi|77165152|ref|YP_343677.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|254433871|ref|ZP_05047379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           oceani AFC27]
 gi|123757859|sp|Q3JAJ9|CLPX_NITOC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|76883466|gb|ABA58147.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus
           oceani ATCC 19707]
 gi|207090204|gb|EDZ67475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus
           oceani AFC27]
          Length = 424

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 152/380 (40%), Gaps = 83/380 (21%)

Query: 107 VDVAINIVRESRRDEVR--EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           V++  +I+RE  +D +   + + +     I D L          +   KK+    + +  
Sbjct: 43  VELCNDIIREEMQDRLSSGKSSHLPTPHEIRDIL----NQYVIGQNHAKKVLSVAVYNHY 98

Query: 165 IDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             +++   + D+    SN  + G    G   L+E  ++++          ++ +      
Sbjct: 99  KRLQLGKKNDDVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEA----- 153

Query: 221 RDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                   D++ + +  +Q  +        GIV++DE DKI  +     I   VS EGVQ
Sbjct: 154 ---GYVGEDVENIIQKLLQKCDYDVEKAQTGIVYVDEIDKISRKSDNPSITRDVSGEGVQ 210

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------------- 304
           + LL L+EG+  S            ++  +NT +ILFI  GAF                 
Sbjct: 211 QALLKLIEGTIASVPPQGGRKHPQQEFLQVNTANILFICGGAFAGLEKIIRDRSKKGGIG 270

Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                 P DL+     PE  GR PV   L  L+++    IL + 
Sbjct: 271 FSAEVKSVEDKRSMGEVLQAVEPEDLIKYGLIPEFVGRMPVVATLDELDEAALIRILREP 330

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L  Q+  L + E   ++F ED++ A+A  A+ L +     GAR L++++E VL D  
Sbjct: 331 KNALTKQFARLFEMENCKVEFREDALRAVATKAMELKT-----GARGLRSILENVLLDTM 385

Query: 402 FSASDLQ-EKTVVIDAEYVR 420
           +    +     VVID   V+
Sbjct: 386 YDLPSMDHVSKVVIDESVVK 405



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 12/261 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           K +   +P EI   L++Y+IGQ  AK+ +++A+ N ++R QL     D EL   NILL+G
Sbjct: 62  KSSHLPTPHEIRDILNQYVIGQNHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIG 121

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           PTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++  
Sbjct: 122 PTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTG 181

Query: 119 ---RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + +  +    I   + G+       ++    +            +      +
Sbjct: 182 IVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQVN 241

Query: 176 ISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDT 232
            +N   I GGA  G+  +    SK  G G   +++     +     L   E + LI    
Sbjct: 242 TANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYGL 301

Query: 233 VHRDSIQMVENYGIVFLDEFD 253
           +      +     +  LDE D
Sbjct: 302 IPE---FVGRMPVVATLDELD 319


>gi|303231335|ref|ZP_07318069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513931|gb|EFL55939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 417

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+  +     N    G    G   L++  +K++          S+
Sbjct: 90  NHYKRLQTDNVVDDVELQKS-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I+  E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKLIQAADYDIERAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDGMDKVITKRTAKKT 262

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 263 LGFGADVQRAEERDVSAILKEVVPEDLLKFGLIPEFIGRLPVMVTLDLLDRDALVQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L F +D+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 323 PKNALTKQYEKILSLDGVELTFEDDALEEIADEALQRKT-----GARGLRAIIEKVMKYV 377

Query: 401 SFSASDLQEK-TVVIDAEYVRLHIGDFPSET 430
            +    + +    ++  E V+          
Sbjct: 378 MYEVPSMDDVAKCIVTREAVKGTGEPILKNE 408



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           KL    +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +G
Sbjct: 56  KLKELPTPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNVVDDVELQKSNVLFIG 115

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R 
Sbjct: 116 PTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAERG 175

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    +                   D
Sbjct: 176 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQID 235

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   ++
Sbjct: 236 TTNILFICGGAFDGMD 251


>gi|297160514|gb|ADI10226.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           bingchenggensis BCW-1]
          Length = 428

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQASDY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 233 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 292

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ L F  
Sbjct: 293 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELHFDR 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ ++E VL    +     ++   VVI  + V  ++
Sbjct: 353 PALEAIADQAILRGT-----GARGLRAIIEEVLMSAMYEVPSRKDVARVVITEDVVHSNV 407

Query: 424 G 424
            
Sbjct: 408 N 408



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 32/244 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q         D   EL   NILL+GP
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENSAHNRDDGIELAKSNILLLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES---- 117
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  +   V+++    
Sbjct: 123 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQASDYDVKKAETGI 182

Query: 118 ----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                 D+V  ++              ++ +L  L G TA+           + G     
Sbjct: 183 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHPH 234

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +  I++  T+          G    I + +       G+  + K  +     + E+M ++
Sbjct: 235 QEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPED 294

Query: 224 SDRL 227
             + 
Sbjct: 295 LVKF 298


>gi|310820095|ref|YP_003952453.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393167|gb|ADO70626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 131/324 (40%), Gaps = 60/324 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                  E  +++ D     SN  + G    G   L++  ++++           + +  
Sbjct: 94  HNHYKRIESKVQMDDVELQKSNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG 153

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 154 -YVGEDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQA 211

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            ++  ++T +ILFI  GAF                   
Sbjct: 212 LLKIIEGTIANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLEQVIERRLGGRSLGFG 271

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DL     +PE  GR P+   L+ L++     IL+  ++ 
Sbjct: 272 ADIQSKKQRNLTELLKHVEPEDLLKFGMIPEFIGRLPIITALEELDEPALVNILSQPKNA 331

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY++L + +G+ L FT+ ++ A++  A+   +     GAR L++++E  + D+ +  
Sbjct: 332 LTKQYRKLFELDGVTLKFTDGALKAISTEAIRRKA-----GARGLRSILESAMLDVMYEL 386

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFP 427
              +  + V+I  E +        
Sbjct: 387 PSRKTAREVLISEEVILKKSEPVV 410



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y++GQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 68  PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+
Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEI 187

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +          +      D +N    
Sbjct: 188 DKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQVDTTNILFI 247

Query: 183 GGASVGILN 191
            G + G L 
Sbjct: 248 CGGAFGGLE 256


>gi|39996890|ref|NP_952841.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
 gi|61211572|sp|Q74C83|CLPX_GEOSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39983778|gb|AAR35168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           sulfurreducens PCA]
          Length = 417

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 147/368 (39%), Gaps = 67/368 (18%)

Query: 115 RESRRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            E+   +V++       + +LD   +    A            +  E   K  D+E+  +
Sbjct: 53  EEAMGPDVKKLPKPREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDVEMQKS 112

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                N  + G    G   L++  ++++          ++ +    +  D  + ++++  
Sbjct: 113 -----NILLLGPTGSGKTLLAQTLARILKVPFAMADATNLTEAG-YVGEDVENIILNLLQ 166

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
                ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S     
Sbjct: 167 AADYDVERAQK-GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKG 225

Query: 287 -------KYGSINTDHILFIASGAFH---------------------------------- 305
                  ++  ++T +ILFI  GAF                                   
Sbjct: 226 GRKHPQQEFLKVDTTNILFICGGAFAGLDSIIQQRIGVKKLGFGADVKSKVEKRAGELLT 285

Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P DL     +PE  GR PV   L+ L+++    IL + ++ LI QY++L + E + L
Sbjct: 286 EVTPEDLLKFGFIPEFIGRLPVLATLRELDETAMVQILKEPKNALIKQYQKLFEMEHVKL 345

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
            FT+ S+ A++  A+   +     GAR L++++E  + DI +        K VVI+ + +
Sbjct: 346 KFTDGSLVAISREALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVINEDVI 400

Query: 420 RLHIGDFP 427
                   
Sbjct: 401 YNKEKPII 408



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 65  KPREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK-CYPELMRDESDRLI 228
           I GGA  G+ ++ +    V   G    ++  V+K     L     + L+
Sbjct: 245 ICGGAFAGLDSIIQQRIGVKKLGFGADVKSKVEKRAGELLTEVTPEDLL 293


>gi|15827775|ref|NP_302038.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           leprae TN]
 gi|221230252|ref|YP_002503668.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           leprae Br4923]
 gi|21263482|sp|Q9CBY6|CLPX_MYCLE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763857|sp|B8ZRP1|CLPX_MYCLB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13093327|emb|CAC30427.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           leprae]
 gi|219933359|emb|CAR71571.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
           leprae Br4923]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 63/326 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++ GE         V    S   N  + G    G   L++  +K++          
Sbjct: 92  HYKRIQAGEKGRDSKREPVELAKS---NILMLGPTGCGKTYLAQTLAKMLNVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GIIYIDEVDKIARKSENPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GAF          + +
Sbjct: 207 EGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLDKIIYERIGK 266

Query: 309 -------------------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE  GR PV   + +L+      IL
Sbjct: 267 RGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGLIPEFIGRLPVIASVINLDMESLVKIL 326

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           ++ ++ L+ QY  L + +G+ L+FT D+++A+AD A++  +     GAR L+ +ME VL 
Sbjct: 327 SEPKNALVKQYTWLFEMDGVELEFTNDALEAVADQAIHRGT-----GARGLRAIMEEVLL 381

Query: 399 DISFSASDLQEK-TVVIDAEYVRLHI 423
            + +      +   VV+  E V+ ++
Sbjct: 382 PVMYDIPSRDDVAKVVVTKETVQDNV 407



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           ++L     P EI   L+ Y+IGQ  AKR +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VQLDELPKPVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSKREPVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|317498553|ref|ZP_07956847.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894246|gb|EFV16434.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 461

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 58/314 (18%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +   + +   D SN  + G    G   L +  ++++          S+ +    +
Sbjct: 145 HYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTYLVKTLARLLKVPLAITDATSLTEAG-YI 203

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
             D    L  +     + +   E +GIVF+DE DKI  + + N   VS E VQ+ LL L+
Sbjct: 204 GDDVESVLSKLLQAADNDVDRAE-HGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLL 262

Query: 280 EGSSVSTKYG-----------SINTDHILFIASGAF------------------------ 304
           EG+ V    G           +INT +ILFI  GAF                        
Sbjct: 263 EGAEVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLK 322

Query: 305 ---------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                             R    +PE  GR P+   L+ L K     IL + ++ ++ QY
Sbjct: 323 DRFDEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQY 382

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQ 408
           ++L++ + + L+F E +++A+A+ A+   +     GAR L+ ++E+ + DI +    D  
Sbjct: 383 QKLLELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDT 437

Query: 409 EKTVVIDAEYVRLH 422
             +V I  +Y+  H
Sbjct: 438 IGSVTITRDYIENH 451



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 12/206 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y+IGQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 117 PHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKTY 176

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +    V      
Sbjct: 177 LVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV------ 230

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRD---GEISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D +  K  T N+R+V  + ++      +   E+++ V  TS +          
Sbjct: 231 FIDE--IDKIAKKQNT-NSRDVSGESVQQGLLKLLEGAEVEVPVGATSKNAMVPLTTINT 287

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMS 211
              +      F  + G  +K+ ++ +
Sbjct: 288 RNILFICGGAFPNLEGIIKKRLMKKT 313


>gi|169628673|ref|YP_001702322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium
           abscessus ATCC 19977]
 gi|238688926|sp|B1MMV6|CLPX_MYCA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169240640|emb|CAM61668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium
           abscessus]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DVKRAET-GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPAD------------ 311
              ++  I+T ++LFI +GAF                     V   AD            
Sbjct: 233 PHQEFIQIDTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVKSKADIDTTDHFAEVMP 292

Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR P+   + +L++     IL++ ++ L+ QY  L + +G+ L+F++
Sbjct: 293 EDLIKFGLIPEFIGRLPIVASVTNLDRESLIKILSEPKNALVKQYTRLFEMDGVELEFSQ 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           D+++A+AD A++  +     GAR L+ +ME VL+ + +      +   VV+  E V  ++
Sbjct: 353 DALEAIADQAIHRGT-----GARGLRAIMEEVLQPVMYDIPSRDDVAKVVVTGETVIDNV 407



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 11/139 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPK 54
           +KL     P EI   L+ Y+IGQ  AK+ +A+A+ N ++R Q     RD      EL   
Sbjct: 56  VKLDELPKPAEIRDFLENYVIGQDTAKKTLAVAVYNHYKRIQAGDKARDARGETVELAKS 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NIL++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V
Sbjct: 116 NILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDV 175

Query: 115 RESR-----RDEVREQASI 128
           + +       DEV + A  
Sbjct: 176 KRAETGIIYIDEVDKIARK 194


>gi|213586931|ref|ZP_03368757.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 131

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/131 (47%), Positives = 95/131 (72%)

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           ++P+DL+PE+QGR P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  
Sbjct: 1   AKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSG 60

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           I  +A+ A  +N T  +IGARRL TV+ER++E+IS++ASDL  + + IDAEYV  H+   
Sbjct: 61  IKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDAL 120

Query: 427 PSETDMYHFIL 437
            ++ D+  FIL
Sbjct: 121 VADEDLSRFIL 131


>gi|303229430|ref|ZP_07316220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515966|gb|EFL57918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 417

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+  +     N    G    G   L++  +K++          S+
Sbjct: 90  NHYKRLQTDNMVDDVELQKS-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I+  E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKLIQAADYDIERAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDGMDKVITKRTAKKT 262

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 263 LGFGADVQRAEERDVSAILKEVVPEDLLKFGLIPEFIGRLPVMVTLDLLDRDALVQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L F +D+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 323 PKNALTKQYEKILSLDGVELTFEDDALEEIADEALQRKT-----GARGLRAIIEKVMKYV 377

Query: 401 SFSASDLQEK-TVVIDAEYVRLHIGDFPSET 430
            +    + +    ++  E V+          
Sbjct: 378 MYEVPSMDDVAKCIVTREAVKGTGEPILKNE 408



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60
           KL    +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +G
Sbjct: 56  KLKELPTPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNMVDDVELQKSNVLFIG 115

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  + R 
Sbjct: 116 PTGSGKTLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAERG 175

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    +                   D
Sbjct: 176 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQID 235

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   ++
Sbjct: 236 TTNILFICGGAFDGMD 251


>gi|302551408|ref|ZP_07303750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469026|gb|EFL32119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           viridochromogenes DSM 40736]
          Length = 428

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 132/301 (43%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 175 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 234 PHQEFIQIDTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGAQIRSKREMESKDQFQEVMP 293

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 294 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFER 353

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
           ++++A+AD A+   +     GAR L+ +ME VL+ + +     ++   VVI A+ V+ ++
Sbjct: 354 EALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVVQSNV 408

Query: 424 G 424
            
Sbjct: 409 N 409



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          D   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  M  +  + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGAQIRSKREMESKDQFQEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|210135559|ref|YP_002301998.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori P12]
 gi|210133527|gb|ACJ08518.1| ATP-dependent clp protease ClpX [Helicobacter pylori P12]
          Length = 448

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 111 NHYKRLSFKEKLKKQDDQDSDLELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 170

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 171 PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 228

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 229 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 288

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 289 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 348

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 349 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-----GARGLRAI 403

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 404 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 438



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDDQDSDLELEHLEEVELS 143

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 144 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 203

Query: 113 IVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            V+++++  V     ++ S  +E R I   + G+       ++    L +          
Sbjct: 204 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHP 263

Query: 168 E---VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           E   +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 264 EGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 319


>gi|119945202|ref|YP_942882.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii
           37]
 gi|229484080|sp|A1SUW8|CLPX_PSYIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|119863806|gb|ABM03283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Psychromonas
           ingrahamii 37]
          Length = 425

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 74/312 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 113 SNILLIGPTGSGKTLLAETMARLLDVPFAMADATTLTEA--------GYVGEDVENIIQK 164

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV---- 284
            +Q  +       +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+      
Sbjct: 165 LLQKCDYDAEKAQHGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPP 224

Query: 285 -------STKYGSINTDHILFIASGAF--------------------------------- 304
                  + ++  ++T  ILFI  GAF                                 
Sbjct: 225 QGGRKHPNQEFIQVDTSKILFICGGAFSGLDSVIEQRVDTGTGIGFGATVRDKDSKATIS 284

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL+     PE  GR PV   L  L++     ILT  ++ +  QY  L   E
Sbjct: 285 ETFQKVLPQDLIKYGLIPEFIGRLPVVATLTELDEHALVEILTAPKNAITKQYAALFGLE 344

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
            + L+F E+++ A+A  A+   +     GAR L++++E VL D  +    ++    VVID
Sbjct: 345 NVELEFRENALIAMAQKAMGRKT-----GARGLRSIVEEVLLDTMYDLPSVKNVSKVVID 399

Query: 416 AEYVRLHIGDFP 427
              +        
Sbjct: 400 ENVIAGKAKPLL 411



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 9/238 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ  AK+ +++A+ N ++R +  A     EL   NILL+GPTG GK
Sbjct: 66  TPHEIRDNLDDYVIGQDTAKKVLSVAVYNHYKRLKHGAISDGVELSKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+        +++      DE
Sbjct: 126 TLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDAEKAQHGIIYIDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++    +                   D S    
Sbjct: 186 IDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFIQVDTSKILF 245

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQK-CYPELMRDESDRLIDMDTVHRDSI 238
             G +   L+   +  + + +G       +V+       + +   +++  D +    I
Sbjct: 246 ICGGAFSGLD--SVIEQRVDTGTGIGFGATVRDKDSKATISETFQKVLPQDLIKYGLI 301


>gi|83721081|ref|YP_442644.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|167581578|ref|ZP_02374452.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis TXDOH]
 gi|167619694|ref|ZP_02388325.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis Bt4]
 gi|257138855|ref|ZP_05587117.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
 gi|123536902|sp|Q2SWQ5|CLPX_BURTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|83654906|gb|ABC38969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           thailandensis E264]
          Length = 423

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY++L   E + L+   D++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    L+    V+ID   +           D
Sbjct: 378 QALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 296


>gi|258646881|ref|ZP_05734350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           invisus DSM 15470]
 gi|260404320|gb|EEW97867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister
           invisus DSM 15470]
          Length = 412

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 122/296 (41%), Gaps = 60/296 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 111 SNIIMLGPTGSGKTLLAQTLARFLNVPFAISDATTLTEAG-YVGEDVENILLRLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 170 DLERAQ-RGIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   ++T +ILFI  GAF                                      P
Sbjct: 229 PNQEMIQLDTSNILFICGGAFAGIDKVIARRTTRSTMGFGADIKKADEKDIAEVLQNVEP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR PV V L  L +     IL++ ++ LI QY++L+  + + L F  
Sbjct: 289 EDLLKFGLIPEFIGRLPVIVALHPLKEEALIRILSEPKNALIRQYQKLLGMDNVELVFEG 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            ++ A+A  A+  N+     GAR L+ ++E+++  + +    +++     +  + V
Sbjct: 349 KAVRAIAKKAIERNT-----GARGLRAIIEKIMTKVMYEIPGMKDVVRCTVTEDTV 399



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P +I   +D+Y+I Q DAK A+A+A+ N ++R +   D    EL   NI+++GPTG GK
Sbjct: 64  TPEKIKEYMDQYVIEQDDAKVALAVAVYNHYKRIRYEKDDDGVELQKSNIIMLGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  ++R     DE
Sbjct: 124 TLLAQTLARFLNVPFAISDATTLTEAGYVGEDVENILLRLIQAADYDLERAQRGIVYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D SN   
Sbjct: 184 IDKIAKKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMIQLDTSNILF 243

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   ++  ++   ++          +   +     L   E + L+
Sbjct: 244 ICGGAFAGIDKVIARRTTRSTMGFGADIKKADEKDIAEVLQNVEPEDLL 292


>gi|119485224|ref|ZP_01619609.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106]
 gi|119457452|gb|EAW38577.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106]
          Length = 445

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  +K++          ++ +    +  D  + L+ +  V   
Sbjct: 135 SNILLIGPTGSGKTLLAETLAKMLDVPFAVADATTLTEAG-YVGEDVENILLRLLQVADF 193

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  +  GIV++DE DK+  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 194 DVEEAQ-RGIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKH 252

Query: 288 ----YGSINTDHILFIASGAF-----------------------------------HVSR 308
                  I+T +ILF+  GAF                                       
Sbjct: 253 PYQDCIQIDTSNILFVCGGAFVGLDRIIDQRTGKKSMGFIQGEKEQVKDQQSPETLKKME 312

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE+ GR P+   L  L++     ILT+  S L+ QY++L++ + + L+F 
Sbjct: 313 PDDLVKFGLIPELIGRIPMVAVLDPLDEKTLMAILTEPRSALVKQYQKLLRMDNVQLEFE 372

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ED+I A+A  A    +     GAR L+ ++E ++ D+ +     ++ K   +  E V   
Sbjct: 373 EDAIQAIAQEAFRRKT-----GARALRGIVEELMLDVMYELPSRKDVKRCQVTKEMVEKR 427



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 15/241 (6%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-------QLPADLRDELMPKN 55
           L     P EI + LD ++IGQ +AK+ +++A+ N ++R        +  ++   EL   N
Sbjct: 77  LNQVPKPIEIKAHLDNHVIGQDEAKKVLSVAVYNHYKRLGFIQGKSRQSSEDNIELQKSN 136

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT ++  LA++   PF   + T  TE GYVG +VE I+  L+ VA   V 
Sbjct: 137 ILLIGPTGSGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVE 196

Query: 116 ESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
           E++R     DE+ + A  +    I   + G+       ++    + +             
Sbjct: 197 EAQRGIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQD 256

Query: 171 DTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               D SN     G +   L+         K MG  + +K ++  Q+    L + E D L
Sbjct: 257 CIQIDTSNILFVCGGAFVGLDRIIDQRTGKKSMGFIQGEKEQVKDQQSPETLKKMEPDDL 316

Query: 228 I 228
           +
Sbjct: 317 V 317


>gi|40889781|pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
          Length = 376

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 58/335 (17%)

Query: 144 TSNTREVFRKKLRDGEISD-KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
               R  F++KL+  +  D       + +     SN  + G    G   +++  +K +  
Sbjct: 39  NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
                   S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI       
Sbjct: 99  PIAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENR 156

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF     
Sbjct: 157 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAE 216

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H+ +  DL     +PE+ GR PV   L S++  
Sbjct: 217 IIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 276

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ +
Sbjct: 277 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT-----GARGLRAI 331

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           +E    DI F    L+   V I  + V        
Sbjct: 332 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 366



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 21/247 (8%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50
           L++  +P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +            
Sbjct: 6   LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 65

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L
Sbjct: 66  EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 125

Query: 107 VDVAINIVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEIS 161
           +  +   V+++++  V     ++ S  +E R I   + G+       ++    L +    
Sbjct: 126 LQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 185

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
                 E      D S+       +   L                + +MS ++    L  
Sbjct: 186 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245

Query: 222 DESDRLI 228
            ++  L+
Sbjct: 246 VQTHDLV 252


>gi|126700923|ref|YP_001089820.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile 630]
 gi|254976903|ref|ZP_05273375.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-66c26]
 gi|255094289|ref|ZP_05323767.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CIP 107932]
 gi|255102471|ref|ZP_05331448.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-63q42]
 gi|255308376|ref|ZP_05352547.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile ATCC 43255]
 gi|255316043|ref|ZP_05357626.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-76w55]
 gi|255518700|ref|ZP_05386376.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-97b34]
 gi|255651822|ref|ZP_05398724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-37x79]
 gi|255657262|ref|ZP_05402671.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-23m63]
 gi|260684848|ref|YP_003216133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile CD196]
 gi|260688506|ref|YP_003219640.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile R20291]
 gi|296451897|ref|ZP_06893614.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296879708|ref|ZP_06903683.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
 gi|306521609|ref|ZP_07407956.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-32g58]
 gi|123066426|sp|Q180E8|CLPX_CLOD6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115252360|emb|CAJ70201.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           difficile]
 gi|260211011|emb|CBA66322.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile CD196]
 gi|260214523|emb|CBE07037.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile R20291]
 gi|296259279|gb|EFH06157.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP08]
 gi|296429297|gb|EFH15169.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium
           difficile NAP07]
          Length = 416

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 143/344 (41%), Gaps = 67/344 (19%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            + ++     K A S       K++   + S K+I+I+        SN  + G    G  
Sbjct: 71  NDYVIGQEKAKKALSVAVYNHYKRIYSKKSSSKDIEIQK-------SNILLLGPTGSGKT 123

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L++  ++ +          S+ +    +  D  + L+ +       I+  E  GI+++D
Sbjct: 124 LLAQTLARTLNVPFAMADATSLTEAG-YVGEDVENILLKLIQAADFDIEKAE-RGIIYID 181

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  I+T ++L
Sbjct: 182 EIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKIDTTNVL 241

Query: 298 FIASGA----------------------------------FHVSRPADL-----LPEIQG 318
           FI  GA                                  +    P DL     +PE  G
Sbjct: 242 FILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELDLGKLYEKVLPEDLLKYGIIPEFIG 301

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   L+ L++     IL + ++ L+ QYK+L++ + + L+F E ++ A+A  A+  N
Sbjct: 302 RIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAKKAIERN 361

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVRL 421
           +     GAR L++++E V+ +  F        K V++  + V  
Sbjct: 362 T-----GARGLRSIVESVMMETMFEVPSRDNIKKVIVTEKSVNE 400



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 8/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
            P+E++  L+ Y+IGQ+ AK+A+++A+ N ++R   +  +    E+   NILL+GPTG G
Sbjct: 62  KPKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKKSSSKDIEIQKSNILLLGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   + ++ R     D
Sbjct: 122 KTLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDIEKAERGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-F 179
           E+ + A  +    I   + G+       ++    + +                 D +N  
Sbjct: 182 EIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKIDTTNVL 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
            I GGA  G+  + +        G   KI    +    +L  
Sbjct: 242 FILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELDLGKLYE 283


>gi|239931289|ref|ZP_04688242.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439662|ref|ZP_06579052.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342557|gb|EFE69513.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 428

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGAQGREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GATIRSKRELESKDQFEEVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLKILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL+ + + 
Sbjct: 333 ALVKQYQRLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ V  ++       D
Sbjct: 388 VPSRKDVARVVITADVVLSNVNPTLIPRD 416



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  +  +  + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKRELESKDQFEEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|258652075|ref|YP_003201231.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nakamurella
           multipartita DSM 44233]
 gi|258555300|gb|ACV78242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nakamurella
           multipartita DSM 44233]
          Length = 422

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 171 DVKRAET-GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI +GAF                                      P
Sbjct: 230 PHQEFIQIDTTNVLFIVAGAFAGLEKIVGERVGRRGLGFGAEVRSKFDIDGSDVFSDVMP 289

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE  GR PV   + +L+K     ILT+    L  QY+ L + +G+ L+F  
Sbjct: 290 EDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILTEPRDALSKQYQRLFEMDGVALEFEP 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D+++A+AD A+   +     GAR L+ +ME VL    +      + + VV+ AE VR ++
Sbjct: 350 DALEAIADEAILRGT-----GARGLRAIMEEVLLPAMYEVPGRDDVERVVVSAETVRSNV 404



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 8/136 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNIL 57
           +KL     P  I   LD+Y+IGQ  AK+A+++A+ N ++R Q   D      EL   NIL
Sbjct: 56  VKLDELPKPTAIREYLDQYVIGQDTAKKALSVAVYNHYKRIQAGPDRGPEPVELAKSNIL 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+ +
Sbjct: 116 MLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRA 175

Query: 118 R-----RDEVREQASI 128
                  DEV + A  
Sbjct: 176 ETGIVYIDEVDKIARK 191


>gi|229918353|ref|YP_002886999.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium
           sp. AT1b]
 gi|259491259|sp|C4L4J1|CLPX_EXISA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229469782|gb|ACQ71554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Exiguobacterium sp. AT1b]
          Length = 422

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 59/295 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V+          S+ +    +  D  + L+ +      
Sbjct: 110 SNIVMIGPTGSGKTLLAQTMARVLNVPFAIADATSLTEAG-YVGEDVENILLKLIQSADY 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 169 DVEKAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAF----HVSR-----------------------------PA 310
              ++  I+T +ILFI  GAF     V +                             P 
Sbjct: 228 PHQEFIQIDTTNILFIVGGAFAGIESVVKRRIGKKVIGFGNDQENRELTQEDLLARALPE 287

Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL     +PE  GR PV   L +L++     ILT  ++ L+ QY+++++ + + L FT++
Sbjct: 288 DLQKFGLIPEFIGRLPVMATLTTLDEEALVEILTKPKNALVRQYEKMLELDDVELTFTDE 347

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           ++  +A +A+   +     GAR L++++E ++ D+ F+     + + V+I  E +
Sbjct: 348 ALIEIAKLAIKRKT-----GARGLRSIIEEMMLDVMFTVPSRDDIEKVIITDETI 397



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 9/241 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI + LD Y+IGQ  AKRA+++A+ N ++R        D EL   NI+++GPTG GK
Sbjct: 63  KPQEIRNILDDYVIGQDRAKRALSVAVYNHYKRINAGGRSDDVELAKSNIVMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +  +    
Sbjct: 123 TLLAQTMARVLNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E     +                
Sbjct: 180 ----IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT-TASVPPQGGRKHPHQEFIQ 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           +   N+  +             R   +K        E+  L   D + R   + ++ +G+
Sbjct: 235 IDTTNILFIVGGAFAGIESVVKRRIGKKVIGFGNDQENRELTQEDLLARALPEDLQKFGL 294

Query: 247 V 247
           +
Sbjct: 295 I 295


>gi|126441050|ref|YP_001059355.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126452859|ref|YP_001066626.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 1106a]
 gi|134277221|ref|ZP_01763936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|162210030|ref|YP_333873.2| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710b]
 gi|167719123|ref|ZP_02402359.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei DM98]
 gi|167738117|ref|ZP_02410891.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 14]
 gi|167815309|ref|ZP_02446989.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 91]
 gi|167823711|ref|ZP_02455182.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 9]
 gi|167836266|ref|ZP_02463149.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           thailandensis MSMB43]
 gi|167845262|ref|ZP_02470770.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei B7210]
 gi|167893806|ref|ZP_02481208.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 7894]
 gi|167902258|ref|ZP_02489463.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910497|ref|ZP_02497588.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei 112]
 gi|167918526|ref|ZP_02505617.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           pseudomallei BCC215]
 gi|217421598|ref|ZP_03453102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|226197310|ref|ZP_03792887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812683|ref|YP_002897134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242316368|ref|ZP_04815384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254179428|ref|ZP_04886027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|254189183|ref|ZP_04895694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197477|ref|ZP_04903899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|254260834|ref|ZP_04951888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
 gi|254297313|ref|ZP_04964766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|61211439|sp|Q63V40|CLPX_BURPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214765|sp|A3NWA5|CLPX_BURP0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214766|sp|A3NAI4|CLPX_BURP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126220543|gb|ABN84049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 668]
 gi|126226501|gb|ABN90041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106a]
 gi|134250871|gb|EBA50950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 305]
 gi|157806801|gb|EDO83971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 406e]
 gi|157936862|gb|EDO92532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169654218|gb|EDS86911.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei S13]
 gi|184209968|gb|EDU07011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1655]
 gi|217395340|gb|EEC35358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 576]
 gi|225930689|gb|EEH26699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506116|gb|ACQ98434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei MSHR346]
 gi|242139607|gb|EES26009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1106b]
 gi|254219523|gb|EET08907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           pseudomallei 1710a]
          Length = 423

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY++L   E + L+   D++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    L+    V+ID   +           D
Sbjct: 378 QALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 296


>gi|302560652|ref|ZP_07312994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
 gi|302478270|gb|EFL41363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           griseoflavus Tu4000]
          Length = 428

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGAQGREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GATIRSKREMESKDQFEEVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL+ + + 
Sbjct: 333 ALVKQYQRLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ V  ++       D
Sbjct: 388 VPSRKDVARVVITADVVLSNVNPTLIPRD 416



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  M  +  + E+M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKREMESKDQFEEVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|193213134|ref|YP_001999087.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobaculum
           parvum NCIB 8327]
 gi|238692649|sp|B3QPN4|CLPX_CHLP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193086611|gb|ACF11887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobaculum
           parvum NCIB 8327]
          Length = 439

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 68/335 (20%)

Query: 151 FRKKLRDGEIS-DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             K++   E + + E++IE        SN  + G    G   L++  + ++         
Sbjct: 112 HYKRIDAHEWTAEDEVEIEK-------SNILLIGPTGTGKTLLAQTLANLLEVPFTIADA 164

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVS 267
            S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS
Sbjct: 165 TSLTEAG-YVGDDVETILARLLHASDFNLERAE-RGIIYVDEIDKIARKSANVSITRDVS 222

Query: 268 REGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVS 307
            EGVQ+ LL ++EGS V    K G         +INT +ILFI  GAF          VS
Sbjct: 223 GEGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDKIIARRVS 282

Query: 308 RPA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           + +                               L+PE  GR PV   L  L+ S  R I
Sbjct: 283 KSSMGFGSKVKDKQTGYDPEILKLVTQDDLHEYGLIPEFIGRLPVMSALDPLDASALRNI 342

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ L+ QYK L + +G+ L+FT++++D + ++A+   +     GAR L++V+E V+
Sbjct: 343 LVEPKNALVKQYKRLFEMDGVELEFTDEALDKVVEIAIERGT-----GARALRSVLENVM 397

Query: 398 EDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
            DI F    L++ +  +I +E +    G    + D
Sbjct: 398 IDIMFELPTLKDVQKCIITSETIDKISGPVYEKKD 432



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 18/304 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTGV 64
           SP  I   LD+Y+IGQ+ AK+++++A+ N ++R    +  A+   E+   NILL+GPTG 
Sbjct: 83  SPVNIKESLDQYVIGQERAKKSLSVAVYNHYKRIDAHEWTAEDEVEIEKSNILLIGPTGT 142

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   +  + R     
Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAERGIIYV 202

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +A   I   + G+       ++    +            E    + +  N 
Sbjct: 203 DEIDKIARKSANVSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTKNI 262

Query: 180 DIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               G +   L+      +    MG G K K + +           E  +L+  D +H  
Sbjct: 263 LFICGGAFEGLDKIIARRVSKSSMGFGSKVKDKQTGYDP-------EILKLVTQDDLHEY 315

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            +       +  +   D + A    N +   +  + +    L E   V  ++     D +
Sbjct: 316 GLIPEFIGRLPVMSALDPLDASALRNILVEPKNALVKQYKRLFEMDGVELEFTDEALDKV 375

Query: 297 LFIA 300
           + IA
Sbjct: 376 VEIA 379


>gi|291533786|emb|CBL06899.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas
           hypermegale ART12/1]
          Length = 407

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 61/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          S+ +    +  D  + L+ +     +
Sbjct: 112 SNILMLGPTGSGKTLLAQTLAKILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADN 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 171 DIEQAQK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKH 229

Query: 290 -------SINTDHILFIASGAFHVSR---------------------------------- 308
                   I+T +ILFI  GAF                                      
Sbjct: 230 PHQEGMLQIDTTNILFICGGAFDGIEKIIDARLGKKSLGFGADIKSKRKQTTGEILKNVL 289

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
           P DL     +PE  GR PV V L+SL +     IL   ++ L+ QY +L++ +G+ L F 
Sbjct: 290 PEDLLKCGLIPEFIGRVPVVVTLESLTEDALVDILVKPKNALVKQYGKLLEMDGVKLHFD 349

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           E+++  +A  A+   +     GAR L++++ER++ D+ F         +  I  E +   
Sbjct: 350 EEALHLIAKEALERKT-----GARGLRSIIERIMRDVMFEIPSKMGAVSCEITKEIIEKK 404



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 8/193 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           ++L     PREI   L++Y+IGQ +AK+++++A+ N ++R        D EL   NIL++
Sbjct: 58  VELRELPKPREIYDVLNQYVIGQDEAKKSLSVAVYNHYKRINRVTKQDDVELQKSNILML 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A N + ++++
Sbjct: 118 GPTGSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADNDIEQAQK 177

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             +         + I          S TR+V  + ++   +   E  I          + 
Sbjct: 178 GIIY-------IDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHP 230

Query: 180 DIPGGASVGILNL 192
              G   +   N+
Sbjct: 231 HQEGMLQIDTTNI 243


>gi|167750808|ref|ZP_02422935.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702]
 gi|167656243|gb|EDS00373.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702]
          Length = 395

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 73/349 (20%)

Query: 132 ERILDA-LVGKTATSNT-----REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           ++ILD  ++G+     T        ++K     E +  EI+++        SN  + G  
Sbjct: 32  KKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQK-------SNVLLLGPT 84

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            VG   +++  + V+          ++ +    +  D  + L+ +       I+  E +G
Sbjct: 85  GVGKTMIAQTLANVLKVPFAIADATTLTQAG-YVGEDVENVLLRLIQAADYDIEAAE-HG 142

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           I+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  IN
Sbjct: 143 IIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQIN 202

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T +ILFI  GAF                                  H   P DL     +
Sbjct: 203 TKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFGII 262

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+ GR PV   L  L++     IL++ ++ ++ QY  +   +GI L+ T+D++ A+A  
Sbjct: 263 PELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIAKK 322

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           A    +     GAR L+TV+E  L DI F+A  D     V++  E V  
Sbjct: 323 AAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECVTD 366



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
            P E+   LD+YIIGQ +AK+ + +++ N +++     +      EL   N+LL+GPTGV
Sbjct: 27  KPTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATADEIELQKSNVLLLGPTGV 86

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT I++ LA +   PF   + T  T+ GYVG +VE ++  L+  A   +  +       
Sbjct: 87  GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAADYDIEAAEHGIIYI 146

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ +    +    I   + G+       ++    + +                 +  N 
Sbjct: 147 DEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQINTKNI 206

Query: 180 DIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               G +   ++   +    S  +G G + K +    K    L + E + L+
Sbjct: 207 LFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQD-NKINEALHQVEPEDLV 257


>gi|71982908|ref|NP_001021077.1| hypothetical protein D2030.2 [Caenorhabditis elegans]
 gi|33589133|emb|CAE45047.1| C. elegans protein D2030.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 470

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 184/502 (36%), Gaps = 130/502 (25%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD++++GQ+ AK+ +A+ +   +RR +         +      +  T    ++
Sbjct: 14  PTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHN-------IETGASSIYQTHAQTSS 66

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
             + L+     P  K+    F +              L  +A + +R S   +       
Sbjct: 67  SGKSLSNDGMDP--KMPRGVFYQD----------ELRLGQMASSELRNSIMQQQSNN--- 111

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                         +  N    FR      +    E            SN  + G + VG
Sbjct: 112 -------QPPSPAQSPRNAAPTFRALPEKEQSVRLEK-----------SNVLLVGPSGVG 153

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV------E 242
              L++  ++V+         + +  C    M        D+++V +  +Q         
Sbjct: 154 KTFLTQTLARVLD--------VPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKA 205

Query: 243 NYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             GIVFLDE DKI A   G+      VS EGVQ  LL LVEG+ V+ K G          
Sbjct: 206 QQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQ 265

Query: 290 -SINTDHILFIASGAFH-----VSRPAD-------------------------------- 311
             I+T  ILFIASGAF      V R  D                                
Sbjct: 266 VQIDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELL 325

Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       ++PE+ GRFPV V   S +K     ++T+ +++L+ Q K     + + 
Sbjct: 326 SKADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVD 385

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419
           L F+ ++++ +A +A++  +     GAR L++++E  L +  F+      ++V +  E +
Sbjct: 386 LSFSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFTVPGSDIESVHVSREAI 440

Query: 420 --------RLHIGDFPSETDMY 433
                            E D+ 
Sbjct: 441 LGEKEVEYSRRKSQVVEEEDVS 462


>gi|118474538|ref|YP_891518.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413764|gb|ABK82184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 406

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 57/334 (17%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++VF   + +      + D    DT    SN  + G    G   +++  ++ +   
Sbjct: 75  QEKAKKVFSVGVYNHYKRIFKQDAIEDDTEISKSNILLIGPTGSGKTLMAQTLARFLDVP 134

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  + +     +Q  +  G+VF+DE DKI        
Sbjct: 135 IAICDATSLTEAG-YVGEDVENILTKLLSAAGGDVQRAQQ-GVVFVDEIDKIARMGENRS 192

Query: 264 I--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EGS+V+             +  I+T +ILF+  GAF      
Sbjct: 193 ITRDVSGEGVQQALLKIIEGSTVNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEI 252

Query: 305 --------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSD 333
                                      +  P DL     +PE+ GR      L  +   D
Sbjct: 253 IERRIGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIPELIGRLHAIATLNEITTDD 312

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              ILT+ ++ L+ QY++L   +G  L F  D+I  +A  A+N  +     GAR L+++M
Sbjct: 313 MVKILTEPKNALLKQYQKLFAIDGANLKFDNDAIKEVATQAINRKT-----GARGLRSIM 367

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           E ++ DI F+  DL+   V+I  +          
Sbjct: 368 EDIMMDIMFNLPDLKGYDVIISKDVAIGKAKPLL 401



 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
           + +P+ +   LD Y+IGQ+ AK+  ++ + N ++R      + D  E+   NILL+GPTG
Sbjct: 58  DITPKLLKDVLDSYVIGQEKAKKVFSVGVYNHYKRIFKQDAIEDDTEISKSNILLIGPTG 117

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V+ +++    
Sbjct: 118 SGKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTKLLSAAGGDVQRAQQGVVF 177

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A +     I   + G+       ++      +                 D +N
Sbjct: 178 VDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSTVNIPPKGGRKHPNQDFIQIDTTN 237

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRD 222
              + GGA  G+  + E  +   V+G G+ K+ R   Q     +  D
Sbjct: 238 ILFVCGGAFDGLNEIIERRIGKNVLGFGQIKRGRDDKQNLISLVEPD 284


>gi|292670225|ref|ZP_06603651.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
 gi|292648177|gb|EFF66149.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia
           ATCC 43541]
          Length = 421

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 131/305 (42%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS--VSTKYG--- 289
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G   
Sbjct: 170 DIEKAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 228

Query: 290 ------SINTDHILFIASGAFHVSR----------------------------------P 309
                  I+T +ILFI  GAF                                      P
Sbjct: 229 PQQELLQIDTTNILFICGGAFDGIEEIIESRLGKKQMGFGAQVRSKKRVTVGALLSKVIP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L SL++     ILT+ ++ L+ Q+++L++ +G+ L F +
Sbjct: 289 EDLMKNGLIPEFIGRLPVVVTLNSLDEKALVRILTEPKNALVKQFQKLLELDGVRLTFED 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++  +A  A+   +     GAR L++++E ++ ++ +    +Q  T   +  + +    
Sbjct: 349 DALRLIAKEALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTACQVTKDVIANRS 403

Query: 424 GDFPS 428
               +
Sbjct: 404 DPILT 408



 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 10/215 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P+EI   LD+Y+IGQ +AK+++++A+ N ++R     +  +  EL   NIL++GPTG G
Sbjct: 63  KPKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGQNKNEDVELRKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++                 +      D +N  
Sbjct: 183 EIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQIDTTNIL 242

Query: 180 DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSV 212
            I GGA  GI  + E  L  K MG G + + +  V
Sbjct: 243 FICGGAFDGIEEIIESRLGKKQMGFGAQVRSKKRV 277


>gi|227833710|ref|YP_002835417.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184717|ref|ZP_06044138.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254763843|sp|C3PI25|CLPX_CORA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|227454726|gb|ACP33479.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 431

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 139/319 (43%), Gaps = 67/319 (21%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  +  D+E++I         SN  + G    G   L++  ++++          S+ + 
Sbjct: 111 RRKKAQDEEVEI-------SKSNILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEA 163

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  + +GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 164 G-YVGEDVENILLKLLQAADFDVERAQ-HGIIYVDEVDKISRKSENPSITRDVSGEGVQQ 221

Query: 274 DLLPLVEGSSV-----------STKYGSINTDHILFIASGAF------------------ 304
            LL ++EG+             + ++  ++T +ILFI +GAF                  
Sbjct: 222 ALLKILEGTVAAIPPQGGRKHPNQEFIQLDTTNILFIVAGAFAGLDKVISERVGKKGVGF 281

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                              RP DL     +PE  GR PV   + +L++     +L + ++
Sbjct: 282 GAKLETKDEKESVDFFSQVRPEDLVKFGLIPEFIGRLPVVATVDNLDRESLVKVLVEPKN 341

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L+ QY+ L   +G  L F +++++A+A++A+   +     GAR L+ +ME +L  I + 
Sbjct: 342 SLVKQYQRLFSMDGAELHFEDEALEAIAELALERKT-----GARGLRAIMEELLVPIMYD 396

Query: 404 ASDLQE-KTVVIDAEYVRL 421
             D ++  +V I  + V  
Sbjct: 397 LPDREDIASVHITQDCVTD 415



 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 19/239 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKNI 56
           P EI + LD+Y+IGQ  AKR +++A+ N ++R +               D   E+   NI
Sbjct: 68  PSEISAFLDKYVIGQDQAKRVLSVAVYNHYKRIKAEEAAGLEGRRKKAQDEEVEISKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           ++      DEV + +  +    I   + G+       ++    +                
Sbjct: 188 AQHGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEF 247

Query: 172 TSSDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              D +N       +   L+  +SE   K       K      ++      +   + L+
Sbjct: 248 IQLDTTNILFIVAGAFAGLDKVISERVGKKGVGFGAKLETKDEKESVDFFSQVRPEDLV 306


>gi|229826183|ref|ZP_04452252.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC
           49176]
 gi|229789053|gb|EEP25167.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC
           49176]
          Length = 503

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 63/323 (19%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             E + KE DIE+  +     N  + G    G   L +  ++++          ++ +  
Sbjct: 190 SAEKTKKEEDIEIEKS-----NMLMIGPTGSGKTYLVKNLARLLQVPIAITDATTLTEA- 243

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
              + D+ + ++       D+      +GIVF+DE DKI  + + +   VS E VQ+ LL
Sbjct: 244 -GYIGDDVESVLSKLLADADNDVEAAEHGIVFIDEIDKIAKKKNTHSRDVSGEAVQQGLL 302

Query: 277 PLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------------- 304
            L+EGS V    G           +INT +ILFI  GAF                     
Sbjct: 303 KLLEGSEVEIPVGATSKNAMVPMTTINTRNILFICGGAFPDLSDIVKRRLNKQAAIGFKS 362

Query: 305 ------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                R   ++PE  GR P+   +  L+K     +L++ ++ ++
Sbjct: 363 DLKDKYDDEKNILSKVTTEDLRQYGMIPEFLGRLPIVCAVDELDKDMLIKVLSEPKNAIL 422

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS- 405
            QY++L++ + + L+F+ED+ + +A+ A+   +     GAR L+ ++E  + DI +    
Sbjct: 423 KQYEKLLEFDEVKLEFSEDAKEIIAERALERKT-----GARALRAIIEEFMLDIMYEIPK 477

Query: 406 DLQEKTVVIDAEYVRLHIGDFPS 428
           D     V+I  +Y+         
Sbjct: 478 DNNIGKVIITRDYIEGKGSPVIE 500



 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 17/265 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNIL 57
           + L    +P  I  +LD Y+IGQ+ AK+ +++A+ N ++R    +   +   E+   N+L
Sbjct: 149 LDLNNIPAPHIIKEKLDEYVIGQELAKKQISVAVYNHYKRISAEKTKKEEDIEIEKSNML 208

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT + + LARL   P    + T  TE GY+G +VE ++  L+  A N V  +
Sbjct: 209 MIGPTGSGKTYLVKNLARLLQVPIAITDATTLTEAGYIGDDVESVLSKLLADADNDVEAA 268

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               V     I+  ++I       +   +   V +  L+  E    E++I V  TS +  
Sbjct: 269 EHGIV----FIDEIDKIAKKKNTHSRDVSGEAVQQGLLKLLE--GSEVEIPVGATSKNAM 322

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                      +      F  +    +++  + +      +L     D    +  V  + 
Sbjct: 323 VPMTTINTRNILFICGGAFPDLSDIVKRRLNKQAAIGFKSDLKDKYDDEKNILSKVTTED 382

Query: 238 I-------QMVENYGIVF-LDEFDK 254
           +       + +    IV  +DE DK
Sbjct: 383 LRQYGMIPEFLGRLPIVCAVDELDK 407


>gi|254468834|ref|ZP_05082240.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta
           proteobacterium KB13]
 gi|207087644|gb|EDZ64927.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta
           proteobacterium KB13]
          Length = 417

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 131/315 (41%), Gaps = 73/315 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +  +          ++ +              D++ + + 
Sbjct: 110 SNILLIGPTGSGKTLLAQSLASFLNVPFVIADATTLTEA--------GYVGEDVENIMQK 161

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S   
Sbjct: 162 LLQKCDYDVSKAQKGIIYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPP 221

Query: 287 ---------KYGSINTDHILFIASGAF--------------------HVSRPAD------ 311
                    ++  I+T +ILFI  GAF                    +V+   D      
Sbjct: 222 QGGRKHPNQEFVQIDTSNILFICGGAFDGLEKVIQRRLESNSIGFGANVASKNDSRTTYQ 281

Query: 312 --------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         L+PE  GR PV   L+ L+      IL + ++ LI QYK+L + EG
Sbjct: 282 LLKETESEDLVKFGLIPEFIGRLPVISALEPLDIDALTKILIEPKNALIKQYKKLFEIEG 341

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + L+F + ++  +A  A++ N+     GAR L++++E  L+D+ F    D   + V+ID 
Sbjct: 342 VELEFRDQALIHIAKKALDRNT-----GARGLRSILEETLQDVMFDIPSDKTIEKVIIDE 396

Query: 417 EYVRLHIGDFPSETD 431
           + +  +       +D
Sbjct: 397 KTITENNKPILIHSD 411



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 9/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI  +L+ +IIGQ  AK+++++A+ N ++R    +D   ++   NILL+GPTG GKT
Sbjct: 65  KPQEIFDQLNHHIIGQNHAKKSLSVAVYNHYKRLGSNSD-DIKIAKSNILLIGPTGSGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA     PF+  + T  TE GYVG +VE I++ L+      V ++++     DEV
Sbjct: 124 LLAQSLASFLNVPFVIADATTLTEAGYVGEDVENIMQKLLQKCDYDVSKAQKGIIYIDEV 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + +  +    I   + G+       ++    +                   D SN   I
Sbjct: 184 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQIDTSNILFI 243

Query: 182 PGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            GGA  G+  + +  L S  +G G     +   +  Y  L   ES+ L+
Sbjct: 244 CGGAFDGLEKVIQRRLESNSIGFGANVASKNDSRTTYQLLKETESEDLV 292


>gi|157738413|ref|YP_001491097.1| ATP-dependent protease ATP-binding subunit ClpX [Arcobacter
           butzleri RM4018]
 gi|157700267|gb|ABV68427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter
           butzleri RM4018]
          Length = 407

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 147/360 (40%), Gaps = 60/360 (16%)

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           N  ++    E++ +     +  + + ++G+        V            KEI+ ++  
Sbjct: 47  NDKKDEELKEIKIKTPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQKEINDDIEL 106

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
             S++      G    G   L++  SK +          S+ +    +  D  + +  + 
Sbjct: 107 NKSNVLLI---GPTGSGKTLLAQTISKYLDVPLAIADATSLTEAG-YVGDDVENVVTRLV 162

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYG 289
                 I+  E  GI+F+DE DKI        I   VS EGVQ+ LL +VEG+ V+    
Sbjct: 163 QAANGDIKKAE-RGIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGAVVNVPPK 221

Query: 290 -----------SINTDHILFIASGAFH------------------------------VSR 308
                       ++T +ILFI  GAF                               +S+
Sbjct: 222 GGRKHPGQEALQVDTTNILFICGGAFDGLEDIIKKKQGANVLGFNQDKKSKNNEDKIISK 281

Query: 309 -------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE+ GR  +   L  + + D   ILT+ ++ LI QY +L + + ++L+
Sbjct: 282 VETDDLVKYGLIPELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLE 341

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           F +D++  LA +A+   +     GAR L++++E ++ DI F     + KTVVI  E V  
Sbjct: 342 FEKDALKELAKLAIVRKT-----GARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVVEK 396



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 9/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R     ++ D  EL   N+LL+GPTG G
Sbjct: 61  TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQKEINDDIELNKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +++    P    + T  TE GYVG +VE ++  LV  A   ++++ R     D
Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAERGIIFID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A ++    I   + G+       ++    + +                 D +N  
Sbjct: 181 EVDKIARMSENRSITRDVSGEGVQQALLKIVEGAVVNVPPKGGRKHPGQEALQVDTTNIL 240

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            I GGA  G+ ++ +        G  +  +    +    + + E+D L+
Sbjct: 241 FICGGAFDGLEDIIKKKQGANVLGFNQDKKSKNNED-KIISKVETDDLV 288


>gi|109946697|ref|YP_663925.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           acinonychis str. Sheeba]
 gi|109713918|emb|CAJ98926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter
           acinonychis str. Sheeba]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 134/344 (38%), Gaps = 60/344 (17%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               R  F+++L   E   +     + +     SN  + G    G   +++  +K +   
Sbjct: 102 NHYKRLSFKERLNKQESDLEL--EHLEEVELGKSNILLIGPTGSGKTLMAQTLAKHLDIP 159

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  S+ +    +  D  + L  +      ++Q  +  GIVF+DE DKI        
Sbjct: 160 IAISDATSLTEAG-YVGEDVENILTRLLQASDWNVQKAQK-GIVFIDEIDKISRLSENRS 217

Query: 264 I--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------ 304
           I   VS EGVQ+ LL +VEGS V+             +  I+T  ILFI +GAF      
Sbjct: 218 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 277

Query: 305 --------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSD 333
                                     H+ +  DL     +PE+ GR P+   L S++   
Sbjct: 278 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVSYGLIPELIGRLPILSTLDSISLEA 337

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              IL   ++ LI QY++L K + + L F E++I  +A +A+   +     GAR L+ ++
Sbjct: 338 MVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLALERKT-----GARGLRAII 392

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E    DI F    L+   V I  + V                IL
Sbjct: 393 EDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK-IL 435



 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-------------PKN 55
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L  +                 N
Sbjct: 75  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKERLNKQESDLELEHLEEVELGKSN 134

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +   V+
Sbjct: 135 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 194

Query: 116 ESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE-- 168
           ++++  V     ++ S  +E R I   + G+       ++    L +          E  
Sbjct: 195 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGN 254

Query: 169 -VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
            +   +SDI          +  +        V+G  ++K  +   Q+    L++
Sbjct: 255 FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-QEAILHLVQ 307


>gi|322435044|ref|YP_004217256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX9]
 gi|321162771|gb|ADW68476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX9]
          Length = 428

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 128/308 (41%), Gaps = 69/308 (22%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +KV+          ++ +    +  D  + ++ +      
Sbjct: 116 SNILLVGPTGSGKTLLAQTLAKVLDVPFAIVDATTLTEAG-YVGEDVENIILKLLQAAEG 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            +   +  GI+++DE DKI  +D    I   VS EGVQ+ LL L+EG+  +         
Sbjct: 175 DVTRAQQ-GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------------- 304
              ++ +++T +ILFI  GAF                                       
Sbjct: 234 PHQEFTAVDTTNILFICGGAFVGLEKVIGRRVGKKALGFKTLTDAEKLDGDVTPIRAQRD 293

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                 + P DL     +PE  GR PV   L  L++     ILT  ++ ++ QY +L   
Sbjct: 294 AELLRQAEPQDLLKYGLIPEFVGRLPVMGVLDELDEVALIEILTKPKNAILKQYIKLFDF 353

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           EG+ + FT+D+   +A  A+        +GAR L+ ++E ++ D+ +    + + K + I
Sbjct: 354 EGVKVTFTDDAAREIAREALQRK-----VGARGLRMILEELMLDLMYYVPGNKKVKELSI 408

Query: 415 DAEYVRLH 422
            AE V+ H
Sbjct: 409 TAEMVKKH 416



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 15/264 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P+E+ + LD Y+IGQ   K+ +A+A+ N ++R Q+        EL   NILLVGPTG G
Sbjct: 68  KPQEVRASLDEYVIGQDQTKKKLAVAVYNHYKRIQMNKTRGNDVELAKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ LA++   PF  V+ T  TE GYVG +VE II  L+  A   V  ++      D
Sbjct: 128 KTLLAQTLAKVLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAAEGDVTRAQQGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ +    +    I   + G+       ++    + +              T+ D +N  
Sbjct: 188 EIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPHQEFTAVDTTNIL 247

Query: 180 DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID---MDTVH 234
            I GGA VG+  +    +  K +G               P   + +++ L      D + 
Sbjct: 248 FICGGAFVGLEKVIGRRVGKKALGFKTLTDAEKLDGDVTPIRAQRDAELLRQAEPQDLLK 307

Query: 235 RDSI--QMVENYGIVFLDEFDKIV 256
              I   +     +  LDE D++ 
Sbjct: 308 YGLIPEFVGRLPVMGVLDELDEVA 331


>gi|262277076|ref|ZP_06054869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
 gi|262224179|gb|EEY74638.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha
           proteobacterium HIMB114]
          Length = 423

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 60/304 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + ++ +      
Sbjct: 109 SNILLIGPTGCGKTLLAQTLAKILDVPFTMADATTLTEAG-YVGEDVENIILKLLQAADY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 168 NVEKAQ-RGIVYIDEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 227 PQQEFLQVDTTNILFIVGGAFAGIDKIISDRGQGSSIGFGAKIKDKIKKGVGELIKDVEP 286

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DLL     PE  GR P+   L+ L++     IL + +++L  QY +L + EG+ L F +
Sbjct: 287 EDLLKFGLIPEFIGRLPIISTLEDLDEESLVQILEEPKNSLTKQYSKLFEIEGVKLTFAK 346

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           D++ A+A  A+   +     GAR L++++E VL +  F    ++    V+++ E +  + 
Sbjct: 347 DALKAIAQKAIVRKT-----GARGLRSIIEEVLLETMFDLPSIEGVDEVILNKEVINGNT 401

Query: 424 GDFP 427
               
Sbjct: 402 KPLM 405



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 8/223 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           +P+EI S L+ Y+IGQ+ AK+ +++A+ N ++R           EL   NILL+GPTG G
Sbjct: 61  TPKEIFSILNEYVIGQKKAKQILSVAVHNHYKRLGHTEKSSNDVELAKSNILLIGPTGCG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE II  L+  A   V +++R     D
Sbjct: 121 KTLLAQTLAKILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIVYID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + +       I   + G+       ++    +            +      D +N  
Sbjct: 181 EVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 240

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            I GGA  GI  +     +    G   KI+  ++K   EL++D
Sbjct: 241 FIVGGAFAGIDKIISDRGQGSSIGFGAKIKDKIKKGVGELIKD 283


>gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
 gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus
           prevotii DSM 20548]
          Length = 404

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 136/314 (43%), Gaps = 59/314 (18%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
             I+  E D ++    S   N  + G    G   L++  ++ +          S+ +   
Sbjct: 93  KRINSNEEDSDIELQKS---NILMLGPTGSGKTLLAQTLARKLNVPFAIADATSLTEAG- 148

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D  + ++ +       I + E  GI+++DE DKI  +     I   VS EGVQ+ L
Sbjct: 149 YVGEDVENIILKLVQAADYDIDIAE-RGIIYVDEIDKITRKSENPSITRDVSGEGVQQAL 207

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------------- 304
           L L+EG+  +            +Y  ++T +ILFI  GAF                    
Sbjct: 208 LKLIEGTEANVPPQGGRKHPSQEYIQVDTTNILFILGGAFDGIEDIINRRLSEKTIGFGA 267

Query: 305 HVSRPA---------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
            V++ A                L+PE  GR P+ V L +L       IL + +++ + QY
Sbjct: 268 SVTKNASASLKEVNTEDLLKYGLIPEFIGRVPIVVSLDALEVDSLVKILKEPKNSFVRQY 327

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           ++L + +G+ L F +++++ +A+ A N  +     GAR L+T+ME +L D+ F    + +
Sbjct: 328 QKLFELDGVKLTFEDEALEKIAEKAYNQKT-----GARGLRTIMENLLLDLMFEIPSIDD 382

Query: 410 -KTVVIDAEYVRLH 422
            + V++  E +   
Sbjct: 383 LEEVIVTKESIDDK 396



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD Y+IGQ DAK+ +++A+ N ++R     +  D EL   NIL++GPTG GK
Sbjct: 62  TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T +++ LAR    PF   + T  TE GYVG +VE II  LV  A   +  + R
Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAADYDIDIAER 174


>gi|291542674|emb|CBL15784.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus
           bromii L2-63]
          Length = 446

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 121 SNVLLLGPTGVGKTLLAQTLAKALDVPFAIADATTLTEAG-YVGEDVENILLKLIQAADF 179

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  +         
Sbjct: 180 DIEKAE-HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKH 238

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------------- 304
              +Y  I+T +ILFI  GAF                                       
Sbjct: 239 PQQEYLQIDTKNILFICGGAFDGLEKIVEKRKGSSVIGFESLVQSKQELDSTDWMKEVTA 298

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           H      ++PE+ GR PV   L  L+      ILT  +++++ QYK+L + +G+ L F E
Sbjct: 299 HDLVKYGIIPELIGRLPVITALSGLDTDALVKILTVPKNSIVQQYKKLFELDGVELLFEE 358

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           +++ A+A  A + ++     GAR L+ +ME +L D+ F A  D     ++I    ++
Sbjct: 359 EALRAIAQQAQDQHT-----GARGLRGIMEDILTDLMFEAPSDPTIDKIIITEGVIK 410



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI + LD Y+IGQ  AK  +++A+ N ++R     D   +    N+LL+GPTGVGK
Sbjct: 75  LKPKEIKTILDEYVIGQDHAKVTLSVAVYNHYKR-AFSNDESVDFAKSNVLLLGPTGVGK 133

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++       DE
Sbjct: 134 TLLAQTLAKALDVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDIEKAEHGIIYIDE 193

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    + +          +      D  N   
Sbjct: 194 IDKIARKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPQQEYLQIDTKNILF 253

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 254 ICGGAFDGLEKIVE 267


>gi|302545418|ref|ZP_07297760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463036|gb|EFL26129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           himastatinicus ATCC 53653]
          Length = 428

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 127/301 (42%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 233 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 292

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY+ L + +G+ LDF  
Sbjct: 293 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDR 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ ++E VL    +     ++   VVI  + V  ++
Sbjct: 353 PALEAIADQAILRGT-----GARGLRAIIEEVLMSAMYEVPSRKDVARVVITEDVVHSNV 407

Query: 424 G 424
            
Sbjct: 408 N 408



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 32/244 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            PREI   L+ Y++GQ+ AK+++++A+ N ++R Q         D   EL   NILL+GP
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKSLSVAVYNHYKRVQAGENGSHSKDDGIELAKSNILLLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES---- 117
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 123 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 182

Query: 118 ----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                 D+V  ++              ++ +L  L G TA+           + G     
Sbjct: 183 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHPH 234

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +  I++  T+          G    I + +       G+  + K  +     + E+M ++
Sbjct: 235 QEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPED 294

Query: 224 SDRL 227
             + 
Sbjct: 295 LVKF 298


>gi|110597770|ref|ZP_01386054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340677|gb|EAT59157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           ferrooxidans DSM 13031]
          Length = 438

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 140/325 (43%), Gaps = 64/325 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E    E D  V + S    N  + G    G   L++  + ++          
Sbjct: 109 HYKRIESQEWMHDEDDEVVIEKS----NILLIGPTGTGKTLLAQTLANMLEVPFSIVDAT 164

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 165 SLTEAG-YVGDDVETILARLLHASDFNLERAE-RGIIYVDEIDKIARKSANVSITRDVSG 222

Query: 269 EGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+ V    K G         +INT +ILFI  GAF          VS+
Sbjct: 223 EGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDRLIAKRVSK 282

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L  L++   R IL
Sbjct: 283 SSMGFGSKVKSKQTGYDPEILRYVTQDDLHEYGLIPEFIGRLPVISTLDLLDEKALRNIL 342

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ ++ QYK+L + +G+ L+FTE+++D +  +A+   +     GAR L++V+E V+ 
Sbjct: 343 VEPKNAIVKQYKKLFEMDGVELEFTEEALDKVVSIAIERGT-----GARALRSVLENVMI 397

Query: 399 DISFSASDLQEK-TVVIDAEYVRLH 422
           DI F    ++     +I A+ +   
Sbjct: 398 DIMFELPSMKNTHRCLITADTIENK 422



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 16/292 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
           SP+ I+  LD+Y++GQ+ AK+++++A+ N ++R +    + DE     +   NILL+GPT
Sbjct: 80  SPKAIMDSLDKYVVGQEIAKKSLSVAVYNHYKRIESQEWMHDEDDEVVIEKSNILLIGPT 139

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA +   PF  V+ T  TE GYVG +VE I+  L+  +   +  + R   
Sbjct: 140 GTGKTLLAQTLANMLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAERGII 199

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +A   I   + G+       ++    +            E    + +  
Sbjct: 200 YVDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTK 259

Query: 178 NF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           N   I GGA  G+  L          G   K++             E  R +  D +H  
Sbjct: 260 NILFICGGAFEGLDRLIAKRVSKSSMGFGSKVKSKQTG-----YDPEILRYVTQDDLHEY 314

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            +       +  +   D +  +   N +   +  + +    L E   V  ++
Sbjct: 315 GLIPEFIGRLPVISTLDLLDEKALRNILVEPKNAIVKQYKKLFEMDGVELEF 366


>gi|291460375|ref|ZP_06599765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416942|gb|EFE90661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 91/359 (25%), Positives = 150/359 (41%), Gaps = 66/359 (18%)

Query: 123 REQASINAE--ERILDA--LVGKTATSNTREVFRKKLRDGEISDKEIDIE--VADTSSDI 176
           RE+A   AE   ++L    + G        +   KK+    + +    I   + D     
Sbjct: 50  REEAEAQAEITPKLLKPKEIKGFLDEYVIGQDEAKKVLSVAVYNHYKRISSRIQDIEVQK 109

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++G         ++ +    +  D  + L+ +      
Sbjct: 110 SNILLIGATGTGKTYLAQTLAKILGVPFAIADATALTEAG-YVGEDVENILLKLIQAANL 168

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 169 DVKKAE-YGIIYIDEVDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 227

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              +   INT +ILFI  GAF                                     +P
Sbjct: 228 PQQELIQINTKNILFICGGAFDGLEKIIEKRIASGSIGFGAEIVEKNRNSYDELLKKVQP 287

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR P+ V L+S +    + ILT+ ++ LI QY+ L + +G+ L FTE
Sbjct: 288 EDLVKFGLIPEFIGRVPIDVELESHDVESLKRILTEPKNALIRQYQRLFELDGVELSFTE 347

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLH 422
           D+I A+A+ A+   +     GAR L+++ME ++  + +    D     V I  E V   
Sbjct: 348 DAIRAVAEKAIQRKT-----GARGLRSIMEDIMMGLMYEIPSDPSISAVEITREVVEGR 401



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R         E+   NILL+G TG GK
Sbjct: 64  LKPKEIKGFLDEYVIGQDEAKKVLSVAVYNHYKRISSRIQ-DIEVQKSNILLIGATGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   V+++       DE
Sbjct: 123 TYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAANLDVKKAEYGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V +    +    I   + G+       ++    +            +      +  N   
Sbjct: 183 VDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQINTKNILF 242

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+  + E
Sbjct: 243 ICGGAFDGLEKIIE 256


>gi|238018908|ref|ZP_04599334.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
 gi|237864392|gb|EEP65682.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748]
          Length = 410

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 137/331 (41%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+        N    G    G   L++  +K++          S+
Sbjct: 83  NHYKRLQTDNVVDDVELQKA-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 137

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EG
Sbjct: 138 TEAG-YVGEDVENILLKIIQAADYDIARAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 195

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 196 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDGMDKVITKRTAKKT 255

Query: 305 -------------HVSR------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                        +VS       P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 256 LGFGADVQRKEERNVSAILKDVVPEDLLKFGLIPEFIGRLPVVVTLDQLDREALIQILTK 315

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L FTED+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 316 PKNALTKQYEKILSLDGVELTFTEDALEEIADEALQRKT-----GARGLRAIIEKVMKRV 370

Query: 401 SFSASDLQEK-TVVIDAEYVRLHIGDFPSET 430
            F    + E    +++ E V           
Sbjct: 371 MFEVPSMPEVAKCIVNRESVLSTGEPILKNE 401



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 55  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 114

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  + R     DE
Sbjct: 115 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAERGIIYIDE 174

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 175 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILF 234

Query: 182 PGGASVGILN 191
             G +   ++
Sbjct: 235 ICGGAFDGMD 244


>gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
 gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus
           F0268]
          Length = 438

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 133/319 (41%), Gaps = 60/319 (18%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           K I  +V D     SN  + G    G   L++  +K++G         ++ +    +  D
Sbjct: 96  KRITSKVRDIDVQKSNILMIGPTGTGKTYLAQTLAKILGVPFAIADATALTEAG-YVGED 154

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 155 VENILLKLIQAADYDISKAEI-GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILE 213

Query: 281 GSSVST-----------KYGSINTDHILFIASGAFH------------------------ 305
           G+  S            +   I+T +ILFI  GAF                         
Sbjct: 214 GTVASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLEHIIEKRIASGSIGFGAEIVEK 273

Query: 306 ----------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                       +P DL     +PE  GR PV V L S +    + ILT  ++ L+ QY+
Sbjct: 274 NKDNYDDVLKQVQPEDLTKFGLIPEFIGRVPVDVELSSHDVDSLKRILTTPKNALVKQYQ 333

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L + +G+ L F++D++ A+A+ AV   +     GAR L+++ME ++ +I +    D   
Sbjct: 334 KLFEMDGVGLSFSDDAVTAIAEKAVQRKT-----GARGLRSIMEGMMTEIMYEIPSDEDI 388

Query: 410 KTVVIDAEYVRLHIGDFPS 428
             V I  + V         
Sbjct: 389 AEVEITKDVVENQAKPRVE 407



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD Y+IGQ +AK+ +++A+ N ++R        D +   NIL++GPTG GK
Sbjct: 64  LKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRITSKVRDID-VQKSNILMIGPTGTGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++ G PF   + T  TE GYVG +VE I+  L+  A   + ++       DE
Sbjct: 123 TYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAADYDISKAEIGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    +            +      D +N   
Sbjct: 183 IDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQIDTTNILF 242

Query: 181 IPGGASVGILNLSE 194
           I GGA  G+ ++ E
Sbjct: 243 ICGGAFDGLEHIIE 256


>gi|261366991|ref|ZP_05979874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Subdoligranulum variabile DSM 15176]
 gi|282571109|gb|EFB76644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Subdoligranulum variabile DSM 15176]
          Length = 451

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 62/316 (19%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
              + +  + +      SN  + G +  G   L++  +K++          ++ +    +
Sbjct: 120 HYKRILSGQESSVELQKSNVLMLGPSGTGKTLLAQTLAKMLNVPFAIADATTLTEAG-YV 178

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
             D  + L+ +       I   E  GI+++DE DKI  +     I   V  EGVQ+ LL 
Sbjct: 179 GEDVENILLKLIQAADFDIPKAEI-GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLK 237

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSRPAD---------- 311
           +VEG+  +            ++  INT +ILFI  GAF      + +  D          
Sbjct: 238 IVEGTVSNVPPNGGRKHPQQEFIQINTKNILFICGGAFDGLEKLIQKRTDNASMGFGSQL 297

Query: 312 --------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE+ GR PV   L  L++     +LT+ ++++
Sbjct: 298 RTTLDKDETRQKLLKKVEPDDLVRFGLIPELIGRLPVVTVLDPLDEDALVRVLTEPKNSI 357

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYKEL+  +   L FT+ ++ A+A   V   S     GAR L++V+E +L  I +   
Sbjct: 358 VRQYKELLHLDNAELVFTDAALHAIAKKTVERKS-----GARGLRSVVEDLLIPIMYDIP 412

Query: 406 -DLQEKTVVIDAEYVR 420
            D     V IDA+ V 
Sbjct: 413 SDASITKVTIDADTVE 428



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P EI + LD+Y+IGQ  AK+ +A+++ N ++R     +   EL   N+L++GP+G GK
Sbjct: 90  LTPAEIKAGLDQYVIGQDAAKKVLAVSVYNHYKRILSGQESSVELQKSNVLMLGPSGTGK 149

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++       DE
Sbjct: 150 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADFDIPKAEIGIIYIDE 209

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    + +   +      +      +  N   
Sbjct: 210 IDKITRKSENPSITRDVGGEGVQQALLKIVEGTVSNVPPNGGRKHPQQEFIQINTKNILF 269

Query: 181 IPGGASVGILNLSE---LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+  L +     + +    + +      +     L + E D L+
Sbjct: 270 ICGGAFDGLEKLIQKRTDNASMGFGSQLRTTLDKDETRQKLLKKVEPDDLV 320


>gi|212690530|ref|ZP_03298658.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
 gi|212666879|gb|EEB27451.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855]
          Length = 370

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 67/328 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L+  +  D EI+          SN  + G    G   L+   +K++        
Sbjct: 50  NHYKRLLQKVDKDDIEIE---------KSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVD 100

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V   ++   E  GIVF+DE DKI  +     I   V
Sbjct: 101 ATVLTEAG-YVGEDIESLLTRLLQVADYNVAEAE-RGIVFIDEIDKIARKGDNPSITRDV 158

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EGS V+            K   +NT +ILFI  GAF           
Sbjct: 159 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIERKIAQRL 218

Query: 305 --HVS-------------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
             HV                          +   L+PEI GR P+  +L  L+++  R I
Sbjct: 219 NTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLIPEIIGRLPILTYLNPLDRTALRNI 278

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++++I QY +L + +G+ L+F  +  + + D A+        +GAR L++++E ++
Sbjct: 279 LTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDKAIEYK-----LGARGLRSIVETIM 333

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGD 425
            D+ F     + K   +  ++ +  +G 
Sbjct: 334 MDVMFEIPSQKAKKYEVTLDFAKQQMGK 361



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           + L     P+EI   LD+YIIGQ DAKR +++A+ N ++R     D  D E+   NI++V
Sbjct: 15  LNLKELPKPKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMV 74

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT ++R +A+L   PF  V+ T  TE GYVG ++E ++  L+ VA   V E+ R
Sbjct: 75  GSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 134

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    + +          +      
Sbjct: 135 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 194

Query: 175 DISNFDIPGGASVGILN 191
           +  N     G +   + 
Sbjct: 195 NTKNILFICGGAFDGIE 211


>gi|167754485|ref|ZP_02426612.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
 gi|167659110|gb|EDS03240.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216]
          Length = 429

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 124/310 (40%), Gaps = 61/310 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E ++   D SN  + G    G   ++   +K++           + +        ES   
Sbjct: 119 EASEVELDKSNILLVGPTGTGKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVES--- 175

Query: 228 IDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSS 283
             +  + + +   VE    GIVF+DE DKI  +         VS EGVQ+ LL ++EG+ 
Sbjct: 176 -ILSRLLQVASYDVELAQRGIVFIDEIDKIARKSDNPSLTRDVSGEGVQQALLKILEGTV 234

Query: 284 VST-----------KYGSINTDHILFIASGA----------------------------- 303
           V+            ++  ++T +ILFI  GA                             
Sbjct: 235 VNVPPQGGRKHPEQQFVQVDTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRMNADSVDR 294

Query: 304 --------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                       R   L+PE+ GR PV  +++ L +   R ILT  ++ +I QY++L + 
Sbjct: 295 NNLMQYLMPQDLRSFGLIPELVGRLPVLTYMEPLGREALRSILTQPKNAIIKQYEKLFEM 354

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G+ L F ++ +D + D A+        +GAR L+++ E ++ D  F      E+   + 
Sbjct: 355 DGVKLVFDDEVLDYIVDKAIEYR-----LGARGLRSICEAIMMDTMFDIPSSGERRFEVT 409

Query: 416 AEYVRLHIGD 425
             Y R     
Sbjct: 410 LPYAREKFEK 419



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 10/232 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILL 58
           +K      P EI   LD+Y+IGQ DAKR +++A+ N ++R    +      EL   NILL
Sbjct: 73  LKFEDLLKPNEIKEFLDQYVIGQDDAKRYMSVAVYNHYKRLLHASGEASEVELDKSNILL 132

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VGPTG GKT ++R +A+L   PF  V+ T  TE GYVG +VE I+  L+ VA   V  ++
Sbjct: 133 VGPTGTGKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVESILSRLLQVASYDVELAQ 192

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    +   + G+       ++    + +          E     
Sbjct: 193 RGIVFIDEIDKIARKSDNPSLTRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQQFVQ 252

Query: 174 SDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            D  N     G +   +       L ++ MG GR     +        LM  
Sbjct: 253 VDTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRMNADSVDRNNLMQYLMPQ 304


>gi|91203982|emb|CAJ71635.1| strongly similar to ATPase subunit [Candidatus Kuenenia
           stuttgartiensis]
          Length = 420

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 146/362 (40%), Gaps = 76/362 (20%)

Query: 130 AEERILDALVGKTATSNT-----REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
             +++ + ++G+     T        +++ L      D E++IE        SN  + G 
Sbjct: 68  INDKLNEYIIGQEKAKRTLAVAVYNHYKRLLTSNRGKDDEVEIEK-------SNILLIGP 120

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G   L+   +K++          ++ +    +  D  + L+ +       ++  +  
Sbjct: 121 TGSGKTLLARTLAKLLNVPFAIADATTLTEAG-YVGEDVENILLGLLRNADFDVKRAQQ- 178

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +++ + I   VS EGVQ+ LL ++EG   +            KY  I
Sbjct: 179 GIIYIDEIDKIARKNASSSITRDVSGEGVQQALLKILEGVVSNVPPQGGRKHPEQKYIQI 238

Query: 292 NTDHILFIASGAF------------------------HVSRPAD---------------- 311
           +T +ILFI  G F                        H +   D                
Sbjct: 239 DTKNILFICGGTFSGVNEIIKRRIGKASIGFDTKKSTHETSDNDTSLGALLNKVEVEDLI 298

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++ E  GR PV V L  L + D   ++T+ ++ L+ QY++  + E   L+FT++++ 
Sbjct: 299 EYGMIVEFMGRLPVIVSLLPLTEQDMIKVMTEPKNALVKQYQKFFEMENAKLEFTDEALM 358

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFP 427
           A++ +A+   +     GAR L++V E  + D  +   D     T ++  + V   I    
Sbjct: 359 AISKIALKKET-----GARALRSVFESFMLDPMYHLPDCKNGSTFLVTPDVVNGKIPLIA 413

Query: 428 SE 429
            E
Sbjct: 414 QE 415



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTG 63
            +P EI  +L+ YIIGQ+ AKR +A+A+ N ++R        D   E+   NILL+GPTG
Sbjct: 63  LTPMEINDKLNEYIIGQEKAKRTLAVAVYNHYKRLLTSNRGKDDEVEIEKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A   V+ ++     
Sbjct: 123 SGKTLLARTLAKLLNVPFAIADATTLTEAGYVGEDVENILLGLLRNADFDVKRAQQGIIY 182

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  NA   I   + G+       ++    + +          E      D  N
Sbjct: 183 IDEIDKIARKNASSSITRDVSGEGVQQALLKILEGVVSNVPPQGGRKHPEQKYIQIDTKN 242

Query: 179 FDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQK----CYPELMRDESDRLIDMDT 232
                G +   +N  +     K       KK               L + E + LI+   
Sbjct: 243 ILFICGGTFSGVNEIIKRRIGKASIGFDTKKSTHETSDNDTSLGALLNKVEVEDLIEYGM 302

Query: 233 VHR 235
           +  
Sbjct: 303 IVE 305


>gi|291523502|emb|CBK81795.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Coprococcus catus GD/7]
          Length = 475

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 63/313 (20%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           ++   DIE+  +     N  + G    G   L +  ++++          S+ +     +
Sbjct: 154 TNTMDDIEIEKS-----NILMIGPTGCGKTYLVKTLARLLDVPLAITDATSLTEA--GYI 206

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            D+ + ++       D+       GI+F+DE DKI  + +     VS E VQ+ LL L+E
Sbjct: 207 GDDIESVVSKLLAAADNDTERAERGIIFIDEIDKIAKKKNTTARDVSGESVQQGLLKLLE 266

Query: 281 GSSVSTKYG-----------SINTDHILFIASGAF-------------HVS--------- 307
           GS V    G           +I+T +ILFI  GAF             H S         
Sbjct: 267 GSEVEVPVGATSKNAMVPLVTIDTRNILFICGGAFPDLENIVKERLTRHSSIGFSAELKD 326

Query: 308 -----------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            R   ++PE  GR P+ V L+ LN+     IL + ++ ++ QY+
Sbjct: 327 KYDQDKNIVSKVTIDDLRAFGMIPEFIGRLPITVTLEGLNRDMMIRILKEPKNAILRQYQ 386

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L+  + + L F ++++  +AD A+   +     GAR L++++E  + DI +    D   
Sbjct: 387 KLLALDEVDLRFDDEALGVIADKAIARKT-----GARALRSIIEEFMLDIMYEIPKDDNI 441

Query: 410 KTVVIDAEYVRLH 422
            +V I   Y+   
Sbjct: 442 GSVTITKAYIEGK 454



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 64/111 (57%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P  + ++LD ++IGQ  AK+A+A+A+ N ++R         E+   NIL++GPTG GKT 
Sbjct: 120 PHILKAKLDEFVIGQDQAKKAIAVAVYNHYKRVATNTMDDIEIEKSNILMIGPTGCGKTY 179

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N    + R
Sbjct: 180 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDTERAER 230


>gi|78223079|ref|YP_384826.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           metallireducens GS-15]
 gi|123756422|sp|Q39UH3|CLPX_GEOMG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|78194334|gb|ABB32101.1| ClpX, ATPase regulatory subunit [Geobacter metallireducens GS-15]
          Length = 417

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 137/336 (40%), Gaps = 64/336 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    IE     SD+    SN  + G    G   L++  ++++    
Sbjct: 80  QDRAKKILAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTGSGKTLLAQTLARILRVPF 139

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + ++++       ++  +  GI+++DE DKI  +     I
Sbjct: 140 AMADATNLTEAG-YVGEDVENIILNLLQAADYDVERAQK-GIIYIDEIDKIARKSDSPSI 197

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------ 305
              VS EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF       
Sbjct: 198 TRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTSNILFICGGAFAGLDNII 257

Query: 306 ----------------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                          P DL     +PE  GR PV   L  L+++
Sbjct: 258 QQRIGVKTLGFGADVKSKVEKKAGELLTDVTPEDLLKFGFIPEFIGRLPVLATLHELDEA 317

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL + +S L+ QY++L + E + L FT+ S+ A+A  A+   +     GAR L+++
Sbjct: 318 AMVQILKEPKSALVKQYQKLFEMEHVKLKFTDGSLVAIAREALKRKT-----GARGLRSI 372

Query: 393 MERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +E  + DI +        K VVI  + +        
Sbjct: 373 LENAMLDIMYEIPSQTMVKEVVISEDVIYNREKPII 408



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            PREI   LD Y+IGQ  AK+ +A+A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 65  KPREIKDVLDEYVIGQDRAKKILAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARILRVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +            +      D SN   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTSNILF 244

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSV-QKCYPELMRDESDRLI 228
           I GGA  G+ N+ +    V   G    ++  V +K    L     + L+
Sbjct: 245 ICGGAFAGLDNIIQQRIGVKTLGFGADVKSKVEKKAGELLTDVTPEDLL 293


>gi|269215645|ref|ZP_06159499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia
           exigua ATCC 700122]
 gi|269131132|gb|EEZ62207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia
           exigua ATCC 700122]
          Length = 452

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 60/308 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++  D     SN  + G    G   L++  ++ +          ++ +    +  D  +
Sbjct: 131 DVDADDVELAKSNVLLLGPTGSGKTLLAQTLARALRVPFAIADATTLTEAG-YVGEDVEN 189

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ + T     I+  E  GIV++DE DKI  +     I   VS EGVQ+ LL +VEG+ 
Sbjct: 190 ILLKLITAADFDIERAEI-GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTE 248

Query: 284 VST-----------KYGSINTDHILFIASGAF---------HVSR--------------- 308
            S            +   ++T +ILFI  GAF          V +               
Sbjct: 249 ASVPPQGGRKHPQQELIHLDTTNILFILGGAFVGLADIIGQRVGKTGIGFTSDLPESKKH 308

Query: 309 ----------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DL     +PE  GR PV   L  L + D   ILT+ ++ L+ QY  + 
Sbjct: 309 EEAELLAQVLPEDLNKFGMIPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQYARMF 368

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-V 412
             E   L FT D++ A+A  A   ++     GAR L+++ ERVL+DI F   + +  T V
Sbjct: 369 DFEDSKLTFTPDALRAIAHEAKERST-----GARGLRSICERVLQDIMFDLPEHEGATAV 423

Query: 413 VIDAEYVR 420
            +DA  + 
Sbjct: 424 TVDATDIE 431



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
            PRE+   L ++++GQ  AKRA+++A+ N ++R  L  D+     EL   N+LL+GPTG 
Sbjct: 93  KPRELYDLLSQHVVGQDAAKRALSVAVYNHYKRISLGQDVDADDVELAKSNVLLLGPTGS 152

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  +       
Sbjct: 153 GKTLLAQTLARALRVPFAIADATTLTEAGYVGEDVENILLKLITAADFDIERAEIGIVYI 212

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++                 +      D +N 
Sbjct: 213 DEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHLDTTNI 272

Query: 180 -DIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             I GGA VG+ + + +   K               +    L +   + L
Sbjct: 273 LFILGGAFVGLADIIGQRVGKTGIGFTSDLPESKKHEEAELLAQVLPEDL 322


>gi|218262312|ref|ZP_03476826.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223463|gb|EEC96113.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii
           DSM 18315]
          Length = 409

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ ++     D EI+          SN  + G    G   L+   +K++        
Sbjct: 89  NHYKRLIQKVTSDDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 139

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 140 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 195

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 196 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 255

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++S  R
Sbjct: 256 RLNTRVVGYAANENTAKVDRSNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRSTLR 315

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L   + I L F ED  + + D A+        +GAR L++++E 
Sbjct: 316 NILTEPKNSIIKQYIKLFAMDDIKLTFDEDVFEFIVDKALEFK-----LGARGLRSIVEA 370

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S     +K + +  EY +     
Sbjct: 371 VMMDAMYSMPSANKKKLHVTLEYAKEKFEK 400



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I + LD+Y+IGQ DAKR +++A+ N ++R        D E+   NI++VG TG GK
Sbjct: 61  KPEDIKAFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSDDVEIEKSNIIMVGATGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R     DE
Sbjct: 121 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQRGIVFIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          E    + D  N   
Sbjct: 181 IDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILF 240

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 241 VCGGAFDGIE 250


>gi|291165525|gb|EFE27575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Filifactor
           alocis ATCC 35896]
          Length = 424

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 63/313 (20%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV    S++      G    G   L++  +K++          ++ +    +  D  + L
Sbjct: 107 EVELQKSNVIMI---GPTGSGKTLLAQTLAKILHVPFAIADATALTEAG-YVGEDVENIL 162

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GI+++DE DKI  +         VS EGVQ+ LL ++E +  +
Sbjct: 163 LKLIQAANFDIEKAEK-GIIYIDEIDKIARKTDNPSLTRDVSGEGVQQALLKILESTKAN 221

Query: 286 TK-----------YGSINTDHILFIASGAF---------------------HVSRPAD-- 311
                        +  I+T +ILFI  GAF                     +  +  D  
Sbjct: 222 VPPQGGRKHPHQDFLQIDTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSN 281

Query: 312 ----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE   R PV V L++L++     ILT+ ++ L+ QYK+L + 
Sbjct: 282 ISFYEKVESQDLLKYGLIPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFEL 341

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414
           +G+ L+  ED++ A+A  A++       IGAR L++++E ++ DI +     ++   V+I
Sbjct: 342 DGVELEVEEDALIAIAKQAIDRK-----IGARGLRSILENIMIDIMYEIPSREDIGKVII 396

Query: 415 DAEYVRLHIGDFP 427
             + V        
Sbjct: 397 QEDCVTKKAKPIV 409



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGP 61
             P EI + LD Y+IGQ++AK+ +A+A+ N ++R              EL   N++++GP
Sbjct: 61  LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAANFDIEKAEK 178


>gi|53723666|ref|YP_103111.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|67642017|ref|ZP_00440780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|121600417|ref|YP_993273.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124383380|ref|YP_001029283.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126448291|ref|YP_001080783.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|166998704|ref|ZP_02264558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
 gi|254177862|ref|ZP_04884517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|254200062|ref|ZP_04906428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|254206397|ref|ZP_04912749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|254358193|ref|ZP_04974466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|61211429|sp|Q62JK8|CLPX_BURMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214762|sp|A3MKJ7|CLPX_BURM7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214763|sp|A2SBG4|CLPX_BURM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214764|sp|A1V4X0|CLPX_BURMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|52427089|gb|AAU47682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 23344]
 gi|121229227|gb|ABM51745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei SAVP1]
 gi|124291400|gb|ABN00669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10229]
 gi|126241161|gb|ABO04254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei NCTC 10247]
 gi|147749658|gb|EDK56732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei FMH]
 gi|147753840|gb|EDK60905.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei JHU]
 gi|148027320|gb|EDK85341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei 2002721280]
 gi|160698901|gb|EDP88871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei ATCC 10399]
 gi|238523065|gb|EEP86506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei GB8 horse 4]
 gi|243065059|gb|EES47245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           mallei PRL-20]
          Length = 423

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 134/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISCKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY++L   E + L+   D++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    L+    V+ID   +           D
Sbjct: 378 QALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIYED 415



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 22/236 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVY--- 184

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD----------- 175
                + I          S TR+V  + ++   +   E  +                   
Sbjct: 185 ----IDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240

Query: 176 --ISNFDIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              +   I GGA  G+   +++   K              +     L   E + LI
Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 296


>gi|116750477|ref|YP_847164.1| ATPase [Syntrophobacter fumaroxidans MPOB]
 gi|116699541|gb|ABK18729.1| ATPase AAA-2 domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 594

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 160/440 (36%), Gaps = 81/440 (18%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPK 54
           K+ F+  P E+ + LD+++I Q +AK  +A  +   + R +          +     +  
Sbjct: 56  KIRFDMKPEELEAYLDQFVIRQDEAKAVLATKISTHYNRIRFQRRRSRYGVENPVGRIKN 115

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++R+LV  A + +
Sbjct: 116 NILLIGPTGVGKTYLVKLIAQKIGVPFVKGDATKFSETGYVGGDVEDLVRELVVEADDDI 175

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
             +          I  +E  +D +                 R      +E D+++     
Sbjct: 176 ELAEY------GIIYVDE--VDKIASSNHYIGPDVSRTGVQRALLKPMEETDVDLKVPHD 227

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +S                           ++  +   ++                 TV+
Sbjct: 228 PVSQI----------------------QAIEQYRKTGKREKR---------------TVN 250

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
             +I  + +     L    K   R    GIG   +                        D
Sbjct: 251 TRNILFIMSGAFNGLAAIAK--KRMQKQGIGFGAQ-------------------IQSRED 289

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
              ++               E  GR PV   L+ L   D   IL +  + +I   KE  +
Sbjct: 290 DTKYLRHAKAEDLIEYGFESEFVGRLPVVAVLEPLEVEDLYQILKNVRNPIIQGKKEDFR 349

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           + GI + F +D++  LA+ A    +     GAR L +V+E+VL            + +V+
Sbjct: 350 SYGIDIKFEDDALRLLAEKAFEEKT-----GARGLVSVIEKVLLSFEKRLPSSGIQQLVV 404

Query: 415 DAEYV---RLHIGDFPSETD 431
             + V      +       D
Sbjct: 405 GRQVVLTPEEELARLFENPD 424


>gi|21673243|ref|NP_661308.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS]
 gi|46576607|sp|Q8KFC3|CLPX_CHLTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21646329|gb|AAM71650.1| ATP-dependent Clp protease, ATP-binding subunit Clpx [Chlorobium
           tepidum TLS]
          Length = 439

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 135/308 (43%), Gaps = 60/308 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  + ++          S+ +    +  D    L  +      
Sbjct: 132 SNILLIGPTGTGKTLLAQTLANLLEVPFTIADATSLTEAG-YVGDDVETILARLLHASDF 190

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV--STKYG--- 289
           +++  E  GI+++DE DKI  + +   I   VS EGVQ+ LL ++EGS V    K G   
Sbjct: 191 NLERAE-RGIIYVDEIDKIARKSANVSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKH 249

Query: 290 ------SINTDHILFIASGAF---------HVSRPA------------------------ 310
                 +INT +ILFI  GAF          VS+ +                        
Sbjct: 250 PEQQLININTKNILFICGGAFEGLDKIIARRVSKSSMGFGSKVRGKQTGYDPEILKLVTQ 309

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE  GR PV   L+ L+    R IL + ++ L+ QYK L + +G+ L+FT+
Sbjct: 310 DDLHDYGLIPEFIGRLPVMSVLEPLDAVALRNILVEPKNALVKQYKRLFEMDGVELEFTD 369

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++ +  +A+   +     GAR L++V+E V+ DI F     ++ +  VI AE +    
Sbjct: 370 EALERVVAIAIERGT-----GARALRSVLENVMIDIMFELPTRKDVQKCVITAETIDKTG 424

Query: 424 GDFPSETD 431
           G    + D
Sbjct: 425 GPVYEKKD 432



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 16/237 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64
           SP  I   LD+Y+IGQ+ AK+++A+A+ N ++R       +     +   NILL+GPTG 
Sbjct: 83  SPVNIKEALDQYVIGQEQAKKSLAVAVYNHYKRLDAHDWSSGDEVVIEKSNILLIGPTGT 142

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   +  + R     
Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAERGIIYV 202

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +A   I   + G+       ++    +            E    + +  N 
Sbjct: 203 DEIDKIARKSANVSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLININTKNI 262

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
               G +   L+  ++   SK       K            L      +L+  D +H
Sbjct: 263 LFICGGAFEGLDKIIARRVSKSSMGFGSKVRGKQTGYDPEIL------KLVTQDDLH 313


>gi|145219376|ref|YP_001130085.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|189044142|sp|A4SDM4|CLPX_PROVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145205540|gb|ABP36583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeovibrioides DSM 265]
          Length = 438

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 65/323 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E    + ++ +  +     N  + G    G   L++  + ++          
Sbjct: 110 HYKRIDSQEWQHDDDEVVIEKS-----NIMLIGPTGTGKTLLAQTLANLLEVPFSIVDAT 164

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 165 SLTEAG-YVGDDVETILARLLHASDFNLERAE-RGIIYVDEIDKIARKSANVSITRDVSG 222

Query: 269 EGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+ V    K G         +INT +ILFI  GAF          +S+
Sbjct: 223 EGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDRLIARRMSK 282

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L+ L++   R IL
Sbjct: 283 SSMGFGAGVADKKAGYDPGILKFVMQDDLHEYGLIPEFIGRLPVLSSLEPLDEHALRSIL 342

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY +L + +G+ L+F  +S+D +  +A+   +     GAR L++V+E V+ 
Sbjct: 343 VEPKNALIKQYAKLFEMDGVELEFAPESLDRVVAIALERGT-----GARALRSVLENVMI 397

Query: 399 DISFSASDLQE-KTVVIDAEYVR 420
           DI F    ++     +I A+ + 
Sbjct: 398 DIMFELPSMKGIGKCIITADTID 420



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 9/193 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTG 63
           SP+ ++  LD+Y++GQ+ AK+A+++A+ N ++R         D    +   NI+L+GPTG
Sbjct: 81  SPKALMESLDQYVVGQERAKKALSVAVYNHYKRIDSQEWQHDDDEVVIEKSNIMLIGPTG 140

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +   +  + R    
Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAERGIIY 200

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 201 VDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKN 260

Query: 179 FDIPGGASVGILN 191
                G +   L+
Sbjct: 261 ILFICGGAFEGLD 273


>gi|120434593|ref|YP_860284.1| ATP-dependent protease ATP-binding subunit ClpX [Gramella forsetii
           KT0803]
 gi|117576743|emb|CAL65212.1| ATP-dependent Clp protease ATP-binding subunit [Gramella forsetii
           KT0803]
          Length = 410

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 143/348 (41%), Gaps = 70/348 (20%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +E I+     K   S       K+L   E  D   D+E+  +     N  + G    G  
Sbjct: 70  DEYIIGQEQTKKVMSVAVYNHYKRLLQPENED---DVEIQKS-----NIVMVGETGTGKT 121

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVF 248
            ++   +K++           + +        E    RL+     + +  +     GIVF
Sbjct: 122 LMARTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNTEKAER----GIVF 177

Query: 249 LDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDH 295
           +DE DKI  +     I   VS EGVQ+ LL L+EG+SV+            K+  +NT++
Sbjct: 178 IDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTSVNVPPKGGRKHPDQKFIEVNTEN 237

Query: 296 ILFIASGA------------------FHVSRPAD--------------------LLPEIQ 317
           ILFIA GA                  F  S+  D                    L+PEI 
Sbjct: 238 ILFIAGGAFDGIERIISKRLNMQAVGFSASKSEDSIERTNLLKYIIPKDLKEFGLIPEII 297

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P   H+  L+K   R ILT+ ++ +I QYK+L + + I  D T+D++D + + AV  
Sbjct: 298 GRLPALTHMNPLDKETLRAILTEPKNAIIKQYKKLFEMDDIKFDITDDALDYIVNKAVEY 357

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
                 +GAR L+++ E +L D  F   +  E +  +  EY    +  
Sbjct: 358 K-----LGARGLRSLCEAILTDAMFELPESNEDSFTVTREYADDKLNK 400



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+ I S LD YIIGQ+  K+ +++A+ N ++R   P +  D E+   NI++VG TG GK
Sbjct: 61  KPKTIKSFLDEYIIGQEQTKKVMSVAVYNHYKRLLQPENEDDVEIQKSNIVMVGETGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T ++R +A++   P   V+ T  TE GYVG +VE I+  L+  A     ++ R  V
Sbjct: 121 TLMARTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNTEKAERGIV 176


>gi|24379392|ref|NP_721347.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus
           mutans UA159]
 gi|290580606|ref|YP_003484998.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
 gi|46576567|sp|Q8DUI0|CLPX_STRMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24377322|gb|AAN58653.1|AE014935_5 ATP-dependent protease Clp, ATPase subunit ClpX [Streptococcus
           mutans UA159]
 gi|254997505|dbj|BAH88106.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans
           NN2025]
          Length = 410

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 58/295 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 112 SNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
           +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 171 NVERAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF-------------------------------------HV 306
              +   I+T +ILFI  GAF                                       
Sbjct: 230 PQQEMIQIDTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKKIDDQSSYMQEIISED 289

Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
            +   L+PE  GR PV   L+ L   D   ILT+ ++ L+ QY+ L+  +G+ L+F +++
Sbjct: 290 IQKFGLIPEFIGRLPVLAALEQLTVDDLVKILTEPKNALVKQYQTLLSYDGVELEFDQEA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420
           + A+A  A+   +     GAR L++++E  + D+ F     ++ T V I  + V 
Sbjct: 350 LQAIAQKAIERKT-----GARGLRSIIEETMLDLMFEIPSQEDVTCVRITKKAVE 399



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 11/236 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L+    P+E+++ LD Y+IGQ  AKRA+A+A+ N ++R        D   +L   NIL++
Sbjct: 58  LSEVPKPKELLAILDSYVIGQDRAKRALAVAVYNHYKRISFTESQDDQDVDLQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +            +      
Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQI 237

Query: 175 DISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D  N   I GGA  GI ++    L  K++G G+  K          E++ ++  + 
Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKKIDDQSSYMQEIISEDIQKF 293


>gi|197117661|ref|YP_002138088.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           bemidjiensis Bem]
 gi|253701608|ref|YP_003022797.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter sp. M21]
 gi|238690892|sp|B5EI28|CLPX_GEOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491260|sp|C6E2S9|CLPX_GEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|197087021|gb|ACH38292.1| ATP-dependent chaperone and Clp protease specificity component ClpX
           [Geobacter bemidjiensis Bem]
 gi|251776458|gb|ACT19039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M21]
          Length = 417

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 64/336 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    +E A    D+    SN  + G    G   L++  ++++    
Sbjct: 80  QSRAKKVLAVAVYNHYKRVEAAVKPGDVEMQKSNILLLGPTGSGKTLLAQTLARILKVPF 139

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + ++ +       ++  +  GI+++DE DKI  +     I
Sbjct: 140 AMADATNLTEAG-YVGEDVENIILTLLQASDYDVEKAQK-GIIYIDEIDKIARKSDSPSI 197

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF       
Sbjct: 198 TRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILFICGGAFPGLDSII 257

Query: 305 -------------HVSR--------------PADLL-----PEIQGRFPVRVHLKSLNKS 332
                         V +              P DLL     PE  GR P+   L  L++ 
Sbjct: 258 QQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGFIPEFVGRLPMLASLSELDEE 317

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL + ++ LI QY++L   E + L FT+ S+ A+A  A+   +     GAR L+++
Sbjct: 318 AMVQILKEPKNALIKQYQKLFDMEHVKLKFTDGSLVAIAREALKRKT-----GARGLRSI 372

Query: 393 MERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +E  + DI +        K VVI+ E +        
Sbjct: 373 LENAMLDIMYEIPSQSMVKEVVINEEVIYSKEKPII 408



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ  AK+ +A+A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 65  KPQEIKEVLDEYVIGQSRAKKVLAVAVYNHYKRVEAAVKPGDVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V ++++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQASDYDVEKAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+  + +              +   +K    L     + L+
Sbjct: 245 ICGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLL 293


>gi|191638334|ref|YP_001987500.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           casei BL23]
 gi|227535178|ref|ZP_03965227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631581|ref|ZP_04674612.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301066387|ref|YP_003788410.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           casei str. Zhang]
 gi|190712636|emb|CAQ66642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei BL23]
 gi|227187223|gb|EEI67290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239526046|gb|EEQ65047.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300438794|gb|ADK18560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei str. Zhang]
 gi|327382362|gb|AEA53838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei LC2W]
 gi|327385562|gb|AEA57036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           casei BD-II]
          Length = 416

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 59/316 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  ++       DT    SN  + G    G   L++  +K++          ++ +    
Sbjct: 94  KRVNQMQTATKDDTELQKSNIALIGPTGSGKTFLAQTLAKILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + L+ +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENILLKLLQNADYDVERAEK-GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF----HVSR------------- 308
            ++EG+  +            ++  I+T +ILFI  GAF    ++ +             
Sbjct: 212 KILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTD 271

Query: 309 ----------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL     +PE  GR P+   L+ LN+ D   ILT+ ++ L+ 
Sbjct: 272 SNEQVDPDKSLMQQIIPEDLMQFGIIPEFIGRIPILAALEKLNEDDLVRILTEPKNALVK 331

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY++L+  +   L+FT +++ A+A  A+     V D GAR L+++ME +++D  F     
Sbjct: 332 QYQKLLSLDDTDLEFTPNALKAIAHQAI-----VRDTGARGLRSIMEAIMQDTMFDLPSR 386

Query: 408 QE-KTVVIDAEYVRLH 422
            +   VV+    V   
Sbjct: 387 SDVDKVVVTKSAVEGK 402



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
            P EI+  L+ Y+IGQ  AK+A+++A+ N ++R    Q       EL   NI L+GPTG 
Sbjct: 63  KPVEIMKTLNEYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + +     
Sbjct: 123 GKTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAEKGIVYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +          +      D +N 
Sbjct: 183 DEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNI 242

Query: 180 -DIPGGASVGILNL 192
             I GGA  GI N+
Sbjct: 243 LFIVGGAFDGIENI 256


>gi|154494363|ref|ZP_02033683.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC
           43184]
 gi|154085807|gb|EDN84852.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC
           43184]
          Length = 390

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/330 (25%), Positives = 135/330 (40%), Gaps = 71/330 (21%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ ++     D EI+          SN  + G    G   L+   +K++        
Sbjct: 70  NHYKRLIQKVTSDDVEIE---------KSNIIMVGATGTGKTLLARTIAKLLHVPFAIVD 120

Query: 209 RMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264
              + +        ES   RL+       ++ Q     GIVF+DE DKI  +     I  
Sbjct: 121 ATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR----GIVFIDEIDKIARKSDNPSITR 176

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------- 305
            VS EGVQ+ LL L+EGS V+            K  +++T +ILF+  GAF         
Sbjct: 177 DVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILFVCGGAFDGIEKKIAQ 236

Query: 306 ------------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
                                           +   L+PEI GR P+  +L  L++S  R
Sbjct: 237 RLNTRVVGYAANENTAQVDRNNLLKYITPTDLKSFGLIPEIIGRLPILTYLNPLDRSTLR 296

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++++I QY +L   + I L F ED  + + D A+        +GAR L++++E 
Sbjct: 297 NILTEPKNSIIKQYIKLFAMDDIELTFDEDVFEFIVDKALEFK-----LGARGLRSIVEA 351

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           V+ D  +S     EKT+ +  EY +     
Sbjct: 352 VMMDAMYSMPSANEKTLHVTLEYAKEKFEK 381



 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P +I + LD+Y+IGQ DAKR +++A+ N ++R        D E+   NI++VG TG GK
Sbjct: 42  KPEDIKTFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSDDVEIEKSNIIMVGATGTGK 101

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R +A+L   PF  V+ T  TE GYVG ++E I+  L+  A   V  ++R     DE
Sbjct: 102 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQRGIVFIDE 161

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          E    + D  N   
Sbjct: 162 IDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAVDTKNILF 221

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 222 VCGGAFDGIE 231


>gi|313893233|ref|ZP_07826810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313442586|gb|EFR61001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 417

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+        N    G    G   L++  +K++          S+
Sbjct: 90  NHYKRLQTDNVVDDVELQKA-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKIIQAADYDIARAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDGMDRVITKRTAKKT 262

Query: 305 -------------HVSR------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                        +VS       P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 263 LGFGADVQRKEERNVSAILKDVVPEDLLKFGLIPEFIGRLPVMVTLDQLDRDALIQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L FTED+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 323 PKNALTKQYEKILSLDGVELTFTEDALEEIADEALQRKT-----GARGLRAIIEKVMKRV 377

Query: 401 SFSASDLQEKT-VVIDAEYVRLHIGDFPSET 430
            F    + E T  +++ E V           
Sbjct: 378 MFEVPSMPEVTKCIVNRESVLSTGEPILKNE 408



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR+I + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPRDIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  + R     DE
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILF 241

Query: 182 PGGASVGILN 191
             G +   ++
Sbjct: 242 ICGGAFDGMD 251


>gi|169334563|ref|ZP_02861756.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259280|gb|EDS73246.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM
           17244]
          Length = 420

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 131/305 (42%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+   ++++          ++ +    +  D  + L+ +      
Sbjct: 123 SNILLTGPTGSGKTLLASTLARILKVPFAIADATALTEAG-YVGEDVENILLRLIQAADY 181

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
           ++++ +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ +         
Sbjct: 182 NVELAQK-GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTANVPPQGGRKH 240

Query: 288 ----YGSINTDHILFIASGAFH----------------------------------VSRP 309
               +  I+T  ILFI  GAF                                   +++P
Sbjct: 241 PHQDFIQIDTKDILFICGGAFDGLDEVVKKRLGTHSMGFGNDITGVKDKSTDDLFKLAQP 300

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE+ GR P+   LK L++     ILT  ++ LI QYK L+  + + L F +
Sbjct: 301 QDFVKYGLIPELVGRLPISASLKKLDEKALVNILTKPKNALIKQYKYLLSLDDVDLHFDK 360

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423
           ++++ +A   V   +     GAR L++++E ++ D+ + A   ++ K + +  E V+   
Sbjct: 361 EAVNLIAKETVKRET-----GARGLRSILEDIMLDVMYEAPSREDVKELTVTKEMVKEAF 415

Query: 424 GDFPS 428
                
Sbjct: 416 DKKVQ 420



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
            P +I   LD Y+IGQ DAK+ +A+A+ N ++R  +  +  D     EL   NILL GPT
Sbjct: 72  KPNKIKELLDEYVIGQDDAKKTLAVAVYNHYKRINVAENSDDKDSDVELQKSNILLTGPT 131

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT ++  LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  +++   
Sbjct: 132 GSGKTLLASTLARILKVPFAIADATALTEAGYVGEDVENILLRLIQAADYNVELAQKGII 191

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++      +                 D  
Sbjct: 192 YIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTANVPPQGGRKHPHQDFIQIDTK 251

Query: 178 NFDIPGGASVGILN 191
           +     G +   L+
Sbjct: 252 DILFICGGAFDGLD 265


>gi|332519947|ref|ZP_08396411.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044506|gb|EGI80700.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix
           algicola 5H-3-7-4]
          Length = 410

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 142/369 (38%), Gaps = 66/369 (17%)

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
               + +         +Q     +E I+     K   S       K+L     +D   DI
Sbjct: 47  QTDNSELSAELMLRKPQQIKAFLDEYIIGQEHTKKVMSVAVYNHYKRLLQQPTND---DI 103

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+  +     N  + G    G   +++  SK++           + +    +  D    L
Sbjct: 104 EIQKS-----NIIMVGETGTGKTLMAKTISKMLNVPLSIVDATVLTEAG-YVGEDVESIL 157

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
             +      +++  E  GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+
Sbjct: 158 TRLLQAADYNLEKAEK-GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVN 216

Query: 286 T-----------KYGSINTDHILFIASGAFH----------------------------- 305
                       K+  +NT++ILFIA GAF                              
Sbjct: 217 VPPKGGRKHPDQKFIEVNTENILFIAGGAFDGIERVISKRLNMQALGYSAAMSEDTVDKN 276

Query: 306 ---------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                      +   L+PEI GR PV  H+  L+ +  R ILT+ ++ +I QYK+L   +
Sbjct: 277 NILQYIIPKDLKDFGLIPEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFSMD 336

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I L  T+ +++ +   A+        +GAR L+++ E +L D  F       K + +  
Sbjct: 337 EIELSITDGALEYIVGKAIEYK-----LGARGLRSLCEEILTDAMFELPGSDTKKLSVTK 391

Query: 417 EYVRLHIGD 425
            Y    +  
Sbjct: 392 AYAEQKLSK 400



 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P++I + LD YIIGQ+  K+ +++A+ N ++R  Q P +   E+   NI++VG TG GK
Sbjct: 61  KPQQIKAFLDEYIIGQEHTKKVMSVAVYNHYKRLLQQPTNDDIEIQKSNIIMVGETGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ ++++   P   V+ T  TE GYVG +VE I+  L+  A   + ++ +     DE
Sbjct: 121 TLMAKTISKMLNVPLSIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAEKGIVFIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          +      +  N   
Sbjct: 181 IDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILF 240

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 241 IAGGAFDGIE 250


>gi|269798317|ref|YP_003312217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294792181|ref|ZP_06757329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
 gi|294794046|ref|ZP_06759183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|269094946|gb|ACZ24937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula DSM 2008]
 gi|294455616|gb|EFG23988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 3_1_44]
 gi|294457411|gb|EFG25773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           sp. 6_1_27]
          Length = 417

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+        N    G    G   L++  +K++          S+
Sbjct: 90  NHYKRLQTDNVVDDVELQKA-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKIIQAADYDIARAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDGMDKVITKRTAKKT 262

Query: 305 -------------HVSR------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                        +VS       P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 263 LGFGADVQRKEERNVSAILKDVVPEDLLKFGLIPEFIGRLPVMVTLDQLDRDALIQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L FTED+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 323 PKNALTKQYEKILSLDGVELTFTEDALEEIADEALQRKT-----GARGLRAIIEKVMKRV 377

Query: 401 SFSASDLQEKT-VVIDAEYVRLHIGDFPSET 430
            F    + E T  +++ E V           
Sbjct: 378 MFEVPSMPEVTKCIVNRESVLSTGEPILKNE 408



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  + R     DE
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILF 241

Query: 182 PGGASVGILN 191
             G +   ++
Sbjct: 242 ICGGAFDGMD 251


>gi|78066692|ref|YP_369461.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383]
 gi|107028899|ref|YP_625994.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116689943|ref|YP_835566.1| ATP-dependent protease ATP-binding subunit [Burkholderia
           cenocepacia HI2424]
 gi|170733281|ref|YP_001765228.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|206560358|ref|YP_002231122.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           cenocepacia J2315]
 gi|122977698|sp|Q1BH84|CLPX_BURCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123756153|sp|Q39FE9|CLPX_BURS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214761|sp|A0K846|CLPX_BURCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688580|sp|B1JTU9|CLPX_BURCC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693098|sp|B4EBM2|CLPX_BURCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77967437|gb|ABB08817.1| ClpX, ATPase regulatory subunit [Burkholderia sp. 383]
 gi|105898063|gb|ABF81021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia AU 1054]
 gi|116648032|gb|ABK08673.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia HI2424]
 gi|169816523|gb|ACA91106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           cenocepacia MC0-3]
 gi|198036399|emb|CAR52295.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           cenocepacia J2315]
 gi|325518992|gb|EGC98515.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia sp.
           TJI49]
          Length = 423

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                      + P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 378 QALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLI 296


>gi|70699876|gb|AAZ06845.1| ClpX [Microbacterium arborescens]
          Length = 422

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 65/336 (19%)

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           AL         R      L+  E    +++I         SN  + G    G   L++  
Sbjct: 86  ALSVAVYNHYKRVRAHSTLQPAEQRADDVEI-------AKSNILLLGPTGCGKTYLAQTL 138

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
           +K +          ++ +    +  D  + L+ +       ++  E  GI+++DE DKI 
Sbjct: 139 AKRLNVPFAVADATALTEAG-YVGEDVENILLKLLQAADFDVKRAET-GIIYIDEVDKIA 196

Query: 257 ARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA 303
            +     I   VS EGVQ+ LL ++EG+  S            ++  I+T ++LFI +GA
Sbjct: 197 RKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVAGA 256

Query: 304 F--------------------------------HVSRPADL-----LPEIQGRFPVRVHL 326
           F                                    P DL     +PE  GR PV   +
Sbjct: 257 FAGLEEIISSRVGKHGVGFGAPLQEKDKELDLFREVEPEDLHKFGLIPEFIGRLPVVTSV 316

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
             L++     ILT  ++  + QY+ + + +G+ L+F +D++ A+AD+AV   +     GA
Sbjct: 317 SPLDQKALIEILTGPKNAFVKQYQRMFELDGVELEFEDDALRAIADLAVARKT-----GA 371

Query: 387 RRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           R L+ ++E VL  I F      +   V++    V  
Sbjct: 372 RGLRAILEDVLGPIMFEIPSADDVDKVIVTRAAVDD 407



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 14/188 (7%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRD---ELMPKN 55
           F+   PREI S L+ Y++GQ  AKRA+++A+ N ++R +      PA+ R    E+   N
Sbjct: 61  FDLPKPREIFSFLEEYVVGQDPAKRALSVAVYNHYKRVRAHSTLQPAEQRADDVEIAKSN 120

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 121 ILLLGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAADFDVK 180

Query: 116 ESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            +       DEV + A       I   + G+       ++    +               
Sbjct: 181 RAETGIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 240

Query: 171 DTSSDISN 178
               D +N
Sbjct: 241 FIQIDTTN 248


>gi|115374874|ref|ZP_01462147.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368092|gb|EAU67054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 400

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 131/324 (40%), Gaps = 60/324 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
                  E  +++ D     SN  + G    G   L++  ++++           + +  
Sbjct: 69  HNHYKRIESKVQMDDVELQKSNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG 128

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 129 -YVGEDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQA 186

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            ++  ++T +ILFI  GAF                   
Sbjct: 187 LLKIIEGTIANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLEQVIERRLGGRSLGFG 246

Query: 305 ---------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DLL     PE  GR P+   L+ L++     IL+  ++ 
Sbjct: 247 ADIQSKKQRNLTELLKHVEPEDLLKFGMIPEFIGRLPIITALEELDEPALVNILSQPKNA 306

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY++L + +G+ L FT+ ++ A++  A+   +     GAR L++++E  + D+ +  
Sbjct: 307 LTKQYRKLFELDGVTLKFTDGALKAISTEAIRRKA-----GARGLRSILESAMLDVMYEL 361

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFP 427
              +  + V+I  E +        
Sbjct: 362 PSRKTAREVLISEEVILKKSEPVV 385



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI S LD Y++GQ  AK+ +++A+ N ++R +    + D EL   NILL+GPTG GKT
Sbjct: 43  PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 102

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+
Sbjct: 103 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEI 162

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +          +      D +N    
Sbjct: 163 DKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQVDTTNILFI 222

Query: 183 GGASVGILN 191
            G + G L 
Sbjct: 223 CGGAFGGLE 231


>gi|199598204|ref|ZP_03211626.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|229552142|ref|ZP_04440867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus LMS2-1]
 gi|258508347|ref|YP_003171098.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           rhamnosus GG]
 gi|258539556|ref|YP_003174055.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           rhamnosus Lc 705]
 gi|199590965|gb|EDY99049.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           HN001]
 gi|229314444|gb|EEN80417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus LMS2-1]
 gi|257148274|emb|CAR87247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus GG]
 gi|257151232|emb|CAR90204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           rhamnosus Lc 705]
 gi|259649661|dbj|BAI41823.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus
           GG]
          Length = 416

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 59/316 (18%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           +  ++       DT    SN  + G    G   L++  +K++          ++ +    
Sbjct: 94  KRVNQMQTATKDDTELQKSNIALIGPTGSGKTFLAQTLAKILNVPFAIADATTLTEAG-Y 152

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + L+ +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 153 VGEDVENILLKLLQNADYDVERAEK-GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALL 211

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF----HVSR------------- 308
            ++EG+  +            ++  I+T +ILFI  GAF    ++ +             
Sbjct: 212 KILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTD 271

Query: 309 ----------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL     +PE  GR P+   L+ LN+SD   ILT+ ++ L+ 
Sbjct: 272 STNQVDPDKSLMQQIIPEDLMQFGIIPEFIGRIPILAALEKLNESDLVRILTEPKNALVK 331

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY++L+  +   L+FT +++ A+A  A+     V D GAR L+++ME +++D  F     
Sbjct: 332 QYQKLLSLDDTDLEFTPNALKAIAHQAI-----VRDTGARGLRSIMEAIMQDTMFDLPSR 386

Query: 408 QE-KTVVIDAEYVRLH 422
            +   VV+    V   
Sbjct: 387 SDVDKVVVTKSAVEGK 402



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 9/194 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64
            P EI+  L+ Y+IGQ  AK+A+++A+ N ++R    Q       EL   NI L+GPTG 
Sbjct: 63  KPIEIMKSLNDYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + +     
Sbjct: 123 GKTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAEKGIVYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +          +      D +N 
Sbjct: 183 DEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNI 242

Query: 180 -DIPGGASVGILNL 192
             I GGA  GI N+
Sbjct: 243 LFIVGGAFDGIENI 256


>gi|256787755|ref|ZP_05526186.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289771642|ref|ZP_06531020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
 gi|289701841|gb|EFD69270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           lividans TK24]
          Length = 428

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGAQGREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GAQIRSKREIESKDQFEQVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF  ++++A+AD A+   +     GAR L+ +ME VL+ + + 
Sbjct: 333 ALVKQYERLFELDGVELDFEREALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ V  ++       D
Sbjct: 388 VPSRKDVARVVITADVVLSNVNPTLIPRD 416



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|227504042|ref|ZP_03934091.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199372|gb|EEI79420.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 431

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 133/313 (42%), Gaps = 60/313 (19%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             +   +E  +     SN  + G    G   L++  ++++          S+ +    + 
Sbjct: 109 EGRRKKVEDENVEIAKSNILLLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAG-YVG 167

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 168 EDVENILLKLLQAADFDVERAQ-RGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKI 226

Query: 279 VEGSSV-----------STKYGSINTDHILFIASGAF----------------------- 304
           +EG+             + ++  ++T +ILFI +GAF                       
Sbjct: 227 LEGTVAAIPPQGGRKHPNQEFIQLDTSNILFIVAGAFAGLDKVIAERVGKKGVGFGAKLE 286

Query: 305 -----------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                         RP DL     +PE  GR P+   + +L++     +L + +++L+ Q
Sbjct: 287 TADEREKLDLFSEVRPEDLVKFGLIPEFIGRLPIVATVDNLDRESLVKVLVEPKNSLVKQ 346

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           Y+ L + +G  L F + ++ A+A++A+   +     GAR L+ +ME +L  I +   D +
Sbjct: 347 YQRLFEMDGAELVFEDGALGAIAELALERKT-----GARGLRAIMEELLVPIMYELPDRE 401

Query: 409 EKT-VVIDAEYVR 420
           + T V I    V+
Sbjct: 402 DITAVHITEACVK 414



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 19/239 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKNI 56
           P EI S LD+Y+IGQ  AKR +A+A+ N ++R ++              D   E+   NI
Sbjct: 68  PSEISSFLDKYVIGQDQAKRVLAVAVYNHYKRIKVEETAGLEGRRKKVEDENVEIAKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 128 LLLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           ++R     DEV + +  +    I   + G+       ++    +                
Sbjct: 188 AQRGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEF 247

Query: 172 TSSDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              D SN       +   L+  ++E   K       K      ++          + L+
Sbjct: 248 IQLDTSNILFIVAGAFAGLDKVIAERVGKKGVGFGAKLETADEREKLDLFSEVRPEDLV 306


>gi|332653035|ref|ZP_08418780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ruminococcaceae bacterium D16]
 gi|332518181|gb|EGJ47784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Ruminococcaceae bacterium D16]
          Length = 438

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 60/298 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G    ++  ++V+          ++ +    +  D  + L+ +      
Sbjct: 112 SNILLMGPTGCGKTLFAQTLARVLKVPFAIADATTLTEAG-YVGDDVENILLRLVQAADY 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I++ E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DIELAE-RGIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  I+T +ILFI  GAF                                     +P
Sbjct: 230 PHQEFIQIDTKNILFICGGAFDGIDKIIESRLDKRSLGFGAEIQSKKERNVGELMKEIQP 289

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE+ GR P+   L+SL++     ILT+ ++ L+ QY++LM+ + + L++T 
Sbjct: 290 QDLLKFGIIPELVGRMPIITTLESLDRDQMMQILTEPKNALVKQYQKLMEYDDVELEYTH 349

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRL 421
           D+++A+AD AV        IGAR L+ ++E V+  + +    D     V I+A  V+ 
Sbjct: 350 DALEAVADRAVERG-----IGARGLRAILEEVMTQVMYDVPSDPTIAKVTINAACVKD 402



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI + LD+YIIGQ+ AK A+++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 66  TPREIHAVLDQYIIGQEKAKVALSVAVYNHYKRIYFGGAEDVELQKSNILLMGPTGCGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
             ++ LAR+   PF   + T  TE GYVG +VE I+  LV  A   +  + R     DE+
Sbjct: 126 LFAQTLARVLKVPFAIADATTLTEAGYVGDDVENILLRLVQAADYDIELAERGIIYIDEM 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +                 D  N    
Sbjct: 186 DKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQIDTKNILFI 245

Query: 183 GGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            G +   ++       +  S   G+  + K   +V +   E+   +  + 
Sbjct: 246 CGGAFDGIDKIIESRLDKRSLGFGAEIQSKKERNVGELMKEIQPQDLLKF 295


>gi|114777029|ref|ZP_01452049.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114552550|gb|EAU55010.1| ATP-dependent protease ATP-binding subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 423

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 140/325 (43%), Gaps = 69/325 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E  D EI           SN  + G    G   L++  +KV           
Sbjct: 96  HYKRIAHNEKGDVEI---------SKSNVLLLGPTGCGKTLLAQTLAKVFDVPFVMADAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + ++ +       +   +  GIV++DE DK+  +  G  I   VS 
Sbjct: 147 TLTEAG-YVGEDVENIILKLLQAADYDVDKAQ-RGIVYIDEVDKLSRKAEGPSITRDVSG 204

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL L+EG+  +            ++  ++T +ILF+  GAF             
Sbjct: 205 EGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTTNILFVLGGAFAGLEKMIESKGKQ 264

Query: 305 ---------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL+     PE+ GR P    L +L+K+    IL
Sbjct: 265 RSIGFGAKVSSEDEKDIGEILSHVEPEDLIKFGLIPELVGRLPAVATLGNLDKAALLRIL 324

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY+ LM+ +G+ L F++D+++A+A+ A+   +     GAR L+++ME V+ 
Sbjct: 325 KEPKNALIKQYQALMQYDGVELSFSDDALEAIAEKALARKT-----GARGLRSIMESVML 379

Query: 399 DISFSASDLQE-KTVVIDAEYVRLH 422
           D+ +    + + +  V++A+ V   
Sbjct: 380 DVMYDIPGMPDVEQCVVNADAVEGR 404



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P EI + LD Y+IGQ+  KR +A+A+ N ++R         E+   N+LL+GPTG GKT
Sbjct: 67  KPAEIKAYLDDYVIGQEGPKRLLAVAVYNHYKRIAHNEKGDVEISKSNVLLLGPTGCGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA++   PF+  + T  TE GYVG +VE II  L+  A   V +++R     DEV
Sbjct: 127 LLAQTLAKVFDVPFVMADATTLTEAGYVGEDVENIILKLLQAADYDVDKAQRGIVYIDEV 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + +       I   + G+       ++    +            +      D +N   +
Sbjct: 187 DKLSRKAEGPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTTNILFV 246

Query: 182 PGGASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLI 228
            GGA  G+  + E   K    G   K      +     L   E + LI
Sbjct: 247 LGGAFAGLEKMIESKGKQRSIGFGAKVSSEDEKDIGEILSHVEPEDLI 294


>gi|222055724|ref|YP_002538086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
 gi|254763849|sp|B9M0Y2|CLPX_GEOSF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|221565013|gb|ACM20985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           FRC-32]
          Length = 417

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 64/336 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    IE      ++    SN  + G    G   L++  ++++    
Sbjct: 80  QKQAKKVLAVAVYNHYKRIEAMTKPGEVEMQKSNILLLGPTGSGKTLLAQTLARILKVPF 139

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + ++++       ++  +  GI+++DE DKI  +     I
Sbjct: 140 AMADATNLTEAG-YVGEDVENIILNLLQAADYDVERAQK-GIIYIDEIDKIARKSDSPSI 197

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF       
Sbjct: 198 TRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILFICGGAFAGLENII 257

Query: 305 -------------HVSR--------------PADL-----LPEIQGRFPVRVHLKSLNKS 332
                         V +              P DL     +PE  GR PV   L  L++ 
Sbjct: 258 QQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLLKFGFIPEFVGRLPVLASLTELDEE 317

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL + ++ L+ QY++L   E + L FT+ S+ A+A  A+   +     GAR L+++
Sbjct: 318 AMVQILKEPKNALVKQYQKLFDMEHVKLKFTDGSLVAIAREALKRKT-----GARGLRSI 372

Query: 393 MERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +E  + DI +        K VVI  + +        
Sbjct: 373 LENAMLDIMYEIPSQTMVKEVVISEDVIYNKEKPII 408



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ+ AK+ +A+A+ N ++R + +      E+   NILL+GPTG GK
Sbjct: 65  KPLEIKDVLDEYVIGQKQAKKVLAVAVYNHYKRIEAMTKPGEVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +              +   +K    L+    + L+
Sbjct: 245 ICGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLL 293


>gi|282850556|ref|ZP_06259935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
 gi|282580049|gb|EFB85453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella
           parvula ATCC 17745]
          Length = 417

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 137/331 (41%), Gaps = 65/331 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  +   D+E+        N    G    G   L++  +K++          S+
Sbjct: 90  NHYKRLQTDNVVDDVELQKA-----NVLFIGPTGSGKTLLAQTLAKMLEVPFAIADATSL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKIIQAADYDIARAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  SV  + G          I+T +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILFICGGAFDSMDKVITKRTAKKT 262

Query: 306 ------VSR--------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                 V R              P DL     +PE  GR PV V L  L++     ILT 
Sbjct: 263 LGFGADVQRKEERNISAILKDVVPEDLLKFGLIPEFIGRLPVMVTLDQLDRDALIQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY++++  +G+ L FTED+++ +AD A+   +     GAR L+ ++E+V++ +
Sbjct: 323 PKNALTKQYEKILSLDGVELTFTEDALEEIADEALQRKT-----GARGLRAIIEKVMKRV 377

Query: 401 SFSASDLQEKT-VVIDAEYVRLHIGDFPSET 430
            F    + E T  +++ E V           
Sbjct: 378 MFEVPSMPEVTKCIVNRESVLSTGEPILKNE 408



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q    + D EL   N+L +GPTG GK
Sbjct: 62  TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  + R     DE
Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQIDTTNILF 241

Query: 182 PGGASVGILN 191
             G +   ++
Sbjct: 242 ICGGAFDSMD 251


>gi|313894820|ref|ZP_07828380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
 gi|312976501|gb|EFR41956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           sp. oral taxon 137 str. F0430]
          Length = 421

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS--VSTKYG--- 289
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G   
Sbjct: 170 DIEKAQ-RGIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKH 228

Query: 290 ------SINTDHILFIASGAF--------------------------------HVSR--P 309
                  I+T +ILFI  GAF                                 +S+  P
Sbjct: 229 PQQELLQIDTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L SL+++    ILT+ ++ L+ Q++ L+  +G+ L F +
Sbjct: 289 EDLMKNGLIPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQ 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++  +A  A+   +     GAR L++++E ++ ++ +    +Q  T   +  E V  H 
Sbjct: 349 DALHLIAKEALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTACQVTKEVVANHS 403

Query: 424 GDFPS 428
               +
Sbjct: 404 DPILT 408



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVG 65
            P+EI   LD+Y+IGQ +AK+++++A+ N ++R       +   EL   NIL++GPTG G
Sbjct: 63  KPKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYVD 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++                 +      D +N  
Sbjct: 183 EIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
            I GGA  GI  + E          G+  + K R+SV +   +++ ++  +
Sbjct: 243 FICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMK 293


>gi|330718624|ref|ZP_08313224.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc fallax
           KCTC 3537]
          Length = 374

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++  D     SN  + G    G   L++  ++++          ++ +    +  D  + 
Sbjct: 61  VKTTDVELQKSNIALLGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENI 119

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL L+EG++ 
Sbjct: 120 ILKLLQAANFDIESAE-RGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTTA 178

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           S            +   +NT +ILFI  GAF                             
Sbjct: 179 SVPPQGGRKHPQQELIQVNTTNILFIVGGAFAGIDTLIKERLGERVIGFGMDANRTDEFL 238

Query: 305 ------HVSRPA----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                 HV+        L+PE  GR P+   L  L   D   ILT+ ++ +I QY+ L+ 
Sbjct: 239 SGNILRHVASEDLTKFGLIPEFIGRLPIITVLDELKIDDLVRILTEPKNAVIKQYQALLG 298

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            + + L+F  +++ A+A +A++  +     GAR L++++E+V++DI +     ++   V+
Sbjct: 299 FDDVDLEFQPEALQAMASLAIDRKT-----GARGLRSIIEKVMKDIMYDIPSREDVAKVI 353

Query: 414 IDAEYVRL 421
           I    V  
Sbjct: 354 ITKGTVED 361



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P +IV++L+ Y+IGQ +AK+ +A+A+ N ++R           EL   NI L+GPTG G
Sbjct: 23  TPHDIVAKLNDYVIGQDEAKKTLAVAVYNHYKRINESLVKTTDVELQKSNIALLGPTGSG 82

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   +  + R     D
Sbjct: 83  KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAANFDIESAERGIIYID 142

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++                 +      + +N  
Sbjct: 143 EIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTTASVPPQGGRKHPQQELIQVNTTNIL 202

Query: 181 IPGGASVGILN 191
              G +   ++
Sbjct: 203 FIVGGAFAGID 213


>gi|170727452|ref|YP_001761478.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella woodyi
           ATCC 51908]
 gi|238688691|sp|B1KLT6|CLPX_SHEWM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169812799|gb|ACA87383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           woodyi ATCC 51908]
          Length = 426

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 74/307 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++ +          ++ +              D++ + 
Sbjct: 112 GKSNILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEA--------GYVGEDVENII 163

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 164 QKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 223

Query: 287 -----------KYGSINTDHILFIASGAFH------------------------------ 305
                      ++  ++T  ILF+  GAF                               
Sbjct: 224 PPQGGRKHPQQEFLQVDTSKILFVCGGAFSGLEKVIEQRSHTGTGIGFGAQVKGEDDKAT 283

Query: 306 ------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL     +PE  GR PV   L  L+ +    IL++ ++ L  Q+  L +
Sbjct: 284 ISDTLMQVEPEDLVKYGLIPEFIGRLPVLATLAELDDAALIQILSEPKNALTKQFAALFE 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVV 413
            E + L+F ED++ A+A  A    +     GAR L++++E +L DI +          VV
Sbjct: 344 MEDVELEFREDALKAIALKAKTRKT-----GARGLRSIVEGILLDIMYDLPSTDNVAKVV 398

Query: 414 IDAEYVR 420
           ID   V+
Sbjct: 399 IDESVVK 405



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 67  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNAGPKDGVELGKSNILLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 127 TLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGG 228


>gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 417

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 76/331 (22%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR  +    + D++V  +     N  + G    G   L++  ++ +       +  
Sbjct: 98  HYKRLRYKQTHKSKDDVDVEKS-----NLLLVGPTGSGKTLLAQTMARFLD------VPF 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
           ++      ++ +      D+D++    +Q  +        GI+F+DE DKI  + +   I
Sbjct: 147 TIADA--TVLTEAGYVGEDVDSIIVRLLQAADYDVAKAERGIIFIDEIDKIARKTANPSI 204

Query: 265 --GVSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH------ 305
              VS EGVQ+ LL L+EG+  SV  K G          +NT +ILFI  GAF       
Sbjct: 205 TRDVSGEGVQQGLLKLLEGTVASVPPKGGRKHPEQPLVQVNTRNILFICGGAFETLDKII 264

Query: 306 ----------------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKS 332
                                          P DL+     PEI GR P+ V L+ L+++
Sbjct: 265 SQRVNQGGMGFGADIHTASENSLSELFKQLEPEDLIKFGLIPEIVGRLPIAVALEELDET 324

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               ILT  ++ L+ QYK L   + I L+F +D++  +    +   +     GAR L++V
Sbjct: 325 ALLNILTKPKNALVKQYKSLFAMDNIKLEFEDDALKEIVRETMTRKT-----GARGLRSV 379

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           MERVL+   F      EK   +  E V+  +
Sbjct: 380 MERVLQQAMFKMPGSGEKKFTVTVEMVKEGL 410



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDELMPKNILLVGPTGV 64
           P EI + LD ++IGQ  AK A+++A+ N ++R +      +    ++   N+LLVGPTG 
Sbjct: 70  PTEIKAHLDDFVIGQDRAKMALSVAVYNHYKRLRYKQTHKSKDDVDVEKSNLLLVGPTGS 129

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ +AR    PF   + T  TE GYVG +V+ II  L+  A   V ++ R     
Sbjct: 130 GKTLLAQTMARFLDVPFTIADATVLTEAGYVGEDVDSIIVRLLQAADYDVAKAERGIIFI 189

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A   A   I   + G+       ++    +            E      +  N 
Sbjct: 190 DEIDKIARKTANPSITRDVSGEGVQQGLLKLLEGTVASVPPKGGRKHPEQPLVQVNTRNI 249

Query: 180 DIPGGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
               G +   L+              G+        S+ + + +L  ++  + 
Sbjct: 250 LFICGGAFETLDKIISQRVNQGGMGFGADIHTASENSLSELFKQLEPEDLIKF 302


>gi|134295957|ref|YP_001119692.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
 gi|166214767|sp|A4JF04|CLPX_BURVG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|134139114|gb|ABO54857.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           vietnamiensis G4]
          Length = 423

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                      + P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGASVKSKQERDAGEVLRETEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 378 QALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGASVKSKQERDAGEVLRETEPEDLI 296


>gi|115351961|ref|YP_773800.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170702051|ref|ZP_02892967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171320791|ref|ZP_02909798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|172060887|ref|YP_001808539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
 gi|122322953|sp|Q0BEF7|CLPX_BURCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689158|sp|B1YRZ4|CLPX_BURA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|115281949|gb|ABI87466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria AMMD]
 gi|170133037|gb|EDT01449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria IOP40-10]
 gi|171093961|gb|EDT39075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MEX-5]
 gi|171993404|gb|ACB64323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ambifaria MC40-6]
          Length = 423

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                      + P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 378 QALLDVMYELPAMKGVSKVIIDENVIDGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLI 296


>gi|149369720|ref|ZP_01889572.1| ATP-dependent protease ATP-binding subunit [unidentified
           eubacterium SCB49]
 gi|149357147|gb|EDM45702.1| ATP-dependent protease ATP-binding subunit [unidentified
           eubacterium SCB49]
          Length = 423

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 158/369 (42%), Gaps = 75/369 (20%)

Query: 120 DEVREQASINAEERIL-----------DALVGKTATSNTREV-FRKKLRDGEISDKEIDI 167
           +EV ++ S  +EE +L           D ++G+  T     V      +       E DI
Sbjct: 57  EEVHKKGSAVSEELMLKKPKMIKTFLDDYVIGQDHTKKVMSVAVYNHYKRLLQPKTEDDI 116

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+  +     N  + G    G   +++  ++++           + +    +  D    L
Sbjct: 117 EIQKS-----NIIMVGQTGTGKTLVAKTIARMLNVPLAIVDATVLTEAG-YVGEDVESIL 170

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
             +       ++  +N GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+
Sbjct: 171 TRLLQAADYDLEKAQN-GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVN 229

Query: 286 T-----------KYGSINTDHILFIASGAF-----HVSR--------------------- 308
                       K+  +NT++ILFIA GAF     H+S+                     
Sbjct: 230 VPPKGGRKHPDQKFIEVNTENILFIAGGAFDGINRHISKRLNLQSVGFSATHKEEQLDKD 289

Query: 309 -------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PEI GR PV  ++  L+ +  R ILT+ ++ +I QYK+L + +
Sbjct: 290 HMLKYIIPKDLKDFGLIPEIIGRLPVLTYMNPLDNATLRAILTEPKNAIIKQYKKLFEMD 349

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I L  TE+ +D + + A+        +GAR L+++ E VL D  +       K + ++ 
Sbjct: 350 DIELIITEEGLDFIVEQAIEYK-----LGARGLRSLCEAVLTDAMYELPGTDVKQLSVNV 404

Query: 417 EYVRLHIGD 425
           EYV+  +  
Sbjct: 405 EYVKEKLNK 413



 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+ I + LD Y+IGQ   K+ +++A+ N ++R   P    D E+   NI++VG TG GK
Sbjct: 74  KPKMIKTFLDDYVIGQDHTKKVMSVAVYNHYKRLLQPKTEDDIEIQKSNIIMVGQTGTGK 133

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++      DE
Sbjct: 134 TLVAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDLEKAQNGIVFIDE 193

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          +      +  N   
Sbjct: 194 IDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILF 253

Query: 182 PGGASVGILN 191
             G +   +N
Sbjct: 254 IAGGAFDGIN 263


>gi|329116132|ref|ZP_08244849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parauberis NCFD 2020]
 gi|326906537|gb|EGE53451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           parauberis NCFD 2020]
          Length = 409

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 61/318 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +     +   + EV    S+I      G    G   L++  +K +          S+
Sbjct: 91  NHYKRISYKESRDEEEVELQKSNIMMI---GPTGSGKTFLAQTLAKSLNVPFAIADATSL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +      +++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENILLKLIQAADYNVERAE-RGIIYVDEIDKIAKKGENMSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S            +   I+T +ILFI  GAF               
Sbjct: 206 VQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQRLGEKI 265

Query: 305 ----HVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                 SR  D                  L+PE  GR PV   L+ L+  D   ILT+ +
Sbjct: 266 IGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQILTEPK 325

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L+ QY+ L+  +G+ L+F +++++A+A  A++ N+     GAR L++++E  + DI F
Sbjct: 326 NALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNT-----GARGLRSIIEETMLDIMF 380

Query: 403 SASDLQE-KTVVIDAEYV 419
                ++   V+I  E V
Sbjct: 381 DIPSQEDITKVIITKEAV 398



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 11/236 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLV 59
           LT    P+E++  L++Y++GQ  AKRA+A+A+ N ++R        +E   L   NI+++
Sbjct: 58  LTEVPKPKELLEALNQYVVGQDRAKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + R
Sbjct: 118 GPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A       I   + G+       ++    +                   
Sbjct: 178 GIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237

Query: 175 DISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D  N   I GGA  GI  +    L  K++G G+  +          E++ ++  + 
Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKF 293


>gi|257784420|ref|YP_003179637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           parvulum DSM 20469]
 gi|257472927|gb|ACV51046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           parvulum DSM 20469]
          Length = 432

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 65/316 (20%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + E  + + D+E+A +     N  + G    G   L++  ++ +          ++ +  
Sbjct: 115 NDEPQEGKEDVEIAKS-----NILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAG 169

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ + T     ++  +  GIV++DE DKI  +     I   VS EGVQ+ 
Sbjct: 170 -YVGEDVENILLKLITAADGDVERAQ-VGIVYIDEIDKIARKAENLSITRDVSGEGVQQA 227

Query: 275 LLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------- 304
           LL ++EG+  +            +   I+T +ILFI  GAF                   
Sbjct: 228 LLKILEGTVANVPPTGGRKHPQQELIHIDTTNILFICGGAFVGLDKIVADRIGKKGIGFN 287

Query: 305 -HVSR--------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
             V++              P DL     +PE+ GR PV    + L + D   ILTD ++ 
Sbjct: 288 SDVAKNVKEDESELIAKVMPQDLHKFGMIPELLGRIPVITSTRELGEEDLMSILTDPKNA 347

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L  QY+ + + EG+ L+FTEDS+  +A  A+   +     GAR L+ + E  L++I F  
Sbjct: 348 LTKQYRRMFELEGVDLEFTEDSLREIAKKALARGT-----GARGLRAICESTLQEIMFDL 402

Query: 405 S-DLQEKTVVIDAEYV 419
             DL    VV+  E V
Sbjct: 403 PSDLDITKVVVTPESV 418



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 17/229 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL------RDELMPKNILLVGP 61
           +P EI  EL +Y++GQ+DAKRA+++A+ N +RR     D         E+   NILL+GP
Sbjct: 78  TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPQEGKEDVEIAKSNILLLGP 137

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR--- 118
           TG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  ++   
Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAADGDVERAQVGI 197

Query: 119 --RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DE+ + A       I   + G+       ++    + +   +      +      D 
Sbjct: 198 VYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVANVPPTGGRKHPQQELIHIDT 257

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +N     G +   L+      K++     KK           +  DES+
Sbjct: 258 TNILFICGGAFVGLD------KIVADRIGKKGIGFNSDVAKNVKEDESE 300


>gi|308233829|ref|ZP_07664566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           vaginae DSM 15829]
 gi|328943801|ref|ZP_08241266.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae
           DSM 15829]
 gi|327491770|gb|EGF23544.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae
           DSM 15829]
          Length = 458

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 61/341 (17%)

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           ++ R V        E  ++  D +  +     SN  + G    G   L++  ++ +    
Sbjct: 110 NHYRRVMTNDASIDEDINRNDDAKPEEVELAKSNILLLGPTGTGKTLLAQTLARFLEVPF 169

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + L+ + T     +   E  GIV++DE DKI  +     I
Sbjct: 170 AIADATTLTEAG-YVGEDVENILLKLITAADGDVARAE-VGIVYIDEIDKIARKAENLSI 227

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG++ S            +   INT +ILFI  GAF       
Sbjct: 228 TRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHINTQNILFICGGAFVGLDKIV 287

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                          P DL     +PE  GR PV    K L + 
Sbjct: 288 ADRIGEKGIGFNAQLARKVDDNQDELMSKVMPQDLHKFGIIPEFIGRIPVITTTKELTED 347

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   IL + ++ ++ QYK + + EG+ L+F ++++  +A +A+  N+     GAR L+ +
Sbjct: 348 DLVKILIEPKNAIVKQYKRMFEIEGVELEFKDEALREIASLALKRNT-----GARGLRAI 402

Query: 393 MERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDF-PSETD 431
            E  L++  F    DL    VV+  E V         +E D
Sbjct: 403 CEATLQNTMFDLPSDLSIVKVVVTKEAVEGTEQPLRITEED 443



 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 19/210 (9%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           +KL    +P EI  EL +Y++GQ+ AKRA+++A+ N +RR        DE          
Sbjct: 75  LKLNNLPTPHEIYDELSQYVMGQEAAKRAMSVAVYNHYRRVMTNDASIDEDINRNDDAKP 134

Query: 51  ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106
               L   NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L
Sbjct: 135 EEVELAKSNILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKL 194

Query: 107 VDVAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS 161
           +  A   V  +       DE+ + A       I   + G+       ++           
Sbjct: 195 ITAADGDVARAEVGIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQ 254

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILN 191
                        +  N     G +   L+
Sbjct: 255 GGRKHPSQELIHINTQNILFICGGAFVGLD 284


>gi|21221074|ref|NP_626853.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces
           coelicolor A3(2)]
 gi|23813896|sp|Q9F316|CLPX_STRCO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|10280517|emb|CAC09993.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces
           coelicolor A3(2)]
          Length = 428

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 139/329 (42%), Gaps = 65/329 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +G    +E  IE+A +     N  + G    G   L++  ++++          ++ + 
Sbjct: 100 ENGGAQGREDAIELAKS-----NILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEA 154

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS EGVQ+
Sbjct: 155 G-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQ 212

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------------ 304
            LL ++EG++ S            ++  I+T ++LFI  GAF                  
Sbjct: 213 ALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGF 272

Query: 305 ----------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PE  GR PV   + +L++     IL +  +
Sbjct: 273 GAQIRSKREIESKDQFEQVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRN 332

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            L+ QY+ L + +G+ LDF   +++A+AD A+   +     GAR L+ +ME VL+ + + 
Sbjct: 333 ALVKQYERLFELDGVELDFERGALEAIADQAILRQT-----GARGLRAIMEEVLQGVMYE 387

Query: 404 ASDLQEK-TVVIDAEYVRLHIGDFPSETD 431
               ++   VVI A+ V  ++       D
Sbjct: 388 VPSRKDVARVVITADVVLSNVNPTLIPRD 416



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 33/245 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--- 117
           PTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++   
Sbjct: 123 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETG 182

Query: 118 -----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
                  D+V  ++              ++ +L  L G TA+           + G    
Sbjct: 183 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHP 234

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            +  I++  T+          G    I   +       G+  + K  +  +  + ++M +
Sbjct: 235 HQEFIQIDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPE 294

Query: 223 ESDRL 227
           +  + 
Sbjct: 295 DLVKF 299


>gi|85859381|ref|YP_461583.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophus
           aciditrophicus SB]
 gi|85722472|gb|ABC77415.1| ATP-dependent clp protease ATP-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 420

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 64/258 (24%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++ +    +Q  +      + GIV++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 159 DVENIILSLLQNADYDVDKASKGIVYIDEIDKIAKKSGNPSITRDVSGEGVQQALLKIIE 218

Query: 281 GSSVST-----------KYGSINTDHILFIASGAFH------------------------ 305
           G+  +            ++  ++T  ILFI  GAF+                        
Sbjct: 219 GTLANIPPKGGRKHPQQEFIQVDTTGILFICGGAFNDLPDIIMKRTGVNAMGFGADIKGK 278

Query: 306 ----------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                       +P DL     +PE  GR PV   L  L++ D   IL D + +++ QY 
Sbjct: 279 QDRKIGELLSEVQPEDLLKCGLIPEFVGRLPVIAPLSELDEDDLVKILVDPKDSIVKQYT 338

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
           +  + E + L FT+ ++ A+A +AV+  S     GAR L+ ++E  + DI +     Q+ 
Sbjct: 339 KAFELENVKLRFTDSALRAVAKLAVDRKS-----GARGLRAILENAMLDIMYDIPSRQDV 393

Query: 410 KTVVIDAEYVRLHIGDFP 427
           +  VI+ + V        
Sbjct: 394 RECVINEDVVLNRAQPIL 411



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           PR I   LD+Y++GQ+  K+ +++A+ N ++R    AD    E+   N+LL+GPTG GKT
Sbjct: 69  PRIIKEFLDQYVVGQERPKKVLSVAVYNHYKRLSAHADSDGVEMQKSNVLLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA+L   PF   + T  TE GYVG +VE II  L+  A   V ++ +     DE+
Sbjct: 129 LLAKTLAKLLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDVDKASKGIVYIDEI 188

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    L +          +      D +     
Sbjct: 189 DKIAKKSGNPSITRDVSGEGVQQALLKIIEGTLANIPPKGGRKHPQQEFIQVDTTGILFI 248

Query: 183 GGASVGILNLSELFS---KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            G +   L    +       MG G   K +   +K    L   + + L+    +     +
Sbjct: 249 CGGAFNDLPDIIMKRTGVNAMGFGADIKGKQD-RKIGELLSEVQPEDLLKCGLIPEFVGR 307

Query: 240 MVENYGIVFLDEFD--KI 255
           +     +  LDE D  KI
Sbjct: 308 LPVIAPLSELDEDDLVKI 325


>gi|322385235|ref|ZP_08058882.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270859|gb|EFX53772.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 409

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 107 VDVAINIVRESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEI 160
           V++A  I+RE   +EV  + + +   + +L+ L         A            +    
Sbjct: 39  VELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINF 98

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D   + +V    S+I      G    G   L++  ++ +          ++ +    + 
Sbjct: 99  HDSREEDDVELQKSNILMI---GPTGSGKTFLAQTLARSLNVPFAIADATALTEAG-YVG 154

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 155 EDVENILLKLLQAADFNIERAE-RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKI 213

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAFH---------------------- 305
           +EG+  S            +   ++T +ILFI  GAF                       
Sbjct: 214 IEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNK 273

Query: 306 ---------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            +   ++PE+ GR PV   L+ L   D   IL++  + L+ QY+
Sbjct: 274 AIDEGASYMQAIVADDIQKFGIIPELIGRLPVFAALEQLTVDDLVRILSEPRNALVKQYQ 333

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  + + L+F E+++ A+A  A+   +     GAR L++++E  + D+ F     +  
Sbjct: 334 TLLSYDDVELEFDEEALQAIARKAIERKT-----GARGLRSIIEETMMDVMFEVPSQENV 388

Query: 411 TVV-IDAEYVR 420
            +V I  E V 
Sbjct: 389 KLVRITKEAVD 399



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 8/197 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLV 59
           L+    P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R        +   EL   NIL++
Sbjct: 58  LSEVPKPQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R
Sbjct: 118 GPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +            +      
Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237

Query: 175 DISNFDIPGGASVGILN 191
           D  N     G +   + 
Sbjct: 238 DTKNILFIVGGAFDGIE 254


>gi|160871875|ref|ZP_02062007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
           grylli]
 gi|159120674|gb|EDP46012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella
           grylli]
          Length = 439

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 124/299 (41%), Gaps = 61/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V           ++ +    +  D  + L  +      
Sbjct: 122 SNVLLIGPTGSGKTLLAKTLARVFNLPFAIADATTLTEAG-YVGDDVENILQKLLQAANG 180

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKY------ 288
           SI+  +  GI+++DE DKI  R     I   VS EGVQ+ LL L+EG+  S         
Sbjct: 181 SIEKAQ-LGIIYIDEIDKISRRAENPSITRDVSGEGVQQGLLKLLEGTVASVPLQGGRKH 239

Query: 289 -----GSINTDHILFIASGAFH--------------VSRPAD------------------ 311
                  I+T +ILFI  G F               +   AD                  
Sbjct: 240 PNQETVQIDTTNILFICGGTFSGLEKIIRERTEKTGIGFSADVRSKKDKKSLTTLLSRLD 299

Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE+ GR PV   L+ L++S    IL + ++ LI QY +L K + + L+F 
Sbjct: 300 SEDLIKYGIIPELIGRLPVIATLEELDESMLIQILKEPKNALIKQYFKLFKMDNVDLEFR 359

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRL 421
           ED++  +A  A+   +     GAR L+ ++E VL D  +    +Q    +VI+A  V  
Sbjct: 360 EDALQMVARKALARKT-----GARGLRAILESVLLDTMYELPSMQNVNKIVIEASTVSK 413



 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 18/262 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR---------DELMPKNILL 58
            P EI    + ++IGQ+ AK+ +++A  N ++R +L    R          EL   N+LL
Sbjct: 67  KPSEIHEVFNEFVIGQEFAKKILSVAAYNHYKRLELIKKARLHPLNTKDDTELSKSNVLL 126

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I++ L+  A   + +++
Sbjct: 127 IGPTGSGKTLLAKTLARVFNLPFAIADATTLTEAGYVGDDVENILQKLLQAANGSIEKAQ 186

Query: 119 -----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 DE+ + +       I   + G+       ++    +    +             
Sbjct: 187 LGIIYIDEIDKISRRAENPSITRDVSGEGVQQGLLKLLEGTVASVPLQGGRKHPNQETVQ 246

Query: 174 SDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            D +N     G +   L   + E   K              +K    L+       +   
Sbjct: 247 IDTTNILFICGGTFSGLEKIIRERTEKTGIGFSADVRSKKDKKSLTTLLSRLDSEDLIKY 306

Query: 232 TVHRDSIQMVENYGIVFLDEFD 253
            +  + I  +    I  L+E D
Sbjct: 307 GIIPELIGRL--PVIATLEELD 326


>gi|254252157|ref|ZP_04945475.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
 gi|124894766|gb|EAY68646.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa
           AUO158]
          Length = 423

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVIID 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                      + P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 378 QALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIYED 415



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVIIDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLI 296


>gi|222524927|ref|YP_002569398.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus sp.
           Y-400-fl]
 gi|222448806|gb|ACM53072.1| Sigma 54 interacting domain protein [Chloroflexus sp. Y-400-fl]
          Length = 429

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      +  D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 100 NHYKRVRAGARIDDVEISKS-----NILLIGPTGSGKTLLAQTMARLLDVPFAIADATAL 154

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EG
Sbjct: 155 TEAG-YVGEDVENILLRLIQAADGDLERAQT-GIIYIDEIDKIARKADNPSITRDVSGEG 212

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG                +Y   +T ++LFI  GAF               
Sbjct: 213 VQQALLKILEGGVAHVPPLPGRKHPQQEYIPFDTTNVLFICGGAFEGITKIIAKRLRGKQ 272

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV V L+ L++     ILT+
Sbjct: 273 LIGFGSNPVNPVEEEGALLAQITPDDLMHFGFIPEFVGRLPVIVALEPLSREAMLRILTE 332

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + +I QY++L   +   L+FT DS++A+ D A+   +     GAR L++++E VL D+
Sbjct: 333 PRNAIIKQYQKLFALDHCELEFTPDSLEAIVDRAMAART-----GARALRSIVEEVLLDV 387

Query: 401 SFSASDLQ-EKTVVIDAEYVRLH 422
            F     +     ++ AE ++  
Sbjct: 388 MFELPSQEHIGRCIVTAEVIQGR 410



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++   LD+Y+IGQ  AK A+A+A+ N ++R +  A + D E+   NILL+GPTG GK
Sbjct: 72  TPRKLRERLDQYVIGQDRAKIALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ +ARL   PF   + T  TE GYVG +VE I+  L+  A   +  ++      DE
Sbjct: 132 TLLAQTMARLLDVPFAIADATALTEAGYVGEDVENILLRLIQAADGDLERAQTGIIYIDE 191

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FD 180
           + + A       I   + G+       ++    +            +      D +N   
Sbjct: 192 IDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPFDTTNVLF 251

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 252 ICGGAFEGITKI 263


>gi|167586933|ref|ZP_02379321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia
           ubonensis Bu]
          Length = 423

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 132/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 96  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 150

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 151 TEA--------GYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKSDNPSITR 202

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 203 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 262

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L+++  
Sbjct: 263 RTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 322

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 323 MKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVARKAIRRKT-----GARGLRSIIE 377

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 378 QALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIYED 415



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 68  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 188 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 247

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 248 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLI 296


>gi|218288289|ref|ZP_03492588.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241648|gb|EED08821.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 194

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 111/148 (75%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M      +PREIV  LDRYI+GQ+ AKRAVAIALRNR+RR +L  D++ E+ PKNIL++G
Sbjct: 1   MPSERELTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRAKLSPDMQAEVTPKNILMIG 60

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+    +
Sbjct: 61  PTGVGKTEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAE 120

Query: 121 EVREQASINAEERILDALVGKTATSNTR 148
            V+ +A   A +RI++ALV     +  R
Sbjct: 121 RVKSEAEARANDRIVEALVPDPGGAIAR 148


>gi|225378749|ref|ZP_03755970.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM
           16841]
 gi|225209408|gb|EEG91762.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM
           16841]
          Length = 425

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++V+          ++ +    +  D  + L+ +      
Sbjct: 115 SNILMLGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  + +GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 174 DIERAQ-HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAFHVSR----------------------------------P 309
              +   I+T +ILFI  GAF                                      P
Sbjct: 233 PQQELIPIDTTNILFICGGAFDGLEKIIETRLDQKSIGFNAEVHAKDEYNVGEVLKHVLP 292

Query: 310 AD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            D     L+PE  GR PV V L  L+K     IL + ++ L+ QYK+L + +G+ L+F +
Sbjct: 293 QDFVKFGLIPEFIGRVPVTVTLDMLDKDAMVRILCEPKNALVKQYKKLFELDGVNLEFDK 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           D+++A+ D A+   +     GAR L+ +ME V  D+ +    D       I  E V  ++
Sbjct: 353 DALEAIVDKALERKT-----GARGLRAIMEAVTLDLMYHIPSDESITRCEITKEDVEKNL 407

Query: 424 G 424
            
Sbjct: 408 A 408



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 6/193 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P E+ + LD Y+IGQ  AK+ +++A+ N ++R    +D   EL   NIL++GPTG GKT
Sbjct: 69  KPEEMKAFLDEYVIGQDKAKKVLSVAVYNHYKRIMAGSDSDVELQKSNILMLGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++      DE+
Sbjct: 129 LLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLIQAADYDIERAQHGIIYIDEI 188

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            +    +    I   + G+       ++    +            +      D +N   I
Sbjct: 189 DKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIPIDTTNILFI 248

Query: 182 PGGASVGILNLSE 194
            GGA  G+  + E
Sbjct: 249 CGGAFDGLEKIIE 261


>gi|148263973|ref|YP_001230679.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
 gi|189044135|sp|A5GFA1|CLPX_GEOUR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|146397473|gb|ABQ26106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter
           uraniireducens Rf4]
          Length = 417

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 147/368 (39%), Gaps = 67/368 (18%)

Query: 115 RESRRDEVREQASINAEERILD--ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            E+   +V++       + +LD   +    A            +  E   K  ++E+  +
Sbjct: 53  EEAMGPDVKKLPKPQEIKEVLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKS 112

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                N  + G    G   L++  ++++          ++ +    +  D  + ++++  
Sbjct: 113 -----NILLLGPTGSGKTLLAQTLARILKVPFAMADATNLTEAG-YVGEDVENIILNLLQ 166

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
                ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S     
Sbjct: 167 AADYDVERAQK-GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKG 225

Query: 287 -------KYGSINTDHILFIASGAF--------------------HVSR----------- 308
                  ++  ++T +ILF+  GAF                     V +           
Sbjct: 226 GRKHPQQEFLKVDTTNILFVCGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLI 285

Query: 309 ---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
              P DL     +PE  GR PV   L  L++     IL + ++ L+ QY++L + E + L
Sbjct: 286 GVTPEDLLKFGFIPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFEMEHVKL 345

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYV 419
            FT+ S+ A+A  A+   +     GAR L++++E  + DI +     +  K VVI  + +
Sbjct: 346 KFTDGSLVAIAKEALKRRT-----GARGLRSILENAMLDIMYEIPSQVMVKEVVISEDVI 400

Query: 420 RLHIGDFP 427
                   
Sbjct: 401 YNKEKPII 408



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ  AK+ +A+A+ N ++R + +      E+   NILL+GPTG GK
Sbjct: 65  KPQEIKEVLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II +L+  A   V  +++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKVDTTNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   + +              +   +K    L+    + L+
Sbjct: 245 VCGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLL 293


>gi|160878536|ref|YP_001557504.1| ATP-dependent protease ATP-binding subunit [Clostridium
           phytofermentans ISDg]
 gi|189082493|sp|A9KSX1|CLPX_CLOPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160427202|gb|ABX40765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           phytofermentans ISDg]
          Length = 433

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 126/312 (40%), Gaps = 63/312 (20%)

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E D++V    S+I      G    G   +++  +K++          ++ +    +  D 
Sbjct: 102 EKDLDVELQKSNILMI---GPTGSGKTYVAQTLAKILNVPFAIADATALTEAG-YVGEDV 157

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L+ +       I+  + YGI+++DE DKI  +     I   VS EGVQ+ LL ++EG
Sbjct: 158 ENILLKIIQAADYDIERAQ-YGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEG 216

Query: 282 SSVST-----------KYGSINTDHILFIASGAF-------------------------- 304
           S  S            ++  I+T +ILFI  GAF                          
Sbjct: 217 SVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLEKIVEARIGQKSIGFNAEIAHGQ 276

Query: 305 --------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                       P DL+     PE  GR PV   L  L++     ILT+ ++ +  QY++
Sbjct: 277 KENIGDLFRQVLPQDLIKFGMIPEFVGRVPVNTALDLLDEQALVRILTEPKNAITKQYRK 336

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEK 410
           L + +G+ L F ED++  +A  +    +     GAR L+ +ME V+ D  F    D    
Sbjct: 337 LFELDGVELVFEEDALKEIAKRSFERKT-----GARGLRAIMESVMMDSMFKVPTDTSVL 391

Query: 411 TVVIDAEYVRLH 422
             +I  E     
Sbjct: 392 KCIITKESAEGK 403



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 70/112 (62%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+EI   LD+Y+IGQ++AK+ +++++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 65  LKPKEIKEFLDQYVIGQEEAKKVLSVSVYNHYKRVLSEKDLDVELQKSNILMIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  ++
Sbjct: 125 TYVAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADYDIERAQ 176


>gi|289422715|ref|ZP_06424555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
 gi|289156894|gb|EFD05519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus anaerobius 653-L]
          Length = 422

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 66/345 (19%)

Query: 132 ERILDALVGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           E + D ++G++       V      +     +   D+EV  +     N  + G    G  
Sbjct: 70  EILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDVEVQKS-----NILLLGPTGSGKT 124

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L++  +K++          S+ +    +  D  + ++ +       ++  +  GI+++D
Sbjct: 125 LLAQTLAKILNVPFAIADATSLTEAG-YVGEDVENIILKLVQAADFDVERAQK-GIIYID 182

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  ++T +IL
Sbjct: 183 EIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPSGGRKHPHQEFLKVDTTNIL 242

Query: 298 FIASGA----------------------------------FHVSRPADL-----LPEIQG 318
           FI  GA                                  +    P DL     +PE  G
Sbjct: 243 FILGGAFDGIEKIVQKRGKEKSLGFGAKIESKNDMDIGKLYSQVVPDDLLKFGLIPEFIG 302

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   L  L++     ILT+ ++ L  QY +L + +   L+F ED++ A+A  A+   
Sbjct: 303 RVPVLATLDLLDEESLVKILTEPKNALTKQYAKLFEYDDAKLEFEEDALRAVAQKAIERK 362

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +     GAR L++++E  L D+ +    L+  + V+I  + +  +
Sbjct: 363 T-----GARGLRSIIEHALMDVMYEVPSLENVEKVIIKRDCIEEN 402



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 10/236 (4%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
            N   P+E++  L+ Y+IGQ  AK+A+++A+ N ++R        D E+   NILL+GPT
Sbjct: 60  MNLPKPKEMMEILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDVEVQKSNILLLGPT 119

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT +++ LA++   PF   + T  TE GYVG +VE II  LV  A   V  +++  +
Sbjct: 120 GSGKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIILKLVQAADFDVERAQKGII 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + I          S TR+V  + ++   +   E  +      S        
Sbjct: 180 Y-------IDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTV-ANVPPSGGRKHPHQ 231

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               V   N+  +         K   +   +K      + ES   +D+  ++   +
Sbjct: 232 EFLKVDTTNILFILGGAFDGIEKIVQKRGKEKSLGFGAKIESKNDMDIGKLYSQVV 287


>gi|311741279|ref|ZP_07715103.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303449|gb|EFQ79528.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 431

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 142/344 (41%), Gaps = 68/344 (19%)

Query: 132 ERILD-ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +R+L  A+          E    + R  +    E++I         SN  + G    G  
Sbjct: 86  KRVLSVAVYNHYKRIKAEESAALEARRKKAEGDEVEI-------SKSNILMLGPTGSGKT 138

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L++  ++++          S+ +    +  D  + L+ +       ++  +  GI+++D
Sbjct: 139 YLAQTLARLLDVPFAIADATSLTEAG-YVGEDVENILLKLLQAADFDVERAQ-RGIIYVD 196

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV-----------STKYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL ++EG+             + ++  ++T +IL
Sbjct: 197 EVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNIL 256

Query: 298 FIASGAF----------------------------------HVSRPADL-----LPEIQG 318
           FI +GAF                                     RP DL     +PE  G
Sbjct: 257 FIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGLIPEFIG 316

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   + +L++     +LT+ +++L+ QY  L + +   LD    ++DA+A++A+   
Sbjct: 317 RLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAELALERK 376

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +     GAR L+ +ME +L  + +   D ++  TV I  E V  
Sbjct: 377 T-----GARGLRAIMEELLVPVMYDLPDREDIATVHITRECVTE 415



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 12/123 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDELMPKNI 56
           P +I + LD+Y+IGQ  AKR +++A+ N ++R +                   E+   NI
Sbjct: 68  PSQISAFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGDEVEISKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187

Query: 117 SRR 119
           ++R
Sbjct: 188 AQR 190


>gi|255325487|ref|ZP_05366589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium tuberculostearicum SK141]
 gi|255297425|gb|EET76740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium tuberculostearicum SK141]
          Length = 431

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 68/344 (19%)

Query: 132 ERILD-ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +R+L  A+          E    + R  +    E++I         SN  + G    G  
Sbjct: 86  KRVLSVAVYNHYKRIKAEESAALEARRKKAEGDEVEI-------SKSNILMLGPTGSGKT 138

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            L++  ++++          S+ +    +  D  + L+ +       ++  +  GI+++D
Sbjct: 139 YLAQTLARLLDVPFAIADATSLTEAG-YVGEDVENILLKLLQAADFDVERAQ-RGIIYVD 196

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV-----------STKYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL ++EG+             + ++  ++T +IL
Sbjct: 197 EVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQLDTSNIL 256

Query: 298 FIASGAF----------------------------------HVSRPADL-----LPEIQG 318
           FI +GAF                                     RP DL     +PE  G
Sbjct: 257 FIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGLIPEFIG 316

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   + +L++     +LT+ +++L+ QY  L + +   LD    ++DA+A++A+   
Sbjct: 317 RLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAELALERK 376

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           +     GAR L+ +ME +L  + +   D ++  TV I +E V  
Sbjct: 377 T-----GARGLRAIMEELLVPVMYDLPDREDIATVHITSECVTE 415



 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 12/123 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDELMPKNI 56
           P +I + LD+Y+IGQ  AKR +++A+ N ++R +                   E+   NI
Sbjct: 68  PSQISAFLDKYVIGQDRAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGDEVEISKSNI 127

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           L++GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V  
Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187

Query: 117 SRR 119
           ++R
Sbjct: 188 AQR 190


>gi|260577470|ref|ZP_05845419.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2]
 gi|259020314|gb|EEW23661.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2]
          Length = 185

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/187 (54%), Positives = 138/187 (73%), Gaps = 2/187 (1%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           RR+QL  DLRDE+ PKNIL++GPTGVGKT ISRRLA+LA APF+KVE TKFTE+GYVGR+
Sbjct: 1   RRKQLADDLRDEVYPKNILMIGPTGVGKTEISRRLAKLARAPFLKVEATKFTEVGYVGRD 60

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
           V+ IIRDLVD A+   R   R++V+ +A   AE+R+++A+ GK A   TRE+FR KL+ G
Sbjct: 61  VDSIIRDLVDAAMVETRARMREDVKARAFKAAEDRVIEAIAGKDAREQTREMFRGKLKRG 120

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E+ D  I++EVADTS+    FD  G   +G++NL +LF K+   GR +K +M+V + +  
Sbjct: 121 ELDDTVIELEVADTSNPFGAFDPTGQGQMGMMNLGDLFGKL--GGRSQKRKMTVAESHEL 178

Query: 219 LMRDESD 225
           L+ DE+D
Sbjct: 179 LISDEAD 185


>gi|307328454|ref|ZP_07607629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           violaceusniger Tu 4113]
 gi|306885866|gb|EFN16877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           violaceusniger Tu 4113]
          Length = 428

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 60/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ +      
Sbjct: 115 SNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAG-YVGEDVENILLKLIQAADY 173

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            ++  E  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG++ S         
Sbjct: 174 DVKKAET-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 232

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  I+T ++LFI  GAF                                      P
Sbjct: 233 PHQEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMP 292

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   + +L++     IL +  + L+ QY  L + +G+ LDF  
Sbjct: 293 EDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYMRLFELDGVELDFDH 352

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423
            +++A+AD A+   +     GAR L+ ++E VL    +     ++   VVI  + V  ++
Sbjct: 353 PALEAIADQAILRGT-----GARGLRAIIEEVLMSAMYEVPSRKDVARVVITEDVVHSNV 407

Query: 424 G 424
            
Sbjct: 408 N 408



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 32/244 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRDELMPKNILLVGP 61
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q         D   EL   NILL+GP
Sbjct: 63  KPREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGHSRDDGIELAKSNILLLGP 122

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES---- 117
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V+++    
Sbjct: 123 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGI 182

Query: 118 ----RRDEVREQAS----------INAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                 D+V  ++              ++ +L  L G TA+           + G     
Sbjct: 183 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPP--------QGGRKHPH 234

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           +  I++  T+          G    I + +       G+  + K  +     + E+M ++
Sbjct: 235 QEFIQIDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPED 294

Query: 224 SDRL 227
             + 
Sbjct: 295 LVKF 298


>gi|194335899|ref|YP_002017693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693399|sp|B4SEI4|CLPX_PELPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194308376|gb|ACF43076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 438

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 141/322 (43%), Gaps = 71/322 (22%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           ++ + +D E+ IE        SN  + G    G   L++  + ++          S+ + 
Sbjct: 117 QEQQQADDEVVIEK-------SNILLIGPTGTGKTLLAQTLANLLEVPFSIVDATSLTEA 169

Query: 216 YPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGV 271
                  E+   RL+     + +  +     GI+++DE DKI  + +   I   VS EGV
Sbjct: 170 GYVGDDVETILARLLHAADFNLERTER----GIIYVDEIDKIARKSANVSITRDVSGEGV 225

Query: 272 QRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HVSRPA- 310
           Q+ LL ++EG+ V    K G         +INT +ILFI  GAF          VS+ + 
Sbjct: 226 QQALLKILEGAVVGVPPKGGRKHPEQQLININTKNILFICGGAFEGLDKLIAKRVSKSSM 285

Query: 311 -----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                         L+PE  GR PV   L+ L++   R IL + 
Sbjct: 286 GFGAKVKTTQIGYDPEILKLVMQDDLHEYGLIPEFIGRLPVISTLEMLDEKALRNILVEP 345

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ +  QYK+L + +G+ L+FTE+++D +  +A+   +     GAR L++V+E V+ DI 
Sbjct: 346 KNAITKQYKKLFEMDGVELEFTEEALDKVVKIAIERGT-----GARALRSVLENVMIDIM 400

Query: 402 FSASDLQEK-TVVIDAEYVRLH 422
           F    ++     VI A+ +   
Sbjct: 401 FEIPSMKNTHKCVITADTIENK 422



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 15/303 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTG 63
           SP+ I+  L +Y++GQ  AK+++A+A+ N ++R     Q  AD    +   NILL+GPTG
Sbjct: 81  SPKAIMDSLGQYVVGQDAAKKSLAVAVYNHYKRIDSQEQQQADDEVVIEKSNILLIGPTG 140

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  A   +  + R    
Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHAADFNLERTERGIIY 200

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 201 VDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLININTKN 260

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
              I GGA  G+  L          G   K++ +           E  +L+  D +H   
Sbjct: 261 ILFICGGAFEGLDKLIAKRVSKSSMGFGAKVKTT-----QIGYDPEILKLVMQDDLHEYG 315

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           +       +  +   + +  +   N +   +  + +    L E   V  ++     D ++
Sbjct: 316 LIPEFIGRLPVISTLEMLDEKALRNILVEPKNAITKQYKKLFEMDGVELEFTEEALDKVV 375

Query: 298 FIA 300
            IA
Sbjct: 376 KIA 378


>gi|225352781|ref|ZP_03743804.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156388|gb|EEG69957.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 447

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 123/314 (39%), Gaps = 72/314 (22%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D  +A      SN  + G   VG   L++  +KVM          ++ +           
Sbjct: 126 DDPLAGVQVSKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEA--------GY 177

Query: 226 RLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLL 276
              D++TV +  IQ  +        GIV++DE DKI  +   N      VS EGVQ+ LL
Sbjct: 178 VGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALL 237

Query: 277 PLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------------- 304
            ++EG+  S                I+T  ILFI  GAF                     
Sbjct: 238 KILEGTVASVPVEGSRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAA 297

Query: 305 -----------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                                   LLPE  GR PV   L+ L + D   IL   E+ L+ 
Sbjct: 298 WHDHEVPNRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVAPENALVK 357

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY++L   +G+ L FTE ++  +A  ++   +     GAR L++++E+ LED  F    +
Sbjct: 358 QYQKLFAIDGVTLTFTEGAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMFQLPSV 412

Query: 408 QE-KTVVIDAEYVR 420
                VV+D   V 
Sbjct: 413 TGVSEVVVDEASVN 426



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 24/209 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD-------------E 50
            P +I + LD Y++GQ+ AKR +++A+ N ++R  +     A LRD             +
Sbjct: 74  KPAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESAALRDRAAHASDDPLAGVQ 133

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 134 VSKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193

Query: 111 INIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              V  ++      DE+ + A  + E   I   + G+       ++    +    +    
Sbjct: 194 DGDVARAQQGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTVASVPVEGSR 253

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNL 192
              E+     D  +   I GGA VG+ ++
Sbjct: 254 KHREMETVQIDTRDILFICGGAFVGLADI 282


>gi|149275731|ref|ZP_01881876.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39]
 gi|149233159|gb|EDM38533.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39]
          Length = 392

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 136/333 (40%), Gaps = 78/333 (23%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L      + E++IE        SN  + G    G   L++  +K++         +
Sbjct: 71  HYKRLSQQVNKEDEVEIEK-------SNIMLVGETGTGKTLLAKTIAKILH--------V 115

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
               C   ++ +      D++++    +Q  +        GIV++DE DK+  +     I
Sbjct: 116 PFCICDATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIVYIDEVDKVARKSDNPSI 175

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------- 303
              VS EGVQ+ LL ++EG+ V+            K   +NT++ILFI  GA        
Sbjct: 176 TRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIPVNTNNILFICGGAFDGIERKI 235

Query: 304 ------------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
                                             +   L+PE+ GR PV  HL  L+KS 
Sbjct: 236 ANRLRTQAVGYKVKKDDVDLDLKNLYKYITPQDLKSFGLIPELIGRVPVLTHLNPLDKSA 295

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
            R ILT+ +++L  QY +L + EG+ L F ++ +D + D A+        +GAR L+++ 
Sbjct: 296 LRNILTEPKNSLFRQYVKLFEFEGVELVFEDEVLDFIVDKAMEYK-----LGARGLRSIC 350

Query: 394 ERVLEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           E ++ D  F        K +VI  +Y       
Sbjct: 351 EAIMLDAMFDIPSDPGIKELVITLDYAIEKFEK 383



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 9/260 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64
             P EI + +D+Y+IGQ DAK+ +++A+ N ++R  QQ+  +   E+   NI+LVG TG 
Sbjct: 41  LKPAEIKAHIDQYVIGQDDAKKVLSVAVYNHYKRLSQQVNKEDEVEIEKSNIMLVGETGT 100

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     
Sbjct: 101 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIVYI 160

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV + A  +    I   + G+       ++    + +          +      + +N 
Sbjct: 161 DEVDKVARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIPVNTNNI 220

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G +   +           +   K  +  V      L +  + + +    +  + I 
Sbjct: 221 LFICGGAFDGIERKIANRLRTQAVGYKVKKDDVDLDLKNLYKYITPQDLKSFGLIPELIG 280

Query: 240 MVENYGIVFLDEFDKIVARD 259
            V    +  L+  DK   R+
Sbjct: 281 RV--PVLTHLNPLDKSALRN 298


>gi|325286840|ref|YP_004262630.1| Sigma 54 interacting domain-containing protein [Cellulophaga lytica
           DSM 7489]
 gi|324322294|gb|ADY29759.1| Sigma 54 interacting domain protein [Cellulophaga lytica DSM 7489]
          Length = 411

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 135/325 (41%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L     +D +++I+        SN  + G    G   +++  +K++          
Sbjct: 90  HYKRLLQPSSADDDVEIQK-------SNIVMAGQTGTGKTLMAKTIAKMLNVPLAIVDAT 142

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +      +++  E  GIVF+DE DKI  +     I   VS 
Sbjct: 143 VLTEAG-YVGEDVESLLTRLLQAADYNLEKAE-RGIVFIDEIDKIARKSDNPSITRDVSG 200

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL L+EG+ V+            K+  +NT++ILFIA GA              
Sbjct: 201 EGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILFIAGGAFDGIERIITKRLNM 260

Query: 304 ----FHVSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLILT 339
               +  S+  D                    L+PEI GR PV  H+  L++   R ILT
Sbjct: 261 QAVGYSASKLDDNVDNTNILQYIIPKDLKEFGLIPEIIGRLPVLTHMNPLDEKTLRAILT 320

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ +I QY++L   + I    T+ ++D +   A+        +GAR L+++ E +  D
Sbjct: 321 EPKNAIIKQYEKLFAMDDIKFSITDKALDFVVSKAIEYK-----LGARGLRSLCEAIFTD 375

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIG 424
             F     Q+K   +  EY    + 
Sbjct: 376 AMFELPSSQDKEFKVTQEYAEQKLS 400



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
            P EI + LD +IIGQ+  K+ +++A+ N ++R   P  AD   E+   NI++ G TG G
Sbjct: 61  KPMEIKAFLDTFIIGQERTKKVMSVAVYNHYKRLLQPSSADDDVEIQKSNIVMAGQTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +A++   P   V+ T  TE GYVG +VE ++  L+  A   + ++ R     D
Sbjct: 121 KTLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESLLTRLLQAADYNLEKAERGIVFID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +      +  N  
Sbjct: 181 EIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENIL 240

Query: 181 IPGGASVGILN 191
              G +   + 
Sbjct: 241 FIAGGAFDGIE 251


>gi|297568326|ref|YP_003689670.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924241|gb|ADH85051.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 594

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/439 (22%), Positives = 170/439 (38%), Gaps = 86/439 (19%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMP 53
             F+ +P E+++ LD+Y++GQ++AK  +A  +   + R             +      + 
Sbjct: 63  FHFDLAPEELIAHLDQYVVGQEEAKAILATKICTHFNRISRSLSRPGGEAGSGRNVGRIK 122

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            N+LL+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE +IRDLV  A N 
Sbjct: 123 NNVLLIGPTGVGKTYLIKLIAQHIGVPFVKGDATKFSETGYVGGDVEDLIRDLVREADND 182

Query: 114 VRESRRDEVR----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +  +R   V     ++ +   + R LD         +   V R  L+  E  + E++++V
Sbjct: 183 LERARFGIVYLDEVDKIAGGVDRRGLDV--------SRSGVQRALLKPME--ETEVEMKV 232

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                               + + E       +G++++                      
Sbjct: 233 PHDP----------------IAMMEAVEHYRLTGKRQRK--------------------- 255

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
             +++   I  + +     LDE   I  R     IG                   +T   
Sbjct: 256 --SINTRHILFIMSGAFSGLDEI--IGRRLQQRSIGFE-----------------NTVAA 294

Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
           +        +A              E  GR PV   L  L++ D   IL+   S +++  
Sbjct: 295 AAPARPGALMARARAEDLVEYGFESEFIGRLPVLAVLSELSEDDLYEILSSPNSAVVVGK 354

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           K+  +  GI L F + ++       +   +     GAR L +VMERVL            
Sbjct: 355 KQDFRAYGIELRFEDAALRK-----LAALAARESTGARALVSVMERVLLHFEKKLPSTDI 409

Query: 410 KTVVIDAEYVRLHIGDFPS 428
           + +V+  E V    G+   
Sbjct: 410 RQLVVTPELVADPAGELAK 428


>gi|320530214|ref|ZP_08031284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
 gi|320137647|gb|EFW29559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas
           artemidis F0399]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          S+ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADY 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS--VSTKYG--- 289
            I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++  V  + G   
Sbjct: 170 DIEKAQ-RGIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKH 228

Query: 290 ------SINTDHILFIASGAF--------------------------------HVSR--P 309
                  I+T +ILFI  GAF                                 +S+  P
Sbjct: 229 PQQELLQIDTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIP 288

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV V L SL+++    ILT+ ++ L+ Q++ L+  +G+ L F +
Sbjct: 289 EDLMKNGLIPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQ 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
           D++  +A  A+   +     GAR L+ ++E ++ ++ +    +Q  T   +  E V  H 
Sbjct: 349 DALHLIAKEALTHKT-----GARGLRAIIEGIMRNVMYEVPSIQGVTACQVTREVVANHS 403

Query: 424 GDFPS 428
               +
Sbjct: 404 DPILT 408



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVG 65
            P+EI   LD+Y+IGQ +AK+++++A+ N ++R       +   EL   NIL++GPTG G
Sbjct: 63  KPKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + +++R     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQRGIIYVD 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++                 +      D +N  
Sbjct: 183 EIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQIDTTNIL 242

Query: 180 DIPGGASVGILNLSEL----FSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
            I GGA  GI  + E          G+  + K R+SV +   +++ ++  +
Sbjct: 243 FICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMK 293


>gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
 gi|238689204|sp|B2GGB7|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria
           rhizophila DC2201]
          Length = 431

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 58/310 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           + +        SN  + G    G   L++  +K +          S+ +    +  D  +
Sbjct: 111 EGDEEAIEVAKSNILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAG-YVGEDVEN 169

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 170 ILLKLIQAADFDLKKAEQ-GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTV 228

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  I+T ++LFI +GAF                            
Sbjct: 229 ASVPPQGGRKHPQQEFLHIDTTNVLFIVAGAFAGLEEIVQQRTGKKGIGFGAPIRDTADV 288

Query: 306 ----VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                 +P DLL     PE  GR PV   L  L+ +D   ILT+  + L+ QY++L + +
Sbjct: 289 DIAGQVQPEDLLKFGLIPEFIGRLPVVATLSKLSVADMVRILTEPRNALVKQYRKLFQLD 348

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVID 415
           G+ L F   +++A+A++A+   +     GAR L+ ++E +L  + F     ++   V++ 
Sbjct: 349 GVELTFDPQALEAIAELALERGT-----GARGLRAILEDILMPVMFDLPGREDVAAVLVT 403

Query: 416 AEYVRLHIGD 425
            + V   + D
Sbjct: 404 EDAV-AKLAD 412



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 13/124 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPKN 55
           P+++   L  Y+IGQ+ AKR++A+A+ N ++R +                +   E+   N
Sbjct: 64  PKQVYDHLQEYVIGQEPAKRSLAVAVYNHYKRIRAGVSGHTLSLAGAEGDEEAIEVAKSN 123

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILLVGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   ++
Sbjct: 124 ILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAGYVGEDVENILLKLIQAADFDLK 183

Query: 116 ESRR 119
           ++ +
Sbjct: 184 KAEQ 187


>gi|330836760|ref|YP_004411401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
 gi|329748663|gb|AEC02019.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta
           coccoides DSM 17374]
          Length = 410

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 59/302 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                D SN  + G    G   L+   ++ +          ++ +    +  D  + L+ 
Sbjct: 102 EGVEMDKSNILMIGPTGTGKTLLARTLARKLKVPFAIADATTLTEAG-YVGEDVENILLK 160

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +     D+I   E  GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+  +  
Sbjct: 161 LIQNANDNIAEAE-RGIIFIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVP 219

Query: 287 ----------KYGSINTDHILFIASGAFH----------VSRPAD--------------- 311
                     +   INT +ILFI  GAF            S+P                 
Sbjct: 220 PQGGRKHPNQEMIKINTSNILFICGGAFVGLEKVIEKRVASQPMGFGATLSSSQKDLSTL 279

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+ V L +L K D   I+++ ++ ++ QY    K + +
Sbjct: 280 YKELLPDDLVKFGLIPEFIGRLPIHVSLDNLKKEDLIRIISEPKNAILRQYVASFKLDNV 339

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+F ++++DA+A+ A+   +     GAR L++++E ++ DI +    +   K VVID +
Sbjct: 340 SLEFKQEAVDAIAEKAIGQKT-----GARGLRSIVENIMIDIMYDIPSMSNVKKVVIDRD 394

Query: 418 YV 419
            V
Sbjct: 395 AV 396



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 10/197 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTG 63
           +P+EI S LD Y+IGQ  AKR +++A+ N ++R +    L      E+   NIL++GPTG
Sbjct: 59  TPQEIKSYLDDYVIGQDAAKRVLSVAVYNHYKRIKYQNRLSKEEGVEMDKSNILMIGPTG 118

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT ++R LAR    PF   + T  TE GYVG +VE I+  L+  A + + E+ R    
Sbjct: 119 TGKTLLARTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNIAEAERGIIF 178

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A       I   + G+       ++      +                 + SN
Sbjct: 179 IDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVPPQGGRKHPNQEMIKINTSN 238

Query: 179 F-DIPGGASVGILNLSE 194
              I GGA VG+  + E
Sbjct: 239 ILFICGGAFVGLEKVIE 255


>gi|157804081|ref|YP_001492630.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           canadensis str. McKiel]
 gi|166215198|sp|A8EZR2|CLPX_RICCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157785344|gb|ABV73845.1| ATP-dependent protease ATP-binding subunit [Rickettsia canadensis
           str. McKiel]
          Length = 425

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 133/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + E+++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYIQSGNNEVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFSMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIAAEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITARTNN 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANININREKNNSEILQALEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELIIENSALEAIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L++  V I  E V   +    +
Sbjct: 377 DSMYKVAELKKHRVTITKEVVNGLVEPIMT 406



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I + L+ YI+GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICTILNDYIVGQDQAKKILAVAVYNHYKRLEYIQSGNNEVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFSMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++          S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITARTNNSSIGFAANININREKNNSEILQALEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|88607602|ref|YP_505536.1| ATP-dependent protease ATP-binding subunit [Anaplasma
           phagocytophilum HZ]
 gi|123494661|sp|Q2GJB5|CLPX_ANAPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88598665|gb|ABD44135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaplasma
           phagocytophilum HZ]
          Length = 415

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 59/304 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +++     SN  + G    G   L+   ++V+          ++ +    +  D  + L+
Sbjct: 98  ISEVEISKSNVLLIGPTGSGKTLLARTLARVLQVPFAMADATTLTEAG-YVGEDVENILL 156

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
            +      +++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S 
Sbjct: 157 KLLQAANFNVEAAQ-RGIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSV 215

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  I+TD+ILFI  GAF                               
Sbjct: 216 PPQGGRKHPHQEFIQISTDNILFIFGGAFDGLEKIIEARNRGSSMGFEANVQSMVSPTKD 275

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
               + P DL     +PE  GR PV   L  L+++    +L + +++L+ QY +L + + 
Sbjct: 276 VLSYAEPEDLVKFGLIPEFIGRIPVITSLGKLDENTLFRVLVEPKNSLVKQYAKLFEMDN 335

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDA 416
           + L F +D++ A+A  AV+ N+     GAR L+ +ME +L D  F       E  V I  
Sbjct: 336 LELKFDDDALMAIARKAVDRNT-----GARGLRAIMESLLLDFMFDPQGCAHEGKVSISK 390

Query: 417 EYVR 420
           E V 
Sbjct: 391 EMVE 394



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
            F+  PREI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPT
Sbjct: 55  RFDLKPREIKEVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPT 114

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R   
Sbjct: 115 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQRGII 174

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV + +  +    I   + G+       +V    +                      
Sbjct: 175 YIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQISTD 234

Query: 178 NF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           N   I GGA  G+  + E  ++    G +  ++  V      L   E + L+
Sbjct: 235 NILFIFGGAFDGLEKIIEARNRGSSMGFEANVQSMVSPTKDVLSYAEPEDLV 286


>gi|146299463|ref|YP_001194054.1| ATP-dependent protease ATP-binding subunit [Flavobacterium
           johnsoniae UW101]
 gi|146153881|gb|ABQ04735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Flavobacterium johnsoniae UW101]
          Length = 410

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 137/326 (42%), Gaps = 66/326 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   ++ D E++IE        SN  + G    G   +++  +K++          
Sbjct: 90  HYKRLMQQQL-DDEVEIEK-------SNIIMVGQTGTGKTLVAKTIAKMLDVPLAIVDAT 141

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +       +   E  GIVF+DE DKI  +     I   VS 
Sbjct: 142 VLTEAG-YVGEDVESILTRLLQAADYDVTKAE-RGIVFIDEIDKIARKSDNPSITRDVSG 199

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL L+EG+ V+            K+  +NT +ILFIA GA              
Sbjct: 200 EGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEVNTQNILFIAGGAFDGVERIISKRLNR 259

Query: 304 ----FHVSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLILT 339
               +  S+ AD                    L+PEI GR PV  H+  L+K   R ILT
Sbjct: 260 QAVGYSTSKNADNIDKDNLLQYIIPKDIKDFGLIPEIIGRLPVLTHMDPLDKETLRAILT 319

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
             ++ L+ QY++L   + +    T++++D + D A+        +GAR L+++ E +L D
Sbjct: 320 QPKNALVKQYQKLFLMDEVEFTITDEALDFIVDKALEYK-----LGARGLRSLCEAILTD 374

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      +K + ID +Y    +  
Sbjct: 375 AMYELPSSDDKILSIDKDYAEHTLSK 400



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P+EI + LD+Y+IGQ   K+ +++A+ N ++R      D   E+   NI++VG TG GK
Sbjct: 61  KPKEIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQQLDDEVEIEKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V
Sbjct: 121 TLVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVTKAERGIV 176


>gi|91216685|ref|ZP_01253650.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis
           ATCC 700755]
 gi|91185154|gb|EAS71532.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis
           ATCC 700755]
          Length = 410

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 159/381 (41%), Gaps = 70/381 (18%)

Query: 99  VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV----FRKK 154
           +EQ    +V+ +     E    E++ +     ++ +   ++G+  T     V      K+
Sbjct: 34  IEQAHGIVVEESKQDSTEELSSELKLRKPKAIKDFLDQYVIGQDQTKKVMSVAVYNHYKR 93

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L   +  D   DIE+  +     N  + G    G   +++  +K++           + +
Sbjct: 94  LLQPKSKD---DIEIQKS-----NIIMAGQTGTGKTLVAKTIAKMLNVPLAIVDATVLTE 145

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
               +  D    L  +      + +  E +GIVF+DE DKI  +     I   VS EGVQ
Sbjct: 146 AG-YVGEDVETILTKLLAAADYNTEKAE-HGIVFIDEIDKIARKSDNPSITRDVSGEGVQ 203

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF-----HVSR-------- 308
           + LL L+EG++V+            K+  +NT++ILFIA GAF     ++S+        
Sbjct: 204 QALLKLLEGTTVNVPPKGGRKHPDQKFIEVNTENILFIAGGAFDGIEKNISKRLNMQAVG 263

Query: 309 --------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                               P DL     +PEI GR PV  ++  L+K   R ILT+ ++
Sbjct: 264 YGASKLGESVDKENILQYIIPKDLKDYGLIPEIIGRLPVLTYMDPLDKETLRRILTEPKN 323

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            +I QYK+L + + I    T+ ++D +   A+        +GAR L+++ E +L D  F 
Sbjct: 324 AIIKQYKKLFEMDNIDFQITDGALDFIVQKALEYK-----LGARGLRSLCEAILTDAMFY 378

Query: 404 ASDLQEKTVVIDAEYVRLHIG 424
             +  E    +   Y    + 
Sbjct: 379 LPESDETEFKVTKSYAEKSLE 399



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 102/253 (40%), Gaps = 8/253 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+ I   LD+Y+IGQ   K+ +++A+ N ++R   P    D E+   NI++ G TG GK
Sbjct: 61  KPKAIKDFLDQYVIGQDQTKKVMSVAVYNHYKRLLQPKSKDDIEIQKSNIIMAGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A     ++       DE
Sbjct: 121 TLVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVETILTKLLAAADYNTEKAEHGIVFIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++      +          +      +  N   
Sbjct: 181 IDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEVNTENILF 240

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +   +  +      M +      ++        +++    + +    +  + I  +
Sbjct: 241 IAGGAFDGIEKNISKRLNMQAVGYGASKLGESVDKENILQYIIPKDLKDYGLIPEIIGRL 300

Query: 242 ENYGIVFLDEFDK 254
               + ++D  DK
Sbjct: 301 --PVLTYMDPLDK 311


>gi|237752785|ref|ZP_04583265.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376274|gb|EEO26365.1| ATP-dependent protease ATP-binding subunit [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 416

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 126/319 (39%), Gaps = 58/319 (18%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           I+  DT    SN  + G    G   +++  +K +          S+ +    +  D  + 
Sbjct: 102 IDDDDTEITKSNILLIGPTGSGKTLMAQTLAKFLNIPIAICDATSLTEAG-YVGEDVENI 160

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L  +       IQ  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V
Sbjct: 161 LTRLLQEAGGDIQKAQK-GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVV 219

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  I+T  ILFI  GAF                             
Sbjct: 220 NVPPKGGRKHPNQEFIQIDTKDILFICGGAFDGLKDIIERRLGGNTLGFHNKKGKKKELE 279

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE+ GR  +   L+ + K     IL   ++ L  QYK+L   +
Sbjct: 280 YVLEFVEPDDLVSYGLIPELIGRLHMFATLEEITKEAMIEILQKPKNALTKQYKKLFSLD 339

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G  L F ++++  +A +A++  +     GAR L+ +ME ++ D+ +   +L    VVI  
Sbjct: 340 GAQLTFKDEALQEIAGLAISRKT-----GARGLRAIMEEIMLDVMYELPELSGYEVVITK 394

Query: 417 EYV-RLHIGDFPSETDMYH 434
           E V +        +     
Sbjct: 395 EAVLKEAKPMLIKQKKTSK 413



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           SP+E+ + LD Y+IGQ+ AK+  ++A+ N ++R    A + D   E+   NILL+GPTG 
Sbjct: 63  SPKELKAVLDEYVIGQEKAKKVFSVAVYNHYKRVLQGAAIDDDDTEITKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV-- 122
           GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   ++++++  V  
Sbjct: 123 GKTLMAQTLAKFLNIPIAICDATSLTEAGYVGEDVENILTRLLQEAGGDIQKAQKGIVFI 182

Query: 123 --REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
              ++ S  +E R I   + G+       ++    + +                 D  + 
Sbjct: 183 DEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQEFIQIDTKDI 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRK--KKIRMSVQKCYPELMRDESDRLI 228
               G +     L ++  + +G         +   ++    L   E D L+
Sbjct: 243 LFICGGAFD--GLKDIIERRLGGNTLGFHNKKGKKKELEYVLEFVEPDDLV 291


>gi|291548892|emb|CBL25154.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Ruminococcus torques L2-14]
          Length = 489

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 141/358 (39%), Gaps = 71/358 (19%)

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
            +     +E I+     K A S       K++  G + + EI+          SN  + G
Sbjct: 139 HKIKARLDEYIVGQEYAKKAISVAVYNHYKRVATGTMDEIEIE---------KSNMLMIG 189

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMV 241
               G   L +  +K++          S+ +        ES   +L+       + ++  
Sbjct: 190 PTGCGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLL---AAADNDVERA 246

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------S 290
           E  GI+F+DE DKI  + + +   VS E VQ+ +L L+EGS V    G           +
Sbjct: 247 EQ-GIIFIDEIDKIAKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTT 305

Query: 291 INTDHILFIASGAF---------------------------------------HVSRPAD 311
           +NT +ILFI  GAF                                          R   
Sbjct: 306 VNTKNILFICGGAFPDLEDIIKERLQKKTSMGFNAELKDTVEHDEELLSKVTIEDLRKFG 365

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR P+   LK L+K     IL + ++ ++ QY++L+  + + L+F + +++A+A
Sbjct: 366 MIPEFLGRLPIVFTLKGLDKEMLVKILKEPKNAILKQYQKLLALDEVKLEFDDSALEAIA 425

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPS 428
           + A+       D GAR L+ ++E  + DI +    D     V I   Y+    G    
Sbjct: 426 EKAME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITRAYIEGTGGPVIQ 478



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 15/242 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD YI+GQ+ AK+A+++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 138 PHKIKARLDEYIVGQEYAKKAISVAVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKTY 197

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LA+L   P    + T  TE GY+G ++E ++  L+  A N V  +      EQ  I
Sbjct: 198 LVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERA------EQGII 251

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGE---ISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D +  K  TS+ R+V  + ++ G    +   E+++ V   S +          
Sbjct: 252 FIDE--IDKI-AKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 308

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +      F  +    +++  + +      EL         D + + + +I+ +  +G
Sbjct: 309 KNILFICGGAFPDLEDIIKERLQKKTSMGFNAELKDTVEH---DEELLSKVTIEDLRKFG 365

Query: 246 IV 247
           ++
Sbjct: 366 MI 367


>gi|146318491|ref|YP_001198203.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis
           05ZYH33]
 gi|145689297|gb|ABP89803.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis
           05ZYH33]
          Length = 396

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 148/368 (40%), Gaps = 67/368 (18%)

Query: 107 VDVAINIVRESRRDEV-REQASINAEERILDAL-----VGKTATSNTREVFRKKLRDGEI 160
           V++A  I+RE   +EV  + A     + +L+ L         A            +    
Sbjct: 38  VELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF 97

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D   + +V    S+I      G    G   L++  +K +          ++ +    + 
Sbjct: 98  QDSRDENDVDLQKSNILMI---GPTGSGKTFLAQTLAKSLNVPFAIADATALTEAG-YVG 153

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + L+ +      +I   E  GI+++DE DKI  +     I   VS EGVQ+ LL +
Sbjct: 154 EDVENILLKLLQAADFNIDRAE-RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKI 212

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF-------------------HVSR 308
           +EG+  S            +   ++T +ILFI  GAF                   H +R
Sbjct: 213 IEGTVASVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNR 272

Query: 309 PAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             D                  ++PE+ GR PV   L  L   D   ILT+ ++ L+ QY+
Sbjct: 273 AIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQ 332

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
            L+  + + LDF ED++ A+A+ A+   +     GAR L++++E  + D+ F        
Sbjct: 333 TLLSYDDVELDFDEDALLAIAEKAIERKT-----GARGLRSIIEETMLDVMFEVPGQDNV 387

Query: 410 KTVVIDAE 417
           K V +  +
Sbjct: 388 KRVRVTKQ 395



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILL 58
           L     P+E+++ L+ Y+IGQ  AKRA+A+A+ N ++R     D RDE    L   NIL+
Sbjct: 57  LADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQ-DSRDENDVDLQKSNILM 115

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + 
Sbjct: 116 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAE 175

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A       I   + G+       ++    +                  
Sbjct: 176 RGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIH 235

Query: 174 SDISNF-DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-ID 229
            D  N   I GGA  GI  +    L  K++G G   +     +     ++ D+  +  I 
Sbjct: 236 VDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGII 295

Query: 230 MDTVHR 235
            + + R
Sbjct: 296 PELIGR 301


>gi|254247969|ref|ZP_04941290.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
 gi|124872745|gb|EAY64461.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184]
          Length = 390

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  +  DK+ D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 63  NHYKRLKHLDKKDDVELSKS-----NILLIGPTGSGKTLLAQTLARLLNVPFVIADATTL 117

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q           GIV++DE DKI  +     I  
Sbjct: 118 TEA--------GYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITR 169

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL LVEG+  S             +  ++T +ILFI  GAF         
Sbjct: 170 DVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILFICGGAFDGLEKVITD 229

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                      + P DL+     PE+ GR PV   L  L+++  
Sbjct: 230 RTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPELIGRLPVVATLGKLDEAAL 289

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             IL + ++ L+ QY +L   E + L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 290 MKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKT-----GARGLRSIIE 344

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           + L D+ +    ++    V+ID   +           D
Sbjct: 345 QALLDVMYELPTMKGVSKVIIDENVIDGDGKPLLIYED 382



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP+EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 35  SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGK 94

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LARL   PF+  + T  TE GYVG +VE II+ L+      V +++R     DE
Sbjct: 95  TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDE 154

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 155 IDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNILF 214

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L   +++   K              +     L   E + LI
Sbjct: 215 ICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLI 263


>gi|255016909|ref|ZP_05289035.1| ATP-dependent protease ATP-binding subunit HslU [Listeria
           monocytogenes FSL F2-515]
          Length = 178

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 121/175 (69%), Gaps = 6/175 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + L    +P++IV +LD+YIIGQ  AK++VA+ALRNR+RRQ +   +RDE++PKNIL++G
Sbjct: 4   LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           PTGVGKT I+RR+A++  APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E +  
Sbjct: 64  PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123

Query: 121 EVREQASINAEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEV 169
            VR +A  NAE+R++  L        T         F    +  E  ++E+D E+
Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQEL 178


>gi|322418660|ref|YP_004197883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M18]
 gi|320125047|gb|ADW12607.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp.
           M18]
          Length = 417

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 64/336 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    +E      D+    SN  + G    G   L++  ++++    
Sbjct: 80  QARAKKVLAVAVYNHYKRVEATTKPGDVEMQKSNILLLGPTGSGKTLLAQTLARILKVPF 139

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + ++ +       ++  +  GI+++DE DKI  +     I
Sbjct: 140 AMADATNLTEAG-YVGEDVENIILTLLQAADYDVEKAQK-GIIYIDEIDKIARKSDSPSI 197

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG+  S            ++  ++T +ILF+  GAF       
Sbjct: 198 TRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFLKVDTTNILFVCGGAFPGLDSII 257

Query: 305 -------------HVSR--------------PADLL-----PEIQGRFPVRVHLKSLNKS 332
                         V +              P DLL     PE  GR P+   L  L++ 
Sbjct: 258 QQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGFIPEFVGRLPMLASLSELDEE 317

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               IL + ++ LI QY++L + E + L FT+ S+ A+A  A+   +     GAR L+++
Sbjct: 318 AMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLIAIAREALKRKT-----GARGLRSI 372

Query: 393 MERVLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
           +E  + DI +        K VVI  E +        
Sbjct: 373 LENAMLDIMYEIPSQSMVKEVVISEEVIYNKEKPII 408



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ  AK+ +A+A+ N ++R +      D E+   NILL+GPTG GK
Sbjct: 65  KPQEIKEVLDEYVIGQARAKKVLAVAVYNHYKRVEATTKPGDVEMQKSNILLLGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V ++++     DE
Sbjct: 125 TLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQAADYDVEKAQKGIIYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 185 IDKIARKSDSPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFLKVDTTNILF 244

Query: 182 PGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L+  + +              +   +K    L     + L+
Sbjct: 245 VCGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLL 293


>gi|154502353|ref|ZP_02039413.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149]
 gi|153796978|gb|EDN79398.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 67/321 (20%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +D   DIE+  +     N  + G    G   L +  ++++          S+ +      
Sbjct: 175 TDSVDDIEIEKS-----NMLMIGPTGSGKTYLVKTLARLLDVPLAITDATSLTEAGYIGD 229

Query: 221 RDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278
             ES   +L+       + ++  E  GI+F+DE DKI  + + +   VS E VQ+ LL L
Sbjct: 230 DIESVVSKLL---AAADNDVEKAEQ-GIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKL 285

Query: 279 VEGSSVSTKYG-----------SINTDHILFIASGAF----------------------- 304
           +EGS V    G           ++NT +ILFI  GAF                       
Sbjct: 286 LEGSEVEVPVGANSKNAMVPLTTVNTKNILFICGGAFPDLEGIIKERLMHKTSMGFNAEL 345

Query: 305 ----------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                              R   ++PE  GR P+   LK L+K  +  IL + ++ ++ Q
Sbjct: 346 KDQYDNDKDILSKVTVEDLRNFGMIPEFIGRLPIIFTLKGLDKDMYVKILKEPKNAILKQ 405

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DL 407
           Y++L+  + + LDF + +++A+A+ A+   +     GAR L+ ++E  + DI +    D 
Sbjct: 406 YQKLLALDEVKLDFDDGALEAIAEKAMKKET-----GARALRAIIEEFMLDIMYEIPKDE 460

Query: 408 QEKTVVIDAEYVRLHIGDFPS 428
               V I   Y+    G   S
Sbjct: 461 NIGEVTITRSYIEGTGGPLIS 481



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 15/242 (6%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I  +LD Y++GQ+ AK+A+A+A+ N ++R    +    E+   N+L++GPTG GKT 
Sbjct: 141 PHKIKGKLDEYVVGQEYAKKAMAVAVYNHYKRVATDSVDDIEIEKSNMLMIGPTGSGKTY 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++      EQ  I
Sbjct: 201 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGII 254

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRD---GEISDKEIDIEVADTSSDISNFDIPGGA 185
             +E  +D +  K   S+ R+V  + ++      +   E+++ V   S +          
Sbjct: 255 FIDE--IDKI-AKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNT 311

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +      F  + G  +++ +  +      EL     +   D D + + +++ + N+G
Sbjct: 312 KNILFICGGAFPDLEGIIKERLMHKTSMGFNAELKDQYDN---DKDILSKVTVEDLRNFG 368

Query: 246 IV 247
           ++
Sbjct: 369 MI 370


>gi|294054260|ref|YP_003547918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613593|gb|ADE53748.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Coraliomargarita akajimensis DSM 45221]
          Length = 461

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 66/363 (18%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDK-----EIDIEVADTSSDISNFDIPGGA 185
           +E I+     K A +       K+LR  E  +      E+D E  D   + SN  + G  
Sbjct: 84  DEHIISQDYAKRALAVAVYNHYKRLRSEERIEAATEFAELDAEFNDVQIEKSNILLLGPT 143

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             G   L+   +K++G         ++ +        E+  L  + T   D  +     G
Sbjct: 144 GSGKTLLARTLAKILGVPFAIADATTLTEAGYVGEDVENIVLRLLQTADYDVKKA--ECG 201

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           I+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +            +Y  ++
Sbjct: 202 IIYVDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTVCNVPPQGGRKHPNQEYIQLD 261

Query: 293 TDHILFIASGAF-----------------------------------HVSRPADL----- 312
           T +ILFI  GAF                                     ++P DL     
Sbjct: 262 TSNILFICGGAFVGLDKIVQGRMGSKAMGFDTTHNARTNEVPVSELLRETQPEDLVHFGM 321

Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           +PE  GR P+   L  L+ SD   IL +T++ LI QY +L   +G  L FT+D+I A+A+
Sbjct: 322 IPEFIGRLPMVAVLDELSVSDLEHILQNTKNALIKQYSKLFMMDGAKLHFTKDAIRAIAE 381

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
            A+ L +     GAR L+++MER++ D+ +     ++   VV++   V           +
Sbjct: 382 KAIALKT-----GARALRSIMERIMLDVMYELPHAEDAGEVVVNRAVVEGRGKPKIKPRE 436

Query: 432 MYH 434
             H
Sbjct: 437 KSH 439



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 23/249 (9%)

Query: 4   TFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------- 49
            FN   P EI + LD +II Q  AKRA+A+A+ N ++R +    +               
Sbjct: 70  RFNLVKPGEIKAHLDEHIISQDYAKRALAVAVYNHYKRLRSEERIEAATEFAELDAEFND 129

Query: 50  -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
            ++   NILL+GPTG GKT ++R LA++ G PF   + T  TE GYVG +VE I+  L+ 
Sbjct: 130 VQIEKSNILLLGPTGSGKTLLARTLAKILGVPFAIADATTLTEAGYVGEDVENIVLRLLQ 189

Query: 109 VAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
            A   V+++       DE+ +         I   + G+       ++    + +      
Sbjct: 190 TADYDVKKAECGIIYVDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTVCNVPPQGG 249

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELM 220
                      D SN     G +   L+      + SK MG       R +       L 
Sbjct: 250 RKHPNQEYIQLDTSNILFICGGAFVGLDKIVQGRMGSKAMGFDTTHNARTNEVPVSELLR 309

Query: 221 RDESDRLID 229
             + + L+ 
Sbjct: 310 ETQPEDLVH 318


>gi|307244054|ref|ZP_07526173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492578|gb|EFM64612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Peptostreptococcus stomatis DSM 17678]
          Length = 421

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 139/325 (42%), Gaps = 67/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   +I+ ++I+I+        SN  + G    G   L++  +K++          
Sbjct: 90  HYKRIYGDKIASEDIEIQK-------SNILLLGPTGSGKTLLAQTLAKILNVPFAIADAT 142

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + ++ +       I+  +  GI+++DE DKI  +     I   VS 
Sbjct: 143 SLTEAG-YVGEDVENIVLKLVQAADFDIEKAQ-RGIIYIDEIDKISRKSDNPSITRDVSG 200

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL ++EG+  +            ++  ++T +ILFI  GA              
Sbjct: 201 EGVQQALLKILEGTVANVPPSGGRKHPHQEFLKVDTTNILFILGGAFDGIEKIVQKRGKD 260

Query: 304 --------------------FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                               +    P DL     +PE  GR PV   L  L++     IL
Sbjct: 261 KVLGFGAKIESKTDMDIGKLYSQVIPDDLLKYGLIPEFVGRIPVLATLDLLDEESLVKIL 320

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ +++L+ QY +L + +   L+F  +++ A+A  A++ N+     GAR L++++E  L 
Sbjct: 321 TEPKNSLVKQYTKLFEYDDTKLEFEPEALSAIAKKAIDRNT-----GARGLRSIIEHSLM 375

Query: 399 DISFSASDLQE-KTVVIDAEYVRLH 422
           +  +    L+  + V++  E +   
Sbjct: 376 ETMYEIPSLENVEKVLVTKECIEDK 400



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 10/233 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
            P+EI++ L+ Y+IGQ  AK+A+++A+ N ++R      A    E+   NILL+GPTG G
Sbjct: 61  KPKEIMAILNDYVIGQNKAKKALSVAVYNHYKRIYGDKIASEDIEIQKSNILLLGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +++ LA++   PF   + T  TE GYVG +VE I+  LV  A   + +++R  +   
Sbjct: 121 KTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIVLKLVQAADFDIEKAQRGIIY-- 178

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                 + I          S TR+V  + ++   +   E  +      S           
Sbjct: 179 -----IDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTV-ANVPPSGGRKHPHQEFL 232

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            V   N+  +         K   +    K      + ES   +D+  ++   I
Sbjct: 233 KVDTTNILFILGGAFDGIEKIVQKRGKDKVLGFGAKIESKTDMDIGKLYSQVI 285


>gi|219849053|ref|YP_002463486.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus
           aggregans DSM 9485]
 gi|219543312|gb|ACL25050.1| Sigma 54 interacting domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 429

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 137/323 (42%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      +  D+E++ +     N  + G    G   L++  ++++          ++
Sbjct: 100 NHYKRVRAGARIDDVEISKS-----NILLIGPTGSGKTLLAQTMARILDVPFAIADATAL 154

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EG
Sbjct: 155 TEAG-YVGEDVENILLRLIQAADGDVERAQT-GIIYIDEIDKIARKSDNPSITRDVSGEG 212

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSR------ 308
           VQ+ LL ++EG                +Y   +T ++LFI  GAF      +++      
Sbjct: 213 VQQALLKILEGGVAHVPPLPGRKHPQQEYIPFDTTNVLFICGGAFEGITKIIAKRLRGKQ 272

Query: 309 -----------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL     +PE  GR PV V L+ L++     ILT+
Sbjct: 273 LIGFGTNPVSPLEEEGALLAQIIPDDLMHFGFIPEFVGRLPVIVALEPLSREAMLRILTE 332

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             + +I QY++L   +   L+FT DS++A+ D A++  +     GAR L++++E VL D+
Sbjct: 333 PRNAIIKQYQKLFALDHCELEFTPDSLEAIVDRAMSART-----GARALRSIVEEVLLDV 387

Query: 401 SFSASDLQ-EKTVVIDAEYVRLH 422
            F     +     +++AE ++  
Sbjct: 388 MFELPSQEHIGRCIVNAEVIQGR 410



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++   LD+Y+IGQ  AK A+A+A+ N ++R +  A + D E+   NILL+GPTG GK
Sbjct: 72  TPRKLRERLDQYVIGQDRAKVALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++      DE
Sbjct: 132 TLLAQTMARILDVPFAIADATALTEAGYVGEDVENILLRLIQAADGDVERAQTGIIYIDE 191

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FD 180
           + + A  +    I   + G+       ++    +            +      D +N   
Sbjct: 192 IDKIARKSDNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPFDTTNVLF 251

Query: 181 IPGGASVGILNL 192
           I GGA  GI  +
Sbjct: 252 ICGGAFEGITKI 263


>gi|325294781|ref|YP_004281295.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065229|gb|ADY73236.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 411

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 64/320 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    ++   ++E+  +     N  + G    G   L+   +K++          ++
Sbjct: 92  NHYKRIMSNEDTSEVELEKS-----NILLIGPTGSGKTLLARSLAKLLDVPFAIADATTL 146

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       I+  E  GI+++DE DKI  +     I   VS EG
Sbjct: 147 TEAG-YVGEDVENILLRLIQAADFDIEKAE-RGIIYIDEIDKISRKSENPSITRDVSGEG 204

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  +            +Y  I+T +ILFI  GAF               
Sbjct: 205 VQQALLKILEGTIANVPPQGGRKHPHQQYIQIDTSNILFICGGAFVGLEDIIAKRIGKGG 264

Query: 305 ------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                 P DL     +PE+ GR PV   L  L + D   IL + 
Sbjct: 265 MGFTADVKRNKLERSELLKHVEPDDLVKFGLIPELIGRLPVIATLNELTEEDLIRILKEP 324

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QY++L++ EG+ L+FT+ ++  +A  A+   +     GAR L+ +ME+++ D+ 
Sbjct: 325 KNALVKQYRKLLELEGVELEFTDGALREIAKEAIRRKT-----GARGLRAIMEKLMTDVM 379

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F     ++ K V+IDAE V+
Sbjct: 380 FEVPHRKDIKKVIIDAEAVK 399



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P+EI   LD+Y++GQ++AK+ +++A+ N ++R     D  + EL   NILL+GPTG GK
Sbjct: 64  TPKEIKEFLDQYVVGQEEAKKVLSVAVYNHYKRIMSNEDTSEVELEKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A   + ++ R     DE
Sbjct: 124 TLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAADFDIEKAERGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    + +                 D SN   
Sbjct: 184 IDKISRKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQQYIQIDTSNILF 243

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA VG+ ++        G G    ++ +  +    L   E D L+
Sbjct: 244 ICGGAFVGLEDIIAKRIGKGGMGFTADVKRNKLERSELLKHVEPDDLV 291


>gi|229025936|ref|ZP_04182328.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1272]
 gi|228735382|gb|EEL85985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus
           cereus AH1272]
          Length = 295

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 134/353 (37%), Gaps = 82/353 (23%)

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V              
Sbjct: 1   MAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDV-------------E 47

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
            AE+ I+                            EID +VA  S + S      G  V 
Sbjct: 48  KAEKGII-------------------------YIDEID-KVARKSENPSITRDVSGEGVQ 81

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
              L  L   V     +   +                     + +  D+  ++   G  F
Sbjct: 82  QALLKILEGTVASVPPQGGRKHP-----------------HQEFIQIDTTNILFICGGAF 124

Query: 249 LDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
            D  + I+ R  G   IG   E    D+      S V  +      D + F         
Sbjct: 125 -DGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPE------DLLRF--------- 168

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GR PV  +L+ L++     ILT  ++ L+ Q+++L++ + + L+F E ++
Sbjct: 169 ---GLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGAL 225

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
             +A  A+   +     GAR L++++E ++ D+ F     ++ +  ++  E V
Sbjct: 226 VEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETV 273


>gi|296413162|ref|XP_002836285.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630098|emb|CAZ80476.1| unnamed protein product [Tuber melanosporum]
          Length = 451

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 13/182 (7%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           I+  E  GIV LDEFDKI    S      +S EGVQ+ LL ++EG+++      INT   
Sbjct: 216 IRRAE-SGIVCLDEFDKIAKPKSPYGSKDISGEGVQQALLKIIEGTTL-----QINTKPE 269

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                    +     L+PEI GR P+   ++SL++     +LT+  + L+ QY EL    
Sbjct: 270 RPGGGLTPDLIS-FGLIPEIVGRIPIIAAVESLDEDMLVRVLTEPRNALLKQYTELFALS 328

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ L FT  ++  +A  A+ +N+     GAR L+TVMER+L D  F +     + V++  
Sbjct: 329 GVELRFTSPALRQIAKSAIAMNT-----GARGLRTVMERILSDAMFESPGSSIRYVLVTE 383

Query: 417 EY 418
             
Sbjct: 384 AV 385



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 51/266 (19%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------QQLPAD 46
             +PR +   LDR+++GQ   KR ++ A+ + ++R                      P  
Sbjct: 63  KLTPRALKQHLDRFVVGQNRPKRILSTAIYHHYKRTQQLQQRQEEQDELFRSSQAMGPQS 122

Query: 47  LRDELM--------------------------PKNILLVGPTGVGKTAISRRLARLAGAP 80
           L +E+                             N+L +GPTGVGKT + R LAR+   P
Sbjct: 123 LDEEISHQPRTVHVPPRGDRASIYDFSPLTIEKSNVLCLGPTGVGKTLMLRTLARVLEVP 182

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG 140
           F   + T FT+ GYVG + +  I  L+  A   +R +    V     ++  ++I      
Sbjct: 183 FSMSDCTPFTQAGYVGEDADVCIHRLLAAANWDIRRAESGIV----CLDEFDKIAKPKSP 238

Query: 141 KTATSNTREVFRK-KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +   + E  ++  L+  E +  +I+ +       ++   I  G    I+    + + V
Sbjct: 239 YGSKDISGEGVQQALLKIIEGTTLQINTKPERPGGGLTPDLISFGLIPEIVGRIPIIAAV 298

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESD 225
                   +R+ + +    L++  ++
Sbjct: 299 ESLDEDMLVRV-LTEPRNALLKQYTE 323


>gi|295658937|ref|XP_002790028.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb01]
 gi|226282111|gb|EEH37677.1| ATP-dependent Clp protease ATP-binding subunit clpX
           [Paracoccidioides brasiliensis Pb01]
          Length = 506

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 140/407 (34%), Gaps = 83/407 (20%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LPADLRDE---- 50
            +P+ +   LD++++GQ  AK+ +++A+ N ++R Q            +    R E    
Sbjct: 96  LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVES 155

Query: 51  -------------------------------------LMPKNILLVGPTGVGKTAISRRL 73
                                                L   NILL+GP+GVGKT +++ L
Sbjct: 156 HPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTL 215

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T  T+ GY+G + +  +  L+  A   V ++ R     DEV      
Sbjct: 216 ARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAERGIICLDEV------ 269

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
              ++I  A V      +   V +  L+  E +  +I  +    +              G
Sbjct: 270 ---DKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSG 326

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES---DRLIDMDTVHRDSIQMVEN-- 243
               S   S        K    +V+      +   +      + MD + R SI   +   
Sbjct: 327 SFGGSSFSSPAPPGSSGKAEVYNVRTDNILFIFSGAFVGLNKVIMDRISRGSIGFGQPVR 386

Query: 244 ---YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
                    +      +       G + E + +  LP    + + +  GS + +   F  
Sbjct: 387 ALTSSFSSQNPSQGASSPPIPILPGSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF-- 444

Query: 301 SGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                +  P DL     +PE+ GR P+   L  L       ILT+  
Sbjct: 445 -NPLDLLTPPDLQTYGFIPELVGRIPITTALSQLTHRLLLRILTEPR 490


>gi|63079330|gb|AAY29673.1| predicted ATP-dependent specificity component of the Clp protease
           [Bifidobacterium breve UCC2003]
          Length = 453

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 154/377 (40%), Gaps = 87/377 (23%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
            +  + VA+    +    E++E A           L G    +  +   R + +    +D
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ---------LDGANGNAALQSAGRAR-KSQRAND 131

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
              D+EVA +     N  + G   VG   L++  ++VM          ++ +        
Sbjct: 132 PLSDVEVAKS-----NILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEA------- 179

Query: 223 ESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREGVQR 273
                 D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EGVQ+
Sbjct: 180 -GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQ 238

Query: 274 DLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF------------------ 304
            LL ++EG+  S                ++T  ILFI  GAF                  
Sbjct: 239 ALLKILEGTIASVPLEGTRKHKEQDTVQMDTCGILFICGGAFVGLTDIVRKRLGRRETGF 298

Query: 305 ----HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
               H +   D                LLPE  GR PV   LK L   D   ILT   + 
Sbjct: 299 GANWHDADLKDEELLKQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTEILTQPANA 358

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY++L   +G+ L+FT+ ++ A+AD A+        IGAR L++++ER L+D  F  
Sbjct: 359 LIKQYRKLFAVDGVDLEFTDQAVQAIADTAIK-----QGIGARGLRSIIERTLQDTMFQL 413

Query: 405 SDLQE-KTVVIDAEYVR 420
             L++ K VV+D   V 
Sbjct: 414 PSLEDVKQVVVDKASVE 430



 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 42/265 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNAALQSAGRA 123

Query: 44  -------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                        E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  TE GYVG
Sbjct: 124 RKSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVG 183

Query: 97  RNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREV 150
            +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+       ++
Sbjct: 184 DDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQALLKI 243

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
               +    +       E      D        G +   + L+++  K +   R+     
Sbjct: 244 LEGTIASVPLEGTRKHKEQDTVQMDTCGILFICGGAF--VGLTDIVRKRL-GRRETGFGA 300

Query: 211 SVQKCYPELMRDESDRLIDMDTVHR 235
           +      +L  +E  + ++ D +  
Sbjct: 301 NWHDA--DLKDEELLKQVNADDLAE 323


>gi|50954516|ref|YP_061804.1| ATP-dependent protease ATP-binding subunit [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|61211467|sp|Q6AFZ6|CLPX_LEIXX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|50950998|gb|AAT88699.1| ATP-dependent Clp protease ATP binding subunit [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 424

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 66/346 (19%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEI---SDKEIDIEVADTSSDISNFDIPGGASV 187
           EE ++     K + +       K++R  +    +D   D+E+A +     N  + G    
Sbjct: 74  EEYVIGQEQAKRSLAVAVYNHYKRVRARQAITAADAIDDVEIAKS-----NILLIGPTGC 128

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G   L++  ++ +          ++ +    +  D  + L+ +       ++  E  GI+
Sbjct: 129 GKTYLAQTLARRLNVPFAVADATALTEAG-YVGEDVENILLKLIQAADYDVKRAET-GII 186

Query: 248 FLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTD 294
           ++DE DKI  +     I   VS EGVQ+ LL ++EG+  S            ++  I+T 
Sbjct: 187 YIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTT 246

Query: 295 HILFIASGAF--------------------------------HVSRPADL-----LPEIQ 317
           ++LFI +GAF                                    P DL     +PE  
Sbjct: 247 NVLFIVAGAFAGLEDIISNRAGKKGIGFGAPLHSKGDDINLFSEVLPEDLHKFGLIPEFI 306

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR PV   +  L++     ILT+ ++ L+ QY+ + + +G+ L+F   +++A+AD+AV  
Sbjct: 307 GRLPVVTTVTQLDQDALMQILTEPKNALVRQYQRMFELDGVQLEFDHAALEAIADLAVLR 366

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
            +     GAR L+ +ME VL  I F      E   VV+  E V  +
Sbjct: 367 KT-----GARGLRAIMEEVLGPIMFEVPSSSEVARVVVTKEAVLEN 407



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-------RDELMPKNI 56
           F+   P+EI   L+ Y+IGQ+ AKR++A+A+ N ++R +    +         E+   NI
Sbjct: 61  FDLPKPKEIFGFLEEYVIGQEQAKRSLAVAVYNHYKRVRARQAITAADAIDDVEIAKSNI 120

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V+ 
Sbjct: 121 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKR 180

Query: 117 SR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           +       DEV + A       I   + G+       ++    +                
Sbjct: 181 AETGIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 240

Query: 172 TSSDISN 178
              D +N
Sbjct: 241 IQIDTTN 247


>gi|108563744|ref|YP_628060.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           pylori HPAG1]
 gi|107837517|gb|ABF85386.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1]
          Length = 307

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 57/304 (18%)

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
              SN  + G    G   +++  +K +          S+ +    +  D  + L  +   
Sbjct: 1   MSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAG-YVGEDVENILTRLLQA 59

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK---- 287
              ++Q  +  GIVF+DE DKI        I   VS EGVQ+ LL +VEGS V+      
Sbjct: 60  SDWNVQKAQK-GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG 118

Query: 288 -------YGSINTDHILFIASGAF--------------------------------HVSR 308
                  +  I+T  ILFI +GAF                                H+ +
Sbjct: 119 RKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQ 178

Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
             DL     +PE+ GR PV   L S++      IL   ++ LI QY++L K + + L F 
Sbjct: 179 THDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE 238

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           E++I  +A +A+   +     GAR L+ ++E    DI F    L+   V I  + V    
Sbjct: 239 EEAIKEIAQLALERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 293

Query: 424 GDFP 427
               
Sbjct: 294 EPLI 297



 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 5/183 (2%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +
Sbjct: 1   MSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 60

Query: 111 INIVRESRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              V+++++  V     ++ S  +E R I   + G+       ++    L +        
Sbjct: 61  DWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRK 120

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
             E      D S+       +   L                + +MS ++    L   ++ 
Sbjct: 121 HPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 180

Query: 226 RLI 228
            L+
Sbjct: 181 DLV 183


>gi|157828915|ref|YP_001495157.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933640|ref|YP_001650429.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           rickettsii str. Iowa]
 gi|166215199|sp|A8GTC4|CLPX_RICRS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044145|sp|B0BUW3|CLPX_RICRO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157801396|gb|ABV76649.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908727|gb|ABY73023.1| ClpX [Rickettsia rickettsii str. Iowa]
          Length = 425

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 134/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYIQSGNNDVEL-------NKSNILLIGPTGSGKTVLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIASEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L   + +++ +A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDDSALETIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVEPIMT 406



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYIQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++++     D
Sbjct: 122 KTVLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|149923965|ref|ZP_01912351.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
 gi|149815197|gb|EDM74746.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica
           SIR-1]
          Length = 416

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 140/332 (42%), Gaps = 68/332 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    I V ++  +     SN  + G    G   L++  ++++    
Sbjct: 79  QERAKKIISVAVYNHYKRINVKNSGDEPELQKSNILLIGPTGSGKTLLAQTLARILDVPF 138

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGN 262
                 S+ +     + ++ + +I   ++ +++   VE    GI+++DE DKI  +    
Sbjct: 139 AIADATSLTEA--GYVGEDVENIIV--SLLQNADHDVEKAQRGIIYIDEIDKIARKGDNP 194

Query: 263 GI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----- 304
            I   VS EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF     
Sbjct: 195 SITRDVSGEGVQQALLKILEGTIASVPPKGGRKHPQQDFLQVDTTNILFICGGAFAGMED 254

Query: 305 --------------------HVSRPAD--------------LLPEIQGRFPVRVHLKSLN 330
                                  R  D              L+PE  GR PV   LK L+
Sbjct: 255 IIESRVSAKTMGFGATLQEKKEKRHWDLLQKVQSEDLMKFGLIPEFIGRMPVVAPLKELD 314

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           +     ILT+ ++ L+ QYK L++ +G+ L F ED++ A+A  A          GAR L+
Sbjct: 315 EEALVSILTEPKNALVKQYKRLLRMDGVELTFAEDALHAIAKTAKE-----QRAGARGLR 369

Query: 391 TVMERVLEDISFSASDLQ-EKTVVIDAEYVRL 421
           +++ER + D+ +    +     V I+ E +  
Sbjct: 370 SILERAMLDVMYDIPSVDNITEVHINPETIIE 401



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-LPADLRDELMPKNILLVGPTGVGK 66
            P++I   LD Y++GQ+ AK+ +++A+ N ++R     +    EL   NILL+GPTG GK
Sbjct: 64  KPKDIRVILDDYVVGQERAKKIISVAVYNHYKRINVKNSGDEPELQKSNILLIGPTGSGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE II  L+  A + V +++R     DE
Sbjct: 124 TLLAQTLARILDVPFAIADATSLTEAGYVGEDVENIIVSLLQNADHDVEKAQRGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A       I   + G+       ++    +            +      D +N   
Sbjct: 184 IDKIARKGDNPSITRDVSGEGVQQALLKILEGTIASVPPKGGRKHPQQDFLQVDTTNILF 243

Query: 181 IPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           I GGA  G+ ++ E  + +K MG G   + +   +  +  L + +S+ L+
Sbjct: 244 ICGGAFAGMEDIIESRVSAKTMGFGATLQEKKEKRH-WDLLQKVQSEDLM 292


>gi|42525081|ref|NP_970461.1| ATP-dependent protease ATP-binding subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|61211515|sp|Q6MH12|CLPX_BDEBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|39577292|emb|CAE81115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bdellovibrio
           bacteriovorus HD100]
          Length = 431

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 124/306 (40%), Gaps = 61/306 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           AD     SN  + G    G   L++  +KV+          ++ +    +  D  + +++
Sbjct: 106 ADVEMQKSNILLIGPTGSGKTLLAQTIAKVLNVPFAMADATTLTEAG-YVGEDVENVVLN 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS-- 285
           +       ++  +  G++++DE DKI  +     I   VS EGVQ+ LL ++EG+  +  
Sbjct: 165 LLQASDYDVEKAQK-GVIYVDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANLP 223

Query: 286 ---------TKYGSINTDHILFIASGAF-------------------------------- 304
                     ++  ++T +ILFI  GAF                                
Sbjct: 224 PKGGRKHPQQEFIQVDTTNILFIVGGAFVGLDKIIEQRTTNKTMGIAADIRTSEEVEKSA 283

Query: 305 ---HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PE  GR P    L  L++     IL   ++ +  QY++L   E
Sbjct: 284 NLLSKVEPDDLSKFGLIPEFIGRLPAIAVLAPLDEEALLDILVRPKNAITKQYQKLFSFE 343

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415
           G+ L FTE ++ A+A +A+   +     GAR L+ V+E  + D+ +        K VVID
Sbjct: 344 GVELKFTEKALRAVAQMALKRKT-----GARGLRGVLETAMLDVMYDIPSKNNVKEVVID 398

Query: 416 AEYVRL 421
              +  
Sbjct: 399 ENVINE 404



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTG 63
            P +I + LD Y+IGQ  AK+ +A+A+ N ++R    +        E+   NILL+GPTG
Sbjct: 63  KPSDIKTYLDDYVIGQTQAKKTLAVAVHNHYKRVNAMSGGKKSADVEMQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ +A++   PF   + T  TE GYVG +VE ++ +L+  +   V ++++    
Sbjct: 123 SGKTLLAQTIAKVLNVPFAMADATTLTEAGYVGEDVENVVLNLLQASDYDVEKAQKGVIY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + +  +    I   + G+       ++    + +          +      D +N
Sbjct: 183 VDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANLPPKGGRKHPQQEFIQVDTTN 242

Query: 179 F-DIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
              I GGA VG+  + E    +K MG     +    V+K    L + E D L
Sbjct: 243 ILFIVGGAFVGLDKIIEQRTTNKTMGIAADIRTSEEVEKSANLLSKVEPDDL 294


>gi|150016210|ref|YP_001308464.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082489|sp|A6LT28|CLPX_CLOB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|149902675|gb|ABR33508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           beijerinckii NCIMB 8052]
          Length = 429

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 65/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    + ++ID+E++ +     N  + G    G   L++  ++ +          ++
Sbjct: 90  NHYKRINTNKEDIDVELSKS-----NILLLGPTGSGKTLLAQTLARFLNVPFAIADATTL 144

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS EG
Sbjct: 145 TEAG-YVGEDVENILLKLIQNADYDVEKAE-RGIIYIDEIDKIARKSENPSITRDVSGEG 202

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  S            ++  INT +ILFI  GAF               
Sbjct: 203 VQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILFICGGAFDGVDKIIENRTRKSS 262

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  PADL     +PE  GR P+ V L+SL+K     ILT 
Sbjct: 263 MGFGAQIQAKHEKDVGSLLKEIMPADLLKFGLIPEFVGRLPILVTLESLDKEALIQILTK 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QYK+L + + + L+F E S+ A+A+ A++  +     GAR L+ ++E ++ +I
Sbjct: 323 PKNALVKQYKKLFELDDVKLEFDEKSLIAIAEEAISRQT-----GARGLRAIIEDIMNEI 377

Query: 401 SFSAS-DLQEKTVVIDAEYVRLH 422
            +    D +   V+I  E ++  
Sbjct: 378 MYEIPSDNRITNVIITEEAIKEK 400



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ+ AK+++A+A+ N ++R      D+  EL   NILL+GPTG GK
Sbjct: 62  KPNEIKEYLDSYVIGQERAKKSLAVAVYNHYKRINTNKEDIDVELSKSNILLLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 122 TLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAERGIIYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   + SN   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTSNILF 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA  G+  + E  ++    G   +I+   +K    L+++
Sbjct: 242 ICGGAFDGVDKIIENRTRKSSMGFGAQIQAKHEKDVGSLLKE 283


>gi|309388895|gb|ADO76775.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Halanaerobium
           praevalens DSM 2228]
          Length = 423

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 61/315 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++ + D     SN  + G    G   +++  +K++          S+ +    +  D  +
Sbjct: 102 NLMIDDVELQKSNIMMIGPTGCGKTLMAQTLAKIIDVPIAITDATSLTEAG-YVGEDVEN 160

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 161 ILLKLIQAADYDVEKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTV 219

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  I+T +ILFIA GAF                            
Sbjct: 220 ASVPPQGGRKHPHQEFIQIDTTNILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTQAED 279

Query: 306 --------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                     +P DL     +PE  GR PV+V L  L   D   I+ +  + LI QY++ 
Sbjct: 280 ENIGDTLKHIQPQDLLHYGLIPEFIGRMPVQVTLDQLEAEDMVRIMKEPRNALIKQYEKF 339

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKT 411
              + I L+FT++++ ++A  A++ N+     GAR L++V+E  + DI +      + K 
Sbjct: 340 FAMDEIELEFTDEALKSIAAKALDRNT-----GARGLRSVVENAVLDIMYDLPSRPEIKK 394

Query: 412 VVIDAEYVRLHIGDF 426
            +I+ + +  +    
Sbjct: 395 CIINEQVINENADPI 409



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 9/231 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD+Y+IGQ+ AK+++++A+ N ++R      + D EL   NI+++GPTG GK
Sbjct: 66  KPKEIKEYLDQYVIGQERAKKSLSVAVYNHYKRVNSNLMIDDVELQKSNIMMIGPTGCGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LA++   P    + T  TE GYVG +VE I+  L+  A   V ++ +     DE
Sbjct: 126 TLMAQTLAKIIDVPIAITDATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYVDE 185

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 186 IDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTTNILF 245

Query: 181 IPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I GGA  G+  L +  +  KVMG G   K +   +     L   +   L+ 
Sbjct: 246 IAGGAFDGLEKLIDSRISEKVMGFGADIKTQAEDENIGDTLKHIQPQDLLH 296


>gi|283781925|ref|YP_003372680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula
           staleyi DSM 6068]
 gi|283440378|gb|ADB18820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula
           staleyi DSM 6068]
          Length = 428

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 71/330 (21%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
               E++IE        SN  + G    G   L+   +++M          ++ +     
Sbjct: 113 FEGSEVEIEK-------SNILMVGPTGSGKTLLARTLARIMNVPFAIGDATTLTEAGYVG 165

Query: 220 MRDESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
              E+   +L+       ++ Q     G++++DE DKI        I   VS EGVQ+ L
Sbjct: 166 EDVENLLLKLLHAADFDLEAAQR----GVLYIDEIDKIGKTSQNVSITRDVSGEGVQQAL 221

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------------H 305
           L ++EG+  +            +Y  ++T +ILFI  G F                    
Sbjct: 222 LKMLEGTVANVPPQGGRKHPEQQYIQMDTTNILFICGGTFVGLEDIIRKRLGRKTLGFGQ 281

Query: 306 VSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           ++  +D                    L+PE+ GR PV   L+ L+ +    +LT+ ++ L
Sbjct: 282 MTGHSDEATTSEILGQATTEDILEFGLIPELVGRLPVLTSLRPLDHAGLVKVLTEPKNAL 341

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY+ L + E   L+F++ +++A+A  A+   +     GAR L++++E  + DI F   
Sbjct: 342 LRQYQTLFEMEDSHLEFSQGALEAIARRALEKGT-----GARGLRSIVEEAMVDIMFELP 396

Query: 406 DL-QEKTVVIDAEYVRLHIGDFPSETDMYH 434
           D  +    VID E +      FP +  +  
Sbjct: 397 DQPKGSKFVIDEEVILGRRKLFPMQEPISK 426



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66
           +PREIV+ LD+Y++GQ  +KR +++A+ N ++R  L       E+   NIL+VGPTG GK
Sbjct: 76  TPREIVAHLDQYVVGQMGSKRVLSVAMHNHYKRLSLGFEGSEVEIEKSNILMVGPTGSGK 135

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   +  ++R     DE
Sbjct: 136 TLLARTLARIMNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDLEAAQRGVLYIDE 195

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + +    +    I   + G+       ++    + +          E      D +N   
Sbjct: 196 IDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQMDTTNILF 255

Query: 181 IPGGASVGILNL 192
           I GG  VG+ ++
Sbjct: 256 ICGGTFVGLEDI 267


>gi|319892720|ref|YP_004149595.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162416|gb|ADV05959.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464246|gb|ADX76399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus pseudintermedius ED99]
          Length = 420

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 63/358 (17%)

Query: 118 RRDEVREQASINAE----ERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
             +  ++QA    E    + I+D L          ++     + +     +++  +  D 
Sbjct: 47  EEELNQQQAEELTELPTPKEIMDQLNSYVIGQEKAKKSLAVAVYNHYKRVQQLGPKDDDV 106

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
               SN  + G    G   L++  ++ +          S+ +    +  D  + L+ +  
Sbjct: 107 ELQKSNVALIGPTGSGKTLLAQTLARTLNVPFAIADATSLTEAG-YVGEDVENILLRLIQ 165

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
                I   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S     
Sbjct: 166 AADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQG 224

Query: 287 -------KYGSINTDHILFIASGAF--------------------------------HVS 307
                  ++  I+T +ILFI  GAF                                   
Sbjct: 225 GRKHPNQEFIQIDTTNILFILGGAFDGINEVIKRRLGEKVIGFASNEASNFDEASLLEQI 284

Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           RP DL     +PE  GR P+  +L++L+    + ILT  ++ L+ QY ++++ + + L+F
Sbjct: 285 RPEDLQTYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDDVALEF 344

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYV 419
           T++++ A+++ A+   +     GAR L++++E  L DI +     +    VVI  E +
Sbjct: 345 TDEALAAISEKAIERKT-----GARGLRSIIEEALIDIMYDIPSTENVAKVVITKETI 397



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           +LT   +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R Q   P D   EL   N+ L+
Sbjct: 57  ELTELPTPKEIMDQLNSYVIGQEKAKKSLAVAVYNHYKRVQQLGPKDDDVELQKSNVALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 117 GPTGSGKTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAADFDIDKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++                        
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   +N
Sbjct: 237 DTTNILFILGGAFDGIN 253


>gi|269120919|ref|YP_003309096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
 gi|268614797|gb|ACZ09165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sebaldella
           termitidis ATCC 33386]
          Length = 408

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 59/306 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V D     SN  + G    G   L++  ++++          ++ +    +  D  + L+
Sbjct: 104 VDDIELQKSNVLLMGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG-YVGDDVENVLL 162

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SV 284
            +       I   + +GI+++DE DKI  +     I   VS EGVQ+ LL +VEG+  SV
Sbjct: 163 KLIKAADYDINAAQ-HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIVEGTVSSV 221

Query: 285 STKYG---------SINTDHILFIASGAFHVSR--------------------------- 308
             + G          I+T  ILFI  GAF                               
Sbjct: 222 PPQGGRKHPNQEMIEIDTKDILFIVGGAFEGLEEKIENRLNIKRVGFGVDHTREKLDSLT 281

Query: 309 ------PAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                 P D     L+PE+ GR P+   L  L++     ILT+ +++L+ QYK+ ++ E 
Sbjct: 282 IFKNVLPEDLIKFGLIPELVGRVPIITALSGLDEEALVKILTEPKNSLVKQYKKYLELEN 341

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDA 416
           + L+F +D+I+ +A +A         IGAR L+++ME ++ D+ +     +  K V+I  
Sbjct: 342 VSLEFKKDAIEEIAKMAFERK-----IGARGLRSIMEGIMIDVMYDIPSKKNIKKVIITK 396

Query: 417 EYVRLH 422
           E V+  
Sbjct: 397 EAVKNK 402



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
           + P EI  +LD YIIGQ +AK+ +A+++ N ++R        D  EL   N+LL+GPTG 
Sbjct: 63  YKPSEIKKKLDDYIIGQDEAKKVLAVSVYNHYKRITHKLQNVDDIELQKSNVLLMGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A   +  ++      
Sbjct: 123 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLLKLIKAADYDINAAQHGIIYI 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A  +    I   + G+       ++    +                   D  + 
Sbjct: 183 DEIDKIARKSENMSITRDVSGEGVQQALLKIVEGTVSSVPPQGGRKHPNQEMIEIDTKDI 242

Query: 180 -DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             I GGA  G+    E    +   G                     + LI
Sbjct: 243 LFIVGGAFEGLEEKIENRLNIKRVGFGVDHTREKLDSLTIFKNVLPEDLI 292


>gi|299140334|ref|ZP_07033497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX8]
 gi|298597668|gb|EFI53843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidobacterium sp. MP5ACTX8]
          Length = 428

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 69/308 (22%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 116 SNILLVGPTGSGKTLLAQTLAKMLDVPFAIVDATTLTEAG-YVGEDVENILLKLLQAAEG 174

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            +   +  GI+++DE DKI  +D    I   VS EGVQ+ LL L+EG+  S         
Sbjct: 175 DVTKAQQ-GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVASVPPQGGRKH 233

Query: 287 ---KYGSINTDHILFIASGAF--------------------------------------- 304
              ++  ++T +ILFI  GAF                                       
Sbjct: 234 PHQEFTIVDTTNILFICGGAFVGLEKVIGRRIGKKALGFKAISDPNAKEADVTPIRAQRD 293

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                 + P DL     +PE  GR PV   L  L+++    ILT   + ++ QY +L   
Sbjct: 294 SELLRKAEPQDLLKYGLIPEFVGRLPVLGILDELDEAALIEILTKPRNAILKQYAKLFDY 353

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           EG+ + +T+D+  A+A  A+        +GAR L+ ++E ++ D+ +    + + K ++I
Sbjct: 354 EGVKVIWTDDAARAIAREALTRK-----VGARGLRMILEELMLDLMYHVPGNKKVKELII 408

Query: 415 DAEYVRLH 422
             E V   
Sbjct: 409 TEEMVLSR 416



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P E+ + LD Y+IGQ+  K+ +A+A+ N ++R Q+        EL   NILLVGPTG G
Sbjct: 68  KPAEVKAFLDEYVIGQEITKKKLAVAVYNHYKRVQMNRTRGNDVELAKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT +++ LA++   PF  V+ T  TE GYVG +VE I+  L+  A   V ++++
Sbjct: 128 KTLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENILLKLLQAAEGDVTKAQQ 181


>gi|291456563|ref|ZP_06595953.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
 gi|291381840|gb|EFE89358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium breve DSM 20213]
          Length = 453

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 153/377 (40%), Gaps = 87/377 (23%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
            +  + VA+    +    E++E A           L G       +   R + +    +D
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ---------LDGANGNVALQSAGRAR-KSQRAND 131

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
              D+EVA +     N  + G   VG   L++  ++VM          ++ +        
Sbjct: 132 PLSDVEVAKS-----NILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEA------- 179

Query: 223 ESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREGVQR 273
                 D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EGVQ+
Sbjct: 180 -GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQ 238

Query: 274 DLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF------------------ 304
            LL ++EG+  S                ++T  ILFI  GAF                  
Sbjct: 239 ALLKILEGTIASVPLEGTRKHKEQDTVQMDTRGILFICGGAFVGLTDIVRKRLGRRETGF 298

Query: 305 ----HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
               H +   D                LLPE  GR PV   L+ L   D   ILT   + 
Sbjct: 299 GANWHDADLKDEELLKQVNADDLAEFGLLPEFIGRLPVTSVLEELTVDDLTEILTQPANA 358

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY++L   +G+ L+FT+ ++ A+AD A+        IGAR L++++ER L+D  F  
Sbjct: 359 LIKQYRKLFAVDGVDLEFTDQAVQAIADTAIK-----QGIGARGLRSIIERTLQDTMFQL 413

Query: 405 SDLQE-KTVVIDAEYVR 420
             L++ K VV+D   V 
Sbjct: 414 PSLEDVKQVVVDKASVE 430



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 42/265 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNVALQSAGRA 123

Query: 44  -------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
                        E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  TE GYVG
Sbjct: 124 RKSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVG 183

Query: 97  RNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREV 150
            +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+       ++
Sbjct: 184 DDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQALLKI 243

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
               +    +       E      D        G +   + L+++  K +   R+     
Sbjct: 244 LEGTIASVPLEGTRKHKEQDTVQMDTRGILFICGGAF--VGLTDIVRKRL-GRRETGFGA 300

Query: 211 SVQKCYPELMRDESDRLIDMDTVHR 235
           +      +L  +E  + ++ D +  
Sbjct: 301 NWHDA--DLKDEELLKQVNADDLAE 323


>gi|313143532|ref|ZP_07805725.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter
           cinaedi CCUG 18818]
 gi|313128563|gb|EFR46180.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter
           cinaedi CCUG 18818]
          Length = 424

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 57/304 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K +          S+ +    +  D  + L  +      
Sbjct: 120 SNILLIGPTGSGKTLMAQTLAKFLDIPIAISDATSLTEAG-YVGEDVENILTRLLQAADG 178

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 179 DVKKAEK-GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 237

Query: 288 ----YGSINTDHILFIASGAF--------------------------------HVSRPAD 311
               +  I+T  ILF+  GAF                                    P D
Sbjct: 238 PNQDFIQIDTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDD 297

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PE+ GR  +   L  + K     ILT  ++ L+ QY+++ + +G  L F + +
Sbjct: 298 LISYGLIPELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGA 357

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           I+A+A++A++  +     GAR L+ +ME  + D+ +   +L+   + I  E +       
Sbjct: 358 IEAIAELAISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECITDKQAPL 412

Query: 427 PSET 430
             + 
Sbjct: 413 MVKK 416



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 17/235 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------LRDELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ  AK+  ++A+ N ++R               EL   NILL+GP
Sbjct: 68  SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 127

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +  
Sbjct: 128 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEKGI 187

Query: 122 V----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           V     ++ S  +E R I   + G+       ++    + +                 D 
Sbjct: 188 VFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDT 247

Query: 177 SNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +   + GGA  G+ ++ +  L   V+G   +KK +    +    L   E D LI
Sbjct: 248 KDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGK---SEESALLEYVEPDDLI 299


>gi|238651008|ref|YP_002916864.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
 gi|259491268|sp|C4K2L5|CLPX_RICPU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238625106|gb|ACR47812.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii
           str. Rustic]
          Length = 425

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIASEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNMDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L   + +++ +A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDDSALETIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+ + V I  E V   +    +
Sbjct: 377 DSMYKVAELKRQRVTITKEVVNGLVEPIMT 406



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 16/258 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA +GI ++    +     G    + M  +K        E  + ++++ + +  + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFAANVNMDKEK-----NNSEILKSLEIEDLTKFGLI 296

Query: 240 MVENYG---IVFLDEFDK 254
                    +  LDE DK
Sbjct: 297 PEFIGRLPIVTTLDELDK 314


>gi|284036069|ref|YP_003385999.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74]
 gi|283815362|gb|ADB37200.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74]
          Length = 410

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 135/330 (40%), Gaps = 72/330 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   + +D  + IE        SN  + G    G   L+   +K++          
Sbjct: 88  HYKRLMQPKTNDD-VTIEK-------SNIIMVGETGTGKTYLARSIAKILEVPFCIADAT 139

Query: 211 SVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
            + +        E+   RL+     + ++ +     GIV++DE DKI  +     I   V
Sbjct: 140 VITEAGYVGEDVETILTRLLQAADYNVEAAER----GIVYIDEIDKIARKSDNPSITRDV 195

Query: 267 SREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF-----HVSRP- 309
           S EGVQ+ LL L+EGS V+               ++NT++ILFI  GAF     H+++  
Sbjct: 196 SGEGVQQALLKLLEGSVVNVPPQGGRKHPDQRLIALNTENILFICGGAFDGIERHITKRI 255

Query: 310 ---------------------------------ADLLPEIQGRFPVRVHLKSLNKSDFRL 336
                                              L+PE+ GR PV  HL+ L++     
Sbjct: 256 NTRPIGFSGDRRLNDTFERGHLMRYISALDLKSFGLIPELIGRLPVLTHLEPLDRDALMQ 315

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ +  QY +L + EGI L +   +++ + D A+        +GAR L+++ E +
Sbjct: 316 ILTEPKNAITKQYNKLFQMEGITLHWDPSALNYIVDQALQYG-----LGARGLRSICESI 370

Query: 397 LEDISFSASDLQE-KTVVIDAEYVRLHIGD 425
           + D  F        K + +  EY R   G 
Sbjct: 371 ITDAMFEMPSQTGVKELTVSLEYAREKFGK 400



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILL 58
           ++L  N   P ++   LD+Y+IGQ DAK+++ +A+ N ++R   P    D  +   NI++
Sbjct: 51  VELNINLIKPIDMKRHLDQYVIGQDDAKKSITVAVYNHYKRLMQPKTNDDVTIEKSNIIM 110

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VG TG GKT ++R +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + 
Sbjct: 111 VGETGTGKTYLARSIAKILEVPFCIADATVITEAGYVGEDVETILTRLLQAADYNVEAAE 170

Query: 119 RDEV 122
           R  V
Sbjct: 171 RGIV 174


>gi|189502524|ref|YP_001958241.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Amoebophilus asiaticus 5a2]
 gi|189497965|gb|ACE06512.1| hypothetical protein Aasi_1179 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 403

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 140/334 (41%), Gaps = 80/334 (23%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR     +  I IE        SN  + G    G   L+   +K++         +
Sbjct: 85  HYKRLRQSYEEEDGITIEK-------SNILLLGETGTGKTYLARTLAKLLH--------V 129

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
                   ++ +      D++++    +Q  E        GIV++DE DKI  +     I
Sbjct: 130 PFCMADATVLTEAGYVGEDVESILTRLLQAAEYDVAAAERGIVYIDEIDKIARKGDNPSI 189

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL L+EG+ V+            K   +NT++ILFI  GAF       
Sbjct: 190 TRDVSGEGVQQALLKLLEGTIVNVPPQGGRKHPDQKMIPVNTENILFICGGAFEGMDKII 249

Query: 305 -----------------------------HVS----RPADLLPEIQGRFPVRVHLKSLNK 331
                                        HVS    R   L+PE+ GR P+  +L  ++ 
Sbjct: 250 SKRLNAGTLGFDIAQSRSQGTRETSNLLKHVSSNDLRVYGLIPELIGRLPIISYLNPIDA 309

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
              + ILT+ +++LI QY +L   + + L  TED++D + + A++L      +GAR L++
Sbjct: 310 KALKSILTEPKNSLIKQYTKLFAMDNVQLTITEDALDYMVEQALSLK-----LGARGLRS 364

Query: 392 VMERVLEDISFSASDLQEKTV-VIDAEYVRLHIG 424
           + E V+ D  F  S  +E  V +ID  Y    + 
Sbjct: 365 ICEAVIMDAMFELSSEKEAAVLLIDKNYAISKLS 398



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGV 64
            +P+EI + LD+Y+IGQ  AK+ +A+A+ N ++R +   +  D +     NILL+G TG 
Sbjct: 55  LTPKEIKAYLDQYVIGQDVAKKTLAVAVYNHYKRLRQSYEEEDGITIEKSNILLLGETGT 114

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  + R     
Sbjct: 115 GKTYLARTLAKLLHVPFCMADATVLTEAGYVGEDVESILTRLLQAAEYDVAAAERGIVYI 174

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +          +      +  N 
Sbjct: 175 DEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTIVNVPPQGGRKHPDQKMIPVNTENI 234

Query: 180 DIPGGASVGILN 191
               G +   ++
Sbjct: 235 LFICGGAFEGMD 246


>gi|229815147|ref|ZP_04445484.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM
           13280]
 gi|229809377|gb|EEP45142.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 127/309 (41%), Gaps = 63/309 (20%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +D +V    S   N  + G    G   L++  ++V+          ++ +    +  D  
Sbjct: 153 VDEDVELAKS---NILLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAG-YVGEDVE 208

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS 282
           + L+ + T     I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+
Sbjct: 209 NILLKLITAADGDIDRAQI-GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGT 267

Query: 283 SVST-----------KYGSINTDHILFIASGAF--------------------------- 304
             S            +   I+T +ILFI  GAF                           
Sbjct: 268 VASVPPTGGRKHPQQELLQIDTTNILFICGGAFVGLDKIISDRVGNQGIGFNSEIAGPTS 327

Query: 305 -------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P DL     +PE  GR PV    ++L++ D   ILT+ ++ ++ QY+ +
Sbjct: 328 KDENVLLRQVLPEDLNNFGMIPEFIGRTPVITQTQALSEDDLVGILTEPKNAVVKQYRRM 387

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-T 411
              EG+ L F  D++  +A  A+   +     GAR L+++ E +L+   F     +    
Sbjct: 388 FSLEGVELVFEPDALHEIARKALARKT-----GARGLRSICEELLQQTMFDLPSEEGVLR 442

Query: 412 VVIDAEYVR 420
           VV+ A  VR
Sbjct: 443 VVVTAAAVR 451



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56
           +P EI   L +Y++GQ+DAKRA+++A+ N +RR  +   + D           EL   NI
Sbjct: 105 TPHEIYDALSQYVMGQEDAKRAMSVAVYNHYRRVLMGDTVEDSLGAHAVDEDVELAKSNI 164

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  
Sbjct: 165 LLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLITAADGDIDR 224

Query: 117 SRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           ++      DE+ + A       I   + G+       ++    +     +      +   
Sbjct: 225 AQIGIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQEL 284

Query: 172 TSSDISNFDIPGGASVGILN 191
              D +N     G +   L+
Sbjct: 285 LQIDTTNILFICGGAFVGLD 304


>gi|224437060|ref|ZP_03658041.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           cinaedi CCUG 18818]
          Length = 427

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 57/304 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  +K +          S+ +    +  D  + L  +      
Sbjct: 123 SNILLIGPTGSGKTLMAQTLAKFLDIPIAISDATSLTEAG-YVGEDVENILTRLLQAADG 181

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
            ++  E  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS V+         
Sbjct: 182 DVKKAEK-GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKH 240

Query: 288 ----YGSINTDHILFIASGAF--------------------------------HVSRPAD 311
               +  I+T  ILF+  GAF                                    P D
Sbjct: 241 PNQDFIQIDTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDD 300

Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
           L+     PE+ GR  +   L  + K     ILT  ++ L+ QY+++ + +G  L F + +
Sbjct: 301 LISYGLIPELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGA 360

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           I+A+A++A++  +     GAR L+ +ME  + D+ +   +L+   + I  E +       
Sbjct: 361 IEAIAELAISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECITDKQAPL 415

Query: 427 PSET 430
             + 
Sbjct: 416 MVKK 419



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 17/235 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------LRDELMPKNILLVGP 61
           SP+E+ + LD Y+IGQ  AK+  ++A+ N ++R               EL   NILL+GP
Sbjct: 71  SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 130

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           TG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V+++ +  
Sbjct: 131 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEKGI 190

Query: 122 V----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           V     ++ S  +E R I   + G+       ++    + +                 D 
Sbjct: 191 VFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDT 250

Query: 177 SNF-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +   + GGA  G+ ++ +  L   V+G   +KK +    +    L   E D LI
Sbjct: 251 KDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGK---SEESALLEYVEPDDLI 302


>gi|259507909|ref|ZP_05750809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium efficiens YS-314]
 gi|259164404|gb|EEW48958.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium efficiens YS-314]
          Length = 422

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 60/323 (18%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR  E        +  DT    SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLRAHEQIGGRRRRDEEDTELIKSNILLLGPTGSGKTYLAQTLAKLLDVPFAIADAT 150

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS 
Sbjct: 151 SLTEAG-YVGEDVENILLKLLQAADFDVERAQ-RGIIYIDEVDKISRKSENPSITRDVSG 208

Query: 269 EGVQRDLLPLVEGSSV-----------STKYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG+             +  +  ++T +ILFI +GAF             
Sbjct: 209 EGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQLDTTNILFIVAGAFSGLEKIIGERRGK 268

Query: 306 ----------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                   RP DL     +PE  GR PV   + +L++     +L
Sbjct: 269 KGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGLIPEFIGRLPVVATVANLDQESLVKVL 328

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  ++L+ QYK L + +  +L FT+D+++A+AD+A+   +     GAR L+ ++E +L 
Sbjct: 329 TEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIADLALERKT-----GARGLRAILEEILV 383

Query: 399 DISFSASDLQEKT-VVIDAEYVR 420
            I +   D  + T VVI  E  R
Sbjct: 384 PIMYDIPDRDDVTEVVITGEVAR 406



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 9/121 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILL 58
            P EI + LD+Y++GQ  AKR +++A+ N ++R +            +   EL+  NILL
Sbjct: 62  KPSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILL 121

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 122 LGPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQ 181

Query: 119 R 119
           R
Sbjct: 182 R 182


>gi|331241319|ref|XP_003333308.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309312298|gb|EFP88889.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 584

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 103/509 (20%), Positives = 195/509 (38%), Gaps = 107/509 (21%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           L+   SPR+I  ELD Y+I Q DAK+ +++A+ N + R     ++ +E   + + L   +
Sbjct: 33  LSSLPSPRDIHRELDNYVIAQSDAKKILSVAVFNHYIRVNALLEV-EEKRKRQVKLEADS 91

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            +     S+    L       VE    +E     +N+ +I    +    +       + +
Sbjct: 92  KLAANETSQTRVNLTN---TDVEQPHSSES---SQNINRIPPTALR--PHPPNGLAHNLI 143

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +A   +     + L  +     +R++ +K     +      D       +   +  + 
Sbjct: 144 MSKAVEASLRLEREELENRIRQMTSRQMKKKHPSANQKDQGAPDDNEVLPFTPSYSSTLY 203

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
              +    N      +    G     ++ +Q+   +L + +  +L D     + +    +
Sbjct: 204 QRNATSPPNAQGREWENSPIGIPNNDQVILQQ-LQDLNKPKIGQLADEKKSGQANNDATK 262

Query: 243 -NYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSV---------------- 284
            + GI+F+DE DKI  +   G    VS EGVQ+ +L ++EG+ V                
Sbjct: 263 ASRGIIFIDEVDKIARKSGDGYVKDVSGEGVQQAMLRMLEGTMVTVADKGSAADTSSASG 322

Query: 285 -----------STKYGSINTDHILFIASGAF---------HVSRPA-------------- 310
                      ST+   ++T +ILFI +GAF          +S+ +              
Sbjct: 323 RHQDPASSSGKSTQPIQVDTSNILFILAGAFVGLEKIINKRISKTSIGFSASLINQPGSD 382

Query: 311 ---DLLP------------EIQGRFP-------------------------VRVHLKSLN 330
              DL P               GR P                         V   LK+L 
Sbjct: 383 DGCDLPPVGLRSEGEGSGNTAHGRLPDALEQVEPADLNAFGLIPEFIGRIPVLASLKALT 442

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           ++D   +LT+ ++ L+ QY++L K  G+ + FT  +  A+A +A    +     GAR L+
Sbjct: 443 ENDLLRVLTEPKNCLLKQYEQLFKINGVAIKFTLPAQRAIARLANEKKT-----GARGLR 497

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYV 419
            +ME++L D  ++A     + ++ID   V
Sbjct: 498 QIMEKILLDSMYTAPQSSIRYILIDESVV 526


>gi|116327863|ref|YP_797583.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330747|ref|YP_800465.1| ATP-dependent protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281499|sp|Q04TR3|CLPX_LEPBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122284343|sp|Q052U5|CLPX_LEPBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116120607|gb|ABJ78650.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124436|gb|ABJ75707.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 420

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 80/377 (21%)

Query: 109 VAINIVRESRRDEVREQASINAE-ERILD--ALVGKTATSNTREVFRKKLRDGEISDKEI 165
           +A +      + EV  +     + + ILD   +    A            +   + +K+ 
Sbjct: 49  IAEDHEHSHEKSEVFSEIPNPVDIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKS 108

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+E+  +     N  + G    G   L++  ++++      K+  ++         +   
Sbjct: 109 DVEIEKS-----NILLIGPTGSGKTLLAQTLARII------KVPFAIVDATAL--TEAGY 155

Query: 226 RLIDMDTVHRDSIQMVENY------GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
              D++ +    IQ  EN       GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 156 VGEDVENIILKLIQNAENDIKKAEIGIIYIDEVDKIARKSDSASITRDVSGEGVQQALLK 215

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  +            +Y  ++T +ILFI  GAF                      
Sbjct: 216 IIEGTIANVPPQGGRKHPHQEYLQVDTKNILFILGGAFVDLPNIIKSRTGVKTIGFGSEE 275

Query: 305 ------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL+     PE  GR P+   L+ LN    + I  + +++++ 
Sbjct: 276 QRIQAENKDTLMEQVIPEDLIKFGLIPEFIGRLPIVATLQELNVDMLKQIFREPKNSVLK 335

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++ E + L F ED+ID +A++A+   S     GAR L+ ++E ++ D+ F     
Sbjct: 336 QYTRLLELENVKLTFHEDAIDKIAELAIKRES-----GARGLRAIVENIMLDLMFDIPSR 390

Query: 408 QE-KTVVIDAEYVRLHI 423
           ++ + V+I AE +   +
Sbjct: 391 KDIEEVIITAEVITDRV 407



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P +I S LD+Y+IGQ  AK+A+++A+ N ++R  L     D E+   NILL+GPTG GKT
Sbjct: 69  PVDIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N ++++       DEV
Sbjct: 129 LLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNAENDIKKAEIGIIYIDEV 188

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +                 D  N   I
Sbjct: 189 DKIARKSDSASITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEYLQVDTKNILFI 248

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            GGA V + N+ +  + V   G   + +    +    LM  
Sbjct: 249 LGGAFVDLPNIIKSRTGVKTIGFGSEEQRIQAENKDTLMEQ 289


>gi|160947716|ref|ZP_02094883.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270]
 gi|158446850|gb|EDP23845.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270]
          Length = 414

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 63/311 (20%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           +++++ EV    S   N  + G    G   L++  +KV+          ++ +    +  
Sbjct: 99  NRDVESEVEIQKS---NILLVGPTGSGKTLLAQTLAKVLDVPFAIADATTLTEAG-YVGE 154

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLV 279
           D  + ++ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++
Sbjct: 155 DVENIILKLVQAADYDIERAEK-GIIYIDEIDKITRKSENPSITRDVSGEGVQQSLLKII 213

Query: 280 EGSSVST-----------KYGSINTDHILFIASGAFH----------------------- 305
           EG+  +            +Y  ++T +ILFI  GAF                        
Sbjct: 214 EGTVSNVPPKGGRKHPDQQYIQVDTTNILFIVGGAFQGIESILKARLEKKSMGFGADVKT 273

Query: 306 -----------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                        RP DL     +PE  GR P+ V L+SLN++    IL + ++ LI QY
Sbjct: 274 DKLDDFSEIIKNLRPEDLLKYGLIPEFVGRIPMIVTLESLNENSLIRILEEPKNALIKQY 333

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
           KEL+  + I L+F +D+I  +A +A+   +     GAR L+ V+E  L D  F+    + 
Sbjct: 334 KELLSMDNIELEFEKDAIKEIAKIALERKT-----GARGLRAVIESALLDTMFTLPSEKN 388

Query: 410 -KTVVIDAEYV 419
            +  ++  + V
Sbjct: 389 VEKCIVTKDVV 399



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 8/228 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P EI   LD YII Q +AK+A+++A+ N ++R     +   E+   NILLVGPTG GKT
Sbjct: 65  TPVEIKKILDEYIIQQDNAKKALSVAVYNHYKRINRDVESEVEIQKSNILLVGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ LA++   PF   + T  TE GYVG +VE II  LV  A   +  + +  +     
Sbjct: 125 LLAQTLAKVLDVPFAIADATTLTEAGYVGEDVENIILKLVQAADYDIERAEKGIIY---- 180

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I          S TR+V  + ++   +   E  +          + D      V
Sbjct: 181 ---IDEIDKITRKSENPSITRDVSGEGVQQSLLKIIEGTVSNVPPKGGRKHPD-QQYIQV 236

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              N+  +                 +K        ++D+L D   + +
Sbjct: 237 DTTNILFIVGGAFQGIESILKARLEKKSMGFGADVKTDKLDDFSEIIK 284


>gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 412

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 65/333 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++ D      E  +E+  +     N  + G    G   L++  ++ +          
Sbjct: 92  HYKRILDNAERTDENAVELQKS-----NVLLIGPTGSGKTLLAQTLARSLKVPFAIADAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 147 TLTEAG-YVGDDVENVLVRLLQAADYDVEAAEK-GIIYIDEIDKIARKSENVSITRDVSG 204

Query: 269 EGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG+   V  + G          I+T +ILFI  GAF             
Sbjct: 205 EGVQQALLKIIEGTKSQVPPQGGRKHPNQELIEIDTSNILFIVGGAFEGLEKVIKSRTNK 264

Query: 306 --------VSR--------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                   +S+              P DL     +PE+ GR P+   L+ L++     IL
Sbjct: 265 KVIGFGAEISKEKEERVGEVFAKVLPEDLVRQGIIPELVGRLPIITTLQDLDEEALIKIL 324

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ ++ QYK+L   EG+ L+FT +++  +A +A+        IGAR L+ ++E+ + 
Sbjct: 325 TEPKNAIVKQYKKLFDIEGVELEFTPEALKKIAKLALERR-----IGARGLRAIIEQTML 379

Query: 399 DISFSAS-DLQEKTVVIDAEYVRLHIGDFPSET 430
           ++ +    D     VVI  E V         + 
Sbjct: 380 ELMYEVPSDESIHKVVIGEEAVLDSSKAIIEKE 412



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 12/241 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
            +P+EI  +LD Y+IGQ + K+ +A+A+ N ++R    A+  DE    L   N+LL+GPT
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILAVAVYNHYKRILDNAERTDENAVELQKSNVLLIGPT 121

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + +   
Sbjct: 122 GSGKTLLAQTLARSLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVEAAEKGII 181

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++                        D S
Sbjct: 182 YIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPQGGRKHPNQELIEIDTS 241

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           N     G +   L   E   K   + +       + K   E + +   +++  D V +  
Sbjct: 242 NILFIVGGAFEGL---EKVIKSRTNKKVIGFGAEISKEKEERVGEVFAKVLPEDLVRQGI 298

Query: 238 I 238
           I
Sbjct: 299 I 299


>gi|325680665|ref|ZP_08160203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
 gi|324107445|gb|EGC01723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 8]
          Length = 424

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 63/329 (19%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +       +D +  D     SN  + G    G   L++  ++++          ++ +  
Sbjct: 103 NHYKRILTLDDDFDDVEIQKSNVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAG 162

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVEN--YGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                 E+     +  + + +   VE   +GI+++DE DKI  +     I   VS EGVQ
Sbjct: 163 YVGDDVEN----VLTRLIQAANYNVEEASHGIIYIDEIDKIARKSENTSITRDVSGEGVQ 218

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSRPAD----- 311
           + LL +VEG+  +            ++  I+T +ILFI  GAF      + +  D     
Sbjct: 219 QALLKIVEGTVSNVPPQGGRKHPHQEFIQIDTKNILFICGGAFDGLEAVIKKRTDSSSMG 278

Query: 312 ---------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                      ++PE+ GR PV   L  L++S    ILT+ +++
Sbjct: 279 FGGTVKNKSSDFNVLKKVVPHDLVKFGIVPELVGRLPVITVLDELDESALCKILTEPKNS 338

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY +L + + I  + T D++  +A V +   +     GAR L++V+ER+L  + F A
Sbjct: 339 LIKQYTKLFRLDDIDFEVTPDALTEIAKVTIEQKT-----GARGLRSVVERILTKLMFDA 393

Query: 405 S-DLQEKTVVIDAEYVRLHIG-DFPSETD 431
             D   K + I AE VR     +   E D
Sbjct: 394 PSDSTIKGIKITAECVRDGAEPEIIREKD 422



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P EI + LD Y++GQ +AK A+++A+ N ++R     D  D  E+   N+LL+GPTG G
Sbjct: 75  KPAEIKAVLDEYVVGQDEAKIALSVAVYNHYKRILTLDDDFDDVEIQKSNVLLLGPTGTG 134

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ LARL   PF   + T  TE GYVG +VE ++  L+  A   V E+       D
Sbjct: 135 KTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEASHGIIYID 194

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +                 D  N  
Sbjct: 195 EIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFIQIDTKNIL 254

Query: 181 IPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVHRD 236
              G +   L         S  MG G   K + S      +++  +  +  I  + V R 
Sbjct: 255 FICGGAFDGLEAVIKKRTDSSSMGFGGTVKNKSSDFNVLKKVVPHDLVKFGIVPELVGRL 314

Query: 237 SIQMVENYGIVFLDEFD 253
            +       I  LDE D
Sbjct: 315 PV-------ITVLDELD 324


>gi|297569272|ref|YP_003690616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925187|gb|ADH85997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 419

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 60/311 (19%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           ++ +  D     SN  + G    G   L++  ++++          ++ +    +  D  
Sbjct: 101 LEGDYQDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG-YVGEDVE 159

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS 282
           + L+ +     + ++   + GIV++DE DKI  +         VS EGVQ+ LL ++EG+
Sbjct: 160 NILVSLLQAADNDVERA-SRGIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGT 218

Query: 283 SVST-----------KYGSINTDHILFIASGAF--------------------------- 304
             S            +Y  ++T +ILFI  GAF                           
Sbjct: 219 VASIPPKGGRKHPQQEYIKLDTSNILFICGGAFVGLEQVIGQRAGSKSLGFGAKVVGKSK 278

Query: 305 ------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              L+PE+ GR PV   +  L + D   IL + ++ L  QY++L
Sbjct: 279 KKTGEILAQVASEDLLRYGLIPELVGRLPVTATMDELEEEDLIRILREPKNALTRQYEKL 338

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
              + I L FTE ++ A+A  A+   +     GAR L++VME  + DI +     +  + 
Sbjct: 339 FAFDDIRLRFTEGALAAIAREAIQRKA-----GARGLRSVMEAAMLDIMYDLPSQENVRE 393

Query: 412 VVIDAEYVRLH 422
            VI  + +  H
Sbjct: 394 CVISEQVITNH 404



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 10/232 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD-ELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +     D +D EL   NILL+GPTG
Sbjct: 63  LKPSEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGDLEGDYQDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A N V  + R    
Sbjct: 123 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVSLLQAADNDVERASRGIVY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    +   + G+       ++    +            +      D SN
Sbjct: 183 IDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYIKLDTSN 242

Query: 179 F-DIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA VG+   + +           K +  S +K    L +  S+ L+
Sbjct: 243 ILFICGGAFVGLEQVIGQRAGSKSLGFGAKVVGKSKKKTGEILAQVASEDLL 294


>gi|193216008|ref|YP_001997207.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroherpeton
           thalassium ATCC 35110]
 gi|226706580|sp|B3QWK0|CLPX_CHLT3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|193089485|gb|ACF14760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Chloroherpeton thalassium ATCC 35110]
          Length = 431

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E   +E D+ +  +     N  + G    G   L++  + ++          
Sbjct: 103 HYKRIESQEWLLEEDDVVIEKS-----NILLIGPTGTGKTLLAQTLANILDVPFTIVDAT 157

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 158 SLTEAG-YVGDDVESILARLLQAADYNLERAEK-GIIYIDEIDKIARKSANVSITRDVSG 215

Query: 269 EGVQRDLLPLVEGSS--VSTKYG---------SINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG+   V  K G         ++NT +ILFI  GAF             
Sbjct: 216 EGVQQALLKILEGTVAGVPPKGGRKHPEQHLINVNTKNILFICGGAFEGLEKVISRRLAQ 275

Query: 306 --------------------VSR--PADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                               +S+  P DL     +PE  GR P    L  LNK   + IL
Sbjct: 276 NAMGFGTAITAASEKESIELISKVTPEDLYQFGLIPEFIGRMPFIATLDPLNKEALKNIL 335

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ +  QYK+L + E + L F  D++D + D AV   +     GAR L++V+E V+ 
Sbjct: 336 IEPKNAITKQYKKLFEMENVELIFDTDALDLVVDTAVKRGT-----GARALRSVLEEVML 390

Query: 399 DISFSASDLQE-KTVVIDAEYVRLH 422
           +I F   ++ E KT +I  E +   
Sbjct: 391 NIMFDLPNMNEVKTCIITKECIEKK 415



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 130/309 (42%), Gaps = 24/309 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTG 63
            P EI  EL++Y++GQ+ AK+A+A+A+ N ++R +    L +E    +   NILL+GPTG
Sbjct: 74  KPTEIRDELNKYVVGQERAKKALAVAVYNHYKRIESQEWLLEEDDVVIEKSNILLIGPTG 133

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA +   PF  V+ T  TE GYVG +VE I+  L+  A   +  + +    
Sbjct: 134 TGKTLLAQTLANILDVPFTIVDATSLTEAGYVGDDVESILARLLQAADYNLERAEKGIIY 193

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 194 IDEIDKIARKSANVSITRDVSGEGVQQALLKILEGTVAGVPPKGGRKHPEQHLINVNTKN 253

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID---MDTVH 234
              I GGA  G+  +         S R  +  M            ES  LI     + ++
Sbjct: 254 ILFICGGAFEGLEKV--------ISRRLAQNAMGFGTAITAASEKESIELISKVTPEDLY 305

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
           +  +       + F+   D +      N +   +  + +    L E  +V   +   +TD
Sbjct: 306 QFGLIPEFIGRMPFIATLDPLNKEALKNILIEPKNAITKQYKKLFEMENVELIF---DTD 362

Query: 295 HILFIASGA 303
            +  +   A
Sbjct: 363 ALDLVVDTA 371


>gi|225012270|ref|ZP_03702707.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
 gi|225003825|gb|EEG41798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria
           bacterium MS024-2A]
          Length = 411

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 58/301 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  I G    G   L++  S+++           + +    +  D    L  +      
Sbjct: 109 SNVLIVGPTGTGKTLLAQTISRLLNVPLAIVDATVLTEAG-YVGEDVESILSRLLQASDY 167

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            +   +  GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+         
Sbjct: 168 DVDRAQK-GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKH 226

Query: 287 ---KYGSINTDHILFIASGAF-----HVSR----------------------------PA 310
              K+  ++T +ILFIA GAF     H+S+                            P 
Sbjct: 227 PDQKFIEVDTSNILFIAGGAFDGINSHISKRLNLQAIGYKTAQEQRNVDKENMLQYITPR 286

Query: 311 D-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           D     L+PEI GR PV  ++  L+K+  R ILT  ++ L+ QY  L + + I L FT  
Sbjct: 287 DIRSFGLIPEIIGRLPVLTYMNPLDKATLREILTTPKNALVKQYIHLFEMDEIELQFTSG 346

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++D + D A+        +GAR L+++ E +L D  F       K + +  +Y    +  
Sbjct: 347 ALDYIVDKALQYK-----LGARGLRSLCEAILNDAMFELPQTDMKNLKVTKQYAESKLSK 401

Query: 426 F 426
            
Sbjct: 402 I 402



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 9/192 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64
           P+EI + LD Y+IGQ+ +KR +++A+ N ++R         +   E+   N+L+VGPTG 
Sbjct: 60  PKEIKAFLDTYVIGQESSKRVLSVAVYNHYKRLVQTASKKENDPVEIQKSNVLIVGPTGT 119

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ ++RL   P   V+ T  TE GYVG +VE I+  L+  +   V  +++     
Sbjct: 120 GKTLLAQTISRLLNVPLAIVDATVLTEAGYVGEDVESILSRLLQASDYDVDRAQKGIVFI 179

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+       ++    + +          +      D SN 
Sbjct: 180 DEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVDTSNI 239

Query: 180 DIPGGASVGILN 191
               G +   +N
Sbjct: 240 LFIAGGAFDGIN 251


>gi|25028847|ref|NP_738901.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           efficiens YS-314]
 gi|46576594|sp|Q8FN57|CLPX_COREF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|23494133|dbj|BAC19101.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Corynebacterium efficiens YS-314]
          Length = 426

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 60/323 (18%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR  E        +  DT    SN  + G    G   L++  +K++          
Sbjct: 94  HYKRLRAHEQIGGRRRRDEEDTELIKSNILLLGPTGSGKTYLAQTLAKLLDVPFAIADAT 153

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS 
Sbjct: 154 SLTEAG-YVGEDVENILLKLLQAADFDVERAQ-RGIIYIDEVDKISRKSENPSITRDVSG 211

Query: 269 EGVQRDLLPLVEGSSV-----------STKYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG+             +  +  ++T +ILFI +GAF             
Sbjct: 212 EGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQLDTTNILFIVAGAFSGLEKIIGERRGK 271

Query: 306 ----------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                   RP DL     +PE  GR PV   + +L++     +L
Sbjct: 272 KGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGLIPEFIGRLPVVATVANLDQESLVKVL 331

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  ++L+ QYK L + +  +L FT+D+++A+AD+A+   +     GAR L+ ++E +L 
Sbjct: 332 TEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIADLALERKT-----GARGLRAILEEILV 386

Query: 399 DISFSASDLQEKT-VVIDAEYVR 420
            I +   D  + T VVI  E  R
Sbjct: 387 PIMYDIPDRDDVTEVVITGEVAR 409



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 9/121 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILL 58
            P EI + LD+Y++GQ  AKR +++A+ N ++R +            +   EL+  NILL
Sbjct: 65  KPSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILL 124

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE I+  L+  A   V  ++
Sbjct: 125 LGPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVERAQ 184

Query: 119 R 119
           R
Sbjct: 185 R 185


>gi|304440713|ref|ZP_07400597.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370900|gb|EFM24522.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 403

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 59/312 (18%)

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           K I  +  +     SN  + G    G   L++  +K++          S+ +    +  D
Sbjct: 90  KRIHHKSEEVELQKSNILMIGPTGSGKTLLAQTLAKIINVPFAIADATSLTEAG-YVGED 148

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + L+ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 149 VENILLKLIQAADYDIEKAE-MGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIE 207

Query: 281 GSSVST-----------KYGSINTDHILFIASGAFHVSRP-------------------- 309
           G+  +            ++   NT+++LFI  GAF    P                    
Sbjct: 208 GTIANVPPQGGRKHPAQEFIQFNTENVLFICGGAFDGLAPIIEHRVGKNSIGFGQTVISE 267

Query: 310 ------------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                               L+PE+ GR PV V L+ L++     IL   ++ L+ QYKE
Sbjct: 268 TERDKNILSKLHTEDLIKFGLIPELIGRLPVTVTLEELDEEALVEILKTPKNALVKQYKE 327

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EK 410
           L+K +G+ L F E+++  +A +A+   S     GAR L+ V+E  + D+ F        +
Sbjct: 328 LLKLDGVDLKFEEEALKYIASMAIKKKS-----GARGLRGVIEDTMMDVMFEIPSQDNIQ 382

Query: 411 TVVIDAEYVRLH 422
            V+I  E V   
Sbjct: 383 EVIITKESVEGK 394



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 10/235 (4%)

Query: 3   LTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           L F+F   +P+EI   LD Y+I Q+ AK+A+A+A+ N ++R    ++   EL   NIL++
Sbjct: 51  LDFDFELKTPKEIKEVLDSYVIKQEAAKKALAVAVYNHYKRIHHKSE-EVELQKSNILMI 109

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++  
Sbjct: 110 GPTGSGKTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAEM 169

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 170 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPAQEFIQF 229

Query: 175 DISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +  N   I GGA  G+  + E        G  + +    ++    L +  ++ LI
Sbjct: 230 NTENVLFICGGAFDGLAPIIEHRVGKNSIGFGQTVISETERDKNILSKLHTEDLI 284


>gi|319788748|ref|YP_004090063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
 gi|315450615|gb|ADU24177.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus
           albus 7]
          Length = 423

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 62/318 (19%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +       ++ +  D     SN  + G    G   L++  ++++          ++ +  
Sbjct: 100 NHYKRILTLEDDTDDVEIQKSNVLLLGPTGTGKTLLAQTLARLLNVPFAIADATTLTEAG 159

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVEN--YGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                 E+     +  + + +   VE   +GI+++DE DKI  +     I   VS EGVQ
Sbjct: 160 YVGDDVEN----VLTRLIQAANYNVEEASHGIIYIDEIDKIARKSENTSITRDVSGEGVQ 215

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSRPAD----- 311
           + LL +VEG+  +            ++  I+T +ILFI  GAF      + +  D     
Sbjct: 216 QALLKIVEGTVSNVPPQGGRKHPHQEFIQIDTKNILFICGGAFDGLEAVIKKRTDSSSMG 275

Query: 312 ---------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                      ++PE+ GR PV   L  L++     ILT+ +++
Sbjct: 276 FGGKVKDKTSDYNILKKVVPHDLVKFGIVPELVGRLPVITVLDELDEPALCRILTEPKNS 335

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY +L + + I  + T +++  +A V +   +     GAR L+ V+ER+L  + F A
Sbjct: 336 LIKQYTKLFELDNIEFEVTPEALTEIAKVTIEQKT-----GARGLRAVVERILTQLMFDA 390

Query: 405 S-DLQEKTVVIDAEYVRL 421
             D     + I AE V+ 
Sbjct: 391 PSDDTISGIRITAECVKD 408



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 18/260 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P EI + LD Y+IGQ DAK A+++A+ N ++R     D  D  E+   N+LL+GPTG G
Sbjct: 72  KPSEIKAVLDEYVIGQDDAKIALSVAVYNHYKRILTLEDDTDDVEIQKSNVLLLGPTGTG 131

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RD 120
           KT +++ LARL   PF   + T  TE GYVG +VE ++  L+  A   V E+       D
Sbjct: 132 KTLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEASHGIIYID 191

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +                 D  N  
Sbjct: 192 EIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFIQIDTKNIL 251

Query: 181 IPGGASVGILN---LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVHRD 236
              G +   L         S  MG G K K + S      +++  +  +  I  + V R 
Sbjct: 252 FICGGAFDGLEAVIKKRTDSSSMGFGGKVKDKTSDYNILKKVVPHDLVKFGIVPELVGRL 311

Query: 237 SIQMVENYGIVFLDEFDKIV 256
            +       I  LDE D+  
Sbjct: 312 PV-------ITVLDELDEPA 324


>gi|253581497|ref|ZP_04858722.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
 gi|251836567|gb|EES65102.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium
           ATCC 27725]
          Length = 416

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 60/307 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ +      
Sbjct: 114 SNVLLIGPTGSGKTLLAQTLARCLSVPFAIADATTLTEAG-YVGDDVENVLVRLLQAADY 172

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
            ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+   V  + G   
Sbjct: 173 DVEAAE-RGIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKH 231

Query: 290 ------SINTDHILFIASGAFHVSR----------------------------------P 309
                  I+T +ILFI  GAF                                      P
Sbjct: 232 PNQELIEIDTANILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETEEKVGEVFVKVLP 291

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE+ GR PV   LK L++     ILT+ ++ ++ QYK+L   EG+ L+FT 
Sbjct: 292 EDLVRQGIIPELVGRLPVITTLKDLDEEALIRILTEPKNAIVKQYKKLFDLEGVDLEFTP 351

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHI 423
           +++  +A +A+        IGAR L+ ++E+ + ++ +    D     V I  E V    
Sbjct: 352 EALKKIAVLALERK-----IGARGLRAIIEQTMLELMYEVPSDDSITKVTIGEEAVLDST 406

Query: 424 GDFPSET 430
                + 
Sbjct: 407 KAIIEKE 413



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGP 61
            +P+EI  +LD Y+IGQ + K+ +++A+ N ++R          D   EL   N+LL+GP
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILNKNNYGEEDNNVELQKSNVLLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + R
Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVEAAER 179


>gi|32266682|ref|NP_860714.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter
           hepaticus ATCC 51449]
 gi|46576465|sp|Q7VGY5|CLPX_HELHP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|32262733|gb|AAP77780.1| ATP-dependent Clp protease [Helicobacter hepaticus ATCC 51449]
          Length = 426

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 60/322 (18%)

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L + E+ +  +  +V  + S   N  + G    G   +++  ++ +          S+ +
Sbjct: 103 LSEEEMPNPILQDDVELSKS---NILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTE 159

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
               +  D  + L  +       ++  E  GIVF+DE DKI        I   VS EGVQ
Sbjct: 160 AG-YVGEDVENILTRLLQAADGDVKKAEK-GIVFIDEIDKISRLSENRSITRDVSGEGVQ 217

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH---------------- 305
           + LL ++EGS V+            ++  INT  ILF+  GAF                 
Sbjct: 218 QALLKIIEGSVVNIPPKGGRKHPNQEFVQINTSDILFVCGGAFDGLGDIIKRRLGGNVLG 277

Query: 306 ----------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DL+     PE+ GR  +   L  ++K     ILT  ++ 
Sbjct: 278 FHGEKKGKSEEDALLKYVEPDDLISYGLIPELIGRLHMITTLSPISKEAMVEILTKPKNA 337

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           LI QY+++ + +G  L F +D+I+++A++A+   +     GAR L+++ME  + D+ +  
Sbjct: 338 LIKQYQKIFEIDGATLHFEKDAIESIAELAIARKT-----GARGLRSIMEGAMIDLMYDL 392

Query: 405 SDLQEKTVVIDAEYVRLHIGDF 426
            +L    + I  E +       
Sbjct: 393 PELAGYEITISKECIMDKQSPL 414



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----------DLRDELMPKNI 56
           SP+E+ ++LD Y+IGQ +AKR  ++A+ N ++R +  +               EL   NI
Sbjct: 65  SPKELKAKLDEYVIGQDEAKRVFSVAVYNHYKRIKANSLSEEEMPNPILQDDVELSKSNI 124

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LL+GPTG GKT +++ LAR    P    + T  TE GYVG +VE I+  L+  A   V++
Sbjct: 125 LLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKK 184

Query: 117 SRRDEV----REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           + +  V     ++ S  +E R I   + G+       ++    + +              
Sbjct: 185 AEKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEF 244

Query: 172 TSSDISNFDIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              + S+     G     +G +    L   V+G   +KK +    +    L   E D LI
Sbjct: 245 VQINTSDILFVCGGAFDGLGDIIKRRLGGNVLGFHGEKKGK---SEEDALLKYVEPDDLI 301


>gi|297182366|gb|ADI18532.1| ATP-dependent protease clp, ATPase subunit [uncultured SAR406
           cluster bacterium HF4000_22B16]
          Length = 380

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 59/302 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   +++  ++ +          S+ +    +  D  + L+ +  V   
Sbjct: 78  SNILMIGPTGTGKTLIAQTLARYLSVPFAIADATSLTEAG-YVGEDVENILVRLLQVANY 136

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
           SI   E  GIV++DE DKI  +   + I   VS EGVQ+ +L ++EG+  +V  K G   
Sbjct: 137 SINSAEQ-GIVYIDEIDKIGRKSLSSSITRDVSGEGVQQAILKILEGTIANVPPKGGRKH 195

Query: 290 ------SINTDHILFIASGAFH---------------------------------VSRPA 310
                  +NT +ILFI  G+F                                  + +P 
Sbjct: 196 PEQSLIPVNTKNILFICGGSFESLEGIIARRVGKTEIGFGGSRKRQLAESQGILSLIKPQ 255

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL+     PE+ GR PV   L SL+ S+   +L   +++L+ QY++L + EGI L+F+ED
Sbjct: 256 DLIEFGYIPELIGRLPVLTTLDSLSVSELYEVLISPKNSLVKQYQKLFRMEGIELEFSED 315

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHIG 424
           ++ A+   A          GAR L++V+E+ + DI +   +++    ++I  + +     
Sbjct: 316 ALKAVISKAYE-----HQAGARGLRSVLEKAMMDIMYHIPEMENVHKIIITKDVIEKKKS 370

Query: 425 DF 426
             
Sbjct: 371 PL 372



 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 7/232 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IG ++ K++VA+A+ N ++R      D   EL   NIL++GPTG GKT
Sbjct: 32  PSEIKEYLDQYVIGHEETKKSVAVAVHNHYKRIFYNDVDDGVELEKSNILMIGPTGTGKT 91

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            I++ LAR    PF   + T  TE GYVG +VE I+  L+ VA   +  +       DE+
Sbjct: 92  LIAQTLARYLSVPFAIADATSLTEAGYVGEDVENILVRLLQVANYSINSAEQGIVYIDEI 151

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            +    +    I   + G+       ++    + +          E +    +  N   I
Sbjct: 152 DKIGRKSLSSSITRDVSGEGVQQAILKILEGTIANVPPKGGRKHPEQSLIPVNTKNILFI 211

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            GG+   +  +          G     +  + +    L   +   LI+   +
Sbjct: 212 CGGSFESLEGIIARRVGKTEIGFGGSRKRQLAESQGILSLIKPQDLIEFGYI 263


>gi|260060593|ref|YP_003193673.1| ATP-dependent protease ATP-binding subunit ClpX [Robiginitalea
           biformata HTCC2501]
 gi|88784723|gb|EAR15892.1| ATP-dependent protease ATP-binding subunit [Robiginitalea biformata
           HTCC2501]
          Length = 411

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 131/325 (40%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L      + EI+I+        SN  + G    G   +++  ++++          
Sbjct: 90  HYKRLLQPSSKEDEIEIQK-------SNIVMVGQTGTGKTLMAKTIARMLNVPLAIVDAT 142

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D    L  +      +++  E  GIVF+DE DKI  +     I   VS 
Sbjct: 143 VLTEAG-YVGEDVESILTRLLQAADYNLEKAE-RGIVFIDELDKIARKSDNPSITRDVSG 200

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL L+EG+ V+            K+  +NT++ILFIA GAF             
Sbjct: 201 EGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILFIAGGAFDGIERIITRRLNM 260

Query: 306 --------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                       +   L+PEI GR PV  H+  L++   R ILT
Sbjct: 261 QAIGYSASKREETLDAENVLQYIIPKDLKEFGLIPEIIGRLPVLTHMNPLDRKTLRSILT 320

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  + +I QY++L   +GI    T+ ++D + D A+        +GAR L+++ E V  D
Sbjct: 321 EPRNAIIKQYEKLFAMDGITFRITDQALDFIVDKAIEYK-----LGARGLRSLCEAVFTD 375

Query: 400 ISFSASDLQEKTVVIDAEYVRLHIG 424
             F     +E    +   Y    + 
Sbjct: 376 AMFELPSTEETEFKVTKPYAEEKLS 400



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVG 65
            P EI   LD Y+IGQ+  K+ +++A+ N ++R   P+   DE+     NI++VG TG G
Sbjct: 61  KPVEIKEFLDTYVIGQERTKKVLSVAVYNHYKRLLQPSSKEDEIEIQKSNIVMVGQTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + ++ R     D
Sbjct: 121 KTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAERGIVFID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    + +          +      +  N  
Sbjct: 181 ELDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENIL 240

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            I GGA  GI  +      +   G     R         L 
Sbjct: 241 FIAGGAFDGIERIITRRLNMQAIGYSASKREETLDAENVLQ 281


>gi|299783051|gb|ADJ41049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           fermentum CECT 5716]
          Length = 290

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 60/286 (20%)

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           +++  ++++          ++ +    +  D  + ++ +       I   E  GI+++DE
Sbjct: 1   MAQSLARILNVPFAIADATTLTEAG-YVGEDVENIILKLLQAADFDIDRAEK-GIIYIDE 58

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILF 298
            DKI  +     I   VS EGVQ+ LL ++EG+  +            ++  ++T +ILF
Sbjct: 59  IDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNILF 118

Query: 299 IASGAF----------------------------------HVSRPADLL-----PEIQGR 319
           I  GAF                                      P DLL     PE  GR
Sbjct: 119 IVGGAFDGIETIVKERLGDKTIGFGTDSKEINDVTEKNILQHVIPEDLLKFGLIPEFIGR 178

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L+++D   ILT+ ++ L+ QY+EL++ +G  L FT  ++ A+A +A++ N+
Sbjct: 179 LPVMTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMAKMAIDRNT 238

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
                GAR L++++E V+ DI F     Q+   VVI+ E V  H  
Sbjct: 239 -----GARGLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKHTA 279



 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123
           +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   +  + +     DE+ 
Sbjct: 1   MAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAADFDIDRAEKGIIYIDEID 60

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           + A  +    I   + G+       ++    + +          +      D  N     
Sbjct: 61  KIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIV 120

Query: 184 GASVGILN 191
           G +   + 
Sbjct: 121 GGAFDGIE 128


>gi|227497468|ref|ZP_03927697.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
 gi|226833042|gb|EEH65425.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
          Length = 430

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 61/300 (20%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G  +L+   ++++          ++ +    +  D  + L+ +    
Sbjct: 112 GKSNILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAG-YVGEDVENILLKLIQAA 170

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
              ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S       
Sbjct: 171 DGDVKRAEK-GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGR 229

Query: 287 -----KYGSINTDHILFIASGAFH-----------------------------------V 306
                ++  I+T +ILFIA+GAF                                     
Sbjct: 230 KHPHQEFLEIDTTNILFIAAGAFAGIEDIVRQRQRKESGATTLGFGGTLSEETQDVFTTK 289

Query: 307 SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
            RP DL     +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ L 
Sbjct: 290 VRPEDLHKFGLIPEFIGRLPVIATVQDLGVKELVRVMTEPKNALVSQYEYLFSLDGVELV 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
            T+++I+A+A++A+   +     GAR L +++E VL D  F    + E   VV+DA+ VR
Sbjct: 350 MTDEAIEAVAEMALARKT-----GARGLTSIVEEVLGDAMFEVPSMPEVGRVVVDADAVR 404



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            P+EI   L+ Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPT
Sbjct: 63  KPQEIFDFLNEYVIGQEAAKRAMSVAVYNHYKRVQVRERAVAEGDGLELGKSNILLLGPT 122

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 123 GTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179


>gi|42518937|ref|NP_964867.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           NCC 533]
 gi|61211574|sp|Q74JU4|CLPX_LACJO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|41583224|gb|AAS08833.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii NCC 533]
          Length = 421

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+   T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDIERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FT+ ++ A+AD+A++       +GAR L++++E  L D+ +   
Sbjct: 329 VKQYKKLLSLDDVDLEFTDGALQAIADMAISRR-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 -DLQEKTVVIDAEYVRLH 422
            D   K V I  + +  H
Sbjct: 384 SDDNIKEVQITKDVITKH 401



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEF 345


>gi|86130753|ref|ZP_01049352.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
 gi|85818164|gb|EAQ39324.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia
           donghaensis MED134]
          Length = 410

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 66/369 (17%)

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           DVA N +    + +  ++     +E ++     K   S       K+L      D   DI
Sbjct: 47  DVATNDLEGELKLKKPQEIKSFLDEYVIGQEFTKRVMSVAVYNHYKRLLQPATDD---DI 103

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+  +     N  + G    G   +++  ++++           + +    +  D    L
Sbjct: 104 EIQKS-----NIVMVGQTGTGKTLIAKTVARMLNVPLAIVDATVLTEAG-YVGEDVESIL 157

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
             +      +++  +  GIVF+DE DKI  +     I   VS EGVQ+ LL L+EG+ V+
Sbjct: 158 TRLLQAADYNLEKAQ-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVN 216

Query: 286 T-----------KYGSINTDHILFIASGAF-----HVSR--------------------- 308
                       K+  +NT+HILFIA GAF     H+S+                     
Sbjct: 217 VPPKGGRKHPDQKFIEVNTEHILFIAGGAFDGIERHISKRLNMQAMGFVASKSDEALEKD 276

Query: 309 -------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL     +PEI GR PV  H+  L+    R ILT+ ++ +I QYK+L   +
Sbjct: 277 NMLKYIIPKDLKDFGLIPEIIGRLPVLTHMNPLDAGTLRAILTEPKNAIIKQYKKLFAMD 336

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            I    T+D++D L D A+        +GAR L+++ E +L D  F      EK++ +  
Sbjct: 337 DIEFSITDDALDYLVDKAIEYK-----LGARGLRSLCEAILTDAMFDLPSSDEKSLNVTK 391

Query: 417 EYVRLHIGD 425
            Y    +  
Sbjct: 392 TYAEGKLNK 400



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 11/233 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI S LD Y+IGQ+  KR +++A+ N ++R   PA   D E+   NI++VG TG GK
Sbjct: 61  KPQEIKSFLDEYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R     DE
Sbjct: 121 TLIAKTVARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQRGIVFIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +          +      +  +   
Sbjct: 181 IDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVNTEHILF 240

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             G +   +        +      + +     K    L +D   + I    + 
Sbjct: 241 IAGGAFDGIERH-----ISKRLNMQAMGFVASKSDEALEKDNMLKYIIPKDLK 288


>gi|198477567|ref|XP_002136555.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
 gi|198142843|gb|EDY71556.1| GA27659 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 79/268 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI           V  EGVQ+ +L ++EG
Sbjct: 360 DIESVISKLLQDANYNVDRAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEG 419

Query: 282 SSVSTKYG-----------SINTDHILFIASGAF-------------------------- 304
           + V+                ++T +ILF+ASGA+                          
Sbjct: 420 TVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSG 479

Query: 305 --------HVSRPAD----------------------LLPEIQGRFPVRVHLKSLNKSDF 334
                    V+ P D                      ++PE  GRFPV V   SLN S  
Sbjct: 480 SGNRRAVQSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSML 539

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  + L+ QYK L+  + + L F ED+++++A +A+  ++     GAR L+++ME
Sbjct: 540 VRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIME 594

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++L D  F       + V I  E VR  
Sbjct: 595 QLLLDPMFIVPGSDIRGVHITGECVRGQ 622



 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 188 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 222


>gi|38606907|gb|AAR25446.1| Clp protease [Lactobacillus johnsonii]
          Length = 395

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+   T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 65  NHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 124

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 125 -YVGEDVENILLKLLQNADYDIERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 182

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 183 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 242

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 243 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNAL 302

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FT+ ++ A+AD+A++       +GAR L++++E  L D+ +   
Sbjct: 303 VKQYKKLLSLDDVDLEFTDGALQAIADMAISRR-----MGARGLRSIVENSLMDVMYRTP 357

Query: 406 -DLQEKTVVIDAEYVRLH 422
            D   K V I  + +  H
Sbjct: 358 SDDNIKEVQITKDVITKH 375



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 37  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSG 96

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 97  KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYID 156

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 157 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 216

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 217 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 270

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 271 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEF 319


>gi|157964842|ref|YP_001499666.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           massiliae MTU5]
 gi|167009019|sp|A8F2I3|CLPX_RICM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157844618|gb|ABV85119.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           massiliae MTU5]
          Length = 425

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 135/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIAAEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+      IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDNEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L   + +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDDSALEAIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V+I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVIITQEVVNGLVEPIMT 406



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 20/259 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFD 253
           R  I       +  LDE D
Sbjct: 302 RLPI-------VTTLDELD 313


>gi|255038318|ref|YP_003088939.1| Sigma 54 interacting domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951074|gb|ACT95774.1| Sigma 54 interacting domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 414

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 126/304 (41%), Gaps = 64/304 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  ++++           V +        E+   RL+     +
Sbjct: 110 SNIIMVGETGTGKTYLAKSIARILQVPFCVADATVVTEAGYVGEDVETILTRLLQAADYN 169

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
            ++ +     GIV++DE DKI  +     I   VS EGVQ+ LL L+EGS V+       
Sbjct: 170 VEAAER----GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGR 225

Query: 287 -----KYGSINTDHILFIASGAF-----HVSRP--------------------------- 309
                K  S+NT++ILFI  GAF     H+ +                            
Sbjct: 226 KHPDQKMISLNTENILFICGGAFDGIERHIGKRINTRPIGFNGDNRIIEIFDKGNLMRYV 285

Query: 310 -------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
                    L+PE+ GR PV  HL  L++   R ILT+ ++ L+ QY +L   EGI L F
Sbjct: 286 TAMDLKSFGLIPELIGRLPVLTHLNPLDRETLRRILTEPKNALVRQYSKLFAMEGITLHF 345

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
            +  +D + D A+        +GAR L+ + E ++ D  F     +E K   +  +Y + 
Sbjct: 346 EDAVLDYIVDQAMIYK-----LGARGLRAICESIMTDAMFDLPSQKEVKEFTLSLDYAKD 400

Query: 422 HIGD 425
               
Sbjct: 401 KFEK 404



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-PKNILLVGPTGVGKT 67
           P EI   L++Y+IGQ +AKR++A+A+ N ++R    A   D ++   NI++VG TG GKT
Sbjct: 64  PAEIKHFLEQYVIGQDEAKRSLAVAVYNHYKRLNQAATEDDVVIEKSNIIMVGETGTGKT 123

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ +AR+   PF   + T  TE GYVG +VE I+  L+  A   V  + R     DE+
Sbjct: 124 YLAKSIARILQVPFCVADATVVTEAGYVGEDVETILTRLLQAADYNVEAAERGIVYIDEI 183

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +          +    S +  N    
Sbjct: 184 DKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQKMISLNTENILFI 243

Query: 183 GGASVGILN 191
            G +   + 
Sbjct: 244 CGGAFDGIE 252


>gi|309804187|ref|ZP_07698265.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805931|ref|ZP_07699961.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 03V1-b]
 gi|308163770|gb|EFO66039.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 11V1-d]
 gi|308167670|gb|EFO69819.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus
           iners LactinV 03V1-b]
          Length = 160

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 76/133 (57%), Positives = 104/133 (78%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV  LD YIIGQ  AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT
Sbjct: 4   TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I  ++  D V+ +A+
Sbjct: 64  EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123

Query: 128 INAEERILDALVG 140
            +A +R++  LV 
Sbjct: 124 EHANDRLIKLLVP 136


>gi|302191374|ref|ZP_07267628.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           iners AB-1]
          Length = 429

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 58/313 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 106 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 165 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 223

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 224 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 283

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 284 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVE 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 344 LEFSTDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 399 ITKASDPIIVFED 411



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P +I   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 64  KPIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 124 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 184 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 243

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 244 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 295

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 296 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEF 346


>gi|238898002|ref|YP_002923682.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465760|gb|ACQ67534.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 436

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 118/306 (38%), Gaps = 74/306 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++ +       +  ++      ++ +      D++ + 
Sbjct: 122 GKSNILLIGPTGSGKTLLAETLARFLN------VPFTIADA--TVLTEAGYVGEDVENII 173

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 174 QKLLQKCNYDVQKAQLGIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASV 233

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 234 PPQGGRKHPQQEFLQVDTSKILFICGGAFADLNKVIEQRLNTGTGIGFNATVKGAREKTN 293

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                      DL     +PE  GR PV   L  LN+     IL   ++ L  QY+ L  
Sbjct: 294 EDKILSQVETEDLVKFGLIPEFIGRLPVIAVLDQLNEEALIQILKAPKNALTKQYQALFH 353

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F  +++ A+A  A+   +     GAR L++++E  L D  +     +    VV
Sbjct: 354 LEGVELEFHYNALKAIAKKALVRKT-----GARGLRSIVENTLLDTMYDLPSTENVSKVV 408

Query: 414 IDAEYV 419
           ++   +
Sbjct: 409 VNESVI 414



 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 7/253 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I + LD Y+IGQ+ AK+ +++A+ N ++R         EL   NILL+GPTG GKT
Sbjct: 78  TPHQIRAHLDDYVIGQEAAKKVLSVAVYNHYKRLSHSIPDGVELGKSNILLIGPTGSGKT 137

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            ++  LAR    PF   + T  TE GYVG +VE II+ L+      V++++      DE+
Sbjct: 138 LLAETLARFLNVPFTIADATVLTEAGYVGEDVENIIQKLLQKCNYDVQKAQLGIIYIDEI 197

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + +  +    I   + G+       ++    +            +      D S     
Sbjct: 198 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQVDTSKILFI 257

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
            G +    +L+++  + + +G       +V+    +   D+    ++ + + +  +    
Sbjct: 258 CGGAFA--DLNKVIEQRLNTGTGIGFNATVKGAREKTNEDKILSQVETEDLVKFGLIPEF 315

Query: 243 NYGIVFLDEFDKI 255
              +  +   D++
Sbjct: 316 IGRLPVIAVLDQL 328


>gi|24215258|ref|NP_712739.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45657294|ref|YP_001380.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|46576590|sp|Q8F353|CLPX_LEPIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|59797806|sp|Q72SG5|CLPX_LEPIC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|24196348|gb|AAN49757.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45600532|gb|AAS70017.1| ATP-dependent protease [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 420

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 155/378 (41%), Gaps = 80/378 (21%)

Query: 109 VAINIVRESRRDEVREQASINAE-ERILD--ALVGKTATSNTREVFRKKLRDGEISDKEI 165
           +A +      + EV  +    A+ + ILD   +    A            +   + +K+ 
Sbjct: 49  IAEDHEHSHEKSEVFSEVPSPADIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKS 108

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+E+  +     N  + G    G   L++  ++++      K+  ++         +   
Sbjct: 109 DVEIEKS-----NILLIGPTGSGKTLLAQTLARII------KVPFAIVDATAL--TEAGY 155

Query: 226 RLIDMDTVHRDSIQMVENY------GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
              D++ +    IQ  +N       GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 156 VGEDVENIILKLIQNADNDIKKAEVGIIYIDEVDKIARKSDSASITRDVSGEGVQQALLK 215

Query: 278 LVEGSSVST-----------KYGSINTDHILFIASGAF---------------------- 304
           ++EG+  +            +Y  ++T +ILFI  GAF                      
Sbjct: 216 IIEGTVANVPPQGGRKHPHQEYLQVDTKNILFILGGAFVDLPNIIKSRTGIKTIGFGSEE 275

Query: 305 ------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL+     PE  GR P+   L+ LN    R I  + +++++ 
Sbjct: 276 QRIQSENKDVLMEQVIPEDLIKFGLIPEFIGRLPIVATLQELNVDMLRQIFREPKNSVLK 335

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY  L++ E + L F +++ID +A++A+   S     GAR L+ ++E ++ D+ F     
Sbjct: 336 QYTRLLELENVKLTFHDEAIDKIAELAIKRES-----GARGLRAIVENIMLDLMFDIPSR 390

Query: 408 QE-KTVVIDAEYVRLHIG 424
           ++ + V+I AE +   + 
Sbjct: 391 KDIEEVIITAEVIANRVA 408



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           SP +I S LD+Y+IGQ  AK+A+++A+ N ++R  L     D E+   NILL+GPTG GK
Sbjct: 68  SPADIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGK 127

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LAR+   PF  V+ T  TE GYVG +VE II  L+  A N ++++       DE
Sbjct: 128 TLLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDIKKAEVGIIYIDE 187

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           V + A  +    I   + G+       ++    + +                 D  N   
Sbjct: 188 VDKIARKSDSASITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEYLQVDTKNILF 247

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           I GGA V + N+ +  + +   G   + +    +    LM  
Sbjct: 248 ILGGAFVDLPNIIKSRTGIKTIGFGSEEQRIQSENKDVLMEQ 289


>gi|157826114|ref|YP_001493834.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia akari
           str. Hartford]
 gi|166215196|sp|A8GPK1|CLPX_RICAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157800072|gb|ABV75326.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str.
           Hartford]
          Length = 425

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 134/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIAAEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGVDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QYK+  + +   L     +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYKKQFELDDTELVIENSALEAIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVEPIMT 406



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I + L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 180 DIPGGASVGILNLS----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
            I GGA +G+ ++        S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGVDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|34581315|ref|ZP_00142795.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           sibirica 246]
 gi|28262700|gb|EAA26204.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           sibirica 246]
          Length = 425

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYLQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIASEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFTANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++ +A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDYSALETIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVKPIMT 406



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYLQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFTANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|150026122|ref|YP_001296948.1| ATP-dependent protease ATP-binding subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772663|emb|CAL44146.1| S14 family, ATP-dependent Clp protease ATP-binding subunit
           [Flavobacterium psychrophilum JIP02/86]
          Length = 410

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 129/312 (41%), Gaps = 65/312 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +    E++IE        SN  + G    G   +++  +K++           + +   
Sbjct: 96  QQNDHDEVEIEK-------SNIIMVGQTGTGKTLVAKTIAKMLDVPLAIVDATVLTEAG- 147

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +       +   E  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 148 YVGEDVESILTRLLQAADYDVAKAE-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQAL 206

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------------- 305
           L L+EG+ V+            K+  +NT  ILFIA GAF                    
Sbjct: 207 LKLLEGTVVNVPPKGGRKHPDQKFVEVNTQDILFIAGGAFDGIERIISKRLNRQAVGYST 266

Query: 306 -------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                +   L+PEI GR PV  H+  L+K   R ILT  ++ LI
Sbjct: 267 SKNVDNIDKDNLLQYIIPKDIKDFGLIPEIIGRLPVLTHMDPLDKETLRAILTQPKNALI 326

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY++L   + ++ + T++++D + D A+        +GAR L+++ E +L D  +    
Sbjct: 327 KQYQKLFMMDDVVFNITDEALDFIVDKALEYK-----LGARGLRSLCEAILTDAMYELPS 381

Query: 407 LQEKTVVIDAEY 418
             +K + ID EY
Sbjct: 382 SDDKILNIDKEY 393



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P++I + LD+Y+IGQ   K+ +++A+ N ++R     D  + E+   NI++VG TG GK
Sbjct: 61  KPKQIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQNDHDEVEIEKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V ++ R  V
Sbjct: 121 TLVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVAKAERGIV 176


>gi|309804151|ref|ZP_07698229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|312875511|ref|ZP_07735514.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
 gi|308163734|gb|EFO66003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|311089022|gb|EFQ47463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
          Length = 429

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 58/313 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 106 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 165 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 223

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 224 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 283

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 284 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVE 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 344 LEFSTDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 399 ITKASDPIIVFED 411



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 64  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 124 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 184 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 243

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 244 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 295

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 296 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEF 346


>gi|320120477|gb|ADW16162.1| hypothetical protein HMPREF0389_01717 [Filifactor alocis ATCC
           35896]
          Length = 419

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 62/299 (20%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           EV    S++      G    G   L++  +K++          ++ +    +  D  + L
Sbjct: 107 EVELQKSNVIMI---GPTGSGKTLLAQTLAKILHVPFAIADATALTEAG-YVGEDVENIL 162

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVS 285
           + +       I+  E  GI+++DE DKI  +         VS EGVQ+ LL ++E +  +
Sbjct: 163 LKLIQAANFDIEKAEK-GIIYIDEIDKIARKTDNPSLTRDVSGEGVQQALLKILESTKAN 221

Query: 286 TK-----------YGSINTDHILFIASGAF---------------------HVSRPAD-- 311
                        +  I+T +ILFI  GAF                     +  +  D  
Sbjct: 222 VPPQGGRKHPHQDFLQIDTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSN 281

Query: 312 ----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                           L+PE   R PV V L++L++     ILT+ ++ L+ QYK+L + 
Sbjct: 282 ISFYEKVESQDLLKYGLIPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFEL 341

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           +G+ L+  ED++ A+A  A++       IGAR L++++E ++ DI +     ++   VI
Sbjct: 342 DGVELEVEEDALIAIAKQAIDRK-----IGARGLRSILENIMIDIMYEIPSREDIGKVI 395



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGP 61
             P EI + LD Y+IGQ++AK+ +A+A+ N ++R              EL   N++++GP
Sbjct: 61  LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAANFDIEKAEK 178


>gi|224476765|ref|YP_002634371.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254763863|sp|B9DNC0|CLPX_STACT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|222421372|emb|CAL28186.1| protease ClpX [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 420

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 141/321 (43%), Gaps = 65/321 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++     D E++++        SN  + G    G   L++  +K +          
Sbjct: 92  HYKRIQQLGPKDNEVELQK-------SNVALIGPTGSGKTLLAQTLAKTLNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS 
Sbjct: 145 SLTEAG-YVGEDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG++ S            ++  I+T +ILFI  GAF             
Sbjct: 203 EGVQQALLKILEGTTASVPPQGGRKHPNQEFIQIDTTNILFILGGAFDGIDEVIKRRLGE 262

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                 RP DL     +PE  GR P+  +L++L+ +  + ILT 
Sbjct: 263 KVIGFASNEAAKYDESALLEHIRPEDLQSYGLIPEFIGRIPIVANLETLDIAALKNILTQ 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QYK++++ + + L+FTE+++ A+A+ A+   +     GAR L++++E  L +I
Sbjct: 323 PKNALVKQYKKMLELDHVELEFTEEALTAIAEKAIERKT-----GARGLRSIIEESLIEI 377

Query: 401 SFSASDLQEK-TVVIDAEYVR 420
            +      +   VVI    + 
Sbjct: 378 MYDIPSSDDVAKVVITDNTIN 398



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           + T   +P+EI+ +L+ Y+IGQ  AK+++++A+ N ++R Q   P D   EL   N+ L+
Sbjct: 57  EFTDLPTPKEIMDQLNNYVIGQDKAKKSLSVAVYNHYKRIQQLGPKDNEVELQKSNVALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAADFDIDKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++                        
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 237 DTTNILFILGGAFDGID 253


>gi|258404645|ref|YP_003197387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
 gi|257796872|gb|ACV67809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfohalobium retbaense DSM 5692]
          Length = 414

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 134/330 (40%), Gaps = 64/330 (19%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   KK+    + +    +  A  S D+    SN    G    G   +++  ++++    
Sbjct: 77  QDMAKKVLAVAVHNHYKRVYYAGGSDDVELDKSNILFVGPTGSGKTLMAQTLARILNVPF 136

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
                 ++ +    +  D  + L+ +       ++     GI+++DE DK+  +     I
Sbjct: 137 AIADATNLTEAG-YVGEDVENILVQLLQNADYDLEKASK-GIIYIDEIDKVARKSDSPSI 194

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------- 304
              VS EGVQ+ LL ++EG+  +            ++  ++T +ILFI  GAF       
Sbjct: 195 TRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRMDTSNILFILGGAFVGLEDII 254

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                          P DL     +PE  GR PV   L  L++ 
Sbjct: 255 QQRLQGSSMGFGARLVGKKEMSIGDVLRQVHPEDLLKFGLIPEFVGRIPVVATLDELSED 314

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   ILT   + L+ QY++L + + + L FT +++ A+A  A+   +     GAR L+ V
Sbjct: 315 DLVHILTAPRNALVKQYQKLFELDEVHLRFTNNALKAIATRALAQKT-----GARGLRNV 369

Query: 393 MERVLEDISFSASDLQE-KTVVIDAEYVRL 421
           ME ++ D+ +    + + K  V++   V  
Sbjct: 370 METIMLDLMYKLPSMTDVKECVVNKAVVEE 399



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 12/289 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI   L+ Y++GQ  AK+ +A+A+ N ++R        D EL   NIL VGPTG G
Sbjct: 61  LPPAEIKEALNDYVVGQDMAKKVLAVAVHNHYKRVYYAGGSDDVELDKSNILFVGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++ +     D
Sbjct: 121 KTLMAQTLARILNVPFAIADATNLTEAGYVGEDVENILVQLLQNADYDLEKASKGIIYID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++      +          +      D SN  
Sbjct: 181 EIDKVARKSDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRMDTSNIL 240

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA VG+ ++ +   +    G   ++    +    +++R      +  + + +  + 
Sbjct: 241 FILGGAFVGLEDIIQQRLQGSSMGFGARLVGKKEMSIGDVLRQ-----VHPEDLLKFGLI 295

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   D++   D  + +   R  + +    L E   V  ++
Sbjct: 296 PEFVGRIPVVATLDELSEDDLVHILTAPRNALVKQYQKLFELDEVHLRF 344


>gi|15892991|ref|NP_360705.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str.
           Malish 7]
 gi|21263474|sp|Q92GQ4|CLPX_RICCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|15620188|gb|AAL03606.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia
           conorii str. Malish 7]
          Length = 425

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIASEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++ +A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDYSALETIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVEPIMT 406



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|229587051|ref|YP_002845552.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia africae
           ESF-5]
 gi|259491267|sp|C3PLG9|CLPX_RICAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|228022101|gb|ACP53809.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           africae ESF-5]
          Length = 425

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIASEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEVEDLTKFGLIPEFIGRLPIVTTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++ +A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIDYSALETIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVEPIMT 406



 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  +   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEVEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314


>gi|33862334|ref|NP_893894.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9313]
 gi|46576458|sp|Q7V993|CLPX_PROMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33640447|emb|CAE20236.1| putative Clp protease ATP-binding subunit, ClpX [Prochlorococcus
           marinus str. MIT 9313]
          Length = 452

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 131/337 (38%), Gaps = 73/337 (21%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D + + +++ T    SN  + G    G   L++  ++++          ++ +       
Sbjct: 121 DGQGETDLSATRLHKSNILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGED 180

Query: 222 DESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            E+  L     + + +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 181 VENILL----RLLQKADMDVEHAQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLK 236

Query: 278 LVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR------PAD 311
           ++EG+  +                I+T  ILFI  GAF          + R      P+D
Sbjct: 237 MLEGTVANVPPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQKRLGRNAIGFMPSD 296

Query: 312 -----------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                        L+PE  GR PV   L+ L+      ILT+  
Sbjct: 297 GRGRSRANRDLQASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPR 356

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             L+ Q+  L+  + + L+F  D+++A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 357 DALVKQFSTLLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411

Query: 403 SASDLQE-KTVVIDAEYVRLHIG----DFPSETDMYH 434
                +  K   +    V  H G      P+  +  H
Sbjct: 412 DLPSKKNVKKFTVTRTMVDEHTGGKVLPLPANDERSH 448



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 19/240 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P++I S LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPQQIKSFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 143 PTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQRG 202

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    + +                 D
Sbjct: 203 IIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQID 262

Query: 176 ISNF-DIPGGASVGILNL------SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            S    I GGA +G+ ++            +   GR +       +    L   E+D L+
Sbjct: 263 TSQILFICGGAFIGLEDVVQKRLGRNAIGFMPSDGRGRSRANRDLQASQVLHHLEADDLV 322


>gi|260654936|ref|ZP_05860424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
           anthropi E3_33 E1]
 gi|260630251|gb|EEX48445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella
           anthropi E3_33 E1]
          Length = 435

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 61/306 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E  D     SN  + G    G   L++  ++ +          ++ +    +  D  + L
Sbjct: 110 ESEDVELQKSNLLLLGPTGSGKTLLAQTLARKLNVPFAMSDATTLTEAG-YVGEDVENIL 168

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       +   E +GI++LDE DKI  +     I   VS EGVQ+ LL ++EG+  +
Sbjct: 169 LRLIQAANFDVSAAE-HGIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVAN 227

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       ++ +I+T +ILFI +GAF                              
Sbjct: 228 VPPQGGRKHPQQEFIAIDTRNILFICAGAFDGLEEIIARRLNRHVIGFGGENQERKRDVS 287

Query: 305 ----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL+     PE+ GR P+ V L++L++     +LT+ +++L+ QY+ +   
Sbjct: 288 YDLLSQVEPEDLIHYGFIPELTGRLPLAVALRTLDEDALVRVLTEPKNSLVRQYQAIFAQ 347

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS--DLQEKTVV 413
           EG  L+FT  ++ A+A  AVN  +     GAR L+++ME ++ D+ +           VV
Sbjct: 348 EGAELEFTPQALRAIAQKAVNKKA-----GARGLRSIMENLMLDLMYEVPSSSRPVSRVV 402

Query: 414 IDAEYV 419
           I    V
Sbjct: 403 IGEACV 408



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 19/259 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTG 63
            P E+ + LD Y+IGQ  AK+A+++A+ N +RR             EL   N+LL+GPTG
Sbjct: 69  KPAEMKAFLDEYVIGQDQAKKALSVAVYNHYRRIGWLALAQESEDVELQKSNLLLLGPTG 128

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  +      
Sbjct: 129 SGKTLLAQTLARKLNVPFAMSDATTLTEAGYVGEDVENILLRLIQAANFDVSAAEHGIIY 188

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    + +          +    + D  N
Sbjct: 189 LDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIAIDTRN 248

Query: 179 FDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                  +     L E+ ++ +        G  ++ +  V   Y  L + E + LI    
Sbjct: 249 ILFICAGAFD--GLEEIIARRLNRHVIGFGGENQERKRDVS--YDLLSQVEPEDLIHYGF 304

Query: 233 VHRDSIQMVENYGIVFLDE 251
           +   + ++     +  LDE
Sbjct: 305 IPELTGRLPLAVALRTLDE 323


>gi|163786487|ref|ZP_02180935.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159878347|gb|EDP72403.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 410

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 137/346 (39%), Gaps = 66/346 (19%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +E I+     K   S       K+L      D   DIE+  +     N  + G    G  
Sbjct: 70  DEYIIGQEYTKRVMSVAVYNHYKRLLQPPSDD---DIEIQKS-----NIIMVGQTGTGKT 121

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            +++  ++++           + +    +  D    L  +      +++  +  GIVF+D
Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAG-YVGEDVESILTRLLQAADYNLEKAQ-RGIVFID 179

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +NT+HIL
Sbjct: 180 EIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVNTEHIL 239

Query: 298 FIASGAFH--------------------------------------VSRPADLLPEIQGR 319
           FIA GAF                                         +   L+PEI GR
Sbjct: 240 FIAGGAFDGIERVITKRLNMQAIGYSSINSDDAIDNDNILQYIIPKDLKDFGLIPEIIGR 299

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV  H+  L+ +  R ILT+ ++ +I QYK+L   + +    TE +++ + + A+    
Sbjct: 300 LPVLTHMDPLDANTLRAILTEPKNAIIKQYKKLFAMDEVDFTITEGALNYVVEKAIEYK- 358

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
               +GAR L+++ E +L +  F      E  + +   Y    +  
Sbjct: 359 ----LGARGLRSLCEEILTEAMFDLPGSGETKLNVTKAYAEDRLSK 400



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P+EI + LD YIIGQ+  KR +++A+ N ++R  Q P+D   E+   NI++VG TG GK
Sbjct: 61  KPKEIKAFLDEYIIGQEYTKRVMSVAVYNHYKRLLQPPSDDDIEIQKSNIIMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R  V
Sbjct: 121 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQRGIV 176


>gi|195054491|ref|XP_001994158.1| GH23301 [Drosophila grimshawi]
 gi|193896028|gb|EDV94894.1| GH23301 [Drosophila grimshawi]
          Length = 675

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 77/264 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI           V  EGVQ+ +L ++EG
Sbjct: 370 DIESVISKLLQDANYNVERAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEG 429

Query: 282 SSVSTKYG-----------SINTDHILFIASGAF-------------------------- 304
           + V+                ++T +ILF+ASGA+                          
Sbjct: 430 TVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSTSGS 489

Query: 305 ------HVSRPAD----------------------LLPEIQGRFPVRVHLKSLNKSDFRL 336
                   + P +                      ++PE  GRFPV V   SLN S    
Sbjct: 490 GRRAAQSAAAPMENDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVR 549

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+  + L+ QYK L+  + + L FTED+++++A +A+  ++     GAR L+++ME++
Sbjct: 550 ILTEPRNALVPQYKALLGLDEVELSFTEDAVESIAALAMERHT-----GARGLRSIMEQL 604

Query: 397 LEDISFSASDLQEKTVVIDAEYVR 420
           L D  F       ++V I  +YVR
Sbjct: 605 LLDPMFIVPGSDIRSVHITGDYVR 628



 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 25/35 (71%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ+ AK+ +A+A+ N ++R    
Sbjct: 191 QKIMEYLDKHVVGQEFAKKVLAVAVYNHYKRIHHN 225


>gi|259500684|ref|ZP_05743586.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|259168068|gb|EEW52563.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
          Length = 433

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 58/313 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 110 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 169 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 227

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 228 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 287

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 288 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 348 LEFSTDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 403 ITKASDPIIVFED 415



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P +I   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 68  KPIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 128 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 187

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 188 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 247

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 248 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 299

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 300 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEF 350


>gi|139437041|ref|ZP_01771201.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC
           25986]
 gi|133776688|gb|EBA40508.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 65/316 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
            +  D    +E+A +     N  + G    G   L++  ++++          ++ +   
Sbjct: 156 SQFDDDMDKVELAKS-----NILLLGPTGTGKTLLAQTLARILEVPFAIADATALTEAG- 209

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ L
Sbjct: 210 YVGEDVENILLKLINAADGDIERAQ-VGIIYVDEIDKIARKAENLSITRDVSGEGVQQAL 268

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-------------------- 304
           L ++EG+  S            +   I+T +ILFI  GAF                    
Sbjct: 269 LKILEGTVASVPPTGGRKHPQQELLQIDTTNILFICGGAFVGLDKIIADRVGNKGVGFNS 328

Query: 305 --------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                             P DL     +PE  GR PV    ++L++ D   ILT+ ++ +
Sbjct: 329 EIAGPTSVDENDLLRQVLPQDLNAFGMIPEFVGRTPVVTQTQALDEDDLVSILTEPKNAV 388

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY+++ + E + L+F + ++  +A +A+   +     GAR L+++ E VL+   F   
Sbjct: 389 VRQYRKMFQLEDVELEFEDAALHEIARMALARKT-----GARGLRSICEDVLQQTMFDLP 443

Query: 406 DLQE-KTVVIDAEYVR 420
             +    V++    V+
Sbjct: 444 SEEGVSKVIVTEASVK 459



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 22/211 (10%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPA 45
           +T   +P EI  EL  Y++GQ+DAKRA+++A+ N +RR                 Q    
Sbjct: 102 ITHVPTPHEIYDELSAYVMGQEDAKRAMSVAVYNHYRRVIEGGAAVSAFDDDMGSQFDDD 161

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
             + EL   NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  
Sbjct: 162 MDKVELAKSNILLLGPTGTGKTLLAQTLARILEVPFAIADATALTEAGYVGEDVENILLK 221

Query: 106 LVDVAINIVRESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160
           L++ A   +  ++      DE+ + A       I   + G+       ++    +     
Sbjct: 222 LINAADGDIERAQVGIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPP 281

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           +      +      D +N     G +   L+
Sbjct: 282 TGGRKHPQQELLQIDTTNILFICGGAFVGLD 312


>gi|27374380|gb|AAO01118.1| CG4538-PA [Drosophila pseudoobscura]
          Length = 666

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 79/268 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI           V  EGVQ+ +L ++EG
Sbjct: 360 DIESVISKLLQDANYNVDRAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEG 419

Query: 282 SSVSTKYG-----------SINTDHILFIASGAF-------------------------- 304
           + V+                ++T +ILF+ASGA+                          
Sbjct: 420 TVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSG 479

Query: 305 --------HVSRPAD----------------------LLPEIQGRFPVRVHLKSLNKSDF 334
                    V+ P D                      ++PE  GRFPV V   SLN S  
Sbjct: 480 SGNRRAVQSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSML 539

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  + L+ QYK L+  + + L F ED+++++A +A+  ++     GAR L+++ME
Sbjct: 540 VRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIME 594

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++L D  F       + V I  E VR  
Sbjct: 595 QLLLDPMFIVPGSDIRGVHITGECVRGQ 622



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 188 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 222


>gi|159900346|ref|YP_001546593.1| ATP-dependent protease ATP-binding subunit ClpX [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|238687098|sp|A9B8B2|CLPX_HERA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|159893385|gb|ABX06465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 432

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 69/326 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR     D +++I+        SN  + G    G   L++  ++++          
Sbjct: 96  HYKRLRAQAQGDTDVEIQK-------SNILLVGPTGSGKTLLAQTLARMLDVPFAIADAT 148

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D    L+ +       +   +  GI+++DE DKI  +     I   VS 
Sbjct: 149 ALTEAG-YVGEDVETILLRLIQAADGDVDRAQ-MGILYIDEIDKIARKADNPSITRDVSG 206

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG  V+            ++   +T ++LFI  GAF             
Sbjct: 207 EGVQQALLKILEGGVVNVPPMPGRKHPQQEFIPFDTTNVLFICGGAFEGLEHHIAERMGS 266

Query: 306 ------------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRL 336
                                   +  P DL     +PE  GR PV   L  L+K     
Sbjct: 267 GGTLGFGKTIVKEERLERSKKLLSLVNPDDLLHFGFIPEFIGRMPVVAALTPLDKDAMMR 326

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+  + +I QY++++  + + L+ + D+++A+ + A+   +     GAR L+T +E +
Sbjct: 327 ILTEPRNAIIKQYQKMLALDHVQLEVSGDAMEAIVERALAGKT-----GARGLRTAVEEI 381

Query: 397 LEDISFSASDLQE-KTVVIDAEYVRL 421
           L D+ F      +    VI AE VR 
Sbjct: 382 LLDVMFDLPSETDVVRCVITAETVRD 407



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 9/231 (3%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKT 67
             I   LD Y+IGQ  AK+ +A+A+ N ++R   Q   D   E+   NILLVGPTG GKT
Sbjct: 69  HAIRDHLDEYVIGQDRAKKVMAVAVYNHYKRLRAQAQGDTDVEIQKSNILLVGPTGSGKT 128

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++      DE+
Sbjct: 129 LLAQTLARMLDVPFAIADATALTEAGYVGEDVETILLRLIQAADGDVDRAQMGILYIDEI 188

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A       I   + G+       ++    + +          +      D +N    
Sbjct: 189 DKIARKADNPSITRDVSGEGVQQALLKILEGGVVNVPPMPGRKHPQQEFIPFDTTNVLFI 248

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            G +   L      ++ MGSG       ++ K        +   L++ D +
Sbjct: 249 CGGAFEGLEHH--IAERMGSGGTLGFGKTIVKEERLERSKKLLSLVNPDDL 297


>gi|312871447|ref|ZP_07731542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872315|ref|ZP_07732385.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325912860|ref|ZP_08175238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
 gi|311092138|gb|EFQ50512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093100|gb|EFQ51449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|325477853|gb|EGC80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
          Length = 433

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 58/313 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 110 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 169 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 227

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 228 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 287

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 288 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 348 LEFSTDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 403 ITKASDPIIVFED 415



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 68  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 128 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 187

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 188 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 247

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 248 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 299

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 300 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEF 350


>gi|269926533|ref|YP_003323156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790193|gb|ACZ42334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 422

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 60/310 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+++ D     SN  + G    G   L++  +K++          ++ +    +  D  +
Sbjct: 102 DMQIDDVELQKSNILMIGPTGSGKTLLAQTLAKILDVPFSIADATALTEAG-YVGEDVEN 160

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       IQ  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 161 ILLRLIQAADLDIQRAE-RGIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTV 219

Query: 284 VST-----------KYGSINTDHILFIASGAFH-----VSR------------------- 308
            +            ++  I+T +ILFI  GAF      V++                   
Sbjct: 220 ANVPPQSGRKHPHQEFIQIDTTNILFICGGAFEGLEDIVAKRIGAKRSLGFARQEYDSGQ 279

Query: 309 ----------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DLL     PE  GR PV V L  L K D   ILT  ++ +I QY++LM
Sbjct: 280 SEGSVLQHVIPEDLLKFGLIPEFIGRLPVVVTLDPLTKEDLIHILTKPKNAIIKQYQKLM 339

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
             + + L FT D+++A A+ A+   +     GAR L++ +E VL +  +    L   +  
Sbjct: 340 ALDNVELQFTNDALEAAAEEAIARKT-----GARGLRSTIEEVLLETMYEIPSLTGVRKC 394

Query: 413 VIDAEYVRLH 422
           ++D + +R  
Sbjct: 395 IVDGDTIRNR 404



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 7/191 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P++I   LD Y++GQ  AK+ +++A+ N ++R      + D EL   NIL++GPTG GKT
Sbjct: 67  PKKIYELLDNYVVGQDRAKKTLSVAVYNHYKRVAADMQIDDVELQKSNILMIGPTGSGKT 126

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   ++ + R     DE+
Sbjct: 127 LLAQTLAKILDVPFSIADATALTEAGYVGEDVENILLRLIQAADLDIQRAERGIIYIDEI 186

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A       I   + G+       ++    + +                 D +N   I
Sbjct: 187 DKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEFIQIDTTNILFI 246

Query: 182 PGGASVGILNL 192
            GGA  G+ ++
Sbjct: 247 CGGAFEGLEDI 257


>gi|312873980|ref|ZP_07734016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090529|gb|EFQ48937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
          Length = 429

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 58/309 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 106 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 165 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 223

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 224 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 283

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR PV   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 284 KHLTTDDLVKYGLIPEFIGRVPVITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVE 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 344 LEFSSDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398

Query: 419 VRLHIGDFP 427
           +        
Sbjct: 399 ITKASDPII 407



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 64  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 124 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 184 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 243

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 244 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 295

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 296 LIPEFIGRVPVITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEF 346


>gi|125777787|ref|XP_001359727.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
 gi|54639477|gb|EAL28879.1| GA18242 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 79/268 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI           V  EGVQ+ +L ++EG
Sbjct: 360 DIESVISKLLQDANYNVDRAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEG 419

Query: 282 SSVSTKYG-----------SINTDHILFIASGAF-------------------------- 304
           + V+                ++T +ILF+ASGA+                          
Sbjct: 420 TVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSG 479

Query: 305 --------HVSRPAD----------------------LLPEIQGRFPVRVHLKSLNKSDF 334
                    V+ P D                      ++PE  GRFPV V   SLN S  
Sbjct: 480 SGNRRAVQSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSML 539

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  + L+ QYK L+  + + L F ED+++++A +A+  ++     GAR L+++ME
Sbjct: 540 VRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIME 594

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++L D  F       + V I  E VR  
Sbjct: 595 QLLLDPMFIVPGSDIRGVHITGECVRGQ 622



 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 188 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 222


>gi|78188166|ref|YP_378504.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           chlorochromatii CaD3]
 gi|78170365|gb|ABB27461.1| ClpX, ATPase regulatory subunit [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 136/327 (41%), Gaps = 69/327 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++     S    ++ +  +     N  + G    G   L++  + ++          
Sbjct: 115 HYKRIESHNTSAALDEVVIEKS-----NILLLGPTGTGKTLLAQTLANLLDVPFSIVDAT 169

Query: 211 SVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
           S+ +        E+   RL+       +  +     GI+++DE DKI  + +   I   V
Sbjct: 170 SLTEAGYVGDDVETILARLLHASDFDLERTER----GIIYVDEIDKIARKSANVSITRDV 225

Query: 267 SREGVQRDLLPLVEGSSV--STKYG---------SINTDHILFIASGAF---------HV 306
           S EGVQ+ LL ++EG+ V    K G         ++NT +ILFI  GAF          V
Sbjct: 226 SGEGVQQGLLKILEGAVVGVPPKGGRKHPEQPLINVNTKNILFICGGAFEGIDKIIARRV 285

Query: 307 SRPA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRL 336
           S+ +                               L+PE  GR PV   L  L++     
Sbjct: 286 SKSSMGFGAKVKSSSMDYDPDILRQVMQDDLHEYGLIPEFIGRLPVISTLDMLDEKALHN 345

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + ++ +  QYK+L   +G+ L+FT+++++ + ++A    +     GAR L++V+E V
Sbjct: 346 ILVEPKNAITKQYKKLFDMDGVELEFTDEALEKVVNIAKERGT-----GARALRSVLESV 400

Query: 397 LEDISFSASDLQEK-TVVIDAEYVRLH 422
           + DI +    ++E    ++ AE +   
Sbjct: 401 MIDIMYEIPSMKETHKCIVTAETIEQK 427



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 17/292 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTG 63
           SP+ IV  LD+Y++GQ+ AK+++A+A+ N ++R +      A     +   NILL+GPTG
Sbjct: 86  SPKAIVDVLDQYVVGQERAKKSLAVAVYNHYKRIESHNTSAALDEVVIEKSNILLLGPTG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +   +  + R    
Sbjct: 146 TGKTLLAQTLANLLDVPFSIVDATSLTEAGYVGDDVETILARLLHASDFDLERTERGIIY 205

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +A   I   + G+       ++    +            E    + +  N
Sbjct: 206 VDEIDKIARKSANVSITRDVSGEGVQQGLLKILEGAVVGVPPKGGRKHPEQPLINVNTKN 265

Query: 179 FDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                G +   ++  ++   SK       K    S+      L +      +  D +H  
Sbjct: 266 ILFICGGAFEGIDKIIARRVSKSSMGFGAKVKSSSMDYDPDILRQ------VMQDDLHEY 319

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            +       +  +   D +  +   N +   +  + +    L +   V  ++
Sbjct: 320 GLIPEFIGRLPVISTLDMLDEKALHNILVEPKNAITKQYKKLFDMDGVELEF 371


>gi|332291466|ref|YP_004430075.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169552|gb|AEE18807.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 410

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 65/319 (20%)

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
              +D +I+I+        SN  + G    G   +++  ++++           + +   
Sbjct: 96  QPATDDDIEIQK-------SNIVMVGQTGTGKTLIAKTIARMLNVPLAIVDATVLTEAG- 147

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDL 275
            +  D    L  +      +++  +  GIVF+DE DKI  +     I   VS EGVQ+ L
Sbjct: 148 YVGEDVESILTRLLQAADYNLEKAQ-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQAL 206

Query: 276 LPLVEGSSVST-----------KYGSINTDHILFIASGAF-----HVSR----------- 308
           L L+EG+ V+            K+  ++T++ILFIA GAF     H+S+           
Sbjct: 207 LKLLEGTVVNVPPKGGRKHPDQKFIEVDTENILFIAGGAFDGIERHISKRLNMQAMGFVA 266

Query: 309 -----------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                            P DL     +PEI GR PV  H+  L+    R ILT+ ++ +I
Sbjct: 267 SKSEDVVEKDNMLKYIIPKDLKDFGLIPEIIGRLPVLTHMDPLDAGTLRAILTEPKNAII 326

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L   + I L  T++++D +   A+        +GAR L+++ E +L D  F    
Sbjct: 327 KQYKKLFSMDDIELTITDEALDYMVGKAIEYK-----LGARGLRSLCEAILTDAMFDLPS 381

Query: 407 LQEKTVVIDAEYVRLHIGD 425
             EK++ +   Y    +  
Sbjct: 382 SDEKSLNVTKTYAEGKLNK 400



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 7/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD Y+IGQ+  KR +++A+ N ++R   PA   D E+   NI++VG TG GK
Sbjct: 61  KPQEIKEFLDGYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R     DE
Sbjct: 121 TLIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQRGIVFIDE 180

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + A  +    I   + G+       ++    + +          +      D  N   
Sbjct: 181 IDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEVDTENILF 240

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I GGA  GI         +   G        V +    L       L D
Sbjct: 241 IAGGAFDGIERHISKRLNMQAMGFVASKSEDVVEKDNMLKYIIPKDLKD 289


>gi|170591731|ref|XP_001900623.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brugia malayi]
 gi|158591775|gb|EDP30378.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative
           [Brugia malayi]
          Length = 465

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 57/325 (17%)

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           +IL    G +    T    +K +R     DK+ D+         SN  + G + VG   L
Sbjct: 134 KILQKSNGISKPHGTISFNKKSIRALMEMDKDNDL-------GKSNILLMGPSGVGKTYL 186

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGI 246
           +++ ++++         + +  C   L+        D+DTV +  +   +        GI
Sbjct: 187 TQILAEILD--------VPIAMCDCTLLTQSGYVGDDVDTVIQKLLANADGDIDATQRGI 238

Query: 247 VFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTKY-------GSINTDHI 296
           VFLDEFDKI +    +S +   V   GVQ+  L LVEG++V  K          ++T +I
Sbjct: 239 VFLDEFDKISSSLDLESRSFRDVGGRGVQQAFLKLVEGTAVKVKQPGSNGTRVDVDTTNI 298

Query: 297 LFIASGAFH---------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335
           LFIASGAF+                           +LPE+ GRFPV V   SL +    
Sbjct: 299 LFIASGAFNNLDRIISQRLYKKLVGFGTGKDKEKFGMLPELVGRFPVLVPFTSLTEELLV 358

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            I+ + +S+++ Q ++    + I L FT+ ++  +A  A    +     GAR L+++ E+
Sbjct: 359 RIMKEPKSSIVSQAEKQFLLDNIQLCFTDCALKEIARTAAQKGT-----GARALRSITEK 413

Query: 396 VLEDISFSASDLQEKTVVIDAEYVR 420
           VL D  +         +VIDA+ V+
Sbjct: 414 VLLDAKYDLPGTDIHKLVIDADVVK 438



 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           R  +  D  ++L   NILL+GP+GVGKT +++ LA +   P    + T  T+ GYVG +V
Sbjct: 157 RALMEMDKDNDLGKSNILLMGPSGVGKTYLTQILAEILDVPIAMCDCTLLTQSGYVGDDV 216

Query: 100 EQIIRDLVDVAINIVRESRRDEV 122
           + +I+ L+  A   +  ++R  V
Sbjct: 217 DTVIQKLLANADGDIDATQRGIV 239


>gi|329667519|gb|AEB93467.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii DPC 6026]
          Length = 421

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+   T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDIERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY++L+  + + L+FT+ ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 329 VKQYEKLLSLDDVDLEFTDGALQAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 -DLQEKTVVIDAEYVRLH 422
            D   K V I  + +  H
Sbjct: 384 SDDNIKEVQITKDVITKH 401



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYEKLLSLDDVDLEF 345


>gi|311086201|gb|ADP66283.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 429

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 66/305 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
             SN  + G    G   L++  +K++          ++ +        E    +L+    
Sbjct: 116 GKSNILLIGPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQK-- 173

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
             + +++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S     
Sbjct: 174 -CKYNVKKAE-LGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQG 231

Query: 287 -------KYGSINTDHILFIASGAFH-----VSRPAD----------------------- 311
                  ++  +NT +ILFI +GAF      VS+  D                       
Sbjct: 232 GRKHPQQEFLQVNTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKGKKQKKSEDFL 291

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E +
Sbjct: 292 LKQVEPEDLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+F  +SI  +A  A+N N+     GAR L++++E +L +I +    +   + ++I+  
Sbjct: 352 KLEFNAESIQLIAKKAINKNT-----GARGLRSIIEGILLNIMYELPSMVNIEKILINES 406

Query: 418 YVRLH 422
            V  +
Sbjct: 407 VVNSN 411



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQKCKYNVKKAEL 183

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    L            +      
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + SN       +     LS++ SK + +G +   + +++    +   D   + ++ + + 
Sbjct: 244 NTSNILFICAGAF--SELSKIVSKRLDAGTEIGFKANIKGKKQKKSEDFLLKQVEPEDLI 301

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +  +       +  +   +K+      N +   +  + +    L E  +V  ++
Sbjct: 302 KFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEF 355


>gi|295132507|ref|YP_003583183.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda
           SM-A87]
 gi|294980522|gb|ADF50987.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda
           SM-A87]
          Length = 410

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 140/348 (40%), Gaps = 70/348 (20%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +E I+     K   S       K+L   +  D   DIE+  +     N  + G    G  
Sbjct: 70  DEYIIGQEATKKVMSVAVYNHYKRLLQPDSDD---DIEIQKS-----NIVMVGETGTGKT 121

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVF 248
            +++  +K++           + +        E    RL+     + D  Q     GIVF
Sbjct: 122 LMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNVDKAQR----GIVF 177

Query: 249 LDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDH 295
           +DE DKI  +     I   VS EGVQ+ LL L+EG++V+            K+  ++T++
Sbjct: 178 IDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEVDTEN 237

Query: 296 ILFIASGA------------------FHVSRPAD--------------------LLPEIQ 317
           ILFIA GA                  F  S+  D                    L+PEI 
Sbjct: 238 ILFIAGGAFDGIEKNISKRLNMQAVGFSASKSDDNIERTNLLKYIIPKDLKDFGLIPEII 297

Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377
           GR P   ++  L++   R ILT+ ++ +I QY +L + + I    T++++D + + AV  
Sbjct: 298 GRLPALTYMNPLDQETLRSILTEPKNAIIKQYTKLFEMDEIEFTATDEALDFIVEKAVEY 357

Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
                 +GAR L+++ E +L D  F   +       +  EY    +  
Sbjct: 358 K-----LGARGLRSLCEAILTDAMFDLPESDVTEFTLTREYAEEKLNK 400



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+ I + LD YIIGQ+  K+ +++A+ N ++R   P    D E+   NI++VG TG GK
Sbjct: 61  KPKSIKAFLDEYIIGQEATKKVMSVAVYNHYKRLLQPDSDDDIEIQKSNIVMVGETGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A++   P   V+ T  TE GYVG +VE I+  L+  A   V +++R  V
Sbjct: 121 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNVDKAQRGIV 176


>gi|295425157|ref|ZP_06817862.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065216|gb|EFG56119.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 422

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 60/331 (18%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
             +T+ V    + +      ++DI+ + T    SN  + G    G   L++  +K++   
Sbjct: 78  QDHTKRVLSVAVYNHYKRIGQMDID-SSTQLQKSNIALIGPTGSGKTYLAQTLAKILIVP 136

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263
                  ++ +    +  D  + L+ +       I+  +  GI+++DE DKI  +     
Sbjct: 137 FAIADATTLTEAG-YVGEDVENILLKLLQNADYDIESAQ-RGIIYIDEIDKISKKAENVS 194

Query: 264 I--GVSREGVQRDLLPLVEGS--SVSTKYGS---------INTDHILFIASGAF------ 304
           I   VS EGVQ+ LL ++EG+  SV  + G          ++T +ILFI  GAF      
Sbjct: 195 ITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIRMDTTNILFIVGGAFDGIEQI 254

Query: 305 ---------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                                      H     DL     +PE  GR PV   L  L+  
Sbjct: 255 VKNRLGKKTIGFGAENEVNKIDADDWTHYLTTGDLVKFGMIPEFIGRIPVISTLDKLDSD 314

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   ILT+ ++ L+ QY++L+  + + L FT+ ++ A+AD+A+  N     +GAR L+T+
Sbjct: 315 DLVRILTEPKNALVKQYQKLLSLDDVQLTFTDGALHAIADLAIERN-----MGARGLRTI 369

Query: 393 MERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           +E  L DI +      + + V +  + +  H
Sbjct: 370 IENALIDIMYRTPSENDIEKVEVTKDVITRH 400



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 114/291 (39%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P +I  +LD Y+IGQ   KR +++A+ N ++R  Q+  D   +L   NI L+GPTG GK
Sbjct: 63  KPMDIKKQLDDYVIGQDHTKRVLSVAVYNHYKRIGQMDIDSSTQLQKSNIALIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLAKILIVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIESAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIR 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E ++ ID D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVNK-IDADDWTHYLTTGDLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ + D    +   +  + +    L+    V   +
Sbjct: 294 MIPEFIGRIPVISTLDKLDSDDLVRILTEPKNALVKQYQKLLSLDDVQLTF 344


>gi|124021783|ref|YP_001016090.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9303]
 gi|166214802|sp|A2C5R5|CLPX_PROM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123962069|gb|ABM76825.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9303]
          Length = 452

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 131/337 (38%), Gaps = 73/337 (21%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D + + +++ T    SN  + G    G   L++  ++++          ++ +       
Sbjct: 121 DGQGETDLSATRLHKSNILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGED 180

Query: 222 DESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            E+  L     + + +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 181 VENILL----RLLQKADMDVEHAQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLK 236

Query: 278 LVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR------PAD 311
           ++EG+  +                I+T  ILFI  GAF          + R      P+D
Sbjct: 237 MLEGTVANVPPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQRRLGRNAIGFMPSD 296

Query: 312 -----------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                        L+PE  GR PV   L+ L+      ILT+  
Sbjct: 297 GRGRSRANRDLKASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPR 356

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
             L+ Q+  L+  + + L+F  D+++A+A  A    +     GAR L+ ++E ++ D+ +
Sbjct: 357 DALVKQFSTLLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411

Query: 403 SASDLQE-KTVVIDAEYVRLHIG----DFPSETDMYH 434
                +  K   +    V  H G      P+  +  H
Sbjct: 412 DLPSKKNVKKFTVTRTMVDEHTGGKVLPLPANDERSH 448



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 19/240 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            P+EI + LD+ ++GQ+ AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 83  KPQEIKNFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIG 142

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V  ++R 
Sbjct: 143 PTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQRG 202

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    + +                 D
Sbjct: 203 IIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQID 262

Query: 176 ISNF-DIPGGASVGILNL------SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            S    I GGA +G+ ++            +   GR +       K    L   E+D L+
Sbjct: 263 TSQILFICGGAFIGLEDVVQRRLGRNAIGFMPSDGRGRSRANRDLKASQVLHHLEADDLV 322


>gi|210634105|ref|ZP_03297993.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279]
 gi|210158956|gb|EEA89927.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279]
          Length = 471

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 65/310 (20%)

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E D+E+A +     N  + G    G   L++  ++V+          ++ +    +  D 
Sbjct: 157 EEDVELAKS-----NILLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAG-YVGEDV 210

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L+ +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG
Sbjct: 211 ENILLKLINAADGDIDRAQI-GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEG 269

Query: 282 SSVST-----------KYGSINTDHILFIASGAF-------------------------- 304
           +  S            +   I+T +ILFI  GAF                          
Sbjct: 270 TVASVPPTGGRKHPQQELLQIDTTNILFICGGAFVGLDKIISDRVGNQGVGFNSEIAGPT 329

Query: 305 --------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                       P DL     +PE  GR PV    ++L + D  +ILT+  + ++ QY+ 
Sbjct: 330 SKDENILLKQVLPEDLNNFGMIPEFIGRTPVITQTQALTEDDLVMILTEPRNAVVKQYRR 389

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-K 410
           +   E + L F ++++  +A  A+   +     GAR L+++ E VL+   F     +   
Sbjct: 390 MFAMENVELVFEDEALHEIAKKALARKT-----GARGLRSICEEVLQQTMFDLPSEEGVS 444

Query: 411 TVVIDAEYVR 420
            VV+ A   R
Sbjct: 445 KVVVTAAAAR 454



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 18/202 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-------------DELMPK 54
           +P EI   L  Y++GQ+DAKRA+++A+ N +RR     D                EL   
Sbjct: 106 TPHEIYDALSLYVMGQEDAKRAMSVAVYNHYRRVLEGDDADKAHGAHAASFEEDVELAKS 165

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L++ A   +
Sbjct: 166 NILLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLINAADGDI 225

Query: 115 RESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
             ++      DE+ + A       I   + G+       ++    +     +      + 
Sbjct: 226 DRAQIGIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQ 285

Query: 170 ADTSSDISNFDIPGGASVGILN 191
                D +N     G +   L+
Sbjct: 286 ELLQIDTTNILFICGGAFVGLD 307


>gi|327183368|gb|AEA31815.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1118]
          Length = 423

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDIERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          ++T +ILFI  GAF                                
Sbjct: 221 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  LN  D   +LT+ ++ L+ QYK+L+  +G+
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ ++V +  +
Sbjct: 341 DLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIESVEVTKD 395

Query: 418 YVRLH 422
            +  H
Sbjct: 396 VITKH 400



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 118/291 (40%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E+D+ +D D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADK-VDADDWTRHLTTADLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ + D    +   +  + +    L+    V  K+
Sbjct: 294 MIPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKF 344


>gi|222151555|ref|YP_002560711.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus
           caseolyticus JCSC5402]
 gi|222120680|dbj|BAH18015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus
           caseolyticus JCSC5402]
          Length = 421

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 142/322 (44%), Gaps = 65/322 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++ +    +  ++I+        SN  + G    G   L++  ++ +          
Sbjct: 93  HYKRIFNPLNDEDGVEIQK-------SNIALIGPTGSGKTLLAQTLARSLNVPFAIADAT 145

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 146 SLTEAG-YVGEDVENILLRLIQAADFDVERAEK-GIIYVDEIDKIARKSENTSITRDVSG 203

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S            ++  I+T +ILFI  GAF             
Sbjct: 204 EGVQQALLKILEGTVASVPPQGGRKHPNQEFIQIDTTNILFILGGAFDGIDEVIKRRLGE 263

Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                 +P DL     +PE  GR PV  +L+ L+    + ILT 
Sbjct: 264 KVIGFTGIKEQGIDEATLLSQIKPEDLQSYGLIPEFIGRIPVVANLEQLDVGALKNILTQ 323

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QYK++++ + + L+FT++++ A++++A+   +     GAR L++++E  + ++
Sbjct: 324 PKNALVKQYKKMLEIDDVTLEFTDEALTAISELAIERKT-----GARGLRSIIEESMLEV 378

Query: 401 SFSASDLQE-KTVVIDAEYVRL 421
            FS     + K V+I  E +  
Sbjct: 379 MFSIPSRTDVKKVIITKETIED 400



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           ++T    P E+++ LD Y+IGQ  AK+A+A+A+ N ++R   P +  D  E+   NI L+
Sbjct: 58  EITEIPKPHEMMALLDAYVIGQDKAKKALAVAVYNHYKRIFNPLNDEDGVEIQKSNIALI 117

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  + +
Sbjct: 118 GPTGSGKTLLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLRLIQAADFDVERAEK 177

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    +                   
Sbjct: 178 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQI 237

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 238 DTTNILFILGGAFDGID 254


>gi|315038089|ref|YP_004031657.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325956542|ref|YP_004291954.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
 gi|312276222|gb|ADQ58862.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           amylovorus GRL 1112]
 gi|325333107|gb|ADZ07015.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus 30SC]
          Length = 423

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDIERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          ++T +ILFI  GAF                                
Sbjct: 221 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  LN  D   +LT+ ++ L+ QYK+L+  +G+
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ ++V +  +
Sbjct: 341 DLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIESVEVTKD 395

Query: 418 YVRLH 422
            +  H
Sbjct: 396 VITKH 400



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 118/291 (40%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E+D+ +D D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADK-VDADDWTRHLTTADLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ + D    +   +  + +    L+    V  K+
Sbjct: 294 MIPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKF 344


>gi|300361498|ref|ZP_07057675.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354117|gb|EFJ69988.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           gasseri JV-V03]
          Length = 421

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+ + T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDLERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIITTLDKLSTEDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FT+ ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 329 VKQYKKLLSLDNVDLEFTDGALKAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 DLQ-EKTVVIDAEYVRLH 422
                + V +  + +  H
Sbjct: 384 SEDNIEKVEVTKDVITKH 401



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 121/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+   +V  ++
Sbjct: 297 PEFIGRIPIITTLDKLSTEDLIRILTEPKNALVKQYKKLLSLDNVDLEF 345


>gi|195157162|ref|XP_002019465.1| GL12413 [Drosophila persimilis]
 gi|194116056|gb|EDW38099.1| GL12413 [Drosophila persimilis]
          Length = 666

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 79/268 (29%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI           V  EGVQ+ +L ++EG
Sbjct: 360 DIESVISKLLQDANYNVDRAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEG 419

Query: 282 SSVSTKYG-----------SINTDHILFIASGAF-------------------------- 304
           + V+                ++T +ILF+ASGA+                          
Sbjct: 420 TVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSG 479

Query: 305 --------HVSRPAD----------------------LLPEIQGRFPVRVHLKSLNKSDF 334
                    V+ P D                      ++PE  GRFPV V   SLN S  
Sbjct: 480 SGNRRAVQSVAAPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSML 539

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+  + L+ QYK L+  + + L F ED+++++A +A+  ++     GAR L+++ME
Sbjct: 540 VRILTEPRNALVPQYKALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIME 594

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLH 422
           ++L D  F       + V I  E VR  
Sbjct: 595 QLLLDPMFIVPGSDIRGVHITGECVRGQ 622



 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           ++I+  LD++++GQ  AK+ +A+A+ N ++R    
Sbjct: 188 QKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHN 222


>gi|325261873|ref|ZP_08128611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
 gi|324033327|gb|EGB94604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium
           sp. D5]
          Length = 486

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 63/319 (19%)

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
           +D   +IE+  +     N  + G    G   L +  ++++          S+ +     +
Sbjct: 170 TDSMDEIEIEKS-----NMLMIGPTGSGKTYLVKTLARLLDVPLAITDATSLTEA--GYI 222

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            D+ + ++       D+       GI+F+DE DKI  + + +   VS E VQ+ LL L+E
Sbjct: 223 GDDIESVVSKLLAAADNEVERAERGIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLE 282

Query: 281 GSSVSTKYG-----------SINTDHILFIASGAF------------------------- 304
           GS V    G           ++NT +ILFI  GAF                         
Sbjct: 283 GSEVEVPVGANSKNAMVPLATVNTKNILFICGGAFPDLEDIIKERLSHKTSMGFNAELKD 342

Query: 305 --------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                            R   ++PE  GR P+   LK L+K     IL +  + ++ QYK
Sbjct: 343 KYEKDKDILSKVTMEDLRTFGMIPEFIGRLPIIFTLKGLDKEMLVQILKEPRNAILKQYK 402

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQE 409
           +L+  + + L+F E +++A+A+ A+  N+     GAR L+ ++E  + DI +    D   
Sbjct: 403 KLLALDEVNLEFDEGALEAIAEKAMKKNT-----GARALRAIIEEFMLDIMYEIPKDDNI 457

Query: 410 KTVVIDAEYVRLHIGDFPS 428
             V I  +Y+    G    
Sbjct: 458 GQVTITRQYIEGTGGPIIQ 476



 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 68/111 (61%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I ++LD Y++GQ+ AK+A+++A+ N ++R    +    E+   N+L++GPTG GKT 
Sbjct: 136 PHKIKAQLDEYVVGQEYAKKAMSVAVYNHYKRVATDSMDEIEIEKSNMLMIGPTGSGKTY 195

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           + + LARL   P    + T  TE GY+G ++E ++  L+  A N V  + R
Sbjct: 196 LVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNEVERAER 246


>gi|326790231|ref|YP_004308052.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           lentocellum DSM 5427]
 gi|326540995|gb|ADZ82854.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium
           lentocellum DSM 5427]
          Length = 428

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 66/323 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +      K  D+EV  +     N  + G    G   L++  +K++          S+
Sbjct: 92  NHYKRIYKQSKSNDVEVQKS-----NILLLGPTGTGKTLLAQTLAKMLNVPFAVADATSL 146

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EG
Sbjct: 147 TEAG-YVGEDVENILLKLIQAANYDVEKAQ-LGIIYIDEIDKISRKSENPSITRDVSGEG 204

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG+  S            ++  I+T +ILFI  GAF               
Sbjct: 205 VQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGLDKIIERRVGQKS 264

Query: 306 -------VSR-------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                  VS+             P DL     +PE  GR P  V L +L+K     ILT+
Sbjct: 265 MGFGANIVSKKEKSIGELFKQIEPQDLVKFGLIPEFVGRIPSIVSLNNLDKEALIKILTE 324

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L  QY+ L + +GI L+F E+++ A+A++A+   +     GAR L+ + E ++ +I
Sbjct: 325 PKNALTKQYEHLFELDGIKLEFEEEALVAVAELAIERET-----GARGLRAIFETMMRNI 379

Query: 401 SFSASDLQE--KTVVIDAEYVRL 421
            + A  + +  + ++I A+ ++ 
Sbjct: 380 MYDAPSMGDALEKIIIHADVIKE 402



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 19/259 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI + LD Y+IGQ+DAK+A+A+A+ N ++R    +   D E+   NILL+GPTG GK
Sbjct: 64  KPKEIKAHLDEYVIGQEDAKKALAVAVYNHYKRIYKQSKSNDVEVQKSNILLLGPTGTGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V +++      DE
Sbjct: 124 TLLAQTLAKMLNVPFAVADATSLTEAGYVGEDVENILLKLIQAANYDVEKAQLGIIYIDE 183

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+       ++    +                   D +N   
Sbjct: 184 IDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQIDTTNILF 243

Query: 181 IPGGASVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVHR 235
           I GGA  G+  + E      S   G+    K   S+ + + ++   +  +  +  + V R
Sbjct: 244 ICGGAFDGLDKIIERRVGQKSMGFGANIVSKKEKSIGELFKQIEPQDLVKFGLIPEFVGR 303

Query: 236 DSIQMVENYGIVFLDEFDK 254
                     IV L+  DK
Sbjct: 304 -------IPSIVSLNNLDK 315


>gi|257468339|ref|ZP_05632433.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062613|ref|ZP_07927098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688289|gb|EFS25124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           ulcerans ATCC 49185]
          Length = 416

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 60/356 (16%)

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
              +E++ + ++G+  T     V         +     + E  +     SN  + G    
Sbjct: 65  KEIKEKLDEYVIGQDETKKILSVAVYNHYKRILDKNTQENEDNNVELQKSNVLLIGPTGS 124

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G   L++  ++ +          ++ +    +  D  + L+ +       +   E  GI+
Sbjct: 125 GKTLLAQTLARCLSVPFAIADATTLTEAG-YVGDDVENVLVRLLQAADYDVDAAE-RGII 182

Query: 248 FLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG---------SINTD 294
           ++DE DKI  +     I   VS EGVQ+ LL ++EG+   V  + G          I+T 
Sbjct: 183 YIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKHPNQELIEIDTA 242

Query: 295 HILFIASGAFHVSR----------------------------------PADL-----LPE 315
           +ILFI  GAF                                      P DL     +PE
Sbjct: 243 NILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETDERVGEVFIKVLPEDLVRQGIIPE 302

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           + GR PV   LK L++     ILT+ ++ ++ QYK+L   EG+ L+FT +++  +A +A+
Sbjct: 303 LVGRLPVITTLKDLDEKALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAVLAL 362

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGDFPSET 430
                   IGAR L+ ++E+ + ++ +    D     V I  E V         + 
Sbjct: 363 ERK-----IGARGLRAIIEQTMLELMYEVPSDDSISKVTIGEEAVLDSTKAIIEKE 413



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGP 61
            +P+EI  +LD Y+IGQ + K+ +++A+ N ++R      Q   D   EL   N+LL+GP
Sbjct: 62  LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILDKNTQENEDNNVELQKSNVLLIGP 121

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  + R
Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAADYDVDAAER 179


>gi|309790147|ref|ZP_07684719.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6]
 gi|308227732|gb|EFO81388.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6]
          Length = 431

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 126/309 (40%), Gaps = 61/309 (19%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +V D     SN  + G    G   L++  ++++          ++ +    +  D  + L
Sbjct: 111 KVDDVELSKSNILLLGPTGSGKTLLAQTLARILDVPFAIADATALTEAG-YVGEDVENIL 169

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG    
Sbjct: 170 LRLIQAADGDIERAQ-SGIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGVAH 228

Query: 286 T-----------KYGSINTDHILFIASGAFHVSR-------------------------- 308
                       +Y S +T ++LFI  GAF                              
Sbjct: 229 VPPLPGRKHPQQEYISFDTTNVLFICGGAFEGVEEIISQRMRGKSTIGFTSQHIHEDLSE 288

Query: 309 --------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                             +PE  GR PV V L+ L       ILT+  + ++ QY++L+ 
Sbjct: 289 HARLLSQLNQDDLLHYGFIPEFIGRVPVIVALEPLTTQAMLRILTEPRNAVVKQYQKLLA 348

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVV 413
            + + L+ T D++DA+ + A+   +     GAR L++++E VL D+ +     +     +
Sbjct: 349 LDHVDLEITPDALDAIVEQAMQAKT-----GARALRSIVEAVLLDVMYEVPAQEHIGRCI 403

Query: 414 IDAEYVRLH 422
           I+AE V+  
Sbjct: 404 INAEVVQGR 412



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 9/231 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++  +LD+Y+IGQ  AK  +++A+ N ++R +  A + D EL   NILL+GPTG GK
Sbjct: 73  TPRKLREKLDQYVIGQDRAKIVLSVAVYNHYKRIKAGAKVDDVELSKSNILLLGPTGSGK 132

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++      DE
Sbjct: 133 TLLAQTLARILDVPFAIADATALTEAGYVGEDVENILLRLIQAADGDIERAQSGIIYIDE 192

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FD 180
           + + A       I   + G+       ++    +            +    S D +N   
Sbjct: 193 IDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYISFDTTNVLF 252

Query: 181 IPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I GGA  G+  +    +  K       + I   + +    L +   D L+ 
Sbjct: 253 ICGGAFEGVEEIISQRMRGKSTIGFTSQHIHEDLSEHARLLSQLNQDDLLH 303


>gi|330814218|ref|YP_004358457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487313|gb|AEA81718.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 380

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 64/301 (21%)

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
           E  + + D+E+A +     N  + G    G   L++  ++++          ++ +    
Sbjct: 57  EGKNNKGDVELAKS-----NILLMGPTGCGKTLLAQTLARILDVPFTMADATTLTEAG-Y 110

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +  D  + ++ +      +++  +  GIV++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 111 VGEDVENIILKLLQAADYNVEKAQ-RGIVYIDEVDKISRKTENPSITRDVSGEGVQQALL 169

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF--------------------- 304
            ++EG+  S            ++  ++T +ILFI  GAF                     
Sbjct: 170 KIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGIDKIISSRDKGSSIGFGSK 229

Query: 305 -------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                            P DL     +PE  GR P+   L+ L++     IL + +++L 
Sbjct: 230 LNTKAEKKVGELLKSIEPEDLLKFGLIPEFIGRLPIISTLEDLDEDSLVKILEEPKNSLT 289

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QY +L + EG+ L+F++D++ A+A  A+   +     GAR L++++E VL +  F    
Sbjct: 290 KQYAKLFEIEGVKLNFSKDALKAIAGKAILRKT-----GARGLRSIIEEVLLETMFDLPS 344

Query: 407 L 407
           +
Sbjct: 345 I 345



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 13/233 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGPTGV 64
           SP+EI S LD Y+IGQ+ AK+ +++A+ N ++R            EL   NILL+GPTG 
Sbjct: 21  SPKEIFSTLDEYVIGQKTAKQILSVAVHNHYKRLNYEGKNNKGDVELAKSNILLMGPTGC 80

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   V +++R     
Sbjct: 81  GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQRGIVYI 140

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV + +       I   + G+       ++    +            +      D +N 
Sbjct: 141 DEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNI 200

Query: 180 -DIPGGASVGILNLSELFSK----VMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             I GGA  GI  +     K      GS    K    V +    +  ++  + 
Sbjct: 201 LFICGGAFAGIDKIISSRDKGSSIGFGSKLNTKAEKKVGELLKSIEPEDLLKF 253


>gi|309805711|ref|ZP_07699751.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|329921321|ref|ZP_08277759.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
 gi|308164964|gb|EFO67207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|328934613|gb|EGG31117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
          Length = 429

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 58/313 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 106 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 164

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 165 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 223

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 224 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 283

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 284 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVE 343

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 344 LEFSTDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398

Query: 419 VRLHIGDFPSETD 431
           +           D
Sbjct: 399 ITKASYPIIVFED 411



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 64  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 124 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 183

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 184 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 243

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 244 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 295

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 296 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEF 346


>gi|15617074|ref|NP_240287.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681826|ref|YP_002468212.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|257471528|ref|ZP_05635527.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11131711|sp|P57548|CLPX_BUCAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763838|sp|B8D9Q3|CLPX_BUCA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25296054|pir||E84985 hypothetical protein clpX [imported] - Buchnera sp. (strain APS)
 gi|10039139|dbj|BAB13173.1| ATP-dependent clp protease ATP-binding subunit clpX [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219624669|gb|ACL30824.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311087366|gb|ADP67446.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 429

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 66/305 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
             SN  + G    G   L++  +K++          ++ +        E    +L+    
Sbjct: 116 GKSNILLIGPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQK-- 173

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
             + +++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S     
Sbjct: 174 -CKYNVKKAE-LGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQG 231

Query: 287 -------KYGSINTDHILFIASGAFH-----VSRPAD----------------------- 311
                  ++  +NT +ILFI +GAF      VS+  D                       
Sbjct: 232 GRKHPQQEFLQVNTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFL 291

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E +
Sbjct: 292 LKQVEPEDLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+F  +SI  +A  A+N N+     GAR L++++E +L +I +    +   + ++I+  
Sbjct: 352 KLEFNAESIQLIAKKAMNKNT-----GARGLRSIIEGILLNIMYELPSMVNIEKILINES 406

Query: 418 YVRLH 422
            V  +
Sbjct: 407 VVNSN 411



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQKCKYNVKKAEL 183

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    L            +      
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + SN       +     LS++ SK + +G +   + ++++   +   D   + ++ + + 
Sbjct: 244 NTSNILFICAGAF--SELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLI 301

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +  +       +  +   +K+      N +   +  + +    L E  +V  ++
Sbjct: 302 KFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEF 355


>gi|311086778|gb|ADP66859.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 429

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 66/305 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
             SN  + G    G   L++  +K++          ++ +        E    +L+    
Sbjct: 116 GKSNILLIGPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQK-- 173

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
             + +++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S     
Sbjct: 174 -CKYNVKKAE-LGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQG 231

Query: 287 -------KYGSINTDHILFIASGAFH-----VSRPAD----------------------- 311
                  ++  +NT +ILFI +GAF      VS+  D                       
Sbjct: 232 GRKHPQQEFLQVNTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFL 291

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E +
Sbjct: 292 LKQVEPEDLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+F  +SI  +A  A+N N+     GAR L++++E +L +I +    +   + ++I+  
Sbjct: 352 KLEFNAESIQLIAKKAINKNT-----GARGLRSIIEGILLNIMYELPSMVNIEKILINES 406

Query: 418 YVRLH 422
            V  +
Sbjct: 407 VVNSN 411



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQKCKYNVKKAEL 183

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    L            +      
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + SN       +     LS++ SK + +G +   + ++++   +   D   + ++ + + 
Sbjct: 244 NTSNILFICAGAF--SELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLI 301

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +  +       +  +   +K+      N +   +  + +    L E  +V  ++
Sbjct: 302 KFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEF 355


>gi|309807958|ref|ZP_07701886.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168809|gb|EFO70899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
          Length = 433

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 58/309 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 110 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 169 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 227

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 228 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 287

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 288 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 348 LEFSSDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402

Query: 419 VRLHIGDFP 427
           +        
Sbjct: 403 ITKASDPII 411



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 68  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 128 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 187

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 188 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 247

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 248 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 299

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 300 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEF 350


>gi|325104588|ref|YP_004274242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
 gi|324973436|gb|ADY52420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter
           saltans DSM 12145]
          Length = 413

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 83/337 (24%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + ++   E++IE        SN  + G    G   L++  +K++         +    C 
Sbjct: 97  NQKVGKDEVEIEK-------SNIMMVGETGTGKTLLAKTIAKILN--------VPFCICD 141

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSR 268
             ++ +      D++++    +Q  +        GIV++DE DK+  +     I   VS 
Sbjct: 142 ATVLTEAGYVGEDVESILTRLLQAADYDVAAAERGIVYIDEVDKVARKSDNPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL ++EG+ V+            K   +NT++ILFI  GA              
Sbjct: 202 EGVQQALLKILEGTIVNVPPQGGRKHPDQKMIPVNTNNILFICGGAFDGIEKKIANRLRT 261

Query: 304 ------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                       +   L+PE+ GR PV  +L  L++     ILT
Sbjct: 262 QTVGYKFAKENDDIDINNLYKYITPQDLKSFGLIPELIGRVPVLTYLNPLDRETLLNILT 321

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +++LI QY++L + E I L+F+++  + + D A+        +GAR L+++ E ++ D
Sbjct: 322 EPKNSLIKQYQKLFEFEDIALEFSKEVYEFIVDKALEFK-----LGARGLRSICEAIMID 376

Query: 400 ISFSASD--LQEKTVVIDAEYVRLHIGDFPSETDMYH 434
             F       + K + ID +Y +        ++D+  
Sbjct: 377 AMFEIPSEKQKSKKLTIDLDYAKEKF----EKSDLKK 409



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 6/191 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
             P EI   LD+Y+IGQ  AK+ +++A+ N ++R          E+   NI++VG TG G
Sbjct: 62  LKPLEIKRHLDQYVIGQDSAKKVLSVAVYNHYKRLNQKVGKDEVEIEKSNIMMVGETGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 122 KTLLAKTIAKILNVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDVAAAERGIVYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    + +          +      + +N  
Sbjct: 182 EVDKVARKSDNPSITRDVSGEGVQQALLKILEGTIVNVPPQGGRKHPDQKMIPVNTNNIL 241

Query: 181 IPGGASVGILN 191
              G +   + 
Sbjct: 242 FICGGAFDGIE 252


>gi|302333340|gb|ADL23533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 420

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 143/327 (43%), Gaps = 63/327 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRLHIGDFPSETD 431
             +  T VVI A+ +         + +
Sbjct: 383 SNENVTKVVITAQTINEETEPELYDEE 409



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  ITELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|268319667|ref|YP_003293323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii FI9785]
 gi|262398042|emb|CAX67056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           johnsonii FI9785]
          Length = 421

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+   T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EG Q+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDIERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGGQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDVDDWQKNLTTGDLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FT+ ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 329 VKQYKKLLSLDDVDLEFTDGALQAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 -DLQEKTVVIDAEYVRLH 422
            D   + V I  + +  H
Sbjct: 384 SDDNIQEVQITKDVITKH 401



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGGQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEF 345


>gi|82751263|ref|YP_417004.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus RF122]
 gi|123547892|sp|Q2YTB5|CLPX_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|82656794|emb|CAI81223.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus RF122]
          Length = 420

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEDVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEETLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  ITELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|38234360|ref|NP_940127.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|61211524|sp|Q6NFU7|CLPX_CORDI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|38200623|emb|CAE50319.1| Putative ATPase [Corynebacterium diphtheriae]
          Length = 430

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 60/323 (18%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++R  E           +T    SN  + G    G   L++  ++++          
Sbjct: 95  HYKRVRAEESRTTHKRASEEETELQKSNILMLGPTGSGKTYLAQTLARLLDVPFAIADAT 154

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       +Q  +  GI+++DE DKI  +     I   VS 
Sbjct: 155 SLTEAG-YVGEDVENILLKLLQAADFDVQRAQ-RGIIYVDEVDKISRKSDNPSITRDVSG 212

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI +GAF             
Sbjct: 213 EGVQQALLKILEGTVASIPPQGGRKHPNQDFIQLDTSNILFIVAGAFAGLEKVIEERRGK 272

Query: 305 ---------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL     +PE  GR P+   + +L+++    +L
Sbjct: 273 KGIGFGAELTTKADTDAVDVFRDVLPEDLVKFGLIPEFIGRLPIVATVNNLDQASLVKVL 332

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  ++L+ QY+ L   + + L+F  +++ A+AD+A++  +     GAR L+ +ME +L 
Sbjct: 333 TEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGT-----GARGLRAIMEELLV 387

Query: 399 DISFSASDLQEKTVV-IDAEYVR 420
            + +   D ++  VV I+   VR
Sbjct: 388 PVMYDIPDREDVAVVRINEAAVR 410



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------DLRDELMPKNILLV 59
           P +I + LD+Y+IGQ DAKR +++A+ N ++R +            +   EL   NIL++
Sbjct: 67  PSQISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRTTHKRASEEETELQKSNILML 126

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LARL   PF   + T  TE GYVG +VE I+  L+  A   V+ ++R
Sbjct: 127 GPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQR 186


>gi|289550569|ref|YP_003471473.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658064|ref|ZP_07910936.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           lugdunensis M23590]
 gi|289180101|gb|ADC87346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496393|gb|EFU84716.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           lugdunensis M23590]
          Length = 420

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 142/325 (43%), Gaps = 65/325 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++    ++ E++++        SN  + G    G   L++  +K +          
Sbjct: 92  HYKRIQQLGPNEDEVELQK-------SNIALIGPTGSGKTLLAQTLAKTLNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS 
Sbjct: 145 SLTEAG-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL ++EG++ S            +   I+T +ILFI  GAF             
Sbjct: 203 EGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTNILFILGGAFDGIEEVIKRRLGE 262

Query: 306 --------------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                 RP DL     +PE  GR PV  +L++L+    + ILT 
Sbjct: 263 KVIGFASNEADKYDEEALLAQIRPEDLQAYGLIPEFIGRVPVVANLETLDVKALKNILTQ 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY ++++ + + L+FT+D++ A+++ A+   +     GAR L++++E  L +I
Sbjct: 323 PKNALVKQYTKMLELDNVDLEFTDDALSAISEKAIERKT-----GARGLRSIIEEALINI 377

Query: 401 SFSASDLQEK-TVVIDAEYVRLHIG 424
            +     +    VVI ++ +   I 
Sbjct: 378 MYDVPSTENVFKVVITSDTINNEIE 402



 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           + T   +P+EI++ L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+
Sbjct: 57  EFTEVPTPKEIMAHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++                        
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   + 
Sbjct: 237 DTTNILFILGGAFDGIE 253


>gi|189499644|ref|YP_001959114.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides BS1]
 gi|238692274|sp|B3ENA3|CLPX_CHLPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189495085|gb|ACE03633.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium
           phaeobacteroides BS1]
          Length = 437

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 134/322 (41%), Gaps = 65/322 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E    + D+ +  +     N  + G    G   L++  + ++          
Sbjct: 109 HYKRIESQEWVRDDDDVVIEKS-----NILLIGPTGTGKTLLAQTLANLLEVPFTIVDAT 163

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS 
Sbjct: 164 SLTEAG-YVGDDVETILARLLQASDFNLERAEK-GIIYVDEIDKIARKSANVSITRDVSG 221

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+ V             +  ++NT +ILFI  GAF          V++
Sbjct: 222 EGVQQALLKILEGAVVGVPPRGGRKHPEQQLINVNTRNILFICGGAFEGLDKIIGRRVAK 281

Query: 309 PA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
            +                               L+PE  GR PV   L  L+    R IL
Sbjct: 282 ASIGFGTAVKAQQLESDPEILKEVSQDDMHEYGLIPEFIGRLPVISTLDPLDSKALRNIL 341

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            + ++ LI QY++L + E   L F + ++D++ ++A++  +     GAR L++V+E ++ 
Sbjct: 342 VEPKNALIKQYQKLFEMEECELVFEDKALDSVVEIAIDRGT-----GARALRSVLEGIMI 396

Query: 399 DISFSASDLQE-KTVVIDAEYV 419
           DI F    +   +  VI    +
Sbjct: 397 DIMFELPSMSGVRKCVITEAVI 418



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 131/304 (43%), Gaps = 15/304 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62
            +P+ I+  L +Y+IGQ+ A++++++A+ N ++R +    +RD+    +   NILL+GPT
Sbjct: 79  LNPKSIMESLGQYVIGQERARKSLSVAVYNHYKRIESQEWVRDDDDVVIEKSNILLIGPT 138

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +   +  + +   
Sbjct: 139 GTGKTLLAQTLANLLEVPFTIVDATSLTEAGYVGDDVETILARLLQASDFNLERAEKGII 198

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +A   I   + G+       ++    +            E    + +  
Sbjct: 199 YVDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLINVNTR 258

Query: 178 NF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           N   I GGA  G+  +          G    ++    +  PE++++     +  D +H  
Sbjct: 259 NILFICGGAFEGLDKIIGRRVAKASIGFGTAVKAQQLESDPEILKE-----VSQDDMHEY 313

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
            +       +  +   D + ++   N +   +  + +    L E       +     D +
Sbjct: 314 GLIPEFIGRLPVISTLDPLDSKALRNILVEPKNALIKQYQKLFEMEECELVFEDKALDSV 373

Query: 297 LFIA 300
           + IA
Sbjct: 374 VEIA 377


>gi|309807089|ref|ZP_07701068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|309809314|ref|ZP_07703183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325912021|ref|ZP_08174423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
 gi|308166519|gb|EFO68719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|308170427|gb|EFO72451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325476206|gb|EGC79370.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
          Length = 433

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 58/309 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 110 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 169 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 227

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 228 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 287

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 288 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 348 LEFSSDALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402

Query: 419 VRLHIGDFP 427
           +        
Sbjct: 403 ITKASDPII 411



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 68  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 128 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 187

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 188 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 247

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 248 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 299

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 300 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEF 350


>gi|21283347|ref|NP_646435.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486501|ref|YP_043722.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300911694|ref|ZP_07129138.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|23813855|sp|Q8NW72|CLPX_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56748666|sp|Q6G8Q1|CLPX_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21204787|dbj|BAB95483.1| protease ClpX [Staphylococcus aureus subsp. aureus MW2]
 gi|49244944|emb|CAG43405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300887115|gb|EFK82316.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 420

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDNVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  MTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|27904899|ref|NP_778025.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|31076631|sp|Q89AA0|CLPX_BUCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|27904297|gb|AAO27130.1| putative ATP-dependent protease [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 428

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 120/306 (39%), Gaps = 74/306 (24%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  +K +          ++ +              D++ + 
Sbjct: 114 GKSNLLLIGPTGCGKTLLAETLAKFLDVPFSISDATTLTEA--------GYVGEDVENII 165

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S 
Sbjct: 166 QRLLQKCNYNIKKAETGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTLASV 225

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 226 PMQGGRKHPQQEFLKVDTSKILFICGGAFLGLNKIIEKRTKLGTKIGFNAKVNKNLKICS 285

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GR P+   L  L+K     IL++ ++ LI QY+ L K
Sbjct: 286 KDALMQQVIPEDLIKFGLIPEFIGRLPILTILHELDKKMLVKILSEPKNALIKQYQTLFK 345

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVV 413
            E + L      I+ +A  A+N N+     GAR L++++E +L D  +    +   KT++
Sbjct: 346 LEDVELKICTKVIEYIAQKAMNQNT-----GARGLRSIIEMLLLDTMYRLPSMTNIKTII 400

Query: 414 IDAEYV 419
           ID   +
Sbjct: 401 IDESTI 406



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 13/258 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI   LD YIIGQ   K+ +++A+ N ++R        +   EL   N+LL+GPTG 
Sbjct: 67  TPYEIFKHLDNYIIGQLHTKKVLSVAVYNHYKRLNHLNSKKNNNIELGKSNLLLIGPTGC 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT ++  LA+    PF   + T  TE GYVG +VE II+ L+      ++++       
Sbjct: 127 GKTLLAETLAKFLDVPFSISDATTLTEAGYVGEDVENIIQRLLQKCNYNIKKAETGIIYI 186

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+       ++    L    +       +      D S  
Sbjct: 187 DEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTLASVPMQGGRKHPQQEFLKVDTSKI 246

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               G +   L L+++  K    G K      V K      +D   + +  + + +  + 
Sbjct: 247 LFICGGAF--LGLNKIIEKRTKLGTKIGFNAKVNKNLKICSKDALMQQVIPEDLIKFGLI 304

Query: 240 MVENYG---IVFLDEFDK 254
                    +  L E DK
Sbjct: 305 PEFIGRLPILTILHELDK 322


>gi|255532967|ref|YP_003093339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter
           heparinus DSM 2366]
 gi|255345951|gb|ACU05277.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter
           heparinus DSM 2366]
          Length = 413

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 132/333 (39%), Gaps = 78/333 (23%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L        E++IE        SN  + G    G   L++  +K++         +
Sbjct: 92  HYKRLSQKVDKGDEVEIEK-------SNIMLVGETGTGKTLLAKTIAKILH--------V 136

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI 264
               C   ++ +      D++++    +Q  +        GIV++DE DK+  +     I
Sbjct: 137 PFCICDATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIVYIDEVDKVARKSDNPSI 196

Query: 265 --GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------- 303
              VS EGVQ+ LL ++EG+ V+            K   +NT++ILFI  GA        
Sbjct: 197 TRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIPVNTNNILFICGGAFDGIERKI 256

Query: 304 ------------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333
                                             +   L+PE+ GR PV  HL  L+K  
Sbjct: 257 ANRLRTQAVGYKVKKDDAELDLKNLYKYITPQDLKSFGLIPELIGRVPVLTHLNPLDKQA 316

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
            R ILT+ +++L  QY +L + E + L F  + +D + D A+        +GAR L+++ 
Sbjct: 317 LRNILTEPKNSLFRQYVKLFELENVKLTFDNEVLDFIVDKAMEYK-----LGARGLRSIC 371

Query: 394 ERVLEDISFSAS-DLQEKTVVIDAEYVRLHIGD 425
           E ++ D  F    D   K + I  +Y       
Sbjct: 372 EAIMLDAMFEIPSDTSVKELSITLDYAVEKFEK 404



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 15/263 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
             P EI + +D+Y+IGQ DAK+ +A+A+ N ++R     D  DE  +   NI+LVG TG 
Sbjct: 62  LKPLEIKAHIDQYVIGQDDAKKVLAVAVYNHYKRLSQKVDKGDEVEIEKSNIMLVGETGT 121

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     
Sbjct: 122 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIVYI 181

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV + A  +    I   + G+       ++    + +          +      + +N 
Sbjct: 182 DEVDKVARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIPVNTNNI 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI- 238
               G +   +       K+    R + +   V+K   EL      + I    +    + 
Sbjct: 242 LFICGGAFDGIE-----RKIANRLRTQAVGYKVKKDDAELDLKNLYKYITPQDLKSFGLI 296

Query: 239 --QMVENYGIVFLDEFDKIVARD 259
              +     +  L+  DK   R+
Sbjct: 297 PELIGRVPVLTHLNPLDKQALRN 319


>gi|311087864|gb|ADP67943.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 429

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 66/305 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
             SN  + G    G   L++  +K++          ++ +        E    +L+    
Sbjct: 116 GKSNILLIGPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQK-- 173

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
             + +++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S     
Sbjct: 174 -CKYNVKKAE-LGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQG 231

Query: 287 -------KYGSINTDHILFIASGAFH-----VSRPAD----------------------- 311
                  ++  +NT +ILFI +GAF      VS+  D                       
Sbjct: 232 GRKHPQQEFLQVNTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFL 291

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E +
Sbjct: 292 LKQVEPEDLIKFGLIPEFIGRLPIITILNKLTEDALVNILCTPKNALIKQYQTLFELENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+F  +SI  +A  A+N N+     GAR L++++E +L +I +    +   + ++I+  
Sbjct: 352 KLEFNAESIQLIAKKAMNKNT-----GARGLRSIIEGILLNIMYELPSMVNIEKILINES 406

Query: 418 YVRLH 422
            V  +
Sbjct: 407 VVNSN 411



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQKCKYNVKKAEL 183

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    L            +      
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + SN       +     LS++ SK + +G +   + ++++   +   D   + ++ + + 
Sbjct: 244 NTSNILFICAGAF--SELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLI 301

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +  +       +  +   +K+      N +   +  + +    L E  +V  ++
Sbjct: 302 KFGLIPEFIGRLPIITILNKLTEDALVNILCTPKNALIKQYQTLFELENVKLEF 355


>gi|219682381|ref|YP_002468765.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|254763839|sp|B8D805|CLPX_BUCAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|219622114|gb|ACL30270.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
          Length = 429

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 66/305 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
             SN  + G    G   L++  +K++          ++ +        E    +L+    
Sbjct: 116 GKSNILLIGPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQK-- 173

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST---- 286
             + +++  E  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  S     
Sbjct: 174 -CKYNVKKAE-LGIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQG 231

Query: 287 -------KYGSINTDHILFIASGAFH-----VSRPAD----------------------- 311
                  ++  +NT +ILFI +G F      VS+  D                       
Sbjct: 232 GRKHPQQEFLQVNTSNILFICAGTFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFL 291

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L +     IL   ++ LI QY+ L + E +
Sbjct: 292 LKQVEPEDLIKFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENV 351

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417
            L+F  +SI  +A  A+N N+     GAR L++++E +L +I +    +   + ++I+  
Sbjct: 352 KLEFNAESIQLIAKKAINKNT-----GARGLRSIIEGILLNIMYELPSMVNIEKILINES 406

Query: 418 YVRLH 422
            V  +
Sbjct: 407 VVNSN 411



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59
           K+ +   P EI   LD Y+IGQ   K+ +++A+ N ++R        D  EL   NILL+
Sbjct: 64  KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE +I+ L+      V+++  
Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLLQKCKYNVKKAEL 183

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    L            +      
Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           + SN       +     LS++ SK + +G +   + ++++   +   D   + ++ + + 
Sbjct: 244 NTSNILFICAGTF--SELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLI 301

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +  +       +  +   +K+      N +   +  + +    L E  +V  ++
Sbjct: 302 KFGLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEF 355


>gi|225465277|ref|XP_002268594.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 639

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 65/248 (26%)

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK--- 287
           V   +++  +  GIV++DE DKI  +      G  VS EGVQ+ LL ++EG+ V+     
Sbjct: 308 VAEFNVEAAQQ-GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKG 366

Query: 288 --------YGSINTDHILFIASGAF----------------------------------- 304
                      I+T  ILFI  GAF                                   
Sbjct: 367 GRKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAV 426

Query: 305 ------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                       DL+     PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++
Sbjct: 427 VTSSLLESVESGDLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKML 486

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
               + L FTE+++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T +
Sbjct: 487 SMNNVKLHFTENALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDM 541

Query: 414 IDAEYVRL 421
           +DA  V  
Sbjct: 542 VDAVLVDE 549



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 22/146 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +                  +   
Sbjct: 189 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 248

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+ GYVG +VE I+  L+ V
Sbjct: 249 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILHKLLMV 308

Query: 110 AINIVRESRRDEVR----EQASINAE 131
           A   V  +++  V     ++ +  AE
Sbjct: 309 AEFNVEAAQQGIVYIDEVDKITKKAE 334


>gi|315653481|ref|ZP_07906402.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
 gi|315489172|gb|EFU78813.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
          Length = 433

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 58/309 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +DT    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 110 SDTELQKSNIALIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAG-YVGEDVENILLK 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       I   +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 169 LIQNADYDINRAQ-RGIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVP 227

Query: 287 ----------KYGSINTDHILFIASGAFHVSR---------------------------- 308
                     +   I+T +ILFI  GAF   +                            
Sbjct: 228 PQGGRKHPQAEMIKIDTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQ 287

Query: 309 ---------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                       L+PE  GR P+   L  L + D   ILT+ ++ L+ QYK+L+  +G+ 
Sbjct: 288 KHLTTDDLVKYGLIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVE 347

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEY 418
           L+F+ D+++A+A +A+N N     +GAR L+++ME  + DI +          V++    
Sbjct: 348 LEFSADALNAIATMALNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402

Query: 419 VRLHIGDFP 427
           +        
Sbjct: 403 ITKASDPII 411



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 18/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
            P EI   LD Y++GQ  AK+ +++A+ N ++R       A    EL   NI L+GPTG 
Sbjct: 68  KPIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGS 127

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     
Sbjct: 128 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDINRAQRGIIYI 187

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + +  +    I   + G+    +  ++    +            +      D +N 
Sbjct: 188 DEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKIDTTNI 247

Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
               G +   +   +++   K       K   ++  + +         + +  D + +  
Sbjct: 248 LFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENW--------QKHLTTDDLVKYG 299

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       +  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 300 LIPEFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEF 350


>gi|332298210|ref|YP_004440132.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           brennaborense DSM 12168]
 gi|332181313|gb|AEE17001.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema
           brennaborense DSM 12168]
          Length = 415

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 64/311 (20%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD- 225
           +E  D   + SN  + G    G   L++  ++ +          ++ +        E+  
Sbjct: 99  VENDDVRIEKSNILLIGPTGSGKTLLAKTLAQKLKVPFAIADATTLTEAGYVGEDVENVL 158

Query: 226 -RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS 282
            +LI+    +  + +     GI+F+DE DKI  +     I   VS EGVQ+ LL ++EG+
Sbjct: 159 LKLINAADGNVAAAER----GIIFIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGT 214

Query: 283 --SVSTKYG---------SINTDHILFIASGAF--------------------------- 304
             SV  + G          I+T +ILFI  GAF                           
Sbjct: 215 RASVPPQGGRKHPNQEMIDIDTTNILFICGGAFVGLDNIIETRVADHTMGFGTTFNALNE 274

Query: 305 -------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                  +   P DL     +PEI GR P+ V LK L K D +LILT+ ++ +I Q++  
Sbjct: 275 EDQAELLNKVIPDDLVKFGLIPEIIGRMPISVALKELTKDDLKLILTEPKNAIIKQFRAS 334

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
              +   L+FT+++I+A+A+ A+   +     GAR L++++E++L ++ F    ++  K 
Sbjct: 335 FAIDNTELEFTDEAIEAIAETAIKRKT-----GARGLRSIVEKMLMNVMFEVPSIEGNKK 389

Query: 412 VVIDAEYVRLH 422
           +VI  + V   
Sbjct: 390 LVITEDIVTGK 400



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILL 58
           ++LT   +P+E    LD+Y+IGQ  AK+A+A+A+ N ++R  LP   +    +   NILL
Sbjct: 54  IELTDVPTPKEFKEYLDQYVIGQDYAKKALAVAVYNHYKRMSLPKVENDDVRIEKSNILL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE ++  L++ A   V  + 
Sbjct: 114 IGPTGSGKTLLAKTLAQKLKVPFAIADATTLTEAGYVGEDVENVLLKLINAADGNVAAAE 173

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++                       
Sbjct: 174 RGIIFIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPNQEMID 233

Query: 174 SDISNF-DIPGGASVGILNLSE 194
            D +N   I GGA VG+ N+ E
Sbjct: 234 IDTTNILFICGGAFVGLDNIIE 255


>gi|227889795|ref|ZP_04007600.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849659|gb|EEJ59745.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii
           ATCC 33200]
          Length = 421

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+   T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSTGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       I+  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDIERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDVDDWQKNLTTGDLVKFGLIPEFIGRIPIIATLDKLSTEDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FT+ ++ A+AD+A++ +     +GAR L++++E  L ++ +   
Sbjct: 329 VKQYKKLLSLDDVDLEFTDGALQAIADMAISRH-----MGARGLRSIVENSLMNVMYRTP 383

Query: 406 -DLQEKTVVIDAEYVRLH 422
            D   + V I  + +  H
Sbjct: 384 SDDNIQEVQITKDVITKH 401



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+   D    +   +  + +    L+    V  ++
Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEF 345


>gi|222619642|gb|EEE55774.1| hypothetical protein OsJ_04339 [Oryza sativa Japonica Group]
          Length = 572

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 71/319 (22%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D + +IE+     D SN  + G    G   L++  ++++          S+ +     + 
Sbjct: 60  DDQNNIEI-----DKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQA--GYVG 112

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLV 279
           ++ + ++    V  +        GIV++DE DKI  +         VS EGVQ+ LL ++
Sbjct: 113 EDVESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKIL 172

Query: 280 EGSSVST-----------KYGSINTDHILFIASGAF------------------------ 304
           EG+ VS            +   I+T  ILFI  GAF                        
Sbjct: 173 EGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRI 232

Query: 305 -----HVSRPA-----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                 V+ P                   L+PE  GR P+ V L +LN+     +LT+ +
Sbjct: 233 NMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPK 292

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L  QY+++     + L FT+ ++  +A  A+  N+     GAR L+ ++E +L +  +
Sbjct: 293 NSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNT-----GARGLRAILESLLLEAMY 347

Query: 403 SASDLQEKTVVIDAEYVRL 421
              D +  +  +DA  V  
Sbjct: 348 EIPDEKTGSERVDAVVVDE 366



 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 31/151 (20%)

Query: 12  IVSELDRYIIGQQDAKRAV---------AIALRNRWRRQQL------------------P 44
           +   LD ++IGQ  AK+ +         ++A+ N ++R                      
Sbjct: 1   MCRRLDEFVIGQGKAKKVLEGACQNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASD 60

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
                E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE I++
Sbjct: 61  DQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQ 120

Query: 105 DLVDVAINIVRESRRDEVR----EQASINAE 131
            L+  A   V+ +++  V     ++ +  AE
Sbjct: 121 KLLVAAEYNVQAAQQGIVYIDEVDKITKKAE 151


>gi|116629801|ref|YP_814973.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|311110558|ref|ZP_07711955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri MV-22]
 gi|122273261|sp|Q042T7|CLPX_LACGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|116095383|gb|ABJ60535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           gasseri ATCC 33323]
 gi|311065712|gb|EFQ46052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri MV-22]
          Length = 421

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+ + T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDLERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIITTLDKLSTKDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FTE ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 329 VKQYKKLLSLDNVDLEFTEGALKAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 DLQ-EKTVVIDAEYVRLH 422
                + V I  + +  H
Sbjct: 384 SEDNIEKVEITKDVITKH 401



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+  +D    +   +  + +    L+   +V  ++
Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEF 345


>gi|89889549|ref|ZP_01201060.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Flavobacteria bacterium BBFL7]
 gi|89517822|gb|EAS20478.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Flavobacteria bacterium BBFL7]
          Length = 413

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 135/347 (38%), Gaps = 67/347 (19%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +E I+     K   S       K+L   +  D   DIE+  +     N  + G    G  
Sbjct: 71  DEYIIGQEFTKKVMSVAVYNHYKRLLQVDNDD---DIEIQKS-----NILMVGQTGTGKT 122

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            +++  ++++           + +    +  D    L  +      +++  +  GIVF+D
Sbjct: 123 LIAKTIARMLNVPLAIVDATVLTEAG-YVGEDVESILTRLLQAADYNLEKAQT-GIVFID 180

Query: 251 EFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHIL 297
           E DKI  +     I   VS EGVQ+ LL L+EG+ V+            K+  +NT++IL
Sbjct: 181 EIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENIL 240

Query: 298 FIASGAFH---------------------------------------VSRPADLLPEIQG 318
           FIA GAF                                          +   ++PEI G
Sbjct: 241 FIAGGAFDGIEKVIRKRLNMQAVGFSASMSNDDVKDQDNILKYIIPKDVKDFGMIPEIIG 300

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV  H+  L+    R ILT+ ++ +I QY +L   + I    T+ ++D + + A+   
Sbjct: 301 RLPVLTHMNPLDAGTLRAILTEPKNAIIKQYTKLFGMDDITFTITDGALDYIVEKAIEYK 360

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
                +GAR L+++ E +  D  F      +K   +   Y    +  
Sbjct: 361 -----LGARGLRSLCEAIFTDAMFDLPSSDDKEFKVTKTYAESKLNK 402



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 9/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P++I + LD YIIGQ+  K+ +++A+ N ++R  Q+  D   E+   NIL+VG TG GK
Sbjct: 62  KPQDIKAFLDEYIIGQEFTKKVMSVAVYNHYKRLLQVDNDDDIEIQKSNILMVGQTGTGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T I++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++   V    
Sbjct: 122 TLIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQTGIV---- 177

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++ G +   E  + V                 
Sbjct: 178 ---FIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTV-VNVPPKGGRKHPDQKFIE 233

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           V   N+  +         K   +    +         +D + D D + +
Sbjct: 234 VNTENILFIAGGAFDGIEKVIRKRLNMQAVGFSASMSNDDVKDQDNILK 282


>gi|282851695|ref|ZP_06261060.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 224-1]
 gi|282557663|gb|EFB63260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 224-1]
          Length = 357

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+ + T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 27  NHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 86

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 87  -YVGEDVENILLKLLQNADYDLERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 144

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 145 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 204

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 205 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIITTLDKLSTKDLIRILTEPKNAL 264

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FTE ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 265 VKQYKKLLSLDNVDLEFTEGALKAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 319

Query: 406 DLQ-EKTVVIDAEYVRLH 422
                + V I  + +  H
Sbjct: 320 SEDNIEKVEITKDVITKH 337



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 14/286 (4%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTA 68
           EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG GKT 
Sbjct: 2   EIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTY 61

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR----E 124
           +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +     +
Sbjct: 62  LAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEID 121

Query: 125 QASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIP 182
           + S  AE   I   + G+    +  ++    +            +      D +N   I 
Sbjct: 122 KISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIV 181

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
           GGA  GI N+      V     KK I    +    ++  D+  + +    + +  +    
Sbjct: 182 GGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLIPEF 235

Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
              I  +   DK+  +D    +   +  + +    L+   +V  ++
Sbjct: 236 IGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEF 281


>gi|49483917|ref|YP_041141.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425790|ref|ZP_05602214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428456|ref|ZP_05604854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431090|ref|ZP_05607467.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433773|ref|ZP_05610131.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436689|ref|ZP_05612733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M876]
 gi|258424091|ref|ZP_05686973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9635]
 gi|282904246|ref|ZP_06312134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906071|ref|ZP_06313926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908986|ref|ZP_06316804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911302|ref|ZP_06319104.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914471|ref|ZP_06322257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919440|ref|ZP_06327175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924817|ref|ZP_06332483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770739|ref|ZP_06343631.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958426|ref|ZP_06375877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503549|ref|ZP_06667396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510564|ref|ZP_06669269.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537106|ref|ZP_06671786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428246|ref|ZP_06820875.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590791|ref|ZP_06949429.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56748680|sp|Q6GG31|CLPX_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49242046|emb|CAG40745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271484|gb|EEV03630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275297|gb|EEV06784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278038|gb|EEV08686.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281866|gb|EEV12003.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284040|gb|EEV14163.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M876]
 gi|257845712|gb|EEV69744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9635]
 gi|282313183|gb|EFB43579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317250|gb|EFB47624.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321652|gb|EFB51977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324997|gb|EFB55307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327250|gb|EFB57545.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331363|gb|EFB60877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595864|gb|EFC00828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus C160]
 gi|283460886|gb|EFC07976.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470942|emb|CAQ50153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790575|gb|EFC29392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919951|gb|EFD97019.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095215|gb|EFE25480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466455|gb|EFF08976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127646|gb|EFG57283.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575677|gb|EFH94393.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694945|gb|ADI98167.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|312437867|gb|ADQ76938.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195577|gb|EFU25964.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|323440781|gb|EGA98490.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus O11]
 gi|323442936|gb|EGB00559.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus O46]
          Length = 420

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  ITELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|15924664|ref|NP_372198.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927253|ref|NP_374786.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus N315]
 gi|57650546|ref|YP_186559.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161950|ref|YP_494316.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195479|ref|YP_500283.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148268155|ref|YP_001247098.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394222|ref|YP_001316897.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221780|ref|YP_001332602.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979992|ref|YP_001442251.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161509893|ref|YP_001575552.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142575|ref|ZP_03567068.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253317182|ref|ZP_04840395.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732326|ref|ZP_04866491.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253734541|ref|ZP_04868706.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006459|ref|ZP_05145060.2| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794060|ref|ZP_05643039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9781]
 gi|258415764|ref|ZP_05682035.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus A9763]
 gi|258421999|ref|ZP_05684919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9719]
 gi|258438243|ref|ZP_05689527.1| protease ClpX [Staphylococcus aureus A9299]
 gi|258443701|ref|ZP_05692040.1| protease ClpX [Staphylococcus aureus A8115]
 gi|258444939|ref|ZP_05693259.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           A6300]
 gi|258447993|ref|ZP_05696125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A6224]
 gi|258454299|ref|ZP_05702268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5937]
 gi|262048649|ref|ZP_06021532.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|269203293|ref|YP_003282562.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282893170|ref|ZP_06301404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A8117]
 gi|282920215|ref|ZP_06327940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9765]
 gi|282929348|ref|ZP_06336915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A10102]
 gi|284024723|ref|ZP_06379121.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848696|ref|ZP_06789442.1| ATP-dependent Clp protease [Staphylococcus aureus A9754]
 gi|295405985|ref|ZP_06815793.1| ATP-dependent Clp protease [Staphylococcus aureus A8819]
 gi|296274898|ref|ZP_06857405.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297207612|ref|ZP_06924047.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245089|ref|ZP_06928966.1| ATP-dependent Clp protease [Staphylococcus aureus A8796]
 gi|304380734|ref|ZP_07363403.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|54036856|sp|P63790|CLPX_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|54040894|sp|P63789|CLPX_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|71153012|sp|Q5HF98|CLPX_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122539337|sp|Q2FXQ7|CLPX_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123485475|sp|Q2FG62|CLPX_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215209|sp|A7X396|CLPX_STAA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172048936|sp|A6QHK8|CLPX_STAAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044154|sp|A6U2E2|CLPX_STAA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044155|sp|A5ITJ9|CLPX_STAA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044156|sp|A8Z2J5|CLPX_STAAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|13701471|dbj|BAB42765.1| protease ClpX [Staphylococcus aureus subsp. aureus N315]
 gi|14247446|dbj|BAB57836.1| protease [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284732|gb|AAW36826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127924|gb|ABD22438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203037|gb|ABD30847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741224|gb|ABQ49522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946674|gb|ABR52610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374580|dbj|BAF67840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722127|dbj|BAF78544.1| protease [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368702|gb|ABX29673.1| S14 family endopeptidase ClpX [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723926|gb|EES92655.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253727482|gb|EES96211.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257788032|gb|EEV26372.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9781]
 gi|257839357|gb|EEV63830.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus A9763]
 gi|257842043|gb|EEV66472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9719]
 gi|257848287|gb|EEV72278.1| protease ClpX [Staphylococcus aureus A9299]
 gi|257851107|gb|EEV75050.1| protease ClpX [Staphylococcus aureus A8115]
 gi|257856147|gb|EEV79062.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           A6300]
 gi|257858754|gb|EEV81625.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A6224]
 gi|257863529|gb|EEV86288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5937]
 gi|259163296|gb|EEW47855.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           D30]
 gi|262075583|gb|ACY11556.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941155|emb|CBI49542.1| ATP-dependent Clp protease ATP-binding subunitClpX [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282589080|gb|EFB94181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A10102]
 gi|282594563|gb|EFB99548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A9765]
 gi|282764488|gb|EFC04614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A8117]
 gi|285817358|gb|ADC37845.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus 04-02981]
 gi|294824722|gb|EFG41145.1| ATP-dependent Clp protease [Staphylococcus aureus A9754]
 gi|294968982|gb|EFG45003.1| ATP-dependent Clp protease [Staphylococcus aureus A8819]
 gi|296887629|gb|EFH26527.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297178169|gb|EFH37417.1| ATP-dependent Clp protease [Staphylococcus aureus A8796]
 gi|302751501|gb|ADL65678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340733|gb|EFM06664.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312830053|emb|CBX34895.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315198631|gb|EFU28959.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140447|gb|EFW32301.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143985|gb|EFW35754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314348|gb|AEB88761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727550|gb|EGG64006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728356|gb|EGG64793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 420

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  MTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|329733101|gb|EGG69438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 420

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGSKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q      D  EL   NI L+G
Sbjct: 58  MTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|326800323|ref|YP_004318142.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
 gi|326551087|gb|ADZ79472.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21]
          Length = 414

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 84/338 (24%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + ++   EI+IE        SN  + G    G   L++  +KV+         +    C 
Sbjct: 97  NQKVEKDEIEIEK-------SNIIMVGETGTGKTLLAKTIAKVLN--------VPFCICD 141

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSR 268
             ++ +      D++++    +Q  +        GI+++DE DKI  +     I   VS 
Sbjct: 142 ATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIIYIDEIDKIARKSDNPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL ++EG+ V+            K  ++NT +ILFI  GA              
Sbjct: 202 EGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAVNTSNILFICGGAFDGIQKKIANRMRT 261

Query: 304 ------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                       +   L+PE+ GR PV  +L  L++     ILT
Sbjct: 262 QTVGYKMNSEHAEIDLNNLYKYITPQDLKAFGLIPELIGRLPVITYLNPLDREALLNILT 321

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + ++ L+ QYK+L   E I L F  +  + + D A         +GAR L+ + E ++ D
Sbjct: 322 EPKNALVKQYKKLFDYEHIDLQFDTEVFEFIVDKANEFK-----LGARGLRAICEAIMLD 376

Query: 400 ISFSASDLQ---EKTVVIDAEYVRLHIGDFPSETDMYH 434
             F     +      + I+ +Y +        ++D+  
Sbjct: 377 AMFEIPSREKDDGGELYINLDYAKQKF----EKSDLKK 410



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 6/191 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI S LD+Y+IGQ DAK+ +++A+ N ++R     +  + E+   NI++VG TG G
Sbjct: 62  LKPAEIKSHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVEKDEIEIEKSNIIMVGETGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 122 KTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDVASAERGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    + +          +    + + SN  
Sbjct: 182 EIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAVNTSNIL 241

Query: 181 IPGGASVGILN 191
              G +   + 
Sbjct: 242 FICGGAFDGIQ 252


>gi|291276286|ref|YP_003516058.1| ATP-dependent clp protease ATP-binding subunit ClpX [Helicobacter
           mustelae 12198]
 gi|290963480|emb|CBG39310.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter
           mustelae 12198]
          Length = 425

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 122/308 (39%), Gaps = 63/308 (20%)

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
           E D+E+A +     N    G    G   +++  +K +          S+ +    +  D 
Sbjct: 110 EDDVEIAKS-----NILFIGPTGSGKTLMAQTIAKALNVPIAICDATSLTEAG-YVGEDV 163

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEG 281
            + L  +       +   +  GIVF+DE DKI        I   VS EGVQ+ LL ++EG
Sbjct: 164 ENILTRLLQAADGDVARAQ-RGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEG 222

Query: 282 SSVSTK-----------YGSINTDHILFIASGAF-------------------------- 304
           S V+             +  ++T  ILF+  GAF                          
Sbjct: 223 SVVNIPPKGGRKHPNQDFIQMDTSDILFVCGGAFDGLSEIIKRRLGKNVLGFGTEKKEKQ 282

Query: 305 -------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                        DL+     PE  GR  V   L+ + K     I+T  ++ +I QYK+L
Sbjct: 283 LDEENILQFVETDDLIAYGMIPEFIGRLHVIATLEMITKEAMMSIMTKPKNAIIKQYKKL 342

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
              + + L F E +++ +AD+A+        IGAR L+ ++E +  D+ F    L+   V
Sbjct: 343 FALDDVGLVFEEAALEKIADLAIIRK-----IGARGLRAIVEEICTDVMFDLPSLKGYDV 397

Query: 413 VIDAEYVR 420
           +I  E V 
Sbjct: 398 IITQEAVE 405



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 13/233 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNILLVGPTG 63
           F+P+E+  +LD Y+IGQ+ AK+  ++A+ N ++R    Q  A+   E+   NIL +GPTG
Sbjct: 68  FTPKELKQKLDDYVIGQERAKKVFSVAIYNHYKRILSRQHAAEDDVEIAKSNILFIGPTG 127

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV- 122
            GKT +++ +A+    P    + T  TE GYVG +VE I+  L+  A   V  ++R  V 
Sbjct: 128 SGKTLMAQTIAKALNVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVARAQRGIVF 187

Query: 123 ---REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
               ++ S  +E R I   + G+       ++    + +                 D S+
Sbjct: 188 IDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQMDTSD 247

Query: 179 F-DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              + GGA  G+  + +  L   V+G G +KK +   ++    L   E+D LI
Sbjct: 248 ILFVCGGAFDGLSEIIKRRLGKNVLGFGTEKKEKQLDEE--NILQFVETDDLI 298


>gi|238853432|ref|ZP_04643811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 202-4]
 gi|238834004|gb|EEQ26262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           gasseri 202-4]
          Length = 421

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 59/318 (18%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           +      ++DI+ + T    SN  + G    G   L++  +K++          ++ +  
Sbjct: 91  NHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAG 150

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRD 274
             +  D  + L+ +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ 
Sbjct: 151 -YVGEDVENILLKLLQNADYDLERAQ-RGIIYIDEIDKISKKAENVSITRDVSGEGVQQS 208

Query: 275 LLPLVEGS--SVSTKYG---------SINTDHILFIASGAF----HVSR----------- 308
           LL ++EG+  SV  + G          I+T +ILFI  GAF    ++ +           
Sbjct: 209 LLKILEGTIASVPPQGGRKHPQQQMIKIDTTNILFIVGGAFDGIENIVKNRLGKKTIGFG 268

Query: 309 -----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                                     L+PE  GR P+   L  L+  D   ILT+ ++ L
Sbjct: 269 AENGLNQVDADDWQKNLTTGDLVKFGLIPEFIGRIPIITTLDKLSTKDLIRILTEPKNAL 328

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QYK+L+  + + L+FTE ++ A+AD+A++ +     +GAR L++++E  L D+ +   
Sbjct: 329 VKQYKKLLSLDNVDLEFTEGALKAIADMAISRH-----MGARGLRSIVENSLMDVMYRTP 383

Query: 406 DLQ-EKTVVIDAEYVRLH 422
                + V I  + +  H
Sbjct: 384 SEDNIEKVEITKDVITKH 401



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 14/289 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI  +LD Y+IGQ  AK+ +++A+ N ++R           EL   NI L+GPTG G
Sbjct: 63  KPMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR-- 123
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +   
Sbjct: 123 KTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYID 182

Query: 124 --EQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
             ++ S  AE   I   + G+    +  ++    +            +      D +N  
Sbjct: 183 EIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKIDTTNIL 242

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA  GI N+      V     KK I    +    ++  D+  + +    + +  + 
Sbjct: 243 FIVGGAFDGIENI------VKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                 I  +   DK+  +D    +   +  + +    L+   +V  ++
Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEF 345


>gi|228475207|ref|ZP_04059933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis SK119]
 gi|228270818|gb|EEK12220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis SK119]
          Length = 420

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 138/320 (43%), Gaps = 63/320 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++   E D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPNEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQELIQIDTTNILFILGGAFDGIDEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+    + ILT  ++ L
Sbjct: 268 ASNEADKYDEEALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY +++  + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI +   
Sbjct: 328 VKQYTKMLALDNVELEFTEEALAAVSEKAIERKT-----GARGLRSIIEESLIDIMYDVP 382

Query: 406 DLQEK-TVVIDAEYVRLHIG 424
              +   VV+ A+ +   I 
Sbjct: 383 STSDVAKVVVTAQTINEEIE 402



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           + T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+
Sbjct: 57  EFTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++                        
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 237 DTTNILFILGGAFDGID 253


>gi|61211758|sp|Q607D1|CLPX3_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 3
          Length = 435

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 136/329 (41%), Gaps = 64/329 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR        +     +     SN  + G    G   L+   ++++G         
Sbjct: 92  HYKRLRHESREILGLAGSDTEVQVGKSNILMIGPTGTGKTLLASTLARIVGVPFVVADAT 151

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSR 268
           ++ +    +  D  + L+ +      S++  E +GIV++DE DK+        N   +S 
Sbjct: 152 TLTQAG-YVGDDVENILVRLLEAADGSVERAE-WGIVYIDEVDKLAKSPEMAINTRDISG 209

Query: 269 EGVQRDLLPLVEGSSVST-------------KYGSINTDHILFIASGAF-----HVSR-- 308
           EGVQ+ LL  VEGS V               +  +I+T +ILFIA GAF     HV +  
Sbjct: 210 EGVQQALLRFVEGSQVKVAARGRRREGSGGGEEVTIDTRNILFIAGGAFPGLERHVEKRI 269

Query: 309 -----------------------------PADL-----LPEIQGRFPVRVHLKSLNKSDF 334
                                        P DL     +PE  GRFPV   L+ L+++ F
Sbjct: 270 GPPRGEIGFHAPVQDAKRPLLEELLAEIQPEDLRRFGLIPEFIGRFPVIAPLEPLDEAAF 329

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+    L+ QY++L   EG+ L FTE +I  +A   +       D GAR L++++E
Sbjct: 330 VRILTEPRDALVRQYQKLFAYEGVELVFTEPAIRRIAARTIER-----DTGARGLRSIIE 384

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            +L    F      + +  V+DA+ V   
Sbjct: 385 HILRRPMFEIPSQSDVRQCVVDADTVDGK 413



 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 19/232 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILL 58
            P +I   LD+Y+IGQ+ AK  +++A+ N ++R +           +D   ++   NIL+
Sbjct: 63  KPEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILM 122

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++  LAR+ G PF+  + T  T+ GYVG +VE I+  L++ A   V  + 
Sbjct: 123 IGPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAADGSVERAE 182

Query: 119 -----RDEVREQA---SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                 DEV + A    +    R +     + A     E  + K+       +       
Sbjct: 183 WGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGEE 242

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            T    +   I GGA  G+    E   ++     +      VQ     L+ +
Sbjct: 243 VTIDTRNILFIAGGAFPGLERHVE--KRIGPPRGEIGFHAPVQDAKRPLLEE 292


>gi|284044103|ref|YP_003394443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Conexibacter
           woesei DSM 14684]
 gi|283948324|gb|ADB51068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Conexibacter
           woesei DSM 14684]
          Length = 428

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 142/327 (43%), Gaps = 67/327 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+++  +  D +I+++        SN  + G    G   L++  +K++          
Sbjct: 92  HYKRVQMMQSEDDDIELQK-------SNILLLGPTGCGKTLLAQTLAKILNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       ++  E  GI+++DE DKI  +     I   VS 
Sbjct: 145 ALTEAG-YVGEDVENILLKLIQAADYDVKKAET-GIIYIDEVDKIARKADNPSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG++ S            ++ +I+T +ILF+  GAF             
Sbjct: 203 EGVQQALLKILEGTTASVPPQGGRKHPHQEFLTIDTTNILFVCGGAFANLDKVIERRVGH 262

Query: 305 ---------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                    P DL     +PE  GR PV   +  L++++   IL
Sbjct: 263 QGVGFGATLQDKAARDLGNTFEECLPEDLVHYGLIPEFIGRLPVMSAVHQLSRNELMTIL 322

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L+ Q++   + +GI L F ++++ ++AD A+   +     GAR L++++E VL 
Sbjct: 323 TEPRNALVKQFQRFFQFDGIELVFADEALQSVADKALERET-----GARGLRSIIEEVLL 377

Query: 399 DISFSASDLQE-KTVVIDAEYVRLHIG 424
           ++ F     ++ K  V+  E +   + 
Sbjct: 378 EVQFELPSRRDVKKCVVTKETIEKGLS 404



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 26/260 (10%)

Query: 4   TFNF----SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57
           TF+      PR+I   L+ Y++GQ+ AKR +++A+ N ++R Q+     D  EL   NIL
Sbjct: 55  TFDLANLPKPRQIYDVLNEYVVGQEAAKRTLSVAVYNHYKRVQMMQSEDDDIELQKSNIL 114

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V+++
Sbjct: 115 LLGPTGCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKA 174

Query: 118 R-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                  DEV + A       I   + G+       ++                      
Sbjct: 175 ETGIIYIDEVDKIARKADNPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFL 234

Query: 173 SSDISNFDIPGGASVGILN---------LSELFSKVMGSGRKKKIRMSVQKCYPE----- 218
           + D +N     G +   L+             F   +     + +  + ++C PE     
Sbjct: 235 TIDTTNILFVCGGAFANLDKVIERRVGHQGVGFGATLQDKAARDLGNTFEECLPEDLVHY 294

Query: 219 -LMRDESDRLIDMDTVHRDS 237
            L+ +   RL  M  VH+ S
Sbjct: 295 GLIPEFIGRLPVMSAVHQLS 314


>gi|77919286|ref|YP_357101.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter
           carbinolicus DSM 2380]
 gi|123574093|sp|Q3A3X6|CLPX_PELCD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|77545369|gb|ABA88931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter
           carbinolicus DSM 2380]
          Length = 416

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 65/328 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  E+     DIE+  +     N  + G    G   L++  +K++          ++
Sbjct: 93  NHYKRVEMVQDGDDIEIQKS-----NILMLGPTGSGKTLLAQTLAKLLNVPFAIADATNL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +       ++  +  GI+++DE DKI  +     I   VS EG
Sbjct: 148 TEAG-YVGEDVENIILSLLQAADYDLEKAQ-RGIIYIDEVDKIARKSDSPSITRDVSGEG 205

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL ++EG++ S            ++  ++T +ILFI  GAF               
Sbjct: 206 VQQALLKIIEGTTASVPPKGGRKHPQQEFLKVDTTNILFICGGAFSGLESVIKQRSGTKA 265

Query: 306 --------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                + P DL+     PE  GR PV   L+ L++     IL +
Sbjct: 266 LGFGAEIKEKKEEGVGEILARTEPMDLIRFGLIPEFVGRLPVVATLEELDEESLVRILKE 325

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ L+ QY++L + E + L FT+ ++ A+A  A+   +     GAR L++++E  + D+
Sbjct: 326 PKNALVKQYQKLFEMEKVHLKFTDGALVAVAAEALKRKT-----GARGLRSIIENAMLDV 380

Query: 401 SFSASDLQ-EKTVVIDAEYVRLHIGDFP 427
            +        K VVI+ + +R       
Sbjct: 381 MYDIPSQDRVKEVVINEDVIRQQGKPII 408



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 8/228 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD Y+IGQ+ AK+ +++A+ N ++R ++  D  D E+   NIL++GPTG GKT
Sbjct: 66  PSEIKDALDEYVIGQEKAKKILSVAVYNHYKRVEMVQDGDDIEIQKSNILMLGPTGSGKT 125

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LA+L   PF   + T  TE GYVG +VE II  L+  A   + +++R     DEV
Sbjct: 126 LLAQTLAKLLNVPFAIADATNLTEAGYVGEDVENIILSLLQAADYDLEKAQRGIIYIDEV 185

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++                 +      D +N   I
Sbjct: 186 DKIARKSDSPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQEFLKVDTTNILFI 245

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLI 228
            GGA  G+ ++ +  S     G   +I+   ++     L R E   LI
Sbjct: 246 CGGAFSGLESVIKQRSGTKALGFGAEIKEKKEEGVGEILARTEPMDLI 293


>gi|312885608|ref|ZP_07745244.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Mucilaginibacter paludis DSM 18603]
 gi|311301920|gb|EFQ78953.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 82/336 (24%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + ++   E++IE        SN  + G    G   L++  +KV+         +    C 
Sbjct: 97  NQKVDKDEVEIEK-------SNIIMVGETGTGKTLLAKTIAKVLN--------VPFCICD 141

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSR 268
             ++ +      D++++    +Q  +        GIV++DE DKI  +     I   VS 
Sbjct: 142 ATVLTEAGYVGEDVESILTRLLQAADYDVTTAERGIVYIDEVDKIARKSDNPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGA-------------- 303
           EGVQ+ LL ++EG+ V+            K  ++NT +ILFI  GA              
Sbjct: 202 EGVQQALLKILEGTMVNVPPQGGRKHPDQKMITVNTSNILFICGGAFDGIEKKIANRLRT 261

Query: 304 ------------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                                       +   L+PE+ GR PV  +L  L++     ILT
Sbjct: 262 QTVGYKFKNEDHEVDMKNLYKYITPQDLKAFGLIPELIGRLPVLTYLNPLDREALANILT 321

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +++L+ QYK+L + EGI LDF  +++  + D A+        +GAR L+++ E ++ D
Sbjct: 322 EPKNSLLKQYKKLFEYEGISLDFEPETLSFIVDKAMEFK-----LGARGLRSICEAIMID 376

Query: 400 ISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYH 434
             F     ++ K++V+  +Y          ++D+  
Sbjct: 377 AMFEFPSKKDVKSLVVTLDYALEKFD----KSDLKK 408



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 6/191 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65
             P EI + LD+Y+IGQ DAK+ +++A+ N ++R     D  + E+   NI++VG TG G
Sbjct: 62  LKPFEIKAHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVDKDEVEIEKSNIIMVGETGTG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +A++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 122 KTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAADYDVTTAERGIVYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    + +          +    + + SN  
Sbjct: 182 EVDKIARKSDNPSITRDVSGEGVQQALLKILEGTMVNVPPQGGRKHPDQKMITVNTSNIL 241

Query: 181 IPGGASVGILN 191
              G +   + 
Sbjct: 242 FICGGAFDGIE 252


>gi|58337154|ref|YP_193739.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           acidophilus NCFM]
 gi|227903730|ref|ZP_04021535.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254471|gb|AAV42708.1| ATP-dependent protease [Lactobacillus acidophilus NCFM]
 gi|227868617|gb|EEJ76038.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 420

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAF----------------------HVSR------ 308
            + G          ++T +ILFI  GAF                       V++      
Sbjct: 221 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKSRLGKKTIGFGAENEVNKVDADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +G+
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ ++V +  +
Sbjct: 341 ELKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIESVEVTKD 395

Query: 418 YVRLH 422
            +  H
Sbjct: 396 VITRH 400



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E ++ +D D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKSRLGKKTIGFGAENEVNK-VDADDWTRHLTTADLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+  +D    +   +  + +    L+    V  K+
Sbjct: 294 MIPEFIGRIPIITTLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKF 344


>gi|314936221|ref|ZP_07843568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis subsp. hominis C80]
 gi|313654840|gb|EFS18585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus hominis subsp. hominis C80]
          Length = 420

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 138/320 (43%), Gaps = 63/320 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++   E D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPNEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQELIQIDTTNILFILGGAFDGIDEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+    + ILT  ++ L
Sbjct: 268 ASNEADKYDEEALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY +++  + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI +   
Sbjct: 328 VKQYTKMLALDNVELEFTEEALAAVSEKAIERKT-----GARGLRSIIEESLIDIMYDVP 382

Query: 406 DLQEK-TVVIDAEYVRLHIG 424
              +   VV+ A+ +   I 
Sbjct: 383 STSDVAKVVVTAQTINDEIE 402



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLV 59
           + T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+
Sbjct: 57  EFTELPTPKEIMDHLNDYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALI 116

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ +
Sbjct: 117 GPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEK 176

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++                        
Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236

Query: 175 DISNFDIPGGASVGILN 191
           D +N     G +   ++
Sbjct: 237 DTTNILFILGGAFDGID 253


>gi|91205314|ref|YP_537669.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii
           RML369-C]
 gi|122425788|sp|Q1RJ84|CLPX_RICBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|91068858|gb|ABE04580.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           bellii RML369-C]
          Length = 427

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 136/330 (41%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      ++   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLQAAEFNVAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNN 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKINREILKSLEIEDLTKFGLIPEFIGRLPIVTTLDDLDKEALVTIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ Q+K+  + +   L   + +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQFKKQFELDEAELIVEDSALEAIAEKALAKKT-----GARGLRSIIEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  + V+  I    +
Sbjct: 377 DSMYKVAELKKQRVTITEDVVKGLIEPIIT 406



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++          S    +          ++    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LD+ DK
Sbjct: 302 RLPI-------VTTLDDLDK 314


>gi|282916934|ref|ZP_06324692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus D139]
 gi|282319421|gb|EFB49773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus subsp. aureus D139]
          Length = 420

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 142/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++++ + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLESDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  ITELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|157826919|ref|YP_001495983.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia bellii
           OSU 85-389]
 gi|166215197|sp|A8GVR9|CLPX_RICB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157802223|gb|ABV78946.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU
           85-389]
          Length = 427

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 136/330 (41%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      ++   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLQAAEFNVAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITSRTNN 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKINREILKSLEIEDLTKFGLIPEFIGRLPIVTTLDDLDKEALVTIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ Q+K+  + +   L   + +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQFKKQFELDEAELIVEDSALEAIAEKALAKKT-----GARGLRSIIEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  + V+  I    +
Sbjct: 377 DSMYKVAELKKQRVTITEDVVKGLIEPIIT 406



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNLS-----ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++          S    +          ++    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LD+ DK
Sbjct: 302 RLPI-------VTTLDDLDK 314


>gi|53804066|ref|YP_114267.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
 gi|53757827|gb|AAU92118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus
           capsulatus str. Bath]
          Length = 444

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 157/394 (39%), Gaps = 70/394 (17%)

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR------EQASINAEERILDALVGKTATS 145
            G  G+  E  +R    V  N  R+    E+       E    + ++ ++   + K   S
Sbjct: 36  AGIEGQICEACVRLAEQVVANWGRKRSMAELHGNVPKPEDIKRHLDQYVIGQELAKEILS 95

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
                  K+LR        +     +     SN  + G    G   L+   ++++G    
Sbjct: 96  VAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILMIGPTGTGKTLLASTLARIVGVPFV 155

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NG 263
                ++ +    +  D  + L+ +      S++  E +GIV++DE DK+        N 
Sbjct: 156 VADATTLTQAG-YVGDDVENILVRLLEAADGSVERAE-WGIVYIDEVDKLAKSPEMAINT 213

Query: 264 IGVSREGVQRDLLPLVEGSSVST-------------KYGSINTDHILFIASGAF-----H 305
             +S EGVQ+ LL  VEGS V               +  +I+T +ILFIA GAF     H
Sbjct: 214 RDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGEEVTIDTRNILFIAGGAFPGLERH 273

Query: 306 VSR-------------------------------PADL-----LPEIQGRFPVRVHLKSL 329
           V +                               P DL     +PE  GRFPV   L+ L
Sbjct: 274 VEKRIGPPRGEIGFHAPVQDAKRPLLEELLAEIQPEDLRRFGLIPEFIGRFPVIAPLEPL 333

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
           +++ F  ILT+    L+ QY++L   EG+ L FTE +I  +A   +       D GAR L
Sbjct: 334 DEAAFVRILTEPRDALVRQYQKLFAYEGVELVFTEPAIRRIAARTIER-----DTGARGL 388

Query: 390 QTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           ++++E +L    F      + +  V+DA+ V   
Sbjct: 389 RSIIEHILRRPMFEIPSQSDVRQCVVDADTVDGK 422



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 19/232 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILL 58
            P +I   LD+Y+IGQ+ AK  +++A+ N ++R +           +D   ++   NIL+
Sbjct: 72  KPEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILM 131

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT ++  LAR+ G PF+  + T  T+ GYVG +VE I+  L++ A   V  + 
Sbjct: 132 IGPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAADGSVERAE 191

Query: 119 -----RDEVREQA---SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                 DEV + A    +    R +     + A     E  + K+       +       
Sbjct: 192 WGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGEE 251

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            T    +   I GGA  G+    E   ++     +      VQ     L+ +
Sbjct: 252 VTIDTRNILFIAGGAFPGLERHVE--KRIGPPRGEIGFHAPVQDAKRPLLEE 301


>gi|328955402|ref|YP_004372735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium
           glomerans PW2]
 gi|328455726|gb|AEB06920.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium
           glomerans PW2]
          Length = 470

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 121/297 (40%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+ + T    
Sbjct: 167 SNILLLGPTGTGKTLLAQTLARILEVPFALADATALTEAG-YVGEDVENILLKLITAADG 225

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I   +  GI+++DE DK+  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 226 DIDRAQ-VGIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKILEGTLASVPPAGGRKH 284

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   I+T +ILFI  GAF                                      P
Sbjct: 285 PQQELLHIDTTNILFICGGAFVGLDKIIADRVGNKGIGFNSEIAGPTSIDENDLLRQVLP 344

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
           ADL     +PE  GR PV     +  + D   ILT+  + ++ QY+ + + EG  L F  
Sbjct: 345 ADLNAFGMIPEFVGRTPVITETSAFTEDDLVSILTEPRNAIVKQYRRMFELEGCELVFDP 404

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           D++  +A +A+   +     GAR L+++ E +L+   F      + + V+I    VR
Sbjct: 405 DALHEIARLALVRKT-----GARGLRSICENLLQQTMFDLPSEHDVSQVIITGAAVR 456


>gi|329946416|ref|ZP_08293983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328527392|gb|EGF54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 440

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 63/302 (20%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G  +L+   ++++          ++ +    +  D  + L+ +    
Sbjct: 119 GKSNILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAG-YVGEDVENILLKLIQAA 177

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYG--- 289
              ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ S   G   
Sbjct: 178 DGDVKRAEK-GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGR 236

Query: 290 --------SINTDHILFIASGAF------------------------------------- 304
                    I+T +ILFIA+GAF                                     
Sbjct: 237 KHPHQEFLEIDTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLDGSTSSKDVFT 296

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              RP DL     +PE  GR PV   ++ L   +   ++T+ ++ L+ QY+ L   +G+ 
Sbjct: 297 SPVRPEDLHKFGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVE 356

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           L+ T+ +I+A+A +A+   +     GAR L +++E VL    F    L E   VV+DA+ 
Sbjct: 357 LELTDAAIEAVASLALERKT-----GARGLTSIVEEVLGQSMFEVPSLPEVGRVVVDADA 411

Query: 419 VR 420
           VR
Sbjct: 412 VR 413



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 5/117 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPT 62
            P+EI   L++Y+IGQ+ AKRA+++A+ N ++R Q+      E     L   NILL+GPT
Sbjct: 70  KPQEIFDFLNQYVIGQESAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPT 129

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   V+ + +
Sbjct: 130 GTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 186


>gi|227893377|ref|ZP_04011182.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
 gi|227864792|gb|EEJ72213.1| ATP-dependent protease ATP-binding subunit [Lactobacillus
           ultunensis DSM 16047]
          Length = 432

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 112 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 170

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 171 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 229

Query: 286 TKYG---------SINTDHILFIASGAF----------------------HVSR------ 308
            + G          ++T +ILFI  GAF                       VS+      
Sbjct: 230 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVSKVDADDW 289

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +G+
Sbjct: 290 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLDSKDLVRVLTEPKNALVKQYKKLLSLDGV 349

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ + V +  +
Sbjct: 350 DLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIEAVEVTKD 404

Query: 418 YVRLH 422
            +  H
Sbjct: 405 VITRH 409



 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 72  KPVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 131

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 132 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 188

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 189 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 243

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E  + +D D          + +  
Sbjct: 244 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVSK-VDADDWTRHLTTADLVKFG 302

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ ++D    +   +  + +    L+    V  K+
Sbjct: 303 MIPEFIGRIPIITTLDKLDSKDLVRVLTEPKNALVKQYKKLLSLDGVDLKF 353


>gi|15604535|ref|NP_221053.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia
           prowazekii str. Madrid E]
 gi|6225170|sp|Q9ZCN1|CLPX_RICPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|3861229|emb|CAA15129.1| ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX (clpX)
           [Rickettsia prowazekii]
 gi|292572325|gb|ADE30240.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia
           prowazekii Rp22]
          Length = 425

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 132/322 (40%), Gaps = 66/322 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLISAEFNIAKAQK-GIIYIDEVDKIARKSDNPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDRIIRSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANINIDKEKSNNEILKSLEIEDLTKFGLIPEFIGRLPIITTLDELDKEALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDADLVIDYSALEAIAEKALVKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVR 420
           D  +  ++L+++ V I  E V 
Sbjct: 377 DSMYKVAELKKQRVTITKEVVD 398



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 16/258 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICKILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA +GI  +    +     G    I +  +K       +E  + ++++ + +  + 
Sbjct: 242 FICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEKS-----NNEILKSLEIEDLTKFGLI 296

Query: 240 MVENYG---IVFLDEFDK 254
                    I  LDE DK
Sbjct: 297 PEFIGRLPIITTLDELDK 314


>gi|258451811|ref|ZP_05699833.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5948]
 gi|257860523|gb|EEV83349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Staphylococcus aureus A5948]
          Length = 420

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 63/317 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI++ DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYGDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVRL 421
             +  T VVI A+ +  
Sbjct: 383 SNENVTKVVITAQTINE 399



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  MTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYGDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|157414263|ref|YP_001485129.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9215]
 gi|167009018|sp|A8G7G2|CLPX_PROM2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157388838|gb|ABV51543.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9215]
          Length = 455

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 126/327 (38%), Gaps = 65/327 (19%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R   +  E S      +   T    SN  + G    G   L++  ++ +          +
Sbjct: 114 RLAWKVKEESKNSNSTDSQATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATT 173

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSRE 269
           + +    +  D  + L+ +      ++++ +  GI+++DE DKI  +     I   VS E
Sbjct: 174 LTEAG-YVGEDVENILLRLLQKSEMNVELAQK-GIIYIDEIDKIARKSENPSITRDVSGE 231

Query: 270 GVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSRP 309
           GVQ+ LL ++EG+  +                I+T  ILFI  GAF          + + 
Sbjct: 232 GVQQALLKMLEGTIANVPPQGGRKHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKH 291

Query: 310 A-----------------------------------DLLPEIQGRFPVRVHLKSLNKSDF 334
           +                                    L+PE  GR PV   L  L K   
Sbjct: 292 SIGFTTNSDQNKVDTKKIIDPRDSLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETL 351

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT     L+ Q+K L+  + + L F  DS++A+A+ A    +     GAR L++++E
Sbjct: 352 ESILTQPRDALVKQFKTLLSMDNVELKFEPDSVEAIANEAFKRKT-----GARALRSIIE 406

Query: 395 RVLEDISFSASDLQ-EKTVVIDAEYVR 420
            ++ D+ ++    +  K   I  + V 
Sbjct: 407 ELMLDVMYTLPSEENIKEFTITKKMVD 433



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 123/307 (40%), Gaps = 17/307 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------D 49
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R                    
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEESKNSNSTDSQAT 134

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           +   V  +++     DE+ + A  +    I   + G+       ++    + +       
Sbjct: 195 SEMNVELAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGR 254

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                     D S    I GGA +G+ ++ +        G       +       +   +
Sbjct: 255 KHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIIDPRD 314

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           S + +++D + +  +       I      D++      + +   R+ + +    L+   +
Sbjct: 315 SLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDN 374

Query: 284 VSTKYGS 290
           V  K+  
Sbjct: 375 VELKFEP 381


>gi|288574916|ref|ZP_06393273.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570657|gb|EFC92214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 431

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 141/316 (44%), Gaps = 66/316 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             +++++   ++ E+DI+        SN  + G    G   +++  +K +          
Sbjct: 106 HYRRIQNNIANESEVDIQK-------SNLLLAGPTGSGKTLIAQTLAKKLNVPFAMADAT 158

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
            + +    +  D  + L+ +       +   E  GI+++DE DKI  +     I   VS 
Sbjct: 159 VLTEAG-YVGEDVENILVRLLQAADYDVSAAE-RGIIYIDEMDKITRKSESTSITRDVSG 216

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  +            ++ SI+T +ILFI +GAF             
Sbjct: 217 EGVQQALLKILEGTLANIPPKGGRKHPYQEFISIDTTNILFICAGAFDGLEDIVARRMNR 276

Query: 305 ---------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                  + P DL     +PEI GR PV V +++L+      IL
Sbjct: 277 KMIGFGGEVHSKVSAKRFELLSHAEPDDLMSFGFIPEIIGRIPVLVPMETLDVDALVKIL 336

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+  + L+ QY++L++ E I L+FTE ++ A+A+ A+  N+     GAR L+T+ME  + 
Sbjct: 337 TEPRNALVRQYEKLLELENIDLEFTEGALKAVAEKAMIKNT-----GARGLRTIMEGRML 391

Query: 399 DISFSASDLQEKTVVI 414
           D+ +     ++  V I
Sbjct: 392 DLMYDIPSREDDVVKI 407



 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILL 58
           M       PREI S LDRY+IGQ+ AKRAV++++ N +RR Q     +   ++   N+LL
Sbjct: 70  MDFNNIPKPREIKSYLDRYVIGQEKAKRAVSVSVYNHYRRIQNNIANESEVDIQKSNLLL 129

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
            GPTG GKT I++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  + 
Sbjct: 130 AGPTGSGKTLIAQTLAKKLNVPFAMADATVLTEAGYVGEDVENILVRLLQAADYDVSAAE 189

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ +    +    I   + G+       ++    L +               S
Sbjct: 190 RGIIYIDEMDKITRKSESTSITRDVSGEGVQQALLKILEGTLANIPPKGGRKHPYQEFIS 249

Query: 174 SDISNF-DIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            D +N   I  GA  G+ ++ +   ++ M     +       K +  L   E D L+
Sbjct: 250 IDTTNILFICAGAFDGLEDIVARRMNRKMIGFGGEVHSKVSAKRFELLSHAEPDDLM 306


>gi|212550899|ref|YP_002309216.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549137|dbj|BAG83805.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 410

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 58/300 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++           + +    +  D    L  +  V   
Sbjct: 111 SNILLVGATGTGKTLLAKTIARLLKVPFTIVDATVLTEAG-YVGEDIESLLTRLLQVADF 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK------- 287
           +++  E  GIVF+DE DKI  +     I   VS EGVQ+ LL L+EGS V+         
Sbjct: 170 NLEATEQ-GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSLVNVPPKGGRKH 228

Query: 288 ----YGSINTDHILFIASGA--------------------------------------FH 305
                  +NT +ILFI  GA                                        
Sbjct: 229 PEQDMIQVNTKNILFICGGAFDGIERKIAQRLSMQVVGYTANENTKKIDRNNLLKYIAPQ 288

Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
             +   L+PEI GR P+  +L+ L+    R ILT  +++++ QY +L   +G+ L F ++
Sbjct: 289 DLKAFGLIPEIIGRLPILTYLEPLDCIALRDILTKPKNSIVKQYIKLFAMDGVKLSFDKE 348

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           +++ + D ++        +GAR L+++ E ++ D  F       K + I   Y +  I  
Sbjct: 349 TLNYIVDKSIEFK-----LGARGLRSITENIMIDAMFEIPSTSRKELHITKNYAKERIEK 403



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----DLRDELMPKNILLVGPTG 63
           P++I + LD+Y+I Q  AKR +++A+ N ++R   P      D   E+   NILLVG TG
Sbjct: 61  PKDIKALLDQYVISQDTAKRYLSVAVYNHYKRLLQPRCTDDDDDDVEIEKSNILLVGATG 120

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----- 118
            GKT +++ +ARL   PF  V+ T  TE GYVG ++E ++  L+ VA   +  +      
Sbjct: 121 TGKTLLAKTIARLLKVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADFNLEATEQGIVF 180

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A       I   + G+       ++    L +          E      +  N
Sbjct: 181 IDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSLVNVPPKGGRKHPEQDMIQVNTKN 240

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
                G +   +         M          + +     L++
Sbjct: 241 ILFICGGAFDGIERKIAQRLSMQVVGYTANENTKKIDRNNLLK 283


>gi|256827323|ref|YP_003151282.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Cryptobacterium curtum DSM 15641]
 gi|256583466|gb|ACU94600.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Cryptobacterium curtum DSM 15641]
          Length = 454

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 117/290 (40%), Gaps = 59/290 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++ +          ++ +    +  D  + L+ + T    
Sbjct: 146 SNILLLGPTGSGKTLLAQTLARTLRVPFAIADATTLTEAG-YVGEDVENILLKLITAADF 204

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            +   E  GIV++DE DKI  +     I   VS EGVQ+ LL +VEG   S         
Sbjct: 205 DVPRAEI-GIVYIDEIDKIARKAENLSITRDVSGEGVQQSLLKIVEGCEASVPPQGGRKH 263

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              +   I+T +ILFI  GAF                                      P
Sbjct: 264 PQQELIHIDTTNILFILGGAFVGLTDIIAERVGKSGLGFNARLPQSKKHEDAELLRQVLP 323

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL     +PE  GR PV   LK L + D   ILT+  + L+ QY  + + E   L    
Sbjct: 324 EDLNKFGMIPEFVGRIPVITRLKELTEEDLVRILTEPRNALVKQYTRMFEFEESELVVEP 383

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
           D++ A+A  A+  N+     GAR L+++ E VL D+ +   D  E T V+
Sbjct: 384 DALRAIAHKAIEHNT-----GARGLRSICENVLMDVMYELPDHTEPTRVV 428



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+   L  +++GQ++AKRA+++A+ N ++R  L AD  D   EL   NILL+GPTG 
Sbjct: 97  TPHELYDRLSAFVVGQEEAKRALSVAVYNHYKRISLGADASDDDVELAKSNILLLGPTGS 156

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   V  +       
Sbjct: 157 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLITAADFDVPRAEIGIVYI 216

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A       I   + G+    +  ++                 +      D +N 
Sbjct: 217 DEIDKIARKAENLSITRDVSGEGVQQSLLKIVEGCEASVPPQGGRKHPQQELIHIDTTNI 276

Query: 180 -DIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
             I GGA VG+ + ++E   K       +  +    +    L +   + L
Sbjct: 277 LFILGGAFVGLTDIIAERVGKSGLGFNARLPQSKKHEDAELLRQVLPEDL 326


>gi|293382411|ref|ZP_06628348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis R712]
 gi|293388260|ref|ZP_06632776.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis S613]
 gi|312908362|ref|ZP_07767326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 512]
 gi|312910565|ref|ZP_07769407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 516]
 gi|291080187|gb|EFE17551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis R712]
 gi|291082342|gb|EFE19305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis S613]
 gi|310625776|gb|EFQ09059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 512]
 gi|311289113|gb|EFQ67669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis DAPTO 516]
          Length = 468

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 104 EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 163

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 164 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 217

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 218 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 276

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 277 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGKKTIGFGKTNSALNEEESIMQH 336

Query: 309 --PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+
Sbjct: 337 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLE 396

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 397 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 447



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 17/299 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 108 ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 167

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 168 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 227

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 228 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 287

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
             D +N     G +   +         +   R  K  +   K    L  +ES  + I  +
Sbjct: 288 QIDTTNVLFIVGGAFDGIE-------TIVKNRLGKKTIGFGKTNSALNEEESIMQHIIPE 340

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            + +  +       +  +   DK+   D    +   +  + +    L+       ++  
Sbjct: 341 DLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEP 399


>gi|315174262|gb|EFU18279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1346]
          Length = 468

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 104 EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 163

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 164 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 217

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 218 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 276

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 277 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSTLNEEESIMQH 336

Query: 309 --PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+
Sbjct: 337 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLE 396

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 397 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 447



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 108 ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 167

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 168 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 227

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 228 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 287

Query: 173 SSDISNFDIPGGASVGILN 191
             D +N     G +   + 
Sbjct: 288 QIDTTNVLFIVGGAFDGIE 306


>gi|224367557|ref|YP_002601720.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfobacterium
           autotrophicum HRM2]
 gi|259491255|sp|C0QHJ8|CLPX_DESAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|223690273|gb|ACN13556.1| ClpX1 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 71/327 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L     S+ +++I+        SN  + G    G   L++  ++ +          
Sbjct: 94  HYKRLDAEVKSEDDVEIQK-------SNILLIGPTGCGKTLLAQTLARFLDVPFALADAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GV 266
           ++ +        E+  L    ++ +++   +E    GI+++DE DKI  R     I   V
Sbjct: 147 TLTEAGYVGEDVENIIL----SLVQNADYDIEKAQRGIIYIDEVDKISQRGDNPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL ++EG++ S             +  + T +ILF+  G F           
Sbjct: 203 SGEGVQQALLKIIEGTTASIPPKGGRKHPQQDFVKVETSNILFVCGGTFTGLEKVIERRI 262

Query: 305 -----------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRL 336
                                     +P DL+     PE  GR PV   L  LN++    
Sbjct: 263 SQKSMGFGAEVQSRKEKNVGELLEQLKPEDLIKFGLIPEFLGRLPVVTSLSELNEASLVK 322

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           ILT+ ++ L+ QY+ L + E + L FTE+++ A+A  AV   S     GAR L+ +ME  
Sbjct: 323 ILTEPKNALLKQYQRLFEFENVKLTFTEEALAAMAKEAVTRRS-----GARGLRAIMEET 377

Query: 397 LEDISFSASDLQE-KTVVIDAEYVRLH 422
           + DI +     +  +  ++  E V  H
Sbjct: 378 MLDIMYELPSTENVRECIVGEEVVLKH 404



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 28/242 (11%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63
             +PREI   LD Y+I Q  AK+ +++A+ N ++R        D  E+   NILL+GPTG
Sbjct: 63  KLTPREIKDVLDTYVIEQDRAKKVLSVAVYNHYKRLDAEVKSEDDVEIQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    PF   + T  TE GYVG +VE II  LV  A   + +++R    
Sbjct: 123 CGKTLLAQTLARFLDVPFALADATTLTEAGYVGEDVENIILSLVQNADYDIEKAQRGIIY 182

Query: 120 -DEV-------------REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
            DEV             R+ +    ++ +L  + G TA+           + G    ++ 
Sbjct: 183 IDEVDKISQRGDNPSITRDVSGEGVQQALLKIIEGTTASIPP--------KGGRKHPQQD 234

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            ++V  ++          G    I       S   G+  + +   +V +   +L  ++  
Sbjct: 235 FVKVETSNILFVCGGTFTGLEKVIERRISQKSMGFGAEVQSRKEKNVGELLEQLKPEDLI 294

Query: 226 RL 227
           + 
Sbjct: 295 KF 296


>gi|315130694|gb|EFT86680.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus
           subsp. aureus CGS03]
          Length = 398

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 63/316 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  ++  KE D+E+  +     N  + G    G   L++  +K +          S+ + 
Sbjct: 95  RIQQLGPKEDDVELQKS-----NIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEA 149

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D  + L+ +       I   E  GI+++DE DKI  +     I   VS EGVQ+
Sbjct: 150 G-YVGDDVENILLRLIQAADFDIDKAEK-GIIYVDEIDKIARKSENTSITRDVSGEGVQQ 207

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL ++EG++ S            +   I+T +ILFI  GAF                  
Sbjct: 208 ALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGF 267

Query: 306 ---------------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
                            RP DL     +PE  GR P+  +L++L+ +  + ILT  ++ L
Sbjct: 268 SSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNAL 327

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           + QY ++++ + + L+FTE+++ A+++ A+   +     GAR L++++E  L DI F   
Sbjct: 328 VKQYTKMLELDDVDLEFTEEALSAISEKAIERKT-----GARGLRSIIEESLIDIMFDVP 382

Query: 406 DLQEKT-VVIDAEYVR 420
             +  T VVI A+ + 
Sbjct: 383 SNENVTKVVITAQTIE 398



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVG 60
           +T   +P+EI+  L+ Y+IGQ+ AK+++A+A+ N ++R Q   P +   EL   NI L+G
Sbjct: 58  MTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIG 117

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   + ++ + 
Sbjct: 118 PTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKG 177

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++                        D
Sbjct: 178 IIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQID 237

Query: 176 ISNFDIPGGASVGILN 191
            +N     G +   + 
Sbjct: 238 TTNILFILGGAFDGIE 253


>gi|194333458|ref|YP_002015318.1| ATP-dependent protease ATP-binding subunit ClpX [Prosthecochloris
           aestuarii DSM 271]
 gi|238693326|sp|B4S620|CLPX_PROA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194311276|gb|ACF45671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prosthecochloris aestuarii DSM 271]
          Length = 439

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 133/314 (42%), Gaps = 65/314 (20%)

Query: 151 FRKKLRDGEI-SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
             +++   E   D E D+ +  +     N  + G    G   L++  + ++         
Sbjct: 110 HYRRIESQEWVRDAEDDVVIEKS-----NILLIGPTGTGKTLLAQTLANLLDVPFTIVDA 164

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVS 267
            S+ +    +  D    L  +      +++  E  GI+++DE DKI  + +   I   VS
Sbjct: 165 TSLTEAG-YVGDDVETILTRLLQASDFNLERAE-RGIIYVDEIDKIARKSANVSITRDVS 222

Query: 268 REGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVS 307
            EGVQ+ LL ++EG+ V             +  ++NT +ILFI  GAF          V+
Sbjct: 223 GEGVQQALLKILEGAVVGVPPRGGRKHPEQQLINVNTRNILFICGGAFEGLSKLIGRRVA 282

Query: 308 RPA------------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLI 337
           + +                               L+PE  GR PV   L  L+    R I
Sbjct: 283 KASMGFGSKVKAQQAEADPEILQKVTQDDLHEYGLIPEFIGRLPVISTLDPLDAKALRNI 342

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ L+ QY++L + +G  L F ED++D + ++A++  +     GAR L++V+E ++
Sbjct: 343 LVEPKNALVKQYQKLFEMDGCELVFDEDALDKVVEIALDRGT-----GARALRSVLENIM 397

Query: 398 EDISFSASDLQEKT 411
            DI F    +   T
Sbjct: 398 IDIMFELPSMTGVT 411



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 16/284 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPT 62
           SP+ I+  L +Y++GQ+ A++++A+A+ N +RR +    +RD      +   NILL+GPT
Sbjct: 81  SPKNIMESLGQYVVGQERARKSLAVAVYNHYRRIESQEWVRDAEDDVVIEKSNILLIGPT 140

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA L   PF  V+ T  TE GYVG +VE I+  L+  +   +  + R   
Sbjct: 141 GTGKTLLAQTLANLLDVPFTIVDATSLTEAGYVGDDVETILTRLLQASDFNLERAERGII 200

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +A   I   + G+       ++    +            E    + +  
Sbjct: 201 YVDEIDKIARKSANVSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLINVNTR 260

Query: 178 NF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           N   I GGA  G+  L          G   K++    +  PE+++      +  D +H  
Sbjct: 261 NILFICGGAFEGLSKLIGRRVAKASMGFGSKVKAQQAEADPEILQK-----VTQDDLHEY 315

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            +       +  +   D + A+   N +   +  + +    L E
Sbjct: 316 GLIPEFIGRLPVISTLDPLDAKALRNILVEPKNALVKQYQKLFE 359


>gi|227519263|ref|ZP_03949312.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227555530|ref|ZP_03985577.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|229545496|ref|ZP_04434221.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|229549742|ref|ZP_04438467.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|307268264|ref|ZP_07549648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4248]
 gi|307272885|ref|ZP_07554132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0855]
 gi|307275638|ref|ZP_07556779.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2134]
 gi|307280532|ref|ZP_07561581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0860]
 gi|307287931|ref|ZP_07567964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0109]
 gi|307295961|ref|ZP_07575793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0411]
 gi|312900930|ref|ZP_07760224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0470]
 gi|312902702|ref|ZP_07761906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0635]
 gi|312950951|ref|ZP_07769861.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0102]
 gi|227073275|gb|EEI11238.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX0104]
 gi|227175335|gb|EEI56307.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           HH22]
 gi|229305011|gb|EEN71007.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           ATCC 29200]
 gi|229309412|gb|EEN75399.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           TX1322]
 gi|306496292|gb|EFM65871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0411]
 gi|306501076|gb|EFM70383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0109]
 gi|306504080|gb|EFM73296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0860]
 gi|306507743|gb|EFM76872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2134]
 gi|306510499|gb|EFM79522.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0855]
 gi|306515424|gb|EFM83955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4248]
 gi|310631100|gb|EFQ14383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0102]
 gi|310633756|gb|EFQ17039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0635]
 gi|311292029|gb|EFQ70585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0470]
 gi|315025928|gb|EFT37860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2137]
 gi|315028966|gb|EFT40898.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4000]
 gi|315033240|gb|EFT45172.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0017]
 gi|315036725|gb|EFT48657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0027]
 gi|315143500|gb|EFT87516.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX2141]
 gi|315147583|gb|EFT91599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX4244]
 gi|315149321|gb|EFT93337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0012]
 gi|315152206|gb|EFT96222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0031]
 gi|315157011|gb|EFU01028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0043]
 gi|315159835|gb|EFU03852.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0312]
 gi|315161527|gb|EFU05544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0645]
 gi|315163617|gb|EFU07634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1302]
 gi|315167354|gb|EFU11371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1341]
 gi|315169563|gb|EFU13580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1342]
 gi|315574490|gb|EFU86681.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0309B]
 gi|315576777|gb|EFU88968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0630]
 gi|315581848|gb|EFU94039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX0309A]
          Length = 468

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 104 EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 163

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 164 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 217

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 218 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 276

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 277 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQH 336

Query: 309 --PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DLL     PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+
Sbjct: 337 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLE 396

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 397 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 447



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 108 ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 167

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 168 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 227

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 228 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 287

Query: 173 SSDISNFDIPGGASVGILN 191
             D +N     G +   + 
Sbjct: 288 QIDTTNVLFIVGGAFDGIE 306


>gi|126697185|ref|YP_001092071.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9301]
 gi|166214800|sp|A3PFE5|CLPX_PROM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126544228|gb|ABO18470.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9301]
          Length = 455

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 126/327 (38%), Gaps = 65/327 (19%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R   +  E +      +   T    SN  + G    G   L++  ++ +          +
Sbjct: 114 RLAWKFKEENKNSNSKDSQATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATT 173

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSRE 269
           + +    +  D  + L+ +      ++++ +  GI+++DE DKI  +     I   VS E
Sbjct: 174 LTEAG-YVGEDVENILLRLLQKSEMNVELAQK-GIIYIDEIDKIARKSENPSITRDVSGE 231

Query: 270 GVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF-------------- 304
           GVQ+ LL ++EG+  +                I+T  ILFI  GAF              
Sbjct: 232 GVQQALLKMLEGTIANVPPQGGRKHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKH 291

Query: 305 ----------------HVSRPAD--------------LLPEIQGRFPVRVHLKSLNKSDF 334
                            +  P D              L+PE  GR PV   L  L K   
Sbjct: 292 SIGFTTNSDQNKVDTKKIVDPRDALKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETL 351

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT     L+ Q+K L+  + + L F  DS++A+A+ A    +     GAR L++++E
Sbjct: 352 ESILTQPRDALVKQFKTLLSMDNVELSFEPDSVEAIANEAYKRKT-----GARALRSIIE 406

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVR 420
            ++ DI ++    +  K   I  + V 
Sbjct: 407 ELMLDIMYTLPSEENVKEFTITKKMVD 433



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 123/307 (40%), Gaps = 17/307 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R        ++          
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKFKEENKNSNSKDSQAT 134

Query: 51  -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           +   V  +++     DE+ + A  +    I   + G+       ++    + +       
Sbjct: 195 SEMNVELAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGR 254

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                     D S    I GGA +G+ ++ +        G       +       +   +
Sbjct: 255 KHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRD 314

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + + +++D + +  +       I      D++      + +   R+ + +    L+   +
Sbjct: 315 ALKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDN 374

Query: 284 VSTKYGS 290
           V   +  
Sbjct: 375 VELSFEP 381


>gi|33862213|ref|NP_893774.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|46576449|sp|Q7UZK6|CLPX_PROMP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33634431|emb|CAE20116.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 455

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 135/352 (38%), Gaps = 70/352 (19%)

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
             L         R  +R K  + E        ++  T    SN  + G    G   L++ 
Sbjct: 102 KILSVAVYNHYKRLAWRLKEENKENDSN----DLQATKLQKSNILLIGPTGSGKTLLAQT 157

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255
            ++ +          S+ +    +  D  + L+ +      ++ + +  GI+++DE DKI
Sbjct: 158 LAEFLDVPFAVADATSLTEAG-YVGEDVENILLRLLQKSEMNVDLAQK-GIIYIDEIDKI 215

Query: 256 VARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASG 302
             +     I   VS EGVQ+ LL ++EG+  +                I+T  ILFI  G
Sbjct: 216 ARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNHDCIQIDTSQILFICGG 275

Query: 303 AF---------HVSRPA-----------------------------------DLLPEIQG 318
           AF          + + +                                    L+PE  G
Sbjct: 276 AFIGLEDIVQKRLGKNSIGFTTNPDESKINAKKIIDSRDALKNLEQDDLVKYGLIPEFIG 335

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   L  L+K     ILT+    L+ Q+K L+  + + L+F  +S++A+A+ A    
Sbjct: 336 RIPVCAVLDRLSKETLESILTEPRDALVKQFKTLLSMDNVELNFEPESVEAIANEAFKRK 395

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH-IGDFPS 428
           +     GAR L++++E ++ D+ ++    +E K  +I  + V    +     
Sbjct: 396 T-----GARALRSIIEELMLDLMYTLPSQEEVKEFIITKKMVDKLFLSKIVK 442



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 122/307 (39%), Gaps = 17/307 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50
           ++LT    P EI + LD  ++GQ+ AK+ +++A+ N ++R        ++          
Sbjct: 75  LELTSIPKPLEIKTFLDNQVVGQESAKKILSVAVYNHYKRLAWRLKEENKENDSNDLQAT 134

Query: 51  -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATSLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           +   V  +++     DE+ + A  +    I   + G+       ++    + +       
Sbjct: 195 SEMNVDLAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGR 254

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                     D S    I GGA +G+ ++ +        G       S       +   +
Sbjct: 255 KHPNHDCIQIDTSQILFICGGAFIGLEDIVQKRLGKNSIGFTTNPDESKINAKKIIDSRD 314

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           + + ++ D + +  +       I      D++      + +   R+ + +    L+   +
Sbjct: 315 ALKNLEQDDLVKYGLIPEFIGRIPVCAVLDRLSKETLESILTEPRDALVKQFKTLLSMDN 374

Query: 284 VSTKYGS 290
           V   +  
Sbjct: 375 VELNFEP 381


>gi|282883080|ref|ZP_06291680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           lacrimalis 315-B]
 gi|300813661|ref|ZP_07093983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|281297057|gb|EFA89553.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           lacrimalis 315-B]
 gi|300512203|gb|EFK39381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 409

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 59/308 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           IE +D     SN  + G    G   L++  +K++          ++ +    +  D  + 
Sbjct: 98  IENSDIELQKSNILMIGPTGSGKTLLAQTLAKLLHVPFAICDATTLTEAG-YVGEDVENI 156

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++ +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  
Sbjct: 157 ILKLIQNADYDIERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVA 215

Query: 285 ST-----------KYGSINTDHILFIASGAF-------------------------HVSR 308
           +            ++  ++T +ILFI  GAF                         ++ R
Sbjct: 216 NVPPQGGRKHPNQEFIQVDTTNILFIVGGAFDGLEKIIEQRTMKSSMGFEAAIYDKNIER 275

Query: 309 PA-------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
            A              L+PE+ GR PV + L+ L++     ILT  ++ L+ QYKELMK 
Sbjct: 276 KAILKKVETEDLLKFGLIPELIGRLPVTITLEELDEDALVEILTKPKNALVKQYKELMKL 335

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVI 414
           + + L F +D++  +A  A+   +     GAR L+ V+E  + +I +     ++   V +
Sbjct: 336 DNVDLIFDDDALRDIAKKAIEKKA-----GARGLRGVIENTIMNIMYEVPSREDVVGVEV 390

Query: 415 DAEYVRLH 422
               V   
Sbjct: 391 TKASVEGK 398



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 10/235 (4%)

Query: 4   TFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
            F+   P +I   LD Y++ Q+ AK+A+A+A+ N ++R      + +   EL   NIL++
Sbjct: 54  NFDLPKPAQIKHILDSYVVKQESAKKALAVAVYNHYKRINSNKKIENSDIELQKSNILMI 113

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+L   PF   + T  TE GYVG +VE II  L+  A   +  + +
Sbjct: 114 GPTGSGKTLLAQTLAKLLHVPFAICDATTLTEAGYVGEDVENIILKLIQNADYDIERAEK 173

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +                 
Sbjct: 174 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQV 233

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           D +N   I GGA  G+  + E  +     G +  I     +    L + E++ L+
Sbjct: 234 DTTNILFIVGGAFDGLEKIIEQRTMKSSMGFEAAIYDKNIERKAILKKVETEDLL 288


>gi|308473141|ref|XP_003098796.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
 gi|308268092|gb|EFP12045.1| hypothetical protein CRE_30105 [Caenorhabditis remanei]
          Length = 523

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 172/481 (35%), Gaps = 125/481 (25%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------------- 43
             P+EIV  L++Y++GQ++AK+ +A+A+   +RR +                        
Sbjct: 102 LYPKEIVEHLNKYVVGQEEAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKIF 161

Query: 44  ---------------------------PADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
                                             L   N++L+G +G GKT ++++LA +
Sbjct: 162 RKQNPEIEEEYIPEYIEKSQRQILKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEV 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
              P +  + T  T+ GYVG +V+ +I+ L+  A   +   +R  V     ++  ++I  
Sbjct: 222 LDVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEARGDIERCQRGIV----FLDEFDKIYT 277

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGGASVGILNLS 193
           +      TS  R+V  K ++   +   E   + +    + +     D      V     S
Sbjct: 278 SSDPL-HTSGNRDVSGKGVQQALLKLVEGSLVKVRDPLSPNSKVTIDTTNILFVSSGAFS 336

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDE----SDRLIDMDTVHRDSIQMVENYGIVFL 249
            +  + + + R  K  +           +     S++L D D    + +    +  +   
Sbjct: 337 NI--EHIIARRMDKRSLGFSSASTSPHEESDQHTSEKLRDSDE---EVVSKARDEMLKQC 391

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309
           D+ D I                                +G I      F     FH    
Sbjct: 392 DQGDLIA-------------------------------FGMIPELVGRFPVIVPFH---- 416

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
                              LNK+    +LT+ + +L+ Q K+  + E + L F+ ++I+ 
Sbjct: 417 ------------------CLNKTHLMSVLTEPKGSLVAQTKKFFENENVELRFSPEAIEM 458

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSE 429
           +A++AV   +     GAR L++++E+ + +  +       K V I+ + ++         
Sbjct: 459 IAEMAVKRKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEINDKSLKDQSFTIIEN 513

Query: 430 T 430
            
Sbjct: 514 R 514


>gi|227495368|ref|ZP_03925684.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
 gi|226831122|gb|EEH63505.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
          Length = 417

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 136/324 (41%), Gaps = 67/324 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L    I    +++E+  +     N  + G    G  +L+   ++++          
Sbjct: 92  HYKRLNAEAILGYPVEMELTKS-----NILLLGPTGTGKTHLARSLARLLQVPFSIVDAT 146

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSGNGI--GV 266
           ++ +        E+  L     + +D+   +E    GI+++DE DKI  +     I   V
Sbjct: 147 ALTEAGYVGEDVENILL----KLIQDADGDIEKAQRGIIYIDEIDKIGRKAENASITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL ++EG+  S            ++  I+T  ILFIA+GAF           
Sbjct: 203 SGEGVQQALLKIIEGTRASVPPQGGRKHPHQQFIEIDTSGILFIAAGAFAGIEDIVKARL 262

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            ++PE  GR PV   +K+L++ D   +L
Sbjct: 263 GKRTLGFGSELKSAHEYGDLYSQVTSEDLHKFGMIPEFIGRLPVVTSVKNLDEDDLVRVL 322

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ L+ QY++L   + + L+FT D++  +A  A  L +     GAR L +++E+ L 
Sbjct: 323 TEPKNALVRQYQQLFVLDDVELEFTRDALREIARKANELKT-----GARALNSILEKTLA 377

Query: 399 DISFSASDL-QEKTVVIDAEYVRL 421
            I F    + Q   V+I ++ V  
Sbjct: 378 PIMFEVPSMPQIAKVIITSDVVAE 401



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 20/236 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RDELMPKNILLVGPTG 63
            P+EI   L++Y+IGQ+DAKRA+++A+ N ++R    A L      EL   NILL+GPTG
Sbjct: 63  KPKEIFDFLNQYVIGQEDAKRALSVAVYNHYKRLNAEAILGYPVEMELTKSNILLLGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   + +++R    
Sbjct: 123 TGKTHLARSLARLLQVPFSIVDATALTEAGYVGEDVENILLKLIQDADGDIEKAQRGIIY 182

Query: 120 ----DEVREQASINAEERILDALVGKTA----TSNTREVFRKKLRDGEISDKEIDIEVAD 171
               D++  +A   +  R +     + A       TR     +        + I+I+   
Sbjct: 183 IDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPHQQFIEID--- 239

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +S I        A +  +  + L  + +G G + K        Y ++  ++  + 
Sbjct: 240 -TSGILFIAAGAFAGIEDIVKARLGKRTLGFGSELKSAHEYGDLYSQVTSEDLHKF 294


>gi|123969398|ref|YP_001010256.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. AS9601]
 gi|166214804|sp|A2BTN8|CLPX_PROMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123199508|gb|ABM71149.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. AS9601]
          Length = 455

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 122/311 (39%), Gaps = 65/311 (20%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +   T    SN  + G    G   L++  ++ +          ++ +    +  D  + L
Sbjct: 130 DSQATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAG-YVGEDVENIL 188

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +      ++++ +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +
Sbjct: 189 LRLLQKSEMNVELAQK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIAN 247

Query: 286 TK-----------YGSINTDHILFIASGAF------------------------------ 304
                           I+T  ILFI  GAF                              
Sbjct: 248 VPPQGGRKHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTK 307

Query: 305 HVSRPAD--------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
            +  P D              L+PE  GR PV   L  L K     ILT     L+ Q+K
Sbjct: 308 KIVDPRDSLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFK 367

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
            L+  + + L F  DS++A+A+ A    +     GAR L++++E ++ DI ++    +  
Sbjct: 368 TLLSMDNVELSFEPDSVEAIANEAYKRKT-----GARALRSIIEELMLDIMYTLPSEENV 422

Query: 410 KTVVIDAEYVR 420
           K   I  + V 
Sbjct: 423 KEFTITKKMVD 433



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 17/307 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------D 49
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R                    
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEDSKNNNATDSQAT 134

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           +   V  +++     DE+ + A  +    I   + G+       ++    + +       
Sbjct: 195 SEMNVELAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGR 254

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                     D S    I GGA +G+ ++ +        G       +       +   +
Sbjct: 255 KHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRD 314

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           S + +++D + +  +       I      D++      + +   R+ + +    L+   +
Sbjct: 315 SLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDN 374

Query: 284 VSTKYGS 290
           V   +  
Sbjct: 375 VELSFEP 381


>gi|323691694|ref|ZP_08105955.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673]
 gi|323504238|gb|EGB20039.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673]
          Length = 473

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 58/314 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           + +      + SN  + G    G   L +  ++++          S+ +     + D+ +
Sbjct: 164 ENQEEKIQIEKSNILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEA--GYIGDDIE 221

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            ++       D+      +GI+F+DE DKI  + +     VS E VQ++LL L+EGS V 
Sbjct: 222 SVVSKLLSAADNDVEKAEHGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVE 281

Query: 286 TKYGS-----------INTDHILFIASGAF------------------------------ 304
              GS           ++T+HILFI  GAF                              
Sbjct: 282 VPVGSNQKNALTPMTTVDTNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESD 341

Query: 305 ---------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                       R   ++PE  GR P+ V L++L K     +L + ++ ++ QY +L++ 
Sbjct: 342 PDILTKVTTEDLRTFGMIPEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLEL 401

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           + + L F +++++ +A+ A+   +     GAR L+ ++E  + DI +    D    +VVI
Sbjct: 402 DEVKLVFEDEALEWIAEEAIKKET-----GARALRAIIEEFMLDIMYEIPKDSNIGSVVI 456

Query: 415 DAEYVRLHIGDFPS 428
              Y+    G    
Sbjct: 457 TRAYLEKSGGPMIE 470



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P  I S LD Y+IGQ+ AK+ +++A+ N ++R  L    +DE       +   NIL++GP
Sbjct: 123 PHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKIQIEKSNILMIGP 182

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 183 TGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 240


>gi|94266600|ref|ZP_01290282.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93452771|gb|EAT03309.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+++     +
Sbjct: 113 SNILLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAG-YVGEDVENILVNLMQAADN 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-------- 286
             +   + GIV++DE DKI  +         VS EGVQ+ LL ++EG+  S         
Sbjct: 172 DPERA-SRGIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPA------------- 310
              +Y  ++T +I+FI  GAF                    +V   +             
Sbjct: 231 PQQEYVKLDTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGEILVQIAS 290

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   +  L + D   IL + ++ L  QY++L   + I L FTE
Sbjct: 291 EDLLSFGLIPELVGRLPVLATMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTE 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            ++ A+A  A+   +     GAR L++VMER + ++ +      + +  VI  + +   
Sbjct: 351 GALSAIAREAIKRKA-----GARGLRSVMERAMLEVMYELPSRDDARECVISEQVITNQ 404



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +  A       EL   NILL+GPTG
Sbjct: 63  LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A N    + R    
Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPERASRGIVY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    +   + G+       ++    +            +      D SN
Sbjct: 183 IDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKLDTSN 242

Query: 179 -FDIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA VG+  +    + +K +G G   + + S +K    L++  S+ L+
Sbjct: 243 IMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGK-SKKKVGEILVQIASEDLL 294


>gi|256842924|ref|ZP_05548412.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256848701|ref|ZP_05554135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|262045891|ref|ZP_06018855.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|293381819|ref|ZP_06627791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|312978251|ref|ZP_07789994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
 gi|256614344|gb|EEU19545.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256714240|gb|EEU29227.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|260573850|gb|EEX30406.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|290921605|gb|EFD98635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus 214-1]
 gi|310894770|gb|EFQ43841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           crispatus CTV-05]
          Length = 421

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          ++T +ILFI  GAF                                
Sbjct: 221 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + +
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ +TV +  +
Sbjct: 341 NLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKD 395

Query: 418 YVRLHIGD--FPSETD 431
            +  H         TD
Sbjct: 396 VITKHAKPKVIRKNTD 411



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E+D+ I+ D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADK-INADDWTRHLTTADLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ ++D    +   +  + +    L+    V+ K+
Sbjct: 294 MIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKF 344


>gi|115441503|ref|NP_001045031.1| Os01g0886600 [Oryza sativa Japonica Group]
 gi|56784314|dbj|BAD82240.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
           Japonica Group]
 gi|56785236|dbj|BAD82124.1| putative CLP protease regulatory subunit CLPX [Oryza sativa
           Japonica Group]
 gi|113534562|dbj|BAF06945.1| Os01g0886600 [Oryza sativa Japonica Group]
          Length = 496

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 71/319 (22%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D + +IE+     D SN  + G    G   L++  ++++          S+ +     + 
Sbjct: 133 DDQNNIEI-----DKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQA--GYVG 185

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLV 279
           ++ + ++    V  +        GIV++DE DKI  +         VS EGVQ+ LL ++
Sbjct: 186 EDVESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKIL 245

Query: 280 EGSSVST-----------KYGSINTDHILFIASGAF------------------------ 304
           EG+ VS            +   I+T  ILFI  GAF                        
Sbjct: 246 EGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRI 305

Query: 305 -----HVSRPA-----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                 V+ P                   L+PE  GR P+ V L +LN+     +LT+ +
Sbjct: 306 NMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPK 365

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           ++L  QY+++     + L FT+ ++  +A  A+  N+     GAR L+ ++E +L +  +
Sbjct: 366 NSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNT-----GARGLRAILESLLLEAMY 420

Query: 403 SASDLQEKTVVIDAEYVRL 421
              D +  +  +DA  V  
Sbjct: 421 EIPDEKTGSERVDAVVVDE 439



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 22/146 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------PADLRD 49
           +PRE+   LD ++IGQ  AK+ +++A+ N ++R                           
Sbjct: 79  TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNNI 138

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LAR+   PFI  + T  T+ GYVG +VE I++ L+  
Sbjct: 139 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLVA 198

Query: 110 AINIVRESRRDEVR----EQASINAE 131
           A   V+ +++  V     ++ +  AE
Sbjct: 199 AEYNVQAAQQGIVYIDEVDKITKKAE 224


>gi|227877365|ref|ZP_03995436.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
 gi|227863033|gb|EEJ70481.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus
           JV-V01]
          Length = 429

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 134/316 (42%), Gaps = 61/316 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 111 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 169

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 170 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 228

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          ++T +ILFI  GAF                                
Sbjct: 229 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDW 288

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + +
Sbjct: 289 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDV 348

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ +TV +  +
Sbjct: 349 NLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKD 403

Query: 418 YVRLHIGD--FPSETD 431
            +  H         TD
Sbjct: 404 VITKHAKPKVIRKNTD 419



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 71  KPVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 130

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 131 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 187

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 188 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 242

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E+D+ I+ D          + +  
Sbjct: 243 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADK-INADDWTRHLTTADLVKFG 301

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ ++D    +   +  + +    L+    V+ K+
Sbjct: 302 MIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKF 352


>gi|123967080|ref|YP_001012161.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus
           marinus str. MIT 9515]
 gi|166214803|sp|A2BZ43|CLPX_PROM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123201446|gb|ABM73054.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus
           str. MIT 9515]
          Length = 455

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 128/327 (39%), Gaps = 65/327 (19%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R   R  E +      +   T    SN  + G    G   L++  ++ +          +
Sbjct: 114 RLTWRLKEENKDNNSNDCHATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATT 173

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSRE 269
           + +    +  D  + L+ +      ++ + +  GI+++DE DKI  +     I   VS E
Sbjct: 174 LTEAG-YVGEDVENILLRLLQKSEMNVDLAQK-GIIYIDEIDKIARKSENPSITRDVSGE 231

Query: 270 GVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSRP 309
           GVQ+ LL ++EG+  +                I+T  ILFI  GAF          + R 
Sbjct: 232 GVQQALLKMLEGTIANVPPQGGRKHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRLGRH 291

Query: 310 A-----------------------------------DLLPEIQGRFPVRVHLKSLNKSDF 334
           +                                    L+PE  GR PV   L  L K   
Sbjct: 292 SIGFTTNSDESKIDAKKLVDSRDALKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETL 351

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+    L+ Q+K L+  + + L+F  +S++A+A+ A    +     GAR L++++E
Sbjct: 352 ESILTEPRDALVKQFKTLLSMDNVELNFEPESVEAIANEAFKRKT-----GARALRSIIE 406

Query: 395 RVLEDISFSASDLQEKT-VVIDAEYVR 420
            ++ D+ ++    +E T   I  + V 
Sbjct: 407 ELMLDLMYTLPSQEEVTKFTITKKMVD 433



 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 122/306 (39%), Gaps = 17/306 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------- 50
           +LT    P EI + LD  ++GQ+ AK+ +++A+ N ++R        ++           
Sbjct: 76  ELTSIPKPLEIKTFLDNQVVGQESAKKILSVAVYNHYKRLTWRLKEENKDNNSNDCHATK 135

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  +
Sbjct: 136 LQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQKS 195

Query: 111 INIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
              V  +++     DE+ + A  +    I   + G+       ++    + +        
Sbjct: 196 EMNVDLAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRK 255

Query: 166 DIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
                    D S    I GGA +G+ ++ +        G       S       +   ++
Sbjct: 256 HPYHDCIQIDTSQILFICGGAFIGLEDIVQKRLGRHSIGFTTNSDESKIDAKKLVDSRDA 315

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            + +++D + +  +       I      D++      + +   R+ + +    L+   +V
Sbjct: 316 LKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTEPRDALVKQFKTLLSMDNV 375

Query: 285 STKYGS 290
              +  
Sbjct: 376 ELNFEP 381


>gi|119025607|ref|YP_909452.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765191|dbj|BAF39370.1| ATP-dependent specificity component of the Clp protease
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 473

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 122/322 (37%), Gaps = 75/322 (23%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               RE  R         D   +      S    N  + G   VG   L++  + VM   
Sbjct: 134 NMEMRESSRIGKERMHGHDDSFEGVQVAKS----NILLLGPTGVGKTYLAQTLAHVMNVP 189

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVA 257
                  ++ +              D++TV +  IQ  +        GIV++DE DKI  
Sbjct: 190 FVIADATTLTEA--------GYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKIAR 241

Query: 258 RDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGA 303
           +   N      VS EGVQ+ LL ++EG+  S                I+T  ILFI  GA
Sbjct: 242 KSGENTSITRDVSGEGVQQALLKILEGTVASVPVEGTRKHREMETVQIDTRDILFICGGA 301

Query: 304 F-------------------------HVSRPA-------------DLLPEIQGRFPVRVH 325
           F                          V +                LLPE  GR PV   
Sbjct: 302 FVGLADIVAQRLGARESGFGAVWHDHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSV 361

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L + D   IL + E+ L+ QY++L   +G+ L FTE +I  +A  ++   +     G
Sbjct: 362 LEELTEDDLARILVEPENALVKQYQKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----G 416

Query: 386 ARRLQTVMERVLEDISFSASDL 407
           AR L++++E+ LED  F    +
Sbjct: 417 ARGLRSIIEKTLEDTMFRLPSM 438



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 24/246 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------------DE 50
            P +I + LD ++IGQ+ AK+ +++A+ N ++R  +                       +
Sbjct: 100 KPAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNMEMRESSRIGKERMHGHDDSFEGVQ 159

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA +   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 160 VAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 219

Query: 111 INIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              V  ++      DE+ + A  + E   I   + G+       ++    +    +    
Sbjct: 220 DGDVARAQQGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTVASVPVEGTR 279

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
              E+     D  +   I GGA VG+ ++         SG               L +  
Sbjct: 280 KHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAVWHDHEVPKRELLAQVS 339

Query: 224 SDRLID 229
           +D L D
Sbjct: 340 ADDLAD 345


>gi|86140704|ref|ZP_01059263.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
 gi|85832646|gb|EAQ51095.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella
           blandensis MED217]
          Length = 410

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 131/324 (40%), Gaps = 63/324 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +     + E DIE+  +     N  + G    G   +++  ++++           +
Sbjct: 89  NHYKRLLQPETEDDIEIQKS-----NIVMVGQTGTGKTLMAKTIARMLNVPLAIVDATVL 143

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D    L  +      +++  +  GIVF+DE DKI  +     I   VS EG
Sbjct: 144 TEAG-YVGEDVESILTRLLQAADYNLEKAQ-RGIVFIDEIDKIARKSDNPSITRDVSGEG 201

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-------------- 305
           VQ+ LL L+EG++V+            K+  +NT+HILF+A GAF               
Sbjct: 202 VQQALLKLLEGTTVNVPPKGGRKHPDQKFIEVNTEHILFVAGGAFDGIERVISKRLNMQA 261

Query: 306 ------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                     +   L+PEI GR PV  H+  L+    R ILT+ 
Sbjct: 262 VGFSASMSEDVIDRENLLKYIIPKDLKDFGLIPEIIGRLPVLTHMDPLDAKTLRAILTEP 321

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ +I QY++L + + I  + T  ++D + + A+        +GAR L+++ E +  D  
Sbjct: 322 KNAIIKQYEKLFEMDDIEFEITGPALDYIVNKAIEYK-----LGARGLRSLCEAIFTDAM 376

Query: 402 FSASDLQEKTVVIDAEYVRLHIGD 425
           F        +  +D EY    +  
Sbjct: 377 FDLPSSDLNSFKVDKEYAEFKLEK 400



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   LD YIIGQ   K+ +A+A+ N ++R   P    D E+   NI++VG TG GK
Sbjct: 61  KPKEIKDFLDEYIIGQDYTKKVMAVAVYNHYKRLLQPETEDDIEIQKSNIVMVGQTGTGK 120

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + +++R  V
Sbjct: 121 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQRGIV 176


>gi|229552212|ref|ZP_04440937.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU
           [Lactobacillus rhamnosus LMS2-1]
 gi|229314398|gb|EEN80371.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU
           [Lactobacillus rhamnosus LMS2-1]
          Length = 167

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/144 (49%), Positives = 106/144 (73%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL   +++E+ PKN+L++GPTGVGKT
Sbjct: 6   TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA++  APF+KVE TKFTE+GYVGR+VE ++RDL + A+ +  E +  +VR +A 
Sbjct: 66  EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125

Query: 128 INAEERILDALVGKTATSNTREVF 151
             A +R++  LV        ++  
Sbjct: 126 KEANKRLVKILVPAIRKEKNKQSH 149


>gi|257791674|ref|YP_003182280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           lenta DSM 2243]
 gi|257475571|gb|ACV55891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           lenta DSM 2243]
          Length = 471

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 133/320 (41%), Gaps = 63/320 (19%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +D +V    S   N  + G    G   L++  ++ +          ++ +    +  D  
Sbjct: 146 VDGDVELAKS---NIMLLGPTGSGKTLLAQTLARTLRVPFAIADATTLTEAG-YVGEDVE 201

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS 282
           + L+ + T     I   E  GI+++DE DK+  +     I   VS EGVQ+ LL +VEG+
Sbjct: 202 NILLKLMTAADFDIPRAEI-GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGT 260

Query: 283 SVST-----------KYGSINTDHILFIASGAF---------HVSR-------------- 308
             S            +   I+T +ILFI  GAF          V +              
Sbjct: 261 EASVPPQGGRKHPQQELIHIDTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKK 320

Query: 309 -----------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P DL     +PE  GR PV   L  L++ D   ILT+ ++ L+ QY ++
Sbjct: 321 HAEAELLARVLPEDLNKYGMIPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKM 380

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
            + E  +L F  +++ A+A  AV   +     GAR L+++ ERVL+D+ +   + +   T
Sbjct: 381 FEFEDSVLTFEPEALKAIAHEAVEHGT-----GARGLRSICERVLQDVMYDLPEQKGPST 435

Query: 412 VVIDAEYVRLHIGDFPSETD 431
           V I A  +          TD
Sbjct: 436 VTIRATDITGETKPDIEPTD 455



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+ +EL  +++GQ+ AKRA+++A+ N ++R  L AD  D   EL   NI+L+GPTG 
Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES------- 117
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  +       
Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAADFDIPRAEIGIIYI 225

Query: 118 -RRDEVREQASINAEER 133
              D+V  +A   +  R
Sbjct: 226 DEIDKVARKAENLSITR 242


>gi|331001371|ref|ZP_08324995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parasutterella excrementihominis YIT 11859]
 gi|329568630|gb|EGG50432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Parasutterella excrementihominis YIT 11859]
          Length = 441

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 64/324 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR   I D   +          SN  + G    G   L++  +K++          
Sbjct: 121 HYKRLRSKFIGDDSDE----KVEIQKSNILLIGPTGSGKTLLAQSLAKMLNVPFAIADAT 176

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + ++ +       ++  +  GI++LDE DKI  +     I   VS 
Sbjct: 177 TLTEAG-YVGEDVENVILKLLQSCNMDLKRAQ-MGIIYLDEIDKIARKSENPSITRDVSG 234

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL LVEG+  +                ++T +ILFI  GAF             
Sbjct: 235 EGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPVDTSNILFICGGAFEGLDKIIRRRTER 294

Query: 306 -------VSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                    + AD                    L+PE+ GR PV   L  L++     IL
Sbjct: 295 SGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGLIPELVGRLPVIATLDDLDEEALIRIL 354

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ ++ QY  L + EG++L+   D++   A +A    +     GAR L++++E  L 
Sbjct: 355 TEPKNAVLKQYARLFELEGVVLEVEPDALKEAAKMAQERKT-----GARGLRSIIENALL 409

Query: 399 DISFSASDLQEK-TVVIDAEYVRL 421
              F     ++   VV+ A  +R 
Sbjct: 410 SAMFEIPSRKDVARVVVKASTMRD 433



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +       +D + E+   NILL+GPT
Sbjct: 92  TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA++   PF   + T  TE GYVG +VE +I  L+      ++ ++    
Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLLQSCNMDLKRAQMGII 211

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++    + +   +      +  +   D S
Sbjct: 212 YLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPVDTS 271

Query: 178 NFDIPGGASVGILN 191
           N     G +   L+
Sbjct: 272 NILFICGGAFEGLD 285


>gi|332981497|ref|YP_004462938.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
           australiensis 50-1 BON]
 gi|332699175|gb|AEE96116.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella
           australiensis 50-1 BON]
          Length = 428

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 60/315 (19%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D++        SN  + G    G   L++  ++++          S+ +    +  D  +
Sbjct: 98  DVKSDGVELQKSNIIMLGPTGSGKTLLAQTLARILNVPFAMADATSLTEAG-YVGEDVEN 156

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 157 ILLKLIQAADYDVEKAE-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTI 215

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            +            ++  I+T +ILFI  GAF                            
Sbjct: 216 ANVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRLGEKAMGFGAEIKTKKEQ 275

Query: 306 -------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                     P DLL     PE+ GR P+ V L +L+K     ILT+ ++ LI QY++L 
Sbjct: 276 DVGELLKHIMPQDLLKFGLIPEMVGRLPIIVTLHALDKKALMTILTEPKNALIKQYQKLF 335

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412
           + +G+ L+F E +I A+AD A+  N+     GAR L+ ++E ++ +I +     ++ +  
Sbjct: 336 EMDGVTLEFEEAAIAAVADKALERNT-----GARGLRAILEDIMLNIMYEIPSREDIEKC 390

Query: 413 VIDAEYVRLHIGDFP 427
           VI  + +  H     
Sbjct: 391 VITEDTIVNHTEPMI 405



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 11/231 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
            P EI + LD+Y++GQ+DAK+ +++A+ N ++R          EL   NI+++GPTG GK
Sbjct: 62  KPAEIKAILDQYVVGQEDAKKTLSVAVYNHYKRINSDVKSDGVELQKSNIIMLGPTGSGK 121

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 122 TLLAQTLARILNVPFAMADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIVYIDE 181

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    + +                 D +N   
Sbjct: 182 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQIDTTNILF 241

Query: 182 PGGASVGILN---LSELFSKVMGSGRKKKIRMS--VQKCYPELMRDESDRL 227
             G +   ++    + L  K MG G + K +    V +    +M  +  + 
Sbjct: 242 ICGGAFDGIDKIIQNRLGEKAMGFGAEIKTKKEQDVGELLKHIMPQDLLKF 292


>gi|315604694|ref|ZP_07879757.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313706|gb|EFU61760.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 419

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 58/295 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L+   ++++          ++ +    +  D  + L+ +      
Sbjct: 113 SNILLLGPTGTGKTHLARCLARLLDVPFAIVDATALTEAG-YVGEDVENILLRLIQEADG 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 172 DIKKAEK-GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF-----------------------HVSRPADL-------- 312
              ++  I+T  ILFIA+GAF                         S   DL        
Sbjct: 231 PHQQFLEIDTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSASEMGDLYEAVSAED 290

Query: 313 ------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                 +PE  GR P+    K L + D   +LT+  ++L+ QY+ L   +GI L+FT ++
Sbjct: 291 LHKFGMIPEFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFDLDGIDLEFTHEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A    +     GAR L ++ME  L D+ F      +   VVI  + V 
Sbjct: 351 LLAIAARANERKT-----GARGLSSIMEATLSDLMFDLPSRDDVARVVITRDLVE 400



 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGV 64
            PREI   L+ ++IGQ  AKRA+++A+ N ++R +       E M     NILL+GPTG 
Sbjct: 64  KPREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSRDAGNAEDMLGTKSNILLLGPTGT 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +     
Sbjct: 124 GKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEKGIIYV 183

Query: 120 ---DEVREQASINAEER 133
              D++  +A   +  R
Sbjct: 184 DEIDKIGRKAENASITR 200


>gi|254526778|ref|ZP_05138830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538202|gb|EEE40655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Prochlorococcus marinus str. MIT 9202]
          Length = 455

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 126/327 (38%), Gaps = 65/327 (19%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           R   +  E S      +   T    SN  + G    G   L++  ++ +          +
Sbjct: 114 RLAWKVKEESKNSNSTDSQATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATT 173

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSRE 269
           + +    +  D  + L+ +      ++++ +  GI+++DE DKI  +     I   VS E
Sbjct: 174 LTEAG-YVGEDVENILLRLLQKSDMNVELAQK-GIIYIDEIDKIARKSENPSITRDVSGE 231

Query: 270 GVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSRP 309
           GVQ+ LL ++EG+  +                I+T  ILFI  GAF          + + 
Sbjct: 232 GVQQALLKMLEGTIANVPPQGGRKHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKH 291

Query: 310 A-----------------------------------DLLPEIQGRFPVRVHLKSLNKSDF 334
           +                                    L+PE  GR PV   L  L K   
Sbjct: 292 SIGFTTNSDKNKVDTKKIIDPRDSLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETL 351

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT     L+ Q+K L+  + + L F  DS++A+A+ A    +     GAR L++++E
Sbjct: 352 ESILTQPRDALVKQFKTLLSMDNVELKFEPDSVEAIANEAFKRKT-----GARALRSIIE 406

Query: 395 RVLEDISFSASDLQ-EKTVVIDAEYVR 420
            ++ D+ ++    +  K   I  + V 
Sbjct: 407 ELMLDVMYTLPSEENIKEFTITKKMVD 433



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 123/307 (40%), Gaps = 17/307 (5%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------D 49
           ++LT    P EI S LD  ++GQ+ AK+ +++A+ N ++R                    
Sbjct: 75  LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEESKNSNSTDSQAT 134

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +L   NILL+GPTG GKT +++ LA     PF   + T  TE GYVG +VE I+  L+  
Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLLQK 194

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           +   V  +++     DE+ + A  +    I   + G+       ++    + +       
Sbjct: 195 SDMNVELAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGR 254

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
                     D S    I GGA +G+ ++ +        G       +       +   +
Sbjct: 255 KHPYHDCIQIDTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDKNKVDTKKIIDPRD 314

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
           S + +++D + +  +       I      D++      + +   R+ + +    L+   +
Sbjct: 315 SLKNLELDDLVKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDN 374

Query: 284 VSTKYGS 290
           V  K+  
Sbjct: 375 VELKFEP 381


>gi|303257391|ref|ZP_07343404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Burkholderiales bacterium 1_1_47]
 gi|302859748|gb|EFL82826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Burkholderiales bacterium 1_1_47]
          Length = 441

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 64/324 (19%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR   I D   +          SN  + G    G   L++  +K++          
Sbjct: 121 HYKRLRSKFIGDDSDE----KVEIQKSNILLIGPTGSGKTLLAQSLAKMLNVPFAIADAT 176

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + ++ +       ++  +  GI++LDE DKI  +     I   VS 
Sbjct: 177 TLTEAG-YVGEDVENVILKLLQSCNMDLKRAQ-MGIIYLDEIDKIARKSENPSITRDVSG 234

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFH------------ 305
           EGVQ+ LL LVEG+  +                ++T +ILFI  GAF             
Sbjct: 235 EGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPVDTSNILFICGGAFEGLDKIIRRRTER 294

Query: 306 -------VSRPAD--------------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                    + AD                    L+PE+ GR PV   L  L++     IL
Sbjct: 295 SGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGLIPELVGRLPVIATLDDLDEEALIRIL 354

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ ++ ++ QY  L + EG++L+   D++   A +A    +     GAR L++++E  L 
Sbjct: 355 TEPKNAVLKQYARLFELEGVVLEVEPDALKEAAKMAQERKT-----GARGLRSIIENALL 409

Query: 399 DISFSASDLQEK-TVVIDAEYVRL 421
              F     ++   VV+ A  +R 
Sbjct: 410 SAMFEIPSRKDVARVVVKASTMRD 433



 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 10/194 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDELMPKNILLVGPT 62
           +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R +       +D + E+   NILL+GPT
Sbjct: 92  TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LA++   PF   + T  TE GYVG +VE +I  L+      ++ ++    
Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLLQSCNMDLKRAQMGII 211

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++    + +   +      +  +   D S
Sbjct: 212 YLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPVDTS 271

Query: 178 NFDIPGGASVGILN 191
           N     G +   L+
Sbjct: 272 NILFICGGAFEGLD 285


>gi|301631595|ref|XP_002944883.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like
           [Xenopus (Silurana) tropicalis]
          Length = 421

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 75/328 (22%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +     DK    EV  + S   N  + G    G   L++  ++ +          ++
Sbjct: 95  NHYKRLRYKDKADKDEVELSKS---NILLIGPTGSGKTLLAQTLARQLDVPFVMADATTL 151

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ +    +Q           GI+++DE DKI  +     I  
Sbjct: 152 TEA--------GYVGEDVENIISKLLQSCNYDVEKAQRGIIYIDEIDKISRKSDNPSITR 203

Query: 265 GVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL L+EG+  S             +  I+T ++LFI  GAF         
Sbjct: 204 DVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQIDTTNVLFICGGAFAGLEKVIEN 263

Query: 305 -------------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDF 334
                                        P DL+     PE+ GR PV   L  L++   
Sbjct: 264 RTEASGIGFGAAVRSKQQRSISEVFQDIEPEDLIKFGIIPELVGRMPVVTSLAELSEDAL 323

Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394
             ILT+ ++ L  QY +L+  EG+ L+    ++ A+A  A+   +     GAR L++++E
Sbjct: 324 VQILTEPKNALAKQYSKLLSMEGVELEIRPAALKAIARKALARKT-----GARGLRSILE 378

Query: 395 RVLEDISFSASDLQE-KTVVIDAEYVRL 421
           + L    F   +    + VV+D   +  
Sbjct: 379 QALIGTMFDLPNAANVEKVVVDESTIEE 406



 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGV 64
           +P EI + LD Y+IGQ+ AKR +A+A+ N ++R +          EL   NILL+GPTG 
Sbjct: 67  TPAEIKANLDNYVIGQEKAKRTLAVAVYNHYKRLRYKDKADKDEVELSKSNILLIGPTGS 126

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR    PF+  + T  TE GYVG +VE II  L+      V +++R
Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIISKLLQSCNYDVEKAQR 181


>gi|257463898|ref|ZP_05628284.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           D12]
 gi|317061427|ref|ZP_07925912.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12]
 gi|313687103|gb|EFS23938.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12]
          Length = 430

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 163/368 (44%), Gaps = 69/368 (18%)

Query: 111 INIVRESRRDEVREQASINA--EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           I+ +   + +E++E+       +ER    L         R ++++K    +  D   ++E
Sbjct: 68  IHQMEILKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKGKDN-NEVE 126

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +  +     N  + G    G   L++  ++++          ++ +    +  D  + L+
Sbjct: 127 LQKS-----NVLLIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAG-YVGDDVENVLV 180

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SV 284
            +      +I+  E  GI+++DEFDKI  +     I   VS EGVQ+ LL ++EG+   V
Sbjct: 181 RLIQAADYNIENAEK-GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQV 239

Query: 285 STKYG---------SINTDHILFIASGAFH------------------------------ 305
             + G          I+T +ILFI  GAF                               
Sbjct: 240 PPEGGRKHPNQPLIEIDTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAPKEQMRE 299

Query: 306 -----VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P D+     +PE+ GR P+  +L+ L++  F  ILT  ++ ++ QY++L + 
Sbjct: 300 GEFLSQVLPEDITKRGIIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQYQKLFQM 359

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           EG+ L+FTE++++ +A +A++       IGAR L++++E  + ++ +    D   + V++
Sbjct: 360 EGVELEFTEEALEEVAHLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSSIQKVIL 414

Query: 415 DAEYVRLH 422
             + V  H
Sbjct: 415 GKDAVLDH 422



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 23/249 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------ADLRDELMPKNIL 57
             P EI  +LD Y+IGQ+ AK+ +A+A+ N ++R              +   EL   N+L
Sbjct: 74  LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKGKDNNEVELQKSNVL 133

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A   +  +
Sbjct: 134 LIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAADYNIENA 193

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE  + A  +    I   + G+       ++    L                 
Sbjct: 194 EKGIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKHPNQPLI 253

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI---RMSVQKCYPELMRDESDRLID 229
             D SN     G +       E   KV+     KK       +Q    ++   E    + 
Sbjct: 254 EIDTSNILFIVGGAF------EGLGKVIQGRLHKKTLGFGADIQAPKEQMREGEFLSQVL 307

Query: 230 MDTVHRDSI 238
            + + +  I
Sbjct: 308 PEDITKRGI 316


>gi|229817801|ref|ZP_04448083.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM
           20098]
 gi|229785590|gb|EEP21704.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM
           20098]
          Length = 444

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 126/303 (41%), Gaps = 72/303 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L++  +KVM          ++ +              D++TV + 
Sbjct: 129 SNILLLGPTGVGKTYLAQTLAKVMNVPFVITDATTLTEA--------GYVGDDVETVLQR 180

Query: 237 SIQMVEN------YGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVST- 286
            +Q  +       +GIV++DE DKI  +   N      VS EGVQ+ LL ++EG+  S  
Sbjct: 181 LLQAADGDVSKAEHGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTIASVP 240

Query: 287 ----------KYGSINTDHILFIASGAF----------------------HVSRPAD--- 311
                     +   INT  ILFI  GAF                      H     D   
Sbjct: 241 AEGSRKHREQETIQINTRGILFICGGAFVGLTDIIKNRLGARESGFGAKWHDHEVPDGEL 300

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        LLPE  GR PV   L+ L + D   +LT   + L+ QY +L   +G+
Sbjct: 301 LQQVCADDLAEFGLLPEFIGRLPVVSVLQELKEDDLAAVLTQPSNALVKQYMKLFAVDGV 360

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAE 417
            L FT+D++ A+A  A+   +     GAR L++++ER L+D  F    +     V++D +
Sbjct: 361 TLTFTDDAVAAIARTAIRQGT-----GARGLRSIIERTLQDTMFQLPSMNHVVEVIVDGD 415

Query: 418 YVR 420
            V 
Sbjct: 416 AVD 418



 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 26/211 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------ADLRD 49
            P +I   LDRY+IGQQ AKRA+++A+ N ++R  +                     LRD
Sbjct: 64  KPMQINDYLDRYVIGQQTAKRALSVAVYNHYKRVNMELREAASQVAPAGGEDAASDPLRD 123

Query: 50  E-LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
             +   NILL+GPTGVGKT +++ LA++   PF+  + T  TE GYVG +VE +++ L+ 
Sbjct: 124 VQVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQ 183

Query: 109 VAINIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISD 162
            A   V ++       DE+ + A  + E   I   + G+       ++    +       
Sbjct: 184 AADGDVSKAEHGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTIASVPAEG 243

Query: 163 KEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                E      +      I GGA VG+ ++
Sbjct: 244 SRKHREQETIQINTRGILFICGGAFVGLTDI 274


>gi|260906248|ref|ZP_05914570.1| ATP-dependent protease ATP-binding subunit ClpX [Brevibacterium
           linens BL2]
          Length = 397

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 131/307 (42%), Gaps = 64/307 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           +  +     D E++I         SN  + G    G   L++  +K +          ++
Sbjct: 104 EDTKTLGSDDTEVEI-------AKSNILLVGPTGSGKTYLAQSLAKRLDVPFAVADATAL 156

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + L+ +       IQ  E +GI+++DE DKI  +     I   VS EG
Sbjct: 157 TEAG-YVGEDVENILLKLIQAADFDIQKAE-HGIIYIDEIDKIARKSENPSITRDVSGEG 214

Query: 271 VQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFHVSR----------- 308
           VQ+ LL ++EG+  S             +  I+T ++LFI +GAF               
Sbjct: 215 VQQALLKILEGTQASVPPQGGRKHPHQDFLQIDTTNVLFIVAGAFAGMEEIVAGRKGKHG 274

Query: 309 ---------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
                                P DL     +PE  GR PV   + +L+++    ILT+ +
Sbjct: 275 IGFGALLQSKNDEEDLYADILPEDLLKFGLIPEFIGRLPVLATVSTLDRAALISILTEPK 334

Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           + L+ QY+ + + + + L F  D+++A++D+A+   +     GAR L++++E VL+ + F
Sbjct: 335 NALVKQYQRMFEFDNVELRFETDALEAISDLALLRGT-----GARGLRSILEEVLQPVMF 389

Query: 403 SASDLQE 409
                + 
Sbjct: 390 DVPSRRG 396



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----------PADLRDELMPKNI 56
            PREI   L  Y++GQ+ AK+A+++A+ N ++R +              D   E+   NI
Sbjct: 64  KPREIFDFLQEYVVGQEPAKKALSVAVYNHYKRIRSLQGAEDTKTLGSDDTEVEIAKSNI 123

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           LLVGPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   +++
Sbjct: 124 LLVGPTGSGKTYLAQSLAKRLDVPFAVADATALTEAGYVGEDVENILLKLIQAADFDIQK 183

Query: 117 SRR 119
           +  
Sbjct: 184 AEH 186


>gi|256750733|ref|ZP_05491618.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256750316|gb|EEU63335.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 173

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/139 (56%), Positives = 114/139 (82%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR  L  D ++E+ PKNI++VGPTGVG
Sbjct: 3   NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+RR+A+L  APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E +  +V E+
Sbjct: 63  KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122

Query: 126 ASINAEERILDALVGKTAT 144
           A   AE+R++D +VGK   
Sbjct: 123 AKKIAEDRLIDYIVGKRKN 141


>gi|295692729|ref|YP_003601339.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           crispatus ST1]
 gi|295030835|emb|CBL50314.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           crispatus ST1]
          Length = 421

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 61/316 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          ++T +ILFI  GAF                                
Sbjct: 221 PQGGRKHPQQEMIKMDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  + +
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDV 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD A+  N     +GAR L+T++E  + DI +     ++ +TV +  +
Sbjct: 341 NLKFTDGALKAIADSAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKD 395

Query: 418 YVRLHIGD--FPSETD 431
            +  H         TD
Sbjct: 396 VITKHAKPKVIRKNTD 411



 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 19/291 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  ELD+Y+IGQ  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R  +    
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIY--- 179

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +   E  I  +                
Sbjct: 180 ----IDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTI-ASVPPQGGRKHPQQEMIK 234

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---------TVHRDS 237
           +   N+  +         +       +K       +E+D+ I+ D          + +  
Sbjct: 235 MDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADK-INADDWTRHLTTADLVKFG 293

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +       I  +   DK+ ++D    +   +  + +    L+    V+ K+
Sbjct: 294 MIPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKF 344


>gi|147866723|emb|CAN80513.1| hypothetical protein VITISV_026067 [Vitis vinifera]
          Length = 469

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 65/248 (26%)

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTK--- 287
           V   +++  +  GIV++DE DKI  +   S  G  VS EGVQ+ LL ++EG+ V+     
Sbjct: 170 VAEFNVEAAQQ-GIVYIDEVDKITKKAESSNTGRDVSGEGVQQALLKMLEGTIVNVPDKG 228

Query: 288 --------YGSINTDHILFIASGAF----------------------------------- 304
                      I+T  ILFI  GAF                                   
Sbjct: 229 GRKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAV 288

Query: 305 ------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                       DL+     PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++
Sbjct: 289 VTSSLLESVESGDLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKML 348

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
               + L FTE+++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T +
Sbjct: 349 SMNNVKLHFTENALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDM 403

Query: 414 IDAEYVRL 421
           +DA  V  
Sbjct: 404 VDAVLVDE 411


>gi|118587402|ref|ZP_01544828.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118432226|gb|EAV38966.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 429

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 65/302 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +        E+  L     + + 
Sbjct: 122 SNILLIGPTGSGKTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVL----KLLQA 177

Query: 237 SIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
           +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S       
Sbjct: 178 ADFDVEKAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGR 237

Query: 287 -----KYGSINTDHILFIASGAF-------------------HVSRPA------------ 310
                +Y  ++T +ILFI  GAF                   H  +              
Sbjct: 238 KHPQQEYIQVDTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQ 297

Query: 311 ---------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ L 
Sbjct: 298 LTDQDVIKFGLIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLV 357

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           F   ++  +A +A++  S     GAR L+++ME  +++  +      +   V++    V 
Sbjct: 358 FDPKALKEMAKIAIDKKS-----GARGLRSIMESTMKETMYEIPSKPDVAKVLVTKAAVD 412

Query: 421 LH 422
             
Sbjct: 413 GK 414



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 123/268 (45%), Gaps = 16/268 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R           EL   NILL+GPTG G
Sbjct: 74  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 133

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R     D
Sbjct: 134 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYID 193

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+    +  ++    +            +      D SN  
Sbjct: 194 EIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQVDTSNIL 253

Query: 180 DIPGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTV 233
            I GGA  GI +     L E         +++K + + +    +L   +  +  +  + +
Sbjct: 254 FIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQLTDQDVIKFGLIPEFL 313

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            R  I  + N   ++ D+  KI+ +   
Sbjct: 314 GRLPIISILNP--LYEDDLVKILTKPKN 339


>gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 60/299 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + L+++     +
Sbjct: 113 SNILLIGPTGSGKTLLAQTLARILNVPFTIADATTLTEAG-YVGEDVENILVNLMQAADN 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST-------- 286
             +   + GIV++DE DKI  +         VS EGVQ+ LL ++EG+  S         
Sbjct: 172 DPERA-SRGIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF--------------------HVSRPA------------- 310
              +Y  ++T +I+FI  GAF                    +V   +             
Sbjct: 231 PQQEYVKLDTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGETLVQIAS 290

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  L+PE+ GR PV   +  L + D   IL + ++ L  QY++L   + I L FTE
Sbjct: 291 EDLLSFGLIPELVGRLPVLSTMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTE 350

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
            ++ A+A  A+   +     GAR L++VMER + ++ +      + +  VI  + +   
Sbjct: 351 GALSAIAREAIKRKA-----GARGLRSVMERAMLEVMYELPSRDDARECVISEQVITNQ 404



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTG 63
             P EI   LD Y++GQ+ AKR++A+A+ N ++R +  A       EL   NILL+GPTG
Sbjct: 63  LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR+   PF   + T  TE GYVG +VE I+ +L+  A N    + R    
Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADNDPERASRGIVY 182

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    +   + G+       ++    +            +      D SN
Sbjct: 183 IDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKLDTSN 242

Query: 179 -FDIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA VG+  +    + +K +G G   + + S +K    L++  S+ L+
Sbjct: 243 IMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGK-SKKKVGETLVQIASEDLL 294


>gi|154487069|ref|ZP_02028476.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis
           L2-32]
 gi|154084932|gb|EDN83977.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis
           L2-32]
          Length = 437

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 122/322 (37%), Gaps = 75/322 (23%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               RE  R         D   +      S    N  + G   VG   L++  + VM   
Sbjct: 98  NMEMRESSRIGKERMHGHDDSFEGVQVAKS----NILLLGPTGVGKTYLAQTLAHVMNVP 153

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVA 257
                  ++ +              D++TV +  IQ  +        GIV++DE DKI  
Sbjct: 154 FVIADATTLTEA--------GYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKIAR 205

Query: 258 RDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGA 303
           +   N      VS EGVQ+ LL ++EG+  S                I+T  ILFI  GA
Sbjct: 206 KSGENTSITRDVSGEGVQQALLKILEGTVASVPVEGTRKHREMETVQIDTRDILFICGGA 265

Query: 304 F-------------------------HVSRPA-------------DLLPEIQGRFPVRVH 325
           F                          V +                LLPE  GR PV   
Sbjct: 266 FVGLADIVAQRLGARESGFGAAWHDHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSV 325

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L+ L + D   IL + E+ L+ QY++L   +G+ L FTE +I  +A  ++   +     G
Sbjct: 326 LEELTEDDLARILVEPENALVKQYQKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----G 380

Query: 386 ARRLQTVMERVLEDISFSASDL 407
           AR L++++E+ LED  F    +
Sbjct: 381 ARGLRSIIEKTLEDTMFRLPSM 402



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 24/246 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----------------DE 50
            P +I + LD ++IGQ+ AK+ +++A+ N ++R  +                       +
Sbjct: 64  KPAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNMEMRESSRIGKERMHGHDDSFEGVQ 123

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NILL+GPTGVGKT +++ LA +   PF+  + T  TE GYVG +VE +++ L+  A
Sbjct: 124 VAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 183

Query: 111 INIVRESR-----RDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              V  ++      DE+ + A  + E   I   + G+       ++    +    +    
Sbjct: 184 DGDVARAQQGIVYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTVASVPVEGTR 243

Query: 165 IDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
              E+     D  +   I GGA VG+ ++         SG               L +  
Sbjct: 244 KHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWHDHEVPKRELLAQVS 303

Query: 224 SDRLID 229
           +D L D
Sbjct: 304 ADDLAD 309


>gi|223938521|ref|ZP_03630413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium
           Ellin514]
 gi|223892783|gb|EEF59252.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium
           Ellin514]
          Length = 432

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 73/327 (22%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---PE 218
           D+  ++E+  +     N  + G    G   L+   ++++          ++ +      +
Sbjct: 115 DRHAEVEIEKS-----NILMVGPTGSGKTLLARTLAQILDVPFAIADATTLTEAGYVGED 169

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLL 276
           +       L + D   + +       GIV++DE DKI  +     I   VS EGVQ+ LL
Sbjct: 170 VENIILRLLQNADYDVKRA-----QRGIVYIDEIDKIARKTENVSITRDVSGEGVQQALL 224

Query: 277 PLVEGSSVST-----------KYGSINTDHILFIASGAF--------------------- 304
            ++EG+  +            +Y  ++T HILFI  GAF                     
Sbjct: 225 KILEGTICNVPPQGGRKHPQQEYIRVDTSHILFICGGAFVGLEKVIHRRLGKHVMGFNAV 284

Query: 305 ---------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                              P DL     +PE  GR P+   L  L +     ILTD ++ 
Sbjct: 285 EQGHKAASVDRLQILQHIEPEDLLSFGFIPEFIGRLPMMTVLSELTEDQLVSILTDPKNA 344

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ Q+ +L+  EG+ L+F+ED++  L+  A+   +     GAR L+ ++ER++ D+ +  
Sbjct: 345 LVKQFGKLLAMEGVELEFSEDALRELSFQALKKGT-----GARALRGLLERIMLDVMYDI 399

Query: 405 SDLQEK-TVVIDAEYVRLHIGDFPSET 430
               +  +V I    VR          
Sbjct: 400 PGSDDVLSVTITRPVVRNESKPLIRRK 426



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 17/132 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----------------RDE 50
            P +I  +LDR+ IGQ  AK+ +A+A+ N ++R                          E
Sbjct: 62  KPIDIKRQLDRHCIGQDHAKKTLAVAVHNHYKRILHEPGAQANETEGAEDLAADRHAEVE 121

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   NIL+VGPTG GKT ++R LA++   PF   + T  TE GYVG +VE II  L+  A
Sbjct: 122 IEKSNILMVGPTGSGKTLLARTLAQILDVPFAIADATTLTEAGYVGEDVENIILRLLQNA 181

Query: 111 INIVRESRRDEV 122
              V+ ++R  V
Sbjct: 182 DYDVKRAQRGIV 193


>gi|323485619|ref|ZP_08090959.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum
           WAL-14163]
 gi|323401058|gb|EGA93416.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum
           WAL-14163]
          Length = 488

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 58/314 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           + +      + SN  + G    G   L +  ++++          S+ +     + D+ +
Sbjct: 179 ENQEEKVQIEKSNILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEA--GYIGDDIE 236

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            ++       D+      +GI+F+DE DKI  + +     VS E VQ++LL L+EGS V 
Sbjct: 237 SVVSKLLSAADNDVEKAEHGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVE 296

Query: 286 TKYGS-----------INTDHILFIASGAF------------------------------ 304
              GS           ++T+HILFI  GAF                              
Sbjct: 297 VPVGSNQKNALTPMTTVDTNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESD 356

Query: 305 ---------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                       R   ++PE  GR P+ V L++L K     +L + ++ ++ QY +L++ 
Sbjct: 357 PDILTKVTTEDLRTFGMIPEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLEL 416

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           + + L F +++++ +A+ A+   +     GAR L+ ++E  + DI +    D    +VVI
Sbjct: 417 DEVKLVFEDEALEWIAEEAIKKET-----GARALRAIIEEFMLDIMYEIPKDSNIGSVVI 471

Query: 415 DAEYVRLHIGDFPS 428
              Y+    G    
Sbjct: 472 TRAYLEKSGGPMIE 485



 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 7/118 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61
           P  I S LD Y+IGQ+ AK+ +++A+ N ++R  L    +DE       +   NIL++GP
Sbjct: 138 PHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKVQIEKSNILMIGP 197

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           TG GKT + + LARL   P    + T  TE GY+G ++E ++  L+  A N V ++  
Sbjct: 198 TGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 255


>gi|56416581|ref|YP_153655.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222474948|ref|YP_002563363.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma
           marginale str. Florida]
 gi|255002921|ref|ZP_05277885.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Puerto Rico]
 gi|255004049|ref|ZP_05278850.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Virginia]
 gi|269959004|ref|YP_003328793.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
 gi|81359219|sp|Q5PBC9|CLPX_ANAMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763829|sp|B9KHZ5|CLPX_ANAMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|56387813|gb|AAV86400.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419084|gb|ACM49107.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma
           marginale str. Florida]
 gi|269848835|gb|ACZ49479.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str.
           Israel]
          Length = 405

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 137/322 (42%), Gaps = 66/322 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR+      E++I         SN  + G    G   L+   ++V+          
Sbjct: 88  HYKRLRNS-GVISEVEI-------SKSNVLLIGPTGSGKTLLARTLARVLQVPFAMADAT 139

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +      +++  +  GI+++DE DKI  +     I   VS 
Sbjct: 140 TLTEAG-YVGEDVENILLKLLQAANFNVEAAQ-RGIIYIDEVDKISRKSENASITRDVSG 197

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S            ++  INTD+ILFI  GAF             
Sbjct: 198 EGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQINTDNILFIFGGAFDGLEKIIEARNRG 257

Query: 305 -------HVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                  +V + AD                  L+PE  GR PV   L  L++     IL 
Sbjct: 258 SCMGFEANVQKIADKRKDILCYTEPEDLVKFGLIPEFVGRIPVVTSLGRLDEETLYRILV 317

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +++L+ QY +L + + + L F   ++ A+A  AV  N+     GAR L+ +ME +L D
Sbjct: 318 EPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKKAVARNT-----GARGLRAIMESLLLD 372

Query: 400 ISFSASDLQEKTVVIDAEYVRL 421
             F+    +   VV+DA  V  
Sbjct: 373 FMFNPLGCEGGKVVVDAAMVED 394



 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 7/231 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           F+  P EI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPTG
Sbjct: 56  FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R    
Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQRGIIY 175

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + +  +    I   + G+       +V    +                   +  N
Sbjct: 176 IDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQINTDN 235

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA  G+  + E  ++    G +  ++    K    L   E + L+
Sbjct: 236 ILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLV 286


>gi|301061949|ref|ZP_07202678.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
 gi|300443966|gb|EFK08002.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [delta proteobacterium NaphS2]
          Length = 611

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 163/441 (36%), Gaps = 86/441 (19%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------L 51
            F+  P E+ S LD +++ Q   K  +   +   + R +       E            +
Sbjct: 69  NFSMMPEEMASYLDGFVVKQDQVKAVLGTKICTHFNRIRFNDQKESESFSGADKKSGVGM 128

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +  N+L++GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE +IRDLV  A 
Sbjct: 129 IKNNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDLVYEA- 187

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
                       +++   AE  I+  +      S++R +                 +V+ 
Sbjct: 188 ------------DESIELAENGIV-YIDEIDKISSSRNLIGH--------------DVSR 220

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T    +         V +    +  S++      ++     +K                 
Sbjct: 221 TGVQRALLKPMEETDVDLKVPHDPISQIQAIEHYRRTGKKEKK----------------- 263

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V+  +I  + +     L E   I  R    GIG   +         V  + +  +    
Sbjct: 264 VVNTKNILFIMSGAFGDLAEI--IKKRLQRQGIGFEAD---------VRPTEIPWEILKE 312

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
                L                 E  GR PV V    LN+ D   IL +  + +I+  + 
Sbjct: 313 VRAQDLVEFG----------FESEFVGRLPVVVVFDMLNREDLFEILKNPNNPIIISKRM 362

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
             +  GI + F +D++  +A +A N  +     GAR L + +E+VL          + K 
Sbjct: 363 DFRAYGIDIKFEDDALRQIAALAENEKT-----GARGLVSAIEKVLVPFETRLPSTEIKR 417

Query: 412 VVIDAEYVR---LHIGDFPSE 429
            ++  E V      + +   +
Sbjct: 418 FLVTPEVVDNPEQQLSELLEK 438


>gi|224532149|ref|ZP_03672781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           valaisiana VS116]
 gi|224511614|gb|EEF82020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           valaisiana VS116]
          Length = 430

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 92  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 145 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 203 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 262

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 263 SSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLMRILVD 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++++ QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 323 PQNSIVKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 377

Query: 401 SFSASDLQ-EKTVVIDAEYV 419
            F    +   K VV+  E V
Sbjct: 378 MFEVPSISRTKKVVVTKESV 397



 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 183 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 240

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + ++++       D S + ++M+ + +
Sbjct: 241 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRE-------DTSLKYLEMEDLIK 291


>gi|110769975|ref|XP_001122528.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
           [Apis mellifera]
          Length = 361

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 39  SSTELQKSNIALIGPTGSGKTYLAQTLARILDVPFAIADATTLTEAG-YVGEDVENILLK 97

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 98  LLQNADYDIERAE-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 156

Query: 286 TKYG---------SINTDHILFIASGAF----------------------HVSRPAD--- 311
            + G          INT +ILFI  GAF                       +++  D   
Sbjct: 157 PQGGRKHPQQELIQINTTNILFIVGGAFDGIEQIVKSRLGKKVIGFSAENELNKVQDDSW 216

Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE  GR P+   L  L+++D   ILT+ ++ L+ QYK+LM  + +
Sbjct: 217 TKHLTTGDLVKFGLIPEFIGRIPIIATLDKLDRNDLVRILTEPKNALVKQYKKLMSLDQV 276

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L+FT D++ A+AD+A++ N     +GAR L+T++E  +  I +      + + V +  +
Sbjct: 277 NLEFTPDALKAIADLAIDRN-----MGARGLRTIIENAMMGIMYKTPSEPDIENVKVTKD 331

Query: 418 YVRLH 422
            +  +
Sbjct: 332 VIEKN 336



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 11/284 (3%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKTAI 69
           EI  +LD+Y+IGQ+ AK+ +++A+ N ++R  Q+  D   EL   NI L+GPTG GKT +
Sbjct: 2   EIKKQLDQYVIGQERAKKILSVAVYNHYKRVTQMDVDSSTELQKSNIALIGPTGSGKTYL 61

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVRE 124
           ++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  + R     DE+ +
Sbjct: 62  AQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIERAERGIIYIDEIDK 121

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
            +  +    I   + G+    +  ++    +            +      + +N     G
Sbjct: 122 ISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQELIQINTTNILFIVG 181

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            +   +        V     KK I  S +    ++  D   + +    + +  +      
Sbjct: 182 GAFDGIEQI-----VKSRLGKKVIGFSAENELNKVQDDSWTKHLTTGDLVKFGLIPEFIG 236

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            I  +   DK+   D    +   +  + +    L+    V+ ++
Sbjct: 237 RIPIIATLDKLDRNDLVRILTEPKNALVKQYKKLMSLDQVNLEF 280


>gi|299143347|ref|ZP_07036427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298517832|gb|EFI41571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 405

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 141/319 (44%), Gaps = 64/319 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +    S +  +IE+  +     N  + G    G   L++  ++++          ++
Sbjct: 87  NHYKRINSSIRNPEIELQKS-----NILMIGPTGSGKTLLAQTLARILNVPFAIADATTL 141

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREG 270
            +    +  D  + ++ +       I+  E  GI+++DE DKI  +     I   VS EG
Sbjct: 142 TEAG-YVGEDVENIILKLIQAADYDIEKAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 199

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------HVSRPA 310
           VQ+ LL ++EG+  +            ++  I+T +ILFI  GAF          + + +
Sbjct: 200 VQQALLKIIEGTVANVPPQGGRKHPNQEFIQIDTTNILFIVGGAFDGLDKIIESRIGKTS 259

Query: 311 -----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                                         L+PE+ GR P+ V L+SL+++    ILT  
Sbjct: 260 MGFGSELVDKKKQRENILDKIETGDLLKFGLIPELIGRLPLTVTLESLDEAALVEILTKP 319

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           ++ L+ QYKEL+K + + L+F  +++  +A +A++  +     GAR L+ V+E ++ DI 
Sbjct: 320 KNALVKQYKELLKLDNVELEFETNALKQIAKIAIDKKA-----GARGLRGVIEHIIMDIM 374

Query: 402 FSASDLQE-KTVVIDAEYV 419
           +     ++ + V++  + V
Sbjct: 375 YEIPSRKDVEKVIVTKDSV 393



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 7/227 (3%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67
           P EI S LD Y+I Q  AK+A+A+A+ N ++R      +   EL   NIL++GPTG GKT
Sbjct: 60  PEEIKSVLDSYVIKQDKAKKALAVAVYNHYKRINSSIRNPEIELQKSNILMIGPTGSGKT 119

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ LAR+   PF   + T  TE GYVG +VE II  L+  A   + ++ +     DE+
Sbjct: 120 LLAQTLARILNVPFAIADATTLTEAGYVGEDVENIILKLIQAADYDIEKAEKGIIYIDEI 179

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +                 D +N   I
Sbjct: 180 DKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQIDTTNILFI 239

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            GGA  G+  + E        G   ++    ++    L + E+  L+
Sbjct: 240 VGGAFDGLDKIIESRIGKTSMGFGSELVDKKKQRENILDKIETGDLL 286


>gi|116491694|ref|YP_811238.1| ATP-dependent protease ATP-binding subunit [Oenococcus oeni PSU-1]
 gi|116092419|gb|ABJ57573.1| ATP-dependent protease Clp, ATPase subunit [Oenococcus oeni PSU-1]
          Length = 421

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 122/302 (40%), Gaps = 65/302 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +        E+  L     + + 
Sbjct: 114 SNILLIGPTGSGKTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVL----KLLQA 169

Query: 237 SIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
           +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S       
Sbjct: 170 ADFDVEKAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGR 229

Query: 287 -----KYGSINTDHILFIASGAF-------------------HVSRPA------------ 310
                +Y  ++T +ILFI  GAF                   H  +              
Sbjct: 230 KHPQQEYIQVDTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQ 289

Query: 311 ---------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ LD
Sbjct: 290 FTDQDVIKFGLIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLD 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           F   ++  +A +A++  S     GAR L+++ME  +++  +      +   V++    V 
Sbjct: 350 FDPKALKEMAKIAIDKKS-----GARGLRSIMESTMKETMYEIPSKPDVAKVLVTKAAVD 404

Query: 421 LH 422
             
Sbjct: 405 GK 406



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 16/268 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R           EL   NILL+GPTG G
Sbjct: 66  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R     D
Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYID 185

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+    +  ++    +            +      D SN  
Sbjct: 186 EIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQVDTSNIL 245

Query: 180 DIPGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTV 233
            I GGA  GI +     L E         +++K + + +    +    +  +  +  + +
Sbjct: 246 FIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQFTDQDVIKFGLIPEFL 305

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            R  I  + N   ++ D+  KI+ +   
Sbjct: 306 GRLPIISILNP--LYEDDLVKILTKPKN 331


>gi|225548962|ref|ZP_03769939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 94a]
 gi|225370565|gb|EEH00002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           burgdorferi 94a]
          Length = 430

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 92  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 145 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF----HVSR----- 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF    ++ +     
Sbjct: 203 EGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 262

Query: 309 ----------------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                          L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 263 SFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLLRILVD 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++++ QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 323 PQNSIVKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 377

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K VV+  E V
Sbjct: 378 MFEVPSISKAKKVVVTKESV 397



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 25/241 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD Y++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 183 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEINTQN-- 240

Query: 176 ISNFDIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                I GGA VG+ N+     +K        + +         +  D S + ++M+ + 
Sbjct: 241 --ILFICGGAFVGLENIVKNRINKSFIGFSAIEKK--------NIREDTSLKYLEMEDLI 290

Query: 235 R 235
           +
Sbjct: 291 K 291


>gi|61211447|sp|Q660R1|CLPX_BORGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 430

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 92  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 145 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 203 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 262

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 263 SSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLMRILVD 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++++I QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 323 PQNSIIKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 377

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K V++  E V
Sbjct: 378 MFEVPSISKTKKVIVTKESV 397



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 183 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 240

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + ++++       D S + ++M+ + +
Sbjct: 241 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRE-------DTSLKYLEMEDLIK 291


>gi|293189654|ref|ZP_06608371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
 gi|292821392|gb|EFF80334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
          Length = 419

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 58/295 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L+   ++++          ++ +    +  D  + L+ +      
Sbjct: 113 SNILLLGPTGTGKTHLARCLARLLDVPFAIVDATALTEAG-YVGEDVENILLRLIQEADG 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 172 DIKKAEK-GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T  ILFIA+GAF          + R +                        
Sbjct: 231 PHQQFLEIDTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAED 290

Query: 311 ----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GR P+    K L + D   +LT+  ++L+ QY+ L + + + L+FT ++
Sbjct: 291 LHKFGMIPEFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMDLEFTHEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A    +     GAR L ++ME+ L D+ F      +   VVI  + V 
Sbjct: 351 LLAIAARANERKT-----GARGLSSIMEQTLSDLMFDLPSRDDVARVVITRDLVE 400



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGV 64
            PREI   L+ ++IGQ  AKRA+++A+ N ++R +       E M     NILL+GPTG 
Sbjct: 64  KPREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREVGNAEDMLGTKSNILLLGPTGT 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +     
Sbjct: 124 GKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEKGIIYV 183

Query: 120 ---DEVREQASINAEER 133
              D++  +A   +  R
Sbjct: 184 DEIDKIGRKAENASITR 200


>gi|305665190|ref|YP_003861477.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
 gi|88709942|gb|EAR02174.1| ATP-dependent protease ATP-binding subunit [Maribacter sp.
           HTCC2170]
          Length = 411

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)

Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
           R  +   KE D+E+  +     N  + G    G   +++  ++++           + + 
Sbjct: 93  RLLQPHSKEDDVEIQKS-----NIIMVGQTGTGKTLMAKTIARMLNVPLAIVDATVLTEA 147

Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQR 273
              +  D    L  +      +++  E  GIVF+DE DKI  +     I   VS EGVQ+
Sbjct: 148 G-YVGEDVESILTRLLQAADYNLEKAE-RGIVFIDEIDKIARKSDNPSITRDVSGEGVQQ 205

Query: 274 DLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH----------------- 305
            LL L+EG+ V+            K+  +NT++ILF+A GAF                  
Sbjct: 206 GLLKLLEGTVVNVPPKGGRKHPDQKFIEVNTENILFVAGGAFDGIERAITKRLNMQAVGY 265

Query: 306 ---------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                  +   L+PEI GR PV  H+  L+    R ILT+ ++ 
Sbjct: 266 SASKADESLDEDNILQYIIPKDLKEFGLIPEIIGRLPVLTHMNPLDAKTLRAILTEPKNA 325

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           +I QY++L   +GI    T+ ++D +   A+        +GAR L+++ E +  D  F  
Sbjct: 326 IIKQYEKLFAMDGISFTITDQALDYIVKKAIEYK-----LGARGLRSLCEAIFTDAMFEM 380

Query: 405 SDLQEKTVVIDAEYVRLHIG 424
               E    +   Y    I 
Sbjct: 381 PSTGETEFKVSKPYAENKIS 400



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
            P EI   LD +IIGQ+  K+ +++A+ N ++R   P    D  E+   NI++VG TG G
Sbjct: 61  KPLEIKEFLDTFIIGQERTKKVMSVAVYNHYKRLLQPHSKEDDVEIQKSNIIMVGQTGTG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           KT +++ +AR+   P   V+ T  TE GYVG +VE I+  L+  A   + ++ R  V
Sbjct: 121 KTLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAERGIV 177


>gi|290891315|ref|ZP_06554376.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
 gi|290478961|gb|EFD87624.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429]
          Length = 421

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 122/302 (40%), Gaps = 65/302 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +        E+  L     + + 
Sbjct: 114 SNILLIGPTGSGKTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVL----KLLQA 169

Query: 237 SIQMVE--NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST------ 286
           +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S       
Sbjct: 170 ADFDVEKAQRGIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGR 229

Query: 287 -----KYGSINTDHILFIASGAF-------------------HVSRPA------------ 310
                +Y  ++T +ILFI  GAF                   H  +              
Sbjct: 230 KHPQQEYIQVDTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFDKKNPLTQ 289

Query: 311 ---------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR P+   L  L + D   ILT  ++ L+ QYK L+  +G+ LD
Sbjct: 290 FTDQDVIKFGLIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLD 349

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           F   ++  +A +A++  S     GAR L+++ME  +++  +      +   V++    V 
Sbjct: 350 FDPKALKEMAKIAIDKKS-----GARGLRSIMESTMKETMYEIPSKPDVAKVLVTKAAVD 404

Query: 421 LH 422
             
Sbjct: 405 GK 406



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 16/268 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+ +A+A+ N ++R           EL   NILL+GPTG G
Sbjct: 66  TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R     D
Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYID 185

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+    +  ++    +            +      D SN  
Sbjct: 186 EIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQVDTSNIL 245

Query: 180 DIPGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTV 233
            I GGA  GI +     L E         +++K +   +    +    +  +  +  + +
Sbjct: 246 FIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFDKKNPLTQFTDQDVIKFGLIPEFL 305

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            R  I  + N   ++ D+  KI+ +   
Sbjct: 306 GRLPIISILNP--LYEDDLVKILTKPKN 331


>gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 427

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 127/350 (36%), Gaps = 74/350 (21%)

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDK---EIDIEVADTSSDISNFDIPGGASVG 188
           +R    L         R   RK  R          + D+E+  +     N  + G    G
Sbjct: 79  DRAKKVLSVAVYNHYKRVYSRKPARPQRPGQARAAQDDVELQKS-----NILLVGPTGSG 133

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTVHRDSIQMVENYG 245
              L++  ++ +          S+ +      ++     + L + D     +     + G
Sbjct: 134 KTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDVEKA-----SRG 188

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           IV++DE DKI  +         V  EGVQ+ LL ++EG+  +            +Y  ++
Sbjct: 189 IVYIDEIDKIARKGDTPSPTRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYIQVD 248

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T ++LFI  GAF                                      P DL     +
Sbjct: 249 TSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGDLVRFGMI 308

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L + D   ILT  ++ L  QY +L   E + L FT++S+ A A  
Sbjct: 309 PEFVGRLPIVATLSDLGEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKESLRATARE 368

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           A+   S     GAR L+ ++E+ + DI +     +  K   I    +   
Sbjct: 369 AMRRKS-----GARGLRAILEQAMLDIMYDVPYREGVKECKITEGVIVNR 413



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 13/128 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R             Q   A    EL   
Sbjct: 63  TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPQRPGQARAAQDDVELQKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILLVGPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A   V
Sbjct: 123 NILLVGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 182

Query: 115 RESRRDEV 122
            ++ R  V
Sbjct: 183 EKASRGIV 190


>gi|297739450|emb|CBI29632.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 65/248 (26%)

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK--- 287
           V   +++  +  GIV++DE DKI  +      G  VS EGVQ+ LL ++EG+ V+     
Sbjct: 246 VAEFNVEAAQQ-GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKG 304

Query: 288 --------YGSINTDHILFIASGAF----------------------------------- 304
                      I+T  ILFI  GAF                                   
Sbjct: 305 GRKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAV 364

Query: 305 ------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                       DL+     PE  GRFP+ V L +LN+     +LT+ ++ L  QYK+++
Sbjct: 365 VTSSLLESVESGDLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKML 424

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
               + L FTE+++  +A  A+  N+     GAR L+ ++E++L +  F   D++  T +
Sbjct: 425 SMNNVKLHFTENALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDM 479

Query: 414 IDAEYVRL 421
           +DA  V  
Sbjct: 480 VDAVLVDE 487



 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 22/146 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD ++IGQ+ AK+ +++A+ N ++R    +                  +   
Sbjct: 127 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 186

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LL+GPTG GKT +++ LAR+   PF+  + T  T+  YVG +VE I+  L+ V
Sbjct: 187 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQASYVGEDVESILHKLLMV 246

Query: 110 AINIVRESRRDEVR----EQASINAE 131
           A   V  +++  V     ++ +  AE
Sbjct: 247 AEFNVEAAQQGIVYIDEVDKITKKAE 272


>gi|197122724|ref|YP_002134675.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|220917507|ref|YP_002492811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172573|gb|ACG73546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. K]
 gi|219955361|gb|ACL65745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 427

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDK---EIDIEVADTSSDISNFDIPGGASVG 188
           +R    L         R   RK  R          + D+E+  +     N  + G    G
Sbjct: 79  DRAKKVLSVAVYNHYKRVYSRKPARPARPGQARAAQDDVELQKS-----NILLIGPTGSG 133

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTVHRDSIQMVENYG 245
              L++  ++ +          S+ +      ++     + L + D     +     + G
Sbjct: 134 KTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDVEKA-----SRG 188

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           IV++DE DKI  +         V  EGVQ+ LL ++EG+  +            +Y  ++
Sbjct: 189 IVYVDEIDKIARKGDTPSPTRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYIQVD 248

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T ++LFI  GAF                                      P DL     +
Sbjct: 249 TSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGDLVRFGMI 308

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+   L  L++ D   ILT  ++ L  QY +L   E + L FT++S+ A A  
Sbjct: 309 PEFVGRLPIIATLSDLSEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKESLRATARE 368

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
           A+   S     GAR L+ ++E+ + DI +     +  K   I    +   
Sbjct: 369 AMRRKS-----GARGLRAILEQAMLDIMYDVPYREGVKECKITEGVIVNR 413



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 13/128 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPK 54
           +P EI S LD Y++GQ  AK+ +++A+ N ++R             Q   A    EL   
Sbjct: 63  TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPARPGQARAAQDDVELQKS 122

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR    PF   + T  TE GYVG +VE II++L+  A   V
Sbjct: 123 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNADYDV 182

Query: 115 RESRRDEV 122
            ++ R  V
Sbjct: 183 EKASRGIV 190


>gi|254458150|ref|ZP_05071576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
 gi|207084986|gb|EDZ62272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Campylobacterales bacterium GD 1]
          Length = 414

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 57/305 (18%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I   DT    SN  + G    G   +++  ++V+          S+ +    +  D  +
Sbjct: 101 NITDDDTEIAKSNVLLIGPTGSGKTLMAQTIARVLNVPIAIADATSLTEAG-YVGEDVEN 159

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       ++  +  GIVF+DE DK+        I   VS EGVQ+ LL +VEG+ 
Sbjct: 160 ILTKLIQAADGDVERAQQ-GIVFIDEVDKVSRMSENRSITRDVSGEGVQQALLKIVEGAE 218

Query: 284 VST-----------KYGSINTDHILFIASGA----------------------------- 303
           V+            ++ SI+T +ILFI  GA                             
Sbjct: 219 VNIPPKGGRKHPNQEFTSIDTTNILFICGGAFDGLDEILKRKQGNNVLGFGHDKKSKDEQ 278

Query: 304 ---FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
              + +  P DL     +PE+ GR P+   L  +++ D   ILT+ +++LI QYK+L   
Sbjct: 279 KITYDMVEPDDLVSYGLIPELVGRLPIIASLNEISEEDMVRILTEPKNSLIKQYKKLFSI 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           + + L+F ED++ A     +   +     GAR L+ ++E  + DI +   +     V+I 
Sbjct: 339 DDVELNFEEDALKA-----IAAKAIKRKTGARGLRAILEENMIDIMYELPEYAGYEVLIT 393

Query: 416 AEYVR 420
            E + 
Sbjct: 394 PEVIN 398



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63
            +P+E+ + L  YIIGQ+ A++ +++A+ N ++R     ++ D   E+   N+LL+GPTG
Sbjct: 62  MTPKELNNFLGDYIIGQERARKLLSVAVYNHYKRIFKTKNITDDDTEIAKSNVLLIGPTG 121

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV- 122
            GKT +++ +AR+   P    + T  TE GYVG +VE I+  L+  A   V  +++  V 
Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAADGDVERAQQGIVF 181

Query: 123 ---REQASINAEER-ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
               ++ S  +E R I   + G+       ++      +              TS D +N
Sbjct: 182 IDEVDKVSRMSENRSITRDVSGEGVQQALLKIVEGAEVNIPPKGGRKHPNQEFTSIDTTN 241

Query: 179 FDIPGGASVGILN---LSELFSKVMGSGRKKKIR 209
                G +   L+     +  + V+G G  KK +
Sbjct: 242 ILFICGGAFDGLDEILKRKQGNNVLGFGHDKKSK 275


>gi|51598864|ref|YP_073052.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia garinii
           PBi]
 gi|51573435|gb|AAU07460.1| ATP-dependent Clp protease, subunit X [Borrelia garinii PBi]
          Length = 435

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 97  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 149

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 150 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 207

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 208 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 267

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 268 SSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLMRILVD 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++++I QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 328 PQNSIIKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 382

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K V++  E V
Sbjct: 383 MFEVPSISKTKKVIVTKESV 402



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 188 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 245

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + ++++       D S + ++M+ + +
Sbjct: 246 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRE-------DTSLKYLEMEDLIK 296


>gi|154509332|ref|ZP_02044974.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798966|gb|EDN81386.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
          Length = 419

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 58/295 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +L+   ++++          ++ +    +  D  + L+ +      
Sbjct: 113 SNILLLGPTGTGKTHLARCLARLLDVPFAIVDATALTEAG-YVGEDVENILLRLIQEADG 171

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S         
Sbjct: 172 DIKKAEK-GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKH 230

Query: 287 ---KYGSINTDHILFIASGAF---------HVSRPA------------------------ 310
              ++  I+T  ILFIA+GAF          + R +                        
Sbjct: 231 PHQQFLEIDTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAED 290

Query: 311 ----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                ++PE  GR P+    K L + D   +LT+  ++L+ QY+ L + + + L+FT ++
Sbjct: 291 LHKFGMIPEFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMELEFTHEA 350

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           + A+A  A    +     GAR L ++ME+ L D+ F      +   VV+  + V 
Sbjct: 351 LLAIAARANERKT-----GARGLSSIMEQTLSDLMFDLPSRDDVARVVVTRDLVE 400



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGV 64
            PREI   L+ ++IGQ  AKRA+++A+ N ++R +       E M     NILL+GPTG 
Sbjct: 64  KPREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREAGNAEDMLGTKSNILLLGPTGT 123

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT ++R LARL   PF  V+ T  TE GYVG +VE I+  L+  A   ++++ +     
Sbjct: 124 GKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEKGIIYV 183

Query: 120 ---DEVREQASINAEER 133
              D++  +A   +  R
Sbjct: 184 DEIDKIGRKAENASITR 200


>gi|227538075|ref|ZP_03968124.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300772704|ref|ZP_07082574.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242151|gb|EEI92166.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300761007|gb|EFK57833.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 416

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 129/326 (39%), Gaps = 73/326 (22%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           + ++   +I+IE        SN  I G    G   L++  +K++           + +  
Sbjct: 98  NQKVDKDDIEIEK-------SNLIIVGETGTGKTLLAKTVAKILNVPFSIVDATVLTEAG 150

Query: 217 PELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQ 272
                 ES   RL+        + +     GI+++DE DKI  +     I   VS EGVQ
Sbjct: 151 YVGEDVESILTRLLQAADYDVAAAER----GIIYIDEIDKIARKSDNPSITRDVSGEGVQ 206

Query: 273 RDLLPLVEGSSVST-----------KYGSINTDHILFIASGA------------------ 303
           + LL ++EG+ V+            K  ++NT +ILFI  GA                  
Sbjct: 207 QALLKILEGTVVNVPPQGGRKHPDQKMIAVNTSNILFICGGAFDGIQKKIANRLRTQTVG 266

Query: 304 --------------------FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                                   +   L+PE+ GR PV  +L  L+K     ILT+ ++
Sbjct: 267 YKMREDEQEIDLNNLYKYITPQDLKTFGLIPELIGRLPVLTYLNPLDKETLLSILTEPKN 326

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            LI QYK+L   EGI L+F ++    + D A         +GAR L+ + E ++ D  F 
Sbjct: 327 ALIKQYKKLFNYEGIELEFDKNVYQFIVDKADEFK-----LGARGLRAICEAIMLDAMFE 381

Query: 404 AS----DLQEKTVVIDAEYVRLHIGD 425
                 D+ + T+ I  +Y +     
Sbjct: 382 IPTSREDITDNTLHITLDYAKQKFEK 407



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 14/255 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQ DAK+ +++A+ N ++R     D  D E+   N+++VG TG GKT
Sbjct: 65  PLEIKQHLDQYVIGQDDAKKVISVAVYNHYKRLNQKVDKDDIEIEKSNLIIVGETGTGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ +A++   PF  V+ T  TE GYVG +VE I+  L+  A   V  + R     DE+
Sbjct: 125 LLAKTVAKILNVPFSIVDATVLTEAGYVGEDVESILTRLLQAADYDVAAAERGIIYIDEI 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
            + A  +    I   + G+       ++    + +          +    + + SN    
Sbjct: 185 DKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAVNTSNILFI 244

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI---Q 239
            G +   +       K+    R + +   +++   E+  +   + I    +    +    
Sbjct: 245 CGGAFDGIQK-----KIANRLRTQTVGYKMREDEQEIDLNNLYKYITPQDLKTFGLIPEL 299

Query: 240 MVENYGIVFLDEFDK 254
           +     + +L+  DK
Sbjct: 300 IGRLPVLTYLNPLDK 314


>gi|323466767|gb|ADX70454.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus
           H10]
          Length = 424

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 132/305 (43%), Gaps = 59/305 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           + T    SN  + G    G   L++  ++++          ++ +    +  D  + L+ 
Sbjct: 103 SSTELQKSNIAMIGPTGSGKTYLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLK 161

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVS 285
           +       ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV 
Sbjct: 162 LLQNADYDLERAQ-RGIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVP 220

Query: 286 TKYG---------SINTDHILFIASGAFHVSR---------------------------- 308
            + G          I+T +ILFI  GAF                                
Sbjct: 221 PQGGRKHPQQEMIKIDTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDW 280

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GR P+   L  L+  D   +LT+ ++ L+ QYK+L+  +GI
Sbjct: 281 TRHLTTADLVKFGMIPEFIGRIPIITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGI 340

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417
            L FT+ ++ A+AD+A+  N     +GAR L+T++E  + DI +     ++ + V +  +
Sbjct: 341 DLKFTDGALKAIADLAIQRN-----MGARGLRTIIENSIMDIMYKTPSEKDIEAVEVTKD 395

Query: 418 YVRLH 422
            +  H
Sbjct: 396 VIIRH 400



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 13/288 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGK 66
            P EI  +LD+Y+I Q  AK+ +++A+ N ++R  Q+  D   EL   NI ++GPTG GK
Sbjct: 63  KPMEIKKQLDQYVISQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     DE
Sbjct: 123 TYLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-D 180
           + + +  +    I   + G+    +  ++    +            +      D +N   
Sbjct: 183 IDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKIDTTNILF 242

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I GGA  GI  +      V     KK I    +    ++  D+  R +    + +  +  
Sbjct: 243 IVGGAFDGIEQI------VKNRLGKKTIGFGAENDVDKIDADDWTRHLTTADLVKFGMIP 296

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                I  +   DK+ + D    +   +  + +    L+    +  K+
Sbjct: 297 EFIGRIPIITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGIDLKF 344


>gi|317487861|ref|ZP_07946453.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325830652|ref|ZP_08164073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           sp. HGA1]
 gi|316912987|gb|EFV34504.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA]
 gi|325487398|gb|EGC89840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella
           sp. HGA1]
          Length = 471

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 132/320 (41%), Gaps = 63/320 (19%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +D +V    S   N  + G    G   L++  ++ +          ++ +    +  D  
Sbjct: 146 VDGDVELAKS---NIMLLGPTGSGKTLLAQTLARTLRVPFAIADATTLTEAG-YVGEDVE 201

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS 282
           + L+ + T     I   E  GI+++DE DK+  +     I   VS EGVQ+ LL +VEG+
Sbjct: 202 NILLKLMTAADFDIPRAEI-GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGT 260

Query: 283 SVST-----------KYGSINTDHILFIASGAF---------HVSR-------------- 308
             S            +   I+T +ILFI  GAF          V +              
Sbjct: 261 EASVPPQGGRKHPQQELIHIDTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKK 320

Query: 309 -----------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P DL     +PE  GR PV   L  L++ D   ILT+ ++ L+ QY ++
Sbjct: 321 HAEAELLARVLPEDLNKYGMIPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKM 380

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
            + E  +L F  +++  +A  AV   +     GAR L+++ ERVL+D+ +   + +   T
Sbjct: 381 FEFEDSVLTFEPEALKVIAHEAVEHGT-----GARGLRSICERVLQDVMYDLPEQKGPST 435

Query: 412 VVIDAEYVRLHIGDFPSETD 431
           V I A  +          TD
Sbjct: 436 VTIRATDITGETKPDIEPTD 455



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 11/137 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64
           +P E+ +EL  +++GQ+ AKRA+++A+ N ++R  L AD  D   EL   NI+L+GPTG 
Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES------- 117
           GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  +       
Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAADFDIPRAEIGIIYI 225

Query: 118 -RRDEVREQASINAEER 133
              D+V  +A   +  R
Sbjct: 226 DEIDKVARKAENLSITR 242


>gi|170781896|ref|YP_001710228.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|189082488|sp|B0RAS4|CLPX_CLAMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169156464|emb|CAQ01612.1| ATP dependent Clp Protease ATP binding subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 426

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 63/305 (20%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +IE+A +     N  + G    G   L++  +K +          ++ +    +  D  +
Sbjct: 113 EIEIAKS-----NILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAG-YVGEDVEN 166

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 167 ILLKLIQAADYDVKRAET-GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTV 225

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  ++T ++LFI +GAF                            
Sbjct: 226 ASVPPQGGRKHPHQEFIQVDTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDLN 285

Query: 306 -----VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR PV   +  L++     ILT   + L+ QY+ + + 
Sbjct: 286 ADVFGEVLPEDLHKFGLIPEFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFEL 345

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           +G+ L+F + +++++AD+AV   +     GAR L+ ++E VL  I F    D +   VVI
Sbjct: 346 DGVELEFEQGALESIADLAVLRQT-----GARGLRAILEEVLGPIMFDIPSDDEVGRVVI 400

Query: 415 DAEYV 419
             E V
Sbjct: 401 TRESV 405



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 5   FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKN 55
           F+   P+EI   LD Y+IGQ+ AKRA+++A+ N ++R +  +            E+   N
Sbjct: 61  FDLPKPKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAKTVGDEIEIAKSN 120

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+
Sbjct: 121 ILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVK 180

Query: 116 ESR-----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            +       DEV + A       I   + G+       ++    +               
Sbjct: 181 RAETGIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 240

Query: 171 DTSSDISN 178
               D +N
Sbjct: 241 FIQVDTTN 248


>gi|219684284|ref|ZP_03539228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii PBr]
 gi|219672273|gb|EED29326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii PBr]
          Length = 435

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 97  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 149

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 150 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 207

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 208 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 267

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 268 SSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLMRILVD 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++++I QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 328 PQNSIIKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 382

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K V++  E V
Sbjct: 383 MFEVPSISKTKKVIVTKESV 402



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 188 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 245

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + ++++       D S + ++M+ + +
Sbjct: 246 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRE-------DTSLKYLEMEDLIK 296


>gi|256961587|ref|ZP_05565758.1| ClpX [Enterococcus faecalis Merz96]
 gi|256952083|gb|EEU68715.1| ClpX [Enterococcus faecalis Merz96]
          Length = 417

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 53  EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 112

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 113 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 166

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 167 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 225

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 226 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGKKTIGFGKTNSALNEEESIMQH 285

Query: 309 --PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DLL     PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+
Sbjct: 286 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLE 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 346 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 396



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 17/299 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 57  ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 116

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 117 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 176

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 177 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231
             D +N     G +   +         +   R  K  +   K    L  +ES  + I  +
Sbjct: 237 QIDTTNVLFIVGGAFDGIE-------TIVKNRLGKKTIGFGKTNSALNEEESIMQHIIPE 289

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            + +  +       +  +   DK+   D    +   +  + +    L+       ++  
Sbjct: 290 DLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEP 348


>gi|111115441|ref|YP_710059.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia afzelii
           PKo]
 gi|216263331|ref|ZP_03435326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           afzelii ACA-1]
 gi|110890715|gb|ABH01883.1| ATP-dependent Clp protease, subunit X [Borrelia afzelii PKo]
 gi|215980175|gb|EEC20996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           afzelii ACA-1]
          Length = 430

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 92  HYKRILKNNKYDDGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 145 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 203 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 262

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ L+K D   IL D
Sbjct: 263 SSIGFSAIEKKNIRDDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLSKEDLIKILVD 322

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            +++++ QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 323 PQNSIVKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 377

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K V++  E V
Sbjct: 378 MFEVPSISKTKKVIVTKESV 397



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        D  E+   NILLVGPTG G
Sbjct: 63  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 183 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 240

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + +++        D S + ++M+ + +
Sbjct: 241 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRD-------DTSLKYLEMEDLIK 291


>gi|87301612|ref|ZP_01084452.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           5701]
 gi|87283829|gb|EAQ75783.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH
           5701]
          Length = 446

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 67/319 (21%)

Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           D + + + + T    SN  + G    G   L++  ++++          ++ +       
Sbjct: 119 DGKGETDRSATRLHKSNILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGED 178

Query: 222 DESDRLIDMDTVHRDSIQMVEN--YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            E+  L     + + +   VE    GI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 179 VENILL----RLLQKADLDVEQAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 234

Query: 278 LVEGSSVSTK-----------YGSINTDHILFIASGAF---------------------- 304
           ++EG+  +                I+T  ILFI  GAF                      
Sbjct: 235 MLEGTVANVPPQGGRKHPYQDCIQIDTSQILFICGGAFVGLEEVVQRRLGRNSIGFLPAD 294

Query: 305 ------------HVSR---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                       HV R   P DL     +PE  GR PV   L+ L+      ILT+    
Sbjct: 295 GRGRGHRELKASHVLRHLEPDDLVRYGLIPEFTGRLPVSAVLEPLDVRSLESILTEPRDA 354

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ Q++ LM  + + L+F   +I+A+A  A    +     GAR L+ ++E ++ D+ +  
Sbjct: 355 LVKQFQTLMSMDSVRLEFEPGAIEAIAHEAHRRRT-----GARALRGIVEELMLDLMYDL 409

Query: 405 SDLQE-KTVVIDAEYVRLH 422
               E  +  I  E V   
Sbjct: 410 PSNNEVSSFTITRELVEQR 428


>gi|29376445|ref|NP_815599.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus
           faecalis V583]
 gi|255972438|ref|ZP_05423024.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T1]
 gi|255975538|ref|ZP_05426124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T2]
 gi|256619398|ref|ZP_05476244.1| ClpX [Enterococcus faecalis ATCC 4200]
 gi|256762854|ref|ZP_05503434.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T3]
 gi|256853438|ref|ZP_05558808.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           T8]
 gi|256959236|ref|ZP_05563407.1| ClpX [Enterococcus faecalis DS5]
 gi|256964803|ref|ZP_05568974.1| ClpX [Enterococcus faecalis HIP11704]
 gi|257079304|ref|ZP_05573665.1| ClpX [Enterococcus faecalis JH1]
 gi|257082257|ref|ZP_05576618.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|257084874|ref|ZP_05579235.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|257087129|ref|ZP_05581490.1| ClpX [Enterococcus faecalis D6]
 gi|257090206|ref|ZP_05584567.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           CH188]
 gi|257416359|ref|ZP_05593353.1| ClpX [Enterococcus faecalis AR01/DG]
 gi|257419607|ref|ZP_05596601.1| ATP-dependent protease ClpX [Enterococcus faecalis T11]
 gi|257422287|ref|ZP_05599277.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           X98]
 gi|294779794|ref|ZP_06745181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis PC1.1]
 gi|300861010|ref|ZP_07107097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TUSoD Ef11]
 gi|46576517|sp|Q833M7|CLPX_ENTFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29343909|gb|AAO81669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis V583]
 gi|255963456|gb|EET95932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T1]
 gi|255968410|gb|EET99032.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T2]
 gi|256598925|gb|EEU18101.1| ClpX [Enterococcus faecalis ATCC 4200]
 gi|256684105|gb|EEU23800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus
           faecalis T3]
 gi|256711897|gb|EEU26935.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           T8]
 gi|256949732|gb|EEU66364.1| ClpX [Enterococcus faecalis DS5]
 gi|256955299|gb|EEU71931.1| ClpX [Enterococcus faecalis HIP11704]
 gi|256987334|gb|EEU74636.1| ClpX [Enterococcus faecalis JH1]
 gi|256990287|gb|EEU77589.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           E1Sol]
 gi|256992904|gb|EEU80206.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           Fly1]
 gi|256995159|gb|EEU82461.1| ClpX [Enterococcus faecalis D6]
 gi|256999018|gb|EEU85538.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           CH188]
 gi|257158187|gb|EEU88147.1| ClpX [Enterococcus faecalis ARO1/DG]
 gi|257161435|gb|EEU91395.1| ATP-dependent protease ClpX [Enterococcus faecalis T11]
 gi|257164111|gb|EEU94071.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis
           X98]
 gi|294453168|gb|EFG21583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis PC1.1]
 gi|295113200|emb|CBL31837.1| endopeptidase Clp ATP-binding regulatory subunit (clpX)
           [Enterococcus sp. 7L76]
 gi|300850049|gb|EFK77799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481059|gb|ADX80498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis 62]
 gi|327535434|gb|AEA94268.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis OG1RF]
          Length = 417

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 53  EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 112

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 113 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 166

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 167 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 225

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 226 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQH 285

Query: 309 --PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DLL     PE  GR PV   L  L   D   ILT+ ++ L+ QY++L+  +   L+
Sbjct: 286 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLE 345

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 346 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 396



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 57  ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 116

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 117 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 176

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 177 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236

Query: 173 SSDISNFDIPGGASVGILN 191
             D +N     G +   + 
Sbjct: 237 QIDTTNVLFIVGGAFDGIE 255


>gi|257452228|ref|ZP_05617527.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp.
           3_1_5R]
 gi|257465977|ref|ZP_05630288.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917133|ref|ZP_07913373.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058771|ref|ZP_07923256.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           3_1_5R]
 gi|313684447|gb|EFS21282.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp.
           3_1_5R]
 gi|313691008|gb|EFS27843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 423

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 162/374 (43%), Gaps = 62/374 (16%)

Query: 104 RDLVDVAINIVRESRRDEVR-EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162
            + +    + ++  + + ++ E+     ++ ++     K   +       K+L   E  +
Sbjct: 49  EEYLPATGDTIQIQQMEMLKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQE 108

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           K+   +  +     SN  + G    G   L++  ++++          ++ +    +  D
Sbjct: 109 KKKSKDNDEVELQKSNVLLIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAG-YVGDD 167

Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
             + L+ +      +I+  E  GI+++DEFDKI  +     I   VS EGVQ+ LL ++E
Sbjct: 168 VENVLVRLIQAADYNIENAEK-GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIE 226

Query: 281 GS--SVSTKYG---------SINTDHILFIASGAFH------------------------ 305
           G+   V  + G          I+T +ILFI  GAF                         
Sbjct: 227 GTLSQVPPEGGRKHPNQPLIEIDTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAP 286

Query: 306 -----------VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                         P D+     +PE+ GR P+  +L+ L++  F  ILT  ++ ++ QY
Sbjct: 287 KEQVGEGEFLSQVLPEDITKRGIIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQY 346

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQ 408
           ++L + EG+ L+FTE+++  +A +A++       IGAR L++++E  + ++ +    D  
Sbjct: 347 QKLFQMEGVELEFTEEALAEVAHLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSS 401

Query: 409 EKTVVIDAEYVRLH 422
            + V++  E V  H
Sbjct: 402 IQKVILGKEAVLDH 415



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 26/255 (10%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------ADLRDEL 51
           M++     P EI  +LD Y+IGQ+ AK+ +A+A+ N ++R              +   EL
Sbjct: 64  MEM---LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKSKDNDEVEL 120

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              N+LL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+  A 
Sbjct: 121 QKSNVLLIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAAD 180

Query: 112 NIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166
             +  + +     DE  + A  +    I   + G+       ++    L           
Sbjct: 181 YNIENAEKGIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKH 240

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI---RMSVQKCYPELMRDE 223
                   D SN     G +       E   KV+     KK       +Q    ++   E
Sbjct: 241 PNQPLIEIDTSNILFIVGGAF------EGLGKVIQGRLHKKTLGFGADIQAPKEQVGEGE 294

Query: 224 SDRLIDMDTVHRDSI 238
               +  + + +  I
Sbjct: 295 FLSQVLPEDITKRGI 309


>gi|318043032|ref|ZP_07974988.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp.
           CB0101]
          Length = 450

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 119/311 (38%), Gaps = 69/311 (22%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  ++++          ++ +        E+   RL+    + 
Sbjct: 135 SNILLIGPTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLD 194

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK----- 287
            D  Q     GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +       
Sbjct: 195 VDQAQR----GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGR 250

Query: 288 ------YGSINTDHILFIASGAF------------------------------------H 305
                    I+T  ILFI  GAF                                    H
Sbjct: 251 KHPYQDCIQIDTSQILFICGGAFVGLEDVVQRRMGRNSIGFIPEGGRSRSRQNKDQQAAH 310

Query: 306 VSR---PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
           V R   P DL     +PE  GR PV   L+ L+      ILT+    L+ Q++ L+  + 
Sbjct: 311 VLRHLEPDDLVKYGLIPEFIGRLPVSAVLEPLDSRALEAILTEPRDALVKQFQTLLSMDE 370

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + LDF   +++A+A  A    +     GAR L+ ++E ++ D+ +    D   K   +  
Sbjct: 371 VRLDFEPGAVEAIAAEAHRRKT-----GARALRGIVEELMLDLMYDLPSDKSTKAFTVTR 425

Query: 417 EYVRLHIGDFP 427
           E V        
Sbjct: 426 ELVEERTKAKV 436



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 19/240 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60
            PREI + LD  ++GQ++AK+ +++A+ N ++R     D + E       L   NILL+G
Sbjct: 82  KPREIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATRLHKSNILLIG 141

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR- 119
           PTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  A   V +++R 
Sbjct: 142 PTGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQRG 201

Query: 120 ----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ + A  +    I   + G+       ++    + +                 D
Sbjct: 202 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPYQDCIQID 261

Query: 176 ISNF-DIPGGASVGILNL------SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            S    I GGA VG+ ++            +   GR +  +   Q+    L   E D L+
Sbjct: 262 TSQILFICGGAFVGLEDVVQRRMGRNSIGFIPEGGRSRSRQNKDQQAAHVLRHLEPDDLV 321


>gi|148272647|ref|YP_001222208.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|166214771|sp|A5CR08|CLPX_CLAM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|147830577|emb|CAN01512.1| ATP-dependent protease, ATP-binding subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 426

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 63/305 (20%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +IE+A +     N  + G    G   L++  +K +          ++ +    +  D  +
Sbjct: 113 EIEIAKS-----NILLIGPTGCGKTYLAQTLAKRLNVPFAVADATALTEAG-YVGEDVEN 166

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L+ +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 167 ILLKLIQAADYDVKRAET-GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTV 225

Query: 284 VST-----------KYGSINTDHILFIASGAFH--------------------------- 305
            S            ++  ++T ++LFI +GAF                            
Sbjct: 226 ASVPPQGGRKHPHQEFIQVDTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDVN 285

Query: 306 -----VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                   P DL     +PE  GR PV   +  L++     ILT   + L+ QY+ + + 
Sbjct: 286 ADVFGEVLPEDLHKFGLIPEFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFEL 345

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           +G+ L+F + +++++AD+AV   +     GAR L+ ++E VL  I F    D +   VVI
Sbjct: 346 DGVELEFEQGALESIADLAVLRQT-----GARGLRAILEEVLGPIMFDIPSDDEVGRVVI 400

Query: 415 DAEYV 419
             E V
Sbjct: 401 TRESV 405



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 13/184 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59
            P+EI   LD Y+IGQ+ AKRA+++A+ N ++R +  +            E+   NILL+
Sbjct: 65  KPKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAETVGDEIEIAKSNILLI 124

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V+ +  
Sbjct: 125 GPTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKRAET 184

Query: 119 ----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DEV + A       I   + G+       ++    +                   
Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244

Query: 175 DISN 178
           D +N
Sbjct: 245 DTTN 248


>gi|182414556|ref|YP_001819622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus
           terrae PB90-1]
 gi|177841770|gb|ACB76022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus
           terrae PB90-1]
          Length = 431

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 130/308 (42%), Gaps = 66/308 (21%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           D+EV  +     N  + G    G   L+   ++++          ++ +        E+ 
Sbjct: 115 DVEVEKS-----NILLVGPTGSGKTLLARTLARILDVPFAISDATTLTEAGYVGEDVENV 169

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +   + D ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++
Sbjct: 170 VLRLLQNANYD-VKRAE-CGIIYIDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTT 227

Query: 284 VST-----------KYGSINTDHILFIASGAF------------HVS------------- 307
            +            +Y  INT +ILF+  GAF            H S             
Sbjct: 228 CNVPPQGGRKHPNQEYVQINTSNILFVCGGAFVGLDGIVQRRLGHRSLGFSSIQAQQDAA 287

Query: 308 ----------RPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                      P DL+     PE  GR PV   L  L+  D   +L  T++ ++ QY +L
Sbjct: 288 MKPEQMMKSIAPEDLIRFGMIPEFIGRLPVVSVLDELSVEDLEKVLLRTKNAMVKQYSKL 347

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-T 411
              +G+ L  T D+I A+A  A+ L +     GAR L++++E ++ ++ +      +   
Sbjct: 348 FAMDGVRLRLTTDAIHAIARKALELKT-----GARALRSILENLMLEVMYDLPQRDDVAE 402

Query: 412 VVIDAEYV 419
           V IDA  V
Sbjct: 403 VTIDAGVV 410



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 13/124 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRDELMPK 54
            P EI   LD ++IGQ  AK+ +++A+ N ++R                P     E+   
Sbjct: 62  KPSEIKKTLDDFVIGQDHAKKVLSVAVYNHYKRLMFDSGQPGKDSMALSPEFNDVEVEKS 121

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILLVGPTG GKT ++R LAR+   PF   + T  TE GYVG +VE ++  L+  A   V
Sbjct: 122 NILLVGPTGSGKTLLARTLARILDVPFAISDATTLTEAGYVGEDVENVVLRLLQNANYDV 181

Query: 115 RESR 118
           + + 
Sbjct: 182 KRAE 185


>gi|257459195|ref|ZP_05624314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           gracilis RM3268]
 gi|257443580|gb|EEV18704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter
           gracilis RM3268]
          Length = 412

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 152/378 (40%), Gaps = 74/378 (19%)

Query: 112 NIVRESRRDEVREQASINAEERIL------DALVGKTATSNTREVFRKKLRDGEISDKEI 165
           N  +E   + ++ +A +    R +        +      ++ + +FR+   D +  D EI
Sbjct: 52  NQNKEIDFEAIKPKALMEVLNRYVIGQERAKKIFSVGVYNHYKRIFRQT--DAKGDDTEI 109

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                      SN  + G    G   +++  +K +          S+ +    +  D  +
Sbjct: 110 ---------SKSNILLIGPTGSGKTLMAQTLAKFLDVPIAISDATSLTEAG-YVGEDVEN 159

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSS 283
            L  +       ++  +  GIVF+DE DKI        I   VS EGVQ+ LL ++EGS 
Sbjct: 160 ILTRLLQAADGDVEKAQ-RGIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSV 218

Query: 284 VSTK-----------YGSINTDHILFIASGAF---------------------------- 304
           V+             +  I+T +ILF+  GAF                            
Sbjct: 219 VNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEIINRRIGQNVLGFNQTKRSKKES 278

Query: 305 ----HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
               ++    DL     +PE+ GR  +   L  +++     ILT+ ++ ++ QY++L   
Sbjct: 279 LNLLNMVEADDLVHYGIIPELIGRLHIVATLNEIDEKAMVRILTEPKNAILKQYQKLFAI 338

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415
           +G  L F +D++  +A +A+   +     GAR L++++E ++ DI F   +L+   V+I 
Sbjct: 339 DGANLKFDDDALREVASLAIKRKT-----GARGLRSIIEEIMIDIMFDLPELKGYDVIIS 393

Query: 416 AEYVRLHIGDFPSETDMY 433
            E V         + ++ 
Sbjct: 394 KEVVDGVSKPILVKQNLT 411



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 17/257 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRDELMPKNILLVGPTGV 64
            P+ ++  L+RY+IGQ+ AK+  ++ + N ++R     D      E+   NILL+GPTG 
Sbjct: 63  KPKALMEVLNRYVIGQERAKKIFSVGVYNHYKRIFRQTDAKGDDTEISKSNILLIGPTGS 122

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119
           GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  A   V +++R     
Sbjct: 123 GKTLMAQTLAKFLDVPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVEKAQRGIVFV 182

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ + A ++    I   + G+       ++    + +                 D +N 
Sbjct: 183 DEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQIDTTNI 242

Query: 180 -DIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
             + GGA  G+  +    +   V+G  + K+ +   ++    L   E+D L+    +  +
Sbjct: 243 LFVCGGAFDGLNEIINRRIGQNVLGFNQTKRSK---KESLNLLNMVEADDLVHYG-IIPE 298

Query: 237 SIQMVENYGIVFLDEFD 253
            I  +  + +  L+E D
Sbjct: 299 LIGRL--HIVATLNEID 313


>gi|329572811|gb|EGG54439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus
           faecalis TX1467]
          Length = 468

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 71/356 (19%)

Query: 120 DEVREQASINAEERILDAL----VGKTATSNTREV----FRKKLRDGEISDKEIDIEVAD 171
           + VRE   +   + IL+ L    +G+     T  V      K++   E +  + D+E+  
Sbjct: 104 EAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQK 163

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           +     N  + G    G   L++  +K +          S+ +    +  D  + L+ + 
Sbjct: 164 S-----NICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAG-YVGEDVENILLKLL 217

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--- 286
                +++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S    
Sbjct: 218 QSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQ 276

Query: 287 --------KYGSINTDHILFIASGAFHVSR------------------------------ 308
                   ++  I+T ++LFI  GAF                                  
Sbjct: 277 GGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQH 336

Query: 309 --PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
             P DL     +PE  GR PV   L  L   D   ILT+ ++ L+ QY+ L+  +   L+
Sbjct: 337 IIPEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQNLLSLDDNKLE 396

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           F  +++ A+A  A+  N+     GAR L++++E ++ D+ F    D   + V+I  
Sbjct: 397 FEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVMFDVPSDESIEKVIITK 447



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDELMPKNIL 57
           +LT    P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R             EL   NI 
Sbjct: 108 ELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNIC 167

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+  A   V  +
Sbjct: 168 LIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERA 227

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
            +     DE+ + A  +    I   + G+       ++    +                 
Sbjct: 228 EKGIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 287

Query: 173 SSDISNFDIPGGASVGILN 191
             D +N     G +   + 
Sbjct: 288 QIDTTNVLFIVGGAFDGIE 306


>gi|313887830|ref|ZP_07821510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846173|gb|EFR33554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 59/296 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++          ++ +    +  D  + ++ +      
Sbjct: 107 SNILMIGPTGSGKTLLAQTLARLLNVPFAIADATTLTEAG-YVGEDVENIILKLIQNADY 165

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 166 DIERAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKH 224

Query: 287 ---KYGSINTDHILFIASGAFH---------------------VSRPA------------ 310
              ++  ++T +ILFI  GAF                      V + A            
Sbjct: 225 PSQEFIQVDTSNILFIVGGAFDGIDKIIENRTAKSSMGFGSEIVDKKAKQENILQKVETE 284

Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 L+PE+ GR PV + L+ L++     ILT  ++ L+ QYKEL+K + + L F ++
Sbjct: 285 DLLKFGLIPELIGRLPVTITLEELDEEALVEILTKPKNALVKQYKELLKFDDVDLIFDDE 344

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++ +A  A+   +     GAR L+ V+E  + ++ +      + K V I  E V 
Sbjct: 345 ALNYIARKAIEKKA-----GARGLRGVIENTIMNVMYEIPSRDDIKAVKITKESVE 395



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 8/229 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVG 65
            P EI   LD+Y++ Q+DAKRA+A+A+ N ++R           EL   NIL++GPTG G
Sbjct: 59  KPAEIKEILDQYVVKQEDAKRALAVAVYNHYKRISSTRTVSSDIELQKSNILMIGPTGSG 118

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LARL   PF   + T  TE GYVG +VE II  L+  A   +  + +     D
Sbjct: 119 KTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENIILKLIQNADYDIERAEKGIIYID 178

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    + +                 D SN  
Sbjct: 179 EIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPSQEFIQVDTSNIL 238

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            I GGA  GI  + E  +     G   +I     K    L + E++ L+
Sbjct: 239 FIVGGAFDGIDKIIENRTAKSSMGFGSEIVDKKAKQENILQKVETEDLL 287


>gi|319760382|ref|YP_004124320.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039096|gb|ADV33646.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 431

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 74/304 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++ +          ++ +              D++ V + 
Sbjct: 129 SNILLVGPTGSGKTLLAETLARFLEVPFAISDATTLTEA--------GYVGEDVENVIQK 180

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +   +        GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S   
Sbjct: 181 LLHRCDYNINKAQRGIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTIASIPP 240

Query: 287 ---------KYGSINTDHILFIASGAF--------------------------------- 304
                    ++  ++T +ILFI  G+F                                 
Sbjct: 241 KGGRKHPQQEFIKLDTTNILFICGGSFFGLNKIIEQRISEKRTIGFHTFPRMKVNKDFEY 300

Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
                  P DL+     PE  GRFP+   L  L + +   ILTD ++ LI QYK L   +
Sbjct: 301 ALLDKVEPEDLIKFGLIPEFIGRFPIISVLDELKEYELIKILTDPKNALIKQYKTLFNLD 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVID 415
            I L+F+E S++A+A  A+N  S     GAR L+T++E +L D  ++     + + VVI+
Sbjct: 361 KIELEFSEASLNAIAKYAINKQS-----GARGLRTILENILLDTMYNLPSQNKVRKVVIN 415

Query: 416 AEYV 419
           ++ V
Sbjct: 416 SQVV 419



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 23/245 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELM 52
           F+PR+I + LD YIIGQ+ AK+ +++A+ N ++R +      D              EL 
Sbjct: 68  FTPRDIGNYLDSYIIGQECAKKILSVAIYNHYKRLKYQNQKFDKNANKINDNYGGDIELF 127

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILLVGPTG GKT ++  LAR    PF   + T  TE GYVG +VE +I+ L+     
Sbjct: 128 KSNILLVGPTGSGKTLLAETLARFLEVPFAISDATTLTEAGYVGEDVENVIQKLLHRCDY 187

Query: 113 IVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            + +++R     DE+ + A  +    I   + G+       ++    +            
Sbjct: 188 NINKAQRGIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTIASIPPKGGRKHP 247

Query: 168 EVADTSSDISNF-DIPGGASVGILNLSEL-FSKVMGSGRKKKIRMSVQKCYP--ELMRDE 223
           +      D +N   I GG+  G+  + E   S+    G     RM V K +    L + E
Sbjct: 248 QQEFIKLDTTNILFICGGSFFGLNKIIEQRISEKRTIGFHTFPRMKVNKDFEYALLDKVE 307

Query: 224 SDRLI 228
            + LI
Sbjct: 308 PEDLI 312


>gi|219685275|ref|ZP_03540095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii Far04]
 gi|219673371|gb|EED30390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia
           garinii Far04]
          Length = 435

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 65/320 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++      D  I+IE        SN  + G    G   L++  +  M          
Sbjct: 97  HYKRILKNNKYDNGIEIEK-------SNILLVGPTGSGKTLLAKTLAAEMNVPFAIADAT 149

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       + + E  GI+++DE DKI  ++    I   VS 
Sbjct: 150 TLTEAG-YVGEDVENILLKLIHAAHGDVSLAEK-GIIYIDEIDKIAKKNENVSITRDVSG 207

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------HVSR 308
           EGVQ+ LL ++EG+  +                INT +ILFI  GAF          +++
Sbjct: 208 EGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQNILFICGGAFVGLENIVKNRINK 267

Query: 309 PA----------------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340
            +                             L+PE  GR PV  +L+ LNK D   IL D
Sbjct: 268 SSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIPEFVGRLPVHSYLEKLNKEDLMKILVD 327

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++++I QY  + K + + L F +D+++++ D A+  N+     GAR L++++E +L+D+
Sbjct: 328 PQNSIIKQYYHMFKMDNVELVFEKDALESIVDEAILKNT-----GARGLRSILEGLLKDV 382

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            F    + + K V++  E V
Sbjct: 383 MFEVPSISKTKKVIVTKESV 402



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+++   LD +++GQ+DAK+ +++A+ N ++R        +  E+   NILLVGPTG G
Sbjct: 68  TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA     PF   + T  TE GYVG +VE I+  L+  A   V  + +     D
Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAAHGDVSLAEKGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVADTSSD 175
           E+ + A  N    I   + G+       ++    +     R G     E  IE+   +  
Sbjct: 188 EIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEINTQN-- 245

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                I GGA VG+ N+ +        G     + ++++       D S + ++M+ + +
Sbjct: 246 --ILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRE-------DTSLKYLEMEDLIK 296


>gi|196019813|ref|XP_002119046.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens]
 gi|190577177|gb|EDV18468.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens]
          Length = 246

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 59/230 (25%)

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  S            ++  I
Sbjct: 1   GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLKLMEGTVASIPPQGGRKHPQQEFLQI 60

Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312
           NT +ILF+ SGAF                                   +   P DL    
Sbjct: 61  NTKNILFVCSGAFSGLDKIINQRKKDSSIGFEAIVKNKDEDSSVSNVINGVEPEDLVKYG 120

Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +PE  GR P+ V +  L++S    IL + +++LI QY++L     I L+F E++   +A
Sbjct: 121 LIPEFIGRLPLIVTINDLDESMLIRILKEPKNSLIQQYQKLFDLNDIKLNFEENAFKEIA 180

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
            +A    +     GAR L+ ++E +L D+ F  S+ +  K + I ++ ++
Sbjct: 181 KIAFKRKT-----GARGLRAILENILLDLMFDFSNKKNIKEITITSDVIK 225


>gi|257456333|ref|ZP_05621530.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           vincentii ATCC 35580]
 gi|257446419|gb|EEV21465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema
           vincentii ATCC 35580]
          Length = 414

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 64/282 (22%)

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY------GIVFLDEF 252
           ++     +K+++         + +      D++ +    IQ  +        GI+F+DE 
Sbjct: 124 LLARTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNADGDIARAERGIIFIDEI 183

Query: 253 DKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFI 299
           DKI  +     I   VS EGVQ+ LL +VEG+  SV  + G          I+T +ILFI
Sbjct: 184 DKIARKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQDMLKIDTSNILFI 243

Query: 300 ASGAF---------HVSR-------------------------PADL-----LPEIQGRF 320
             GAF          V+                          P DL     +PE+ GR 
Sbjct: 244 CGGAFVGLDTIIQTRVAENPMGFGADVRSAKEKNLQELYDKLIPDDLVKFGIIPELIGRL 303

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+ V L  L  +D R IL + ++ +I Q++E  K + + L F + ++DA++  A++ N+ 
Sbjct: 304 PISVPLSDLKLADLRRILVEPKNAIIKQFQESFKLDNVKLTFDDAALDAISQQALDQNT- 362

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421
               GAR L++++E+++ D  F A  ++  K + I  + +  
Sbjct: 363 ----GARGLRSIVEKLMLDAMFEAPSMKGQKELHITKKVIEE 400



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 10/234 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P E+ + LD Y+IGQ+ AKR +++A+ N ++R   P   R+   +   N+LL+GPTG G
Sbjct: 62  TPMELKAYLDEYVIGQEKAKRVLSVAVYNHYKRIMHPPADRNAVVIEKSNVLLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT ++R LA+    PF   + T  TE GYVG +VE I+  L+  A   +  + R     D
Sbjct: 122 KTLLARTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNADGDIARAERGIIFID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ + A  +    I   + G+       ++    +                   D SN  
Sbjct: 182 EIDKIARKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQDMLKIDTSNIL 241

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
              G +   L   +   +   +         V+    + +++  D+LI  D V 
Sbjct: 242 FICGGAFVGL---DTIIQTRVAENPMGFGADVRSAKEKNLQELYDKLIPDDLVK 292


>gi|51473872|ref|YP_067629.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str.
           Wilmington]
 gi|61211460|sp|Q68W45|CLPX_RICTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51460184|gb|AAU04147.1| ATP-dependent Clp protease ATP and substrate binding subunit ClpX
           [Rickettsia typhi str. Wilmington]
          Length = 425

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 135/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLISAEFNIAKAQK-GIIYIDEVDKIARKSDNPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDRIIRSRTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L+ L+K     IL
Sbjct: 262 SSIGFAANINIDKEKNNNEVLKSLEIEDLTKFGLIPEFIGRLPIVTTLEELDKESLITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIEYSALEAIAEKALVKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V +  E V   I    +
Sbjct: 377 DSMYKVAELKKQRVTLTKEVVDGLIEPVMT 406



 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 16/258 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I   L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICKILNDYVVGQDKAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I GGA +GI  +    +     G    I +  +K       +E  + ++++ + +  + 
Sbjct: 242 FICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEK-----NNNEVLKSLEIEDLTKFGLI 296

Query: 240 MVENYG---IVFLDEFDK 254
                    +  L+E DK
Sbjct: 297 PEFIGRLPIVTTLEELDK 314


>gi|149177956|ref|ZP_01856553.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148843149|gb|EDL57515.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 428

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 135/334 (40%), Gaps = 66/334 (19%)

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
               ++V    + +        + E +D   D SN  + G    G   L++  ++ +   
Sbjct: 90  QERAKKVMAVAVHNHYKRLMHSEEEGSDVELDKSNILLIGPTGSGKTLLAKSLARYLQVP 149

Query: 204 RKKKIRMSVQKCYPELMRDESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
                  ++ +        E+   +L+       ++ Q     GI+F+DE DKI      
Sbjct: 150 FAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQR----GILFIDEIDKIGKTSQN 205

Query: 262 NGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---- 304
             I   VS EGVQ+ LL ++EG+  +            +Y  ++T +ILFI  G F    
Sbjct: 206 VSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNILFICGGTFVGLE 265

Query: 305 ---------------------HVSRPA----------------DLLPEIQGRFPVRVHLK 327
                                 V   +                 L+PE+ GR PV   L 
Sbjct: 266 DIVGKRLGRKTIGFGQNNQQKKVQERSKNDLLAQASVDDVLEFGLIPELLGRLPVLSSLS 325

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L + D   +LT+ +++L+ Q+++  + E   L+FT+ ++  +A +A   N+     GAR
Sbjct: 326 QLGEGDLVRVLTEPKNSLVRQFQKFFEMEKAELEFTDGALHEIARIAQKKNT-----GAR 380

Query: 388 RLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
            L++V+E+ + DI +   + +  K  V+  E ++
Sbjct: 381 GLRSVIEQAMFDIMYELPEQEAGKKYVVTPEIIQ 414



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 9/219 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVG 65
           +PREIV+ L+ Y+IGQ+ AK+ +A+A+ N ++R     +     EL   NILL+GPTG G
Sbjct: 75  TPREIVTHLNDYVIGQERAKKVMAVAVHNHYKRLMHSEEEGSDVELDKSNILLIGPTGSG 134

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR    PF   + T  TE GYVG +VE ++  L+  A   V  ++R     D
Sbjct: 135 KTLLAKSLARYLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILFID 194

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ +    +    I   + G+       ++    + +          E      D SN  
Sbjct: 195 EIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNIL 254

Query: 180 DIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYP 217
            I GG  VG+ ++  +   +      +   +  VQ+   
Sbjct: 255 FICGGTFVGLEDIVGKRLGRKTIGFGQNNQQKKVQERSK 293


>gi|203284514|ref|YP_002222254.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly]
 gi|203288048|ref|YP_002223063.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1]
 gi|238690569|sp|B5RMG2|CLPX_BORDL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690576|sp|B5RPV8|CLPX_BORRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|201083957|gb|ACH93548.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly]
 gi|201085268|gb|ACH94842.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1]
          Length = 429

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 58/294 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +  M          ++ +    +  D  + L+ +      
Sbjct: 112 SNVLLVGPTGSGKTLLAKKLAAEMNVPFAIADATTLTEAG-YVGEDVENILLKLIHAANG 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            +   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 171 DVSFAE-RGIIYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPRGGRKH 229

Query: 287 ---KYGSINTDHILFIASGAF----HVSRP------------------------------ 309
              +  +INT  ILFI  GAF    ++ +                               
Sbjct: 230 PYEETIAINTHDILFICGGAFVGLENIIKKRINRSFIGFSSSSCKDTGGDNSLKYLEMED 289

Query: 310 ---ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                L+PE  GR PV  +L  L K D   IL + E++++ QY  + K + + L F +D+
Sbjct: 290 LIKFGLIPEFVGRLPVHSYLDKLEKKDLMKILVEPENSIVRQYYHMFKMDNVDLLFEKDA 349

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419
           +DA+A+ A+  N+     GAR L++++E +L+D+ F     +  K V++  + V
Sbjct: 350 LDAIAEEAMLKNT-----GARGLRSILEELLKDVMFEIPSSKQIKKVIVTKDSV 398



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPTGVG 65
           +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R    +      EL   N+LLVGPTG G
Sbjct: 64  TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFKGSKRETGVELEKSNVLLVGPTGSG 123

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT ++++LA     PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 124 KTLLAKKLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAANGDVSFAERGIIYID 183

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI-EVADTSSDISNF 179
           E+ + A       I   + G+    +  ++    + +           E     +     
Sbjct: 184 EIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPRGGRKHPYEETIAINTHDIL 243

Query: 180 DIPGGASVGILNL 192
            I GGA VG+ N+
Sbjct: 244 FICGGAFVGLENI 256


>gi|330928214|ref|XP_003302171.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1]
 gi|311322644|gb|EFQ89757.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1]
          Length = 604

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 146/376 (38%), Gaps = 33/376 (8%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  L   +
Sbjct: 195 IEKSNVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 254

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              +  +    +     ++  ++I  + +          V +  L+  E +  ++  +  
Sbjct: 255 NYDIEATEHGII----VLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPE 310

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +++           S           +V    R   I       +  L +      I +
Sbjct: 311 RSANRPGGLSGGPLGSPPPPGPGGNKGEVFNI-RTDNILFICTGAFSSLHK------IIL 363

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD-LLPLVEGSSVSTKYG 289
           D   +  +    +             A D     GV  E  ++D    + + + +   +G
Sbjct: 364 DRKSKSGMGFGASIRSSSA-----HAAADGVMLGGVEAETFKKDSPFFVPQETEMPNPFG 418

Query: 290 SINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
              +     I        +PADL     +PE+ GR P    + +L++     +LT+ + +
Sbjct: 419 VRQSKREEKI--NVLDYVQPADLQKFGMIPELIGRIPTVCAVSALDEQALVRVLTEPKDS 476

Query: 345 LILQ--YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402
           LI Q  YK  ++   I L FT  ++  +A  A  + +     GAR L+ V++++L    +
Sbjct: 477 LIRQEEYKSFLR--NIELRFTNGALREIARKASKMGT-----GARGLRHVVDQLLLQAKY 529

Query: 403 SASDLQEKTVVIDAEY 418
                  K +++  + 
Sbjct: 530 ETPGSSVKHILVTQDV 545



 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
           +P+ +   LD++++ Q  AK  +++A+     R Q      DE
Sbjct: 82  TPKALRQHLDQFVVDQDRAKIVLSVAVHEHHLRIQELKRQLDE 124


>gi|88810848|ref|ZP_01126105.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
 gi|88792478|gb|EAR23588.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis
           Nb-231]
          Length = 419

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 121/309 (39%), Gaps = 69/309 (22%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D     SN  + G +  G   L+E  ++ +       +   +                
Sbjct: 109 LGDPELGKSNILLIGPSGSGKTLLAETLARRL------AVPFLIADATALTETGYVGE-- 160

Query: 229 DMDTVHRDSIQMVENY------GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEG 281
           D+D + R  +Q  +N       GIV+LDE DK+  R        VS EGVQ+ LL  ++ 
Sbjct: 161 DVDGLIRRLVQSCDNDAQRASLGIVYLDEVDKLAVRHTVSRSRDVSGEGVQQALLRFMDS 220

Query: 282 SSVS-----------TKYGSINTDHILFIASGAFH------------------VSRPA-- 310
           S V             ++  ++T  ILFI  GAF                   V  P   
Sbjct: 221 SVVRFAPRERGAARRPEWLEVDTRQILFICGGAFEGLAQLVERRRRGHGIGFTVDLPGPR 280

Query: 311 -----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                             L+PE  GR PV   L  L++     +LT+  + L+ QY +L+
Sbjct: 281 RCSNFLAYAEADDLIHYGLIPEFVGRLPVVSVLDPLDEDALVRVLTEPANALVRQYTKLL 340

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTV 412
             +G  L FT  ++ ALA  A+   +     GAR L+TV+ERVL +  +      + + +
Sbjct: 341 AMDGCELHFTRGALHALAQEALARGT-----GARGLRTVIERVLLEPMYRLPRQREVQCL 395

Query: 413 VIDAEYVRL 421
            ID   VR 
Sbjct: 396 TIDERAVRD 404



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           PRE+   LD+Y+IGQ+ AK+ +++A+ N ++R    + L D EL   NILL+GP+G GKT
Sbjct: 71  PRELHDFLDQYVIGQEHAKKVLSVAVYNHYKRIGCCSALGDPELGKSNILLIGPSGSGKT 130

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            ++  LAR    PF+  + T  TE GYVG +V+ +IR LV    N  + +       DEV
Sbjct: 131 LLAETLARRLAVPFLIADATALTETGYVGEDVDGLIRRLVQSCDNDAQRASLGIVYLDEV 190

Query: 123 REQASINAEERILD--------ALVGKTATSNTREVFRKKLRDGEISDKEID 166
            + A  +   R  D        AL+    +S  R   R++         E+D
Sbjct: 191 DKLAVRHTVSRSRDVSGEGVQQALLRFMDSSVVRFAPRERGAARRPEWLEVD 242


>gi|254994794|ref|ZP_05276984.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma
           marginale str. Mississippi]
          Length = 404

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 7/231 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63
           F+  P EI   LD Y+IGQ+ +K+ +++A+ N ++R +    + + E+   N+LL+GPTG
Sbjct: 56  FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R    
Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQRGIIY 175

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DEV + +  +    I   + G+       +V    +                   +  N
Sbjct: 176 IDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQINTDN 235

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              I GGA  G+  + E  ++    G +  ++    K    L   E + L+
Sbjct: 236 ILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLV 286



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 136/322 (42%), Gaps = 67/322 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+LR+      E++I         SN  + G    G   L+   ++V+          
Sbjct: 88  HYKRLRNS-GVISEVEI-------SKSNVLLIGPTGSGKTLLARTLARVLQVPFAMADAT 139

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +      +++  +  GI+++DE DKI  +     I   VS 
Sbjct: 140 TLTEAG-YVGEDVENILLKLLQAANFNVEAAQ-RGIIYIDEVDKISRKSENASITRDVSG 197

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S            ++  INTD+ILFI  GAF             
Sbjct: 198 EGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQINTDNILFIFGGAFDGLEKIIEARNRG 257

Query: 305 -------HVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLILT 339
                  +V + AD                  L+PE  GR PV   L  L++     IL 
Sbjct: 258 SCMGFEANVQKIADKRKDILCYTEPEDLVKFGLIPEFVGRIPVVTSLGRLDEETLYRILV 317

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           + +++L+ QY +L + + + L F   ++ A+A  AV  N+     GAR L  +ME +L D
Sbjct: 318 EPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKKAVARNT-----GARGL-PIMESLLLD 371

Query: 400 ISFSASDLQEKTVVIDAEYVRL 421
             F+    +   VV+DA  V  
Sbjct: 372 FMFNPLGCEGGKVVVDAAMVED 393


>gi|189195398|ref|XP_001934037.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979916|gb|EDU46542.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 606

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 142/375 (37%), Gaps = 31/375 (8%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  L   +
Sbjct: 197 IEKSNVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 256

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              +  +    +     ++  ++I  + +          V +  L+  E +  ++  +  
Sbjct: 257 NYDIEATEHGII----VLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPE 312

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            +++           S           +V    R   I       +  L +      I +
Sbjct: 313 RSANRPGGLSGGPLGSPPPPGPGGNKGEVFNI-RTDNILFICTGAFSNLHK------IIL 365

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           D   +  +    +             A D     GV  E  ++D    V   +      S
Sbjct: 366 DRKSKSGMGFGASIRASSA-----HAAADGVMLGGVEAETFKKDSPFFVPQETEMPNPFS 420

Query: 291 INTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           +                +PADL     +PE+ GR P    + SL++     +LT+ + +L
Sbjct: 421 VR-QPKREEKVNVLDYVQPADLQKFGMIPELIGRIPTVCAVSSLDEHALVRVLTEPKDSL 479

Query: 346 ILQ--YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           I Q  YK  ++   I L FT  ++  +A  A  + +     GAR L+ V++++L    + 
Sbjct: 480 IRQEEYKSFLR--NIELRFTNGALREIARKASKMGT-----GARGLRHVVDQLLLQAKYE 532

Query: 404 ASDLQEKTVVIDAEY 418
                 K +++  + 
Sbjct: 533 TPGSSVKHILVTQDV 547



 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
           +P+ +   LD++++ Q  AK  +++A+     R Q      DE
Sbjct: 84  TPKVLRQHLDQFVVDQDRAKIVLSVAVHEHHLRIQELKRQLDE 126


>gi|198283160|ref|YP_002219481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666382|ref|YP_002425389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226706572|sp|B7J791|CLPX_ACIF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706573|sp|B5EQ29|CLPX_ACIF5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|198247681|gb|ACH83274.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518595|gb|ACK79181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 423

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 77/316 (24%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  E   K+ ++E+     D SN  + G    G   L++  ++++          ++
Sbjct: 93  NHYKRLEHGGKDNEVEL-----DKSNILLIGPTGSGKTLLAQTLARLLNVPFAMADATTL 147

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q  +        GIV++DE DKI  +     I  
Sbjct: 148 TEA--------GYVGEDVENIIQKLLQKCDYDVEKAQTGIVYIDEIDKITRKSENPSITR 199

Query: 265 GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------- 304
            VS EGVQ+ LL L+EG+  S            ++  ++T HILFI  GAF         
Sbjct: 200 DVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTRHILFICGGAFAGLEKSVSA 259

Query: 305 --------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSD 333
                                         P DL     +PE  GR P+   L+ L++  
Sbjct: 260 RLEKGGMGFNAPLKRRDKEATAAMLMQNLEPEDLVRYGLIPEFVGRLPILALLEELDEEA 319

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              ILTD ++ L+ QY++L   EG+ L+F  +++ A+A  A+   +     GAR L++++
Sbjct: 320 LISILTDPKNALVKQYQKLFALEGVTLEFRTEALRAIAKKALARKT-----GARGLRSIL 374

Query: 394 ERVLEDISFSASDLQE 409
           E++L D  +    +  
Sbjct: 375 EQILLDTMYELPSMSG 390



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 9/230 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ  AK+ +++A+ N ++R +    D   EL   NILL+GPTG GK
Sbjct: 65  KPMEIRKTLDDYVIGQDVAKKVLSVAVYNHYKRLEHGGKDNEVELDKSNILLIGPTGSGK 124

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDE 121
           T +++ LARL   PF   + T  TE GYVG +VE II+ L+      V +++      DE
Sbjct: 125 TLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVYIDE 184

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + +    +    I   + G+       ++    +            +      D  +   
Sbjct: 185 IDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTRHILF 244

Query: 182 PGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
             G +   L  S    L    MG     K R         +   E + L+
Sbjct: 245 ICGGAFAGLEKSVSARLEKGGMGFNAPLKRRDKEATAAMLMQNLEPEDLV 294


>gi|261337233|ref|ZP_05965117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium gallicum DSM 20093]
 gi|270277588|gb|EFA23442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium gallicum DSM 20093]
          Length = 477

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 125/297 (42%), Gaps = 60/297 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L++  +  M          S+ +     + D+ + L+       D
Sbjct: 128 SNILLIGPTGVGKTYLAQTLADAMDVPFIIADATSLTEA--GYVGDDVETLLSRLLDAAD 185

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDLLPLVEGSSVSTKYGS--- 290
                  +GIV++DE DKI  +   N      VS EGVQ+ LL L+EG+ V         
Sbjct: 186 GDADRACHGIVYIDEIDKIARKSGDNTSLTRDVSGEGVQQALLKLMEGTIVDVPIEHARK 245

Query: 291 --------INTDHILFIASGAF----------------------------HVS------- 307
                   I+T ++LFI +GAF                            HV+       
Sbjct: 246 GKEAQTVRIDTRNVLFICAGAFVGLNDIVERRLGRHESGFGSALRTAPLDHVTLENAVSA 305

Query: 308 ---RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                  LLPE  GR PV   LK L++ D + +LT     L  QY +L  T+G+ L FT+
Sbjct: 306 DDLADFGLLPEFIGRVPVVSVLKQLDEHDLQAVLTQPRDALTKQYAKLFATDGVDLRFTQ 365

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420
           D+I+ +A  A+  ++     GAR L+ +MER LE   F      +   V++DA  +R
Sbjct: 366 DAIEEIAHQAIASHT-----GARGLRAIMERALESTMFELPSHDDVVAVIVDAPSIR 417



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------------------LRD 49
           +P  I ++L+  ++GQ  AKR +++A+ N ++R  +                     +  
Sbjct: 64  TPASINAKLNDTVVGQAAAKRTLSVAVHNHYKRVLMEEREALGAADGSHHHAMPQALVDV 123

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
            +   NILL+GPTGVGKT +++ LA     PFI  + T  TE GYVG +VE ++  L+
Sbjct: 124 RVSKSNILLIGPTGVGKTYLAQTLADAMDVPFIIADATSLTEAGYVGDDVETLLSRLL 181


>gi|32490903|ref|NP_871157.1| ATP-dependent protease ATP-binding subunit ClpX [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|31340012|sp|Q8D347|CLPX_WIGBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25166109|dbj|BAC24300.1| clpX [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 415

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 74/313 (23%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++ +      K+   +         +      D++ V 
Sbjct: 112 GKSNVLLIGPTGSGKTLLAETLARFL------KVPFIISDATTL--TEAGYVGEDVENVI 163

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SV 284
           +  +   +       +GI+++DE DKI  +     I   VS EGVQ+ LL L+EG+  +V
Sbjct: 164 QRLLNKCDFDIKKAQHGIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTISAV 223

Query: 285 STKYG---------SINTDHILFIASGAFH------------------------------ 305
             K G          ++T +ILFI  GAF                               
Sbjct: 224 PKKGGRKHPQQEFFHVDTTNILFICGGAFSGLNKIIEQRVLVKNSIGFNVDINNKLNINN 283

Query: 306 ------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                   +P DL+     PE  GR P+   LK LN S+   IL   ++ L+ QYK L  
Sbjct: 284 KKNFLSQVQPEDLIKFGLIPEFVGRLPIISVLKELNISELIEILIQPKNALVKQYKLLFN 343

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVV 413
            EG+ L+F E+++ ++A  +++  +     GAR L++++E +L D  +S    +  + +V
Sbjct: 344 LEGVELEFNENALISIAKESLHKKT-----GARGLRSIIEHILLDTMYSLPSKKNVQKIV 398

Query: 414 IDAEYVRLHIGDF 426
           I+   +       
Sbjct: 399 INDGVILRKEKPL 411



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVGK 66
            P EI + L+ Y+IGQ+ AK+ +++++ N +++ +   ++ + EL   N+LL+GPTG GK
Sbjct: 67  KPCEIFNYLNSYVIGQETAKKILSVSVYNHYKKLKNLKSNNKVELGKSNVLLIGPTGSGK 126

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LAR    PFI  + T  TE GYVG +VE +I+ L++     +++++   +    
Sbjct: 127 TLLAETLARFLKVPFIISDATTLTEAGYVGEDVENVIQRLLNKCDFDIKKAQHGIIY--- 183

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +   E  I        
Sbjct: 184 ----IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTISAVPKKGG 228


>gi|189234285|ref|XP_969886.2| PREDICTED: similar to ATP-dependent clp protease atp-binding
           subunit clpx [Tribolium castaneum]
          Length = 604

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 77/260 (29%)

Query: 243 NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVST-----------KYGS 290
             GIVFLDE DKI           V  EGVQ+ +L ++EG+ V+            +   
Sbjct: 328 QIGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETIQ 387

Query: 291 INTDHILFIASGAFH-----------------------------VSRPADL--------- 312
           ++T +ILF+ASGA++                             VS+ A L         
Sbjct: 388 VDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQTAEE 447

Query: 313 --------LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                   L ++Q R              FPV V   SLNK+    ILT+ ++ L+ QY+
Sbjct: 448 ENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALLPQYQ 507

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  +   L FT  ++D++A +A+   +     GAR L+ +ME +L +  F        
Sbjct: 508 RLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPGSGIT 562

Query: 411 TVVIDAEYVRLHIGDFPSET 430
           TV +  EYVR   G    + 
Sbjct: 563 TVHVTEEYVRGESGPVYEKR 582



 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQ 42
           I   L+R+++GQ+ AK+ +++A+ N ++R  
Sbjct: 144 IYDYLNRHVVGQEHAKKVLSVAVYNHYKRIY 174


>gi|238005674|gb|ACR33872.1| unknown [Zea mays]
          Length = 362

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 64/238 (26%)

Query: 243 NYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTK-----------YG 289
             GIV++DE DKI  +         VS EGVQ+ LL ++EG+ VS               
Sbjct: 71  QQGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNI 130

Query: 290 SINTDHILFIASGAF-----------HVSR------------------------------ 308
            I+T +ILFI  GAF           H S                               
Sbjct: 131 QIDTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVE 190

Query: 309 -----PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   L+PE  GRFP+ V L SL++     +LT+ ++ L  QY +L +   + L FT
Sbjct: 191 SGDLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFT 250

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           E+++  +A  A++ N+     GAR L++++E +L +  +   + +     IDA  V  
Sbjct: 251 EEALRLIAKRAISKNT-----GARGLRSILESILTEAMYEIPETRTGKDKIDAVVVDE 303



 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NIL++GPTG GKT +++ LAR    PF+  + T  T+ GYVG +VE I+  L+  
Sbjct: 3   ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLAA 62

Query: 110 AINIVRESRRDEVR----EQASINAE 131
           A   V  +++  V     ++ +  AE
Sbjct: 63  ADFDVAAAQQGIVYIDEVDKITKKAE 88


>gi|71023509|ref|XP_761984.1| hypothetical protein UM05837.1 [Ustilago maydis 521]
 gi|46101549|gb|EAK86782.1| hypothetical protein UM05837.1 [Ustilago maydis 521]
          Length = 2761

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 153/412 (37%), Gaps = 62/412 (15%)

Query: 53   PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
              NILL+GP+G GKT + R LA+    PF+ V+ T  T  GYVG +VE II+ L+  A  
Sbjct: 2279 KSNILLLGPSGSGKTLLLRTLAQALDVPFVHVDATPLTMAGYVGEDVESIIQRLLVEAGW 2338

Query: 113  IVRESRR--------DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
             V  ++R        D++R+            A  G         V +  LR  E +  +
Sbjct: 2339 DVDRAQRGIVCIDEIDKLRKTGLGGGGGGAGGAGGGGGKDVGGEGVQQALLRILEGTTIQ 2398

Query: 165  IDIEVADTSSDISNF----------DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
            I  +    +   +              P  A+ G +N  E    +      ++ +     
Sbjct: 2399 IANKAGANAGASAAGTATAASKVPKSYPRQAATGDVNGVETAGGLGPWYNHRRAQADSAD 2458

Query: 215  CY-----PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
                       + ++  L    +V   SI  V +   V +D    I  R        +  
Sbjct: 2459 AKWNSNSLSSSQTQAASL----SVDTSSILFVLSGAFVGIDHV--IRNRLDRLSGDPTTL 2512

Query: 270  GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRV 324
                         +VS++  +                  P+DL     +PE  GR PV V
Sbjct: 2513 -------------NVSSEDQNEKPHAATLSQCDLLSRLEPSDLEQYGMIPEFIGRVPVSV 2559

Query: 325  HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD-----------V 373
             L  L+  D   ++T+  ++L+ QY  L K  GI L  +  +I+ +              
Sbjct: 2560 VLNPLSHQDLIRVMTEPRNSLVDQYTSLFKLNGIELHISRGAIEEVVHRAMGTCSAANSK 2619

Query: 374  AVNLNSTVG---DIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVRL 421
            A+  NS        GAR L+ +ME VL D  + +      K +++D + VR 
Sbjct: 2620 ALVRNSADRGGGGGGARSLRRIMEDVLLDAFYESYGSSSVKYILVDRQSVRD 2671



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 6    NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
            + SPR +V  LD Y++GQ  AK+ +A+ + N + R      ++ E
Sbjct: 1871 SISPRSLVKYLDSYVVGQTRAKKVLAVGVWNHYLRVASNQRMKHE 1915


>gi|33241266|ref|NP_876208.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|46576459|sp|Q7V9L5|CLPX_PROMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|33238796|gb|AAQ00861.1| ATP-dependent protease Clp ATPase subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 450

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 65/313 (20%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +I++  T    SN  + G    G   L++  ++++          ++ +    +  D  +
Sbjct: 123 EIDLHTTKLHKSNILLIGPTGSGKTLLAQTLAELLDVPFAVADATTLTEAG-YVGEDVEN 181

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS- 282
            L+ +       +++ +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+ 
Sbjct: 182 ILLRLLQKSDMDVELAQ-RGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTI 240

Query: 283 -SVSTKYG---------SINTDHILFIASGAF---------------------------- 304
            +V  + G          I+T  ILFI  GAF                            
Sbjct: 241 ANVPPQGGRKHPYQDSIQIDTSQILFICGGAFVGLEDIVQKRLGRNSIGFMTNDNRGKSR 300

Query: 305 -----------HVSRPAD-----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
                      +   P D     L+PE  GR PV   L+ L+      IL +    +I Q
Sbjct: 301 KSNDLPKNQVLNNLEPDDLVRYGLIPEFIGRMPVSAVLEPLDVDALEAILQEPRDAVIKQ 360

Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           +  LM  + + L F E++I ++A  A    +     GAR L+ ++E ++ ++ +      
Sbjct: 361 FITLMSMDNVKLTFEENAIKSIAKEAFRRKT-----GARALRGIVEELMLELMYKLPSQD 415

Query: 409 E-KTVVIDAEYVR 420
           E K   +    V 
Sbjct: 416 EIKNCSVTQAMVE 428



 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 19/245 (7%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL-------MPKN 55
           L+    P EI S LD  ++GQ+DAK+ +++A+ N ++R        +E+          N
Sbjct: 76  LSSIPKPIEIKSFLDNQVVGQEDAKKILSVAVYNHYKRLAWQGSETNEIDLHTTKLHKSN 135

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           ILL+GPTG GKT +++ LA L   PF   + T  TE GYVG +VE I+  L+  +   V 
Sbjct: 136 ILLIGPTGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKSDMDVE 195

Query: 116 ESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
            ++R     DE+ + A  +    I   + G+       ++    + +             
Sbjct: 196 LAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQD 255

Query: 171 DTSSDISNF-DIPGGASVGILNL------SELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
               D S    I GGA VG+ ++            +    R K  + +       L   E
Sbjct: 256 SIQIDTSQILFICGGAFVGLEDIVQKRLGRNSIGFMTNDNRGKSRKSNDLPKNQVLNNLE 315

Query: 224 SDRLI 228
            D L+
Sbjct: 316 PDDLV 320


>gi|282898111|ref|ZP_06306106.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
 gi|281197255|gb|EFA72156.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9]
          Length = 252

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDELMPKNIL 57
           + L     PREI + LD ++IGQ +AK+ +++A+ N ++R    Q  A+   EL   NIL
Sbjct: 56  LSLNQIPKPREIKNYLDDHVIGQDEAKKVLSVAVYNHYKRLAVAQGKAEDSVELQKSNIL 115

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+GPTG GKT +++ LA++   PF   + T  TE GYVG +VE I+  L+ VA   V E+
Sbjct: 116 LIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEA 175

Query: 118 RR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
           +R     DE+ + A  +    I   + G+       ++    + +      
Sbjct: 176 QRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTVANVPPQGD 226



 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +  V   
Sbjct: 112 SNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAG-YVGEDVENILLRLLQVANL 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK 287
            ++  +  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +  
Sbjct: 171 DVEEAQ-RGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTVANVP 222


>gi|222632348|gb|EEE64480.1| hypothetical protein OsJ_19330 [Oryza sativa Japonica Group]
          Length = 504

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 76/318 (23%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DIE+  +     N  + G    G   L++  ++            ++ +        ES 
Sbjct: 114 DIELEKS-----NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES- 167

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSS 283
            + ++    + +++  E  GIV++DE DK++ +   N     VS EGVQ  LL + EG+ 
Sbjct: 168 IICNLLAAAKFNVEATE-RGIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTV 226

Query: 284 VSTK-----------YGSINTDHILFIASGA--------------FHVSR---------- 308
           ++             Y  +NT +ILFI  G+               H+            
Sbjct: 227 INVPRKRNQDSISDGYVEVNTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRN 286

Query: 309 ----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                    L+PE  GR P+ V L  L+++    +L + ++ + 
Sbjct: 287 CGWTNAIGESCCVEAIESDDLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIG 346

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L K   + L FTE+++  +A  A +  +     GAR L+++ME +L +  F   D
Sbjct: 347 KQYKKLFKMNDVKLHFTENALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPD 401

Query: 407 LQEKT-----VVIDAEYV 419
            +E       V++D E V
Sbjct: 402 AREGKEKIIAVLVDEESV 419



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 26/141 (18%)

Query: 8   SPREIVSELDRYIIGQQDAKRA----------VAIALR-------NRWRR---------Q 41
           +P+EI   LD +++GQ  AK+           + +A+        N              
Sbjct: 48  TPKEIRRGLDEFVVGQDKAKKVNETSLLVGVVLCVAVHITPRGIQNSSNCSMKSSACGDV 107

Query: 42  QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
            +  D   EL   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE 
Sbjct: 108 SMSGDDDIELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES 167

Query: 102 IIRDLVDVAINIVRESRRDEV 122
           II +L+  A   V  + R  V
Sbjct: 168 IICNLLAAAKFNVEATERGIV 188


>gi|218197157|gb|EEC79584.1| hypothetical protein OsI_20758 [Oryza sativa Indica Group]
          Length = 495

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 76/318 (23%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DIE+  +     N  + G    G   L++  ++            ++ +        ES 
Sbjct: 105 DIELEKS-----NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES- 158

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSS 283
            + ++    + +++  E  GIV++DE DK++ +   N     VS EGVQ  LL + EG+ 
Sbjct: 159 IICNLLAAAKFNVEATE-RGIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTV 217

Query: 284 VSTK-----------YGSINTDHILFIASGA--------------FHVSR---------- 308
           ++             Y  +NT +ILFI  G+               H+            
Sbjct: 218 INVPRKRNQDSISDGYVEVNTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRN 277

Query: 309 ----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                    L+PE  GR P+ V L  L+++    +L + ++ + 
Sbjct: 278 CGWTNAIGESCCVEAIESDDLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIG 337

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L K   + L FTE+++  +A  A +  +     GAR L+++ME +L +  F   D
Sbjct: 338 KQYKKLFKMNDVKLHFTENALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPD 392

Query: 407 LQEKT-----VVIDAEYV 419
            +E       V++D E V
Sbjct: 393 AREGKEKIIAVLVDEESV 410



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 17/132 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----------------LPADLRDE 50
           +P+EI   LD +++GQ  AK+ + +A+ N ++R                   +  D   E
Sbjct: 48  TPKEIRRGLDEFVVGQDKAKKVLCVAVHNHYKRIYSESSNCSMKSSACGDVSMSGDDDIE 107

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE II +L+  A
Sbjct: 108 LEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAA 167

Query: 111 INIVRESRRDEV 122
              V  + R  V
Sbjct: 168 KFNVEATERGIV 179


>gi|254444637|ref|ZP_05058113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verrucomicrobiae bacterium DG1235]
 gi|198258945|gb|EDY83253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Verrucomicrobiae bacterium DG1235]
          Length = 429

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 131/313 (41%), Gaps = 58/313 (18%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E AD   + SN  + G    G   L+   ++++          ++ +    +  D  + +
Sbjct: 115 EYADVEVEKSNILLVGPTGSGKTFLARNLARILDVPFAIADATTLTEAG-YVGDDVENIV 173

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG++ +
Sbjct: 174 LRLLQSANYDVKRAE-CGIIYVDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTTCN 232

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       +Y  ++T  ILFI  GAF                              
Sbjct: 233 VPPQGGRKHPNQEYIQVDTSKILFICGGAFVGLESIIQKRSGGGTLGFGSDTKEELTGEQ 292

Query: 305 --HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                +P DL     +PE  GR PV   L+ L   D   IL  T++++I QY +L   +G
Sbjct: 293 IMKNVQPEDLVKFGMIPEFIGRLPVVSVLEMLTVGDLENILLSTKNSIIKQYAKLFSIDG 352

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDA 416
           + L  T  ++ A+A+ A+ L +     GAR L+++ME +  ++ +   D  +   VVI+ 
Sbjct: 353 VKLTLTSGAVKAIAEKAIELQT-----GARALRSIMENLTLEMMYEVPDRDDIDEVVINR 407

Query: 417 EYVRLHIGDFPSE 429
           + V         +
Sbjct: 408 DVVLGKKKPVFKK 420



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 21/138 (15%)

Query: 2   KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------------------- 41
           K  FN   P EI + LD+++IGQ+ AK+ +++A+ N ++R                    
Sbjct: 51  KPDFNLVKPTEIKAVLDQHVIGQEHAKKVLSVAVYNHYKRLGFEVAKPSDGESKEEAVLA 110

Query: 42  QLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
             P++  D E+   NILLVGPTG GKT ++R LAR+   PF   + T  TE GYVG +VE
Sbjct: 111 APPSEYADVEVEKSNILLVGPTGSGKTFLARNLARILDVPFAIADATTLTEAGYVGDDVE 170

Query: 101 QIIRDLVDVAINIVRESR 118
            I+  L+  A   V+ + 
Sbjct: 171 NIVLRLLQSANYDVKRAE 188


>gi|116515218|ref|YP_802847.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257072|gb|ABJ90754.1| specificity component of Clp ATP-dependent serine protease,
           chaperone [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 420

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 121/303 (39%), Gaps = 66/303 (21%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDT 232
             SN  I G    G   ++E  +K +          ++ +        E+   +LI+   
Sbjct: 108 GKSNILIIGPTGTGKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIEN-- 165

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYG- 289
                I   E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S     
Sbjct: 166 -SNFDINKAEK-GIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKG 223

Query: 290 ----------SINTDHILFIASGAF----------------------------------- 304
                      INT  ILFI  G+F                                   
Sbjct: 224 TRKHPQQETWKINTSKILFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNY 283

Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
            +  +P DL+     PE   R P+ V LKSL KSD   IL   ++ LI QYK+L   E +
Sbjct: 284 LNKIQPQDLIKFGLIPEFISRLPIIVTLKSLKKSDLIKILCKPKNALIKQYKKLFSLEKV 343

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAE 417
            L F   ++  +A  A+   +     GAR L++++E VL +  +        K++ ID+ 
Sbjct: 344 KLKFDNTALKEIAKYAIKKKT-----GARGLRSILESVLLNTMYKIPTFKNIKSIHIDSS 398

Query: 418 YVR 420
            ++
Sbjct: 399 VIK 401



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64
           ++P+ I   LD++IIGQ+ AK+ +++A+ N +++       +   EL   NIL++GPTG 
Sbjct: 61  YTPKIIKEYLDKFIIGQKKAKKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGT 120

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
           GKT I+  LA+    PF   + T  TE GYVG +VE I+R L++ +   + ++      E
Sbjct: 121 GKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIENSNFDINKA------E 174

Query: 125 QASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDI 167
           +  I  +E  +D +  K+   S TR+V  + ++   +   E  I
Sbjct: 175 KGIIYIDE--IDKITKKSENLSITRDVSGEGVQQSLLKIIEGTI 216


>gi|115465091|ref|NP_001056145.1| Os05g0533900 [Oryza sativa Japonica Group]
 gi|48843829|gb|AAT47088.1| putative ATP-dependent Clp protease subunit clpX [Oryza sativa
           Japonica Group]
 gi|113579696|dbj|BAF18059.1| Os05g0533900 [Oryza sativa Japonica Group]
          Length = 406

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 76/318 (23%)

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           DIE+  +     N  + G    G   L++  ++            ++ +        ES 
Sbjct: 16  DIELEKS-----NILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES- 69

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSS 283
            + ++    + +++  E  GIV++DE DK++ +   N     VS EGVQ  LL + EG+ 
Sbjct: 70  IICNLLAAAKFNVEATE-RGIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTV 128

Query: 284 VSTK-----------YGSINTDHILFIASGA--------------FHVSR---------- 308
           ++             Y  +NT +ILFI  G+               H+            
Sbjct: 129 INVPRKRNQDSISDGYVEVNTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRN 188

Query: 309 ----------------------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
                                    L+PE  GR P+ V L  L+++    +L + ++ + 
Sbjct: 189 CGWTNAIGESCCVEAIESDDLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIG 248

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            QYK+L K   + L FTE+++  +A  A +  +     GAR L+++ME +L +  F   D
Sbjct: 249 KQYKKLFKMNDVKLHFTENALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPD 303

Query: 407 LQEKT-----VVIDAEYV 419
            +E       V++D E V
Sbjct: 304 AREGKEKIIAVLVDEESV 321



 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query: 41  QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100
             +  D   EL   NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE
Sbjct: 9   VSMSGDDDIELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVE 68

Query: 101 QIIRDLVDVAINIVRESRRDEV 122
            II +L+  A   V  + R  V
Sbjct: 69  SIICNLLAAAKFNVEATERGIV 90


>gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis]
          Length = 443

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 16/252 (6%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62
           T    P+EI   LD Y+IGQ+ +K+ +++A+ N ++R    + + + E+   N+LL+GPT
Sbjct: 56  TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  ++R  +
Sbjct: 116 GSGKTLLARTLARVLQIPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGII 175

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                    + +         TS TR+V  + ++   +  K I+  V+            
Sbjct: 176 Y-------IDEVDKISRKSENTSITRDVSGEGVQQALL--KVIEGTVSSVPPQGGRKHPH 226

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
             A         +    + + +       V   Y   +  +   L D   +  + +++  
Sbjct: 227 QSAESLHSKSVLMLQ--LSNRKVSSTTKKVTALYTIEIIQDFQELSD---LQEEVLELNY 281

Query: 243 NYGIVFLDEFDK 254
                  D  DK
Sbjct: 282 EGAFTRFD-VDK 292



 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           +++LD  V     S              +S+  +  EV  + S++      G    G   
Sbjct: 65  KKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLI---GPTGSGKTL 121

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           L+   ++V+          ++ +    +  D  + L+ +      ++   +  GI+++DE
Sbjct: 122 LARTLARVLQIPFAMADATTLTEAG-YVGEDVENILLKLLQAANFNVDAAQ-RGIIYIDE 179

Query: 252 FDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK 287
            DKI  +     I   VS EGVQ+ LL ++EG+  S  
Sbjct: 180 VDKISRKSENTSITRDVSGEGVQQALLKVIEGTVSSVP 217


>gi|297583714|ref|YP_003699494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           selenitireducens MLS10]
 gi|297142171|gb|ADH98928.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus
           selenitireducens MLS10]
          Length = 423

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 152/357 (42%), Gaps = 65/357 (18%)

Query: 128 INAEERILDALVGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
               E + D ++G+     T  V      +    + +  D+E+A +     N  + G   
Sbjct: 65  QEIREILNDYVIGQDRAKKTLSVAVYNHYKRVNATVRNDDVELAKS-----NICLIGPTG 119

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G   L++  ++++          S+ +    +  D  + L+ +       ++  E  GI
Sbjct: 120 SGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENILLKLIQAADYDVEKAE-RGI 177

Query: 247 VFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINT 293
           +++DE DK+  +     I   VS EGVQ+ LL ++EG++ S            ++  I+T
Sbjct: 178 IYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDT 237

Query: 294 DHILFIASGAFH-------------------------------VSR--PADLL-----PE 315
            ++LFI  GAF                                +S+  P DLL     PE
Sbjct: 238 TNVLFIVGGAFDGIDSIIKQRLGKKVIGFGAEADQEDLKEGEYLSKILPEDLLRYGLIPE 297

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV   L+ L+++    ILT  ++ L+ QY++L++ + + L+FTE ++  +A  A+
Sbjct: 298 FIGRIPVIASLEQLDEAALVEILTAPKNALVKQYQKLLELDEVELEFTEKALKEVATKAI 357

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
              +     GAR L++++E ++ D+ +      +    VI  + V  ++     + D
Sbjct: 358 ERKT-----GARGLRSIIEGLMLDVMYDLPSRDDIVKCVITDKTVTDNVKPTLLDKD 409



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 11/248 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P+EI   L+ Y+IGQ  AK+ +++A+ N ++R        D EL   NI L+GPTG GK
Sbjct: 63  KPQEIREILNDYVIGQDRAKKTLSVAVYNHYKRVNATVRNDDVELAKSNICLIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ R     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           V + A  +    I   + G+       ++                        D +N   
Sbjct: 183 VDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLF 242

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             G +   ++     S +     KK I    +    +L   E    I  + + R  +   
Sbjct: 243 IVGGAFDGID-----SIIKQRLGKKVIGFGAEADQEDLKEGEYLSKILPEDLLRYGLIPE 297

Query: 242 ENYGIVFL 249
               I  +
Sbjct: 298 FIGRIPVI 305


>gi|313682640|ref|YP_004060378.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155500|gb|ADR34178.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum
           kujiense DSM 16994]
          Length = 403

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 138/343 (40%), Gaps = 62/343 (18%)

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           E+      + I+     K   +       K++ +   ++ E++          SN  + G
Sbjct: 60  EKIVEFLNKYIIGQEDAKKVLAVALYNHYKRIENPVYNNVELE---------KSNIMLVG 110

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
               G   L++  SK+M          ++ +    +  D    L  +       I + + 
Sbjct: 111 PTGSGKTLLAKSLSKIMQVPFAVADATALTEAG-YVGEDVESILSRLLAAANYDIDLAQ- 168

Query: 244 YGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSV-----------STKYGS 290
            GI+++DE DKI  +   +  G  VS EGVQ+ LL ++EG+ V           +T+   
Sbjct: 169 RGIIYIDEVDKIARKGESSTMGRDVSGEGVQQGLLKILEGAEVYVPIKGSRKNSTTETVL 228

Query: 291 INTDHILFIASGAF-------HVSR-------------------------PADLLPEIQG 318
            NT H+LF+  GAF       H  +                            ++PE  G
Sbjct: 229 FNTSHVLFVCGGAFVGLVPDTHTKKTNKVGFSKSASADAKPKKIDAKALVHYGMIPEFIG 288

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R PV   L  L K     IL + ++ LI Q++ L   +GI L+F + +++A+A  A++  
Sbjct: 289 RIPVVAQLGELTKDQMIQILQEPDNALIKQFQALFDMDGIELNFEDKALEAVAQKAIDRG 348

Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
                +GAR L+ ++E  +  + FS    +  ++V +    + 
Sbjct: 349 -----VGARGLRGIIEEAMLPLQFSCPSKKNLQSVTVTEAVIE 386



 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 77/126 (61%), Gaps = 5/126 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +IV  L++YIIGQ+DAK+ +A+AL N ++R + P     EL   NI+LVGPTG GKT
Sbjct: 58  TPEKIVEFLNKYIIGQEDAKKVLAVALYNHYKRIENPVYNNVELEKSNIMLVGPTGSGKT 117

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
            +++ L+++   PF   + T  TE GYVG +VE I+  L+  A   +  ++R     DEV
Sbjct: 118 LLAKSLSKIMQVPFAVADATALTEAGYVGEDVESILSRLLAAANYDIDLAQRGIIYIDEV 177

Query: 123 REQASI 128
            + A  
Sbjct: 178 DKIARK 183


>gi|325662429|ref|ZP_08151035.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471263|gb|EGC74487.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 213

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 67/112 (59%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI + LD Y+IGQ +AK+ +A+++ N ++R     DL  EL   NIL++GPTG GK
Sbjct: 64  LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           T +++ LA++   PF   + T  TE GYVG +VE I+  ++  A   +  + 
Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAADGDIERAE 175



 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILMLGPTGCGKTFLAQTLAKILNVPFAIADATALTEAG-YVGEDVENILLKIIQAADG 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLP 277
            I+  E YGI+++DE DKI  +     I   VS EGVQ+ LL 
Sbjct: 170 DIERAE-YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLK 211


>gi|283479303|emb|CAY75219.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           pyrifoliae DSM 12163]
          Length = 292

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 66  TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  +ARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ 225



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 27/209 (12%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   +L         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSSLPTPH---EIRHHLDDYVIGQERAKKVLSVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGIELGKSNILLIGPTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAF 251


>gi|196250175|ref|ZP_03148869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
 gi|196210359|gb|EDY05124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
          Length = 262

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
            P EI   LD Y+IGQ +AK+++A+A+ N ++R    + + D EL   NIL++GPTG GK
Sbjct: 63  KPVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGK 122

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V  + +     DE
Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYIDE 182

Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           + + A  +    I   + G+       ++    +                   D +N   
Sbjct: 183 IDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNILF 242

Query: 182 PGGASVGILN 191
             G +   + 
Sbjct: 243 ICGGAFDGIE 252



 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           ++ D     SN  + G    G   L++  ++++          S+ +    +  D  + L
Sbjct: 101 KIDDVELSKSNILMIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAG-YVGEDVENIL 159

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       ++  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 160 LKLIQAADYDVERAEK-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIAS 218

Query: 286 T-----------KYGSINTDHILFIASGAFHVSRP 309
                       ++  I+T +ILFI  GAF    P
Sbjct: 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEP 253


>gi|294141767|ref|YP_003557745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
 gi|293328236|dbj|BAJ02967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
          Length = 418

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 144/416 (34%), Gaps = 80/416 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R +        EL   NILL+GPTG GK
Sbjct: 60  TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNSNPKDGVELGKSNILLIGPTGSGK 119

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++   AR    PF   + T  TE GYVG +VE II+ L+      V +++R  V    
Sbjct: 120 TLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY--- 176

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                + I          S TR+V  + ++   +  K I+  VA                
Sbjct: 177 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ----------- 219

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                  +   +        KI       +  L     +++I+     R        +G 
Sbjct: 220 ----GGRKHPQQEFLQVDTSKILFICGGAFSGL-----EKVIEQ----RSQTGSGIGFGA 266

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306
               E DK    +    +          +   +    V +    ++ D ++ I S   + 
Sbjct: 267 QIKGESDKATISEILMQVEPEDLVKYGLIPEFIGRLPVLSTLAELDEDALVQILSEPKNA 326

Query: 307 -SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
            ++    L E++G     V L    +   + I                            
Sbjct: 327 LTKQFAALFEMEG-----VEL-EFREDALKAI---------------------------- 352

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
           +  A+              G          +L DI +    + +   VVID   V+
Sbjct: 353 AAKAMTRKTGARGLRSIVEG----------ILLDIMYDLPSVDDVAKVVIDESVVK 398


>gi|213419495|ref|ZP_03352561.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 265

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 182

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 183 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ 225



 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 27/209 (12%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGVELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 223 PPQGGRKHPQQEFLQVDTSKILFICGGAF 251


>gi|259416323|ref|ZP_05740243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
 gi|259347762|gb|EEW59539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter
           sp. TrichCH4B]
          Length = 395

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVG 65
           +P++I   LD Y+IGQ  AKR +++A+ N ++R      A    EL   NILL+GPTG G
Sbjct: 65  TPKDICDVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDIELSKSNILLIGPTGCG 124

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE II  L+  +   V  ++R     D
Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYID 184

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV +    +    I   + G+       ++    +            +      D +N  
Sbjct: 185 EVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNIL 244

Query: 181 IPGGASVGILN---LSELFSKVMGSGRKKKIRMS--VQKCYPELMRDESDRL 227
              G +   L+           MG G   +      V + + +L  ++  + 
Sbjct: 245 FICGGAFAGLDRIIKQRGKGSAMGFGADVRDESDAGVGETFKDLEPEDLLKF 296



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 61/267 (22%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
               K+L   + +  +I++         SN  + G    G   L++  ++++        
Sbjct: 92  HNHYKRLNHAQKAGNDIEL-------SKSNILLIGPTGCGKTLLAQTLARILDVPFTMAD 144

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
             ++ +    +  D  + ++ +      +++  +  GIV++DE DKI  +     I   V
Sbjct: 145 ATTLTEAG-YVGEDVENIILKLLQASEYNVERAQ-RGIVYIDEVDKITRKSENPSITRDV 202

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL L+EG+  S            ++  ++T +ILFI  GAF           
Sbjct: 203 SGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIKQRG 262

Query: 305 -----------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRL 336
                                      P DL     +PE  GR PV   L+ L++     
Sbjct: 263 KGSAMGFGADVRDESDAGVGETFKDLEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALIT 322

Query: 337 ILTDTESNLILQYKELMKTEGIILDFT 363
           ILT  ++ L+ QY+ L + E   LDFT
Sbjct: 323 ILTKPKNALVKQYQRLFELEDTELDFT 349


>gi|164424835|ref|XP_963250.2| hypothetical protein NCU05427 [Neurospora crassa OR74A]
 gi|157070682|gb|EAA34014.2| hypothetical protein NCU05427 [Neurospora crassa OR74A]
          Length = 391

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 135/377 (35%), Gaps = 71/377 (18%)

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           +R L++    PF   +   FT+ GY+G++VE  I  L+  A   V+ +    V       
Sbjct: 12  ARTLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLLIEANYDVKAAEHGIV------- 64

Query: 130 AEERILDALVG--KTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGG 184
               +LD      +  T N R+V  + ++   +   E   + + V D  S          
Sbjct: 65  ----VLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVTVSVKDHRSSRPPPPPNLN 120

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
            S      +                                  ++   V   +I  V   
Sbjct: 121 ISTPGYGPTSTTPSATPGK------------------------VEQYIVDTSNILFVFCG 156

Query: 245 GIVFLDEFDKIVARDSGNGIGVSRE---------GVQRDLLPLVEGSSVS--TKYGSINT 293
             V LD+   ++ R +   IG   E            +D+LP    S +        ++ 
Sbjct: 157 AFVGLDK--TVLRRVAKPSIGFGAEVRNHRGSSMSSSQDILPPELYSHLPHQPPTMPVDL 214

Query: 294 DHILFIASGA-----FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
                 + GA       ++ PADL     +PE+ GR      L  L+  +   ILT+  +
Sbjct: 215 SGGSLASHGAGGFTPLDLASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRN 274

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           +L+ QY  L +T    L FT  ++ A+A+ A    +     GAR L+  MERVL +  + 
Sbjct: 275 SLVAQYTALFETYPSKLYFTRKALYAIAERAAKNET-----GARGLKMEMERVLAEPMYD 329

Query: 404 ASDLQEKTVVIDAEYVR 420
           A       V+I    V+
Sbjct: 330 AP---MPYVLITEGCVK 343


>gi|270002375|gb|EEZ98822.1| hypothetical protein TcasGA2_TC004428 [Tribolium castaneum]
          Length = 590

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 77/260 (29%)

Query: 243 NYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVST-----------KYGS 290
             GIVFLDE DKI           V  EGVQ+ +L ++EG+ V+            +   
Sbjct: 314 QIGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETIQ 373

Query: 291 INTDHILFIASGAFH-----------------------------VSRPADL--------- 312
           ++T +ILF+ASGA++                             VS+ A L         
Sbjct: 374 VDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQTAEE 433

Query: 313 --------LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
                   L ++Q R              FPV V   SLNK+    ILT+ ++ L+ QY+
Sbjct: 434 ENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALLPQYQ 493

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
            L+  +   L FT  ++D++A +A+   +     GAR L+ +ME +L +  F        
Sbjct: 494 RLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPGSGIT 548

Query: 411 TVVIDAEYVRLHIGDFPSET 430
           TV +  EYVR   G    + 
Sbjct: 549 TVHVTEEYVRGESGPVYEKR 568



 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQ 42
           I   L+R+++GQ+ AK+ +++A+ N ++R  
Sbjct: 144 IYDYLNRHVVGQEHAKKVLSVAVYNHYKRIY 174


>gi|289809697|ref|ZP_06540326.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 254

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL GPTG GK
Sbjct: 51  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGK 110

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V    
Sbjct: 111 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY--- 167

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 168 ----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVAAVPPQ 210



 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 30/238 (12%)

Query: 94  YVGRNVEQIIRDLVDVAINIVRESR---RDEVREQASINAEERILDALVGKTATSNTREV 150
           +VG++  ++ + +   ++ I  E      D +RE+    A  R   AL         R  
Sbjct: 2   FVGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH---EIRTH 58

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGRK 205
               +   E + K + + V +    + N D   G  +G  N+     +     ++     
Sbjct: 59  LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA 118

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARD 259
           + + +         + +      D++ + +  +Q  +        GIV++DE DKI  + 
Sbjct: 119 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKS 178

Query: 260 SGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF 304
               I   VS EGVQ+ LL L+EG+  +            ++  ++T  ILFI  GAF
Sbjct: 179 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 236


>gi|326504532|dbj|BAJ91098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 74/308 (24%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  ++            +V +        ES   +L+     +
Sbjct: 109 SNILLLGPTGSGKTLLAKTLARFANVPFVIADATAVTQAGYSGEDVESIVYKLLVAADFN 168

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK----- 287
            ++ +     GI+++DE DK+  +     +   VS EGVQ+ LL + EG+ +S       
Sbjct: 169 VEAAER----GIIYIDEVDKLAKKVGCQEDRRDVSGEGVQQALLKMFEGTVISVPRKRSQ 224

Query: 288 ------YGSINTDHILFIASGAF-----------------------HVSRPADLL----- 313
                    ++T +ILFI  GAF                       H  R   L+     
Sbjct: 225 NGLSHGCVEVDTTNILFICGGAFSDLGKIISERLHHCPFGFGTPIRHELRDYALMNEQSS 284

Query: 314 ----------------PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                           PE  GR P+ V L  L +     ++ + ++ +  QYK+L K   
Sbjct: 285 LFEEIENDDLIAYGLTPEFIGRLPIIVGLTHLTEDQLIQVIREPKNAIGKQYKKLFKMND 344

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK------T 411
           + L  TE+++  +A  A    +     GAR L++++E +L +  F   D   +       
Sbjct: 345 VKLHITENALRLIAKKASVRET-----GARGLRSILEGILTEAMFEIPDDGGEGQEKIIV 399

Query: 412 VVIDAEYV 419
           V++D E V
Sbjct: 400 VLVDEESV 407



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 25/149 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------ADLRDEL 51
           +EI   LD+Y++GQ  AK+ + +A+ N ++R                      A+   EL
Sbjct: 47  KEIRRGLDQYVVGQDKAKKVLCVAVHNHYKRIYSEPSNKSSSQASAGRDAGTAAEDDTEL 106

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              NILL+GPTG GKT +++ LAR A  PF+  + T  T+ GY G +VE I+  L+  A 
Sbjct: 107 EKSNILLLGPTGSGKTLLAKTLARFANVPFVIADATAVTQAGYSGEDVESIVYKLLVAAD 166

Query: 112 NIVRESRR-----DEVREQASINA--EER 133
             V  + R     DEV + A      E+R
Sbjct: 167 FNVEAAERGIIYIDEVDKLAKKVGCQEDR 195


>gi|121997788|ref|YP_001002575.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira
           halophila SL1]
 gi|121589193|gb|ABM61773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Halorhodospira halophila SL1]
          Length = 417

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 43/214 (20%)

Query: 245 GIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGS--SVSTKYGS-----INTDHI 296
           GIV++DE DK+ ARD  G    ++ EG Q+ LL L+EG   +VS+         ++T  I
Sbjct: 193 GIVYIDEIDKLAARDGIGGEPDLAGEGAQQGLLKLLEGRRLTVSSAGRQGSPVTVDTGQI 252

Query: 297 LFIASGAFH------VSRPA----------------------DLLPEIQGRFPVRVHLKS 328
           LFI  GAF         RP                        LLPE+ GR PV   L+ 
Sbjct: 253 LFICGGAFEGLEALAAQRPGVGFTAAADEPAVPGAAAALQRFGLLPELVGRLPVVETLQP 312

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L       ILT+  + L+ QY+ L   +G  L+ T D ++A+A  A    +     GAR 
Sbjct: 313 LATEHLIRILTEPRNALVRQYQVLFARDGCELEITADGLEAVAHRARARGT-----GARG 367

Query: 389 LQTVMERVLEDISFSASDLQEKTV--VIDAEYVR 420
           L+ V+E VL +  F+        V   IDA  V+
Sbjct: 368 LRAVLEEVLLEPMFAVPAAGGDVVRLTIDAAAVQ 401



 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKT 67
           PR +   LD+Y++GQ+ AK+ +++A+ N ++R    A     EL   NILLVGP+G GK+
Sbjct: 81  PRSLRRYLDQYVVGQEQAKKVLSVAVYNHYKRLVAAARGESVELGKSNILLVGPSGTGKS 140

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            ++  LAR    PF+ V+ T  T  GY G + E +I  L+         + R  V
Sbjct: 141 HLAECLARCVEVPFVTVDATTLTASGYAGDDAEAVIGRLLAACDGDPERAARGIV 195


>gi|282891305|ref|ZP_06299807.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498802|gb|EFB41119.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 415

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 74/375 (19%)

Query: 114 VRESRRDEVREQASINAE--ERILDALVGKTATSNTREV----FRKKLRDGEISDKEIDI 167
            ++  R     +     E  ER+ + ++G+     T  V      K++R     +  I+ 
Sbjct: 46  EKKKSRTNHEFKVLKPKEIKERLDEYIIGQDNAKKTISVAVYNHYKRIRSANTDNNAIE- 104

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                  + SN  + G    G   +++  + ++          ++ +    +  D  + +
Sbjct: 105 ------FNKSNVLLFGPTGSGKTLIAKTLANILDVPFTIADATTLTEAG-YVGEDVENII 157

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL +VEG+  +
Sbjct: 158 LRLLQAADYDVSKAE-LGIIYIDEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIAN 216

Query: 286 T-----------KYGSINTDHILFIASGAF------------------------------ 304
                       +Y  +NT++ILFI  GAF                              
Sbjct: 217 VPPKGGRKHPNQEYIKVNTENILFIVGGAFVNMEKIVAKRLGRSTIGFTTKDKETVDPTK 276

Query: 305 -----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
                    P DL+     PE  GRF    +   L  SD   IL+  ++ +  Q+  + +
Sbjct: 277 KSDLLAKVEPEDLIQFGMIPEFVGRFNSIANCNELTVSDLVSILSKPKNAIAKQFMAMFE 336

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVV 413
            EG+ L FTE+++ A+A  A+   +     GAR L+ ++E ++ D+ F    D     +V
Sbjct: 337 MEGVNLQFTEEALAAIAQKAIEAGT-----GARALRMILENIMRDLMFDVPSDPTISEIV 391

Query: 414 IDAEYVRLHIGDFPS 428
           ID + V         
Sbjct: 392 IDYDVVMGKKEPMIK 406



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 10/233 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGV 64
             P+EI   LD YIIGQ +AK+ +++A+ N ++R +     +   E    N+LL GPTG 
Sbjct: 59  LKPKEIKERLDEYIIGQDNAKKTISVAVYNHYKRIRSANTDNNAIEFNKSNVLLFGPTGS 118

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----R 119
           GKT I++ LA +   PF   + T  TE GYVG +VE II  L+  A   V ++       
Sbjct: 119 GKTLIAKTLANILDVPFTIADATTLTEAGYVGEDVENIILRLLQAADYDVSKAELGIIYI 178

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ +     A   I   + G+       ++    + +                 +  N 
Sbjct: 179 DEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKVNTENI 238

Query: 180 -DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP--ELMRDESDRLID 229
             I GGA V +  +          G   K + +V        L + E + LI 
Sbjct: 239 LFIVGGAFVNMEKIVAKRLGRSTIGFTTKDKETVDPTKKSDLLAKVEPEDLIQ 291


>gi|154497946|ref|ZP_02036324.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC
           29799]
 gi|150272936|gb|EDN00093.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC
           29799]
          Length = 438

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI   LD+YIIGQ+DAK A+++A+ N ++R         EL   NILLVGPTG GKT
Sbjct: 65  TPREIREVLDQYIIGQEDAKVALSVAVYNHYKRIYFGGGEDVELQKSNILLVGPTGSGKT 124

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122
             ++ LAR+   PF   + T  TE GYVG +VE I+  LV  A   +  + R     DE+
Sbjct: 125 LFAQTLARILKVPFAIADATTLTEAGYVGDDVENILLRLVQAADFDIELAERGIIYIDEM 184

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DI 181
            + A  +    I   + G+       ++    + +                 +  N   I
Sbjct: 185 DKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQLNTKNILFI 244

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
            GGA  G+  + E        G   +I+   +     +++D
Sbjct: 245 CGGAFDGLEKIIEQRQDRKTMGFGAEIKSKKELDRSAVLKD 285



 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 130/305 (42%), Gaps = 60/305 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G    ++  ++++          ++ +    +  D  + L+ +      
Sbjct: 111 SNILLVGPTGSGKTLFAQTLARILKVPFAIADATTLTEAG-YVGDDVENILLRLVQAADF 169

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I++ E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  +         
Sbjct: 170 DIELAE-RGIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKH 228

Query: 287 ---KYGSINTDHILFIASGAFH----------------------------------VSRP 309
              ++  +NT +ILFI  GAF                                     +P
Sbjct: 229 PHQEFIQLNTKNILFICGGAFDGLEKIIEQRQDRKTMGFGAEIKSKKELDRSAVLKDVQP 288

Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
            DL+     PE+ GR PV   L++LNK     ILT+ ++ L+ QY++L++ + + L F  
Sbjct: 289 HDLIKFGIIPELVGRLPVVTTLRALNKEQLVQILTEPKNALVKQYEKLLEYDNVALRFEP 348

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423
            +++A AD A+       +IGAR L+ V+E  +  I +        T V I A+ +R H 
Sbjct: 349 AALEAAADKAIER-----EIGARGLRAVLEESVTQIMYDVPSDPTITGVTITADTIRDHA 403

Query: 424 GDFPS 428
                
Sbjct: 404 QPIIE 408


>gi|88801526|ref|ZP_01117054.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
 gi|88782184|gb|EAR13361.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii
           23-P]
          Length = 411

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 70/326 (21%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  D +++IE        SN  + G    G   +++  ++++          
Sbjct: 91  HYKRLLQTK-DDDDVEIEK-------SNIVLVGETGTGKTLVAKTIARMLNVPFAIVDAT 142

Query: 211 SVQKCYPELMRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
            + +        ES   +L+       +  Q     GIVF+DE DKI  +     I   V
Sbjct: 143 VLTQAGYVGEDVESILSKLLQTADYDVEKAQR----GIVFIDEIDKIARKGDNPSITRDV 198

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH-----VSR-- 308
           S EGVQ+ LL L+EG+ V+            K+  ++T  ILFIA GAF      +S+  
Sbjct: 199 SGEGVQQALLKLLEGTVVNVAPKGGRKHPEQKFVEVDTKEILFIAGGAFSGIERIISKRL 258

Query: 309 --------------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLI 337
                                     P+DL     +PEI GR PV  ++  L+    R I
Sbjct: 259 NMQAVGFSASLDDDKVDQENLLQYVIPSDLKAFGLIPEIIGRLPVLSYMNPLDAVTLRAI 318

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+ ++ ++ QY +L + +G+     ED+++ + + AV        +GAR L+++ E + 
Sbjct: 319 LTEPKNAIVKQYAKLFRMDGVEFTIEEDALNYIVEKAVTYK-----LGARGLRSLCEAIF 373

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHI 423
            D  +      EK + +   Y    +
Sbjct: 374 TDAMYELPSSDEKILNVTRVYAEGKL 399



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 4/124 (3%)

Query: 3   LTFNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILL 58
           L+ + +   P+EI   LD+YIIGQ + KR++++A+ N ++R     D  D E+   NI+L
Sbjct: 54  LSEDLTLKKPKEIKEFLDQYIIGQDETKRSMSVAVYNHYKRLLQTKDDDDVEIEKSNIVL 113

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           VG TG GKT +++ +AR+   PF  V+ T  T+ GYVG +VE I+  L+  A   V +++
Sbjct: 114 VGETGTGKTLVAKTIARMLNVPFAIVDATVLTQAGYVGEDVESILSKLLQTADYDVEKAQ 173

Query: 119 RDEV 122
           R  V
Sbjct: 174 RGIV 177


>gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 329

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67
           P EI   LD+Y+IGQQ AK+ +++A+ N ++R +      D EL   NILL+GPTG GKT
Sbjct: 68  PHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKSNILLIGPTGSGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V     
Sbjct: 128 LLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQTGIVY---- 183

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 184 ---IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ 226



 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 54/220 (24%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
              +  E   KE DIE+A +     N  + G    G   L+E  ++++          ++
Sbjct: 95  NHYKRLESLGKESDIELAKS-----NILLIGPTGSGKTLLAETLARLLDVPFTIADATTL 149

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI-- 264
            +              D++ + +  +Q  +        GIV++DE DKI  +     I  
Sbjct: 150 TEA--------GYVGEDVENIIQKLLQKCDYDVEKAQTGIVYIDEIDKISRKSDNPSITR 201

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR-----PADLLPEIQGR 319
            VS EGVQ+ LL L+EG+  S                G  H  +      AD L ++ GR
Sbjct: 202 DVSGEGVQQALLKLIEGTVASVP-----------PQGGRKHPQQEFALDHADALDDLIGR 250

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
               + L +                ++ + + L++T GI 
Sbjct: 251 ---DLTLHA--------------EGILHRLRHLLETHGIN 273


>gi|213853069|ref|ZP_03382601.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 201

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+      V++++R  V
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 181



 Score = 41.5 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 14/157 (8%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           D +RE+    A  R   AL         R      +   E + K + + V +    + N 
Sbjct: 46  DIIREEIKEVAPHRERSALPTPH---EIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG 102

Query: 180 DIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           D   G  +G  N+     +     ++     + + +         + +      D++ + 
Sbjct: 103 DTSNGVELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENII 162

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGIG 265
           +  +Q  +        GIV++DE DKI  +     I 
Sbjct: 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSIT 199


>gi|119476203|ref|ZP_01616555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
 gi|119450830|gb|EAW32064.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
          Length = 276

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P EI   LD Y+IGQ+ AK+ +A+A+ N ++R +   + ++  EL   NILLVGPTG G
Sbjct: 69  TPVEIKEILDEYVIGQKRAKKVLAVAVYNHYKRLRYSQEKKEQVELGKSNILLVGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT ++  LARL   PF   + T  TE GYVG +VE II+ L+      V +++   V   
Sbjct: 129 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVY-- 186

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                 + I          S TR+V  + ++   +  K I+  VA     
Sbjct: 187 -----IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTVASVPPQ 229



 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 108 DVAINIVRESRRDEVREQASINAEER---------ILDALVGKTATSNTREVFRKKLRDG 158
           D  +++  +  R+EV+E AS +AE+R         ILD           ++V    + + 
Sbjct: 41  DECVDLCNDIIREEVQESASESAEDRLPTPVEIKEILD--EYVIGQKRAKKVLAVAVYNH 98

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
               +    +        SN  + G    G   L+E  ++++          ++ +    
Sbjct: 99  YKRLRYSQEKKEQVELGKSNILLVGPTGSGKTLLAETLARLLDVPFTIADATTLTEA--- 155

Query: 219 LMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREG 270
                     D++ + +  +Q  +        GIV++DE DKI  +     I   VS EG
Sbjct: 156 -----GYVGEDVENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEG 210

Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF 304
           VQ+ LL L+EG+  S            ++  ++T +ILFI  GAF
Sbjct: 211 VQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTSNILFICGGAF 255


>gi|325109337|ref|YP_004270405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
 gi|324969605|gb|ADY60383.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
          Length = 426

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 9/231 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +PREIV+ LD Y+IGQ+ AKR +++A+ N ++R       +   E+   NILL+GPTG G
Sbjct: 75  TPREIVAHLDEYVIGQERAKRVMSVAVHNHYKRLMNLEADESDVEIEKSNILLLGPTGSG 134

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +ARL   PF   + T  TE GYVG +VE ++  L+  A   V  ++R     D
Sbjct: 135 KTLLAKTMARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGIIFID 194

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ +    +    I   + G+    +  ++    + +          E      D +N  
Sbjct: 195 EIDKIGKTSQNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQIDTTNIL 254

Query: 180 DIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            I GG  VG+ ++ S+   K              ++    L + E D +++
Sbjct: 255 FICGGTFVGLEDIVSKRLGKKSIGFNVVSQEKRDRQRSELLAQAEVDDVLE 305



 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 140/345 (40%), Gaps = 71/345 (20%)

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +E ++     K   S       K+L + E  + +++IE        SN  + G    G  
Sbjct: 84  DEYVIGQERAKRVMSVAVHNHYKRLMNLEADESDVEIEK-------SNILLLGPTGSGKT 136

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDMDTVHRDSIQMVENYGIVF 248
            L++  ++++          ++ +        E+   +L+       ++ Q     GI+F
Sbjct: 137 LLAKTMARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQR----GIIF 192

Query: 249 LDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDH 295
           +DE DKI        I   VS EGVQ+ LL ++EG+  +            +Y  I+T +
Sbjct: 193 IDEIDKIGKTSQNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQIDTTN 252

Query: 296 ILFIASGAF---------HVSRPA------------------------------DLLPEI 316
           ILFI  G F          + + +                               L+PE+
Sbjct: 253 ILFICGGTFVGLEDIVSKRLGKKSIGFNVVSQEKRDRQRSELLAQAEVDDVLEFGLIPEL 312

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
            GR P+   L  L + D   IL + +++++ Q+++L + E   L+FT +++  +A  A  
Sbjct: 313 LGRLPLLSTLSPLAEEDLVRILVEPKNSIVRQFQKLFEMEDASLEFTPEALLEVARAASK 372

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
                 D GAR L+  +E V+ D+ +   D    K  V+ AE VR
Sbjct: 373 R-----DTGARSLRAALETVIFDVLYDLPDKGVGKKFVVTAEMVR 412


>gi|296271573|ref|YP_003654204.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095748|gb|ADG91698.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter
           nitrofigilis DSM 7299]
          Length = 415

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 57/299 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           V +   + SN  + G    G   L++  +K+M          ++ +        ES    
Sbjct: 97  VKNVELEKSNIMLIGPTGSGKTLLAKSLAKIMDVPFAVADATALTEAGYVGEDVES---- 152

Query: 229 DMDTVHRDSIQMVEN--YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSV 284
            +  +   +   +E    GIV++DE DKI  +     +G  VS EGVQ+ LL ++EG+ V
Sbjct: 153 ILSRLLAAADFDLEKAKRGIVYIDEIDKIANKSESATSGRDVSGEGVQQGLLKILEGAEV 212

Query: 285 -----------STKYGSINTDHILFIASGAFHVSRPAD---------------------- 311
                      S +    +T H+LFI  GAF   R  +                      
Sbjct: 213 YVPVKGSRKNSSAETIIFDTTHVLFICGGAFVGLRKDENKEKSTVMGFLNKDNKQKDKKD 272

Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
                     L+PE  GR PV   L  L+K D   +L + ++ +  QY+ L + +G+ L 
Sbjct: 273 IEAKELISFGLIPEFIGRIPVIAELNKLSKDDLIRVLKEPKNAITKQYEILFELDGVDLK 332

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           F + ++D +A++A        D+GAR L+ ++E+++  + ++    +   + VI  EY+
Sbjct: 333 FDDKALDEIANIAYE-----KDVGARGLRGIIEKLMLPLQYTIPSEENLGSCVITQEYI 386



 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 69/114 (60%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I   LD Y+IGQ DAK+ +A+AL N ++R   P     EL   NI+L+GPTG GKT 
Sbjct: 60  PIKIKEHLDEYVIGQDDAKKVLAVALYNHYKRIDKPIVKNVELEKSNIMLIGPTGSGKTL 119

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + +++R  V
Sbjct: 120 LAKSLAKIMDVPFAVADATALTEAGYVGEDVESILSRLLAAADFDLEKAKRGIV 173


>gi|254785701|ref|YP_003073130.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter
           turnerae T7901]
 gi|237686761|gb|ACR14025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Teredinibacter turnerae T7901]
          Length = 431

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 73/342 (21%)

Query: 128 INAEERILDALVGKTATSNTRE--VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
              ++ + D ++G+     T    V+   LR      + ++   ++   D SN  + G +
Sbjct: 62  EAIKKHLDDYVIGQEQAKETLAIAVYNHYLRLMNTRRETLEESDSNIELDKSNVLMVGPS 121

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--- 242
             G   +    +K++G         S+ +              D+D++    +   E   
Sbjct: 122 GTGKTLIVRSLAKILGVPFVSADATSLTQA--------GYVGDDVDSIIHRLLDAAEGDV 173

Query: 243 ---NYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVST----------K 287
               +GIV++DE DKI  R  G      VS EGVQ+ LL LVEG+              +
Sbjct: 174 NQAQWGIVYIDEIDKIARRGGGTTSVRDVSGEGVQQALLKLVEGTEQKVSKSGRRRENSE 233

Query: 288 YGSINTDHILFIASGA--------FHVSRPAD---------------------------- 311
              ++T +ILFI  GA         +  +P D                            
Sbjct: 234 EVIVDTRNILFIVGGAFPGLEELICNRVKPRDTSIGFHSRTENAKPDVNELLENLLPDDL 293

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
               L+PE  GRFP+   L+ L+      ILT+  + L+ Q+++L   +G  L+ T+D++
Sbjct: 294 QGFGLIPEFIGRFPITTFLQELDVEALLKILTEPRNALVKQFRQLFAYQGKTLEMTDDAL 353

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409
             +A+ AV+ N+     GAR L++V+E  L    F    LQ 
Sbjct: 354 TFIAEEAVSRNT-----GARGLRSVLEAALHKTMFEMPSLQG 390



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 7/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVG 60
           +P  I   LD Y+IGQ+ AK  +AIA+ N + R           +D   EL   N+L+VG
Sbjct: 60  TPEAIKKHLDDYVIGQEQAKETLAIAVYNHYLRLMNTRRETLEESDSNIELDKSNVLMVG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           P+G GKT I R LA++ G PF+  + T  T+ GYVG +V+ II  L+D A   V +++
Sbjct: 120 PSGTGKTLIVRSLAKILGVPFVSADATSLTQAGYVGDDVDSIIHRLLDAAEGDVNQAQ 177


>gi|29840676|ref|NP_829782.1| ATP-dependent protease ATP-binding subunit [Chlamydophila caviae
           GPIC]
 gi|33300937|sp|Q821L9|CLPX_CHLCV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|29835026|gb|AAP05660.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           caviae GPIC]
          Length = 421

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R +    +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYNVARAERGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 188 EIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYIRVNTENIL 247

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K            S +     L + E++ LI
Sbjct: 248 FIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQEDRDHLLTKVETEDLI 297



 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 121/313 (38%), Gaps = 65/313 (20%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 109 KHVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 167

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +      ++   E  GI+++DE DKI    +   I   VS EGVQ+ LL ++EG++ +  
Sbjct: 168 LLQAADYNVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVP 226

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 227 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQEDRDH 286

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E 
Sbjct: 287 LLTKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEEN 346

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F +D++ A     +   + +   GAR L  ++E +L D+ F              E
Sbjct: 347 VKLIFEKDALYA-----IAKKAKLAKTGARALGMILENLLRDLMFEIPSDP------TVE 395

Query: 418 YVRLHIGDFPSET 430
            +R+         
Sbjct: 396 AIRIQEDTILENK 408


>gi|89897900|ref|YP_515010.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           felis Fe/C-56]
 gi|123735930|sp|Q256C3|CLPX_CHLFF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89331272|dbj|BAE80865.1| ATP-dependent Clp endopeptidase ATP-binding, ATP-binding subunit
           [Chlamydophila felis Fe/C-56]
          Length = 421

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R +    +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDQYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 188 EIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYIRVNTENIL 247

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K            S +     L + E++ LI
Sbjct: 248 FIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLI 297



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 120/313 (38%), Gaps = 65/313 (20%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 109 KHVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 167

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL ++EG++ +  
Sbjct: 168 LLQAADYDVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVP 226

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 227 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDH 286

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + +I QY EL   E 
Sbjct: 287 LLTKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIIKQYIELFSEEN 346

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ++++ A     +   + +   GAR L  ++E +L D+ F              E
Sbjct: 347 VKLIFEKEALYA-----IAKKAKLAKTGARALGMILENLLRDLMFEVPSDP------TVE 395

Query: 418 YVRLHIGDFPSET 430
            +R+         
Sbjct: 396 AIRIQEDTILENK 408


>gi|15834703|ref|NP_296462.1| ATP-dependent protease ATP-binding subunit [Chlamydia muridarum
           Nigg]
 gi|270284869|ref|ZP_06194263.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum Nigg]
 gi|270288896|ref|ZP_06195198.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum Weiss]
 gi|301336248|ref|ZP_07224450.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia
           muridarum MopnTet14]
 gi|13878445|sp|Q9PLM1|CLPX_CHLMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|7190113|gb|AAF38960.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Chlamydia muridarum Nigg]
          Length = 419

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 7/229 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y++GQ+ AK+ +++A+ N ++R +    D +      N+LL+GPTG G
Sbjct: 67  LTPKEIKRHIDSYVVGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGIIYID 186

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ +     A   I   + G+       ++    + +                 +  N  
Sbjct: 187 EIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYIRVNTENIL 246

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            I GGA V +  +          G  ++  ++V      L + E++ LI
Sbjct: 247 FIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTDRDRLLAKVETEDLI 295



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 59/313 (18%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++    S   SN  + G    G   +++  +K++          ++ +    +  D  + 
Sbjct: 105 MQDKQVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENI 163

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++ +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL ++EG+  
Sbjct: 164 VLRLLQAADYDVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTVA 222

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------HVSRPADL----- 312
           +            +Y  +NT++ILFI  GAF                  S   DL     
Sbjct: 223 NIPPKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTDR 282

Query: 313 -----------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355
                            +PE  GRF   V+ + L   +   ILT+  + ++ QY EL   
Sbjct: 283 DRLLAKVETEDLIAFGMIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFAE 342

Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVI 414
           E + L F ++++ A+A  A    +     GAR L  ++E +L D+ F    D   +++ I
Sbjct: 343 ENVKLIFEKEALYAIAQKAKQAKT-----GARALGMILENLLRDLMFEIPSDPTVESIRI 397

Query: 415 DAEYVRLHIGDFP 427
           + + +  +     
Sbjct: 398 EEDTITQNKSPVI 410


>gi|312074325|ref|XP_003139920.1| hypothetical protein LOAG_04335 [Loa loa]
 gi|307764922|gb|EFO24156.1| hypothetical protein LOAG_04335 [Loa loa]
          Length = 364

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 81/316 (25%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G + VG   L+++ +K++         + +  C   ++        D+DTV 
Sbjct: 37  GKSNILLMGPSGVGKTYLTQILAKILD--------VPIAMCDCTVLTQSGYVGDDVDTVI 88

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVS 285
           +  +   +        GIVFLDEFDKI +    +S +   V   GVQ+  L LVEG+ V 
Sbjct: 89  QKLLANADGDTDAAQRGIVFLDEFDKISSSLDFESRSFRDVGGRGVQQAFLKLVEGTVVK 148

Query: 286 TKY-------GSINTDHILFIASGAFH--------------------------------- 305
            K          ++T +ILFIASGAF+                                 
Sbjct: 149 VKQPGSNGTRVDVDTTNILFIASGAFNNLDRIVSQRLHKKLVGFGAGKDEELCCHYLTGK 208

Query: 306 ----VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346
               VS+  D               ++PE+ GRFPV V   SL +     I+ + +S+++
Sbjct: 209 DETKVSKDRDDLLKQADHIDLIKYGMVPELVGRFPVLVPFTSLTEELLVRIMKEPKSSIV 268

Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406
            Q ++    + I L FT+ ++  +A  A    +     GAR L+++ E+VL D  +    
Sbjct: 269 SQAEKQFLLDDIRLCFTDCALKEIARTAAQKGT-----GARALRSITEKVLLDAKYDLPG 323

Query: 407 LQEKTVVIDAEYVRLH 422
            +   +VIDA  V+  
Sbjct: 324 TEIHKLVIDANVVKGK 339



 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           R     D   +L   NILL+GP+GVGKT +++ LA++   P    + T  T+ GYVG +V
Sbjct: 25  RALTEMDKDSDLGKSNILLMGPSGVGKTYLTQILAKILDVPIAMCDCTVLTQSGYVGDDV 84

Query: 100 EQIIRDLVDVAINIVRESRRDEV 122
           + +I+ L+  A      ++R  V
Sbjct: 85  DTVIQKLLANADGDTDAAQRGIV 107


>gi|293977811|ref|YP_003543241.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Sulcia muelleri DMIN]
 gi|292667742|gb|ADE35377.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus
           Sulcia muelleri DMIN]
          Length = 344

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 56/301 (18%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           A    D SN  + G    G   +++  SK +          S+ +    +  D    L  
Sbjct: 50  AKVEIDKSNILMIGDTGTGKTLIAKSISKFLNVPFTIVDATSLTEAG-YVGEDVESILTK 108

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +      +I + E  GIVF+DE DKI  ++    I   VS EGVQ+ LL ++EGS V+  
Sbjct: 109 LLQSANYNIALAEK-GIVFIDEIDKISRKNDNPSITRDVSGEGVQQALLKILEGSIVNVP 167

Query: 287 ----------KYGSINTDHILFIASGAF-------------------------------- 304
                     K   +NT +ILFIA GAF                                
Sbjct: 168 PNVGRKHPEQKLIKLNTKNILFIAGGAFEGLKNIISNRLNLSTIGFKKNVSIDGKDLLNF 227

Query: 305 ---HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
              H  +   L+PE+ GR P+  +L SL +   + IL +  +++I QYKEL   + I L 
Sbjct: 228 VSSHDLKKFGLIPELIGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLK 287

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           FT  +ID + D A+ L      +GAR L+T+ E++++D  F+  DL +++++ID   ++L
Sbjct: 288 FTYSAIDLIVDKAIKL-----SLGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 341

Query: 422 H 422
            
Sbjct: 342 K 342



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 70/115 (60%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SPREI   LD+Y+IGQ+DAK+ +++A+ N ++R       + E+   NIL++G TG GKT
Sbjct: 11  SPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGDTGTGKT 70

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            I++ +++    PF  V+ T  TE GYVG +VE I+  L+  A   +  + +  V
Sbjct: 71  LIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSANYNIALAEKGIV 125


>gi|34762746|ref|ZP_00143735.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887596|gb|EAA24676.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 258

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64
             P EI ++LD Y++GQ +AK+ +++A+ N ++R        D  EL   N+LLVGPTG 
Sbjct: 74  LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GKT +++ LAR+   PF   + T  TE GYVG +VE ++  L+      +  + R
Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQACNYDIPNAER 188



 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++ +    D  ++++        SN  + G    G   L++  ++++          
Sbjct: 104 HYKRILNNGQDDDGVELQK-------SNVLLVGPTGSGKTLLAQTLARILNVPFAIADAT 156

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           ++ +    +  D  + L+ +       I   E  GI+++DEFDKI  +     I   VS 
Sbjct: 157 TLTEAG-YVGDDVENVLVRLIQACNYDIPNAE-RGIIYIDEFDKIARKSENVSITRDVSG 214

Query: 269 EGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIAS 301
           EGVQ+ LL ++EG+   V  + G          I+T +IL I  
Sbjct: 215 EGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEIDTKNILLIVG 258


>gi|46190461|ref|ZP_00121496.2| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Bifidobacterium longum DJO10A]
 gi|189439547|ref|YP_001954628.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum DJO10A]
 gi|189427982|gb|ACD98130.1| ATP-dependent Clp protease ATPase subunit [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 148/380 (38%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDA---LVGKTATSNTREVFRKKLRDGE 159
            +  + VA+    +    E++E A        LD      G+T     +    +      
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHGGQTGKQAKQSAPAQTRATRR 135

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            SD   D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 NSDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + K V++D   V 
Sbjct: 418 FQLPSLDDVKQVIVDKASVE 437



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAK 123

Query: 44  ---PADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
              PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDI 293


>gi|170516913|gb|ACB15392.1| ClpX [Bifidobacterium longum]
          Length = 467

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 150/380 (39%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT--SNTREVFRKKLRDGEI 160
            +  + VA+    +    E++E A        LD   G +       ++    + R    
Sbjct: 107 AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTGKQAKQSVPTQTRAARR 160

Query: 161 SDKEI-DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           S+  + D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 161 SNDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 211

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 212 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 267

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 268 VQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 327

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 328 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 387

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 388 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 442

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + + V++D   V 
Sbjct: 443 FQLPSLDDVRQVIVDKASVE 462



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 89  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAK 148

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                               E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 149 QSVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 208

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 209 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 268

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 269 QQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318


>gi|67458611|ref|YP_246235.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis
           URRWXCal2]
 gi|75536923|sp|Q4UMY8|CLPX_RICFE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|67004144|gb|AAY61070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rickettsia
           felis URRWXCal2]
          Length = 425

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P++I + L+ Y++GQ  AK+ +A+A+ N ++R +     +   EL   NILL+GPTG G
Sbjct: 62  TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE I+  L+  A   + ++++     D
Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQKGIIYID 181

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           EV + A  +    I   + G+       ++    +            +      D SN  
Sbjct: 182 EVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNIL 241

Query: 181 IPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTVH 234
              G +   ++      +   S    +        +  +    L  ++  +  +  + + 
Sbjct: 242 FICGGAFMGIDSIITARTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIG 301

Query: 235 RDSIQMVENYGIVFLDEFDK 254
           R  I       +  LDE DK
Sbjct: 302 RLPI-------VTTLDELDK 314



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 134/330 (40%), Gaps = 66/330 (20%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K+L   +  + ++++       + SN  + G    G   L++  +K++          
Sbjct: 91  HYKRLEYVQSGNNDVEL-------NKSNILLIGPTGSGKTLLAQTLAKILDVPFTMADAT 143

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +      +I   +  GI+++DE DKI  +     I   VS 
Sbjct: 144 SLTEAG-YVGEDVENILLRLLIAAEFNIAKAQK-GIIYIDEVDKIARKSENPSITRDVSG 201

Query: 269 EGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF------------- 304
           EGVQ+ LL ++EG+  S             +  ++T +ILFI  GAF             
Sbjct: 202 EGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQLDTSNILFICGGAFMGIDSIITARTNH 261

Query: 305 --------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                            L+PE  GR P+   L  L+K     IL
Sbjct: 262 SSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGLIPEFIGRLPIVTTLDELDKDALITIL 321

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T  ++ ++ QY++  + +   L     +++A+A+ A+   +     GAR L++++E +L 
Sbjct: 322 TKPKNAIVKQYQKQFELDDAELVIEAAALEAIAEKALAKKT-----GARGLRSILEHLLL 376

Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPS 428
           D  +  ++L+++ V I  E V   +    +
Sbjct: 377 DSMYKVAELKKQRVTITKEVVNGLVEPIMT 406


>gi|319789499|ref|YP_004151132.1| ATPase associated with various cellular activities AAA_5
           [Thermovibrio ammonificans HB-1]
 gi|317114001|gb|ADU96491.1| ATPase associated with various cellular activities AAA_5
           [Thermovibrio ammonificans HB-1]
          Length = 560

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 41/419 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I +E+ + ++GQ +  + V  A+      +   +    +    NILLVGPTG GKT ++R
Sbjct: 13  ISAEISKELVGQDEGVKKVVTAICE--NLESYLSGNSRKTAKNNILLVGPTGSGKTELAR 70

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
           R++ L   PF++V +T +T  GY GR+ + I+ +          +    +   +A+   E
Sbjct: 71  RISELLDLPFVRVNITDYTLTGYKGRDPQSIVLE--------DFDRVLQKGAYRAAEVLE 122

Query: 132 ERILDALVG--KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           E+                  + R K RD  +   ++  E+  +   +  F+        +
Sbjct: 123 EKRRKYCGAVYLLKNLKEELLKRGKGRDSLLFYLKVTAELFAS---MLFFEKDRVVEFLL 179

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDMDTVHRDSIQMV-ENYGI 246
              S        + + +    S+ +          +   L+D  +   +  Q   + +GI
Sbjct: 180 SKYS------FKNPKHRDRLKSLLEQLARKFEGMKKLTPLLDGCSGKVEKRQFSHKPFGI 233

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----STKYGSINTDHILFIASG 302
           VF+DE DKI+ ++S N        +Q  LL +VEG+ V      +  +++T H+ FI +G
Sbjct: 234 VFIDEIDKILIQESENSFYT---WLQNFLLTMVEGTVVTGETEREVKTMDTSHLTFIFAG 290

Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362
           AF  + P D  PE +GR  V V    L   +   I        +  +   M    + +  
Sbjct: 291 AFSQTSPDDFFPEFRGRLNVTVKFNELGLEELEQIAR------LKDFAGFMG--DLFVKV 342

Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420
             D+  A+A+ A  LN     +GARR+  V+ +V   +S   A       VV+D  YV+
Sbjct: 343 EPDAYKAVAEEAFRLNRDCY-LGARRVDEVISKVNAALSRELALGRLSLPVVVDYSYVK 400


>gi|296453942|ref|YP_003661085.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183373|gb|ADH00255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 459

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 148/380 (38%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDA---LVGKTATSNTREVFRKKLRDGE 159
            +  + VA+    +    E++E A        LD      G+T     +    +      
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHGGQTGKQAKQSAPAQTRATRR 135

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            SD   D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 NSDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + K V++D   V 
Sbjct: 418 FQLPSLDDVKQVIVDKASVE 437



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAK 123

Query: 44  ---PADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
              PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDI 293


>gi|213692574|ref|YP_002323160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524035|gb|ACJ52782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458726|dbj|BAJ69347.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 459

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 148/380 (38%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDA---LVGKTATSNTREVFRKKLRDGE 159
            +  + VA+    +    E++E A        LD      G+T     +    +      
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTGEQAKQSAPAQTRATRR 135

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            SD   D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 NSDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + K V++D   V 
Sbjct: 418 FQLPSLDDVKQVIVDKASVE 437



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGEQAK 123

Query: 44  ---PADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
              PA  R            E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDTAQMDTRGILFICGGAFVGLTDI 293


>gi|291522586|emb|CBK80879.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus
           catus GD/7]
          Length = 422

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 58/241 (24%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++++    +            GI+++DE DKI  + S   I   VS EGVQ  LL L+E
Sbjct: 142 DVESIITKLVMKANGNIDKAQRGIIYIDEIDKIGRKGSNPSITRDVSGEGVQAALLKLIE 201

Query: 281 GSSV---------STKYGSI--NTDHILFIASGAFH------------------------ 305
           G+ V         +   G+I  +T ++LFI  GAF                         
Sbjct: 202 GAEVTFPANGGRKNPSGGNIPFDTSNVLFIVGGAFEGMFDDNDKQSSSIGFINSASCKTA 261

Query: 306 --------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                     +   ++PE  GRFPV   L+ L+ +D + +LT+ + NL+ +YK L+K + 
Sbjct: 262 DEHEITAEKLKAFGMMPEFIGRFPVIAQLEELSTNDLKRVLTEPKDNLVDEYKALLKADN 321

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVID 415
           + L F E+++D +A  A         IGAR L+++ME ++ DI F A      +   VID
Sbjct: 322 VNLVFEEEALDKIAQKAAEKK-----IGARGLRSIMENMMLDIMFDAPSYHSFSPQKVID 376

Query: 416 A 416
            
Sbjct: 377 E 377



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P++I+S L+ YIIGQ+ AK+ +++A+ N  +R     D   ++   NILL GPTG GKT
Sbjct: 55  TPKKIMSILNDYIIGQEKAKKILSVAVYNHKKRLY---DKTGKIRKSNILLAGPTGSGKT 111

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            +++ +A++   PF+ V  T  T+ GYVG +VE II  LV  A   + +++R  +     
Sbjct: 112 YLAQTIAKVLDVPFVIVNATSLTQSGYVGDDVESIITKLVMKANGNIDKAQRGIIY---- 167

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               + I       +  S TR+V  + ++   +   E   EV   ++        G    
Sbjct: 168 ---IDEIDKIGRKGSNPSITRDVSGEGVQAALLKLIE-GAEVTFPANGGRKNPSGGNIPF 223

Query: 188 GILNLSELFSKVMGSGRKKKIR 209
              N+  +             +
Sbjct: 224 DTSNVLFIVGGAFEGMFDDNDK 245


>gi|62185491|ref|YP_220276.1| ATP-dependent protease ATP-binding subunit [Chlamydophila abortus
           S26/3]
 gi|329943258|ref|ZP_08292032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci Cal10]
 gi|332287837|ref|YP_004422738.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
 gi|81312361|sp|Q5L4W6|CLPX_CHLAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62148558|emb|CAH64329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila
           abortus S26/3]
 gi|313848409|emb|CBY17413.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila
           psittaci RD1]
 gi|325506574|gb|ADZ18212.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
 gi|328814805|gb|EGF84795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci Cal10]
 gi|328915098|gb|AEB55931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           psittaci 6BC]
          Length = 421

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D+Y++GQ+ AK+ +A+A+ N ++R +    +        N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 188 EIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYIRVNTENIL 247

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K            S +     L + E++ LI
Sbjct: 248 FIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLI 297



 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 120/313 (38%), Gaps = 65/313 (20%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 109 KHVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 167

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL ++EG++ +  
Sbjct: 168 LLQAADYDVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVP 226

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 227 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDH 286

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E 
Sbjct: 287 LLTKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEEN 346

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + L F ++++ A     +   + +   GAR L  ++E +L D+ F              E
Sbjct: 347 VKLIFEKEALYA-----IAKKAKLAKTGARALGMILENLLRDLMFEIPSDP------TVE 395

Query: 418 YVRLHIGDFPSET 430
            +R+         
Sbjct: 396 AIRIQEDTILENK 408


>gi|261749489|ref|YP_003257175.1| ATP-dependent Clp protease ATP-binding subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497582|gb|ACX84032.1| ATP-dependent protease Clp, ATPase subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 407

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 77/330 (23%)

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
              + +  + +++IE        SN  + G    G   L++  S+++      KI  ++ 
Sbjct: 98  HFLNNKEGNNDVEIEK-------SNILLIGNTGTGKTLLAKSISRLL------KIPFTIA 144

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--G 265
                   +      D++++    +Q           GIVF+DE DKI  + +   I   
Sbjct: 145 DATAL--TEAGYVGEDVESILTRLLQSANYDVNSAEKGIVFIDEIDKISRKKNNPSITRD 202

Query: 266 VSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------- 304
           VS EGVQ+ LL ++EGS ++            K  SINT++ILFIA G F          
Sbjct: 203 VSGEGVQQALLKILEGSIINVPPQGGRKHPDQKMISINTENILFIAGGTFDGIENIISDR 262

Query: 305 ---------------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                      H  R   L+PE+ GRFP+  +L SL+K   + I
Sbjct: 263 IHQFSIGFVNPNKKNKNEKNFLKNITAHDLRKFGLIPELIGRFPIITYLNSLDKIMLKKI 322

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           L + ++ LI QYK+L   + I ++ T++ +D + D  + L      +GAR L++  E++ 
Sbjct: 323 LIEPKNALIKQYKKLFDLDQISIEVTDEVLDIIIDKTLELG-----LGARGLRSFCEKIF 377

Query: 398 EDISFSASDLQEKTVV-IDAEYVRLHIGDF 426
            D  F+  ++ +  ++ ID E V       
Sbjct: 378 VDYMFNIEEINKNQILNIDKEMVIEKFNGL 407



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLVGPTGVGKTAI 69
            LD+Y+IGQ +AK+ +++A+ N ++R          +   E+   NILL+G TG GKT +
Sbjct: 70  FLDKYVIGQNEAKKVISVAVYNHYKRVIHFLNNKEGNNDVEIEKSNILLIGNTGTGKTLL 129

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           ++ ++RL   PF   + T  TE GYVG +VE I+  L+  A   V  + +  V
Sbjct: 130 AKSISRLLKIPFTIADATALTEAGYVGEDVESILTRLLQSANYDVNSAEKGIV 182


>gi|61211644|sp|Q8G5R1|CLPX_BIFLO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
          Length = 472

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 151/380 (39%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEI 160
            +  + VA+    +    E++E A        LD   G +   +   ++    + R    
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTSKQAKQSVPTQTRATRR 135

Query: 161 SDKEI-DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           S+  + D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 SNDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + + V++D   V 
Sbjct: 418 FQLPSLDDVRQVIVDKASVE 437



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAK 123

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                               E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293


>gi|23465516|ref|NP_696119.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium
           longum NCC2705]
 gi|23326176|gb|AAN24755.1| ATP-dependent specificity component of the Clp protease
           [Bifidobacterium longum NCC2705]
          Length = 497

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 151/380 (39%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEI 160
            +  + VA+    +    E++E A        LD   G +   +   ++    + R    
Sbjct: 107 AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTSKQAKQSVPTQTRATRR 160

Query: 161 SDKEI-DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           S+  + D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 161 SNDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 211

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 212 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 267

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 268 VQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 327

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 328 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 387

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 388 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 442

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + + V++D   V 
Sbjct: 443 FQLPSLDDVRQVIVDKASVE 462



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 89  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAK 148

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                               E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 149 QSVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 208

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 209 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 268

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 269 QQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318


>gi|312210457|emb|CBX90544.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 138/380 (36%), Gaps = 34/380 (8%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +   N+L++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VEQ +  L   +
Sbjct: 190 IEKSNVLILGPTGVGKTLMCKTLAKTLGIPISMSDCTTFTQAGYIGDDVEQCVARLFSAS 249

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              +  +     +    ++  ++I  A +          V +  L+  E +  ++  +  
Sbjct: 250 GYDLEATE----QGIIVLDEIDKIAGAKLSYGKDVGGEGVQQALLKIIEGTTVQVQAKPE 305

Query: 171 DTSSDI-------SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            +S+         S  D+    +           +V    R   I       +  L +  
Sbjct: 306 RSSTRPGGASGRGSPVDMYQSPTPPPPPPGGAKGEVFNI-RTDNILFICTGAFSNLHK-- 362

Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
               I +D     S+          +   +   A D     G       +D  P      
Sbjct: 363 ----IILDRKSMGSMGFG-----ASIRSSNAHAAADGVMLTGAEAAAFTKDA-PFFVPQE 412

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLIL 338
                                   +PADL     +PE+ GR P    + +L++     +L
Sbjct: 413 TEPSNPFAPRPLRREAKVNVLDHVQPADLQKYGMIPELIGRIPTVCAVSALDEGALVRVL 472

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T+ + +L+ Q +       + L FT  ++  +A  A  + +     GAR L+ V++++L 
Sbjct: 473 TEPKDSLVRQEEHKAHLRNMELRFTTGALREIARKASKMGT-----GARGLRHVVDQLLL 527

Query: 399 DISFSASDLQEKTVVIDAEY 418
              +       K +++  + 
Sbjct: 528 QAKYETPGSSVKHILVTQDV 547



 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
           + + +P+ +   LD++++ Q  AK  +++A+   + R Q     RDE
Sbjct: 75  STHITPKALRQHLDQFVVDQDRAKVVLSVAVHEHYLRIQEIQRQRDE 121


>gi|239621943|ref|ZP_04664974.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|312132956|ref|YP_004000295.1| clpx [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482287|ref|ZP_07941308.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688892|ref|YP_004208626.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690867|ref|YP_004220437.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|239515134|gb|EEQ55001.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|291517063|emb|CBK70679.1| ATP-dependent Clp protease ATP-binding subunit ClpX
           [Bifidobacterium longum subsp. longum F8]
 gi|311773938|gb|ADQ03426.1| ClpX [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916303|gb|EFV37704.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455723|dbj|BAJ66345.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460228|dbj|BAJ70848.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 472

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 150/380 (39%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT--SNTREVFRKKLRDGEI 160
            +  + VA+    +    E++E A        LD   G +       ++    + R    
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTGKQAKQSVPTQTRAARR 135

Query: 161 SDKEI-DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           S+  + D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 SNDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + + V++D   V 
Sbjct: 418 FQLPSLDDVRQVIVDKASVE 437



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAK 123

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                               E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293


>gi|330443930|ref|YP_004376916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
 gi|328807040|gb|AEB41213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pecorum E58]
          Length = 422

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y++GQ+ AK+ +A+A+ N ++R +    +        N+LL+GPTG G
Sbjct: 69  LTPKEIKKHIDEYVVGQERAKKTIAVAVYNHYKRIRALLHNKHVSYGKSNVLLLGPTGSG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 129 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQSADYDVSRAERGIIYID 188

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 189 EIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYIRVNTENIL 248

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K        +   S +     L + E++ LI
Sbjct: 249 FIVGGAFVNLDKIIAKRLGKTTIGFSDDQADFSQKDRDHLLAKVETEDLI 298



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 60/311 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 110 KHVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 168

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL ++EG++ +  
Sbjct: 169 LLQSADYDVSRAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIIEGTTANVP 227

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 228 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADFSQKDRDH 287

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E 
Sbjct: 288 LLAKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYVELFAEEN 347

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + L F ++++ A     +   +     GAR L  ++E +L D+ F    D   +++ I  
Sbjct: 348 VKLVFEKEALYA-----IAKKAKQAKTGARALGMILENLLRDLMFEVPSDPTVESIRIQE 402

Query: 417 EYVRLHIGDFP 427
             +  +     
Sbjct: 403 NTIAENKAPLI 413


>gi|315636711|ref|ZP_07891941.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
 gi|315479026|gb|EFU69729.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
          Length = 276

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 10/216 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65
           +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R     ++ D  EL   N+LL+GPTG G
Sbjct: 61  TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQNEINDDIELNKSNVLLIGPTGSG 120

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ +++    P    + T  TE GYVG +VE ++  LV  A   ++++ R     D
Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAERGIIFID 180

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           EV + A ++    I   + G+       ++    + +                 D +N  
Sbjct: 181 EVDKIARMSENRSITRDVSGEGVQQALLKIVEGSVVNVPPKGGRKHPGQDALQVDTTNIL 240

Query: 180 DIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQ 213
            I GGA  G+ ++   +  + V+G  + KKI+   +
Sbjct: 241 FICGGAFDGLEDIIKKKQGANVLGFNQDKKIKKQRR 276



 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 20/220 (9%)

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           N  ++    E++ +     +  + + ++G+        V             EI+ ++  
Sbjct: 47  NDKKDEELKEIKIKTPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQNEINDDIEL 106

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
             S++      G    G   L++  SK +          S+ +    +  D  + +  + 
Sbjct: 107 NKSNVLLI---GPTGSGKTLLAQTISKYLDVPLAIADATSLTEAG-YVGDDVENVVTRLV 162

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYG 289
                 I+  E  GI+F+DE DKI        I   VS EGVQ+ LL +VEGS V+    
Sbjct: 163 QAANGDIKKAE-RGIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGSVVNVPPK 221

Query: 290 -----------SINTDHILFIASGAFHVSRPADLLPEIQG 318
                       ++T +ILFI  GAF      D++ + QG
Sbjct: 222 GGRKHPGQDALQVDTTNILFICGGAFDGLE--DIIKKKQG 259


>gi|269302632|gb|ACZ32732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila
           pneumoniae LPCoLN]
          Length = 421

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +A+A+ N ++R +    + +      N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 188 EIDKIGRTTANVSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYIRVNTENIL 247

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K        +  +S +     L + E++ LI
Sbjct: 248 FIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLI 297



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 60/311 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 109 KQVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 167

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL +VEG++ +  
Sbjct: 168 LLQAADYDVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIVEGTTANVP 226

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 227 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDH 286

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E 
Sbjct: 287 LLAKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFAEEN 346

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + L F ++++ A     +   +     GAR L  ++E +L D+ F    D   + + I  
Sbjct: 347 VKLVFKKEALYA-----IAKKAKQAKTGARALGMILENLLRDLMFEIPSDPTVEAIHIQE 401

Query: 417 EYVRLHIGDFP 427
           + +  +     
Sbjct: 402 DTIAENKAPII 412


>gi|15618755|ref|NP_225041.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila
           pneumoniae CWL029]
 gi|15836379|ref|NP_300903.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae J138]
 gi|16752193|ref|NP_445560.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae AR39]
 gi|33242206|ref|NP_877147.1| ATP-dependent protease ATP-binding subunit [Chlamydophila
           pneumoniae TW-183]
 gi|6225166|sp|Q9Z760|CLPX_CHLPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4377161|gb|AAD18984.1| CLP Protease ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189936|gb|AAF38799.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX
           [Chlamydophila pneumoniae AR39]
 gi|8979220|dbj|BAA99054.1| CLP protease ATPase [Chlamydophila pneumoniae J138]
 gi|33236717|gb|AAP98804.1| ATP-binding subunit of Clp protease [Chlamydophila pneumoniae
           TW-183]
          Length = 421

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 8/230 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65
            +P+EI   +D Y+IGQ+ AK+ +A+A+ N ++R +    + +      N+LL+GPTG G
Sbjct: 68  LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT I++ LA++   PF   + T  TE GYVG +VE I+  L+  A   V  + R     D
Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYDVARAERGIIYID 187

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ +     A   I   + G+       ++      +                 +  N  
Sbjct: 188 EIDKIGRTTANVSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYIRVNTENIL 247

Query: 181 IPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
              G +   L+  +++   K        +  +S +     L + E++ LI
Sbjct: 248 FIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLI 297



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 60/311 (19%)

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              S   SN  + G    G   +++  +K++          ++ +    +  D  + ++ 
Sbjct: 109 KQVSYGKSNVLLLGPTGSGKTLIAKTLAKILDVPFTIADATTLTEAG-YVGEDVENIVLR 167

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST- 286
           +       +   E  GI+++DE DKI    +   I   VS EGVQ+ LL +VEG++ +  
Sbjct: 168 LLQAADYDVARAE-RGIIYIDEIDKIGRTTANVSITRDVSGEGVQQALLKIVEGTTANVP 226

Query: 287 ----------KYGSINTDHILFIASGAF---------HVSRPA----------------- 310
                     +Y  +NT++ILFI  GAF          + +                   
Sbjct: 227 PKGGRKHPNQEYIRVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDH 286

Query: 311 -------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
                         ++PE  GRF   V+ + L+  +   ILT+  + ++ QY EL   E 
Sbjct: 287 LLAKVETEDLIAFGMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYMELFAEEN 346

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDA 416
           + L F ++++ A     +   +     GAR L  ++E +L D+ F    D   + + I  
Sbjct: 347 VKLVFKKEALYA-----IAKKAKQAKTGARALGMILENLLRDLMFEIPSDPTVEAIHIQE 401

Query: 417 EYVRLHIGDFP 427
           + +  +     
Sbjct: 402 DTIAENKAPII 412


>gi|34557753|ref|NP_907568.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella
           succinogenes DSM 1740]
 gi|46576388|sp|Q7M8U5|CLPX2_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2
 gi|34483470|emb|CAE10468.1| PROTEASE CLPX [Wolinella succinogenes]
          Length = 397

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 128/287 (44%), Gaps = 53/287 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G +  G   L++  ++V+          ++ +        ES     +  +   
Sbjct: 104 SNILLLGPSGSGKTLLAKTLARVLNIPFAMSDATALTEAGYVGEDVES----ILSRLLHA 159

Query: 237 SIQMVE--NYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSV-------- 284
           +   +E    GIV++DE DKI  +     +G  +  EGVQ+ LL ++EG+SV        
Sbjct: 160 ASFDIEKAQKGIVYIDEIDKIAKKGESVQSGRDIGGEGVQQGLLKILEGASVYVPLKGAR 219

Query: 285 ---STKYGSINTDHILFIASGAF-----------------HVSRPA-----------DLL 313
              +T+    +T  +LFI  GAF                 + S P             ++
Sbjct: 220 KNSNTETVLFDTKDVLFICGGAFVGIKEERGEKRSGFLASNPSSPTQRTLRKQLLSYGMI 279

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE  GR P+ + L+ LN      IL + + ++I QY+ L   +G+ L+FT++++ A+A  
Sbjct: 280 PEFIGRIPLILELEPLNLESLVKILKEPKDSIIAQYQYLFSLDGVKLEFTDEALLAIAQK 339

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419
           +++      ++GAR L+ ++E +L  + F     +E T V I   +V
Sbjct: 340 SLD-----EELGARGLRHILEEILMPLLFEIPSKEEVTQVSITQGFV 381



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 70/115 (60%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P+EI   LD+Y+I Q+ AK A+++AL N ++R   P     EL   NILL+GP+G GKT
Sbjct: 58  KPQEIAQFLDQYVISQEKAKMALSVALYNHYKRISYPKHHHIELEKSNILLLGPSGSGKT 117

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   + ++++  V
Sbjct: 118 LLAKTLARVLNIPFAMSDATALTEAGYVGEDVESILSRLLHAASFDIEKAQKGIV 172


>gi|227546001|ref|ZP_03976050.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213635|gb|EEI81484.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 472

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 150/380 (39%), Gaps = 86/380 (22%)

Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT--SNTREVFRKKLRDGEI 160
            +  + VA+    +    E++E A        LD   G +       ++    + R    
Sbjct: 82  AKRALSVAVYNHYKRVNMELQESAEQ------LDGNNGHSGQTGKQAKQSVPTQTRAARR 135

Query: 161 SDKEI-DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
           S+  + D+EVA +     N  + G   VG   L++  ++VM          ++ +     
Sbjct: 136 SNDPLADVEVAKS-----NILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEA---- 186

Query: 220 MRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNG---IGVSREG 270
                    D++TV +  +Q  +       +GI+++DE DKI  +   N      VS EG
Sbjct: 187 ----GYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEG 242

Query: 271 VQRDLLPLVEGSSVSTKYG-----------SINTDHILFIASGAF--------------- 304
           VQ+ LL ++EG+  S                ++T  ILFI  GAF               
Sbjct: 243 VQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRE 302

Query: 305 -------HVSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                  H +   D                LLPE  GR PV   LK L   D   ILT  
Sbjct: 303 TGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQP 362

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
            + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+D  
Sbjct: 363 ANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGAGARGLRSIIERTLQDTM 417

Query: 402 FSASDLQE-KTVVIDAEYVR 420
           F    L + + V++D   V 
Sbjct: 418 FQLPSLDDVRQVIVDKASVE 437



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 45/230 (19%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------------------------ 43
            P +I   L+RY+IGQ++AKRA+++A+ N ++R  +                        
Sbjct: 64  KPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAK 123

Query: 44  --------------PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
                               E+   NILL+GPTGVGKT +++ LAR+   PF+  + T  
Sbjct: 124 QSVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTL 183

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEVREQASINAEE-RILDALVGKTA 143
           TE GYVG +VE +++ L+  A   V  ++      DE+ + A  + E   I   + G+  
Sbjct: 184 TEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGV 243

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNL 192
                ++    +    +       E      D      I GGA VG+ ++
Sbjct: 244 QQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293


>gi|46205724|ref|ZP_00048164.2| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 56/207 (27%)

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF----------- 304
           S EGVQ+ LL ++EG+  S            ++  ++T +ILFI  GAF           
Sbjct: 2   SGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQRG 61

Query: 305 ---------HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFRL 336
                     V  P D                   L+PE  GR PV   L+ L++   + 
Sbjct: 62  KGTSIGFGASVQAPDDRRTGEIFRSVEPEDLLKFGLIPEFVGRLPVLATLEDLDEEALKK 121

Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396
           IL + ++ L+ QY+ L + E + L F ++++  +A  A+   +     GAR L++++E +
Sbjct: 122 ILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKT-----GARGLRSILETI 176

Query: 397 LEDISFSASDLQE-KTVVIDAEYVRLH 422
           L D  +    L   + VVI  E V   
Sbjct: 177 LLDTMYDLPGLDSVEQVVIGPEVVEGK 203


>gi|313206080|ref|YP_004045257.1| sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445396|gb|ADQ81751.1| Sigma 54 interacting domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023741|gb|EFT36744.1| ATP-dependent Clp protease ATP-binding subunit clpX [Riemerella
           anatipestifer RA-YM]
 gi|325336480|gb|ADZ12754.1| ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma
           factor 54, interaction [Riemerella anatipestifer RA-GD]
          Length = 390

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 133/318 (41%), Gaps = 65/318 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
             +++ L      D +++IE        SN  + G    G   L++  ++ +        
Sbjct: 87  NHYKRLLHSSTKKDNDVEIEK-------SNIIMIGETGTGKTLLAKTIARELNVPFCIVD 139

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GV 266
              + +    +  D    L  +  V    ++  E  GIVF+DE DKI  +     I   V
Sbjct: 140 ATILTEAG-YVGEDVESILSRLLMVADYDVEKAEK-GIVFIDEIDKIARKSDNPSITRDV 197

Query: 267 SREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFH---------- 305
           S EGVQ+ LL L+EGS V+            KY  +NT +ILFIA GAF           
Sbjct: 198 SGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILFIAGGAFDGIKEIIERRL 257

Query: 306 ----------------------------VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337
                                         R   L+PE+ GRFPV  +L  L K     I
Sbjct: 258 NKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKKTMVRI 317

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           + + +++++ Q+K L K +GI L+FT+++++ + D           +GAR L+   E+VL
Sbjct: 318 MKEPKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKG-----LGARGLRGTTEKVL 372

Query: 398 EDISFSASDLQEKTVVID 415
           ED  F    + +  + I+
Sbjct: 373 EDYMFDIDIISKNKITIN 390



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 9/234 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLV 59
           L+    PREI   LD Y+IGQ  AK+ ++IA+ N ++R    +  +D   E+   NI+++
Sbjct: 54  LSELKKPREIKKTLDEYVIGQDQAKKQLSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMI 113

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           G TG GKT +++ +AR    PF  V+ T  TE GYVG +VE I+  L+ VA   V ++ +
Sbjct: 114 GETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVADYDVEKAEK 173

Query: 120 -----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                DE+ + A  +    I   + G+       ++    + +          +      
Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 233

Query: 175 DISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +  N   I GGA  GI  + E        G  K+   S +     L +  S  L
Sbjct: 234 NTQNILFIAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDL 287


>gi|257457892|ref|ZP_05623051.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii
           ATCC 35580]
 gi|257444605|gb|EEV19689.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii
           ATCC 35580]
          Length = 155

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 103/130 (79%), Gaps = 1/130 (0%)

Query: 1   MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           M +  +  +P  IV+ELD+YIIGQ  AK+AVA+ALRNR RR +L  D+R+E+ PKNIL++
Sbjct: 1   MTINLDELTPPHIVAELDKYIIGQTQAKKAVAVALRNRTRRLKLSEDIREEIAPKNILMI 60

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTGVGKT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V  ++V+   +
Sbjct: 61  GPTGVGKTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYSMVKSEMQ 120

Query: 120 DEVREQASIN 129
           + ++ QA  N
Sbjct: 121 ETLKAQAEKN 130


>gi|254992851|ref|ZP_05275041.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J2-064]
          Length = 268

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 8/193 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65
            P+EI   L  Y+IGQ+ AK+A+A+A+ N ++R        DE  L   NI L+GPTG G
Sbjct: 63  KPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSG 122

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LAR+   PF   + T  TE GYVG +VE I+  L+  A   V ++ +     D
Sbjct: 123 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIYID 182

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+       ++    +                   D  N  
Sbjct: 183 EIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGNIL 242

Query: 180 DIPGGASVGILNL 192
            I GGA  GI  +
Sbjct: 243 FIVGGAFDGIEQI 255



 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 22/167 (13%)

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210
             K++   E  + E+++         SN  + G    G   L++  ++++          
Sbjct: 92  HYKRINSNETKEDEVEL-------SKSNICLIGPTGSGKTLLAQTLARILNVPFAIADAT 144

Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSR 268
           S+ +    +  D  + L+ +       ++  E  GI+++DE DK+  +     I   VS 
Sbjct: 145 SLTEAG-YVGEDVENILLKLIQSADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSG 202

Query: 269 EGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF 304
           EGVQ+ LL ++EG+  S            +   I+T +ILFI  GAF
Sbjct: 203 EGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGNILFIVGGAF 249


>gi|213022389|ref|ZP_03336836.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 168

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGK 66
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +        EL   NILL GPTG GK
Sbjct: 66  TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGK 125

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           T ++  LARL   PF   + T  TE GYVG +VE II+ L+ 
Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167


>gi|256082754|ref|XP_002577618.1| ATP-dependent clp protease ATP-binding subunit clpx [Schistosoma
           mansoni]
 gi|238662943|emb|CAZ33856.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Schistosoma mansoni]
          Length = 320

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 125/355 (35%), Gaps = 84/355 (23%)

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           L+    VGKT +++ LA     PF   + T  T+ GYVG +VE  I  L+  A   V  +
Sbjct: 24  LIRDGSVGKTLLAQTLAHYLNVPFALYDCTSITQAGYVGEDVESTIGRLLQNANFNVELA 83

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           ++  V           +LD                           EID   + T   +S
Sbjct: 84  QQGIV-----------VLD---------------------------EIDKISSKTGHHLS 105

Query: 178 NFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
             D+ G G    +L L E    V+     K  R    + +                V   
Sbjct: 106 TRDVSGEGVQQAMLKLLE--GSVVNVPDVKSPRKLRGETFV---------------VDTT 148

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  +       LD+   I  R     IG     +   +         ++      TD +
Sbjct: 149 NILFIACGAFNGLDKI--ISRRKHKKTIGFD---MLTSMSESTAQDKCTSPVNPSATDSL 203

Query: 297 LFIASGAFHVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLIL 338
               S         D                  ++PE  GRFP+   L SLN+     +L
Sbjct: 204 NLFQSFESSAHEENDERDKLLQEVEANDLITYGMIPEFVGRFPIITALHSLNEEMLVRVL 263

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           T+  + LI QY+ L   +G  L  T  ++ A+A +A++ ++     GAR L++V+
Sbjct: 264 TEPRNALIKQYQLLFNIDGCELRVTPGALKAIARLALSQHT-----GARGLRSVL 313


>gi|6273581|emb|CAB60145.1| ClpX protein [Oenococcus oeni]
          Length = 413

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 70/335 (20%)

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGSG 203
           +   KK+  G   + E  +  +           SN  + G    G   L++  +K++   
Sbjct: 73  QEEAKKIFSGRCYNHEKRVNESLQHKSDVELQKSNILLIGPTGSGKTYLAQSLAKMLDVP 132

Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--NYGIVFLDEFDKIVARDSG 261
                  ++ +        E+  L     + + +   VE    GI+++DE DKI  +   
Sbjct: 133 FAIADATTLTEAGYVGEDVENVVL----KLLQAADFDVEKAQRGIIYIDEIDKIAKKSEN 188

Query: 262 NGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---- 304
             I   VS EGVQ+ LL L+EG+  S            +Y  ++T +ILFI  GAF    
Sbjct: 189 VSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQVDTSNILFIVGGAFDGIE 248

Query: 305 -----------------------HVSRPA-------------DLLPEIQGRFPVRVHLKS 328
                                  H ++                L+PE  GR P+   L  
Sbjct: 249 DVIRDRLGESMIGFGHEDQQEKQHFNKKNPLTQLTDQDVIKFGLIPEFLGRLPIISILNP 308

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + D   ILT  ++ L+ QYK L+  +G+ L F   ++  +A +A++  S     GAR 
Sbjct: 309 LYEDDLVKILTKPKNALVKQYKALLALDGVQLVFDPKALKEMAKIAIDKKS-----GARG 363

Query: 389 LQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
           L++      E   +      +   V++    V   
Sbjct: 364 LRSNYGIDYERKMYEIPSKPDVAKVLVTKAAVDGK 398



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 16/268 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65
           +P E+V  L+ Y+IGQ++AK+  +    N  +R           EL   NILL+GPTG G
Sbjct: 58  TPIELVKHLNEYVIGQEEAKKIFSGRCYNHEKRVNESLQHKSDVELQKSNILLIGPTGSG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120
           KT +++ LA++   PF   + T  TE GYVG +VE ++  L+  A   V +++R     D
Sbjct: 118 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQRGIIYID 177

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF- 179
           E+ + A  +    I   + G+    +  ++    +            +      D SN  
Sbjct: 178 EIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQVDTSNIL 237

Query: 180 DIPGGASVGILN-----LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-IDMDTV 233
            I GGA  GI +     L E         +++K   + +    +L   +  +  +  + +
Sbjct: 238 FIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQHFNKKNPLTQLTDQDVIKFGLIPEFL 297

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            R  I  + N   ++ D+  KI+ +   
Sbjct: 298 GRLPIISILNP--LYEDDLVKILTKPKN 323


>gi|108762916|ref|YP_630960.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108466796|gb|ABF91981.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Myxococcus xanthus DK 1622]
          Length = 399

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 123/303 (40%), Gaps = 66/303 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G  +++   + ++       +  +              +  D++ +  D
Sbjct: 103 SNILLMGPTGSGKTHIARNLADILH------VPFTTVDATEYTEAGYYGK--DVEVMISD 154

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSG-----NGIGVSREGVQRDLLPLVEGSSVS 285
            +            GI+F+DE DKI  R  G         +  EGVQ+ LL L+EG  V 
Sbjct: 155 LLFKANHSVEDTQRGIIFIDEVDKIARRSQGARNGAGSRDIGGEGVQQSLLKLLEGREVY 214

Query: 286 TK-----------YGSINTDHILFIASGAFHV-------------------SRPA----- 310
                        +  ++T  ILFI +G F                     ++ +     
Sbjct: 215 VPLNVTQAWNKSDFVQVDTRDILFICAGTFSDLHDDGDEGRRAMGFGAEDSAKRSQKRIS 274

Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   +L E  GR PV V L+ L + D   +LT+   +++ +++EL+  + + +DF 
Sbjct: 275 TRQLTDFGMLAEFLGRLPVVVQLERLGEEDLMRVLTEPPDSIVREFRELLSMDDLEVDFA 334

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +  +  +   +V        +GAR L++V+E V+ D+ F A + + + V++DA +VR  +
Sbjct: 335 DPGLREVVRYSVERG-----LGARGLRSVLEHVMADVMFEAPERRRRQVMVDAGFVRERL 389

Query: 424 GDF 426
              
Sbjct: 390 RGL 392



 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVG 65
            +PREI   LDR++IGQ  AKRAVAIA  N  +R       R   +   NILL+GPTG G
Sbjct: 55  LTPREIYERLDRFVIGQDGAKRAVAIAAHNHLKRLLARRLRRTSLIKKSNILLMGPTGSG 114

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT I+R LA +   PF  V+ T++TE GY G++VE +I DL+  A + V +++R
Sbjct: 115 KTHIARNLADILHVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 168


>gi|146281742|ref|YP_001171895.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|145569947|gb|ABP79053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas
           stutzeri A1501]
 gi|327479989|gb|AEA83299.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas
           stutzeri DSM 4166]
          Length = 438

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 63/235 (26%)

Query: 229 DMDTVHRDSIQMV------ENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVE 280
           D+D++    ++          +GIV++DE DK+  R  G      +S EGVQ+ LL LVE
Sbjct: 157 DVDSIIARLLEAAGGDVQKAQWGIVYIDEVDKLARRGGGGTAVRDISGEGVQQALLKLVE 216

Query: 281 GSSVSTKYGS----------INTDHILFIASGA------------------------FHV 306
           GS V    G           ++T +ILFIA GA                           
Sbjct: 217 GSEVRIGKGGRRGEHGEEQVVDTRNILFIAGGAFPGLETLVGSRVHPRGSAIGFHARPQQ 276

Query: 307 SRPA----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             P+                 L+PE  GRFP+   L+ L+ +    IL++  + L+ QY+
Sbjct: 277 QAPSINELLAALLPDDLHEFGLIPEFIGRFPIITFLRELDHATLLRILSEPRNALVKQYQ 336

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           +L   +G+ L+F+E ++  +AD A+   +     GAR L+ VME  L+   F   
Sbjct: 337 QLFAYQGVKLEFSEAALGHIADQALLRRT-----GARGLRAVMESALQRTMFEMP 386



 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 12/133 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPKNILLV 59
            +P   +  LD  +IGQ +AK  +A+A+ N + R                EL   NIL+ 
Sbjct: 59  LTPAAYMQHLDESVIGQDEAKETLAVAVYNHYLRLLNCTREPVCQLGGTVELEKSNILMA 118

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR- 118
           GP+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L++ A   V++++ 
Sbjct: 119 GPSGTGKTLLVRTLARILGVPFASADATTLTQAGYVGDDVDSIIARLLEAAGGDVQKAQW 178

Query: 119 ----RDEVREQAS 127
                DEV + A 
Sbjct: 179 GIVYIDEVDKLAR 191


>gi|114657645|ref|XP_001174360.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1 [Pan
           troglodytes]
          Length = 553

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 108/320 (33%), Gaps = 69/320 (21%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +V               
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETV--------------- 408

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 409 ----QVDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342
            G  NT   +             DL     +PE  GR PV V L SL++     ILT+  
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPR 522

Query: 343 SNLILQYKELMKTEGIILDF 362
           + +I QY+ L   + +   F
Sbjct: 523 NAVIPQYQALFSMDKVRFLF 542



 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGINPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|226942335|ref|YP_002797408.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter
           vinelandii DJ]
 gi|461755|sp|P33683|CLPX_AZOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|142368|gb|AAA64733.1| ORF 9 [Azotobacter vinelandii]
 gi|226717262|gb|ACO76433.1| Nitrogen fixation protein orf9, ClpX [Azotobacter vinelandii DJ]
          Length = 440

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 146/375 (38%), Gaps = 75/375 (20%)

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE--ERILDALVGKTATSNTREV-FR 152
           GR  E  ++    V  +  +  +  ++  Q     E  + + ++++G+ A   T  V   
Sbjct: 28  GRICEACVKLAHQVVSSWGQRRKNQQLAPQLRTPVEYKKHLDESVIGQEAAKETLSVAVY 87

Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
                    D+E   ++      + SN  + G +  G   L    ++++G        + 
Sbjct: 88  NHYLRLLNCDREPVCQLGEQVELEKSNILMAGPSGTGKTLLVRTLARILG--------VP 139

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMV------ENYGIVFLDEFDKIVARDSGNG-- 263
                   +        D+D++    +           +GIV++DE DK+  R  G    
Sbjct: 140 FAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQAQWGIVYIDEVDKLAKRSGGGTAV 199

Query: 264 IGVSREGVQRDLLPLVEGSSV----------STKYGSINTDHILFIASGA---------- 303
             +S EGVQ+ LL +VEG+ V           ++   ++T +ILFIA GA          
Sbjct: 200 RDISGEGVQQALLKMVEGTEVRISKSGRRNEHSEEQVVDTRNILFIAGGAFPGLEALVSS 259

Query: 304 --------------FHVSRPA----------------DLLPEIQGRFPVRVHLKSLNKSD 333
                              P+                 L+PE  GRFP+   L+ L+ + 
Sbjct: 260 RIQPKNTGIGFHAQPRREAPSINELMASLLPDDLHEFGLIPEFIGRFPIITFLQELDHAT 319

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              ILT+  + L+ QYK+L   +G+ L  T+ +++ +AD A+   +     GAR L+ V+
Sbjct: 320 LLRILTEPRNALVKQYKQLFAYQGVELVITDAALNYIADQALIRKT-----GARGLRAVL 374

Query: 394 ERVLEDISFSASDLQ 408
           E  L+   F+     
Sbjct: 375 EAALQQTMFNMPSQP 389



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------LPADLRDELMPKNILLVG 60
           +P E    LD  +IGQ+ AK  +++A+ N + R              + EL   NIL+ G
Sbjct: 60  TPVEYKKHLDESVIGQEAAKETLSVAVYNHYLRLLNCDREPVCQLGEQVELEKSNILMAG 119

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-- 118
           P+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L+D A   V++++  
Sbjct: 120 PSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQAQWG 179

Query: 119 ---RDEVREQAS 127
               DEV + A 
Sbjct: 180 IVYIDEVDKLAK 191


>gi|45389|emb|CAA47149.1| unnamed protein product [Pseudomonas aeruginosa PAO1]
          Length = 126

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/126 (46%), Positives = 90/126 (71%), Gaps = 4/126 (3%)

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
           +QGR P+RV LK+L+ +DF  ILT+  ++L  QY+EL+KTEG+ ++F ED I  LA++A 
Sbjct: 1   LQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIKRLAEIAW 60

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVVIDAEYVRLHIGDFPSETD 431
            +N    +IGARRL T++ER+LE++SFSA+DL     +K ++IDA YV  H+G+   + D
Sbjct: 61  QVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSHLGELAEDED 120

Query: 432 MYHFIL 437
           +  +IL
Sbjct: 121 LSRYIL 126


>gi|321470305|gb|EFX81282.1| hypothetical protein DAPPUDRAFT_102627 [Daphnia pulex]
          Length = 375

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 129/371 (34%), Gaps = 85/371 (22%)

Query: 40  RQQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           R ++      EL     NIL++GPTG GKT +++ +A+    PF   + T  T+ GYVG 
Sbjct: 82  RWEMKNKNSHELRLDKSNILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGE 141

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           N+E +I  L+  A   V ++++  V            LD                     
Sbjct: 142 NIESVIAKLLQDANYNVDKAQQGIV-----------FLD--------------------- 169

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
                   +++       I      GG  V           ++       + +  +    
Sbjct: 170 --------EVDKIGAVPGIHQLRDVGGEGVQ--------QGMLKMLEGTIVNVPERNAPR 213

Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS------GNGIGVSREGV 271
           +L  +          V   +I  V +     LD    +  R +      G G   S    
Sbjct: 214 KLRGETI-------QVDTTNILFVASGAYTGLDRI--VSRRKNEKVIILGFGASSSGNSA 264

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331
            R        + VS++     ++   F+ +          ++PE  GRFPV V   SL++
Sbjct: 265 GRRAATQAGMAEVSSEVDDDESERDAFLRAVEARNLIDFGMIPEFVGRFPVIVPFHSLSQ 324

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
                            ++ L   + + L F+ +++  +   A+   +     GAR L+ 
Sbjct: 325 DTL--------------FQMLFGMDKVELTFSPEALRTI-SKAIEKKT-----GARGLRA 364

Query: 392 VMERVLEDISF 402
           +ME +L D  F
Sbjct: 365 IMETLLLDEMF 375


>gi|142369|gb|AAA64734.1| ORF [Azotobacter vinelandii]
          Length = 324

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 63/238 (26%)

Query: 229 DMDTVHRDSIQMV------ENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVE 280
           D+D++    +           +GIV++DE DK+  R  G      +S EGVQ+ LL +VE
Sbjct: 41  DVDSIITRLLDAAGGDVQQAQWGIVYIDEVDKLAKRSGGGTAVRDISGEGVQQALLKMVE 100

Query: 281 GSSV----------STKYGSINTDHILFIASGA------------------------FHV 306
           G+ V           ++   ++T +ILFIA GA                           
Sbjct: 101 GTEVRISKSGRRNEHSEEQVVDTRNILFIAGGAFPGLEALVSSRIQPKNTGIGFHAQPRR 160

Query: 307 SRPA----------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
             P+                 L+PE  GRFP+   L+ L+ +    ILT+  + L+ QYK
Sbjct: 161 EAPSINELMASLLPDDLHEFGLIPEFIGRFPIITFLQELDHATLLRILTEPRNALVKQYK 220

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408
           +L   +G+ L  T+ +++ +AD A+   +     GAR L+ V+E  L+   F+     
Sbjct: 221 QLFAYQGVELVITDAALNYIADQALIRKT-----GARGLRAVLEAALQQTMFNMPSQP 273



 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           + GP+G GKT + R LAR+ G PF   + T  T+ GYVG +V+ II  L+D A   V+++
Sbjct: 1   MAGPSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQA 60

Query: 118 R-----RDEVREQAS 127
           +      DEV + A 
Sbjct: 61  QWGIVYIDEVDKLAK 75


>gi|224006884|ref|XP_002292402.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972044|gb|EED90377.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 348

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 125/307 (40%), Gaps = 61/307 (19%)

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           ++V D   D SN  I G    G   L +  +K++           + +    +  D    
Sbjct: 49  MQVEDCELDKSNIIIIGPTGSGKTLLVKTLAKLIDVPLVIADATCLTQAG-YVGEDVESI 107

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           L  +       ++  +  GIV++DE DKI        I   VS EGVQ  LL +VEG+ +
Sbjct: 108 LFKLYLESGQDLERCQ-RGIVYIDEMDKIRKSGGNVSISRDVSGEGVQHALLKIVEGNVI 166

Query: 285 STK----------YGSINTDHILFIASGAF-----------------------------H 305
           +            +  I+T +ILFI+ GAF                             H
Sbjct: 167 NVPKPGRKNPRGDFIQIDTTNILFISGGAFSGLEKIINRRMDAASIGFGAKMKKNVDDFH 226

Query: 306 V-------SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
           V       ++P DL     +PE  GRFPV V  K L +     ILT  +++LI QY    
Sbjct: 227 VQGKYFDNAQPKDLVTFGMIPEFVGRFPVIVSTKGLTEKSLIDILTVPKNSLIKQYTFQF 286

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TV 412
              GI    TE ++  +A +A    S     GAR L+++ E +L +  F    ++   TV
Sbjct: 287 AMNGIRFHATEGALKEIAKMAFGRGS-----GARGLRSITENMLMETMFVVPSIKNVHTV 341

Query: 413 VIDAEYV 419
            +DAE V
Sbjct: 342 YLDAEAV 348



 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 10/125 (8%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----------QLPADLRDELMPKNIL 57
           +P+EI   L+ Y+IGQ++ K A+++ + N ++R           Q       EL   NI+
Sbjct: 3   TPKEIYDGLNEYVIGQRNVKIALSVGVHNHYKRISVVEAQQSALQAMQVEDCELDKSNII 62

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           ++GPTG GKT + + LA+L   P +  + T  T+ GYVG +VE I+  L   +   +   
Sbjct: 63  IIGPTGSGKTLLVKTLAKLIDVPLVIADATCLTQAGYVGEDVESILFKLYLESGQDLERC 122

Query: 118 RRDEV 122
           +R  V
Sbjct: 123 QRGIV 127


>gi|48927362|emb|CAG34253.1| hypothetical protein [Stenotrophomonas maltophilia]
          Length = 112

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 75/112 (66%)

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L +L+K DF  ILT+ ++ L  QY+ L+ TEG+ + FT D+I+ LA++A  +N    +IG
Sbjct: 1   LGALSKGDFVRILTEPKAALAKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIG 60

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ARRL TV+ER+L+ +S+ A D   +++ ID+ YV  H+G+   + D+  +IL
Sbjct: 61  ARRLHTVLERLLDSLSYEAPDRDGESLAIDSAYVDKHLGELVQDPDLSRYIL 112


>gi|302418874|ref|XP_003007268.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium
           albo-atrum VaMs.102]
 gi|261354870|gb|EEY17298.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium
           albo-atrum VaMs.102]
          Length = 583

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 135/383 (35%), Gaps = 47/383 (12%)

Query: 45  ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104
             L  ++   N+L++G TG GKT I   L++    PF   +   FT+ GY+G++VE  I 
Sbjct: 194 GPLNVKIDKSNLLVMGNTGTGKTYILETLSKKLNVPFTIADCNAFTQAGYIGQDVETCIE 253

Query: 105 DLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
            L+  A   ++ +    V           +LD              F K         ++
Sbjct: 254 RLLVEANYDIKAAENGIV-----------VLD-------------EFDKLASKTPAHGRD 289

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           +  E    +            S   LN+ E  S                           
Sbjct: 290 VSGEGVQQA-----LLKLVEGSRVTLNVKENRSSRSTPPMTTNYNSGGSSPSSSQSSPPQ 344

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            + +D  T+   +I  +     V L     +  R S   +G   +   R  L   +    
Sbjct: 345 GK-VDQYTIDTSNILFIMCGAFVGLRSI--VERRVSKPSMGFGSDLRGRQNLSGDKHDLP 401

Query: 285 STKYGSINTDHILFIAS--GAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLI 337
              +  +   +    AS      ++ PADL     +PE+ GR      L  L   D   I
Sbjct: 402 KHLFDHLPHTNPDAPASTHTPLDLTTPADLQAFGFIPELIGRVSNICALNPLTLDDLFRI 461

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           LT+T  +L+ QY  L +T    L FT  ++ A     +   +   + GAR L+  MERVL
Sbjct: 462 LTETRHSLVAQYTALFETYPSRLHFTRKALYA-----IAAEAAKAETGARGLKMEMERVL 516

Query: 398 EDISFSASDLQEKTVVIDAEYVR 420
            +  F A       V+I    V+
Sbjct: 517 AEPIFEAP---VPYVLITEGCVK 536


>gi|71905873|ref|YP_283460.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica
           RCB]
 gi|71845494|gb|AAZ44990.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB]
          Length = 360

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 55/322 (17%)

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           R+ D ++G+     T  V          +  E  +E+  +     N  + G    G   L
Sbjct: 37  RLSDHVIGQDDAKKTLAVAIYAHFRRMANIAEDSVELTKS-----NILLIGPTGTGKTLL 91

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVHRDSIQMVENYGIVFLD 250
            E  ++++          S+     + + DE + ++   +D  + D    +   GIVF+D
Sbjct: 92  CETLARILDVPFVTADATSL--AQTQFVGDEIEAILHRLLDRANDD--LALAQRGIVFVD 147

Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGAF----H 305
           E DK+     G     S E VQ  LL ++EG+ V  K G  I+T +ILFI  GAF    H
Sbjct: 148 EVDKL-KAVGGESRATSGESVQHALLKIMEGAPVRLKDGRHIDTTNILFICGGAFVGLDH 206

Query: 306 V---------------------------SRPADLL-----PEIQGRFPVRVHLKSLNKSD 333
           +                            +P DLL     PE  GR P+   L  L++  
Sbjct: 207 ILTKTHTFGFISTAEGDDQKILERLNARVKPTDLLEFGLIPEFAGRLPIVTRLHDLSQDM 266

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
              ILT+ ++ +  Q++ ++  +G+ L    +    +A++A+   +     GAR L+ + 
Sbjct: 267 LVRILTEPKNAIYKQFQAMLAADGVDLQVEPNVFRQMAELAIEYKA-----GARSLRGIF 321

Query: 394 ERVLEDISFSASDLQ-EKTVVI 414
           E ++ D+ ++  D      V+I
Sbjct: 322 EEMMVDVMYAVPDNPAIGRVII 343



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +     P EIV  L  ++IGQ DAK+ +A+A+   +RR    A+   EL   NILL+GPT
Sbjct: 25  MPTLLKPSEIVRRLSDHVIGQDDAKKTLAVAIYAHFRRMANIAEDSVELTKSNILLIGPT 84

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +   LAR+   PF+  + T   +  +VG  +E I+  L+D A + +  ++R   
Sbjct: 85  GTGKTLLCETLARILDVPFVTADATSLAQTQFVGDEIEAILHRLLDRANDDLALAQRGIV 144

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
             DEV +  ++  E R       + A     E    +L+DG   D 
Sbjct: 145 FVDEVDKLKAVGGESRATSGESVQHALLKIMEGAPVRLKDGRHIDT 190


>gi|254751198|ref|ZP_05203237.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis
           str. Vollum]
          Length = 99

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/99 (67%), Positives = 88/99 (88%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++GPT
Sbjct: 1   MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE 
Sbjct: 61  GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVES 99


>gi|115379797|ref|ZP_01466867.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820758|ref|YP_003953116.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363189|gb|EAU62354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393830|gb|ADO71289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 356

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 52/235 (22%)

Query: 243 NYGIVFLDEFDKIVARDSG-----NGIGVSREGVQRDLLPLVEGSSVSTK---------- 287
             GI+F+DE DKI  R  G         +  EGVQ+ LL ++EG  V             
Sbjct: 124 QRGIIFVDEVDKIARRSQGARNGAGSRDIGGEGVQQGLLKMLEGREVFVPMNLTQAWNKS 183

Query: 288 -YGSINTDHILFIASGAFHV--------SRP-----------------------ADLLPE 315
            +  I+T  ILFI +G F          SRP                         +L E
Sbjct: 184 DFVQIDTRDILFICAGTFSDLHEYGEGGSRPLGFGSEEASRRITRRISVKQLVDFGMLAE 243

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375
             GR PV V L++L + +   +LT+   ++I +++EL+  + I LDFTE+++  +   +V
Sbjct: 244 FLGRLPVMVQLQALGEPELLRVLTEPPDSIIREFRELLAYDEIDLDFTEEALREVVHYSV 303

Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSET 430
                   +GAR L++++E V+ D+ F A +    +  +D ++VR  +    +  
Sbjct: 304 EKG-----LGARGLRSILEHVMADVMFEAPERGRGSFRVDGDFVRTRLNGLNASQ 353



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65
            +PR+I   LDRY+IGQ +AKR VAIA  N  +R Q     R  L+ K NILL+GPTG G
Sbjct: 12  LTPRQIFERLDRYVIGQDEAKRTVAIAAHNHLKRIQARRLRRGSLIKKSNILLIGPTGSG 71

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           KT I+R LA +   PF  V+ T++TE GY G++VE +I DL+  A + V +++R
Sbjct: 72  KTHIARNLADILSVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 125


>gi|261884907|ref|ZP_06008946.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 217

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 53/212 (25%)

Query: 264 IGVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF-------- 304
             VS EGVQ+ LL ++EGS V+             +  I+T +ILF+  GAF        
Sbjct: 6   RDVSGEGVQQALLKIIEGSPVNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEIIE 65

Query: 305 ------------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335
                                    +  P DL     +PE+ GR      L  +   D  
Sbjct: 66  RRIGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIPELIGRLHAIATLNEITTDDMV 125

Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395
            ILT+ ++ L+ QY++L   +G  L F  D+I  +A  A+N  +     GAR L+++ME 
Sbjct: 126 KILTEPKNALLKQYQKLFAIDGAXLKFDNDAIKEVATQAINRXT-----GARGLRSIMED 180

Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           ++ DI F+  DL+   V+I  +          
Sbjct: 181 IMMDIMFNLPDLKGYDVIISKDVAIGKAKPLL 212


>gi|86159007|ref|YP_465792.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775518|gb|ABC82355.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 368

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 110/301 (36%), Gaps = 61/301 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTV 233
           SN  + G    G  +L+   ++V+             +      ++     + L+     
Sbjct: 62  SNVLLIGPTGCGKTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHS 121

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD-----SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             ++       GIVF+DE DKI  R            +  EGVQ+ LL L+EG  V    
Sbjct: 122 IEEA-----QRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPL 176

Query: 289 G------------SINTDHILFIASGAFHVSR---------------------------- 308
           G             ++T  ILF+ +G F                                
Sbjct: 177 GLGGPQWARRDTVPVDTTDILFVCAGTFSDLFSYGGDGRSLGFGAARPGAAAPRRRIRPR 236

Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
                 +L E  GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ 
Sbjct: 237 DLVEYGMLAEFLGRLPVVVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDG 296

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
           ++  L   A    +     GAR L+ V+E VL ++ F A +     V++DA +VR  +  
Sbjct: 297 ALRELVAFARERGA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAPWVRARLEA 351

Query: 426 F 426
            
Sbjct: 352 I 352



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVG 65
            +PREI + L +Y+IGQ+ AKRA+A+A  +  +R  L    R+  L   N+LL+GPTG G
Sbjct: 14  LTPREIHARLSQYVIGQEPAKRALAVAAYSHVKRVALRRASREVALQKSNVLLIGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + E++R  V
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEEAQRGIV 130


>gi|153871193|ref|ZP_02000427.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
 gi|152072342|gb|EDN69574.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
          Length = 186

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVG 65
           +P+EI   L+ Y+IGQ  AK+ +++A+ N ++R      ++   E+   N+LL+GPTG G
Sbjct: 69  TPQEINLHLNDYVIGQDYAKKVLSVAVYNHYKRLDSNRQSENDVEISKSNVLLIGPTGCG 128

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           KT ++  LAR    PF   + T  TE GYVG +VE I+++   + I + +   R+
Sbjct: 129 KTLLAETLARFLEVPFAMADATTLTEAGYVGEDVEHILQNYYKIVIMMRKRPIRE 183


>gi|241558211|ref|XP_002400180.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
 gi|215499741|gb|EEC09235.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis]
          Length = 358

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GRFPV V   SL++     ILT+  + L+ QY+ L   + + L F +D++ A+
Sbjct: 222 GMIPEFVGRFPVLVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFDQDALRAI 281

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           A +A+   +     GAR L+ +ME +L +  F        +V I  E         
Sbjct: 282 ARLAMERKT-----GARGLRAIMETILLEPMFEIPGSDVVSVHISHECAMGKCAPL 332


>gi|197121674|ref|YP_002133625.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. K]
 gi|196171523|gb|ACG72496.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. K]
          Length = 367

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 110/300 (36%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTV 233
           SN  + G    G  +L+   ++V+             +      ++     + L+     
Sbjct: 62  SNVLLIGPTGCGKTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHS 121

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD-----SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             D+       GIVF+DE DKI  R            +  EGVQ+ LL L+EG  V    
Sbjct: 122 IEDA-----QRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPL 176

Query: 289 G------------SINTDHILFIASGAFHVSR---------------------------- 308
           G             ++T  ILF+ +G F                                
Sbjct: 177 GLGGPQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARSGAAAARRRIRPRD 236

Query: 309 --PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                +L E  GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ +
Sbjct: 237 LVEYGMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGA 296

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +  L   A    +     GAR L+ V+E VL ++ F A +     V++DA +VR  +   
Sbjct: 297 LRELVAFARERGA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVRARLEAI 351



 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVG 65
            +PREI + L R++IGQ+ AKRA+AIA  +  +R  +    R+  +   N+LL+GPTG G
Sbjct: 14  LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLIGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + +++R  V
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQRGIV 130


>gi|220916470|ref|YP_002491774.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954324|gb|ACL64708.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 367

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 110/300 (36%), Gaps = 60/300 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTV 233
           SN  + G    G  +L+   ++V+             +      ++     + L+     
Sbjct: 62  SNVLLVGPTGCGKTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHS 121

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD-----SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
             D+       GIVF+DE DKI  R            +  EGVQ+ LL L+EG  V    
Sbjct: 122 IEDA-----QRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPL 176

Query: 289 G------------SINTDHILFIASGAFHVSR---------------------------- 308
           G             ++T  ILF+ +G F                                
Sbjct: 177 GLGGPQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRD 236

Query: 309 --PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366
                +L E  GR PV V L  L       +LT     ++ Q + L+  +G+ LD T+ +
Sbjct: 237 LVEYGMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGA 296

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
           +  L   A    +     GAR L+ V+E VL ++ F A +     V++DA +VR  +   
Sbjct: 297 LHELVAFARERGA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVRARLEAI 351



 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVG 65
            +PREI + L R++IGQ+ AKRA+AIA  +  +R  +    R+  +   N+LLVGPTG G
Sbjct: 14  LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCG 73

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           KT ++R LAR+   PF   + T+FTE GY G++VE +I +L+  A + + +++R  V
Sbjct: 74  KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQRGIV 130


>gi|309799588|ref|ZP_07693814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
 gi|308116776|gb|EFO54226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
          Length = 268

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 9/193 (4%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTG 63
            P E+++ L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL++GPTG
Sbjct: 55  KPIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREETEDVDLQKSNILMIGPTG 114

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119
            GKT +++ LAR    PF   + T  TE GYVG +VE I+  L+  A   +  + R    
Sbjct: 115 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAERGIIY 174

Query: 120 -DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ + A  +    I   + G+       ++    +            +      D  N
Sbjct: 175 VDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKN 234

Query: 179 FDIPGGASVGILN 191
                G +   + 
Sbjct: 235 ILFIVGGAFDGIE 247



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E  D     SN  + G    G   L++  ++ +          ++ +    +  D  + L
Sbjct: 96  ETEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAG-YVGEDVENIL 154

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +      +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 155 LKLLQAADFNIERAE-RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVAS 213

Query: 286 T-----------KYGSINTDHILFIASGAF 304
                       +   ++T +ILFI  GAF
Sbjct: 214 VPPQGGRKHPQQEMIQVDTKNILFIVGGAF 243


>gi|149003196|ref|ZP_01828092.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758656|gb|EDK65653.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 251

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILL 58
           L+    P E++  L+ Y+IGQ  AKRA+A+A+ N ++R             +L   NIL+
Sbjct: 58  LSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILM 117

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           +GPTG GKT +++ LA+    PF   + T  TE GYVG +VE I+  L+ VA   +  + 
Sbjct: 118 IGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAE 177

Query: 119 R-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           R     DE+ + A  +    I   + G+       ++    +            +     
Sbjct: 178 RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQ 237

Query: 174 SDISNFDIPGGA 185
            D   + +  G 
Sbjct: 238 VDTKKYPLHRGW 249



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E  D     SN  + G    G   L++  +K +          ++ +    +  D  + L
Sbjct: 104 ESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAG-YVGEDVENIL 162

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS 285
           + +  V   +I+  E  GI+++DE DKI  +     I   VS EGVQ+ LL ++EG+  S
Sbjct: 163 LKLLQVADFNIERAE-RGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVAS 221

Query: 286 TK 287
             
Sbjct: 222 VP 223


>gi|219116376|ref|XP_002178983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409750|gb|EEC49681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 340

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 60/233 (25%)

Query: 243 NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YG 289
             GIV++DE DKI        I   VS EGVQ  LL +VEG+ ++             + 
Sbjct: 105 QRGIVYIDEADKIRKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKEPGRKNPRGDFL 164

Query: 290 SINTDHILFIASGAFH-----VSRPAD--------------------------------- 311
            I+T +ILFI  GAF      ++R  D                                 
Sbjct: 165 QIDTTNILFICGGAFSGLERIINRRMDAASIGFGAQMKKAIDDPKVQGRYFDSAIPKDLV 224

Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
              ++PE  GRFPV V  K L+K +   ILT   ++++ QY+ L   + +    T++ +D
Sbjct: 225 EYGMIPEFVGRFPVIVATKGLDKKNLIDILTVPRNSIMKQYRRLFAMDDVNFHVTKEGLD 284

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420
            +A+ A+   +     GAR L+++ + VL +  +    + +  TV +DA  VR
Sbjct: 285 EIAETALGRGT-----GARGLRSITDSVLMETQYVVPSMPDVHTVYVDASAVR 332



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 8/115 (6%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREI+  L+ Y+IGQ++ K A+++ + N ++          E+   NILL+GP+G GKT
Sbjct: 3   TPREIMKGLNEYVIGQKNVKVALSVGVYNHYKHC--------EIDKSNILLLGPSGSGKT 54

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            + + LARL   P +  + T  T+ GYVG +VE I+  L   +   V   +R  V
Sbjct: 55  LLVKTLARLIDVPLVIADATCLTQAGYVGEDVESILFKLYLESGQDVERCQRGIV 109


>gi|310830518|ref|YP_003965619.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
 gi|309249985|gb|ADO59551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus
           polymyxa SC2]
          Length = 395

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 57/292 (19%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  I G    G   L E  S+++          S+ +     + D+ + +++   +   
Sbjct: 95  SNIMIVGPTGSGKTYLLETLSRILDVPLVIADATSLTQA--GYVGDDVETILEKLIIKAG 152

Query: 237 SIQMVENYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS--- 290
                   GIV++DE DKI + +         ++ + VQ  LL ++EG+ V  + G+   
Sbjct: 153 GDVQKAEQGIVYIDEIDKIASYEVDGRKRTKDIAGQAVQESLLKMIEGNEVHLQMGNQRL 212

Query: 291 ------INTDHILFIASGAF------------HVSR---------PAD------------ 311
                 +NT +ILFI  GAF             V++         P D            
Sbjct: 213 NKQRVILNTKNILFIFGGAFVGLQDILQSRTKGVTKTVGFTTPAIPTDDIQDQELSQQDL 272

Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
                +PE  GR PV   L  L K D   IL   ++ ++ QY+ L++ +G+ L F   ++
Sbjct: 273 VSYGFIPEFMGRIPVIAVLNPLRKEDLMSILVKPKNAVLKQYQALLQMDGVKLSFHAKAV 332

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418
           + +A+ A+  N     +GAR L+ ++E+ + D+ +S    +E K+++I  E 
Sbjct: 333 EHIAEEAMKKN-----VGARGLKGIVEKRMYDLMYSLPQKEEIKSLIITKEM 379



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 21/155 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P EI  ELDR++IGQ +AK+ +++A+ N ++R  +   +   +   NI++VGPTG GK
Sbjct: 50  LKPHEIKEELDRFVIGQDEAKKLLSVAVYNHYKRIHMKTKVD--IQKSNIMIVGPTGSGK 107

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-------- 118
           T +   L+R+   P +  + T  T+ GYVG +VE I+  L+  A   V+++         
Sbjct: 108 TYLLETLSRILDVPLVIADATSLTQAGYVGDDVETILEKLIIKAGGDVQKAEQGIVYIDE 167

Query: 119 -----------RDEVREQASINAEERILDALVGKT 142
                      R   ++ A    +E +L  + G  
Sbjct: 168 IDKIASYEVDGRKRTKDIAGQAVQESLLKMIEGNE 202


>gi|195940567|ref|ZP_03085949.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
          Length = 211

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 47/201 (23%)

Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH----------------------- 305
           EG    + P         ++  ++T  ILFI  GAF                        
Sbjct: 3   EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVK 62

Query: 306 -------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL+     PE  GR PV   L  L++     IL + ++ L  
Sbjct: 63  AKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTK 122

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L   EG+ L+F ++++DA+A  A+   +     GAR L++++E  L D  +    +
Sbjct: 123 QYQALFNLEGVDLEFRDEALDAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSM 177

Query: 408 QE-KTVVIDAEYVRLHIGDFP 427
           ++ + VVID   +        
Sbjct: 178 EDVEKVVIDESVIDGQSKPLL 198


>gi|114319436|ref|YP_741119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225830|gb|ABI55629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 415

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +PR++ + LD Y+IGQ+ AKR +A+A+ N ++R       R  E+   NIL+VGPTG GK
Sbjct: 71  TPRQLHAHLDGYVIGQERAKRQLAVAVYNHYKRLIWRGARRPGEVAKSNILMVGPTGSGK 130

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T +   LAR    PF+  + + FT  GY G +V+ I   L++ A      +RR  V
Sbjct: 131 TLLLESLARHLEVPFVTADASTFTAAGYAGADVDDIAVRLLEAAGGDPAAARRGMV 186



 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 56/242 (23%)

Query: 229 DMDTVHRDSIQMVENY------GIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLV 279
           D+D +    ++           G+VFLDE DK+  R    SGNG   S EGVQ+ LL L+
Sbjct: 162 DVDDIAVRLLEAAGGDPAAARRGMVFLDEVDKLACRAPGGSGNGRDFSGEGVQQALLRLL 221

Query: 280 EGSSVSTKYG-------SINTDHILFIASGAFHVSR------------------------ 308
           EG  V+           S++T  +LF+  GAF   R                        
Sbjct: 222 EGRVVNVPRRGRGGGVHSVDTRDVLFVCGGAFQGLRQQMAGRRAGGGVGFGARLAETAEP 281

Query: 309 ----------PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        L+PE+ GR PV   L++L+++    +++   + L+ QY+ L + +G 
Sbjct: 282 PAVPDADDLVHYGLIPELVGRLPVVTTLEALSEAQLLEVISRPRNALLRQYQALFRQDGC 341

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAE 417
            L FT  +++A     +   +     GAR L+  +ER+L +  +      +   VV+  E
Sbjct: 342 ELHFTAGALEA-----LARRAAERGTGARGLRAELERLLLEPMYHVPARGDVEAVVVTTE 396

Query: 418 YV 419
            V
Sbjct: 397 SV 398


>gi|291517939|emb|CBK73160.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 275

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 1/127 (0%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P +I + LD Y++GQ  AK+ +++A+ N ++R         E+   N+L++GPTG GKT 
Sbjct: 144 PHKIKAMLDDYVVGQDYAKKVMSVAVYNHYKRVATGTMDDIEIEKSNMLMLGPTGSGKTY 203

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQAS 127
           + R LA+L   P    + T  TE GY+G ++E ++  L+  A N V   ++  +  ++  
Sbjct: 204 LVRTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAGNDVERCQQGIIFIDEID 263

Query: 128 INAEERI 134
             A+++I
Sbjct: 264 KLAKKKI 270


>gi|163784517|ref|ZP_02179381.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880218|gb|EDP73858.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 104

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 72/104 (69%)

Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393
           F  ILT  ++ LI QYK LM+TEG+ L+FT+D+++ +A +A  +N    +IGARRL T++
Sbjct: 1   FIKILTQPKNALIKQYKALMETEGVHLEFTDDAVEEIARIAEEVNEKTENIGARRLHTIL 60

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ER++ED SF A DL+ +T++ID + V+  +GD     D+  +IL
Sbjct: 61  ERIMEDYSFEAPDLKGQTIIIDKKVVQAKLGDIVQNEDLTKYIL 104


>gi|213852302|ref|ZP_03381834.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 200

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 47/175 (26%)

Query: 287 KYGSINTDHILFIASGAF------------------------------------HVSRPA 310
           ++  ++T  ILFI  GAF                                        P 
Sbjct: 11  EFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPE 70

Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365
           DL+     PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F ++
Sbjct: 71  DLIKFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDE 130

Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           +++A+A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 131 ALNAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 180


>gi|312171573|emb|CBX79831.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia
           amylovora ATCC BAA-2158]
          Length = 206

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD 311
            DK+V++   +GIG+              G S S K  S        +A           
Sbjct: 36  LDKVVSQRVDSGIGI--------------GFSASVKGKSEKATEGELLAQVEPEDLIKFG 81

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+A
Sbjct: 82  LIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFREEALKAIA 141

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           + A+   +     GAR L++++E  L D  +    + + + VVID   +
Sbjct: 142 NKAMLRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 185


>gi|226528894|ref|NP_001140703.1| hypothetical protein LOC100272778 [Zea mays]
 gi|194700644|gb|ACF84406.1| unknown [Zea mays]
          Length = 263

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 18/133 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------------DLRD 49
           +P+EI   LD +++GQ  AK+ +++A+ N ++R    +                  D   
Sbjct: 39  TPKEIRRGLDEFVVGQDKAKKVLSVAVHNHYKRIYNESSNKCSVKSWVRGGVATNSDDVI 98

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT +++ LAR    PF+  + T  T+ GY G +VE +I  L+  
Sbjct: 99  ELEKSNILLIGPTGSGKTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVA 158

Query: 110 AINIVRESRRDEV 122
           A   +  +    V
Sbjct: 159 ADFNIEAAEHGIV 171



 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 26/160 (16%)

Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219
            SD  I++E        SN  + G    G   L++  ++ +          ++ +     
Sbjct: 93  NSDDVIELEK-------SNILLIGPTGSGKTLLAKTLARYVNVPFVIADATAITQAGYSG 145

Query: 220 MRDES--DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDL 275
              ES   +L+     + ++ +    +GIV++DE DK+  +     +   VS EGVQ+ L
Sbjct: 146 EDVESVIYKLLVAADFNIEAAE----HGIVYIDEVDKLTKKADCRKDRRDVSGEGVQQAL 201

Query: 276 LPLVEGSSVSTK-----------YGSINTDHILFIASGAF 304
           L + EG+ +S             Y  ++T +ILFI  GAF
Sbjct: 202 LKIFEGTIISVPGKRSRENIPQGYVEVDTRNILFICGGAF 241


>gi|1616640|gb|AAB16818.1| unknown [Azospirillum brasilense]
          Length = 186

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 35/200 (17%)

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           V   +I  +       LD+   I  R  G  IG   +    D                  
Sbjct: 1   VDTSNILFICGGAFAGLDKI--IAQRGKGTSIGFGADVRGPDERS--------------- 43

Query: 293 TDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347
                           P DL     +PE  GR PV   L  L+++    ILT  ++ L+ 
Sbjct: 44  -------TGDILREVEPEDLLKFGLIPEFIGRLPVVATLSDLDETALVEILTKPKNALVK 96

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L + E + L+F++D++  ++  A+   +     GAR L+++ME +L D  F    L
Sbjct: 97  QYQRLFEMEDVRLEFSDDALRTISHKAIQRKT-----GARGLRSIMESILLDPMFDLPGL 151

Query: 408 QE-KTVVIDAEYVRLHIGDF 426
              ++++++ E V       
Sbjct: 152 SGVESILVNKEVVEGRAKPL 171


>gi|22532109|gb|AAM97841.1|AF447727_3 ATP-dependent protease Clp ATP-binding subunit ClpX [Pseudomonas
           syringae]
          Length = 191

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            V   +I  +       L++   I  R +  GIG + E     +    EG  V      +
Sbjct: 3   QVDTRNILFICGGAFSGLEKV--IQNRSTRGGIGFNAE-----VRSKEEGKKVGESLREV 55

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
             D ++              L+PE  GR PV   L  L+++    ILT+ ++ L  QY +
Sbjct: 56  EPDDLVKF-----------GLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAK 104

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-K 410
           L + EG+ L+F  D++ ++A  A+   +     GAR L++++E VL D  +      +  
Sbjct: 105 LFEMEGVDLEFRTDALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVS 159

Query: 411 TVVIDAEYVR 420
            VVID   + 
Sbjct: 160 KVVIDESVID 169


>gi|213419826|ref|ZP_03352892.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 171

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L  L++     IL + ++ L  QY+ L   EG+ L+F +++++A+
Sbjct: 47  GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 106

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E  L D  +    +++ + VVID   +
Sbjct: 107 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 151


>gi|74000524|ref|XP_865858.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit ClpX-like, mitochondrial precursor isoform 2
           [Canis familiaris]
          Length = 142

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           ++PE  GR PV V L SL++     ILT+  + +I QY+ L   +   L+ TED++ A+A
Sbjct: 1   MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 60

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
            +A+   +     GAR L+++ME++L +  F   +     V +D E V   
Sbjct: 61  RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGK 106


>gi|206589404|emb|CAQ36366.1| partial clpx protein [Ralstonia solanacearum MolK2]
          Length = 1531

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGY 94
           T +++ LARL   PF+  + T  TE GY
Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGY 156


>gi|257093535|ref|YP_003167176.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046059|gb|ACV35247.1| ATPase AAA-2 domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 359

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 46/285 (16%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G +  G   L +  S+++          S+ +        E+  L  +D     
Sbjct: 79  SNILLVGPSGTGKTLLCDTLSRMLKVPFVTADATSLAQTKYVNEEIEAVLLRLLDK-ADG 137

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDH 295
           +I+  + +GI+F+DE DK+    +     +S E VQ  LL ++EGS V  K    I+T +
Sbjct: 138 NIEDAQ-HGIIFIDEIDKL-KTSNAQARAISGESVQHALLKIMEGSPVKLKDNCYIDTGN 195

Query: 296 ILFIASGAF-------------------------------HVSRPADL-----LPEIQGR 319
           ILFI  GAF                                  +P DL     +PE  GR
Sbjct: 196 ILFICGGAFVGLENIMSKTHGFGFIATSGDDNQNILDRLNKRVKPTDLFEFGLIPEFTGR 255

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            P+  +L  L K+    I++   +++  QY E+ + EG+ L       + +A++A+   +
Sbjct: 256 LPIIANLHPLTKAMLVSIMSVPRNSIYRQYVEIFRGEGVELRIGPRVFEQIAEIAIEYKT 315

Query: 380 TVGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHI 423
                GAR L+ + E ++  I +   D      V I + +    +
Sbjct: 316 -----GARSLRGIFEELITPILYIVPDNHDIARVEITSLFEDARL 355



 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P  IV  LD+Y+IGQ+DAK+ +A+A+ + +R+       R+ +   NILLVGP+G GKT
Sbjct: 33  TPSAIVRYLDQYVIGQEDAKKVLAVAVYSHYRKIATFHGDRESIAKSNILLVGPSGTGKT 92

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----RDEV 122
            +   L+R+   PF+  + T   +  YV   +E ++  L+D A   + +++      DE+
Sbjct: 93  LLCDTLSRMLKVPFVTADATSLAQTKYVNEEIEAVLLRLLDKADGNIEDAQHGIIFIDEI 152

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDG 158
            +  + NA+ R +     + A     E    KL+D 
Sbjct: 153 DKLKTSNAQARAISGESVQHALLKIMEGSPVKLKDN 188


>gi|207743051|ref|YP_002259443.1| partial clpx protein [Ralstonia solanacearum IPO1609]
 gi|206594448|emb|CAQ61375.1| probable partial clpx protein [Ralstonia solanacearum IPO1609]
          Length = 215

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 56/200 (28%)

Query: 271 VQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFH-------------- 305
           +Q+ LL L+EG+  S             +  ++T +ILFI  GAF               
Sbjct: 1   MQQALLKLIEGTMASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKIIMQRSDKSG 60

Query: 306 --------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340
                                  P DL+     PE+ GR PV   L  L+++    IL +
Sbjct: 61  IGFGAEVKSREERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDEAALMEILVE 120

Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
            ++ ++ QY++L+  EG+ L+    ++ A+A  A+   +     GAR L++++E  L D+
Sbjct: 121 PKNAIVKQYQKLLAMEGVELEIRPSALTAIARKAIKRKT-----GARGLRSIVEHALMDV 175

Query: 401 SFSASDLQE-KTVVIDAEYV 419
            +   + +  + VVID   +
Sbjct: 176 MYDLPNHKGVQKVVIDESTI 195


>gi|116334975|ref|YP_802470.1| ATP-dependent protease ATP-binding subunit [Candidatus Carsonella
           ruddii PV]
 gi|116235256|dbj|BAF35104.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Carsonella ruddii PV]
          Length = 355

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 69/113 (61%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P +I  ELDRYIIGQ + K+ +++A+ N ++R  L    +  L   NI+LVGPTG GK
Sbjct: 17  LNPEKIKLELDRYIIGQNETKKIISVAVYNHYKRLFLIKSKKILLEKSNIILVGPTGCGK 76

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           T + + LA++   P I V+ T FTE GYVG +VE II+ L+      V  + +
Sbjct: 77  TLMVKTLAKIVNVPIICVDATSFTEAGYVGDDVESIIQKLLHECNYNVELTEK 129



 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 55/241 (22%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEG 281
           D++++ +  +             I+++DE DKI  +    +G  VS EGVQ+ +L L+EG
Sbjct: 108 DVESIIQKLLHECNYNVELTEKSIIYIDEIDKISKKTDFFSGKDVSGEGVQQSMLKLIEG 167

Query: 282 SSVSTKYG----------SINTDHILFIASGAF--------------------------- 304
            ++S              +I+T +ILFI  GAF                           
Sbjct: 168 ITLSIPSLVEKKNSQQIFNIDTTNILFIVGGAFSGIESIINFRINQELNFIKKNFELTDI 227

Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
            + +   DL+     PE  GR P+    K L++S++  IL    ++LI Q+  L   EG+
Sbjct: 228 INYTSSEDLINFGIIPEFLGRLPIIAKFKELSESEYIYILIKPRNSLIKQFCYLFLVEGV 287

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            + FT ++I  +A +AV        IGAR L++++E VL    F         +++  + 
Sbjct: 288 NIKFTFNAIKEIARIAVKRK-----IGARGLKSILEFVLLKAMFIFPSKNNLKLILIYKD 342

Query: 419 V 419
           V
Sbjct: 343 V 343


>gi|71901994|ref|ZP_00684041.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Ann-1]
 gi|71728239|gb|EAO30423.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella
           fastidiosa Ann-1]
          Length = 161

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           V  K      D    +A           L+PE  GR PV   L  L++S    ILT+ ++
Sbjct: 9   VKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELDESALVKILTEPKN 68

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            +  Q+K+L + E + L+F +D++ A+A  A+   +     GAR L+T++E VL D  + 
Sbjct: 69  AITKQFKKLFEMENVELEFRQDALSAVARKALKRKT-----GARGLRTIVELVLLDTMYE 123

Query: 404 ASDLQE-KTVVIDAEYVRLH 422
               +    VV+D   +   
Sbjct: 124 LPSQEGISKVVVDESVIENK 143


>gi|328953539|ref|YP_004370873.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453863|gb|AEB09692.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 367

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 38/290 (13%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+  +  T +  +N  + G    G    +E+ S ++G     +      +    + ++  
Sbjct: 86  IEQALRQTRTPKANIVLIGPTGCGKTYTAEVASGLIGVPFVVEDMTKFSETG-YVGQNTG 144

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           D LID+      + Q+ +  G+V+LDE DKI   ++     VS  GVQ+ LL L+EG   
Sbjct: 145 DILIDLLVAAGGNPQVAQ-MGVVYLDEIDKIAG-EAIAYRDVSGRGVQKGLLKLIEGVEN 202

Query: 285 STKYG----SINTDHILFIASGAFH-----VSRPADLLP--------------------- 314
           +   G    S++T H+LFIA G F      V +  DL                       
Sbjct: 203 TVDLGRERLSLSTRHVLFIAGGVFEKLDAIVQKRMDLHGFSGDWQDYLLTEDLVVFGMER 262

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           ++ GRFPVRV    L   +   ILT  E + +  Y    KT GI L FT +++ A+A   
Sbjct: 263 QLMGRFPVRVTYDMLTTQNLMDILTQCEESPLQAYIHDFKTWGIELVFTAEALKAIA--- 319

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
             L S     GAR L +++ RVL +  F         + +D  YVR  + 
Sbjct: 320 --LRSQQERTGARGLISILHRVLSEDLFRRPGSYTGLLQVDEGYVRRRLQ 367



 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 14/134 (10%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------PADLRD 49
           + F  +P E+ ++LDR+I+GQ+  K+ +A A+   +RR                   LR 
Sbjct: 33  IEFAKTPVELKADLDRFIVGQERGKKTMATAIAFHYRRLGHALKTALAENSKDIEQALRQ 92

Query: 50  ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
              PK NI+L+GPTG GKT  +   + L G PF+  ++TKF+E GYVG+N   I+ DL+ 
Sbjct: 93  TRTPKANIVLIGPTGCGKTYTAEVASGLIGVPFVVEDMTKFSETGYVGQNTGDILIDLLV 152

Query: 109 VAINIVRESRRDEV 122
            A    + ++   V
Sbjct: 153 AAGGNPQVAQMGVV 166


>gi|207109179|ref|ZP_03243341.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 220

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 16/128 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+ +                L 
Sbjct: 93  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 152

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
             NILL+GPTG GKT +++ LA+    P    + T  TE GYVG +VE I+  L+  +  
Sbjct: 153 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 212

Query: 113 IVRESRRD 120
            V++S + 
Sbjct: 213 NVQKSPKK 220


>gi|58699504|ref|ZP_00374231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533977|gb|EAL58249.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 216

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59
           MKL     P +I + L ++++GQ+ A+  +++A+ N  +   Q  A    E+   NI+L+
Sbjct: 63  MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119
           GPTG GKT +++ LA+++  PF   + T  TE GYVG +VE ++  L+  A   V +++R
Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181

Query: 120 DEV 122
             V
Sbjct: 182 GIV 184



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           +RI D  +      + +    K +   E +   + + + +    +  F       +   N
Sbjct: 58  DRISDMKLLLKKPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSN 117

Query: 192 LSELFSKVMGSGRKKKIRMSVQK-----CYPELMRDESDRLIDMDTVHRDSIQMVE---- 242
           +  +     G     K    V            + +      D+++V    +Q       
Sbjct: 118 IMLIGPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVV 177

Query: 243 --NYGIVFLDEFDKIVARDSGNGIG 265
               GIVF+DE DKI  +     I 
Sbjct: 178 KAQRGIVFIDEIDKITRKSESTSIT 202


>gi|289805558|ref|ZP_06536187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 75/106 (70%)

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           P+RV L++L  SDF  ILT+  +++ +QYK LM TEG+ ++FT+  I  +A+ A  +N T
Sbjct: 1   PIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNET 60

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
             +IGARRL TV+ER++E+IS++ASDL  + + IDAEYV  H+   
Sbjct: 61  TENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDAL 106


>gi|167948130|ref|ZP_02535204.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 181

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314
           I  R    GIG S E   +D          S     ++ +    I  G         L+P
Sbjct: 15  IKDRSEKGGIGFSAEVHSKDEAR-------SVGEIIVDVEPEDLIKYG---------LIP 58

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV   L+ L++     ILT+ ++ L  QY  L + EG  L+   D++ A+A  A
Sbjct: 59  EFVGRLPVVATLQELDEDSLVKILTEPKNALTKQYGRLFEMEGCELEIRADALRAIAGKA 118

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427
           +   +     GAR L+T++E+VL D  +    +     VV+D   +        
Sbjct: 119 MERKT-----GARGLRTILEQVLLDTMYDLPSMDNVSKVVLDESVIAGETEPLM 167


>gi|291614616|ref|YP_003524773.1| ATPase AAA [Sideroxydans lithotrophicus ES-1]
 gi|291584728|gb|ADE12386.1| ATPase AAA-2 domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 120/296 (40%), Gaps = 51/296 (17%)

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
             +   +  D+EVA +     N  + G    G   L E  S+V           S+ +  
Sbjct: 46  RKQGRQRLGDVEVAKS-----NILLIGPTGTGKTLLCETLSRVARVPFVTANATSLAQSK 100

Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
                 E+  L  ++    D  +     GIVF+DE DK+     G   G S E VQ  LL
Sbjct: 101 YVNEEIEALLLRLLEKAGGDVAKA--QRGIVFIDEIDKL-KASEGEQRGTSGERVQHALL 157

Query: 277 PLVEGSSVSTKYGS-INTDHILFIASGAF------------------------------- 304
            ++EG+ V       I+T +ILFI +GAF                               
Sbjct: 158 KIMEGAPVRLGSAQTIDTTNILFICAGAFVGLEDITAASHAFGFISVDKHDDQQILDRLN 217

Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
              +P DL     +PE  GR P+  +L++L+K     I+ +  +++  Q++E  + EG+ 
Sbjct: 218 SRVKPTDLFKFGLIPEFAGRLPIIANLQNLSKELLVKIMVEPRNSIYNQFREAFREEGVE 277

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVI 414
           L     +   +A++A         +GAR L+ + E +L  + F   D  + + VVI
Sbjct: 278 LHIELAAFQQIAEMAFEYK-----VGARSLRGIFEEMLTPVMFLVPDHPEIRRVVI 328



 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 66/117 (56%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             +P  I   LD+Y++GQ +AK+ +++A+ + +R+Q        E+   NILL+GPTG G
Sbjct: 13  KLTPSAIAGYLDQYVVGQDEAKKVLSVAVYSHYRKQGRQRLGDVEVAKSNILLIGPTGTG 72

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           KT +   L+R+A  PF+    T   +  YV   +E ++  L++ A   V +++R  V
Sbjct: 73  KTLLCETLSRVARVPFVTANATSLAQSKYVNEEIEALLLRLLEKAGGDVAKAQRGIV 129


>gi|291517938|emb|CBK73159.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 214

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 56/201 (27%)

Query: 275 LLPLVEGSSVSTKYG-----------SINTDHILFIASGAF------------------- 304
           +L L+EG+ V    G           +INT +ILFI  GAF                   
Sbjct: 1   MLKLLEGADVEVPIGASSKNAMVPTTTINTRNILFICGGAFPAMDEIIKARLNKHSSMGF 60

Query: 305 --------------------HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
                                  R   ++PE  GR P+    + L++     IL + ++ 
Sbjct: 61  MADLKDKYDDDKNILQKVTVEDLREFGMIPEFIGRLPIVFATEMLDEDMLVRILKEPKNA 120

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           +I QY++L++ + + L+F E ++ A+A  A++       +GAR L++++E  + DI +  
Sbjct: 121 IIKQYQKLLELDEVKLEFEEGALHAIARKALDKK-----LGARGLRSIIEEFMLDIMYEI 175

Query: 405 S-DLQEKTVVIDAEYVRLHIG 424
             D     V+I  +Y+    G
Sbjct: 176 PKDDNIGQVIITEDYIEKKGG 196


>gi|196250174|ref|ZP_03148868.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
 gi|196210358|gb|EDY05123.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus
           sp. G11MC16]
          Length = 159

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L++     ILT  ++ ++ QYK++++ +G+ L+F E ++  +
Sbjct: 31  GLIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREI 90

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
           A  A+   +     GAR L++++E ++ D+ F     ++ +  +I  + V
Sbjct: 91  AKKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITVDTV 135


>gi|189219853|ref|YP_001940494.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum
           infernorum V4]
 gi|189186711|gb|ACD83896.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum
           infernorum V4]
          Length = 484

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 113/289 (39%), Gaps = 75/289 (25%)

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSG 261
           + M           +      D++ + R+ IQ  E       +GI++LDE DK+      
Sbjct: 97  VPMVKADATKF--SETGYVGADVEDLVRELIQQAEGDVEIAQFGIIYLDEVDKLAT-SHF 153

Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKY----------------------GSINTDHILFI 299
            G  VS  GVQ +LL L+E + V  K                        +INT +ILFI
Sbjct: 154 MGRDVSGRGVQSNLLKLLEETDVPIKAAHDVLGQMQSLFDFQKGAKAPRKTINTRYILFI 213

Query: 300 ASGAFH----------------------VSRPADLL--------------PEIQGRFPVR 323
            SGAF                          P+D++              PE  GR PVR
Sbjct: 214 VSGAFEKLSEIVQKRIRRSHLGFQPHGPEGIPSDIIAEAKTADFVEYGLEPEFIGRLPVR 273

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           V  + L K D   +L D+E +++ QYK      GI L FTE+++  +A+ A+   +    
Sbjct: 274 VFCQPLGKDDLFHVLRDSEGSILKQYKSSFAAYGIELKFTEEALQLIAEQAMEEKT---- 329

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV---RLHIGDFPSE 429
            GAR L T+ E++L    F       + + ID   V      + +   +
Sbjct: 330 -GARGLMTICEKILRPFRFELPRSGVQELEIDGLTVLDPEKKLAEILKK 377



 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 76/118 (64%), Gaps = 2/118 (1%)

Query: 3   LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVG 60
           L F F+P++I + LDR++I Q++AK+ +++A+ + + + +           + +N+LLVG
Sbjct: 19  LQFQFTPKDIKAYLDRFVIKQEEAKKVLSVAVCDHYNQVKEALMGRGPAHYVKQNVLLVG 78

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           P+GVGKT + R LA   G P +K + TKF+E GYVG +VE ++R+L+  A   V  ++
Sbjct: 79  PSGVGKTYLVRCLADCIGVPMVKADATKFSETGYVGADVEDLVRELIQQAEGDVEIAQ 136


>gi|115361628|gb|ABI95884.1| ATP dependent Clp protease ATP-binding subunit ClpX1 [Pennisetum
           glaucum]
          Length = 174

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GRFP+ V L +LN+     +L + ++ L  Q+K+L     + L FT+ ++  +
Sbjct: 16  GLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDGALRII 75

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           A  A++ N+     GAR L+T++E +L D  +   D +     IDA  V  
Sbjct: 76  AKKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEKRIDAVVVDE 121


>gi|268565751|ref|XP_002639538.1| Hypothetical protein CBG04167 [Caenorhabditis briggsae]
          Length = 517

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 152/389 (39%), Gaps = 105/389 (26%)

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              R ++R+Q     EE + + +             R+ L+D E     +         +
Sbjct: 153 AKERKKLRKQNPEIEEEYLPEYIEKSQ---------RQVLKDLEKRQDIL--------LE 195

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            SN  + G +  G   +++  ++V+         + +  C    +        D+DTV +
Sbjct: 196 KSNMILLGASGTGKTYMTQKLAEVLD--------VPIVICDCTTLTQAGYVGDDVDTVVQ 247

Query: 236 DSIQMVE------NYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVS 285
             +            GIVFLDEFDKI              VS +GVQ+ LL LVEGS V 
Sbjct: 248 KLLAEARGDIERCQRGIVFLDEFDKIYTSSDPLHTSGNRDVSGKGVQQALLKLVEGSLVK 307

Query: 286 TKY-------GSINTDHILFIASGAF---------------------------------- 304
            +         +I+T +ILFI+SGAF                                  
Sbjct: 308 VRDPLAPNSKVTIDTTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTE 367

Query: 305 --------HVSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                   +VS+  D               ++PE+ GRFPV V    L+KS  + +LT+ 
Sbjct: 368 KLMDSDEENVSKARDEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEP 427

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           + +L+ Q K+  + E + L F+  +ID +AD+AV   +     GAR L++++E+ + +  
Sbjct: 428 KGSLVAQTKKFFENENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAK 482

Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSET 430
           +       K V I+ E ++          
Sbjct: 483 YE-PGSDVKCVEINDENLKDQSFTVIENR 510



 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 50/166 (30%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------------------------- 41
             P+EIV  L++Y++GQ+ AK+ +A+A+   +RR                          
Sbjct: 100 LYPKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKL 159

Query: 42  -QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARL 76
            +   ++ +E +P+                        N++L+G +G GKT ++++LA +
Sbjct: 160 RKQNPEIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEV 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
              P +  + T  T+ GYVG +V+ +++ L+  A   +   +R  V
Sbjct: 220 LDVPIVICDCTTLTQAGYVGDDVDTVVQKLLAEARGDIERCQRGIV 265


>gi|1142616|gb|AAA84743.1| ClpX-like protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 190

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 44/172 (25%)

Query: 287 KYGSINTDHILFIASGAF---------------------------------HVSRPADL- 312
           ++  I+T +ILFI  G F                                     P DL 
Sbjct: 1   EFIQIDTTNILFICGGRFDGIEQIIKRRLAQKVIGFGADNKAADLEKEDLLSKVLPEDLL 60

Query: 313 ----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368
               +PE  GR PV   L+ L++     ILT  ++ L+ Q+K++++ + + L+F E+++ 
Sbjct: 61  RFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALS 120

Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
            +A  A+   +     GAR L++++E ++ D+ F      + +  VI    V
Sbjct: 121 EIAKKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATV 167


>gi|218659018|ref|ZP_03514948.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli
           IE4771]
          Length = 127

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           +Y+IGQ+ AK+ +++A+ N ++R    + +   EL   NI+LVGPTG GKT +++ LAR+
Sbjct: 37  KYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARI 96

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
              PF   + T  TE GYVG +VE II  L+
Sbjct: 97  IDVPFTMADATTLTEAGYVGEDVENIILKLL 127


>gi|315636710|ref|ZP_07891940.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
 gi|315479025|gb|EFU69728.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri
           JV22]
          Length = 147

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 5/111 (4%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE+ GR  +   L  + + D   ILT+ ++ LI QY +L + + ++L+F +D++  L
Sbjct: 31  GLIPELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLEFEKDALKEL 90

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           A +A+   +     GAR L++++E ++ DI F     + KTVVI  E V  
Sbjct: 91  AKLAIVRKT-----GARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVVEK 136


>gi|119476202|ref|ZP_01616554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
 gi|119450829|gb|EAW32063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma
           proteobacterium HTCC2143]
          Length = 154

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ L+      ILT+ +++L  QY +L + E + +DF ED + A+
Sbjct: 26  GLIPEFVGRLPVIATLEELDVDALVSILTEPKNSLTRQYSKLFEMESVEVDFREDGVRAI 85

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
           A+ A++  +     GAR L++++E VL +  +          VVID   + 
Sbjct: 86  AEKAMHRKT-----GARGLRSILENVLLETMYKVPSEDTVSKVVIDESVIN 131


>gi|325662428|ref|ZP_08151034.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471262|gb|EGC74486.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 155

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE+ GR PV V L+ L++     ILT+ +S ++ QY++L++ +G+ L F ED++  +
Sbjct: 25  GLIPELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEI 84

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEYVR 420
           A ++++  +     GAR L+ ++E V+ D  F    D + KT  I    V+
Sbjct: 85  AKISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 130


>gi|62321058|dbj|BAD94134.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana]
          Length = 219

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 21/191 (10%)

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294
            D+  ++   G  F+D    +  R     IG             +  ++V        T 
Sbjct: 1   MDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAV--------TS 52

Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354
            +L        V+    L+PE  GR P+ V L +LN+     +LT+ +S L  QYK+L +
Sbjct: 53  SLLESLQSEDLVA--YGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFR 110

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL------Q 408
              + L FTE +   +A  A++ N+     GAR L++++E +L +  F   D        
Sbjct: 111 MNNVQLQFTEGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQS 165

Query: 409 EKTVVIDAEYV 419
            K V++D E V
Sbjct: 166 IKAVLVDEEAV 176


>gi|302852753|ref|XP_002957895.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f.
           nagariensis]
 gi|300256772|gb|EFJ41031.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f.
           nagariensis]
          Length = 1789

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 6/139 (4%)

Query: 220 MRDESDRLIDMDTVH-RDSIQMVENYGIVFLDE-FDKIVARDSGN---GIGVSREGVQRD 274
           M  E+ R++  D      +I  +    I F  E  DKIV   S     G GVS EGVQRD
Sbjct: 189 MDPEAQRIVSPDVATWMSAIASLVGESIWFEAEGIDKIVDPSSVRVVTGGGVSSEGVQRD 248

Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP-EIQGRFPVRVHLKSLNKSD 333
           LLP++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L  E+QGR P+RV LK L   D
Sbjct: 249 LLPIIEGSVVPTKHGNMSTEHVLFICSGAFHTAKPSDMLAEELQGRLPIRVELKGLTAED 308

Query: 334 FRLILTDTESNLILQYKEL 352
           F  ILT+ ++N++ Q + L
Sbjct: 309 FYRILTEPQNNMLRQQQTL 327


>gi|225620157|ref|YP_002721414.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira hyodysenteriae WA1]
 gi|225214976|gb|ACN83710.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira hyodysenteriae WA1]
          Length = 614

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 8/129 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIV++LD+ +IGQ +AK+A+A+       R     D+       NIL++GPTGVGK
Sbjct: 249 LTPKEIVAQLDKTVIGQDEAKKALAVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 305

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T + + LA + G PF + +VT  TE GYVG +VE ++ +L   A   + +++      DE
Sbjct: 306 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYRKANGDLEKAQHGIVFLDE 365

Query: 122 VREQASINA 130
           V + A  +A
Sbjct: 366 VDKIAKADA 374



 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 60/293 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L +  + ++G    +    ++ +    +  D    L ++      
Sbjct: 293 SNILMIGPTGVGKTYLVKTLADILGLPFARADVTTLTETG-YVGDDVEVVLYNLYRKANG 351

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK------- 287
            ++  + +GIVFLDE DKI   D+        S + VQ  LL ++ G  +          
Sbjct: 352 DLEKAQ-HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRM 410

Query: 288 -----YGSINTDHILFIASGAF-------------------------------------- 304
                   +NT +ILFI  GAF                                      
Sbjct: 411 MHSSDGILMNTKNILFIFGGAFVGLDDIIKMRLKGESSLGFGSNAVINKLQKNRILSQVD 470

Query: 305 -HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE  GR P+ V L  L K + + ILT T  + I++Y E  K+ G  L  T
Sbjct: 471 VKDIEKYGMIPEFIGRIPIIVTLNDLTKENLKDILTKTSESPIIKYTEFFKSIGKKLVVT 530

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            ++I+ + D A ++N     +GAR L++++E  + +I F+   ++  T+ +  
Sbjct: 531 AEAINFIVDKASSMN-----MGARSLKSIVETAMVNILFNLDGVKGNTLTLTK 578


>gi|60117397|gb|AAX14456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia
           endosymbiont of Drosophila mojavensis]
          Length = 176

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 12/126 (9%)

Query: 302 GAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
            A H  +P DL+     PE  GR P+   L  L+  D   +LT+  + LI QYK L+   
Sbjct: 22  NALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFS 81

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVI 414
            + L+F++++I A+A  A++  +     GAR L+ ++E +L DI +++ +   +  T+VI
Sbjct: 82  KVNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVI 136

Query: 415 DAEYVR 420
             + V+
Sbjct: 137 TKKMVQ 142


>gi|255083629|ref|XP_002508389.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299]
 gi|226523666|gb|ACO69647.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299]
          Length = 877

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GRFPV V L+SL + +   +L    + +  QY+ LM+  G+ L+FT+ ++  +
Sbjct: 712 GLIPEFVGRFPVTVPLRSLGEDELVRVLMGPRNAVGRQYQRLMRMHGVDLEFTDGALRVI 771

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIG 424
           A  A+   +     GAR L+T++ER+L +  F   D  +   VV+D    R  +G
Sbjct: 772 ARAALRRET-----GARGLRTLVERLLTEAMFEVPDAPDVVKVVVDESSARRGLG 821



 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL GPTG GKT +++ LA     P +  + T  T+ GYVG +VE ++  L+  A
Sbjct: 433 LEKSNILLCGPTGSGKTLLAKTLAEFVDVPIVIADATTLTQAGYVGEDVESLLHKLLQAA 492

Query: 111 INIVRESRRDEV 122
              +  ++R  V
Sbjct: 493 RFDLAAAQRGIV 504



 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 19/144 (13%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--DRLIDMDTVH 234
           SN  + G    G   L++  ++ +          ++ +        ES   +L+      
Sbjct: 436 SNILLCGPTGSGKTLLAKTLAEFVDVPIVIADATTLTQAGYVGEDVESLLHKLLQAARFD 495

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK----- 287
             + Q     GIV++DE DK+  +     I   VS EGVQ+ LL +VEG+ V+       
Sbjct: 496 LAAAQR----GIVYIDEIDKLTRKSENLSITRDVSGEGVQQALLKMVEGTVVNVPEKGGR 551

Query: 288 ------YGSINTDHILFIASGAFH 305
                 +  ++T  ILFI  GAF 
Sbjct: 552 KNPRGDFIQVDTSDILFICGGAFS 575



 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD 46
           +PR +V  LD Y++GQ  AK+ +A+A+ N ++R      
Sbjct: 260 TPRRMVQMLDAYVVGQTHAKKVLAVAVYNHYKRVWSAER 298


>gi|296125910|ref|YP_003633162.1| ATPase AAA [Brachyspira murdochii DSM 12563]
 gi|296017726|gb|ADG70963.1| ATPase AAA-2 domain protein [Brachyspira murdochii DSM 12563]
          Length = 604

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 8/134 (5%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K +   +P+EIV+ELD+ +IGQ +AK+A+A+       R     ++       NIL++GP
Sbjct: 234 KSSDILTPKEIVAELDKTVIGQDEAKKALAVHAYLHCLRISGNKEIP---FRSNILMIGP 290

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TGVGKT + + LA + G PF + +VT  TE GYVG +VE ++ +L   A   +  ++   
Sbjct: 291 TGVGKTYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYRKANGDLEHAQHGI 350

Query: 120 ---DEVREQASINA 130
              DEV + A  +A
Sbjct: 351 VFLDEVDKIAKADA 364



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 60/293 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L +  + ++G    +    ++ +    +  D    L ++      
Sbjct: 283 SNILMIGPTGVGKTYLVKTLADILGLPFARADVTTLTETG-YVGDDVEVVLYNLYRKANG 341

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK------- 287
            ++  + +GIVFLDE DKI   D+        S + VQ  LL ++ G  +          
Sbjct: 342 DLEHAQ-HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRM 400

Query: 288 -----YGSINTDHILFIASGAF-------------------------------------- 304
                   +NT +ILFI  GAF                                      
Sbjct: 401 MHSSDGILMNTKNILFIFGGAFVGLDDIIKMRLKGENSLGFGSNAVINKLQKDRILSQVD 460

Query: 305 -HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE  GR P+ V L  L K + + ILT T+ + I++Y E  ++ G  L  T
Sbjct: 461 VKDIEKYGMIPEFIGRIPIIVTLNELTKENLKDILTKTKESPIIKYTEFFRSIGKKLTVT 520

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
            ++I+ + D A ++N     +GAR L++++E  + +I F+   ++  T+ +  
Sbjct: 521 SEAINFIVDKASSMN-----MGARSLKSIVETAMVNILFNLDGIKGNTLTLTK 568


>gi|323451659|gb|EGB07535.1| hypothetical protein AURANDRAFT_64611 [Aureococcus anophagefferens]
          Length = 1035

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVG 60
           F  +P EI   LD  ++GQ  AKRA+A+A+   +    R  + P         KN+LL+G
Sbjct: 325 FRMTPAEIKRALDLEVVGQHAAKRAIAVAVAEHYGHARRCLEDPTRKDATWHKKNLLLLG 384

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           P+G GKT + R LA++  A ++K + TKF+  GYVGR+V+ ++  LVD A +    +   
Sbjct: 385 PSGCGKTQLCRALAKVVDAAYVKADATKFSATGYVGRDVDDVVAQLVDAAGDDREAAEFG 444

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159
            V         ER    L+G  A+ NTR+V    L+  E
Sbjct: 445 VVHVDEIDKVCER-PGGLLGGGASVNTRDVQTSLLKLME 482



 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 46/241 (19%)

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLL 276
           + D   +L+D     R++ +     G+V +DE DK+  R  G    G  V+   VQ  LL
Sbjct: 423 VDDVVAQLVDAAGDDREAAEF----GVVHVDEIDKVCERPGGLLGGGASVNTRDVQTSLL 478

Query: 277 PLVE---------GSSVSTKYG------SINTDHILFIASGAF-----HVSRP------- 309
            L+E         G  VS + G      + +T  +L+I SG F      ++R        
Sbjct: 479 KLMEDAELAVGNKGPPVSVRAGAKPASATFSTKFVLWIFSGTFLPLLDRLAREGAAGPSA 538

Query: 310 -----ADLLPEIQGRFPVRVHLKSLNKSDFRLILT-DTESNLILQYKELMKTEGIILDFT 363
                + L+ E  GR PVR  L  L+  D   IL  D   + + Q K   +T  I L   
Sbjct: 539 RDLVESGLIHEFVGRVPVRCALDPLSADDLVSILAADGAMSPLHQQKAYFETYDIELTVG 598

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY-VRLH 422
           +D+++A+A+ A+        +GAR L + ++ VL   +F         + +DA   V   
Sbjct: 599 DDALEAIAERALAHG-----LGARALVSELDAVLRGFAFHLPSADADRLHLDAALDVVKR 653

Query: 423 I 423
           +
Sbjct: 654 L 654


>gi|221135516|ref|ZP_03561819.1| ATP-dependent protease ATP-binding subunit ClpX [Glaciecola sp.
           HTCC2999]
          Length = 147

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR PV   L+ LN+     ILT  ++ +  QY  L   E   L+F ED++ A+
Sbjct: 23  GLIPEFIGRLPVVTSLEELNEEALIQILTQPKNAITKQYGALFALEDTQLEFREDALTAI 82

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           A  A+   +     GAR L++++E VL +  +     +    VV+D   ++
Sbjct: 83  AKKAMERKT-----GARGLRSIVEAVLLETMYQLPSTENVSKVVVDETVIQ 128


>gi|255316618|ref|ZP_05358201.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium
           difficile QCD-76w55]
          Length = 379

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 66/362 (18%)

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               +  ++++V E    N  ++ +D +         ++  +K +     +     I   
Sbjct: 29  NCKGKIEKKEDVIENLRKNI-KKPIDIIKYMDKFIIGQDKAKKMIATTIYNHYLSIINKV 87

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           D   +  N  + G +  G   +++  +  +       +   V             +  D+
Sbjct: 88  DVEKN--NILLTGASGTGKTLIAKTLANFLD------VPFVVADANTLTEAGYIGK--DV 137

Query: 231 DTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
           +++                YGIVFLDE DK+   ++     V +EGVQ+ LL L+EG+  
Sbjct: 138 ESIIASLYNKANKNLNKTKYGIVFLDEIDKLAKNNTTYKNQVGKEGVQQALLKLIEGTIC 197

Query: 285 STK------YGSINTDHILFIASGAF---------------------------HVSRPA- 310
             +      Y  I+T +ILFI  GAF                            +++   
Sbjct: 198 KIQDDITKDYVEIDTTNILFICGGAFVGIEDIIKERLHKKTIGFKSSLSLEETSLTKDEI 257

Query: 311 ------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
                        ++PE  GRFPV  +L++L+    +LIL  +E  LI  Y +L + +  
Sbjct: 258 RKNINIDDLYNFGMIPEFLGRFPVICNLETLDIEKVKLILK-SEEGLIGDYNKLFELQDK 316

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            L+FTE+++  +A++A+  N  V  +GAR L+T +   + ++ F AS+  E+  +I  E 
Sbjct: 317 ELEFTEEALSLIANLAIEEN--VLMLGARGLKTFLSPFMTELMFCASNDNEQKYLITEER 374

Query: 419 VR 420
           V+
Sbjct: 375 VK 376



 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 29/237 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            P +I+  +D++IIGQ  AK+ +A  + N +       D    +   NILL G +G GKT
Sbjct: 50  KPIDIIKYMDKFIIGQDKAKKMIATTIYNHYLSIINKVD----VEKNNILLTGASGTGKT 105

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I++ LA     PF+  +    TE GY+G++VE II  L + A   + +++   V     
Sbjct: 106 LIAKTLANFLDVPFVVADANTLTEAGYIGKDVESIIASLYNKANKNLNKTKYGIV----- 160

Query: 128 INAEERILDALVGKTATSNTR---------EVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                  LD +      + T          +    KL +G I   + DI       D +N
Sbjct: 161 ------FLDEIDKLAKNNTTYKNQVGKEGVQQALLKLIEGTICKIQDDITKDYVEIDTTN 214

Query: 179 F-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
              I GGA VGI ++  +  ++       K  +S+++    L +DE  + I++D ++
Sbjct: 215 ILFICGGAFVGIEDI--IKERLHKKTIGFKSSLSLEE--TSLTKDEIRKNINIDDLY 267


>gi|302344372|ref|YP_003808901.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640985|gb|ADK86307.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075]
          Length = 583

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 114/303 (37%), Gaps = 66/303 (21%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           +N  + G   VG   + +L +  +G    K       +    +  D  D + D+     D
Sbjct: 112 NNILLIGPTGVGKTYMIKLIADKLGVPFVKADATKFSETG-YVGGDVEDLIRDLVREAED 170

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY-------- 288
            I++ + +GIV+LDE DKI       G  VSR GVQR LL  +E + V  K         
Sbjct: 171 DIELAQ-FGIVYLDEVDKIAGTKGLLGPDVSRSGVQRALLKPMEETEVDLKVAHDPISQI 229

Query: 289 --------------GSINTDHILFIASGAF------------------------------ 304
                           +NT HILFI SGAF                              
Sbjct: 230 QAIEQYRKTGRAERRLVNTRHILFIMSGAFGELAEVIRRRRNKAQLGFSSQMRAQLDDQA 289

Query: 305 --HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357
             H    ADL+      E  GR PV V L  L   D   IL +  + +I+  K      G
Sbjct: 290 ILHEVTGADLVEFGFETEFVGRLPVTVVLDKLEADDLHQILRNPNNPVIISKKRDFAAYG 349

Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           I L F ++++  LA+ A  L +     GAR L +V ERV             + +VI  E
Sbjct: 350 IELRFEDEALRKLAEEAATLGT-----GARALVSVCERVCLPFERHLPSSDVRRLVITPE 404

Query: 418 YVR 420
            V 
Sbjct: 405 CVD 407



 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 23/186 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPK 54
           ++ F+  P ++V+ LD+YI+ Q++AK  +A  +   + R +  + L+++       ++  
Sbjct: 53  RIKFDLKPDDLVAYLDQYIVRQEEAKAVLATKICTHFNRAKYLSRLQNDDPSDGVGMIKN 112

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTGVGKT + + +A   G PF+K + TKF+E GYVG +VE +IRDLV  A + +
Sbjct: 113 NILLIGPTGVGKTYMIKLIADKLGVPFVKADATKFSETGYVGGDVEDLIRDLVREAEDDI 172

Query: 115 RESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
             ++      DEV + A           L    + S  +    K + +      E+D++V
Sbjct: 173 ELAQFGIVYLDEVDKIAGTKG------LLGPDVSRSGVQRALLKPMEE-----TEVDLKV 221

Query: 170 ADTSSD 175
           A     
Sbjct: 222 AHDPIS 227


>gi|297599045|ref|NP_001046600.2| Os02g0293500 [Oryza sativa Japonica Group]
 gi|255670812|dbj|BAF08514.2| Os02g0293500 [Oryza sativa Japonica Group]
          Length = 189

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 5/111 (4%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GRFP+ V L SL++     +LT  ++ L  QY +L +   + L FTE ++  +
Sbjct: 26  GLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLI 85

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           +  A+  N+     GAR L++++E +L +  +   +++     IDA  V  
Sbjct: 86  SKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDAVVVDE 131


>gi|309799589|ref|ZP_07693815.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
 gi|308116777|gb|EFO54227.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus
           infantis SK1302]
          Length = 128

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   ++PE+ GR PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++
Sbjct: 10  QKFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEAL 69

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDF 426
             +A+ A+   +     GAR L++++E  + D+ F     +  KTV I  E V       
Sbjct: 70  QEIANKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAVDGTAKPI 124

Query: 427 PS 428
             
Sbjct: 125 LE 126


>gi|300871407|ref|YP_003786280.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli 95/1000]
 gi|40794667|gb|AAR90874.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli]
 gi|300689108|gb|ADK31779.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit
           [Brachyspira pilosicoli 95/1000]
          Length = 594

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 8/129 (6%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +P+EIVSEL++ +IGQ DAK+A+++       R     D+       NIL++GPTGVGK
Sbjct: 229 LTPKEIVSELNKTVIGQDDAKKALSVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 285

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121
           T + + LA + G PF + +VT  TE GYVG +VE ++ +L   A   + +++      DE
Sbjct: 286 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYKKANGDLDKAQHGIVFLDE 345

Query: 122 VREQASINA 130
           V + A  +A
Sbjct: 346 VDKIAKADA 354



 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 121/312 (38%), Gaps = 64/312 (20%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G   VG   L +  + ++G    +    ++ +    +  D    L ++      
Sbjct: 273 SNILMIGPTGVGKTYLVKTLADILGLPFARADVTTLTETG-YVGDDVEVVLYNLYKKANG 331

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK------- 287
            +   + +GIVFLDE DKI   D+        S + VQ  LL ++ G  +          
Sbjct: 332 DLDKAQ-HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRM 390

Query: 288 -----YGSINTDHILFIASGAF-------------------------------------- 304
                   +NT +ILFI  GAF                                      
Sbjct: 391 MHSSDGIVMNTKNILFIFGGAFVGLEDIIKMRLKGESSLGFGSNAVLNKLQKNKILSQVD 450

Query: 305 -HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                   ++PE  GR P+ V L  L K + + IL  T+ + I++Y +  K+ G  L  T
Sbjct: 451 VKDVEKYGMIPEFIGRIPIIVTLNELTKDNLKDILLKTKESPIIKYVDFFKSIGKKLILT 510

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
           +D+I+ + D A  +N     +GAR L++++E  + +I F+   ++   + +  + +    
Sbjct: 511 DDAINYIVDKASTMN-----MGARSLKSIVETAMVNILFNLDGIKGNALTLTKKDIEKAF 565

Query: 424 GD----FPSETD 431
            +      S+ D
Sbjct: 566 EEREVVISSDKD 577


>gi|34762745|ref|ZP_00143734.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887595|gb|EAA24675.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 119

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE+ GR PV   L +L++     ILT  ++ ++ QY++L K EG+ L+FT++++  +
Sbjct: 4   GIIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEI 63

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYVR 420
           A  A+        +GAR L+ ++E  + DI F        K + I  E + 
Sbjct: 64  AKRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKKITITKETID 109


>gi|282898112|ref|ZP_06306107.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9]
 gi|281197256|gb|EFA72157.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9]
          Length = 157

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            ++PE  GR P+   ++ L++     ILT   S L+ QY++L+K + + L+F E+++ A+
Sbjct: 32  GMIPEFIGRMPMVAVVEPLDEDALMAILTQPRSALVKQYQKLLKMDNVNLEFKEEALSAI 91

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLH 422
           A  A    +     GAR L+ ++E ++ D+ +     ++  T  +  E V   
Sbjct: 92  AQEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVTTCTVTREMVEKR 139


>gi|309364622|emb|CAP24925.2| hypothetical protein CBG_04167 [Caenorhabditis briggsae AF16]
          Length = 489

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 146/365 (40%), Gaps = 104/365 (28%)

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              R ++R+Q     EE + + +             R+ L+D E     +         +
Sbjct: 153 AKERKKLRKQNPEIEEEYLPEYIEKSQ---------RQVLKDLEKRQDIL--------LE 195

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            SN  + G +  G   +++  ++V+         + +  C    +        D+DTV +
Sbjct: 196 KSNMILLGASGTGKTYMTQKLAEVLD--------VPIVICDCTTLTQAGYVGDDVDTVVQ 247

Query: 236 DSIQMVE------NYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVS 285
             +            GIVFLDEFDKI              VS +GVQ+ LL LVEGS V 
Sbjct: 248 KLLAEARGDIERCQRGIVFLDEFDKIYTSSDPLHTSGNRDVSGKGVQQALLKLVEGSLVK 307

Query: 286 TKY-------GSINTDHILFIASGAF---------------------------------- 304
            +         +I+T +ILFI+SGAF                                  
Sbjct: 308 VRDPLAPNSKVTIDTTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTE 367

Query: 305 --------HVSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
                   +VS+  D               ++PE+ GRFPV V    L+KS  + +LT+ 
Sbjct: 368 KLMDSDEENVSKARDEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEP 427

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           + +L+ Q K+  + E + L F+  +ID +AD+AV   +     GAR L++++E+ + +  
Sbjct: 428 KGSLVAQTKKFFENENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAK 482

Query: 402 FSASD 406
           +   D
Sbjct: 483 YEYQD 487



 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 50/166 (30%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ------------------------- 41
             P+EIV  L++Y++GQ+ AK+ +A+A+   +RR                          
Sbjct: 100 LYPKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKL 159

Query: 42  -QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARL 76
            +   ++ +E +P+                        N++L+G +G GKT ++++LA +
Sbjct: 160 RKQNPEIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEV 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
              P +  + T  T+ GYVG +V+ +++ L+  A   +   +R  V
Sbjct: 220 LDVPIVICDCTTLTQAGYVGDDVDTVVQKLLAEARGDIERCQRGIV 265


>gi|270720322|ref|ZP_06223384.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
 gi|270315319|gb|EFA27622.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus
           influenzae HK1212]
          Length = 179

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/88 (72%), Positives = 72/88 (81%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K     +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL   LR E+ PKNIL++GP
Sbjct: 23  KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGP 82

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKF 89
           TGVGKT I+RRLA+LA APFIKVE TK 
Sbjct: 83  TGVGKTEIARRLAKLANAPFIKVEATKL 110


>gi|293332851|ref|NP_001169842.1| hypothetical protein LOC100383734 [Zea mays]
 gi|224031951|gb|ACN35051.1| unknown [Zea mays]
          Length = 190

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR P+ V L +LN+     +LT+ +++L  QY+++     + L FT+ ++  L
Sbjct: 28  GLIPEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQYRKMFNLNKVKLHFTDGALRLL 87

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421
           A  A+  ++     GAR L+ ++E VL +  +   D +     +DA  V  
Sbjct: 88  AKKAIAKST-----GARGLRAILETVLLEAMYEVPDEKTGNERVDAVVVDE 133


>gi|257140629|ref|ZP_05588891.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia
           thailandensis E264]
          Length = 107

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 70/105 (66%)

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           DF  IL  T+++L+ QY+ L+ TE + L+F +D I  LA++A  +N    +IGARRL TV
Sbjct: 3   DFEAILVATDASLVKQYQALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTV 62

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +E++LE++SF+A +   ++V IDA YV   +G+   + D+  ++L
Sbjct: 63  IEKLLEEVSFAAGNHAGQSVTIDAAYVDRALGEVSKDEDLSRYVL 107


>gi|320166605|gb|EFW43504.1| ATP-dependent protease ATP-binding subunit [Capsaspora owczarzaki
           ATCC 30864]
          Length = 716

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 148/435 (34%), Gaps = 136/435 (31%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--RDELMPKNILLVGPTGVG 65
           + ++I + LD ++IGQ  AK+ +A+++ + + R Q  A +  +             TGV 
Sbjct: 355 TAQQIGAHLDAHVIGQHAAKKTIAVSVHSHYVRVQANARVAAKQAASKSREPSASKTGVL 414

Query: 66  KTAISRRLARLAG------------AP------FIKVEVTKF--TEIGYVGRNVEQIIRD 105
            T IS   A +               P      F K  +  F  T  GYVG ++E ++  
Sbjct: 415 STPISPASAMVTKKVVIQGQEHEVLVPRDGDIVFEKSNIMLFGPTGSGYVGEDIESVLHR 474

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           L+  + + V  +++                  +         R     +++D        
Sbjct: 475 LIVESDHNVEAAQQG----------------IIFLDEVDKIARSYEGARVKD-------- 510

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                                VG   + + F K++       + +  +          + 
Sbjct: 511 ---------------------VGGEGVQQGFLKILEGAV---VNVPDKGARKT-----AQ 541

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
             I +DT    +I  + +     L++   +  R S + +G                +SV 
Sbjct: 542 NFIQLDT---SNILFIASGAFSGLEKL--VANRVSQSSLGF--------------NASVK 582

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
            +    N   + F+        +   ++PE  GRFP+ VHL +L++ D   IL + ++ L
Sbjct: 583 AQ----NASDMEFLGQVQPTDLQKFGMIPEFIGRFPLLVHLDALSEKDLTRILVEPKNAL 638

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405
           I QY+ L   E                                     +++L D  +   
Sbjct: 639 IPQYQALFAMEK------------------------------------DKILVDTMYEMH 662

Query: 406 DLQEKTVVIDAEYVR 420
           DL+  +V+I A+ V+
Sbjct: 663 DLE--SVLITADVVK 675


>gi|323310018|gb|EGA63213.1| Mcx1p [Saccharomyces cerevisiae FostersO]
          Length = 271

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 22/209 (10%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDE-----FDK-IVAR-DSGNGIGVSREGVQRDLLPLVEG 281
           +  T  +D + +V+   I+F+        DK IV R +    I  + E V+      VE 
Sbjct: 8   NQTTTKKDEVFVVDTSNILFMIMGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEK 67

Query: 282 SSVSTKYGSINTDHILFIASG----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKS 332
                K+   NT   + + +G    A  ++ P DL     +PE+ GR P+   L+ L + 
Sbjct: 68  ERAK-KFRFSNTLEQVELDNGKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRD 126

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
           D   IL + ++ L+ QY+ + K  G+ L  T+ ++  +A  A+         GAR L+ +
Sbjct: 127 DLFHILKEPKNALLDQYEYIFKQFGVRLCVTQKALKKVAQFALK-----EGTGARGLRGI 181

Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRL 421
           MER+L ++++         V+ID   V  
Sbjct: 182 MERLLLNVNYDCPGSNIAYVLIDEATVDS 210


>gi|328951760|ref|YP_004369094.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452084|gb|AEB07913.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 595

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 118/306 (38%), Gaps = 77/306 (25%)

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI-------DMDTVHRDSI 238
            +G +  + +     G G+   +++  +K     ++ ++ +         D++ + RD +
Sbjct: 110 GIGSIKNNIILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLV 169

Query: 239 QMVE------NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY---- 288
              +       +GI+++DE DKI A  +  G  VSR GVQR LL  +E + V  K     
Sbjct: 170 YEADDDLELAQFGIIYIDEIDKIAASGNLIGPDVSRSGVQRALLKPMEETEVDLKTPHDP 229

Query: 289 ------------------GSINTDHILFIASGAFH-----------------VSRP---- 309
                              ++NT +ILFI SGAF+                   RP    
Sbjct: 230 ISQIQAIEHYRRTGKREKRTLNTRNILFIVSGAFNGLEKFIKDRLAKQEIGFHGRPRSKK 289

Query: 310 -----------ADLLP-----EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                       DL+      E  GR PV   L+ L   D   IL +  + +I+  K   
Sbjct: 290 RDREFWRQVNAEDLIKYGFESEFVGRLPVIAVLEELTADDLYEILKNPNNPIIISKKRDF 349

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413
           +  GI + F + ++  LA+ A          GAR L +V+E+ L          + K  +
Sbjct: 350 RAYGIDIKFEDRALHLLAEKAAQ-----ERTGARGLVSVIEKSLIQFEKCLPSSEIKEFL 404

Query: 414 IDAEYV 419
           +  E V
Sbjct: 405 VTPEVV 410



 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 6/123 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK------N 55
           K+ FN  P E+   L+ Y++ Q+ AK  +A  +   + R +   D      P       N
Sbjct: 58  KINFNLKPEELEDYLNEYVVKQETAKSILATKICTHFNRIRYLQDQGRVPDPGIGSIKNN 117

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           I+L+GPTGVGKT + + +A+  G PF+K + TKF+E GYVG +VE ++RDLV  A + + 
Sbjct: 118 IILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVYEADDDLE 177

Query: 116 ESR 118
            ++
Sbjct: 178 LAQ 180


>gi|238605865|ref|XP_002396565.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553]
 gi|215469372|gb|EEB97495.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553]
          Length = 140

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            +     R P    L  L   D R ILT+ + +L+ QY+ L    G+ + FT  +ID + 
Sbjct: 1   FITVFISRLPSITSLAPLTIPDLRRILTEVKGSLLSQYQALFGYSGVEIRFTSSAIDEIC 60

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
             A          GAR L+ +ME++L +  +       + V+I  E VR  
Sbjct: 61  RKASEKG-----GGARGLRGIMEKILLEPMYEVPGSDIRHVLITEEVVRGQ 106


>gi|12053339|emb|CAB66856.1| hypothetical protein [Homo sapiens]
          Length = 533

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 98/299 (32%), Gaps = 69/299 (23%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +V               
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETV--------------- 408

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 409 ----QVDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
            G  NT   +             DL     +PE  GR PV V L SL++     ILT+ 
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEP 521



 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGISPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|114657639|ref|XP_001174378.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 533

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 98/299 (32%), Gaps = 69/299 (23%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NILL+GPTG GKT +++ LA+    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 284 LEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
              V ++++  V            LD                             +++  
Sbjct: 344 NYNVEKAQQGIV-----------FLD-----------------------------EVDKI 363

Query: 171 DTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +   I      GG  V    L         V     +K    +V               
Sbjct: 364 GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETV--------------- 408

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                V   +I  V +     LD    I  R +   +G                + ++ +
Sbjct: 409 ----QVDTTNILFVASGAFNGLDRI--ISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR 462

Query: 288 YGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
            G  NT   +             DL     +PE  GR PV V L SL++     ILT+ 
Sbjct: 463 SGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEP 521



 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 79/313 (25%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTGVGKTAI 69
           I + LD+Y++GQ  AK+ +++A+ N ++R    +PA+LR +   +    + P    +   
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTP----RELE 227

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
            RR                        R  E     L+ +A                   
Sbjct: 228 IRR------------------------REDEYRFTKLLQIAGINPHG------------- 250

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                 +AL         +++ ++K     +     DI++  +     N  + G    G 
Sbjct: 251 ------NALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKS-----NILLLGPTGSGK 299

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------N 243
             L++  +K +       +  ++  C             D+++V    +Q          
Sbjct: 300 TLLAQTLAKCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANYNVEKAQ 351

Query: 244 YGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------SIN 292
            GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+               ++
Sbjct: 352 QGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVD 411

Query: 293 TDHILFIASGAFH 305
           T +ILF+ASGAF+
Sbjct: 412 TTNILFVASGAFN 424


>gi|153871194|ref|ZP_02000428.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
 gi|152072343|gb|EDN69575.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS]
          Length = 207

 Score =  126 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 24/197 (12%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291
            +   +I  +       L++   I AR   +GIG S     +D        +++    S+
Sbjct: 19  AIDTTNILFICGGAFAGLEKI--IQARSEKSGIGFSASVTNKDDKK-----TLNQLIKSV 71

Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
             D ++              L+PE+ GR PV   L+ L +     ILT+ ++ L  QYK 
Sbjct: 72  EPDDLI-----------KYGLIPELVGRLPVTTTLEELEEEQLVQILTEPKNALTKQYKR 120

Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           L + EG  L++  +++ A+A  AV  N+     GAR L++++E+VL D  +    +   T
Sbjct: 121 LFEMEGTELEWRPEALKAVARKAVTRNT-----GARGLRSILEQVLLDTMYELPSMNNAT 175

Query: 412 -VVIDAEYVRLHIGDFP 427
            VV+D   +        
Sbjct: 176 KVVVDETVIEEKSKPLI 192


>gi|2460279|gb|AAB80745.1| heat-shock protein HslU [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 128

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
           I+I +A     +     PG   +    L  +F   +G  ++K  ++ ++     L+ +E 
Sbjct: 1   IEINLAAAPMGVKIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEP 58

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGVQRDLLPLVEG +V
Sbjct: 59  AKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTV 118

Query: 285 STKYGSINTD 294
           STK+G +NTD
Sbjct: 119 STKHGMVNTD 128


>gi|207743050|ref|YP_002259442.1| partial clpx protein [Ralstonia solanacearum IPO1609]
 gi|206594447|emb|CAQ61374.1| putative partial clpx protein [Ralstonia solanacearum IPO1609]
          Length = 147

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
           +P EI   LD+Y+IGQ+ AK+ +A+A+ N ++R +      D EL   NILL+GPTG GK
Sbjct: 69  TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128

Query: 67  TAISRRLARLAGAPFIKVE 85
           T +++ LARL   PF+  +
Sbjct: 129 TLLAQTLARLLNVPFVIAD 147


>gi|213583953|ref|ZP_03365779.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 136

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 2/136 (1%)

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
           RKKLR+G++ DKEI+I +A     +     PG   +    L  +F   +G  ++K  ++ 
Sbjct: 1   RKKLREGQLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLK 58

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           ++     L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGV
Sbjct: 59  IKDAMKLLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGV 118

Query: 272 QRDLLPLVEGSSVSTK 287
           QRDLLPLVEG +VSTK
Sbjct: 119 QRDLLPLVEGCTVSTK 134


>gi|163804105|ref|ZP_02197890.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
 gi|159172082|gb|EDP57036.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4]
          Length = 117

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L  L++     IL + ++ L  QY  L + E   L+F ED++ A+A  A+   +
Sbjct: 1   LPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFREDALRAIAKKAMERKT 60

Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
                GAR L++++E VL +  +      +   VVID   + 
Sbjct: 61  -----GARGLRSILESVLLETMYELPSATDVSKVVIDESVIN 97


>gi|52855560|gb|AAU88654.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 222

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 31  AIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           A+A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  
Sbjct: 1   AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 60

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTRE 149
           TE GYVG +VE II+ L+      V++++R  V         + I          S TR+
Sbjct: 61  TEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRD 113

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSD 175
           V  + ++   +  K I+  VA     
Sbjct: 114 VSGEGVQQALL--KLIEGTVAAVPPQ 137



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 72/208 (34%), Gaps = 68/208 (32%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 23  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 74

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 75  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 134

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 135 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 194

Query: 305 -----HVSRPAD-----LLPEIQGRFPV 322
                    P D     L+PE  GR PV
Sbjct: 195 EGELLAQVEPEDLIKFGLIPEFIGRLPV 222


>gi|324537345|gb|ADY49500.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ascaris suum]
          Length = 129

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370
            L+PE  GR      L  LN+ D   ILT  ++ ++ QY++L   + + L F   ++ A+
Sbjct: 26  GLIPEFMGRISNIAPLVPLNEKDMLHILTKPKNAIVKQYEKLFAMDNVELKFEPQALKAM 85

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTVVIDAEY 418
           A   +  N     +GAR L +++E+ + D+ F    D    ++VID  Y
Sbjct: 86  AHKTIERN-----VGARGLSSILEKTMNDLMFEVPGDKTVTSIVIDKCY 129


>gi|52855514|gb|AAU88631.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 219

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 24  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 75

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 76  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 135

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 136 QGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|159479768|ref|XP_001697962.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas
           reinhardtii]
 gi|158274060|gb|EDO99845.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas
           reinhardtii]
          Length = 561

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 133/381 (34%), Gaps = 77/381 (20%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SPRE+V  LD ++IGQ+ AK+ +A+A  N ++R       R +     + +      G T
Sbjct: 100 SPRELVRALDAHVIGQEHAKKVLAVATHNHYKRIMSTRRNRRD-DTNGVQMHESLTYG-T 157

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++         P    E  +  E G   R+             +              +
Sbjct: 158 PLTDTAD-----PRAAFERHQLHEAGGGSRHAAPAHPHGHPHGQHEPPGHHYSRYAPPGT 212

Query: 128 INAEE--RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             A E  R  D L   + +       +           +++++        SN  + G  
Sbjct: 213 KAALEAQRNADNLRSGSGSHGGSGCAQASEELAAQLTAQVELDK-------SNMLLLGPT 265

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             G   L++  ++++          ++ +    +  D    L  +      ++++ +  G
Sbjct: 266 GSGKTLLAKTLARLVNVPFAMADATTLTQAG-YVGDDVESILYKLLQACNFNVEVAQQ-G 323

Query: 246 IVFLDEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           IV++DE DKI  R +        VS EGVQ+ LL ++EG+ V+             +  I
Sbjct: 324 IVYIDEIDKIAKRSAEGFTITRDVSGEGVQQALLKMLEGTVVNVPEKGGRKNPRGDFIQI 383

Query: 292 NTDHILFIASGAF-------------------HVSRPA---------------------- 310
           +T  ILFI  GAF                   +  RPA                      
Sbjct: 384 DTRDILFIVGGAFVDLDRQMLDTRVQGSMGFGNKVRPAGTGRPGGPRINADILLDVQHTD 443

Query: 311 ----DLLPEIQGRFPVRVHLK 327
                L+PE  GR PV V L+
Sbjct: 444 LIQYGLIPEFVGRLPVLVALQ 464


>gi|52855484|gb|AAU88616.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 213

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|52855486|gb|AAU88617.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855510|gb|AAU88629.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855524|gb|AAU88636.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855530|gb|AAU88639.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 220

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|313667283|ref|YP_004049684.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
 gi|313153914|gb|ADR37764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus
           profundus DSM 14977]
          Length = 406

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           PREI  ELDR + GQ+ AKRA+++A      R + P     +L   N+LLVGP+G GKT 
Sbjct: 64  PREIKQELDRRVAGQERAKRALSVAFATHALRFKNP-----DLPKANVLLVGPSGTGKTL 118

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123
           + +  AR+AG P    + T  T+ GYVG +VE ++  L+  A   +  ++R     DEV 
Sbjct: 119 LVKEAARVAGLPVAIADATSLTQAGYVGDDVESVLTRLLATAGGDLELAQRGVIFVDEVD 178

Query: 124 EQASINAEE 132
           + A    E 
Sbjct: 179 KIARKGGEN 187



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 51/218 (23%)

Query: 243 NYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTKYG---------- 289
             G++F+DE DKI  +   N      VS EGVQ+ LL LVEG+  +  +           
Sbjct: 168 QRGVIFVDEVDKIARKGGENPSITRDVSGEGVQQALLKLVEGTVANVPFKEGRKHPGEDT 227

Query: 290 -SINTDHILFIASGAF---------HVSRPA-------------------------DLLP 314
             + TD IL+I +GAF            RP                           L+P
Sbjct: 228 VQMKTDGILWIFAGAFEGLEMILEERKGRPGIGFGADTPEPDETLPEVTHEDLIRYGLIP 287

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR P  V L  L+    R I+ + E++ + +Y+ +    G+ L+ +E  +D +   +
Sbjct: 288 EFMGRVPQLVRLDPLDGDTLRRIVAEVENSYLERYRRIFDAYGVRLEMSEAFVDEVVRRS 347

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +         G R  Q V+E ++ ++ F   D +   +
Sbjct: 348 LK---NHRRAGGRAPQAVLEPIVHELLFHLPDPEVSQI 382


>gi|52855496|gb|AAU88622.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 217

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|52855136|gb|AAU88442.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855138|gb|AAU88443.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855542|gb|AAU88645.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855570|gb|AAU88659.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 221

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 72/208 (34%), Gaps = 68/208 (32%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 193

Query: 305 -----HVSRPAD-----LLPEIQGRFPV 322
                    P D     L+PE  GR PV
Sbjct: 194 EGELLAQVEPEDLIKFGLIPEFIGRLPV 221


>gi|52855520|gb|AAU88634.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855522|gb|AAU88635.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855568|gb|AAU88658.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855604|gb|AAU88676.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 219

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|52855482|gb|AAU88615.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855564|gb|AAU88656.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 214

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|52855662|gb|AAU88705.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 208

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 32  IALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90
           +A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  T
Sbjct: 1   VAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 60

Query: 91  EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150
           E GYVG +VE II+ L+      V++++R  V         + I          S TR+V
Sbjct: 61  EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDV 113

Query: 151 FRKKLRDGEISDKEIDIEVADTSSD 175
             + ++   +  K I+  VA     
Sbjct: 114 SGEGVQQALL--KLIEGTVAAVPPQ 136



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 22  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 73

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 74  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 133

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 134 PPQGGRKHPQQEFLQVDTSKILFICGGAF 162


>gi|52855680|gb|AAU88714.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 210

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52855488|gb|AAU88618.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855536|gb|AAU88642.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 220

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 72/208 (34%), Gaps = 68/208 (32%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 192

Query: 305 -----HVSRPAD-----LLPEIQGRFPV 322
                    P D     L+PE  GR PV
Sbjct: 193 EGELLAQVEPEDLIKFGLIPEFIGRLPV 220


>gi|52855148|gb|AAU88448.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855152|gb|AAU88450.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 219

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52855504|gb|AAU88626.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 216

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52697042|gb|AAU86258.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855142|gb|AAU88445.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855546|gb|AAU88647.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855548|gb|AAU88648.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855636|gb|AAU88692.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 214

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52855144|gb|AAU88446.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855146|gb|AAU88447.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855544|gb|AAU88646.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855550|gb|AAU88649.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855566|gb|AAU88657.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855580|gb|AAU88664.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 218

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52697044|gb|AAU86259.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 217

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52855498|gb|AAU88623.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 215

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|52855140|gb|AAU88444.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855150|gb|AAU88449.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855556|gb|AAU88652.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 213

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 33  ALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91
           A+ N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE
Sbjct: 1   AVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 60

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151
            GYVG +VE II+ L+      V++++R  V         + I          S TR+V 
Sbjct: 61  AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVS 113

Query: 152 RKKLRDGEISDKEIDIEVADTSSD 175
            + ++   +  K I+  VA     
Sbjct: 114 GEGVQQALL--KLIEGTVAAVPPQ 135



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 21  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 72

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 73  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 132

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 133 PPQGGRKHPQQEFLQVDTSKILFICGGAF 161


>gi|169597035|ref|XP_001791941.1| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15]
 gi|160707432|gb|EAT90945.2| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15]
          Length = 527

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 54/330 (16%)

Query: 46  DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105
           +   +L   N++++GPTGVGKT + + LA+  G P    + T FT+ GY+G +VE  +  
Sbjct: 181 EHEVQLEKSNVMILGPTGVGKTLMCKTLAKTLGVPIAMSDCTTFTQAGYIGDDVESCVAR 240

Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165
           L+  A   +  +     +    ++  ++I  A +          V +  L+  E +  ++
Sbjct: 241 LLSAANYDIEAAE----QGIIVLDEIDKIAGAKIAYGKDVGGEGVQQALLKIIEGTTVQV 296

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
             +   ++          G+        E  S     G K ++                 
Sbjct: 297 QAKPERSAGKGPGGSTGRGSPYDGPGSGESRSPPGPPGGKGEVF---------------- 340

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
                  V  D+I  +       L +   IV R +  G+G                    
Sbjct: 341 ------NVRTDNILFICTGAFANLHKI--IVDRKAMGGMGFGA----------------- 375

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
               SI T +    A G   + + AD L   +G     V L +L++     +LT+ + +L
Sbjct: 376 ----SIRTSNAHAAADGV--MLKGADALRFNEGH---TVLLAALDEEALVRVLTEPKDSL 426

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAV 375
           + Q         I L FT+ ++  +A  ++
Sbjct: 427 VRQEVYKFSLRDIELQFTQPALRKIAQKSL 456


>gi|58699989|ref|ZP_00374555.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533493|gb|EAL57926.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 109

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/107 (57%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
           ++V++    L+ +ES+RL+D D + +++I +V N GIVFLDE DKI AR    G  V+RE
Sbjct: 4   VTVKEAREILINEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNRE 62

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316
           GVQRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+
Sbjct: 63  GVQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPEL 109


>gi|325657413|gb|ADZ39188.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657415|gb|ADZ39189.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657417|gb|ADZ39190.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657421|gb|ADZ39192.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657423|gb|ADZ39193.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657425|gb|ADZ39194.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
 gi|325657429|gb|ADZ39196.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +                I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|325657427|gb|ADZ39195.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +                I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF----HVSR---------------------------------PADLLP 314
           NT +ILFI  GAF    ++ +                                    L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|52855490|gb|AAU88619.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 215

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 10/205 (4%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSNT 147
           GYVG +VE II+ L+      V++++R     DE+ + +  +    I   + G+      
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQAL 120

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN----LSELFSKVMGSG 203
            ++    +            +      D S      G +   L+            +G G
Sbjct: 121 LKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFG 180

Query: 204 RKKKIRMSVQKCYPELMRDESDRLI 228
              K +         L + E + LI
Sbjct: 181 ATVKAKSDKASEGELLTQVEPEDLI 205



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|325657419|gb|ADZ39191.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi]
          Length = 208

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 50/180 (27%)

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGSI 291
           GI+++DE DKI  ++    I   VS EGVQ+ LL ++EG+  +                I
Sbjct: 29  GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88

Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314
           NT +ILFI  GAF          +++ +                             L+P
Sbjct: 89  NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           E  GR PV  +L+ LNK D   IL D +++++ QY  + K + + L F +D+++++ D A
Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208


>gi|52855674|gb|AAU88711.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 208

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|52855154|gb|AAU88451.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855156|gb|AAU88452.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 218

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|52855160|gb|AAU88454.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 211

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|52855158|gb|AAU88453.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855492|gb|AAU88620.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855558|gb|AAU88653.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855572|gb|AAU88660.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855574|gb|AAU88661.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 217

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|52855708|gb|AAU88728.1| clp protease ATP-binding subunit [Shigella sp. AR-21793]
          Length = 207

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|52697046|gb|AAU86260.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697048|gb|AAU86261.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697050|gb|AAU86262.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697052|gb|AAU86263.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855162|gb|AAU88455.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855500|gb|AAU88624.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855532|gb|AAU88640.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 212

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 34  LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
           + N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1   VYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           GYVG +VE II+ L+      V++++R  V         + I          S TR+V  
Sbjct: 61  GYVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSG 113

Query: 153 KKLRDGEISDKEIDIEVADTSSD 175
           + ++   +  K I+  VA     
Sbjct: 114 EGVQQALL--KLIEGTVAAVPPQ 134



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 20  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 71

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 72  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 131

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 132 PPQGGRKHPQQEFLQVDTSKILFICGGAF 160


>gi|23336808|ref|ZP_00121970.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Bifidobacterium longum DJO10A]
          Length = 202

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 30/203 (14%)

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDLLPL 278
           + + +  + DT   D+  ++   G  F+   D IV +  G    G G +          L
Sbjct: 4   EGTRKHKEQDTAQMDTRGILFICGGAFVGLTD-IVRKRLGRRETGFGANWHDADMKDEEL 62

Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338
           +E          +N D +               LLPE  GR PV   LK L   D   IL
Sbjct: 63  LE---------QVNADDLAEF-----------GLLPEFIGRLPVTSVLKELTVDDLTAIL 102

Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
           T   + LI QY++L   +G+ L FTE +I A     +   +     GAR L++++ER L+
Sbjct: 103 TQPANALIKQYRKLFAVDGVDLQFTEQAIRA-----IADIAIKQGTGARGLRSIIERTLQ 157

Query: 399 DISFSASDLQE-KTVVIDAEYVR 420
           D  F    L + K V++D   V 
Sbjct: 158 DTMFQLPSLDDVKQVIVDKASVE 180


>gi|169144773|gb|ACA49157.1| ATP-dependent protease ClpX ATP-binding subunit [Allochromatium
           vinosum DSM 180]
          Length = 116

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
           PV   L+ L+++   LILT+ +  L+ QY  L + EG+ L+  +D++  ++  A+   + 
Sbjct: 1   PVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDALREISRKAMERKT- 59

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420
               GAR L+T+ME+VL D  +    +     VVIDA  + 
Sbjct: 60  ----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVIN 96


>gi|283479302|emb|CAY75218.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           pyrifoliae DSM 12163]
          Length = 115

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +   L  L++     IL + ++ L  QY+ L   EG+ L+F E+++ A+A+ A+   +  
Sbjct: 1   MVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAIANKAMLRKT-- 58

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419
              GAR L++++E  L D  +    + + + VVID   +
Sbjct: 59  ---GARGLRSIVEGALLDTMYDLPSVDDVEKVVIDESVI 94


>gi|52855168|gb|AAU88458.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 217

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 35  RNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
            N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE G
Sbjct: 1   YNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAG 60

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           YVG +VE II+ L+      V++++R  V         + I          S TR+V  +
Sbjct: 61  YVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGE 113

Query: 154 KLRDGEISDKEIDIEVADTSSD 175
            ++   +  K I+  VA     
Sbjct: 114 GVQQALL--KLIEGTVAAVPPQ 133



 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 71/207 (34%), Gaps = 68/207 (32%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 19  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 70

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 71  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 130

Query: 287 -----------KYGSINTDHILFIASGAF------------------------------- 304
                      ++  ++T  ILFI  GAF                               
Sbjct: 131 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 190

Query: 305 -----HVSRPAD-----LLPEIQGRFP 321
                    P D     L+PE  GR P
Sbjct: 191 EGELLAQVEPEDLIKFGLIPEFIGRLP 217


>gi|52855166|gb|AAU88457.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 216

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 35  RNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
            N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE G
Sbjct: 1   YNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAG 60

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           YVG +VE II+ L+      V++++R  V         + I          S TR+V  +
Sbjct: 61  YVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGE 113

Query: 154 KLRDGEISDKEIDIEVADTSSD 175
            ++   +  K I+  VA     
Sbjct: 114 GVQQALL--KLIEGTVAAVPPQ 133



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 19  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 70

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 71  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 130

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 131 PPQGGRKHPQQEFLQVDTSKILFICGGAF 159


>gi|52855164|gb|AAU88456.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 211

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 35  RNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
            N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE G
Sbjct: 1   YNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAG 60

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           YVG +VE II+ L+      V++++R  V         + I          S TR+V  +
Sbjct: 61  YVGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGE 113

Query: 154 KLRDGEISDKEIDIEVADTSSD 175
            ++   +  K I+  VA     
Sbjct: 114 GVQQALL--KLIEGTVAAVPPQ 133



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 19  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 70

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 71  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 130

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 131 PPQGGRKHPQQEFLQVDTSKILFICGGAF 159


>gi|282852260|ref|ZP_06261607.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556594|gb|EFB62209.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 90

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           + D +++L+ QY  L+K +GI L FT+++ID +A +A  +N    +IGARRL T++E++L
Sbjct: 1   MKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRLATILEKLL 60

Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           ED+ +   D+    + I  +YV   + D  
Sbjct: 61  EDVLYEGPDMNMGEITITQKYVDQKLSDII 90


>gi|315453009|ref|YP_004073279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           felis ATCC 49179]
 gi|315132061|emb|CBY82689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter
           felis ATCC 49179]
          Length = 896

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 83/203 (40%), Gaps = 15/203 (7%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            +SP+ I + LD+++IGQ+ AK+ +++   + ++R +  + L       N + +GP+G G
Sbjct: 587 KYSPKAIKAYLDQFVIGQEQAKKQMSLVFSDHYKRIRGQSSLE----KANAICIGPSGSG 642

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT +     +    P+       FT  GY+G    Q+   L   A   ++++++  +   
Sbjct: 643 KTFLIEMATKYLDLPYCIANAASFTPTGYIGNETNQMFATLYSSADKDIQKAQKGVL--- 699

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
                   +LD +      S   + +R+ +++  +   E  I   D     S   I    
Sbjct: 700 --------VLDEIDKLGQGSWHDKEWRQGVQNELLKVIEKGIVSFDYGGRASGETITLQT 751

Query: 186 SVGILNLSELFSKVMGSGRKKKI 208
              +  +   F K+       + 
Sbjct: 752 DHMLFIVLGHFEKLWKDNSSSEK 774



 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 44/216 (20%)

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS-REGVQRDLLPLVEGSSVSTKYG------- 289
           IQ  +  G++ LDE DK+     G+      R+GVQ +LL ++E   VS  YG       
Sbjct: 691 IQKAQK-GVLVLDEIDKL---GQGSWHDKEWRQGVQNELLKVIEKGIVSFDYGGRASGET 746

Query: 290 -SINTDHILFIASGAFH----VSRPADLLPEIQG--------------RFPVRVHLKSLN 330
            ++ TDH+LFI  G F      +  ++ LP+                 RF VRV  ++++
Sbjct: 747 ITLQTDHMLFIVLGHFEKLWKDNSSSEKLPQFSNEDLIECGMKREFLRRFSVRVVFEAVD 806

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
                   T+     +  ++E  + EG +L+F++++   L   A+        +G   L 
Sbjct: 807 IEML----TELLDRRLKPFQEEFRAEGSVLEFSQEAKHLLVKNALK-----EGVGMSGLD 857

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426
             +  VL  + F   +      +ID +    H+G  
Sbjct: 858 QKLHEVLMPLRFDLENYYGLRCLIDFD----HLGGV 889


>gi|71988660|ref|NP_001021561.1| hypothetical protein K07A3.3 [Caenorhabditis elegans]
 gi|31746617|gb|AAF39912.2| Hypothetical protein K07A3.3a [Caenorhabditis elegans]
          Length = 356

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 49/165 (29%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP---------------------- 44
             P+EIV  L++Y++GQ++AK+ +A+A+   +RR +                        
Sbjct: 99  LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158

Query: 45  --------------------------ADLRDELM-PKNILLVGPTGVGKTAISRRLARLA 77
                                        +D ++   N++L+G +G GKT ++++LA + 
Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             P +  + T  T+ GYVG +V+ +I+ L+  A+  + + +R  V
Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQRGIV 263



 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 37/250 (14%)

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           Y+   V Q  R  V+  + +  +    E    A    + R  +    +      ++  R+
Sbjct: 121 YLAVAVYQHYRR-VENNLRVTEQWMLSEAVAAAKERKKMRKQNPEEEEYYPEYVQKSQRQ 179

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            L+D E     I         D SN  + G +  G   +++  ++V+       + + + 
Sbjct: 180 ILKDLEKRQDMI--------LDKSNMILLGASGTGKTFMTQKLAEVLD------VPIVIC 225

Query: 214 KCYPELMRDESDRLID--MDTVHRDSIQMVE--NYGIVFLDEFDKIVARDS----GNGIG 265
            C            +D  +  +  +++  +E    GIVFLDEFDKI              
Sbjct: 226 DCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQRGIVFLDEFDKIYTSSDPLHTSGNRD 285

Query: 266 VSREGVQRDLLPLVEGSSVSTKY-------GSINTDHILFIASGAFH-----VSRPAD-- 311
           VS +GVQ+ LL LVEGS V  +         +I+T +ILFIASGAF      V+R  D  
Sbjct: 286 VSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTIDTSNILFIASGAFSNIEHIVARRMDKR 345

Query: 312 LLPEIQGRFP 321
           L+  +   FP
Sbjct: 346 LVTSLLFHFP 355


>gi|52855660|gb|AAU88704.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 205

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 12/204 (5%)

Query: 36  NRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GY
Sbjct: 1   NHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY 60

Query: 95  VGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTRE 149
           VG +VE II+ L+      V++++R     DE+ + +  +    I   + G+       +
Sbjct: 61  VGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLK 120

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGR 204
           +    +            +      D S      G +   L+       E  S +    +
Sbjct: 121 LIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGAK 180

Query: 205 KKKIRMSVQKCYPELMRDESDRLI 228
            K       +    L + E + LI
Sbjct: 181 VKAKSDKASE-GELLAQVEPEDLI 203



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 18  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 69

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 70  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 129

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 130 PPQGGRKHPQQEFLQVDTSKILFICGGAF 158


>gi|52855678|gb|AAU88713.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 210

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 36  NRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GY
Sbjct: 1   NHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY 60

Query: 95  VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
           VG +VE II+ L+      V++++R  V         + I          S TR+V  + 
Sbjct: 61  VGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEG 113

Query: 155 LRDGEISDKEIDIEVADTSSD 175
           ++   +  K I+  VA     
Sbjct: 114 VQQALL--KLIEGTVAAVPPQ 132



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 18  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 69

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 70  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 129

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 130 PPQGGRKHPQQEFLQVDTSKILFICGGAF 158


>gi|52855694|gb|AAU88721.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 36  NRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           N ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GY
Sbjct: 1   NHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY 60

Query: 95  VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
           VG +VE II+ L+      V++++R  V         + I          S TR+V  + 
Sbjct: 61  VGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEG 113

Query: 155 LRDGEISDKEIDIEVADTSSD 175
           ++   +  K I+  VA     
Sbjct: 114 VQQALL--KLIEGTVAAVPPQ 132



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 18  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 69

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 70  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 129

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 130 PPQGGRKHPQQEFLQVDTSKILFICGGAF 158


>gi|260906307|ref|ZP_05914629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Brevibacterium linens BL2]
          Length = 115

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
           +   + +L+++    ILT+ ++ L+ QY+ + + + + L F  D+++A++D+A+   +  
Sbjct: 1   MLATVSTLDRAALISILTEPKNALVKQYQRMFEFDNVELRFETDALEAISDLALLRGT-- 58

Query: 382 GDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422
              GAR L++++E VL+ + F     ++   VV+  E V  +
Sbjct: 59  ---GARGLRSILEEVLQPVMFDVPSREDIAEVVVTREVVDKN 97


>gi|52855526|gb|AAU88637.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 214

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 19  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 70

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 71  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 130

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 131 QGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52855632|gb|AAU88690.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 209

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 12/203 (5%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREV 150
           G +VE II+ L+      V++++R     DE+ + +  +    I   + G+       ++
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL 120

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGRK 205
               +            +      D S      G +   L+       E  S +    + 
Sbjct: 121 IEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGAKV 180

Query: 206 KKIRMSVQKCYPELMRDESDRLI 228
           K       +    L + E + LI
Sbjct: 181 KAKSDKASE-GELLAQVEPEDLI 202



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52697062|gb|AAU86268.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697064|gb|AAU86269.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 215

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52697060|gb|AAU86267.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697066|gb|AAU86270.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 205

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52855502|gb|AAU88625.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 213

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52855576|gb|AAU88662.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 209

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|52697054|gb|AAU86264.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697056|gb|AAU86265.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52697058|gb|AAU86266.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855698|gb|AAU88723.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 204

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 37  RWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
            ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYV
Sbjct: 1   HYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYV 60

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
           G +VE II+ L+      V++++R  V         + I          S TR+V  + +
Sbjct: 61  GEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGV 113

Query: 156 RDGEISDKEIDIEVADTSSD 175
           +   +  K I+  VA     
Sbjct: 114 QQALL--KLIEGTVAAVPPQ 131



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 17  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 68

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 69  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 128

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 129 PPQGGRKHPQQEFLQVDTSKILFICGGAF 157


>gi|1655938|gb|AAC44746.1| ClpX-like protein [Vibrio parahaemolyticus]
          Length = 106

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           +     IL + ++ L  QY  L + E   L+F ED++ A+A  A+   +     GAR L+
Sbjct: 1   EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKT-----GARGLR 55

Query: 391 TVMERVLEDISFSASDLQE-KTVVIDAEYVR 420
           +++E VL +  +      +   VVID   + 
Sbjct: 56  SILESVLLETMYELPSATDVSKVVIDESVIN 86


>gi|75763961|ref|ZP_00743588.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488554|gb|EAO52143.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 118

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 72/99 (72%)

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +++GPTGVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E
Sbjct: 1   MMIGPTGVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKE 60

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155
               +V+++A   A +R+++ LV      +  +   + L
Sbjct: 61  EMVVKVQDKAEEQANQRLVEILVPSPEKQSGFKNPLEML 99


>gi|148977243|ref|ZP_01813870.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
 gi|145963525|gb|EDK28788.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium
           SWAT-3]
          Length = 80

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 54/79 (68%)

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418
            ++FTED I+ +AD A  +N T  +IGARRL TVMER++++ISF A+D    T+VID  Y
Sbjct: 2   NIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDKAGSTLVIDEAY 61

Query: 419 VRLHIGDFPSETDMYHFIL 437
           V   +G+F  + D+  FIL
Sbjct: 62  VNSKLGEFVEDEDLSRFIL 80


>gi|52855624|gb|AAU88686.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 204

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 36  NRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94
           N + R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GY
Sbjct: 1   NHYTRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY 60

Query: 95  VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
           VG +VE II+ L+      V++++R  V         + I          S TR+V  + 
Sbjct: 61  VGEDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEG 113

Query: 155 LRDGEISDKEIDIEVADTSSD 175
           ++   +  K I+  VA     
Sbjct: 114 VQQALL--KLIEGTVAAVPPQ 132



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 18  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 69

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 70  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 129

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 130 PPQGGRKHPQQEFLQVDTSKILFICGGAF 158


>gi|52855170|gb|AAU88459.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 214

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855642|gb|AAU88695.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 207

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855582|gb|AAU88665.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855598|gb|AAU88673.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 205

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855688|gb|AAU88718.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 203

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 18  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 69

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 70  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 129

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 130 QGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855592|gb|AAU88670.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855600|gb|AAU88674.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855658|gb|AAU88703.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855668|gb|AAU88708.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855686|gb|AAU88717.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 213

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855562|gb|AAU88655.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 210

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52855672|gb|AAU88710.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855696|gb|AAU88722.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 203

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|52697068|gb|AAU86271.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855586|gb|AAU88667.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 208

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 38  WRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           ++R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG
Sbjct: 1   YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 60

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156
            +VE II+ L+      V++++R  V         + I          S TR+V  + ++
Sbjct: 61  EDVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQ 113

Query: 157 DGEISDKEIDIEVADTSSD 175
              +  K I+  VA     
Sbjct: 114 QALL--KLIEGTVAAVPPQ 130



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 16  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 67

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 68  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 127

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 128 PPQGGRKHPQQEFLQVDTSKILFICGGAF 156


>gi|213859666|ref|ZP_03385370.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 79

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 65/79 (82%)

Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
             +G  VSREGVQRDLLPLVEG +VSTK+G + TDHILFI+SGAF +++P+DL+PE+QGR
Sbjct: 1   ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFISSGAFQIAKPSDLIPELQGR 60

Query: 320 FPVRVHLKSLNKSDFRLIL 338
            P+RV L++L  SDF  IL
Sbjct: 61  LPIRVELQALTTSDFERIL 79


>gi|254705082|ref|ZP_05166910.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv.
           3 str. 686]
          Length = 77

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 60/77 (77%)

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420
           +F++D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D    T +IDA YV+
Sbjct: 1   EFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVK 60

Query: 421 LHIGDFPSETDMYHFIL 437
             IG     TD+  FIL
Sbjct: 61  EKIGGLAKNTDLSRFIL 77


>gi|289803116|ref|ZP_06533745.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 98

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 6/83 (7%)

Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397
           + + ++ L  QY+ L   EG+ L+F +++++A+A  A+   +     GAR L++++E  L
Sbjct: 1   MKEPKNALTKQYQALFNLEGVDLEFRDEALNAIARKAMARKT-----GARGLRSIVEAAL 55

Query: 398 EDISFSASDLQE-KTVVIDAEYV 419
            D  +    +++ + VVID   +
Sbjct: 56  LDTMYDLPSMEDVEKVVIDESVI 78


>gi|52855628|gb|AAU88688.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 202

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 39  RRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG 
Sbjct: 1   KRLRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 60

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE II+ L+      V++++R  V         + I          S TR+V  + ++ 
Sbjct: 61  DVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQ 113

Query: 158 GEISDKEIDIEVADTSSD 175
             +  K I+  VA     
Sbjct: 114 ALL--KLIEGTVAAVPPQ 129



 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 17  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 68

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 69  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 128

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 129 QGGRKHPQQEFLQVDTSKILFICGGAF 155


>gi|119222481|gb|ABL62438.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + 
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHD 60

Query: 114 VRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           +  ++R     DE+ + A  +    I   + G+       ++    + +          +
Sbjct: 61  IERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQ 120

Query: 169 VADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                 D +N     G + G L+      +  + +G G   + +   +     L   E +
Sbjct: 121 QEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPE 179

Query: 226 RLI 228
            L+
Sbjct: 180 DLL 182



 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 54/200 (27%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++           + +    +  D  + ++++      
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADH 59

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +         
Sbjct: 60  DIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKH 118

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 119 PQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEP 178

Query: 310 ADL-----LPEIQGRFPVRV 324
            DL     +PE  GR P+  
Sbjct: 179 EDLLKFGMIPEFIGRLPIIT 198


>gi|119222225|gb|ABL62310.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222227|gb|ABL62311.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222229|gb|ABL62312.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222231|gb|ABL62313.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222233|gb|ABL62314.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222235|gb|ABL62315.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222237|gb|ABL62316.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222239|gb|ABL62317.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222241|gb|ABL62318.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 199

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + 
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHD 60

Query: 114 VRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           +  ++R     DE+ + A  +    I   + G+       ++    + +          +
Sbjct: 61  IERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQ 120

Query: 169 VADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                 D +N     G + G L+      +  + +G G   + +   +     L   E +
Sbjct: 121 QEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPE 179

Query: 226 RLI 228
            L+
Sbjct: 180 DLL 182



 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 54/201 (26%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++           + +    +  D  + ++++      
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADH 59

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +         
Sbjct: 60  DIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKH 118

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 119 PQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEP 178

Query: 310 ADL-----LPEIQGRFPVRVH 325
            DL     +PE  GR P+   
Sbjct: 179 EDLLKFGMIPEFIGRLPIITA 199


>gi|52855670|gb|AAU88709.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855676|gb|AAU88712.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 39  RRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG 
Sbjct: 1   KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 60

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE II+ L+      V++++R  V         + I          S TR+V  + ++ 
Sbjct: 61  DVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQ 113

Query: 158 GEISDKEIDIEVADTSSD 175
             +  K I+  VA     
Sbjct: 114 ALL--KLIEGTVAAVPPQ 129



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 15  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 66

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 67  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 126

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 127 PPQGGRKHPQQEFLQVDTSKILFICGGAF 155


>gi|119222397|gb|ABL62396.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222399|gb|ABL62397.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222401|gb|ABL62398.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222403|gb|ABL62399.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222405|gb|ABL62400.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222407|gb|ABL62401.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222421|gb|ABL62408.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222423|gb|ABL62409.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus
           NewJersey2]
 gi|119222425|gb|ABL62410.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222427|gb|ABL62411.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222429|gb|ABL62412.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222431|gb|ABL62413.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222433|gb|ABL62414.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222435|gb|ABL62415.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222437|gb|ABL62416.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222439|gb|ABL62417.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + 
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHD 60

Query: 114 VRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
           +  ++R     DE+ + A  +    I   + G+       ++    + +          +
Sbjct: 61  IERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQ 120

Query: 169 VADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
                 D +N     G + G L+      +  + +G G   + +   +     L   E +
Sbjct: 121 QEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPE 179

Query: 226 RLI 228
            L+
Sbjct: 180 DLL 182



 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 54/199 (27%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  ++++           + +    +  D  + ++++      
Sbjct: 1   SNILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADH 59

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-------- 286
            I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +         
Sbjct: 60  DIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKH 118

Query: 287 ---KYGSINTDHILFIASGAF----------------------------------HVSRP 309
              ++  ++T +ILFI  GAF                                      P
Sbjct: 119 PQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEP 178

Query: 310 ADL-----LPEIQGRFPVR 323
            DL     +PE  GR P+ 
Sbjct: 179 EDLLKFGMIPEFIGRLPII 197


>gi|302171548|gb|ADK97701.1| ATP-dependent Clp protease [Escherichia coli]
          Length = 189

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +   E+ +  
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEVTVAA 113

Query: 170 ADTSSD 175
                 
Sbjct: 114 VPPQGG 119



 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+E +  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEVTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|52855648|gb|AAU88698.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 202

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 39  RRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG 
Sbjct: 1   KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 60

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE II+ L+      V++++R  V         + I          S TR+V  + ++ 
Sbjct: 61  DVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQ 113

Query: 158 GEISDKEIDIEVADTSSD 175
             +  K I+  VA     
Sbjct: 114 ALL--KLIEGTVAAVPPQ 129



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 15  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 66

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 67  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 126

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 127 PPQGGRKHPQQEFLQVDTSKILFICGGAF 155


>gi|52855630|gb|AAU88689.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 207

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 39  RRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R +        EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG 
Sbjct: 1   KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 60

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +VE II+ L+      V++++R  V         + I          S TR+V  + ++ 
Sbjct: 61  DVENIIQKLLQKCDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQ 113

Query: 158 GEISDKEIDIEVADTSSD 175
             +  K I+  VA     
Sbjct: 114 ALL--KLIEGTVAAVPPQ 129



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 15  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 66

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 67  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 126

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 127 PPQGGRKHPQQEFLQVDTSKILFICGGAF 155


>gi|119222469|gb|ABL62432.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222471|gb|ABL62433.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222473|gb|ABL62434.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222475|gb|ABL62435.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222477|gb|ABL62436.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222479|gb|ABL62437.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222483|gb|ABL62439.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222485|gb|ABL62440.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222487|gb|ABL62441.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 197

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 115 RESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
             ++R     DE+ + A  +    I   + G+       ++    + +          + 
Sbjct: 61  ERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQ 120

Query: 170 ADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                D +N     G + G L+      +  + +G G   + +   +     L   E + 
Sbjct: 121 EFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPED 179

Query: 227 LI 228
           L+
Sbjct: 180 LL 181



 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 54/199 (27%)

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           N  + G    G   L++  ++++           + +    +  D  + ++++       
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADHD 59

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--------- 286
           I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +          
Sbjct: 60  IERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHP 118

Query: 287 --KYGSINTDHILFIASGAF----------------------------------HVSRPA 310
             ++  ++T +ILFI  GAF                                      P 
Sbjct: 119 QQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPE 178

Query: 311 DL-----LPEIQGRFPVRV 324
           DL     +PE  GR P+  
Sbjct: 179 DLLKFGMIPEFIGRLPIIT 197


>gi|119222243|gb|ABL62319.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222245|gb|ABL62320.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222247|gb|ABL62321.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222249|gb|ABL62322.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222251|gb|ABL62323.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222253|gb|ABL62324.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 198

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           NILL+GPTG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60

Query: 115 RESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
             ++R     DE+ + A  +    I   + G+       ++    + +          + 
Sbjct: 61  ERAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQ 120

Query: 170 ADTSSDISNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                D +N     G + G L+      +  + +G G   + +   +     L   E + 
Sbjct: 121 EFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPED 179

Query: 227 LI 228
           L+
Sbjct: 180 LL 181



 Score = 80.7 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 54/200 (27%)

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           N  + G    G   L++  ++++           + +    +  D  + ++++       
Sbjct: 1   NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADHD 59

Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST--------- 286
           I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +          
Sbjct: 60  IERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHP 118

Query: 287 --KYGSINTDHILFIASGAF----------------------------------HVSRPA 310
             ++  ++T +ILFI  GAF                                      P 
Sbjct: 119 QQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPE 178

Query: 311 DL-----LPEIQGRFPVRVH 325
           DL     +PE  GR P+   
Sbjct: 179 DLLKFGMIPEFIGRLPIITA 198


>gi|52855590|gb|AAU88669.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 207

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
               V++++R     DE+ + +  +    I   + G+       ++    +         
Sbjct: 71  CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 130

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPEL 219
              +      D S      G +   L+       E  S +    + K       +    L
Sbjct: 131 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGAKVKAKSDKASE-GELL 189

Query: 220 MRDESDRLI 228
            + E + LI
Sbjct: 190 AQVEPEDLI 198



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 13  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 64

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 65  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 124

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 125 PPQGGRKHPQQEFLQVDTSKILFICGGAF 153


>gi|52855626|gb|AAU88687.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 203

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 16  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 67

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 68  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 127

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 128 QGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52855552|gb|AAU88650.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 204

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 71  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 121

Query: 170 ADTSSD 175
           A     
Sbjct: 122 AAVPPQ 127



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 13  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 64

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 65  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 124

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 125 PPQGGRKHPQQEFLQVDTSKILFICGGAF 153


>gi|52855622|gb|AAU88685.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 202

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 16  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 67

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 68  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 127

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 128 QGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|297495104|gb|ADI41278.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
               V++++R     DE+ + +  +    I   + G+       ++    +         
Sbjct: 61  CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 120

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNL-----SELFSKVMGSGRKKKIRMSVQKCYPEL 219
              +      D S      G +   L+       E  S +      K   +   +    L
Sbjct: 121 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSVKASE-GELL 179

Query: 220 MRDESDRLI 228
            + E + LI
Sbjct: 180 AQVEPEDLI 188



 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|52855620|gb|AAU88684.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 197

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 8   ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 67

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 68  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 118

Query: 170 ADTSSD 175
           A     
Sbjct: 119 AAVPPQ 124



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L+E  ++++          ++ +              D++ + + 
Sbjct: 12  SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENIIQK 63

Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-- 286
            +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +   
Sbjct: 64  LLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 123

Query: 287 ---------KYGSINTDHILFIASGAF 304
                    ++  ++T  ILFI  GAF
Sbjct: 124 QGGRKHPQQEFLQVDTSKILFICGGAF 150


>gi|52855172|gb|AAU88460.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855506|gb|AAU88627.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855512|gb|AAU88630.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855702|gb|AAU88725.1| clp protease ATP-binding subunit [Shigella sonnei]
          Length = 202

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 71  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 121

Query: 170 ADTSSD 175
           A     
Sbjct: 122 AAVPPQ 127



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 13  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 64

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 65  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 124

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 125 PPQGGRKHPQQEFLQVDTSKILFICGGAF 153


>gi|52855608|gb|AAU88678.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855646|gb|AAU88697.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 207

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|52697082|gb|AAU86278.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855594|gb|AAU88671.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 201

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 71  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 121

Query: 170 ADTSSD 175
           A     
Sbjct: 122 AAVPPQ 127



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 13  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 64

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 65  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 124

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 125 PPQGGRKHPQQEFLQVDTSKILFICGGAF 153


>gi|52697086|gb|AAU86280.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855494|gb|AAU88621.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855554|gb|AAU88651.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855584|gb|AAU88666.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855634|gb|AAU88691.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 201

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|52855174|gb|AAU88461.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855534|gb|AAU88641.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855656|gb|AAU88702.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 200

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|52855518|gb|AAU88633.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855528|gb|AAU88638.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855540|gb|AAU88644.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 203

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 11  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 71  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 121

Query: 170 ADTSSD 175
           A     
Sbjct: 122 AAVPPQ 127



 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 13  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 64

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 65  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 124

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 125 PPQGGRKHPQQEFLQVDTSKILFICGGAF 153


>gi|52697078|gb|AAU86276.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697080|gb|AAU86277.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 212

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|294855151|gb|ADF44513.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B827]
 gi|294855153|gb|ADF44514.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1492]
 gi|294855155|gb|ADF44515.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E807]
 gi|294855157|gb|ADF44516.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. H442]
 gi|294855159|gb|ADF44517.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. M863]
 gi|294855161|gb|ADF44518.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW10509]
 gi|294855163|gb|ADF44519.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW11930]
 gi|294855165|gb|ADF44520.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW11966]
 gi|294855167|gb|ADF44521.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B1147]
 gi|294855169|gb|ADF44522.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09231]
 gi|294855171|gb|ADF44523.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09276]
 gi|294855173|gb|ADF44524.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09254]
 gi|294855175|gb|ADF44525.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09266]
 gi|294855177|gb|ADF44526.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TA04]
 gi|294855179|gb|ADF44527.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B685]
 gi|294855181|gb|ADF44528.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14182]
 gi|294855183|gb|ADF44529.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii TW11588]
 gi|294855185|gb|ADF44530.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. H605]
 gi|294855187|gb|ADF44531.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B49]
 gi|294855189|gb|ADF44532.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW09308]
 gi|294855191|gb|ADF44533.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B1225]
 gi|294855193|gb|ADF44534.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. B646]
 gi|294855195|gb|ADF44535.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1118]
 gi|294855197|gb|ADF44536.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1195]
 gi|294855199|gb|ADF44537.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E1196]
 gi|294855201|gb|ADF44538.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E471]
 gi|294855203|gb|ADF44539.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E472]
 gi|294855205|gb|ADF44540.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. E620]
 gi|294855207|gb|ADF44541.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. M1108]
 gi|294855209|gb|ADF44542.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TA290]
 gi|294855211|gb|ADF44543.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14263]
 gi|294855213|gb|ADF44544.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14264]
 gi|294855215|gb|ADF44545.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14265]
 gi|294855217|gb|ADF44546.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14266]
 gi|294855219|gb|ADF44547.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. TW14267]
 gi|294855221|gb|ADF44548.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. RL325/96]
 gi|294855223|gb|ADF44549.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia sp. Z205]
 gi|294855225|gb|ADF44550.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855227|gb|ADF44551.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855229|gb|ADF44552.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855231|gb|ADF44553.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855233|gb|ADF44554.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855235|gb|ADF44555.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855237|gb|ADF44556.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia albertii]
 gi|294855239|gb|ADF44557.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia coli]
 gi|294855241|gb|ADF44558.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia coli]
 gi|294855245|gb|ADF44560.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
 gi|294855247|gb|ADF44561.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
          Length = 175

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|52855596|gb|AAU88672.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855610|gb|AAU88679.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855618|gb|AAU88683.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855638|gb|AAU88693.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855640|gb|AAU88694.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855652|gb|AAU88700.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855654|gb|AAU88701.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855706|gb|AAU88727.1| clp protease ATP-binding subunit [Shigella sp. K-319]
          Length = 203

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52855606|gb|AAU88677.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855614|gb|AAU88681.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855616|gb|AAU88682.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 198

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 9   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 68

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 69  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 119

Query: 170 ADTSSD 175
           A     
Sbjct: 120 AAVPPQ 125



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 11  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 62

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 63  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 122

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 123 PPQGGRKHPQQEFLQVDTSKILFICGGAF 151


>gi|52855538|gb|AAU88643.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|52855602|gb|AAU88675.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
          Length = 202

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|52855578|gb|AAU88663.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 202

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52697074|gb|AAU86274.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 207

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52855508|gb|AAU88628.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 211

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|108758848|ref|YP_628809.1| ATP-binding protein [Myxococcus xanthus DK 1622]
 gi|108462728|gb|ABF87913.1| ATP-binding protein, ClpX family [Myxococcus xanthus DK 1622]
          Length = 386

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 7   FSPREIVSEL-DRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPT 62
            SPREI   L D    GQ +A+RA ++      RR +         +  M +N L +GPT
Sbjct: 34  LSPREIDERLSDLGYRGQTEARRAASVLAYRHLRRIRHLFLEGLAPEPGMRENCLFLGPT 93

Query: 63  GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G GKT +   L R +   P +  + T+F+E GYVG +V  ++  L + A   
Sbjct: 94  GSGKTFLVELLFREILAVPTVLADATQFSETGYVGDDVSTLLSRLYEAADRN 145



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 67/220 (30%)

Query: 243 NYGIVFLDEFDKIVARDS-------GNGIGVSREGVQRDLLPLV--EGSSVSTKYGS--- 290
             G+V +DEFDK+    S            VS  GVQR LL ++    +     +G    
Sbjct: 150 GCGVVCMDEFDKLATSRSDSRFAGQQTTKDVSGFGVQRSLLHMLSAPSADFPPDFGFTSR 209

Query: 291 --INTDH---ILFIASGAFH---------------------------------------- 305
              +T     + FIA GAF                                         
Sbjct: 210 QRPDTMELACVTFIACGAFSGLSATAEGLARSEHLGFGREPLPARVESIATRVTEEQLEQ 269

Query: 306 --VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                    +PE+ GRF   V    L+      IL   + N++  Y+   + EG+ L   
Sbjct: 270 TTAFARYGFIPELIGRFNRLVSFSPLDAGTLDDIL---QHNVLRAYEREFEQEGLRLQVD 326

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
            +  + +   A+   +     GAR L+T +  +LE  ++ 
Sbjct: 327 TEVREFVVARALKRET-----GARGLRTTLAPLLERAAYE 361


>gi|52855516|gb|AAU88632.1| clp protease ATP-binding subunit [Shigella dysenteriae]
          Length = 204

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52855692|gb|AAU88720.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 204

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|52697084|gb|AAU86279.1| clp protease ATP-binding subunit [Escherichia albertii]
 gi|52855612|gb|AAU88680.1| clp protease ATP-binding subunit [Shigella dysenteriae]
 gi|52855644|gb|AAU88696.1| clp protease ATP-binding subunit [Shigella flexneri 2a]
 gi|52855650|gb|AAU88699.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855682|gb|AAU88715.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855690|gb|AAU88719.1| clp protease ATP-binding subunit [Shigella boydii]
          Length = 199

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 10  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 70  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 120

Query: 170 ADTSSD 175
           A     
Sbjct: 121 AAVPPQ 126



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 12  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 63

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 64  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 123

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 124 PPQGGRKHPQQEFLQVDTSKILFICGGAF 152


>gi|213621494|ref|ZP_03374277.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 67

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 34 LRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92
          + N ++R +        EL   NILL GPTG GKT ++  LARL   PF   + T  TE 
Sbjct: 1  VYNHYKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEA 60

Query: 93 GYVGRNV 99
          GYVG +V
Sbjct: 61 GYVGEDV 67


>gi|52855664|gb|AAU88706.1| clp protease ATP-binding subunit [Shigella flexneri]
 gi|52855666|gb|AAU88707.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855684|gb|AAU88716.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855700|gb|AAU88724.1| clp protease ATP-binding subunit [Shigella sonnei]
 gi|52855704|gb|AAU88726.1| clp protease ATP-binding subunit [Shigella sp. K-380]
          Length = 201

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52697070|gb|AAU86272.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52697072|gb|AAU86273.1| clp protease ATP-binding subunit [Shigella boydii]
 gi|52855588|gb|AAU88668.1| clp protease ATP-binding subunit [Shigella flexneri]
          Length = 206

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|52697076|gb|AAU86275.1| clp protease ATP-binding subunit [Escherichia albertii]
          Length = 199

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|297495228|gb|ADI41340.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|57996842|emb|CAI45869.1| negative response regulator [Escherichia coli]
          Length = 200

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 12  ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 72  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 122

Query: 170 ADTSSD 175
           A     
Sbjct: 123 AAVPPQ 128



 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 14  GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 65

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 66  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 125

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 126 PPQGGRKHPQQEFLQVDTSKILFICGGAF 154


>gi|3834447|gb|AAC70949.1| ATP-dependent Clp protease ATP-binding subunit Clpx [Streptomyces
           coelicolor A3(2)]
          Length = 139

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 7/74 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-------DLRDELMPKNILLVG 60
            PREI   L+ Y++GQ+ AK+A+++A+ N ++R Q          +   EL   NILL+G
Sbjct: 63  KPREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLG 122

Query: 61  PTGVGKTAISRRLA 74
           PTG GKT +++ LA
Sbjct: 123 PTGSGKTLLAQTLA 136


>gi|297494770|gb|ADI41111.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|223972210|dbj|BAH23282.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
               V++++R     DE+ + +  +    I   + G+       ++    +         
Sbjct: 61  CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 120

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELF----SKVMGSGRKKKIRMSVQKCYPELM 220
              +      D S      G +   L+    +       +G G   K +         L 
Sbjct: 121 KHPQQEFLQVDTSKILFICGGAFAGLDKVISYRVETGSGIGFGATVKAKSDKASEGELLA 180

Query: 221 RDESDRLI 228
           + E + LI
Sbjct: 181 QVEPEDLI 188



 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|125615424|gb|ABN46172.1| clp protease ATP-binding subunit [Escherichia coli]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|168983667|dbj|BAG11712.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983669|dbj|BAG11713.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +   E  I  
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAA 113

Query: 170 ADTSSD 175
                 
Sbjct: 114 VPPQGG 119



 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|125615302|gb|ABN46111.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615304|gb|ABN46112.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615306|gb|ABN46113.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615308|gb|ABN46114.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615310|gb|ABN46115.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615312|gb|ABN46116.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615314|gb|ABN46117.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615316|gb|ABN46118.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615318|gb|ABN46119.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615320|gb|ABN46120.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615322|gb|ABN46121.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615324|gb|ABN46122.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615326|gb|ABN46123.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615328|gb|ABN46124.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615330|gb|ABN46125.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615332|gb|ABN46126.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615334|gb|ABN46127.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615336|gb|ABN46128.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615338|gb|ABN46129.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615340|gb|ABN46130.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615342|gb|ABN46131.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615344|gb|ABN46132.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615346|gb|ABN46133.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615348|gb|ABN46134.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615350|gb|ABN46135.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615352|gb|ABN46136.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615354|gb|ABN46137.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615356|gb|ABN46138.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615358|gb|ABN46139.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615360|gb|ABN46140.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615362|gb|ABN46141.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615364|gb|ABN46142.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615366|gb|ABN46143.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615368|gb|ABN46144.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615370|gb|ABN46145.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615372|gb|ABN46146.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615374|gb|ABN46147.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615376|gb|ABN46148.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615378|gb|ABN46149.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615380|gb|ABN46150.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615382|gb|ABN46151.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615384|gb|ABN46152.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615386|gb|ABN46153.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615388|gb|ABN46154.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615390|gb|ABN46155.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615392|gb|ABN46156.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615394|gb|ABN46157.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615396|gb|ABN46158.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615398|gb|ABN46159.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615400|gb|ABN46160.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615402|gb|ABN46161.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615404|gb|ABN46162.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615406|gb|ABN46163.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615408|gb|ABN46164.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615410|gb|ABN46165.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615412|gb|ABN46166.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615414|gb|ABN46167.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615416|gb|ABN46168.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615418|gb|ABN46169.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615420|gb|ABN46170.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615422|gb|ABN46171.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615426|gb|ABN46173.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615428|gb|ABN46174.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615430|gb|ABN46175.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615432|gb|ABN46176.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615434|gb|ABN46177.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615436|gb|ABN46178.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615438|gb|ABN46179.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615440|gb|ABN46180.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615442|gb|ABN46181.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615444|gb|ABN46182.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615446|gb|ABN46183.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615448|gb|ABN46184.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615450|gb|ABN46185.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615452|gb|ABN46186.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615454|gb|ABN46187.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615456|gb|ABN46188.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615458|gb|ABN46189.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615460|gb|ABN46190.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615462|gb|ABN46191.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615464|gb|ABN46192.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615466|gb|ABN46193.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615468|gb|ABN46194.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615470|gb|ABN46195.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615472|gb|ABN46196.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615474|gb|ABN46197.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615476|gb|ABN46198.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615478|gb|ABN46199.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615480|gb|ABN46200.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615482|gb|ABN46201.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615484|gb|ABN46202.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615486|gb|ABN46203.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615488|gb|ABN46204.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615490|gb|ABN46205.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615492|gb|ABN46206.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615494|gb|ABN46207.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615496|gb|ABN46208.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615498|gb|ABN46209.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615500|gb|ABN46210.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615502|gb|ABN46211.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615504|gb|ABN46212.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615506|gb|ABN46213.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615508|gb|ABN46214.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615510|gb|ABN46215.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615512|gb|ABN46216.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615514|gb|ABN46217.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615516|gb|ABN46218.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615518|gb|ABN46219.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615520|gb|ABN46220.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615522|gb|ABN46221.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615524|gb|ABN46222.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615526|gb|ABN46223.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615528|gb|ABN46224.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615530|gb|ABN46225.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615532|gb|ABN46226.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615534|gb|ABN46227.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615536|gb|ABN46228.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615538|gb|ABN46229.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615540|gb|ABN46230.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615542|gb|ABN46231.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615544|gb|ABN46232.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615546|gb|ABN46233.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615548|gb|ABN46234.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615550|gb|ABN46235.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615552|gb|ABN46236.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615554|gb|ABN46237.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615556|gb|ABN46238.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|125615558|gb|ABN46239.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|134290119|gb|ABO70250.1| CplX [Escherichia coli]
 gi|134290121|gb|ABO70251.1| CplX [Escherichia coli]
 gi|134290123|gb|ABO70252.1| CplX [Escherichia coli]
 gi|134290125|gb|ABO70253.1| CplX [Escherichia coli]
 gi|134290127|gb|ABO70254.1| CplX [Escherichia coli]
 gi|134290129|gb|ABO70255.1| CplX [Escherichia coli]
 gi|134290131|gb|ABO70256.1| CplX [Escherichia coli]
 gi|134290133|gb|ABO70257.1| CplX [Escherichia coli]
 gi|134290135|gb|ABO70258.1| CplX [Escherichia coli]
 gi|134290137|gb|ABO70259.1| CplX [Escherichia coli]
 gi|134290139|gb|ABO70260.1| CplX [Escherichia coli]
 gi|134290141|gb|ABO70261.1| CplX [Escherichia coli]
 gi|134290143|gb|ABO70262.1| CplX [Escherichia coli]
 gi|134290145|gb|ABO70263.1| CplX [Escherichia coli]
 gi|134290147|gb|ABO70264.1| CplX [Escherichia coli]
 gi|134290149|gb|ABO70265.1| CplX [Escherichia coli]
 gi|134290151|gb|ABO70266.1| CplX [Escherichia coli]
 gi|134290153|gb|ABO70267.1| CplX [Escherichia coli]
 gi|134290155|gb|ABO70268.1| CplX [Escherichia coli]
 gi|134290157|gb|ABO70269.1| CplX [Escherichia coli]
 gi|134290159|gb|ABO70270.1| CplX [Escherichia coli]
 gi|134290161|gb|ABO70271.1| CplX [Escherichia coli]
 gi|134290163|gb|ABO70272.1| CplX [Escherichia coli]
 gi|168983657|dbj|BAG11707.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983659|dbj|BAG11708.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983661|dbj|BAG11709.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983663|dbj|BAG11710.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983665|dbj|BAG11711.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H7]
 gi|168983671|dbj|BAG11714.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|168983673|dbj|BAG11715.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|168983675|dbj|BAG11716.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O55:H6]
 gi|223972206|dbj|BAH23280.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|223972208|dbj|BAH23281.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|223972212|dbj|BAH23283.1| clp protease ATP-binding subunit [Escherichia coli]
 gi|239829713|gb|ACS28706.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829715|gb|ACS28707.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829717|gb|ACS28708.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829719|gb|ACS28709.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829721|gb|ACS28710.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829723|gb|ACS28711.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829725|gb|ACS28712.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829727|gb|ACS28713.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829729|gb|ACS28714.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829731|gb|ACS28715.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829733|gb|ACS28716.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829735|gb|ACS28717.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829737|gb|ACS28718.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829739|gb|ACS28719.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829741|gb|ACS28720.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829743|gb|ACS28721.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829745|gb|ACS28722.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829747|gb|ACS28723.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829749|gb|ACS28724.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829751|gb|ACS28725.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829753|gb|ACS28726.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829755|gb|ACS28727.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829757|gb|ACS28728.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829759|gb|ACS28729.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829761|gb|ACS28730.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829763|gb|ACS28731.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829765|gb|ACS28732.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829767|gb|ACS28733.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829769|gb|ACS28734.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829771|gb|ACS28735.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829773|gb|ACS28736.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829775|gb|ACS28737.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829777|gb|ACS28738.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829779|gb|ACS28739.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829781|gb|ACS28740.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829783|gb|ACS28741.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829785|gb|ACS28742.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829787|gb|ACS28743.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829789|gb|ACS28744.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829791|gb|ACS28745.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829793|gb|ACS28746.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829795|gb|ACS28747.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829797|gb|ACS28748.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829799|gb|ACS28749.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829801|gb|ACS28750.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829803|gb|ACS28751.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829805|gb|ACS28752.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829807|gb|ACS28753.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829809|gb|ACS28754.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829811|gb|ACS28755.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829813|gb|ACS28756.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829815|gb|ACS28757.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829817|gb|ACS28758.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829819|gb|ACS28759.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829821|gb|ACS28760.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829823|gb|ACS28761.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829825|gb|ACS28762.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829827|gb|ACS28763.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829829|gb|ACS28764.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829831|gb|ACS28765.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829833|gb|ACS28766.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829835|gb|ACS28767.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829837|gb|ACS28768.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829839|gb|ACS28769.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829841|gb|ACS28770.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829843|gb|ACS28771.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829845|gb|ACS28772.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829847|gb|ACS28773.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829849|gb|ACS28774.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829851|gb|ACS28775.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829853|gb|ACS28776.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829855|gb|ACS28777.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829857|gb|ACS28778.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829859|gb|ACS28779.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829861|gb|ACS28780.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829863|gb|ACS28781.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829865|gb|ACS28782.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829867|gb|ACS28783.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829869|gb|ACS28784.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829871|gb|ACS28785.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829873|gb|ACS28786.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829875|gb|ACS28787.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829877|gb|ACS28788.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829879|gb|ACS28789.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829881|gb|ACS28790.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829883|gb|ACS28791.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829885|gb|ACS28792.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829887|gb|ACS28793.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829889|gb|ACS28794.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829891|gb|ACS28795.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829893|gb|ACS28796.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|239829895|gb|ACS28797.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|258642951|gb|ACV86039.1| ATP-dependent Clp protease [Shigella flexneri]
 gi|297494744|gb|ADI41098.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494746|gb|ADI41099.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494748|gb|ADI41100.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494750|gb|ADI41101.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494752|gb|ADI41102.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494754|gb|ADI41103.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494756|gb|ADI41104.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494758|gb|ADI41105.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494760|gb|ADI41106.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494762|gb|ADI41107.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494764|gb|ADI41108.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494766|gb|ADI41109.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494768|gb|ADI41110.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494772|gb|ADI41112.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494774|gb|ADI41113.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494776|gb|ADI41114.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494778|gb|ADI41115.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494780|gb|ADI41116.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494782|gb|ADI41117.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494784|gb|ADI41118.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494786|gb|ADI41119.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494788|gb|ADI41120.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494790|gb|ADI41121.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494792|gb|ADI41122.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494794|gb|ADI41123.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494796|gb|ADI41124.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494798|gb|ADI41125.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494800|gb|ADI41126.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494802|gb|ADI41127.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494804|gb|ADI41128.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494806|gb|ADI41129.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494808|gb|ADI41130.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494810|gb|ADI41131.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494812|gb|ADI41132.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494814|gb|ADI41133.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494816|gb|ADI41134.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494818|gb|ADI41135.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494820|gb|ADI41136.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494822|gb|ADI41137.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494824|gb|ADI41138.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494826|gb|ADI41139.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494828|gb|ADI41140.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494830|gb|ADI41141.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494832|gb|ADI41142.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494834|gb|ADI41143.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494836|gb|ADI41144.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494838|gb|ADI41145.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494840|gb|ADI41146.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494842|gb|ADI41147.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494844|gb|ADI41148.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494846|gb|ADI41149.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494848|gb|ADI41150.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494850|gb|ADI41151.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494852|gb|ADI41152.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494854|gb|ADI41153.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494856|gb|ADI41154.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494858|gb|ADI41155.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494860|gb|ADI41156.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494862|gb|ADI41157.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494864|gb|ADI41158.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494866|gb|ADI41159.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494868|gb|ADI41160.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494870|gb|ADI41161.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494872|gb|ADI41162.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494874|gb|ADI41163.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494876|gb|ADI41164.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494878|gb|ADI41165.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494880|gb|ADI41166.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494882|gb|ADI41167.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494884|gb|ADI41168.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494886|gb|ADI41169.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494888|gb|ADI41170.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494890|gb|ADI41171.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494892|gb|ADI41172.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494894|gb|ADI41173.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494896|gb|ADI41174.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494898|gb|ADI41175.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494900|gb|ADI41176.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494902|gb|ADI41177.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494904|gb|ADI41178.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494906|gb|ADI41179.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494908|gb|ADI41180.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494910|gb|ADI41181.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494912|gb|ADI41182.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494914|gb|ADI41183.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494916|gb|ADI41184.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494918|gb|ADI41185.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494920|gb|ADI41186.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494922|gb|ADI41187.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494924|gb|ADI41188.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494926|gb|ADI41189.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494928|gb|ADI41190.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494930|gb|ADI41191.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494932|gb|ADI41192.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494934|gb|ADI41193.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494936|gb|ADI41194.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494938|gb|ADI41195.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494940|gb|ADI41196.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494942|gb|ADI41197.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494944|gb|ADI41198.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494946|gb|ADI41199.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494948|gb|ADI41200.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494950|gb|ADI41201.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494952|gb|ADI41202.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494954|gb|ADI41203.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494956|gb|ADI41204.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494958|gb|ADI41205.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494960|gb|ADI41206.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494962|gb|ADI41207.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494964|gb|ADI41208.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494966|gb|ADI41209.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494968|gb|ADI41210.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494970|gb|ADI41211.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494972|gb|ADI41212.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494974|gb|ADI41213.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494976|gb|ADI41214.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494978|gb|ADI41215.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494980|gb|ADI41216.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494982|gb|ADI41217.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494984|gb|ADI41218.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494986|gb|ADI41219.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494988|gb|ADI41220.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494990|gb|ADI41221.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494992|gb|ADI41222.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494994|gb|ADI41223.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494996|gb|ADI41224.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297494998|gb|ADI41225.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495000|gb|ADI41226.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495002|gb|ADI41227.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495004|gb|ADI41228.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495006|gb|ADI41229.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495008|gb|ADI41230.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495010|gb|ADI41231.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495012|gb|ADI41232.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495014|gb|ADI41233.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495016|gb|ADI41234.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495018|gb|ADI41235.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495020|gb|ADI41236.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495022|gb|ADI41237.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495024|gb|ADI41238.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495026|gb|ADI41239.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495028|gb|ADI41240.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495030|gb|ADI41241.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495032|gb|ADI41242.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495034|gb|ADI41243.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495036|gb|ADI41244.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495038|gb|ADI41245.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495040|gb|ADI41246.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495042|gb|ADI41247.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495044|gb|ADI41248.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495046|gb|ADI41249.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495048|gb|ADI41250.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495050|gb|ADI41251.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495052|gb|ADI41252.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495054|gb|ADI41253.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495056|gb|ADI41254.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495058|gb|ADI41255.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495060|gb|ADI41256.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495062|gb|ADI41257.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495064|gb|ADI41258.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495066|gb|ADI41259.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495068|gb|ADI41260.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495070|gb|ADI41261.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495072|gb|ADI41262.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495074|gb|ADI41263.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495076|gb|ADI41264.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495078|gb|ADI41265.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495080|gb|ADI41266.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495082|gb|ADI41267.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495084|gb|ADI41268.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495086|gb|ADI41269.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495088|gb|ADI41270.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495090|gb|ADI41271.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495092|gb|ADI41272.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495094|gb|ADI41273.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495096|gb|ADI41274.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495098|gb|ADI41275.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495100|gb|ADI41276.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495102|gb|ADI41277.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495106|gb|ADI41279.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495108|gb|ADI41280.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495110|gb|ADI41281.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495112|gb|ADI41282.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495114|gb|ADI41283.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495116|gb|ADI41284.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495118|gb|ADI41285.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495120|gb|ADI41286.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495122|gb|ADI41287.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495124|gb|ADI41288.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495126|gb|ADI41289.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495128|gb|ADI41290.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495130|gb|ADI41291.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495132|gb|ADI41292.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495134|gb|ADI41293.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495136|gb|ADI41294.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495138|gb|ADI41295.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495140|gb|ADI41296.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495142|gb|ADI41297.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495144|gb|ADI41298.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495146|gb|ADI41299.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495148|gb|ADI41300.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495150|gb|ADI41301.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495152|gb|ADI41302.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495154|gb|ADI41303.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495156|gb|ADI41304.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495158|gb|ADI41305.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495160|gb|ADI41306.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495162|gb|ADI41307.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495164|gb|ADI41308.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495166|gb|ADI41309.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495168|gb|ADI41310.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495170|gb|ADI41311.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495172|gb|ADI41312.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495174|gb|ADI41313.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495176|gb|ADI41314.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495178|gb|ADI41315.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495180|gb|ADI41316.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495182|gb|ADI41317.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495184|gb|ADI41318.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495186|gb|ADI41319.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495188|gb|ADI41320.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495190|gb|ADI41321.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495192|gb|ADI41322.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495194|gb|ADI41323.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495196|gb|ADI41324.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495198|gb|ADI41325.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495200|gb|ADI41326.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495202|gb|ADI41327.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495204|gb|ADI41328.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495206|gb|ADI41329.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495208|gb|ADI41330.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495210|gb|ADI41331.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495212|gb|ADI41332.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495214|gb|ADI41333.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495216|gb|ADI41334.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495218|gb|ADI41335.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495220|gb|ADI41336.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495222|gb|ADI41337.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495224|gb|ADI41338.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495226|gb|ADI41339.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495230|gb|ADI41341.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495232|gb|ADI41342.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495234|gb|ADI41343.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495236|gb|ADI41344.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495238|gb|ADI41345.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495240|gb|ADI41346.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495242|gb|ADI41347.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495244|gb|ADI41348.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495246|gb|ADI41349.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495248|gb|ADI41350.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495250|gb|ADI41351.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495252|gb|ADI41352.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495254|gb|ADI41353.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495256|gb|ADI41354.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495258|gb|ADI41355.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495260|gb|ADI41356.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495262|gb|ADI41357.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495264|gb|ADI41358.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495266|gb|ADI41359.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495268|gb|ADI41360.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495270|gb|ADI41361.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495272|gb|ADI41362.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495274|gb|ADI41363.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495276|gb|ADI41364.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495278|gb|ADI41365.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495280|gb|ADI41366.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495282|gb|ADI41367.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495284|gb|ADI41368.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495286|gb|ADI41369.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495288|gb|ADI41370.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495290|gb|ADI41371.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495292|gb|ADI41372.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495294|gb|ADI41373.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495296|gb|ADI41374.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495298|gb|ADI41375.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495300|gb|ADI41376.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495302|gb|ADI41377.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495304|gb|ADI41378.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495306|gb|ADI41379.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495308|gb|ADI41380.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495310|gb|ADI41381.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495312|gb|ADI41382.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495314|gb|ADI41383.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495316|gb|ADI41384.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495318|gb|ADI41385.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495320|gb|ADI41386.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495322|gb|ADI41387.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495324|gb|ADI41388.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495326|gb|ADI41389.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495328|gb|ADI41390.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495330|gb|ADI41391.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495332|gb|ADI41392.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495334|gb|ADI41393.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495336|gb|ADI41394.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495338|gb|ADI41395.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495340|gb|ADI41396.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495342|gb|ADI41397.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495344|gb|ADI41398.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495346|gb|ADI41399.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495348|gb|ADI41400.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495350|gb|ADI41401.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495352|gb|ADI41402.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495354|gb|ADI41403.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495356|gb|ADI41404.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495358|gb|ADI41405.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495360|gb|ADI41406.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495362|gb|ADI41407.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495364|gb|ADI41408.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495366|gb|ADI41409.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495368|gb|ADI41410.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495370|gb|ADI41411.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495372|gb|ADI41412.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495374|gb|ADI41413.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495376|gb|ADI41414.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495378|gb|ADI41415.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495380|gb|ADI41416.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495382|gb|ADI41417.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495384|gb|ADI41418.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495386|gb|ADI41419.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495388|gb|ADI41420.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495390|gb|ADI41421.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495392|gb|ADI41422.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495394|gb|ADI41423.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495396|gb|ADI41424.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495398|gb|ADI41425.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495400|gb|ADI41426.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495402|gb|ADI41427.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495404|gb|ADI41428.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495406|gb|ADI41429.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495408|gb|ADI41430.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495410|gb|ADI41431.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495412|gb|ADI41432.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495414|gb|ADI41433.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495416|gb|ADI41434.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495418|gb|ADI41435.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495420|gb|ADI41436.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495422|gb|ADI41437.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495424|gb|ADI41438.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495426|gb|ADI41439.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495428|gb|ADI41440.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495430|gb|ADI41441.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495432|gb|ADI41442.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495434|gb|ADI41443.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495436|gb|ADI41444.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495438|gb|ADI41445.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495440|gb|ADI41446.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495442|gb|ADI41447.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495444|gb|ADI41448.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495446|gb|ADI41449.1| ATP-dependent Clp protease protein [Escherichia coli]
 gi|297495448|gb|ADI41450.1| ATP-dependent Clp protease protein [Escherichia coli]
          Length = 189

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   NILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             SN  + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|299483192|gb|ADJ19335.1| putative ATP-dependent protease ATP-binding subunit ClpX [Treponema
           primitia ZAS-2]
          Length = 230

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 54/227 (23%)

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           SN  + G    G   L++  +K +          ++ +    +  D  + L+ +      
Sbjct: 6   SNVLLIGPTGTGKTLLAKTLAKKLKVPFAIVDATTLTEAG-YVGEDVENILLKLIQSAGG 64

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGS--SVSTKYG--- 289
           +I   E  GIV++DE DKI  +     I   VS EGVQ+ LL ++EG+  SV  + G   
Sbjct: 65  NIASAE-RGIVYIDEIDKIARKGENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKH 123

Query: 290 ------SINTDHILFIASGA----------------------------------FHVSRP 309
                  I+T +ILFI  GA                                  +    P
Sbjct: 124 PNQEMIRIDTTNILFICGGAFVGLDKYIEQRVVQHPMGFGADVKERTGRNLKEMYDALHP 183

Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351
            DL     +PE  GR P+ V L+ + + DFR I+T+  + ++ Q + 
Sbjct: 184 DDLIQFGMIPEFIGRLPITVSLEEMKREDFRGIITEPRNAIVKQSQA 230



 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 5/147 (3%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           E+   N+LL+GPTG GKT +++ LA+    PF  V+ T  TE GYVG +VE I+  L+  
Sbjct: 2   EIEKSNVLLIGPTGTGKTLLAKTLAKKLKVPFAIVDATTLTEAGYVGEDVENILLKLIQS 61

Query: 110 AINIVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
           A   +  + R     DE+ + A       I   + G+       ++    +         
Sbjct: 62  AGGNIASAERGIVYIDEIDKIARKGENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGR 121

Query: 165 IDIEVADTSSDISNFDIPGGASVGILN 191
                     D +N     G +   L+
Sbjct: 122 KHPNQEMIRIDTTNILFICGGAFVGLD 148


>gi|294855243|gb|ADF44559.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit
           [Escherichia fergusonii]
          Length = 175

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL    ILL+GPTG GKT ++  LARL   PF   + T  TE GYVG +VE II+ L+  
Sbjct: 1   ELGKSTILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
               V++++R  V         + I          S TR+V  + ++   +  K I+  V
Sbjct: 61  CDYDVQKAQRGIVY-------IDEIDKISRKSDNPSITRDVSGEGVQQALL--KLIEGTV 111

Query: 170 ADTSSD 175
           A     
Sbjct: 112 AAVPPQ 117



 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 27/149 (18%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             S   + G    G   L+E  ++++          ++ +              D++ + 
Sbjct: 3   GKSTILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA--------GYVGEDVENII 54

Query: 235 RDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST 286
           +  +Q  +        GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  + 
Sbjct: 55  QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 114

Query: 287 -----------KYGSINTDHILFIASGAF 304
                      ++  ++T  ILFI  GAF
Sbjct: 115 PPQGGRKHPQQEFLQVDTSKILFICGGAF 143


>gi|115373589|ref|ZP_01460885.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825050|ref|YP_003957408.1| ATP-binding protein, clpx family [Stigmatella aurantiaca DW4/3-1]
 gi|115369431|gb|EAU68370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398122|gb|ADO75581.1| ATP-binding protein, ClpX family [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 7   FSPREIVSELDRYII-GQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPT 62
            SP+EI   L +    GQ++A+RA A+      RR +         +    +N L +GPT
Sbjct: 28  LSPKEIDGRLTQLGYRGQEEARRAAAVLAYRHVRRVRRLYLEGIPPEGAARENCLFLGPT 87

Query: 63  GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT +   L R +   P +  + T+F+E GYVG +V  ++  L + A
Sbjct: 88  GSGKTYLVELLFREILSVPTVMADATQFSETGYVGDDVNTLVSRLYEAA 136



 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 67/220 (30%)

Query: 243 NYGIVFLDEFDKIVARDS-------GNGIGVSREGVQRDLLPLVEGSSV--STKYGSINT 293
             G++ +DEFDK+    S            VS  GVQR LL L+  S V     +G  + 
Sbjct: 144 GCGVICMDEFDKLATSRSDSRFAGQQTTKDVSGFGVQRSLLHLLSASEVDFPPDFGFTSR 203

Query: 294 DHIL--------FIASGAFHVSR------------------------------------- 308
              L        FIA GAF   R                                     
Sbjct: 204 TRPLSIGMAGITFIACGAFSGLRSTAEGMTHAERLGFGREPQRREQEAIAERVTDAQLEQ 263

Query: 309 -----PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363
                    +PE+ GRF   V    L+ +  + IL   ++N++  Y++  + EG+ L   
Sbjct: 264 TTAFARYGFIPELIGRFNRIVSFAPLDAATLKDIL---QANVLRLYEQEFELEGLQLVVE 320

Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403
               + +   A+   +     GAR L+  +  VLE  ++ 
Sbjct: 321 PSVREWVVAGALKRET-----GARGLRAALAPVLEQAAYE 355


>gi|255023750|ref|ZP_05295736.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J1-208]
          Length = 105

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392
               ILT+ ++ L+ QYK +++ + + L+F   ++  +A  A+   +     GAR L+++
Sbjct: 1   ALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKT-----GARGLRSI 55

Query: 393 MERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431
           +E+++ ++ F      +    +I  +  R          D
Sbjct: 56  IEQIMLEVMFEIPSRDDITKCIITEKAARGEEEPQLQLED 95


>gi|167042795|gb|ABZ07513.1| hypothetical protein ALOHA_HF4000ANIW137I15ctg1g1 [uncultured
           marine microorganism HF4000_ANIW137I15]
          Length = 82

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             E+   N+LL+GPTG GKT +++ +AR+   PF  V+ T   E GYVG +VE II  L+
Sbjct: 5   DVEIQKSNVLLIGPTGSGKTLLAQTMARILDVPFAIVDATTLNEAGYVGEDVENIILKLL 64

Query: 108 DVAINIVRESRR 119
             A   V+ + R
Sbjct: 65  QNADYDVQRAER 76


>gi|323650020|gb|ADX97096.1| mitochondrial ATP-dependent clp protease ATP-binding subunit
           clpx-like [Perca flavescens]
          Length = 194

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L   NI+L+GPTG GKT +++ LAR    PF   + T  T+ GYVG ++E +I  L+  A
Sbjct: 41  LEKSNIILLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 100

Query: 111 INIVRESRRDEV 122
              V ++++  V
Sbjct: 101 NYSVEKAQQGIV 112



 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEG 281
           D+++V    +Q           GIVFLDE DKI +         V  EGVQ+ LL L+EG
Sbjct: 88  DIESVIAKLLQDANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEG 147

Query: 282 SSVSTKYG----------SINTDHILFIASGAFH 305
           + V+               ++T +ILF+ASGAF+
Sbjct: 148 TVVNVPEKNSRKLRGETLQVDTTNILFVASGAFN 181


>gi|198412228|ref|XP_002121704.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding
           subunit clpX, partial [Ciona intestinalis]
          Length = 140

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 45  ADLRDELMP-----KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
            +L DE  P      NI+++GPTG GKT +++ LAR    PF   + T  T+ GYVG ++
Sbjct: 31  KNLEDETSPITLEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDI 90

Query: 100 EQIIRDLVDVAINIVRESRRDEV 122
           E +I  L+  A   V  + +  V
Sbjct: 91  ESVIAKLLQDAGGHVERAEQGIV 113


>gi|124006085|ref|ZP_01690921.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
 gi|123988262|gb|EAY27915.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla
           marina ATCC 23134]
          Length = 370

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 8   SPREIVSELDRY-IIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPK-NILLVGPT 62
           +P++I +++  +  IGQ  A +A+++      RR +        +DEL PK N LLVGPT
Sbjct: 19  TPQDIYNKVRLHGYIGQHKAVQAISLMACRHIRRLKNVFVDKIPKDELPPKDNYLLVGPT 78

Query: 63  GVGKTAI-SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           G GKT +      ++   P   +++T ++E GY+G++V  I+  LV+ A      +    
Sbjct: 79  GSGKTYLVDIVFNKILHLPTTVIDITSYSETGYIGQDVVSILTRLVNAADGNYDLAALGV 138

Query: 122 V 122
           V
Sbjct: 139 V 139



 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 65/224 (29%)

Query: 245 GIVFLDEFDKIVARDS-------GNGIGVSREGVQRDLLPLVEGSSVSTKYG-------- 289
           G+V LDEFDK+    +       G    VS  GVQ++LL ++EG+ V             
Sbjct: 137 GVVCLDEFDKLSTSKNSAVFAGQGTTKDVSGFGVQKELLKILEGAEVDVPEELSHSAYAP 196

Query: 290 --SINTDHILFIASGAFHVS---------------------------------------- 307
             +++T+ I F+A GAF                                           
Sbjct: 197 RDTMSTEFISFVALGAFSGITKTINHHNQQIGFGSKTETAYTDAIAYQLNENDLNKTVYF 256

Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367
           +   ++PE+ GRF   V    L+K+  + IL   ++ L  +Y++ +      L   +D +
Sbjct: 257 QEYGIMPELIGRFSRIVPFHPLDKAHLQDIL--VKNTL-KRYEKELALVKSSLKIDDDVL 313

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
           + + D A+ + +     GAR L+T +   +ED  F      E+ 
Sbjct: 314 EKIVDQAIEMET-----GARGLRTSLFGYIEDACFELYSHLEQQ 352


>gi|169841963|ref|ZP_02875068.1| ATP-dependent protease ATP-binding subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 86

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           EL   N+LLVGPTG GKT +++ LA+    P    + T  TE GYVG +VE ++  L+  
Sbjct: 2   ELQKSNVLLVGPTGSGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKA 61

Query: 110 AINIVRESRR 119
           A   +     
Sbjct: 62  ADYDIERQNM 71


>gi|167465317|ref|ZP_02330406.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 70

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 45/70 (64%)

Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
           + +A +AV +N +  +IGARR   ++E++LED+SF A +L  +T++I  EYVR  + +  
Sbjct: 1   EEIARIAVEVNQSTENIGARRSHRILEKLLEDLSFEAPELTLETMLITPEYVREKLSNIV 60

Query: 428 SETDMYHFIL 437
              D+  +IL
Sbjct: 61  ENRDLSQYIL 70


>gi|6478309|gb|AAF13813.1|AF130815_5 heat shock protein HslU [Buchnera aphidicola]
          Length = 72

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425
           I  +A++A   N ++ +IGARRL TV+E ++EDISF+AS+ + + VV ID EYV  H+ D
Sbjct: 1   IRYIAEIAWKANESIENIGARRLYTVLEHLMEDISFNASNNKTEIVVNIDKEYVSKHLDD 60

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 61  LILNNDLSRFIL 72


>gi|262198639|ref|YP_003269848.1| ATPase AAA [Haliangium ochraceum DSM 14365]
 gi|262081986|gb|ACY17955.1| ATPase AAA-2 domain protein [Haliangium ochraceum DSM 14365]
          Length = 384

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 8   SPREIVSELDRYII-GQQDAKRAVAIALRNR---WRRQQLPADLRDELMPK-NILLVGPT 62
           SPRE+   L+     GQ  A+RA+ +         +R  L    R  L  K N L+VGPT
Sbjct: 26  SPREMFQRLESLGYRGQPTARRALCLMAYRHVRRIKRIYLDGGDRGLLPRKANYLMVGPT 85

Query: 63  GVGKTAISRRLA-RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           G GKT +  +L  ++   P + V++T ++E GYVG++   I+  L+  A +    +    
Sbjct: 86  GCGKTFLVEQLFDKILKLPTVLVDITTYSETGYVGQDPSSILTRLLHAADDNPLMASIGI 145

Query: 122 V---REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
           V         + +   + A  G T       V R+ L+  E S+  + +E+  +S  
Sbjct: 146 VCLDEFDKIASGQNNAVFAGAGTTKDVTGMGVQRELLKMLESSEVVVPLELTHSSYG 202



 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 68/226 (30%)

Query: 245 GIVFLDEFDKIVARDS-------GNGIGVSREGVQRDLLPLVEGSSVSTK---------- 287
           GIV LDEFDKI +  +       G    V+  GVQR+LL ++E S V             
Sbjct: 144 GIVCLDEFDKIASGQNNAVFAGAGTTKDVTGMGVQRELLKMLESSEVVVPLELTHSSYGD 203

Query: 288 YGSINTDHILFIASGAFH---------------------VSRPA---------------- 310
           +  ++T  I F+A+GAF                      V R +                
Sbjct: 204 HVVMSTADIAFVAAGAFSGFQQVAAQRASQDSIGFGRVSVGRGSPDAIAVGLSNEQVESI 263

Query: 311 ------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
                   LPE+  RF   V  + L+      IL    S++I +     + EG  L+  +
Sbjct: 264 SNFQAYGFLPELIARFTRIVPFQPLDTGTLTDIL---RSDVIERMTREFEDEGFALEVAD 320

Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           + +  +   A+   +     GAR L + + R LE+ +F A      
Sbjct: 321 EVLAHVVHEALARET-----GARGLASTLTRHLEETAFEAFGRSGG 361


>gi|149003197|ref|ZP_01828093.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758657|gb|EDK65654.1| ATP-dependent protease ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 135

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319
            G       E V++ L   V G   + K    N+ ++  I +      +   ++PE+ GR
Sbjct: 1   MGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIA---EDIQKFGIIPELIGR 57

Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
            PV   L+ L   D   IL +  + L+ QY+ L+  + + L+F ++++  +A+ +    +
Sbjct: 58  LPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKS----N 113

Query: 380 TVGDIGA 386
              D GA
Sbjct: 114 RTEDRGA 120


>gi|119222371|gb|ABL62383.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222373|gb|ABL62384.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222375|gb|ABL62385.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222377|gb|ABL62386.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222379|gb|ABL62387.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222381|gb|ABL62388.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 190

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119
           TG GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R  
Sbjct: 1   TGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGI 60

Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DE+ + A  +    I   + G+       ++    + +          +      D 
Sbjct: 61  VYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDT 120

Query: 177 SNFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +N     G + G L+      +  + +G G   + +   +     L   E + L+
Sbjct: 121 TNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPEDLL 174



 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 54/192 (28%)

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
              G   L++  ++++           + +    +  D  + ++++       I+  +  
Sbjct: 1   TGSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADHDIERAQ-R 58

Query: 245 GIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSI 291
           GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  +
Sbjct: 59  GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 118

Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312
           +T +ILFI  GAF                                      P DL     
Sbjct: 119 DTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPEDLLKFGM 178

Query: 313 LPEIQGRFPVRV 324
           +PE  GR P+  
Sbjct: 179 IPEFIGRLPIIT 190


>gi|42782921|ref|NP_980168.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
          cereus ATCC 10987]
 gi|42738848|gb|AAS42776.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus
          cereus ATCC 10987]
          Length = 76

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 51/58 (87%)

Query: 3  LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
          +  +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L  +LRDE+ PKNIL++G
Sbjct: 14 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIG 71


>gi|48727704|gb|AAT46131.1| ClpX [Bartonella henselae]
          Length = 90

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           QY+ L + E + L F ED++  +A  A+   +     GAR L+++ME++L +  F    L
Sbjct: 1   QYQRLFEMENVELAFHEDALRVIAKKAIERKT-----GARGLRSIMEKILLETMFELPAL 55

Query: 408 QE-KTVVIDAEYVRLH 422
           +  + VVI ++ V   
Sbjct: 56  EGVQKVVISSDVVDGK 71


>gi|299473631|emb|CBN78025.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 622

 Score = 90.0 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 143/451 (31%), Gaps = 117/451 (25%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P+EI  +L  ++IGQ + K                                      
Sbjct: 199 DLLPKEIYEKLSEHVIGQHNVK-------------------------------------- 220

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
                R LA      F ++ V   TE        +     +         E    +V  Q
Sbjct: 221 -----RALAVGMHNHFKRISVCPPTE--------QPGPHRVQHAPPPEALEQTLSDVDLQ 267

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
               A+    DA+               K       +    IEV     D +N  I G  
Sbjct: 268 LPGIADH---DAMAKPQQQQWVGS--GGKDVQKAKLNLSNGIEVEPVVLDKTNVMIVGPT 322

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE--N 243
             G   L++  +K++           + +        ES     +  ++ +S Q +E   
Sbjct: 323 GSGKTLLAKTLAKLVDVPLVIADATCLTQAGYVGEDVES----ILHKLYMESGQDIERCQ 378

Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTK-----------YGS 290
            GIV+LDE DKI  +     I   VS EGVQ+ LL ++EG+ V+             +  
Sbjct: 379 RGIVYLDEIDKISRKMENVSITRDVSGEGVQQALLKILEGAIVNVPKDGGRKNPRSDFIQ 438

Query: 291 INTDHILFIASGAF---------HVSR---------PADLL-PEIQGRFPVRVHLKSLNK 331
           ++T +ILFI  GAF          +++         PADL  PE+QG            +
Sbjct: 439 VDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPEMQG------------E 486

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
            +   ++ +  ++        +  E       +   +     A+       D G   L+ 
Sbjct: 487 EEPEKLVQEGSTS------SSLALEEGEFHMGKALSERGRARAIKR-----DTGGGGLRW 535

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
           + E +L +  F         V  + + V   
Sbjct: 536 IRESLLLEAMFDVRGSDGNAVYFEEDAVLEK 566


>gi|119222409|gb|ABL62402.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222411|gb|ABL62403.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222413|gb|ABL62404.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222415|gb|ABL62405.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222417|gb|ABL62406.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222419|gb|ABL62407.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 188

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 9/174 (5%)

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119
           G GKT +++ LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R   
Sbjct: 1   GSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIV 60

Query: 120 --DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ + A  +    I   + G+       ++    + +          +      D +
Sbjct: 61  YIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTT 120

Query: 178 NFDIPGGASVGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           N     G + G L+      +  + +G G   + +   +     L   E + L+
Sbjct: 121 NILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPEDLL 173



 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 54/190 (28%)

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
             G   L++  ++++           + +    +  D  + ++++       I+  +  G
Sbjct: 1   GSGKTLLAQTLARILNVPFTIADATCLTEAG-YVGEDVENIIVNLLQAADHDIERAQ-RG 58

Query: 246 IVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------KYGSIN 292
           IV++DE DKI  +     I   VS EGVQ+ LL L+EG+  +            ++  ++
Sbjct: 59  IVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVD 118

Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313
           T +ILFI  GAF                                      P DL     +
Sbjct: 119 TTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPEDLLKFGMI 178

Query: 314 PEIQGRFPVR 323
           PE  GR P+ 
Sbjct: 179 PEFIGRLPII 188


>gi|46205798|ref|ZP_00210035.1| COG1219: ATP-dependent protease Clp, ATPase subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 156

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 36/113 (31%)

Query: 285 STKYGSINTDHILFIASGAFH-------------------------------VSRPADL- 312
             ++  ++T ++LFI +GAF                                  RP DL 
Sbjct: 11  HQEFIQVDTSNVLFIVAGAFAGLDDIVAARARKRGVGFGAPIETGAGEDLFAQVRPEDLH 70

Query: 313 ----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361
               +PE  GR PV   + +L++     ILT   + L+ QY+ +   +G+ L+
Sbjct: 71  RFGLIPEFIGRLPVIASVAALDREALVRILTQPRNALVKQYQRMFAIDGVELE 123


>gi|8134494|sp|O69227|HSLU_BUCSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName:
           Full=Unfoldase HslU
          Length = 72

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425
           +  +A+ A  +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV  H+ +
Sbjct: 1   MRHIAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDE 60

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 61  LILNNDLNRFIL 72


>gi|3413695|gb|AAC31219.1| heat shock protein [Buchnera aphidicola]
          Length = 72

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425
           I  +A+ A  +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV  H+ +
Sbjct: 1   IRHIAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDE 60

Query: 426 FPSETDMYHFIL 437
                D+  FIL
Sbjct: 61  LILNNDLNRFIL 72


>gi|261755784|ref|ZP_05999493.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3
           str. 686]
 gi|261745537|gb|EEY33463.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3
           str. 686]
          Length = 57

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           + +IGARRLQTVME+VL++ISF+A D    T +IDA YV+  IG     TD+  FIL
Sbjct: 1   MENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIGGLAKNTDLSRFIL 57


>gi|238601601|ref|XP_002395453.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553]
 gi|215466220|gb|EEB96383.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553]
          Length = 74

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           GPTG GKT + + LA++   PF   + T FT+ GYVG +VE  I+ L+  A 
Sbjct: 1   GPTGSGKTLLVKTLAKVLDVPFSVSDATSFTQAGYVGEDVEMAIQRLLQAAP 52


>gi|167468556|ref|ZP_02333260.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis
           FV-1]
          Length = 54

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +GARRL TV+ER++EDIS+ AS+   +++ IDAEYV  H+ +  ++ D+  FIL
Sbjct: 1   MGARRLHTVLERLMEDISYDASESSGQSITIDAEYVGKHLDELVADEDLSRFIL 54


>gi|255569808|ref|XP_002525868.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223534873|gb|EEF36562.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 410

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407
           Q K++  T  + L FT++++  +A  A+  N+     GAR L+ ++ER+  +  +   + 
Sbjct: 283 QXKKMFSTNDVKLHFTDEALRLIAKKAMAKNT-----GARSLRAILERIPTEAMYEIPES 337

Query: 408 QEKT-----VVIDAEYV 419
           ++ +     V++D E V
Sbjct: 338 KKGSNCISAVLVDEEAV 354



 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRN----------RWRRQQLPADLRDELMPKNIL 57
           +P+EI    D ++IGQ  AK+ +   +                 Q   +   EL   N+L
Sbjct: 205 TPKEICKGFDEFVIGQDRAKKVLWQFITTTRGYIMIWSGH--DSQNDDNEIVELDKSNVL 262

Query: 58  LVGPTGVG 65
           L+GPTG G
Sbjct: 263 LMGPTGSG 270


>gi|261883951|ref|ZP_06007990.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 97

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE- 409
           ++++ +G+ L F ++++  +A  A+   +     GAR L++++E ++ D+ +      + 
Sbjct: 8   KMLELDGVSLSFEDEALREIAKKAIERKT-----GARGLRSIIEFIMLDVMYELPSRDDI 62

Query: 410 KTVVIDAEYVRL 421
              +I  E V  
Sbjct: 63  AECIITKEAVTE 74


>gi|47195116|emb|CAF89391.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 274

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 108/312 (34%), Gaps = 62/312 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNR----WRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +I + LD+Y++GQ  AK+ +A+A+ N     +      +  + E+  +      PT   +
Sbjct: 1   QIYAYLDKYVVGQSYAKKVLAVAVYNHYKRIYNNIPAGSQQQVEVEKQ------PTLTPR 54

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD-EVREQ 125
               RR  R     F     TK  +I  +  +   +   +         + RR  EV + 
Sbjct: 55  ELEMRR--REDEYRF-----TKLLQIAGISPHGNALGASMQQQTSQHTPQERRGGEVLDS 107

Query: 126 ASINA--EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
           A  +   ++  +  L    +    R                     +     +S    P 
Sbjct: 108 AHADIKLDKSNIILLGPTGSGDGGRRPSA-----------------SACPGGLSLTTPPH 150

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE- 242
             +V         ++ +       +  ++  C             D+++V    +Q    
Sbjct: 151 PLTVAGKTCWRRLARCLD------VPFAICDCTTLTQAGYVGE--DIESVIAKLLQDANY 202

Query: 243 -----NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------- 289
                  GIVFLDE DKI +         V  EGVQ+ LL L+EG+ V+           
Sbjct: 203 SVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPEKNSRKLRG 262

Query: 290 ---SINTDHILF 298
               ++T +ILF
Sbjct: 263 ETVQVDTTNILF 274


>gi|227547149|ref|ZP_03977198.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212366|gb|EEI80262.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 67

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271
           ++     L+ +E+ +L++ + + +D+I  VE +GIVF+DE DKI  R   +G  VSREGV
Sbjct: 1   IKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGV 60

Query: 272 QRDLLPL 278
           QRDLLPL
Sbjct: 61  QRDLLPL 67


>gi|158522983|ref|YP_001530853.1| ATPase [Desulfococcus oleovorans Hxd3]
 gi|158511809|gb|ABW68776.1| ATPase AAA-2 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 365

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 64/232 (27%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY--- 288
            V  ++++       V LDE DKI A+ SG    V+   +Q+ LL ++EG ++S +    
Sbjct: 108 DVTAEALKAHIENATVCLDEIDKISAQISGR-TNVTGISIQQALLTILEGETLSIETSVV 166

Query: 289 ---------GSINTDHILFIASGAFHV----------------------------SRPA- 310
                      I+T  +LFI  GAF                               RP  
Sbjct: 167 REGKTRRVRVPIDTGRMLFICGGAFEDLYSQVYALTEEGKDGRKLKETYIWDEARERPER 226

Query: 311 ------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                              ++P+   RF     L++L +   + IL +   +     K+ 
Sbjct: 227 KIIFSLKDYMRLDDLFEYGMVPQFISRFSAISVLENLERDVLKHILLNAADSPYTGAKQY 286

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
            +T GI L+ ++D+++ +A  A   N+    IGAR L+ V  R+  D+ F  
Sbjct: 287 FETLGIDLEISDDALELIAIHA-EANTR---IGARALREVFNRITADLQFDP 334


>gi|320333578|ref|YP_004170289.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319754867|gb|ADV66624.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 624

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 13  VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS   R + G ++AK+ +      L+N  +  Q+ A++     PK +LLVGP G GKT +
Sbjct: 163 VSTTFRDVAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLL 217

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R +A  A APF  V  ++F E+ +VG     V  +  D    A  I+     D +  + 
Sbjct: 218 ARAVAGEADAPFFSVSASEFMEM-FVGVGASRVRTLFDDARKSAPAIIFIDEIDSIGRKR 276

Query: 127 ----------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
                           +IL  + G   TS        N  ++    L      D+++ I+
Sbjct: 277 GAGIGGGHDEREQTLNQILSEMDGFDKTSSVIVLAATNRPDILDPALLRPGRFDRQVTID 336

Query: 169 VAD 171
           + +
Sbjct: 337 LPN 339


>gi|15807950|ref|NP_285613.1| cell division protein FtsH [Deinococcus radiodurans R1]
 gi|6460771|gb|AAF12476.1|AE001863_101 cell division protein FtsH [Deinococcus radiodurans R1]
          Length = 655

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 30/177 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AKR +      L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A 
Sbjct: 201 DVAGHEEAKRELIEVVDFLKNPAKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAG 255

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            A  PF  V  ++F E+ +VG     V  +  D    A  I+     D + R++      
Sbjct: 256 EADVPFFSVSASEFMEM-FVGVGASRVRTLFEDARKSAPAIIFIDEIDSIGRKRGAGIGG 314

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                     +IL  + G   +S        N  +V    L      D+++ I++ +
Sbjct: 315 GHDEREQTLNQILSEMDGFDKSSSVIVLGATNRPDVLDPALLRPGRFDRQVTIDLPN 371


>gi|254993488|ref|ZP_05275678.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria
           monocytogenes FSL J2-064]
          Length = 93

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           L+ QYK +++ + + L+F   ++  +A  A+   +     GAR L++++E+++ ++ F  
Sbjct: 1   LVKQYKRMLELDDVELEFEPTALIEIAKEAIERKT-----GARGLRSIIEQIMLEVMFEI 55

Query: 405 SDLQE-KTVVIDAEYVRLHIGDFPSETD 431
               +    +I  +  R          D
Sbjct: 56  PSRDDITKCIITEKAARGEEEPQLQLED 83


>gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 625

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +     R + GQ++AK   + +   L N  +   + A L     PK
Sbjct: 158 MTFGKSNPKIYAESETGKTFRDVAGQEEAKEALKEIVDFLHNPQKYADIGASL-----PK 212

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 213 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQA 266


>gi|94986281|ref|YP_605645.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556562|gb|ABF46476.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 621

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 30/177 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AKR +      L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A 
Sbjct: 167 DVAGHEEAKRELIEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            A  PF  V  ++F E+ +VG     V  +  D    A  I+     D +  +       
Sbjct: 222 EADVPFFSVSASEFMEM-FVGVGASRVRTLFEDARKSAPAIIFIDEIDSIGRKRGAGIGG 280

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                     +IL  + G   TS        N  +V    L      D+++ I++ +
Sbjct: 281 GHDEREQTLNQILSEMDGFDKTSSVIVLAATNRPDVLDPALLRPGRFDRQVTIDLPN 337


>gi|226354926|ref|YP_002784666.1| cell division protease FtsH [Deinococcus deserti VCD115]
 gi|226316916|gb|ACO44912.1| putative cell division protease ftsH; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 622

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 30/177 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AKR +      L+N  +  QL A++     PK +LLVGP G GKT ++R +A 
Sbjct: 170 DVAGHEEAKRELIEVVDFLKNPAKYHQLGAEI-----PKGVLLVGPPGTGKTLLARAIAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            A  PF  V  ++F E+ +VG     V  +  D    A  I+     D +  +       
Sbjct: 225 EADVPFFSVSASEFMEM-FVGVGASRVRTLFEDARKSAPAIMFIDEIDSIGRKRGAGIGG 283

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                     +IL  + G   +S        N  +V    L      D+++ I++ +
Sbjct: 284 GHDEREQTLNQILSEMDGFDKSSSVIVLGATNRPDVLDPALLRPGRFDRQVTIDLPN 340


>gi|308799503|ref|XP_003074532.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
 gi|116000703|emb|CAL50383.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
          Length = 1004

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386
           ++L + +   ILT     +  Q++ LM   G+ L +T+D++  +A  AV   +     GA
Sbjct: 283 QALGEKELVDILTKPRDAIGKQFQRLMDMHGVELQYTDDALAHIASAAVKRGT-----GA 337

Query: 387 RRLQTVMERVL 397
           R L+T++E  L
Sbjct: 338 RGLRTLLEHSL 348


>gi|325283722|ref|YP_004256263.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324315531|gb|ADY26646.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 634

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 30/185 (16%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK+ +      L+N  +  Q+ A++     PK +LLVGP G GKT ++R +A 
Sbjct: 169 DVAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAIAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            A  PF  V  ++F E+ +VG     V  +  D    A  I+     D +  +       
Sbjct: 224 EADVPFFSVSASEFMEM-FVGVGASRVRTLFEDARKNAPAIMFIDEIDSIGRKRGAGIGG 282

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     +IL  + G    S        N  +V    L      D+++ I++ +   
Sbjct: 283 GHDEREQTLNQILSEMDGFDKASNVIVLAATNRPDVLDPALLRPGRFDRQVTIDLPNMKE 342

Query: 175 DISNF 179
            ++  
Sbjct: 343 RVAIL 347


>gi|307111816|gb|EFN60050.1| hypothetical protein CHLNCDRAFT_15257 [Chlorella variabilis]
          Length = 74

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
           L++L++ +   +L    + L  QY  +    G     T   + A+A  A         +G
Sbjct: 1   LQALDEQELAHVLCRPRNALSKQYSGIFGKNGCRFHATPAGVAAIAREA-----RTKGVG 55

Query: 386 ARRLQTVMERVLEDISFSA 404
           AR L++++ER L +  F  
Sbjct: 56  ARGLRSILERALLEAMFHV 74


>gi|266622121|ref|ZP_06115056.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288866171|gb|EFC98469.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 622

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ++AK   + +   L N  +   + A L     PK
Sbjct: 158 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPQKYADIGASL-----PK 212

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG      +RDL   A 
Sbjct: 213 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQAN 267


>gi|226528296|ref|NP_001140283.1| hypothetical protein LOC100272327 [Zea mays]
 gi|194698842|gb|ACF83505.1| unknown [Zea mays]
          Length = 116

 Score = 77.7 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
              + L FT+ ++  +A  A++ N+     GAR L+T++E +L D  +   D +     I
Sbjct: 1   MNNVKLHFTDGALRIIAKKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEKRI 55

Query: 415 DAEYVRL 421
           DA  V  
Sbjct: 56  DAVVVDE 62


>gi|310828188|ref|YP_003960545.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
 gi|308739922|gb|ADO37582.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612]
          Length = 611

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I  E       + + GQ +AK A+      L N  +   + A+L     PK
Sbjct: 152 MTFGKSNAKIYVEAETGKTFKDVAGQDEAKEALTEIVDFLHNPKKYADIGANL-----PK 206

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 207 GALLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQA 260


>gi|323486012|ref|ZP_08091343.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
 gi|323400579|gb|EGA92946.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum
           WAL-14163]
          Length = 625

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ +AK A+      L N  +  ++ A     ++PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 259


>gi|323692944|ref|ZP_08107165.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
 gi|323502945|gb|EGB18786.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum
           WAL-14673]
          Length = 625

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ +AK A+      L N  +  ++ A     ++PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 259


>gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
 gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
          Length = 662

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 122/319 (38%), Gaps = 40/319 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E       + + GQ++AK +++  +    N  + +++ A      +PK
Sbjct: 153 MNFGKSNAKIYVENKTGKTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAK-----VPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+++ +E+ D         +         ++  E  +K         +   +
Sbjct: 327 ALTRPGRFDRQVQVELPDLKGREDILKVHAKNIKREDDIDYEEIAKRTAGTSGADLANII 386

Query: 213 QKCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R+  ++L   D++      I   +    V  D+  KI+A        V+   
Sbjct: 387 NEGALRAVREGRNKLTQEDLEESIETVIAGQQKKNAVISDDQKKIIAYHEVGHALVA--A 444

Query: 271 VQRDLLPLVEGSSVSTKYG 289
           +Q    P+ + + V    G
Sbjct: 445 IQTQKTPVTKITIVPRTGG 463


>gi|255655844|ref|ZP_05401253.1| cell division protein [Clostridium difficile QCD-23m63]
 gi|296450877|ref|ZP_06892626.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296879122|ref|ZP_06903117.1| cell division protein FtsH [Clostridium difficile NAP07]
 gi|296260249|gb|EFH07095.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296429665|gb|EFH15517.1| cell division protein FtsH [Clostridium difficile NAP07]
          Length = 605

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK A++  +    N  + +++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 164 NDVAGQDEAKEALSEIVDFLHNPEKYKKIGAQM-----PKGALLVGPPGTGKTLLAKAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  ++F E+ +VG    +I    +   + A  IV     D + ++      
Sbjct: 219 GEANVPFFSISGSEFVEM-FVGMGASRIRDLFKQAKEKAPCIVFIDEIDTIGKK------ 271

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
               D   G        +   + L + +  D  I + +   ++   + D
Sbjct: 272 ---RDNGSGLGGNDEREQTLNQLLSEMDGFDGGIGVVILAATNRPDSLD 317


>gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK  ++     LRN  +   + A L     P+ ILLVGP G GKT ++R +A 
Sbjct: 204 DVAGEEEAKAELSEVVDFLRNPMKYHAIGARL-----PRGILLVGPPGTGKTLLARAVAG 258

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL + A
Sbjct: 259 EAGVPFFSVSASEFVEM-FVGVGASRV-RDLFERA 291


>gi|146278243|ref|YP_001168402.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556484|gb|ABP71097.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 783

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 471 RDLEKTLKRVVFGQDKAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 525

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 526 AKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 580


>gi|221638713|ref|YP_002524975.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides KD131]
 gi|221159494|gb|ACM00474.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides KD131]
          Length = 771

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 568


>gi|332557735|ref|ZP_08412057.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides WS8N]
 gi|332275447|gb|EGJ20762.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides WS8N]
          Length = 771

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 568


>gi|77462844|ref|YP_352348.1| chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1]
 gi|126461737|ref|YP_001042851.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77387262|gb|ABA78447.1| Chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1]
 gi|126103401|gb|ABN76079.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 771

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 568


>gi|297624945|ref|YP_003706379.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297166125|gb|ADI15836.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 665

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V      + G ++AK   + V   L+N  +  ++ A++     PK +LLVGP G GKT +
Sbjct: 158 VKTTFEDVAGHEEAKQELKEVVDFLKNPQKYLRIGAEI-----PKGMLLVGPPGTGKTLL 212

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF+ V  ++F E+ +VG    ++ R+L + A
Sbjct: 213 ARAVAGEAGVPFLTVSASEFMEM-FVGVGASRV-RNLFEEA 251


>gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
 gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
          Length = 680

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 121/319 (37%), Gaps = 40/319 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E       + + GQ++AK ++A  +    N  + +++ A      +PK
Sbjct: 153 MNFGKSNAKIYMENETGKTFKDVAGQEEAKESLAEIVDFLHNPGKYKEIGA-----RVPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            ILLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GILLVGPPGTGKTLLAKAVAGEAKVPFFTISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  A          N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDAAEGVVLLAATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+++ +E+ D         +         N+  E  +K         +   V
Sbjct: 327 ALTRPGRFDRQVQVELPDLKGREDILKVHAKKIKKEENIDYEEIAKRTAGTSGADLANIV 386

Query: 213 QKCYPELMRDESDRL--IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R+   +L   D++      I  ++    V  D+  KI+A        V+   
Sbjct: 387 NEGALRAVREGRKKLSQEDLEESIETVIAGMQKKNAVISDDQKKIIAYHEVGHALVA--A 444

Query: 271 VQRDLLPLVEGSSVSTKYG 289
           +Q    P+ + + V    G
Sbjct: 445 IQTHKTPVTKITIVPRTGG 463


>gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
 gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
          Length = 619

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK A++  +    N  + ++L A +     PK  LLVGP G GKT +++ +A
Sbjct: 166 QDVAGQDEAKEALSEIVDFLHNPDKYKKLGAKM-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 221 GEANVPFFSISGSEFVEM-FVGMGAARV-RDLFKQA 254


>gi|154497127|ref|ZP_02035823.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC
           29799]
 gi|150273526|gb|EDN00654.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC
           29799]
          Length = 764

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 261 KDVAGQDEAKESLVEIIDFLHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 315

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ YVG    ++ RDL   A  +
Sbjct: 316 GEANVPFFSISGSDFVEM-YVGVGASRV-RDLFKEASKM 352


>gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
 gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23]
          Length = 615

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+   + + G ++AKR +      L+N  +  +L A++     PK +LLVGP G GKT +
Sbjct: 160 VNTTFKDVAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLL 214

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +R +A  AG PF  V  ++F E+ +VG     V  +  D    A +I+     D +  +
Sbjct: 215 ARAVAGEAGVPFFSVSASEFMEM-FVGVGASRVRSLFEDARKNAPSIIFIDELDSIGRK 272


>gi|163814186|ref|ZP_02205578.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759]
 gi|158450635|gb|EDP27630.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759]
          Length = 456

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 18/126 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP +I   LDR + GQ++AKRA A+ L N                 +N+L  GPTG GKT
Sbjct: 158 SPAKIYEYLDRRVYGQKEAKRAAAMLLWNH-----------VNGRRQNVLFAGPTGCGKT 206

Query: 68  AISRRLARLAGAPFIKVE-VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
            I R+LA+L   P I +   T  T  G+ G      +R+L D             V ++A
Sbjct: 207 EIFRQLAKL--YPNIVIHNATSLTGTGWKGN---TKVRNLFDGVPQDKMGHLII-VLDEA 260

Query: 127 SINAEE 132
               E+
Sbjct: 261 DKMFED 266



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374
           EI GR    V L+ + + DF  IL D   + +    +L    G+ L  +E +   LA  A
Sbjct: 366 EIAGRIGNIVQLREMTEDDFYAILNDKRISPVR---KLSDYYGVKLKMSETAKHKLAKEA 422

Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
                    +G R + + ++R L+   F   D +E  +
Sbjct: 423 AE-----NGMGVRFIHSQIQRRLDYELFENCDRKEYVI 455


>gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 651

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 124/325 (38%), Gaps = 52/325 (16%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E       + + GQ++AK +++  +    N  + +++ A      +PK
Sbjct: 153 MNFGKSNAKIYVENKTGKTFKDVAGQEEAKDSLSEIVDFLHNPGKYKEIGAK-----VPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKV-------MGSGR 204
            L      D+++ +E+ D         +          ++  E+  +        + +  
Sbjct: 327 ALTRPGRFDRQVQVELPDLKGREDILKVHAKNIKREDDIDYEEIAKRTAGTSGADLANII 386

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
            +    +V++   +L ++      D++      I   +    V  D+  KI+A       
Sbjct: 387 NEGALRAVREGRRKLTQE------DLEESIETVIAGQQKKNAVISDDQKKIIAYHEVGHA 440

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYG 289
            V+   +Q    P+ + + +    G
Sbjct: 441 LVA--AIQTQKTPVTKITIIPRTGG 463


>gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47FAA]
          Length = 625

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 112/310 (36%), Gaps = 38/310 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E         + G+++AK   + +   L N  +   + A+L     PK
Sbjct: 159 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 213

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG     V  + +   D A 
Sbjct: 214 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAKVRDLFKQANDKAP 272

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKT--------ATSNTREVFRK 153
            IV     D + ++                 ++L  + G          A +N  E   K
Sbjct: 273 CIVFIDEIDTIGKKRDGGGMSGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDK 332

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+ + +E+ D     +   + G       ++     ++        ++   +
Sbjct: 333 ALLRPGRFDRRVPVELPDLKGREAILRVHGQNVKMSDDVDYSAIARATAGASGAELANII 392

Query: 213 QKCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R     ++  D++      I   +    V   E  KIVA        V+   
Sbjct: 393 NEAALRAVRMGRGAVVQGDLEESVETVIAGYQKKNAVISQEERKIVAYHEVGHALVAACQ 452

Query: 271 VQRDLLPLVE 280
            Q   +  + 
Sbjct: 453 TQSAPVQKIT 462


>gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 618

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           VS   + + G ++AKR + + + +  +  Q    +  E+ PK +LLVGP G GKT ++R 
Sbjct: 162 VSTTFKDVAGHEEAKREL-VEVVDFLKHPQKYLAIGAEI-PKGVLLVGPPGTGKTLLARA 219

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  V  ++F E+ +VG    ++ R L + A
Sbjct: 220 VAGEAGVPFFSVSASEFMEM-FVGVGASRV-RTLFEEA 255


>gi|195938494|ref|ZP_03083876.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
          Length = 104

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA 45
           +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R +   
Sbjct: 66  TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGD 103


>gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27]
          Length = 618

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+   + + G ++AKR +      L+N  +  ++ A++     PK +LLVGP G GKT +
Sbjct: 160 VNTTFKDVAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLL 214

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +R +A  AG PF  V  ++F E+ +VG     V  +  D    A +I+     D +  +
Sbjct: 215 ARAVAGEAGVPFFSVSASEFMEM-FVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRK 272


>gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 618

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+   + + G ++AKR +      L+N  +  ++ A++     PK +LLVGP G GKT +
Sbjct: 160 VNTTFKDVAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLL 214

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +R +A  AG PF  V  ++F E+ +VG     V  +  D    A +I+     D +  +
Sbjct: 215 ARAVAGEAGVPFFSVSASEFMEM-FVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRK 272


>gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 617

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+   + + G ++AKR +      L+N  +  +L A++     PK +LLVGP G GKT +
Sbjct: 160 VNTTFKDVAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLL 214

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +R +A  AG PF  V  ++F E+ +VG     V  +  D    A +I+     D +  +
Sbjct: 215 ARAVAGEAGVPFFSVSASEFMEM-FVGVGASRVRSLFEDARRNAPSIIFIDELDSIGRK 272


>gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 631

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 107/285 (37%), Gaps = 32/285 (11%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK A++  +    +  +  ++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 165 DDVAGQDEAKEALSEIVDFLHDPGKYTEIGAKM-----PKGALLVGPPGTGKTLLAQAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++      
Sbjct: 220 GEAGVPFFSISGSEFVEM-FVGMGASRVRDLFKQAKEKAPCIVFIDEIDAIGKKRDANFG 278

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G          A +N  +   K L      D+ + +E+ D + 
Sbjct: 279 GNDEREQTLNQLLSEMDGFEDGIGVVILAATNRPDSLDKALLRPGRFDRRVPVELPDLNG 338

Query: 175 DISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI--DMD 231
             +   +   G +V         ++        ++   V +     +R    +++  D++
Sbjct: 339 REAILKVHTKGVNVDQNIDYNQVARATSGASGAELANIVNEAALRAVRLGRKKVLQEDLE 398

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
                 I   +  G V  +   KI+A        V+  G     +
Sbjct: 399 ESVETVIAGYQRKGAVINEREKKIIAYHEVGHALVAAMGKHSAPV 443


>gi|148553054|ref|YP_001260636.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas
           wittichii RW1]
 gi|148498244|gb|ABQ66498.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas
           wittichii RW1]
          Length = 771

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++
Sbjct: 459 LETDLKRVVFGQDKAIEVLSSAIK------LSRAGLRDPDKPIGNYLFSGPTGVGKTEVA 512

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA + G P  + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 RQLASILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQHPHS 566


>gi|255306855|ref|ZP_05351026.1| cell division protein [Clostridium difficile ATCC 43255]
          Length = 583

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK A+      L N  + +++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 142 NDVAGQDEAKEALTEIVDFLHNPEKYKKIGAQM-----PKGALLVGPPGTGKTLLAKAVA 196

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  ++F E+ +VG    +I    +   + A  IV     D + ++      
Sbjct: 197 GEANVPFFSISGSEFVEM-FVGMGASRIRDLFKQAKEKAPCIVFIDEIDTIGKK------ 249

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
               D   G        +   + L + +  D  I + +   ++   + D
Sbjct: 250 ---RDNGSGLGGNDEREQTLNQLLSEMDGFDGGIGVVILAATNRPDSLD 295


>gi|297565113|ref|YP_003684085.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
 gi|296849562|gb|ADH62577.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
          Length = 620

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS   + + G  +AKR +      L+N  +   + A++     PK +LLVGP G GKT +
Sbjct: 159 VSTTFKDVAGHTEAKRELMEVVDFLKNPQKYIAIGAEI-----PKGVLLVGPPGTGKTLL 213

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           SR +A  AG PF  V  ++F E+ +VG    ++ R L + A
Sbjct: 214 SRAIAGEAGVPFFSVSASEFMEM-FVGVGASRV-RSLFEEA 252


>gi|126699436|ref|YP_001088333.1| cell division protein [Clostridium difficile 630]
 gi|254975463|ref|ZP_05271935.1| cell division protein [Clostridium difficile QCD-66c26]
 gi|255092850|ref|ZP_05322328.1| cell division protein [Clostridium difficile CIP 107932]
 gi|255101000|ref|ZP_05329977.1| cell division protein [Clostridium difficile QCD-63q42]
 gi|255314593|ref|ZP_05356176.1| cell division protein [Clostridium difficile QCD-76w55]
 gi|255517267|ref|ZP_05384943.1| cell division protein [Clostridium difficile QCD-97b34]
 gi|255650373|ref|ZP_05397275.1| cell division protein [Clostridium difficile QCD-37x79]
 gi|260683487|ref|YP_003214772.1| cell division protein [Clostridium difficile CD196]
 gi|260687083|ref|YP_003218216.1| cell division protein [Clostridium difficile R20291]
 gi|306520332|ref|ZP_07406679.1| cell division protein [Clostridium difficile QCD-32g58]
 gi|115250873|emb|CAJ68698.1| Cell division protease FtsH1 [Clostridium difficile]
 gi|260209650|emb|CBA63344.1| cell division protein [Clostridium difficile CD196]
 gi|260213099|emb|CBE04494.1| cell division protein [Clostridium difficile R20291]
          Length = 605

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK A+      L N  + +++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 164 NDVAGQDEAKEALTEIVDFLHNPEKYKKIGAQM-----PKGALLVGPPGTGKTLLAKAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  ++F E+ +VG    +I    +   + A  IV     D + ++      
Sbjct: 219 GEANVPFFSISGSEFVEM-FVGMGASRIRDLFKQAKEKAPCIVFIDEIDTIGKK------ 271

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
               D   G        +   + L + +  D  I + +   ++   + D
Sbjct: 272 ---RDNGSGLGGNDEREQTLNQLLSEMDGFDGGIGVVILAATNRPDSLD 317


>gi|254460098|ref|ZP_05073514.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2083]
 gi|206676687|gb|EDZ41174.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 775

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 462 KDLEASLKRVVFGQDDAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 AKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|291296855|ref|YP_003508253.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290471814|gb|ADD29233.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 622

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+   + + G  +AKR +      L+N  +   + A++     PK +LLVGP G GKT +
Sbjct: 161 VNTTFKDVAGHHEAKRELMEVVDFLKNPQKYIAIGAEI-----PKGVLLVGPPGTGKTLL 215

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF  V  ++F E+ +VG    ++ R L D A
Sbjct: 216 TRAVAGEAGVPFFSVSASEFMEM-FVGVGASRV-RTLFDEA 254


>gi|198274399|ref|ZP_03206931.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
 gi|198272765|gb|EDY97034.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135]
          Length = 619

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 102/272 (37%), Gaps = 32/272 (11%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI +     + GQ +AK   + +   L N  +   + A L     PK  LLVGP G GKT
Sbjct: 171 EIKTTF-ADVAGQNEAKEMLKEIVDFLHNPKKYTDIGASL-----PKGALLVGPPGTGKT 224

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVRE 124
            I+R +A  A  PF  +  ++F ++ +VG     V  + R   + A  I+     D + +
Sbjct: 225 LIARAVAGEAKVPFFAISGSEFVQM-FVGMGAAKVRDLFRQANEKAPCIIFIDEIDAIGK 283

Query: 125 QA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDI 167
           +                ++L  + G          A +N  E   K L      D+ I +
Sbjct: 284 RRDSGLGGNDEREQTLNQLLTEMDGFDGRKGVVILAATNRPENLDKALLRPGRFDRRIQM 343

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+ D     +  ++            ++ ++        ++   V +     +R   +++
Sbjct: 344 ELPDLEGRKAILNVHLKRVKHEEVDIDVVARATAGTSGAELANIVNEAALRAVRMGRNKI 403

Query: 228 --IDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
              D++      I   +  G V   E  +I+A
Sbjct: 404 NTADLEESVETVIAGAQKKGKVVSAEEKRIIA 435


>gi|56698001|ref|YP_168372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria
           pomeroyi DSS-3]
 gi|56679738|gb|AAV96404.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria
           pomeroyi DSS-3]
          Length = 775

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 462 KDLEASLKRVVFGQDKAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 AKQLAETLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|218133177|ref|ZP_03461981.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992050|gb|EEC58054.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC
           43243]
          Length = 616

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 42/234 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK A+      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQEEAKEALTEIVDFLHNPDKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++      
Sbjct: 221 GEADVPFFSIAGSEFVEM-FVGMGASKVRDLFKQANEKAPCIVFIDEIDTIGKK------ 273

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
               D            +   + L + +  D +  + +                 +   N
Sbjct: 274 ---RDGGSYGGGNDEREQTLNQLLTEMDGFDGKKGVVI-----------------LAATN 313

Query: 192 LSELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
             E   K +    +   R+ V+    K    ++R  +D++   ++V   +I   
Sbjct: 314 RPESLDKALLRPGRFDRRIPVELPDLKGREAILRVHADKVRVNESVDYSAIARA 367


>gi|260576490|ref|ZP_05844480.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sp. SW2]
 gi|259021373|gb|EEW24679.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter
           sp. SW2]
          Length = 772

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A+A A++              E    N L  GPTGVGKT +
Sbjct: 459 RDLEKSLKRVVFGQDKAIEALASAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 568


>gi|307105269|gb|EFN53519.1| hypothetical protein CHLNCDRAFT_136599 [Chlorella variabilis]
          Length = 609

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 19/138 (13%)

Query: 19  YIIGQQDAKRAVA--IA-LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AKR +A  +A L+N  +  ++ A +     P  +LL GP G GKT ++R +A 
Sbjct: 329 DVAGMDAAKRELAEVVACLKNSSKFARMGAQM-----PSGVLLSGPPGTGKTLLARAVAG 383

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEV-REQASINAE 131
            AG PF  V  ++F E+ +VGR   +I     +    A  +V     D V  ++     E
Sbjct: 384 EAGVPFFAVSASEFVEL-FVGRGAARIRELFGEARKKAPCVVFIDELDAVGGKRGIGLNE 442

Query: 132 ER------ILDALVGKTA 143
           ER      +L  L G  A
Sbjct: 443 ERDQTLNQLLTELDGFEA 460


>gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159]
          Length = 699

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK  +A     L+N  +  ++ A L     P+ +LLVGP G GKT ++R +A 
Sbjct: 252 DVAGEEEAKAELAQVVDFLKNPAKYHRIGARL-----PRGVLLVGPPGTGKTLLARAVAG 306

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL + A
Sbjct: 307 EAGVPFFSVSASEFVEM-FVGVGASRV-RDLFERA 339


>gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 620

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ++AK   + +   L N  +  ++ A L     PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 259


>gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1]
          Length = 620

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + GQ++AK   + +   L N  +  ++ A L     PK
Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 259


>gi|254510894|ref|ZP_05122961.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium KLH11]
 gi|221534605|gb|EEE37593.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacteraceae bacterium KLH11]
          Length = 767

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ +A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 454 KDLEASLKRVVFGQDEAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 563


>gi|260432833|ref|ZP_05786804.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416661|gb|EEX09920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 774

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A+A A++              E    N L  GPTGVGKT +
Sbjct: 461 KDLEASLKRVVFGQDQAIEALASAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 515

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 516 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 570


>gi|83854838|ref|ZP_00948368.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. NAS-14.1]
 gi|83941361|ref|ZP_00953823.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. EE-36]
 gi|83842681|gb|EAP81848.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. NAS-14.1]
 gi|83847181|gb|EAP85056.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter
           sp. EE-36]
          Length = 773

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLEASLKRVVFGQDKAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 569


>gi|61657495|emb|CAI44406.1| ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga sp.
           RQ2]
          Length = 106

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE 50
           +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R     D  D 
Sbjct: 64  TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDV 106


>gi|294678496|ref|YP_003579111.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
 gi|294477316|gb|ADE86704.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacter
           capsulatus SB 1003]
          Length = 773

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A   +A A++              E    N L  GPTGVGKT +
Sbjct: 460 RDLEKTLKRVVFGQDKAIETLASAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLANTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 677

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 40/319 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E         + GQ++AK ++      L    + +++ A     ++PK
Sbjct: 153 MNFGKSNAKIYMENKTGKTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+ + +E+ D         +         ++  E  +K         +   V
Sbjct: 327 ALTRPGRFDRRVQVELPDLKGREDILKVHAKKIKRENDIDYEEIAKRTAGTSGADLANIV 386

Query: 213 QKCYPELMRDESDRL--IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R+  +RL  ID++      I   +    V  D+  KI+A        V+   
Sbjct: 387 NEGALRAVREGRNRLTQIDLEESIETVIAGAQKKNAVISDDQKKIIAYHEVGHALVA--A 444

Query: 271 VQRDLLPLVEGSSVSTKYG 289
           +Q    P+ + + V    G
Sbjct: 445 IQTQKTPVTKITIVPRTGG 463


>gi|89897277|ref|YP_520764.1| hypothetical protein DSY4531 [Desulfitobacterium hafniense Y51]
 gi|89336725|dbj|BAE86320.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 614

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ ++K A+A     L N  +  ++ A+L     PK  LLVGP G GKT +++ +A
Sbjct: 174 DDVAGQDESKEALAEIIDFLHNPKKYSEIGANL-----PKGALLVGPPGTGKTLLAKAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PF  +  ++F E+ +VG    ++ RDL       A  IV     D + ++     
Sbjct: 229 GEAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFQQANEKAPCIVFIDEIDTIGKK----- 281

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                D+  G        +   + L + +  D +  + +                 +   
Sbjct: 282 ----RDSGRGFGGNDEREQTLNQLLTEMDGFDGKKGVVI-----------------LAAT 320

Query: 191 NLSELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
           N  E   K +    +   R+ V+    K    +++  + R+   D++  ++I   
Sbjct: 321 NRPESLDKALLRPGRFDRRIPVELPDLKGREAILKVHAQRVKMEDSIDFNAIARA 375


>gi|253701843|ref|YP_003023032.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251776693|gb|ACT19274.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 616

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 37/271 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   R V   L+   + QQ+        +PK +LLVGP G GKT ++R +A 
Sbjct: 176 DVAGMEEAKQELREVVDYLKEPKKFQQIGGK-----VPKGVLLVGPPGTGKTLLARAVAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL   A   +      +      ++A  R  
Sbjct: 231 EAGVPFFSISASAFIEM-FVGVGASRV-RDLFATARKSLPSIIFID-----ELDAVGRSR 283

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVGILN 191
            A  G        +   + L + +  D   ++ V   ++     D     PG     ++ 
Sbjct: 284 GAGFGGGHDER-EQTLNQLLSEMDGFDPHTELVVISATNRPDVLDPALLRPGRFDRTVVI 342

Query: 192 LSELFSKVMGSGRKKKIRMS---------VQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
               +       R    ++          + K  P +   + + L++   +    +   E
Sbjct: 343 ERPDWRDREKILRVHTKKVPLGADVDLAVIAKGTPGMTGADLEGLVNEAAI----LTARE 398

Query: 243 NYGIVFLDEF----DKIVARDSGNGIGVSRE 269
           N  IV LDE     DKI+     + +    E
Sbjct: 399 NKHIVGLDELERAKDKILMGGERHMVISDEE 429


>gi|328676753|gb|AEB27623.1| Cell division protein FtsH [Francisella cf. novicida Fx1]
          Length = 637

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|119222383|gb|ABL62389.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222385|gb|ABL62390.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222387|gb|ABL62391.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222389|gb|ABL62392.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222391|gb|ABL62393.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222393|gb|ABL62394.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222395|gb|ABL62395.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 179

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 53/155 (34%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 26  EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 84

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 85  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 144

Query: 305 -----------HVSRPADL-----LPEIQGRFPVR 323
                          P DL     +PE  GR P+ 
Sbjct: 145 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPII 179



 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQA 126
            LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+ + A
Sbjct: 1   TLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEIDKIA 60

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
             +    I   + G+       ++    + +          +      D +N     G +
Sbjct: 61  RKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGA 120

Query: 187 VGILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            G L+      +  + +G G   + +   +     L   E + L+
Sbjct: 121 FGGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPEDLL 164


>gi|254374098|ref|ZP_04989580.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
 gi|151571818|gb|EDN37472.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|119222453|gb|ABL62424.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222455|gb|ABL62425.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222457|gb|ABL62426.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222459|gb|ABL62427.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222461|gb|ABL62428.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222463|gb|ABL62429.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222465|gb|ABL62430.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222467|gb|ABL62431.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 178

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 53/155 (34%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 25  EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 83

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 84  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 143

Query: 305 -----------HVSRPADL-----LPEIQGRFPVR 323
                          P DL     +PE  GR P+ 
Sbjct: 144 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPII 178



 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQAS 127
           LAR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+ + A 
Sbjct: 1   LARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEIDKIAR 60

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
            +    I   + G+       ++    + +          +      D +N     G + 
Sbjct: 61  KSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAF 120

Query: 188 GILNL---SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           G L+      +  + +G G   + +   +     L   E + L+
Sbjct: 121 GGLDQVIERRMGGRSLGFGADVQSKKQ-RSLTELLKHVEPEDLL 163


>gi|328675799|gb|AEB28474.1| Cell division protein FtsH [Francisella cf. novicida 3523]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
 gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
          Length = 635

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + V   L N  R +++ A L     P+  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQEEAKESLKEVVDFLENPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VGR    V  + +   + A  IV     D + ++      
Sbjct: 240 GEAGVPFFSISGSEFVEM-FVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDG--- 295

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                   G +      +   + L + +  D +  I V   ++   + D
Sbjct: 296 -------GGFSGNDEREQTLNQLLTEMDGFDNQKGIVVLAATNRPDSLD 337


>gi|94498369|ref|ZP_01304927.1| ATP dependent Clp protease [Sphingomonas sp. SKA58]
 gi|94422124|gb|EAT07167.1| ATP dependent Clp protease [Sphingomonas sp. SKA58]
          Length = 776

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++R+LA
Sbjct: 463 LKRVVFGQDKAIEVLSSAIK------LSRAGLRDPDKPIGNYLFSGPTGVGKTEVARQLA 516

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            L G P  + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 TLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHS 566


>gi|187931961|ref|YP_001891946.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712870|gb|ACD31167.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|118497264|ref|YP_898314.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida U112]
 gi|194323566|ref|ZP_03057343.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208779057|ref|ZP_03246403.1| cell division protein FtsH [Francisella novicida FTG]
 gi|118423170|gb|ABK89560.1| ATP-dependent metalloprotease [Francisella novicida U112]
 gi|194322421|gb|EDX19902.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208744857|gb|EDZ91155.1| cell division protein FtsH [Francisella novicida FTG]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|89256753|ref|YP_514115.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89256757|ref|YP_514119.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502918|ref|YP_001428983.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010897|ref|ZP_02275828.1| cell division protein FtsH [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368050|ref|ZP_04984070.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|290953313|ref|ZP_06557934.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313457|ref|ZP_06804057.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144584|emb|CAJ79903.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89144588|emb|CAJ79907.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253860|gb|EBA52954.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|156253521|gb|ABU62027.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|254369652|ref|ZP_04985662.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122611|gb|EDO66740.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|134302352|ref|YP_001122321.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050129|gb|ABO47200.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|224457497|ref|ZP_03665970.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159986|gb|ADA79377.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 648

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|119222357|gb|ABL62376.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222359|gb|ABL62377.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222361|gb|ABL62378.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222363|gb|ABL62379.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222365|gb|ABL62380.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222367|gb|ABL62381.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222369|gb|ABL62382.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222441|gb|ABL62418.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222443|gb|ABL62419.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222445|gb|ABL62420.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222447|gb|ABL62421.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222449|gb|ABL62422.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222451|gb|ABL62423.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 177

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 53/155 (34%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 24  EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 82

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 83  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 142

Query: 305 -----------HVSRPADL-----LPEIQGRFPVR 323
                          P DL     +PE  GR P+ 
Sbjct: 143 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPII 177



 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 7/162 (4%)

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128
           AR+   PF   + T  TE GYVG +VE II +L+  A + +  ++R     DE+ + A  
Sbjct: 1   ARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEIDKIARK 60

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +    I   + G+       ++    + +          +      D +N     G + G
Sbjct: 61  SENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFG 120

Query: 189 ILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            L+  +                    +     L   E + L+
Sbjct: 121 GLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVEPEDLL 162


>gi|56708367|ref|YP_170263.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670837|ref|YP_667394.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370990|ref|ZP_04986993.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875190|ref|ZP_05247900.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604859|emb|CAG45943.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321170|emb|CAL09326.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569231|gb|EDN34885.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841189|gb|EET19625.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 638

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 146 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 199

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 200 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 240


>gi|254372637|ref|ZP_04988126.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570364|gb|EDN36018.1| ATP-dependent metalloprotease [Francisella novicida GA99-3549]
          Length = 638

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 146 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 199

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 200 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 240


>gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 600

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P E+     + + G  +AK  +      L+N  +  Q+ A +     PK +LL GP G 
Sbjct: 148 TPEEVKVTF-KDVAGADEAKEELQEVIEFLKNPQKFIQMGAKI-----PKGVLLYGPPGT 201

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 202 GKTLMARAVAGEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFENAKKN 248


>gi|119222255|gb|ABL62325.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222257|gb|ABL62326.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222259|gb|ABL62327.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222261|gb|ABL62328.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222263|gb|ABL62329.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222267|gb|ABL62331.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222269|gb|ABL62332.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222271|gb|ABL62333.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222273|gb|ABL62334.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222275|gb|ABL62335.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222277|gb|ABL62336.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222279|gb|ABL62337.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222281|gb|ABL62338.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222283|gb|ABL62339.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222285|gb|ABL62340.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222287|gb|ABL62341.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 164

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 53/155 (34%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 11  EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 69

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 70  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 129

Query: 305 -----------HVSRPADL-----LPEIQGRFPVR 323
                          P DL     +PE  GR P+ 
Sbjct: 130 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPII 164



 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGK 141
           T  TE GYVG +VE II +L+  A + +  ++R     DE+ + A  +    I   + G+
Sbjct: 1   TCLTEAGYVGEDVENIIVNLLQAADHDIERAQRGIVYIDEIDKIARKSENPSITRDVSGE 60

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKV 199
                  ++    + +          +      D +N     G + G L+  +       
Sbjct: 61  GVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGR 120

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                        +     L   E + L+
Sbjct: 121 SLGFGADVQSKKQRSLTELLKHVEPEDLL 149


>gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
 gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
          Length = 651

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + V   L N  R +++ A L     P+  LLVGP G GKT +++ +A
Sbjct: 181 KDVAGQEEAKEALKEVVDFLENPKRYEEIGAKL-----PRGALLVGPPGTGKTLMAKAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             AG PF  +  ++F E+ +VGR   ++ RDL   A 
Sbjct: 236 GEAGVPFFSISGSEFVEM-FVGRGAAKV-RDLFKQAN 270


>gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
 gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
          Length = 646

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + +   L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGQEEAKESVKEIVDFLHNPAKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             AG PF  +  + F E+ +VG    ++ RDL   AI
Sbjct: 251 GEAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQAI 285


>gi|332654057|ref|ZP_08419801.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
 gi|332517143|gb|EGJ46748.1| cell division protein FtsH [Ruminococcaceae bacterium D16]
          Length = 724

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 201 RDVAGQDEAKESLQEIIDILHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 255

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA---------------INIVRESRR 119
             AG PF  +  + F E+ +VG    ++ RDL   A               I   R++R 
Sbjct: 256 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKEAAKMAPCIIFIDEIDTIGKSRDNRM 313

Query: 120 DEVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
               E+       ++L  L G   +         N  EV  K L      D+ I I+
Sbjct: 314 GGNDER--EQTLNQLLAELDGFDPSKGIIVLGATNRPEVLDKALLRPGRFDRRITID 368


>gi|310815409|ref|YP_003963373.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Ketogulonicigenium vulgare Y25]
 gi|308754144|gb|ADO42073.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +++   L R + GQ  A  A+A A++              E    N L  GPTGVGKT
Sbjct: 456 TLKDLEPSLKRVVFGQDKAIEALASAIK-----LARAGLREPEKPIGNYLFAGPTGVGKT 510

Query: 68  AISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            ++++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 511 EVAKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGIDQHPHS 567


>gi|115315152|ref|YP_763875.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130051|gb|ABI83238.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 648

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   LD  + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTLDD-VAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 250


>gi|326921621|ref|XP_003207055.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like
           [Meleagris gallopavo]
          Length = 722

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 279 PIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKL-----PKGILLVGPPGTG 333

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 334 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRSLFREAKANAPCVIFIDELDSV 392

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  V   +++       
Sbjct: 393 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVVIIGATNFPEALDN 439

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     K    GR + ++         L + + D+ +D + + R ++  
Sbjct: 440 ALIRPGRFDMQVTVPKPDVRGRTEILKW-------YLNKIKYDQSVDPEIIARGTVGF 490


>gi|84514770|ref|ZP_01002133.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
 gi|84510929|gb|EAQ07383.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53]
          Length = 772

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 458 KDLEKSLKRVVFGQDRAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNPHC 567


>gi|160936160|ref|ZP_02083533.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440970|gb|EDP18694.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
          Length = 625

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E         + G+++AK   + +   L N  +   + A+L     PK
Sbjct: 157 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 211

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A + 
Sbjct: 212 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQANDK 268


>gi|258647438|ref|ZP_05734907.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
 gi|260852704|gb|EEX72573.1| putative cell division protein FtsH [Prevotella tannerae ATCC
           51259]
          Length = 712

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ+ AK  V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 188 DVAGQESAKEEVQEIVEFLKNPSKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA-- 130
            A  PF  +  + F E+ +VG     V  + R   + A  I+     D V      NA  
Sbjct: 243 EAHVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNASF 301

Query: 131 ---EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
              +ER      +L  + G    S        N  ++  K L      D++I +++ D  
Sbjct: 302 GGNDERENTLNQLLTEMDGFGTNSGVIILAATNRVDILDKALLRAGRFDRQIHVDLPDLP 361

Query: 174 SDISNF 179
             I+ F
Sbjct: 362 ERIAIF 367


>gi|119222209|gb|ABL62302.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222211|gb|ABL62303.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222213|gb|ABL62304.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222215|gb|ABL62305.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222217|gb|ABL62306.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222219|gb|ABL62307.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222221|gb|ABL62308.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222223|gb|ABL62309.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 156

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 53/157 (33%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 1   EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 59

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 60  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 119

Query: 305 -----------HVSRPADL-----LPEIQGRFPVRVH 325
                          P DL     +PE  GR P+   
Sbjct: 120 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPIITA 156


>gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 617

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 39/231 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK A+      L N  + + + A++     PK  LLVGP G GKT ++R +A 
Sbjct: 165 DVAGQDEAKEALMELVDFLHNPGKYKDIGANM-----PKGALLVGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    ++ RDL   A            +E+A        +
Sbjct: 220 EAKVPFFSISGSEFVEM-FVGMGAARV-RDLFKQA------------QEKAPCIVFIDEI 265

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLSE 194
           DA+  +                    + E +  +    S++  FD   G  +    N  E
Sbjct: 266 DAIGKRRDNGQF------------GGNDEREQTLNQLLSEMDGFDGSKGVVILAATNRPE 313

Query: 195 LFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
              K +    +   R+ V+    K    +++  +  +   D +   ++   
Sbjct: 314 SLDKALLRPGRFDRRIPVELPDLKGREAILKVHARNVRMADNIDYGTLARA 364


>gi|114769424|ref|ZP_01447050.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255]
 gi|114550341|gb|EAU53222.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255]
          Length = 771

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           RE+ + L R + GQ  A  A+A A++              E    N L  GPTGVGKT +
Sbjct: 458 RELDASLKRVVFGQDPAIDALASAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLADTLGVELIRFDMSEYMEKHAISRLIGAPPGYVGFDQGGLLTDGVDQNPHC 567


>gi|71895721|ref|NP_001026683.1| ATP-dependent metalloprotease YME1L1 [Gallus gallus]
 gi|53135987|emb|CAG32475.1| hypothetical protein RCJMB04_26f23 [Gallus gallus]
          Length = 722

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 279 PIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKL-----PKGILLVGPPGTG 333

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 334 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRSLFREAKANAPCVIFIDELDSV 392

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  V   +++       
Sbjct: 393 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVVIIGATNFPEALDN 439

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     K    GR + ++         L + + D+ +D + + R ++  
Sbjct: 440 ALIRPGRFDMQVTVPKPDVRGRTEILKW-------YLNKIKYDQSVDPEIIARGTVGF 490


>gi|290969236|ref|ZP_06560761.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780742|gb|EFD93345.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1
           str. 28L]
          Length = 646

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK  ++     LRN  +   + A +     PK +LL GP G GKT ++R +A
Sbjct: 155 KDVAGEDEAKEELSELVEFLRNPGKYNDIGAKI-----PKGVLLFGPPGTGKTLLARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 210 GEAGVPFFSISGSDFVEM-FVGVGASRVRDLFLQAKKNAPCIVFIDEIDAV 259


>gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
 gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
          Length = 456

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  + +++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 206 KDVAGQDEAKESLQEVVDFLHNPKKYREIGAKL-----PKGALLVGPPGTGKTLLAKAVA 260

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 261 GEAGVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 294


>gi|119386519|ref|YP_917574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus
           denitrificans PD1222]
 gi|119377114|gb|ABL71878.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus
           denitrificans PD1222]
          Length = 772

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 459 KDLDATLKRLVFGQDAAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 568


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 37/280 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +  QL   L     PK +LLVGP G G
Sbjct: 267 PEEIHVTFDD-VKGADEAKQELKDVVEFLKNPDKFSQLGGKL-----PKGVLLVGPPGTG 320

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 321 KTLLARAVAGEAGVPFFHAAGPEFDEILVGQGARRVRDLFKSAKEKAPCVIFIDEIDSVG 380

Query: 124 EQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVAD 171
            + + +     A + I   L           V        R  L    +     D+EV  
Sbjct: 381 AKRTNSVLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRRDDLDQALLRPGRFDVEVTV 440

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            + D +     G   +  L L ++ +K +      +               + + +++  
Sbjct: 441 PTPDFT-----GRKEILGLYLGKVLAKDVDLELLARGTTGFTGA-------DLENMVNQA 488

Query: 232 TVHRDSIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREG 270
            +   +I   +   + +L+   DK++            E 
Sbjct: 489 ALKA-AIDGADCVSMKYLESARDKVLMGPERKSRIPDEEA 527


>gi|86157216|ref|YP_464001.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773727|gb|ABC80564.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 760

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++              E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIEAIASAIK-----LSRSGLASPEKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LAR+ G  F++ ++T++ E            GYVG +   ++ D +     
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKTPY 559


>gi|210623041|ref|ZP_03293528.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
 gi|210153844|gb|EEA84850.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275]
          Length = 627

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK A+   +    N  + +++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 166 DVAGQDEAKEALTEIVDYLHNPAKYREIGAQM-----PKGALLVGPPGTGKTLLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++       
Sbjct: 221 EAGVPFFSISGSEFIEM-FVGMGAARVRDLFKQAKEKAPCIVFIDEIDAIGKK------- 272

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
              D   G        +   + L + +  D  + + +   ++   + D
Sbjct: 273 --RDGANGMGGNDEREQTLNQLLSEMDGFDGGVGVVILAATNRPESLD 318


>gi|224044755|ref|XP_002188216.1| PREDICTED: YME1-like 1 isoform 2 [Taeniopygia guttata]
          Length = 723

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 280 PIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKL-----PKGILLVGPPGTG 334

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 335 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRSLFREAKANAPCVIFIDELDSV 393

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 394 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVT 453

Query: 171 DTSSDI 176
               D+
Sbjct: 454 VPKPDV 459


>gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum]
          Length = 706

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 108/312 (34%), Gaps = 44/312 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 227 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 284

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 285 VPFFSCSGSEFEEM-FVGVGARRV-RDLFTAA----------KKRSPCIIFIDE--IDAI 330

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    +      ++   ++++    +  I           G  N  E   K
Sbjct: 331 GG------SRNPKDQMYMKMTLNQMLVELDGFKQNEGIIVI--------GATNFPESLDK 376

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
            +    +    + V     +   ++M     +++  D V    I      G    D  + 
Sbjct: 377 ALVRPGRFDRHVVVPNPDVEGRRQIMESHMSKVLKADDVDPMIIARC-TPGFSGADLANL 435

Query: 255 I----VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           +    +         VS   ++     ++ GS   +   S  +         AFH    A
Sbjct: 436 VNVAALRAAMNGSKAVSMHDLEFARDKIMMGSERKSAVISEESRKT-----TAFHEGGHA 490

Query: 311 DLLPEIQGRFPV 322
            +     G  PV
Sbjct: 491 LVAVHTDGALPV 502


>gi|229829568|ref|ZP_04455637.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM
           14600]
 gi|229791557|gb|EEP27671.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM
           14600]
          Length = 773

 Score = 73.4 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGQDEAKESLVEVVDFLHNPRKYIEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 248 GEAGVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 281


>gi|119222265|gb|ABL62330.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 164

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 53/155 (34%)

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPL 278
            D  + ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L
Sbjct: 11  EDVENIIVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKL 69

Query: 279 VEGSSVST-----------KYGSINTDHILFIASGAF----------------------- 304
           +EG+  +            ++  ++T +ILFI  GAF                       
Sbjct: 70  IEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQ 129

Query: 305 -----------HVSRPADL-----LPEIQGRFPVR 323
                          P DL     +PE  GR P+ 
Sbjct: 130 SKKQRSLTELLKHVEPEDLLKFGMIPEFIGRLPII 164



 Score = 46.5 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 7/149 (4%)

Query: 87  TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGK 141
           T  TE G VG +VE II +L+  A + +  ++R     DE+ + A  +    I   + G+
Sbjct: 1   TSVTEAGNVGEDVENIIVNLLQAADHDIERAQRGIVYIDEIDKIARKSENPSITRDVSGE 60

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKV 199
                  ++    + +          +      D +N     G + G L+  +       
Sbjct: 61  GVQQALLKLIEGTVANVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGR 120

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                        +     L   E + L+
Sbjct: 121 SLGFGADVQSKKQRSLTELLKHVEPEDLL 149


>gi|299144251|ref|ZP_07037331.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518736|gb|EFI42475.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 623

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 35/268 (13%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A+      L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 184 VAGQDEAKEALTEIVDFLHNPKKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++        
Sbjct: 239 ADVPFFSISGSEFVEM-FVGLGAAKVRDLFKQAHEKAPCIVFIDEIDTIGKRRDGA---- 293

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-------FDIPGGAS 186
               + G      T      ++   E +D  + +   +    +         FD      
Sbjct: 294 ---GISGNDEREQTLNQLLSEMDGFEGNDGVVILAATNRPESLDPALLRPGRFDRRIPVE 350

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
           +  L   E   KV  +   K   +   +            L +M  ++  +++ V     
Sbjct: 351 LPDLAGREAILKVHSTKIIKDDNIDYTQVAKATAGASGADLANM--INEAALRAVREGR- 407

Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRD 274
                 DK+  RD    + V   G +R 
Sbjct: 408 ------DKMTQRDIEESVEVVLAGYERK 429


>gi|224044753|ref|XP_002188188.1| PREDICTED: YME1-like 1 isoform 1 [Taeniopygia guttata]
          Length = 717

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 274 PIQLKNVTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKL-----PKGILLVGPPGTG 328

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 329 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRSLFREAKANAPCVIFIDELDSV 387

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 388 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVT 447

Query: 171 DTSSDI 176
               D+
Sbjct: 448 VPKPDV 453


>gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
 gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
          Length = 604

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 12/114 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++AK  +      L N  + +++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 154 NDVAGQEEAKENLQEIVDFLNNPAKYKEIGAKM-----PKGALLVGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             AG PF  +  ++F E+ +VGR    V  + +   + A  IV     D + ++
Sbjct: 209 GEAGVPFFSISGSEFVEM-FVGRGAAKVRDLFKQAREKAPCIVFIDEIDTIGKK 261


>gi|84683661|ref|ZP_01011564.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84668404|gb|EAQ14871.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2654]
          Length = 777

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 RDLEGSLKRVVFGQDDAITALSSAIK-----LSRAGLRDPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 ARQLASQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 572


>gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 16/103 (15%)

Query: 13  VSELDRYIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
            + LD  + GQ++AK A+   +       R+++           MPK  LLVGP G GKT
Sbjct: 166 KTFLD--VAGQEEAKAALQEMVEFLKSPERYKKIGAQ-------MPKGALLVGPPGTGKT 216

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PF  +  ++F E+ +VGR   ++ RDL   A
Sbjct: 217 LLAKAVAGEANVPFFSISGSEFVEM-FVGRGAARV-RDLFKQA 257


>gi|153803692|ref|ZP_01958278.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
          cholerae MZO-3]
 gi|124120769|gb|EAY39512.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio
          cholerae MZO-3]
          Length = 53

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 39/49 (79%)

Query: 6  NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
            +PREIVSEL+R+IIGQ  AKRAVAIALRNRWRR QL   LR E+ PK
Sbjct: 3  EMTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPK 51


>gi|33413746|gb|AAN17725.1| metalloprotease [Mus musculus]
          Length = 668

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 386 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 432

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 433 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDKSVDPEIIARGTVGF 483


>gi|126739846|ref|ZP_01755537.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
 gi|126719078|gb|EBA15789.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. SK209-2-6]
          Length = 743

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 430 KDLEKTLKRVVFGQDDAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 484

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 485 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 539


>gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14]
 gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14]
          Length = 695

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 200 KDVAGQEGAKQEVEEIVEFLKNPKKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  + R   + A  I+     D V R ++   A
Sbjct: 255 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARSKNPA 313

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D+EI +++ D 
Sbjct: 314 MGGNDERENTLNALLTEMDGFGTNSGVIILAATNRVDMLDKALLRAGRFDREIHVDLPDL 373

Query: 173 SSDISNFDIP 182
           +   + F++ 
Sbjct: 374 NERKAIFNVH 383


>gi|307294290|ref|ZP_07574134.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium
           chlorophenolicum L-1]
 gi|306880441|gb|EFN11658.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium
           chlorophenolicum L-1]
          Length = 773

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++
Sbjct: 460 LDTDLKRVVFGQNRAIEVLSSAIK------LSRAGLRDPDKPIGNYLFSGPTGVGKTEVA 513

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA L G P  + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 RQLATLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHC 567


>gi|291295836|ref|YP_003507234.1| ATP-dependent Clp protease ATP-binding subunit clpA [Meiothermus
           ruber DSM 1279]
 gi|290470795|gb|ADD28214.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           ruber DSM 1279]
          Length = 746

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R + GQ  A   VA A++         A LRD   P    L  GPTGVGKT ++
Sbjct: 451 LEQELKRAVFGQDRAVEEVASAIK------LARAGLRDPQKPMGSYLFAGPTGVGKTELA 504

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           R+LA   G P ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 RQLAASLGVPLLRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTDAVLQNPHC 558


>gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 807

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 37/183 (20%)

Query: 19  YIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +       R+ R            P+ ILLVGP G GKT +++ +
Sbjct: 341 DVAGVDEAKEELEEIVEFLKHPERYSRLGA-------RPPRGILLVGPPGTGKTLLAKAV 393

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESR 118
           A  A  PFI    ++F E+ YVG    ++ RDL                  A+   R+ R
Sbjct: 394 AGEADVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIVFIDEIDAVAKGRDGR 451

Query: 119 RDEVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
              V          ++L  L G  ++S        N  +V    LR     D+ + +E  
Sbjct: 452 LRSVGNDEREQTLNQLLTELDGFESSSTVIVLGATNRADVLDPALRRPGRFDRIVTVEPP 511

Query: 171 DTS 173
           D  
Sbjct: 512 DRQ 514


>gi|89069066|ref|ZP_01156447.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           granulosus HTCC2516]
 gi|89045435|gb|EAR51500.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           granulosus HTCC2516]
          Length = 776

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 KDLEGSLKRVVFGQDPAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++L+++ G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 AKQLSQILGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 572


>gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 617

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 12/101 (11%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            + LD  + GQ++AK A+      L++  R  Q+ A +     PK  LLVGP G GKT +
Sbjct: 165 KTFLD--VAGQEEAKAALQEMVEFLKSPQRYTQIGAQM-----PKGALLVGPPGTGKTLL 217

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  ++F E+ +VGR   ++ RDL   A
Sbjct: 218 AKAVAGEANVPFFSISGSEFVEM-FVGRGAARV-RDLFKQA 256


>gi|116519|sp|P05444|CLPA_RHOBL RecName: Full=ClpA homolog protein
 gi|45972|emb|CAA77308.1| URF 2 [Rhodobacter blasticus]
          Length = 793

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R++   L R + GQ  A  A++ +++              E    N L  GPTGVGKT
Sbjct: 478 TLRDLERTLKRLVFGQDKAIEALSASIK-----LARAGLREPEKPIGNYLFTGPTGVGKT 532

Query: 68  AISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 533 EVAKQLAATLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 589


>gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
 gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
          Length = 655

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 123/325 (37%), Gaps = 52/325 (16%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E       + + GQ++AK +++  +       + +++ A      +PK
Sbjct: 153 MNFGKSNAKIYVENKTGKTFKDVAGQEEAKDSLSEIVDFLHKPGKYKEIGAK-----VPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLMAKAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKV-------MGSGR 204
            L      D+++ +E+ D         +          ++  E+  +        + +  
Sbjct: 327 ALTRPGRFDRQVQVELPDLKGREDILKVHAKNIKREDDIDYEEIAKRTAGTSGADLANIV 386

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
            +    +V++   +L ++      D++      I   +    V  D+  KI+A       
Sbjct: 387 NEGALRAVREGRKKLTQE------DLEESIETVIAGQQKKNAVISDDQKKIIAYHEVGHA 440

Query: 265 GVSREGVQRDLLPLVEGSSVSTKYG 289
            V+   +Q    P+ + + V    G
Sbjct: 441 LVA--AIQTQKTPVTKITIVPRTGG 463


>gi|253579752|ref|ZP_04857020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848751|gb|EES76713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 656

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 RDVAGQDEAKESLQEVVDFLHNPGKYTTIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 240 GEAHVPFFSLSGSEFVEM-FVGVGASRV-RDLFEEAKKN 276


>gi|312220414|emb|CBY00355.1| similar to intermembrane space AAA protease IAP-1 [Leptosphaeria
           maculans]
          Length = 772

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 25/151 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +  +L   L     PK +LL+GP G GKT ++R +A 
Sbjct: 301 DVHGCDEAKEELLDVVDFLKNPEKYNKLGGRL-----PKGVLLIGPPGTGKTLLARAVAG 355

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ R+L   A            R +A        L
Sbjct: 356 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTAA------------RSKAPAIVFIDEL 401

Query: 136 DALVGKTAT---SNTREVFRKKLRDGEISDK 163
           DA+ GK  +   +  R+   + L D +  D+
Sbjct: 402 DAIGGKRKSRDANYHRQTLNQLLNDLDGFDQ 432


>gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 621

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G ++ KR +      L+N  +   + A++     PK +LLVGP G GKT ++R +A
Sbjct: 165 RDVAGHEEVKRELMEVVDFLKNPQKYIAIGAEI-----PKGVLLVGPPGTGKTLLARAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  ++F E+ +VG    ++ R L D A
Sbjct: 220 GEAGVPFFSVSASEFMEM-FVGVGASRV-RTLFDEA 253


>gi|303272437|ref|XP_003055580.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463554|gb|EEH60832.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 570

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +A  + +  +R +    L     P  +LLVG  G GKT ++R +A  AG
Sbjct: 107 DVAGVDEAKEELAEIV-DILKRPEHYTRLGA-RPPSGVLLVGAPGTGKTLLARAVAGEAG 164

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVRE 124
            PFI V  ++F E+ YVG     V  + +   + A +IV     D V +
Sbjct: 165 VPFISVSASEFVEL-YVGMGAARVRDVFQRAREQAPSIVFIDEIDAVAK 212


>gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 678

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 119/319 (37%), Gaps = 40/319 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E         + GQ++AK ++      L    + +++ A     ++PK
Sbjct: 153 MNFGKSNAKIYMENKTGKTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+ + +E+ D         +         ++  E  +K         +   V
Sbjct: 327 ALTRPGRFDRRVQVELPDLKGREDILKVHAKKIKRENDIDYEEIAKRTAGTSGADLANIV 386

Query: 213 QKCYPELMRDESDRL--IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R+  +RL   D++      I   +    V  D+  KI+A        V+   
Sbjct: 387 NEGALRAVREGRNRLTQTDLEESIETVIAGAQKKNAVISDDQKKIIAYHEVGHALVA--A 444

Query: 271 VQRDLLPLVEGSSVSTKYG 289
           +Q    P+ + + V    G
Sbjct: 445 IQTQKTPVTKITIVPRTGG 463


>gi|312898242|ref|ZP_07757633.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
 gi|310620739|gb|EFQ04308.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359]
          Length = 649

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  ++  +   RN  +   + A +     PK +LL GP G GKT ++R +A
Sbjct: 141 KDVAGADEAKEELSEIVEFLRNPAKYNAIGAKI-----PKGVLLFGPPGTGKTLLARAVA 195

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 196 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFAQAKKN 232


>gi|218135109|ref|ZP_03463913.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990494|gb|EEC56505.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC
           43243]
          Length = 652

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 183 RDVAGQDEAKESLTEIVDFLHNPDKYSHIGAKL-----PKGALLVGPPGTGKTLLAKAVA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 271


>gi|119222125|gb|ABL62260.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222127|gb|ABL62261.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222129|gb|ABL62262.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222131|gb|ABL62263.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222133|gb|ABL62264.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222135|gb|ABL62265.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222137|gb|ABL62266.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222139|gb|ABL62267.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222141|gb|ABL62268.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222143|gb|ABL62269.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222145|gb|ABL62270.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222147|gb|ABL62271.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222149|gb|ABL62272.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222151|gb|ABL62273.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222153|gb|ABL62274.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222155|gb|ABL62275.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222157|gb|ABL62276.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222159|gb|ABL62277.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222161|gb|ABL62278.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222163|gb|ABL62279.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222165|gb|ABL62280.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222167|gb|ABL62281.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222169|gb|ABL62282.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222171|gb|ABL62283.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222173|gb|ABL62284.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222175|gb|ABL62285.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222177|gb|ABL62286.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222179|gb|ABL62287.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222181|gb|ABL62288.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222183|gb|ABL62289.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222185|gb|ABL62290.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222187|gb|ABL62291.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222189|gb|ABL62292.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222191|gb|ABL62293.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222193|gb|ABL62294.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222195|gb|ABL62295.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222197|gb|ABL62296.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222199|gb|ABL62297.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222201|gb|ABL62298.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222203|gb|ABL62299.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222205|gb|ABL62300.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222207|gb|ABL62301.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 153

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 53/151 (35%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  
Sbjct: 4   IVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVA 62

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  ++T +ILFI  GAF                             
Sbjct: 63  NVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRS 122

Query: 305 -----HVSRPADL-----LPEIQGRFPVRVH 325
                    P DL     +PE  GR P+   
Sbjct: 123 LTELLKHVEPEDLLKFGMIPEFIGRLPIITA 153


>gi|84468286|dbj|BAE71226.1| putative zinc dependent protease [Trifolium pratense]
          Length = 692

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 96/268 (35%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 230 DDVAGVDEAKQDFMEVVEFLKKPERFTTIGARI-----PKGVLLVGPPGTGKTLLAKAIA 284

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 285 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 343

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 344 GGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDIR 403

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  + GG      ++S                  V    P     +   L++   +
Sbjct: 404 GRTEILKVHGGNKKFDADVS---------------LEVVAMRTPGFSGADLANLLNEAAI 448

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                  VE       D  D+IVA   G
Sbjct: 449 LAGRRGKVEISSKEIDDSIDRIVAGMEG 476


>gi|319790336|ref|YP_004151969.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1]
 gi|317114838|gb|ADU97328.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1]
          Length = 631

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 150/440 (34%), Gaps = 56/440 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  V+  +   +N  + QQL   +     PK +LL GP G GKT +++ +A
Sbjct: 157 KDVAGIDEVKEEVSEIVDFLKNPKKYQQLGGRI-----PKGVLLAGPPGTGKTLLAKAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PF+ V  ++F E+ +VG    ++ RDL D     A  IV     D V  +     
Sbjct: 212 GEANVPFLSVSGSEFVEM-FVGVGASRV-RDLFDQAKKHAPCIVFIDEIDAVGRK----- 264

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
             R      G      T      ++   E SD  I I     +++  +   P     G  
Sbjct: 265 --RGAGISGGHDEREQTLNQLLVEMDGFESSDGIIVI----AATNRPDILDPALLRPGRF 318

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
           +        +   + +   + +      L  D     +D++ + R +           ++
Sbjct: 319 DRQIFVP--LPDVKGRLEILKIHTRNKPLADD-----VDLEVIARSTPGFSGADLANIVN 371

Query: 251 EFDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           E   I AR +   I +    E   +  + +   S V ++   I T +     +    +  
Sbjct: 372 EAALIAARKNHGKITMEDFEEAKDKVTMGIERKSMVLSEQEKITTAYHEAGHALVAKLLP 431

Query: 309 PADLLPE--IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL--- 360
            AD + +  I  R       + L + D     T T+  L+ +   L      E + L   
Sbjct: 432 NADKVHKVTIIPRGKALGVTQQLPEEDRY---TYTKEYLLDRLAVLFGGRVAEELALGTI 488

Query: 361 ---------DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411
                      TE +   +A+  ++       +  R        ++ +      D + K 
Sbjct: 489 STGAGNDIERATELARRMVAEWGMSEKIGPISVKIREQLGEPVEIVSEEMRRLIDKEVKR 548

Query: 412 VVIDAEYVRLHIGDFPSETD 431
           + I   Y R          D
Sbjct: 549 I-ITETYNRTK-ELLSQNMD 566


>gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 646

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +   +   + Q++ A       P+ +LLVGP G GKT +++ +A
Sbjct: 208 KDVAGQDEAKESLVEVVDYLKEPKKYQEIGAQ-----APRGVLLVGPPGTGKTLMAKAVA 262

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  ++F E+ +VGR   ++ RDL   A + 
Sbjct: 263 GEAGVPFFSIAGSEFVEM-FVGRGAAKV-RDLFKQANDK 299


>gi|149202407|ref|ZP_01879380.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius
           sp. TM1035]
 gi|149144505|gb|EDM32536.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius
           sp. TM1035]
          Length = 763

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 449 KDLEGTLKRVVFGQDAAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 504 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 558


>gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 795

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPT 62
             + +++   L   + G  +A   +      L+N  R Q L A +     PK +LL GP 
Sbjct: 140 QLT-KDMPKTLFGDVAGADEAVEELHEIKDFLQNPGRYQALGAKI-----PKGVLLYGPP 193

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 194 GTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 239


>gi|114762057|ref|ZP_01441525.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pelagibaca
           bermudensis HTCC2601]
 gi|114545081|gb|EAU48084.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. HTCC2601]
          Length = 776

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 KDLEKTLKRVVFGQDTAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +    + D VD   + 
Sbjct: 518 AKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGQLTDGVDQHPHC 572


>gi|206896312|ref|YP_002247246.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738929|gb|ACI18007.1| putative cell division protease FtsH [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 605

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 34/283 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   L+N  + Q + A +     PK +LLVGP GVGKT +++ +A
Sbjct: 165 KDVAGSEEAKKDLLEIVDFLKNPKKYQLIGAKI-----PKGVLLVGPPGVGKTLMAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             AG PF  V  ++F E+ +VG    ++ RDL +     A  IV     D V        
Sbjct: 220 GEAGVPFFSVSGSEFVEM-FVGVGAARV-RDLFEQARKFAPCIVFIDEIDAV-------G 270

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
            ER      G      T     + L + +  D    I V   ++     D P     G  
Sbjct: 271 RERGAGIGGGHDEREQTLN---QLLVEMDGFDPYAGIIVLAATNRPDILD-PALLRPGRF 326

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
           +   +    M     +K  + +      + +D     +D+D + + +           ++
Sbjct: 327 DRKVILD--MPDVNGRKQILLIHMRGKPISQD-----VDVDRLAQLTPGFSGADLANLVN 379

Query: 251 EFDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTKYGSI 291
           E   + AR + N + +    E V++ +L    G  +S +   I
Sbjct: 380 EAALLAARKNRNLVTMEEFEEAVEKVMLGPQRGRVLSAEEKKI 422


>gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
 gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
          Length = 626

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  + + + A +     PK +LLVGP G GKT ++R +A
Sbjct: 169 QDVAGEDEAKESLQEIVDFLHNPKKYEDIGAKM-----PKGVLLVGPPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG      +RDL   A
Sbjct: 224 GEAGVPFFSIAGSEFVEM-FVGMGA-SKVRDLFKQA 257


>gi|86136457|ref|ZP_01055036.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
 gi|85827331|gb|EAQ47527.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter
           sp. MED193]
          Length = 776

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 KDLEKSLKRVVFGQDDAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 572


>gi|85704172|ref|ZP_01035275.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. 217]
 gi|85671492|gb|EAQ26350.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           sp. 217]
          Length = 778

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A   ++ A++              E    N L  GPTGVGKT +
Sbjct: 464 KDLEASLKRVVFGQDAAIETLSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 518

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 519 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|167626375|ref|YP_001676875.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596376|gb|ABZ86374.1| Microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 649

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   L   + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTL-EDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQA 250


>gi|241668806|ref|ZP_04756384.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 649

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   L   + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 156 EIKVTL-EDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 210 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQA 250


>gi|189191032|ref|XP_001931855.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973461|gb|EDU40960.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 784

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +  +L   L     PK +LLVGP G GKT ++R  A 
Sbjct: 311 DVHGCDEAKEELLDVVDFLKNPEKYNKLGGRL-----PKGVLLVGPPGTGKTLLARACAG 365

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ R+L   A            R +A        L
Sbjct: 366 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTAA------------RSKAPAIVFIDEL 411

Query: 136 DALVGKTAT---SNTREVFRKKLRDGEISDK 163
           DA+ GK  +   +  R+   + L D +  D+
Sbjct: 412 DAVGGKRKSRDANYHRQTLNQLLNDLDGFDQ 442


>gi|254877338|ref|ZP_05250048.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843359|gb|EET21773.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 639

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI   L   + G  +AK  VA  +   R   + +++   +     PK +L+VGP G GKT
Sbjct: 146 EIKVTL-EDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKI-----PKGVLMVGPPGTGKT 199

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 200 LLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQA 240


>gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 635

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 30/177 (16%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK A+   +    N  R + + A     +MPK +LLVGP G GKT +++ +A
Sbjct: 167 KDVAGQDEAKEALQEIVNYLHNPARYKAIGA-----VMPKGVLLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA- 130
             A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++    A 
Sbjct: 222 GEAKVPFFSISGSEFIEM-FVGMGAARVRDLFKQAQEKAPCIVFIDEIDAIGKKRDNGAF 280

Query: 131 ---EER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
              +ER      +L  + G          A +N  EV  K L      D+ + +E+ 
Sbjct: 281 GSNDEREQTLNQLLSEMDGFDGSKGVIILAATNRPEVLDKALLRPGRFDRRVPVELP 337


>gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis]
          Length = 705

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 97/267 (36%), Gaps = 32/267 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI  + +  + G +DAK  +      LRN  +   L   L     PK +LLVGP G G
Sbjct: 283 PEEINVKFND-VKGVEDAKSELMDVVEFLRNPDKFSALGGKL-----PKGVLLVGPPGTG 336

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDE 121
           KT ++R +A  AG PF      +F EI +VG+   ++ RDL       A  ++     D 
Sbjct: 337 KTLLARAVAGEAGVPFFYAAGPEFDEI-FVGQGARRV-RDLFKAAKEHAPCVIFIDEIDS 394

Query: 122 VREQ-----ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEI 165
           V  +        +A + I   L                 +N R+   K L      D E+
Sbjct: 395 VGAKRTNSVIHPHANQTINQLLSEMDGFHRNEGVIVIGATNRRQDLDKALLRPGRFDSEV 454

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV-QKCYPELMRDES 224
            ++  D        D+  G  +     +EL +K         I   + Q      +    
Sbjct: 455 TVKAPDLMERKEIIDLYLGKVLTRDVNAELLAKRTIGFTGADIENMINQAALRAAIEGAE 514

Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDE 251
              +D     +D + M        LDE
Sbjct: 515 YVTMDHLERAKDKVIMGPEGKKKILDE 541


>gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK   + +   L +  +  ++ A+L     PK  LLVGP G GKT +++ +A
Sbjct: 163 EDVAGQDEAKEALKEIVDFLHDPGKYAEIGANL-----PKGALLVGPPGTGKTLLAQAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF  +  ++F E+ +VG     V  +    V+ A  IV     D + ++
Sbjct: 218 GEAEVPFFSISGSEFVEM-FVGMGAAKVRDLFSQAVEKAPCIVFIDEIDTIGKK 270


>gi|254474645|ref|ZP_05088031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
 gi|214028888|gb|EEB69723.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp.
           R11]
          Length = 773

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLERSLKRVVFGQDAAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|118490708|ref|XP_001238663.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
 gi|109238446|emb|CAK51410.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
          Length = 296

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           SP +I    D  + G ++ K+ V      L+N  + Q + A L     PK ILL GP G 
Sbjct: 54  SPEDIKDSFDS-VKGYEEVKKEVREIIEYLKNPEKFQAIGAKL-----PKGILLHGPPGT 107

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115
           GKT ++R +A  AG PF+    + F E+ +VG    +I R L   A    R
Sbjct: 108 GKTLLARAIAGEAGVPFLHASGSDFEEM-FVGVGASRI-RSLFAAARAKGR 156


>gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
 gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
          Length = 635

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 23/170 (13%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK   R +   L N  +   + A       PK  LLVGP G GKT ++R +A
Sbjct: 184 KDVAGQDEAKDSLREIVSFLDNPKKYAAIGA-----RCPKGALLVGPPGTGKTLLARAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF ++  ++F E+ +VGR    V  + +   + A  I+     D V ++  ++  
Sbjct: 239 GEAKVPFFQISGSEFVEM-FVGRGAAKVRDLFKQAKEKAPCIIFIDELDTVGKKRGVSVN 297

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                      +     +   + L + +  D    I V   ++     D+
Sbjct: 298 -----------SNDEREQTLNQLLAEMDGFDNHKGIVVLAATNRPETLDL 336


>gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
 gi|99038212|gb|ABF64824.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp.
           TM1040]
          Length = 792

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 479 KDLEASLKRVVFGQDAAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 533

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 534 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 588


>gi|52138617|ref|NP_446134.2| ATP-dependent zinc metalloprotease YME1L1 [Rattus norvegicus]
 gi|51859432|gb|AAH81751.1| YME1-like 1 (S. cerevisiae) [Rattus norvegicus]
          Length = 715

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 386 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 432

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 433 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDKSVDPEIIARGTVGF 483


>gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 646

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 16  LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK   R V   L+   +  QL A +     PK +LL GP G GKT +++ 
Sbjct: 152 LFRDVAGADEAKQELREVVEFLKAPQKYNQLGAKI-----PKGVLLYGPPGTGKTLLAKA 206

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +A  AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 207 VAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 245


>gi|166032913|ref|ZP_02235742.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC
           27755]
 gi|166027270|gb|EDR46027.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC
           27755]
          Length = 441

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
            ++P+ I   LD  +  Q++AK+A AI L N  +              +N++L GPTG G
Sbjct: 130 EWTPQMIYEYLDENVYRQENAKKAAAIMLYNHLK-----------GRRRNMILAGPTGCG 178

Query: 66  KTAISRRLARLAGAPFIKV 84
           KT I R L +    PFIK+
Sbjct: 179 KTEIWRSLQKR--FPFIKI 195



 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 52/222 (23%)

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS-------TKYGSINTDHILF 298
           ++ +DE DK+     G+        +Q + L +++G  V         K  +I+  H+ F
Sbjct: 228 LIVIDEADKLFEPSIGSAGVDYSRKIQNEFLKIMDGDKVDFVSEGNDAKKTTIDCSHVSF 287

Query: 299 IASGAF------HVSRPA--------------------DLL------PEIQGRFPVRVHL 326
           +  G+F         +PA                    DL+       EI GR    V L
Sbjct: 288 VFCGSFETLLQNREDKPATIGFFQNTAPDEEAESITIEDLVEYGNVRREIAGRIQQIVAL 347

Query: 327 KSLNKSDFRLILTDTES-NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
            +L   DF  IL   +  + I Q ++L     + L   + +   LA+ A   N     +G
Sbjct: 348 NALTVDDFEHILNSRKQMSPIRQLEKL---YMVNLSVDDKTKRILAEKAAGKN-----LG 399

Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427
            R +++ ++ +L++  F   D +   +      V       P
Sbjct: 400 CRYMRSQIQSMLDEKMFDDPDCRNFKL----SLVEEKEEGLP 437


>gi|14043646|gb|AAH07795.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
          Length = 740

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 330 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 384

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 385 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 443

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 444 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 503

Query: 171 DTSSDISN 178
               D+  
Sbjct: 504 VPRPDVKG 511


>gi|295696291|ref|YP_003589529.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
 gi|295411893|gb|ADG06385.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912]
          Length = 493

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 22  GQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           GQ+ AKR +  AL   R+R +     +R     K ILL GP G GKT +++  A    + 
Sbjct: 65  GQEHAKRELMEALDFLRYRDKIRQLGIR---PLKGILLTGPPGTGKTLMAKAAATYTDSS 121

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG 140
           F+    ++F E+ YVG   +++ RDL   A    R+S R E ++ A +  +E  +D + G
Sbjct: 122 FVSASGSEFVEM-YVGVGAQRV-RDLFRRA----RQSARKEGKDSAIVFIDE--IDVIGG 173

Query: 141 KTATSNTRE 149
           +    + +E
Sbjct: 174 RRGNHSHQE 182


>gi|294011232|ref|YP_003544692.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium
           japonicum UT26S]
 gi|292674562|dbj|BAI96080.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium
           japonicum UT26S]
          Length = 773

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++
Sbjct: 460 LDTDLKRVVFGQNRAIEVLSSAIK------LSRAGLRDPDKPIGNYLFSGPTGVGKTEVA 513

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA L G P  + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 RQLAHLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHS 567


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 105/298 (35%), Gaps = 39/298 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I S     + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 307 PEDI-SVTFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 360

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 361 KTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVG 420

Query: 124 EQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVAD 171
            + + +     A + I   L           V        R  L    +     D+EV  
Sbjct: 421 AKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGRFDVEVVV 480

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            + D +     G   +    LS++ SK +   +  +               + + +++  
Sbjct: 481 PTPDFT-----GRKEILTHYLSKVLSKDINIDQLARGTTGFTGA-------DIENMVNQA 528

Query: 232 TVHRDSIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + R +I   E  G+  L+   DK++            E     +    EG      Y
Sbjct: 529 AL-RAAIDGAETVGMKHLENARDKVLMGPERKSRLPDEEA--NKITAYHEGGHAIVAY 583


>gi|149028588|gb|EDL83929.1| YME1-like 1 (S. cerevisiae) [Rattus norvegicus]
          Length = 715

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 386 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 432

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 433 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDKSVDPEIIARGTVGF 483


>gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  S  +I  E         + GQ +AK A+      L +  +  ++ A L     PK
Sbjct: 145 MSFGKSNAKIYVEAETGKTFADVAGQDEAKEALTEIVDFLHHPKKYSEIGATL-----PK 199

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 200 GALLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 254


>gi|169334953|ref|ZP_02862146.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257691|gb|EDS71657.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
          Length = 604

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK A+      L N  R QQ+ A +     PK  LLVGP G GKT +++ +A
Sbjct: 165 KDVAGEDEAKEALTEIVDFLHNPGRYQQIGAKI-----PKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 220 GEANVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 254


>gi|153813325|ref|ZP_01965993.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
 gi|149830615|gb|EDM85706.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174]
          Length = 687

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 240 GEANVPFFSLSGSEFVEM-FVGVGASRV-RDLFEEAKKN 276


>gi|259416112|ref|ZP_05740032.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
 gi|259347551|gb|EEW59328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter
           sp. TrichCH4B]
          Length = 778

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 465 KDLEASLKRVVFGQDAAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 519

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
 gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
          Length = 828

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 30/172 (17%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 369 DVHGCDEAKEELQELIDFLRNPEKYSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 423

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ RDL   A            + +A      ++L
Sbjct: 424 EAGVPFFNMSGSEFEEV-YVGVGAKRV-RDLFAAA------------KAKAPSITLNQLL 469

Query: 136 DALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
             L G    S        N  E   K L      D+ + + + D    ++  
Sbjct: 470 TELDGFEQNSGVIIIGATNFPESLDKALTRPGRFDRNVVVSLPDVRGRMAIL 521


>gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum]
          Length = 714

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 111/312 (35%), Gaps = 44/312 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 226 DVKGVDEAKSELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 283

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 284 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAA----------KKRSPCIIFIDE--IDAI 329

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N +E   K
Sbjct: 330 GG------SRNPKDQQYMRMTLNQLLVELDGFKQNDGIIVI--------AATNFAESLDK 375

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
            +    +    + V     +   +++     +++  D V    I      G    D  + 
Sbjct: 376 ALVRPGRFDRNIVVPNPDVEGRKQILESHMSKILKADDVDLMIIARG-TPGFSGADLANL 434

Query: 255 I----VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310
           +    V         VS   ++     ++ GS   + + S  +  +      A+H    A
Sbjct: 435 VNIAAVKAAMDGAKAVSLADLEHAKDKIMMGSERKSAFISQESRKL-----TAYHEGGHA 489

Query: 311 DLLPEIQGRFPV 322
            +     G  PV
Sbjct: 490 LVAIHTDGALPV 501


>gi|254466814|ref|ZP_05080225.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
 gi|206687722|gb|EDZ48204.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodobacterales bacterium Y4I]
          Length = 774

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 461 KDLEKSLKRVVFGQDDAITALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 515

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 516 AKQLADQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 570


>gi|254485980|ref|ZP_05099185.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter
           sp. GAI101]
 gi|214042849|gb|EEB83487.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter
           sp. GAI101]
          Length = 773

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLEASLKRVVFGQDAAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 569


>gi|254441332|ref|ZP_05054825.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
 gi|198251410|gb|EDY75725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 307]
          Length = 773

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ S L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVDQNPHC 569


>gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis]
 gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis]
          Length = 716

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 34/219 (15%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 225 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 282

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 283 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDAI 328

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  E   K
Sbjct: 329 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLDK 374

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
            +    +    + V     +   ++M     +++  D V
Sbjct: 375 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV 413


>gi|254454634|ref|ZP_05068071.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 238]
 gi|198269040|gb|EDY93310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter
           antarcticus 238]
          Length = 773

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ S L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLESALKRVVFGQDDAIVALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVDQNPHC 569


>gi|7305635|ref|NP_038799.1| ATP-dependent zinc metalloprotease YME1L1 [Mus musculus]
 gi|46397096|sp|O88967|YMEL1_MOUSE RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=YME1-like protein 1
 gi|3600100|gb|AAC35558.1| ATP-dependent metalloprotease FtsH1 [Mus musculus]
 gi|13938024|gb|AAH07128.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|26347839|dbj|BAC37568.1| unnamed protein product [Mus musculus]
 gi|33413744|gb|AAN17724.1| metalloprotease [Mus musculus]
 gi|123232014|emb|CAM19538.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|123232763|emb|CAM25970.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
 gi|148676204|gb|EDL08151.1| YME1-like 1 (S. cerevisiae) [Mus musculus]
          Length = 715

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 386 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 432

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 433 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDKSVDPEIIARGTVGF 483


>gi|255589433|ref|XP_002534959.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
 gi|223524290|gb|EEF27422.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
           [Ricinus communis]
          Length = 109

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA 45
           +P+EI   LD+Y+IGQ  AK+ +A+A+ N ++R     
Sbjct: 65  TPQEICQILDQYVIGQVQAKKNLAVAVYNHYKRLGYNP 102


>gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
 gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21]
          Length = 625

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 30/177 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK A+      L +  R Q + A +     PK +LLVGP G GKT +++ +A
Sbjct: 167 KDVAGQDEAKEALQEIVSFLHDPSRYQAIGATM-----PKGVLLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA- 130
             A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++    A 
Sbjct: 222 GEAKVPFFSISGSEFIEM-FVGMGAARVRDLFKQAQEKAPCIVFIDEIDAIGKKRDNGAF 280

Query: 131 ---EER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
              +ER      +L  + G          A +N  EV  K L      D+ + +E+ 
Sbjct: 281 GSNDEREQTLNQLLSEMDGFDGSKGVIILAATNRPEVLDKALLRPGRFDRRVPVELP 337


>gi|220915955|ref|YP_002491259.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953809|gb|ACL64193.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 760

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++              E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK-----LSRSGLASPEKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LAR+ G  F++ ++T++ E            GYVG +   ++ D +     
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKTPY 559


>gi|197121251|ref|YP_002133202.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Anaeromyxobacter sp. K]
 gi|196171100|gb|ACG72073.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. K]
          Length = 760

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +V EL + I GQ  A  A+A A++              E    + L  GPTGVGKT +
Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK-----LSRSGLASPEKPIGSFLFSGPTGVGKTEL 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LAR+ G  F++ ++T++ E            GYVG +   ++ D +     
Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKTPY 559


>gi|332833800|ref|XP_507710.3| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Pan
           troglodytes]
          Length = 773

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 330 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 384

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 385 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 443

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 444 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 503

Query: 171 DTSSDISN 178
               D+  
Sbjct: 504 VPRPDVKG 511


>gi|47228004|emb|CAF97633.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 270 PVQMKNVTFEHVKGVEEAKNELQEVVEFLKNPQKFTALGGKL-----PKGVLLVGPPGTG 324

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 325 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 383

Query: 123 REQ 125
             +
Sbjct: 384 GGK 386


>gi|126725796|ref|ZP_01741638.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2150]
 gi|126705000|gb|EBA04091.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Rhodobacterales bacterium HTCC2150]
          Length = 775

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ DA  A++ A++              E    N L  GPTGVGKT +
Sbjct: 462 RDLEGSLKRVVFGQDDAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 571


>gi|103485664|ref|YP_615225.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98975741|gb|ABF51892.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 779

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + ++L R + GQ  A   ++ A++              E    N L  GPTGVGKT +++
Sbjct: 459 LETDLKRVVFGQNTAIEVLSSAIK-----LSRAGLRDPEKPIGNYLFSGPTGVGKTEVAK 513

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G P  + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 514 QLASIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIDQNPHC 566


>gi|94986632|ref|YP_594565.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730881|emb|CAJ54244.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00]
          Length = 635

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 107/280 (38%), Gaps = 37/280 (13%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++     L N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 154 EDVAGVDEAKEELSEVVDFLSNPRKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQ----- 125
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V  Q     
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFIQGKKNAPCLIFIDEIDAVGRQRGAGL 266

Query: 126 --ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                  E+ +   LV              A +N  +V    L      D+++ +   D 
Sbjct: 267 GGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPTPDV 326

Query: 173 SSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM- 230
              +   ++    +    +++ E+ ++         +   V +   +  RD+ + LIDM 
Sbjct: 327 KGRLKILEVHTRRTPLDKDVNLEVIARGTPGFSGAALENLVNEAALQAARDDKN-LIDMK 385

Query: 231 --DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
             +      +   E   ++  DE  KI A   G    V+R
Sbjct: 386 DFEYAKDKVLMGKERRSLILSDEEKKITAYHEGGHALVAR 425


>gi|260753078|ref|YP_003225971.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258552441|gb|ACV75387.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 773

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A + +A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 457 LETDLKRVVFGQDKAIKTLASAIK------LSRAGLREMHKPIGSYLFSGPTGVGKTEVA 510

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA L G P  + +++++ E            GYVG +   ++ D ++   + 
Sbjct: 511 RQLASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIEQNPHS 564


>gi|164687436|ref|ZP_02211464.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
 gi|164603210|gb|EDQ96675.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM
           16795]
          Length = 666

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK A+      L N  + +++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 173 DVAGQDEAKEALTEIVDFLHNPKKYEEIGATM-----PKGALLVGPPGTGKTLLAKAVAG 227

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 228 EAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 261


>gi|73948849|ref|XP_535172.2| PREDICTED: similar to YME1-like 1 isoform 3 [Canis familiaris]
          Length = 804

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 361 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 415

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 416 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 474

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 475 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 534

Query: 171 DTSSDISN 178
               D+  
Sbjct: 535 VPRPDVKG 542


>gi|56551301|ref|YP_162140.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760955|ref|ZP_04759044.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|56542875|gb|AAV89029.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241374574|gb|EER64035.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 773

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A + +A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 457 LETDLKRVVFGQDKAIKTLASAIK------LSRAGLREMHKPIGSYLFSGPTGVGKTEVA 510

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA L G P  + +++++ E            GYVG +   ++ D ++   + 
Sbjct: 511 RQLASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIEQNPHS 564


>gi|147902655|ref|NP_001082983.1| ATP-dependent metalloprotease YME1L1 [Danio rerio]
 gi|141796357|gb|AAI39530.1| Zgc:162158 protein [Danio rerio]
          Length = 722

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 45/287 (15%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   LRN  +   L   L     PK ILLVGP G G
Sbjct: 279 PVQMKNVTFEHVKGVEEAKNELQEVVEFLRNPQKFTVLGGKL-----PKGILLVGPPGTG 333

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 334 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKGNAPCVIFIDELDSV 392

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI- 181
             +       RI            +R+   + L + +       + +   ++     D  
Sbjct: 393 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNA 440

Query: 182 ---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE---------LMRDESDRLID 229
              PG   + +              +    ++ V                   E + L++
Sbjct: 441 LIRPGRFDMQVTVPRPDVKGRTEILKWYLKKIKVDSAVEAEVIARGTVGFSGAELENLVN 500

Query: 230 MDTVHRDSIQMVENYGIVFLDEF----DKIVARDSGNGIGVSREGVQ 272
              +       V+   +V + E     DKI+         + +   +
Sbjct: 501 QAALKA----AVDGKDMVTMKELEFAKDKILMGPERRSAEIDKRNKE 543


>gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
 gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205]
          Length = 695

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 31/178 (17%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK   + +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 199 KDVAGQEGAKQEVKEIVDFLKNPQKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  + R   + +  I+     D V R ++   A
Sbjct: 254 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARSKNPA 312

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               +ER      +L  + G    S        N  ++    L      D+EI +++ 
Sbjct: 313 MGGNDERENTLNALLTEMDGFGTNSGVIILAATNRVDMLDSALLRAGRFDREIHVDLP 370


>gi|149634678|ref|XP_001506440.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 1
           [Ornithorhynchus anatinus]
          Length = 766

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 323 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 377

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 378 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 436

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 437 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 496

Query: 171 DTSSDISN 178
               D+  
Sbjct: 497 VPRPDVKG 504


>gi|330814166|ref|YP_004358405.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487261|gb|AEA81666.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 756

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           ++I   L R I GQ  A  A+A +++                   N L  GPTGVGKT +
Sbjct: 452 KDIEKNLKRIIYGQDHAIEALASSIK-----LSRSGLRDSNKTIGNYLFSGPTGVGKTEL 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +++LA+  G   I+ ++++++E            GYVG +    + +LV+   +
Sbjct: 507 AKQLAKTLGVELIRFDMSEYSERHTISKLIGAPPGYVGFDQGGQLSELVEKNPH 560


>gi|326386213|ref|ZP_08207837.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209438|gb|EGD60231.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 784

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R + GQ  A   +A A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 463 LERDLKRMVFGQDKAIEVLASAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTEVA 516

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R LA + G P  + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 517 RSLANIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHC 570


>gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 653

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AKR +      L+N  R QQL A +     P+ +LLVGP G GKT +++ +A  
Sbjct: 180 VAGAEEAKRELTEVVDFLKNPERYQQLGAKI-----PRGVLLVGPPGTGKTLLAKAVAGE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 235 AGVPFFSTSASEFVEL-FVGVGASRV-RDLFNQA 266


>gi|126734140|ref|ZP_01749887.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
 gi|126717006|gb|EBA13870.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter sp. CCS2]
          Length = 759

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 444 KDLEKSLKRVVFGQDTAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 498

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 499 AKQLADTLGVELMRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNPHC 553


>gi|75764376|ref|ZP_00743893.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488135|gb|EAO51834.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 85

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KT 411
           M+ + + L+F E ++  +A  A+   +     GAR L++++E ++ D+ F     ++ + 
Sbjct: 1   MELDDVELEFEEGALIEIAKKAIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEK 55

Query: 412 VVIDAEYV 419
            ++  E V
Sbjct: 56  CILTKETV 63


>gi|293630868|gb|ACB29725.3| FtsH4 protein [Triticum monococcum subsp. aegilopoides]
 gi|293630870|gb|ACU00615.2| FtsH4 protein [Triticum monococcum subsp. monococcum]
          Length = 706

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 34/227 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 221 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 278

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 279 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDAI 324

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  +   K
Sbjct: 325 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNDGIIVI--------AATNFPQSLDK 370

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +    +    + V     +   +++     +++  D V   +I   
Sbjct: 371 ALVRPGRFDRHIVVPNPDVEGRRQILETHMSKVLKADDVDLMTIARG 417


>gi|218779932|ref|YP_002431250.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761316|gb|ACL03782.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfatibacillum alkenivorans AK-01]
          Length = 744

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 19/147 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S+L + + GQ +A + VA A+    +R +       E    + L  GPTGVGKT +++
Sbjct: 450 LESDLKKMVFGQDEAVQTVATAI----KRSR-AGLASQERPVGSFLFTGPTGVGKTEVAK 504

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA+  G  F++ +++++ E            GYVG +   ++ D V    + V     D
Sbjct: 505 QLAQTLGIAFLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDAVRRTPHCVL--LLD 562

Query: 121 EVREQASINAEERILDALVGKTATSNT 147
           E+ E+A  +    +L  +   T T N 
Sbjct: 563 EI-EKAHEDIFNVLLQVMDHATLTDNN 588


>gi|114328415|ref|YP_745572.1| ATP-dependent Clp protease ATP-binding subunit clpA [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316589|gb|ABI62649.1| ATP-dependent clp protease ATP-binding subunit clpA [Granulibacter
           bethesdensis CGDNIH1]
          Length = 851

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A++ A++              E    N L  GPTGVGKT
Sbjct: 529 TLRTLERDLKAMVFGQDKAIEALSAAIK-----LSRAGLRDAEKPIGNYLFSGPTGVGKT 583

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LA   G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 584 EVARQLATTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 639


>gi|327274727|ref|XP_003222128.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Anolis carolinensis]
          Length = 723

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 280 PIQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 334

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 335 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 393

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 394 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 453

Query: 171 DTSSDISN 178
               D+  
Sbjct: 454 VPRPDVKG 461


>gi|126341224|ref|XP_001367208.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 2
           [Monodelphis domestica]
          Length = 772

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 329 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 383

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 384 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 442

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 443 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 502

Query: 171 DTSSDISN 178
               D+  
Sbjct: 503 VPRPDVKG 510


>gi|84500106|ref|ZP_00998372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
 gi|84392040|gb|EAQ04308.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola
           batsensis HTCC2597]
          Length = 776

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  +++ A++              E    N L  GPTGVGKT +
Sbjct: 463 KDLEQTLKRVVFGQDLAIESLSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 AKQLADSLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 572


>gi|163815350|ref|ZP_02206725.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759]
 gi|158449324|gb|EDP26319.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759]
          Length = 674

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 24/249 (9%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK ++      L N  R  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 231 DVAGEDEAKESLTEMVDFLHNPKRYLEIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 285

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  + F E+ YVG    ++       A         DE+             
Sbjct: 286 EANVPFFSMSGSSFVEM-YVGVGASRVRDLFKQAADMAPCIIFIDEIDAIGQSR------ 338

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVGILN 191
           D++ G    S   +   + L + +  D    I +   ++     D     PG     ++ 
Sbjct: 339 DSVRG--GDSEREQTLNQLLAEMDGFDTSKGIVILAATNRPETLDKALLRPGRFDRRVIV 396

Query: 192 LSELFSKVMGSGRKKKIRMSVQKC---YPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                   + + +     + + +        +        D+  +  ++       G   
Sbjct: 397 EKPDLQGRIDTLKVHSRNVKMDESVDLRELALATAGAVGADLANIINEAALTAVRAGRTM 456

Query: 249 LDEFDKIVA 257
           + + D I A
Sbjct: 457 VSQADLIGA 465


>gi|301784304|ref|XP_002927570.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Ailuropoda
           melanoleuca]
          Length = 715

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|108563745|ref|YP_628061.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1]
 gi|107837518|gb|ABF85387.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1]
          Length = 136

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP 53
           P+E+ + LD Y+IGQ+ AK+  ++A+ N ++R      L+++   
Sbjct: 84  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKNKTTK 128


>gi|154174002|ref|YP_001407724.1| cell division protein FtsH [Campylobacter curvus 525.92]
 gi|112803610|gb|EAU00954.1| cell division protein FtsH [Campylobacter curvus 525.92]
          Length = 648

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 105/281 (37%), Gaps = 37/281 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  V      L++  +   L A +     PK ILLVGP G GKT ++R +A
Sbjct: 176 DDVAGVEEAKEEVQEIVDYLKSPDKYLNLGAKI-----PKGILLVGPPGTGKTLLARAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A          +    A +  +E  
Sbjct: 231 GEADVPFFSMSASSFIEM-FVGVGASRV-RDLFENA----------KKEAPAIVFIDE-- 276

Query: 135 LDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +DA+                +   + L + +  D +    +   +++            G
Sbjct: 277 IDAIGKSRNSGPMGGNDEREQTLNQLLSEMDGFDADKSPVIVIAATNRPEILDAALLRPG 336

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCY--PELMRDESDRLI------DMDTVHRDSIQM 240
             +   L  K    GR   +++ ++      ++  +E  RL       D++ +  ++  +
Sbjct: 337 RFDRQVLVDKPDFKGRCDILKVHMKDVKIGKDVSLEEIGRLTTGLAGADLENIINEAALL 396

Query: 241 VENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280
                  F+++ D +     S  G+      V      +V 
Sbjct: 397 AGRKSKPFVEQADLVEAVERSIAGLEKKSRRVNPKEKKIVT 437


>gi|71420458|ref|XP_811493.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70876163|gb|EAN89642.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV-RELFRQA 349


>gi|87198092|ref|YP_495349.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133773|gb|ABD24515.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM
           12444]
          Length = 792

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R + GQ  A   ++ A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 464 LERDLKRLVFGQDKAIEVLSSAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R LA++ G P  + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 518 RSLAQIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHC 571


>gi|14248493|gb|AAK57555.1|AF151782_1 ATP-dependent metalloprotease FtsH1 homolog [Homo sapiens]
          Length = 773

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 330 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 384

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 385 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 443

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 444 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 503

Query: 171 DTSSDISN 178
               D+  
Sbjct: 504 VPRPDVKG 511


>gi|253721988|gb|ACT34058.1| FtsH4 [Aegilops tauschii]
          Length = 709

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 34/227 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 215 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 272

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 273 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDAI 318

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  +   K
Sbjct: 319 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNDGIIVI--------AATNFPQSLDK 364

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +    +    + V     +   +++     +++  D V   +I   
Sbjct: 365 ALVRPGRFDRHIVVPNPDVEGRRQILETHMSKVLKADDVDLMTIARG 411


>gi|75760425|ref|ZP_00740467.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74492074|gb|EAO55248.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 129

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL 47
            P EI   LD Y+IGQ  AK+A+A+A+ N ++R    + L
Sbjct: 88  KPVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSTSKL 127


>gi|163745694|ref|ZP_02153054.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161382512|gb|EDQ06921.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 773

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L R + GQ DA  A++ A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIK------LSRAGLREPDKPIGNYLFAGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 569


>gi|30468153|ref|NP_849040.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
 gi|14423723|sp|Q9TJ83|FTSH_CYAME RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=FtsHCP
 gi|6539506|dbj|BAA88165.1| FtsH (FtsHcp) [Cyanidioschyzon merolae]
 gi|30409253|dbj|BAC76202.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain
           10D]
          Length = 603

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVA--IA-LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +A  +A L+N  +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 154 DDVAGIEEAKEELAEVVAFLKNPSKFLAVGASI-----PKGVLLVGPPGTGKTLLAKAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  ++F E+ +VG     V  + +     A  +V     D V
Sbjct: 209 GEASVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKQNAPCLVFIDEIDAV 258


>gi|291401928|ref|XP_002717328.1| PREDICTED: YME1-like 1 [Oryctolagus cuniculus]
          Length = 715

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|71668170|ref|XP_821024.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70886390|gb|EAN99173.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV-RELFRQA 349


>gi|322822382|gb|EFZ28450.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 712

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  FNF  REI VS     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A
Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV-RELFRQA 349


>gi|21327685|ref|NP_647473.1| ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Homo sapiens]
 gi|46397258|sp|Q96TA2|YMEL1_HUMAN RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=Meg-4; AltName: Full=Presenilin-associated
           metalloprotease; Short=PAMP; AltName: Full=YME1-like
           protein 1
 gi|55957858|emb|CAC19650.2| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|55958290|emb|CAI16907.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|119606475|gb|EAW86069.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|119606478|gb|EAW86072.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 773

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 330 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 384

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 385 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 443

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 444 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 503

Query: 171 DTSSDISN 178
               D+  
Sbjct: 504 VPRPDVKG 511


>gi|327274725|ref|XP_003222127.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Anolis carolinensis]
          Length = 715

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PIQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 254

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 EDVAGVDEAKEDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 245


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 86/238 (36%), Gaps = 27/238 (11%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   LRN  +   L   L     PK +LLVGP G G
Sbjct: 278 PEEIHVTFDD-VKGVDEAKQELKDVVEFLRNPDKFSNLGGKL-----PKGVLLVGPPGTG 331

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  +V     D + 
Sbjct: 332 KTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVVFIDEIDSIG 391

Query: 124 EQASINA--------EERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI 167
            + + +           ++L  + G             N +E   + L      D E+ +
Sbjct: 392 SKRTNSVLHPYANQTINQLLTEMDGFHQNEGVIVLGATNRKEDLDQALLRPGRFDVEVTV 451

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
              D +       +  G  +      EL ++         +   V +       DE+D
Sbjct: 452 PRPDYTGRKEILGLYLGKVLAKEVDLELLARGTTGFTGADLESMVNQAALRAAIDEAD 509


>gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 613

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E     D  + G  +AK  + + + N  +       L     PK ILLVGP G GKT +
Sbjct: 149 KETKVTFDD-VAGVDEAKEEL-VEIINFLKNPVDYGRLGG-RAPKGILLVGPPGTGKTLL 205

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 206 ARAVAGEAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|55731422|emb|CAH92425.1| hypothetical protein [Pongo abelii]
          Length = 716

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 387 GGK-------RI-----KSPMHPYSRQTINQLLAEMDGF-KTNEGVIIIGATNFPEALDN 433

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 434 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDQSVDPEIIARGTVGF 484


>gi|121603307|ref|YP_980636.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans
           CJ2]
 gi|120592276|gb|ABM35715.1| membrane protease FtsH catalytic subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 618

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +A+  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 163 DVAGVDEARHELEEVV-DFLKHPQEYGRLGAHI-PKGVLLVGPPGTGKTLLAKAVAGEAG 220

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A  +       +      ++A  R   A 
Sbjct: 221 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARGMAPAIIFID-----ELDALGRARGAF 273

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G        +   + L + +  D  + + +   ++     D P     G  +   L  +
Sbjct: 274 PGLGGHDEKEQTLNQLLAEMDGFDASVGLIILAATNRPEILD-PALLRAGRFDRQVLVDR 332

Query: 199 VMGSGRKKKIRMSVQK 214
               GR   +++ V+K
Sbjct: 333 PDRKGRTDILKVHVRK 348


>gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 617

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ++AK ++      L++  +  ++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 167 RDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQM-----PKGALLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VGR   ++ RDL   A
Sbjct: 222 GEANVPFFSISGSEFVEM-FVGRGAARV-RDLFKQA 255


>gi|46397076|sp|Q925S8|YMEL1_RAT RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName:
           Full=ATP-dependent metalloprotease FtsH1; AltName:
           Full=Meg-4; AltName: Full=YME1-like protein 1
 gi|14248497|gb|AAK57557.1|AF151784_1 ATP-dependent metalloprotease FtsH1 homolog [Rattus norvegicus]
          Length = 715

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 386 GGK-------RI-----EFPMHPYSRQTIIQLLAEMDGF-KPNEGVIIIGATNFPEALDN 432

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 433 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDKSVDPEIIARGTVGF 483


>gi|296533023|ref|ZP_06895671.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas
           cervicalis ATCC 49957]
 gi|296266652|gb|EFH12629.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas
           cervicalis ATCC 49957]
          Length = 790

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A++ A++              E    N L  GPTGVGKT
Sbjct: 463 TLRNLERDLKAMVFGQDQAIDALSAAIK-----LSRAGLRDPEKPIGNYLFSGPTGVGKT 517

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 518 EVAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDSIDQHPH 573


>gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
 gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759]
          Length = 629

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +A  +    N  + +++ A +     PK ILLVGP G GKT +++ +A 
Sbjct: 192 DVAGEDEAKENLAEIVEYLHNPGKYKEIGASM-----PKGILLVGPPGTGKTMLAKAVAG 246

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 247 EANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFQQA 279


>gi|309790421|ref|ZP_07684983.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227534|gb|EFO81200.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 642

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 35/249 (14%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK+    +   L+   +   L A +     P+ +L+VGP G GKT +SR +A 
Sbjct: 169 DVAGQEEAKQDLTEIVEFLKFPDKFAALGARI-----PRGVLMVGPPGTGKTLLSRAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---- 126
            AG PF  +  ++F E+ +VG    ++ RDL D     A  I+     D V R++     
Sbjct: 224 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKRNAPCIIFIDEIDAVGRQRGAGLG 281

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      +IL  + G          A +N  +V    L      D+++ ++  D  
Sbjct: 282 GSHDEREQTLNQILVEMDGFDTNTNVIVVAATNRPDVLDPALIRPGRFDRQVVLDAPDVR 341

Query: 174 SDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             +    +         +++ E+ +++        +  +V +    L    S + I M  
Sbjct: 342 GRMDILKVHVKGKPLSEDVNLEVIARLTPGFSGADLMNAVNEAA-ILAARRSKKRIGMSE 400

Query: 233 VHRDSIQMV 241
           + +DSI+ V
Sbjct: 401 L-QDSIERV 408


>gi|255264039|ref|ZP_05343381.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium
           sp. R2A62]
 gi|255106374|gb|EET49048.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium
           sp. R2A62]
          Length = 774

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 459 RDLEKSLKRVVFGQDPAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNPHC 568


>gi|219853875|ref|YP_002470997.1| hypothetical protein CKR_0532 [Clostridium kluyveri NBRC 12016]
 gi|219567599|dbj|BAH05583.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 617

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++AK ++   +    N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 173 EDVAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 228 GEAKVPFFSISGSAFVEM-FVGMGAARV-RDLFQQA 261


>gi|153953240|ref|YP_001394005.1| FtsH2 [Clostridium kluyveri DSM 555]
 gi|146346121|gb|EDK32657.1| FtsH2 [Clostridium kluyveri DSM 555]
          Length = 609

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++AK ++   +    N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 220 GEAKVPFFSISGSAFVEM-FVGMGAARV-RDLFQQA 253


>gi|149194984|ref|ZP_01872077.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
 gi|149134905|gb|EDM23388.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2]
          Length = 647

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 31/267 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L+N  R   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 172 DDVAGNDEAKEEVKEIVDFLKNPDRYIDLGAKI-----PKGVLLVGPPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEER 133
             A  PF  V  + F E+ +VG    ++ RDL + A          DE+       A   
Sbjct: 227 GEADVPFFAVSGSSFIEM-FVGVGAARV-RDLFNQAKKEAPSIIFIDEIDAIGKSRA--- 281

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
              A           +   + L + +  D   +  +   +++      P     G  +  
Sbjct: 282 ---AGGPMGGNDEREQTLNQLLAEMDGFDS-NEPVIVLAATNRPEVLDPALLRPGRFDRQ 337

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
            L  K    GR + +++ ++K         + + +D++ + R +  +        ++E  
Sbjct: 338 VLVDKPDFKGRVEILKVHIKKIK-------AGKDVDLEEIARMTAGLAGADLANIVNEAA 390

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVE 280
            +  R +       +E  Q D +  VE
Sbjct: 391 LLAGRKNK------KEVNQEDFVEAVE 411


>gi|332833796|ref|XP_003312540.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Pan
           troglodytes]
          Length = 716

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 387 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 446

Query: 171 DTSSDISN 178
               D+  
Sbjct: 447 VPRPDVKG 454


>gi|197117402|ref|YP_002137829.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197086762|gb|ACH38033.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
          Length = 616

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 37/271 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   R V   L+   + QQ+        +PK +LLVGP G GKT ++R +A 
Sbjct: 176 DVAGMEEAKQELREVVEYLKEPKKFQQVGGK-----VPKGVLLVGPPGTGKTLLARAVAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL   A   +      +      ++A  R  
Sbjct: 231 EAGVPFFSISASAFIEM-FVGVGASRV-RDLFATARKSLPSIIFID-----ELDAVGRSR 283

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVGILN 191
            A  G        +   + L + +  D   ++ V   ++     D     PG     ++ 
Sbjct: 284 GAGFGGGHDER-EQTLNQLLSEMDGFDPHTELVVISATNRPDVLDPALLRPGRFDRTVVI 342

Query: 192 LSELFSKVMGSGRKKKIRMS---------VQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
               +       R    ++          + K  P +   + + L++   +    +   E
Sbjct: 343 ERPDWRDREKILRVHTKKIPLAADVDLGVIAKGTPGMTGADLEGLVNEAAI----LTARE 398

Query: 243 NYGIVFLDEF----DKIVARDSGNGIGVSRE 269
           N  +V LDE     DK++     + +    E
Sbjct: 399 NKRVVGLDELERAKDKLLMGGERHMVISDEE 429


>gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
 gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
          Length = 645

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 106/275 (38%), Gaps = 41/275 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK A+      L    +   + A +     PK  LLVGP G GKT +++ +A
Sbjct: 163 DDVAGQDEAKEALTEIVDFLHEPAKYTAIGAKM-----PKGALLVGPPGTGKTLLAKAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ +VG    ++ RDL   A            +E+A        
Sbjct: 218 GEAGVPFFSISGSEFVEM-FVGMGASRV-RDLFKQA------------KEKAPCIVFIDE 263

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+             +K+       + E +  +    S++  F+   G  +    N  
Sbjct: 264 IDAIG------------KKRDGAFGGGNDEREQTLNQLLSEMDGFENGIGIVMLAATNRP 311

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
           +   K +    +   R+ V+    K    +++  +  +   + +  +  Q+         
Sbjct: 312 DSLDKALLRPGRFDRRIPVELPDLKGRESILKVHAKDVKKSEEIDYN--QVARATSGASG 369

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            E   IV   +   + + REG++++ L     + +
Sbjct: 370 AELANIVNEAALRAVRMKREGIKQEDLEESVETVI 404


>gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 349

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 11  EIVSELD-RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           EIV ++    ++GQ++AK+ V + L    +  Q P        PKN+L  GP G GKT  
Sbjct: 94  EIVKDVKIEDVVGQEEAKKKVRVIL----KYLQNPEKFGK-WAPKNVLFYGPPGTGKTMT 148

Query: 70  SRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           ++ LA  A  PFI V+ TK     +G   R + ++      VA  IV     D +
Sbjct: 149 AKALANEANVPFISVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSI 203


>gi|255539168|ref|XP_002510649.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223551350|gb|EEF52836.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 692

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 39/269 (14%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 266 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 320

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV-REQA---- 126
            AG PF     ++F E+ +VG    ++ RDL D     A  IV     D V R++     
Sbjct: 321 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFDKAKAKAPCIVFIDEIDAVGRQRGAGLG 378

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G +  S        N  +V    L      D+++ ++  D +
Sbjct: 379 GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVA 438

Query: 174 SDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             +    +   G ++      E  S+         ++  + +    L      + I  D 
Sbjct: 439 GRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDE 497

Query: 233 VHRDSIQMV----ENYGIVFLDEFDKIVA 257
           +  D+++ +    E    V  DE  K+VA
Sbjct: 498 IS-DALERIIAGPEKKNAVVSDEKKKLVA 525


>gi|260429034|ref|ZP_05783011.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella
           sp. SE45]
 gi|260419657|gb|EEX12910.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella
           sp. SE45]
          Length = 776

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 KDLEKSLKRVVFGQDPAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +    + D VD   + 
Sbjct: 518 AKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGQLTDGVDQHPHC 572


>gi|7657689|ref|NP_055078.1| ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Homo sapiens]
 gi|5689742|emb|CAB51858.1| ATP-dependent metalloprotease YME1L [Homo sapiens]
 gi|18645121|gb|AAH24032.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|23270684|gb|AAH23507.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|37182091|gb|AAQ88848.1| YME1L1 [Homo sapiens]
 gi|55957857|emb|CAI12217.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|55958289|emb|CAI16906.1| YME1-like 1 (S. cerevisiae) [Homo sapiens]
 gi|119606474|gb|EAW86068.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|119606476|gb|EAW86070.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|168275762|dbj|BAG10601.1| ATP-dependent metalloprotease YME1L1 [synthetic construct]
          Length = 716

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 387 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 446

Query: 171 DTSSDISN 178
               D+  
Sbjct: 447 VPRPDVKG 454


>gi|83593444|ref|YP_427196.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576358|gb|ABC22909.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 779

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +  +L   + GQ  A  A+A A++         A LR+   P  N L  GPTGVGKT 
Sbjct: 457 KSLERDLKTMVFGQDQAIEALASAIK------LARAGLREPTKPIGNYLFSGPTGVGKTE 510

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++R+LAR+ G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 511 VARQLARILGIELVRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAVDQQPHC 566


>gi|296081650|emb|CBI20655.3| unnamed protein product [Vitis vinifera]
          Length = 1053

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 34/220 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  A
Sbjct: 221 NDVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 278

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA
Sbjct: 279 EVPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDA 324

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + G      +R    ++     ++   ++++    +  I              N  E   
Sbjct: 325 IGG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLD 370

Query: 198 KVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
           K +    +    + V     +   ++M     +++  D V
Sbjct: 371 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKGDDV 410


>gi|156120349|ref|NP_001095320.1| ATP-dependent metalloprotease YME1L1 [Bos taurus]
 gi|151557121|gb|AAI50072.1| YME1L1 protein [Bos taurus]
 gi|296481444|gb|DAA23559.1| YME1-like 1 [Bos taurus]
          Length = 717

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|319764601|ref|YP_004128538.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans
           BC]
 gi|317119162|gb|ADV01651.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           BC]
          Length = 626

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +  ++    +  + P D       MPK ILLVGP G GKT ++R +A 
Sbjct: 175 DDVAGVDEAKAELRESV----KFLRNPKDYGRLGAHMPKGILLVGPPGTGKTLLARAMAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 231 EAGVPFFSITGSEFVEM-FVGVGAARV-RDLFEQA 263


>gi|254574390|ref|XP_002494304.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia pastoris GS115]
 gi|238034103|emb|CAY72125.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia pastoris GS115]
          Length = 710

 Score = 71.5 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++I  +  + + G  +AK  +   +   +N  + ++L A +     P+  +L GP G GK
Sbjct: 267 KDIKVKF-KDVAGCDEAKEEIMEFVQFLKNPKKYEKLGAKI-----PRGAILSGPPGTGK 320

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++  A  AG PF+ V  ++F E+ +VG    ++ RDL   A  +       +     
Sbjct: 321 TLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFQQARKMAPSIIFVD----- 373

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----P 182
            I+A  R                   + L + +  D    + V   ++     D     P
Sbjct: 374 EIDAIGRERSKSGSMGGNDEKEATLNQLLVEMDGFDSSDHVVVLAGTNRADVLDKALLRP 433

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           G     I              +     + + +    L  + + +L
Sbjct: 434 GRFDRHISIDRPDIEGRKDIYKVHLRHIKLAEA---LTDEFAGKL 475


>gi|158256020|dbj|BAF83981.1| unnamed protein product [Homo sapiens]
          Length = 716

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 387 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 446

Query: 171 DTSSDISN 178
               D+  
Sbjct: 447 VPRPDVKG 454


>gi|328683465|ref|NP_001126430.1| ATP-dependent metalloprotease YME1L1 [Pongo abelii]
          Length = 716

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 387 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KTNEGVIIIGATNFPEALDN 433

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D+ +D + + R ++  
Sbjct: 434 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLNKIKFDQSVDPEIIARGTVGF 484


>gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 453

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 111/294 (37%), Gaps = 47/294 (15%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 159 EDVAGVDEAKEDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQASIN 129
             AG PF  +  + F E+ +VG    ++ RD+ D     A  IV     D V R + +  
Sbjct: 214 GEAGVPFFSISGSHFVEM-FVGVGASRV-RDMFDQAKKNAPCIVFVDEIDAVGRHRGA-- 269

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                     G    ++ RE    +L       +  +  +   +++  +   P     G 
Sbjct: 270 ----------GLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALMRPGR 319

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID-----------MDTVHRDSI 238
            +           GR+K +++  +K    L  D   +++            M+ V+  ++
Sbjct: 320 FDRQIQVPNPDFIGREKILKVHARK--VPLAPDVDLKVVARGTPGFSGADLMNLVNEAAL 377

Query: 239 QMVENYGIV-----FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                   +     F D  DKI+       + ++ E  ++ L    EG     +
Sbjct: 378 LAARRSKRIVTNQEFEDSRDKIMMGAERRTLSMTEE--EKKLTAYHEGGHALVQ 429


>gi|219667350|ref|YP_002457785.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219537610|gb|ACL19349.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 608

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIV-----SELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I       +    + GQ +AK A+      L +  R   + ADL     PK
Sbjct: 148 MTFGKSNAKIYVQAQTGKTFADVAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PK 202

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 203 GALLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 257


>gi|256082756|ref|XP_002577619.1| hsl and clp protease [Schistosoma mansoni]
 gi|238662944|emb|CAZ33857.1| hsl and clp protease, putative [Schistosoma mansoni]
          Length = 299

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL 47
            SP+EI   LDRY++GQ  AK+ +A+ +   + R Q    L
Sbjct: 148 LSPKEIHQYLDRYVVGQDKAKKILAVQVYAHYNRIQYNRSL 188


>gi|153003705|ref|YP_001378030.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027278|gb|ABS25046.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Anaeromyxobacter sp. Fw109-5]
          Length = 763

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL + I GQ  A  A+  A++              E    N L  GPTGVGKT +
Sbjct: 450 RNLEPELKKVIFGQNAAVEAIVSAIK-----LSRSGLGSPERPIGNFLFSGPTGVGKTEL 504

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LAR+ G  F++ ++T++ E            GYVG +   ++ D +     
Sbjct: 505 AKQLARILGVEFLRFDMTEYQEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKTPY 558


>gi|326679769|ref|XP_003201374.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Danio rerio]
          Length = 704

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   LRN  +   L   L     PK ILLVGP G G
Sbjct: 261 PVQMKNITFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKL-----PKGILLVGPPGTG 315

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF     ++F E+ +VG    +I R+L   A
Sbjct: 316 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI-RNLFKEA 358


>gi|292627733|ref|XP_002666729.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Danio rerio]
          Length = 721

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   LRN  +   L   L     PK ILLVGP G G
Sbjct: 278 PVQMKNITFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKL-----PKGILLVGPPGTG 332

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF     ++F E+ +VG    +I R+L   A
Sbjct: 333 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI-RNLFKEA 375


>gi|195494903|ref|XP_002095038.1| GE22168 [Drosophila yakuba]
 gi|194181139|gb|EDW94750.1| GE22168 [Drosophila yakuba]
          Length = 826

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 311 MQSTAKLTNPSEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 367 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 425

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 426 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 485

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 486 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTTLDKNELSRKM 527


>gi|194227083|ref|XP_001495983.2| PREDICTED: YME1-like 1 (S. cerevisiae) [Equus caballus]
          Length = 715

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|149634676|ref|XP_001506505.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 3
           [Ornithorhynchus anatinus]
          Length = 723

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 280 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 334

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 335 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 393

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 394 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 453

Query: 171 DTSSDISN 178
               D+  
Sbjct: 454 VPRPDVKG 461


>gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
 gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
          Length = 635

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 22/170 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + V   L    R +++ A L     P+  LLVGP G GKT +++ +A
Sbjct: 187 KDVAGQEEAKESLKEVVDFLEKPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VGR    V  + +   + A  IV     D + ++      
Sbjct: 242 GEAGVPFFSISGSEFVEM-FVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDG--- 297

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                   G +      +   + L + +  D    I V   ++   + D 
Sbjct: 298 -------GGFSGNDEREQTLNQLLTEMDGFDNHKGIVVLAATNRPDSLDP 340


>gi|42525986|ref|NP_971084.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|41816036|gb|AAS10965.1| cell division protein FtsH [Treponema denticola ATCC 35405]
 gi|325475667|gb|EGC78843.1| cell division protein FtsH [Treponema denticola F0402]
          Length = 658

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           V    + + G  +AK  +   + +  +  Q   ++  ++ P+ +LLVGP G GKT ++R 
Sbjct: 200 VETRFKDVAGVDEAKEELMEVV-DFLKYPQKYTEIGGKI-PRGVLLVGPPGTGKTLLARA 257

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A  AG PF ++  + F E+ +VG    ++ RDL   A            RE+A      
Sbjct: 258 VAGEAGVPFFRISGSDFVEM-FVGVGASRV-RDLFRQA------------REKAPCIIFI 303

Query: 133 RILDALVGKTATSNTREVFRKK 154
             LDA+      S +    R++
Sbjct: 304 DELDAIGKSRHNSYSSNDEREQ 325


>gi|255282855|ref|ZP_05347410.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255266629|gb|EET59834.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 641

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + GQ +AK ++   +   +N  + + + A       PK  LLVGP G GKT +++ +A
Sbjct: 203 RDVAGQDEAKESLEEMVDYLKNPEKYRAIGAQ-----QPKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  ++F E+ +VG    ++ RDL   A   
Sbjct: 258 GEAGVPFYHLTGSEFVEM-FVGVGASRV-RDLFQTAKKN 294


>gi|326499736|dbj|BAJ86179.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 707

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 34/227 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 221 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 278

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 279 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDAI 324

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  +   K
Sbjct: 325 GG------SRNPKDQQYVKMTLNQLLVELDGFKQNDGIIVI--------AATNFPQSLDK 370

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +    +    + V     +   +++     +++  D V   +I   
Sbjct: 371 ALVRPGRFDRHIVVPNPDVEGRRQILETHMSKVLKADDVDLMTIARG 417


>gi|83952816|ref|ZP_00961546.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           nubinhibens ISM]
 gi|83835951|gb|EAP75250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius
           nubinhibens ISM]
          Length = 750

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 437 KDLAASLKRVVFGQDTAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 491

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++L+   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 492 AKQLSMTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 546


>gi|89896820|ref|YP_520307.1| hypothetical protein DSY4074 [Desulfitobacterium hafniense Y51]
 gi|89336268|dbj|BAE85863.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 611

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIV-----SELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I       +    + GQ +AK A+      L +  R   + ADL     PK
Sbjct: 151 MTFGKSNAKIYVQAQTGKTFADVAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PK 205

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 206 GALLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 260


>gi|89053532|ref|YP_508983.1| ATPase AAA-2 [Jannaschia sp. CCS1]
 gi|88863081|gb|ABD53958.1| ATPase AAA-2 [Jannaschia sp. CCS1]
          Length = 785

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A+A +++              E    N L  GPTGVGKT +
Sbjct: 471 KDLEVSLKRVVFGQDKAIEALASSIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 525

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   I+ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 526 AKQLADTLGVELIRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 580


>gi|311265757|ref|XP_003130808.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Sus scrofa]
          Length = 739

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 296 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 350

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 351 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 409

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 410 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 469

Query: 171 DTSSDISN 178
               D+  
Sbjct: 470 VPRPDVKG 477


>gi|332240522|ref|XP_003269436.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1
           [Nomascus leucogenys]
          Length = 756

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 313 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 367

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 368 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 426

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 427 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 486

Query: 171 DTSSDISN 178
               D+  
Sbjct: 487 VPRPDVKG 494


>gi|297300679|ref|XP_002805638.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 1
           [Macaca mulatta]
 gi|297300683|ref|XP_002805640.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 3
           [Macaca mulatta]
 gi|67970978|dbj|BAE01831.1| unnamed protein product [Macaca fascicularis]
          Length = 717

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 274 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 328

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 329 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 387

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 388 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 447

Query: 171 DTSSDISN 178
               D+  
Sbjct: 448 VPRPDVKG 455


>gi|149634674|ref|XP_001506478.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 2
           [Ornithorhynchus anatinus]
          Length = 715

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
 gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
          Length = 635

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 22/169 (13%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + V   L    R +++ A L     P+  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQEEAKESLKEVVDFLEKPKRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VGR    V  + +   + A  IV     D + ++      
Sbjct: 240 GEAGVPFFSISGSEFVEM-FVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDG--- 295

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                   G +      +   + L + +  D +  I V   ++   + D
Sbjct: 296 -------GGFSGNDEREQTLNQLLTEMDGFDNQKGIVVLAATNRPDSLD 337


>gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
          Length = 695

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 117/319 (36%), Gaps = 40/319 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  +I  E         + GQ++AK ++      L    + +++ A     ++PK
Sbjct: 153 MNFGKSNAKIYMENKTGKTFADVAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPK 207

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAI 111
            +LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG     V  + +   + A 
Sbjct: 208 GVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGASKVRDLFKQAKEKAP 266

Query: 112 NIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREVFRK 153
            IV     D + ++                 ++L+ + G  AT         N  E+   
Sbjct: 267 CIVFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDP 326

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSV 212
            L      D+ + +E+ D         +          +  E  +K         +   V
Sbjct: 327 ALTRPGRFDRRVQVELPDLKGREDILKVHAKKIKREDEIDYEEIAKRTAGTSGADLANIV 386

Query: 213 QKCYPELMRDESDRL--IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270
            +     +R+   +L   D++      I   +    V  D+  KI+A        V+   
Sbjct: 387 NEGALRAVREGRKKLTQTDLEESIETVIAGAQKKNAVISDDQKKIIAYHEVGHALVA--A 444

Query: 271 VQRDLLPLVEGSSVSTKYG 289
           +Q    P+ + + V    G
Sbjct: 445 IQTQKTPVTKITIVPRTGG 463


>gi|159045479|ref|YP_001534273.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter
           shibae DFL 12]
 gi|157913239|gb|ABV94672.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter
           shibae DFL 12]
          Length = 775

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ +A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 462 KDLEVSLKRVVFGQDNAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++L+   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 AKQLSSTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|290770264|gb|ADD62019.1| putative protein [uncultured organism]
          Length = 720

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 198 KDVAGQDEAKESLTEIVDFLHNPDKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 252

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 253 GEANVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 286


>gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
 gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
          Length = 710

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 34/219 (15%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 224 DVKGVDEAKSELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 282 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAA----------KKRSPCIIFIDE--IDAI 327

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  E   K
Sbjct: 328 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLDK 373

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
            +    +    + V     +   +++     +++  D V
Sbjct: 374 ALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKSDDV 412


>gi|163737811|ref|ZP_02145228.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
 gi|161389337|gb|EDQ13689.1| ATP-dependent Clp protease ATP-binding subunit clpA [Phaeobacter
           gallaeciensis BS107]
          Length = 773

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLERSLKRVVFGQDAAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 104/298 (34%), Gaps = 39/298 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I S     + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 148 PEDI-SVTFEDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 201

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 202 KTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVG 261

Query: 124 EQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVAD 171
            + + +     A + I   L           V        R  L    +     D+EV  
Sbjct: 262 AKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGRFDVEVVV 321

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            + D +     G   +    LS++ SK +   +  +               + + +++  
Sbjct: 322 PTPDFT-----GRKEILTHYLSKILSKEINIDQLARGTTGFTGA-------DIENMVNQA 369

Query: 232 TVHRDSIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + R +I   E   +  L+   DK++            E     +    EG      Y
Sbjct: 370 AL-RAAIDGAETVTMKHLENARDKVLMGPERKSRLPDEEA--NKITAYHEGGHAIVAY 424


>gi|328353874|emb|CCA40271.1| AFG3 family protein [Pichia pastoris CBS 7435]
          Length = 749

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++I  +  + + G  +AK  +   +   +N  + ++L A +     P+  +L GP G GK
Sbjct: 267 KDIKVKF-KDVAGCDEAKEEIMEFVQFLKNPKKYEKLGAKI-----PRGAILSGPPGTGK 320

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T +++  A  AG PF+ V  ++F E+ +VG    ++ RDL   A  +       +     
Sbjct: 321 TLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFQQARKMAPSIIFVD----- 373

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----P 182
            I+A  R                   + L + +  D    + V   ++     D     P
Sbjct: 374 EIDAIGRERSKSGSMGGNDEKEATLNQLLVEMDGFDSSDHVVVLAGTNRADVLDKALLRP 433

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           G     I              +     + + +    L  + + +L
Sbjct: 434 GRFDRHISIDRPDIEGRKDIYKVHLRHIKLAEA---LTDEFAGKL 475


>gi|325270324|ref|ZP_08136929.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
 gi|324987268|gb|EGC19246.1| ATP-dependent metalloprotease FtsH [Prevotella multiformis DSM
           16608]
          Length = 676

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 31/191 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LL+GP G GKT +++ +A
Sbjct: 192 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLIGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  + R   + A  I+     D V R ++   A
Sbjct: 247 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFRQAKEKAPCIIFIDEIDAVGRARSKNPA 305

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D++I +++ D 
Sbjct: 306 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLPDL 365

Query: 173 SSDISNFDIPG 183
           +   + F +  
Sbjct: 366 TERKAIFQVHM 376


>gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
 gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010]
          Length = 707

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK     +   LRN  +  +L   +     P   LL+GP G GKT +++ +A
Sbjct: 196 KDVAGQEGAKQEVEEIVEFLRNPGKYTELGGKI-----PAGALLIGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +     + A  I+     D V
Sbjct: 251 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKAPCIIFIDEIDAV 300


>gi|225568885|ref|ZP_03777910.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM
           15053]
 gi|225162384|gb|EEG75003.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM
           15053]
          Length = 663

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  Q+ A L     PK  LLVGP G GKT +++ +A
Sbjct: 176 KDVAGQDEAKESLQEVVDFLHNPGKYTQIGAKL-----PKGALLVGPPGTGKTLLAKAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 231 GEAKVPFFSLTGSSFVEM-YVGVGASRV-RDLFKQA 264


>gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 575

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 36/276 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +     R  L        +P+ +LL GP G GKT +++ +A  A
Sbjct: 288 DDVQGVDEAKEELVEIV--SCLRGSLNYKKLGARLPRGVLLAGPPGTGKTLLAKAVAGEA 345

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
           G PF  V  ++F E+ +VGR   ++ RDL   A            +E A        LDA
Sbjct: 346 GIPFFSVSASEFVEM-FVGRGAARV-RDLFKEA------------KEAAPSIIFIDELDA 391

Query: 138 LVGKTATS---NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVGIL 190
           + G    S      +   + L + +  D ++ + V   ++     D     PG  S  + 
Sbjct: 392 VGGSRGRSFNDERDQTLNQLLTEMDGFDSDVKVIVMAATNRPKALDSALCRPGRFSRKVF 451

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD---RLI--DMDTVHRDSIQMVENYG 245
                             ++ +++    +    ++    L+  D+  +  ++  +    G
Sbjct: 452 VGVPDLEGRRKILAVHLRKVPLEEDSEIICDLVANVTPGLVGADLANIVNEAALLAARRG 511

Query: 246 IVFL---DEFDKIVARDSG-----NGIGVSREGVQR 273
              +   D  D I     G      G   +REG+ +
Sbjct: 512 GDIVAREDIMDAIEREKYGVNGRQKGPDSAREGLTK 547


>gi|288940240|ref|YP_003442480.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
 gi|288895612|gb|ADC61448.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G ++AK     +   LRN  +   L   +     P+ +L+VGP G GKT ++R +A
Sbjct: 155 RDVAGVEEAKEEVGELVDFLRNPQKFSNLGGRI-----PRGVLMVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 210 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 243


>gi|160878484|ref|YP_001557452.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|160427150|gb|ABX40713.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 681

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 180 KDVAGQEEAKESLTELVDFLHNPGKYTRIGAKL-----PKGALLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 235 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 268


>gi|302382576|ref|YP_003818399.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193204|gb|ADL00776.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 770

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           RE+ ++L+R + GQ  A   VA A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 459 RELQTDLNRAVFGQDAAIEQVASAMK------LARAGLRDPQKPIGSFLFAGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   +
Sbjct: 513 VAKQLASTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVDQHPH 567


>gi|218674234|ref|ZP_03523903.1| cell division metalloproteinase protein [Rhizobium etli GR56]
          Length = 252

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 149 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 203

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 204 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 240


>gi|332187792|ref|ZP_08389526.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas
           sp. S17]
 gi|332012142|gb|EGI54213.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas
           sp. S17]
          Length = 772

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A   ++ A++         A LRD   P  N L  GPTGVGKT ++
Sbjct: 459 LETDLKRVVFGQNAAIENLSSAIK------LSRAGLRDPDKPIGNYLFTGPTGVGKTEVA 512

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA + G P  + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 RQLATILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHS 566


>gi|255316772|gb|ACU01771.1| protease FtsH-like protein 4 [Brachypodium distachyon]
          Length = 589

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 34/227 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 98  DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 155

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 156 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDAI 201

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  +   K
Sbjct: 202 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNDGIIVI--------AATNFPQSLDK 247

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +    +    + V     +   +++     +++  D V   +I   
Sbjct: 248 ALVRPGRFDRHIVVPNPDVEGRRQILETHMSKVLKADDVDLMTIARG 294


>gi|296206357|ref|XP_002750180.1| PREDICTED: ATP-dependent metalloprotease YME1L1 isoform 1
           [Callithrix jacchus]
          Length = 716

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 387 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 446

Query: 171 DTSSDISN 178
               D+  
Sbjct: 447 VPRPDVKG 454


>gi|240147503|ref|ZP_04746104.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257200292|gb|EEU98576.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 511

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 195 KDVAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GEAKVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 283


>gi|312113350|ref|YP_004010946.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218479|gb|ADP69847.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
          Length = 626

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + N  +       L    +PK ILLVGP G+GKT ++R +A  A
Sbjct: 156 EDVAGADEAKGELMEIV-NFLKDPDHYGRLGA-RVPKGILLVGPPGIGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  ++F E+ +VG    ++ RDL + A  +
Sbjct: 214 GVPFFSISGSEFVEM-FVGVGAARV-RDLFEQARKM 247


>gi|238923099|ref|YP_002936612.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874771|gb|ACR74478.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 707

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  R   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A  +
Sbjct: 258 GEAGVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEAQKM 294


>gi|163742883|ref|ZP_02150267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
 gi|161383847|gb|EDQ08232.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Phaeobacter
           gallaeciensis 2.10]
          Length = 766

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 453 KDLERSLKRVVFGQDAAIDALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 508 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 562


>gi|291546955|emb|CBL20063.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5]
          Length = 712

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 240 GEAQVPFFSLSGSEFVEM-FVGVGASRV-RDLFEEAKKN 276


>gi|291523951|emb|CBK89538.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale DSM 17629]
          Length = 703

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  R   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A  +
Sbjct: 258 GEAGVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEAQKM 294


>gi|296084117|emb|CBI24505.3| unnamed protein product [Vitis vinifera]
          Length = 104

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 19/114 (16%)

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
           V   +++  +  GIV++DE DKI  +         VS EGVQ+ LL ++EG+  ++   S
Sbjct: 3   VAEFNVEAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVSASIVES 61

Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR--LILTDTE 342
            +      IA G         L+PE  GRFP+ V L +LN+       IL + E
Sbjct: 62  GD-----LIAYG---------LIPEFIGRFPISVSLSALNEDPLVTPQILGNPE 101


>gi|213622276|ref|ZP_03375059.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 147

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 40  LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 96

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 97  TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 138


>gi|311893429|dbj|BAJ25846.1| ATP-dependent zinc metalloprotease ThFtsH8 [Eutrema salsugineum]
          Length = 693

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 90/265 (33%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LL+GP G GKT +++ +A  A
Sbjct: 226 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLIGPPGTGKTLLAKAIAGEA 283

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ-------AS 127
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q        +
Sbjct: 284 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 342

Query: 128 INAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              E+ +   L G             A +N  ++    L      D+++ ++V D     
Sbjct: 343 DEREQTLNQLLTGMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 402

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 403 DILKVHSGNKKFENGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 447

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 448 RRGRTAISSKEIDDSIDRIVAGMEG 472


>gi|237746179|ref|ZP_04576659.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
 gi|229377530|gb|EEO27621.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein
           [Oxalobacter formigenes HOxBLS]
          Length = 655

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 30/216 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++I    D  + G  +AK  +      L++  +  +L   +     P  ILLVGP G GK
Sbjct: 156 KDIKVTFDD-VAGVDEAKEELQEVVGFLKDPEKYGRLGGRI-----PHGILLVGPPGTGK 209

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A  AG PF  +  ++F E+ +VG    ++ RDL + A            R+QA
Sbjct: 210 TLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAARV-RDLFEQA------------RKQA 255

Query: 127 SINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                   +DAL       G        +   + L + +  D +  + +   ++     D
Sbjct: 256 PAIIFIDEIDALGKARGAYGVGGHDEKEQTLNQLLAELDGFDSKSGLVLLGATNRPEILD 315

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            P     G  +   L  +   +GR + +R+ ++K  
Sbjct: 316 -PALLRAGRFDRQILVDRPDKAGRVQILRVHLKKIR 350


>gi|254294359|ref|YP_003060382.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hirschia
           baltica ATCC 49814]
 gi|254042890|gb|ACT59685.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hirschia
           baltica ATCC 49814]
          Length = 769

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + I ++L R + GQ DA  AV+ A++                   + L  GPTGVGKT +
Sbjct: 454 KSISADLKRVVYGQDDAIAAVSDAIK-----LARAGLREANKPIGSYLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 ARQLASILGVELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDGVDQHPHC 563



 Score = 36.8 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE + R    V    L +     ++       ILQ +  +    + +  T+ +   LA
Sbjct: 640 FTPEFRNRLDAIVPFSPLGEEVISRVVDK----FILQLEGQLSDRNVDIVLTDKARAWLA 695

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS----ASDLQEKTVVIDAEYVRLHIGDFP 427
           +   +      D GAR L  V++  ++             +   V ID +        F 
Sbjct: 696 ERGYD-----KDYGARPLSRVIQEHVKKPMAEELLFGKLKKGGVVTIDVDIKDTKKLAFI 750

Query: 428 SETD 431
            E D
Sbjct: 751 YEED 754


>gi|126341222|ref|XP_001367162.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 1
           [Monodelphis domestica]
          Length = 715

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 385

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 386 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 445

Query: 171 DTSSDISN 178
               D+  
Sbjct: 446 VPRPDVKG 453


>gi|310794449|gb|EFQ29910.1| ATP-dependent metallopeptidase HflB [Glomerella graminicola M1.001]
          Length = 763

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LRN  +   L   L     PK IL+VGP G GKT ++R +A 
Sbjct: 272 DVHGADEAKDELQELVDFLRNPDKFSTLGGKL-----PKGILMVGPPGTGKTLLARAVAG 326

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----------RDEVREQ 125
            AG PF  +  ++F E+ YVG   +++ RDL   A +                R   R+ 
Sbjct: 327 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFASAKSKSPAIIFIDELDAIGGRRNTRDA 384

Query: 126 A-SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           A       ++L  L G    S        N  E+  K L      D+ + + + D    I
Sbjct: 385 AYHKQTLNQLLTELDGFEQNSGVVIIAATNFPELLDKALTRPGRFDRHVTVPLPDVRGRI 444

Query: 177 SNF 179
              
Sbjct: 445 EIL 447


>gi|284989213|ref|YP_003407767.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM
           43160]
 gi|284062458|gb|ADB73396.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM
           43160]
          Length = 662

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 113/312 (36%), Gaps = 67/312 (21%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAIEELHEIKDFLANPVKFQAVGAKI-----PKGVLLFGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A          +    A I  +E  +
Sbjct: 222 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA----------KQNAPAIIFVDE--I 267

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLSE 194
           DA+             R +         E +  +     ++  FD+ GG  +    N  +
Sbjct: 268 DAVG------------RHRGAGMGGGHDEREQTLNQMLVEMDGFDVKGGVIMIAATNRPD 315

Query: 195 LFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDR-----LIDMDTVHR---------- 235
           +    +    +   +++V     +    ++   +        +D++TV R          
Sbjct: 316 ILDPALLRPGRFDRQIAVDRPDLEGRKRILEVHAKGKPLAPDVDLETVARRTPGFTGADL 375

Query: 236 ------DSIQMVENYGIVFLDE-----FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
                  ++    N G V  D+      D++VA        +S +  ++ +    EG   
Sbjct: 376 ANVLNEGALLTARNNGTVITDDLLEEAIDRVVAGPERKTRAMSEK--EKKVTAYHEGGHA 433

Query: 285 STKYGSINTDHI 296
              +   N D +
Sbjct: 434 LVAHALPNLDPV 445


>gi|332833798|ref|XP_003312541.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 2 [Pan
           troglodytes]
          Length = 683

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 240 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 294

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 295 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 353

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 354 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 413

Query: 171 DTSSDISN 178
               D+  
Sbjct: 414 VPRPDVKG 421


>gi|194872115|ref|XP_001972966.1| GG15828 [Drosophila erecta]
 gi|190654749|gb|EDV51992.1| GG15828 [Drosophila erecta]
          Length = 826

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 311 MQSTAKLTNPNEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 367 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 425

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 426 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 485

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 486 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTTLDKNELSRKM 527


>gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 662

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 107/293 (36%), Gaps = 45/293 (15%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 159 EDVAGVDEAKEDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFVDEIDAVGRHRGA--- 269

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 270 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALMRPGRF 320

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID-----------MDTVHRDSIQ 239
           +           GR+K +++  +K    L  D   +++            M+ V+  ++ 
Sbjct: 321 DRQIQVPNPDFIGREKILKVHARK--VPLAPDVDLKVVARGTPGFSGADLMNLVNEAALL 378

Query: 240 MVENYGIV-----FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
                  +     F D  DKI+       + ++ E  ++ L    EG     +
Sbjct: 379 AARRSKRIVTNQEFEDARDKIMMGAERRTLSMTEE--EKKLTAYHEGGHALVQ 429


>gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 618

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK     +   L N  +  ++ A     + PK  LLVGP G GKT +++ +A
Sbjct: 169 QDVAGEDEAKELLTEIVDFLHNPQKYTEIGA-----VCPKGALLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             A  PF  +  ++F E+ +VG      +RDL   A 
Sbjct: 224 GEANVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQAN 258


>gi|168001607|ref|XP_001753506.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695385|gb|EDQ81729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 688

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+   + + +  +R +    +   + PK +LLVGP G GKT +++ +A  A
Sbjct: 226 QDVAGVDEAKQDF-VEVVDFLKRPERFTSVGARI-PKGVLLVGPPGTGKTLLAKAIAGEA 283

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 284 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 342

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 343 DEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDAALLRPGRFDRQVTVDVPDVKGRT 402

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +         ++S     +   G                       L++   +   
Sbjct: 403 DILKVHASNKKFDDDVSLDIIAMRTPGFSGAD---------------LANLLNEAAILTG 447

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 448 RRGKTAISAKEIDDSIDRIVAGMEG 472


>gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum]
          Length = 729

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 8   SPREIVSE----LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           SP+E+  E        + G  +AK+ V   +   + R           +PK +LLVGP G
Sbjct: 235 SPQEVKPEDVTVTFDDVRGMDEAKKEVEEIV--SYLRDPDRYSRLGGRLPKGVLLVGPPG 292

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            GKT ++R +A  A  PF     ++F E  +G   R V  +       A  I+     D 
Sbjct: 293 TGKTLLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFERAKQRAPCIIFIDEIDS 352

Query: 122 VREQ 125
           V  +
Sbjct: 353 VGSK 356


>gi|213646997|ref|ZP_03377050.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 277

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|119606477|gb|EAW86071.1| YME1-like 1 (S. cerevisiae), isoform CRA_c [Homo sapiens]
 gi|194388630|dbj|BAG60283.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 240 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 294

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 295 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 353

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 354 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 413

Query: 171 DTSSDISN 178
               D+  
Sbjct: 414 VPRPDVKG 421


>gi|169606596|ref|XP_001796718.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15]
 gi|111065055|gb|EAT86175.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15]
          Length = 763

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  R  +L   L     PK +LL+GP G GKT ++R +A 
Sbjct: 292 DVHGCDEAKEELLDIVDFLKHPERYNKLGGRL-----PKGVLLIGPPGTGKTLLARAVAG 346

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ R+L   A            +  A +  +E  L
Sbjct: 347 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFQQA----------RTKAPAIVFIDE--L 392

Query: 136 DALVGKTAT---SNTREVFRKKLRDGEISDK 163
           DA+ GK  +   +  R+   + L D +  D+
Sbjct: 393 DAIGGKRKSRDANYHRQTLNQLLNDLDGFDQ 423


>gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
 gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK  ++  +    N  R +++ A +     PK ILLVGP G GKT +++ +A
Sbjct: 169 RDVAGEDEAKENLSEIVEYLHNPARYKEIGASM-----PKGILLVGPPGTGKTMLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 224 GEANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFQQA 257


>gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
 gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
          Length = 858

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 35/191 (18%)

Query: 19  YIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +       R+ R            P+ +LLVGP G GKT +++ +
Sbjct: 370 DVAGVDEAKEELEEIVEFLRSPERYARLGA-------RPPRGVLLVGPPGTGKTLLAKAV 422

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVRE------ 124
           A  A  PFI    ++F E+ YVG     V ++       A +IV     D V +      
Sbjct: 423 AGEASVPFISCSASEFVEL-YVGMGASRVRELFARAKKNAPSIVFIDEIDAVAKGRDGRL 481

Query: 125 -----QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                        ++L  L G  + S        N  +V    LR     D+ + +E  D
Sbjct: 482 RSVSNDEREQTLNQLLTELDGFESASTVIVIGATNRADVLDPALRRPGRFDRIVMVEPPD 541

Query: 172 TSSDISNFDIP 182
                   ++ 
Sbjct: 542 RQGREEILNVH 552


>gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
 gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
          Length = 857

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 35/191 (18%)

Query: 19  YIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +       R+ R            P+ +LLVGP G GKT +++ +
Sbjct: 369 DVAGVDEAKEELEEIVEFLRSPERYARLGA-------RPPRGVLLVGPPGTGKTLLAKAV 421

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVRE------ 124
           A  A  PFI    ++F E+ YVG     V ++       A +IV     D V +      
Sbjct: 422 AGEASVPFISCSASEFVEL-YVGMGASRVRELFARAKKNAPSIVFIDEIDAVAKGRDGRL 480

Query: 125 -----QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                        ++L  L G  + S        N  +V    LR     D+ + +E  D
Sbjct: 481 RSVSNDEREQTLNQLLTELDGFESASTVIVIGATNRADVLDPALRRPGRFDRIVMVEPPD 540

Query: 172 TSSDISNFDIP 182
                   ++ 
Sbjct: 541 RQGREEILNVH 551


>gi|312281735|dbj|BAJ33733.1| unnamed protein product [Thellungiella halophila]
          Length = 717

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 228 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 285

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 286 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAAKKC 318


>gi|91786625|ref|YP_547577.1| FtsH-2 peptidase [Polaromonas sp. JS666]
 gi|91695850|gb|ABE42679.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 609

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +A+  +   + +  R  Q    L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 161 DVAGVDEARHELEEVV-DFLRHPQEYGRLGAHI-PKGVLLVGPPGTGKTLLARAVAGEAG 218

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A      S    +     ++A  R   A 
Sbjct: 219 VPFFSISGSEFVEM-FVGGGAARV-RDLFEQA-----RSMAPAIIFIDELDALGRARGAF 271

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G        +   + L + +  D  + + +   ++     D P     G  +   L  +
Sbjct: 272 PGLGGHDEKEQTLNQLLSEMDGFDASVGLIILSATNRPEILD-PALLRAGRFDRQVLVDR 330

Query: 199 VMGSGRKKKIRMSVQK 214
               GR   +++ V+K
Sbjct: 331 PDRKGRTDILKVHVRK 346


>gi|313891687|ref|ZP_07825294.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E]
 gi|313119965|gb|EFR43150.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E]
          Length = 613

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +A     LRN  R   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 153 KDVAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 208 GEARVPFFSISGSDFVEM-FVGVGASRV-RDLFAQAKKN 244


>gi|226954271|ref|ZP_03824735.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244]
 gi|294650475|ref|ZP_06727834.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226834999|gb|EEH67382.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244]
 gi|292823618|gb|EFF82462.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 761

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKAPDKPVGSFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G  F++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 506 QLAKLLGVEFVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 558


>gi|30248910|ref|NP_840980.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
 gi|30138527|emb|CAD84817.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718]
          Length = 619

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G  +AK  +   + N  +  +  + L     PK ILLVGP G GKT ++R +A  AG 
Sbjct: 165 VAGVDEAKEELVEIV-NFLKNPKEYSRLGG-RAPKGILLVGPPGTGKTLLARAVAGEAGV 222

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 223 PFFSISGSEFVEM-FVGVGAARV-RDLFEQA 251


>gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
 gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
          Length = 690

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGQAGAKQEVEEIVEFLKNPKKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS 127
             AG PF  +  + F E+ +VG     V  + R   + A  I+     D V R +A 
Sbjct: 248 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARAK 303


>gi|295110697|emb|CBL24650.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 701

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 187 VAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 242 ANVPFFSLSGSEFVEM-FVGVGASRV-RDLFEEAKKN 276


>gi|255523432|ref|ZP_05390401.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296184714|ref|ZP_06853125.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255512890|gb|EET89161.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296050496|gb|EFG89919.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 613

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A 
Sbjct: 166 DVAGQEEAKESLIEIVDFLHNPKKYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 221 EAKVPFFSISGSAFVEM-FVGMGASRV-RDLFEQA 253


>gi|219849535|ref|YP_002463968.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
 gi|310943124|sp|B8G4Q6|FTSH_CHLAD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219543794|gb|ACL25532.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM
           9485]
          Length = 656

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + GQ++AK+ +A  +       + P         +P+ +L+VGP G GKT +SR +A  
Sbjct: 170 DVAGQEEAKQDLAEIV----EFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 226 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 257


>gi|28574878|ref|NP_730248.2| CG6512, isoform A [Drosophila melanogaster]
 gi|19527645|gb|AAL89937.1| SD01613p [Drosophila melanogaster]
 gi|28380489|gb|AAF49365.2| CG6512, isoform A [Drosophila melanogaster]
 gi|220947456|gb|ACL86271.1| CG6512-PA [synthetic construct]
          Length = 826

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 311 MQSTAKLTNPNEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 367 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 425

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 426 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 485

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 486 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKM 527


>gi|329122061|ref|ZP_08250669.1| cell division protein FtsH [Dialister micraerophilus DSM 19965]
 gi|327466868|gb|EGF12384.1| cell division protein FtsH [Dialister micraerophilus DSM 19965]
          Length = 613

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +A     LRN  R   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 153 KDVAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 208 GEARVPFFSISGSDFVEM-FVGVGASRV-RDLFAQAKKN 244


>gi|197302420|ref|ZP_03167475.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
 gi|197298318|gb|EDY32863.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC
           29176]
          Length = 700

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 235 QNVAGQDEAKESLQEVVDFLHNPEKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 289

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 290 GEAGVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 323


>gi|195591016|ref|XP_002085240.1| GD12422 [Drosophila simulans]
 gi|194197249|gb|EDX10825.1| GD12422 [Drosophila simulans]
          Length = 826

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 311 MQSTAKLTNPNEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 367 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 425

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 426 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 485

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 486 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKM 527


>gi|158522492|ref|YP_001530362.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus
           oleovorans Hxd3]
 gi|158511318|gb|ABW68285.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus
           oleovorans Hxd3]
          Length = 751

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + + GQ +A   +  A+    +R +     + E    + L  GPTGVGKT I+R
Sbjct: 450 LERELKQVVFGQDEAIAFLTTAI----KRSR-AGLGKPEKPIGSFLFTGPTGVGKTEIAR 504

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++A + G  FI+ +++++ E            GYVG +   ++ D +      
Sbjct: 505 QMAAILGVAFIRFDMSEYMEKHAVARLIGAPPGYVGFDQAGLLTDRIRKHPYS 557


>gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium]
 gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium]
          Length = 614

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 35/270 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +   +   ++  +   + A      +PK +LLVGP G GKT +++ +A
Sbjct: 171 EDVAGIEEAKEELQEIVAFLKDSRKFTNVGA-----TIPKGVLLVGPPGTGKTLLAKAIA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A APF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q      
Sbjct: 226 GEASAPFFSISGSEFVEM-FVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQ------ 278

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI--PGGASVGI 189
            R +    G      T      ++ DG   D  + +  A    D+ +  +  PG     I
Sbjct: 279 -RGVGIGGGNDEREQTLNQLLTEM-DGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQI 336

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR-----------LIDMDTVHRDSI 238
           +      +  +   +    +  + K    L+   + R           L++   +     
Sbjct: 337 MVSLPNINGRLAILKVHSKKKKIHK--DVLLEVIARRTPGFSGADLANLLNEAAILTVRR 394

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
             VE       D  DKI+A   G+ +  SR
Sbjct: 395 GKVEITMKEIEDSIDKIIAGLEGSPLADSR 424


>gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays]
 gi|223947901|gb|ACN28034.1| unknown [Zea mays]
          Length = 710

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 34/219 (15%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R  +        +PK +LLVGP G GKT ++R +A  AG
Sbjct: 224 DVKGVDEAKSELEEIV--HYLRDPMRFTCLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 282 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAA----------KKRSPCIIFIDE--IDAI 327

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  E   K
Sbjct: 328 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLDK 373

Query: 199 VMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
            +    +    + V     +   +++     +++  D V
Sbjct: 374 ALVRPGRFDRHIVVPNPDVEGRRQILESHMSKILKGDDV 412


>gi|163732301|ref|ZP_02139747.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter litoralis Och 149]
 gi|161394599|gb|EDQ18922.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter litoralis Och 149]
          Length = 773

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 569


>gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17]
 gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17]
          Length = 690

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGQAGAKQEIEEIVEFLKNPKKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS 127
             AG PF  +  + F E+ +VG     V  + R   + A  I+     D V R +A 
Sbjct: 248 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARAK 303


>gi|188584568|ref|YP_001928013.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001]
 gi|179348066|gb|ACB83478.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001]
          Length = 642

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVEEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 266

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 267 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRF 317

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR++ +R+ V+K
Sbjct: 318 DRQIMVPNPDVTGRERILRVHVRK 341


>gi|17232428|ref|NP_488976.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17134074|dbj|BAB76635.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 645

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 50/245 (20%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V  LD  + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +
Sbjct: 171 VKFLD--VAGVDEAKAELEEIVDFLKNATKYTNLGAKI-----PKGVLLVGPPGTGKTLL 223

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           ++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A            ++QA   
Sbjct: 224 AKAIAGEAGVPFFSISGSEFIEL-FVGVGAARV-RDLFEQA------------KKQAPCI 269

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVG 188
                LDAL             R         + E +  +    +++  FD   G   + 
Sbjct: 270 VFIDELDALGKS----------RGGAGGFVGGNDEREQTLNQLLTEMDGFDANTGVIIIA 319

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
             N  E+    +    +   ++ V +                D + R++I  V    +  
Sbjct: 320 ATNRPEVLDPALRRPGRFDRQVVVDR---------------PDKIGREAILKVHARNVKL 364

Query: 249 LDEFD 253
            D+ D
Sbjct: 365 ADDVD 369


>gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
 gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361]
          Length = 720

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK+ V      L+N  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 199 KDVAGQEGAKQEVQEIVEFLKNPEKYTELGGKI-----PKGALLIGPPGTGKTLLAKAVA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  +       A  I+     D V R ++   A
Sbjct: 254 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFAQAKQKAPCIIFIDEIDAVGRARSKNPA 312

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D++I +++ D 
Sbjct: 313 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQISVDLPDL 372

Query: 173 SSDISNFDIP 182
           +   + F + 
Sbjct: 373 TERKAIFQVH 382


>gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 621

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++AK ++   +    N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQEEAKESLVEIVDFLHNPNKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFEQA 253


>gi|326431627|gb|EGD77197.1| ATP-dependent Zn protease [Salpingoeca sp. ATCC 50818]
          Length = 750

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+N  +  +L   L     PK +LL+GP G GKT ++R +A
Sbjct: 295 DDVQGADEAKQELMNVVEFLKNPTKFTRLGGRL-----PKGVLLMGPPGTGKTLLARAVA 349

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF     ++F E+ YVG    ++ RDL   A            ++ A        
Sbjct: 350 GEAGVPFFYSSGSEFDEM-YVGVGARRV-RDLFAAA------------KKHAPCIVFMDE 395

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
           LDA+ GK    + ++  R  L    +     +          +NF      ++      +
Sbjct: 396 LDAVGGKRHAKD-QQYLRMTLNQLLVELDGFEPSDTVVVIGATNFPDALDPALVRPGRFD 454

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
              KV     + +  +         + DE D
Sbjct: 455 THVKVPLPDVRGRQAILKAHARKVKLADEED 485


>gi|297300681|ref|XP_002805639.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 2
           [Macaca mulatta]
          Length = 683

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 240 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 294

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 295 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 353

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 354 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 413

Query: 171 DTSSDISN 178
               D+  
Sbjct: 414 VPRPDVKG 421


>gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
 gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
          Length = 644

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 33/188 (17%)

Query: 10  REIVSE----LDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +EI  E      + + GQ++AK +   +   L+   + +++ A       P+  LLVGP 
Sbjct: 172 KEIKGEDTGITFKDVAGQEEAKESMQEIVSFLKTPDKYKEIGA-----RCPRGALLVGPP 226

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G GKT I++ +A  AG PF ++  ++F E+ +VGR    V  + +   + A  I+     
Sbjct: 227 GTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAKVRDLFKQANEKAPCIIFIDEI 285

Query: 120 DEVREQ--ASINAEER-------ILDALVGKT--------ATSNTREVFRKKLRDGEISD 162
           D V ++  AS+N+ +        +L  + G          A +N  E   K L      D
Sbjct: 286 DAVGKRRDASLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDKALLRPGRFD 345

Query: 163 KEIDIEVA 170
           + I +E+ 
Sbjct: 346 RRIPVELP 353


>gi|213027550|ref|ZP_03341997.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 287

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 628

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 39/267 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G  +AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 171 LFDDVAGVDEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF  +  ++F E+ +VG     V  + +   + A  I+     D V R++      
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAVGRQRGAGIGG 287

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G    S        N  +V    L      D+++ ++  D   
Sbjct: 288 GNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALLRPGRFDRQVTVDAPDIKG 347

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +S  D+            +L S++      ++           L+ + +   I      
Sbjct: 348 RLSILDVHA-------RDKKLSSEISLEAIARRTPGFTGADLANLLNEAA---ILTARRR 397

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG 261
           +++I M+E       D  D++VA   G
Sbjct: 398 KEAITMLEIN-----DAVDRVVAGMEG 419


>gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 630

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 16  LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   + G ++AK  +      L+N  R   + A +     PK +LLVGP G GKT +++ 
Sbjct: 172 LFDDVAGIEEAKEELQEVVTFLKNSERFTAVGARI-----PKGVLLVGPPGTGKTLLAKA 226

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 227 IAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 278


>gi|303233293|ref|ZP_07319964.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
 gi|302480593|gb|EFL43682.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
          Length = 635

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 23/170 (13%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +    N  +   + A       PK  LLVGP G GKT ++R +A
Sbjct: 181 NDVAGQDEAKDSLHEIVSFLDNPKKYAAIGA-----RCPKGALLVGPPGTGKTLLARAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF ++  ++F E+ +VGR    V  + +   + A  I+     D V ++  ++  
Sbjct: 236 GEAKVPFFQISGSEFVEM-FVGRGAAKVRDLFKQAKEKAPCIIFIDELDTVGKKRGMSIN 294

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                      +     +   + L + +  D    I V   ++     D 
Sbjct: 295 -----------SNDEREQTLNQLLAEMDGFDNHEGIVVLAATNRPETLDP 333


>gi|294055281|ref|YP_003548939.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614614|gb|ADE54769.1| ATP-dependent metalloprotease FtsH [Coraliomargarita akajimensis
           DSM 45221]
          Length = 683

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 97/274 (35%), Gaps = 32/274 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           RE  S   + + G  +AK  V+     LR+  + Q++   +     PK +L+VGP G GK
Sbjct: 185 REKDSVTFKDVAGCDEAKEEVSEVVDFLRDPKKFQRIGGRI-----PKGVLMVGPPGTGK 239

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  IV     D V 
Sbjct: 240 TLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDMFEQGRKNAPCIVFIDEIDAVG 298

Query: 124 EQA----------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEI 165
            Q                  +L  + G          A +N  +V    L      D+++
Sbjct: 299 RQRGAGLGGGNDEREQTLNSLLVEMDGFDGHEGVIIIAATNRPDVLDNALLRPGRFDRQV 358

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            I++ D +       +          ++         G       ++      +    + 
Sbjct: 359 TIDLPDLNGRHEILQVHAKKIALSEEVNLEHVARNTPGFSGADLANLLNEGALIAARYNK 418

Query: 226 RLIDMDTV--HRDSIQMVENYGIVFLDEFDKIVA 257
           +++DM  +   RD I        +  DE  KI A
Sbjct: 419 KVVDMQDIDEARDKISFGRERRKLMDDEDRKITA 452


>gi|168040828|ref|XP_001772895.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675806|gb|EDQ62297.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 696

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+   + + +  +R +    +   + PK +LLVGP G GKT +++ +A  A
Sbjct: 234 KDVAGVDEAKQDF-VEVVDFLKRPERFTSVGARI-PKGVLLVGPPGTGKTLLAKAIAGEA 291

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 292 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 350

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 351 DEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDAALLRPGRFDRQVTVDVPDVRGRT 410

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +         ++S     +   G                       L++   +   
Sbjct: 411 EILKVHASNKKFDDDVSLDIIAMRTPGFSGAD---------------LANLLNEAAILTG 455

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 456 RRGKTAISAKEIDDSIDRIVAGMEG 480


>gi|163847597|ref|YP_001635641.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525452|ref|YP_002569923.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
 gi|163668886|gb|ABY35252.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449331|gb|ACM53597.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl]
          Length = 654

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + GQ++AK+ +A  +       + P         +P+ +L+VGP G GKT +SR +A  
Sbjct: 170 DVAGQEEAKQDLAEIV----EFLKFPDKFAALGARIPRGVLMVGPPGTGKTLLSRAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 226 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 257


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 102/298 (34%), Gaps = 39/298 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I       + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 341 PEDITVTF-EDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKL-----PKGVLLVGPPGTG 394

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 395 KTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVG 454

Query: 124 EQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVAD 171
            + + +     A + I   L           V        R  L    +     D+EV  
Sbjct: 455 AKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGRFDVEVVV 514

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            + D +     G   +    L ++ SK +   +  +               + + +++  
Sbjct: 515 PTPDFT-----GRKEILTYYLGKILSKDINIDQLARGTTGFTGA-------DIENMVNQA 562

Query: 232 TVHRDSIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + R +I   E   +  L+   DK++            E     +    EG      Y
Sbjct: 563 AL-RAAIDGAEVVNMKHLENARDKVLMGPERKSRLPDEEA--NKITAYHEGGHAIVAY 617


>gi|268316402|ref|YP_003290121.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
 gi|310946760|sp|D0MGU8|FTSH_RHOM4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262333936|gb|ACY47733.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252]
          Length = 697

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  VA  +   +N  +  +L   L     PK +LLVGP G GKT +++ +A
Sbjct: 211 KDVAGLDEAKEEVAEIVEFLKNPKKFTRLGGKL-----PKGVLLVGPPGTGKTLLAKAVA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  + R   + A  I+     D +
Sbjct: 266 GEAGVPFFSISGSDFVEM-FVGVGAARVRDLFRQAKEKAPCIIFIDEIDAI 315


>gi|110680700|ref|YP_683707.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter denitrificans OCh 114]
 gi|109456816|gb|ABG33021.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative
           [Roseobacter denitrificans OCh 114]
          Length = 773

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIK-----LARAGLREPEKPIGNYLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 569


>gi|167761264|ref|ZP_02433391.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
 gi|167660930|gb|EDS05060.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704]
          Length = 648

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 172 KDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 227 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 260


>gi|312282051|dbj|BAJ33891.1| unnamed protein product [Thellungiella halophila]
          Length = 693

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LL+GP G GKT +++ +A  A
Sbjct: 226 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLIGPPGTGKTLLAKAIAGEA 283

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 284 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 342

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 343 DEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 402

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 403 DILKVHSGNKKFENGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 447

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 448 RRGRTAISSKEIDDSIDRIVAGMEG 472


>gi|53804153|ref|YP_114227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus
           capsulatus str. Bath]
 gi|53757914|gb|AAU92205.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus
           capsulatus str. Bath]
          Length = 756

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ S L   + GQ +A  A++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 452 RDLESNLKMLVFGQDEAIAALSSAIK------LSRAGLRDGQKPIGSFLFAGPTGVGKTE 505

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++R+LAR+ G   I+ +++++ E            GYVG +   ++ + ++   +
Sbjct: 506 VTRQLARMLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAINKHPH 560


>gi|83310222|ref|YP_420486.1| ATPase with chaperone activity, ATP-binding subunit
           [Magnetospirillum magneticum AMB-1]
 gi|82945063|dbj|BAE49927.1| ATPase with chaperone activity, ATP-binding subunit
           [Magnetospirillum magneticum AMB-1]
          Length = 764

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  A+A A++              E      L  GPTGVGKT +
Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA++ G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 509 ARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQHPHS 563


>gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora]
          Length = 846

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 38/241 (15%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 364 DVHGCDEAKEELQELIDFLRNPEKYSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 418

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ RDL   A            + +A        L
Sbjct: 419 EAGVPFFNMSGSEFEEV-YVGVGAKRV-RDLFAAA------------KAKAPSIVFIDEL 464

Query: 136 DALVGKTATSNT---REVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVG 188
           DA+ G+  + +    R+   + L + +  ++   + +   ++   + D     PG     
Sbjct: 465 DAIGGRRNSRDATYVRQTLNQLLTELDGFEQNSGVIIIGATNFPESLDKALTRPGRFDRN 524

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPE---------LMRDESDRLIDMDTVHRDSIQ 239
           ++         M   +    R+                 L   E + +++   +H   ++
Sbjct: 525 VVVSLPDVRGRMAILKHHAKRIKAAADVNLEAIASRTSGLSGAELENIVNQAAIHASKLK 584

Query: 240 M 240
            
Sbjct: 585 A 585


>gi|23016165|ref|ZP_00055924.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 765

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  A+A A++              E      L  GPTGVGKT +
Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA++ G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 509 ARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQHPHS 563


>gi|332240524|ref|XP_003269437.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2
           [Nomascus leucogenys]
          Length = 723

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 280 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 334

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 335 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 393

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 394 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 453

Query: 171 DTSSDISN 178
               D+  
Sbjct: 454 VPRPDVKG 461


>gi|168007929|ref|XP_001756660.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692256|gb|EDQ78614.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 677

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 194 DVKGVDEAKAELEEIV--HYLRDPQRFTSLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 251

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 252 VPFFYCSGSEFEEM-FVGVGARRV-RDLFSAAKKR 284


>gi|110633726|ref|YP_673934.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Mesorhizobium
           sp. BNC1]
 gi|110284710|gb|ABG62769.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Chelativorans
           sp. BNC1]
          Length = 819

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL R + GQ  A  A+A A++              E    + L  GPTGVGKT +++
Sbjct: 466 LETELKRVVYGQDKAIEALASAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAK 520

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 521 QLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca]
          Length = 634

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 172 LFDDVAGVEEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 230 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKETAPCIVFIDEIDAV 278


>gi|284053281|ref|ZP_06383491.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str.
           Paraca]
          Length = 280

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G ++AK  +A     L+N  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 165 DDIAGVEEAKAELAEVVDFLKNPQRFLEIGARI-----PKGLLLVGPPGTGKTLMAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 220 GEAGVPFFSISASEFVEL-FVGTGAARV-RDLFEQA 253


>gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 645

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G+ +AK     +   L N  + Q++ A     + PK  LLVGP G GKT +++ +A
Sbjct: 168 NDVAGEDEAKELLTEIVDFLHNPQKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             AG PF  +  ++F E+ +VG      +RDL   A 
Sbjct: 223 GEAGVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQAN 257


>gi|302791427|ref|XP_002977480.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii]
 gi|300154850|gb|EFJ21484.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii]
          Length = 684

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 202 DVKGVDEAKAELEEIV--HYLRDPKKFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 259

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 260 VPFFYCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 292


>gi|331083543|ref|ZP_08332654.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403754|gb|EGG83306.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 636

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 178 KDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 232

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 233 GEAHVPFFSLSGSDFVEM-FVGVGASRV-RDLFEEAKKN 269


>gi|331091603|ref|ZP_08340437.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403360|gb|EGG82919.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 666

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 182 KDVAGQDEAKESLQEVVDFLHNPGKYTSIGAKL-----PKGALLVGPPGTGKTLLAKAVA 236

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 237 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 270


>gi|313888858|ref|ZP_07822518.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845031|gb|EFR32432.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 634

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK A++     L N  +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 171 VAGQDEAKEALSELVDFLHNPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V  + +  V+ A  I+     D + ++
Sbjct: 226 AEVPFFSISGSAFVEM-FVGLGAAKVRDLFKQAVEKAPCIIFIDEIDTIGKK 276


>gi|163854236|ref|YP_001642279.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens
           PA1]
 gi|218533182|ref|YP_002423998.1| ATP-dependent metalloprotease FtsH [Methylobacterium
           chloromethanicum CM4]
 gi|240141697|ref|YP_002966177.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens AM1]
 gi|254564205|ref|YP_003071300.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens DM4]
 gi|163665841|gb|ABY33208.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens
           PA1]
 gi|218525485|gb|ACK86070.1| ATP-dependent metalloprotease FtsH [Methylobacterium
           chloromethanicum CM4]
 gi|240011674|gb|ACS42900.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens AM1]
 gi|254271483|emb|CAX27498.1| cell division protease; ATP-dependent metalloprotease
           [Methylobacterium extorquens DM4]
          Length = 642

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 DDVAGVEEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 266

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 267 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRF 317

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR++ +R+ V+K
Sbjct: 318 DRQIMVPNPDVTGRERILRVHVRK 341


>gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           mitochondrial; Short=OsFTSH5; Flags: Precursor
 gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica
           Group]
 gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group]
          Length = 715

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 231 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 288

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 289 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 321


>gi|302780769|ref|XP_002972159.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii]
 gi|300160458|gb|EFJ27076.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii]
          Length = 669

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 187 DVKGVDEAKAELEEIV--HYLRDPKKFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 244

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 245 VPFFYCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 277


>gi|297825729|ref|XP_002880747.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326586|gb|EFH57006.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 718

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 228 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 285

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 286 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAAKKC 318


>gi|18401040|ref|NP_565616.1| ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75100022|sp|O80983|FTSH4_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=AtFTSH4; Flags: Precursor
 gi|20197264|gb|AAC31223.2| FtsH protease, putative [Arabidopsis thaliana]
 gi|330252705|gb|AEC07799.1| cell division protease ftsH-4 [Arabidopsis thaliana]
          Length = 717

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 228 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 285

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 286 VPFFSCSGSEFEEM-FVGVGARRV-RDLFSAAKKC 318


>gi|281207472|gb|EFA81655.1| Putative FtsH protease [Polysphondylium pallidum PN500]
          Length = 791

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG  +AK   + +   LRN  +        R+ ++PK ILLVGP G GKT +++ LA
Sbjct: 244 DDVIGADEAKSELQDLVDYLRNPNKYI-----DRNIVIPKGILLVGPPGTGKTLLAKALA 298

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF+ +  ++F E+ ++G   +++ RDL + A
Sbjct: 299 GEARIPFLTINGSEFEEM-FIGVGAKRV-RDLFETA 332


>gi|260587222|ref|ZP_05853135.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542417|gb|EEX22986.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 638

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 180 KDVAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 235 GEAHVPFFSLSGSDFVEM-FVGVGASRV-RDLFEEAKKN 271


>gi|125526519|gb|EAY74633.1| hypothetical protein OsI_02522 [Oryza sativa Indica Group]
          Length = 709

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 224 DVKGVDEAKAELEEIV--HYLRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 282 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 314


>gi|145495511|ref|XP_001433748.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400868|emb|CAK66351.1| unnamed protein product [Paramecium tetraurelia]
          Length = 785

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 29/185 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   R     L+   + ++L A +     P+  LL GP G GKT +++  A
Sbjct: 292 KDVAGQEEAKGEIREFVDFLKAPKKYKKLGARI-----PRGALLTGPPGTGKTLLAKACA 346

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--------- 122
             AG PF  V  ++F E+ YVG     V ++ +     A +IV     D V         
Sbjct: 347 GEAGVPFFYVSGSEFVEM-YVGLGAARVRELFKQAKSKAPSIVFIDEIDAVGKKRNSKGS 405

Query: 123 REQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
           + +   N   ++L  + G    S        N R+     L      D+ I+I + D + 
Sbjct: 406 KNEERDNTLNQLLVEMDGFGTDSTVVVLAATNMRDSLDPALTRPGRFDRSIEITLPDING 465

Query: 175 DISNF 179
               F
Sbjct: 466 RKEIF 470


>gi|162149244|ref|YP_001603705.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787821|emb|CAP57419.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 778

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A+  A++              E    N L  GPTGVGKT
Sbjct: 459 TLRTLERDLKGMVYGQDRAIEALTAAIK-----LSRAGLRDPEKPIGNYLFSGPTGVGKT 513

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 514 EVAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 569


>gi|4454688|gb|AAD20962.1| FtsH homolog [Homo sapiens]
          Length = 517

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 76  PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 130

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 131 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 189

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 190 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 249

Query: 171 DTSSDISN 178
               D+  
Sbjct: 250 VPRPDVKG 257


>gi|115437800|ref|NP_001043384.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|75272532|sp|Q8LQJ9|FTSH4_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 4,
           mitochondrial; Short=OsFTSH4; Flags: Precursor
 gi|20521391|dbj|BAB91902.1| cell division protein-like [Oryza sativa Japonica Group]
 gi|113532915|dbj|BAF05298.1| Os01g0574400 [Oryza sativa Japonica Group]
 gi|125570900|gb|EAZ12415.1| hypothetical protein OsJ_02305 [Oryza sativa Japonica Group]
          Length = 709

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 224 DVKGVDEAKAELEEIV--HYLRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 282 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 314


>gi|46206271|ref|ZP_00047502.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 264

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 21  EDVAGVEEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 75

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 76  GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 131

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 132 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRF 182

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR++ +R+ V+K
Sbjct: 183 DRQIMVPNPDVTGRERILRVHVRK 206


>gi|255569271|ref|XP_002525603.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223535039|gb|EEF36721.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 816

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 40/210 (19%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 341 DVAGVDEAKEELEEIVEFLRNPDRYIRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 395

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRD 120
            A  PFI    ++F E+ YVG    ++ RDL                  A+   R+ +  
Sbjct: 396 EAEVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGKFR 453

Query: 121 EVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
            V          ++L  + G  + S        N  +V    LR     D+ + +E  D 
Sbjct: 454 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDR 513

Query: 173 SS-------DISNFDIPGGASVGILNLSEL 195
                     +S  ++P G  V + +++ +
Sbjct: 514 KGREAILKVHVSKKELPLGEEVDLSDIASM 543


>gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group]
          Length = 702

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 218 DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 275

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 276 VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 308


>gi|168044454|ref|XP_001774696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673996|gb|EDQ60511.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 687

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 204 DVKGVDEAKAELEEIV--HYLRDPQRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 261

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 262 VPFFYCSGSEFEEM-FVGVGARRV-RDLFAAAKKR 294


>gi|153854579|ref|ZP_01995849.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
 gi|149752888|gb|EDM62819.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814]
          Length = 671

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 169 KDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 224 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 257


>gi|154484306|ref|ZP_02026754.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC
           27560]
 gi|149734783|gb|EDM50700.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC
           27560]
          Length = 657

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK +   +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQEEAKESVVELVDFLHNPGKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 240 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 273


>gi|297564905|ref|YP_003683877.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
 gi|296849354|gb|ADH62369.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
          Length = 626

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK   + +   L+N  R  ++ A +     PK +LLVGP G GKT I+R +A
Sbjct: 154 RDVAGCDEAKEELKELVEFLKNPGRFHEMGARI-----PKGVLLVGPPGSGKTHIARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PFI    + F E+ +VG    ++ RDL + A   
Sbjct: 209 GEAKVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRH 245


>gi|209545020|ref|YP_002277249.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532697|gb|ACI52634.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 778

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A+  A++              E    N L  GPTGVGKT
Sbjct: 459 TLRTLERDLKGMVYGQDRAIEALTAAIK-----LSRAGLRDPEKPIGNYLFSGPTGVGKT 513

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA+  G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 514 EVAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 569


>gi|187830070|ref|NP_001120720.1| LOC100147734 [Zea mays]
 gi|166093207|gb|ABY82589.1| filamentation temperature-sensitive H 2A [Zea mays]
 gi|166093211|gb|ABY82591.1| filamentation temperature-sensitive H 2A [Zea mays]
          Length = 677

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 214 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 272 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 330

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 331 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 390

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + GG      ++S     +   G                       L++   +   
Sbjct: 391 EILKVHGGNKKFDSDVSLDVIAMRTPGFSGAD---------------LANLLNEAAILAG 435

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 436 RRGRTAISSKEIDDSIDRIVAGMEG 460


>gi|225028027|ref|ZP_03717219.1| hypothetical protein EUBHAL_02296 [Eubacterium hallii DSM 3353]
 gi|224954627|gb|EEG35836.1| hypothetical protein EUBHAL_02296 [Eubacterium hallii DSM 3353]
          Length = 677

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 180 DVAGQDEAKESLTEMVDFLHNPGKYIEIGARL-----PKGALLVGPPGTGKTLLAKAVAG 234

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 235 EANVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 267


>gi|332297151|ref|YP_004439073.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332180254|gb|AEE15942.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 660

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  + + + +  +  +   D+  ++ PK +LLVGP G GKT ++R +A  A 
Sbjct: 208 DVAGVDEAKEEL-VEVVDFLKSPKKYTDIGGKI-PKGVLLVGPPGTGKTLLARAVAGEAN 265

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF K+  + F E+ +VG    ++ RDL   A            RE+A        LDA+
Sbjct: 266 VPFFKISGSDFVEM-FVGVGASRV-RDLFKQA------------REKAPCIVFIDELDAI 311

Query: 139 VGKTATSNTREVFRKK 154
                 S      R++
Sbjct: 312 GKSRVNSINGNDEREQ 327


>gi|254502137|ref|ZP_05114288.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222438208|gb|EEE44887.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 608

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 20/233 (8%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G  +AKR +   + +  +  +    L   + PK ILLVGP G GKT ++R +A  AG 
Sbjct: 159 VAGVDEAKRELKEIV-DFLKDPKSYGRLGAHV-PKGILLVGPPGTGKTLLARAVAGEAGV 216

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139
           PF  +  ++F E+ +VG    ++ RDL + A               A I  +E  LDAL 
Sbjct: 217 PFFSISGSEFVEM-FVGVGAARV-RDLFEQARKAAP----------AIIFIDE--LDAL- 261

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDI-EVADTSSDISNFDIPGGASVGILNLSELFSK 198
           G+  +S       +K +       E+D  + +     ++  + P      +L       +
Sbjct: 262 GRARSSGAMGTNDEKEQTLNQLLTELDGFDPSSGIILLAATNRPEILDQALLRAGRFDRQ 321

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           V+     K  R ++   +  + +    +  D+D V + +           ++E
Sbjct: 322 VLVDRPDKIGRRAILDVH--VKKITLAKDTDLDQVAQLTAGFSGADLATLINE 372


>gi|254426145|ref|ZP_05039862.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188568|gb|EDX83533.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 652

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 22/159 (13%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  +   L A +     PK +LLVGP G GKT ++R +A
Sbjct: 175 DDVAGVDEAKAELQEIVDFLQHAQKYVSLGAKI-----PKGVLLVGPPGTGKTLLARAIA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ +VG    ++ RDL + A            ++QA        
Sbjct: 230 GEAGVPFFSISASEFIEM-FVGVGASRV-RDLFEQA------------KQQAPCIVFIDE 275

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           LDAL    A++N      ++ +       E+D  V +  
Sbjct: 276 LDALGKSRASNNRFAGNDEREQTLNQLLAEMDGFVPNAG 314


>gi|296206359|ref|XP_002750181.1| PREDICTED: ATP-dependent metalloprotease YME1L1 isoform 2
           [Callithrix jacchus]
          Length = 683

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 240 PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 294

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 295 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 353

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 354 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 413

Query: 171 DTSSDISN 178
               D+  
Sbjct: 414 VPRPDVKG 421


>gi|210615344|ref|ZP_03290508.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
 gi|210150371|gb|EEA81380.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787]
          Length = 688

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 200 KDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 255 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 288


>gi|304391582|ref|ZP_07373524.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ahrensia sp.
           R2A130]
 gi|303295811|gb|EFL90169.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ahrensia sp.
           R2A130]
          Length = 817

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + I  EL R + GQ  A  A++ A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 459 KNINDELKRMVYGQDKAIDALSSAIK------LARAGLREPNKPIGSYLFSGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 VVKQLADTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGMLTDGVDQHPHC 568



 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE + R    +    L       ++       ++Q +  +   G+  D T D++  +A
Sbjct: 645 FAPEFRNRLDAIIPFDGLKPEVIHQVVQK----FVMQLEAQLSERGVTFDLTPDAVSWIA 700

Query: 372 DVAVNLNSTVGDIGARRLQTVMER-----VLEDISFSASDLQEKTVVIDAEYVRLH 422
               +       +GAR L  V++      + +++ F     +  TV +  E V   
Sbjct: 701 KEGYD-----DRMGARPLGRVIQEHIKKPLADEVLF-GKLQKGGTVKVGVETVDGK 750


>gi|9506353|emb|CAB99462.1| putative ATPases [Homo sapiens]
          Length = 517

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK+ +      L+N  +   L   L     PK ILLVGP G G
Sbjct: 76  PVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKL-----PKGILLVGPPGTG 130

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV---EQIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 131 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGATRIRNLFREAKANAPCVIFIDELDSV 189

Query: 123 REQASI--------NAEERILDALVGKTATSNT----REVFRKKLRDGEISDKEIDIEVA 170
             +               ++L  + G              F + L +  I     D++V 
Sbjct: 190 GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 249

Query: 171 DTSSDISN 178
               D+  
Sbjct: 250 VPRPDVKG 257


>gi|302836037|ref|XP_002949579.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f.
           nagariensis]
 gi|300264938|gb|EFJ49131.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f.
           nagariensis]
          Length = 559

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           VS     + G  +AK  +   +   + R            P  +LLVGP G GKT +++ 
Sbjct: 198 VSTTFADVAGVDEAKEELQEIVE--YLRSPERFSRLGARPPAGVLLVGPPGTGKTLLAKA 255

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  ++F E+ YVG    ++ R+L   A
Sbjct: 256 VAGEAGVPFFSISASEFVEL-YVGMGAMRV-RELFAAA 291


>gi|225573316|ref|ZP_03782071.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039328|gb|EEG49574.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM
           10507]
          Length = 686

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 182 KDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 236

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 237 GEAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFEEAKKN 273


>gi|118443590|ref|YP_877423.1| cell division protein ftsH [Clostridium novyi NT]
 gi|118134046|gb|ABK61090.1| cell division protein ftsH [Clostridium novyi NT]
          Length = 611

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  +  +I +E         + GQ +AK ++      L N  +   + A L     PK
Sbjct: 143 MSFGKNNAKIYAENETGKTFNDVAGQDEAKESLIEIVDFLHNPDKYVAIGAKL-----PK 197

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 198 GALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGASRV-RDLFEQA 251


>gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
 gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
          Length = 599

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L++  +  ++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 157 KDVAGVDEAKEELQEVVEFLKHPKKFIEMGARI-----PKGVLLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQAKKN 248


>gi|302838550|ref|XP_002950833.1| hypothetical protein VOLCADRAFT_91205 [Volvox carteri f.
           nagariensis]
 gi|300263950|gb|EFJ48148.1| hypothetical protein VOLCADRAFT_91205 [Volvox carteri f.
           nagariensis]
          Length = 585

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP 44
           SPRE+V  LD+++IGQ+ AK+ +A+A  N ++R    
Sbjct: 104 SPRELVRALDQHVIGQEHAKKVLAVATHNHYKRILCG 140



 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 241 VENYGIVFLDEFDKIVARDSGN---GIGVSREGVQRDLLPLVEGSSVSTK 287
           V   GIV++DE DKI  R +        VS EGVQ+ LL ++EG+ V+  
Sbjct: 311 VAQQGIVYIDEIDKIAKRSAEGFTITRDVSGEGVQQALLKMLEGTVVNVP 360


>gi|225429526|ref|XP_002279005.1| PREDICTED: similar to ftsH-like protease [Vitis vinifera]
          Length = 713

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 34/220 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  A
Sbjct: 221 NDVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 278

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA
Sbjct: 279 EVPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCIIFIDE--IDA 324

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + G      +R    ++     ++   ++++    +  I              N  E   
Sbjct: 325 IGG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLD 370

Query: 198 KVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
           K +    +    + V     +   ++M     +++  D V
Sbjct: 371 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKGDDV 410


>gi|168047367|ref|XP_001776142.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672517|gb|EDQ59053.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 495

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 105/289 (36%), Gaps = 43/289 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +V+  D  + G   AK  +A  +     R           +PK +LLVGP G GKT +
Sbjct: 200 KNLVNFTD--VAGIDTAKAELAEIVA--CLRGTSNYASLGAKLPKGVLLVGPPGTGKTLL 255

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           +R +A  AG PF     ++F E+ +VGR   +I R+L   A                 + 
Sbjct: 256 ARAVAGEAGVPFFSASASEFVEM-FVGRGAARI-RELFAEAKKNTPS----------IVF 303

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG-ASVG 188
            +E  LDA+ G               + G   + E D  +    +++  FD   G   + 
Sbjct: 304 IDE--LDAVGG---------------KRGRSFNDERDQTLNQLLTEMDGFDSETGVMVIA 346

Query: 189 ILNLSELFSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
             N  E+    +    +   R++V     +     L        +D D     ++     
Sbjct: 347 ATNRPEVLDAALTRPGRISRRVNVDAPDFEGRQQVLAVHMRSTPVDGDAATVRAVIAKLT 406

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
            G V  D    +    +   +  +REG     L   + + +  KYG  +
Sbjct: 407 PGFVGAD----LANVVNEAALLAAREGRPAVTLDDFKEAVIRAKYGVGD 451


>gi|22299375|ref|NP_682622.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22295558|dbj|BAC09384.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 644

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   + A +     PK +LL+GP G GKT +++ +A 
Sbjct: 173 DVAGIEEAKEELQEVVTFLKNSEKFTSIGARI-----PKGVLLIGPPGTGKTLLAKAIAG 227

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + R   + A  +V     D V
Sbjct: 228 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAKENAPCLVFIDEIDAV 276


>gi|225574008|ref|ZP_03782653.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038738|gb|EEG48984.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
          Length = 617

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +   +    +     P   RD    MPK  LLVGP G GKT +++ +A 
Sbjct: 170 DVAGEDEAKELLTEIVDYLHY-----PEKYRDIGASMPKGALLVGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 225 EANVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 258


>gi|302849390|ref|XP_002956225.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
 gi|300258528|gb|EFJ42764.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f.
           nagariensis]
          Length = 640

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P+   S     + G  +AK  +   +   + R           +PK +LLVGP G G
Sbjct: 171 DLKPQMNSSTRFADVKGVDEAKHELEEIVE--YLRDPHKFTNLGGKLPKGVLLVGPPGTG 228

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT ++R +A  AG PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 229 KTMLARAIAGEAGVPFFYCSGSEFEEV-FVGVGARRV-RDLFTAAKKH 274


>gi|253681680|ref|ZP_04862477.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
 gi|253561392|gb|EES90844.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum D str.
           1873]
          Length = 611

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  +  +I +E +       + GQ +AK ++      L N  +  ++ A L     PK
Sbjct: 143 MSFGKNNAKIYAESETGKTFDDVAGQDEAKESLIEIVDFLHNPDKYVEIGAKL-----PK 197

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 198 GALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFKQA 251


>gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis]
          Length = 695

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 235 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 292

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 293 GVPFFSISGSEFVEM-FVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 351

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 352 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRT 411

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + GG      ++S     +   G                       L++   +   
Sbjct: 412 EILKVHGGNKKFDSDVSLGVIAMRTPGFSGAD---------------LANLLNEAAILAG 456

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 457 RRGRSAISAKEIDDSIDRIVAGMEG 481


>gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa]
 gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 96/281 (34%), Gaps = 41/281 (14%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K  F   P   V+     + G  +AK+     +    + ++  A      +PK +LLVGP
Sbjct: 217 KAKFQMEPSTGVTF--DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGP 272

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + +   + A  IV    
Sbjct: 273 PGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDE 331

Query: 119 RDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEI 160
            D V R++                ++L  + G          A +N  ++    L     
Sbjct: 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGR 391

Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
            D+++ ++V D         +  G      ++S     +   G                 
Sbjct: 392 FDRQVTVDVPDIRGRTEILKVHAGNKKFDADVSLDVISMRTPGFSGAD------------ 439

Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261
                 L++   +                D  D+IVA   G
Sbjct: 440 ---LANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEG 477


>gi|197287224|ref|YP_002153096.1| cell division protein [Proteus mirabilis HI4320]
 gi|227357081|ref|ZP_03841451.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
 gi|194684711|emb|CAR46686.1| cell division protein [Proteus mirabilis HI4320]
 gi|227162773|gb|EEI47736.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
          Length = 646

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R           +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLRDPGRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|89901195|ref|YP_523666.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118]
 gi|89345932|gb|ABD70135.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rhodoferax
           ferrireducens T118]
          Length = 616

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 10/196 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +A+  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 157 DVAGVDEARHELEEVV-DFLKHPQEYGRLGAHI-PKGVLLVGPPGTGKTLLAKAVAGEAG 214

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A      +    +     ++A  R   A 
Sbjct: 215 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA-----RAMAPAIIFIDELDALGRARGAF 267

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G        +   + L + +  D  + + +   ++     D       G  +   L  +
Sbjct: 268 PGLGGHDEKEQTLNQLLSEMDGFDSSVGLIILSATNRPEILDS-ALLRAGRFDRQVLVDR 326

Query: 199 VMGSGRKKKIRMSVQK 214
               GR   +++ V+K
Sbjct: 327 PDRKGRIDILKVHVRK 342


>gi|159899548|ref|YP_001545795.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892587|gb|ABX05667.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 651

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK+    V   L+   +  QL A +     P+ +L+VGP G GKT +SR +A 
Sbjct: 190 DVAGQEEAKQDLTEVVEFLKFPEKFAQLGARI-----PRGVLMVGPPGTGKTLLSRAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 245 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 277


>gi|78358454|ref|YP_389903.1| FtsH-2 peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220859|gb|ABB40208.1| membrane protease FtsH catalytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 627

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LL GP G GKT +++ +A  A 
Sbjct: 158 DVAGVDEAKADLVEIV-DFLKNPQEYGRLGARI-PKGVLLAGPPGTGKTLLAKAVAGEAA 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A           V+  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA----------RVQAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|238899016|ref|YP_002924698.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466776|gb|ACQ68550.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 641

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +  ++ R+          +P  ILLVGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELV--QYLREPGRFQKLGGKIPTGILLVGPPGTGKTLLAKAIAGEAN 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       +  I+     D V
Sbjct: 211 VPFFSISGSDFVEM-FVGVGASRVRDMFEKAKKASPCIIFIDEIDAV 256


>gi|218885163|ref|YP_002434484.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756117|gb|ACL07016.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 671

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++  +    N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 153 EDVAGVDEAKEELSEVVEFLSNPRKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFMQGKKSAPCLIFIDEIDAV 257


>gi|183221237|ref|YP_001839233.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911328|ref|YP_001962883.1| ATP-dependent clp protease ATP-binding subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776004|gb|ABZ94305.1| ATP-dependent clp protease ATP-binding subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779659|gb|ABZ97957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 756

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           EI +     + GQ  A   +  A+   + R    + L DE  P  + L VGPTGVGKT +
Sbjct: 462 EIKTV----VFGQDHAIEQIVDAI--HYSR----SGLGDEGKPIGSFLFVGPTGVGKTEV 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           ++ LA   G  F++ +++++ E            GYVG +    + D +    + V    
Sbjct: 512 AKTLAEKMGVEFLRFDMSEYMEKHSVSRLIGSPPGYVGYDQGGQLTDAIAKTPHCVL--L 569

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
            DE+ E+A  +    +L  +   T T +T
Sbjct: 570 FDEI-EKAHEDIYNILLQVMDHATLTDST 597


>gi|50084542|ref|YP_046052.1| ATP-binding protease component [Acinetobacter sp. ADP1]
 gi|49530518|emb|CAG68230.1| ATP-binding protease component [Acinetobacter sp. ADP1]
          Length = 758

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    N +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKAPDKPVGNFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 506 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 558


>gi|83945503|ref|ZP_00957850.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851079|gb|EAP88937.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis
           alexandrii HTCC2633]
          Length = 777

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ + L R + GQ DA   +A A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 457 RDLENSLKRVVFGQDDAIEKLASAIK------LARAGLREPNKPIGSYLFSGPTGVGKTE 510

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++R+LA   G   ++ +++++ E            GYVG +    + D +D   + 
Sbjct: 511 VARQLADTLGVELLRFDMSEYMERHTVSRLLGAPPGYVGYDQGGQLTDAIDQHPHS 566


>gi|300022148|ref|YP_003754759.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523969|gb|ADJ22438.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 816

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L R + GQ  A  A++ A++              E      L  GPTGVGKT +++
Sbjct: 459 IDRDLKRLVFGQDKAIEALSSAIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEVAK 513

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +LA L G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 QLANLMGVELLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 566


>gi|85543015|gb|ABC71388.1| putative FtsH protease [Triticum monococcum]
          Length = 531

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 95/262 (36%), Gaps = 37/262 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  A 
Sbjct: 3   DVKGVDEAKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAS 60

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     ++F E+ +VG    ++ RDL   A          + R    I  +E  +DA+
Sbjct: 61  VPFFSCSGSEFEEM-FVGVGARRV-RDLFAAA----------KKRSPCIIFIDE--IDAI 106

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
            G      +R    ++     ++   ++++    +  I              N  E   K
Sbjct: 107 GG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI--------AATNFPESLDK 152

Query: 199 VMGSGRKKKIRMSV--QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256
            +          S    +     +   + R+ D+    +       +  I+F+DE D I 
Sbjct: 153 ALVRPEASVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKK-----RSPCIIFIDEIDAIG 207

Query: 257 ARDSGNGIGVSREGVQRDLLPL 278
              +       +  + + L+ L
Sbjct: 208 GSRNPKDQQYMKMTLNQLLVEL 229


>gi|78185968|ref|YP_374011.1| peptidase M41, FtsH [Chlorobium luteolum DSM 273]
 gi|123583630|sp|Q3B6R3|FTSH_PELLD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|78165870|gb|ABB22968.1| membrane protease FtsH catalytic subunit [Chlorobium luteolum DSM
           273]
          Length = 706

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 186 LYENLDEHTRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTRLGGKL-----PKGVLLVGP 240

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + R   + A  I+    
Sbjct: 241 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFRQAKEKAPCIIFIDE 299

Query: 119 RDEV 122
            D V
Sbjct: 300 IDAV 303


>gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 639

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 EDVAGVDEAKEDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKN 247


>gi|115920164|ref|XP_783782.2| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Strongylocentrotus purpuratus]
 gi|115949155|ref|XP_001184581.1| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Strongylocentrotus purpuratus]
          Length = 792

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 93/283 (32%), Gaps = 32/283 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q  ADL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 303 KDVAGCEEAKLEIMEFV-NFLKNPQKYADLGAKI-PKGAILSGPPGTGKTLLAKATAGEA 360

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +         
Sbjct: 361 NVPFITVNGSEFLEM-FVGVGPSRVRDMFAMARKNAPCILFMDEIDAVGRKRGK------ 413

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
                     S       + L + +  +   ++ V   ++     D P     G  +   
Sbjct: 414 ----SNFGGQSEQENTLNQLLVEMDGFNTTTNVVVLAGTNRPDILD-PALMRPGRFDRQI 468

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
                   GR    ++        L  +     ++MD + R         G    D    
Sbjct: 469 YIGAPDIKGRASIFKVH----LKPLKTE-----VNMDEISRK--LAALTPGFTGAD---- 513

Query: 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
           I    +   +  +R G  +      E +      G      +L
Sbjct: 514 IANVCNEAALIAARHGFNQIENSHFEAAIERVVAGLEKKTQVL 556


>gi|226329690|ref|ZP_03805208.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
 gi|225202876|gb|EEG85230.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
          Length = 424

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 101/289 (34%), Gaps = 36/289 (12%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R           +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLRDPGRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V 
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
            Q       R      G      T      ++   E ++  I I     +++  +   P 
Sbjct: 258 RQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI----AATNRPDVLDPA 306

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTV 233
               G  +   +    +   R ++  + V      L  D    ++          D+  +
Sbjct: 307 LLRPGRFDRQVVVG--LPDVRGREQILKVHMRRVPLSPDVDPAILARGTPGFSGADLANL 364

Query: 234 HRDSIQMVE--NYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLL 276
             ++       N  +V + EF    DKI+       + ++ E  +  LL
Sbjct: 365 VNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEEQKKHQLL 413


>gi|298530331|ref|ZP_07017733.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509705|gb|EFI33609.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 743

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 27/230 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGKTAIS 70
           +   L   I GQ  A +A+  A+    +R +  A LR+E     N LL+GPTGVGKT +S
Sbjct: 447 LDQHLQDAIFGQDKAIQALTRAV----KRSR--AGLREENKTIGNFLLIGPTGVGKTELS 500

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           R++A++ G  FI+ +++++ E            GYVG +   ++ + +      +     
Sbjct: 501 RQMAQVMGVSFIRFDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTESIRKNPYSIL--LL 558

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ E+A  +    +L  +   T T N+      +     ++      E++  S      
Sbjct: 559 DEI-EKAHPDMFNILLQIMDYATLTDNSGRKADFRHVTLLMTSNAGAREMSSPSIGFGQE 617

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           +     + G+  +  +FS         + R+     +  L ++   +++D
Sbjct: 618 NQEDLTAKGVKAVENMFSPEF------RNRLDAIIPFNALSKEVMQQVVD 661


>gi|170750724|ref|YP_001756984.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657246|gb|ACB26301.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans
           JCM 2831]
          Length = 640

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 DDVAGVEEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 266

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 267 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRF 317

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR++ +R+ V+K
Sbjct: 318 DRQIMVPNPDVTGRERILRVHVRK 341


>gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ zinc ion binding [Arabidopsis
           thaliana]
 gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=AtFTSH2; AltName: Full=Protein
           VARIEGATED 2; Flags: Precursor
 gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana]
 gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana]
 gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana]
          Length = 695

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 227 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKI-----PKGVLLIGPPGTGKTLLAKAIA 281

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 282 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 340

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 341 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S                  +    P     +   L++   +
Sbjct: 401 GRTDILKVHAGNKKFDNDVS---------------LEIIAMRTPGFSGADLANLLNEAAI 445

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 446 LAGRRARTSISSKEIDDSIDRIVAGMEG 473


>gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 695

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 227 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKI-----PKGVLLIGPPGTGKTLLAKAIA 281

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 282 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 340

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 341 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S                  +    P     +   L++   +
Sbjct: 401 GRTDILKVHAGNKKFDNDVS---------------LEIIAMRTPGFSGADLANLLNEAAI 445

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 446 LAGRRARTSISSKEIDDSIDRIVAGMEG 473


>gi|298291486|ref|YP_003693425.1| ATP-dependent Clp protease ATP-binding subunit clpA [Starkeya
           novella DSM 506]
 gi|296927997|gb|ADH88806.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Starkeya
           novella DSM 506]
          Length = 812

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L R + GQ  A  A+A A++              E    + L  GPTGVGKT +++
Sbjct: 460 LETTLKRVVYGQDKAIEALASAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 515 QLASSLGVELLRFDMSEYMERHTISRLIGAPPGYVGFDQGGLLTDGIDQHPHC 567


>gi|291520851|emb|CBK79144.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 677

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+++K   R +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 180 QDVAGQEESKESLREIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 235 GEAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 268


>gi|226355735|ref|YP_002785475.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           deserti VCD115]
 gi|226317725|gb|ACO45721.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Deinococcus deserti VCD115]
          Length = 739

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 18/113 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           +  +L   + GQ +A  AVA A++         A LRD+  P+ + L  GPTGVGKT ++
Sbjct: 447 LERDLKSRVFGQDEAVEAVASAVK------LARAGLRDQTKPQGMFLFAGPTGVGKTELA 500

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           R LA   G    + +++++ E            GYVG +   ++ D V    +
Sbjct: 501 RALAERLGIELTRFDMSEYQEAHTVARLIGAPPGYVGFDQGGLLTDAVARHPH 553


>gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 629

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 172 LFDDVAGVEEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 230 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKETAPCIVFIDEIDAV 278


>gi|195328328|ref|XP_002030868.1| GM24348 [Drosophila sechellia]
 gi|194119811|gb|EDW41854.1| GM24348 [Drosophila sechellia]
          Length = 766

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 251 MQSTAKLTNPNEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 306

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 307 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 365

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 366 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 425

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 426 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKM 467


>gi|160893082|ref|ZP_02073870.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50]
 gi|156865165|gb|EDO58596.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50]
          Length = 624

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A 
Sbjct: 182 DVAGEEEAKESLTEMVDFLHNPKKYLDIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 236

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 237 EANVPFFSMSGSSFVEM-YVGVGASRV-RDLFKQA 269


>gi|15827019|ref|NP_301282.1| integral membrane peptidase [Mycobacterium leprae TN]
 gi|221229497|ref|YP_002502913.1| putative integral membrane peptidase [Mycobacterium leprae Br4923]
 gi|13092566|emb|CAC29730.1| putative integral membrane peptidase [Mycobacterium leprae]
 gi|219932604|emb|CAR70315.1| putative integral membrane peptidase [Mycobacterium leprae Br4923]
          Length = 790

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGVDEAVEELYEIKDFLQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 254


>gi|317420108|emb|CBN82144.1| ATP-dependent metalloprotease YME1L1 [Dicentrarchus labrax]
          Length = 701

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   L+N  +   L   L     PK ILLVGP G G
Sbjct: 255 PIQMKNVTFEHVKGVEEAKNELQDVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 309

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF     ++F E+ +VG    +I R+L   A
Sbjct: 310 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI-RNLFKEA 352


>gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
 gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM
           17241]
          Length = 653

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E+       + G  + K  +   +   +N  +   L A +     PK +LL+GP G G
Sbjct: 166 PEEMPKVTFNDVAGADEEKEELVEIVEFLKNPSKFNSLGARI-----PKGVLLMGPPGTG 220

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 KTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 266


>gi|118593590|ref|ZP_01550967.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
 gi|118433808|gb|EAV40468.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614]
          Length = 608

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 30/224 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AKR +   + +  +       L   + PK ILLVGP G GKT ++R +A  A
Sbjct: 157 QNVAGVDEAKRELKEIV-DFLKEPASYGRLGAHV-PKGILLVGPPGTGKTLLARAVAGEA 214

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
           G PF  +  ++F E+ +VG    ++ RDL + A               A I  +E  LDA
Sbjct: 215 GVPFFSISGSEFVEM-FVGVGAARV-RDLFEQARKAAP----------AIIFIDE--LDA 260

Query: 138 L------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           L          +     +   + L + +  D    I +   ++     D        +L 
Sbjct: 261 LGRARAAGPMGSNDEKEQTLNQLLTELDGFDPSSGIILLAATNRPEILDP------ALLR 314

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                 +V+     K  R ++   + + ++  +D  ID+D V +
Sbjct: 315 AGRFDRQVLVDRPDKIGRRAILDVHVKKIKLAAD--IDLDQVAQ 356


>gi|14423720|sp|Q9CD58|FTSH_MYCLE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3097225|emb|CAA18796.1| cell division protein FtsH [Mycobacterium leprae]
          Length = 787

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 251


>gi|166031033|ref|ZP_02233862.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
 gi|166029300|gb|EDR48057.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC
           27755]
          Length = 616

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 171 KDVAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 226 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 259


>gi|147902617|ref|NP_001084592.1| YME1-like 1 [Xenopus laevis]
 gi|46250073|gb|AAH68681.1| MGC81087 protein [Xenopus laevis]
          Length = 716

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 32/238 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P  + +    ++ G ++AK   + V   L+N  +   L   L     PK ILLVGP G G
Sbjct: 273 PVHMKNVTFEHVKGAEEAKNELQEVVDFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 327

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 328 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKANAPCVIFIDELDSV 386

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 387 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 433

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
                G  ++     +    GR + ++         L + + D  ID + + R ++  
Sbjct: 434 ALIRPGRFDMQVTVPRPDVKGRTEILKW-------YLSKIKFDVAIDPEIIARGTVGF 484


>gi|291562242|emb|CBL41058.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SS3/4]
          Length = 616

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           +TF  S  +I +E +       + G+++AK   + +   L +  +   + A L     PK
Sbjct: 157 MTFGKSNAKIYAESETGVTFADVAGEEEAKDALKEIVDFLHDPKKYSDIGATL-----PK 211

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 212 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 266


>gi|296135939|ref|YP_003643181.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
 gi|295796061|gb|ADG30851.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
          Length = 629

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 29/222 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+N     +L A       PK +LLVGP GVGKT ++R +A 
Sbjct: 179 DVAGVDEAKAELEEVVDFLKNPGEHSRLGA-----RAPKGVLLVGPPGVGKTLLARAVAG 233

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  L
Sbjct: 234 EAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA----------REKSPAIIFIDE--L 279

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF---DIPGGASVGILNL 192
           DAL    + +       +K  +  ++   ++++  D++S I      + P      +L  
Sbjct: 280 DALGRARSAAPFGGGHDEK--EQTLNQLLVELDGFDSTSSIVILAATNRPEILDPALLRA 337

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                +V+     K  R+ + K +   ++   D  +D++ V 
Sbjct: 338 GRFDRQVLVERPDKVGRVQILKVHA--VKIRLDPSVDLEQVA 377


>gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa]
 gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 91/270 (33%), Gaps = 39/270 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 233 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 290

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 291 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 349

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 350 DEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVTVDVPDVRGRT 409

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +         ++S                  V    P     +   L++   +   
Sbjct: 410 EILKVHASNKKFDADVSLD---------------VVAMRTPGFSGADLANLLNEAAILAG 454

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
                        D  D++  R + N    
Sbjct: 455 RRGKAAISSKEIDDSIDRLCGRRNKNYFET 484


>gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
 gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
          Length = 605

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +A  +          PA   D   LMPK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLAEIVDYLH-----NPAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            +  PF  +  ++F E+ +VG      +RDL   A            +E+A        +
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA------------KEKAPCIVFIDEI 266

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLSE 194
           DA+              KK       + E +  +    +++  F+   G  +    N  E
Sbjct: 267 DAI-------------GKKRDGQIGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPE 313

Query: 195 LFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQM 240
                +    +   R+ V+    K    +++  + ++   D V+  +I  
Sbjct: 314 SLDPALTRPGRFDRRVPVELPDLKGREAILQVHARKIKVSDDVNFHTIAR 363


>gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 629

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 172 LFDDVAGVEEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 230 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKETAPCIVFIDEIDAV 278


>gi|295698486|ref|YP_003603141.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
 gi|291157308|gb|ADD79753.1| ATP-dependent metallopeptidase HflB [Candidatus Riesia pediculicola
           USDA]
          Length = 605

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           EI +  D  + G  +AK  V   +   + R+          +PK IL++GP G GKT ++
Sbjct: 147 EIKTTFDD-VAGCDEAKEEVKELVE--YLREPDRFKKLGGKIPKGILMIGPPGTGKTLLA 203

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 204 KAIAGEARVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|290997828|ref|XP_002681483.1| aaa ATPase family protein [Naegleria gruberi]
 gi|284095107|gb|EFC48739.1| aaa ATPase family protein [Naegleria gruberi]
          Length = 948

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 31/191 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AKR +      L+N  + + + A +     PK  LLVGP G GKT +++ +A
Sbjct: 466 KDVAGLDEAKREITEFVDFLKNPKKFRDIGARI-----PKGALLVGPPGTGKTLLAKAVA 520

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--------- 122
             AG PF  +  ++F E+  VG     V ++ ++  D A +I+     D V         
Sbjct: 521 GEAGVPFYSISGSEFVEM-VVGVGPARVRKLFKEAKDNAPSIIFIDEIDAVGRQRGTGKF 579

Query: 123 --REQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
             R     N   ++L  + G T        A +N  E+  K L      D+ ID+ +AD 
Sbjct: 580 MGRNDERENTLNQLLVEMDGFTPATGVVVLAATNRSEILDKALTRPGRFDRSIDVSIADI 639

Query: 173 SSDISNFDIPG 183
                 F +  
Sbjct: 640 KGREEIFKVHM 650


>gi|255659247|ref|ZP_05404656.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848701|gb|EEX68708.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 662

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK     V   L++  +  +L A +     PK +LL GP G GKT ++R +A
Sbjct: 157 RDVAGADEAKQELEEVVEFLKHPKKFNELGARI-----PKGVLLFGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 248


>gi|294340162|emb|CAZ88534.1| Cell division protease ftsH [Thiomonas sp. 3As]
          Length = 629

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 29/222 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+N     +L A       PK +LLVGP GVGKT ++R +A 
Sbjct: 179 DVAGVDEAKAELEEVVDFLKNPVEHSRLGA-----RAPKGVLLVGPPGVGKTLLARAVAG 233

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  L
Sbjct: 234 EAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA----------REKSPAIIFIDE--L 279

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF---DIPGGASVGILNL 192
           DAL    + +       +K  +  ++   ++++  D++S I      + P      +L  
Sbjct: 280 DALGRARSAAPFGGGHDEK--EQTLNQLLVELDGFDSTSSIVILAATNRPEILDPALLRA 337

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                +V+     K  R+ + K +   ++   D  +D++ V 
Sbjct: 338 GRFDRQVLVERPDKVGRVQILKVHA--VKIRLDPSVDLEQVA 377


>gi|154505068|ref|ZP_02041806.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
 gi|153794547|gb|EDN76967.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
          Length = 629

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +          P   R+    MPK  LLVGP G GKT +++ +A 
Sbjct: 177 DVAGEDEAKELLSEIVDYLH-----DPDKYREMGAAMPKGALLVGPPGTGKTLLAKAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 232 EANVPFFSISGSEFVEM-FVGMGAAKV-RDLFQQAN 265


>gi|260467070|ref|ZP_05813250.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum
           WSM2075]
 gi|259029179|gb|EEW30475.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum
           WSM2075]
          Length = 642

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKEDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 248


>gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 628

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 171 LFDDVAGVEEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKETAPCIIFIDEIDAV 277


>gi|320161491|ref|YP_004174715.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
 gi|319995344|dbj|BAJ64115.1| cell division protein FtsH [Anaerolinea thermophila UNI-1]
          Length = 623

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   LR   +  QL A +     PK +LLVGP G GKT I++ ++
Sbjct: 164 DDVAGVDEAKEELKEVVEFLREPQKFIQLGARI-----PKGVLLVGPPGTGKTLIAKAVS 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 219 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQARRH 255


>gi|291536774|emb|CBL09886.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 719

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 195 KDVAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GEAKVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 283


>gi|325264718|ref|ZP_08131447.1| cell division protein FtsH [Clostridium sp. D5]
 gi|324030010|gb|EGB91296.1| cell division protein FtsH [Clostridium sp. D5]
          Length = 696

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 227 QDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 281

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 282 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 315


>gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
 gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
          Length = 622

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G+ +AK     +   L N  + Q++ A     + PK  LLVGP G GKT +++ +A
Sbjct: 169 NDVAGEDEAKELLTEIVDFLHNPKKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             A  PF  +  ++F E+ +VG      +RDL   A 
Sbjct: 224 GEANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQAN 258


>gi|78485157|ref|YP_391082.1| ATP-dependent metalloprotease FtsH [Thiomicrospira crunogena XCL-2]
 gi|78363443|gb|ABB41408.1| membrane protease FtsH catalytic subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 651

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  ++   LD  + G  +AK  V      LR+  + Q L  ++     P+ +L+VGP G
Sbjct: 148 LSDDQVKVNLDD-VAGADEAKEEVGEIVDFLRDPEKYQNLGGNI-----PRGVLMVGPPG 201

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 202 TGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 246


>gi|319781031|ref|YP_004140507.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166919|gb|ADV10457.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 642

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKEDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 248


>gi|294084617|ref|YP_003551375.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664190|gb|ADE39291.1| ATPase with chaperone activity, ATP-binding subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 764

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ  A  A++ A++              E    N L  GPTGVGKT ++R
Sbjct: 450 LEDDLKRLVFGQDAAISALSSAIK-----LSRAGLREVEKPVGNYLFSGPTGVGKTEVAR 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA   G   I+ +++++ E            GYVG +   ++ D VD   +
Sbjct: 505 QLAEALGIKLIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVDQTPH 556


>gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
 gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
          Length = 631

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 33/188 (17%)

Query: 10  REIVSE----LDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +EI  E      + + GQ++AK +   +   L+   +  ++ A       P+  LLVGP 
Sbjct: 161 KEIKGEDTGVTFKDVAGQEEAKESMQEIVGFLKTPDKYTEIGA-----RSPRGALLVGPP 215

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G GKT I++ +A  AG PF ++  ++F E+ +VGR    V  + +   + A  I+     
Sbjct: 216 GTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAKVRDLFKQANEKAPCIIFIDEI 274

Query: 120 DEVREQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISD 162
           D V ++                ++L  + G          A +N  E   + L      D
Sbjct: 275 DAVGKRRDAPLNTNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDQALLRPGRFD 334

Query: 163 KEIDIEVA 170
           + I +E+ 
Sbjct: 335 RRIPVELP 342


>gi|157163907|ref|YP_001467283.1| putative cell division protease FtsH-like protein [Campylobacter
           concisus 13826]
 gi|112801847|gb|EAT99191.1| putative Cell division protease FtsH homolog [Campylobacter
           concisus 13826]
          Length = 641

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 38/288 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  V      L++  +  +L A +     PK ILLVGP G GKT ++R +A
Sbjct: 176 DDVAGVEEAKEEVQEIVDYLKSPDKYLRLGAKI-----PKGILLVGPPGTGKTLLARAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A          +    A +  +E  
Sbjct: 231 GEASVPFFSMSASSFIEM-FVGVGASRV-RDLFENA----------KKEAPAIVFIDE-- 276

Query: 135 LDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +DA+                +   + L + +  D +    +   +++            G
Sbjct: 277 IDAIGKSRNSGPMGGNDEREQTLNQLLSEMDGFDADKSPVIVIAATNRPEVLDAALLRPG 336

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
             +   L  K    GR   +++ ++         +  + ++++ + R +  +        
Sbjct: 337 RFDRQVLVDKPDFKGRCDILKVHMKD-------VKIGKDVNIEDIARLTTGLAGADLENI 389

Query: 249 LDEFDKIVARDSGNGIGVSR--EGVQRDLLPLVEGS-SVSTKYGSINT 293
           ++E   +  R S   +  +   E V+R +  L + S  V+ K   I T
Sbjct: 390 INEAALLAGRKSKTFVEQADLVEAVERSIAGLEKKSRRVNPKEKKIVT 437


>gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 603

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 19  YIIGQQDAKRAVAIAL-RNR----WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G+ +AK  +   +        ++            MPK ILLVGP G GKT +++ +
Sbjct: 166 DVAGEDEAKENLTEIVDYLHDPSKYKDIGAS-------MPKGILLVGPPGTGKTMLAKAV 218

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  A  PF  +  ++F E+ +VG      +RDL   A            +E+A       
Sbjct: 219 AGEANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA------------KEKAPCIVFID 264

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNL 192
            +DA+              KK       + E +  +    +++  F+   G  +    N 
Sbjct: 265 EIDAI-------------GKKRDGQIGGNDEREQTLNQLLTEMDGFEGNSGVMILAATNR 311

Query: 193 SELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQM 240
            +     +    +   R+ V+    K   E+++  + ++   D V    I  
Sbjct: 312 PDALDPALTRPGRFDRRVPVELPDLKGREEILKVHAKKIKISDDVDFKIIAR 363


>gi|327481003|gb|AEA84313.1| ATP-dependent metalloprotease FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 626

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPQDYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                      +     +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGSHDEREQTLNQLLTELDGFDASVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|227202564|dbj|BAH56755.1| AT5G42270 [Arabidopsis thaliana]
          Length = 574

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 251 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 305

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 306 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 338


>gi|269925293|ref|YP_003321916.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|310946768|sp|D1CDT8|FTSH_THET1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269788953|gb|ACZ41094.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 646

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ +A  +   +N  + Q+L        +PK +LL+GP G GKT ++R +A
Sbjct: 197 DDVAGIEEAKQELAEIVDFLKNPQKYQRLGG-----TIPKGVLLIGPPGTGKTLLARAVA 251

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+  VG    ++ R+L   A
Sbjct: 252 GEAGVPFFSMSGSEFVEM-IVGVGAARV-RELFQQA 285


>gi|24665814|ref|NP_730250.1| CG6512, isoform B [Drosophila melanogaster]
 gi|23093247|gb|AAN11704.1| CG6512, isoform B [Drosophila melanogaster]
          Length = 697

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 1   MKLTFNFS-PREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           M+ T   + P EI V    + + G ++AK  +   + N  +  Q   DL  ++ PK  +L
Sbjct: 182 MQSTAKLTNPNEIGVGF--KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAML 237

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+ 
Sbjct: 238 TGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILF 296

Query: 116 ESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRD 157
               D V R++            N   ++L  + G          A +N  ++  K L  
Sbjct: 297 IDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMR 356

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
               D++I +   D     S F +  G     L+ +EL  K+
Sbjct: 357 PGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKM 398


>gi|331268689|ref|YP_004395181.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329125239|gb|AEB75184.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 597

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  +  +I +E         + GQ +AK ++      L N  +  ++ A L     PK
Sbjct: 129 MSFGKNNAKIYAENETGKTFDDVAGQDEAKESLIEIVDFLHNPDKYVEIGAKL-----PK 183

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 184 GALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFKQA 237


>gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 674

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 13  VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                  + G  + K  ++     L+N  +   + A +     PK +LL GP G GKT +
Sbjct: 167 KRFTFSDVAGADEEKEEMSELIDFLKNPRKYAAMGARI-----PKGVLLYGPPGTGKTLL 221

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ 125
           ++ +A  AG PF     + F E+ YVG    ++ RDL       A  IV     + V  +
Sbjct: 222 AKAVAGEAGVPFFAASGSDFDEV-YVGVGASRV-RDLFKEAQLAAPCIVFIDEIEAVARK 279


>gi|297815884|ref|XP_002875825.1| hypothetical protein ARALYDRAFT_485083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321663|gb|EFH52084.1| hypothetical protein ARALYDRAFT_485083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 803

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 31/179 (17%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 327 DVAGVDEAKEELEEIVEFLRNPDKYVRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 381

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV------REQA 126
            A  PFI    ++F E+ YVG     V  +       A +I+     D V      + + 
Sbjct: 382 EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRI 440

Query: 127 SINAE-----ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
             N E      ++L  + G  + S        N  +V    LR     D+ + +E  D 
Sbjct: 441 GSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDK 499


>gi|224065699|ref|XP_002301927.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
 gi|222843653|gb|EEE81200.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
          Length = 704

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 37/268 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 251 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 305

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF     ++F E+ +VG     V  +       A  IV     D V R++      
Sbjct: 306 EAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 364

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G +  S        N  +V    L      D+++ ++  D + 
Sbjct: 365 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 424

Query: 175 DISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +    +   G ++      E  ++         ++  + +    L      + I  D +
Sbjct: 425 RVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDEI 483

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVA 257
             D+++ +    E    V  DE  K+VA
Sbjct: 484 S-DALERIIAGPEKKNAVVSDEKKKLVA 510


>gi|225459844|ref|XP_002285925.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 706

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 37/268 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 253 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 307

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF     ++F E+ +VG     V  +       A  IV     D V R++      
Sbjct: 308 EAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 366

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G +  S        N  +V    L      D+++ ++  D + 
Sbjct: 367 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 426

Query: 175 DISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +    +   G ++      E  ++         ++  + +    L      + I  D +
Sbjct: 427 RVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDEI 485

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVA 257
             D+++ +    E    V  DE  K+VA
Sbjct: 486 S-DALERIIAGPEKKNAVVSDEKKKLVA 512


>gi|330826818|ref|YP_004390121.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|329312190|gb|AEB86605.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 626

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +  ++   + R           MPK ILLVGP G GKT ++R +A  A
Sbjct: 175 DDVAGVDEAKAELRESVE--FLRNPKDYGRLGAHMPKGILLVGPPGTGKTLLARAMAGEA 232

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 233 GVPFFSITGSEFVEM-FVGVGAARV-RDLFEQA 263


>gi|326539412|gb|ADZ87627.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M5-90]
          Length = 651

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 164 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 219 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 268


>gi|326409705|gb|ADZ66770.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M28]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|261325733|ref|ZP_05964930.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33]
 gi|261301713|gb|EEY05210.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|23502549|ref|NP_698676.1| cell division protein FtsH [Brucella suis 1330]
 gi|23348549|gb|AAN30591.1| cell division protein FtsH [Brucella suis 1330]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|255580321|ref|XP_002530989.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
 gi|223529441|gb|EEF31401.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
          Length = 833

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 346 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 400

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +IV     D +
Sbjct: 401 GESGVPFLSISGSDFMEM-FVGVGPSRVRSLFQEARQCAPSIVFIDEIDAI 450


>gi|218129237|ref|ZP_03458041.1| hypothetical protein BACEGG_00813 [Bacteroides eggerthii DSM 20697]
 gi|317475212|ref|ZP_07934479.1| ATP-dependent metallopeptidase HflB [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988615|gb|EEC54935.1| hypothetical protein BACEGG_00813 [Bacteroides eggerthii DSM 20697]
 gi|316908665|gb|EFV30352.1| ATP-dependent metallopeptidase HflB [Bacteroides eggerthii
           1_2_48FAA]
          Length = 681

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    ++ Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 191 KDVAGLAEAKQEVEEIVE-FLKQPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 248

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +A   A   
Sbjct: 249 NVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARAKAAAMGG 307

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 308 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDVNER 367

Query: 176 ISNFDIP 182
              F + 
Sbjct: 368 KEVFGVH 374


>gi|225853147|ref|YP_002733380.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457]
 gi|265991727|ref|ZP_06104284.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995564|ref|ZP_06108121.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999343|ref|ZP_05465893.2| FtsH [Brucella melitensis bv. 2 str. 63/9]
 gi|225641512|gb|ACO01426.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457]
 gi|262766848|gb|EEZ12466.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002683|gb|EEZ15086.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093360|gb|EEZ17429.1| FtsH [Brucella melitensis bv. 2 str. 63/9]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|17986626|ref|NP_539260.1| cell division protein FTSH [Brucella melitensis bv. 1 str. 16M]
 gi|17982240|gb|AAL51524.1| cell division protein ftsh [Brucella melitensis bv. 1 str. 16M]
          Length = 651

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 164 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 219 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 268


>gi|238917604|ref|YP_002931121.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238872964|gb|ACR72674.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 716

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRW--RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +    +  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 211 KDVAGQDEAKESLTEIVDFLHYPEKYAKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 266 GEADVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 299


>gi|161619621|ref|YP_001593508.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365]
 gi|256370100|ref|YP_003107611.1| cell division protein FtsH [Brucella microti CCM 4915]
 gi|260568778|ref|ZP_05839246.1| FtsH protein [Brucella suis bv. 4 str. 40]
 gi|261219281|ref|ZP_05933562.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1]
 gi|261315941|ref|ZP_05955138.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M163/99/10]
 gi|261316197|ref|ZP_05955394.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94]
 gi|261322342|ref|ZP_05961539.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1]
 gi|261750847|ref|ZP_05994556.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513]
 gi|261754100|ref|ZP_05997809.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686]
 gi|261757345|ref|ZP_06001054.1| cell division protein [Brucella sp. F5/99]
 gi|265984709|ref|ZP_06097444.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13]
 gi|265987260|ref|ZP_06099817.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M292/94/1]
 gi|294850944|ref|ZP_06791620.1| cell division protease FtsH [Brucella sp. NVSL 07-0026]
 gi|306837847|ref|ZP_07470709.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653]
 gi|161336432|gb|ABX62737.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365]
 gi|256000263|gb|ACU48662.1| cell division protein FtsH [Brucella microti CCM 4915]
 gi|260154162|gb|EEW89244.1| FtsH protein [Brucella suis bv. 4 str. 40]
 gi|260924370|gb|EEX90938.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1]
 gi|261295032|gb|EEX98528.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1]
 gi|261295420|gb|EEX98916.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94]
 gi|261304967|gb|EEY08464.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M163/99/10]
 gi|261737329|gb|EEY25325.1| cell division protein [Brucella sp. F5/99]
 gi|261740600|gb|EEY28526.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513]
 gi|261743853|gb|EEY31779.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686]
 gi|264659457|gb|EEZ29718.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis
           M292/94/1]
 gi|264663301|gb|EEZ33562.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13]
 gi|294821587|gb|EFG38583.1| cell division protease FtsH [Brucella sp. NVSL 07-0026]
 gi|306407086|gb|EFM63303.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|256061729|ref|ZP_05451866.1| cell division protein FtsH [Brucella neotomae 5K33]
          Length = 653

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana]
          Length = 695

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 227 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKI-----PKGVLLIGPPGTGKTLLAKAIA 281

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 282 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 340

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 341 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 400

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S                  +    P     +   L++   +
Sbjct: 401 GRTDILKVHAGNKKFDNDVS---------------LEIIAMRTPGFSGADLANLLNEAAI 445

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 446 LAGRRARTSISSKEIDDSIDRIVAGMEG 473


>gi|168185579|ref|ZP_02620214.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169296515|gb|EDS78648.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 611

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  +  +I +E         + GQ +AK ++      L N  +   + A L     PK
Sbjct: 143 MSFGKNNAKIYAENETGKTFNDVAGQDEAKESLIEIVDFLHNPDKYVAIGAKL-----PK 197

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 198 GALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA 251


>gi|13473326|ref|NP_104893.1| metalloprotease (cell division protein) FtsH [Mesorhizobium loti
           MAFF303099]
 gi|14024075|dbj|BAB50679.1| metalloprotease (cell division protein); FtsH [Mesorhizobium loti
           MAFF303099]
          Length = 642

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKEDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 248


>gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 606

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +      L N  + +++ A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGEDEAKENLTEIVEYLHNPGKYKEIGASM-----PKGILLVGPPGTGKTMLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 224 EANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFQQA 256


>gi|256045302|ref|ZP_05448196.1| cell division protein FtsH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114260|ref|ZP_05455005.1| cell division protein FtsH [Brucella melitensis bv. 3 str. Ether]
          Length = 653

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|225628260|ref|ZP_03786294.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo]
 gi|254700353|ref|ZP_05162181.1| cell division protein FtsH [Brucella suis bv. 5 str. 513]
 gi|254703470|ref|ZP_05165298.1| cell division protein FtsH [Brucella suis bv. 3 str. 686]
 gi|254708441|ref|ZP_05170269.1| cell division protein FtsH [Brucella pinnipedialis M163/99/10]
 gi|254708706|ref|ZP_05170517.1| cell division protein FtsH [Brucella pinnipedialis B2/94]
 gi|254714553|ref|ZP_05176364.1| cell division protein FtsH [Brucella ceti M644/93/1]
 gi|254717450|ref|ZP_05179261.1| cell division protein FtsH [Brucella ceti M13/05/1]
 gi|254719694|ref|ZP_05181505.1| cell division protein FtsH [Brucella sp. 83/13]
 gi|256030232|ref|ZP_05443846.1| cell division protein FtsH [Brucella pinnipedialis M292/94/1]
 gi|260167907|ref|ZP_05754718.1| cell division protein FtsH [Brucella sp. F5/99]
 gi|225616106|gb|EEH13154.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo]
          Length = 653

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|219870744|ref|YP_002475119.1| cell division protein [Haemophilus parasuis SH0165]
 gi|219690948|gb|ACL32171.1| cell division protein [Haemophilus parasuis SH0165]
          Length = 642

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I + L   + G  +AK  VA     LR+  + Q+L   +     PK IL+VGP G G
Sbjct: 146 PDQIKTRL-TDVAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGTG 199

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT +++ +A  A  PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 200 KTLLAKAIAGEANVPFFTMAGSDFVEM-FVGVGASRV-RDLFDQAKKN 245


>gi|312113136|ref|YP_004010732.1| ATP-dependent Clp protease ATP-binding subunit clpA [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218265|gb|ADP69633.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 786

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L R + GQ  A  A++ A++              E    + L  GPTGVGKT +
Sbjct: 459 RNLEGDLRRVVFGQDQAIHALSAAIK-----LARAGLRDAEKPIGSYLFSGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA L G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 ARQLASLLGVQILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQNPHC 568


>gi|148658441|ref|YP_001278646.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
 gi|148570551|gb|ABQ92696.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1]
          Length = 640

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK+    V   L+   +   L A +     P+ +L+VGP G GKT +SR +A 
Sbjct: 165 DVAGQEEAKQDLTEVVEFLKFPDKFAALGARI-----PRGVLMVGPPGTGKTLLSRAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 220 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 252


>gi|306844684|ref|ZP_07477269.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1]
 gi|306274856|gb|EFM56626.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1]
          Length = 640

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|297248963|ref|ZP_06932671.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196]
 gi|297174096|gb|EFH33453.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196]
          Length = 651

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 164 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 219 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 268


>gi|261222816|ref|ZP_05937097.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94]
 gi|265998775|ref|ZP_06111332.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1]
 gi|260921400|gb|EEX88053.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94]
 gi|262553464|gb|EEZ09233.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|218132155|ref|ZP_03460959.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992949|gb|EEC58947.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC
           43243]
          Length = 216

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 57  DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 111

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQ 125
            +  PF  +  ++F E+ +VG      +RDL     + A  IV     D + ++
Sbjct: 112 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQAKEKAPCIVFIDEIDAIGKK 163


>gi|62290563|ref|YP_222356.1| cell division protein FtsH FtsH [Brucella abortus bv. 1 str. 9-941]
 gi|82700479|ref|YP_415053.1| peptidase M41 [Brucella melitensis biovar Abortus 2308]
 gi|189024783|ref|YP_001935551.1| FtsH, cell division protein FtsH [Brucella abortus S19]
 gi|260547192|ref|ZP_05822930.1| FtsH protein [Brucella abortus NCTC 8038]
 gi|260755391|ref|ZP_05867739.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str.
           870]
 gi|260758612|ref|ZP_05870960.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str.
           292]
 gi|260884407|ref|ZP_05896021.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str.
           C68]
 gi|62196695|gb|AAX74995.1| FtsH, cell division protein FtsH [Brucella abortus bv. 1 str.
           9-941]
 gi|82616580|emb|CAJ11659.1| Peptidase M41:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA
           ATPase, central region:AAA-protein
           subdomain:ATP-dependent [Brucella melitensis biovar
           Abortus 2308]
 gi|189020355|gb|ACD73077.1| FtsH, cell division protein FtsH [Brucella abortus S19]
 gi|260095557|gb|EEW79435.1| FtsH protein [Brucella abortus NCTC 8038]
 gi|260668930|gb|EEX55870.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str.
           292]
 gi|260675499|gb|EEX62320.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str.
           870]
 gi|260873935|gb|EEX81004.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str.
           C68]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
 gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
          Length = 692

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK     +   L+N  +   L   +     P   LL+GP G GKT +++ +A
Sbjct: 181 KDVAGQEGAKQEVEEIVEFLKNPGKYTDLGGKI-----PAGALLIGPPGTGKTLLAKAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +     + A  I+     D V
Sbjct: 236 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKAPCIIFIDEIDAV 285


>gi|262198175|ref|YP_003269384.1| ATP-dependent Clp protease ATP-binding subunit clpA [Haliangium
           ochraceum DSM 14365]
 gi|262081522|gb|ACY17491.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Haliangium
           ochraceum DSM 14365]
          Length = 829

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL R I GQ +A   +A +++              +      L  GPTGVGKT +++
Sbjct: 460 IEDELKRVIYGQDEAVERLAESIK-----LSRAGLSHPDKPTGCFLFAGPTGVGKTELAK 514

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +LA + G  F++ +++++ E            GYVG +   ++ D V+     
Sbjct: 515 QLAGVLGVEFLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDAVNKHPYS 567


>gi|227328604|ref|ZP_03832628.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 646

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|227113767|ref|ZP_03827423.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 646

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|22298071|ref|NP_681318.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294249|dbj|BAC08080.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 619

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +   +   +N  R  Q+ A +     PK +LLVGP G GKT +++ +A
Sbjct: 169 DDVAGVEEAKAELVEIVDFLKNPQRYIQIGARI-----PKGVLLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 224 GEANVPFFSISGSEFVEL-FVGVGSARV-RDLFEQAKKQ 260


>gi|242240755|ref|YP_002988936.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
 gi|242132812|gb|ACS87114.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
          Length = 654

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|168066693|ref|XP_001785268.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663138|gb|EDQ49920.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 693

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGP 61
              S ++    + + + G  +AK+ +   +    N  + Q+L A +     PK  LLVGP
Sbjct: 179 TKLSKKQKDKVMFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKI-----PKGALLVGP 233

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT +++  A  AG PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 234 PGTGKTLLAKATAGEAGVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 280


>gi|332297160|ref|YP_004439082.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema
           brennaborense DSM 12168]
 gi|332180263|gb|AEE15951.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema
           brennaborense DSM 12168]
          Length = 863

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGKTA 68
           R + S L+R I GQ +A   V  A+    +R +  A LRD      N L  GPTGVGKT 
Sbjct: 537 RNLESVLEREIFGQDEAVSLVVQAV----KRSR--AGLRDPDKTAANFLFAGPTGVGKTE 590

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           ++R LA+  G P ++ +++++ E   V R +  
Sbjct: 591 LARALAQSLGMPLLRFDMSEYQEKHTVSRLIGS 623


>gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
 gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
          Length = 692

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK+ +      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGQEGAKQEIQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AGAPF  +  + F E+ +VG     V    R   + A +I+     D V
Sbjct: 251 GEAGAPFFSMSGSDFVEM-FVGVGASRVRDAFRQAKEKAPSIIFIDEIDAV 300


>gi|291528586|emb|CBK94172.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 702

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  R   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ ++G    ++ RDL   A  +
Sbjct: 258 GEAGVPFFSLAGSDFVEM-FIGVGASRV-RDLFKEAQKM 294


>gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1]
 gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 630

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           ++I    +  + G  +AK  +   +   + R           +PK +LLVGP G GKT +
Sbjct: 155 KDIKVTFND-VAGVDEAKEELKEVVA--FLRAPQEYGRLGARIPKGVLLVGPPGTGKTML 211

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF+ +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 ARAIAGEAGVPFLSINGSEFVEM-FVGVGAARV-RDLFEQA 250


>gi|256160407|ref|ZP_05458096.1| cell division protein FtsH [Brucella ceti M490/95/1]
 gi|256255613|ref|ZP_05461149.1| cell division protein FtsH [Brucella ceti B1/94]
          Length = 653

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|253686967|ref|YP_003016157.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753545|gb|ACT11621.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 649

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|226324326|ref|ZP_03799844.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
 gi|225206774|gb|EEG89128.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
          Length = 715

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 219 KDVAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 273

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 274 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 307


>gi|156740727|ref|YP_001430856.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
 gi|156232055|gb|ABU56838.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM
           13941]
          Length = 638

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK+    V   L+   +   L A +     P+ +L+VGP G GKT +SR +A 
Sbjct: 165 DVAGQEEAKQDLTEVVEFLKFPDKFAALGARI-----PRGVLMVGPPGTGKTLLSRAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 220 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 252


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR----WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G  +AK  +   +        +++           +P+ +LLVGP G GKT ++R 
Sbjct: 290 DDVQGVDEAKEELVEVVSCLHGSLNYKKLGA-------KLPRGVLLVGPPGTGKTLLARA 342

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  V  ++F E+ +VGR    V  + ++  + A +I+     D V
Sbjct: 343 VAGEAGIPFFSVSASEFVEV-FVGRGAARVRDLFKEAQEAAPSIIFIDELDAV 394


>gi|46579689|ref|YP_010497.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602831|ref|YP_967231.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris DP4]
 gi|46449104|gb|AAS95756.1| cell division protein FtsH [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563060|gb|ABM28804.1| membrane protease FtsH catalytic subunit [Desulfovibrio vulgaris
           DP4]
 gi|311233484|gb|ADP86338.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris RCH1]
          Length = 656

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++  +    N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 153 EDVAGVDEAKEELSEVVEFLSNPRKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFMQGKKNAPCLIFIDEIDAV 257


>gi|237816069|ref|ZP_04595065.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A]
 gi|254689860|ref|ZP_05153114.1| cell division protein FtsH [Brucella abortus bv. 6 str. 870]
 gi|254730895|ref|ZP_05189473.1| cell division protein FtsH [Brucella abortus bv. 4 str. 292]
 gi|256258114|ref|ZP_05463650.1| cell division protein FtsH [Brucella abortus bv. 9 str. C68]
 gi|237788732|gb|EEP62944.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A]
          Length = 653

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 309 PEEIHVTFDD-VKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 362

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 363 KTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 405


>gi|163845271|ref|YP_001622926.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445]
 gi|163675994|gb|ABY40104.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445]
          Length = 644

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|18408352|ref|NP_566889.1| ftsh7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75337073|sp|Q9SD67|FTSH7_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 7,
           chloroplastic; Short=AtFTSH7; Flags: Precursor
 gi|6522587|emb|CAB61952.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like protein [Arabidopsis thaliana]
 gi|332644718|gb|AEE78239.1| cell division protease ftsH-7 [Arabidopsis thaliana]
          Length = 802

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 31/179 (17%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 326 DVAGVDEAKEELEEIVEFLRNPEKYVRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 380

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            A  PFI    ++F E+ YVG     V  +       A +I+     D V +        
Sbjct: 381 EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRM 439

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                      ++L  + G  + S        N  +V    LR     D+ + +E  D 
Sbjct: 440 GSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDK 498


>gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
 gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606]
          Length = 683

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 31/187 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  + F E+ +VG     V  +     + +  I+     D V R ++    
Sbjct: 258 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFAQAKEKSPCIIFIDEIDAVGRARSKNPS 316

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                   N    +L  + G    S        N  ++  K L      D++I++++ D 
Sbjct: 317 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRADMLDKALLRAGRFDRQINVDLPDL 376

Query: 173 SSDISNF 179
           +  I+ F
Sbjct: 377 AERIAIF 383


>gi|271499168|ref|YP_003332193.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
 gi|270342723|gb|ACZ75488.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
          Length = 650

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|148559481|ref|YP_001259545.1| cell division protein FtsH [Brucella ovis ATCC 25840]
 gi|148370738|gb|ABQ60717.1| cell division protein FtsH [Brucella ovis ATCC 25840]
          Length = 649

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|145351544|ref|XP_001420133.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144580366|gb|ABO98426.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 677

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 32/192 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +  +L A       P  ++LVG  G GKT ++R +A 
Sbjct: 190 DVAGVDEAKEELQEIVDILKNPAKYARLGA-----RPPSGVMLVGAPGTGKTLLARAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            AG PFI +  ++F E+ YVG     V ++       + +IV     D V +        
Sbjct: 245 EAGVPFISISASEFVEL-YVGMGAARVREVFARAKAQSPSIVFIDEIDAVAKSRGDGKMR 303

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  L G    S        N  +     LR     D+ I ++  D 
Sbjct: 304 GMGNDEREQTLNQLLTELDGFETESMVICIAATNRADTLDAALRRPGRFDRTISVDRPDK 363

Query: 173 SSDISNFDIPGG 184
                   +  G
Sbjct: 364 QGRREILAVHTG 375


>gi|153007227|ref|YP_001381552.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152030800|gb|ABS28568.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 623

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L++  R  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 165 DDVAGVDEAKAELKEVVEFLKDPKRYGRLGARM-----PKGVLLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  ++F E+ +VG    ++ RDL + A           ++  A I  +E  
Sbjct: 220 GEAAVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA----------RLKAPAIIFIDE-- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           LDAL G+   S    +     ++  ++   ++++  D S+ I
Sbjct: 266 LDAL-GRARASMPGMMGGHDEKEQTLNQLLVELDGFDPSAGI 306


>gi|301607162|ref|XP_002933186.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Xenopus
           (Silurana) tropicalis]
          Length = 727

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 102/285 (35%), Gaps = 47/285 (16%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P  + +    ++ G ++AK   + V   L+N  +   L   L     PK ILLVGP G G
Sbjct: 284 PIHMKNVTFEHVKGVEEAKHELQEVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 338

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
           KT ++R +A  A  PF     ++F E+ +VG        + R+    A  ++     D V
Sbjct: 339 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRIRNLFREAKGNAPCVIFIDELDSV 397

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
             +       RI            +R+   + L + +   K  +  +   +++       
Sbjct: 398 GGK-------RI-----ESPMHPYSRQTINQLLAEMDGF-KPNEGVIIIGATNFPEALDN 444

Query: 183 GGASVGILNLSELFSKVMGSGRKK-------KIRMSVQKCYPELMRD-------ESDRLI 228
                G  ++     +    GR +       KI+  V      + R        E + L+
Sbjct: 445 ALVRPGRFDMQVTVPRPDVKGRTEILKWYLSKIKFDVSIDPEIIARGTVGFSGAELENLV 504

Query: 229 DMDTVHRDSIQMVENYGIVFLDEF----DKIVARDSGNGIGVSRE 269
           +   +       V+   +V + E     DKI+       + +  +
Sbjct: 505 NQAALKA----AVDGKDMVTMKELEFAKDKILMGPERRSVEIDSK 545


>gi|114331375|ref|YP_747597.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91]
 gi|114308389|gb|ABI59632.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha
           C91]
          Length = 617

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 14/96 (14%)

Query: 20  IIGQQDAKRAVAIAL---RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + G  +AK  +   +   RN   + R    A       PK ILLVGP G GKT ++R +A
Sbjct: 165 VAGVDEAKEELMEIVNFLRNPSEYSRLGGRA-------PKGILLVGPPGTGKTLLARAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 GEAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 251


>gi|307129378|ref|YP_003881394.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
 gi|306526907|gb|ADM96837.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
          Length = 647

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|251791041|ref|YP_003005762.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
 gi|247539662|gb|ACT08283.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
          Length = 650

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|241662241|ref|YP_002980601.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|240864268|gb|ACS61929.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 605

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPQDYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 701

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 239 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 296

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 297 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 355

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 356 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 415

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S     +   G                       L++   +   
Sbjct: 416 EILKVHAGNKKFDADVSLDIIAMRTPGFSGAD---------------LANLLNEAAILAG 460

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 461 RRGKTAISSKEIDDSIDRIVAGMEG 485


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 102/298 (34%), Gaps = 39/298 (13%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I       + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 121 PEDITVTF-EDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKL-----PKGVLLVGPPGTG 174

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 175 KTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKERAPCVIFIDEIDSVG 234

Query: 124 EQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVAD 171
            + + +     A + I   L           V        R  L    +     D+EV  
Sbjct: 235 AKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGRFDVEVVV 294

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            + D +     G   +    L ++ S+ +   +  +               + + +++  
Sbjct: 295 PTPDFT-----GRKEILTYYLGKILSREINIDQLARGTTGFTGA-------DIENMVNQA 342

Query: 232 TVHRDSIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
            + R +I   E   +  L+   DK++            E     +    EG      Y
Sbjct: 343 AL-RAAIDGAETVSMKHLENARDKVLMGPERKSRLPDEEA--NKITAYHEGGHAIVAY 397


>gi|145218956|ref|YP_001129665.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205120|gb|ABP36163.1| membrane protease FtsH catalytic subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 701

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 28/217 (12%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 187 LYENLDEHTRITFTDVAGLDEAKAEVMEVVDFLKDPKKYTRLGGKL-----PKGVLLVGP 241

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 242 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDE 300

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            D V       A       + G     NT      ++ DG  +DK + +  A    D+ +
Sbjct: 301 IDAVGRSRGKGA------MMGGNDERENTLNQLLVEM-DGFATDKGVILMAATNRPDVLD 353

Query: 179 FDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
             +  PG     I+         M + R    ++S+ 
Sbjct: 354 PALLRPGRFDRQIMVDKPDLKGRMDTFRVHTKKLSLS 390


>gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans
           DSM 574]
          Length = 608

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E        + G  + K  +A  +   +N  +  ++ A +     PK +LL GP G GKT
Sbjct: 151 EKKRVTFEDVAGADEVKEELAEIVDFLKNPKKFNEIGAKI-----PKGVLLFGPPGTGKT 205

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
 gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense
           YUAN-3]
          Length = 622

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E        + G  + K   R +   L+N  +  +L A +     PK +LLVGP G GKT
Sbjct: 160 EKKKTTFDDVAGADEEKEELREIVEFLKNPHKFNELGARI-----PKGVLLVGPPGTGKT 214

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 215 LLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 255


>gi|239832778|ref|ZP_04681107.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG
           3301]
 gi|239825045|gb|EEQ96613.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG
           3301]
          Length = 651

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1]
          Length = 790

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 46/233 (19%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+N  +   L A L     PK +LLVGP G GKT ++R +A
Sbjct: 307 QDVHGCDEAKEELQEVVEFLKNPEKFSDLGAKL-----PKGVLLVGPPGTGKTLLARAVA 361

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F EI +VG   +++ R+L   A          + +  A +  +E  
Sbjct: 362 GEAGVPFFYMSGSEFDEI-FVGVGAKRV-RELFTAA----------KNKSPAIVFIDE-- 407

Query: 135 LDALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           LDA+ G       ++ ++   + L + +  D++  I +                 +G  N
Sbjct: 408 LDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDSKIII-----------------IGATN 450

Query: 192 LSELFSKVMGSGRKKKIRMSV----QKCYPELMRDESDRLIDMDTVHRDSIQM 240
           L ++  K +    +    ++V     +    +++  + ++     V  ++I  
Sbjct: 451 LPKMLDKALTRPGRFDRHVNVDLPDVRGRIAILKHHAKKIKVSPDVDLEAIAA 503


>gi|331699843|ref|YP_004336082.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954532|gb|AEA28229.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans
           CB1190]
          Length = 818

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
 gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
          Length = 625

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK ++      L    +   + A L     PK +LLVGP G GKT +++ +A 
Sbjct: 184 DVAGQDEAKESLMEVVDFLHEPEKYAAIGAKL-----PKGVLLVGPPGTGKTLLAKAVAG 238

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 239 EAKVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 272


>gi|302038231|ref|YP_003798553.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606295|emb|CBK42628.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 594

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 25/170 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +AK+ +   +       + P   R     +PK ILLVGP G GKT +++ +A  
Sbjct: 152 DVAGVDEAKQELEEII----EFLKTPEKFRRLGGKIPKGILLVGPPGTGKTLLAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG PF  +  ++F E+ +VG    ++ RDL + A            + +A        LD
Sbjct: 208 AGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------KGKAPCIIFLDELD 253

Query: 137 AL-----VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           AL     VG  A     +   + L + +  D  + + +   ++     D 
Sbjct: 254 ALGKARGVGPMAHEEREQTLNQLLVEMDGFDSRVGVILVAATNRPEILDP 303


>gi|261820121|ref|YP_003258227.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
 gi|261604134|gb|ACX86620.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
          Length = 651

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana]
          Length = 586

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 118 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKI-----PKGVLLIGPPGTGKTLLAKAIA 172

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 173 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 231

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 232 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVK 291

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S                  +    P     +   L++   +
Sbjct: 292 GRTDILKVHAGNKKFDNDVS---------------LEIIAMRTPGFSGADLANLLNEAAI 336

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 337 LAGRRARTSISSKEIDDSIDRIVAGMEG 364


>gi|319936956|ref|ZP_08011366.1| cell division protein ftsH [Coprobacillus sp. 29_1]
 gi|319807892|gb|EFW04471.1| cell division protein ftsH [Coprobacillus sp. 29_1]
          Length = 655

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +   + A +     P+ +LLVGP G GKT ++R +A 
Sbjct: 172 DVAGADEEKEELTELVDFLKNPKKFVSMGAKI-----PRGVLLVGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +     A  I+     D V
Sbjct: 227 EANVPFYSISGSEFVEM-FVGVGAGRVRDMFKKAKQNAPCIIFIDEIDAV 275


>gi|300856978|ref|YP_003781962.1| putative ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
 gi|300437093|gb|ADK16860.1| predicted ATP-dependent metalloprotease FtsH [Clostridium
           ljungdahlii DSM 13528]
          Length = 617

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A 
Sbjct: 167 DVAGQEEAKESLIEIVDFLHNSQKYVSIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 EAKVPFFSISGSAFVEM-FVGMGASRV-RDLFKQA 254


>gi|144898736|emb|CAM75600.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 764

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ+ A  A+A A++              E      L  GPTGVGKT +
Sbjct: 454 RTLERDLKTLVFGQEKAIEALASAIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LAR+ G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 509 ARQLARIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQHPHC 563


>gi|320335152|ref|YP_004171863.1| ATPase AAA-2 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319756441|gb|ADV68198.1| ATPase AAA-2 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 753

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           +   + ++L   + GQ +A R VA A++         A LRD   P+   L  GPTGVGK
Sbjct: 442 TLATLETDLQARVFGQDEAVRQVAGAVK------LARAGLRDPRRPQGAFLFAGPTGVGK 495

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R LA + G   I+ +++++ E            GYVG +   ++ D +    +
Sbjct: 496 TELARALADVLGVNLIRFDMSEYGEAHTVSRLIGAPPGYVGFDQGGLLTDGLARTPH 552


>gi|304384430|ref|ZP_07366835.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
 gi|304334482|gb|EFM00770.1| ATP-dependent metalloprotease FtsH [Prevotella marshii DSM 16973]
          Length = 671

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGQAGAKQEVEEIVEFLKNPKKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V    +   + A +I+     D V R ++   A
Sbjct: 248 GEANVPFFSMSGSDFVEM-FVGVGASRVRDTFQKAKEKAPSIIFIDEIDAVGRARSKNPA 306

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  + L      D++I +++ D 
Sbjct: 307 MGTNDERENTLNALLTEMDGFGTNSGVIILAATNRVDMLDQALLRAGRFDRQIHVDLPDL 366

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 367 TERKEIFMVH 376


>gi|291539854|emb|CBL12965.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 719

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 195 KDVAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GEAKVPFFSLAGSDFVEM-FVGVGASRV-RDLFKEA 283


>gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
 gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
          Length = 633

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 29/204 (14%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + GQ +AK ++      L+N  +  ++ A       P+  LLVGP G GKT +
Sbjct: 176 VDTTFKDVAGQDEAKESLQEIVSFLKNPDKYTEIGA-----RCPRGALLVGPPGTGKTLL 230

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA 126
           ++ +A  AG  F ++  ++F E+ +VGR    V  + ++    A  I+     D V ++ 
Sbjct: 231 AKAVAGEAGVTFFQISGSEFVEM-FVGRGAAKVRDLFKEANKKAPCIIFIDEIDAVGKKR 289

Query: 127 ---------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEV 169
                          ++L  + G          A +N  E   + L      D+ I +E+
Sbjct: 290 DMSLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPESLDQALLRPGRFDRRIPVEL 349

Query: 170 ADTSSDISNFDIPGGASVGILNLS 193
            D +   +   +  G       ++
Sbjct: 350 PDLTGREAILKLHAGDVRMEPGIN 373


>gi|153008554|ref|YP_001369769.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151560442|gb|ABS13940.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 651

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 166 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 221 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 270


>gi|254420804|ref|ZP_05034528.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           sp. BAL3]
 gi|196186981|gb|EDX81957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           sp. BAL3]
          Length = 767

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+  +L R + GQ+ A   V+ A++         A LRD   P  + L  GPTGVGK
Sbjct: 455 SLRELEVDLKRAVFGQEQAIEQVSAAMK------LARAGLRDPNKPIGSFLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           T ++++LA   G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 TEVAKQLASTLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVDQHPHS 566


>gi|47221159|emb|CAG05480.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 714

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P ++ +    ++ G ++AK   + V   L+N  +   L   L     PK ILLVGP G G
Sbjct: 272 PIQMKNVTFEHVKGVEEAKNELQDVVEFLKNPQKFTVLGGKL-----PKGILLVGPPGTG 326

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF     ++F E+ +VG    +I R+L   A
Sbjct: 327 KTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI-RNLFKEA 369


>gi|241764607|ref|ZP_04762622.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
 gi|241365928|gb|EER60558.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
          Length = 626

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN     +    L    MPK ILLVGP G GKT ++R +A
Sbjct: 172 DDVAGVDEAKAELRESVDFLRNP----KDYGRLGAH-MPKGILLVGPPGTGKTLLARAMA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 227 GEAGVPFFSITGSEFVEM-FVGVGAARV-RDLFEQA 260


>gi|149913689|ref|ZP_01902222.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter
           sp. AzwK-3b]
 gi|149812809|gb|EDM72638.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter
           sp. AzwK-3b]
          Length = 777

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L R + GQ  A  A+A +++         A LR+   P  N L  GPTGVGKT 
Sbjct: 464 KDLERSLKRVVFGQDPAIEALASSIK------LARAGLREPDKPIGNYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|91775521|ref|YP_545277.1| FtsH-2 peptidase [Methylobacillus flagellatus KT]
 gi|91709508|gb|ABE49436.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
          Length = 605

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPQDYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGIGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|119222289|gb|ABL62342.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222291|gb|ABL62343.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222293|gb|ABL62344.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222295|gb|ABL62345.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222297|gb|ABL62346.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222299|gb|ABL62347.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222301|gb|ABL62348.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222303|gb|ABL62349.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222305|gb|ABL62350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222307|gb|ABL62351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222309|gb|ABL62352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222311|gb|ABL62353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222313|gb|ABL62354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222315|gb|ABL62355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222319|gb|ABL62357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222321|gb|ABL62358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222323|gb|ABL62359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222325|gb|ABL62360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222327|gb|ABL62361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222329|gb|ABL62362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222331|gb|ABL62363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222333|gb|ABL62364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222335|gb|ABL62365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222337|gb|ABL62366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222339|gb|ABL62367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222341|gb|ABL62368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222343|gb|ABL62369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222345|gb|ABL62370.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222347|gb|ABL62371.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222349|gb|ABL62372.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222351|gb|ABL62373.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222355|gb|ABL62375.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 149

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 53/147 (36%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  
Sbjct: 4   IVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVA 62

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  ++T +ILFI  GAF                             
Sbjct: 63  NVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRS 122

Query: 305 -----HVSRPADL-----LPEIQGRFP 321
                    P DL     +PE  GR P
Sbjct: 123 LTELLKHVEPEDLLKFGMIPEFIGRLP 149


>gi|281205904|gb|EFA80093.1| peptidase M41 [Polysphondylium pallidum PN500]
          Length = 853

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK  +   +   +N   ++R           +PK  +LVGP G GKT I++ 
Sbjct: 352 KDVAGMDEAKEEIMEFVSFLKNPQKYKRLGA-------KIPKGAILVGPPGTGKTLIAKA 404

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  +G PF  +  + F E+ +VG     V  + ++  + A  IV     D V
Sbjct: 405 TAGESGVPFFTISGSDFIEM-FVGVGPSRVRDLFKEARENAPCIVFIDEIDAV 456


>gi|146098803|ref|XP_001468475.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase [Leishmania
           infantum]
 gi|134072843|emb|CAM71559.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania
           infantum JPCM5]
 gi|322502510|emb|CBZ37593.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 623

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  F F  RE+ VS   + + G  +AK  V      L++  R Q L A L     PK +L
Sbjct: 157 KSRFTFK-REMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVL 210

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A N 
Sbjct: 211 LDGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQRV-RELFREAHNC 264


>gi|89275983|gb|ABD66350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275985|gb|ABD66351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275987|gb|ABD66352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275989|gb|ABD66353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275991|gb|ABD66354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275993|gb|ABD66355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275995|gb|ABD66356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275997|gb|ABD66357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89275999|gb|ABD66358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276001|gb|ABD66359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276003|gb|ABD66360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276005|gb|ABD66361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276007|gb|ABD66362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276009|gb|ABD66363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276011|gb|ABD66364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276013|gb|ABD66365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276015|gb|ABD66366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276017|gb|ABD66367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276019|gb|ABD66368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|89276021|gb|ABD66369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368130|gb|ACF57957.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368132|gb|ACF57958.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368134|gb|ACF57959.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368136|gb|ACF57960.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368138|gb|ACF57961.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368140|gb|ACF57962.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368142|gb|ACF57963.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368146|gb|ACF57965.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368148|gb|ACF57966.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368150|gb|ACF57967.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368152|gb|ACF57968.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368154|gb|ACF57969.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368156|gb|ACF57970.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368158|gb|ACF57971.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|194368160|gb|ACF57972.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 150

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 53/147 (36%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  
Sbjct: 5   IVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVA 63

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  ++T +ILFI  GAF                             
Sbjct: 64  NVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRS 123

Query: 305 -----HVSRPADL-----LPEIQGRFP 321
                    P DL     +PE  GR P
Sbjct: 124 LTELLKHVEPEDLLKFGMIPEFIGRLP 150


>gi|328866875|gb|EGG15258.1| Putative FtsH protease [Dictyostelium fasciculatum]
          Length = 729

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 43/261 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G ++AK   + +   LRN  +  +     R+ + PK ILLVGP G GKT +++ LA
Sbjct: 200 DDVVGAEEAKSELQDLVDYLRNPGKYAE-----RNIVTPKGILLVGPPGTGKTLLAKALA 254

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN--- 129
             A  PFI +  ++F E+  G   + V ++  +   +A  IV     D V    S     
Sbjct: 255 GEARIPFISINGSEFEEMFIGVGAKRVRELFAEARKMAPCIVFIDEIDSVGGSRSKRINY 314

Query: 130 ----AEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVA-DTSSDI 176
               A  ++L  L G T        A +N +E     L      D+ I +++    ++ I
Sbjct: 315 HPSDALNQLLVELDGFTGREGVIVLAATNFQETLDPALVRSGRFDRSIQVQLPDYVNTQI 374

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                PG +   + NL    +       + +I M                   ++    +
Sbjct: 375 LAQSTPGFSGADLFNLVNWAALDTTKNNQPEISME-----------------SLENAKEN 417

Query: 237 SIQMVENYGIVFLDEFDKIVA 257
            I   E + ++  DE  KI A
Sbjct: 418 IIMGKERHSLILTDEARKICA 438


>gi|255526409|ref|ZP_05393322.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296188377|ref|ZP_06856768.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255509915|gb|EET86242.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296046998|gb|EFG86441.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 606

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++AK ++      L    +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 165 NDVAGQEEAKESLNEIVDFLHKPSKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 220 GEANVPFFSLSGSDFVEM-FVGVGASRV-RDLFQQAEKN 256


>gi|188532498|ref|YP_001906295.1| ATP-dependent metalloprotease [Erwinia tasmaniensis Et1/99]
 gi|188027540|emb|CAO95387.1| Cell division protease FtsH [Erwinia tasmaniensis Et1/99]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|82545584|ref|YP_409531.1| ATP-dependent metalloprotease [Shigella boydii Sb227]
 gi|81246995|gb|ABB67703.1| HflB [Shigella boydii Sb227]
 gi|320186665|gb|EFW61389.1| Cell division protein FtsH [Shigella flexneri CDC 796-83]
 gi|332090713|gb|EGI95807.1| cell division protease ftsH [Shigella boydii 3594-74]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 39/285 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V 
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
            Q       R      G      T      ++   E ++  I I     +++  +   P 
Sbjct: 258 RQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI----AATNRPDVLDPA 306

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTV 233
               G  +   +    +   R ++  + V      L  D    +I          D+  +
Sbjct: 307 LLRPGRFDRQVVVG--LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364

Query: 234 HRDSIQMVE--NYGIVFLDEF----DKI---VARDSGNGIGVSRE 269
             ++       N  +V + EF    DKI     R S       +E
Sbjct: 365 VNEAALFAARGNKRVVSMIEFEKAKDKIMMGAERRSMVMTEAQKE 409


>gi|331236648|ref|XP_003330982.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309309972|gb|EFP86563.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 888

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +    +  + P         +PK  ++ GP G GKT +++  A 
Sbjct: 334 KDVAGMDEAKEEIMEFV----KFLKEPEKYERLGAKIPKGAMISGPPGTGKTLLAKATAG 389

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 390 EAGVPFLSVSGSEFVEM-FVGVGPSRV-RDLFATAKKN 425


>gi|259907036|ref|YP_002647392.1| ATP-dependent metalloprotease [Erwinia pyrifoliae Ep1/96]
 gi|224962658|emb|CAX54113.1| Cell division protease FtsH [Erwinia pyrifoliae Ep1/96]
 gi|283476832|emb|CAY72670.1| cell division protein FtsH [Erwinia pyrifoliae DSM 12163]
 gi|310766248|gb|ADP11198.1| ATP-dependent metalloprotease [Erwinia sp. Ejp617]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|108761289|ref|YP_632993.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus
           xanthus DK 1622]
 gi|108465169|gb|ABF90354.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus
           xanthus DK 1622]
          Length = 884

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S L   +IGQ +A R ++ A+R      +  A L+DE  P  + L +GPTGVGKT +
Sbjct: 570 ELESRLHERVIGQDEAIRVLSQAIR------RARAGLKDESRPIGSFLFLGPTGVGKTEL 623

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA L        I+ +++++ E   V R V
Sbjct: 624 AKTLAELLFGDEKALIRFDMSEYMEKHTVSRLV 656



 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 117/340 (34%), Gaps = 61/340 (17%)

Query: 101 QIIRDLVDVAINIVRESRRDEV-REQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159
                 V  A    R  +  E    +A   AE  +L  + G   T  T +  +K L    
Sbjct: 516 NAAEREVQSAQKERRTQKSGETPEVRAEDVAE--VLSRMTGIPVTQMTEDERKKLLELES 573

Query: 160 ISDKEIDIE-----------------VADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
              + +  +                 + D S  I +F   G   VG   L++  ++++  
Sbjct: 574 RLHERVIGQDEAIRVLSQAIRRARAGLKDESRPIGSFLFLGPTGVGKTELAKTLAELLFG 633

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLI---------DMDTVHRDSIQMVENYGIVFLDEFD 253
             K  IR  + +    + +    RL+         +      ++++    Y ++  DE +
Sbjct: 634 DEKALIRFDMSE---YMEKHTVSRLVGAPPGYVGYEEGGQLTEAVRR-RPYSVLLFDEVE 689

Query: 254 K---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT------DHILF 298
           K         +   D G         V      ++  S++ +     +T      + +  
Sbjct: 690 KAHPDVFHMLLQVLDDGRLTDAQGTVVNFKNTVIIGTSNLGSHLIQESTARKEPQERMRE 749

Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358
              G      P    PE   R    V  + LN++  R I+      ++ + + L+  +GI
Sbjct: 750 RVMGVLKGHFP----PEFLNRIDETVVFEPLNRAQLRAIV----DLMLEKTRRLLHGQGI 801

Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398
            L+ T  +++AL D   +        GAR L+  ++R +E
Sbjct: 802 DLEVTPAALEALVDKGWD-----PTFGARPLRREIQRAIE 836


>gi|300980089|ref|ZP_07174839.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|300307863|gb|EFJ62383.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|324012133|gb|EGB81352.1| ATP-dependent metalloprotease [Escherichia coli MS 60-1]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|320174542|gb|EFW49678.1| Cell division protein FtsH [Shigella dysenteriae CDC 74-1112]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 39/285 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V 
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
            Q       R      G      T      ++   E ++  I I     +++  +   P 
Sbjct: 258 RQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI----AATNRPDVLDPA 306

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTV 233
               G  +   +    +   R ++  + V      L  D    +I          D+  +
Sbjct: 307 LLRPGRFDRQVVVG--LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPSFSGADLANL 364

Query: 234 HRDSIQMVE--NYGIVFLDEF----DKI---VARDSGNGIGVSRE 269
             ++       N  +V + EF    DKI     R S       +E
Sbjct: 365 VNEAALFAARGNKRVVSMIEFEKAKDKIMMGAERRSMVMTEAQKE 409


>gi|170766096|ref|ZP_02900907.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
 gi|170125242|gb|EDS94173.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|84501656|ref|ZP_00999828.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
 gi|84390277|gb|EAQ02836.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597]
          Length = 639

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|191172189|ref|ZP_03033732.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
 gi|190907499|gb|EDV67095.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|157875629|ref|XP_001686199.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase
 gi|68129273|emb|CAJ07813.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain
           Friedlin]
          Length = 623

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  F F  RE+ VS   + + G  +AK  V      L++  R Q L A L     PK +L
Sbjct: 157 KSRFTFK-REMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPERYQTLGAKL-----PKGVL 210

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A N 
Sbjct: 211 LDGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQRV-RELFREAHNC 264


>gi|16131068|ref|NP_417645.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24114467|ref|NP_708977.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 301]
 gi|30064516|ref|NP_838687.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 2457T]
 gi|74313715|ref|YP_312134.1| ATP-dependent metalloprotease [Shigella sonnei Ss046]
 gi|89109941|ref|AP_003721.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. W3110]
 gi|91212599|ref|YP_542585.1| ATP-dependent metalloprotease [Escherichia coli UTI89]
 gi|110643418|ref|YP_671148.1| ATP-dependent metalloprotease [Escherichia coli 536]
 gi|110807044|ref|YP_690564.1| ATP-dependent metalloprotease [Shigella flexneri 5 str. 8401]
 gi|117625472|ref|YP_858795.1| ATP-dependent metalloprotease [Escherichia coli APEC O1]
 gi|170018572|ref|YP_001723526.1| ATP-dependent metalloprotease [Escherichia coli ATCC 8739]
 gi|170082713|ref|YP_001732033.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209920653|ref|YP_002294737.1| ATP-dependent metalloprotease [Escherichia coli SE11]
 gi|215488494|ref|YP_002330925.1| ATP-dependent metalloprotease [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550461|ref|YP_002384252.1| ATP-dependent metalloprotease [Escherichia fergusonii ATCC 35469]
 gi|218555748|ref|YP_002388661.1| ATP-dependent metalloprotease [Escherichia coli IAI1]
 gi|218560248|ref|YP_002393161.1| ATP-dependent metalloprotease [Escherichia coli S88]
 gi|218691468|ref|YP_002399680.1| ATP-dependent metalloprotease [Escherichia coli ED1a]
 gi|218696883|ref|YP_002404550.1| ATP-dependent metalloprotease [Escherichia coli 55989]
 gi|218701947|ref|YP_002409576.1| ATP-dependent metalloprotease [Escherichia coli IAI39]
 gi|218706798|ref|YP_002414317.1| ATP-dependent metalloprotease [Escherichia coli UMN026]
 gi|227887899|ref|ZP_04005704.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238902280|ref|YP_002928076.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|254163120|ref|YP_003046228.1| ATP-dependent metalloprotease [Escherichia coli B str. REL606]
 gi|256018903|ref|ZP_05432768.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|256024247|ref|ZP_05438112.1| ATP-dependent metalloprotease [Escherichia sp. 4_1_40B]
 gi|260845991|ref|YP_003223769.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|260857305|ref|YP_003231196.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|260869929|ref|YP_003236331.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|291284552|ref|YP_003501370.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|293416608|ref|ZP_06659247.1| hflB [Escherichia coli B185]
 gi|297520552|ref|ZP_06938938.1| ATP-dependent metalloprotease [Escherichia coli OP50]
 gi|300817569|ref|ZP_07097785.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300823858|ref|ZP_07103982.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300897943|ref|ZP_07116321.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300904365|ref|ZP_07122217.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300918936|ref|ZP_07135494.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300926081|ref|ZP_07141900.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300929870|ref|ZP_07145315.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300938090|ref|ZP_07152867.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300948829|ref|ZP_07162896.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300955764|ref|ZP_07168108.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300990825|ref|ZP_07179352.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|301022033|ref|ZP_07185976.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|301047978|ref|ZP_07195021.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|301301764|ref|ZP_07207898.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|301326397|ref|ZP_07219753.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301644889|ref|ZP_07244860.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|306816480|ref|ZP_07450612.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307139864|ref|ZP_07499220.1| ATP-dependent metalloprotease [Escherichia coli H736]
 gi|309793755|ref|ZP_07688181.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|312968485|ref|ZP_07782694.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312972548|ref|ZP_07786722.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|331643876|ref|ZP_08345007.1| cell division protease FtsH [Escherichia coli H736]
 gi|331648978|ref|ZP_08350066.1| cell division protease FtsH [Escherichia coli M605]
 gi|331654782|ref|ZP_08355782.1| cell division protease FtsH [Escherichia coli M718]
 gi|331659465|ref|ZP_08360407.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331664790|ref|ZP_08365695.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331670005|ref|ZP_08370850.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331679257|ref|ZP_08379929.1| cell division protease FtsH [Escherichia coli H591]
 gi|331684825|ref|ZP_08385417.1| cell division protease FtsH [Escherichia coli H299]
 gi|77416821|sp|P0AAI3|FTSH_ECOLI RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|77416822|sp|P0AAI4|FTSH_SHIFL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|146028|gb|AAA23813.1| ftsH [Escherichia coli str. K-12 substr. W3110]
 gi|606116|gb|AAA57979.1| CG Site No. 735 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789568|gb|AAC76210.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24053649|gb|AAN44684.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 301]
 gi|30042775|gb|AAP18498.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 2457T]
 gi|73857192|gb|AAZ89899.1| degrades sigma32, integral membrane peptidase, cell division
           protein [Shigella sonnei Ss046]
 gi|85675972|dbj|BAE77222.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K12
           substr. W3110]
 gi|91074173|gb|ABE09054.1| ATP-binding protein [Escherichia coli UTI89]
 gi|110345010|gb|ABG71247.1| cell division protein FtsH [Escherichia coli 536]
 gi|110616592|gb|ABF05259.1| ATP-dependent zinc-metallo protease [Shigella flexneri 5 str. 8401]
 gi|115514596|gb|ABJ02671.1| putative ATP-dependent zinc metalloprotease [Escherichia coli APEC
           O1]
 gi|169753500|gb|ACA76199.1| ATP-dependent metalloprotease FtsH [Escherichia coli ATCC 8739]
 gi|169890548|gb|ACB04255.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209758258|gb|ACI77441.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758264|gb|ACI77444.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209913912|dbj|BAG78986.1| cell division protein [Escherichia coli SE11]
 gi|215266566|emb|CAS11005.1| protease, ATP-dependent zinc-metallo [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353615|emb|CAU99811.1| protease, ATP-dependent zinc-metallo [Escherichia coli 55989]
 gi|218358002|emb|CAQ90648.1| protease, ATP-dependent zinc-metallo [Escherichia fergusonii ATCC
           35469]
 gi|218362516|emb|CAR00140.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI1]
 gi|218367017|emb|CAR04788.1| protease, ATP-dependent zinc-metallo [Escherichia coli S88]
 gi|218371933|emb|CAR19789.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI39]
 gi|218429032|emb|CAR09979.2| protease, ATP-dependent zinc-metallo [Escherichia coli ED1a]
 gi|218433895|emb|CAR14812.1| protease, ATP-dependent zinc-metallo [Escherichia coli UMN026]
 gi|222034895|emb|CAP77638.1| Cell division protease ftsH [Escherichia coli LF82]
 gi|227835295|gb|EEJ45761.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238863291|gb|ACR65289.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|242378721|emb|CAQ33511.1| ATP-dependent zinc metalloprotease FtsH, subunit of HflB, integral
           membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli BL21(DE3)]
 gi|253975021|gb|ACT40692.1| protease, ATP-dependent zinc-metallo [Escherichia coli B str.
           REL606]
 gi|253979177|gb|ACT44847.1| protease, ATP-dependent zinc-metallo [Escherichia coli BL21(DE3)]
 gi|257755954|dbj|BAI27456.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|257761138|dbj|BAI32635.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|257766285|dbj|BAI37780.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|281180220|dbj|BAI56550.1| cell division protein [Escherichia coli SE15]
 gi|281602561|gb|ADA75545.1| Cell division protease ftsH [Shigella flexneri 2002017]
 gi|290764425|gb|ADD58386.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|291431964|gb|EFF04947.1| hflB [Escherichia coli B185]
 gi|300300163|gb|EFJ56548.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|300317359|gb|EFJ67143.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300358335|gb|EFJ74205.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300397748|gb|EFJ81286.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|300403688|gb|EFJ87226.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300407045|gb|EFJ90583.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|300413932|gb|EFJ97242.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300417870|gb|EFK01181.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300451685|gb|EFK15305.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300456911|gb|EFK20404.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300462203|gb|EFK25696.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300523626|gb|EFK44695.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300529867|gb|EFK50929.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300842745|gb|EFK70505.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|300846908|gb|EFK74668.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301076795|gb|EFK91601.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|305850045|gb|EFM50504.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307555272|gb|ADN48047.1| cell division protease FtsH [Escherichia coli ABU 83972]
 gi|307625223|gb|ADN69527.1| ATP-dependent metalloprotease [Escherichia coli UM146]
 gi|308122712|gb|EFO59974.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|309703604|emb|CBJ02944.1| cell division protein [Escherichia coli ETEC H10407]
 gi|310334925|gb|EFQ01130.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|312286703|gb|EFR14614.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312947735|gb|ADR28562.1| ATP-dependent metalloprotease [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315257103|gb|EFU37071.1| ATP-dependent metalloprotease [Escherichia coli MS 85-1]
 gi|315288958|gb|EFU48356.1| ATP-dependent metalloprotease [Escherichia coli MS 110-3]
 gi|315294885|gb|EFU54224.1| ATP-dependent metalloprotease [Escherichia coli MS 153-1]
 gi|315297892|gb|EFU57162.1| ATP-dependent metalloprotease [Escherichia coli MS 16-3]
 gi|315617261|gb|EFU97870.1| cell division protease ftsH [Escherichia coli 3431]
 gi|320194663|gb|EFW69293.1| Cell division protein FtsH [Escherichia coli WV_060327]
 gi|320640249|gb|EFX09821.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. G5101]
 gi|320645546|gb|EFX14555.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str.
           493-89]
 gi|320650856|gb|EFX19313.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str. H
           2687]
 gi|320656237|gb|EFX24149.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661927|gb|EFX29335.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666762|gb|EFX33741.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154391|gb|EFZ40592.1| cell division protease ftsH [Escherichia coli EPECa14]
 gi|323162870|gb|EFZ48705.1| cell division protease ftsH [Escherichia coli E128010]
 gi|323165138|gb|EFZ50928.1| cell division protease ftsH [Shigella sonnei 53G]
 gi|323173562|gb|EFZ59191.1| cell division protease ftsH [Escherichia coli LT-68]
 gi|323178646|gb|EFZ64222.1| cell division protease ftsH [Escherichia coli 1180]
 gi|323183132|gb|EFZ68530.1| cell division protease ftsH [Escherichia coli 1357]
 gi|323189201|gb|EFZ74485.1| cell division protease ftsH [Escherichia coli RN587/1]
 gi|323936128|gb|EGB32422.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1520]
 gi|323941722|gb|EGB37901.1| ATP-dependent metallopeptidase HflB [Escherichia coli E482]
 gi|323946968|gb|EGB42984.1| ATP-dependent metallopeptidase HflB [Escherichia coli H120]
 gi|323951303|gb|EGB47178.1| ATP-dependent metallopeptidase HflB [Escherichia coli H252]
 gi|323957675|gb|EGB53389.1| ATP-dependent metallopeptidase HflB [Escherichia coli H263]
 gi|323961167|gb|EGB56781.1| ATP-dependent metallopeptidase HflB [Escherichia coli H489]
 gi|323966358|gb|EGB61792.1| ATP-dependent metallopeptidase HflB [Escherichia coli M863]
 gi|323970259|gb|EGB65530.1| ATP-dependent metallopeptidase HflB [Escherichia coli TA007]
 gi|323979105|gb|EGB74183.1| ATP-dependent metallopeptidase HflB [Escherichia coli TW10509]
 gi|324008749|gb|EGB77968.1| ATP-dependent metalloprotease [Escherichia coli MS 57-2]
 gi|324018297|gb|EGB87516.1| ATP-dependent metalloprotease [Escherichia coli MS 117-3]
 gi|324115218|gb|EGC09182.1| ATP-dependent metallopeptidase HflB [Escherichia fergusonii B253]
 gi|324119543|gb|EGC13425.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1167]
 gi|325498759|gb|EGC96618.1| ATP-dependent metalloprotease [Escherichia fergusonii ECD227]
 gi|327251269|gb|EGE62958.1| cell division protease ftsH [Escherichia coli STEC_7v]
 gi|330909232|gb|EGH37746.1| cell division protein FtsH [Escherichia coli AA86]
 gi|331037347|gb|EGI09571.1| cell division protease FtsH [Escherichia coli H736]
 gi|331042725|gb|EGI14867.1| cell division protease FtsH [Escherichia coli M605]
 gi|331048164|gb|EGI20241.1| cell division protease FtsH [Escherichia coli M718]
 gi|331054047|gb|EGI26076.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331058038|gb|EGI30020.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331062918|gb|EGI34832.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331073322|gb|EGI44645.1| cell division protease FtsH [Escherichia coli H591]
 gi|331078440|gb|EGI49646.1| cell division protease FtsH [Escherichia coli H299]
 gi|332345134|gb|AEE58468.1| cell division protease FtsH [Escherichia coli UMNK88]
 gi|332752337|gb|EGJ82727.1| cell division protease ftsH [Shigella flexneri 4343-70]
 gi|332752863|gb|EGJ83248.1| cell division protease ftsH [Shigella flexneri K-671]
 gi|332754442|gb|EGJ84808.1| cell division protease ftsH [Shigella flexneri 2747-71]
 gi|332765174|gb|EGJ95401.1| ftsH HflB [Shigella flexneri 2930-71]
 gi|332998820|gb|EGK18416.1| cell division protease ftsH [Shigella flexneri VA-6]
 gi|332999256|gb|EGK18842.1| cell division protease ftsH [Shigella flexneri K-272]
 gi|333000055|gb|EGK19638.1| cell division protease ftsH [Shigella flexneri K-218]
 gi|333014604|gb|EGK33951.1| cell division protease ftsH [Shigella flexneri K-304]
 gi|333014979|gb|EGK34323.1| cell division protease ftsH [Shigella flexneri K-227]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|306841410|ref|ZP_07474112.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2]
 gi|306288516|gb|EFM59868.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2]
          Length = 594

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 107 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 161

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 162 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 211


>gi|293449512|ref|ZP_06663933.1| hflB [Escherichia coli B088]
 gi|291322602|gb|EFE62031.1| hflB [Escherichia coli B088]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 638

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)

Query: 1   MKLTFNFSPREIVSELD-----RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELM 52
           M +    S  +I  E D       + GQ +AK ++      L N  +  ++ A L     
Sbjct: 150 MGMGMGKSNAKIYKENDIKITFDDVAGQDEAKESLKEIIDYLNNASKYTEIGAKL----- 204

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK  LLVGP G GKT +++ +A  A  PF+ +  + F E+ + G    ++ RDL   A  
Sbjct: 205 PKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSNFVEM-FAGMGAAKV-RDLFQEAEK 262

Query: 113 I 113
            
Sbjct: 263 N 263


>gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400]
 gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
          Length = 659

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK   + +   LRN  R+RR           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELKQIVEFLRNAERYRRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 258


>gi|332086092|gb|EGI91254.1| cell division protease ftsH [Shigella boydii 5216-82]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|320181453|gb|EFW56371.1| Cell division protein FtsH [Shigella boydii ATCC 9905]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|283836276|ref|ZP_06356017.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
 gi|291067639|gb|EFE05748.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|260596195|ref|YP_003208766.1| ATP-dependent metalloprotease [Cronobacter turicensis z3032]
 gi|260215372|emb|CBA27389.1| Cell division protease ftsH [Cronobacter turicensis z3032]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|157158704|ref|YP_001464653.1| ATP-dependent metalloprotease [Escherichia coli E24377A]
 gi|157162661|ref|YP_001459979.1| ATP-dependent metalloprotease [Escherichia coli HS]
 gi|188491848|ref|ZP_02999118.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|191168060|ref|ZP_03029860.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194430224|ref|ZP_03062722.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|237706070|ref|ZP_04536551.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253771988|ref|YP_003034819.1| ATP-dependent metalloprotease [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038343|ref|ZP_04872401.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|293406787|ref|ZP_06650713.1| hflB [Escherichia coli FVEC1412]
 gi|293412550|ref|ZP_06655273.1| hflB [Escherichia coli B354]
 gi|298382528|ref|ZP_06992125.1| hflB [Escherichia coli FVEC1302]
 gi|301025977|ref|ZP_07189460.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|307313117|ref|ZP_07592743.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|332279991|ref|ZP_08392404.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|746401|gb|AAA97508.1| ATP-binding protein [Escherichia coli]
 gi|157068341|gb|ABV07596.1| ATP-dependent metallopeptidase HflB [Escherichia coli HS]
 gi|157080734|gb|ABV20442.1| ATP-dependent metallopeptidase HflB [Escherichia coli E24377A]
 gi|188487047|gb|EDU62150.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|190901929|gb|EDV61678.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194411725|gb|EDX28049.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|226839967|gb|EEH71988.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|226899110|gb|EEH85369.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253323032|gb|ACT27634.1| ATP-dependent metalloprotease FtsH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447795|gb|ACX38217.1| ATP-dependent metalloprotease FtsH [Escherichia coli DH1]
 gi|284923201|emb|CBG36295.1| cell division protein [Escherichia coli 042]
 gi|291426793|gb|EFE99825.1| hflB [Escherichia coli FVEC1412]
 gi|291469321|gb|EFF11812.1| hflB [Escherichia coli B354]
 gi|294491080|gb|ADE89836.1| ATP-dependent metallopeptidase HflB [Escherichia coli IHE3034]
 gi|298277668|gb|EFI19184.1| hflB [Escherichia coli FVEC1302]
 gi|299879903|gb|EFI88114.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|306907028|gb|EFN37536.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|313648580|gb|EFS13022.1| cell division protease ftsH [Shigella flexneri 2a str. 2457T]
 gi|315062484|gb|ADT76811.1| protease, ATP-dependent zinc-metallo [Escherichia coli W]
 gi|315137764|dbj|BAJ44923.1| hflB [Escherichia coli DH1]
 gi|323376928|gb|ADX49196.1| ATP-dependent metalloprotease FtsH [Escherichia coli KO11]
 gi|332102343|gb|EGJ05689.1| ATP-dependent metalloprotease [Shigella sp. D9]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|82778492|ref|YP_404841.1| ATP-dependent metalloprotease [Shigella dysenteriae Sd197]
 gi|309785506|ref|ZP_07680137.1| cell division protease ftsH [Shigella dysenteriae 1617]
 gi|81242640|gb|ABB63350.1| HflB [Shigella dysenteriae Sd197]
 gi|308926626|gb|EFP72102.1| cell division protease ftsH [Shigella dysenteriae 1617]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|15803718|ref|NP_289752.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 EDL933]
 gi|15833311|ref|NP_312084.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. Sakai]
 gi|195938397|ref|ZP_03083779.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           EC4024]
 gi|209399479|ref|YP_002272648.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327622|ref|ZP_03443705.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795127|ref|YP_003079964.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228189|ref|ZP_05942470.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255045|ref|ZP_05947578.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|20138203|sp|Q8X9L0|FTSH_ECO57 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12517790|gb|AAG58312.1|AE005546_6 degrades sigma32, integral membrane peptidase, cell division
           protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363530|dbj|BAB37480.1| cell division protein HflB/FtsH protease [Escherichia coli O157:H7
           str. Sakai]
 gi|209160879|gb|ACI38312.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209758260|gb|ACI77442.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758262|gb|ACI77443.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758266|gb|ACI77445.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|217319989|gb|EEC28414.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594527|gb|ACT73888.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. TW14359]
 gi|320189531|gb|EFW64190.1| Cell division protein FtsH [Escherichia coli O157:H7 str. EC1212]
 gi|326337878|gb|EGD61712.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1125]
 gi|326347448|gb|EGD71173.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1044]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|327313952|ref|YP_004329389.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
 gi|326944304|gb|AEA20189.1| ATP-dependent metallopeptidase HflB [Prevotella denticola F0289]
          Length = 665

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 31/178 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LL+GP G GKT +++ +A
Sbjct: 181 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLIGPPGTGKTLLAKAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  + R   + +  I+     D V R ++   A
Sbjct: 236 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSKNPA 294

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               +ER      +L  + G    S        N  ++  K L      D++I +++ 
Sbjct: 295 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 352


>gi|326576915|gb|EGE26821.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis O35E]
          Length = 766

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|326560255|gb|EGE10643.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 7169]
 gi|326566427|gb|EGE16577.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC1]
          Length = 766

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|325853892|ref|ZP_08171408.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
 gi|325484229|gb|EGC87159.1| ATP-dependent metallopeptidase HflB [Prevotella denticola CRIS
           18C-A]
          Length = 676

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 31/178 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LL+GP G GKT +++ +A
Sbjct: 192 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLIGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  + R   + +  I+     D V R ++   A
Sbjct: 247 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFRQAKEKSPCIIFIDEIDAVGRARSKNPA 305

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               +ER      +L  + G    S        N  ++  K L      D++I +++ 
Sbjct: 306 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLP 363


>gi|168061955|ref|XP_001782950.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665568|gb|EDQ52248.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 872

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGP 61
              S ++    + + + G  +AK+ +   +    N  + Q+L A +     PK  LLVGP
Sbjct: 358 TKLSKKQKDKVMFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKI-----PKGALLVGP 412

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT +++  A  AG PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 413 PGTGKTLLAKATAGEAGVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 459


>gi|157148747|ref|YP_001456066.1| ATP-dependent metalloprotease [Citrobacter koseri ATCC BAA-895]
 gi|157085952|gb|ABV15630.1| hypothetical protein CKO_04579 [Citrobacter koseri ATCC BAA-895]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|326563660|gb|EGE13912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 103P14B1]
 gi|326573268|gb|EGE23236.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 101P30B1]
          Length = 766

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
 gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
          Length = 604

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKKN 246


>gi|187731936|ref|YP_001881907.1| ATP-dependent metalloprotease [Shigella boydii CDC 3083-94]
 gi|187428928|gb|ACD08202.1| ATP-dependent metallopeptidase HflB [Shigella boydii CDC 3083-94]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 39/285 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V 
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 260

Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
            Q       R      G      T      ++   E ++  I I     +++  +   P 
Sbjct: 261 RQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI----AATNRPDVLDPA 309

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTV 233
               G  +   +    +   R ++  + V      L  D    +I          D+  +
Sbjct: 310 LLRPGRFDRQVVVG--LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPSFSGADLANL 367

Query: 234 HRDSIQMVE--NYGIVFLDEF----DKI---VARDSGNGIGVSRE 269
             ++       N  +V + EF    DKI     R S       +E
Sbjct: 368 VNEAALFAARGNKRVVSMIEFEKAKDKIMMGAERRSMVMTEAQKE 412


>gi|182678216|ref|YP_001832362.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634099|gb|ACB94873.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 617

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 36/225 (16%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   R V   L    + QQ    L    +PK ILLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEEAKFELREVVSFL----KDQQSYGRLGA-RVPKGILLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ +VG    ++ RDL + A            R+ A        L
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RKAAPCIIFIDEL 263

Query: 136 DAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           DAL       G        +   + L + +  D  + + +   ++     D P     G 
Sbjct: 264 DALGRSRTVGGFGGYDEKEQTLNQLLAELDGFDPSVGVILLAATNRPEVLD-PALLRAGR 322

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +   L  +   +GR   +++ ++K          D+ +D+D V 
Sbjct: 323 FDRQVLVDRPDRTGRLAILQVHIRKIR-------LDKDVDLDKVA 360


>gi|170738633|ref|YP_001767288.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46]
 gi|168192907|gb|ACA14854.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46]
          Length = 640

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 247


>gi|297563885|ref|YP_003682858.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848334|gb|ADH70352.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 685

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+   +     + G  +A   +      L+N  + Q + A +     PK +LL
Sbjct: 155 KLITKDTPKNTFA----DVAGADEAIEELHEIKEFLQNPAKFQAMGAKI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 206 MGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|237730098|ref|ZP_04560579.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
 gi|226908704|gb|EEH94622.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|58039079|ref|YP_191043.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
 gi|58001493|gb|AAW60387.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
          Length = 771

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A+A A++              E    N L  GPTGVGKT
Sbjct: 454 TLRHLERDLRNMVFGQDKAIDALAAAIK-----LSRAGLRDAEKPIGNYLFSGPTGVGKT 508

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA   G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 509 EVAKQLANSLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 564


>gi|224031915|gb|ACN35033.1| unknown [Zea mays]
          Length = 463

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K  F   P   V+ LD  + G   AK   + V   L+N  +   L A +     PK  LL
Sbjct: 7   KSKFQEVPETGVTFLD--VAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLL 59

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGP G GKT ++R +A  AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 60  VGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 109


>gi|326562899|gb|EGE13186.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 46P47B1]
 gi|326565260|gb|EGE15445.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis 12P80B1]
          Length = 766

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|270265053|ref|ZP_06193316.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
 gi|270040987|gb|EFA14088.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
          Length = 646

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|224064564|ref|XP_002192889.1| PREDICTED: spastic paraplegia 7 [Taeniopygia guttata]
          Length = 777

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 29/187 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+N  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 291 KDVAGMHEAKMEVKEFVDYLKNPDRYLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 345

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS----- 127
             A  PF+ +  ++F E+  G     V  + R+    A  IV     D V ++ S     
Sbjct: 346 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSG 405

Query: 128 -INAEER-----ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
             NAEE      +L  + G          A++N  +V    L      D+ I I++    
Sbjct: 406 FANAEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQ 465

Query: 174 SDISNFD 180
                F+
Sbjct: 466 ERKEIFE 472


>gi|189010325|ref|ZP_03006283.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401894|ref|ZP_03006511.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403307|ref|ZP_03007035.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404776|ref|ZP_03007576.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208814269|ref|ZP_03255598.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820312|ref|ZP_03260632.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
 gi|189001000|gb|EDU69986.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358414|gb|EDU76833.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361490|gb|EDU79909.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374008|gb|EDU92424.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208735546|gb|EDZ84233.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740435|gb|EDZ88117.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|60302706|ref|NP_001012545.1| spastic paraplegia 7 [Gallus gallus]
 gi|60099097|emb|CAH65379.1| hypothetical protein RCJMB04_24l18 [Gallus gallus]
          Length = 768

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 29/187 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+N  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 282 KDVAGMHEAKMEVKEFVDYLKNPDRYLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 336

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS----- 127
             A  PF+ +  ++F E+  G     V  + R+    A  IV     D V ++ S     
Sbjct: 337 TEAQVPFLAMAGSEFVEVIGGIGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSG 396

Query: 128 -INAEER-----ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
             NAEE      +L  + G          A++N  +V    L      D+ I I++    
Sbjct: 397 FANAEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQ 456

Query: 174 SDISNFD 180
                F+
Sbjct: 457 ERREIFE 463


>gi|157368730|ref|YP_001476719.1| ATP-dependent metalloprotease [Serratia proteamaculans 568]
 gi|157320494|gb|ABV39591.1| ATP-dependent metalloprotease FtsH [Serratia proteamaculans 568]
          Length = 643

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|78043977|ref|YP_359086.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996092|gb|ABB14991.1| cell division protein FtsH [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 619

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 113/308 (36%), Gaps = 51/308 (16%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +A  +   +N  +  +L A +     PK +LL G  G GKT ++R +A 
Sbjct: 159 DVAGIDEVKEELAEIVEFLKNPRKYNELGARI-----PKGVLLFGQPGTGKTLLARAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQ------ 125
            AG PF  +  + F E+ +VG    ++ RDL +     A  IV     D V  Q      
Sbjct: 214 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLG 271

Query: 126 -ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 E+ +   LV              A +N  ++    L      D+ I ++  D +
Sbjct: 272 GGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDRHIVVDTPDIN 331

Query: 174 SDISNFDIP-GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                  +   G  +G     ++ ++         +   V +    L    + ++I+M+ 
Sbjct: 332 GRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAA-LLAARRNKKVINMEE 390

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292
           +  ++I+ V             I   +  + +   RE   + L+   E       Y   +
Sbjct: 391 M-EEAIERV-------------IAGPEKKSKVISERE---KRLVAYHEAGHAMVGYLLPH 433

Query: 293 TDHILFIA 300
           TD +  I+
Sbjct: 434 TDPVHKIS 441


>gi|326575833|gb|EGE25756.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis CO72]
          Length = 766

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|258645726|ref|ZP_05733195.1| cell division protein FtsH [Dialister invisus DSM 15470]
 gi|260403095|gb|EEW96642.1| cell division protein FtsH [Dialister invisus DSM 15470]
          Length = 628

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +A     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 155 DVAGEDEAKEELAEVVDFLKNPGRYTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRV-RDLFAQAKKN 245


>gi|194735810|ref|YP_002116244.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301021|ref|ZP_02663053.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|200387470|ref|ZP_03214082.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|194711312|gb|ACF90533.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289144|gb|EDY28513.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604568|gb|EDZ03113.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 309 PEEIHVTFDD-VKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 362

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 363 KTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 405


>gi|170682536|ref|YP_001745450.1| ATP-dependent metalloprotease [Escherichia coli SMS-3-5]
 gi|170520254|gb|ACB18432.1| ATP-dependent metallopeptidase HflB [Escherichia coli SMS-3-5]
          Length = 647

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|150864081|ref|XP_001382776.2| Mitochondrial respiratory chain complexes assembly protein RCA1
           (TAT-binding homolog 12) [Scheffersomyces stipitis CBS
           6054]
 gi|149385337|gb|ABN64747.2| Mitochondrial respiratory chain complexes assembly protein RCA1
           (TAT-binding homolog 12) [Scheffersomyces stipitis CBS
           6054]
          Length = 867

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           R + G  +AK  V   +    +  Q P         +P+  +L GP G GKT ++R  A 
Sbjct: 390 RDVAGMAEAKEEVMEFV----KFLQNPEKYERLGAKIPRGAILSGPPGTGKTLLARATAG 445

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 446 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 478


>gi|317484643|ref|ZP_07943546.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
 gi|316924117|gb|EFV45300.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6]
          Length = 650

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++     L N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 154 DDVAGVDEAKEELSEVVDFLSNPRKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAV 258


>gi|241206180|ref|YP_002977276.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860070|gb|ACS57737.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 648

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 163 EDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 267


>gi|326625046|gb|EGE31391.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 578

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +  P+   S     + G  +AK  +   +   + R           +PK +LLVGP G G
Sbjct: 139 DLKPQMNSSTRFADVKGVDEAKHELEEIVE--YLRDPHKFTGLGGKLPKGVLLVGPPGTG 196

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT ++R +A  AG PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 197 KTMLARAIAGEAGVPFFYTSGSEFEEV-FVGVGARRV-RDLFAAAKKH 242


>gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1]
 gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1]
          Length = 604

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKKN 246


>gi|119222317|gb|ABL62356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
 gi|119222353|gb|ABL62374.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 149

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 53/147 (36%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  
Sbjct: 4   IVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVA 62

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  ++T +ILFI  GAF                             
Sbjct: 63  NVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGAEVQSKKQRS 122

Query: 305 -----HVSRPADL-----LPEIQGRFP 321
                    P DL     +PE  GR P
Sbjct: 123 LTELLKHVEPEDLLKFGMIPEFIGRLP 149


>gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 676

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 13  VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                  + G  + K  ++     L+N  +   + A +     PK +LL GP G GKT +
Sbjct: 167 KRFTFSDVAGADEEKEEMSELIDFLKNPRKYAAMGARI-----PKGVLLYGPPGTGKTLL 221

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ 125
           ++ +A  AG PF     + F E+ YVG    ++ RDL       A  IV     + V  +
Sbjct: 222 AKAVAGEAGVPFFAASGSDFDEV-YVGVGASRV-RDLFKEAQLAAPCIVFIDEIEAVARK 279


>gi|33240787|ref|NP_875729.1| cell division protein FtsH3 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238316|gb|AAQ00382.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 621

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  +R Q  +D+   + PK +LLVGP G GKT +S+ +A  A
Sbjct: 170 DDVAGVDEAKDELTEIV-DFLKRPQRYSDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 228 EVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|16762058|ref|NP_457675.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766592|ref|NP_462207.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143547|ref|NP_806889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415225|ref|YP_152300.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161506141|ref|YP_001573253.1| ATP-dependent metalloprotease [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616303|ref|YP_001590268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197364155|ref|YP_002143792.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205354197|ref|YP_002227998.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858544|ref|YP_002245195.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052988|ref|ZP_03345866.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425426|ref|ZP_03358176.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852786|ref|ZP_03382318.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224585091|ref|YP_002638890.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910089|ref|ZP_04653926.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825807|ref|ZP_06544975.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|54037122|sp|P63344|FTSH_SALTI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|54040797|sp|P63343|FTSH_SALTY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|25308063|pir||AG0902 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421854|gb|AAL22166.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504361|emb|CAD07813.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139181|gb|AAO70749.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56129482|gb|AAV78988.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|160867488|gb|ABX24111.1| hypothetical protein SARI_04329 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365667|gb|ABX69435.1| hypothetical protein SPAB_04111 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197095632|emb|CAR61200.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273978|emb|CAR38984.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710347|emb|CAR34705.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469619|gb|ACN47449.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248461|emb|CBG26298.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995493|gb|ACY90378.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159845|emb|CBW19364.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914320|dbj|BAJ38294.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087740|emb|CBY97504.1| cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225979|gb|EFX51033.1| Cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615299|gb|EFY12220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618342|gb|EFY15233.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622853|gb|EFY19697.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626825|gb|EFY23622.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631394|gb|EFY28154.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635339|gb|EFY32053.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643338|gb|EFY39902.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647090|gb|EFY43591.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648893|gb|EFY45338.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655085|gb|EFY51396.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657688|gb|EFY53956.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664184|gb|EFY60382.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667467|gb|EFY63629.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674715|gb|EFY70807.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675652|gb|EFY71725.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682288|gb|EFY78311.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684891|gb|EFY80889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131655|gb|ADX19085.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323199021|gb|EFZ84118.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204279|gb|EFZ89288.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207626|gb|EFZ92573.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211321|gb|EFZ96165.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214737|gb|EFZ99486.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221217|gb|EGA05643.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224042|gb|EGA08335.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230309|gb|EGA14428.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233285|gb|EGA17379.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239322|gb|EGA23372.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242427|gb|EGA26453.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246937|gb|EGA30903.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254130|gb|EGA37950.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255247|gb|EGA39024.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262710|gb|EGA46266.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264020|gb|EGA47528.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269406|gb|EGA52861.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326629318|gb|EGE35661.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990153|gb|AEF09136.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 644

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|257453455|ref|ZP_05618750.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter
           aerosaccus SK60]
 gi|257449207|gb|EEV24155.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter
           aerosaccus SK60]
          Length = 819

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S L   + GQ +A + +A A++             D+    + +  GPTGVGKT +
Sbjct: 514 QNLESNLKHLVFGQDEAIKNLADAIK-----LSRAGLKPDDKPIGSFMFAGPTGVGKTEV 568

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G   ++ +++++ E            GYVG +   ++ + ++   + 
Sbjct: 569 SRQLANLLGIELVRFDMSEYMEAHTASRLIGAPPGYVGFDQGGLLTEKINQFPHC 623


>gi|255079830|ref|XP_002503495.1| predicted protein [Micromonas sp. RCC299]
 gi|226518762|gb|ACO64753.1| predicted protein [Micromonas sp. RCC299]
          Length = 1184

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 91/255 (35%), Gaps = 35/255 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
           +P  +LL GP G GKT ++R LA  AG PF     T+F E+ +VG    +I R+L + A 
Sbjct: 557 IPMGVLLCGPPGTGKTLLARCLAGEAGVPFFACAGTEFMEM-FVGVGAARI-RNLFNQAR 614

Query: 111 ---INIVRESRRDEVREQASINA-----------EERILDALVGKTATS--------NTR 148
                I+     D V  +    A             ++L  + G    S        N  
Sbjct: 615 KCRPCIIFIDEFDSVAVRRKDAAAMEGNDEQVATINQLLTEMDGFGGNSGVMVFAATNRP 674

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
            V    L      D+ I++ + +  + +   D+     V    +       +     ++ 
Sbjct: 675 HVIDPALIRPGRFDRVIEMPLPNREARMDIIDLHCSYQVFEGMIDPDLDVALI---ARQC 731

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGV 266
                     L+R  + R  +  T+ RD     +    VFLD  D+I   +     G G 
Sbjct: 732 AGFTGADLENLVRTAAQR--NSATLKRDRKPAGDR---VFLDVIDEIRRSNVFKATGQGT 786

Query: 267 SREGVQRDLLPLVEG 281
             E        L++ 
Sbjct: 787 VGETDDTTENALIQQ 801


>gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
 gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
          Length = 608

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKKN 250


>gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
 gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
          Length = 671

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G ++A   +      L+N  + Q L A +     PK +LL
Sbjct: 160 KMITKDTPKTTFA----DVAGAEEAVEELHEIKDFLQNPAKYQALGAKI-----PKGVLL 210

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 211 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 260


>gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
 gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
          Length = 608

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKKN 250


>gi|125980157|ref|XP_001354111.1| GA19652 [Drosophila pseudoobscura pseudoobscura]
 gi|195171042|ref|XP_002026320.1| GL24707 [Drosophila persimilis]
 gi|54641099|gb|EAL29850.1| GA19652 [Drosophila pseudoobscura pseudoobscura]
 gi|194111215|gb|EDW33258.1| GL24707 [Drosophila persimilis]
          Length = 818

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 25/212 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI     + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT 
Sbjct: 313 PTEIGVRF-KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTL 369

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D V R+
Sbjct: 370 LAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRK 428

Query: 125 QA---------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDI 167
           +            N   ++L  + G          A +N  ++  K L      D++I +
Sbjct: 429 RGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYV 488

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKV 199
              D     S F +  G     L+ ++L  K+
Sbjct: 489 PAPDIKGRASIFKVHLGGLKAELDKNDLARKM 520


>gi|326570235|gb|EGE20280.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC8]
          Length = 766

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|296113265|ref|YP_003627203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis RH4]
 gi|295920959|gb|ADG61310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis RH4]
          Length = 766

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|194368144|gb|ACF57964.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus]
          Length = 150

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 53/147 (36%)

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSV 284
           ++++       I+  +  GIV++DE DKI  +     I   VS EGVQ+ LL L+EG+  
Sbjct: 5   IVNLLQAADHDIERAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVA 63

Query: 285 ST-----------KYGSINTDHILFIASGAF----------------------------- 304
           +            ++  ++T +ILFI  GAF                             
Sbjct: 64  NVPPKGGRKHPQQEFLQVDTTNILFICGGAFGGLDQVIERRMGGRSLGFGAEVQSKKQRS 123

Query: 305 -----HVSRPADL-----LPEIQGRFP 321
                    P DL     +PE  GR P
Sbjct: 124 LTELLKHVEPEDLLKFGMIPEFIGRLP 150


>gi|114704885|ref|ZP_01437793.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506]
 gi|114539670|gb|EAU42790.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506]
          Length = 832

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A  A+A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 462 LDTQLKRVVYGQDQAIEALASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 515

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 516 KQLASTLGVEILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|17865457|sp|O82150|FTSH_TOBAC RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; AltName: Full=DS9; Flags: Precursor
 gi|5804782|dbj|BAA33755.2| chloroplast FtsH protease [Nicotiana tabacum]
          Length = 714

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 37/268 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 254 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 308

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF     ++F E+ +VG     V  +       A  IV     D V R++      
Sbjct: 309 EAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGG 367

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G +  S        N  +V    L      D+++ ++  D + 
Sbjct: 368 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 427

Query: 175 DISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            I    +         ++  E  ++         ++  + +    L      + I  D +
Sbjct: 428 RIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAA-ILAARRELKEISKDEI 486

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVA 257
             D+++ +    E    V  DE  K+VA
Sbjct: 487 S-DALERIIAGPEKKNAVVSDEKKKLVA 513


>gi|330993781|ref|ZP_08317713.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1]
 gi|329759049|gb|EGG75561.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1]
          Length = 775

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A+  A++              E    N L  GPTGVGKT
Sbjct: 455 TLRSLERDLKGMVYGQDKAIEALTAAIK-----LSRAGLRDPEKPIGNYLFSGPTGVGKT 509

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA   G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 510 EVAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 565


>gi|320202092|gb|EFW76667.1| Cell division protein FtsH [Escherichia coli EC4100B]
          Length = 555

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 53  LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 109

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 110 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 167


>gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 625

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 16/116 (13%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G+ +AK  +   +      N+++            MPK ILLVGP G GKT +++ 
Sbjct: 172 KDVAGEDEAKENLQEIVNYLHDPNQYKSIGA-------TMPKGILLVGPPGTGKTMLAKA 224

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +A  +  PFI +  ++F E+ +VG     V  + +   + A  IV     D V  +
Sbjct: 225 VAGESNVPFISISGSEFIEM-FVGMGASKVRDLFKKAKEKAPCIVFIDEIDAVGGK 279


>gi|225387885|ref|ZP_03757649.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme
           DSM 15981]
 gi|225046012|gb|EEG56258.1| hypothetical protein CLOSTASPAR_01655 [Clostridium asparagiforme
           DSM 15981]
          Length = 797

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 172 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 227 GEAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFKNA 260


>gi|198242374|ref|YP_002217268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936890|gb|ACH74223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 647

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|62181804|ref|YP_218221.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194442507|ref|YP_002042552.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447870|ref|YP_002047324.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471603|ref|ZP_03077587.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195873641|ref|ZP_02697399.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197248059|ref|YP_002148220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205357195|ref|ZP_02345811.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205358490|ref|ZP_02656962.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359196|ref|ZP_02668061.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205359745|ref|ZP_02831638.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360607|ref|ZP_02684667.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|62129437|gb|AAX67140.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401170|gb|ACF61392.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406174|gb|ACF66393.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457967|gb|EDX46806.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633776|gb|EDX52190.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211762|gb|ACH49159.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205323245|gb|EDZ11084.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333758|gb|EDZ20522.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337763|gb|EDZ24527.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343557|gb|EDZ30321.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348591|gb|EDZ35222.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322716291|gb|EFZ07862.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 647

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|254466957|ref|ZP_05080368.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
 gi|206687865|gb|EDZ48347.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales
           bacterium Y4I]
          Length = 637

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|197264149|ref|ZP_03164223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242404|gb|EDY25024.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 647

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila]
          Length = 697

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 95/272 (34%), Gaps = 39/272 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LL+GP G GKT +++ +A  A
Sbjct: 229 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLIGPPGTGKTLLAKAIAGEA 286

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 287 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 345

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 346 DEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRT 405

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S                  +    P     +   L++   +   
Sbjct: 406 DILKVHAGNKKFENDVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 450

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
                        D  D+IVA   G  +  S+
Sbjct: 451 RRGKTAIASKEIDDSIDRIVAGMEGTVMTDSK 482


>gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
 gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268]
          Length = 649

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-R-NR---WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G+ +AK  +   +   N    + R           +PK  LLVGP G GKT +++ 
Sbjct: 196 KDVAGEDEAKELLTEMVDYLNHPDKYSRIGA-------KIPKGALLVGPPGTGKTMLAKA 248

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  ++F E+ YVG    ++ RDL D A
Sbjct: 249 VAGEAGVPFFSISGSEFVEM-YVGMGAAKV-RDLFDQA 284


>gi|56697937|ref|YP_168308.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3]
 gi|56679674|gb|AAV96340.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3]
          Length = 639

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 211 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 260


>gi|317493620|ref|ZP_07952041.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918563|gb|EFV39901.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 648

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R           +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLRDPSRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 36/276 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +     R  L        +P+ +LL GP G GKT +++ +A  A
Sbjct: 64  DDVQGVDEAKEELVEIV--SCLRGSLNYKKLGARLPRGVLLAGPPGTGKTLLAKAVAGEA 121

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
           G PF  V  ++F E+ +VGR   ++ RDL   A            +E A        LDA
Sbjct: 122 GIPFFSVSASEFVEM-FVGRGAARV-RDLFKEA------------KEAAPSIIFIDELDA 167

Query: 138 LVGKTATS---NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVGIL 190
           + G    S      +   + L + +  D ++ + V   ++     D     PG  S  + 
Sbjct: 168 VGGSRGRSFNDERDQTLNQLLTEMDGFDSDVKVIVMAATNRPKALDSALCRPGRFSRKVF 227

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD---RLI--DMDTVHRDSIQMVENYG 245
                             ++ +++    +    ++    L+  D+  +  ++  +    G
Sbjct: 228 VGVPDLEGRRKILAVHLRKVPLEEDSEIICDLVANVTPGLVGADLANIVNEAALLAARRG 287

Query: 246 IVFL---DEFDKIVA-----RDSGNGIGVSREGVQR 273
              +   D  D I            G   +REG+ +
Sbjct: 288 GDIVAREDIMDAIEREKYRVNGRQKGPDSAREGLTK 323


>gi|320540171|ref|ZP_08039826.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
 gi|320029837|gb|EFW11861.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
          Length = 641

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 156 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 213

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|150004472|ref|YP_001299216.1| metalloprotease FtsH [Bacteroides vulgatus ATCC 8482]
 gi|149932896|gb|ABR39594.1| AAA-metalloprotease FtsH with ATPase domain [Bacteroides vulgatus
           ATCC 8482]
          Length = 668

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ +AK+ V   +   + RQ          +PK  LLVGP G GKT +++ +A  A
Sbjct: 190 KDVAGQAEAKQEVEEIVE--FLRQPQKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  + F E+ +VG     V  + R   + A  I+     D V R +        
Sbjct: 248 DVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNPSMGG 306

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                N   ++L  + G  + S        N  ++  K L      D++I +++ D +  
Sbjct: 307 NDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVDLPDLNER 366

Query: 176 ISNFDIP 182
              F + 
Sbjct: 367 KEVFGVH 373


>gi|222149667|ref|YP_002550624.1| metalloprotease [Agrobacterium vitis S4]
 gi|221736649|gb|ACM37612.1| metalloprotease [Agrobacterium vitis S4]
          Length = 681

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 197 EDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 251

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 252 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 301


>gi|209550772|ref|YP_002282689.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536528|gb|ACI56463.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 643

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 EDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|120406320|ref|YP_956149.1| ATP-dependent metalloprotease FtsH [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959138|gb|ABM16143.1| membrane protease FtsH catalytic subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 781

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|116253705|ref|YP_769543.1| cell division protein FtsH [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258353|emb|CAK09455.1| putative cell division protein FtsH [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 643

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 EDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|325282894|ref|YP_004255435.1| ATPase AAA-2 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324314703|gb|ADY25818.1| ATPase AAA-2 domain protein [Deinococcus proteolyticus MRP]
          Length = 755

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 18/113 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           + S+L   + GQ  A  AVA A++         A LRD   P+ + L  GPTGVGKT ++
Sbjct: 453 LESDLAARVFGQDKAVEAVASAVK------LARAGLRDPQKPQGMFLFAGPTGVGKTELA 506

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           R LA   G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 507 RALADRLGVELIRFDMSEYGEAHTVARLIGAPPGYVGFDQGGLLTDAVAKNPH 559


>gi|323191862|gb|EFZ77110.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 625

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 123 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 179

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 180 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 237


>gi|284043135|ref|YP_003393475.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
 gi|310943084|sp|D3F124|FTSH1_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|283947356|gb|ADB50100.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
          Length = 653

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +A   +      L N  + Q L A +     PK +LL GP G GKT ++R +A
Sbjct: 158 RDVAGADEAVEELHEIKEFLENPKKFQALGARI-----PKGVLLYGPPGTGKTLLARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRVRDLFEQAKQNAPCIIFMDEIDAV 262


>gi|114765727|ref|ZP_01444825.1| ATP-dependent metalloprotease FtsH [Pelagibaca bermudensis
           HTCC2601]
 gi|114541944|gb|EAU44979.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. HTCC2601]
          Length = 637

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|322436274|ref|YP_004218486.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9]
 gi|321164001|gb|ADW69706.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9]
          Length = 639

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 29/265 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +   + R+          +PK +LLVGP G GKT ++R +A  A
Sbjct: 156 KDVAGVDEAKEELKEIIE--FLRESQKFQKLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA------ 126
             PF  +  + F E+ +VG    ++ RDL +     A  I+     D V R +       
Sbjct: 214 NVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGG 271

Query: 127 ---SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  + G  A         +N  +V    L      D+ + ++  D    
Sbjct: 272 HDEREQTLNQLLVEMDGFEANDGVILVAATNRPDVLDPALLRPGRFDRRVIVDRPDIKGR 331

Query: 176 ISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCY--PELMRDESDRLIDMDT 232
                +         +++  + ++         +   V +          ++  + D +T
Sbjct: 332 EEVLRVHSKKVPMSEDVNLNVLARGTPGFSGADLANMVNEAALTAARFNRKAVHMFDFET 391

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVA 257
                +   E   ++  DE  K+ A
Sbjct: 392 AKDKVMMGAERKSMLLSDEEKKVTA 416


>gi|255020027|ref|ZP_05292100.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970556|gb|EET28045.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 750

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   I GQ  A R ++ A++              E    + L  GPTGVGKT +
Sbjct: 447 KNLERDLSLVIFGQDRAIRELSAAIK-----MARAGLRHHEKPVGSFLFAGPTGVGKTEL 501

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           SR+LA L G P ++ +++++ E            GYVG +    + + V+   +
Sbjct: 502 SRQLATLLGIPLLRFDMSEYMERHTVSRLIGAPPGYVGYDQSGQLTEAVNQHPH 555


>gi|15021761|gb|AAK77908.1|AF397903_1 AAA-metalloprotease FtsH [Pisum sativum]
          Length = 810

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 324 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 378

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +  +
Sbjct: 379 GESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRK 431


>gi|194332970|ref|YP_002014830.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
 gi|194310788|gb|ACF45183.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
          Length = 699

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 184 LYENLDEHTRITFKDVAGLDEAKGEVMEVVDFLKDPKKYTKLGGKL-----PKGVLLVGP 238

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + R   + A  I+    
Sbjct: 239 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFRQAKEKAPCIIFIDE 297

Query: 119 RDEV 122
            D V
Sbjct: 298 IDAV 301


>gi|326491845|dbj|BAJ98147.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511657|dbj|BAJ91973.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326513078|dbj|BAK03446.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326523821|dbj|BAJ93081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 811

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 323 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 377

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +IV     D +
Sbjct: 378 GESGVPFMSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427


>gi|325000127|ref|ZP_08121239.1| membrane protease FtsH catalytic subunit [Pseudonocardia sp. P1]
          Length = 846

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 169 DVAGADEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|167748114|ref|ZP_02420241.1| hypothetical protein ANACAC_02858 [Anaerostipes caccae DSM 14662]
 gi|167652106|gb|EDR96235.1| hypothetical protein ANACAC_02858 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQQ+AK ++      L +  +  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 183 DVAGQQEAKESLTEMVDFLHHPDKYLKIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 237

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 EANVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 270


>gi|189499094|ref|YP_001958564.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
 gi|189494535|gb|ACE03083.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
          Length = 686

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 175 LYENLDEHTRITFKDVAGLDEAKAEVMEVVGFLKDPKKYTKLGGKL-----PKGVLLVGP 229

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + R+  + A  I+    
Sbjct: 230 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFREAKEKAPCIIFIDE 288

Query: 119 RDEV 122
            D V
Sbjct: 289 IDAV 292


>gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
 gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269]
          Length = 678

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 197 KDVAGQAGAKQEVQEIVEFLKNPKKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 251

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  + F E+ +VG     V  +     + A  I+     D V R ++    
Sbjct: 252 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKAPCIIFIDEIDAVGRARSKNPS 310

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                   N    +L  + G    S        N  ++  K L      D++I++++ D 
Sbjct: 311 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRADMLDKALLRAGRFDRQINVDLPDL 370

Query: 173 SSDISNFDIP 182
                 F + 
Sbjct: 371 QERKEIFQVH 380


>gi|254475383|ref|ZP_05088769.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
 gi|214029626|gb|EEB70461.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11]
          Length = 639

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|50119646|ref|YP_048813.1| ATP-dependent metalloprotease [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610172|emb|CAG73612.1| cell division protein [Pectobacterium atrosepticum SCRI1043]
          Length = 645

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +P  IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPSGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|86139142|ref|ZP_01057712.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193]
 gi|85823986|gb|EAQ44191.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193]
          Length = 640

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|84516648|ref|ZP_01004007.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53]
 gi|84509684|gb|EAQ06142.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53]
          Length = 631

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 147 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 201

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 202 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 251


>gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735]
 gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735]
          Length = 681

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +     D +  I+     D V
Sbjct: 258 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFSQAKDKSPCIIFIDEIDAV 307


>gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5]
 gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5]
          Length = 670

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G  +A   +      L+N  + Q L A +     PK +LL
Sbjct: 161 KMITKDTPKTTFA----DVAGADEAVEELHEIKDFLQNPAKYQALGAKI-----PKGVLL 211

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
 gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
          Length = 671

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G ++A   +      L+N  + Q L A +     PK +LL
Sbjct: 160 KMITKDTPKTTFA----DVAGAEEAVEELHEIKDFLQNPGKYQALGAKI-----PKGVLL 210

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 211 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 260


>gi|326570972|gb|EGE20996.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella
           catarrhalis BC7]
          Length = 766

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L + + GQ  A   +  A+               +    + L  GPTGVGKT I
Sbjct: 457 KNLNANLKQMVFGQDQAVDTLVDAI-----LLARSGLTHPDKPIGSFLFSGPTGVGKTEI 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           SR+LA L G P ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 512 SRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIQQNPHC 566


>gi|308081381|ref|NP_001183829.1| hypothetical protein LOC100502422 [Zea mays]
 gi|238014784|gb|ACR38427.1| unknown [Zea mays]
          Length = 475

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K  F   P   V+ LD  + G   AK   + V   L+N  +   L A +     PK  LL
Sbjct: 7   KSKFQEVPETGVTFLD--VAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLL 59

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGP G GKT ++R +A  AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 60  VGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 109


>gi|149248642|ref|XP_001528708.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448662|gb|EDK43050.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1011

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK+ VA  + +  +  +    L  ++ P+  +L GP G GKT ++R  A  A
Sbjct: 541 KDVAGMEEAKQEVAEFV-SFLKDPEKYEKLGAKI-PRGAILSGPPGTGKTLLARATAGEA 598

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 599 GVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 629


>gi|148258082|ref|YP_001242667.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146410255|gb|ABQ38761.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 638

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 266

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 267 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALMRPGRF 317

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   + S     GR++ +++ V+K
Sbjct: 318 DRQVVVSNPDIIGREQILKVHVRK 341


>gi|323142056|ref|ZP_08076904.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322413443|gb|EFY04314.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 651

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK+ +   +    +  Q   DL  ++ PK +LL GP G GKT +++ +A  A
Sbjct: 153 KDVAGAEEAKQELEEVVE-FLKHPQKYNDLGAKI-PKGVLLYGPPGTGKTLLAKAVAGEA 210

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQA------- 126
           G PF  +  + F E+ +VG    ++ RDL D     A  IV     D V  Q        
Sbjct: 211 GVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKSAPCIVFIDEIDAVGRQRGAGLGGG 268

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  + G +A          N  ++    L      D++I ++  D    
Sbjct: 269 HDEREQTLNQLLVEMDGFSANEGIIMIAATNRPDILDPALLRPGRFDRQIVVDRPDIKGR 328

Query: 176 ISNFDIP-GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                +   G  +G     ++ ++         +   V +    L   +  + I+M  + 
Sbjct: 329 TEILKVHVKGKPMGPDVNLDVIAQRTPGFTGADLSNLVNEAA-LLTARKDKKAINMPEME 387

Query: 235 RDSIQMVENY 244
             + +++   
Sbjct: 388 EAAERVIMGP 397


>gi|260431104|ref|ZP_05785075.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414932|gb|EEX08191.1| cell division protease FtsH [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 638

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|222086969|ref|YP_002545503.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
 gi|221724417|gb|ACM27573.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
          Length = 647

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|296116797|ref|ZP_06835403.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976598|gb|EFG83370.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 779

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A+  A++              E    N L  GPTGVGKT
Sbjct: 458 TLRSLERDLKGMVYGQDKAIEALTAAIK-----LSRAGLRDAEKPIGNYLFSGPTGVGKT 512

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++++LA   G   I+ +++++ E            GYVG +   ++ D +D   +
Sbjct: 513 EVAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAIDQHPH 568


>gi|125598556|gb|EAZ38336.1| hypothetical protein OsJ_22711 [Oryza sativa Japonica Group]
          Length = 686

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 233 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 287

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 288 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 320


>gi|6692685|gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana]
          Length = 662

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 220 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 277

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 278 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 336

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 337 DEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 396

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 397 DILKVHSGNKKFESGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 441

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 442 RRGKTAISSKEIDDSIDRIVAGMEG 466


>gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302]
 gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302]
          Length = 683

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ+ AK+ V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 203 KDVAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +     D +  I+     D V
Sbjct: 258 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFSQAKDKSPCIIFIDEIDAV 307


>gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
 gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC
           25845]
          Length = 676

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 31/191 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 192 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  +     + +  I+     D V R ++   A
Sbjct: 247 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKNPA 305

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D++I +++ D 
Sbjct: 306 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLPDL 365

Query: 173 SSDISNFDIPG 183
                 F +  
Sbjct: 366 PERKEIFLVHM 376


>gi|189468122|ref|ZP_03016907.1| hypothetical protein BACINT_04517 [Bacteroides intestinalis DSM
           17393]
 gi|189436386|gb|EDV05371.1| hypothetical protein BACINT_04517 [Bacteroides intestinalis DSM
           17393]
          Length = 699

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 28/197 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +P +I     + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT
Sbjct: 185 TPIKIT---FKDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKT 239

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-R 123
            +++ +A  A  PF  +  + F E+ +VG     V  + R   + A  IV     D V R
Sbjct: 240 LLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGR 298

Query: 124 EQASINA----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEI 165
            +A   A    +ER      +L  + G  + S        N  +V  K L      D++I
Sbjct: 299 ARAKAAAMGGNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQI 358

Query: 166 DIEVADTSSDISNFDIP 182
            +++ D +     F + 
Sbjct: 359 HVDLPDLNERKEVFGVH 375


>gi|163738353|ref|ZP_02145768.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
 gi|163742230|ref|ZP_02149618.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161384560|gb|EDQ08941.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10]
 gi|161388274|gb|EDQ12628.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis
           BS107]
          Length = 637

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135]
 gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135]
          Length = 635

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 173 KDVAGQEEAKQELREVVEFLKNPKKFEKIGARI-----PKGVLLVGSPGTGKTLLAKAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 228 GEAGVNFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 261


>gi|115464291|ref|NP_001055745.1| Os05g0458400 [Oryza sativa Japonica Group]
 gi|122169030|sp|Q0DHL4|FTSH8_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 8,
           mitochondrial; Short=OsFTSH8; Flags: Precursor
 gi|113579296|dbj|BAF17659.1| Os05g0458400 [Oryza sativa Japonica Group]
          Length = 822

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 335 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 389

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 390 GESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 439


>gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18]
 gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18]
          Length = 676

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 31/191 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 192 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  +     + +  I+     D V R ++   A
Sbjct: 247 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKNPA 305

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D++I +++ D 
Sbjct: 306 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLPDL 365

Query: 173 SSDISNFDIPG 183
                 F +  
Sbjct: 366 PERKEIFLVHM 376


>gi|90418980|ref|ZP_01226891.1| ATP-dependent metalloprotease involved in cell division
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337060|gb|EAS50765.1| ATP-dependent metalloprotease involved in cell division
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 645

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 27/203 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGVDEAKQDLEEVVEFLREPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQASINA 130
            A  PF  +  + F E+ +VG    ++ RD+ + A      I+     D V R + +   
Sbjct: 214 EANVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKNSPCIIFIDEIDAVGRHRGA--- 268

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 269 ---------GLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRF 319

Query: 191 NLSELFSKVMGSGRKKKIRMSVQ 213
           +   +       GR+K +++ V+
Sbjct: 320 DRQVMVPNPDVGGREKILKVHVR 342


>gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
 gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319]
          Length = 678

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 31/191 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LL+GP G GKT +++ +A
Sbjct: 184 KDVAGQTGAKQEVQEIVEFLKNPKKYTDLGGKI-----PKGALLIGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF  +  + F E+ +VG     V  +     + +  I+     D V R ++   A
Sbjct: 239 GEAGVPFFSMSGSDFVEM-FVGVGASRVRDVFHQAKEKSPCIIFIDEIDAVGRARSKNPA 297

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G    S        N  ++  K L      D++I +++ D 
Sbjct: 298 MGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKALLRAGRFDRQIHVDLPDL 357

Query: 173 SSDISNFDIPG 183
                 F +  
Sbjct: 358 PERKDIFLVHM 368


>gi|328857483|gb|EGG06599.1| ATPase [Melampsora larici-populina 98AG31]
          Length = 819

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           R + G  +AK  +   +    +  + P         +PK  +L GP G GKT +++  A 
Sbjct: 305 RDVAGMDEAKEEIMEFV----KFLKEPQKYERLGAKIPKGAILSGPPGTGKTLLAKATAG 360

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 361 EAGVPFLSVSGSEFVEM-FVGVGPSRV-RDLFATAKKN 396


>gi|308081970|ref|NP_001183588.1| hypothetical protein LOC100502182 [Zea mays]
 gi|238013264|gb|ACR37667.1| unknown [Zea mays]
          Length = 809

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 35/184 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 328 DIVTFAD--VAGVDEAKEELEEIVEFLRNPERYIRLGA-----RPPRGVLLVGLPGTGKT 380

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AIN 112
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL                  A+ 
Sbjct: 381 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFAKAKKESPSIIFIDEIDAVA 438

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKE 164
             R+SR   V          ++L  + G    S        N  +V    LR     D+ 
Sbjct: 439 KSRDSRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRV 498

Query: 165 IDIE 168
           + +E
Sbjct: 499 VMVE 502


>gi|255280565|ref|ZP_05345120.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269030|gb|EET62235.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 694

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 189 KDVAGQDEAKESLQEVVDFLENPGKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 243

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A APF  +  ++F E+ +VG    ++ R+L + A   
Sbjct: 244 GEAHAPFFSLSGSEFVEM-FVGVGASRV-RELFEEAKKN 280


>gi|195623450|gb|ACG33555.1| FtsH6 - Zea mays FtsH protease
          Length = 677

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 214 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 272 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 330

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 331 DEREQTLNQLLTXMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 390

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + G       ++S     +   G                       L++   +   
Sbjct: 391 EILKVHGSNKKFDSDVSLDVIAMRTPGFSGAD---------------LANLLNEAAILAG 435

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 436 RRGRTAISSKEIDDSIDRIVAGMEG 460


>gi|149202856|ref|ZP_01879827.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035]
 gi|149143402|gb|EDM31438.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035]
          Length = 627

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 143 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 197

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 198 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 247


>gi|121535064|ref|ZP_01666881.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
 gi|121306314|gb|EAX47239.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans
           Nor1]
          Length = 651

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     V   L++  +   L A +     PK +LL GP G GKT ++R +A
Sbjct: 163 KDVAGADEAKQELEEVVEFLKHPKKFNDLGARI-----PKGVLLFGPPGTGKTLLARAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 218 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 254


>gi|72388112|ref|XP_844480.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           brucei TREU927]
 gi|62359370|gb|AAX79808.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma brucei]
 gi|70801013|gb|AAZ10921.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261327653|emb|CBH10630.1| metallo-peptidase, Clan MA(E) Family M41 [Trypanosoma brucei
           gambiense DAL972]
          Length = 719

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K +++F  RE+ V+     + G  +AK  V      L+N  R Q L A L     PK +L
Sbjct: 253 KSSYSFK-RELSVATRLSDVAGLTEAKHEVVEVIDFLKNPSRYQALGAKL-----PKGVL 306

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   ++  R+L   A
Sbjct: 307 LDGPPGVGKTLLAKAIAGEAMVPFLSCSGSEFEEV-YVGVGAQRA-RELFKQA 357


>gi|328949957|ref|YP_004367292.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450281|gb|AEB11182.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 630

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  ++  +   +N  R  ++ A +     P+ +LLVGP G GKT I+R +A
Sbjct: 154 KDVAGAEEAKEELSEIVEFLKNPNRFFEMGARI-----PRGVLLVGPPGSGKTHIARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PFI    + F E+ +VG    ++ RDL + A   
Sbjct: 209 GEARVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRH 245


>gi|297831326|ref|XP_002883545.1| hypothetical protein ARALYDRAFT_479981 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329385|gb|EFH59804.1| hypothetical protein ARALYDRAFT_479981 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 787

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 33/180 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  R  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 330 DVAGVDEAKEELEEIVEFLKNPDRYVRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 384

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRD 120
            +  PFI    ++F E+ YVG    ++ RDL                  A+   R+ +  
Sbjct: 385 ESDVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGKFR 442

Query: 121 EVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
            V          ++L  + G  ++S        N  +V    LR     D+ + +E  D 
Sbjct: 443 MVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDK 502


>gi|257457970|ref|ZP_05623129.1| cell division protease FtsH homolog [Treponema vincentii ATCC
           35580]
 gi|257444683|gb|EEV19767.1| cell division protease FtsH homolog [Treponema vincentii ATCC
           35580]
          Length = 671

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  + + + +  +  Q   ++  ++ P+ +LLVGP G GKT ++R +A  +G
Sbjct: 210 DVAGVDEAKEEL-VEVVDFLKFPQKYTEIGGKI-PRGVLLVGPPGTGKTLLARAVAGESG 267

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF ++  + F E+ +VG    ++ RDL   A            RE+A        LDA+
Sbjct: 268 VPFFRISGSDFVEM-FVGVGASRV-RDLFKQA------------REKAPCIIFIDELDAI 313

Query: 139 VGKTATSNTREVFRKK 154
                 S      R++
Sbjct: 314 GKSRLNSIHSNDEREQ 329


>gi|212693626|ref|ZP_03301754.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|237708786|ref|ZP_04539267.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|237724224|ref|ZP_04554705.1| metalloprotease FtsH [Bacteroides sp. D4]
 gi|265755948|ref|ZP_06090415.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
 gi|212663879|gb|EEB24453.1| hypothetical protein BACDOR_03145 [Bacteroides dorei DSM 17855]
 gi|229437412|gb|EEO47489.1| metalloprotease FtsH [Bacteroides dorei 5_1_36/D4]
 gi|229457212|gb|EEO62933.1| AAA-metalloprotease FtsH ATPase domain-containing protein
           [Bacteroides sp. 9_1_42FAA]
 gi|263234026|gb|EEZ19627.1| metalloprotease FtsH [Bacteroides sp. 3_1_33FAA]
          Length = 668

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ +AK+ V   +    ++ Q   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 190 KDVAGQAEAKQEVEEIVE-FLKQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  + F E+ +VG     V  + R   + A  I+     D V R +        
Sbjct: 248 DVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNPSMGG 306

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                N   ++L  + G  + S        N  ++  K L      D++I +++ D +  
Sbjct: 307 NDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVDLPDLNER 366

Query: 176 ISNFDIP 182
              F + 
Sbjct: 367 KEVFGVH 373


>gi|146338276|ref|YP_001203324.1| cell division protein FtsH [Bradyrhizobium sp. ORS278]
 gi|146191082|emb|CAL75087.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [Bradyrhizobium sp. ORS278]
          Length = 657

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 173 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 228 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 283

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 284 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALMRPGRF 334

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   + S     GR++ +++ V+K
Sbjct: 335 DRQVVVSNPDIIGREQILKVHVRK 358


>gi|21672968|ref|NP_661033.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646027|gb|AAM71375.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 706

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 184 LYENLDEHTRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTKLGGKL-----PKGVLLVGP 238

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 239 PGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAARVRDLFKSAKEKAPCIIFIDE 297

Query: 119 RDEV 122
            D V
Sbjct: 298 IDAV 301


>gi|115470052|ref|NP_001058625.1| Os06g0725900 [Oryza sativa Japonica Group]
 gi|75321991|sp|Q5Z974|FTSH1_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 1,
           chloroplastic; Short=OsFTSH1; Flags: Precursor
 gi|54291028|dbj|BAD61706.1| putative chloroplast FtsH protease [Oryza sativa Japonica Group]
 gi|113596665|dbj|BAF20539.1| Os06g0725900 [Oryza sativa Japonica Group]
 gi|215694335|dbj|BAG89328.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 686

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 233 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 287

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 288 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 320


>gi|260429534|ref|ZP_05783511.1| cell division protease FtsH [Citreicella sp. SE45]
 gi|260420157|gb|EEX13410.1| cell division protease FtsH [Citreicella sp. SE45]
          Length = 638

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 694

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 232 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 289

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 290 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 348

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 349 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 408

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S     +   G               L+ + +   I      + 
Sbjct: 409 EILKVHAGNKKFDGDVSLDVIAMRTPGFS-------GADLANLLNEAA---ILAGRRGKT 458

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
           +I   E       D  D+IVA   G
Sbjct: 459 AITSKEID-----DSIDRIVAGMEG 478


>gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238]
 gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238]
          Length = 639

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 258


>gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera]
          Length = 694

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 232 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 289

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 290 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 348

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 349 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 408

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S     +   G               L+ + +   I      + 
Sbjct: 409 EILKVHAGNKKFDGDVSLDVIAMRTPGFS-------GADLANLLNEAA---ILAGRRGKT 458

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
           +I   E       D  D+IVA   G
Sbjct: 459 AITSKEID-----DSIDRIVAGMEG 478


>gi|258541380|ref|YP_003186813.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632458|dbj|BAH98433.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635515|dbj|BAI01484.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638570|dbj|BAI04532.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641624|dbj|BAI07579.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644679|dbj|BAI10627.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647734|dbj|BAI13675.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650787|dbj|BAI16721.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653778|dbj|BAI19705.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 781

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 463 RSLERDLKGMVFGQDQAIDALSAAIK-----LARAGLRDAEKPIGNYLFSGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +R+LA   G   ++ +++++ E            GYVG +   ++ D +D   +
Sbjct: 518 ARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAIDQHPH 571


>gi|238755150|ref|ZP_04616496.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
 gi|238706597|gb|EEP98968.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
          Length = 644

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|71066053|ref|YP_264780.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           arcticus 273-4]
 gi|71039038|gb|AAZ19346.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           arcticus 273-4]
          Length = 849

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 20/119 (16%)

Query: 10  REIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + I+  LDR     + GQ +A   +A A++              +    + +  GPTGVG
Sbjct: 512 KSILQHLDRDLKHLVFGQDEAIGTLADAIK-----LSRAGLKAPDKPIGSFMFAGPTGVG 566

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           KT +SR+LA L G   ++ +++++ E            GYVG +   ++ + ++   + 
Sbjct: 567 KTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHC 625


>gi|313906218|ref|ZP_07839564.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313468948|gb|EFR64304.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 622

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G+ +AK     +   L N  +  ++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 157 NDVAGEDEAKELLQEIVDFLHNPAKYTEIGAKM-----PKGALLVGPPGTGKTLLAKAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 212 GEANVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 246


>gi|332716439|ref|YP_004443905.1| cell division protein [Agrobacterium sp. H13-3]
 gi|325063124|gb|ADY66814.1| cell division protein [Agrobacterium sp. H13-3]
          Length = 654

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|225873635|ref|YP_002755094.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
 gi|310943113|sp|C1F8X6|FTSH_ACIC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|225793772|gb|ACO33862.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
          Length = 639

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +   + R+          +PK +LLVGP G GKT ++R +A  A
Sbjct: 156 KDVAGVDEAKEELKEIIE--FLREAQKFQKLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 214 NVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 260


>gi|218196923|gb|EEC79350.1| hypothetical protein OsI_20217 [Oryza sativa Indica Group]
          Length = 829

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 342 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 396

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 397 GESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 446


>gi|299139539|ref|ZP_07032713.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8]
 gi|298598467|gb|EFI54631.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8]
          Length = 637

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +   + R+          +PK +L+VGP G GKT ++R +A  A
Sbjct: 156 KDVAGVDEAKEELKEIIE--FLREAQKFQRLGGRIPKGVLMVGPPGTGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 214 NVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 260


>gi|54022362|ref|YP_116604.1| putative cell division protein [Nocardia farcinica IFM 10152]
 gi|54013870|dbj|BAD55240.1| putative cell division protein [Nocardia farcinica IFM 10152]
          Length = 796

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 169 DVAGADEAVEELYEIKDFLQNPVRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|220925336|ref|YP_002500638.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS
           2060]
 gi|219949943|gb|ACL60335.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS
           2060]
          Length = 640

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 247


>gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa]
 gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora
           crassa]
          Length = 738

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 38/241 (15%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 256 DVHGCDEAKEELQELIDFLRNPEKYSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 310

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ RDL   A            + +A        L
Sbjct: 311 EAGVPFFNMSGSEFEEV-YVGVGAKRV-RDLFAAA------------KAKAPSIVFIDEL 356

Query: 136 DALVGKTATSNT---REVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASVG 188
           DA+ G+  + +    R+   + L + +  ++   + +   ++   + D     PG     
Sbjct: 357 DAIGGRRNSRDATYVRQTLNQLLTELDGFEQNSGVIIIGATNFPESLDKALTRPGRFDRN 416

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPE---------LMRDESDRLIDMDTVHRDSIQ 239
           ++         M   +    R+                 L   E + +++   +H   ++
Sbjct: 417 VVVSLPDVRGRMAILQHHAKRIKAAADVNLEAIASRTSGLSGAELENIVNQAAIHASKLK 476

Query: 240 M 240
            
Sbjct: 477 A 477


>gi|327193462|gb|EGE60358.1| cell division metalloproteinase protein [Rhizobium etli CNPAF512]
          Length = 643

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|317472355|ref|ZP_07931682.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
 gi|316900197|gb|EFV22184.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA]
          Length = 663

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQQ+AK ++      L +  +  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 183 DVAGQQEAKESLTEMVDFLHHPDKYLKIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 237

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 EANVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 270


>gi|254773201|ref|ZP_05214717.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 799

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 251


>gi|255723800|ref|XP_002546829.1| hypothetical protein CTRG_01134 [Candida tropicalis MYA-3404]
 gi|240134720|gb|EER34274.1| hypothetical protein CTRG_01134 [Candida tropicalis MYA-3404]
          Length = 923

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G ++AK+ V   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 461 KDVAGMEEAKQEVMEFV----KFLQKPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 516

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 517 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 549


>gi|182680533|ref|YP_001834679.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636416|gb|ACB97190.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 640

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 EDVAGVDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|118463779|ref|YP_879822.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
 gi|118165066|gb|ABK65963.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104]
          Length = 799

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 251


>gi|41406546|ref|NP_959382.1| hypothetical protein MAP0448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394895|gb|AAS02765.1| FtsH [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 799

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 251


>gi|238797558|ref|ZP_04641055.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
 gi|238718555|gb|EEQ10374.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
          Length = 651

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|99082201|ref|YP_614355.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
 gi|99038481|gb|ABF65093.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040]
          Length = 637

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|322504676|emb|CAM38449.2| putative mitochondrial ATP-dependent zinc metallopeptidase
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 790

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           K  F F  RE+ VS   + + G  +AK  V + + +  ++ +    L  +L PK +LL G
Sbjct: 324 KSRFTFK-REMSVSTRLKDVAGLTEAKHEV-VEVIDFLKQPERYQALGAKL-PKGVLLDG 380

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           P GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A N 
Sbjct: 381 PPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQRV-RELFREAHNC 431


>gi|75908451|ref|YP_322747.1| FtsH-2 peptidase [Anabaena variabilis ATCC 29413]
 gi|75702176|gb|ABA21852.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 645

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V  LD  + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +
Sbjct: 171 VKFLD--VAGVDEAKAELEEIVDFLKNATKYTNLGAKI-----PKGVLLVGPPGTGKTLL 223

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           ++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 224 AKAIAGEAGVPFFSISGSEFIEL-FVGVGAARV-RDLFEQAKKQ 265


>gi|114797928|ref|YP_759752.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas
           neptunium ATCC 15444]
 gi|114738102|gb|ABI76227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas
           neptunium ATCC 15444]
          Length = 771

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + ++L R + GQ +A  A+A +++         A LR+   P  + L  GPTGVGKT 
Sbjct: 455 KSLDADLKRVVFGQDEAIEALAASIK------LARAGLREPNKPIGSYLFTGPTGVGKTE 508

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++++LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 VAKQLASIMGVEMLRFDMSEYMERHTVSRLIGAPPGYVGYDEGGLLTDGVDQHPHC 564


>gi|309780957|ref|ZP_07675696.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|330824647|ref|YP_004387950.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|57282289|emb|CAD32530.1| putative zinc metallopeptidase [uncultured bacterium]
 gi|308920260|gb|EFP65918.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA]
 gi|329310019|gb|AEB84434.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 627

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPQEYGRLGARI-PKGVLLVGPPGTGKTLLTKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|82702921|ref|YP_412487.1| ATP-dependent metalloprotease FtsH [Nitrosospira multiformis ATCC
           25196]
 gi|82410986|gb|ABB75095.1| membrane protease FtsH catalytic subunit [Nitrosospira multiformis
           ATCC 25196]
          Length = 635

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + N  +     + L    +PK ILLVGP G GKT ++R +A  A 
Sbjct: 169 DVAGVDEAKEELEE-VINFLKDPAGYSRLGG-RVPKGILLVGPPGTGKTLLARAVAGEAN 226

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 227 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 256


>gi|42561751|ref|NP_563766.3| FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion
           binding [Arabidopsis thaliana]
 gi|75331430|sp|Q8W585|FTSH8_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 8,
           chloroplastic; Short=AtFTSH8; Flags: Precursor
 gi|16930423|gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24 [Arabidopsis thaliana]
 gi|28392858|gb|AAO41866.1| putative FtsH protease [Arabidopsis thaliana]
 gi|332189865|gb|AEE27986.1| cell division protease ftsH-8 [Arabidopsis thaliana]
          Length = 685

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 220 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 277

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 278 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 336

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 337 DEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 396

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 397 DILKVHSGNKKFESGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 441

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 442 RRGKTAISSKEIDDSIDRIVAGMEG 466


>gi|254882796|ref|ZP_05255506.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294778231|ref|ZP_06743657.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|319644311|ref|ZP_07998805.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
 gi|254835589|gb|EET15898.1| metalloprotease FtsH [Bacteroides sp. 4_3_47FAA]
 gi|294447859|gb|EFG16433.1| ATP-dependent metallopeptidase HflB [Bacteroides vulgatus PC510]
 gi|317384206|gb|EFV65179.1| AAA-metalloprotease FtsH with ATPase domain-containing protein
           [Bacteroides sp. 3_1_40A]
          Length = 668

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ +AK+ V   +    ++ Q   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 190 KDVAGQAEAKQEVEEIVE-FLKQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  + F E+ +VG     V  + R   + A  I+     D V R +        
Sbjct: 248 DVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNPSMGG 306

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                N   ++L  + G  + S        N  ++  K L      D++I +++ D +  
Sbjct: 307 NDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVDLPDLNER 366

Query: 176 ISNFDIP 182
              F + 
Sbjct: 367 KEVFGVH 373


>gi|242088165|ref|XP_002439915.1| hypothetical protein SORBIDRAFT_09g022490 [Sorghum bicolor]
 gi|241945200|gb|EES18345.1| hypothetical protein SORBIDRAFT_09g022490 [Sorghum bicolor]
          Length = 815

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 329 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 383

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +IV     D +
Sbjct: 384 GESGVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 433


>gi|194214505|ref|XP_001491415.2| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Equus caballus]
          Length = 857

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 395 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 452

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 453 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 511

Query: 122 VREQ 125
           V  +
Sbjct: 512 VGRK 515


>gi|86359049|ref|YP_470941.1| cell division metalloproteinase protein [Rhizobium etli CFN 42]
 gi|86283151|gb|ABC92214.1| cell division metalloproteinase protein [Rhizobium etli CFN 42]
          Length = 643

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|159185871|ref|NP_356910.2| metalloprotease [Agrobacterium tumefaciens str. C58]
 gi|159141005|gb|AAK89695.2| metalloprotease [Agrobacterium tumefaciens str. C58]
          Length = 648

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|260581319|ref|ZP_05849135.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
 gi|260091986|gb|EEW75933.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
          Length = 336

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 258


>gi|242059205|ref|XP_002458748.1| hypothetical protein SORBIDRAFT_03g039540 [Sorghum bicolor]
 gi|241930723|gb|EES03868.1| hypothetical protein SORBIDRAFT_03g039540 [Sorghum bicolor]
          Length = 808

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 330 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 384

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             +  PF+ +  + F E+ +VG     V  + ++    A +IV     D     A   A 
Sbjct: 385 GESDVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIVFIDEID-----AIGRAR 438

Query: 132 ERILDALVGKTATSNTREVFRKKL 155
           +R      G +  ++ RE    +L
Sbjct: 439 DR-----GGFSGGNHERESTLNQL 457


>gi|206901548|ref|YP_002250585.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
 gi|206740651|gb|ACI19709.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12]
          Length = 607

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +QL A +     P+ ILLVGP G GKT ++R +A 
Sbjct: 158 DVAGADEAKQELKEVVDFLKYPQKYRQLGARI-----PRGILLVGPPGTGKTLLARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 213 EANVPFFSISGSEFVEM-FVGVGAARV-RDLFTQA 245


>gi|190893271|ref|YP_001979813.1| cell division metalloproteinase [Rhizobium etli CIAT 652]
 gi|190698550|gb|ACE92635.1| cell division metalloproteinase protein [Rhizobium etli CIAT 652]
          Length = 643

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|123440807|ref|YP_001004798.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087768|emb|CAL10554.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 644

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|15805615|ref|NP_294311.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           radiodurans R1]
 gi|6458286|gb|AAF10168.1|AE001917_5 ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus
           radiodurans R1]
          Length = 741

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + ++L+R + GQ+ A  AV+ A++         A LR+   P+   L  GPTGVGKT ++
Sbjct: 448 LEADLNRRVYGQEPAVSAVSSAVK------LARAGLRNPQKPQGSFLFAGPTGVGKTELA 501

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           R LA   G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 RALAERLGVELIRFDMSEYQEPHTVARLIGAPPGYVGFDQGGLLTDAVAKNPH 554


>gi|90426214|ref|YP_534584.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisB18]
 gi|90108228|gb|ABD90265.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 638

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKYQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|169633632|ref|YP_001707368.1| ATP-binding protease component [Acinetobacter baumannii SDF]
 gi|169152424|emb|CAP01379.1| ATP-binding protease component [Acinetobacter baumannii]
          Length = 758

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 220 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 277

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 278 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 336

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 337 DEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 396

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 397 DILKVHSGNKKFDNGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 441

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 442 RRGKTAISSKEIDDSIDRIVAGMEG 466


>gi|217976966|ref|YP_002361113.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2]
 gi|217502342|gb|ACK49751.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2]
          Length = 643

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  R Q+L   +     P+ +LL+GP G GKT ++R +A
Sbjct: 156 EDVAGVDEAKEDLQEIVEFLRDPQRFQRLGGRI-----PRGVLLIGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
 gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
          Length = 499

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ V      L++R + Q L A +     PK ILL+GP G GKT +++ +A  
Sbjct: 52  VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 106

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  ++F E+ +VG    ++ RDL D A   
Sbjct: 107 AGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAKKN 141


>gi|163745829|ref|ZP_02153188.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
 gi|161380574|gb|EDQ04984.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45]
          Length = 625

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 141 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 195

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 196 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 245


>gi|161525463|ref|YP_001580475.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189349804|ref|YP_001945432.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|160342892|gb|ABX15978.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189333826|dbj|BAG42896.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 615

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPKDYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|18422193|ref|NP_568604.1| VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865467|sp|Q9FH02|FTSH5_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           chloroplastic; Short=AtFTSH5; AltName: Full=Protein
           VARIEGATED 1; Flags: Precursor
 gi|10177012|dbj|BAB10200.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|22022513|gb|AAM83215.1| AT5g42270/K5J14_7 [Arabidopsis thaliana]
 gi|332007407|gb|AED94790.1| cell division protease ftsH-5 [Arabidopsis thaliana]
          Length = 704

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 251 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 305

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 306 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 338


>gi|93006501|ref|YP_580938.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
 gi|92394179|gb|ABE75454.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           cryohalolentis K5]
          Length = 845

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 20/119 (16%)

Query: 10  REIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           + I+  LDR     + GQ +A   +A A++              +    + +  GPTGVG
Sbjct: 512 KSILQHLDRDLKHLVFGQDEAIATLADAIK-----LSRAGLKAPDKPIGSFMFAGPTGVG 566

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           KT +SR+LA L G   ++ +++++ E            GYVG +   ++ + ++   + 
Sbjct: 567 KTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHC 625


>gi|259417972|ref|ZP_05741891.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
 gi|259346878|gb|EEW58692.1| cell division protease FtsH [Silicibacter sp. TrichCH4B]
          Length = 637

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|149915624|ref|ZP_01904150.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
 gi|149810516|gb|EDM70359.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b]
          Length = 641

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|297795319|ref|XP_002865544.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311379|gb|EFH41803.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 701

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 248 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 302

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 303 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 335


>gi|126728390|ref|ZP_01744206.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37]
 gi|126711355|gb|EBA10405.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37]
          Length = 640

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|126725519|ref|ZP_01741361.1| FtsH [Rhodobacterales bacterium HTCC2150]
 gi|126704723|gb|EBA03814.1| FtsH [Rhodobacterales bacterium HTCC2150]
          Length = 629

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 143 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 197

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 198 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 247


>gi|322420971|ref|YP_004200194.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320127358|gb|ADW14918.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 616

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   R V   L+   + +Q+        +PK +LLVGP G GKT ++R +A 
Sbjct: 176 DVAGMEEAKQELREVVEYLKEPDKFRQIGGK-----VPKGVLLVGPPGTGKTLLARAVAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 231 EAGVPFFSISASAFIEM-FVGVGASRV-RDLFASA 263


>gi|220910286|ref|YP_002485597.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866897|gb|ACL47236.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 623

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  R  Q+ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 169 DVAGVEEAKTELVEIVDFLKNPQRYSQIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 224 EAGVPFFSISGSEFVEL-FVGVGSARV-RDLFEQAKKQ 259


>gi|94967095|ref|YP_589143.1| FtsH peptidase [Candidatus Koribacter versatilis Ellin345]
 gi|94549145|gb|ABF39069.1| membrane protease FtsH catalytic subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 637

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +   + R+          +PK +LLVGP G GKT ++R +A  A
Sbjct: 155 KDVAGVDEAKEELKEIIE--FLREAQKFQKLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 212

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 213 NVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 259


>gi|217967257|ref|YP_002352763.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
 gi|217336356|gb|ACK42149.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724]
          Length = 607

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +QL A +     P+ ILLVGP G GKT ++R +A 
Sbjct: 158 DVAGADEAKQELKEVVDFLKFPQKYRQLGARI-----PRGILLVGPPGTGKTLLARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 213 EANVPFFSISGSEFVEM-FVGVGAARV-RDLFTQA 245


>gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
 gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
          Length = 669

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G ++A   +      L+N  + Q L A +     PK +LL
Sbjct: 160 KMITKDTPKTTFA----DVAGSEEAVEELHEIKDFLQNPAKYQALGAKI-----PKGVLL 210

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 211 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 260


>gi|89053470|ref|YP_508921.1| FtsH peptidase [Jannaschia sp. CCS1]
 gi|88863019|gb|ABD53896.1| membrane protease FtsH catalytic subunit [Jannaschia sp. CCS1]
          Length = 641

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 158 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 249


>gi|118591080|ref|ZP_01548479.1| endopeptidase Clp ATP-binding chain A [Stappia aggregata IAM 12614]
 gi|118436156|gb|EAV42798.1| endopeptidase Clp ATP-binding chain A [Stappia aggregata IAM 12614]
          Length = 815

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT ++R+LA
Sbjct: 467 LKRVVYGQDEAIGTLASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVARQLA 520

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 521 SSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 570


>gi|300916540|ref|ZP_07133270.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
 gi|300416164|gb|EFJ99474.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1]
          Length = 416

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  A 
Sbjct: 158 DVAGVDEAKAELVEIV-DFLKNPQEYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAA 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 262 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 321 RQVLVDRPDKKGRLDILKVHVKK 343


>gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002]
 gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002]
          Length = 637

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +A     L+   +   + A +     P+ +LL+GP G GKT +++ +A
Sbjct: 180 KDVAGVEEAKEELAEVVTFLKEPNKFTAIGAKI-----PRGMLLIGPPGTGKTLLAKAIA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + R   + A  +V     D V
Sbjct: 235 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAQENAPCLVFIDEIDAV 284


>gi|284048929|ref|YP_003399268.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
 gi|283953150|gb|ADB47953.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM
           20731]
          Length = 645

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     V   L+   +  QL A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGADEAKQELEEVVEFLKAPQKYNQLGAKI-----PKGVLLYGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 245


>gi|254509562|ref|ZP_05121629.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221533273|gb|EEE36261.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 638

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|254441752|ref|ZP_05055245.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
 gi|198251830|gb|EDY76145.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
          Length = 628

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 143 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 197

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 198 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 247


>gi|110635496|ref|YP_675704.1| membrane protease FtsH catalytic subunit [Mesorhizobium sp. BNC1]
 gi|110286480|gb|ABG64539.1| membrane protease FtsH catalytic subunit [Chelativorans sp. BNC1]
          Length = 645

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 248


>gi|326494184|dbj|BAJ90361.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LL+GP G GKT ++R +A  AG
Sbjct: 105 DVKGVDEAKADLEDIV--HYLRDPDHFTRLGGKLPKGVLLMGPPGTGKTMLARAVAGEAG 162

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF     + F E+ YVG   +++ R+L   A          ++     I  +E  +DA+
Sbjct: 163 VPFCACSGSDFEEV-YVGLGAKRV-RELFQSA----------KMLSPCIIFIDE--IDAI 208

Query: 139 VGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
            G      +++ R+   + L + +   +   I V   ++   + D+
Sbjct: 209 GGHRHAGGSTSQRQTLNQLLVEMDGFKQNEGIIVVAATNFPESLDM 254


>gi|189219923|ref|YP_001940563.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943095|sp|B3DY14|FTSH2_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|189186781|gb|ACD83966.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 641

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     +   L++  + Q+L   +     PK +L+VGP G GKT +++ +A
Sbjct: 153 KDVAGVEEAKEEVQELVEFLKDPKKFQKLGGRI-----PKGVLMVGPPGTGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 208 GEADVPFFSISGSDFVEM-FVGVGASRV-RDMFEQARRH 244


>gi|2077957|emb|CAA73318.1| ATPase [Arabidopsis thaliana]
          Length = 634

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 195 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 249

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 250 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 282


>gi|85706707|ref|ZP_01037799.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217]
 gi|85668765|gb|EAQ23634.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217]
          Length = 629

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 143 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 197

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 198 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 247


>gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior]
          Length = 749

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 23/192 (11%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNIL 57
           M       P +I    +  + G  +AK+ +      L+N  +   L   L     PK +L
Sbjct: 292 MSHRIEIDPEDIHVTFND-VKGVDEAKQELLNVVEFLKNPDKFSALGGKL-----PKGVL 345

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVR 115
           LVGP G GKT ++R +A  AG PF  V   +F E  +G   R V  + R   + A  +V 
Sbjct: 346 LVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVF 405

Query: 116 ESRRDEVREQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDK 163
               D V  + + +     A + I   L           V        RK L    +   
Sbjct: 406 IDEIDSVGAKRTNSILHPYANQTINQLLSEMDGFRQNEGVIVLGATNRRKDLDKALMRPG 465

Query: 164 EIDIEVADTSSD 175
             D+E+     D
Sbjct: 466 RFDVEIYVNKPD 477


>gi|329114969|ref|ZP_08243724.1| ClpA-like protein [Acetobacter pomorum DM001]
 gi|326695412|gb|EGE47098.1| ClpA-like protein [Acetobacter pomorum DM001]
          Length = 781

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  A++ A++              E    N L  GPTGVGKT +
Sbjct: 462 RSLERDLKGMVFGQDQAIDALSAAIK-----LARAGLRDAEKPIGNYLFSGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +R+LA   G   ++ +++++ E            GYVG +   ++ D +D   +
Sbjct: 517 ARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAIDQHPH 570


>gi|308049698|ref|YP_003913264.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas
           balearica DSM 9799]
 gi|307631888|gb|ADN76190.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas
           balearica DSM 9799]
          Length = 758

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + +E++  LDR     + GQ  A  A+  A+     R        +     N L  GPTG
Sbjct: 449 TDKEVLENLDRNLKMVVFGQDPAIEALTAAI-----RLARSGLGNEGKPVGNFLFAGPTG 503

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++++LAR  G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 VGKTEVTQQLARQLGVELIRFDMSEYMERHSVSRLVGAPPGYVGYDQGGLLTDAVLKHPH 563

Query: 113 I 113
            
Sbjct: 564 S 564


>gi|168014683|ref|XP_001759881.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689011|gb|EDQ75385.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + Q+L A +     PK  LLVGP G GKT +++  A
Sbjct: 169 KDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 224 GEAGVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 257


>gi|238783521|ref|ZP_04627543.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
 gi|238715576|gb|EEQ07566.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
          Length = 619

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|239627702|ref|ZP_04670733.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517848|gb|EEQ57714.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 724

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 48/333 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 171 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRR 119
             A  PF  +  + F E+ +VG    ++ RDL                  AI   R+SR 
Sbjct: 226 GEAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFKNATENAPCIIFIDEIDAIGRSRDSRM 283

Query: 120 DEVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
               E+       ++L  + G  +T         N  E+    L      D+ + ++  D
Sbjct: 284 GGNDER--EQTLNQLLSEMDGFDSTKGLLVLGATNRPEILDPALLRPGRFDRRVIVDKPD 341

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            +  I+   +   +   +L+ S  F  +  +        +V      +M + +   +   
Sbjct: 342 LNGRINILKVH--SKDVLLDESVDFKDIALATSG-----AVGADLANMMNEAAINAVKHG 394

Query: 232 T--VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289
              V +  +       +V  ++ D+I++++      VS   V   L+  ++  S   +  
Sbjct: 395 RSAVSQKDLFEAVEVVLVGKEKKDRIMSKEER--RIVSYHEVGHALVSALQKHSEPVQKI 452

Query: 290 SI--NTDHILFIASGAFHVSRPADLLPEIQGRF 320
           +I   T   L          +  +   E+Q R 
Sbjct: 453 TIVPRTMGALGYVMNVPEEEKYLNTKKELQARL 485


>gi|75114857|sp|Q655S1|FTSH2_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 2,
           chloroplastic; Short=OsFTSH2; Flags: Precursor
 gi|52075838|dbj|BAD45446.1| putative FtsH-like protein Pftf precursor [Oryza sativa Japonica
           Group]
 gi|125556417|gb|EAZ02023.1| hypothetical protein OsI_24055 [Oryza sativa Indica Group]
 gi|125598182|gb|EAZ37962.1| hypothetical protein OsJ_22309 [Oryza sativa Japonica Group]
          Length = 676

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 214 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 272 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 330

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 331 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 390

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + G       ++S                  +    P     +   L++   +   
Sbjct: 391 EILKVHGSNKKFDTDVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 435

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 436 RRGRTAISSKEIDDSIDRIVAGMEG 460


>gi|89068036|ref|ZP_01155453.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
 gi|89046275|gb|EAR52332.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
          Length = 635

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKDELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|297852714|ref|XP_002894238.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340080|gb|EFH70497.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 720

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 267 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 321

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 322 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 354


>gi|156088495|ref|XP_001611654.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
 gi|154798908|gb|EDO08086.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
          Length = 797

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 56/238 (23%)

Query: 18  RYIIGQQDAKRAVAIAL--------RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + G  +AK+ ++  +           +             +PK  LL G  G GKT +
Sbjct: 298 KDVAGMHEAKKEISEFVDFLKNPKAYEHY----------GAKIPKGALLCGAPGTGKTLL 347

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA 126
           ++ +A  A  PF  +  + F E+ +VG     V  +       A  IV     D V ++ 
Sbjct: 348 AKAVAGEANVPFYSISGSDFIEV-FVGVGPSRVRDLFEKARKNAPAIVFIDEIDAVGKKR 406

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           +            G +A +N         R+  ++   ++++   +SS +          
Sbjct: 407 AK----------GGFSAGANDE-------RENTLNQILVEMDGFKSSSGVIVL------- 442

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKC---------YPELMRDESDRLIDMDTVHR 235
               N +++    +    +    +++ K             L   + ++ +DMD V R
Sbjct: 443 -AGTNRADILDPALVRPGRFDRTITINKPDLDERFEIFKVHLSPIKLNKNLDMDDVAR 499


>gi|115469444|ref|NP_001058321.1| Os06g0669400 [Oryza sativa Japonica Group]
 gi|113596361|dbj|BAF20235.1| Os06g0669400 [Oryza sativa Japonica Group]
          Length = 609

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 147 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 204

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 205 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 263

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 264 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 323

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + G       ++S                  +    P     +   L++   +   
Sbjct: 324 EILKVHGSNKKFDTDVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 368

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 369 RRGRTAISSKEIDDSIDRIVAGMEG 393


>gi|87119798|ref|ZP_01075695.1| cell division protein FtsH [Marinomonas sp. MED121]
 gi|86165274|gb|EAQ66542.1| cell division protein FtsH [Marinomonas sp. MED121]
          Length = 656

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K      P + +      + G  +AK   + +   LR   + Q+L   +     P+ IL+
Sbjct: 138 KSKARLLPEDQIKTTFADVAGCDEAKEDTKELVDFLREPSKFQRLGGKI-----PRGILM 192

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 193 CGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|159903848|ref|YP_001551192.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211]
 gi|159889024|gb|ABX09238.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211]
          Length = 619

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R Q  +D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKRPQRYSDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|2492515|sp|Q39444|FTSH_CAPAN RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|929013|emb|CAA62084.1| ATPase [Capsicum annuum]
          Length = 662

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 37/268 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 231 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 285

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF     ++F E+ +VG     V  +  +    A  IV     D V R++      
Sbjct: 286 EAGVPFFSCAASEFVEL-FVGVGASRVRHLFENAKSKAPCIVFIDEIDAVGRQRGAGLGG 344

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G +  S        N  +V    L      D+++ ++  D + 
Sbjct: 345 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDRPDVAG 404

Query: 175 DISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +    +   G ++      +  ++         ++  + +    L      + I  D +
Sbjct: 405 RVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDEI 463

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVA 257
             D+++ +    E    V  DE  K+VA
Sbjct: 464 S-DALERIIAGPEKKNAVVSDEKKKLVA 490


>gi|297623567|ref|YP_003705001.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297164747|gb|ADI14458.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 634

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 107/305 (35%), Gaps = 35/305 (11%)

Query: 14  SELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
             L + + G ++AK     V   L+N  +   L A +     P  +L+VGP G GKT ++
Sbjct: 149 QTLFKDVAGVEEAKNDLYEVVEFLKNPAKFHALGARI-----PHGVLMVGPPGSGKTHLA 203

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQA 126
           + +A  A  PF  +  + F E+ +VG    ++ RDL +     A  IV     D V  + 
Sbjct: 204 KAVAGEAKVPFFSISGSDFVEM-FVGVGAARV-RDLFESAKKNAPCIVFIDEIDAVGRRR 261

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-------DISNF 179
            +N          G      T      ++   E     I I   +              F
Sbjct: 262 GMNIN-------GGNDEREQTLNALLVEMDGFESKHDIIIIAATNRPDVLDPALLRPGRF 314

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRM---SVQKCYPELMRDESDRLIDMDTVHRD 236
           D         +   E   ++   G+    ++   +V K  P  +  + + L++   +   
Sbjct: 315 DRQVVVDAPDVKGREAILQIHARGKPLSQKVDLRTVAKRTPGFVGADLENLLNEAALVAA 374

Query: 237 SIQMVENYGIVFLDE-FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
                E      +DE  D++V         +S +  ++ +    EG      +   + D 
Sbjct: 375 RAGRKEILPA-DIDEAADRVVMGPERRSRVISPK--EKKITAYHEGGHALAAFLLPHADP 431

Query: 296 ILFIA 300
           +  I 
Sbjct: 432 VHKIT 436


>gi|167856351|ref|ZP_02479079.1| cell division protease FtsH-like protein [Haemophilus parasuis
           29755]
 gi|167852518|gb|EDS23804.1| cell division protease FtsH-like protein [Haemophilus parasuis
           29755]
          Length = 645

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P  I + L   + G  +AK  VA     LR+  + Q+L   +     PK IL+VGP G G
Sbjct: 149 PDRIKTRL-TDVAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGTG 202

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT +++ +A  A  PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 203 KTLLAKAIAGEANVPFFTMAGSDFVEM-FVGVGASRV-RDLFDQAKKN 248


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           ++P E        + G ++AK   R +   LR+  + QQ+        +PK +LLVGP G
Sbjct: 164 YTPGEKSRVTFDDVAGMENAKLELREIVDYLRDPKKFQQIGGK-----VPKGVLLVGPPG 218

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT ++R +A  AG  F+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 219 TGKTLLARAVAGEAGVTFLSITASQFIEM-FVGVGAGRV-RDLFATA 263


>gi|332086388|gb|EGI91535.1| cell division protease ftsH [Shigella dysenteriae 155-74]
          Length = 536

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 34  LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 90

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 91  TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 148


>gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
 gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
          Length = 609

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 43/287 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +      +R+RR           MPK +LL+GP G GKT ++R +
Sbjct: 159 DVAGCDEAKAELVEIVDYLKTPDRFRRLGGE-------MPKGVLLIGPPGTGKTLLARAV 211

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  AG PF  +  ++F E+ +VG    ++ R+L   A            +E+A       
Sbjct: 212 AGEAGVPFFSISGSEFVEM-FVGVGAARV-RELFVQA------------KEKAPCIIFID 257

Query: 134 ILDALVGKTA------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
            LDA+    A           +   + L + +  D  + + +   ++     D P     
Sbjct: 258 ELDAIGKSRAGAIVGGHDEREQTLNQLLVEMDGFDPRVGVIIMAATNRPETLD-PALLRA 316

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G  +   L  K   +GR+    + V      L  +     +D+  + R +          
Sbjct: 317 GRFDRQVLVDKPDVAGRE--AILRVHAAKVILGPE-----VDLSVIARKTPGFSGADLAN 369

Query: 248 FLDEFDKIVARDSGNGIGVS--REGVQRDLLPLV-EGSSVSTKYGSI 291
            ++E   + AR   + +G++   E V R +  L  +   ++ K   +
Sbjct: 370 AINEAALLAARKDKDAVGMADLEEAVDRIMGGLEKKNRVINPKEKQV 416


>gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 669

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ+ AK+ V   + +  +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 195 KDVAGQEGAKQEVQEIV-DFLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 253 GVPFFSMSGSDFVEM-FVGVGASRV-RDLFHQA 283


>gi|120556262|ref|YP_960613.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326111|gb|ABM20426.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 647

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGVDEAKEDVKELVDFLRDPSKFQRLGGRI-----PKGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 247


>gi|309973145|gb|ADO96346.1| ATP-dependent protease FtsH [Haemophilus influenzae R2846]
          Length = 635

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+  +   R+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVSEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
 gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
          Length = 350

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|304321217|ref|YP_003854860.1| metalloprotease [Parvularcula bermudensis HTCC2503]
 gi|303300119|gb|ADM09718.1| metalloprotease [Parvularcula bermudensis HTCC2503]
          Length = 638

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + R  +        +PK  LLVGP G GKT ++R +A  A
Sbjct: 153 DDVAGIDEAKEELEEIVE--YLRDPMKFQRLGGKIPKGALLVGPPGTGKTLLARAIAGEA 210

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 NVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 257


>gi|332882428|ref|ZP_08450053.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679598|gb|EGJ52570.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 695

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 31/178 (17%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 187 KDVAGQAGAKMEVEEIVEFLKNPKKFTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  + R   + A  I+     D V R +    A
Sbjct: 242 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNPA 300

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               +ER      +L  + G    S        N  ++  K L      D++I +++ 
Sbjct: 301 MGGNDERENTLNQLLTEMDGFGTNSGVIILAATNRVDILDKALLRAGRFDRQIHVDLP 358


>gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 611

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 138/369 (37%), Gaps = 51/369 (13%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ++A+ ++   +   +N  +   + A       PK  LLVGP G GKT ++R +A
Sbjct: 164 DDVAGQEEAEESLVEIVDYLKNPKKYTDIGAK-----CPKGALLVGPPGTGKTLLARAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD---EVREQASI 128
             +  PF  +  ++F E+ +VGR    V ++  +    A  I+     D   + R+ A I
Sbjct: 219 GESHVPFFSIAGSEFVEM-FVGRGAAKVRELFDEAKKNAPCIIFIDEIDTIGKKRDSAGI 277

Query: 129 NAEER-------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +        +L  + G          A +N  E+    L      D++I +E+    
Sbjct: 278 SGNDEREQTLNQLLTEMDGFDGNIGIVMLAATNRPEILDPALLRPGRFDRQIRVELPTLK 337

Query: 174 SDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             I    +   +     ++   L ++        ++   + +     +R   D++   D 
Sbjct: 338 DRIEILKVHARSYKMEDDIDYSLIARSTAGASGAQLANILNEAALRAVRMGHDKVRQED- 396

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI- 291
             ++SI++V        D    I++ +      V+   +   L+  ++  S   +  +I 
Sbjct: 397 -IQESIEVVIAGAQRKQD----ILSPEEK--KRVAYHEIGHALVAALQTGSEPVEKITII 449

Query: 292 -NTDHILFIASGAFHVSR----PADLLPEIQ----GRFPVRVHLKSLNKSDFRLI--LTD 340
             T   L          +      DL+  I     GR    V    ++      I   T+
Sbjct: 450 PRTSGALGYTMQVPKDEKNLYTREDLINHITTLCGGRAAEEVIFNEVSTGAANDIEKATE 509

Query: 341 TESNLILQY 349
           T  ++I QY
Sbjct: 510 TARSMITQY 518


>gi|212550944|ref|YP_002309261.1| cell division protease FtsH [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549182|dbj|BAG83850.1| cell division protease FtsH [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 654

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 33/191 (17%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 195 RDVAGLSEAKQEVEEIVDFLKNSNKYTGLGAKI-----PKGVLLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQA--- 126
             A  PF  +  + F E+ +VG    ++ RDL   A      I+     D V R +    
Sbjct: 250 GEADVPFFSISGSDFVEM-FVGVGASRV-RDLFHQAKEKYPCIIFIDEIDAVGRARGKNP 307

Query: 127 -------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                    N   ++L  + G  + S        N  ++  K L      D++I++E+ +
Sbjct: 308 IMGTNDERENTLNQLLTEMDGFGSNSGVIVLAATNRVDILDKALLRAGRFDRQINVELPE 367

Query: 172 TSSDISNFDIP 182
            +     F + 
Sbjct: 368 LNDRKEIFAVH 378


>gi|77464236|ref|YP_353740.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|126463078|ref|YP_001044192.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559125|ref|ZP_08413447.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N]
 gi|77388654|gb|ABA79839.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|126104742|gb|ABN77420.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332276837|gb|EGJ22152.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N]
          Length = 633

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|326927547|ref|XP_003209953.1| PREDICTED: paraplegin-like [Meleagris gallopavo]
          Length = 752

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 29/187 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+N  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 266 KDVAGMHEAKMEVKEFVDYLKNPDRYLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 320

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS----- 127
             A  PF+ +  ++F E+  G     V  + R+    A  IV     D V ++ S     
Sbjct: 321 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSG 380

Query: 128 -INAEER-----ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
             NAEE      +L  + G          A++N  +V    L      D+ I I++    
Sbjct: 381 FANAEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQ 440

Query: 174 SDISNFD 180
                F+
Sbjct: 441 ERREIFE 447


>gi|328543446|ref|YP_004303555.1| endopeptidase Clp ATP-binding chain A [polymorphum gilvum
           SL003B-26A1]
 gi|326413190|gb|ADZ70253.1| Endopeptidase Clp ATP-binding chain A [Polymorphum gilvum
           SL003B-26A1]
          Length = 813

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL R + GQ  A   +A A++         A LR+   P  + L  GPTGVGKT ++R+
Sbjct: 464 DELKRVVYGQDKAIDTLASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVARQ 517

Query: 73  LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           LA   G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 LASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|119510170|ref|ZP_01629309.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119465231|gb|EAW46129.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 291

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +  +L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 177 DVAGVDEAKAELEEIIDFLKNAGKYTRLGAKI-----PKGVLLVGPPGTGKTMLAKAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 232 EAGVPFFSISGSEFIEL-FVGVGASRV-RDLFDQA 264


>gi|312880490|ref|ZP_07740290.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310783781|gb|EFQ24179.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 624

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           RE+       + G  +AK+ +A  +   + +            PK +LL GP G GKT +
Sbjct: 174 RELPETRFADVAGCDEAKQDLAETV--SYLKDPDTFLAWGVRPPKGVLLFGPPGTGKTLL 231

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQ 125
           +R +A  AG PF +   + F E+ YVG     V +I +     A  +V     D + R +
Sbjct: 232 ARAVAGEAGVPFFRAAGSDFVEM-YVGVGASRVREIFQRARRHAPCMVFIDEIDAIGRAR 290

Query: 126 ASINA---EER 133
            +      EER
Sbjct: 291 GASATGGNEER 301


>gi|193211748|ref|YP_001997701.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193085225|gb|ACF10501.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 703

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 184 LYENLDEHTRISFKDVAGLDEAKGEVMEVVDFLKDPKKYTKLGGKL-----PKGVLLVGP 238

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 239 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDE 297

Query: 119 RDEV 122
            D V
Sbjct: 298 IDAV 301


>gi|126641955|ref|YP_001084939.1| ATP-binding protease component [Acinetobacter baumannii ATCC 17978]
          Length = 718

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 410 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 464

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 465 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 517


>gi|3426264|gb|AAC32257.1| cell division protein [Mycobacterium smegmatis]
          Length = 769

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 720

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEAIEELQEIKEFLENPGKFQAMGAKI-----PKGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 798

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A
Sbjct: 171 KDVAGADEAVEELQEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 GEAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|126733589|ref|ZP_01749336.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
 gi|126716455|gb|EBA13319.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
          Length = 633

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 147 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 201

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 202 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 251


>gi|292491672|ref|YP_003527111.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291580267|gb|ADE14724.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 641

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 34/267 (12%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AKR +   +        + P   ++    +PK ILL+GP G GKT +++ +A
Sbjct: 184 EDVAGVENAKRDLHEIVDY-----LKDPGRFKEVGAKIPKGILLMGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  + F E+ +VG     V  + +   + A +I+     D V R +     
Sbjct: 239 GEAGVPFYSISGSDFIEM-FVGVGAARVRDMFKAAKEEAPSILFIDEIDSVGRARGTGLG 297

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      +IL  + G  A          N  +V    L      D+++ +E+ D  
Sbjct: 298 GGHDEREQTLNQILGEMDGFAAQENVVVLAATNRPDVLDPALLRPGRFDRKVILELPDKK 357

Query: 174 SDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD- 231
           +     ++         ++  E+ +K         +   V +    L   E  + +DMD 
Sbjct: 358 ARQKVLEVHAKEVPLAEDVDLEVIAKRTVGFSGADLANLVNEAA-LLTARERKKKVDMDM 416

Query: 232 -TVHRDSIQMVENYGIVFLDEFDKIVA 257
             + RD I +      +  +E  K+VA
Sbjct: 417 LNLARDKIVLGAERETILSEEEKKLVA 443


>gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 631

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 176 DDVAGVDEAKEELQEVVTFLKKPEKFTAVGA--RIPKGVLLVGPPGTGKTMLAKAIAGEA 233

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + R   + A  ++     D V
Sbjct: 234 GVPFFSISGSEFVEM-FVGVGASRVRDLFRKAKENAPCLIFIDEIDAV 280


>gi|237748251|ref|ZP_04578731.1| ftsH protein [Oxalobacter formigenes OXCC13]
 gi|229379613|gb|EEO29704.1| ftsH protein [Oxalobacter formigenes OXCC13]
          Length = 650

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           ++I    D  + G  +AK  +   +    +  +    L   + P  ILLVGP G GKT +
Sbjct: 157 KDIKVTFDD-VAGVDEAKEELQEVV-GFLKNPKTYGRLGGRI-PHGILLVGPPGTGKTLL 213

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 ARAVAGEAGVPFFSINGSEFVEM-FVGVGAARV-RDLFEQA 252


>gi|50289553|ref|XP_447208.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526517|emb|CAG60141.1| unnamed protein product [Candida glabrata]
          Length = 750

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  +  QL A +     P+  +L GP G GKT +++  A
Sbjct: 278 KDVAGCDEAKQEIMEFVHFLKNPAKYTQLGAKI-----PRGAILSGPPGTGKTLLAKATA 332

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF+ V  ++F E+ +VG    ++ RDL + A
Sbjct: 333 GEAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFEQA 366


>gi|302818219|ref|XP_002990783.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
 gi|300141344|gb|EFJ08056.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii]
          Length = 691

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 39/264 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  AG
Sbjct: 229 DVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEAG 286

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA--------- 126
            PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q          
Sbjct: 287 VPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND 345

Query: 127 -SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
                  ++L  + G          A +N  ++    L      D+++ ++V D      
Sbjct: 346 EREQTLNQLLTEMDGFEGNTGVIVIAATNRSDILDSALLRPGRFDRQVTVDVPDVRGRTE 405

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
              + G       ++                   V    P     +   L++   +    
Sbjct: 406 ILKVHGANKKFEEDV---------------KLDIVAMRTPGFSGADLANLLNEAAILAGR 450

Query: 238 IQMVENYGIVFLDEFDKIVARDSG 261
                       D  D+IVA   G
Sbjct: 451 RGRSAISAKEVDDSIDRIVAGMEG 474


>gi|215483240|ref|YP_002325447.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii AB307-0294]
 gi|332853310|ref|ZP_08434689.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013150]
 gi|213987093|gb|ACJ57392.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii AB307-0294]
 gi|332728709|gb|EGJ60072.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013150]
          Length = 743

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 435 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 489

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 490 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 542


>gi|17380916|gb|AAL36270.1| putative AAA-type ATPase [Arabidopsis thaliana]
          Length = 809

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 322 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 376

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 377 GESGVPFLSISGSDFMEM-FVGVGPSRVRHLFQEARQAAPSIIFIDEIDAI 426


>gi|146276618|ref|YP_001166777.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554859|gb|ABP69472.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 633

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|238761762|ref|ZP_04622736.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
 gi|238699876|gb|EEP92619.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
          Length = 607

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|294678708|ref|YP_003579323.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
 gi|294477528|gb|ADE86916.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
          Length = 631

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKN 245


>gi|260565806|ref|ZP_05836289.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M]
 gi|260151179|gb|EEW86274.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M]
          Length = 516

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 29  QDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARSVA 83

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 84  GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 133


>gi|254461530|ref|ZP_05074946.1| cell division protein FtsH [Rhodobacterales bacterium HTCC2083]
 gi|206678119|gb|EDZ42606.1| cell division protein FtsH [Rhodobacteraceae bacterium HTCC2083]
          Length = 637

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
 gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
          Length = 671

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G ++A   +      L+N  + Q L A +     PK +LL
Sbjct: 162 KMITKDTPKTTFA----DVAGSEEAVEELHEIKDFLQNPAKYQALGAKI-----PKGVLL 212

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 213 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 262


>gi|125540508|gb|EAY86903.1| hypothetical protein OsI_08286 [Oryza sativa Indica Group]
          Length = 816

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 341 DIVTFAD--VAGVDEAKEELEEIVEFLRNPERYIRLGA-----RPPRGVLLVGLPGTGKT 393

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL   A
Sbjct: 394 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFARA 434


>gi|18424166|ref|NP_568892.1| ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75170859|sp|Q9FIM2|FTSH9_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 9,
           chloroplastic; Short=AtFTSH9; Flags: Precursor
 gi|9759220|dbj|BAB09632.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|16648973|gb|AAL24338.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|332009729|gb|AED97112.1| cell division protease ftsH-9 [Arabidopsis thaliana]
          Length = 806

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 33/180 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  R  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 330 DVAGVDEAKEELEEIVEFLKNPDRYVRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 384

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRD 120
            +  PFI    ++F E+ YVG    ++ RDL                  A+   R+ +  
Sbjct: 385 ESDVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGKFR 442

Query: 121 EVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
            V          ++L  + G  ++S        N  +V    LR     D+ + +E  D 
Sbjct: 443 MVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDK 502


>gi|120553945|ref|YP_958296.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|310943138|sp|A1TZE0|FTSH_MARAV RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|120323794|gb|ABM18109.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
          Length = 633

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G + AKR ++  +      +++RR          +MPK +LLVGP G GKT ++R 
Sbjct: 186 DDVAGIESAKRDISEIIDFLKSPDKYRRLGA-------VMPKGVLLVGPPGTGKTLLARA 238

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  A  PF  +  ++F E+ +VG    ++ RD+   A
Sbjct: 239 IAGEAEVPFFSISASEFIEM-FVGVGAARV-RDMFQTA 274


>gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 603

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G+ +AK  +   +    N  + + + A +     PK ILLVGP G GKT +++ +A
Sbjct: 165 DDVAGEDEAKENLTEIVDYLHNPNKYKDIGASM-----PKGILLVGPPGTGKTMLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 220 GEANVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 253


>gi|242066542|ref|XP_002454560.1| hypothetical protein SORBIDRAFT_04g033360 [Sorghum bicolor]
 gi|241934391|gb|EES07536.1| hypothetical protein SORBIDRAFT_04g033360 [Sorghum bicolor]
          Length = 818

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 337 DIVTFAD--VAGVDEAKEELEEIVEFLRNPDRYIRLGA-----RPPRGVLLVGLPGTGKT 389

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL   A
Sbjct: 390 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFARA 430


>gi|167770587|ref|ZP_02442640.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
 gi|167667182|gb|EDS11312.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM
           17241]
          Length = 603

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK ++A  +    N  + +++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKESLAEIVDYLHNPDKYREIGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 EASVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 253


>gi|320536058|ref|ZP_08036116.1| phage putative tail component protein [Treponema phagedenis F0421]
 gi|320147108|gb|EFW38666.1| phage putative tail component protein [Treponema phagedenis F0421]
          Length = 678

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +   ++  ++ P+ +LLVGP G GKT ++R +A  AG
Sbjct: 206 DVAGVDEAKEELMEVV-DFLKYPKKYTEIGGKI-PRGVLLVGPPGTGKTLLARAVAGEAG 263

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF ++  + F E+ +VG    ++ RDL   A            RE+A        LDA+
Sbjct: 264 VPFFRISGSDFVEM-FVGVGASRV-RDLFKQA------------REKAPCIIFIDELDAI 309

Query: 139 VGKTATSNTREVFRKK 154
                 S      R++
Sbjct: 310 GKSRINSINSNDEREQ 325


>gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 684

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 165 DVAGEDEAKENLSEIVDYLHNPSKYTSIGASM-----PKGVLLVGPPGTGKTMLAKAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA 130
            A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++ +  A
Sbjct: 220 EANVPFFSIAGSEFVEM-FVGMGASKVRDLFKQAKEKAPCIVFIDEIDAIGQKRTGAA 276


>gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 502

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 27/183 (14%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI     R + G ++AK   + +   LRN  +   L   L     PK +LLVGP G G
Sbjct: 64  PEEIHVTF-RDVKGAEEAKQELKEIVAFLRNPEKFSILGGKL-----PKGVLLVGPPGTG 117

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  A  PF      +F E  +G   R V  + +   +VA  ++     D V 
Sbjct: 118 KTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKEVAPCVIFIDEIDSVG 177

Query: 124 EQ--------ASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI 167
            +         +     ++L  + G             N R    K L      D E+ +
Sbjct: 178 SKRTNSTLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRRNDLDKALLRPGRFDVEVMV 237

Query: 168 EVA 170
            + 
Sbjct: 238 PIP 240


>gi|315446252|ref|YP_004079131.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1]
 gi|315264555|gb|ADU01297.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1]
          Length = 789

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|307946409|ref|ZP_07661744.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp.
           TrichSKD4]
 gi|307770073|gb|EFO29299.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp.
           TrichSKD4]
          Length = 824

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ DA   +A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 466 LSAELKRVVYGQNDAIDTLASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA   G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 RQLASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|301107181|ref|XP_002902673.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262098547|gb|EEY56599.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 874

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 27/185 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + +  R Q+   DL  ++ PK  LLVGP G GKT +++  A  A
Sbjct: 383 KDVAGVDEAKKEIMEFV-DFLRNQKRFTDLGAKI-PKGALLVGPPGTGKTLLAKATAGEA 440

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
             PF  +  + F E+ +VG     V  + ++    A  IV     D V  +A        
Sbjct: 441 SVPFFSISGSDFIEM-FVGVGPSRVRDLFKEARANAPCIVFIDEIDAV-ARARSKGNFSG 498

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G  ++         N  ++  K +      D++I ++V D   
Sbjct: 499 GNDERENTLNQLLVEMDGFNSSEGVVVLAGTNRADILDKAILRPGRFDRQITVDVPDIKG 558

Query: 175 DISNF 179
               F
Sbjct: 559 RREIF 563


>gi|260576640|ref|ZP_05844627.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
 gi|259021125|gb|EEW24434.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2]
          Length = 640

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|169795755|ref|YP_001713548.1| ATP-binding protease component [Acinetobacter baumannii AYE]
 gi|184158340|ref|YP_001846679.1| ATPase [Acinetobacter baumannii ACICU]
 gi|213157553|ref|YP_002319598.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB0057]
 gi|239503975|ref|ZP_04663285.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB900]
 gi|260554818|ref|ZP_05827039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii ATCC 19606]
 gi|301344684|ref|ZP_07225425.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB056]
 gi|301511219|ref|ZP_07236456.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB058]
 gi|301595569|ref|ZP_07240577.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB059]
 gi|332871193|ref|ZP_08439770.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013113]
 gi|332873456|ref|ZP_08441408.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6014059]
 gi|169148682|emb|CAM86548.1| ATP-binding protease component [Acinetobacter baumannii AYE]
 gi|183209934|gb|ACC57332.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|193077510|gb|ABO12337.2| ATP-binding protease component [Acinetobacter baumannii ATCC 17978]
 gi|213056713|gb|ACJ41615.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           baumannii AB0057]
 gi|260411360|gb|EEX04657.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii ATCC 19606]
 gi|322508667|gb|ADX04121.1| clpA [Acinetobacter baumannii 1656-2]
 gi|323518275|gb|ADX92656.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332731678|gb|EGJ62961.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6013113]
 gi|332738344|gb|EGJ69219.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           baumannii 6014059]
          Length = 758

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|118473106|ref|YP_890326.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174393|gb|ABK75289.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
          Length = 770

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|115447609|ref|NP_001047584.1| Os02g0649700 [Oryza sativa Japonica Group]
 gi|75323554|sp|Q6H6R9|FTSH7_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 7,
           chloroplastic; Short=OsFTSH7; Flags: Precursor
 gi|49388450|dbj|BAD25580.1| putative cell division protein FtsH3 [Oryza sativa Japonica Group]
 gi|113537115|dbj|BAF09498.1| Os02g0649700 [Oryza sativa Japonica Group]
          Length = 822

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 341 DIVTFAD--VAGVDEAKEELEEIVEFLRNPERYIRLGA-----RPPRGVLLVGLPGTGKT 393

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL   A
Sbjct: 394 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFARA 434


>gi|260550321|ref|ZP_05824533.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
 gi|260406633|gb|EEX00114.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
          Length = 758

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|187830110|ref|NP_001120721.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093209|gb|ABY82590.1| filamentation temperature-sensitive H 2B [Zea mays]
 gi|166093213|gb|ABY82592.1| filamentation temperature-sensitive H 2B [Zea mays]
          Length = 677

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 214 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 271

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q         
Sbjct: 272 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 330

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 331 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 390

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + G       ++S     +   G                       L++   +   
Sbjct: 391 EILKVHGSNKKFDSDVSLDVIAMRTPGFSGAD---------------LANLLNEAAILAG 435

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 436 RRGRTAISSKEIDDSIDRIVAGMEG 460


>gi|254432006|ref|ZP_05045709.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
 gi|197626459|gb|EDY39018.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
          Length = 649

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +P   VS     + G  +AK  +      L++  R   + A +     PK +LL+GP G
Sbjct: 164 LAPENTVSVRFEDVAGIAEAKEELQEVVTFLKSPERYTAIGARI-----PKGVLLIGPPG 218

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT ++R +A  AG PF  +  ++F E+ +VG     V  + R     A  I+     D
Sbjct: 219 TGKTLLARAIAGEAGVPFFSMAASEFVEM-FVGVGASRVRDLFRKAKAKAPCIIFIDEID 277

Query: 121 EV 122
            V
Sbjct: 278 AV 279


>gi|3461848|gb|AAC33234.1| putative AAA-type ATPase [Arabidopsis thaliana]
          Length = 807

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 320 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 374

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 375 GESGVPFLSISGSDFMEM-FVGVGPSRVRHLFQEARQAAPSIIFIDEIDAI 424


>gi|193582371|ref|XP_001950696.1| PREDICTED: AFG3-like protein 2-like [Acyrthosiphon pisum]
          Length = 764

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++I     + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT 
Sbjct: 274 PKDIDVRF-KDVAGCEEAKIEIMEFV-NFLKNPQQYLDLGAKI-PKGAMLTGPPGTGKTL 330

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++  A  A  PF+ V  ++F E+ +VG     V  +       A  I+     D V ++
Sbjct: 331 LAKATAGEADVPFLSVSGSEFLEM-FVGVGPSRVRDMFTMARKHAPCILFIDEIDAVGKK 389


>gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX]
 gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41
           [Thermobifida fusca YX]
          Length = 682

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A    + +   L+N  + Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 165 DVAGADEAIEELKEIKDFLQNPGKFQSLGAKI-----PKGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|49388451|dbj|BAD25581.1| cell division protein FtsH3-like [Oryza sativa Japonica Group]
          Length = 305

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 69  DIVTFAD--VAGVDEAKEELEEIVEFLRNPERYIRLGA-----RPPRGVLLVGLPGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL   A
Sbjct: 122 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFARA 162


>gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 593

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 22/168 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ +AK   + +   L +  +   + A L     PK  LLVGP G GKT +++ +A  
Sbjct: 154 VEGQDEAKEALKELVDFLHSPKKYTDIGAKL-----PKGALLVGPPGTGKTLLAQAVAGE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  PF  +  ++F E+ +VG     V  + +   + A  IV     D + ++        
Sbjct: 209 ANVPFFSISGSEFVEM-FVGLGAAKVRDLFKQAQEKAPCIVFIDEIDTIGKKRDGA---- 263

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                 G +      +   + L + +  D ++ + +   ++   + D 
Sbjct: 264 ------GFSGNDEREQTLNQLLSEMDGFDSKLGVVILAATNRPDSLDP 305


>gi|242279265|ref|YP_002991394.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
 gi|242122159|gb|ACS79855.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM
           2638]
          Length = 689

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 93/267 (34%), Gaps = 33/267 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  ++  +    +    P         +PK +LLVGP G GKT ++R +A 
Sbjct: 156 EDVAGVDEAKEELSEVV----QFLSEPKKFTRLGGRIPKGVLLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQ------ 125
            AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V  Q      
Sbjct: 212 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFSQGKKNAPCLIFIDEIDAVGRQRGAGLG 269

Query: 126 -ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 E+ +   LV              A +N  +V    L      D+++ +   D  
Sbjct: 270 GGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPTPDVQ 329

Query: 174 SDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDM 230
                  +      +      ++ ++         +   V +      ++  D  +++D 
Sbjct: 330 GRAHILKVHTRKTPLAGEIDLDVIARGTPGFSGADLENLVNEAALYAAKNNQDYVKMVDF 389

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVA 257
           +      +   E   ++  DE  K  A
Sbjct: 390 EEAKDKVLMGRERRSLILTDEEKKTTA 416


>gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3]
 gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3]
          Length = 753

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEAIEELEEIKEFLENPGKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|332160073|ref|YP_004296650.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607367|emb|CBY28865.1| cell division protein FtsH [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664303|gb|ADZ40947.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862036|emb|CBX72202.1| cell division protease ftsH [Yersinia enterocolitica W22703]
          Length = 607

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|313205303|ref|YP_004043960.1| ATP-dependent metalloprotease ftsh [Paludibacter propionicigenes
           WB4]
 gi|312444619|gb|ADQ80975.1| ATP-dependent metalloprotease FtsH [Paludibacter propionicigenes
           WB4]
          Length = 712

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 231 KDVAGLAEAKQEIEEIVSFLKNPLKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 285

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             A  PF  +  + F E+ +VG     V  + R   + A  I+     D V R +     
Sbjct: 286 GEADVPFFSMSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKNPN 344

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                   N   ++L  + G  + S        N  ++  K L      D++I +++ D 
Sbjct: 345 MGSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVDLPDV 404

Query: 173 SSDISNFDIP 182
                 F++ 
Sbjct: 405 HERKQIFNVH 414


>gi|302753920|ref|XP_002960384.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
 gi|302767824|ref|XP_002967332.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300165323|gb|EFJ31931.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300171323|gb|EFJ37923.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
          Length = 628

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 39/269 (14%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 175 DVAGADQAKLELQEVVDFLKNPEKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV-REQA---- 126
            AG PF     ++F E+ +VG    ++ RDL +     A  IV     D V R++     
Sbjct: 230 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLG 287

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G +  S        N  +V    L      D+++ ++  D +
Sbjct: 288 GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVA 347

Query: 174 SDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
             +   ++   G S+G     E  ++         ++  + +    L      + I  D 
Sbjct: 348 GRVRILEVHSKGKSLGKDVDFEKIARRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDE 406

Query: 233 VHRDSIQMV----ENYGIVFLDEFDKIVA 257
           +  D+++ +    E    V  +E  K+VA
Sbjct: 407 IS-DALERIIAGPEKKNAVVSEERKKLVA 434


>gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
 gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
          Length = 793

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPTRYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|224025880|ref|ZP_03644246.1| hypothetical protein BACCOPRO_02626 [Bacteroides coprophilus DSM
           18228]
 gi|224019116|gb|EEF77114.1| hypothetical protein BACCOPRO_02626 [Bacteroides coprophilus DSM
           18228]
          Length = 681

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ  AK+ V   +    ++ Q   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 189 KDVAGQAAAKQEVEEIVE-FLKQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             PF  +  + F E+ +VG     V  + R   + A  I+     D V
Sbjct: 247 DVPFFSISGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAV 293


>gi|145222008|ref|YP_001132686.1| ATP-dependent metalloprotease FtsH [Mycobacterium gilvum PYR-GCK]
 gi|145214494|gb|ABP43898.1| membrane protease FtsH catalytic subunit [Mycobacterium gilvum
           PYR-GCK]
          Length = 794

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|126737231|ref|ZP_01752966.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6]
 gi|126721816|gb|EBA18519.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6]
          Length = 639

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|30684118|ref|NP_850129.1| ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase
           [Arabidopsis thaliana]
 gi|75328225|sp|Q84WU8|FTSH3_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 3,
           mitochondrial; Short=AtFTSH3; Flags: Precursor
 gi|27754237|gb|AAO22572.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|330253114|gb|AEC08208.1| cell division protease ftsH-3 [Arabidopsis thaliana]
          Length = 809

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 322 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 376

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 377 GESGVPFLSISGSDFMEM-FVGVGPSRVRHLFQEARQAAPSIIFIDEIDAI 426


>gi|124267249|ref|YP_001021253.1| vesicle-fusing ATPase [Methylibium petroleiphilum PM1]
 gi|310943139|sp|A2SHH9|FTSH_METPP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|124260024|gb|ABM95018.1| Vesicle-fusing ATPase [Methylibium petroleiphilum PM1]
          Length = 617

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+     +L A +     PK +LL+GPTG GKT ++R +A
Sbjct: 158 DDVAGVDEAKAELQEIVDFLRDPKAHGRLGARM-----PKGVLLMGPTGTGKTLLARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 GEAGVPFFSISGSEFIEM-FVGVGAARV-RDLFEQA 246


>gi|254560086|ref|YP_003067181.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
 gi|254267364|emb|CAX23199.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           DM4]
          Length = 620

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 22/123 (17%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   R +   L+N  +  +L   +     PK +LLVGP G GKT +++ +A 
Sbjct: 165 DVAGIDEAKDELREIVEFLKNPEQYGRLGGRM-----PKGVLLVGPPGTGKTLLAKAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ +VG    ++ RDL + A            R  A I  +E  L
Sbjct: 220 EAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA----------RQRAPAIIFIDE--L 265

Query: 136 DAL 138
           DAL
Sbjct: 266 DAL 268


>gi|84687701|ref|ZP_01015574.1| ATP-dependent metalloprotease FtsH [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664284|gb|EAQ10775.1| ATP-dependent metalloprotease FtsH [Rhodobacterales bacterium
           HTCC2654]
          Length = 630

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            + RE     D  + G  +AK  +      LRN  +  +L   +     PK  LLVGP G
Sbjct: 133 LTEREGRVTFDD-VAGIDEAKEELQEIVEFLRNPQKFSRLGGQI-----PKGALLVGPPG 186

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT ++R +A  AG PF  +  + F E+ +VG     V  +       A  IV     D
Sbjct: 187 TGKTLLARSVAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEID 245

Query: 121 EV 122
            V
Sbjct: 246 AV 247


>gi|113476779|ref|YP_722840.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|122964671|sp|Q10ZF7|FTSH_TRIEI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110167827|gb|ABG52367.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 667

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A 
Sbjct: 201 LFEDVAGIEEAKEELQEVVSFLKKPEKFTAIGA--KIPKGVLLVGPPGTGKTLLAKAIAG 258

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 259 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAV 307


>gi|116750857|ref|YP_847544.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699921|gb|ABK19109.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophobacter fumaroxidans MPOB]
          Length = 607

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 42/263 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +EI +     + G  +AK  +   +   +   R Q L   +     PK +LLVGP G GK
Sbjct: 149 KEIDTRF-EDVAGADEAKAELVEIVDYLKEPGRYQHLGGRM-----PKGVLLVGPPGTGK 202

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A  A  PF  +  ++F E+ +VG    ++ R+L   A            RE+A
Sbjct: 203 TLLARAVAGEASVPFFTISGSEFVEM-FVGVGAARV-RELFHQA------------REKA 248

Query: 127 SINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                   LDA+                +   + L + +  D  + + +   ++     D
Sbjct: 249 PCIIFIDELDAIGKARGALTIGGHDEREQTLNQLLVEMDGFDPRVGVVILAATNRPETLD 308

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DM 230
            P     G  +   L  +    GR+  +++ V+K    L      ++I          D+
Sbjct: 309 -PALLRAGRFDRQVLVDRPDVIGREAILKIHVKKVK--LGEQVDLKVIAQKTPGFSGADL 365

Query: 231 DTVHRDSIQMVENYGIVFLDEFD 253
             V  ++  +        +D  D
Sbjct: 366 ANVINEAALLAARKNKAAIDMQD 388


>gi|225434670|ref|XP_002279721.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 818

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  R  ++ A       P+ +LLVG  G GKT +++ +A 
Sbjct: 341 DVAGVDEAKEELEEIVEFLRNPDRYVRVGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 395

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV------REQA 126
            A  PFI    ++F E+ YVG     V  +       A +I+     D V      R + 
Sbjct: 396 EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 454

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT- 172
                      ++L  + G  + S        N  +V    LR     D+ + +E  D  
Sbjct: 455 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDRI 514

Query: 173 ------SSDISNFDIPGGASVGILNLSEL 195
                    +S  ++P G  V + +++ +
Sbjct: 515 GREAILKVHVSKKELPLGEDVDLSDIASM 543


>gi|160891209|ref|ZP_02072212.1| hypothetical protein BACUNI_03657 [Bacteroides uniformis ATCC 8492]
 gi|270294492|ref|ZP_06200694.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481095|ref|ZP_07940174.1| ATP-dependent metallopeptidase HflB [Bacteroides sp. 4_1_36]
 gi|156859430|gb|EDO52861.1| hypothetical protein BACUNI_03657 [Bacteroides uniformis ATCC 8492]
 gi|270275959|gb|EFA21819.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902808|gb|EFV24683.1| ATP-dependent metallopeptidase HflB [Bacteroides sp. 4_1_36]
          Length = 670

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 28/197 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP +I     + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT
Sbjct: 184 SPIKIT---FKDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKT 238

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-R 123
            +++ +A  A  PF  +  + F E+ +VG     V  + R   + A  IV     D V R
Sbjct: 239 LLAKAVAGEANVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGR 297

Query: 124 EQASINA----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEI 165
            +A   A    +ER      +L  + G  + S        N  +V  K L      D++I
Sbjct: 298 ARAKAAAMGGNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQI 357

Query: 166 DIEVADTSSDISNFDIP 182
            +++ D +     F + 
Sbjct: 358 HVDLPDLNERKEVFGVH 374


>gi|319409312|emb|CBI82956.1| cell division protein FtsH [Bartonella schoenbuchensis R1]
          Length = 684

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVDFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|315634355|ref|ZP_07889642.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
 gi|315476945|gb|EFU67690.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
          Length = 644

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  VA  +   R   + Q L   +     PK IL+VGP G
Sbjct: 140 MTQEQIKTTF-ADVAGCDEAKEEVAEIVDFLREPKKFQNLGGKI-----PKGILMVGPPG 193

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 194 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 241


>gi|146313246|ref|YP_001178320.1| ATP-dependent metalloprotease [Enterobacter sp. 638]
 gi|145320122|gb|ABP62269.1| membrane protease FtsH catalytic subunit [Enterobacter sp. 638]
          Length = 644

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKDEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
          Length = 693

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 288

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 289 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 347

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 348 DEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRT 407

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S                  +    P     +   L++   +   
Sbjct: 408 EILKVHAGNKKFDSDVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 452

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 453 RRGKTAIASKEIDDSIDRIVAGMEG 477


>gi|33519575|ref|NP_878407.1| cell division protein FtsH [Candidatus Blochmannia floridanus]
 gi|33517238|emb|CAD83621.1| cell division protein FtsH [Candidatus Blochmannia floridanus]
          Length = 644

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I +  D  + G  +AK   + +   LR   + Q+L   +     PK ILL+GP G GKT
Sbjct: 148 QIKTTFDD-VAGCDEAKEEVKELVDYLREPNKFQKLGGKI-----PKGILLIGPPGTGKT 201

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 202 LLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 242


>gi|21672930|ref|NP_660995.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
           tepidum TLS]
 gi|54035862|sp|Q8KG79|CLPB1_CHLTE RecName: Full=Probable chaperone protein ClpB 1
 gi|21645986|gb|AAM71337.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
           tepidum TLS]
          Length = 438

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I SEL R ++GQ +A RAV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IESELHRRVVGQDEAVRAVSDAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220


>gi|315186428|gb|EFU20188.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Spirochaeta
           thermophila DSM 6578]
          Length = 758

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 22/229 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL   + GQ +A  AV  A+    +R +     R +    + L VGPTGVGKT +
Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAI----KRAR-AGFRRPDKPVASFLFVGPTGVGKTEL 506

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +R LA + G P ++ +++++ E            GYVG     ++ D V    + V    
Sbjct: 507 ARSLADIMGVPLLRFDMSEYQEKHTVSRLLGSPPGYVGYEEGALLTDAVRKHPHAVL--L 564

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T NT +    +     ++      E+      +  
Sbjct: 565 LDEI-EKAHPDIFNVLLQVMDYATITDNTGKKADFRNIVLIMTSNAGAREL---GQRMIG 620

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           F         I++  E         R  K+ +  +     + +     L
Sbjct: 621 FGERVMQEESIIHAVEQLFSPEFRNRLDKVIVFKRLAPEIVEQIVRKEL 669


>gi|302785487|ref|XP_002974515.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
 gi|300158113|gb|EFJ24737.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii]
          Length = 597

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 135 DVAGVDEAKQDFMEVVEFLKKPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIAG 189

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q       
Sbjct: 190 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 248

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G          A +N  ++    L      D+++ ++V D   
Sbjct: 249 GNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRSDILDAALLRPGRFDRQVTVDVPDVRG 308

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                 + G       ++                   V    P     +   L++   + 
Sbjct: 309 RTEILKVHGANKKFEEDV---------------KLDIVAMRTPGFSGADLANLLNEAAIL 353

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSG 261
                          D  D+IVA   G
Sbjct: 354 AGRRGRTAISAKEVDDSIDRIVAGMEG 380


>gi|238750120|ref|ZP_04611623.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
 gi|238711664|gb|EEQ03879.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
          Length = 607

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|148653389|ref|YP_001280482.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Psychrobacter
           sp. PRwf-1]
 gi|148572473|gb|ABQ94532.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter
           sp. PRwf-1]
          Length = 854

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L+R + GQ +A + ++ A++              +    + +  GPTGVGKT +S+
Sbjct: 531 LERDLNRLVFGQDEAIKTLSDAIK-----LSRAGLKSADKPIGSFMFAGPTGVGKTEVSK 585

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +LA L G   I+ +++++ E            GYVG +   ++ + ++   + 
Sbjct: 586 QLANLMGIELIRFDMSEYMEAHTASRLIGAPPGYVGFDQGGLLTEKINQHPHC 638


>gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 667

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ+ AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 195 KDVAGQEGAKQEVQEIVE-FLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 253 GVPFFSMSGSDFVEM-FVGVGASRV-RDLFHQA 283


>gi|221640120|ref|YP_002526382.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides
           KD131]
 gi|221160901|gb|ACM01881.1| Membrane protease FtsH catalytic subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 623

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 144 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 198

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 199 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 248


>gi|300023923|ref|YP_003756534.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525744|gb|ADJ24213.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 651

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+  LLVGP G GKT I+R +A
Sbjct: 160 DDVAGVDEAKSDLEEIVEFLRDPQKFQRLGGRI-----PRGCLLVGPPGTGKTLIARAVA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 215 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 270

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 271 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGIIIIAATNRPDVLDPALLRPGRF 321

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR+K +R+ ++K
Sbjct: 322 DRQIMVPNPDVNGREKILRVHMKK 345


>gi|253700538|ref|YP_003021727.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251775388|gb|ACT17969.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 598

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++  +   L   +     P  +LLVGP G GKT ++R +A
Sbjct: 147 NDVAGAEEAKAELLDTVEFLKDPAKFSALGGKM-----PTGVLLVGPPGTGKTLLARAVA 201

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA 130
             A  PF  +  ++F E+ YVG     V  +       A  IV     D V  +     
Sbjct: 202 GEADVPFFSISGSEFVEM-YVGVGASRVRDLFAQAKKAAPCIVFIDEIDAVGRKRDAAV 259


>gi|15602303|ref|NP_245375.1| hypothetical protein PM0438 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720692|gb|AAK02522.1| FtsH [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 639

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 140 MTQEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPGKFQKLGGKI-----PKGILMVGPPG 193

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 194 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEID 252

Query: 121 EV 122
            V
Sbjct: 253 AV 254


>gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 654

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK+ ++     LRN  R  +  A       P+ +L+VGP G GKT ++R +A 
Sbjct: 189 DVAGYEGAKQEISEVVDFLRNPDRYARAGAK-----GPRGVLMVGPPGTGKTLLARAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF+ V  + F E+ +VG    ++ RDL   A
Sbjct: 244 EAEVPFLSVTGSSFVEM-FVGVGASRV-RDLFAEA 276


>gi|37522147|ref|NP_925524.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213147|dbj|BAC90519.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 630

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   ++   +R +    +  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 174 DDVAGIDEAKEELQEVVQ-FLKRPERFTAVGAKI-PKGVLLVGPPGTGKTLLAKAIAGEA 231

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 232 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 278


>gi|238787588|ref|ZP_04631386.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
 gi|238724375|gb|EEQ16017.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
          Length = 607

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|37538489|gb|AAQ93011.1| FtsH-like protein precursor [Solanum lycopersicum]
          Length = 708

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 99/268 (36%), Gaps = 37/268 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLV P G GKT ++R +A 
Sbjct: 255 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVDPPGTGKTLLARAVAG 309

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF     ++F E+ +VG     V  +       A  IV     D V R++      
Sbjct: 310 EAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 368

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G +  S        N  +V    L      D+++ ++  D + 
Sbjct: 369 GNDEREQTINQLLTEMDGFSGNSGVIVSAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 428

Query: 175 DISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
            +    +   G ++      +  ++         ++  + +    L      + I  D +
Sbjct: 429 RVRILQVHSRGKALAEDVDFDKIARRTPGFTGADLQNLMNEAA-ILAARRDLKEISKDEI 487

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVA 257
             D+++ +    E    V  DE  K+VA
Sbjct: 488 S-DALERIIAGPEKKNAVVSDEKKKLVA 514


>gi|47230511|emb|CAF99704.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 826

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+N  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 221 KDVAGMHEAKMEVKEFVDYLKNPERYLQLGAK-----VPKGSLLLGPPGCGKTLLAKAVA 275

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + ++    A  IV     D V ++
Sbjct: 276 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARSRAPCIVYIDEIDAVGKK 328


>gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
 gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
          Length = 799

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|220908960|ref|YP_002484271.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219865571|gb|ACL45910.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 631

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +    + ++  A      +PK +LL+GP G GKT +++ +A  A
Sbjct: 166 EDVAGIEEAKEELQEVVTFLKKPEKFTAVGA--RIPKGVLLIGPPGTGKTLLAKAIAGEA 223

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   D A  +V     D V
Sbjct: 224 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCLVFIDEIDAV 270


>gi|329957559|ref|ZP_08298034.1| putative phage head-tail adaptor [Bacteroides clarus YIT 12056]
 gi|328522436|gb|EGF49545.1| putative phage head-tail adaptor [Bacteroides clarus YIT 12056]
          Length = 687

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR   +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 191 KDVAGLAEAKQEVEEIVEFLREPQKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 245

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  + R   + A  IV     D V R +A   A
Sbjct: 246 GEANVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARAKAAA 304

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      +L  + G  + S        N  +V  K L      D++I +++ D 
Sbjct: 305 MGGNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDL 364

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 365 NERKEVFGVH 374


>gi|302141673|emb|CBI18876.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 110 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 164

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 165 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 197


>gi|224541457|ref|ZP_03681996.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525615|gb|EEF94720.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM
           15897]
          Length = 652

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVA--IA-LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +   +A L+N  +  ++ A +     P+ +LLVGP G GKT ++R +A 
Sbjct: 172 DVAGADEEKEELTELVAFLKNPKKFTEMGAKI-----PRGVLLVGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 227 EANVPFYSISGSEFVEM-FVGVGAGRVRDMFKKAKENAPCIIFIDEIDAV 275


>gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 753

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 166 DVAGADEAIEELQEIKEFLENPGKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 221 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 253


>gi|303327632|ref|ZP_07358073.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
 gi|302862572|gb|EFL85505.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3]
          Length = 681

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  ++  +    N  +  +L   +     PK +LLVGP G GKT ++R +A 
Sbjct: 146 DVAGVDEAKEELSEVVEFLSNPKKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVAG 200

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 201 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAV 249


>gi|251792626|ref|YP_003007352.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534019|gb|ACS97265.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 649

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  VA  +   R   + Q L   +     PK IL+VGP G
Sbjct: 143 MTQEQIKTTF-ADVAGCDEAKEEVAEIVDFLREPKKFQNLGGKI-----PKGILMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 244


>gi|218198909|gb|EEC81336.1| hypothetical protein OsI_24516 [Oryza sativa Indica Group]
          Length = 630

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 177 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 232 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 264


>gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
 gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
          Length = 609

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  + Q+L A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEVKEELEEIVEFLKNPKKFQELGAKI-----PKGVLLFGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 214 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 249


>gi|322494944|emb|CBZ30247.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 623

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 2   KLTFNFSPREI-VSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNIL 57
           K  F F  RE+ VS   + + G  +AK  V      L++  R Q L A L     PK +L
Sbjct: 157 KSRFMFK-REMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVL 210

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           L GP GVGKT +++ +A  A  PF+    ++F E+ YVG   +++ R+L   A N 
Sbjct: 211 LDGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQRV-RELFREAHNC 264


>gi|296535982|ref|ZP_06898128.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
 gi|296263693|gb|EFH10172.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
          Length = 640

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 157 EDVAGIDEAKGELEEIVDFLRDPQKFQRLGGKI-----PKGCLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 261


>gi|224046054|ref|XP_002192269.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 924

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 414 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYEDLGAKI-PKGAILTGPPGT 471

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 472 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 530

Query: 122 VREQ 125
           V  +
Sbjct: 531 VGRK 534


>gi|224003627|ref|XP_002291485.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335]
 gi|220973261|gb|EED91592.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335]
          Length = 578

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 26/191 (13%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK +FNF P    +     + G   AK  +A  + +  ++ Q   +    + P   LL G
Sbjct: 112 MKPSFNFHPT--TNITFEDVAGCDGAKLELAEIV-DFLKQPQAYTNNGCRI-PAGALLYG 167

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---AINIVRES 117
           P G GKT +++ +A  AG PF+ +  ++F E+ YVG    ++          A  IV   
Sbjct: 168 PPGTGKTLLAKAVAGEAGVPFVSMSGSEFVEL-YVGVGASRVRELFFQAKKNAPCIVFLD 226

Query: 118 RRDEV-REQASINA---EER------ILDALVGKT--------ATSNTREVFRKKLRDGE 159
             D V R++ +  A   +ER      IL  + G          A +N  ++  + L    
Sbjct: 227 EIDAVGRQRGAGYAGGNDEREQTINQILVEMDGFDGNIGVITLAATNRLDILDEALLRPG 286

Query: 160 ISDKEIDIEVA 170
             D++I +++ 
Sbjct: 287 RFDRKISVDLP 297


>gi|110679380|ref|YP_682387.1| cell division protein FtsH [Roseobacter denitrificans OCh 114]
 gi|109455496|gb|ABG31701.1| cell division protein FtsH [Roseobacter denitrificans OCh 114]
          Length = 641

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|108801733|ref|YP_641930.1| Mername-AA223 peptidase [Mycobacterium sp. MCS]
 gi|119870884|ref|YP_940836.1| Mername-AA223 peptidase [Mycobacterium sp. KMS]
 gi|108772152|gb|ABG10874.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. MCS]
 gi|119696973|gb|ABL94046.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. KMS]
          Length = 783

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 164 DVAGADEAVEELYEIKDFLQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|86148133|ref|ZP_01066432.1| cell division protein FtsH [Vibrio sp. MED222]
 gi|85834050|gb|EAQ52209.1| cell division protein FtsH [Vibrio sp. MED222]
          Length = 376

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I   +   + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G
Sbjct: 144 MSEEQIK-TMFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPG 197

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 198 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 256

Query: 121 EV 122
            V
Sbjct: 257 AV 258


>gi|90424815|ref|YP_533185.1| ATPase AAA-2 [Rhodopseudomonas palustris BisB18]
 gi|90106829|gb|ABD88866.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris BisB18]
          Length = 802

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L R + GQ  A  A+A +++              E    + L  GPTGVGKT +
Sbjct: 458 KHLETTLKRVVFGQDKAIEALAASIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|295091048|emb|CBK77155.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum
           K10]
          Length = 699

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK   + +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 183 KDVAGEDEAKESLKEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 271


>gi|294672833|ref|YP_003573449.1| ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23]
 gi|294473889|gb|ADE83278.1| putative ATP-dependent metalloprotease FtsH [Prevotella ruminicola
           23]
          Length = 673

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ +      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 185 KDVAGQAGAKQEIQEIVDFLKNPQKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 239

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 240 GEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFQQA 273


>gi|296160892|ref|ZP_06843704.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888781|gb|EFG68587.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 495

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK   + +   LRN  R+RR           +PK +L+VG  G GKT +++ 
Sbjct: 10  DDIAGIDEAKAELKQIVEFLRNAERYRRLGG-------KIPKGVLIVGAPGTGKTLLAKA 62

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 63  VAGEAGVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 98


>gi|150397821|ref|YP_001328288.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419]
 gi|150029336|gb|ABR61453.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419]
          Length = 645

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|296166676|ref|ZP_06849101.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897941|gb|EFG77522.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 794

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|229847494|ref|ZP_04467591.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
 gi|229809635|gb|EEP45362.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
          Length = 480

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
 gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
          Length = 801

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
 gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii]
          Length = 595

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 95/275 (34%), Gaps = 45/275 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 133 NDVAGVDEAKQDFMEVVEFLKRPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 187

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 188 GEAGVPFFSISGSEFVEV-FVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 246

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 247 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDAALLRPGRFDRQVSVDVPDVK 306

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S                  +    P     +   L++   +
Sbjct: 307 GRTEILRVHSGNKKFDGDVS---------------LEVIAMRTPGFSGADLANLLNEAAI 351

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
                           D  D+IVA   G  +   +
Sbjct: 352 LAGRRGKTAISAKEIDDSIDRIVAGMEGTTMTDGK 386


>gi|193213633|ref|YP_001999586.1| ATPase AAA-2 domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193087110|gb|ACF12386.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 438

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL R ++GQ +A RAV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEAELHRRVVGQDEAVRAVSDAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220


>gi|162452666|ref|YP_001615033.1| ABC transporter ATPase [Sorangium cellulosum 'So ce 56']
 gi|161163248|emb|CAN94553.1| ATPase with chaperone activity, two ATP-bindingdomains [Sorangium
           cellulosum 'So ce 56']
          Length = 771

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L   I GQ +A + +A A++              E    + L  GPTGVGKT +
Sbjct: 453 KDLEQSLRSVIFGQDEAVKQLASAIK-----LSRAGLRAPEKPIGSFLFSGPTGVGKTEL 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LAR  G  F++ +++++ E            GYVG +   +   L + A        
Sbjct: 508 AKQLARALGIGFLRFDMSEYQERHTVSRLIGAPPGYVGFDRGGL---LTEAAAKTPHAVL 564

Query: 119 RDEVREQASINAEERILDALVGKTATSN--TREVFRKKL 155
             +  E+A  +  + +L  +   T T N   +  FR  +
Sbjct: 565 LLDEIEKAHPDVFQVLLQVMDHGTLTDNNGKKSDFRHMV 603


>gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
 gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
          Length = 639

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +   + R+          +PK +LLVGP G GKT ++R +A  A
Sbjct: 156 KDVAGVDEAKEELKEIIE--FLRESAKFQRLGGRIPKGVLLVGPPGTGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 214 NVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 260


>gi|166364178|ref|YP_001656451.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166086551|dbj|BAG01259.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 631

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   +   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 177 NDVAGVDEAKEDLEEVVTFLKQPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAIA 231

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + R   + A  +V     D V
Sbjct: 232 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAQENAPCLVFIDEIDAV 281


>gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
 gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
          Length = 546

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 155 EDVAGIDEAKQELEEIVEFLKDPQKFQRLGGKI-----PKGCLLVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +       GR+K I++ ++K
Sbjct: 317 DRQVVVPNPDILGREKIIKVHMRK 340


>gi|283795863|ref|ZP_06345016.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|291076494|gb|EFE13858.1| cell division protein FtsH [Clostridium sp. M62/1]
 gi|295115763|emb|CBL36610.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SM4/1]
          Length = 699

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK   + +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 183 KDVAGEDEAKESLKEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 271


>gi|261868122|ref|YP_003256044.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413454|gb|ACX82825.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 609

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   + Q L   +     PK IL+VGP G
Sbjct: 140 MTQEQIKTTF-ADVAGCDEAKEEVGEIVDFLREPKKFQNLGGKI-----PKGILMVGPPG 193

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 194 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEKAKKNAPCLIFIDEID 252

Query: 121 EV 122
            V
Sbjct: 253 AV 254


>gi|253577518|ref|ZP_04854831.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843058|gb|EES71093.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 500

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 100/277 (36%), Gaps = 40/277 (14%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           GQ+ AK+ +  AL +   R +  +        K ILL GP G GKT +++  A    A F
Sbjct: 75  GQESAKQELREAL-DFMVRHEEISKFGI-RPIKGILLTGPPGTGKTLLAKAAAHYTNAVF 132

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK 141
           +    ++F E+ YVG    +I RDL   A    R     E +E A I  +E  ++ + GK
Sbjct: 133 VAASGSEFVEM-YVGVGASRI-RDLFKEA----RTRAAKENKENAIIFIDE--IEVIGGK 184

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 RE  +   +     D             I   D P    +   N  E+    + 
Sbjct: 185 REGGQQREYDQTLNQLLTEMD------------GIYTSDTPRILLIAATNRKEMLDSALL 232

Query: 202 SGRKKKIRMSV-----QKCYPELMRDESDR----LIDMDTVHRDS-------IQMVENYG 245
              +    + V     +     L    +++     +D+D +  +S       ++ V N  
Sbjct: 233 RPGRFDRHIQVDLPDKKGRRHILELHAANKPLREDVDLDKIAEESFGFSGAQLESVMNEA 292

Query: 246 IVF--LDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
            ++   D  D+I        I     G Q D     E
Sbjct: 293 AIYAMRDGVDQITQEHLSVAIDKVLMGEQTDRQAAEE 329


>gi|261856556|ref|YP_003263839.1| ATP-dependent metalloprotease FtsH [Halothiobacillus neapolitanus
           c2]
 gi|261837025|gb|ACX96792.1| ATP-dependent metalloprotease FtsH [Halothiobacillus neapolitanus
           c2]
          Length = 656

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L        +P+ +L+VGP G GKT ++R +A
Sbjct: 157 NDVAGADEAKQDVVELVDFLRDPGKFQRLGG-----RVPRGVLMVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|194748707|ref|XP_001956786.1| GF24400 [Drosophila ananassae]
 gi|190624068|gb|EDV39592.1| GF24400 [Drosophila ananassae]
          Length = 824

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 326 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 383

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 384 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGH 442

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 443 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRA 502

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  G     L+ ++L  K+
Sbjct: 503 SIFKVHLGNLKTELDKNDLSRKM 525


>gi|18402995|ref|NP_564563.1| FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865766|sp|Q39102|FTSH1_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 1,
           chloroplastic; Short=AtFTSH1; Flags: Precursor
 gi|5734790|gb|AAD50055.1|AC007980_20 ATP-dependent metalloprotease [Arabidopsis thaliana]
 gi|20268684|gb|AAM14046.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|21689847|gb|AAM67567.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|332194407|gb|AEE32528.1| cell division protease ftsH-1 [Arabidopsis thaliana]
          Length = 716

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 263 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 317

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 318 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 350


>gi|291566002|dbj|BAI88274.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 621

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G ++AK  +A     L+N  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 165 DDIAGVEEAKAELAEVVDFLKNPQRFLEIGARI-----PKGLLLVGPPGTGKTLMAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 220 GEAGVPFFSISASEFVEL-FVGTGAARV-RDLFEQA 253


>gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 352

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 9   PREIVSELDRY-----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           PR I +E+ R      ++GQ++AKR   + L   + R     +   +  PKN+L  GP G
Sbjct: 91  PRVIETEIVRDITLDDVVGQEEAKRKAKVILE--YLR---NPEKFGKWAPKNVLFYGPPG 145

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            GKT +++ L+  A  PF+ V+ TK     +G   R V ++      +A  IV     D 
Sbjct: 146 TGKTMMAKALSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIVFLDEFDA 205

Query: 122 V 122
           +
Sbjct: 206 I 206


>gi|326485351|gb|EGE09361.1| intermembrane space AAA protease IAP-1 [Trichophyton equinum CBS
           127.97]
          Length = 793

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 347 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 401

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 402 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFAQARAKAPAIIFIDELDAIGAKRNERDA 459

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++D+ + D    +
Sbjct: 460 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGRV 519

Query: 177 SNFD 180
              +
Sbjct: 520 DILN 523


>gi|260913936|ref|ZP_05920410.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
 gi|260632023|gb|EEX50200.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
          Length = 639

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 140 MTQEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPGKFQKLGGKI-----PKGILMVGPPG 193

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 194 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEID 252

Query: 121 EV 122
            V
Sbjct: 253 AV 254


>gi|258651092|ref|YP_003200248.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
 gi|258554317|gb|ACV77259.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A + +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 165 DVAGADEAVQELDEIRDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 604

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            +  PF  +  ++F E+ +VG     V  + R   + A  IV     D + ++
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKK 272


>gi|103487872|ref|YP_617433.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98977949|gb|ABF54100.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 859

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A RAV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 562 KMEETLTQRVIGQDEAVRAVSTAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         ++++++++ E   V R V
Sbjct: 616 TKALARFLFDDDNAMVRIDMSEYMEKHSVARLV 648


>gi|227823304|ref|YP_002827276.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234]
 gi|227342305|gb|ACP26523.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234]
          Length = 645

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|212703544|ref|ZP_03311672.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
 gi|212673044|gb|EEB33527.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098]
          Length = 668

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 14/115 (12%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++  +    N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 157 EDVAGVDEAKDELSEVVEFLSNPKKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQ 125
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V  +
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAVGRK 264


>gi|159043664|ref|YP_001532458.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12]
 gi|157911424|gb|ABV92857.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12]
          Length = 638

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKDDLEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|15966488|ref|NP_386841.1| metalloprotease transmembrane protein [Sinorhizobium meliloti 1021]
 gi|307300475|ref|ZP_07580255.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C]
 gi|307318340|ref|ZP_07597775.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83]
 gi|15075759|emb|CAC47314.1| Probable metalloprotease transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306896022|gb|EFN26773.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83]
 gi|306904641|gb|EFN35225.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C]
          Length = 645

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 158 DDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|308189107|ref|YP_003933238.1| cell division protein ftsH [Pantoea vagans C9-1]
 gi|308059617|gb|ADO11789.1| cell division protein ftsH [Pantoea vagans C9-1]
          Length = 644

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKDEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|307718943|ref|YP_003874475.1| ClpA-like protein [Spirochaeta thermophila DSM 6192]
 gi|306532668|gb|ADN02202.1| ClpA-like protein [Spirochaeta thermophila DSM 6192]
          Length = 758

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 22/229 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL   + GQ +A  AV  A+    +R +     R +    + L VGPTGVGKT +
Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAI----KRAR-AGFRRPDKPVASFLFVGPTGVGKTEL 506

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +R LA + G P ++ +++++ E            GYVG     ++ D V    + V    
Sbjct: 507 ARSLADIMGVPLLRFDMSEYQEKHTVSRLLGSPPGYVGYEEGALLTDAVRKHPHAVL--L 564

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T NT +    +     ++      E+      +  
Sbjct: 565 LDEI-EKAHPDIFNVLLQVMDYATITDNTGKKADFRNIVLIMTSNAGAREL---GQRMIG 620

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           F         I++  E         R  K+ +  +     + +     L
Sbjct: 621 FGERVMQEESIIHAVEQLFSPEFRNRLDKVIIFKRLAPEIVEQIVRKEL 669


>gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
 gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
          Length = 639

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +        + G  + K  +      L+N  +  +L A +     PK +LL GP G 
Sbjct: 149 TPDDRKRVTFDDVAGIDEVKEELQEIVEFLKNPRKFSELGARI-----PKGVLLYGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT I+R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQAKKN 250


>gi|257792624|ref|YP_003183230.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
 gi|257476521|gb|ACV56841.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243]
          Length = 750

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 1   MKLTFNFSPREIVSELD---RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           M      + + I    D     + G  +A      +   L N  + Q + A +     P+
Sbjct: 197 MSFGKAKTKKSIEERPDVKFSDVAGVDEAVEEMQEIKDFLANPAKYQSMGAKI-----PR 251

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 252 GCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFQQA 305


>gi|308808586|ref|XP_003081603.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116060068|emb|CAL56127.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 749

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +  A L     P  ++LVG  G GKT ++R +A  AG
Sbjct: 262 DVAGVDEAKEELQEIV-DILKRPEKYARLGA-RPPSGVMLVGAPGTGKTLLARAVAGEAG 319

Query: 79  APFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVAINIVRESRRDEVREQA----------- 126
            PFI +  ++F E+  Y    V ++       + +IV     D V +             
Sbjct: 320 VPFISISASEFVELSRYGSARVREVFARAKAQSPSIVFIDEIDAVAKSRGDGKMRGMGND 379

Query: 127 -SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
                  ++L  L G    S        N  +     LR     D+ + ++  D      
Sbjct: 380 EREQTLNQLLTELDGFETESMVICIAATNRADTLDAALRRPGRFDRTVSVDRPDKQGRRE 439

Query: 178 NFDIPGG 184
              +  G
Sbjct: 440 ILAVHTG 446


>gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 604

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            +  PF  +  ++F E+ +VG     V  + R   + A  IV     D + ++
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKK 272


>gi|262370291|ref|ZP_06063617.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           johnsonii SH046]
 gi|262314633|gb|EEY95674.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter
           johnsonii SH046]
          Length = 758

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 28/229 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+  A++              +    + +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAIEALGSAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + V     D
Sbjct: 506 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAIHKNPHCVL--LLD 563

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ E+A  +    +L  +   + T N         R  +  +  + +     +  IS   
Sbjct: 564 EI-EKAHPDVFNLLLQIMDHGSLTDNNG-------RKSDFRNVVLVLTTNIGAESISRVS 615

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I         +  +   K      + ++   +Q  +  L     + ++D
Sbjct: 616 IGFMDQDNSNDNQDAMKKAFSPEFRNRLDSVIQ--FKALPTTVIENVVD 662


>gi|255264093|ref|ZP_05343435.1| cell division protease FtsH [Thalassiobium sp. R2A62]
 gi|255106428|gb|EET49102.1| cell division protease FtsH [Thalassiobium sp. R2A62]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|239946944|ref|ZP_04698697.1| cell division protease FtsH [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921220|gb|EER21244.1| cell division protease FtsH [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFNISGSDFVEM-FVGVGASRVRNMFEQGKRNAPCIIFIDEIDAV 259


>gi|298491599|ref|YP_003721776.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298233517|gb|ADI64653.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 645

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 12/101 (11%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V  LD  + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +
Sbjct: 171 VKFLD--VAGVDEAKAELEEIVDFLKNATKYTNLGAKI-----PKGVLLVGPPGTGKTLL 223

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 AKAIAGEAGVPFFSISGSEFIEL-FVGVGAARV-RDLFEQA 262


>gi|197118688|ref|YP_002139115.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088048|gb|ACH39319.1| cell division ATP-dependent zinc protease lipoprotein FtsH
           [Geobacter bemidjiensis Bem]
          Length = 599

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++  +   L   +     P  +LLVGP G GKT ++R +A
Sbjct: 147 NDVAGAEEAKAELLDTVEFLKDPAKFSALGGKM-----PTGVLLVGPPGTGKTLLARAVA 201

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQASINA 130
             A  PF  +  ++F E+ YVG    ++ RDL       A  IV     D V  +     
Sbjct: 202 GEADVPFFSISGSEFVEM-YVGVGASRV-RDLFAQAKKAAPCIVFIDEIDAVGRKRDAAV 259


>gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a]
 gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease)
           [Frankia alni ACN14a]
          Length = 739

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEAIEELQEIKEFLENPSKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|316932670|ref|YP_004107652.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
 gi|315600384|gb|ADU42919.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 604

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            +  PF  +  ++F E+ +VG     V  + R   + A  IV     D + ++
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKK 272


>gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 609

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK ++   +    N  +  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKESLTEIVDYLHNPQKYTEVGASM-----PKGLLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 EANVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 253


>gi|168034706|ref|XP_001769853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678962|gb|EDQ65415.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 635

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 90/268 (33%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 QDVAGVDEAKQDFMEVVEFLKRPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q      
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 286

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 287 GGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDAALLRPGRFDRQVSVDVPDVK 346

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +         ++S     +   G                       L++   +
Sbjct: 347 GRTDILKVHASNKKFADDVSLDIIAMRTPGFSGAD---------------LANLLNEAAI 391

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 392 LTGRRGKTAISAKEIDDSIDRIVAGMEG 419


>gi|28210271|ref|NP_781215.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88]
 gi|28202707|gb|AAO35152.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88]
          Length = 576

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 34/268 (12%)

Query: 14  SELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +   + I G ++AK +V      L+N  + +   A +     PK I+L G  G GKT ++
Sbjct: 144 AFTFKNIAGNEEAKESVQDVIDFLKNPKKYESYGARM-----PKGIILYGEPGTGKTLLA 198

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR----ESRRDEVREQA 126
           + +A  AG PF  +  + F ++ YVG    +I R L   A N  +        D + ++ 
Sbjct: 199 KAIAGEAGVPFYALSGSDFVQV-YVGVGASRI-RQLFKKARNHKKVVIFIDEIDAIGKKR 256

Query: 127 SI----NAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
           S     N++ER      +L  + G   +         N  ++    L      D+ I++ 
Sbjct: 257 SNSKNGNSDERDQTLNALLTEMSGFNESEGIVVIAATNRLDMLDDALLRPGRFDRHIEVN 316

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D S+      +            + F++        K+   V +      ++ES+ + 
Sbjct: 317 LPDISAREKILSLYCENKPIKNFNIKDFAQKTAYFSGAKLENLVNEAAILACKEESEYIE 376

Query: 229 DMDTVHRDSIQMV--ENYGIVFLDEFDK 254
           ++      SI +   E     F+   DK
Sbjct: 377 NIHFEKAFSIILAGYEKQNRDFIHNTDK 404


>gi|119383442|ref|YP_914498.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans
           PD1222]
 gi|119373209|gb|ABL68802.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans
           PD1222]
          Length = 631

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 242


>gi|332298399|ref|YP_004440321.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
 gi|332181502|gb|AEE17190.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM
           12168]
          Length = 616

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK  ++     L+N  +   + A +     P  ILLVG  G GKT ++R +A 
Sbjct: 169 DVAGQEEAKNELSDVIDFLKNPQKYLDMGAKI-----PTGILLVGNPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            AG  F+ +  + F E+ +VG    ++ RDL + 
Sbjct: 224 EAGVAFLHISGSDFVEM-FVGVGASRV-RDLFEQ 255


>gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
 gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii]
          Length = 595

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 94/275 (34%), Gaps = 45/275 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 133 NDVAGVDEAKQDFMEVVEFLKRPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 187

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 188 GEAGVPFFSISGSEFVEV-FVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 246

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 247 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDAALLRPGRFDRQVSVDVPDVK 306

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +  G      ++S     +   G                       L++   +
Sbjct: 307 GRTEILRVHAGNKKFDGDVSLDVIAMRTPGFSGAD---------------LANLLNEAAI 351

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
                           D  D+IVA   G  +   +
Sbjct: 352 LAGRRGKTAISAKEIDDSIDRIVAGMEGTTMTDGK 386


>gi|292900772|ref|YP_003540141.1| cell division protein [Erwinia amylovora ATCC 49946]
 gi|291200620|emb|CBJ47752.1| cell division protein [Erwinia amylovora ATCC 49946]
          Length = 644

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKDEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|325832734|ref|ZP_08165497.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
 gi|325485873|gb|EGC88334.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1]
          Length = 750

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 1   MKLTFNFSPREIVSELD---RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           M      + + I    D     + G  +A      +   L N  + Q + A +     P+
Sbjct: 197 MSFGKAKTKKSIEERPDVKFSDVAGVDEAVEEMQEIKDFLANPAKYQSMGAKI-----PR 251

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 252 GCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFQQA 305


>gi|304396341|ref|ZP_07378222.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
 gi|304355850|gb|EFM20216.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
          Length = 644

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKDEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|306790883|ref|ZP_07429205.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|306795990|ref|ZP_07434292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|306801237|ref|ZP_07437905.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|306805451|ref|ZP_07442119.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|306969742|ref|ZP_07482403.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
 gi|308369172|ref|ZP_07416832.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308371396|ref|ZP_07424839.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308372684|ref|ZP_07429508.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308328489|gb|EFP17340.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308328904|gb|EFP17755.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308332742|gb|EFP21593.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|308340235|gb|EFP29086.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308343556|gb|EFP32407.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|308348024|gb|EFP36875.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|308351965|gb|EFP40816.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|308352751|gb|EFP41602.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
          Length = 760

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|300718584|ref|YP_003743387.1| cell division protease [Erwinia billingiae Eb661]
 gi|299064420|emb|CAX61540.1| Cell division protease [Erwinia billingiae Eb661]
          Length = 644

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKDEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 751

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 166 DVAGSDEAIEELQEIKEFLENPGKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 221 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 253


>gi|222623348|gb|EEE57480.1| hypothetical protein OsJ_07728 [Oryza sativa Japonica Group]
          Length = 550

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +IV+  D  + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT
Sbjct: 69  DIVTFAD--VAGVDEAKEELEEIVEFLRNPERYIRLGA-----RPPRGVLLVGLPGTGKT 121

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PFI    ++F E+ YVG    ++ RDL   A
Sbjct: 122 LLAKAVAGEAEVPFISCSASEFVEL-YVGMGAARV-RDLFARA 162


>gi|215424853|ref|ZP_03422772.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T92]
          Length = 755

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 306 PEEIHVTFDD-VKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 359

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 360 KTLLARAVAGEASVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 402


>gi|28212045|ref|NP_782989.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28204488|gb|AAO36926.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 624

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 171 KDVAGQEEAKESLMEIVDFLHNSDKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 GEAKVPFFSISGSGFVEM-FVGMGAARV-RDLFEQA 259


>gi|27382257|ref|NP_773786.1| metalloprotease [Bradyrhizobium japonicum USDA 110]
 gi|5531227|emb|CAB51029.1| metalloprotease FtsH [Bradyrhizobium japonicum]
 gi|27355428|dbj|BAC52411.1| metalloprotease [Bradyrhizobium japonicum USDA 110]
          Length = 640

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|330814390|ref|YP_004358629.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487485|gb|AEA81890.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063]
          Length = 629

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   ++  + Q+L   +     PK  LL+GP G GKT I+R +A
Sbjct: 154 KDVAGVDEAKEELVEIVDFLKDPRKFQKLGGKI-----PKGALLIGPPGTGKTLIARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 258


>gi|292486829|ref|YP_003529699.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|291552246|emb|CBA19283.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|312170897|emb|CBX79156.1| cell division protein FtsH [Erwinia amylovora ATCC BAA-2158]
          Length = 647

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKDEVSELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|254474219|ref|ZP_05087610.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudovibrio
           sp. JE062]
 gi|211956749|gb|EEA91958.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudovibrio
           sp. JE062]
          Length = 816

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 474 LKDSLKRVVYGQDPAIEALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 527

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 528 RQLASTLGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVDQHPHC 581


>gi|94263021|ref|ZP_01286840.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
 gi|93456564|gb|EAT06672.1| AAA ATPase, central region:Clp, N terminal [delta proteobacterium
           MLMS-1]
          Length = 760

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ  A  A+A A+    +R +     R +    + L  GPTGVGKT ++R+LA 
Sbjct: 472 LKSGVFGQDQAVEALATAV----KRSR-AGIKRADSPVGSFLFAGPTGVGKTELARQLAM 526

Query: 76  LAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
                F + +++++ E            GYVG +   ++ + +    + 
Sbjct: 527 ALNIHFERFDMSEYMEKHAVSRLIGSPPGYVGFDQGGLLTEAIRKHPHC 575


>gi|315924893|ref|ZP_07921110.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621792|gb|EFV01756.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 678

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  + K  +A  +      +R+R            +PK +LLVGP G GKT ++R 
Sbjct: 154 KDVAGADEEKEELAEIVDFLKAPDRYRSLGA-------RVPKGVLLVGPPGTGKTLLARA 206

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 207 VAGEAGVPFFIISGSDFVEM-FVGVGASRV-RDLFDSA 242


>gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7]
          Length = 604

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 96/268 (35%), Gaps = 53/268 (19%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +   +    N  + +++ A +     PK ILLVGP G GKT +++ +A 
Sbjct: 167 DVAGEDEAKENLTEIVDYLHNPNKYKEIGASM-----PKGILLVGPPGTGKTMLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            +  PF  +  ++F E+ +VG      +RDL   A            +E+A        +
Sbjct: 222 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA------------KEKAPCIVFIDEI 267

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLSE 194
           DA+              KK       + E +  +    +++  F+   G  +    N  E
Sbjct: 268 DAI-------------GKKRDGQIGGNDEREQTLNQLLTEMDGFEGNTGVIILAATNRPE 314

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
                +    +   R+ V+   P+L               R+ I  V    I   D+ D 
Sbjct: 315 SLDPALTRPGRFDRRVPVE--LPDLK-------------GREEILKVHAKKIRLSDDIDF 359

Query: 254 -KIVARDSGNGIGVSREGVQRDLLPLVE 280
            KI    SG         V    L  V 
Sbjct: 360 NKIARMASGASGAELANIVNEAALRAVR 387


>gi|262372531|ref|ZP_06065810.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           junii SH205]
 gi|262312556|gb|EEY93641.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           junii SH205]
          Length = 761

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKAPDKPVGSFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 506 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 558


>gi|118347625|ref|XP_001007289.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|89289056|gb|EAR87044.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 888

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK+ +      L+   + + + A L     PK  LL GP G GKT +++  A
Sbjct: 401 KDVAGQDEAKQEIQEFVDFLKKPAKYKAIGAKL-----PKGALLTGPPGTGKTLLAKACA 455

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 456 GEAGVPFFFISGSDFVEM-FVGVGASRV-RDLFKQA 489


>gi|83592434|ref|YP_426186.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575348|gb|ABC21899.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
          Length = 640

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   LR+  + Q+L   +     PK +LLVGP G GKT ++R +A
Sbjct: 155 DDVAGIDEAKQELEEVVEFLRDPQKFQRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  ++     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +     S     GR+K +++ ++K
Sbjct: 317 DRQVTVSNPDIMGREKILKVHMRK 340


>gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi
           103S]
 gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi
           103S]
          Length = 777

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|292493674|ref|YP_003529113.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291582269|gb|ADE16726.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 639

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 46/269 (17%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 154 DVAGCDEAKEEVKELVDFLRDPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V  Q       
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQ------- 260

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILN 191
           R      G      T      ++   E ++  I I   +    +      PG     ++ 
Sbjct: 261 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDRQVVV 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK-----------------CYPELMRDES-------DRL 227
                       +    ++ V +                     L+ + +        RL
Sbjct: 321 SLPDIRGREQILKVHLRKVPVAENVEPALIARGTPGFSGADLANLVNEAALFAARGNKRL 380

Query: 228 IDMDTV--HRDSIQMVENYGIVFLDEFDK 254
           +DM+ +   +D I M        + E DK
Sbjct: 381 VDMNDLERAKDKILMGVERRSSVMSEEDK 409


>gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
 gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
          Length = 718

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 12/142 (8%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LRN  +   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 244 DVHGATEAKDELQELVDFLRNPDKFSTLGGKL-----PKGILLVGPPGTGKTLLARAVAG 298

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESRRDEVREQASI-NAEER 133
            AG PF  +  ++F E+ YVG   +++ RDL   A          DE+       NA+ R
Sbjct: 299 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFTSAKSKSPAIIFIDELDAIGGKRNAQGR 356

Query: 134 ILDALVGKTATSNTREVFRKKL 155
           +L     + A    R +  +++
Sbjct: 357 LLRQADPQPAADRARRLRTEQV 378


>gi|167648378|ref|YP_001686041.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31]
 gi|167350808|gb|ABZ73543.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31]
          Length = 626

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 16  LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT I+R 
Sbjct: 151 LFDDVAGVDEAKEELQEVVEFLKDPAKFQRLGGKI-----PKGALLVGPPGTGKTLIARA 205

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 VAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 257


>gi|115526687|ref|YP_783598.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisA53]
 gi|115520634|gb|ABJ08618.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|85714371|ref|ZP_01045359.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A]
 gi|85698818|gb|EAQ36687.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A]
          Length = 640

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|91978602|ref|YP_571261.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           BisB5]
 gi|91685058|gb|ABE41360.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|328773498|gb|EGF83535.1| hypothetical protein BATDEDRAFT_22321 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 774

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 37/190 (19%)

Query: 18  RYIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK  V   ++     + +       +     +PK  +L GP G GKT +++ 
Sbjct: 305 KDVAGMDEAKEEVMEFVKFLKDPDHY-------EKLGAKIPKGAVLSGPPGTGKTLLAKA 357

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ 125
            A  AG PF+ V  ++F E+ +VG    ++ RDL   A       I I       + R +
Sbjct: 358 TAGEAGVPFLSVSGSEFIEM-FVGVGSSRV-RDLFASAKKYAPCIIFIDEIDAIGKARSK 415

Query: 126 ASINA--EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEV 169
                  +ER      +L  + G  +T         N  +V    L      D++I I++
Sbjct: 416 GGQMGGNDERESTLNQLLVEMDGFESTEHVVVLAGTNRPDVLDPALLRPGRFDRQISIDL 475

Query: 170 ADTSSDISNF 179
            D    ++ F
Sbjct: 476 PDIKGRVAIF 485


>gi|317488913|ref|ZP_07947443.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
 gi|316911987|gb|EFV33566.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA]
          Length = 725

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 1   MKLTFNFSPREIVSELD---RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           M      + + I    D     + G  +A      +   L N  + Q + A +     P+
Sbjct: 172 MSFGKAKTKKSIEERPDVKFSDVAGVDEAVEEMQEIKDFLANPAKYQSMGAKI-----PR 226

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 227 GCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFQQA 280


>gi|221480843|gb|EEE19267.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii GT1]
          Length = 829

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AKR +   +   + +     D     +P+ +LL GP+G GKT ++R +A  AG
Sbjct: 304 DVAGHEEAKRQLRQII--HFLKTPHAFDALGARVPRGVLLEGPSGTGKTLLARAVAGEAG 361

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+      F E+ +VG+   ++ R L D A
Sbjct: 362 VPFLSFSGGAFVEL-FVGQGASRV-RALFDAA 391


>gi|237844975|ref|XP_002371785.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211969449|gb|EEB04645.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221501549|gb|EEE27322.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii VEG]
          Length = 831

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AKR +   +   + +     D     +P+ +LL GP+G GKT ++R +A  AG
Sbjct: 306 DVAGHEEAKRQLRQII--HFLKTPHAFDALGARVPRGVLLEGPSGTGKTLLARAVAGEAG 363

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+      F E+ +VG+   ++ R L D A
Sbjct: 364 VPFLSFSGGAFVEL-FVGQGASRV-RALFDAA 393


>gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 615

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   R +   L++R    +L   +     PK +LLVGP G GKT +++ +A
Sbjct: 159 DDVAGVDEAKDELREIVSFLKDRKSYGRLGGRM-----PKGVLLVGPPGTGKTLLAKAVA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 GEAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 247


>gi|186475644|ref|YP_001857114.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192103|gb|ACC70068.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 629

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|325524577|gb|EGD02604.1| FtsH endopeptidase [Burkholderia sp. TJI49]
          Length = 471

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 27/183 (14%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G ++AK   + +   L+N  +   L   L     PK +LLVGP G G
Sbjct: 250 PEEINVTFDD-VKGVEEAKQELKEIVEFLKNPEKFSTLGGKL-----PKGVLLVGPPGTG 303

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  AG P+      +F E  +G   R V  + +     A  ++     D V 
Sbjct: 304 KTLLARAVAGEAGVPYFHAAGPEFDEILVGQGARRVRDLFKAAKMRAPCVIFIDEIDSVG 363

Query: 124 EQASINA--------EERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI 167
            + S +           ++L  + G             N R+   K L      D E+ +
Sbjct: 364 AKRSSSVLHPYANQTINQLLAEMDGFHQNEGVIVLGATNRRDDLDKALLRPGRFDVEVQV 423

Query: 168 EVA 170
            V 
Sbjct: 424 PVP 426


>gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 628

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIEEAKEELQEVVTFLKQPEKFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|260202801|ref|ZP_05770292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289572264|ref|ZP_06452491.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289536695|gb|EFD41273.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
          Length = 760

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|209524573|ref|ZP_03273121.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209495031|gb|EDZ95338.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 621

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G ++AK  +A     L+N  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 165 NDIAGVEEAKAELAEVVDFLKNPQRFIEIGARI-----PKGLLLVGPPGTGKTLMAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 220 GEAGVPFFSISASEFVEL-FVGTGAARV-RDLFEQA 253


>gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
          Length = 614

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P +I     + + G  +A   +      L+N  +  ++ A +     PK ILLVGP G G
Sbjct: 152 PNKIKVTF-KDVAGVDEAVEELKETVEFLKNPGKFTKIGARM-----PKGILLVGPPGTG 205

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 206 KTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAARV-RDLFEQA 248


>gi|86748941|ref|YP_485437.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           HaA2]
 gi|86571969|gb|ABD06526.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|148259383|ref|YP_001233510.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326402604|ref|YP_004282685.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146401064|gb|ABQ29591.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325049465|dbj|BAJ79803.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 641

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK   + +   LR+  + Q+L   +     PK +LLVGP G GKT ++R +A
Sbjct: 157 EDVAGIEEAKGELQEIVDFLRDPQKFQRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 261


>gi|83950084|ref|ZP_00958817.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM]
 gi|83837983|gb|EAP77279.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM]
          Length = 639

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGQI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|15610746|ref|NP_218127.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           tuberculosis H37Rv]
 gi|31794786|ref|NP_857279.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           bovis AF2122/97]
 gi|121639529|ref|YP_979753.1| membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663474|ref|YP_001284997.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148824816|ref|YP_001289569.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|215405659|ref|ZP_03417840.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 02_1987]
 gi|215413533|ref|ZP_03422205.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215432584|ref|ZP_03430503.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis EAS054]
 gi|215447950|ref|ZP_03434702.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T85]
 gi|218755392|ref|ZP_03534188.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis GM 1503]
 gi|219559685|ref|ZP_03538761.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T17]
 gi|224992026|ref|YP_002646715.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800650|ref|YP_003033651.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233111|ref|ZP_04926437.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|254366165|ref|ZP_04982209.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552724|ref|ZP_05143171.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260184530|ref|ZP_05762004.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|260198654|ref|ZP_05766145.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289441041|ref|ZP_06430785.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289445204|ref|ZP_06434948.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555872|ref|ZP_06445082.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289571849|ref|ZP_06452076.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289747446|ref|ZP_06506824.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289748124|ref|ZP_06507502.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289755737|ref|ZP_06515115.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289759770|ref|ZP_06519148.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|289763788|ref|ZP_06523166.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294993728|ref|ZP_06799419.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis 210]
 gi|297636285|ref|ZP_06954065.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
 gi|297733279|ref|ZP_06962397.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN R506]
 gi|298527088|ref|ZP_07014497.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306974083|ref|ZP_07486744.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|307081791|ref|ZP_07490961.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|307086407|ref|ZP_07495520.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|313660609|ref|ZP_07817489.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN V2475]
 gi|61224305|sp|P0A4V9|FTSH_MYCBO RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158513773|sp|A5U8T5|FTSH_MYCTA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158517768|sp|P0C5C0|FTSH_MYCTU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2113966|emb|CAB08956.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|31620383|emb|CAD95826.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121495177|emb|CAL73663.1| Membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124602904|gb|EAY61179.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|134151677|gb|EBA43722.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507626|gb|ABQ75435.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148723343|gb|ABR07968.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|224775141|dbj|BAH27947.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322153|gb|ACT26756.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|289413960|gb|EFD11200.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289418162|gb|EFD15363.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440504|gb|EFD22997.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289545603|gb|EFD49251.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289687974|gb|EFD55462.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289688711|gb|EFD56140.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289696324|gb|EFD63753.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289711294|gb|EFD75310.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289715334|gb|EFD79346.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|298496882|gb|EFI32176.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308356600|gb|EFP45451.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|308360557|gb|EFP49408.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|308364173|gb|EFP53024.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|326905448|gb|EGE52381.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis W-148]
 gi|328460381|gb|AEB05804.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
          Length = 760

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis]
 gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis]
          Length = 744

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 300 PEEINVTFDD-VKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 353

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 354 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 396


>gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta]
          Length = 723

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNIL 57
           M       P +I       + G  +AK+ +      L+N  +   L   L     PK +L
Sbjct: 271 MSHRIEIDPEDIHVTF-SDVKGVDEAKQELLNVVEFLKNPDKFSALGGKL-----PKGVL 324

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVR 115
           LVGP G GKT ++R +A  AG PF  V   +F E  +G   R V  + R   + A  +V 
Sbjct: 325 LVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVF 384

Query: 116 ESRRDEVREQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDK 163
               D V  + + +     A + I   L           V        RK L    +   
Sbjct: 385 IDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFRQNEGVIVLGATNRRKDLDKALMRPG 444

Query: 164 EIDIEVADTSSD 175
             D+E+     D
Sbjct: 445 RFDVEIYVNKPD 456


>gi|260582442|ref|ZP_05850233.1| cell division protein [Haemophilus influenzae NT127]
 gi|260094422|gb|EEW78319.1| cell division protein [Haemophilus influenzae NT127]
          Length = 456

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 245


>gi|242091595|ref|XP_002441630.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
 gi|241946915|gb|EES20060.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor]
          Length = 771

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 264 DVKGVDEVKAELEEIV--HYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 321

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF     ++F E+ +VG    ++ RDL + A   
Sbjct: 322 VPFFSCSGSEFEEM-FVGVGARRV-RDLFNAAKKR 354


>gi|158423219|ref|YP_001524511.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
 gi|158330108|dbj|BAF87593.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 817

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L R + GQ  A  A+A +++              E    + L  GPTGVGKT +++
Sbjct: 460 LETTLKRVVYGQDKAIEALASSIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 QLASTLGVNLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQTPHC 567


>gi|75676894|ref|YP_319315.1| peptidase M41, FtsH [Nitrobacter winogradskyi Nb-255]
 gi|74421764|gb|ABA05963.1| membrane protease FtsH catalytic subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 640

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|15843222|ref|NP_338259.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|13883577|gb|AAK48073.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|323717718|gb|EGB26918.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CDC1551A]
          Length = 760

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|262367194|gb|ACY63751.1| cell division protein [Yersinia pestis D182038]
          Length = 355

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|262376115|ref|ZP_06069345.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           lwoffii SH145]
 gi|262308716|gb|EEY89849.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           lwoffii SH145]
          Length = 758

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 80/207 (38%), Gaps = 26/207 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAIEALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA+  G   ++ +++++ E            GYVG +   ++ D +    + V     D
Sbjct: 506 QLAKQMGVELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAIHKNPHCVL--LLD 563

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ E+A  +    +L  +   + T N         R  +  +  + +     +  IS   
Sbjct: 564 EI-EKAHPDVFNLLLQIMDHGSLTDNNG-------RKSDFRNVVLVLTTNIGAESISRAS 615

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKK 207
           I         +  E   K      + +
Sbjct: 616 IGFMEQDNSNDNQEAMKKAFSPEFRNR 642


>gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
 gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
          Length = 745

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 301 PEEINVTFDD-VKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-----PKGVLLVGPPGTG 354

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 355 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 397


>gi|91784537|ref|YP_559743.1| FtsH peptidase [Burkholderia xenovorans LB400]
 gi|296158195|ref|ZP_06841027.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|91688491|gb|ABE31691.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans
           LB400]
 gi|295891531|gb|EFG71317.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 629

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|257062950|ref|YP_003142622.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|310946762|sp|C7N1I1|FTSH_SLAHD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256790603|gb|ACV21273.1| membrane protease FtsH catalytic subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 783

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 107/285 (37%), Gaps = 32/285 (11%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +A   +      L N  + Q+L A +     P+  LLVGP G GKT ++R +A 
Sbjct: 286 DVAGEDEAVEELQEIKDFLVNPGKYQKLGAKI-----PRGCLLVGPPGTGKTLLARAVAG 340

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            A  PF  +  ++F E+ +VG     V  +     + A +I+     D V  Q       
Sbjct: 341 EANVPFFSISGSEFVEM-FVGVGASRVRNLFEQAKEAAPSIIFIDEIDAVGRQRG----- 394

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                  G     + RE    +L       ++ D  V   +++  +   P     G  + 
Sbjct: 395 ------TGLGGGHDEREQTLNQLLVEMDGFEKNDAVVLIAATNRVDVLDPALLRPGRFDR 448

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
             +       GR K   + V      +  D     +D++ + + +  M     +  ++E 
Sbjct: 449 QIVVDGPDVKGRVK--ILEVHAKNKPIGED-----VDLERIAKLTSGMTGADLMNLMNEA 501

Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
             + AR + + IG+    V   +  L+ G    T+  +  T   +
Sbjct: 502 ALLTARRNKDKIGMDE--VNESMERLMAGPERKTRVLNEKTRRTI 544


>gi|145641634|ref|ZP_01797211.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145273681|gb|EDK13550.1| RNA polymerase sigma factor [Haemophilus influenzae 22.4-21]
          Length = 416

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 245


>gi|86607354|ref|YP_476117.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
 gi|86555896|gb|ABD00854.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK  +A     L+N  R   L A +     P+ +LLVGP G GKT ++R +A
Sbjct: 169 NDVAGVDQAKLELAEVVDFLKNPERYNALGARI-----PRGVLLVGPPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 257


>gi|24987642|pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
          Length = 257

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 2   LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 58

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 59  TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 116


>gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
 gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
          Length = 743

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGAEEAVEELYEIKDFLQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|253991508|ref|YP_003042864.1| ATP-dependent metalloprotease [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638386|emb|CAR67008.1| atp-binding protein (ec 3.4.24.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782958|emb|CAQ86123.1| ATP-binding protein [Photorhabdus asymbiotica]
          Length = 653

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPGRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|291458866|ref|ZP_06598256.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418120|gb|EFE91839.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 689

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++   +    N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 190 KDVAGEDEAKESLVEIVDFLHNPEKYVDIGAKL-----PKGALLVGPPGTGKTLLAKAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  + R     A  IV     D +
Sbjct: 245 GEAQVPFYSLSGSDFVEM-FVGVGASRVRDLFRQAAQNAPCIVFIDEIDAI 294


>gi|198276295|ref|ZP_03208826.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
 gi|198270737|gb|EDY95007.1| hypothetical protein BACPLE_02489 [Bacteroides plebeius DSM 17135]
          Length = 676

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 25/237 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ  AK+ V   + +  ++ Q   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 187 KDVAGQAAAKQEVQEIV-DFLKQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 244

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  + F E+ +VG     V  + R   + +  I+     D V R +        
Sbjct: 245 DVPFFSISGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARGKNPSMGG 303

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                N   ++L  + G  + S        N  ++  K L      D++I +++ D +  
Sbjct: 304 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDILDKALLRAGRFDRQIYVDLPDLNER 363

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              F +         N+          G       +V      +      + +D D 
Sbjct: 364 KEVFGVHLKPLKLDSNVDVDLLARQTPGFSGADIANVCNEAALIAARHQKKSVDKDD 420


>gi|39934201|ref|NP_946477.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           CGA009]
 gi|192289727|ref|YP_001990332.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           TIE-1]
 gi|39648049|emb|CAE26569.1| metalloprotease (cell division protein) FtsH [Rhodopseudomonas
           palustris CGA009]
 gi|192283476|gb|ACE99856.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           TIE-1]
          Length = 638

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|260436446|ref|ZP_05790416.1| cell division protease FtsH [Synechococcus sp. WH 8109]
 gi|260414320|gb|EEX07616.1| cell division protease FtsH [Synechococcus sp. WH 8109]
          Length = 624

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ +   + +  +R +  A++   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKQELTEIV-DFLKRPERYAEIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 258


>gi|302530789|ref|ZP_07283131.1| cell division protein [Streptomyces sp. AA4]
 gi|302439684|gb|EFL11500.1| cell division protein [Streptomyces sp. AA4]
          Length = 667

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 41  DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 95

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 96  EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 128


>gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 628

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIDEAKEELQEVVTFLKQPEKFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|78212463|ref|YP_381242.1| FtsH-2 peptidase [Synechococcus sp. CC9605]
 gi|78196922|gb|ABB34687.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 624

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ +   + +  +R +  A++   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKQELTEIV-DFLKRPERYAEIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 258


>gi|197334360|ref|YP_002155235.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11]
 gi|197315850|gb|ACH65297.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11]
          Length = 657

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +  D  + G  +AK   + +   LR   R Q+L   +     P  +LLVGP G
Sbjct: 143 MTEEQIKTTFDD-VAGCDEAKEDVKELVDYLREPSRFQKLGGKI-----PTGVLLVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT I++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLIAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|229825793|ref|ZP_04451862.1| hypothetical protein GCWU000182_01156 [Abiotrophia defectiva ATCC
           49176]
 gi|229790356|gb|EEP26470.1| hypothetical protein GCWU000182_01156 [Abiotrophia defectiva ATCC
           49176]
          Length = 672

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK   R +   L N  +  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 187 DVAGEDEAKDSLREMVDFLHNPRKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 241

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 242 EAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 274


>gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 628

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIDEAKEELQEVVTFLKQPEKFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|113460868|ref|YP_718935.1| FtsH peptidase [Haemophilus somnus 129PT]
 gi|112822911|gb|ABI25000.1| membrane protease FtsH catalytic subunit [Haemophilus somnus 129PT]
          Length = 612

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 21/221 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 146 LTKEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPSKFQKLGGKI-----PKGILMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 200 TGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEID 258

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNF 179
            V  Q       R      G      T      ++   E ++  I I   +    +    
Sbjct: 259 AVGRQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPAL 311

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             PG     ++             +    ++ V      + 
Sbjct: 312 TRPGRFDRQVVVGLPDVRGREHILKVHMRKVPVADDVDAMT 352


>gi|170717398|ref|YP_001784502.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336]
 gi|168825527|gb|ACA30898.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336]
          Length = 609

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 21/221 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 143 LTKEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPSKFQKLGGKI-----PKGILMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 197 TGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEID 255

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNF 179
            V  Q       R      G      T      ++   E ++  I I   +    +    
Sbjct: 256 AVGRQ-------RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPAL 308

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220
             PG     ++             +    ++ V      + 
Sbjct: 309 TRPGRFDRQVVVGLPDVRGREHILKVHMRKVPVADDVDAMT 349


>gi|254822681|ref|ZP_05227682.1| ATP-dependent metallopeptidase HflB [Mycobacterium intracellulare
           ATCC 13950]
          Length = 811

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 165 DVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|145545642|ref|XP_001458505.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426325|emb|CAK91108.1| unnamed protein product [Paramecium tetraurelia]
          Length = 864

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 35/191 (18%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+   + +++ A L     P+  LL GP G GKT +++  A
Sbjct: 406 KDVAGLDEAKLEIKEFVDFLKKPRKYKEMGAKL-----PRGALLAGPPGTGKTMVAKACA 460

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRR 119
             AG PF  V  + F E+ +VG    ++ RDL                  A+   R+++ 
Sbjct: 461 GEAGVPFFFVSGSDFVEM-FVGVGASRV-RDLFKQAKAKSPSIIFIDEIDAVGRKRDAKI 518

Query: 120 DEVREQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
               E+   N   ++L  + G          A +N +E+    L      D+ +DI + D
Sbjct: 519 GGNDER--DNTLNQLLVEMDGFGTDTNVIVLAATNRKELLDPALTRPGRFDRSVDITLPD 576

Query: 172 TSSDISNFDIP 182
                  F + 
Sbjct: 577 IEGRKQIFMVH 587


>gi|59711086|ref|YP_203862.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114]
 gi|59479187|gb|AAW84974.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114]
          Length = 657

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +  D  + G  +AK   + +   LR   R Q+L   +     P  +LLVGP G
Sbjct: 143 MTEEQIKTTFDD-VAGCDEAKEDVKELVDYLREPSRFQKLGGKI-----PTGVLLVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT I++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLIAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|183985081|ref|YP_001853372.1| membrane-bound protease FtsH [Mycobacterium marinum M]
 gi|183178407|gb|ACC43517.1| membrane-bound protease FtsH [Mycobacterium marinum M]
          Length = 746

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|118619366|ref|YP_907698.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99]
 gi|118571476|gb|ABL06227.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99]
          Length = 740

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|21954076|gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana]
          Length = 501

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 36  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 93

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q         
Sbjct: 94  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 152

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 153 DEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRT 212

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G       +S                  +    P     +   L++   +   
Sbjct: 213 DILKVHSGNKKFESGVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 257

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 258 RRGKTAISSKEIDDSIDRIVAGMEG 282


>gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense]
          Length = 702

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 240 DDVAGVDEAKQDFMEVVEFLKKPERFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 294

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++     
Sbjct: 295 GEAGVPFFSISGSEFVEM-FVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 353

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 354 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVR 413

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  +         ++S                  V    P     +   L++   +
Sbjct: 414 GRTEILKVHANNKKFDSDVS---------------LEIVAMRTPGFSGADLANLLNEAAI 458

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
                           D  D+IVA   G
Sbjct: 459 LAGRRGKSGISSKEIDDSIDRIVAGMEG 486


>gi|330816268|ref|YP_004359973.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
 gi|327368661|gb|AEA60017.1| FtsH endopeptidase [Burkholderia gladioli BSR3]
          Length = 629

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|110597796|ref|ZP_01386079.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340521|gb|EAT59004.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 661

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
            +F+ S  ++VSE D     + + G  +A   +      L N  + Q++   +     PK
Sbjct: 190 FSFSKSRAKLVSEFDVKTTFKDVAGVDEAVEELQETVEFLTNPEKFQKIGGKI-----PK 244

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 245 GVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFEQAKKN 301


>gi|327295456|ref|XP_003232423.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
 gi|326465595|gb|EGD91048.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892]
          Length = 806

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 343 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 397

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 398 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFAQARAKAPAIIFIDELDAIGAKRNERDA 455

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++D+ + D    +
Sbjct: 456 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGRV 515

Query: 177 SNFD 180
              +
Sbjct: 516 DILN 519


>gi|299134182|ref|ZP_07027375.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2]
 gi|298590929|gb|EFI51131.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2]
          Length = 638

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
 gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
          Length = 777

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|220904697|ref|YP_002480009.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868996|gb|ACL49331.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 832

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 21/148 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   + GQ  A      A+       +  A L  E  P    L  GPTGVGKT ++
Sbjct: 465 LEKDLKELVFGQDAAIELTVRAI------LRARAGLGQEQRPAGAFLFYGPTGVGKTEVA 518

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           R LA+L G  F++ +++++ E            GYVG +   ++ + V  A   V     
Sbjct: 519 RSLAKLMGVEFLRYDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTEAVRKAPYSV--VLL 576

Query: 120 DEVREQASINAEERILDALVGKTATSNT 147
           DEV E+A  +    +L  +   T T NT
Sbjct: 577 DEV-EKAHPDIFNVLLQVMDYATLTDNT 603


>gi|163733525|ref|ZP_02140968.1| cell division protein FtsH [Roseobacter litoralis Och 149]
 gi|161393313|gb|EDQ17639.1| cell division protein FtsH [Roseobacter litoralis Och 149]
          Length = 624

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 139 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 193

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 194 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 243


>gi|300863957|ref|ZP_07108871.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300338031|emb|CBN54017.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 640

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + G ++AK  +   +    + ++  A      +PK +LL+GP G GKT +++ +A 
Sbjct: 179 LFDDVAGIEEAKEELQEVVTFLKKPERFTAIGA--KIPKGVLLIGPPGTGKTLLAKAIAG 236

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 237 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKEHAPCIVFIDEIDAV 285


>gi|195442398|ref|XP_002068945.1| GK18042 [Drosophila willistoni]
 gi|194165030|gb|EDW79931.1| GK18042 [Drosophila willistoni]
          Length = 819

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 321 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 378

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 379 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGH 437

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 438 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRA 497

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  G+    L+ ++L  K+
Sbjct: 498 SIFKVHLGSLKTELDKNDLSRKM 520


>gi|187924838|ref|YP_001896480.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
 gi|187716032|gb|ACD17256.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN]
          Length = 629

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|315179214|gb|ADT86128.1| cell division protein FtsH [Vibrio furnissii NCTC 11218]
          Length = 418

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 145 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 199

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 200 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 248


>gi|323456556|gb|EGB12423.1| hypothetical protein AURANDRAFT_52218 [Aureococcus anophagefferens]
          Length = 798

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLA 74
            ++G  +AK+ +   +        L    R       +PK  LL+GP G GKT ++R +A
Sbjct: 270 DVMGVDEAKQELEEIV------MFLSDPTRFTRLGGKLPKGCLLMGPPGTGKTLLARAIA 323

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF     ++F E+ YVG    ++ RDL + A   
Sbjct: 324 GEAGVPFFYASGSEFEEM-YVGVGARRV-RDLFEAAKKR 360


>gi|293390042|ref|ZP_06634376.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950576|gb|EFE00695.1| ATP-dependent metallopeptidase HflB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 650

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   + Q L   +     PK IL+VGP G
Sbjct: 143 MTQEQIKTTF-ADVAGCDEAKEEVGEIVDFLREPKKFQNLGGKI-----PKGILMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  ++     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEKAKKNAPCLIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|126664882|ref|ZP_01735866.1| ATP-dependent Zn protease [Marinobacter sp. ELB17]
 gi|126631208|gb|EBA01822.1| ATP-dependent Zn protease [Marinobacter sp. ELB17]
          Length = 651

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P+ +L++GP G GKT +++ +A 
Sbjct: 155 DVAGVDEAKEDVKELVDFLRDPSRFQRLGGRI-----PRGVLMIGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 245


>gi|330839242|ref|YP_004413822.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
 gi|329747006|gb|AEC00363.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC
           35185]
          Length = 663

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L++  +   L A +     PK +LL GP G GKT ++R +A
Sbjct: 157 EDVAGADEAKQELEEVVEFLKHPKKFNDLGARI-----PKGVLLYGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 212 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQAKKN 248


>gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 616

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum]
          Length = 693

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 288

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V R++        
Sbjct: 289 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 347

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 348 DEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRT 407

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               +  G      ++S     +   G               L+ + +   I      + 
Sbjct: 408 EILKVHAGNKKFDSDVSLEVIAMRTPGFS-------GADLANLLSEAA---ILAGRRGKT 457

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
           +I   E       D  D+IVA   G
Sbjct: 458 AIASKEID-----DSIDRIVAGMEG 477


>gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787792|emb|CAE16907.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 653

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPGRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|116747494|ref|YP_844181.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
 gi|116696558|gb|ABK15746.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Syntrophobacter fumaroxidans MPOB]
          Length = 776

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 16/121 (13%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           +       +  EL   + GQ  A   +  A+    +R +    +  E    + L +GPTG
Sbjct: 450 SDQLRLHSLDEELKGQVFGQDGAIDVLVKAI----KRSRAGLRIP-ERPIGSFLFIGPTG 504

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           VGKT ++++LAR+ G  F++ +++++ E            GY+G +   ++ D +     
Sbjct: 505 VGKTEVAKQLARILGVNFLRFDMSEYMEKHTVARLIGAPPGYIGFDQGGLLTDAIRKQPY 564

Query: 113 I 113
            
Sbjct: 565 T 565


>gi|326475725|gb|EGD99734.1| intermembrane space AAA protease [Trichophyton tonsurans CBS
           112818]
          Length = 802

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 339 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 393

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 394 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFAQARAKAPAIIFIDELDAIGAKRNERDA 451

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++D+ + D    +
Sbjct: 452 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGRV 511

Query: 177 SNFD 180
              +
Sbjct: 512 DILN 515


>gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
 gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
          Length = 619

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+ +AK  +   +   +             MPK ILLVGP G GKT +++ +A  + 
Sbjct: 171 DVAGEDEAKENLQEIVN--YLHDPNQFKSIGATMPKGILLVGPPGTGKTMLAKAVAGESN 228

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  ++F E+ +VG     V  + +D  + A  IV     D +
Sbjct: 229 VPFFSISGSEFVEM-FVGMGASKVRSLFKDAKEKAPCIVFIDEIDAI 274


>gi|300721531|ref|YP_003710806.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
 gi|297628023|emb|CBJ88572.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
          Length = 637

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK IL+VGP G GK
Sbjct: 146 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPGRFQKLGGKIPKGILMVGPPGTGK 202

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 203 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 260


>gi|159027910|emb|CAO89717.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 600

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   +   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 146 NDVAGVDEAKEDLEEVVTFLKQPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAIA 200

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + R   + A  +V     D V
Sbjct: 201 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAQENAPCLVFIDEIDAV 250


>gi|186470797|ref|YP_001862115.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|310943122|sp|B2JVU2|FTSH_BURP8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|184197106|gb|ACC75069.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 645

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 31/183 (16%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++I       + G  +AK   + V   LR+     +L A      +PK +LLVGP G GK
Sbjct: 152 KDIKVTF-ADVAGVDEAKDELKEVVSFLRDPRSYGRLGA-----RVPKGVLLVGPPGTGK 205

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A  AG  F  +  ++F E+ +VG    ++ RDL + A               A
Sbjct: 206 TLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAARV-RDLFEQARKHAP----------A 253

Query: 127 SINAEERILDAL--------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            +  +E  LD+L         G        +   + L + +  D  I + +   ++    
Sbjct: 254 IVFIDE--LDSLGRARGSAFPGGGGHDEKEQTLNQLLAELDGFDTSIGVVLLAATNRPEI 311

Query: 179 FDI 181
            D 
Sbjct: 312 LDP 314


>gi|16330069|ref|NP_440797.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492512|sp|P73437|FTSH4_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|1652556|dbj|BAA17477.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 628

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  ++  + +  +  Q    L  ++ PK +LLVGP G GKT +++  A  A
Sbjct: 174 DDVAGVEEAKTELSEVV-DFLKFPQRYTALGAKI-PKGVLLVGPPGTGKTLLAKAAAGEA 231

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 232 GVPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKQ 265


>gi|224104403|ref|XP_002313426.1| predicted protein [Populus trichocarpa]
 gi|222849834|gb|EEE87381.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + +  +  +   +L  ++ PK  LLVGP G GKT +++  A  +
Sbjct: 301 KDVAGCDEAKQEIMEFV-HFLKSPKKYEELGAKI-PKGALLVGPPGTGKTLLAKATAGES 358

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 359 GVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 405


>gi|209886398|ref|YP_002290255.1| putative Cell division protease FtsH -like protein [Oligotropha
           carboxidovorans OM5]
 gi|209874594|gb|ACI94390.1| putative Cell division protease FtsH -like protein [Oligotropha
           carboxidovorans OM5]
          Length = 638

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|167587472|ref|ZP_02379860.1| ATP-dependent metalloprotease FtsH [Burkholderia ubonensis Bu]
          Length = 631

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|168001910|ref|XP_001753657.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695064|gb|EDQ81409.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 647

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R ++ 
Sbjct: 194 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVSG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 249 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 281


>gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046]
          Length = 679

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K+ +      L++  +   + A +     PK ILLVGP G GKT ++R +A
Sbjct: 169 NDVAGADEEKQELVEVVDFLKDHRKFTDIGARI-----PKGILLVGPPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 224 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 260


>gi|114672125|ref|XP_001171710.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 1 [Pan
           troglodytes]
          Length = 730

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 352

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 353 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 411

Query: 122 VREQ 125
           V  +
Sbjct: 412 VGRK 415


>gi|114672123|ref|XP_001171770.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 2 [Pan
           troglodytes]
          Length = 772

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 270 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 327

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 328 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 386

Query: 122 VREQ 125
           V  +
Sbjct: 387 VGRK 390


>gi|109121512|ref|XP_001094146.1| PREDICTED: AFG3 ATPase family gene 3-like 2 isoform 2 [Macaca
           mulatta]
          Length = 798

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 353

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 354 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 412

Query: 122 VREQ 125
           V  +
Sbjct: 413 VGRK 416


>gi|77918833|ref|YP_356648.1| cell division protein [Pelobacter carbinolicus DSM 2380]
 gi|123743049|sp|Q3A579|FTSH_PELCD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|77544916|gb|ABA88478.1| cell division protein [Pelobacter carbinolicus DSM 2380]
          Length = 646

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +      LRN  +  +L A       P+ +LLVGP G GKT ++R +A 
Sbjct: 177 DVAGLDEAKQELMEIIEFLRNPKKFMRLGAK-----APRGVLLVGPPGTGKTLMARAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 232 EAEVPFFTISASQFIEM-FVGVGASRV-RDLFNNAKKN 267


>gi|74212425|dbj|BAE30959.1| unnamed protein product [Mus musculus]
 gi|74220457|dbj|BAE31449.1| unnamed protein product [Mus musculus]
          Length = 802

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|52075839|dbj|BAD45447.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 472

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 90/265 (33%), Gaps = 39/265 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 10  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 67

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V  Q         
Sbjct: 68  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 126

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  + G          A +N  ++    L      D+++ ++V D     
Sbjct: 127 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRT 186

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
               + G       ++S                  +    P     +   L++   +   
Sbjct: 187 EILKVHGSNKKFDTDVS---------------LEVIAMRTPGFSGADLANLLNEAAILAG 231

Query: 237 SIQMVENYGIVFLDEFDKIVARDSG 261
                        D  D+IVA   G
Sbjct: 232 RRGRTAISSKEIDDSIDRIVAGMEG 256


>gi|5457357|emb|CAB48398.1| paraplegin-like protein [Homo sapiens]
          Length = 797

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 352

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 353 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 411

Query: 122 VREQ 125
           V  +
Sbjct: 412 VGRK 415


>gi|209964987|ref|YP_002297902.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           centenum SW]
 gi|209958453|gb|ACI99089.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum
           centenum SW]
          Length = 765

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A   +  A++              E    N L  GPTGVGKT +
Sbjct: 454 QNLERDLKTMVFGQDQAIDTLVSAIK-----LARAGLRDAEKPIGNYLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LAR  G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 AKQLARTLGIELTRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVDQHPHC 563


>gi|157119195|ref|XP_001653295.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108875430|gb|EAT39655.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 771

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 280 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 337

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 338 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKSFGGH 396

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 397 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALLRPGRFDRQIFVPAPDIKGRA 456

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  G     LN ++L  K+
Sbjct: 457 SIFKVHLGPLKTDLNKTDLARKM 479


>gi|307718729|ref|YP_003874261.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192]
 gi|306532454|gb|ADN01988.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192]
          Length = 619

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
              +   + GQ++AK   + V   L+N  +  ++ A +     PK +LLVG  G GKT +
Sbjct: 164 KKVMFADVAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLL 218

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +R +A  AG PF  +  + F E+ +VG    ++ RDL D     
Sbjct: 219 ARAVAGEAGVPFFHMSGSDFVEM-FVGVGAARV-RDLFDQGRKH 260


>gi|90022365|ref|YP_528192.1| membrane protease FtsH catalytic subunit [Saccharophagus degradans
           2-40]
 gi|89951965|gb|ABD81980.1| membrane protease FtsH catalytic subunit [Saccharophagus degradans
           2-40]
          Length = 641

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R           +P+ +L+ GP G GKT +++ +A  A 
Sbjct: 158 DVAGVDEAKEEVSELVE--YLRDPSKFQRLGGRIPRGVLMSGPPGTGKTLLAKAIAGEAK 215

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 216 VPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|222148870|ref|YP_002549827.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
 gi|221735856|gb|ACM36819.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 830

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ DA  A++ A++         A LR+   P  + +  GPTGVGKT ++
Sbjct: 469 LDKELRSVVYGQDDAIEALSTAIK------LARAGLREPNKPIGSYVFSGPTGVGKTEVA 522

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 523 KQLAASLGVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 576


>gi|74211696|dbj|BAE29204.1| unnamed protein product [Mus musculus]
          Length = 795

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|315185669|gb|EFU19437.1| membrane protease FtsH catalytic subunit [Spirochaeta thermophila
           DSM 6578]
          Length = 619

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 109/281 (38%), Gaps = 35/281 (12%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
              +   + GQ++AK   + V   L+N  +  ++ A +     PK +LLVG  G GKT +
Sbjct: 164 KKVMFADVAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLL 218

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQ 125
           +R +A  AG PF  +  + F E+ +VG    ++ RDL D     A  I+     D V   
Sbjct: 219 ARAVAGEAGVPFFHMSGSDFVEM-FVGVGAARV-RDLFDQGRKHAPCIIFIDELDAVG-- 274

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD---ISNFDIP 182
                  R+  A  G       + + +  +       KE  I +A T+           P
Sbjct: 275 -------RVRGAGYGGGHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRP 327

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---PELMRDESDRLIDMDTVHRDSIQ 239
           G     ++       +     R    ++ + +                 D++ +  ++  
Sbjct: 328 GRFDRQVVVDMPDVKEREAILRIHARKVPLGEDVDFERIARGTAGTSGADLENLVNEAAL 387

Query: 240 MV--ENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRD 274
           +   +N G+V +++F    DKI+   +     +SRE  ++ 
Sbjct: 388 LAARKNKGVVEMEDFEEARDKILMGVARKSRVLSREEKEKT 428


>gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 825

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +   L A L     PK +LLVGP G GKT ++R +A 
Sbjct: 344 DVHGCDEAKEELQEVVEFLKNPEKFSDLGAKL-----PKGVLLVGPPGTGKTLLARAVAG 398

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F EI +VG   +++ R+L   A          + +  A +  +E  L
Sbjct: 399 EAGVPFFYMSGSEFDEI-FVGVGAKRV-RELFTAA----------KSKSPAIVFIDE--L 444

Query: 136 DALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           DA+ G       ++ ++   + L + +  D++  I +   ++  +  D
Sbjct: 445 DAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIIGATNLPTMLD 492


>gi|238026784|ref|YP_002911015.1| FtsH endopeptidase [Burkholderia glumae BGR1]
 gi|237875978|gb|ACR28311.1| FtsH endopeptidase [Burkholderia glumae BGR1]
          Length = 629

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|161525193|ref|YP_001580205.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189350068|ref|YP_001945696.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221201969|ref|ZP_03575005.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
 gi|221204901|ref|ZP_03577918.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221213878|ref|ZP_03586851.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|160342622|gb|ABX15708.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189334090|dbj|BAG43160.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|221166055|gb|EED98528.1| cell division protease FtsH [Burkholderia multivorans CGD1]
 gi|221175758|gb|EEE08188.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia
           multivorans CGD2]
 gi|221178052|gb|EEE10463.1| cell division protease FtsH [Burkholderia multivorans CGD2M]
          Length = 631

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|322831209|ref|YP_004211236.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
 gi|321166410|gb|ADW72109.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
          Length = 650

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 616

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 692

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-R-NRW-RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK  +   +   N   +  ++ A +     PK  LLVGP G GKT +++ +A
Sbjct: 233 KDVAGEDEAKELLTEMVDYLNHPDKYSKIGARI-----PKGALLVGPPGTGKTLLAKAVA 287

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 288 GEAGVPFFSISGSEFVEM-FVGMGAAKV-RDLFEQA 321


>gi|269926167|ref|YP_003322790.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789827|gb|ACZ41968.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 643

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G Q+AK  +A  +    +  +  A L   + P+ +LLVGP G GKT +SR +A  A
Sbjct: 161 DDVAGVQEAKEELAEIVE-FLKYPEKFAALGARI-PRGVLLVGPPGTGKTLLSRAVAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 219 GVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 249


>gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 615

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 168 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 223 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 255


>gi|126668409|ref|ZP_01739366.1| ftsH; cell division protein [Marinobacter sp. ELB17]
 gi|126627118|gb|EAZ97758.1| ftsH; cell division protein [Marinobacter sp. ELB17]
          Length = 613

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N      L A +     PK ILLVGP G GKT ++R +A 
Sbjct: 157 DVAGVDEAKAELQEVIDFLQNPREYGSLGARM-----PKGILLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 EAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf]
 gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 601

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|149410903|ref|XP_001508651.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 690

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 330 TAKVLRDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 387

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 388 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFSLARKNAPCILFIDEIDA 446

Query: 122 VREQ 125
           V  +
Sbjct: 447 VGRK 450


>gi|198442897|ref|NP_001128336.1| AFG3-like protein 2 [Rattus norvegicus]
          Length = 802

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel]
 gi|157784493|gb|ABV72994.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel]
          Length = 636

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 156 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 260


>gi|332654867|ref|ZP_08420609.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516210|gb|EGJ45818.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 605

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    +  +   + A L     PK  LLVGP G GKT +++ +A 
Sbjct: 168 DVAGEDEAKELLSEIVDFLHDPAKYAAIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VGR   ++ RDL   A 
Sbjct: 223 EANVPFFSIAGSEFVEM-FVGRGAAKV-RDLFKQAN 256


>gi|302381982|ref|YP_003817805.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192610|gb|ADL00182.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 646

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 162 EDVAGVDEAKEELQEVVDFLKDPGKFQRLGGKI-----PKGALLVGPPGTGKTLLARAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 217 GEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 266


>gi|300192933|ref|NP_006787.2| AFG3-like protein 2 [Homo sapiens]
 gi|126302516|sp|Q9Y4W6|AFG32_HUMAN RecName: Full=AFG3-like protein 2; AltName: Full=Paraplegin-like
           protein
 gi|40675546|gb|AAH65016.1| AFG3 ATPase family gene 3-like 2 (yeast) [Homo sapiens]
          Length = 797

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 352

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 353 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 411

Query: 122 VREQ 125
           V  +
Sbjct: 412 VGRK 415


>gi|110625761|ref|NP_081406.1| AFG3-like protein 2 [Mus musculus]
 gi|81914515|sp|Q8JZQ2|AFG32_MOUSE RecName: Full=AFG3-like protein 2
 gi|22478102|gb|AAH36999.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Mus musculus]
 gi|29144877|gb|AAH43056.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Mus musculus]
          Length = 802

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNIL 57
           M       P +I       + G  +AK+ +      L+N  +   L   L     PK +L
Sbjct: 284 MSHRIEIDPEDIHVTF-SDVKGVDEAKQELLNIVEFLKNPDKFSALGGKL-----PKGVL 337

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVR 115
           LVGP G GKT ++R +A  AG PF  V   +F E  +G   R V  + R   + A  +V 
Sbjct: 338 LVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVF 397

Query: 116 ESRRDEVREQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDK 163
               D V  + + +     A + I   L           V        RK L    +   
Sbjct: 398 IDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFRQNEGVIVLGATNRRKDLDKALMRPG 457

Query: 164 EIDIEVADTSSD 175
             D+E+     D
Sbjct: 458 RFDVEIYINKPD 469


>gi|297702168|ref|XP_002828063.1| PREDICTED: AFG3-like protein 2-like [Pongo abelii]
          Length = 797

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 352

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 353 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 411

Query: 122 VREQ 125
           V  +
Sbjct: 412 VGRK 415


>gi|114672121|ref|XP_512199.2| PREDICTED: AFG3-like protein 2 isoform 3 [Pan troglodytes]
          Length = 797

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 352

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 353 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 411

Query: 122 VREQ 125
           V  +
Sbjct: 412 VGRK 415


>gi|296284801|ref|ZP_06862799.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 787

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + + GQ  A + ++ A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 461 LERDLKQVVFGQDAAVKKLSTAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTEVA 514

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA + G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 RQLASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHS 568


>gi|255071009|ref|XP_002507586.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
 gi|226522861|gb|ACO68844.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299]
          Length = 619

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 161 DDVAGVDEAKNDFMEVVEFLKRPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + A  I+     D V R +     
Sbjct: 216 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFVDEIDAVGRSRGTGIG 274

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++V D  
Sbjct: 275 GGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDPALLRPGRFDRQVTVDVPDVK 334

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             I    +             L   V      K+           L+ + +   I     
Sbjct: 335 GRIEILKVHA-------KNKRLTDDVDIETIAKRTPGFSGADLSNLLNEAA---ILTGRR 384

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            +D+I +VE       D  D+IVA   G
Sbjct: 385 GKDAITLVEID-----DSVDRIVAGMEG 407


>gi|224538106|ref|ZP_03678645.1| hypothetical protein BACCELL_02996 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520284|gb|EEF89389.1| hypothetical protein BACCELL_02996 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 698

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 193 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 250

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +A   A   
Sbjct: 251 NVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARAKAAAMGG 309

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 310 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 369

Query: 176 ISNFDIP 182
              F + 
Sbjct: 370 KEVFGVH 376


>gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 503

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIDEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|330998242|ref|ZP_08322068.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
 gi|329568934|gb|EGG50732.1| cell division protease FtsH [Paraprevotella xylaniphila YIT 11841]
          Length = 695

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 31/178 (17%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK  VA  +   +N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 187 KDVAGQAGAKMEVAEIVEFLKNPKKFTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  + R   + +  I+     D V R +    A
Sbjct: 242 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIIFIDEIDAVGRARGKNPA 300

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               +ER      +L  + G    S        N  ++  K L      D++I +++ 
Sbjct: 301 MGGNDERENTLNQLLTEMDGFGTNSGVIILAATNRVDILDKALLRAGRFDRQIHVDLP 358


>gi|149064526|gb|EDM14729.1| AFG3(ATPase family gene 3)-like 2 (yeast) [Rattus norvegicus]
          Length = 724

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|67458531|ref|YP_246155.1| ATP-dependent metalloprotease FtsH [Rickettsia felis URRWXCal2]
 gi|75537002|sp|Q4UN68|FTSH_RICFE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|67004064|gb|AAY60990.1| ATP-dependent metalloprotease FtsH [Rickettsia felis URRWXCal2]
          Length = 635

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|331001887|ref|ZP_08325408.1| hypothetical protein HMPREF0491_00270 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412210|gb|EGG91604.1| hypothetical protein HMPREF0491_00270 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 592

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 43/239 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 137 KDVAGEDEAKESLTEIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 191

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL                 +QA   A   I
Sbjct: 192 GEADVPFFSLSGSDFVEM-FVGVGASRV-RDLF----------------KQAQEAAPAII 233

Query: 135 -LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNL 192
            +D +     + ++R             + E +  +    S++  FD   G  V G  N 
Sbjct: 234 FIDEIDAIGKSRDSR---------MGGGNDEREQTLNQLLSEMDGFDSSKGLIVLGATNR 284

Query: 193 SELFSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            E+    +    +   R+ V     +     L     D L+D D+V  ++I +  +  +
Sbjct: 285 PEILDPALLRPGRFDRRVIVERPDLKGRVDILRVHSKDVLMD-DSVDLEAIGLATSGAV 342


>gi|325184426|emb|CCA18918.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 675

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 31/237 (13%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LR+  +  +L   L     PK +LL GP G GKT ++R +A 
Sbjct: 230 DVKGANEAKEELEEIVEFLRDPEKFTRLGGKL-----PKGVLLTGPPGTGKTLLARAIAG 284

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-------RE 124
            A  PF     ++F E+ YVG    ++ RDL +     A  I+     D +        +
Sbjct: 285 EASVPFFYASGSEFEEM-YVGVGARRV-RDLFEAAKKKAPCIIFIDEIDAIGGTRKLKEQ 342

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           QA      ++L  + G   T         N  +V    L      D+ + + + D +   
Sbjct: 343 QAMKMTLNQLLVEMDGFDQTKGIIVVGATNYPDVLDNALVRPGRFDRHVIVALPDVAGRK 402

Query: 177 SNFDIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +   G      ++  ++ ++        ++   + +   +    E+D  +DM++
Sbjct: 403 EILEFYAGKLPLAEDVDIDILARATPGMSGAELSNLINEAALKASMKEADE-VDMES 458


>gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 616

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 616

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|189235957|ref|XP_969110.2| PREDICTED: similar to AGAP006949-PA [Tribolium castaneum]
          Length = 771

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 27/247 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 287 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 344

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 345 NVPFITVSGSEFLEM-FVGVGPSRVRDLFSMARKHAPCILFIDEIDAVGRKRGGRSFGGH 403

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 404 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRIDILDKALLRPGRFDRQIFVPAPDIKGRA 463

Query: 177 SNFDIPGGASVGILNLSELFSKV--MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S F +  G     L+ SEL  K+  +  G       +V      +   + +  I+M    
Sbjct: 464 SIFKVHLGPLKTNLDKSELARKMAALTPGFTGADIANVCNEAALIAARDLNESINMKNF- 522

Query: 235 RDSIQMV 241
             +I+ V
Sbjct: 523 EQAIERV 529


>gi|125528347|gb|EAY76461.1| hypothetical protein OsI_04395 [Oryza sativa Indica Group]
          Length = 802

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 320 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 374

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G PF+ +  + F E+ +VG    ++ R+L   A
Sbjct: 375 GESGVPFLSISGSDFMEM-FVGVGPSRV-RNLFQEA 408


>gi|85058349|ref|YP_454051.1| ATP-dependent metalloprotease [Sodalis glossinidius str.
           'morsitans']
 gi|84778869|dbj|BAE73646.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 643

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  ++  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEELSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|312115986|ref|YP_004013582.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221115|gb|ADP72483.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC
           17100]
          Length = 641

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LR+  + Q+L   +     P+  LLVGP G GKT ++R +A
Sbjct: 156 DDVAGVDEAKEELEEIVEFLRDPQKFQRLGGRI-----PRGALLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
 gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
          Length = 616

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|197124755|ref|YP_002136706.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196174604|gb|ACG75577.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 618

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    +  +    L    MPK +LLVGP G GKT +++ +A  A 
Sbjct: 162 DVAGVDEAKEELKEIV-TFLKDPKSYGRLGA-RMPKGVLLVGPPGTGKTLLAKAVAGEAS 219

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            R +A        LDAL
Sbjct: 220 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RAKAPAIIFIDELDAL 265

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            G+   S          ++  ++   ++++  D S+ I
Sbjct: 266 -GRARASMPGMSGGHDEKEQTLNQLLVELDGFDPSAGI 302


>gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 615

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E        + G ++ K   + +   L+N  R  +L A +     PK +LL GP G G
Sbjct: 150 PDEKRRITFEDVAGYEEVKEELKEIVDYLKNPRRYIELGARI-----PKGVLLYGPPGTG 204

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 205 KTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASRV-RDLFEQA 247


>gi|254995321|ref|ZP_05277511.1| cell division protein (ftsH) [Anaplasma marginale str. Mississippi]
          Length = 610

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   +   ++R + Q+L   +     PK  LL+GP G GKT ++R +A
Sbjct: 158 EDVAGIDEAKEELVEIVDFLKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RD+ +     A  I+     D V
Sbjct: 213 GEASVPFFSISGSDFVEM-FVGVGASRV-RDMFEQGKKHAPCIIFVDEIDAV 262


>gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
 gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
          Length = 854

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 168 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 223 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 255


>gi|196013470|ref|XP_002116596.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
 gi|190580872|gb|EDV20952.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
          Length = 506

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 22/123 (17%)

Query: 1   MKLTFNF--SPREI------VSELDRYIIGQQDAKRAV---AIALRNR--WRRQQLPADL 47
           MK++F+     +EI             + G  +AK+ +      L++   ++R       
Sbjct: 48  MKISFSLVSKQKEIMPDMSEKKYRFTDVQGVDEAKQELQDIVDFLKDPEKYKRLGG---- 103

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
               +P  ILL+GP G GKT ++R +A  AG PF     ++F E+ +VG    ++ R+L 
Sbjct: 104 ---RLPTGILLIGPPGTGKTLLARAVAGEAGVPFFFCSGSEFDEM-FVGVGAARV-RNLF 158

Query: 108 DVA 110
             A
Sbjct: 159 AAA 161


>gi|220919476|ref|YP_002494780.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957330|gb|ACL67714.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 618

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    +  +    L    MPK +LLVGP G GKT +++ +A  A 
Sbjct: 162 DVAGVDEAKEELKEIV-TFLKDPKSYGRLGA-RMPKGVLLVGPPGTGKTLLAKAVAGEAS 219

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            R +A        LDAL
Sbjct: 220 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RAKAPAIIFIDELDAL 265

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            G+   S          ++  ++   ++++  D S+ I
Sbjct: 266 -GRARASMPGMSGGHDEKEQTLNQLLVELDGFDPSAGI 302


>gi|154494841|ref|ZP_02033846.1| hypothetical protein PARMER_03885 [Parabacteroides merdae ATCC
           43184]
 gi|154085391|gb|EDN84436.1| hypothetical protein PARMER_03885 [Parabacteroides merdae ATCC
           43184]
          Length = 664

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 195 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             A  PF  +  + F E+ +VG     V  + R   + A  IV     D V R +     
Sbjct: 250 GEADVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARGKNVN 308

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                   N   ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 309 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 368

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 369 NERKEIFGVH 378


>gi|119493542|ref|ZP_01624207.1| cell division protein; FtsH [Lyngbya sp. PCC 8106]
 gi|119452596|gb|EAW33778.1| cell division protein; FtsH [Lyngbya sp. PCC 8106]
          Length = 615

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +A     L+N  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGVEEAKTELAEIIDFLKNPQRYTEIGARI-----PKGVLLVGPPGTGKTLMAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 EAGVPFFSISASEFVEL-FVGTGAARV-RDLFEQA 253


>gi|126437720|ref|YP_001073411.1| Mername-AA223 peptidase [Mycobacterium sp. JLS]
 gi|126237520|gb|ABO00921.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. JLS]
          Length = 784

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 164 DVAGADEAVEELYEIKDFLQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 219 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 251


>gi|115440989|ref|NP_001044774.1| Os01g0842600 [Oryza sativa Japonica Group]
 gi|75330839|sp|Q8S2A7|FTSH3_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 3,
           mitochondrial; Short=OsFTSH3; Flags: Precursor
 gi|19571026|dbj|BAB86453.1| putative AAA-metalloprotease FtsH [Oryza sativa Japonica Group]
 gi|113534305|dbj|BAF06688.1| Os01g0842600 [Oryza sativa Japonica Group]
 gi|125572602|gb|EAZ14117.1| hypothetical protein OsJ_04041 [Oryza sativa Japonica Group]
 gi|215712383|dbj|BAG94510.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 320 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 374

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G PF+ +  + F E+ +VG    ++ R+L   A
Sbjct: 375 GESGVPFLSISGSDFMEM-FVGVGPSRV-RNLFQEA 408


>gi|260886972|ref|ZP_05898235.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
 gi|260863034|gb|EEX77534.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185]
          Length = 670

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L++  +   L A +     PK +LL GP G GKT ++R +A
Sbjct: 164 EDVAGADEAKQELEEVVEFLKHPKKFNDLGARI-----PKGVLLYGPPGTGKTLLARAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 219 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQAKKN 255


>gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
 gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
          Length = 850

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 214 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 246


>gi|167823656|ref|ZP_02455127.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226196166|ref|ZP_03791751.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931752|gb|EEH27754.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 628

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|148677700|gb|EDL09647.1| mCG127904 [Mus musculus]
          Length = 726

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 351

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 352 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 410

Query: 122 VREQ 125
           V  +
Sbjct: 411 VGRK 414


>gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B]
 gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus
           cellulolyticus 11B]
          Length = 654

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 152 DVAGADEAIEELMEIKEFLENPAKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 207 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 239


>gi|111021379|ref|YP_704351.1| cell division protein FtsH [Rhodococcus jostii RHA1]
 gi|110820909|gb|ABG96193.1| cell division protein FtsH [Rhodococcus jostii RHA1]
          Length = 756

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPMRYQSLGAKI-----PRGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 254


>gi|49474666|ref|YP_032708.1| cell division protein ftsH [Bartonella quintana str. Toulouse]
 gi|49240170|emb|CAF26634.1| Cell division protein ftsH [Bartonella quintana str. Toulouse]
          Length = 717

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVEFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|296117359|ref|ZP_06835949.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
 gi|295976125|gb|EFG82913.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
          Length = 644

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKGELQEIVDFLRDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKAAPCIIFIDEIDAV 260


>gi|225026759|ref|ZP_03715951.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
 gi|224955878|gb|EEG37087.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353]
          Length = 604

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL-RNRW--RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +A  +       +  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 167 DVAGEDEAKENLAEIVDYLHQPSKYSEIGASM-----PKGVLLVGPPGTGKTMLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 222 EANVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 254


>gi|92118966|ref|YP_578695.1| ATP-dependent metalloprotease FtsH [Nitrobacter hamburgensis X14]
 gi|91801860|gb|ABE64235.1| membrane protease FtsH catalytic subunit [Nitrobacter hamburgensis
           X14]
          Length = 638

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   LR+  + Q+L   +     P+ +LLVGP G GKT I+R +A
Sbjct: 156 EDVAGVDEAKQDLQEIVEFLRDPSKFQRLGGRI-----PRGVLLVGPPGTGKTLIARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 247


>gi|34580974|ref|ZP_00142454.1| cell division protein ftsH [Rickettsia sibirica 246]
 gi|28262359|gb|EAA25863.1| cell division protein ftsH [Rickettsia sibirica 246]
          Length = 637

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 616

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELKEVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|195016134|ref|XP_001984347.1| GH15066 [Drosophila grimshawi]
 gi|193897829|gb|EDV96695.1| GH15066 [Drosophila grimshawi]
          Length = 813

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 314 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 371

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 372 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGH 430

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 431 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRA 490

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  GA    L+ + L  K+
Sbjct: 491 SIFKVHLGALKTELDKNGLARKM 513


>gi|291550705|emb|CBL26967.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 728

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 25/225 (11%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+ LD  + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +
Sbjct: 219 VTFLD--VAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLL 271

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           ++ +A  A  PF  +  + F E+ YVG    ++ RDL   A     +     +     I+
Sbjct: 272 AKAVAGEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA-----QQMAPCIVFIDEID 324

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           A  +  D+ +G        +   + L + +  D    + V   ++     D P     G 
Sbjct: 325 AIGKSRDSALGGGGNDEREQTLNQLLAEMDGFDTNKGLLVLAATNRPEVLD-PALLRPGR 383

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +   +  K    GR + +++  +         + D  ++++ + 
Sbjct: 384 FDRRIIVDKPDLKGRVEILKVHAKD-------VKMDETVNLEEIA 421


>gi|167764968|ref|ZP_02437089.1| hypothetical protein BACSTE_03361 [Bacteroides stercoris ATCC
           43183]
 gi|167697637|gb|EDS14216.1| hypothetical protein BACSTE_03361 [Bacteroides stercoris ATCC
           43183]
          Length = 675

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    ++ Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 191 KDVAGLAEAKQEVEEIVE-FLKQPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 248

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +    A   
Sbjct: 249 NVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARGKAAAMGG 307

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 308 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 367

Query: 176 ISNFDIP 182
              F + 
Sbjct: 368 KEVFGVH 374


>gi|148979037|ref|ZP_01815282.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
 gi|145962010|gb|EDK27298.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
          Length = 655

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I   L   + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G
Sbjct: 144 MSEEQIK-TLFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPG 197

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 198 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 256

Query: 121 EV 122
            V
Sbjct: 257 AV 258


>gi|56417151|ref|YP_154225.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475516|ref|YP_002563933.1| cell division protein (ftsH) [Anaplasma marginale str. Florida]
 gi|255003503|ref|ZP_05278467.1| cell division protein (ftsH) [Anaplasma marginale str. Puerto Rico]
 gi|255004625|ref|ZP_05279426.1| cell division protein (ftsH) [Anaplasma marginale str. Virginia]
 gi|56388383|gb|AAV86970.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419654|gb|ACM49677.1| cell division protein (ftsH) [Anaplasma marginale str. Florida]
          Length = 610

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   +   ++R + Q+L   +     PK  LL+GP G GKT ++R +A
Sbjct: 158 EDVAGIDEAKEELVEIVDFLKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RD+ +     A  I+     D V
Sbjct: 213 GEASVPFFSISGSDFVEM-FVGVGASRV-RDMFEQGKKHAPCIIFVDEIDAV 262


>gi|15891991|ref|NP_359705.1| cell division protein ftsH [Rickettsia conorii str. Malish 7]
 gi|22001595|sp|Q92JJ9|FTSH_RICCN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|15619105|gb|AAL02606.1| cell division protein ftsH [Rickettsia conorii str. Malish 7]
          Length = 637

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|296222181|ref|XP_002757077.1| PREDICTED: AFG3-like protein 2 [Callithrix jacchus]
          Length = 798

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 353

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 354 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 412

Query: 122 VREQ 125
           V  +
Sbjct: 413 VGRK 416


>gi|269958447|ref|YP_003328234.1| putative protease [Anaplasma centrale str. Israel]
 gi|269848276|gb|ACZ48920.1| putative protease [Anaplasma centrale str. Israel]
          Length = 610

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   +   ++R + Q+L   +     PK  LL+GP G GKT ++R +A
Sbjct: 158 EDVAGIDEAKEELVEIVDFLKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RD+ +     A  I+     D V
Sbjct: 213 GEASVPFFSISGSDFVEM-FVGVGASRV-RDMFEQGKKHAPCIIFVDEIDAV 262


>gi|254487525|ref|ZP_05100730.1| cell division protein FtsH [Roseobacter sp. GAI101]
 gi|214044394|gb|EEB85032.1| cell division protein FtsH [Roseobacter sp. GAI101]
          Length = 635

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 151 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 206 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 255


>gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
 gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC
           15579]
          Length = 601

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 601

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
          Length = 601

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|167836219|ref|ZP_02463102.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           MSMB43]
          Length = 628

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|90419586|ref|ZP_01227496.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336523|gb|EAS50264.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 820

 Score = 66.9 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R + GQ  A  ++A A++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 463 LDAQLKRVVYGQDAAIGSLASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 516

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 517 RQLAAALGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 570


>gi|332704015|ref|ZP_08424103.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554164|gb|EGJ51208.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 769

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ +EL   + GQ  A  ++A ++    +R +  A L +E  P  N LL+GPTGVGKT 
Sbjct: 444 KDLDNELKGRVFGQDQAVDSIARSI----KRSR--AGLGNETRPLGNFLLIGPTGVGKTE 497

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++++LA + G  F++ +++++ E   V R
Sbjct: 498 LAKQLAEVMGVKFLRYDMSEYMEKHAVAR 526


>gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 628

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIEEAKEELQEVVTFLKQPEKFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|222424562|dbj|BAH20236.1| AT5G42270 [Arabidopsis thaliana]
          Length = 510

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 57  DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 111

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 112 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 144


>gi|229586278|ref|YP_002844779.1| ATP-dependent metalloprotease FtsH [Rickettsia africae ESF-5]
 gi|228021328|gb|ACP53036.1| ATP-dependent metalloprotease FtsH [Rickettsia africae ESF-5]
          Length = 637

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|297745943|emb|CBI15999.3| unnamed protein product [Vitis vinifera]
          Length = 552

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  R  ++ A       P+ +LLVG  G GKT +++ +A 
Sbjct: 75  DVAGVDEAKEELEEIVEFLRNPDRYVRVGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 129

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV------REQA 126
            A  PFI    ++F E+ YVG     V  +       A +I+     D V      R + 
Sbjct: 130 EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 188

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT- 172
                      ++L  + G  + S        N  +V    LR     D+ + +E  D  
Sbjct: 189 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDRI 248

Query: 173 ------SSDISNFDIPGGASVGILNLSEL 195
                    +S  ++P G  V + +++ +
Sbjct: 249 GREAILKVHVSKKELPLGEDVDLSDIASM 277


>gi|108755190|emb|CAK32582.1| putative ATP-dependent Zn protease [uncultured organism]
          Length = 641

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 106/275 (38%), Gaps = 43/275 (15%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ V      L++  + Q+L   L     PK  LLVGP G GKT ++R +A
Sbjct: 155 DDVAGIDEAKQEVEEIIDFLKDPQKFQRLGGKL-----PKGCLLVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDELDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +  ++++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFESNEGVILISATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQM 240
           +   +       GR+K +++ ++K    L  D   R+I          D+  +  ++  +
Sbjct: 317 DRQVVVPNPDILGREKIMKVHMRK--VPLAPDVDARVIARGTPGFSGADLANLVNEAALL 374

Query: 241 V--ENYGIVFLDEF----DKIVARDSGNGIGVSRE 269
                  +V +DEF    DK++       + ++ E
Sbjct: 375 AARRGRRVVTMDEFEAAKDKVMMGPERRSMVMTDE 409


>gi|307730491|ref|YP_003907715.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|323526824|ref|YP_004228977.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001]
 gi|307585026|gb|ADN58424.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|323383826|gb|ADX55917.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001]
          Length = 629

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|301123763|ref|XP_002909608.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262100370|gb|EEY58422.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 658

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 31/237 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  R  +L  +L     PK +LL GP G GKT ++R +A 
Sbjct: 222 DVKGATEAKHELEEIVQFLRDPARFTRLGGNL-----PKGVLLTGPPGTGKTLLARAIAG 276

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-------RE 124
            AG PF     ++F E+ YVG    ++ RDL +     A  IV     D +        +
Sbjct: 277 EAGVPFFYSSGSEFEEM-YVGVGARRV-RDLFESAKRKAPCIVFIDEIDAIGGTRKLKEQ 334

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           QA      ++L  + G             N  +V    L      D+ + +++ D +   
Sbjct: 335 QAMKMTLNQLLVEMDGFDQNKGIIVIGATNFPDVLDNALIRPGRFDRHVTVDLPDVAGRK 394

Query: 177 SNFDIPGG-ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
              +   G   +G     ++ ++        ++   V +        +S   ++MD 
Sbjct: 395 EILEFYAGKIPLGEDVDLDVLARATPGMSGAELSNLVNEAA-LRASMKSADFVNMDA 450


>gi|254502453|ref|ZP_05114604.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia
           alexandrii DFL-11]
 gi|222438524|gb|EEE45203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia
           alexandrii DFL-11]
          Length = 799

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT ++R+LA
Sbjct: 452 LKRVVYGQDNAIETLASAIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVARQLA 505

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 506 SSMGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 555


>gi|170695459|ref|ZP_02886604.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M]
 gi|170139650|gb|EDT07833.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M]
          Length = 629

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 601

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|83718920|ref|YP_443288.1| cell division protein FtsH [Burkholderia thailandensis E264]
 gi|167582304|ref|ZP_02375178.1| cell division protein FtsH [Burkholderia thailandensis TXDOH]
 gi|167621274|ref|ZP_02389905.1| cell division protein FtsH [Burkholderia thailandensis Bt4]
 gi|257139524|ref|ZP_05587786.1| cell division protease FtsH [Burkholderia thailandensis E264]
 gi|83652745|gb|ABC36808.1| cell division protein FtsH [Burkholderia thailandensis E264]
          Length = 628

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|53718995|ref|YP_107981.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|53725545|ref|YP_102540.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76811845|ref|YP_333019.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121598236|ref|YP_992623.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124386453|ref|YP_001026575.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126439432|ref|YP_001058525.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126448487|ref|YP_001080140.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|126452144|ref|YP_001065785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|134282887|ref|ZP_01769590.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|167002789|ref|ZP_02268579.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|167719065|ref|ZP_02402301.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei DM98]
 gi|167738063|ref|ZP_02410837.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
 gi|167815247|ref|ZP_02446927.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 91]
 gi|167845200|ref|ZP_02470708.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           B7210]
 gi|167893752|ref|ZP_02481154.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
 gi|167902200|ref|ZP_02489405.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei NCTC
           13177]
 gi|167910442|ref|ZP_02497533.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
 gi|167918468|ref|ZP_02505559.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
 gi|217423524|ref|ZP_03455025.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237811779|ref|YP_002896230.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238563620|ref|ZP_00438574.2| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242316664|ref|ZP_04815680.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254177646|ref|ZP_04884301.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|254180202|ref|ZP_04886801.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|254188379|ref|ZP_04894890.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198030|ref|ZP_04904452.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254199451|ref|ZP_04905817.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|254205764|ref|ZP_04912116.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|254258466|ref|ZP_04949520.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254298036|ref|ZP_04965489.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|254358835|ref|ZP_04975108.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|52209409|emb|CAH35354.1| FtsH endopeptidase [Burkholderia pseudomallei K96243]
 gi|52428968|gb|AAU49561.1| cell division protein FtsH [Burkholderia mallei ATCC 23344]
 gi|76581298|gb|ABA50773.1| cell division protein FtsH [Burkholderia pseudomallei 1710b]
 gi|121227046|gb|ABM49564.1| cell division protein FtsH [Burkholderia mallei SAVP1]
 gi|124294473|gb|ABN03742.1| cell division protein FtsH [Burkholderia mallei NCTC 10229]
 gi|126218925|gb|ABN82431.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|126225786|gb|ABN89326.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|126241357|gb|ABO04450.1| cell division protein FtsH [Burkholderia mallei NCTC 10247]
 gi|134245973|gb|EBA46064.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|147749047|gb|EDK56121.1| cell division protein FtsH [Burkholderia mallei FMH]
 gi|147753207|gb|EDK60272.1| cell division protein FtsH [Burkholderia mallei JHU]
 gi|148027962|gb|EDK85983.1| cell division protein FtsH [Burkholderia mallei 2002721280]
 gi|157807652|gb|EDO84822.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157936058|gb|EDO91728.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698685|gb|EDP88655.1| cell division protein FtsH [Burkholderia mallei ATCC 10399]
 gi|169654771|gb|EDS87464.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|184210742|gb|EDU07785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655]
 gi|217393382|gb|EEC33403.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237505527|gb|ACQ97845.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346]
 gi|238520336|gb|EEP83797.1| cell division protease FtsH [Burkholderia mallei GB8 horse 4]
 gi|242139903|gb|EES26305.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|243061550|gb|EES43736.1| cell division protein FtsH [Burkholderia mallei PRL-20]
 gi|254217155|gb|EET06539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 628

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|289808428|ref|ZP_06539057.1| ATP-dependent metalloprotease FtsH [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 115

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 2   LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 58

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 59  TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 100


>gi|114777791|ref|ZP_01452722.1| putative ATPase with chaperone activity, two ATP-binding domains
           [Mariprofundus ferrooxydans PV-1]
 gi|114551782|gb|EAU54322.1| putative ATPase with chaperone activity, two ATP-binding domains
           [Mariprofundus ferrooxydans PV-1]
          Length = 869

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   +IGQ +A + VA A+       +  A ++D   P  + L +GPTGVGKT +
Sbjct: 565 KLESVLHERVIGQDEAVQVVADAV------LRARAGIQDPNQPIGSFLFMGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LAR         ++++++++ E   V R V
Sbjct: 619 ARTLARTLFDSDHNMVRIDMSEYMEKHAVSRLV 651


>gi|157827939|ref|YP_001494181.1| cell division protein ftsH [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932628|ref|YP_001649417.1| cell division protein [Rickettsia rickettsii str. Iowa]
 gi|157800420|gb|ABV75673.1| cell division protein ftsH [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907715|gb|ABY72011.1| cell division protein [Rickettsia rickettsii str. Iowa]
          Length = 637

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|325295222|ref|YP_004281736.1| ATP-dependent metalloprotease FtsH [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065670|gb|ADY73677.1| ATP-dependent metalloprotease FtsH [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 626

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 34/287 (11%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  V+  +   +N  + QQL   +     PK +LL G  G GKT +++ +A
Sbjct: 157 KDVAGIDEVKEEVSEIVDFLKNPKKFQQLGGRI-----PKGVLLAGAPGTGKTLLAKAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PF+ V  ++F E+ +VG    ++ RDL +     A  IV     D V  +     
Sbjct: 212 GEANVPFLSVSGSEFVEM-FVGVGASRV-RDLFEQAKRHAPCIVFIDEIDAVGRKRGA-- 267

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G T   + RE    +L       +  +  +   +++  +   P     G  
Sbjct: 268 ---------GFTGGHDEREQTLNQLLVEMDGFESSEGIIVIAATNRPDILDPALLRPGRF 318

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
           +           GR + +++  +     L  D     +D++ + R +           ++
Sbjct: 319 DRQIHVPLPDVRGRLEILKIHTKD--KPLAED-----VDLEVIARSTPGFSGADLANIVN 371

Query: 251 EFDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTKYGSINTDH 295
           E   I AR +   I +    E   +  + +   S V ++   + T +
Sbjct: 372 EAALIAARKNHGKITMEDFEEAKDKVTMGIERKSMVLSEEEKVTTAY 418


>gi|293606967|ref|ZP_06689313.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
 gi|292814633|gb|EFF73768.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
          Length = 513

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L   + PK +LLVGP G GKT +++ +A  A 
Sbjct: 62  DVAGVDEAKAELVEIV-DFLKNPQEYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAA 119

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            +  A I  +E  LDAL
Sbjct: 120 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQARG----------QAPAIIFIDE--LDAL 165

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D       G  +
Sbjct: 166 GRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAGRFD 224

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++ V+K
Sbjct: 225 RQVLVDRPDKKGRLDILKVHVKK 247


>gi|256823581|ref|YP_003147544.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069]
 gi|256797120|gb|ACV27776.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069]
          Length = 641

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 160 DVAGVEEAKEEVGELVDFLRDPRKFQRLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 215 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 250


>gi|114327774|ref|YP_744931.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
 gi|114315948|gb|ABI62008.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  + Q+L   +     PK +LLVGP G GKT ++R +A
Sbjct: 157 EDVAGIDEAKGELQEIVEFLKDPQKFQRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 261


>gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 639

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 155 EDVAGIDEAKQELEEIVEFLKDPQKFQRLGGKI-----PKGCLLVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +           GR+K I++ ++K
Sbjct: 317 DRQVTVPNPDILGREKIIKVHMRK 340


>gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis]
          Length = 694

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L+   +  +L A       P  +LLVGP G GKT ++R +A
Sbjct: 150 DDVAGVDEAKEELKEIVDFLKFPDKFTRLGA-----RPPSGVLLVGPPGTGKTLLARAVA 204

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVRE 124
             A  PF  +  ++F E+ YVG     V ++       A  IV     D V +
Sbjct: 205 GEADVPFFSIAASEFVEL-YVGMGAMRVRELFATARKEAPAIVFIDEIDAVAK 256


>gi|255024485|ref|ZP_05296471.1| cell division protein FtsH [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 137 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 194

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 195 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 227


>gi|149375762|ref|ZP_01893530.1| ATP-dependent Zn protease [Marinobacter algicola DG893]
 gi|149359887|gb|EDM48343.1| ATP-dependent Zn protease [Marinobacter algicola DG893]
          Length = 647

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 157 DVAGVDEAKEDVKELVDFLRDPSKFQRLGGSI-----PKGVLMVGQPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 247


>gi|121602051|ref|YP_988506.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis
           KC583]
 gi|310943119|sp|A1URA3|FTSH_BARBK RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|120614228|gb|ABM44829.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis
           KC583]
          Length = 764

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 KDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
 gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455]
          Length = 607

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G+ +AK  +   +         P   RD    MPK ILLVGP G GKT +++ +A  
Sbjct: 165 DVAGEDEAKENLTEIV----EYLHNPGRYRDIGAKMPKGILLVGPPGTGKTMLAKAVAGE 220

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 SNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 252


>gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
 gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
          Length = 654

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 164 DDVAGVDEAKEELQEVVDFLKDPGKFQRLGGKI-----PKGALLVGPPGTGKTLLARAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 219 GEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 268


>gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 627

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
           L   + G Q+AK  +   +       + P         +PK +LLVGP G GKT +++ +
Sbjct: 170 LFDDVAGIQEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAI 225

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 226 AGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 276


>gi|157964108|ref|YP_001498932.1| ATP-dependent metalloprotease FtsH [Rickettsia massiliae MTU5]
 gi|157843884|gb|ABV84385.1| ATP-dependent metalloprotease FtsH [Rickettsia massiliae MTU5]
          Length = 639

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 157 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 261


>gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
 gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM
           14600]
          Length = 672

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G+++AK  +   +   +             MPK ILLVGP G GKT +++ +A  A
Sbjct: 169 DDVAGEEEAKENLQEIVE--YLHDPHKYTAIGAKMPKGILLVGPPGTGKTMLAKAVAGEA 226

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQAS 127
             PF  +  ++F E+ +VG     V  + R   + A  IV     D + ++  
Sbjct: 227 NVPFFSMSGSEFVEM-FVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGKKRE 278


>gi|254444990|ref|ZP_05058466.1| ATP-dependent metallopeptidase HflB subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198259298|gb|EDY83606.1| ATP-dependent metallopeptidase HflB subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 648

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 91/230 (39%), Gaps = 39/230 (16%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  V+     L++  + Q++   +     PK IL+VGP G GKT +++ +A  
Sbjct: 161 VAGCDEAKEEVSEVIDFLKDPKKFQRMGGRI-----PKGILMVGPPGTGKTLLAKAVAGE 215

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A  PF  +  + F E+ +VG    ++                 ++ R+ A        +D
Sbjct: 216 ADVPFFSISGSDFVEM-FVGVGASRV-------------RDMFEQGRKNAPCLIFVDEID 261

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSEL 195
           A+             R++       + E +  +     ++  FD   G   +   N +++
Sbjct: 262 AVG------------RQRGAGLGGGNDEREQTLNSLLVEMDGFDTTEGVIIIAATNRADV 309

Query: 196 FSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMV 241
             K +    +   ++ V     +   E+++  + ++   D V+  +I  V
Sbjct: 310 LDKALLRPGRFDRQVVVDLPDLRGRKEILQVHAKKIRLSDEVNLAAIARV 359


>gi|154253239|ref|YP_001414063.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum
           lavamentivorans DS-1]
 gi|154157189|gb|ABS64406.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum
           lavamentivorans DS-1]
          Length = 794

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ +EL R + GQ  A  A+A +++              E      L  GPTGVGKT +
Sbjct: 458 KDLDTELKRVVFGQNAAIDALAASIK-----LARAGLREAEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 ARQLASVLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|17865463|sp|Q9BAE0|FTSH_MEDSA RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|13183728|gb|AAK15322.1|AF332134_1 FtsH protease [Medicago sativa]
          Length = 706

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 254 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 308

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 309 EAGTPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 341


>gi|238650510|ref|YP_002916362.1| cell division protein ftsH [Rickettsia peacockii str. Rustic]
 gi|238624608|gb|ACR47314.1| cell division protein ftsH [Rickettsia peacockii str. Rustic]
          Length = 637

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|119492884|ref|ZP_01623933.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
 gi|119452912|gb|EAW34085.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106]
          Length = 618

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 16  LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   + G ++AK  +      L+   R   + A +     PK +LLVGP G GKT +++ 
Sbjct: 157 LFDDVAGIEEAKEELQEVVTFLKQPERFTAIGAKI-----PKGVLLVGPPGTGKTLLAKA 211

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  ++F E+ +VG     V  + R   + +  IV     D V
Sbjct: 212 IAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAKENSPCIVFIDEIDAV 263


>gi|266622975|ref|ZP_06115910.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
 gi|288865269|gb|EFC97567.1| cell division protein FtsH [Clostridium hathewayi DSM 13479]
          Length = 700

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 174 RDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 229 GEAKVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 262


>gi|114568747|ref|YP_755427.1| ATP-dependent metalloprotease FtsH [Maricaulis maris MCS10]
 gi|114339209|gb|ABI64489.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
          Length = 607

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 17/213 (7%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   +    +  Q    L    MPK ILLVGP G GKT  +R +A  A 
Sbjct: 159 DVAGVEEAKAELKEIVA-FLKDPQGYGRLGA-RMPKGILLVGPPGTGKTLFARAMAGEAS 216

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A            RE+A        LDAL
Sbjct: 217 VPFFSISGSEFVEM-FVGVGAARV-RDLFEKA------------REKAPAIIFIDELDAL 262

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDI-EVADTSSDISNFDIPGGASVGILNLSELFS 197
                         +K +       E+D  + +     ++  + P      +L       
Sbjct: 263 GRARGAYPGLGGHDEKEQTLNQLLSELDGFDPSRGLVLLAATNRPEVLDPALLRAGRFDR 322

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           +V+     K  R+++ + +   +  E D  +D 
Sbjct: 323 QVLVDRPDKSGRIAILQVHTHRIEIEDDTDLDE 355


>gi|326917424|ref|XP_003204999.1| PREDICTED: AFG3-like protein 2-like [Meleagris gallopavo]
          Length = 775

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 265 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYEDLGAKI-PKGAILTGPPGT 322

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 323 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 381

Query: 122 VREQ 125
           V  +
Sbjct: 382 VGRK 385


>gi|209517185|ref|ZP_03266030.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160]
 gi|209502321|gb|EEA02332.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160]
          Length = 629

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|167562363|ref|ZP_02355279.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           EO147]
 gi|167574340|ref|ZP_02367214.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis
           C6786]
          Length = 628

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|134295360|ref|YP_001119095.1| FtsH peptidase [Burkholderia vietnamiensis G4]
 gi|134138517|gb|ABO54260.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 631

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|312795599|ref|YP_004028521.1| cell division protein ftsH [Burkholderia rhizoxinica HKI 454]
 gi|312167374|emb|CBW74377.1| Cell division protein ftsH (EC 3.4.24.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 630

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis
           OL]
 gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis
           OL]
          Length = 616

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K   R V   L+N  +  +L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 169 DVAGADEEKEELREVIDFLKNPRKYIELGARI-----PKGILLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQA 256


>gi|297826289|ref|XP_002881027.1| hypothetical protein ARALYDRAFT_344684 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326866|gb|EFH57286.1| hypothetical protein ARALYDRAFT_344684 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 818

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 331 KDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATA 385

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 386 GESGVPFLSISGSDFMEM-FVGVGPSRVRHLFQEARQSAPSIIFIDEIDAI 435


>gi|291562571|emb|CBL41387.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium
           SS3/4]
          Length = 660

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK ++   +    N  +  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 174 DVAGEDEAKESLVEIVDFLHNPQKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 229 EAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 261


>gi|225434891|ref|XP_002283273.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297746048|emb|CBI16104.3| unnamed protein product [Vitis vinifera]
          Length = 820

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 332 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 386

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +  PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 387 GESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 436


>gi|168016254|ref|XP_001760664.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688024|gb|EDQ74403.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 634

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R ++ 
Sbjct: 181 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVSG 235

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 236 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 268


>gi|124025741|ref|YP_001014857.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
 gi|123960809|gb|ABM75592.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A]
          Length = 575

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 11  EIVSELDRYIIG--QQ-DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I       + G  Q+ D  + + I L+N     Q   DL     PK +LLVGP G GKT
Sbjct: 117 DIRKYTFDDVAGLNQESDELKEIVIFLKNP----QTLKDLGA-KTPKGVLLVGPPGTGKT 171

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 172 LLARSIAGEADVPFFSISASEFVEM-FVGVGAGRV-RDLFKSA 212


>gi|72382193|ref|YP_291548.1| peptidase M41, FtsH [Prochlorococcus marinus str. NATL2A]
 gi|72002043|gb|AAZ57845.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 575

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 11  EIVSELDRYIIG--QQ-DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I       + G  Q+ D  + + I L+N     Q   DL     PK +LLVGP G GKT
Sbjct: 117 DIRKYTFDDVAGLNQESDELKEIVIFLKNP----QTLKDLGA-KTPKGVLLVGPPGTGKT 171

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 172 LLARSIAGEADVPFFSISASEFVEM-FVGVGAGRV-RDLFKSA 212


>gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
 gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
          Length = 627

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 109/308 (35%), Gaps = 35/308 (11%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +      L+N       P       +P+ +LLVGP G GKT ++R +A
Sbjct: 156 KDVAGADEAKQELEEIIDFLKNP-----APFRAMGAKIPRGVLLVGPPGCGKTLLARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQASINA 130
             A  PF  +  + F E+ +VG    ++ RDL + A      I+     D V  Q     
Sbjct: 211 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKNQSPCIIFIDEIDAVGRQ----- 263

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN--------FDIP 182
             R      G      T      ++ DG   D+ I +  A    D+ +        FD  
Sbjct: 264 --RGAGLGGGHDEREQTLNQLLVEM-DGFEVDETIIVMAATNRPDVLDPALLRPGRFDRH 320

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSV---QKCYPELMRDESDRLIDMDTVHRDSIQ 239
                  L   +   +V  +G+  +  + V    K  P     +   L++   +      
Sbjct: 321 VTVDRPDLLGRKQILEVHLAGKPIEEEVKVDILAKRTPGFAGADLANLVNEAALLAARKG 380

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299
                   F D  D+IVA        +S +   + ++   E       +    TD I  I
Sbjct: 381 KKTISMAEFEDAIDRIVAGIEKRSRVISEK--DKKIIAFHEAGHALVAHNLPGTDPIHKI 438

Query: 300 ASGAFHVS 307
           +     ++
Sbjct: 439 SIIPRGMA 446


>gi|308095375|ref|ZP_05905382.2| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
 gi|308086280|gb|EFO35975.1| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
          Length = 408

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 146 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 258

Query: 121 EV 122
            V
Sbjct: 259 AV 260


>gi|282899237|ref|ZP_06307210.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281195873|gb|EFA70797.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 645

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 175 DVAGVDEAKAELEEIVDFLKNASKYTNLGAKI-----PKGVLLVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 230 EAGVPFFSISGSEFIEL-FVGVGAARV-RDLFEQA 262


>gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           230613]
          Length = 601

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +P +     D  + G  + K  +A  +   ++  R   + A +     PK +LLVGP G 
Sbjct: 150 TPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARI-----PKGVLLVGPPGT 203

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 GKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 643

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 24/268 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  +L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F
Sbjct: 188 IVDFLKNPDRYIRLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSF 242

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALVGKTATSNTR 148
            E+ +VG    ++ RDL + A          DE+       A      A           
Sbjct: 243 IEM-FVGVGASRV-RDLFENAKKEAPAIVFIDEIDAIGKSRA------AGAMMGGNDERE 294

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           +   + L + +  D +    +   +++            G  +   L  K    GR   +
Sbjct: 295 QTLNQLLAEMDGFDSDKSPVIVLAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRVDIL 354

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           ++  ++        +    ++MD + R +  +        ++E   +  R S   I    
Sbjct: 355 KVHSKE-------VKLANNVNMDDIGRLTAGLAGADLANIINEAALLAGRASKEYIEQQD 407

Query: 269 --EGVQRDLLPLVEGS-SVSTKYGSINT 293
             E V+R +  L + S  ++ K   I T
Sbjct: 408 LIEAVERAIAGLEKKSRRINPKEKKIVT 435


>gi|78187896|ref|YP_375939.1| ATPase [Chlorobium luteolum DSM 273]
 gi|78167798|gb|ABB24896.1| ATPase [Chlorobium luteolum DSM 273]
          Length = 441

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I SEL   +IGQ +A RAV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IESELHERVIGQDEAVRAVSEAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDEDAMIRIDMSEYMESHTVSRLV 220


>gi|254977185|ref|ZP_05273657.1| cell division protein [Clostridium difficile QCD-66c26]
 gi|255094514|ref|ZP_05323992.1| cell division protein [Clostridium difficile CIP 107932]
 gi|255102771|ref|ZP_05331748.1| cell division protein [Clostridium difficile QCD-63q42]
 gi|255308592|ref|ZP_05352763.1| cell division protein [Clostridium difficile ATCC 43255]
 gi|255316266|ref|ZP_05357849.1| cell division protein [Clostridium difficile QCD-76w55]
 gi|255518927|ref|ZP_05386603.1| cell division protein [Clostridium difficile QCD-97b34]
 gi|255652106|ref|ZP_05399008.1| cell division protein [Clostridium difficile QCD-37x79]
 gi|255657509|ref|ZP_05402918.1| cell division protein [Clostridium difficile QCD-23m63]
 gi|306521840|ref|ZP_07408187.1| cell division protein [Clostridium difficile QCD-32g58]
          Length = 656

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     V   L+N  +  +L A +     PK +L+VGP G GKT +SR +A
Sbjct: 163 KDVAGLDEEKEDLQEVVDFLKNPKKYIELGARI-----PKGMLMVGPPGTGKTYLSRAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|110598266|ref|ZP_01386541.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
 gi|110340074|gb|EAT58574.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM
           13031]
          Length = 701

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +   L   L     PK +LLVGP
Sbjct: 183 LYENLDEHTRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTTLGGKL-----PKGVLLVGP 237

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 238 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDE 296

Query: 119 RDEV 122
            D V
Sbjct: 297 IDAV 300


>gi|295677138|ref|YP_003605662.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002]
 gi|295436981|gb|ADG16151.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002]
          Length = 629

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
 gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
          Length = 768

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 222 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 254


>gi|119358442|ref|YP_913086.1| FtsH-2 peptidase [Chlorobium phaeobacteroides DSM 266]
 gi|119355791|gb|ABL66662.1| membrane protease FtsH catalytic subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 694

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +  +L   L     PK +LLVGP
Sbjct: 180 LYENLDEHTRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTKLGGKL-----PKGVLLVGP 234

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 235 PGTGKTLLAKAVAGEADVPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDE 293

Query: 119 RDEV 122
            D V
Sbjct: 294 IDAV 297


>gi|320583258|gb|EFW97473.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA
           protease [Pichia angusta DL-1]
          Length = 715

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 102/270 (37%), Gaps = 36/270 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+   + ++L A +     PK  +L GP G GKT +++  A
Sbjct: 245 KDVAGCDEAKEEIMEFVTFLKEPKKYEKLGAKI-----PKGAILSGPPGTGKTLLAKATA 299

Query: 75  RLAGAPFIKVEVTKFTEIGYVG------RNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
             AG PF+ V  ++F E+ YVG      R++    R L    I +       + RE   +
Sbjct: 300 GEAGVPFLSVSGSEFVEM-YVGVGASRVRDLFSTARKLAPCIIFVDEIDAIGKSRESGPM 358

Query: 129 NAEER-------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTS 173
            A +        +L  + G   T        +N  ++  K L      D+ I I+  D  
Sbjct: 359 GANDEKEATLNQLLVEMDGFEDTDHIVVLAGTNRADILDKALTRPGRFDRHISIDRPDIE 418

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD--RL 227
              + + +          +++ F+  + +         +     +      R+++D  +L
Sbjct: 419 GRKAIYKVHLKPLKLEHPVTDEFAGRLAALTPGFSGADISNCCNEAALIAAREDADVVKL 478

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           +  +      I  +E    V   E  K VA
Sbjct: 479 VHFEKAIERVIAGLERKSRVLSPEEKKTVA 508


>gi|293393159|ref|ZP_06637474.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
 gi|291424305|gb|EFE97519.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
          Length = 643

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V+  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|253576848|ref|ZP_04854173.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843715|gb|EES71738.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 709

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSRARLYNEEKKKVTFEDVAGADEEKQELVEVVEFLKDPRKFSAVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|254527134|ref|ZP_05139186.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538558|gb|EEE41011.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 620

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +   D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKRPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|254252701|ref|ZP_04946019.1| Peptidase M41 [Burkholderia dolosa AUO158]
 gi|124895310|gb|EAY69190.1| Peptidase M41 [Burkholderia dolosa AUO158]
          Length = 628

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 151 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 206 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 241


>gi|157825193|ref|YP_001492913.1| cell division protein ftsH [Rickettsia akari str. Hartford]
 gi|157799151|gb|ABV74405.1| cell division protein ftsH [Rickettsia akari str. Hartford]
          Length = 637

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|291546276|emb|CBL19384.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5]
          Length = 621

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK     +   L N  + +++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 171 DVAGEDEAKELLTEIVDFLHNPEKYREIGASM-----PKGALLVGPPGTGKTLLAKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 226 EAEVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 259


>gi|190348983|gb|EDK41546.2| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 978

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  V   +    +  Q P         +P+  +L GP G GKT I++  A 
Sbjct: 507 KDVAGMSEAKEEVVEFV----KFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLIAKATAG 562

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 563 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 595


>gi|146413306|ref|XP_001482624.1| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 978

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  V   +    +  Q P         +P+  +L GP G GKT I++  A 
Sbjct: 507 KDVAGMSEAKEEVVEFV----KFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLIAKATAG 562

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 563 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 595


>gi|119470166|ref|ZP_01612932.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Alteromonadales bacterium TW-7]
 gi|119446587|gb|EAW27861.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Alteromonadales bacterium TW-7]
          Length = 753

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + I   L   + GQ  +  A+  A+     R        +E    + L  GPTGVGKT
Sbjct: 450 TLKNIDRNLKMLVFGQDQSIDALTSAI-----RLSRSGLTSEEKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++++LA+  G  FI+ +++++ E            GYVG     +   L +  I     
Sbjct: 505 EVTKQLAKCMGVEFIRFDMSEYVERHAISRLIGAPPGYVGFEQGGL---LTEAVIKNPHA 561

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 562 VVLLDEIEKAHPDIYNILLQVMDHGTLTDNN 592


>gi|126701185|ref|YP_001090082.1| cell division protein [Clostridium difficile 630]
 gi|260685079|ref|YP_003216364.1| cell division protein [Clostridium difficile CD196]
 gi|260688737|ref|YP_003219871.1| cell division protein [Clostridium difficile R20291]
 gi|296452819|ref|ZP_06894506.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296879929|ref|ZP_06903901.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
 gi|115252622|emb|CAJ70465.1| Cell division protease FtsH2 [Clostridium difficile]
 gi|260211242|emb|CBA66769.1| cell division protein [Clostridium difficile CD196]
 gi|260214754|emb|CBE07450.1| cell division protein [Clostridium difficile R20291]
 gi|296258367|gb|EFH05275.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08]
 gi|296429043|gb|EFH14918.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07]
          Length = 664

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     V   L+N  +  +L A +     PK +L+VGP G GKT +SR +A
Sbjct: 171 KDVAGLDEEKEDLQEVVDFLKNPKKYIELGARI-----PKGMLMVGPPGTGKTYLSRAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|50736531|ref|XP_419121.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 806

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYEDLGAKI-PKGAILTGPPGT 353

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 354 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 412

Query: 122 VREQ 125
           V  +
Sbjct: 413 VGRK 416


>gi|52425019|ref|YP_088156.1| HflB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307071|gb|AAU37571.1| HflB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 634

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 143 LTKEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPGKFQKLGGKI-----PKGILMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT I++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 197 TGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 244


>gi|295106550|emb|CBL04093.1| membrane protease FtsH catalytic subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 781

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 1   MKLTFNFSPREIVSELD---RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54
           M      + + I    D     + G  +A      +   L N  + Q + A +     P+
Sbjct: 200 MSFGKAKTKKSIEERPDVKFSDVAGVDEAVEEMQEIKDFLANPAKYQSMGAKI-----PR 254

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 255 GCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFQQA 308


>gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
 gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
          Length = 555

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 3   LTFNFSPREIVSELD-RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           L  N  P  I S L    + G  +AK   + +   L++  + Q     L     PK +LL
Sbjct: 143 LLHNIKP--ITSHLGFEDVAGITEAKEELKEIVDYLKSPKKYQDFGVKL-----PKGVLL 195

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
           VGP GVGKT I++ LA  A  PF       F +I YVG     V  +       A  I+ 
Sbjct: 196 VGPPGVGKTLIAKALAGEAKVPFYYQSGASFVQI-YVGMGAKRVHDLFTKAKLNAPAIIF 254

Query: 116 ESRRDEV-REQASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEI 160
               D V + +  +  EER      +L  + G   ++        N  E   + L     
Sbjct: 255 IDEIDAVGKARGGMRNEERETTLNQLLTEMDGFEDSNGIIVIGATNNIESMDEALLRSGR 314

Query: 161 SDKEIDIEVADTSSDISNF 179
            D+ I IE+ +    I   
Sbjct: 315 FDRRIFIELPNLQERIKIL 333


>gi|270003255|gb|EEZ99702.1| hypothetical protein TcasGA2_TC002463 [Tribolium castaneum]
          Length = 781

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 27/247 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 297 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 354

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +         
Sbjct: 355 NVPFITVSGSEFLEM-FVGVGPSRVRDLFSMARKHAPCILFIDEIDAVGRKRGGRSFGGH 413

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 414 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRIDILDKALLRPGRFDRQIFVPAPDIKGRA 473

Query: 177 SNFDIPGGASVGILNLSELFSKV--MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           S F +  G     L+ SEL  K+  +  G       +V      +   + +  I+M    
Sbjct: 474 SIFKVHLGPLKTNLDKSELARKMAALTPGFTGADIANVCNEAALIAARDLNESINMKNF- 532

Query: 235 RDSIQMV 241
             +I+ V
Sbjct: 533 EQAIERV 539


>gi|158286555|ref|XP_308807.4| AGAP006949-PA [Anopheles gambiae str. PEST]
 gi|157020524|gb|EAA04719.4| AGAP006949-PA [Anopheles gambiae str. PEST]
          Length = 821

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 330 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 387

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 388 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKNAPCILFIDEIDAVGRKRGGKSFGGH 446

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 447 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALLRPGRFDRQIYVPAPDIKGRA 506

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  G     L+ ++L  K+
Sbjct: 507 SIFKVHLGPLKTDLDKTDLARKM 529


>gi|124003041|ref|ZP_01687892.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
 gi|123991691|gb|EAY31099.1| respiratory chain complexes assembly protein RCA1 [Microscilla
           marina ATCC 23134]
          Length = 696

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 49/248 (19%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + +   L++  +   L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 208 DVAGLEEAKEEVKEIVDFLKHPTKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVAG 262

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL   A            +E+A        +
Sbjct: 263 EAGVPFFSLSGSDFVEM-FVGVGAARV-RDLFKQA------------KEKAPCIVFIDEI 308

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+      S  R        + E +   + +E+   S+D     +         N  ++
Sbjct: 309 DAI----GRSRGRGQMPGSNDERENTLNSLLVEMDGFSTDSGVIIL------AATNRPDV 358

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-- 253
               +    +   ++S+ K                D + R++I  V    +   D+ D  
Sbjct: 359 LDSALMRPGRFDRQVSIDK---------------PDIIGREAIFKVHLNPLKLSDDVDSK 403

Query: 254 KIVARDSG 261
           K+ A+  G
Sbjct: 404 KLAAQTPG 411


>gi|220904981|ref|YP_002480293.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869280|gb|ACL49615.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 676

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A  +    N  +  +L   +     PK +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGVDEAKDELAEVVEFLSNPKKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 210 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAV 258


>gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
 gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
          Length = 628

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 32/186 (17%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK A+      L +  R  ++ A     ++PK +LLVGP G GKT +++ +A 
Sbjct: 164 DVAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQASI 128
            A  PF  +  ++F E+ +VG      +RDL   A       + I       + R+ A I
Sbjct: 219 EAKVPFFSMSGSEFVEM-FVGLGA-SKVRDLFKQAADKAPCIVFIDEIDAIGKRRDTAGI 276

Query: 129 NAEER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +        +L+ + G    S        N  E+    L      D++I +E+ D  
Sbjct: 277 SGNDEREQTLNQLLNEMDGFDGNSGVVILAATNRPEILDPALTRPGRFDRQIPVELPDLQ 336

Query: 174 SDISNF 179
             I   
Sbjct: 337 GRIDIL 342


>gi|227874332|ref|ZP_03992517.1| M41 family endopeptidase FtsH [Oribacterium sinus F0268]
 gi|227839820|gb|EEJ50265.1| M41 family endopeptidase FtsH [Oribacterium sinus F0268]
          Length = 755

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++   +    N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 283 KDVAGEDEAKESLVEIVDFLHNPTKYTSIGAKL-----PKGALLVGPPGTGKTLLAKAVA 337

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             A  PF  +  + F E+ +VG    ++ RDL   A 
Sbjct: 338 GEANVPFYSLSGSDFVEM-FVGVGASRV-RDLFRQAN 372


>gi|157273412|gb|ABV27311.1| cell division protein FtsH [Candidatus Chloracidobacterium
           thermophilum]
          Length = 618

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + N  +  Q    L   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKAELEEVV-NFLKAPQEYGRLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  ++F E+ +VG    ++ RDL + A               A I  +E  LDAL
Sbjct: 216 VPFFSISGSEFIEM-FVGVGAARV-RDLFEQA----------RAHAPAIIFIDE--LDAL 261

Query: 139 -------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                            +   + L + +  D  + + +   ++     D P     G  +
Sbjct: 262 GRARGAGGPLVGHDEREQTLNQLLTEMDGFDTSVGLIILAATNRPEILD-PALLRAGRFD 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQK 214
              L  +    GR   +++  +K
Sbjct: 321 RQVLVDRPDKKGRLAILKVHTKK 343


>gi|85712946|ref|ZP_01043986.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
 gi|85693252|gb|EAQ31210.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
          Length = 641

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 37/255 (14%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK     +   L++  + Q+L   +     PK +L+VGP G GKT +++ ++
Sbjct: 155 RDVAGCDEAKEEVTELVDYLKDPSKFQRLGGKI-----PKGVLMVGPPGTGKTLLAKAIS 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  +       A  I+     D V  Q      
Sbjct: 210 GEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQ------ 262

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
            R      G      T      ++   E ++  I I     +++  +   P     G  +
Sbjct: 263 -RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI----AATNRPDVLDPALLRPGRFD 317

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMV 241
              +    +   R ++  + V      L  D    LI          D+  +  ++    
Sbjct: 318 RQVVVG--LPDVRGREQIIKVHMRKVPLGDDVRADLIARGTPGFSGADLANLVNEAALFA 375

Query: 242 E--NYGIVFLDEFDK 254
              N  +V ++EFDK
Sbjct: 376 ARGNKRVVSMEEFDK 390


>gi|83943922|ref|ZP_00956379.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36]
 gi|83845169|gb|EAP83049.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36]
          Length = 638

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 154 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|319407717|emb|CBI81365.1| cell division protein FtsH [Bartonella sp. 1-1C]
          Length = 696

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 628

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 32/186 (17%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK A+      L +  R  ++ A     ++PK +LLVGP G GKT +++ +A 
Sbjct: 164 DVAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQASI 128
            A  PF  +  ++F E+ +VG      +RDL   A       + I       + R+ A I
Sbjct: 219 EAKVPFFSMSGSEFVEM-FVGLGA-SKVRDLFKQAAEKAPCIVFIDEIDAIGKRRDTAGI 276

Query: 129 NAEER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +        +L+ + G +  S        N  E+    L      D++I +E+ D  
Sbjct: 277 SGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPALTRPGRFDRQIPVELPDLQ 336

Query: 174 SDISNF 179
             I   
Sbjct: 337 GRIDIL 342


>gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 632

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 177 DDVAGIEEAKEELQEVVTFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 234

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 235 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAV 281


>gi|33152553|ref|NP_873906.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
 gi|33148777|gb|AAP96295.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
          Length = 639

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +P ++ +     + G  +AK  V+     L    + Q+L   +     PK IL+VGP G
Sbjct: 143 LTPEQVKTRF-SDVAGCDEAKEEVSEVVDFLTEPSKFQKLGGRI-----PKGILMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 197 TGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFDQAKKN 244


>gi|37521486|ref|NP_924863.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35212483|dbj|BAC89858.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 159 DVAGVEEAKLELQEVVDFLKNSERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|120556298|ref|YP_960649.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326147|gb|ABM20462.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 624

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N     +L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGVDEAKAELVEIGDFLKNPQEYGRLGARI-----PKGVLLVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    ++ RDL + A            R QA        L
Sbjct: 213 EAAVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RAQAPAIIFIDEL 258

Query: 136 DAL-------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           DAL                 +   + L + +  D  + + +   ++     D       G
Sbjct: 259 DALGRARGAGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILD-QALLRAG 317

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQK 214
             +   L  +   +GR + +++ V+K
Sbjct: 318 RFDRQVLVDRPDKTGRLEILKVHVKK 343


>gi|317153521|ref|YP_004121569.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943772|gb|ADU62823.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 776

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   + GQ +A RA+A ++    +R +  A +R    P    LL GPTGVGKT ++
Sbjct: 458 LEDDLKSVVFGQDEAVRALARSI----KRSR--AGMRQSGRPVGCFLLTGPTGVGKTELA 511

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           R+LA++ G  F++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 512 RQLAKVLGISFLRYDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTEGVRKKPHC 565


>gi|160937960|ref|ZP_02085318.1| hypothetical protein CLOBOL_02854 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439186|gb|EDP16940.1| hypothetical protein CLOBOL_02854 [Clostridium bolteae ATCC
           BAA-613]
          Length = 717

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 171 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 GEAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFKNA 259


>gi|297724619|ref|NP_001174673.1| Os06g0229066 [Oryza sativa Japonica Group]
 gi|255676855|dbj|BAH93401.1| Os06g0229066 [Oryza sativa Japonica Group]
          Length = 486

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K  F   P+  V+     + G  +AK+    +   L+   +   + A       PK +LL
Sbjct: 202 KAKFQMEPKTGVTF--DDVAGVDEAKQDFQEIVQFLKFPEKFTAVGA-----RTPKGVLL 254

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 255 VGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFDRA 304


>gi|148826966|ref|YP_001291719.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
 gi|148718208|gb|ABQ99335.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|116199775|ref|XP_001225699.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51]
 gi|88179322|gb|EAQ86790.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51]
          Length = 745

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LRN  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 250 DVHGCDEAKDELQELVDFLRNPEKFSNLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 304

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L + A
Sbjct: 305 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNTA 337


>gi|302387305|ref|YP_003823127.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302197933|gb|ADL05504.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 660

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 172 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 227 GEAHVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 260


>gi|78065910|ref|YP_368679.1| FtsH peptidase [Burkholderia sp. 383]
 gi|77966655|gb|ABB08035.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383]
          Length = 632

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|114051125|ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus]
 gi|118572819|sp|Q2KJI7|AFG32_BOVIN RecName: Full=AFG3-like protein 2
 gi|86820707|gb|AAI05323.1| AFG3 ATPase family gene 3-like 2 (yeast) [Bos taurus]
 gi|296473687|gb|DAA15802.1| AFG3-like protein 2 [Bos taurus]
          Length = 805

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 353

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 354 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 412

Query: 122 VREQ 125
           V  +
Sbjct: 413 VGRK 416


>gi|83954495|ref|ZP_00963206.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1]
 gi|83840779|gb|EAP79950.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +  +L   +     PK  LL GP G GKT ++R +A
Sbjct: 151 DDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKI-----PKGALLEGPPGTGKTLLARAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 206 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 255


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 30/187 (16%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ ++  +   +N  +   L A L     PK +LLVGP G GKT ++R +A
Sbjct: 281 NDVKGVAEAKQELSDIVEFLKNPEKFSALGAKL-----PKGVLLVGPPGTGKTLLARAVA 335

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             AG PF      +F EI  VG+   ++ RDL       A  ++     D V  + + +A
Sbjct: 336 GEAGVPFFHAAGPEFEEI-LVGQGARRM-RDLFKAAKEKAPAVIFIDEIDSVGAKRTNSA 393

Query: 131 EE--------RILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G             N R+   K L      D E+ +++ D SS
Sbjct: 394 LHPYANQTVNQLLTEMDGFLQNEGVIVLGATNRRDDLDKALMRPGRFDVEVVVDIPDYSS 453

Query: 175 DISNFDI 181
               FD+
Sbjct: 454 RKEIFDL 460


>gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog
           [Acyrthosiphon pisum]
          Length = 710

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 98/290 (33%), Gaps = 40/290 (13%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   R +   L++  +   L   L     PK +LLVGP G GKT ++R +A
Sbjct: 274 NDVKGVDEAKQELRDIVEFLKHPSKFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVA 328

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQASIN- 129
             AG PF     ++F EI  VG+   +I RDL   A      ++     D V  + + + 
Sbjct: 329 GEAGVPFFHAAGSEFDEI-LVGQGARRI-RDLFKAAKEKSPCVIFIDEIDSVGAKRTNSV 386

Query: 130 ----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDKEIDIEVADTSSDISN 178
               A + I   L         + +        R+ L    +     DIEV     D+  
Sbjct: 387 LHPYANQTINQLLTEMDGFHQNQNIIVLGATNRREDLDRALLRPGRFDIEV-----DVPL 441

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            D  G   +  L L ++ SK +      +               + + +++   V   S 
Sbjct: 442 PDYAGRKQILDLYLKKILSKDIDVDLLARGTSGFTGA-------DIENMVNQAAVKAASD 494

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
                         DKI+            E     +    EG      Y
Sbjct: 495 GATTVSMKYLEISRDKILMGPEKKSKIPDEEA--NTITAYHEGGHAIVAY 542


>gi|311695965|gb|ADP98838.1| membrane protein containing peptidase M41, FtsH / ATPase, AAA-type,
           core [marine bacterium HP15]
          Length = 644

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 154 DVAGVDEAKEDVKELVDFLRDPSKFQRLGGSI-----PKGVLMVGQPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 209 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 244


>gi|304413877|ref|ZP_07395294.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola
           LSR1]
 gi|304283597|gb|EFL91992.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola
           LSR1]
          Length = 638

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R           +PK +L+VGP G GKT +++ +A  A 
Sbjct: 156 DVAGCDEAKEEVSELVE--YLRDPGRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 213

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 214 VPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 243


>gi|229844056|ref|ZP_04464197.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
 gi|229813050|gb|EEP48738.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|170697952|ref|ZP_02889035.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
 gi|170137118|gb|EDT05363.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
          Length = 631

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|169627637|ref|YP_001701286.1| cell division protein FtsH-like protein [Mycobacterium abscessus
           ATCC 19977]
 gi|169239604|emb|CAM60632.1| Cell division protein FtsH homolog [Mycobacterium abscessus]
          Length = 750

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 165 DVAGVDEAVEELYEIKDFLQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|319897096|ref|YP_004135291.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
 gi|317432600|emb|CBY80961.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 671

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK     +   L+N  R  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 189 KDVAGQAGAKQEIEEIVEFLKNPSRYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 243

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 244 GEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFRQA 277


>gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
 gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC
           35310]
          Length = 677

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 200 KDVAGQAGAKQEVQEIVDFLKNPQKYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 255 GEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFRQA 288


>gi|270157541|ref|ZP_06186198.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
 gi|269989566|gb|EEZ95820.1| cell division protease FtsH-like protein [Legionella longbeachae
           D-4968]
          Length = 601

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK     V   L+N   + R           +PK +LLVGP G GKT ++R 
Sbjct: 158 QDVAGVDEAKTELMEVVEFLKNPQHYTRIGA-------HIPKGVLLVGPPGTGKTLLARA 210

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 211 VAGEAGVPFFSINGSEFVEM-FVGVGAARV-RDLFIHA 246


>gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 616

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 106/294 (36%), Gaps = 45/294 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K   + +   L+N  R Q +        +PK ILLVGP G GKT ++R +A
Sbjct: 174 EDVAGMENSKQELKEMVDYLKNPKRFQDIGGK-----VPKGILLVGPPGTGKTLLARAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG  F  +  ++F E+ +VG    ++ RDL   A          +      ++A  R 
Sbjct: 229 GEAGVAFFSISASQFIEM-FVGVGASRV-RDLFSNAKKAAPSIVFID-----ELDAVGRS 281

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
             A  G        +   + L + +  D   ++ V   ++     D P     G  +   
Sbjct: 282 RGAGFGGGHDER-EQTLNQLLSEMDGFDPHEEVIVIAATNRPDVLD-PALLRPGRFDRHV 339

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI-----------DMDT-VHRDSIQMVE 242
           +  +     R++ +++         +  + D  I           D++  ++  +IQ   
Sbjct: 340 VIDRPDLRDREQILKVH---ARKIRLDPQVDLSIIARGTPGMTGADLENLINEAAIQAAR 396

Query: 243 NYGIVF--------LDEF-----DKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
                         LD+       KIV  D    I    E     +  L+ G+ 
Sbjct: 397 QNSKTVSMDDLERALDKILMGGERKIVISDHEKNITAYHEAGHTLVAKLLPGTD 450


>gi|115351227|ref|YP_773066.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD]
 gi|172060241|ref|YP_001807893.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|115281215|gb|ABI86732.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria
           AMMD]
 gi|171992758|gb|ACB63677.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 631

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|116689319|ref|YP_834942.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia
           HI2424]
 gi|170732618|ref|YP_001764565.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
 gi|116647408|gb|ABK08049.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           HI2424]
 gi|169815860|gb|ACA90443.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
          Length = 631

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
 gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS
           5C-B1]
          Length = 673

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L+N  R   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 200 KDVAGQAGAKQEVQEIVDFLKNPHRYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 255 GEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFRQA 288


>gi|224140275|ref|XP_002323508.1| predicted protein [Populus trichocarpa]
 gi|222868138|gb|EEF05269.1| predicted protein [Populus trichocarpa]
          Length = 794

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 310 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 364

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +  PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 365 GESDVPFLSMSGSDFMEM-FVGVGPSRVRSLFQEARQCAPSIIFIDEVDAI 414


>gi|206559644|ref|YP_002230405.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
 gi|198035682|emb|CAR51569.1| FtsH endopeptidase [Burkholderia cenocepacia J2315]
          Length = 632

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|163869122|ref|YP_001610361.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
 gi|161018808|emb|CAK02366.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
          Length = 722

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 KDVAGVEEAKQDLQEIVEFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|145632765|ref|ZP_01788498.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
 gi|144986421|gb|EDJ92987.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
          Length = 638

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 258


>gi|49246439|gb|AAT58351.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 154

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 22  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 79

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 80  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 126


>gi|329123416|ref|ZP_08251980.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
 gi|327470998|gb|EGF16453.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
          Length = 638

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 258


>gi|301170081|emb|CBW29685.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae 10810]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|171318231|ref|ZP_02907394.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
 gi|171096575|gb|EDT41469.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
          Length = 631

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 245


>gi|37522218|ref|NP_925595.1| cell division protein FtsH-like protein [Gloeobacter violaceus PCC
           7421]
 gi|35213218|dbj|BAC90590.1| glr2649 [Gloeobacter violaceus PCC 7421]
          Length = 785

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%)

Query: 20  IIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           +IG ++AK  V   +      +R+RR           +P+  L VGP G GKT +++ +A
Sbjct: 338 VIGCEEAKGEVQEFIDFLRSPDRYRRIGA-------KVPRGFLFVGPPGTGKTLLAKAIA 390

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
             AG PF  +  + FTE+ +VG    ++ +       +       DE+   A+    +
Sbjct: 391 NEAGVPFYALSGSDFTEV-WVGLGASRVRQVYRQARKHKAAIVFIDEIDALAARRGLD 447



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 10/150 (6%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I+G ++AK+ +   + +  +R +    +  E  P+ +LLVGP G GKT I+R +A  AG
Sbjct: 76  DIVGLEEAKQELEQLV-DVLKRPESYRVVGAE-PPRGVLLVGPPGTGKTMIARAIANEAG 133

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDA 137
            PF  +    F  + ++G   ++I R +   A    R     DE+   A           
Sbjct: 134 VPFYSLAAADFANM-FLGVGSQRI-RQIYRTARRHPRAIVFIDEIEVLAKARG-----TG 186

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDI 167
           L      SNT   F  +L    I+   I I
Sbjct: 187 LGTFEGDSNTLNAFLNELDGFAINPGVITI 216


>gi|39936210|ref|NP_948486.1| endopeptidase Clp ATP-binding subunit A [Rhodopseudomonas palustris
           CGA009]
 gi|192291926|ref|YP_001992531.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris TIE-1]
 gi|39650065|emb|CAE28588.1| endopeptidase Clp: ATP-binding chain A [Rhodopseudomonas palustris
           CGA009]
 gi|192285675|gb|ACF02056.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris TIE-1]
          Length = 794

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  A++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRVVFGQDKAIEALSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLASTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|107022372|ref|YP_620699.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU
           1054]
 gi|254245759|ref|ZP_04939080.1| Peptidase M41 [Burkholderia cenocepacia PC184]
 gi|105892561|gb|ABF75726.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           AU 1054]
 gi|124870535|gb|EAY62251.1| Peptidase M41 [Burkholderia cenocepacia PC184]
          Length = 627

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 151 DVAGCDEAKEEVSELVDFLRDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 206 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 241


>gi|68250004|ref|YP_249116.1| cell division protein FtsH-like protein [Haemophilus influenzae
           86-028NP]
 gi|145630773|ref|ZP_01786551.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145634956|ref|ZP_01790663.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145638915|ref|ZP_01794523.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|68058203|gb|AAX88456.1| cell division protein FtsH homolog 1 [Haemophilus influenzae
           86-028NP]
 gi|144983655|gb|EDJ91115.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145267822|gb|EDK07819.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145271887|gb|EDK11796.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|309750888|gb|ADO80872.1| ATP-dependent protease FtsH [Haemophilus influenzae R2866]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|319776274|ref|YP_004138762.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
 gi|317450865|emb|CBY87089.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 617

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTA 68
           +IVS     + G   AK  +   +       Q  +D       +P+ +LLVGP G GKT 
Sbjct: 324 QIVSF--DDVEGVDAAKVELMEIV----SCLQGASDYNKLGAKLPRGVLLVGPPGTGKTL 377

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           ++R +A  AG PF  V  ++F E+ +VGR   ++ RDL +VA   
Sbjct: 378 LARAVAGEAGVPFFSVSASEFVEL-FVGRGAARV-RDLFNVARKC 420


>gi|209522887|ref|ZP_03271445.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209496936|gb|EDZ97233.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 651

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 16  LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   + G ++AK  +      L++  +   + A +     P+ +LLVGP G GKT +++ 
Sbjct: 189 LFDDVAGIEEAKEELQEVVTFLKSPEKFTAIGAKI-----PRGVLLVGPPGTGKTLLAKA 243

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  ++F E+ +VG     V  + +   D +  ++     D V
Sbjct: 244 VAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNSPCLIFIDEIDAV 295


>gi|72384010|ref|YP_293364.1| FtsH-2 peptidase [Ralstonia eutropha JMP134]
 gi|72123353|gb|AAZ65507.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Ralstonia
           eutropha JMP134]
          Length = 646

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +A  + N  +  Q    L  ++ PK +LL+G  G GKT +++ +A  AG
Sbjct: 173 DVAGIDEAKEELAEIV-NFLKDPQRYRRLGGKI-PKGVLLLGAPGTGKTLLAKAVAGEAG 230

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 231 VPFFSMSGSEFVEM-FVGVGAARV-RDLFNQA 260


>gi|16273245|ref|NP_439486.1| cell division protein [Haemophilus influenzae Rd KW20]
 gi|2492507|sp|P71377|FTSH_HAEIN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1574793|gb|AAC22979.1| cell division protein (ftsH) [Haemophilus influenzae Rd KW20]
          Length = 635

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 152 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 207 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 255


>gi|325298616|ref|YP_004258533.1| ATP-dependent metalloprotease FtsH [Bacteroides salanitronis DSM
           18170]
 gi|324318169|gb|ADY36060.1| ATP-dependent metalloprotease FtsH [Bacteroides salanitronis DSM
           18170]
          Length = 675

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ  AK+ V      L++  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 200 KDVAGQAAAKQEVQEIVDFLKDPEKYTKLGGKI-----PKGALLIGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  + R   + A  I+     D V
Sbjct: 255 GEADVPFFSISGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAV 304


>gi|257461436|ref|ZP_05626532.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
 gi|257441159|gb|EEV16306.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268]
          Length = 649

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 157/427 (36%), Gaps = 70/427 (16%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F
Sbjct: 194 IVDFLKNPERYISLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSF 248

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-------T 142
            E+ +VG    ++ RDL D A          + +  A +  +E  +DA+           
Sbjct: 249 IEM-FVGVGASRV-RDLFDNA----------KKQAPAIVFIDE--IDAIGKSRTAGGIGG 294

Query: 143 ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
                 +   + L + +    E    +   +++            G  +   L  +    
Sbjct: 295 GNDEREQTLNQLLAEMDGFGSESSPVIVLAATNRPETLDAALLRPGRFDRQVLVDRPDFD 354

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           GR   +++ ++         +  R ID++ + R ++          ++E           
Sbjct: 355 GRMAILKVHMRD-------VKFARDIDIEEIARLTVGFAGADLANIINE------AALLA 401

Query: 263 GIGVSREGVQRDLLPLVE--GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
           G     E  Q+DLL  +E  G  ++ K   +     +     A+H S  A +    +G  
Sbjct: 402 GREAKAEVEQKDLLEAIERVGIGLAKKSRRV---SPIEKRIVAYHESGHALIAELTKGAM 458

Query: 321 PV-RVHLKSLNKSDFRLILTDT-ESNLILQYKELM----------KTEGIIL-DFTEDSI 367
           PV +V +     S     L    E+  + Q  E+             E + L + T+ + 
Sbjct: 459 PVSKVTIVPRGLSAAGYTLNSPFENRYLHQRHEIFAEIDTFLAGRAAEDVFLGEITDGAG 518

Query: 368 DALADVAVNLNSTVGDIG---ARRLQTVMERVLEDISF-----SASDLQEKT-VVIDAEY 418
           + L      L      +G   A  L  V+E+  +  SF     S  D  E T V ID EY
Sbjct: 519 NDLQRATDMLKFMATQVGMTEALGL-AVLEK--QQYSFLNGGQSIKDYSEVTAVKID-EY 574

Query: 419 VRLHIGD 425
           VR  + +
Sbjct: 575 VRKTLDE 581


>gi|284037881|ref|YP_003387811.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
 gi|283817174|gb|ADB39012.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74]
          Length = 676

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L+N  +  +L A +     PK  LL+GP G GKT +++ +A
Sbjct: 198 NDVAGLDEAKEEIKEIVDYLKNPTKFTKLGAKI-----PKGALLIGPPGTGKTLLAKAVA 252

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 253 GEAGVPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDEIDAV 302


>gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
 gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
          Length = 587

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 149 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 203

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 204 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 236


>gi|145629420|ref|ZP_01785218.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
 gi|144978263|gb|EDJ88027.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
          Length = 638

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAV 258


>gi|144897904|emb|CAM74768.1| ATP-dependent Zn proteases [Magnetospirillum gryphiswaldense MSR-1]
          Length = 642

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 157 EDVAGIDEAKQELEEIVEFLKDPQKFQRLGGKI-----PKGCLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 261


>gi|50545783|ref|XP_500430.1| YALI0B02574p [Yarrowia lipolytica]
 gi|49646296|emb|CAG82648.1| YALI0B02574p [Yarrowia lipolytica]
          Length = 763

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + N  +  +    L  ++ P+  +L GP G GKT +++  A  AG
Sbjct: 269 DVAGMDEAKVEIMEFV-NFLKDPKKYEKLGAKI-PRGAILSGPPGTGKTLVAKATAGEAG 326

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 327 VPFLSVSGSEFMEM-FVGVGASRV-RDLFKQA 356


>gi|88797616|ref|ZP_01113205.1| cell division protein FtsH [Reinekea sp. MED297]
 gi|88779788|gb|EAR10974.1| cell division protein FtsH [Reinekea sp. MED297]
          Length = 643

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A
Sbjct: 156 KDVAGVEEAKEDVQELVEFLRDPGKYQRLGGKI-----PRGVLMVGPPGTGKTLLAKAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEARVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 260


>gi|114565669|ref|YP_752823.1| ATP-dependent metalloprotease FtsH [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336604|gb|ABI67452.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 599

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L+N  +  Q+ A +     P+ +LL G  G GKT +++ +A
Sbjct: 157 KDVAGAEEAKEEMQEVVEFLKNPQKFIQIGAKI-----PRGVLLYGAPGTGKTLMAKAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQAKKN 248


>gi|323144909|ref|ZP_08079472.1| cell division protease FtsH [Succinatimonas hippei YIT 12066]
 gi|322415307|gb|EFY06078.1| cell division protease FtsH [Succinatimonas hippei YIT 12066]
          Length = 665

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 153 DVAGCDEAKEDVEELVDFLKDPSKYQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  + F E+ +VG     V  + +     A  I+     D V  +
Sbjct: 208 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFQTAKKNAPCIIFIDEIDAVGRK 259


>gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina]
 gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina]
          Length = 628

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK      + +  +R +    +  ++ PK +LLVGP G GKT +++ +A  +
Sbjct: 173 EDVAGVDEAKEEFEEVV-SFLKRPERFTAVGAKI-PKGVLLVGPPGTGKTLLAKAIAGES 230

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + +  IV     D V
Sbjct: 231 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENSPCIVFIDEIDAV 277


>gi|78187576|ref|YP_375619.1| peptidase M41, FtsH [Chlorobium luteolum DSM 273]
 gi|78167478|gb|ABB24576.1| Peptidase M41, FtsH [Chlorobium luteolum DSM 273]
          Length = 631

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
            +F+ S  ++VSE D     + + G  +A   +      L N  + Q++   +     PK
Sbjct: 160 FSFSKSRAKLVSEFDVKTTFKDVAGVDEAVEELQETVEFLTNPEKFQKIGGKI-----PK 214

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 215 GVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFEQAKKN 271


>gi|301787469|ref|XP_002929150.1| PREDICTED: AFG3-like protein 2-like [Ailuropoda melanoleuca]
          Length = 846

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 336 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 393

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 394 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 452

Query: 122 VREQ 125
           V  +
Sbjct: 453 VGRK 456


>gi|319404753|emb|CBI78355.1| cell division protein FtsH [Bartonella rochalimae ATCC BAA-1498]
          Length = 696

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|194335260|ref|YP_002017054.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307737|gb|ACF42437.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 697

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  +AK  V      L++  +   L   L     PK +LLVGP
Sbjct: 184 LYENLDEHSRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTTLGGKL-----PKGVLLVGP 238

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   + A  I+    
Sbjct: 239 PGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDE 297

Query: 119 RDEV 122
            D V
Sbjct: 298 IDAV 301


>gi|316933621|ref|YP_004108603.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris DX-1]
 gi|315601335|gb|ADU43870.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris DX-1]
          Length = 795

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  A++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRVVFGQDKAIEALSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|228469478|ref|ZP_04054482.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
 gi|228308993|gb|EEK17645.1| cell division protein FtsH [Porphyromonas uenonis 60-3]
          Length = 673

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 37/277 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+N  +  +L   +     PK  LLVGP G GKT  ++ +A
Sbjct: 182 DDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKI-----PKGALLVGPPGTGKTLFAKAVA 236

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQASINA 130
             A  PF  +  + F E+ +VG    ++ RDL   A      I+     D V    S NA
Sbjct: 237 GEAHVPFFSISGSDFVEM-FVGVGASRV-RDLFKQAKEKSPCIIFIDEIDAVGRARSKNA 294

Query: 131 -----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                +ER      +L  + G    S        N  ++  K L      D++I +++ D
Sbjct: 295 GFSSNDERENTLNQLLTEMDGFDGNSGVIILAATNRVDILDKALLRAGRFDRQIYVDLPD 354

Query: 172 TSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM---RDESDRL 227
            +     F +   G  +G     +  S+         I     +         +   ++ 
Sbjct: 355 LNDRKEIFLVHMKGLKLGADVDVDQLSRQTPGFSGADIANVCNEAALIAARHDKQAIEKQ 414

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
             MD V R    + +   I+  DE   I   ++G+  
Sbjct: 415 DFMDAVDRIIGGLEKKNKIITEDERRSIAIHEAGHAT 451


>gi|73962221|ref|XP_547682.2| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Canis familiaris]
          Length = 806

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 353

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 354 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 412

Query: 122 VREQ 125
           V  +
Sbjct: 413 VGRK 416


>gi|15603922|ref|NP_220437.1| cell division protein FTSH (ftsH) [Rickettsia prowazekii str.
           Madrid E]
 gi|6225392|sp|Q9ZEA2|FTSH_RICPR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3860613|emb|CAA14514.1| CELL DIVISION PROTEIN FTSH (ftsH) [Rickettsia prowazekii]
 gi|292571639|gb|ADE29554.1| ATP-dependent metalloprotease FtsH [Rickettsia prowazekii Rp22]
          Length = 637

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|315498281|ref|YP_004087085.1| ATP-dependent clp protease, ATP-binding subunit clpa [Asticcacaulis
           excentricus CB 48]
 gi|315416293|gb|ADU12934.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Asticcacaulis
           excentricus CB 48]
          Length = 769

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R++ ++L R + GQ +A   ++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 460 RDLTNDLQRVVFGQDEAIEQLSAAMK------LARAGLRDANKPIGSYLFSGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++++L++  G   ++ +++++ E            GYVG +   ++ D VD   +
Sbjct: 514 VAKQLSQTLGIELLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVDQTPH 568


>gi|50543570|ref|XP_499951.1| YALI0A10615p [Yarrowia lipolytica]
 gi|49645816|emb|CAG83880.1| YALI0A10615p [Yarrowia lipolytica]
          Length = 800

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   +R   N  + ++L A +     P+  +L GP G GKT I++  A
Sbjct: 326 DDVAGMGEAKEEIMEFVRFLKNPQKFERLGAKI-----PRGAILSGPPGTGKTLIAKATA 380

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF+ V  ++F E+ +VG    ++ RDL   A  +
Sbjct: 381 GEAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFSQARKM 417


>gi|49476134|ref|YP_034175.1| cell division protein ftsH [Bartonella henselae str. Houston-1]
 gi|49238942|emb|CAF28238.1| Cell division protein ftsH [Bartonella henselae str. Houston-1]
          Length = 715

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVEFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|303289655|ref|XP_003064115.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454431|gb|EEH51737.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 613

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R+          +PK +LLVGP G GKT ++R +A  AG
Sbjct: 120 DVKGVDEAKGELVEIVE--YLREPSKFTRLGGKLPKGVLLVGPPGTGKTMLARAVAGEAG 177

Query: 79  APFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
            PF     ++F E+ +VG   R V  + +     A  I+     D V
Sbjct: 178 VPFFYTSGSEFEEM-FVGVGARRVRDLFKAAKQNAPCIIFIDEIDAV 223


>gi|158319483|ref|YP_001511990.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158139682|gb|ABW17994.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 651

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  +      LRN  +   L A +     PK IL+VGP G GKT +++ +A
Sbjct: 164 KDVAGLDEEKEELQEIVDFLRNPKKYMDLGARI-----PKGILMVGPPGTGKTYLTKAVA 218

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|18999411|gb|AAH24282.1| Similar to AFG3 ATPase family gene 3-like 2 (yeast) [Homo sapiens]
          Length = 812

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 310 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 367

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 368 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 426

Query: 122 VREQ 125
           V  +
Sbjct: 427 VGRK 430


>gi|330991883|ref|ZP_08315832.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp.
           SXCC-1]
 gi|329760904|gb|EGG77399.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp.
           SXCC-1]
          Length = 646

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKGELQEIVDFLRDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKAAPCIIFIDEIDAV 260


>gi|299135163|ref|ZP_07028354.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Afipia sp.
           1NLS2]
 gi|298590140|gb|EFI50344.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Afipia sp.
           1NLS2]
          Length = 786

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + + L R + GQ  A  A+A +++              E      L  GPTGVGKT +
Sbjct: 458 RHLETTLKRTVFGQDKAIEALAASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|295103468|emb|CBL01012.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           SL3/3]
          Length = 616

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G+ +AK  +   +         P    +    MPK ILLVGP G GKT +++ +A  
Sbjct: 168 DVAGEDEAKENLQEIV----NYLHDPKQYEEIGASMPKGILLVGPPGTGKTMLAKAVAGE 223

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 224 SNVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 255


>gi|152993642|ref|YP_001359363.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum
           sp. NBC37-1]
 gi|151425503|dbj|BAF73006.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum
           sp. NBC37-1]
          Length = 729

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L  +IIGQ +A   +A A++  +     P          + L VGPTGVGKTA+
Sbjct: 436 KTLEKDLSAHIIGQNEAIEELATAIKRSYAGLNAPN-----RPIGSFLFVGPTGVGKTAL 490

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           + +LA      F +++++++ E            GYVG     ++ +++    + V    
Sbjct: 491 ATQLAETMHVHFERIDMSEYMEAHTISRLVGAPPGYVGYEQGGLLTEMIKKHPHTVL--L 548

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
            DE+ E+A  +    +L  + G   T N 
Sbjct: 549 LDEI-EKAHPDIMNILLQVMDGAKLTDNN 576


>gi|51473298|ref|YP_067055.1| cell division protein FtsH [Rickettsia typhi str. Wilmington]
 gi|81390274|sp|Q68XR9|FTSH_RICTY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|51459610|gb|AAU03573.1| cell division protein FtsH [Rickettsia typhi str. Wilmington]
          Length = 637

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740]
 gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella
           succinogenes]
          Length = 579

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 29/262 (11%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++ K  +      L+N  + Q+    L     PK +LL+GP GVGKT I++ +A
Sbjct: 181 EDVAGIKEVKEELEEIIDFLKNPAKYQKFGTKL-----PKGVLLMGPPGVGKTLIAKAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF     + F +I YVG     V  +       A +I+     D V + +  +  
Sbjct: 236 GEAGVPFFYQSGSSFAQI-YVGMGAKRVRDLFMRAKLSAPSIIFIDEIDAVGKARGGLRN 294

Query: 131 EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G   +S        N  +V  + L      D+ I +E+ D    +
Sbjct: 295 DERETTLNQLLTEMDGFEDSSGVIVIGATNKIDVLDEALLRSGRFDRRIYVELPDFLERV 354

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV-HR 235
              ++        LNL E+ S++        +   V +     +R  S+ +   D +  +
Sbjct: 355 KILEVHLKGKQHELNLEEV-SRLTVGFSGASLASLVNEAALRAIRRRSNAIAHEDILATK 413

Query: 236 DSIQMVENYGIVFLDEFDKIVA 257
           D + + +   + F DE  KI+A
Sbjct: 414 DKVILGKRKRLSFSDEEKKILA 435


>gi|77165372|ref|YP_343897.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|254434916|ref|ZP_05048424.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|76883686|gb|ABA58367.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207091249|gb|EDZ68520.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 629

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 30/199 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P+ ++D    MPK +LL GP G GKT ++R +A 
Sbjct: 174 DDVAGVEEAKEELREIIV----FLRDPSLIQDLGGRMPKGVLLAGPPGTGKTLLARAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    +  RDL + A            R++A        L
Sbjct: 230 EARVPFFNISGSEFIEL-FVGVGAARA-RDLFEQA------------RKKAPCIIFIDEL 275

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+    A + +     +  R+  ++   ++++  D S  +              N +E+
Sbjct: 276 DAIGRTRAGAVSMGGHDE--REQTLNQLLVEMDGFDPSVGVVVM--------AATNRAEI 325

Query: 196 FSKVMGSGRKKKIRMSVQK 214
             K +    +   R+ V K
Sbjct: 326 LDKALLRAGRFDRRVLVDK 344


>gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 665

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     P+ +LL+GP G GKT +++ +A
Sbjct: 211 DDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKI-----PRGVLLIGPPGTGKTLLAKAIA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  +V     D V
Sbjct: 266 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFIDEIDAV 315


>gi|332288653|ref|YP_004419505.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179]
 gi|330431549|gb|AEC16608.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179]
          Length = 638

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G
Sbjct: 144 MTQEQIKTTF-ADVAGCDEAKEEVGEIVDFLRDPSKFQKLGGKI-----PKGILMVGPPG 197

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 198 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 245


>gi|319786409|ref|YP_004145884.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464921|gb|ADV26653.1| ATP-dependent metalloprotease FtsH [Pseudoxanthomonas suwonensis
           11-1]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 167 DVAGCDEAKEEVGELVEFLRDPSKFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 222 EARVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 257


>gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 614

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E        + G ++ K   + +   L+N  R  +L A +     PK +LL GP G G
Sbjct: 150 PDEKRRITFDDVAGYEEVKEELKEIVDYLKNPRRYIELGARI-----PKGVLLYGPPGTG 204

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 205 KTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASRV-RDLFEQA 247


>gi|282896488|ref|ZP_06304508.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281198594|gb|EFA73475.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 645

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L+N  +   L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 175 DVAGVDEAKAELEEIVDFLKNASKYTNLGAKI-----PKGVLLVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 230 EAGVPFFSISGSEFIEL-FVGVGAARV-RDLFEQAKKQ 265


>gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 642

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G Q+AK   + +   L++  R   L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 179 DVAGVQEAKEEVKEIVDFLKHPDRYINLGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 233

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 234 EADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENA 266


>gi|331084309|ref|ZP_08333414.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401844|gb|EGG81421.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 626

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           +TF  S  +I            + G+ +AK  ++  +    N  + +++ A +     PK
Sbjct: 154 MTFGKSNAKIYVNSSTGIKFSDVAGEDEAKELLSEIVDYLHNPDKYKEIGASM-----PK 208

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 209 GALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 263


>gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 16  LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   + G ++AK  +      L++  +   + A +     P+ +LLVGP G GKT +++ 
Sbjct: 166 LFDDVAGIEEAKEELQEVVTFLKSPEKFTAIGAKI-----PRGVLLVGPPGTGKTLLAKA 220

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  ++F E+ +VG     V  + +   D +  ++     D V
Sbjct: 221 VAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNSPCLIFIDEIDAV 272


>gi|290511555|ref|ZP_06550924.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
 gi|289776548|gb|EFD84547.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo]
 gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia
           bovis]
          Length = 658

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + I+G  +AK  +   +    +  + P    D    +PK +LLVGP G GKT +++ +A 
Sbjct: 215 KDIMGIDEAKEELMEVV----KFIKQPKLYHDIGAKIPKGVLLVGPPGTGKTMLAKAVAT 270

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PFI     +F EI +VG+    V  +       A  IV     D +  +
Sbjct: 271 EANIPFIYTSGPEFVEI-FVGQGAQRVRNLFAKARKQAPCIVFIDEIDAIGAK 322


>gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LL+GP G GKT +++ +A 
Sbjct: 173 DDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|320450651|ref|YP_004202747.1| ATPase [Thermus scotoductus SA-01]
 gi|320150820|gb|ADW22198.1| ATPase AAA-2 [Thermus scotoductus SA-01]
          Length = 453

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 20/138 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R +IGQ  A  AV   L    +R+   A L  +  P +++L GPTG GKT +++
Sbjct: 161 LEEALKRRVIGQDHAVEAVVRGL----KRK--AAGLSRKEKPFSVMLAGPTGTGKTELAK 214

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
            LA   G P I+ ++ ++ +            GYVG +       L +      +     
Sbjct: 215 ALADALGRPLIRYDMNQYGQDHTVAALVGSPPGYVGSD---RPGRLYEDLARHPKGVFLF 271

Query: 121 EVREQASINAEERILDAL 138
           +  E+A     + +L  L
Sbjct: 272 DEMEKAHPAVLDPLLQLL 289


>gi|268608651|ref|ZP_06142378.1| ATP-dependent metalloprotease FtsH [Ruminococcus flavefaciens FD-1]
          Length = 667

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L+N  + +++ A      +PK +LL+GP G GKT ++R +A
Sbjct: 167 KDVAGADEEKQELEEIVDFLKNPSKYKEIGAK-----VPKGVLLLGPPGTGKTLLARAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 222 GEAGCPFFPISGSDFVEM-FVGVGASRV-RDLFEQAKKH 258


>gi|269837856|ref|YP_003320084.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943107|sp|D1C4U5|FTSH3_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|269787119|gb|ACZ39262.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 489

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A     LR+  R +++ A +     P+ +LL GP G GKT ++R +A 
Sbjct: 56  DVAGLIEAKEELAEIVTFLRDPERFRRMGARM-----PRGVLLAGPPGTGKTLLARAVAG 110

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ RDL   A               A +  +E  +
Sbjct: 111 EAGVPFFAMSASQFVEV-YVGVGAKRV-RDLFAAARKASP----------AIVFIDE--I 156

Query: 136 DALVGKTATSNTREVFRKKLRD 157
           DA+  +   S + + + + L  
Sbjct: 157 DAIGRRRGDSQSHQEYEQTLNQ 178


>gi|49246427|gb|AAT58345.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 153

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 21  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 78

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 79  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 125


>gi|240172853|ref|ZP_04751512.1| membrane-bound protease [Mycobacterium kansasii ATCC 12478]
          Length = 746

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           K       +++       + G  +A   +      L+N  R Q L A +     P+ +LL
Sbjct: 147 KSRAKMLNKDMPKTTFADVAGVDEAVEELYEIKDFLQNPGRYQALGAKI-----PRGVLL 201

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 202 YGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQA 251


>gi|224083241|ref|XP_002306970.1| predicted protein [Populus trichocarpa]
 gi|222856419|gb|EEE93966.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVG  G GKT ++R +A 
Sbjct: 210 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGSPGTGKTLLARAVAG 264

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 265 EAGVPFFSCAASEFVEM-FVGVGASRV-RDLFEKA 297


>gi|238793016|ref|ZP_04636645.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
 gi|238727616|gb|EEQ19141.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
          Length = 646

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|258511606|ref|YP_003185040.1| Vesicle-fusing ATPase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478332|gb|ACV58651.1| Vesicle-fusing ATPase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 503

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 19/218 (8%)

Query: 22  GQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           GQ+ AKR +  AL   R+R +     +R     K ILL GP G GKT +++  A    + 
Sbjct: 69  GQESAKRELMEALDFLRYRDRIAQLGIR---PIKGILLTGPPGTGKTLMAKAAATYTDSV 125

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE-RILDALV 139
           F+    ++F E+ YVG    ++ RDL   A    R   + E ++ A I  +E  ++    
Sbjct: 126 FLSASGSEFVEM-YVGVGASRV-RDLFRRA----RALAKRENKDSAIIFLDEIDVVGGRR 179

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSK 198
           G+ +     +   + L + +  +      V    +++  +   P     G  +       
Sbjct: 180 GQHSHQEYDQTLNQLLTEMDGMNTSQHPFVLVMAATNRPDMLDPALLRPGRFDRQ--IRV 237

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            +     +   + +Q     L  D     +D++ + R+
Sbjct: 238 DLPDKEGRLHILRIQTKNKPLAPD-----VDLEHIARE 270


>gi|160943001|ref|ZP_02090239.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445695|gb|EDP22698.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii
           M21/2]
          Length = 616

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G+ +AK  +   +         P    +    MPK ILLVGP G GKT +++ +A  
Sbjct: 168 DVAGEDEAKENLQEIV----NYLHDPKQYEEIGASMPKGILLVGPPGTGKTMLAKAVAGE 223

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 224 SNVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 255


>gi|94676658|ref|YP_589061.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219808|gb|ABF13967.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 627

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           V      + G  +AK  V+  +   + R+          +PK IL+VGP G GKT +++ 
Sbjct: 146 VKTTFDDVAGCDEAKEEVSELID--YLREPSRFQKLGGKIPKGILMVGPPGTGKTLLAKA 203

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 204 IAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 239


>gi|51244738|ref|YP_064622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfotalea
           psychrophila LSv54]
 gi|50875775|emb|CAG35615.1| probable ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Desulfotalea psychrophila LSv54]
          Length = 750

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R + + L   + GQ +A +A+  A+    +R +  A L + L P    +  GPTGVGKT 
Sbjct: 455 RHLDNSLRSVVYGQDNAIKALTTAV----KRSR--AGLGNPLSPTGSFVFSGPTGVGKTE 508

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++R+LA+  G  F + +++++ E            GYVG +    + + +    + 
Sbjct: 509 VARQLAKQLGIHFERFDMSEYMEKHAVARLIGAPPGYVGFDQGGQLTEAIRKHPHC 564


>gi|148256655|ref|YP_001241240.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146408828|gb|ABQ37334.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 615

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 30/209 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   R +   L++     +L   +     PK +LLVGP G GKT +++ +A
Sbjct: 159 EDVAGVDEAKDELREIVAFLKDPKSYGRLGGRM-----PKGVLLVGPPGTGKTLLAKAVA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ +VG    ++ RDL + A            R +A        
Sbjct: 214 GEAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RAKAPAIIFIDE 259

Query: 135 LDALVG-------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           LDAL                 +   + L + +  D  + + +   ++     D P     
Sbjct: 260 LDALGRARGMGPFAGGHDEKEQTLNQLLVELDGFDSSVGLVLLAATNRPEILD-PALLRA 318

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCY 216
           G  +   L  +    GR + + + ++K  
Sbjct: 319 GRFDRQVLVDRPDKPGRIQILNVHLKKAK 347


>gi|315274601|ref|ZP_07869471.1| putative cell division protease [Listeria marthii FSL S4-120]
 gi|313615771|gb|EFR89029.1| putative cell division protease [Listeria marthii FSL S4-120]
          Length = 270

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENA 268


>gi|312884010|ref|ZP_07743727.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368468|gb|EFP96003.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 642

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            S  +I +     + G  +AK  VA  +   + R           +P  +L+VGP G GK
Sbjct: 143 MSEEQIKTTF-SDVAGCDEAKEDVAELVE--YLRDPSRFQKLGGKIPTGVLMVGPPGTGK 199

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 200 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 257


>gi|290992029|ref|XP_002678637.1| predicted protein [Naegleria gruberi]
 gi|284092250|gb|EFC45893.1| predicted protein [Naegleria gruberi]
          Length = 537

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 92/267 (34%), Gaps = 42/267 (15%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLV 59
           +P  +  ++      + G  +AK  +   +      + +++           +P+  +L+
Sbjct: 78  TPEAVKQKVKVTFNDVAGMDEAKAEIQEFVSFLKKPDHYKKLGA-------KIPRGAILM 130

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDV------- 109
           GP G GKT +++ +A  +  PF  +  + F E+ +VG     V  + +   +        
Sbjct: 131 GPPGTGKTLLAKAVAGESNVPFYSMSGSDFVEM-FVGVGPARVRNLFKKARETGEAIIFI 189

Query: 110 ----AINIVRESRRDEVREQASINAEERILDALVGKTATSN---------TREVFRKKLR 156
               AI   R +           N   ++L  + G     N           +   + L 
Sbjct: 190 DEIDAIGRPRGNSMYGGGNDERENTLNQLLVEMDGFNENQNVIVLASTNVDVDGLDRALL 249

Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV--MGSGRKKKIRMSVQK 214
                D++I ++  D       F +       + NL E   ++  +  G       +V  
Sbjct: 250 RPGRFDRQITVDKPDQKGREDVFKVHLRKIKKVENLEENIPRLAELTPGFTGADIANVCN 309

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMV 241
                   E  + +DM+ + R +I  V
Sbjct: 310 EGAIFAAREGKKEVDMEDMER-AIDRV 335


>gi|154248456|ref|YP_001419414.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xanthobacter
           autotrophicus Py2]
 gi|154162541|gb|ABS69757.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xanthobacter
           autotrophicus Py2]
          Length = 823

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L R + GQ  A  A+A +++              E    + L  GPTGVGKT +++
Sbjct: 460 LRTTLKRVVYGQDKAIDALAASIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 QLASVLGVQLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQNPHC 567


>gi|51594826|ref|YP_069017.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           32953]
 gi|108806050|ref|YP_649966.1| ATP-dependent metalloprotease [Yersinia pestis Antiqua]
 gi|108813406|ref|YP_649173.1| ATP-dependent metalloprotease [Yersinia pestis Nepal516]
 gi|145600798|ref|YP_001164874.1| ATP-dependent metalloprotease [Yersinia pestis Pestoides F]
 gi|153946925|ref|YP_001402556.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           31758]
 gi|153997279|ref|ZP_02022379.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|186893835|ref|YP_001870947.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis PB1/+]
 gi|218930516|ref|YP_002348391.1| ATP-dependent metalloprotease [Yersinia pestis CO92]
 gi|229839154|ref|ZP_04459313.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896643|ref|ZP_04511810.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|229899718|ref|ZP_04514859.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903880|ref|ZP_04518993.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|51588108|emb|CAH19714.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777054|gb|ABG19573.1| membrane protease FtsH catalytic subunit [Yersinia pestis Nepal516]
 gi|108777963|gb|ABG12021.1| membrane protease FtsH catalytic subunit [Yersinia pestis Antiqua]
 gi|115349127|emb|CAL22090.1| cell division protein [Yersinia pestis CO92]
 gi|145212494|gb|ABP41901.1| membrane protease FtsH catalytic subunit [Yersinia pestis Pestoides
           F]
 gi|149288916|gb|EDM38996.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|152958420|gb|ABS45881.1| ATP-dependent metallopeptidase HflB [Yersinia pseudotuberculosis IP
           31758]
 gi|186696861|gb|ACC87490.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679650|gb|EEO75753.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|229687210|gb|EEO79285.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695520|gb|EEO85567.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700421|gb|EEO88453.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|320013705|gb|ADV97276.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|296104889|ref|YP_003615035.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059348|gb|ADF64086.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|262042737|ref|ZP_06015891.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039962|gb|EEW41079.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|238757570|ref|ZP_04618755.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
 gi|238704332|gb|EEP96864.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
          Length = 646

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|255079944|ref|XP_002503552.1| predicted protein [Micromonas sp. RCC299]
 gi|226518819|gb|ACO64810.1| predicted protein [Micromonas sp. RCC299]
          Length = 886

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 24/195 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  +R +    L     P  +LLVG  G GKT ++R +A  A
Sbjct: 388 NDVAGVDEAKEELQEIV-DILKRPEHYTRLGA-RPPCGVLLVGAPGTGKTLLARAVAGEA 445

Query: 78  GAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV-------REQA-- 126
           G PFI V  ++F E  +G     V  +     + A  IV     D V       R +   
Sbjct: 446 GVPFISVSASEFVELYMGMGAARVRDVFARAREQAPAIVFIDEIDAVAKGRSDGRLRGMG 505

Query: 127 ---SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  L G          A +N  +     L+     D+ + +E  D    
Sbjct: 506 NDEREQTLNQLLTELDGFDDEHLVICLAATNRADTLDSALKRPGRFDRTVSVERPDKQGR 565

Query: 176 ISNFDIPGGASVGIL 190
                +  GA    +
Sbjct: 566 KEILGVHIGARNLPM 580


>gi|206578792|ref|YP_002236410.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288933394|ref|YP_003437453.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
 gi|206567850|gb|ACI09626.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288888123|gb|ADC56441.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
          Length = 647

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|152972102|ref|YP_001337248.1| ATP-dependent metalloprotease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896685|ref|YP_002921430.1| ATP-dependent metalloprotease [Klebsiella pneumoniae NTUH-K2044]
 gi|329997735|ref|ZP_08302903.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
 gi|150956951|gb|ABR78981.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549012|dbj|BAH65363.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328538924|gb|EGF64983.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|255521742|ref|ZP_05388979.1| cell division protein ftsH [Listeria monocytogenes FSL J1-175]
          Length = 400

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|255088145|ref|XP_002505995.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
 gi|226521266|gb|ACO67253.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
          Length = 718

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +  QL A +     PK  LLVGP G GKT +++ +A 
Sbjct: 252 DVAGVDGAKLELQEVVDFLKNPDKYTQLGAKI-----PKGCLLVGPPGTGKTLLAKAVAG 306

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 307 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 339


>gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa]
          Length = 635

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G   AK  +   +       Q   + R     +P+ +LLVGP G GKT ++R +A 
Sbjct: 347 DDVEGVDSAKEELMEIV----SCLQGSINYRKLGARLPRGVLLVGPPGTGKTLLARAVAG 402

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VGR   +I R+L  VA
Sbjct: 403 EAGVPFFSVSASEFVEM-FVGRGAARI-RELFSVA 435


>gi|319406242|emb|CBI79879.1| cell division protein FtsH [Bartonella sp. AR 15-3]
          Length = 696

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|49246395|gb|AAT58329.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246409|gb|AAT58336.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246411|gb|AAT58337.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246415|gb|AAT58339.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 20  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 77

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 78  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 124


>gi|8778569|gb|AAF79577.1|AC022464_35 F22G5.10 [Arabidopsis thaliana]
          Length = 843

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G ++AK+ +   +       Q P    D    +PK  LLVGP G GKT +++  A 
Sbjct: 335 KDVAGCEEAKQEIMEFVH----FLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 390

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 391 ESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 439


>gi|255019901|ref|ZP_05291976.1| Cell division protein FtsH [Acidithiobacillus caldus ATCC 51756]
 gi|254970681|gb|EET28168.1| Cell division protein FtsH [Acidithiobacillus caldus ATCC 51756]
          Length = 639

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +A  +   R+  + Q+L   +     PK +LL+G  G GKT ++R +A 
Sbjct: 159 DVAGVEEAKEELAEIVDFLRDPQKFQRLGGRI-----PKGVLLMGSPGSGKTLLARAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 214 EARVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 249


>gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
 gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           ruminicola 23]
          Length = 737

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 21/118 (17%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +PR     L + I GQ +A R V  A++           L D     ++L VGPTGVGK
Sbjct: 445 LAPR-----LLQKIYGQDEAIRQVVEAVQ-----MSKAGLLDDNKPLASLLFVGPTGVGK 494

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           T ++R LA+  G   ++ +++++TE            GY+G     ++ D +    N 
Sbjct: 495 TEVARVLAKELGIALLRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNC 552


>gi|255320455|ref|ZP_05361636.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SK82]
 gi|262378351|ref|ZP_06071508.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SH164]
 gi|255302427|gb|EET81663.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SK82]
 gi|262299636|gb|EEY87548.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter
           radioresistens SH164]
          Length = 758

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+A A++              +    + +  GPTGVGKT +++
Sbjct: 451 LERDLKRVVFGQDEAITALASAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 505

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA++ G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 506 QLAKILGLELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 558


>gi|156935700|ref|YP_001439616.1| ATP-dependent metalloprotease [Cronobacter sakazakii ATCC BAA-894]
 gi|156533954|gb|ABU78780.1| hypothetical protein ESA_03569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|221066110|ref|ZP_03542215.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
 gi|220711133|gb|EED66501.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni KF-1]
          Length = 640

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGADEAKEEVKEVVDFLKDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|323491004|ref|ZP_08096198.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
 gi|323395360|gb|EGA88212.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2]
          Length = 672

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K+ + + + +  +  +  AD+   + PK ILLVGP G GKT ++R +A  A
Sbjct: 167 NDVAGADEEKQEL-VEVVDFLKDPRRFADIGARI-PKGILLVGPPGTGKTLLARAVAGEA 224

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 225 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|317144506|ref|XP_001820171.2| protein YME1 [Aspergillus oryzae RIB40]
          Length = 805

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 335 DVHGCDEAKEELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 389

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 390 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTQARSKAPAIIFIDELDAIGAKRNERDA 447

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+ + +++ D    +
Sbjct: 448 AYVKQTLNQLLTELDGFSQTSGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGRM 507

Query: 177 SNF 179
              
Sbjct: 508 DIL 510


>gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 652

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+++AK  ++  +   +             MPK +LLVGP G GKT +++ +A  A 
Sbjct: 196 DVAGEEEAKENLSEIV--SYLDDPKQYANIGATMPKGVLLVGPPGTGKTMLAKAVAGEAN 253

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG      +RDL   A
Sbjct: 254 VPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 283


>gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
 gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 32/186 (17%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK A+      L +  R  ++ A     ++PK +LLVGP G GKT +++ +A 
Sbjct: 164 DVAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQASI 128
            A  PF  +  ++F E+ +VG      +RDL   A       + I       + R+ A I
Sbjct: 219 EAKVPFFSMSGSEFVEM-FVGLGA-SKVRDLFKQAAEKAPCIVFIDEIDAIGKRRDTAGI 276

Query: 129 NAEER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
           +  +        +L+ + G +  S        N  E+    L      D++I +E+ D  
Sbjct: 277 SGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPALTRPGRFDRQIPVELPDLQ 336

Query: 174 SDISNF 179
             I   
Sbjct: 337 GRIDIL 342


>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 1157

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 211 DDVAGVDEAKQDFQEIVDFLKTPEKFSAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 266 GEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFNKA 299


>gi|49246397|gb|AAT58330.1| FtsH-like protein [Lophopyrum elongatum]
 gi|49246413|gb|AAT58338.1| FtsH-like protein [Triticum urartu]
 gi|49246429|gb|AAT58346.1| FtsH-like protein [Triticum urartu]
 gi|49246431|gb|AAT58347.1| FtsH-like protein [Aegilops tauschii]
 gi|49246433|gb|AAT58348.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246447|gb|AAT58355.1| FtsH-like protein [Triticum monococcum]
 gi|49246449|gb|AAT58356.1| FtsH-like protein [Triticum monococcum]
 gi|49246453|gb|AAT58358.1| FtsH-like protein [Aegilops tauschii]
 gi|49246459|gb|AAT58361.1| FtsH-like protein [Aegilops tauschii]
          Length = 151

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 21  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 78

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 79  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 125


>gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab]
 gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-3-3Ab]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 167 DDVAGIEEAKEELQEVVTFLKKPERFTAVGA--KIPKGVLLVGPPGTGKTLLAKAIAGEA 224

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 225 GVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 271


>gi|86160657|ref|YP_467442.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777168|gb|ABC84005.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 621

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++     +L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGVDEAKDELKEIVTFLKDPKSYGRLGARM-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    ++ RDL + A            R +A        L
Sbjct: 217 EASVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------RAKAPAIIFIDEL 262

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           DAL G+   S          ++  ++   ++++  D S+ I
Sbjct: 263 DAL-GRARASMPGMSGGHDEKEQTLNQLLVELDGFDPSAGI 302


>gi|22124596|ref|NP_668019.1| ATP-dependent metalloprotease [Yersinia pestis KIM 10]
 gi|45440435|ref|NP_991974.1| ATP-dependent metalloprotease [Yersinia pestis biovar Microtus str.
           91001]
 gi|165928181|ref|ZP_02224013.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937451|ref|ZP_02226014.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011345|ref|ZP_02232243.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214009|ref|ZP_02240044.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401354|ref|ZP_02306854.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420745|ref|ZP_02312498.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423286|ref|ZP_02315039.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025951|ref|YP_001722456.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis YPIII]
 gi|270489130|ref|ZP_06206204.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
 gi|21957399|gb|AAM84270.1|AE013670_7 integral membrane peptidase, cell division protein [Yersinia pestis
           KIM 10]
 gi|45435292|gb|AAS60851.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
 gi|165914556|gb|EDR33170.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919868|gb|EDR37169.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989729|gb|EDR42030.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204804|gb|EDR49284.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961551|gb|EDR57572.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049379|gb|EDR60787.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057456|gb|EDR67202.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752485|gb|ACA70003.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           YPIII]
 gi|270337634|gb|EFA48411.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
          Length = 647

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 156 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 213

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|329297290|ref|ZP_08254626.1| ATP-dependent metalloprotease [Plautia stali symbiont]
          Length = 641

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 141 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 197

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 198 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 255


>gi|295097664|emb|CBK86754.1| membrane protease FtsH catalytic subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|283788184|ref|YP_003368049.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951638|emb|CBG91338.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 643

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|295688127|ref|YP_003591820.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756]
 gi|295430030|gb|ADG09202.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756]
          Length = 626

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT I+R +A
Sbjct: 151 EDVAGVDEAKEELQEVVDFLKDPAKFQRLGGKI-----PKGALLVGPPGTGKTLIARAVA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 255


>gi|164686639|ref|ZP_02210667.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
 gi|164604368|gb|EDQ97833.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM
           16795]
          Length = 672

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 35/250 (14%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G Q+ K  ++     L+N  R  +L A +     PK IL+VGP G GKT +SR +A
Sbjct: 169 KDVAGLQEEKEDLSEVVDFLKNPKRYIELGARI-----PKGILMVGPPGTGKTYLSRAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEVREQ----- 125
             AG PF  +  + F E+ +VG    ++ RDL + A             D V  +     
Sbjct: 224 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQAKKNAPAIIFIDEIDAVGRKRGAGL 281

Query: 126 --ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                  E+ +   LV              A +N  ++    L      D+EI +   D 
Sbjct: 282 GGGHDEREQTLNQLLVEMDGFGVNQGIIIMAATNRPDILDPALLRPGRFDREIVVGAPDV 341

Query: 173 SSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
               + F +         ++  ++ +K         I   + +    L   + ++ I MD
Sbjct: 342 KGREAIFKVHSRNKPLAKDVKVDVLAKRTPGFTPADIENIMNESA-ILTARKREKQIHMD 400

Query: 232 TVHRDSIQMV 241
           T+  ++I  V
Sbjct: 401 TI-EEAITKV 409


>gi|162419672|ref|YP_001608280.1| ATP-dependent metalloprotease [Yersinia pestis Angola]
 gi|162352487|gb|ABX86435.1| ATP-dependent metallopeptidase HflB [Yersinia pestis Angola]
          Length = 647

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 156 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 213

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|116834072|gb|ABK29901.1| HslU [Buchnera aphidicola]
          Length = 46

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           ++E+++EDISF+AS      + I+++YV  H+    S  D+  FIL
Sbjct: 1   ILEKLMEDISFNASSNSGSKIEINSDYVGKHLDQLISNEDLSRFIL 46


>gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 640

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 171 DDVAGIEEAKEELQEVVTFLKKPERFTAVGA--KIPKGVLLVGPPGTGKTLLAKAIAGEA 228

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 229 GVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 275


>gi|281347954|gb|EFB23538.1| hypothetical protein PANDA_019250 [Ailuropoda melanoleuca]
          Length = 759

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 257 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 314

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 315 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 373

Query: 122 VREQ 125
           V  +
Sbjct: 374 VGRK 377


>gi|261342621|ref|ZP_05970479.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
 gi|288315269|gb|EFC54207.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
          Length = 644

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|158422152|ref|YP_001523444.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
 gi|158329041|dbj|BAF86526.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
          Length = 640

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 EDVAGIDEAKSDLTEIVDFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905]
 gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905]
          Length = 660

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L++  +  ++ A +     PK ILLVGP G GKT ++R +A 
Sbjct: 150 DVAGADEEKAELVEVVDFLKDHRKFTEIGARI-----PKGILLVGPPGTGKTLLARAVAG 204

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 205 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 240


>gi|49246405|gb|AAT58334.1| FtsH-like protein [Triticum urartu]
 gi|49246419|gb|AAT58341.1| FtsH-like protein [Aegilops tauschii]
 gi|49246423|gb|AAT58343.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246425|gb|AAT58344.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246437|gb|AAT58350.1| FtsH-like protein [Triticum urartu]
 gi|49246441|gb|AAT58352.1| FtsH-like protein [Triticum urartu]
 gi|49246443|gb|AAT58353.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246445|gb|AAT58354.1| FtsH-like protein [Triticum urartu]
 gi|49246451|gb|AAT58357.1| FtsH-like protein [Aegilops tauschii]
 gi|49246455|gb|AAT58359.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 150

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 20  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 77

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 78  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 124


>gi|315042828|ref|XP_003170790.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
 gi|311344579|gb|EFR03782.1| cell division protease ftsH [Arthroderma gypseum CBS 118893]
          Length = 805

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 342 DVHGCDEAKDELQELVEFLSNPDRFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 396

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 397 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFTQARAKAPAIIFIDELDAIGAKRNERDA 454

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++++ + D    +
Sbjct: 455 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVNVNLPDVRGRV 514

Query: 177 SNFD 180
              +
Sbjct: 515 DILN 518


>gi|291616004|ref|YP_003518746.1| HflB [Pantoea ananatis LMG 20103]
 gi|291151034|gb|ADD75618.1| HflB [Pantoea ananatis LMG 20103]
          Length = 646

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|262383315|ref|ZP_06076451.1| metalloprotease FtsH [Bacteroides sp. 2_1_33B]
 gi|262294213|gb|EEY82145.1| metalloprotease FtsH [Bacteroides sp. 2_1_33B]
          Length = 678

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 94/277 (33%), Gaps = 46/277 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 190 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  + R   + +  IV     D V      NA 
Sbjct: 245 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNAN 303

Query: 132 -----------ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 304 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 363

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +     F +         ++   F      G       +V      +      + +  + 
Sbjct: 364 NERKEIFGVHLRPIKIDESVDAEFLARQTPGFSGADIANVCNEAALIAARNGKKFVQKED 423

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
                          F++  D+IV          + E
Sbjct: 424 ---------------FMNAVDRIVGGLEKRSKITTEE 445


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 101 PVEINVTF-EDVKGVDEAKQELKEVVEFLKNPNKFSALGGKL-----PKGVLLVGPPGTG 154

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
           KT ++R +A  A  PF      +F E  +G   R V  + +   + A  ++     D V 
Sbjct: 155 KTLLARAVAGEARVPFFHAAGPEFDEILVGQGARRVRDLFKVAKETAPCVIFIDEIDSVG 214

Query: 124 EQASINA--------EERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI 167
            + + +           ++L  + G             N RE   K L      D E+ +
Sbjct: 215 SKRTNSVLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRREDLDKALLRPGRFDVEVTV 274

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
              D       F++  G  +      +L ++         I   V + 
Sbjct: 275 PTPDYHGRKQIFELYLGKILCKEVNVDLLARGTVGFTGADIENMVNQA 322


>gi|119621956|gb|EAX01551.1| AFG3 ATPase family gene 3-like 2 (yeast), isoform CRA_a [Homo
           sapiens]
 gi|119621957|gb|EAX01552.1| AFG3 ATPase family gene 3-like 2 (yeast), isoform CRA_a [Homo
           sapiens]
          Length = 759

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 257 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 314

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 315 GKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 373

Query: 122 VREQ 125
           V  +
Sbjct: 374 VGRK 377


>gi|116626116|ref|YP_828272.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229278|gb|ABJ87987.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 618

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      LR   + Q+L   +     PK +LL+GP G GKT ++R +A
Sbjct: 142 KDVAGVEEAKEELQEIIEFLREPQKFQKLGGRI-----PKGVLLIGPPGTGKTLLARAIA 196

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 197 GEASVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 246


>gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
 gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
          Length = 738

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +A   +      L+N  R ++L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 171 DVAGEDEAVEELNEIKDFLQNPARYERLGAKI-----PRGVLLYGPPGTGKTLLARAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 226 EAGVPFYSISGSDFVEM-FVGVGASRVRDLFEKAKQNAPCIVFVDEIDAV 274


>gi|319899361|ref|YP_004159458.1| cell division protein FtsH [Bartonella clarridgeiae 73]
 gi|319403329|emb|CBI76888.1| cell division protein FtsH [Bartonella clarridgeiae 73]
          Length = 693

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 QDVAGVEEAKQDLQEIVDFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|300853811|ref|YP_003778795.1| putative cell division protein FtsH-like protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300433926|gb|ADK13693.1| predicted cell division protein FtsH-like protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 581

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK +V      L+N  +     A +     PK ILL G  G GKT ++R +A  
Sbjct: 152 VAGNEEAKESVQDIVDFLKNPKKYASYGARM-----PKGILLFGEPGTGKTLLARAIAGE 206

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A  PF  V  + F ++ YVG    +I R L   A +         V     I+A  +  D
Sbjct: 207 AEVPFYAVSGSDFVQV-YVGVGASRI-RQLFKKAKSNKSG---KAVIFIDEIDAIGKKRD 261

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                  +    +     L +    +++  I +   ++ +   D 
Sbjct: 262 GSGSTGGSDERDQTLNALLTEMSGFNEKEGIVIIAATNRLDMLDP 306


>gi|264679343|ref|YP_003279250.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|299532302|ref|ZP_07045695.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
 gi|262209856|gb|ACY33954.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni CNB-2]
 gi|298719710|gb|EFI60674.1| ATP-dependent metalloprotease FtsH [Comamonas testosteroni S44]
          Length = 640

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGADEAKEEVKEVVDFLKDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|218289170|ref|ZP_03493406.1| Microtubule-severing ATPase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240753|gb|EED07932.1| Microtubule-severing ATPase [Alicyclobacillus acidocaldarius LAA1]
          Length = 503

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 19/218 (8%)

Query: 22  GQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
           GQ+ AKR +  AL   R+R +     +R     K ILL GP G GKT +++  A    + 
Sbjct: 69  GQESAKRELMEALDFLRYRDRIAQLGIR---PIKGILLTGPPGTGKTLMAKAAATYTDSV 125

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE-RILDALV 139
           F+    ++F E+ YVG    ++ RDL   A    R   + E ++ A I  +E  ++    
Sbjct: 126 FLSASGSEFVEM-YVGVGASRV-RDLFRRA----RALAKRENKDSAIIFLDEIDVVGGRR 179

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSK 198
           G+ +     +   + L + +  +      V    +++  +   P     G  +       
Sbjct: 180 GQHSHQEYDQTLNQLLTEMDGMNTSQHPFVLVMAATNRPDMLDPALLRPGRFDRQ--IRV 237

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            +     +   + +Q     L  D     +D++ + R+
Sbjct: 238 DLPDKEGRLHILRIQTKNKPLAPD-----VDLEHIARE 270


>gi|145636178|ref|ZP_01791848.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
 gi|145270700|gb|EDK10633.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
          Length = 550

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q L   +     PK IL+VGP G GKT ++R +A 
Sbjct: 67  DVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKI-----PKGILMVGPPGTGKTLLARAIAG 121

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 122 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 157


>gi|313675934|ref|YP_004053930.1| membrane protease ftsh catalytic subunit [Marivirga tractuosa DSM
           4126]
 gi|312942632|gb|ADR21822.1| membrane protease FtsH catalytic subunit [Marivirga tractuosa DSM
           4126]
          Length = 701

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 36/269 (13%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  VA  +   +N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 201 KDVAGLDEAKEEVAEIVEFLKNPSKFTTLGGKI-----PKGALLVGPPGTGKTLLAKAVA 255

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             A  PF  +  + F E+ +VG     V  + +   + A  IV     D + R +     
Sbjct: 256 GEAEVPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIVFIDEIDAIGRSRGGGRM 314

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                   N    +L  + G +  S        N  +V    L      D+++ I+  D 
Sbjct: 315 PGSNDERENTLNSLLVEMDGFSTDSGVIILAATNRPDVLDSALMRPGRFDRQVSIDKPDI 374

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
               + F +  G       L          G       +V      +    + + +DMD 
Sbjct: 375 IGREAIFKVHLGPLKVSKELDAKKLAAQTPGFAGAEIANVCNEAALIAARRNKKAVDMDD 434

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSG 261
             +D+I  V    I  L++ +KI++ D  
Sbjct: 435 F-QDAIDRV----IGGLEKKNKIISPDEK 458


>gi|255014267|ref|ZP_05286393.1| metalloprotease FtsH [Bacteroides sp. 2_1_7]
 gi|298376264|ref|ZP_06986220.1| cell division protein FtsH [Bacteroides sp. 3_1_19]
 gi|298267301|gb|EFI08958.1| cell division protein FtsH [Bacteroides sp. 3_1_19]
          Length = 678

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 190 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  + R   + +  IV     D V      NA 
Sbjct: 245 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNAN 303

Query: 132 -----------ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 304 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 363

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 364 NERKEIFGVH 373


>gi|152995051|ref|YP_001339886.1| ATP-dependent metalloprotease FtsH [Marinomonas sp. MWYL1]
 gi|150835975|gb|ABR69951.1| ATP-dependent metalloprotease FtsH [Marinomonas sp. MWYL1]
          Length = 659

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K      P + +      + G  +AK     +   LR   + Q+L   +     P+ IL+
Sbjct: 138 KSKARLLPEDQIKTTFADVAGCDEAKEDTSELVDFLREPSKFQRLGGKI-----PRGILM 192

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 193 CGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|311277848|ref|YP_003940079.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
 gi|308747043|gb|ADO46795.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
          Length = 647

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|238918418|ref|YP_002931932.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
 gi|238867986|gb|ACR67697.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
          Length = 649

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R           +PK IL+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLRDPSRFQKLGGKIPKGILMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|218961143|ref|YP_001740918.1| Cell division protein FtsH, ATP-dependent zinc protease [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729800|emb|CAO80712.1| Cell division protein FtsH, ATP-dependent zinc protease [Candidatus
           Cloacamonas acidaminovorans]
          Length = 744

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L++  + Q+L   +     P+ +LLVG  G GKT +++ ++
Sbjct: 245 KDVAGVDEAKEELQEIVEFLKDPKKFQRLGGRI-----PRGVLLVGQPGTGKTLLAKAVS 299

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 300 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQAKKN 336


>gi|308811308|ref|XP_003082962.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116054840|emb|CAL56917.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 809

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AKR +   +   +N  + + L A +     P   LLVGP G GKT +++  A
Sbjct: 319 KDVAGCNEAKREIMEFVDFLKNPKKYEALGAKI-----PHGALLVGPPGTGKTLLAKATA 373

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 374 GEAGVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 407


>gi|326435213|gb|EGD80783.1| 26S protease regulatory subunit [Salpingoeca sp. ATCC 50818]
          Length = 878

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 18  RYIIGQQDAKRAVA--IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +A     ++ Q         +PK  +LVGP G GKT +++ +A 
Sbjct: 412 KDVAGLSEAKAELKEFVAFLTHPQQFQTLGAT----VPKGAMLVGPPGTGKTLLAKAVAG 467

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
            AG PF+ V  + F E+ +VG     V  + +   D A  I+     D V  +A   A 
Sbjct: 468 EAGVPFLAVSGSDFVEM-FVGVGPSRVRDLFKQARDNAPCIIYIDEIDAV-GKARGAAN 524


>gi|294013426|ref|YP_003546886.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium
           japonicum UT26S]
 gi|292676756|dbj|BAI98274.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium
           japonicum UT26S]
          Length = 861

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEAELGKRVIGQAEAVKAVSTAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  +++++++F E   V R
Sbjct: 617 KALAGFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|219855758|ref|YP_002472880.1| hypothetical protein CKR_2415 [Clostridium kluyveri NBRC 12016]
 gi|219569482|dbj|BAH07466.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 608

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + V   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 176 VAGNEEAKESVKDVVDFLKNPEKYTSYGARM-----PKGIMLYGQPGTGKTLLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A  PF  V  + F +I YVG    +I R L   A N         V     I+A  +  D
Sbjct: 231 ANVPFYAVSGSDFIQI-YVGVGASRI-RQLFKKARNNSTG---KAVIFIDEIDAIGKKRD 285

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                  +    +     L +    +++  I V   ++ +   D 
Sbjct: 286 GSNSSGGSDERDQTLNALLTEMSGFNEKKGIVVIAATNRLDMLDP 330


>gi|49246401|gb|AAT58332.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246403|gb|AAT58333.1| FtsH-like protein [Triticum monococcum]
 gi|49246417|gb|AAT58340.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246435|gb|AAT58349.1| FtsH-like protein [Triticum monococcum]
          Length = 152

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 21  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 78

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 79  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 125


>gi|22329400|ref|NP_172231.2| ftsh10 (FtsH protease 10); ATP binding / ATPase/
           metalloendopeptidase/ nucleoside-triphosphatase/
           nucleotide binding / zinc ion binding [Arabidopsis
           thaliana]
 gi|75331189|sp|Q8VZI8|FTSHA_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 10,
           mitochondrial; Short=AtFTSH10; Flags: Precursor
 gi|17381253|gb|AAL36045.1| At1g07510/F22G5_9 [Arabidopsis thaliana]
 gi|21700787|gb|AAM70517.1| At1g07510/F22G5_9 [Arabidopsis thaliana]
 gi|332190016|gb|AEE28137.1| FTSH protease 10 [Arabidopsis thaliana]
          Length = 813

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G ++AK+ +   +       Q P    D    +PK  LLVGP G GKT +++  A 
Sbjct: 327 KDVAGCEEAKQEIMEFVH----FLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 382

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 383 ESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 431


>gi|332255287|ref|XP_003276764.1| PREDICTED: AFG3-like protein 2 [Nomascus leucogenys]
          Length = 864

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK+ +L GP G 
Sbjct: 362 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKDAILTGPPGT 419

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI +  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 420 GKTLLAKATAGEANVPFITISGSEFLEM-FVGVGPARVRDLFALARKNAPCILFIDEIDA 478

Query: 122 VREQ 125
           V  +
Sbjct: 479 VGRK 482


>gi|302659076|ref|XP_003021233.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
 gi|291185121|gb|EFE40615.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517]
          Length = 717

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 254 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 308

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 309 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFAQARAKAPAIIFIDELDAIGAKRNERDA 366

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++D+ + D    +
Sbjct: 367 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGRV 426

Query: 177 SNFD 180
              +
Sbjct: 427 DILN 430


>gi|317046735|ref|YP_004114383.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
 gi|316948352|gb|ADU67827.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
          Length = 645

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK +L+VGP G GK
Sbjct: 145 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 201

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 202 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 259


>gi|254448846|ref|ZP_05062302.1| cell division protein FtsH [gamma proteobacterium HTCC5015]
 gi|198261536|gb|EDY85825.1| cell division protein FtsH [gamma proteobacterium HTCC5015]
          Length = 646

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 158 DVAGCEEAKEDVVELVDFLRDPGKFQRLGGQI-----PRGVLMVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 658

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L++  +  ++ A +     PK ILLVGP G GKT ++R +A 
Sbjct: 150 DVAGADEEKAELVEVVDFLKDHRKFTEIGARI-----PKGILLVGPPGTGKTLLARAVAG 204

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 205 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 240


>gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.]
          Length = 609

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  ++  +   +   +  +L   +     PK +LL+GP G GKT ++R +A
Sbjct: 153 EDVAGIEEAKEELSEIVEFLKEPKKYTRLGGRI-----PKGVLLMGPPGTGKTLLARAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFIQGKKNAPCIIFIDEIDAV 257


>gi|303245767|ref|ZP_07332050.1| AAA ATPase [Desulfovibrio fructosovorans JJ]
 gi|302493030|gb|EFL52895.1| AAA ATPase [Desulfovibrio fructosovorans JJ]
          Length = 372

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 74/271 (27%)

Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
           +   +++    V    ++       V +DE DKI  R SG    VS    Q  LL ++EG
Sbjct: 103 EARAKVLFGADVTAAELKDYLENATVCVDEVDKISGRISG-KPNVSGIATQYALLTMLEG 161

Query: 282 ------SSVSTKYGSI------NTDHILFIASGAFH------------------------ 305
                 ++V      +      +T  +LFI  GAF                         
Sbjct: 162 EQFLYRATVREDGREVEVDLPLDTGRLLFICGGAFEELYDQVYGCLVNRRDDRRLKEVSE 221

Query: 306 VSRPAD--------------------------LLPEIQGRFPVRVHLKSLNKSDFRLILT 339
           V R AD                          ++P+   RF     L  L + + R I  
Sbjct: 222 VERRADGTVSVRTVARFKLCDYLRLADLFTYGMMPQFISRFGSIAVLDDLGREELRRIFL 281

Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
           +  ++ +    E  +  GI L  TE +++       +  +    IGAR L+ +   ++  
Sbjct: 282 EAANSPLRLTMEYFRHMGIRLAVTEGAVN----AIADAAAKNSRIGARALREIFNGLIAP 337

Query: 400 ISFS-------ASDLQEKTVVIDAEYVRLHI 423
             F        A      T+ ID E V  ++
Sbjct: 338 HEFDPFHSPRLAQTESGPTLTIDQETVTQYL 368



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 3  LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
          +  +  P  I + L + ++GQ+D    ++++L                L   N+LL+G +
Sbjct: 1  MEESLLPVAIDAFLGQRVLGQKDLLTRISVSLYKHIH----------GLPAPNVLLIGNS 50

Query: 63 GVGKTAISRRLARLAGAP--------FIKVEVTKFTEIGYVGRN 98
          G GKT + + +     A          I +          VG +
Sbjct: 51 GTGKTTLMQAITAFYDAHESLSRLRVMIVINANTLA-AEVVGED 93


>gi|301309366|ref|ZP_07215308.1| putative cell division protein FtsH [Bacteroides sp. 20_3]
 gi|300832455|gb|EFK63083.1| putative cell division protein FtsH [Bacteroides sp. 20_3]
          Length = 684

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  + R   + +  IV     D V      NA 
Sbjct: 251 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNAN 309

Query: 132 -----------ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 310 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 369

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 370 NERKEIFGVH 379


>gi|297843542|ref|XP_002889652.1| FTSH10 [Arabidopsis lyrata subsp. lyrata]
 gi|297335494|gb|EFH65911.1| FTSH10 [Arabidopsis lyrata subsp. lyrata]
          Length = 813

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G ++AK+ +   +       Q P    D    +PK  LLVGP G GKT +++  A 
Sbjct: 327 KDVAGCEEAKQEIMEFVH----FLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 382

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 383 ESAVPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 431


>gi|284006662|emb|CBA71924.1| ATP-dependent metalloprotease [Arsenophonus nasoniae]
          Length = 651

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK IL+VGP G GK
Sbjct: 146 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPGRFQKLGGKIPKGILMVGPPGTGK 202

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 203 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 260


>gi|150008468|ref|YP_001303211.1| metalloprotease FtsH [Parabacteroides distasonis ATCC 8503]
 gi|310946752|sp|A6LD25|FTSH_PARD8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|149936892|gb|ABR43589.1| AAA-metalloprotease FtsH, with ATPase domain [Parabacteroides
           distasonis ATCC 8503]
          Length = 684

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  + R   + +  IV     D V      NA 
Sbjct: 251 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNAN 309

Query: 132 -----------ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 310 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 369

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 370 NERKEIFGVH 379


>gi|316935669|ref|YP_004110651.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
 gi|315603383|gb|ADU45918.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris
           DX-1]
          Length = 617

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +    L    MPK ILLVGP G GKT +++ +A  AG
Sbjct: 158 DVAGVDEAKDELKEIV-DFLKDPEGYGRLGG-RMPKGILLVGPPGTGKTLLAKAVAGEAG 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 216 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 245


>gi|296808071|ref|XP_002844374.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
 gi|238843857|gb|EEQ33519.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS
           113480]
          Length = 803

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 340 DVHGCDEAKDELQELVEFLSNPDRFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 394

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L + A +               ++R+E   
Sbjct: 395 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNQARSKAPAIIFIDELDAIGAKRNERDA 452

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++++ + D    +
Sbjct: 453 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVNVNLPDVRGRV 512

Query: 177 SNFD 180
              +
Sbjct: 513 DILN 516


>gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
 gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
          Length = 660

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K   R +   L+N  R  +L A +     PK +LLVGP G GKT ++R +A 
Sbjct: 180 DVAGADEEKEELREIVEFLKNPKRFNELGARI-----PKGVLLVGPPGTGKTLLARAVAG 234

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 235 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 270


>gi|114570962|ref|YP_757642.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
 gi|114341424|gb|ABI66704.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
          Length = 628

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 157 DDVAGVDEAKEELQEVVEFLKDPSKFQRLGGKI-----PKGALLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 660

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
           L   + G Q+AK+ +   +       + P         +PK +LLVGP G GKT +++ +
Sbjct: 205 LFDDVAGIQEAKQELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAI 260

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  ++F E+ +VG     V  + R   + A  +V     D V
Sbjct: 261 AGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFRKAKENAPCLVFIDEIDAV 311


>gi|329851349|ref|ZP_08266106.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis
           biprosthecum C19]
 gi|328840195|gb|EGF89767.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis
           biprosthecum C19]
          Length = 771

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R++ ++L R + GQ +A   ++ A++         A LRD   P    L  GPTGVGKT 
Sbjct: 459 RDMKTDLQRVVFGQDEAIEQLSTAIK------LARAGLRDPQKPIGCYLFSGPTGVGKTE 512

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++++L+   G   ++ +++++ E            GY+G +   ++ D VD   +
Sbjct: 513 VAKQLSATMGIDLLRFDMSEYMERHTVSRLIGAPPGYIGHDQGGLLTDAVDQQPH 567


>gi|298242611|ref|ZP_06966418.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297555665|gb|EFH89529.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 656

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK+ +   +    +  +  A L   + PK +LLVGP G GKT ISR +A  AG
Sbjct: 172 DVAGVEEAKQELQEIVE-FLKYPEKFAALGARI-PKGLLLVGPPGTGKTLISRAVAGEAG 229

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 230 VPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 259


>gi|49246461|gb|AAT58362.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
          Length = 152

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 20  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 77

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 78  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 124


>gi|49246399|gb|AAT58331.1| FtsH-like protein [Aegilops tauschii]
 gi|49246407|gb|AAT58335.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246421|gb|AAT58342.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum]
 gi|49246457|gb|AAT58360.1| FtsH-like protein [Triticum urartu]
          Length = 151

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 20  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 77

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 78  GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 124


>gi|148260430|ref|YP_001234557.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5]
 gi|326403623|ref|YP_004283705.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
 gi|146402111|gb|ABQ30638.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum
           JF-5]
 gi|325050485|dbj|BAJ80823.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301]
          Length = 633

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++I       + G  +AK   + V   LRN     +L A      +PK ILLVGP G GK
Sbjct: 152 KDIKVTF-ADVAGVDEAKAELQEVVDFLRNPKEYGRLGA-----RVPKGILLVGPPGTGK 205

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 206 TLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAARV-RDLFEQA 247


>gi|150017878|ref|YP_001310132.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149904343|gb|ABR35176.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 627

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK   + +   L    R  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 180 KDVAGQEEAKESLKEIVDFLHKPERYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 235 GEAKVPFFSLSGSGFVEM-FVGVGASRV-RDLFAQAEKQ 271


>gi|296161227|ref|ZP_06844036.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
 gi|295888568|gb|EFG68377.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1]
          Length = 634

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++     +L A      +PK +LLVGP G GKT ++R +A 
Sbjct: 165 DVAGVDEAKDELKEVVSFLKDPRSYGRLGAH-----VPKGVLLVGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESRRDEVREQASINAEERI 134
            AG  F  +  ++F E+ +VG    ++ RDL + A  +       DE+            
Sbjct: 220 EAGVAFFSISGSEFVEM-FVGVGAARV-RDLFEQARQHAPAIVFIDELDSLGRARG---- 273

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             AL G        +   + L + +  D  I + +   ++     D 
Sbjct: 274 -SALPGGGGHDEKEQTLNQLLSELDGFDTSIGVVLLAATNRPEILDP 319


>gi|256841515|ref|ZP_05547022.1| metalloprotease FtsH [Parabacteroides sp. D13]
 gi|256737358|gb|EEU50685.1| metalloprotease FtsH [Parabacteroides sp. D13]
          Length = 684

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 31/190 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  + F E+ +VG     V  + R   + +  IV     D V      NA 
Sbjct: 251 GEANVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNAN 309

Query: 132 -----------ERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  + S        N  ++  K L      D++I +E+ D 
Sbjct: 310 MNSNDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDL 369

Query: 173 SSDISNFDIP 182
           +     F + 
Sbjct: 370 NERKEIFGVH 379


>gi|328545133|ref|YP_004305242.1| ATP-dependent metallopeptidase HflB subfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414875|gb|ADZ71938.1| ATP-dependent metallopeptidase HflB subfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 604

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 29/181 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           R+I     + + G  +AKR +      L++     +L A      +PK ILLVGP G GK
Sbjct: 149 RDIKVSF-KDVAGVDEAKRELQELVDFLQDPENYGRLGA-----RVPKGILLVGPPGTGK 202

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           T ++R +A  AG  F  +  ++F E+ +VG    ++ RDL + A               A
Sbjct: 203 TLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAARV-RDLFEQARKAAP----------A 250

Query: 127 SINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            I  +E  LDAL          A     +   + L + +  D  + I +   ++     D
Sbjct: 251 IIFIDE--LDALGRARGANPMIANDEKEQTLNQLLAELDGFDPSVGIILLAATNRPEILD 308

Query: 181 I 181
            
Sbjct: 309 P 309


>gi|83645152|ref|YP_433587.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83633195|gb|ABC29162.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 759

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT +
Sbjct: 452 RNLQRNLKMVVFGQDPAIEALVTAIK-----LSRAGLKSEGKPEGSFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA++ G   ++ +++++ E            GYVG +   ++ + V+   + 
Sbjct: 507 TRQLAKILGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAVNKNPHC 561


>gi|298204408|emb|CBI16888.3| unnamed protein product [Vitis vinifera]
          Length = 471

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTA 68
           +IVS     + G   AK  +   +       Q  +D       +P+ +LLVGP G GKT 
Sbjct: 178 QIVSF--DDVEGVDAAKVELMEIV----SCLQGASDYNKLGAKLPRGVLLVGPPGTGKTL 231

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           ++R +A  AG PF  V  ++F E+ +VGR   ++ RDL +VA   
Sbjct: 232 LARAVAGEAGVPFFSVSASEFVEL-FVGRGAARV-RDLFNVARKC 274


>gi|189463184|ref|ZP_03011969.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
 gi|189430163|gb|EDU99147.1| hypothetical protein BACCOP_03897 [Bacteroides coprocola DSM 17136]
          Length = 678

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + GQ  AK+ V   +    ++ Q   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 190 KDVAGQAAAKQEVEEIVE-FLKQPQKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 248 DVPFFSISGSDFVEM-FVGVGASRV-RDLFRQA 278


>gi|170084217|ref|XP_001873332.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650884|gb|EDR15124.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 658

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +    +  + PA        +P+  +L GP G GKT +++  A 
Sbjct: 159 KDVAGMDEAKEEIMEFV----KFLKEPAKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 215 EASVPFLSVSGSEFVEM-FVGVGSSRV-RDLFASAKKN 250


>gi|149928084|ref|ZP_01916331.1| Putative ATP-dependent Clp protease ATP- binding subunit
           [Limnobacter sp. MED105]
 gi|149823170|gb|EDM82407.1| Putative ATP-dependent Clp protease ATP- binding subunit
           [Limnobacter sp. MED105]
          Length = 774

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 102/262 (38%), Gaps = 32/262 (12%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ  A  A+A A++            + +    + L  GPTGVGKT +
Sbjct: 460 ATLDRDLKATVFGQDPAIEALANAIK-----MSRAGLGKADKPIGSFLFSGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA + G   ++ +++++ E            GYVG +   ++ + +    + V    
Sbjct: 515 AKQLAFILGIEMLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHCVL--L 572

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T N         R  +  +  I +     +  ++ 
Sbjct: 573 LDEI-EKAHPDVFNILLQVMDNGTLTDNNG-------RKADFRNVIIIMTTNAGAEALTK 624

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
             I    S    +  E   ++     + ++   +   +  L  +   R++D   +  +  
Sbjct: 625 RGIGFMESKVQGDEMEDIKRMFSPEFRNRLDSVIS--FRALDEEIILRVVDKFLMELEEQ 682

Query: 239 QMVENYGIVFLDEFDKIVARDS 260
              +    VF DE  K +A+  
Sbjct: 683 LHQKKVDAVFTDELRKHLAKKG 704


>gi|269137757|ref|YP_003294457.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|267983417|gb|ACY83246.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|304557814|gb|ADM40478.1| Cell division protein FtsH [Edwardsiella tarda FL6-60]
          Length = 646

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R           +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLRDPSRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|254422833|ref|ZP_05036551.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196190322|gb|EDX85286.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 626

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +   DL   + PK +LLVGP G GKT +++ +A  AG
Sbjct: 163 DVAGVDEAKTELVEIV-DFLKNSKRFTDLGARI-PKGVLLVGPPGTGKTLLAKAVAGEAG 220

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 221 VPFFSISGSEFIEM-FVGVGSSRV-RDLFEQAKKQ 253


>gi|209543376|ref|YP_002275605.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531053|gb|ACI50990.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKSELQEIVDFLRDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKAAPCIIFIDEIDAV 260


>gi|162146632|ref|YP_001601091.1| cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785207|emb|CAP54753.1| Cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 646

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 159 DDVAGIDEAKSELQEIVDFLRDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKAAPCIIFIDEIDAV 263


>gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
 gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens
           QYMF]
          Length = 689

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K     +   L+N  +  +L A +     PK IL++GP G GKT +++ +A
Sbjct: 165 DDVAGLDEEKAEVEELVDFLKNPKKYIELGARI-----PKGILMIGPPGTGKTYLTKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 253


>gi|302823487|ref|XP_002993396.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
 gi|300138827|gb|EFJ05581.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
          Length = 892

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 27/217 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +  + +    + L++  R  ++         P  +LL GP G GKT +++ +A
Sbjct: 361 KDVAGIDEVVKELQELVVYLKDPERFARMGTK-----PPHGVLLEGPPGCGKTLLAKAVA 415

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF ++  ++F E+  VG    ++ RDL            R +V   A +  +E  
Sbjct: 416 GEAGVPFYQMAGSEFVEV-LVGVGAARM-RDLF----------LRAKVNRPAVVFIDE-- 461

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLS 193
           +DAL G  +  + +     K        +E +  +     ++  FD   G   +G  N +
Sbjct: 462 IDALGGARSEFHGKRAMDDKTATFHAGTQERETTLNQLLIELDGFDTGKGVIFLGATNRA 521

Query: 194 ELFSKVMGSGRKKKIRM----SVQKCYPELMRDESDR 226
           ++    +    +   R+           E+++  S++
Sbjct: 522 DMLDPALLRPGRFDRRILISPPKASARYEILKVHSEK 558


>gi|260589993|ref|ZP_05855906.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260539800|gb|EEX20369.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 631

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           +TF  S  +I            + G+ +AK  ++  +    N  + +++ A +     PK
Sbjct: 159 MTFGKSNAKIYVNSSTGIKFSDVAGEDEAKELLSEIVDYLHNPDKYKEIGASM-----PK 213

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             LLVGP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 214 GALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 268


>gi|218885562|ref|YP_002434883.1| ATP-dependent Clp protease ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756516|gb|ACL07415.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 816

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 27/232 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGKTA 68
           R +  +L   + GQ  A   ++ A+       +  A L R++    + L  GPTGVGKT 
Sbjct: 453 RTLDEDLRNVVFGQDAAVGILSRAI------LRARAGLGREDRPTGSFLFYGPTGVGKTE 506

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
           ++RRLA + G  F++ +++++ E            GYVG +   ++ + +      V   
Sbjct: 507 LARRLAEVMGIGFLRYDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTEAIRKQPYTVL-- 564

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DE+ E+A  +    +L  +   T T NT      +     ++      E++  +    
Sbjct: 565 LLDEI-EKAHPDIFNILLQVMDYATLTDNTGRKADFRNVVLIMTSNAGVREMSAPAIGFG 623

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                  A  G   +  +FS    +     I       +  L     +R++D
Sbjct: 624 ATAQEDMAGKGRKAVENMFSPEFRNRLDAMIP------FAGLTTPVMERIVD 669


>gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 624

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +A  +   +N  R + + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 167 EDVAGVEEAKTELAEIVEFLKNPQRYKAIGARI-----PRGVLLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 222 GEAKVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA 255


>gi|15597816|ref|NP_251310.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa PAO1]
 gi|107102142|ref|ZP_01366060.1| hypothetical protein PaerPA_01003192 [Pseudomonas aeruginosa PACS2]
 gi|116050607|ref|YP_790574.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152987799|ref|YP_001347951.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PA7]
 gi|218891219|ref|YP_002440085.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa LESB58]
 gi|254235606|ref|ZP_04928929.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa C3719]
 gi|254241053|ref|ZP_04934375.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa 2192]
 gi|296388921|ref|ZP_06878396.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PAb1]
 gi|313107657|ref|ZP_07793840.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa 39016]
 gi|9948686|gb|AAG06008.1|AE004690_8 ATP-binding protease component ClpA [Pseudomonas aeruginosa PAO1]
 gi|115585828|gb|ABJ11843.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167537|gb|EAZ53048.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa C3719]
 gi|126194431|gb|EAZ58494.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa 2192]
 gi|150962957|gb|ABR84982.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           aeruginosa PA7]
 gi|218771444|emb|CAW27211.1| ATP-binding protease component ClpA [Pseudomonas aeruginosa LESB58]
 gi|310880342|gb|EFQ38936.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           aeruginosa 39016]
          Length = 758

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ DA  +++ A++              +    + L  GPTG
Sbjct: 449 SDKELLRNLERDLKLTVFGQDDAIESLSTAIK-----LSRAGLKAPDKPVGSFLFAGPTG 503

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 504 VGKTEVARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKTPH 563

Query: 113 I 113
            
Sbjct: 564 C 564


>gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
 gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis
           50-1 BON]
          Length = 602

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K   + V   L++  +  +L A +     PK +LL+GP G GKT +++ +A
Sbjct: 160 NDVAGADEEKQELKEVVEFLKSPRKFLELGARI-----PKGVLLIGPPGTGKTLLAKAVA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 215 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQAKKN 251


>gi|329889201|ref|ZP_08267544.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           diminuta ATCC 11568]
 gi|328844502|gb|EGF94066.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas
           diminuta ATCC 11568]
          Length = 767

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+ ++L R + GQ+ A   V+ A++         A LRD   P    L  GPTGVGK
Sbjct: 455 SLRELETDLKRVVFGQEQAIDQVSAAMK------LARAGLRDPNKPIGAFLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           T ++ +LA   G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 TEVANQLAATLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVDQHPHS 566


>gi|304393349|ref|ZP_07375277.1| cell division protease FtsH [Ahrensia sp. R2A130]
 gi|303294356|gb|EFL88728.1| cell division protease FtsH [Ahrensia sp. R2A130]
          Length = 646

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P  +LLVGP G GKT  +R +A 
Sbjct: 158 DVAGVDEAKEDLVEIVDFLRDPQKFQRLGGKM-----PHGVLLVGPPGTGKTLTARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 213 EAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 261


>gi|284929257|ref|YP_003421779.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809701|gb|ADB95398.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 626

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 91/264 (34%), Gaps = 39/264 (14%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 174 DVAGIDEAKEELQEVVTFLKEPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V  Q       
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKESAPCLIFIDEIDAVGRQ------- 280

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILN 191
           R      G      T      ++   E +   I I   +    + S    PG     ++ 
Sbjct: 281 RGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMV 340

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTV-----HRDS 237
            +  F   +           +             P     +   L++   +      +++
Sbjct: 341 DAPDFKGRVEILEVHARNKKLADDVSLKSVARRTPGFSGADLANLLNEAAILTARRRKEA 400

Query: 238 IQMVENYGIVFLDEFDKIVARDSG 261
           I  +E       D  D+IVA   G
Sbjct: 401 ITTLEID-----DSIDRIVAGMEG 419


>gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 652

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K      P+  V      + G ++AK  +      L++  +   + A +     P  +LL
Sbjct: 166 KAKMTMDPK--VKITFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARI-----PTGVLL 218

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D 
Sbjct: 219 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQ 267


>gi|317501238|ref|ZP_07959443.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897414|gb|EFV19480.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 685

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 311


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040222|gb|ACT57018.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L +  + ++L   +     P  +LLVGP G GKT ++R +A
Sbjct: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI-----PHGVLLVGPPGTGKTLLARAVA 202

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A N 
Sbjct: 203 GEANVPFFTISGSDFVEL-FVGVGASRV-RDMFEQAKNN 239


>gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIDEAKEELQEIVTFLKQPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIDEAKEELQEIVTFLKQPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|308066893|ref|YP_003868498.1| cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305856172|gb|ADM67960.1| Cell division protein ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 678

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSKARLYNEEKKKVTFEDVAGADEEKQELVEVVEFLKDPRKFAAVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|294634508|ref|ZP_06713043.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
 gi|291092022|gb|EFE24583.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
          Length = 657

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R           +PK IL+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLRDPSRFQKLGGKIPKGILMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256


>gi|134298005|ref|YP_001111501.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum reducens MI-1]
 gi|134050705|gb|ABO48676.1| membrane protease FtsH catalytic subunit [Desulfotomaculum reducens
           MI-1]
          Length = 615

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +A  +   ++  +  ++ A +     PK +LL GP G GKT ++R +A
Sbjct: 165 EDVAGADEVKEELAEIVDFLKSPKKFNEIGAKI-----PKGVLLFGPPGTGKTLLARAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 256


>gi|126321956|ref|XP_001371403.1| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast)
           [Monodelphis domestica]
          Length = 851

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 339 TAKVLKDEMDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 396

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 397 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFSVARKNAPCILFIDEIDA 455

Query: 122 VREQ 125
           V  +
Sbjct: 456 VGRK 459


>gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 655

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K      P+  V      + G ++AK  +      L++  +   + A +     P  +LL
Sbjct: 166 KAKMTMDPK--VKVTFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARI-----PTGVLL 218

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D 
Sbjct: 219 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQ 267


>gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 694

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 171 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 258


>gi|297796823|ref|XP_002866296.1| hypothetical protein ARALYDRAFT_496010 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312131|gb|EFH42555.1| hypothetical protein ARALYDRAFT_496010 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 802

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 33/180 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  R  +L A       P+ +L VG  G GKT +++ +A 
Sbjct: 326 DVAGVDEAKEELEEIVEFLKNPDRYVRLGA-----RPPRGVLPVGLPGTGKTLLAKAVAG 380

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRD 120
            +  PFI    ++F E+ YVG    ++ RDL                  A+   R+ +  
Sbjct: 381 ESDVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGKFR 438

Query: 121 EVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
            V          ++L  + G  ++S        N  +V    LR     D+ + +E  D 
Sbjct: 439 MVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDK 498


>gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 627

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 172 DDVAGIDEAKEELQEVVTFLKQPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 227 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 276


>gi|148261529|ref|YP_001235656.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidiphilium
           cryptum JF-5]
 gi|326405017|ref|YP_004285099.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidiphilium
           multivorum AIU301]
 gi|146403210|gb|ABQ31737.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidiphilium
           cryptum JF-5]
 gi|325051879|dbj|BAJ82217.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidiphilium
           multivorum AIU301]
          Length = 775

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +  +L   + GQ  A  A++ A++              E      L  GPTGVGKT
Sbjct: 454 TLRTLERDLKSMVFGQDSAIEALSAAIK-----LARAGLRDAEKPIGCYLFSGPTGVGKT 508

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            ++R+LA   G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 509 EVARQLASTLGIELTRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDSVDQHPHC 565


>gi|328947523|ref|YP_004364860.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
 gi|328447847|gb|AEB13563.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM
           2489]
          Length = 689

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           V    + + G  +AK  +   + +  ++ +   D+  ++ PK  LLVGP G GKT ++R 
Sbjct: 206 VKTRFQDVAGVDEAKEELMELV-DFLKQPKKYTDIGGKI-PKGALLVGPPGTGKTLLARA 263

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF ++  + F E+ +VG    ++ RDL   A
Sbjct: 264 VAGEAGVPFFRISGSDFVEM-FVGVGASRV-RDLFRSA 299


>gi|262274889|ref|ZP_06052700.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
 gi|262221452|gb|EEY72766.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
          Length = 649

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +  +  + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTFND-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|257438589|ref|ZP_05614344.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198958|gb|EEU97242.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 608

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+ +AK  +   +   +       +     MPK ILLVGP G GKT +++ +A  + 
Sbjct: 168 DVAGEDEAKENLQEVVN--YLHDPSKYESIGAKMPKGILLVGPPGTGKTMLAKAVAGESN 225

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG      +RDL   A
Sbjct: 226 VPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 255


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI    D  + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 311 PEEIHVTFDD-VKGCDEAKQELKEVVEFLKSPDKFSNLGGKL-----PKGVLLVGPPGTG 364

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 365 KTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 407


>gi|160871571|ref|ZP_02061703.1| ATP-dependent metallopeptidase HflB [Rickettsiella grylli]
 gi|159120370|gb|EDP45708.1| ATP-dependent metallopeptidase HflB [Rickettsiella grylli]
          Length = 642

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  V+     L++  + Q+L   +     P+ +LL+GP G GKT ++R +A 
Sbjct: 157 DVAGAEEAKEEVSELVEFLKDPAKFQKLGGKI-----PRGVLLMGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 260


>gi|75675887|ref|YP_318308.1| AAA ATPase [Nitrobacter winogradskyi Nb-255]
 gi|74420757|gb|ABA04956.1| AAA ATPase [Nitrobacter winogradskyi Nb-255]
          Length = 801

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  A+  +++              E    + L  GPTGVGKT +
Sbjct: 459 KHLEQTLKRVVFGQDRAIEALTASIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLAEALGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHS 568


>gi|15599945|ref|NP_253439.1| cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|107103848|ref|ZP_01367766.1| hypothetical protein PaerPA_01004919 [Pseudomonas aeruginosa PACS2]
 gi|116052898|ref|YP_793215.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893846|ref|YP_002442715.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|254238513|ref|ZP_04931836.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|254244347|ref|ZP_04937669.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|313109732|ref|ZP_07795672.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
 gi|9951013|gb|AAG08137.1|AE004888_12 cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|115588119|gb|ABJ14134.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170444|gb|EAZ55955.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|126197725|gb|EAZ61788.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|218774074|emb|CAW29890.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|310882174|gb|EFQ40768.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
          Length = 639

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKH 245


>gi|310639530|ref|YP_003944288.1| ATP-dependent metalloprotease ftsh [Paenibacillus polymyxa SC2]
 gi|309244480|gb|ADO54047.1| ATP-dependent metalloprotease FtsH [Paenibacillus polymyxa SC2]
          Length = 679

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSKARLYNEEKKKVTFEDVAGADEEKQELVEVVEFLKDPRKFAAVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|302833547|ref|XP_002948337.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f.
           nagariensis]
 gi|300266557|gb|EFJ50744.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT +++ +A
Sbjct: 255 DDVAGCDGAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLAKAVA 309

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 310 GEAGVPFFSCAASEFVEV-FVGVGASRV-RDLFEKA 343


>gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 675

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L++  +  ++ A +     PK ILLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKAELVEVVEFLKDHRKFTEIGARI-----PKGILLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|197106744|ref|YP_002132121.1| cell division protein FtsH [Phenylobacterium zucineum HLK1]
 gi|196480164|gb|ACG79692.1| cell division protein FtsH [Phenylobacterium zucineum HLK1]
          Length = 627

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LL+GP G GKT I+R +A
Sbjct: 153 EDVAGVDEAKEELQEVVDFLKDPQKFQRLGGKI-----PKGALLIGPPGTGKTLIARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 208 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 257


>gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC
           7002]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 DDVAGIEEAKEELQEVVTFLKQPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|194334959|ref|YP_002016819.1| ATPase AAA-2 domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194312777|gb|ACF47172.1| ATPase AAA-2 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 440

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL   +IGQ +A RAV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEAELHERVIGQDNAVRAVSEAVK------RSRAGMGDEKKPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDEDAMIRIDMSEYMESHTVSRLV 220


>gi|332300078|ref|YP_004441999.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177141|gb|AEE12831.1| ATP-dependent metalloprotease FtsH [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 703

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 37/277 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+N  +  +L   +     PK  LLVGP G GKT  ++ +A
Sbjct: 212 DDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKI-----PKGALLVGPPGTGKTLFAKAVA 266

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQASINA 130
             A  PF  +  + F E+ +VG    ++ RDL   A      I+     D V    S NA
Sbjct: 267 GEAHVPFFSISGSDFVEM-FVGVGASRV-RDLFKQAKEKSPCIIFIDEIDAVGRARSKNA 324

Query: 131 -----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                +ER      +L  + G    S        N  ++  K L      D++I +++ D
Sbjct: 325 GFSSNDERENTLNQLLTEMDGFDGNSGVIILAATNRVDILDKALLRAGRFDRQIYVDLPD 384

Query: 172 TSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM---RDESDRL 227
            +     F +   G  +G     +  ++         I     +         +   ++ 
Sbjct: 385 LNDRKEIFLVHMKGLKLGPDVSVDQLARQTPGFSGADIANVCNEAALIAARHDKQAIEKQ 444

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
             MD V R    + +   I+  DE   I   ++G+  
Sbjct: 445 DFMDAVDRIIGGLEKKNKIITEDERRSIAIHEAGHAT 481


>gi|301167025|emb|CBW26604.1| cell division protein [Bacteriovorax marinus SJ]
          Length = 645

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  S  +++S  D+      + G Q+AK  +      L++  +   L   +     PK
Sbjct: 138 MSFGKSKAKLLSSQDKKVTFDDVSGVQEAKEELFEVVDFLKDPKKYTGLGGKI-----PK 192

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VA 110
             LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL +     A
Sbjct: 193 GCLLVGPPGTGKTLLARAVAGEADVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKQA 250

Query: 111 INIVRESRRDEV 122
             I+     D V
Sbjct: 251 PCIIFIDEIDAV 262


>gi|221129815|ref|XP_002154052.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 382

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +      DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 171 KDVAGCEEAKVEIMEFV-NFLKHPDKYLDLGAKI-PKGAILSGPPGTGKTLLAKATAGEA 228

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF+ V  ++F E+ +VG     V  +       A  I+     D V
Sbjct: 229 GVPFLSVSGSEFLEM-FVGVGPARVRDLFAQARKNAPCIIFIDEIDAV 275


>gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|302669466|ref|YP_003829426.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus
           B316]
 gi|302393939|gb|ADL32844.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus
           B316]
          Length = 756

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGEDEAKESLVEVVDFLHNPAKYAKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ YVG    ++ RDL   A   
Sbjct: 248 GEAHVPFYSLAGSDFIEL-YVGVGASRV-RDLFSEASKN 284


>gi|302782403|ref|XP_002972975.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
 gi|300159576|gb|EFJ26196.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
          Length = 894

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 27/217 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +  + +    + L++  R  ++         P  +LL GP G GKT +++ +A
Sbjct: 363 KDVAGIDEVVKELQELVVYLKDPERFARMGTK-----PPHGVLLEGPPGCGKTLLAKAVA 417

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF ++  ++F E+  VG    ++ RDL            R +V   A +  +E  
Sbjct: 418 GEAGVPFYQMAGSEFVEV-LVGVGAARM-RDLF----------LRAKVNRPAVVFIDE-- 463

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLS 193
           +DAL G  +  + +     K        +E +  +     ++  FD   G   +G  N +
Sbjct: 464 IDALGGARSEFHGKRAMDDKTATFHAGTQERETTLNQLLIELDGFDTGKGVIFLGATNRA 523

Query: 194 ELFSKVMGSGRKKKIRM----SVQKCYPELMRDESDR 226
           ++    +    +   R+           E+++  S++
Sbjct: 524 DMLDPALLRPGRFDRRILISPPKASARYEILKVHSEK 560


>gi|302499021|ref|XP_003011507.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
 gi|291175058|gb|EFE30867.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371]
          Length = 718

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 29/184 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK ILLVGP G GKT ++R +A 
Sbjct: 255 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGILLVGPPGTGKTLLARAVAG 309

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L   A                 ++R+E   
Sbjct: 310 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFAQARAKAPAIIFIDELDAIGAKRNERDA 367

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  E+  K L      D+++D+ + D    +
Sbjct: 368 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPELLDKALTRPGRFDRKVDVNLPDVRGRV 427

Query: 177 SNFD 180
              +
Sbjct: 428 DILN 431


>gi|300770524|ref|ZP_07080403.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300763000|gb|EFK59817.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 689

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 204 NDVAGLEEAKQEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 258

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 259 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 292


>gi|153955339|ref|YP_001396104.1| FtsH3 [Clostridium kluyveri DSM 555]
 gi|146348197|gb|EDK34733.1| FtsH3 [Clostridium kluyveri DSM 555]
          Length = 588

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + V   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 156 VAGNEEAKESVKDVVDFLKNPEKYTSYGARM-----PKGIMLYGQPGTGKTLLAKAVAGE 210

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A  PF  V  + F +I YVG    +I R L   A N         V     I+A  +  D
Sbjct: 211 ANVPFYAVSGSDFIQI-YVGVGASRI-RQLFKKARNNSTG---KAVIFIDEIDAIGKKRD 265

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
                  +    +     L +    +++  I V   ++ +   D 
Sbjct: 266 GSNSSGGSDERDQTLNALLTEMSGFNEKKGIVVIAATNRLDMLDP 310


>gi|226942974|ref|YP_002798047.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii
           DJ]
 gi|226717901|gb|ACO77072.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii
           DJ]
          Length = 616

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L    MPK +LLVGP G GKT ++R +A  A 
Sbjct: 157 DVAGVDEAKDELKEIV-DFLKDPQTYGRLGG-RMPKGVLLVGPPGTGKTLLARAVAGEAK 214

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 215 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|331090013|ref|ZP_08338903.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402927|gb|EGG82493.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 675

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 213 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 267

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 268 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 301


>gi|328773728|gb|EGF83765.1| hypothetical protein BATDEDRAFT_8849 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 718

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 33/248 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + ++GQ  A +AVA A+     R              + L +GPTGVGKT + +
Sbjct: 414 LETELKKSVVGQDKAIKAVADAV-----RLSRAGLQAPNRPIASFLFLGPTGVGKTELCK 468

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRES 117
            LAR         ++++++++ E            GY+G +       L +         
Sbjct: 469 SLARFMFDTDRAIVRLDMSEYMERFAISRLVGAPPGYIGHD---DGGQLTEAVRRKPYSI 525

Query: 118 RRDEVREQASINAEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
              +  E+A  +    +L  L     T +   +  FR  +     +  E  ++ +  S  
Sbjct: 526 VLLDEIEKAHRDVSNILLQVLDDGFLTDSQGHKVDFRNTIIIMTSNLAEKLVKSSTESGI 585

Query: 176 ISNFDI---------PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
               +               +  ++   LF+++  +     +++ V +    +    + +
Sbjct: 586 SPETEARVLESVRSHFAPEFINRIDELILFNRLSKTALADIVQVRVAEICKRVEEQHNIK 645

Query: 227 LIDMDTVH 234
           LI  D V 
Sbjct: 646 LIVSDDVQ 653


>gi|300855649|ref|YP_003780633.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           ljungdahlii DSM 13528]
 gi|300435764|gb|ADK15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Clostridium
           ljungdahlii DSM 13528]
          Length = 746

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L   I GQ +A +AV  A+    +R +   +  D     N+L VGPTGVGKT I
Sbjct: 448 KNLDNILKEKIFGQDEAVKAVVRAI----KRSRAGFN-EDNKTVANLLFVGPTGVGKTEI 502

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           S++L+     P I+ +++++ E   V R +  
Sbjct: 503 SKQLSNALNIPLIRFDMSEYQEKHTVARLIGS 534


>gi|298292990|ref|YP_003694929.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
 gi|296929501|gb|ADH90310.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
          Length = 639

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 EDVAGIDEAKSDLTEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|156838711|ref|XP_001643056.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113646|gb|EDO15198.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 786

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + +  +  Q   DL  ++ P+  +L GP G GKT +++  A  A
Sbjct: 304 KDVAGCAEAKQEIMEFV-HFLKNPQRYTDLGAKI-PRGAILSGPPGTGKTLLAKATAGEA 361

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF+ V  ++F E+ +VG    ++ RDL + A
Sbjct: 362 GVPFLSVSGSEFVEM-FVGVGASRV-RDLFEQA 392


>gi|258592316|emb|CBE68625.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 603

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   R +   L++  + Q+L   +     PK +LL+GP G GKT ++R +A 
Sbjct: 154 DVAGADEAKEELREIIEFLKDPPKFQKLGGRI-----PKGVLLMGPPGTGKTLLARAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            A APF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 209 EANAPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKHAPCIIFMDEIDAV 257


>gi|255281636|ref|ZP_05346191.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255267703|gb|EET60908.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G+ +AK A+   +    N  + Q++ A +     PK  LLVGP G GKT +++ +A  
Sbjct: 183 VAGEDEAKEALMEIVNYLHNPEKYQKIGAKM-----PKGALLVGPPGTGKTLLAKAVAGE 237

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  ++F E   G     V  + +   + A  IV     D V ++
Sbjct: 238 ARVPFFSISGSEFVELFAGMGAAKVRDLFKQAGERAPCIVFIDEIDTVGKK 288


>gi|224106305|ref|XP_002314122.1| predicted protein [Populus trichocarpa]
 gi|222850530|gb|EEE88077.1| predicted protein [Populus trichocarpa]
          Length = 792

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 40/214 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 321 DVAGVDEAKEELEEIVEFLRNPDRYTRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 375

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRD 120
            A  PFI    ++F E+ YVG    ++ RDL                  A+   R+ +  
Sbjct: 376 EAEVPFISCSASEFVEL-YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGKYR 433

Query: 121 EVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
            V          ++L  + G  + S        N  +V    LR     D+ + +E  D 
Sbjct: 434 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDR 493

Query: 173 SS-------DISNFDIPGGASVGILNLSELFSKV 199
           +         +S  ++P G  V + +++ + + +
Sbjct: 494 NGREAILKVHVSKKELPLGEDVNLSDIASMTTGL 527


>gi|171688928|ref|XP_001909404.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944426|emb|CAP70537.1| unnamed protein product [Podospora anserina S mat+]
          Length = 771

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 281 DVHGCDEAKEELQELVDFLRNPDKFNTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 335

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L + A
Sbjct: 336 EAGVPFFFMSGSEFDEI-YVGVGAKRV-RELFNAA 368


>gi|152986636|ref|YP_001350793.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
 gi|296391578|ref|ZP_06881053.1| cell division protein FtsH [Pseudomonas aeruginosa PAb1]
 gi|150961794|gb|ABR83819.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
          Length = 642

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVSELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKH 248


>gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 524

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 86  DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 140

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 141 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 173


>gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 630

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 174 DDVAGIEEAKEELQEVVTFLKKPERFTAIGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 231

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 232 GTPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAV 278


>gi|169623150|ref|XP_001804983.1| hypothetical protein SNOG_14806 [Phaeosphaeria nodorum SN15]
 gi|160704926|gb|EAT77998.2| hypothetical protein SNOG_14806 [Phaeosphaeria nodorum SN15]
          Length = 860

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 93/265 (35%), Gaps = 34/265 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +   +   ++  R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 395 DVAGMDEAKQEIMEFVAFLKDPGRFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 449

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQA-- 126
            +G PF  V  ++F E+ +VG    ++ RDL   A       I I         R ++  
Sbjct: 450 ESGVPFFSVSGSEFVEM-FVGVGASRV-RDLFANARKSTPCIIFIDEIDAIGRARSKSNF 507

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       +IL  + G   T         N  +V  K L      D+ I I+   T
Sbjct: 508 GGGNDEREATLNQILTEMDGFNTTEQVVVLAGTNRADVLDKALMRPGRFDRHIGID-RPT 566

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
               +         +      E     + +         +  C  E    E+  ++  + 
Sbjct: 567 MDGRAQIFGVHIKKIITNEDIEFLKGRLAALTPGFSGADIANCVNEAALIETVTMVHFEQ 626

Query: 233 VHRDSIQMVENYGIVFLDEFDKIVA 257
                I  +E   +V   E  K VA
Sbjct: 627 AIERVIGGLEKKSLVLKPEEKKTVA 651


>gi|153814599|ref|ZP_01967267.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756]
 gi|145848093|gb|EDK25011.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756]
          Length = 685

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 311


>gi|154252573|ref|YP_001413397.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans
           DS-1]
 gi|154156523|gb|ABS63740.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans
           DS-1]
          Length = 641

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKDDLTEIVDFLRDPAKFQRLGGRI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|119500238|ref|XP_001266876.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
 gi|119415041|gb|EAW24979.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL
           181]
          Length = 821

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 354 DVHGCDEAKEELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 408

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 409 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFAQARSKSPAIIFIDELDAIGAKRNERDA 466

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+++ +++ D    +
Sbjct: 467 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPQLLDKALTRPGRFDRKVVVDLPDVRGRM 526

Query: 177 SNF 179
              
Sbjct: 527 DIL 529


>gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 667

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+         + G  +A   +      L+   + Q + A +     PK +LL
Sbjct: 152 KMVTKETPK----VTFEDVAGSDEAIEELEEIKDFLKEPAKFQAVGARI-----PKGVLL 202

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 203 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 252


>gi|294505366|ref|YP_003569428.1| cell division protein [Yersinia pestis Z176003]
 gi|294355825|gb|ADE66166.1| cell division protein [Yersinia pestis Z176003]
          Length = 607

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|291414584|ref|XP_002723539.1| PREDICTED: Afg3l1 protein-like [Oryctolagus cuniculus]
          Length = 936

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 448 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKAAAGEAS 505

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 506 VPFITVNGSEFLEM-FVGVGPARVRDMFTMARRNAPCILFIDEIDAIGRK-------RGR 557

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
             L G++   NT     + L + +  +   ++ V   ++     D    
Sbjct: 558 GHLGGQSEQENTLN---QMLVEMDGFNSTTNVVVLAGTNRPDILDPALM 603


>gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 640

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 187 EDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAIA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 242 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 291


>gi|296392854|ref|YP_003657738.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
 gi|296180001|gb|ADG96907.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM
           44985]
          Length = 698

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  R Q L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 171 DVAGADEAVEELYEIKDFLQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQA 258


>gi|94986174|ref|YP_605538.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556455|gb|ABF46369.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 621

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+    V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A
Sbjct: 157 QDVAGCDEAKQDLQEVVDFLRHPERYHQLGARI-----PHGVLLVGPPGSGKTLLAKAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  P+  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 GEAKVPYFSISGSDFVEM-FVGVGAARV-RDLFEQA 245


>gi|58264588|ref|XP_569450.1| ATP-dependent peptidase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134109849|ref|XP_776474.1| hypothetical protein CNBC5280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259150|gb|EAL21827.1| hypothetical protein CNBC5280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225682|gb|AAW42143.1| ATP-dependent peptidase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 782

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 6   NFSPRE--IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
            F P E  IV   D  + G ++AK     +   L+N  +   L   L     PK +LL G
Sbjct: 312 EFEPEEGKIVKFSD--VHGVEEAKAELEEIVEFLKNPEKFSALGGKL-----PKGVLLTG 364

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           P G GKT ++R +A  A  PF+    + F E+ +VG   +++ R+L   A          
Sbjct: 365 PPGTGKTMLARAVAGEAEVPFLFASGSSFDEM-FVGVGAKRV-RELFAAA---------- 412

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
             R++A        LDA+ G   ++  +   ++ L  
Sbjct: 413 --RKKAPAIIFIDELDAI-GSKRSAKDQHYMKQTLNQ 446


>gi|289522997|ref|ZP_06439851.1| cell division protein FtsH [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503540|gb|EFD24704.1| cell division protein FtsH [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 634

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  +   L A      +P+ +LL+G  G GKT ++R +A
Sbjct: 153 DDVAGCDEAKEELHEVIEFLRNPRKFSALGA-----RVPRGVLLLGHPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 208 GEADVPFFSISGSDFVEM-FVGVGAARV-RDLFEQA 241


>gi|289164075|ref|YP_003454213.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
 gi|288857248|emb|CBJ11073.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae
           NSW150]
          Length = 553

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK     V   L+N   + R           +PK +LLVGP G GKT ++R 
Sbjct: 110 QDVAGVDEAKTELMEVVEFLKNPQHYTRIGA-------HIPKGVLLVGPPGTGKTLLARA 162

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 163 VAGEAGVPFFSINGSEFVEM-FVGVGAARV-RDLFIHA 198


>gi|241950643|ref|XP_002418044.1| component of mitochondrial inner membrane m-AAA protease;
           mitochondrial respiratory chain complexes assembly
           protein, putative [Candida dubliniensis CD36]
 gi|223641383|emb|CAX43343.1| component of mitochondrial inner membrane m-AAA protease [Candida
           dubliniensis CD36]
          Length = 941

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK+ V   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 468 KDVAGMAEAKQEVMEFV----KFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 523

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 524 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 556


>gi|163814011|ref|ZP_02205404.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759]
 gi|158450705|gb|EDP27700.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759]
          Length = 649

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           SP+ I + LD+ I GQ +AK+  +  L N                 +N++ VGPTG GKT
Sbjct: 353 SPKRIKAYLDKKIYGQDEAKQVASTLLWNH-----------VNGRARNVVFVGPTGCGKT 401

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVG 96
            I R++ +      +    T  T  G+ G
Sbjct: 402 EIFRQI-KALYKNVVLYNATVLTGEGWKG 429



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 71/210 (33%)

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----------STKYGSINTDH 295
           IV LDE DK+            +  VQ +LL L+E   V               +I+T H
Sbjct: 449 IVVLDEADKV-------FADAYKVTVQNELLKLLEPGKVLLRKDDLIPTDESSFTIDTTH 501

Query: 296 ILFIASGAF-----------HVS-----------------------RPADLL------PE 315
           I ++  GAF           H+S                        P DL+      PE
Sbjct: 502 ISWVFLGAFEDMLKNKEVNSHMSCIGFKSADTICDMTEFKGYESTFTPDDLIKYAHVRPE 561

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESN--LILQYKELMKTEGIILDFTEDSIDALADV 373
           + GR      L++++++DF  +L    ++   + ++ +     G+ + F++D    LA  
Sbjct: 562 LAGRITCISQLQTMHENDFYNLL----NSQGFMDRFTKEF---GVDVKFSDDQKKRLAKT 614

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS 403
           A         +G R L + ++ + +   + 
Sbjct: 615 AAE-----NGLGIRYLISSIKNIADRQLYE 639


>gi|47204953|emb|CAF92797.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 743

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 5   FNF---SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           FN    + + +  ++D   + + G ++AK  +   + N  +  Q    L  ++ PK  +L
Sbjct: 221 FNLSESTAKMMKDKIDVKFKDVAGCEEAKLEILEFV-NFLKNPQQYQKLGAKI-PKGAVL 278

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT +++  A  A  PFI V  ++F E+ +VG    ++  D+  +A
Sbjct: 279 SGPPGTGKTLLAKATAGEANVPFISVNGSEFLEM-FVGVGPARVGDDMFSMA 329


>gi|307719021|ref|YP_003874553.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
 gi|306532746|gb|ADN02280.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
          Length = 870

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 104/274 (37%), Gaps = 19/274 (6%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           +   L R +IGQ++A RAVA A+R      +  + L D   P  + L +GPTGVGKT ++
Sbjct: 569 LEEVLGRRVIGQEEAIRAVADAIR------RNRSGLSDPRRPMGVFLFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           R LA          ++++++++ E   V R +      +             + VR +  
Sbjct: 623 RTLADYLFNDERAMVRIDMSEYMERHAVSRLIGAPPGYV----GYEEGGQLTEAVRRRPY 678

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEIS--DKEIDIEVADTSSDISNFDIPGGA 185
                  ++           +     +L D +    D +  I +  ++            
Sbjct: 679 SVVLFDEVEKAHPDVFNIMLQIFDDGRLTDSQGHVVDFKNTIVIMTSNIGSDLILEADDL 738

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
                 ++ L           +I   +   +  L ++   +++D++ + R + ++ E + 
Sbjct: 739 EKVKPQVNSLLRASFKPEFLNRIDEMIV--FHRLTQEHIYKILDLE-IERLNERLSEQHL 795

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            + +D+  K +    G         ++R +  L+
Sbjct: 796 SIEVDQKAKDILVREGFSPEFGARPLKRTVQRLI 829


>gi|302342199|ref|YP_003806728.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
 gi|301638812|gb|ADK84134.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
          Length = 652

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +A  +   + R+          +PK +LLVG  G GKT ++R +A  A
Sbjct: 162 EDVAGVEEAKEELAEIVE--FLREPKKFTRLGGRIPKGVLLVGSPGTGKTLLARAIAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
           G PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFTQGKKQAPCIIFIDEIDAV 266


>gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 710

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           EI    D  + GQ++AK ++      L    +  ++ A L     PK +LLVGP G GKT
Sbjct: 165 EIKVTFDD-VAGQEEAKESLKEVIDFLNAPAKYTEIGAKL-----PKGVLLVGPPGTGKT 218

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            I++ +A  A  PF  +  + F E+ +VG     V ++ +D V  A  I+     D +
Sbjct: 219 LIAKAVAGEARVPFFSLSGSSFVEM-FVGVGASRVRELFKDAVAKAPCIIFIDEIDAI 275


>gi|94985932|ref|YP_605296.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM
           11300]
 gi|94556213|gb|ABF46127.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis
           DSM 11300]
          Length = 623

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+    V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A
Sbjct: 163 QDVAGCDEAKQDLQEVVDFLRHPDRYHQLGARI-----PHGVLLVGPPGSGKTLLAKAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  P+  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 GEAKVPYFSISGSDFVEM-FVGVGAARV-RDLFEQA 251


>gi|323693185|ref|ZP_08107403.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
 gi|323502668|gb|EGB18512.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
          Length = 687

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 184 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 239 GEAKVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 272


>gi|116515167|ref|YP_802796.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257021|gb|ABJ90703.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 600

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G  +AK  V+     L+   + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 153 DIAGCDEAKEEVSELVEYLKEPKKFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 208 EANVPFFTISGSDFVEM-FVGVGAARVRNMFENSRKYAPCIIFIDEIDAV 256


>gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea]
 gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea]
          Length = 628

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK      +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 NDVAGVEEAKEEFQEVVT----FLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  IV     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIVFIDEIDAV 277


>gi|192361782|ref|YP_001983028.1| ATP-binding protease component ClpA [Cellvibrio japonicus Ueda107]
 gi|190687947|gb|ACE85625.1| ATP-binding protease component ClpA [Cellvibrio japonicus Ueda107]
          Length = 765

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L   + GQ +A   +A A++              E    + L  GPTGVGKT +
Sbjct: 460 RKLDQNLKLTVFGQDEAIETLATAIK-----LSRAGLNSIEKPIGSFLFAGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            R+LA+      ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 515 CRQLAKCMAIDLVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAITKQPHC 569


>gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 652

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K      P+  V      + G ++AK  +      L++  +   + A +     P  +LL
Sbjct: 166 KAKMTMDPK--VKITFEDVAGCEEAKEELVEIIEFLKDPKKFHAIGARI-----PTGVLL 218

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D 
Sbjct: 219 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQ 267


>gi|323485846|ref|ZP_08091181.1| hypothetical protein HMPREF9474_02932 [Clostridium symbiosum
           WAL-14163]
 gi|323400834|gb|EGA93197.1| hypothetical protein HMPREF9474_02932 [Clostridium symbiosum
           WAL-14163]
          Length = 687

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 184 KDVAGEDEAKESLTEIVDFLHNPGKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 239 GEAKVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 272


>gi|290473441|ref|YP_003466308.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
 gi|289172741|emb|CBJ79512.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
          Length = 638

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  V   +   + R+          +PK IL+VGP G GK
Sbjct: 146 LTEDQIKTTF-ADVAGCDEAKEEVGELVE--YLREPGRFQKLGGKIPKGILMVGPPGTGK 202

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 203 TLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 260


>gi|227539016|ref|ZP_03969065.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241219|gb|EEI91234.1| cell division protein FtsH [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 690

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 204 NDVAGLEEAKQEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 258

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 259 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 292


>gi|207346022|gb|EDZ72644.1| YER017Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 738

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|190405578|gb|EDV08845.1| ATP dependent metalloprotease [Saccharomyces cerevisiae RM11-1a]
          Length = 761

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 485

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LRN     +L A +     PK ILLVGP G GKT ++R +A 
Sbjct: 157 DVAGVDEAKAELEEVVEFLRNPAEYGKLGAHI-----PKGILLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 EAGVTFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|307944550|ref|ZP_07659890.1| cell division protease FtsH [Roseibium sp. TrichSKD4]
 gi|307772299|gb|EFO31520.1| cell division protease FtsH [Roseibium sp. TrichSKD4]
          Length = 640

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A
Sbjct: 155 EDVAGIDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLTARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFEPNEGIIIIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR+K +++ ++K
Sbjct: 317 DRQIVVPNPDITGREKILKVHMRK 340


>gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
 gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
          Length = 570

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 10  REIVSELDRYIIGQQDAK-RAVAIALRNRWR---------------RQQLPADLRDELMP 53
           + I S     + G   AK   + ++LR + R               R  L         P
Sbjct: 301 KNIQSVKFEDVAGVDTAKDELLEVSLRKKLRLPLMVFLFFQIVSCLRGALNFRSLGAKFP 360

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K +LL+GP G GKT ++R LA  AG PF     ++F E+ +VGR   +I R+L  VA   
Sbjct: 361 KGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAARI-RELFTVARKH 418


>gi|240851213|ref|YP_002972616.1| cell division protein FtsH [Bartonella grahamii as4aup]
 gi|240268336|gb|ACS51924.1| cell division protein FtsH [Bartonella grahamii as4aup]
          Length = 716

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK+    +   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 156 KDVAGVEEAKQDLQEIVEFLREPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARSVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 260


>gi|151944726|gb|EDN62985.1| ATP dependent metalloprotease [Saccharomyces cerevisiae YJM789]
          Length = 761

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|115525405|ref|YP_782316.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Rhodopseudomonas palustris BisA53]
 gi|115519352|gb|ABJ07336.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris BisA53]
          Length = 804

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L R + GQ  A  ++A +++              E    + L  GPTGVGKT +
Sbjct: 458 KHLETTLKRVVFGQDKAIESLAASIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|325114908|emb|CBZ50465.1| putative ATPase, AAA family domain-containing protein [Neospora
           caninum Liverpool]
          Length = 462

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ +   +  ++ R     D      P+ ILL GPTG GKT ++R +A  + 
Sbjct: 43  DVAGHGEAKKQLRQVI--QFLRSPQAFDALGARAPRGILLEGPTGTGKTLLARAVAGESS 100

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR-ESRRDEVREQASINAEERILDA 137
            PF+ +    F E+ YVG+   ++ R L + A          DE    A    E      
Sbjct: 101 VPFLSISGGSFVEL-YVGQGAARV-RALFEAAKAQAPCVVFIDEFDAIALDRKE------ 152

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            +G+    N  +  RK+ ++ +   +E           +   + P G  
Sbjct: 153 CIGEREQKNKGKQGRKREKEDKEQGEE------KAEMRLDGMERPSGGG 195


>gi|269836808|ref|YP_003319036.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943090|sp|D1C1U7|FTSH1_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|269786071|gb|ACZ38214.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 653

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  + + +    +     A L   + P+ +LLVGP G GKT +SR +A  AG
Sbjct: 164 DVAGVEEAKEEL-VEVVEFLKYPDKFASLGARI-PRGVLLVGPPGTGKTLLSRAVAGEAG 221

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 222 VPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 251


>gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis]
          Length = 601

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L++  +  +L A +     PK +LL GP G GKT ++R +A
Sbjct: 158 EDVAGADEVKEELQEVVDFLKHPKKFVELGAKI-----PKGVLLFGPPGTGKTLLARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|83646751|ref|YP_435186.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
 gi|123739894|sp|Q2SF13|FTSH_HAHCH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|83634794|gb|ABC30761.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
          Length = 619

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ +AKR V   +   + R          L P+ +LL+GP G GKT ++R LA  AG 
Sbjct: 178 VAGQTNAKREVQELVE--YLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEAGV 235

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            F  +  ++F E+ +VG    ++ R L  +A
Sbjct: 236 NFYPMSASEFIEV-FVGVGASRV-RQLFKIA 264


>gi|154247012|ref|YP_001417970.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2]
 gi|154161097|gb|ABS68313.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2]
          Length = 640

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 DDVAGIDEAKSDLTEIVDFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|146329792|ref|YP_001210114.1| ATP-dependent protease FtsH [Dichelobacter nodosus VCS1703A]
 gi|146233262|gb|ABQ14240.1| ATP-dependent protease FtsH [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K      P + +      + G  +AK  VA  +   + R           +P+ +L+VGP
Sbjct: 142 KSKARLIPEDKIKVTFADVAGADEAKEDVAEMVE--FLRAPAKFSRLGGQIPRGVLMVGP 199

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 200 PGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 249


>gi|58699948|ref|ZP_00374530.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533534|gb|EAL57951.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 45

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 42/45 (93%)

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315
           +QRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE
Sbjct: 1   MQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPE 45


>gi|302343613|ref|YP_003808142.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
 gi|301640226|gb|ADK85548.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075]
          Length = 609

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 33/192 (17%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           ++F  S  ++ +E D       + G  +AK     +   L+N  R   L   +     PK
Sbjct: 133 MSFGRSGAKLHAEQDIPTRFADVAGVDEAKFELEEIVNFLKNPERFTSLGGRM-----PK 187

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +LLVGP G GKT +SR +A  AG PF  +  ++F E+ +VG    ++ R+L   A    
Sbjct: 188 GVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEL-FVGVGAARV-RELFAQA---- 241

Query: 115 RESRRDEVREQASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIE 168
                   +E+A        LDAL                +  ++ L + +  D  + + 
Sbjct: 242 --------KEKAPCIIFIDELDALGKARGVAIAGGHDEREQTLQQLLVEMDGFDPRVGVI 293

Query: 169 VADTSSDISNFD 180
           +   ++     D
Sbjct: 294 IMAATNRPEILD 305


>gi|297564862|ref|YP_003683834.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           silvanus DSM 9946]
 gi|296849311|gb|ADH62326.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus
           silvanus DSM 9946]
          Length = 734

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL   I GQ +A + VA A++         A LRD   P    L  GPTGVGKT ++
Sbjct: 440 LEAELSAEIYGQPNAVKEVASAIK------LARAGLRDPHKPIGAYLFAGPTGVGKTELA 493

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           R+LA   G P ++ +++++ E            GYVG     ++ D V    + 
Sbjct: 494 RQLALKLGVPLLRFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTDAVLQNPHC 547


>gi|118404624|ref|NP_001072759.1| AFG3 ATPase family gene 3-like 2 [Xenopus (Silurana) tropicalis]
 gi|116487850|gb|AAI25788.1| hypothetical protein MGC147390 [Xenopus (Silurana) tropicalis]
          Length = 807

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 297 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAVLTGPPGT 354

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 355 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFVLARKNAPCILFIDEIDA 413

Query: 122 VREQ 125
           V  +
Sbjct: 414 VGRK 417


>gi|91228946|ref|ZP_01262843.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
 gi|91187506|gb|EAS73841.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
          Length = 569

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|325924511|ref|ZP_08186030.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325545006|gb|EGD16341.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 646

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  +  +L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 166 DVAGCDEAKEEVSELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|256273767|gb|EEU08692.1| Afg3p [Saccharomyces cerevisiae JAY291]
          Length = 761

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|541748|emb|CAA54091.1| Afg3p [Saccharomyces cerevisiae]
          Length = 761

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|6320854|ref|NP_010933.1| Afg3p [Saccharomyces cerevisiae S288c]
 gi|728820|sp|P39925|AFG3_YEAST RecName: Full=Mitochondrial respiratory chain complexes assembly
           protein AFG3; AltName: Full=ATPase family gene 3
           protein; AltName: Full=Tat-binding homolog 10
 gi|531750|emb|CAA56953.1| YTA10 [Saccharomyces cerevisiae]
 gi|603609|gb|AAB64550.1| Afg3p [Saccharomyces cerevisiae]
 gi|285811641|tpg|DAA07669.1| TPA: Afg3p [Saccharomyces cerevisiae S288c]
          Length = 761

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK+ +   +    N  +  +L A +     P+  +L GP G GKT +++  A  
Sbjct: 290 VAGCDEAKQEIMEFVHFLKNPGKYTKLGAKI-----PRGAILSGPPGTGKTLLAKATAGE 344

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 345 ANVPFLSVSGSEFVEM-FVGVGASRV-RDLFTQA 376


>gi|89095221|ref|ZP_01168144.1| cell division protein FtsH [Oceanospirillum sp. MED92]
 gi|89080518|gb|EAR59767.1| cell division protein FtsH [Oceanospirillum sp. MED92]
          Length = 656

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 11/106 (10%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I +  D  + G ++AK   R +   LR+  + Q+L   +     P+ +L+ G  G GKT
Sbjct: 147 QIKTTFDD-VAGVEEAKEDVRELVDFLRDPGKFQRLGGHI-----PRGVLMAGSPGTGKT 200

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +++ +A  A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 201 LLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKN 244


>gi|330809354|ref|YP_004353816.1| cell division protein ftsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377462|gb|AEA68812.1| putative cell division protein ftsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 608

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  + +   A L   + PK  LLVGP G GKT +++ +A  AG
Sbjct: 157 DVAGIDEAKAELVEIV-SFLKDKAKYARLGAHI-PKGTLLVGPPGTGKTLVAKAIAGEAG 214

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++  DL + A
Sbjct: 215 VPFFSISGSEFVEM-FVGVGAARV-HDLFEQA 244


>gi|303280900|ref|XP_003059742.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458397|gb|EEH55694.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 651

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  +R +   DL  ++ P+  LLVGP G GKT +++  A  +
Sbjct: 192 KDVAGCDEAKAEIMEFV-DFLKRPKKYEDLGAKI-PRGALLVGPPGTGKTLLAKATAGES 249

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 280


>gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
 gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6]
          Length = 354

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 11  EIVSELD-RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV ++    ++GQ++AKR V +    L+N  +  +          P+N+L  GP G GK
Sbjct: 100 EIVKDVSLSDVVGQEEAKRKVKVILEFLKNPEKFGKWA--------PRNVLFYGPPGTGK 151

Query: 67  TAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           T  ++ LA  A  PF+ V+ TK     +G   R + ++      VA  IV     D +
Sbjct: 152 TMTAKALANEAKVPFLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIVFLDEFDSI 209


>gi|307296254|ref|ZP_07576081.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1]
 gi|306878056|gb|EFN09279.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1]
          Length = 860

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ DA +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 564 MEAELGKRVIGQADAVKAVSTAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  +++++++F E   V R
Sbjct: 618 KALAGFLFDDDSAMVRIDMSEFMEKHSVAR 647


>gi|209524767|ref|ZP_03273314.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328]
 gi|209494911|gb|EDZ95219.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328]
          Length = 928

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ+A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 603 QLESHLHRRVIGQQEAVEAVSAAIR------RARAGMKDPGRPIGSFLFMGPTGVGKTEL 656

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689


>gi|209884901|ref|YP_002288758.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Oligotropha
           carboxidovorans OM5]
 gi|209873097|gb|ACI92893.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Oligotropha
           carboxidovorans OM5]
          Length = 793

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L R + GQ  A  A++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEATLKRTVFGQDKAIEALSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|16127456|ref|NP_422020.1| cell division protein FtsH [Caulobacter crescentus CB15]
 gi|221236269|ref|YP_002518706.1| cell division protein FtsH [Caulobacter crescentus NA1000]
 gi|310943123|sp|B8H444|FTSH_CAUCN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|13424908|gb|AAK25188.1| cell division protein FtsH [Caulobacter crescentus CB15]
 gi|220965442|gb|ACL96798.1| cell division protein ftsH [Caulobacter crescentus NA1000]
          Length = 626

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT I+R +A
Sbjct: 151 EDVAGVDEAKEELQEVVDFLKDPAKFQRLGGKI-----PKGALLVGPPGTGKTLIARAVA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 255


>gi|313886703|ref|ZP_07820413.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923865|gb|EFR34664.1| cell division protease FtsH [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 717

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 37/277 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+N  +  +L   +     PK  LLVGP G GKT  ++ +A
Sbjct: 226 DDVAGLHEAKQELQEIVEFLKNPDKYTKLGGKI-----PKGALLVGPPGTGKTLFAKAVA 280

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQASINA 130
             A  PF  +  + F E+ +VG    ++ RDL   A      I+     D V    S NA
Sbjct: 281 GEAHVPFFSISGSDFVEM-FVGVGASRV-RDLFKQAKEKSPCIIFIDEIDAVGRARSKNA 338

Query: 131 -----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                +ER      +L  + G    S        N  ++  K L      D++I +++ D
Sbjct: 339 GFSSNDERENTLNQLLTEMDGFDGNSGVIILAATNRVDILDKALLRAGRFDRQIYVDLPD 398

Query: 172 TSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM---RDESDRL 227
            +     F +   G  +G     +  ++         I     +         +   ++ 
Sbjct: 399 LNDRKEIFLVHMKGLKLGPDVSVDQLARQTPGFSGADIANVCNEAALIAARHDKQAIEKQ 458

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264
             MD V R    + +   I+  DE   I   ++G+  
Sbjct: 459 DFMDAVDRIIGGLEKKNKIITEDERRSIAIHEAGHAT 495


>gi|304406898|ref|ZP_07388552.1| Vesicle-fusing ATPase [Paenibacillus curdlanolyticus YK9]
 gi|304343885|gb|EFM09725.1| Vesicle-fusing ATPase [Paenibacillus curdlanolyticus YK9]
          Length = 522

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 29/237 (12%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAP 80
           GQ+ AKR +  AL             R  + P K ILL GP G GKT +++  A+   + 
Sbjct: 78  GQERAKRELVEALDFL---VNKEEIARLGIRPMKGILLTGPPGTGKTLLAKAAAQYTDSV 134

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG 140
           F+    ++F E+ YVG    ++ RDL   A    R+      +  A I  +E  +D + G
Sbjct: 135 FLAASGSEFVEM-YVGVGASRV-RDLFSDA----RKKATKAGKSAAVIFIDE--IDVIGG 186

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200
           K      RE  +   +     D             I   D P    +   N  E+    +
Sbjct: 187 KRDGGQQREYDQTLNQLLTEMD------------GIHTTDTPRILLMAATNRKEMLDPAL 234

Query: 201 GSGRKKKIRM-----SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
               +    +      V+     L     ++ ++ + +   +      +    L+  
Sbjct: 235 LRPGRFDRHIGVDLPDVKGRLHILHIHAKNKPVESEQLLERAAAETFGFSGAQLESV 291


>gi|163758786|ref|ZP_02165873.1| probable metalloprotease transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162284076|gb|EDQ34360.1| probable metalloprotease transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 645

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A 
Sbjct: 158 DVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKI-----PRGVLLVGPPGTGKTLTARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|29654649|ref|NP_820341.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 493]
 gi|161831494|ref|YP_001597194.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
 gi|29541917|gb|AAO90855.1| cell division protein [Coxiella burnetii RSA 493]
 gi|161763361|gb|ABX79003.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331]
          Length = 647

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A
Sbjct: 156 DDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKM-----PCGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|321474193|gb|EFX85159.1| hypothetical protein DAPPUDRAFT_194014 [Daphnia pulex]
          Length = 657

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 1   MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
           M+ T    +P +I  +  + + G ++AK  +   + N  +  Q   DL  ++ PK  +L 
Sbjct: 152 MESTAKLINPTDIKVQF-KDVAGCEEAKIEIMEFV-NFLKNPQQYMDLGAKI-PKGAILT 208

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRE 116
           GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+  
Sbjct: 209 GPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFI 267

Query: 117 SRRDEVREQ 125
              D V  +
Sbjct: 268 DEIDAVGRK 276


>gi|297181778|gb|ADI17958.1| ATPases with chaperone activity, ATP-binding subunit [uncultured
           Chloroflexi bacterium HF0200_09I09]
          Length = 836

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   LD  +IGQ +A   VA A+     R+        +      + +GPTGVGKT ++
Sbjct: 506 EMEQYLDDRVIGQDEAIGVVAKAV-----RRARAGLKNPKRPIGAFMFLGPTGVGKTYLA 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
             LA          +++++++F E   V R V  
Sbjct: 561 ETLAEFMFGSKDNIVRLDMSEFMEKHTVSRLVGS 594


>gi|254472982|ref|ZP_05086380.1| cell division protease FtsH [Pseudovibrio sp. JE062]
 gi|211957703|gb|EEA92905.1| cell division protease FtsH [Pseudovibrio sp. JE062]
          Length = 641

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A
Sbjct: 155 EDVAGIDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLTARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 246


>gi|121708056|ref|XP_001272015.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
 gi|119400163|gb|EAW10589.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL
           1]
          Length = 789

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 322 DVHGCDEAKEELQELVEFLQNPDRFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 376

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A                 ++R+E   
Sbjct: 377 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFSQARGKAPAIIFIDELDAIGAKRNERDA 434

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+++ + + D    +
Sbjct: 435 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPQLLDKALTRPGRFDRKVTVGLPDVRGRM 494

Query: 177 SNF 179
              
Sbjct: 495 DIL 497


>gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 671

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +A   ++  +       + P   R     +PK +LLVGP G GKT ++R +A 
Sbjct: 189 KDVAGVDEAVEELSEIV----EFLKTPEKFRRLGGRIPKGVLLVGPPGTGKTLLARAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 245 EAGVPFFSLSGSEFVEM-FVGVGAARV-RDLFGQA 277


>gi|15612666|ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
 gi|10172715|dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans
           C-125]
          Length = 813

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A +A++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 503 KMEEILHKRVIGQEEAVKAISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 556

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +R +A         FI+++++++ E            GYVG +
Sbjct: 557 ARAVAETLFGDEDAFIRIDMSEYMEKHATSRLVGSPPGYVGHD 599


>gi|134287770|ref|YP_001109936.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4]
 gi|134132420|gb|ABO60155.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++     +L A      +PK +LLVGP G GKT ++R +A 
Sbjct: 165 DVAGVDEAKDELKEVVSFLKDPRSYGRLGAH-----VPKGVLLVGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESRRDEVREQASINAEERI 134
            AG  F  +  ++F E+ +VG    ++ RDL + A  +       DE+            
Sbjct: 220 EAGVAFFSISGSEFVEM-FVGVGAARV-RDLFEQARQHAPAIVFIDELDSLGRARG---- 273

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             AL G        +   + L + +  D  I + +   ++     D 
Sbjct: 274 -SALPGGGGHDEKEQTLNQLLSELDGFDTSIGVVLLAATNRPEILDP 319


>gi|332974566|gb|EGK11486.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Kingella
           kingae ATCC 23330]
          Length = 757

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ +A  A+  A++              E    + L  GPTGVGKT +
Sbjct: 448 KTLADTLKRKVFGQDNAIEALVSAVK-----MSRSGLGLPEKPIGSFLFSGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA   G P  + +++++ E   V R
Sbjct: 503 AKQLAAELGVPLQRFDMSEYMEAHAVSR 530


>gi|323697697|ref|ZP_08109609.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. ND132]
 gi|323457629|gb|EGB13494.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           desulfuricans ND132]
          Length = 773

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 20/125 (16%)

Query: 4   TFNFSPRE----IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59
               S RE    + S+L   + GQ +A  A+A ++    +R +     +      + LL 
Sbjct: 445 RLTMSDRERLKSLESDLKAVVFGQDEAVAALAKSI----KRSR-AGMRQAGRPVGSFLLT 499

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVD 108
           GPTGVGKT ++R+LA++ G  F++ +++++ E            GYVG +   ++ + V 
Sbjct: 500 GPTGVGKTELARQLAKVLGIGFLRFDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTEGVR 559

Query: 109 VAINI 113
              + 
Sbjct: 560 KKPHC 564


>gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +A   ++  +       + P   R     +PK +LLVGP G GKT ++R +A 
Sbjct: 201 KDVAGVDEAVEELSEIV----EFLKTPEKFRRLGGRIPKGVLLVGPPGTGKTLLARAVAG 256

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 257 EAGVPFFSLSGSEFVEM-FVGVGAARV-RDLFGQA 289


>gi|254567361|ref|XP_002490791.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|238030587|emb|CAY68511.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia pastoris GS115]
 gi|328351173|emb|CCA37573.1| AFG3 family protein [Pichia pastoris CBS 7435]
          Length = 839

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   ++   N  + ++L A +     P+  +L GP G GKT +++  A
Sbjct: 362 DDVAGCDEAKEEIMEFVKFLKNPAKYERLGAKI-----PRGAILSGPPGTGKTLLAKATA 416

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 417 GEAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 450


>gi|13470854|ref|NP_102423.1| endopeptidase Clp ATP-binding chain A [Mesorhizobium loti
           MAFF303099]
 gi|14021597|dbj|BAB48209.1| endopeptidase Clp ATP-binding chain A [Mesorhizobium loti
           MAFF303099]
          Length = 822

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL R + GQ  A  A+  A++              E    + L  GPTGVGKT ++++LA
Sbjct: 470 ELKRVVYGQDTAITALTSAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAKQLA 524

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 525 ASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|260459201|ref|ZP_05807456.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           opportunistum WSM2075]
 gi|259034755|gb|EEW36011.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           opportunistum WSM2075]
          Length = 822

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL R + GQ  A  A+  A++              E    + L  GPTGVGKT ++++LA
Sbjct: 470 ELKRVVYGQDTAITALTSAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAKQLA 524

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 525 ASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
 gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
          Length = 610

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LRN     +L A +     PK ILLVGP G GKT ++R +A 
Sbjct: 157 DVAGVDEAKAELEEVVEFLRNPAEYGKLGAHI-----PKGILLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 EAGVTFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|226312101|ref|YP_002771995.1| ATP-dependent zinc metallopeptidase [Brevibacillus brevis NBRC
           100599]
 gi|226095049|dbj|BAH43491.1| probable ATP-dependent zinc metallopeptidase [Brevibacillus brevis
           NBRC 100599]
          Length = 503

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 95/266 (35%), Gaps = 42/266 (15%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            I GQ+ AK+ +  +L    ++ +     +R     K +LL GP G GKT +++  A   
Sbjct: 74  DIGGQERAKKELKESLDFLVYKDKIEQYGIR---PIKGVLLTGPPGTGKTLMAKAAANYT 130

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ YVG   +++ R+L   A    +       ++ A I  +E  +D 
Sbjct: 131 NSAFVAASGSQFVEM-YVGVGAQRV-RELFQEA----KALAEKNGQDSAIIFIDE--IDV 182

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + GK      RE  +   +     D             ++  D P    +   N  ++  
Sbjct: 183 VGGKRDGQQQREYDQTLNQLLTEMD------------GVATTDKPRILVMAATNRKDMLD 230

Query: 198 KVMGSGRKKKIRMSV----QKCYP-ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
             +    +    +SV    +      L    +++ +  D       Q    +    L+  
Sbjct: 231 AALLRPGRFDRHISVDLPDKPAREQILTIHTANKPLGEDVTLEKVAQETFGFSGAQLESV 290

Query: 253 -------------DKIVARDSGNGIG 265
                        DKI A+  G  + 
Sbjct: 291 ANEAAIYAMRDRQDKITAKHFGYAVD 316


>gi|168044124|ref|XP_001774532.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674087|gb|EDQ60600.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 630

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 92/274 (33%), Gaps = 45/274 (16%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 169 DVAGVDEAKQDFMEVVEFLKRPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            AG PF  V  ++F E+ +VG     V  + +     A  IV     D V  Q       
Sbjct: 224 EAGVPFFAVSGSEFVEM-FVGVGASRVRDLFKKAKANAPCIVFVDEIDAVGRQRGTGIGG 282

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G          A +N  ++    L      D+++ ++V D   
Sbjct: 283 GSDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVTVDVPDVKG 342

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                 +         ++S                  V    P     +   L++   + 
Sbjct: 343 RTEILRVHASNKKFEEDVSIEL---------------VAMRTPGFSGADLANLLNEAAIL 387

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
                          D  D+IVA   G  +  S+
Sbjct: 388 TGRRGKTAISAREIDDSIDRIVAGMEGTVMTDSK 421


>gi|47212474|emb|CAF90270.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 781

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 280 TAKILKDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 337

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 338 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFVMARKNAPCILFIDEIDA 396

Query: 122 VREQ 125
           V  +
Sbjct: 397 VGRK 400


>gi|194335612|ref|YP_002017406.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|310946753|sp|B4SCV5|FTSH_PELPB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|194308089|gb|ACF42789.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 662

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G  +A   +      L N  + Q++   +     PK +LL+GP G GKT +
Sbjct: 205 VKTTFKDVAGVDEAIEELQETVEFLTNPEKFQKIGGKI-----PKGVLLLGPPGTGKTLL 259

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           ++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 260 AKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFEQAKKN 301


>gi|330790803|ref|XP_003283485.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
 gi|325086595|gb|EGC39982.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum]
          Length = 627

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG ++AK  +      LR+ ++           ++PK ILLVGP G GKT +++ LA
Sbjct: 21  NDVIGAEEAKGELQDLVDFLRSPYKYYSKG-----IVIPKGILLVGPPGTGKTLLAKSLA 75

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A   FI +  ++F E  +VG    ++ RDL   A
Sbjct: 76  GEAQVSFITINGSEFEEA-FVGVGARRV-RDLFQTA 109


>gi|300114321|ref|YP_003760896.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299540258|gb|ADJ28575.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 644

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 30/199 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P+ ++D    MPK +LL GP G GKT ++R +A 
Sbjct: 174 DDVAGVEEAKEELREIIT----FLRDPSLIQDLGGRMPKGVLLAGPPGTGKTLLARAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    +  RDL + A            R++A        L
Sbjct: 230 EARVPFFNISGSEFIEL-FVGVGAARA-RDLFEQA------------RQKAPCIIFIDEL 275

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+    A + +     +  R+  ++   ++++  D S+ +              N +E+
Sbjct: 276 DAIGRTRAGAVSMGGHDE--REQTLNQLLVEMDGFDPSAGVVVM--------AATNRAEI 325

Query: 196 FSKVMGSGRKKKIRMSVQK 214
             K +    +   R+ V K
Sbjct: 326 LDKALLRAGRFDRRVLVDK 344


>gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 604

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 253


>gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
 gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
          Length = 604

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 253


>gi|170727044|ref|YP_001761070.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           woodyi ATCC 51908]
 gi|169812391|gb|ACA86975.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           woodyi ATCC 51908]
          Length = 752

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + ++++  LDR     + GQ  A  +++ A+     R        +     + L  GPTG
Sbjct: 444 TDKDMLKNLDRNLKMVVFGQDKAIESLSSAI-----RLSRSGLSGEHKPVGSFLFAGPTG 498

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 499 VGKTEVTSQLAKCLGLNLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPH 558

Query: 113 I 113
            
Sbjct: 559 C 559


>gi|332665521|ref|YP_004448309.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334335|gb|AEE51436.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM
           1100]
          Length = 665

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L+N  +   L   +     PK +LLVGP G GKT +++ +A 
Sbjct: 198 DVAGLDEAKEEVVEVVDFLKNPKKYTALGGKI-----PKGVLLVGPPGTGKTLLAKAVAG 252

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL   A            RE+A        +
Sbjct: 253 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKQA------------REKAPCIVFIDEI 298

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+      +  R  F+    + E +  ++ +E+   S+D     +       IL+ + +
Sbjct: 299 DAI----GRARGRNNFQGGNDERENTLNQLLVEMDGFSTDKGVILMGATNRPDILDTALM 354

Query: 196 FSKVMGSGRKKKIR 209
                         
Sbjct: 355 RPGRFDRQISIDRP 368


>gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
 gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
          Length = 604

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 253


>gi|187776739|ref|ZP_02993212.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
 gi|187775398|gb|EDU39200.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC
           15579]
          Length = 654

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 134/387 (34%), Gaps = 69/387 (17%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM +V + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSVAKSTPGAVGSD 372

Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304
               ++E            +   + G Q  +   +E +      G    D IL     + 
Sbjct: 373 LANIINE----------AALRAVKNGRQEVIQEDLEEAVEVIIAGKEKKDRIL-----SP 417

Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364
              R         G   V   L + +      I+  T   L   Y   + TE   L   E
Sbjct: 418 QEKRQVAF--HEVGHALVAALLPNTDPVHKITIVPRTMGAL--GYTMQLPTEDKYLINKE 473

Query: 365 DSIDALA-----DVAVNLNSTVGDIGA 386
           + +D +        A  +       GA
Sbjct: 474 EMLDKITVMLGGRSAEEVKFNSISTGA 500


>gi|118588321|ref|ZP_01545730.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM
           12614]
 gi|118439027|gb|EAV45659.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM
           12614]
          Length = 639

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A
Sbjct: 155 EDVAGIDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLTARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFEPNEGIIIIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR+K +++ ++K
Sbjct: 317 DRQIVVPNPDITGREKILKVHMRK 340


>gi|310816573|ref|YP_003964537.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25]
 gi|308755308|gb|ADO43237.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25]
          Length = 635

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      LRN  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 154 EDVAGIDEAQEELEEIVEFLRNPQKFSRLGGKI-----PKGALLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 245


>gi|300088219|ref|YP_003758741.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527952|gb|ADJ26420.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 649

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+ V   +     R++  A      +PK +LL+G  G GKT ++R +A  A
Sbjct: 158 NDVAGVDEAKQEVQEIVEFLKSRERFQALGA--RIPKGVLLIGYPGTGKTLLARAIAGEA 215

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 216 GVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|153209334|ref|ZP_01947353.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218758|ref|YP_002305545.1| cell division protein [Coxiella burnetii CbuK_Q154]
 gi|120575405|gb|EAX32029.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013020|gb|ACJ20400.1| cell division protein [Coxiella burnetii CbuK_Q154]
          Length = 650

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A
Sbjct: 156 DDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKM-----PCGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|76154663|gb|AAX26102.2| SJCHGC04886 protein [Schistosoma japonicum]
          Length = 226

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL 47
           P+EI S LDR++IGQ  AK+ +A+ +   + R Q    +
Sbjct: 80  PKEIHSYLDRHVIGQDKAKQILAVQVYAHYNRVQHNRSM 118


>gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
 gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911]
          Length = 662

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            E      + + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT +
Sbjct: 154 EEKKKVRFKDVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLL 211

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 212 ARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|70993660|ref|XP_751677.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|66849311|gb|EAL89639.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           Af293]
 gi|159125401|gb|EDP50518.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus
           A1163]
          Length = 799

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 332 DVHGCDEAKEELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 386

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 387 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFAQARSKSPAIIFIDELDAIGAKRNERDA 444

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+++ +++ D    +
Sbjct: 445 AYVKQTLNQLLTELDGFSQTSGVIIIAATNFPQLLDKALTRPGRFDRKVVVDLPDVRGRM 504

Query: 177 SNF 179
              
Sbjct: 505 DIL 507


>gi|325179545|emb|CCA13943.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 870

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + +  + Q     L  ++ PK  LLVGP G GKT +++  A  A
Sbjct: 352 KDVAGVDEAKKEIMEFV-DFLKNQTRFTKLGAKI-PKGALLVGPPGTGKTLLAKATAGEA 409

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             PF  +  + F E+ +VG     V  + R+    A  IV     D V
Sbjct: 410 SVPFYSISGSDFIEM-FVGVGPSRVRDLFREARANAPCIVFIDEIDAV 456


>gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 604

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 166 DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 221 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 253


>gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 567

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + V   LR+  +  ++ + L     PK +LL+GP G GKT +++ +A 
Sbjct: 153 DVAGVEEAKAEVQEVVDFLRDPQKYSKMGSKL-----PKGVLLIGPPGTGKTMLAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            A A F  V  + FTE+ YVG   +++ +     A         DE+
Sbjct: 208 EANANFFSVHGSDFTEV-YVGVGAKRVRQLFKQAAKQQPSIIFIDEI 253


>gi|156839354|ref|XP_001643369.1| hypothetical protein Kpol_467p23 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113976|gb|EDO15511.1| hypothetical protein Kpol_467p23 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 859

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 103/271 (38%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 382 KDVAGCDEAKEEIMEFVSFLKEPKRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 436

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 437 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTAKENAPSIVFIDEIDAIGKARQKGN 494

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 495 FSGANDERENTLNQLLVEMDGFTTSDHIVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 554

Query: 172 TSSDISNFDIP---GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--R 226
            S   + F++       +  I +L    S +        I     +      R+E+   +
Sbjct: 555 LSGRKAIFEVHLKKIKIAGDIFDLKNRLSALTPGFSGADIANVCNEAALIAARNEARFVK 614

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  KIVA
Sbjct: 615 LEHFEQAIERVIGGVERKSKLLSPEEKKIVA 645


>gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta]
 gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta]
          Length = 631

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 173 NDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  IV     D V R++     
Sbjct: 228 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIG 286

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  +V    L      D+++ ++V D  
Sbjct: 287 GGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVK 346

Query: 174 SDISNFDIP 182
             +   ++ 
Sbjct: 347 GRLEILNVH 355


>gi|323698297|ref|ZP_08110209.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. ND132]
 gi|323458229|gb|EGB14094.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans
           ND132]
          Length = 686

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++  +   R   +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 156 DDVAGVDEAKEELSEIVDFLREPRKFTRLGGRI-----PKGVLLVGGPGTGKTLLARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 211 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFAQGKKNAPCLIFIDEIDAV 260


>gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii
           L2-6]
          Length = 611

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  +      L +  + +++ A +     PK ILLVGP G GKT +++ +A 
Sbjct: 167 DVAGEDEAKENLQEIVDYLHDPKKYEEIGASM-----PKGILLVGPPGTGKTMLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 222 ESNVPFFSISGSEFVEM-FVGMGA-SKVRDLFKQA 254


>gi|197104768|ref|YP_002130145.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Phenylobacterium zucineum HLK1]
 gi|196478188|gb|ACG77716.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Phenylobacterium zucineum HLK1]
          Length = 771

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           +++  +L R + GQ +A   ++ A++         A LRD   P    L  GPTG GKT 
Sbjct: 454 KQLEGDLKRAVYGQDEAIEQLSAAMK------MARAGLRDANKPIGCYLFTGPTGTGKTE 507

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            +R+LA   G   ++ +++++ E            GYVG +   ++ D VD   +
Sbjct: 508 TARQLAGTLGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVDQHPH 562


>gi|312898314|ref|ZP_07757704.1| negative regulator of genetic competence ClpC/MecB [Megasphaera
           micronuciformis F0359]
 gi|310620233|gb|EFQ03803.1| negative regulator of genetic competence ClpC/MecB [Megasphaera
           micronuciformis F0359]
          Length = 809

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+R      +  A L+D   P  + L +GP+GVGKT ++
Sbjct: 498 LEDELHKRVIGQDEAVRAVAKAMR------RSGAGLKDPKRPVGSFLFLGPSGVGKTELA 551

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          I++++++FTE   V R V  
Sbjct: 552 RALAAGLFGDEEAMIRIDMSEFTESHAVARLVGS 585


>gi|317152967|ref|YP_004121015.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943218|gb|ADU62269.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 682

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  ++  +   R   +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 156 DDVAGVDEAKEELSEIVDFLREPRKFTRLGGRI-----PKGVLLVGGPGTGKTLLARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 211 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFAQGKKNAPCLIFIDEIDAV 260


>gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
 gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|37522710|ref|NP_926087.1| cell division protein [Gloeobacter violaceus PCC 7421]
 gi|35213712|dbj|BAC91082.1| cell division protein [Gloeobacter violaceus PCC 7421]
          Length = 626

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   ++      R+ R           +PK +LLVGP G GKT +++ +
Sbjct: 169 DVAGVDEAKGELQEIVQFLKQPERYTRIGA-------KIPKGVLLVGPPGTGKTLLAKAV 221

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 222 AGEAGVPFFSISGSEFVEL-FVGVGAARV-RDLFEQA 256


>gi|253997067|ref|YP_003049131.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
 gi|253983746|gb|ACT48604.1| ATP-dependent metalloprotease FtsH [Methylotenera mobilis JLW8]
          Length = 632

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 156 DVAGCDEAKEEVSELVEFLRDPSKFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKN 246


>gi|239905199|ref|YP_002951938.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Desulfovibrio magneticus RS-1]
 gi|239795063|dbj|BAH74052.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX
           [Desulfovibrio magneticus RS-1]
          Length = 471

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 146/428 (34%), Gaps = 83/428 (19%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI + L   ++GQQ+  R ++++L                L   N+LL+G +G GKT 
Sbjct: 105 PTEINAFLAARVLGQQELLRRISVSLYKHIH----------GLPAPNVLLIGNSGTGKTT 154

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           + + +A              F E       +++    L+  A  +  E   ++   +   
Sbjct: 155 LMQAVA-------------AFYEAH---PELDRFRLMLIINANTLSPEIEGEDRTTRLFK 198

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
             E R      G    + T    +  L +  +   E+D   A  S   +   I    ++ 
Sbjct: 199 KLEARARVTFGG----AMTAAQLKDYLENATVCVDEVDKISARVSGKPNVEGITTQYALL 254

Query: 189 ILNLSELF---SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
            L   E F   + V+  G++    + +          E+ +L+                G
Sbjct: 255 TLLEGEEFLYRATVLEDGQEITREIPL----------ETGKLL-------------FICG 291

Query: 246 IVFLDEFDKIV-----ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300
             F + +D++       RD      VS   V+R     +   +V                
Sbjct: 292 GAFEELYDQVYNCIVNRRDDRRLKEVSE--VERRPDGTMNVRTV---------TRFRLRE 340

Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360
                      ++P+   RF     L+ L + + R IL  + ++ +    E  +  GI L
Sbjct: 341 YLRLADMFAFGMMPQFIARFGAVAMLEELGREELRQILIGSPNSPLRLCLEYFRHMGIRL 400

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-------ASDLQEKTVV 413
             T+ +I A    A   N+    IGAR L+ +   ++    +        A   +  T+ 
Sbjct: 401 LVTDQAITA-IADAAAKNTR---IGARALREIFNGLIAPYEYDPYGSPRYAETDKGPTLT 456

Query: 414 IDAEYVRL 421
           ID E V  
Sbjct: 457 IDLEAVME 464


>gi|325662452|ref|ZP_08151058.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471286|gb|EGC74510.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 666

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 43/271 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQAS 127
             A  PF  +  + F E+ YVG    ++ RDL   A       I I       + R+ A 
Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKEAQAMAPCIIFIDEIDAIGKSRDNAM 282

Query: 128 INAEER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
            + +ER      +L  + G          A +N  E+    L      D+ I ++  D  
Sbjct: 283 GSNDEREQTLNQLLAEMDGFDTDKGLLILAATNRPEILDPALLRPGRFDRRIIVDKPDLK 342

Query: 174 SDISN---------FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-- 222
             +            D         L  S      + +   +    +V+     + ++  
Sbjct: 343 GRVDILKVHAKDVKMDETVDLEAIALATSGAVGSDLANMINEAAINAVKHGRKVVSQEDL 402

Query: 223 -ESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
            E+  ++ +    +D I   E   IV   E 
Sbjct: 403 FEAVEVVLVGKEKKDRIMNAEERRIVSYHEV 433


>gi|253578998|ref|ZP_04856269.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849941|gb|EES77900.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 643

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK     +   L N  + +++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 170 DVAGEDEAKDLLTEIVDYLHNPQKYREIGASM-----PKGALLVGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 225 EAEVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 258


>gi|224059324|ref|XP_002299826.1| predicted protein [Populus trichocarpa]
 gi|222847084|gb|EEE84631.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LRN  R  +L A       P+ +LLVG  G GKT +++ +A 
Sbjct: 332 DVAGIDEAKEELEEIVEFLRNPDRYTRLGA-----RPPRGVLLVGLPGTGKTLLAKAVAG 386

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------ 126
            A  PFI    ++F E+ YVG     V  +       A +I+     D V +        
Sbjct: 387 EAEVPFISCSASEFVEL-YVGMGASRVRDLFTRAKKEAPSIIFIDEIDAVAKSRDGKFRI 445

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G  + S        N  +V    LR     D+ + +E  D +
Sbjct: 446 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDRN 505

Query: 174 S-------DISNFDIPGGASVGILNLSEL 195
                    +S  ++P G  V + +++ +
Sbjct: 506 GREAILKVHVSKKELPLGEDVDLSDIASM 534


>gi|212212273|ref|YP_002303209.1| cell division protein [Coxiella burnetii CbuG_Q212]
 gi|212010683|gb|ACJ18064.1| cell division protein [Coxiella burnetii CbuG_Q212]
          Length = 650

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A
Sbjct: 156 DDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKM-----PCGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 622

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 168 DDVAGVEEAKEELGEVVTFLKQPERFTAVGARI-----PKGVLLIGPPGTGKTLLAKAIA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   D A  ++     D V
Sbjct: 223 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDSAPCLIFIDEIDAV 272


>gi|189521751|ref|XP_001923118.1| PREDICTED: paraplegin [Danio rerio]
          Length = 788

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK   +     L+N  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 300 KDVAGMREAKMEVKEFVDYLKNPDRYLQLGAK-----VPKGSLLLGPPGCGKTLLAKAVA 354

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + ++    A  IV     D V ++
Sbjct: 355 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 407


>gi|262363432|gb|ACY60153.1| cell division protein [Yersinia pestis D106004]
          Length = 573

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + R+          +PK +L+VGP G GKT +++ +A  A 
Sbjct: 116 DVAGCDEAKEEVSELVD--YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 173

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 174 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 219


>gi|260943786|ref|XP_002616191.1| hypothetical protein CLUG_03432 [Clavispora lusitaniae ATCC 42720]
 gi|238849840|gb|EEQ39304.1| hypothetical protein CLUG_03432 [Clavispora lusitaniae ATCC 42720]
          Length = 962

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK+ V   +    +  Q PA        +P+  +L GP G GKT +++  A 
Sbjct: 490 KDVAGMSEAKQEVMEFV----KFLQQPAKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 545

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 546 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 578


>gi|165924052|ref|ZP_02219884.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
 gi|165916511|gb|EDR35115.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334]
          Length = 650

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A
Sbjct: 156 DDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKM-----PCGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|154707633|ref|YP_001424787.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
 gi|154356919|gb|ABS78381.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
          Length = 650

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A
Sbjct: 156 DDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKM-----PCGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 211 GEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
 gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
          Length = 670

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           R + G  + K+ + + +    +  +  ++L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 162 RDVAGADEEKQEL-VEVVEFLKDPRKFSELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171]
 gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|87301141|ref|ZP_01083982.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87284109|gb|EAQ76062.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 626

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 170 DVAGVDEAKTELNEIVDFLKNPERYAAIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 257


>gi|329961929|ref|ZP_08299942.1| putative phage head-tail adaptor [Bacteroides fluxus YIT 12057]
 gi|328531152|gb|EGF58002.1| putative phage head-tail adaptor [Bacteroides fluxus YIT 12057]
          Length = 682

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G   AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 191 KDVAGLAGAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 248

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +A   A   
Sbjct: 249 NVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARAKAAAMGG 307

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 308 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 367

Query: 176 ISNFDIP 182
              F + 
Sbjct: 368 KEVFGVH 374


>gi|261403931|ref|YP_003240172.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|329925503|ref|ZP_08280377.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
 gi|261280394|gb|ACX62365.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10]
 gi|328939786|gb|EGG36126.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
          Length = 689

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSKARLYNEEKKRITFEDVAGADEEKQELVEVVDFLKDPRKFNTVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|62859545|ref|NP_001015906.1| AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene
           [Xenopus (Silurana) tropicalis]
 gi|89268083|emb|CAJ82930.1| AFG3 ATPase family gene 3-like 2 [Xenopus (Silurana) tropicalis]
 gi|213625687|gb|AAI71124.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Xenopus (Silurana)
           tropicalis]
 gi|213627137|gb|AAI70788.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Xenopus (Silurana)
           tropicalis]
          Length = 778

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +   +D   + + G ++AK  +   + N  +  +   DL  ++ P+  +L GP G 
Sbjct: 277 TAKMLKGNIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PRGAMLTGPPGT 334

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 335 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDMFAMARKNAPCILFIDEIDA 393

Query: 122 VREQ 125
           V  +
Sbjct: 394 VGRK 397


>gi|57239570|ref|YP_180706.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579558|ref|YP_197770.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617612|ref|YP_196811.1| cell division protein ftsh-like protein [Ehrlichia ruminantium str.
           Gardel]
 gi|57161649|emb|CAH58578.1| cell division protein FtsH [Ehrlichia ruminantium str. Welgevonden]
 gi|58417224|emb|CAI28337.1| Cell division protein ftsh homolog [Ehrlichia ruminantium str.
           Gardel]
 gi|58418184|emb|CAI27388.1| Cell division protein ftsh homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 611

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   +   ++R + Q+L   +     PK  LL+G  G GKT ++R +A
Sbjct: 156 NDVAGIDEAKEELVEIVDFLKHRQKFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|226946313|ref|YP_002801386.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
 gi|226721240|gb|ACO80411.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
          Length = 637

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKH 245


>gi|331086242|ref|ZP_08335324.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406401|gb|EGG85915.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 666

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 43/271 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQAS 127
             A  PF  +  + F E+ YVG    ++ RDL   A       I I       + R+ A 
Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKEAQAMAPCIIFIDEIDAIGKSRDNAM 282

Query: 128 INAEER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
            + +ER      +L  + G          A +N  E+    L      D+ I ++  D  
Sbjct: 283 GSNDEREQTLNQLLAEMDGFDTDKGLLILAATNRPEILDPALLRPGRFDRRIIVDKPDLK 342

Query: 174 SDISN---------FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-- 222
             +            D         L  S      + +   +    +V+     + ++  
Sbjct: 343 GRVDILKVHAKDVKMDETVDLEAIALATSGAVGSDLANMINEAAINAVKHGRKVVSQEDL 402

Query: 223 -ESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252
            E+  ++ +    +D I   E   IV   E 
Sbjct: 403 FEAVEVVLVGKEKKDRIMNAEERRIVSYHEV 433


>gi|320168906|gb|EFW45805.1| AFG3-like protein 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +   +  +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 327 KDVAGCEEAKVEIMEFV-NFLKHPSVYRELGAKI-PKGAVLSGPPGTGKTLLAKATAGEA 384

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF+ +  ++F E+ +VG    ++ RDL + A
Sbjct: 385 GVPFLSISGSEFLEM-FVGVGSSRV-RDLFEQA 415


>gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 628

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIDEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|91200867|emb|CAJ73922.1| strongly similar to cell division protein FtsH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 637

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 30/223 (13%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  + K+ +      L++  + +++ A      +PK +LL+GP G GKT ++R  A  
Sbjct: 198 VAGMDNVKKELTEVIEFLKDPGKFEKIGAK-----VPKGVLLIGPPGTGKTLLARATAGE 252

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           AG PF  +  ++F E+ +VG     V  + +   D   +I+     D V          R
Sbjct: 253 AGVPFYSISASEFIEM-FVGVGAARVRDMFKKAKDAHPSIIFIDEIDAVG---------R 302

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
              A  G        +   + L + +  D   ++ V   ++     D P     G  +  
Sbjct: 303 TRGAGFGGGHDER-EQTLNQLLSEMDGFDPHTEVIVMAATNRPDVLD-PALLRPGRFDRQ 360

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            +  K     R+K + + V+       +  +D+ +D++ + R 
Sbjct: 361 LVIDKPGWKERRKILEVHVRN------KKLADK-VDLEKIARG 396


>gi|298246220|ref|ZP_06970026.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297553701|gb|EFH87566.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 668

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR   + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 213 DVAGVDEAKNDLVEVVEFLRTPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARAVAG 267

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+  VG    ++ RDL + A
Sbjct: 268 EASVPFFSMSGSEFVEV-LVGVGASRV-RDLFEQA 300


>gi|74212059|dbj|BAE40194.1| unnamed protein product [Mus musculus]
          Length = 584

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 301 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 358

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 359 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 410

Query: 136 DALVGKTATSNTREVF 151
             L G++   NT    
Sbjct: 411 GHLGGQSEQENTLNQM 426


>gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator]
          Length = 776

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNIL 57
           M       P +I    +  + G  +AK+ +      L+N  +   L   L     PK +L
Sbjct: 307 MSHRIEIDPEDIHVTFND-VKGVDEAKQELLNVVEFLKNPGKFSALGGKL-----PKGVL 360

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVR 115
           LVGP G GKT ++R +A  AG PF  V   +F E  +G   R V  + R   +    +V 
Sbjct: 361 LVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKTPCVVF 420

Query: 116 ESRRDEVREQASIN-----AEERILDALVGKTATSNTREVF-------RKKLRDGEISDK 163
               D V  + + +     A + I   L           V        RK L    +   
Sbjct: 421 IDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFRQNEGVIVLGATNRRKDLDKALMRPG 480

Query: 164 EIDIEVADTSSD 175
             D+E+     D
Sbjct: 481 RFDVEIYVNKPD 492


>gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
 gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
          Length = 671

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A   +      L+N  + Q L A +     PK +LL GP G GKT ++R +A
Sbjct: 180 DDVAGANEAVEELQEIKDFLQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 235 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 268


>gi|262279296|ref|ZP_06057081.1| ATPase with chaperone activity [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259647|gb|EEY78380.1| ATPase with chaperone activity [Acinetobacter calcoaceticus
           RUH2202]
          Length = 758

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+  A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALGSAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|163796934|ref|ZP_02190890.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
 gi|159177681|gb|EDP62232.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
          Length = 643

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L++  R Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKTELEEIVEFLKDPQRFQRLGGKI-----PKGCLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|154505838|ref|ZP_02042576.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149]
 gi|153793856|gb|EDN76276.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149]
          Length = 696

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +   + A L     PK  LLVGP G GKT +++ +A
Sbjct: 223 QDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ YVG    ++ RDL   A
Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASRV-RDLFKQA 311


>gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 626

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 94/250 (37%), Gaps = 35/250 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +A  +   ++  R  +L A +     PK +LL GP G GKT +++ +A
Sbjct: 157 DDVAGIDEVKEELAEIVDFLKHPKRYLELGARI-----PKGVLLYGPPGTGKTLLAKAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQA---- 126
             AG PF  +  + F E+ +VG    ++ RDL + A      IV     D V  Q     
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKNSPCIVFIDEIDAVGRQRGAGY 269

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G +A          N  +V    L      D++I I+  D 
Sbjct: 270 GGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRPDVLDPALLRPGRFDRQIVIDRPDL 329

Query: 173 SSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
              ++ F +   G  +      E+ +K         I   + +    L      + I M 
Sbjct: 330 KGRLAIFQVHAKGKPLEPDVDLEVLAKRTPGFTGADIANLMNEAA-LLAARRRKKKISMQ 388

Query: 232 TVHRDSIQMV 241
            V  D+I  V
Sbjct: 389 DV-EDAIDRV 397


>gi|319783683|ref|YP_004143159.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317169571|gb|ADV13109.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 822

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL R + GQ  A  A+  A++              E    + L  GPTGVGKT ++++LA
Sbjct: 470 ELKRVVYGQDTAITALTSAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEVAKQLA 524

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   I+ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 525 ASLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|260654699|ref|ZP_05860189.1| cell division protein FtsH [Jonquetella anthropi E3_33 E1]
 gi|260630715|gb|EEX48909.1| cell division protein FtsH [Jonquetella anthropi E3_33 E1]
          Length = 645

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + RQ          +P+ +LL+G  G GKT ++R  A  A 
Sbjct: 158 DVAGCDEAKEELKEVVD--YLRQPDRFTALGAKVPRGVLLLGQPGTGKTLLARACAGEAD 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            PF     + F E+ +VG    ++ RDL D A    
Sbjct: 216 VPFFSTTGSDFVEM-FVGVGASRV-RDLFDQARKHQ 249


>gi|238881883|gb|EEQ45521.1| hypothetical protein CAWG_03849 [Candida albicans WO-1]
          Length = 846

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK+ V   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 373 KDVAGMAEAKQEVMEFV----KFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 428

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 429 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 461


>gi|255084099|ref|XP_002508624.1| predicted protein [Micromonas sp. RCC299]
 gi|226523901|gb|ACO69882.1| predicted protein [Micromonas sp. RCC299]
          Length = 717

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 216 DVKGVDEAKGELVEIVE--YLRSPAKFTRLGGKLPKGLLLVGPPGTGKTMLARAVAGEAG 273

Query: 79  APFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
            PF     ++F E+ +VG   R V  + R     A  IV     D V
Sbjct: 274 VPFFYTSGSEFEEM-FVGVGARRVRDLFRAAKAAAPCIVFIDEIDAV 319


>gi|239617940|ref|YP_002941262.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
 gi|310943134|sp|C5CES8|FTSH_KOSOT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|239506771|gb|ACR80258.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
          Length = 645

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 3   LTFNFSPREIVSELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN 55
            TF  SP      L        + + G  +A   +  A+   + +           MPK 
Sbjct: 144 FTFTKSPA--KKYLSNDKNVTFKDVAGVDEAIEELQDAVN--YLKNPNAFSQTGARMPKG 199

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ILLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 200 ILLVGPPGTGKTLLARAVAGEANVPFFYISGSDFVEL-FVGVGAARV-RDLFSQA 252


>gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 628

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIDEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
 gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
          Length = 679

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 100/273 (36%), Gaps = 37/273 (13%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 169 DVAGVDEAIEELQEIKEFLQNPAKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---- 126
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V R +     
Sbjct: 224 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQAKANAPAIIFIDEIDAVGRHRGAGLG 281

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D++I I+  D  
Sbjct: 282 GGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIVIDRPDLE 341

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
              +   + G       ++          G       +V      L   +  + I M T+
Sbjct: 342 GRKAILRVHGRGKPFAPDVDLDVIARRTPGFTGADLANVINEAALLTARQDQKQITMATL 401

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVARDSGN 262
             ++I  V    E    V  DE  KI+A   G 
Sbjct: 402 -EEAIDRVMAGPERKSRVMSDEEKKIIAYHEGG 433


>gi|227505883|ref|ZP_03935932.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           striatum ATCC 6940]
 gi|227197511|gb|EEI77559.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           striatum ATCC 6940]
          Length = 852

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL R ++GQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MEAELGRRVVGQKEAVKAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++++++++ E            GYVG +    + + V      +   
Sbjct: 620 ALADFLFDDESAMVRIDMSEYGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRRPYTL--V 677

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 678 LFDEV-EKAHQDVFDVLLQVL 697


>gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 640

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++  + Q+L +       PK +LL+GP G GKT +++ +A
Sbjct: 193 EDVAGVEEAKEELTEIVDFLKSPEKFQRLGSK-----TPKGVLLLGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 248 GEAGVPFFSMSGADFVEM-FVGVGASRV-RDLFEQAKRH 284


>gi|71891886|ref|YP_277616.1| hypothetical protein BPEN_101 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795992|gb|AAZ40743.1| HflB [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 642

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK   + +   LR   R Q+L   +     PK +L+VGP G
Sbjct: 141 LTEDQIKTTF-ADVAGCDEAKEEVKELVDYLREPSRFQKLGGKI-----PKGVLMVGPPG 194

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 195 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 253

Query: 121 EV 122
            V
Sbjct: 254 AV 255


>gi|119775191|ref|YP_927931.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           amazonensis SB2B]
 gi|119767691|gb|ABM00262.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           amazonensis SB2B]
          Length = 753

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A  +++ A+     R        D     + L  GPTGVGKT +
Sbjct: 452 KNLERNLKMVVFGQDKAIESLSAAI-----RLSRSGLGADNKPVGSFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           + +LA+  G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 507 TNQLAKCLGLKLVRFDMSEYMEAHTVSRLIGAPPGYVGYDQGGLLTDAVIKQPHC 561


>gi|326493096|dbj|BAJ85009.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326512046|dbj|BAJ96004.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           +L  + +P + V    + + G  DAK+ +      LRN  +  +L   L     PK ILL
Sbjct: 308 ELNKDVTPEKNVKTF-KDVKGCDDAKKELEEVVEYLRNPTKFTRLGGKL-----PKGILL 361

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVR 115
            G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  IV 
Sbjct: 362 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIVF 420

Query: 116 ESRRDEV 122
               D V
Sbjct: 421 IDEIDAV 427


>gi|285017955|ref|YP_003375666.1| cell division protein ftsh (ATP-dependent zinc metallopeptidase)
           [Xanthomonas albilineans GPE PC73]
 gi|283473173|emb|CBA15679.1| probable cell division protein ftsh (atp-dependent zinc
           metallopeptidase) [Xanthomonas albilineans]
          Length = 644

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPSKFTKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|251794099|ref|YP_003008830.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
 gi|247541725|gb|ACS98743.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2]
          Length = 670

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSRARLYNEEKKRITFEDVAGADEEKQELVEVVDFLKDPRKFNLVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
 gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
          Length = 612

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|311694246|gb|ADP97119.1| cell division protein FtsH [marine bacterium HP15]
          Length = 637

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 11/100 (11%)

Query: 14  SELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           + LD  + G + AKR +A     L++  + + L A     +MPK +LLVGP G GKT ++
Sbjct: 187 ATLDD-VAGIESAKREIAEIIDFLKSPEKYRALGA-----VMPKGVLLVGPPGTGKTLLA 240

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           R +A  A  PF  +  ++F E+ +VG    ++ RD+   A
Sbjct: 241 RAIAGEAEVPFYSISASEFIEM-FVGVGAARV-RDMFKEA 278


>gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
 gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
          Length = 612

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|156382550|ref|XP_001632616.1| predicted protein [Nematostella vectensis]
 gi|156219674|gb|EDO40553.1| predicted protein [Nematostella vectensis]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++ +A  A
Sbjct: 146 KDVAGCEEAKLEIMEFV-NFLKNPQQYHELGAKI-PKGAILSGPPGTGKTLLAKAVAGEA 203

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF+ +  ++F E+ +VG     V  +       A  I+     D V
Sbjct: 204 GVPFLSISGSEFLEM-FVGVGPARVRDLFAQARKNAPCIIFIDEIDAV 250


>gi|49118966|gb|AAH73566.1| LOC443667 protein [Xenopus laevis]
          Length = 769

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  +   DL  ++ P+  +L GP G GKT +++  A  A
Sbjct: 281 KDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PRGAMLTGPPGTGKTLLAKATAGEA 338

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 339 NVPFITVNGSEFLEM-FVGVGPARVRDMFAMARKNAPCILFIDEIDAVGRK 388


>gi|325679414|ref|ZP_08158999.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
 gi|324109011|gb|EGC03242.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8]
          Length = 654

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 112/278 (40%), Gaps = 20/278 (7%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K  +   + +  +  +  A++   + PK +LL+GP G GKT ++R +A  A 
Sbjct: 173 DVAGADEEKEELKEIV-DFLKDGRKYAEIGARI-PKGVLLLGPPGTGKTLLARAVAGEAN 230

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A          +      I+A  R   A 
Sbjct: 231 VPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKSAPSIIFID-----EIDAVGRQRGAG 283

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
           +G       + + +  +      D E  I +A T+    +   P     G  +   L S 
Sbjct: 284 LGGGHDEREQTLNQLLVEMDGFEDNESVIVMAATNRR--DILDPALLRPGRFDRQILVSY 341

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258
               GR++ +++  +     L  D     +D+ T+ + ++          ++E   + AR
Sbjct: 342 PDVKGREEILKVHTKN--KPLAPD-----VDLSTIAKSTVGFTGADLENLVNEASLLAAR 394

Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
              N   ++RE ++   + +V G    +K  S     +
Sbjct: 395 K--NKKAITREDLEEASIKVVAGPEKKSKVVSEQERKL 430


>gi|19112067|ref|NP_595275.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74675997|sp|O43078|SUR2_SCHPO RecName: Full=Protein sur2
 gi|2894288|emb|CAA17029.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 660

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I G  DAK ++  A+   + R +L   LR+ +  + +LL GP G GKT ++R +A  A 
Sbjct: 380 DIAGLDDAKNSLKEAVIYPFLRPELFQGLREPV--QGMLLFGPPGTGKTMLARAVATEAK 437

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   Y+G + E+++R L +VA
Sbjct: 438 ATFFSISASSLT-SKYLG-DSEKLVRALFEVA 467


>gi|68472621|ref|XP_719629.1| hypothetical protein CaO19.9604 [Candida albicans SC5314]
 gi|68472880|ref|XP_719505.1| hypothetical protein CaO19.2057 [Candida albicans SC5314]
 gi|46441325|gb|EAL00623.1| hypothetical protein CaO19.2057 [Candida albicans SC5314]
 gi|46441454|gb|EAL00751.1| hypothetical protein CaO19.9604 [Candida albicans SC5314]
          Length = 846

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK+ V   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 373 KDVAGMAEAKQEVMEFV----KFLQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 428

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 429 EAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 461


>gi|326510597|dbj|BAJ87515.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           +L  + +P + V    + + G  DAK+ +      LRN  +  +L   L     PK ILL
Sbjct: 308 ELNKDVTPEKNVKTF-KDVKGCDDAKKELEEVVEYLRNPTKFTRLGGKL-----PKGILL 361

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G  G GKT +++ +A  AG PF     ++F E+ +VG    ++ R L   A
Sbjct: 362 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRL-RSLFQAA 411


>gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 651

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R +   L    +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAKV-RDLFKQA 266


>gi|253999579|ref|YP_003051642.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
 gi|253986258|gb|ACT51115.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
          Length = 631

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPTKFQKLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGAARVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
 gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|114706805|ref|ZP_01439705.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi
           HTCC2506]
 gi|114537753|gb|EAU40877.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi
           HTCC2506]
          Length = 644

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR   + Q+L   +     P+ +LLVGP G GKT  +R +A 
Sbjct: 159 DVAGVDEAKADLEEIVEFLREPQKFQRLGGKI-----PRGVLLVGPPGTGKTLTARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 214 EAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 249


>gi|71004758|ref|XP_757045.1| hypothetical protein UM00898.1 [Ustilago maydis 521]
 gi|46096849|gb|EAK82082.1| hypothetical protein UM00898.1 [Ustilago maydis 521]
          Length = 860

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G  +AK  +   + N  ++ +    L  ++ P+  +L GP G GKT +++  A  AG 
Sbjct: 372 VAGMDEAKEEIMEFV-NFLKKPEKYEKLGAKI-PRGAILSGPPGTGKTLLAKATAGEAGV 429

Query: 80  PFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           PF+ V  ++F E+ +VG     V  +  +    A  I+     D +
Sbjct: 430 PFLSVSGSEFVEM-FVGVGPSRVRDMFANAKKHAPCIIFIDEIDAI 474


>gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
 gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
          Length = 634

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K+ +   +   ++  +  +L A +     PK +LLVGP G GKT ++R +A
Sbjct: 162 RDVAGADEEKQELVEIVEFLKDPRKFVELGARI-----PKGVLLVGPPGTGKTLLARAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 217 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa]
 gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 44/230 (19%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------ELMPKNILLVGPTGVGKT 67
             + G  +AK  +   +   + R                     +PK +LLVGP G GKT
Sbjct: 222 NDVKGVDEAKAELEEIV--HYLRDPKANTYFPLWSSRFTRLGGKLPKGVLLVGPPGTGKT 279

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            ++R +A  AG PF     ++F E+ +VG    ++ RDL   A          + R    
Sbjct: 280 MLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARRV-RDLFSAA----------KKRSPCI 327

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I  +E  +DA+ G      +R    ++     ++   ++++    +  I           
Sbjct: 328 IFIDE--IDAIGG------SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVI-------- 371

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTV 233
              N  E   K +    +    + V     +   ++M     +++  + V
Sbjct: 372 AATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKILKGEDV 421


>gi|206890631|ref|YP_002249322.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742569|gb|ACI21626.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 740

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 23/285 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + SEL   I GQ +A +AV   ++              +      L  GPTGVGKT +
Sbjct: 437 KNLESELKSVIFGQDEAVKAVVRVIK-----LAKAGLKEPQRPIGCFLFTGPTGVGKTEL 491

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR------ 123
           +R+LA++ G  FI+ +++++ E   V + +      +      ++ E  R          
Sbjct: 492 ARQLAKILGIGFIRFDMSEYMEKHSVAKLIGAPPGYIGFEQGGLLTEQIRKNPHCVLLLD 551

Query: 124 --EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             E+A       +L  +   T T NT      +  D       +   V     + +    
Sbjct: 552 EIEKAHEEIFNILLQVMDYGTLTDNT-----GRKADMRNVILIMTSNVGAREMEKAVIGF 606

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
               S  +    +   ++     + ++   V   +  L  +   +++D   ++  + Q++
Sbjct: 607 GDRTSEQLQKTKDAIERLFSPEFRNRLDAVVT--FNSLPEETVLKIVDK-FINELNEQLL 663

Query: 242 ENYGIVFL-DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
                V + DE  K +A+  G  I      +QR +   ++   V 
Sbjct: 664 SKNIYVEITDETRKWLAQK-GFDIKFGARPLQRLIQKEIKAPLVE 707


>gi|28871631|ref|NP_794250.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854883|gb|AAO57945.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 634

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|330963968|gb|EGH64228.1| cell division protein FtsH [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 634

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|329888406|ref|ZP_08267004.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
 gi|328846962|gb|EGF96524.1| metalloprotease [Brevundimonas diminuta ATCC 11568]
          Length = 650

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 165 DDVAGVDEAKDELQEVVDFLKDPAKFQRLGGKI-----PKGALLVGPPGTGKTLLARAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 220 GEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 269


>gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 633

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|317496223|ref|ZP_07954583.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
 gi|316913798|gb|EFV35284.1| ATP-dependent metallopeptidase HflB [Gemella moribillum M424]
          Length = 689

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K+ +A  +   ++  +  ++ A +     PK +LL GP G GKT ++R +A
Sbjct: 168 RDVAGADEEKQELAEMVEFLKDHRKFTKMGAKI-----PKGVLLEGPPGTGKTLLARAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 223 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFKEAEKN 259


>gi|194476614|ref|YP_002048793.1| cell division protein [Paulinella chromatophora]
 gi|171191621|gb|ACB42583.1| cell division protein [Paulinella chromatophora]
          Length = 620

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  ++  +   +   R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKAELSEIVDFLKTPERYAAIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EANVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 703

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 39/237 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTA 68
           EI    D  + GQ++AK ++   +         PA   +    +PK +LLVGP G GKT 
Sbjct: 165 EIKVTFDD-VAGQEEAKESLKEVID----FLNCPAKYTEIGAKLPKGVLLVGPPGTGKTL 219

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           I++ +A  A  PF  +  + F E+ +VG    ++ R+L   A+             +A  
Sbjct: 220 IAKAVAGEAKVPFFSLSGSSFVEM-FVGVGASRV-RELFKDAV------------AKAPC 265

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS-V 187
                 +DA+             R++  +  +             S++  FD   G   +
Sbjct: 266 IVFIDEIDAIGKSRDNQMQSNDEREQTLNQLL-------------SEMDGFDSSKGVVLL 312

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQM 240
           G  N  E+  K +    +   R+ V     K    +++  +  +I  D V  + I  
Sbjct: 313 GATNRPEVLDKALLRPGRFDRRVIVDRPEFKGREAILKVHAKNIILGDDVDLEEIAR 369


>gi|321248397|ref|XP_003191116.1| ATPase [Cryptococcus gattii WM276]
 gi|317457583|gb|ADV19329.1| ATPase, putative [Cryptococcus gattii WM276]
          Length = 814

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAIS 70
           VS   + + G  +AK  +   +    +  + P         +P+  +L GP G GKT ++
Sbjct: 324 VSVRFKDVAGMDEAKEEIMEFV----KFLKEPLKYEKLGAKIPRGAILSGPPGTGKTLLA 379

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +  A  AG PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 380 KATAGEAGVPFLSVSGSEFVEM-FVGVGPSRV-RDLFANAKKN 420


>gi|302185425|ref|ZP_07262098.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae 642]
          Length = 634

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|254501449|ref|ZP_05113600.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222437520|gb|EEE44199.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 638

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A
Sbjct: 154 EDVAGIDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLTARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 209 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 264

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 265 ---------GLGGGNDEREQTLNQLLVEMDGFEPNEGIIIIAATNRPDVLDPALLRPGRF 315

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR+K +++ ++K
Sbjct: 316 DRQIVVPNPDVTGREKILKVHMRK 339


>gi|330958056|gb|EGH58316.1| peptidase M41, FtsH [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|325002495|ref|ZP_08123607.1| ATP-dependent chaperone ClpB [Pseudonocardia sp. P1]
          Length = 873

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A R V+ A+R      +  A + DE  P    L +GPTGVGKT ++
Sbjct: 565 MEDELGRRVIGQAEAVRVVSDAVR------RARAGIADENRPTGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++++E   V R V
Sbjct: 619 KALAEFLFDDERAMVRVDMSEYSEKHSVARLV 650


>gi|319944196|ref|ZP_08018472.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
 gi|319742491|gb|EFV94902.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
          Length = 641

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 164 DVAGADEAKEEVQEMVDFLRDPSRFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 219 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 254


>gi|313201614|ref|YP_004040272.1| ATP-dependent metalloprotease ftsh [Methylovorus sp. MP688]
 gi|312440930|gb|ADQ85036.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. MP688]
          Length = 631

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPTKFQKLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGAARVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|299769892|ref|YP_003731918.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           DR1]
 gi|298699980|gb|ADI90545.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp.
           DR1]
          Length = 758

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+  A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALGSAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|213966654|ref|ZP_03394805.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|301383164|ref|ZP_07231582.1| cell division protein FtsH [Pseudomonas syringae pv. tomato Max13]
 gi|302063401|ref|ZP_07254942.1| cell division protein FtsH [Pseudomonas syringae pv. tomato K40]
 gi|302133774|ref|ZP_07259764.1| cell division protein FtsH [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928504|gb|EEB62048.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|331016641|gb|EGH96697.1| cell division protein FtsH [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|153952819|ref|YP_001393584.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219853484|ref|YP_002470606.1| hypothetical protein CKR_0141 [Clostridium kluyveri NBRC 12016]
 gi|146345700|gb|EDK32236.1| FtsH1 [Clostridium kluyveri DSM 555]
 gi|219567208|dbj|BAH05192.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 600

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +A  +   +   +  ++ A +     PK +LLVGP G GKT +++ ++ 
Sbjct: 160 DVAGADEEKEELAEIVDFLKQPKKYIEMGARI-----PKGVLLVGPPGTGKTLLAKAISG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 215 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 250


>gi|53804996|ref|YP_113346.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|81682587|sp|Q60AK1|FTSH_METCA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|53758757|gb|AAU93048.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 637

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +      L+N  R Q L   +     PK +LLVGP G GKT ++R +A 
Sbjct: 192 DVAGADEAKQELRETIEFLQNPTRIQSLGGRM-----PKGVLLVGPPGTGKTLLARAVAG 246

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 247 EAGVPFFNISGSEFIEL-FVGVGAARV-RDLFEQA 279


>gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19]
 gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19]
          Length = 627

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 159 QDVAGVEEAKEELQEVVDFLKDPSKFQKLGGKI-----PKGALLVGPPGTGKTLLARAVA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKN 250


>gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
 gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 660

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G Q  K   + V   LR+  R  QL A +     PK ILLVGP G GKT ++R +A
Sbjct: 173 DDVAGYQGVKGEVKEVVDFLRDPSRFSQLGARI-----PKGILLVGPPGTGKTLLARAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF+ V  + F E+ +VG    ++ RDL   A
Sbjct: 228 GEAGVPFMSVSGSDFMEM-FVGVGAARV-RDLFQTA 261


>gi|66047414|ref|YP_237255.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|237798556|ref|ZP_04587017.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|289676017|ref|ZP_06496907.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae FF5]
 gi|63258121|gb|AAY39217.1| Peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|330895313|gb|EGH27651.1| peptidase M41, FtsH [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937939|gb|EGH41726.1| peptidase M41, FtsH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330981083|gb|EGH79186.1| peptidase M41, FtsH [Pseudomonas syringae pv. aptata str. DSM
           50252]
 gi|331021409|gb|EGI01466.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 612

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 628

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 DDVAGIDEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
          Length = 651

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + GQ++AK   R +   L    +  ++ A L     PK  LLVGP G GKT +++ +A  
Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAKV-RDLFKQA 266


>gi|209694184|ref|YP_002262112.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238]
 gi|208008135|emb|CAQ78277.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238]
          Length = 660

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +  D  + G  +AK   + +   LR   R Q+L   +     P  +LLVGP G
Sbjct: 143 MTEEQINTTFDD-VAGCDEAKEDVKELVDYLREPSRFQKLGGKI-----PTGVLLVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT I++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLIAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +A  +   +   R  Q+ A +     PK +LLVGP G GKT +++ +A
Sbjct: 169 KDVAGVEEAKTELAEIVEFLKYPQRYIQIGARI-----PKGVLLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVAFFSISGSEFVEL-FVGAGAARV-RDLFEQA 257


>gi|83768030|dbj|BAE58169.1| unnamed protein product [Aspergillus oryzae]
          Length = 719

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 249 DVHGCDEAKEELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 303

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 304 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTQARSKAPAIIFIDELDAIGAKRNERDA 361

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+ + +++ D    +
Sbjct: 362 AYVKQTLNQLLTELDGFSQTSGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGRM 421

Query: 177 SNF 179
              
Sbjct: 422 DIL 424


>gi|75116392|sp|Q67WJ2|FTSH6_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=OsFTSH6; Flags: Precursor
 gi|51535393|dbj|BAD37263.1| putative chloroplast protease [Oryza sativa Japonica Group]
 gi|51535559|dbj|BAD37477.1| putative chloroplast protease [Oryza sativa Japonica Group]
          Length = 686

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K  F   P+  V+     + G  +AK+    +   L+   +   + A       PK +LL
Sbjct: 207 KAKFQMEPKTGVTF--DDVAGVDEAKQDFQEIVQFLKFPEKFTAVGA-----RTPKGVLL 259

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 260 VGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFDRA 309


>gi|321253386|ref|XP_003192719.1| ATP-dependent peptidase [Cryptococcus gattii WM276]
 gi|317459188|gb|ADV20932.1| ATP-dependent peptidase, putative [Cryptococcus gattii WM276]
          Length = 778

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 6   NFSPRE--IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
            F P E  IV   D  + G ++AK     +   L+N  +   L   L     PK +LL G
Sbjct: 308 EFEPEEGKIVKFSD--VHGVEEAKAELEEIVEFLKNPEKFSALGGKL-----PKGVLLTG 360

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           P G GKT ++R +A  A  PF+    + F E+ +VG   +++ R+L   A          
Sbjct: 361 PPGTGKTMLARAVAGEAEVPFLFASGSSFDEM-FVGVGAKRV-RELFAAA---------- 408

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
             R++A        LDA+ G   ++  +   ++ L  
Sbjct: 409 --RKKAPAIIFIDELDAI-GSKRSAKDQHYMKQTLNQ 442


>gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465]
 gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066]
 gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|34539920|ref|NP_904399.1| cell division protein FtsH [Porphyromonas gingivalis W83]
 gi|34396231|gb|AAQ65298.1| cell division protein FtsH, putative [Porphyromonas gingivalis W83]
          Length = 673

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +    N  +  +L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 194 DVAGLHEAKQEVEEIVHFLKNPSKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  + R   + A  I+     D V
Sbjct: 249 EAHVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAV 297


>gi|117927369|ref|YP_871920.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
 gi|310943112|sp|A0LR74|FTSH_ACIC1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|117647832|gb|ABK51934.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus
           11B]
          Length = 666

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G    K  +A  +       R+RR           +P+ +L+VGP G GKT ++R +
Sbjct: 180 DVAGYDGVKAEIAEVVDFLRSPERYRRAGAA-------IPRGVLMVGPPGTGKTLMARAV 232

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           A  AG PF+ V  + F E+ +VG    ++ RDL + A   
Sbjct: 233 AGEAGVPFLSVTGSSFVEM-FVGVGASRV-RDLFEEARKH 270


>gi|326317393|ref|YP_004235065.1| ATP-dependent metalloprotease FtsH [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374229|gb|ADX46498.1| ATP-dependent metalloprotease FtsH [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 641

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|298373585|ref|ZP_06983574.1| cell division protein FtsH [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274637|gb|EFI16189.1| cell division protein FtsH [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 647

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 33/191 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 192 KDVAGLEGAKEEVQEIVSFLKNPKKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV-REQA--- 126
             A  PF  +  + F E+ +VG    ++ RDL       A  I+     D V R +    
Sbjct: 247 GEAEVPFFSLAGSDFVEM-FVGVGASRV-RDLFQRAKASAPCIIFIDEIDAVGRARGRNP 304

Query: 127 -------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                    N   ++L  + G    S        N  ++  K L      D++I +++ D
Sbjct: 305 NMNVNDERENTLNQLLTEMDGFGTNSGIIILAATNRADILDKALLRAGRFDRQIHVDLPD 364

Query: 172 TSSDISNFDIP 182
                  F++ 
Sbjct: 365 VHERKEIFEVH 375


>gi|294101778|ref|YP_003553636.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
 gi|293616758|gb|ADE56912.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM
           12261]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  ++K  ++     LR+  + + L A      +PK +LL+GP G GKT ++R  A
Sbjct: 156 DDVAGCDESKEELSEVIQFLRDPGKFRALGAK-----VPKGVLLLGPPGTGKTLLARAAA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV 122
             A  PF  V  + F E+ +VG    ++ RDL + A      I+     D V
Sbjct: 211 GEADVPFFSVSGSDFVEM-FVGVGAARV-RDLFEQARKYQPCIIFIDEMDAV 260


>gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
 gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
          Length = 635

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K+ +   +   ++  +  +L A +     PK +LLVGP G GKT ++R +A
Sbjct: 162 RDVAGADEEKQELVEIVEFLKDPRKFVELGARI-----PKGVLLVGPPGTGKTLLARAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 217 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|224419089|ref|ZP_03657095.1| endopeptidase Clp ATP-binding chain A [Helicobacter canadensis MIT
           98-5491]
 gi|253828027|ref|ZP_04870912.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           canadensis MIT 98-5491]
 gi|313142599|ref|ZP_07804792.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT
           98-5491]
 gi|253511433|gb|EES90092.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter
           canadensis MIT 98-5491]
 gi|313131630|gb|EFR49247.1| endopeptidase clp ATP-binding chain a [Helicobacter canadensis MIT
           98-5491]
          Length = 746

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   I GQ  A + +  AL    +R +      +     + L  GP+GVGKT +
Sbjct: 437 KNLQKHLQSRIFGQDLAIKEIVTAL----KRNRAGLGAPN-KPIGSFLFSGPSGVGKTEL 491

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +A+  G  F +++++++ E            GYVG +   I+ +++    + 
Sbjct: 492 AKEIAKALGINFERIDMSEYMEKYSSSGLIGAPAGYVGYDKGGILTEMIKKNPHT 546



 Score = 36.8 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 91/256 (35%), Gaps = 24/256 (9%)

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP---ELMRDESDRLI 228
            +  I +F   G + VG   L++  +K +G   ++       + Y     +         
Sbjct: 471 PNKPIGSFLFSGPSGVGKTELAKEIAKALGINFERIDMSEYMEKYSSSGLIGAPAGYVGY 530

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDK-------IVARDSGNGIGVSREGVQRDLLPLVEG 281
           D   +  + I+    + ++ LDE +K       I  +   N       G   D   ++  
Sbjct: 531 DKGGILTEMIKK-NPHTLLLLDEIEKAHPDVLNIFLQVMDNAKLTDNNGESADFSSVILI 589

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341
            + +       T      +   F+ +   +  PE + R    V    L++++   I+   
Sbjct: 590 MTSNVGSKEAPTLGFTQDSVAKFNSAIKDNFTPEFRNRLDAIVAFNPLSETEILKIVEKN 649

Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM-ERV---L 397
            ++L  Q    +  + I +   + + + LA +         ++GAR L  V+ E++   L
Sbjct: 650 INDLNKQ----IAPKNIHILLDKSAKEQLAKLGY-----NPELGARPLGLVIQEKIKNPL 700

Query: 398 EDISFSASDLQEKTVV 413
            D+       +   V+
Sbjct: 701 SDLMLFGELEKGGEVI 716


>gi|254421263|ref|ZP_05034981.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188752|gb|EDX83716.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 668

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+N  R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 212 EDVAGINEAKEELQEVVTFLKNPERFTAIGARI-----PKGVLLVGPPGTGKTLLAKAIA 266

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 267 GEAGTPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 316


>gi|291279420|ref|YP_003496255.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
 gi|290754122|dbj|BAI80499.1| cell division protein FtsH [Deferribacter desulfuricans SSM1]
          Length = 613

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      L++  R Q+L   +     PK +LLVGP G GKT +++ +A
Sbjct: 154 KDVAGVEEAKEELQEVVEFLKDPHRFQRLGGKI-----PKGVLLVGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL D     A  I+     D V
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQGKKHAPCIIFIDEIDAV 258


>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 371

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 8   SPREIVSELDR-----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +P++I+    +      IIGQ++AK+   I +    +  + P  L  E  PKN+L  GP 
Sbjct: 109 TPKKILRTQFKKAKFSEIIGQEEAKKKCRIIM----KYLENPK-LFGEWAPKNVLFYGPP 163

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LA    + FI V+  +      VG +  ++IR+L   A
Sbjct: 164 GTGKTLMARALATETNSSFILVKAPELIGEH-VG-DASKMIRELYQRA 209


>gi|194674963|ref|XP_612083.4| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
 gi|297485228|ref|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
 gi|296478145|gb|DAA20260.1| AFG3(ATPase family gene 3)-like 1-like [Bos taurus]
          Length = 845

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  LL GP G GKT +++  A  AG
Sbjct: 279 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGALLTGPPGTGKTLLAKATAGEAG 336

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +
Sbjct: 337 VPFITVNGSEFLEM-FVGVGPARVRDMFALARKNAPCILFVDEIDAIGRK 385


>gi|188993907|ref|YP_001928159.1| putative transmembrane AAA-metalloprotease FtsH [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593587|dbj|BAG32562.1| putative transmembrane AAA-metalloprotease FtsH [Porphyromonas
           gingivalis ATCC 33277]
          Length = 673

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +    N  +  +L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 194 DVAGLHEAKQEVEEIVHFLKNPSKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  + R   + A  I+     D V
Sbjct: 249 EAHVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDAV 297


>gi|171059498|ref|YP_001791847.1| ATP-dependent metalloprotease FtsH [Leptothrix cholodnii SP-6]
 gi|170776943|gb|ACB35082.1| ATP-dependent metalloprotease FtsH [Leptothrix cholodnii SP-6]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 161 DVAGCDEAKEEVKELVDFLKDPQKFQKLGGRI-----PRGVLMVGPPGTGKTLLAKSIAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 216 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 642

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 188 EDVAGVEEAKEDLEEVVTFLKQPERFTAVGARI-----PKGVLLIGPPGTGKTLLAKAIA 242

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 243 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 292


>gi|330877240|gb|EGH11389.1| cell division protein FtsH [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|320322535|gb|EFW78628.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|291557137|emb|CBL34254.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 649

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F
Sbjct: 185 IVDFMKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDF 239

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL D A   
Sbjct: 240 VEM-FVGVGASRV-RDLFDQAKKH 261


>gi|149909597|ref|ZP_01898250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp.
           PE36]
 gi|149807301|gb|EDM67254.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp.
           PE36]
          Length = 757

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   +  A+     R        +     + L  GPTGVGKT +
Sbjct: 453 KNLERNLKMVVFGQDPAIEVLTDAI-----RLSRSGLGAETKPIGSFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++RLA++ G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 TQRLAKIMGVELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKQPH 561


>gi|330950313|gb|EGH50573.1| peptidase M41, FtsH [Pseudomonas syringae Cit 7]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|262172287|ref|ZP_06039965.1| cell division protein FtsH [Vibrio mimicus MB-451]
 gi|261893363|gb|EEY39349.1| cell division protein FtsH [Vibrio mimicus MB-451]
          Length = 647

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +  +  + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTFND-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
 gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159]
          Length = 652

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +  +  A L   + P+ +LLVGP G GKT +SR +A  A
Sbjct: 163 DDVAGVDEAKEELQEIVE-FLKYPEKFAALGARI-PRGVLLVGPPGTGKTLLSRAVAGEA 220

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 221 GVPFFSISGSEFVEM-FVGVGASRV-RDLFDQA 251


>gi|145493015|ref|XP_001432504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399616|emb|CAK65107.1| unnamed protein product [Paramecium tetraurelia]
          Length = 780

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L+   + +++ A L     P+  LL GP G GKT +++  A
Sbjct: 342 KDVAGLDEAKLEIKEFVDFLKKPRKYKEMGAKL-----PRGALLAGPPGTGKTMVAKACA 396

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  + F E+ +VG    ++ RDL   A
Sbjct: 397 GEAGVPFFFVSGSDFVEM-FVGVGASRV-RDLFKQA 430


>gi|92117937|ref|YP_577666.1| ATPase AAA-2 [Nitrobacter hamburgensis X14]
 gi|91800831|gb|ABE63206.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrobacter
           hamburgensis X14]
          Length = 799

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  A+  A++              E    + L  GPTGVGKT +
Sbjct: 460 KHLEQTLKRVVFGQDLAIEALTAAIK-----LARAGLREPEKPIGSYLFSGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 AKQLAAAMGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 569


>gi|293607904|ref|ZP_06690207.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828477|gb|EFF86839.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 758

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+  A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALGSAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|303275720|ref|XP_003057154.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461506|gb|EEH58799.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 731

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT +++ +A 
Sbjct: 263 DVAGVDGAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLAKAVAG 317

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 318 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 350


>gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
 gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LR+  +  +L   +     PK  LL+GP G GKT ++R +A
Sbjct: 158 DDVAGIDEAKEELEEIVEFLRDPQKFSRLGGQI-----PKGALLIGPPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 213 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 262


>gi|85375462|ref|YP_459524.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84788545|gb|ABC64727.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 792

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   + GQ  A + ++ A++         A LRD   P  + L  GPTGVGKT ++
Sbjct: 461 LERDLKHVVFGQDPAVKKLSTAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTEVA 514

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R+LA + G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 RQLASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHC 568


>gi|87122217|ref|ZP_01078100.1| ATP-binding protease component ClpA [Marinomonas sp. MED121]
 gi|86162537|gb|EAQ63819.1| ATP-binding protease component ClpA [Marinomonas sp. MED121]
          Length = 750

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   + GQ  A  ++A A++             D+    + L+ GPTGVGKT ++R
Sbjct: 450 LERNLKMVVFGQDQAIESLADAIK-----LSRAGLKADQKPIGSFLMAGPTGVGKTEVTR 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+  G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 505 QLAKQLGVELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKQPHS 557


>gi|189501345|ref|YP_001960815.1| ATPase AAA-2 domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496786|gb|ACE05334.1| ATPase AAA-2 domain protein [Chlorobium phaeobacteroides BS1]
          Length = 440

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ  A +AV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IDQELHKRVIGQDKAVQAVSEAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLAEYLFDDEDAMIRIDMSEYMESHSVSRLV 220


>gi|325122453|gb|ADY81976.1| ATP-binding protease component [Acinetobacter calcoaceticus PHEA-2]
          Length = 758

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L R + GQ +A  A+  A++              +    + +  GPTGVGKT +++
Sbjct: 450 LERDLKRVVFGQDEAITALGSAIK-----LSRAGLKSPDKPVGSFVFAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+L G   ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 505 QLAKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAIHKNPHC 557


>gi|322701840|gb|EFY93588.1| intermembrane space AAA protease IAP-1 [Metarhizium acridum CQMa
           102]
          Length = 740

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 51/237 (21%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N      L A L     PK +LLVGP G GKT ++R +A 
Sbjct: 258 DVHGCDEAKEELQEVVEFLKNPENFSDLGAKL-----PKGVLLVGPPGTGKTLLARAVAG 312

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F EI +VG   +++ R+L   A          + +  A I  +E  L
Sbjct: 313 EAGVPFFYMSGSEFDEI-FVGVGAKRV-RELFAAA----------KAKSPAIIFIDE--L 358

Query: 136 DALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           DA+ G       ++ ++   + L + +  D++  I +                 +G  NL
Sbjct: 359 DAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIII-----------------MGATNL 401

Query: 193 SELFSKVMGSGRKKKIRMSV----QKCYPELMRDESDRL-----IDMDTVHRDSIQM 240
             L  K +    +    ++V     +    +++  + ++     +D+D +   S   
Sbjct: 402 PNLLDKALTRPGRFDRHINVDLPDVRGRLAILKHHAKKIKAAPDVDLDAIAARSPGR 458


>gi|195125565|ref|XP_002007248.1| GI12834 [Drosophila mojavensis]
 gi|193918857|gb|EDW17724.1| GI12834 [Drosophila mojavensis]
          Length = 815

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 320 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 377

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V R++        
Sbjct: 378 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGH 436

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 437 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRA 496

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +  GA    L+ + L  K+
Sbjct: 497 SIFKVHLGALKTELDKNALSRKM 519


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L+N  +   L   L     PK +LLVGP G G
Sbjct: 296 PEEINVTF-EDVKGCDEAKQELKEVVEFLKNPEKFSNLGGKL-----PKGVLLVGPPGTG 349

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 350 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 392


>gi|120611285|ref|YP_970963.1| FtsH peptidase [Acidovorax citrulli AAC00-1]
 gi|120589749|gb|ABM33189.1| membrane protease FtsH catalytic subunit [Acidovorax citrulli
           AAC00-1]
          Length = 641

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|320335120|ref|YP_004171831.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756409|gb|ADV68166.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKTDLTEVVDFLRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG P+  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 EAGVPYFSISGSDFVEM-FVGVGAARV-RDLFEQAKKQ 248


>gi|304413392|ref|ZP_07394865.1| ClpB molecular chaperone [Candidatus Regiella insecticola LSR1]
 gi|304284235|gb|EFL92628.1| ClpB molecular chaperone [Candidatus Regiella insecticola LSR1]
          Length = 857

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL   +IGQ +A  AV+ A+     R+       D     + L +GPTGVGKT + +
Sbjct: 562 IEQELHNRVIGQDEAIEAVSNAI-----RRSRAGLADDNRPTGSFLFLGPTGVGKTELCK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          I++++++F E   V R
Sbjct: 617 ALAVFLFNTDKAMIRIDMSEFMEKHAVSR 645


>gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI]
 gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 718

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 159 DVAGADEALEELQEIKEFLENPGKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|83816311|ref|YP_445161.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|83757705|gb|ABC45818.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
          Length = 686

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K  VA  +    RR Q    L   L P  +LLVGP G GKT +++ +A  A
Sbjct: 217 DDVAGLAEPKEEVAEVVE-FLRRPQKFTRLGGAL-PTGVLLVGPPGTGKTLLAKAVAGEA 274

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 275 GVPFASISGSDFMEM-FVGVGASRV-RDLFDQA 305


>gi|52078564|ref|YP_077355.1| cell-division protein and general stress protein [Bacillus
           licheniformis ATCC 14580]
 gi|52783926|ref|YP_089755.1| hypothetical protein BLi00085 [Bacillus licheniformis ATCC 14580]
 gi|319648593|ref|ZP_08002807.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
 gi|52001775|gb|AAU21717.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus licheniformis ATCC 14580]
 gi|52346428|gb|AAU39062.1| FtsH [Bacillus licheniformis ATCC 14580]
 gi|317389360|gb|EFV70173.1| cell division protease ftsH [Bacillus sp. BT1B_CT2]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + + +  +  +  A+L   + PK +LLVGP G GKT +++  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVDFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLAKACAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
 gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|257482268|ref|ZP_05636309.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624595|ref|ZP_06457549.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646954|ref|ZP_06478297.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320329996|gb|EFW85983.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868239|gb|EGH02948.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987048|gb|EGH85151.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 634

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|170761395|ref|YP_001788658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408384|gb|ACA56795.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 658

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA 253


>gi|58264214|ref|XP_569263.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134107750|ref|XP_777486.1| hypothetical protein CNBB0600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260178|gb|EAL22839.1| hypothetical protein CNBB0600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223913|gb|AAW41956.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 817

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAIS 70
           V+   + + G  +AK  +   +    +  + P         +P+  +L GP G GKT ++
Sbjct: 327 VAVRFKDVAGMDEAKEEIMEFV----KFLKEPLKYEKLGAKIPRGAILSGPPGTGKTLLA 382

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +  A  AG PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 383 KATAGEAGVPFLSVSGSEFVEM-FVGVGPSRV-RDLFANAKKN 423


>gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L]
 gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012]
 gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam]
 gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W]
 gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1]
 gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055]
 gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B]
 gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum]
 gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94]
 gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L]
 gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W]
 gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1]
 gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
 gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f.
           nagariensis]
          Length = 1104

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 24/169 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R V   L+N  +  +L A L     PK +LL GP G GKT +++ +A
Sbjct: 449 KDVKGCDEAKEELREVVEFLKNPGKFTRLGAKL-----PKGVLLTGPPGTGKTLLAKAVA 503

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF     ++F E+ YVG    ++ R L   A          + R    +  +E  
Sbjct: 504 GEAGVPFFYRAGSEFEEL-YVGVGSRRM-RALFAAA----------KKRSPCIVFIDE-- 549

Query: 135 LDALVGKTA--TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
           +DA+ G      ++TR+   + L + +  +    I V   ++   + D 
Sbjct: 550 IDAIGGNRKAWENHTRKTLNQLLVEMDGFESTDGIIVMAATNLPESLDP 598


>gi|291530324|emb|CBK95909.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum 70/3]
          Length = 649

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F
Sbjct: 185 IVDFMKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDF 239

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL D A   
Sbjct: 240 VEM-FVGVGASRV-RDLFDQAKKH 261


>gi|258405490|ref|YP_003198232.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfohalobium retbaense DSM 5692]
 gi|257797717|gb|ACV68654.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfohalobium retbaense DSM 5692]
          Length = 747

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 23/229 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + SEL   + GQ  A   +  ++    +R +  A LR+   P  N LLVGPTGVGKT ++
Sbjct: 441 LDSELKGVVFGQDKAVSVIGQSI----KRSR--AGLREAGKPVGNFLLVGPTGVGKTELA 494

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           ++L+ + G  F++ +++++ E            GYVG +   ++ D V    + V     
Sbjct: 495 KQLSNVLGIHFMRFDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTDAVRKHPHCVL--LL 552

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV E+A  +    +L  +   T T N       +     ++      E++  S      
Sbjct: 553 DEV-EKAHPDLFNILLQVMDYATLTDNNGRKADFRHVVLLMTSNAGAREMSSKSIGFGQE 611

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                 + G+    +LFS    +     +  +       LM    D+ I
Sbjct: 612 SAGEKTNKGVRAAEQLFSPEFRNRLDAIVPFAPLS--QALMEQIVDKFI 658


>gi|240276299|gb|EER39811.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           H143]
          Length = 818

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 355 DVHGCDEAKEELQELVEFLTNPERFNNLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 409

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 410 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 442


>gi|222085851|ref|YP_002544382.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221723299|gb|ACM26455.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 843

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ A++         A LR+   P    +  GPTGVGKT ++
Sbjct: 470 LEQELRSVVYGQDTAIEALSTAIK------LARAGLREPNKPIGCYIFSGPTGVGKTEVA 523

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 524 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHS 577


>gi|85716349|ref|ZP_01047322.1| AAA ATPase [Nitrobacter sp. Nb-311A]
 gi|85696865|gb|EAQ34750.1| AAA ATPase [Nitrobacter sp. Nb-311A]
          Length = 802

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  A+  +++              E      L  GPTGVGKT +
Sbjct: 459 KHLEQTLKRVVFGQDRAIEALTASIK-----LARAGLREPEKPIGAYLFSGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 514 AKQLAEALGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHS 568


>gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 600

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +A  +   +   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 159 EDVAGADEEKAELAEIVDFLKLPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 612

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
 gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
          Length = 551

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+N  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 298 DVHGCDEAKDELQELVDFLKNPEKFSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 352

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L   A
Sbjct: 353 EAGVPFFFMSGSEFDEI-YVGVGAKRV-RELFTAA 385


>gi|197119016|ref|YP_002139443.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088376|gb|ACH39647.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
          Length = 612

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 29/262 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   + N  +  +    L   + PK +LL+GP G GKT ++R +A  A
Sbjct: 160 EDVAGIEEAKDELEEII-NFLKDPKKFTKLGGRI-PKGVLLMGPPGTGKTLLARAIAGEA 217

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV-REQA------ 126
           G PF  +  + F E+ +VG    ++ RDL       A  I+     D V R +       
Sbjct: 218 GVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKSAPCIIFIDEIDAVGRHRGAGLGGG 275

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  + G  +          N  +V    L      D+++ +   D    
Sbjct: 276 HDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPRPDVKGR 335

Query: 176 ISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
                +    +    ++   + ++         +   V +      R E     +ID D 
Sbjct: 336 EMILKVHTKKTPLSPDVDLGVIARGTPGFSGADLSNVVNEAALIAARKEKSMVEMIDFDD 395

Query: 233 VHRDSIQMVENYGIVFLDEFDK 254
                +  VE   +V  DE  K
Sbjct: 396 AKDKVLMGVERRSMVISDEEKK 417


>gi|85713408|ref|ZP_01044407.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
 gi|85692768|gb|EAQ30767.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
          Length = 472

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + ++I+ +LDR     + GQ +A   ++ A+     R        +     + L  GPTG
Sbjct: 225 TDQDILKQLDRNLKMVVFGQDEAIDKLSSAI-----RLSRSGLGNEHTPIGSFLFAGPTG 279

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++++LA+  G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 280 VGKTEVTQQLAKAMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAVIKQPH 339

Query: 113 I 113
            
Sbjct: 340 S 340


>gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241]
 gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241]
          Length = 633

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|189219156|ref|YP_001939797.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943085|sp|B3DV46|FTSH1_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|189186014|gb|ACD83199.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 636

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+N  R + L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 181 DVAGCDEAKYELQEVVDFLKNPSRYRALGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 235

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 236 EAKVPFFSISGSEFVEM-FVGVGAARV-RDLFGQA 268


>gi|148285170|ref|YP_001249260.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong]
 gi|146740609|emb|CAM81263.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong]
          Length = 627

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 156 KDVAGIEEAKDELMEIVDFLRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 211 GEANVPFFHISGSNFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 260


>gi|239832058|ref|ZP_04680387.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ochrobactrum
           intermedium LMG 3301]
 gi|239824325|gb|EEQ95893.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ochrobactrum
           intermedium LMG 3301]
          Length = 824

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LDAELKRVVYGQDLAIEALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|315122873|ref|YP_004063362.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496275|gb|ADR52874.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 660

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L +  + ++L   +     P  +LLVGP G GKT ++R +A
Sbjct: 160 DDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI-----PHGVLLVGPPGTGKTLLARAVA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A N 
Sbjct: 215 GEANVPFFTISGSDFVEL-FVGVGASRV-RDMFEQAKNN 251


>gi|298488449|ref|ZP_07006480.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157074|gb|EFH98163.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 637

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 158 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|283850915|ref|ZP_06368201.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
 gi|283573838|gb|EFC21812.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
          Length = 605

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 38/268 (14%)

Query: 19  YIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R Q+L   +     PK +LL+GP G GKT ++R +A 
Sbjct: 157 DVAGCDEAKAELVEIIDYLKTPERFQRLGGQM-----PKGVLLIGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ +VG    ++ R+L   A            +E+A        L
Sbjct: 212 EAQVPFFSISGSEFVEM-FVGVGAARV-RELFVQA------------KEKAPCIIFIDEL 257

Query: 136 DALVGKTA------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           DA+    A           +   + L + +  D  + + +   ++     D P     G 
Sbjct: 258 DAIGKSRAGAIVGGHDEREQTLNQLLVEMDGFDPRVGVIIMAATNRPETLD-PALLRAGR 316

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
            +   L  K   +GR     + V      L  D     +D+  + R +           +
Sbjct: 317 FDRQVLVDKPDVAGRD--AILRVHAAKIVLGND-----VDLSVIARKTPGFSGADLANVI 369

Query: 250 DEFDKIVARDSGNGIGVS--REGVQRDL 275
           +E   + AR   + +G+    E V R +
Sbjct: 370 NEAALLAARKDKDAVGMPDLEEAVDRLM 397


>gi|262277127|ref|ZP_06054920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [alpha
           proteobacterium HIMB114]
 gi|262224230|gb|EEY74689.1| ATP-dependent Clp protease ATP-binding subunit ClpA [alpha
           proteobacterium HIMB114]
          Length = 763

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L R I GQ  A  A+  +++              E    N L  GPTGVGKT +
Sbjct: 453 KDLDKNLKRLIYGQDHAVDALCSSIK-----LSRSGLRNPEKTIGNYLFNGPTGVGKTEL 507

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++L++  G   ++ ++++F+E            GYVG +    + + ++     
Sbjct: 508 AKQLSKTLGVELVRFDMSEFSEKHTISKLIGSPPGYVGFDQGGQLSESIEKNPYC 562


>gi|308799531|ref|XP_003074546.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
 gi|116000717|emb|CAL50397.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri]
          Length = 636

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 39  RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
           RR      L    +PK  LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG  
Sbjct: 191 RRTTSWKSLIGAKIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVG 249

Query: 99  ---VEQIIRDLVDVAINIVRESRRDEV 122
              V  + +   + A  IV     D V
Sbjct: 250 ASRVRDLFKKAKENAPCIVFVDEIDAV 276


>gi|194337784|ref|YP_002019578.1| ATPase AAA-2 domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310261|gb|ACF44961.1| ATPase AAA-2 domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 440

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 30/246 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + +IGQ++A  AV+ A+    +R +      D+    + + +GPTGVGKT ++R
Sbjct: 135 IEDELHKRVIGQEEAVTAVSEAV----KRSR-AGMGDDKRPIGSFIFLGPTGVGKTELAR 189

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE------- 121
            LA          I+++++++ E   V R V      +       + E+ R +       
Sbjct: 190 TLADYLFDDEDAMIRIDMSEYMEAHTVSRLVGAPPGYVGYEEGGQLTEAVRRKPFAVVLL 249

Query: 122 -VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
              E+A  +    +L  L     T +       K R     +  I +     +  I +  
Sbjct: 250 DEIEKAHPDVFNILLQILDDGRLTDS-------KGRTVNFKNTIIIMTSNIGAQLIQSEM 302

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-----YPELMRDESDR--LIDMDTV 233
                +   + LS L  K+    ++K     + +      +  L R++  +  LI  D +
Sbjct: 303 EMMEGANREIMLSGLQEKLFQLLKQKVKPEFLNRIDEVILFTPLTREDLKKIVLIQFDRI 362

Query: 234 HRDSIQ 239
              +++
Sbjct: 363 KEMAMR 368


>gi|325089842|gb|EGC43152.1| intermembrane space AAA protease [Ajellomyces capsulatus H88]
          Length = 818

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 355 DVHGCDEAKEELQELVEFLTNPERFNNLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 409

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 410 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 442


>gi|320354305|ref|YP_004195644.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320122807|gb|ADW18353.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 643

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 62/278 (22%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E   +L   + G  +AK  V      L+N  +     A +     P  +LL G  G G
Sbjct: 190 PEESKVKL-ADVAGIDEAKEEVEEIVDFLKNPGKFVAAGARI-----PTGVLLYGEPGTG 243

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDE 121
           KT +++ +A  AG PF  +  + F E+ YVG    ++ RDL       A  I+     D 
Sbjct: 244 KTLLAKAIAGEAGVPFFSISGSHFVEM-YVGIGASRV-RDLFNEGKKKAPCIIFIDEIDA 301

Query: 122 V-REQA----------SINAEERILDALVGKTATSN-----------------------T 147
           V R ++                ++L  + G  A  +                        
Sbjct: 302 VGRHRSAGTGSGGNDEREQTLNQLLVEMDGFEANDHVIVIAATNRQDILDPALLRPGRFD 361

Query: 148 REVF--------RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
           R+V         R+K+      + +I  +V      +     PG +   + +L    + +
Sbjct: 362 RQVMVPLPDVGGREKILKVHARNTKIGPDVDW---QVIAKGTPGFSGAQLASLVNEAALL 418

Query: 200 MGSGRKKKIRMSVQKCY--PELMRDESDRLIDMDTVHR 235
           M     + I M + +      LM  E   LI  D   R
Sbjct: 419 MTRKNSQTITMEILEAAKDKVLMGAERRSLIITDKEKR 456


>gi|223889283|ref|ZP_03623870.1| cell division protein FtsH [Borrelia burgdorferi 64b]
 gi|223885204|gb|EEF56307.1| cell division protein FtsH [Borrelia burgdorferi 64b]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|226321254|ref|ZP_03796782.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
 gi|226233286|gb|EEH32037.1| cell division protein FtsH [Borrelia burgdorferi Bol26]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|164656006|ref|XP_001729131.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966]
 gi|159103021|gb|EDP41917.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966]
          Length = 835

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 20  IIGQQDAKRAVAIAL---RN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + G  +AK+ +   +   +N  R+ R           +P+  +L GP G GKT +++  A
Sbjct: 348 VAGMDEAKQEIMEFVSFLKNPERYERLGA-------KIPRGAILSGPPGTGKTLVAKATA 400

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF+ V  ++F E+ +VG     V  +      +A  I+     D +
Sbjct: 401 GEAGVPFLSVSGSEFVEM-FVGVGPSRVRDMFATAKKMAPCIIFVDEIDAI 450


>gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88]
 gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger]
          Length = 803

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 339 DVHGCDEAKEELQELVEFLTNPDRFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 393

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 394 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTQARSKSPAIIFIDELDAIGAKRNERDA 451

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + +S        N  ++  K L      D+++ + + D    +
Sbjct: 452 AYVKQTLNQLLTELDGFSQSSGVIIIAATNYPQLLDKALTRPGRFDRKVTVGLPDVRGRM 511

Query: 177 SNF 179
              
Sbjct: 512 DIL 514


>gi|51209907|ref|YP_063571.1| cell division protein [Gracilaria tenuistipitata var. liui]
 gi|50657661|gb|AAT79646.1| ftsH protease homolog [Gracilaria tenuistipitata var. liui]
          Length = 626

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 173 NDVAGIDEAKEEFEEVVTFLKKPERFTTVGAKI-----PKGVLLIGPPGTGKTLLAKAIA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 228 GEANVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFIDEIDAV 277


>gi|71735142|ref|YP_276318.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555695|gb|AAZ34906.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 637

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 158 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|15595134|ref|NP_212923.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|195942000|ref|ZP_03087382.1| cell division protein (ftsH) [Borrelia burgdorferi 80a]
 gi|216264644|ref|ZP_03436636.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218249315|ref|YP_002375288.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221217602|ref|ZP_03589071.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224533427|ref|ZP_03674020.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225549393|ref|ZP_03770365.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|225550274|ref|ZP_03771233.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|226321220|ref|ZP_03796754.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|310943120|sp|B7J0N5|FTSH_BORBZ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2688712|gb|AAC67120.1| cell division protein (ftsH) [Borrelia burgdorferi B31]
 gi|215981117|gb|EEC21924.1| cell division protein FtsH [Borrelia burgdorferi 156a]
 gi|218164503|gb|ACK74564.1| cell division protein FtsH [Borrelia burgdorferi ZS7]
 gi|221192548|gb|EEE18766.1| cell division protein FtsH [Borrelia burgdorferi 72a]
 gi|224513389|gb|EEF83747.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a]
 gi|225369142|gb|EEG98596.1| cell division protein FtsH [Borrelia burgdorferi 118a]
 gi|225370021|gb|EEG99462.1| cell division protein FtsH [Borrelia burgdorferi 94a]
 gi|226233374|gb|EEH32121.1| cell division protein FtsH [Borrelia burgdorferi 29805]
 gi|312148114|gb|ADQ30773.1| cell division protein FtsH [Borrelia burgdorferi JD1]
          Length = 639

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|289422494|ref|ZP_06424337.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
 gi|289157066|gb|EFD05688.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius
           653-L]
          Length = 625

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
            P E    +   + G  + K  +      L+N  R   L A +     PK IL+VGP G 
Sbjct: 153 KPDENDKVVFDDVAGLNEEKEELQEIVDFLKNPKRYLDLGARI-----PKGILMVGPPGT 207

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT +SR +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 208 GKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|53803870|ref|YP_114285.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|53757631|gb|AAU91922.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA  +   ++  + Q+L   +     P+  L+VGP G GKT ++R +A 
Sbjct: 156 DVAGADEAKEDVAEMVDFLKDPSKFQKLGGKI-----PRGALMVGPPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EARVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 246


>gi|77360664|ref|YP_340239.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875575|emb|CAI86796.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 753

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  +  A+  A+     R        +E    + L  GPTGVGKT
Sbjct: 450 TLKNLDRNLKMLVFGQDQSIDALTSAI-----RLSRSGLANEEKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++++LA+  G  FI+ +++++ E            GYVG     +   L +  I     
Sbjct: 505 EVTKQLAKCMGVEFIRFDMSEYVERHAISRLIGAPPGYVGFEQGGL---LTEAVIKNPHA 561

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 562 VVLLDEIEKAHSDIYNILLQVMDHGTLTDNN 592


>gi|320160812|ref|YP_004174036.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
 gi|319994665|dbj|BAJ63436.1| chaperone ClpB [Anaerolinea thermophila UNI-1]
          Length = 861

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + ++GQ +A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 562 EMEERLHQRVVGQDEAVRAVSNAIR------RARAGLQDPNRPIGSFIFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I+++++++ E   V R
Sbjct: 616 ARALAEFMFDDEHAMIRIDMSEYQEKHTVSR 646


>gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 672

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK  +      L +  R  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 175 DVAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 230 EAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 262


>gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 631

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 175 DDVAGIEEAKEELQEVVTFLKQPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 230 GEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 279


>gi|169335541|ref|ZP_02862734.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258279|gb|EDS72245.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM
           17244]
          Length = 604

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPK 54
           +TF  S  ++ ++ D+      + G  + K  +A     L++  R   L A +     PK
Sbjct: 123 MTFGKSKAKLYTKSDKQYTFADVAGADEEKEELAEVVDFLKSPRRYIDLGARI-----PK 177

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LLVGP G GKT +++  A  A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 178 GVLLVGPPGTGKTLLAKATAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 234


>gi|332004754|gb|AED92137.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 709

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L+   +   L A +     PK +LL GP G GKT +++ +A
Sbjct: 222 EDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKI-----PKGVLLTGPPGTGKTLLAKAIA 276

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 277 GEAGVPFFSLSGSEFIEM-FVGVGASRA-RDLFNKA 310


>gi|320537708|ref|ZP_08037634.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema
           phagedenis F0421]
 gi|320145445|gb|EFW37135.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema
           phagedenis F0421]
          Length = 795

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+   +   + GQ++A RAVA A+    +R +     ++     N+   GPTGVGKT +
Sbjct: 491 KELEQHIAAKVFGQEEAVRAVAQAV----KRSRAGFRAKN-KPVANLFFAGPTGVGKTEL 545

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +R LA   G    + +++++ E            GYVG +   ++ D +    +
Sbjct: 546 ARSLAEELGIALHRFDMSEYQEKHTVSRLIGSPPGYVGFDEGGLLTDAIRKQPH 599


>gi|300120900|emb|CBK21142.2| m-AAA (Yta10) [Blastocystis hominis]
          Length = 625

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 41/264 (15%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +      L+N  +   L A L     PK  +L GP G GKT +++  A
Sbjct: 170 KDVAGIDEAKQEIMEFIDFLKNGDKYAALGAKL-----PKGAILSGPPGTGKTLLAKAAA 224

Query: 75  RLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
             A  PF+ +  + F E   G   + V ++  +    A  IV     D V ++       
Sbjct: 225 GEANVPFLSISGSDFVEVFAGLGAKRVRELFAEARKNAPCIVFIDEIDAVGKKRGE---- 280

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                  G + +++ RE    ++         I+++       I+ F           N 
Sbjct: 281 -------GFSGSNDEREQTLNQI--------LIEMDGFKPRDGITIF--------AGTNR 317

Query: 193 SELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
            ++    +    +    ++V     +   ++ +    +++        + Q+ E      
Sbjct: 318 MDILDPALLRAGRFDRHIAVDKPDLEGRKQISKIYLSKVVLDGDTDEMAQQLAELTPGYT 377

Query: 249 LDEFDKIVARDSGNGIGVSREGVQ 272
             + + IV   +   I    E VQ
Sbjct: 378 GADINNIVNEAAIIAIRNKHEKVQ 401


>gi|291568483|dbj|BAI90755.1| ClpB protein [Arthrospira platensis NIES-39]
          Length = 928

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 603 QLESHLHRRVIGQQQAVEAVSAAIR------RARAGMKDPGRPIGSFLFMGPTGVGKTEL 656

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689


>gi|258623148|ref|ZP_05718159.1| cell division protein FtsH [Vibrio mimicus VM573]
 gi|258584568|gb|EEW09306.1| cell division protein FtsH [Vibrio mimicus VM573]
          Length = 647

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +  +  + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTFND-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|258625326|ref|ZP_05720226.1| cell division protein FtsH [Vibrio mimicus VM603]
 gi|258582392|gb|EEW07241.1| cell division protein FtsH [Vibrio mimicus VM603]
          Length = 647

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +  +  + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTFND-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|237796782|ref|YP_002864334.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
 gi|229261886|gb|ACQ52919.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str.
           657]
          Length = 658

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|168182032|ref|ZP_02616696.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
 gi|182674745|gb|EDT86706.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf]
          Length = 658

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205]
          Length = 645

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 30/190 (15%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 182 DDVAGVEEAKQDLQEVVTFLKTPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 236

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 237 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGVG 295

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++V D  
Sbjct: 296 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRADVLDSALLRPGRFDRQVQVDVPDIK 355

Query: 174 SDISNFDIPG 183
             ++  ++  
Sbjct: 356 GRLAVLNVHC 365


>gi|294507044|ref|YP_003571102.1| Cell division protein FtsH [Salinibacter ruber M8]
 gi|310943088|sp|D5H7Z5|FTSH1_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|294343372|emb|CBH24150.1| Cell division protein FtsH [Salinibacter ruber M8]
          Length = 686

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K  VA  +    RR Q    L   L P  +LLVGP G GKT +++ +A  A
Sbjct: 217 DDVAGLAEPKEEVAEVVE-FLRRPQKFTRLGGAL-PTGVLLVGPPGTGKTLLAKAVAGEA 274

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 275 GVPFASISGSDFMEM-FVGVGASRV-RDLFDQA 305


>gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 585

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 107 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 161

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 162 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 205


>gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
 gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
          Length = 612

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 612

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
 gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
          Length = 612

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|194246667|ref|YP_002004306.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
 gi|310943097|sp|B3QZS3|FTSH2_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|193807024|emb|CAP18460.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali]
          Length = 686

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 14  SELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
               + I G  + K  ++     L+N ++ + + A +     PK +LL GP GVGKT ++
Sbjct: 228 EFTFKDIAGADEEKEEMSELINFLKNPFKYEAMGARI-----PKGVLLYGPPGVGKTLLA 282

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEVREQ 125
           + +A  A  PF  V  + F E+ YVG    +I R L       A  I+     + +  Q
Sbjct: 283 KAVAGEAKVPFFAVSGSDFIEV-YVGLGASRI-RKLFNEAKQNAPCIIFIDEIETISHQ 339


>gi|167751542|ref|ZP_02423669.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
 gi|167655350|gb|EDR99479.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702]
          Length = 661

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   ++N  + Q+L A +     P+ +LL+GP G GKT +++ +A  A  PF  +  + F
Sbjct: 197 IVDFMKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDF 251

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL D A   
Sbjct: 252 VEM-FVGVGASRV-RDLFDQAKKH 273


>gi|88608851|ref|YP_506309.1| ATP-dependent metalloprotease FtsH [Neorickettsia sennetsu str.
           Miyayama]
 gi|88601020|gb|ABD46488.1| ATP-dependent metalloprotease FtsH [Neorickettsia sennetsu str.
           Miyayama]
          Length = 636

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A  +   R   + Q+L   +     PK  LL+GP G GKT +++ +A 
Sbjct: 158 DVAGIDEAKEELAEIVEFLREPKKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCLIFIDEIDAV 261


>gi|39996282|ref|NP_952233.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983162|gb|AAR34556.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|298505295|gb|ADI84018.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 617

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           ++P   V      + G ++ K   + +   LR+  + Q++        +PK +LLVGP G
Sbjct: 164 YTPSAKVKVTFDDVAGMENPKMELKEIVDYLRDPKKFQRIGGK-----VPKGVLLVGPPG 218

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT ++R +A  A   F+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 219 TGKTLLARAVAGEADVTFLSISASQFIEM-FVGVGAGRV-RDLFATA 263


>gi|84683911|ref|ZP_01011813.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667664|gb|EAQ14132.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Rhodobacterales bacterium HTCC2654]
          Length = 873

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A RAVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 562 MEEGLHKRVIGQDQAVRAVANAVR------RARAGLNDEARPLGSFLFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 616 KAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 645


>gi|317056315|ref|YP_004104782.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
 gi|315448584|gb|ADU22148.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7]
          Length = 663

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K  +   + +  +  +  A++   + PK +LL+GP G GKT ++R +A  A 
Sbjct: 173 DVAGADEEKEELKEIV-DFLKDNRKYAEIGARI-PKGVLLLGPPGTGKTLLARAVAGEAN 230

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 231 VPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 260


>gi|182414548|ref|YP_001819614.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|177841762|gb|ACB76014.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 671

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     L++  +  ++   +     PK IL+VGP G GKT +++ +A 
Sbjct: 187 DVAGCDEAKEEVSEVVEFLKDPKKFTKMGGKI-----PKGILMVGPPGTGKTLLAKAVAG 241

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 242 EADVPFFSISGSDFVEM-FVGVGASRVRDMFEQGRKSAPCLIFIDEIDAV 290


>gi|153009351|ref|YP_001370566.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561239|gb|ABS14737.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ochrobactrum
           anthropi ATCC 49188]
          Length = 824

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LDAELKRVVYGQDLAIEALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|241763938|ref|ZP_04761980.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
 gi|241366761|gb|EER61202.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN]
          Length = 639

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|323142076|ref|ZP_08076924.1| ATP-dependent chaperone protein ClpB [Phascolarctobacterium sp. YIT
           12067]
 gi|322413463|gb|EFY04334.1| ATP-dependent chaperone protein ClpB [Phascolarctobacterium sp. YIT
           12067]
          Length = 846

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L  ++IGQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 553 LEEILHEHVIGQDEAVKAVSEAV------IRARAGIKDPNRPIGSFIFLGPTGVGKTELA 606

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA +        ++++++++ E   V R
Sbjct: 607 KTLAEVLFDDERNMVRIDMSEYMEKHTVSR 636


>gi|319763182|ref|YP_004127119.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans
           BC]
 gi|330825245|ref|YP_004388548.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
 gi|317117743|gb|ADV00232.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           BC]
 gi|329310617|gb|AEB85032.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans
           K601]
          Length = 653

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 175 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 230 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 278


>gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
          Length = 476

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK  ++  +    N  +   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 38  DVAGEDEAKENLSEIVDYLHNPKKYTDVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 92

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 93  ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFGQA 125


>gi|163797887|ref|ZP_02191831.1| ATPase with chaperone activity, ATP-binding subunit [alpha
           proteobacterium BAL199]
 gi|159176849|gb|EDP61417.1| ATPase with chaperone activity, ATP-binding subunit [alpha
           proteobacterium BAL199]
          Length = 783

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  ++A A++              E    + L  GPTGVGKT ++R
Sbjct: 458 LERDLKTVVFGQDSAIASLASAIK-----LARAGLRESEKPIGSYLFSGPTGVGKTEVAR 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   I+ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 513 QLALTLGVELIRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDQIDQHPHC 565


>gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
 gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
          Length = 612

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
 gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
          Length = 582

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 104 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 158

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 159 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 202


>gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
 gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM
           20603]
          Length = 677

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 6   NFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
             + +++       + G  +A    R +   L    + Q + A +     PK +LL GP 
Sbjct: 155 KLANKDMPQVTFSDVAGADEAVEELREIKEFLSEPAKFQAVGAKI-----PKGVLLYGPP 209

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 210 GTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFQQA 255


>gi|170757175|ref|YP_001782967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169122387|gb|ACA46223.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B1 str.
           Okra]
          Length = 658

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|111115623|ref|YP_710241.1| cell division protein [Borrelia afzelii PKo]
 gi|110890897|gb|ABH02065.1| cell division protein [Borrelia afzelii PKo]
          Length = 639

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|78356558|ref|YP_388007.1| FtsH peptidase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218963|gb|ABB38312.1| membrane protease FtsH catalytic subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 665

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L N  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 153 DDVAGVDEAKEELTEVVDFLSNPKKFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAV 257


>gi|78223097|ref|YP_384844.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194352|gb|ABB32119.1| membrane protease FtsH catalytic subunit [Geobacter metallireducens
           GS-15]
          Length = 608

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 153 EDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCIIFIDEIDAV 257


>gi|330807477|ref|YP_004351939.1| cell division protein FtsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375585|gb|AEA66935.1| Putative cell division protein FtsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 636

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|312149056|gb|ADQ29127.1| cell division protein FtsH [Borrelia burgdorferi N40]
          Length = 639

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|225551709|ref|ZP_03772653.1| cell division protein FtsH [Borrelia sp. SV1]
 gi|225371736|gb|EEH01162.1| cell division protein FtsH [Borrelia sp. SV1]
          Length = 639

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|189184490|ref|YP_001938275.1| FtsH protein [Orientia tsutsugamushi str. Ikeda]
 gi|189181261|dbj|BAG41041.1| FtsH protein [Orientia tsutsugamushi str. Ikeda]
          Length = 627

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 156 KDVAGIEEAKDELMEIVDFLRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 211 GEANVPFFHISGSNFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 260


>gi|172036868|ref|YP_001803369.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698322|gb|ACB51303.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 636

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   +   + A +     PK +LL+GP G GKT +++ +A 
Sbjct: 190 DVAGIDEAKEELQEVVTFLKEPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 245 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 293


>gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
 gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
          Length = 633

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKIRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 586

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 136 EDVAGIDEAKEELQEIVTFLKEPEKFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAIA 190

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 191 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFKKA 224


>gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
 gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
          Length = 585

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 107 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 161

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 162 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 205


>gi|294657652|ref|XP_459952.2| DEHA2E14894p [Debaryomyces hansenii CBS767]
 gi|199432850|emb|CAG88198.2| DEHA2E14894p [Debaryomyces hansenii]
          Length = 989

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  V   ++   N  + ++L A +     P+  +L GP G GKT I++  A
Sbjct: 516 KDVAGMSEAKEEVMEFVKFLKNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATA 570

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 571 GEADVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTA 604


>gi|195375640|ref|XP_002046608.1| GJ12976 [Drosophila virilis]
 gi|194153766|gb|EDW68950.1| GJ12976 [Drosophila virilis]
          Length = 813

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 315 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 372

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 373 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRK 422


>gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
 gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1]
          Length = 679

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ +AK  +      L +  R  ++ A L     PK  LLVGP G GKT +++ +A 
Sbjct: 175 DVAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 230 EAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 262


>gi|332526117|ref|ZP_08402255.1| membrane protease FtsH catalytic subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332109960|gb|EGJ10588.1| membrane protease FtsH catalytic subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 634

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLAKAIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKSAPCIIFIDEIDAV 265


>gi|331011492|gb|EGH91548.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 589

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 110 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 164

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 165 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 200


>gi|260220961|emb|CBA29050.1| Cell division protease ftsH [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 641

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 165 DVAGCDEAKEEVKEVVDFLKDPSKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 220 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFENAKKNAPCIIFIDEIDAV 268


>gi|218458415|ref|ZP_03498506.1| cell division protein ftsH (ATP-dependent zinc-metallo protease)
           [Rhizobium etli Kim 5]
          Length = 192

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  +       L    MPK +LLVGP G GKT +++ +A  A
Sbjct: 34  NDVAGVDEAKEELKEVV-DFLKDPASYGRLGG-RMPKGVLLVGPPGTGKTLLAKAVAGEA 91

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G P+  +  ++F E+ +VG    ++ RDL + A
Sbjct: 92  GVPYFSISGSEFVEM-FVGVGAARV-RDLFEQA 122


>gi|216263728|ref|ZP_03435723.1| cell division protein FtsH [Borrelia afzelii ACA-1]
 gi|215980572|gb|EEC21393.1| cell division protein FtsH [Borrelia afzelii ACA-1]
          Length = 639

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|332993369|gb|AEF03424.1| ATP-dependent metalloprotease FtsH [Alteromonas sp. SN2]
          Length = 645

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVTELVDFLRDPSKFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 257


>gi|294085870|ref|YP_003552630.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665445|gb|ADE40546.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 636

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L++  + Q+L   +     PK +LLVGP G GKT +++ +A
Sbjct: 153 EDVAGIDEAKTELEEVVEFLKDPGKFQRLGGKI-----PKGVLLVGPPGTGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 208 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 257


>gi|254671944|emb|CBA04322.1| cell division protein [Neisseria meningitidis alpha275]
          Length = 384

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|253700219|ref|YP_003021408.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
 gi|251775069|gb|ACT17650.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21]
          Length = 612

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 29/262 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   + N  +  +    L   + PK +LL+GP G GKT ++R +A  A
Sbjct: 160 EDVAGIEEAKDELEEII-NFLKDPKKFTKLGGRI-PKGVLLMGPPGTGKTLLARAIAGEA 217

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV-REQA------ 126
           G PF  +  + F E+ +VG    ++ RDL       A  I+     D V R +       
Sbjct: 218 GVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKSAPCIIFIDEIDAVGRHRGAGLGGG 275

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  + G  +          N  +V    L      D+++ +   D    
Sbjct: 276 HDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPRPDVKGR 335

Query: 176 ISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLIDMDT 232
                +    +    ++   + ++         +   V +      R E     +ID D 
Sbjct: 336 EMILKVHTKKTPLSADVDLGVIARGTPGFSGADLSNVVNEAALIAARKEKSMVEMIDFDD 395

Query: 233 VHRDSIQMVENYGIVFLDEFDK 254
                +  VE   +V  DE  K
Sbjct: 396 AKDKVLMGVERRSMVISDEEKK 417


>gi|323450056|gb|EGB05940.1| hypothetical protein AURANDRAFT_72112 [Aureococcus anophagefferens]
          Length = 801

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ V   +    +  +    L  ++ PK  LL GP G GKT +++  A  A 
Sbjct: 310 DVAGVDEAKKEVMEFVE-FLKDPERFTKLGAKI-PKGALLCGPPGTGKTLLAKATAGEAN 367

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 368 VPFYSISGSEFVEM-FVGVGPSRV-RDLFKEA 397


>gi|319949225|ref|ZP_08023310.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
 gi|319437110|gb|EFV92145.1| ATP-dependent Clp protease ATP-binding subunit [Dietzia cinnamea
           P4]
          Length = 850

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R ++GQ +A RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRVVGQHEAVRAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA+         +++++++++E   V R V      +   A   + E+ R  
Sbjct: 621 SLAQFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|241889127|ref|ZP_04776431.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
 gi|241864376|gb|EER68754.1| Cell division protease FtsH homolog [Gemella haemolysans ATCC
           10379]
          Length = 678

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K+ +A  +   ++  +  ++ A +     PK +LL GP G GKT ++R +A
Sbjct: 168 DDVAGADEEKQELAEMVEFLKDHRKFTKMGARI-----PKGVLLEGPPGTGKTLLARAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 223 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFKEAEKN 259


>gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 720

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 34/249 (13%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+N  +   +   L+     K +LLVGP G GKT ++R +A 
Sbjct: 289 DVKGVDEVKEELQEIVEFLKNPQKFSSMGGTLQ-----KGVLLVGPPGTGKTLLARAIAG 343

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF     ++F EI +VG    +I R+L   A          + +  A I  +E  +
Sbjct: 344 EANVPFFHASGSEFDEI-FVGEGARRI-RNLFKSA----------KAKAPAIIFIDE--I 389

Query: 136 DALVGKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI----PGGASV 187
           D +  K  ++       +   + L + +   K  ++ V   ++  S+ D     PG   V
Sbjct: 390 DCVGSKRNSTMLHPYANQTINQLLSEMDGFAKNENVIVLGATNRKSDLDSALLRPGRFDV 449

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
            ++ + EL+   + S      +++           E+  +++   + R +++      + 
Sbjct: 450 EVMEILELYVNKIVSKNIDIEKLAKATAGCSGAHLEA--IVNHAAI-RAAVEGAPFVTME 506

Query: 248 FLDEF-DKI 255
            ++E  DKI
Sbjct: 507 HIEEAKDKI 515


>gi|67538836|ref|XP_663192.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
 gi|40743041|gb|EAA62231.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 334 DVHGCDEAKDELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 388

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L + A +               ++R+E   
Sbjct: 389 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQARSKSPAIIFIDELDAIGAKRNERDA 446

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G +        A +N  E+  K L      D+++ +++ D    +
Sbjct: 447 AYVKQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGRM 506

Query: 177 SNF 179
              
Sbjct: 507 DIL 509


>gi|322807659|emb|CBZ05234.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 658

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|260775430|ref|ZP_05884327.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608611|gb|EEX34776.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 650

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTFGD-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|168178995|ref|ZP_02613659.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950776|ref|YP_002805867.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670026|gb|EDT82002.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226844301|gb|ACO86967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
          Length = 658

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
 gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum
           Ice1]
          Length = 601

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L++  +  +L A +     PK +LL GP G GKT ++R +A
Sbjct: 158 DDVAGADEVKEELQEVVEFLKHPKKFVELGAKI-----PKGVLLFGPPGTGKTLLARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|86749516|ref|YP_486012.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2]
 gi|86572544|gb|ABD07101.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris HaA2]
          Length = 801

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L R + GQ  A  +++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLETTLKRVVFGQDKAIESLSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLASTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|221505298|gb|EEE30952.1| paraplegin, putative [Toxoplasma gondii VEG]
          Length = 1188

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E V      + G  +AKR +   +    +  Q    L  +L PK  LLVGP G GKT ++
Sbjct: 635 ETVKVRFSDVAGLHEAKREILEFV-TFLKHPQSFRRLGAKL-PKGALLVGPPGTGKTLLA 692

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           + +A  AG PF  +  ++F EI +VG     V ++  +   VA +I+     D V  +
Sbjct: 693 KAVAGEAGVPFFSMSGSEFVEI-FVGVGASRVRELFDEARKVAPSIIFIDEIDSVGAK 749


>gi|221484027|gb|EEE22331.1| peptidase M14 family protein [Toxoplasma gondii GT1]
          Length = 1188

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E V      + G  +AKR +   +    +  Q    L  +L PK  LLVGP G GKT ++
Sbjct: 635 ETVKVRFSDVAGLHEAKREILEFV-TFLKHPQSFRRLGAKL-PKGALLVGPPGTGKTLLA 692

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           + +A  AG PF  +  ++F EI +VG     V ++  +   VA +I+     D V  +
Sbjct: 693 KAVAGEAGVPFFSMSGSEFVEI-FVGVGASRVRELFDEARKVAPSIIFIDEIDSVGAK 749


>gi|187918641|ref|YP_001884207.1| cell division protein FtsH [Borrelia hermsii DAH]
 gi|119861489|gb|AAX17284.1| cell division protein FtsH [Borrelia hermsii DAH]
          Length = 635

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK+ ++  +   +   + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 173 KDVAGQEEAKQELSEIVEFLKYPKKFEKIGARI-----PKGVLLVGSPGTGKTLLAKAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 228 GEAGVNFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 261


>gi|51599040|ref|YP_073228.1| cell division protein [Borrelia garinii PBi]
 gi|51573611|gb|AAU07636.1| cell division protein [Borrelia garinii PBi]
          Length = 639

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|87124626|ref|ZP_01080474.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167505|gb|EAQ68764.1| cell division protein [Synechococcus sp. RS9917]
          Length = 587

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +E V+     + G  +AK  +      L+   R  Q+ A +     P+ +LLVGP G GK
Sbjct: 123 QEEVTTRFEDVAGINEAKEELQEVVTFLKTPERFIQIGAKI-----PRGVLLVGPPGTGK 177

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  AG PF  +  ++F E+ +VG     V  + +   + A  IV     D V
Sbjct: 178 TLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASRVRDLFKKAKEKAPCIVFIDEIDAV 235


>gi|148381284|ref|YP_001255825.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931204|ref|YP_001385661.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936273|ref|YP_001389067.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|148290768|emb|CAL84899.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927248|gb|ABS32748.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932187|gb|ABS37686.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           Hall]
          Length = 658

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 45/247 (18%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  + F E+ +VG    ++ RDL + A            +E+A        
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA------------QEKAPCIIFIDE 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLS 193
           +DA+      + +    R++  +  +++             +  FD   G  +    N  
Sbjct: 266 IDAIGKSRDNAMSSNDEREQTLNQLLAE-------------MDGFDSSKGVVILAATNRP 312

Query: 194 ELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESD-----RLIDMDTVHRDSIQMVENY 244
           E+  K +    +   R+ V     K   ++++  S      + +DM ++ + +   V + 
Sbjct: 313 EILDKALLRPGRFDRRVIVDRPDLKGREDILKVHSKGVKISKEVDMSSIAKSTPGAVGSD 372

Query: 245 GIVFLDE 251
               ++E
Sbjct: 373 LANIINE 379


>gi|332263249|ref|XP_003280663.1| PREDICTED: paraplegin [Nomascus leucogenys]
          Length = 510

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 308 KDVAGMHEAKLEVREFVDYLKSPERYLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 362

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 363 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 415


>gi|254796786|ref|YP_003081623.1| metalloprotease [Neorickettsia risticii str. Illinois]
 gi|310946750|sp|C6V4R9|FTSH_NEORI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|254589968|gb|ACT69330.1| metalloprotease [Neorickettsia risticii str. Illinois]
          Length = 636

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A  +   R   + Q+L   +     PK  LL+GP G GKT +++ +A 
Sbjct: 158 DVAGIDEAKEELAEIVEFLREPKKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCLIFIDEIDAV 261


>gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
 gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
          Length = 582

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 104 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 158

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 159 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 202


>gi|192361874|ref|YP_001983133.1| cell division protein FtsH [Cellvibrio japonicus Ueda107]
 gi|190688039|gb|ACE85717.1| cell division protein FtsH [Cellvibrio japonicus Ueda107]
          Length = 637

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V   +  ++ R           +P+ +L+VGP G GKT +++ +A  A 
Sbjct: 158 DVAGVDEAKEEVQELV--QYLRDPSKFQRLGGQIPRGVLMVGPPGTGKTLLAKAIAGEAK 215

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 216 VPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIVFIDEIDAV 261


>gi|170780555|ref|YP_001708887.1| cell division protein ftsH-like protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155123|emb|CAQ00223.1| cell division protein ftsH homolog [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 666

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 165 DVAGADEAIEELEEIKDFLKEPAKFQAVGARI-----PKGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 637

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 88/261 (33%), Gaps = 29/261 (11%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLQEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQ------ 288

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGIL 190
            R      G      T      ++   E +   I I   +    + S    PG     + 
Sbjct: 289 -RGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVT 347

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTVHRDSIQMV 241
             +      +           +Q            P     +   L++   +     +  
Sbjct: 348 VDAPDIKGRLSILEVHARNKKLQDDLTLESIARRTPGFTGADLANLLNEAAILTARRRKT 407

Query: 242 ENYGIVFLDEFDKIVARDSGN 262
           E       D  D+IVA   G+
Sbjct: 408 EISISEIDDSVDRIVAGMEGS 428


>gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
 gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III
           heat-shock) [Geobacillus thermodenitrificans NG80-2]
 gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
          Length = 631

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           R + G  + K  +   +    +  +  A+L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 162 RDVAGADEEKEELVEIVE-FLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|77456999|ref|YP_346504.1| membrane protease FtsH catalytic subunit [Pseudomonas fluorescens
           Pf0-1]
 gi|77381002|gb|ABA72515.1| cell division protein [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
 gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037]
          Length = 670

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 24/222 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L++  + +++ A +     PK +LL GP G GKT ++R +A
Sbjct: 167 QDVAGSDEAIEELDEIKEFLKDPKKFEEVGARI-----PKGVLLYGPPGTGKTLLARAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  + F E+ +VG    ++ RDL + A     +     +     I+A  R 
Sbjct: 222 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFNQA-----KESSPAIIFIDEIDAVGRH 274

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
             A +G        +   + L + +  D ++++ V   ++     D P     G  +   
Sbjct: 275 RGAGMGGGHDER-EQTLNQMLVEMDGFDPKVNVIVIAATNRPDILD-PALLRPGRFDRQ- 331

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                    + ++  + V      L        +D++ V R 
Sbjct: 332 -IGVDAPDLKGRQRILEVHGRGKPLSDS-----VDLEVVARK 367


>gi|320580738|gb|EFW94960.1| Mitochondrial respiratory chain complexes assembly protein RCA1
           [Pichia angusta DL-1]
          Length = 815

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 17/127 (13%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   ++   N  + ++L A +     P+  +L GP G GKT +++  A
Sbjct: 351 DDVAGCDEAKEEIMEFVKFLKNPEKYERLGAKI-----PRGAILTGPPGTGKTMLAKATA 405

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-----REQA 126
             AG PF  V  ++F E+ +VG     V ++ +   + A +I+     D +     + +A
Sbjct: 406 GEAGVPFYSVSGSEFVEM-FVGVGASRVRELFKTARENAPSIIFVDEIDAIGKSRSKGRA 464

Query: 127 SINAEER 133
           + + +ER
Sbjct: 465 AGSNDER 471


>gi|256826672|ref|YP_003150631.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582815|gb|ACU93949.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 759

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A      V   L N  + Q + A +     P+  LLVGP G GKT ++R +A 
Sbjct: 195 DVAGVDEAVEEMQEVRDFLANPKKYQDIGAKI-----PRGCLLVGPPGTGKTLLARAVAG 249

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKQA 282


>gi|229592643|ref|YP_002874762.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|229364509|emb|CAY52361.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 639

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|225559825|gb|EEH08107.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus
           G186AR]
          Length = 822

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 359 DVHGCDEAKEELQELVEFLTNPERFNNLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 413

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 414 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 446


>gi|237836501|ref|XP_002367548.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
 gi|211965212|gb|EEB00408.1| AFG3 ATPase family protein [Toxoplasma gondii ME49]
          Length = 1188

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E V      + G  +AKR +   +    +  Q    L  +L PK  LLVGP G GKT ++
Sbjct: 635 ETVKVRFSDVAGLHEAKREILEFV-TFLKHPQSFRRLGAKL-PKGALLVGPPGTGKTLLA 692

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           + +A  AG PF  +  ++F EI +VG     V ++  +   VA +I+     D V  +
Sbjct: 693 KAVAGEAGVPFFSMSGSEFVEI-FVGVGASRVRELFDEARKVAPSIIFIDEIDSVGAK 749


>gi|152990129|ref|YP_001355851.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
 gi|151421990|dbj|BAF69494.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor
           sp. SB155-2]
          Length = 729

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   ++GQ++A   +A+A+    +R +   +  +     + L VGPTGVGKT +
Sbjct: 437 KNLEEKLKERVLGQEEAVEQLAMAI----KRSRAGLNPPN-KPIGSFLFVGPTGVGKTEL 491

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++ LAR  G  F + +++++ E   V R
Sbjct: 492 AKELARTMGVHFERFDMSEYMEKHAVSR 519


>gi|148679799|gb|EDL11746.1| AFG3(ATPase family gene 3)-like 1 (yeast), isoform CRA_a [Mus
           musculus]
          Length = 458

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 175 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 232

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 233 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 284

Query: 136 DALVGKTATSNTREVF 151
             L G++   NT    
Sbjct: 285 GHLGGQSEQENTLNQM 300


>gi|150020111|ref|YP_001305465.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis
           BI429]
 gi|149792632|gb|ABR30080.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis
           BI429]
          Length = 617

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L+N  +  ++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 160 KDVAGVDEAVEELQEIVDFLKNPGKFNKIGARM-----PKGVLLVGPPGTGKTLLARAVA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 215 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFNQA 248


>gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
 gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
          Length = 585

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 107 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 161

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 162 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 205


>gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 585

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 107 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 161

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 162 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 205


>gi|219684938|ref|ZP_03539879.1| cell division protein FtsH [Borrelia garinii PBr]
 gi|219671676|gb|EED28732.1| cell division protein FtsH [Borrelia garinii PBr]
          Length = 639

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|159901485|ref|YP_001547732.1| ATPase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894524|gb|ABX07604.1| ATPase AAA-2 domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 859

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 566 KMEERLHARVIGQHEAVKAVSDAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA       A  ++++++++ E   V R
Sbjct: 620 ARALAEFLFDDEAAMVRIDMSEYMERHAVAR 650


>gi|332535442|ref|ZP_08411227.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035125|gb|EGI71638.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 725

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  +  A+  A+     R        +E    + L  GPTGVGKT
Sbjct: 450 TLKNLDRNLKMLVFGQDQSIDALTSAI-----RLSRSGLSSEEKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++++LA+  G  FI+ +++++ E            GYVG     +   L +  I     
Sbjct: 505 EVTKQLAKCMGVEFIRFDMSEYVERHAISRLIGAPPGYVGFEQGGL---LTEAVIKNPHA 561

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 562 VVLLDEIEKAHPDIYNILLQVMDHGTLTDNN 592


>gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
 gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
          Length = 494

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 10  REIVSELDRYIIGQQDAK-RAVAIALRNRWR---------------RQQLPADLRDELMP 53
           + I S     + G   AK   + ++LR + R               R            P
Sbjct: 190 KNIQSVKFEDVAGVDTAKAELLEVSLRKKLRLPLMVFLFFQIVSCLRGASNFRSLGAKFP 249

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           K +LL+GP G GKT ++R LA  AG PF     ++F E+ +VGR   +I R+L  VA   
Sbjct: 250 KGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAARI-RELFTVARKH 307


>gi|227494494|ref|ZP_03924810.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
 gi|226832228|gb|EEH64611.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM
           15436]
          Length = 670

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 31/247 (12%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L N  R Q++ A      +P+ +LL GP G GKT +++ +A 
Sbjct: 172 DVAGADEAVEELEEIKNFLANAERYQKVGAK-----VPRGVLLYGPPGTGKTLLAKAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            A  PF  +  ++F E+ YVG     V ++       A  I+     D V R++      
Sbjct: 227 EAEVPFFSISGSEFMEL-YVGVGASRVRELFDKAKKAAPAIIFIDEIDAVGRQRGSGYGG 285

Query: 127 ----SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G  AT        +N  +V    L      D++I +E  D   
Sbjct: 286 GSDERDQTLNQMLVEMDGFDATTNLLVIAATNRPDVLDSALLRPGRFDRQISVEAPDMKG 345

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             +   +         +++         G       +V      L    +  LIDM    
Sbjct: 346 REAILKVHANGKPLTNDVNLRLIAKRTPGFTGADLANVLNEAALLTARSNADLIDM-RAI 404

Query: 235 RDSIQMV 241
            ++I  V
Sbjct: 405 DEAIDRV 411


>gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 616

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  +A     L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 162 DVAGIEQAKLELAEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 249


>gi|67926179|ref|ZP_00519407.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
 gi|67851976|gb|EAM47507.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular
           [Crocosphaera watsonii WH 8501]
          Length = 354

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 163 DVAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|262163949|ref|ZP_06031688.1| cell division protein FtsH [Vibrio mimicus VM223]
 gi|262027477|gb|EEY46143.1| cell division protein FtsH [Vibrio mimicus VM223]
          Length = 632

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +  +  + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 128 MSEEQIKTTFND-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 181

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 182 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 226


>gi|183602738|ref|ZP_02964101.1| protease of ClpA/ClpB type [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191496|ref|YP_002968890.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196901|ref|YP_002970456.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183217976|gb|EDT88624.1| protease of ClpA/ClpB type [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249888|gb|ACS46828.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251455|gb|ACS48394.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794488|gb|ADG34023.1| ATP-binding subunit of Clp protease [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 895

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L+R +IGQ +A RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 570 MEEYLNRRVIGQPEAVRAVSDAVR------RSRAGLSDPNRPTGSFLFMGPTGVGKTELA 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 624 KALAEFLFDDEKAMIRIDMSEYMEKSSVSR 653


>gi|167584242|ref|ZP_02376630.1| Peptidase M41, FtsH [Burkholderia ubonensis Bu]
          Length = 565

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +A  +   +   R  Q+ A +     PK +LLVGP G GKT +++ +A
Sbjct: 169 KDVAGVEEAKTELAEIVEFLKYPQRYIQIGARI-----PKGVLLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVSFFSISGSEFVEL-FVGAGAARV-RDLFEQA 257


>gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 587

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K     +   L+N  + + + A +     PK +LL GP G GKT ++R +A 
Sbjct: 153 DVAGMDEVKGELEEIVDYLKNPDKYRAIGARI-----PKGVLLYGPPGTGKTLLARAVAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA 130
            AG PF  +  + F E+ +VG     V ++       A  IV     D V  Q    A
Sbjct: 208 EAGVPFFALSGSSFVEL-FVGMGASRVRELFAQARKNAPCIVFIDEIDAVGRQRGSAA 264


>gi|320594231|gb|EFX06634.1| intermembrane space aaa protease iap-1 [Grosmannia clavigera
           kw1407]
          Length = 811

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+N               +PK ILLVGP G GKT ++R +A 
Sbjct: 347 DVHGCDEAKDELQELVDFLKNP-----AGFSTLGGKLPKGILLVGPPGTGKTLLARAVAG 401

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ RDL   A
Sbjct: 402 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFTAA 434


>gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group]
          Length = 588

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 26/123 (21%)

Query: 18  RYIIGQQDAKRAVA--------IAL---RNR----WRRQQLPADLRDELMPKNILLVGPT 62
             + G  +AK  +         +A+          +++           +P+ +LLVGP 
Sbjct: 291 DDVQGVDEAKEELVEISRLIIEVAMVVSCLHGSLNYKKLGA-------KLPRGVLLVGPP 343

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G GKT ++R +A  AG PF  V  ++F E+ +VGR    V  + ++  + A +I+     
Sbjct: 344 GTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAARVRDLFKEAKEAAPSIIFIDEL 402

Query: 120 DEV 122
           D V
Sbjct: 403 DAV 405


>gi|218441710|ref|YP_002380039.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218174438|gb|ACK73171.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 625

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 110/282 (39%), Gaps = 38/282 (13%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +A  +   ++  R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 168 EDVAGVDEAKIELAEIVGFLKSPQRYNAIGARI-----PRGVLLVGPPGTGKTLLAKAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF  +  ++F E+ +VG    ++ RDL + A            +++A        
Sbjct: 223 GEAKVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA------------KKKAPCIIFIDE 268

Query: 135 LDALVGKTA-------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           LDA+    A            +   + L + +         +   +++      P     
Sbjct: 269 LDAIGKSRAGNGFVGGNDEREQTLNQLLTEMDGFSAGDATVIVLAATNRPETLDPALLRP 328

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G  +   L  +   SGR K + +  QK        + D+ +D+  +   +          
Sbjct: 329 GRFDRQVLVDRPDLSGRLKILEIYAQK-------VKLDKDVDLKEIATRTPGFAGADLAN 381

Query: 248 FLDEFDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTK 287
            ++E   + AR+    +G    RE ++R +  L + S V ++
Sbjct: 382 LINEAALLAARNERTTVGQEDLREAIERIVAGLEKKSRVLSE 423


>gi|328542548|ref|YP_004302657.1| Cell division protease FtsH-like protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412294|gb|ADZ69357.1| Putative Cell division protease FtsH-like protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 641

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT  +R +A
Sbjct: 155 DDVAGIDEAKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLTARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF  +  + F E+ +VG     V  +       A  I+     D V R + +   
Sbjct: 210 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGA--- 265

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G    ++ RE    +L       +  +  +   +++  +   P     G  
Sbjct: 266 ---------GLGGGNDEREQTLNQLLVEMDGFEPNEGIIIIAATNRPDVLDPALLRPGRF 316

Query: 191 NLSELFSKVMGSGRKKKIRMSVQK 214
           +   +      +GR+K +++ ++K
Sbjct: 317 DRQIVVPNPDITGREKILKVHMRK 340


>gi|313157295|gb|EFR56720.1| ATP-dependent metallopeptidase HflB [Alistipes sp. HGB5]
          Length = 692

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + +  ++ +   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 187 KDVAGLEEAKVEIMEIV-DFLKKSEKYKELGAKI-PKGALLVGPPGTGKTLLAKAVAGEA 244

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF+ +  + F E+ +VG    ++ RDL + A
Sbjct: 245 NVPFLSISGSDFVEM-FVGVGASRV-RDLFEQA 275


>gi|121998549|ref|YP_001003336.1| ATP-dependent metalloprotease FtsH [Halorhodospira halophila SL1]
 gi|121589954|gb|ABM62534.1| membrane protease FtsH catalytic subunit [Halorhodospira halophila
           SL1]
          Length = 651

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L        +P+ +L+VGP G GKT +++ +A 
Sbjct: 159 DVAGCDEAKEDVKELVDFLRDPSKFQKLGG-----TIPRGVLMVGPPGTGKTLLAKAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+   A   
Sbjct: 214 EARVPFFSISGSDFVEM-FVGVGASRV-RDMFQQAKKQ 249


>gi|126305005|ref|XP_001377922.1| PREDICTED: similar to AFG3(ATPase family gene 3)-like 1 (yeast)
           [Monodelphis domestica]
          Length = 915

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 295 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 352

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +
Sbjct: 353 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKNAPCILFIDEIDAIGRK 401


>gi|91977523|ref|YP_570182.1| ATPase AAA-2 [Rhodopseudomonas palustris BisB5]
 gi|91683979|gb|ABE40281.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Rhodopseudomonas palustris BisB5]
          Length = 801

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R + GQ  A  ++A +++              E      L  GPTGVGKT +++
Sbjct: 460 LEQTLKRVVFGQDKAIESLAASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEVAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 515 QLALTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|329768246|ref|ZP_08259747.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
 gi|328837445|gb|EGF87074.1| hypothetical protein HMPREF0428_01444 [Gemella haemolysans M341]
          Length = 668

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +A  +   ++  +  ++ A +     PK +LL GP G GKT ++R +A
Sbjct: 168 KDVAGADEEKQELAEMVEFLKDHRKFTKMGARI-----PKGVLLEGPPGTGKTLLARAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 223 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFKEAEKN 259


>gi|222631844|gb|EEE63976.1| hypothetical protein OsJ_18802 [Oryza sativa Japonica Group]
          Length = 792

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +   +    N  + ++L A +     PK  L VGP G GKT +++  A
Sbjct: 305 KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKI-----PKGALPVGPPGTGKTLLAKATA 359

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             +G PF+ +  + F E+ +VG     V  + ++    A +I+     D +
Sbjct: 360 GESGLPFLSISGSDFMEM-FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 409


>gi|198282815|ref|YP_002219136.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666632|ref|YP_002425012.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247336|gb|ACH82929.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518845|gb|ACK79431.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 752

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   I GQ+ A   ++ A++              E    + L  GPTGVGKT +
Sbjct: 449 KNLERDLGFVIFGQEKAIHELSAAIK-----MARAGLRHHEKPVGSFLFSGPTGVGKTEL 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           SR+LA L G P ++ +++++ E            GYVG +    + + V    +
Sbjct: 504 SRQLASLLGIPLLRFDMSEYMERHTVSRLIGAPPGYVGHDQAGQLTEAVSRNPH 557


>gi|168001423|ref|XP_001753414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695293|gb|EDQ81637.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 110/295 (37%), Gaps = 31/295 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+N  +  +L   L     PK +LL GP G GKT +++ +A
Sbjct: 209 NDVKGCDEAKEELEEIVEYLKNPAKFTRLGGKL-----PKGVLLTGPPGTGKTLLAKAIA 263

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF     ++F E+ +VG    ++ R L   A            +++A        
Sbjct: 264 GEAGVPFFYRAGSEFEEM-FVGVGARRV-RSLFQAA------------KKKAPCIVFIDE 309

Query: 135 LDALVGKTATS--NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           +DA+ G       +T++   + L + +  D   +  +   ++++     P     G  + 
Sbjct: 310 IDAVGGSRKQWEGHTKKTLNQLLVEMDGFDA-NEGIIVLAATNLPETLDPALTRPGRFDR 368

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI----VF 248
             + S     GRK+ + + +Q     L  D   +++   T       +     +      
Sbjct: 369 HVVVSNPDSKGRKEILNLYLQD--KPLADDVDVQMLARGTPGFSGADLANMVNMAAVKAA 426

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303
           +D  DKI  +           G +R  + L E S   T Y       + F   GA
Sbjct: 427 VDGIDKITNKQLEFAKDKLLMGTERKSMALTEESRKLTAYHESGHAVVAFNTQGA 481


>gi|121607214|ref|YP_995021.1| ATP-dependent metalloprotease FtsH [Verminephrobacter eiseniae
           EF01-2]
 gi|121551854|gb|ABM56003.1| membrane protease FtsH catalytic subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 655

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 178 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 232

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 233 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFDNAKKN 268


>gi|322802278|gb|EFZ22674.1| hypothetical protein SINV_06415 [Solenopsis invicta]
          Length = 748

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 242 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 299

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +         
Sbjct: 300 NVPFITVSGSEFLEM-FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRKRGGRNFGGH 358

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 359 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRIDILDKALLRPGRFDRQIFVPAPDIKGRA 418

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +       +LN  EL  K+
Sbjct: 419 SIFKVHLAPLKTMLNKDELARKM 441


>gi|308094710|ref|ZP_05891424.2| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
 gi|308089598|gb|EFO39293.1| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
          Length = 680

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 164 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 217

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 218 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 276

Query: 121 EV 122
            V
Sbjct: 277 AV 278


>gi|300122792|emb|CBK23808.2| m-AAA (Yta12) [Blastocystis hominis]
          Length = 1141

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 41/264 (15%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ +      L+N  +   L A L     PK  +L GP G GKT +++  A
Sbjct: 77  KDVAGIDEAKQEIMEFIDFLKNGDKYAALGAKL-----PKGAILSGPPGTGKTLLAKAAA 131

Query: 75  RLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
             A  PF+ +  + F E  +G   + V ++  +    A  IV     D V ++ +     
Sbjct: 132 GEANVPFLSISGSDFVELFVGMGAKRVRELFAEARKNAPCIVFIDEIDAVGKKRNE---- 187

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                  G + +++ RE    ++         I+++       I+ F           N 
Sbjct: 188 -------GFSGSNDEREQTLNQI--------LIEMDGFKPRDGITIF--------AGTNR 224

Query: 193 SELFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
            ++    +    +    ++V     +   ++ +    +++        + ++ E      
Sbjct: 225 LDVLDPALLRAGRFDRHITVDKPDLEGRKQISKIYLSKVVLDGDTDEMAQKLAEMTPGYT 284

Query: 249 LDEFDKIVARDSGNGIGVSREGVQ 272
             + + IV   +   I    E VQ
Sbjct: 285 GADINNIVNEAAIIAIRNKHEKVQ 308


>gi|269968319|ref|ZP_06182341.1| cell division protein FtsH [Vibrio alginolyticus 40B]
 gi|269827070|gb|EEZ81382.1| cell division protein FtsH [Vibrio alginolyticus 40B]
          Length = 678

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 164 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 217

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 218 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 276

Query: 121 EV 122
            V
Sbjct: 277 AV 278


>gi|254586201|ref|XP_002498668.1| ZYRO0G15818p [Zygosaccharomyces rouxii]
 gi|238941562|emb|CAR29735.1| ZYRO0G15818p [Zygosaccharomyces rouxii]
          Length = 810

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A RA++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 497 MENSLKERVVGQDEAIRAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 551

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +       
Sbjct: 552 ALAEFLFDNESNVIRFDMSEFQEKHTVSRLIGAPPGYVMSESGGQLTEAVRRKPYSVVLF 611

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +  E+         A  +  ++  + L +G+++D +  +     +  +   ++     + 
Sbjct: 612 DEFEK---------AHPDVCKILLQVLDEGKLTDSQGHVVDFRNTIIVMTSNVGQDILLT 662

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV-HRDSIQMVENYGIV 247
             + SE           K+++  V +    L   E    ID   V +R S  ++ +   +
Sbjct: 663 DEHASE------DGTVSKEVKTKVIEAMKRLYPPEFMNRIDELLVFNRLSKDVLRSIVDI 716

Query: 248 FLDEF 252
            LDE 
Sbjct: 717 RLDEI 721


>gi|221116355|ref|XP_002163196.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 745

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 81/213 (38%), Gaps = 41/213 (19%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + Q+L A L     P  +LL+GP G GKT ++R +A  A  PF     ++F E+ 
Sbjct: 329 LKNPEKFQKLGAKL-----PGGVLLIGPPGTGKTLLARAIAGEADVPFFFASGSEFDEM- 382

Query: 94  YVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153
           +VG    +I R L   A            +E A        LDA+ GK   ++++   R 
Sbjct: 383 FVGVGAARI-RKLFASA------------KEHAPSIIFMDELDAIGGKRNANDSQPYSRM 429

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            L         ++++    +  +           G  N  E+  K +    +   ++ V 
Sbjct: 430 TLNQL-----LVELDGFTQNEGVIVI--------GATNFPEILDKALTRPGRFDSKVHVA 476

Query: 214 KCYPE---------LMRDESDRLIDMDTVHRDS 237
                         L +    + ID + + R S
Sbjct: 477 MPDVRGRKNILQLYLKKVPCAKDIDAEVLARGS 509


>gi|153840418|ref|ZP_01993085.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
 gi|149745920|gb|EDM57050.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
          Length = 602

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|121594724|ref|YP_986620.1| FtsH peptidase [Acidovorax sp. JS42]
 gi|222110673|ref|YP_002552937.1| ATP-dependent metalloprotease ftsh [Acidovorax ebreus TPSY]
 gi|120606804|gb|ABM42544.1| membrane protease FtsH catalytic subunit [Acidovorax sp. JS42]
 gi|221730117|gb|ACM32937.1| ATP-dependent metalloprotease FtsH [Acidovorax ebreus TPSY]
          Length = 639

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|47507516|gb|AAH71038.1| LOC432063 protein [Xenopus laevis]
          Length = 788

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +   +D   + + G ++AK  +   + N  +  +   DL  ++ P+  +L GP G 
Sbjct: 287 TAKMLKGNIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYLDLGAKI-PRGAMLTGPPGT 344

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 345 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDMFAMARKNAPCILFIDEIDA 403

Query: 122 VREQ 125
           V  +
Sbjct: 404 VGRK 407


>gi|269961974|ref|ZP_06176329.1| cell division protein FtsH [Vibrio harveyi 1DA3]
 gi|269833297|gb|EEZ87401.1| cell division protein FtsH [Vibrio harveyi 1DA3]
          Length = 680

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 164 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 217

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 218 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 276

Query: 121 EV 122
            V
Sbjct: 277 AV 278


>gi|268592831|ref|ZP_06127052.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
 gi|291311617|gb|EFE52070.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
          Length = 659

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   R Q+L   +     PK +L+VGP G
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGEIVEFLREPARFQKLGGKI-----PKGVLMVGPPG 195

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 254

Query: 121 EV 122
            V
Sbjct: 255 AV 256


>gi|224534150|ref|ZP_03674730.1| cell division protein FtsH [Borrelia spielmanii A14S]
 gi|224514575|gb|EEF84889.1| cell division protein FtsH [Borrelia spielmanii A14S]
          Length = 639

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K   R V   L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 676

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K   + V   L+   + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 203 DVAGVDESKYELQEVVEFLKTPQKFQRLGGKI-----PRGVLLVGPPGTGKTLLARAVAG 257

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+  VG    ++ RDL D A
Sbjct: 258 EAGVPFFSMSGSEFVEV-LVGVGASRV-RDLFDQA 290


>gi|288957527|ref|YP_003447868.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288909835|dbj|BAI71324.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 771

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+  A++              E    N L  GPTGVGKT ++R
Sbjct: 456 LERDLKTMVFGQNKAIDALVSAIK-----LARAGLREPEKPIGNYLFTGPTGVGKTEVAR 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 511 QLAMTLGIELTRFDMSEYMERHTVSRLIGAPPGYVGFDQGGMLTDAIDQHPHC 563


>gi|315644387|ref|ZP_07897527.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
 gi|315280264|gb|EFU43556.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453]
          Length = 689

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 151 KSKARLYNEEKKRITFEDVAGADEEKQELIEVVDFLKDPRKFNTVGARI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 258


>gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
 gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
          Length = 612

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|332307114|ref|YP_004434965.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174443|gb|AEE23697.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 656

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 159 DVAGCDEAKEDVSELVDFLRDPSKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 262


>gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
 gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
          Length = 633

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
 gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
          Length = 612

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
 gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
          Length = 612

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 134 EKKKIRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 189 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 232


>gi|305682339|dbj|BAJ16257.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682345|dbj|BAJ16260.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 19/95 (20%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++ +    +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 7   DVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIME 66

Query: 281 GSSVSTK-----------YGSINTDHILFIASGAF 304
           G+                +  ++T ++LFI  GAF
Sbjct: 67  GTIALVPPQGGRKHPQQDFIQVDTTNMLFICGGAF 101



 Score = 41.1 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSN 146
            GYVG +VE II  L+  A   V  +++     DE+ + A  +    I   + G+     
Sbjct: 1   AGYVGEDVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 60

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNLSE 194
             ++    +            +      D +N   I GGA  GI  + E
Sbjct: 61  LLKIMEGTIALVPPQGGRKHPQQDFIQVDTTNMLFICGGAFTGIEKIIE 109


>gi|237745684|ref|ZP_04576164.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
 gi|229377035|gb|EEO27126.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
          Length = 627

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V      LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 157 NDVAGCDEAKEEVHEVVDFLRDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLARAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFETAKKH 248


>gi|261345167|ref|ZP_05972811.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
 gi|282566859|gb|EFB72394.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
          Length = 655

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   R Q+L   +     PK +L+VGP G
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGEIVEFLREPARFQKLGGKI-----PKGVLMVGPPG 195

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 254

Query: 121 EV 122
            V
Sbjct: 255 AV 256


>gi|153940193|ref|YP_001392688.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152936089|gb|ABS41587.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           Langeland]
 gi|295320670|gb|ADG01048.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           230613]
          Length = 658

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK ++   +           +   E+   +PK  LLVGP G GKT +++ +A
Sbjct: 165 EDVAGQDEAKESLVEIV-----DFLHKPERYTEIGAKLPKGALLVGPPGTGKTLLAKAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 GEAKVPFFSLSGSSFVEM-FVGMGAARV-RDLFEQA 253


>gi|157375025|ref|YP_001473625.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           sediminis HAW-EB3]
 gi|157317399|gb|ABV36497.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           sediminis HAW-EB3]
          Length = 752

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + ++++  LDR     + GQ +A  +++ A+     R        ++    + L  GPTG
Sbjct: 444 TDKDLLRNLDRNLKMVVFGQDNAIESLSSAI-----RLSRSGLGGEQKPVGSFLFAGPTG 498

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 499 VGKTEVTSQLAKCLGLNLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKTPH 558

Query: 113 I 113
            
Sbjct: 559 C 559


>gi|50290675|ref|XP_447770.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527081|emb|CAG60717.1| unnamed protein product [Candida glabrata]
          Length = 827

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   RN  R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 352 KDVAGCDEAKEEIMEFVSFLRNPQRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 406

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 407 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTA 440


>gi|23009988|ref|ZP_00050835.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 445

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 310 KNLTENLKRVVYGQTNAIEALTSAIK------LARAGLRDPDKPIGSYLFAGPTGVGKTE 363

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 364 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 419


>gi|327482032|gb|AEA85342.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVHELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|187935018|ref|YP_001884419.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723171|gb|ACD24392.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B str.
           Eklund 17B]
          Length = 601

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   +  ++ A +     PK +LLVGP G GKT +++ ++
Sbjct: 159 KDVAGADEEKAELEEIVDFLKTPSKYIEIGARI-----PKGVLLVGPPGTGKTLLAKAIS 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +  D    A  ++     D V
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKNAPCLIFIDEIDAV 263


>gi|163751225|ref|ZP_02158453.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           benthica KT99]
 gi|161328939|gb|EDQ00013.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           benthica KT99]
          Length = 752

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           + ++++  LDR     + GQ +A  +++ A+     R        +     + L  GPTG
Sbjct: 444 TDKDMLKNLDRNLKMVVFGQDNAIGSLSAAI-----RLSRSGLSGENKPVGSFLFAGPTG 498

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +LA+  G   ++ +++++TE            GYVG +   ++ D V     
Sbjct: 499 VGKTEVTSQLAKCLGLNLVRFDMSEYTESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPY 558

Query: 113 I 113
            
Sbjct: 559 C 559


>gi|104780021|ref|YP_606519.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
 gi|95109008|emb|CAK13704.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
          Length = 635

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|94266400|ref|ZP_01290097.1| Peptidase M41, FtsH [delta proteobacterium MLMS-1]
 gi|93452995|gb|EAT03489.1| Peptidase M41, FtsH [delta proteobacterium MLMS-1]
          Length = 647

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 35/268 (13%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  ++     L++  +  +L   +     PK +LL+G  G GKT +++ +A
Sbjct: 154 KDVAGIDEAKEDLSEIIDFLKDPGKFTRLGGRI-----PKGVLLMGAPGTGKTLLAKAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV-REQA--- 126
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V R +    
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKSAPCIIFIDEIDAVGRHRGAGV 266

Query: 127 ------SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G          A +N  +V    L      D+++ +   D 
Sbjct: 267 GGGHDEREQTLNQLLVEMDGFESNDGVIIVAATNRPDVLDPALLRPGRFDRQVVVPSPDV 326

Query: 173 SSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR--LID 229
                   + G  +    +++    ++         +   V +      R ++++  +  
Sbjct: 327 KGREMILLVHGQKTQVADDVNWAQIARGTPGFSGADLENMVNEAALLAARQDAEKVQMHH 386

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           ++      +   E   ++  +E  KI A
Sbjct: 387 LEQAKDKVMMGAERRSMIITEEEKKITA 414


>gi|219683162|ref|YP_002469545.1| ATP-dependent chaperone ClpB [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|61679305|gb|AAX52932.1| ClpB [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|219620812|gb|ACL28969.1| ATP-dependent chaperone ClpB [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|289177621|gb|ADC84867.1| ClpB [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 899

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L+R +IGQ +A RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 574 MEEYLNRRVIGQPEAVRAVSDAVR------RSRAGLSDPNRPTGSFLFMGPTGVGKTELA 627

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 628 KALAEFLFDDEKAMIRIDMSEYMEKSSVSR 657


>gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 688

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 51/237 (21%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N      L A L     PK +LLVGP G GKT ++R +A 
Sbjct: 206 DVHGCDEAKEELQEVVEFLKNPENFSDLGAKL-----PKGVLLVGPPGTGKTLLARAVAG 260

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F EI +VG   +++ R+L   A          + +  A I  +E  L
Sbjct: 261 EAGVPFFYMSGSEFDEI-FVGVGAKRV-RELFAAA----------KAKSPAIIFIDE--L 306

Query: 136 DALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           DA+ G       ++ ++   + L + +  D++  I +                 +G  NL
Sbjct: 307 DAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIII-----------------MGATNL 349

Query: 193 SELFSKVMGSGRKKKIRMSV----QKCYPELMRDESDRL-----IDMDTVHRDSIQM 240
             L  K +    +    ++V     +    +++  + ++     +D+D +   S   
Sbjct: 350 PNLLDKALTRPGRFDRHINVDLPDVRGRLAILKHHAKKIKAAPDVDLDAIAARSPGR 406


>gi|237808996|ref|YP_002893436.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
 gi|237501257|gb|ACQ93850.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
          Length = 641

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     PK IL+VG  G GKT +++ +A 
Sbjct: 153 DVAGCDEAKEEVKELVDYLRDPSRFQKLGGKI-----PKGILMVGQPGTGKTLLAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 208 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 240


>gi|170719900|ref|YP_001747588.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
 gi|169757903|gb|ACA71219.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
          Length = 634

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
          Length = 614

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 157 EDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRI-----PKGVLLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCIIFIDEIDAV 261


>gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus
           kaustophilus HTA426]
 gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III
           heat-shock) [Geobacillus kaustophilus HTA426]
          Length = 632

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           R + G  + K  +   +    +  +  A+L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 162 RDVAGADEEKEELVEIVE-FLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|66792806|ref|NP_473411.2| AFG3-like protein 1 [Mus musculus]
 gi|190356059|sp|Q920A7|AFG31_MOUSE RecName: Full=AFG3-like protein 1
 gi|34785223|gb|AAH56978.1| AFG3(ATPase family gene 3)-like 1 (yeast) [Mus musculus]
 gi|74198166|dbj|BAE35259.1| unnamed protein product [Mus musculus]
 gi|74204422|dbj|BAE39961.1| unnamed protein product [Mus musculus]
          Length = 789

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 301 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 358

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 359 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 410

Query: 136 DALVGKTATSNTREVF 151
             L G++   NT    
Sbjct: 411 GHLGGQSEQENTLNQM 426


>gi|323139857|ref|ZP_08074887.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394884|gb|EFX97455.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 619

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK ILLVGP G GKT ++R +A  AG
Sbjct: 161 DVAGVDEAKEELQEIVA--FLRDPATWGRLGAHIPKGILLVGPPGTGKTLLARAVAGEAG 218

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 219 VPFLSITGSEFVEM-FVGVGAARV-RDLFTQA 248


>gi|315651509|ref|ZP_07904530.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315486244|gb|EFU76605.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 624

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ +AK ++      L N  +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 169 KDVAGEDEAKESLTEIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
             A  PF  +  + F E+ +VG    ++ RDL  
Sbjct: 224 GEADVPFFSLSGSDFVEM-FVGVGASRV-RDLFK 255


>gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH]
 gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH]
          Length = 640

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  R  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 174 DDVAGNDEAKEEVKEIVDFLKHPDRYIELGAKI-----PKGVLLVGPPGTGKTLLAKAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEER 133
             A  PF  V  + F E+ +VG    ++ RDL + A          DE+       A   
Sbjct: 229 GEADVPFFAVSGSSFIEM-FVGVGAARV-RDLFNQAKKEAPSIIFIDEIDAIGKSRA--- 283

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
              A           +   + L + +  D   +  +   +++      P     G  +  
Sbjct: 284 ---AAGQFGGNDEREQTLNQLLAEMDGFDS-NEPVIVLAATNRPEVLDPALLRPGRFDRQ 339

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            L  K    GR + +++ V+K         + + +D+  + +
Sbjct: 340 VLVDKPDFEGRVQILQVHVKKIK-------AGKDVDLREIAK 374


>gi|218195010|gb|EEC77437.1| hypothetical protein OsI_16238 [Oryza sativa Indica Group]
          Length = 571

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR    V  + ++  +
Sbjct: 316 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAARVRDLFKEAKE 374

Query: 109 VAINIVRESRRDEV 122
            A +I+     D V
Sbjct: 375 AAPSIIFIDELDAV 388


>gi|308807935|ref|XP_003081278.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast
           precursor (ISS) [Ostreococcus tauri]
 gi|116059740|emb|CAL55447.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast
           precursor (ISS) [Ostreococcus tauri]
          Length = 662

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK   + V   L+N  +   L A +     PK  LLVGP G GKT I++ +A 
Sbjct: 190 DVAGVEGAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLIAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 245 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 277


>gi|70734331|ref|YP_257971.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
 gi|68348630|gb|AAY96236.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 632

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +   + R           +P+ +LLVGP G GKT +++ +A  A
Sbjct: 168 EDVAGIEEAKEELQEVV--SFLRSSDRFTAVGARIPRGVLLVGPPGTGKTLLAKAIAGEA 225

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + R   + +  IV     D V
Sbjct: 226 GVPFFSMSGSEFVEM-FVGVGASRVRDLFRKAKENSPCIVFIDEIDAV 272


>gi|305682341|dbj|BAJ16258.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 19/95 (20%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++ +    +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 7   DVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIME 66

Query: 281 GSSVSTK-----------YGSINTDHILFIASGAF 304
           G+                +  I+T ++LFI  GAF
Sbjct: 67  GTIALVPPQGGRKHPQQDFIQIDTTNMLFICGGAF 101



 Score = 41.1 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSN 146
            GYVG +VE II  L+  A   V  +++     DE+ + A  +    I   + G+     
Sbjct: 1   AGYVGEDVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 60

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNLSE 194
             ++    +            +      D +N   I GGA  GI  + E
Sbjct: 61  LLKIMEGTIALVPPQGGRKHPQQDFIQIDTTNMLFICGGAFTGIEKIIE 109


>gi|302836203|ref|XP_002949662.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
 gi|300265021|gb|EFJ49214.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f.
           nagariensis]
          Length = 692

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+     +    +R +    +   + PK  LLVGP G GKT +++ +A  AG
Sbjct: 222 DVAGVDEAKQDFMEIVE-FLKRPERFTAVGARI-PKGCLLVGPPGTGKTLLAKAIAGEAG 279

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  V  ++F E+ +VG     V  + +   + A  +V     D V
Sbjct: 280 VPFFSVSGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFIDEIDAV 325


>gi|156084264|ref|XP_001609615.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
 gi|154796867|gb|EDO06047.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
          Length = 706

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + KR +      L+N  + ++L A L     PK ILL GP G GKT ++R +A 
Sbjct: 235 DVKGCDEVKRELDDVVDYLKNPEKFERLGAKL-----PKGILLSGPPGTGKTLLARAIAG 289

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PFI+   ++F E+ +VG    +I R+L  +A
Sbjct: 290 EAGVPFIQASGSEFEEM-FVGVGARRI-RELFALA 322


>gi|148272023|ref|YP_001221584.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147829953|emb|CAN00878.1| cell division protein, membrane-bound ATP-dependent protease
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 666

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 165 DVAGSDEAIEELEEIKDFLKEPAKFQAVGARI-----PKGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|91775136|ref|YP_544892.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
 gi|91709123|gb|ABE49051.1| membrane protease FtsH catalytic subunit [Methylobacillus
           flagellatus KT]
          Length = 631

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPTKFQKLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGAARVRDMFEQAKKNAPCIVFIDEIDAV 258


>gi|74317151|ref|YP_314891.1| membrane protease FtsH catalytic subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056646|gb|AAZ97086.1| peptidase M41, FtsH [Thiobacillus denitrificans ATCC 25259]
          Length = 630

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     L++  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEDVAELVDFLKDPSKFQKLGGRI-----PRGVLMVGPPGTGKTLLARSIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKNAPCIIFIDEIDAV 258


>gi|89072569|ref|ZP_01159141.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
 gi|89051673|gb|EAR57126.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
          Length = 651

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|330888664|gb|EGH21325.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 490

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 11  DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 65

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 66  EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 101


>gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
 gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
          Length = 584

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 104 EKKKIRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 158

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 159 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 202


>gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
 gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001]
          Length = 644

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 30/186 (16%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVEEAKQDLEEVVTFLKTPERFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGVG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++V D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRADVLDSALLRPGRFDRQVQVDVPDIK 354

Query: 174 SDISNF 179
             +S  
Sbjct: 355 GRLSIL 360


>gi|254413594|ref|ZP_05027364.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179701|gb|EDX74695.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 612

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 158 DVAGIEQAKLELNEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A N 
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKNS 248


>gi|90580529|ref|ZP_01236334.1| putative cell division protein FtsH [Vibrio angustum S14]
 gi|90438187|gb|EAS63373.1| putative cell division protein FtsH [Photobacterium angustum S14]
          Length = 651

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 632

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  +   +   + R           +P+ +LLVGP G GKT +++ +A  A
Sbjct: 168 EDVAGIEEAKEELQEVV--SFLRSSDRFTAVGARIPRGVLLVGPPGTGKTLLAKAIAGEA 225

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + R   + +  IV     D V
Sbjct: 226 GVPFFSMSGSEFVEM-FVGVGASRVRDLFRKAKENSPCIVFIDEIDAV 272


>gi|312963089|ref|ZP_07777574.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
 gi|311282600|gb|EFQ61196.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
          Length = 636

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|117929326|ref|YP_873877.1| ATPase [Acidothermus cellulolyticus 11B]
 gi|117649789|gb|ABK53891.1| ATPase AAA-2 domain protein [Acidothermus cellulolyticus 11B]
          Length = 864

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R ++GQ+ A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 564 MEEELGRRVVGQEHAVRAVSDAV-----RRARSGIADPDRPTGSFLFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          +++++++++E   V R
Sbjct: 619 ALADFLFDDERAMVRIDMSEYSEKHSVAR 647


>gi|86152943|ref|ZP_01071148.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121612530|ref|YP_001000684.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005606|ref|ZP_02271364.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|85843828|gb|EAQ61038.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249291|gb|EAQ72252.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 538

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 260 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLP 319

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 320 DFKDRLKILEIYMKDKNNNVNLNKI 344


>gi|118581289|ref|YP_902539.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|310946754|sp|A1AT11|FTSH_PELPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118503999|gb|ABL00482.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
          Length = 623

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G +D+K   + V   LRN  +  ++        +PK +LLVGP G GKT ++R +A
Sbjct: 174 KDVAGMEDSKQELKEVVDYLRNPKQFARIGGK-----VPKGVLLVGPPGTGKTLLARAVA 228

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ +VG    ++ RDL   A
Sbjct: 229 GEAGVAFFSISASQFIEM-FVGVGASRV-RDLFTNA 262


>gi|329769333|ref|ZP_08260749.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
 gi|328839136|gb|EGF88721.1| hypothetical protein HMPREF0433_00513 [Gemella sanguinis M325]
          Length = 662

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K+ +A  +   ++  +  ++ A +     PK +LL GP G GKT ++R +A
Sbjct: 168 NDVAGADEEKQELAEMVEFLKDHRKFTKMGAKI-----PKGVLLEGPPGTGKTLLARAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 223 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFKEAEKN 259


>gi|319778415|ref|YP_004129328.1| Cell division protein FtsH [Taylorella equigenitalis MCE9]
 gi|317108439|gb|ADU91185.1| Cell division protein FtsH [Taylorella equigenitalis MCE9]
          Length = 592

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 115 DVAGVDEAKEDVQEIVEFLKDPSKYQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 169

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 170 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKH 205


>gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 610

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 153 EDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRI-----PKGVLLVGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCIIFIDEIDAV 257


>gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 636

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   +I RDL  VA
Sbjct: 380 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAARI-RDLFKVA 436


>gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
 gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
          Length = 632

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           R + G  + K  +   +    +  +  A+L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 162 RDVAGADEEKEELVEIVE-FLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|301156345|emb|CBW15816.1| protease, ATP-dependent zinc-metallo [Haemophilus parainfluenzae
           T3T1]
          Length = 618

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR   + Q L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 138 DVAGCDEAKEEVGEVVDFLREPKKFQNLGGKI-----PKGILMVGPPGTGKTLLAKAIAG 192

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 193 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 228


>gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana]
          Length = 687

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L+   +   L A +     PK +LL GP G GKT +++ +A
Sbjct: 223 EDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKI-----PKGVLLTGPPGTGKTLLAKAIA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 278 GEAGVPFFSLSGSEFIEM-FVGVGASRA-RDLFNKA 311


>gi|78188369|ref|YP_378707.1| peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
 gi|78170568|gb|ABB27664.1| Peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
          Length = 662

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L N  + Q++   +     PK +LL+GP G GKT +++ +A
Sbjct: 209 KDVAGVDEAIEELKETVEFLVNPEKFQKIGGKI-----PKGVLLLGPPGTGKTLLAKAIA 263

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 264 GEAKVPFFSMSGADFVEM-FVGVGASRV-RDLFEQAKKN 300


>gi|325578451|ref|ZP_08148586.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160187|gb|EGC72316.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 635

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR   + Q L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGEVVDFLREPKKFQNLGGKI-----PKGILMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 245


>gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 616

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   +I RDL + A
Sbjct: 359 RLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAARI-RDLFNAA 416


>gi|325276158|ref|ZP_08141963.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
 gi|324098695|gb|EGB96736.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
          Length = 634

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|319901125|ref|YP_004160853.1| ATP-dependent metalloprotease FtsH [Bacteroides helcogenes P
           36-108]
 gi|319416156|gb|ADV43267.1| ATP-dependent metalloprotease FtsH [Bacteroides helcogenes P
           36-108]
          Length = 675

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G   AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 191 KDVAGLAGAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 248

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +A   A   
Sbjct: 249 NVPFFSLAGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARAKAAAMGG 307

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 308 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 367

Query: 176 ISNFDIP 182
              F + 
Sbjct: 368 KEVFGVH 374


>gi|302531164|ref|ZP_07283506.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
 gi|302440059|gb|EFL11875.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
          Length = 864

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL+R +IGQ  A + VA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEEELNRRVIGQDQAIQVVADAV-----RRARAGVADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA           ++++++++E   V R V
Sbjct: 621 ALAEFLFDDERAMQRIDMSEYSEKHSVARLV 651


>gi|254521600|ref|ZP_05133655.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
 gi|219719191|gb|EED37716.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
          Length = 641

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVGELVDFLRDPSKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 252


>gi|218197842|gb|EEC80269.1| hypothetical protein OsI_22249 [Oryza sativa Indica Group]
          Length = 681

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 16/128 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K  F   P+  V+     + G  +AK+    +   L+   +   + A       PK +LL
Sbjct: 202 KAKFQMEPKTGVTF--DDVAGVDEAKQDFQEIVQFLKFPEKFTAVGA-----RTPKGVLL 254

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIV 114
           VGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D     A  +V
Sbjct: 255 VGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFDRPKASAPCLV 312

Query: 115 RESRRDEV 122
                D V
Sbjct: 313 FIDEIDAV 320


>gi|188589992|ref|YP_001919612.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780453|ref|ZP_04823373.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500273|gb|ACD53409.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084768|gb|EES50658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 601

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   +  ++ A +     PK +LLVGP G GKT +++ ++
Sbjct: 159 KDVAGADEEKAELEEIVDFLKTPSKYIEIGARI-----PKGVLLVGPPGTGKTLLAKAIS 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +  D    A  ++     D V
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKNAPCLIFIDEIDAV 263


>gi|15888690|ref|NP_354371.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
 gi|15156428|gb|AAK87156.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 836

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A A++         A LR+   P  + +  GPTGVGKT ++
Sbjct: 469 LEKELRSVVYGQDIAIEALATAIK------LARAGLREPNKPIGSYVFSGPTGVGKTEVA 522

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 523 KQLAASLGVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHS 576


>gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 618

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 672

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G ++AK  +   +       R++R           +PK +LLVGP G GKT +++ +
Sbjct: 205 DVAGAEEAKTELVEIVEFLKDPERFKRIGA-------RIPKGVLLVGPPGTGKTLLAKAV 257

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 258 AGEAGVTFFSISASEFVEL-FVGTGAARV-RDLFEQA 292


>gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
 gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
          Length = 618

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      L+N  +   L   L     PK +LLVGP G GKT ++R +A
Sbjct: 146 KDVHGCEEAKEELQDLVEFLKNPDKFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVA 200

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 201 GEAGVPFFYMSGSEFEEV-FVGVGARRV-RDLFTAA 234


>gi|194365245|ref|YP_002027855.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
 gi|194348049|gb|ACF51172.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
          Length = 644

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 165 DVAGCDEAKEEVGELVDFLRDPSKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 220 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 255


>gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
 gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1]
          Length = 728

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++A    R V   L+N  + Q L   +     PK +LLVGP G GKT +++ +A
Sbjct: 251 EDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIA 305

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+   A+N 
Sbjct: 306 GEAGVPFFSLSGSDFVEM-FVGVGAARV-RDMFTQAVNR 342


>gi|152979124|ref|YP_001344753.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes
           130Z]
 gi|150840847|gb|ABR74818.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes
           130Z]
          Length = 650

 Score = 64.6 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G GKT I++ +A 
Sbjct: 153 DVAGCDEAKEEVGEIVEFLRDPGKFQKLGGKI-----PKGILMVGPPGTGKTLIAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 208 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKN 243


>gi|332707340|ref|ZP_08427390.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353831|gb|EGJ33321.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 597

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 142 DVAGIEQAKLELNEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 196

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A N 
Sbjct: 197 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKNN 232


>gi|326794263|ref|YP_004312083.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
 gi|326545027|gb|ADZ90247.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
          Length = 654

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K      P + +      + G  +AK     +   LR   + Q+L   +     P+ IL+
Sbjct: 141 KSKARLLPEDQIKTTFADVAGCDEAKEDTEELVDFLREPSKFQRLGGKI-----PRGILM 195

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 196 AGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 646

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 96/251 (38%), Gaps = 52/251 (20%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  +  +L A +     PK +LL+GP G GKT +++ +A
Sbjct: 170 EDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKI-----PKGVLLIGPPGTGKTLLAKAIA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ +VG    ++ RDL D A            + QA        
Sbjct: 225 GEAGVPFFSISGSEFIEL-FVGIGASRV-RDLFDQA------------KTQAPCIVFIDE 270

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLS 193
           LDAL    A                  + E +  +    +++  FD   G   +   N  
Sbjct: 271 LDALGKSRANMGGMI----------GGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRP 320

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF---LD 250
           E+    +    +   ++ V +                D   R++I  V  + +     +D
Sbjct: 321 EVLDPALLRPGRFDRQIVVDR---------------PDKSGREAILRVHAHDVRLAPDVD 365

Query: 251 EFDKIVARDSG 261
             DK+ AR  G
Sbjct: 366 -LDKLAARTPG 375


>gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/
           metallopeptidase/ peptidase/ zinc ion binding
           [Arabidopsis thaliana]
 gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6,
           chloroplastic; Short=AtFTSH6; Flags: Precursor
 gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana]
 gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana]
          Length = 688

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L+   +   L A +     PK +LL GP G GKT +++ +A
Sbjct: 224 EDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKI-----PKGVLLTGPPGTGKTLLAKAIA 278

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    +  RDL + A
Sbjct: 279 GEAGVPFFSLSGSEFIEM-FVGVGASRA-RDLFNKA 312


>gi|16126707|ref|NP_421271.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter
           crescentus CB15]
 gi|221235489|ref|YP_002517926.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter
           crescentus NA1000]
 gi|13424017|gb|AAK24439.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter
           crescentus CB15]
 gi|220964662|gb|ACL96018.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter
           crescentus NA1000]
          Length = 776

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ S+L R + GQ +A   +A A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 462 KELESDLKRAVFGQDEALSQLAAAMK------LARAGLREPNKPIGSYLFSGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            +++LA+  G   ++ +++++ E            GYVG +    + D VD   +
Sbjct: 516 AAKQLAQTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGQLTDAVDQHPH 570


>gi|124266461|ref|YP_001020465.1| membrane protease FtsH catalytic subunit [Methylibium
           petroleiphilum PM1]
 gi|124259236|gb|ABM94230.1| membrane protease FtsH catalytic subunit [Methylibium
           petroleiphilum PM1]
          Length = 640

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLAKAIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKSAPCIIFVDEIDAV 265


>gi|295109828|emb|CBL23781.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 536

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK     +   L N  +  ++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 86  DVAGEDEAKDLLTEIVDYLHNPQKYTEIGASM-----PKGALLVGPPGTGKTLLAKAVAG 140

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 141 EAEVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 174


>gi|291542951|emb|CBL16061.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
           bromii L2-63]
          Length = 780

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 20/102 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ +EL + IIGQ +A +A+A A+R    R Q+    R    P + + VGPTGVGKT + 
Sbjct: 482 DLENELKKKIIGQDEAVKALASAIR--RSRVQISPRRR----PASFIFVGPTGVGKTELV 535

Query: 71  RRLARLA-GAP--FIKVEVTKFTEI-----------GYVGRN 98
           + L++     P   I++++++F E            GYVG +
Sbjct: 536 KVLSKELFDTPETLIRLDMSEFMEKHSVSKIIGSPPGYVGYD 577


>gi|254508226|ref|ZP_05120350.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
 gi|219548843|gb|EED25844.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
          Length = 655

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|223936532|ref|ZP_03628443.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894696|gb|EEF61146.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 653

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L+N  R + L A +     PK +LLVGP G GKT +++ +A
Sbjct: 188 NDVAGCDEAKYELQEVVDFLKNPNRYKSLGAKI-----PKGVLLVGPPGTGKTLLAKAVA 242

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 243 GEAQVPFFSISGSDFVEM-FVGVGAARV-RDLFVQA 276


>gi|108760095|ref|YP_632507.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
 gi|108463975|gb|ABF89160.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
          Length = 674

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A    R +   L+   + ++L   +     PK +LLVGP G GKT ++R +A
Sbjct: 190 KDVAGVDEAVDELREIVEFLKTPEKFRRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 245 GEAGVPFFSLSGSEFVEM-FVGVGAARV-RDLFAQA 278


>gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH
           391-98]
          Length = 639

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|319793959|ref|YP_004155599.1| ATP-dependent metalloprotease ftsh [Variovorax paradoxus EPS]
 gi|315596422|gb|ADU37488.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus EPS]
          Length = 638

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   R V   L++  R Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVREVVDFLKDPQRFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|262196734|ref|YP_003267943.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
 gi|310943130|sp|D0LWB8|FTSH_HALO1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|262080081|gb|ACY16050.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365]
          Length = 682

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  V      L++  +  +L   +     PK +L++GP G GKT ++R +A
Sbjct: 192 KDVAGVEEAKDEVEEIIAFLKDPKKFTRLGGRI-----PKGVLMMGPPGTGKTLLARAIA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 247 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 296


>gi|157827821|ref|YP_001496885.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
 gi|157803125|gb|ABV79848.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKDELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|91206208|ref|YP_538563.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii RML369-C]
 gi|123084542|sp|Q1RGP0|FTSH_RICBR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|91069752|gb|ABE05474.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii RML369-C]
          Length = 638

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  + Q+L   +     PK  LL+GP G GKT +++ +A
Sbjct: 155 KDVAGIDEAKDELTEIVDFLRDPSKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKRNAPCIIFIDEIDAV 259


>gi|33861300|ref|NP_892861.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633877|emb|CAE19202.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 31/262 (11%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKEDLEEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLAGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQ------ 288

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGIL 190
            R      G      T      ++   E +   I I   +    + S    PG     + 
Sbjct: 289 -RGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVT 347

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTVHRDSIQMV 241
             +      +          ++Q+           P     +   L++   +   + +  
Sbjct: 348 VDAPDIKGRLSILEVHSKNKTLQEDLTLESIARRTPGFTGADLANLLNEAAILT-ARRRK 406

Query: 242 ENYGIVFL-DEFDKIVARDSGN 262
           E+ GI+ + D  D+IVA   G+
Sbjct: 407 ESIGILEIDDSVDRIVAGMEGS 428


>gi|21232500|ref|NP_638417.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767416|ref|YP_242178.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990519|ref|YP_001902529.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris
           str. B100]
 gi|54035864|sp|Q8P6A0|CLPB_XANCP RecName: Full=Chaperone protein ClpB
 gi|21114288|gb|AAM42341.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572748|gb|AAY48158.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732279|emb|CAP50471.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
          Length = 861

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R ++GQ++A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHRRVVGQEEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVSR 645


>gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 613

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|190573712|ref|YP_001971557.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011634|emb|CAQ45253.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
          Length = 646

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 167 DVAGCDEAKEEVGELVDFLRDPSKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 222 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 257


>gi|171463557|ref|YP_001797670.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193095|gb|ACB44056.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 621

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     P  +LLVGP G GKT ++R +A 
Sbjct: 151 DVAGCDEAKEEVFELVDFLKDPQKFQKLGGRI-----PHGVLLVGPPGTGKTLLARAIAG 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 206 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFENAKKN 241


>gi|117923752|ref|YP_864369.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1]
 gi|310943137|sp|A0L4S0|FTSH_MAGSM RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|117607508|gb|ABK42963.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1]
          Length = 673

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +      L++  + Q+L   +     PK +LLVGP G GKT ++R +A
Sbjct: 154 QDVAGIEEAKEELQEVVQFLKDPHKFQRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 GEANVPFFNLSGSDFVEM-FVGVGAARVRDMFEQGKKNAPCIIFIDEIDAV 258


>gi|323492036|ref|ZP_08097201.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
 gi|323313765|gb|EGA66864.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
          Length = 654

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|307297687|ref|ZP_07577493.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916947|gb|EFN47329.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 633

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 36/268 (13%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKN 55
            TF  SP +     D+      + G  +A++ +A  +       + P+   D    MPK 
Sbjct: 142 FTFTKSPAKKYVNTDKRVTFKDVAGVDEAQQELADIV----SYLKDPSIFADTGARMPKG 197

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAIN 112
           +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG     V  +       A +
Sbjct: 198 LLLVGPPGTGKTLLARAVAGEAGVPFFFISGSDFVEL-FVGVGAARVRDLFTQAKSSAPS 256

Query: 113 IVRESRRDEV-REQA---------SINAEERILDALVGKTAT--------SNTREVFRKK 154
           I+     D V R +                +IL  + G  A         +N  ++  K 
Sbjct: 257 ILFIDEIDAVGRHRGAGLGGGHDEREQTLNQILVEMDGFDAKTGVIVIAATNRPDILDKA 316

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L      DK+I ++  D         I   G  +      +L ++         +   + 
Sbjct: 317 LLRPGRFDKKISVDPPDLKGRSEILKIHMRGKPIDPEVDVQLLARRTPGFVGADLENLIN 376

Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMV 241
           +    L   +  ++I M  +  ++I  V
Sbjct: 377 EAA-ILSARKKKKMIGMAEL-EEAIDRV 402


>gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
          Length = 646

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 96/251 (38%), Gaps = 52/251 (20%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  +  +L A +     PK +LL+GP G GKT +++ +A
Sbjct: 170 EDVAGVDEAKTELQEIVDFLKSAEKYTRLGAKI-----PKGVLLIGPPGTGKTLLAKAIA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ +VG    ++ RDL D A            + QA        
Sbjct: 225 GEAGVPFFSISGSEFIEL-FVGIGASRV-RDLFDQA------------KTQAPCIVFIDE 270

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLS 193
           LDAL    A                  + E +  +    +++  FD   G   +   N  
Sbjct: 271 LDALGKSRANMGGMI----------GGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRP 320

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF---LD 250
           E+    +    +   ++ V +                D   R++I  V  + +     +D
Sbjct: 321 EVLDPALLRPGRFDRQIVVDR---------------PDKSGREAILRVHAHDVRLAPDVD 365

Query: 251 EFDKIVARDSG 261
             DK+ AR  G
Sbjct: 366 -LDKLAARTPG 375


>gi|119476067|ref|ZP_01616419.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143]
 gi|119450694|gb|EAW31928.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143]
          Length = 641

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G + AK+ +   +       + PA  R+    MPK IL++GP G GKT ++R  A  
Sbjct: 197 DVAGLESAKQDLQEII----SFLKEPAHYRELGAKMPKGILMMGPPGCGKTLLARATAGE 252

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  V  ++F E+ +VG    ++ RD+ + A
Sbjct: 253 AGVPFFSVSGSEFIEM-FVGVGASRV-RDMFNNA 284


>gi|108805004|ref|YP_644941.1| FtsH-2 peptidase [Rubrobacter xylanophilus DSM 9941]
 gi|108766247|gb|ABG05129.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rubrobacter
           xylanophilus DSM 9941]
          Length = 627

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A + +      L N  + Q+L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEAVQELTEIKEFLENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 221 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 253


>gi|91201703|emb|CAJ74763.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 135

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ++A +AV++A+R         ADL +   P  + L +GPTGVGKT ++
Sbjct: 20  MEEKLHERVIGQEEAVKAVSLAVR------LSRADLCEVSKPIASFLFLGPTGVGKTELA 73

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA +        ++++++++ E   V R
Sbjct: 74  KALAEMVFGDEDAMVRIDMSEYMEKHAVAR 103


>gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 616

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  +A     L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 162 DVAGIEQAKLELAEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 249


>gi|259484950|tpe|CBF81608.1| TPA: intermembrane space AAA protease IAP-1 (AFU_orthologue;
           AFUA_4G11530) [Aspergillus nidulans FGSC A4]
          Length = 784

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 316 DVHGCDEAKDELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 370

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L + A +               ++R+E   
Sbjct: 371 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQARSKSPAIIFIDELDAIGAKRNERDA 428

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G +        A +N  E+  K L      D+++ +++ D    +
Sbjct: 429 AYVKQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGRM 488

Query: 177 SNF 179
              
Sbjct: 489 DIL 491


>gi|225158869|ref|ZP_03725184.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2]
 gi|224802561|gb|EEG20818.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2]
          Length = 709

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  ++     L++  + Q++   +     PK ILLVGP G GKT +++ +A  
Sbjct: 224 VAGCDEAKEEISEVVEFLKDPKKFQKMGGKI-----PKGILLVGPPGTGKTLLAKAVAGE 278

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  PF  V  + F E+ +VG     V  +       A  I+     D V
Sbjct: 279 AEVPFFSVSGSDFVEM-FVGVGASRVRDMFEQGRKNAPCIIFIDEIDAV 326


>gi|239815605|ref|YP_002944515.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus S110]
 gi|239802182|gb|ACS19249.1| ATP-dependent metalloprotease FtsH [Variovorax paradoxus S110]
          Length = 638

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   R V   L++  R Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVREVVDFLKDPQRFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|188584528|ref|YP_001927973.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium populi BJ001]
 gi|179348026|gb|ACB83438.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium populi BJ001]
          Length = 832

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIK------LARAGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 573


>gi|324506472|gb|ADY42762.1| AFG3-like protein 2 [Ascaris suum]
          Length = 794

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 301 KDVAGCEEAKIEIMEFV-NFLKNPQQYKNLGAKI-PKGAILTGPPGTGKTLLAKATAGEA 358

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       +  I+     D V  +
Sbjct: 359 NVPFITVSGSEFLEM-FVGVGPARVRDMFAMARKNSPCILFIDEIDAVGRK 408


>gi|325292724|ref|YP_004278588.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Agrobacterium
           sp. H13-3]
 gi|325060577|gb|ADY64268.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Agrobacterium
           sp. H13-3]
          Length = 838

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A A++         A LR+   P  + +  GPTGVGKT ++
Sbjct: 469 LEKELRSVVYGQDIAIEALATAIK------LARAGLREPNKPIGSYVFSGPTGVGKTEVA 522

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 523 KQLAASLGVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHS 576


>gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb18]
          Length = 813

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 346 DVHGCDEAKEELQELVEFLTNPERFNSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 400

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 401 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 433


>gi|295669392|ref|XP_002795244.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
 gi|226285178|gb|EEH40744.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
          Length = 813

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 346 DVHGCDEAKEELQELVEFLTNPERFNSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 400

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 401 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 433


>gi|21672643|ref|NP_660710.1| cell division protein FtsH [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008486|sp|Q8K9G8|FTSH_BUCAP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|21623278|gb|AAM67921.1| cell division [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 613

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEHARKSAPCIIFIDEIDAV 256


>gi|326429238|gb|EGD74808.1| caseinolytic protease C [Salpingoeca sp. ATCC 50818]
          Length = 659

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 27/122 (22%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L +Y++GQ     AVA A+R R           DE  P   L +G +GVGKT +++
Sbjct: 284 LEERLHQYVVGQDGPIMAVAAAVRRR------ENGWHDEDHPLVFLFLGSSGVGKTELAK 337

Query: 72  RLARLAGAP----------FIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVA 110
           RLA+               FI++++T++ E            GYVG +    +  ++   
Sbjct: 338 RLAQYIHHDEKATSNRSKGFIRLDMTEYQEKHEAAKLIGAPPGYVGHDEGGQLTKMLKSC 397

Query: 111 IN 112
            N
Sbjct: 398 PN 399


>gi|295702308|ref|YP_003595383.1| cell division protease FtsH [Bacillus megaterium DSM 319]
 gi|294799967|gb|ADF37033.1| cell division protease FtsH [Bacillus megaterium DSM 319]
          Length = 636

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 164 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 221

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 222 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 255


>gi|153871085|ref|ZP_02000345.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Beggiatoa sp.
           PS]
 gi|152072451|gb|EDN69657.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Beggiatoa sp.
           PS]
          Length = 761

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 97/255 (38%), Gaps = 29/255 (11%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + I  +L   + GQ +A   +A A++              E    + L  GPTGVGKT
Sbjct: 453 TLKNIERDLKMVVFGQDEAIGNLAQAIK-----MSRSGLGNVEKPIGSFLFAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++R+LAR+     ++ +++++ E            GY+G +   ++ + ++   + V  
Sbjct: 508 EVTRQLARIMAIELVRFDMSEYMERHTVSRLIGAPPGYIGFDQGGLLTEAINKTPHAVL- 566

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV E+A  +    +L  +   + T           R  +     I +     +   
Sbjct: 567 -LLDEV-EKAHPDVFNLLLQVMDHGSLTDTNG-------RKTDFRHVVIVMTTNAGAMQA 617

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           S   +         ++ E   +      + ++   VQ  +  L       ++D   +  +
Sbjct: 618 SRTAVGFNPQDHSTDMMEAIKRTFTPEFRNRLDSIVQ--FKPLAPQSIGHVVDKFIIELE 675

Query: 237 SIQMVENYGIVFLDE 251
           + Q+ +    + +DE
Sbjct: 676 A-QLADKNVTITVDE 689


>gi|167035710|ref|YP_001670941.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
 gi|166862198|gb|ABZ00606.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
          Length = 634

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|305682337|dbj|BAJ16256.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682343|dbj|BAJ16259.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682347|dbj|BAJ16261.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682349|dbj|BAJ16262.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
 gi|305682351|dbj|BAJ16263.1| ATP-dependent Clp protease ATP-binding subunit [Orientia
           tsutsugamushi]
          Length = 145

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 19/95 (20%)

Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVE 280
           D++ +    +Q  +        GI+++DE DKI  +     I   VS EGVQ+ LL ++E
Sbjct: 7   DVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIME 66

Query: 281 GSSVST-----------KYGSINTDHILFIASGAF 304
           G+               ++  I+T ++LFI  GAF
Sbjct: 67  GTIALVPPQGGRKHPQQEFIQIDTTNMLFICGGAF 101



 Score = 41.8 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 92  IGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATSN 146
            GYVG +VE II  L+  A   V  +++     DE+ + A  +    I   + G+     
Sbjct: 1   AGYVGEDVENIILRLLQAADFNVERAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 60

Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNLSE 194
             ++    +            +      D +N   I GGA  GI  + E
Sbjct: 61  LLKIMEGTIALVPPQGGRKHPQQEFIQIDTTNMLFICGGAFTGIEKIIE 109


>gi|294340418|emb|CAZ88799.1| Cell division protease ftsH [Thiomonas sp. 3As]
          Length = 635

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLAKSIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGAARV-RDMFENAKKH 247


>gi|329894887|ref|ZP_08270686.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC3088]
 gi|328922616|gb|EGG29951.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC3088]
          Length = 764

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +  ++ S L   + GQ  A   ++ A++             +     + LL GPTGVGKT
Sbjct: 451 TLEKLESNLKMVVFGQDKAVSELSSAIK-----LARAGLKSEHKPIGSFLLAGPTGVGKT 505

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LA + G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 506 EVTRQLATMLGLELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVTKHPH 561


>gi|262393376|ref|YP_003285230.1| cell division protein FtsH [Vibrio sp. Ex25]
 gi|262336970|gb|ACY50765.1| cell division protein FtsH [Vibrio sp. Ex25]
          Length = 660

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 146 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 258

Query: 121 EV 122
            V
Sbjct: 259 AV 260


>gi|296136183|ref|YP_003643425.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
 gi|295796305|gb|ADG31095.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12]
          Length = 635

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLAKSIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGAARV-RDMFENAKKH 247


>gi|148549786|ref|YP_001269888.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|148513844|gb|ABQ80704.1| membrane protease FtsH catalytic subunit [Pseudomonas putida F1]
 gi|313500627|gb|ADR61993.1| FtsH [Pseudomonas putida BIRD-1]
          Length = 634

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|327537415|gb|EGF24144.1| cell division protein FtsH [Rhodopirellula baltica WH47]
          Length = 728

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++A    R V   L+N  + Q L   +     PK +LLVGP G GKT +++ +A
Sbjct: 251 EDVAGIEEAVDEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIA 305

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RD+   A+N 
Sbjct: 306 GEAGVPFFSLSGSDFVEM-FVGVGAARV-RDMFTQAVNR 342


>gi|323497767|ref|ZP_08102781.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
 gi|323317114|gb|EGA70111.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
          Length = 655

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|299116091|emb|CBN74507.1| Yme1 homolog, mitochondrial inner membrane i-AAA protease
           [Ectocarpus siliculosus]
          Length = 748

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G  +AK     + + L+N     +L   L     P+ ++L GP G GKT ++R +A
Sbjct: 280 DDVVGVDEAKSELEEIVMYLKNPQMFTRLGGKL-----PRGLMLTGPPGTGKTLLARAIA 334

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     ++F E+ +VG   +++ R+L   A
Sbjct: 335 GEAGVPFYYSSGSEFEEM-FVGVGAKRV-RELFAAA 368


>gi|217965694|ref|YP_002351372.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|217334964|gb|ACK40758.1| cell division protein FtsH [Listeria monocytogenes HCC23]
 gi|307569759|emb|CAR82938.1| ATP-dependent metalloprotease [Listeria monocytogenes L99]
          Length = 690

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|156975669|ref|YP_001446576.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
 gi|156527263|gb|ABU72349.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 143 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 197 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|330889672|gb|EGH22333.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 757

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              E    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPEKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|254436354|ref|ZP_05049860.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|207088044|gb|EDZ65317.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 638

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 89/269 (33%), Gaps = 46/269 (17%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR   R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 154 DVAGCDEAKEEVQELVEFLREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V  Q       
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQ------- 260

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILN 191
           R      G      T      ++   E ++  I I   +    +      PG     ++ 
Sbjct: 261 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDRQVVV 320

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPE-----------------LMRDES-------DRL 227
                       +    ++ V +                     L+ + +        RL
Sbjct: 321 SLPDIRGRAQILKVHLRKVPVAEDVEPALIARGTPGFSGADLANLVNEAALFAARGSKRL 380

Query: 228 IDMDTV--HRDSIQMVENYGIVFLDEFDK 254
           +DM  +   +D I M        + E DK
Sbjct: 381 VDMQDLEQAKDKILMGVERRSAVMSEDDK 409


>gi|118382640|ref|XP_001024476.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|89306243|gb|EAS04231.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 884

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + GQ +AK+ V   + +  +       L    MPK  LL GP G GKT +++  A  +G
Sbjct: 398 DVAGQAEAKKEVMEFV-DFLKHPSKYEGLGA-KMPKGALLTGPPGTGKTLLAKACAGESG 455

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F ++ YVG    ++ R L + A
Sbjct: 456 VPFFFMSGSDFVQM-YVGVGSSRV-RQLFEAA 485


>gi|26991401|ref|NP_746826.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida KT2440]
 gi|24986470|gb|AAN70290.1|AE016669_8 cell division protein FtsH [Pseudomonas putida KT2440]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|6539504|dbj|BAA88164.1| FtsH2 [Cyanidioschyzon merolae]
          Length = 920

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 20  IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK     +   LR+  + + L A +     PK  LLVGP G GKT +++ +A  
Sbjct: 405 VAGLDEAKMEVMELVDFLRDPKKYKDLGAKI-----PKGALLVGPPGTGKTLLAKAVAGE 459

Query: 77  AGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
           A  PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 460 ADVPFFSMSGSDFIEM-FVGIRPSRVRDLFAQARQNAPCIVFIDEIDAV 507


>gi|28899237|ref|NP_798842.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807461|dbj|BAC60726.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|328474228|gb|EGF45033.1| cell division protein FtsH [Vibrio parahaemolyticus 10329]
          Length = 662

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 146 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 258

Query: 121 EV 122
            V
Sbjct: 259 AV 260


>gi|146341454|ref|YP_001206502.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Bradyrhizobium sp. ORS278]
 gi|146194260|emb|CAL78282.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Bradyrhizobium sp. ORS278]
          Length = 795

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  +++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRVVFGQDKAIDSLSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLASTLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|160900357|ref|YP_001565939.1| ATP-dependent metalloprotease FtsH [Delftia acidovorans SPH-1]
 gi|160365941|gb|ABX37554.1| ATP-dependent metalloprotease FtsH [Delftia acidovorans SPH-1]
          Length = 640

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|77166027|ref|YP_344552.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|76884341|gb|ABA59022.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 641

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 89/269 (33%), Gaps = 46/269 (17%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR   R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 157 DVAGCDEAKEEVQELVEFLREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V  Q       
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRQ------- 263

Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILN 191
           R      G      T      ++   E ++  I I   +    +      PG     ++ 
Sbjct: 264 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDRQVVV 323

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPE-----------------LMRDES-------DRL 227
                       +    ++ V +                     L+ + +        RL
Sbjct: 324 SLPDIRGRAQILKVHLRKVPVAEDVEPALIARGTPGFSGADLANLVNEAALFAARGSKRL 383

Query: 228 IDMDTV--HRDSIQMVENYGIVFLDEFDK 254
           +DM  +   +D I M        + E DK
Sbjct: 384 VDMQDLEQAKDKILMGVERRSAVMSEDDK 412


>gi|307546734|ref|YP_003899213.1| ATP-dependent metalloprotease FtsH [Halomonas elongata DSM 2581]
 gi|307218758|emb|CBV44028.1| ATP-dependent metalloprotease FtsH [Halomonas elongata DSM 2581]
          Length = 660

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L        +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVEELVDFLRDPTKFQRLGG-----TIPRGVLMVGPPGTGKTLLAKSIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EASVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|254825866|ref|ZP_05230867.1| FtsH [Listeria monocytogenes FSL J1-194]
 gi|293595105|gb|EFG02866.1| FtsH [Listeria monocytogenes FSL J1-194]
          Length = 691

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|226222849|ref|YP_002756956.1| cell division protein ftsH [Listeria monocytogenes Clip81459]
 gi|225875311|emb|CAS04008.1| Putative cell division protein ftsH [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 695

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|163854198|ref|YP_001642241.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium extorquens PA1]
 gi|218533143|ref|YP_002423959.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Methylobacterium chloromethanicum CM4]
 gi|254564166|ref|YP_003071261.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens DM4]
 gi|163665803|gb|ABY33170.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium extorquens PA1]
 gi|218525446|gb|ACK86031.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium chloromethanicum CM4]
 gi|254271444|emb|CAX27459.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens DM4]
          Length = 827

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIK------LARAGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 573


>gi|153813584|ref|ZP_01966252.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174]
 gi|149830329|gb|EDM85421.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174]
          Length = 630

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +AK     +   L N  +  ++ A +     PK  LLVGP G GKT +++ +A 
Sbjct: 172 DVAGEDEAKDLLTEIVDYLHNPQKYTEIGASM-----PKGALLVGPPGTGKTLLAKAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A  PF  +  ++F E+ +VG    ++ RDL   A 
Sbjct: 227 EAEVPFFSISGSEFVEM-FVGMGAAKV-RDLFKQAN 260


>gi|254933060|ref|ZP_05266419.1| FtsH [Listeria monocytogenes HPB2262]
 gi|254992585|ref|ZP_05274775.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           J2-064]
 gi|21667250|gb|AAM74002.1|AF467001_3 FtsH [Listeria monocytogenes]
 gi|293584618|gb|EFF96650.1| FtsH [Listeria monocytogenes HPB2262]
          Length = 687

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|78187991|ref|YP_378329.1| peptidase M41, FtsH [Chlorobium chlorochromatii CaD3]
 gi|78170190|gb|ABB27286.1| membrane protease FtsH catalytic subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 699

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  V      L++  +   L   L     PK +LLVGP G GKT +++ +A
Sbjct: 177 KDVAGLDEAKAEVMEVVDFLKDPKKYTTLGGKL-----PKGVLLVGPPGTGKTLLAKAVA 231

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 232 GEADVPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDEIDAV 281


>gi|158313819|ref|YP_001506327.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158109224|gb|ABW11421.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 659

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 22/130 (16%)

Query: 19  YIIGQQDAKRAVA--IA-LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK+ ++  +A LRN  +  ++ A       P+ +L+VGP G GKT ++R +A 
Sbjct: 189 DVAGYEGAKQEISEVVAFLRNPDQYLEVGAH-----GPRGVLMVGPPGTGKTLLARAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF+ +  + F E+ +VG    ++ RDL   A            R++A        +
Sbjct: 244 EAEVPFLSITGSGFVEM-FVGVGASRV-RDLFTEA------------RKRAPSIIFIDEI 289

Query: 136 DALVGKTATS 145
           DA+ G+  +S
Sbjct: 290 DAIGGRRGSS 299


>gi|46906452|ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093162|ref|ZP_00230937.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|46879716|gb|AAT03018.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47018469|gb|EAL09227.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b
           H7858]
 gi|328467976|gb|EGF39003.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes 1816]
 gi|332310629|gb|EGJ23724.1| ATP-dependent zinc metalloprotease FtsH [Listeria monocytogenes
           str. Scott A]
          Length = 691

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|269103412|ref|ZP_06156109.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163310|gb|EEZ41806.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 649

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 257


>gi|183600360|ref|ZP_02961853.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
 gi|188020151|gb|EDU58191.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
          Length = 656

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   R Q+L   +     PK +L+VGP G
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGEIVDFLREPARFQKLGGKI-----PKGVLMVGPPG 195

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 254

Query: 121 EV 122
            V
Sbjct: 255 AV 256


>gi|110749420|ref|XP_624548.2| PREDICTED: AFG3-like protein 2-like [Apis mellifera]
          Length = 803

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 301 KDVAGCEEAKIEIMEFV-NFLKNPQQYMELGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 358

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 359 NVPFISVSGSEFLEM-FVGVGPSRVRDMFALARKHAPCILFIDEIDAVGRK 408


>gi|10442010|gb|AAG17282.1|AF254897_1 ClpA-like protein [Bradyrhizobium japonicum USDA 110]
          Length = 802

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  ++A +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRTVFGQDKAIESLAASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|296329571|ref|ZP_06872057.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672768|ref|YP_003864439.1| cell division protein and general stress protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296153314|gb|EFG94177.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411011|gb|ADM36129.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT +++  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLAKACAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|294496941|ref|YP_003560641.1| cell division protease FtsH [Bacillus megaterium QM B1551]
 gi|294346878|gb|ADE67207.1| cell division protease FtsH [Bacillus megaterium QM B1551]
          Length = 636

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 164 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 221

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 222 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 255


>gi|240141658|ref|YP_002966138.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens AM1]
 gi|240011635|gb|ACS42861.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Methylobacterium
           extorquens AM1]
          Length = 827

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 464 KNLTENLKRVVYGQTNAIEALTSAIK------LARAGLRDPDKPIGSYLFAGPTGVGKTE 517

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            +++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 518 AAKQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 573


>gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 616

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 138 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARI-----PKGVLLVGPPGTGKT 192

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 193 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 236


>gi|218437468|ref|YP_002375797.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218170196|gb|ACK68929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 655

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 91/260 (35%), Gaps = 29/260 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 203 EDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAIA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A  PF  +  ++F E+ +VG     V  + +   + A  +V     D V  Q      
Sbjct: 258 GEAAVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQ------ 310

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS--DISNFDIPGGASVGI 189
            R +    G      T      ++   E ++  I I   +     D++           +
Sbjct: 311 -RGVSYGGGNDEREQTLNQLLTEMDGFEGNNGIIIIAATNRPDVLDVALMRPGRFDRQVM 369

Query: 190 LNLSELFSKVMGSGRKKKIRMS--------VQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           ++  ++  ++       + +          + +  P     +   +++   +     +  
Sbjct: 370 VDYPDMKGRLGILEVHSRNKKVDPGVSLEAIARRTPGFTGADLANVLNEAAIFTGRRRKE 429

Query: 242 ENYGIVFLDEFDKIVARDSG 261
                   D  D++VA   G
Sbjct: 430 AITTQEINDAIDRVVAGMEG 449


>gi|167520322|ref|XP_001744500.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776831|gb|EDQ90449.1| predicted protein [Monosiga brevicollis MX1]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 26/203 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G ++AK  +   + N  +  +    L  ++ PK  +L GP G GKT +++  A  A  
Sbjct: 139 VAGCEEAKVEIMEFV-NFLKNPEQYERLGAKI-PKGAILSGPPGTGKTLLAKATAGEADV 196

Query: 80  PFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA--------- 126
           PF  +  ++F E+ +VG     V  +  +    A  I+     D V R ++         
Sbjct: 197 PFYSISGSEFLEM-FVGVGPARVRDLFAEARKNAPCIIFIDEIDAVGRARSKSGGFGGGN 255

Query: 127 --SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G  ++        +N  +V    L      D++I I++ D     
Sbjct: 256 DERENTLNQMLVEMDGMNSSDSVVVLAGTNRPDVLDPALLRPGRFDRQITIDLPDIKGRR 315

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F++     +  L+ ++L  K+
Sbjct: 316 SIFNVHLKPILASLDKADLAKKL 338


>gi|254854450|ref|ZP_05243798.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300766353|ref|ZP_07076312.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
 gi|258607850|gb|EEW20458.1| FtsH [Listeria monocytogenes FSL R2-503]
 gi|300512952|gb|EFK40040.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL
           N1-017]
          Length = 691

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|124026388|ref|YP_001015503.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A]
 gi|123961456|gb|ABM76239.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A]
          Length = 635

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  ++ Q   D+   + PK +LLVGP G GKT +S+ +A  A
Sbjct: 181 EDVAGVDEAKNELTEIV-DFLKKPQRYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEA 238

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 239 EVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 269


>gi|83644094|ref|YP_432529.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
 gi|83632137|gb|ABC28104.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396]
          Length = 643

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 157 DVAGVDEAKEEVKEIVDFLRDPSKFQRLGGRI-----PRGVLMVGNPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 212 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 247


>gi|150017388|ref|YP_001309642.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149903853|gb|ABR34686.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 578

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 1   MKLTFNFSPREIVSELD-RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNI 56
           M++  +FS ++  + L+   + G ++AK ++      L+N  + Q+  A +     PK +
Sbjct: 133 MEMQ-DFS-KDKKAALNFDAVAGNEEAKESLMDVVDFLKNPEKYQKYGARM-----PKGV 185

Query: 57  LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           +L G  G GKT +++ +A  AG PF  +  + F ++ YVG    ++ R+L   A     +
Sbjct: 186 ILYGDPGTGKTLLAKAVAGEAGVPFYALSGSDFVQV-YVGVGAARV-RNLFKKA-----K 238

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           S+   V     I+A  +        ++     +     L +     +E  I V   ++ +
Sbjct: 239 SQGKAVIFIDEIDAIGKARGNGKNGSSNDEKDQTLNALLTEMSGFGQEEGIVVIAATNRL 298

Query: 177 SNFD 180
              D
Sbjct: 299 DMLD 302


>gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
 gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
          Length = 663

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 162 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAAAGEA 219

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 253


>gi|304405792|ref|ZP_07387450.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
 gi|304345035|gb|EFM10871.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus
           YK9]
          Length = 671

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 150 KSRARLYNEEKKRVTFEDVAGADEEKQELVEVVEFLKDPRKFAAVGARI-----PKGVLL 204

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 205 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 257


>gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
 gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
          Length = 894

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +A + +   +R+  +      +L  ++ P+ +LL GP G GKT ++R +A  A
Sbjct: 168 EDVAGADEAVQEL-DEIRDFLQHPARYEELGAKI-PRGVLLYGPPGTGKTLLARAVAGEA 225

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 GVPFYTISGSDFVEM-FVGVGASRV-RDLFNQA 256


>gi|170040585|ref|XP_001848075.1| paraplegin [Culex quinquefasciatus]
 gi|167864185|gb|EDS27568.1| paraplegin [Culex quinquefasciatus]
          Length = 806

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 309 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTMLAKATAGEA 366

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +         
Sbjct: 367 NVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKSFGGH 425

Query: 127 --SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               N   ++L  + G          A +N  ++  K L      D++I +   D     
Sbjct: 426 SEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALLRPGRFDRQIFVPAPDIKGRA 485

Query: 177 SNFDIPGGASVGILNLSELFSKV 199
           S F +        L+ ++L  K+
Sbjct: 486 SIFKVHLNPLKTSLDKNDLSRKM 508


>gi|159465357|ref|XP_001690889.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158279575|gb|EDP05335.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 727

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT +++ +A
Sbjct: 260 DDVAGCDGAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLAKAVA 314

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 315 GEAGTPFFSCAASEFVEV-FVGVGASRV-RDLFEKA 348


>gi|121591823|ref|ZP_01679007.1| cell division protease FtsH [Vibrio cholerae 2740-80]
 gi|121546312|gb|EAX56593.1| cell division protease FtsH [Vibrio cholerae 2740-80]
          Length = 392

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 68  DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 122

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 123 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 155


>gi|119477410|ref|ZP_01617601.1| cell division protein FtsH [marine gamma proteobacterium HTCC2143]
 gi|119449336|gb|EAW30575.1| cell division protein FtsH [marine gamma proteobacterium HTCC2143]
          Length = 638

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGVDEAKEDVHELVEFLRDPGKFQRLGGRI-----PRGVLMVGQPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEIDAV 258


>gi|16077137|ref|NP_387950.1| cell-division protein and general stress protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221307879|ref|ZP_03589726.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312201|ref|ZP_03594006.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317134|ref|ZP_03598428.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321397|ref|ZP_03602691.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313739|ref|YP_004206026.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
 gi|585159|sp|P37476|FTSH_BACSU RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|467458|dbj|BAA05304.1| cell division protein [Bacillus subtilis]
 gi|2632336|emb|CAB11845.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482441|dbj|BAI83516.1| cell division protease FtsH [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020013|gb|ADV94999.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus subtilis BSn5]
          Length = 637

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT +++  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLAKACAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|224824151|ref|ZP_03697259.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
 gi|224603570|gb|EEG09745.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
          Length = 652

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)

Query: 18  RYIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G  +AK  +   +       R+RR           +PK +L+VG  G GKT +++ 
Sbjct: 184 DDVAGIDEAKDELMQVVEFLKAPERYRRLGG-------KIPKGVLIVGAPGTGKTLLAKA 236

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132
           +A  AG PF  +  ++F E+ +VG    ++ RDL + A             E+A      
Sbjct: 237 VAGEAGVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA------------EEKAPCIIFI 282

Query: 133 RILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
             LDAL       G +      +   + L   +  D    + +   ++     D P    
Sbjct: 283 DELDALGKARGISGISGNDEREQTLNQLLVQMDGFDTNKGVIILAATNRPEILD-PALLR 341

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCY 216
            G  +      +   +GR+K +++  ++  
Sbjct: 342 PGRFDRHVAIDRPDLTGREKILQVHCKEVR 371


>gi|255947742|ref|XP_002564638.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591655|emb|CAP97894.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 798

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 333 DVHGCDEAKDELQELVEFLLNPDRFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 387

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----------RRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ RDL   A                  +R+E   
Sbjct: 388 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFAQARGKAPAIIFIDELDAIGGKRNERDA 445

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G +        A +N  ++  K L      D+ + +++ D    +
Sbjct: 446 AYVKQTLNQLLTELDGFSQTTGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGRM 505

Query: 177 SNF 179
              
Sbjct: 506 DIL 508


>gi|220907269|ref|YP_002482580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
 gi|219863880|gb|ACL44219.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425]
          Length = 612

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G + AK  ++     L+N  R   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 157 NDVAGIEQAKLELSEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|149198608|ref|ZP_01875652.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155]
 gi|149138323|gb|EDM26732.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155]
          Length = 754

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 21/144 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + + GQ  A  AV  A++         + L DE  P  + L  GPTGVGKT ++++L+
Sbjct: 462 LKKLVYGQDKAVEAVVKAVKT------ARSGLGDEDKPYGSFLFTGPTGVGKTELAKQLS 515

Query: 75  RLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123
            L G  F++ ++++++E            GYVG     ++ D V      +     DE+ 
Sbjct: 516 SLLGVKFLRFDMSEYSEKHSISRLIGSPPGYVGFEQGGLLTDAVTKNPYSL--VLLDEI- 572

Query: 124 EQASINAEERILDALVGKTATSNT 147
           E+A       +L  +     T N 
Sbjct: 573 EKAHQEIYNILLQVMDHGKLTDNN 596


>gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1]
 gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1]
          Length = 610

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+N     +L A +     PK ILLVGP G GKT ++R +A 
Sbjct: 157 DVAGVDEAKAELEEVVEFLKNPAEYGKLGAHI-----PKGILLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 EAGVTFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|302755941|ref|XP_002961394.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
 gi|302798232|ref|XP_002980876.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300151415|gb|EFJ18061.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii]
 gi|300170053|gb|EFJ36654.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii]
          Length = 661

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 148/427 (34%), Gaps = 67/427 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LRN  +  +L   L     PK +LLVGP G GKT +++ +A
Sbjct: 218 QDVKGCDEAKAELEEIVQYLRNPAKFTRLGGKL-----PKGVLLVGPPGTGKTLLAKAIA 272

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF     ++F E+ +VG    ++ R L   A            +++A        
Sbjct: 273 GEAGVPFFYRAGSEFEEM-FVGVGARRV-RTLFQTA------------KKKAPCIVFIDE 318

Query: 135 LDALVGKTATS--NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
           +DA+         +T++   + L + +  +   +  +   ++++     P     G  + 
Sbjct: 319 IDAVGSSRKNWEGHTKKTLNQLLVEMDGFEA-NEGIIVLAATNLPESLDPALTRPGRFDR 377

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI----VF 248
             +       GR+  + + ++     LM D   + I   T       +     +      
Sbjct: 378 HVVVPNPDVRGRQDILELYLKD--KPLMDDVDVKCIARGTPGFSGADLANLVNMAAVKAA 435

Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308
           LD  DKI +            G +R  + L E S   T Y       + F  +GA  + +
Sbjct: 436 LDGTDKISSDQLEFAKDKILMGTERKSMVLSEESKKLTAYHESGHAVVAFNTAGANPIHK 495

Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI-------ILD 361
            A ++P       +   L   +++    I            + + + +          L 
Sbjct: 496 -ATIMPRGSS-LGMVAQLPEKDETSISKI------------QMMARLDVCMGGRVAEELV 541

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI---SF-----SASDLQEKTVV 413
           F  D I + A       S +    A     V E  + D     +          + +   
Sbjct: 542 FGPDQITSGAR------SDLEQATALARHMVSECGMSDTVGPMYVDSRAQHPSHEIQK-S 594

Query: 414 IDAEYVR 420
           IDAE VR
Sbjct: 595 IDAEVVR 601


>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073500|gb|ADJ62899.1| ATP-dependent Zn metallopeptidase (cell division FtsH)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P  +L+VGP G GKT ++R +A 
Sbjct: 158 DVAGCDEAKEEVQELVEFLRDPTKFQKLGGRI-----PHGVLMVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKH 248


>gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 610

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+N     +L A +     PK ILLVGP G GKT ++R +A 
Sbjct: 157 DVAGVDEAKAELEEVVEFLKNPAEYGKLGAHI-----PKGILLVGPPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 EAGVTFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|58040123|ref|YP_192087.1| cell division protein FtsH [Gluconobacter oxydans 621H]
 gi|58002537|gb|AAW61431.1| Cell division protein FtsH [Gluconobacter oxydans 621H]
          Length = 634

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LR+  +  +L   +     PK  LLVGP G GKT ++R +A
Sbjct: 156 EDVAGIDEAKSELQEIVEFLRDPQKFTRLGGKI-----PKGALLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKSAPCIIFIDEIDAV 260


>gi|302799806|ref|XP_002981661.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
 gi|300150493|gb|EFJ17143.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
          Length = 737

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 246 NDVAGCDEAKEEVMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 300

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 301 GEASVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 334


>gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 613

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|270293656|ref|ZP_06199858.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275123|gb|EFA20983.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 746

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   +   I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT ++
Sbjct: 450 LHERISSRIYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVA 503

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + LA   G    + +++++TE            GYVG     ++ D +    N 
Sbjct: 504 KVLAAELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNC 557


>gi|27380264|ref|NP_771793.1| ClpA-like protein [Bradyrhizobium japonicum USDA 110]
 gi|27353428|dbj|BAC50418.1| ClpA-like protein [Bradyrhizobium japonicum USDA 110]
          Length = 802

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  ++A +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRTVFGQDKAIESLAASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 636

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   +   + A +     PK +LL+GP G GKT +++ +A 
Sbjct: 190 DVAGIDEAKEELEEVVTFLKEPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 245 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 293


>gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 648

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 35/261 (13%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  + Q+L   +     PK +L++GP G GKT ++R +A 
Sbjct: 166 DVAGIDEAKDELEEIIAFLKDPKKFQKLGGRI-----PKGVLMMGPPGTGKTLLARAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---- 126
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V R +     
Sbjct: 221 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKHAPCIIFIDEIDAVGRHRGAGLG 278

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G  +          N  +V    +      D+ I +   D  
Sbjct: 279 GGHDEREQTLNQLLVEMDGFESNEGVIIVAATNRPDVLDPAILRPGRFDRRIVVNRPDVR 338

Query: 174 SDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDM 230
                  +      +G     E+ ++         I   V +      R + D   ++D 
Sbjct: 339 GREGILRVHTKKVPLGPDVDMEILARGTPGFVGADIENLVNEAALLAARQDKDVVSMVDF 398

Query: 231 DTVHRDSIQMVENYGIVFLDE 251
           +      +   E   +V  DE
Sbjct: 399 EMAKDKVLMGAERRSMVISDE 419


>gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana]
 gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana]
 gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana]
          Length = 622

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   +I RDL + A
Sbjct: 365 RLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAARI-RDLFNAA 422


>gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
          Length = 622

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   +I RDL + A
Sbjct: 365 RLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAARI-RDLFNAA 422


>gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 654

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVEEAKQDLQEVVTFLKTPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|258543659|ref|YP_003189092.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634737|dbj|BAI00713.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637793|dbj|BAI03762.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640847|dbj|BAI06809.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643902|dbj|BAI09857.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646957|dbj|BAI12905.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650010|dbj|BAI15951.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653000|dbj|BAI18934.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656054|dbj|BAI21981.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 645

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKGELQEIVDFLKDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKAAPCIIFIDEIDAV 260


>gi|110803260|ref|YP_697892.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683761|gb|ABG87131.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 713

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|50892959|emb|CAH10348.1| Ftsh-like protease [Pisum sativum]
          Length = 786

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   LRN  +  +L   L     PK 
Sbjct: 321 YTPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLRNPAKFTRLGGKL-----PKG 375

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 376 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 434

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 435 IIFIDEIDAV 444


>gi|119356264|ref|YP_910908.1| FtsH peptidase [Chlorobium phaeobacteroides DSM 266]
 gi|119353613|gb|ABL64484.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 652

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
            +F  S  ++VSE D     + + G  +A   +      L N  R +++   +     PK
Sbjct: 190 FSFGKSRAKMVSEFDVKTSFKDVAGVDEAIEELQETVEFLTNPERFEKIGGKI-----PK 244

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 245 GVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGASRV-RDLFEQAKKN 301


>gi|328870037|gb|EGG18412.1| peptidase M41 [Dictyostelium fasciculatum]
          Length = 853

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +N  + ++L A +     PK  +LVGP G GKT +++  A
Sbjct: 370 KDVAGMDEAKEEIMEFVSFLKNADKYKKLGAKI-----PKGAILVGPPGTGKTLLAKATA 424

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 425 GESGVPFFTISGSDFIEM-FVGVGPSRV-RDLFKEA 458


>gi|302768875|ref|XP_002967857.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
 gi|300164595|gb|EFJ31204.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
          Length = 828

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V   +    N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 337 NDVAGCDEAKEEVMEFVHFLKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATA 391

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 392 GEASVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 425


>gi|288957829|ref|YP_003448170.1| cell division protease [Azospirillum sp. B510]
 gi|288910137|dbj|BAI71626.1| cell division protease [Azospirillum sp. B510]
          Length = 645

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L++  + Q+L   +     PK  LLVGP G GKT  +R +A
Sbjct: 156 DDVAGIDEAKQELTEIVEFLKDPQKFQRLGGKI-----PKGCLLVGPPGTGKTLTARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|149912460|ref|ZP_01900994.1| ATPase AAA-2 [Roseobacter sp. AzwK-3b]
 gi|149812866|gb|EDM72692.1| ATPase AAA-2 [Roseobacter sp. AzwK-3b]
          Length = 872

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R +IGQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEDNLHRRVIGQDQAVKAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + +A          +++++++F E            GYVG +      E + R    V +
Sbjct: 615 KAVAEFLFDDDQAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQVVL 674

Query: 112 NIVRESRRDEV 122
               E    EV
Sbjct: 675 FDEVEKAHPEV 685


>gi|145495643|ref|XP_001433814.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400934|emb|CAK66417.1| unnamed protein product [Paramecium tetraurelia]
          Length = 699

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   +     L+   + +++ A L     P+  LL GP G GKT +++  A
Sbjct: 340 NDVAGLDEAKLEIKEFVDFLKKPRKFKEMGAKL-----PRGALLAGPPGTGKTMVAKACA 394

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  + F E+ +VG    ++ RDL   A
Sbjct: 395 GEAGVPFFFVSGSDFVEM-FVGVGASRV-RDLFKQA 428


>gi|54307809|ref|YP_128829.1| putative cell division protein FtsH [Photobacterium profundum SS9]
 gi|81400133|sp|Q6LUJ8|FTSH_PHOPR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46912232|emb|CAG19027.1| putative cell division protein FtsH [Photobacterium profundum SS9]
          Length = 696

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G GKT +++ +A 
Sbjct: 180 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAG 234

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 235 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 283


>gi|189345643|ref|YP_001942172.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
 gi|189339790|gb|ACD89193.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
          Length = 694

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 12  IVSELDRY-------IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +   LD +       + G  + K  V      L++  +  +L   L     PK +LLVGP
Sbjct: 184 LYENLDEHTRITFKDVAGLDEVKAEVMEVVDFLKDPKKYTKLGGKL-----PKGVLLVGP 238

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT +++ +A  A  PF  +  + F E+ +VG     V  + R   + A  I+    
Sbjct: 239 PGTGKTLLAKAVAGEAEVPFFSISGSDFVEM-FVGVGAARVRDLFRQAKEKAPCIIFIDE 297

Query: 119 RDEV 122
            D V
Sbjct: 298 IDAV 301


>gi|196231474|ref|ZP_03130332.1| ATP-dependent metalloprotease FtsH [Chthoniobacter flavus Ellin428]
 gi|196224327|gb|EDY18839.1| ATP-dependent metalloprotease FtsH [Chthoniobacter flavus Ellin428]
          Length = 610

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  V      LR+  + Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 128 KDVAGVEEAKEEVTEIVEFLRDPKKFQKLGGRI-----PKGVLMVGSPGTGKTLLARAIA 182

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 183 GEADVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKSAPCLIFIDEIDAV 232


>gi|168217957|ref|ZP_02643582.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|182380014|gb|EDT77493.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 717

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|149919978|ref|ZP_01908453.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1]
 gi|149819251|gb|EDM78685.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1]
          Length = 767

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L + + GQ +A      A+    +R +     R +      L  GPTGVGKT ++R+L
Sbjct: 448 EGLRQVLFGQDEAVATATKAI----KRAR-AGLARPDKPIGCFLFTGPTGVGKTELARQL 502

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ARL G PF++ +++++ E            GYVG +    + D V    + 
Sbjct: 503 ARLLGMPFLRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGQLTDSVAKNPHS 553


>gi|21673136|ref|NP_661201.1| cell division protein FtsH [Chlorobium tepidum TLS]
 gi|21646212|gb|AAM71543.1| cell division protein FtsH [Chlorobium tepidum TLS]
          Length = 659

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPK 54
            +F  S  +++SE D       + G  +A   +   +    N  + Q++   +     PK
Sbjct: 189 FSFGKSRAKLISEFDVKVTFNDVAGVDEAIEELKETVEFLMNPEKFQKIGGKI-----PK 243

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 244 GVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFETAKKN 300


>gi|110637033|ref|YP_677240.1| cell division protein, ATP-dependent metalloprotease [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279714|gb|ABG57900.1| membrane protease FtsH catalytic subunit [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 692

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR   +  +L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 205 DVAGLDEAKEEVKEIVDFLRFPTKFTKLGGKI-----PKGALLVGPPGTGKTLLAKAVAG 259

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 260 EAGVPFFSLSGSDFVEM-FVGVGAARV-RDLFKQA 292


>gi|332973011|gb|EGK10950.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychrobacter
           sp. 1501(2011)]
          Length = 856

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L+R + GQ +A + ++ A++              +    + +  GPTGVGKT +S+
Sbjct: 533 LERDLNRLVFGQSEAIKTLSDAIK-----LSRAGLKSSDKPIGSFMFAGPTGVGKTEVSK 587

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +LA L G   ++ +++++ E            GYVG +   ++ + ++   + 
Sbjct: 588 QLANLMGIELVRFDMSEYMEAHTASRLIGAPPGYVGFDQGGLLTEKINQHPHC 640


>gi|317479380|ref|ZP_07938514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
 gi|316904454|gb|EFV26274.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides
           sp. 4_1_36]
          Length = 746

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   +   I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT ++
Sbjct: 450 LHERISSRIYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVA 503

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + LA   G    + +++++TE            GYVG     ++ D +    N 
Sbjct: 504 KVLAAELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNC 557


>gi|309359039|emb|CAP33351.2| CBR-SPG-7 protein [Caenorhabditis briggsae AF16]
          Length = 814

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 308 DVAGCEEAKIEIMEFV-NFLKNPQQYKDLGAKI-PKGAILTGPPGTGKTLLAKATAGEAN 365

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PFI V  ++F E+ +VG     V  +       +  I+     D V
Sbjct: 366 VPFITVSGSEFLEM-FVGVGPARVRDMFSMARKNSPCILFIDEIDAV 411


>gi|160888887|ref|ZP_02069890.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
 gi|156861786|gb|EDO55217.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492]
          Length = 746

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   +   I GQ++A R V  A+      Q   A L DE  P  ++L VGPTGVGKT ++
Sbjct: 450 LHERISSRIYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVA 503

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + LA   G    + +++++TE            GYVG     ++ D +    N 
Sbjct: 504 KVLAAELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNC 557


>gi|300113260|ref|YP_003759835.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299539197|gb|ADJ27514.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 639

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR   R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEEVQELVEFLREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKH 245


>gi|212637911|ref|YP_002314431.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
 gi|212559391|gb|ACJ32446.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1]
          Length = 627

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +   +   ++  +  +L A +     PK +LLVGP G GKT ++R +A
Sbjct: 162 KDVAGADEEKQELVEIVEFLKDPRKFVELGARI-----PKGVLLVGPPGTGKTLLARAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 217 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 253


>gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980]
 gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 774

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+N  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 298 DVHGCDEAKDELQELVDFLKNPEKFSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 352

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L   A
Sbjct: 353 EAGVPFFFMSGSEFDEI-YVGVGAKRV-RELFTAA 385


>gi|56460083|ref|YP_155364.1| membrane ATP-dependent Zn protease [Idiomarina loihiensis L2TR]
 gi|56179093|gb|AAV81815.1| Membrane ATP-dependent Zn proteases [Idiomarina loihiensis L2TR]
          Length = 648

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  V+     L++  + Q+L   +     PK +L+VGP G GKT +++ ++
Sbjct: 158 KDVAGCDEAKEEVSELVDYLKDPSKFQRLGGKI-----PKGVLMVGPPGTGKTLLAKAIS 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 213 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 246


>gi|148243292|ref|YP_001228449.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147851602|emb|CAK29096.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 618

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 163 EDVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 218 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 254


>gi|11467496|ref|NP_043642.1| ORF 644 [Odontella sinensis]
 gi|1706925|sp|P49825|FTSH_ODOSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1185191|emb|CAA91674.1| ORF 644 [Odontella sinensis]
          Length = 644

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 102/299 (34%), Gaps = 54/299 (18%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + I G  +AK     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 186 KDIAGIDEAKTEFEEIVSFLKEPDKYTIVGAKI-----PKGILLVGPPGTGKTLLAKAIA 240

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
             A  PF  V  ++F E+  G     V  + +   + A  IV     D V RE+      
Sbjct: 241 NEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGG 300

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G             N  ++    L      D+++ + + D   
Sbjct: 301 GNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLG 360

Query: 175 DISNF-----DIPGGASVGILNLSE--------LFSKVMGSGRKKKIRMSVQKCYPELMR 221
            +        + P G  V ++ L+           + ++        R          + 
Sbjct: 361 RVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVN 420

Query: 222 DESDRLID------MDTVHRDSI-------QMVENYGIVFLDEFDKIVARDSGNGIGVS 267
           + +DR+I       M+      +         +    +   DE +KI     G   G++
Sbjct: 421 EAADRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLT 479


>gi|260771179|ref|ZP_05880106.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
 gi|260613776|gb|EEX38968.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
          Length = 652

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 257


>gi|290894272|ref|ZP_06557239.1| ftsH protein [Listeria monocytogenes FSL J2-071]
 gi|290556156|gb|EFD89703.1| ftsH protein [Listeria monocytogenes FSL J2-071]
          Length = 690

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|240047434|ref|YP_002960822.1| Cell division protein [Mycoplasma conjunctivae HRC/581]
 gi|310946905|sp|C5J6A7|FTSH_MYCCR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|239985006|emb|CAT04999.1| Cell division protein [Mycoplasma conjunctivae]
          Length = 754

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 38/220 (17%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +A  +   +N  +     A +     PK ILL GP G GKT +++  A 
Sbjct: 238 DVAGNAEVKEEIAEFVDYLKNPKKYAAAGAKI-----PKGILLGGPPGTGKTLLAKATAG 292

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  + F E+ YVG   +++ R+L   A              +A   A    +
Sbjct: 293 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKEA--------------RAESPAI-IFI 335

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D L     +  +        R+  ++   ++++           +  G   +G  N +++
Sbjct: 336 DELDAIGRSRGSGIGGGHDEREQTLNQLLVEMD--------GMVENSGILLIGATNRTDV 387

Query: 196 FSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLIDM 230
               +    +    + V     ++    L      + I  
Sbjct: 388 LDPALLRPGRFDRSIIVGLPDIKEREEILKLHAKGKRISQ 427


>gi|237756504|ref|ZP_04585035.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691333|gb|EEP60410.1| cell division protease FtsH [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 632

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 98/258 (37%), Gaps = 29/258 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K   + +   L++  R Q+L         PK ILL G  GVGKT +++ +A
Sbjct: 153 DDVAGMDEVKEEVKELIEYLKDPSRYQKLGG-----RAPKGILLYGDPGVGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PFI +  + F E+ +VG    ++ RDL +     A  ++     D V  +A    
Sbjct: 208 GEANVPFISISGSDFVEM-FVGVGAARV-RDLFETAKKHAPCLIFIDEIDAV-GRARTGV 264

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G     + RE    +L          +  +   +++  +   P     G  
Sbjct: 265 ---------GFGGGHDEREQTLNQLLVELDGFDSNEGIIVIAATNRPDILDPALLRPGRF 315

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
           +      K    GR + +++ V+K    L  D     +D+ T+ + +           ++
Sbjct: 316 DRQISVPKPDVRGRYEILKVHVKKKNIPLDED-----VDLMTIAKGTPGFSGADLANLIN 370

Query: 251 EFDKIVARDSGNGIGVSR 268
           E   + AR +   +G+  
Sbjct: 371 EAALLAARRNKEKVGMQE 388


>gi|182678641|ref|YP_001832787.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634524|gb|ACB95298.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 829

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L+R + GQ  A  A+  A++              E    + L  GPTGVGKT ++R
Sbjct: 466 LTETLERVVYGQNSAIEALTAAIK-----LARAGLRDGEKPIGSYLFSGPTGVGKTEVAR 520

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 521 QLATSLGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHC 573


>gi|56808854|ref|ZP_00366565.1| COG0465: ATP-dependent Zn proteases [Streptococcus pyogenes M49
           591]
          Length = 364

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 170 DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 225 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 263


>gi|298242533|ref|ZP_06966340.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297555587|gb|EFH89451.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 616

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 14  SELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           S L + + G ++AK   + +   L++  R  Q+ A       PK +LLVG  G GKT IS
Sbjct: 180 SILFKDVAGVEEAKMELQEIVEFLKHPARFTQMGA-----RTPKGVLLVGAPGTGKTLIS 234

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESRRDEVREQASIN 129
           R +A  AG  F  V  ++F E+ +VG    ++ RDL   A  +       DE+       
Sbjct: 235 RAVAGEAGVSFYSVSGSEFVEM-FVGVGAARV-RDLFKEAKDHSPCIIFIDEIDAVGRQR 292

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                     G T      +   + L + +  DKE +I V   ++     D P     G 
Sbjct: 293 TN-------SGMTGNDEREQTLNQLLVEMDGFDKETNIVVIAATNRPDVLD-PALLRPGR 344

Query: 190 LNLSELFSKVMGSGR 204
            +   +  K    GR
Sbjct: 345 FDRRVMLDKPDIRGR 359


>gi|294140598|ref|YP_003556576.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           violacea DSS12]
 gi|293327067|dbj|BAJ01798.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           violacea DSS12]
          Length = 752

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A  +++ A+     R        +     + L  GPTGVGKT +
Sbjct: 450 KNLERNLKMVVFGQDKAIESLSAAI-----RLSRSGLSGEGKPVGSFLFAGPTGVGKTEV 504

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+  G   I+ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 TSQLAKCLGLNLIRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 559


>gi|261250305|ref|ZP_05942881.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
 gi|260939421|gb|EEX95407.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
          Length = 657

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 146 MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 258

Query: 121 EV 122
            V
Sbjct: 259 AV 260


>gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 617

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA]
 gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei]
          Length = 849

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 118/298 (39%), Gaps = 38/298 (12%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  ++K  +      ++NR R Q++ A +     PK +LLVGP G GKT ++R +A  
Sbjct: 154 IAGIDESKLELLEVVDFIKNRERYQEMGARM-----PKGVLLVGPPGSGKTMLARAVATE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S +A   
Sbjct: 209 ANVPYIYTSGPEFIEI-YVGQGAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSSSASN- 266

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
                          +   + L + +     + I V   ++ I   D       G  +  
Sbjct: 267 -------GAGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDS-ALLRPGRFDRI 318

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL---------IDMDTVHRDSIQMVEN- 243
                   +GRKK + + ++K    L  ++ +R+          D++ +  ++I    N 
Sbjct: 319 VYVPLPDVNGRKKILEIYIKKIKSNLNANDIERMSRLTPGFSGADLENLVNETILATRNK 378

Query: 244 YGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDHI 296
             +V ++E     DK+        +  S    QR +    E G ++   +    TD I
Sbjct: 379 KSLVTINELFEARDKVSMGPERKSLKQSEH--QRRITAYHEAGHAIVAYFLHPKTDPI 434


>gi|260816555|ref|XP_002603036.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
 gi|229288351|gb|EEN59048.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae]
          Length = 572

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G Q+AK  +   +    +  + P    +    +PK +LLVGP G GKT ++R +A 
Sbjct: 328 DDVKGCQEAKEELEEVV----KFLRDPDRFTNLGGKLPKGVLLVGPPGTGKTLLARAVAG 383

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF     ++F E+ +VG    ++ R+L   A   
Sbjct: 384 EADVPFFYASGSEFDEM-FVGVGASRV-RNLFTAAKKN 419


>gi|121710646|ref|XP_001272939.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus clavatus NRRL 1]
 gi|119401089|gb|EAW11513.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus clavatus NRRL 1]
          Length = 879

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 99/285 (34%), Gaps = 37/285 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   ++  + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 395 DVAGMDEAKVEIMEFVSFLKHPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 449

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            +G PF  V  ++F E+ +VG    ++ RDL   A            R+ A        +
Sbjct: 450 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA------------RKNAPCIIFIDEI 495

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+      S  ++ F     + E +  +I  E+   ++      + G     +L+ + +
Sbjct: 496 DAI----GKSRAKQSFGGGNDERESTLNQILTEMDGFNTSEQVVVLAGTNRPDVLDKALM 551

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---DMDTVHRDSIQMVENYGIVFLDEF 252
                                 ++ R    +++   DMD +           G    D  
Sbjct: 552 RPGRFDRHIAIDRPTM--DGRKQIFRVHLKKIVTKEDMDYLT--GRLAALTPGFAGAD-- 605

Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
             I    +   +  +RE      +   E +      G      +L
Sbjct: 606 --IANCVNEAALVAARENADSVTMKHFEQAIERVVGGLEKKSLVL 648


>gi|91788713|ref|YP_549665.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
 gi|91697938|gb|ABE44767.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666]
          Length = 640

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKGIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|302337451|ref|YP_003802657.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293]
 gi|301634636|gb|ADK80063.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293]
          Length = 864

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L++ ++GQ++A RAV+ A+R      +    L DE  P  + + +GPTGVGKT +
Sbjct: 564 QLESTLEKRVVGQKEAIRAVSDAIR------RNKTGLSDEARPLGSFIFIGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA           +++++++ E   V R
Sbjct: 618 ARTLADFLFDDERALTRIDMSEYMEKHAVSR 648


>gi|254701911|ref|ZP_05163739.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella suis
           bv. 5 str. 513]
 gi|261752475|ref|ZP_05996184.1| ATP-dependent Clp protease [Brucella suis bv. 5 str. 513]
 gi|261742228|gb|EEY30154.1| ATP-dependent Clp protease [Brucella suis bv. 5 str. 513]
          Length = 651

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|217076556|ref|YP_002334272.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
 gi|217036409|gb|ACJ74931.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
          Length = 618

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L+N  +  ++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 160 KDVAGVDEAVEELQEIVEFLKNPTKFNKIGARM-----PKGVLLVGPPGTGKTLLARAVA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +     + A  IV     D V
Sbjct: 215 GEANVPFFHISGSDFVEL-FVGVGAARVRDLFNKAKESAPCIVFIDEIDAV 264


>gi|152990623|ref|YP_001356345.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
 gi|151422484|dbj|BAF69988.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor
           sp. SB155-2]
          Length = 862

 Score = 64.2 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 108/294 (36%), Gaps = 43/294 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            EL +Y++GQ  A +AVA A+    +R              + + +GPTGVGKT  ++ L
Sbjct: 567 DELKKYVVGQDAAIKAVARAI----KR-NKAGLSDTNRPIGSFMFLGPTGVGKTETAKTL 621

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR------- 123
           AR         I+++++++ E   V R V      +       + E+ R +         
Sbjct: 622 ARFLFDTEKSLIRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDE 681

Query: 124 -EQASINAEERILDALVGKTATSNT--REVFRKKL---------------RDGEISDKEI 165
            E+A  +    +L  L     T N      FR  +               +D E  +K +
Sbjct: 682 IEKAHPDVFNILLQVLDDGRLTDNKGVTVDFRNTIIIMTSNIASDKIMEFKDPEDREKAV 741

Query: 166 DIEVAD-------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
             E+            D      P G    +  +  +F+++    +++ I++ + +   +
Sbjct: 742 KDELKRYFKPEFLNRLDDIVIFNPLGEQEIVKIVDIMFARIQEKLKERDIKIELTESAKK 801

Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
           L+       +      + ++  +    +  L   DK+     G+ +    EG Q
Sbjct: 802 LVAKAGFDPVYGARPLKRALYEIVEDTLAELILEDKV---KEGDSVKFDAEGDQ 852


>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
 gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
          Length = 595

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 95/269 (35%), Gaps = 39/269 (14%)

Query: 20  IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+AK ++A     ++   +  +  A +     P+ ++L GP G GKT ++R LA  
Sbjct: 157 VAGNQEAKESLAELVDFIKEPEKYAKYGARI-----PRGVILYGPPGTGKTLLARALAGE 211

Query: 77  AGAPFIKVEVTKFTEIGYVGRNV---EQIIRDLVDVAINIVRESRRDEVREQA------- 126
           AG PF  V  + F ++ YVG        + +   +    ++     D + ++        
Sbjct: 212 AGVPFYAVSGSDFVQM-YVGVGAARIRSLFKKAREQGKCVIFIDEIDALGKKRNGGRMDG 270

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                      +L  + G             N  +V  + L      D++I++ + D + 
Sbjct: 271 GSDERDQTLNALLAEMSGFNENQGIVIMAATNRLDVLDEALLRPGRFDRQIEVGLPDVNG 330

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRK---KKIRMSVQKCYPELMRDESD--RLID 229
                 +  G       +     KV          ++   + +      + +++   + D
Sbjct: 331 RHKILKLHSGNKPIAPEV--DLWKVAQQTVYFSGAQLESMLNEAAIIAAKRDAESIEMSD 388

Query: 230 MDTVHRDSIQMVENYGIVFLDEFD-KIVA 257
           +D      I   E      + E D KI A
Sbjct: 389 IDKAFYTVIAGAEKTDRSAISEIDRKITA 417


>gi|307822306|ref|ZP_07652538.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter
           tundripaludum SV96]
 gi|307736872|gb|EFO07717.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter
           tundripaludum SV96]
          Length = 757

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   + GQ +A  A+A A++              +    + L  GPTGVGKT ++R
Sbjct: 453 LEKNLKMLVFGQDEAISALASAIK-----LSRAGLRDTQKTIGSFLFAGPTGVGKTEVTR 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA++ G   I+ +++++ E            GYVG +   ++ + V    +
Sbjct: 508 QLAKVLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEQVTKHPH 559


>gi|303327022|ref|ZP_07357464.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863010|gb|EFL85942.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           sp. 3_1_syn3]
          Length = 771

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 21/148 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   + GQ +A      A+       +  A L  E  P    L  GPTGVGKT ++
Sbjct: 486 LERDLKHLVFGQGEAIELTVRAI------LRARAGLGQEQRPAGAFLFYGPTGVGKTEVA 539

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           R LA+L G  F++ +++++ E            GYVG +   ++ + V  A   V     
Sbjct: 540 RSLAKLMGVEFLRYDMSEYMEKHSVSRLIGSPPGYVGFDQGGLLTEAVRKAPYSV--VLL 597

Query: 120 DEVREQASINAEERILDALVGKTATSNT 147
           DEV E+A  +    +L  +   T T NT
Sbjct: 598 DEV-EKAHPDIFNVLLQVMDYATLTDNT 624


>gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 613

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|109897892|ref|YP_661147.1| ATP-dependent metalloprotease FtsH [Pseudoalteromonas atlantica
           T6c]
 gi|109700173|gb|ABG40093.1| membrane protease FtsH catalytic subunit [Pseudoalteromonas
           atlantica T6c]
          Length = 656

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 159 DVAGCDEAKEDVVELVDFLRDPSKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 262


>gi|108803150|ref|YP_643087.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108764393|gb|ABG03275.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 837

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A RAVA A+R      +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 530 LEAVLHERVIGQDEAVRAVAEAIR------RARAGIKDPRRPVGSFIFLGPTGVGKTELA 583

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          ++++++++ E   V R V
Sbjct: 584 RTLAEYLFGEEEAMVRIDMSEYQEKHTVSRLV 615



 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +  + L+K D   I+      ++ +  + ++++ I ++ T ++ + LA+ 
Sbjct: 726 PEFLNRVDEIIVFRPLSKEDVMQIV----DIMLRRLNKHLESQRISVEVTPEAREFLAEE 781

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
             +       + +R ++  +E  L             TVV+D +
Sbjct: 782 GYDPKFGARPL-SRAIRRHIENPLSSSIIEGEFSPGDTVVVDRD 824


>gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
 gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus
           polymyxa SC2]
          Length = 606

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 8   SPREIVSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           SP+       + I G ++AK     +   L+N      + A L     PK ++  GP G 
Sbjct: 162 SPKGSKRTTFKQIAGHEEAKEDMQYLVDFLKNPLNYTIMGAKL-----PKGVIFYGPPGT 216

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT  ++ LA  AG PF  V  + F E  YVG    ++ RD+ ++A
Sbjct: 217 GKTLFAKALAGEAGVPFFSVSGSDFVEK-YVGTGASRV-RDMFNLA 260


>gi|261755133|ref|ZP_05998842.1| ATP-dependent Clp protease [Brucella suis bv. 3 str. 686]
 gi|261744886|gb|EEY32812.1| ATP-dependent Clp protease [Brucella suis bv. 3 str. 686]
          Length = 365

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 5   LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 58

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 59  KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 112


>gi|218262673|ref|ZP_03477031.1| hypothetical protein PRABACTJOHN_02710 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223249|gb|EEC95899.1| hypothetical protein PRABACTJOHN_02710 [Parabacteroides johnsonii
           DSM 18315]
          Length = 680

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   + +  +  +   +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 195 KDVAGLAEAKQEVEEIV-SFLKSPEKYTELGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  + F E+ +VG     V  + R   + A  IV     D V R +        
Sbjct: 253 DVPFFSLSGSDFVEM-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAVGRARGKNVNMNS 311

Query: 127 ---SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                N   ++L  + G  + S        N  ++  K L      D++I +E+ D +  
Sbjct: 312 NDERENTLNQLLTEMDGFGSNSGVIILAATNRADILDKALLRAGRFDRQIHVELPDLNER 371

Query: 176 ISNFDIP 182
              F + 
Sbjct: 372 KEIFGVH 378


>gi|159472685|ref|XP_001694475.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276699|gb|EDP02470.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 234

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 19  YIIGQQDAKRAV--AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            + G   AK+ +        +  RQ+  +      MP  +LL GP G GKT +++ +A  
Sbjct: 9   DVAGVDAAKQELLEVCGCVLKCVRQRNKSA----RMPSGVLLCGPPGTGKTLLAKAVAGE 64

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQ 125
           AG PF  V  ++F E+ +VGR   +I     +    A  +V     D V  +
Sbjct: 65  AGVPFFAVSASEFVEM-FVGRGAARIRELFAEARKSAPCVVFIDELDGVGSK 115


>gi|320335488|ref|YP_004172199.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756777|gb|ADV68534.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A 
Sbjct: 170 DVAGCDEAKTDLTEVVDFLRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG P+  +  + F E+ +VG    ++ RDL + A   
Sbjct: 225 EAGVPYFSISGSDFVEM-FVGVGAARV-RDLFEQAKKQ 260


>gi|238486048|ref|XP_002374262.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
 gi|220699141|gb|EED55480.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus
           NRRL3357]
          Length = 624

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 154 DVHGCDEAKEELQELVEFLLNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L   A +               ++R+E   
Sbjct: 209 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFTQARSKAPAIIFIDELDAIGAKRNERDA 266

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+ + +++ D    +
Sbjct: 267 AYVKQTLNQLLTELDGFSQTSGVIIIAATNYPQLLDKALTRPGRFDRRVVVDLPDVRGRM 326

Query: 177 SNF 179
              
Sbjct: 327 DIL 329


>gi|212710002|ref|ZP_03318130.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
 gi|212687411|gb|EEB46939.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
          Length = 655

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V      LR   R Q+L   +     PK +L+VGP G
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVGEIVDFLREPARFQKLGGKI-----PKGVLMVGPPG 195

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 254

Query: 121 EV 122
            V
Sbjct: 255 AV 256


>gi|89900796|ref|YP_523267.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118]
 gi|89345533|gb|ABD69736.1| membrane protease FtsH catalytic subunit [Rhodoferax ferrireducens
           T118]
          Length = 639

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPAKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKGIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|162287285|ref|NP_001104667.1| AFG3-like protein 2 [Danio rerio]
 gi|161612073|gb|AAI55656.1| Si:ch211-12e1.4 protein [Danio rerio]
 gi|169146790|emb|CAQ14927.1| novel protein similar to vertebrate AFG3 ATPase family gene 3-like
           2 (yeast) (AFG3L2) [Danio rerio]
          Length = 800

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 8   SPREIVSELD---RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           + + +  E+D   + + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G 
Sbjct: 290 TAKVLRDEIDVKFKDVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAILTGPPGT 347

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++  A  A  PFI V  ++F E+ +VG     V  +       A  I+     D 
Sbjct: 348 GKTLLAKATAGEANVPFITVNGSEFLEM-FVGVGPARVRDLFVLARKNAPCILFIDEIDA 406

Query: 122 VREQ 125
           V  +
Sbjct: 407 VGRK 410


>gi|16799329|ref|NP_469597.1| hypothetical protein lin0252 [Listeria innocua Clip11262]
 gi|16412681|emb|CAC95485.1| ftsH [Listeria innocua Clip11262]
          Length = 690

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  ADL   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFADLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|86150829|ref|ZP_01069045.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85841999|gb|EAQ59245.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 538

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 260 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLP 319

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 320 DFKDRLKILEIYMKDKNNNVNLNKI 344


>gi|74317255|ref|YP_314995.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056750|gb|AAZ97190.1| ATP-dependent Clp protease, ATP-binding subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 750

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S + +  +L   + GQ  A  A++ A++              +    N L  GPTGVGKT
Sbjct: 447 SLKTLDRDLKAVVYGQDAAIDALSTAIK-----MSRSGLGNPQKPIGNFLFSGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LA + G   I+ +++++ E            GYVG +   ++ + V     
Sbjct: 502 EVARQLAYVLGVELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKHPY 557


>gi|18309580|ref|NP_561514.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168214787|ref|ZP_02640412.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|18144257|dbj|BAB80304.1| cell division protein [Clostridium perfringens str. 13]
 gi|170713759|gb|EDT25941.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
          Length = 717

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|182420046|ref|ZP_02951280.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237669537|ref|ZP_04529517.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376083|gb|EDT73670.1| putative Cell division protease FtsH [Clostridium butyricum 5521]
 gi|237654981|gb|EEP52541.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 601

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K     +   L+   +  Q+ A +     PK ILLVGP G GKT +++ +A 
Sbjct: 160 DVAGADEEKAELEEIVDFLKLPAKYIQMGARI-----PKGILLVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  +    +  ++     D V
Sbjct: 215 EAGVPFFSISGSDFVEM-FVGVGASRVRSMFEEAKKNSPCLIFIDEIDAV 263


>gi|157415262|ref|YP_001482518.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386226|gb|ABV52541.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747904|gb|ADN91174.1| cell division protein (ftsH) [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932133|gb|EFV11076.1| ATPase family associated with various cellular activities (AAA)
           family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 538

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 260 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLP 319

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 320 DFKDRLKILEIYMKDKNNNVNLNKI 344


>gi|75906798|ref|YP_321094.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75700523|gb|ABA20199.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 613

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 613

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|319957420|ref|YP_004168683.1| membrane protease ftsh catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
 gi|319419824|gb|ADV46934.1| membrane protease FtsH catalytic subunit [Nitratifractor salsuginis
           DSM 16511]
          Length = 696

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L+   R   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 183 DDVAGVDEAKEEVKEIVDFLKYPERYIALGAKI-----PKGVLLVGPPGTGKTLLAKAVA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 238 GEASVPFFSVSGSSFIEM-FVGVGASRV-RDLFEQA 271


>gi|149192459|ref|ZP_01870652.1| cell division protein FtsH [Vibrio shilonii AK1]
 gi|148833710|gb|EDL50754.1| cell division protein FtsH [Vibrio shilonii AK1]
          Length = 601

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 85  MSEEQIKTTF-ADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 138

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 139 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 197

Query: 121 EV 122
            V
Sbjct: 198 AV 199


>gi|311070716|ref|YP_003975639.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
 gi|310871233|gb|ADP34708.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942]
          Length = 639

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|255717022|ref|XP_002554792.1| KLTH0F13904p [Lachancea thermotolerans]
 gi|238936175|emb|CAR24355.1| KLTH0F13904p [Lachancea thermotolerans]
          Length = 739

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   +    +  +  A      +P+  +L GP G GKT +++  A  A
Sbjct: 268 KDVAGCNEAKAEIMEFVHFLQKPDKYKALGA--KIPRGAILSGPPGTGKTLLAKATAGEA 325

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF+ V  ++F E+ +VG    ++ RDL + A  +
Sbjct: 326 GVPFLSVSGSEFVEM-FVGVGASRV-RDLFENARKM 359


>gi|172063361|ref|YP_001811012.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|171995878|gb|ACB66796.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 655

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|167647098|ref|YP_001684761.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           sp. K31]
 gi|167349528|gb|ABZ72263.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           sp. K31]
          Length = 773

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           S RE+  +L   + GQ +A   ++ A++         A LRD   P  + L  GPTGVGK
Sbjct: 455 SLRELERDLKGAVFGQDEALAQLSSAMK------LARAGLRDPDKPIGSYLFSGPTGVGK 508

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           T  +++LA   G   I+ +++++ E            GYVG +    + D VD   +
Sbjct: 509 TEAAKQLASTLGIEMIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGQLTDAVDQHPH 565


>gi|121593879|ref|YP_985775.1| FtsH-2 peptidase [Acidovorax sp. JS42]
 gi|120605959|gb|ABM41699.1| membrane protease FtsH catalytic subunit [Acidovorax sp. JS42]
          Length = 635

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +A+  +      L+N  R++R           +PK +L+VG  G GKT +++ 
Sbjct: 174 KDVAGIDEAREELMEVVEFLKNPDRYKRLGG-------KIPKGVLIVGAPGTGKTLLAKA 226

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF+ +  ++F E+ +VG    ++ RDL + A
Sbjct: 227 VAGEAGVPFLSLSGSEFVEM-FVGVGAARV-RDLFEQA 262


>gi|167520684|ref|XP_001744681.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777012|gb|EDQ90630.1| predicted protein [Monosiga brevicollis MX1]
          Length = 447

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                  + G  +AK  +      LR+  R  +L   L     PK +LL+GP G GKT +
Sbjct: 3   RQYTFEDVQGADEAKEELMDVVEFLRHPDRFTRLGGKL-----PKGVLLMGPPGTGKTLL 57

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +R +A  AG PF     ++F E+ +VG   R V ++       A  IV     D V  +
Sbjct: 58  ARAVAGEAGVPFFYCSGSEFDEM-FVGVGARRVRELFAVAKRKAPCIVFMDEIDAVGSR 115


>gi|108804640|ref|YP_644577.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
 gi|123069043|sp|Q1AV13|FTSH_RUBXD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|108765883|gb|ABG04765.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM
           9941]
          Length = 651

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A + +      L N  + Q+L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 190 DVAGADEAVQELTEIKEFLENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 277


>gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 669

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+   +     + G  +A   +      L+   + Q + A +     PK +LL
Sbjct: 157 KLLTKDTPKTTFA----DVAGADEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLL 207

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 208 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|283956403|ref|ZP_06373883.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792123|gb|EFC30912.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 536

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 144 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 198

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 199 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 257

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 258 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDSALLRSGRFDRRIFLSLP 317

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 318 DFKDRLKILEIYMKDKNNNVNLNKI 342


>gi|260814842|ref|XP_002602122.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae]
 gi|229287429|gb|EEN58134.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae]
          Length = 724

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G Q+AK  +   + N  R      +L  +L PK +LLVGP G GKT ++R +A  A
Sbjct: 268 EDVKGCQEAKEELEEVV-NFLRDPDRFTNLGGKL-PKGVLLVGPPGTGKTLLARAVAGEA 325

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             PF     ++F E+ +VG    ++ R+L   A   
Sbjct: 326 DVPFFYASGSEFDEM-FVGVGASRV-RNLFTAAKKN 359


>gi|120602576|ref|YP_966976.1| ATP-dependent Clp protease ATP-binding protein ClpA [Desulfovibrio
           vulgaris DP4]
 gi|120562805|gb|ABM28549.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris DP4]
          Length = 776

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + ++L + + GQ+ A     +A+  R   +      R++    + L  GPTGVGKT +
Sbjct: 447 KTLENDLGKAVFGQEAA-----VAVVARSILRARAGFGREDRPTGSFLFYGPTGVGKTEL 501

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +R LA+  G  F++ +++++ E            GYVG +       L +          
Sbjct: 502 ARSLAKRLGVAFLRYDMSEYMEKHAVSRFIGAPPGYVGYDQ---GGQLTEAVRRTPYAVV 558

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
             +  E+A  +    +L  +   T T NT
Sbjct: 559 LLDEMEKAHPDIFNVLLQVMDYATLTDNT 587


>gi|46580013|ref|YP_010821.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449429|gb|AAS96080.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233988|gb|ADP86842.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           vulgaris RCH1]
          Length = 776

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + ++L + + GQ+ A     +A+  R   +      R++    + L  GPTGVGKT +
Sbjct: 447 KTLENDLGKAVFGQEAA-----VAVVARSILRARAGFGREDRPTGSFLFYGPTGVGKTEL 501

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +R LA+  G  F++ +++++ E            GYVG +       L +          
Sbjct: 502 ARSLAKRLGVAFLRYDMSEYMEKHAVSRFIGAPPGYVGYDQ---GGQLTEAVRRTPYAVV 558

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
             +  E+A  +    +L  +   T T NT
Sbjct: 559 LLDEMEKAHPDIFNVLLQVMDYATLTDNT 587


>gi|73667492|ref|YP_303508.1| FtsH peptidase [Ehrlichia canis str. Jake]
 gi|72394633|gb|AAZ68910.1| membrane protease FtsH catalytic subunit [Ehrlichia canis str.
           Jake]
          Length = 611

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++R R Q+L   +     PK  LL+G  G GKT ++R +A
Sbjct: 156 NDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|115358624|ref|YP_775762.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD]
 gi|115283912|gb|ABI89428.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria
           AMMD]
          Length = 655

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|68171365|ref|ZP_00544760.1| Peptidase M41, FtsH [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657587|ref|YP_507882.1| ATP-dependent metalloprotease FtsH [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999215|gb|EAM85870.1| Peptidase M41, FtsH [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599044|gb|ABD44513.1| ATP-dependent metalloprotease FtsH [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 610

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++R R Q+L   +     PK  LL+G  G GKT ++R +A
Sbjct: 156 NDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKI-----PKGCLLIGSPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|333029842|ref|ZP_08457903.1| ATP-dependent metalloprotease FtsH [Bacteroides coprosuis DSM
           18011]
 gi|332740439|gb|EGJ70921.1| ATP-dependent metalloprotease FtsH [Bacteroides coprosuis DSM
           18011]
          Length = 689

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 27/188 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + N  +  Q    L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 189 KDVAGLSEAKQEIEEIV-NFLKDPQKYTRLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA------ 126
             PF  +  + F E+ +VG    ++ RDL +     A  IV     D V R +       
Sbjct: 247 HVPFFSMAGSDFVEM-FVGVGASRV-RDLFEQAKKKAPCIVFIDEIDAVGRARGKNPSMG 304

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G  + S        N  +V  K L      D++I +++ D + 
Sbjct: 305 GNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIYVDLPDLND 364

Query: 175 DISNFDIP 182
            I  F++ 
Sbjct: 365 RIEIFNVH 372


>gi|283954556|ref|ZP_06372075.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793960|gb|EFC32710.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           414]
          Length = 538

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++    +     PK +L++GP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPRKYKEFGIKM-----PKGVLMIGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 260 RGEMSNVER 268


>gi|237784915|ref|YP_002905620.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237757827|gb|ACR17077.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 857

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R ++GQ +A +AV+ A+     R+       +     + L +GPTGVGKT +++
Sbjct: 566 MEKVLGRRVVGQDEAVKAVSDAV-----RRARAGVADENRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 621 ALADFLFDDEKAMVRIDMSEYGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRR 673


>gi|182625752|ref|ZP_02953520.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177909014|gb|EDT71496.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 717

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|126304978|ref|XP_001377432.1| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Monodelphis domestica]
          Length = 798

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 308 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 362

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + R+  + A  IV     D V ++
Sbjct: 363 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQNRAPCIVYIDEIDAVGKK 415


>gi|94496140|ref|ZP_01302718.1| AAA ATPase, central region [Sphingomonas sp. SKA58]
 gi|94424319|gb|EAT09342.1| AAA ATPase, central region [Sphingomonas sp. SKA58]
          Length = 859

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + +IGQ DA +AV+ A+R      +  A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 566 ELGKRVIGQADAVKAVSTAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELTKAL 619

Query: 74  ARLA---GAPFIKVEVTKFTEIGYVGR 97
           A       +  +++++++F E   V R
Sbjct: 620 ASFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|288941932|ref|YP_003444172.1| ATP-dependent Clp protease ATP-binding subunit clpA [Allochromatium
           vinosum DSM 180]
 gi|288897304|gb|ADC63140.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Allochromatium vinosum DSM 180]
          Length = 755

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S + +  +L   + GQ  A  A+  A+     R        +E    + L  GPTGVGKT
Sbjct: 452 SLKNLDRDLKMVVYGQDAAIDALTSAI-----RMNRSGLGHEEKPIGSFLFTGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LAR+ G   ++ +++++ E            GYVG +   ++ + ++   +
Sbjct: 507 EVTRQLARILGMELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEQINKHPH 562


>gi|254520159|ref|ZP_05132215.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226913908|gb|EEH99109.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 587

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 34/244 (13%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
            Y+ G ++AK ++      L+N  + +   A +     PK ++L G  G GKT +++ +A
Sbjct: 149 DYVAGNEEAKESLMDIVDFLKNPQKYKDYGARM-----PKGVILYGSPGTGKTLLAKAVA 203

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEVREQ----- 125
             A  PF  +  + F ++ YVG    +I R+L   A    +        D + ++     
Sbjct: 204 GEAKVPFYALSGSDFVQV-YVGVGAARI-RNLFKKAKAQGKAVIFIDEIDAIGKKRGGSS 261

Query: 126 ASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
           AS   +ER      +L  + G             N  +     L      D+ I++ + D
Sbjct: 262 ASSGNDERDQTLNALLTEMSGFGEQEGIVVIAATNRLDTLDSALLRPGRFDRHIEVSLPD 321

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            S+      +            +  +K        K+   + +    +   E+ RL+  D
Sbjct: 322 ISAREKIISLHLENKPYNNLDLKDIAKKTAYFSGAKLENLINEAA-IIAAKENSRLLTQD 380

Query: 232 TVHR 235
            +++
Sbjct: 381 HINK 384


>gi|165976010|ref|YP_001651603.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876111|gb|ABY69159.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 640

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 245


>gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414]
 gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414]
          Length = 612

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 158 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|332827689|gb|EGK00428.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 677

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+N  R  ++   +     PK  LLVGP G GKT +++ +A
Sbjct: 199 KDVAGLSEAKEEIEEIVEFLKNPSRYTEIGGKI-----PKGALLVGPPGTGKTLLAKAVA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 254 GEANVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 287


>gi|307245456|ref|ZP_07527544.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254410|ref|ZP_07536248.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258869|ref|ZP_07540601.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853797|gb|EFM86014.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862709|gb|EFM94665.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867220|gb|EFM99076.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 631

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 146 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 200

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 201 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 236


>gi|302143674|emb|CBI22535.3| unnamed protein product [Vitis vinifera]
          Length = 1311

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   L+N  +  +L   L     PK 
Sbjct: 846 YAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKL-----PKG 900

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 901 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 959

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 960 IIFIDEIDAV 969


>gi|251772970|gb|EES53529.1| Peptidase M41, FtsH [Leptospirillum ferrodiazotrophum]
          Length = 577

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 132 DVAGVDEAKEEVFEIVEFLKDPSKFQRLGGHI-----PKGVLVVGPPGTGKTLLAKAIAG 186

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            A  PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 187 EADVPFFHISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 235


>gi|197103226|ref|YP_002128604.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1]
 gi|196480502|gb|ACG80029.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1]
          Length = 610

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  Q    L    MPK +LLVGP G GKT +++ +A  A 
Sbjct: 154 DVAGVDEAKDELREII-DFLKDPQEYGRLGG-RMPKGVLLVGPPGTGKTLLAKAVAGEAK 211

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 VPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 241


>gi|110800032|ref|YP_695032.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|123344991|sp|Q0TTK8|FTSH_CLOP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|110674679|gb|ABG83666.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 717

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|289548616|ref|YP_003473604.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484]
 gi|289182233|gb|ADC89477.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484]
          Length = 620

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K  V   +   + R  L         PK +LL G  GVGKT ++R +A  A
Sbjct: 155 EDVAGMDEVKEEVKEIIE--YLRDPLRFQRLGGRPPKGVLLYGEPGVGKTLLARAIAGEA 212

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             PFI V  + F E+ +VG    ++ RDL + A   
Sbjct: 213 HVPFISVSGSDFVEM-FVGVGAARV-RDLFETAKRH 246


>gi|209965091|ref|YP_002298006.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
 gi|209958557|gb|ACI99193.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
          Length = 646

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L++  + Q+L   +     PK +LLVGP G GKT  +R +A
Sbjct: 156 DDVAGIDEAKQELEEVVEFLKDPQKFQRLGGKI-----PKGVLLVGPPGTGKTLTARAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCIIFIDEIDAV 260


>gi|116834081|gb|ABK29907.1| HslU [Buchnera aphidicola]
          Length = 44

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           E+++EDISF+ASD +  T+ I++ YV  H+    S  D+  FIL
Sbjct: 1   EKLMEDISFNASDNKGNTIEINSNYVGEHLDQLVSNEDLSRFIL 44


>gi|307251349|ref|ZP_07533265.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856590|gb|EFM88730.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 631

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 146 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 200

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 201 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 236


>gi|295395571|ref|ZP_06805765.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971590|gb|EFG47471.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 727

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ++L GP G GKT ++R +A  AG PF  +  + F E+ YVG    ++ RDL + A 
Sbjct: 223 IPKGVMLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASRV-RDLFEQAK 280

Query: 112 NI 113
           N 
Sbjct: 281 NN 282


>gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa]
 gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 215 DDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 269

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 270 GEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFNKA 303


>gi|218710451|ref|YP_002418072.1| cell division protein FtsH [Vibrio splendidus LGP32]
 gi|218323470|emb|CAV19647.1| cell division protein FtsH [Vibrio splendidus LGP32]
          Length = 659

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I   +   + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G
Sbjct: 147 MSEEQIK-TMFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPG 200

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 201 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 259

Query: 121 EV 122
            V
Sbjct: 260 AV 261


>gi|190149910|ref|YP_001968435.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252226|ref|ZP_07338394.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|189915041|gb|ACE61293.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649009|gb|EFL79197.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
          Length = 643

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 248


>gi|119476168|ref|ZP_01616520.1| ATP-binding protease component ClpA [marine gamma proteobacterium
           HTCC2143]
 gi|119450795|gb|EAW32029.1| ATP-binding protease component ClpA [marine gamma proteobacterium
           HTCC2143]
          Length = 759

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S +++   L   + GQ  A   +A A++              E    + LL GPTGVGKT
Sbjct: 453 SLKKLEDNLKMVVFGQDKAISTLATAIK-----MARAGLKAVEKPIGSFLLAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            ++ +LA++ G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 EVTNQLAKILGLELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTESVTKHPHS 564


>gi|46143708|ref|ZP_00134553.2| COG0465: ATP-dependent Zn proteases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208077|ref|YP_001053302.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096869|gb|ABN73697.1| cell division protease FtsH-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 640

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 245


>gi|307579092|gb|ADN63061.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 643

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 164 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 219 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 254


>gi|296447237|ref|ZP_06889167.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296255296|gb|EFH02393.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 637

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    +       L   + PK ILLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGVDEAKEELQEIVA-FLKDPGTYGRLGARI-PKGILLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 224 VPFYSITGSEFVEM-FVGVGAARV-RDLFAQA 253


>gi|254294755|ref|YP_003060778.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814]
 gi|254043286|gb|ACT60081.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814]
          Length = 640

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   + Q+L   +     PK  LLVGP G GKT I+R +A
Sbjct: 158 DDVAGVDEAKEELQEIVEFLQEPGKFQRLGGKI-----PKGALLVGPPGTGKTLIARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|114328467|ref|YP_745624.1| clpB protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316641|gb|ABI62701.1| clpB protein [Granulibacter bethesdensis CGDNIH1]
          Length = 865

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+DA RAVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEDELRQRVVGQEDALRAVANAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          +++++++F E            GYVG +   ++ + V      V  
Sbjct: 619 KALAEFLFDDDRAMVRIDMSEFMEKHAVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQV-- 676

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 677 ILFDEV-EKAHEDVFNILLQVL 697


>gi|26990713|ref|NP_746138.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida KT2440]
 gi|24985706|gb|AAN69602.1|AE016593_10 ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           putida KT2440]
 gi|313498103|gb|ADR59469.1| ClpA [Pseudomonas putida BIRD-1]
          Length = 756

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDQAIDSLATAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|332982904|ref|YP_004464345.1| ATPase AAA-2 domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332700582|gb|AEE97523.1| ATPase AAA-2 domain protein [Mahella australiensis 50-1 BON]
          Length = 855

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A +AV+ A+R      +    L+D   P  + + +GPTGVGKT ++
Sbjct: 559 MEGELHKRVVGQDEAVKAVSEAVR------RARTGLKDPNRPIGSFIFLGPTGVGKTELA 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 613 RALAEFLFGDEDAMIRIDMSEYMEKHTVSR 642


>gi|313905377|ref|ZP_07838743.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313469847|gb|EFR65183.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 617

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK   + V   L    +   + A L     PK  LLVGP G GKT +++ +A 
Sbjct: 175 DVAGEEEAKDSLKEVVDFLHTPEKYTTIGAKL-----PKGALLVGPPGTGKTLLAKAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 230 EAHVPFFSLSGSEFVEM-FVGVGASRV-RDLFEEAKKQ 265


>gi|303251538|ref|ZP_07337712.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649536|gb|EFL79718.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 643

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 248


>gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 617

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|150024698|ref|YP_001295524.1| cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
 gi|149771239|emb|CAL42708.1| Cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
          Length = 643

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I +   + + G + AK  +      L+N  +   L   +     PK  LLVGP G GKT
Sbjct: 184 DIKTTF-KDVAGLEGAKEEIQEIVEFLKNPTKYTNLGGKI-----PKGALLVGPPGTGKT 237

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 238 LLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 278


>gi|146283637|ref|YP_001173790.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
 gi|145571842|gb|ABP80948.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
          Length = 593

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 111 DVAGCDEAKEEVHELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLLAKAIAG 165

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 166 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 201


>gi|124359471|gb|ABN05909.1| Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M,
           neutral zinc metallopeptidases, zinc-binding site;
           Peptidase M41, FtsH extracellular [Medicago truncatula]
          Length = 569

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 209 EDIAGVDEAKQDFQEIVEFLKTPEKFSSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 263

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 264 GEAKVPFFSLSGSEFIEM-FVGVGASRV-RDLFNKA 297


>gi|148547060|ref|YP_001267162.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida F1]
 gi|148511118|gb|ABQ77978.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           putida F1]
          Length = 756

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDQAIDSLATAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|325288402|ref|YP_004264583.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963803|gb|ADY54582.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 645

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                + + G  + K  +      L++  +  ++ A +     PK +LL GP G GKT +
Sbjct: 151 KKTTFKDVAGADEVKEELEEIVDFLKSPRKFNEIGAKI-----PKGVLLFGPPGTGKTLL 205

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ ++  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 206 AKAVSGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 244


>gi|308050590|ref|YP_003914156.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
 gi|307632780|gb|ADN77082.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
          Length = 650

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVAELVDYLRDPSKFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 242


>gi|307256620|ref|ZP_07538400.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864868|gb|EFM96771.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 631

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 146 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 200

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 201 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 236


>gi|223041503|ref|ZP_03611706.1| cell division protease FtsH-like protein [Actinobacillus minor 202]
 gi|223017761|gb|EEF16168.1| cell division protease FtsH-like protein [Actinobacillus minor 202]
          Length = 642

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 159 DVAGCDEAKEEVGEVVDFLRDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 214 EAKVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|329910111|ref|ZP_08275237.1| Cell division protein FtsH [Oxalobacteraceae bacterium IMCC9480]
 gi|327546264|gb|EGF31295.1| Cell division protein FtsH [Oxalobacteraceae bacterium IMCC9480]
          Length = 630

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 158 DVAGCDEAKEEVQELVDFLRDPTKFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKQ 248


>gi|307247569|ref|ZP_07529613.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252149|ref|ZP_07534048.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307261053|ref|ZP_07542734.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263234|ref|ZP_07544854.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855934|gb|EFM88093.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306860449|gb|EFM92463.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306869250|gb|EFN01046.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871451|gb|EFN03175.1| Membrane protease FtsH catalytic subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 631

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 146 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 200

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 201 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 236


>gi|241952773|ref|XP_002419108.1| mitochondrial respiratory chain complexes assembly protein,
           putative [Candida dubliniensis CD36]
 gi|223642448|emb|CAX42693.1| mitochondrial respiratory chain complexes assembly protein,
           putative [Candida dubliniensis CD36]
          Length = 792

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 38/233 (16%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 286 KDVAGCDESKEEIMEFV----KFLQDPHKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 341

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF+ V  ++F E+ +VG     V  + +   ++A  I+     D + +E+      
Sbjct: 342 EAGVPFLSVSGSEFVEM-FVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMG 400

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G          A +N  ++  K L      D+ I I+V     
Sbjct: 401 GNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFDRHISIDVP---- 456

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D+ G   +  ++L++L  K +     K+  +   K Y +L  +E ++L
Sbjct: 457 -----DVEGRKQIFKVHLNKLKLKSVQDIDAKQKDVDFSK-YQQLKNEEIEKL 503


>gi|119471555|ref|ZP_01613969.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Alteromonadales bacterium TW-7]
 gi|119445498|gb|EAW26784.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Alteromonadales bacterium TW-7]
          Length = 650

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVTELVDFLRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  + F E+ +VG     V  +       A  I+     D V  +
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRK 264


>gi|307243201|ref|ZP_07525374.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306493462|gb|EFM65442.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 680

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E V+ +   + G  + K   + V   L+N  +   L A +     PK IL+VGP G GKT
Sbjct: 157 EKVNVVFDDVAGLSEEKDELQEVVDFLKNPKKYMDLGARI-----PKGILMVGPPGTGKT 211

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +S+ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 YLSKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 252


>gi|84387292|ref|ZP_00990313.1| cell division protein FtsH [Vibrio splendidus 12B01]
 gi|84377939|gb|EAP94801.1| cell division protein FtsH [Vibrio splendidus 12B01]
          Length = 658

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I   +   + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G
Sbjct: 144 MSEEQIK-TMFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPG 197

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 198 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEID 256

Query: 121 EV 122
            V
Sbjct: 257 AV 258


>gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
 gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
          Length = 668

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E        + G  + K+ +      L++  +  +L A +     PK +LLVGP G GKT
Sbjct: 157 EKKKITFDDVAGADEEKQELVEVVEFLKDPRKFARLGARI-----PKGVLLVGPPGTGKT 211

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R  A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 212 LLARAAAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 255


>gi|326794632|ref|YP_004312452.1| ATP-dependent Clp protease ATP-binding subunit clpA [Marinomonas
           mediterranea MMB-1]
 gi|326545396|gb|ADZ90616.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           mediterranea MMB-1]
          Length = 756

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   + GQ +A   ++ A++             D+    + L+ GPTGVGKT ++R
Sbjct: 452 LERNLKMVVFGQDEAIETLSDAIK-----LSRAGLKADQKPIGSFLMAGPTGVGKTEVTR 506

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+  G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 507 QLAKQMGLELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKNPHS 559


>gi|239996919|ref|ZP_04717443.1| ATP-dependent metalloprotease FtsH [Alteromonas macleodii ATCC
           27126]
          Length = 503

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 12  DVAGCDEAKEDVSELVDFLRDPSKFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAG 66

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 67  EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 115


>gi|307182187|gb|EFN69522.1| AFG3-like protein 2 [Camponotus floridanus]
          Length = 822

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 313 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 370

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 371 DVPFITVSGSEFLEM-FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRK 420


>gi|168206716|ref|ZP_02632721.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211698|ref|ZP_02637323.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170661854|gb|EDT14537.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710347|gb|EDT22529.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
          Length = 717

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTRKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|15805610|ref|NP_294306.1| cell division protein FtsH [Deinococcus radiodurans R1]
 gi|6458277|gb|AAF10160.1|AE001916_6 cell division protein FtsH [Deinococcus radiodurans R1]
          Length = 618

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   LR   +  QL A +     P+ +LLVGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKQDLQEVVEFLRQPEKYHQLGARI-----PRGVLLVGPPGSGKTLLAKAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  P+  +  + F E+ +VG    ++ RDL + A
Sbjct: 210 EAKVPYFSISGSDFVEM-FVGVGAARV-RDLFEQA 242


>gi|296416325|ref|XP_002837831.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633714|emb|CAZ82022.1| unnamed protein product [Tuber melanosporum]
          Length = 854

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  A
Sbjct: 416 KDVAGMDEAKVEIMEFV-SFLKQPERFQKLGAKI-PRGAILSGPPGTGKTLLAKATAGEA 473

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             PF  V  ++F E+ +VG     V  +       A  I+     D + + +A  N 
Sbjct: 474 QVPFFSVSGSEFVEM-FVGVGPSRVRDLFAKARKNAPCIIFVDEIDAIGKSRARANI 529


>gi|291515858|emb|CBK65068.1| ATP-dependent metalloprotease FtsH [Alistipes shahii WAL 8301]
          Length = 693

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 107/302 (35%), Gaps = 42/302 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + +  ++     +L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLEEAKVEIMEIV-DFLKKADKYKELGAKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINA---- 130
             PF+ +  + F E+ +VG     V  +       A  IV     D +      NA    
Sbjct: 255 NVPFLSISGSDFVEM-FVGVGASRVRDLFEQAKQKAPCIVFIDEIDAIGRARGKNAGFSG 313

Query: 131 -EER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G          A +N  ++  K L      D++I++ + D    
Sbjct: 314 NDERENTLNQLLTEMDGFQTNTGVIVLAATNRADILDKALMRAGRFDRQIEVGLPDVKER 373

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
              F++          L   F      G       +V      +    + + I  +    
Sbjct: 374 EEIFNVHLRPLKLDPQLDRSFLARQTPGFSGADIANVCNEAALIAARHNKKFISKED--- 430

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
                       FL   D+IV         ++ E  ++ ++   E    +  +   N   
Sbjct: 431 ------------FLAAIDRIVGGLERKNKIITDE--EKRVIAFHEAGHATVSWILENASP 476

Query: 296 IL 297
           ++
Sbjct: 477 LI 478


>gi|237748682|ref|ZP_04579162.1| cell division protease [Oxalobacter formigenes OXCC13]
 gi|229380044|gb|EEO30135.1| cell division protease [Oxalobacter formigenes OXCC13]
          Length = 627

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 158 DVAGCDEAKEEVIEVVDFLRDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFETAKKH 248


>gi|146282646|ref|YP_001172799.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri A1501]
 gi|145570851|gb|ABP79957.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri A1501]
 gi|327480904|gb|AEA84214.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           stutzeri DSM 4166]
          Length = 756

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ DA  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDDAIDSLATAIK-----LSRAGLKAPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LAR  G   I+ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLARALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 637

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLQEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++            +L   +      ++           L+ + +   I     
Sbjct: 355 GRLSILEVHA-------RNKKLDGDLTLESIARRTPGFTGADLANLLNEAA---ILTARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +DSI + E       D  D+IVA   G+
Sbjct: 405 RKDSISISEID-----DSVDRIVAGMEGS 428


>gi|115376679|ref|ZP_01463907.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366296|gb|EAU65303.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 738

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL   I GQ +A + +   ++              E    + L  GPTGVGKT +
Sbjct: 433 QNLEKELRAVIFGQDEAIQNLTSTIK-----LARSGLRSPEKPIGSFLFSGPTGVGKTEL 487

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LA + G  F++ ++++++E            GYVG +   ++ D +     
Sbjct: 488 AKQLAAVLGVEFLRFDMSEYSEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKHPY 541


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR    V  + ++  +
Sbjct: 329 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAARVRDLFKEAKE 387

Query: 109 VAINIVRESRRDEV 122
            A +I+     D V
Sbjct: 388 AAPSIIFIDELDAV 401


>gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 613

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGIDQAKLELNEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|121998182|ref|YP_001002969.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Halorhodospira halophila SL1]
 gi|121589587|gb|ABM62167.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Halorhodospira
           halophila SL1]
          Length = 756

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 34/261 (13%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+  N        EL   I GQ +A  ++A  ++              +      L  G
Sbjct: 450 MKVLENL-----EGELKGLIFGQDEAIESLASTIK-----MSRAGLGTPDRPVGTFLFAG 499

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDV 109
           PTGVGKT ++R+LA + G   I+ +++++ E            GYVG +   +   L + 
Sbjct: 500 PTGVGKTEVTRQLAEVTGVQMIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGL---LTEE 556

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
            I         +  E+A  +    +L  +   T T N         R+ +  +  + +  
Sbjct: 557 VIKHPHSVLLLDEIEKAHPDVFNLLLQVMDHGTLTDNNG-------READFRNVVLVMTT 609

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              + ++S   I         +  E   +      + +I   VQ  +  L +D   R++D
Sbjct: 610 NAGAEEMSKRSIGFTNESDTQDSMEAIRRTFSPEFRNRIDAVVQ--FQPLGQDTVQRVVD 667

Query: 230 MDTVHRDSIQMVENYGIVFLD 250
              +   S+Q+ E    + +D
Sbjct: 668 K-FIRELSVQLAEKRVTLVVD 687


>gi|322514379|ref|ZP_08067427.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC
           25976]
 gi|322119730|gb|EFX91774.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC
           25976]
          Length = 643

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVGEVVDFLKDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 EAGVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 248


>gi|297181897|gb|ADI18074.1| ATP-dependent zn proteases [uncultured Acidobacteriales bacterium
           HF0200_23L05]
          Length = 639

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  +      LR   + Q+L   +     PK +LL+GP G GKT ++R +A
Sbjct: 153 KDVAGVDEPKDELQEIIEFLREPQKFQKLGGRI-----PKGVLLMGPPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RDL +     A  IV     D V
Sbjct: 208 GEANVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIVFIDEIDAV 257


>gi|218245163|ref|YP_002370534.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058189|ref|YP_003136077.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165641|gb|ACK64378.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588355|gb|ACU99241.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 616

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  +A     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEQAKLELAEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 249


>gi|297539173|ref|YP_003674942.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
 gi|297258520|gb|ADI30365.1| ATP-dependent metalloprotease FtsH [Methylotenera sp. 301]
          Length = 631

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 156 DVAGCDEAKEEVTEIVEFLRDPTKFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFENAKKN 246


>gi|254704455|ref|ZP_05166283.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella suis
           bv. 3 str. 686]
          Length = 372

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 12  LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 65

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 66  KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 119


>gi|238880604|gb|EEQ44242.1| hypothetical protein CAWG_02507 [Candida albicans WO-1]
          Length = 795

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 38/233 (16%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 287 KDVAGCDESKEEIMEFV----KFLQDPHKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 342

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF+ V  ++F E+ +VG     V  + +   ++A  I+     D + +E+      
Sbjct: 343 EAGVPFLSVSGSEFVEM-FVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMG 401

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G          A +N  ++  K L      D+ I I+V     
Sbjct: 402 GNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFDRHISIDVP---- 457

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D+ G   +  ++L++L  K +     K+  +   K Y +L  +E ++L
Sbjct: 458 -----DVEGRKQIFKVHLNKLKLKSVQDIDAKQKDVDFSK-YQQLKNEEIEKL 504


>gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
 gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
          Length = 642

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L++  +   + A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKI-----PKGVLLAGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 245


>gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa]
 gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    + ++  A      +PK +LLVGP G GKT +++ +A  A
Sbjct: 10  DDVAGVDEAKQDFMEVVEFLKKPERFTAVGA--RIPKGVLLVGPPGTGKTLLAKAIAGEA 67

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 68  GVPFFSISGSEFVEM-FVGVGASRV-RDLFKKA 98


>gi|159478022|ref|XP_001697103.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158274577|gb|EDP00358.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 689

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK+     +    +R +    +   + PK  LLVGP G GKT +++ +A  A
Sbjct: 216 NDVAGVDEAKQDFMEIVE-FLKRPERFTAVGARI-PKGCLLVGPPGTGKTLLAKAIAGEA 273

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  V  ++F E+ +VG     V  + +   + A  +V     D V
Sbjct: 274 GVPFFSVSGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFVDEIDAV 320


>gi|125974738|ref|YP_001038648.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum ATCC
           27405]
 gi|256005251|ref|ZP_05430218.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281418793|ref|ZP_06249812.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|125714963|gb|ABN53455.1| membrane protease FtsH catalytic subunit [Clostridium thermocellum
           ATCC 27405]
 gi|255990802|gb|EEU00917.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           2360]
 gi|281407877|gb|EFB38136.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20]
 gi|316941872|gb|ADU75906.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM
           1313]
          Length = 599

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K   R +   L+N  +  +L A +     PK +LLVGP G GKT +++ ++
Sbjct: 157 NDVAGADEEKEELREIVEFLKNSKKFLELGARI-----PKGVLLVGPPGTGKTLLAKAVS 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 212 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 248


>gi|119504343|ref|ZP_01626423.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2080]
 gi|119459851|gb|EAW40946.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2080]
          Length = 636

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V   +   + R           +P+ IL+VG  G GKT +++ +A  A 
Sbjct: 155 DVAGVDEAKEDVQELVE--YLRDPSRFQKLGGRIPRGILMVGQPGTGKTLLAKAIAGEAK 212

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 VPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 245


>gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 638

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK  +A     L+N  R   L A +     P+ +LLVGP G GKT ++R +A
Sbjct: 169 NDVAGIDQAKLELAEVVDFLKNSERFTALGAKI-----PRGVLLVGPPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 257


>gi|28198007|ref|NP_778321.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71899229|ref|ZP_00681391.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182680633|ref|YP_001828793.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
 gi|28056067|gb|AAO27970.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|71730962|gb|EAO33031.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|182630743|gb|ACB91519.1| ATP-dependent metalloprotease FtsH [Xylella fastidiosa M23]
          Length = 645

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162]
          Length = 630

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK  +      L N  +  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 167 DVAGEEEAKENLQEIVDYLHNPEKYTKVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 222 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 254


>gi|206563423|ref|YP_002234186.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
 gi|198039463|emb|CAR55430.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
          Length = 658

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 673

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +   +   +N  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 210 NDVAGAEEAKTELVEIVEFLKNPERFSKIGARI-----PKGVLLVGPPGTGKTLLAKAVA 264

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG  F  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 265 GEAGVTFFSISASEFVEL-FVGTGAARV-RDLFEQAKKQ 301


>gi|167034609|ref|YP_001669840.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida GB-1]
 gi|166861097|gb|ABY99504.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida GB-1]
          Length = 756

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDQAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|90994519|ref|YP_537009.1| cell division protein [Porphyra yezoensis]
 gi|122225815|sp|Q1XDF9|FTSH_PORYE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|90819083|dbj|BAE92452.1| unnamed protein product [Porphyra yezoensis]
          Length = 628

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK      +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 173 NDVAGVEEAKEEFQEVVT----FLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   D A  IV     D V
Sbjct: 229 EASVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIVFIDEIDAV 277


>gi|332535917|ref|ZP_08411627.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034704|gb|EGI71253.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 650

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVTELVDFLRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  + F E+ +VG     V  +       A  I+     D V  +
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRK 264


>gi|229917401|ref|YP_002886047.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
 gi|229468830|gb|ACQ70602.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b]
          Length = 674

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           K       +E      + + G  + K+ +      L++  +  +L A +     PK +LL
Sbjct: 148 KSKAKLYDQEKRRVTFKDVAGADEEKQELIEVVEFLKDPRKFSKLGARI-----PKGVLL 202

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 203 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 255


>gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 667

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 209 DVAGAEEAKTELVEIVEFLKNPDRFSRIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 263

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG  F  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 264 EAGVTFFSISASEFVEL-FVGTGAARV-RDLFEQAKKQ 299


>gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 687

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +A   +   +       ++RR           +PK +LLVGP G GKT ++R 
Sbjct: 196 QDVAGIDEAVEELQEIVEFLKTPEKYRRLGG-------RIPKGVLLVGPPGTGKTLLARA 248

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 249 TAGEAGVPFFSLSGSEFVEM-FVGVGAARV-RDLFAQA 284


>gi|110803261|ref|YP_699726.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
 gi|110683762|gb|ABG87132.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101]
          Length = 601

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 KDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|317009024|gb|ADU79604.1| cell division protein (ftsH) [Helicobacter pylori India7]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|315178884|gb|ADT85798.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
          11218]
          Length = 46

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 6  NFSPREIVSELDRYIIGQQDAKRAVAIALRNRW 38
            +PREIV EL+R+IIGQ +AKRAVAIALRNRW
Sbjct: 3  EMTPREIVHELNRHIIGQDNAKRAVAIALRNRW 35


>gi|296131785|ref|YP_003639032.1| ATPase AAA-2 domain protein [Thermincola sp. JR]
 gi|296030363|gb|ADG81131.1| ATPase AAA-2 domain protein [Thermincola potens JR]
          Length = 810

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 503 MEEILHQRVIGQDEAVKAVSRAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          ++++++++ E   V R V
Sbjct: 557 RALAEALFGDEDAMVRIDMSEYMEKHAVSRLV 588


>gi|289662670|ref|ZP_06484251.1| cell division protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669633|ref|ZP_06490708.1| cell division protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 646

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
 gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174]
          Length = 633

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+++AK  +      L N  +  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 167 DVAGEEEAKENLQEIVDYLHNPEKYTKVGASM-----PKGVLLVGPPGTGKTMLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  ++F E+ +VG      +RDL   A
Sbjct: 222 ESNVPFFSMSGSEFVEM-FVGMGA-SKVRDLFKQA 254


>gi|116073248|ref|ZP_01470510.1| Peptidase M41, FtsH [Synechococcus sp. RS9916]
 gi|116068553|gb|EAU74305.1| Peptidase M41, FtsH [Synechococcus sp. RS9916]
          Length = 621

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +   ++   + PK +LLVGP G GKT +S+ +A  AG
Sbjct: 172 DVAGVDEAKDELTEIV-DFLKSSERYTEIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAG 229

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 230 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKN 262


>gi|325916041|ref|ZP_08178331.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537717|gb|EGD09423.1| membrane protease FtsH catalytic subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 646

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|311032289|ref|ZP_07710379.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 327

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  ++L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 4   KDVAGADEEKQEL-VEVVEFLKDPRKFSELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 61

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 62  GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 95


>gi|291410705|ref|XP_002721627.1| PREDICTED: fidgetin-like 1 [Oryctolagus cuniculus]
          Length = 677

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       LD         I G + AK  +   +     R  +   LR    PK
Sbjct: 381 NLEPKMIELIMNEILDHGPPVSWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 438

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 439 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 496



 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 490 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 549

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTE 342
               I   A    V R    LPE   R  +  +L S     L++ +   I+  +E
Sbjct: 550 RPQEIDEAARRRLVKRLYIPLPEASARRQIIANLMSREQCCLSEGETERIVQQSE 604


>gi|261837811|gb|ACX97577.1| metalloprotease [Helicobacter pylori 51]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|188575912|ref|YP_001912841.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520364|gb|ACD58309.1| cell division protease FtsH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 646

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|68468373|ref|XP_721746.1| hypothetical protein CaO19.1669 [Candida albicans SC5314]
 gi|68468616|ref|XP_721627.1| hypothetical protein CaO19.9238 [Candida albicans SC5314]
 gi|46443550|gb|EAL02831.1| hypothetical protein CaO19.9238 [Candida albicans SC5314]
 gi|46443678|gb|EAL02958.1| hypothetical protein CaO19.1669 [Candida albicans SC5314]
          Length = 795

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 38/233 (16%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 287 KDVAGCDESKEEIMEFV----KFLQDPHKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 342

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF+ V  ++F E+ +VG     V  + +   ++A  I+     D + +E+      
Sbjct: 343 EAGVPFLSVSGSEFVEM-FVGVGASRVRDLFKTAREMAPAIIFVDEIDAIGKERGNGRMG 401

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G          A +N  ++  K L      D+ I I+V     
Sbjct: 402 GNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFDRHISIDVP---- 457

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                D+ G   +  ++L++L  K +     K+  +   K Y +L  +E ++L
Sbjct: 458 -----DVEGRKQIFKVHLNKLKLKSVQDIDAKQKDVDFSK-YQQLKNEEIEKL 504


>gi|307545651|ref|YP_003898130.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Halomonas
           elongata DSM 2581]
 gi|307217675|emb|CBV42945.1| K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
           [Halomonas elongata DSM 2581]
          Length = 759

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S R+++  LDR     + GQ +A  +++ A++              +    + L  GPTG
Sbjct: 450 SDRKLLENLDRDLKMLVFGQDEAIDSLSAAIK-----LSRAGLKSPDKPVGSFLFAGPTG 504

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++R+LA + G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 505 VGKTEVARQLAHIMGIDLVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAITKQPH 564

Query: 113 I 113
            
Sbjct: 565 C 565


>gi|221124416|ref|XP_002164139.1| PREDICTED: similar to Clan MA, family M41, FtsH endopeptidase-like
           metallopeptidase [Hydra magnipapillata]
          Length = 510

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 34  DVAGCDEAKEEVKEVVDFLKDPSKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 88

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 89  EAKVPFFSISGSDFVEM-FVGVGASRVRDMFENAKKNAPCIIFIDEIDAV 137


>gi|145507119|ref|XP_001439517.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406707|emb|CAK72120.1| unnamed protein product [Paramecium tetraurelia]
          Length = 799

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   +     L+   + +++ A L     P+  LL GP G GKT +++  A
Sbjct: 341 NDVAGLDEAKLEIKEFVDFLKKPRKFKEMGAKL-----PRGALLAGPPGTGKTMVAKACA 395

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  + F E+ +VG    ++ RDL   A
Sbjct: 396 GEAGVPFFFVSGSDFVEM-FVGVGASRV-RDLFKQA 429


>gi|15836698|ref|NP_297386.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|9104871|gb|AAF82906.1|AE003863_8 cell division protein [Xylella fastidiosa 9a5c]
          Length = 645

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|121602591|ref|YP_988888.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bartonella
           bacilliformis KC583]
 gi|120614768|gb|ABM45369.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bartonella
           bacilliformis KC583]
          Length = 788

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   I GQ  A  A+  +++              E    N L  GPTGVGKT +++
Sbjct: 457 LEKELKHVIYGQDQAITALVSSIK-----LARAGLREPEKPIGNYLFSGPTGVGKTEVAK 511

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA   G   ++ +++++ E            GYVG +   ++ D VD   +
Sbjct: 512 QLASSLGIELLRFDMSEYMERHTVARLIGAPPGYVGFDQGGLLTDAVDQKPH 563


>gi|71275933|ref|ZP_00652216.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71900019|ref|ZP_00682164.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|170729313|ref|YP_001774746.1| cell division protein [Xylella fastidiosa M12]
 gi|71163310|gb|EAO13029.1| Peptidase M41, FtsH [Xylella fastidiosa Dixon]
 gi|71730229|gb|EAO32315.1| Peptidase M41, FtsH [Xylella fastidiosa Ann-1]
 gi|167964106|gb|ACA11116.1| cell division protein [Xylella fastidiosa M12]
          Length = 645

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 166 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 221 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 256


>gi|332886186|gb|EGK06430.1| ATP-dependent zinc metalloprotease FtsH [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+N  R  ++   +     PK  LLVGP G GKT +++ +A
Sbjct: 195 KDVAGLSEAKEEIEEIVEFLKNPSRYTEIGGKI-----PKGALLVGPPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GEADVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 283


>gi|317012217|gb|ADU82825.1| cell division protease FtsH [Helicobacter pylori Lithuania75]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|154505541|ref|ZP_02042279.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149]
 gi|153794199|gb|EDN76619.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149]
          Length = 606

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G Q+ K  +A  +   ++  +  Q+ A +     PK +LL GP G GKT +++ +A 
Sbjct: 165 DVAGLQEEKEELAEIVDFLKSPKKYVQVGARI-----PKGVLLEGPPGTGKTLLAKAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  + +D    A  I+     D V
Sbjct: 220 EAGVPFFTISGSDFVEM-FVGVGASRVRDLFQDAKKNAPCIIFIDEIDAV 268


>gi|153830956|ref|ZP_01983623.1| ATP-dependent metallopeptidase HflB [Vibrio cholerae 623-39]
 gi|148873569|gb|EDL71704.1| ATP-dependent metallopeptidase HflB [Vibrio cholerae 623-39]
          Length = 578

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|114797326|ref|YP_758892.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
 gi|114737500|gb|ABI75625.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
          Length = 639

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A
Sbjct: 155 DDVAGVDEAKEELQEIVEFLQDPSKFQRLGGKI-----PKGALLVGPPGTGKTLLARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 210 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 243


>gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi]
 gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi]
          Length = 850

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 113/302 (37%), Gaps = 45/302 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  ++K  +      ++NR R Q++ A +     PK +LLVGP G GKT ++R +A  
Sbjct: 154 IAGIDESKIELLEVVDFIKNRERYQEMGARM-----PKGVLLVGPPGSGKTMLARAVATE 208

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S +A   
Sbjct: 209 ANVPYIYTSGPEFIEI-YVGQGAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSTSASN- 266

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD------------- 180
                          +   + L + +     + I V   ++ I   D             
Sbjct: 267 -------GAGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIV 319

Query: 181 -IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            +P     G   + E++ K + S         + +  P     + + L++  T+    + 
Sbjct: 320 YVPLPDVNGRKKILEIYIKKIKSNLNANDIERMSRLTPGFSGADLENLVNEATI----LA 375

Query: 240 MVENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTD 294
                 +V ++E     DK+        +  S    QR +    E G ++   +    TD
Sbjct: 376 TRNKKSLVTINELFEARDKVSMGPERKSLKQSEH--QRRITAYHEAGHAIVAYFLHPKTD 433

Query: 295 HI 296
            I
Sbjct: 434 PI 435


>gi|33866121|ref|NP_897680.1| cell division protein FtsH3 [Synechococcus sp. WH 8102]
 gi|33639096|emb|CAE08102.1| cell division protein FtsH3 [Synechococcus sp. WH 8102]
          Length = 624

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKQELTEIVDFLKTPERYAEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 258


>gi|328551770|gb|AEB22262.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens TA208]
          Length = 639

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|330447383|ref|ZP_08311032.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491574|dbj|GAA05529.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 602

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 106 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 160

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 161 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 209


>gi|317177190|dbj|BAJ54979.1| cell division protein [Helicobacter pylori F16]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|308061729|gb|ADO03617.1| cell division protein (ftsH) [Helicobacter pylori Cuz20]
 gi|315586369|gb|ADU40750.1| cell division protein FtsH [Helicobacter pylori 35A]
 gi|317179228|dbj|BAJ57016.1| cell division protein [Helicobacter pylori F30]
 gi|317181720|dbj|BAJ59504.1| cell division protein [Helicobacter pylori F57]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|261839226|gb|ACX98991.1| cell division protein (ftsH) [Helicobacter pylori 52]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|188527188|ref|YP_001909875.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|188143428|gb|ACD47845.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|308063240|gb|ADO05127.1| cell division protein (ftsH) [Helicobacter pylori Sat464]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 769

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAG 78
            GQ+  KR +   +    +  +   +  D     PK +LL GP G GKT +++ +A  AG
Sbjct: 235 AGQEYVKRELQEVV----KILKDSKEFEDLGIYCPKGVLLYGPPGTGKTLLAKAIAGEAG 290

Query: 79  APFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEVREQ 125
            PF      +F E+ +VG     V  +       A +IV     D +  +
Sbjct: 291 VPFFSASGAEFVEM-FVGVAAARVRDLFTRARQFAPSIVFIDEIDAIGAK 339


>gi|58582572|ref|YP_201588.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427166|gb|AAW76203.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 648

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|78062370|ref|YP_372278.1| FtsH-2 peptidase [Burkholderia sp. 383]
 gi|77970255|gb|ABB11634.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383]
          Length = 692

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 203 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 258 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 291


>gi|332673225|gb|AEE70042.1| cell division protein FtsH [Helicobacter pylori 83]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44]
 gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44]
          Length = 642

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L++  +   + A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKI-----PKGVLLAGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 245


>gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 656

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 97/273 (35%), Gaps = 37/273 (13%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 165 DVAGADEAIEELQEIKEFLQAPAKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---- 126
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V R +     
Sbjct: 220 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQAKANAPAIIFIDEIDAVGRHRGAGLG 277

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A +N  ++    L      D+++ ++  D  
Sbjct: 278 GGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQVTVDRPDLE 337

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                  + G        +          G       +V      L      +LI M+ +
Sbjct: 338 GRKGILKVHGRGKPFAEGVELDIIARRTPGFTGADLANVINEAALLTARADQKLITMEML 397

Query: 234 HRDSIQMV----ENYGIVFLDEFDKIVARDSGN 262
             +SI  V    E    V  D+  KI+A   G 
Sbjct: 398 -EESIDRVMAGPERKTRVMSDQEKKIIAYHEGG 429


>gi|154684588|ref|YP_001419749.1| hypothetical protein RBAM_000800 [Bacillus amyloliquefaciens FZB42]
 gi|154350439|gb|ABS72518.1| FtsH [Bacillus amyloliquefaciens FZB42]
          Length = 639

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|108562803|ref|YP_627119.1| cell division protein [Helicobacter pylori HPAG1]
 gi|298736681|ref|YP_003729209.1| cell division protease FtsH [Helicobacter pylori B8]
 gi|107836576|gb|ABF84445.1| cell division protein [Helicobacter pylori HPAG1]
 gi|298355873|emb|CBI66745.1| cell division protease FtsH [Helicobacter pylori B8]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|15645683|ref|NP_207860.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|2492508|sp|P71408|FTSH_HELPY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2314219|gb|AAD08115.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|317180726|dbj|BAJ58512.1| cell division protein [Helicobacter pylori F32]
          Length = 632

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|311029001|ref|ZP_07707091.1| cell division protease FtsH [Bacillus sp. m3-13]
          Length = 644

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  ++L   + PK +LLVGP G GKT ++R +A  A
Sbjct: 164 KDVAGADEEKQEL-VEVVEFLKDPRKFSELGARI-PKGVLLVGPPGTGKTLLARAVAGEA 221

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 222 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 255


>gi|308182547|ref|YP_003926674.1| cell division protein [Helicobacter pylori PeCan4]
 gi|308064732|gb|ADO06624.1| cell division protein [Helicobacter pylori PeCan4]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|297379599|gb|ADI34486.1| ATP-dependent metalloprotease FtsH [Helicobacter pylori v225d]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27]
 gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27]
          Length = 642

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L++  +   + A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKI-----PKGVLLAGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 245


>gi|242095232|ref|XP_002438106.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
 gi|241916329|gb|EER89473.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor]
          Length = 687

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L++  +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 225 DDVAGVDEAKQDFQEIVQFLKSPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 279

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  +       A  +V     D V
Sbjct: 280 GEAGVPFFSLSGSEFIEM-FVGVGASRVRDLFSKAKANAPCLVFIDEIDAV 329


>gi|153870953|ref|ZP_02000243.1| ATP-dependent metalloprotease FtsH [Beggiatoa sp. PS]
 gi|152072583|gb|EDN69759.1| ATP-dependent metalloprotease FtsH [Beggiatoa sp. PS]
          Length = 638

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGVDEAKEEVSELVEFLRDPAKFQNLGGKI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|81300123|ref|YP_400331.1| FtsH-2 peptidase [Synechococcus elongatus PCC 7942]
 gi|81169004|gb|ABB57344.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus elongatus PCC 7942]
          Length = 623

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + +   L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 170 DVAGVEEAKAELQEIVDFLKTPERYLNIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 EARVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA 257


>gi|21231166|ref|NP_637083.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768826|ref|YP_243588.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991941|ref|YP_001903951.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21112805|gb|AAM41007.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574158|gb|AAY49568.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733701|emb|CAP51906.1| Cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. campestris]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|15611424|ref|NP_223075.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|6647534|sp|Q9ZM66|FTSH_HELPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|4154882|gb|AAD05932.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|149238988|ref|XP_001525370.1| heat shock protein 104 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450863|gb|EDK45119.1| heat shock protein 104 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 908

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + ++GQ +A +A+A A+R R       + L D   P + L +G TG GKT +++
Sbjct: 571 LESELSKEVVGQGEAVKAIANAVRLR------RSGLSDPNQPPSFLFLGSTGTGKTVLAK 624

Query: 72  RLARLAGA---PFIKVEVTKFTEIGYV 95
           +LA    A      +++ ++ TE   V
Sbjct: 625 KLAGFLFADERAMTRIDCSELTEKHTV 651


>gi|170722577|ref|YP_001750265.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida W619]
 gi|169760580|gb|ACA73896.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudomonas
           putida W619]
          Length = 756

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDQAIDSLATAIK-----LSRAGLKAPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|114569836|ref|YP_756516.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Maricaulis
           maris MCS10]
 gi|114340298|gb|ABI65578.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Maricaulis
           maris MCS10]
          Length = 770

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           S R + +EL   + GQ +A   ++ A++         A LR+   P    L  GPTGVGK
Sbjct: 451 SLRNLETELKHVVFGQDEAISQLSTAIK------LSRAGLREPNKPIGCYLFSGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           T ++++LA   G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 505 TEVTKQLADTMGVELQRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 562


>gi|107026275|ref|YP_623786.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU
           1054]
 gi|116692537|ref|YP_838070.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia
           HI2424]
 gi|105895649|gb|ABF78813.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           AU 1054]
 gi|116650537|gb|ABK11177.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia
           HI2424]
          Length = 658

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria
           annulata]
 gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue),
           putative [Theileria annulata]
          Length = 805

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
           + I+G  +AK  V   +    +  + P   +     +PK ILLVGP G GKT +++ +A 
Sbjct: 231 KDILGIDEAKEDVQEIV----KFIKQPFLYKKVGAKVPKGILLVGPPGTGKTMLAKAVAT 286

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQ 125
             G PFI     +F EI YVG+  ++I    +    +A  I+     D V  +
Sbjct: 287 ETGIPFIYTSGPEFVEI-YVGQGAQRIRALFQKARKIAPCIIFIDEIDAVGSK 338


>gi|83950866|ref|ZP_00959599.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           nubinhibens ISM]
 gi|83838765|gb|EAP78061.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           nubinhibens ISM]
          Length = 872

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R +IGQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEENLHRRVIGQNQAVKAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 615 KAVAEFLFDDDSAMVRIDMSEFMEKHSVAR 644


>gi|329120416|ref|ZP_08249082.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462100|gb|EGF08428.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 682

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V+  +      NR++            MP+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVSEIVDYLKAPNRYQSLGG-------RMPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|313836400|gb|EFS74114.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL037PA2]
 gi|314928864|gb|EFS92695.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL044PA1]
 gi|314971258|gb|EFT15356.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL037PA3]
 gi|328906389|gb|EGG26164.1| ATP-dependent chaperone protein ClpB [Propionibacterium sp. P08]
          Length = 857

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKAVSDAVR------RSRAGISDPNHPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         ++++++++ E   V R V
Sbjct: 617 KSLAQFLFDDETAMVRIDMSEYMEKHSVSRLV 648


>gi|307153166|ref|YP_003888550.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306983394|gb|ADN15275.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 639

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L+   +   + A +     PK +LL+GP G GKT +++ +A
Sbjct: 187 EDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAIA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  ++F E+ +VG     V  + +   + A  +V     D V
Sbjct: 242 GEAAVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFIDEIDAV 291


>gi|294626636|ref|ZP_06705233.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599056|gb|EFF43196.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|198284351|ref|YP_002220672.1| ATP-dependent metalloprotease FtsH [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666706|ref|YP_002427013.1| cell division protein FtsH [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248872|gb|ACH84465.1| ATP-dependent metalloprotease FtsH [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518919|gb|ACK79505.1| cell division protein FtsH [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 641

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +A  +   R+  + Q+L   +     PK +LL+G  G GKT ++R +A 
Sbjct: 159 DVAGIEEAKDELAEIVEFLRDPQKFQRLGGRI-----PKGVLLMGSPGSGKTLLARAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 214 EARVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 249


>gi|170738214|ref|YP_001779474.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
 gi|169820402|gb|ACA94984.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3]
          Length = 658

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|308171960|ref|YP_003918665.1| cell-division protein and general stress protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604824|emb|CBI41195.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens DSM 7]
 gi|328910030|gb|AEB61626.1| cell-division protein and general stress protein (class III
           heat-shock) [Bacillus amyloliquefaciens LL3]
          Length = 639

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|303272557|ref|XP_003055640.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463614|gb|EEH60892.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 391

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 26/166 (15%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + R          ++P  +LL GP G GKT ++R LA  A  PF  V  T+F E+ +VG 
Sbjct: 29  YLRDYQKFVAAGAVIPAGVLLCGPPGTGKTLLARCLAGEANVPFFAVAGTEFMEM-FVGV 87

Query: 98  NVEQIIRDLVDVA----------INIVRESRRDEVREQASINAEERI---------LDAL 138
              +I R+L   A                + R +   QA    +E++         +D  
Sbjct: 88  GAARI-RNLFQQARAVRPCIVFIDEFDSVAVRRKDASQAEQGNDEQVATINQLLTEMDGF 146

Query: 139 VGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
            G +     A +N   V    L      D+ I++ + + S+ I   
Sbjct: 147 GGNSGVMIFAATNRPHVIDPALIRPGRFDRVIEMPLPNRSARIDII 192


>gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa]
 gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT ++R +A  AG PF  V  ++F E+ +VGR   +I RDL + A
Sbjct: 300 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAARI-RDLFNAA 356


>gi|208434325|ref|YP_002265991.1| cell division protein [Helicobacter pylori G27]
 gi|208432254|gb|ACI27125.1| cell division protein [Helicobacter pylori G27]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|84624458|ref|YP_451830.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368398|dbj|BAE69556.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|16329602|ref|NP_440330.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492513|sp|P72991|FTSH3_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|1652085|dbj|BAA17010.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 616

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R  +L A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEQAKLELTEVVDFLKNADRFTELGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 249


>gi|325970630|ref|YP_004246821.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324025868|gb|ADY12627.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 651

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           L+FN +  +IV+E D       + G  ++K     V   L++  +  ++   +     PK
Sbjct: 188 LSFNQNKAKIVAEGDTGVRFDDVAGADESKYELEEVVDFLKHPDKYTEIGGKI-----PK 242

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +LLVGP G GKT +++ +A  AG PF K+    F E+ +VG    ++ RDL   A
Sbjct: 243 GVLLVGPPGTGKTLLAKAVAGEAGVPFFKMSGADFVEM-FVGVGAARV-RDLFRQA 296


>gi|221203042|ref|ZP_03576061.1| putative Cell division protease FtsH homolog [Burkholderia
           multivorans CGD2]
 gi|221176976|gb|EEE09404.1| putative Cell division protease FtsH homolog [Burkholderia
           multivorans CGD2]
          Length = 676

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 190 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 245 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 278


>gi|152980704|ref|YP_001353927.1| peptidase M41 (cell division protein) [Janthinobacterium sp.
           Marseille]
 gi|151280781|gb|ABR89191.1| peptidase M41 (cell division protein) [Janthinobacterium sp.
           Marseille]
          Length = 627

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  R Q+L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 158 DVAGCDEAKEEVGELVDFLRDPTRFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDNAKKH 248


>gi|149003154|ref|ZP_01828063.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP14-BS69]
 gi|147758895|gb|EDK65891.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP14-BS69]
          Length = 315

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 291


>gi|16802266|ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e]
 gi|224500329|ref|ZP_03668678.1| hypothetical protein LmonF1_11934 [Listeria monocytogenes Finland
           1988]
 gi|224503460|ref|ZP_03671767.1| hypothetical protein LmonFR_13282 [Listeria monocytogenes FSL
           R2-561]
 gi|254829311|ref|ZP_05233998.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|254832459|ref|ZP_05237114.1| hypothetical protein Lmon1_13976 [Listeria monocytogenes 10403S]
 gi|255028436|ref|ZP_05300387.1| hypothetical protein LmonL_03016 [Listeria monocytogenes LO28]
 gi|284803041|ref|YP_003414906.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284996182|ref|YP_003417950.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
 gi|16409585|emb|CAD00747.1| ftsH [Listeria monocytogenes EGD-e]
 gi|258601724|gb|EEW15049.1| ftsH [Listeria monocytogenes FSL N3-165]
 gi|284058603|gb|ADB69544.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578]
 gi|284061649|gb|ADB72588.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923]
          Length = 691

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
 gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans
           SRS30216]
          Length = 659

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K+    +P+   +     + G  +A   +      L++  +   + A +     PK +LL
Sbjct: 155 KMMTKDTPKTTFA----DVAGADEAVEELHEIKEFLQDSSKFLAVGAKI-----PKGVLL 205

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 206 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 642

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L++  +   + A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKI-----PKGVLLAGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 245


>gi|301167863|emb|CBW27448.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Bacteriovorax marinus SJ]
          Length = 784

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68
           + + S L   I GQ +A   V+ A+          + L  E  P  N L  GPTGVGKT 
Sbjct: 486 KNLKSNLHLVIYGQDEAVEKVSDAI------ILSRSGLGHENKPMANFLFAGPTGVGKTE 539

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++R+LA   G+   + +++++ E            GYVG +   ++ D V    + 
Sbjct: 540 LARQLAHNLGSHLERFDMSEYMEKHSVAKLIGAPPGYVGYDNGGLLTDAVKKNPHC 595


>gi|297620921|ref|YP_003709058.1| putative cell division protein FtsH [Waddlia chondrophila WSU
           86-1044]
 gi|297376222|gb|ADI38052.1| putative cell division protein FtsH [Waddlia chondrophila WSU
           86-1044]
          Length = 920

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 107/321 (33%), Gaps = 62/321 (19%)

Query: 3   LTFNFSP-----REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  SP     +E      + + G  +A   +      LRN  +   L   +     PK
Sbjct: 406 MNFGKSPAKLMTKETNKITFKDVAGVDEALEELQEIVEFLRNPKKFTALGGHI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAI 111
            +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    +   +       A 
Sbjct: 461 GVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASRIRDMFEQAKKNAP 519

Query: 112 NIVRESRRDEV-REQA---------SINAEERILDALVGKT--------ATSNTREVFRK 153
            I+     D V R +                ++L  + G          A +N  +V  K
Sbjct: 520 CIIFIDEIDAVGRHRGAGIGGGHDEREQTLNQLLVEMDGFDTTDGVILIAATNRPDVLDK 579

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIP-----------------GGASVGILNLSELF 196
            L      D+ + + + D         +                  G       +L  + 
Sbjct: 580 ALLRPGRFDRTVIVNLPDIKGRHEILKVHAKKIKMDDSVDLFTVARGTPGASGADLENIL 639

Query: 197 SKVMGSGRKKKIR----MSVQKCYPELMRDESDRLIDMDT------VHRDSIQMVENYGI 246
           ++      +K+      + V +   +++  +  R ++MD        + +S   +    +
Sbjct: 640 NEAALIAARKEKTAVTNIDVLEARDKVLFGKERRSLEMDENEKLTTAYHESGHTIVGLAV 699

Query: 247 VFLDEFDKIVARDSGNGIGVS 267
              D  DK+     G  +G +
Sbjct: 700 EHSDPIDKVTIIPRGMSLGST 720


>gi|254779068|ref|YP_003057173.1| ATP-dependent zinc-metallo protease; putative signal peptide
           [Helicobacter pylori B38]
 gi|254000979|emb|CAX28923.1| ATP-dependent zinc-metallo protease; putative signal peptide
           [Helicobacter pylori B38]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|256829858|ref|YP_003158586.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579034|gb|ACU90170.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           EL   + GQ++A   +A A+    +R +       E    + LL GPTGVGKT ++++LA
Sbjct: 446 ELGSKVFGQKEAVAQLAQAI----KRSR-AGLGNAERPLGSFLLSGPTGVGKTELAKQLA 500

Query: 75  RLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
                 F++ +++++ E            GYVG     ++ D +    + 
Sbjct: 501 SCLDVAFVRFDMSEYMEKHAVARLIGAPPGYVGFEQGGLLTDAIRKTPHC 550


>gi|148559573|ref|YP_001259087.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella ovis
           ATCC 25840]
 gi|148370830|gb|ABQ60809.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella ovis
           ATCC 25840]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|148242501|ref|YP_001227658.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147850811|emb|CAK28305.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 639

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     V   L+   R   L A      +P+ +LLVGP G GKT +++ +A
Sbjct: 180 DDVAGVEEAKQDLEEVVTFLKQPERFSALGA-----TIPRGVLLVGPPGTGKTLLAKAIA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 235 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENAPCLIFIDEIDAV 284


>gi|115391201|ref|XP_001213105.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
 gi|114194029|gb|EAU35729.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 358 DVHGCDEAKDELQELVEFLLNPDRFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 412

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ R+L + A +               ++R+E   
Sbjct: 413 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQARSKAPAIIFIDELDAIGAKRNERDA 470

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+++ + + D    +
Sbjct: 471 AYVKQTLNQLLTELDGFSQTSGVIIIAATNYPQLLDKALTRPGRFDRKVTVGLPDVRGRM 530

Query: 177 SNF 179
              
Sbjct: 531 DIL 533


>gi|254248360|ref|ZP_04941680.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184]
 gi|124874861|gb|EAY64851.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184]
          Length = 659

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|47097259|ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|254900995|ref|ZP_05260919.1| hypothetical protein LmonJ_14313 [Listeria monocytogenes J0161]
 gi|254913937|ref|ZP_05263949.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
 gi|254938273|ref|ZP_05269970.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|47014359|gb|EAL05332.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610883|gb|EEW23491.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900]
 gi|293591955|gb|EFG00290.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818]
          Length = 691

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|308272839|emb|CBX29443.1| ATP-dependent Clp protease ATP-binding subunit clpA [uncultured
           Desulfobacterium sp.]
          Length = 747

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + + + + GQ DA +++  ++    +R +    +       + L  GPTGVGKT ++R
Sbjct: 450 LENNIKKVVFGQDDAIKSLVTSI----KRSRAGLGIACH-PIGSFLFTGPTGVGKTEVAR 504

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRRD 120
           ++A + G  F++ +++++ E            GY+G +   ++ D +    + V     D
Sbjct: 505 QIAGIMGIEFMRFDMSEYMEKHTVARLIGAPPGYIGFDQGGLLTDGIRKNPHCVL--LFD 562

Query: 121 EVREQASINAEERILDALVGKTATSNT 147
           E+ E+A  +    +L  L   T T N 
Sbjct: 563 EI-EKAHPDIYNILLQVLDHATLTDNN 588


>gi|306844033|ref|ZP_07476628.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           BO1]
 gi|306275788|gb|EFM57512.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           BO1]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K     V   L++  +   + A +     PK +LL
Sbjct: 153 KSRAKLYNEEKKRVTFDDVAGADEEKAELEEVVDFLKDNRKFNAVGARI-----PKGVLL 207

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 208 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 260


>gi|254421464|ref|ZP_05035182.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188953|gb|EDX83917.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 613

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 159 DVAGIDQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|170740499|ref|YP_001769154.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium sp. 4-46]
 gi|168194773|gb|ACA16720.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium sp. 4-46]
          Length = 817

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ +A  A+  +++         A LRD   P  + L  GPTGVGKT ++++LA
Sbjct: 470 LKRVVYGQDNAIEALTASIK------LARAGLRDPDKPIGSYLFAGPTGVGKTEVAKQLA 523

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 524 SALGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|308184180|ref|YP_003928313.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
 gi|308060100|gb|ADO01996.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|294852508|ref|ZP_06793181.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella sp.
           NVSL 07-0026]
 gi|294821097|gb|EFG38096.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella sp.
           NVSL 07-0026]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMESHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|284046875|ref|YP_003397215.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
 gi|310943103|sp|D3EZK2|FTSH3_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|283951096|gb|ADB53840.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
          Length = 749

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +A+  +      L+N  + Q+L   +     PK +LL G  G GKT ++R +A
Sbjct: 241 RDVAGIDEAEAELNEIVDFLKNPQKYQRLGGKI-----PKGVLLSGQPGTGKTLLARAVA 295

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+  VG    ++ RDL   A
Sbjct: 296 GEAGVPFFSMSASEFVEM-IVGVGASRV-RDLFRQA 329


>gi|210134573|ref|YP_002301012.1| cell division protein FtsH [Helicobacter pylori P12]
 gi|210132541|gb|ACJ07532.1| cell division protein FtsH [Helicobacter pylori P12]
          Length = 632

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 660

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 209 DVAGAEEAKTELVEIVEFLKNPDRFSRIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 263

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG  F  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 264 EAGVTFFSISASEFVEL-FVGTGAARV-RDLFEQAKKQ 299


>gi|166712462|ref|ZP_02243669.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|145057|gb|AAA23344.1| ATP-dependent protease [Dichelobacter nodosus]
          Length = 290

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 34/245 (13%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L+  ++GQ+ A  AVA A+R      +  A L D   P  + L +GPTGVGKT + R LA
Sbjct: 1   LNERVVGQKTAVEAVANAIR------RNRAGLSDPKRPIGSFLFLGPTGVGKTELCRTLA 54

Query: 75  RLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +         +++++++F E            GYVG +    + + V      V     D
Sbjct: 55  QFLFDSEENMVRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSV--VLFD 112

Query: 121 EVREQASINAEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEV------ADT 172
           EV E+A  +    +L  L     T        FR  +     +     I++       + 
Sbjct: 113 EV-EKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSDMIQLLAEKSYEEM 171

Query: 173 SSDISNFDIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
            S +    +       I  + E  +F  +  +   +  ++ +++    L   E    ++ 
Sbjct: 172 KSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEE 231

Query: 231 DTVHR 235
           D +++
Sbjct: 232 DAINQ 236


>gi|73541858|ref|YP_296378.1| peptidase M41, FtsH [Ralstonia eutropha JMP134]
 gi|72119271|gb|AAZ61534.1| Peptidase M41, FtsH [Ralstonia eutropha JMP134]
          Length = 627

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 154 QDVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 209 GEAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|21242481|ref|NP_642063.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|294665639|ref|ZP_06730916.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21107929|gb|AAM36599.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292604585|gb|EFF47959.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 648

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|56750248|ref|YP_170949.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685207|dbj|BAD78429.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 627

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + +   L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 174 DVAGVEEAKAELQEIVDFLKTPERYLNIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 EARVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA 261


>gi|254714239|ref|ZP_05176050.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           M644/93/1]
 gi|254717675|ref|ZP_05179486.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           M13/05/1]
 gi|261219516|ref|ZP_05933797.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261322011|ref|ZP_05961208.1| ATP-dependent Clp protease [Brucella ceti M644/93/1]
 gi|260924605|gb|EEX91173.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
 gi|261294701|gb|EEX98197.1| ATP-dependent Clp protease [Brucella ceti M644/93/1]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|239907008|ref|YP_002953749.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           magneticus RS-1]
 gi|239796874|dbj|BAH75863.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio
           magneticus RS-1]
          Length = 762

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 18/113 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ DA  A+A A+       +  A L +   P    LL GPTGVGKT ++
Sbjct: 447 LEGELKNLVFGQNDAVDAIAKAI------LRSRAGLANAGKPTGSFLLAGPTGVGKTELA 500

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           ++LA + G  F++ +++++ E            GYVG +   ++ D +     
Sbjct: 501 KQLAAVLGVHFLRFDMSEYMEKHAVARLIGAPPGYVGFDQGGMLTDAIRKHPY 553


>gi|238019647|ref|ZP_04600073.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
 gi|237863688|gb|EEP64978.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748]
          Length = 642

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     V   L++  +   + A +     PK +LL GP G GKT +++ +A
Sbjct: 154 KDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKI-----PKGVLLAGPPGTGKTLLAKAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 245


>gi|148926085|ref|ZP_01809771.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845564|gb|EDK22656.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 527

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 135 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 189

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 190 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 248

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 249 RGEMSNVER 257


>gi|134094400|ref|YP_001099475.1| cell division protease [Herminiimonas arsenicoxydans]
 gi|133738303|emb|CAL61348.1| Cell division protease [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  R Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 158 DVAGCDEAKEEVTELVEFLRDPTRFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDNAKKH 248


>gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2]
 gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus
           maripaludis S2]
          Length = 371

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 2   KLTFNFSPR---EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           KL  N  P+   +        ++GQ DAK+   I +    +  + P +L  E  PKNIL 
Sbjct: 107 KLENNCKPQNSPKFKETTFEEVVGQIDAKKKCKIVI----KYLENP-ELFGEWAPKNILF 161

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRE 116
            GP G GKT ++R LA     P   ++ T+     +G   + +E +  +  +   +I+  
Sbjct: 162 YGPPGTGKTMLARALATETDVPLYLIKATELIGDHVGDGSKQIESLYENASENTPSIIFI 221

Query: 117 SRRDEV 122
              D +
Sbjct: 222 DELDAI 227


>gi|292492311|ref|YP_003527750.1| ATP-dependent Clp protease ATP-binding subunit clpA [Nitrosococcus
           halophilus Nc4]
 gi|291580906|gb|ADE15363.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosococcus
           halophilus Nc4]
          Length = 753

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S  ++ + L + I GQ +A   ++ A++                   + L  GPTGVGKT
Sbjct: 452 SLAKLEANLKQVIFGQDEAIEVLSSAIK-----MSRSGLGDTGRPVGSFLFAGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            ++R+LA + G   I+ +++++ E            GYVG +   ++ + V
Sbjct: 507 EVTRQLAYVLGIELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAV 557


>gi|270158119|ref|ZP_06186776.1| cell division protease FtsH [Legionella longbeachae D-4968]
 gi|289163616|ref|YP_003453754.1| Cell division protease ftsH [Legionella longbeachae NSW150]
 gi|269990144|gb|EEZ96398.1| cell division protease FtsH [Legionella longbeachae D-4968]
 gi|288856789|emb|CBJ10600.1| Cell division protease ftsH [Legionella longbeachae NSW150]
          Length = 641

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q L   +     P+ +LLVG  G GKT ++R +A 
Sbjct: 157 DVAGVDEAKDEVKELVDFLRDPTKFQNLGGRI-----PRGVLLVGSPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 247


>gi|226470306|emb|CAX70433.1| YME1-Like (Mitochondrial Escape) AAA protease [Schistosoma
           japonicum]
          Length = 627

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      LRN  +   + A L     PK +LLVGP GVGKT +++ ++ 
Sbjct: 167 DVQGCDEVKKELQDIVEFLRNPEKFNHIGAKL-----PKGVLLVGPPGVGKTLLAKAVSG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF+ V  + F E+ +VG    ++ R L   A
Sbjct: 222 EAQVPFLYVSGSSFEEV-FVGLGASRV-RQLFAAA 254


>gi|256061250|ref|ZP_05451401.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           neotomae 5K33]
 gi|261325258|ref|ZP_05964455.1| ATP-dependent Clp protease [Brucella neotomae 5K33]
 gi|261301238|gb|EEY04735.1| ATP-dependent Clp protease [Brucella neotomae 5K33]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|210623232|ref|ZP_03293671.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
 gi|210153769|gb|EEA84775.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275]
          Length = 668

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 12/114 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G Q+ K     V   L+N  +  QL A +     PK IL+VGP G GKT +S+ +A
Sbjct: 159 NDVAGLQEEKEDLQEVVDFLKNPKKYTQLGARI-----PKGILMVGPPGTGKTFLSKAVA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             AG PF  +  + F E+ +VG     V  +  D    A  I+     D V  +
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKNAPAIIFIDEIDAVGRK 266


>gi|170701408|ref|ZP_02892367.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
 gi|170133687|gb|EDT02056.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria
           IOP40-10]
          Length = 655

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK   + +   LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQLVAFLRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|145350390|ref|XP_001419590.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579822|gb|ABO97883.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 651

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK   + V   L+N  +   L A +     PK  LLVGP G GKT I++ +A 
Sbjct: 186 DVAGVEGAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLIAKAVAG 240

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     ++F E+ +VG    ++ RDL + A
Sbjct: 241 EAGVPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 273


>gi|17987099|ref|NP_539733.1| ATP-dependent Clp protease ATP-binding subunit CLPA [Brucella
           melitensis bv. 1 str. 16M]
 gi|23502047|ref|NP_698174.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella suis
           1330]
 gi|62290082|ref|YP_221875.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700007|ref|YP_414581.1| chaperonin ClpA/B [Brucella melitensis biovar Abortus 2308]
 gi|161619120|ref|YP_001593007.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella canis
           ATCC 23365]
 gi|189024320|ref|YP_001935088.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           abortus S19]
 gi|225627637|ref|ZP_03785674.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           str. Cudo]
 gi|225852666|ref|YP_002732899.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella
           melitensis ATCC 23457]
 gi|237815588|ref|ZP_04594585.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus str. 2308 A]
 gi|254689392|ref|ZP_05152646.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus bv. 6 str. 870]
 gi|254693876|ref|ZP_05155704.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697527|ref|ZP_05159355.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254706650|ref|ZP_05168478.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           pinnipedialis M163/99/10]
 gi|254710243|ref|ZP_05172054.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           pinnipedialis B2/94]
 gi|254730422|ref|ZP_05189000.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus bv. 4 str. 292]
 gi|256031737|ref|ZP_05445351.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           pinnipedialis M292/94/1]
 gi|256044824|ref|ZP_05447728.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113729|ref|ZP_05454533.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           melitensis bv. 3 str. Ether]
 gi|256159903|ref|ZP_05457625.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           M490/95/1]
 gi|256255137|ref|ZP_05460673.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           B1/94]
 gi|256257638|ref|ZP_05463174.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus bv. 9 str. C68]
 gi|256263840|ref|ZP_05466372.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260168870|ref|ZP_05755681.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           F5/99]
 gi|260546632|ref|ZP_05822371.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           abortus NCTC 8038]
 gi|260565576|ref|ZP_05836060.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260566298|ref|ZP_05836768.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella suis
           bv. 4 str. 40]
 gi|260754910|ref|ZP_05867258.1| ATP-dependent Clp protease [Brucella abortus bv. 6 str. 870]
 gi|260758127|ref|ZP_05870475.1| ATP-dependent Clp protease [Brucella abortus bv. 4 str. 292]
 gi|260761953|ref|ZP_05874296.1| ATP-dependent Clp protease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883922|ref|ZP_05895536.1| ATP-dependent Clp protease [Brucella abortus bv. 9 str. C68]
 gi|261214162|ref|ZP_05928443.1| ATP-dependent Clp protease [Brucella abortus bv. 3 str. Tulya]
 gi|261222335|ref|ZP_05936616.1| ATP-dependent Clp protease [Brucella ceti B1/94]
 gi|261314111|ref|ZP_05953308.1| ATP-dependent Clp protease [Brucella pinnipedialis M163/99/10]
 gi|261317802|ref|ZP_05956999.1| ATP-dependent Clp protease [Brucella pinnipedialis B2/94]
 gi|261758358|ref|ZP_06002067.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella sp.
           F5/99]
 gi|265988833|ref|ZP_06101390.1| ATP-dependent Clp protease [Brucella pinnipedialis M292/94/1]
 gi|265991248|ref|ZP_06103805.1| ATP-dependent Clp protease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995084|ref|ZP_06107641.1| ATP-dependent Clp protease [Brucella melitensis bv. 3 str. Ether]
 gi|265998299|ref|ZP_06110856.1| ATP-dependent Clp protease [Brucella ceti M490/95/1]
 gi|297248479|ref|ZP_06932197.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella
           abortus bv. 5 str. B3196]
 gi|9542862|emb|CAC00480.1| ClpA protein [Brucella suis]
 gi|17982760|gb|AAL51997.1| ATP-dependent clp protease ATP-binding subunit clpa [Brucella
           melitensis bv. 1 str. 16M]
 gi|23348002|gb|AAN30089.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella suis
           1330]
 gi|62196214|gb|AAX74514.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616108|emb|CAJ11147.1| Chaperonin clpA/B:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:AAA ATPase, central region:Clp, N terminal
           [Brucella melitensis biovar Abortus 2308]
 gi|161335931|gb|ABX62236.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella canis
           ATCC 23365]
 gi|189019892|gb|ACD72614.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           abortus S19]
 gi|225617642|gb|EEH14687.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti
           str. Cudo]
 gi|225641031|gb|ACO00945.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           melitensis ATCC 23457]
 gi|237788886|gb|EEP63097.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           abortus str. 2308 A]
 gi|260095682|gb|EEW79559.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           abortus NCTC 8038]
 gi|260151644|gb|EEW86738.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           melitensis bv. 1 str. 16M]
 gi|260155816|gb|EEW90896.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella suis
           bv. 4 str. 40]
 gi|260668445|gb|EEX55385.1| ATP-dependent Clp protease [Brucella abortus bv. 4 str. 292]
 gi|260672385|gb|EEX59206.1| ATP-dependent Clp protease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675018|gb|EEX61839.1| ATP-dependent Clp protease [Brucella abortus bv. 6 str. 870]
 gi|260873450|gb|EEX80519.1| ATP-dependent Clp protease [Brucella abortus bv. 9 str. C68]
 gi|260915769|gb|EEX82630.1| ATP-dependent Clp protease [Brucella abortus bv. 3 str. Tulya]
 gi|260920919|gb|EEX87572.1| ATP-dependent Clp protease [Brucella ceti B1/94]
 gi|261297025|gb|EEY00522.1| ATP-dependent Clp protease [Brucella pinnipedialis B2/94]
 gi|261303137|gb|EEY06634.1| ATP-dependent Clp protease [Brucella pinnipedialis M163/99/10]
 gi|261738342|gb|EEY26338.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella sp.
           F5/99]
 gi|262552767|gb|EEZ08757.1| ATP-dependent Clp protease [Brucella ceti M490/95/1]
 gi|262766197|gb|EEZ11986.1| ATP-dependent Clp protease [Brucella melitensis bv. 3 str. Ether]
 gi|263002032|gb|EEZ14607.1| ATP-dependent Clp protease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093971|gb|EEZ17905.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264661030|gb|EEZ31291.1| ATP-dependent Clp protease [Brucella pinnipedialis M292/94/1]
 gi|297175648|gb|EFH34995.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brucella
           abortus bv. 5 str. B3196]
 gi|326409187|gb|ADZ66252.1| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella
           melitensis M28]
 gi|326538897|gb|ADZ87112.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella
           melitensis M5-90]
          Length = 824

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
 gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           5701]
          Length = 641

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 183 DDVAGVEEAKEDLEEVVTFLKQPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 238 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 287


>gi|325265684|ref|ZP_08132373.1| ATP-dependent metalloprotease FtsH [Kingella denitrificans ATCC
           33394]
 gi|324982815|gb|EGC18438.1| ATP-dependent metalloprotease FtsH [Kingella denitrificans ATCC
           33394]
          Length = 672

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V   +   + R           +P+ ILL G  G GKT +++ +A  AG
Sbjct: 182 DVAGCDEAKEEVQEIVE--YLRDPSRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG 239

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 240 VPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 269


>gi|310823926|ref|YP_003956284.1| ATP-dependent CLP protease, ATP-binding subunit CLPa [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396998|gb|ADO74457.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 761

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL   I GQ +A + +   ++              E    + L  GPTGVGKT +
Sbjct: 456 QNLEKELRAVIFGQDEAIQNLTSTIK-----LARSGLRSPEKPIGSFLFSGPTGVGKTEL 510

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           +++LA + G  F++ ++++++E            GYVG +   ++ D +     
Sbjct: 511 AKQLAAVLGVEFLRFDMSEYSEKHTVSRLIGAPPGYVGFDQGGLLTDAIRKHPY 564


>gi|256369594|ref|YP_003107104.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella
           microti CCM 4915]
 gi|255999756|gb|ACU48155.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella
           microti CCM 4915]
          Length = 824

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|224118182|ref|XP_002317751.1| predicted protein [Populus trichocarpa]
 gi|222858424|gb|EEE95971.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   L+N  +  +L   L     PK 
Sbjct: 329 YTPKELNKEITPDKNVKTFKDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKL-----PKG 383

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 384 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 442

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 443 IIFIDEIDAV 452


>gi|221196369|ref|ZP_03569416.1| cell division protease FtsH homolog [Burkholderia multivorans
           CGD2M]
 gi|221182923|gb|EEE15323.1| cell division protease FtsH homolog [Burkholderia multivorans
           CGD2M]
          Length = 655

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|195614112|gb|ACG28886.1| FtsH6 - Zea mays FtsH protease
          Length = 691

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L++  +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 228 DDVAGVDEAKQDFQEIVQFLKSPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 282

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 283 GEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFNKA 316


>gi|254416578|ref|ZP_05030329.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176544|gb|EDX71557.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 629

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 164 DVAGIEEAKEELQEVVTFLKQPERFTAIGARI-----PKGVLLVGPPGTGKTMLAKAIAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 219 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 267


>gi|148361108|ref|YP_001252315.1| cell division protein FtsH [Legionella pneumophila str. Corby]
 gi|296108438|ref|YP_003620139.1| cell division protease FtsH [Legionella pneumophila 2300/99 Alcoy]
 gi|148282881|gb|ABQ56969.1| cell division protein FtsH [Legionella pneumophila str. Corby]
 gi|295650340|gb|ADG26187.1| cell division protease FtsH [Legionella pneumophila 2300/99 Alcoy]
          Length = 636

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q L   +     P+ +LLVG  G GKT ++R +A 
Sbjct: 154 DVAGVDEAKEEVKELVDFLRDPTKFQNLGGRI-----PRGVLLVGSPGTGKTLLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 244


>gi|146329099|ref|YP_001209564.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter
           nodosus VCS1703A]
 gi|146232569|gb|ABQ13547.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter
           nodosus VCS1703A]
          Length = 763

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ +A  A+++A++              E    + L  GPTGVGKT +
Sbjct: 448 KTLERDLKTVVFGQDEAIHALSVAIK-----LSRAGLREKEKPIASFLFTGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            R+LA + G   ++ +++++ E   V R
Sbjct: 503 CRQLAHVMGIKLLRFDMSEYMESHTVSR 530


>gi|110800961|ref|YP_697158.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
 gi|110675608|gb|ABG84595.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC
           13124]
          Length = 601

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 KDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|88860504|ref|ZP_01135142.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas tunicata D2]
 gi|88817702|gb|EAR27519.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas tunicata D2]
          Length = 631

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 140 DVAGCDEAKEDVTELVDFLRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAG 194

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 195 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 243


>gi|86150472|ref|ZP_01068697.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596784|ref|ZP_01100021.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562621|ref|YP_002344400.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839067|gb|EAQ56331.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191625|gb|EAQ95597.1| cell division protein FtsH, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360327|emb|CAL35123.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315928364|gb|EFV07679.1| metalloprotease [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 538

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 260 RGEMSNVER 268


>gi|302306487|ref|NP_982906.2| ABL041Wp [Ashbya gossypii ATCC 10895]
 gi|299788539|gb|AAS50730.2| ABL041Wp [Ashbya gossypii ATCC 10895]
          Length = 818

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK  +   +      +R+ R           +P+  +L GP G GKT +++ 
Sbjct: 334 KDVAGCDEAKEEIMEFVSFLKEPSRYERMGAQ-------IPRGAILSGPPGTGKTLLAKA 386

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  AG PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 387 TAGEAGVPFFSVSGSEFVEM-FVGIGASRV-RDLFKTA 422


>gi|284926235|gb|ADC28587.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 538

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 260 RGEMSNVER 268


>gi|258567738|ref|XP_002584613.1| cell division protein ftsH [Uncinocarpus reesii 1704]
 gi|237906059|gb|EEP80460.1| cell division protein ftsH [Uncinocarpus reesii 1704]
          Length = 826

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 29/171 (16%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 363 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 417

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F EI YVG   +++ R+L + A                 ++R+E   
Sbjct: 418 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNQARGKAPAIIFIDELDAIGAKRNERDA 475

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI 167
                   ++L  L G + +S        N  ++  K L      D+++ +
Sbjct: 476 AYVKQTLNQLLTELDGFSQSSGVIILAATNYPQLLDKALTRPGRFDRKVVV 526


>gi|167041780|gb|ABZ06522.1| putative peptidase family M41 [uncultured marine microorganism
           HF4000_093M11]
          Length = 611

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
              P E+    D  + G ++AK   +     L++  + ++L   +     PK +L+ G  
Sbjct: 149 KMEPSEMKVTFDD-VAGVEEAKDDLKETVDFLKDPAKFRKLGGRI-----PKGMLMSGSP 202

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     
Sbjct: 203 GTGKTLLAKAVAGEAEVPFYSMSGSDFVEM-FVGVGASRVRDMFEQGRQNAPCIIFIDEI 261

Query: 120 DEV 122
           D V
Sbjct: 262 DAV 264


>gi|88705678|ref|ZP_01103388.1| cell division protein FtsH [Congregibacter litoralis KT71]
 gi|88700191|gb|EAQ97300.1| cell division protein FtsH [Congregibacter litoralis KT71]
          Length = 644

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGVDEAKEDVQELVEFLRDPGKFQKLGGRI-----PRGVLMVGQPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 248


>gi|332018901|gb|EGI59447.1| AFG3-like protein 2 [Acromyrmex echinatior]
          Length = 670

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A
Sbjct: 165 KDVAGCEEAKIEIMEFV-NFLKNPQQYIDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 222

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 223 NVPFITVSGSEFLEM-FVGVGPSRVRDMFSMARKHAPCILFIDEIDAVGRK 272


>gi|317013821|gb|ADU81257.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 632

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|308505770|ref|XP_003115068.1| CRE-SPG-7 protein [Caenorhabditis remanei]
 gi|308259250|gb|EFP03203.1| CRE-SPG-7 protein [Caenorhabditis remanei]
          Length = 798

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 297 DVAGCEEAKIEIMEFV-NFLKNPQQYKDLGAKI-PKGAILTGPPGTGKTLLAKATAGEAN 354

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PFI V  ++F E+ +VG     V  +       +  I+     D V
Sbjct: 355 VPFITVSGSEFLEM-FVGVGPARVRDMFSMARKNSPCILFIDEIDAV 400


>gi|307824615|ref|ZP_07654839.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307734269|gb|EFO05122.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 647

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V   +   ++  + Q+L   +     P+  L++GP G GKT ++R +A 
Sbjct: 161 DVAGCDEAKEEVVEMVDFLKDPAKYQKLGGKI-----PRGALMIGPPGTGKTLLARAIAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 216 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 251


>gi|254719231|ref|ZP_05181042.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           83/13]
 gi|265984226|ref|ZP_06096961.1| ATP-dependent Clp protease [Brucella sp. 83/13]
 gi|306837980|ref|ZP_07470838.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           NF 2653]
 gi|264662818|gb|EEZ33079.1| ATP-dependent Clp protease [Brucella sp. 83/13]
 gi|306406904|gb|EFM63125.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           NF 2653]
          Length = 824

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|197103300|ref|YP_002128678.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
 gi|196480576|gb|ACG80103.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1]
          Length = 635

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 30/228 (13%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +A  +    +       L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGVDEAKEELAEIV-GFLKDPTTYGRLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
             F  +  ++F E+ +VG    ++ RDL + A            R QA        LDAL
Sbjct: 224 VKFFSITGSEFVEM-FVGVGAARV-RDLFEQA------------RAQAPAIIFIDELDAL 269

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-GILNLSELFS 197
                           L      + E +  +    +++  FD   GA V    N  E+  
Sbjct: 270 GRARGAG---------LDVPGAGNDEKEQTLNQLLAEMDGFDPSAGAIVLAATNRPEILD 320

Query: 198 KVMGSGRKKKIRMSV----QKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             +    +   ++ V    +K   +++     ++   D + R+++  +
Sbjct: 321 PALLRAGRFDRQVLVDRPDRKGRADILAVHLKKINVADGLDRETVAAL 368


>gi|163843433|ref|YP_001627837.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella suis
           ATCC 23445]
 gi|163674156|gb|ABY38267.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella suis
           ATCC 23445]
          Length = 824

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 464 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 517

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 518 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 571


>gi|161520727|ref|YP_001584154.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|160344777|gb|ABX17862.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
          Length = 676

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 190 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 245 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 278


>gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +  ++   +     PK +LL GP G GKT +++ LA 
Sbjct: 181 DVAGLEEEKKEIQELIDFLKHPQKYHKMGFKI-----PKGVLLEGPPGTGKTLLAKALAN 235

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR-ESRRDEVREQASINAEERI 134
               PF  V  ++F E+ YVG    +I RDL   A          DE+    +      I
Sbjct: 236 EVKIPFYAVSGSEFVEV-YVGVGASRI-RDLFQKAKRTTPCIIFIDEIDALGAKRKNNSI 293

Query: 135 LD 136
           ++
Sbjct: 294 IE 295


>gi|71900191|ref|ZP_00682330.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
 gi|71730024|gb|EAO32116.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
          Length = 861

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + ++L R ++GQ +A + V+ A+R      +    L D   P    L +GPTGVGKT + 
Sbjct: 562 MEADLGRRVVGQDEAIKVVSDAVR------RSRTGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|285017507|ref|YP_003375218.1| ATP-dependent clp protease subunit protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472725|emb|CBA15230.1| putative atp-dependent clp protease subunit protein [Xanthomonas
           albilineans]
          Length = 861

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVVGQHEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALAEFLFDSSDAMIRIDMSEFMEKHSVAR 645


>gi|255536557|ref|YP_003096928.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
 gi|255342753|gb|ACU08866.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
          Length = 677

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++ V    + + G + AK  V      L+N  +  +L   +     PK +LLVGP G GK
Sbjct: 197 KDKVQVTFKDVAGLEGAKEEVQEVVDFLKNSDKYTKLGGKI-----PKGVLLVGPPGTGK 251

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 252 TLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFAQA 293


>gi|221209996|ref|ZP_03582977.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1]
 gi|221170684|gb|EEE03150.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1]
          Length = 655

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|212274447|ref|NP_001130462.1| hypothetical protein LOC100191560 [Zea mays]
 gi|194689194|gb|ACF78681.1| unknown [Zea mays]
          Length = 691

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L++  +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 228 DDVAGVDEAKQDFQEIVQFLKSPEKFTAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 282

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 283 GEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFNKA 316


>gi|18311452|ref|NP_563386.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str.
           13]
 gi|168206865|ref|ZP_02632870.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|168211208|ref|ZP_02636833.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215142|ref|ZP_02640767.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|168218230|ref|ZP_02643855.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
 gi|18146136|dbj|BAB82176.1| probable cell-division protein [Clostridium perfringens str. 13]
 gi|170661765|gb|EDT14448.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str.
           JGS1987]
 gi|170710762|gb|EDT22944.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713449|gb|EDT25631.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE
           str. F4969]
 gi|182379753|gb|EDT77232.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC
           8239]
          Length = 601

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 KDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|329120146|ref|ZP_08248816.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463677|gb|EGF09995.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 755

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+A A++            + +    + L  GPTGVGKT
Sbjct: 448 TLKNLARNLKNMVFGQDTAIDALAAAVK-----MSRSGLGQPDKPIGSFLFSGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++R+LA   G P  + +++++ E   V R
Sbjct: 503 EVARQLAYALGVPLQRFDMSEYMERHAVSR 532


>gi|296131747|ref|YP_003638994.1| ATP-dependent metalloprotease FtsH [Thermincola sp. JR]
 gi|296030325|gb|ADG81093.1| ATP-dependent metalloprotease FtsH [Thermincola potens JR]
          Length = 646

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E        + G  + K  +      L++  +  +L A +     PK +LL GP G GKT
Sbjct: 155 EKKRVTFDDVAGADEVKEELQEVVEFLKHPKKFNELGAKI-----PKGVLLYGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 210 LLARAVAGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|78779135|ref|YP_397247.1| FtsH peptidase [Prochlorococcus marinus str. MIT 9312]
 gi|78712634|gb|ABB49811.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 637

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 103/269 (38%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLQEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++         +L+      + S  ++    +       L  +E+  L      
Sbjct: 355 GRLSILEVHARNKKLQEDLT------LESIARRTPGFTGADLANLL--NEAAILT--ARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +DSI + E       D  D+IVA   G+
Sbjct: 405 RKDSISISEID-----DSVDRIVAGMEGS 428


>gi|78047321|ref|YP_363496.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325928792|ref|ZP_08189961.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
 gi|78035751|emb|CAJ23442.1| cell division protein FtsH (ATP-dependent zinc metallopeptidase)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325540873|gb|EGD12446.1| membrane protease FtsH catalytic subunit [Xanthomonas perforans
           91-118]
          Length = 648

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT +++ +A 
Sbjct: 168 DVAGCDEAKEEVGELVDFLRDPTKFTKLGGKI-----PRGVLMVGPPGTGKTLLAKAIAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 223 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 258


>gi|307637074|gb|ADN79524.1| cell division protein [Helicobacter pylori 908]
 gi|325995665|gb|ADZ51070.1| Cell division protein [Helicobacter pylori 2018]
 gi|325997261|gb|ADZ49469.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017]
          Length = 632

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 170 NDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL + A          DE+       A      
Sbjct: 228 HVPFFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------ 279

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A    +      +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 280 AGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 339

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K   +GR + +++ ++
Sbjct: 340 DKPDFNGRVEILKVHIK 356


>gi|284054936|ref|ZP_06385146.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str.
           Paraca]
          Length = 121

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 6   IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 62


>gi|224372652|ref|YP_002607024.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
 gi|223589193|gb|ACM92929.1| endopeptidase clp ATP-binding chain a [Nautilia profundicola AmH]
          Length = 720

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 96/256 (37%), Gaps = 37/256 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A + +   +    +R++     R++    + L VGPTGVGKT I
Sbjct: 427 RNLEGNLKAKVFGQDQAIKELVKVI----KRKK-AGLTREDKPIGSFLFVGPTGVGKTEI 481

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE-----VRE 124
           +++LA + G  F++ +++++ E   V + +      +      ++ E+ R +     + +
Sbjct: 482 AKQLASILGVNFMRFDMSEYQEKHSVAKLIGSPPGYVGYEKGGLLTEAIRKQPHTVLLLD 541

Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
           +      + +   L      S T    RK       +D    + +  ++  +   + PG 
Sbjct: 542 EIEKAHPDIVQILLQVMDNASLTDNDGRK-------ADFRNVVLIMTSNLGVGEGNNPGF 594

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244
                    E   +        ++   V+  +  L  +    ++D               
Sbjct: 595 LQEFAEFKEEAIERFFAPEFINRLDAIVR--FKPLSHESVMLVVDK-------------- 638

Query: 245 GIVFLDEF-DKIVARD 259
              F+DE  DK+ ++ 
Sbjct: 639 ---FIDELQDKLSSKK 651



 Score = 38.0 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE   R    V  K L+     L++       I + ++ + ++ + L  T+ + +ALA
Sbjct: 610 FAPEFINRLDAIVRFKPLSHESVMLVVDK----FIDELQDKLSSKKVKLTLTKRAKNALA 665

Query: 372 DVAVNLNSTVGDIGARRLQTVMER-----VLEDISFSASDLQEKTVVIDAEYVRLH 422
                       +GAR L  ++E      + ++I F         V +D  YV+  
Sbjct: 666 K-----KGYSPKLGARPLARIIEENIVEPLSDEILF-GDLKGGGEVKVD--YVKDK 713


>gi|198424141|ref|XP_002124796.1| PREDICTED: similar to paraplegin [Ciona intestinalis]
          Length = 743

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 20/141 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK+ V   + +  +R      L    MPK  LL GP GVGKT +++ +A  +
Sbjct: 273 KDVAGMKEAKQEVMEFV-DFLKRPDKYKTLGA-KMPKGCLLTGPPGVGKTLLAKAVASES 330

Query: 78  GAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
           G PFI    + F E+  G   + V Q+  +   +A  IV                    L
Sbjct: 331 GVPFIPKSGSDFVELIGGLGAKRVRQLFENARKMAPCIVYIDE----------------L 374

Query: 136 DALVGKTATSNTREVFRKKLR 156
           DA+ G+   SN+ +   +K R
Sbjct: 375 DAIGGQRKDSNSYQDSSEKDR 395


>gi|169343167|ref|ZP_02864188.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169298719|gb|EDS80795.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 601

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 KDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|157690851|ref|YP_001485313.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
 gi|157679609|gb|ABV60753.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032]
          Length = 634

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 161 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 218

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 219 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 252


>gi|78776658|ref|YP_392973.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
 gi|78497198|gb|ABB43738.1| AAA ATPase [Sulfurimonas denitrificans DSM 1251]
          Length = 725

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            S   +   L + +IGQ  A   V  A++             +     + L  GPTGVGK
Sbjct: 428 LSLINLQESLKQRVIGQDKAVEEVTKAIK-----ISKAGLTPEGKPIASFLFSGPTGVGK 482

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           T ++  L+ + G  F + +++++ E            GYVG     ++ + +      
Sbjct: 483 TELALSLSEILGVNFERFDMSEYMEKHALSRLIGAPPGYVGYEQGGLLTEAIKKHPYS 540


>gi|148256119|ref|YP_001240704.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bradyrhizobium
           sp. BTAi1]
 gi|146408292|gb|ABQ36798.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bradyrhizobium
           sp. BTAi1]
          Length = 796

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L R + GQ  A  +++ +++              E      L  GPTGVGKT +
Sbjct: 458 KHLEQTLKRVVFGQDKAIDSLSASIK-----LARAGLREPEKPIGCYLFSGPTGVGKTEV 512

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 513 AKQLAATLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 567


>gi|145220308|ref|YP_001131017.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206472|gb|ABP37515.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeovibrioides DSM
           265]
          Length = 661

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V      + G  +A   +      L N  + Q++   +     PK +LL+GP G GKT +
Sbjct: 205 VKTTFNDVAGVDEAVEELQETVEFLTNPEKFQKVGGKI-----PKGVLLLGPPGTGKTLL 259

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           ++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 260 AKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFEQAKKN 301


>gi|307611666|emb|CBX01357.1| cell division protease ftsH [Legionella pneumophila 130b]
          Length = 636

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q L   +     P+ +LLVG  G GKT ++R +A 
Sbjct: 154 DVAGVDEAKEEVKELVDFLRDPTKFQNLGGRI-----PRGVLLVGSPGTGKTLLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 244


>gi|109947710|ref|YP_664938.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714931|emb|CAJ99939.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str.
           Sheeba]
          Length = 635

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +     A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 176 AGNEEAKEEVVEIV-DFLKYPDRYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 233

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 234 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 285

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 286 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 345

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 346 DFNGRVEILKVHIK 359


>gi|52842993|ref|YP_096792.1| cell division protein FtsH [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295624|ref|YP_128039.1| cell division protease ftsH [Legionella pneumophila str. Lens]
 gi|54298778|ref|YP_125147.1| cell division protease ftsH [Legionella pneumophila str. Paris]
 gi|52630104|gb|AAU28845.1| cell division protein FtsH [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752563|emb|CAH13995.1| Cell division protease ftsH [Legionella pneumophila str. Paris]
 gi|53755456|emb|CAH16952.1| Cell division protease ftsH [Legionella pneumophila str. Lens]
          Length = 639

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q L   +     P+ +LLVG  G GKT ++R +A 
Sbjct: 157 DVAGVDEAKEEVKELVDFLRDPTKFQNLGGRI-----PRGVLLVGSPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 247


>gi|75761782|ref|ZP_00741718.1| Cell division protein ftsH / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490732|gb|EAO54012.1| Cell division protein ftsH  / Peptidase family M41 [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 267

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E      R + G  + K+ +      L++  +  ++ A +     PK +LLVGP G GKT
Sbjct: 155 EKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGKT 209

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            ++R +A  AG PF  +  + F E+ +VG    ++
Sbjct: 210 LLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV 243


>gi|306841892|ref|ZP_07474572.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           BO2]
 gi|306288022|gb|EFM59424.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella sp.
           BO2]
          Length = 779

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R + GQ  A  A++ +++         A LR+   P  + L  GPTGVGKT ++
Sbjct: 419 LEAELKRVVYGQDLAIDALSASIK------LARAGLREPDKPIGSYLFSGPTGVGKTEVA 472

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 473 KQLASSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 526


>gi|258544934|ref|ZP_05705168.1| cell division protein FtsH [Cardiobacterium hominis ATCC 15826]
 gi|258519854|gb|EEV88713.1| cell division protein FtsH [Cardiobacterium hominis ATCC 15826]
          Length = 637

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILL 58
           K      P + +      + G  +AK  V   +   R+  +  +L   +     P+ +L+
Sbjct: 142 KSRARLIPEDKIKVTFADVAGADEAKADVVEMVEFLRDPSKFSRLGGQI-----PRGLLM 196

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 197 VGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEEAKKH 249


>gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1]
 gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1]
          Length = 673

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|189353088|ref|YP_001948715.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|189337110|dbj|BAG46179.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 655

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|194476661|ref|YP_002048840.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora]
 gi|171191668|gb|ACB42630.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora]
          Length = 629

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L+   +   L A +     PK  LLVGP G GKT +++ +A
Sbjct: 180 NDVAGVDEAKQDLEEIVTFLKTPDKFTSLGAKI-----PKGALLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 235 GEAGVPFFALSGSEFVEM-FVGVGASRVRDLFKRAKENSPCMIFIDEIDAV 284


>gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
 gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
          Length = 552

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 28/199 (14%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           ++  +  P+ + +     + G  + K  +      L++  +            MPK +LL
Sbjct: 139 EMKMDIKPQ-VSAYTFDDVAGIDEVKEELEEIIDFLKDPKKYTSFG-----VRMPKGVLL 192

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
           VGP GVGKT I++ +A  AG PF     + F +I YVG     V ++ +   ++A +IV 
Sbjct: 193 VGPPGVGKTLIAKAVAGEAGVPFFYQSGSAFVQI-YVGMGAKRVRELFKKAKEMAPSIVF 251

Query: 116 ESRRDEV-REQASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEI 160
               D V + +  +  +ER      +L  + G  A+S        N  EV  + L     
Sbjct: 252 IDEIDAVGKARGGMRNDEREATLNQLLTEMDGFEASSGVIVIGATNKIEVLDEALLRPGR 311

Query: 161 SDKEIDIEVADTSSDISNF 179
            D+ I + + +    +   
Sbjct: 312 FDRRIYVALPNKEDRMKIL 330


>gi|71279193|ref|YP_270126.1| ATP-dependent metalloprotease FtsH [Colwellia psychrerythraea 34H]
 gi|71144933|gb|AAZ25406.1| ATP-dependent metalloprotease FtsH [Colwellia psychrerythraea 34H]
          Length = 660

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 6   NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
             S  +I +     + G  +AK  VA  +   + R+          +P  ILLVG  G G
Sbjct: 143 QLSEEQIKTTF-ADVAGCDEAKEDVAELVD--YLREPSRFQKLGGRIPSGILLVGQPGTG 199

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           KT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 200 KTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|37680899|ref|NP_935508.1| ATP-dependent Zn protease [Vibrio vulnificus YJ016]
 gi|320155434|ref|YP_004187813.1| cell division protein FtsH [Vibrio vulnificus MO6-24/O]
 gi|326423870|ref|NP_760579.2| cell division protein FtsH [Vibrio vulnificus CMCP6]
 gi|37199649|dbj|BAC95479.1| ATP-dependent Zn protease [Vibrio vulnificus YJ016]
 gi|319930746|gb|ADV85610.1| cell division protein FtsH [Vibrio vulnificus MO6-24/O]
 gi|319999243|gb|AAO10106.2| Cell division protein ftsH [Vibrio vulnificus CMCP6]
          Length = 653

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 146 MSEEQIKTTFGD-VAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 199

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|116668719|ref|YP_829652.1| Mername-AA223 peptidase [Arthrobacter sp. FB24]
 gi|116608828|gb|ABK01552.1| membrane protease FtsH catalytic subunit [Arthrobacter sp. FB24]
          Length = 689

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 170 DVAGADEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|239980352|ref|ZP_04702876.1| cell division protein ftsH-like protein [Streptomyces albus J1074]
 gi|291452215|ref|ZP_06591605.1| cell division protein FtsH [Streptomyces albus J1074]
 gi|291355164|gb|EFE82066.1| cell division protein FtsH [Streptomyces albus J1074]
          Length = 669

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|254516624|ref|ZP_05128683.1| metalloprotease (cell division protein) FtsH [gamma proteobacterium
           NOR5-3]
 gi|219675047|gb|EED31414.1| metalloprotease (cell division protein) FtsH [gamma proteobacterium
           NOR5-3]
          Length = 640

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGVDEAKEDVQELVEFLRDPGKFQKLGGRI-----PRGVLMVGQPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 245


>gi|83859795|ref|ZP_00953315.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633]
 gi|83852154|gb|EAP90008.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633]
          Length = 643

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT  +R +A
Sbjct: 154 DDVAGIDEAKEELQEIVEFLKDPSKFQRLGGKI-----PKGALLVGPPGTGKTLTARAVA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 258


>gi|219669145|ref|YP_002459580.1| microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
 gi|219539405|gb|ACL21144.1| Microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
          Length = 493

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 21/224 (9%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
             I GQ  AK+ +  AL    +  +     +R     K ILL GP G GKT +++  AR 
Sbjct: 65  EDIGGQNAAKKELQEALDFLLYSERMRELGIR---PLKGILLSGPPGTGKTLLAKAAARY 121

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
             + ++ +  ++F E+ Y G   E++ R L   A    RES + E +++A I  +E  +D
Sbjct: 122 TDSVYLAISGSEFVEM-YAGVGAERV-RKLFKKA----RESAKKEKKDRAIIFIDE--MD 173

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            L  K  ++ +   + + L         ++++    S   +   +    +        L 
Sbjct: 174 ILGAKRGSNVSHHEYDQTLNQL-----LVEMDGLGNSEQGTQILLIAATNRAEALDPALL 228

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDR----LIDMDTVHRD 236
                    K      +     L     ++     +D++ + ++
Sbjct: 229 RPGRFDRLVKVDLPDKEGRLAILKIHTKNKPLASCVDLEQIAQE 272


>gi|218295295|ref|ZP_03496131.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
 gi|218244498|gb|EED11023.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
          Length = 283

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT I+R +A  A  PFI    + F
Sbjct: 171 IVEFLKNPGRFHEMGARI-----PKGVLLVGPPGVGKTHIARAVAGEARVPFITASGSDF 225

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 226 VEM-FVGVGAARV-RDLFETAKRH 247


>gi|182625999|ref|ZP_02953762.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
 gi|177908706|gb|EDT71217.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str.
           JGS1721]
          Length = 601

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 KDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPGTGKTLLAKAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|28199560|ref|NP_779874.1| ATP-dependent Clp protease subunit [Xylella fastidiosa Temecula1]
 gi|182682296|ref|YP_001830456.1| ATP-dependent chaperone ClpB [Xylella fastidiosa M23]
 gi|54035830|sp|Q87AX8|CLPB_XYLFT RecName: Full=Chaperone protein ClpB
 gi|28057675|gb|AAO29523.1| ATP-dependent Clp protease subunit [Xylella fastidiosa Temecula1]
 gi|182632406|gb|ACB93182.1| ATP-dependent chaperone ClpB [Xylella fastidiosa M23]
 gi|307578573|gb|ADN62542.1| ATP-dependent chaperone ClpB [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 861

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + ++L R ++GQ +A + V+ A+R      +    L D   P    L +GPTGVGKT + 
Sbjct: 562 MEADLGRRVVGQDEAIKVVSDAVR------RSRTGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|331006072|ref|ZP_08329408.1| ClpB protein [gamma proteobacterium IMCC1989]
 gi|330420109|gb|EGG94439.1| ClpB protein [gamma proteobacterium IMCC1989]
          Length = 887

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL R +IGQ+ A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 METELHRRVIGQEQAIVAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           + LA     +P   +++++++F E   V R V      +       + E+ R        
Sbjct: 616 KTLAEFLFDSPDAMVRLDMSEFMEKHAVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVLL 675

Query: 124 ----EQASINAEERILDAL-VGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L  G+   S  R V FR  +     +     I+    +    
Sbjct: 676 LDEIEKAHPDVFNILLQVLDDGRLTDSQGRTVDFRNTVIVMTSNLGSDAIQEIGQNRSFD 735

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           N         G    S+  +      +   ++ +V +   +  R E    ID   V
Sbjct: 736 NVSFDLPDLAGESTGSDGATDSANQHKYDAMKAAVMEVVVKHFRPEFINRIDEAVV 791


>gi|318042155|ref|ZP_07974111.1| cell division protein FtsH3 [Synechococcus sp. CB0101]
          Length = 626

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +      L+   R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKQELTEIVDFLKTPERYTAIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 258


>gi|261494532|ref|ZP_05991017.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309825|gb|EEY11043.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 647

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVGEVVEFLRDPTKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 211 EARVPFFTMAGSDFVEM-FVGVGASRV-RDLFDQAKKN 246


>gi|254428332|ref|ZP_05042039.1| ATP-dependent metallopeptidase HflB subfamily [Alcanivorax sp.
           DG881]
 gi|196194501|gb|EDX89460.1| ATP-dependent metallopeptidase HflB subfamily [Alcanivorax sp.
           DG881]
          Length = 637

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGVEEAKEEVQELVEFLRDPAKFQRLGGKI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|148828042|ref|YP_001292795.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719284|gb|ABR00412.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 856

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R R       A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIRRR------RAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|66827443|ref|XP_647076.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
 gi|60475264|gb|EAL73199.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4]
          Length = 720

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            ++G ++AK  +      LRN  +  +     R+ +MPK ILLVGP G GKT +++ LA 
Sbjct: 165 DVMGAEEAKGELQDLVDFLRNPEKYYR-----RNIVMPKGILLVGPPGTGKTLLAKSLAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A   FI +  ++F E  +VG   +++ R+L + A
Sbjct: 220 EARVSFITINGSEFEEA-FVGVGAKRV-RELFEAA 252


>gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C]
 gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C]
          Length = 677

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|254416851|ref|ZP_05030600.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176397|gb|EDX71412.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 628

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK  +   +   +N  R   + A +     PK +LLVGP G GKT +++ +A  
Sbjct: 167 VAGAEEAKTELVEIVEFLQNPDRFTAIGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 221

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 222 AEVPFFSISASEFVEL-FVGTGAARV-RDLFDQA 253


>gi|32490980|ref|NP_871234.1| hypothetical protein WGLp231 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166186|dbj|BAC24377.1| hflB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 638

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK  V+     L+   R Q+L   +     PK IL+VGP G
Sbjct: 145 LTEDQIKTTF-SDVAGCDEAKEEVSELVDYLKEPSRFQKLGGKI-----PKGILMVGPPG 198

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 199 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 243


>gi|240949043|ref|ZP_04753395.1| cell division protease FtsH-like protein [Actinobacillus minor
           NM305]
 gi|240296556|gb|EER47179.1| cell division protease FtsH-like protein [Actinobacillus minor
           NM305]
          Length = 643

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 160 DVAGCDEAKEEVGEVVDFLRDPSKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 215 EAKVPFFTMAGSDFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|159463438|ref|XP_001689949.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
 gi|158283937|gb|EDP09687.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii]
          Length = 752

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +N  + + L A +     PK  LLVGP G GKT +++  A
Sbjct: 286 KDVAGCDEAKVEIMEFVDFLKNPNKYKDLGAKI-----PKGALLVGPPGTGKTLLAKATA 340

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 341 GEAGVPFLSISGSDFMEM-FVGVGPARV-RDLFAQA 374


>gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740]
 gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes]
          Length = 648

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V   +   +N  R   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 186 DDMAGNDEAKDEVVEIVDFLKNPDRYLNLGAKI-----PKGVLLVGPPGTGKTLLAKAVA 240

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 241 GEASVPFFSVSGSSFIEM-FVGVGASRV-RDLFETA 274


>gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
          Length = 676

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 170 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|300867979|ref|ZP_07112618.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300334000|emb|CBN57796.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 612

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  ++     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGIEQAKLELSEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|299469796|emb|CBN76650.1| FtsH protease [Ectocarpus siliculosus]
          Length = 738

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G   AK     V   L+N  +  ++ A +     P+ ++L GP G GKT I+R +A  
Sbjct: 268 VAGCDSAKFELEEVVDFLKNPAKYTKVGAKI-----PRGVILEGPPGTGKTLIARAVAGE 322

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PFI    ++F E+ +VG    ++ RDL D A
Sbjct: 323 AGVPFIATSGSEFVEM-FVGVGAARV-RDLFDKA 354


>gi|317126811|ref|YP_004093093.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
 gi|315471759|gb|ADU28362.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM
           2522]
          Length = 680

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           + F  S  ++VSE       + + G  + K+ + + + +  +  +  A++   + PK +L
Sbjct: 148 MNFGKSKAKLVSEDKKKARFKDVAGADEEKQEL-VEVVDFLKDPRKFAEIGARI-PKGVL 205

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           LVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 259


>gi|255038784|ref|YP_003089405.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
 gi|254951540|gb|ACT96240.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM
           18053]
          Length = 685

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + +           +PK  LLVGP G GKT +++ +A  A
Sbjct: 197 NDVAGLDEAKEEIKEIVE--YLQSPDKFKKLGAKIPKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 255 GVPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDEIDAV 301


>gi|315498688|ref|YP_004087492.1| ATP-dependent metalloprotease ftsh [Asticcacaulis excentricus CB
           48]
 gi|315416700|gb|ADU13341.1| ATP-dependent metalloprotease FtsH [Asticcacaulis excentricus CB
           48]
          Length = 633

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  + Q+L   +     PK  LLVGP G GKT ++R +A 
Sbjct: 154 DVAGVDEAKEELQEVVDFLKDPTKFQKLGGKI-----PKGALLVGPPGTGKTMLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 EAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 257


>gi|205356716|ref|ZP_03223477.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345454|gb|EDZ32096.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 536

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 144 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 198

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 199 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 257

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 258 RGEMSNVER 266


>gi|123968339|ref|YP_001009197.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
 gi|123198449|gb|ABM70090.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. AS9601]
          Length = 637

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 103/269 (38%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLQEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++         +L+      + S  ++    +       L  +E+  L      
Sbjct: 355 GRLSILEVHARNKKLQEDLT------LESIARRTPGFTGADLANLL--NEAAILT--ARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +DSI + E       D  D+IVA   G+
Sbjct: 405 RKDSISISEID-----DSVDRIVAGMEGS 428


>gi|72382669|ref|YP_292024.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL2A]
 gi|72002519|gb|AAZ58321.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 624

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  ++ Q   D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKKPQRYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|24374168|ref|NP_718211.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           oneidensis MR-1]
 gi|24348675|gb|AAN55655.1|AE015704_6 ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           oneidensis MR-1]
          Length = 755

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   ++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIETLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLANCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|186682396|ref|YP_001865592.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186464848|gb|ACC80649.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 621

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +   R  Q+ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 170 DVAGVEEAKTELVEIVDFLKTPARFTQIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 225 EAGVPFFSISGSEFVEL-FVGVGSSRV-RDLFEQAKKQ 260


>gi|254796519|ref|YP_003081355.1| ATP-dependent chaperone ClpB [Neorickettsia risticii str. Illinois]
 gi|254589756|gb|ACT69118.1| ATP-dependent chaperone ClpB [Neorickettsia risticii str. Illinois]
          Length = 831

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  EL +++IGQ +A  AV+ A+    +R +  A ++D   P  + + +G TGVGKT +
Sbjct: 537 KIEDELKKHVIGQDEAVEAVSSAV----KRSR--AGVQDANRPLGSFMFLGSTGVGKTEL 590

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           S+ LA+         ++++++++ E   V R
Sbjct: 591 SKALAKFLFDDETALLRIDMSEYMEKHAVAR 621


>gi|169844635|ref|XP_001829038.1| hypothetical protein CC1G_01718 [Coprinopsis cinerea okayama7#130]
 gi|116509778|gb|EAU92673.1| hypothetical protein CC1G_01718 [Coprinopsis cinerea okayama7#130]
          Length = 782

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +    +  + PA        +P+  +L GP G GKT +++  A 
Sbjct: 281 KDVAGMDEAKVEIMEFV----KFLKDPAKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 336

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 337 EASVPFLSVSGSEFVEM-FVGVGSSRV-RDLFASAKKN 372


>gi|90412479|ref|ZP_01220482.1| putative cell division protein FtsH [Photobacterium profundum 3TCK]
 gi|90326516|gb|EAS42922.1| putative cell division protein FtsH [Photobacterium profundum 3TCK]
          Length = 663

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  ILLVGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 258


>gi|326798478|ref|YP_004316297.1| ATP-dependent metalloprotease FtsH [Sphingobacterium sp. 21]
 gi|326549242|gb|ADZ77627.1| ATP-dependent metalloprotease FtsH [Sphingobacterium sp. 21]
          Length = 707

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ V      LRN  +   L   +     PK  LLVG  G GKT +++ +A
Sbjct: 215 NDVAGLEEAKQEVMEIVDFLRNPKKYTNLGGKI-----PKGALLVGSPGTGKTLLAKAVA 269

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 270 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 303


>gi|315058448|gb|ADT72777.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3]
          Length = 538

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPEKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 260 RGEMSNVER 268


>gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22]
 gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei
           87.22]
          Length = 660

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGADEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 626

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
           + + G ++AK  +   +       + PA   +    +PK +LLVGP G GKT I+R +A 
Sbjct: 154 KDVAGCEEAKEELKEIV----EFLKAPARFHEMGARIPKGVLLVGPPGSGKTHIARAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PFI    + F E+ +VG    ++ RDL + A   
Sbjct: 210 EAKVPFIAASGSDFVEM-FVGVGAARV-RDLFETAKRH 245


>gi|171913969|ref|ZP_02929439.1| probable cell division protein FtsH [Verrucomicrobium spinosum DSM
           4136]
          Length = 701

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     +   L++  + Q+L   +     PK +L+VG  G GKT +++ +A
Sbjct: 213 KDVAGVEEAKEEVWELVEFLKDPKKFQRLGGKI-----PKGVLMVGSPGTGKTLLAKAIA 267

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 268 GEADVPFFSISGSDFVEM-FVGVGASRVRDMFEQGKKNAPCLIFIDEIDAV 317


>gi|149370159|ref|ZP_01890010.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
 gi|149356650|gb|EDM45206.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
          Length = 654

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT ++R +A
Sbjct: 203 KDVAGLEGAKEEVQEIVDFLKNPEKYTSLGGKI-----PKGALLVGPPGTGKTLLARAVA 257

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 258 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 291


>gi|50311345|ref|XP_455697.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644833|emb|CAG98405.1| KLLA0F13706p [Kluyveromyces lactis]
          Length = 842

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 92/258 (35%), Gaps = 42/258 (16%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK  +   +      +R+ R           +P+  +L GP G GKT +++ 
Sbjct: 337 KDVAGCDEAKEEIMEFVSFLKEPSRYERMGA-------KIPRGAILSGPPGTGKTLLAKA 389

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ 125
            A  AG PF  V  ++F E+ +VG    ++ RDL   A       I +       + R++
Sbjct: 390 TAGEAGVPFYSVSGSEFVEM-FVGVGASRV-RDLFKTARENAPAIIFVDEIDAIGKARQK 447

Query: 126 -----ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEV 169
                A+   E  +   LV              A +N  +V  + L      D+ I+I+ 
Sbjct: 448 GNFSGANDERENTLNQLLVEMDGFTTADHVVVLAGTNRPDVLDQALMRPGRFDRHINIDR 507

Query: 170 ADTSSDISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD- 225
            +       F +       +  + +L    + +        I     +      R++ D 
Sbjct: 508 PELQGRQEIFKVHLKKITLAGDMTDLQNRLAVMTPGFSGADIANVCNEAALIAARNDCDA 567

Query: 226 -RLIDMDTVHRDSIQMVE 242
            RL   +      I  VE
Sbjct: 568 VRLEHFEQAIERVIGGVE 585


>gi|298491770|ref|YP_003721947.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298233688|gb|ADI64824.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 628

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVG  G GKT +++ +A 
Sbjct: 173 EDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGSPGTGKTLLAKAIAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   D A  I+     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCIIFIDEIDAV 277


>gi|254362181|ref|ZP_04978297.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213]
 gi|261492458|ref|ZP_05989013.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|153093750|gb|EDN74693.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213]
 gi|261311874|gb|EEY13022.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 647

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK IL+VGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVGEVVEFLRDPTKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 211 EARVPFFTMAGSDFVEM-FVGVGASRV-RDLFDQAKKN 246


>gi|57237830|ref|YP_179078.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
 gi|57166634|gb|AAW35413.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221]
          Length = 538

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 259

Query: 125 QASINAEER 133
           +  ++  ER
Sbjct: 260 RGEMSNVER 268


>gi|327353808|gb|EGE82665.1| cell division protease ftsH [Ajellomyces dermatitidis ATCC 18188]
          Length = 804

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 341 DVHGCDEAKEELQELVEFLTNPERFNTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 395

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 396 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 428


>gi|261191725|ref|XP_002622270.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239589586|gb|EEQ72229.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239608671|gb|EEQ85658.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis
           ER-3]
          Length = 807

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 344 DVHGCDEAKEELQELVEFLTNPERFNTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 398

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 399 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 431


>gi|330830895|ref|YP_004393847.1| ATP-dependent metallopeptidase HflB [Aeromonas veronii B565]
 gi|328806031|gb|AEB51230.1| ATP-dependent metallopeptidase HflB [Aeromonas veronii B565]
          Length = 648

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVKELVDYLRDPSKFQKLGGKI-----PTGVLLVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 211 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 243


>gi|188996041|ref|YP_001930292.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931108|gb|ACD65738.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 625

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K   + +   L++  R Q+L         PK ILL G  GVGKT +++ +A
Sbjct: 146 DDVAGMDEVKEEVKELIEYLKDPSRYQKLGG-----RAPKGILLYGDPGVGKTLLAKAIA 200

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PFI +  + F E+ +VG    ++ RDL +     A  ++     D V  +A    
Sbjct: 201 GEANVPFISISGSDFVEM-FVGVGAARV-RDLFETAKKHAPCLIFIDEIDAV-GRARSGV 257

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G     + RE    +L          +  +   +++  +   P     G  
Sbjct: 258 ---------GFGGGHDEREQTLNQLLVELDGFDTNEGIIVIAATNRPDILDPALLRPGRF 308

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
           +      K    GR + +++ V K    L  D     +D+ T+ + +           ++
Sbjct: 309 DRQISVPKPDVKGRYEILKVHVNKKNIPLDED-----VDLMTIAKGTPGFSGADLANLIN 363

Query: 251 EFDKIVARDSGNGIGVSR 268
           E   + AR +   +G+  
Sbjct: 364 EAALLAARRNKEKVGMQE 381


>gi|187251727|ref|YP_001876209.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
 gi|186971887|gb|ACC98872.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
          Length = 631

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+N  + Q+L   L     PK +LL G  G GKT +++  A
Sbjct: 161 KDVAGCDEAKEELEDTITFLKNPKKFQKLGGKL-----PKGVLLYGAPGTGKTLLAKATA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG  F     ++F E+ +VG    ++ RDL D A  +
Sbjct: 216 GEAGVAFFSASASEFVEM-FVGVGASRV-RDLFDKAKKM 252


>gi|221134248|ref|ZP_03560553.1| ATP-dependent metalloprotease FtsH [Glaciecola sp. HTCC2999]
          Length = 645

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 160 DVAGCDEAKEDVSELVDFLRDPSKFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 215 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 263


>gi|226958690|ref|NP_001101926.2| AFG3(ATPase family gene 3)-like 1 [Rattus norvegicus]
          Length = 789

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 301 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAK 358

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 359 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 410

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             L G++   NT     + L + +  +   ++ V   ++     D 
Sbjct: 411 GHLGGQSEQENTLN---QMLVEMDGFNSTTNVVVLAGTNRPDILDP 453


>gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 612

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 21  IGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            G+ +AK  +      L +  + + + A +     PK ILLVGP G GKT +++ +A  +
Sbjct: 170 AGEDEAKENLQEIVDYLHDPGKYESIGASM-----PKGILLVGPPGTGKTMLAKAVAGES 224

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PF  +  ++F E+ +VG     V  + R   + A  IV     D + ++
Sbjct: 225 NVPFFSISGSEFVEM-FVGMGASKVRDLFRQAKEKAPCIVFIDEIDAIGQK 274


>gi|301631403|ref|XP_002944787.1| PREDICTED: cell division protease ftsH-like [Xenopus (Silurana)
           tropicalis]
          Length = 625

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 148 DVAGCDEAKEEVKEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAG 202

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 203 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKN 238


>gi|257062871|ref|YP_003142543.1| ATP-dependent chaperone ClpB [Slackia heliotrinireducens DSM 20476]
 gi|256790524|gb|ACV21194.1| ATP-dependent chaperone ClpB [Slackia heliotrinireducens DSM 20476]
          Length = 891

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 39/259 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ ++L   ++GQ +A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 566 DLEAKLHERVVGQDEAVSAVAGAI-----RRNRAGLSDPDRPIGSFLFLGPTGVGKTELA 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          ++++++++ E            GYVG +       L +        
Sbjct: 621 KALAEYLFDTERAMVRIDMSEYMEKFSVQRLIGAPPGYVGYD---EGGQLTEAVRRRPYT 677

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T             G + + +  I +  ++   
Sbjct: 678 VILLDEIEKAHPDVFNILLQVLDDGRLTDG----------QGRVVNFKNAIIIMTSNVGS 727

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKK------KIRMSVQKCYPELMRDESDRLIDM 230
            +    G           +   +M    +K       ++  V        R E    ID 
Sbjct: 728 QSIRDYGTQRQQQQQSGNMMEDMMSGDIEKLAQSMADLQTKVNDALRNTFRPEFLNRID- 786

Query: 231 DTVHRDSIQMVENYGIVFL 249
           + +  +++   E   IV L
Sbjct: 787 EIITFNALTSKEIEPIVGL 805


>gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 608

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +  +L A +     PK +LLVGP G GKT ++R +A
Sbjct: 158 NDVAGADEEKEELQEIVEFLKYPKKFIELGARI-----PKGVLLVGPPGTGKTLLARAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQAKKN 249


>gi|145238254|ref|XP_001391774.1| respiratory chain complexes assembly protein rca1 [Aspergillus
           niger CBS 513.88]
 gi|134076257|emb|CAK39542.1| unnamed protein product [Aspergillus niger]
          Length = 898

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 99/270 (36%), Gaps = 38/270 (14%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +N  R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 417 DVAGMDEAKVEIMEFVSFLKNPERFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 471

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQASINA 130
            +G PF  V  ++F E+ +VG    ++ RDL   A      I+     D + + +A  N 
Sbjct: 472 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANARKSTPCIIFIDEIDAIGKSRAKSNY 529

Query: 131 ----EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
               +ER      IL  + G   +         N  +V  + L      D+ I I+    
Sbjct: 530 GGGNDERESTLNQILTEMDGFNTSEQVVVLAGTNRPDVLDQALMRPGRFDRHISIDRPTM 589

Query: 173 SSDISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RL 227
                 F +          +  L    S +        I   V +      R+ +D   +
Sbjct: 590 DGRKQIFGVHLKKIVTKEDMEYLQGRLSALTPGFAGADIANCVNEAALVAARENADHVTM 649

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
              +      I  +E   +V   E  ++VA
Sbjct: 650 KHFEQAIERVIGGLEKKSLVLSPEEKRVVA 679


>gi|116871603|ref|YP_848384.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740481|emb|CAK19601.1| cell division ATP-dependent metalloprotease FtsH [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 691

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 181 DVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 239 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 271


>gi|313206718|ref|YP_004045895.1| ATP-dependent metalloprotease ftsh [Riemerella anatipestifer DSM
           15868]
 gi|312446034|gb|ADQ82389.1| ATP-dependent metalloprotease FtsH [Riemerella anatipestifer DSM
           15868]
 gi|315023788|gb|EFT36790.1| Cell division protein ftsH [Riemerella anatipestifer RA-YM]
 gi|325335842|gb|ADZ12116.1| ATP-dependent Zn protease [Riemerella anatipestifer RA-GD]
          Length = 658

 Score = 63.4 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           ++ V    + + G + AK  V      L+N  +  +L   +     PK +LLVGP G GK
Sbjct: 178 KDKVQVTFKDVAGLEGAKEEVQEVVDFLKNAEKYTKLGGKI-----PKGVLLVGPPGTGK 232

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 233 TLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFAQA 274


>gi|329113826|ref|ZP_08242597.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
 gi|326696836|gb|EGE48506.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
          Length = 645

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   L++  +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKGELQEIVDFLKDPQKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 GEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKKSAPCIIFIDEIDAV 260


>gi|319953847|ref|YP_004165114.1| ATP-dependent metalloprotease ftsh [Cellulophaga algicola DSM
           14237]
 gi|319422507|gb|ADV49616.1| ATP-dependent metalloprotease FtsH [Cellulophaga algicola DSM
           14237]
          Length = 666

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      LRN  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLEGAKEEVEEIVDFLRNPDKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 251 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 284


>gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14]
 gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14]
          Length = 668

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGADEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|220930935|ref|YP_002507843.1| ATPase AAA-2 domain protein [Halothermothrix orenii H 168]
 gi|219992245|gb|ACL68848.1| ATPase AAA-2 domain protein [Halothermothrix orenii H 168]
          Length = 806

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDEAIQAVSQAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          ++++++++ E   V R V  
Sbjct: 556 RALAEAMFNDEETMVRIDMSEYMEKHAVSRLVGS 589


>gi|203284683|ref|YP_002222423.1| cell division protein [Borrelia duttonii Ly]
 gi|203288216|ref|YP_002223231.1| cell division protein [Borrelia recurrentis A1]
 gi|201084126|gb|ACH93717.1| cell division protein [Borrelia duttonii Ly]
 gi|201085436|gb|ACH95010.1| cell division protein [Borrelia recurrentis A1]
          Length = 636

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++AK+ +      L+   + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 173 KDVAGQEEAKQELGEVVEFLKYPKKFEKIGARI-----PKGVLLVGSPGTGKTLLAKAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 228 GEAGVNFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 261


>gi|145589196|ref|YP_001155793.1| ATP-dependent metalloprotease FtsH [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047602|gb|ABP34229.1| membrane protease FtsH catalytic subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 621

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 151 DVAGCDEAKEEVFELVDFLKDPQKFQKLGGRI-----PHGVLLVGPPGTGKTLLAKAIAG 205

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 206 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFENAKKN 241


>gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
 gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
          Length = 657

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L++  +   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 159 KDVAGADEEKQELVEVVEFLKDPRKFSAIGARI-----PKGVLLVGPPGTGKTLLARAVA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 250


>gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus]
          Length = 679

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L++  +   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 166 KDVAGADEEKQELVEVVEFLKDPRKFSAIGARI-----PKGVLLVGPPGTGKTLLARAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 257


>gi|317010654|gb|ADU84401.1| cell division protein [Helicobacter pylori SouthAfrica7]
          Length = 632

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +     A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPDRYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|291276455|ref|YP_003516227.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
 gi|290963649|emb|CBG39481.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198]
          Length = 631

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 18/232 (7%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A +  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 174 AGNEEAKEEVVEIV-DFLKYPERYASIGAKI-PKGVLLVGPPGTGKTLLAKAVAGEANVP 231

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-RRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL ++A          DE+       A      A  
Sbjct: 232 FFSMSGSSFIEM-FVGLGASRV-RDLFEMAKKEAPSMIFIDEIDAIGKSRA------AGG 283

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 284 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEVLDPALLRPGRFDRQVLVDKP 343

Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
             +GR + +++ ++         +  + +D+  + + +  +        ++E
Sbjct: 344 DFNGRIEILKVHIK-------SVKLAKDVDLQEIAKLTAGLAGADLANIINE 388


>gi|261252481|ref|ZP_05945054.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           orientalis CIP 102891]
 gi|260935872|gb|EEX91861.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           orientalis CIP 102891]
          Length = 756

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++             D     + L  GPTG
Sbjct: 447 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK-----LTRAGLGADHKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|168187052|ref|ZP_02621687.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169295060|gb|EDS77193.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 657

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 163 KDVAGADEEKGELEEIVDFLKEPKKYLDMGARI-----PKGILLVGPPGTGKTLLAKAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 218 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 254


>gi|163841941|ref|YP_001626346.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
 gi|162955417|gb|ABY24932.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
          Length = 704

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A
Sbjct: 166 NDVAGADEAVEELHEIKEFLQEPQKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 221 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|163802297|ref|ZP_02196191.1| cell division protein FtsH [Vibrio sp. AND4]
 gi|159173826|gb|EDP58640.1| cell division protein FtsH [Vibrio sp. AND4]
          Length = 658

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 257


>gi|118443161|ref|YP_877130.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
 gi|310943127|sp|A0PXM8|FTSH_CLONN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|118133617|gb|ABK60661.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT]
          Length = 676

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 168 KDVAGADEEKGELEEIVDFLKEPKKYLDMGARI-----PKGILLVGPPGTGKTLLAKAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 223 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 259


>gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680]
 gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis
           MA-4680]
          Length = 664

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|70989107|ref|XP_749403.1| mitochondrial inner membrane AAA protease Yta12 [Aspergillus
           fumigatus Af293]
 gi|66847034|gb|EAL87365.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus fumigatus Af293]
          Length = 885

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 31/175 (17%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 405 DVAGMDEAKVEIMEFVSFLKTPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 459

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            +G PF  V  ++F E+ +VG     V  +  +    A  I+     D + + +A     
Sbjct: 460 ESGVPFFSVSGSEFVEM-FVGVGPSRVRDLFANARKNAPCIIFIDEIDAIGKSRAKQGFS 518

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
                  +   +IL  + G   T         N  +V  K L      D+ I I+
Sbjct: 519 GGNDERESTLNQILTEMDGFNTTEQVVVLAGTNRPDVLDKALMRPGRFDRHITID 573


>gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA1]
 gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA2]
 gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL092PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L+   +   L A +     PK +LL GP G GKT +++ +A
Sbjct: 223 DDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKI-----PKGVLLTGPPGTGKTLLAKAIA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 278 GEAGVPFFSLSGSEFIEM-FVGVGASRV-RDLFNRA 311


>gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4]
 gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           pseudofirmus OF4]
          Length = 679

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L++  +   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 166 KDVAGADEEKQELVEVVEFLKDPRKFSAIGARI-----PKGVLLVGPPGTGKTLLARAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 257


>gi|255713350|ref|XP_002552957.1| KLTH0D05412p [Lachancea thermotolerans]
 gi|238934337|emb|CAR22519.1| KLTH0D05412p [Lachancea thermotolerans]
          Length = 813

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT I++  A
Sbjct: 343 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAQI-----PRGAILSGPPGTGKTLIAKATA 397

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQA- 126
             AG PF  V  ++F E+ +VG    ++ RDL   A       + +       + R++  
Sbjct: 398 GEAGVPFFSVSGSEFVEM-FVGVGASRV-RDLFKTARENAPSIVFVDEIDAIGKARQKGN 455

Query: 127 -------SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVAD 171
                    N   ++L  + G T +        +N  +V  + L      D+ I+I+  +
Sbjct: 456 FSGANDERENTLNQLLVEMDGFTPSDHVVVLAGTNRPDVLDQALMRPGRFDRHINIDRPE 515

Query: 172 TSSDISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--R 226
                  F +       +  + +L    + +        I     +      R+E    +
Sbjct: 516 LEGRKQIFQVHLAKVKLAGSMEDLKNRLAALTPGFSGADISNVCNEAALTAARNECTSVK 575

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  KIVA
Sbjct: 576 LEHFEQAIERVIGGVERKSKLLSPEEKKIVA 606


>gi|224823865|ref|ZP_03696974.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
 gi|224604320|gb|EEG10494.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002]
          Length = 636

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   + +   LR+  R Q L   +     P+ ILL G  G GKT +++ +A
Sbjct: 159 QDVAGCDEAKEEVKEIVDYLRDPSRYQSLGGRI-----PRGILLCGSPGTGKTLLAKAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 214 GEAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKN 250


>gi|119498159|ref|XP_001265837.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Neosartorya fischeri NRRL 181]
 gi|119414001|gb|EAW23940.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Neosartorya fischeri NRRL 181]
          Length = 885

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 101/285 (35%), Gaps = 37/285 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 405 DVAGMDEAKVEIMEFVSFLKTPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 459

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            +G PF  V  ++F E+ +VG    ++ RDL   A            R+ A        +
Sbjct: 460 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA------------RKNAPCIIFIDEI 505

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           DA+      S  ++ F     + E +  +I  E+   ++      + G     +L+ + +
Sbjct: 506 DAI----GKSRAKQSFGGGNDERESTLNQILTEMDGFNTTEQVVVLAGTNRPDVLDKALM 561

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---DMDTVHRDSIQMVENYGIVFLDEF 252
                             +   ++ R    +++   DMD +  +        G    D  
Sbjct: 562 RPGRFDRHIAIDRPTM--EGRKQIFRVHLKKIVTKEDMDYL--EGRLAALTPGFAGAD-- 615

Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297
             I    +   +  +RE  +   +   E +      G      +L
Sbjct: 616 --IANCVNEAALVAARENAESITMKHFEQAIERVVGGLEKKSLVL 658


>gi|50085895|ref|YP_047405.1| cell division protein [Acinetobacter sp. ADP1]
 gi|49531871|emb|CAG69583.1| cell division protein [Acinetobacter sp. ADP1]
          Length = 631

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A
Sbjct: 157 KDVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|327289247|ref|XP_003229336.1| PREDICTED: AFG3-like protein 1-like [Anolis carolinensis]
          Length = 722

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  +   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 227 KDVAGCEEAKLEILEFV-NFLKNPKQYQELGAKI-PKGAMLTGPPGTGKTLLAKATAGEA 284

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 285 NVPFITVNGSEFLEM-FVGVGPARVRDMFALARKNAPCILFIDEIDAVGRK 334


>gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA4]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|304310500|ref|YP_003810098.1| Cell division protein FtsH [gamma proteobacterium HdN1]
 gi|301796233|emb|CBL44441.1| Cell division protein FtsH [gamma proteobacterium HdN1]
          Length = 644

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVKEIVEFLRDPSKFQRLGGKI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFHISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 245


>gi|254514304|ref|ZP_05126365.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium NOR5-3]
 gi|219676547|gb|EED32912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium NOR5-3]
          Length = 765

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ S L   + GQ DA  ++A +++              +    + LL GPTGVGKT +
Sbjct: 454 QKLESNLKMVVFGQDDAVTSLATSIK-----MARAGLRGGDKPIGSFLLAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +R+LA++ G   I+ +++++ E            GYVG +   +   L D A        
Sbjct: 509 TRQLAKILGLELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAATKHPHAVV 565

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
             +  E+A       +L  +   T T N 
Sbjct: 566 LLDEIEKAHPEVFNLLLQVMDHGTLTDNN 594


>gi|198443066|pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh
 gi|198443067|pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh
 gi|198443069|pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443070|pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443071|pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443072|pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
 gi|198443073|pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
           Protease, Ftsh Adp Complex
          Length = 268

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 11  KDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEA 68

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL + A          DE+       A      
Sbjct: 69  HVPFFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------ 120

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A    +      +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 121 AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K   +GR + +++ ++
Sbjct: 181 DKPDFNGRVEILKVHIK 197


>gi|159128818|gb|EDP53932.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus fumigatus A1163]
          Length = 885

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 31/175 (17%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 405 DVAGMDEAKVEIMEFVSFLKTPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 459

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            +G PF  V  ++F E+ +VG     V  +  +    A  I+     D + + +A     
Sbjct: 460 ESGVPFFSVSGSEFVEM-FVGVGPSRVRDLFANARKNAPCIIFIDEIDAIGKSRAKQSFS 518

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
                  +   +IL  + G   T         N  +V  K L      D+ I I+
Sbjct: 519 GGNDERESTLNQILTEMDGFNTTEQVVVLAGTNRPDVLDKALMRPGRFDRHITID 573


>gi|161522900|ref|YP_001585829.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189348269|ref|YP_001941465.1| cell division protease [Burkholderia multivorans ATCC 17616]
 gi|160346453|gb|ABX19537.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC
           17616]
 gi|189338407|dbj|BAG47475.1| cell division protease [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|222053541|ref|YP_002535903.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221562830|gb|ACM18802.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 586

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LR+  +  +L   +        ILLVGP G GKT ++R +A 
Sbjct: 147 DVAGADEAKSDLLETVEFLRDPGKFSRLGGKM-----LTGILLVGPPGTGKTLLARAVAG 201

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            AG PF  +  ++F E+ YVG     V  +       A  I+     D V  +
Sbjct: 202 EAGVPFFSMSGSEFVEM-YVGVGSSRVRDLFAQGHKAAPCIIFIDELDAVGRK 253


>gi|33861820|ref|NP_893381.1| cell division protein FtsH3 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640188|emb|CAE19723.1| cell division protein FtsH3 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 620

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A
Sbjct: 170 EDVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 228 EVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga]
 gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva]
          Length = 806

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
           + I+G  +AK  V   +    +  + P   +     +PK ILLVGP G GKT +++ +A 
Sbjct: 231 KDILGIDEAKEDVQEIV----KFIKQPFLYKKVGAKVPKGILLVGPPGTGKTMLAKAVAT 286

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQ 125
             G PFI     +F EI YVG+  ++I         +A  I+     D V  +
Sbjct: 287 ETGIPFIYTSGPEFVEI-YVGQGAQRIRALFHKARKIAPCIIFIDEIDAVGSK 338


>gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA1]
 gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA1]
 gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA1]
 gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA3]
 gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL067PA1]
 gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA1]
 gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA2]
 gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA3]
 gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA2]
 gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA1]
 gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|295397832|ref|ZP_06807896.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
 gi|294973929|gb|EFG49692.1| cell division protein FtsH [Aerococcus viridans ATCC 11563]
          Length = 721

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + Q L A +     PK +LL GP G GKT +++ +A 
Sbjct: 201 DVAGADEEKQELVEVVDFLKDPRKFQALGARI-----PKGVLLEGPPGTGKTLLAKAVAG 255

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 256 EAGVPFYSISGSEFVEM-FVGVGASRV-RDLFENA 288


>gi|289433575|ref|YP_003463447.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169819|emb|CBH26357.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 691

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 182 DVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 239

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 240 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 272


>gi|217031605|ref|ZP_03437110.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128]
 gi|216946805|gb|EEC25401.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128]
          Length = 603

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 141 NDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEA 198

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL + A          DE+       A      
Sbjct: 199 HVPFFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------ 250

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A    +      +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 251 AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 310

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K   +GR + +++ ++
Sbjct: 311 DKPDFNGRVEILKVHIK 327


>gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137]
 gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|88608018|ref|YP_506019.1| ClpB protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600187|gb|ABD45655.1| ClpB protein [Neorickettsia sennetsu str. Miyayama]
          Length = 854

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  EL +++IGQ +A  AV+ A+    +R +  A ++D   P  + + +G TGVGKT +
Sbjct: 560 KIEDELKKHVIGQDEAVEAVSSAV----KRSR--AGVQDANRPLGSFMFLGSTGVGKTEL 613

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           S+ LA+         ++++++++ E   V R
Sbjct: 614 SKALAKFLFDNETALLRIDMSEYMEKHAVAR 644


>gi|242309929|ref|ZP_04809084.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT
           98-5489]
 gi|239523226|gb|EEQ63092.1| endopeptidase clp ATP-binding chain a [Helicobacter pullorum MIT
           98-5489]
          Length = 737

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 108/283 (38%), Gaps = 37/283 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   I GQ  A   +  AL    +R +   +  +     + L  GP+GVGKT +
Sbjct: 436 KNLQKHLQSRIFGQDLAITEIVTAL----KRNKAGLNAPN-KPIGSFLFSGPSGVGKTEL 490

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           ++ +A+  G  F +++++++ E            GYVG +   I+ +++    + +    
Sbjct: 491 AKEIAKALGINFERIDMSEYMEKYSISGLIGAPAGYVGYDKGGILTEMIKKNPHTLL--L 548

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +     L  +     T N          +GE +D    I +  ++     
Sbjct: 549 LDEI-EKAHPDVLNLFLQVMDNAKLTDN----------NGESADFSSVILIMTSNVGSKE 597

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
               G                     + ++   +   +  L + E  +++D +   +D  
Sbjct: 598 APTLGFTQDSNSKFQSAIKDSFSPEFRNRLDAII--AFNPLNKQEILKIVDKN--IQDLN 653

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSRE-GVQRDLLPLVE 280
           Q + N  I  +   DK   ++    IG ++E G +   L + E
Sbjct: 654 QQIANKNIEVI--LDKTA-KEYLAQIGFNQELGARPLALKIQE 693


>gi|39972279|ref|XP_367530.1| hypothetical protein MGG_07441 [Magnaporthe oryzae 70-15]
 gi|145016627|gb|EDK01057.1| hypothetical protein MGG_07441 [Magnaporthe oryzae 70-15]
          Length = 1009

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 38/261 (14%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   +  +L A +     P+  +L GP G GKT +++  A 
Sbjct: 513 DVAGADEAKLEIVEFVSFLKTPEKFVRLGAKI-----PRGAILSGPPGTGKTLLAKATAG 567

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQA-- 126
            +G PF  V  ++F E+ +VG    ++ RDL   A       I I       + R+    
Sbjct: 568 ESGVPFFSVSGSEFVEM-FVGVGASRV-RDLFKEARKHAPCIIFIDEIDAIGKARDSGAR 625

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       +IL  + G  +          N  E+  K L      D+ I I+    
Sbjct: 626 FGGNDEREATLNQILTEMDGFNSNEQVVVLAGTNRPEILDKALMRPGRFDRHIHIDRPTM 685

Query: 173 SSDISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RL 227
                 F +             L    S +        I   V +      RD +D   +
Sbjct: 686 KGRADIFKVHLARILTKEDFEYLCGRLSALTPGFAGADIANVVNEAALVAARDNADSVTM 745

Query: 228 IDMDTVHRDSIQMVENYGIVF 248
           +  +      I  +E   +V 
Sbjct: 746 VHFERAIERVIGGLERKSLVL 766


>gi|83816138|ref|YP_445932.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294507843|ref|YP_003571901.1| cell division protein [Salinibacter ruber M8]
 gi|310943098|sp|D5HA94|FTSH2_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|83757532|gb|ABC45645.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294344171|emb|CBH24949.1| cell division protein [Salinibacter ruber M8]
          Length = 683

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 34/227 (14%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK  +      L+N  +R +         +PK +LLVGP G GKT ++R +A
Sbjct: 188 DDVAGADSAKEELREIIKFLKNP-KRFEGLGG----KVPKGVLLVGPPGTGKTLLARAVA 242

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A APF  V  + F E+ +VG    ++ RD+   A               A I  +E  
Sbjct: 243 GEANAPFFSVSGSDFMEM-FVGVGASRV-RDMFSEAKETSP----------AIIFIDE-- 288

Query: 135 LDAL-----VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
           LD++      G    ++ RE    +L       +E +  +   +++  +         G 
Sbjct: 289 LDSIGRKRGAGLGGGNDEREQTLNQLLSELDGFEENEGVIVMAATNRPDILDSALTRPGR 348

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            +            R + +++  ++    L  D     +D++ + R 
Sbjct: 349 FDRQITVDLPTKQSRHEILKIHARE--KPLSDD-----VDLEEIARS 388


>gi|268564500|ref|XP_002639128.1| C. briggsae CBR-SPG-7 protein [Caenorhabditis briggsae]
          Length = 779

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 293 DVAGCEEAKIEIMEFV-NFLKNPQQYKDLGAKI-PKGAILTGPPGTGKTLLAKATAGEAN 350

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PFI V  ++F E+ +VG     V  +       +  I+     D V
Sbjct: 351 VPFITVSGSEFLEM-FVGVGPARVRDMFSMARKNSPCILFIDEIDAV 396


>gi|114320603|ref|YP_742286.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226997|gb|ABI56796.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 756

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 29/250 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   I GQ +A   +A  ++            + E    + L  GPTGVGKT +SR
Sbjct: 456 LEKDLKGLIFGQDEAIDTLASTIK-----LSRAGLGQPEKPVGSFLFSGPTGVGKTEVSR 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           RLA L G   I+ +++++ E            GYVG +   +   L +  I         
Sbjct: 511 RLAELMGVKLIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGL---LTEEVIKHPHSVVLL 567

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R+ +  +  + +     + D+S   
Sbjct: 568 DELEKAHPDVFNLLLQVMDHGTLTDNNG-------READFRNVILIMTTNAGAEDMSRRS 620

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +  E   +      + ++   VQ  +  L  D   R++D   V   S+Q+
Sbjct: 621 IGFMPQDHSSDGLEAIKRQFTPEFRNRLDAVVQ--FNPLDEDNVQRVVDK-FVRELSVQL 677

Query: 241 VENYGIVFLD 250
            E    + +D
Sbjct: 678 AEKRVTLMVD 687


>gi|325273421|ref|ZP_08139674.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           sp. TJI-51]
 gi|324101448|gb|EGB99041.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           sp. TJI-51]
          Length = 447

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 139 SDKELLRNLERDLKLTVFGQDQAIDSLSTAIK-----LSRAGLKAPDKPVGSFLFAGPTG 193

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 194 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 253

Query: 113 I 113
            
Sbjct: 254 C 254


>gi|319938337|ref|ZP_08012733.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1]
 gi|319806520|gb|EFW03182.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1]
          Length = 574

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 21/117 (17%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRN--RWRRQQLPADLRDELMPKNILL 58
           M LT +FS + +  ++ + IIGQ  A   +  +L +  ++   Q P+ +         LL
Sbjct: 317 MSLTTSFSYQNLEEQMKQEIIGQDKAIHTIVESLESLSQYPHPQKPSGI--------YLL 368

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIR 104
           VG +G+GKT  ++ LA+L    F+K+++++++E            GYVG +    + 
Sbjct: 369 VGGSGIGKTQTAKSLAKLLNRNFVKLDMSEYSEPSSVSKIIGSPPGYVGYDDHSSVL 425


>gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA1]
 gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA2]
 gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA1]
 gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA3]
 gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA2]
 gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA2]
 gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA2]
 gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA3]
 gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA3]
 gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA1]
 gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3]
 gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA2]
 gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL074PA1]
 gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA1]
 gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL020PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|238757596|ref|ZP_04618780.1| hypothetical protein yaldo0001_19170 [Yersinia aldovae ATCC 35236]
 gi|238704101|gb|EEP96634.1| hypothetical protein yaldo0001_19170 [Yersinia aldovae ATCC 35236]
          Length = 747

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + S L+  + GQ  A  A++ A++             D     + L  GPTGVGKT +
Sbjct: 438 RNLSSRLNMLVFGQDKAIDALSEAIK-----MSRAGLGHDHKPVGSFLFAGPTGVGKTEV 492

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 493 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 546


>gi|40806173|ref|NP_955399.1| paraplegin isoform 2 [Homo sapiens]
          Length = 489

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|229816832|ref|ZP_04447114.1| hypothetical protein BIFANG_02080 [Bifidobacterium angulatum DSM
           20098]
 gi|229785848|gb|EEP21962.1| hypothetical protein BIFANG_02080 [Bifidobacterium angulatum DSM
           20098]
          Length = 910

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 590 MEDYLGKRVIGQKEAIKAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 644

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 645 ALADFLFDDEKAMVRIDMSEYMEKASVSR 673


>gi|242769231|ref|XP_002341728.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
 gi|218724924|gb|EED24341.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC
           10500]
          Length = 807

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 341 DVHGCDEAKDELQELVEFLLNPDRFSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 395

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ RDL   A                 ++R+E   
Sbjct: 396 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFAQARAKAPAIIFIDELDAIGAKRNERDA 453

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+ + + + D    +
Sbjct: 454 AYVKQTLNQLLTELDGFSQTSGVIILAATNYPQLLDKALTRPGRFDRRVVVGLPDVRGRM 513

Query: 177 SNF 179
              
Sbjct: 514 DIL 516


>gi|217033329|ref|ZP_03438760.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10]
 gi|216944270|gb|EEC23695.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10]
          Length = 632

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 282

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIILAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|121533361|ref|ZP_01665189.1| Vesicle-fusing ATPase [Thermosinus carboxydivorans Nor1]
 gi|121307920|gb|EAX48834.1| Vesicle-fusing ATPase [Thermosinus carboxydivorans Nor1]
          Length = 498

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+ +  AL +  +  +    L      K ILL GP G GKT +++  A+  
Sbjct: 67  EDIGGQEVAKKELREAL-DFIKDVERIKSLGI-RPIKGILLSGPPGTGKTLLAKAAAKYM 124

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + FI    ++F E+ YVG   +++ R L   A    R     + +  A I  +E  ++ 
Sbjct: 125 DSVFIAASGSEFVEM-YVGVGAQRV-RQLFKQA----RTLAMRQGKTSAVIFIDE--IEV 176

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L GK          R +       D+ ++ E+      +S+ D      +G  N  ++  
Sbjct: 177 LGGK----------RGQHHGHLEYDQTLN-ELLVQMDGLSSDDDVRLLVIGATNRLDILD 225

Query: 198 KVMGSGRKKKIRMSV 212
             +    +   ++ V
Sbjct: 226 PALLRPGRFDRQVKV 240


>gi|94501391|ref|ZP_01307911.1| cell division protein FtsH [Oceanobacter sp. RED65]
 gi|94426504|gb|EAT11492.1| cell division protein FtsH [Oceanobacter sp. RED65]
          Length = 644

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVQELVEFLRDPAKYQRLGGQI-----PRGVLMVGQPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 209 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 244


>gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA2]
 gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA1]
 gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA2]
 gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL007PA1]
 gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL056PA1]
 gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL086PA1]
 gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA1]
 gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA1]
 gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL045PA1]
 gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA1]
 gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL078PA1]
 gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL038PA1]
 gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA1]
 gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA2]
 gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2]
 gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA1]
 gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA2]
 gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|32475713|ref|NP_868707.1| ClpB protein [Rhodopirellula baltica SH 1]
 gi|32446255|emb|CAD76084.1| ClpB protein [Rhodopirellula baltica SH 1]
          Length = 899

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 103/314 (32%), Gaps = 40/314 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AV+ A+R      +  + L+D   P  + L +GPTGVGKT + 
Sbjct: 603 MEERLHQRVVGQDEAVTAVSDAVR------RSRSGLQDPNRPIGSFLFLGPTGVGKTELC 656

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA +     +  +++++++F E            GYVG    +    L +        
Sbjct: 657 KALAEVMFDDESAMVRIDMSEFMERHSVSRLIGAPPGYVGY---EEGGKLTEAVRRRPYA 713

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T         + R    ++  + +     S  I
Sbjct: 714 VILLDEMEKAHPDVFNVLLQVLDDGRLTDG-------QGRTVNFTNTVVVMTSNVGSQVI 766

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                 GG    +    E   K                 +  L + +  R++ +      
Sbjct: 767 QRVTEEGGGEDEMRQAVEDALKARFLPEFLNRIDDTV-IFHPLQQTQIRRIVQLQLEELR 825

Query: 237 SIQMVENYGIVFLD-EFDKIVARDSGNGIGV-------SREGVQRDLLPLVEGSSVSTKY 288
           S            D   D+I         G         RE        +++ S      
Sbjct: 826 SRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTT 885

Query: 289 GSINTDHILFIASG 302
             I+ D   F+ SG
Sbjct: 886 IKIDHDGDQFVFSG 899



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 125/361 (34%), Gaps = 71/361 (19%)

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV---------FRKKLRDG 158
           D A     E   ++ R       EE I + +   T    TR +           ++L   
Sbjct: 551 DSADQTKEEPGDEKRRLLRKEVTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQR 610

Query: 159 EISDKEIDIEVAD-----------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
            +   E    V+D            +  I +F   G   VG   L +  ++VM       
Sbjct: 611 VVGQDEAVTAVSDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAM 670

Query: 208 IRMSVQKCYPE-------------LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
           +R+ + +                 +  +E  +L        ++++    Y ++ LDE +K
Sbjct: 671 VRIDMSEFMERHSVSRLIGAPPGYVGYEEGGKL-------TEAVRR-RPYAVILLDEMEK 722

Query: 255 ---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS--GA 303
                    +   D G         V      +V  S+V ++     T+          A
Sbjct: 723 AHPDVFNVLLQVLDDGRLTDGQGRTVNFTNTVVVMTSNVGSQVIQRVTEEGGGEDEMRQA 782

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL---MKTEGIIL 360
              +  A  LPE   R    V    L ++  R I+        LQ +EL   +   G+  
Sbjct: 783 VEDALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQ-------LQLEELRSRLAANGLSF 835

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA----SDLQEKTVVIDA 416
           + T+ +ID +A+V  +        GAR L+ V++R +++   SA    S  +  T+ ID 
Sbjct: 836 EITDAAIDQIAEVGYD-----PAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDH 890

Query: 417 E 417
           +
Sbjct: 891 D 891


>gi|71276549|ref|ZP_00652823.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Dixon]
 gi|71901099|ref|ZP_00683207.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
 gi|170730931|ref|YP_001776364.1| ATP-dependent Clp protease subunit [Xylella fastidiosa M12]
 gi|71162620|gb|EAO12348.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Dixon]
 gi|71729142|gb|EAO31265.1| AAA ATPase, central region:Clp, N terminal [Xylella fastidiosa
           Ann-1]
 gi|167965724|gb|ACA12734.1| ATP-dependent Clp protease subunit [Xylella fastidiosa M12]
          Length = 861

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + ++L R ++GQ++A + V+ A+R      +    L D   P    L +GPTGVGKT + 
Sbjct: 562 MEADLGRRVVGQEEAIKVVSDAVR------RSRTGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
 gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
          Length = 669

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 162 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 249


>gi|300868425|ref|ZP_07113046.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
 gi|300333559|emb|CBN58234.1| FtsH peptidase [Oscillatoria sp. PCC 6506]
          Length = 628

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + +   +
Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKE 263

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 264 NAPCIIFIDEIDAV 277


>gi|289707001|ref|ZP_06503336.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
 gi|289556326|gb|EFD49682.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58]
          Length = 696

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
           L + + G  +A   +            +P   R     +PK +LL GP G GKT +++ +
Sbjct: 164 LFKDVAGADEAVEELQEI----KEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAV 219

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 AGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|270159872|ref|ZP_06188528.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae D-4968]
 gi|289165374|ref|YP_003455512.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae NSW150]
 gi|269988211|gb|EEZ94466.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae D-4968]
 gi|288858547|emb|CBJ12428.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           longbeachae NSW150]
          Length = 754

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A+A A++         + LRD   P    L  GPTGVGK
Sbjct: 450 TLRNLERDLKLLVYGQDQAITALASAIK------LGRSGLRDPQKPVGCFLFAGPTGVGK 503

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 504 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 560


>gi|302876586|ref|YP_003845219.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307687261|ref|ZP_07629707.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302579443|gb|ADL53455.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 647

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G+ + K   + V   L+   +  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 156 KDVAGEDEEKAELQEVVDFLKYPKKYLEMGARI-----PKGMLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 211 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFESAKKN 247


>gi|194290075|ref|YP_002005982.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           atpase and peptidase m41 families [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223910|emb|CAQ69919.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Cupriavidus
           taiwanensis LMG 19424]
          Length = 627

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 154 QDVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 209 GEAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|239916685|ref|YP_002956243.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|281414857|ref|ZP_06246599.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
 gi|239837892|gb|ACS29689.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC
           2665]
          Length = 696

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
           L + + G  +A   +            +P   R     +PK +LL GP G GKT +++ +
Sbjct: 164 LFKDVAGADEAVEELQEI----KEFLTVPDRFRAVGAKIPKGVLLYGPPGTGKTLLAKAV 219

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 AGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 254


>gi|126724795|ref|ZP_01740638.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150]
 gi|126705959|gb|EBA05049.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150]
          Length = 884

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ+ A R+V+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 573 MEDELGRRVIGQKSAVRSVSNAVR------RARAGLNDEARPLGSFLFLGPTGVGKTELT 626

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 627 KAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 656


>gi|254255490|ref|ZP_04948806.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158]
 gi|124901227|gb|EAY71977.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158]
          Length = 638

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 172 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 GEAAVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 260


>gi|117617504|ref|YP_857801.1| ATP-dependent metallopeptidase HflB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558911|gb|ABK35859.1| ATP-dependent metallopeptidase HflB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 649

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVKELVDYLRDPSKFQKLGGKI-----PTGVLLVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 211 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 243


>gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans
           TK24]
 gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24]
 gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)]
 gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24]
          Length = 668

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|124025672|ref|YP_001014788.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
 gi|123960740|gb|ABM75523.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. NATL1A]
          Length = 640

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 31/261 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLEEVVTFLKQPERFTSVGAQI-----PRGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQ------ 288

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGIL 190
            R      G      T      ++   E +   I I   +    + S    PG     + 
Sbjct: 289 -RGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVT 347

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTVHRDSIQMV 241
             +   S  +   +       ++K           P     +   L++   +   + +  
Sbjct: 348 VDAPDISGRLSILKVHSRNKKLEKDLTLESIARRTPGFTGADLANLLNEAAILT-ARRRK 406

Query: 242 ENYGIVFLDE-FDKIVARDSG 261
           +  G+  +D+  D+I+A   G
Sbjct: 407 DQIGLSEIDDAVDRIIAGMEG 427


>gi|99034625|ref|ZP_01314579.1| hypothetical protein Wendoof_01000606 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 541

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--ILGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|158312094|ref|YP_001504602.1| ATPase [Frankia sp. EAN1pec]
 gi|158107499|gb|ABW09696.1| ATPase AAA-2 domain protein [Frankia sp. EAN1pec]
          Length = 870

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL R +IGQ +A R VA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 METELHRRVIGQDEAVRTVADAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAVVRIDMSEYAEKHSVAR 651


>gi|145298037|ref|YP_001140878.1| cell division protease ftsH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850809|gb|ABO89130.1| Cell division protease ftsH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 649

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKDEVKELVDYLRDPSKFQKLGGKI-----PTGVLLVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 211 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 243


>gi|322381175|ref|ZP_08055178.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154751|gb|EFX47022.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 677

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E      + + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 147 KSRARLYNEEKKRVTFQDVAGADEEKQELVEVVEFLKDPRKFSAVGARI-----PKGVLL 201

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 202 NGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 254


>gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|312881478|ref|ZP_07741270.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309370844|gb|EFP98304.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 756

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++             D     + L  GPTG
Sbjct: 447 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK-----LTRAGLGADHKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|307822781|ref|ZP_07653012.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307736385|gb|EFO07231.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 640

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  VA     LR+  + Q+L   +     P+ IL+VGP G GKT I+R +A 
Sbjct: 153 DVAGCEEAKEEVAELVDFLRDPQKFQKLGGQI-----PRGILMVGPPGTGKTLIARAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG  F  +  + F E+ +VG     V  +     + A  I+     D V
Sbjct: 208 EAGVKFFTISGSDFVEM-FVGVGASRVRDMFAQAKEHAPCIIFIDEIDAV 256


>gi|300774826|ref|ZP_07084689.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
 gi|300506641|gb|EFK37776.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
          Length = 673

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +E +    + + G + AK  V      L+N  +  +L   +     PK +LLVGP G GK
Sbjct: 180 KERIQVTFKDVAGLEGAKEEVQEVVDFLKNSEKYTKLGGKI-----PKGVLLVGPPGTGK 234

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 235 TLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFAQA 276


>gi|172065486|ref|YP_001816198.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
 gi|171997728|gb|ACB68645.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6]
          Length = 635

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 611

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +  +L A +     PK +LLVGP G GKT ++R +A
Sbjct: 161 NDVAGADEEKEELQEIVEFLKYPKKFIELGARI-----PKGVLLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 216 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQAKKN 252


>gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000]
 gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000]
          Length = 668

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|304311207|ref|YP_003810805.1| ATP-dependent clp protease, ATP-binding subunit [gamma
           proteobacterium HdN1]
 gi|301796940|emb|CBL45153.1| ATP-dependent clp protease, ATP-binding subunit [gamma
           proteobacterium HdN1]
          Length = 763

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ +A   ++ A++              +    + L  GPTGVGKT +
Sbjct: 462 RNLERDLRLAVFGQDEAIGVLSNAIK-----MSRAGLSHPDKPIGSFLFAGPTGVGKTEV 516

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA+  G   I+ +++++ E            GYVG +   ++ + +  + + 
Sbjct: 517 TRQLAKTMGMELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKSPHC 571


>gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 691

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G Q+AK   + +   L+   +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 192 NDVAGLQEAKEEIKEIVEFLKEPTKFTRLGGKI-----PKGALLIGPPGTGKTLLAKAVA 246

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 247 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFKQA 280


>gi|320451090|ref|YP_004203186.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
 gi|320151259|gb|ADW22637.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01]
          Length = 861

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ++A RAVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 559 LEDELHKRVVGQEEAIRAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELA 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++T++ E   V R
Sbjct: 613 KTLAATLFDTEEAMVRIDMTEYMEKHAVSR 642


>gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 600

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAV--AIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
             + G Q+AK  +   +A        + P         +PK +LLVGP G GKT +++ +
Sbjct: 143 EDVAGIQEAKEELQEVVAF------LKEPERFTAVGARIPKGVLLVGPPGTGKTLLAKAI 196

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  ++F E+ +VG     V  + R   + A  IV     D V
Sbjct: 197 AGEAGVPFFSMAASEFVEL-FVGVGASRVRDLFRQAKEKAPCIVFIDEIDAV 247


>gi|254585147|ref|XP_002498141.1| ZYRO0G03212p [Zygosaccharomyces rouxii]
 gi|238941035|emb|CAR29208.1| ZYRO0G03212p [Zygosaccharomyces rouxii]
          Length = 830

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L+   R +++ A +     P+  +L G  G GKT +++  A
Sbjct: 354 KDVAGCDEAKEEIEEFVSFLKEPSRYEKMGAKI-----PRGAILSGAPGTGKTLLAKATA 408

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       I +       + R++  
Sbjct: 409 GEAGVPFYFVSGSEFVEM-FVGVGASRV-RDLFKTARENAPSMIFVDEIDAIGKARQKGN 466

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  + L      D+ ++I+  +
Sbjct: 467 FSGANDERENTLNQLLVEMDGFTPADHVVVLAGTNRPDILDRALLRPGRFDRHVNIDKPE 526

Query: 172 TSSDISNFDIP---GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--R 226
            S   + F++       +  I +L    + +        I  +  +      R+ESD  +
Sbjct: 527 LSGRQAIFEVHLKKIKLAGDIFDLKNRLAALTPGFSGADIANACNEAALIAARNESDSVK 586

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L+  +      I  VE    +   E  KIVA
Sbjct: 587 LVHFEQAIERVIGGVERNTKLLSPEEKKIVA 617


>gi|27904833|ref|NP_777959.1| cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340080|sp|Q89AF2|FTSH_BUCBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|27904231|gb|AAO27064.1| Cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 610

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILL 58
           K      P + V      + G  +AK     +   L+   R Q+L   +     PK IL+
Sbjct: 136 KSKARMLPEDQVKITFSDVAGCDEAKEEVQELVEYLKEPSRFQKLGGKI-----PKGILM 190

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
           VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  +      VA  I+ 
Sbjct: 191 VGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKVAPCIIF 249

Query: 116 ESRRDEV 122
               D V
Sbjct: 250 IDEIDAV 256


>gi|255725824|ref|XP_002547838.1| hypothetical protein CTRG_02135 [Candida tropicalis MYA-3404]
 gi|240133762|gb|EER33317.1| hypothetical protein CTRG_02135 [Candida tropicalis MYA-3404]
          Length = 779

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 107/272 (39%), Gaps = 40/272 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 276 KDVAGCDESKEEIMEFV----KFLQDPQKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 331

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            AG PF+ V  ++F E+ +VG     V  + +   ++A +I+     D + +E+      
Sbjct: 332 EAGVPFLSVSGSEFVEM-FVGVGASRVRDLFKTAREMAPSIIFVDEIDAIGKERGNGKIG 390

Query: 127 ----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G          A +N  ++  K L      D+ I I+V     
Sbjct: 391 GNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFDRHISIDVP---- 446

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                D+ G   +  ++LS++  + +     K+  +   K Y +L  +  D+L     + 
Sbjct: 447 -----DVEGRKQIFKVHLSKIKLQALEDIDVKQKDIDFAK-YQQLKTETLDQL--AGRLS 498

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266
             +           ++E   I AR+    + +
Sbjct: 499 ALTPGFAGADIANCVNEGALIAAREDSPSVDI 530


>gi|58617389|ref|YP_196588.1| ClpB protein [Ehrlichia ruminantium str. Gardel]
 gi|58417001|emb|CAI28114.1| ClpB protein [Ehrlichia ruminantium str. Gardel]
          Length = 863

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 34/235 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ  A +AV+ A+     R+        +    + L +GPTGVGKT + +
Sbjct: 565 MEEEIGKTVIGQDSAVKAVSDAV-----RRSRAGVQDAQKPLGSFLFLGPTGVGKTELVK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++ ++++F E            GYVG +       L +       + 
Sbjct: 620 TLAEFLFCDKSALLRFDMSEFMEKHAVSRLIGAPPGYVGYDQGGA---LTEAVRRRPYQV 676

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              +  E+A  +    +L  L     T N           G++ D    I V  ++    
Sbjct: 677 ILFDEIEKAHGDIFNILLQVLDEGRLTDNH----------GKLVDFRNTILVLTSNLGQE 726

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDM 230
                   ++   ++ E  + V+ S  + +    + +   +  L ++  +R+ID+
Sbjct: 727 ILMNNESGNINEESVKESITNVLRSHFRPEFLNRLDEIIIFHRLTKEHIERIIDV 781


>gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|325577681|ref|ZP_08147956.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392]
 gi|325160426|gb|EGC72552.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392]
          Length = 856

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|46446274|ref|YP_007639.1| cell division protein FtsH [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627381|sp|Q6MDI5|FTSH_PARUW RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46399915|emb|CAF23364.1| probable cell division protein FtsH [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 916

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  SP  ++++ D     + + G  +A   +      L+N  +   L   +     PK
Sbjct: 404 MNFGKSPARLLNKGDNKITFKDVAGVDEALEELQEIVEFLKNPQKFTSLGGKI-----PK 458

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    +I RDL + A
Sbjct: 459 GVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASRI-RDLFEQA 512


>gi|327399481|ref|YP_004340350.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
 gi|327182110|gb|AEA34291.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411]
          Length = 612

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 13/197 (6%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ +   +   + R            PK +LLVG  GVGKT  ++  A  AG
Sbjct: 165 DVAGADEAKQEIQEIVE--YLRDPQKYQRLGGRAPKGVLLVGVPGVGKTLFAKATAGEAG 222

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR-ESRRDEVREQASINAEERILDA 137
            PFI +  ++F E+ +VG    ++ RDL + A  +       DE+       A       
Sbjct: 223 VPFISISGSEFIEM-FVGVGASRV-RDLFNEAKKLSPCIVFIDEIDAIGKSRA------- 273

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L   T+     +   + L + +  D    + +   ++     D P     G  +   +  
Sbjct: 274 LNSLTSNDEREQTLNQLLAEMDGFDSSKGVIIMAATNRPEVLD-PALLRPGRFDRQIIVD 332

Query: 198 KVMGSGRKKKIRMSVQK 214
           K    GR+   ++ ++K
Sbjct: 333 KPDVRGREAIFKVHIKK 349


>gi|301154792|emb|CBW14255.1| protein disaggregation chaperone [Haemophilus parainfluenzae T3T1]
          Length = 856

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|87125460|ref|ZP_01081305.1| Peptidase M41, FtsH [Synechococcus sp. RS9917]
 gi|86166760|gb|EAQ68022.1| Peptidase M41, FtsH [Synechococcus sp. RS9917]
          Length = 625

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 170 DVAGVDEAKDELTEIVDFLKTPERYAEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 225 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKN 260


>gi|303228848|ref|ZP_07315661.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a]
 gi|302516468|gb|EFL58397.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK+ +      L++  +   + A      +PK +LL GP G GKT +++ +A 
Sbjct: 155 DVAGAEEAKQELTEVVEFLKDPGKFTSIGA-----TIPKGVLLAGPPGTGKTLLAKAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 210 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFGQAKKN 245


>gi|302831638|ref|XP_002947384.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f.
           nagariensis]
 gi|300267248|gb|EFJ51432.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 19  YIIGQQDAKRAV--AIALRNRWRRQ------QLPADLRDELMPKNILLVGPTGVGKTAIS 70
            + G   AK  +   + +     RQ      +L        MP  +LL GP G GKT ++
Sbjct: 161 DVAGVDAAKEELLEVVGV----MRQTKSTFSKLKGLPAQVRMPSGVLLCGPPGTGKTLLA 216

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQ 125
           + +A  AG PF  V  ++F E+ +VGR   +I     +    A  +V     D V  +
Sbjct: 217 KAVAGEAGVPFFAVSASEFVEL-FVGRGAARIRELFAEARKAAPCVVFIDELDGVGSR 273


>gi|253315634|ref|ZP_04838847.1| endopeptidase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 818

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLFEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L      L + + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLT---NRLFE-QNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|169342349|ref|ZP_02863416.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
 gi|169299574|gb|EDS81637.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str.
           JGS1495]
          Length = 713

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-RNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK ++   +       +  ++ A L     PK  LLVGP G GKT +++ +A
Sbjct: 166 KDVAGQDEAKESLVEIVDFLHDTSKYVEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 221 GEAKVPFFSMSGSDFVEM-FVGMGAARV-RDLFKQA 254


>gi|319957242|ref|YP_004168505.1| atpase aaa-2 domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419646|gb|ADV46756.1| ATPase AAA-2 domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 858

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I   L   ++GQ +A +AVA A++      +  A L D   P  + L +GPTGVGKT  +
Sbjct: 565 IEDYLKEEVVGQDEAIKAVARAIK------RNKAGLSDVNRPIGSFLFLGPTGVGKTQTA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA+         I++++T++ E   V R V      +       + E+ R +
Sbjct: 619 KALAKFLFDSEKALIRIDMTEYMEKHSVSRLVGAAPGYVGYEEGGQLTEAVRRK 672


>gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA2]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA3]
 gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA4]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|149195298|ref|ZP_01872386.1| ENDOPEPTIDASE CLP ATP-BINDING CHAIN A [Caminibacter mediatlanticus
           TB-2]
 gi|149134562|gb|EDM23050.1| ENDOPEPTIDASE CLP ATP-BINDING CHAIN A [Caminibacter mediatlanticus
           TB-2]
          Length = 730

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 31/231 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ +A + +   +    +R++     R++    + L VGPTGVGKT I
Sbjct: 433 KNLEDNLKAKVFGQDEAIKELVKVI----KRKK-AGLTREDKPIGSFLFVGPTGVGKTEI 487

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA + G  F++ +++++ E            GYVG     ++ + +    + V    
Sbjct: 488 AKQLANILGINFLRFDMSEYQEKHSVAKLIGSPPGYVGYEKGGLLTEAIRKNPHTVL--L 545

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +  + +L  +   T T +          DG  +D    + +  ++  +  
Sbjct: 546 LDEI-EKAHPDIVQILLQVMDNATLTDS----------DGRKADFRNVVLIMTSNLGVGE 594

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            + PG          E   +        ++   V+  +  L ++    ++D
Sbjct: 595 GNAPGFMQEMSEFKEEAIHRFFAPEFLNRLDAIVR--FKPLSKESILLVVD 643



 Score = 36.4 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE   R    V  K L+K    L++       I + ++ +  + + +  T+ + +ALA
Sbjct: 616 FAPEFLNRLDAIVRFKPLSKESILLVVDK----FIDELQDKLNNKKVKITLTKRAKEALA 671

Query: 372 DVAVNLNSTVGDIGARRLQTVMER-----VLEDISFSASDLQEKTVVIDAEYVRLH 422
           +           +GAR L  V+E      + E+I F         V ID  YV+  
Sbjct: 672 N-----KGYSPKLGARPLARVIEENIVEPLSEEILF-GDLRSGGEVKID--YVKEK 719


>gi|113868415|ref|YP_726904.1| FtsH endopeptidase [Ralstonia eutropha H16]
 gi|113527191|emb|CAJ93536.1| FtsH endopeptidase [Ralstonia eutropha H16]
          Length = 627

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A
Sbjct: 154 QDVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 209 GEAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|58697256|ref|ZP_00372641.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536401|gb|EAL59841.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 487

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--ILGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|261212252|ref|ZP_05926538.1| cell division protein FtsH [Vibrio sp. RC341]
 gi|260838860|gb|EEX65511.1| cell division protein FtsH [Vibrio sp. RC341]
          Length = 646

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 648

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K     V   L++  R   L A +     PK ILLVGP G GKT ++R +A
Sbjct: 161 NDVAGADEEKAELEEVVEFLKDPRRFSSLGARI-----PKGILLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 216 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETAKKN 252


>gi|260581686|ref|ZP_05849483.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127]
 gi|260095279|gb|EEW79170.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127]
          Length = 856

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|257457408|ref|ZP_05622579.1| ATP-dependent chaperone protein ClpB [Treponema vincentii ATCC
           35580]
 gi|257445330|gb|EEV20402.1| ATP-dependent chaperone protein ClpB [Treponema vincentii ATCC
           35580]
          Length = 858

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + ++GQ  A +AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 565 DLESVLQKRVVGQDQAVQAVADAIR------RNRAGLSDPNRPLGSFLCIGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA           +++++++ E   V R
Sbjct: 619 ARTLADFLFNDDRALTRIDMSEYMEKHSVSR 649


>gi|224531857|ref|ZP_03672489.1| cell division protein FtsH [Borrelia valaisiana VS116]
 gi|224511322|gb|EEF81728.1| cell division protein FtsH [Borrelia valaisiana VS116]
          Length = 635

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ++ K+ +      L+N  + +++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 172 KDVAGQEEVKQELYEVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 226

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 227 GEAGVSFFHMSGSDFVEM-FVGVGASRV-RDLFDNA 260


>gi|149411920|ref|XP_001510851.1| PREDICTED: similar to AFG3(ATPase family gene 3)-like 1 (yeast)
           [Ornithorhynchus anatinus]
          Length = 790

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 294 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 351

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +
Sbjct: 352 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKNAPCILFIDEIDAIGRK 400


>gi|145636576|ref|ZP_01792243.1| ClpB [Haemophilus influenzae PittHH]
 gi|145270102|gb|EDK10038.1| ClpB [Haemophilus influenzae PittHH]
          Length = 856

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|108763339|ref|YP_634161.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Myxococcus
           xanthus DK 1622]
 gi|108467219|gb|ABF92404.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Myxococcus
           xanthus DK 1622]
          Length = 765

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTA 68
           + +  EL   I GQ  A + +  A+          + LR  E    + L  GPTGVGKT 
Sbjct: 460 QNLEKELQGVIYGQDSAIKDLVSAI------MLARSGLRAPEKPIGSFLFSGPTGVGKTE 513

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++++LA+  G  F++ ++++++E            GYVG +   ++ D V      
Sbjct: 514 LAKQLAQSLGVEFLRYDMSEYSEKHTVSRLIGAPPGYVGFDQGGLLTDAVRKHPYS 569


>gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL060PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL001PA1]
          Length = 717

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|303230955|ref|ZP_07317698.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6]
 gi|302514337|gb|EFL56336.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK+ +      L++  +   + A      +PK +LL GP G GKT +++ +A 
Sbjct: 155 DVAGAEEAKQELTEVVEFLKDPGKFTSIGA-----TIPKGVLLAGPPGTGKTLLAKAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 210 EAGVPFFTISGSDFVEM-FVGVGASRV-RDLFGQAKKN 245


>gi|1589774|gb|AAC44563.1| HpFtsH [Helicobacter pylori]
          Length = 632

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 170 NDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             PF  +  + F E+ +VG    ++ RDL + A            ++QA        +DA
Sbjct: 228 HVPFFSMGGSSFIEM-FVGLGASRV-RDLFETA------------KKQAPSIIFIDEIDA 273

Query: 138 LVGKTA-------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
           +    A            +   + L + +    E    +   +++      P     G  
Sbjct: 274 IPKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRF 333

Query: 191 NLSELFSKVMGSGRKKKIRMSVQ 213
           +   L  K   +GR + +++ ++
Sbjct: 334 DRQVLVDKPDFNGRVEILKVDIK 356


>gi|300691219|ref|YP_003752214.1| cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
 gi|299078279|emb|CBJ50927.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
          Length = 628

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|291242616|ref|XP_002741203.1| PREDICTED: AFG3 ATPase family gene 3-like 2-like, partial
           [Saccoglossus kowalevskii]
          Length = 560

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           R + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 58  RDVAGCEEAKLEIMEFV-NFLKNPQQYIELGAKI-PKGAVLTGPPGTGKTLLAKATAGEA 115

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 116 NVPFITVNGSEFLEM-FVGVGPSRVRDMFSMARKNAPCILFIDEIDAVGRK 165


>gi|256419512|ref|YP_003120165.1| ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
 gi|256034420|gb|ACU57964.1| ATP-dependent metalloprotease FtsH [Chitinophaga pinensis DSM 2588]
          Length = 673

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L+N  +   L   +     PK  LLVGP G GKT +++ +A 
Sbjct: 203 DVAGLDEAKVEVMEIVDFLKNPKKYTALGGKI-----PKGALLVGPPGTGKTLLAKAMAG 257

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 258 EAQVPFFSMSGSDFVEL-FVGVGASRV-RDLFKQA 290


>gi|170076675|ref|YP_001733313.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002]
 gi|169884344|gb|ACA98057.1| ATP-dependent metalloprotease FtsH subfamily [Synechococcus sp. PCC
           7002]
          Length = 620

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 249


>gi|118602186|ref|YP_903401.1| ATP-dependent metalloprotease FtsH [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567125|gb|ABL01930.1| membrane protease FtsH catalytic subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 640

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L N  +  ++   +     PK +LLVGP G GKT +++ +A
Sbjct: 151 DDVAGVDEAKDDVSELVDFLSNPGKFTKVGGKI-----PKGVLLVGPPGTGKTLLAKAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 GEADVPFFFISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 255


>gi|110833183|ref|YP_692042.1| cell division protein FtsH [Alcanivorax borkumensis SK2]
 gi|110646294|emb|CAL15770.1| cell division protein FtsH [Alcanivorax borkumensis SK2]
          Length = 638

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGVEEAKEEVQELVEFLRDPAKFQRLGGKI-----PRGVLMVGSPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|319760243|ref|YP_004124181.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038957|gb|ADV33507.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 645

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V   +   + R+          +PK IL+VGP G GKT +++ +A  + 
Sbjct: 155 DVAGCDEAKEEVKELVD--YLREPNKFKKLGGKIPKGILMVGPPGTGKTLLAKAIAGESK 212

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 VPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 258


>gi|261338715|ref|ZP_05966599.1| ATP-dependent chaperone protein ClpB [Bifidobacterium gallicum DSM
           20093]
 gi|270276270|gb|EFA22124.1| ATP-dependent chaperone protein ClpB [Bifidobacterium gallicum DSM
           20093]
          Length = 907

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQQ+A RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 570 MEEFLGDRVIGQQEAVRAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 624

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 625 ALAEFLFDDERAMVRLDMSEYMEKASVSR 653


>gi|145351332|ref|XP_001420035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580268|gb|ABO98328.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 800

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +A  +   RN  +  +L   L     PK +LL GP G GKT ++R +A
Sbjct: 313 DDVKGCDEAKDELAEIVEYLRNPEKFTRLGGKL-----PKGVLLTGPPGTGKTLLARAVA 367

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF     ++F E+ +VG   +++ R L   A
Sbjct: 368 GEADVPFFYRSGSEFEEM-FVGVGSKRV-RQLFAAA 401


>gi|320101637|ref|YP_004177228.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
 gi|319748919|gb|ADV60679.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK   + +   L+N  +  +L   +     PK +LLVGP G GKT ++R +A  
Sbjct: 224 VAGLESAKYELQEIVEFLKNPEKFARLGGRI-----PKGVLLVGPPGSGKTLLARAVAGE 278

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           AG PF  +  ++F ++ +VG     V  + +   + +  I+     D V
Sbjct: 279 AGVPFFSISGSEFIQM-FVGVGASRVRDMFKTAKENSPCILFIDEIDAV 326


>gi|301608280|ref|XP_002933705.1| PREDICTED: paraplegin-like [Xenopus (Silurana) tropicalis]
          Length = 768

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 282 KDVAGMHEAKLEVKEFVDYLKSPDRYLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 336

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + ++    A  IV     D V ++
Sbjct: 337 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARTRAPCIVYIDEIDAVGKK 389


>gi|295690175|ref|YP_003593868.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Caulobacter
           segnis ATCC 21756]
 gi|295432078|gb|ADG11250.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Caulobacter
           segnis ATCC 21756]
          Length = 776

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +E+ ++L R + GQ +A   ++ A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 462 KELETDLKRAVFGQDEALTQLSAAMK------LARAGLREPNKPIGSYLFSGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            +++LA+  G   ++ +++++ E            GYVG +    + D VD   +
Sbjct: 516 AAKQLAQTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGQLTDAVDQHPH 570



 Score = 36.4 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE + R    V  K L     R ++       ++Q +  +    I ++ ++D+ D LA
Sbjct: 648 FTPEFRNRLDAVVAFKPLTPEIIRQVVQK----FVMQLEAQLADRNITIELSDDAADWLA 703

Query: 372 DVAVNLNSTVGDIGARRLQTVMER-----VLEDISF 402
                 N      GAR L  V++      + +DI F
Sbjct: 704 K-----NGFDELYGARPLARVIQEHIKKPLADDILF 734


>gi|254467968|ref|ZP_05081374.1| cell division protein [beta proteobacterium KB13]
 gi|207086778|gb|EDZ64061.1| cell division protein [beta proteobacterium KB13]
          Length = 631

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  +  +L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 157 DVAGCDEAKEEVTELVDFLRDPNKFHKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFYTISGSDFVEM-FVGVGAARV-RDMFEQAKKN 247


>gi|255744146|ref|ZP_05418099.1| cell division protein FtsH [Vibrio cholera CIRS 101]
 gi|262169936|ref|ZP_06037626.1| cell division protein FtsH [Vibrio cholerae RC27]
 gi|255738086|gb|EET93478.1| cell division protein FtsH [Vibrio cholera CIRS 101]
 gi|262021670|gb|EEY40381.1| cell division protein FtsH [Vibrio cholerae RC27]
          Length = 648

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA
           2018]
          Length = 602

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 8   SPREIVSEL-DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           SP ++  ++  + + G  + K     +   L+   R  ++ A +     PK +LLVGP G
Sbjct: 149 SPDDLKQKVTFKDVAGADEEKGELEEIVDFLKQPKRYIEMGARI-----PKGVLLVGPPG 203

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GKT +++ ++  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 204 TGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|325526643|gb|EGD04184.1| cell division protease [Burkholderia sp. TJI49]
          Length = 494

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAAVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|262401665|ref|ZP_06078231.1| cell division protein FtsH [Vibrio sp. RC586]
 gi|262352082|gb|EEZ01212.1| cell division protein FtsH [Vibrio sp. RC586]
          Length = 647

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 154 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 209 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 241


>gi|229512899|ref|ZP_04402366.1| cell division protein FtsH [Vibrio cholerae TMA 21]
 gi|229350148|gb|EEO15101.1| cell division protein FtsH [Vibrio cholerae TMA 21]
          Length = 651

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|229520928|ref|ZP_04410350.1| cell division protein FtsH [Vibrio cholerae TM 11079-80]
 gi|229342161|gb|EEO07157.1| cell division protein FtsH [Vibrio cholerae TM 11079-80]
          Length = 651

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|119963542|ref|YP_945966.1| cell division protein (ftsH) [Arthrobacter aurescens TC1]
 gi|119950401|gb|ABM09312.1| putative cell division protein (ftsH) [Arthrobacter aurescens TC1]
          Length = 689

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 170 DVAGADEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|15640657|ref|NP_230286.1| cell division protein FtsH [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147673292|ref|YP_001216131.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|227080818|ref|YP_002809369.1| cell division protein FtsH [Vibrio cholerae M66-2]
 gi|229505741|ref|ZP_04395251.1| cell division protein FtsH [Vibrio cholerae BX 330286]
 gi|229509226|ref|ZP_04398711.1| cell division protein FtsH [Vibrio cholerae B33]
 gi|229519565|ref|ZP_04409008.1| cell division protein FtsH [Vibrio cholerae RC9]
 gi|229608852|ref|YP_002879500.1| cell division protein FtsH [Vibrio cholerae MJ-1236]
 gi|254850871|ref|ZP_05240221.1| cell division protein FtsH [Vibrio cholerae MO10]
 gi|9655072|gb|AAF93803.1| cell division protein FtsH [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|146315175|gb|ABQ19714.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|227008706|gb|ACP04918.1| cell division protein FtsH [Vibrio cholerae M66-2]
 gi|227012462|gb|ACP08672.1| cell division protein FtsH [Vibrio cholerae O395]
 gi|229344254|gb|EEO09229.1| cell division protein FtsH [Vibrio cholerae RC9]
 gi|229353798|gb|EEO18734.1| cell division protein FtsH [Vibrio cholerae B33]
 gi|229357964|gb|EEO22881.1| cell division protein FtsH [Vibrio cholerae BX 330286]
 gi|229371507|gb|ACQ61930.1| cell division protein FtsH [Vibrio cholerae MJ-1236]
 gi|254846576|gb|EET24990.1| cell division protein FtsH [Vibrio cholerae MO10]
          Length = 651

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|116206250|ref|XP_001228934.1| hypothetical protein CHGG_02418 [Chaetomium globosum CBS 148.51]
 gi|88183015|gb|EAQ90483.1| hypothetical protein CHGG_02418 [Chaetomium globosum CBS 148.51]
          Length = 753

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 33/188 (17%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   R   R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 262 DVAGMDEAKTEIMEFVSFLRTPERFQRLGAKI-----PRGAILSGPPGTGKTLLAKATAG 316

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
            +  PF  V  ++F E+ +VG     V  +       A  I+     D V + +A     
Sbjct: 317 ESQVPFYSVSGSEFVEM-FVGVGASRVRDLFATARKNAPCIIFIDEIDAVGKSRADGGGF 375

Query: 127 -------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                        +IL  + G   +         N  ++  K L      D+ I I+   
Sbjct: 376 KGGGNDEREATLNQILTEMDGFNTSEQVVVLAGTNRPDILDKALMRPGRFDRHIHIDRPT 435

Query: 172 TSSDISNF 179
                S F
Sbjct: 436 MKGRKSIF 443


>gi|66362372|ref|XP_628150.1| AFG1 ATpase family AAA ATpase  [Cryptosporidium parvum Iowa II]
 gi|46227382|gb|EAK88317.1| predicted AFG1 ATpase family AAA ATpase [Cryptosporidium parvum
           Iowa II]
          Length = 719

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 100/265 (37%), Gaps = 51/265 (19%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++AK+    +   L++  R Q L A +     PK  LLVGP G GKT +++ +A 
Sbjct: 260 DIAGMKEAKQEIYELVEFLKDPKRFQDLGAKI-----PKGALLVGPPGTGKTLLAKAVAG 314

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQA---- 126
            A  PF  +  + F EI +VG    ++ R+L   A     +IV     D V R++A    
Sbjct: 315 EANVPFFYISGSDFIEI-FVGMGASRV-RELFSQARKLSPSIVFIDEIDAVGRKRAKGGG 372

Query: 127 --------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
                     +   +IL  + G T  +        N  +V    L      D+ I+IE  
Sbjct: 373 FAASSNDERESTLNQILVEMDGFTENNGVIVLAGTNRSDVLDPALTRPGRFDRIINIE-- 430

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY-PELMRDESDRLID 229
                      P       +    L    +     K   +    C  P  +  E   L +
Sbjct: 431 ----------RPNLEERKEIFKIHLKPLKLNEKLNKDELIKYLACLSPGFVGSEIRNLCN 480

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDK 254
              +H  + +   N G+  +D FDK
Sbjct: 481 EAAIH--AARRTSNSGVDLID-FDK 502


>gi|315185601|gb|EFU19370.1| ATP-dependent chaperone ClpB [Spirochaeta thermophila DSM 6578]
          Length = 870

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 102/268 (38%), Gaps = 19/268 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRLARL 76
           R +IGQ++A RAVA A+R      +  + L D   P  + L +GPTGVGKT ++R LA  
Sbjct: 575 RRVIGQEEAIRAVADAIR------RNRSGLSDPRRPMGVFLFLGPTGVGKTELARTLADY 628

Query: 77  A---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
                   ++++++++ E   V R +      +             + VR +        
Sbjct: 629 LFNDERAMVRIDMSEYMERHAVSRLIGAPPGYV----GYEEGGQLTEAVRRRPYSVILFD 684

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEIS--DKEIDIEVADTSSDISNFDIPGGASVGILN 191
            ++           +     +L D +    D +  I +  ++                  
Sbjct: 685 EVEKAHPDVFNIMLQIFDDGRLTDSQGHVVDFKNTIIIMTSNIGSDLILEADDLEKVKPQ 744

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
           ++ L           +I   +   +  L ++   +++D++ + R + ++ E +  + +D+
Sbjct: 745 VNSLLRASFKPEFLNRIDEMIV--FHRLTQEHIYKILDLE-IARLNERLSEQHLSIEVDQ 801

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLV 279
             K +    G         ++R +  L+
Sbjct: 802 KAKEILVREGFSPEFGARPLKRSVQRLI 829


>gi|289679171|ref|ZP_06500061.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. syringae FF5]
          Length = 713

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|220911094|ref|YP_002486403.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
 gi|219857972|gb|ACL38314.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus
           A6]
          Length = 687

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 169 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|153827664|ref|ZP_01980331.1| cell division protein FtsH [Vibrio cholerae MZO-2]
 gi|254292203|ref|ZP_04962971.1| cell division protein FtsH [Vibrio cholerae AM-19226]
 gi|149737858|gb|EDM52763.1| cell division protein FtsH [Vibrio cholerae MZO-2]
 gi|150421884|gb|EDN13863.1| cell division protein FtsH [Vibrio cholerae AM-19226]
          Length = 651

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|146300355|ref|YP_001194946.1| ATP-dependent metalloprotease FtsH [Flavobacterium johnsoniae
           UW101]
 gi|146154773|gb|ABQ05627.1| ATP-dependent metalloprotease FtsH; peptidase family M41
           [Flavobacterium johnsoniae UW101]
          Length = 641

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I +   + + G + AK  +      L+N  +   L   +     PK  LLVGP G GKT
Sbjct: 186 DIKTTF-KDVAGLEGAKEEIQEIVEFLKNPEKYTNLGGKI-----PKGALLVGPPGTGKT 239

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 240 LLAKAVAGEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 280


>gi|88607638|ref|YP_505717.1| ATP-dependent metalloprotease FtsH [Anaplasma phagocytophilum HZ]
 gi|88598701|gb|ABD44171.1| ATP-dependent metalloprotease FtsH [Anaplasma phagocytophilum HZ]
          Length = 611

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++R +  +L   +     PK  LL+G  G GKT ++R +A
Sbjct: 158 DDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKI-----PKGCLLIGSPGTGKTLLARAIA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RD+ +     A  I+     D V
Sbjct: 213 GEANVPFFSISGSDFVEM-FVGVGASRV-RDMFEQGKKHAPCIIFVDEIDAV 262


>gi|326433709|gb|EGD79279.1| AFG3-like protein 2 [Salpingoeca sp. ATCC 50818]
          Length = 834

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + N  +  +    L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 311 KDVAGCDEAKVEILEFV-NFLKHPEQYRKLGAKI-PKGAILSGPPGTGKTLLAKATAGEA 368

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA------- 126
             PF  +  ++F E+ +VG     V  +  +    A  I+     D V R ++       
Sbjct: 369 DVPFYSISGSEFLEM-FVGVGPARVRDLFAEARKNAPCIIFIDEIDAVGRARSKSGGFGG 427

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G  ++         N ++V    L      D++I I++ D   
Sbjct: 428 GNDERENTLNQLLVEMDGMQSSENVVVLAGTNRQDVLDPALLRPGRFDRQITIDLPDIKG 487

Query: 175 DISNFDIPGGASVGILNLSELFSKV 199
             S F++        L+  ++  K+
Sbjct: 488 RRSIFNVHLSRIQTELDKDDVAKKL 512


>gi|256822681|ref|YP_003146644.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella
           koreensis DSM 16069]
 gi|256796220|gb|ACV26876.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella
           koreensis DSM 16069]
          Length = 755

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   ++ +++            ++     + L  GPTGVGKT +
Sbjct: 449 QNLERNLKMVVFGQDKAIETLSESIK-----LSRAGLGQENKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +++LARL G   I+++++++ E            GYVG +   ++ + V+   +
Sbjct: 504 TKQLARLMGVELIRIDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAVNKNPH 557


>gi|205372096|ref|ZP_03224913.1| class III stress response-related ATPase [Bacillus coahuilensis
           m4-4]
          Length = 816

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 121/322 (37%), Gaps = 51/322 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L   +IGQ++A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LESILHSRVIGQEEAVKAVSKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           R LA          I+++++++ E     R V      +             ++VR +  
Sbjct: 556 RALAEAMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYV----GYDEGGQLTEKVRRKPY 611

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                 +LD +  + A  +   +  + L DG ++D +      D  + +       GAS 
Sbjct: 612 SVI---LLDEI--EKAHPDVFNILLQVLEDGRLTDSK--GRTVDFRNTVLIMTSNVGAST 664

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM----------------- 230
              N +  F+        K ++  V +      R E    ID                  
Sbjct: 665 LQRNKNVGFNVSDSGEDYKDMKGKVMEELKRAFRPEFLNRIDETIVFHSLEKAHLQEIVT 724

Query: 231 ---DTVHRDSIQMVENYGIVFLDEF-DKIVARDSGNGIGV-------SREGVQRDLLPLV 279
              D + +  I+  ++  +   D+  DKI         G         +    R    L+
Sbjct: 725 LMSDQLTKRLIE--QDIHLSLTDKAKDKIADEGFDPEYGARPLRRAIQKHIEDRLSEELL 782

Query: 280 EGSSVSTKYGSINTDHILFIAS 301
           +G+ ++ +  SI+ +   F  +
Sbjct: 783 KGTIITGQNISIDVEEGEFKVN 804


>gi|72382133|ref|YP_291488.1| FtsH peptidase [Prochlorococcus marinus str. NATL2A]
 gi|72001983|gb|AAZ57785.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 640

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 93/261 (35%), Gaps = 31/261 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLEEVVTFLKQPERFTSVGAQI-----PRGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQ------ 288

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGIL 190
            R      G      T      ++   E +   I I   +    + S    PG     + 
Sbjct: 289 -RGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVT 347

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTVHRDSIQMV 241
             +   S  +   +       ++K           P     +   L++   +   + +  
Sbjct: 348 VDAPDISGRLSILKVHSRNKKLEKDLTLESIARRTPGFTGADLANLLNEAAILT-ARRRK 406

Query: 242 ENYGIVFLDE-FDKIVARDSG 261
              G+  +D+  D+I+A   G
Sbjct: 407 NQIGLSEIDDAVDRIIAGMEG 427


>gi|15836983|ref|NP_297671.1| ATP-dependent Clp protease subunit [Xylella fastidiosa 9a5c]
 gi|54035911|sp|Q9PGC1|CLPB_XYLFA RecName: Full=Chaperone protein ClpB
 gi|9105213|gb|AAF83191.1|AE003889_8 ATP-dependent Clp protease subunit [Xylella fastidiosa 9a5c]
          Length = 861

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + ++L R ++GQ++A + V+ A+R      +    L D   P    L +GPTGVGKT + 
Sbjct: 562 MEADLGRRVVGQEEAIKVVSDAVR------RSRTGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 673

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++ K   + V   L+N  +  +L A +     P+ ILLVGP G GKT +++ +A
Sbjct: 168 DDVAGVEEEKHELQEVVDFLKNPKKYSELGARI-----PRGILLVGPPGTGKTLLAKAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             AG PF  +  + F E+ +VG    ++ RDL 
Sbjct: 223 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLF 253


>gi|119484306|ref|ZP_01618923.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119457780|gb|EAW38903.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 612

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  ++     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGIEQAKLELSEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|307327053|ref|ZP_07606243.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
 gi|306887351|gb|EFN18347.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu
           4113]
          Length = 680

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGADEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|297580763|ref|ZP_06942689.1| cell division protein FtsH [Vibrio cholerae RC385]
 gi|297535179|gb|EFH74014.1| cell division protein FtsH [Vibrio cholerae RC385]
          Length = 651

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642]
 gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642]
          Length = 352

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 10  REIVSELDRYI-----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           R+IV+E+ + +     +GQ++AKR   I L           +   +  PKN+L  GP G 
Sbjct: 92  RDIVTEIVKDVKLDDVVGQEEAKRKARIILEY-----LKNPEKFGKWAPKNVLFYGPPGT 146

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           GKT +++ LA  A  PF+ V+ T+     +G   R + ++      +A  IV     D +
Sbjct: 147 GKTMMAKALANEAKVPFLSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIVFLDEFDSI 206


>gi|123966658|ref|YP_001011739.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515]
 gi|123201024|gb|ABM72632.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515]
          Length = 620

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A
Sbjct: 170 DDVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 228 EVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|15806043|ref|NP_294744.1| cell division protein FtsH [Deinococcus radiodurans R1]
 gi|6458747|gb|AAF10593.1|AE001953_7 cell division protein FtsH [Deinococcus radiodurans R1]
          Length = 655

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   LR   +  QL A +     P  +LLVGP G GKT +++ +A 
Sbjct: 201 DVAGCDEAKQDLQEVVDFLRQPEKYHQLGARI-----PHGVLLVGPPGSGKTLLAKAVAG 255

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  P+  +  + F E+ +VG    ++ RDL + A
Sbjct: 256 EAKVPYFSISGSDFVEM-FVGVGAARV-RDLFEQA 288


>gi|330881204|gb|EGH15353.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 730

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 420 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 474

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 475 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 534

Query: 111 INI 113
            + 
Sbjct: 535 PHC 537


>gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1]
          Length = 711

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|331700249|ref|YP_004336488.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
 gi|326954938|gb|AEA28635.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
          Length = 871

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A R+V+ A+R      +  A + DE  P    L +GPTGVGKT ++
Sbjct: 565 MEDELGKRVVGQAEAVRSVSDAVR------RARAGIADENRPTGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++++E   V R V
Sbjct: 619 KALAEFLFDDERAMVRIDMSEYSEKHSVARLV 650


>gi|293188976|ref|ZP_06607709.1| ATP-dependent chaperone protein ClpB [Actinomyces odontolyticus
           F0309]
 gi|292822078|gb|EFF81004.1| ATP-dependent chaperone protein ClpB [Actinomyces odontolyticus
           F0309]
          Length = 866

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 568 MEDELGKRLIGQKEAVRAVSDAVR------RSRAGLSDPNRPTGSFLFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++++E   V R V
Sbjct: 622 KALAEFLFDDERAMVRIDMSEYSEKHSVARLV 653


>gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis]
          Length = 702

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 28/210 (13%)

Query: 12  IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I       + G  +AK     V   LR+  +  QL A L     PK ILL+GP G GKT 
Sbjct: 229 ITDVRFEDVCGMDEAKNELEDVVDYLRDPDKFTQLGAKL-----PKGILLIGPPGTGKTL 283

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQ 125
           +++ +A  +G PF     ++F E+ +VG    +I     +    A +I+     D    +
Sbjct: 284 LAKAVAGESGVPFFYTAGSEFDEM-FVGIGASRIRKLFENARKQAPSIIFIDEIDACGSK 342

Query: 126 --------ASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEV 169
                    +     ++L  + G T           NT EV  K L      D ++ + +
Sbjct: 343 RTNSSLQPYARQTINQLLQEMDGFTKKEPVIVLGATNTGEVLDKALTRPGRFDTQVQVLL 402

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKV 199
            D       F++  G     ++      K+
Sbjct: 403 PDIQGRKDIFNLYIGKLDINIDNQLNLDKL 432


>gi|254384533|ref|ZP_04999873.1| chaperone protein clpB [Streptomyces sp. Mg1]
 gi|194343418|gb|EDX24384.1| chaperone protein clpB [Streptomyces sp. Mg1]
          Length = 861

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQQ+A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRLIGQQEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYSEKHSVARLV 651


>gi|71994521|ref|NP_491165.2| human SPG (spastic paraplegia) family member (spg-7)
           [Caenorhabditis elegans]
 gi|31746566|gb|AAF60660.2| Human spg (spastic paraplegia) protein 7, partially confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 782

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 294 DVAGCEEAKIEIMEFV-NFLKNPQQYKDLGAKI-PKGAILTGPPGTGKTLLAKATAGEAN 351

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PFI V  ++F E+ +VG     V  +       +  I+     D V
Sbjct: 352 VPFITVSGSEFLEM-FVGVGPARVRDMFSMARKNSPCILFIDEIDAV 397


>gi|296535580|ref|ZP_06897761.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
 gi|296264096|gb|EFH10540.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957]
          Length = 622

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   R +   L+   R  +L A +     PK ILLVGP G GKT ++R +A
Sbjct: 156 DDVAGIDEAKAELREIVDFLKQPERYGRLGARI-----PKGILLVGPPGTGKTLVARAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 211 GEAGVSFFSISGSEFVEM-FVGVGAARV-RDLFEQA 244


>gi|312194122|ref|YP_004014183.1| ATP-dependent chaperone ClpB [Frankia sp. EuI1c]
 gi|311225458|gb|ADP78313.1| ATP-dependent chaperone ClpB [Frankia sp. EuI1c]
          Length = 875

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 569 MEDELHTRVIGQDEAVRAVSDAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 623

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 624 ALADFLFDDERAMVRIDMSEYGEKHSVAR 652


>gi|54035806|sp|Q7UM33|CLPB_RHOBA RecName: Full=Chaperone protein ClpB
          Length = 881

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 103/314 (32%), Gaps = 40/314 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AV+ A+R      +  + L+D   P  + L +GPTGVGKT + 
Sbjct: 585 MEERLHQRVVGQDEAVTAVSDAVR------RSRSGLQDPNRPIGSFLFLGPTGVGKTELC 638

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA +     +  +++++++F E            GYVG    +    L +        
Sbjct: 639 KALAEVMFDDESAMVRIDMSEFMERHSVSRLIGAPPGYVGY---EEGGKLTEAVRRRPYA 695

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T         + R    ++  + +     S  I
Sbjct: 696 VILLDEMEKAHPDVFNVLLQVLDDGRLTDG-------QGRTVNFTNTVVVMTSNVGSQVI 748

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                 GG    +    E   K                 +  L + +  R++ +      
Sbjct: 749 QRVTEEGGGEDEMRQAVEDALKARFLPEFLNRIDDTV-IFHPLQQTQIRRIVQLQLEELR 807

Query: 237 SIQMVENYGIVFLD-EFDKIVARDSGNGIGV-------SREGVQRDLLPLVEGSSVSTKY 288
           S            D   D+I         G         RE        +++ S      
Sbjct: 808 SRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTT 867

Query: 289 GSINTDHILFIASG 302
             I+ D   F+ SG
Sbjct: 868 IKIDHDGDQFVFSG 881



 Score = 39.5 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 125/361 (34%), Gaps = 71/361 (19%)

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV---------FRKKLRDG 158
           D A     E   ++ R       EE I + +   T    TR +           ++L   
Sbjct: 533 DSADQTKEEPGDEKRRLLRKEVTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQR 592

Query: 159 EISDKEIDIEVAD-----------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
            +   E    V+D            +  I +F   G   VG   L +  ++VM       
Sbjct: 593 VVGQDEAVTAVSDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAM 652

Query: 208 IRMSVQKCYPE-------------LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
           +R+ + +                 +  +E  +L        ++++    Y ++ LDE +K
Sbjct: 653 VRIDMSEFMERHSVSRLIGAPPGYVGYEEGGKL-------TEAVRR-RPYAVILLDEMEK 704

Query: 255 ---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS--GA 303
                    +   D G         V      +V  S+V ++     T+          A
Sbjct: 705 AHPDVFNVLLQVLDDGRLTDGQGRTVNFTNTVVVMTSNVGSQVIQRVTEEGGGEDEMRQA 764

Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL---MKTEGIIL 360
              +  A  LPE   R    V    L ++  R I+        LQ +EL   +   G+  
Sbjct: 765 VEDALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQ-------LQLEELRSRLAANGLSF 817

Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA----SDLQEKTVVIDA 416
           + T+ +ID +A+V  +        GAR L+ V++R +++   SA    S  +  T+ ID 
Sbjct: 818 EITDAAIDQIAEVGYD-----PAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDH 872

Query: 417 E 417
           +
Sbjct: 873 D 873


>gi|85709773|ref|ZP_01040838.1| ATPase [Erythrobacter sp. NAP1]
 gi|85688483|gb|EAQ28487.1| ATPase [Erythrobacter sp. NAP1]
          Length = 801

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   + GQ +A   ++ A++         A LRD   P  + L  GPTGVGKT ++R+LA
Sbjct: 466 LKHVVFGQDEAITRLSTAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTEVARQLA 519

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            + G    + +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 SIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHC 569


>gi|116510861|ref|YP_808077.1| FtsH-2 peptidase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106515|gb|ABJ71655.1| membrane protease FtsH catalytic subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 695

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 194 DVAGSEEEKQELVEVVDFLKNPKKYHDLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 249 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 281


>gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC
           33331]
          Length = 682

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +A   +           Q PA  +     +PK +LL GP G GKT ++R +A  
Sbjct: 174 DVAGSDEAVEEL----YEIKEFLQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLARAVAGE 229

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 230 AGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|229530442|ref|ZP_04419830.1| cell division protein FtsH [Vibrio cholerae 12129(1)]
 gi|229332215|gb|EEN97703.1| cell division protein FtsH [Vibrio cholerae 12129(1)]
 gi|327483439|gb|AEA77846.1| Cell division protein FtsH [Vibrio cholerae LMA3894-4]
          Length = 651

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|217970151|ref|YP_002355385.1| ATP-dependent metalloprotease FtsH [Thauera sp. MZ1T]
 gi|217507478|gb|ACK54489.1| ATP-dependent metalloprotease FtsH [Thauera sp. MZ1T]
          Length = 630

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVAELVEFLRDPSKFQKLGGRI-----PKGVLMVGSPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|225016527|ref|ZP_03705719.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
 gi|224950756|gb|EEG31965.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum
           DSM 5476]
          Length = 662

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ YVG    ++ RDL + A
Sbjct: 208 RIPKGVLLIGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASRV-RDLFEQA 265

Query: 111 INI 113
              
Sbjct: 266 KKN 268


>gi|254482507|ref|ZP_05095746.1| ATP-dependent metallopeptidase HflB subfamily protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037198|gb|EEB77866.1| ATP-dependent metallopeptidase HflB subfamily protein [marine gamma
           proteobacterium HTCC2148]
          Length = 638

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  R Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGVDEAKEDVQELVEFLRDPSRFQKLGGRI-----PRGVLMVGQPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 245


>gi|213584090|ref|ZP_03365916.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 224

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +  +I +     + G  +AK  VA  +   + R+          +PK +L+VGP G GK
Sbjct: 142 LTEDQIKTTF-ADVAGCDEAKEEVAELVE--YLREPSRFQKLGGKIPKGVLMVGPPGTGK 198

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI 92
           T +++ +A  A  PF  +  + F E+
Sbjct: 199 TLLAKAIAGEAKVPFFTISGSDFVEM 224


>gi|148556033|ref|YP_001263615.1| ATPase [Sphingomonas wittichii RW1]
 gi|148501223|gb|ABQ69477.1| ATPase AAA-2 domain protein [Sphingomonas wittichii RW1]
          Length = 859

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEDELGKRVIGQKDAIEAVSRAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  +++++++F E   V R
Sbjct: 617 KALAGFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|319786186|ref|YP_004145661.1| ATP-dependent chaperone ClpB [Pseudoxanthomonas suwonensis 11-1]
 gi|317464698|gb|ADV26430.1| ATP-dependent chaperone ClpB [Pseudoxanthomonas suwonensis 11-1]
          Length = 861

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ +A RAV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQQLHRRVVGQDEAIRAVSDAVR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KGLAEFLFDSAEAMVRIDMSEFMEKHSVAR 645


>gi|299066493|emb|CBJ37683.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CMR15]
          Length = 628

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|260171830|ref|ZP_05758242.1| metalloprotease FtsH [Bacteroides sp. D2]
 gi|315920142|ref|ZP_07916382.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694017|gb|EFS30852.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 716

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|149411942|ref|XP_001511408.1| PREDICTED: similar to paired box 9 [Ornithorhynchus anatinus]
          Length = 749

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 271 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 325

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + ++  + A  IV     D V ++
Sbjct: 326 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARNRAPCIVYIDEIDAVGKK 378


>gi|126656220|ref|ZP_01727604.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126622500|gb|EAZ93206.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 621

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   +   + A +     PK +LL+GP G GKT +++ +A 
Sbjct: 174 DVAGIDEAKEELQEVVTFLKESEKFTAIGAKI-----PKGVLLIGPPGTGKTLLAKAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F E+ +VG     V  + +   + A  ++     D V
Sbjct: 229 EAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLIFIDEIDAV 277


>gi|113477219|ref|YP_723280.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110168267|gb|ABG52807.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 613

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K      P+  V+  D  + G + AK     V   L+N  R   + A +     PK +LL
Sbjct: 144 KARVQMEPQTQVTFSD--VAGIEQAKLELTEVVDFLKNADRFTAIGAKI-----PKGVLL 196

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           VGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 197 VGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|291569833|dbj|BAI92105.1| cell division protein FtsH [Arthrospira platensis NIES-39]
          Length = 612

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  ++     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGIEQAKLELSEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|220935007|ref|YP_002513906.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996317|gb|ACL72919.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 753

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L+  + GQ +A   +A A++              +    + L  GPTGVGKT
Sbjct: 450 TLKNLERNLNMVVFGQDEAISTLAAAIK-----MARSGLGDGQKPIGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LA L G   ++ +++++ E            GYVG +   ++ D +    +
Sbjct: 505 EVTRQLADLLGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDEGGLLTDAILKHPH 560


>gi|149201484|ref|ZP_01878459.1| ATPase AAA-2 [Roseovarius sp. TM1035]
 gi|149145817|gb|EDM33843.1| ATPase AAA-2 [Roseovarius sp. TM1035]
          Length = 872

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L R +IGQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEANLHRRVIGQNTAVKAVANAVR------RARAGLNDEGRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + +A       +  +++++++F E            GYVG +      E + R    V +
Sbjct: 615 KAVAEFLFDDDSAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQVVL 674

Query: 112 NIVRESRRDEV 122
               E    EV
Sbjct: 675 FDEVEKAHPEV 685


>gi|134103621|ref|YP_001109282.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004842|ref|ZP_06562815.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916244|emb|CAM06357.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 860

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   ++GQ +A RAV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 564 MEDELSARVVGQAEAVRAVSDAV-----RRARAGVSDPDRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA          +++++++++E            GYVG +    + + V      V   
Sbjct: 619 ALAGFLFDDDRAMVRIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTESVRRRPYSV--V 676

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L AL
Sbjct: 677 LFDEV-EKAHQDVFDVLLQAL 696


>gi|78779742|ref|YP_397854.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9312]
 gi|78713241|gb|ABB50418.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 620

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|86140538|ref|ZP_01059097.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
 gi|85832480|gb|EAQ50929.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
          Length = 657

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 200 KDVAGLEGAKEEVQEIVDFLKNPDKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 255 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 288


>gi|297680434|ref|XP_002817996.1| PREDICTED: fidgetin-like protein 1-like isoform 1 [Pongo abelii]
 gi|297680436|ref|XP_002817997.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Pongo abelii]
          Length = 674

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELITNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|296446321|ref|ZP_06888267.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylosinus
           trichosporium OB3b]
 gi|296256222|gb|EFH03303.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylosinus
           trichosporium OB3b]
          Length = 820

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R + GQ  A  A+  A++              E      L  GPTGVGKT  +R
Sbjct: 466 LDETLKRVVYGQDKAVTALTSAIK-----LARAGLRDPEKPIGCYLFSGPTGVGKTEAAR 520

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 521 QLATSLGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHC 573


>gi|226357380|ref|YP_002787120.1| cell division protease FtsH [Deinococcus deserti VCD115]
 gi|226319370|gb|ACO47366.1| putative cell division protease ftsH [Deinococcus deserti VCD115]
          Length = 626

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQDLQEVVDFLRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  P+  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 EARVPYFSLSGSDFVEM-FVGVGAARV-RDLFEQARKH 248


>gi|149376384|ref|ZP_01894147.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
 gi|149359398|gb|EDM47859.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
          Length = 756

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++              E      L  GPTGVGKT +
Sbjct: 453 RNLERDLKMVVFGQDPAIESLSTAIK-----LARAGLKAPEKPEGAFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA++ G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 TKQLAKVLGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTESVSKHPHC 562


>gi|149038454|gb|EDL92814.1| AFG3(ATPase family gene 3)-like 1 (yeast) (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 427

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 175 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAK 232

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 233 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 284

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             L G++   NT     + L + +  +   ++ V   ++     D 
Sbjct: 285 GHLGGQSEQENTLN---QMLVEMDGFNSTTNVVVLAGTNRPDILDP 327


>gi|115911530|ref|XP_783737.2| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
 gi|115955183|ref|XP_001188077.1| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
          Length = 603

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+ +   +     R  +   LR    PK +LL GP G GKT I + +A  +
Sbjct: 328 DDIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGP--PKGLLLFGPPGTGKTLIGKCIASQS 385

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 386 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCHQ 420



 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 114/340 (33%), Gaps = 28/340 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+ +   +     R  +   LR    PK +LL GP G GKT I+   ++  
Sbjct: 202 DDIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGP--PKGLLLFGPPGTGKTLIAPN-SKFV 258

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
             P +  E    +  GY   +          ++ N  +E   DE       N E ++++ 
Sbjct: 259 P-PVLNKEEADNSMGGYKPPSRNGSGGQSGSMSNNNNQEEPTDER----LKNIEPKMVE- 312

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE--- 194
           LV      +   +    +   E + K I   V         F    G   G+L       
Sbjct: 313 LVMSEIMDHGPPIHWDDIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGLLLFGPPGT 372

Query: 195 ---LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
              L  K + S                    E ++++        ++       ++F+DE
Sbjct: 373 GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV----RALFAVARCHQPAVIFIDE 428

Query: 252 FDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTDHILFIASGAFH--VS 307
            D ++++ S +    SR      L+ L   ++ S +   I   T+    I   A    V 
Sbjct: 429 IDSLLSQRSNDEHESSRRIKTEFLVQLDGATTCSDERLLIVGATNRPQEIDEAARRRLVK 488

Query: 308 RPADLLPEIQGRFPVRVHL-----KSLNKSDFRLILTDTE 342
           R    LP+   R  +   L      SL   D   I   TE
Sbjct: 489 RLYIPLPDSSARGQIVTSLLTQQSHSLVDHDLDSICQKTE 528


>gi|56479246|ref|YP_160835.1| ClpB protein [Aromatoleum aromaticum EbN1]
 gi|56315289|emb|CAI09934.1| ClpB protein [Aromatoleum aromaticum EbN1]
          Length = 860

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A R VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 563 KMEERLHQRVVGQDEAVRLVADAIR------RSRAGLSDENRPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 617 CKTLAEFLFDSEEHLIRIDMSEFMEKHSVAR 647


>gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
           MJ1494
 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 371

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I +    +  + P  L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 126 IIGQEEAKKKCRIIM----KYLENPK-LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            FI V+  +      VG +  ++IR+L   A
Sbjct: 181 SFILVKAPELIGEH-VG-DASKMIRELYQRA 209


>gi|67924655|ref|ZP_00518065.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67853505|gb|EAM48854.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 661

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 209 DVAGAEEAKTELVEIVEFLKNPDRFSRIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 263

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A   F  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 264 EADVTFFSISASEFVEL-FVGTGAARV-RDLFEQAKKQ 299


>gi|331268352|ref|YP_004394844.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
 gi|329124902|gb|AEB74847.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum
           BKT015925]
          Length = 662

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L++  +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 167 KEVAGADEEKAELEEIVDFLKDPNKYLDMGARI-----PKGILLVGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 222 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 258


>gi|326335237|ref|ZP_08201432.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692508|gb|EGD34452.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 639

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 194 QDVAGLEGAKEEVQEIVEFLKNPEKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 249 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFRQA 282


>gi|325518654|gb|EGC98292.1| cell division protease [Burkholderia sp. TJI49]
          Length = 339

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LRN  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 45  DDIAGIDEAKAELQQIVAFLRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVA 99

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 100 GEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 133


>gi|317502306|ref|ZP_07960475.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089910|ref|ZP_08338802.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896262|gb|EFV18364.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403142|gb|EGG82703.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 613

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILL 58
           K     +  + +      + G Q+ K  +A  +   +   +  Q+ A +     PK +LL
Sbjct: 149 KSRARMTNHDEIKVTFANVAGLQEEKEELAEIVDFLKAPKKYVQVGARI-----PKGVLL 203

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVR 115
            GP G GKT +++ +A  AG PF  +  + F E+ +VG     V  + +D    A  I+ 
Sbjct: 204 EGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFQDAKKNAPCIIF 262

Query: 116 ESRRDEV 122
               D V
Sbjct: 263 IDEIDAV 269


>gi|288918778|ref|ZP_06413124.1| ATP-dependent chaperone ClpB [Frankia sp. EUN1f]
 gi|288349863|gb|EFC84094.1| ATP-dependent chaperone ClpB [Frankia sp. EUN1f]
          Length = 870

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ DA R V+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MEEELHRRVIGQDDAVRIVSDAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            +A          ++++++++ E   V R
Sbjct: 623 AVADFLFDDERAVVRIDMSEYAEKHSVAR 651


>gi|322420024|ref|YP_004199247.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320126411|gb|ADW13971.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 612

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++  +  +L   +     PK +LL+GP G GKT ++R +A
Sbjct: 160 EDVAGIEEAKDELEEIISFLKDPKKFTKLGGRI-----PKGVLLMGPPGTGKTLLARAIA 214

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV-REQA--- 126
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V R +    
Sbjct: 215 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKSAPCIIFIDEIDAVGRHRGAGL 272

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  +          N  +V    L      D+++ +   D 
Sbjct: 273 GGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPRPDV 332

Query: 173 SSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDE--SDRLID 229
                   +    +    ++   + ++         +   V +      R E     +ID
Sbjct: 333 KGREMILKVHCKKTPLAPDVDLGVVARGTPGFSGADLSNVVNEAALLAARKEKSMVEMID 392

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDK 254
            D      +  VE   +V  DE  K
Sbjct: 393 FDDAKDKVLMGVERRSMVISDEEKK 417


>gi|257068481|ref|YP_003154736.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
 gi|256559299|gb|ACU85146.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
          Length = 879

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 99/257 (38%), Gaps = 28/257 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEQELHKRVIGQDEAIKAISRAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F E            GYVG +       L +        
Sbjct: 560 KALAEFLFGDEESLIQLDMSEFGEKHTASRLFGSPPGYVGYD---EGGQLTEKVRRKPFS 616

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A ++    +L  L     T +   V   K     ++      ++A   S  
Sbjct: 617 VVLFDEVEKAHVDIFNSLLQILEDGRLTDSQGRVVDFKNTIIIMTTNLGTRDIAKGVS-- 674

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDMDTVH 234
             F   GG S     +     + +    K +    V     +P+L ++E   ++D++   
Sbjct: 675 IGFTAGGGLSTDYERMKSKVHEELKQHFKPEFLNRVDDVVVFPQLSKEEIVEIVDLEIAK 734

Query: 235 RDSIQMVENYGIVFLDE 251
            ++     +  +    E
Sbjct: 735 LETRLRDRDMSLTLSSE 751


>gi|229525290|ref|ZP_04414695.1| cell division protein FtsH [Vibrio cholerae bv. albensis VL426]
 gi|229338871|gb|EEO03888.1| cell division protein FtsH [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 244


>gi|254448788|ref|ZP_05062245.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [gamma
           proteobacterium HTCC5015]
 gi|198261629|gb|EDY85917.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [gamma
           proteobacterium HTCC5015]
          Length = 460

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L+R + GQ +A + +  A++              E    + L  GPTGVGKT
Sbjct: 141 TLRRLEDNLNRVVFGQPEAIQQLTTAIK-----LARSGLREGEKPIGSFLFAGPTGVGKT 195

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            ++R+LA   G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 196 EVTRQLAMNLGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAVTKTPHC 252


>gi|126696787|ref|YP_001091673.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301]
 gi|126543830|gb|ABO18072.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301]
          Length = 620

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A
Sbjct: 170 DDVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 228 EVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|17546245|ref|NP_519647.1| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum
           GMI1000]
 gi|17428542|emb|CAD15228.1| probable atp-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 628

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|125973732|ref|YP_001037642.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           thermocellum ATCC 27405]
 gi|256005534|ref|ZP_05430495.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 2360]
 gi|281417889|ref|ZP_06248909.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum JW20]
 gi|125713957|gb|ABN52449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           thermocellum ATCC 27405]
 gi|255990514|gb|EEU00635.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 2360]
 gi|281409291|gb|EFB39549.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum JW20]
 gi|316940074|gb|ADU74108.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           thermocellum DSM 1313]
          Length = 776

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   I GQ  A   V  A+    +R +   +  +E    ++L VGPTGVGKT +
Sbjct: 477 KNLDVKLKSTIFGQDKAIDTVVQAI----KRSRAGFN-ENEKPVASLLFVGPTGVGKTEL 531

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++L+   G PFI+ +++++ E            GYVG     ++ D +    + 
Sbjct: 532 AKQLSLHLGIPFIRFDMSEYQEKHTVSRLIGAPPGYVGYEEGGLLTDAIRKTPHC 586


>gi|269792459|ref|YP_003317363.1| ATP-dependent metalloprotease FtsH [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100094|gb|ACZ19081.1| ATP-dependent metalloprotease FtsH [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 630

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  R  +L A      +P+ +LL+G  G GKT ++R +A 
Sbjct: 157 DVAGCDEAKEELKEVVEFLKDPGRFARLGAK-----VPRGVLLLGAPGTGKTLLARAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 EADVPFFSISGSDFVEM-FVGVGAARV-RDLFEQA 244


>gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 610

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +  +    L   + PK ILLVGP G GKT ++R +A  A
Sbjct: 156 DDVAGVDEAKAELQEVVE-FLKDPEAYGKLGAHV-PKGILLVGPPGTGKTLLARAVAGEA 213

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G  F  +  ++F E+ +VG    ++ RDL D A
Sbjct: 214 GVTFFSISGSEFVEM-FVGVGAARV-RDLFDQA 244


>gi|255071085|ref|XP_002507624.1| predicted protein [Micromonas sp. RCC299]
 gi|226522899|gb|ACO68882.1| predicted protein [Micromonas sp. RCC299]
          Length = 764

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 21/118 (17%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L + +IGQ+ A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 417 QLEAQLHQRVIGQEQAVTSVAEAV------QRSRADLSDPNGPIASFMFLGPTGVGKTEL 470

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++ LA          I+++++++ E            GYVG +   ++ D V      
Sbjct: 471 AKALADYLFNSDNALIRLDMSEYMEKHSVARLIGAPPGYVGYDEGGMLTDAVRQKPYS 528


>gi|296488727|gb|DAA30840.1| fidgetin-like [Bos taurus]
          Length = 974

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELDR-------YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  PR I       +D+        I G + AK  +   +     R  +   LR    PK
Sbjct: 678 NLEPRMIELIMNEIMDQGPPVNWEDIAGVEFAKTTIKEIVVWPMLRPDIFTGLRGP--PK 735

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  AGA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 736 GILLFGPPGTGKTLIGKCIASQAGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 793



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 79/262 (30%), Gaps = 30/262 (11%)

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           G  G  ++   +           + R   +  +        I+D                
Sbjct: 650 GDPGGGMQYKPQGAGTADPAHPMDERLKNLEPRMIELIMNEIMDQGPPVN---------W 700

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + +   E +   I   V         F    G   GI     L     G+G+    +   
Sbjct: 701 EDIAGVEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGI-----LLFGPPGTGKTLIGKCIA 755

Query: 213 QKCYPELMRDESDRLIDM-----DTVHRD--SIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +         +  L        + + R   ++   +   ++F+DE D ++++       
Sbjct: 756 SQAGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE 815

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSI--NTDHILFIASGAFH--VSRPADLLPEIQGRFP 321
            SR      L+ L   ++ S     +   T+    I   A    V R    LPE   R  
Sbjct: 816 SSRRIKTEFLVQLDGAATSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 875

Query: 322 VRVHLKS-----LNKSDFRLIL 338
           + V+L S     L++ +  L++
Sbjct: 876 IVVNLMSKEQCCLSEEELELVV 897


>gi|332000025|ref|NP_001193643.1| fidgetin-like protein 1 [Bos taurus]
          Length = 677

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELDR-------YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  PR I       +D+        I G + AK  +   +     R  +   LR    PK
Sbjct: 381 NLEPRMIELIMNEIMDQGPPVNWEDIAGVEFAKTTIKEIVVWPMLRPDIFTGLRGP--PK 438

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  AGA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 439 GILLFGPPGTGKTLIGKCIASQAGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 496



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 79/262 (30%), Gaps = 30/262 (11%)

Query: 93  GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           G  G  ++   +           + R   +  +        I+D                
Sbjct: 353 GDPGGGMQYKPQGAGTADPAHPMDERLKNLEPRMIELIMNEIMDQGPPVN---------W 403

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + +   E +   I   V         F    G   GI     L     G+G+    +   
Sbjct: 404 EDIAGVEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGI-----LLFGPPGTGKTLIGKCIA 458

Query: 213 QKCYPELMRDESDRLIDM-----DTVHRD--SIQMVENYGIVFLDEFDKIVARDSGNGIG 265
            +         +  L        + + R   ++   +   ++F+DE D ++++       
Sbjct: 459 SQAGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE 518

Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSI--NTDHILFIASGAFH--VSRPADLLPEIQGRFP 321
            SR      L+ L   ++ S     +   T+    I   A    V R    LPE   R  
Sbjct: 519 SSRRIKTEFLVQLDGAATSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 578

Query: 322 VRVHLKS-----LNKSDFRLIL 338
           + V+L S     L++ +  L++
Sbjct: 579 IVVNLMSKEQCCLSEEELELVV 600


>gi|53712067|ref|YP_098059.1| metalloprotease FtsH [Bacteroides fragilis YCH46]
 gi|60680261|ref|YP_210405.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis NCTC 9343]
 gi|52214932|dbj|BAD47525.1| AAA-metalloprotease FtsH with ATPase domain [Bacteroides fragilis
           YCH46]
 gi|60491695|emb|CAH06447.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis NCTC 9343]
 gi|301161788|emb|CBW21328.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis 638R]
          Length = 664

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 177 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 234

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 235 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 293

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 294 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 353

Query: 176 ISNFDIP 182
              F + 
Sbjct: 354 KEVFGVH 360


>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
           Methanococcus jannaschii
          Length = 373

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           IIGQ++AK+   I +    +  + P  L  E  PKN+L  GP G GKT ++R LA    +
Sbjct: 128 IIGQEEAKKKCRIIM----KYLENPK-LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 182

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            FI V+  +      VG +  ++IR+L   A
Sbjct: 183 SFILVKAPELIGEH-VG-DASKMIRELYQRA 211


>gi|327449662|gb|EGE96316.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL013PA2]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|317969090|ref|ZP_07970480.1| cell division protein FtsH3 [Synechococcus sp. CB0205]
          Length = 634

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK+ +   + +  +  +    +   + PK +LLVGP G GKT +S+ +A  AG
Sbjct: 179 DVAGVDEAKQELTEIV-DFLKSSERYTAIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAG 236

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 237 VPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 266


>gi|291414803|ref|XP_002723648.1| PREDICTED: spastic paraplegia 7 [Oryctolagus cuniculus]
          Length = 777

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 293 RDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 347

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 348 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 400


>gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 214 NDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 268

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 269 GEAGVPFFSLSGSEFIEM-FVGIGASRV-RDLFNKA 302


>gi|254582218|ref|XP_002497094.1| ZYRO0D15290p [Zygosaccharomyces rouxii]
 gi|238939986|emb|CAR28161.1| ZYRO0D15290p [Zygosaccharomyces rouxii]
          Length = 727

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   +    + ++  A      +P+  +L GP G GKT +++  A  A
Sbjct: 254 QDVAGCNEAKQEIMEFVHFLKKPEKYTALGA--KIPRGAILSGPPGTGKTLLAKATAGEA 311

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF+ V  ++F E+ +VG    ++ RD+ + A
Sbjct: 312 GVPFLSVSGSEFVEM-FVGVGASRV-RDMFEQA 342


>gi|148926137|ref|ZP_01809823.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845616|gb|EDK22708.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 371

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206
             +++            G  +   L  K    GR++
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRRR 357


>gi|145341034|ref|XP_001415621.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
 gi|144575844|gb|ABO93913.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus
           lucimarinus CCE9901]
          Length = 632

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK      +    +R +    +  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 166 DDVAGVKEAKNDFMEIVE-FLKRPERFTAVGAKI-PKGCLLVGPPGTGKTLLAKAIAGEA 223

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 224 GVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFVDEIDAV 270


>gi|319426623|gb|ADV54697.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           putrefaciens 200]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   ++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIETLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLATCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|120598598|ref|YP_963172.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. W3-18-1]
 gi|120558691|gb|ABM24618.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. W3-18-1]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   ++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIETLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLATCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|146293323|ref|YP_001183747.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           putrefaciens CN-32]
 gi|145565013|gb|ABP75948.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           putrefaciens CN-32]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   ++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIETLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLATCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|319408391|emb|CBI82046.1| Clp protease subunit [Bartonella schoenbuchensis R1]
          Length = 786

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   + GQ  A   +  +++              E    + L  GPTGVGKT +++
Sbjct: 457 LEKELKHVVYGQDQAIGVLVSSIK-----LARAGLRESEKPIGSYLFSGPTGVGKTEVAK 511

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA   G   ++ +++++ E            GYVG +   ++ D VD   +
Sbjct: 512 QLASSLGIELLRFDMSEYMERHTVARLIGAPPGYVGFDQGGLLTDAVDQNPH 563


>gi|226324146|ref|ZP_03799664.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758]
 gi|225207695|gb|EEG90049.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758]
          Length = 578

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+ K  +A  +   ++  +  Q+ A +     PK +LL GP G GKT ++R +A  
Sbjct: 137 VAGLQEEKEELAEIVDFLKSPGKYTQVGARI-----PKGVLLEGPPGTGKTLLARAIAGE 191

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 192 AGVPFFTISGSDFVEM-FVGVGASRVRDLFEDAKKNAPCIIFIDEIDAV 239


>gi|218188676|gb|EEC71103.1| hypothetical protein OsI_02887 [Oryza sativa Indica Group]
          Length = 796

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           +L  +  P + V    + + G  DAK+ +      L+N  +  +L   L     PK ILL
Sbjct: 340 ELNKDIMPEKNVKTF-KDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKL-----PKGILL 393

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVR 115
            G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  IV 
Sbjct: 394 TGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIVF 452

Query: 116 ESRRDEV 122
               D V
Sbjct: 453 IDEIDAV 459


>gi|209525311|ref|ZP_03273853.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
 gi|209494326|gb|EDZ94639.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328]
          Length = 612

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  ++     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGIEQAKLELSEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1]
 gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax]
          Length = 896

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 116/301 (38%), Gaps = 39/301 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  ++K  +      +RNR + Q++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 161 EEIAGIDESKLELLEVVDFIRNREKYQEMGARM-----PKGVLLVGPPGSGKTMLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S    
Sbjct: 216 TEANVPYIYTSGPEFIEI-YVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRS---- 270

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                  V         +   + L + +     I I V   ++ I   D       G  +
Sbjct: 271 ----SGSVNGAGQREHDQTLNQLLVEMDGFSNSIHIMVIGATNRIDTLDS-ALLRPGRFD 325

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL---------IDMDTVHRDSIQMV- 241
                     +GRK+ + + ++K   +L  ++ D++          D++ V  ++  +  
Sbjct: 326 RIVYVPLPDVNGRKRILEIYIKKIKSDLKAEDIDKIARLTPGFSGADLENVVNEATILAT 385

Query: 242 -ENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDH 295
                +V + E     DK+        +  S    QR +    E G ++   +    TD 
Sbjct: 386 RNKKSVVTIGELFEARDKVSMGPERKSLRQSDH--QRRITAYHEAGHAIVAYFLQPKTDP 443

Query: 296 I 296
           I
Sbjct: 444 I 444


>gi|15672003|ref|NP_266177.1| hypothetical protein L0204 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490520|ref|YP_003352500.1| cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|1169754|sp|P46469|FTSH_LACLA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12722858|gb|AAK04119.1|AE006241_8 cell division protein FtsH [Lactococcus lactis subsp. lactis
           Il1403]
 gi|44027|emb|CAA48877.1| Tma protein [Lactococcus lactis]
 gi|281374338|gb|ADA63871.1| Cell division protein FtsH [Lactococcus lactis subsp. lactis KF147]
 gi|326405619|gb|ADZ62690.1| cell division protease FtsH [Lactococcus lactis subsp. lactis CV56]
          Length = 695

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 194 DVAGSEEEKQELVEVVDFLKNPKKYHDLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 249 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 281


>gi|150014992|ref|YP_001307246.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
 gi|149901457|gb|ABR32290.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB
           8052]
          Length = 602

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K     +   L+   +  Q+ A +     PK +LLVGP G GKT +++ +A
Sbjct: 159 EDIAGADEEKAELEEIVEFLKLPSKYIQIGARI-----PKGVLLVGPPGTGKTLLAKAIA 213

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +  +    +  IV     D V
Sbjct: 214 GEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEEAKKNSPCIVFIDEIDAV 263


>gi|323493246|ref|ZP_08098375.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio brasiliensis
           LMG 20546]
 gi|323312512|gb|EGA65647.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio brasiliensis
           LMG 20546]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+ +LD      + GQ DA   ++ A++             D     + L  GPTG
Sbjct: 446 SDKEILQKLDEKMKMLVFGQDDAIDVLSEAIK-----LTRAGLGADHKPVGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 501 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 560

Query: 113 I 113
            
Sbjct: 561 S 561


>gi|315223577|ref|ZP_07865432.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea F0287]
 gi|314946493|gb|EFS98487.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea F0287]
          Length = 652

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     P+  LLVGP G GKT +++ +A
Sbjct: 194 QDVAGLEGAKEEVQEIVDFLKNPDKYTSLGGKI-----PRGALLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA------------INIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RDL   A            I+ +  +R   V
Sbjct: 249 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQAKEKSPCIIFIDEIDAIGRARGKNV 306

Query: 123 REQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   L               A +N  ++  K L      D++I +E+ +
Sbjct: 307 MTGANDERENTLNQLLTEMDGFGSHTNVIVLAATNRADILDKALMRAGRFDRQIYVELPN 366

Query: 172 TSSDISNFDIP 182
            +     F++ 
Sbjct: 367 LNERKQIFEVH 377


>gi|253563894|ref|ZP_04841351.1| metalloprotease FtsH [Bacteroides sp. 3_2_5]
 gi|265765402|ref|ZP_06093677.1| metalloprotease FtsH [Bacteroides sp. 2_1_16]
 gi|251947670|gb|EES87952.1| metalloprotease FtsH [Bacteroides sp. 3_2_5]
 gi|263254786|gb|EEZ26220.1| metalloprotease FtsH [Bacteroides sp. 2_1_16]
          Length = 664

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 177 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 234

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 235 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 293

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 294 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 353

Query: 176 ISNFDIP 182
              F + 
Sbjct: 354 KEVFGVH 360


>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 371

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 8   SPREIVSELDR-----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +P++++    +      IIGQ++AK+   I +    +  + P  L  E  PKN+L  GP 
Sbjct: 109 TPKKVIRTQFKKAKFSEIIGQEEAKKKCRIIM----KYLENPK-LFGEWAPKNVLFYGPP 163

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LA    + FI V+  +      VG +  ++IR+L   A
Sbjct: 164 GTGKTLMARALATETNSSFILVKAPELIGEH-VG-DASKMIRELYQRA 209


>gi|213962449|ref|ZP_03390711.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
 gi|213954775|gb|EEB66095.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
          Length = 655

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     P+  LLVGP G GKT +++ +A
Sbjct: 194 QDVAGLEGAKEEVQEIVDFLKNPDKYTSLGGKI-----PRGALLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 249 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 282


>gi|170747221|ref|YP_001753481.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653743|gb|ACB22798.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium radiotolerans JCM 2831]
          Length = 828

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R + GQ +A  A+  A++         A LRD   P  + L  GPTGVGKT  +
Sbjct: 466 LTENLKRVVYGQPNAIEALTSAIK------LARAGLRDPDKPIGSYLFAGPTGVGKTEAA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 520 KQLAASLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGIDQHPHC 573


>gi|114047223|ref|YP_737773.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. MR-7]
 gi|113888665|gb|ABI42716.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. MR-7]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLASCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|51892776|ref|YP_075467.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|51856465|dbj|BAD40623.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 493

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 12/219 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+ +  A+     R+Q+       L  K ILL GP G GKT +++  A   
Sbjct: 53  EDIGGQAAAKKELLEAIEFIANREQIARMGIRPL--KGILLTGPPGTGKTLLAKAAAHHT 110

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ Y G   +++ R+L   A    RE  R E +  A I  +E  ++ 
Sbjct: 111 DSVFLAAAGSEFVEM-YAGVGAQRV-RELFRRA----RELARKERKRSAIIFIDE--IEV 162

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L  +  + +T   + + L         I ++       ++  +        +L       
Sbjct: 163 LGARRGSHSTHMEYDQTLNQLLTEMDGIAVDEEIQVLVMAATNRADMMDPALLRPGRFDR 222

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
            V      K+ R+++ + +        D  +D++ + R 
Sbjct: 223 MVNVDLPDKEARLAILRLHTRQKPLGDD--VDLEAIARQ 259


>gi|28952053|ref|NP_240199.2| cell division protein FtsH [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|20138164|sp|P57462|FTSH_BUCAI RecName: Full=ATP-dependent zinc metalloprotease FtsH
          Length = 611

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAV 256


>gi|83747762|ref|ZP_00944796.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|207723996|ref|YP_002254394.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|207742906|ref|YP_002259298.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|300703814|ref|YP_003745416.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           ATPase and peptidase m41 families [Ralstonia
           solanacearum CFBP2957]
 gi|83725534|gb|EAP72678.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|206589204|emb|CAQ36166.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|206594301|emb|CAQ61228.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|299071477|emb|CBJ42799.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CFBP2957]
          Length = 628

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|116747998|ref|YP_844685.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697062|gb|ABK16250.1| membrane protease FtsH catalytic subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 652

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
              L   + G  +AK  +      L++  +  +L   +     PK +LLVG  G GKT +
Sbjct: 149 KKVLFNDVAGIDEAKEELQEIVEFLKDPRKFTRLGGRI-----PKGVLLVGAPGTGKTLL 203

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
           ++ +A  AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 204 AKAIAGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFMQGKKNAPCIIFIDEIDAV 258


>gi|241114309|ref|YP_002973784.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|240868882|gb|ACS66540.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 696

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  ++  +       R++R           +PK +LLVG  G GKT +++ +
Sbjct: 223 DVAGIDEAKEELSEIVSFLKDPQRYQRLGG-------KIPKGVLLVGAPGTGKTLLAKAV 275

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 276 AGEAGVPFFSMSGSDFVEM-FVGVGAARV-RDLFKQA 310


>gi|189463817|ref|ZP_03012602.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
 gi|189438767|gb|EDV07752.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM
           17393]
          Length = 742

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK     S   + + +   I GQ++A R V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDTTSLETLHARISAKIYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|187928785|ref|YP_001899272.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|310946758|sp|B2UE66|FTSH_RALPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|187725675|gb|ACD26840.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
          Length = 714

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  ++  +       R++R           +PK +LLVG  G GKT +++ +
Sbjct: 241 DVAGIDEAKEELSEIVSFLKDPQRYQRLGG-------KIPKGVLLVGAPGTGKTLLAKAV 293

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 294 AGEAGVPFFSMSGSDFVEM-FVGVGAARV-RDLFKQA 328


>gi|148679759|gb|EDL11706.1| mCG132921, isoform CRA_a [Mus musculus]
          Length = 861

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 389 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 443

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 444 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 496


>gi|262369450|ref|ZP_06062778.1| cell division protein [Acinetobacter johnsonii SH046]
 gi|262315518|gb|EEY96557.1| cell division protein [Acinetobacter johnsonii SH046]
          Length = 630

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +PK +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPSKFKRLGA-----TIPKGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum]
          Length = 690

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             IIGQ  AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 415 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATEC 472

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 473 RATFFSISAASLT-SKYVGEG-EKMVRALFAIA 503


>gi|125622902|ref|YP_001031385.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491710|emb|CAL96629.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069640|gb|ADJ59040.1| putative cell division protein [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 695

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 194 DVAGSEEEKQELVEVVDFLKNPKKYHDLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 249 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 281


>gi|22652856|gb|AAN03852.1|AF512565_1 paraplegin [Mus musculus]
          Length = 781

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++       
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSG 423

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A++N  +V    L      D+ + I++    
Sbjct: 424 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRFDRHVFIDLPTLQ 483

Query: 174 SDISNFD 180
                F+
Sbjct: 484 ERREIFE 490


>gi|88807968|ref|ZP_01123479.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
 gi|88788007|gb|EAR19163.1| cell division protein FtsH2 [Synechococcus sp. WH 7805]
          Length = 616

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|327482314|gb|AEA85624.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 613

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           MPK +LLVGP G GKT ++R +A  A 
Sbjct: 158 DVAGVDEAKDELKEIIE--FLRDPQTYGRLGGRMPKGVLLVGPPGTGKTLLARAVAGEAK 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 216 VPFFSISGSEFVEL-FVGVGAARV-RDLFEQA 245


>gi|260946049|ref|XP_002617322.1| hypothetical protein CLUG_02766 [Clavispora lusitaniae ATCC 42720]
 gi|238849176|gb|EEQ38640.1| hypothetical protein CLUG_02766 [Clavispora lusitaniae ATCC 42720]
          Length = 805

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L ++++GQ +A  AV+ A+     R Q      D+    + + +GPTG GKT ++
Sbjct: 492 DMEVILKQHVVGQDEAIHAVSDAV-----RLQRAGLTSDKRPIASFMFLGPTGTGKTELT 546

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           ++LA       +  I+ ++++F E   V R +      +       + E+ R +
Sbjct: 547 KQLAEFLFNDTSSVIRFDMSEFQEKHTVSRLIGSPPGYVGYEDSGELTEAVRRK 600


>gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1]
 gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1]
          Length = 608

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            E      + + G  + K  +      L++  +  ++ A +     PK +LLVGP G GK
Sbjct: 137 EEKKKVRFKDVAGADEEKNELVEVVEFLKDPRKFSEVGARI-----PKGVLLVGPPGTGK 191

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           T ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 192 TLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 236


>gi|113969988|ref|YP_733781.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. MR-4]
 gi|113884672|gb|ABI38724.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. MR-4]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLASCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
 gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
          Length = 685

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|269101027|ref|YP_003289175.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|310943129|sp|D1J722|FTSH_ECTSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|266631535|emb|CAV31206.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
 gi|270118665|emb|CAT18723.1| Probable chloroplast ATP-dependent protease [Ectocarpus
           siliculosus]
          Length = 661

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRL 73
           L   + G  +AK+     +       ++P          PK +++VGP G GKT +++ +
Sbjct: 193 LFSDVAGIDEAKQEFEEFV----SFLKMPQLFTAVGANPPKGVIIVGPPGTGKTLLAKAI 248

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PFI +  ++F E+ +VG    ++ RDL + A
Sbjct: 249 AGEAGVPFISISGSEFVEM-FVGIGASRV-RDLFETA 283


>gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 620

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +      L+   +  ++ A +     PK +LL GP G GKT ++R +A 
Sbjct: 160 DVAGVDEVKEELQELVEFLKEPRKFSEIGARI-----PKGVLLFGPPGTGKTLLARAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 215 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENAKKN 250


>gi|78185610|ref|YP_378044.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169904|gb|ABB27001.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 617

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 163 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|30248543|ref|NP_840613.1| hflB; ATP-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Nitrosomonas europaea ATCC 19718]
 gi|30138429|emb|CAD84439.1| hflB; ATP-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 643

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  VA     LR+  R Q+L   +     P+ +L+ G  G GKT ++R +A 
Sbjct: 156 DVAGCEEAKEEVAELVEFLRDPSRFQKLGGRI-----PRGVLMCGSPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 246


>gi|329893943|ref|ZP_08269978.1| Cell division protein FtsH [gamma proteobacterium IMCC3088]
 gi|328923398|gb|EGG30715.1| Cell division protein FtsH [gamma proteobacterium IMCC3088]
          Length = 642

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  R Q+L   +     P+ +L+ G  G GKT +++ +A 
Sbjct: 158 DVAGVDEAKEDVQELVEFLRDPSRFQKLGGRI-----PRGVLMSGQPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 248


>gi|298487536|ref|ZP_07005578.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157920|gb|EFH98998.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|302875741|ref|YP_003844374.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|307689172|ref|ZP_07631618.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
 gi|302578598|gb|ADL52610.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B]
          Length = 579

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 32/237 (13%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G ++AK +V      L+N  + ++  A +     PK I+L G  G GKT +++ +A
Sbjct: 149 NDIAGNEEAKESVMDIIDFLKNPQKYREYGARM-----PKGIILYGDPGTGKTLLAKAVA 203

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR--------ESRRDEVREQA 126
             AG PF  +  + F ++ YVG    +I R L   A +  +        ++        A
Sbjct: 204 GEAGVPFYAMSGSDFIQV-YVGVGASRI-RQLFKKARSHGKAVIFIDEIDAIGKARSNSA 261

Query: 127 SINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
           S  ++ER      +L  + G   T         N  ++    L      D+ I+I + D 
Sbjct: 262 SGGSDERDQTLNALLTEMSGFNETEGIIVMAATNRLDILDSALLRPGRFDRHIEITLPDI 321

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           S+     ++            + +S+        K+   V +      +D S  ++D
Sbjct: 322 SAREKILNLHLQNKPHENIKIKEWSQKTSYFSGAKLEHLVNEAAILACKDNSKDILD 378


>gi|254787192|ref|YP_003074621.1| cell division protease ftsH [Teredinibacter turnerae T7901]
 gi|237686727|gb|ACR13991.1| cell division protease ftsH [Teredinibacter turnerae T7901]
          Length = 638

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  R Q+L   +     P+ +L+ GP G GKT +++ +A 
Sbjct: 158 DVAGVDEAKEDVQELVEFLKDPSRFQRLGGRI-----PRGVLMAGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQAKKQ 248


>gi|219681739|ref|YP_002468125.1| cell division protein FtsH [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471439|ref|ZP_05635438.1| cell division protein FtsH [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624582|gb|ACL30737.1| cell division protein FtsH [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAV 256


>gi|327541369|gb|EGF27909.1| protein disaggregation chaperone [Rhodopirellula baltica WH47]
          Length = 881

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 103/314 (32%), Gaps = 40/314 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AV+ A+R      +  + L+D   P  + L +GPTGVGKT + 
Sbjct: 585 MEERLHQRVVGQDEAVTAVSDAVR------RSRSGLQDPNRPIGSFLFLGPTGVGKTELC 638

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA +     +  +++++++F E            GYVG    +    L +        
Sbjct: 639 KALAEVMFDDESAMVRIDMSEFMERHSVSRLIGAPPGYVGY---EEGGKLTEAVRRRPYA 695

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T         + R    ++  + +     S  I
Sbjct: 696 VILLDEMEKAHPDVFNVLLQVLDDGRLTDG-------QGRTVNFTNTVVVMTSNVGSQVI 748

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                 GG    +    E   K                 +  L + +  R++ +      
Sbjct: 749 QRVTEEGGGEDEMRQAVEDALKARFLPEFLNRIDDTV-IFHPLQQTQIRRIVQLQLEELR 807

Query: 237 SIQMVENYGIVFLD-EFDKIVARDSGNGIGV-------SREGVQRDLLPLVEGSSVSTKY 288
           S            D   D+I         G         RE        +++ S      
Sbjct: 808 SRLAANGLSFEISDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTT 867

Query: 289 GSINTDHILFIASG 302
             I+ D   F+ SG
Sbjct: 868 IKIDHDGDQFVFSG 881



 Score = 36.4 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 122/349 (34%), Gaps = 71/349 (20%)

Query: 120 DEVREQASINAEERILDALVGKTATSNTREV---------FRKKLRDGEISDKEIDIEVA 170
           ++ R       EE I + +   T    TR +           ++L    +   E    V+
Sbjct: 545 EKRRLLRKEVTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQRVVGQDEAVTAVS 604

Query: 171 D-----------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE- 218
           D            +  I +F   G   VG   L +  ++VM       +R+ + +     
Sbjct: 605 DAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAMVRIDMSEFMERH 664

Query: 219 ------------LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK---------IVA 257
                       +  +E  +L        ++++    Y ++ LDE +K         +  
Sbjct: 665 SVSRLIGAPPGYVGYEEGGKL-------TEAVRR-RPYAVILLDEMEKAHPDVFNVLLQV 716

Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS--GAFHVSRPADLLPE 315
            D G         V      +V  S+V ++     T+          A   +  A  LPE
Sbjct: 717 LDDGRLTDGQGRTVNFTNTVVVMTSNVGSQVIQRVTEEGGGEDEMRQAVEDALKARFLPE 776

Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL---MKTEGIILDFTEDSIDALAD 372
              R    V    L ++  R I+        LQ +EL   +   G+  + ++ +ID +A+
Sbjct: 777 FLNRIDDTVIFHPLQQTQIRRIVQ-------LQLEELRSRLAANGLSFEISDAAIDQIAE 829

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA----SDLQEKTVVIDAE 417
           V  +        GAR L+ V++R +++   SA    S  +  T+ ID +
Sbjct: 830 VGYD-----PAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDHD 873


>gi|311087277|gb|ADP67357.1| cell division protein FtsH [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAV 256


>gi|309783422|ref|ZP_07678128.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|308917821|gb|EFP63512.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 765

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  ++  +       R++R           +PK +LLVG  G GKT +++ +
Sbjct: 173 DVAGIDEAKEELSEIVSFLKDPQRYQRLGG-------KIPKGVLLVGAPGTGKTLLAKAV 225

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 AGEAGVPFFSMSGSDFVEM-FVGVGAARV-RDLFKQA 260


>gi|255007599|ref|ZP_05279725.1| putative transmembrane AAA-metalloprotease FtsH [Bacteroides
           fragilis 3_1_12]
 gi|313145292|ref|ZP_07807485.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134059|gb|EFR51419.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 675

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 190 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 247

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 248 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 306

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 307 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 366

Query: 176 ISNFDIP 182
              F + 
Sbjct: 367 KEVFGVH 373


>gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 668

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSEEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
 gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
          Length = 672

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L    + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 177 DVAGADEAVEELQEVKEFLEAPAKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 232 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 264


>gi|256820481|ref|YP_003141760.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea DSM
           7271]
 gi|256582064|gb|ACU93199.1| ATP-dependent metalloprotease FtsH [Capnocytophaga ochracea DSM
           7271]
          Length = 652

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     P+  LLVGP G GKT +++ +A
Sbjct: 194 QDVAGLEGAKEEVQEIVDFLKNPDKYTSLGGKI-----PRGALLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA------------INIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RDL   A            I+ +  +R   V
Sbjct: 249 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQAKEKSPCIIFIDEIDAIGRARGKNV 306

Query: 123 REQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   L               A +N  ++  K L      D++I +E+ +
Sbjct: 307 MTGANDERENTLNQLLTEMDGFGSHTNVIVLAATNRADILDKALMRAGRFDRQIYVELPN 366

Query: 172 TSSDISNFDIP 182
            +     F++ 
Sbjct: 367 LNERKQIFEVH 377


>gi|219682294|ref|YP_002468678.1| cell division protein FtsH [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219622027|gb|ACL30183.1| cell division protein FtsH [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086119|gb|ADP66201.1| cell division protein FtsH [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086692|gb|ADP66773.1| cell division protein FtsH [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 611

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 153 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 VPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAV 256


>gi|194017983|ref|ZP_03056590.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
 gi|194010320|gb|EDW19895.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC
           7061]
          Length = 586

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R  A  A
Sbjct: 113 KDVAGADEEKQEL-VEVVEFLKDPRKFAELGARI-PKGVLLVGPPGTGKTLLARASAGEA 170

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           G PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 171 GVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 204


>gi|144227508|gb|AAZ44293.2| cell division protein [Mycoplasma hyopneumoniae J]
 gi|144575319|gb|AAZ53580.2| cell division protein [Mycoplasma hyopneumoniae 7448]
          Length = 715

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A     L+N  +     A +     P+ ILL GP G GKT +++  A 
Sbjct: 230 DVAGNVEAKEEIAEFIDYLKNPTKYAAAGAKI-----PRGILLGGPPGTGKTLLAKATAG 284

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ YVG   +++ R+L   A N 
Sbjct: 285 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKDARND 320


>gi|325106944|ref|YP_004268012.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
 gi|324967212|gb|ADY57990.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
          Length = 656

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
            F P +  +  D  + G +  K   + V   L+N  + Q+L A +     PK ILL+G  
Sbjct: 203 EFKPSDKKTTFDD-VAGMEQPKMELQEVVEFLKNPAKFQRLGAQI-----PKGILLMGSP 256

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G+GKT ++R  A  A  PF  +  ++F ++ +VG     V  + R   + A  I+     
Sbjct: 257 GIGKTLLARATAGEAEVPFYSINGSEFIQM-FVGVGASRVRDLFRTAKENAPCIIFIDEI 315

Query: 120 DEV 122
           D +
Sbjct: 316 DAI 318


>gi|259505904|ref|ZP_05748806.1| cell division protein HflB [Corynebacterium efficiens YS-314]
 gi|259166508|gb|EEW51062.1| cell division protein HflB [Corynebacterium efficiens YS-314]
          Length = 328

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +A   +   +++         DL  ++ P+ +LL GP G GKT ++R +A  AG
Sbjct: 166 DVAGADEAVDELHE-IKDFLEDPTRYQDLGAKI-PRGVLLYGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 224 VPFFSISGSDFVEM-FVGVGASRV-RDLFKQA 253


>gi|222081552|ref|YP_002540916.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
 gi|221726231|gb|ACM29320.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84]
          Length = 870

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ  A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 561 MEEMLGKRVVGQAQAVRAVSTAVR------RARAGLQDPSRPIGSFMFLGPTGVGKTELA 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 615 KALAEFMFDDETAMVRIDMSEFMEKHSVAR 644


>gi|242019805|ref|XP_002430349.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212515473|gb|EEB17611.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 754

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 270 DVAGCEEAKVEIMEFV-NFLKNPQQYIELGAKI-PKGAILTGPPGTGKTLLAKATAGEAN 327

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA-------- 126
            PFI V  ++F E+ +VG     V  +       A  I+     D V R++         
Sbjct: 328 VPFITVSGSEFLEM-FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGARNFGGHS 386

Query: 127 -SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              N   ++L  + G          A +N  ++  + L      D++I +   D     S
Sbjct: 387 EQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDRALLRPGRFDRQIFVPAPDIKGRAS 446

Query: 178 NFDIPGGASVGILNLSELFSKV 199
            F +        L+ S+L  K+
Sbjct: 447 IFKVHLQVLKTNLDKSDLARKM 468


>gi|198275273|ref|ZP_03207804.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
 gi|198271856|gb|EDY96126.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135]
          Length = 738

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           +K   N S   +   +   I GQ +A R V  A+      Q   A L DE  P  ++L V
Sbjct: 434 LKEEDNASLEALYERISGQIYGQDEAIRQVVEAV------QMAKAGLLDENKPLASLLFV 487

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G   I+ +++++ E            GY+G     ++ D + 
Sbjct: 488 GPTGVGKTEVAKVLASELGISLIRFDMSEYMEKHTIAKLIGSPAGYIGYEDGGLLTDAIR 547

Query: 109 VAINI 113
              N 
Sbjct: 548 KTPNC 552


>gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
 gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc
           metallopeptidase) [Synechococcus sp. PCC 7002]
          Length = 625

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 170 DDVAGVEEAKTELTEIVEFLKTPQRYTAIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera]
          Length = 676

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 214 NDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 268

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 269 GEAGVPFFSLSGSEFIEM-FVGIGASRV-RDLFNKA 302


>gi|54020382|ref|YP_115688.1| cell division protein [Mycoplasma hyopneumoniae 232]
 gi|53987555|gb|AAV27756.1| cell division protein [Mycoplasma hyopneumoniae 232]
          Length = 715

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A     L+N  +     A +     P+ ILL GP G GKT +++  A 
Sbjct: 230 DVAGNVEAKEEIAEFIDYLKNPTKYAAAGAKI-----PRGILLGGPPGTGKTLLAKATAG 284

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ YVG   +++ R+L   A N 
Sbjct: 285 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKDARND 320


>gi|325961735|ref|YP_004239641.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467822|gb|ADX71507.1| membrane protease FtsH catalytic subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 687

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 169 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|315082268|gb|EFT54244.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL078PA1]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|284054460|ref|ZP_06384670.1| cell division protein [Arthrospira platensis str. Paraca]
          Length = 75

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 6   IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFKKA 62


>gi|94499671|ref|ZP_01306208.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65]
 gi|94428425|gb|EAT13398.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           + +    +  ++   +   + GQ +A   +A A++             +E    + L  G
Sbjct: 442 VNMDDKKTLMDLDKNMKMMVYGQDEAITELATAIK-----MSRAGLKAEEKPIGSFLFAG 496

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDV 109
           PTGVGKT ++R+LA + G   ++ +++++ E            GYVG +   ++ + V+ 
Sbjct: 497 PTGVGKTEVTRQLAHVMGMELVRFDMSEYMEAHTVSRLIGAPPGYVGYDQGGLLTEAVNK 556

Query: 110 AINI 113
             + 
Sbjct: 557 TPHC 560


>gi|56751224|ref|YP_171925.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81299108|ref|YP_399316.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
 gi|56686183|dbj|BAD79405.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|81167989|gb|ABB56329.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus elongatus PCC 7942]
          Length = 613

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 NDVAGIDQAKLELTEVVDFLKNADRFTAVGAQI-----PKGVLLVGPPGTGKTLLAKAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 213 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 246


>gi|23097534|ref|NP_691000.1| cell division protein [Oceanobacillus iheyensis HTE831]
 gi|22775757|dbj|BAC12035.1| cell division protein (general stress protein) [Oceanobacillus
           iheyensis HTE831]
          Length = 675

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L++  +  Q+ A +     PK +LLVGP G GKT ++R +A
Sbjct: 163 KDVAGADEEKQELVEVVEFLKDPRKFSQVGARI-----PKGVLLVGPPGTGKTLLARAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 218 GEAGTPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 254


>gi|323127111|gb|ADX24408.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 699

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEISNRLKEHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDLFGSKEAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|302185009|ref|ZP_07261682.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. syringae 642]
 gi|330954577|gb|EGH54837.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae Cit 7]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|299148332|ref|ZP_07041394.1| putative cell division protein FtsH [Bacteroides sp. 3_1_23]
 gi|298513093|gb|EFI36980.1| putative cell division protein FtsH [Bacteroides sp. 3_1_23]
          Length = 714

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|149185295|ref|ZP_01863612.1| ATPase [Erythrobacter sp. SD-21]
 gi|148831406|gb|EDL49840.1| ATPase [Erythrobacter sp. SD-21]
          Length = 795

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +  +L   + GQ  A   ++ A++         A LRD   P  + L  GPTGVGKT 
Sbjct: 461 QNLDRDLKHVVFGQDAAVDKLSTAMK------LSRAGLRDPDKPIGSFLFSGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++R+LA + G    + +++++ E            GYVG +   ++ D +D   + 
Sbjct: 515 VARQLASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIDQNPHC 570


>gi|117920200|ref|YP_869392.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. ANA-3]
 gi|117612532|gb|ABK47986.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           sp. ANA-3]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D+    + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDKKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLASCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|2199518|gb|AAB66377.1| FtsH [Helicobacter pylori]
          Length = 632

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 173 AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 230

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A   ++    
Sbjct: 231 FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV---S 285

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
           G      T   F   L + +    E    +   +++      P     G  +   L  K 
Sbjct: 286 GNDEREQTLNQF---LAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342

Query: 200 MGSGRKKKIRMSVQ 213
             +GR + +++ ++
Sbjct: 343 DFNGRVEILKVHIK 356


>gi|71735793|ref|YP_275267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257485424|ref|ZP_05639465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289625412|ref|ZP_06458366.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649305|ref|ZP_06480648.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|71556346|gb|AAZ35557.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320323775|gb|EFW79859.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327915|gb|EFW83920.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330866851|gb|EGH01560.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330987928|gb|EGH86031.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010740|gb|EGH90796.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|330958174|gb|EGH58434.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|323138621|ref|ZP_08073688.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocystis
           sp. ATCC 49242]
 gi|322396109|gb|EFX98643.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocystis
           sp. ATCC 49242]
          Length = 813

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R + GQ  A  A+  A++              E      L  GPTGVGKT  +R
Sbjct: 466 LDETLRRVVYGQDKAISALTSAIK-----LARAGLRDQEKPIGCYLFSGPTGVGKTEAAR 520

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 521 QLATSLGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHC 573


>gi|297180942|gb|ADI17145.1| ATP-dependent zn proteases [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 630

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     P+ IL+VG  G GKT +++ +A 
Sbjct: 154 DVAGVDEAKEDVQELVEFLKDPGKFQKLGGHI-----PRGILMVGQPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 209 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 244


>gi|297618415|ref|YP_003703574.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297146252|gb|ADI03009.1| ATPase AAA-2 domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 830

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 524 KLEEILHQRVIGQDEAVKAVAQAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 577

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I+++++++ E   V R
Sbjct: 578 ARALAEALFGSEEALIRLDMSEYMEKHAVAR 608


>gi|150863826|ref|XP_001382432.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149385082|gb|ABN64403.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 787

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 286 KDVAGCDESKEEIMEFV----KFLQDPKKYERLGAKIPRGAILSGPPGTGKTLLAKATAG 341

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 342 EAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFKTA 374


>gi|308798703|ref|XP_003074131.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
 gi|116000303|emb|CAL49983.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
          Length = 826

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 26/185 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ SEL + +IGQ+ A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 487 QLESELHQRVIGQEAAVTSVAEAV------QRSRADLADPNGPVASFMFLGPTGVGKTEL 540

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA          ++++++++ E            GYVG +   ++ D V      V 
Sbjct: 541 AKALANYLFNSDTALVRLDMSEYMEKHSVARLIGAPPGYVGYDEGGMLTDAVRQKPYSV- 599

Query: 116 ESRRDEVREQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
               DE+ E+A ++    +L  L     T T      FR  L     +    +I  A+  
Sbjct: 600 -VLFDEI-EKAHVDVFNVLLQLLDEGHVTDTQGRNVSFRNCLIIMTSNLGSDEISYANKR 657

Query: 174 SDISN 178
            +  N
Sbjct: 658 RNKVN 662


>gi|119194407|ref|XP_001247807.1| hypothetical protein CIMG_01578 [Coccidioides immitis RS]
          Length = 811

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 348 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 402

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L + A
Sbjct: 403 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNQA 435


>gi|71893558|ref|YP_279004.1| cell division protein [Mycoplasma hyopneumoniae J]
 gi|72080545|ref|YP_287603.1| cell division protein [Mycoplasma hyopneumoniae 7448]
          Length = 716

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +A     L+N  +     A +     P+ ILL GP G GKT +++  A 
Sbjct: 231 DVAGNVEAKEEIAEFIDYLKNPTKYAAAGAKI-----PRGILLGGPPGTGKTLLAKATAG 285

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ YVG   +++ R+L   A N 
Sbjct: 286 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKDARND 321


>gi|88812981|ref|ZP_01128224.1| cell division protein FtsH [Nitrococcus mobilis Nb-231]
 gi|88789759|gb|EAR20883.1| cell division protein FtsH [Nitrococcus mobilis Nb-231]
          Length = 646

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK+    +   LR+  + Q+L   +     PK +LLVGP G GKT +++ +A 
Sbjct: 155 DVAGVEEAKQDVVELVEFLRDPAKFQRLGGRI-----PKGVLLVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+   A   
Sbjct: 210 EARVPFFTISGSDFVEM-FVGVGAARV-RDMFAQAKKH 245


>gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM
           2379]
 gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus
           DSM 2379]
          Length = 621

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L++  +  +L   +     PK +LL+GP G GKT +++ +A
Sbjct: 156 EDVAGIEEAKEELNEIIFFLKDPKKFTKLGGKI-----PKGVLLMGPPGTGKTLLAKAIA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 211 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFLQGKKSAPCIIFIDEIDAV 260


>gi|15923515|ref|NP_371049.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926202|ref|NP_373735.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
 gi|49482754|ref|YP_039978.1| stress response-related Clp ATPase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485389|ref|YP_042610.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|87161024|ref|YP_493213.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194286|ref|YP_499078.1| endopeptidase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148266984|ref|YP_001245927.1| ATPase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393031|ref|YP_001315706.1| ATPase [Staphylococcus aureus subsp. aureus JH1]
 gi|151220699|ref|YP_001331521.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156978853|ref|YP_001441112.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508764|ref|YP_001574423.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141039|ref|ZP_03565532.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253731128|ref|ZP_04865293.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732532|ref|ZP_04866697.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005318|ref|ZP_05143919.2| endopeptidase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795377|ref|ZP_05644356.1| endopeptidase [Staphylococcus aureus A9781]
 gi|258408936|ref|ZP_05681217.1| endopeptidase [Staphylococcus aureus A9763]
 gi|258420427|ref|ZP_05683370.1| endopeptidase [Staphylococcus aureus A9719]
 gi|258439347|ref|ZP_05690279.1| endopeptidase [Staphylococcus aureus A9299]
 gi|258444087|ref|ZP_05692424.1| endopeptidase [Staphylococcus aureus A8115]
 gi|258446355|ref|ZP_05694513.1| endopeptidase [Staphylococcus aureus A6300]
 gi|258448448|ref|ZP_05696563.1| endopeptidase [Staphylococcus aureus A6224]
 gi|258452743|ref|ZP_05700741.1| endopeptidase [Staphylococcus aureus A5948]
 gi|258453804|ref|ZP_05701778.1| endopeptidase [Staphylococcus aureus A5937]
 gi|269202147|ref|YP_003281416.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282894957|ref|ZP_06303180.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A8117]
 gi|282903112|ref|ZP_06311003.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus C160]
 gi|282904902|ref|ZP_06312760.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907852|ref|ZP_06315687.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910165|ref|ZP_06317969.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282918312|ref|ZP_06326049.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C427]
 gi|282928860|ref|ZP_06336451.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A10102]
 gi|283957322|ref|ZP_06374775.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284023534|ref|ZP_06377932.1| ClpA-related protein [Staphylococcus aureus subsp. aureus 132]
 gi|294850300|ref|ZP_06791034.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A9754]
 gi|295406901|ref|ZP_06816704.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8819]
 gi|295427062|ref|ZP_06819698.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297208762|ref|ZP_06925190.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246275|ref|ZP_06930124.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8796]
 gi|297590586|ref|ZP_06949225.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|304381877|ref|ZP_07364524.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81649908|sp|Q6GBW3|CLPC_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81651703|sp|Q6GJE4|CLPC_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81706177|sp|Q7A797|CLPC_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81782085|sp|Q99W78|CLPC_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063320|sp|Q2FJB5|CLPC_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063321|sp|Q2G0P5|CLPC_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|122063323|sp|P0C281|CLPC_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|13700415|dbj|BAB41713.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
 gi|14246293|dbj|BAB56687.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240883|emb|CAG39550.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49243832|emb|CAG42257.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|87126998|gb|ABD21512.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201844|gb|ABD29654.1| endopeptidase, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147740053|gb|ABQ48351.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945483|gb|ABR51419.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373499|dbj|BAF66759.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156720988|dbj|BAF77405.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367573|gb|ABX28544.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725142|gb|EES93871.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729461|gb|EES98190.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789349|gb|EEV27689.1| endopeptidase [Staphylococcus aureus A9781]
 gi|257840287|gb|EEV64750.1| endopeptidase [Staphylococcus aureus A9763]
 gi|257843617|gb|EEV68023.1| endopeptidase [Staphylococcus aureus A9719]
 gi|257847684|gb|EEV71683.1| endopeptidase [Staphylococcus aureus A9299]
 gi|257850757|gb|EEV74702.1| endopeptidase [Staphylococcus aureus A8115]
 gi|257854949|gb|EEV77894.1| endopeptidase [Staphylococcus aureus A6300]
 gi|257858317|gb|EEV81204.1| endopeptidase [Staphylococcus aureus A6224]
 gi|257859616|gb|EEV82466.1| endopeptidase [Staphylococcus aureus A5948]
 gi|257864060|gb|EEV86814.1| endopeptidase [Staphylococcus aureus A5937]
 gi|262074437|gb|ACY10410.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
 gi|269940097|emb|CBI48473.1| putative stress response-related Clp ATPase [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282317446|gb|EFB47818.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C427]
 gi|282325557|gb|EFB55865.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328236|gb|EFB58514.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331727|gb|EFB61238.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589468|gb|EFB94557.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A10102]
 gi|282596067|gb|EFC01028.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus C160]
 gi|282762639|gb|EFC02776.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A8117]
 gi|283469817|emb|CAQ49028.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           aureus subsp. aureus ST398]
 gi|283790773|gb|EFC29588.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285816224|gb|ADC36711.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus aureus 04-02981]
 gi|294822812|gb|EFG39247.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A9754]
 gi|294968132|gb|EFG44158.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8819]
 gi|295128850|gb|EFG58480.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|296886707|gb|EFH25612.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176873|gb|EFH36131.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus A8796]
 gi|297576885|gb|EFH95600.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|302332238|gb|ADL22431.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750416|gb|ADL64593.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339663|gb|EFM05610.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312439057|gb|ADQ78128.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829020|emb|CBX33862.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128816|gb|EFT84815.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315193888|gb|EFU24282.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196665|gb|EFU27012.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141611|gb|EFW33450.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141761|gb|EFW33589.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313245|gb|AEB87658.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329727906|gb|EGG64355.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329731020|gb|EGG67393.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329731944|gb|EGG68300.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|291335263|gb|ADD94882.1| FtsH peptidase [uncultured marine bacterium MedDCM-OCT-S09-C166]
          Length = 616

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|294636952|ref|ZP_06715276.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Edwardsiella
           tarda ATCC 23685]
 gi|291089845|gb|EFE22406.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Edwardsiella
           tarda ATCC 23685]
          Length = 766

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A  A+  A++            +D     + L  GPTGVGKT +
Sbjct: 457 KNLGERLRMLVFGQDKAISALTEAIK-----MSRAGLNQDHRPVGSFLFAGPTGVGKTEV 511

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LAR    P ++ +++++ E            GYVG +   ++ D V  + +
Sbjct: 512 TVQLARALDIPLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKSPH 565


>gi|289428044|ref|ZP_06429748.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes J165]
 gi|289158927|gb|EFD07127.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes J165]
 gi|313808309|gb|EFS46780.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL087PA2]
 gi|313818073|gb|EFS55787.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL046PA2]
 gi|313820932|gb|EFS58646.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL036PA1]
 gi|313823998|gb|EFS61712.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL036PA2]
 gi|313827068|gb|EFS64782.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL063PA1]
 gi|314926959|gb|EFS90790.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL036PA3]
 gi|314961779|gb|EFT05880.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL002PA2]
 gi|314979691|gb|EFT23785.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL072PA2]
 gi|314988245|gb|EFT32336.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL005PA2]
 gi|314990331|gb|EFT34422.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL005PA3]
 gi|315083762|gb|EFT55738.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL027PA2]
 gi|315087402|gb|EFT59378.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL002PA3]
 gi|315089819|gb|EFT61795.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL072PA1]
 gi|327326518|gb|EGE68306.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL096PA3]
 gi|328757301|gb|EGF70917.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL020PA1]
 gi|332676417|gb|AEE73233.1| chaperone protein ClpB [Propionibacterium acnes 266]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|282924437|ref|ZP_06332109.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A9765]
 gi|282592848|gb|EFB97852.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus A9765]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|290958665|ref|YP_003489847.1| chaperone ClpB [Streptomyces scabiei 87.22]
 gi|260648191|emb|CBG71299.1| chaperone ClpB [Streptomyces scabiei 87.22]
          Length = 871

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MEEELGRRLIGQTEAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I++++++++E   V R V
Sbjct: 623 ALADFLFDDERAMIRIDMSEYSEKHSVARLV 653


>gi|295131549|ref|YP_003582212.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           SK137]
 gi|291377311|gb|ADE01166.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           SK137]
 gi|313771688|gb|EFS37654.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL074PA1]
 gi|313793782|gb|EFS41813.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL110PA1]
 gi|313803095|gb|EFS44303.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL110PA2]
 gi|313810511|gb|EFS48225.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL083PA1]
 gi|313831552|gb|EFS69266.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL007PA1]
 gi|313832538|gb|EFS70252.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL056PA1]
 gi|313839279|gb|EFS76993.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL086PA1]
 gi|314964763|gb|EFT08863.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL082PA1]
 gi|314974903|gb|EFT18998.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL053PA1]
 gi|314978004|gb|EFT22098.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL045PA1]
 gi|314984584|gb|EFT28676.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL005PA1]
 gi|315079269|gb|EFT51272.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL053PA2]
 gi|315095482|gb|EFT67458.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL038PA1]
 gi|327332785|gb|EGE74517.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL096PA2]
 gi|327448406|gb|EGE95060.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL043PA2]
 gi|327448480|gb|EGE95134.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL043PA1]
 gi|327456114|gb|EGF02769.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL092PA1]
 gi|328762060|gb|EGF75565.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL099PA1]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
 gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16]
          Length = 662

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K+ +      L++  +   + A +     PK +LLVGP G GKT ++R +A
Sbjct: 165 KDVAGADEEKQELVEVVEFLKDPRKFAAIGARI-----PKGVLLVGPPGTGKTLLARAVA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|331017258|gb|EGH97314.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA2]
 gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL044PA1]
 gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA3]
 gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08]
          Length = 719

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 611

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 161 NDVAGADEEKEELQEIVEFLKYPKKFIELGARI-----PKGVLLVGPPGTGKTLLAKAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 216 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQAKKN 252


>gi|288801353|ref|ZP_06406807.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288331736|gb|EFC70220.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 743

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 16/124 (12%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +K   N S  ++   +   + GQ +A   V  A+            + D+    ++L VG
Sbjct: 427 LKDNNNDSLIDLKERILSMVYGQDEAVEKVVEAVHT-----AKAGLIDDDKPLASLLFVG 481

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDV 109
           PTGVGKT ++R LA   G   ++ +++++ E            GYVG     ++ D +  
Sbjct: 482 PTGVGKTEVARVLAHEMGVELVRFDMSEYAEKHSVAKLIGAPSGYVGYEDGGLLTDAIRK 541

Query: 110 AINI 113
             N 
Sbjct: 542 TPNC 545


>gi|262049567|ref|ZP_06022436.1| endopeptidase [Staphylococcus aureus D30]
 gi|259162307|gb|EEW46880.1| endopeptidase [Staphylococcus aureus D30]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           11379]
          Length = 684

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           15998]
 gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
 gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
          Length = 673

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 163 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 250


>gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
          Length = 688

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|14549664|gb|AAK66971.1|AF329695_1 ATP-dependent zinc metalloprotease [Mus musculus]
 gi|148679800|gb|EDL11747.1| AFG3(ATPase family gene 3)-like 1 (yeast), isoform CRA_b [Mus
           musculus]
          Length = 663

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 175 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAN 232

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 233 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 284

Query: 136 DALVGKTATSNTREVF 151
             L G++   NT    
Sbjct: 285 GHLGGQSEQENTLNQM 300


>gi|325067914|ref|ZP_08126587.1| ATP-dependent metalloprotease FtsH [Actinomyces oris K20]
          Length = 358

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASRV-RDLFDQA 293


>gi|254496116|ref|ZP_05109015.1| cell division protein FtsH [Legionella drancourtii LLAP12]
 gi|254354657|gb|EET13293.1| cell division protein FtsH [Legionella drancourtii LLAP12]
          Length = 600

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q L   +     P+ +LLVG  G GKT ++R +A 
Sbjct: 117 DVAGVDEAKDEVKELVDFLRDPTKFQNLGGRI-----PRGVLLVGSPGTGKTLLARAVAG 171

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 172 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 207


>gi|228473570|ref|ZP_04058322.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
 gi|228274942|gb|EEK13752.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
          Length = 639

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 194 QDVAGLEGAKEEVQEIVDFLKNPEKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 249 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFRQA 282


>gi|213970048|ref|ZP_03398180.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato T1]
 gi|301381403|ref|ZP_07229821.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058401|ref|ZP_07249942.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato K40]
 gi|302130350|ref|ZP_07256340.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925152|gb|EEB58715.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato T1]
 gi|330965609|gb|EGH65869.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|28870517|ref|NP_793136.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853765|gb|AAO56831.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|66046412|ref|YP_236253.1| putative AAA ATPase [Pseudomonas syringae pv. syringae B728a]
 gi|63257119|gb|AAY38215.1| AAA ATPase, central region:Clp, N terminal:Protein of unknown
           function DUF104:Protein of unknown function DUF104
           [Pseudomonas syringae pv. syringae B728a]
 gi|330900611|gb|EGH32030.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|82750232|ref|YP_415973.1| endopeptidase [Staphylococcus aureus RF122]
 gi|282915846|ref|ZP_06323611.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus D139]
 gi|122063322|sp|Q2YSD6|CLPC_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|82655763|emb|CAI80163.1| endopeptidase [Staphylococcus aureus RF122]
 gi|282320142|gb|EFB50487.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus D139]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|33863028|ref|NP_894588.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
 gi|33634945|emb|CAE20931.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9313]
          Length = 619

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+E +      + G ++AK  +   +   + RQ         L+P+ +LLVG  G GK
Sbjct: 152 LKPQEDLPIRFDDVAGIKEAKEELQEVVT--FLRQPESFIKLGALIPRGVLLVGAPGTGK 209

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  ++F E+ +VG     V  + R   + A  IV     D V
Sbjct: 210 TLLAKAIAGEADVPFFSMAASEFVEL-FVGVGASRVRDLFRKAKEKAPCIVFIDEIDAV 267


>gi|330875786|gb|EGH09935.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 757

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 447 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 501

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 502 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 561

Query: 111 INI 113
            + 
Sbjct: 562 PHC 564


>gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 672

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|315126398|ref|YP_004068401.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas sp. SM9913]
 gi|315014912|gb|ADT68250.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas sp. SM9913]
          Length = 753

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  +  A+  A+     R        +     + L  GPTGVGKT
Sbjct: 450 TLKNLDRNLKMLVFGQDQSIDALTSAI-----RLSRSGLANENKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++++LA+  G  FI+ +++++ E   V R
Sbjct: 505 EVTKQLAKCMGVEFIRFDMSEYVERHAVSR 534


>gi|314959595|gb|EFT03697.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL002PA1]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ  A + V+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 618 SLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 680

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGSDEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|167465129|ref|ZP_02330218.1| Cell division protein ftsH [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 629

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E      + + G  + K+ +      L++  +   + A +     PK +LL
Sbjct: 99  KSRARLYNEEKKRVTFQDVAGADEEKQELVEVVEFLKDPRKFSAVGARI-----PKGVLL 153

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 154 NGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 206


>gi|153000984|ref|YP_001366665.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS185]
 gi|160875697|ref|YP_001555013.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS195]
 gi|304409062|ref|ZP_07390683.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS183]
 gi|307303065|ref|ZP_07582820.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica BA175]
 gi|151365602|gb|ABS08602.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS185]
 gi|160861219|gb|ABX49753.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS195]
 gi|304352883|gb|EFM17280.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS183]
 gi|306913425|gb|EFN43847.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica BA175]
 gi|315267886|gb|ADT94739.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS678]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D     + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDRKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLANCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|75906365|ref|YP_320661.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75700090|gb|ABA19766.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 876

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR------RARAGMKDPNRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         ++++++++ E   V R V
Sbjct: 624 ARALAQFLFDSDDALVRLDMSEYMEKHSVSRLV 656


>gi|57239368|ref|YP_180504.1| ClpA-type chaperone [Ehrlichia ruminantium str. Welgevonden]
 gi|57161447|emb|CAH58372.1| heat shock protein ClpB [Ehrlichia ruminantium str. Welgevonden]
          Length = 859

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 34/235 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ  A +AV+ A+     R+        +    + L +GPTGVGKT + +
Sbjct: 561 MEEEIGKTVIGQDSAVKAVSDAV-----RRSRAGVQDAQKPLGSFLFLGPTGVGKTELVK 615

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++ ++++F E            GYVG +       L +       + 
Sbjct: 616 TLAEFLFCDKSALLRFDMSEFMEKHAVSRLIGAPPGYVGYDQGGA---LTEAVRRRPYQV 672

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              +  E+A  +    +L  L     T N           G++ D    I V  ++    
Sbjct: 673 ILFDEIEKAHGDIFNILLQVLDEGRLTDNH----------GKLVDFRNTILVLTSNLGQE 722

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDM 230
                   ++   ++ E  + V+ S  + +    + +   +  L ++  +R+ID+
Sbjct: 723 ILMNNESGNINEESVKESVTNVLRSHFRPEFLNRLDEIIIFHRLTKEHIERIIDV 777


>gi|25308028|pir||E84974 cell division protein ftsh [imported] - Buchnera sp. (strain APS)
 gi|10039051|dbj|BAB13085.1| cell division protein ftsh [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 596

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V+  +   + ++          +PK IL+VGP G GKT +++ +A  A 
Sbjct: 138 DVAGCDEAKEEVSELVE--YLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAK 195

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 196 VPFFTISGSDFVEM-FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAV 241


>gi|320039500|gb|EFW21434.1| intermembrane space AAA protease IAP-1 [Coccidioides posadasii str.
           Silveira]
          Length = 811

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 348 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 402

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L + A
Sbjct: 403 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNQA 435


>gi|297159329|gb|ADI09041.1| cell division protein ftsH-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 678

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 174 DVAGADEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|289425741|ref|ZP_06427496.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           SK187]
 gi|289153847|gb|EFD02553.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           SK187]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ  A + V+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 618 SLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|257424638|ref|ZP_05601065.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427306|ref|ZP_05603705.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429942|ref|ZP_05606326.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257435548|ref|ZP_05611596.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282913357|ref|ZP_06321146.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M899]
 gi|282923274|ref|ZP_06330954.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C101]
 gi|293500403|ref|ZP_06666254.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509348|ref|ZP_06668059.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus M809]
 gi|293523935|ref|ZP_06670622.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257272208|gb|EEV04331.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275499|gb|EEV06972.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279139|gb|EEV09740.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257284739|gb|EEV14858.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314142|gb|EFB44532.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322389|gb|EFB52711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920898|gb|EFD97959.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095408|gb|EFE25669.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467445|gb|EFF09960.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus M809]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|303311303|ref|XP_003065663.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105325|gb|EER23518.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 811

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 348 DVHGCDEAKDELQELVEFLSNPERFSSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 402

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F EI YVG   +++ R+L + A
Sbjct: 403 EAGVPFFYMSGSEFDEI-YVGVGAKRV-RELFNQA 435


>gi|240142543|ref|YP_002967054.1| putative ATP-dependent protease ATP-binding subunit
           [Methylobacterium extorquens AM1]
 gi|240012488|gb|ACS43713.1| Putative ATP-dependent protease ATP-binding subunit
           [Methylobacterium extorquens AM1]
          Length = 871

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L + ++GQ  A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 561 KMEEQLIKRVVGQTQAVRAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          +++++++F E   V R
Sbjct: 615 AKALAEFMFDDETAMVRIDMSEFMEKHSVAR 645


>gi|119897678|ref|YP_932891.1| cell division protein FtsH [Azoarcus sp. BH72]
 gi|119670091|emb|CAL94004.1| probable cell division protein FtsH [Azoarcus sp. BH72]
          Length = 630

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVAELVEFLRDPSKFQKLGGRI-----PKGVLMVGSPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 248


>gi|111022480|ref|YP_705452.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii
           RHA1]
 gi|110822010|gb|ABG97294.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii
           RHA1]
          Length = 850

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MESELGKRVVGQEEAVVAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          +++++++++E   V R V      +   A   + E+ R  
Sbjct: 621 SLADFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|104781333|ref|YP_607831.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           entomophila L48]
 gi|95110320|emb|CAK15027.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           entomophila L48]
          Length = 756

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLATAIK-----LSRAGLKAPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|315320470|ref|YP_004072526.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
 gi|283568943|gb|ADB27480.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
          Length = 642

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + I G  +AK     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 183 KDIAGIDEAKAEFEEIVSFLKEPEKYTVVGAKI-----PKGILLVGPPGTGKTLLAKAIA 237

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  V  ++F E+  G     V  + +   + A  IV     D V
Sbjct: 238 NEADVPFFSVAGSEFVEMFIGIGAARVRDLFQKASENAPCIVFIDEIDAV 287


>gi|312084249|ref|XP_003144198.1| hypothetical protein LOAG_08620 [Loa loa]
 gi|307760641|gb|EFO19875.1| hypothetical protein LOAG_08620 [Loa loa]
          Length = 324

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R +   LR+  R  QL A L     PK +LLVGP G GKT +++ +A
Sbjct: 230 KDVRGTDEAKNELRGIVSYLRDPERYTQLGARL-----PKGVLLVGPPGTGKTLLAKAIA 284

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
             A  PF +   ++F E+ +VG+   ++ RDL 
Sbjct: 285 GEAQVPFFQASGSEFDEL-FVGQGARRV-RDLF 315


>gi|300934619|ref|ZP_07149875.1| cell division protein [Corynebacterium resistens DSM 45100]
          Length = 896

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL----MPKNILLVGPTGVGKTAISRRL 73
             + G  +A   +         R  L    R E     +P+ +LL GP G GKT ++R +
Sbjct: 169 DDVAGADEAVEELDEI------RDFLSDPTRYEKLGAKIPRGVLLYGPPGTGKTLLARAV 222

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 223 AGEAGVPFYTISGSDFVEM-FVGVGASRV-RDLFQQA 257


>gi|299820645|ref|ZP_07052534.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
 gi|299817666|gb|EFI84901.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601]
          Length = 687

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + + +    +  +  A+L   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 179 DVAGADEEKQEL-VEVVEFLKDPRKFANLGARI-PKGVLLVGPPGTGKTLLARAVAGEAG 236

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 237 VPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 269


>gi|254282827|ref|ZP_04957795.1| cell division protease FtsH [gamma proteobacterium NOR51-B]
 gi|219679030|gb|EED35379.1| cell division protease FtsH [gamma proteobacterium NOR51-B]
          Length = 657

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK     +   LR+  R Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 173 DVAGVEEAKEDTHELVDFLRDPSRFQKLGGRI-----PRGVLMVGQPGTGKTLLAKAIAG 227

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 228 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 263


>gi|146283987|ref|YP_001174140.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
 gi|145572192|gb|ABP81298.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
          Length = 601

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           MPK +LLVGP G GKT ++R +A  A 
Sbjct: 146 DVAGVDEAKDELKEIIE--FLRDPQTYGRLGGRMPKGVLLVGPPGTGKTLLARAVAGEAK 203

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 204 VPFFSISGSEFVEL-FVGVGAARV-RDLFEQA 233


>gi|116072106|ref|ZP_01469374.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116065729|gb|EAU71487.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 617

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 163 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 464

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 98/268 (36%), Gaps = 30/268 (11%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +      L+   +  +L   L     PK +LL GP G GKT ++R +A 
Sbjct: 41  DVQGVDEAKQELEEIVQFLKEPLKFMELGGKL-----PKGVLLYGPPGTGKTHLARAIAG 95

Query: 76  LAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQAS----- 127
            AG PF ++  ++F E+ YVG   R V ++       A  IV     D V  + S     
Sbjct: 96  EAGVPFFQMSGSEFDEL-YVGVGARRVRELFAAAKKRAPCIVFIDELDAVGSKRSTKDQS 154

Query: 128 --INAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
                  ++L  L G + T         NT +   K L      D+ + + + D      
Sbjct: 155 YMRQTLNQLLVELDGFSPTEGVILIAATNTPDSLDKALVRPGRFDRLVPVPLPDVKGRTQ 214

Query: 178 NFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDMDTVH 234
              +   G  +     + + ++         +   +     +  +D S    + D++   
Sbjct: 215 ILKVHMRGVQMDRGVDASIIARGTPGFSGADLANIINHAAIKASKDSSKYVTMADLEWAK 274

Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGN 262
              I   E    V  DE  K+ A   G 
Sbjct: 275 DKIIMGSERKSAVITDESKKLTAYHEGG 302


>gi|302544353|ref|ZP_07296695.1| putative cell division protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461971|gb|EFL25064.1| putative cell division protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 669

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 163 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 250


>gi|226364997|ref|YP_002782780.1| chaperone ClpB [Rhodococcus opacus B4]
 gi|226243487|dbj|BAH53835.1| chaperone ClpB [Rhodococcus opacus B4]
          Length = 850

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MESELGKRVVGQEEAVVAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          +++++++++E   V R V      +   A   + E+ R  
Sbjct: 621 SLADFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|217973056|ref|YP_002357807.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS223]
 gi|217498191|gb|ACK46384.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS223]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D     + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDRKPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLANCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|197246424|gb|AAI68848.1| Afg3l1 protein [Rattus norvegicus]
          Length = 761

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 273 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAK 330

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 331 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 382

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             L G++   NT     + L + +  +   ++ V   ++     D 
Sbjct: 383 GHLGGQSEQENTLN---QMLVEMDGFNSTTNVVVLAGTNRPDILDP 425


>gi|160886813|ref|ZP_02067816.1| hypothetical protein BACOVA_04826 [Bacteroides ovatus ATCC 8483]
 gi|156107224|gb|EDO08969.1| hypothetical protein BACOVA_04826 [Bacteroides ovatus ATCC 8483]
          Length = 718

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 199 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 256

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 257 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 315

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 316 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 375

Query: 176 ISNFDIP 182
              F + 
Sbjct: 376 KEVFGVH 382


>gi|145341280|ref|XP_001415741.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144575964|gb|ABO94033.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 807

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 26/185 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + +IGQ+ A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 488 QLEAELHQRVIGQEAAVTSVAEAV------QRSRADLADPNGPVASFMFLGPTGVGKTEL 541

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA          ++++++++ E            GYVG +   ++ D V      V 
Sbjct: 542 AKALASYLFNSDTALVRLDMSEYMEKHSVARLIGAPPGYVGYDEGGMLTDAVRQKPYSV- 600

Query: 116 ESRRDEVREQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
               DE+ E+A ++    +L  L     T T      FR  L     +    +I  A+  
Sbjct: 601 -VLFDEI-EKAHVDVFNVLLQLLDEGHVTDTQGRNVSFRNCLIIMTSNLGSDEISYANKR 658

Query: 174 SDISN 178
            +  N
Sbjct: 659 RNKVN 663


>gi|115386108|ref|XP_001209595.1| hypothetical protein ATEG_06909 [Aspergillus terreus NIH2624]
 gi|114190593|gb|EAU32293.1| hypothetical protein ATEG_06909 [Aspergillus terreus NIH2624]
          Length = 885

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   ++  + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 402 DVAGMDEAKVEIMEFVSFLKHPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 456

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 457 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 489


>gi|17229814|ref|NP_486362.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
 gi|54035877|sp|Q8YUL9|CLPB1_ANASP RecName: Full=Chaperone protein ClpB 1
 gi|17131414|dbj|BAB74021.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
          Length = 880

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR------RARAGMKDPNRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         ++++++++ E   V R V
Sbjct: 624 ARALAQFLFDADDALVRLDMSEYMEKHSVSRLV 656


>gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG]
 gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF]
          Length = 684

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+   +     + G  +A   +      L+   + Q + A +     PK +LL
Sbjct: 161 KLLTKDTPKTTFA----DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLL 211

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 261


>gi|310779128|ref|YP_003967461.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM
           2926]
 gi|309748451|gb|ADO83113.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM
           2926]
          Length = 738

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 104/283 (36%), Gaps = 26/283 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            +I +   + + G ++AK  +   +   + ++          +PK +LL+G  G GKT +
Sbjct: 247 EQISNITFKDVAGIEEAKVELEEVV--HFLKEPETFKRMGAKIPKGVLLLGAPGTGKTLL 304

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA 126
           ++ +A  AG PF  +  ++F E+ +VG     V  +       A  I+     D V  + 
Sbjct: 305 AKAVAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFNKARKNAPCIIFIDEIDAVGRKR 363

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                                 +   + L + +  + E  I V   ++     D      
Sbjct: 364 GA----------GQGGGNDEREQTLNQLLVEMDGFNSEETIIVLAATNRPEILDKALM-R 412

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            G  +   +  +   +GR+  +++ V+    +L  D     +D+ T+ R +   V     
Sbjct: 413 PGRFDRQVVVDRPDITGREAILKVHVKG--KKLSED-----VDLHTIARKTPGFVGADLA 465

Query: 247 VFLDEFDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTK 287
             L+E   + AR     I +    E  ++  +     S V  +
Sbjct: 466 NMLNEAAILAARSGRETITMEDLEEAAEKVSIGPERKSRVIVE 508


>gi|212703189|ref|ZP_03311317.1| hypothetical protein DESPIG_01231 [Desulfovibrio piger ATCC 29098]
 gi|212673455|gb|EEB33938.1| hypothetical protein DESPIG_01231 [Desulfovibrio piger ATCC 29098]
          Length = 768

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L + + GQ++A      A+       +  A L     P    L  GPTGVGKT ++
Sbjct: 452 LEKNLKQIVFGQEEAVEQTVRAI------LRSRAGLGQRQRPTGAFLFYGPTGVGKTELA 505

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R LA+  G  F++ +++++ E            GYVG +   ++ + V  A   
Sbjct: 506 RGLAQTMGVEFLRYDMSEYMEPHTVSRLIGSPPGYVGFDQGGLLTEAVRKAPYS 559


>gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum]
          Length = 625

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             IIGQ  AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 350 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATEC 407

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 408 RATFFSISAASLT-SKYVGEG-EKMVRALFAIA 438


>gi|50843466|ref|YP_056693.1| ATP-dependent protease (Clp chaperone) [Propionibacterium acnes
           KPA171202]
 gi|50841068|gb|AAT83735.1| ATP-dependent protease (Clp chaperone) [Propionibacterium acnes
           KPA171202]
 gi|313763826|gb|EFS35190.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL013PA1]
 gi|313813855|gb|EFS51569.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL025PA1]
 gi|313817011|gb|EFS54725.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL059PA1]
 gi|313829817|gb|EFS67531.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL063PA2]
 gi|314916579|gb|EFS80410.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL005PA4]
 gi|314918949|gb|EFS82780.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL050PA1]
 gi|314920970|gb|EFS84801.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL050PA3]
 gi|314932375|gb|EFS96206.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL067PA1]
 gi|314956684|gb|EFT00936.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL027PA1]
 gi|314968731|gb|EFT12829.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL037PA1]
 gi|315100146|gb|EFT72122.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL059PA2]
 gi|315102468|gb|EFT74444.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL046PA1]
 gi|315107811|gb|EFT79787.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL030PA1]
 gi|327455792|gb|EGF02447.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL087PA3]
 gi|327457937|gb|EGF04592.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL083PA2]
 gi|328757107|gb|EGF70723.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL087PA1]
 gi|328757485|gb|EGF71101.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL025PA2]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|332865235|ref|XP_001154105.2| PREDICTED: fidgetin-like 1 isoform 5 [Pan troglodytes]
 gi|332865237|ref|XP_003339446.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865239|ref|XP_003318482.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865241|ref|XP_003339447.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865243|ref|XP_003318484.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865245|ref|XP_527740.3| PREDICTED: fidgetin-like 1 isoform 6 [Pan troglodytes]
 gi|332865247|ref|XP_001153855.2| PREDICTED: fidgetin-like 1 isoform 2 [Pan troglodytes]
 gi|332865249|ref|XP_003339448.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865251|ref|XP_003318486.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865253|ref|XP_001153978.2| PREDICTED: fidgetin-like 1 isoform 3 [Pan troglodytes]
          Length = 674

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|315109615|gb|EFT81591.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL030PA2]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|257432644|ref|ZP_05609004.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282059|gb|EEV12194.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
          Length = 818

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|254520537|ref|ZP_05132593.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
 gi|226914286|gb|EEH99487.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA]
          Length = 600

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K      P +        + G  + K+ +   + +  ++     ++   + PK +LLVGP
Sbjct: 142 KSRAKIMPPDAKRVTFDDVAGADEEKQELEEIV-DFLKQPSRYTEMGARI-PKGVLLVGP 199

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 200 PGTGKTLLAKAIAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 246


>gi|225849408|ref|YP_002729572.1| ATP-dependent metallopeptidase HflB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643912|gb|ACN98962.1| ATP-dependent metallopeptidase HflB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 632

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  V      L++  R Q+L         PK ILL G  GVGKT +++ +A
Sbjct: 153 DDVAGMDEVKEEVKEIIEYLKDPSRYQKLGG-----RAPKGILLYGDPGVGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINA 130
             A  PFI +  + F E+ +VG    ++ RDL +     A  ++     D V  +A    
Sbjct: 208 GEANVPFISISGSDFVEM-FVGVGAARV-RDLFETAKKHAPCLIFIDEIDAV-GRARTGV 264

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
                    G     + RE    +L          +  +   +++  +   P     G  
Sbjct: 265 ---------GFGGGHDEREQTLNQLLVELDGFDTNEGIIVIAATNRPDILDPALLRPGRF 315

Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
           +      K    GR + +++ V+K    L  D
Sbjct: 316 DRQISVPKPDVKGRYEILKVHVKKKNIPLAED 347


>gi|224535858|ref|ZP_03676397.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522581|gb|EEF91686.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 742

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK     S   + + +   I GQ++A R V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDTTSLETLHARISAKIYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|123966074|ref|YP_001011155.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200440|gb|ABM72048.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9515]
          Length = 637

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKEDLEEVVTFLKKPEKFTSVGARI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V R++     
Sbjct: 236 GEAGVPFFSLAGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++         +L+      + S  ++    +       L  +E+  L      
Sbjct: 355 GRLSILEVHSKNKTLQEDLT------LESIARRTPGFTGADLANLL--NEAAILT--ARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            + SI ++E       D  D+IVA   G+
Sbjct: 405 RKKSISILEID-----DSVDRIVAGMEGS 428


>gi|57168871|ref|ZP_00368001.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|305431978|ref|ZP_07401145.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
 gi|57019707|gb|EAL56393.1| cell division protein (ftsH) [Campylobacter coli RM2228]
 gi|304445062|gb|EFM37708.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20]
          Length = 534

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 4   TFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVG 60
           + N  P  I +     + G  + K  ++     L+N  + ++         MPK +L+VG
Sbjct: 135 SSNIKPV-ISNITFNDVAGVSEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVG 188

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRES 117
           P GVGKT I++ +A  AG PF     + F EI YVG     V ++      +A +I+   
Sbjct: 189 PPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSRAKMMAPSIIFID 247

Query: 118 RRDEV-REQASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISD 162
             D V + +  ++  ER      +L  + G    S        N  E+    L      D
Sbjct: 248 EIDAVGKARGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFD 307

Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           + I + + D    +   +I        ++L+++
Sbjct: 308 RRIFLSLPDFKDRLKILEIYMKGKNNNIDLNKI 340


>gi|327335177|gb|EGE76887.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL097PA1]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|314981723|gb|EFT25816.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL110PA3]
 gi|315092488|gb|EFT64464.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL110PA4]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 369

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
            +  D  IIGQ+DAK+   I +    +  Q P +L  E  PKN+L  GP G GKT ++R 
Sbjct: 118 KARFDE-IIGQEDAKKKCKIIM----KYLQNP-ELFGEWAPKNVLFYGPPGTGKTMMARA 171

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           LA    + FI V+  +      VG +  ++IR+L   A
Sbjct: 172 LATETDSSFIMVKAPELIGEH-VG-DSAKMIRELYKKA 207


>gi|282854800|ref|ZP_06264134.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes J139]
 gi|282581946|gb|EFB87329.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes J139]
 gi|314924482|gb|EFS88313.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL001PA1]
 gi|314967306|gb|EFT11405.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL082PA2]
 gi|315094731|gb|EFT66707.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL060PA1]
 gi|315102893|gb|EFT74869.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL050PA2]
 gi|327328580|gb|EGE70340.1| ATP-dependent chaperone protein ClpB [Propionibacterium acnes
           HL103PA1]
          Length = 857

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ  A + V+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEERLHERLIGQDRAVKTVSDAVR------RSRAGISDPNRPTGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFLFDDETALVRIDMSEYMEKHSVSRLV 648


>gi|225682684|gb|EEH20968.1| cell division protease ftsH [Paracoccidioides brasiliensis Pb03]
          Length = 541

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 74  DVHGCDEAKEELQELVEFLTNPERFNSLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 128

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ YVG   +++ R+L + A
Sbjct: 129 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RELFNQA 161


>gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 676

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 214 NDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARI-----PKGVLLVGPPGTGKTLLAKAIA 268

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 269 GEAGVPFFSLSGSEFIEM-FVGIGASRV-RDLFNKA 302


>gi|110834146|ref|YP_693005.1| ATP-dependent Clp protease, ATP-binding subunitclpa [Alcanivorax
           borkumensis SK2]
 gi|110647257|emb|CAL16733.1| ATP-dependent Clp protease, ATP-binding subunitClpA [Alcanivorax
           borkumensis SK2]
          Length = 755

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ +A   ++ A++             +     + +  GPTG
Sbjct: 446 SDKELLRNLERDLKMTVFGQDEAIDTISAAIK-----LSRAGLKGEHKPIGSFMFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT +SR+LAR  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 501 VGKTEVSRQLARALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKTPH 560

Query: 113 I 113
            
Sbjct: 561 C 561


>gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 603

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 192 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 249

Query: 111 INIVR 115
               R
Sbjct: 250 KKNSR 254


>gi|332283364|ref|YP_004415275.1| cell division protein [Pusillimonas sp. T7-7]
 gi|330427317|gb|AEC18651.1| cell division protein [Pusillimonas sp. T7-7]
          Length = 631

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPTKFQRLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIIFIDEIDAV 258


>gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74]
 gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74]
          Length = 685

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+   S     + G  +A   +      L+   + Q + A +     PK +LL
Sbjct: 159 KLLTKDTPKTTFS----DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLL 209

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 210 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|220934157|ref|YP_002513056.1| ATP-dependent metalloprotease FtsH [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995467|gb|ACL72069.1| ATP-dependent metalloprotease FtsH [Thioalkalivibrio sp. HL-EbGR7]
          Length = 637

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 35/286 (12%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVAELVEFLRDPSKFQKLGGKI-----PRGVLMVGSPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---- 126
            A  PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V R +     
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKHAPCIIFIDEIDAVGRHRGAGLG 268

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G   T         N  +V    L      D+++ + + D  
Sbjct: 269 GGHDEREQTLNQLLVEMDGFEGTEGVIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDVR 328

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM--- 230
                  +         N+          G       ++           + RL+DM   
Sbjct: 329 GREQILKVHMRKVPLAENVRPDLIARGTPGFSGADLANLVNEAALFAARGNKRLVDMHDF 388

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
           +      +   E   +V  D   K+ A        V R   + D +
Sbjct: 389 ERAKDKIMMGAERKSMVMNDAEKKLTAYHEAGHAIVGRLVPEHDPV 434


>gi|168069917|ref|XP_001786624.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660847|gb|EDQ48561.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 232

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ +AK+ +  AL    R  ++       L  K ILL GP G GKT +++  A   
Sbjct: 71  EEIGGQDNAKQELREALDFLIRHDEIQKLGIRPL--KGILLTGPPGTGKTLMAKAAAHYT 128

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ YVG    ++ RDL   A    R     E ++ A I  +E  +D 
Sbjct: 129 DSVFVAASGSEFVEM-YVGVGAGRV-RDLFRDA----RNRAAKENKQSAIIFIDE--IDV 180

Query: 138 LVGKTATSNTRE 149
           + GK      RE
Sbjct: 181 IGGKREGGQQRE 192


>gi|148238691|ref|YP_001224078.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847230|emb|CAK22781.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 617

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 163 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|116834075|gb|ABK29903.1| HslU [Buchnera aphidicola]
          Length = 43

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437
           +++EDISF+ASD   KT+ I+ +YV  H+    S  D+  FIL
Sbjct: 1   KLMEDISFNASDHHGKTIKINEQYVGEHLDQLVSNEDLSRFIL 43


>gi|187477434|ref|YP_785458.1| cell division protein [Bordetella avium 197N]
 gi|115422020|emb|CAJ48542.1| cell division protein [Bordetella avium 197N]
          Length = 627

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT ++R +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|58579335|ref|YP_197547.1| ClpB protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58417961|emb|CAI27165.1| ClpB protein [Ehrlichia ruminantium str. Welgevonden]
          Length = 863

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 34/235 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ  A +AV+ A+     R+        +    + L +GPTGVGKT + +
Sbjct: 565 MEEEIGKTVIGQDSAVKAVSDAV-----RRSRAGVQDAQKPLGSFLFLGPTGVGKTELVK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++ ++++F E            GYVG +       L +       + 
Sbjct: 620 TLAEFLFCDKSALLRFDMSEFMEKHAVSRLIGAPPGYVGYDQGGA---LTEAVRRRPYQV 676

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              +  E+A  +    +L  L     T N           G++ D    I V  ++    
Sbjct: 677 ILFDEIEKAHGDIFNILLQVLDEGRLTDNH----------GKLVDFRNTILVLTSNLGQE 726

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDM 230
                   ++   ++ E  + V+ S  + +    + +   +  L ++  +R+ID+
Sbjct: 727 ILMNNESGNINEESVKESVTNVLRSHFRPEFLNRLDEIIIFHRLTKEHIERIIDV 781


>gi|305664431|ref|YP_003860718.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
 gi|88708448|gb|EAR00684.1| putative transmembrane AAA-metalloprotease FtsH [Maribacter sp.
           HTCC2170]
          Length = 669

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      LRN  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLEGAKEEVEEIVEFLRNPDKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 251 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 284


>gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
 gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
          Length = 682

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+   +     + G  +A   +      L+   + Q + A +     PK +LL
Sbjct: 159 KLLTKDTPKTTFA----DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLL 209

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 210 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|255318896|ref|ZP_05360122.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262378849|ref|ZP_06072006.1| cell division protein [Acinetobacter radioresistens SH164]
 gi|255304152|gb|EET83343.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262300134|gb|EEY88046.1| cell division protein [Acinetobacter radioresistens SH164]
          Length = 631

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +PK +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPKGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|163856971|ref|YP_001631269.1| ATP-dependent Clp protease ATP-binding [Bordetella petrii DSM
           12804]
 gi|163260699|emb|CAP43001.1| ATP-dependent clp protease ATP-binding [Bordetella petrii]
          Length = 775

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 40/255 (15%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ  A  A++ A++            + +    + L  GPTGVGKT +
Sbjct: 459 ATLDRDLKTVVFGQDTAIEALSAAIK-----MARSGLGKPDRPIGSFLFSGPTGVGKTEV 513

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +R+LA + G   ++ +++++ E            GYVG +   ++ + +    + V    
Sbjct: 514 ARQLAFIMGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHCVL--L 571

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T N          +G  +D    I +  T++    
Sbjct: 572 LDEI-EKAHPDVFNILLQVMDHGTLTDN----------NGRKADFRNVIIIMTTNAGAET 620

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLID------MD 231
            + P         + +  +++      + + R+     +  L R+   R++D       D
Sbjct: 621 LNRPAIGFSNSRVVGDEMAEIRRMFTPEFRNRLDAIIPFAPLSREIILRVVDKFLMQLED 680

Query: 232 TVHRDSIQMVENYGI 246
            +H   ++ V   G+
Sbjct: 681 QLHERRVEAVFTDGL 695


>gi|157413822|ref|YP_001484688.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215]
 gi|157388397|gb|ABV51102.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215]
          Length = 620

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|154149469|ref|YP_001406077.1| putative cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
 gi|153805478|gb|ABS52485.1| putative Cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
          Length = 643

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 98/262 (37%), Gaps = 39/262 (14%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F
Sbjct: 192 IVDFLKNPGRYINLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVNGSSF 246

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTA------ 143
            E+ +VG    ++ RDL + A          +    A +  +E  +DA+    A      
Sbjct: 247 IEM-FVGVGASRV-RDLFETA----------KKEAPAIVFIDE--IDAIGKSRAAGGFGG 292

Query: 144 -TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS 202
                 +   + L + +    + +  +   +++            G  +   L  K    
Sbjct: 293 GNDEREQTLNQLLAEMDGFSSDANPVIVLAATNRPEVLDAALLRPGRFDRQVLVDKPDFK 352

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262
           GR + + +  +            + +D++ + R +  +        ++E   +  R+  N
Sbjct: 353 GRIEILNVHSKDIK-------LSKSVDLEEIARLTAGLAGADLANIINEAALLAGRNEKN 405

Query: 263 GIGVSREGVQRDLLPLVEGSSV 284
            +       Q DL+  VE +  
Sbjct: 406 YVE------QNDLVEAVERAIA 421


>gi|114664154|ref|XP_001139499.1| PREDICTED: paraplegin isoform 1 [Pan troglodytes]
          Length = 694

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 228 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 282

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 283 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 335


>gi|114613355|ref|XP_001154038.1| PREDICTED: similar to Fidgetin-like 1 isoform 4 [Pan troglodytes]
          Length = 674

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|254975613|ref|ZP_05272085.1| chaperone [Clostridium difficile QCD-66c26]
 gi|255093001|ref|ZP_05322479.1| chaperone [Clostridium difficile CIP 107932]
 gi|255314742|ref|ZP_05356325.1| chaperone [Clostridium difficile QCD-76w55]
 gi|255517416|ref|ZP_05385092.1| chaperone [Clostridium difficile QCD-97b34]
 gi|255650526|ref|ZP_05397428.1| chaperone [Clostridium difficile QCD-37x79]
 gi|260683626|ref|YP_003214911.1| chaperone [Clostridium difficile CD196]
 gi|260687286|ref|YP_003218420.1| chaperone [Clostridium difficile R20291]
 gi|306520482|ref|ZP_07406829.1| chaperone [Clostridium difficile QCD-32g58]
 gi|260209789|emb|CBA63611.1| chaperone [Clostridium difficile CD196]
 gi|260213303|emb|CBE04864.1| chaperone [Clostridium difficile R20291]
          Length = 864

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 568 KLEDELHKRVIGQDEAVTAVSNAV------IRARAGLKDERKPIGSFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         I+++++++ E   V R V
Sbjct: 622 AKTLARNLFDSDDNIIRIDMSEYMEKHAVSRLV 654


>gi|33864841|ref|NP_896400.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
 gi|33632364|emb|CAE06820.1| cell division protein FtsH2 [Synechococcus sp. WH 8102]
          Length = 615

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|120597893|ref|YP_962467.1| ATP-dependent metalloprotease FtsH [Shewanella sp. W3-18-1]
 gi|120557986|gb|ABM23913.1| membrane protease FtsH catalytic subunit [Shewanella sp. W3-18-1]
          Length = 657

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 626

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK   + +   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 169 NDVAGVEEAKTELQEIVDFLKTPQRFTNIGARI-----PKGVLLVGPPGTGKTLMAKAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVPFFSISGSEFVEL-FVGAGAARV-RDLFEQA 257


>gi|221104647|ref|XP_002160802.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 470

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  + Q+L   +     PK +LLVGP G GKT +++ +A 
Sbjct: 16  DVAGIDEAKAELEEIVDFLKSPQKFQKLGGKI-----PKGVLLVGPPGTGKTLLAKAIAG 70

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 71  EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKN 106


>gi|241557953|ref|XP_002400359.1| ATPase, putative [Ixodes scapularis]
 gi|229559934|sp|B7PXE3|SPAST_IXOSC RecName: Full=Spastin
 gi|215501771|gb|EEC11265.1| ATPase, putative [Ixodes scapularis]
          Length = 648

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   I GQ+ AK+A++  +     R +L   LR    PK +LL GP G GKT +++ +A 
Sbjct: 372 LFSDIAGQEVAKQALSEMVILPTDRPELFTGLRAP--PKGLLLFGPPGNGKTMLAKAVAH 429

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + + F+ +     T   YVG   E+++R L  VA
Sbjct: 430 ESNSTFLNISAASLT-SKYVGEG-EKLVRALFAVA 462


>gi|167753106|ref|ZP_02425233.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216]
 gi|167659420|gb|EDS03550.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216]
          Length = 698

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK     +   L+   + + + A +     PK  LLVGP G GKT +++ +A
Sbjct: 193 KDVAGLEEAKVEIMEIVDFLKKPDKYKSIGAKI-----PKGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF+ +  + F E+ +VG    ++ RDL + A
Sbjct: 248 GEANVPFLSISGSDFVEM-FVGVGASRV-RDLFEQA 281


>gi|118411141|ref|YP_874535.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|224015722|ref|XP_002297509.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
 gi|116739888|gb|ABK20758.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|220967773|gb|EED86149.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
          Length = 642

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 104/299 (34%), Gaps = 54/299 (18%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 183 NDIAGIDEAKAEFEEIVSFLKEPEKYTVVGAKI-----PKGILLVGPPGTGKTLLAKAIA 237

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQA----- 126
             A  PF  V  ++F E+  G     V  + +   + A  IV     D V RE+      
Sbjct: 238 NEADVPFFSVAGSEFVEMFIGIGAARVRDLFQKASENAPCIVFIDEIDAVGRERGAGVGG 297

Query: 127 ----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
                     ++L  + G             N  ++    L      D+++ + + D   
Sbjct: 298 GNDEREQTLNQLLTEMDGFKENKGVIVVGATNRVDILDAALLRPGRFDRQVTVNLPDRLG 357

Query: 175 DISNF-----DIPGGASVGILNLSE--------LFSKVMGSGRKKKIRMSVQKCYPELMR 221
            IS       + P G  V ++ L+           + ++        R   +      + 
Sbjct: 358 RISILKVHAKNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKETISKNEVN 417

Query: 222 DESDRLID-------MDTVHRDSIQMVENYGIV------FLDEFDKIVARDSGNGIGVS 267
              DR+I         D+ ++  I   E    +        DE +KI     GN  G++
Sbjct: 418 QAIDRIIGGIAGTPMEDSKNKKLIAYHEVGHAITGTVLQSHDEVEKITITPRGNAKGLT 476


>gi|110597287|ref|ZP_01385575.1| AAA ATPase, central region:ATPase associated with various cellular
           activities, AAA_5 [Chlorobium ferrooxidans DSM 13031]
 gi|110341123|gb|EAT59591.1| AAA ATPase, central region:ATPase associated with various cellular
           activities, AAA_5 [Chlorobium ferrooxidans DSM 13031]
          Length = 441

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 22/242 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ+DA  AV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEQELHKRVIGQEDAVTAVSEAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE------ 121
           R LA          I+++++++ E   V R V      +       + E+ R +      
Sbjct: 189 RALADYLFDDEDSMIRIDMSEYMESHTVSRLVGAPPGYVGYEEGGQLTEAVRRKPFSVVL 248

Query: 122 --VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +    +L  L     T +       K     ++       +      +   
Sbjct: 249 LDEIEKAHPDVFNILLQILDDGRLTDSKGHTVNFKNTIIIMTSNIGAQMIQAEMGKLDGV 308

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM--DTVHRDS 237
           +     S     L +L  + +      +I   +   +  L R+E  +++ +  D +   +
Sbjct: 309 NRDALLSGLQEKLFQLLKQQVKPEFLNRIDEIIL--FTPLTREELKKIVIIQFDRIKETA 366

Query: 238 IQ 239
           ++
Sbjct: 367 MR 368


>gi|300726155|ref|ZP_07059612.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
 gi|299776625|gb|EFI73178.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
          Length = 821

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N   + +   +   I GQ +A   V  A+      +   A L+D+  P  ++L V
Sbjct: 518 MKEDDNKQLKTLYKRMAERIYGQDEAISQVVEAV------EMAKAGLQDDNKPLASLLFV 571

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT ++R LA+  G   ++ +++++ E            GYVG     ++ D + 
Sbjct: 572 GPTGVGKTEVARVLAQQLGIELVRFDMSEYMEKHAVAKLIGSPAGYVGYEDGGLLVDAIR 631

Query: 109 VAINI 113
              N 
Sbjct: 632 KTPNC 636


>gi|297796141|ref|XP_002865955.1| FTSH11 [Arabidopsis lyrata subsp. lyrata]
 gi|297311790|gb|EFH42214.1| FTSH11 [Arabidopsis lyrata subsp. lyrata]
          Length = 805

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           +L    +P + V    + + G  DAK     V   L+N  +  +L   L     PK ILL
Sbjct: 346 ELNKEITPEKNVKTF-KDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKL-----PKGILL 399

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVR 115
            G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  I+ 
Sbjct: 400 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIIF 458

Query: 116 ESRRDEV 122
               D V
Sbjct: 459 IDEIDAV 465


>gi|163760871|ref|ZP_02167950.1| probable atp-dependent clp protease atp-binding subunit protein
           [Hoeflea phototrophica DFL-43]
 gi|162281915|gb|EDQ32207.1| probable atp-dependent clp protease atp-binding subunit protein
           [Hoeflea phototrophica DFL-43]
          Length = 842

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   + GQ  A  ++  A+     R         +    + L  GPTGVGKT ++R
Sbjct: 467 LDKELRSVVYGQDLAIDSLTAAI-----RLARAGLREPDKPIGSYLFSGPTGVGKTEVAR 521

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D VD     
Sbjct: 522 QLADSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPYC 574


>gi|146293935|ref|YP_001184359.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens CN-32]
 gi|145565625|gb|ABP76560.1| membrane protease FtsH catalytic subunit [Shewanella putrefaciens
           CN-32]
          Length = 657

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|89893184|ref|YP_516671.1| hypothetical protein DSY0438 [Desulfitobacterium hafniense Y51]
 gi|219666457|ref|YP_002456892.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|89332632|dbj|BAE82227.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536717|gb|ACL18456.1| ATPase AAA-2 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 826

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ+DA +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 510 LEETLHQRVVGQEDAVKAVSRAVR------RARAGLKDPKRPVGSFIFLGPTGVGKTELA 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           R LA          I+++++++ E   V R V      +       + E+ R +
Sbjct: 564 RALAEALFGEEDALIRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAIRRK 617


>gi|237714479|ref|ZP_04544960.1| metalloprotease FtsH [Bacteroides sp. D1]
 gi|294645938|ref|ZP_06723609.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CC 2a]
 gi|294805892|ref|ZP_06764762.1| ATP-dependent metallopeptidase HflB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445643|gb|EEO51434.1| metalloprotease FtsH [Bacteroides sp. D1]
 gi|292638738|gb|EFF57085.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CC 2a]
 gi|294446921|gb|EFG15518.1| ATP-dependent metallopeptidase HflB [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 698

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 178 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 235

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 236 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 294

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 295 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 354

Query: 176 ISNFDIP 182
              F + 
Sbjct: 355 KEVFGVH 361


>gi|255690423|ref|ZP_05414098.1| ATP-dependent metalloprotease FtsH [Bacteroides finegoldii DSM
           17565]
 gi|260624042|gb|EEX46913.1| ATP-dependent metalloprotease FtsH [Bacteroides finegoldii DSM
           17565]
          Length = 710

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 198 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 255

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 256 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 314

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 315 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 374

Query: 176 ISNFDIP 182
              F + 
Sbjct: 375 KEVFGVH 381


>gi|148240025|ref|YP_001225412.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848564|emb|CAK24115.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 625

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 172 DVAGVDEAKDELTEIVDFLKTPERYAEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 227 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKN 262


>gi|123968995|ref|YP_001009853.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601]
 gi|123199105|gb|ABM70746.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601]
          Length = 620

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  ++ +   D+   + PK +LLVGP G GKT +S+ +A  A 
Sbjct: 171 DVAGVDEAKDELTEIV-DFLKKPERYTDIGARI-PKGVLLVGPPGTGKTLLSKAVAGEAE 228

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 229 VPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|323703791|ref|ZP_08115429.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531260|gb|EGB21161.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 818

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 35/231 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ DA +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 507 LEEVLHQRVVGQDDAVKAVSRAVR------RARAGLKDPKRPVGSFIFLGPTGVGKTELA 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          ++++++++ E   V R V      +       + E+ R +      
Sbjct: 561 RALAEALFGDEDALVRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVL 620

Query: 124 ----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +    +L  L          E  R     G   D    + +  ++  +S  
Sbjct: 621 LDEIEKAHPDVFNILLQVL----------EDGRLTDAKGRTVDFRNTVIIMTSNVGLSTI 670

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              G                      +K++  V++      R E    ID 
Sbjct: 671 KSVGRVGFAAQADQN-------EAEYEKMKERVEEALKRTFRPEFLNRIDE 714


>gi|311694971|gb|ADP97844.1| ATP-dependent Clp protease ATP-binding subunit ClpA [marine
           bacterium HP15]
          Length = 756

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++              E      L  GPTGVGKT +
Sbjct: 453 RNLERDLKMTVFGQDPAIESLSTAIK-----LARAGLKAPEKPEGAFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA++ G   ++ +++++ E            GYVG +   ++ + V+   + 
Sbjct: 508 TKQLAKVLGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTESVNKHPHC 562


>gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 688

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    ++ RDL D A
Sbjct: 220 RIPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASRV-RDLFDKA 277

Query: 111 INIV 114
              +
Sbjct: 278 KKTM 281


>gi|158335287|ref|YP_001516459.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305528|gb|ABW27145.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 630

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + +   
Sbjct: 206 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAK 264

Query: 108 DVAINIVRESRRDEV 122
           + A  I+     D V
Sbjct: 265 ENAPCIIFIDEIDAV 279


>gi|22124822|ref|NP_668245.1| protein disaggregation chaperone [Yersinia pestis KIM 10]
 gi|45440507|ref|NP_992046.1| protein disaggregation chaperone [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957649|gb|AAM84496.1|AE013694_1 heat shock protein [Yersinia pestis KIM 10]
 gi|45435364|gb|AAS60923.1| Clp ATPase [Yersinia pestis biovar Microtus str. 91001]
          Length = 864

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 569 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 623 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 654


>gi|329297088|ref|ZP_08254424.1| protein disaggregation chaperone [Plautia stali symbiont]
          Length = 857

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHARVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|300113414|ref|YP_003759989.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           watsonii C-113]
 gi|299539351|gb|ADJ27668.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosococcus
           watsonii C-113]
          Length = 753

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S  ++ + L R I GQ  A  A++ A++              +    + L  GPTGVGKT
Sbjct: 452 SLAKLETNLKRVIFGQDKAIEALSAAIK-----MSRSGLGDTDRPVGSFLFSGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            ++R+LA +     I+ +++++ E            GYVG +   ++ + +
Sbjct: 507 EVTRQLAHILSIELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAI 557


>gi|254524598|ref|ZP_05136653.1| ATP-dependent chaperone ClpB [Stenotrophomonas sp. SKA14]
 gi|219722189|gb|EED40714.1| ATP-dependent chaperone ClpB [Stenotrophomonas sp. SKA14]
          Length = 859

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ++A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 560 MEEVLHNRVVGQEEAIKVVSDAVR------RSRAGLSDPNRPAGSFLFLGPTGVGKTELC 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 614 KSLAEFLFDSADAMIRIDMSEFMEKHSVAR 643


>gi|154507941|ref|ZP_02043583.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797575|gb|EDN79995.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC
           17982]
          Length = 866

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 568 MEDELGKRLIGQKDAVRAVSDAVR------RSRAGLSDPNRPTGSFLFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++++E   V R V
Sbjct: 622 KALAEFLFDDERAMVRIDMSEYSEKHSVARLV 653


>gi|153807421|ref|ZP_01960089.1| hypothetical protein BACCAC_01700 [Bacteroides caccae ATCC 43185]
 gi|149129783|gb|EDM20995.1| hypothetical protein BACCAC_01700 [Bacteroides caccae ATCC 43185]
          Length = 709

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|28493555|ref|NP_787716.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
 gi|81437733|sp|Q83FV7|FTSH_TROWT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28476597|gb|AAO44685.1| cell division protein FtsH [Tropheryma whipplei str. Twist]
          Length = 666

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           ++      +E+       + G  +A   +      L +  + ++L A +     PK +LL
Sbjct: 146 RMRSRLVSKEMPKVRFTDVAGADEAVEELQEIKDFLSDPDKYRKLGARI-----PKGVLL 200

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 201 FGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 250


>gi|226944901|ref|YP_002799974.1| ATP-dependent clp protease, ATP-binding subunit, ClipA [Azotobacter
           vinelandii DJ]
 gi|226719828|gb|ACO78999.1| ATP-dependent clp protease, ATP-binding subunit, ClipA [Azotobacter
           vinelandii DJ]
          Length = 756

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLATAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 617

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEGAKLELNEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|148826496|ref|YP_001291249.1| ATP-dependent chaperone ClpB [Haemophilus influenzae PittEE]
 gi|229845911|ref|ZP_04466023.1| ClpB [Haemophilus influenzae 7P49H1]
 gi|148716656|gb|ABQ98866.1| ClpB [Haemophilus influenzae PittEE]
 gi|229810915|gb|EEP46632.1| ClpB [Haemophilus influenzae 7P49H1]
          Length = 856

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPISSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|194366917|ref|YP_002029527.1| ATP-dependent chaperone ClpB [Stenotrophomonas maltophilia R551-3]
 gi|194349721|gb|ACF52844.1| ATP-dependent chaperone ClpB [Stenotrophomonas maltophilia R551-3]
          Length = 861

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ++A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEVLHNRVVGQEEAIKVVSDAVR------RSRAGLSDPNRPAGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KSLAEFLFDSADAMIRIDMSEFMEKHSVAR 645


>gi|90416125|ref|ZP_01224057.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2207]
 gi|90331850|gb|EAS47064.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium
           HTCC2207]
          Length = 649

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V+  +       R++R           +PK +L+VGP G GKT +++ +
Sbjct: 158 DVAGVDEAKEDVSELVDFLSDPTRFQRLGG-------RIPKGVLMVGPPGTGKTLLAKAI 210

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 AGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQAKKQAPCIIFIDEIDAV 261


>gi|73539018|ref|YP_299385.1| FtsH-2 peptidase [Ralstonia eutropha JMP134]
 gi|72122355|gb|AAZ64541.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Ralstonia
           eutropha JMP134]
          Length = 627

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +       R+RR           +PK +LL+G  G GKT ++R +
Sbjct: 173 DVAGIDEAKAELMEVVDFLKEPQRYRRLGG-------KIPKGVLLLGAPGTGKTLLARAV 225

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 226 AGEAGVPFFSMSGSEFVEL-FVGVGAARV-RDLFAQA 260


>gi|54293795|ref|YP_126210.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Lens]
 gi|53753627|emb|CAH15085.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Lens]
          Length = 755

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A+A A++         + LR+   P    L  GPTGVGK
Sbjct: 451 TLRNLERDLKLLVYGQDQAITALASAIK------LGRSGLREPQKPVGCFLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 561


>gi|327394943|dbj|BAK12365.1| chaperone ClpB [Pantoea ananatis AJ13355]
          Length = 861

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQDEAVEAVSNAIR------RSRAGLADPNRPVGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KSLANFLFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 704

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|302306319|ref|NP_982566.2| AAR025Cp [Ashbya gossypii ATCC 10895]
 gi|299788460|gb|AAS50390.2| AAR025Cp [Ashbya gossypii ATCC 10895]
          Length = 726

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   + + L A +     P+  +L GP G GKT +++  A
Sbjct: 251 KDVAGCDEAKMEIMEFVDFLKTPEKYRALGAQI-----PRGAILSGPPGTGKTLLAKATA 305

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF+ V  ++F E+ +VG    ++ RDL + A  +
Sbjct: 306 GEAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFENARKM 342


>gi|291618563|ref|YP_003521305.1| ClpB [Pantoea ananatis LMG 20103]
 gi|291153593|gb|ADD78177.1| ClpB [Pantoea ananatis LMG 20103]
          Length = 861

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQDEAVEAVSNAIR------RSRAGLADPNRPVGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KSLANFLFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|262408311|ref|ZP_06084858.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262353863|gb|EEZ02956.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 717

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|254429405|ref|ZP_05043112.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax
           sp. DG881]
 gi|196195574|gb|EDX90533.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax
           sp. DG881]
          Length = 754

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ +A   ++ A++             +     + +  GPTG
Sbjct: 445 SDKELLRNLERDLKMTVFGQDEAIDTISAAIK-----LSRAGLKGEHKPIGSFMFAGPTG 499

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT +SR+LAR  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 500 VGKTEVSRQLARALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKTPH 559

Query: 113 I 113
            
Sbjct: 560 C 560


>gi|190575587|ref|YP_001973432.1| putative heat shock chaperone ClpB [Stenotrophomonas maltophilia
           K279a]
 gi|190013509|emb|CAQ47144.1| putative heat shock chaperone ClpB [Stenotrophomonas maltophilia
           K279a]
          Length = 861

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ++A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEVLHNRVVGQEEAIKVVSDAVR------RSRAGLSDPNRPAGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KSLAEFLFDSADAMIRIDMSEFMEKHSVAR 645


>gi|1483215|emb|CAA68141.1| chloroplast FtsH protease [Arabidopsis thaliana]
          Length = 709

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK   + V   L+N  +   L A +     PK  LLVGP G GKT ++R +A 
Sbjct: 263 DVAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAG 317

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF      +F E+ +VG    ++ RDL + A
Sbjct: 318 EAGVPFFSSRPQEFVEL-FVGVGASRV-RDLFEKA 350


>gi|218930300|ref|YP_002348175.1| protein disaggregation chaperone [Yersinia pestis CO92]
 gi|54035780|sp|Q74X11|CLPB_YERPE RecName: Full=Chaperone protein ClpB
 gi|115348911|emb|CAL21868.1| Clp ATPase [Yersinia pestis CO92]
          Length = 857

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|15618906|ref|NP_225192.1| ATP-dependent zinc protease [Chlamydophila pneumoniae CWL029]
 gi|15836529|ref|NP_301053.1| ATP-dependent zinc protease [Chlamydophila pneumoniae J138]
 gi|16752029|ref|NP_445395.1| cell division protein FtsH, putative [Chlamydophila pneumoniae
           AR39]
 gi|33242367|ref|NP_877308.1| hypothetical protein CpB1036 [Chlamydophila pneumoniae TW-183]
 gi|4377327|gb|AAD19135.1| ATP-dependent zinc protease [Chlamydophila pneumoniae CWL029]
 gi|7189768|gb|AAF38646.1| cell division protein FtsH, putative [Chlamydophila pneumoniae
           AR39]
 gi|8979371|dbj|BAA99205.1| ATP-dependent zinc protease [Chlamydophila pneumoniae J138]
 gi|33236878|gb|AAP98965.1| FtsH [Chlamydophila pneumoniae TW-183]
 gi|269302799|gb|ACZ32899.1| ATP-dependent metallopeptidase HflB [Chlamydophila pneumoniae
           LPCoLN]
          Length = 910

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 15/116 (12%)

Query: 3   LTFNFSP-REIVSELDR----YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           ++F  SP R ++   ++     + G ++AK  +      L+N  +   L   +     PK
Sbjct: 407 MSFGKSPARMLLKGQNKVTFADVAGIEEAKEELIEIVDFLKNPNKFTSLGGRI-----PK 461

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +LL+GP G GKT I++ ++  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 462 GVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 515


>gi|225181447|ref|ZP_03734890.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
 gi|225167845|gb|EEG76653.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT
           1]
          Length = 652

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 93/273 (34%), Gaps = 35/273 (12%)

Query: 13  VSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            S     + G  + K  +   +   +   +  +L A +     PK +LLVGP G GKT I
Sbjct: 148 KSVTFNDVAGADEEKAELVEIVEFLKEPRKFIELGARI-----PKGVLLVGPPGTGKTLI 202

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R +A  AG PF  +  + F E+ +VG     V  +  +    A  I+     D V  Q 
Sbjct: 203 ARAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFENAKKSAPCIIFIDEIDAVGRQR 261

Query: 127 ----------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIE 168
                           ++L  + G  A          N  ++    L      D+++ + 
Sbjct: 262 GAGLGGGHDEREQTLNQLLVEMDGFDANEGIIIIAATNRPDILDPALLRPGRFDRQVTVT 321

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D         +         ++          G       +V      L    S +LI
Sbjct: 322 LPDVRGREEILGVHARNKPLQPDVDLSVIARRSPGFSGADLENVINEGALLAGRRSKKLI 381

Query: 229 DMDTVHRDSIQMV----ENYGIVFLDEFDKIVA 257
            M  +  ++I+ V    E    V  D   KIVA
Sbjct: 382 SMSEL-EEAIERVVAGTEKKSRVISDFEKKIVA 413


>gi|254433238|ref|ZP_05046746.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           oceani AFC27]
 gi|207089571|gb|EDZ66842.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosococcus
           oceani AFC27]
          Length = 734

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S  ++ + L R I GQ  A  A+  A++              +    + L  GPTGVGKT
Sbjct: 432 SLAKLEANLKRVIFGQDKAIEALGAAIK-----MSRSGLGDTDRPVGSFLFSGPTGVGKT 486

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            ++R+LA + G   I+ +++++ E            GYVG +   ++ + +
Sbjct: 487 EVTRQLAHILGIELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAI 537


>gi|111225976|ref|YP_716770.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
 gi|111153508|emb|CAJ65266.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
          Length = 872

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL   +IGQ  A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MESELHARVIGQDQAVRAVSDAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAVVRIDMSEYAEKHSVAR 651


>gi|94268347|ref|ZP_01291151.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [delta
           proteobacterium MLMS-1]
 gi|93451649|gb|EAT02438.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [delta
           proteobacterium MLMS-1]
          Length = 386

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  ++     L++  +  +L   +     PK +LL+G  G GKT +++ +A
Sbjct: 154 KDVAGIDEAKEDLSEIIDFLKDPGKFTRLGGRI-----PKGVLLMGAPGTGKTLLAKAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKSAPCIIFIDEIDAV 258


>gi|317049247|ref|YP_004116895.1| ATP-dependent chaperone ClpB [Pantoea sp. At-9b]
 gi|316950864|gb|ADU70339.1| ATP-dependent chaperone ClpB [Pantoea sp. At-9b]
          Length = 857

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHARVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|284990567|ref|YP_003409121.1| ATPase AAA-2 domain-containing protein [Geodermatophilus obscurus
           DSM 43160]
 gi|284063812|gb|ADB74750.1| ATPase AAA-2 domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 847

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ DA R VA A+R    R ++     D     + L +GPTGVGKT ++R
Sbjct: 532 LEDHLHQRVVGQDDAVRVVAEAVR----RSRVGLGDPD-RPIGSFLFLGPTGVGKTELAR 586

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LA          I++++++F E   V R V  
Sbjct: 587 ALAEALFGDEDRMIRLDMSEFQERHTVSRLVGS 619



 Score = 38.4 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 43/250 (17%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI------ 228
            I +F   G   VG   L+   ++ +     + IR+ + +      R    RL+      
Sbjct: 567 PIGSFLFLGPTGVGKTELARALAEALFGDEDRMIRLDMSE---FQERHTVSRLVGSPPGY 623

Query: 229 ----DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDL 275
               D   +  ++++    Y +V LDE +K         +   D G         V    
Sbjct: 624 VGYEDAGQLT-EAVRR-RPYSVVLLDEIEKAHPDVFNTLLQVLDDGRLTDSQGRTVDFKN 681

Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAF----------HVSRPADLLPEIQGRFPVRVH 325
             L+  S++ ++        + F A  A                    PE   R    V 
Sbjct: 682 TVLIMTSNLGSELIQGRNTPLGFGAGNAAASDDGLRERLLRRLREQFRPEFLNRVDEIVV 741

Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385
            + L       I       L+ + +  +  + I +  T++++  +A+            G
Sbjct: 742 FQQLETEQLAQITRL----LLDETRRRLAAQDIEVTVTDEAVTWIAEHGFE-----PQFG 792

Query: 386 ARRLQTVMER 395
           AR L+  ++R
Sbjct: 793 ARPLRRAIQR 802


>gi|212542291|ref|XP_002151300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
 gi|210066207|gb|EEA20300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC
           18224]
          Length = 788

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L N  R   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 322 DVHGCDEAKDELQEVVEFLLNPERFSTLGGKL-----PKGVLLVGPPGTGKTLLARAVAG 376

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            AG PF  +  ++F E+ YVG   +++ RDL   A                 ++R+E   
Sbjct: 377 EAGVPFFYMSGSEFDEV-YVGVGAKRV-RDLFAQARAKAPAIIFIDELDAIGAKRNERDA 434

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   ++L  L G + TS        N  ++  K L      D+ + + + D    +
Sbjct: 435 AYVKQTLNQLLTELDGFSQTSGVIILAATNYPQLLDKALTRPGRFDRRVVVGLPDVRGRM 494

Query: 177 SNF 179
              
Sbjct: 495 EIL 497


>gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 617

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT ++R +A 
Sbjct: 163 DVAGIEGAKLELNEVVDFLKNADRFTAIGAKI-----PKGVLLVGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 250


>gi|145632228|ref|ZP_01787963.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634718|ref|ZP_01790426.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           PittAA]
 gi|260579950|ref|ZP_05847780.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW]
 gi|144987135|gb|EDJ93665.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267884|gb|EDK07880.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           PittAA]
 gi|260093234|gb|EEW77167.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW]
          Length = 856

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|92115196|ref|YP_575124.1| ATP-dependent metalloprotease FtsH [Chromohalobacter salexigens DSM
           3043]
 gi|91798286|gb|ABE60425.1| membrane protease FtsH catalytic subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 655

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            +  +I +     + G  +AK     +   L++  + Q+L   +     P+ +L+VGP G
Sbjct: 147 LTQDQIKTTF-ADVAGCDEAKEEVEELVDFLKDPSKFQRLGGQI-----PRGVLMVGPPG 200

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT +++ ++  A  PF  +  + F E+ +VG     V  +       A  I+     D
Sbjct: 201 TGKTLLAKAISGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKQAPCIIFIDEID 259

Query: 121 EV 122
            V
Sbjct: 260 AV 261


>gi|71279835|ref|YP_269594.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Colwellia
           psychrerythraea 34H]
 gi|71145575|gb|AAZ26048.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Colwellia
           psychrerythraea 34H]
          Length = 752

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   ++  +     R        +E    + L  GPTGVGKT I
Sbjct: 448 KNLDRNLKLVVFGQDQAVDELSSVI-----RLSRAGLGSEEKPVGSFLFAGPTGVGKTEI 502

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA++ G   ++ +++++ E            GYVG     ++ D V    + V    
Sbjct: 503 TQQLAKILGIELLRFDMSEYMEKHAVSRLIGAPPGYVGYEQGGLLTDGVIKHPHAV--VL 560

Query: 119 RDEVREQASINAEERILDALVGKTATSNT 147
            DE+ E+A  +    +L  +   T T N 
Sbjct: 561 LDEI-EKAHEDVYNILLQVMDHGTLTDNN 588


>gi|189347884|ref|YP_001944413.1| ATPase AAA-2 domain protein [Chlorobium limicola DSM 245]
 gi|189342031|gb|ACD91434.1| ATPase AAA-2 domain protein [Chlorobium limicola DSM 245]
          Length = 442

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ +A  AV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEDELHKRVIGQDEAVSAVSEAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDEDALIRIDMSEYMESHNVSRLV 220


>gi|51595198|ref|YP_069389.1| protein disaggregation chaperone [Yersinia pseudotuberculosis IP
           32953]
 gi|108808757|ref|YP_652673.1| protein disaggregation chaperone [Yersinia pestis Antiqua]
 gi|108810986|ref|YP_646753.1| protein disaggregation chaperone [Yersinia pestis Nepal516]
 gi|145600170|ref|YP_001164246.1| protein disaggregation chaperone [Yersinia pestis Pestoides F]
 gi|153947726|ref|YP_001402169.1| protein disaggregation chaperone [Yersinia pseudotuberculosis IP
           31758]
 gi|153997675|ref|ZP_02022775.1| Clp ATPase [Yersinia pestis CA88-4125]
 gi|162419640|ref|YP_001607805.1| protein disaggregation chaperone [Yersinia pestis Angola]
 gi|165926588|ref|ZP_02222420.1| chaperone ClpB [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166009977|ref|ZP_02230875.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213111|ref|ZP_02239146.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399363|ref|ZP_02304887.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421665|ref|ZP_02313418.1| chaperone ClpB [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423529|ref|ZP_02315282.1| chaperone ClpB [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470275|ref|ZP_02334979.1| protein disaggregation chaperone [Yersinia pestis FV-1]
 gi|170025564|ref|YP_001722069.1| protein disaggregation chaperone [Yersinia pseudotuberculosis
           YPIII]
 gi|186894216|ref|YP_001871328.1| protein disaggregation chaperone [Yersinia pseudotuberculosis
           PB1/+]
 gi|229838891|ref|ZP_04459050.1| Clp ATPase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896559|ref|ZP_04511726.1| Clp ATPase [Yersinia pestis Pestoides A]
 gi|229899458|ref|ZP_04514601.1| Clp ATPase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901202|ref|ZP_04516325.1| Clp ATPase [Yersinia pestis Nepal516]
 gi|270489387|ref|ZP_06206461.1| ATP-dependent chaperone protein ClpB [Yersinia pestis KIM D27]
 gi|294504989|ref|YP_003569051.1| Clp ATPase [Yersinia pestis Z176003]
 gi|51588480|emb|CAH20088.1| ATP-dependent protease, Hsp 100, part of novel multi-chaperone
           system with DnaK, DnaJ, and GrpE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774634|gb|ABG17153.1| Clp ATPase [Yersinia pestis Nepal516]
 gi|108780670|gb|ABG14728.1| Clp ATPase [Yersinia pestis Antiqua]
 gi|145211866|gb|ABP41273.1| Clp ATPase [Yersinia pestis Pestoides F]
 gi|149289312|gb|EDM39392.1| Clp ATPase [Yersinia pestis CA88-4125]
 gi|152959221|gb|ABS46682.1| chaperone ClpB [Yersinia pseudotuberculosis IP 31758]
 gi|162352455|gb|ABX86403.1| chaperone ClpB [Yersinia pestis Angola]
 gi|165921516|gb|EDR38713.1| chaperone ClpB [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990884|gb|EDR43185.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205898|gb|EDR50378.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960584|gb|EDR56605.1| chaperone ClpB [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051867|gb|EDR63275.1| chaperone ClpB [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057699|gb|EDR67445.1| chaperone ClpB [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752098|gb|ACA69616.1| ATP-dependent chaperone ClpB [Yersinia pseudotuberculosis YPIII]
 gi|186697242|gb|ACC87871.1| ATP-dependent chaperone ClpB [Yersinia pseudotuberculosis PB1/+]
 gi|229681927|gb|EEO78020.1| Clp ATPase [Yersinia pestis Nepal516]
 gi|229687860|gb|EEO79933.1| Clp ATPase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695257|gb|EEO85304.1| Clp ATPase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700337|gb|EEO88369.1| Clp ATPase [Yersinia pestis Pestoides A]
 gi|262366978|gb|ACY63535.1| Clp ATPase [Yersinia pestis D182038]
 gi|270337891|gb|EFA48668.1| ATP-dependent chaperone protein ClpB [Yersinia pestis KIM D27]
 gi|294355448|gb|ADE65789.1| Clp ATPase [Yersinia pestis Z176003]
 gi|320016467|gb|ADW00039.1| Clp ATPase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 857

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|68249453|ref|YP_248565.1| ClpB [Haemophilus influenzae 86-028NP]
 gi|68057652|gb|AAX87905.1| ClpB [Haemophilus influenzae 86-028NP]
 gi|309973650|gb|ADO96851.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           R2846]
          Length = 856

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|281210219|gb|EFA84387.1| peptidase M41 [Polysphondylium pallidum PN500]
          Length = 803

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + + G  +AK  +   + N  +  +   D+  ++ P+  +L+GP G GKT +++  A 
Sbjct: 334 LFKDVAGLGEAKVEIEEFV-NFLKDPKKYNDIGAKI-PRGAILIGPPGTGKTLMAKATAG 391

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF     + F E+ +VG    ++ RDL + A
Sbjct: 392 EANVPFFSTSGSDFVEM-FVGVGPARV-RDLFEQA 424


>gi|145629931|ref|ZP_01785713.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae
           R3021]
 gi|229844737|ref|ZP_04464876.1| ClpB [Haemophilus influenzae 6P18H1]
 gi|144984212|gb|EDJ91635.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae
           R3021]
 gi|229812451|gb|EEP48141.1| ClpB [Haemophilus influenzae 6P18H1]
          Length = 856

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|15603569|ref|NP_246643.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|54035898|sp|Q9CKC0|CLPB_PASMU RecName: Full=Chaperone protein ClpB
 gi|12722113|gb|AAK03788.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 855

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 561 MEEELHKRVIGQHEAIEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 615 KTLANFLFDDENAMVRIDMSEFMEKHSVSRLV 646


>gi|16272799|ref|NP_439019.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           Rd KW20]
 gi|1168973|sp|P44403|CLPB_HAEIN RecName: Full=Chaperone protein ClpB
 gi|1573874|gb|AAC22518.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Haemophilus
           influenzae Rd KW20]
          Length = 856

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|315929039|gb|EFV08279.1| ftsH domain protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 456

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 64  ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 118

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  A  PF     + F EI YVG     V ++      +A +IV     D V + 
Sbjct: 119 IAKAVAGEAEVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKA 177

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 178 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLP 237

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 238 DFKDRLKILEIYMKDKNNNVNLNKI 262


>gi|153815238|ref|ZP_01967906.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
 gi|145847497|gb|EDK24415.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756]
          Length = 595

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+ K  +A  +   +   +  Q+ A +     PK +LL GP G GKT +++ +A  
Sbjct: 149 VAGLQEEKEELAEIVDFLKAPKKYVQVGARI-----PKGVLLEGPPGTGKTLLAKAVAGE 203

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           AG PF  +  + F E+ +VG     V  + +D    A  I+     D V
Sbjct: 204 AGVPFFSISGSDFVEM-FVGVGASRVRDLFQDAKKNAPCIIFIDEIDAV 251


>gi|190359454|sp|A2ZVG7|FTSH9_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 9,
           chloroplastic/mitochondrial; Short=OsFTSH9; Flags:
           Precursor
          Length = 784

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           +L  +  P + V    + + G  DAK+ +      L+N  +  +L   L     PK ILL
Sbjct: 313 ELNKDIMPEKNVKTF-KDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKL-----PKGILL 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G  G GKT +++ +A  AG PF     ++F E+ +VG    ++ R L   A
Sbjct: 367 TGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRV-RSLFQAA 416


>gi|54296839|ref|YP_123208.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Paris]
 gi|53750624|emb|CAH12031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila str. Paris]
          Length = 755

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A+A A++         + LR+   P    L  GPTGVGK
Sbjct: 451 TLRNLERDLKLLVYGQDQAITALASAIK------LGRSGLREPQKPVGCFLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 561


>gi|88703372|ref|ZP_01101088.1| ATP-dependent clp protease, ATP-binding subunit ClpA
           [Congregibacter litoralis KT71]
 gi|88702086|gb|EAQ99189.1| ATP-dependent clp protease, ATP-binding subunit ClpA
           [Congregibacter litoralis KT71]
          Length = 765

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 19/148 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ S L   + GQ DA  +++ +++              +    + LL GPTGVGKT ++
Sbjct: 455 KLESNLKMVVFGQDDAVSSLSTSIK-----MARAGLRGGDKPIGSFLLAGPTGVGKTEVT 509

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRR 119
           R+LA++ G   I+ +++++ E            GYVG +   +   L D A         
Sbjct: 510 RQLAKILGLELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAATKHPHAVVL 566

Query: 120 DEVREQASINAEERILDALVGKTATSNT 147
            +  E+A       +L  +   T T N 
Sbjct: 567 LDEIEKAHPEVFNLLLQVMDHGTLTDNN 594


>gi|121605505|ref|YP_982834.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans
           CJ2]
 gi|120594474|gb|ABM37913.1| membrane protease FtsH catalytic subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 642

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVKEVVDFLKDPAKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKGIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFDNAKKNAPCIIFIDEIDAV 265


>gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 704

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|312144275|ref|YP_003995721.1| ATPase AAA-2 domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904926|gb|ADQ15367.1| ATPase AAA-2 domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 817

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 LEEELHKRVIGQDEAITAVSEAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+V+++++ E   V R V  
Sbjct: 555 KTLAETMFNDEDAMIRVDMSEYMEKHSVSRLVGS 588


>gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1002

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G+ +A    R +   L    R   L A++     P+ +LL GP G GKT ++R +A
Sbjct: 242 NDVAGEDEAVAELREITEFLTAPERFHALGAEI-----PRGVLLYGPPGTGKTLLARAVA 296

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 297 GEAGVPFYSISASEFVEM-FVGVGASRV-RDLFNKA 330


>gi|126734040|ref|ZP_01749787.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. CCS2]
 gi|126716906|gb|EBA13770.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           sp. CCS2]
          Length = 871

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A R+VA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEEELGKRVIGQKTAVRSVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 614 KAVAEYLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
 gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
          Length = 637

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLEEVVTFLKQPEKFTSVGAQI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
 gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
          Length = 735

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 9   PREI----VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           P+E+    V      + G  +AK     +   L++  +  +L   L     PK +LLVGP
Sbjct: 231 PQEVNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRL-----PKGVLLVGP 285

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT ++R +A  A  PF     ++F E+  VG+   ++ RDL D A
Sbjct: 286 PGTGKTLLARAIAGEAQVPFFHTSGSEFDEV-LVGQGARRV-RDLFDKA 332


>gi|293372244|ref|ZP_06618629.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CMC 3f]
 gi|292632686|gb|EFF51279.1| ATP-dependent metallopeptidase HflB [Bacteroides ovatus SD CMC 3f]
          Length = 697

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 178 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 235

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 236 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 294

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 295 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 354

Query: 176 ISNFDIP 182
              F + 
Sbjct: 355 KEVFGVH 361


>gi|28572335|ref|NP_789115.1| FtsH-like cell division protein [Tropheryma whipplei TW08/27]
 gi|28410466|emb|CAD66852.1| FtsH-like putative cell division protein [Tropheryma whipplei
           TW08/27]
          Length = 666

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           ++      +E+       + G  +A   +      L +  + ++L A +     PK +LL
Sbjct: 146 RMRSRLVSKEMPKVRFTDVAGADEAVEELQEIKDFLSDPDKYRKLGARI-----PKGVLL 200

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 201 FGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 250


>gi|302038046|ref|YP_003798368.1| cell division protease FtsH [Candidatus Nitrospira defluvii]
 gi|300606110|emb|CBK42443.1| Cell division protease FtsH [Candidatus Nitrospira defluvii]
          Length = 604

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  V      L++  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGIEEAKEEVLEIIEFLKDPRKFQKLGGRI-----PKGVLIVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 210 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKHAPCIIFIDEIDAV 258


>gi|326792449|ref|YP_004310270.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326543213|gb|ADZ85072.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 655

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 31/258 (12%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N+ R  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 182 IVDFLKNQNRYIQVGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 236

Query: 90  TEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKTATS 145
            E+ +VG    ++ RDL +     A  IV     D V  +              G     
Sbjct: 237 VEM-FVGVGASRV-RDLFEQAKKNAPCIVFIDEIDAVGRKRGA-----------GLGGGH 283

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           + RE    +L          +  +   +++ ++   P     G  +   +  +    GRK
Sbjct: 284 DEREQTLNQLLVEMDGFGANEGVIVMAATNRADILDPALLRPGRFDRQIVVGRPDVKGRK 343

Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265
             I++  +     L  D     +D++T+ + +           ++E   + AR +   I 
Sbjct: 344 DIIKIHAKG--KPLNED-----VDIETIAKITSGFTGADLANLMNEAALLTARHNKRAID 396

Query: 266 VSREGVQRDLLPLVEGSS 283
           +  E VQ+  + +  G+ 
Sbjct: 397 M--EEVQKAFVKIGIGTE 412


>gi|284053803|ref|ZP_06384013.1| endopeptidase Clp ATP-binding chain [Arthrospira platensis str.
           Paraca]
          Length = 320

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L R +IGQQ A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 194 QLESHLHRRVIGQQQAVEAVSAAIR------RARAGMKDPGRPIGSFLFMGPTGVGKTEL 247

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 248 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 280


>gi|260771820|ref|ZP_05880738.1| cell division protein FtsH [Vibrio metschnikovii CIP 69.14]
 gi|260613112|gb|EEX38313.1| cell division protein FtsH [Vibrio metschnikovii CIP 69.14]
          Length = 522

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            S  +I +     + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G
Sbjct: 23  MSEEQIKTNF-TDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPG 76

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GKT +++ +A  A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 77  TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 121


>gi|260598973|ref|YP_003211544.1| protein disaggregation chaperone [Cronobacter turicensis z3032]
 gi|260218150|emb|CBA32972.1| Chaperone protein clpB [Cronobacter turicensis z3032]
          Length = 857

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|221053596|ref|XP_002258172.1| ATP-dependent Clp protease subunit [Plasmodium knowlesi strain H]
 gi|193808005|emb|CAQ38709.1| ATP-dependent Clp protease subunit, putative [Plasmodium knowlesi
           strain H]
          Length = 1050

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 30/251 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + IIGQ DA R V+ A+      Q+    + D   P  +++ +GPTGVGKT +S
Sbjct: 753 LENELHKQIIGQDDAVRIVSKAV------QRSRVGMNDPKRPIASLMFLGPTGVGKTELS 806

Query: 71  RRLARLA-GAPFIKV--EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA +    P   +  +++++ E           I  L+  A   V   +   +    +
Sbjct: 807 KVLADVLFDTPDAVIHFDMSEYMEKH--------SISKLIGAAPGYVGYEQGGLL----T 854

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               ++    ++         +V+   LR  E      + ++ DT  +++NF        
Sbjct: 855 DAVRKKPYSIILFDEIEKAHPDVYNLLLRVIE------EGKLTDTKGNLANFRNTIIIFT 908

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
             L    +        +K KI+  V K   E  R E    ID D V  DS+   E   I 
Sbjct: 909 SNLGSQSILDLANDPNKKDKIKEQVMKSVRETFRPEFYNRID-DHVIFDSLSKKELKQIA 967

Query: 248 FLDEFDKIVAR 258
            + E +K+  R
Sbjct: 968 NI-EIEKVANR 977


>gi|149278172|ref|ZP_01884310.1| cell division protein, ATP-dependent metalloprotease [Pedobacter
           sp. BAL39]
 gi|149230938|gb|EDM36319.1| cell division protein, ATP-dependent metalloprotease [Pedobacter
           sp. BAL39]
          Length = 697

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ V      L+N  +   L   +     PK  LLVG  G GKT +++ +A
Sbjct: 213 NDVAGLEEAKQEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGSPGTGKTLLAKAVA 267

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 268 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 301


>gi|148360535|ref|YP_001251742.1| ATP binding protease component ClpA [Legionella pneumophila str.
           Corby]
 gi|296106399|ref|YP_003618099.1| ATP binding protease component [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282308|gb|ABQ56396.1| ATP binding protease component ClpA [Legionella pneumophila str.
           Corby]
 gi|295648300|gb|ADG24147.1| ATP binding protease component [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609612|emb|CBW99114.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella
           pneumophila 130b]
          Length = 755

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A+A A++         + LR+   P    L  GPTGVGK
Sbjct: 451 TLRNLERDLKLLVYGQDQAITALASAIK------LGRSGLREPQKPVGCFLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 561


>gi|52841054|ref|YP_094853.1| ATP binding protease component ClpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628165|gb|AAU26906.1| ATP binding protease component ClpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 757

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A+A A++         + LR+   P    L  GPTGVGK
Sbjct: 453 TLRNLERDLKLLVYGQDQAITALASAIK------LGRSGLREPQKPVGCFLFAGPTGVGK 506

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 507 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 563


>gi|73981824|ref|XP_540351.2| PREDICTED: similar to fidgetin-like 1 [Canis familiaris]
          Length = 689

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 393 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PK 450

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 451 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 508


>gi|88809073|ref|ZP_01124582.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805]
 gi|88787015|gb|EAR18173.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805]
          Length = 625

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 172 DVAGVDEAKDELTEIVDFLKTPERYTEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 227 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKN 262


>gi|317968672|ref|ZP_07970062.1| cell division protein FtsH [Synechococcus sp. CB0205]
          Length = 614

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 160 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 215 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|265753170|ref|ZP_06088739.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
 gi|263236356|gb|EEZ21851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_33FAA]
          Length = 745

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
 gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
          Length = 690

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +   +   ++  + +++ A +     PK +LLVGP G GKT ++R +A 
Sbjct: 170 DVAGADEEKQELVEIVDFLKDNRKFKKMGARI-----PKGVLLVGPPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 225 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 260


>gi|254432227|ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
 gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
          Length = 614

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 160 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 215 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|319427312|gb|ADV55386.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens 200]
          Length = 652

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|300864313|ref|ZP_07109191.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
 gi|300337702|emb|CBN54337.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
          Length = 904

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 589 QLEKHLHQRVIGQHEAVEAVSAAIR------RARAGMKDPGRPIGSFLFMGPTGVGKTEL 642

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          ++++++++ E   V R V
Sbjct: 643 ARALAEFLFDTDDAIVRIDMSEYMEKHSVSRLV 675


>gi|298693856|gb|ADI97078.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus aureus subsp. aureus ED133]
 gi|323439794|gb|EGA97511.1| endopeptidase [Staphylococcus aureus O11]
 gi|323443104|gb|EGB00724.1| endopeptidase [Staphylococcus aureus O46]
          Length = 818

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 108/284 (38%), Gaps = 26/284 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE 280
               +N  I+  D+  DKI   + G         + R +   +E
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIE 774



 Score = 43.4 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVID 415
             +      + GAR L + +   +E  L ++    + ++ K V +D
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVD 795


>gi|295086617|emb|CBK68140.1| ATP-dependent metalloprotease FtsH [Bacteroides xylanisolvens XB1A]
          Length = 719

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 199 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 256

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 257 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 315

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 316 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 375

Query: 176 ISNFDIP 182
              F + 
Sbjct: 376 KEVFGVH 382


>gi|237719262|ref|ZP_04549743.1| AAA-metalloprotease FtsH [Bacteroides sp. 2_2_4]
 gi|229451641|gb|EEO57432.1| AAA-metalloprotease FtsH [Bacteroides sp. 2_2_4]
          Length = 716

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
 gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
          Length = 666

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|197284295|ref|YP_002150167.1| protein disaggregation chaperone [Proteus mirabilis HI4320]
 gi|227357800|ref|ZP_03842148.1| chaperone ClpB [Proteus mirabilis ATCC 29906]
 gi|194681782|emb|CAR41000.1| chaperone ClpB (heat-shock protein F84.1) [Proteus mirabilis
           HI4320]
 gi|227161910|gb|EEI46928.1| chaperone ClpB [Proteus mirabilis ATCC 29906]
          Length = 858

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHRRVIGQDEAVNAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALADFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|113955040|ref|YP_730039.1| cell division protein FtsH3 [Synechococcus sp. CC9311]
 gi|113882391|gb|ABI47349.1| cell division protein FtsH3 [Synechococcus sp. CC9311]
          Length = 632

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 177 DVAGVDEAKDELNEIVDFLKTPERYTDIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 231

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 232 EAGVPFFIISGSEFVEL-FVGAGAARV-RDLFEQAKKN 267


>gi|17864015|gb|AAL47016.1|AF449501_1 ClpB ATP protease [Paracoccidioides brasiliensis]
          Length = 792

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L + ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 492 QMESFLHQRVVGQDEAVIAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 545

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          I++++++F E   V R V
Sbjct: 546 TKALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 578


>gi|94311126|ref|YP_584336.1| ATP-dependent metalloprotease FtsH [Cupriavidus metallidurans CH34]
 gi|122987908|sp|Q1LLA9|FTSH_RALME RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|93354978|gb|ABF09067.1| protease, ATP-dependent zinc-metallo [Cupriavidus metallidurans
           CH34]
          Length = 649

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 171 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 226 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 274


>gi|126175446|ref|YP_001051595.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS155]
 gi|153001797|ref|YP_001367478.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160876530|ref|YP_001555846.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
 gi|125998651|gb|ABN62726.1| membrane protease FtsH catalytic subunit [Shewanella baltica OS155]
 gi|151366415|gb|ABS09415.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160862052|gb|ABX50586.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
          Length = 657

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|315646472|ref|ZP_07899590.1| Vesicle-fusing ATPase [Paenibacillus vortex V453]
 gi|315278115|gb|EFU41435.1| Vesicle-fusing ATPase [Paenibacillus vortex V453]
          Length = 500

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 31/229 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ +AK+ +  AL    R + +       L  K ILL GP G GKT +++  A   
Sbjct: 71  EEIGGQDNAKQELREALDFLIRHEDIKKFGIRPL--KGILLTGPPGTGKTLMAKAAAHYT 128

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ YVG    ++ RDL   A    R     E ++ A I  +E  +D 
Sbjct: 129 DSIFVAASGSEFVEM-YVGVGAGRV-RDLFKDA----RSRAAKENKQNAIIFIDE--IDV 180

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + GK      RE  +   +     D             I + D P    +   N  E+  
Sbjct: 181 IGGKREGGQQREYDQTLNQLLTEMD------------GIYSQDTPRILVIAATNRKEMLD 228

Query: 198 KVMGSGRKKKIRMSV----QKCYPELMRDES-----DRLIDMDTVHRDS 237
             +    +    + V    +K    ++   +        +D+D +  ++
Sbjct: 229 SALLRPGRFDRHIQVDLPDKKGRTHILNLHAGNKPLHEDVDLDKIAEEA 277


>gi|310814544|ref|YP_003962508.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25]
 gi|308753279|gb|ADO41208.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25]
          Length = 870

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ++A  AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 559 MEDELGRRVIGQREAVHAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 613 KAVAEFLFDDDTAMVRIDMSEFMEKHSVAR 642


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 293 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 346

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 347 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 389


>gi|187929108|ref|YP_001899595.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|187725998|gb|ACD27163.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
          Length = 628

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 584

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAIS 70
           V      + G  +A   +   +    +    P    D    +PK +LL+GP G GKT ++
Sbjct: 130 VETRFDDVAGVPEAAEELKEVI----KFLNEPKKFTDLGAKVPKGVLLIGPPGTGKTLLA 185

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + +A  +G PF+ +  ++F E+ +VG    ++ RDL + A
Sbjct: 186 KAIAGESGVPFLSIAASEFVEL-FVGVGASRV-RDLFEKA 223


>gi|71748992|ref|XP_827835.1| zinc metallopeptidase [Trypanosoma brucei TREU927]
 gi|70833219|gb|EAN78723.1| zinc metallopeptidase, putative [Trypanosoma brucei]
          Length = 569

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 29/193 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E+       +IG  +AK  V      L+N  +  +L A L     PK  LL G  G GKT
Sbjct: 82  EVKGTRFSDVIGIPEAKEEVRHYVEFLKNPNQFTRLGARL-----PKGCLLTGEPGTGKT 136

Query: 68  AISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
            +++ +A  A  PF     + F E+  G   + V ++  +    A  I+     D +  +
Sbjct: 137 LLAKAVAGEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARGAAPAIIFIDEIDAIGSR 196

Query: 126 ASINA------EERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEID 166
           A          E R ++ L+ +              A +N ++   K L      D++I+
Sbjct: 197 AGKRGGSVSSEENRTINQLLAELDGLNSGSDVLIVMAATNFQDNIDKALLREGRFDRKIN 256

Query: 167 IEVADTSSDISNF 179
           IE+ D ++ +  F
Sbjct: 257 IEMPDKAARVEVF 269


>gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205]
          Length = 626

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 9   PREIVSELDRYIIGQQDAKRAV--AIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64
           P   V+     + G  +AK  +   +A        + P         +PK +LLVGP G 
Sbjct: 155 PEAAVAVRFEDVAGINEAKEELQEVVAF------LKEPERFTAVGARIPKGVLLVGPPGT 208

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDE 121
           GKT +++ +A  AG PF  +  ++F E+ +VG     V  + R   + A  I+     D 
Sbjct: 209 GKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASRVRDLFRQAKEKAPCIIFIDEIDA 267

Query: 122 V 122
           V
Sbjct: 268 V 268


>gi|282863732|ref|ZP_06272790.1| ATP-dependent chaperone ClpB [Streptomyces sp. ACTE]
 gi|282561433|gb|EFB66977.1| ATP-dependent chaperone ClpB [Streptomyces sp. ACTE]
          Length = 866

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MESELGRRLIGQTEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I++++++++E   V R V
Sbjct: 621 ALADFLFDDERAMIRIDMSEYSEKHSVARLV 651


>gi|156541797|ref|XP_001602382.1| PREDICTED: similar to SD01613p [Nasonia vitripennis]
          Length = 1256

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P EI     + + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT 
Sbjct: 745 PNEIGVRF-KDVAGCEEAKIEIMEFV-NFLKNPQQYINLGAKI-PKGAILTGPPGTGKTL 801

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++  A  A  PF+ V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 802 LAKATAGEADVPFLTVSGSEFLEM-FVGVGPSRVRDMFAQARKHAPCILFIDEIDAVGRK 860


>gi|241663316|ref|YP_002981676.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|309782469|ref|ZP_07677193.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|240865343|gb|ACS63004.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|308918806|gb|EFP64479.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 628

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K     +   L++  + Q+L   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 155 DVAGCDESKEEVVELVDFLKDPQKFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKQAPCIVFIDEIDAV 258


>gi|33240371|ref|NP_875313.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237898|gb|AAP99965.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 638

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVEEAKEDLEEVVTFLKQPERFTSVGAKI-----PRGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|29349415|ref|NP_812918.1| metalloprotease FtsH [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341324|gb|AAO79112.1| AAA-metalloprotease FtsH, with ATPase domain [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 696

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 177 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 234

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 235 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 293

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 294 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 353

Query: 176 ISNFDIP 182
              F + 
Sbjct: 354 KEVFGVH 360


>gi|31742536|ref|NP_071399.2| fidgetin-like protein 1 [Homo sapiens]
 gi|112789543|ref|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens]
 gi|158563967|sp|Q6PIW4|FIGL1_HUMAN RecName: Full=Fidgetin-like protein 1
 gi|30354010|gb|AAH51867.1| Fidgetin-like 1 [Homo sapiens]
 gi|41393465|gb|AAS01996.1| unknown [Homo sapiens]
 gi|51094648|gb|EAL23899.1| fidgetin-like 1 [Homo sapiens]
 gi|119581379|gb|EAW60975.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|119581380|gb|EAW60976.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|190690423|gb|ACE86986.1| fidgetin-like 1 protein [synthetic construct]
          Length = 674

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|318042673|ref|ZP_07974629.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 614

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 160 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 215 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 250


>gi|189345901|ref|YP_001942430.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
 gi|189340048|gb|ACD89451.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
          Length = 652

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPK 54
             F  S  ++V+E D     + + G  +A   +   +    N  + Q++   +     PK
Sbjct: 190 FNFGKSRAKMVTEFDVKITFKDVAGVDEAVEELKETVEFLTNPEKFQKIGGKI-----PK 244

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+G  G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 245 GVLLLGSPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFEQAKKN 301


>gi|167957511|ref|ZP_02544585.1| ATP-dependent metalloprotease FtsH [candidate division TM7
           single-cell isolate TM7c]
          Length = 633

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 16  LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L   I G   AK     V   L++  + ++L A +     PK +LLVG  G GKT ++R 
Sbjct: 176 LFSDIAGNDSAKQDLEEVVDFLKHPKKYKELGAKI-----PKGVLLVGNPGTGKTMLARA 230

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           +A  A  PF  +  ++F E+ +VG    ++ RDL   A   
Sbjct: 231 VAGEANVPFFSISGSEFVEM-FVGVGASRV-RDLFSKAKKN 269


>gi|158337485|ref|YP_001518660.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307726|gb|ABW29343.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 634

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G ++AK  +   +       + P         +P+ +LL+GP G GKT +++ ++  
Sbjct: 167 DVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPRGVLLIGPPGTGKTLLAKAISGE 222

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           AG PF  +  ++F E+ +VG     V  + +   + A  +V     D V
Sbjct: 223 AGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCLVFIDEIDAV 270


>gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 637

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   +   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLQEVVTFLKQPEKFTSVGAQI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|308808914|ref|XP_003081767.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
 gi|116060233|emb|CAL56292.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
          Length = 795

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LRN  +  +L   L     PK +LL GP G GKT ++R +A
Sbjct: 304 KDVKGCDEAKEELQEIVEYLRNPDKFTRLGGKL-----PKGVLLTGPPGTGKTLLARAVA 358

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF     ++F E+ +VG   +++ R L   A
Sbjct: 359 GEADVPFFYRSGSEFEEM-FVGVGSKRV-RQLFAAA 392


>gi|330981386|gb|EGH79489.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 341

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 31  NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 85

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 86  TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 145

Query: 111 INI 113
            + 
Sbjct: 146 PHC 148


>gi|78211853|ref|YP_380632.1| FtsH peptidase [Synechococcus sp. CC9605]
 gi|78196312|gb|ABB34077.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 616

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii]
          Length = 867

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 113/302 (37%), Gaps = 45/302 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  ++K  +      ++NR R Q++ A +     PK +LLVGP G GKT ++R +A  
Sbjct: 166 IAGIDESKLELLEVVDFIKNRERYQEMGARM-----PKGVLLVGPPGSGKTMLARAVATE 220

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAEER 133
           A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S +A   
Sbjct: 221 ANVPYIYTSGPEFIEI-YVGQGAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSPSASN- 278

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD------------- 180
                          +   + L + +     + I V   ++ I   D             
Sbjct: 279 -------GAGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIV 331

Query: 181 -IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            +P     G   + E++ K + S         + +  P     + + L++  T+    + 
Sbjct: 332 YVPLPDVSGRKKILEIYIKKIKSNLNANDIERMSRLTPGFSGADLENLVNEATI----LA 387

Query: 240 MVENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTD 294
                 +V ++E     DK+        +  S    QR +    E G ++   +    TD
Sbjct: 388 TRNKKSLVTINELFEARDKVSMGPERKSLKQSEH--QRRITAYHEAGHAIVAYFLHPKTD 445

Query: 295 HI 296
            I
Sbjct: 446 PI 447


>gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 723

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    ++ RDL D A
Sbjct: 245 RIPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASRV-RDLFDKA 302

Query: 111 INIV 114
              +
Sbjct: 303 KKSM 306


>gi|260753989|ref|YP_003226882.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553352|gb|ACV76298.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 864

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ+DA +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEDWLGKRVIGQEDAVKAVSRAVR------RARAGLQDPSRPIGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 617 KALASFLFDDDRAMVRIDMSEYMEKHAVAR 646


>gi|237711935|ref|ZP_04542416.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
 gi|229454630|gb|EEO60351.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA]
          Length = 745

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
          Length = 661

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 161 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|168704817|ref|ZP_02737094.1| cell division protein FtsH [Gemmata obscuriglobus UQM 2246]
          Length = 693

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G + AKR +   +   ++  +  ++ A      +PK +LLVGP G GKT +++ +A
Sbjct: 211 EDVAGMESAKRELTEMVDYLKDPAKFTRVGA-----TVPKGVLLVGPPGTGKTLLAKAVA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  ++F ++ +VG     V  + R   + +  ++     D V
Sbjct: 266 GEANVPFFAISGSEFIQM-FVGVGASRVRDMFRTAKEHSPCVIFIDEIDAV 315


>gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 371

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IGQ DAK+   I +    +  + P ++  E  PKNIL  GP G GKT ++R LA   
Sbjct: 126 EEVIGQLDAKKKCKIVI----KYLENP-EIFGEWAPKNILFYGPPGTGKTMLARALATET 180

Query: 78  GAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             P   ++ T+     +G   + +E +     +    I+     D +
Sbjct: 181 DVPLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAI 227


>gi|148265280|ref|YP_001231986.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398780|gb|ABQ27413.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
          Length = 617

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K   + +   L++  + Q++        +PK ILLVGP G GKT ++R +A
Sbjct: 175 DDVAGMENSKLELKEMVDYLKDPKKFQKIGGK-----VPKGILLVGPPGTGKTLLARAVA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ +VG    ++ RDL   A
Sbjct: 230 GEAGVAFFSISASQFIEM-FVGVGASRV-RDLFANA 263


>gi|77359819|ref|YP_339394.1| cell division protease [Pseudoalteromonas haloplanktis TAC125]
 gi|76874730|emb|CAI85951.1| cell division protease ftsH, ATP-dependent zinc-metallo protease
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 630

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 140 DVAGCDEAKEDVSELVDFLRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAG 194

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 195 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 227


>gi|238789630|ref|ZP_04633413.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           frederiksenii ATCC 33641]
 gi|238722183|gb|EEQ13840.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           frederiksenii ATCC 33641]
          Length = 758

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 449 KNLSDRLNMLVFGQDKAIEALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|281207441|gb|EFA81624.1| ATP-dependent metalloprotease [Polysphondylium pallidum PN500]
          Length = 845

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 97/261 (37%), Gaps = 20/261 (7%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K     +   L+N  +  ++ A L     PK IL+ G  G GKT ++R +A
Sbjct: 459 EDVKGIDEVKHELEEIVDYLKNPEKYDRIGAKL-----PKGILMSGEPGTGKTLLARAIA 513

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQASIN 129
             A  PF     + F E  YVG   +++ R+L D+A      I+     D V + + S +
Sbjct: 514 GEAEIPFFYTAGSSFDEK-YVGVGAKRV-RELFDLAKSKQPCIIFIDEIDAVGKSRHSTH 571

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
             E +L  L      S   +V    +     S + +D  +           +P     G 
Sbjct: 572 FNETLLQLLSEMDGFSQNNKVM---VIGATNSPESLDPALTRPGRFDRLIAVPIPDFKGR 628

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             + + +   +   R +     + +  P     +   LI+   +    +   +   +  +
Sbjct: 629 KEIVDFYLSKVVHDRNEISSERIARATPGFTGADISNLINTAAIKA-VLHGKDQVSLKLI 687

Query: 250 DE-FDKIVARDSGNGIGVSRE 269
           DE  D I+   +     +S E
Sbjct: 688 DEARDDILMGRARKSAIISEE 708


>gi|260779176|ref|ZP_05888068.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605340|gb|EEX31635.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 757

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +EI+  LD      + GQ DA   ++ A++             D     + L  GPTG
Sbjct: 448 SDKEILQNLDEKMKMLVFGQDDAIDVLSEAIK-----LTRAGLGADNKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VGKTEVTVQLSKLMGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 562

Query: 113 I 113
            
Sbjct: 563 S 563


>gi|260436648|ref|ZP_05790618.1| cell division protease FtsH [Synechococcus sp. WH 8109]
 gi|260414522|gb|EEX07818.1| cell division protease FtsH [Synechococcus sp. WH 8109]
          Length = 616

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|237800560|ref|ZP_04589021.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023420|gb|EGI03477.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 439

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  +++ A++              +    + L  GP
Sbjct: 129 NSSDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGP 183

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   I+ +++++ E            GYVG +   ++ + +   
Sbjct: 184 TGVGKTEAARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQ 243

Query: 111 INI 113
            + 
Sbjct: 244 PHC 246


>gi|237725806|ref|ZP_04556287.1| ATP-dependent Clp protease [Bacteroides sp. D4]
 gi|229435614|gb|EEO45691.1| ATP-dependent Clp protease [Bacteroides dorei 5_1_36/D4]
          Length = 745

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|299821023|ref|ZP_07052911.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
           DSM 20601]
 gi|299816688|gb|EFI83924.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
           DSM 20601]
          Length = 821

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 24/255 (9%)

Query: 1   MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNIL 57
           MKL    + +   +   L + +IGQ+ A +AV++A+R      +  A L+D   P  + +
Sbjct: 488 MKLAETETDKLLNMEKLLHQRVIGQESAVKAVSLAVR------RARAGLKDPKRPIGSFI 541

Query: 58  LVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            +GPTGVGKT ++R LA          I+++++++ E     R V      +        
Sbjct: 542 FLGPTGVGKTELARALAESMFGDEEAMIRIDMSEYMEKFSTARLVGSPPGYV----GYEE 597

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  +
Sbjct: 598 GGQLTEKVRQKPYSVI---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRN 650

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            +       GA     + S  F         K +   V +   ++ R E    ID +T+ 
Sbjct: 651 TVIIMTSNVGAREMQQDKSVGFLVTDPRKDHKAMEQRVLQELKQVFRPEFINRID-ETIV 709

Query: 235 RDSIQMVENYGIVFL 249
             ++Q  E   IV L
Sbjct: 710 FHALQDKELKEIVTL 724



 Score = 37.6 bits (86), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 29/176 (16%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y ++ LDE +K         +   D G         V      ++  S+V  +    + 
Sbjct: 609 PYSVILLDEIEKAHPDVFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNVGAREMQQDK 668

Query: 294 DHILFIASGAFHVSRPAD----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
               F+ +      +  +            PE   R    +   +L   + + I+T    
Sbjct: 669 SVG-FLVTDPRKDHKAMEQRVLQELKQVFRPEFINRIDETIVFHALQDKELKEIVTL--- 724

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            L  Q  + +  + I +  TE +   +A    +      + GAR L+  ++R +ED
Sbjct: 725 -LTKQLTKRLAAQDIHVTLTEGAKAKIAKDGYD-----PEYGARPLKRAIQRNIED 774


>gi|255529946|ref|YP_003090318.1| ATP-dependent metalloprotease FtsH [Pedobacter heparinus DSM 2366]
 gi|255342930|gb|ACU02256.1| ATP-dependent metalloprotease FtsH [Pedobacter heparinus DSM 2366]
          Length = 696

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK+ V      L+N  +   L   +     PK  LLVG  G GKT +++ +A
Sbjct: 212 NDVAGLEEAKQEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGSPGTGKTLLAKAVA 266

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 267 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 300


>gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
 gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
          Length = 672

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGSDEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 227 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|212691639|ref|ZP_03299767.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
 gi|212665828|gb|EEB26400.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855]
          Length = 745

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GYVG     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|167629433|ref|YP_001679932.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
 gi|167592173|gb|ABZ83921.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
          Length = 814

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R +IGQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 504 KLEEELHRRVIGQDEAVAAVSRAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 557

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          ++++++++ E   V R V
Sbjct: 558 ARALAEALFGQEDAMVRIDMSEYMEKHSVSRLV 590


>gi|123441830|ref|YP_001005814.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|332162227|ref|YP_004298804.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|122088791|emb|CAL11597.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318606290|emb|CBY27788.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666457|gb|ADZ43101.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 758

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 449 KNLSDRLNMLVFGQDKAIEALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|31077102|ref|NP_852053.1| paraplegin [Rattus norvegicus]
 gi|81912692|sp|Q7TT47|SPG7_RAT RecName: Full=Paraplegin
 gi|30841810|gb|AAP35059.1| paraplegin [Rattus norvegicus]
 gi|149038417|gb|EDL92777.1| spastic paraplegia 7 homolog (human) [Rattus norvegicus]
          Length = 744

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 92/266 (34%), Gaps = 40/266 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++       
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSG 423

Query: 127 -----SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G          A++N  +V    L      D+ + I++    
Sbjct: 424 FSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQ 483

Query: 174 SDISNFDIPGGASVGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRL 227
                F+            S    ++           KK   +S ++       +    L
Sbjct: 484 ERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAKKSKILSKEEQRVVAFHESGHAL 543

Query: 228 I-----DMDTVHRDSIQMVENYGIVF 248
           +       + V + SI    N  + F
Sbjct: 544 VGWLLEHTEAVMKVSIAPRTNAALGF 569


>gi|77165886|ref|YP_344411.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
 gi|76884200|gb|ABA58881.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
          Length = 754

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S  ++ + L R I GQ  A  A+  A++              +    + L  GPTGVGKT
Sbjct: 452 SLAKLEANLKRVIFGQDKAIEALGAAIK-----MSRSGLGDTDRPVGSFLFSGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            ++R+LA + G   I+ +++++ E            GYVG +   ++ + +
Sbjct: 507 EVTRQLAHILGIELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAI 557


>gi|56552320|ref|YP_163159.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761623|ref|ZP_04759710.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|56543894|gb|AAV90048.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373931|gb|EER63464.1| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 864

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ+DA +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEDWLGKRVIGQEDAVKAVSRAVR------RARAGLQDPSRPIGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 617 KALASFLFDDDRAMVRIDMSEYMEKHAVAR 646


>gi|325285489|ref|YP_004261279.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
 gi|324320943|gb|ADY28408.1| ATP-dependent metalloprotease FtsH [Cellulophaga lytica DSM 7489]
          Length = 660

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLEGAKEEVEEIVEFLKNPEKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 251 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 284


>gi|291060125|gb|ADD72860.1| putative Cell division protease FtsH-like protein [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 675

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   +  ++   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 208 DVAGVDEAKEELMEVVDFLKFPKKYTEIGGKI-----PRGVLLVGPPGTGKTLLARAVAG 262

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF ++  + F E+ +VG    ++ RDL   A
Sbjct: 263 EASVPFFRISGSDFIEM-FVGIGASRV-RDLFKQA 295


>gi|217972308|ref|YP_002357059.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304410272|ref|ZP_07391891.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|307302017|ref|ZP_07581775.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|217497443|gb|ACK45636.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304351681|gb|EFM16080.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|306914055|gb|EFN44476.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|315268724|gb|ADT95577.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS678]
          Length = 652

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|220920394|ref|YP_002495695.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium nodulans ORS 2060]
 gi|219945000|gb|ACL55392.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Methylobacterium nodulans ORS 2060]
          Length = 817

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A+  +++         A LRD   P  + L  GPTGVGKT ++++LA
Sbjct: 470 LKRVVYGQDSAIEALTASIK------LARAGLRDPDKPIGSYLFAGPTGVGKTEVAKQLA 523

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
              G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 524 VALGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|156120691|ref|NP_001095492.1| paraplegin [Bos taurus]
 gi|154757434|gb|AAI51633.1| SPG7 protein [Bos taurus]
 gi|296477959|gb|DAA20074.1| spastic paraplegia 7 [Bos taurus]
          Length = 779

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++ S   
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAV 421


>gi|114046590|ref|YP_737140.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
 gi|113888032|gb|ABI42083.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
          Length = 657

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|311897218|dbj|BAJ29626.1| putative chaperone protein ClpB [Kitasatospora setae KM-6054]
          Length = 867

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEEELGRRLIGQHEAVRAVSDAV-----RRTRSGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVSRLV 651


>gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 611

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E        + G  + K  +      L+   +   L A +     PK +LLVGP G GKT
Sbjct: 151 EKKKVTFNDVAGADEEKEELQEIVEFLKFPKKFLDLGARI-----PKGVLLVGPPGTGKT 205

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 206 LLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 700

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           + F  S  ++     R      + G  + K+ + I + +  +  +   D+   + PK +L
Sbjct: 145 MNFGKSKAKMYDNQKRRVRFSDVAGADEEKQEL-IEIVDFLKDNKKFKDMGSRI-PKGVL 202

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           LVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 203 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 437

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF     T+F E+ +VG    +I R+L D A
Sbjct: 93  RIPAGVLLCGPPGTGKTLLARCVAGEANVPFFSCAGTEFMEM-FVGVGAARI-RNLFDQA 150


>gi|77919854|ref|YP_357669.1| serine protease ATP-binding subunit [Pelobacter carbinolicus DSM
           2380]
 gi|77545937|gb|ABA89499.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pelobacter
           carbinolicus DSM 2380]
          Length = 752

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L R + GQ  A  A+A ++       +  A L     P    L  GPTGVGKT  +R+LA
Sbjct: 462 LKRQVFGQDQAVDALARSV------LRARAGLGHPDKPTGSFLFTGPTGVGKTEAARQLA 515

Query: 75  RLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
              G  FI+ +++++ E            GYVG +   ++ D V     
Sbjct: 516 LQLGVEFIRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTDAVTKQPY 564


>gi|21282209|ref|NP_645297.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912852|ref|ZP_07130294.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81762804|sp|Q8NXY8|CLPC_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|21203645|dbj|BAB94345.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885956|gb|EFK81159.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 818

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 118/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V   +  +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|117919472|ref|YP_868664.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
 gi|117611804|gb|ABK47258.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
          Length = 657

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
          Length = 658

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + GQ++AK     +   L+   R Q++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 208 DVAGQEEAKLELEEIVDFLKEPARFQKIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 262

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            AG  F     + F E+ +VG    ++ RDL + 
Sbjct: 263 EAGVSFFHTSGSDFVEM-FVGMGAARV-RDLFEQ 294


>gi|320352510|ref|YP_004193849.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121012|gb|ADW16558.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 605

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G +++K  +   + +  +  +    L    MPK +LLVGP G GKT ++R +A  A
Sbjct: 158 EDVAGVEESKAELQEIV-DFLKAPEDYGKLGA-RMPKGVLLVGPPGTGKTLLARAVAGEA 215

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 216 GVPFFSISGSEFVEM-FVGVGAARV-RDLFEQA 246


>gi|298480320|ref|ZP_06998518.1| cell division protein FtsH [Bacteroides sp. D22]
 gi|298273601|gb|EFI15164.1| cell division protein FtsH [Bacteroides sp. D22]
          Length = 716

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 255 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 313

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 314 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 373

Query: 176 ISNFDIP 182
              F + 
Sbjct: 374 KEVFGVH 380


>gi|225018922|ref|ZP_03708114.1| hypothetical protein CLOSTMETH_02873 [Clostridium methylpentosum
           DSM 5476]
 gi|224948302|gb|EEG29511.1| hypothetical protein CLOSTMETH_02873 [Clostridium methylpentosum
           DSM 5476]
          Length = 753

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 13/118 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L R IIGQ  A   V+ A+R      +    L     P + + VGPTGVGKT + 
Sbjct: 455 ELEETLSRRIIGQDKAVEVVSAAIR------RSKVQLSKRRRPASFIFVGPTGVGKTELV 508

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           + L+        P I+++++++ E   V R V      +             ++VR +
Sbjct: 509 KVLSEALFDSVEPLIRLDMSEYMEKHAVSRLVGSPPGYV----GYDDAGQLTEKVRRK 562


>gi|222618867|gb|EEE54999.1| hypothetical protein OsJ_02631 [Oryza sativa Japonica Group]
          Length = 769

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           +L  +  P + V    + + G  DAK+ +      L+N  +  +L   L     PK ILL
Sbjct: 313 ELNKDIMPEKNVKTF-KDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKL-----PKGILL 366

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVR 115
            G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  IV 
Sbjct: 367 TGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIVF 425

Query: 116 ESRRDEV 122
               D V
Sbjct: 426 IDEIDAV 432


>gi|22297675|ref|NP_680922.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22293852|dbj|BAC07684.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 612

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLA 74
             + G   AK  +   +          AD   E+   +PK +LLVGP G GKT ++R +A
Sbjct: 157 NDVAGIDQAKLELGEVVE-----FLKYADRFTEVGAKIPKGVLLVGPPGTGKTLLARAVA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 212 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 245


>gi|298500753|ref|ZP_07010556.1| cell division protein FtsH [Vibrio cholerae MAK 757]
 gi|297540534|gb|EFH76592.1| cell division protein FtsH [Vibrio cholerae MAK 757]
          Length = 550

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 56  DVAGCDEAKEDVKELVDYLRDPSRFQKLGGKI-----PTGVLMVGPPGTGKTLLAKAIAG 110

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 111 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 143


>gi|296284569|ref|ZP_06862567.1| ATP-dependent Clp protease [Citromicrobium bathyomarinum JL354]
          Length = 859

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 29/238 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ+ A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 562 KMEEVLGKRVIGQEAAVEAVSKAVR------RARAGLKDPGRPLGSFLFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA+         +++++++F E            GYVG        E + R    V 
Sbjct: 616 TKALAQFLFDDDNAMVRIDMSEFMEKHAVARLIGAPPGYVGYEEGGVLTESVRRRPYQVV 675

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    +V        ++ R+ D        SNT  +    L    +S+   D +V
Sbjct: 676 LFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFSNTLIILTSNLGSQYLSNMTDDQQV 735

Query: 170 ADTSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           +D    + +          +  L E+  F ++        + + V +    L   + +
Sbjct: 736 SDVEPQVMDVVRGHFRPEFLNRLDEIILFHRLSMENMAPIVELQVARVQKLLADRKIE 793


>gi|73956909|ref|XP_546777.2| PREDICTED: similar to Paraplegin (Spastic paraplegia protein 7)
           [Canis familiaris]
          Length = 917

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 433 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 487

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 488 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 540


>gi|42527627|ref|NP_972725.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema
           denticola ATCC 35405]
 gi|41818455|gb|AAS12644.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema
           denticola ATCC 35405]
          Length = 785

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L + I GQ  A   V  A+    +R +     +D     N L VGPTGVGKT +++ L
Sbjct: 489 EILSKKIFGQDTAIEGVTKAV----KRSRAGFRSKD-KPVANFLFVGPTGVGKTELAKTL 543

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           A   G P ++ +++++ E            GYVG     ++   V  + N
Sbjct: 544 AEELGIPLLRFDMSEYQEKHTVSRLIGSPPGYVGFEEGGLLTSAVQKSPN 593


>gi|330012953|ref|ZP_08307535.1| ATP-dependent chaperone protein ClpB [Klebsiella sp. MS 92-3]
 gi|328533637|gb|EGF60348.1| ATP-dependent chaperone protein ClpB [Klebsiella sp. MS 92-3]
          Length = 861

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KTLANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|325474420|gb|EGC77607.1| ATP-dependent Clp protease [Treponema denticola F0402]
          Length = 785

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L + I GQ  A   V  A+    +R +     +D     N L VGPTGVGKT +++ L
Sbjct: 489 EILSKKIFGQDTAIEGVTKAV----KRSRAGFRSKD-KPVANFLFVGPTGVGKTELAKTL 543

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           A   G P ++ +++++ E            GYVG     ++   V  + N
Sbjct: 544 AEELGIPLLRFDMSEYQEKHTVSRLIGSPPGYVGFEEGGLLTSAVQKSPN 593


>gi|148679760|gb|EDL11707.1| mCG132921, isoform CRA_b [Mus musculus]
          Length = 797

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 325 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 379

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 380 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 432


>gi|298384943|ref|ZP_06994502.1| cell division protein FtsH [Bacteroides sp. 1_1_14]
 gi|298262087|gb|EFI04952.1| cell division protein FtsH [Bacteroides sp. 1_1_14]
          Length = 708

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 189 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 246

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 247 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 305

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 306 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 365

Query: 176 ISNFDIP 182
              F + 
Sbjct: 366 KEVFGVH 372


>gi|262043836|ref|ZP_06016926.1| chaperone ClpB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038806|gb|EEW39987.1| chaperone ClpB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 861

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KTLANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
 gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
          Length = 685

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +   +   ++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELVEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|238896038|ref|YP_002920774.1| protein disaggregation chaperone [Klebsiella pneumoniae NTUH-K2044]
 gi|238548356|dbj|BAH64707.1| ATP-dependent protease [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 861

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KTLANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|83589925|ref|YP_429934.1| vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572839|gb|ABC19391.1| Vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
          Length = 494

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ+ A R +  AL    R +Q+ A     L  K ILL GP G GKT ++R  A    
Sbjct: 66  DIGGQETAIRELKEALEFLLRSKQVRAMGIRPL--KGILLSGPPGTGKTLMARAAATYTD 123

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
           A F+    ++F E+ Y G   +++ R+L + A    RE  R + +++A I  +E  L+ L
Sbjct: 124 AVFLAASGSEFIEM-YAGVGAQRV-RELFNRA----RELARRQQKKRAIIFIDE--LEVL 175

Query: 139 VGKTATSNTREVFRKKLRD 157
            GK  +  +   + + L  
Sbjct: 176 GGKRGSHTSHLEYDQTLNQ 194


>gi|87301887|ref|ZP_01084721.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87283455|gb|EAQ75410.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 614

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 160 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 215 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 247


>gi|87125051|ref|ZP_01080898.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167371|gb|EAQ68631.1| cell division protein [Synechococcus sp. RS9917]
          Length = 616

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 217 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|260948508|ref|XP_002618551.1| hypothetical protein CLUG_02010 [Clavispora lusitaniae ATCC 42720]
 gi|238848423|gb|EEQ37887.1| hypothetical protein CLUG_02010 [Clavispora lusitaniae ATCC 42720]
          Length = 790

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 40/261 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G +++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 296 KDVAGCEESKEEIMEFV----KFLQDPLKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 351

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESRRDEVREQASINAEERI 134
            AG PF+ V  ++F E+ +VG    ++ RDL   A          DE+          R 
Sbjct: 352 EAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFKTAREMAPAIIFVDEIDAIGKERGNGR- 408

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
              + G     NT      ++   E SD  + +                       N ++
Sbjct: 409 ---MGGNDERENTLNQLLVEMDGFEASDHVVVL--------------------AGTNRAD 445

Query: 195 LFSKVMGSGRKKKIRMSVQ----KCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVF 248
           +  K +    +    +S+     +    + +    +L    ++ +      +  +     
Sbjct: 446 ILDKALLRPGRFDRHISIDIPDIEGRKAIFKVHLSKLTLKSVEDIKASHQDVDFSKYQKL 505

Query: 249 LDE-FDKIVARDSGNGIGVSR 268
           +DE  +K+  R +    G + 
Sbjct: 506 IDEAIEKLAGRLAALTPGFAG 526


>gi|239815632|ref|YP_002944542.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Variovorax
           paradoxus S110]
 gi|239802209|gb|ACS19276.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Variovorax
           paradoxus S110]
          Length = 773

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A   +A A++            R++    + L  GPTGVGKT  ++
Sbjct: 460 IERDLKSVVFGQDKALEVLASAVK-----MARSGLGREDKPIGSFLFSGPTGVGKTEAAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   +   L +            
Sbjct: 515 QLAYIMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTEAITKKPHAVLLL 571

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 572 DEIEKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIVMTTNAGAETMNKAT 624

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  ++   
Sbjct: 625 IGFTNPRQAGDEMTDIKRLFTPEFRNRLDAIVS--FKALDEQIILRVVDKFLLQLETQLA 682

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 683 EKKVDVTFSDGLRKHLAKKG 702


>gi|254375107|ref|ZP_04990587.1| hypothetical protein FTDG_01296 [Francisella novicida GA99-3548]
 gi|151572825|gb|EDN38479.1| hypothetical protein FTDG_01296 [Francisella novicida GA99-3548]
          Length = 859

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|113969363|ref|YP_733156.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
 gi|113884047|gb|ABI38099.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
          Length = 657

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 266


>gi|56708764|ref|YP_170660.1| ClpB protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671236|ref|YP_667793.1| ClpB protein [Francisella tularensis subsp. tularensis FSC198]
 gi|224457970|ref|ZP_03666443.1| ClpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254371373|ref|ZP_04987374.1| ClpB protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254875628|ref|ZP_05248338.1| clpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605256|emb|CAG46402.1| ClpB protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321569|emb|CAL09785.1| ClpB protein [Francisella tularensis subsp. tularensis FSC198]
 gi|151569612|gb|EDN35266.1| ClpB protein [Francisella tularensis subsp. tularensis FSC033]
 gi|254841627|gb|EET20063.1| clpB protein [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160088|gb|ADA79479.1| ClpB protein [Francisella tularensis subsp. tularensis NE061598]
          Length = 859

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|332879985|ref|ZP_08447669.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681981|gb|EGJ54894.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 655

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     P+  LLVGP G GKT +++ +A
Sbjct: 193 QDVAGLEGAKEEVQEIVDFLKNPDKYTSLGGKI-----PRGALLVGPPGTGKTLLAKAVA 247

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 248 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 281


>gi|289705692|ref|ZP_06502076.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
           luteus SK58]
 gi|289557532|gb|EFD50839.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
           luteus SK58]
          Length = 851

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R +  EL R +IGQ +A ++++ A+R      +  A L+D   P    +  GPTGVGKT 
Sbjct: 512 RNMEEELHRRVIGQDEAIKSLSRAIR------RTRAGLKDPNRPSGSFIFAGPTGVGKTE 565

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +++ LA          I +++++F E   V R
Sbjct: 566 LAKSLAEFLFGDEDALITLDMSEFQEKHTVSR 597


>gi|261333536|emb|CBH16531.1| zinc metallopeptidase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 569

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 29/193 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E+       +IG  +AK  V      L+N  +  +L A L     PK  LL G  G GKT
Sbjct: 82  EVKGTRFSDVIGIPEAKEEVRHYVEFLKNPNQFTRLGARL-----PKGCLLTGEPGTGKT 136

Query: 68  AISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
            +++ +A  A  PF     + F E+  G   + V ++  +    A  I+     D +  +
Sbjct: 137 LLAKAVAGEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARGAAPAIIFIDEIDAIGSR 196

Query: 126 ASINA------EERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEID 166
           A          E R ++ L+ +              A +N ++   K L      D++I+
Sbjct: 197 AGKRGGSVSSEENRTINQLLAELDGLNSGSDVLIVMAATNFQDNIDKALLREGRFDRKIN 256

Query: 167 IEVADTSSDISNF 179
           IE+ D ++ +  F
Sbjct: 257 IEMPDKAARVEVF 269


>gi|257057792|ref|YP_003135624.1| ATP-dependent chaperone ClpB [Saccharomonospora viridis DSM 43017]
 gi|256587664|gb|ACU98797.1| ATP-dependent chaperone ClpB [Saccharomonospora viridis DSM 43017]
          Length = 873

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ DA + V+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 573 MEEELGKRVVGQSDAVKVVSDAV-----RRARAGVADPDRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 628 ALAEFLFDDERAMLRIDMSEYSEKHSVARLV 658


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 291 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 344

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 345 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 387


>gi|152971442|ref|YP_001336551.1| protein disaggregation chaperone [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956291|gb|ABR78321.1| ATP-dependent protease, Hsp 100 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 857

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|114331000|ref|YP_747222.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91]
 gi|114308014|gb|ABI59257.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha
           C91]
          Length = 642

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  VA     LR+  R Q+L   +     P+ +L+ G  G GKT ++R +A 
Sbjct: 156 DVAGCEEAKEEVAELVEFLRDPSRFQKLGGRI-----PRGVLMCGNPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 246


>gi|24372780|ref|NP_716822.1| cell division protein FtsH [Shewanella oneidensis MR-1]
 gi|24346861|gb|AAN54267.1|AE015563_7 cell division protein FtsH [Shewanella oneidensis MR-1]
          Length = 649

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 258


>gi|56478167|ref|YP_159756.1| cell division protein [Aromatoleum aromaticum EbN1]
 gi|56314210|emb|CAI08855.1| Cell division protein [Aromatoleum aromaticum EbN1]
          Length = 630

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVSELVDFLRDPSKFQKLGGHI-----PKGVLMVGSPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 248


>gi|238791396|ref|ZP_04635035.1| Chaperone protein clpB 1 [Yersinia intermedia ATCC 29909]
 gi|238729529|gb|EEQ21044.1| Chaperone protein clpB 1 [Yersinia intermedia ATCC 29909]
          Length = 857

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|332970938|gb|EGK09912.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 632

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILL 58
           K        E        + G  + K  +      L++  +   + A +     PK +LL
Sbjct: 145 KSKAKMYNEEKKKVTFGDVAGADEEKTELVEVVDFLKDPRKFAAVGARI-----PKGVLL 199

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 200 VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 252


>gi|225430366|ref|XP_002282880.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082076|emb|CBI21081.3| unnamed protein product [Vitis vinifera]
          Length = 962

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A ++VA A+R      +  A L D + P  + + +GPTGVGKT ++
Sbjct: 643 LEQVLHQRVVGQENAVKSVADAIR------RSRAGLSDPIRPIASFMFMGPTGVGKTELA 696

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++T++ E   V R V
Sbjct: 697 KALAGYLFNTENALVRIDMTEYMEKHAVSRLV 728


>gi|156932865|ref|YP_001436781.1| protein disaggregation chaperone [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531119|gb|ABU75945.1| hypothetical protein ESA_00662 [Cronobacter sakazakii ATCC BAA-894]
          Length = 861

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|17232268|ref|NP_488816.1| cell division protein [Nostoc sp. PCC 7120]
 gi|81769738|sp|Q8YMZ8|FTSH_ANASP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|17133913|dbj|BAB76475.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 656

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 199 DDVAGIEEAKEELQEVVTF----LKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 254

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   D A  ++     D V
Sbjct: 255 EAAVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCLIFIDEIDAV 303


>gi|313681700|ref|YP_004059438.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994]
 gi|313154560|gb|ADR33238.1| ATPase AAA-2 domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 859

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL+R ++GQ+ A  AVA A++      +  A L D+  P  + L +GPTGVGKT  +
Sbjct: 566 IEDELNRDVVGQERATHAVARAIK------RNKAGLSDKSRPIGSFLFLGPTGVGKTQTA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         I+++++++ E   V R V
Sbjct: 620 KTLAKFLFDSSESMIRIDMSEYMEKHAVSRLV 651


>gi|309810915|ref|ZP_07704716.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
 gi|308435221|gb|EFP59052.1| ATP-dependent metallopeptidase HflB [Dermacoccus sp. Ellin185]
          Length = 682

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A    + +   L +  + +++ A +     PK +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVEELKEIKDFLADPEKYEKIGAKI-----PKGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 EANVPFYTISGSDFVEM-FVGVGASRV-RDLFAQA 254


>gi|282856667|ref|ZP_06265935.1| ATP-dependent metallopeptidase HflB [Pyramidobacter piscolens
           W5455]
 gi|282585516|gb|EFB90816.1| ATP-dependent metallopeptidase HflB [Pyramidobacter piscolens
           W5455]
          Length = 658

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L++  R  +L A      +PK +LL+G  G GKT ++R  A
Sbjct: 156 NDVAGCDEAKEELKEVVEFLKSPDRFTKLGAK-----VPKGVLLLGSPGTGKTLLARACA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF     + F E+ +VG    ++ RDL D A
Sbjct: 211 GEADVPFFSTSGSDFVEM-FVGVGASRV-RDLFDQA 244


>gi|115703453|ref|XP_001202193.1| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Strongylocentrotus
           purpuratus]
 gi|115752740|ref|XP_798395.2| PREDICTED: similar to Spastic paraplegia 7, paraplegin (pure and
           complicated autosomal recessive) [Strongylocentrotus
           purpuratus]
          Length = 915

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + + G ++AK  V   +     +R +   +L  ++ PK  LL+GP G GKT +++ +A  
Sbjct: 432 KDVAGLKEAKVEVMEFVDYL--KRPEKFMELGAKV-PKGALLLGPPGCGKTLLAKAVATE 488

Query: 77  AGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
           A  PF+ +  ++F E+  G     V  + ++  + A  IV     D +  + S +A 
Sbjct: 489 ANVPFLAMAGSEFVEMIGGLGAARVRSLFKEARNRAPCIVYIDELDAIGRKRSDSAN 545


>gi|332530811|ref|ZP_08406737.1| ATP-dependent metalloprotease ftsh [Hylemonella gracilis ATCC
           19624]
 gi|332039723|gb|EGI76123.1| ATP-dependent metalloprotease ftsh [Hylemonella gracilis ATCC
           19624]
          Length = 639

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     P+ +LLVGP G GKT +++ +A 
Sbjct: 162 DVAGCDEAKEEVTEVVDFLKDPQKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKGIAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 217 EAKVPFFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 265


>gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1]
          Length = 680

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K     +   L+N  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 195 DDVAGLSEEKEDLEEIVCFLKNPGRFIKVGARI-----PKGVLLVGPPGTGKTLMAKAIA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 250 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFAQAKKN 286


>gi|238760706|ref|ZP_04621827.1| Chaperone protein clpB 1 [Yersinia aldovae ATCC 35236]
 gi|238701079|gb|EEP93675.1| Chaperone protein clpB 1 [Yersinia aldovae ATCC 35236]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|206578585|ref|YP_002237070.1| ATP-dependent chaperone ClpB [Klebsiella pneumoniae 342]
 gi|288934032|ref|YP_003438091.1| ATP-dependent chaperone ClpB [Klebsiella variicola At-22]
 gi|290510908|ref|ZP_06550277.1| ATP-dependent chaperone ClpB [Klebsiella sp. 1_1_55]
 gi|206567643|gb|ACI09419.1| ATP-dependent chaperone ClpB [Klebsiella pneumoniae 342]
 gi|288888761|gb|ADC57079.1| ATP-dependent chaperone ClpB [Klebsiella variicola At-22]
 gi|289775901|gb|EFD83900.1| ATP-dependent chaperone ClpB [Klebsiella sp. 1_1_55]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|19113589|ref|NP_596797.1| mitochondrial m-AAA protease [Schizosaccharomyces pombe 972h-]
 gi|74624847|sp|Q9HGM3|RCA1_SCHPO RecName: Full=Mitochondrial respiratory chain complexes assembly
           protein rca1
 gi|9929276|emb|CAC05251.1| mitochondrial m-AAA protease [Schizosaccharomyces pombe]
          Length = 773

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   ++   +  +    L  ++ P+  +L GP G GKT +++  A  A 
Sbjct: 297 DVAGVDEAKEEIMEFVK-FLKNPKFYERLGAKI-PRGAILSGPPGTGKTLLAKATAGEAN 354

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 355 VPFLSVSGSEFLEM-FVGVGPSRV-RDLFATA 384


>gi|33865745|ref|NP_897304.1| cell division protein FtsH4 [Synechococcus sp. WH 8102]
 gi|33632915|emb|CAE07726.1| cell division protein FtsH4 [Synechococcus sp. WH 8102]
          Length = 615

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+E +      + G  DAK  +   +    ++ +    L  ++ P+ +LLVGP G GK
Sbjct: 158 LKPQEDLQVRFEDVAGINDAKEELEEVV-TFLKQPESFTGLGAKI-PRGVLLVGPPGTGK 215

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  A  PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 216 TLLARAIAGEAEVPFFSMAASEFVEL-FVGVGASRV-RDLFRQA 257


>gi|84495018|ref|ZP_00994137.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
 gi|84384511|gb|EAQ00391.1| putative cell division protein FtsH [Janibacter sp. HTCC2649]
          Length = 707

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           KL    +P+         + G  +A + +      L +  +   + A +     PK +LL
Sbjct: 159 KLATKDTPK----VTFDDVAGADEAVQELYEIKEFLSDPAKFLAVGAKI-----PKGVLL 209

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 210 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 259


>gi|311107398|ref|YP_003980251.1| chaperone protein ClpB [Achromobacter xylosoxidans A8]
 gi|310762087|gb|ADP17536.1| chaperone protein ClpB 1 [Achromobacter xylosoxidans A8]
          Length = 868

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 571 MEEYLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 624

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 625 RALAEFLFDSEEHMIRIDMSEFMEKHSVAR 654


>gi|283769680|ref|ZP_06342572.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus H19]
 gi|283459827|gb|EFC06917.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
           aureus subsp. aureus H19]
          Length = 818

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNIKIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 44.1 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNIKIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|269216425|ref|ZP_06160279.1| ATP-dependent chaperone protein ClpB [Slackia exigua ATCC 700122]
 gi|269129954|gb|EEZ61036.1| ATP-dependent chaperone protein ClpB [Slackia exigua ATCC 700122]
          Length = 891

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 93/256 (36%), Gaps = 34/256 (13%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 566 DLEDRLHERVIGQDEAVHAVAGAIR------RNRAGLSDPNRPIGSFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA          ++++++++ E            GYVG +       L +       
Sbjct: 620 AKALAEYLFDTEKAMVRIDMSEYMEKFSVQRLIGAPPGYVGYD---EGGQLTEAVRRRPY 676

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                +  E+A  +    +L  L     T         + R+    +  I +     S  
Sbjct: 677 TVVLLDEIEKAHQDVFNVLLQVLDDGRLTDG-------QGREVSFKNAIIIMTSNVGSQS 729

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           I  +            + ++    M +   R  ++   + +   +  R E    ID D +
Sbjct: 730 IREYSAREAEESMGKMVEDMMQADMSTAAQRLAELHRKISESLSQTFRPEFLNRID-DVI 788

Query: 234 HRDSIQMVENYGIVFL 249
             + +   E   IV L
Sbjct: 789 TFNGLSSQEMEPIVRL 804


>gi|253570234|ref|ZP_04847643.1| metalloprotease FtsH [Bacteroides sp. 1_1_6]
 gi|251840615|gb|EES68697.1| metalloprotease FtsH [Bacteroides sp. 1_1_6]
          Length = 714

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ V   +    +  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 195 KDVAGLAEAKQEVEEIVE-FLKEPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 252

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
             PF  +  + F E+ +VG     V  + +   + A  IV     D V R +    A   
Sbjct: 253 NVPFFSLAGSDFVEM-FVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMGG 311

Query: 131 -EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175
            +ER      +L  + G  + S        N  +V  K L      D++I +++ D +  
Sbjct: 312 NDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNER 371

Query: 176 ISNFDIP 182
              F + 
Sbjct: 372 KEVFGVH 378


>gi|226356857|ref|YP_002786597.1| cell division protease FtsH [Deinococcus deserti VCD115]
 gi|226318847|gb|ACO46843.1| putative cell division protease ftsH, precursor [Deinococcus
           deserti VCD115]
          Length = 618

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+    V   LR+  R  QL A +     P  +LLVGP G GKT +++ +A 
Sbjct: 163 DVAGCDEAKQDLQEVVDFLRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  P+  +  + F E+ +VG    ++ RDL + A   
Sbjct: 218 EARVPYFSLSGSDFVEM-FVGVGAARV-RDLFEQARKH 253


>gi|126667264|ref|ZP_01738237.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
 gi|126628209|gb|EAZ98833.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
          Length = 755

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++              E      L  GPTGVGKT +
Sbjct: 452 RTMERDLKMVVFGQDPAIESLSTAIK-----LARAGLKSPEKPEGAFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA++ G   ++ +++++ E            GYVG +   ++ + V+   + 
Sbjct: 507 TKQLAKVLGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTESVNKHPHC 561


>gi|66954652|dbj|BAD99306.1| FtsH protease [Solanum lycopersicum]
          Length = 672

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    +   L+   +   + A +     PK  LLVGP G GKT +++ +A
Sbjct: 210 DDVAGVNEAKQDFQEIVEFLKTPEKFAAVGAKI-----PKGFLLVGPPGTGKTLLAKAIA 264

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  +       +  I+     D V
Sbjct: 265 GEAGVPFFSLSGSEFIEM-FVGVGASRVRDLFNKAKQNSPCIIFIDEIDAV 314


>gi|291280297|ref|YP_003497132.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Deferribacter
           desulfuricans SSM1]
 gi|290754999|dbj|BAI81376.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Deferribacter
           desulfuricans SSM1]
          Length = 867

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ  A +AV+ A+R      +  A L D   P  + + +GPTGVGKT +
Sbjct: 565 KMEEYLHKRVIGQDKAIKAVSEAIR------RSRAGLNDPKRPIGSFIFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I+++++++ E   V +
Sbjct: 619 AKALAEFLFDSEDAMIRIDMSEYMEKHAVAK 649


>gi|296121876|ref|YP_003629654.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296014216|gb|ADG67455.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 650

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            +   + AK  +A  +   ++  + Q+L A +     PK +LL+GP G GKT ++R  A 
Sbjct: 198 DVAAMEQAKGELAEIVEFLKSPQKFQKLGAQI-----PKGVLLMGPPGTGKTLLARATAG 252

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  ++F ++ +VG     V  + R+  + +  I+     D V
Sbjct: 253 EAGVPFYSINGSEFIQM-FVGVGASRVRDLFRNAKENSPCILFIDEIDAV 301


>gi|223995685|ref|XP_002287516.1| metalloprotease [Thalassiosira pseudonana CCMP1335]
 gi|220976632|gb|EED94959.1| metalloprotease [Thalassiosira pseudonana CCMP1335]
          Length = 581

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK  +A  + +  ++ ++ +     + P+ ++L GP G GKT +++ +A  A
Sbjct: 130 EDVAGCDGAKLELAEVV-DFLKQPEVYSKNGCRI-PRGVILDGPPGTGKTLLAKAVAGEA 187

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA--- 130
           G PFI +  ++F E+ +VG     V  +       A  I+     D V R++ +  A   
Sbjct: 188 GVPFISISGSEFVEM-FVGVGASRVRDVFSQAKKNAPCIIFIDEIDAVGRQRGAGFAGGN 246

Query: 131 EER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVA 170
           +ER      IL  + G          A +N  ++  + L      D++I +++ 
Sbjct: 247 DEREQTINQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKITVDLP 300


>gi|217976933|ref|YP_002361080.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocella
           silvestris BL2]
 gi|217502309|gb|ACK49718.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocella
           silvestris BL2]
          Length = 826

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L+R + GQ  A  A+  A++              E    + L  GPTGVGKT ++R
Sbjct: 467 LTQTLERVVYGQNAAISALTSAIK-----LARAGLRDGEKPIGSYLFSGPTGVGKTEVAR 521

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ D +D   + 
Sbjct: 522 QLAVALGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHC 574


>gi|190404794|gb|EDV08061.1| heat shock protein 78 [Saccharomyces cerevisiae RM11-1a]
          Length = 811

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 498 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 552

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 553 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 605


>gi|119358345|ref|YP_912989.1| ATPase [Chlorobium phaeobacteroides DSM 266]
 gi|119355694|gb|ABL66565.1| ATPase AAA-2 domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 440

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I +EL + +IGQ++A  AV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IETELHQRVIGQEEAVTAVSEAVK------RSRAGMGDEKKPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RALAEYLFDNEDSMIRIDMSEYMESHTVSRLV 220


>gi|325954172|ref|YP_004237832.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
 gi|323436790|gb|ADX67254.1| ATP-dependent metalloprotease FtsH [Weeksella virosa DSM 16922]
          Length = 670

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G + AK  +      L+N  +  +L   +     PK  LLVGP G GKT +
Sbjct: 191 VKTTFKDVAGLEGAKEEIEEIVDFLKNPTKFTKLGGKI-----PKGALLVGPPGTGKTLL 245

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 246 AKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFANA 284


>gi|316968737|gb|EFV52972.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 788

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +       L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 292 KDVAGCEEAKLEIMEFV-NFLKNPDQYLKLGAKI-PKGAILTGPPGTGKTLLAKATAGEA 349

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             PFI V  ++F E+ +VG     V  +       A  I+     D V
Sbjct: 350 NVPFITVSGSEFLEM-FVGVGPARVRDMFSMARKRAPCILFIDEIDAV 396


>gi|254496297|ref|ZP_05109184.1| ATP binding protease component ClpA [Legionella drancourtii LLAP12]
 gi|254354485|gb|EET13133.1| ATP binding protease component ClpA [Legionella drancourtii LLAP12]
          Length = 755

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGK 66
           + R +  +L   + GQ  A  A++ A++         + LR+   P    L  GPTGVGK
Sbjct: 451 TLRNLERDLKLLVYGQDQAITALSSAIK------LGRSGLREPQKPVGCFLFAGPTGVGK 504

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           T ++R+LA + G   ++ +++++ E            GYVG +   ++ + V    +
Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPH 561


>gi|222152216|ref|YP_002561391.1| cell division protease FtsH [Streptococcus uberis 0140J]
 gi|222113027|emb|CAR40340.1| putative cell division protease FtsH [Streptococcus uberis 0140J]
          Length = 655

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 187 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 241

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 242 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 280


>gi|187950935|gb|AAI38142.1| Spastic paraplegia 7 homolog (human) [Mus musculus]
          Length = 781

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|171778210|ref|ZP_02919439.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283034|gb|EDT48458.1| hypothetical protein STRINF_00278 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 657

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|156407406|ref|XP_001641535.1| predicted protein [Nematostella vectensis]
 gi|156228674|gb|EDO49472.1| predicted protein [Nematostella vectensis]
          Length = 500

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      LRN  + ++L   L     P  +LL+G  G GKT +++ +A
Sbjct: 65  EDVQGVDEAKEELQEVVEFLRNPEKFKRLGGKL-----PTGVLLIGSPGTGKTLLAKAVA 119

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     ++F E+ +VG    ++ R+L   A
Sbjct: 120 GEAGVPFFFCSGSEFDEM-FVGVGAARV-RNLFAAA 153


>gi|169775143|ref|XP_001822039.1| respiratory chain complexes assembly protein rca1 [Aspergillus
           oryzae RIB40]
 gi|83769902|dbj|BAE60037.1| unnamed protein product [Aspergillus oryzae]
          Length = 874

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   ++  + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 391 DVAGMDEAKVEIMEFVSFLQHPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 445

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 446 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 478


>gi|330817015|ref|YP_004360720.1| ATP-dependent Zn protease [Burkholderia gladioli BSR3]
 gi|327369408|gb|AEA60764.1| ATP-dependent Zn protease [Burkholderia gladioli BSR3]
          Length = 625

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LR+  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 168 DDIAGIDEAKAELQQIVAFLRDPQRYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 223 GEADVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 256


>gi|320547726|ref|ZP_08042011.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
 gi|320447801|gb|EFW88559.1| cell division protein FtsH [Streptococcus equinus ATCC 9812]
          Length = 657

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAGRA 281


>gi|317487406|ref|ZP_07946194.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bilophila
           wadsworthia 3_1_6]
 gi|316921338|gb|EFV42636.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bilophila
           wadsworthia 3_1_6]
          Length = 757

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGKTA 68
           + +  +L   + GQ +A   V  A+       +  A L R +    + L  GPTGVGKT 
Sbjct: 450 KTLKDDLGSVLFGQDEAVDIVTRAI------LRSRAGLGRTDRPAGSFLFYGPTGVGKTE 503

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
           ++++LA   G  F++ +++++ E            GYVG +   ++ + V      V   
Sbjct: 504 LAKQLAERMGVAFLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTEAVRKTPYAV--V 561

Query: 118 RRDEVREQASINAEERILDALVGKTATSNT 147
             DE+ E+A  +    +L  +   T T NT
Sbjct: 562 LMDEI-EKAHPDIFNVLLQVMDYGTLTDNT 590



 Score = 41.5 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 33/210 (15%)

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDK-------IVARDSGNGIGVSREGVQRDLLPLVEG 281
           D   +  ++++    Y +V +DE +K       ++ +    G      G + D   +V  
Sbjct: 544 DQGGLLTEAVRKT-PYAVVLMDEIEKAHPDIFNVLLQVMDYGTLTDNTGRKADFKNVVLI 602

Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPAD----------LLPEIQGRFPVRVHLKSLNK 331
            + +     ++   + FI + A  V++ A             PE + R    V   +L  
Sbjct: 603 MTSNAGVRDMDASPMGFIEAPAGKVAQSAAQRGRKAVEAMFSPEFRNRLDALVPFNALTP 662

Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391
               +I+       I +  + +  + + L  T ++   LA    +       +GAR LQ 
Sbjct: 663 DLMGMIVDKC----IAEMGKGLADKKVNLTLTPEARSWLAKEGYDAK-----LGARPLQR 713

Query: 392 VMERVLED-----ISFSASDLQEKTVVIDA 416
           ++   LED     + F    ++  TV++D 
Sbjct: 714 LLREALEDPLAGEVLFGRL-VKGGTVIVDE 742


>gi|301764501|ref|XP_002917669.1| PREDICTED: fidgetin-like protein 1-like [Ailuropoda melanoleuca]
 gi|281343445|gb|EFB19029.1| hypothetical protein PANDA_006009 [Ailuropoda melanoleuca]
          Length = 676

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 380 NLEPKMIELIMNEIMDHGPPVSWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PK 437

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 438 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 495



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 489 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 548

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTD 340
               I   A    V R    LPE   R  + ++L S     L++ D  L++  
Sbjct: 549 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEDIALVVKQ 601


>gi|284034333|ref|YP_003384264.1| ATP-dependent metalloprotease FtsH [Kribbella flavida DSM 17836]
 gi|283813626|gb|ADB35465.1| ATP-dependent metalloprotease FtsH [Kribbella flavida DSM 17836]
          Length = 676

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL G  G GKT ++R +A 
Sbjct: 170 DVAGADEAIEELGEIKEFLQEPGKFQAVGAKI-----PKGVLLYGQPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|212709756|ref|ZP_03317884.1| hypothetical protein PROVALCAL_00804 [Providencia alcalifaciens DSM
           30120]
 gi|212687567|gb|EEB47095.1| hypothetical protein PROVALCAL_00804 [Providencia alcalifaciens DSM
           30120]
          Length = 761

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + S L   + GQ +A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 452 RTLDSRLKMLVFGQDNAIEALSEAIK-----MNRAGLGLEHKPVGSFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 507 TVQLAKALDVKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 561


>gi|187930962|ref|YP_001890946.1| chaperone ClpB [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187711871|gb|ACD30168.1| chaperone ClpB [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|254368513|ref|ZP_04984530.1| ClpB protein [Francisella tularensis subsp. holarctica FSC022]
 gi|157121407|gb|EDO65608.1| ClpB protein [Francisella tularensis subsp. holarctica FSC022]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|134301181|ref|YP_001121149.1| AAA ATPase family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134048958|gb|ABO46029.1| AAA superfamily ATPase clpB [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|219668839|ref|YP_002459274.1| ATP-dependent chaperone ClpB [Desulfitobacterium hafniense DCB-2]
 gi|219539099|gb|ACL20838.1| ATP-dependent chaperone ClpB [Desulfitobacterium hafniense DCB-2]
          Length = 864

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + + + +IGQ++A +AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEARIHQRVIGQEEAVKAVADAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 619 KALAEFLFDDDQGIVRIDMSEYMEKHTVSR 648


>gi|148539988|ref|NP_694816.3| paraplegin [Mus musculus]
 gi|123784784|sp|Q3ULF4|SPG7_MOUSE RecName: Full=Paraplegin
 gi|74211524|dbj|BAE26494.1| unnamed protein product [Mus musculus]
          Length = 781

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|332184862|gb|AEE27116.1| ClpB protein [Francisella cf. novicida 3523]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus
           epidermidis FRI909]
          Length = 700

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|240115233|ref|ZP_04729295.1| hypothetical protein NgonPID1_03108 [Neisseria gonorrhoeae PID18]
 gi|260440949|ref|ZP_05794765.1| hypothetical protein NgonDG_07686 [Neisseria gonorrhoeae DGI2]
 gi|268600913|ref|ZP_06135080.1| cell division protein FtsH [Neisseria gonorrhoeae PID18]
 gi|291044277|ref|ZP_06569986.1| cell division protein ftsH [Neisseria gonorrhoeae DGI2]
 gi|268585044|gb|EEZ49720.1| cell division protein FtsH [Neisseria gonorrhoeae PID18]
 gi|291011171|gb|EFE03167.1| cell division protein ftsH [Neisseria gonorrhoeae DGI2]
          Length = 655

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
 gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
          Length = 761

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           LD+ I GQ  A   V  A+          A L D+  P  ++L VGPTGVGKT ++R+LA
Sbjct: 473 LDK-IYGQDKAVDKVVEAV------MMAKAGLTDDDKPLASLLFVGPTGVGKTEVARQLA 525

Query: 75  RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +  G   ++ +++++TE            GYVG     ++ D +    N 
Sbjct: 526 KELGIELVRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNC 575


>gi|225630912|ref|YP_002727703.1| cell division protein FtsH [Wolbachia sp. wRi]
 gi|225592893|gb|ACN95912.1| cell division protein FtsH [Wolbachia sp. wRi]
          Length = 612

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--ILGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|209549171|ref|YP_002281088.1| ATP-dependent Clp protease ATP-binding subunit clpA [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534927|gb|ACI54862.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 830

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 468 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 521

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 522 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 575


>gi|160934135|ref|ZP_02081522.1| hypothetical protein CLOLEP_02998 [Clostridium leptum DSM 753]
 gi|156866808|gb|EDO60180.1| hypothetical protein CLOLEP_02998 [Clostridium leptum DSM 753]
          Length = 759

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   IIGQ +A +AV+ A+R    R Q+    R    P + + VGPTGVGKT + +
Sbjct: 462 IEDKLKSRIIGQDEAVKAVSAAIR--RSRVQISPRRR----PASFIFVGPTGVGKTELVK 515

Query: 72  RLARLA-GAP--FIKVEVTKFTEIGYVGR 97
            L++     P   I++++++F E   V R
Sbjct: 516 VLSQELFDTPETLIRLDMSEFMEKHSVSR 544



 Score = 41.1 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L PE   R    +  + L ++DF  I       ++ +Y + +K +G+   F + +   LA
Sbjct: 650 LRPEFLSRIDEVIVFRPLEENDFVSIARL----MLSEYVDSLKEKGVQFTFQDSACQWLA 705

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLED 399
             A+   S     GAR L+ ++ R +ED
Sbjct: 706 HHAIGGKS-----GARDLRNLVRREVED 728


>gi|29835183|gb|AAH51051.1| Spg7 protein [Mus musculus]
          Length = 765

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 293 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 347

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 348 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 400


>gi|75908658|ref|YP_322954.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75702383|gb|ABA22059.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 633

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +       + P         +PK +LLVGP G GKT +++ +A 
Sbjct: 175 DDVAGIEEAKEELQEVVT----FLKQPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   D A  ++     D V
Sbjct: 231 EAAVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKDNAPCLIFIDEIDAV 279


>gi|6320464|ref|NP_010544.1| Hsp78p [Saccharomyces cerevisiae S288c]
 gi|31077173|sp|P33416|HSP78_YEAST RecName: Full=Heat shock protein 78, mitochondrial; Flags:
           Precursor
 gi|1136213|emb|CAA92715.1| Hsp78p [Saccharomyces cerevisiae]
 gi|1226034|emb|CAA94097.1| Hsp78p [Saccharomyces cerevisiae]
 gi|207346524|gb|EDZ72997.1| YDR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270714|gb|EEU05876.1| Hsp78p [Saccharomyces cerevisiae JAY291]
 gi|259145495|emb|CAY78759.1| Hsp78p [Saccharomyces cerevisiae EC1118]
 gi|285811274|tpg|DAA12098.1| TPA: Hsp78p [Saccharomyces cerevisiae S288c]
 gi|323334122|gb|EGA75506.1| Hsp78p [Saccharomyces cerevisiae AWRI796]
 gi|323349273|gb|EGA83502.1| Hsp78p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355592|gb|EGA87412.1| Hsp78p [Saccharomyces cerevisiae VL3]
          Length = 811

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 498 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 552

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 553 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 605


>gi|330860568|emb|CBX70867.1| hypothetical protein YEW_DI14010 [Yersinia enterocolitica W22703]
          Length = 378

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 69  KNLSDRLNMLVFGQDKAIEALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 123

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 124 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 177


>gi|323305491|gb|EGA59234.1| Hsp78p [Saccharomyces cerevisiae FostersB]
          Length = 811

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 498 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 552

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 553 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 605


>gi|312865755|ref|ZP_07725977.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
 gi|311098630|gb|EFQ56852.1| ATP-dependent metallopeptidase HflB [Streptococcus downei F0415]
          Length = 666

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 191 DVAGAEEEKQELVEVVDFLKNPKKYRALGARI-----PTGVLLEGPPGTGKTLLAKAVAG 245

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 246 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 284


>gi|296275770|ref|ZP_06858277.1| ClpA-related protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 567

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 251 LEDTLHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 304

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 305 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 364

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 365 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 424

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 425 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 481

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 482 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 539

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 540 KVTVDHDGKEF 550



 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 448 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 503

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 504 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 546


>gi|193786555|dbj|BAG51338.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 611

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 161 NDVAGADEEKEELQEIVEFLKYPKKFLELGARI-----PKGVLLVGPPGTGKTLLAKAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 216 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFDQAKKN 252


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K   + V   L+   +   L A +     P  +LLVGP G GKT ++R  A 
Sbjct: 190 DVAGADEEKAELQEVVEFLKAPGKFNSLGARI-----PHGVLLVGPPGTGKTLLARACAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            AG PF  +  + F E+ YVG    ++ RDL + A   +
Sbjct: 245 EAGVPFYAISGSDFVEM-YVGVGASRV-RDLFEKAKKTM 281


>gi|225462747|ref|XP_002268307.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1200

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   L+N  +  +L   L     PK 
Sbjct: 722 YAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKL-----PKG 776

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 777 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 835

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 836 IIFIDEIDAV 845


>gi|151942234|gb|EDN60590.1| heat shock protein 78 [Saccharomyces cerevisiae YJM789]
          Length = 811

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 498 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 552

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 553 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 605


>gi|148242588|ref|YP_001227745.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147850898|emb|CAK28392.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 647

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 31/248 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L+   R   L A +     P+ +LLVGP G GKT ++R +A
Sbjct: 188 DDVAGIDEAKTELQEVVTFLKEPERFTALGARI-----PRGVLLVGPPGTGKTLLARAIA 242

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             A  PF  +  ++F E+ +VG     V  + R     A  I+     D V R++     
Sbjct: 243 GEAEVPFFTLSASEFVEM-FVGVGASRVRDLFRQAKAKAPCIIFIDEIDAVGRQRGAGIG 301

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D++I +E+ D  
Sbjct: 302 GGNDEREQTLNQLLTEMDGFEENSGIIMLAATNRADVLDTALLRPGRFDRQIMVELPDRR 361

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
              +   +   +      +S         G       ++      L        +D +  
Sbjct: 362 GREAILGVHARSRPLSDEVSMELWARRTPGFSGADLANLINEAAILTARRERTFVD-EQA 420

Query: 234 HRDSIQMV 241
             D+++ V
Sbjct: 421 MHDALERV 428


>gi|118498299|ref|YP_899349.1| chaperone clpB [Francisella tularensis subsp. novicida U112]
 gi|194323883|ref|ZP_03057658.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118424205|gb|ABK90595.1| chaperone clpB [Francisella novicida U112]
 gi|194321780|gb|EDX19263.1| ATPase, AAA family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|114563425|ref|YP_750938.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           frigidimarina NCIMB 400]
 gi|114334718|gb|ABI72100.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           frigidimarina NCIMB 400]
          Length = 752

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        ++    + +  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSAAI-----RLSRSGLGSEKKPVGSFMFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA       I+ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLANCLNLKLIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|238795831|ref|ZP_04639344.1| hypothetical protein ymoll0001_25030 [Yersinia mollaretii ATCC
           43969]
 gi|238720294|gb|EEQ12097.1| hypothetical protein ymoll0001_25030 [Yersinia mollaretii ATCC
           43969]
          Length = 734

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             D     + L  GPTGVGKT +
Sbjct: 425 KNLSDRLNMLVFGQDKAIDALSEAIK-----MSRAGLGHDHKPVGSFLFAGPTGVGKTEV 479

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 480 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 533


>gi|296131339|ref|YP_003638589.1| ATPase AAA-2 domain protein [Cellulomonas flavigena DSM 20109]
 gi|296023154|gb|ADG76390.1| ATPase AAA-2 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 566

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 16/103 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ  A      A+    R       LR +     +LL G TG GKT ++
Sbjct: 264 DLTERLRTVVVGQDAA----VTAVSRHVRLGLAGLRLRADRPSTAVLLTGSTGTGKTLLA 319

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVG-RNVEQ 101
             LA+    P ++V++  +TE            GYVG R+ E 
Sbjct: 320 TTLAQTLHVPLLRVDLAAYTEPHQIATLLGSPPGYVGSRDQEN 362


>gi|167627089|ref|YP_001677589.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597090|gb|ABZ87088.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|311748094|ref|ZP_07721879.1| putative cell division protein FtsH [Algoriphagus sp. PR1]
 gi|126574738|gb|EAZ79119.1| putative cell division protein FtsH [Algoriphagus sp. PR1]
          Length = 689

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  +      L+N  +  +L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 201 VAGLDEAKEEIQEIVEFLKNPSKFTKLGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 255

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 256 AAVPFFTLSGSDFVEM-FVGVGAARV-RDLFKQA 287


>gi|116251969|ref|YP_767807.1| ATP-dependent Clp protease ATP-binding subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256617|emb|CAK07705.1| putative ATP-dependent Clp protease ATP-binding subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 830

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 468 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 521

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 522 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 575


>gi|82701617|ref|YP_411183.1| ATP-dependent metalloprotease FtsH [Nitrosospira multiformis ATCC
           25196]
 gi|82409682|gb|ABB73791.1| membrane protease FtsH catalytic subunit [Nitrosospira multiformis
           ATCC 25196]
          Length = 631

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  V+     LR+  + Q+L   +     P+ +L+VG  G GKT ++R +A 
Sbjct: 156 DVAGCEEAKEEVSELVEFLRDPSKFQKLGGRI-----PRGVLMVGNPGTGKTLLARAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKH 246


>gi|89255534|ref|YP_512895.1| ClpB protein [Francisella tularensis subsp. holarctica LVS]
 gi|115314050|ref|YP_762773.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|156501472|ref|YP_001427537.1| AAA family ATPase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010310|ref|ZP_02275241.1| ATPase [Francisella tularensis subsp. holarctica FSC200]
 gi|254366960|ref|ZP_04982997.1| clpB protein [Francisella tularensis subsp. holarctica 257]
 gi|290954297|ref|ZP_06558918.1| AAA family ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312276|ref|ZP_06803070.1| AAA family ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|89143365|emb|CAJ78535.1| ClpB protein [Francisella tularensis subsp. holarctica LVS]
 gi|115128949|gb|ABI82136.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18]
 gi|134252787|gb|EBA51881.1| clpB protein [Francisella tularensis subsp. holarctica 257]
 gi|156252075|gb|ABU60581.1| ATPase, AAA family [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|238798951|ref|ZP_04642414.1| Chaperone protein clpB 1 [Yersinia mollaretii ATCC 43969]
 gi|238717180|gb|EEQ09033.1| Chaperone protein clpB 1 [Yersinia mollaretii ATCC 43969]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|238785830|ref|ZP_04629799.1| Chaperone protein clpB 1 [Yersinia bercovieri ATCC 43970]
 gi|238713243|gb|EEQ05286.1| Chaperone protein clpB 1 [Yersinia bercovieri ATCC 43970]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU121]
          Length = 685

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +   +   ++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELVEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|317406406|gb|EFV86623.1| chaperone ClpB [Achromobacter xylosoxidans C54]
          Length = 868

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 571 MEEYLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 624

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 625 RALAEFLFDSEEHMIRIDMSEFMEKHSVAR 654


>gi|306834615|ref|ZP_07467727.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
 gi|304423251|gb|EFM26405.1| cell division protein FtsH [Streptococcus bovis ATCC 700338]
          Length = 660

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|255067547|ref|ZP_05319402.1| chaperone protein ClpB [Neisseria sicca ATCC 29256]
 gi|255048168|gb|EET43632.1| chaperone protein ClpB [Neisseria sicca ATCC 29256]
          Length = 313

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 19  KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 72

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 73  CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 103


>gi|241667651|ref|ZP_04755229.1| chaperone ClpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876196|ref|ZP_05248906.1| chaperone clpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842217|gb|EET20631.1| chaperone clpB [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|238496235|ref|XP_002379353.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus flavus NRRL3357]
 gi|220694233|gb|EED50577.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Aspergillus flavus NRRL3357]
          Length = 874

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   ++  + Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 391 DVAGMDEAKVEIMEFVSFLQHPEKFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 445

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 446 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 478


>gi|124023532|ref|YP_001017839.1| ATP-dependent Clp protease Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963818|gb|ABM78574.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9303]
          Length = 863

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ+ A +AVA A+      Q+  A L D   P  + L +GPTGVGKT +S
Sbjct: 568 LEAELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELS 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA       A  ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 622 KALASQLFDSEAALVRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAVRRR 675


>gi|319942667|ref|ZP_08016974.1| ATP-dependent metalloprotease FtsH [Sutterella wadsworthensis
           3_1_45B]
 gi|319803750|gb|EFW00685.1| ATP-dependent metalloprotease FtsH [Sutterella wadsworthensis
           3_1_45B]
          Length = 671

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   LR+  + Q+L   +     P+ +LLVG  G GKT +++ +A
Sbjct: 157 KDVAGCDEAKEDVQEIVDFLRDPSKYQRLGGRI-----PRGVLLVGSPGTGKTLLAKAIA 211

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 GEAGVPFFTISGSDFVEM-FVGVGAARVRDMFETAKKNAPCIIFIDEIDAV 261


>gi|317407704|gb|EFV87636.1| ATP-dependent Clp protease ATP-binding [Achromobacter xylosoxidans
           C54]
          Length = 775

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 20/115 (17%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ +A  A++ A++            + E      L  GPTGVGKT +
Sbjct: 460 ATLDRDLKTVVFGQDNAIEALSAAIK-----MARSGLGKPEKPIGAFLFSGPTGVGKTEV 514

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 515 ARQLAFTLGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHC 569


>gi|312961673|ref|ZP_07776171.1| ATP-dependent clp protease [Pseudomonas fluorescens WH6]
 gi|311283932|gb|EFQ62515.1| ATP-dependent clp protease [Pseudomonas fluorescens WH6]
          Length = 756

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  A++ A++              +    + L  GP
Sbjct: 446 NSSDKELLRNLERDLKLTVFGQDAAIDALSTAIK-----LSRAGLKSPDKPVGSFLFAGP 500

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +   
Sbjct: 501 TGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQ 560

Query: 111 INI 113
            + 
Sbjct: 561 PHC 563


>gi|256828068|ref|YP_003156796.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM
           4028]
 gi|256577244|gb|ACU88380.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM
           4028]
          Length = 637

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L N  +  +L   +     PK +LLVG  G GKT ++R +A 
Sbjct: 154 DVAGVDEAKEELQEIVDFLSNPKKFTRLGGRI-----PKGVLLVGGPGTGKTLLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 209 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFIQGKKNAPCLIFIDEIDAV 257


>gi|92114558|ref|YP_574486.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Chromohalobacter salexigens DSM 3043]
 gi|91797648|gb|ABE59787.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Chromohalobacter salexigens DSM 3043]
          Length = 753

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S R+++S L+R     + GQ +A  ++A A++              +    + L  GPTG
Sbjct: 447 SDRKLLSNLERDLKMLVFGQDEAITSLAAAIK-----LSRAGLKSPDKPVGSFLFSGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++R+L++L G   ++ +++++ E            GYVG +   ++ + ++   +
Sbjct: 502 VGKTEVARQLSQLMGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAINKQPH 561

Query: 113 I 113
            
Sbjct: 562 C 562


>gi|42521050|ref|NP_966965.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410791|gb|AAS14899.1| cell division protein FtsH [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 613

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--ILGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|332679035|gb|AEE88164.1| ClpB protein [Francisella cf. novicida Fx1]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|288904238|ref|YP_003429459.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|306832498|ref|ZP_07465650.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977215|ref|YP_004286931.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730963|emb|CBI12507.1| cell-division protein FtsH [Streptococcus gallolyticus UCN34]
 gi|304425398|gb|EFM28518.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177143|emb|CBZ47187.1| cell division protein FtsH [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 660

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|258422629|ref|ZP_05685535.1| endopeptidase [Staphylococcus aureus A9635]
 gi|257847201|gb|EEV71209.1| endopeptidase [Staphylococcus aureus A9635]
          Length = 818

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 35/311 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDALHERVIGQKDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+V++++F E   V R V      +       + E  R +      
Sbjct: 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVIL 615

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
               E+A  +    +L  L     T T      FR  +     +    +++    +    
Sbjct: 616 FDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGG 675

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           + D     ++    L EL +        +   + V   + +L ++E   ++ M      +
Sbjct: 676 SSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIV---FHKLTKEELKEIVTMMVNKLTN 732

Query: 238 IQMVENYGIVFLDEF-DKIVARDSGNGIGVSREGVQRDLLPLVE---------GSSVSTK 287
               +N  I+  D+  DKI   + G         + R +   +E         G+ +  K
Sbjct: 733 RLSEQNINIIVTDKAKDKIA--EEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGK 790

Query: 288 YGSINTDHILF 298
             +++ D   F
Sbjct: 791 KVTVDHDGKEF 801



 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + D +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNR----LSEQNINIIVTDKAKDKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797


>gi|255527632|ref|ZP_05394493.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           carboxidivorans P7]
 gi|296185310|ref|ZP_06853720.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           carboxidivorans P7]
 gi|255508674|gb|EET85053.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium
           carboxidivorans P7]
 gi|296050144|gb|EFG89568.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium
           carboxidivorans P7]
          Length = 739

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   + + I GQ+ A  ++  A++     +       +     N+L VGPTGVGKT I
Sbjct: 445 KNLDETIKKEIFGQEKAIESIVTAIK-----KSRAGFNDENKTVANLLFVGPTGVGKTEI 499

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            +++++    P I+ +++++ E   V R
Sbjct: 500 CKQVSKALNIPLIRFDMSEYQEKHTVAR 527


>gi|208780138|ref|ZP_03247481.1| ATPase family associated with various cellular activities (AAA)
           protein [Francisella novicida FTG]
 gi|208744142|gb|EDZ90443.1| ATPase family associated with various cellular activities (AAA)
           protein [Francisella novicida FTG]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 295 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 348

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 349 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 391


>gi|254371967|ref|ZP_04987460.1| ClpB protein [Francisella tularensis subsp. novicida GA99-3549]
 gi|151569698|gb|EDN35352.1| ClpB protein [Francisella novicida GA99-3549]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ  A +AV+ A+R      +  + L D   P  + + +GPTGVGKT ++
Sbjct: 564 MESFLHKRVIGQDQAIKAVSNAVR------RSRSGLSDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 618 KALAEFLFDDEDAMLRVDMSEFMEKHSVAR 647


>gi|15674261|ref|NP_268434.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71909827|ref|YP_281377.1| cell division protein [Streptococcus pyogenes MGAS5005]
 gi|13621337|gb|AAK33156.1| putative cell division protein [Streptococcus pyogenes M1 GAS]
 gi|71852609|gb|AAZ50632.1| cell division protein [Streptococcus pyogenes MGAS5005]
          Length = 659

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|103485900|ref|YP_615461.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
 gi|98975977|gb|ABF52128.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256]
          Length = 862

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R +IGQQ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 562 KMEEFLGRRVIGQQQAVQAVSKAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          +++++++F E   V R
Sbjct: 616 TKALAEFMFGDERAMVRIDMSEFMEKHAVAR 646


>gi|325284113|ref|YP_004256654.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324315922|gb|ADY27037.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 625

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + V   LR   + + L A +     P  +LLVGP G GKT +++ +A 
Sbjct: 160 DVAGCEEAKADLQEVVDFLRQPEKYRALGARI-----PHGLLLVGPPGSGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            AG P+  V  + F E+ +VG     V  +       A  I+     D V  +
Sbjct: 215 EAGVPYFAVSGSDFVEM-FVGVGAARVRDLFEQARKAAPCIIFMDEIDAVGRK 266


>gi|229591240|ref|YP_002873359.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens SBW25]
 gi|229363106|emb|CAY50113.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens SBW25]
          Length = 756

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 20/123 (16%)

Query: 6   NFSPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           N S +E++  L+R     + GQ  A  A++ A++              +    + L  GP
Sbjct: 446 NSSDKELLRNLERDLKLTVFGQDAAIDALSTAIK-----LSRAGLKSPDKPVGSFLFAGP 500

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVA 110
           TGVGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +   
Sbjct: 501 TGVGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQ 560

Query: 111 INI 113
            + 
Sbjct: 561 PHC 563


>gi|42524085|ref|NP_969465.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus
           HD100]
 gi|81616746|sp|Q6MJV1|FTSH2_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|39576293|emb|CAE80458.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus
           HD100]
          Length = 615

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   ++   +  Q    L    MPK ILLVGP G GKT +++ +A  A 
Sbjct: 156 DVAGVEEAKAELYEVVQ-FLKSPQEFGRLGA-RMPKGILLVGPPGTGKTLLAKAVAGEAQ 213

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 214 VPFYSITGSEFVEM-FVGVGAARV-RDLFEQA 243


>gi|289804671|ref|ZP_06535300.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 50

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348
            L+PE  GR PV   L  L++     IL + ++ L  Q
Sbjct: 13  GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQ 50


>gi|317405974|gb|EFV86252.1| cell division protein FtsH [Achromobacter xylosoxidans C54]
          Length = 632

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 159 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 214 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 249


>gi|190891597|ref|YP_001978139.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli
           CIAT 652]
 gi|190696876|gb|ACE90961.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
           etli CIAT 652]
          Length = 829

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 467 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 520

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 521 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|167470923|ref|ZP_02335627.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           FV-1]
          Length = 734

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L+  + GQ  A  A++ A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 425 RNLSDRLNMLVFGQDKAIEALSEAIK------MSRAGLGHERQPVGSFLFAGPTGVGKTE 478

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 479 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDSVIKHPH 533


>gi|241204497|ref|YP_002975593.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858387|gb|ACS56054.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 830

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 468 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 521

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 522 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 575


>gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A]
 gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis
           RP62A]
 gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU144]
 gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU028]
 gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU045]
          Length = 700

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|85706748|ref|ZP_01037840.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. 217]
 gi|85668806|gb|EAQ23675.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. 217]
          Length = 872

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R +IGQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEDNLHRRVIGQNTAVKAVANAVR------RARAGLNDEGRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + +A       +  +++++++F E            GYVG +      E + R    V +
Sbjct: 615 KAVAEFLFDDDSAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQVVL 674

Query: 112 NIVRESRRDEV 122
               E    EV
Sbjct: 675 FDEVEKAHPEV 685


>gi|332289023|ref|YP_004419875.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
 gi|330431919|gb|AEC16978.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMIRIDMSEFMEKHSVSRLV 647


>gi|238765381|ref|ZP_04626305.1| Chaperone protein clpB 1 [Yersinia kristensenii ATCC 33638]
 gi|238696423|gb|EEP89216.1| Chaperone protein clpB 1 [Yersinia kristensenii ATCC 33638]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAMFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|226951532|ref|ZP_03821996.1| ATP-dependent metalloprotease FtsH [Acinetobacter sp. ATCC 27244]
 gi|294651174|ref|ZP_06728506.1| M41 family endopeptidase FtsH [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837724|gb|EEH70107.1| ATP-dependent metalloprotease FtsH [Acinetobacter sp. ATCC 27244]
 gi|292822927|gb|EFF81798.1| M41 family endopeptidase FtsH [Acinetobacter haemolyticus ATCC
           19194]
          Length = 631

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPSKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 245


>gi|196011868|ref|XP_002115797.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens]
 gi|190581573|gb|EDV21649.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens]
          Length = 773

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G ++AK  +   + N  +       L  ++ P+  +L GP G GKT +++  A  AG 
Sbjct: 299 VAGCEEAKIEIMEFV-NFLKNPNQYQQLGAKI-PRGAILSGPPGTGKTLLAKATAGEAGV 356

Query: 80  PFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           PF+ +  ++F E+ +VG     V  +       A  I+     D V
Sbjct: 357 PFLSISGSEFLEM-FVGVGPARVRDLYAQARKNAPCIIFIDEIDAV 401


>gi|145529357|ref|XP_001450467.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418078|emb|CAK83070.1| unnamed protein product [Paramecium tetraurelia]
          Length = 416

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 93/260 (35%), Gaps = 36/260 (13%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARLA 77
           I G + AK+ +   +       Q P   R+    + + +++ GP G GKT +++  A  +
Sbjct: 163 IYGLEHAKKQLQQIIE----YLQDPQKFRNVGARLRRGVMIYGPPGTGKTMLAKATATES 218

Query: 78  GAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQA-------- 126
              F+    T+F E+ YVG   + V ++ +   ++A  I+     D +  +         
Sbjct: 219 NVQFLYCSATEFMEV-YVGTGPKRVRELFKKARELAPAIIFIDEIDSIAYKRKNQNFGSE 277

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEV--A 170
                  ++   ++L  L G             N  ++  + L      D +I+IE+   
Sbjct: 278 TGGDNERVSTLNQLLTELDGFKENENIVVIAATNRIQILDEALLRSGRFDIKIEIEMPSE 337

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                I    +          + EL +K         +     +     +  + + +ID 
Sbjct: 338 HDRKGILGVHLQNKKHQISSGMVELVAKNANGFSGADMENITNESAYIAIEKQQEFIIDA 397

Query: 231 DTVHRDSIQMVENYGIVFLD 250
           D   +++ + V      F D
Sbjct: 398 DF--QEAFKKVTQEKQNFKD 415


>gi|89894414|ref|YP_517901.1| hypothetical protein DSY1668 [Desulfitobacterium hafniense Y51]
 gi|89333862|dbj|BAE83457.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 864

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + + + +IGQ++A +AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEARIHQRVIGQEEAVKAVADAVR------RSRAGLQDPNRPLGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 619 KALAEFLFDDDQGIVRIDMSEYMEKHTVSR 648


>gi|282882499|ref|ZP_06291120.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B]
 gi|300814614|ref|ZP_07094865.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|281297641|gb|EFA90116.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B]
 gi|300511233|gb|EFK38482.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 645

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  +      L+N  R  ++ A +     PK +LLVGP G GKT +SR +A
Sbjct: 163 KDVAGLVEEKEELGEIVDFLKNPKRFTEMGARI-----PKGVLLVGPPGTGKTYLSRAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 218 GEAGVPFFIMSGSDFVEM-FVGVGASRV-RDLFEAAKKN 254


>gi|261749484|ref|YP_003257170.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497577|gb|ACX84027.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 653

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L++  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 196 KDVAGLEGAKEEVQEIVEFLKSPQKYTKLGGKI-----PKGALLIGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 251 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFEKA 284


>gi|325982671|ref|YP_004295073.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
 gi|325532190|gb|ADZ26911.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212]
          Length = 638

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  VA     LR+  + Q+L   +     P+ +L+VG  G GKT ++R +A
Sbjct: 155 NDVAGCEEAKEEVAELVEFLRDPTKFQKLGGRI-----PRGVLMVGSPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 GEAQVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 246


>gi|242058043|ref|XP_002458167.1| hypothetical protein SORBIDRAFT_03g028120 [Sorghum bicolor]
 gi|241930142|gb|EES03287.1| hypothetical protein SORBIDRAFT_03g028120 [Sorghum bicolor]
          Length = 779

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           ++  +  P + V    + + G  DAK+ +      L+N  +  +L   L     PK ILL
Sbjct: 323 EMNKDIMPEKNVKTF-KDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKL-----PKGILL 376

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G  G GKT +++ +A  AG PF     ++F E+ +VG    ++ R L   A
Sbjct: 377 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRV-RSLFQAA 426


>gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H]
 gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H]
          Length = 862

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 116/301 (38%), Gaps = 39/301 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  ++K  +      +RNR + Q++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 153 EEIAGIDESKLELLEVVDFIRNREKYQEMGARM-----PKGVLLVGPPGSGKTMLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S    
Sbjct: 208 TEANVPYIYTSGPEFIEI-YVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRS---- 262

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                  V         +   + L + +     + I V   ++ I   D       G  +
Sbjct: 263 ----SGSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDS-ALLRPGRFD 317

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL---------IDMDTVHRDSIQMV- 241
                     +GRK+ + + ++K   +L  ++ D++          D++ V  ++  +  
Sbjct: 318 RIVYVPLPDVNGRKRILEIYIKKIKSDLKAEDIDKIARLTPGFSGADLENVVNEATILAT 377

Query: 242 -ENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDH 295
                +V + E     DK+        +  S    QR +    E G ++   +    TD 
Sbjct: 378 RNKKSVVSIGELFEARDKVSMGPERKSLRQSDH--QRRITAYHEAGHAIVAYFLQPKTDP 435

Query: 296 I 296
           I
Sbjct: 436 I 436


>gi|169631343|ref|YP_001704992.1| chaperone ClpB [Mycobacterium abscessus ATCC 19977]
 gi|169243310|emb|CAM64338.1| Chaperone ClpB [Mycobacterium abscessus]
          Length = 848

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 564 MEDELGKRVVGQKKAVEAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 619 ALADFLFDDEHAMVRIDMSEYGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRR 671


>gi|162448221|ref|YP_001621353.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii
           PG-8A]
 gi|310943111|sp|A9NE17|FTSH_ACHLI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|161986328|gb|ABX81977.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii
           PG-8A]
          Length = 641

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G  + K  +A     L+N  +   + A      +PK +LLVG  G GKT +++ +A 
Sbjct: 183 DIAGADEEKAEMAELIDFLKNPKKYADMGA-----RVPKGVLLVGQPGTGKTLLAKAVAG 237

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            A  PF  +  + F E+ YVG    ++ RDL       A  I+     D V
Sbjct: 238 EAQVPFFSISGSDFVEL-YVGVGASRV-RDLFKVAKQSAPCIIFIDEIDAV 286


>gi|114613357|ref|XP_001153794.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 563

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 267 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 324

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 325 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 382

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 383 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 436

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 437 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 490

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 491 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 550

Query: 278 LVEG 281
           L E 
Sbjct: 551 LYEN 554



 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 376 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 435

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 436 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 491


>gi|71902680|ref|YP_279483.1| cell division protein [Streptococcus pyogenes MGAS6180]
 gi|71801775|gb|AAX71128.1| cell division protein [Streptococcus pyogenes MGAS6180]
          Length = 659

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
 gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484]
          Length = 684

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 256


>gi|299117317|emb|CBN75277.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 418

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 12  IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I S     I G  +AK   + +   L    R   + A L     P+ +LL GP+G GKT 
Sbjct: 186 IRSVSFADIAGADEAKVELKELVDFLTFPARYADIGARL-----PRGVLLSGPSGTGKTL 240

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
           ++R +A  A  PF     + F E+  VGR   ++ RDL  
Sbjct: 241 LARAMAAEARVPFFSCSASDFVEM-LVGRGAARV-RDLFQ 278


>gi|239907761|ref|YP_002954502.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
 gi|239797627|dbj|BAH76616.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
          Length = 612

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L+   R Q+L   +     PK +LLVGP G GKT ++R +A 
Sbjct: 162 DVAGCDEAKTELEEIVDYLKTPERFQRLGGQM-----PKGVLLVGPPGTGKTLLARAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
            A  PF  +  ++F E+ +VG    ++    V  
Sbjct: 217 EAQVPFFSISGSEFVEM-FVGVGAARVRELFVQA 249


>gi|306430717|emb|CBJ17105.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYVVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|298245463|ref|ZP_06969269.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297552944|gb|EFH86809.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 746

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L +++IGQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT 
Sbjct: 429 RNLEQDLRKHVIGQDEAISAVARAIR------RSRAGLKDPKRPIGSFLFLGPTGVGKTE 482

Query: 69  ISRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           +++ LA          I+ +++++ E            GYVG +
Sbjct: 483 LAKALAAELFGGADHIIRFDMSEYMEPHTVSRLFGSPPGYVGHD 526


>gi|262371958|ref|ZP_06065237.1| cell division protein [Acinetobacter junii SH205]
 gi|262311983|gb|EEY93068.1| cell division protein [Acinetobacter junii SH205]
          Length = 631

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
 gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM
           3776]
          Length = 714

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A    R V   L+   + Q L   +     P+ +LLVGP G GKT +++ +A
Sbjct: 223 QDVAGIDEAVEELREVVEFLKTPEKYQALGGRI-----PRGVLLVGPPGTGKTLLAKAVA 277

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RD+   A
Sbjct: 278 GEAGVPFYGLSGSDFVEM-FVGVGAARV-RDMFQQA 311


>gi|254449004|ref|ZP_05062458.1| ATP-dependent chaperone ClpB [gamma proteobacterium HTCC5015]
 gi|198261398|gb|EDY85689.1| ATP-dependent chaperone ClpB [gamma proteobacterium HTCC5015]
          Length = 854

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + + L + ++GQ +A RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEAALHQRVVGQDEAVRAVSDAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 614 KALAAFLFDTEDAMVRIDMSEFMEKHSVARLV 645


>gi|145545762|ref|XP_001458565.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426385|emb|CAK91168.1| unnamed protein product [Paramecium tetraurelia]
          Length = 710

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K   +     L N  + +QL A +     P+  LL GP G GKT +++  A 
Sbjct: 257 DVAGLDEVKVEIKEFVDFLTNSKKFKQLGAKI-----PRGALLTGPPGTGKTMLAKACAG 311

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  V  ++F E+ +VG    ++ RDL + A
Sbjct: 312 EAGVPFFYVSGSEFVEM-FVGLGASRV-RDLFEQA 344


>gi|157873939|ref|XP_001685467.1| ATP-dependent zinc metallopeptidase; metallo-peptidase, Clan MA(E),
           Family M41 [Leishmania major
 gi|68128539|emb|CAJ08671.1| putative ATP-dependent zinc metallopeptidase [Leishmania major
           strain Friedlin]
          Length = 718

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 35/210 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M++     P+    E+     + +IG  +AK  +      L+   +  +L A L     P
Sbjct: 190 MEMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPSKFTRLGARL-----P 244

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A  PF       F EI  G   + V ++  +    A 
Sbjct: 245 KGCLLTGQPGTGKTLLARAVAGEASTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAP 304

Query: 112 NIVRESRRDEVREQ-------------ASINAEERILDALVGKTATS--------NTREV 150
            +V     D +  +                    ++L  L G T+          N  E 
Sbjct: 305 CVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEA 364

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             K L      D+++ I + D  +    F+
Sbjct: 365 IDKALLREGRFDRKVTIPMPDHKARCELFE 394


>gi|318604489|emb|CBY25987.1| clpb protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|330863598|emb|CBX73708.1| chaperone protein clpB [Yersinia enterocolitica W22703]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|297180993|gb|ADI17195.1| hypothetical protein [uncultured Rhodobacterales bacterium
           HF0070_10D05]
          Length = 872

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L+  ++GQ++A   +A A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 560 KMEDHLEARVVGQEEAVHVLANAVR------RARAGLNDEKQPLGSFLFLGPTGVGKTEL 613

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ +A          ++++++++ E   V R
Sbjct: 614 TKAIAEFLFDDDNAMVRIDMSEYMEKHSVSR 644


>gi|303240182|ref|ZP_07326702.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302592273|gb|EFL62001.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 604

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           K     +  +        + G  + K   + +   L+   +  +L A +     PK +LL
Sbjct: 146 KSRAKMTIDDKKKITFNDVAGADEEKEELKEIVEFLKQPKKFVELGARI-----PKGVLL 200

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT +++ ++  AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 201 VGPPGTGKTLLAKAVSGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFDQAKKN 253


>gi|260063604|ref|YP_003196684.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
 gi|88783049|gb|EAR14222.1| putative transmembrane AAA-metalloprotease FtsH [Robiginitalea
           biformata HTCC2501]
          Length = 696

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 196 KDVAGLEGAKEEVEEIVEFLKNPDKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 251 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 284


>gi|289641314|ref|ZP_06473480.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289508912|gb|EFD29845.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 673

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK   R +   LR+  R +Q  A       P  +L+VGP G GKT ++R +A 
Sbjct: 190 DVAGYEGAKQEVREIIDFLRDPERYRQAGAK-----GPGGVLMVGPPGTGKTLLARAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF+ V  + F E+ +VG    ++ RDL   A
Sbjct: 245 EAEVPFLSVSGSGFVEM-FVGVGASRV-RDLFGEA 277


>gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
 gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM
           20109]
          Length = 682

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L    + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 172 DVAGVDEAVEELQEIKEFLSEPSKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 227 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 259


>gi|126666667|ref|ZP_01737644.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
 gi|126628712|gb|EAZ99332.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           sp. ELB17]
          Length = 328

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 32  MEEALHKRVIGQNEAVEAVANAVR------RSRAGLSDPHRPNGSFLFLGPTGVGKTELC 85

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 86  KALASFLFDTDDAMVRIDMSEFMEKHSVAR 115


>gi|123441247|ref|YP_001005234.1| protein disaggregation chaperone [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088208|emb|CAL10996.1| Clp ATPase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 296 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 349

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 350 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 392


>gi|332160283|ref|YP_004296860.1| protein disaggregation chaperone [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664513|gb|ADZ41157.1| protein disaggregation chaperone [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|258513609|ref|YP_003189831.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777314|gb|ACV61208.1| ATPase AAA-2 domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 810

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 506 KMEEILHQRVIGQEEAVRAVSRAVR------RARAGLKDPGRPVGSFIFLGPTGVGKTEL 559

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 560 ARALAEALFGDDDALIRIDMSEYMEKYAVSRLV 592


>gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM
           15894]
          Length = 669

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++A   +      L    + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 170 DVAGAEEAVEELHEIKEFLAEPTKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 225 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|124023163|ref|YP_001017470.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
 gi|123963449|gb|ABM78205.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9303]
          Length = 619

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
             P+E +      + G  +AK  +   +   + RQ         L+P+ +LLVG  G GK
Sbjct: 152 LKPQEDLPIRFDDVAGITEAKEELQEVVT--FLRQPESFIKLGALIPRGVLLVGAPGTGK 209

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T +++ +A  A  PF  +  ++F E+ +VG     V  + R   + A  IV     D V
Sbjct: 210 TLLAKAIAGEADVPFFSMAASEFVEL-FVGVGASRVRDLFRKAKEKAPCIVFIDEIDAV 267


>gi|114778158|ref|ZP_01453045.1| AAA ATPase, central region:Clp, N terminal [Mariprofundus
           ferrooxydans PV-1]
 gi|114551576|gb|EAU54130.1| AAA ATPase, central region:Clp, N terminal [Mariprofundus
           ferrooxydans PV-1]
          Length = 752

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 20/114 (17%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ  A   +A +++              E    + L  GPTGVGKT  
Sbjct: 452 AHLDRDLKLSVFGQDKAIDQLAASIK-----LSRAGLAHPEKPIGSFLFTGPTGVGKTEA 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +R+LAR+ G   I+ +++++ E            GYVG +   ++ + ++   +
Sbjct: 507 ARQLARIMGVELIRFDMSEYMESHTVSRLIGAPPGYVGFDQGGLLTEAINKNPH 560


>gi|113953333|ref|YP_729587.1| cell division protein FtsH [Synechococcus sp. CC9311]
 gi|113880684|gb|ABI45642.1| cell division protein FtsH [Synechococcus sp. CC9311]
          Length = 617

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK  LLVGP G GKT +++ +A 
Sbjct: 163 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGCLLVGPPGTGKTLLAKAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 218 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|19745212|ref|NP_606348.1| cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21909548|ref|NP_663816.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28894925|ref|NP_801275.1| cell division protein [Streptococcus pyogenes SSI-1]
 gi|50913359|ref|YP_059331.1| cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94989522|ref|YP_597622.1| cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94993409|ref|YP_601507.1| cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|139472901|ref|YP_001127616.1| cell division protease FtsH [Streptococcus pyogenes str. Manfredo]
 gi|209558599|ref|YP_002285071.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|306826398|ref|ZP_07459712.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
 gi|19747301|gb|AAL96847.1| putative cell division protein [Streptococcus pyogenes MGAS8232]
 gi|21903728|gb|AAM78619.1| putative cell division protein [Streptococcus pyogenes MGAS315]
 gi|28810170|dbj|BAC63108.1| putative cell division protein [Streptococcus pyogenes SSI-1]
 gi|50902433|gb|AAT86148.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10394]
 gi|94543030|gb|ABF33078.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10270]
 gi|94546917|gb|ABF36963.1| Cell division protein ftsH [Streptococcus pyogenes MGAS10750]
 gi|134271147|emb|CAM29357.1| putative cell division protease FtsH [Streptococcus pyogenes str.
           Manfredo]
 gi|209539800|gb|ACI60376.1| Cell division protein ftsH [Streptococcus pyogenes NZ131]
 gi|304431393|gb|EFM34388.1| cell division protein FtsH [Streptococcus pyogenes ATCC 10782]
          Length = 659

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|322501806|emb|CBZ36888.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 716

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 35/210 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M +     P+    E+     + +IG  +AK  +      L+   +  +L A L     P
Sbjct: 188 MDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGARL-----P 242

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A  PF       F EI  G   + V ++  +    A 
Sbjct: 243 KGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAP 302

Query: 112 NIVRESRRDEVREQ-------------ASINAEERILDALVGKTATS--------NTREV 150
            +V     D +  +                    ++L  L G T+          N  E 
Sbjct: 303 CVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEA 362

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             K L      D+++ I + D  +    F+
Sbjct: 363 IDKALLREGRFDRKVTIPMPDHKARCELFE 392


>gi|311107311|ref|YP_003980164.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Achromobacter
           xylosoxidans A8]
 gi|310762000|gb|ADP17449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Achromobacter
           xylosoxidans A8]
          Length = 770

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 20/115 (17%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ +A  A++ A++            + E      L  GPTGVGKT +
Sbjct: 454 ATLDRDLKTVVFGQDNAIEALSAAIK-----MARSGLGKPEKPIGAFLFSGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 509 ARQLAFTLGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHC 563


>gi|260431823|ref|ZP_05785794.1| ATP-dependent chaperone ClpB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415651|gb|EEX08910.1| ATP-dependent chaperone ClpB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 872

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEEALHARVVGQDEAVRAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 615 KAVAEYLFDDEHAMVRIDMSEFMEKHAVAR 644


>gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 602

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K     +   L++  R   L A +     PK +LLVGP G GKT ++R +A 
Sbjct: 159 DVAGADEEKAELEEIVEFLKDPKRFTALGARI-----PKGVLLVGPPGTGKTLLARAVAG 213

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 214 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQAKKN 249


>gi|187934823|ref|YP_001887468.1| Cell division protease FtsH homolog [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722976|gb|ACD24197.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 694

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + GQ++AK ++   + +     +   ++  +L PK  LLVGP G GKT I++ +A  A
Sbjct: 170 DDVAGQEEAKESLKE-VIDFLNCPKRYTEIGAKL-PKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             PF  +  + F E+ +VG    ++ R+L   A+
Sbjct: 228 KVPFFSLSGSSFVEM-FVGVGASRV-RELFKEAV 259


>gi|37525237|ref|NP_928581.1| protein disaggregation chaperone [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|54035796|sp|Q7N788|CLPB_PHOLL RecName: Full=Chaperone protein ClpB
 gi|36784664|emb|CAE13564.1| heat shock protein F84.1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 857

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  A++ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHKRVIGQDEAVNAISNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|33862722|ref|NP_894282.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9313]
 gi|54035808|sp|Q7V8B1|CLPB_PROMM RecName: Full=Chaperone protein ClpB
 gi|33634638|emb|CAE20624.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9313]
          Length = 865

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ+ A +AVA A+      Q+  A L D   P  + L +GPTGVGKT +S
Sbjct: 568 LEAELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELS 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA       A  ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 622 KALASQLFDSEAALVRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAVRRR 675


>gi|134298058|ref|YP_001111554.1| ATPase [Desulfotomaculum reducens MI-1]
 gi|134050758|gb|ABO48729.1| ATPase AAA-2 domain protein [Desulfotomaculum reducens MI-1]
          Length = 812

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 20/223 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ DA +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 506 LEEVLHRRVVGQDDAVKAVSRAVR------RARAGLKDPKRPVGSFIFLGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           R LA          ++++++++ E   V R V      +             + VR +  
Sbjct: 560 RALAESLFGDEDALVRIDMSEYMEKHAVSRLVGAPPGYV----GYDEGGQLTEAVRRKPY 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                 +LD +  + A  +   +  + L DG ++D    + V   ++ I      G +++
Sbjct: 616 SVV---LLDEI--EKAHPDVFNILLQVLEDGRLTDSRGRV-VDFRNTVIIMTSNVGLSTI 669

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +      +        +K++  V++      R E    ID 
Sbjct: 670 KSVGKVGFAATAQDQADYEKMKERVEEGLKRTFRPEFLNRIDE 712


>gi|88798704|ref|ZP_01114287.1| ATPase with chaperone activity, ATP-binding subunit [Reinekea sp.
           MED297]
 gi|88778467|gb|EAR09659.1| ATPase with chaperone activity, ATP-binding subunit [Reinekea sp.
           MED297]
          Length = 756

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)

Query: 10  REIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           +E+++ L+R     + GQ +A   +A A++              +    + L  GPTGVG
Sbjct: 451 KELLANLERNLKMTVFGQDEAIENIASAIK-----LARAGLKSADKPIGSFLFAGPTGVG 505

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           KT ++++LA   G   ++ +++++ E            GYVG +   ++ D V+   + 
Sbjct: 506 KTEVTKQLAESLGVELLRFDMSEYMERHTASRLIGAPPGYVGFDQGGLLTDGVNRHPHC 564


>gi|84501333|ref|ZP_00999538.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
 gi|84390624|gb|EAQ03112.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola
           batsensis HTCC2597]
          Length = 872

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L R +IGQQ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 565 LHRRVIGQQTAVRAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVAR 644


>gi|321398580|emb|CAM70948.2| metallo-peptidase, Clan MA(E), Family M41 [Leishmania infantum
           JPCM5]
          Length = 716

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 35/210 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M +     P+    E+     + +IG  +AK  +      L+   +  +L A L     P
Sbjct: 188 MDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGARL-----P 242

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A  PF       F EI  G   + V ++  +    A 
Sbjct: 243 KGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAP 302

Query: 112 NIVRESRRDEVREQ-------------ASINAEERILDALVGKTATS--------NTREV 150
            +V     D +  +                    ++L  L G T+          N  E 
Sbjct: 303 CVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEA 362

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             K L      D+++ I + D  +    F+
Sbjct: 363 IDKALLREGRFDRKVTIPMPDHKARCELFE 392


>gi|262376625|ref|ZP_06069853.1| cell division protein [Acinetobacter lwoffii SH145]
 gi|262308335|gb|EEY89470.1| cell division protein [Acinetobacter lwoffii SH145]
          Length = 629

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A +     P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPTKFKRLGASI-----PRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|192973027|gb|ACF06927.1| ATP binding ATPase ClpA [uncultured Roseobacter sp.]
          Length = 869

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ  A +AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 558 MEEELHARVIGQSAAVKAVSNAVR------RARAGLNDESRPLGSFLFLGPTGVGKTELT 611

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + +A       A  +++++++F E            GYVG +   ++ + V      V  
Sbjct: 612 KAVANFLFDDDAAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQV-- 669

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 670 VLFDEV-EKAHPDVFNILLQVL 690


>gi|218782102|ref|YP_002433420.1| ATP-dependent metalloprotease FtsH [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763486|gb|ACL05952.1| ATP-dependent metalloprotease FtsH [Desulfatibacillum alkenivorans
           AK-01]
          Length = 663

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A   ++  +   R+  +  +L   +     PK +LL+GP G GKT ++R +A
Sbjct: 150 DDVAGVDEALEELSEIVEFLRDPRKFTRLGGRI-----PKGVLLMGPPGSGKTLLARAIA 204

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 205 GEAEVPFFTISGSDFVEM-FVGVGASRV-RDLFMQGKKSAPCIIFIDEIDAV 254


>gi|22126686|ref|NP_670109.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis KIM
           10]
 gi|45441052|ref|NP_992591.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|21959703|gb|AAM86360.1|AE013884_7 ATP-binding component of serine protease [Yersinia pestis KIM 10]
 gi|45435911|gb|AAS61468.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 760

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L+  + GQ  A  A++ A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 451 RNLSDRLNMLVFGQDKAIEALSEAIK------MSRAGLGHERQPVGSFLFAGPTGVGKTE 504

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 505 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDSVIKHPH 559


>gi|51595734|ref|YP_069925.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145599599|ref|YP_001163675.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           Pestoides F]
 gi|153949196|ref|YP_001401571.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024917|ref|YP_001721422.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186894811|ref|YP_001871923.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589016|emb|CAH20634.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145211295|gb|ABP40702.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           pestis Pestoides F]
 gi|152960691|gb|ABS48152.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pseudotuberculosis IP 31758]
 gi|169751451|gb|ACA68969.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Yersinia
           pseudotuberculosis YPIII]
 gi|186697837|gb|ACC88466.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 758

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L+  + GQ  A  A++ A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 RNLSDRLNMLVFGQDKAIEALSEAIK------MSRAGLGHERQPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDSVIKHPH 557


>gi|108806655|ref|YP_650571.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           Antiqua]
 gi|108812773|ref|YP_648540.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           Nepal516]
 gi|149366625|ref|ZP_01888659.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           CA88-4125]
 gi|165924379|ref|ZP_02220211.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938964|ref|ZP_02227517.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166009787|ref|ZP_02230685.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211245|ref|ZP_02237280.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400052|ref|ZP_02305570.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419484|ref|ZP_02311237.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167424153|ref|ZP_02315906.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218928516|ref|YP_002346391.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           CO92]
 gi|229841335|ref|ZP_04461494.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843439|ref|ZP_04463585.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895812|ref|ZP_04510982.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis Pestoides
           A]
 gi|229903186|ref|ZP_04518299.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis Nepal516]
 gi|270486979|ref|ZP_06204053.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           pestis KIM D27]
 gi|294503359|ref|YP_003567421.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|108776421|gb|ABG18940.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           pestis Nepal516]
 gi|108778568|gb|ABG12626.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           pestis Antiqua]
 gi|115347127|emb|CAL20020.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           CO92]
 gi|149290999|gb|EDM41074.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           CA88-4125]
 gi|165913111|gb|EDR31735.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923439|gb|EDR40571.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165991183|gb|EDR43484.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207016|gb|EDR51496.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962225|gb|EDR58246.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050760|gb|EDR62168.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057002|gb|EDR66765.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229678956|gb|EEO75059.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis Nepal516]
 gi|229689786|gb|EEO81847.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697701|gb|EEO87748.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700735|gb|EEO88764.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Yersinia pestis Pestoides
           A]
 gi|262361399|gb|ACY58120.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262365064|gb|ACY61621.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270335483|gb|EFA46260.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           pestis KIM D27]
 gi|294353818|gb|ADE64159.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis
           Z176003]
          Length = 758

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L+  + GQ  A  A++ A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 RNLSDRLNMLVFGQDKAIEALSEAIK------MSRAGLGHERQPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDSVIKHPH 557


>gi|329961967|ref|ZP_08299978.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
 gi|328530615|gb|EGF57473.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides fluxus YIT 12057]
          Length = 739

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 18/106 (16%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78
           I GQ +A R V  A+      Q   A L DE  P  ++L VGPTGVGKT +++ LA   G
Sbjct: 455 IYGQDEAVRQVVEAV------QMSKAGLMDENKPLASLLFVGPTGVGKTEVAKVLATELG 508

Query: 79  APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
               + +++++TE            GY+G     ++ D +    N 
Sbjct: 509 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNC 554


>gi|261406092|ref|YP_003242333.1| Vesicle-fusing ATPase [Paenibacillus sp. Y412MC10]
 gi|261282555|gb|ACX64526.1| Vesicle-fusing ATPase [Paenibacillus sp. Y412MC10]
          Length = 500

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 31/229 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ +AK+ +  AL    R + +       L  K ILL GP G GKT +++  A   
Sbjct: 71  EEIGGQDNAKQELREALDFLIRHEDIKKFGIRPL--KGILLTGPPGTGKTLMAKAAAHYT 128

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ YVG    +I RDL   A    R     E ++ A I  +E  +D 
Sbjct: 129 DSIFVAASGSEFVEM-YVGVGAGRI-RDLFKDA----RNRAAKENKQNAIIFIDE--IDV 180

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + GK      RE  +   +     D             I + D P    +   N  E+  
Sbjct: 181 IGGKREGGQQREYDQTLNQLLTEMD------------GIYSQDTPRILVIAATNRKEMLD 228

Query: 198 KVMGSGRKKKIRMSV----QKCYPELMRDES-----DRLIDMDTVHRDS 237
             +    +    + V    +K    ++   +      + +D++ +  ++
Sbjct: 229 SALLRPGRFDRHIQVDLPDKKGRTHILNLHAGNKPLHQDVDLEKIAEEA 277


>gi|183219658|ref|YP_001837654.1| cell division protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909795|ref|YP_001961350.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774471|gb|ABZ92772.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778080|gb|ABZ96378.1| Cell division protease; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 650

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
            N  P+  V      + G  +AK  +      L++  + Q + A +     PK +LLVGP
Sbjct: 168 MNVDPK--VKVTFNDVAGCDEAKVELLEIIEFLKDPKKFQAIGARI-----PKGVLLVGP 220

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRES 117
            G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D     A  I+   
Sbjct: 221 PGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQGKKNAPCIIFID 278

Query: 118 RRDEV 122
             D V
Sbjct: 279 EIDAV 283


>gi|114776816|ref|ZP_01451859.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans
           PV-1]
 gi|114552902|gb|EAU55333.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans
           PV-1]
          Length = 643

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ V      LR   +  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 155 EDVAGCDEAKQEVTEVIEFLREPSKFTRLGGKI-----PKGVLLVGPPGTGKTLLARAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 GEAEVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKQ 246


>gi|94987644|ref|YP_595745.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94541152|gb|ABF31201.1| cell division protein [Streptococcus pyogenes MGAS9429]
          Length = 659

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 611

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 158 NDVAGADEEKEELQEIVEFLKFPKKFLDLGARI-----PKGVLLVGPPGTGKTLLAKAVA 212

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 213 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 249


>gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
 gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
          Length = 665

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K   R V   LR+  R   L A +     PK ILLVGP G GKT +++ +A 
Sbjct: 171 DVAGADEEKEELREVVEFLRDPKRFLALGARI-----PKGILLVGPPGTGKTLLAKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG  F+ +  + F E+ YVG    ++ RDL D A   
Sbjct: 226 EAGVHFLSISGSDFVEL-YVGVGASRV-RDLFDQAKKN 261


>gi|86743031|ref|YP_483431.1| ATPase AAA-2 [Frankia sp. CcI3]
 gi|86569893|gb|ABD13702.1| ATPase AAA-2 [Frankia sp. CcI3]
          Length = 869

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   +IGQ DA RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MESALHARVIGQDDAVRAVSDAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAIVRIDMSEYAEKHSVAR 651


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 292 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 345

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 346 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 388


>gi|10434929|dbj|BAB14426.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 494 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 547

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 548 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 601

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R +    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 602 AFSGADMTQLCRGASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 661

Query: 278 LVEG 281
           L E 
Sbjct: 662 LYEN 665



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 602


>gi|116626986|ref|YP_819605.1| cell division protein [Streptococcus thermophilus LMD-9]
 gi|116100263|gb|ABJ65409.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Streptococcus thermophilus LMD-9]
          Length = 655

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 93/240 (38%), Gaps = 38/240 (15%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F
Sbjct: 199 IVDFLKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDF 253

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL------VGKTA 143
            E+ +VG    ++ R L + A             E+A I  +E  +DA+           
Sbjct: 254 VEM-FVGVGASRV-RSLFEDAKKT----------ERAIIFIDE--IDAVGRRRGTGMGGG 299

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
                +   + L + +  D   +I +   +++ S+   P     G  +   L    +   
Sbjct: 300 NDEREQTLNQLLIEMDGFDGNENI-IVIAATNRSDILDPALLRPGRFDRKVLVG--LPDV 356

Query: 204 RKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYGIVFLDEFD 253
           + ++  + V      L  D + +++          D++ V  ++  +    G   +D  D
Sbjct: 357 KGREAILKVHAKNKPLAEDVNLKVVAQQTPGFVGADLENVLNEAALVAARRGKTKIDASD 416


>gi|312796158|ref|YP_004029080.1| ClpB protein [Burkholderia rhizoxinica HKI 454]
 gi|312167933|emb|CBW74936.1| ClpB protein [Burkholderia rhizoxinica HKI 454]
          Length = 364

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I ++L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 66  QIEAKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTEL 119

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 120 CKALAAFLFDTEDHLIRIDMSEFMEKHSVAR 150


>gi|282899436|ref|ZP_06307403.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281195700|gb|EFA70630.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 635

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       Q P         +PK +LLVGP G GKT +++ +A 
Sbjct: 184 DDVAGITEAKEELQEVVT----FLQQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 239

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 240 EASVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAV 288


>gi|254468529|ref|ZP_05081935.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
 gi|207087339|gb|EDZ64622.1| ATP-dependent Clp protease ATP-binding subunit ClpA [beta
           proteobacterium KB13]
          Length = 750

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   I GQ +A   ++ A++           L D     + +  GPTGVGKT +
Sbjct: 439 RNLDRDLKAIIFGQDEAINKLSTAIK-----MARSGLLSDNKPIGSFMFSGPTGVGKTEV 493

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +++LA   G   I++++++F E            GYVG +    + + ++    
Sbjct: 494 AKQLAYTLGIELIRIDMSEFMERHAVSKLIGAPPGYVGFDQGGTLTESINKNPY 547


>gi|58865396|ref|NP_001011913.1| fidgetin-like protein 1 [Rattus norvegicus]
 gi|81911001|sp|Q6GX84|FIGL1_RAT RecName: Full=Fidgetin-like protein 1
 gi|48686585|gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus]
 gi|48686587|gb|AAT46049.1| fidgetin-like 1 [Rattus norvegicus]
 gi|149016958|gb|EDL76063.1| rCG24478 [Rattus norvegicus]
          Length = 677

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 404 EDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 461

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 462 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 496



 Score = 38.0 bits (87), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 19/232 (8%)

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
            N E R+++ L+      +   V  + +   E +   I   V         F    G   
Sbjct: 380 KNVEPRMVE-LIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPK 438

Query: 188 GILNLSE------LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
           GIL          L  K + S                    E ++++        ++   
Sbjct: 439 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV----RALFAVARC 494

Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTDHILFI 299
           +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+    I
Sbjct: 495 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 554

Query: 300 ASGAFH--VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
              A    V R    LPE   R  + V+L  ++K    L   +TE  L++Q 
Sbjct: 555 DEAARRRLVKRLYIPLPEASARKQIVVNL--MSKEQCCLTDEETE--LVVQQ 602


>gi|327189212|gb|EGE56391.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium
           etli CNPAF512]
          Length = 814

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 452 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 505

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 506 KQLASSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 559


>gi|315635103|ref|ZP_07890381.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393]
 gi|315476065|gb|EFU66819.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393]
          Length = 856

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|309789553|ref|ZP_07684134.1| ATP-dependent chaperone ClpB [Oscillochloris trichoides DG6]
 gi|308228289|gb|EFO81936.1| ATP-dependent chaperone ClpB [Oscillochloris trichoides DG6]
          Length = 859

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 562 KMEERLHLRVIGQDEAVAAVSNAVR------RSRAGLQDPRRPLGSFLFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 616 ARALAEFLFDDEQAMVRIDMSEYMEKHTVAR 646


>gi|262278062|ref|ZP_06055847.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258413|gb|EEY77146.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
          Length = 631

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|303273680|ref|XP_003056193.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462277|gb|EEH59569.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 886

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 21/118 (17%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + +IGQ  A  +VA A+      Q+  ADL D   P  + + +GPTGVGKT +
Sbjct: 569 QLDAELHQRVIGQDHAVTSVAEAV------QRSRADLSDPNGPVASFMFLGPTGVGKTEL 622

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++ LA          I+++++++ E            GY+G +   ++ D V      
Sbjct: 623 AKALANYLFNSDNALIRLDMSEYMEKHSVARLIGAPPGYIGYDEGGMLTDAVRQKPYS 680


>gi|218290651|ref|ZP_03494742.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239316|gb|EED06514.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 602

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 189 RIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 246

Query: 111 INI 113
              
Sbjct: 247 KKN 249


>gi|149704647|ref|XP_001498326.1| PREDICTED: fidgetin-like 1 [Equus caballus]
          Length = 677

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 381 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PK 438

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 439 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 496



 Score = 37.2 bits (85), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 490 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 549

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLIL 338
               I   A    V R    LPE   R  + V+L S     L++ +  L++
Sbjct: 550 RPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLSEEEIELVV 600


>gi|153954953|ref|YP_001395718.1| hypothetical protein CKL_2335 [Clostridium kluyveri DSM 555]
 gi|219855398|ref|YP_002472520.1| hypothetical protein CKR_2055 [Clostridium kluyveri NBRC 12016]
 gi|146347811|gb|EDK34347.1| ClpA [Clostridium kluyveri DSM 555]
 gi|219569122|dbj|BAH07106.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 746

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            GQ++A  ++  A+    +R +   +  D     ++L VGPTGVGKT IS++LA+    P
Sbjct: 459 FGQEEAIDSLVRAI----KRSRAGFN-EDNKTVASLLFVGPTGVGKTEISKQLAKALNIP 513

Query: 81  FIKVEVTKFTEIGYVGRNVEQ 101
           FI+ +++++ E   V R V  
Sbjct: 514 FIRFDMSEYQEKHTVARLVGS 534


>gi|84514618|ref|ZP_01001982.1| Chaperone ClpB [Loktanella vestfoldensis SKA53]
 gi|84511669|gb|EAQ08122.1| Chaperone ClpB [Loktanella vestfoldensis SKA53]
          Length = 882

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ+ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 571 MEDALGKRVIGQKTAVRAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 624

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 625 KAVAEYLFDDDSAMVRIDMSEFMEKHAVSR 654


>gi|330504834|ref|YP_004381703.1| membrane protease FtsH catalytic subunit [Pseudomonas mendocina
           NK-01]
 gi|328919120|gb|AEB59951.1| membrane protease FtsH catalytic subunit [Pseudomonas mendocina
           NK-01]
          Length = 637

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVSELVEFLRDPGKFQRLGGRI-----PRGVLMVGSPGTGKTLLAKAVAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKH 245


>gi|308175888|ref|YP_003915294.1| cell division protein FtsH [Arthrobacter arilaitensis Re117]
 gi|307743351|emb|CBT74323.1| putative cell division protein FtsH [Arthrobacter arilaitensis
           Re117]
          Length = 641

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +      L+   + Q + A +     PK +LL GP G GKT +++ +A
Sbjct: 167 KDVAGADEAVEELHEIKEFLQEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLAKAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 GEAQVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 255


>gi|300697571|ref|YP_003748232.1| protease ATP-dependent zinc-metallo, cell division protein ftsH
           homolog [Ralstonia solanacearum CFBP2957]
 gi|299074295|emb|CBJ53842.1| protease, ATP-dependent zinc-metallo, cell division protein ftsH
           homolog [Ralstonia solanacearum CFBP2957]
          Length = 646

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  ++  +       R++R           +PK +LLVG  G GKT +++ +
Sbjct: 173 DVAGIDEAKEELSEIVSFLKEPLRYQRLGG-------RIPKGVLLVGAPGTGKTLLAKAV 225

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           A  A  PF  +  + F E+ +VG    ++ RDL + A  +
Sbjct: 226 AGEAAVPFFSMSGSDFVEM-FVGVGAARV-RDLFNQAERM 263


>gi|261344321|ref|ZP_05971965.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Providencia
           rustigianii DSM 4541]
 gi|282567926|gb|EFB73461.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Providencia
           rustigianii DSM 4541]
          Length = 761

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + S L   + GQ  A  A+  A++             D     + L  GPTGVGKT +
Sbjct: 452 RTLDSRLKMLVFGQDKAIEALTEAIK-----MNRAGLGLDHKPVGSFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 507 TVQLAKALDVKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 561


>gi|242279302|ref|YP_002991431.1| ATP-dependent Clp protease ATP-binding protein ClpA [Desulfovibrio
           salexigens DSM 2638]
 gi|242122196|gb|ACS79892.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           salexigens DSM 2638]
          Length = 769

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           +E+   L   + GQ +A   +  A+       +  A ++    P    LL GPTGVGKT 
Sbjct: 461 QELDINLKSVVFGQDEAVDLITKAI------LRSRAGMKQVGRPTGSFLLTGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++R+LA   G  F++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 515 LARQLASTMGVHFMRFDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTEGVRKNPHC 570


>gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 741

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            +IG  + K  +      L+N  + Q   A L     PK ILLVGP G GKT ++R LA 
Sbjct: 308 DVIGIDEFKEELTELVDYLKNPKKYQDAGAKL-----PKGILLVGPPGTGKTLLARALAG 362

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG  F     ++F E+ +VG     V ++ +     A +I+     D V
Sbjct: 363 EAGCSFYYKSGSEFDEM-FVGVGASRVRELFKKARQTAPSIIFIDEIDSV 411


>gi|2062173|gb|AAB63647.1| cell division protein FtsH isolog [Arabidopsis thaliana]
          Length = 983

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 19/186 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 597 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 648

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 649 GASRVRALYQEARENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVS 701

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 702 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMA 761

Query: 214 KCYPEL 219
           +    +
Sbjct: 762 EDLDYM 767


>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
          Length = 864

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            PK +LL GP G GKT ++  +A     PFIKV   +   IG    + EQ IRDL + AI
Sbjct: 195 PPKGLLLHGPPGCGKTLLASAIAGEWEVPFIKVSAPEL--IGGTSGDSEQFIRDLFEQAI 252

Query: 112 NIVRESRRDEV------------REQASINAEERILDALV 139
            I +  +R  +            RE A    E RI+  L+
Sbjct: 253 AIAQRDKRGCIVFLDEIDTITSKRENAQREMERRIVAQLM 292



 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             P  +LL GP G GKT +++ LA    A FI ++  +     +VG + E+ +R L   A
Sbjct: 604 RKPPGVLLYGPPGCGKTLLAKALANSCNANFISIKGPELMNK-FVGES-ERAVRQLFTRA 661


>gi|293609977|ref|ZP_06692279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828429|gb|EFF86792.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 631

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|269216263|ref|ZP_06160117.1| ATP-dependent metalloprotease FtsH [Slackia exigua ATCC 700122]
 gi|269130522|gb|EEZ61600.1| ATP-dependent metalloprotease FtsH [Slackia exigua ATCC 700122]
          Length = 711

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +A   +      L +  + Q+L A +     P+  LLVGP G GKT ++R +A 
Sbjct: 199 DVAGEDEAVEELQEIKDFLMDPGKYQKLGAKI-----PRGCLLVGPPGTGKTLLARAVAG 253

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  +     D A  I+     D V
Sbjct: 254 EAKVPFFSISGSEFVEM-FVGVGASRVRSLFEQAKDAAPAIIFIDEIDAV 302


>gi|251796464|ref|YP_003011195.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
 gi|247544090|gb|ACT01109.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
          Length = 499

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 50/249 (20%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMP------KNILLVGPTGVGKTAISRRLAR 75
           GQ  AK+ +  AL             +DE+        K ILL GP G GKT +++  A 
Sbjct: 75  GQDRAKQELTEAL--------DFLVKQDEIAKLGIRPMKGILLTGPPGTGKTLLAKAAAH 126

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
              + ++    ++F E+ YVG    +I RDL   A    RE  R   ++ A I  +E  +
Sbjct: 127 YTDSIYLAASGSEFVEM-YVGVGAGRI-RDLFKEA----REKARKASKKSAVIFIDE--I 178

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D + GK      RE  +   +     D             I + + P    +   N  E+
Sbjct: 179 DVIGGKRDGGQHREYDQTLNQLLTEMD------------GIHSDEAPRILIIAATNRKEM 226

Query: 196 FSKVMGSGRKKKIRMSV-----QKCYPELMRDESDR----LIDMDTVHRDS-------IQ 239
               +    +    + V     +     L    +++     +D++ +  +S       ++
Sbjct: 227 LDSALLRPGRFDRHIGVDLPDKKGRLHILRLHAANKPLDESVDLERIASESFGFSGAQLE 286

Query: 240 MVENYGIVF 248
            V N G ++
Sbjct: 287 SVMNEGAIY 295


>gi|119587131|gb|EAW66727.1| spastic paraplegia 7, paraplegin (pure and complicated autosomal
           recessive), isoform CRA_b [Homo sapiens]
          Length = 782

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|114664150|ref|XP_001140165.1| PREDICTED: paraplegin isoform 3 [Pan troglodytes]
          Length = 714

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 228 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 282

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 283 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 335


>gi|83588978|ref|YP_428987.1| FtsH-2 peptidase [Moorella thermoacetica ATCC 39073]
 gi|83571892|gb|ABC18444.1| membrane protease FtsH catalytic subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 645

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  +L A +     PK +LL GP G GKT ++R +A  AG PF  +  + F E+ 
Sbjct: 176 LKNPRKFNELGARI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 229

Query: 94  YVGRNVEQIIRDLVDVAINI 113
           +VG    ++ RDL + A   
Sbjct: 230 FVGVGASRV-RDLFEQAKKN 248


>gi|331092500|ref|ZP_08341322.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400721|gb|EGG80324.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 611

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 20  IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+ K     +   L+   +  Q+ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 165 VAGLQEEKEDLEEIVDFLKEPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 220 AGVPFFTISGSDFVEM-FVGVGASRV-RDLFEEAKKN 254


>gi|262363053|gb|ACY59774.1| Clp ATPase [Yersinia pestis D106004]
          Length = 733

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 438 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 491

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 492 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 523


>gi|222099058|ref|YP_002533626.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359]
 gi|221571448|gb|ACM22260.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A    + V   L++  +  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 161 KDVGGADEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 216 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA 249


>gi|150396336|ref|YP_001326803.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           medicae WSM419]
 gi|150027851|gb|ABR59968.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           medicae WSM419]
          Length = 838

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 466 LEQELRSVVYGQDLAIEALASSIK------LARAGLREPNKPIGCYVFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 KQLATSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|332185365|ref|ZP_08387113.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
 gi|332014343|gb|EGI56400.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
          Length = 859

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA RAV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEEVLGARVIGQEDAVRAVSTAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGR 97
           + LA      P   +++++++F E   V R
Sbjct: 617 KALAEFLFDDPSAMVRLDMSEFMEKHSVAR 646


>gi|299769011|ref|YP_003731037.1| cell division protein [Acinetobacter sp. DR1]
 gi|298699099|gb|ADI89664.1| cell division protein [Acinetobacter sp. DR1]
          Length = 642

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 169 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 224 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKGH 259


>gi|293606998|ref|ZP_06689342.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
 gi|292814595|gb|EFF73732.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC
           43553]
          Length = 629

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|171058347|ref|YP_001790696.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Leptothrix
           cholodnii SP-6]
 gi|170775792|gb|ACB33931.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Leptothrix
           cholodnii SP-6]
          Length = 766

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 98/262 (37%), Gaps = 28/262 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A++ A++            + E      L  GPTGVGKT +
Sbjct: 456 KSLDRDLKSVVFGQDGAIDALSGAIK-----MARSGLGKPEKPIGAFLFSGPTGVGKTEV 510

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA + G   I+ +++++ E            GYVG +   ++ + V    + V    
Sbjct: 511 AKQLAYILGIDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHCVL--L 568

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T N         R  +  +  I +     +  +  
Sbjct: 569 LDEI-EKAHPDVFNVLLQVMDHGTLTDNNG-------RKADFRNVIIVMTTNAGAETMQK 620

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
             I   +     +      ++     + ++   V   +  L  +   R++D   +  +  
Sbjct: 621 ATIGFTSHRETGDEMGDIKRMFTPEFRNRLDAIVS--FRALDEEIIMRVVDKFLLQLEGQ 678

Query: 239 QMVENYGIVFLDEFDKIVARDS 260
              +   + F D   K +A+  
Sbjct: 679 LGEKKVDVTFTDAIRKHLAKKG 700


>gi|158335586|ref|YP_001516758.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305827|gb|ABW27444.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 611

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 156 NDVAGIEQAKLELTEVVDFLKNADRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 211 GEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQA 244


>gi|119774091|ref|YP_926831.1| vesicle-fusing ATPase [Shewanella amazonensis SB2B]
 gi|119766591|gb|ABL99161.1| membrane protease FtsH catalytic subunit [Shewanella amazonensis
           SB2B]
          Length = 650

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  V   +   + R           +P  +L+VGP G GKT +++ +A  A 
Sbjct: 158 DVAGCDEAKEEVKEMVD--YLRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGEAK 215

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RD+ D A
Sbjct: 216 VPFFTISGSDFVEM-FVGVGASRV-RDMFDQA 245


>gi|299753427|ref|XP_001833271.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130]
 gi|298410295|gb|EAU88544.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130]
          Length = 766

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 5   FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR--DELMPKNILLVGPT 62
             F P E  +     + G  +AK  +   +    +  + PA        +PK +LL GP 
Sbjct: 305 TQFEPSEGKAVKFSDVHGVDEAKEELQDIV----QFLKDPAAFSSLGGKLPKGVLLTGPP 360

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           G GKT ++R +A  AG PF     + F E+ +VG   +++ R+L   A            
Sbjct: 361 GTGKTMLARAVAGEAGVPFFFASGSDFEEM-FVGVGAKRV-RELFAAA----------RK 408

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           +E A I  +E  LDA+ G   +S  ++  ++ L  
Sbjct: 409 KEPAIIFIDE--LDAV-GGKRSSRDQQYMKQTLNQ 440


>gi|294142195|ref|YP_003558173.1| clpB protein [Shewanella violacea DSS12]
 gi|293328664|dbj|BAJ03395.1| clpB protein [Shewanella violacea DSS12]
          Length = 857

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ +A  AV+ A+     R+        E    + L +GPTGVGKT + +
Sbjct: 562 MEEALHQTVIGQNEAVDAVSNAI-----RRSRAGLADPERPIGSFLFLGPTGVGKTELCK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA+      A  +++++++F E   V R
Sbjct: 617 SLAKFLFDTEAAMVRIDMSEFMEKHSVAR 645


>gi|302535377|ref|ZP_07287719.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
 gi|302444272|gb|EFL16088.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
          Length = 866

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAVA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 571 MEDELGRRLIGQTEAVRAVADAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 625

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 626 ALADFLFDDERAMVRIDMSEYSEKHSVARLV 656


>gi|163857844|ref|YP_001632142.1| cell division protein FtsH [Bordetella petrii DSM 12804]
 gi|163261572|emb|CAP43874.1| cell division protein FtsH [Bordetella petrii]
          Length = 628

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
 gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
          Length = 681

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPK 54
           + F  S  ++VSE       + + G  + K     V   L+   +  ++ A +     PK
Sbjct: 145 MNFGKSKAKLVSEDKKKARFKDVAGADEEKQELEEVVEFLKEPRKFAEIGARI-----PK 199

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LLVGP G GKT I+R +A  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 200 GVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|33239707|ref|NP_874649.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237232|gb|AAP99301.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 599

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK  +A     L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 145 DVAGIEGAKLELAEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 199

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 200 EAAVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 235


>gi|194098118|ref|YP_002001166.1| cell division protein FtsH [Neisseria gonorrhoeae NCCP11945]
 gi|239998574|ref|ZP_04718498.1| cell division protein FtsH [Neisseria gonorrhoeae 35/02]
 gi|240013699|ref|ZP_04720612.1| cell division protein FtsH [Neisseria gonorrhoeae DGI18]
 gi|240016139|ref|ZP_04722679.1| cell division protein FtsH [Neisseria gonorrhoeae FA6140]
 gi|240117520|ref|ZP_04731582.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|240120768|ref|ZP_04733730.1| cell division protein FtsH [Neisseria gonorrhoeae PID24-1]
 gi|240125326|ref|ZP_04738212.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
 gi|268594433|ref|ZP_06128600.1| cell division protein ftsH [Neisseria gonorrhoeae 35/02]
 gi|268603219|ref|ZP_06137386.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|268683927|ref|ZP_06150789.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
 gi|193933408|gb|ACF29232.1| cell division protein FtsH [Neisseria gonorrhoeae NCCP11945]
 gi|268547822|gb|EEZ43240.1| cell division protein ftsH [Neisseria gonorrhoeae 35/02]
 gi|268587350|gb|EEZ52026.1| cell division protein FtsH [Neisseria gonorrhoeae PID1]
 gi|268624211|gb|EEZ56611.1| cell division protein FtsH [Neisseria gonorrhoeae SK-92-679]
          Length = 655

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|116075678|ref|ZP_01472937.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
 gi|116066993|gb|EAU72748.1| cell division protein FtsH2 [Synechococcus sp. RS9916]
          Length = 615

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK  LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGCLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|58584410|ref|YP_197983.1| ATP-dependent Zn protease, HflB [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418726|gb|AAW70741.1| ATP-dependent Zn protease, HflB [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 609

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--VLGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|15639065|ref|NP_218511.1| ATP-dependent Clp protease subunit B (clpB) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025305|ref|YP_001933077.1| ATP-dependent Clp protease, subunit B [Treponema pallidum subsp.
           pallidum SS14]
 gi|6647449|sp|O83110|CLPB_TREPA RecName: Full=Chaperone protein ClpB
 gi|3322325|gb|AAC65062.1| ATP-dependent Clp protease subunit B (clpB) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189017880|gb|ACD70498.1| ATP-dependent Clp protease, subunit B [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059487|gb|ADD72222.1| ATP-dependent chaperone protein ClpB [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 878

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + ++GQ +A R ++ A+R      +  A L D   P  + L VGPTGVGKT +
Sbjct: 565 QLESVLMQRVVGQDEAVRVISDAIR------RNKAGLSDTRRPLGSFLCVGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +R LA           +++++++ E            GYVG +
Sbjct: 619 ARTLADFLFNDERALTRIDMSEYMEKHAISRLIGAPPGYVGYD 661


>gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 510

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + +   
Sbjct: 86  RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAK 144

Query: 108 DVAINIVRESRRDEV 122
           + A  ++     D V
Sbjct: 145 ENAPCLIFIDEIDAV 159


>gi|332522221|ref|ZP_08398473.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313485|gb|EGJ26470.1| ATP-dependent metallopeptidase HflB [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 658

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|325264334|ref|ZP_08131065.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5]
 gi|324030405|gb|EGB91689.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5]
          Length = 606

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   LR+  +  Q+ A +     PK +LL GP G GKT +++ +A  AG PF  +  + F
Sbjct: 179 IVDFLRSPKKYIQVGARI-----PKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 233

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL   A   
Sbjct: 234 VEM-FVGVGASRV-RDLFQDAKKN 255


>gi|319956043|ref|YP_004167306.1| ATP-dependent clp protease, ATP-binding subunit clpa
           [Nitratifractor salsuginis DSM 16511]
 gi|319418447|gb|ADV45557.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Nitratifractor salsuginis DSM 16511]
          Length = 733

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 103/251 (41%), Gaps = 35/251 (13%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I+GQ++A   ++ A++  +     P     E    + L VGPTGVGKTA+++ LA   G 
Sbjct: 448 IVGQEEAITRLSQAIKRSYAGLNHP-----ESPIGSFLFVGPTGVGKTALAQVLAETLGV 502

Query: 80  PFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            F +++++++ E            GYVG     ++ +++    + V     DE+ E+A  
Sbjct: 503 HFERLDMSEYMEKHAVSRLIGAPPGYVGYEQGGLLTEMIKKHPHTVL--LLDEI-EKAHP 559

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           +    +L  +     T N          +G +SD +  I +  ++       + G    G
Sbjct: 560 DIMNILLQVMDSAKLTDN----------NGIVSDFKNVILIMTSNLGTKEPGVMGFTKEG 609

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248
                    +      + ++  +V+  +  L   E ++++ +  +   + Q+ +    V 
Sbjct: 610 GAKSKRAMREFFSPEFRNRLSATVE--FAPLSLKELEKIVKL-QIGDLNEQLADKKVRV- 665

Query: 249 LDEFDKIVARD 259
             + DK   + 
Sbjct: 666 --KLDKAARKK 674


>gi|260912679|ref|ZP_05919165.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
 gi|260633057|gb|EEX51222.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
          Length = 855

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 561 MEDELHKRVIGQHEAIEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 615 KTLANFLFDDENAMVRIDMSEFMEKHSVSRLV 646


>gi|148269483|ref|YP_001243943.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1]
 gi|281411799|ref|YP_003345878.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10]
 gi|147735027|gb|ABQ46367.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1]
 gi|281372902|gb|ADA66464.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10]
          Length = 610

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A    R V   L++  +  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 161 KDVGGADEAIEELREVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 216 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA 249


>gi|18423480|ref|NP_568787.1| FTSH11 (FtsH protease 11); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75333814|sp|Q9FGM0|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11,
           chloroplastic/mitochondrial; Short=AtFTSH11; Flags:
           Precursor
 gi|9757998|dbj|BAB08420.1| cell division protein FtsH protease-like [Arabidopsis thaliana]
 gi|20258848|gb|AAM13906.1| putative FtsH protease [Arabidopsis thaliana]
 gi|21689833|gb|AAM67560.1| putative FtsH protease [Arabidopsis thaliana]
 gi|332008934|gb|AED96317.1| cell division protease ftsH-11 [Arabidopsis thaliana]
          Length = 806

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           +L    +P + V    + + G  DAK     V   L+N  +  +L   L     PK ILL
Sbjct: 347 ELNKEITPEKNVKTF-KDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKL-----PKGILL 400

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G  G GKT +++ +A  AG PF     ++F E+ +VG    ++ R L   A
Sbjct: 401 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRV-RSLFQAA 450


>gi|320354855|ref|YP_004196194.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfobulbus
           propionicus DSM 2032]
 gi|320123357|gb|ADW18903.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfobulbus
           propionicus DSM 2032]
          Length = 756

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R +  +L   I GQ +A  A+  A+    +R +  A L +   P    L  GPTGVGKT 
Sbjct: 462 RHLDEKLKSVIFGQDEAIEALVKAV----KRSR--AGLGNPQSPTGSFLFAGPTGVGKTE 515

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           ++R+LA      F + +++++ E   V R
Sbjct: 516 VARQLAASLAVHFERFDMSEYMEKHAVAR 544


>gi|313889508|ref|ZP_07823154.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122120|gb|EFR45213.1| ATP-dependent metallopeptidase HflB [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 658

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|258405847|ref|YP_003198589.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
 gi|257798074|gb|ACV69011.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM
           5692]
          Length = 636

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +    N  +  +L   +     PK +LLVG  G GKT +SR +A 
Sbjct: 154 DVAGVDEAKEELTEIVEFLSNPKKFTRLGGRI-----PKGVLLVGGPGTGKTLLSRAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 209 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCLIFIDEIDAV 257


>gi|168181267|ref|ZP_02615931.1| cell division protease FtsH [Clostridium botulinum Bf]
 gi|237793722|ref|YP_002861274.1| ATP-dependent metalloprotease [Clostridium botulinum Ba4 str. 657]
 gi|182675342|gb|EDT87303.1| cell division protease FtsH [Clostridium botulinum Bf]
 gi|229262151|gb|ACQ53184.1| ATP-dependent metalloprotease [Clostridium botulinum Ba4 str. 657]
          Length = 576

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|153932914|ref|YP_001382781.1| ATP-dependent metalloprotease [Clostridium botulinum A str. ATCC
           19397]
 gi|153935844|ref|YP_001386332.1| ATP-dependent metalloprotease [Clostridium botulinum A str. Hall]
 gi|152928958|gb|ABS34458.1| ATP-dependent metalloprotease [Clostridium botulinum A str. ATCC
           19397]
 gi|152931758|gb|ABS37257.1| ATP-dependent metalloprotease [Clostridium botulinum A str. Hall]
          Length = 576

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|50545691|ref|XP_500384.1| YALI0B01386p [Yarrowia lipolytica]
 gi|49646250|emb|CAG82601.1| YALI0B01386p [Yarrowia lipolytica]
          Length = 708

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 28/162 (17%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT ++R +A  A  PF  V  ++F E+ YVG   +++ R+L + A 
Sbjct: 258 LPKGVLLTGPPGTGKTLLARAVAGEADVPFYFVSGSEFDEM-YVGVGAKRV-RELFEKA- 314

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
                      +  A I  +E  LDA+ G       R           ++   I+++   
Sbjct: 315 ---------RAKAPAIIFIDE--LDAIGG------KRNPKDHAYSKQTLNQLLIELDGFS 357

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
            S+ I              N  ++  K +    +    ++V+
Sbjct: 358 PSTGIVII--------AATNFPQMLDKALTRPGRFDKMVNVE 391


>gi|15639752|ref|NP_219202.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025990|ref|YP_001933762.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|6016059|sp|O83746|FTSH_TREPA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3323067|gb|AAC65728.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018565|gb|ACD71183.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
          Length = 609

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   +  ++   +     P+ +LLVGP G GKT ++R +A 
Sbjct: 142 DVAGVDEAKEELMEVVDFLKFPKKYTEIGGKI-----PRGVLLVGPPGTGKTLLARAVAG 196

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF ++  + F E+ +VG    ++ RDL   A
Sbjct: 197 EASVPFFRISGSDFIEM-FVGIGASRV-RDLFKQA 229


>gi|312890508|ref|ZP_07750044.1| membrane protease FtsH catalytic subunit [Mucilaginibacter paludis
           DSM 18603]
 gi|311296966|gb|EFQ74099.1| membrane protease FtsH catalytic subunit [Mucilaginibacter paludis
           DSM 18603]
          Length = 697

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS     + G ++AK     +   L+N  +   L   +     PK  LLVG  G GKT +
Sbjct: 209 VSVTFNDVAGLEEAKYEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGSPGTGKTLL 263

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 264 AKAVAGEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFRQA 302


>gi|306430701|emb|CBJ17097.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430749|emb|CBJ17121.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430751|emb|CBJ17122.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430763|emb|CBJ17128.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430767|emb|CBJ17130.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430769|emb|CBJ17131.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430771|emb|CBJ17132.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|262340999|ref|YP_003283854.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272336|gb|ACY40244.1| AAA-metalloprotease FtsH [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 644

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L++  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 190 KDVAGLEGAKEEVQEIVEFLKSPQKYTKLGGKI-----PKGALLIGPPGTGKTLLAKAVA 244

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 245 GEARVPFFSLSGSDFVEM-FVGVGASRV-RDLFEKA 278


>gi|254884991|ref|ZP_05257701.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|319640393|ref|ZP_07995117.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
 gi|254837784|gb|EET18093.1| ATP-dependent Clp protease [Bacteroides sp. 4_3_47FAA]
 gi|317387996|gb|EFV68851.1| ATP-dependent Clp protease [Bacteroides sp. 3_1_40A]
          Length = 742

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLYERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GY+G     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|302879457|ref|YP_003848021.1| ATP-dependent metalloprotease FtsH [Gallionella capsiferriformans
           ES-2]
 gi|302582246|gb|ADL56257.1| ATP-dependent metalloprotease FtsH [Gallionella capsiferriformans
           ES-2]
          Length = 639

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEEVSELVDFLRDPTKFQNLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKQ 246


>gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
 gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM
           12333]
          Length = 684

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +A   + + ++        PA  +     +PK +LL GP G GKT I+R +A  
Sbjct: 170 DVAGVDEAVEEL-VEIKEF---LSEPAKFQAVGAKIPKGVLLYGPPGTGKTLIARAVAGE 225

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 226 AGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 257


>gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 624

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  V+     L++  R  +L   +     PK +LLVGP G GKT ++R +A 
Sbjct: 161 DVAGIDEVKEEVSEIIDFLKDPKRFTRLGGRI-----PKGVLLVGPPGTGKTLLARAIAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 216 EAGVPFFSISGSDFVEM-FVGVGAARV-RDLFLQGKKNAPCIIFIDEIDAV 264


>gi|297699479|ref|XP_002826813.1| PREDICTED: paraplegin-like [Pongo abelii]
          Length = 794

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 308 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 362

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 363 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 415


>gi|225869502|ref|YP_002745449.1| cell division protease FtsH [Streptococcus equi subsp. equi 4047]
 gi|225698906|emb|CAW91898.1| putative cell division protease FtsH [Streptococcus equi subsp.
           equi 4047]
          Length = 656

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 187 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 241

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 242 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 280


>gi|206562175|ref|YP_002232938.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
 gi|198038215|emb|CAR54168.1| putative cell division-related metallo peptidase [Burkholderia
           cenocepacia J2315]
          Length = 635

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK  +      LR+  R Q+L   +     PK +L+VG  G GKT ++R +A
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRSPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVA 223

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 GEAGVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|119489291|ref|ZP_01622098.1| ATPase [Lyngbya sp. PCC 8106]
 gi|119454765|gb|EAW35910.1| ATPase [Lyngbya sp. PCC 8106]
          Length = 928

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L + +IGQQ+A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 605 QLESHLHQRVIGQQEAVAAVSAAIR------RARAGMKDPSRPIGSFLFMGPTGVGKTEL 658

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 659 ARALAEFLFDSEDSLIRIDMSEYMEKHAVSRLV 691


>gi|57242029|ref|ZP_00369969.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
 gi|57017221|gb|EAL54002.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195]
          Length = 530

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 28/235 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+N  + ++         MPK +L++GP GVGKT I++ +A
Sbjct: 145 NDVAGVNEVKMELNELVDFLKNPQKYKEFG-----VKMPKGVLMIGPPGVGKTLIAKAVA 199

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF     + F EI YVG     V ++      +A +I+     D V + +  ++ 
Sbjct: 200 GEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSRAKMMAPSIIFIDEIDAVGKARNELSN 258

Query: 131 EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            ER      +L  + G    S        N  E+  + L      D+ I + + D     
Sbjct: 259 GERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDEALLRSGRFDRRIFLSLPDFKDRF 318

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
              +I        ++L E  +K+        +   V +     +R  SD + D D
Sbjct: 319 KILEIYMKNKKNQVDL-EKIAKLSVGFSGAGLETLVNEAAINALRRGSDLVEDND 372


>gi|328876418|gb|EGG24781.1| peptidase M41 [Dictyostelium fasciculatum]
          Length = 1234

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + N  +  +   D+  ++ P+  +LVGP G GKT +++  A  A
Sbjct: 745 NDVAGLGEAKVEIEEFV-NFLKDPRKYHDIGAKI-PRGAILVGPPGTGKTLLAKATAGEA 802

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF     + F E+ +VG    ++ RDL + A
Sbjct: 803 NVPFFSTSGSDFVEM-FVGVGPARV-RDLFEQA 833


>gi|302338771|ref|YP_003803977.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
 gi|301635956|gb|ADK81383.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
          Length = 646

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+N  +   +   +     PK ILLVGP G GKT ++R +A
Sbjct: 196 NDVAGVEEAKDELVEVVDFLKNPTKYTAIGGKI-----PKGILLVGPPGTGKTLLARAVA 250

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG  F ++    F E+ +VG    ++ RDL   A            RE+A        
Sbjct: 251 GEAGVVFFRMSGADFVEM-FVGVGAARV-RDLFRQA------------REKAPCIIFVDE 296

Query: 135 LDALVGKTATSNTREVFRKK 154
           LDA+    A +      R++
Sbjct: 297 LDAIGKSRANNIGGNDEREQ 316


>gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
 gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
          Length = 584

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V      + G  +A    + V   LR   + Q L A      +PK +LL+GP G GKT +
Sbjct: 129 VETRFDDVAGVPEAAEELKEVITFLREPKKFQNLGAK-----VPKGVLLIGPPGTGKTLL 183

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  +G PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 184 AKAIAGESGVPFLSISASEFVEL-FVGVGASRV-RDLFSKA 222


>gi|114321124|ref|YP_742807.1| FtsH peptidase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227518|gb|ABI57317.1| membrane protease FtsH catalytic subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 639

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   LR+  + Q+L        +P+ +L+VGP G GKT +++ +A
Sbjct: 155 NDVAGCDEAKDDVAELVDFLRDPSKFQRLGG-----TIPRGVLMVGPPGTGKTLLAKAIA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  + F E+ +VG    ++ RD+   A   
Sbjct: 210 GEAKVPFFSISGSDFVEM-FVGVGASRV-RDMFSQAKKH 246


>gi|78778614|ref|YP_396726.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9312]
 gi|78712113|gb|ABB49290.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 617

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A 
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFDQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|42523406|ref|NP_968786.1| cell division protein [Bdellovibrio bacteriovorus HD100]
 gi|81617319|sp|Q6MLS7|FTSH1_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|39575612|emb|CAE79779.1| cell division protein [Bdellovibrio bacteriovorus HD100]
          Length = 645

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L++  +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 163 KEVAGVDEAKEDLQEIVSFLKDPKKYTKLGGRI-----PKGVLLVGSPGTGKTLLARAVA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL +     A  ++     D V
Sbjct: 218 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCLIFIDEIDAV 267


>gi|332704382|ref|ZP_08424470.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554531|gb|EGJ51575.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 671

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L +  R  +L   +     PK +LLVGP G GKT ++R +A
Sbjct: 155 EDVAGVDEAKEELTEIVDFLSDPKRFTRLGGRI-----PKGVLLVGPPGTGKTLLARAVA 209

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 210 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFVQGKKNAPCLIFIDEIDAV 259


>gi|322412929|gb|EFY03836.1| cell division protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 661

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|315127240|ref|YP_004069243.1| cell division protease [Pseudoalteromonas sp. SM9913]
 gi|315015754|gb|ADT69092.1| cell division protease [Pseudoalteromonas sp. SM9913]
          Length = 632

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     PK +L+VGP G GKT +++ +A 
Sbjct: 140 DVAGCDEAKDDVTELVDFLRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAG 194

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  + F E+ +VG     V  +       A  I+     D V  +
Sbjct: 195 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRK 246


>gi|296104261|ref|YP_003614407.1| protein disaggregation chaperone [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058720|gb|ADF63458.1| protein disaggregation chaperone [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 857

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHQRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|251781483|ref|YP_002995784.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390111|dbj|BAH80570.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 661

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|261378829|ref|ZP_05983402.1| ATP-dependent metalloprotease FtsH [Neisseria cinerea ATCC 14685]
 gi|269144808|gb|EEZ71226.1| ATP-dependent metalloprotease FtsH [Neisseria cinerea ATCC 14685]
          Length = 655

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|169794970|ref|YP_001712763.1| cell division protein [Acinetobacter baumannii AYE]
 gi|239503387|ref|ZP_04662697.1| cell division protein [Acinetobacter baumannii AB900]
 gi|260549222|ref|ZP_05823442.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260556452|ref|ZP_05828670.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332855129|ref|ZP_08435712.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332868237|ref|ZP_08438079.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332876155|ref|ZP_08443937.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
 gi|169147897|emb|CAM85760.1| cell division protein [Acinetobacter baumannii AYE]
 gi|193078151|gb|ABO13094.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|260407628|gb|EEX01101.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260409711|gb|EEX03011.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332727632|gb|EGJ59051.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332733498|gb|EGJ64668.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332735653|gb|EGJ66698.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
          Length = 631

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|158333601|ref|YP_001514773.1| chaperone ClpB [Acaryochloris marina MBIC11017]
 gi|158303842|gb|ABW25459.1| chaperone ClpB [Acaryochloris marina MBIC11017]
          Length = 900

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ+DA  AV+ A+R      +  A ++D   P  + + +GPTGVGKT +
Sbjct: 574 QLEDHLHERVIGQEDAVEAVSAAIR------RARAGMKDPNRPIGSFMFLGPTGVGKTEL 627

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQII 103
           +R LA+         I+++++++ E   V R V    
Sbjct: 628 ARALAQFLFDTEDAIIRIDMSEYMEKHAVSRLVGASP 664


>gi|119714708|ref|YP_921673.1| Mername-AA223 peptidase [Nocardioides sp. JS614]
 gi|119535369|gb|ABL79986.1| membrane protease FtsH catalytic subunit [Nocardioides sp. JS614]
          Length = 681

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 25/100 (25%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           EI   L      Q+ AK     A                  +PK +LL GP G GKT ++
Sbjct: 177 EIKEFL------QEPAKFQAVGA-----------------KIPKGVLLYGPPGTGKTLLA 213

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 214 RAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|319940220|ref|ZP_08014573.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
 gi|319810691|gb|EFW07021.1| cell division protein FtsH [Streptococcus anginosus 1_2_62CV]
          Length = 656

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +E +      + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT
Sbjct: 178 TNKEDIKVRFSDVAGAEEEKQEL-VEVVEFLKDPKRYTKLGARI-PAGVLLEGPPGTGKT 235

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +++ +A  AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 236 LLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis]
          Length = 640

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   L++  +   L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 198 DVKGVDEAKSELEEIVAYLKDPHKFTSLGGKL-----PKGVLLVGPPGTGKTMLARAIAG 252

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF     ++F E+ +VG    ++ RDL   A   
Sbjct: 253 EAGVPFFYTSGSEFEEM-FVGVGARRV-RDLFAAAKKN 288


>gi|282897599|ref|ZP_06305599.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281197522|gb|EFA72418.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 635

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       Q P         +PK +LLVGP G GKT +++ +A 
Sbjct: 184 DDVAGITEAKEELQEVVTF----LQQPEKFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 239

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 240 EASVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIIFIDEIDAV 288


>gi|257454689|ref|ZP_05619945.1| cell division protein FtsH [Enhydrobacter aerosaccus SK60]
 gi|257447999|gb|EEV22986.1| cell division protein FtsH [Enhydrobacter aerosaccus SK60]
          Length = 640

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V      LR+  +  +L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 165 DVAGCDEAKQEVTEIVDFLRDPEKFTKLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 219

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 220 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 268


>gi|326202847|ref|ZP_08192714.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
 gi|325986924|gb|EGD47753.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM
           2782]
          Length = 619

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILL 58
           K     +  +        + G  + K  +A  +   +   +  +L A +     PK +LL
Sbjct: 148 KSRAKMTVDDKKKITFENVAGADEEKEELAEIVEFLKAPKKFVELGARI-----PKGVLL 202

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT +++ ++  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 203 VGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 255


>gi|241896601|ref|ZP_04783897.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
 gi|241870082|gb|EER73833.1| M41 family endopeptidase FtsH [Weissella paramesenteroides ATCC
           33313]
          Length = 689

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 196 DVAGAEEEKQELVEVVEFLKDPKKFLKLGARI-----PSGVLLEGPPGTGKTLLAKAVAG 250

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 251 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA 283


>gi|229496088|ref|ZP_04389810.1| cell division protein FtsH [Porphyromonas endodontalis ATCC 35406]
 gi|229316984|gb|EEN82895.1| cell division protein FtsH [Porphyromonas endodontalis ATCC 35406]
          Length = 680

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK+ +   + +  +       L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 193 KDVAGLHEAKQEIEEIV-HFLKDPSKYTALGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 250

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 251 HVPFFSMSGSDFVEM-FVGVGASRV-RDLFAQA 281


>gi|215408587|emb|CAR31143.1| HflB protein [Candidatus Phytoplasma pyri]
          Length = 176

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++ K  ++  L +  ++ Q    +   + PK +LL GP G GKT +++ LA  A
Sbjct: 28  KDVAGNKEEKEEMSE-LIDFLKQPQKYETIGAAI-PKGVLLEGPPGTGKTLLAKALAGEA 85

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             PF     ++F E+ YVG    +I R L   A   
Sbjct: 86  NVPFFAASGSEFVEM-YVGVGASRI-RTLFKEAKYN 119


>gi|149410206|ref|XP_001506217.1| PREDICTED: similar to Fidgetin-like 1 [Ornithorhynchus anatinus]
          Length = 731

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK A+   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 458 DDIAGVEFAKAAIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 515

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 516 GATFFSISASSLT-SKWVGEG-EKMVRALFAVAKCQQ 550


>gi|332029720|gb|EGI69599.1| Spastin [Acromyrmex echinatior]
          Length = 717

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 443 EDIAGQETAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATQC 500

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 501 NATFFSISAASLT-SKYVGEG-EKLVRALFAIA 531


>gi|315222831|ref|ZP_07864716.1| ATP-dependent metallopeptidase HflB [Streptococcus anginosus F0211]
 gi|315188067|gb|EFU21797.1| ATP-dependent metallopeptidase HflB [Streptococcus anginosus F0211]
          Length = 656

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +E +      + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT
Sbjct: 178 TNKEDIKVRFSDVAGAEEEKQEL-VEVVEFLKDPKRYTKLGARI-PAGVLLEGPPGTGKT 235

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +++ +A  AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 236 LLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|311108148|ref|YP_003981001.1| cell division protease FtsH [Achromobacter xylosoxidans A8]
 gi|310762837|gb|ADP18286.1| cell division protease FtsH [Achromobacter xylosoxidans A8]
          Length = 628

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|306430689|emb|CBJ17091.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430699|emb|CBJ17096.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|285025947|dbj|BAI67908.1| ClpB protein [Acetobacter pasteurianus]
          Length = 871

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 566 MEDELRKSVVGQEQALKAVSDAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         +++++++F E   V R
Sbjct: 620 KALARFLFDDDKALLRIDMSEFMEKHAVAR 649


>gi|294678922|ref|YP_003579537.1| chaperone ClpB [Rhodobacter capsulatus SB 1003]
 gi|294477742|gb|ADE87130.1| chaperone ClpB [Rhodobacter capsulatus SB 1003]
          Length = 871

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ  A  AVA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 559 KMEEELHKRVIGQDAAITAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ +A       A  +++++++F E   V R
Sbjct: 613 TKAVANYLFDDDAAMVRIDMSEFMEKHSVSR 643


>gi|281355949|ref|ZP_06242442.1| ATP-dependent metalloprotease FtsH [Victivallis vadensis ATCC
           BAA-548]
 gi|281317318|gb|EFB01339.1| ATP-dependent metalloprotease FtsH [Victivallis vadensis ATCC
           BAA-548]
          Length = 703

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P E+  + D  I G  +AK  ++  +   + +  L   L    +PK  LL G  G GKT 
Sbjct: 223 PDELHVKFDD-IAGADEAKEEISEIVE--YLKDPLRFQLVGGQIPKGCLLTGDPGTGKTM 279

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +++ +A  AG PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 280 LAKAVACEAGVPFFSISGSDFVEM-FVGVGASRV-RDMFEQA 319


>gi|282601158|ref|ZP_05980957.2| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
 gi|282570064|gb|EFB75599.1| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
          Length = 750

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 20/101 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ +A  AVA A+    +R +  ADL     P + + VGPTGVGKT + +
Sbjct: 454 LEEALKAHIIGQDEAVHAVAGAI----KRAR--ADLSGRHRPASFIFVGPTGVGKTELVK 507

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +LA        P I ++++++ E            GYVG +
Sbjct: 508 QLANQLFDTVDPLISIDMSEYMEKYAVSRLIGSPPGYVGYD 548



 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L PE  GR    +    L++ +   I     + ++ +YK  +   GI L + + ++ A+ 
Sbjct: 642 LRPEFIGRVDEIITFHPLSQENLEKIA----ALMLDEYKPGLTNHGITLTYDQPALAAIV 697

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
                   +    GAR L+  + + +ED    A
Sbjct: 698 AQ------SSTKYGARELRRTIRKAVEDPVAEA 724


>gi|261400134|ref|ZP_05986259.1| ATP-dependent metalloprotease FtsH [Neisseria lactamica ATCC 23970]
 gi|269210129|gb|EEZ76584.1| ATP-dependent metalloprotease FtsH [Neisseria lactamica ATCC 23970]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|225867632|ref|YP_002743580.1| cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700908|emb|CAW97578.1| putative cell division protease FtsH [Streptococcus equi subsp.
           zooepidemicus]
          Length = 657

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|169632638|ref|YP_001706374.1| cell division protein [Acinetobacter baumannii SDF]
 gi|169151430|emb|CAP00165.1| cell division protein [Acinetobacter baumannii]
          Length = 631

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 248


>gi|126695586|ref|YP_001090472.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
 gi|126542629|gb|ABO16871.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301]
          Length = 617

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|121634591|ref|YP_974836.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis FAM18]
 gi|120866297|emb|CAM10038.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis FAM18]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|58617205|ref|YP_196404.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
 gi|58416817|emb|CAI27930.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Gardel]
          Length = 764

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L ++I GQ  A  ++  +++         A LRD   P  + L  GPTGVGKT 
Sbjct: 461 KNLEKNLKQHIFGQDFAISSLVDSIK------IAKAGLRDHRKPLASYLFTGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRD 105
           ++++LA   G   I+ +++++ E            GYVG +   ++ D
Sbjct: 515 LAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTD 562


>gi|33592217|ref|NP_879861.1| cell division protein [Bordetella pertussis Tohama I]
 gi|33571862|emb|CAE41376.1| cell division protein [Bordetella pertussis Tohama I]
 gi|332381634|gb|AEE66481.1| cell division protein [Bordetella pertussis CS]
          Length = 628

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|33600445|ref|NP_888005.1| cell division protein [Bordetella bronchiseptica RB50]
 gi|33568044|emb|CAE31957.1| cell division protein [Bordetella bronchiseptica RB50]
          Length = 628

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|331007334|ref|ZP_08330530.1| Cell division protein FtsH [gamma proteobacterium IMCC1989]
 gi|330418850|gb|EGG93320.1| Cell division protein FtsH [gamma proteobacterium IMCC1989]
          Length = 643

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  + Q+L   +     P+ +L+ G  G GKT ++R +A 
Sbjct: 158 DVAGVDEAKEEVQEIVEFLQDPAKFQRLGGKI-----PRGVLMAGQPGTGKTLLARAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKKH 248


>gi|323358231|ref|YP_004224627.1| ATPase [Microbacterium testaceum StLB037]
 gi|323274602|dbj|BAJ74747.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 735

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+DA +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 417 LERELGKRLIGQKDAVKAVSDAV-----RRSRAGISDPNRPVGSFLFLGPTGVGKTELAK 471

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 472 SLADFLFDDEHAMVRIDMSEYGEKHSVSRLVGAPPGYVGYEAGGQLTEAVRRR 524


>gi|315638250|ref|ZP_07893432.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
 gi|315481786|gb|EFU72408.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21]
          Length = 530

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 28/235 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+N  + ++         MPK +L++GP GVGKT I++ +A
Sbjct: 145 NDVAGVNEVKMELNELVDFLKNPQKYKEFG-----VKMPKGVLMIGPPGVGKTLIAKAVA 199

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             AG PF     + F EI YVG     V ++      +A +I+     D V + +  ++ 
Sbjct: 200 GEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSRAKMMAPSIIFIDEIDAVGKARNELSN 258

Query: 131 EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
            ER      +L  + G    S        N  E+  + L      D+ I + + D     
Sbjct: 259 GERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDEALLRSGRFDRRIFLSLPDFKDRF 318

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
              +I        ++L E  +K+        +   V +     +R  SD + D D
Sbjct: 319 KILEIYMKNKKNQVDL-EKIAKLSVGFSGAGLETLVNEAAINALRRGSDLVEDND 372


>gi|307317005|ref|ZP_07596446.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           meliloti AK83]
 gi|306897093|gb|EFN27838.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           meliloti AK83]
          Length = 838

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 466 LEQELRSVVYGQDLAIEALASSIK------LARAGLREPNKPIGCYVFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 KQLATSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|296313875|ref|ZP_06863816.1| ATP-dependent metalloprotease FtsH [Neisseria polysaccharea ATCC
           43768]
 gi|296839604|gb|EFH23542.1| ATP-dependent metalloprotease FtsH [Neisseria polysaccharea ATCC
           43768]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|269139552|ref|YP_003296253.1| ATP-dependent Clp protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|267985213|gb|ACY85042.1| ATP-dependent Clp protease ATP-binding subunit [Edwardsiella tarda
           EIB202]
 gi|304559440|gb|ADM42104.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Edwardsiella
           tarda FL6-60]
          Length = 764

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ  A  A+  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 459 DRLRMLVFGQDKAISALTEAIK-----MSRAGLNQDHRPVGSFLFAGPTGVGKTEVTVQL 513

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           AR    P ++ +++++ E            GYVG +   ++ D V  + +
Sbjct: 514 ARALDIPLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKSPH 563


>gi|253681305|ref|ZP_04862103.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
 gi|253562543|gb|EES91994.1| cell division protease FtsH [Clostridium botulinum D str. 1873]
          Length = 657

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K     +   L+   +   + A +     PK ILLVGP G GKT +++ +A
Sbjct: 162 KEVAGADEEKAELEEIVDFLKAPNKYLDMGARI-----PKGILLVGPPGTGKTLLAKAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 217 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 253


>gi|251777715|ref|ZP_04820635.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082030|gb|EES47920.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 698

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + GQ++AK ++   + +     +   ++  +L PK  LLVGP G GKT I++ +A  A
Sbjct: 170 DDVAGQEEAKESLKE-VIDFLNCPKRYTEIGAKL-PKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             PF  +  + F E+ +VG    ++ R+L   A+
Sbjct: 228 KVPFFSLSGSSFVEM-FVGVGASRV-RELFKEAV 259


>gi|153952493|ref|YP_001397916.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939939|gb|ABS44680.1| putative cell division protein FtsH [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 538

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-RE 124
           I++ +A  AG PF     + F EI YVG     V ++      +A +IV     D   + 
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRVRELFSKAKMMAPSIVFIDEIDAAGKA 259

Query: 125 QASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
           +  ++  ER      +L  + G    S        N  E+    L      D+ I + + 
Sbjct: 260 RGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLP 319

Query: 171 DTSSDISNFDIPGGASVGILNLSEL 195
           D    +   +I        +NL+++
Sbjct: 320 DFKDRLKILEIYMKDKNNNVNLNKI 344


>gi|148378403|ref|YP_001252944.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|148287887|emb|CAL81953.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
          Length = 576

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|33596682|ref|NP_884325.1| cell division protein [Bordetella parapertussis 12822]
 gi|33573383|emb|CAE37367.1| cell division protein [Bordetella parapertussis]
          Length = 628

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVQELVDFLRDPSKFQKLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|325123185|gb|ADY82708.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 598

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 125 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 179

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 180 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 215


>gi|255520324|ref|ZP_05387561.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
           J1-175]
          Length = 819

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|157737859|ref|YP_001490543.1| ATP-dependent Clp protease, ATP-binding subunit [Arcobacter
           butzleri RM4018]
 gi|157699713|gb|ABV67873.1| ATP-dependent Clp protease, ATP-binding subunit [Arcobacter
           butzleri RM4018]
          Length = 859

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A +A++ A+    +R              + L +GPTGVGKT  +
Sbjct: 565 KVEEVLKQDVIGQDEAIKAISRAI----KR-NKAGLSETSRPIGSFLFLGPTGVGKTESA 619

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA+     P   I+ +++++ E   V R V      +       + E+ R +
Sbjct: 620 KTLAKFLFDDPKSLIRFDMSEYMEKHAVSRLVGAAPGYVGYEEGGQLTEAVRRK 673


>gi|116871616|ref|YP_848397.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740494|emb|CAK19614.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 820

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 36.4 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTSQLTKRLAERDIHVKLTEGAKAKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
             +      + GAR L+  +++ +ED+ 
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDML 776


>gi|57239194|ref|YP_180330.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579152|ref|YP_197364.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161273|emb|CAH58194.1| ATP-dependent Clp protease, ATP-binding subunit [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417778|emb|CAI26982.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 764

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L ++I GQ  A  ++  +++         A LRD   P  + L  GPTGVGKT 
Sbjct: 461 KNLEKNLKQHIFGQDFAISSLVDSIK------IAKAGLRDHRKPLASYLFTGPTGVGKTE 514

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRD 105
           ++++LA   G   I+ +++++ E            GYVG +   ++ D
Sbjct: 515 LAKQLANHMGMKLIRFDMSEYMESHSISKIIGSPPGYVGYDQGGLLTD 562


>gi|238792420|ref|ZP_04636054.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           intermedia ATCC 29909]
 gi|238728346|gb|EEQ19866.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           intermedia ATCC 29909]
          Length = 758

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 449 RNLSDRLNMLVFGQDKAIDALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|328954667|ref|YP_004372000.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
 gi|328454991|gb|AEB06185.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans
           PW2]
          Length = 736

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +A   +   +R+     + P   R     +P+ +LLVGP G GKT +++ +A 
Sbjct: 237 KDVAGIDEAVEELEE-VRD---YLEDPERYRKLGAKIPRGVLLVGPPGTGKTLLAKAVAG 292

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 293 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKEA 325


>gi|323126274|gb|ADX23571.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 661

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|254670624|emb|CBA06619.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|238753482|ref|ZP_04614845.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           ruckeri ATCC 29473]
 gi|238708435|gb|EEQ00790.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           ruckeri ATCC 29473]
          Length = 758

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + S L+  + GQ  A  A+  A++             +     + L  GPTGVGKT +
Sbjct: 449 RNLSSRLNMLVFGQDRAIEALTEAIK-----MSRAGLGHENKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|115642732|ref|XP_001184600.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
 gi|115661295|ref|XP_001196555.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
          Length = 221

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+ +   +     R  +   LR    PK +LL GP G GKT I + +A  +
Sbjct: 56  DDIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGP--PKGLLLFGPPGTGKTLIGKCIASQS 113

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 114 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCHQ 148


>gi|59800826|ref|YP_207538.1| hypothetical protein NGO0382 [Neisseria gonorrhoeae FA 1090]
 gi|240080281|ref|ZP_04724824.1| hypothetical protein NgonF_03082 [Neisseria gonorrhoeae FA19]
 gi|240112493|ref|ZP_04726983.1| hypothetical protein NgonM_02731 [Neisseria gonorrhoeae MS11]
 gi|240123074|ref|ZP_04736030.1| hypothetical protein NgonP_03881 [Neisseria gonorrhoeae PID332]
 gi|240127778|ref|ZP_04740439.1| hypothetical protein NgonS_03926 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493295|ref|ZP_05106466.1| cell division protein FtsH [Neisseria gonorrhoeae 1291]
 gi|268596429|ref|ZP_06130596.1| cell division protein ftsH [Neisseria gonorrhoeae FA19]
 gi|268598560|ref|ZP_06132727.1| cell division protein FtsH [Neisseria gonorrhoeae MS11]
 gi|268681700|ref|ZP_06148562.1| cell division protein FtsH [Neisseria gonorrhoeae PID332]
 gi|268686170|ref|ZP_06153032.1| cell division protein FtsH [Neisseria gonorrhoeae SK-93-1035]
 gi|293399469|ref|ZP_06643622.1| cell division protease FtsH [Neisseria gonorrhoeae F62]
 gi|59717721|gb|AAW89126.1| putative ATP binding protein, cell division protein [Neisseria
           gonorrhoeae FA 1090]
 gi|226512335|gb|EEH61680.1| cell division protein FtsH [Neisseria gonorrhoeae 1291]
 gi|268550217|gb|EEZ45236.1| cell division protein ftsH [Neisseria gonorrhoeae FA19]
 gi|268582691|gb|EEZ47367.1| cell division protein FtsH [Neisseria gonorrhoeae MS11]
 gi|268621984|gb|EEZ54384.1| cell division protein FtsH [Neisseria gonorrhoeae PID332]
 gi|268626454|gb|EEZ58854.1| cell division protein FtsH [Neisseria gonorrhoeae SK-93-1035]
 gi|291610038|gb|EFF39160.1| cell division protease FtsH [Neisseria gonorrhoeae F62]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|218767916|ref|YP_002342428.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis Z2491]
 gi|304387891|ref|ZP_07370065.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ATCC
           13091]
 gi|121051924|emb|CAM08230.1| putative ATP-dependent zinc metallopeptidase [Neisseria
           meningitidis Z2491]
 gi|261392835|emb|CAX50416.1| cell division protease FtsH [Neisseria meningitidis 8013]
 gi|304338156|gb|EFM04292.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ATCC
           13091]
 gi|308388984|gb|ADO31304.1| cell division protein FtsH [Neisseria meningitidis alpha710]
 gi|325127925|gb|EGC50828.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis N1568]
 gi|325134057|gb|EGC56712.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M13399]
 gi|325144165|gb|EGC66472.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240013]
 gi|325203883|gb|ADY99336.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240355]
 gi|325206361|gb|ADZ01814.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M04-240196]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|315637650|ref|ZP_07892856.1| chaperone protein ClpB [Arcobacter butzleri JV22]
 gi|315478104|gb|EFU68831.1| chaperone protein ClpB [Arcobacter butzleri JV22]
          Length = 859

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A +A++ A+    +R              + L +GPTGVGKT  +
Sbjct: 565 KVEEVLKQDVIGQDEAIKAISRAI----KR-NKAGLSETSRPIGSFLFLGPTGVGKTESA 619

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA+     P   I+ +++++ E   V R V      +       + E+ R +
Sbjct: 620 KTLAKFLFDDPKSLIRFDMSEYMEKHAVSRLVGAAPGYVGYEEGGQLTEAVRRK 673


>gi|251793445|ref|YP_003008174.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700]
 gi|247534841|gb|ACS98087.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|268680245|ref|YP_003304676.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618276|gb|ACZ12641.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 732

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   I GQ  A  A+  A+    +R +  A L +   P  + L  GPTGVGKT ++
Sbjct: 439 LEAHLKAKIFGQDRAIEALCKAI----KRSR--AGLGNPTSPIGSFLFAGPTGVGKTEVA 492

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++LA   G  F + +++++ E            GYVG +    + + +      
Sbjct: 493 KQLAYELGVHFERYDMSEYMEKHTVSRLIGAPPGYVGYDEGGQLSEAIKKHPYC 546


>gi|190571197|ref|YP_001975555.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018597|ref|ZP_03334405.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357469|emb|CAQ54903.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995548|gb|EEB56188.1| cell division protein FtsH [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 609

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +    +RQ+    +    +PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIVDFLKQRQKFQ--VLGGKIPKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|187776991|ref|ZP_02993464.1| hypothetical protein CLOSPO_00536 [Clostridium sporogenes ATCC
           15579]
 gi|187773919|gb|EDU37721.1| hypothetical protein CLOSPO_00536 [Clostridium sporogenes ATCC
           15579]
          Length = 576

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|91794212|ref|YP_563863.1| ATPase AAA-2 [Shewanella denitrificans OS217]
 gi|91716214|gb|ABE56140.1| ATPase AAA-2 [Shewanella denitrificans OS217]
          Length = 862

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMESALHERVIGQSEAVEAVSNAIR------RSRAGLADPQRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA+      A  +++++++F E   V R V
Sbjct: 615 CKSLAKFLFDTEAALVRIDMSEFMEKHSVSRLV 647


>gi|15676696|ref|NP_273840.1| cell division protein FtsH [Neisseria meningitidis MC58]
 gi|254804676|ref|YP_003082897.1| cell division protein [Neisseria meningitidis alpha14]
 gi|7226031|gb|AAF41211.1| cell division protein FtsH [Neisseria meningitidis MC58]
 gi|254668218|emb|CBA04994.1| cell division protein [Neisseria meningitidis alpha14]
 gi|316983789|gb|EFV62770.1| cell division protease ftsH [Neisseria meningitidis H44/76]
 gi|325129970|gb|EGC52769.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           OX99.30304]
 gi|325140049|gb|EGC62578.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis CU385]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|15965240|ref|NP_385593.1| ATP-dependent Clp protease ATP-binding subunit protein
           [Sinorhizobium meliloti 1021]
 gi|307309263|ref|ZP_07588931.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           meliloti BL225C]
 gi|15074420|emb|CAC46066.1| Probable ATP-dependent CLP protease ATP-binding subunit
           [Sinorhizobium meliloti 1021]
 gi|306900264|gb|EFN30881.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium
           meliloti BL225C]
          Length = 838

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 466 LEQELRSVVYGQDLAIEALASSIK------LARAGLREPNKPIGCYVFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 KQLATSLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|328776099|ref|XP_393770.4| PREDICTED: paraplegin-like [Apis mellifera]
          Length = 725

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 103/274 (37%), Gaps = 42/274 (15%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  V   +   +N  R  +L A      +PK  LL+GP G GKT +++ +A
Sbjct: 292 KDVAGLKEAKIEVMEFVDYLKNPERYTKLGAK-----VPKGALLLGPPGCGKTLLAKAVA 346

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASINAE 131
             +  PF+ +  ++FTE+  G     V  +  +    A +I+     D + ++++    E
Sbjct: 347 TESNVPFLSMNGSEFTELIGGLGAARVRDLFTEAKKRAPSIIYIDEIDAIGKKRSDSFTE 406

Query: 132 ------ERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 ER L+ L+ +             A++N  EV  K L      D+ I I++    
Sbjct: 407 FTNSESERTLNQLLVEMDGMIAVKDIIILASTNRAEVLDKALLRCGRFDRHILIDLPTLE 466

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                F+                  ++   +  K    +    P     E   + +   +
Sbjct: 467 ERGQIFEYH-------------LQSLLLKDKPIKYSKYLAHLTPGFSGAEIANVCNEAAL 513

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267
           H  S + ++      +   DKI+         ++
Sbjct: 514 HAASEKKIKVDDNDLMYAVDKILGGSIKKSSTLT 547


>gi|325198016|gb|ADY93472.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis G2136]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|325131969|gb|EGC54668.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M6190]
 gi|325135980|gb|EGC58590.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis M0579]
 gi|325137800|gb|EGC60375.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis ES14902]
 gi|325202407|gb|ADY97861.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           M01-240149]
 gi|325207841|gb|ADZ03293.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis
           NZ-05/33]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|312130473|ref|YP_003997813.1| membrane protease ftsh catalytic subunit [Leadbetterella byssophila
           DSM 17132]
 gi|311907019|gb|ADQ17460.1| membrane protease FtsH catalytic subunit [Leadbetterella byssophila
           DSM 17132]
          Length = 658

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    +  +         +PK  LLVGP G GKT +++ +A  A 
Sbjct: 202 DVAGLDEAKEELTEIVEFLKKPTKYTELGG--KIPKGALLVGPPGTGKTLMAKAVAGEAS 259

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 260 VPFFSLSGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDEIDAV 305


>gi|303249374|ref|ZP_07335600.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           fructosovorans JJ]
 gi|302489212|gb|EFL49177.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           fructosovorans JJ]
          Length = 757

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   I GQ  A  A+A A+       +  A L ++  P    LL GPTGVGKT ++
Sbjct: 442 LEGELKDLIFGQDQAVDAIAKAI------LRSRAGLANDCKPTGSFLLAGPTGVGKTEMA 495

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++LA + G  F++ +++++ E            GYVG     ++ D +      
Sbjct: 496 KQLAAVLGINFVRFDMSEYMEKHAVARLIGSPPGYVGFEQGGLLTDAIRKHPYS 549


>gi|294668968|ref|ZP_06734055.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291309141|gb|EFE50384.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 754

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ  A  A+A A++              +    + L  GPTGVGKT ++R+LA 
Sbjct: 456 LKNMVFGQDAAIDALASAVK-----MSRSGLGSPDRPIGSFLFSGPTGVGKTEVARQLAF 510

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 511 SLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 559


>gi|269468931|gb|EEZ80515.1| ATP-dependent Zn protease [uncultured SUP05 cluster bacterium]
          Length = 641

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L +  +  ++   +     PK +L+VGP G GKT +++ +A
Sbjct: 151 KDVAGVDEAKAEVMELVDFLSDPGKFTKVGGKI-----PKGVLMVGPPGTGKTLLAKAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 GEADVPFFFISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 255


>gi|215408557|emb|CAR31128.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|188578062|ref|YP_001914991.1| ATP-dependent chaperone ClpB [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522514|gb|ACD60459.1| ATP-dependent chaperone ClpB [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 599 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 652

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 653 KALADFLFDSTEAMIRIDMSEFMEKHAVAR 682


>gi|170760038|ref|YP_001785740.1| ATP-dependent metalloprotease [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407027|gb|ACA55438.1| ATP-dependent metalloprotease [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 576

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|170756193|ref|YP_001780055.1| putative cell division protease FtsH-like protein [Clostridium
           botulinum B1 str. Okra]
 gi|169121405|gb|ACA45241.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           B1 str. Okra]
          Length = 578

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|168177746|ref|ZP_02612410.1| ATP-dependent metalloprotease [Clostridium botulinum NCTC 2916]
 gi|226947633|ref|YP_002802724.1| ATP-dependent metalloprotease [Clostridium botulinum A2 str. Kyoto]
 gi|182670641|gb|EDT82615.1| ATP-dependent metalloprotease [Clostridium botulinum NCTC 2916]
 gi|226844425|gb|ACO87091.1| ATP-dependent metalloprotease [Clostridium botulinum A2 str. Kyoto]
          Length = 576

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|161869742|ref|YP_001598909.1| ATP-dependent zinc metallopeptidase [Neisseria meningitidis 053442]
 gi|161595295|gb|ABX72955.1| ATP-dependent zinc metallopeptidase [Neisseria meningitidis 053442]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|153941523|ref|YP_001389771.1| putative cell division protease FtsH-like protein [Clostridium
           botulinum F str. Langeland]
 gi|152937419|gb|ABS42917.1| cell division protease FtsH homolog [Clostridium botulinum F str.
           Langeland]
 gi|295317860|gb|ADF98237.1| cell division protease FtsH-like protein [Clostridium botulinum F
           str. 230613]
          Length = 578

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSVKIED 380


>gi|88802372|ref|ZP_01117899.1| putative transmembrane AAA-metalloprotease FtsH [Polaribacter
           irgensii 23-P]
 gi|88781230|gb|EAR12408.1| putative transmembrane AAA-metalloprotease FtsH [Polaribacter
           irgensii 23-P]
          Length = 663

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  V      L+N  +   L   +     PK  LLVGP G GKT +++ +A  
Sbjct: 197 VAGLEGAKEEVQEIVDFLKNPEKYTSLGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 251

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 252 AEVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 283


>gi|313668722|ref|YP_004049006.1| ATP-dependent zinc metallopeptidase [Neisseria lactamica ST-640]
 gi|313006184|emb|CBN87646.1| putative ATP-dependent zinc metallopeptidase [Neisseria lactamica
           020-06]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|309379376|emb|CBX21943.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|300865379|ref|ZP_07110188.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
 gi|300336614|emb|CBN55338.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506]
          Length = 623

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 169 DVAGVEEAKTELVEIVDFLKTPDRFTAIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 224 EAGVPFFSISGSEFVEL-FVGVGSARV-RDLFEQAKKQ 259


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 9   PREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P EI       + G  +AK   + V   L++  +   L   L     PK +LLVGP G G
Sbjct: 207 PEEINVTF-EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-----PKGVLLVGPPGTG 260

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT ++R +A  A  PF      +F E+  VG+   ++ RDL   A
Sbjct: 261 KTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARRV-RDLFKAA 303


>gi|116750618|ref|YP_847305.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans
           MPOB]
 gi|310946766|sp|A0LN68|FTSH_SYNFM RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116699682|gb|ABK18870.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Syntrophobacter fumaroxidans MPOB]
          Length = 647

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +EI    D  + G  +AK     +   L++  + Q+L   +     PK +LLVG  G GK
Sbjct: 180 KEITITFDD-VAGIDEAKGELEEIVQFLKDPGKFQRLGGRI-----PKGVLLVGAPGTGK 233

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           T +++ +A  AG PF  +  ++F E+ +VG    ++ RDL   A + 
Sbjct: 234 TLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAARV-RDLFGQAKDH 278


>gi|58580960|ref|YP_199976.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425554|gb|AAW74591.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 898

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 599 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 652

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 653 KALADFLFDSTEAMIRIDMSEFMEKHAVAR 682


>gi|332530845|ref|ZP_08406771.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hylemonella
           gracilis ATCC 19624]
 gi|332039757|gb|EGI76157.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hylemonella
           gracilis ATCC 19624]
          Length = 780

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 96/260 (36%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A  A+A A++            + +      L  GPTGVGKT  ++
Sbjct: 460 IERDLKSVVFGQDKALEALASAVK-----MARSGLGKPDKPIGAFLFSGPTGVGKTEAAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   ++ + V    + V     D
Sbjct: 515 QLAYILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHCVL--LLD 572

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 573 EI-EKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIVMTTNAGAETMNKAT 624

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  ++   
Sbjct: 625 IGFTNPRAAGDEMGDIKRLFTPEFRNRLDAIVS--FKPLDEQIILRVVDKFLLQLETQLA 682

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 683 EKKVEVTFSDALRKHLAKKG 702



 Score = 38.0 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE + R    V  K L++     ++       +LQ +  +  + + + F++     LA
Sbjct: 644 FTPEFRNRLDAIVSFKPLDEQIILRVVDK----FLLQLETQLAEKKVEVTFSDALRKHLA 699

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL-----EDISFSASDLQEKTVVIDAEYVRLHIGDF 426
               +       +GAR +Q +++  +     +++ F    +    + +D E V+   G+ 
Sbjct: 700 KKGFD-----PLMGARPMQRLIQDTIRRALADELLFGRL-VDGGRLSVDVEVVKDEKGED 753

Query: 427 PSETDM 432
            ++  +
Sbjct: 754 KTDVKL 759


>gi|329895231|ref|ZP_08270895.1| ClpB protein [gamma proteobacterium IMCC3088]
 gi|328922469|gb|EGG29811.1| ClpB protein [gamma proteobacterium IMCC3088]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDALHDRVVGQDEAVRAVSDAVR------RARAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KSLANFLFDSEQAMVRIDMSEFMEKHSVAR 645


>gi|319775209|ref|YP_004137697.1| protein disaggregation chaperone [Haemophilus influenzae F3047]
 gi|317449800|emb|CBY86008.1| protein disaggregation chaperone [Haemophilus influenzae F3047]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647



 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 41/274 (14%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           ++D +  I +F   G   VG   L +  +K +       +R+ + +    + +    RL+
Sbjct: 591 LSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSE---FMEKHSVSRLV 647

Query: 229 ---------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREG 270
                    +      ++++    Y ++ LDE +K         +   D G         
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRR-RPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRT 706

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330
           V      ++  S++ +     N D                   PE   R    V    L 
Sbjct: 707 VDFRNTVVIMTSNLGSDLIQGNKDESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLG 766

Query: 331 KSDFRLILTDTESNLILQYKEL---MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
           K + R I +       +Q + L   M+T G  L FT+D +D + +V  +        GAR
Sbjct: 767 KENIRAIAS-------IQLERLAKRMETRGYELVFTDDLLDFIGEVGYD-----PIYGAR 814

Query: 388 RLQT----VMERVLEDISFSASDLQEKTVVIDAE 417
            L+      +E  L     S + L  K V ID  
Sbjct: 815 PLKRAIQQEIENSLAQQILSGALLPGKFVTIDYA 848


>gi|306430713|emb|CBJ17103.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430721|emb|CBJ17107.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430725|emb|CBJ17109.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|301169578|emb|CBW29179.1| protein disaggregation chaperone [Haemophilus influenzae 10810]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|254853501|ref|ZP_05242849.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
 gi|258606873|gb|EEW19481.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
          Length = 821

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|146308630|ref|YP_001189095.1| membrane protease FtsH catalytic subunit [Pseudomonas mendocina
           ymp]
 gi|145576831|gb|ABP86363.1| membrane protease FtsH catalytic subunit [Pseudomonas mendocina
           ymp]
          Length = 640

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVSELVEFLRDPGKFQRLGGRI-----PRGVLMVGSPGTGKTLLAKAVAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFDQAKKH 248


>gi|123967784|ref|YP_001008642.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
 gi|123197894|gb|ABM69535.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601]
          Length = 617

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|148253363|ref|YP_001237948.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1]
 gi|146405536|gb|ABQ34042.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1]
          Length = 618

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   ++   +  +    L   + PK ILLVGP G GKT ++R +A  AG
Sbjct: 163 DVAGVDEAKFELQEVVQ-FLKDPKSYGRLGAHV-PKGILLVGPPGTGKTLLARAVAGEAG 220

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 VAFFSISGSEFVEM-FVGVGAARV-RDLFEQA 250


>gi|46906465|ref|YP_012854.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093952|ref|ZP_00231688.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
 gi|226222861|ref|YP_002756968.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           Clip81459]
 gi|254825724|ref|ZP_05230725.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
 gi|254932450|ref|ZP_05265809.1| ClpC ATPase [Listeria monocytogenes HPB2262]
 gi|300764643|ref|ZP_07074635.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
 gi|46879729|gb|AAT03031.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017673|gb|EAL08470.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 4b H7858]
 gi|225875323|emb|CAS04020.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584007|gb|EFF96039.1| ClpC ATPase [Listeria monocytogenes HPB2262]
 gi|293594968|gb|EFG02729.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
 gi|300514750|gb|EFK41805.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
 gi|328467843|gb|EGF38883.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes 1816]
 gi|332310643|gb|EGJ23738.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
          Length = 820

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|145628239|ref|ZP_01784040.1| ClpB [Haemophilus influenzae 22.1-21]
 gi|145638337|ref|ZP_01793947.1| ClpB [Haemophilus influenzae PittII]
 gi|144980014|gb|EDJ89673.1| ClpB [Haemophilus influenzae 22.1-21]
 gi|145272666|gb|EDK12573.1| ClpB [Haemophilus influenzae PittII]
 gi|309751479|gb|ADO81463.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae
           R2866]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|332638690|ref|ZP_08417553.1| FtsH-2 peptidase [Weissella cibaria KACC 11862]
          Length = 687

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +  +L A +     P  +LL GP G GKT ++R +A 
Sbjct: 194 DVAGAEEEKQELVEVVEFLKDPKKFLKLGARI-----PSGVLLEGPPGTGKTLLARAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 249 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDNA 281


>gi|303232397|ref|ZP_07319089.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
 gi|302481481|gb|EFL44549.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
          Length = 806

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +A   +   +R+  +  +    L  ++ P+ +LLVG  G GKT +++ +A  A
Sbjct: 310 KDVAGIDEAVEELKE-VRDFLKDPKRYRKLGAKI-PRGVLLVGAPGTGKTLLAKAVAGEA 367

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           G PF  +  + F E+ +VG    ++ RDL   A +
Sbjct: 368 GVPFFSISGSDFVEM-FVGVGASRV-RDLFKQAKH 400


>gi|302421446|ref|XP_003008553.1| paraplegin [Verticillium albo-atrum VaMs.102]
 gi|261351699|gb|EEY14127.1| paraplegin [Verticillium albo-atrum VaMs.102]
          Length = 841

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL----MPKNILLVGPTGVGKTAISRRLA 74
            + G  +AK  +   +        L A  R E     +P+  +L GP G GKT +++  A
Sbjct: 420 DVAGMDEAKAEIMEFV------SFLKAPERFERLGAKIPRGAILSGPPGTGKTLLAKATA 473

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 474 GESGVPFFSVSGSEFVEM-FVGVGSSRV-RDLFASA 507


>gi|219128993|ref|XP_002184684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403793|gb|EEC43743.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 590

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G  +AK+ +   + +  +       L  ++ PK  LL GP G GKT +++ +A  AG 
Sbjct: 116 VAGCDEAKKEIMEFV-DFLKDSDRFTKLGAKI-PKGALLCGPPGTGKTLLAKAVAGEAGV 173

Query: 80  PFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 174 PFYSISGSDFIEM-FVGVGPSRVRDLFSEARANAPCIVFIDEIDAV 218


>gi|157412585|ref|YP_001483451.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
 gi|157387160|gb|ABV49865.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215]
          Length = 617

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 618

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   ++   +  +    L   + PK ILLVGP G GKT ++R +A  AG
Sbjct: 163 DVAGVDEAKFELQEVVQ-FLKDPKSYGRLGAHV-PKGILLVGPPGTGKTLLARAVAGEAG 220

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 VAFFSISGSEFVEM-FVGVGAARV-RDLFEQA 250


>gi|89898058|ref|YP_515168.1| cell division related ATP-dependent zinc proteinase Clp
           [Chlamydophila felis Fe/C-56]
 gi|89331430|dbj|BAE81023.1| cell division related ATP-dependent zinc proteinase Clp
           [Chlamydophila felis Fe/C-56]
          Length = 913

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 427 DVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|329122865|ref|ZP_08251437.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116]
 gi|327472129|gb|EGF17567.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus]
          Length = 628

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK+     +       ++P          PK +++VGP G GKT +++ +A 
Sbjct: 174 NDVAGIDEAKQEFEEFV----SFLKMPQLFTAVGANPPKGVIIVGPPGTGKTLLAKAIAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PFI +  ++F E+ +VG    ++ RDL + A
Sbjct: 230 EAGVPFISISGSEFVEM-FVGIGASRV-RDLFETA 262


>gi|213403322|ref|XP_002172433.1| AFG3-like protein [Schizosaccharomyces japonicus yFS275]
 gi|212000480|gb|EEB06140.1| AFG3-like protein [Schizosaccharomyces japonicus yFS275]
          Length = 747

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +AK  +   +    +  + PA  +     +P+  +L GP G GKT +++  A  
Sbjct: 290 DVAGVDEAKEEIMEFV----KFLKNPAFYERLGAKIPRGAILSGPPGTGKTLLAKATAGE 345

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  V  ++F E+ +VG    ++ RDL  VA
Sbjct: 346 ASVPFFSVSGSEFLEM-FVGVGPSRV-RDLFAVA 377


>gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
 gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
          Length = 727

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  ++     R      + G  + K+ +      L++  + +Q+ + +     PK
Sbjct: 145 MNFGKSKAKMYDNQKRRVRFSDVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PK 199

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 200 GVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|170288157|ref|YP_001738395.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2]
 gi|170175660|gb|ACB08712.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2]
          Length = 610

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + V   L++  +  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 161 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 216 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA 249


>gi|126642712|ref|YP_001085696.1| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|184159244|ref|YP_001847583.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213157619|ref|YP_002320417.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|215482521|ref|YP_002324709.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|301346064|ref|ZP_07226805.1| cell division protein [Acinetobacter baumannii AB056]
 gi|301511492|ref|ZP_07236729.1| cell division protein [Acinetobacter baumannii AB058]
 gi|301595415|ref|ZP_07240423.1| cell division protein [Acinetobacter baumannii AB059]
 gi|183210838|gb|ACC58236.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213056779|gb|ACJ41681.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|213988125|gb|ACJ58424.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|322509158|gb|ADX04612.1| ftsH [Acinetobacter baumannii 1656-2]
 gi|323519186|gb|ADX93567.1| cell division protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 598

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ V   +   ++  + ++L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 125 DVAGCDEAKQEVVEIVDFLKDPAKFKRLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 179

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 180 EAKVPFFSISGSDFVEM-FVGVGASRV-RDMFEQAKRH 215


>gi|332846740|ref|XP_001140249.2| PREDICTED: paraplegin isoform 4 [Pan troglodytes]
          Length = 767

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 281 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 335

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 336 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 388


>gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 628

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G + AK  +   +       + P  +R     +P+ +LLVGP G GKT ++R +A 
Sbjct: 177 DDVAGAEGAKEELQEIVT----FLKDPGRVRRLGAQVPRGVLLVGPPGCGKTLLARAVAG 232

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ R L + A   
Sbjct: 233 EAGVPFFSITGSDFMEM-FVGVGASRV-RSLFEDAKKN 268


>gi|325117039|emb|CBZ52592.1| ATP-dependent chaperone ClpB, related [Neospora caninum Liverpool]
          Length = 970

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ+DA +AVA A+       +  A L  E MP  + L +GPTGVGKT +++ LA
Sbjct: 583 LHSRVIGQEDAVKAVADAM------VRARAGLSREGMPVGSFLFLGPTGVGKTELAKALA 636

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                     I++++++F+E   V R +      +   A   + E+ R  
Sbjct: 637 AEMFHSEKNLIRIDMSEFSEAHSVSRLIGSPPGYVGHEAGGQLTEAVRRR 686


>gi|315638816|ref|ZP_07893988.1| cell division protein FtsH [Campylobacter upsaliensis JV21]
 gi|315481034|gb|EFU71666.1| cell division protein FtsH [Campylobacter upsaliensis JV21]
          Length = 640

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENA- 266

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              +E+      ++     + R  + L+G        +   + L + +    E    +  
Sbjct: 267 --KKEAPAIVFIDEIDAIGKSRAANGLMG--GNDEREQTLNQLLAEMDGFGTESSPVIVL 322

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY--PELMRDESDRLI- 228
            +++            G  +   L  K    GR + +++ ++     P++  +E  RL  
Sbjct: 323 AATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCEILKVHMKDVKISPKVKVEEVGRLTA 382

Query: 229 -----DMDTVHRDSIQMVENYGIVFLDEFD 253
                D+  +  ++  +    G  F+++ D
Sbjct: 383 GLAGADLANIINEAALLAGRDGKKFVEQDD 412


>gi|307721666|ref|YP_003892806.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979759|gb|ADN09794.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sulfurimonas
           autotrophica DSM 16294]
          Length = 725

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ+ A  AV  A++                   + L  GPTGVGKT ++ 
Sbjct: 433 LEDKLRKRVIGQEKAVEAVTKAIK-----ISKAGLTPANKPIASFLFSGPTGVGKTELAI 487

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            L+ + G  F K +++++ E            GYVG     ++ + +      
Sbjct: 488 ALSEVLGINFEKFDMSEYMEKHALSRLVGAPPGYVGYEQGGLLTEAIKKHPYT 540


>gi|284993144|ref|YP_003411699.1| ATP-dependent chaperone ClpB [Geodermatophilus obscurus DSM 43160]
 gi|284066390|gb|ADB77328.1| ATP-dependent chaperone ClpB [Geodermatophilus obscurus DSM 43160]
          Length = 861

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R ++GQ DA RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MEDELGRRVVGQPDAVRAVSDAV-----RRARSGVADPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR----- 123
            LA          +++++++++E   V R V      +   +   + E+ R         
Sbjct: 618 ALAEFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYESGGQLTEAVRRRPYTVVLF 677

Query: 124 ---EQASINAEERILDAL 138
              E+A  +  + +L  L
Sbjct: 678 DEVEKAHQDVFDVLLQVL 695


>gi|157364388|ref|YP_001471155.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
 gi|310946767|sp|A8F7F7|FTSH_THELT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157314992|gb|ABV34091.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO]
          Length = 626

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +A   +    + L++  R  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 162 KDVAGVDEAVEELKETVLFLKDPGRFSKIGARM-----PKGILLVGPPGTGKTLLARAVA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 217 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFNQA 250


>gi|55820115|ref|YP_138557.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55822005|ref|YP_140446.1| cell division protein [Streptococcus thermophilus CNRZ1066]
 gi|55736100|gb|AAV59742.1| cell division protein [Streptococcus thermophilus LMG 18311]
 gi|55737990|gb|AAV61631.1| cell division protein [Streptococcus thermophilus CNRZ1066]
          Length = 655

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 38/240 (15%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F
Sbjct: 199 IVDFLKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDF 253

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL------VGKTA 143
            E+ +VG    ++ R L + A          +  E+A I  +E  +DA+           
Sbjct: 254 VEM-FVGVGASRV-RSLFEDA----------KKAERAIIFIDE--IDAVGRRRGTGMGGG 299

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
                +   + L + +  D   +I +   +++ S+   P     G  +   L  +    G
Sbjct: 300 NDEREQTLNQLLIEMDGFDGNENI-IVIAATNRSDILDPALLRPGRFDRKVLVGRPDVKG 358

Query: 204 RKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYGIVFLDEFD 253
           R+  +++  +     L  D + +++          D++ V  ++  +    G   +D  D
Sbjct: 359 REAILKVHAKN--KPLAEDVNLKVVAQQTPGFVGADLENVLNEAALVAARRGKTKIDASD 416


>gi|319897647|ref|YP_004135844.1| protein disaggregation chaperone [Haemophilus influenzae F3031]
 gi|317433153|emb|CBY81527.1| protein disaggregation chaperone [Haemophilus influenzae F3031]
          Length = 856

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|310657531|ref|YP_003935252.1| cell division protein ftsh [Clostridium sticklandii DSM 519]
 gi|308824309|emb|CBH20347.1| putative cell division protein ftsh [Clostridium sticklandii]
          Length = 645

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 34/265 (12%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLV 107
            +P  ++  GP G GKT +++ +A  AG PF KV  + F E+ YVG   R V ++ +   
Sbjct: 231 RLPNGVIFYGPPGTGKTLMAKAIAGEAGVPFFKVNGSDFVEL-YVGLGARRVRKLYKTAR 289

Query: 108 DVAINIVRESRRDEV---REQASINAEER-----ILDALVGKTATS--------NTREVF 151
             A  IV     D V   R Q    +E+      +L+ L G +           N  +  
Sbjct: 290 KNAPCIVFIDEIDSVGGARGQNRGTSEDDKTLTALLNELDGFSGNEAVITIAATNRLQDL 349

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211
              L      D+++ + + D +  +S  ++        +   ++   V+     KK    
Sbjct: 350 DPALTRPGRFDRQLAVPLPDRNERMSILELY-------VKSKKISESVIIENLAKKTIGF 402

Query: 212 VQKCYPELMRDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
                  LM + + + +    + + +  I       ++  D+ DK +  DS   I    E
Sbjct: 403 SPSELENLMNEAAIKAVINGHEVIEQTDIDEAYLRILIKGDKKDKPLESDSQRKIVAYHE 462

Query: 270 GVQRDL-----LPLVEGSSVSTKYG 289
                +      P++E S + T  G
Sbjct: 463 AGHAIVGHLLGQPVLEVSIIPTTSG 487


>gi|293364098|ref|ZP_06610834.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2]
 gi|292552588|gb|EFF41362.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2]
          Length = 675

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++A    + +   L+N  +     A +     PK ILL GP G GKT +++  A 
Sbjct: 199 DIAGNKEAIEEIKEIVDYLKNPKKYDNSGARM-----PKGILLGGPPGTGKTLLAKATAG 253

Query: 76  LAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ YVG   + V Q+I +    A +I+     D +
Sbjct: 254 EANVPFYFISASNFVEM-YVGLGAKRVRQVINEARKNAPSIIFIDELDAI 302


>gi|86357528|ref|YP_469420.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
 gi|86281630|gb|ABC90693.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium
           etli CFN 42]
          Length = 829

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A++ +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 467 LEQELRSVVYGQDIAIEALSTSIK------LARAGLREPNKPIGAYVFSGPTGVGKTEVA 520

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 521 KQLAASLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 574


>gi|323338197|gb|EGA79430.1| Hsp78p [Saccharomyces cerevisiae Vin13]
          Length = 593

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 280 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 334

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 335 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 387


>gi|301782849|ref|XP_002926846.1| PREDICTED: paraplegin-like [Ailuropoda melanoleuca]
          Length = 743

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 259 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 313

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 314 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 366


>gi|254786020|ref|YP_003073449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Teredinibacter
           turnerae T7901]
 gi|237685501|gb|ACR12765.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Teredinibacter
           turnerae T7901]
          Length = 766

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++S+L+      + GQ++A  A++ A++              +    + L  GPTG
Sbjct: 450 SDKELLSKLEDTLRMTVFGQEEAISAISSAIK-----LNRAGLTNHDKPIGSFLFAGPTG 504

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT + ++LA   G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 505 VGKTELCKQLASAMGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVTKQPH 564

Query: 113 I 113
            
Sbjct: 565 C 565


>gi|308812909|ref|XP_003083761.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116055643|emb|CAL57728.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 610

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + ++          +PK +LLVGP G GKT +++ +A  A
Sbjct: 179 DDVKGVDEAKAELVEIVE--YLKEPERFTKLGGKLPKGLLLVGPPGTGKTMLAKAVAGEA 236

Query: 78  GAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
           G PF     ++F E+ +VG   R V  + +     A  I+     D V
Sbjct: 237 GVPFFYTSGSEFEEM-FVGVGARRVRDLFKAAKQNAPCIIFIDEIDAV 283


>gi|21740068|emb|CAD39050.1| hypothetical protein [Homo sapiens]
          Length = 563

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 112/304 (36%), Gaps = 44/304 (14%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 267 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 324

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 325 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 382

Query: 115 RE-----------SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163
                        S+R +   ++S   +   L  L G T +S  R +          +++
Sbjct: 383 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV------VGATNR 436

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
             +I+ A     +    IP   +       ++   +M   +     +S ++    + + +
Sbjct: 437 PQEIDEAARRRLVKRLYIPLPEASA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSD 490

Query: 224 SDRLIDMDTVHRDS----IQMVENYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLP 277
           +    DM  + R++    I+ ++   I  +  D+   I   D  N     R  V    L 
Sbjct: 491 AFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLE 550

Query: 278 LVEG 281
           L E 
Sbjct: 551 LYEN 554



 Score = 38.4 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 376 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 435

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 436 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 491


>gi|15643346|ref|NP_228390.1| cell division protein FtsH [Thermotoga maritima MSB8]
 gi|81553136|sp|Q9WZ49|FTSH_THEMA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|4981098|gb|AAD35665.1|AE001733_2 cell division protein FtsH [Thermotoga maritima MSB8]
          Length = 610

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + V   L++  +  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 161 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 216 GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA 249


>gi|50084451|ref|YP_045961.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter sp. ADP1]
 gi|49530427|emb|CAG68139.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter sp. ADP1]
          Length = 859

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 559 QMESFLHNRVVGQDEAVIAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          I++++++F E   V R V
Sbjct: 613 TKALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|57506024|ref|ZP_00371947.1| cell division protein FtsH [Campylobacter upsaliensis RM3195]
 gi|57015632|gb|EAL52423.1| cell division protein FtsH [Campylobacter upsaliensis RM3195]
          Length = 640

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENA- 266

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              +E+      ++     + R  + L+G        +   + L + +    E    +  
Sbjct: 267 --KKEAPAIVFIDEIDAIGKSRAANGLMG--GNDEREQTLNQLLAEMDGFGTESSPVIVL 322

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY--PELMRDESDRLI- 228
            +++            G  +   L  K    GR + +++ ++     P++  +E  RL  
Sbjct: 323 AATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCEILKVHMKDVKISPKVKVEEVGRLTA 382

Query: 229 -----DMDTVHRDSIQMVENYGIVFLDEFD 253
                D+  +  ++  +    G  F+++ D
Sbjct: 383 GLAGADLANIINEAALLAGRDGKKFVEQDD 412


>gi|332298105|ref|YP_004440027.1| ATP-dependent chaperone ClpB [Treponema brennaborense DSM 12168]
 gi|332181208|gb|AEE16896.1| ATP-dependent chaperone ClpB [Treponema brennaborense DSM 12168]
          Length = 865

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + +IGQ +A  +VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 567 ELENVLHKRVIGQDEAVNSVADAIR------RNRAGLSDENRPLGSFLFIGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA           +++++++ E            GYVG +
Sbjct: 621 AKTLADFLFNDEKSLTRIDMSEYMEKFSVSRLIGAPPGYVGYD 663


>gi|313611199|gb|EFR86009.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes FSL F2-208]
          Length = 820

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKAKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|294787782|ref|ZP_06753026.1| ATP-dependent metalloprotease FtsH [Simonsiella muelleri ATCC
           29453]
 gi|294484075|gb|EFG31758.1| ATP-dependent metalloprotease FtsH [Simonsiella muelleri ATCC
           29453]
          Length = 656

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|294793817|ref|ZP_06758954.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           3_1_44]
 gi|294455387|gb|EFG23759.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           3_1_44]
          Length = 815

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDEAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|282850309|ref|ZP_06259688.1| negative regulator of genetic competence ClpC/MecB [Veillonella
           parvula ATCC 17745]
 gi|282579802|gb|EFB85206.1| negative regulator of genetic competence ClpC/MecB [Veillonella
           parvula ATCC 17745]
          Length = 815

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDEAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|217965681|ref|YP_002351359.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|290892627|ref|ZP_06555620.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           J2-071]
 gi|217334951|gb|ACK40745.1| negative regulator of genetic competence ClpC/mecB [Listeria
           monocytogenes HCC23]
 gi|290557936|gb|EFD91457.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           J2-071]
 gi|307569771|emb|CAR82950.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes L99]
          Length = 820

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKAKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|205278888|gb|ACI02319.1| AAA ATPase-like protein G8 [Trypanosoma cruzi]
          Length = 395

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG  +AK+ V      L N  +  +L A L     PK  LL G  G GKT +++ +A
Sbjct: 87  EDVIGIPEAKQEVQQYVEFLTNPNKFTRLGARL-----PKGCLLTGEPGTGKTLLAKAVA 141

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF     + F E+  G   + V ++  +    A  IV     D +  +A      
Sbjct: 142 GEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARSSAPAIVFIDEIDAIGSRAGKIGGS 201

Query: 127 ----SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                     ++L  L G           A +N ++   K L      D++++IE+ D +
Sbjct: 202 VSSEENRTINQLLAELDGLNTGTDAIIVIAATNFQDNIDKALLREGRFDRKVNIEMPDKA 261

Query: 174 SDISNF 179
           + +  F
Sbjct: 262 ARVDIF 267


>gi|198434764|ref|XP_002132138.1| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
           [Ciona intestinalis]
          Length = 784

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 27/236 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  +   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 302 KDVAGCEEAKIEILEFV-NFLKNPKKYEELGAKI-PKGAILSGPPGTGKTLLAKATAGEA 359

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             PFI V  ++F E+ +VG     V  +     D A  I+     D +  + S       
Sbjct: 360 SVPFISVSGSEFLEM-FVGVGASRVRDMFTLARDNAPCILFIDEIDAIGRKRSEK----- 413

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
                G    S   +   + L + +  +      V  + ++ S+   P     G  +   
Sbjct: 414 -----GFGGNSEADQTLNQLLVEMDGFNTVGTNVVVLSGTNRSDVLDPALLRPGRFDRQ- 467

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
                +   + +     V      L         D+D +           G    D
Sbjct: 468 -IHVGLPDIKGRSSIFKVH--LKPLK-------TDLDKIALSRKMAARTPGFSGAD 513



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
            +     +   + R+ DM T+ RD+        I+F+DE D I  + S  G G + E  Q
Sbjct: 369 SEFLEMFVGVGASRVRDMFTLARDNA-----PCILFIDEIDAIGRKRSEKGFGGNSEADQ 423

Query: 273 RDLLPLVE-------GSSVSTKYGS--INTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323
                LVE       G++V    G+   +      +  G F       L P+I+GR  + 
Sbjct: 424 TLNQLLVEMDGFNTVGTNVVVLSGTNRSDVLDPALLRPGRFDRQIHVGL-PDIKGRSSIF 482

Query: 324 -VHLKSLNKSDFRLIL 338
            VHLK L K+D   I 
Sbjct: 483 KVHLKPL-KTDLDKIA 497


>gi|188588998|ref|YP_001922412.1| putative cell division protease FtsH [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499279|gb|ACD52415.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 698

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + GQ++AK ++   + +     +   ++  +L PK  LLVGP G GKT I++ +A  A
Sbjct: 170 DDVAGQEEAKESLKE-VIDFLNCPKRYTEIGAKL-PKGALLVGPPGTGKTLIAKAVAGEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
             PF  +  + F E+ +VG    ++ R+L   A+
Sbjct: 228 KVPFFSLSGSSFVEM-FVGVGASRV-RELFKEAV 259


>gi|152002560|dbj|BAF73584.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-W]
          Length = 422

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +  ++   +     PK +LL GP G GKT + + LA 
Sbjct: 181 DVAGLEEEKKEIQELIDFLKHPQKYHKMGFAI-----PKGVLLEGPPGTGKTLLVKALAN 235

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR-ESRRDEVREQASINAEERI 134
               PF  V  ++F E+ YVG    +I RDL   A          DE+    +      I
Sbjct: 236 EVKIPFYAVSGSEFVEV-YVGVGASRI-RDLFQKAKRTTPCIIFIDEIDALGAKRKNNSI 293

Query: 135 LD 136
           ++
Sbjct: 294 IE 295


>gi|157962353|ref|YP_001502387.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           pealeana ATCC 700345]
 gi|157847353|gb|ABV87852.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           pealeana ATCC 700345]
          Length = 752

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   ++ A+     R        +     + L  GPTGVGKT +
Sbjct: 450 KNLERNLKMVVFGQDQAIEGLSSAI-----RLSRSGLGGEHKPVGSFLFAGPTGVGKTEV 504

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 TSQLAKCLSLKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 559


>gi|148658380|ref|YP_001278585.1| ATPase [Roseiflexus sp. RS-1]
 gi|148570490|gb|ABQ92635.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1]
          Length = 871

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEERLHRRVVGQDEAVSAVANAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 619 RALAEFLFDDEQAMIRIDMSEYMEKHTVAR 648


>gi|159903386|ref|YP_001550730.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888562|gb|ABX08776.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 637

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVNEAKQDLEEVVTFLKQPERFTSVGAQI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|119944573|ref|YP_942253.1| ATP-dependent metalloprotease FtsH [Psychromonas ingrahamii 37]
 gi|119863177|gb|ABM02654.1| membrane protease FtsH catalytic subunit [Psychromonas ingrahamii
           37]
          Length = 663

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 156 DVAGCDEAKEDVKELVDYLKDSTKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 259


>gi|94987060|ref|YP_594993.1| ATPases with chaperone activity, ATP-binding subunit [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731309|emb|CAJ54672.1| ATPases with chaperone activity, ATP-binding subunit [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 748

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L  +I GQ +A   V  A+      +      R      + L  GPTGVGKT +
Sbjct: 447 KNLKKDLSSHIYGQNEAIDKVTKAIF-----RSRAGLNRGNRPSGSFLFYGPTGVGKTEL 501

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           ++++A      F++ +++++ E   V R +  
Sbjct: 502 AKQIAEKLNIAFLRFDMSEYMEKHSVARLIGS 533


>gi|16799341|ref|NP_469609.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
 gi|16412693|emb|CAC95497.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
          Length = 820

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ +      K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 36.4 bits (83), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTSQLTKRLAERDIHVKLTEGAKAKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
             +      + GAR L+  +++ +ED+ 
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDML 776


>gi|310792457|gb|EFQ27984.1| ATP-dependent metallopeptidase HflB [Glomerella graminicola M1.001]
          Length = 892

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 36/269 (13%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   R ++L A +     P+  +L GP G GKT +++  A 
Sbjct: 402 DVAGMDEAKAEIMEFVSFLKTPERFERLGAKI-----PRGAILAGPPGTGKTLLAKATAG 456

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS---- 127
            +G PF  V  ++F E+ +VG     V  +       A  I+     D + R +      
Sbjct: 457 ESGVPFFSVSGSEFVEM-FVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGRSRQEGNRM 515

Query: 128 ------INAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      +IL  + G             N  ++  K L      D+ I I+     
Sbjct: 516 GGNDEREATLNQILTEMDGFNTQEQVVVLAGTNRADILDKALMRPGRFDRHIFIDRPTMK 575

Query: 174 SDISNFDIPGGASVGILNLSELFSKVM-----GSGRKKKIRMSVQKCYPELMRDESDRLI 228
                F +     V   ++  L  ++       SG      ++           E+  +I
Sbjct: 576 GRQDIFKVHLAKIVTKEDMDHLTGRLATLTPGFSGADIANAVNEAALVAARANAETVEMI 635

Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
             +      I  +E   +V   E  K VA
Sbjct: 636 HFEQAIERVIGGLERKSLVLNPEEKKTVA 664


>gi|304397052|ref|ZP_07378931.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pantoea sp.
           aB]
 gi|304355201|gb|EFM19569.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pantoea sp.
           aB]
          Length = 758

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L   + GQ  A   +  A++            +D     + L  GPTGVGKT
Sbjct: 447 TLRNLGERLKMLVFGQDKAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|283850232|ref|ZP_06367521.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
 gi|283574258|gb|EFC22229.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
          Length = 691

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +   ++   +  +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 153 EDVAGVDEAKEELTEVVQFLSDPKKFTRLGGRI-----PKGVLLVGSPGTGKTLLARAVA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  ++     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFLQGKKNAPCLIFIDEIDAV 257


>gi|257454777|ref|ZP_05620028.1| ATP-dependent chaperone protein ClpB [Enhydrobacter aerosaccus
           SK60]
 gi|257447710|gb|EEV22702.1| ATP-dependent chaperone protein ClpB [Enhydrobacter aerosaccus
           SK60]
          Length = 865

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A +AVA A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 566 MEEKLHERVVGQDEAVQAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 620 KALASFLFDDENAMIRIDMSEFMEKHSVSRLV 651


>gi|225025121|ref|ZP_03714313.1| hypothetical protein EIKCOROL_02013 [Eikenella corrodens ATCC
           23834]
 gi|224942082|gb|EEG23291.1| hypothetical protein EIKCOROL_02013 [Eikenella corrodens ATCC
           23834]
          Length = 674

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 158 DVAGCDEAKEEVQEIVDYLQAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 210

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 211 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 261


>gi|237809063|ref|YP_002893503.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Tolumonas
           auensis DSM 9187]
 gi|237501324|gb|ACQ93917.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Tolumonas
           auensis DSM 9187]
          Length = 758

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L   + GQ  A   +  A+     R        +     + L  GPTGVGKT
Sbjct: 452 TLRNLERNLKLVVFGQDKAIEVLTDAI-----RLSRSGLGNERRPVGSFLFAGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            ++ +LA+  G   ++ +++++ E            GYVG     ++ D V    + 
Sbjct: 507 EVTLQLAKAMGIELLRFDMSEYMERHTVSRLIGAPPGYVGYEQGGLLTDAVIKQPHC 563


>gi|145640973|ref|ZP_01796555.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274487|gb|EDK14351.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 708

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 414 MEDELHKRVIGQEEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 467

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 468 KTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLV 499


>gi|1176560|sp|P46508|YME1_SCHMA RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|453978|emb|CAA82844.1| ATPase (putative) [Schistosoma mansoni]
          Length = 662

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      LRN  +  Q+ A L     PK +LLVGP GVGKT +++ ++ 
Sbjct: 167 DVQGCDEVKKELVDVVEFLRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSG 221

Query: 76  LAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            A  PF+    + F E  +G     + Q+       +  +V     D V
Sbjct: 222 EAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV 270


>gi|87303473|ref|ZP_01086256.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87281886|gb|EAQ73849.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 603

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           VS     + G  +AK  +   +   + RQ          +P+ +LLVGP G GKT +++ 
Sbjct: 129 VSVRFEDVAGINEAKAELQEVV--SFLRQPERFTALGAKIPRGVLLVGPPGTGKTLLAKA 186

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  ++F E+ +VG     V  + +   + A  I+     D V
Sbjct: 187 IAGEAGVPFFSMAASEFVEL-FVGVGASRVRDLFKRAKEKAPCIIFIDEVDAV 238


>gi|326566514|gb|EGE16660.1| cell division protease FtsH [Moraxella catarrhalis 12P80B1]
 gi|326569820|gb|EGE19870.1| cell division protease FtsH [Moraxella catarrhalis BC8]
 gi|326571574|gb|EGE21589.1| cell division protease FtsH [Moraxella catarrhalis BC7]
 gi|326575146|gb|EGE25074.1| cell division protease FtsH [Moraxella catarrhalis CO72]
 gi|326577556|gb|EGE27433.1| cell division protease FtsH [Moraxella catarrhalis O35E]
          Length = 631

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G +++K+ VA  +   R+  +  +L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 160 DVAGVEESKQEVAEIVDFLRDPSKFTKLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 215 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 263


>gi|326560922|gb|EGE11287.1| cell division protease FtsH [Moraxella catarrhalis 7169]
 gi|326571268|gb|EGE21290.1| cell division protease FtsH [Moraxella catarrhalis BC1]
          Length = 631

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G +++K+ VA  +   R+  +  +L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 160 DVAGVEESKQEVAEIVDFLRDPSKFTKLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 215 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 263


>gi|323307733|gb|EGA60996.1| Yta12p [Saccharomyces cerevisiae FostersO]
          Length = 825

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|310829343|ref|YP_003961700.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
 gi|308741077|gb|ADO38737.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium
           limosum KIST612]
          Length = 627

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 195 RIPKGVLLVGPPGTGKTLLARAVAGEAGVPFYIISGSDFVEM-FVGVGASRV-RDLFETA 252


>gi|281339537|gb|EFB15121.1| hypothetical protein PANDA_016544 [Ailuropoda melanoleuca]
          Length = 734

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 250 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 304

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 305 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 357


>gi|256273497|gb|EEU08431.1| Yta12p [Saccharomyces cerevisiae JAY291]
          Length = 825

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|215400737|ref|YP_002327499.1| putative cell division protein FtsH [Vaucheria litorea]
 gi|310946771|sp|B7T1V0|FTSH_VAULI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|194441187|gb|ACF70915.1| putative cell division protein FtsH [Vaucheria litorea]
          Length = 644

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV---- 107
           +PK ++L+GP G GKT +++ +A  AG PFI +  ++F E+ +VG    ++ RDL     
Sbjct: 207 IPKGVILIGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASRV-RDLFKTAQ 264

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 265 QNAPCIVFIDEIDAV 279


>gi|220927544|ref|YP_002504453.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
 gi|310943126|sp|B8I4B9|FTSH_CLOCE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219997872|gb|ACL74473.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10]
          Length = 619

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILL 58
           K     +  +        + G  + K  +A  +   +   +  +L A +     PK +LL
Sbjct: 148 KSRAKMTVDDKKKITFENVAGADEEKEELAEIVEFLKAPKKFVELGARI-----PKGVLL 202

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           VGP G GKT +++ ++  AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 203 VGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAKKN 255


>gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
 gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
          Length = 812

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +A   +   +++         DL  ++ P+ +LL GP G GKT ++R +A  AG
Sbjct: 168 DVAGADEAVDELHE-IKDFLEDPTRYQDLGAKI-PRGVLLYGPPGTGKTLLARAVAGEAG 225

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 VPFFSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|322831464|ref|YP_004211491.1| ATP-dependent chaperone ClpB [Rahnella sp. Y9602]
 gi|321166665|gb|ADW72364.1| ATP-dependent chaperone ClpB [Rahnella sp. Y9602]
          Length = 857

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHNRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFNSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|313683015|ref|YP_004060753.1| membrane protease ftsh catalytic subunit [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155875|gb|ADR34553.1| membrane protease FtsH catalytic subunit [Sulfuricurvum kujiense
           DSM 16994]
          Length = 652

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 19/219 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G Q+AK  V   + +  +      +L  ++ PK +LLVG  G GKT +++ +A  A
Sbjct: 183 EDVAGAQEAKEEVHEIV-DFLKFPDRYVELGAKI-PKGVLLVGSPGTGKTLLAKAVAGEA 240

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  V  + F E+ +VG    ++ RDL + A          DE+       A      
Sbjct: 241 EVPFFSVSGSSFIEM-FVGVGAARV-RDLFEQAKKDAPSIIFIDEIDAIGKSRA------ 292

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A           +   + L + +    +  I +   ++     D P     G  +   L 
Sbjct: 293 AGGMMGGNDEREQTLNQLLAEMDGFGTDTPIIILAATNRPEILD-PALLRPGRFDRQVLV 351

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            K    GR   +++ V+         + D  +D++ + R
Sbjct: 352 DKPDYQGRIDILKVHVKG-------VKQDSDVDLEEIAR 383


>gi|33860785|ref|NP_892346.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633727|emb|CAE18685.1| cell division protein FtsH2 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 618

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 252

Query: 112 NI 113
             
Sbjct: 253 KN 254


>gi|323332054|gb|EGA73465.1| Yta12p [Saccharomyces cerevisiae AWRI796]
          Length = 825

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|317163848|gb|ADV07389.1| hypothetical protein NGTW08_0417 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 642

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 148 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 200

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 201 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 251


>gi|303254914|ref|ZP_07340999.1| cell division protein FtsH [Streptococcus pneumoniae BS455]
 gi|302598185|gb|EFL65246.1| cell division protein FtsH [Streptococcus pneumoniae BS455]
          Length = 652

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 103/273 (37%), Gaps = 35/273 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLD------EFDKIVARDSGNGIGVSREGVQ 272
              +D        D+++A  S     VS++G +
Sbjct: 412 KSIIDASDIDEAEDRVIAGPSKKDKTVSQKGRE 444


>gi|259148663|emb|CAY81908.1| Yta12p [Saccharomyces cerevisiae EC1118]
          Length = 825

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|255545040|ref|XP_002513581.1| ATP-dependent peptidase, putative [Ricinus communis]
 gi|223547489|gb|EEF48984.1| ATP-dependent peptidase, putative [Ricinus communis]
          Length = 821

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   L+N  +  +L   L     PK 
Sbjct: 356 YAPKELNKEIMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKL-----PKG 410

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 411 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 469

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 470 IIFIDEIDAV 479


>gi|194208909|ref|XP_001488280.2| PREDICTED: similar to Paraplegin (Spastic paraplegia protein 7)
           [Equus caballus]
          Length = 765

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 281 KDVAGMHEAKLEVKEFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 335

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 336 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARSRAPCIVYIDEIDAVGKK 388


>gi|124025019|ref|YP_001014135.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A]
 gi|123960087|gb|ABM74870.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A]
          Length = 615

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EASVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|123965493|ref|YP_001010574.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
 gi|123199859|gb|ABM71467.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515]
          Length = 619

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 253

Query: 112 NI 113
             
Sbjct: 254 KN 255


>gi|160878301|ref|YP_001557269.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
 gi|160426967|gb|ABX40530.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans
           ISDg]
          Length = 609

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  Q+ A +     PK +LL GP G GKT +++ +A  AG PF  +  + F
Sbjct: 179 IVDFLKNPKKFIQVGARI-----PKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 233

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL   A   
Sbjct: 234 VEM-FVGVGASRV-RDLFSEAKKN 255


>gi|508233|gb|AAA62606.1| Rca1p [Saccharomyces cerevisiae]
          Length = 825

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|72383431|ref|YP_292786.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL2A]
 gi|72003281|gb|AAZ59083.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 615

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EASVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|71024695|ref|XP_762577.1| hypothetical protein UM06430.1 [Ustilago maydis 521]
 gi|46101970|gb|EAK87203.1| hypothetical protein UM06430.1 [Ustilago maydis 521]
          Length = 918

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 97/247 (39%), Gaps = 27/247 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ +A ++VA A+     R              + L  G +G GKT +SR
Sbjct: 582 LERTLAKEVIGQDEAVKSVAQAI-----RLSRSGLADANRPIASFLFAGSSGSGKTLLSR 636

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAI------ 111
            LA+         ++++ ++F+E            GYVG     ++ + V          
Sbjct: 637 TLAKCMFDSADAMVRIDCSEFSEKHSISRLIGAPPGYVGHEEGGVLTEAVRRKPFSIVLL 696

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           + + ++ R+ ++    +  E R+ D+   + +  NT  +    L    I++ E++     
Sbjct: 697 DEIEKAAREFIQLFLGVLDEGRLQDSQGRQVSFRNTIIIMTSNLGSAYINESEVEEMTDA 756

Query: 172 TSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           T   + N       +  +  +  +  FSK+     K  + + +++    +  +     + 
Sbjct: 757 TRQLVMNSIKAAMPTEFVNRIDSIVVFSKLSRRNVKSIVDVRLREIEQRIQANGGKSKLV 816

Query: 230 MDTVHRD 236
           +D   +D
Sbjct: 817 LDDAAKD 823


>gi|300722513|ref|YP_003711803.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Xenorhabdus nematophila ATCC 19061]
 gi|297629020|emb|CBJ89605.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Xenorhabdus nematophila ATCC 19061]
          Length = 761

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  A+  A++            ++     + L  GPTGVGKT +
Sbjct: 449 RTLDDRLKMLVFGQDKAIGALTEAIK-----MSRAGLGQEHKPIGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA++     ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 504 TVQLAKMLNVKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAIIKHPHS 558


>gi|297743224|emb|CBI36091.3| unnamed protein product [Vitis vinifera]
          Length = 904

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 79/219 (36%), Gaps = 32/219 (14%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 463 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 514

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 515 GASRVRALYQEAKENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVC 567

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
           L   E     I I     S++  +   P     G  +      K    GR + +++    
Sbjct: 568 LDGFEGRGNVITI----ASTNRPDILDPALVRPGRFDRKIYIPKPGIIGRIEILKVH--- 620

Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVE-NYGIVFLDEF 252
              + M +      D+D +   S+        +  + E 
Sbjct: 621 ARKKPMAE------DVDYMAVGSMTDGMVGAELANIIEI 653


>gi|257095285|ref|YP_003168926.1| ATP-dependent metalloprotease FtsH [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047809|gb|ACV36997.1| ATP-dependent metalloprotease FtsH [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 624

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     PK +LLVG  G GKT +++ +A 
Sbjct: 152 DVAGCDEAKEEVSELVDFLRDPSKFQKLGGRI-----PKGVLLVGNPGTGKTLLAKAIAG 206

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 207 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 242


>gi|255655991|ref|ZP_05401400.1| chaperone [Clostridium difficile QCD-23m63]
 gi|296450582|ref|ZP_06892335.1| chaperone protein ClpB [Clostridium difficile NAP08]
 gi|296879299|ref|ZP_06903294.1| chaperone protein ClpB [Clostridium difficile NAP07]
 gi|296260426|gb|EFH07268.1| chaperone protein ClpB [Clostridium difficile NAP08]
 gi|296429842|gb|EFH15694.1| chaperone protein ClpB [Clostridium difficile NAP07]
          Length = 864

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 568 KLEDELHKRVIGQDEAVTAVSNAV------IRARAGLKDERKPIGSFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         I+++++++ E   V R V
Sbjct: 622 AKTLARNLFDSEDNIIRIDMSEYMEKHAVSRLV 654


>gi|242309032|ref|ZP_04808187.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT
           98-5489]
 gi|239524456|gb|EEQ64322.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT
           98-5489]
          Length = 574

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 28/198 (14%)

Query: 3   LTFNFSPREIVSEL-DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILL 58
           +  N  P  I S L    + G  +AK   + +   L+   + Q     L     P+ +LL
Sbjct: 162 MLHNIKP--IHSNLTFDDVAGIDEAKEELKEIVDYLKFPKKYQDFGIKL-----PRGVLL 214

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRE 116
           VGP GVGKT I++ LA  A  PF       F +   G   + V  +          I+  
Sbjct: 215 VGPPGVGKTLIAKALAGEAKVPFFYQSGASFVQIYAGMGAKRVHDLFTKAKLNVPAIIFI 274

Query: 117 SRRDEV-REQASINAEER------ILDALVGKTATS--------NTREVFRKKLRDGEIS 161
              D V + +  +  +ER      +L  + G   ++        N  E   K L      
Sbjct: 275 DEIDAVGKARGGMRNDERETTLNQLLTEMDGFEDSNGIIVIGATNNIESMDKALLRSGRF 334

Query: 162 DKEIDIEVADTSSDISNF 179
           D+ I +E+ +    I   
Sbjct: 335 DRRIFVELPNLQERIKIL 352


>gi|222152938|ref|YP_002562115.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           uberis 0140J]
 gi|222113751|emb|CAR41760.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus uberis 0140J]
          Length = 700

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+ S L +++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 408 KEMDSRLKQHVIGQNQAVEAVARAI-----RRNRAGFDDGHRPIGSFLFVGPTGVGKTEL 462

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 463 AKQLALDMFGSKEAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 505


>gi|148708697|gb|EDL40644.1| fidgetin-like 1, isoform CRA_a [Mus musculus]
          Length = 701

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 428 DDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 485

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 486 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 520


>gi|119587133|gb|EAW66729.1| spastic paraplegia 7, paraplegin (pure and complicated autosomal
           recessive), isoform CRA_d [Homo sapiens]
          Length = 677

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 204 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 258

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 259 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 311


>gi|119026482|ref|YP_910327.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703]
 gi|118766066|dbj|BAF40245.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703]
          Length = 905

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 586 MEEYLGKRVIGQKEAIQAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 640

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 641 ALADFLFDDEKAMVRIDMSEYMEKASVSR 669


>gi|33585736|gb|AAH55488.1| Spg7 protein [Mus musculus]
          Length = 735

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 263 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 317

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 318 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 370


>gi|4507173|ref|NP_003110.1| paraplegin isoform 1 [Homo sapiens]
 gi|116242796|sp|Q9UQ90|SPG7_HUMAN RecName: Full=Paraplegin; AltName: Full=Spastic paraplegia 7
           protein
 gi|3273089|emb|CAA76314.1| paraplegin [Homo sapiens]
 gi|119587132|gb|EAW66728.1| spastic paraplegia 7, paraplegin (pure and complicated autosomal
           recessive), isoform CRA_c [Homo sapiens]
 gi|190692011|gb|ACE87780.1| spastic paraplegia 7 (pure and complicated autosomal recessive)
           protein [synthetic construct]
 gi|254071373|gb|ACT64446.1| spastic paraplegia 7 (pure and complicated autosomal recessive)
           protein [synthetic construct]
 gi|261858852|dbj|BAI45948.1| spastic paraplegia 7 [synthetic construct]
          Length = 795

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|4704460|gb|AAD28099.1| paraplegin [Homo sapiens]
          Length = 795

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|195977170|ref|YP_002122414.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973875|gb|ACG61401.1| cell division protein FtsH-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 639

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 170 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 225 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 263


>gi|126699637|ref|YP_001088534.1| chaperone [Clostridium difficile 630]
 gi|255101151|ref|ZP_05330128.1| chaperone [Clostridium difficile QCD-63q42]
 gi|255307025|ref|ZP_05351196.1| chaperone [Clostridium difficile ATCC 43255]
 gi|115251074|emb|CAJ68905.1| Chaperone protein [Clostridium difficile]
          Length = 864

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 568 KLEDELHKRVIGQDEAVTAVSNAV------IRARAGLKDERKPIGSFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         I+++++++ E   V R V
Sbjct: 622 AKTLARNLFDSEDNIIRIDMSEYMEKHAVSRLV 654


>gi|17560432|ref|NP_504197.1| FIdGetin-Like (mammalian developmental AAA ATPase) related family
           member (figl-1) [Caenorhabditis elegans]
 gi|74956689|sp|O16299|FIGL1_CAEEL RecName: Full=Fidgetin-like protein 1; AltName: Full=Fidgetin
           homolog
 gi|2291232|gb|AAB65351.1| Hypothetical protein F32D1.1 [Caenorhabditis elegans]
          Length = 594

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G + AK+A+   +   ++R  +   +R    PK +LL GP G GKT I R +A    
Sbjct: 317 DVAGLEGAKKALREIVVLPFKRPDVFTGIRAP--PKGVLLFGPPGTGKTMIGRCVASQCK 374

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   +VG   E+++R L  VA
Sbjct: 375 ATFFNISASSLT-SKWVGEG-EKLVRALFSVA 404


>gi|151946245|gb|EDN64476.1| ATPase [Saccharomyces cerevisiae YJM789]
          Length = 825

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|6323736|ref|NP_013807.1| Yta12p [Saccharomyces cerevisiae S288c]
 gi|1710045|sp|P40341|YTA12_YEAST RecName: Full=Mitochondrial respiratory chain complexes assembly
           protein YTA12; AltName: Full=Tat-binding homolog 12
 gi|807972|emb|CAA89236.1| Rca1p [Saccharomyces cerevisiae]
 gi|285814091|tpg|DAA09986.1| TPA: Yta12p [Saccharomyces cerevisiae S288c]
          Length = 825

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|320531218|ref|ZP_08032203.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136587|gb|EFW28550.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 688

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASRV-RDLFDQA 293


>gi|296112664|ref|YP_003626602.1| cell division protease FtsH [Moraxella catarrhalis RH4]
 gi|295920358|gb|ADG60709.1| cell division protease FtsH [Moraxella catarrhalis RH4]
          Length = 634

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G +++K+ VA  +   R+  +  +L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 163 DVAGVEESKQEVAEIVDFLRDPSKFTKLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 218 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 266


>gi|294791953|ref|ZP_06757101.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           6_1_27]
 gi|294457183|gb|EFG25545.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           6_1_27]
          Length = 815

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDEAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|269798082|ref|YP_003311982.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|269094711|gb|ACZ24702.1| ATPase AAA-2 domain protein [Veillonella parvula DSM 2008]
          Length = 815

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDEAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|326563842|gb|EGE14093.1| cell division protease FtsH [Moraxella catarrhalis 46P47B1]
 gi|326576768|gb|EGE26675.1| cell division protease FtsH [Moraxella catarrhalis 101P30B1]
          Length = 631

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G +++K+ VA  +   R+  +  +L A      +P+ +L+VGP G GKT +++ +A 
Sbjct: 160 DVAGVEESKQEVAEIVDFLRDPSKFTKLGA-----TIPRGVLMVGPPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 215 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 263


>gi|51013649|gb|AAT93118.1| YMR089C [Saccharomyces cerevisiae]
          Length = 825

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|88607130|ref|YP_505053.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma
           phagocytophilum HZ]
 gi|88598193|gb|ABD43663.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma
           phagocytophilum HZ]
          Length = 773

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L + I GQ +A   V  A+     R         +      L  GPTGVGKT +
Sbjct: 464 RDLEDNLKKVIFGQDEAITHVVDAI-----RIAKAGMRSSQKPLACYLFAGPTGVGKTEL 518

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            R+ A+  G   I+ +++++ E   V R
Sbjct: 519 VRQFAKCMGMKLIRFDMSEYVESHTVSR 546


>gi|148708698|gb|EDL40645.1| fidgetin-like 1, isoform CRA_b [Mus musculus]
          Length = 686

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 413 DDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 470

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 471 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 505


>gi|10442029|gb|AAG17290.1|AF263914_1 fidgetin-like 1 [Mus musculus]
          Length = 683

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 410 DDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 467

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 468 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 502


>gi|186683260|ref|YP_001866456.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186465712|gb|ACC81513.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102]
          Length = 880

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 576 LEEELHKRVIGQDEAVRAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELA 629

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 630 KALAEYLFDTEDALVRIDMSEYMEKHAVAR 659


>gi|325279234|ref|YP_004251776.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
 gi|324311043|gb|ADY31596.1| ATP-dependent metalloprotease FtsH [Odoribacter splanchnicus DSM
           20712]
          Length = 668

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L++  +  +L   +     PK  LLVGP G GKT +++ +A
Sbjct: 207 KDVAGLAEAKQEVEEIVSFLKSPDKYTKLGGKI-----PKGALLVGPPGTGKTLMAKAMA 261

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 262 GEANVPFFSMSGSDFVEM-FVGVGASRV-RDLFKQA 295


>gi|298255108|ref|ZP_06978694.1| hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str.
           Canada MDR_19A]
          Length = 663

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|292900313|ref|YP_003539682.1| chaperone ClpB [Erwinia amylovora ATCC 49946]
 gi|291200161|emb|CBJ47287.1| chaperone ClpB (heat shock protein) [Erwinia amylovora ATCC 49946]
          Length = 857

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQQ+A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHTRVIGQQEAVEAVSDAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|306526251|sp|P54813|YME1_CAEEL RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|224490507|emb|CAA88955.2| C. elegans protein M03C11.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 723

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 9   PREI----VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           P+E+    V      + G  +AK     +   L++  +  +L   L     PK +LLVGP
Sbjct: 235 PQEVNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRL-----PKGVLLVGP 289

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT ++R +A  A  PF     ++F E+  VG+   ++ RDL D A
Sbjct: 290 PGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARRV-RDLFDKA 336


>gi|326773865|ref|ZP_08233147.1| cell division protein [Actinomyces viscosus C505]
 gi|326636004|gb|EGE36908.1| cell division protein [Actinomyces viscosus C505]
          Length = 691

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASRV-RDLFDQA 293


>gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 759

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQA 275


>gi|308233642|ref|ZP_07664379.1| membrane protease FtsH catalytic subunit [Atopobium vaginae DSM
           15829]
 gi|328944405|ref|ZP_08241867.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|327490989|gb|EGF22766.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
          Length = 717

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +A   +   +R+  +  +    L  ++ P+ +LLVG  G GKT +++ +A  A
Sbjct: 249 KDVAGIDEAVEELKE-VRDFLKDPKRYKKLGAKI-PRGVLLVGAPGTGKTLLAKAVAGEA 306

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           G PF  +  + F E+ +VG    ++ RDL   A +
Sbjct: 307 GVPFFSISGSDFVEM-FVGVGASRV-RDLFKQAKH 339


>gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
 gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491]
 gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491]
          Length = 643

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 30/271 (11%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V   +   +N  R   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDMAGNAEAKDEVVEIVDFLKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEER 133
             A  PF  V  + F E+ +VG    ++ RDL + A          DE+       A   
Sbjct: 236 GEANVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAKKEAPSIIFIDEIDAIGKSRANGM 293

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           +              +   + L + +  + +    +   +++      P     G  +  
Sbjct: 294 V------GGGNDEREQTLNQLLAEMDGFNSDSSPVIVLAATNRPEVLDPALLRPGRFDRQ 347

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253
            L  K    GR + +++ ++         +  R +D+  V + +  +        ++E  
Sbjct: 348 VLVDKPDFEGRVEILKVHIK-------NIKLARNVDLFEVSKLTAGLAGADLANIVNEAA 400

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
            +  R+   G+       Q D L  VE S  
Sbjct: 401 LLAGRNDKKGVE------QSDFLEAVERSIA 425


>gi|77459812|ref|YP_349319.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens Pf0-1]
 gi|77383815|gb|ABA75328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           fluorescens Pf0-1]
          Length = 756

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKALGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|322818157|gb|EFZ25648.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi]
          Length = 564

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG  +AK+ V      L N  +  +L A L     PK  LL G  G GKT +++ +A
Sbjct: 87  EDVIGIPEAKQEVQQYVEFLTNPNKFTRLGARL-----PKGCLLTGEPGTGKTLLAKAVA 141

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF     + F E+  G   + V ++  +    A  IV     D +  +A      
Sbjct: 142 GEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARSSAPAIVFIDEIDAIGSRAGKIGGS 201

Query: 127 ----SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                     ++L  L G           A +N ++   K L      D++++IE+ D +
Sbjct: 202 VSSEENRTINQLLAELDGLNTGTDAIIVIAATNFQDNIDKALLREGRFDRKVNIEMPDKA 261

Query: 174 SDISNF 179
           + +  F
Sbjct: 262 ARVDIF 267


>gi|320094723|ref|ZP_08026477.1| chaperone protein ClpB [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978365|gb|EFW09954.1| chaperone protein ClpB [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 870

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +E+ + +IGQ+DA +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 572 MEAEIGKRLIGQKDAVKAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 626

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I++++++++E   V R V
Sbjct: 627 SLAEFLFDDERAMIRIDMSEYSEKHAVARLV 657


>gi|307178105|gb|EFN66932.1| Spastin [Camponotus floridanus]
          Length = 711

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 437 EDIAGQETAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATQC 494

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 495 HATFFSISAASLT-SKYVGEG-EKLVRALFAIA 525


>gi|269140172|ref|YP_003296873.1| protein disaggregation chaperone [Edwardsiella tarda EIB202]
 gi|267985833|gb|ACY85662.1| protein disaggregation chaperone [Edwardsiella tarda EIB202]
          Length = 857

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHRRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|225420297|ref|ZP_03762600.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
 gi|225041114|gb|EEG51360.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           V   LRN  +   + A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 163 VVDFLRNPQKYTSVGARI-----PKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 217

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 218 VEM-FVGVGASRV-RDLFEEAKKN 239


>gi|254382002|ref|ZP_04997364.1| cell division protein [Streptomyces sp. Mg1]
 gi|194340909|gb|EDX21875.1| cell division protein [Streptomyces sp. Mg1]
          Length = 652

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 8   SPREI---VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGP 61
            P E+          + G  + K  +      LRN  R Q+L A +     P  +LL G 
Sbjct: 185 KPVELAGAKRTTFEDVAGIDEVKGELGDVVDFLRNPQRYQRLGARM-----PGGVLLAGA 239

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            G GKT ++R +A  AG PF     ++F E+  VG    ++ R+L   A
Sbjct: 240 PGTGKTLLARAVAGEAGVPFFSASASEFIEM-IVGVGASRV-RELFAEA 286


>gi|153003502|ref|YP_001377827.1| ATPase [Anaeromyxobacter sp. Fw109-5]
 gi|152027075|gb|ABS24843.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 890

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L++ ++GQ++A RAV+ A+R      +    L+D   P    L +GPTGVGKT  
Sbjct: 563 EMERALEKRVVGQEEALRAVSEAVR------RARTGLKDPSRPIGTFLFLGPTGVGKTET 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+ ++++F E   V R V
Sbjct: 617 ARALAEYLFNDEEAMIRFDMSEFQERHTVSRLV 649


>gi|77918603|ref|YP_356418.1| ATP-dependent zinc protease/ cell division protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77544686|gb|ABA88248.1| membrane protease FtsH catalytic subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 616

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   + +   L++  +  +L   +     PK +LLVGP G GKT + R +A
Sbjct: 153 KDVAGIDEAKDELQEIVAFLKDPKKFSRLGGRI-----PKGVLLVGPPGTGKTLLGRAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFMQGKKNAPCIIFIDEIDAV 257


>gi|85858020|ref|YP_460222.1| ATPase Clp protease ATP binding subunit [Syntrophus aciditrophicus
           SB]
 gi|85721111|gb|ABC76054.1| ATPase clp protease ATP binding subunit [Syntrophus aciditrophicus
           SB]
          Length = 768

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++ +EL   I GQ  A   +  ++    +R +      D     + LLVGPTGVGKT +
Sbjct: 457 RDLETELKSTIFGQDQAIEQLVESI----KRSRAGFREPD-KPIGSFLLVGPTGVGKTEL 511

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA   G P  + +++++ E   V +
Sbjct: 512 ARQLALSLGIPLHRYDMSEYQEKHTVAK 539


>gi|31560300|ref|NP_068691.2| fidgetin-like protein 1 [Mus musculus]
 gi|254039741|ref|NP_001156831.1| fidgetin-like protein 1 [Mus musculus]
 gi|254039743|ref|NP_001156832.1| fidgetin-like protein 1 [Mus musculus]
 gi|81913480|sp|Q8BPY9|FIGL1_MOUSE RecName: Full=Fidgetin-like protein 1
 gi|26342268|dbj|BAC34796.1| unnamed protein product [Mus musculus]
 gi|30354687|gb|AAH51942.1| Fidgetin-like 1 [Mus musculus]
 gi|30851350|gb|AAH52415.1| Fidgetin-like 1 [Mus musculus]
 gi|56205315|emb|CAI25376.1| fidgetin-like 1 [Mus musculus]
 gi|74180683|dbj|BAE25569.1| unnamed protein product [Mus musculus]
 gi|148708699|gb|EDL40646.1| fidgetin-like 1, isoform CRA_c [Mus musculus]
          Length = 683

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 410 DDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 467

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 468 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 502


>gi|308506593|ref|XP_003115479.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
 gi|308256014|gb|EFO99966.1| CRE-FIGL-1 protein [Caenorhabditis remanei]
          Length = 595

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G + AK+A+   +   ++R  +   +R    PK +LL GP G GKT I R +A    
Sbjct: 319 DVAGLEGAKKALREIVVLPFKRPDVFTGIRAP--PKGVLLFGPPGTGKTMIGRCVASQCK 376

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   +VG   E+++R L  VA
Sbjct: 377 ATFFNISASSLT-SKWVGEG-EKLVRALFSVA 406


>gi|307824853|ref|ZP_07655076.1| ATP-dependent chaperone ClpB [Methylobacter tundripaludum SV96]
 gi|307734211|gb|EFO05065.1| ATP-dependent chaperone ClpB [Methylobacter tundripaludum SV96]
          Length = 858

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L + +IGQ++A +AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEQLGKRVIGQEEALKAVSNAIR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGR 97
           + LA      P   +++++++F E   V R
Sbjct: 616 KALAEFMFDTPDAMVRIDMSEFMEKHSVAR 645


>gi|124023616|ref|YP_001017923.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303]
 gi|123963902|gb|ABM78658.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303]
          Length = 625

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKDELTEIVDFLKTPERYTEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EAEVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|91215670|ref|ZP_01252640.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
 gi|91186136|gb|EAS72509.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus
           torquis ATCC 700755]
          Length = 699

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK   + +   L++  +   L   +     PK  LLVGP G GKT +++ +A
Sbjct: 201 KDVAGLEGAKDEVQEIVDFLKHPDKYTNLGGKI-----PKGALLVGPPGTGKTLLAKAVA 255

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 256 GEAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 289


>gi|26353602|dbj|BAC40431.1| unnamed protein product [Mus musculus]
          Length = 683

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 410 DDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 467

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 468 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 502


>gi|55378742|ref|YP_136592.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049]
 gi|55231467|gb|AAV46886.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049]
          Length = 695

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 98/269 (36%), Gaps = 39/269 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKT 67
           EI S     I G    KR +  A+           DL D L    P  +LL GP G GKT
Sbjct: 423 EIPSTSFSDIGGLDGPKRELIRAV----NWPLTKPDLFDSLDIDPPAGVLLYGPPGTGKT 478

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA------------INIVR 115
            ++R +A  + A FI V   +     YVG + E+ +R + D A            I+ + 
Sbjct: 479 MLARAVASTSDANFIPVNGPELMNK-YVGES-ERAVRRVFDQARSNAPSIVFFDEIDALG 536

Query: 116 ESRRDEVREQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDI 167
            +R D+    AS     ++L  L G          AT+N R+     L      D+ +++
Sbjct: 537 TTRSDDNDSGASARTVSQLLTELDGIEGREGVTVIATTNRRDRLDDALLRTGRFDRIVEV 596

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            + D +     FD   G  +      E F+          I   V++     + +     
Sbjct: 597 SLPDAADRAEIFDTHIGDRITGQVDLEAFAARTAGYSGSDIAAVVREAGLLAIEEHLRAQ 656

Query: 228 IDMDTVHR----------DSIQMVENYGI 246
            D D   +           ++Q VE+ G 
Sbjct: 657 GDSDRSRKPVSLRESHLEKALQSVESSGA 685


>gi|145220499|ref|YP_001131208.1| ATPase [Prosthecochloris vibrioformis DSM 265]
 gi|145206663|gb|ABP37706.1| ATPase AAA-2 domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 441

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL   +IGQ +A  AV+ A++      +  A + D   P  + + +GPTGVGKT ++
Sbjct: 135 IEEELHARVIGQNEAVTAVSDAVK------RSRAGMGDMKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDDEAMIRIDMSEYMESHTVSRLV 220


>gi|71414691|ref|XP_809439.1| katanin-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70873820|gb|EAN87588.1| katanin-like protein, putative [Trypanosoma cruzi]
          Length = 923

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AKR+V  A+    RR  L   LRD   P+ +LL GP G GKT I+R +A  A
Sbjct: 606 DDIAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRA 663

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              F+ +  +      ++G   E+++R L  VA+
Sbjct: 664 QCTFLNISASSLM-SKWMGDG-EKLVRCLFAVAV 695


>gi|325200518|gb|ADY95973.1| ATP-dependent metalloprotease FtsH [Neisseria meningitidis H44/76]
          Length = 642

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 148 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 200

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 201 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 251


>gi|256085913|ref|XP_002579154.1| Afg3-like protein 2 (M41 family) [Schistosoma mansoni]
 gi|238664566|emb|CAZ35393.1| Afg3-like protein 2 (M41 family) [Schistosoma mansoni]
          Length = 662

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  + + L A +     P+  +L GP G GKT +++  A 
Sbjct: 256 DVAGCEEAKLEIIEFVNFLKNPTKYEALGAKI-----PRGAILKGPPGTGKTLLAKATAG 310

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF+ V  ++F E+ +VG     V  +     D A  I+     D +
Sbjct: 311 EANVPFLSVSGSEFLEM-FVGVGPKRVRDMFASARDKAPCILFIDEIDAI 359


>gi|227499105|ref|ZP_03929240.1| ATPase [Acidaminococcus sp. D21]
 gi|226904552|gb|EEH90470.1| ATPase [Acidaminococcus sp. D21]
          Length = 850

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 557 LDEILHQRVIGQDEAVKAVSEAV------IRARAGIKDPNKPIGSFIFLGPTGVGKTELA 610

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA +        I+++++++ E   V R
Sbjct: 611 KSLAEVLFNDEKSIIRIDMSEYMEKHTVSR 640


>gi|254506126|ref|ZP_05118270.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           parahaemolyticus 16]
 gi|219550944|gb|EED27925.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           parahaemolyticus 16]
          Length = 756

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +EI+  LD      + GQ DA   ++ A++         A L  E  P  + L  GPT
Sbjct: 447 SDKEILKNLDEKMKMLVFGQDDAIDVLSEAIK------LTRAGLGAENKPVGSFLFAGPT 500

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAI 111
           GVGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    
Sbjct: 501 GVGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKNP 560

Query: 112 N 112
           +
Sbjct: 561 H 561


>gi|186475877|ref|YP_001857347.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
 gi|184192336|gb|ACC70301.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815]
          Length = 653

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK   R +   LR+  R+RR           +PK +L+VG  G GKT +++ 
Sbjct: 182 DDIAGIDEAKAELRQIVAFLRDAERYRRLGG-------KIPKGVLIVGAPGTGKTLLAKA 234

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  V    F E+ +VG    ++ RDL + A
Sbjct: 235 VAGEAGVPFHSVSGAGFVEM-FVGVGAARV-RDLFEQA 270


>gi|62020635|gb|AAH36104.1| Spastic paraplegia 7 (pure and complicated autosomal recessive)
           [Homo sapiens]
          Length = 795

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 309 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 363

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 364 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|260905554|ref|ZP_05913876.1| cell division protein [Brevibacterium linens BL2]
          Length = 724

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV-- 109
           +PK +LL G  G GKT +++ +A  AG PF  +  + F E+ YVG    ++ RDL +   
Sbjct: 206 IPKGVLLYGQPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-YVGVGASRV-RDLFEQAK 263

Query: 110 --AINIVRESRRDEVREQ-------ASINAEERILDALVGKT-----------ATSNTRE 149
             A  I+     D V  Q            E+ +   LV              A +N  +
Sbjct: 264 TNAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFDVKTNVILIAATNRPD 323

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
           V    L      D++I +E  D        ++         ++          G      
Sbjct: 324 VLDPALLRPGRFDRQIPVEAPDMKGREHILEVHSEGKPLADDVDLGQIAKRTPGFSGADL 383

Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +V      L   E+ ++ID + +  ++I  V
Sbjct: 384 ANVLNEAALLTARENSKVID-NRILDEAIDRV 414


>gi|291613529|ref|YP_003523686.1| ATP-dependent metalloprotease FtsH [Sideroxydans lithotrophicus
           ES-1]
 gi|291583641|gb|ADE11299.1| ATP-dependent metalloprotease FtsH [Sideroxydans lithotrophicus
           ES-1]
          Length = 632

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 157 DVAGCDEAKEEVSELVDFLRDPTKFQNLGGRI-----PRGVLMVGSPGTGKTLLAKAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 212 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKQ 247


>gi|227821889|ref|YP_002825859.1| ATP-dependent specificity subunit of ClpA-ClpP serine protease
           [Sinorhizobium fredii NGR234]
 gi|227340888|gb|ACP25106.1| ATP-dependent specificity subunit of ClpA-ClpP serine protease
           [Sinorhizobium fredii NGR234]
          Length = 830

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   + GQ  A  A+A +++         A LR+   P    +  GPTGVGKT ++
Sbjct: 466 LEKELRSVVYGQDLAIEALASSIK------LARAGLREPNKPIGCYVFSGPTGVGKTEVA 519

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   ++ +++++ E            GYVG +   ++ D VD   + 
Sbjct: 520 KQLATSLGVELLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHC 573


>gi|148242853|ref|YP_001228010.1| cell division protein FtsH [Synechococcus sp. RCC307]
 gi|147851163|emb|CAK28657.1| Cell division protein FtsH [Synechococcus sp. RCC307]
          Length = 626

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + ++  A      +PK +LLVGP G GKT +S+ +A  A 
Sbjct: 173 DVAGVDEAKAELTEIVDFLKKPERYTAIGA--RIPKGVLLVGPPGTGKTLLSKAVAGEAD 230

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 231 VPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 260


>gi|56418613|ref|YP_145931.1| ATP-dependent Clp protease ATPase [Geobacillus kaustophilus HTA426]
 gi|297528454|ref|YP_003669729.1| ATPase AAA [Geobacillus sp. C56-T3]
 gi|56378455|dbj|BAD74363.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
           HTA426]
 gi|297251706|gb|ADI25152.1| ATPase AAA-2 domain protein [Geobacillus sp. C56-T3]
          Length = 810

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 111/319 (34%), Gaps = 47/319 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 501 KLEEILHSRVVGQDEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +R LA          I+++++++ E            GYVG     Q+   +     ++V
Sbjct: 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVV 614

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G+   S  R V  +       S+   D    +  
Sbjct: 615 LLDEME----KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIIIMTSNVGADALKRNKY 670

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV------QKCYPELMRDESDRL 227
              +  D           + +   K        +I   +      +    +++R  +D L
Sbjct: 671 VGFNIQDGNQQYKDMKSKVMDELKKAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTL 730

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV-------SREGVQRDLLPLVE 280
           +    +    I +            +KI A       G         +    R    L++
Sbjct: 731 VK--RLKEQDIDLELTEAA-----IEKIAAEGFDPEYGARPLRRALQKHVEDRLSEELLK 783

Query: 281 GSSVSTKYGSINTDHILFI 299
           G+    +   ++     F+
Sbjct: 784 GTIAKGQKVVVDVKDGEFV 802



 Score = 38.8 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL K   + I+      L+ +    +K + I L+ TE +I+ +A  
Sbjct: 699 PEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKR----LKEQDIDLELTEAAIEKIAAE 754

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED-ISFSASD---LQEKTVVID 415
             +      + GAR L+  +++ +ED +S         + + VV+D
Sbjct: 755 GFD-----PEYGARPLRRALQKHVEDRLSEELLKGTIAKGQKVVVD 795


>gi|322824610|gb|EFZ29959.1| katanin-like protein, putative [Trypanosoma cruzi]
          Length = 926

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AKR+V  A+    RR  L   LRD   P+ +LL GP G GKT I+R +A  A
Sbjct: 606 DDIAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRA 663

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
              F+ +  +      ++G   E+++R L  VA+
Sbjct: 664 QCTFLNISASSLM-SKWMGDG-EKLVRCLFAVAV 695


>gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
 gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
          Length = 759

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQA 275


>gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
 gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM
           10542]
          Length = 684

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A    R +   L    + Q + A +     PK +LL GP G GKT ++R +A 
Sbjct: 163 DVAGADEAVEELREIQEFLSEPAKFQAVGAKI-----PKGVLLYGPPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFNQA 250


>gi|255087098|ref|XP_002505472.1| predicted protein [Micromonas sp. RCC299]
 gi|226520742|gb|ACO66730.1| predicted protein [Micromonas sp. RCC299]
          Length = 680

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  ++ +   DL  ++ P+  LLVGP G GKT +++  A  +
Sbjct: 180 KDVAGCDEAKAEIMEFV-DFLKKPKKYEDLGAKI-PRGALLVGPPGTGKTLLAKATAGES 237

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 238 GVPFLSISGSDFMEM-FVGVGPSRV-RDLFAQA 268


>gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 205 DVAGAEEAKTELKEIVEFLKDAERFNKIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 259

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG  F  +  ++F E+ +VG    ++ RDL   A   
Sbjct: 260 EAGVTFFSISASEFVEL-FVGTGAARV-RDLFAQAKKN 295


>gi|148244954|ref|YP_001219648.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326781|dbj|BAF61924.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 740

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + SEL   + GQ  A  +++ A++            + +    + L  GPTGVGKT I
Sbjct: 444 KNLESELKLGVFGQDRALDSLSTAIK-----LSRSGLAQVDKPIGSFLFAGPTGVGKTEI 498

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++LAR+ G   ++ +++++ E            GYVG +   ++ ++V+   +
Sbjct: 499 CKQLARIMGIKLLRFDMSEYGERHSVSKFIGSPPGYVGYDKGGLLTEVVNANPH 552


>gi|332251814|ref|XP_003275045.1| PREDICTED: fidgetin-like protein 1 isoform 1 [Nomascus leucogenys]
 gi|332251816|ref|XP_003275046.1| PREDICTED: fidgetin-like protein 1 isoform 2 [Nomascus leucogenys]
 gi|332251818|ref|XP_003275047.1| PREDICTED: fidgetin-like protein 1 isoform 3 [Nomascus leucogenys]
 gi|332251820|ref|XP_003275048.1| PREDICTED: fidgetin-like protein 1 isoform 4 [Nomascus leucogenys]
 gi|332251822|ref|XP_003275049.1| PREDICTED: fidgetin-like protein 1 isoform 5 [Nomascus leucogenys]
 gi|332251824|ref|XP_003275050.1| PREDICTED: fidgetin-like protein 1 isoform 6 [Nomascus leucogenys]
          Length = 674

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493


>gi|300176366|emb|CBK23677.2| hsp78 [Blastocystis hominis]
          Length = 655

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 19/116 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ +A R V+  +     R         +    + L +GPTGVGKT + +
Sbjct: 343 MEDVLSQRVIGQPEAVRKVSECI-----RISRAGLRTHDRPLGSFLFLGPTGVGKTELCK 397

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            L +      + F +++++++ E            GYVG      + + V      
Sbjct: 398 TLCKFLFKDESCFTRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVRRHPYQ 453


>gi|302697769|ref|XP_003038563.1| hypothetical protein SCHCODRAFT_73030 [Schizophyllum commune H4-8]
 gi|300112260|gb|EFJ03661.1| hypothetical protein SCHCODRAFT_73030 [Schizophyllum commune H4-8]
          Length = 595

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   ++   +  Q    L  ++ P+  +L GP G GKT +++  A  A
Sbjct: 105 KDVAGMDEAKVEIMEFVK-FLKEPQRFTKLGAKI-PRGAILSGPPGTGKTLLAKATAGEA 162

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             PF+ V  ++F E+ +VG    ++ RDL   A   
Sbjct: 163 SVPFLSVSGSEFVEM-FVGVGSARV-RDLFASAKKH 196


>gi|297203464|ref|ZP_06920861.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|297148417|gb|EDY60364.2| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 847

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 35/306 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+       +  A L     P  + L +GPTGVGKT ++
Sbjct: 538 LERHLHERVVGQDEAVRVVSDAV------LRSRAGLASPDRPIGSFLFLGPTGVGKTELA 591

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          ++++++++ E            GYVG      + ++V      +  
Sbjct: 592 RALAESLFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLL- 650

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV E+A  +    +L  L     T +             ++       +    + I
Sbjct: 651 -LLDEV-EKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAITRRGAGI 708

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                 G  +     L  L          +   + V   + +L  ++  ++ ++      
Sbjct: 709 GFGSQSGEEARREQILRPLRDHFRPEFLNRIDEVVV---FRQLTGEQLRQITELLLQSTR 765

Query: 237 SIQMVENYGIVFLDE-FDKIVARDSGNGIGV-------SREGVQRDLLPLVEGSSVSTKY 288
            +   +   + F D   D +  R      G         RE   +    L++G+      
Sbjct: 766 RLLRAQGVTVTFTDSAVDWLAERGYQPEYGARPLRRTIQREVDNQLSRLLLDGTITEGDT 825

Query: 289 GSINTD 294
            +++T+
Sbjct: 826 VTVDTE 831



 Score = 45.7 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V  + L     R I T+    L+   + L++ +G+ + FT+ ++D LA+ 
Sbjct: 733 PEFLNRIDEVVVFRQLTGEQLRQI-TEL---LLQSTRRLLRAQGVTVTFTDSAVDWLAER 788

Query: 374 AVNLNSTVGDIGARRLQTVMER----VLEDISFSASDLQEKTVVIDAE 417
                    + GAR L+  ++R     L  +    +  +  TV +D E
Sbjct: 789 GYQ-----PEYGARPLRRTIQREVDNQLSRLLLDGTITEGDTVTVDTE 831


>gi|291336465|gb|ADD96019.1| ATP dependent Clp protease ATP binding subunit ClpA [uncultured
           organism MedDCM-OCT-S04-C138]
          Length = 535

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68
           + +  +L R I GQ +A   V  A+R         A L   L P  + L  GPTGVGKT 
Sbjct: 240 KTLDDDLRRVIYGQDEAISRVVEAIR------VSRAGLGQPLRPIGVFLFSGPTGVGKTE 293

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           ++R++A   G  FI+ ++++++E   V R +  
Sbjct: 294 LARQIAETLGIEFIRFDMSEYSEPHTVSRLIGS 326


>gi|291166566|gb|EFE28612.1| ATP-dependent metalloprotease FtsH [Filifactor alocis ATCC 35896]
          Length = 666

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 24/203 (11%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   LR+  +   L A +     PK IL+VGP G GKT +S+ +A  AG PF  +  + F
Sbjct: 178 IVDFLRSPQKYWNLGARI-----PKGILMVGPPGTGKTYLSKAVAGEAGVPFYSISGSDF 232

Query: 90  TEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKTATS 145
            E+ +VG    ++ RDL +     A  I+     D V  +              G     
Sbjct: 233 VEM-FVGVGASRV-RDLFEQAKKTAPCIIFIDEIDAVGRKRGA-----------GLGGGH 279

Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205
           + RE    +L       +  +  +   +++  +   P     G  +   +        + 
Sbjct: 280 DEREQTLNQLLVEMDGFRVNESIIVMAATNRPDILDPALLRPGRFDRQVMVGS--PDVKG 337

Query: 206 KKIRMSVQKCYPELMRDESDRLI 228
           ++  + V      L  D   ++I
Sbjct: 338 REEILKVHSRKKPLAEDVDLKVI 360


>gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 611

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      L+   +   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 161 NDVAGADEEKEELQEIVEFLKYPKKFLDLGARI-----PKGVLLVGPPGTGKTLLAKAVA 215

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 216 GEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQAKKN 252


>gi|111021885|ref|YP_704857.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
 gi|110821415|gb|ABG96699.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
           jostii RHA1]
          Length = 807

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL R +IGQ DA RA+A A+     R+        +    + L +GPTGVGKT +
Sbjct: 500 RRLEDELHRRVIGQDDAVRAIARAV-----RRSRTGMSDPDRPVGSFLFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          +++++++F E   V R V
Sbjct: 555 AKALAATLFGDENKMLRLDMSEFGERHTVSRLV 587



 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 28/176 (15%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y ++ LDE +K         +   D G         V      L+  S++ +   S  +
Sbjct: 610 PYSVILLDEIEKAHPDVFNTLLQVLDDGRLTDGQGRTVDFKNTVLIMTSNLGSDIISSKS 669

Query: 294 DHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
             + F    A    +P            + PE   R    V  + L+      I      
Sbjct: 670 GALGFSTGDAEASEKPLRDRVMGRLRESMRPEFLNRIDEIVIFRKLDNEQLHRIT----D 725

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            L+   ++ ++++GI + F+E ++D +A+     +    + GAR L+  ++R ++D
Sbjct: 726 LLLDDSRKRLQSKGIEISFSEAAVDWIAE-----HGHQPEFGARPLRRSIQRAVDD 776


>gi|268555362|ref|XP_002635669.1| C. briggsae CBR-FIGL-1 protein [Caenorhabditis briggsae]
 gi|75005140|sp|Q60QD1|FIGL1_CAEBR RecName: Full=Fidgetin-like protein 1
 gi|187022331|emb|CAP38575.1| CBR-FIGL-1 protein [Caenorhabditis briggsae AF16]
          Length = 591

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G + AK+A+   +   ++R  +   LR    PK +LL GP G GKT I R +A  A 
Sbjct: 317 DVAGLEGAKKALKEIVVLPFQRPDIFTGLRAP--PKGVLLFGPPGTGKTMIGRCVASQAQ 374

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   +VG   E+++R L  VA
Sbjct: 375 ATFFNISASSLT-SKWVGEG-EKLVRALFSVA 404


>gi|33519653|ref|NP_878485.1| ATP-dependent protease, Hsp 100, part of novel multi-chaperone
           system with DnaK, DnaJ, and GrpE [Candidatus Blochmannia
           floridanus]
 gi|54035813|sp|Q7VQF3|CLPB_BLOFL RecName: Full=Chaperone protein ClpB
 gi|33517316|emb|CAD83701.1| ATP-dependent protease, Hsp 100, part of novel multi-chaperone
           system with DnaK, DnaJ, and GrpE [Candidatus Blochmannia
           floridanus]
          Length = 872

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L + +IGQ +A R ++ A+R      +  + L D   P  + + +GPTGVGKT + 
Sbjct: 564 METILHQLVIGQDEAVRVISNAIR------RSRSGLSDPKRPIGSFMFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + L++         +++++++F E   V +
Sbjct: 618 KALSQFLFDTDNAMVRIDMSEFMEKHSVSK 647


>gi|71747882|ref|XP_822996.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           brucei]
 gi|70832664|gb|EAN78168.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma brucei]
          Length = 657

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L+   +  +L   L     PK  LLVGP G GKT +++ +A+ 
Sbjct: 188 IRGCDEAKKELKEIVEFLKEPEKFHKLGGRL-----PKGALLVGPPGCGKTMLAKAIAKE 242

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A   F     ++F E+ +VG    ++ R+L   A            + +A        +D
Sbjct: 243 ADVSFFYSAGSEFDEM-FVGVGSRRV-RELFAAA------------KARAPSLIFIDEID 288

Query: 137 ALVGK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL GK   T  + +R    + L + +  D +  + V   ++   + D
Sbjct: 289 ALGGKRSGTDHAYSRMTLNQLLAEMDGFDSKDSVIVIAATNTPDSLD 335


>gi|319410164|emb|CBY90500.1| cell division protease FtsH [Neisseria meningitidis WUE 2594]
          Length = 637

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 143 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 195

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 196 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 246


>gi|297182165|gb|ADI18337.1| ATPases with chaperone activity, ATP-binding subunit [uncultured
           Rhodobacterales bacterium HF4000_03E16]
          Length = 891

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ  A +AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 580 MEEDLHRRVVGQNQAVKAVSNAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 633

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 634 KAVADFLFDDDNAMVRIDMSEFMEKHAVAR 663


>gi|254526296|ref|ZP_05138348.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537720|gb|EEE40173.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 617

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|219128649|ref|XP_002184520.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403970|gb|EEC43919.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 514

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK     + + L++  +  +L   L     P+ +LL GP G GKT +++ +A
Sbjct: 80  EDVKGVEEAKAELEEIVMYLKDPSKFTRLGGKL-----PRGLLLTGPPGTGKTLLAKAIA 134

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     ++F E+ YVG   ++I R+L + A          + +  A I  +E  
Sbjct: 135 GEADVPFFYSSGSQFEEV-YVGLGAKRI-RELFEAA----------KKKAPAIIFIDE-- 180

Query: 135 LDALVGK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +DA+ G       S  +    + L   +  D+   I V   ++ + + D
Sbjct: 181 IDAVGGTRRLKDQSALKMTLNELLVQLDGFDENNGIIVIGATNFMESLD 229


>gi|172041381|ref|YP_001801095.1| cell division protein [Corynebacterium urealyticum DSM 7109]
 gi|171852685|emb|CAQ05661.1| cell division protein [Corynebacterium urealyticum DSM 7109]
          Length = 837

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A   +      L N  + ++L A +     P+ +LL GP G GKT ++R +A
Sbjct: 171 DDVAGADEAVEELDEIRDFLSNPGKYEKLGAKI-----PRGVLLYGPPGTGKTLLARAVA 225

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 GESGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 259


>gi|219847263|ref|YP_002461696.1| ATP-dependent chaperone ClpB [Chloroflexus aggregans DSM 9485]
 gi|219541522|gb|ACL23260.1| ATP-dependent chaperone ClpB [Chloroflexus aggregans DSM 9485]
          Length = 861

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 564 MEERLHQRVVGQDEAVTAVANAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 618 RALAEFLFDDEQAMVRIDMSEYMEKHSVAR 647


>gi|330720477|gb|EGG98779.1| Cell division protein FtsH [gamma proteobacterium IMCC2047]
          Length = 631

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 13  VSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V+     + G ++AK     +   LR+  + Q+L   +     P+ +L+ G  G GKT +
Sbjct: 136 VNTTFDDVAGVEEAKEEVQELVEFLRDPGKFQRLGGHI-----PRGVLMAGSPGTGKTLL 190

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           ++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 191 AKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 245


>gi|329114582|ref|ZP_08243341.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
 gi|326696062|gb|EGE47744.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
          Length = 890

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 585 MEDELRKSVVGQEQALKAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 638

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         +++++++F E   V R
Sbjct: 639 KALARFLFDDDKALLRIDMSEFMEKHAVAR 668


>gi|325689367|gb|EGD31373.1| cell division protein FtsH [Streptococcus sanguinis SK115]
          Length = 659

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|261332846|emb|CBH15841.1| metallo-peptidase, Clan MA(E) Family M41 [Trypanosoma brucei
           gambiense DAL972]
          Length = 657

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L+   +  +L   L     PK  LLVGP G GKT +++ +A+ 
Sbjct: 188 IRGCDEAKKELKEIVEFLKEPEKFHKLGGRL-----PKGALLVGPPGCGKTMLAKAIAKE 242

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           A   F     ++F E+ +VG    ++ R+L   A            + +A        +D
Sbjct: 243 ADVSFFYSAGSEFDEM-FVGVGSRRV-RELFAAA------------KARAPSLIFIDEID 288

Query: 137 ALVGK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL GK   T  + +R    + L + +  D +  + V   ++   + D
Sbjct: 289 ALGGKRSGTDHAYSRMTLNQLLAEMDGFDSKDSVIVIAATNTPDSLD 335


>gi|260824930|ref|XP_002607420.1| hypothetical protein BRAFLDRAFT_276636 [Branchiostoma floridae]
 gi|229292767|gb|EEN63430.1| hypothetical protein BRAFLDRAFT_276636 [Branchiostoma floridae]
          Length = 643

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  Q   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 153 DVAGCEEAKLEIMEFV-NFLKNPQQYIDLGAKI-PKGAILSGPPGTGKTLLAKATAGEAN 210

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            PFI V  ++F E+ +VG     V  +       A  I+     D V  +
Sbjct: 211 VPFITVNGSEFLEM-FVGVGPARVRDMFSMARKHAPCILFIDEIDAVGRK 259


>gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
 gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
          Length = 966

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  AG PF     T+F E+ +VG    +I R+L D A
Sbjct: 399 RIPAGVLLCGPPGTGKTLLARCVAGEAGVPFFSCAGTEFMEM-FVGVGAARI-RNLFDQA 456


>gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 696

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 13  VSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                  + G  +AK+    +   L++  +  +L   +     PK  LLVGP G GKT +
Sbjct: 185 KKTTFNDVAGCDEAKQDLQELVEFLKDPKKYDKLGGRI-----PKGALLVGPPGTGKTLL 239

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV 122
           +R +A  AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 240 ARAVAGEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFETGKKNAPCILFIDEIDAV 294


>gi|239907210|ref|YP_002953951.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
 gi|239797076|dbj|BAH76065.1| cell division protein FtsH [Desulfovibrio magneticus RS-1]
          Length = 675

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRW--RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   ++     +R           +PK +LLVG  G GKT ++R +A 
Sbjct: 153 EDVAGVDEAKEELTEVVQFLSDPKRFTRLGG----RIPKGVLLVGSPGTGKTLLARAVAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +       A  ++     D V
Sbjct: 209 EAGVPFFSISGSDFVEM-FVGVGAARVRDLFLQGKKNAPCLIFIDEIDAV 257


>gi|255549872|ref|XP_002515987.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223544892|gb|EEF46407.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 884

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 444 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 495

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 496 GASRVRSLYQEAKENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVC 548

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 549 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIYIPKPGLIGRMEILKVHARKKPMA 608

Query: 214 K 214
            
Sbjct: 609 D 609


>gi|212634695|ref|YP_002311220.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shewanella
           piezotolerans WP3]
 gi|212556179|gb|ACJ28633.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella
           piezotolerans WP3]
          Length = 752

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   ++ A+     R        +     + L  GPTGVGKT +
Sbjct: 450 KNLERNLKMVVFGQDMAIEGLSSAI-----RLSRSGLGGENKPVGSFLFAGPTGVGKTEV 504

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+  G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 TSQLAKCLGLSLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 559


>gi|237844257|ref|XP_002371426.1| clpB protein, putative [Toxoplasma gondii ME49]
 gi|211969090|gb|EEB04286.1| clpB protein, putative [Toxoplasma gondii ME49]
          Length = 970

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+       +  A L  E MP  + L +GPTGVGKT +++ LA
Sbjct: 583 LHSRVIGQDDAVKAVADAM------VRARAGLSREGMPVGSFLFLGPTGVGKTELAKALA 636

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                     I++++++F+E   V R +      +   A   + E+ R  
Sbjct: 637 MEMFHSEKNLIRIDMSEFSEAHSVSRLIGSPPGYVGHDAGGQLTEAVRRR 686


>gi|154488139|ref|ZP_02029256.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis
           L2-32]
 gi|154083612|gb|EDN82657.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis
           L2-32]
          Length = 909

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 590 MEEYLGKRVIGQKEAIQAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 644

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 645 ALADFLFDDEKAMVRIDMSEYMEKASVSR 673


>gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 759

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQA 275


>gi|313679327|ref|YP_004057066.1| ATP-dependent chaperone clpb [Oceanithermus profundus DSM 14977]
 gi|313152042|gb|ADR35893.1| ATP-dependent chaperone ClpB [Oceanithermus profundus DSM 14977]
          Length = 855

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A ++VA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 553 LEDELHKRVVGQDEAIQSVADAIR------RARAGLKDPNRPIGSFMFLGPTGVGKTELA 606

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++T++ E   V R
Sbjct: 607 KTLAETLFDTEEAMIRIDMTEYMEKHSVAR 636


>gi|297288307|ref|XP_001083559.2| PREDICTED: fidgetin-like protein 1-like isoform 1 [Macaca mulatta]
 gi|297288309|ref|XP_002803318.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Macaca mulatta]
 gi|297288311|ref|XP_002803319.1| PREDICTED: fidgetin-like protein 1-like isoform 3 [Macaca mulatta]
 gi|297288313|ref|XP_002803320.1| PREDICTED: fidgetin-like protein 1-like isoform 4 [Macaca mulatta]
 gi|297288315|ref|XP_002803321.1| PREDICTED: fidgetin-like protein 1-like isoform 5 [Macaca mulatta]
          Length = 674

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493



 Score = 38.0 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTTSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLIL 338
               I   A    V R    LPE   R  + ++L S     L++ +   ++
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKHIVINLMSKEQCCLSEEEIEQVV 597


>gi|261417579|ref|YP_003251261.1| ATPase AAA [Geobacillus sp. Y412MC61]
 gi|319765237|ref|YP_004130738.1| ATPase AAA [Geobacillus sp. Y412MC52]
 gi|261374036|gb|ACX76779.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC61]
 gi|317110103|gb|ADU92595.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC52]
          Length = 810

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 111/319 (34%), Gaps = 47/319 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 501 KLEEILHSRVVGQDEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +R LA          I+++++++ E            GYVG     Q+   +     ++V
Sbjct: 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVV 614

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G+   S  R V  +       S+   D    +  
Sbjct: 615 LLDEME----KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIIIMTSNVGADALKRNKY 670

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV------QKCYPELMRDESDRL 227
              +  D           + +   K        +I   +      +    +++R  +D L
Sbjct: 671 VGFNIQDGNQQYKDMKSKVMDELKKAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTL 730

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV-------SREGVQRDLLPLVE 280
           +    +    I +            +KI A       G         +    R    L++
Sbjct: 731 VK--RLKEQDIDLELTEAA-----IEKIAAEGFDPEYGARPLRRALQKHVEDRLSEELLK 783

Query: 281 GSSVSTKYGSINTDHILFI 299
           G+    +   ++     F+
Sbjct: 784 GTIAKGQKVVVDVKDGEFV 802



 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL K   + I+      L+ +    +K + I L+ TE +I+ +A  
Sbjct: 699 PEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKR----LKEQDIDLELTEAAIEKIAAE 754

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED-ISFSASD---LQEKTVVID 415
             +      + GAR L+  +++ +ED +S         + + VV+D
Sbjct: 755 GFD-----PEYGARPLRRALQKHVEDRLSEELLKGTIAKGQKVVVD 795


>gi|89901531|ref|YP_524002.1| ATPase [Rhodoferax ferrireducens T118]
 gi|89346268|gb|ABD70471.1| ATPase AAA-2 [Rhodoferax ferrireducens T118]
          Length = 775

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 30/263 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  
Sbjct: 456 KTLERDLKNVVFGQDKALDMLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEA 510

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA + G   I+ +++++ E            GYVG +   ++ + +    + V    
Sbjct: 511 AKQLAYIMGIDLIRFDMSEYMEQHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHCVL--L 568

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A       +L  +   T T N          +G  +D    I V  T++    
Sbjct: 569 LDEI-EKAHPAIFNVLLQVMDHGTLTDN----------NGRKADFRNVIIVMTTNAGAET 617

Query: 179 FDIPGGASVGILNLSELFSKV-MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
            +        +    +  + +      + + R+     +  L      R++D   +  ++
Sbjct: 618 MNKTVMGFTNVREAGDEMADIKRLFTPEFRNRLDAVVSFKALDEIVILRVVDKFLLQLEA 677

Query: 238 IQMVENYGIVFLDEFDKIVARDS 260
               +   + F D+  K +A+  
Sbjct: 678 QLADKKVDVTFTDKLRKHLAKKG 700


>gi|78185050|ref|YP_377485.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169344|gb|ABB26441.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus sp. CC9902]
          Length = 629

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 176 DVAGVDEAKDELTEIVDFLKTPERYAEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 230

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 231 EAEVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 263


>gi|84622886|ref|YP_450258.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366826|dbj|BAE67984.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 861

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHAVAR 645


>gi|46124877|ref|XP_386992.1| hypothetical protein FG06816.1 [Gibberella zeae PH-1]
          Length = 885

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 93/267 (34%), Gaps = 31/267 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 403 DVAGLEEAKTEIMEFV-SFLKQPEKFEKLGAKI-PRGAILAGPPGTGKTLLAKATAGESG 460

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS------- 127
            PF  V  ++F E+ +VG     V  +  +    A  I+     D + R +         
Sbjct: 461 VPFFSVSGSEFVEM-FVGVGPSRVRDLFAEGRKNAPCIIFIDEIDAIGRARQESGKGFGG 519

Query: 128 ----INAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    +IL  + G          A +N  ++  K L      D+ I I+       
Sbjct: 520 NDEREATLNQILTEMDGFNTREQVVVLAGTNRADMLDKALMRPGRFDRHIFIDRPTMKGR 579

Query: 176 ISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDM 230
              F +       +     L    + +        I   V +      R  +D  ++   
Sbjct: 580 QEIFKVYLNKIVTNEDQEYLVGRLATLTPGFSGADIANVVNEAALIAARGNADDVKMDHF 639

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVA 257
           +      I  +E   +V   E  K VA
Sbjct: 640 ERAIERVIGGLERKSLVLKPEEKKTVA 666


>gi|332521364|ref|ZP_08397820.1| ATP-dependent metalloprotease FtsH [Lacinutrix algicola 5H-3-7-4]
 gi|332043092|gb|EGI79290.1| ATP-dependent metalloprotease FtsH [Lacinutrix algicola 5H-3-7-4]
          Length = 648

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 97/283 (34%), Gaps = 48/283 (16%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G + AK  V      L+N  +   L   +     PK  LLVG  G GKT +
Sbjct: 192 VKTTFKDVAGLEGAKEEVQEIVDFLKNPEKYTSLGGKI-----PKGALLVGQPGTGKTLL 246

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQ 125
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A     +I+     D +   
Sbjct: 247 AKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQAKEKSPSIIFIDEIDAIGRA 304

Query: 126 ASINA-----EER------ILDALVGKT--------ATSNTREVFRKKLRDGEISDKEID 166
              NA     +ER      +L  + G          A +N  ++  K L      D++I 
Sbjct: 305 RGKNAMSGSNDERENTLNQLLTEMDGFGTNTNVIVLAATNRADILDKALMRAGRFDRQIF 364

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
           +++ D       F++          L   F      G       +V      +      +
Sbjct: 365 VDLPDVRERKEIFEVHLRPLKKAEGLDIEFLSKQTPGFSGADIANVCNEAALIAARNGKK 424

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269
            +D                  FLD  D+IV         ++ E
Sbjct: 425 AVDKQD---------------FLDAVDRIVGGLEKKNKIITPE 452


>gi|330817193|ref|YP_004360898.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           gladioli BSR3]
 gi|327369586|gb|AEA60942.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           gladioli BSR3]
          Length = 865

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVIGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|320590088|gb|EFX02533.1| mitochondrial inner membrane aaa protease [Grosmannia clavigera
           kw1407]
          Length = 958

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 465 DVAGMDEAKLEIMEFV-SFLKQPERFQRLGAKI-PRGAILAGPPGTGKTLLAKATAGESG 522

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 523 VPFFSVSGSEFVEM-FVGVGASRV-RDLFATA 552


>gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300073516|gb|ADJ62915.1| ATP-dependent protease (ATP-binding specificity subunit) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 767

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A  A++ A++            + +    + L  GPTGVGKT +++
Sbjct: 455 IDRDLKNVVFGQDPAIEALSSAIK-----MARAGLGKTDKPIGSFLFSGPTGVGKTEVAK 509

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA + G   ++ +++++ E            GYVG +   ++ + V+   +
Sbjct: 510 QLAFILGIELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVNKKPH 561


>gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 371

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 12/108 (11%)

Query: 8   SPREIVSELDR-----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
           +P++++    +      I+GQ++AK+   I +    +  + P +L  +  PKN+L  GP 
Sbjct: 109 TPKKVIRTQFKKAKFSEIVGQEEAKKKCRIIM----KYLEDP-ELFGDWAPKNVLFYGPP 163

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G GKT ++R LA    + FI V+  +      VG +  ++IR+L   A
Sbjct: 164 GTGKTLMARALATETNSSFILVKAPELIGEH-VG-DASKMIRELYQKA 209


>gi|162147426|ref|YP_001601887.1| chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786003|emb|CAP55585.1| Chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
          Length = 847

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R ++GQ+ A +AVA A+R      +  A L+D   P  + L +GPTGVGKT + 
Sbjct: 566 MEDELRRLVVGQEPALKAVANAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LAR         ++V +++F E            GYVG     +   L + A     +
Sbjct: 620 KALARFLFDDEKALLRVNMSEFMEKHAVSRLIGAPPGYVGYEEGGV---LTEAARRRPYQ 676

Query: 117 SRRDEVREQASINAEERILDAL 138
               +  E+A  +    +L  L
Sbjct: 677 VILFDEVEKAHEDVFNVLLQVL 698


>gi|156849031|ref|XP_001647396.1| hypothetical protein Kpol_1018p70 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118082|gb|EDO19538.1| hypothetical protein Kpol_1018p70 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 797

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A  AV+ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 485 MEKTLQERVVGQDEAISAVSDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 539

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +   + ++++F E   V R +      ++  +   + E+ R +
Sbjct: 540 ALAEFLFDNESNITRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 592


>gi|150003220|ref|YP_001297964.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
 gi|149931644|gb|ABR38342.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Bacteroides
           vulgatus ATCC 8482]
          Length = 742

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GY+G     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|145355383|ref|XP_001421942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582181|gb|ABP00236.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 636

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   +   + +           +PK +LLVGP G GKT +++ +A  A
Sbjct: 205 DDVKGVDEAKAELVEIVE--YLKAPEKFTKLGGKLPKGLLLVGPPGTGKTMLAKAVAGEA 262

Query: 78  GAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
           G PF     ++F E+ +VG   R V  + +     A  IV     D V
Sbjct: 263 GVPFFYSSGSEFEEM-FVGVGARRVRDLFKAAKQNAPCIVFIDEIDAV 309


>gi|50309407|ref|XP_454711.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643846|emb|CAG99798.1| KLLA0E16897p [Kluyveromyces lactis]
          Length = 825

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++ LA 
Sbjct: 512 LRERVVGQDEAIDAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTKALAE 566

Query: 76  LA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                 +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 567 FLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 615


>gi|85859372|ref|YP_461574.1| cell division protein [Syntrophus aciditrophicus SB]
 gi|85722463|gb|ABC77406.1| cell division protein [Syntrophus aciditrophicus SB]
          Length = 611

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  +  +L   +     PK +LLVGP G GKT +++ +A 
Sbjct: 154 DVAGIDEAKAELEEVIEFLKDPKKFTRLGGRI-----PKGLLLVGPPGTGKTLLAKAIAG 208

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF+ +  + F E+ +VG    ++ RDL   A   
Sbjct: 209 EADVPFLTISGSDFVEM-FVGVGASRV-RDLFTQAKKN 244


>gi|71029588|ref|XP_764437.1| ATP-dependent Clp protease ATP-binding subunit [Theileria parva
           strain Muguga]
 gi|68351391|gb|EAN32154.1| ATP-dependent Clp protease ATP-binding subunit, putative [Theileria
           parva]
          Length = 900

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 104/281 (37%), Gaps = 31/281 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L + +IGQ++A + V  A+R      +   ++++   P  + L  GP GVGK+ 
Sbjct: 565 RNMEEDLHKMVIGQEEAVKNVCKAIR------RAKTNIKNPNRPIGSFLFCGPPGVGKSE 618

Query: 69  ISRRLAR--LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVR 115
           ++R L +   A    I+++++++TE            GY G +       L +   +   
Sbjct: 619 VARALTKYLFAKENLIRIDMSEYTEPHSISRILGSPPGYKGHD---TGGQLTEKVKSNPY 675

Query: 116 ESRRDEVREQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +  E+A  +    +L  L     T + N    F+  +     +     I+ +   
Sbjct: 676 SVVMFDEIEKAHHDVLNILLQILEDGKLTDSKNQTISFKNTIIIMTSNTGSNVIQRSSKG 735

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDE----SDRL 227
                F +    S   L +  L  + + S    ++   +     +  L+  E    +  +
Sbjct: 736 VHTFGFTVDSDESSDYLKIKALVMEELKSHFLPELINRIDDVILFKPLLESELKEIAKLM 795

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           ++  T    S  ++      F D   K+   D      + R
Sbjct: 796 LNDLTARAHSAGILIEISEKFADYILKLPRDDKSGARPLRR 836


>gi|308234744|ref|ZP_07665481.1| ATP-dependent chaperone protein ClpB [Gardnerella vaginalis ATCC
           14018]
          Length = 422

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ +A RA+A A+     R+             + L +GPTGVGKT +++
Sbjct: 126 MEKELSKRVVGQSEAIRAIADAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 180

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 181 ALADFLFDDERAMVRIDMSEYMEKASVSR 209


>gi|294155986|ref|YP_003560370.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
 gi|291600426|gb|ADE19922.1| cell division protein FtsH [Mycoplasma crocodyli MP145]
          Length = 669

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++A    + +   L+N  +      D     MPK ILL GP G GKT +++  A 
Sbjct: 199 DIAGNKEAIEEIKEIVDYLKNPKKY-----DDSGARMPKGILLGGPPGTGKTLLAKATAG 253

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
            A  PF  +  + F E+ YVG   +++ + + +   N       DE+  
Sbjct: 254 EANVPFYFISASNFVEM-YVGLGAKRVRQVITEARKNSPAIIFIDELDA 301


>gi|224077716|ref|XP_002305376.1| predicted protein [Populus trichocarpa]
 gi|222848340|gb|EEE85887.1| predicted protein [Populus trichocarpa]
          Length = 967

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 25/226 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ  A +AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 639 LEDELHKRVVGQDPAVKAVAEAI------QRSRAGLSDPHRPIASFMFMGPTGVGKTELA 692

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          ++++++++ E   V R V      +       + E+ R   R  A 
Sbjct: 693 KALASYMFNTEEALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTETVRR--RPYAV 750

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I  +E        + A S+   +F + L DG ++D +        +   +N  I   ++V
Sbjct: 751 ILFDEI-------EKAHSDVFNIFLQVLDDGRVTDSQ------GRTVSFTNTVIIMTSNV 797

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
           G   + +    +      + I+  V      + R E    +D   V
Sbjct: 798 GSQYILDTDDNLPKEVANETIKRRVMDAARSVFRPEFMNRVDEYIV 843


>gi|221481384|gb|EEE19774.1| ClpB protein, putative [Toxoplasma gondii GT1]
 gi|221502016|gb|EEE27766.1| ClpB protein, putative [Toxoplasma gondii VEG]
          Length = 970

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ DA +AVA A+       +  A L  E MP  + L +GPTGVGKT +++ LA
Sbjct: 583 LHSRVIGQDDAVKAVADAM------VRARAGLSREGMPVGSFLFLGPTGVGKTELAKALA 636

Query: 75  RLAGA---PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                     I++++++F+E   V R +      +   A   + E+ R  
Sbjct: 637 MEMFHSEKNLIRIDMSEFSEAHSVSRLIGSPPGYVGHDAGGQLTEAVRRR 686


>gi|149200008|ref|ZP_01877034.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
 gi|149136881|gb|EDM25308.1| probable cell division protein FtsH [Lentisphaera araneosa
           HTCC2155]
          Length = 693

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A+  V      L++  + + L   L     PK  L+VGP G GKT ++R +A 
Sbjct: 186 DVAGVSEAREEVEEIVDFLKDPAKYRNLGGRL-----PKGCLMVGPPGTGKTLLARAIAG 240

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            AG PF  +  + F E+ +VG    ++ RDL + A    
Sbjct: 241 EAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFEQAKKHQ 277


>gi|307132185|ref|YP_003884201.1| ClpB protein [Dickeya dadantii 3937]
 gi|306529714|gb|ADM99644.1| ClpB protein [Dickeya dadantii 3937]
          Length = 857

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|283850416|ref|ZP_06367705.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. FW1012B]
 gi|283574442|gb|EFC22413.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio
           sp. FW1012B]
          Length = 762

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRL 73
           EL   I GQ +A  A++ A+       +  A L +   P    LL GPTGVGKT ++++L
Sbjct: 450 ELKGLIYGQDEAVEAISKAI------LRSRAGLANAGKPTGSFLLAGPTGVGKTEMAKQL 503

Query: 74  ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           A + G  F++ +++++ E            GYVG     ++ D +      
Sbjct: 504 AAVLGINFVRFDMSEYMEKHAVARLIGSPPGYVGFEQGGLLTDAIRKHPYS 554


>gi|149178953|ref|ZP_01857530.1| cell division protein FtsH [Planctomyces maris DSM 8797]
 gi|148842227|gb|EDL56613.1| cell division protein FtsH [Planctomyces maris DSM 8797]
          Length = 685

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A    R V   LR   + Q L   +     PK +LLVGP G GKT +++ +A
Sbjct: 200 NDVAGIDEAVEELREVVEFLRTPAKYQALGGRI-----PKGVLLVGPPGTGKTMLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RD+   A
Sbjct: 255 GEAGVPFYGLSGSDFVEM-FVGVGAARV-RDMFQQA 288


>gi|328542274|ref|YP_004302383.1| ATPase AAA-2 domain protein [polymorphum gilvum SL003B-26A1]
 gi|326412023|gb|ADZ69086.1| ATPase AAA-2 domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 968

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   +IGQ++A RAVA A+     R                L +GPTGVGKT ++
Sbjct: 612 KLEEKLHERVIGQEEAIRAVADAV-----RLARAGLREGRGPTATFLFLGPTGVGKTELA 666

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +        I+++++++ E   V R V
Sbjct: 667 KTLAEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 676

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 13  VSELDRYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
                  + G  +AK+    +   L++  +  +L   +     PK  LLVGP G GKT +
Sbjct: 165 KKTTFNDVAGCDEAKQDLQELVEFLKDPKKYDKLGGRI-----PKGALLVGPPGTGKTLL 219

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV 122
           +R +A  AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 220 ARAVAGEAGVPFFSMSGSDFVEM-FVGVGASRV-RDLFETGKKNAPCILFIDEIDAV 274


>gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
 gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
          Length = 695

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|269468371|gb|EEZ80036.1| ATPase with chaperone activity, ATP-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 613

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + SEL   + GQ DA  +++ +++            + +    + L  GPTGVGKT I
Sbjct: 444 KNLESELKLGVFGQNDAVESLSTSIK-----LSRSGLAQVDKPMGSFLFAGPTGVGKTEI 498

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++LAR+ G   ++ +++++ E            GYVG +   ++ + V+    
Sbjct: 499 CKQLARIMGVKLLRFDMSEYMERHSISKLIGSPPGYVGYDEGGLLTEAVNSNPY 552


>gi|256081179|ref|XP_002576850.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni]
 gi|238662136|emb|CAZ33087.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni]
          Length = 602

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      LRN  +  Q+ A L     PK +LLVGP GVGKT +++ ++ 
Sbjct: 167 DVQGCDEVKKELVDVVEFLRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSG 221

Query: 76  LAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
            A  PF+    + F E  +G     + Q+       +  +V     D V
Sbjct: 222 EAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV 270


>gi|254480727|ref|ZP_05093974.1| ATP-dependent Clp protease ATP-binding subunit ClpA [marine gamma
           proteobacterium HTCC2148]
 gi|214039310|gb|EEB79970.1| ATP-dependent Clp protease ATP-binding subunit ClpA [marine gamma
           proteobacterium HTCC2148]
          Length = 761

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +++   L   + GQ  A  ++A +++              +    + LL GPTGVGKT
Sbjct: 452 TLKKLEQNLQMVVFGQDRAISSLATSIK-----LARAGLKSSDKPIGSFLLAGPTGVGKT 506

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++R+LA   G   I+ +++++ E            GYVG +   ++ D V    +
Sbjct: 507 EVTRQLAMQLGLELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVTKHPH 562


>gi|163750160|ref|ZP_02157403.1| clpB protein [Shewanella benthica KT99]
 gi|161330217|gb|EDQ01199.1| clpB protein [Shewanella benthica KT99]
          Length = 857

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   +IGQ +A  AV+ A+     R+        E    + L +GPTGVGKT + 
Sbjct: 561 QMEKALHESVIGQNEAVDAVSNAI-----RRSRAGLADPERPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+      A  +++++++F E   V R
Sbjct: 616 KSLAKFLFDTEAAMVRIDMSEFMEKHSVAR 645


>gi|147676618|ref|YP_001210833.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146272715|dbj|BAF58464.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 810

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 502 KMEEVLHQRVVGQDEAIRAVSRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA +        ++++++++ E   V R V
Sbjct: 556 ARALAEVLFGSEDAMVRIDMSEYMEKFAVSRLV 588


>gi|311030020|ref|ZP_07708110.1| ATPase AAA-2 domain protein [Bacillus sp. m3-13]
          Length = 710

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 36/264 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L++ +IGQ++A   +  A+     R+      R E      L VGPTGVGKT +
Sbjct: 412 KNLATNLNQKVIGQEEAVNKITKAI-----RRSRAGLKRKERPIGAFLFVGPTGVGKTEL 466

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA         +I+ +++++ E            GYVG     Q+   +     +I+
Sbjct: 467 TKSLAEELFGTKDAYIRFDMSEYMEKHAVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSII 526

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRK-----KLRDGEISDKEIDIE 168
                +    +A  +     L  +  G+   S  R V  K        +  + DK+I + 
Sbjct: 527 LLDEME----KAHPDVLHLFLQVMEDGRLTDSQGRTVSFKDTVIIMTSNAGVMDKKISVG 582

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR------MSVQKCYPELMRD 222
               +   +   I   ++         F  ++   + +K        + + +    L ++
Sbjct: 583 FEKQNLPQTGSVIESLSNYFKPEFLNRFDSIIEFSQLQKDHLLAIVDIMIDELAEMLRQE 642

Query: 223 ESDRLIDMDTVHRDSIQMVENYGI 246
              +LI  D      I++  N   
Sbjct: 643 RDCKLIISDAAKEKLIELGYNPAF 666


>gi|260549974|ref|ZP_05824189.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
 gi|260406966|gb|EEX00444.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
          Length = 859

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|302521030|ref|ZP_07273372.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|318061546|ref|ZP_07980267.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actG]
 gi|318076619|ref|ZP_07983951.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actF]
 gi|333025279|ref|ZP_08453343.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
 gi|302429925|gb|EFL01741.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|332745131|gb|EGJ75572.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
          Length = 841

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT ++
Sbjct: 507 MEDELHKRVIGQEDAVKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELA 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|169633163|ref|YP_001706899.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii SDF]
 gi|169151955|emb|CAP00815.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii]
          Length = 859

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|169796605|ref|YP_001714398.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii AYE]
 gi|184157485|ref|YP_001845824.1| ATPase [Acinetobacter baumannii ACICU]
 gi|213156282|ref|YP_002318702.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB0057]
 gi|215484066|ref|YP_002326291.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB307-0294]
 gi|239503505|ref|ZP_04662815.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB900]
 gi|260557553|ref|ZP_05829768.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii ATCC 19606]
 gi|301346300|ref|ZP_07227041.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB056]
 gi|301510716|ref|ZP_07235953.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB058]
 gi|301597427|ref|ZP_07242435.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB059]
 gi|332853545|ref|ZP_08434809.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013150]
 gi|332868410|ref|ZP_08438141.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013113]
 gi|332872452|ref|ZP_08440423.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6014059]
 gi|169149532|emb|CAM87421.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii AYE]
 gi|183209079|gb|ACC56477.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|193076896|gb|ABO11616.2| ATP-dependent protease Hsp 100 [Acinetobacter baumannii ATCC 17978]
 gi|213055442|gb|ACJ40344.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB0057]
 gi|213987437|gb|ACJ57736.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB307-0294]
 gi|260409179|gb|EEX02482.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii ATCC 19606]
 gi|322507800|gb|ADX03254.1| clpB [Acinetobacter baumannii 1656-2]
 gi|323517400|gb|ADX91781.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728578|gb|EGJ59950.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013150]
 gi|332733409|gb|EGJ64592.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013113]
 gi|332739338|gb|EGJ70194.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6014059]
          Length = 859

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|149038453|gb|EDL92813.1| AFG3(ATPase family gene 3)-like 1 (yeast) (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 663

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + N  +  +   DL  ++ PK  +L GP G GKT +++  A  A 
Sbjct: 175 DVAGCEEAKLEIMEFV-NFLKNPKQYQDLGAKI-PKGAMLTGPPGTGKTLLAKATAGEAK 232

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PFI V  ++F E+ +VG     V  +       A  I+     D +  +       R  
Sbjct: 233 VPFITVNGSEFLEM-FVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRK-------RGR 284

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181
             L G++   NT     + L + +  +   ++ V   ++     D 
Sbjct: 285 GHLGGQSEQENTLN---QMLVEMDGFNSTTNVVVLAGTNRPDILDP 327


>gi|329948202|ref|ZP_08295074.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328522935|gb|EGF50040.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 692

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASRV-RDLFDQA 293


>gi|294776010|ref|ZP_06741506.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
 gi|294450148|gb|EFG18652.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA
           [Bacteroides vulgatus PC510]
          Length = 742

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLV 59
           MK   N +   +   +   I GQ++A   V  A+      Q   A L DE  P  ++L V
Sbjct: 435 MKEEDNATLETLHERISAKIYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFV 488

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT +++ LA   G    + +++++TE            GY+G     ++ D + 
Sbjct: 489 GPTGVGKTEVAKVLASELGIALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIR 548

Query: 109 VAINI 113
              N 
Sbjct: 549 KTPNC 553


>gi|251782262|ref|YP_002996564.1| ATP-dependentprotease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390891|dbj|BAH81350.1| ATP-dependentprotease ATP-binding subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 699

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEISNRLKGHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDLFGSKEAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|212715374|ref|ZP_03323502.1| hypothetical protein BIFCAT_00269 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661680|gb|EEB22255.1| hypothetical protein BIFCAT_00269 [Bifidobacterium catenulatum DSM
           16992]
          Length = 905

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 596 MEDYLGKRVIGQKEAIQAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 650

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 651 ALADFLFDDEKAMVRIDMSEYMEKASVSR 679


>gi|167043571|gb|ABZ08266.1| putative peptidase family M41 [uncultured marine microorganism
           HF4000_APKG2K17]
          Length = 611

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 6   NFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62
              P E+    D  + G ++AK   R     L++  R ++L   +     PK +L+ G  
Sbjct: 149 KMEPDEMKVTFDD-VAGIEEAKDDLRETVEFLKDPARFRKLGGRI-----PKGMLMSGSP 202

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRR 119
           G GKT +++ +A  A  PF  +  + F E+ +VG     V  +       A  I+     
Sbjct: 203 GTGKTLLAKAVAGEAEVPFFSMSGSDFVEM-FVGVGASRVRDMFEQGRQNAPCIIFIDEI 261

Query: 120 DEV 122
           D V
Sbjct: 262 DAV 264


>gi|168186763|ref|ZP_02621398.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
 gi|169295342|gb|EDS77475.1| putative Cell division protease FtsH homolog [Clostridium botulinum
           C str. Eklund]
          Length = 583

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 35/273 (12%)

Query: 10  REIV--SELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +EI         + G  +AK   + +   L+N  +     A +     P+ ++L G  G 
Sbjct: 140 KEIENTKFTFENVAGNIEAKESIKDIVDFLKNPEKYNSYGAKM-----PRGLILYGEPGT 194

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-------S 117
           GKT +++ +A  A  PF  +  + F +I YVG    +I R L   A +  +         
Sbjct: 195 GKTLLAKAVAGEANVPFYAMSGSDFVQI-YVGVGASRI-RQLFKKAGSHGKAVIFIDEID 252

Query: 118 RRDEVREQASINAEER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDK 163
              + R  +  +++ER      +L  + G   T        +N  ++    L      D+
Sbjct: 253 AIGKKRTNSPSSSDERDQTLNALLTEMSGFKETDGIVVIAATNRLDMLDSALLRPGRFDR 312

Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223
            I++ + D ++     ++            + ++K        K+   V +      +DE
Sbjct: 313 HIEVSLPDITAREKILNLYLKDKPTNNVDIKSWAKKTSMFSGAKLEHLVNEAAILACKDE 372

Query: 224 SDRLIDMDTVHRDSIQMV--ENYGIVFLDEFDK 254
           ++ + D+      SI +   E      +   DK
Sbjct: 373 NEYIEDIHLHKAFSIVLAGYEKQDRAHIRNLDK 405


>gi|126641234|ref|YP_001084218.1| ATP-dependent protease Hsp 100 [Acinetobacter baumannii ATCC 17978]
          Length = 838

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 539 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 592

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 593 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 624


>gi|87124413|ref|ZP_01080262.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
 gi|86167985|gb|EAQ69243.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917]
          Length = 638

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 45/268 (16%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVAEAKQDLQEVVTFLKQPERFTSVGAQI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++            +L S++      ++           L+ + +   I     
Sbjct: 355 GRLSILEVHA-------RNKKLDSELSLDSIARRTPGFTGADLANLLNEAA---ILTARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSG 261
            +++I + E       D  D+I+A   G
Sbjct: 405 RKEAIGLAEID-----DAVDRIIAGMEG 427


>gi|328914941|gb|AEB55774.1| cell division protein FtsH [Chlamydophila psittaci 6BC]
          Length = 907

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 421 DVAGIEEAKEELIEIVDFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 475

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 476 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 508


>gi|271501677|ref|YP_003334703.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech586]
 gi|270345232|gb|ACZ77997.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech586]
          Length = 857

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|78189926|ref|YP_380264.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78172125|gb|ABB29221.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 439

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + +IGQ +A  AV+ A++      +  A + DE  P  + + +GPTGVGKT ++
Sbjct: 135 IEDELHKRVIGQHEAVTAVSEAVK------RSRAGMGDEKRPIGSFIFLGPTGVGKTELA 188

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 189 RTLADYLFDDEDAMIRIDMSEYMESHNVSRLV 220


>gi|328788555|ref|XP_393080.4| PREDICTED: spastin [Apis mellifera]
          Length = 712

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 438 EDIAGQETAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATQC 495

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 496 NATFFSISAASLT-SKYVGEG-EKLVRALFSIA 526


>gi|301098998|ref|XP_002898591.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262105016|gb|EEY63068.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 435

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   A++ +      LR+  R   + A      +PK +LL GP+G GKT ++R +A
Sbjct: 173 DDVAGIDGARKELEEVVDFLRHPTRYHAIGAK-----VPKGVLLCGPSGTGKTLLARAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F+    + F E+  VGR   ++ RDL   A
Sbjct: 228 SEAGVAFLFCSASDFVEM-LVGRGAARV-RDLFTQA 261


>gi|251788635|ref|YP_003003356.1| protein disaggregation chaperone [Dickeya zeae Ech1591]
 gi|247537256|gb|ACT05877.1| ATP-dependent chaperone ClpB [Dickeya zeae Ech1591]
          Length = 857

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|156740924|ref|YP_001431053.1| ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156232252|gb|ABU57035.1| ATPase AAA-2 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 871

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEERLHQRVVGQDEAVSAVANAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 619 RALAEFLFDDEQAMVRIDMSEYMEKHTVAR 648


>gi|329929828|ref|ZP_08283504.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
 gi|328935806|gb|EGG32267.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5]
          Length = 500

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 31/229 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ +AK+ +  AL    R + +       L  K ILL GP G GKT +++  A   
Sbjct: 71  EEIGGQDNAKQELREALDFLIRHEDIKKFGIRPL--KGILLTGPPGTGKTLMAKAAAHYT 128

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ YVG    +I RDL   A    R     E ++ A I  +E  +D 
Sbjct: 129 DSIFVAASGSEFVEM-YVGVGAGRI-RDLFKDA----RNRAAKENKQNAIIFIDE--IDV 180

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           + GK      RE  +   +     D             I + + P    +   N  E+  
Sbjct: 181 IGGKREGGQQREYDQTLNQLLTEMD------------GIYSQETPRILVIAATNRKEMLD 228

Query: 198 KVMGSGRKKKIRMSV----QKCYPELMRDES-----DRLIDMDTVHRDS 237
             +    +    + V    +K    ++   +      + +D++ +  ++
Sbjct: 229 SALLRPGRFDRHIQVDLPDKKGRTHILNLHAGNKPLHQDVDLEKIAEEA 277


>gi|327285542|ref|XP_003227492.1| PREDICTED: paraplegin-like [Anolis carolinensis]
          Length = 702

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     L++  R  QL A      +P+  LL+GP G GKT +++ +A
Sbjct: 292 KDVAGMHEAKLEVKEFVDYLKSPERYLQLGAK-----VPRGALLLGPPGCGKTLLAKAVA 346

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +  ++F E+  G     V  + ++       IV     D V ++
Sbjct: 347 TEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARARGPCIVYIDEIDAVGKK 399


>gi|296209257|ref|XP_002751459.1| PREDICTED: fidgetin-like protein 1-like [Callithrix jacchus]
          Length = 674

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 378 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 435

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 436 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 493



 Score = 38.4 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 487 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 546

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLIL 338
               I   A    V R    LPE   R  + ++L S     L++ +   I+
Sbjct: 547 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSREHCCLSEEEIEQIV 597


>gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
 gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
          Length = 853

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A    + +   L +  R  +L A +     P+ +LL GP G GKT ++R +A
Sbjct: 167 EDVAGADEAVDELQEIKDFLEDPSRYHELGAKI-----PRGVLLYGPPGTGKTLLARAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|295395582|ref|ZP_06805776.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971601|gb|EFG47482.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 870

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 21/242 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + IIGQ DA ++V+ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEDELHKRIIGQNDAIKSVSRAIR------RTRAGLKDPKRPSGSFIFAGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA       +  I +++++F+E   V R        +             ++VR +  
Sbjct: 560 KALAEFLFGDESALISLDMSEFSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRRPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +  + +    +   ++++   DI  G  +
Sbjct: 616 SIVLFDEVEKAHADIFNSLLQILEDGRLTDSQGREVDFKNTIIIMTTNLGTRDINRGTPM 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G    ++       S    +++  V +   +  R E    +D DT+    +Q  E   IV
Sbjct: 676 GFQADND------TSTSYDRMKQKVNEELKQHFRPEFLNRVD-DTIVFPQLQKAEIVEIV 728

Query: 248 FL 249
            L
Sbjct: 729 DL 730


>gi|225677083|ref|ZP_03788087.1| cell division protein FtsH [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590879|gb|EEH12102.1| cell division protein FtsH [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 612

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  +   + +  +++Q    L  ++ PK  LL+G  G GKT ++R +A  A
Sbjct: 154 DDVAGIDEAKEELVEIV-DFLKQKQKFQILGGKI-PKGCLLIGSPGTGKTLLARAIAGEA 211

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             PF  +  + F E+ +VG    ++ RD+ D     A  I+     D V
Sbjct: 212 NVPFFSISGSDFVEM-FVGVGASRV-RDMFDQGKKNAPCIIFIDEIDAV 258


>gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 714

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LLVGP G GKT ++R  A  AG PF  +  + F E+ YVG    ++ RDL D A
Sbjct: 244 RIPHGVLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEM-YVGVGASRV-RDLFDKA 301

Query: 111 INIV 114
              +
Sbjct: 302 KKTM 305


>gi|90408366|ref|ZP_01216529.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychromonas
           sp. CNPT3]
 gi|90310529|gb|EAS38651.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychromonas
           sp. CNPT3]
          Length = 752

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   + GQ +A   +  A+              ++    + L  GPTGVGKT ++
Sbjct: 450 KLSERLKMTVFGQNEAIEVLTDAIH-----LSRSGLTDEKKPVGSFLFAGPTGVGKTEVT 504

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           ++LA + G   ++ +++++ E            GYVG     ++ D V     
Sbjct: 505 QQLANILGVELLRFDMSEYMEKHTVSRLLGAPPGYVGHEQAGLLTDAVSKHPY 557


>gi|84997423|ref|XP_953433.1| endopeptidase (CLP homologue) ATP-binding chain [Theileria annulata
           strain Ankara]
 gi|65304429|emb|CAI76808.1| endopeptidase (CLP homologue) ATP-binding chain, putative
           [Theileria annulata]
          Length = 916

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 106/281 (37%), Gaps = 31/281 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L + +IGQ++A + V  A+R      +   ++++   P  + L  GP GVGK+ 
Sbjct: 581 RNMEEDLHKMVIGQEEAVKNVCKAIR------RAKTNIKNPNRPIGSFLFCGPPGVGKSE 634

Query: 69  ISRRLAR--LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVR 115
           ++R L +   A    I+++++++TE            GY G +       L +   +   
Sbjct: 635 VARALTKYLFAKENLIRIDMSEYTEPHSISRILGSPPGYKGHD---TGGQLTEKVKSNPY 691

Query: 116 ESRRDEVREQASINAEERILDALV--GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +  E+A  +    +L  L     T + N    F+  +     +     I+ +   
Sbjct: 692 SVVMFDEIEKAHHDVLNILLQILEDGKLTDSKNQTISFKNTIIIMTSNTGSNVIQRSSKG 751

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPEL----MRDESDRL 227
                F +    S   L +  L  + + S    ++   +     +  L    +++ +  +
Sbjct: 752 VHTFGFTVDSDESSDYLKIKALVMEELKSHFLPELINRIDDVILFKPLSESELKEIAKLM 811

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268
           ++  T   +S  ++      F D   K+   D      + R
Sbjct: 812 LNDLTARANSAGILIEISEKFADYILKLPRDDKSGARPLRR 852


>gi|163848669|ref|YP_001636713.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl]
 gi|222526605|ref|YP_002571076.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl]
 gi|163669958|gb|ABY36324.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl]
 gi|222450484|gb|ACM54750.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl]
          Length = 861

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 564 MEERLHQRVVGQDEAVIAVSNAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 618 RALAEFLFDDEQAMIRIDMSEYMEKHSVAR 647


>gi|332665301|ref|YP_004448089.1| ATPase AAA-2 domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334115|gb|AEE51216.1| ATPase AAA-2 domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 898

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ +A +AV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 561 LEKEIGQRLIGQDEAVKAVSDAI-----RRSRAGLQDADRPIGSFIFLGPTGVGKTELAK 615

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            +A +         +++++++ E   V R V      +             + VR +   
Sbjct: 616 TIAEVLFDDEKAMTRIDMSEYQEKHTVSRLVGAPPGYV----GYDEGGQLTEAVRRRPYS 671

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
                +LD +  + A  +T  +  + L DG ++D +    VA+  + I       G+ + 
Sbjct: 672 II---LLDEI--EKAHPDTFNILLQVLDDGRLTDNK--GRVANFKNTIIIMTSNMGSDLI 724

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           + N  +   ++    R + I  + ++ +  L  
Sbjct: 725 MENF-DDLEEMGEKHRTEIIATTKEEVFNLLKE 756


>gi|294339658|emb|CAZ88018.1| Chaperone clpB (Heat-shock protein F84.1) [Thiomonas sp. 3As]
          Length = 861

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A RAV+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 566 MEERLHRRVVGQDEAIRAVSDAIR------RSRAGLSDPRRPYGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 620 KGLAEFLFDTDEHIVRLDMSEFMEKHSVAR 649


>gi|187478581|ref|YP_786605.1| ATP-dependent clp protease ATP-binding [Bordetella avium 197N]
 gi|115423167|emb|CAJ49698.1| ATP-dependent clp protease ATP-binding (chaperone) [Bordetella
           avium 197N]
          Length = 767

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ  A  A+A +++            R E      L  GPTGVGKT +
Sbjct: 452 ATLDRDLKTVVFGQDQAIDALAASIK-----MARSGLGRPEKPIGAFLFSGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 507 ARQLAFTLGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHC 561


>gi|78485456|ref|YP_391381.1| AAA ATPase [Thiomicrospira crunogena XCL-2]
 gi|78363742|gb|ABB41707.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thiomicrospira
           crunogena XCL-2]
          Length = 748

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R + GQ +A  +V  A++              +    + L  GPTGVGKT +++
Sbjct: 452 LEESLQRVVFGQDEAVHSVVSAIK-----LARSGLNEGDRPTASFLFAGPTGVGKTELTQ 506

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+      ++ +++++ E            GYVG +   ++ + V+   + 
Sbjct: 507 QLAKHLDIELLRYDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTEAVNKHPHS 559


>gi|326434668|gb|EGD80238.1| mosaic virus helicase domain binding protein [Salpingoeca sp. ATCC
           50818]
          Length = 650

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++AKRA+   +     R  L   LR   MPK +LL GP G GKT I + +A  +
Sbjct: 375 DDIAGLEEAKRAIQEMVVWPMMRPDLFKGLRA--MPKGVLLFGPPGTGKTLIGKCIASQS 432

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  V  +  T   ++G   E+++R L  VA
Sbjct: 433 KATFFSVSASSLT-SKWIGEG-EKLVRALFAVA 463


>gi|319946100|ref|ZP_08020348.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           australis ATCC 700641]
 gi|319747746|gb|EFV99991.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           australis ATCC 700641]
          Length = 809

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 19/100 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+ +EL + +IGQ  A  +++ A+     R+        +    + L +GPTGVGKT ++
Sbjct: 504 ELEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFLFLGPTGVGKTELA 558

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           + LA +     +  I+ +++++ E            GYVG
Sbjct: 559 KALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|304560005|gb|ADM42669.1| ClpB [Edwardsiella tarda FL6-60]
          Length = 809

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 514 MEDELHRRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 567

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 568 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 599


>gi|237653311|ref|YP_002889625.1| ATP-dependent chaperone ClpB [Thauera sp. MZ1T]
 gi|237624558|gb|ACR01248.1| ATP-dependent chaperone ClpB [Thauera sp. MZ1T]
          Length = 860

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A R VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 563 KMEDKLHERVVGQDEAVRLVADAIR------RSRAGLSDENRPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 617 CKTLANFLFDSEEHLIRIDMSEFMEKHSVAR 647


>gi|224824764|ref|ZP_03697871.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Lutiella
           nitroferrum 2002]
 gi|224603257|gb|EEG09433.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Lutiella
           nitroferrum 2002]
          Length = 759

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+A A++              +    + L  GPTGVGKT +
Sbjct: 453 KNLDRDLRSVVFGQDKAIEALATAIK-----MARSGLGNPQKPIGSFLFSGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++LA   G   ++ +++++ E   V R
Sbjct: 508 AKQLAYFLGVEMLRFDMSEYMERHAVSR 535


>gi|162449912|ref|YP_001612279.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943099|sp|A9FDV9|FTSH2_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|161160494|emb|CAN91799.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 607

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGVGKTAISRRL 73
           R + G  +AK  ++  +        L A  R E     MP+ +LLVGP G GKT ++R +
Sbjct: 155 RDVAGNAEAKTELSEIV------DFLKAPERYEKLGGRMPRGVLLVGPPGTGKTLLARAI 208

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  A  PF     ++F E+ +VG    ++ RDL   A
Sbjct: 209 AGEASVPFFSASGSEFVEM-FVGVGAARV-RDLFSQA 243


>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
 gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 491

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 21/224 (9%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
             I GQ  AK+ +  AL    +  +     +R     K ILL GP G GKT +++  AR 
Sbjct: 63  EDIGGQNAAKKELQEALDFLLYSERMRELGIR---PLKGILLSGPPGTGKTLLAKAAARY 119

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
             + ++ V  ++F E+ Y G   +++ R L   A    RE  + E +++A I  +E  +D
Sbjct: 120 TDSVYLAVSGSEFVEM-YAGVGADRV-RRLFKKA----RELAKKEKKDRAIIFIDE--MD 171

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            L  K  ++ +   + + L         ++++    S       +    +        L 
Sbjct: 172 ILGAKRGSNVSHHEYDQTLNQL-----LVEMDGLGNSEQGPKILMIAATNRAEALDPALV 226

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDR----LIDMDTVHRD 236
                    K      +     L     ++     +D++ + ++
Sbjct: 227 RPGRFDRLVKVDLPDKEGRLAILKIHTKNKPLASCVDLEQIAQE 270


>gi|293606226|ref|ZP_06688589.1| ATP-dependent Clp protease [Achromobacter piechaudii ATCC 43553]
 gi|292815373|gb|EFF74491.1| ATP-dependent Clp protease [Achromobacter piechaudii ATCC 43553]
          Length = 780

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 20/115 (17%)

Query: 14  SELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + LDR     + GQ  A  A++ A++            + E      LL GPTGVGKT +
Sbjct: 464 ATLDRDLKTVVFGQDGAIDALSAAIK-----MARSGLGKPEKPIGAFLLSGPTGVGKTEV 518

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 519 ARQLAFTLGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHC 573


>gi|307729565|ref|YP_003906789.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1003]
 gi|307584100|gb|ADN57498.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1003]
          Length = 865

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHERVIGQDEAINAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
 gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
          Length = 711

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|163755772|ref|ZP_02162890.1| putative transmembrane AAA-metalloprotease FtsH [Kordia algicida
           OT-1]
 gi|161324293|gb|EDP95624.1| putative transmembrane AAA-metalloprotease FtsH [Kordia algicida
           OT-1]
          Length = 645

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVG  G GKT +++ +A
Sbjct: 195 KDVAGLEGAKEEVQEIVDFLKNPEKYTSLGGKI-----PKGALLVGQPGTGKTLLAKAVA 249

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 250 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 283


>gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
 gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
          Length = 577

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK  LL+GP G GKT ++R +A  A  PF  +  ++F E+ +VG     V Q+ +  ++
Sbjct: 155 IPKGFLLIGPPGTGKTLLARAIAGEANVPFFSISASEFVEL-FVGVGASRVRQLFKKALE 213

Query: 109 VAINIVRESRRDEVREQA----------SINAEERILDALVGKTATS--------NTREV 150
            + +I+     D +  +                 ++L  + G    S        N  +V
Sbjct: 214 KSPSIIFIDEIDAIGRKRGSGIGGGNDEREQTLNQLLTEIDGFAENSGVIVIAATNRPDV 273

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
               L      D++I+I + D    +    + 
Sbjct: 274 LDNALIRPGRFDRKIEIGLPDRKGRLEILSVH 305


>gi|134291697|ref|YP_001115466.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4]
 gi|134134886|gb|ABO59211.1| membrane protease FtsH catalytic subunit [Burkholderia
           vietnamiensis G4]
          Length = 635

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +      +R++R           +PK +L+VG  G GKT ++R 
Sbjct: 169 DDIAGIDEAKAELQQIVAFLRDPDRYQRLGG-------KIPKGVLIVGAPGTGKTLLARA 221

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 222 VAGEAAVPFFTISGSAFVEM-FVGVGAARV-RDLFEQA 257


>gi|325121501|gb|ADY81024.1| ATP-dependent protease [Acinetobacter calcoaceticus PHEA-2]
          Length = 859

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
 gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM
           15272]
          Length = 687

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 220 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 276


>gi|299770934|ref|YP_003732960.1| ATP-dependent chaperone ClpB [Acinetobacter sp. DR1]
 gi|298701022|gb|ADI91587.1| ATP-dependent chaperone ClpB [Acinetobacter sp. DR1]
          Length = 859

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|256824427|ref|YP_003148387.1| ATPase with chaperone activity [Kytococcus sedentarius DSM 20547]
 gi|256687820|gb|ACV05622.1| ATPase with chaperone activity, ATP-binding subunit [Kytococcus
           sedentarius DSM 20547]
          Length = 865

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ  A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 570 MEEFLGERLIGQTAAVRAVSDAV-----RRSRAGLADPDRPTGSFLFLGPTGVGKTELAK 624

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
            LA          +++++++++E            GYVG +
Sbjct: 625 ALADFLFDDERAMVRIDMSEYSERHAVARLVGAPPGYVGHD 665


>gi|254486761|ref|ZP_05099966.1| ATP-dependent chaperone ClpB [Roseobacter sp. GAI101]
 gi|214043630|gb|EEB84268.1| ATP-dependent chaperone ClpB [Roseobacter sp. GAI101]
          Length = 871

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEEQLHNRVIGQNQAVKAVANAVR------RARAGLNDEARPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 614 KAVAEFLFDDENAMVRIDMSEFMEKHAVSR 643


>gi|295837256|ref|ZP_06824189.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. SPB74]
 gi|197699938|gb|EDY46871.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           sp. SPB74]
          Length = 841

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT ++
Sbjct: 507 MEDELHKRVIGQEDAVKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELA 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|33862651|ref|NP_894211.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313]
 gi|33634567|emb|CAE20553.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313]
          Length = 625

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKDELTEIVDFLKTPERYTDIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EAEVPFFIISGSEFVEL-FVGAGAARV-RDLFEQA 258


>gi|329943106|ref|ZP_08291880.1| ATP-dependent metallopeptidase HflB family protein [Chlamydophila
           psittaci Cal10]
 gi|332287688|ref|YP_004422589.1| cell division protein [Chlamydophila psittaci 6BC]
 gi|313848262|emb|CBY17263.1| putative cell division protein [Chlamydophila psittaci RD1]
 gi|325506440|gb|ADZ18078.1| cell division protein [Chlamydophila psittaci 6BC]
 gi|328814653|gb|EGF84643.1| ATP-dependent metallopeptidase HflB family protein [Chlamydophila
           psittaci Cal10]
          Length = 913

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 427 DVAGIEEAKEELIEIVDFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|313234214|emb|CBY10282.1| unnamed protein product [Oikopleura dioica]
          Length = 634

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ ILL GP G GKT I++ +A  AG PF+    ++F E+ YVG   ++I R L + A 
Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKRI-RKLFEQAR 256

Query: 112 NI 113
           N 
Sbjct: 257 NN 258


>gi|284042270|ref|YP_003392610.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
 gi|283946491|gb|ADB49235.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
          Length = 855

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ +A  AVA AL     R+        E      L +GPTGVGKT ++R
Sbjct: 568 MEERLHQRVIGQDEAVEAVANAL-----RRSRAGLQDPERPIGTFLFLGPTGVGKTELAR 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALAEFMFDSQDAMVRLDMSEYMERHAVSR 651


>gi|227497061|ref|ZP_03927311.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
 gi|226833458|gb|EEH65841.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM
           15434]
          Length = 721

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 245 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGASRV-RDLFEQA 301


>gi|116072384|ref|ZP_01469651.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116064906|gb|EAU70665.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 624

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R  ++ A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 171 DVAGVDEAKDELTEIVDFLKTPERYAEIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 226 EAEVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 258


>gi|332292421|ref|YP_004431030.1| ATP-dependent metalloprotease FtsH [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170507|gb|AEE19762.1| ATP-dependent metalloprotease FtsH [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 658

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G + AK  +      L+N  +   L   +     PK  LLVG  G GKT +
Sbjct: 194 VKTTFKDVAGLEGAKEEIQEIVDFLKNPEKYTSLGGKI-----PKGALLVGQPGTGKTLL 248

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 249 AKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 287


>gi|289207888|ref|YP_003459954.1| ATP-dependent metalloprotease FtsH [Thioalkalivibrio sp. K90mix]
 gi|288943519|gb|ADC71218.1| ATP-dependent metalloprotease FtsH [Thioalkalivibrio sp. K90mix]
          Length = 650

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V+     LR+  + Q+L   +     P+ +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVSELVDFLRDPSKFQKLGGQI-----PRGVLMVGSPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 213 EAKVPFFSISGSDFVEM-FVGVGASRVRDMFSEAKKHAPCIIFIDEIDAV 261


>gi|289208441|ref|YP_003460507.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Thioalkalivibrio sp. K90mix]
 gi|288944072|gb|ADC71771.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Thioalkalivibrio sp. K90mix]
          Length = 755

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 16/117 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L   + GQ +A   +A +++              +    + L  GPTGVGKT
Sbjct: 453 TLRNLERNLKMTVFGQDEAIGTLATSIK-----MARSGLGDMDKPIGSFLFAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            ++R+LA+  G    + +++++ E            GYVG +   ++ D +    + 
Sbjct: 508 EVTRQLAQQLGIHLARFDMSEYMERHTVSRLIGAPPGYVGYDEGGLLTDAILKHPHS 564


>gi|195042654|ref|XP_001991475.1| GH12676 [Drosophila grimshawi]
 gi|193901233|gb|EDW00100.1| GH12676 [Drosophila grimshawi]
          Length = 825

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G ++AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 351 LFRDVAGLKEAKQEVKEFVDYLKTPDKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 405

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 406 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 457


>gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201]
 gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201]
          Length = 709

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A + +      L    R   + A      +PK +LL GP G GKT +++ +A 
Sbjct: 171 DVAGADEAVQELDEIKQFLVEHDRFTAVGAK-----VPKGVLLYGPPGTGKTLLAKAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFQQA 258


>gi|188581554|ref|YP_001924999.1| ATP-dependent chaperone ClpB [Methylobacterium populi BJ001]
 gi|179345052|gb|ACB80464.1| ATP-dependent chaperone ClpB [Methylobacterium populi BJ001]
          Length = 874

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALGKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 371

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IGQ DAK+   I +    +  + P ++  E  PKNIL  GP G GKT ++R LA   
Sbjct: 126 EEVIGQLDAKKKCKIVI----KYLENP-EIFGEWAPKNILFYGPPGTGKTMLARALATET 180

Query: 78  GAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             P   ++ T+     +G   + +E +     +    I+     D +
Sbjct: 181 EVPLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAI 227


>gi|29840520|ref|NP_829626.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC]
 gi|29834869|gb|AAP05504.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC]
          Length = 913

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 427 DVAGIEEAKEELIEIVDFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|95930472|ref|ZP_01313208.1| ATP-dependent metalloprotease FtsH [Desulfuromonas acetoxidans DSM
           684]
 gi|95133512|gb|EAT15175.1| ATP-dependent metalloprotease FtsH [Desulfuromonas acetoxidans DSM
           684]
          Length = 619

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 99/267 (37%), Gaps = 34/267 (12%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   ++  +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 153 KDVAGVDEAKEELEEIVAFLKDPKKFTRLGGRI-----PKGVLLVGSPGTGKTLLARAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV-REQASIN 129
             A  PF  +  + F E+ +VG    ++ RDL       A  I+     D V R + +  
Sbjct: 208 GEADVPFFTISGSDFVEM-FVGVGASRV-RDLFAQGKKNAPCIIFIDEIDAVGRHRGA-- 263

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                     G     + RE    +L       +  +  +   +++  +   P     G 
Sbjct: 264 ----------GLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGR 313

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
            +   +  +    GR   +++         M D     +DM+ V + +           +
Sbjct: 314 FDRQVVVPRPDIKGRTTILKVH---ARKVPMSDS----VDMEIVAKGTPGFSGADLANLI 366

Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLL 276
           +E   + AR +   + +S     +D +
Sbjct: 367 NEAALLAARANKELVDMSDLEAAKDKV 393


>gi|301098428|ref|XP_002898307.1| chaperone clpB [Phytophthora infestans T30-4]
 gi|262105370|gb|EEY63422.1| chaperone clpB [Phytophthora infestans T30-4]
          Length = 372

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 24/131 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L++++IGQ++A +AV+  +     R                + +GPTGVGKT ++
Sbjct: 62  KMEDHLNQHVIGQEEAVKAVSNCV-----RLARAGLHAHNRPLGVFMFLGPTGVGKTELT 116

Query: 71  RRLARLA-GAP--FIKVEVTKFTEI-----------GYV-----GRNVEQIIRDLVDVAI 111
           + L+      P    +++++++ E            GYV     G+  E + R    V +
Sbjct: 117 KSLSEFLFQTPQALTRIDMSEYMEKFNVSRLVGAAPGYVGFEEGGQLTEAVRRRPYQVVL 176

Query: 112 NIVRESRRDEV 122
               E    +V
Sbjct: 177 FDEFEKAHHDV 187


>gi|21243921|ref|NP_643503.1| ATP-dependent Clp protease subunit [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109529|gb|AAM38039.1| ATP-dependent Clp protease subunit [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 871

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 572 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 625

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 626 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 655


>gi|325916266|ref|ZP_08178547.1| ATP-dependent chaperone ClpB [Xanthomonas vesicatoria ATCC 35937]
 gi|325537560|gb|EGD09275.1| ATP-dependent chaperone ClpB [Xanthomonas vesicatoria ATCC 35937]
          Length = 859

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 560 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 614 KALADFLFDSTEAMIRIDMSEFMEKHSVSR 643


>gi|268680380|ref|YP_003304811.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618411|gb|ACZ12776.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM
           6946]
          Length = 643

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 217 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 274

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A                  +   + L + +    +    + 
Sbjct: 275 KEAPAIVFIDEIDAIGKSRAAN------GMMGGNDEREQTLNQLLAEMDGFSSDKSPVIV 328

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             +++            G  +   L  K    GR  K  + V     +L     D+ ID+
Sbjct: 329 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFQGR--KDILKVHSADIKL-----DKNIDL 381

Query: 231 DTVHRDSIQMVENYGIVFLDE 251
           + + R +  +        ++E
Sbjct: 382 EEIARLTAGLAGADLANIINE 402


>gi|168484295|ref|ZP_02709247.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042427|gb|EDT50473.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1873-00]
          Length = 652

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A 
Sbjct: 205 DVAGAEEAKTELKEIVEFLKDAERFNKIGARI-----PKGVLLVGPPGTGKTLLAKAVAG 259

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG  F  +  ++F E+ +VG    ++ RDL   A   
Sbjct: 260 EAGVTFFSISASEFVEL-FVGTGAARV-RDLFAQAKKN 295


>gi|298208154|ref|YP_003716333.1| putative transmembrane AAA-metalloprotease FtsH [Croceibacter
           atlanticus HTCC2559]
 gi|83848075|gb|EAP85945.1| putative transmembrane AAA-metalloprotease FtsH [Croceibacter
           atlanticus HTCC2559]
          Length = 691

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G + AK  V      L+N  +   L   +     PK  LLVG  G GKT +++ +A
Sbjct: 205 KDVAGLEGAKEEVQEIVDFLKNPDKYTNLGGKI-----PKGALLVGQPGTGKTLLAKAVA 259

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 260 GEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 293


>gi|238784508|ref|ZP_04628516.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           bercovieri ATCC 43970]
 gi|238714571|gb|EEQ06575.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           bercovieri ATCC 43970]
          Length = 758

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 449 KNLSDRLNMLVFGQDKAIDALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|313220370|emb|CBY31225.1| unnamed protein product [Oikopleura dioica]
          Length = 634

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ ILL GP G GKT I++ +A  AG PF+    ++F E+ YVG   ++I R L + A 
Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKRI-RKLFEQAR 256

Query: 112 NI 113
           N 
Sbjct: 257 NN 258


>gi|297617230|ref|YP_003702389.1| Vesicle-fusing ATPase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145067|gb|ADI01824.1| Vesicle-fusing ATPase [Syntrophothermus lipocalidus DSM 12680]
          Length = 495

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 12/218 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  A + +  AL    R  ++       L  K ILLVGP G GKT ++R  A   
Sbjct: 65  DDIGGQDSAIKELREALEFLLRPVEILEMGIRPL--KGILLVGPPGTGKTLLARAAASYT 122

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F+    ++F E+ Y G   +++ R L   A    R+  R   +  A +  +E  L+ 
Sbjct: 123 KSSFLATSGSEFIEM-YAGVGAKRV-RQLFSEA----RKKARMSGKNSAILFIDE--LEV 174

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L  +  +  +   + + L    +    +  +       +   +        +L       
Sbjct: 175 LGARRGSHQSHMEYDQTLNQLLVEMDGLMPDDETRLLVVGATNRADMLDPALLRPGRFDR 234

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           +VM S   KK R+ + + +        D  +DM+ + R
Sbjct: 235 QVMVSLPDKKGRIRILEIHTRNKPLADD--VDMEDLGR 270


>gi|298292690|ref|YP_003694629.1| ATP-dependent chaperone ClpB [Starkeya novella DSM 506]
 gi|296929201|gb|ADH90010.1| ATP-dependent chaperone ClpB [Starkeya novella DSM 506]
          Length = 872

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 568 MEDVLSKRVIGQKEAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 622 KALASFLFDDDTALVRIDMSEYMEKHAVAR 651


>gi|258542820|ref|YP_003188253.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633898|dbj|BAH99873.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636957|dbj|BAI02926.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640010|dbj|BAI05972.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643066|dbj|BAI09021.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646121|dbj|BAI12069.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649174|dbj|BAI15115.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652161|dbj|BAI18095.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655218|dbj|BAI21145.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 871

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 566 MEDELRKSVVGQEQALKAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         +++++++F E   V R
Sbjct: 620 KALARFLFDDDKALLRIDMSEFMEKHAVAR 649


>gi|255552398|ref|XP_002517243.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
 gi|223543614|gb|EEF45143.1| Mitochondrial respiratory chain complexes assembly protein AFG3,
           putative [Ricinus communis]
          Length = 802

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARLAG 78
            GQ+  KR +   +R      +   + +D+    PK +LL GP G GKT +++ +A  AG
Sbjct: 314 AGQEYIKRELQEIVRI----LKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG 369

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+    T F E+ +VG    ++ +DL   A
Sbjct: 370 LPFLAANGTDFVEM-FVGVAASRV-KDLFANA 399


>gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 532

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L+N  + +          MPK +LLVGP GVGKT I++ +A
Sbjct: 146 DDVAGVEEAKVELLEIVDFLKNPTKYKNFG-----VKMPKGVLLVGPPGVGKTLIAKAVA 200

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF       F EI YVG     V ++       A +I+     D +
Sbjct: 201 GEAGVPFFYQSGASFVEI-YVGMGAKRVRELFLKAKSQAPSIIFIDEIDAI 250


>gi|325282674|ref|YP_004255215.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
 gi|324314483|gb|ADY25598.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP]
          Length = 655

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK   + V   LR   + + L A +     P  +LLVGP G GKT +++ +A 
Sbjct: 194 DVAGCEEAKADLQEVVDFLRQPEKYRALGARI-----PHGLLLVGPPGSGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            AG P+  V  + F E+ +VG     V  +       A  I+     D V  +
Sbjct: 249 EAGVPYFAVSGSDFVEM-FVGVGAARVRDLFEQARKAAPCIIFMDEIDAVGRK 300


>gi|258513583|ref|YP_003189805.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777288|gb|ACV61182.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 608

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 190 RIPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 247

Query: 111 INI 113
              
Sbjct: 248 KKN 250


>gi|296135529|ref|YP_003642771.1| ATP-dependent chaperone ClpB [Thiomonas intermedia K12]
 gi|295795651|gb|ADG30441.1| ATP-dependent chaperone ClpB [Thiomonas intermedia K12]
          Length = 861

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A RAV+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 566 MEERLHRRVVGQDEAIRAVSDAIR------RSRAGLSDPRRPYGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 620 KGLAEFLFDTDEHIVRLDMSEFMEKHSVAR 649


>gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
 gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
          Length = 711

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|293608681|ref|ZP_06690984.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829254|gb|EFF87616.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 838

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 539 MEEFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 592

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 593 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 624


>gi|238762121|ref|ZP_04623094.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           kristensenii ATCC 33638]
 gi|238699849|gb|EEP92593.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           kristensenii ATCC 33638]
          Length = 758

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A++ A++             +     + L  GPTGVGKT +
Sbjct: 449 KNLSDRLNMLVFGQDKAIDALSEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|225352556|ref|ZP_03743579.1| hypothetical protein BIFPSEUDO_04180 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156750|gb|EEG70144.1| hypothetical protein BIFPSEUDO_04180 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 595 MEDYLGKRVIGQKEAIQAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 649

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 650 ALADFLFDDEKAMVRIDMSEYMEKASVSR 678


>gi|210632443|ref|ZP_03297371.1| hypothetical protein COLSTE_01268 [Collinsella stercoris DSM 13279]
 gi|210159538|gb|EEA90509.1| hypothetical protein COLSTE_01268 [Collinsella stercoris DSM 13279]
          Length = 876

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 113/303 (37%), Gaps = 37/303 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
           S L   IIGQ +A  AVA A+R      +  + L+D   P    + +GPTG GKT +++ 
Sbjct: 527 SVLKTRIIGQDEAVSAVAKAIR------RSRSPLKDPRRPGGSFIFLGPTGTGKTELAKT 580

Query: 73  LARLA---GAPFIKVEVTKF-----------TEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           LA          I  ++++F           +  GYVG      +   V      V    
Sbjct: 581 LAEYLFGSKDALISFDMSEFGSQYEVSKLIGSPPGYVGHEEGGQLTKAVRRNPYSV--VL 638

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  L     T +  +    +     ++      E+A  ++    
Sbjct: 639 FDEI-EKAHPDIFNILLQVLEEGRLTDSQGKTVDFRNTVIIMTSNVGAREIAQDANVGFG 697

Query: 179 FDIPGGASVGILNLSEL-----FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                G + G +    +       +     R   I +  +     L    ++ L+D   +
Sbjct: 698 TTGEAGLTAGEIKTRAMGELKRLFRPEFINRVDDIVVFQKLAGKSLTAI-AELLVD--DL 754

Query: 234 HRDSIQMVENYGIVFLDE-FDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
            +  I       IV  DE  DKIV    D  NG    R  +Q+ +   +    ++ ++G+
Sbjct: 755 RQRLI--ANGMNIVLTDEALDKIVREGTDVSNGARPLRRAIQKLIEDPLSEELLAGEWGA 812

Query: 291 INT 293
            +T
Sbjct: 813 GDT 815


>gi|170751814|ref|YP_001758074.1| ATP-dependent chaperone ClpB [Methylobacterium radiotolerans JCM
           2831]
 gi|170658336|gb|ACB27391.1| ATP-dependent chaperone ClpB [Methylobacterium radiotolerans JCM
           2831]
          Length = 874

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 564 MEEALSKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 618 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 647


>gi|168334113|ref|ZP_02692326.1| ATP-dependent Zn protease [Epulopiscium sp. 'N.t. morphotype B']
          Length = 670

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 99/255 (38%), Gaps = 38/255 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A 
Sbjct: 198 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAK 255

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
                         A +  +E  +DA+             RK+         E +  +  
Sbjct: 256 KNAP----------AIVFIDE--IDAVG------------RKRGAGLGGGHDEREQTLNQ 291

Query: 172 TSSDISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSV----QKCYPELMRDES-- 224
              ++  F I  G   +   N S++    +    +   ++ V     K    +++  +  
Sbjct: 292 LLVEMDGFGINEGVIVMAATNRSDVLDPALLRPGRFDRQVVVGRPDVKGREAILKVHAKG 351

Query: 225 ---DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
              +  ID+  + R +           ++E   + AR +   I +    VQ+  + +  G
Sbjct: 352 KPLNEDIDLQVIARTTSGFTGADLANLMNEAALLTARHNKRAIDMDE--VQKAFIKITVG 409

Query: 282 SSVSTKYGSINTDHI 296
           +   +   ++N   I
Sbjct: 410 TEKKSNLVTVNEKKI 424


>gi|388369|gb|AAC37362.1| heat shock protein 78 [Saccharomyces cerevisiae]
          Length = 811

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  A++ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 498 MENSLKERVVGQDEAIAAISDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTKLTK 552

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 553 ALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 605


>gi|332365107|gb|EGJ42872.1| cell division protein FtsH [Streptococcus sanguinis SK355]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|303262206|ref|ZP_07348151.1| cell division protein FtsH [Streptococcus pneumoniae SP14-BS292]
 gi|302636846|gb|EFL67336.1| cell division protein FtsH [Streptococcus pneumoniae SP14-BS292]
          Length = 650

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|262376331|ref|ZP_06069561.1| ATP-dependent chaperone ClpB [Acinetobacter lwoffii SH145]
 gi|262308932|gb|EEY90065.1| ATP-dependent chaperone ClpB [Acinetobacter lwoffii SH145]
          Length = 859

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHNRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 645


>gi|260428761|ref|ZP_05782738.1| chaperone protein ClpB [Citreicella sp. SE45]
 gi|260419384|gb|EEX12637.1| chaperone protein ClpB [Citreicella sp. SE45]
          Length = 864

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + ++GQ  A +AVA A+R      +  A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 564 LHKRVVGQNQAVKAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELTKAVA 617

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                  +  +++++++F E   V R
Sbjct: 618 EFLFDDDSAMVRIDMSEFMEKHSVAR 643


>gi|258655293|ref|YP_003204449.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233]
 gi|258558518|gb|ACV81460.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233]
          Length = 874

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R ++GQ +A R V+ A+     R+        +    + L VGPTGVGKT +++
Sbjct: 569 MEEGLGRRVVGQAEAVRVVSDAV-----RRSRAGIADPDRPTGSFLFVGPTGVGKTELAK 623

Query: 72  RLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
            LA      P   +++++++++E   V R V
Sbjct: 624 ALADFLFDDPRAMVRIDMSEYSEKHSVARLV 654


>gi|207109416|ref|ZP_03243578.1| cell division protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 192

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +  +  A+L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 20  AGNEEAKEEVVEIV-DFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVP 77

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL + A          DE+       A      A  
Sbjct: 78  FFSMGGSSFIEM-FVGLGASRV-RDLFETAKKQAPSIIFIDEIDAIGKSRA------AGG 129

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
             +      +   + L + +    E    +   +++      P     G  +   L  K
Sbjct: 130 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 188


>gi|162448687|ref|YP_001611054.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943089|sp|A9GRC9|FTSH1_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|161159269|emb|CAN90574.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 619

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  +   +      +R+R            +P+ +LL+GP G GKT ++R +
Sbjct: 164 DVAGVDEAKDELVEVVDFLKEPSRYRSLGG-------RIPRGLLLIGPPGTGKTLLARAV 216

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  A  PF  +  ++F E+ +VG     V ++  +    A +IV     D V
Sbjct: 217 AGEANVPFFSLNASEFVEM-FVGLGAARVRELFEEARKSAPSIVFIDEIDAV 267


>gi|50294636|ref|XP_449729.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529043|emb|CAG62705.1| unnamed protein product [Candida glabrata]
          Length = 787

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ +A  AV+ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 474 MENSLRERVVGQDEAIEAVSDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 528

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V + +      ++  +   + E+ R +
Sbjct: 529 ALAEFLFDDESNVIRFDMSEFQEKHTVSKLIGAPPGYVLSESGGQLTEAVRRK 581


>gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 417

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F EI YVG    +I RDL   A
Sbjct: 207 IPKGVLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEI-YVGVGASRI-RDLFQKA 263


>gi|47228098|emb|CAF97727.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 689

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  +   ++     PK  +L GP G GKT +++  A  A
Sbjct: 205 KDVAGCKEAKLEIMEFV-NFLKNPKQYQEMGA-KFPKGAILTGPPGTGKTLLAKATAGEA 262

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
             PFI V  ++F E+ + G     V  + R     A  I+     D V  +
Sbjct: 263 NVPFISVNGSEFLEM-FAGVGPARVRDLFRTASKNAPCILFIDEIDAVGRK 312



 Score = 36.8 bits (84), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305
           I+F+DE D +  +      GV  E        LVE    +T      T+ ++F  +    
Sbjct: 300 ILFIDEIDAVGRKRGQGNFGVQSEQENTLNQLLVEMDGFNTT-----TNVVVFAGTNRPD 354

Query: 306 VSRPADL------------LPEIQGRFPVR-VHLKSLNKS 332
           +  PA +            LP+I GR  +  VHL+ L   
Sbjct: 355 ILDPALMRPGRFDRQIYVGLPDIIGRASIFKVHLRPLKLD 394


>gi|330443787|ref|YP_004376773.1| cell division protein FtsH [Chlamydophila pecorum E58]
 gi|328806897|gb|AEB41070.1| cell division protein FtsH [Chlamydophila pecorum E58]
          Length = 909

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 422 DVAGIEEAKEELIEIVEFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 476

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ D A
Sbjct: 477 EANRPFFSIAGSDFVEM-FVGVGASRI-RDMFDQA 509


>gi|319442402|ref|ZP_07991558.1| cell division protein [Corynebacterium variabile DSM 44702]
          Length = 821

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +A   +   +R+     Q PA   +    +P+ +LL GP G GKT ++R +A 
Sbjct: 167 DDVAGADEAVEEL-DEIRDF---LQDPARYEELGAKVPRGVLLYGPPGTGKTLLARAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 223 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFKTA 255


>gi|315605193|ref|ZP_07880240.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313114|gb|EFU61184.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 683

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 39/229 (17%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    ++ R+L + A
Sbjct: 207 RIPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASRV-RELFERA 264

Query: 111 INIVRESRRDEVREQASINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKE 164
                          A I  +E  +DA+                +   + L + +  D+ 
Sbjct: 265 KKNAP----------AIIFVDE--IDAVGRHRGSGIGGGNDEREQTLNQLLVEMDGFDER 312

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
            +I +   ++     D P     G  +     +      + ++  + V      L     
Sbjct: 313 ANIILIAATNRPDILD-PALLRPGRFDRQ--IAVEAPDLKGREAILKVHAHGKPLTEQVD 369

Query: 225 DRLI----------DMDTVHRDSIQMVENYGIVFLDE------FDKIVA 257
            R I          D+  V  ++  +     + F+DE       D+++A
Sbjct: 370 LRQIAKRTPGFTGADLANVLNEAALLTARSNMRFIDERAIDEAIDRVIA 418


>gi|300716063|ref|YP_003740866.1| ATP-dependent Clp protease ATP-binding protein ClpA [Erwinia
           billingiae Eb661]
 gi|299061899|emb|CAX59015.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Erwinia
           billingiae Eb661]
          Length = 758

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ DA  A+  A++            +D     + L  GPTGVGKT
Sbjct: 447 TLKTLSDRLKMLVFGQDDAIEALTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|260436025|ref|ZP_05789995.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
 gi|260413899|gb|EEX07195.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
          Length = 639

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 183 DDVAGVTEAKQELQEVVTFLKQPERFTSVGAQI-----PRGLLLVGPPGTGKTLLAKAIA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 238 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIG 296

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 297 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 356

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             ++  D+          LS            ++           LM + +   I     
Sbjct: 357 GRLAILDVHCRNKKLEEELS-------LESIARRTPGFTGADLANLMNEAA---ILTARR 406

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +++I + E       D  D+I+A   G 
Sbjct: 407 RKEAIGLSEID-----DAVDRIIAGMEGR 430


>gi|220917560|ref|YP_002492864.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955414|gb|ACL65798.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 635

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV- 109
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL +  
Sbjct: 186 RIPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQG 243

Query: 110 ---AINIVRESRRDEV 122
              A  I+     D V
Sbjct: 244 KKNAPCIIFIDEIDAV 259


>gi|168046528|ref|XP_001775725.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672877|gb|EDQ59408.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 909

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 24/259 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ  A ++VA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 574 LDDELHKRVVGQDPAVKSVAEAI------QRSRAGLSDPNKPIASFMFMGPTGVGKTELA 627

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          ++++++++ E   V R V      +       + E+ R   R  A 
Sbjct: 628 KALASYLFNTEEAIVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEAVRR--RPYAV 685

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
           I  +E        + A S+   +F + L DG ++D +       + ++          S 
Sbjct: 686 ILFDEI-------EKAHSDVFNIFLQILDDGRVTDSQGR---TVSFTNTVIIMTSNVGSH 735

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
            +LN ++  +        + +R  V +      R E    ID + +    +   +   IV
Sbjct: 736 YVLNSADSMAGNSKEVIYEAMRARVMEAARNTFRPEFMNRID-EYIVFQQLDRDQISRIV 794

Query: 248 FLDEFDKIVARDSGNGIGV 266
            +   D++  R S   I +
Sbjct: 795 RIQ-LDRVQKRLSDRKITL 812


>gi|149192137|ref|ZP_01870359.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio shilonii
           AK1]
 gi|148834040|gb|EDL51055.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio shilonii
           AK1]
          Length = 760

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ  A   +  A++             D+    + L  GPTG
Sbjct: 449 SDKDILQNLDDKMKMLVFGQDKAIDVLCEAIK-----MTRAGLGNDDRPVGSFLFAGPTG 503

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 563

Query: 113 I 113
            
Sbjct: 564 S 564


>gi|62185344|ref|YP_220129.1| putative cell division protein [Chlamydophila abortus S26/3]
 gi|62148411|emb|CAH64178.1| putative cell division protein [Chlamydophila abortus S26/3]
          Length = 913

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  +   L   +     PK +LL+GP G GKT I++ ++ 
Sbjct: 427 DVAGIEEAKEELIEIVDFLKNPTKFTSLGGRI-----PKGVLLIGPPGTGKTLIAKAVSG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|127512495|ref|YP_001093692.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           loihica PV-4]
 gi|126637790|gb|ABO23433.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           loihica PV-4]
          Length = 752

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A  A++ A+     R              + L  GPTGVGKT +
Sbjct: 449 KNLERNLKMVVFGQDKAIEALSSAI-----RLSRSGLSGAHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA       ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 504 TSQLASCLSLKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 558


>gi|325695773|gb|EGD37672.1| cell division protein FtsH [Streptococcus sanguinis SK150]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|315274644|ref|ZP_07869487.1| negative regulator of genetic competence ClpC/MecB [Listeria
           marthii FSL S4-120]
 gi|313615725|gb|EFR89010.1| negative regulator of genetic competence ClpC/MecB [Listeria
           marthii FSL S4-120]
          Length = 338

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 19  MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 72

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 73  RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 117

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 118 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 170

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+ V      K +   V +   +  R E    ID +T+   
Sbjct: 171 IIMTSNIGAQEMKQDKSMGFNVVDPIKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 229

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 230 SLQEKELKQIVTL 242



 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 216 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKAKIAKD 271

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
             +      + GAR L+  +++ +ED+ 
Sbjct: 272 GYD-----PEYGARPLKRAIQKEVEDML 294


>gi|306430671|emb|CBJ17082.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430673|emb|CBJ17083.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|34783526|gb|AAH35929.1| SPG7 protein [Homo sapiens]
          Length = 732

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 246 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 300

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 301 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 353


>gi|322434287|ref|YP_004216499.1| ATP-dependent chaperone ClpB [Acidobacterium sp. MP5ACTX9]
 gi|321162014|gb|ADW67719.1| ATP-dependent chaperone ClpB [Acidobacterium sp. MP5ACTX9]
          Length = 888

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L   ++GQ +A  AVA A+R      +  A L D   P  + + +GPTGVGKT  
Sbjct: 583 EMEARLRERVVGQDEALSAVANAIR------RSRAGLSDPKRPIGSFIFLGPTGVGKTET 636

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA       A  ++++++++ E   V R
Sbjct: 637 ARALAEFLFDDEAAMVRIDMSEYMEKHAVSR 667


>gi|289661674|ref|ZP_06483255.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667092|ref|ZP_06488167.1| ATP-dependent Clp protease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 861

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVSR 645


>gi|320009911|gb|ADW04761.1| ATP-dependent chaperone ClpB [Streptomyces flavogriseus ATCC 33331]
          Length = 866

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MESELGRRLIGQGEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 651


>gi|227834132|ref|YP_002835839.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183381|ref|ZP_06042802.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455148|gb|ACP33901.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 853

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L + ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGQRVVGQKEAVTAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  +++++++F E   V R V      +   A   + E+ R  
Sbjct: 620 ALADFLFDDESAMVRIDMSEFGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRR 672


>gi|157151579|ref|YP_001451358.1| cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076373|gb|ABV11056.1| Cell division protein ftsH-like protein [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 660

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-VEVVEFLKDPKRYTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|327467725|gb|EGF13219.1| cell division protein FtsH [Streptococcus sanguinis SK330]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|330810449|ref|YP_004354911.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378557|gb|AEA69907.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 756

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|309801709|ref|ZP_07695829.1| ATP-dependent chaperone protein ClpB [Bifidobacterium dentium
           JCVIHMP022]
 gi|308221651|gb|EFO77943.1| ATP-dependent chaperone protein ClpB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 878

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEEYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|306430711|emb|CBJ17102.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430723|emb|CBJ17108.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430745|emb|CBJ17119.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
 gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
          Length = 709

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K+ +      L++  + +Q+ + +     PK +LLVGP G GKT ++R +A 
Sbjct: 166 DVAGADEEKQELIEIVDFLKDNKKFKQMGSRI-----PKGVLLVGPPGTGKTLLARAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 221 EAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|225075314|ref|ZP_03718513.1| hypothetical protein NEIFLAOT_00317 [Neisseria flavescens
           NRL30031/H210]
 gi|224953489|gb|EEG34698.1| hypothetical protein NEIFLAOT_00317 [Neisseria flavescens
           NRL30031/H210]
          Length = 653

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKSPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|145529371|ref|XP_001450474.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418085|emb|CAK83077.1| unnamed protein product [Paramecium tetraurelia]
          Length = 413

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 27/184 (14%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G   AK+ +      L++  + + + A LR     + +++ GP G GKT +++  A  
Sbjct: 163 IYGLDHAKKQLQQIIEYLQDPLKYRNVGARLR-----RGVMIYGPPGTGKTMLAKATATE 217

Query: 77  AGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQA------- 126
           +   F+    T+F E+ YVG   + V ++ +     +  I+     D +  +        
Sbjct: 218 SNVNFLYCSATEFIEV-YVGTGPKRVRELFKKARQSSPAIIFIDEIDSIAYKRKNQNFGT 276

Query: 127 SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                 ++L  L G             N  ++  + L      D +I+I +   +     
Sbjct: 277 ETVLLNQLLTELDGFKENENIVVIAATNRIQILDEALLRSGRFDIKIEINLPSENERKGI 336

Query: 179 FDIP 182
             + 
Sbjct: 337 MGVH 340


>gi|127513762|ref|YP_001094959.1| ATP-dependent metalloprotease FtsH [Shewanella loihica PV-4]
 gi|126639057|gb|ABO24700.1| membrane protease FtsH catalytic subunit [Shewanella loihica PV-4]
          Length = 655

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVKELVDYLKEPTKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|332364177|gb|EGJ41954.1| cell division protein FtsH [Streptococcus sanguinis SK49]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|330940300|gb|EGH43420.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 757

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L   + GQ  A  +++ A++              +    + L  GPTGVGKT  
Sbjct: 455 RNLELDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGPTGVGKTEA 509

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA+  G   I+ +++++ E            GYVG +   ++ + +    + 
Sbjct: 510 ARQLAKALGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITRQPHC 564


>gi|325686490|gb|EGD28519.1| cell division protein FtsH [Streptococcus sanguinis SK72]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|307206656|gb|EFN84628.1| Spastin [Harpegnathos saltator]
          Length = 578

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 304 EDIAGQETAKQALQEMVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTLLARAVATQC 361

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  +A
Sbjct: 362 NATFFSISAASLT-SKYVGEG-EKLVRALFAIA 392


>gi|289433587|ref|YP_003463459.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289169831|emb|CBH26369.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 820

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+        K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 36.4 bits (83), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLSERDIHVKLTEGAKSKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
             +      + GAR L+  +++ +ED+ 
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDML 776


>gi|262281630|ref|ZP_06059399.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
 gi|262262084|gb|EEY80781.1| cell division protein FtsH [Streptococcus sp. 2_1_36FAA]
          Length = 660

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-VEVVEFLKDPKRYTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
          Length = 765

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQAR 276

Query: 112 N 112
           N
Sbjct: 277 N 277


>gi|125716901|ref|YP_001034034.1| membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase) [Streptococcus
           sanguinis SK36]
 gi|323350842|ref|ZP_08086501.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|125496818|gb|ABN43484.1| Membrane ATPase FtsH, degrades sigma32 (integral membrane
           cell-division Zn metallo-peptidase), putative
           [Streptococcus sanguinis SK36]
 gi|322123016|gb|EFX94719.1| cell division protein FtsH [Streptococcus sanguinis VMC66]
 gi|324989591|gb|EGC21537.1| cell division protein FtsH [Streptococcus sanguinis SK353]
 gi|324991853|gb|EGC23776.1| cell division protein FtsH [Streptococcus sanguinis SK405]
 gi|324996257|gb|EGC28167.1| cell division protein FtsH [Streptococcus sanguinis SK678]
 gi|325698019|gb|EGD39900.1| cell division protein FtsH [Streptococcus sanguinis SK160]
 gi|327458477|gb|EGF04827.1| cell division protein FtsH [Streptococcus sanguinis SK1]
 gi|327463847|gb|EGF10163.1| cell division protein FtsH [Streptococcus sanguinis SK1057]
 gi|327471621|gb|EGF17064.1| cell division protein FtsH [Streptococcus sanguinis SK408]
 gi|327490351|gb|EGF22138.1| cell division protein FtsH [Streptococcus sanguinis SK1058]
 gi|328945187|gb|EGG39342.1| cell division protein FtsH [Streptococcus sanguinis SK1087]
 gi|332359483|gb|EGJ37302.1| cell division protein FtsH [Streptococcus sanguinis SK1056]
 gi|332363619|gb|EGJ41400.1| cell division protein FtsH [Streptococcus sanguinis SK1059]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++R R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDRKRYTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 244 EAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|113954954|ref|YP_730623.1| metalloprotease ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
 gi|113882305|gb|ABI47263.1| metalloprotease, ATP-dependent, FtsH family protein [Synechococcus
           sp. CC9311]
          Length = 643

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 187 DDVAGVSEAKQDLEEVVTFLKQPERFTSVGAQI-----PKGVLLVGPPGTGKTLLAKAIA 241

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 242 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 291


>gi|86157920|ref|YP_464705.1| FtsH peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122777|ref|YP_002134728.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|85774431|gb|ABC81268.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172626|gb|ACG73599.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 635

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV- 109
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL +  
Sbjct: 186 RIPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQG 243

Query: 110 ---AINIVRESRRDEV 122
              A  I+     D V
Sbjct: 244 KKNAPCIIFIDEIDAV 259


>gi|34499252|ref|NP_903467.1| cell division protein FtsH [Chromobacterium violaceum ATCC 12472]
 gi|34105103|gb|AAQ61459.1| cell division protein FtsH [Chromobacterium violaceum ATCC 12472]
          Length = 639

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  R Q L   +     P+ ILL G  G GKT +++ +A 
Sbjct: 160 DVAGCDEAKEEVKEIVDYLRDPSRYQSLGGRI-----PRGILLAGSPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 215 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFEQAKKN 250


>gi|332800065|ref|YP_004461564.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
 gi|332697800|gb|AEE92257.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1]
          Length = 599

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 188 RIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAARV-RDLFEQA 245

Query: 111 INI 113
              
Sbjct: 246 KKN 248


>gi|315605809|ref|ZP_07880841.1| chaperone protein ClpB [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312507|gb|EFU60592.1| chaperone protein ClpB [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 870

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A RAV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 572 MEDELAKRLIGQKEAVRAVSDAVR------RSRAGLADPNRPTGSFLFLGPTGVGKTELA 625

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++++E   V R V
Sbjct: 626 KSLAEFLFDDERAIVRIDMSEYSEKHSVARLV 657


>gi|262372812|ref|ZP_06066091.1| ATP-dependent chaperone ClpB [Acinetobacter junii SH205]
 gi|262312837|gb|EEY93922.1| ATP-dependent chaperone ClpB [Acinetobacter junii SH205]
          Length = 859

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHNRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|91202702|emb|CAJ72341.1| strongly similar to ATP-dependent zinc-metalloprotease ftsH
           involved in cell division [Candidatus Kuenenia
           stuttgartiensis]
          Length = 620

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 35/222 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +AK  +   +       + P   R     +PK +LLVG  G GKT +++ +A 
Sbjct: 166 DDVAGIDEAKEELQEII----EFLKTPEKFRAIGGKIPKGVLLVGAPGTGKTLLAKAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ +VG    ++ RDL + A             ++A        L
Sbjct: 222 EAGVPFFNMSGSEFVEM-FVGVGAARV-RDLFNQAD------------QKAPCIIFIDEL 267

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DAL             + + ++      E +  +     ++  FD   G   +G  N  E
Sbjct: 268 DALG------------KARGQNPMGGHDEREQTLNQLLVEMDGFDSNKGVIIMGATNRPE 315

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           +    +    +   ++ V    P+L   E+   +    V  +
Sbjct: 316 ILDSALLRPGRFDRQVVV--DRPDLHGREAILKVHSADVKME 355


>gi|78212968|ref|YP_381747.1| FtsH peptidase [Synechococcus sp. CC9605]
 gi|78197427|gb|ABB35192.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 639

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 183 DDVAGVTEAKQELQEVVTFLKQPERFTSVGAQI-----PRGLLLVGPPGTGKTLLAKAIA 237

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 238 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIG 296

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 297 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 356

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             ++  D+          LS            ++           LM + +   I     
Sbjct: 357 GRLAILDVHCRNKKLEEELS-------LESIARRTPGFTGADLANLMNEAA---ILTARR 406

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +++I + E       D  D+I+A   G 
Sbjct: 407 RKEAIGLSEID-----DAVDRIIAGMEGR 430


>gi|54035866|sp|Q8PHQ4|CLPB_XANAC RecName: Full=Chaperone protein ClpB
          Length = 861

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 645


>gi|322386419|ref|ZP_08060048.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
 gi|321269505|gb|EFX52436.1| cell division protein FtsH [Streptococcus cristatus ATCC 51100]
          Length = 655

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRYTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 291


>gi|294666951|ref|ZP_06732180.1| ATP-dependent Clp protease subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603240|gb|EFF46662.1| ATP-dependent Clp protease subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 859

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 560 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 614 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 643


>gi|254560110|ref|YP_003067205.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
 gi|254267388|emb|CAX23225.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
          Length = 874

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALGKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|157376528|ref|YP_001475128.1| microtubule-severing ATPase [Shewanella sediminis HAW-EB3]
 gi|157318902|gb|ABV38000.1| Microtubule-severing ATPase [Shewanella sediminis HAW-EB3]
          Length = 659

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVKELVDYLKEPTKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|145354607|ref|XP_001421571.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581809|gb|ABO99864.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 547

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IR 104
           R    PK ILL GP G GKT +++ +A  AG PF     ++F E+ +VG    ++    +
Sbjct: 92  RYVEPPKGILLEGPPGTGKTLLAKAVAGEAGLPFFYANGSEFVEM-FVGVAASRMRNLFK 150

Query: 105 DLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164
              + A +I+     D +  +A    E+R        ++TS   +   + L + +  D +
Sbjct: 151 RARENAPSIIFIDELDTI-GRARNAGEQR-------DSSTSEREQGLMQMLVEMDGFDNK 202


>gi|145588634|ref|YP_001155231.1| ATPase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047040|gb|ABP33667.1| ATPase AAA-2 domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 867

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ++A RAV+ A+R      +  A L +E  P  + L +GPTGVGKT +
Sbjct: 568 KMEELLHKRVVGQEEAIRAVSDAIR------RSRAGLAEENRPYGSFLFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 622 CKALAGFLFDSEDHLIRIDMSEFMEKHSVAR 652


>gi|9279712|dbj|BAB01269.1| cell division protein FtsH-like [Arabidopsis thaliana]
          Length = 976

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 19/186 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 535 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 586

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 587 GASRVRALYQEARENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVS 639

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 640 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMA 699

Query: 214 KCYPEL 219
           +    +
Sbjct: 700 EDLDYM 705


>gi|306430715|emb|CBJ17104.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
 gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
          Length = 765

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQAR 276

Query: 112 N 112
           N
Sbjct: 277 N 277


>gi|254582312|ref|XP_002497141.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
 gi|238940033|emb|CAR28208.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 546 EIVVHGDEVHWEDIAGLESAKASLKEAVVYPFLRPDLFRGLREPI--RGMLLFGPPGTGK 603

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  V  +  T   Y+G + E+++R L  VA
Sbjct: 604 TMLARSVATESHSTFFSVSASTLT-SKYLGES-EKLVRALFAVA 645


>gi|237751691|ref|ZP_04582171.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
 gi|229373057|gb|EEO23448.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC
           43879]
          Length = 584

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G ++AK     +   L+N  + Q L        +PK +LLVGP GVGKT I++ +A
Sbjct: 184 RDVAGIKEAKDDLLEIIDYLKNPKKYQDLG-----IYLPKGVLLVGPPGVGKTMIAKAIA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             +G PF     + F ++ YVG   +++ RDL            R      A I  +E  
Sbjct: 239 GESGVPFFYHSGSSFVQV-YVGVGAQRV-RDLF----------ARARACAPAIIFIDE-- 284

Query: 135 LDALVGKTATSNTREV---FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +DA+       N +E      + L + +    +  + V   ++ +   D
Sbjct: 285 IDAIGKARGADNHQEWESTLNELLTELDGFSDQSGVIVIGATNQVDVMD 333


>gi|114664148|ref|XP_001140079.1| PREDICTED: paraplegin isoform 2 [Pan troglodytes]
          Length = 751

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 265 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 319

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 320 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 372


>gi|18401080|ref|NP_566541.1| EMB2083 (embryo defective 2083); ATP binding / ATP-dependent
           peptidase/ ATPase/ metalloendopeptidase/
           metallopeptidase/ nucleoside-triphosphatase/ nucleotide
           binding / serine-type endopeptidase [Arabidopsis
           thaliana]
 gi|332642273|gb|AEE75794.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 876

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 19/186 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 435 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 486

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 487 GASRVRALYQEARENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVS 539

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 540 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMA 599

Query: 214 KCYPEL 219
           +    +
Sbjct: 600 EDLDYM 605


>gi|301800986|emb|CBW33647.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae INV200]
          Length = 652

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|294624966|ref|ZP_06703618.1| ATP-dependent Clp protease subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600729|gb|EFF44814.1| ATP-dependent Clp protease subunit [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 861

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 645


>gi|283778627|ref|YP_003369382.1| ATP-dependent chaperone ClpB [Pirellula staleyi DSM 6068]
 gi|283437080|gb|ADB15522.1| ATP-dependent chaperone ClpB [Pirellula staleyi DSM 6068]
          Length = 888

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AV+ A+R      +  + L+D   P  + L +GPTGVGKT + 
Sbjct: 581 MEERLHQRVIGQDEAVTAVSDAVR------RSRSGLQDPNRPIGSFLFLGPTGVGKTELC 634

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +     +  +++++++F E   V R V
Sbjct: 635 KALAEVMFDDESAMVRIDMSEFMEKHNVSRLV 666


>gi|241758851|ref|ZP_04756964.1| cell division protein FtsH [Neisseria flavescens SK114]
 gi|241321059|gb|EER57272.1| cell division protein FtsH [Neisseria flavescens SK114]
          Length = 653

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKSPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|94676876|ref|YP_588651.1| ATP-dependent chaperone protein ClpB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94220026|gb|ABF14185.1| ATP-dependent chaperone protein ClpB [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 862

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   L + ++GQ +A  AV+ A+     R+             + + +GPTGVGKT + +
Sbjct: 565 IEQYLHQRVVGQNEAVEAVSNAI-----RRSRAGIADPNRPIGSFMFLGPTGVGKTELCK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++F E   V R V
Sbjct: 620 ALAAFVFDSDTAIVRIDMSEFMERHSVSRMV 650


>gi|91792360|ref|YP_562011.1| ATP-dependent metalloprotease FtsH [Shewanella denitrificans OS217]
 gi|91714362|gb|ABE54288.1| membrane protease FtsH catalytic subunit [Shewanella denitrificans
           OS217]
          Length = 656

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGQPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|16802278|ref|NP_463763.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           EGD-e]
 gi|47097423|ref|ZP_00234971.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224498922|ref|ZP_03667271.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           Finland 1988]
 gi|224502473|ref|ZP_03670780.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
           R2-561]
 gi|254828692|ref|ZP_05233379.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           N3-165]
 gi|254831943|ref|ZP_05236598.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           10403S]
 gi|254900587|ref|ZP_05260511.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J0161]
 gi|254913462|ref|ZP_05263474.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J2818]
 gi|254937957|ref|ZP_05269654.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
           F6900]
 gi|284800527|ref|YP_003412392.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5578]
 gi|284993713|ref|YP_003415481.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5923]
 gi|16409597|emb|CAD00759.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           EGD-e]
 gi|47014200|gb|EAL05185.1| negative regulator of genetic competence ClpC/MecB [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258601096|gb|EEW14421.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
           N3-165]
 gi|258610567|gb|EEW23175.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
           F6900]
 gi|284056089|gb|ADB67030.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5578]
 gi|284059180|gb|ADB70119.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           08-5923]
 gi|293591469|gb|EFF99803.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
           J2818]
          Length = 820

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 599

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 600 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 652

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+        K +   V +   +  R E    ID +T+   
Sbjct: 653 IIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 711

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 712 SLQEKELKQIVTL 724



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 698 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKD 753

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 754 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 797


>gi|313668136|ref|YP_004048420.1| ClpB protein [Neisseria lactamica ST-640]
 gi|313005598|emb|CBN87035.1| ClpB protein [Neisseria lactamica 020-06]
          Length = 857

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|310658246|ref|YP_003935967.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii DSM
           519]
 gi|308825024|emb|CBH21062.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii]
          Length = 656

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     PK IL+VGP G GKT +S+ +A  A  PF  +  + F
Sbjct: 177 IVDFLKNPKKYIELGARI-----PKGILMVGPPGTGKTYLSKAVAGEAKVPFFSISGSDF 231

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL + A
Sbjct: 232 VEM-FVGVGASRV-RDLFEQA 250


>gi|297288317|ref|XP_002803322.1| PREDICTED: fidgetin-like protein 1-like isoform 6 [Macaca mulatta]
 gi|297288319|ref|XP_002803323.1| PREDICTED: fidgetin-like protein 1-like isoform 7 [Macaca mulatta]
          Length = 563

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 15/120 (12%)

Query: 6   NFSPREIV----SELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54
           N  P+ I       +D         I G + AK  +   +     R  +   LR    PK
Sbjct: 267 NLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PK 324

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            ILL GP G GKT I + +A  +GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 325 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 382



 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 376 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTTSEDRILVVGATN 435

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLIL 338
               I   A    V R    LPE   R  + ++L S     L++ +   ++
Sbjct: 436 RPQEIDEAARRRLVKRLYIPLPEASARKHIVINLMSKEQCCLSEEEIEQVV 486


>gi|237821205|ref|ZP_04597050.1| hypothetical protein SpneC19_02581 [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 651

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|1314297|gb|AAC44446.1| ClpC ATPase [Listeria monocytogenes]
          Length = 825

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 506 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 560 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 604

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 605 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 657

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+        K +   V +   +  R E    ID +T+   
Sbjct: 658 IIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 716

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 717 SLQEKELKQIVTL 729



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 703 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLAERDIHVKLTEGAKSKIAKD 758

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425
             +      + GAR L+  +++ +ED+           V    +YV + + D
Sbjct: 759 GYD-----PEYGARPLKRAIQKEVEDMLSEELLRGNIKV---GDYVEIGVKD 802


>gi|325294725|ref|YP_004281239.1| ATPase AAA [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065173|gb|ADY73180.1| ATPase AAA-2 domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 844

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ+ A +A++ A+R      +  A L+    P  + L +GPTGVGKT +
Sbjct: 516 KMEEELHKRVIGQERAIKAISEAIR------RARAGLQPPNRPLGSFLFLGPTGVGKTEL 569

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I+++++++ E   V +
Sbjct: 570 AKTLAEYLFGDETAIIRLDMSEYMEKHAVSK 600



 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 39/318 (12%)

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           AS   EE I   L  +           + ++    + +     +   +  + +F   G  
Sbjct: 503 ASKLQEEEIQKLLKMEEELHKRVIGQERAIKAISEAIRRARAGLQPPNRPLGSFLFLGPT 562

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---------DMDTVHRD 236
            VG   L++  ++ +       IR+ + +    + +    +LI         +      +
Sbjct: 563 GVGKTELAKTLAEYLFGDETAIIRLDMSE---YMEKHAVSKLIGAPPGYVGYEEGGQLTE 619

Query: 237 SIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +++  + Y ++ LDE +K         +   D G         V      ++  S+V ++
Sbjct: 620 AVRR-KPYSVILLDEIEKAHPDVFNILLQILDDGRLTDAKGRTVDFSNTVIIMTSNVGSE 678

Query: 288 YGSINTDHILFIASGAFHVSRPADLL----PEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           Y    +                 +L     PE   R    +    L++ + + I+     
Sbjct: 679 YLMNLSKEEFEKRYDEIKEQIMNELKKRFRPEFLNRIDEIIIFHPLSEEEIKQIV----D 734

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS-- 401
            LI +  + ++  GI +  TE++  ALA         V + GAR L+  ++R +E     
Sbjct: 735 LLITKLNKRLEDRGIKIVLTEEAKSALAK-----KGYVPEFGARPLRRTIQRDIETPLSV 789

Query: 402 --FSASDLQEKTVVIDAE 417
                +      V ID +
Sbjct: 790 KILEGTVKDGDKVKIDYD 807


>gi|319638317|ref|ZP_07993080.1| cell division protein FtsH [Neisseria mucosa C102]
 gi|317400590|gb|EFV81248.1| cell division protein FtsH [Neisseria mucosa C102]
          Length = 653

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKSPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 691

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 41/298 (13%)

Query: 8   SPREI-VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           SP EI V   D  + G  +AK  +      L+   +  +L   L     PK +LLVGP G
Sbjct: 214 SPEEILVDFSD--VKGIDEAKDELMQVVDFLKEPNKYLELGGRL-----PKGVLLVGPPG 266

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRD 120
           +GKT ++R +A  AG  F     ++F E+ +VG   + V  +     + A  +V     D
Sbjct: 267 IGKTLLARAIAGEAGVNFFNTSGSEFEEM-FVGLGAKRVRDLFAAAREKAPCVVFIDEID 325

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
            V  + +             ++  S   +   + L + +       + V   ++   + D
Sbjct: 326 SVGTRRTD------------QSIVSYPNQTLNQLLSEMDGFQPSEGVIVLAATNRHEDLD 373

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            P     G  +L    S     GR    ++        L + ++D  +D + + R ++  
Sbjct: 374 -PALLRPGRFDLELHLSLPDVRGRTDIFKL-------YLSKIKADANVDAELLARGTL-- 423

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298
              +GI+ +   D I    +   +  + +G +   +  +E +      GSI+   +LF
Sbjct: 424 ---FGILLIQGAD-IENMVNQAALKSASDGQKSVTMQYLEMAKDLILMGSIDETLLLF 477


>gi|298368449|ref|ZP_06979767.1| ATP-dependent metalloprotease FtsH [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282452|gb|EFI23939.1| ATP-dependent metalloprotease FtsH [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 653

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|261380959|ref|ZP_05985532.1| ATP-dependent chaperone protein ClpB [Neisseria subflava NJ9703]
 gi|284796218|gb|EFC51565.1| ATP-dependent chaperone protein ClpB [Neisseria subflava NJ9703]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVSR 647


>gi|170077059|ref|YP_001733697.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. PCC 7002]
 gi|169884728|gb|ACA98441.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. PCC 7002]
          Length = 979

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQQ+A  AV+ A+R      +  A ++D   P  + + +GPTGVGKT +
Sbjct: 582 QLEGHLHERVIGQQEAVEAVSAAIR------RARAGMKDPSRPIGSFMFMGPTGVGKTEL 635

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 636 ARALAAFLFDSEEAMVRIDMSEYMEKHAVSR 666


>gi|19483983|gb|AAH24986.1| Spg7 protein [Mus musculus]
          Length = 672

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 200 QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 254

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 255 TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 307


>gi|220930906|ref|YP_002507814.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
 gi|310943131|sp|B8D065|FTSH_HALOH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219992216|gb|ACL68819.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
          Length = 630

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 34/259 (13%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           + V   L+N  +  ++ A      +PK +LLVGP G GKT ++R +A  AG PF  +  +
Sbjct: 176 QEVVEFLKNPDKFTRMGAK-----VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGS 230

Query: 88  KFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKTA 143
            F E+ +VG    ++ RDL +     A  I+     D V  Q       R      G   
Sbjct: 231 DFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDELDAVGRQ-------RGAGLGGGHDE 281

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGS 202
              T      ++   E ++  I +   +    +      PG     ++         MG 
Sbjct: 282 REQTLNQLLVEMDGFEPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGI 341

Query: 203 GRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVENYGIVFL------D 250
            +       V         +   +        DM+ +  ++  +        +      D
Sbjct: 342 LKIHLRNKPVADDVDV---EVLAKRTPGFTGADMENLANEAAILAVRRRKNKITMEDFDD 398

Query: 251 EFDKIVARDSGNGIGVSRE 269
             DK++A  +     +S  
Sbjct: 399 AIDKVIAGPAKKSKVMSER 417


>gi|312116543|ref|XP_003151293.1| HflB protein [Loa loa]
 gi|307753542|gb|EFO12776.1| HflB protein [Loa loa]
          Length = 229

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG-----PTGVGKTAISRRL 73
            + G ++AK  +   + N  +  +    L  ++   ++LL G     P G GKT +++  
Sbjct: 116 DVAGCEEAKIEIMEFV-NFLKNPEQYKKLGAKIPKASLLLHGAILTGPPGTGKTLLAKAT 174

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  A  PFI V  ++F E+ +VG    ++ RD+  +A
Sbjct: 175 AGEANVPFITVSGSEFLEM-FVGVGPARV-RDMFSMA 209


>gi|297834500|ref|XP_002885132.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
 gi|297330972|gb|EFH61391.1| EMB2083 [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 19/186 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 433 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 484

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 485 GASRVRALYQEARENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVS 537

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 538 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMA 597

Query: 214 KCYPEL 219
           +    +
Sbjct: 598 EDLDYM 603


>gi|294142067|ref|YP_003558045.1| cell division protein FtsH [Shewanella violacea DSS12]
 gi|293328536|dbj|BAJ03267.1| cell division protein FtsH [Shewanella violacea DSS12]
          Length = 654

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   R Q+L   +     P  ILLVGP G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEDVKELVDYLKEPTRFQKLGGRI-----PTGILLVGPPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 258


>gi|269128700|ref|YP_003302070.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
 gi|268313658|gb|ACZ00033.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM
           43183]
          Length = 672

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 30/234 (12%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  + Q + A +     PK +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 179 IKDFLQNPAKFQAIGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDF 233

Query: 90  TEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA---------SINAEERIL 135
            E+ +VG    ++ RDL +     A +I+     D V R +                ++L
Sbjct: 234 VEM-FVGVGASRV-RDLFEQAKANAPSIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 291

Query: 136 DALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
             + G          A +N  ++    L      D++I ++  D         + G    
Sbjct: 292 VEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQITVDRPDLEGRKGILKVHGRGKP 351

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
              ++          G       +V      L    + + I MDT+  ++I  V
Sbjct: 352 FAPDVDLDVIARRTPGFTGADLANVINEAALLTARLNRKQIQMDTL-EEAIDRV 404


>gi|215408541|emb|CAR31120.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|148984557|ref|ZP_01817845.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP3-BS71]
 gi|147923334|gb|EDK74448.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP3-BS71]
 gi|301799162|emb|CBW31674.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae OXC141]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|70731244|ref|YP_260985.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas
           fluorescens Pf-5]
 gi|68345543|gb|AAY93149.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Pseudomonas
           fluorescens Pf-5]
          Length = 756

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKSPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|325924771|ref|ZP_08186207.1| ATP-dependent chaperone ClpB [Xanthomonas perforans 91-118]
 gi|325544787|gb|EGD16134.1| ATP-dependent chaperone ClpB [Xanthomonas perforans 91-118]
          Length = 861

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 645


>gi|325295444|ref|YP_004281958.1| ATPase AAA [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065892|gb|ADY73899.1| ATPase AAA-2 domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 820

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ++A +AVA A+    +R +L      +    + L +GPTGVGKT +++
Sbjct: 499 LEGELHKRVVGQEEAVKAVAKAI----KRSRLGIRSSAQRPIGSFLFLGPTGVGKTELAK 554

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          I+++++++ E   V R
Sbjct: 555 ALAEALFGDEKAMIRIDMSEYMEKHTVSR 583


>gi|313639760|gb|EFS04509.1| negative regulator of genetic competence ClpC/MecB [Listeria
           seeligeri FSL S4-171]
          Length = 783

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 464 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 517

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA          I+++++++ E            GYVG                    
Sbjct: 518 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG---------------YEEGG 562

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              ++VR++        +LD +  + A  +   +  + L DG ++D +    V D  + +
Sbjct: 563 QLTEKVRQKPYSVV---LLDEI--EKAHPDVFNMLLQVLDDGRLTDSK--GRVVDFRNTV 615

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                  GA     + S  F+        K +   V +   +  R E    ID +T+   
Sbjct: 616 IIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRID-ETIVFH 674

Query: 237 SIQMVENYGIVFL 249
           S+Q  E   IV L
Sbjct: 675 SLQEKELKQIVTL 687



 Score = 36.4 bits (83), Expect = 10.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL + + + I+T     L  Q  + +    I +  TE +   +A  
Sbjct: 661 PEFINRIDETIVFHSLQEKELKQIVTL----LTAQLTKRLSERDIHVKLTEGAKSKIAKD 716

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
             +      + GAR L+  +++ +ED+ 
Sbjct: 717 GYD-----PEYGARPLKRAIQKEVEDML 739


>gi|283768238|ref|ZP_06341151.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283105115|gb|EFC06486.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 615

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
             + G  + K+ ++  +   ++ ++      R   +PK ILL G  G GKT +++ +A  
Sbjct: 163 EDVAGCDEEKQEMSEIIDYLKYPKKFEKMGAR---IPKGILLSGYPGTGKTLLAKAVAGE 219

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  PF  +  + F E+ +VG     V  + +     A  ++     D V
Sbjct: 220 ADVPFYSISGSDFVEM-FVGVGASRVRDMFKKAKQTAPCMIFIDEIDAV 267


>gi|258568118|ref|XP_002584803.1| hypothetical protein UREG_05492 [Uncinocarpus reesii 1704]
 gi|237906249|gb|EEP80650.1| hypothetical protein UREG_05492 [Uncinocarpus reesii 1704]
          Length = 798

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 330 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 387

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 388 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 417


>gi|296138231|ref|YP_003645474.1| ATP-dependent chaperone ClpB [Tsukamurella paurometabola DSM 20162]
 gi|296026365|gb|ADG77135.1| ATP-dependent chaperone ClpB [Tsukamurella paurometabola DSM 20162]
          Length = 846

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + SE+ + +IGQ+ A  AV+ A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 562 MESEIGKRVIGQEAAVEAVSDAVR------RTRAGVADPNRPTGSFLFLGPTGVGKTELA 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 616 KGLAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 669


>gi|148988917|ref|ZP_01820332.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP6-BS73]
 gi|148997945|ref|ZP_01825458.1| cell division protein FtsH [Streptococcus pneumoniae SP11-BS70]
 gi|149013371|ref|ZP_01834080.1| cell division protein FtsH [Streptococcus pneumoniae SP19-BS75]
 gi|168493987|ref|ZP_02718130.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           CDC3059-06]
 gi|168576123|ref|ZP_02722028.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           MLV-016]
 gi|169833372|ref|YP_001693447.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182682982|ref|YP_001834729.1| cell division protein FtsH [Streptococcus pneumoniae CGSP14]
 gi|225857822|ref|YP_002739332.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           70585]
 gi|303259739|ref|ZP_07345715.1| cell division protein FtsH [Streptococcus pneumoniae SP-BS293]
 gi|303265402|ref|ZP_07351309.1| cell division protein FtsH [Streptococcus pneumoniae BS397]
 gi|303266050|ref|ZP_07351944.1| cell division protein FtsH [Streptococcus pneumoniae BS457]
 gi|303268458|ref|ZP_07354252.1| cell division protein FtsH [Streptococcus pneumoniae BS458]
 gi|307066649|ref|YP_003875615.1| ATP-dependent Zn protease [Streptococcus pneumoniae AP200]
 gi|147755955|gb|EDK62998.1| cell division protein FtsH [Streptococcus pneumoniae SP11-BS70]
 gi|147762894|gb|EDK69842.1| cell division protein FtsH [Streptococcus pneumoniae SP19-BS75]
 gi|147925728|gb|EDK76804.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP6-BS73]
 gi|168995874|gb|ACA36486.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182628316|gb|ACB89264.1| cell division protein FtsH [Streptococcus pneumoniae CGSP14]
 gi|183575900|gb|EDT96428.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578051|gb|EDT98579.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           MLV-016]
 gi|225720122|gb|ACO15976.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           70585]
 gi|302639291|gb|EFL69750.1| cell division protein FtsH [Streptococcus pneumoniae SP-BS293]
 gi|302641959|gb|EFL72312.1| cell division protein FtsH [Streptococcus pneumoniae BS458]
 gi|302644354|gb|EFL74607.1| cell division protein FtsH [Streptococcus pneumoniae BS457]
 gi|302645079|gb|EFL75319.1| cell division protein FtsH [Streptococcus pneumoniae BS397]
 gi|306408186|gb|ADM83613.1| ATP-dependent Zn protease [Streptococcus pneumoniae AP200]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|118594569|ref|ZP_01551916.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
 gi|118440347|gb|EAV46974.1| ATP-dependent metalloprotease FtsH [Methylophilales bacterium
           HTCC2181]
          Length = 630

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  ++K  V+  +   ++  +  +L   +     P+ +L+VGP G GKT ++R +A 
Sbjct: 157 DVAGCDESKEEVSEIVEFLKDPTKFHKLGGRI-----PRGVLMVGPPGTGKTLLARAIAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 212 EAKVPFYSISGSDFVEM-FVGVGAARV-RDMFEQA 244


>gi|118602880|ref|YP_904095.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567819|gb|ABL02624.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 740

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL   + GQ  A  +++ A++            + +    + L  GPTGVGKT I
Sbjct: 444 KNLEVELKLDVFGQDYALSSLSTAIK-----LSRSGLAQVDKPMGSFLFAGPTGVGKTEI 498

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++LAR+ G   ++ +++++ E            GYVG +   ++ + V+ +  
Sbjct: 499 CKQLARIMGVKLLRFDMSEYGERHSISRLIGSPPGYVGYDEGGLLTEAVNASPY 552


>gi|71906583|ref|YP_284170.1| FtsH peptidase [Dechloromonas aromatica RCB]
 gi|71846204|gb|AAZ45700.1| membrane protease FtsH catalytic subunit [Dechloromonas aromatica
           RCB]
          Length = 626

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      LR+  + Q+L   +     PK +L+VG  G GKT +++ +A 
Sbjct: 155 DVAGCDEAKEEVQEIVDFLRDPSKFQKLGGRI-----PKGVLMVGNPGTGKTLLAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKH 245


>gi|295676449|ref|YP_003604973.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1002]
 gi|295436292|gb|ADG15462.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1002]
          Length = 865

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I S+L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIESKLHERVVGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|163857486|ref|YP_001631784.1| ATP-dependent protease, ATPase subunit [Bordetella petrii DSM
           12804]
 gi|163261214|emb|CAP43516.1| ATP-dependent protease, ATPase subunit [Bordetella petrii]
          Length = 886

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 588 QMEDHLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTEL 641

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++++F E   V R
Sbjct: 642 TRALADFLFDSEEHMIRIDMSEFMEKHSVAR 672


>gi|283456829|ref|YP_003361393.1| ATP-dependent chaperone ClpB [Bifidobacterium dentium Bd1]
 gi|283103463|gb|ADB10569.1| ATP-dependent chaperone ClpB [Bifidobacterium dentium Bd1]
          Length = 878

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEEYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|262369634|ref|ZP_06062962.1| ATP-dependent protease Hsp 100 [Acinetobacter johnsonii SH046]
 gi|262315702|gb|EEY96741.1| ATP-dependent protease Hsp 100 [Acinetobacter johnsonii SH046]
          Length = 859

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ DA  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHNRVVGQDDAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|257068458|ref|YP_003154713.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
 gi|310943121|sp|C7MC16|FTSH_BRAFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256559276|gb|ACU85123.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium
           DSM 4810]
          Length = 704

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L +  R Q + A +     PK +LL GP G GKT +++ +A 
Sbjct: 178 DVAGADEAVEELDEIKQFLVDPGRYQAVGAKI-----PKGVLLYGPPGTGKTLLAKAVAG 232

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 233 EANVPFYSISGSDFVEM-FVGVGASRV-RDLFNTA 265


>gi|323340114|ref|ZP_08080379.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
 gi|323092491|gb|EFZ35098.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644]
          Length = 719

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      LR+  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 202 DVAGAEEEKQELVEVVEFLRDPHKFLALGAKI-----PSGVLLEGPPGTGKTLLAKAVAG 256

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 257 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 292


>gi|215408579|emb|CAR31139.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|209519546|ref|ZP_03268339.1| ATP-dependent chaperone ClpB [Burkholderia sp. H160]
 gi|209500025|gb|EEA00088.1| ATP-dependent chaperone ClpB [Burkholderia sp. H160]
          Length = 865

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I S+L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIESKLHERVVGQDEAINAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|94498969|ref|ZP_01305507.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
 gi|94428601|gb|EAT13573.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
          Length = 870

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL ++++GQ DA  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEQELHKHVVGQDDAITAVSNAVR------RSRAGLSDPRKPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALATFMFDSQDAMVRIDMSEFMEKHSVAR 645


>gi|312601163|gb|ADQ90418.1| Cell division protein [Mycoplasma hyopneumoniae 168]
          Length = 715

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+N  +     A +     P+ ILL GP G GKT +++  A 
Sbjct: 230 DVAGNVEAKEEITEFIDYLKNPTKYAAAGAKI-----PRGILLGGPPGTGKTLLAKATAG 284

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ YVG   +++ R+L   A N 
Sbjct: 285 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKDARND 320


>gi|294650714|ref|ZP_06728066.1| ATP-dependent chaperone protein ClpB [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823398|gb|EFF82249.1| ATP-dependent chaperone protein ClpB [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 859

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + S L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MESFLHNRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|258509509|ref|YP_003172260.1| cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|257149436|emb|CAR88409.1| Cell division protein FtsH [Lactobacillus rhamnosus GG]
 gi|259650777|dbj|BAI42939.1| ATP-dependent Zn protease FtsH [Lactobacillus rhamnosus GG]
          Length = 716

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 190 DVAGAEEEKQELVEVVEFLKDPRKFSALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 277


>gi|229551624|ref|ZP_04440349.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|258540709|ref|YP_003175208.1| cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
 gi|229315028|gb|EEN81001.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1]
 gi|257152385|emb|CAR91357.1| Cell division protein FtsH [Lactobacillus rhamnosus Lc 705]
          Length = 716

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 190 DVAGAEEEKQELVEVVEFLKDPRKFSALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 277


>gi|207342330|gb|EDZ70121.1| YMR089Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 825

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 32/268 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  +   L   +  ++ P+  +L GP G GKT +++  A  A
Sbjct: 348 KDVAGCDEAKEEIMEFV-SFLKEPSLYEKMGAKI-PRGAILSGPPGTGKTLLAKATAGEA 405

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ----- 125
           G PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++     
Sbjct: 406 GVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGNFSG 463

Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A+   E  +   LV              A +N  ++  K L      D+ I+I+  +   
Sbjct: 464 ANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEG 523

Query: 175 DISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDRLID 229
             + F +       +  I +L    + +        I     +         +++ +L  
Sbjct: 524 RKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNH 583

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVA 257
            +      I  VE    +   E  K+VA
Sbjct: 584 FEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|188534765|ref|YP_001908562.1| protein disaggregation chaperone [Erwinia tasmaniensis Et1/99]
 gi|188029807|emb|CAO97688.1| Chaperone ClpB [Erwinia tasmaniensis Et1/99]
          Length = 859

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQQ+A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHTRVIGQQEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|187734574|ref|YP_001876686.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187424626|gb|ACD03905.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 860

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 44/258 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  A+A ALR      +  AD++D   P  + L +GPTGVGKT ++
Sbjct: 531 MEEELKSKVIGQDEAASAIARALR------RSRADIKDPRRPIGSFLFLGPTGVGKTYLA 584

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA +        I+V+++++ E            GYVG +    + + V      V  
Sbjct: 585 RNLAEIMFGTSDALIQVDMSEYMEKHTTSRLIGSPPGYVGHDEGGQLTEAVRRRPYSV-- 642

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV E+A  +    +L  L   + T +          +   +   +   V   S+  
Sbjct: 643 ILFDEV-EKAHPDVMNLLLQILEEGSVTDSLGRKI-----NFRNTIIILTSNVGAASAKR 696

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKI-------------RMSVQKCYPELMRDE 223
            +    G  +    + + +  K++ + RK+               RM  +     ++  E
Sbjct: 697 QSTMGFGAMAADNADYAAMKEKILEAARKQFRPEFLNRFDDISVFRMLERDDLERIVHLE 756

Query: 224 SDRLIDMDTVHRDSIQMV 241
           +D+LI    +   +I + 
Sbjct: 757 ADKLI--SRLKTKNITLA 772



 Score = 37.6 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   RF      + L + D   I+      LI +    +KT+ I L  +++++  +   
Sbjct: 729 PEFLNRFDDISVFRMLERDDLERIVHLEADKLISR----LKTKNITLALSQEALSLIIK- 783

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDIS 401
               N      GAR ++  +ER+LED  
Sbjct: 784 ----NGYDPQYGARPMRRAIERLLEDPL 807


>gi|148993572|ref|ZP_01823043.1| cell division protein FtsH [Streptococcus pneumoniae SP9-BS68]
 gi|168489348|ref|ZP_02713547.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae SP195]
 gi|147927793|gb|EDK78815.1| cell division protein FtsH [Streptococcus pneumoniae SP9-BS68]
 gi|183572246|gb|EDT92774.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae SP195]
 gi|332071716|gb|EGI82209.1| cell division protease ftsH [Streptococcus pneumoniae GA17570]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|118443072|ref|YP_878374.1| clpB protein [Clostridium novyi NT]
 gi|118133528|gb|ABK60572.1| clpB protein [Clostridium novyi NT]
          Length = 866

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT ++
Sbjct: 569 LEDELKKRVIGQDEATVAVSNAV------IRARAGLKDERRPIGSFIFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LAR         I+++++++ E   V R V
Sbjct: 623 KTLARNLFDSEDNIIRIDMSEYMEKHAVSRLV 654


>gi|308804545|ref|XP_003079585.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
 gi|116058040|emb|CAL54243.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
          Length = 844

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + ++GQ +A R+V  A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 536 DLPAELHKRVVGQDEAVRSVCEAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTEL 589

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 590 CKTLASFLFNTEEAMIRIDMSEYMEKHSVSR 620


>gi|87311811|ref|ZP_01093925.1| ClpB protein [Blastopirellula marina DSM 3645]
 gi|87285485|gb|EAQ77405.1| ClpB protein [Blastopirellula marina DSM 3645]
          Length = 953

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ +A  AVA A+     R+             + + +GPTGVGKT + +
Sbjct: 649 LEERLHQRVVGQDEAVEAVANAV-----RRSRSGMQATNRPIGSFIFLGPTGVGKTELCK 703

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA +        ++++++++ E   V R
Sbjct: 704 ALAEILFDDEHAMVRIDMSEYMERHAVSR 732



 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 114/349 (32%), Gaps = 61/349 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTRE------- 149
           R+      D      +  +E ++ E R       EE I + +   T    TR        
Sbjct: 586 RDALTARMDAEVDHSDAAKEGKKPERRLLREQVTEEEIAEVVSQWTGIPVTRMIESERAK 645

Query: 150 --VFRKKLRDGEISDKEIDIEVAD-----------TSSDISNFDIPGGASVGILNLSELF 196
             V  ++L    +   E    VA+           T+  I +F   G   VG   L +  
Sbjct: 646 LLVLEERLHQRVVGQDEAVEAVANAVRRSRSGMQATNRPIGSFIFLGPTGVGKTELCKAL 705

Query: 197 SKVMGSGRKKKIRMSVQK-----CYPELM--------RDESDRLIDMDTVHRDSIQMVEN 243
           ++++       +R+ + +         L+         +E  +L        ++++    
Sbjct: 706 AEILFDDEHAMVRIDMSEYMERHAVSRLIGAPPGYVGYEEGGKL-------TEAVRR-RP 757

Query: 244 YGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--N 292
           Y ++ LDE +K         +   D G         V      +V  S++ ++       
Sbjct: 758 YSVILLDEIEKAHRDVFNILLQVLDDGRLTDNHGHTVDFTNTIVVMTSNIGSQAIQQIAA 817

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
                     A   S     LPE   R    +  K L+K   R I+      L  Q +E 
Sbjct: 818 EGGTDEEVRDAAQASLRTHFLPEFLNRIDETIVFKPLSKEQLRHIVEIQVGFLAKQLQE- 876

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
               GI L  T  + D L++   +        GAR L+ V++  L++  
Sbjct: 877 ---NGIELVITPAAKDELSEEGYD-----PTFGARPLKRVIQNQLQNAL 917


>gi|86131625|ref|ZP_01050223.1| AAA-metalloprotease FtsH, with ATPase domain [Dokdonia donghaensis
           MED134]
 gi|85818070|gb|EAQ39238.1| AAA-metalloprotease FtsH, with ATPase domain [Dokdonia donghaensis
           MED134]
          Length = 651

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +I +   + + G + AK  +      L+N  +   L   +     PK  LLVG  G GKT
Sbjct: 193 DIKTTF-KDVAGLEGAKEEIQEIVDFLKNPEKYTSLGGKI-----PKGALLVGQPGTGKT 246

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 247 LLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 287


>gi|312115440|ref|YP_004013036.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100]
 gi|311220569|gb|ADP71937.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100]
          Length = 866

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + +IGQ++A R+VA A+R      +  A L+D   P  + + +GPTGVGKT +SR LA  
Sbjct: 570 KRVIGQEEAVRSVATAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELSRALAAF 623

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                +  ++++++++ E   V R
Sbjct: 624 LFDDESAMVRIDMSEYMEKHSVAR 647


>gi|241762203|ref|ZP_04760285.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753787|ref|YP_003226680.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856522|ref|YP_163394.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|310946773|sp|C8WEG0|FTSH_ZYMMN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|241373250|gb|EER62869.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553150|gb|ACV76096.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775527|gb|AAV90283.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 662

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG     V  +      
Sbjct: 211 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKK 269

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 270 NAPCIIFIDEIDAV 283


>gi|225405623|ref|ZP_03760812.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
 gi|225042855|gb|EEG53101.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
          Length = 613

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L N  +   + A+L     PK  LLVGP G GKT ++R +A  A  PF  +  ++F
Sbjct: 189 IVDFLHNPQKYADIGANL-----PKGALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEF 243

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL   A
Sbjct: 244 VEM-FVGMGAAKV-RDLFKQA 262


>gi|254386473|ref|ZP_05001776.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
 gi|194345321|gb|EDX26287.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
          Length = 841

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 28/269 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 508 MEDELHRRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I +++++F+E   V R        +             ++VR +  
Sbjct: 562 KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 617

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 618 SVVLFDEVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNL 677

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV----HRDSIQMVEN 243
           G     +            +++  V +   +  R E    +D   V     ++ I  + +
Sbjct: 678 GFAAQGD------TKTGYDRMKAKVNEELKQHFRPEFLNRVDDTVVFHQLTQEDIIQIVD 731

Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQ 272
             I  +DE  K    D   GI +S E  Q
Sbjct: 732 LMIAKVDERLK----DRDMGIELSGEAKQ 756


>gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 700

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L++  R  +L   L     PK +LLVGP G GKT +++ +A 
Sbjct: 194 DVAGLNEAKEEVMEVVDFLKDPKRFTKLGGKL-----PKGVLLVGPPGTGKTLLAKAVAG 248

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AGAPF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 249 EAGAPFFSISGSDFVEM-FVGVGAARVRDLFKQAKEKAPCIIFIDEIDAV 297


>gi|298368650|ref|ZP_06979968.1| ATP-dependent chaperone protein ClpB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282653|gb|EFI24140.1| ATP-dependent chaperone protein ClpB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|255319673|ref|ZP_05360882.1| ATP-dependent chaperone protein ClpB [Acinetobacter radioresistens
           SK82]
 gi|262378533|ref|ZP_06071690.1| ATP-dependent chaperone ClpB [Acinetobacter radioresistens SH164]
 gi|255303290|gb|EET82498.1| ATP-dependent chaperone protein ClpB [Acinetobacter radioresistens
           SK82]
 gi|262299818|gb|EEY87730.1| ATP-dependent chaperone ClpB [Acinetobacter radioresistens SH164]
          Length = 859

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEEFLHNRVVGQDEAVIAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|296808473|ref|XP_002844575.1| heat shock protein CLPA [Arthroderma otae CBS 113480]
 gi|238844058|gb|EEQ33720.1| heat shock protein CLPA [Arthroderma otae CBS 113480]
          Length = 928

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R         + L +   P + L  GP+G GKT +++
Sbjct: 585 MEQQLSKVVIGQKEAVKSVSNAIR------LQRSGLSNPNSPPSFLFCGPSGTGKTLLTK 638

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GYVG +    + D +
Sbjct: 639 ALAEFLFDDPNAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTDGL 688


>gi|261377553|ref|ZP_05982126.1| ATP-dependent chaperone protein ClpB [Neisseria cinerea ATCC 14685]
 gi|269146293|gb|EEZ72711.1| ATP-dependent chaperone protein ClpB [Neisseria cinerea ATCC 14685]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|149921121|ref|ZP_01909579.1| ATP-dependent chaperone protein ClpB [Plesiocystis pacifica SIR-1]
 gi|149818008|gb|EDM77467.1| ATP-dependent chaperone protein ClpB [Plesiocystis pacifica SIR-1]
          Length = 906

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + ++L   +IGQ +A  AV+ A+     RQ        E    + L +GPTGVGKT +++
Sbjct: 598 MEAKLHERVIGQAEAIEAVSAAV-----RQARAGLADPERPMGSFLFLGPTGVGKTELAK 652

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA          ++++++++ E            GYVG +
Sbjct: 653 ALAEFLFDDERSVVRIDMSEYMEKFSVSRLIGAPPGYVGYD 693


>gi|15902056|ref|NP_357606.1| cell division protein FtsH [Streptococcus pneumoniae R6]
 gi|116515587|ref|YP_815436.1| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|149007703|ref|ZP_01831312.1| cell division protein FtsH [Streptococcus pneumoniae SP18-BS74]
 gi|149020171|ref|ZP_01835145.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP23-BS72]
 gi|168487654|ref|ZP_02712162.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491783|ref|ZP_02715926.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC0288-04]
 gi|194396790|ref|YP_002036734.1| cell division protein FtsH [Streptococcus pneumoniae G54]
 gi|225860059|ref|YP_002741568.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237651093|ref|ZP_04525345.1| hypothetical protein SpneC1_10351 [Streptococcus pneumoniae CCRI
           1974]
 gi|298229476|ref|ZP_06963157.1| hypothetical protein SpneCMD_02258 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|307126187|ref|YP_003878218.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           670-6B]
 gi|30315899|sp|P59652|FTSH_STRR6 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|5030426|gb|AAC16243.2| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|15457540|gb|AAK98816.1| Cell-division protein / general stress protein (class III
           heat-shock) [Streptococcus pneumoniae R6]
 gi|116076163|gb|ABJ53883.1| cell division protein FtsH [Streptococcus pneumoniae D39]
 gi|147760698|gb|EDK67670.1| cell division protein FtsH [Streptococcus pneumoniae SP18-BS74]
 gi|147930849|gb|EDK81830.1| peptidyl-tRNA hydrolase [Streptococcus pneumoniae SP23-BS72]
 gi|183569571|gb|EDT90099.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC1087-00]
 gi|183573974|gb|EDT94502.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae CDC0288-04]
 gi|194356457|gb|ACF54905.1| cell division protein FtsH [Streptococcus pneumoniae G54]
 gi|225728051|gb|ACO23902.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|306483249|gb|ADM90118.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           670-6B]
 gi|327388998|gb|EGE87346.1| hypothetical protein SPAR5_2181 [Streptococcus pneumoniae GA04375]
 gi|332071335|gb|EGI81830.1| hypothetical protein SPAR148_2237 [Streptococcus pneumoniae
           GA17545]
 gi|332077821|gb|EGI88280.1| hypothetical protein SPAR68_0035 [Streptococcus pneumoniae GA41301]
 gi|332198670|gb|EGJ12753.1| hypothetical protein SPAR69_2248 [Streptococcus pneumoniae GA41317]
 gi|332198877|gb|EGJ12959.1| ATP-dependent metallopeptidase HflB family protein [Streptococcus
           pneumoniae GA47368]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
 gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
          Length = 660

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +A   +   +R+     + P   R     +P  +LLVGP G GKT +++ +A  
Sbjct: 189 DVAGIDEAVEELEE-VRDF---LREPERYRKMGAKIPHGVLLVGPPGTGKTLLAKAVAGE 244

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 245 AGVPFFSISGSDFVEM-FVGVGASRV-RDLFKQA 276


>gi|317052480|ref|YP_004113596.1| ATP-dependent metalloprotease FtsH [Desulfurispirillum indicum S5]
 gi|316947564|gb|ADU67040.1| ATP-dependent metalloprotease FtsH [Desulfurispirillum indicum S5]
          Length = 651

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK     +   L++  +  +L   +     PK +LL+G  G GKT +++ +A
Sbjct: 154 QDVAGIDEAKDDLVEIVEFLKDPKKFTKLGGKI-----PKGVLLMGSPGTGKTLLAKAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 209 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 258


>gi|213693220|ref|YP_002323806.1| ATPase AAA-2 domain protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524681|gb|ACJ53428.1| ATPase AAA-2 domain protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320459400|dbj|BAJ70021.1| Clp protease [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 890

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|153011782|ref|YP_001372995.1| ATPase [Ochrobactrum anthropi ATCC 49188]
 gi|151563670|gb|ABS17166.1| ATPase AAA-2 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 964

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   +IGQ++A RAVA A+     R                L +GPTGVGKT ++
Sbjct: 612 KLEEKLHERVIGQEEAIRAVADAV-----RLARAGLREGRGPTATFLFLGPTGVGKTELA 666

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +        I+++++++ E   V R V
Sbjct: 667 KTLAEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|332199080|gb|EGJ13161.1| hypothetical protein SPAR120_2247 [Streptococcus pneumoniae
           GA47901]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|329119993|ref|ZP_08248665.1| chaperone protein ClpB [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463906|gb|EGF10220.1| chaperone protein ClpB [Neisseria bacilliformis ATCC BAA-1200]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|309389961|gb|ADO77841.1| ATPase AAA-2 domain protein [Halanaerobium praevalens DSM 2228]
          Length = 806

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL   +IGQ +A  AV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 501 LESELHERVIGQDEAINAVSEAV-----RRARAGLKAPKRPIGSFIFLGPTGVGKTELAK 555

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LA          I+V+++++ E   V R V  
Sbjct: 556 TLAETMFNDEEAMIRVDMSEYMEKHSVSRLVGS 588


>gi|293392742|ref|ZP_06637060.1| chaperone protein ClpB [Serratia odorifera DSM 4582]
 gi|291424601|gb|EFE97812.1| chaperone protein ClpB [Serratia odorifera DSM 4582]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 LEQELHSRVIGQDEAVTAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|260654193|ref|ZP_05859683.1| cell division cycle protein 48-like protein [Jonquetella anthropi
           E3_33 E1]
 gi|260631178|gb|EEX49372.1| cell division cycle protein 48-like protein [Jonquetella anthropi
           E3_33 E1]
          Length = 682

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV---- 107
            PK +LL GP G GKT I+R +A+   A F  +   +     Y G + E++ RDL     
Sbjct: 199 PPKGVLLYGPPGTGKTLIARAVAQETDAWFASISGPEIIGK-YYGESEERL-RDLFTQAQ 256

Query: 108 DVAINIVRESRRDEVREQ-----ASINAEERI-------LDALVGKT-----ATSNTREV 150
             A  +V     D +  +     A    E R+       LD L  ++     A +N  + 
Sbjct: 257 QNAPAVVFIDELDAIAPRRQDMGAEKQVERRVVSQLLTLLDGLPARSQVVVMAATNLPDS 316

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184
               LR     D+EI+I +    +      +   
Sbjct: 317 IDPALRRPGRFDREIEIPMPTRQARKEILAVHCQ 350


>gi|215408555|emb|CAR31127.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 166

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|160916167|ref|ZP_02078374.1| hypothetical protein EUBDOL_02194 [Eubacterium dolichum DSM 3991]
 gi|158431891|gb|EDP10180.1| hypothetical protein EUBDOL_02194 [Eubacterium dolichum DSM 3991]
          Length = 663

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   
Sbjct: 194 RIPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASRVRDMFKKAA 252

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 253 QAAPCIVFIDEIDAV 267


>gi|114562161|ref|YP_749674.1| ATP-dependent metalloprotease FtsH [Shewanella frigidimarina NCIMB
           400]
 gi|114333454|gb|ABI70836.1| membrane protease FtsH catalytic subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 657

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   LR+  + Q+L   +     P  +L+VG  G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEEVKELVDYLRDPTKFQKLGGRI-----PTGVLMVGQPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 213 ESKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 245


>gi|119387548|ref|YP_918582.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans
           PD1222]
 gi|119378123|gb|ABL72886.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans
           PD1222]
          Length = 610

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +   + R           +PK +LLVGP G GKT ++R +A  AG
Sbjct: 157 DVAGVDEAKAELQEIIA--FLRDPEGYGRLGARIPKGVLLVGPPGTGKTLLARAVAGEAG 214

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             F+ +  ++F E+ +VG    ++ RDL + A
Sbjct: 215 VTFLSISGSEFVEL-FVGVGAARV-RDLFEQA 244


>gi|329939309|ref|ZP_08288645.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329301538|gb|EGG45432.1| ATP-dependent protease ATP-binding subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 865

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEEELGRRLIGQGEAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|309378342|emb|CBX23039.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|284800044|ref|ZP_05985536.2| ATP-dependent metalloprotease FtsH [Neisseria subflava NJ9703]
 gi|284796222|gb|EFC51569.1| ATP-dependent metalloprotease FtsH [Neisseria subflava NJ9703]
          Length = 653

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      NR++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPNRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|225023847|ref|ZP_03713039.1| hypothetical protein EIKCOROL_00713 [Eikenella corrodens ATCC
           23834]
 gi|224943321|gb|EEG24530.1| hypothetical protein EIKCOROL_00713 [Eikenella corrodens ATCC
           23834]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|221230961|ref|YP_002510113.1| cell division protease FtsH [Streptococcus pneumoniae ATCC 700669]
 gi|225853624|ref|YP_002735136.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae JJA]
 gi|220673421|emb|CAR67879.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae ATCC 700669]
 gi|225722317|gb|ACO18170.1| putative Cell division protease FtsH homolog [Streptococcus
           pneumoniae JJA]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|199598785|ref|ZP_03212197.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
 gi|199590290|gb|EDY98384.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001]
          Length = 716

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 190 DVAGAEEEKQELVEVVEFLKDPRKFSALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 277


>gi|254427099|ref|ZP_05040806.1| ATPase, AAA family [Alcanivorax sp. DG881]
 gi|196193268|gb|EDX88227.1| ATPase, AAA family [Alcanivorax sp. DG881]
          Length = 863

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 563 MEEALHDRVVGQDEAVEAVANAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 617 KALANFLFDTEEAMVRIDMSEFMEKHSVARLV 648


>gi|187735338|ref|YP_001877450.1| ATP-dependent chaperone ClpB [Akkermansia muciniphila ATCC BAA-835]
 gi|187425390|gb|ACD04669.1| ATP-dependent chaperone ClpB [Akkermansia muciniphila ATCC BAA-835]
          Length = 860

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+ A +AV+ A+R      +  A L+DE  P  + L +GPTGVGKT +S
Sbjct: 565 MEERLGARVIGQKQAVKAVSDAVR------RARAGLQDENRPIGSFLFLGPTGVGKTELS 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 619 KALAEFLFDNENAIVRIDMSEYMEKHSVAR 648


>gi|160901847|ref|YP_001567428.1| ATPase [Petrotoga mobilis SJ95]
 gi|160359491|gb|ABX31105.1| ATPase AAA-2 domain protein [Petrotoga mobilis SJ95]
          Length = 830

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           + + L   ++GQ +A ++VA A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 508 LEAVLHERVVGQDEAIKSVAKAIR------RARSGLKDPRRPTGVFMFLGPTGVGKTELA 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          ++++++++ E            GYVG +
Sbjct: 562 KTLATYLFGNETHLVRIDMSEYMEKFSVSRLVGAPPGYVGYD 603


>gi|297570431|ref|YP_003691775.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926346|gb|ADH87156.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 764

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + + L   I GQ  A  A+  A+    +R +     R E      L  GPTGVGKT +
Sbjct: 467 RLLETMLKSQIFGQDQAISALTGAV----KRSR-AGIKRPEGPTGAFLFAGPTGVGKTEL 521

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +R+LA      F + +++++ E            GYVG +   ++ + +    + 
Sbjct: 522 ARQLAANLSIHFERFDMSEYMEKHAVSRLIGSPPGYVGFDQGGLLTEAIRKHPHS 576


>gi|261364438|ref|ZP_05977321.1| ATP-dependent chaperone protein ClpB [Neisseria mucosa ATCC 25996]
 gi|288567348|gb|EFC88908.1| ATP-dependent chaperone protein ClpB [Neisseria mucosa ATCC 25996]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|163784726|ref|ZP_02179537.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880005|gb|EDP73698.1| cell division protein FtsH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 628

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 18/209 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K  V   + +  +  Q    L     PK IL  G  GVGKT +++ +A  A
Sbjct: 153 DDVAGMDEVKEEVKEII-DFLKDPQRFQKLGG-RAPKGILFYGDPGVGKTLLAKAIAGEA 210

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQASINAEER 133
             PFI +  + F E+ +VG    ++ RDL +     A  +V     D V  +A       
Sbjct: 211 NVPFISISGSDFVEM-FVGVGAARV-RDLFETAKKHAPCLVFIDEIDAV-GRARSGV--- 264

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
                 G     + RE    +L          +  +   +++  +   P     G  +  
Sbjct: 265 ------GFGGGHDEREQTLNQLLVELDGFDSNEGIIVIAATNRPDILDPALLRPGRFDRQ 318

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRD 222
               K    GR + +++ V+K    L  D
Sbjct: 319 ISVPKPDVKGRYEILKVHVKKKNIPLGDD 347


>gi|147797811|emb|CAN74077.1| hypothetical protein VITISV_000978 [Vitis vinifera]
          Length = 663

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G   AK  +           Q    L  ++ PK  LLVGP G GKT ++R +A  AG
Sbjct: 253 DVAGADQAKLEL-----------QEYTALGAKI-PKGCLLVGPPGTGKTLLARAVAGEAG 300

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF     ++F E+ +VG    ++ RDL + A
Sbjct: 301 VPFFSCAASEFVEL-FVGVGASRV-RDLFEKA 330


>gi|153006164|ref|YP_001380489.1| ATPase [Anaeromyxobacter sp. Fw109-5]
 gi|152029737|gb|ABS27505.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 935

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A  AV+ A+     R                  +GPTGVGKT ++
Sbjct: 592 QMEERLHQRVIGQDEAVHAVSEAV-----RLARAGLKDRRRPVATFFFLGPTGVGKTELA 646

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA L        ++++++++ E   V R
Sbjct: 647 RALAELVFGDEDAMVRIDMSEYMERHTVAR 676


>gi|19076014|ref|NP_588514.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1
           (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74582247|sp|O59824|YME1_SCHPO RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|3136033|emb|CAA19064.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1
           (predicted) [Schizosaccharomyces pombe]
          Length = 709

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 23/142 (16%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      LR+     +L   L     P+ +LL GP G GKT ++R +A 
Sbjct: 268 DVQGVDEAKEELEEIVDFLRDPTHFTRLGGKL-----PRGVLLTGPPGTGKTMLARAVAG 322

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  ++F E+ YVG   +++ R+L   A            R+QA        L
Sbjct: 323 EANVPFFFMSGSQFDEM-YVGVGAKRV-RELFAAA------------RKQAPSIIFIDEL 368

Query: 136 DALVGKTATSNTREVFRKKLRD 157
           DA+ G+   +      R+ L  
Sbjct: 369 DAI-GQKRNARDAAHMRQTLNQ 389


>gi|331265451|ref|YP_004325081.1| cell-division protein [Streptococcus oralis Uo5]
 gi|326682123|emb|CBY99739.1| cell-division protein [Streptococcus oralis Uo5]
          Length = 652

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|325921790|ref|ZP_08183609.1| ATP-dependent chaperone ClpB [Xanthomonas gardneri ATCC 19865]
 gi|325547722|gb|EGD18757.1| ATP-dependent chaperone ClpB [Xanthomonas gardneri ATCC 19865]
          Length = 802

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 503 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 557 KALADFLFDSTEAMIRIDMSEFMEKHSVSR 586


>gi|319638313|ref|ZP_07993076.1| chaperone ClpB [Neisseria mucosa C102]
 gi|317400586|gb|EFV81244.1| chaperone ClpB [Neisseria mucosa C102]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|296454972|ref|YP_003662116.1| ATPase domain-containing protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184404|gb|ADH01286.1| ATPase AAA-2 domain protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 889

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|294788087|ref|ZP_06753331.1| ATP-dependent chaperone protein ClpB [Simonsiella muelleri ATCC
           29453]
 gi|294484380|gb|EFG32063.1| ATP-dependent chaperone protein ClpB [Simonsiella muelleri ATCC
           29453]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A RAVA A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 562 KMEEVLHKRVIGQDEAVRAVADAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   + R
Sbjct: 616 CKTLASFLFDSEDHLIRIDMSEYMEKHSIAR 646


>gi|292487321|ref|YP_003530193.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora CFBP1430]
 gi|291552740|emb|CBA19785.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora CFBP1430]
 gi|312171427|emb|CBX79686.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQQ+A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHTRVIGQQEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|294669705|ref|ZP_06734772.1| hypothetical protein NEIELOOT_01606 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308618|gb|EFE49861.1| hypothetical protein NEIELOOT_01606 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|261820453|ref|YP_003258559.1| protein disaggregation chaperone [Pectobacterium wasabiae WPP163]
 gi|261604466|gb|ACX86952.1| ATP-dependent chaperone ClpB [Pectobacterium wasabiae WPP163]
          Length = 858

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|271962096|ref|YP_003336292.1| ATPase AAA [Streptosporangium roseum DSM 43021]
 gi|270505271|gb|ACZ83549.1| ATPase AAA-2 [Streptosporangium roseum DSM 43021]
          Length = 860

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ++A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 562 MEEELGRRLIGQKEAVQAVSDAV-----RRARAGISDPDRPTGSFLFLGPTGVGKTELAK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 617 SLADFLFDDERAMVRIDMSEYGEKHSVARLV 647


>gi|226953127|ref|ZP_03823591.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter sp. ATCC 27244]
 gi|226836125|gb|EEH68508.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter sp. ATCC 27244]
          Length = 859

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + S L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MESFLHNRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|237809508|ref|YP_002893948.1| ATP-dependent chaperone ClpB [Tolumonas auensis DSM 9187]
 gi|237501769|gb|ACQ94362.1| ATP-dependent chaperone ClpB [Tolumonas auensis DSM 9187]
          Length = 858

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AVA A+R      +  A L D + P  + L +GPTGVGKT + 
Sbjct: 562 MEEKLHQRVIGQDEAVNAVANAIR------RSRAGLSDPMRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAEFLFDTQDAMVRIDMSEFMEKHSVARLV 647


>gi|158430509|pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
          Length = 262

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 6   KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 60

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 61  TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113


>gi|148244302|ref|YP_001218996.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
 gi|146326129|dbj|BAF61272.1| cell division protein FtsH [Candidatus Vesicomyosocius okutanii HA]
          Length = 640

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     +   L +  +  ++   +     PK +LLVGP G GKT +++ +A
Sbjct: 151 DDVAGVDEAKDDVSELVDFLSDPGKFTKVGGKI-----PKGVLLVGPPGTGKTLLAKAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 206 GEADVPFFFISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 255


>gi|54027376|ref|YP_121618.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
 gi|54018884|dbj|BAD60254.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM
           10152]
          Length = 853

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R ++GQ++A +AV+ A+     R+             + + VGPTGVGKT +++
Sbjct: 566 MEDELGRRVVGQKEAVQAVSDAV-----RRARAGVADPNRPTGSFMFVGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYSEKHAVARLV 651



 Score = 38.0 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 45/270 (16%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           VAD +    +F   G   VG   L++  +  +    +  +R+ + +      +    RL+
Sbjct: 595 VADPNRPTGSFMFVGPTGVGKTELAKALADFLFDDERAMVRIDMSE---YSEKHAVARLV 651

Query: 229 ---------DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
                    D      ++++    Y +V  DE +K              +     L  L 
Sbjct: 652 GAPPGYVGYDQGGQLTEAVRR-RPYTVVLFDEIEK-----------AHPDVFDILLQVLD 699

Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLL---------PEIQGRFPVRVHLKSLN 330
           EG     +  +++  + + I +         + +         PE   R    V   +L+
Sbjct: 700 EGRLTDGQGRTVDFRNTILILTSNLGAGGDQEFVMNAVRAAFKPEFLNRLDDVVMFHALD 759

Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390
           +     I+       + Q ++ +    + LD T  +   LA     +       GAR L+
Sbjct: 760 EEQLEHIV----DIQLEQLQKRLAQRRLTLDVTGSARFWLA-----VRGYDPVYGARPLR 810

Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVR 420
            ++++ + D    A +L   TV  D + V+
Sbjct: 811 RLIQQAIGDTL--AKELLAGTVT-DGDTVK 837


>gi|325108972|ref|YP_004270040.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
 gi|324969240|gb|ADY60018.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis
           DSM 5305]
          Length = 751

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +E V      + G ++A    R +   LR   + Q L   +     P+ +LLVGP G GK
Sbjct: 246 QEDVKTTFNDVAGIEEAVGELREIVEFLRTPAKYQALGGRI-----PRGVLLVGPPGTGK 300

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           T +++ +A  AG PF  +  + F E+ +VG    ++ RD    AI
Sbjct: 301 TLLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAARV-RDTFQQAI 343


>gi|309782665|ref|ZP_07677386.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
 gi|308918443|gb|EFP64119.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA]
          Length = 647

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  ++  +   +   R Q L   +     PK +LLVG  G GKT +++ +A 
Sbjct: 174 DVAGIDEAKDELSEIVSFLKEPLRYQLLGGRI-----PKGVLLVGAPGTGKTLLAKAVAG 228

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 229 EAGVPFFSMSGSEFVEM-FVGVGAARV-RDLFSQA 261


>gi|302543748|ref|ZP_07296090.1| ATP-dependent chaperone ClpB [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461366|gb|EFL24459.1| ATP-dependent chaperone ClpB [Streptomyces himastatinicus ATCC
           53653]
          Length = 864

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 569 MEDELGRRLIGQTEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 623

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 624 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 654


>gi|226941814|ref|YP_002796888.1| HflB [Laribacter hongkongensis HLHK9]
 gi|226716741|gb|ACO75879.1| HflB [Laribacter hongkongensis HLHK9]
          Length = 636

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   R +   LR+  R Q L        +P+ ILL G  G GKT +++ +A 
Sbjct: 160 DVAGCDEAKEEVREIVDYLRDPTRYQSLGGH-----VPRGILLAGSPGTGKTLLAKAIAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 215 EAKVPFFSISGSDFVEM-FVGVGAARV-RDMFENAKKN 250


>gi|226364401|ref|YP_002782183.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           opacus B4]
 gi|226242890|dbj|BAH53238.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Rhodococcus opacus B4]
          Length = 806

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL R ++GQ DA RA+A A+R    R +   +  D     + L +GPTGVGKT +
Sbjct: 499 RRLEDELHRRVVGQDDAVRAIARAVR----RSRTGMNDPD-RPVGSFLFLGPTGVGKTEL 553

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          +++++++F E   V R V
Sbjct: 554 AKALAATLFGDENKMLRLDMSEFGERHTVSRLV 586



 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 28/176 (15%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y ++ LDE +K         +   D G         V      L+  S++ +   S  +
Sbjct: 609 PYSVILLDEIEKAHPDVFNTLLQVLDDGRLTDGQGRTVDFKNTVLIMTSNLGSDIISSKS 668

Query: 294 DHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
             + F    A    +P            + PE   R    V  + L+      I      
Sbjct: 669 GALGFATGDAEAAEKPLRDRVMGRLRESMRPEFLNRIDEIVIFRKLDTDQLHRIT----D 724

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            L+   ++ ++++GI + F++ ++D +A+     +    + GAR L+  ++R ++D
Sbjct: 725 LLLDDSRKRLQSKGIEISFSDAAVDWIAE-----HGHQPEFGARPLRRSIQRAVDD 775


>gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
 gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
          Length = 692

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDA---KRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+ +A      +   L++  + + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 213 DVAGEDEALAEVEEIKDFLKDPSKYKALGARI-----PRGVLLYGPPGTGKTLLARAIAG 267

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 268 EAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEAKKN 303


>gi|261856348|ref|YP_003263631.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Halothiobacillus neapolitanus c2]
 gi|261836817|gb|ACX96584.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Halothiobacillus neapolitanus c2]
          Length = 758

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 20/120 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S RE++  LDR     + GQ+DA   +  ++     R         +    + L  GPTG
Sbjct: 443 SDREVLRHLDRNLNMVVFGQEDAIEQITTSI-----RMARSGLRTADKPIGSYLFAGPTG 497

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT +S++LARL G   ++ +++++ E            GYVG +   ++ + ++   +
Sbjct: 498 VGKTEVSKQLARLLGIKLVRFDMSEYMERHSVSRLIGAPPGYVGFDEGGLLTEAINKTPH 557


>gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 713

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 80/219 (36%), Gaps = 21/219 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            PK +LL GP G GKT +++ +A    A FI +   +     Y G + E+I         
Sbjct: 210 APKGVLLYGPPGTGKTLLAKAVAGETNAHFISLSGPEIMGK-YYGESEEKIREIFNQAEE 268

Query: 112 NIVRESRRDEV------REQASINAEERILDALVGKTATSNTR------------EVFRK 153
           N       DE+      R++ S   E+RI+  L+       +R            +    
Sbjct: 269 NSPSIIFIDEIDSIAPKRDEVSGEVEKRIVSQLLTLMDGMKSRGKVVVIAATNRPDSIDP 328

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIP--GGASVGILNLSELFSKVMGSGRKKKIRMS 211
            LR     D+EI+I + D         I   G      ++L ++     G        +S
Sbjct: 329 ALRRPGRFDREIEIGIPDDEGRFEILSIHTRGMPIDEKVDLKQISKTTHGFVGADLEVLS 388

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250
            +     L R   +  +D D +  + +Q +E     F D
Sbjct: 389 KEAAMRSLRRILPEIDLDEDKISAEILQKIEITSEDFRD 427



 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  + K  +  A+    +  +   D  D   PK ILL GP G GKT I++ LA++ 
Sbjct: 450 DDVGGLDELKEELREAVEWPIKH-KEAFDYVDVETPKGILLHGPPGTGKTLIAKALAKMT 508

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEVREQ 125
            + FI ++  +     +VG     V +I R     A  I+     D +  +
Sbjct: 509 ESNFISIKGPELL-SKWVGESEKGVREIFRKARQAAPCIIFLDEVDALVPR 558


>gi|99035121|ref|ZP_01314905.1| hypothetical protein Wendoof_01000251 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 768

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 18/101 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ + GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVVFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA   G   I+ +++++ E            GYVG +
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISRMIGSPPGYVGYD 564


>gi|21673032|ref|NP_661097.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Chlorobium
           tepidum TLS]
 gi|21646098|gb|AAM71439.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Chlorobium
           tepidum TLS]
          Length = 854

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 99/254 (38%), Gaps = 42/254 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A + +  A+      Q+  A L+D   P  + + +GPTGVGKT ++
Sbjct: 524 MEAELKKEVIGQDEAIKKITKAI------QRTRAGLKDPSRPIGSFIFLGPTGVGKTELA 577

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 578 KALTRYLFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 637

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + +
Sbjct: 638 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------LGRKVDFRNTIIIMTSNIGAKE 686

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I +F   GG      +          +G  K ++ +++     +   E    ID DT+  
Sbjct: 687 IKSFSTGGGMGFAPPSD--------ATGDYKAMKSTIEDALKRVFNPEFLNRID-DTIVF 737

Query: 236 DSIQMVENYGIVFL 249
             ++  + + I+ +
Sbjct: 738 HQLEKSDIFKIIDI 751


>gi|313890361|ref|ZP_07823992.1| chaperone protein ClpB [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121204|gb|EFR44312.1| chaperone protein ClpB [Streptococcus pseudoporcinus SPIN 20026]
          Length = 813

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT ++
Sbjct: 508 QLEKELHKRVIGQDEAISAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELA 562

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA +     +  I+ +++++ E            GYVG +
Sbjct: 563 KALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYD 604


>gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
 gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
          Length = 710

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  ++     R      + G  + K+ +      L++  + +++ + +     PK
Sbjct: 145 MNFGKSKAKMYDNQKRRVRFSDVAGADEEKQELIEIVDFLKDNKKFKKMGSRI-----PK 199

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 200 GVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|225075318|ref|ZP_03718517.1| hypothetical protein NEIFLAOT_00321 [Neisseria flavescens
           NRL30031/H210]
 gi|224953493|gb|EEG34702.1| hypothetical protein NEIFLAOT_00321 [Neisseria flavescens
           NRL30031/H210]
          Length = 857

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|213409774|ref|XP_002175657.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212003704|gb|EEB09364.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 629

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I G +DAK ++  A+   + R +L   LR+ +  + +LL GP G GKT +++ +A  A 
Sbjct: 350 DIAGLEDAKNSLKEAVIYPFLRPELFCGLREPV--QGMLLFGPPGTGKTMLAKAVATEAK 407

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F  +  +  T   Y+G + E+++R L  VA    
Sbjct: 408 ATFFSISASSLT-SKYLGES-EKLVRALFTVAKRQP 441


>gi|121597791|ref|YP_989640.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei SAVP1]
 gi|121225589|gb|ABM49120.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           SAVP1]
          Length = 852

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 356 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 408

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 409 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 444


>gi|170727901|ref|YP_001761927.1| ATP-dependent metalloprotease FtsH [Shewanella woodyi ATCC 51908]
 gi|169813248|gb|ACA87832.1| ATP-dependent metalloprotease FtsH [Shewanella woodyi ATCC 51908]
          Length = 657

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVKELVDYLKEPTKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|50122267|ref|YP_051434.1| protein disaggregation chaperone [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612793|emb|CAG76243.1| ClpB protein (heat shock protein f84.1) [Pectobacterium
           atrosepticum SCRI1043]
          Length = 858

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|313885400|ref|ZP_07819150.1| negative regulator of genetic competence ClpC/MecB [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619130|gb|EFR30569.1| negative regulator of genetic competence ClpC/MecB [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 819

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK+T +     +  EL   +IGQ++A  +V+ A+R  +   + P          + L +G
Sbjct: 502 MKMTESKRLVHLEEELHERVIGQEEAVSSVSRAIRRAYSGLKNPN-----RPIGSFLFLG 556

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           PTGVGKT +++ LA          I+V+++++ E   V R V
Sbjct: 557 PTGVGKTELAKALASAMFGSQDNMIRVDMSEYMEKHTVSRLV 598


>gi|296132448|ref|YP_003639695.1| ATP-dependent chaperone ClpB [Thermincola sp. JR]
 gi|296031026|gb|ADG81794.1| ATP-dependent chaperone ClpB [Thermincola potens JR]
          Length = 868

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A RAVA A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 566 LDEELHKRVVGQDEAVRAVADAV------LRARAGIKDPNRPIGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA+         I+++++++ E   V R
Sbjct: 620 RALAQALFDDERNMIRLDMSEYMEKHTVAR 649


>gi|153005199|ref|YP_001379524.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
 gi|152028772|gb|ABS26540.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5]
          Length = 634

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV- 109
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL +  
Sbjct: 186 RIPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQG 243

Query: 110 ---AINIVRESRRDEV 122
              A  I+     D V
Sbjct: 244 KKNAPCIIFIDEIDAV 259


>gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
 gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916]
          Length = 638

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+    V   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVSEAKQDLQEVVTFLKQPERFTSVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKRAKENSPCLIFIDEIDAV 285


>gi|219666214|ref|YP_002456649.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219536474|gb|ACL18213.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 657

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A 
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAK 246

Query: 112 NI 113
             
Sbjct: 247 KN 248


>gi|322804680|emb|CBZ02232.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 576

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK   + +   L+N  +     A +     PK I+L G  G GKT +++ +A  
Sbjct: 153 VAGNEEAKESVKDIVDFLKNPEKYSSYGARM-----PKGIILYGDPGTGKTLMAKAVAGE 207

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE----SRRDEV-REQASINA- 130
           AG PF  +  + F ++ YVG    +I R L   A +  +        D + ++++S  A 
Sbjct: 208 AGVPFYAMSGSDFVQV-YVGVGASRI-RQLFKKARSKGKAVIFIDEIDAIGKKRSSEKAG 265

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             EER      +L  + G             N  ++  + L      D+ I++ + D  +
Sbjct: 266 GSEERDQTLNALLTEMSGFNEKEGIIIMAATNRLDILDEALLRPGRFDRHIEVNLPDVVA 325

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                ++            + ++K        KI   + +      ++ S ++ D
Sbjct: 326 REKILNLHLKNKPIGNINIKDWAKKTAYFSGAKIENLLNEAAILACKENSIKIED 380


>gi|322388492|ref|ZP_08062095.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
 gi|321140805|gb|EFX36307.1| cell division protein FtsH [Streptococcus infantis ATCC 700779]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +     + ++  + V      L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGR--PDVKGREAILKVHARNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|312277431|gb|ADQ62088.1| ATP-dependent metalloprotease FtsH [Streptococcus thermophilus
           ND03]
          Length = 637

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 38/240 (15%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F
Sbjct: 181 IVDFLKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDF 235

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL------VGKTA 143
            E+ +VG    ++ R L + A          +  E+A I  +E  +DA+           
Sbjct: 236 VEM-FVGVGASRV-RSLFEDA----------KKAERAIIFIDE--IDAVGRRRGTGMGGG 281

Query: 144 TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203
                +   + L + +  D   +I +   +++ S+   P     G  +   L  +    G
Sbjct: 282 NDEREQTLNQLLIEMDGFDGNENI-IVIAATNRSDILDPALLRPGRFDRKVLVGRPDVKG 340

Query: 204 RKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYGIVFLDEFD 253
           R+  +++  +     L  D + +++          D++ V  ++  +    G   +D  D
Sbjct: 341 REAILKVHAKN--KPLAEDVNLKVVAQQTPGFVGADLENVLNEAALVAARRGKTKIDASD 398


>gi|306824225|ref|ZP_07457595.1| chaperone protein ClpB [Bifidobacterium dentium ATCC 27679]
 gi|304552428|gb|EFM40345.1| chaperone protein ClpB [Bifidobacterium dentium ATCC 27679]
          Length = 917

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 612 MEEYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 666

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 667 ALADFLFDDEKAMVRIDMSEYMEKASVSR 695


>gi|119897857|ref|YP_933070.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Azoarcus sp.
           BH72]
 gi|119670270|emb|CAL94183.1| probable ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Azoarcus sp. BH72]
          Length = 860

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 563 KMEERLHGRVVGQDEAVRLVSDAIR------RSRAGLADENRPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 617 CKTLAEFLFDSEEHLIRIDMSEFMEKHSVAR 647


>gi|90409009|ref|ZP_01217139.1| cell division protein FtsH [Psychromonas sp. CNPT3]
 gi|90309894|gb|EAS38049.1| cell division protein FtsH [Psychromonas sp. CNPT3]
          Length = 649

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 153 DVAGCDEAKEDVKELVDYLKDSTKFQRLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 208 EAKVPFFAISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 256


>gi|312133769|ref|YP_004001108.1| clpa2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773050|gb|ADQ02538.1| ClpA2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 889

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|254472239|ref|ZP_05085639.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062]
 gi|211958522|gb|EEA93722.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062]
          Length = 859

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQQ+A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 563 MEDELAKRVVGQQEAVHAVSTAVR------RSRAGLQDPNRPIGSFMFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 617 KALASYLFDDETAMVRVDMSEFMEKHSVAR 646


>gi|197122472|ref|YP_002134423.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
 gi|196172321|gb|ACG73294.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K]
          Length = 705

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG 
Sbjct: 230 YRRLGG-------RIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGV 281

Query: 98  NVEQIIRDLVDVA 110
              ++ RDL   A
Sbjct: 282 GAARV-RDLFAQA 293


>gi|328957095|ref|YP_004374481.1| ATP-dependent Clp protease [Carnobacterium sp. 17-4]
 gi|328673419|gb|AEB29465.1| ATP-dependent Clp protease [Carnobacterium sp. 17-4]
          Length = 729

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L +++IGQ +A   V+ A+R    R    +  R      + L VGPTGVGKT +
Sbjct: 412 RNLGEDLKKHVIGQDEAIEKVSRAIR--RNRIGFNSKNR---PIGSFLFVGPTGVGKTEL 466

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           +++LA         +I+ +++++ E   V + +  
Sbjct: 467 AKQLALELFGSKDAYIRFDMSEYMEKHSVSKLIGS 501



 Score = 38.4 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   RF   V   SL K +   I+      LI     +++ +GI ++  + + + L ++
Sbjct: 604 PEFINRFDGIVEFNSLTKENLLYIV----DLLIADVNNMLEHQGISIEVDQSAKEKLVEL 659

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             +       +GAR L+ V++  +ED
Sbjct: 660 GYDPK-----LGARPLRRVIQEQIED 680


>gi|296314090|ref|ZP_06864031.1| ATP-dependent chaperone protein ClpB [Neisseria polysaccharea ATCC
           43768]
 gi|296839347|gb|EFH23285.1| ATP-dependent chaperone protein ClpB [Neisseria polysaccharea ATCC
           43768]
          Length = 857

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|258515243|ref|YP_003191465.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
 gi|257778948|gb|ACV62842.1| ATP-dependent chaperone ClpB [Desulfotomaculum acetoxidans DSM 771]
          Length = 863

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 564 LDEELHKRVIGQDEAVRAVADAV------LRARAGIKDPNRPIGSFIFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA+         I+++++++ E   V R
Sbjct: 618 RSLAQALFDDEKNIIRLDMSEYMEKHTVSR 647


>gi|238027045|ref|YP_002911276.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           glumae BGR1]
 gi|237876239|gb|ACR28572.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           glumae BGR1]
          Length = 865

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   +IGQ++A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVIGQEEAIDAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEVC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|15899962|ref|NP_344566.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
 gi|18266790|sp|O69076|FTSH_STRPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|14971477|gb|AAK74206.1| cell division protein FtsH [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|148547674|ref|YP_001267776.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|310946757|sp|A5W382|FTSH_PSEP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|148511732|gb|ABQ78592.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
          Length = 615

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  D K  +   + +  + +   A L   + PK  LLVGP G GKT +++ +A  A 
Sbjct: 159 DVAGIDDVKGELTEIV-SFLKNKAWYARLGAHV-PKGTLLVGPPGTGKTLVAKAIAGEAA 216

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 217 VPFFSISGSEFVEM-FVGVGAARV-RDLFDQA 246


>gi|319901560|ref|YP_004161288.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108]
 gi|319416591|gb|ADV43702.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108]
          Length = 864

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 109/309 (35%), Gaps = 26/309 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQEEAIEAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           + LA           +++++++ E   V R V      +       + E+ R +      
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVIL 673

Query: 124 ----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +    +L  L     T N       K     ++       +      ++  
Sbjct: 674 FDEIEKAHPDVFNILLQVLDDGRLTDNKGRTVNFKNTIIIMTSNMGSGYIQSQMEKLNGS 733

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +           +  +  K +      +I  ++   +  L   E  +++ +      ++ 
Sbjct: 734 NKEEVTEETKKEVMNMLKKTIRPEFLNRIDETIM--FLPLTEKEIRQIVVLQIKSVQNML 791

Query: 240 MVENYGIVFLDE-FDKIVARDSGNGIGVS--REGVQRDLLPLVEGSSVSTKYGSINTDHI 296
                 +   D   D +         G    +  +Q  LL  +    ++ +   ++    
Sbjct: 792 SGNGVDLALTDSAIDFLANTGYDPEFGARPVKRAIQHYLLNDLSKKLLAQE---VDRSKP 848

Query: 297 LFIASGAFH 305
           + I + A +
Sbjct: 849 ILIDANATN 857


>gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
          Length = 710

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELDR-----YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  S  ++     R      + G  + K+ +      L++  + +++ + +     PK
Sbjct: 145 MNFGKSKAKMYDNQKRRVRFSDVAGADEEKQELIEIVDFLKDNKKFKKMGSRI-----PK 199

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LLVGP G GKT ++R +A  AGAPF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 200 GVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 256


>gi|306828584|ref|ZP_07461778.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
 gi|304429192|gb|EFM32278.1| cell division protein FtsH [Streptococcus mitis ATCC 6249]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|301793338|emb|CBW35697.1| putative putative cell division protease FtsH [Streptococcus
           pneumoniae INV104]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|302547999|ref|ZP_07300341.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465617|gb|EFL28710.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 845

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L + +IGQ++A  AV+ A+       +  A L D   P    L +GPTGVGKT ++
Sbjct: 534 LEEHLHKRVIGQEEAVAAVSDAV------LRSRAGLADPHRPSGSFLFLGPTGVGKTELA 587

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 588 RALAEALFGSEDRMIRLDMSEYQEKHTVSRLV 619


>gi|253990664|ref|YP_003042020.1| protein disaggregation chaperone [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782114|emb|CAQ85278.1| chaperone clpb [Photorhabdus asymbiotica]
          Length = 857

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHKRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|227329202|ref|ZP_03833226.1| protein disaggregation chaperone [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 858

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|227115221|ref|ZP_03828877.1| protein disaggregation chaperone [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 858

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|225855748|ref|YP_002737259.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
 gi|225724440|gb|ACO20292.1| ATP-dependent metallopeptidase HflB [Streptococcus pneumoniae
           P1031]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|223983241|ref|ZP_03633435.1| hypothetical protein HOLDEFILI_00715 [Holdemania filiformis DSM
           12042]
 gi|223964846|gb|EEF69164.1| hypothetical protein HOLDEFILI_00715 [Holdemania filiformis DSM
           12042]
          Length = 640

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 13/117 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I    D  + G  + K+ +A     L++  +  ++ A +     PK IL+VG  G GKT 
Sbjct: 155 IKVRFDD-VAGCDEEKQEMAEIIDYLKSPKKFAKMGARI-----PKGILMVGSPGTGKTL 208

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +++ +A  A  PF  +  + F E+ +VG     V  + +     A  ++     D V
Sbjct: 209 LAKAVAGEADVPFYSISGSDFVEM-FVGVGASRVRDMFKKAQQTAPCMIFIDEIDAV 264


>gi|220917260|ref|YP_002492564.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|310943116|sp|B8J992|FTSH_ANAD2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219955114|gb|ACL65498.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 706

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG 
Sbjct: 231 YRRLGG-------RIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGV 282

Query: 98  NVEQIIRDLVDVA 110
              ++ RDL   A
Sbjct: 283 GAARV-RDLFAQA 294


>gi|109898689|ref|YP_661944.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Pseudoalteromonas atlantica T6c]
 gi|109700970|gb|ABG40890.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Pseudoalteromonas atlantica T6c]
          Length = 755

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S + +  +L   + GQ  A   +  A+     R        +     + L  GPTGVGKT
Sbjct: 449 SLKNLDRDLKLVVFGQDQAIDTLTDAI-----RLSRAGLGAETKPIGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            I+++L+ + G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 504 EITQQLSNIMGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHS 560

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 561 VVLLDEIEKAHSDVFNILLQVMDHGTLTDNN 591


>gi|104783632|ref|YP_610130.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           entomophila L48]
 gi|95112619|emb|CAK17347.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           entomophila L48]
          Length = 854

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L   +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMESLLHERVIGQDEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|34499124|ref|NP_903339.1| ATP-dependent Clp protease, ATP-binding subunit [Chromobacterium
           violaceum ATCC 12472]
 gi|34104975|gb|AAQ61331.1| ATP-dependent Clp protease, ATP-binding subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 760

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ+ A   +A A++              +    + L  GPTGVGKT +
Sbjct: 455 KNLERDLKNVVFGQEKAIEGLASAIK-----MTRSGLGNPQKPIGSFLFSGPTGVGKTEL 509

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA + G   I+ +++++ E   V R
Sbjct: 510 ARQLAYILGVELIRFDMSEYMERHAVSR 537


>gi|332975520|gb|EGK12410.1| ATP-dependent Clp protease [Desmospora sp. 8437]
          Length = 722

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L+R +IGQ +A R VA A+     R+      +      + L VGPTGVGKT +
Sbjct: 422 KDLPDRLNRQVIGQAEAVRKVAKAI-----RRNRAGLRKGTRPIGSFLFVGPTGVGKTEL 476

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           ++ LAR         I+++++++ E   V + +      +       + E  R +
Sbjct: 477 AKTLAREMFGKEDAMIRLDMSEYMEKHSVSKLIGSPPGYVGHEEAGQLTEQVRRK 531



 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + +R    + +     +   +  I +F   G   VG   L++  ++ M       IR+ +
Sbjct: 437 EAVRKVAKAIRRNRAGLRKGTRPIGSFLFVGPTGVGKTELAKTLAREMFGKEDAMIRLDM 496

Query: 213 QKCYPELMRDESDRLIDM---DTVHRDSIQMVEN-----YGIVFLDEFDK---------I 255
            +    + +    +LI        H ++ Q+ E      Y I+ LDE +K         +
Sbjct: 497 SE---YMEKHSVSKLIGSPPGYVGHEEAGQLTEQVRRKPYSILLLDEIEKAHPDVQHLFL 553

Query: 256 VARDSGNGIGVSREGV--QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313
              + G         V  +  +L +   + V  K GSI         +    +    D  
Sbjct: 554 QIMEDGRLTDSQGRTVSFRDTILIMTSNAGVGVKKGSIGFGKTGEEPAQTNVLEGLKDFF 613

Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
            PE   RF   +  + LN+ +   I+      ++ +     + +G+ L  T+ +   LA+
Sbjct: 614 RPEFLNRFDAIIPFRPLNRENLVKIV----DLMLQELHRTAREQGLHLTVTDAAKKRLAE 669

Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDAE 417
           +           GAR L+ V+E  +ED          + + +++DAE
Sbjct: 670 LGY-----NPAFGARPLRRVIEEQVEDGIADLLLEGEEIQEILVDAE 711


>gi|332969337|gb|EGK08362.1| chaperone protein ClpB [Kingella kingae ATCC 23330]
          Length = 858

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A RAVA A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHKRVVGQDEAVRAVADAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+V+++++ E   + R
Sbjct: 617 CKTLANFLFDSEEHLIRVDMSEYMEKHSIAR 647


>gi|332522720|ref|ZP_08398972.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313984|gb|EGJ26969.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 813

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEEELHKRVIGQDEAISAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAEVLFDDESALIRFDMSEYMEKFSASRLNGAPPGYVGYD 604


>gi|296088557|emb|CBI37548.3| unnamed protein product [Vitis vinifera]
          Length = 1207

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            GQ+  KR +   +R     ++          PK +LL GP G GKT +++ +A  AG P
Sbjct: 671 AGQEYIKRELQEIVRILKNDEEFQNK--GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLP 728

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F     T F E+ +VG    ++ +DL   A
Sbjct: 729 FFAANGTDFVEM-FVGVAASRV-KDLFASA 756


>gi|311740465|ref|ZP_07714293.1| chaperone protein ClpB [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304511|gb|EFQ80586.1| chaperone protein ClpB [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 851

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGNRVVGQKEAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 620 ALADFLFDDESAMVRIDMSEYGEKHSVSRLVGAPPGYVGHEAGGQLTEAVRRR 672


>gi|254430431|ref|ZP_05044134.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001]
 gi|197624884|gb|EDY37443.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001]
          Length = 627

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L+   R   + A +     PK +LLVGP G GKT +S+ +A 
Sbjct: 172 DVAGVDEAKTELTEIVDFLKTPERYAAIGARI-----PKGVLLVGPPGTGKTLLSKAVAG 226

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 227 EASVPFFIISGSEFVEL-FVGAGAARV-RDLFEEA 259


>gi|122937699|gb|ABM68561.1| ATP-dependent Clp protease regulatory subunit ClpX [Lilium
           longiflorum]
          Length = 109

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 14/86 (16%)

Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTK-- 287
           TV   ++Q  +  G+V++DE DKI  +         VS EGVQ+ LL ++EG+ V+    
Sbjct: 4   TVADFNVQAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 62

Query: 288 ---------YGSINTDHILFIASGAF 304
                       I+T  ILFI  GAF
Sbjct: 63  GARKHPRGDNIQIDTKDILFICGGAF 88


>gi|42527829|ref|NP_972927.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Treponema
           denticola ATCC 35405]
 gi|54035775|sp|Q73K92|CLPB_TREDE RecName: Full=Chaperone protein ClpB
 gi|41818657|gb|AAS12846.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Treponema
           denticola ATCC 35405]
          Length = 859

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 565 QLEKVLQARVVGQDEAVRVVSDAIR------RNKAGLSDMNRPLGSFLCIGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA           +++++++ E   V R
Sbjct: 619 ARTLADFLFNDEKALTRIDMSEYMEKHSVSR 649


>gi|330842644|ref|XP_003293284.1| hypothetical protein DICPUDRAFT_41790 [Dictyostelium purpureum]
 gi|325076407|gb|EGC30195.1| hypothetical protein DICPUDRAFT_41790 [Dictyostelium purpureum]
          Length = 627

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +N  R ++L A +     PK  +L GP G GKT +++  A
Sbjct: 129 KDVAGMDEAKEEIMEFVSFLKNPERYKKLGARI-----PKGAILAGPPGTGKTLLAKATA 183

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  + F E+ +VG    ++ RDL   A
Sbjct: 184 GEAGVNFYTISGSDFVEM-FVGVGPSRV-RDLFKEA 217


>gi|320539058|ref|ZP_08038732.1| protein disaggregation chaperone [Serratia symbiotica str. Tucson]
 gi|320030898|gb|EFW12903.1| protein disaggregation chaperone [Serratia symbiotica str. Tucson]
          Length = 859

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 LEQELHSRVIGQDEAVSAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALASFLFDSDEAIVRIDMSEFMEKHSVSRLV 647


>gi|317482990|ref|ZP_07941994.1| ATP-dependent chaperone ClpB [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915597|gb|EFV37015.1| ATP-dependent chaperone ClpB [Bifidobacterium sp. 12_1_47BFAA]
          Length = 889

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|300691677|ref|YP_003752672.1| chaperone [Ralstonia solanacearum PSI07]
 gi|299078737|emb|CBJ51397.1| Chaperone [Ralstonia solanacearum PSI07]
          Length = 862

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT + 
Sbjct: 565 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGISDENKPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 619 KALAGFLFDSEEHMIRIDMSEFMEKHSVSR 648


>gi|293364528|ref|ZP_06611253.1| cell division protein FtsH [Streptococcus oralis ATCC 35037]
 gi|307702818|ref|ZP_07639768.1| ATP-dependent metallopeptidase HflB [Streptococcus oralis ATCC
           35037]
 gi|291317036|gb|EFE57464.1| cell division protein FtsH [Streptococcus oralis ATCC 35037]
 gi|307623674|gb|EFO02661.1| ATP-dependent metallopeptidase HflB [Streptococcus oralis ATCC
           35037]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLADDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|288917588|ref|ZP_06411952.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288350981|gb|EFC85194.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 662

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G + AK+ ++  +   + R            P+ +L+VGP G GKT ++R +A  A 
Sbjct: 191 DVAGYEGAKQEISEVVD--FLRHPDQYREAGAHGPRGVLMVGPPGTGKTLLARAVAGEAE 248

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF+ +  + F E+ +VG    ++ RDL   A
Sbjct: 249 VPFLSIAGSGFVEM-FVGVGASRV-RDLFAEA 278


>gi|258568020|ref|XP_002584754.1| spastin [Uncinocarpus reesii 1704]
 gi|237906200|gb|EEP80601.1| spastin [Uncinocarpus reesii 1704]
          Length = 943

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK+A+  A+   + R  L   LR+    + +LL GP G GK
Sbjct: 645 EIVVRGDEVHWDDIAGLEIAKKALKEAVVYPFLRPDLFMGLREP--TRGMLLFGPPGTGK 702

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  T  T   + G + E+++R L  +A
Sbjct: 703 TMLARAVATESKSTFFSISATSLT-SKWHGES-EKLVRTLFALA 744


>gi|238019160|ref|ZP_04599586.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
 gi|237863859|gb|EEP65149.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
          Length = 815

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ DA  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEEELHKRVVGQDDAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|153813279|ref|ZP_01965947.1| hypothetical protein RUMOBE_03696 [Ruminococcus obeum ATCC 29174]
 gi|149830692|gb|EDM85783.1| hypothetical protein RUMOBE_03696 [Ruminococcus obeum ATCC 29174]
          Length = 708

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A +AVA A+    +R ++   L+D   P  + L +GPTGVGKT +S
Sbjct: 398 LEKELHKRVIGQEEAVKAVAQAV----KRGRVG--LKDPNRPIGSFLFLGPTGVGKTELS 451

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+V+++++ E            GYVG +       L +        
Sbjct: 452 KALAEAVFGSEQAMIRVDMSEYMEKHSVSKMIGSPPGYVGYD---EGGQLSEKVRRNPYS 508

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    ++ R+V  K+      S+      +      
Sbjct: 509 VLLFDEIEKAHPDVFNILLQVLDDGHITDAHGRKVDFKQTIIIMTSNVGAQAIIEPKKLG 568

Query: 176 ISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
             + D            + E   ++       +I   +   +  L + E  ++++
Sbjct: 569 FMSQDNEKQDYERMKSGVMEEVRRLFKPEFLNRIDEIMV--FHPLKKPEIRKIVN 621


>gi|72163275|ref|YP_290932.1| ATPase [Thermobifida fusca YX]
 gi|71917007|gb|AAZ56909.1| ATPase [Thermobifida fusca YX]
          Length = 830

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 24/248 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ DA +A++ A+R      +  A L+D   P    +  GP+GVGKT + 
Sbjct: 506 MEEELHKRVIGQDDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELC 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I++++++F E   V R        +             ++VR +  
Sbjct: 560 KALAEFLFGDEDALIQLDMSEFMEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++   G    S  + +   +L D +  + +    +   ++++   DI  G  +
Sbjct: 616 SVVLFDEIEKAHGDIFNSLLQVLEEGRLTDAQGRNVDFKNTIIVMTTNLGTRDISKGQPM 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD----TVHRDSIQMVEN 243
           G     +            +++  V +   +  R E    +D       + +  I  + +
Sbjct: 676 GFARPDD------TQTTYDRMKAKVNEELKQHFRPEFLNRVDDTIVFHQLTQKEITAIVD 729

Query: 244 YGIVFLDE 251
             +  LDE
Sbjct: 730 LMVARLDE 737


>gi|46199425|ref|YP_005092.1| endopeptidase Clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
 gi|54035771|sp|Q72IK9|CLPB_THET2 RecName: Full=Chaperone protein ClpB
 gi|46197050|gb|AAS81465.1| endopeptidase clp ATP-binding chain B, clpB [Thermus thermophilus
           HB27]
          Length = 854

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R      +  A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|23465812|ref|NP_696415.1| protease of ClpA/ClpB type [Bifidobacterium longum NCC2705]
 gi|189440447|ref|YP_001955528.1| ATP-binding subunit of Clp protease [Bifidobacterium longum DJO10A]
 gi|322691967|ref|YP_004221537.1| Clp protease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|54035860|sp|Q8G4X4|CLPB_BIFLO RecName: Full=Chaperone protein ClpB
 gi|23326506|gb|AAN25051.1| protease of ClpA/ClpB type [Bifidobacterium longum NCC2705]
 gi|189428882|gb|ACD99030.1| ATP-binding subunit of Clp protease [Bifidobacterium longum DJO10A]
 gi|320456823|dbj|BAJ67445.1| Clp protease [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 889

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 573 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 627

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 628 ALADFLFDDEKAMVRIDMSEYMEKASVSR 656


>gi|117927429|ref|YP_871980.1| ATPase [Acidothermus cellulolyticus 11B]
 gi|117647892|gb|ABK51994.1| ATPase AAA-2 domain protein [Acidothermus cellulolyticus 11B]
          Length = 839

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEEELHKRVIGQDEAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I++++++F E   V R        +             ++VR +  
Sbjct: 560 KALAEFLFGDEDSLIQLDMSEFMEKHTVSRLFGSPPGYV----GYDEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 616 SVVLFDEVEKAHPDIFNSLLQILEDGRLTDAQGRVVDFKNTVIIMTTNLGTRDIAKGFNM 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM----DTVHRDSIQMVEN 243
           G    ++        G  +++R  VQ    +  R E    +D       +  D I  + +
Sbjct: 676 GFSKEND------TQGSYERMRAKVQDELKQHFRPEFLNRVDDIIVFHQLTEDEIVKIVD 729

Query: 244 YGIVFLDE 251
             I  +DE
Sbjct: 730 LMIAKVDE 737


>gi|308186237|ref|YP_003930368.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pantoea vagans
           C9-1]
 gi|308056747|gb|ADO08919.1| ATP-dependent Clp protease ATP-binding subunit clpA [Pantoea vagans
           C9-1]
          Length = 758

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L   + GQ +A  A+  A++            +D     + L  GPTGVGKT
Sbjct: 447 TLRNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|293606291|ref|ZP_06688652.1| chaperone protein ClpB [Achromobacter piechaudii ATCC 43553]
 gi|292815286|gb|EFF74406.1| chaperone protein ClpB [Achromobacter piechaudii ATCC 43553]
          Length = 868

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 571 MEEFLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 624

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 625 RALAEFMFDSEEHLIRIDMSEFMEKHSVAR 654


>gi|269955171|ref|YP_003324960.1| ATPase AAA-2 domain-containing protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303852|gb|ACZ29402.1| ATPase AAA-2 domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 852

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 100/256 (39%), Gaps = 28/256 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEEELHKRVVGQEAAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F+E            GYVG +       L +        
Sbjct: 560 KALAEFLFGDEDALIQLDMSEFSEKHTVSRLFGSPPGYVGYD---EGGQLTEKVRRKPFS 616

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTSS 174
               +  E+A  +    +L  L  G+   S  R V F+  +     +    DI     + 
Sbjct: 617 VVLFDEVEKAHADIFNSLLQVLEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDIAKGVQTG 676

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
             +  D+          ++E   +        ++   V   +P+L + E   ++D++   
Sbjct: 677 FQAGGDLVTSYERMKAKVNEELKQHFRPEFLNRVDDVVV--FPQLTQKEIVEIVDLEIAK 734

Query: 235 RDSIQMVENYGIVFLD 250
            D     ++  I   D
Sbjct: 735 LDKRLRDKDMAIELTD 750


>gi|253997307|ref|YP_003049371.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylotenera
           mobilis JLW8]
 gi|253983986|gb|ACT48844.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylotenera
           mobilis JLW8]
          Length = 757

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A++ A++            ++     + L  GPTGVGKT +
Sbjct: 448 KTLERDLKAVVFGQDKAIEALSSAVK-----MARSGLGQNNKPIGSFLFSGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   I+ +++++ E            GYVG     ++ + +      
Sbjct: 503 AKQLAYIMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLMTEAITKHPYC 557


>gi|227546979|ref|ZP_03977028.1| endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212511|gb|EEI80400.1| endopeptidase Clp [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 894

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|170516911|gb|ACB15391.1| ClpB [Bifidobacterium longum]
          Length = 852

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 564 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 619 ALADFLFDDEKAMVRIDMSEYMEKASVSR 647


>gi|107099795|ref|ZP_01363713.1| hypothetical protein PaerPA_01000813 [Pseudomonas aeruginosa PACS2]
          Length = 849

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 557 MEQELHRRVIGQDEAVVAVSNAVR------RSRAGLADPNRPSGSFLFLGPTGVGKTELC 610

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 611 KALAEFLFDTEEALVRIDMSEFMEKHSVAR 640


>gi|315612147|ref|ZP_07887062.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
 gi|315315708|gb|EFU63745.1| cell division protein FtsH [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLADDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|302656150|ref|XP_003019831.1| hypothetical protein TRV_06119 [Trichophyton verrucosum HKI 0517]
 gi|291183603|gb|EFE39207.1| hypothetical protein TRV_06119 [Trichophyton verrucosum HKI 0517]
          Length = 995

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +    L  ++ P+  +L GP G GKT +++  A  + 
Sbjct: 508 DVAGMDEAKVEIMEFV-SFLKRPEQFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESA 565

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 566 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 595


>gi|261335539|emb|CBH18533.1| cell division protein FtsH homologue, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 677

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 34/209 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M++     P+    ++       IIG  +AK  +      +++  +  +L A L     P
Sbjct: 152 MEMMNPMKPKNFRVDVKGTTFADIIGIPEAKEDLKQYVDFIKDPKKFTRLGARL-----P 206

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A APF+      F EI  G   + V ++     + A 
Sbjct: 207 KGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREAAP 266

Query: 112 NIVRESRRDEVREQ------------ASINAEERILDALVGKTATS--------NTREVF 151
            IV     D +  +                   ++L  L G T+          N  EV 
Sbjct: 267 CIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPEVI 326

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFD 180
            K L      D+++++ + D S+ +  F+
Sbjct: 327 DKALLREGRFDRKVNVPMPDRSARVELFE 355


>gi|227533051|ref|ZP_03963100.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189452|gb|EEI69519.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 715

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 190 DVAGAEEEKQELVEVVEFLKDPRKFSALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 277


>gi|94991511|ref|YP_599610.1| cell division protein ftsH [Streptococcus pyogenes MGAS2096]
 gi|94545019|gb|ABF35066.1| Cell division protein ftsH [Streptococcus pyogenes MGAS2096]
          Length = 540

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 69  DVAGAEEEKQELVEVVDFLKNPKKYKSLGARI-----PAGVLLEGPPGTGKTLLAKAVAG 123

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            AG PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 124 EAGVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 162


>gi|54035919|sp|Q9Z6E4|CLPB_STRAL RecName: Full=Chaperone protein ClpB
 gi|4322269|gb|AAD15989.1| heat shock protein ClpB [Streptomyces albus G]
          Length = 857

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL R +IGQ +A +AV+ A+R R            +    + L +GPTGVGKT +++
Sbjct: 563 MEAELGRRLIGQSEAVQAVSDAVRTR------AGIADPDRPTGSFLFLGPTGVGKTELAK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 617 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 647


>gi|116619644|ref|YP_821800.1| ATPase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222806|gb|ABJ81515.1| ATPase AAA-2 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 869

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+       +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 559 LEEELHKRVIGQDEAVTAVAEAV------IRARSGLKDPQRPIGSFIFMGPTGVGKTELA 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 613 RALAEYMFDDEHAMIRIDMSEYQEKHTVSRLV 644


>gi|322494242|emb|CBZ29539.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 719

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 35/210 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M +     P+    E+     + +IG  +AK  +      L+   +  +L A L     P
Sbjct: 191 MDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPTKFTRLGARL-----P 245

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A  PF       F EI  G   + V ++  +    A 
Sbjct: 246 KGCLLTGQPGTGKTLLARAVAGEASTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAP 305

Query: 112 NIVRESRRDEVREQ-------------ASINAEERILDALVGKTATS--------NTREV 150
            +V     D +  +                    ++L  L G T+          N  E 
Sbjct: 306 CVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEA 365

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             K L      D+++ I + D  +    F+
Sbjct: 366 IDKALLREGRFDRKVTIPMPDHKARCELFE 395


>gi|316935949|ref|YP_004110931.1| ATP-dependent chaperone ClpB [Rhodopseudomonas palustris DX-1]
 gi|315603663|gb|ADU46198.1| ATP-dependent chaperone ClpB [Rhodopseudomonas palustris DX-1]
          Length = 879

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L + ++GQ +A  AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 563 MEEQLGQRVVGQFEAVHAVSTAVR------RARAGLQDPNRPMGSFMFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAEYLFDDETAMVRIDMSEFMEKHSVAR 646


>gi|260771761|ref|ZP_05880679.1| ClpB protein [Vibrio metschnikovii CIP 69.14]
 gi|260613053|gb|EEX38254.1| ClpB protein [Vibrio metschnikovii CIP 69.14]
          Length = 838

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A   VA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 542 QMETFLHQRVIGQSEAVEVVADAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTEL 595

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 596 CKTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 628


>gi|189095436|ref|YP_001936449.1| cell division protein [Heterosigma akashiwo]
 gi|310943132|sp|B2XTF7|FTSH_HETA2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|157694779|gb|ABV66055.1| ATP-dependent Zn protease; cell division protein FtsH homolog
           [Heterosigma akashiwo]
 gi|157778010|gb|ABV70196.1| ATP-dependent Zn protease [Heterosigma akashiwo]
          Length = 663

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK +LLVGP G GKT +++ +A  A  PFI +  ++F E+ +VG     V  +      
Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFINISGSEFVEM-FVGVGAARVRNLFEKAKQ 294

Query: 109 VAINIVRESRRDEV 122
               I+     D V
Sbjct: 295 DTPCIIFIDEIDAV 308


>gi|239916715|ref|YP_002956273.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|281414827|ref|ZP_06246569.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
 gi|239837922|gb|ACS29719.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
           luteus NCTC 2665]
          Length = 851

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R +  EL R +IGQ +A ++++ A+R      +  A L+D   P    +  GPTGVGKT 
Sbjct: 512 RTMEDELHRRVIGQDEAIKSLSRAIR------RTRAGLKDPNRPSGSFIFAGPTGVGKTE 565

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +++ LA          I +++++F E   V R
Sbjct: 566 LAKSLAEFLFGDEDALITLDMSEFQEKHTVSR 597


>gi|152985423|ref|YP_001350513.1| ATP-dependent chaperone ClpB [Pseudomonas aeruginosa PA7]
 gi|150960581|gb|ABR82606.1| ATP-dependent chaperone ClpB [Pseudomonas aeruginosa PA7]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEQELHRRVIGQDEAVVAVSNAVR------RSRAGLADPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|157369131|ref|YP_001477120.1| protein disaggregation chaperone [Serratia proteamaculans 568]
 gi|157320895|gb|ABV39992.1| ATPase AAA-2 domain protein [Serratia proteamaculans 568]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 LEQELHSRVIGQDEAVSAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALASFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|88860128|ref|ZP_01134767.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas tunicata D2]
 gi|88818122|gb|EAR27938.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Pseudoalteromonas tunicata D2]
          Length = 754

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + I   L   + GQ ++  A+  A+     R        ++    + L  GPTGVGKT
Sbjct: 451 TLKNIDRNLKMVVFGQDESIDALTAAI-----RLSRSGLSSEDKPIGSFLFAGPTGVGKT 505

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++++LA+  G   I+ +++++ E            GYVG     +   L +  I     
Sbjct: 506 EVTKQLAKCMGVELIRFDMSEYLERHAISRLIGAPPGYVGFEQGGL---LTEAVIKQPHA 562

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 563 VVLLDEIEKAHPDIFNILLQVMDHGTLTDNN 593


>gi|304321616|ref|YP_003855259.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Parvularcula bermudensis HTCC2503]
 gi|303300518|gb|ADM10117.1| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Parvularcula bermudensis HTCC2503]
          Length = 782

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 27/210 (12%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  +L R + GQ  A  A+  A++         A LR+   P  + L  GPTGVGKT 
Sbjct: 456 RNMGGDLKRVVYGQDKAIDALTAAIK------LARAGLREPDKPIGSYLFAGPTGVGKTE 509

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRES 117
           ++++LA++ G   ++ +++++ E            GYVG +    +  L D         
Sbjct: 510 VAKQLAKMMGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGGL--LTDQVDQNPHAV 567

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
              +  E+A       +L  +     T +         +  +  +  I +     ++D S
Sbjct: 568 VLLDEIEKAHPEIFNILLQVMDNGQLTDSHG-------KKIDFRNVIIIMTTNAGAADAS 620

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKK 207
             +I  G         +   K+     + +
Sbjct: 621 KNEIGFGRGRATDQQQQAIEKLFTPEFRNR 650


>gi|326693628|ref|ZP_08230633.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
           argentinum KCTC 3773]
          Length = 688

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           RE+ + L  ++IGQ  A + VA A+R    R  L    R      + L VGPTGVGKT +
Sbjct: 385 RELDAHLLAHVIGQDAAVQTVAKAIR--RNRIGLTKSGR---PIGSFLFVGPTGVGKTEL 439

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           +++LA+         I+ +++++ E            GYVG
Sbjct: 440 AKQLAKEMFGSKDALIRFDMSEYMEKHAVSKMIGAPAGYVG 480


>gi|190408318|gb|EDV11583.1| hypothetical protein SCRG_01979 [Saccharomyces cerevisiae RM11-1a]
          Length = 825

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 32/268 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  +   L   +  ++ P+  +L GP G GKT +++  A  A
Sbjct: 348 KDVAGCDEAKEEIMEFV-SFLKEPSLYEKMGAKI-PRGAILSGPPGTGKTLLAKATAGEA 405

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ----- 125
           G PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++     
Sbjct: 406 GVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGNISG 463

Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A+   E  +   LV              A +N  ++  K L      D+ I+I+  +   
Sbjct: 464 ANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEG 523

Query: 175 DISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDRLID 229
             + F +       +  I +L    + +        I     +         +++ +L  
Sbjct: 524 RKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNH 583

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVA 257
            +      I  VE    +   E  K+VA
Sbjct: 584 FEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|55981456|ref|YP_144753.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
 gi|66774200|sp|Q9RA63|CLPB_THET8 RecName: Full=Chaperone protein ClpB
 gi|55772869|dbj|BAD71310.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus
           thermophilus HB8]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R      +  A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|38492937|pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 gi|38492938|pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 gi|38492939|pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
 gi|5231279|dbj|BAA81745.1| ClpB [Thermus thermophilus]
 gi|8051691|dbj|BAA96085.1| ClpB [Thermus thermophilus]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R      +  A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                   I++++T++ E   V R
Sbjct: 612 LFDTEEAMIRIDMTEYMEKHAVSR 635


>gi|294496954|ref|YP_003560654.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium QM B1551]
 gi|294346891|gb|ADE67220.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium QM B1551]
          Length = 812

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 103/291 (35%), Gaps = 40/291 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AVA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 MEEILHSRVIGQEEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+++++++ E     R V      +       + E  R +      
Sbjct: 556 RALAESIFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVL 615

Query: 124 ----EQASINAEERILDAL-VGKTATSNTREV-FRKKL--------RDGEISDKEIDIEV 169
               E+A  +    +L  L  G+   S  R V FR  +         D     K +   V
Sbjct: 616 LDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGADTLKRSKHLGFTV 675

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                D  +      A +      E  +++        +         +LM D+  + + 
Sbjct: 676 EAEGQDYKDMKGKVMAEMKRAFRPEFLNRIDEIIVFHSLEKPHLAEIVKLMADQLTKRLK 735

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
              +  +  +             DKI   + G         ++R +   +E
Sbjct: 736 EQEIDLELTKEA----------IDKIA--EEGFDPEYGARPLRRAIQKHIE 774


>gi|224165138|ref|XP_002338774.1| predicted protein [Populus trichocarpa]
 gi|222873444|gb|EEF10575.1| predicted protein [Populus trichocarpa]
          Length = 287

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 24  QDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            +AK   + V   L++  + Q+L   +     P+ +LLVGP G GKT +++ +A  A  P
Sbjct: 1   DEAKEEVKEVVDFLKDPNKFQKLGGRI-----PRGLLLVGPPGTGKTLLAKSIAGEAKVP 55

Query: 81  FIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           F  +  + F E+ +VG     V  +  +    A  I+     D V
Sbjct: 56  FFSISGSDFVEM-FVGVGAARVRDMFENAKKNAPCIIFIDEIDAV 99


>gi|195952893|ref|YP_002121183.1| ATP-dependent metalloprotease FtsH [Hydrogenobaculum sp. Y04AAS1]
 gi|310943133|sp|B4U7U4|FTSH_HYDS0 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|195932505|gb|ACG57205.1| ATP-dependent metalloprotease FtsH [Hydrogenobaculum sp. Y04AAS1]
          Length = 636

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRL 73
           LD  + G  + K  VA  +       + PA  R      PK IL  G  GVGKT +++ L
Sbjct: 162 LDN-VAGMDEVKEEVAEVI----EYLKDPARFRKLGGRPPKGILFYGEPGVGKTLLAKAL 216

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEV-REQASIN 129
           A  A  PFI V  + F E+ +VG    ++          A  IV     D V R + +IN
Sbjct: 217 AGEAHVPFISVSGSDFVEM-FVGVGAARMRDTFETARKNAPCIVFIDEIDAVGRSRGAIN 275

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
                   L G      T     + L + +  D   +  +   +++  +   P     G 
Sbjct: 276 --------LGGNDEREQTLN---QLLVEMDGFDTS-EGILIIAATNRPDILDPALLRPGR 323

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            +      K    GR + +++  +     L +D    LI
Sbjct: 324 FDRQIFIPKPDVKGRYEILKVHAKN--KPLAKDVDLELI 360


>gi|150401563|ref|YP_001325329.1| ATPase central domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014266|gb|ABR56717.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 372

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           +IGQ +AK+   I +    +  + P ++  E  PKNIL  G  G GKT ++R LA     
Sbjct: 127 VIGQNEAKKKCKIIM----KYLENP-EIFGEWAPKNILFYGAPGTGKTLLARALATETDV 181

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           P   ++ T+      VG   +QI ++L + A
Sbjct: 182 PLYLIKATELIGDH-VGDGSKQI-QELYEKA 210


>gi|187926562|ref|YP_001892907.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|241666072|ref|YP_002984431.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
 gi|187728316|gb|ACD29480.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J]
 gi|240868099|gb|ACS65759.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D]
          Length = 663

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  ++  +   +   R Q L   +     PK +LLVG  G GKT +++ +A 
Sbjct: 190 DVAGIDEAKDELSEIVSFLKEPLRYQLLGGRI-----PKGVLLVGAPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 245 EAGVPFFSMSGSEFVEM-FVGVGAARV-RDLFSQA 277


>gi|325105711|ref|YP_004275365.1| membrane protease FtsH catalytic subunit [Pedobacter saltans DSM
           12145]
 gi|324974559|gb|ADY53543.1| membrane protease FtsH catalytic subunit [Pedobacter saltans DSM
           12145]
          Length = 683

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS     + G  +AK+ V      L+N  +   L   +     PK  LLVG  G GKT +
Sbjct: 206 VSITFNDVAGLNEAKQEVMEIVDFLKNPKKYTNLGGKI-----PKGALLVGSPGTGKTLL 260

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 261 AKAVAGEAQVPFFSMSGSDFVEM-FVGVGASRV-RDLFKQA 299


>gi|313890554|ref|ZP_07824182.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121071|gb|EFR44182.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
          Length = 699

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI S L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEIASRLKAHVIGQDQAVSAVARAI-----RRNRAGFDEGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDMFGSKESIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|304387133|ref|ZP_07369380.1| chaperone protein ClpB [Neisseria meningitidis ATCC 13091]
 gi|304338785|gb|EFM04892.1| chaperone protein ClpB [Neisseria meningitidis ATCC 13091]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|256826248|ref|YP_003150208.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256689641|gb|ACV07443.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 698

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 197 VPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 253


>gi|255325556|ref|ZP_05366656.1| ATP-dependent chaperone protein ClpB [Corynebacterium
           tuberculostearicum SK141]
 gi|255297344|gb|EET76661.1| ATP-dependent chaperone protein ClpB [Corynebacterium
           tuberculostearicum SK141]
          Length = 851

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGNRVVGQKEAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 620 ALADFLFDDESAMVRIDMSEYGEKHSVSRLVGAPPGYVGHEAGGQLTEAVRRR 672


>gi|227891605|ref|ZP_04009410.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|301300311|ref|ZP_07206518.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|227866752|gb|EEJ74173.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus salivarius ATCC 11741]
 gi|300214976|gb|ADJ79392.1| Cell division protein [Lactobacillus salivarius CECT 5713]
 gi|300852084|gb|EFK79761.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 692

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      LR+  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 192 DVAGAEEEKQELVEVVEFLRDPRKFLALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 246

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 247 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 282


>gi|116495971|ref|YP_807705.1| ATP-dependent Zn protease [Lactobacillus casei ATCC 334]
 gi|191639450|ref|YP_001988616.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239630370|ref|ZP_04673401.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067521|ref|YP_003789544.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|116106121|gb|ABJ71263.1| membrane protease FtsH catalytic subunit [Lactobacillus casei ATCC
           334]
 gi|190713752|emb|CAQ67758.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein
           FtsH) [Lactobacillus casei BL23]
 gi|239526653|gb|EEQ65654.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439928|gb|ADK19694.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang]
 gi|327383542|gb|AEA55018.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei LC2W]
 gi|327386735|gb|AEA58209.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei BD-II]
          Length = 715

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 190 DVAGAEEEKQELVEVVEFLKDPRKFSALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 245 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 277


>gi|82702670|ref|YP_412236.1| ATPase with chaperone activity [Nitrosospira multiformis ATCC
           25196]
 gi|82410735|gb|ABB74844.1| ATPase with chaperone activity [Nitrosospira multiformis ATCC
           25196]
          Length = 869

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 MEEKLHERVVGQDEAVRLVSDAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 622 RALAGFLFDSEEHMIRIDMSEFMEKHSVAR 651


>gi|89092940|ref|ZP_01165892.1| ATP-binding protease component ClpA [Oceanospirillum sp. MED92]
 gi|89082965|gb|EAR62185.1| ATP-binding protease component ClpA [Oceanospirillum sp. MED92]
          Length = 751

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 18/115 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L   ++GQ +A   ++ A++         A L++   P    L  GPTGVGKT +
Sbjct: 452 KLDSNLKMVVLGQDEAIDTLSSAIK------LSRAGLKEPNKPVGCFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LAR+ G   ++ +++++ E            GYVG +   ++ + +  + + 
Sbjct: 506 TQQLARIMGIELVRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTEAITKSPHC 560


>gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
 gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
          Length = 677

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK ILLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RD+   A
Sbjct: 217 RVPKGILLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDMFQTA 274


>gi|253689510|ref|YP_003018700.1| ATP-dependent chaperone ClpB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756088|gb|ACT14164.1| ATP-dependent chaperone ClpB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|229821882|ref|YP_002883408.1| ATPase AAA-2 domain protein [Beutenbergia cavernae DSM 12333]
 gi|229567795|gb|ACQ81646.1| ATPase AAA-2 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 843

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + I+GQ+ A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEDELHKRIVGQEAAVKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTLLA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F+E   V R
Sbjct: 560 RTLAEFLFGDEDALIQLDMSEFSEKHTVSR 589


>gi|329905633|ref|ZP_08274164.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547555|gb|EGF32361.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 767

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ+ A  A++ A++            + +    + L  GPTGVGKT +++
Sbjct: 455 IERDLKNVVFGQEPAIEALSSAIK-----MARAGLGKTDKPIGSFLFSGPTGVGKTEVAK 509

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA + G   I+ +++++ E            GYVG +   ++ + +    +
Sbjct: 510 QLAFVLGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPH 561


>gi|309804710|ref|ZP_07698775.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           09V1-c]
 gi|309806990|ref|ZP_07700972.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           03V1-b]
 gi|309809579|ref|ZP_07703436.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           2503V10-D]
 gi|325912455|ref|ZP_08174850.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII
           143-D]
 gi|308166102|gb|EFO68320.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           09V1-c]
 gi|308166610|gb|EFO68807.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           03V1-b]
 gi|308170060|gb|EFO72096.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           2503V10-D]
 gi|325475797|gb|EGC78968.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII
           143-D]
          Length = 681

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 206 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 260

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 261 VEM-FVGVGASRV-RDLFDNA 279


>gi|254674233|emb|CBA10017.1| ATP-dependent protease, ATPase subunit [Neisseria meningitidis
           alpha275]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|315498625|ref|YP_004087429.1| ATP-dependent chaperone clpb [Asticcacaulis excentricus CB 48]
 gi|315416637|gb|ADU13278.1| ATP-dependent chaperone ClpB [Asticcacaulis excentricus CB 48]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 29/249 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 560 MEDELRKRVVGQDEALEAVSDAVR------RARAGLKDPNRPIGSFLFLGPTGVGKTELN 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + LA           +++++++ E            GYVG +      E + R    V +
Sbjct: 614 KALAEFLFDDETAITRLDMSEYMEKHAVSRMIGAPPGYVGYDEGGALTEAVRRRPYQVVL 673

Query: 112 NIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               E    +V        ++ R+ D         NT  V    L    + + E D +V 
Sbjct: 674 FDEVEKAHPDVFNVLLQVLDDGRLTDGQGRVVDFRNTLIVMTSNLGSQYLVNMEDDQDVE 733

Query: 171 DTSSDISNFDIPGGASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
                + +          +  + E  LF ++  +     +R+ ++     L   +    I
Sbjct: 734 MVRGLVMDEVKRHFRPEFLNRIDETILFHRLGRAQMGNIVRIQLKGLEKLLKDRQMTLAI 793

Query: 229 DMDTVHRDS 237
           D   ++  +
Sbjct: 794 DDAALNHLA 802


>gi|218893637|ref|YP_002442506.1| ClpB protein [Pseudomonas aeruginosa LESB58]
 gi|218773865|emb|CAW29679.1| ClpB protein [Pseudomonas aeruginosa LESB58]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEQELHRRVIGQDEAVVAVSNAVR------RSRAGLADPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|218297177|ref|ZP_03497839.1| ATP-dependent chaperone ClpB [Thermus aquaticus Y51MC23]
 gi|218242454|gb|EED08993.1| ATP-dependent chaperone ClpB [Thermus aquaticus Y51MC23]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76
           + ++GQ +A RAVA A+R      +  A L+D   P  + L +GPTGVGKT +++ LA  
Sbjct: 558 KRVVGQDEAIRAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611

Query: 77  A---GAPFIKVEVTKFTEIGYVGR 97
                   +++++T++ E   V R
Sbjct: 612 LFDTEEAMVRIDMTEYMEKHAVSR 635


>gi|90962325|ref|YP_536241.1| cell division protein [Lactobacillus salivarius UCC118]
 gi|90821519|gb|ABE00158.1| Cell division protein [Lactobacillus salivarius UCC118]
          Length = 692

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      LR+  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 192 DVAGAEEEKQELVEVVEFLRDPRKFLALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 246

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 247 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 282


>gi|89892947|ref|YP_516434.1| hypothetical protein DSY0201 [Desulfitobacterium hafniense Y51]
 gi|89332395|dbj|BAE81990.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 657

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A 
Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQAK 246

Query: 112 NI 113
             
Sbjct: 247 KN 248


>gi|57168002|ref|ZP_00367141.1| cell division protein FtsH [Campylobacter coli RM2228]
 gi|57020376|gb|EAL57045.1| cell division protein FtsH [Campylobacter coli RM2228]
          Length = 648

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 212 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 269

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 270 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 323

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 324 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 367


>gi|330829986|ref|YP_004392938.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aeromonas
           veronii B565]
 gi|328805122|gb|AEB50321.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aeromonas
           veronii B565]
          Length = 751

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   +  A+     R        +       L  GPTGVGKT +
Sbjct: 448 KNLERNLKMVVFGQDKAIEVLTDAI-----RLSRSGLGNERRPVGCFLFAGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++L +  G   ++ +++++ E            GYVG     ++ D V    + 
Sbjct: 503 TQQLGKALGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFEQGGLLTDAVIKHPHS 557


>gi|325132627|gb|EGC55316.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M6190]
 gi|325138148|gb|EGC60721.1| ATP-dependent chaperone ClpB [Neisseria meningitidis ES14902]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|306826199|ref|ZP_07459534.1| cell division protein FtsH [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431675|gb|EFM34656.1| cell division protein FtsH [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 652

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLADDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|302774238|ref|XP_002970536.1| hypothetical protein SELMODRAFT_411212 [Selaginella moellendorffii]
 gi|300162052|gb|EFJ28666.1| hypothetical protein SELMODRAFT_411212 [Selaginella moellendorffii]
          Length = 740

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A +AVA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 484 LDEHLHKRLIGQDPAVQAVADAIR------RSRAGLADPNRPIASFMFMGPTGVGKTELA 537

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++ +++++ E   V R
Sbjct: 538 KALAEYLFDTDKALLRFDMSEYMEKHAVSR 567


>gi|259501001|ref|ZP_05743903.1| cell division protein FtsH [Lactobacillus iners DSM 13335]
 gi|302190550|ref|ZP_07266804.1| ATP-dependent metalloprotease FtsH [Lactobacillus iners AB-1]
 gi|309803794|ref|ZP_07697880.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           11V1-d]
 gi|312871501|ref|ZP_07731594.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           3008A-a]
 gi|312872538|ref|ZP_07732606.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874306|ref|ZP_07734338.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2052A-d]
 gi|259167695|gb|EEW52190.1| cell division protein FtsH [Lactobacillus iners DSM 13335]
 gi|308164203|gb|EFO66464.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           11V1-d]
 gi|311090179|gb|EFQ48591.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2052A-d]
 gi|311091900|gb|EFQ50276.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092896|gb|EFQ51247.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           3008A-a]
          Length = 681

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 206 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 260

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 261 VEM-FVGVGASRV-RDLFDNA 279


>gi|311113965|ref|YP_003985186.1| chaperone protein ClpB [Gardnerella vaginalis ATCC 14019]
 gi|310945459|gb|ADP38163.1| chaperone protein ClpB [Gardnerella vaginalis ATCC 14019]
          Length = 868

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ +A RA+A A+     R+             + L +GPTGVGKT +++
Sbjct: 572 MEKELSKRVVGQSEAIRAIADAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 626

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 627 ALADFLFDDERAMVRIDMSEYMEKASVSR 655


>gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 629

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K     +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 170 DDVAGVEESKTELEEIVEFLKSPQRFTEIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSISGSEFVEL-FVGTGAARV-RDLFEQA 258


>gi|154319901|ref|XP_001559267.1| hypothetical protein BC1G_01931 [Botryotinia fuckeliana B05.10]
 gi|150854670|gb|EDN29862.1| hypothetical protein BC1G_01931 [Botryotinia fuckeliana B05.10]
          Length = 903

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 93/272 (34%), Gaps = 38/272 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +       + P   +     +P+  +L GP G GKT +++  A 
Sbjct: 421 KDVAGMDEAKLEIMEFV----SFLKTPEQFQRLGAKIPRGAILSGPPGTGKTLLAKATAG 476

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEVREQA----- 126
            +  PF  V  ++F E+ +VG    ++ RDL  +A      I+     D + +       
Sbjct: 477 ESQVPFFSVSGSEFVEM-FVGVGASRV-RDLFAMARKSTPCIIFIDEIDAIGKSRGKSGG 534

Query: 127 --------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
                         +IL  + G   T         N  +V  K L      D+ I I+  
Sbjct: 535 FSGGGNDEREATLNQILTEMDGFNTTEQIVVLAGTNRPDVLDKALMRPGRFDRHISIDRP 594

Query: 171 DTSSDISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD-- 225
                   F +  G    +  I  L+   S +        I   V +      R ++   
Sbjct: 595 TMDGRKQIFKVHLGKIVTNENIEYLTGRLSALTPGFSGADIANCVNEAALIAARTQAKSV 654

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
            ++  +      I  +E   +V   E  K VA
Sbjct: 655 AMLHFEQAIERVIGGLEKKSLVLSPEEKKTVA 686


>gi|111658618|ref|ZP_01409268.1| hypothetical protein SpneT_02000208 [Streptococcus pneumoniae
           TIGR4]
          Length = 630

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 166 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 224 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 275

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 276 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 331

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 332 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 389

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 390 KSIIDASD 397


>gi|89056478|ref|YP_511929.1| ATPase AAA-2 [Jannaschia sp. CCS1]
 gi|88866027|gb|ABD56904.1| ATPase AAA-2 [Jannaschia sp. CCS1]
          Length = 871

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ  A  AV+ A+R      +  A L+DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEDELGKRVIGQHQAVSAVSRAVR------RARAGLQDEGRPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 614 KALAEYLFDDDQAMVRIDMSEFMEKHAVAR 643


>gi|332523822|ref|ZP_08400074.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315086|gb|EGJ28071.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 699

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI S L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEIASRLKAHVIGQDQAVSAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDMFGSKESIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|305431847|ref|ZP_07401014.1| cell division protein FtsH [Campylobacter coli JV20]
 gi|304444931|gb|EFM37577.1| cell division protein FtsH [Campylobacter coli JV20]
          Length = 649

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 213 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 270

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 271 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 324

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 325 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 368


>gi|301059211|ref|ZP_07200149.1| cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300446701|gb|EFK10528.1| cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 630

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 101/287 (35%), Gaps = 35/287 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L +  +  +L   +     PK +LLVG  G GKT ++R +A
Sbjct: 151 EDVAGIDEAKEELGEIVDFLSDPKKFTRLGGRI-----PKGVLLVGSPGTGKTLLARAIA 205

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV-REQA--- 126
             AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V R +    
Sbjct: 206 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFNQGKKNAPCIIFIDEIDAVGRHRGAGL 263

Query: 127 ------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADT 172
                       ++L  + G  +          N  +V    L      D+++ + V D 
Sbjct: 264 GGGHDEREQTLNQLLVEMDGFESNEGVILISATNRPDVLDPALLRPGRFDRQVVVPVPDL 323

Query: 173 SSDISNFDIPGGASVGILNL-SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR--LID 229
                   +     +   NL + + ++         I   V +      R   ++  L D
Sbjct: 324 KGREGILKVHLRKKLVAENLDTSVLARGTPGFTGADIENMVNEAALMAARRGKEKIELED 383

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
            +      +   E   ++  +E  KI A        V+R     D +
Sbjct: 384 FEDAKDKVLMGTERKSMIISEEEKKITAYHESGHTLVARLLPDTDPI 430


>gi|240144375|ref|ZP_04742976.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
 gi|257203626|gb|EEV01911.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82]
          Length = 608

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 197 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 254

Query: 111 INI 113
              
Sbjct: 255 KKN 257


>gi|83999833|emb|CAH60133.1| putative Clp-family ATP-binding protease [Streptomyces
           tenjimariensis]
          Length = 841

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQEDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDAMISLDMSEFSEKHTVSR 590


>gi|15599738|ref|NP_253232.1| ClpB protein [Pseudomonas aeruginosa PAO1]
 gi|116052687|ref|YP_793003.1| clpB protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254238710|ref|ZP_04932033.1| ClpB protein [Pseudomonas aeruginosa C3719]
 gi|296391363|ref|ZP_06880838.1| clpB protein [Pseudomonas aeruginosa PAb1]
 gi|313107187|ref|ZP_07793386.1| clpB protein [Pseudomonas aeruginosa 39016]
 gi|54035903|sp|Q9HVN5|CLPB_PSEAE RecName: Full=Chaperone protein ClpB
 gi|9950786|gb|AAG07930.1|AE004868_1 ClpB protein [Pseudomonas aeruginosa PAO1]
 gi|32423740|gb|AAP81264.1| ClpB [Pseudomonas aeruginosa PA14]
 gi|115587908|gb|ABJ13923.1| clpB protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170641|gb|EAZ56152.1| ClpB protein [Pseudomonas aeruginosa C3719]
 gi|310879888|gb|EFQ38482.1| clpB protein [Pseudomonas aeruginosa 39016]
          Length = 854

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEQELHRRVIGQDEAVVAVSNAVR------RSRAGLADPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|74025930|ref|XP_829531.1| metalloprotease [Trypanosoma brucei TREU927]
 gi|70834917|gb|EAN80419.1| metalloprotease, putative [Trypanosoma brucei]
          Length = 677

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 34/209 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M++     P+    ++       IIG  +AK  +      +++  +  +L A L     P
Sbjct: 152 MEMMNPMKPKNFRVDVKGTTFADIIGIPEAKEDLKQYVDFIKDPKKFTRLGARL-----P 206

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A APF+      F EI  G   + V ++     + A 
Sbjct: 207 KGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREAAP 266

Query: 112 NIVRESRRDEVREQ------------ASINAEERILDALVGKTATS--------NTREVF 151
            IV     D +  +                   ++L  L G T+          N  EV 
Sbjct: 267 CIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPEVI 326

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFD 180
            K L      D+++++ + D S+ +  F+
Sbjct: 327 DKALLREGRFDRKVNVPMPDRSARVELFE 355


>gi|326328800|ref|ZP_08195136.1| putative cell division protein [Nocardioidaceae bacterium Broad-1]
 gi|325953422|gb|EGD45426.1| putative cell division protein [Nocardioidaceae bacterium Broad-1]
          Length = 679

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   + Q + A +     PK +LL G  G GKT ++R +A 
Sbjct: 169 DVAGADEAVEELQEIKEFLQEPAKFQAVGAKI-----PKGVLLYGQPGTGKTLLARAVAG 223

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|325089091|gb|EGC42401.1| matrix AAA protease MAP-1 [Ajellomyces capsulatus H88]
          Length = 917

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 427 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 484

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 485 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 514


>gi|322490859|emb|CBZ26123.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  +   L   L     PK  LL GP G GKT +++ +A+ 
Sbjct: 101 IRGCDEAKKELEEIVEFLKDPEKFYNLGGRL-----PKGALLTGPPGCGKTMLAKAIAKE 155

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ +VG    ++ R+L   A          +    A I  +E  +D
Sbjct: 156 AGVSFFYATGSEFDEM-FVGVGARRV-RELFAAA----------KANSPALIFIDE--VD 201

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL G   ++  S +R    + L + +  D +  + V   ++     D
Sbjct: 202 ALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAATNTPETLD 248


>gi|269101906|ref|ZP_06154603.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161804|gb|EEZ40300.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHRRVIGQNEAVEAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|225175258|ref|ZP_03729254.1| ATPase AAA-2 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169434|gb|EEG78232.1| ATPase AAA-2 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 818

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ +A +A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 505 MESILHKRVIGQDEAVKAISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 558

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA          I+++++++ E            GYVG +
Sbjct: 559 RALAESLFGDEDAMIRLDMSEYMEKHTTARLVGSPPGYVGYD 600


>gi|171742044|ref|ZP_02917851.1| hypothetical protein BIFDEN_01148 [Bifidobacterium dentium ATCC
           27678]
 gi|171277658|gb|EDT45319.1| hypothetical protein BIFDEN_01148 [Bifidobacterium dentium ATCC
           27678]
          Length = 917

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 612 MEEYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 666

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 667 ALADFLFDDEKAMVRIDMSEYMEKASVSR 695


>gi|115389874|ref|XP_001212442.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
 gi|114194838|gb|EAU36538.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
          Length = 748

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 457 DDVAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 514

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 515 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 545


>gi|23335984|ref|ZP_00121214.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Bifidobacterium longum DJO10A]
 gi|239620927|ref|ZP_04663958.1| ClpB [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|322690037|ref|YP_004209771.1| Clp protease [Bifidobacterium longum subsp. infantis 157F]
 gi|239516188|gb|EEQ56055.1| ClpB [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|320461373|dbj|BAJ71993.1| Clp protease [Bifidobacterium longum subsp. infantis 157F]
          Length = 894

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|319945969|ref|ZP_08020218.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
 gi|319747777|gb|EFW00022.1| cell division protein FtsH [Streptococcus australis ATCC 700641]
          Length = 657

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +E +      + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT
Sbjct: 178 TNKEDIKVRFSDVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKT 235

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +++ +A  AG PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 236 LLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|313893296|ref|ZP_07826871.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442192|gb|EFR60609.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 815

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ DA  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 502 LEKELHKRVVGQDDAVTAVAKAVR------RARAGLKDPKRPIGSFLFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA       +  I+++++++ E   V R V
Sbjct: 556 RALASSLFGDESAMIRLDMSEYMEKHTVSRLV 587


>gi|312874877|ref|ZP_07734896.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2053A-b]
 gi|325913172|ref|ZP_08175542.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B]
 gi|311089622|gb|EFQ48047.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF
           2053A-b]
 gi|325477593|gb|EGC80735.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B]
          Length = 681

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 206 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 260

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 261 VEM-FVGVGASRV-RDLFDNA 279


>gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
 gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
          Length = 765

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASRV-RDLFEQA 275


>gi|323526162|ref|YP_004228315.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1001]
 gi|323383164|gb|ADX55255.1| ATP-dependent chaperone ClpB [Burkholderia sp. CCGE1001]
          Length = 865

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHERVIGQDEAINAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|240280655|gb|EER44159.1| matrix AAA protease MAP-1 [Ajellomyces capsulatus H143]
          Length = 917

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 427 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 484

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 485 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 514


>gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 910

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 37  RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R+ R           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG
Sbjct: 197 RYERLGA-------KIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVG 248

Query: 97  RNVEQIIRDLVDVA 110
               ++ RDL   A
Sbjct: 249 VGASRV-RDLFTQA 261


>gi|229547888|ref|ZP_04436613.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis ATCC 29200]
 gi|229306909|gb|EEN72905.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis ATCC 29200]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|225560801|gb|EEH09082.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 917

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 427 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 484

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 485 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 514


>gi|224131152|ref|XP_002328467.1| predicted protein [Populus trichocarpa]
 gi|222838182|gb|EEE76547.1| predicted protein [Populus trichocarpa]
          Length = 186

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARLAG 78
            GQ+  KR +   +R      +   + +D+    PK +LL GP G GKT +++ +A  AG
Sbjct: 6   AGQEYIKRELQEIVR----ILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG 61

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF     T F E+ +VG    ++ +DL   A
Sbjct: 62  LPFFAANGTDFVEM-FVGVAASRV-KDLFASA 91


>gi|123425085|ref|XP_001306726.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121888316|gb|EAX93796.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 440

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+AV  A+    +   L  +LR+   P+ +L  GP G GKT I++ LA  A
Sbjct: 170 EDIAGLDHAKQAVQEAIILPMKYPDLFTELREP--PRGVLFFGPPGTGKTLIAKALATEA 227

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
              F  +  +  T   +VG   E++ R L  +A
Sbjct: 228 QCTFFNISASSLT-SKWVGEG-EKLTRALFALA 258


>gi|328856760|gb|EGG05880.1| hypothetical protein MELLADRAFT_48667 [Melampsora larici-populina
           98AG31]
          Length = 910

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           +K T     R +   L + ++GQ +A +AVA A+     R        +     + L  G
Sbjct: 572 LKATEKMKLRMMEQGLMKQVVGQPEAVKAVADAI-----RLSRSGLSNESRPIASFLFCG 626

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117
           P+G GKT +++ LA+          +++ ++++E   V R +      +       + E 
Sbjct: 627 PSGTGKTLLTKALAKFLFDSEDAICRIDGSEYSEKHSVSRLIGSPPGYVGHEEGGTLTEW 686

Query: 118 RRDE 121
            R +
Sbjct: 687 VRRK 690


>gi|325205770|gb|ADZ01223.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M04-240196]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|323344493|ref|ZP_08084718.1| chaperone protein ClpB [Prevotella oralis ATCC 33269]
 gi|323094620|gb|EFZ37196.1| chaperone protein ClpB [Prevotella oralis ATCC 33269]
          Length = 863

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 105/284 (36%), Gaps = 29/284 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 561 LEEELHKRVIGQDEAITAVADAVR------RSRAGLQDPKRPIASFIFLGTTGVGKTELA 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA           +++++++ E            GYVG +       L +        
Sbjct: 615 KALAEYLFNDETMMTRIDMSEYQEKFSVSRLIGAPPGYVGYD---EGGQLTEAVRRKPYS 671

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T N       K     ++       +      +
Sbjct: 672 VLLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRTVNFKNTIIIMTSNLGSQYIQQQFEQM 731

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           ++ +     +     + E+  + +      +I  ++   +  L +DE  +++ +   +  
Sbjct: 732 NDTNREEKIAETKREVMEMLKRTIRPEFLNRIDETIM--FMPLTKDEIAKVVILQMKNVQ 789

Query: 237 SIQMVENYGI-VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279
            + + + + +    D  D +   D G         V+R +   V
Sbjct: 790 KMLLAQGFTLNWTPDAIDYLA--DVGFDPEFGARPVKRAIQRYV 831


>gi|291087305|ref|ZP_06346033.2| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
 gi|291075290|gb|EFE12654.1| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1]
          Length = 597

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 158 IVDFLKNPQKYTGVGARI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDF 212

Query: 90  TEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            E+ +VG     V  +  D    A  IV     D V  Q
Sbjct: 213 VEM-FVGVGASRVRDLFEDAKKNAPCIVFIDEIDAVARQ 250


>gi|254456984|ref|ZP_05070412.1| peptidase M41, FtsH [Campylobacterales bacterium GD 1]
 gi|207085776|gb|EDZ63060.1| peptidase M41, FtsH [Campylobacterales bacterium GD 1]
          Length = 663

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  V      L+   R  ++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 177 DDVAGVEEAKEEVQEIVDFLKYPARYVEIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 231

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 232 GEADVPFFSVSGSSFIEM-FVGVGAARV-RDLFEQA 265


>gi|51246949|ref|YP_066833.1| cell division protein FtsH [Desulfotalea psychrophila LSv54]
 gi|50877986|emb|CAG37826.1| probable cell division protein FtsH [Desulfotalea psychrophila
           LSv54]
          Length = 684

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           K      P E  +     + G  +AK  +   + +  +      DL   + P  +LL GP
Sbjct: 139 KTKAKLIPEENNTVTFADVAGIDEAKEELEEIV-DFLKDPSKFTDLGGNI-PTGVLLSGP 196

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESR 118
            G GKT ++R +A  A  PF  +  + F E+ +VG     V  +  +    A  I+    
Sbjct: 197 PGTGKTLLARAIAGEAQVPFFTISGSDFVEM-FVGVGASRVRDMFAEGKKSAPCIIFIDE 255

Query: 119 RDEV 122
            D V
Sbjct: 256 IDAV 259


>gi|37525541|ref|NP_928885.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784969|emb|CAE13887.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 758

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  A+  A++            +D     + LL GPTGVGKT +
Sbjct: 449 RTLDERLKMLVFGQDSAIAALTEAIK-----MSRAGLGQDNKPVGSFLLAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA++     ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 504 TVQLAKVLNIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 558


>gi|315653939|ref|ZP_07906855.1| cell division protein FtsH [Lactobacillus iners ATCC 55195]
 gi|315488635|gb|EFU78281.1| cell division protein FtsH [Lactobacillus iners ATCC 55195]
          Length = 681

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 206 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 260

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 261 VEM-FVGVGASRV-RDLFDNA 279


>gi|291516569|emb|CBK70185.1| ATP-dependent chaperone ClpB [Bifidobacterium longum subsp. longum
           F8]
          Length = 894

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|195396369|ref|XP_002056804.1| GJ16718 [Drosophila virilis]
 gi|194146571|gb|EDW62290.1| GJ16718 [Drosophila virilis]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 358 LFRDVAGLSEAKQEVKEFVDYLKTPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 412

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 413 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 464


>gi|153952359|ref|YP_001397772.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939805|gb|ABS44546.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|86158199|ref|YP_464984.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774710|gb|ABC81547.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 702

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR           +PK +LLVGP G GKT ++R  A  AG PF  +  ++F E+ +VG 
Sbjct: 230 YRRLGG-------RIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGV 281

Query: 98  NVEQIIRDLVDVA 110
              ++ RDL   A
Sbjct: 282 GAARV-RDLFAQA 293


>gi|81429209|ref|YP_396210.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
 gi|78610852|emb|CAI55904.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein
           FtsH) [Lactobacillus sakei subsp. sakei 23K]
          Length = 696

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 191 DVAGAEEEKQELVEVVEFLKDPRKFVALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 245

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 246 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 278


>gi|86150355|ref|ZP_01068581.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596161|ref|ZP_01099398.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562730|ref|YP_002344509.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839180|gb|EAQ56443.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191002|gb|EAQ94974.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360436|emb|CAL35233.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926536|gb|EFV05917.1| Membrane bound zinc metallopeptidase FtsH [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929883|gb|EFV09043.1| cell division protease FtsH [Campylobacter jejuni subsp. jejuni
           305]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|317008936|gb|ADU79516.1| cell division protein [Helicobacter pylori India7]
          Length = 550

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVVDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHVLNYLKIAKICVGFSGAMLATLINESALNALKHQREEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 AESDILEVKDKIA 398


>gi|304373318|ref|YP_003856527.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
 gi|304309509|gb|ADM21989.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1]
          Length = 726

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 38/218 (17%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +   +   RN  +     A +     PK ILL GP G GKT I++  A 
Sbjct: 238 DVAGNVEVKEEIEEFVDYLRNPKKYASAGAKI-----PKGILLGGPPGTGKTLIAKATAG 292

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            A  PF  +  + F E+ YVG   +++ R+L   A              +A   A    +
Sbjct: 293 EANVPFFFISASNFVEL-YVGVGAKRV-RELFKDA--------------RAEAPAI-IFI 335

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
           D L     +  +        R+  ++   ++++           +  G   +   N +++
Sbjct: 336 DELDAIGRSRGSGIGGGNDEREQTLNQLLVEMD--------GMVENSGLLIIAATNRTDV 387

Query: 196 FSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLI 228
               +    +    + V     ++    L      + I
Sbjct: 388 LDPALMRPGRFDRTVIVNYPDIKEREEILKLHAKGKRI 425


>gi|282599428|ref|YP_003358318.1| hypothetical protein PP-LUZ7_gp036 [Pseudomonas phage LUZ7]
 gi|259048527|emb|CAZ66177.1| hypothetical protein [Pseudomonas phage LUZ7]
          Length = 280

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 23/181 (12%)

Query: 246 IVFLDEFDK--IVARDSGNGIGVSREGVQRDLLPLVEGSSVST-----KYGSINTDHILF 298
           +VF DEFDK  I    + +    S  GVQ + L ++E           KY  +N   +LF
Sbjct: 89  VVFADEFDKLLISGNSNSDLAHESTAGVQNEFLKMLESDITKVYGDYGKYQEVNVGKVLF 148

Query: 299 IASGAFHVS--------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350
           I +GAF+          R   +  E  GR P+  HL+     D   +L    S L+  Y 
Sbjct: 149 IFAGAFNGVDMNNLDDLRSVGVKNEFLGRVPLHFHLEKPTLEDLLGLLN--RSALMEGYL 206

Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410
           EL  +  +     + +  A+A+ A+        +G R + T++ +   +  F A    +K
Sbjct: 207 ELFSS--VK---RDTARKAIAE-AIKQGYDSNTLGVRFINTLVHQYFIEGGFQAKKPSQK 260

Query: 411 T 411
            
Sbjct: 261 R 261



 Score = 37.2 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 39 RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
          RR           +  + +L G +G GK+   + +A     PF+++   + T+ G  G
Sbjct: 13 RRCMTVHMESIGTVRPHFILTGSSGAGKSYTVQAIAEELDLPFVEINCAQLTKEGLSG 70


>gi|225619526|ref|YP_002720783.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Brachyspira
           hyodysenteriae WA1]
 gi|225214345|gb|ACN83079.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Brachyspira
           hyodysenteriae WA1]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A  +VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 566 QLEEVLHKRVVGQDEAITSVADAIR------RNRAGLSDENKPLGSFLFIGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA           +++++++ E            GYVG +
Sbjct: 620 AKTLADFLFSDEHALTRIDMSEYMEKFSVTRLIGAPPGYVGYD 662


>gi|329920463|ref|ZP_08277195.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           1401G]
 gi|328936139|gb|EGG32592.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN
           1401G]
          Length = 681

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 206 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 260

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 261 VEM-FVGVGASRV-RDLFDNA 279


>gi|325134551|gb|EGC57195.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M13399]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|325128567|gb|EGC51440.1| ATP-dependent chaperone ClpB [Neisseria meningitidis N1568]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|323450113|gb|EGB05996.1| hypothetical protein AURANDRAFT_4792 [Aureococcus anophagefferens]
          Length = 191

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I GQ++A    R VA  +R+R R   + A       PK +LL GP G GKT +++ LA
Sbjct: 8   DDIGGQKEAVTALRDVADFVRDRERFAAVGA-----APPKGVLLHGPPGCGKTLLAKALA 62

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA-- 130
           R + A F     + F E+  G   + V ++  +    A ++V     D + ++ S  A  
Sbjct: 63  RESNATFFSASGSSFVEVYSGLGAKRVRELFAEARAHAPSVVFIDEIDALAKRRSSGAPG 122

Query: 131 ----EER 133
               EER
Sbjct: 123 AGGNEER 129


>gi|304399169|ref|ZP_07381036.1| ATP-dependent chaperone ClpB [Pantoea sp. aB]
 gi|304353223|gb|EFM17603.1| ATP-dependent chaperone ClpB [Pantoea sp. aB]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHGRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|269121222|ref|YP_003309399.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
           33386]
 gi|268615100|gb|ACZ09468.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
           33386]
          Length = 682

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + +   LRN  +  +  A      +PK +LL+G  G GKT +++ +A
Sbjct: 202 DDVAGVDEAKEELKEIVEFLRNPEKFTKAGA-----RVPKGVLLLGRPGTGKTLLAKAVA 256

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +GA F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 257 GESGASFFSISGSEFVEM-FVGVGASRV-RDLFEKA 290


>gi|215408577|emb|CAR31138.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|19353950|gb|AAH24466.1| Spg7 protein [Mus musculus]
          Length = 474

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A
Sbjct: 2   QDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVA 56

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 57  TEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 109


>gi|147675005|ref|YP_001216203.1| clpB protein [Vibrio cholerae O395]
 gi|262170007|ref|ZP_06037697.1| ClpB protein [Vibrio cholerae RC27]
 gi|146316888|gb|ABQ21427.1| clpB protein [Vibrio cholerae O395]
 gi|227012536|gb|ACP08746.1| clpB protein [Vibrio cholerae O395]
 gi|262021741|gb|EEY40452.1| ClpB protein [Vibrio cholerae RC27]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|153215108|ref|ZP_01949815.1| clpB protein [Vibrio cholerae 1587]
 gi|153826762|ref|ZP_01979429.1| clpB protein [Vibrio cholerae MZO-2]
 gi|229530515|ref|ZP_04419903.1| ClpB protein [Vibrio cholerae 12129(1)]
 gi|254224985|ref|ZP_04918599.1| clpB protein [Vibrio cholerae V51]
 gi|254291987|ref|ZP_04962767.1| clpB protein [Vibrio cholerae AM-19226]
 gi|297580832|ref|ZP_06942758.1| chaperone clpB [Vibrio cholerae RC385]
 gi|124114899|gb|EAY33719.1| clpB protein [Vibrio cholerae 1587]
 gi|125622372|gb|EAZ50692.1| clpB protein [Vibrio cholerae V51]
 gi|149739413|gb|EDM53653.1| clpB protein [Vibrio cholerae MZO-2]
 gi|150422126|gb|EDN14093.1| clpB protein [Vibrio cholerae AM-19226]
 gi|229332288|gb|EEN97776.1| ClpB protein [Vibrio cholerae 12129(1)]
 gi|297535248|gb|EFH74083.1| chaperone clpB [Vibrio cholerae RC385]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|324113822|gb|EGC07797.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           fergusonii B253]
 gi|325496826|gb|EGC94685.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia
           fergusonii ECD227]
          Length = 759

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 449 TLKSLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHDHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 559


>gi|315150882|gb|EFT94898.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0012]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|154278052|ref|XP_001539851.1| hypothetical protein HCAG_05318 [Ajellomyces capsulatus NAm1]
 gi|150413436|gb|EDN08819.1| hypothetical protein HCAG_05318 [Ajellomyces capsulatus NAm1]
          Length = 917

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 427 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 484

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 485 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 514


>gi|86150719|ref|ZP_01068935.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|157415377|ref|YP_001482633.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315124593|ref|YP_004066597.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841889|gb|EAQ59135.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|157386341|gb|ABV52656.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748018|gb|ADN91288.1| Cell division protease ftsH-like protein [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315018315|gb|ADT66408.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315932256|gb|EFV11199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 327]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|86152928|ref|ZP_01071133.1| putative Cell division protein FtsH homolog [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|205355861|ref|ZP_03222630.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|85843813|gb|EAQ61023.1| putative Cell division protein FtsH homolog [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|205346295|gb|EDZ32929.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284926344|gb|ADC28696.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|238790743|ref|ZP_04634504.1| Chaperone protein clpB 1 [Yersinia frederiksenii ATCC 33641]
 gi|238721184|gb|EEQ12863.1| Chaperone protein clpB 1 [Yersinia frederiksenii ATCC 33641]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|323455105|gb|EGB10974.1| hypothetical protein AURANDRAFT_11529 [Aureococcus anophagefferens]
          Length = 342

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)

Query: 8   SPRE---IVSELD-------RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57
           SP E   +   LD         + G + AKR +  A+   + R  L   LR    PK +L
Sbjct: 99  SPHEAQILAEMLDASPGVGWSDVKGLEGAKRTLKEAVVLPYLRPDLYKGLRSP--PKGVL 156

Query: 58  LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           L GP G GKT ++  +A  +   F  +  +  T   ++G   E++++ L  VA
Sbjct: 157 LFGPPGTGKTLLAECVASESRFAFFALSASALT-SKWLGEG-EKLVKALFKVA 207


>gi|322375228|ref|ZP_08049742.1| cell division protein FtsH [Streptococcus sp. C300]
 gi|321280728|gb|EFX57767.1| cell division protein FtsH [Streptococcus sp. C300]
          Length = 652

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLADDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|311280208|ref|YP_003942439.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Enterobacter
           cloacae SCF1]
 gi|308749403|gb|ADO49155.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Enterobacter
           cloacae SCF1]
          Length = 758

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++            +D     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGQDHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|298501803|ref|YP_003723743.1| cell division protein FtsH [Streptococcus pneumoniae TCH8431/19A]
 gi|298237398|gb|ADI68529.1| cell division protein FtsH [Streptococcus pneumoniae TCH8431/19A]
          Length = 652

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 291


>gi|300861491|ref|ZP_07107575.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           faecalis TUSoD Ef11]
 gi|295114559|emb|CBL33196.1| ATPases with chaperone activity, ATP-binding subunit [Enterococcus
           sp. 7L76]
 gi|300848952|gb|EFK76705.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
           faecalis TUSoD Ef11]
 gi|315143909|gb|EFT87925.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2141]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|238756475|ref|ZP_04617782.1| Chaperone protein clpB 1 [Yersinia ruckeri ATCC 29473]
 gi|238705324|gb|EEP97734.1| Chaperone protein clpB 1 [Yersinia ruckeri ATCC 29473]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALATFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|229525361|ref|ZP_04414766.1| ClpB protein [Vibrio cholerae bv. albensis VL426]
 gi|229338942|gb|EEO03959.1| ClpB protein [Vibrio cholerae bv. albensis VL426]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|254390081|ref|ZP_05005302.1| chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|294813489|ref|ZP_06772132.1| Chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|326442105|ref|ZP_08216839.1| putative ATP-dependent protease subunit [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703789|gb|EDY49601.1| chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
 gi|294326088|gb|EFG07731.1| Chaperone protein clpB [Streptomyces clavuligerus ATCC 27064]
          Length = 865

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRLIGQSEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|163735915|ref|ZP_02143343.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           litoralis Och 149]
 gi|161390851|gb|EDQ15192.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           litoralis Och 149]
          Length = 872

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ+ A RA++ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEDQLHGRVIGQEPAVRAISNAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 615 KAVAEFLFDDDNAMVRIDMSEFMEKHAVSR 644


>gi|57237998|ref|YP_179247.1| cell division protein FtsH [Campylobacter jejuni RM1221]
 gi|57166802|gb|AAW35581.1| cell division protein FtsH [Campylobacter jejuni RM1221]
 gi|315058557|gb|ADT72886.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|121612703|ref|YP_001000794.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005709|ref|ZP_02271467.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249221|gb|EAQ72182.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 645

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|34763207|ref|ZP_00144171.1| Cell division protein ftsH [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887117|gb|EAA24224.1| Cell division protein ftsH [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 673

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 267 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGQPGTGKTLLAKAVAG 321

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 322 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 373


>gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510]
 gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510]
          Length = 593

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  R     A      +PK +LLVGP G GKT +++  A 
Sbjct: 155 DVAGVDEAKEELRETVQFLKDPRRFAMAGA-----RVPKGLLLVGPPGTGKTMLAKAAAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF     + F E+ +VG    ++ R+L   A
Sbjct: 210 EAGVPFFAASGSDFVEM-FVGLGAARV-RNLFKTA 242


>gi|227818348|ref|YP_002822319.1| ATPase AAA [Sinorhizobium fredii NGR234]
 gi|227337347|gb|ACP21566.1| carboxy-terminus of ATPase with conserved AAA-2 domain
           [Sinorhizobium fredii NGR234]
          Length = 595

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   +IGQ++A +AV+ A+     R                L +GPTGVGKT +++
Sbjct: 259 MEEKLHERVIGQEEAIKAVSDAV-----RLARAGLREGRKPVATFLFLGPTGVGKTELAK 313

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA +        ++++++++ E   V R V
Sbjct: 314 ALAEIVYGDEDAMVRLDMSEYMERHTVARLV 344


>gi|218548405|ref|YP_002382196.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218355946|emb|CAQ88561.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia fergusonii
           ATCC 35469]
          Length = 764

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 454 TLKSLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHDHKPVGSFLFAGPTGVGKT 508

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 509 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 564


>gi|332977082|gb|EGK13886.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 504

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   +K+ +  AL     R Q+       +  K ILL GP G GKT +++  A   
Sbjct: 69  EDIGGHARSKKELKEALDFLIHRDQIKQYGIRPI--KGILLSGPPGTGKTLMAKAAAHYT 126

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F     ++F E+ YVG   ++I R+L   A    R   R   +  A I  +E  +D 
Sbjct: 127 DSVFAATSGSEFVEM-YVGVGAQRI-RELFRDA----RTQARKNQKNSAIIFIDE--IDV 178

Query: 138 LVGKTATSNTREVFRKKLR-----DGEISDKEIDIEVADTSSDISNFD 180
           + G+   S  RE  +   +     DG  +D+E+ + V   ++     D
Sbjct: 179 IGGQREGSQHREYDQTLNQLLTEMDGITTDQEVQVLVVAATNRKDMLD 226


>gi|290476239|ref|YP_003469139.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus bovienii SS-2004]
 gi|289175572|emb|CBJ82375.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus bovienii SS-2004]
          Length = 860

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 565 MEHELHKRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 619 KALANFLFDSDDAMVRLDMSEFMEKHTVSRLV 650


>gi|289166921|ref|YP_003445188.1| cell-division protein [Streptococcus mitis B6]
 gi|288906486|emb|CBJ21316.1| cell-division protein [Streptococcus mitis B6]
          Length = 652

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|261839142|gb|ACX98907.1| cell division protein [Helicobacter pylori 52]
          Length = 550

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q +E 
Sbjct: 326 ISLPDLLERQNILEKLLENKKHMLNYLKIAKICVGFSGAMLATLINESALNALKHQRIEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 TESDILEVKDKIA 398


>gi|161870340|ref|YP_001599510.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           meningitidis 053442]
 gi|161595893|gb|ABX73553.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           meningitidis 053442]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|157065028|gb|ABV04347.1| membrane protein FtsH1 [Toxoplasma gondii]
          Length = 1250

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   LR+  + ++L A L     PK +LLVGP G GKTA++R +A
Sbjct: 351 NDLAGLTEAKTELQEVVQFLRDPSKFERLGARL-----PKGVLLVGPPGTGKTALARAVA 405

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG P+     ++F EI YVG+   ++ R L   A N 
Sbjct: 406 TEAGVPYFYASGSEFVEI-YVGQGARRV-RGLFSYARNH 442


>gi|121635155|ref|YP_975400.1| ClpB protein [Neisseria meningitidis FAM18]
 gi|120866861|emb|CAM10620.1| ClpB protein [Neisseria meningitidis FAM18]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|71065383|ref|YP_264110.1| putative chaperonin clpA/B [Psychrobacter arcticus 273-4]
 gi|71038368|gb|AAZ18676.1| putative chaperonin clpA/B [Psychrobacter arcticus 273-4]
          Length = 865

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 566 MEENLHERVIGQDEAVEAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 620 KSLANFLFDSEDAIVRIDMSEYMEKHSVSRLV 651


>gi|152968278|ref|YP_001364062.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151362795|gb|ABS05798.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 840

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + +IGQ DA +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 509 MEAELHKRVIGQNDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 562

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F+E   V R
Sbjct: 563 KALAEFLFGEEDALIQLDMSEFSEKHTVSR 592


>gi|328773026|gb|EGF83063.1| hypothetical protein BATDEDRAFT_18251 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 292

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I+G   AK+A+   +     R +L   LR     + +LL GP G GKT +++ LA+ +
Sbjct: 19  EDIVGLDAAKQALREIVVLPNLRPELFTGLRAP--ARGVLLFGPPGTGKTMLAKALAKES 76

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +  +  T   Y G   E+++R L ++A
Sbjct: 77  KATFFSISASTLT-SKYFGEG-EKMVRSLFEMA 107


>gi|326384837|ref|ZP_08206513.1| ATP-dependent chaperone ClpB [Gordonia neofelifaecis NRRL B-59395]
 gi|326196499|gb|EGD53697.1| ATP-dependent chaperone ClpB [Gordonia neofelifaecis NRRL B-59395]
          Length = 850

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ DA +AV+ A+R      +  A + D   P  + L +GPTG GKT ++
Sbjct: 566 MEDELGKRVIGQLDAVKAVSDAVR------RARAGVADPNRPLGSFLFLGPTGTGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 620 KALAEFMFDDERAIVRIDMSEYGEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|256963095|ref|ZP_05567266.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
 gi|307272616|ref|ZP_07553867.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0855]
 gi|256953591|gb|EEU70223.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
 gi|306510718|gb|EFM79737.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0855]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|256854930|ref|ZP_05560294.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
 gi|307290756|ref|ZP_07570654.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0411]
 gi|256710490|gb|EEU25534.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
 gi|306498176|gb|EFM67695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0411]
 gi|315030822|gb|EFT42754.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4000]
          Length = 831

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|291457035|ref|ZP_06596425.1| ATP-dependent chaperone protein ClpB [Bifidobacterium breve DSM
           20213]
 gi|291380870|gb|EFE88388.1| ATP-dependent chaperone protein ClpB [Bifidobacterium breve DSM
           20213]
          Length = 894

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|157877019|ref|XP_001686849.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase
 gi|68129924|emb|CAJ09230.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain
           Friedlin]
          Length = 571

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  +   L   L     PK  LL GP G GKT +++ +A+ 
Sbjct: 101 IRGCDEAKKELEEIVEFLKDPEKFYNLGGRL-----PKGALLTGPPGCGKTMLAKAIAKE 155

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ +VG    ++ R+L   A          +    A I  +E  +D
Sbjct: 156 AGVSFFYATGSEFDEM-FVGVGARRV-RELFAAA----------KANSPALIFIDE--VD 201

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL G   ++  S +R    + L + +  D +  + V   ++     D
Sbjct: 202 ALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAATNTPETLD 248


>gi|32141212|ref|NP_733613.1| ATP-dependent protease ATP-binding subunit [Streptomyces coelicolor
           A3(2)]
 gi|256786837|ref|ZP_05525268.1| ATP-dependent protease ATP-binding subunit [Streptomyces lividans
           TK24]
 gi|289770731|ref|ZP_06530109.1| ATP-dependent chaperone ClpB [Streptomyces lividans TK24]
 gi|54035844|sp|Q8CJV9|CLPB_STRCO RecName: Full=Chaperone protein ClpB
 gi|24427167|emb|CAD55328.1| ATP-dependent protease ATP-binding subunit [Streptomyces coelicolor
           A3(2)]
 gi|289700930|gb|EFD68359.1| ATP-dependent chaperone ClpB [Streptomyces lividans TK24]
          Length = 865

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGKRLIGQTQAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYSEKHSVARLV 651


>gi|325204458|gb|ADY99911.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M01-240355]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|325568178|ref|ZP_08144619.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
 gi|325158379|gb|EGC70530.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755]
          Length = 702

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPLSDDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|325144759|gb|EGC67052.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M01-240013]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|323487347|ref|ZP_08092647.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323694214|ref|ZP_08108390.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
 gi|323399392|gb|EGA91790.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum
           WAL-14163]
 gi|323501687|gb|EGB17573.1| cell division protein FtsH [Clostridium symbiosum WAL-14673]
          Length = 592

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK ++LVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 166 IVDFLKNPQKYTGVGARI-----PKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 220

Query: 90  TEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            E+ +VG     V  +  D    A  IV     D V  Q
Sbjct: 221 VEM-FVGVGASRVRDLFEDAKKNAPCIVFIDEIDAVARQ 258


>gi|322696275|gb|EFY88070.1| matrix AAA protease MAP-1 [Metarhizium acridum CQMa 102]
          Length = 904

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 414 DVAGLEEAKTEIMEFV-SFLKQPEKFEKLGAKI-PRGAILAGPPGTGKTLLAKATAGESG 471

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS------- 127
            PF  V  ++F E+ +VG     V  +  +    A  I+     D + R +         
Sbjct: 472 VPFFSVSGSEFVEM-FVGVGPSRVRDLFAEGRKNAPCIIFIDEIDAIGRARMESGRGFGG 530

Query: 128 ----INAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    +IL  + G          A +N  ++  K L      D+ I I+    S  
Sbjct: 531 NDEREATLNQILTEMDGFNTREQVVVLAGTNRADILDKALMRPGRFDRHIFIDRPTMSGR 590

Query: 176 ISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDRLIDM 230
              F +       +     L    + +        I   V +          E  ++I  
Sbjct: 591 KEIFKVYLKKIVTNEDQDFLVGRLATLTPGFSGADISNVVNEAALIAARGNAEEVKMIHF 650

Query: 231 DTVHRDSIQMVENYGIVF 248
           +      I  +E   +V 
Sbjct: 651 ERAIERVIGGLERKSLVL 668


>gi|331220862|ref|XP_003323106.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309302096|gb|EFP78687.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 830

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L++  R  +L   L     P+ +LL GP G GKT ++R +A 
Sbjct: 383 DVHGCDEAKEELKEVVDFLKDPLRFARLGGRL-----PRGVLLTGPPGTGKTLLARAVAG 437

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQI 102
            AG  F     ++F E+ YVG    +I
Sbjct: 438 EAGVQFFIASGSEFDEM-YVGVGARRI 463


>gi|307110547|gb|EFN58783.1| hypothetical protein CHLNCDRAFT_140544 [Chlorella variabilis]
          Length = 751

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +N  + ++L A +     PK  LLVGP G GKT +++  A
Sbjct: 380 KDVAGCDEAKVEIMEFVNFLKNPGKYKELGAKI-----PKGALLVGPPGTGKTLLAKATA 434

Query: 75  RLAGAPFIKVEVTKFTEIGYVG 96
             AG PF+ +  + F E+ +VG
Sbjct: 435 GEAGVPFLTISGSDFMEM-FVG 455


>gi|260886964|ref|ZP_05898227.1| ATP-dependent chaperone protein ClpB [Selenomonas sputigena ATCC
           35185]
 gi|330839249|ref|YP_004413829.1| ATP-dependent chaperone ClpB [Selenomonas sputigena ATCC 35185]
 gi|260863026|gb|EEX77526.1| ATP-dependent chaperone protein ClpB [Selenomonas sputigena ATCC
           35185]
 gi|329747013|gb|AEC00370.1| ATP-dependent chaperone ClpB [Selenomonas sputigena ATCC 35185]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 564 LEDVLHERVVGQDEAVRVVSEAI------LRARAGIKDPNRPIGSFIFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 618 KTLAEALFDDDRSMIRIDMSEYMEKHSVAR 647


>gi|254805248|ref|YP_003083469.1| putative ClpB protein [Neisseria meningitidis alpha14]
 gi|254668790|emb|CBA06732.1| putative ClpB protein [Neisseria meningitidis alpha14]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|225375862|ref|ZP_03753083.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
 gi|225212297|gb|EEG94651.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM
           16841]
          Length = 598

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 182 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 239

Query: 111 INI 113
              
Sbjct: 240 KKN 242


>gi|206895236|ref|YP_002247205.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737853|gb|ACI16931.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 805

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 14/218 (6%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLV 59
           ++L       EI   L R I+GQ +A  AVA A+R      +    L+D+  P  + L +
Sbjct: 485 LRLDDKKKLLEIEDYLHRRIVGQNEAVTAVAKAIR------RSRTGLQDDRRPIGVFLFL 538

Query: 60  GPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
           GPTGVGKT ++R LA          I+++++++ E   V R V      +          
Sbjct: 539 GPTGVGKTELARALAEFMFGEEEALIRIDMSEYMEKFNVSRLVGAPPGYV----GYEEGG 594

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              + VR +         ++           +     +L DG+    +    +   +S++
Sbjct: 595 QLTEAVRRKPHSIVLLDEIEKAHPDVFDILLQIFEDGRLTDGQGRVVDFRNTIIIMTSNL 654

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
            + DI  G ++G L     F  +         +    +
Sbjct: 655 GSRDISAGTTIGFLKDQVKFENMENLVMDAVKKFFKPE 692


>gi|183597507|ref|ZP_02959000.1| hypothetical protein PROSTU_00781 [Providencia stuartii ATCC 25827]
 gi|188023153|gb|EDU61193.1| hypothetical protein PROSTU_00781 [Providencia stuartii ATCC 25827]
          Length = 857

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 562 MEQQLHQRVIGQDEAVVAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|146102932|ref|XP_001469447.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase [Leishmania
           infantum]
 gi|134073817|emb|CAM72556.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania
           infantum JPCM5]
 gi|322503637|emb|CBZ38723.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  +   L   L     PK  LL GP G GKT +++ +A+ 
Sbjct: 101 IRGCDEAKKELEEIVEFLKDPEKFYNLGGRL-----PKGALLTGPPGCGKTMLAKAIAKE 155

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ +VG    ++ R+L   A          +    A I  +E  +D
Sbjct: 156 AGVSFFYATGSEFDEM-FVGVGARRV-RELFAAA----------KANSPALIFIDE--VD 201

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL G   ++  S +R    + L + +  D +  + V   ++     D
Sbjct: 202 ALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAATNTPETLD 248


>gi|332762938|gb|EGJ93188.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri K-671]
          Length = 747

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +++   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 437 TLKKLSDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 491

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 492 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 547


>gi|328951491|ref|YP_004368826.1| ATP-dependent chaperone ClpB [Marinithermus hydrothermalis DSM
           14884]
 gi|328451815|gb|AEB12716.1| ATP-dependent chaperone ClpB [Marinithermus hydrothermalis DSM
           14884]
          Length = 855

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 553 LEDELRKRVVGQDEAIVAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELA 606

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++T++ E   V R
Sbjct: 607 KTLAATLFDSEEAMVRIDMTEYMEKHAVAR 636


>gi|325130543|gb|EGC53296.1| ATP-dependent chaperone ClpB [Neisseria meningitidis OX99.30304]
          Length = 859

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|297626575|ref|YP_003688338.1| FtsH [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922340|emb|CBL56912.1| FtsH [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 716

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 24  QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83
           +D  R +   LRN  + +++ A       PK +LL G  G GKT ++R  A  A  PF  
Sbjct: 237 EDEVRQIVDFLRNPDKYRKVGA-----RAPKGVLLEGEPGTGKTLLARATAGEAEVPFFS 291

Query: 84  VEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQA 126
              ++F E  +G   + V Q+  +    A  I+     D + R +A
Sbjct: 292 ASASEFIEMIVGVGAQRVRQLFEEARKAAPAIIFIDEIDAIGRSRA 337


>gi|212637926|ref|YP_002314446.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
 gi|212559406|gb|ACJ32461.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
           flavithermus WK1]
          Length = 813

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 34/262 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ++A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 504 KLEEILHSRVIGQEEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 557

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           +R LA          I+++++++ E     R V      +       + E  R +     
Sbjct: 558 ARALAEAMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVI 617

Query: 124 -----EQASINAEERILDAL-VGKTATSNTREV-FRKKL--------RDGEISDKEIDIE 168
                E+A  +    +L  L  G+   S  R V FR  +         D    +K +   
Sbjct: 618 LLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIIIMTSNVGADALKRNKYVGFN 677

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKV-----MGSGRKKKIRMSVQKCYPELMRDE 223
           V D S    +        +      E  +++       S  KK ++  V     +L +  
Sbjct: 678 VQDESQQYKDMKGKVMDELKKAFRPEFLNRIDEIIVFHSLEKKHLKEIVSLMVEQLKKRL 737

Query: 224 SDRLIDMDTVHRDSIQMVENYG 245
            ++ ID++ +   +I+ +   G
Sbjct: 738 QEQQIDLE-LTDAAIEKLAEEG 758


>gi|220911112|ref|YP_002486421.1| ATPase AAA [Arthrobacter chlorophenolicus A6]
 gi|219857990|gb|ACL38332.1| ATPase AAA-2 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 830

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 508 KMEDELHKRVVGQDEAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I +++++++E   V R
Sbjct: 562 AKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|167463109|ref|ZP_02328198.1| Vesicle-fusing ATPase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381863|ref|ZP_08055817.1| hypothetical protein PL1_0569 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154251|gb|EFX46573.1| hypothetical protein PL1_0569 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 516

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 22/191 (11%)

Query: 22  GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           GQ  AK  +  AL    + +Q+       L  K ILL GP G GKT +++  A    + F
Sbjct: 76  GQDRAKNELIEALDFLIKPEQIERLGIRPL--KGILLTGPPGTGKTLMAKAAAHYTNSVF 133

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK 141
           +    ++F E+ YVG    +I R+L   A    R   + E +E A I  +E  +D + GK
Sbjct: 134 VAASGSEFVEM-YVGVGASRI-RNLFQDA----RNRAQKEDKENAVIFIDE--IDVIGGK 185

Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
                 RE  +   +     D             I +   P    +   N  E+    + 
Sbjct: 186 RDGGQQREYDQTLNQLLTEMD------------GIHSVQTPRILIIAATNRKEMLDSALL 233

Query: 202 SGRKKKIRMSV 212
              +    + V
Sbjct: 234 RPGRFDRHIEV 244


>gi|126733006|ref|ZP_01748765.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
           stellata E-37]
 gi|126706535|gb|EBA05613.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
           stellata E-37]
          Length = 870

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ  A  AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 559 MEENLHRRVVGQNQAVTAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 613 KAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 642


>gi|170733207|ref|YP_001765154.1| ATP-dependent chaperone ClpB [Burkholderia cenocepacia MC0-3]
 gi|169816449|gb|ACA91032.1| ATP-dependent chaperone ClpB [Burkholderia cenocepacia MC0-3]
          Length = 865

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|262172214|ref|ZP_06039892.1| ClpB protein [Vibrio mimicus MB-451]
 gi|261893290|gb|EEY39276.1| ClpB protein [Vibrio mimicus MB-451]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|258624749|ref|ZP_05719683.1| clpB protein [Vibrio mimicus VM603]
 gi|258583036|gb|EEW07851.1| clpB protein [Vibrio mimicus VM603]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|256760910|ref|ZP_05501490.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|307288063|ref|ZP_07568079.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0109]
 gi|256682161|gb|EEU21856.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|306500941|gb|EFM70256.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0109]
 gi|315163552|gb|EFU07569.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1302]
          Length = 831

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|124024074|ref|YP_001018381.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
 gi|123964360|gb|ABM79116.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303]
          Length = 615

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EAAVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|121610528|ref|YP_998335.1| ATPase [Verminephrobacter eiseniae EF01-2]
 gi|121555168|gb|ABM59317.1| ATPase AAA-2 domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 867

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ + L + ++GQ +A  AVA A+R      +  + L D   P    L +GPTGVGKT +
Sbjct: 565 QMEARLHQRVVGQDEAIAAVANAIR------RSRSGLSDPQRPSGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 619 CKALAGFLFDSEDHMVRIDMSEFMEKHSVAR 649


>gi|28190030|gb|AAO32953.1| putative AFG3-like protein 2 [Schistosoma japonicum]
          Length = 469

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      LRN  + + L A +     P+  +L GP G GKT +++  A 
Sbjct: 45  DVAGCEEAKLEIIEFVNFLRNPSKYEALGAKI-----PRGAILKGPPGTGKTLLAKATAG 99

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF+ V  ++F E+ +VG     V  +     D A  I+     D +
Sbjct: 100 EANVPFLSVSGSEFLEM-FVGVGPKRVRDMFASARDKAPCILFIDEIDAI 148


>gi|52424044|gb|AAU47271.1| AAA ATPase-like protein G8 [Trypanosoma cruzi]
          Length = 395

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG  +AK+ V      L N  +  +L A L     PK  LL G  G GKT +++ +A
Sbjct: 87  EDVIGIPEAKQEVQQYVEFLTNPNKFTRLGARL-----PKGRLLTGEPGTGKTLLAKAVA 141

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF     + F E+  G   + V ++  +    A  IV     D +  +A      
Sbjct: 142 GEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARSSAPAIVFIDEIDAIGSRAGKIGGS 201

Query: 127 ----SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                     ++L  L G           A +N ++   K L      D++++IE+ D +
Sbjct: 202 VSSEENRTINQLLAELDGLNTGTDAIIVIAATNFQDNIDKALLREGRFDRKVNIEMPDKA 261

Query: 174 SDISNF 179
           + +  F
Sbjct: 262 ARVDIF 267


>gi|39937493|ref|NP_949769.1| endopeptidase Clp ATP-binding subunit B [Rhodopseudomonas palustris
           CGA009]
 gi|192293280|ref|YP_001993885.1| ATP-dependent chaperone ClpB [Rhodopseudomonas palustris TIE-1]
 gi|54035765|sp|Q6N1H2|CLPB_RHOPA RecName: Full=Chaperone protein ClpB
 gi|39651352|emb|CAE29874.1| endopeptidase Clp: ATP-binding subunit B, clpB [Rhodopseudomonas
           palustris CGA009]
 gi|192287029|gb|ACF03410.1| ATP-dependent chaperone ClpB [Rhodopseudomonas palustris TIE-1]
          Length = 879

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L + ++GQ +A  AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 563 MEEQLGQRVVGQFEAVHAVSTAVR------RARAGLQDPNRPMGSFMFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAEYLFDDETAMVRIDMSEFMEKHSVAR 646


>gi|82596688|ref|XP_726364.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481745|gb|EAA17929.1| afg3-like protein 1 [Plasmodium yoelii yoelii]
          Length = 982

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   +N  + Q L A +     PK  LL G  G GKT +++ +A  
Sbjct: 429 VAGMKQAKEEIMEFVDFLKNPAKYQVLGAKI-----PKGALLCGAPGTGKTLLAKAVAGE 483

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 484 ANVPFFNISGSDFIEV-FVGIGPSRVRELFAQARKHAPSIIFIDEIDAVGRK 534


>gi|325136561|gb|EGC59163.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M0579]
 gi|325201834|gb|ADY97288.1| ATP-dependent chaperone ClpB [Neisseria meningitidis M01-240149]
 gi|325208414|gb|ADZ03866.1| ATP-dependent chaperone ClpB [Neisseria meningitidis NZ-05/33]
          Length = 859

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|310821983|ref|YP_003954341.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395055|gb|ADO72514.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 639

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +   +   ++  +  +L   +     PK +L++G  G GKT ++R +A 
Sbjct: 156 DVAGADECKEELEEIVAFLKDPKKFTKLGGRI-----PKGVLMMGSPGTGKTLLARAVAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 211 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 259


>gi|300722275|ref|YP_003711559.1| ATP-dependent protease [Xenorhabdus nematophila ATCC 19061]
 gi|297628776|emb|CBJ89354.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Xenorhabdus nematophila ATCC
           19061]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 562 MEQELHKRVIGQNEAVDAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|283954681|ref|ZP_06372199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414]
 gi|283793873|gb|EFC32624.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414]
          Length = 645

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|260655863|ref|ZP_05861332.1| ATP-dependent chaperone protein ClpB [Jonquetella anthropi E3_33
           E1]
 gi|260629479|gb|EEX47673.1| ATP-dependent chaperone protein ClpB [Jonquetella anthropi E3_33
           E1]
          Length = 868

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ  A + VA A+       +  A +RD   P  + + +GPTGVGKT ++
Sbjct: 568 LDDELHKGVIGQDQAVQLVADAV------LRARAGIRDPKRPIGSFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LAR         ++++++++ E            GYVG +
Sbjct: 622 RVLARTLFDSENNMVRIDMSEYMEKYSVSRLLGAPPGYVGYD 663


>gi|258620376|ref|ZP_05715414.1| clpB protein [Vibrio mimicus VM573]
 gi|258587255|gb|EEW11966.1| clpB protein [Vibrio mimicus VM573]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|256960597|ref|ZP_05564768.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
 gi|293384400|ref|ZP_06630281.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis R712]
 gi|293389786|ref|ZP_06634227.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis S613]
 gi|312906551|ref|ZP_07765552.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 512]
 gi|312910758|ref|ZP_07769596.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 516]
 gi|256951093|gb|EEU67725.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
 gi|291078248|gb|EFE15612.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis R712]
 gi|291080912|gb|EFE17875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis S613]
 gi|310627420|gb|EFQ10703.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 512]
 gi|311288957|gb|EFQ67513.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis DAPTO 516]
          Length = 831

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|254669474|emb|CBA03362.1| ATP-dependent protease, ATPase subunit [Neisseria meningitidis
           alpha153]
          Length = 859

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|229512401|ref|ZP_04401875.1| ClpB protein [Vibrio cholerae TMA 21]
 gi|229350551|gb|EEO15497.1| ClpB protein [Vibrio cholerae TMA 21]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|219129252|ref|XP_002184808.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403917|gb|EEC43867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 648

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 36/272 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +E VS     + G Q AK  +   +   +N  R  +L A +     PK  LL GP G GK
Sbjct: 161 KEDVSVTFADVAGCQQAKMEIMEFVDFLQNSERFTKLGAKI-----PKGALLCGPPGTGK 215

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV- 122
           T +++ +A  +G PF  +  + F E+ +VG     V  + ++    A  IV     D V 
Sbjct: 216 TLLAKAVAGESGVPFYSISGSDFIEM-FVGVGPSRVRDLFKEARANAPCIVFIDEIDAVG 274

Query: 123 REQA----------SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKE 164
           R++             N   ++L  + G + T        +N  ++  + L      D++
Sbjct: 275 RQRGRGGFSGGNDERENTLNQLLVEMDGFSPTTGVVVLAGTNRADILDQALTRPGRFDRQ 334

Query: 165 IDIEVADTSSDISNFDIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL-- 219
           I ++  D       F++          +   +   + +        I     +       
Sbjct: 335 ITVDRPDLQGRKEIFEVHLRGIKLEGEVKEYAGRLAGLTPGFAGADIANICNEAAIVAAR 394

Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
            + ES  ++D +T     I  +E+  I+  +E
Sbjct: 395 RKAESVTIVDFETATDRIIGGLESNKIMSTEE 426


>gi|215408553|emb|CAR31126.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 162

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 56  IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 112


>gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K     +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 170 DDVAGVEESKTELEEIVEFLKSPQRFTEIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSISGSEFVEL-FVGTGAARV-RDLFEQA 258


>gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K     +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 170 DDVAGVEESKTELEEIVEFLKSPQRFTEIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSISGSEFVEL-FVGTGAARV-RDLFEQA 258


>gi|73667261|ref|YP_303277.1| AAA ATPase, central region:Clp, N terminal [Ehrlichia canis str.
           Jake]
 gi|72394402|gb|AAZ68679.1| AAA ATPase, central region:Clp, N terminal [Ehrlichia canis str.
           Jake]
          Length = 857

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 33/238 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ+ A +AV+ A+     R+             + L +GPTGVGKT + +
Sbjct: 561 MEEEIGKTVIGQESAIKAVSDAV-----RRSRAGVQDANKPLGSFLFLGPTGVGKTELVK 615

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++ ++++F E            GYVG +   +   L +       + 
Sbjct: 616 TLAEFLFCDRSALLRFDMSEFMEKHAVSRLIGAPPGYVGYDQGGM---LTEAVRRRPYQV 672

Query: 118 RRDEVREQASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIE 168
              +  E+A  +    +L  L     T          NT  V    L    + + E D++
Sbjct: 673 ILFDEIEKAHGDIFNILLQVLDEGRLTDNHGKLVDFRNTILVLTSNLGQEILINTEEDVD 732

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226
                  +++          +  L E+   +     K  I   +   +  L +  + +
Sbjct: 733 EDSIKQSMTSVLQHHFRPEFLNRLDEII--IFHKLTKAHIEKIIDVQFSILQKIVAQK 788


>gi|30062370|ref|NP_836541.1| ATP-dependent Clp protease ATP-binding subunit [Shigella flexneri
           2a str. 2457T]
 gi|30040615|gb|AAP16347.1| ATP-binding component of serine protease [Shigella flexneri 2a str.
           2457T]
 gi|281600211|gb|ADA73195.1| ATP-binding component of serine protease [Shigella flexneri
           2002017]
 gi|313650205|gb|EFS14617.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri 2a str. 2457T]
 gi|332759797|gb|EGJ90100.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri 4343-70]
 gi|332760540|gb|EGJ90829.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri 2747-71]
 gi|332768060|gb|EGJ98246.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri 2930-71]
 gi|333006943|gb|EGK26438.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri K-218]
 gi|333020949|gb|EGK40207.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri K-304]
          Length = 758

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +++   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKKLSDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|152964564|ref|YP_001360348.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151359081|gb|ABS02084.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 851

 Score = 60.3 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + +IGQ DA +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 524 MEAELHKRVIGQNDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 577

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F+E   V R
Sbjct: 578 KALAEFLFGEEDALIQLDMSEFSEKHTVSR 607


>gi|323336287|gb|EGA77558.1| Yta12p [Saccharomyces cerevisiae Vin13]
          Length = 826

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 32/268 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +AK  +   + +  +       +  ++ P+  +L GP G GKT +++  A  A
Sbjct: 348 KDVAGCDEAKEEIMEFV-SFLKEPSXYEKMGAKI-PRGAILSGPPGTGKTLLAKATAGEA 405

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ----- 125
           G PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++     
Sbjct: 406 GVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGNFSG 463

Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
           A+   E  +   LV              A +N  ++  K L      D+ I+I+  +   
Sbjct: 464 ANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEG 523

Query: 175 DISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDRLID 229
             + F +       +  I +L    + +        I     +         +++ +L  
Sbjct: 524 RKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNH 583

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVA 257
            +      I  VE    +   E  K+VA
Sbjct: 584 FEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|262401592|ref|ZP_06078158.1| ClpB protein [Vibrio sp. RC586]
 gi|262352009|gb|EEZ01139.1| ClpB protein [Vibrio sp. RC586]
          Length = 857

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|27657214|gb|AAO21098.1| paraplegin [Mus musculus]
          Length = 781

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 20  IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK   R     L++  R  QL A      +PK  LL+GP G GKT +++ +A  
Sbjct: 311 VAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVATE 365

Query: 77  AGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF+ +   +F E+  G     V  + ++    A  IV     D V ++
Sbjct: 366 AQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 416


>gi|254248039|ref|ZP_04941360.1| ATPase with chaperone activity, ATP-binding subunit [Burkholderia
           cenocepacia PC184]
 gi|124872815|gb|EAY64531.1| ATPase with chaperone activity, ATP-binding subunit [Burkholderia
           cenocepacia PC184]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|134295878|ref|YP_001119613.1| ATPase [Burkholderia vietnamiensis G4]
 gi|134139035|gb|ABO54778.1| ATPase AAA-2 domain protein [Burkholderia vietnamiensis G4]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|308187863|ref|YP_003931994.1| Chaperone protein clpB [Pantoea vagans C9-1]
 gi|308058373|gb|ADO10545.1| Chaperone protein clpB [Pantoea vagans C9-1]
          Length = 857

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHGRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|307711228|ref|ZP_07647650.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
 gi|307617190|gb|EFN96368.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK321]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|297201206|ref|ZP_06918603.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|297147830|gb|EDY57793.2| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEEELGKRLIGQGEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHTVSRLV 651


>gi|294790548|ref|ZP_06755706.1| ATP-dependent chaperone protein ClpB [Scardovia inopinata F0304]
 gi|294458445|gb|EFG26798.1| ATP-dependent chaperone protein ClpB [Scardovia inopinata F0304]
          Length = 879

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + ++GQ++A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 578 MEDQLSKRVVGQKEAVRAVSDAV-----RRSRAGISDPDRPTASFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDERAIVRIDMSEYMEKESVSR 661


>gi|229588328|ref|YP_002870447.1| chaperone [Pseudomonas fluorescens SBW25]
 gi|229360194|emb|CAY47051.1| chaperone [Pseudomonas fluorescens SBW25]
          Length = 854

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L + +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT +
Sbjct: 561 KMESLLHQRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|159124705|gb|EDP49823.1| AAA family ATPase, putative [Aspergillus fumigatus A1163]
          Length = 802

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 515 DDIAGLDAAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 572

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 573 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 603


>gi|218768467|ref|YP_002342979.1| ClpB protein [Neisseria meningitidis Z2491]
 gi|54035904|sp|Q9JTP9|CLPB_NEIMA RecName: Full=Chaperone protein ClpB
 gi|121052475|emb|CAM08814.1| ClpB protein [Neisseria meningitidis Z2491]
          Length = 859

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|15677326|ref|NP_274481.1| clpB protein [Neisseria meningitidis MC58]
 gi|54035905|sp|Q9JYQ8|CLPB_NEIMB RecName: Full=Chaperone protein ClpB
 gi|7226713|gb|AAF41829.1| clpB protein [Neisseria meningitidis MC58]
 gi|316984618|gb|EFV63583.1| ATP-dependent chaperone ClpB [Neisseria meningitidis H44/76]
 gi|325140588|gb|EGC63108.1| ATP-dependent chaperone ClpB [Neisseria meningitidis CU385]
 gi|325199917|gb|ADY95372.1| ATP-dependent chaperone ClpB [Neisseria meningitidis H44/76]
          Length = 859

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|283956514|ref|ZP_06373994.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792234|gb|EFC31023.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 645

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 267

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 268 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 321

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 322 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 365


>gi|269926455|ref|YP_003323078.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790115|gb|ACZ42256.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 820

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + I+GQ +A   VA A+R      +    ++D   P  + + +GPTGVGKT +
Sbjct: 504 KMEEELHKRIVGQDEAITTVARAVR------RARTGMKDPRRPVGSFIFLGPTGVGKTEL 557

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV---- 122
           ++ LA          IK+++++F E   V R V      +       + E+ R +     
Sbjct: 558 AKTLAEFMFGSEDALIKIDMSEFMERHAVARLVGAPPGYVGYEEGGQLTEAVRRKSFSVI 617

Query: 123 ----REQASINAEERILDALV--GKTATSNTREVFRKKL 155
                E+A   A   +L  L     T     R  FR  +
Sbjct: 618 LLDEIEKAHPEAFNMLLQILEDGHLTDAKGRRVNFRNTI 656



 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 51/295 (17%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D    + +F   G   VG   L++  ++ M       I++ + +    + R    RL+
Sbjct: 534 MKDPRRPVGSFIFLGPTGVGKTELAKTLAEFMFGSEDALIKIDMSE---FMERHAVARLV 590

Query: 229 ---------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREG 270
                    +      ++++  +++ ++ LDE +K         +   + G+        
Sbjct: 591 GAPPGYVGYEEGGQLTEAVRR-KSFSVILLDEIEKAHPEAFNMLLQILEDGHLTDAKGRR 649

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA--------------DLLPEI 316
           V      ++  S++  +  + +T     I +      + A                 PE 
Sbjct: 650 VNFRNTIIIMTSNIGAEMINRDTTVGFTIRTDEAKAQQRAYENMRDKVLSELKKHFRPEF 709

Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
             R    V   SL+    R I+       I + +E +  + I L  TE++++ LA     
Sbjct: 710 LNRIDAVVVFHSLSPEHIRKIV----DIQIDRVRERLAEQQIQLKLTEEALNTLA----- 760

Query: 377 LNSTVGDIGARRLQ----TVMERVLEDISFSASDLQEKTVVIDA--EYVRLHIGD 425
                   GAR L+    T +E  L +           TVV+DA  + + LH+ +
Sbjct: 761 RRGYDQTYGARPLRRLIQTEVEDKLAEGVLEGKFQPGSTVVVDAHDDEIVLHLEE 815


>gi|224282385|ref|ZP_03645707.1| ATP-binding subunit of Clp protease [Bifidobacterium bifidum NCIMB
           41171]
          Length = 887

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 571 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 625

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 626 ALADFLFDDEKAMVRIDMSEYMEKASVSR 654


>gi|254468710|ref|ZP_05082116.1| ATP-dependent chaperone ClpB [beta proteobacterium KB13]
 gi|207087520|gb|EDZ64803.1| ATP-dependent chaperone ClpB [beta proteobacterium KB13]
          Length = 863

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + ++GQ +A ++++ A+R      +  + L DE  P  + L +GPTGVGKT +S
Sbjct: 563 MESVLHQRVVGQDEAVKSISNAIR------RSRSGLSDEGRPYGSFLFLGPTGVGKTELS 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 617 KSLASFLFDSEEHLIRIDMSEFMEKHSVAR 646


>gi|146307416|ref|YP_001187881.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           mendocina ymp]
 gi|145575617|gb|ABP85149.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           mendocina ymp]
          Length = 756

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  ++A A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLATAIK-----LSRAGLKAPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|116070848|ref|ZP_01468117.1| ATPase [Synechococcus sp. BL107]
 gi|116066253|gb|EAU72010.1| ATPase [Synechococcus sp. BL107]
          Length = 862

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L R +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLETDLHRRVIGQDQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           S+ LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 620 SKALANRLFDSDEAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRRR 674


>gi|56479755|ref|NP_706768.2| ATP-dependent Clp protease ATP-binding subunit [Shigella flexneri
           2a str. 301]
 gi|56383306|gb|AAN42475.2| ATP-binding component of serine protease [Shigella flexneri 2a str.
           301]
          Length = 758

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + +++   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKKLSDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|315453661|ref|YP_004073931.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC
           49179]
 gi|3122116|sp|O32617|FTSH_HELFC RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2660540|emb|CAA05102.1| cell cycle protein [Helicobacter felis]
 gi|315132713|emb|CBY83341.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC
           49179]
          Length = 638

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 11/194 (5%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G ++AK  V   + +  +     A L  ++ PK +LLVGP G GKT +++ +A  A  P
Sbjct: 179 AGNEEAKEEVVEIV-DFLKYPDRYASLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEASVP 236

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALV 139
           F  +  + F E+ +VG    ++ RDL D+A          DE+       A      A  
Sbjct: 237 FFSMGGSSFIEM-FVGLGASRV-RDLFDIAKKEAPSIIFIDEIDAIGKSRA------AGG 288

Query: 140 GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             +      +   + L + +    E    +   +++      P     G  +   L  K 
Sbjct: 289 MISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKP 348

Query: 200 MGSGRKKKIRMSVQ 213
              GR + +++ ++
Sbjct: 349 DFKGRVEILKVHIK 362


>gi|107028974|ref|YP_626069.1| ATPase AAA-2 [Burkholderia cenocepacia AU 1054]
 gi|116689868|ref|YP_835491.1| ATPase [Burkholderia cenocepacia HI2424]
 gi|105898138|gb|ABF81096.1| ATPase AAA-2 [Burkholderia cenocepacia AU 1054]
 gi|116647957|gb|ABK08598.1| ATPase AAA-2 domain protein [Burkholderia cenocepacia HI2424]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|322704988|gb|EFY96577.1| matrix AAA protease MAP-1 [Metarhizium anisopliae ARSEF 23]
          Length = 905

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 415 DVAGLEEAKTEIMEFV-SFLKQPEKFEKLGAKI-PRGAILAGPPGTGKTLLAKATAGESG 472

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS------- 127
            PF  V  ++F E+ +VG     V  +  +    A  I+     D + R +         
Sbjct: 473 VPFFSVSGSEFVEM-FVGVGPSRVRDLFAEGRKNAPCIIFIDEIDAIGRARMESGRGFGG 531

Query: 128 ----INAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    +IL  + G          A +N  ++  K L      D+ I I+    S  
Sbjct: 532 NDEREATLNQILTEMDGFNTREQVVVLAGTNRADILDKALMRPGRFDRHIFIDRPTMSGR 591

Query: 176 ISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDRLIDM 230
              F +       +     L    + +        I   V +          E  ++I  
Sbjct: 592 KEIFKVYLKKIVTNEDQDFLVGRLATLTPGFSGADISNVVNEAALIAARGNAEEVKMIHF 651

Query: 231 DTVHRDSIQMVENYGIVF 248
           +      I  +E   +V 
Sbjct: 652 ERAIERVIGGLERKSLVL 669


>gi|261212183|ref|ZP_05926469.1| ClpB protein [Vibrio sp. RC341]
 gi|260838791|gb|EEX65442.1| ClpB protein [Vibrio sp. RC341]
          Length = 857

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|255970546|ref|ZP_05421132.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
 gi|256617980|ref|ZP_05474826.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
 gi|256958535|ref|ZP_05562706.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
 gi|257078149|ref|ZP_05572510.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
 gi|257091493|ref|ZP_05585854.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257420295|ref|ZP_05597285.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|294780724|ref|ZP_06746084.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis PC1.1]
 gi|307270010|ref|ZP_07551335.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4248]
 gi|307274514|ref|ZP_07555695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2134]
 gi|312899758|ref|ZP_07759078.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0470]
 gi|312905574|ref|ZP_07764688.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0635]
 gi|312953740|ref|ZP_07772573.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0102]
 gi|255961564|gb|EET94040.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
 gi|256597507|gb|EEU16683.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
 gi|256949031|gb|EEU65663.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
 gi|256986179|gb|EEU73481.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
 gi|257000305|gb|EEU86825.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257162119|gb|EEU92079.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|294452164|gb|EFG20606.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis PC1.1]
 gi|306508786|gb|EFM77875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2134]
 gi|306513675|gb|EFM82282.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4248]
 gi|310628344|gb|EFQ11627.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0102]
 gi|310631303|gb|EFQ14586.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0635]
 gi|311293110|gb|EFQ71666.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0470]
 gi|315035218|gb|EFT47150.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0027]
 gi|315148386|gb|EFT92402.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX4244]
 gi|315152751|gb|EFT96767.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0031]
 gi|315154576|gb|EFT98592.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0043]
 gi|315158946|gb|EFU02963.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0312]
 gi|315162279|gb|EFU06296.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0645]
 gi|315171228|gb|EFU15245.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1342]
 gi|315172856|gb|EFU16873.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1346]
 gi|315576520|gb|EFU88711.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0630]
 gi|327536383|gb|AEA95217.1| ATPase/chaperone ClpC, probable specificity factor for ClpP
           protease [Enterococcus faecalis OG1RF]
          Length = 831

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|240142554|ref|YP_002967067.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
 gi|240012501|gb|ACS43726.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
          Length = 964

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   +IGQ++A RAVA A+     R                L +GPTGVGKT ++
Sbjct: 612 KLEDKLHERVIGQEEAIRAVADAV-----RLARAGLREGRGPTATFLFLGPTGVGKTELA 666

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +        I+++++++ E   V R V
Sbjct: 667 KTLAEVIFGDQDAIIRIDMSEYGERHSVARLV 698


>gi|225684059|gb|EEH22343.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb03]
          Length = 920

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 430 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 487

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 488 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 517


>gi|221640905|ref|YP_002527167.1| ATPase AAA-2 domain-containing protein [Rhodobacter sphaeroides
           KD131]
 gi|221161686|gb|ACM02666.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides KD131]
          Length = 870

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 26/132 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R +IGQ+ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 558 KMEEELGRRVIGQRAALRAVANAVR------RARAGLNDERRPLGSFLFLGPTGVGKTEL 611

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ +A          +++++++F E            GYVG +      E + R    V 
Sbjct: 612 TKAVAEYLFDDDQAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVV 671

Query: 111 INIVRESRRDEV 122
           +    E    EV
Sbjct: 672 LFDEVEKAHPEV 683


>gi|148906545|gb|ABR16425.1| unknown [Picea sitchensis]
          Length = 1036

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 12/218 (5%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG--YVGRNVEQIIRD 105
           +   +P+ ILL GP G GKT ++R +AR  G PF+     +F+E G       + ++   
Sbjct: 547 KRVKLPRGILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESGPRSGSEKIFELFFT 606

Query: 106 LVDVAINIVRESRRDE------VREQASINAEERILDALVGKTATSN-TREVFRKKLRDG 158
               A + V     D         ++   +  E++L  L G    +N  R   R+ +   
Sbjct: 607 ARANAPSFVFIDEIDALAGKNVNDDRERTSTFEQLLSQLDGDVDDTNVERYSLRQAVILI 666

Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
             +++  +++         + ++  G   G  +   +FS      R  K     +  +  
Sbjct: 667 CATNRPDELDERLLQPGRIDRELYIGLP-GEKDRVSIFSVHSQGRRLAKDVDFKKLAFRT 725

Query: 219 LMRDESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
           +    +D   L++   +        E +    +D  DK
Sbjct: 726 IGYSGADIRNLVNESGIMAVRKGHDEIFQQDIIDVLDK 763


>gi|206560283|ref|YP_002231047.1| ClpB heat-shock protein [Burkholderia cenocepacia J2315]
 gi|198036324|emb|CAR52220.1| ClpB heat-shock protein [Burkholderia cenocepacia J2315]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|77464984|ref|YP_354488.1| chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
 gi|77389402|gb|ABA80587.1| Chaperone ClpB [Rhodobacter sphaeroides 2.4.1]
          Length = 870

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 26/132 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R +IGQ+ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 558 KMEEELGRRVIGQRAALRAVANAVR------RARAGLNDERRPLGSFLFLGPTGVGKTEL 611

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ +A          +++++++F E            GYVG +      E + R    V 
Sbjct: 612 TKAVAEYLFDDDQAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVV 671

Query: 111 INIVRESRRDEV 122
           +    E    EV
Sbjct: 672 LFDEVEKAHPEV 683


>gi|29377725|ref|NP_816879.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Enterococcus
           faecalis V583]
 gi|227517135|ref|ZP_03947184.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX0104]
 gi|227555222|ref|ZP_03985269.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis HH22]
 gi|257088425|ref|ZP_05582786.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
 gi|257418098|ref|ZP_05595092.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
 gi|29345193|gb|AAO82949.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Enterococcus
           faecalis V583]
 gi|227075415|gb|EEI13378.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX0104]
 gi|227175651|gb|EEI56623.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis HH22]
 gi|256996455|gb|EEU83757.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
 gi|257159926|gb|EEU89886.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
 gi|315028021|gb|EFT39953.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX2137]
 gi|315575413|gb|EFU87604.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0309B]
 gi|315580852|gb|EFU93043.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0309A]
          Length = 831

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|88854791|ref|ZP_01129457.1| cell division protein [marine actinobacterium PHSC20C1]
 gi|88815952|gb|EAR25808.1| cell division protein [marine actinobacterium PHSC20C1]
          Length = 667

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L+   +   + A +     PK +LL GP G GKT +++  A 
Sbjct: 164 DVAGADEAIEELEEIKDFLKEPAKFLAVGARI-----PKGVLLYGPPGTGKTLLAKATAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 219 EAGVPFYTISGSDFVEM-FVGVGASRV-RDLFEQA 251


>gi|126460853|ref|YP_001041967.1| ATPase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102517|gb|ABN75195.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 870

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 26/132 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R +IGQ+ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 558 KMEEELGRRVIGQRAALRAVANAVR------RARAGLNDERRPLGSFLFLGPTGVGKTEL 611

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ +A          +++++++F E            GYVG +      E + R    V 
Sbjct: 612 TKAVAEYLFDDDQAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVV 671

Query: 111 INIVRESRRDEV 122
           +    E    EV
Sbjct: 672 LFDEVEKAHPEV 683


>gi|70992571|ref|XP_751134.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66848767|gb|EAL89096.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
          Length = 802

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 515 DDIAGLDAAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 572

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 573 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 603


>gi|323479192|gb|ADX78631.1| clpC ATPase [Enterococcus faecalis 62]
          Length = 831

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|300742477|ref|ZP_07072498.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Rothia
           dentocariosa M567]
 gi|300381662|gb|EFJ78224.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Rothia
           dentocariosa M567]
          Length = 850

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 121/293 (41%), Gaps = 37/293 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 510 KMEDELHKRVIGQDNAIKALSRAIR------RTRAGLKDPRRPGGSFIFAGPTGVGKTEL 563

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA          I ++++++ E            GYVG +      E++ R    V 
Sbjct: 564 AKALAEFLFGDEDALITLDMSEYQEKHTVSRLFGAPPGYVGYDEGGQLTEKVRRKPFSVV 623

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    ++        E+ R+ D+        NT  +    L   +++ +   + V
Sbjct: 624 LFDEVEKAHTDLFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGSRDVNRR---VPV 680

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              + D  + D     +  + NL E F     +     I       +P+L  +E  +++D
Sbjct: 681 GFQAMDHGDADYERMQARVMENLKEHFRPEFLNRVDDII------VFPQLSENEILQIVD 734

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           +  V R + ++ +    + L +  K++    G    +    ++R++   +E +
Sbjct: 735 L-FVGRLAKRLADQEMSIELTDAAKVLMASKGYDPAMGARPLRREMQRNIEDA 786


>gi|300088291|ref|YP_003758813.1| ATPase AAA-2 domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528024|gb|ADJ26492.1| ATPase AAA-2 domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 843

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   IIGQ++A   +A A+R      +  A L+D   P  N + +GPTGVGKT ++
Sbjct: 508 MEEVLHERIIGQEEAINTIAKAVR------RARAGLKDPSRPIGNFIFLGPTGVGKTELA 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA+         +++++++F E            GYVG +
Sbjct: 562 RALAQFMFGSEDSMVRIDMSEFMEKFAVSRLVGAPPGYVGYD 603



 Score = 37.6 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 13/107 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   SL +   R I+     ++  Q    +K + I ++ TE + D     
Sbjct: 711 PEFLNRVDSTVVFHSLTRDQIREIVDLQLVSITTQ----LKEKNIGIEVTESAKDV---- 762

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS----ASDLQEKTVVIDA 416
            +         GAR L+ V++ +LED               TVV+DA
Sbjct: 763 -LGRKGYDEVYGARPLRRVIQNLLEDRLSEDLLRGDYGPGDTVVVDA 808


>gi|291613433|ref|YP_003523590.1| ATP-dependent Clp protease ATP-binding protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583545|gb|ADE11203.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sideroxydans
           lithotrophicus ES-1]
          Length = 753

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+A A++              +    + L  GPTGVGKT +
Sbjct: 451 KNLDRDLKATVFGQDKAIDALARAIK-----MSRSGLGNPQKPIGSFLFSGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G P  + +++++ E            GYVG +   ++ + +    + 
Sbjct: 506 ARQLAYSMGMPLHRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHC 560


>gi|226293453|gb|EEH48873.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 920

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 430 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 487

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 488 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 517


>gi|295664839|ref|XP_002792971.1| AAA ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226278492|gb|EEH34058.1| AAA ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 920

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 430 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 487

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 488 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 517


>gi|158340876|ref|YP_001522044.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|310943110|sp|A8ZNZ4|FTSH_ACAM1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158311117|gb|ABW32730.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 655

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  +      L +  +  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 176 DDVAGVEEAKTELLEIVDFLAHADKYTRLGAKI-----PKGVLLVGPPGTGKTLLAKAIA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 231 GEAKVPFFSISGSEFIEL-FVGIGAARV-RDLFEQA 264


>gi|149183498|ref|ZP_01861926.1| ClpC [Bacillus sp. SG-1]
 gi|148848792|gb|EDL63014.1| ClpC [Bacillus sp. SG-1]
          Length = 813

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 501 KLEEILHSRVIGQDEAVKAVSKAVR------RARAGLKDPKRPIGSFVFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R LA          I+++++++ E     R V      +             ++VR + 
Sbjct: 555 ARALAESMFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYV----GYEEGGQLTEKVRRKP 610

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                  +LD +  + A  +   +  + L DG ++D +      D  + +       GA 
Sbjct: 611 YSVV---LLDEI--EKAHPDVFNILLQVLEDGRLTDSK--GRTVDFRNTVLIMTSNVGAE 663

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
               N    F+   G    K ++  V +      R E    ID 
Sbjct: 664 SLKKNKHVGFNIQDGEQDYKDMKGKVMEELKRAFRPEFLNRIDE 707


>gi|116070597|ref|ZP_01467866.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116066002|gb|EAU71759.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 599

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + R   +
Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEM-FVGVGASRVRDLFRQAKE 243

Query: 109 VAINIVRESRRDEV 122
            A  IV     D V
Sbjct: 244 KAPCIVFIDEIDAV 257


>gi|254252226|ref|ZP_04945544.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
 gi|124894835|gb|EAY68715.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|71030708|ref|XP_764996.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351952|gb|EAN32713.1| hypothetical protein TP02_0430 [Theileria parva]
          Length = 881

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  ++  +   + R     +     +PK +LL GP G GKT +++ +A  A 
Sbjct: 328 DVAGMREAKYEISEFVD--FLRSPKTYESYGAKIPKGVLLCGPPGTGKTLLAKAVAGEAN 385

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 386 VPFYSMSGSDFIEV-FVGIGPSRV-RDLFDKA 415


>gi|302388370|ref|YP_003824192.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
 gi|302198998|gb|ADL06569.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum
           WM1]
          Length = 606

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           V   L+N  +   + A +     PK ILLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 175 VVDFLKNPQKYTSVGARI-----PKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 229

Query: 90  TEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 230 VEM-FVGVGASRV-RDLFEEGKKHAPCIIFIDEIDAV 264


>gi|258593181|emb|CBE69514.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 642

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A 
Sbjct: 194 IPRGLLLVGPPGCGKTLLAKAVAGEAGVPFFSLSGSEFVEV-FVGVGASRV-RDLFEQAK 251

Query: 112 NI 113
             
Sbjct: 252 KN 253


>gi|237735419|ref|ZP_04565900.1| cell division protein ftsH [Mollicutes bacterium D7]
 gi|229381164|gb|EEO31255.1| cell division protein ftsH [Coprobacillus sp. D7]
          Length = 654

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ-------ASINAEERILDALVGKT- 142
           +VG     V  + +     A  I+     D V  Q            E+ +   LV    
Sbjct: 242 FVGVGAGRVRDMFKKAKQTAPCIIFIDEIDAVGRQRGTGMGGGHDEREQTLNQLLVEMDG 301

Query: 143 ----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                     A +N  +V    L      D++I +   D ++      +         ++
Sbjct: 302 FSGNEGIIILAATNRADVLDPALLRPGRFDRQIQVANPDKNARTEILKVHARNKKFAPDV 361

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     G       +V      L   E  ++I MD +  +++  V     
Sbjct: 362 DFSNIAQRTPGFSGAELENVLNEAALLAVREDHKVISMDDI-DEAVDRVMGGPA 414


>gi|242785355|ref|XP_002480577.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218720724|gb|EED20143.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 902

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 423 DVAGMDEAKMEIMEFV-SFLKEAEKFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESG 480

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 481 VPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 510


>gi|167766277|ref|ZP_02438330.1| hypothetical protein CLOSS21_00781 [Clostridium sp. SS2/1]
 gi|167711996|gb|EDS22575.1| hypothetical protein CLOSS21_00781 [Clostridium sp. SS2/1]
 gi|291559090|emb|CBL37890.1| ATPases with chaperone activity, ATP-binding subunit
           [butyrate-producing bacterium SSC/2]
          Length = 819

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 29/249 (11%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL +++IGQ +A  AVA A+    +R ++     +     + L +GPTGVGKT +
Sbjct: 508 RHLEKELHKHVIGQDEAVNAVAKAV----KRSRVGLKSPN-RPIGSFLFLGPTGVGKTEL 562

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD------ 120
           S+ LA+         I+V+++++ E   V + +      +       + E  R       
Sbjct: 563 SKTLAKALFGREEDLIRVDMSEYMEKHSVSKIIGSPPGYVGFGEGGQLSEQIRRHPYSVL 622

Query: 121 --EVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             +  E+A  +    +L  L  G    SN R+V  K       S+   +  +A      S
Sbjct: 623 LFDEIEKAHPDVFNILLQVLDDGHITDSNGRKVDFKNTVIIMTSNAGANRIIAPKHLGFS 682

Query: 178 NFDI------PGGASVGILNLSELFSKVMGSGRKKKI------RMSVQKCYPELMRDESD 225
             D              +  + ++F     +   + I      +  V+K     M +   
Sbjct: 683 MDDTDKAKTHERMKKGVMEEVKQIFRPEFLNRIDETIVFAVLTKEEVKKIAKLFMDELRA 742

Query: 226 RLIDMDTVH 234
           RL+    + 
Sbjct: 743 RLLSEHQIT 751


>gi|58698417|ref|ZP_00373328.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630896|ref|YP_002727687.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia sp.
           wRi]
 gi|58535072|gb|EAL59160.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592877|gb|ACN95896.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia sp.
           wRi]
          Length = 768

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 18/101 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA   G   I+ +++++ E            GYVG +
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISRMIGSPPGYVGYD 564


>gi|332559883|ref|ZP_08414205.1| ATPase [Rhodobacter sphaeroides WS8N]
 gi|332277595|gb|EGJ22910.1| ATPase [Rhodobacter sphaeroides WS8N]
          Length = 870

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 26/132 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R +IGQ+ A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 558 KMEEELGRRVIGQRAALRAVANAVR------RARAGLNDERRPLGSFLFLGPTGVGKTEL 611

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ +A          +++++++F E            GYVG +      E + R    V 
Sbjct: 612 TKAVAEYLFDDDQAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVV 671

Query: 111 INIVRESRRDEV 122
           +    E    EV
Sbjct: 672 LFDEVEKAHPEV 683


>gi|330924705|ref|XP_003300745.1| hypothetical protein PTT_12085 [Pyrenophora teres f. teres 0-1]
 gi|311324957|gb|EFQ91155.1| hypothetical protein PTT_12085 [Pyrenophora teres f. teres 0-1]
          Length = 881

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +   +   ++  R Q+L A +     P+  +L G  G GKT +++  A 
Sbjct: 390 DVAGMDEAKQEIMEFVSFLKDPSRFQKLGAKI-----PRGAILSGSPGTGKTLLAKATAG 444

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 445 ESGVPFFSVSGSEFVEM-FVGVGASRV-RDLFANA 477


>gi|296436397|gb|ADH18571.1| ATP-dependent zinc protease [Chlamydia trachomatis G/9768]
 gi|296438256|gb|ADH20417.1| ATP-dependent zinc protease [Chlamydia trachomatis G/11074]
 gi|297140757|gb|ADH97515.1| ATP-dependent zinc protease [Chlamydia trachomatis G/9301]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|257083072|ref|ZP_05577433.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
 gi|256991102|gb|EEU78404.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
          Length = 831

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|255974129|ref|ZP_05424715.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T2]
 gi|307283899|ref|ZP_07564072.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0860]
 gi|255967001|gb|EET97623.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T2]
 gi|306503549|gb|EFM72796.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0860]
 gi|315167028|gb|EFU11045.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1341]
          Length = 831

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
 gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
          Length = 808

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A    + +   L +  R   L A +     P+ +LL GP G GKT ++R +A
Sbjct: 167 EDVAGADEAVDELQEIKDFLEDPTRYHDLGAKI-----PRGVLLYGPPGTGKTLLARAVA 221

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 GEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|269926504|ref|YP_003323127.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790164|gb|ACZ42305.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 815

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A +AV+ A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 504 MEEALHKRVIGQDQAIQAVSDAIR------RSRAGLSDPNRPIGSFIFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           R LA          ++++++++ E            GYVG +
Sbjct: 558 RALAEFLFDDREAMVRIDMSEYGERHTVSRLIGSPPGYVGYD 599


>gi|189235434|ref|XP_001813433.1| PREDICTED: similar to paraplegin [Tribolium castaneum]
 gi|270004289|gb|EFA00737.1| hypothetical protein TcasGA2_TC003619 [Tribolium castaneum]
          Length = 777

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            + G ++AK+ V   +     +R ++   L  ++ PK  LL+GP G GKT +++ +A  A
Sbjct: 298 DVAGLREAKQEVMEFVDYL--KRPEIYKSLGAKV-PKGALLLGPPGCGKTLLAKAVATEA 354

Query: 78  GAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             PF+ +  ++F E+  G     V  + ++    A  I+     D V  +
Sbjct: 355 NVPFLSMNGSEFIEMIGGLGAARVRDLFKEARKRAPCIIYIDEIDAVGRK 404


>gi|115378592|ref|ZP_01465746.1| cell division protein FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115364420|gb|EAU63501.1| cell division protein FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 658

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +   +   ++  +  +L   +     PK +L++G  G GKT ++R +A 
Sbjct: 175 DVAGADECKEELEEIVAFLKDPKKFTKLGGRI-----PKGVLMMGSPGTGKTLLARAVAG 229

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 230 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 278


>gi|194334584|ref|YP_002016444.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
 gi|194312402|gb|ACF46797.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM
           271]
          Length = 660

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A   +   +    +  + Q++   +     PK +LL+GP G GKT +++ +A
Sbjct: 211 EDVAGVDEAIEELKETVEFLMSPEKFQKIGGKI-----PKGVLLLGPPGTGKTLLAKAIA 265

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 266 GEAKVPFFSISGADFVEM-FVGVGAARV-RDLFETAKKN 302


>gi|325474941|gb|EGC78127.1| chaperone ClpB [Treponema denticola F0402]
          Length = 694

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 400 QLEKVLQARVVGQDEAVRVVSDAIR------RNKAGLSDMNRPLGSFLCIGPTGVGKTEL 453

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA           +++++++ E   V R
Sbjct: 454 ARTLADFLFNDEKALTRIDMSEYMEKHSVSR 484


>gi|317143566|ref|XP_001819556.2| AAA family ATPase [Aspergillus oryzae RIB40]
          Length = 769

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 495 DDIAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 552

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 553 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 583


>gi|311063724|ref|YP_003970449.1| ClpB protein [Bifidobacterium bifidum PRL2010]
 gi|310866043|gb|ADP35412.1| ClpB protein [Bifidobacterium bifidum PRL2010]
          Length = 887

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 571 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 625

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 626 ALADFLFDDEKAMVRIDMSEYMEKASVSR 654


>gi|307705919|ref|ZP_07642757.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
 gi|307620580|gb|EFN99678.1| ATP-dependent metallopeptidase HflB [Streptococcus mitis SK597]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDASD 419


>gi|297748969|gb|ADI51515.1| FtsH [Chlamydia trachomatis D-EC]
 gi|297749849|gb|ADI52527.1| FtsH [Chlamydia trachomatis D-LC]
          Length = 921

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 414 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 468

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 469 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 522


>gi|294495078|ref|YP_003541571.1| ATP-dependent chaperone ClpB [Methanohalophilus mahii DSM 5219]
 gi|292666077|gb|ADE35926.1| ATP-dependent chaperone ClpB [Methanohalophilus mahii DSM 5219]
          Length = 869

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 566 LEDRLHERVIGQDEAVKAVSDAV------IRAHAGIKDPRRPIGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 620 KALATELFDSEDHMIRIDMSEYMEKHTVAR 649


>gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
 gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|262066539|ref|ZP_06026151.1| cell division protein FtsH [Fusobacterium periodonticum ATCC 33693]
 gi|291379773|gb|EFE87291.1| cell division protein FtsH [Fusobacterium periodonticum ATCC 33693]
          Length = 723

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +I       + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GK
Sbjct: 274 EDISDVTFADVAGIDEAKQELKEVVDFLKEPEKFKKIGAKI-----PKGVLLLGEPGTGK 328

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V 
Sbjct: 329 TLLAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFGKARKNAPCIVFIDEIDAVG 387

Query: 124 EQ 125
            +
Sbjct: 388 RK 389


>gi|262163882|ref|ZP_06031621.1| ClpB protein [Vibrio mimicus VM223]
 gi|262027410|gb|EEY46076.1| ClpB protein [Vibrio mimicus VM223]
          Length = 823

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 528 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 581

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 582 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 613


>gi|262041015|ref|ZP_06014236.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041650|gb|EEW42700.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 755

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           + + +   L   + GQ  A  A+  A++         A L  E  P  + L  GPTGVGK
Sbjct: 445 TLKNLGDRLKMLVFGQDKAIEALTEAIK------MTRAGLGHEHKPVGSFLFAGPTGVGK 498

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           T ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 499 TEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 555


>gi|255349246|ref|ZP_05381253.1| Cell division protein [Chlamydia trachomatis 70]
 gi|255503783|ref|ZP_05382173.1| Cell division protein [Chlamydia trachomatis 70s]
 gi|255507464|ref|ZP_05383103.1| Cell division protein [Chlamydia trachomatis D(s)2923]
 gi|289525887|emb|CBJ15369.1| Cell division protein [Chlamydia trachomatis Sweden2]
 gi|296435473|gb|ADH17651.1| Cell division protein [Chlamydia trachomatis E/150]
 gi|296439190|gb|ADH21343.1| Cell division protein [Chlamydia trachomatis E/11023]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|224070955|ref|XP_002303302.1| predicted protein [Populus trichocarpa]
 gi|222840734|gb|EEE78281.1| predicted protein [Populus trichocarpa]
          Length = 844

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 408 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 459

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 460 GASRVRALYQEAKENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVS 512

Query: 155 LRDGEISDKEIDIEVADTSSDI-SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           L   E   + I I   +    +      PG     I          M   +    +  + 
Sbjct: 513 LDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA 572

Query: 214 K 214
            
Sbjct: 573 D 573


>gi|221632469|ref|YP_002521690.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
 gi|221157168|gb|ACM06295.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
          Length = 870

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEERLHERVVGQDEAVRAVSNAIR------RARAGLQDPNRPLGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 620 RALAEFLFDDERAMVRIDMSEYQERHTVSR 649



 Score = 36.8 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 26/201 (12%)

Query: 235 RDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            ++++    Y +V  DE +K         +   D G         V      ++  S++ 
Sbjct: 667 TEAVRR-RPYSVVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 725

Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345
           ++Y      H    A      +  A   PE   R    +  + L +     I+       
Sbjct: 726 SEYIQALLPHREEEAYERVMQAVRAHFRPEFLNRIDEIIMFRPLTREQLSQIV----DIQ 781

Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA- 404
           + Q ++ +K   I L  T  + + LA+   +        GAR L+ V++R L D   +  
Sbjct: 782 LRQVRQRLKQRNITLQVTLRAKEWLAERGYD-----PVYGARPLKRVIQRELLDPLANML 836

Query: 405 ---SDLQEKTVVIDAEYVRLH 422
                   +TV++D   V  H
Sbjct: 837 LRGEVRDGETVLVD---VDEH 854


>gi|170703405|ref|ZP_02894181.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria IOP40-10]
 gi|170131681|gb|EDT00233.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria IOP40-10]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|119472663|ref|XP_001258398.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119406550|gb|EAW16501.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 805

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 518 DDIAGLDAAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 575

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 576 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 606


>gi|108759619|ref|YP_632532.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
 gi|123374355|sp|Q1D491|FTSH_MYXXD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|108463499|gb|ABF88684.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622]
          Length = 638

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  + K  +   +   ++  +  +L   +     PK +L++G  G GKT ++R +A 
Sbjct: 156 DVAGADECKEELEEIVAFLKDPKKFTKLGGRI-----PKGVLMMGSPGTGKTLLARAVAG 210

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 211 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 259


>gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30]
 gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30]
 gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|15605576|ref|NP_220362.1| ATP-dependent zinc protease [Chlamydia trachomatis D/UW-3/CX]
 gi|3329313|gb|AAC68438.1| ATP-dependent zinc protease [Chlamydia trachomatis D/UW-3/CX]
 gi|296437328|gb|ADH19498.1| ATP-dependent zinc protease [Chlamydia trachomatis G/11222]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|33864065|ref|NP_895625.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
 gi|33635649|emb|CAE21973.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313]
          Length = 615

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 161 DVAGIEGAKLELTEVVDFLKNPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 216 EAAVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 251


>gi|124266742|ref|YP_001020746.1| putative ATP-dependent protease (heat shock protein) [Methylibium
           petroleiphilum PM1]
 gi|124259517|gb|ABM94511.1| putative ATP-dependent protease (heat shock protein) [Methylibium
           petroleiphilum PM1]
          Length = 867

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A RAV+ ++R      +  A L D   P    L +GPTGVGKT +
Sbjct: 565 DMEVKLHERVVGQDEAIRAVSDSIR------RSRAGLSDPNRPTGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 619 CKALAGFLFDTEEAMIRIDMSEFMEKHSVAR 649


>gi|309799286|ref|ZP_07693534.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
 gi|308117131|gb|EFO54559.1| putative Cell division protein FtsH [Streptococcus infantis SK1302]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 291


>gi|311112373|ref|YP_003983595.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rothia
           dentocariosa ATCC 17931]
 gi|310943867|gb|ADP40161.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rothia
           dentocariosa ATCC 17931]
          Length = 850

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 121/293 (41%), Gaps = 37/293 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 510 KMEDELHKRVIGQDNAIKALSRAIR------RTRAGLKDPRRPGGSFIFAGPTGVGKTEL 563

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA          I ++++++ E            GYVG +      E++ R    V 
Sbjct: 564 AKALAEFLFGDEDALITLDMSEYQEKHTVSRLFGAPPGYVGYDEGGQLTEKVRRKPFSVV 623

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    ++        E+ R+ D+        NT  +    L   +++ +   + V
Sbjct: 624 LFDEVEKAHTDLFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGSRDVNRR---VPV 680

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
              + D  + D     +  + NL E F     +     I       +P+L  +E  +++D
Sbjct: 681 GFQAMDHGDADYERMQARVMENLKEHFRPEFLNRVDDII------VFPQLSENEILQIVD 734

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282
           +  V R + ++ +    + L +  K++    G    +    ++R++   +E +
Sbjct: 735 L-FVGRLAKRLADQEMSIELTDAAKVLMASKGYDPAMGARPLRREMQRNIEDA 786


>gi|255311682|ref|ZP_05354252.1| ATP-dependent zinc protease [Chlamydia trachomatis 6276]
 gi|255317983|ref|ZP_05359229.1| ATP-dependent zinc protease [Chlamydia trachomatis 6276s]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|210620978|ref|ZP_03292363.1| hypothetical protein CLOHIR_00306 [Clostridium hiranonis DSM 13275]
 gi|210154962|gb|EEA85968.1| hypothetical protein CLOHIR_00306 [Clostridium hiranonis DSM 13275]
          Length = 864

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + +IGQ  A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 568 KLEDELHKRVIGQDKAVTAVSDAV------IRARAGLKDENKPIGSFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         I+++++++ E   V R V
Sbjct: 622 AKTLARNLFDSEDNIIRIDMSEYMEKHSVSRLV 654


>gi|161524599|ref|YP_001579611.1| ATP-dependent chaperone ClpB [Burkholderia multivorans ATCC 17616]
 gi|189350645|ref|YP_001946273.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           multivorans ATCC 17616]
 gi|160342028|gb|ABX15114.1| ATP-dependent chaperone ClpB [Burkholderia multivorans ATCC 17616]
 gi|189334667|dbj|BAG43737.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
           multivorans ATCC 17616]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAINAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|76789586|ref|YP_328672.1| hypothetical protein CTA_0917 [Chlamydia trachomatis A/HAR-13]
 gi|237803273|ref|YP_002888467.1| Cell division protein [Chlamydia trachomatis B/Jali20/OT]
 gi|237805194|ref|YP_002889348.1| Cell division protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76168116|gb|AAX51124.1| FtsH [Chlamydia trachomatis A/HAR-13]
 gi|231273494|emb|CAX10410.1| Cell division protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274507|emb|CAX11303.1| Cell division protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|70943278|ref|XP_741705.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520252|emb|CAH80715.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 428

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   +N  + Q L A +     PK  LL G  G GKT +++ +A  
Sbjct: 216 VAGMKQAKEEIMEFVDFLKNPAKYQVLGAKI-----PKGALLCGAPGTGKTLLAKAVAGE 270

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 271 ANVPFFNISGSDFIEV-FVGIGPSRVRELFAQARKHAPSIIFIDEIDAVGRK 321


>gi|51893679|ref|YP_076370.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81388257|sp|Q67LC0|FTSH1_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|51857368|dbj|BAD41526.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 594

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  + K  +      LR   R + + A +     P+ ILL GP G GKT ++R LA
Sbjct: 146 QDVAGLDEVKAELQEVIDFLREPERYRAMGARI-----PRGILLSGPPGTGKTLLARALA 200

Query: 75  RLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
             AG PF     + F E   G     V  +       A  IV     D
Sbjct: 201 GEAGVPFFSASGSDFVELFAGTGAARVRALFDRARKAAPCIVFIDEID 248


>gi|33592328|ref|NP_879972.1| ATP-dependent protease, ATPase subunit [Bordetella pertussis Tohama
           I]
 gi|54035814|sp|Q7VYV6|CLPB_BORPE RecName: Full=Chaperone protein ClpB
 gi|33571973|emb|CAE41494.1| ATP-dependent protease, ATPase subunit [Bordetella pertussis Tohama
           I]
 gi|332381745|gb|AEE66592.1| ATP-dependent protease, ATPase subunit [Bordetella pertussis CS]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 568 MEDFLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 622 RALADFLFDSEEHMIRIDMSEFMEKHSVAR 651


>gi|325198605|gb|ADY94061.1| ATP-dependent chaperone ClpB [Neisseria meningitidis G2136]
          Length = 859

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|310286828|ref|YP_003938086.1| ATP-binding subunit of Clp protease [Bifidobacterium bifidum S17]
 gi|309250764|gb|ADO52512.1| ATP-binding subunit of Clp protease [Bifidobacterium bifidum S17]
          Length = 887

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 571 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 625

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 626 ALADFLFDDEKAMVRIDMSEYMEKASVSR 654


>gi|307103115|gb|EFN51378.1| hypothetical protein CHLNCDRAFT_37431 [Chlorella variabilis]
          Length = 238

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + I G    K  +   +   R+  R   L A       P  +LLVGP G GKT +++ +A
Sbjct: 55  KDIAGIDQVKEEITEIVQFLRDPARFLSLGA-----RSPAGMLLVGPPGTGKTLLAKAVA 109

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  T+F E+ +VG    ++ RD+   A
Sbjct: 110 GEAGVPFFSIAGTEFMEM-FVGVGASRV-RDIFKQA 143


>gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11]
 gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|291616887|ref|YP_003519629.1| ClpA [Pantoea ananatis LMG 20103]
 gi|291151917|gb|ADD76501.1| ClpA [Pantoea ananatis LMG 20103]
 gi|327393315|dbj|BAK10737.1| ATP-dependent Clp protease ATP- binding subunit ClpA [Pantoea
           ananatis AJ13355]
          Length = 758

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++            +D     + L  GPTGVGKT
Sbjct: 447 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
 gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|312194050|ref|YP_004014111.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c]
 gi|311225386|gb|ADP78241.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c]
          Length = 836

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQQ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHRRVIGQQQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDALIQLDMSEYMEKHTVSRLVGS 594


>gi|238752926|ref|ZP_04614388.1| Chaperone protein clpB 1 [Yersinia rohdei ATCC 43380]
 gi|238708834|gb|EEQ01090.1| Chaperone protein clpB 1 [Yersinia rohdei ATCC 43380]
          Length = 857

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEDLHKRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAMFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|169824691|ref|YP_001692302.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328]
 gi|167831496|dbj|BAG08412.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328]
          Length = 631

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +LLVGP G GKT +SR +A  A  PF  +  + F
Sbjct: 178 IVDFLKNPSKYIDIGARI-----PKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDF 232

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 233 VEM-FVGVGASRV-RDLFEQAKKN 254


>gi|152969472|ref|YP_001334581.1| ATP-dependent Clp protease ATP-binding subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|329998511|ref|ZP_08303133.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella sp.
           MS 92-3]
 gi|150954321|gb|ABR76351.1| ATP-binding component of serine protease [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328538656|gb|EGF64753.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella sp.
           MS 92-3]
          Length = 759

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 449 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 559


>gi|78777867|ref|YP_394182.1| peptidase M41, FtsH [Sulfurimonas denitrificans DSM 1251]
 gi|78498407|gb|ABB44947.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Sulfurimonas denitrificans DSM 1251]
          Length = 663

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK  V      L+   R  ++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 173 DDVAGVEEAKEEVQEIVDFLKYPARYVEIGAKI-----PKGVLLVGSPGTGKTLLAKAVA 227

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 228 GEADVPFFSVTGSSFIEM-FVGVGAARV-RDLFEQA 261


>gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781]
 gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763]
 gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300]
 gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937]
 gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781]
 gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763]
 gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300]
 gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937]
 gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981]
 gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|329116171|ref|ZP_08244888.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD
           2020]
 gi|326906576|gb|EGE53490.1| ATP-dependent metallopeptidase HflB [Streptococcus parauberis NCFD
           2020]
          Length = 668

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L+N  + + L A +     P  +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVDFLKNPKKYKALGARI-----PSGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            A  PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 243 EAAVPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 281


>gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635]
 gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|302552977|ref|ZP_07305319.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
 gi|302470595|gb|EFL33688.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGKRLIGQTEAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|255261200|ref|ZP_05340542.1| ATP-dependent chaperone ClpB [Thalassiobium sp. R2A62]
 gi|255103535|gb|EET46209.1| ATP-dependent chaperone ClpB [Thalassiobium sp. R2A62]
          Length = 871

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ    RAV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEDELGKRVIGQHGPVRAVSNAVR------RARAGLNDEGRPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 614 KAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|238920381|ref|YP_002933896.1| ATP-dependent Clp protease ATP-binding subunit [Edwardsiella
           ictaluri 93-146]
 gi|238869950|gb|ACR69661.1| ATP-dependent Clp protease ATP-binding subunit ClpA, putative
           [Edwardsiella ictaluri 93-146]
          Length = 764

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ  A  A+  A++            +D       L  GPTGVGKT ++ +L
Sbjct: 459 DRLRMLVFGQDKAISALTEAIK-----MSRAGLNQDHRPVGAFLFAGPTGVGKTEVTVQL 513

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           AR    P ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 514 ARALDIPLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKNPH 563


>gi|167754849|ref|ZP_02426976.1| hypothetical protein CLORAM_00353 [Clostridium ramosum DSM 1402]
 gi|167704899|gb|EDS19478.1| hypothetical protein CLORAM_00353 [Clostridium ramosum DSM 1402]
          Length = 654

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ-------ASINAEERILDALVGKT- 142
           +VG     V  + +     A  I+     D V  Q            E+ +   LV    
Sbjct: 242 FVGVGAGRVRDMFKKAKQTAPCIIFIDEIDAVGRQRGTGMGGGHDEREQTLNQLLVEMDG 301

Query: 143 ----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
                     A +N  +V    L      D++I +   D ++      +         ++
Sbjct: 302 FSGNEGIIILAATNRADVLDPALLRPGRFDRQIQVANPDKNARTEILKVHARNKKFAPDV 361

Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
                     G       +V      L   E  ++I MD +  +++  V     
Sbjct: 362 DFSNIAQRTPGFSGAELENVLNEAALLAVREDHKVISMDDI-DEAVDRVMGGPA 414


>gi|120553812|ref|YP_958163.1| ATPase [Marinobacter aquaeolei VT8]
 gi|120323661|gb|ABM17976.1| ATPase AAA-2 domain protein [Marinobacter aquaeolei VT8]
          Length = 859

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEALHDRVIGQDEAVEAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALANFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|56416863|ref|YP_153937.1| ATP-dependent Clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222475228|ref|YP_002563644.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Florida]
 gi|56388095|gb|AAV86682.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale
           str. St. Maries]
 gi|222419365|gb|ACM49388.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Florida]
          Length = 781

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L + I GQ  A   +  A+     R         +    + LL GPTGVGKT +
Sbjct: 474 KNLEENLKQVIFGQDAAISQIVDAI-----RIAKAGLRSHQKPLASYLLAGPTGVGKTEL 528

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++LA+  G   ++ +++++ E   V R
Sbjct: 529 VKQLAKNMGMKLVRFDMSEYMESHTVAR 556


>gi|42521034|ref|NP_966949.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410775|gb|AAS14883.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 768

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 18/101 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA   G   I+ +++++ E            GYVG +
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISRMIGSPPGYVGYD 564


>gi|15790463|ref|NP_280287.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236199|ref|YP_001689399.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10580959|gb|AAG19767.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727265|emb|CAP14051.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 691

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 22/184 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I G   AKR V   +    R   L   L D   P  +LL GP G GKT +++ +A   
Sbjct: 434 QDIGGLDRAKREVVRTVEWPQRYPALFERL-DAAAPTGVLLHGPPGTGKTMLAKAVAAST 492

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-DEVREQASIN------A 130
            A F+ V+  +     YVG + E+ +RDL + A  +       DEV   A         A
Sbjct: 493 DANFLSVDGPELMNR-YVGES-ERGVRDLFERARRLAPAVVFLDEVDSLAPARHDTDTGA 550

Query: 131 EERI-------LDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            ER+       LD L  +      A +N RE     L      + ++ + + D  +  + 
Sbjct: 551 SERVVSQLLTELDGLSPRGSVAVLAATNRRESVDPALLRPGRIETQVAVPIPDQDARAAI 610

Query: 179 FDIP 182
           F++ 
Sbjct: 611 FEVQ 614


>gi|83767415|dbj|BAE57554.1| unnamed protein product [Aspergillus oryzae]
          Length = 743

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 495 DDIAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 552

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 553 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 583


>gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122]
 gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122]
          Length = 697

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 166 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 223

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF+ +  + F E+ +VG    ++ RDL D A   
Sbjct: 224 APFLSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 256


>gi|115351836|ref|YP_773675.1| ATPase [Burkholderia ambifaria AMMD]
 gi|172060806|ref|YP_001808458.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MC40-6]
 gi|115281824|gb|ABI87341.1| ATPase AAA-2 domain protein [Burkholderia ambifaria AMMD]
 gi|171993323|gb|ACB64242.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MC40-6]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|327404644|ref|YP_004345482.1| membrane protease FtsH catalytic subunit [Fluviicola taffensis DSM
           16823]
 gi|327320152|gb|AEA44644.1| membrane protease FtsH catalytic subunit [Fluviicola taffensis DSM
           16823]
          Length = 700

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G + AK  +   +    R  Q   DL  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 207 KDVAGLEGAKEEIQEIVE-FLRSPQRYTDLGAKI-PKGALLVGPPGTGKTLLAKAVAGEA 264

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 265 KVPFFSLSGSDFVEM-FVGVGASRV-RDLFRQA 295


>gi|291334346|gb|ADD94005.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S11-C310]
          Length = 403

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 20/120 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++ +S+LDR     I GQ  A  +V  A++                   + L  GPTG
Sbjct: 84  SDKDKLSQLDRDLKLLIYGQDKAVESVVSAIK-----LSRAGLGSPRRPVGSFLFSGPTG 138

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           VGKT ++R+LA   G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 139 VGKTELARQLAACMGVEMLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDAVIKNPH 198


>gi|270291816|ref|ZP_06198031.1| cell division protein FtsH [Streptococcus sp. M143]
 gi|270279344|gb|EFA25186.1| cell division protein FtsH [Streptococcus sp. M143]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLADDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|238893944|ref|YP_002918678.1| ATP-dependent Clp protease ATP-binding subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546260|dbj|BAH62611.1| ATP-dependent clp protease ATP-binding subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 764

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 454 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 508

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 509 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 564


>gi|149181371|ref|ZP_01859868.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. SG-1]
 gi|148850934|gb|EDL65087.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. SG-1]
          Length = 700

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+ S L+  +IGQ +A + V+ A+     R+             + L +GPTGVGKT +S
Sbjct: 407 ELQSNLNSQVIGQDEAVKTVSKAI-----RRSRAGLKNRNRPIGSFLFIGPTGVGKTELS 461

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + LA+         I+++++++ E            GYVG     Q+   +     +I+ 
Sbjct: 462 KTLAQELFGTAEAMIRLDMSEYMEKHSISKLIGSPPGYVGHEEAGQLSEKVRRNPYSIIL 521

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  + +   L  L          E  R     G     +  + +  +++ 
Sbjct: 522 LDEIE----KAHPDVQHMFLQIL----------EDGRLTDSQGRTVSFKDSVIIMTSNAG 567

Query: 176 ISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
           +   +   G +   +  + +   +          +    V+  +  L  +E  ++ID+  
Sbjct: 568 VGFKEKHVGFTSHTMKETSILDNLKDYFKPEFLNRFDNIVE--FNSLGTNELKKIIDILL 625

Query: 233 VHRDSIQMVENYGIVFLDEF-DKIVARDSGNGIGV 266
               S+   +   ++  DE  DK+VA       G 
Sbjct: 626 NELYSVLEEQEIKLIVTDEVKDKLVADGYHPDFGA 660



 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 58/283 (20%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + + +  I +F   G   VG   LS+  ++ +    +  IR+ + +    + +    +LI
Sbjct: 437 LKNRNRPIGSFLFIGPTGVGKTELSKTLAQELFGTAEAMIRLDMSE---YMEKHSISKLI 493

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
                     +            Y I+ LDE +K            +   VQ   L ++E
Sbjct: 494 GSPPGYVGHEEAGQLSEKVRRNPYSIILLDEIEK------------AHPDVQHMFLQILE 541

Query: 281 -GSSVSTKYGSINTDHILFIASGAFHVSRPADLL---------------------PEIQG 318
            G    ++  +++    + I +    V      +                     PE   
Sbjct: 542 DGRLTDSQGRTVSFKDSVIIMTSNAGVGFKEKHVGFTSHTMKETSILDNLKDYFKPEFLN 601

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           RF   V   SL  ++ + I+      L+ +   +++ + I L  T++  D L     +  
Sbjct: 602 RFDNIVEFNSLGTNELKKII----DILLNELYSVLEEQEIKLIVTDEVKDKLVADGYH-- 655

Query: 379 STVGDIGARRLQTV----MERVLEDISFSASDLQEKTVVIDAE 417
               D GAR L+ +    +E  + D      D +E T VI+ E
Sbjct: 656 ---PDFGARPLRRIIQEKLEDTIADFILDYPDKKEMTAVIEEE 695


>gi|330503291|ref|YP_004380160.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           mendocina NK-01]
 gi|328917577|gb|AEB58408.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudomonas
           mendocina NK-01]
          Length = 756

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S +E++  L+R     + GQ  A  +++ A++              +    + L  GPTG
Sbjct: 448 SDKELLRNLERDLKLTVFGQDAAIDSLSTAIK-----LSRAGLKAPDKPVGSFLFAGPTG 502

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT  +R+LA+  G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 503 VGKTEAARQLAKAMGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAITKQPH 562

Query: 113 I 113
            
Sbjct: 563 C 563


>gi|322370336|ref|ZP_08044895.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320550044|gb|EFW91699.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 713

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 21/242 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  DAK+ +  A+        L    R E  P  +LL GP G GKT ++R LA  +
Sbjct: 458 EDVGGLNDAKQTLIEAVEWPLSYSNLFEATRTE-PPSGVLLYGPPGTGKTLLARALAGES 516

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEVREQASINAE--E 132
              F+ V   +  +  YVG    +V ++       +  I+     D +  Q   + E  E
Sbjct: 517 DVNFVSVAGPELLDR-YVGESEKSVREVFDRARQASPAIIFFDEIDALASQRGESHEVTE 575

Query: 133 RI-------LDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           R+       LD L         A +N RE     L      +  I+I             
Sbjct: 576 RVVSQLLTELDGLTENPNLVVLAATNRREAIDPALLRPGRLESHIEIPAPGEEGRRKILS 635

Query: 181 IPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +  G      ++  +  +  +       I   V+      +R+ +D L   +  +  + +
Sbjct: 636 VHAGDKPLADDIDLDWLATELEGYTGADIEALVRAASMRAIREAADELT-PEEANERADE 694

Query: 240 MV 241
           +V
Sbjct: 695 IV 696



 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            PK +LL GP G GKT I++ +A    A F+ V   +     Y G + E++     +   
Sbjct: 225 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFVSVSGPEVM-SKYKGESEERLREIFTEANE 283

Query: 112 NIVRESRRDEVREQASINAEE------------RILDALVGKTA-----TSNTREVFRKK 154
           N       DEV        EE             ++D L  +        +N  +     
Sbjct: 284 NAPAIIFFDEVDSLGGKRDEESDMENRLVAQMLSLMDGLESRGEVVVIGATNRVDAIDPA 343

Query: 155 LRDGEISDKEIDI 167
           LR G   D+EI+I
Sbjct: 344 LRRGGRFDREIEI 356


>gi|313139529|ref|ZP_07801722.1| ClpB [Bifidobacterium bifidum NCIMB 41171]
 gi|313132039|gb|EFR49656.1| ClpB [Bifidobacterium bifidum NCIMB 41171]
          Length = 894

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLGKRVIGQKEAIAAVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|296127731|ref|YP_003634983.1| ATP-dependent chaperone ClpB [Brachyspira murdochii DSM 12563]
 gi|296019547|gb|ADG72784.1| ATP-dependent chaperone ClpB [Brachyspira murdochii DSM 12563]
          Length = 859

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A  +VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 566 QLEEVLHKRVVGQDEAITSVADAIR------RNRAGLSDENKPLGSFLFIGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA           +++++++ E            GYVG +
Sbjct: 620 AKTLADFLFSDEHALTRIDMSEYMEKFSVTRLIGAPPGYVGYD 662


>gi|227547847|ref|ZP_03977896.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227080081|gb|EEI18044.1| ATP-dependent protease regulatory subunit, ClpB [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 852

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ+DA  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGERVVGQRDAVEAVSDAV-----RRSRAGVADPNRPIGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA          ++++++++ E            GYVG +    + + V      +   
Sbjct: 620 SLAEFLFDDETAMVRIDMSEYGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRRPYSL--V 677

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 678 LFDEV-EKAHQDVFDVLLQVL 697


>gi|225677314|ref|ZP_03788291.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590641|gb|EEH11891.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 768

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 18/101 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 470 KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 523

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA   G   I+ +++++ E            GYVG +
Sbjct: 524 LAKQLAESMGMNLIRFDMSEYIESHTISRMIGSPPGYVGYD 564


>gi|193213377|ref|YP_001999330.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
 gi|193086854|gb|ACF12130.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327]
          Length = 654

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 3   LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPK 54
            +F  S  +++SE D     + + G  +A   +   +    N  + +++   +     PK
Sbjct: 189 FSFGKSRAKLISEFDVKVTFKDVAGVNEAVEELQETVEFLMNPEKFEKIGGKI-----PK 243

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +LL+GP G GKT +++ +A  A  PF  +    F E+ +VG    ++ RDL + A   
Sbjct: 244 GVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFETAKKN 300


>gi|149193778|ref|ZP_01870876.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
 gi|149135731|gb|EDM24209.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
          Length = 493

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 30/224 (13%)

Query: 14  SELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +   + + G  + K  +      L+N  + +    +L     PK +LLVGP GVGKT I+
Sbjct: 91  NYTFKDVAGINEVKEELIEIVDFLKNPQKYRDFGINL-----PKGVLLVGPPGVGKTLIA 145

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRR 119
           + LA  AG PF     + F ++ YVG   +++ RDL   A  +                R
Sbjct: 146 KALAGEAGVPFFYQSGSSFVQM-YVGVGAKRV-RDLFSKAKAMAPSIIFIDEIDAIGKAR 203

Query: 120 DEVREQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
             +R         ++L  + G   +         N  E+  + L      D+ I +E+  
Sbjct: 204 GNLRNDEREATLNQLLTEMDGFEGSEGVIVIGATNKVELLDEALLRPGRFDRRIFVELPG 263

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
               +    +         NL E  +K+        +   V + 
Sbjct: 264 LKDRLEILKVHMKNKPFKGNL-ENIAKMTVGFSGAALASLVNEA 306


>gi|33602268|ref|NP_889828.1| ATP-dependent protease, ATPase subunit [Bordetella bronchiseptica
           RB50]
 gi|54035816|sp|Q7WHB6|CLPB_BORBR RecName: Full=Chaperone protein ClpB
 gi|33576707|emb|CAE33785.1| ATP-dependent protease, ATPase subunit [Bordetella bronchiseptica
           RB50]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 568 MEDFLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 622 RALADFLFDSEEHMIRIDMSEFMEKHSVAR 651


>gi|33596441|ref|NP_884084.1| ATP-dependent protease, ATPase subunit [Bordetella parapertussis
           12822]
 gi|54035815|sp|Q7W9E6|CLPB_BORPA RecName: Full=Chaperone protein ClpB
 gi|33566210|emb|CAE37116.1| ATP-dependent protease, ATPase subunit [Bordetella parapertussis]
          Length = 865

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 568 MEDFLHKRVVGQDEAVRLVSDAIR------RSRAGLADPSRPYGSFLFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I++++++F E   V R
Sbjct: 622 RALADFLFDSEEHMIRIDMSEFMEKHSVAR 651


>gi|119025427|ref|YP_909272.1| hypothetical protein BAD_0409 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765011|dbj|BAF39190.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 699

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+  A + V   +++  +       L   + P+ +LL GP G GKT ++R +A  AG
Sbjct: 224 DVAGEDAAVQEVEE-IKDFLKDPSRYKALGARI-PRGVLLYGPPGTGKTLLARAIAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ--------A 126
            PF  +  + F E+ +VG    ++ RDL D     A  I+     D V  +         
Sbjct: 282 VPFYSMAGSDFVEM-FVGLGASRV-RDLFDEAKKNAPAIIFIDEIDAVGRKRGGSGMSGG 339

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               E+ +   LV              A +N  +V    L      D+++ +E  D    
Sbjct: 340 HDEREQTLNQLLVEMDGFGNDTNLIIIAATNRPDVLDPALLRPGRFDRQVAVEAPDLEGR 399

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            +   +       + ++      V   G       +V      L      +LID +    
Sbjct: 400 EAILKVHAKGKPFVPDVDLHMIAVRTPGFTGADLANVLNEAALLCARAGAQLID-NRAID 458

Query: 236 DSIQMVENYG 245
           ++I  V+   
Sbjct: 459 EAIDRVQAGP 468


>gi|77411319|ref|ZP_00787668.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
 gi|77162655|gb|EAO73617.1| cell division protein FtsH [Streptococcus agalactiae CJB111]
          Length = 658

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 43/257 (16%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-IEVVDFLKDPKRYKSLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ R L + A             ++A        +D +
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDA-------------KKAERAII--FIDEI 289

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
                            R+  ++   I+++  + +  I              N S++   
Sbjct: 290 DAVGRRRGAGMGGGNDEREQTLNQLLIEMDGFEGNESIIVI--------AATNRSDVLDP 341

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIVA 257
            +    +   ++ V                  D   R++I  V        D  D K+VA
Sbjct: 342 ALLRPGRFDRKVLVG---------------QPDVKGREAILRVHAKNKPLADNVDLKVVA 386

Query: 258 RDSGNGIGVSREGVQRD 274
           + +   +G   E V  +
Sbjct: 387 QQTPGFVGADLENVLNE 403


>gi|328954749|ref|YP_004372082.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
 gi|328455073|gb|AEB06267.1| ATP-dependent chaperone ClpB [Coriobacterium glomerans PW2]
          Length = 872

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + SEL R +IGQ +A  AVA A+R      +  A L D   P  +   +GPTGVGKT 
Sbjct: 564 KTLESELHRRVIGQDEAVSAVASAVR------RSRAGLSDPNRPIGSFFFLGPTGVGKTE 617

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +++ LA          ++++++++ E            GYVG +
Sbjct: 618 LAKALAECLFDDERALVRIDMSEYMEKFSVQRLIGAPPGYVGYD 661


>gi|296111771|ref|YP_003622153.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833303|gb|ADG41184.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
           kimchii IMSNU 11154]
          Length = 683

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+ S L  ++IGQ+ A + VA A+R    R  L    R      + L VGPTGVGKT +
Sbjct: 385 QELDSHLSDHVIGQELAVQTVAKAIR--RNRIGLTKSGR---PIGSFLFVGPTGVGKTEL 439

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +++LA+         I+ +++++ E   V +
Sbjct: 440 AKQLAKEMFGSKEALIRFDMSEYMEKHAVSK 470


>gi|294634722|ref|ZP_06713253.1| ATP-dependent chaperone protein ClpB [Edwardsiella tarda ATCC
           23685]
 gi|291091852|gb|EFE24413.1| ATP-dependent chaperone protein ClpB [Edwardsiella tarda ATCC
           23685]
          Length = 857

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHKRVVGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|269958722|ref|YP_003328509.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
 gi|269848551|gb|ACZ49195.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma centrale
           str. Israel]
          Length = 781

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L + I GQ  A   +  A+     R         +    + LL GPTGVGKT +
Sbjct: 474 KNLEENLKQVIFGQDAAISQIVDAI-----RIAKAGLRSHQKPLASYLLAGPTGVGKTEL 528

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++LA+  G   ++ +++++ E   V R
Sbjct: 529 VKQLAKNMGMKLVRFDMSEYMESHTVAR 556


>gi|257877910|ref|ZP_05657563.1| peptidase M41 [Enterococcus casseliflavus EC20]
 gi|257812076|gb|EEV40896.1| peptidase M41 [Enterococcus casseliflavus EC20]
          Length = 702

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPLSDDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|224004952|ref|XP_002296127.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209586159|gb|ACI64844.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 664

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 93/262 (35%), Gaps = 34/262 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G Q+AK+ +   +       Q           +PK  LL GP G GKT +++ +A  
Sbjct: 175 DVAGCQEAKKEIMEFV----EFLQDATQFTKLGAKIPKGALLTGPPGTGKTLLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA------- 126
           A  PF  +  + F E+ +VG     V  + ++    A  IV     D V  Q        
Sbjct: 231 ANVPFYTISGSDFLEM-FVGVGPSRVRDLFKEARANAPCIVFIDEIDAVGRQRGRGGFGG 289

Query: 127 ----SINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                 N   ++L  + G + +        +N  ++  K L      D++I +++ D   
Sbjct: 290 GNDERENTLNQLLVEMDGFSPSTGVVVLAGTNRVDILDKALTRPGRFDRQITVDLPDLKG 349

Query: 175 DISNFDIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL--MRDESDRLID 229
               F I            +++   + +        I     +        + ES  + D
Sbjct: 350 RKEVFLIHLKGIKLDGDAEDVAGRLAGLTPGFAGADIANICNEAAIVAARRKAESVTMDD 409

Query: 230 MDTVHRDSIQMVENYGIVFLDE 251
            +      I  +E+  I+ +DE
Sbjct: 410 FEKATDRIIGGLESNKIMSVDE 431


>gi|209543912|ref|YP_002276141.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531589|gb|ACI51526.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 867

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R ++GQ+ A +AVA A+R      +  A L+D   P  + L +GPTGVGKT + 
Sbjct: 566 MEDELRRSVVGQEPALKAVANAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LAR         ++V++++F E            GYVG     +   L + A     +
Sbjct: 620 KALARFLFDDEKALLRVDMSEFMEKHAVSRLIGAPPGYVGYEEGGV---LTEAARRRPYQ 676

Query: 117 SRRDEVREQASINAEERILDAL 138
               +  E+A  +    +L  L
Sbjct: 677 VILFDEVEKAHEDVFNVLLQVL 698


>gi|189485209|ref|YP_001956150.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|310946769|sp|B1GZK7|FTSH_UNCTG RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|170287168|dbj|BAG13689.1| cell division protease FtsH [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 631

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      L++  R Q+L   +     PK +LL G  G GKT +++ +A
Sbjct: 156 KDVAGCDEAKEELQELIEFLKDPARFQKLGGKI-----PKGVLLFGSPGTGKTLLAKAVA 210

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV 122
             A  PF     ++F E+ +VG    ++ RDL D     A  ++     D V
Sbjct: 211 GEANVPFFSSSGSEFVEM-FVGVGASRV-RDLFDHGRKSAPCLLFIDEIDAV 260


>gi|147804915|emb|CAN66870.1| hypothetical protein VITISV_013674 [Vitis vinifera]
          Length = 869

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 7   FSPREIVSEL--------DRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKN 55
           ++P+E+  E+         + + G  DAK     V   L+N  +  +L   L     PK 
Sbjct: 326 YAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKL-----PKG 380

Query: 56  ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAIN 112
           ILL G  G GKT +++ +A  AG PF     ++F E+ +VG   R V  + +     A  
Sbjct: 381 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPC 439

Query: 113 IVRESRRDEV 122
           I+     D V
Sbjct: 440 IIFIDEIDAV 449


>gi|152997266|ref|YP_001342101.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           sp. MWYL1]
 gi|150838190|gb|ABR72166.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas
           sp. MWYL1]
          Length = 751

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   + GQ +A  A++ A++             ++    + L+ GPTGVGKT +++
Sbjct: 450 LERNLKMVVFGQDNAIDALSAAIK-----LSRAGLKAEQKPIGSFLMAGPTGVGKTEVTK 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA+  G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 505 QLAKQLGLELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKNPHS 557


>gi|33865834|ref|NP_897393.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH
           8102]
 gi|33633004|emb|CAE07815.1| FtsH ATP-dependent protease homolog [Synechococcus sp. WH 8102]
          Length = 637

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 45/269 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK+ +      L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVAEAKQELQEVVTFLKQPERFTSVGAQI-----PRGLLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQA----- 126
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V  Q      
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAVGRQRGAGIG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      ++L  + G    S        N  +V    L      D+++ ++  D  
Sbjct: 295 GGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSALMRPGRFDRQVTVDAPDIK 354

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
             +S  ++          LS            ++           LM + +   I     
Sbjct: 355 GRLSILEVHCRNKKLEEELS-------LESIARRTPGFTGADLANLMNEAA---ILTARR 404

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
            +++I + E       D  D+I+A   G 
Sbjct: 405 RKEAIGLSEID-----DAVDRIIAGMEGR 428


>gi|154245846|ref|YP_001416804.1| ATPase [Xanthobacter autotrophicus Py2]
 gi|154159931|gb|ABS67147.1| ATPase AAA-2 domain protein [Xanthobacter autotrophicus Py2]
          Length = 879

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 30/235 (12%)

Query: 15  ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73
           EL + ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +++ L
Sbjct: 565 ELAKRVVGQSEAVAAVSTAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELTKAL 618

Query: 74  ARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           A          ++++++++ E            GYVG +    + + V      V     
Sbjct: 619 AEFLFDDETAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQV--VLF 676

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV E+A  +    +L  L     T         +     ++       +AD    +  F
Sbjct: 677 DEV-EKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNVLIVMTSNLGAEFLADPRQPMG-F 734

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE-----LMRDESDRLID 229
            +PG     +++  E +  VMG+ R+      + +         L R++ D ++D
Sbjct: 735 KVPGHEGETVVSDEEAYDMVMGAVRRHFRPEFINRIDEIVMFHRLKREQMDSIVD 789


>gi|322377894|ref|ZP_08052382.1| cell division protein FtsH [Streptococcus sp. M334]
 gi|321281070|gb|EFX58082.1| cell division protein FtsH [Streptococcus sp. M334]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  +   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAENVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSIIDSSD 419


>gi|319746206|gb|EFV98475.1| cell division protein FtsH [Streptococcus agalactiae ATCC 13813]
          Length = 658

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 43/257 (16%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-IEVVDFLKDPKRYKSLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ R L + A             ++A        +D +
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDA-------------KKAERAII--FIDEI 289

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
                            R+  ++   I+++  + +  I              N S++   
Sbjct: 290 DAVGRRRGAGMGGGNDEREQTLNQLLIEMDGFEGNESIIVI--------AATNRSDVLDP 341

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIVA 257
            +    +   ++ V                  D   R++I  V        D  D K+VA
Sbjct: 342 ALLRPGRFDRKVLVG---------------QPDVKGREAILRVHAKNKPLADNVDLKVVA 386

Query: 258 RDSGNGIGVSREGVQRD 274
           + +   +G   E V  +
Sbjct: 387 QQTPGFVGADLENVLNE 403


>gi|296415338|ref|XP_002837347.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633211|emb|CAZ81538.1| unnamed protein product [Tuber melanosporum]
          Length = 819

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT ++R +A  AG PF  +  ++F E+ YVG   +++ R+L   A 
Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEV-YVGVGAKRV-RELFAQA- 433

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNT 147
                      R +A        LDA+ GK    + 
Sbjct: 434 -----------RAKAPAIVFIDELDAIGGKRNERDA 458


>gi|289643372|ref|ZP_06475494.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata]
 gi|289506824|gb|EFD27801.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata]
          Length = 834

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQQ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHRRVIGQQQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDALIQLDMSEYMEKHTVSRLVGS 594


>gi|269836987|ref|YP_003319215.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943100|sp|D1C2C6|FTSH2_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|269786250|gb|ACZ38393.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 652

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 23/234 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++ K  VA  +   + R           +P+ +LL GP G GKT ++R LA  A
Sbjct: 160 DDVAGAEEVKEEVADIVD--YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGEA 217

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV---REQASINAE 131
            A F  V  ++F E+ YVG     V ++ R   + A  I+     D +   R +   ++E
Sbjct: 218 RASFFSVSGSEFVEL-YVGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRMEQSSE 276

Query: 132 -----ERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                 +IL  + G          A +N  ++    L      D+++ +++ D  +  + 
Sbjct: 277 YDQTLNQILVEMDGFEERTTVVVVAATNRVDILDPALLRPGRFDRKVVVDLPDRKARRAI 336

Query: 179 FDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
            ++         N++ +  +          +   + +      RD  + + + D
Sbjct: 337 LEVHARGKPLAENVNLDELAARTTGMTGADLANVINEAAILAARDRRETITNQD 390


>gi|226226799|ref|YP_002760905.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
 gi|226089990|dbj|BAH38435.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27]
          Length = 658

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L++  +  +L   L     PK  LLVGP G GKT +++ +A 
Sbjct: 173 DVAGADEAKIELQEIIEFLKDPQKFTRLGGRL-----PKGALLVGPPGTGKTLLAKAVAG 227

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 228 EAGRPFFSMSGSDFVEM-FVGVGASRV-RDLFEQGKAHAPCIIFIDEIDAV 276


>gi|166154185|ref|YP_001654303.1| cell division protein [Chlamydia trachomatis 434/Bu]
 gi|166155060|ref|YP_001653315.1| cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335430|ref|ZP_07223674.1| cell division protein [Chlamydia trachomatis L2tet1]
 gi|310943125|sp|B0B970|FTSH_CHLT2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|165930173|emb|CAP03657.1| Cell division protein [Chlamydia trachomatis 434/Bu]
 gi|165931048|emb|CAP06611.1| Cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPK 54
           ++F  SP  ++++         + G ++AK  +   +   +N  +   L   +     PK
Sbjct: 406 MSFGKSPARLLAKGQNKVTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PK 460

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ILL+G  G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 461 GILLIGAPGTGKTLIAKAVAGEADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|153829376|ref|ZP_01982043.1| clpB protein [Vibrio cholerae 623-39]
 gi|148875159|gb|EDL73294.1| clpB protein [Vibrio cholerae 623-39]
          Length = 839

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|89891684|ref|ZP_01203187.1| AAA-metalloprotease FtsH [Flavobacteria bacterium BBFL7]
 gi|89516019|gb|EAS18683.1| AAA-metalloprotease FtsH [Flavobacteria bacterium BBFL7]
          Length = 673

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G + AK  +      L+N  +   L   +     PK  LL+G  G GKT +
Sbjct: 201 VKTTFKDVAGLEGAKEEIQEIVDFLKNPEKYTSLGGKI-----PKGALLIGSPGTGKTLL 255

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 256 AKAVAGEAKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 294


>gi|56459783|ref|YP_155064.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina loihiensis L2TR]
 gi|56178793|gb|AAV81515.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina loihiensis L2TR]
          Length = 756

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L   + GQ +A   +  A+     R        D     + +  GPTGVGKT +
Sbjct: 452 KQLDRNLKMVVFGQDEAIDKLTGAI-----RLSRSGLANDNQPIGSFIFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA+  G   ++ +++++ E            GYVG     ++ D V    + 
Sbjct: 507 TQQLAKAMGIELVRFDMSEYMERHAVSRLIGAPPGYVGYEQGGLLTDAVIKQPHC 561


>gi|223933448|ref|ZP_03625433.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
 gi|302023122|ref|ZP_07248333.1| cell division protease FtsH [Streptococcus suis 05HAS68]
 gi|223897886|gb|EEF64262.1| ATP-dependent metalloprotease FtsH [Streptococcus suis 89/1591]
          Length = 656

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 298

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 299 ----GMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 354

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 355 VGRPDVKGREAILKVHAKN--KPLAADVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 412

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 413 KTVIDASD 420


>gi|94310897|ref|YP_584107.1| ATPase AAA-2 [Cupriavidus metallidurans CH34]
 gi|93354749|gb|ABF08838.1| ATP-dependent Clp protease, ATP-binding subunit ClpB (protein
           disaggregation chaperone) [Cupriavidus metallidurans
           CH34]
          Length = 862

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A R V+ A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHQRVVGQDEAVRLVSDAIR------RSRAGLSDENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + L+          I++++++F E   V R
Sbjct: 618 CKALSEFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|324506581|gb|ADY42806.1| Paraplegin [Ascaris suum]
          Length = 788

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  V+  +   +N  R  +L A L     PK  LL GP G GKT +++ LA
Sbjct: 318 KDVAGLHEAKIEVSEFVDYLKNPGRYTKLGAKL-----PKGALLTGPPGCGKTLLAKALA 372

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             + APFI +  T+F E+  G     +  + ++    A  I+     D +  +
Sbjct: 373 AESSAPFISMNGTEFVEMIGGLGASRIRNLFKEAKSRAPCIIYIDEIDAIGRK 425


>gi|323937989|gb|EGB34251.1| ATP-dependent Clp protease ATP-binding ClpA [Escherichia coli
           E1520]
          Length = 758

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLDDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|312082078|ref|XP_003143295.1| hypothetical protein LOAG_07714 [Loa loa]
 gi|307761541|gb|EFO20775.1| hypothetical protein LOAG_07714 [Loa loa]
          Length = 753

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 116/309 (37%), Gaps = 53/309 (17%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK         L+   +  +L A L     PK  LL GP G GKT +++ LA
Sbjct: 287 KDVAGLHEAKVEIEEFVDYLKRPEKYMKLGARL-----PKGALLTGPPGCGKTFLAKALA 341

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASINA- 130
             +  PFI +  T+F E+  G     +  + +    +A  I+     D + R+++   A 
Sbjct: 342 TESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKMAPCIIYIDEIDAIGRKRSQSEAT 401

Query: 131 ------EERILDALVGKTA------------TSNTREVFRKKLRDGEISDKEIDIEVADT 172
                 EE+ L+ L+ +              ++N  ++  K L      D+ I I++   
Sbjct: 402 GGGSREEEQTLNQLLVEMDGIDSGRGIVLLGSTNRGDILDKALLRPGRFDRHIVIDLPTA 461

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232
                 F++               SK+      +     + +  P     +   +++   
Sbjct: 462 LERQEMFELY-------------LSKIKLDHEPQYYSKRLAQRTPRFSGADIANVVNEAA 508

Query: 233 VHRDSIQMVENYGIVFLDEFD----KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288
           +   S +     G+V +D+ D    +I+A        +  E  +R+++   E       +
Sbjct: 509 IRAASSEK----GLVTVDDLDESLQRILAGAEKRSRSMVEE--EREIVAYHESGHALIGW 562

Query: 289 GSINTDHIL 297
              +TD +L
Sbjct: 563 LMEHTDALL 571


>gi|221198117|ref|ZP_03571163.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD2M]
 gi|221208392|ref|ZP_03581395.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD2]
 gi|221215144|ref|ZP_03588111.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD1]
 gi|221165080|gb|EED97559.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD1]
 gi|221171805|gb|EEE04249.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD2]
 gi|221182049|gb|EEE14450.1| ATP-dependent chaperone ClpB [Burkholderia multivorans CGD2M]
          Length = 865

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQDEAINAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|323497828|ref|ZP_08102842.1| hypothetical protein VISI1226_18161 [Vibrio sinaloensis DSM 21326]
 gi|323317175|gb|EGA70172.1| hypothetical protein VISI1226_18161 [Vibrio sinaloensis DSM 21326]
          Length = 857

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A   VA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMEQFLHKRVIGQTEAVEVVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 615 CKTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|261392272|emb|CAX49792.1| chaperone ClpB (short) [Neisseria meningitidis 8013]
          Length = 805

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 511 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 565 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 595


>gi|257080312|ref|ZP_05574673.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
 gi|256988342|gb|EEU75644.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
          Length = 831

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI-RMSVQKCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I    V     +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|255714607|ref|XP_002553585.1| KLTH0E02200p [Lachancea thermotolerans]
 gi|238934967|emb|CAR23148.1| KLTH0E02200p [Lachancea thermotolerans]
          Length = 780

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ +A  AV+ A+     R Q      ++    + + +GPTG GKT +++
Sbjct: 467 MEDSLRKRVVGQDEAIDAVSDAV-----RLQRAGLTSEKRPIASFMFLGPTGTGKTELTK 521

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 522 ALAEFLFDNESNVIRFDMSEFQEKHTVSRLIGAPPGYVMSESGGQLTEAVRRK 574


>gi|256380924|ref|YP_003104584.1| ATP-dependent chaperone ClpB [Actinosynnema mirum DSM 43827]
 gi|255925227|gb|ACU40738.1| ATP-dependent chaperone ClpB [Actinosynnema mirum DSM 43827]
          Length = 860

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   ++GQ +A R V+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 564 MEDELTGRVVGQAEAVRVVSDAV-----RRTRAGVADPDRPTGSFLFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA+         I++++++++E   V R V
Sbjct: 619 ALAQFLFDDERAMIRIDMSEYSEKHSVARLV 649


>gi|241009958|ref|XP_002405303.1| hypothetical protein IscW_ISCW024033 [Ixodes scapularis]
 gi|215491731|gb|EEC01372.1| hypothetical protein IscW_ISCW024033 [Ixodes scapularis]
          Length = 173

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G ++AK  +   + N  +  Q   +L  ++ PK  +L GP G GKT +++  A  A
Sbjct: 102 KDVAGCEEAKVEIMEFV-NFLKNPQQYTELGAKI-PKGAILTGPPGTGKTLLAKATAGEA 159

Query: 78  GAPFIKVEVTKFTE 91
             PFI V  ++F E
Sbjct: 160 NVPFITVSGSEFLE 173


>gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 635

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K     +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 168 DDVAGVEESKTELEEIVEFLKSPQRFTEIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 222

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 223 GEAGVPFFSISGSEFVEL-FVGTGAARV-RDLFEQA 256


>gi|68160836|gb|AAY86864.1| lr1227 [Lactobacillus reuteri]
          Length = 551

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  +G PF  +  + F
Sbjct: 210 IVEFLKNPKKFTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDF 264

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 265 VEM-FVGVGASRV-RDLFDQA 283


>gi|291565552|dbj|BAI87834.1| AAA ATPase [Aspergillus oryzae]
          Length = 784

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 496 DDIAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 553

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 554 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 584


>gi|290510630|ref|ZP_06550000.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella sp.
           1_1_55]
 gi|289777346|gb|EFD85344.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella sp.
           1_1_55]
          Length = 761

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 451 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 505

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 506 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 561


>gi|206576060|ref|YP_002239466.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella
           pneumoniae 342]
 gi|288936314|ref|YP_003440373.1| ATP-dependent Clp protease ATP-binding subunit clpA [Klebsiella
           variicola At-22]
 gi|206565118|gb|ACI06894.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella
           pneumoniae 342]
 gi|288891023|gb|ADC59341.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Klebsiella
           variicola At-22]
          Length = 759

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 449 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 EVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 559


>gi|171741153|ref|ZP_02916960.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283455478|ref|YP_003360042.1| cell division protein [Bifidobacterium dentium Bd1]
 gi|306823451|ref|ZP_07456826.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|309802710|ref|ZP_07696814.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276767|gb|EDT44428.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283102112|gb|ADB09218.1| ftsH Cell division protein [Bifidobacterium dentium Bd1]
 gi|304553158|gb|EFM41070.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|308220774|gb|EFO77082.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 688

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+  A + V   +++  +       L   + P+ +LL GP G GKT ++R +A  AG
Sbjct: 213 DVAGEDAAVQEVEE-IKDFLKDPSRYKALGARI-PRGVLLYGPPGTGKTLLARAIAGEAG 270

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ--------A 126
            PF  +  + F E+ +VG    ++ RDL D     A  I+     D V  +         
Sbjct: 271 VPFYSMAGSDFVEM-FVGLGASRV-RDLFDEAKKNAPAIIFIDEIDAVGRKRGGSGMSGG 328

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               E+ +   LV              A +N  +V    L      D+++ +E  D    
Sbjct: 329 HDEREQTLNQLLVEMDGFNNDTNLIIIAATNRPDVLDPALLRPGRFDRQVAVEAPDLEGR 388

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            +   +       + ++      V   G       +V      L      +LID +    
Sbjct: 389 EAILKVHAKGKPFVPDVDLHMIAVRTPGFTGADLANVLNEAALLCARAGAQLID-NRAID 447

Query: 236 DSIQMVENYG 245
           ++I  V+   
Sbjct: 448 EAIDRVQAGP 457


>gi|76787819|ref|YP_328742.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77405616|ref|ZP_00782705.1| cell division protein FtsH [Streptococcus agalactiae H36B]
 gi|76562876|gb|ABA45460.1| cell division protein FtsH [Streptococcus agalactiae A909]
 gi|77175760|gb|EAO78540.1| cell division protein FtsH [Streptococcus agalactiae H36B]
          Length = 658

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 43/257 (16%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-IEVVDFLKDPKRYKSLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ R L + A             ++A        +D +
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDA-------------KKAERAII--FIDEI 289

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
                            R+  ++   I+++  + +  I              N S++   
Sbjct: 290 DAVGRRRGAGMGGGNDEREQTLNQLLIEMDGFEGNESIIVI--------AATNRSDVLDP 341

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIVA 257
            +    +   ++ V                  D   R++I  V        D  D K+VA
Sbjct: 342 ALLRPGRFDRKVLVG---------------QPDVKGREAILRVHAKNKPLADNVDLKVVA 386

Query: 258 RDSGNGIGVSREGVQRD 274
           + +   +G   E V  +
Sbjct: 387 QQTPGFVGADLENVLNE 403


>gi|95930478|ref|ZP_01313214.1| ATPase AAA-2 [Desulfuromonas acetoxidans DSM 684]
 gi|95133518|gb|EAT15181.1| ATPase AAA-2 [Desulfuromonas acetoxidans DSM 684]
          Length = 754

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 18/110 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGKTA 68
           + +  +L + + GQ  A   V  ++       +  A L   E    + L  GPTGVGKT 
Sbjct: 450 KHLERKLRQQVFGQDPAIHQVVRSI------LRARAGLGHPEHPIGSFLFAGPTGVGKTE 503

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           ++R+LA+  G  F + +++++ E            GYVG +   ++ D V
Sbjct: 504 VARQLAQQLGVAFTRFDMSEYMEKHSVARLIGAPPGYVGFDQGGLLTDAV 553


>gi|322374182|ref|ZP_08048715.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. C150]
 gi|321276887|gb|EFX53959.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. C150]
          Length = 816

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 512 LEAELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 566

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  ++ +++++ E            GYVG +
Sbjct: 567 TLAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607


>gi|330723806|gb|AEC46176.1| cell division protein [Mycoplasma hyorhinis MCLD]
          Length = 726

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 46/223 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+  E++ ++             LRN  +     A +     PK ILL GP G GKT I+
Sbjct: 244 EVKEEIEEFV-----------DYLRNPKKYASAGAKI-----PKGILLGGPPGTGKTLIA 287

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130
           +  A  A  PF  +  + F E+ YVG   +++ R+L   A              +A   A
Sbjct: 288 KATAGEANVPFFFISASNFVEL-YVGVGAKRV-RELFKDA--------------RAEAPA 331

Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190
               +D L     +  +        R+  ++   ++++           +  G   +   
Sbjct: 332 I-IFIDELDAIGRSRGSGIGGGNDEREQTLNQLLVEMD--------GMVENSGLLIIAAT 382

Query: 191 NLSELFSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLI 228
           N +++    +    +    + V     ++    L      + I
Sbjct: 383 NRTDVLDPALMRPGRFDRTVIVNYPDIKEREEILKLHAKGKRI 425


>gi|330795076|ref|XP_003285601.1| hypothetical protein DICPUDRAFT_46211 [Dictyostelium purpureum]
 gi|325084423|gb|EGC37851.1| hypothetical protein DICPUDRAFT_46211 [Dictyostelium purpureum]
          Length = 882

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 24/140 (17%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AVA A+       +  + L  E  P  + L +GPTGVGKT +++ 
Sbjct: 566 EHLHKRVVGQDEAVDAVADAV------LRSKSGLARENQPLGSFLFLGPTGVGKTELAKA 619

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           LA          I+++++++ E            GYVG +    + + V      V    
Sbjct: 620 LAFELFDDEKHMIRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSV--VL 677

Query: 119 RDEVREQASINAEERILDAL 138
            DEV E+A       +L  L
Sbjct: 678 FDEV-EKAHQQVWNVLLQVL 696


>gi|306820237|ref|ZP_07453879.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551734|gb|EFM39683.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 624

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 31/246 (12%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  + K  +      L+N  +   L A +     PK +L++G  G GKT +S+ +A  
Sbjct: 170 VAGLDEEKEELQEVVDFLKNPKKYSDLGARI-----PKGMLMIGSPGTGKTYLSKAVAGE 224

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ-------A 126
           AG PF  +  + F E+ YVG     V ++       A  IV     D V  +        
Sbjct: 225 AGVPFYSISGSGFVEM-YVGVGAARVRELFDQAKKTAPCIVFIDEIDAVGRKRGAGLGGG 283

Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               E+ +   LV              A +N  ++    L      D+EI + + D    
Sbjct: 284 HDEREQTLNQLLVEMDGFIDNQGVIVMAATNRPDILDPALLRPGRFDREIVVGIPDLKGR 343

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
                +        ++++         G       ++      L    + + I+M+ +  
Sbjct: 344 EEILKVHSKNKPLDIDVNLTTIARRIPGFTPADIENIMNEAAILTARANLKKINMEMI-E 402

Query: 236 DSIQMV 241
           ++I  V
Sbjct: 403 EAITKV 408


>gi|288920479|ref|ZP_06414787.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
 gi|288348131|gb|EFC82400.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
          Length = 834

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQEQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDALIQLDMSEYMEKHTVSRLVGS 594


>gi|260437757|ref|ZP_05791573.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
 gi|292809779|gb|EFF68984.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM
           2876]
          Length = 618

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     PK ++LVGP G GKT I++ +A  AG PF  +  + F
Sbjct: 189 IVDFLKNPGKYVELGARI-----PKGVILVGPPGTGKTLIAKAVAGEAGVPFFSISGSDF 243

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 244 VEM-FVGVGASRV-RDLFEEAKKN 265


>gi|303310921|ref|XP_003065472.1| ATP-dependent metalloprotease, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105134|gb|EER23327.1| ATP-dependent metalloprotease, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034637|gb|EFW16580.1| cell division protease ftsH [Coccidioides posadasii str. Silveira]
          Length = 914

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 430 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 487

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 488 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 517


>gi|156555726|ref|XP_001601862.1| PREDICTED: similar to paraplegin [Nasonia vitripennis]
          Length = 775

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 20/169 (11%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G Q+AK  +   +      +R++            +P+  LL+GP G GKT +++ +
Sbjct: 299 DVAGLQEAKTEIMEFVDYLKSPDRYK-------TLGAKVPRGALLLGPPGCGKTLLAKAV 351

Query: 74  ARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
           A  A  PF+ +  ++F E+  G     V  + ++    A +I+     D + ++ S +A+
Sbjct: 352 ATEANVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPSIIYIDEIDAIGKKRSESAD 411

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                      +T    +   + L + +      ++ V  +++     D
Sbjct: 412 R------GAGQSTDEGEQTLNQLLTEMDGMSSNQEVIVLASTNRAEVLD 454


>gi|119194843|ref|XP_001248025.1| hypothetical protein CIMG_01796 [Coccidioides immitis RS]
          Length = 914

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 430 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 487

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 488 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 517


>gi|192455670|ref|NP_001122223.1| fidgetin-like protein 1 [Danio rerio]
 gi|190339286|gb|AAI62519.1| Wu:fb82h05 [Danio rerio]
 gi|220678852|emb|CAX12972.1| novel protein (zgc:193664) [Danio rerio]
          Length = 661

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 388 DDIAGLEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 445

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  +A    
Sbjct: 446 GATFFSISASSLT-SKWVGEG-EKMVRALFAIARCHQ 480


>gi|54035760|sp|Q6LMY0|CLPB_PHOPR RecName: Full=Chaperone protein ClpB
          Length = 857

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHQRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSEDNMVRIDMSEFMEKHSVARLV 647


>gi|93005671|ref|YP_580108.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
 gi|92393349|gb|ABE74624.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
          Length = 865

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 566 MEEKLHERVIGQDEAVEAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 620 KSLANFLFDSEDAIVRIDMSEYMEKHSVSRLV 651


>gi|330811801|ref|YP_004356263.1| Chaperone [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379909|gb|AEA71259.1| Chaperone [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
          Length = 854

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L + +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT +
Sbjct: 561 KMESLLHQRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|325289939|ref|YP_004266120.1| ATP-dependent chaperone ClpB [Syntrophobotulus glycolicus DSM 8271]
 gi|324965340|gb|ADY56119.1| ATP-dependent chaperone ClpB [Syntrophobotulus glycolicus DSM 8271]
          Length = 863

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R +IGQ+ A +AV+  +R      +    L D   P  + L +GPTGVGKT +
Sbjct: 564 QMEENLHRRVIGQEQAVKAVSDGIR------RARTGLHDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          I+++++++ E   V R V
Sbjct: 618 AKALAEFLFDDEQALIRIDMSEYMEKHAVSRLV 650


>gi|229547309|ref|ZP_04436034.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX1322]
 gi|229307548|gb|EEN73535.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
           [Enterococcus faecalis TX1322]
          Length = 831

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI-RMSVQKCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I    V     +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQEV 749


>gi|323339619|ref|ZP_08079892.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           ruminis ATCC 25644]
 gi|323092944|gb|EFZ35543.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           ruminis ATCC 25644]
          Length = 834

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 30/249 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A +AV+ A+R      +  + L D   P  + + +GPTG GKT ++
Sbjct: 512 LEKILHKRVVGQDEAIKAVSKAIR------RARSGLSDPTRPIGSFMFLGPTGAGKTELA 565

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+++++++ E            GYVG +       L +   N    
Sbjct: 566 KALAEAMFGSEDAMIRIDMSEYMEKYSTSRLIGAPPGYVGYD---EGGQLTEKVRNKPYS 622

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    S  R+V  +       S+        + S  
Sbjct: 623 VVLLDEVEKAHPDVFNILLQVLDDGYLTDSKGRKVNFRNTIIIMTSNLGATALRDEKSVG 682

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD---RLIDMDT 232
               D+    +     + E   K        +I   V   +  L +DE     +L+  D 
Sbjct: 683 FGATDLSNDYAAMSSKIRESLKKRFRPEFLNRIDEIVI--FHSLEKDELHQIVKLMAKDV 740

Query: 233 VHRDSIQMV 241
           + R + Q V
Sbjct: 741 IKRIAEQKV 749



 Score = 39.9 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           S  +G+ +  +     S     S      PE   R    V   SL K +   I+     +
Sbjct: 680 SVGFGATDLSNDYAAMSSKIRESLKKRFRPEFLNRIDEIVIFHSLEKDELHQIVKLMAKD 739

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404
           +I +    +  + + L  T  +I+ +A    +       I  R LQT +E +L +     
Sbjct: 740 VIKR----IAEQKVKLKVTPAAIEVVAKAGFDPEYGARPI-RRALQTEVEDLLSEALLQG 794

Query: 405 SDLQEKTVVIDAE 417
                 TV I A+
Sbjct: 795 KIQIGDTVTIGAK 807


>gi|170692320|ref|ZP_02883483.1| ATP-dependent chaperone ClpB [Burkholderia graminis C4D1M]
 gi|170142750|gb|EDT10915.1| ATP-dependent chaperone ClpB [Burkholderia graminis C4D1M]
          Length = 865

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEDKLHERVIGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALAAFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|159902789|ref|YP_001550133.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211]
 gi|159887965|gb|ABX08179.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211]
          Length = 602

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G + AK  +A     L++  R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 147 RDVAGIEGAKLELAEVVDFLKSPDRFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAVA 201

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 202 GEAAVPFFSISGSEFVEM-FVGVGASRV-RDLFEQAKKN 238


>gi|4587717|gb|AAD25872.1|AF027500_2 ATP-dependent Clp protease regulatory subunit [Aquifex pyrophilus]
          Length = 631

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + +IGQ +A +AVA A+R    R  L    R        + +GPTGVGKT  ++
Sbjct: 433 IEEELKKRVIGQDEAIKAVAKAIR--RSRVGLKGKHR---PIGVFMFLGPTGVGKTETAK 487

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          I+ +++++ E   V R
Sbjct: 488 ALAEYLFGTEDALIRFDMSEYMEKHTVSR 516


>gi|68072013|ref|XP_677920.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498213|emb|CAI04524.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 769

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   +N  + Q L A +     PK  LL G  G GKT +++ +A  
Sbjct: 215 VAGMKQAKEEIMEFVDFLKNPAKYQVLGAKI-----PKGALLCGAPGTGKTLLAKAVAGE 269

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 270 ANVPFFNISGSDFIEV-FVGIGPSRVRELFSQARKHAPSIIFIDEIDAVGRK 320


>gi|94985312|ref|YP_604676.1| ATPase AAA-2 [Deinococcus geothermalis DSM 11300]
 gi|94555593|gb|ABF45507.1| ATPase AAA-2 [Deinococcus geothermalis DSM 11300]
          Length = 861

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ  A  +VA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 561 LEEQLHERVIGQDRAIVSVADAIR------RARAGLNDPNRPLGSFMFLGPTGVGKTELA 614

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGR 97
           + LA     +P   I+++++++ E   V R
Sbjct: 615 KALAEFLFDSPDAMIRIDMSEYMEKHSVAR 644


>gi|22536201|ref|NP_687052.1| cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|25010090|ref|NP_734485.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76797989|ref|ZP_00780248.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77407696|ref|ZP_00784451.1| cell division protein FtsH [Streptococcus agalactiae COH1]
 gi|77414466|ref|ZP_00790616.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|22533018|gb|AAM98924.1|AE014191_16 cell division protein FtsH [Streptococcus agalactiae 2603V/R]
 gi|23094441|emb|CAD45660.1| cell division protein FtsH [Streptococcus agalactiae NEM316]
 gi|76586669|gb|EAO63168.1| cell division protein FtsH [Streptococcus agalactiae 18RS21]
 gi|77159476|gb|EAO70637.1| cell division protein FtsH [Streptococcus agalactiae 515]
 gi|77173695|gb|EAO76809.1| cell division protein FtsH [Streptococcus agalactiae COH1]
          Length = 658

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 43/257 (16%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-IEVVDFLKDPKRYKSLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ R L + A             ++A        +D +
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDA-------------KKAERAII--FIDEI 289

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198
                            R+  ++   I+++  + +  I              N S++   
Sbjct: 290 DAVGRRRGAGMGGGNDEREQTLNQLLIEMDGFEGNESIIVI--------AATNRSDVLDP 341

Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIVA 257
            +    +   ++ V                  D   R++I  V        D  D K+VA
Sbjct: 342 ALLRPGRFDRKVLVG---------------QPDVKGREAILRVHAKNKPLADNVDLKVVA 386

Query: 258 RDSGNGIGVSREGVQRD 274
           + +   +G   E V  +
Sbjct: 387 QQTPGFVGADLENVLNE 403


>gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
 gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
          Length = 765

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            GQ   K  +   +    +  +   +     +PK +LL GP G GKT ++R +A  AG P
Sbjct: 224 AGQDYIKAELQEVV----KLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGLP 279

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           F  V   +F E+ Y G    ++ +DL   A N 
Sbjct: 280 FFSVGGAEFVEM-YAGVAAARV-QDLFSRARNF 310


>gi|257887256|ref|ZP_05666909.1| AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257823310|gb|EEV50242.1| AAA ATPase [Enterococcus faecium 1,141,733]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|297588661|ref|ZP_06947304.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516]
 gi|297574034|gb|EFH92755.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516]
          Length = 637

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +LLVGP G GKT +SR +A  A  PF  +  + F
Sbjct: 178 IVDFLKNPSKYIDIGARI-----PKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDF 232

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 233 VEM-FVGVGASRV-RDLFEQAKKN 254


>gi|268593139|ref|ZP_06127360.1| ATP-dependent chaperone protein ClpB [Providencia rettgeri DSM
           1131]
 gi|291311412|gb|EFE51865.1| ATP-dependent chaperone protein ClpB [Providencia rettgeri DSM
           1131]
          Length = 857

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 562 MEQQLHQRVIGQDEAVVAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|294657904|ref|XP_460208.2| DEHA2E20834p [Debaryomyces hansenii CBS767]
 gi|199433038|emb|CAG88481.2| DEHA2E20834p [Debaryomyces hansenii]
          Length = 801

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + L   +IGQ +A  AVA A+     R Q      D+    + + +GPTG GKT ++
Sbjct: 494 DMEATLKDKVIGQDEAINAVADAV-----RLQRAGLTSDKRPIASFIFLGPTGTGKTELT 548

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA       +  I+ ++++F E   + R +  
Sbjct: 549 KSLAEFLFHDKSSVIRFDMSEFQEKHTISRLIGS 582


>gi|54310128|ref|YP_131148.1| putative clpB, ATPase with chaperone activity [Photobacterium
           profundum SS9]
 gi|46914567|emb|CAG21346.1| putative clpB, ATPases with chaperone activity [Photobacterium
           profundum SS9]
          Length = 861

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEDELHQRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KTLANFMFDSEDNMVRIDMSEFMEKHSVARLV 651


>gi|241758789|ref|ZP_04756902.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           flavescens SK114]
 gi|241320997|gb|EER57210.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Neisseria
           flavescens SK114]
          Length = 588

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 294 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 347

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 348 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 378


>gi|145299396|ref|YP_001142237.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142852168|gb|ABO90489.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 750

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   +  A+     R        +       L  GPTGVGKT +
Sbjct: 447 KNLERNLKMVVFGQDKAIEVLTDAI-----RLSRSGLGNERRPVGCFLFAGPTGVGKTEV 501

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +++L +  G   ++ +++++ E   V R
Sbjct: 502 TQQLGKALGVEMLRFDMSEYMERHTVSR 529


>gi|332654078|ref|ZP_08419822.1| negative regulator of genetic competence ClpC/MecB [Ruminococcaceae
           bacterium D16]
 gi|332517164|gb|EGJ46769.1| negative regulator of genetic competence ClpC/MecB [Ruminococcaceae
           bacterium D16]
          Length = 839

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
            E+   L+R ++GQ+ A + VA A+R      +    L+D   P    LL+GP+GVGKT 
Sbjct: 524 EELEQSLERTVLGQEQAVKTVARAVR------RGRLGLKDPRRPVGCFLLLGPSGVGKTQ 577

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + R LA+         I+ +++++ E   V R +  
Sbjct: 578 LCRSLAQTLFGSSEALIRFDMSEYMEAHSVSRLIGS 613



 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE   R    +    L +     I       L+ +  + +++ G+ +   ED++  LA
Sbjct: 720 FAPEFLNRLDAALVFHPLGEETLVSITRQ----LLDETGKRLESLGVTMQVEEDAVRLLA 775

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDI 400
               +      D GAR L+  +   +ED 
Sbjct: 776 KKGSHR-----DYGARPLRRAIAAWVEDP 799


>gi|327308730|ref|XP_003239056.1| mitochondrial inner membrane AAA protease Yta12 [Trichophyton
           rubrum CBS 118892]
 gi|326459312|gb|EGD84765.1| mitochondrial inner membrane AAA protease Yta12 [Trichophyton
           rubrum CBS 118892]
          Length = 911

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +    L  ++ P+  +L GP G GKT +++  A  + 
Sbjct: 424 DVAGMDEAKVEIMEFV-SFLKRPEQFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESA 481

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 482 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 511


>gi|322378643|ref|ZP_08053079.1| cell division protein (ftsH) [Helicobacter suis HS1]
 gi|322379895|ref|ZP_08054181.1| cell division protein (ftsH) [Helicobacter suis HS5]
 gi|321147690|gb|EFX42304.1| cell division protein (ftsH) [Helicobacter suis HS5]
 gi|321148950|gb|EFX43414.1| cell division protein (ftsH) [Helicobacter suis HS1]
          Length = 645

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G ++AK  V   + +  +     A L  ++ PK +LLVGP G GKT +++ +A  A
Sbjct: 183 NDMAGNEEAKEEVVEIV-DFLKYPDRYASLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEA 240

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL ++A          DE+       A   ++ 
Sbjct: 241 SVPFFSMGGSSFIEM-FVGLGASRV-RDLFEIAKKEAPSIIFIDEIDAIGKSRAAGGVI- 297

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
                +      +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 298 -----SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLV 352

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K   +GR + +++ ++
Sbjct: 353 DKPDFNGRVEILKVHIK 369


>gi|311278478|ref|YP_003940709.1| ATP-dependent chaperone ClpB [Enterobacter cloacae SCF1]
 gi|308747673|gb|ADO47425.1| ATP-dependent chaperone ClpB [Enterobacter cloacae SCF1]
          Length = 857

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|293556232|ref|ZP_06674822.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1039]
 gi|294615628|ref|ZP_06695483.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1636]
 gi|291591457|gb|EFF23111.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1636]
 gi|291601651|gb|EFF31913.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1039]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|271500836|ref|YP_003333861.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya
           dadantii Ech586]
 gi|270344391|gb|ACZ77156.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya
           dadantii Ech586]
          Length = 758

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L   + GQ  A  A+  A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 RSLSDRLKMLVFGQDKAIEALTEAIK------MSRAGLGHERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 503 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHS 558


>gi|255003210|ref|ZP_05278174.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Puerto Rico]
 gi|255004338|ref|ZP_05279139.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Virginia]
          Length = 768

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L + I GQ  A   +  A+     R         +    + LL GPTGVGKT +
Sbjct: 461 KNLEENLKQVIFGQDAAISQIVDAI-----RIAKAGLRSHQKPLASYLLAGPTGVGKTEL 515

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++LA+  G   ++ +++++ E   V R
Sbjct: 516 VKQLAKNMGMKLVRFDMSEYMESHTVAR 543


>gi|227551605|ref|ZP_03981654.1| S14 family endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257884473|ref|ZP_05664126.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257895792|ref|ZP_05675445.1| AAA ATPase [Enterococcus faecium Com12]
 gi|257898362|ref|ZP_05678015.1| AAA ATPase [Enterococcus faecium Com15]
 gi|293377592|ref|ZP_06623781.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium PC4.1]
 gi|293571788|ref|ZP_06682804.1| ATP-dependent chaperone ClpB [Enterococcus faecium E980]
 gi|227179282|gb|EEI60254.1| S14 family endopeptidase Clp [Enterococcus faecium TX1330]
 gi|257820311|gb|EEV47459.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257832357|gb|EEV58778.1| AAA ATPase [Enterococcus faecium Com12]
 gi|257836274|gb|EEV61348.1| AAA ATPase [Enterococcus faecium Com15]
 gi|291608042|gb|EFF37348.1| ATP-dependent chaperone ClpB [Enterococcus faecium E980]
 gi|292643592|gb|EFF61713.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium PC4.1]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|184154697|ref|YP_001843037.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227514337|ref|ZP_03944386.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|183226041|dbj|BAG26557.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956]
 gi|227087309|gb|EEI22621.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931]
 gi|299782819|gb|ADJ40817.1| M41 family endopeptidase FtsH [Lactobacillus fermentum CECT 5716]
          Length = 722

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F
Sbjct: 208 IVEFLKNPKKFMRLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 262

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL + A
Sbjct: 263 VEM-FVGVGASRV-RDLFEQA 281


>gi|121730758|ref|ZP_01682855.1| ATPase family associated with various cellular activities (AAA)
           protein [Vibrio cholerae V52]
 gi|121627669|gb|EAX60331.1| ATPase family associated with various cellular activities (AAA)
           protein [Vibrio cholerae V52]
          Length = 338

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 122 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 175

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 176 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 207


>gi|67536774|ref|XP_662161.1| hypothetical protein AN4557.2 [Aspergillus nidulans FGSC A4]
 gi|40741710|gb|EAA60900.1| hypothetical protein AN4557.2 [Aspergillus nidulans FGSC A4]
 gi|259482613|tpe|CBF77262.1| TPA: mitochondrial inner membrane AAA protease Yta12, putative
           (AFU_orthologue; AFUA_2G02680) [Aspergillus nidulans
           FGSC A4]
          Length = 883

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   ++  R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 403 DVAGMDEAKVEIMEFVSFLKSPERFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 457

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 458 ESGVPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 490


>gi|323450958|gb|EGB06837.1| hypothetical protein AURANDRAFT_59175 [Aureococcus anophagefferens]
          Length = 479

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   +K     V   L N  +  ++ A       P+ +LL GP G GKT ++R +A
Sbjct: 31  DDVAGCDASKLELEEVVDFLSNPEKFTKVGAQ-----SPRGVLLEGPPGTGKTLLARAVA 85

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDVAINIVRESRRDEV 122
             AG PFI    ++F E+ +VG        +  D    A  I+     D +
Sbjct: 86  GEAGVPFISASGSEFVEM-FVGVGASRIRSLFADAKKNAPCIIFIDEIDAI 135


>gi|300857286|ref|YP_003782270.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
 gi|300437401|gb|ADK17168.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528]
          Length = 602

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ ++  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 192 RIPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 249

Query: 111 INI 113
              
Sbjct: 250 KKN 252


>gi|257868305|ref|ZP_05647958.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257874422|ref|ZP_05654075.1| peptidase M41 [Enterococcus casseliflavus EC10]
 gi|257802419|gb|EEV31291.1| peptidase M41 [Enterococcus casseliflavus EC30]
 gi|257808586|gb|EEV37408.1| peptidase M41 [Enterococcus casseliflavus EC10]
          Length = 702

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPLSDDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|261203869|ref|XP_002629148.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis SLH14081]
 gi|239586933|gb|EEQ69576.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis SLH14081]
 gi|327356146|gb|EGE85003.1| matrix AAA protease MAP-1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 910

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 420 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 477

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 478 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 507


>gi|303235059|ref|ZP_07321683.1| Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493914|gb|EFL53696.1| Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 637

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +LLVGP G GKT +SR +A  A  PF  +  + F
Sbjct: 178 IVDFLKNPSKYIDIGARI-----PKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDF 232

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 233 VEM-FVGVGASRV-RDLFEQAKKN 254


>gi|302380252|ref|ZP_07268724.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3]
 gi|302312035|gb|EFK94044.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3]
          Length = 637

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +LLVGP G GKT +SR +A  A  PF  +  + F
Sbjct: 178 IVDFLKNPSKYIDIGARI-----PKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDF 232

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 233 VEM-FVGVGASRV-RDLFEQAKKN 254


>gi|293568999|ref|ZP_06680312.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1071]
 gi|291588432|gb|EFF20267.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1071]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|261207870|ref|ZP_05922555.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289566614|ref|ZP_06447034.1| ATP-dependent chaperone ClpB [Enterococcus faecium D344SRF]
 gi|294619343|ref|ZP_06698807.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1679]
 gi|294623272|ref|ZP_06702137.1| ATP-dependent chaperone ClpB [Enterococcus faecium U0317]
 gi|260078253|gb|EEW65959.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289161604|gb|EFD09484.1| ATP-dependent chaperone ClpB [Enterococcus faecium D344SRF]
 gi|291594392|gb|EFF25805.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1679]
 gi|291597300|gb|EFF28486.1| ATP-dependent chaperone ClpB [Enterococcus faecium U0317]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|229492957|ref|ZP_04386752.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis
           SK121]
 gi|229319987|gb|EEN85813.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis
           SK121]
          Length = 850

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + ++GQ DA  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MESELGKRVVGQTDAVVAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          I+++++++ E   V R V      +   A   + E+ R  
Sbjct: 621 ALADFLFDDERAMIRIDMSEYGEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|197301564|ref|ZP_03166637.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
 gi|197299294|gb|EDY33821.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC
           29176]
          Length = 1169

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           +IG ++AK  +A     L+N  +       L     PK +LL GP G GKT ++R +A  
Sbjct: 737 VIGAENAKTELAWFTEFLKNPKKYSMEGRRL-----PKGVLLYGPPGTGKTMLARAMAGE 791

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           +   F++   T+F    YVG++ E I R               DE+   A   
Sbjct: 792 SDVAFLETSATQFMNS-YVGKSEENIRRLFRTARKYAPAIIFIDEIDAIAKER 843


>gi|167625066|ref|YP_001675360.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
 gi|167355088|gb|ABZ77701.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
          Length = 650

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   + Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVKELVDYLKEPTKFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            +  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 ESKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|154486836|ref|ZP_02028243.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
 gi|154084699|gb|EDN83744.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
          Length = 699

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G+  A + V   +++  +       L   + P+ +LL GP G GKT ++R +A  AG
Sbjct: 224 DVAGEDAAVQEVEE-IKDFLKDPSRYKALGARI-PRGVLLYGPPGTGKTLLARAIAGEAG 281

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEV-REQA------- 126
            PF  +  + F E+ +VG    ++ RDL D     A  I+     D V R++        
Sbjct: 282 VPFYSMAGSDFVEM-FVGLGASRV-RDLFDEAKKNAPAIIFIDEIDAVGRKRGGSGMSGG 339

Query: 127 ---SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    ++L  + G          A +N  +V    L      D+++ +E  D    
Sbjct: 340 HDEHEQTLNQLLVEMDGFDNDTNLIIIAATNRPDVLDPALLRPGRFDRQVAVEAPDLEGR 399

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
            +   +       + ++      V   G       +V      L      +LID +    
Sbjct: 400 EAILKVHAKGKPFVPDVDLHMIAVRTPGFTGADLANVLNEAALLCARAGAQLID-NRAID 458

Query: 236 DSIQMVENYG 245
           ++I  V+   
Sbjct: 459 EAIDRVQAGP 468


>gi|69246678|ref|ZP_00604068.1| AAA ATPase, central region:Clp, N terminal [Enterococcus faecium
           DO]
 gi|257878405|ref|ZP_05658058.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257889396|ref|ZP_05669049.1| AAA ATPase [Enterococcus faecium 1,231,410]
 gi|257894409|ref|ZP_05674062.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|258616076|ref|ZP_05713846.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Enterococcus
           faecium DO]
 gi|260559994|ref|ZP_05832172.1| AAA ATPase [Enterococcus faecium C68]
 gi|293563855|ref|ZP_06678287.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1162]
 gi|314939819|ref|ZP_07847037.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium
           TX0133a04]
 gi|314941451|ref|ZP_07848341.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133C]
 gi|314949622|ref|ZP_07852945.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0082]
 gi|314950820|ref|ZP_07853891.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133A]
 gi|314992240|ref|ZP_07857679.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133B]
 gi|314995368|ref|ZP_07860473.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium
           TX0133a01]
 gi|68195152|gb|EAN09610.1| AAA ATPase, central region:Clp, N terminal [Enterococcus faecium
           DO]
 gi|257812633|gb|EEV41391.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257825756|gb|EEV52382.1| AAA ATPase [Enterococcus faecium 1,231,410]
 gi|257830788|gb|EEV57395.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|260073829|gb|EEW62153.1| AAA ATPase [Enterococcus faecium C68]
 gi|291604184|gb|EFF33686.1| ATP-dependent chaperone ClpB [Enterococcus faecium E1162]
 gi|313590414|gb|EFR69259.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium
           TX0133a01]
 gi|313593208|gb|EFR72053.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133B]
 gi|313596996|gb|EFR75841.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133A]
 gi|313599736|gb|EFR78579.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0133C]
 gi|313640915|gb|EFS05495.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium
           TX0133a04]
 gi|313644015|gb|EFS08595.1| ATP-dependent chaperone protein ClpB [Enterococcus faecium TX0082]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|332306354|ref|YP_004434205.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173683|gb|AEE22937.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 755

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S + +  +L   + GQ  A   +  A+     R        +     + L  GPTGVGKT
Sbjct: 449 SLKNLDRDLKLVVFGQDQAIDTLTDAI-----RLSRAGLGVETKPIGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            I+++L+ + G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 504 EITQQLSNIMGVELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHS 560

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 561 VVLLDEIEKAHSDVFNILLQVMDHGTLTDNN 591


>gi|288870055|ref|ZP_06112759.2| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
 gi|288868612|gb|EFD00911.1| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM
           13479]
          Length = 606

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           V   L+N  +   + A +     PK ILLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 177 VVDFLKNPQKYTSVGARI-----PKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 231

Query: 90  TEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
            E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 232 VEM-FVGVGASRV-RDLFEEGKKHAPCIIFIDEIDAV 266


>gi|269960955|ref|ZP_06175324.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           harveyi 1DA3]
 gi|269834174|gb|EEZ88264.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           harveyi 1DA3]
          Length = 756

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 447 SDKDILKNLDDKMKMLVFGQDNAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVLKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|257871357|ref|ZP_05651010.1| peptidase M41 [Enterococcus gallinarum EG2]
 gi|257805521|gb|EEV34343.1| peptidase M41 [Enterococcus gallinarum EG2]
          Length = 697

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPLSDDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|228470856|ref|ZP_04055703.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Porphyromonas
           uenonis 60-3]
 gi|228307423|gb|EEK16433.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Porphyromonas
           uenonis 60-3]
          Length = 1011

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L   +IGQ DA   V  A+  +  R  L +D R      + L +GPTGVGKT +
Sbjct: 671 RQMRQTLKDIVIGQDDAINKVVKAI--QRNRLGLGSDKR---PIGSFLFLGPTGVGKTYL 725

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           +++LA L        I+++++++ E            GYVG +
Sbjct: 726 AKKLAELLFDDEDALIRIDMSEYMESFNVSRLVGAAPGYVGYD 768


>gi|226304880|ref|YP_002764838.1| chaperone ClpB [Rhodococcus erythropolis PR4]
 gi|226183995|dbj|BAH32099.1| chaperone ClpB [Rhodococcus erythropolis PR4]
          Length = 850

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + ++GQ DA  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MESELGKRVVGQTDAVVAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          I+++++++ E   V R V      +   A   + E+ R  
Sbjct: 621 ALADFLFDDERAMIRIDMSEYGEKHSVARLVGAPPGYVGYEAGGQLTEAVRRR 673


>gi|172041483|ref|YP_001801197.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Corynebacterium urealyticum DSM 7109]
 gi|171852787|emb|CAQ05763.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Corynebacterium urealyticum DSM 7109]
          Length = 860

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+ S L   ++GQ+DA  AV+ A+     R+             + L +GPTGVGKT ++
Sbjct: 568 EMESVLAGRVVGQKDAVNAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          +++++++F E            GYVG +    + + V      V  
Sbjct: 623 KALAEFLFDDEHAMVRIDMSEFGEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTV-- 680

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +  + +L  L
Sbjct: 681 VLFDEV-EKAHPDVFDILLQVL 701


>gi|160894591|ref|ZP_02075367.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
 gi|156863902|gb|EDO57333.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50]
          Length = 640

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 197 IVSFLKNPGRFVKVGARI-----PKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSDF 251

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL D A   
Sbjct: 252 VEM-FVGVGASRV-RDLFDEAKKN 273


>gi|76818320|ref|YP_335233.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
 gi|76582793|gb|ABA52267.1| FtsH-2 protease [Burkholderia pseudomallei 1710b]
          Length = 917

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 421 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 473

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 474 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 509


>gi|16331154|ref|NP_441882.1| ClpB protein [Synechocystis sp. PCC 6803]
 gi|54035750|sp|P74459|CLPB1_SYNY3 RecName: Full=Chaperone protein ClpB 1
 gi|1653648|dbj|BAA18560.1| ClpB protein [Synechocystis sp. PCC 6803]
          Length = 898

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 576 QLEGHLHQRVIGQKEAVAAVSAAIR------RARAGMKDPSRPIGSFLFMGPTGVGKTEL 629

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 630 ARALAGFLFDSEEAMVRIDMSEYMEKHAVSR 660


>gi|158312055|ref|YP_001504563.1| ATPase [Frankia sp. EAN1pec]
 gi|158107460|gb|ABW09657.1| ATPase AAA-2 domain protein [Frankia sp. EAN1pec]
          Length = 834

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ+ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHRRVIGQEQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDSLIQLDMSEYMEKHTVSRLVGS 594


>gi|317496968|ref|ZP_07955298.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895980|gb|EFV18132.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 696

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL +++IGQ +A  AVA A+    +R ++     +     + L +GPTGVGKT +
Sbjct: 385 RHLEKELHKHVIGQDEAVNAVAKAV----KRSRVGLKSPN-RPIGSFLFLGPTGVGKTEL 439

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           S+ LA+         I+V+++++ E   V +
Sbjct: 440 SKTLAKALFGREEDLIRVDMSEYMEKHSVSK 470


>gi|260584481|ref|ZP_05852228.1| cell division protein FtsH [Granulicatella elegans ATCC 700633]
 gi|260157999|gb|EEW93068.1| cell division protein FtsH [Granulicatella elegans ATCC 700633]
          Length = 681

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 192 DVAGAEEEKQELVEVVEFLKDPRKFTALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 246

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 247 EANVPFFSISGSEFVEM-FVGVGASRV-RDLFENAKKN 282


>gi|257882823|ref|ZP_05662476.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257818481|gb|EEV45809.1| AAA ATPase [Enterococcus faecium 1,231,502]
          Length = 869

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|115708806|ref|XP_001200814.1| PREDICTED: similar to paraplegin, partial [Strongylocentrotus
           purpuratus]
 gi|115762318|ref|XP_787789.2| PREDICTED: similar to paraplegin, partial [Strongylocentrotus
           purpuratus]
          Length = 526

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + + G ++AK  V   +     +R +   +L  ++ PK  LL+GP G GKT +++ +A  
Sbjct: 190 KDVAGLKEAKVEVMEFVDYL--KRPEKFMELGAKV-PKGALLLGPPGCGKTLLAKAVATE 246

Query: 77  AGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
           A  PF+ +  ++F E+  G     V  + ++  + A  IV     D +  + S +A 
Sbjct: 247 ANVPFLAMAGSEFVEMIGGLGAARVRSLFKEARNRAPCIVYIDELDAIGRKRSDSAN 303


>gi|300704290|ref|YP_003745893.1| chaperone [Ralstonia solanacearum CFBP2957]
 gi|299071954|emb|CBJ43284.1| Chaperone [Ralstonia solanacearum CFBP2957]
          Length = 862

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT + 
Sbjct: 565 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGISDENKPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 619 KALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|299144437|ref|ZP_07037517.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518922|gb|EFI42661.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 623

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK +L+VGP G GKT +SR +A  A  PF  +  + F
Sbjct: 175 IVDFLKNPKKFVNMGARI-----PKGVLMVGPPGTGKTYLSRAVAGEAKVPFFIMSGSDF 229

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 230 VEM-FVGVGASRV-RDLFENAKKN 251


>gi|296185574|ref|ZP_06853983.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049702|gb|EFG89127.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 582

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 118/321 (36%), Gaps = 47/321 (14%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G ++AK +V   + +  +R           MPK ++L G  G GKT +++ +A  AG 
Sbjct: 152 IAGNEEAKESVKDLV-DFLKRPDKYTSYGA-RMPKGVILYGEPGTGKTLLAKAVAGEAGV 209

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----------RDEVREQASI 128
           PF  V  + F ++ YVG    +I R L   A N                 +     ++S 
Sbjct: 210 PFYAVSGSDFIQV-YVGVGASRI-RQLFKKARNNSTGKAVIFIDEIDAIGKKRDSGKSSG 267

Query: 129 NAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
            ++ER      +L  + G             N  ++    L      D+ I+I + D S+
Sbjct: 268 GSDERDQTLNALLTEMSGFNEKEGIIIMAATNRLDMLDPALLRPGRFDRHIEIMLPDISA 327

Query: 175 DISNFDIP-GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                D+      +G +N+ E   K       K I   V +      ++ S  + D+   
Sbjct: 328 REKILDLHLKNKPIGNINIKEWAQKTSYFSGAK-IENLVNEAAILACKENSKNINDLHLD 386

Query: 234 HRDSIQMV--ENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
              SI +   E     ++ + D KI A        VS        L ++   +VS     
Sbjct: 387 KAFSIVLAGHEKKNRDYIKDIDRKITAYHEAGHALVS--------LKVLPNETVSKITII 438

Query: 291 INTDHILFIASGAFHVSRPAD 311
            +T       +G + +S P D
Sbjct: 439 PSTKG-----AGGYTLSIPED 454


>gi|270285015|ref|ZP_06194409.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
          Length = 912

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  +   L   +     PK ILL+G  G GKT I++ +A 
Sbjct: 427 DVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PKGILLIGAPGTGKTLIAKAVAG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|239608836|gb|EEQ85823.1| mitochondrial inner membrane AAA protease Yta12 [Ajellomyces
           dermatitidis ER-3]
          Length = 910

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   +    + +Q         +P+  +L GP G GKT +++  A  +G
Sbjct: 420 DVAGMDEAKVEIMEFVSFLKKPEQFQRLGA--KIPRGAILSGPPGTGKTLLAKATAGESG 477

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 478 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 507


>gi|198427611|ref|XP_002131406.1| PREDICTED: similar to fidgetin-like 1 [Ciona intestinalis]
          Length = 597

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            +I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 323 DHIAGLEYAKATIKEVVIWPMMRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 380

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GA F  +  +  T   ++G+  E+++R L  VA
Sbjct: 381 GATFFSISASSLT-SKWIGQG-EKMVRALFAVA 411


>gi|168186858|ref|ZP_02621493.1| ATP-dependent chaperone ClpB [Clostridium botulinum C str. Eklund]
 gi|169295215|gb|EDS77348.1| ATP-dependent chaperone ClpB [Clostridium botulinum C str. Eklund]
          Length = 866

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT ++
Sbjct: 569 LEDELRKRVIGQDEATVAVSNAV------IRARAGLKDERRPIGSFIFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LAR         I+++++++ E   V R V
Sbjct: 623 KTLARNLFDSEDNIIRIDMSEYMEKHAVSRLV 654


>gi|15834849|ref|NP_296608.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
 gi|7190269|gb|AAF39101.1| cell division protein FtsH, putative [Chlamydia muridarum Nigg]
          Length = 920

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  +   L   +     PK ILL+G  G GKT I++ +A 
Sbjct: 435 DVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PKGILLIGAPGTGKTLIAKAVAG 489

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 490 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 522


>gi|315452779|ref|YP_004073049.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
 gi|315131831|emb|CBY82459.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
          Length = 560

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 27/184 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++ K  +      L+N  + Q L   L     PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDVAGTKEVKEELYEIVDYLKNPKKYQDLKIKL-----PKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F +I YVG     V ++       + +IV     D V + +     
Sbjct: 217 SEAKVPFFYHSGSAFVQI-YVGVGAKRVRELFAKAKAFSPSIVFIDEIDAVGKARGHQRN 275

Query: 131 EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G   +S        N  +V  + L      D+ I I + D    I
Sbjct: 276 DEREATLNQLLTEMDGFEESSQVIVIGATNKIDVMDEALLRSGRFDRRIFISLPDLEERI 335

Query: 177 SNFD 180
              D
Sbjct: 336 QILD 339


>gi|309701159|emb|CBJ00459.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ETEC H10407]
          Length = 758

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLDDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|301336413|ref|ZP_07224615.1| cell division protein FtsH, putative [Chlamydia muridarum
           MopnTet14]
          Length = 912

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  +   L   +     PK ILL+G  G GKT I++ +A 
Sbjct: 427 DVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PKGILLIGAPGTGKTLIAKAVAG 481

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 482 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 514


>gi|238749792|ref|ZP_04611297.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           rohdei ATCC 43380]
 gi|238712447|gb|EEQ04660.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Yersinia
           rohdei ATCC 43380]
          Length = 734

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L+  + GQ  A  A+  A++             +     + L  GPTGVGKT +
Sbjct: 425 KNLSERLNMLVFGQDKAIDALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKTEV 479

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 480 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 533


>gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430]
          Length = 642

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  V      L+N  R   L A +     PK +LLVGP G GKT +++ +A
Sbjct: 180 EDMAGNSEAKDEVVEVVDFLKNPERYATLGAKI-----PKGVLLVGPPGTGKTLLAKAVA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL + A
Sbjct: 235 GEANVPFFSVSGSSFIEM-FVGVGASRV-RDLFENA 268


>gi|242023022|ref|XP_002431935.1| paraplegin, putative [Pediculus humanus corporis]
 gi|212517286|gb|EEB19197.1| paraplegin, putative [Pediculus humanus corporis]
          Length = 756

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            + G ++AK  +   +     +R +    L  ++ PK  LL+GP G GKT +++ +A  A
Sbjct: 274 DVAGLKEAKIEIMEFVDYL--KRPEHYKSLGAKV-PKGALLLGPPGCGKTLLAKAVATEA 330

Query: 78  GAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
             PF+ +  ++F E+  G     V  +  +    +  IV     D V ++
Sbjct: 331 NVPFLSMNGSEFIEMIGGLGAARVRDLFNEAKKRSPCIVYIDEIDAVGKK 380


>gi|170055839|ref|XP_001863760.1| spastin [Culex quinquefasciatus]
 gi|167875728|gb|EDS39111.1| spastin [Culex quinquefasciatus]
          Length = 543

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A   
Sbjct: 268 QDIAGQEVAKQALQEMVILPSVRPELFTGLRTP--AKGLLLFGPPGNGKTLLARAVATEC 325

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 326 SATFFSISAATLT-SKYVGDG-EKLVRALFSVA 356


>gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
 gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris
           marina MBIC11017]
          Length = 631

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +++K     +   L++  R  ++ A +     PK +LLVGP G GKT +++ +A
Sbjct: 170 DDVAGVEESKTELEEIVEFLKSPQRFTEIGAKI-----PKGVLLVGPPGTGKTLMAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSISGSEFVEL-FVGTGAARV-RDLFEQA 258


>gi|146317677|ref|YP_001197389.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|146319867|ref|YP_001199578.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|253750938|ref|YP_003024079.1| cell division protease FtsH [Streptococcus suis SC84]
 gi|253752837|ref|YP_003025977.1| cell division protease FtsH [Streptococcus suis P1/7]
 gi|253754662|ref|YP_003027802.1| cell division protease FtsH [Streptococcus suis BM407]
 gi|145688483|gb|ABP88989.1| ATP-dependent Zn protease [Streptococcus suis 05ZYH33]
 gi|145690673|gb|ABP91178.1| ATP-dependent Zn protease [Streptococcus suis 98HAH33]
 gi|251815227|emb|CAZ50791.1| putative cell division protease FtsH [Streptococcus suis SC84]
 gi|251817126|emb|CAZ54847.1| putative cell division protease FtsH [Streptococcus suis BM407]
 gi|251819082|emb|CAR44108.1| putative cell division protease FtsH [Streptococcus suis P1/7]
 gi|292557479|gb|ADE30480.1| Peptidase M41, FtsH [Streptococcus suis GZ1]
 gi|319757187|gb|ADV69129.1| ATP-dependent Zn protease [Streptococcus suis JS14]
          Length = 657

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 190 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 247

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 248 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 299

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 300 ----GMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 355

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 356 VGRPDVKGREAILKVHAKN--KPLAADVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 413

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 414 KTVIDASD 421


>gi|222056505|ref|YP_002538867.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221565794|gb|ACM21766.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 614

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV--- 107
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL    
Sbjct: 191 RIPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQG 248

Query: 108 -DVAINIVRESRRDEV 122
              A  I+     D V
Sbjct: 249 KKSAPCIIFIDEIDAV 264


>gi|78357142|ref|YP_388591.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
 gi|78219547|gb|ABB38896.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
          Length = 760

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 21/201 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-DELMPKNILLVGPTGVGKTAIS 70
           +  +L   + GQQ A  +V  A+       +  A L   E    + L  GPTGVGKT ++
Sbjct: 451 LEEDLHSVVFGQQAAVDSVTKAI------LRSRAGLSSPERPTGSFLFYGPTGVGKTELA 504

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119
           ++LA   G  FI+ +++++ E            GYVG +   ++ + V    + V     
Sbjct: 505 KQLAATLGVSFIRFDMSEYMEKHAVARLIGAPPGYVGFDQGGLLTEAVRKTPHAV--VLL 562

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DE+ E+A  +    +L  +     T NT      +     ++      E+A  +    + 
Sbjct: 563 DEI-EKAHPDMFNILLQVMDYAKLTDNTGRKADFRNVILIMTSNAGAQEMAAKTIGFGDS 621

Query: 180 DIPGGASVGILNLSELFSKVM 200
                A+ G+  + +LFS   
Sbjct: 622 AGQDMAAKGLKAVEKLFSPEF 642


>gi|302497525|ref|XP_003010763.1| hypothetical protein ARB_03465 [Arthroderma benhamiae CBS 112371]
 gi|291174306|gb|EFE30123.1| hypothetical protein ARB_03465 [Arthroderma benhamiae CBS 112371]
          Length = 910

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +    L  ++ P+  +L GP G GKT +++  A  + 
Sbjct: 424 DVAGMDEAKVEIMEFV-SFLKRPEQFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESA 481

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 482 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 511


>gi|261346206|ref|ZP_05973850.1| ATP-dependent chaperone protein ClpB [Providencia rustigianii DSM
           4541]
 gi|282565512|gb|EFB71047.1| ATP-dependent chaperone protein ClpB [Providencia rustigianii DSM
           4541]
          Length = 857

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 562 MEQQLHQRVIGQDEAVVAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHAVSRLV 647


>gi|254995051|ref|ZP_05277241.1| ATP-dependent clp protease ATP-binding subunit (clpA) [Anaplasma
           marginale str. Mississippi]
          Length = 767

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L + I GQ  A   +  A+     R         +    + LL GPTGVGKT +
Sbjct: 460 KNLEENLKQVIFGQDAAISQIVDAI-----RIAKAGLRSHQKPLASYLLAGPTGVGKTEL 514

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
            ++LA+  G   ++ +++++ E   V R
Sbjct: 515 VKQLAKNMGMKLVRFDMSEYMESHTVAR 542


>gi|237739226|ref|ZP_04569707.1| cell division protein ftsH [Fusobacterium sp. 2_1_31]
 gi|229422834|gb|EEO37881.1| cell division protein ftsH [Fusobacterium sp. 2_1_31]
          Length = 726

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +I       + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GK
Sbjct: 277 EDISDVTFADVAGIDEAKQELKEVVDFLKEPEKFKKIGAKI-----PKGVLLLGEPGTGK 331

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V 
Sbjct: 332 TLLAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVG 390

Query: 124 EQ 125
            +
Sbjct: 391 RK 392


>gi|238487444|ref|XP_002374960.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220699839|gb|EED56178.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 640

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 340 DDIAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 397

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 398 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 428


>gi|186475703|ref|YP_001857173.1| ATP-dependent chaperone ClpB [Burkholderia phymatum STM815]
 gi|184192162|gb|ACC70127.1| ATP-dependent chaperone ClpB [Burkholderia phymatum STM815]
          Length = 865

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L + ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHQRVVGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALAAFLFDAEDHLIRIDMSEFMEKHSVAR 651


>gi|157124006|ref|XP_001654016.1| paraplegin [Aedes aegypti]
 gi|108874145|gb|EAT38370.1| paraplegin [Aedes aegypti]
          Length = 685

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G Q+AK+ V   +       R++R           +PK  LL+GP G GKT +++ 
Sbjct: 214 KDVAGLQEAKQEVMEFVDYLKAPERYQRLGA-------KVPKGALLLGPPGCGKTLLAKA 266

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    +  I+     D +
Sbjct: 267 VATEAAVPFLSMNGSEFIEMIGGLGAARVRDLFKEARKRSPCIIYIDEIDAI 318


>gi|66802530|ref|XP_635137.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60463456|gb|EAL61641.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 886

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 24/140 (17%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L   ++GQ +A  AVA A+       +  + L  E  P  + L +GPTGVGKT +++ 
Sbjct: 566 DHLHNRVVGQDEAVDAVADAV------LRSKSGLARENQPLGSFLFLGPTGVGKTELAKA 619

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           LA       +  ++++++++ E            GYVG +    + + V      V    
Sbjct: 620 LALELFDDESHMVRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSV--VL 677

Query: 119 RDEVREQASINAEERILDAL 138
            DEV E+A       +L  L
Sbjct: 678 FDEV-EKAHQQVWNVLLQVL 696


>gi|326404211|ref|YP_004284293.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
 gi|325051073|dbj|BAJ81411.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
          Length = 860

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A RAV+ A+R      +  A L+D   P  + L +GPTGVGKT   
Sbjct: 559 MEEELRKRVVGQEAALRAVSDAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTETC 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 613 KALAEFLFDDERAMVRIDMSEFMEKHAVAR 642


>gi|294816447|ref|ZP_06775090.1| chaperone [Streptomyces clavuligerus ATCC 27064]
 gi|294329046|gb|EFG10689.1| chaperone [Streptomyces clavuligerus ATCC 27064]
          Length = 860

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   +IGQ +A  AV+ A+     R+        +    + L +GPTGVGKT ++
Sbjct: 519 KLEDALHERVIGQDEAVVAVSQAV-----RRGRAGMGDPDRPTGSFLFLGPTGVGKTELA 573

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA+L        I+ ++++F E   V R V  
Sbjct: 574 KALAQLLFGDADRMIRFDMSEFQEKHTVSRLVGS 607


>gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
          Length = 974

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A    + +   L++  R + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 168 DVAGADEAVDELQEIKDFLQDPSRYEALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 223 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|225431489|ref|XP_002274730.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 848

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            GQ+  KR +   +R     ++          PK +LL GP G GKT +++ +A  AG P
Sbjct: 312 AGQEYIKRELQEIVRILKNDEEFQNK--GIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLP 369

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           F     T F E+ +VG    ++ +DL   A
Sbjct: 370 FFAANGTDFVEM-FVGVAASRV-KDLFASA 397


>gi|160892139|ref|ZP_02073142.1| hypothetical protein BACUNI_04602 [Bacteroides uniformis ATCC 8492]
 gi|317480862|ref|ZP_07939943.1| ATP-dependent chaperone ClpB [Bacteroides sp. 4_1_36]
 gi|156858617|gb|EDO52048.1| hypothetical protein BACUNI_04602 [Bacteroides uniformis ATCC 8492]
 gi|316902947|gb|EFV24820.1| ATP-dependent chaperone ClpB [Bacteroides sp. 4_1_36]
          Length = 864

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEAELHQRVIGQDEAIEAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|83717168|ref|YP_439494.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|167616072|ref|ZP_02384707.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis Bt4]
 gi|257142620|ref|ZP_05590882.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis
           E264]
 gi|83650993|gb|ABC35057.1| ATP-dependent metalloprotease, FtsH family [Burkholderia
           thailandensis E264]
          Length = 662

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|53802726|ref|YP_115493.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus
           capsulatus str. Bath]
 gi|53756487|gb|AAU90778.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus
           capsulatus str. Bath]
          Length = 859

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L R ++GQQ+A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEENLSRRVVGQQEAITAVANAIR------RSRAGLADPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDTDEAMVRIDMSEFMEKHSVAR 645


>gi|67517159|ref|XP_658462.1| hypothetical protein AN0858.2 [Aspergillus nidulans FGSC A4]
 gi|40746532|gb|EAA65688.1| hypothetical protein AN0858.2 [Aspergillus nidulans FGSC A4]
 gi|259488857|tpe|CBF88645.1| TPA: heat shock protein (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 927

 Score = 59.9 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 20/103 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L + ++GQ++A ++++ A+R         + L +   P + L  GP+G GKT ++
Sbjct: 593 EMEKHLGKIVVGQREAVKSISDAIR------LQRSGLSNPNSPPSFLFCGPSGTGKTLLT 646

Query: 71  RRLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNV 99
           + LA      P   I+ +++++ E            GYVG + 
Sbjct: 647 KALAEFLFDDPKSMIRFDMSEYQERHSLSRMIGAPPGYVGHDA 689


>gi|300113088|ref|YP_003759663.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299539025|gb|ADJ27342.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 640

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 98/264 (37%), Gaps = 35/264 (13%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AKR +   +        + P   +     +PK ILLVG  G GKT ++R +A
Sbjct: 182 EDVAGVENAKRDLREIVDY-----LKEPGQFKAVGAKIPKGILLVGRPGTGKTLLARAVA 236

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  + F E+ +VG     V  + +   + A +I+     D V R +     
Sbjct: 237 GEAGVPFYSISGSDFIEM-FVGVGAARVRDMFKAAKEEAPSILFIDEIDSVGRARGTGLG 295

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      +IL  + G  A          N  +V    L      D+++ +++ D  
Sbjct: 296 GGHDEREQTLNQILGEMDGFAAHENVVVLAATNRPDVLDPALLRPGRFDRKVVLDLPDKK 355

Query: 174 SDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD- 231
           +     ++         ++  E  ++         +   V +    L   E  + +DMD 
Sbjct: 356 ARQRVLEVHTKNVPLAADVDLEQVARRTVGFSGADLANLVNEAA-LLTGRERKKQVDMDM 414

Query: 232 -TVHRDSIQMVENYGIVFLDEFDK 254
             + RD I +        L E DK
Sbjct: 415 FNLARDKIVLGAE-RETILGEEDK 437


>gi|195998261|ref|XP_002108999.1| hypothetical protein TRIADDRAFT_20129 [Trichoplax adhaerens]
 gi|190589775|gb|EDV29797.1| hypothetical protein TRIADDRAFT_20129 [Trichoplax adhaerens]
          Length = 458

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 27/183 (14%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G Q+AK+ ++  ++   +  Q   +L   + PK  LL GP G GKT +++ +A  +  
Sbjct: 4   VAGMQEAKQEISEFVQY-LKSPQKFKELGARI-PKGALLTGPPGTGKTLLAKAVANESQV 61

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDV---------------AINIVRESRRDEVRE 124
           PF+ +  + F E+ + G    ++ RDL                  AI   R SR D +  
Sbjct: 62  PFLSMAGSDFVEV-FAGVGAARV-RDLFKQARGRSPCIIYVDEVDAIGRARRSRHDSIPI 119

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             + N   ++L  + G          A++N  ++  + L      D+ I I++   S  I
Sbjct: 120 FYTENTLNQLLVEMDGMQSLDGVIVLASTNRVDILDEALLRPGRFDRTITIDLPTMSERI 179

Query: 177 SNF 179
             F
Sbjct: 180 DIF 182


>gi|189188018|ref|XP_001930348.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187971954|gb|EDU39453.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 877

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK+ +   +   ++  R Q+L A +     P+  +L G  G GKT +++  A 
Sbjct: 389 DVAGMDEAKQEIMEFVSFLKDPSRFQKLGAKI-----PRGAILSGSPGTGKTLLAKATAG 443

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +G PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 444 ESGVPFFSVSGSEFVEM-FVGVGASRV-RDLFANA 476


>gi|209883928|ref|YP_002287785.1| ATP-dependent chaperone ClpB [Oligotropha carboxidovorans OM5]
 gi|209872124|gb|ACI91920.1| ATP-dependent chaperone ClpB [Oligotropha carboxidovorans OM5]
          Length = 877

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 562 MEEMLGQRVIGQAQAVRAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 616 KALAEYLFDDETALVRMDMSEYMEKHSVAR 645


>gi|169351461|ref|ZP_02868399.1| hypothetical protein CLOSPI_02241 [Clostridium spiroforme DSM 1552]
 gi|169291683|gb|EDS73816.1| hypothetical protein CLOSPI_02241 [Clostridium spiroforme DSM 1552]
          Length = 648

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  Q+ A +     PK +LLVGP G GKT ++R ++  A  P+  +  ++F E+ 
Sbjct: 188 LKNPKKFAQMGARI-----PKGVLLVGPPGTGKTLLARAVSGEASVPYYSISGSEFVEM- 241

Query: 94  YVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +VG     V  + +     A  I+     D V
Sbjct: 242 FVGVGAGRVRDMFKKAKQTAPCIIFIDEIDAV 273


>gi|148260817|ref|YP_001234944.1| ATPase [Acidiphilium cryptum JF-5]
 gi|146402498|gb|ABQ31025.1| ATPase AAA-2 domain protein [Acidiphilium cryptum JF-5]
          Length = 860

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A RAV+ A+R      +  A L+D   P  + L +GPTGVGKT   
Sbjct: 559 MEEELRKRVVGQEAALRAVSDAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTETC 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 613 KALAEFLFDDERAMVRIDMSEFMEKHAVAR 642


>gi|302338331|ref|YP_003803537.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
 gi|301635516|gb|ADK80943.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
          Length = 647

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + GQ +AK     V   L+N  +  ++ A +     PK +LLVG  G GKT +++ +A
Sbjct: 176 NDVAGQSEAKFELEEVVDFLKNPTKFTKIGAKI-----PKGVLLVGMPGTGKTLLAKAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
             AG  F  +  + F E+ +VG    ++ RDL + 
Sbjct: 231 GEAGVAFFHMSGSDFVEM-FVGVGASRV-RDLFEQ 263


>gi|290998117|ref|XP_002681627.1| predicted protein [Naegleria gruberi]
 gi|284095252|gb|EFC48883.1| predicted protein [Naegleria gruberi]
          Length = 277

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 18/223 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK++V  A+     R  L   LR    PK +LL GP G GKT I + +A  +
Sbjct: 5   DDIAGLAYAKKSVQEAVIWPLMRPDLFTGLRKP--PKGLLLFGPPGTGKTLIGKAIAHES 62

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
           G+ F  +  +  T   +VG   E++++ L  +A                 I+  + +L  
Sbjct: 63  GSTFFSISASSLT-SKWVGEG-EKLVKTLFSLARYFQPSVVF--------IDEIDSLLSQ 112

Query: 138 LVGKTATSNTRE---VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE 194
                A + +R     F  +L     +D +  I +   ++     D      +G      
Sbjct: 113 RSDGDADNGSRRLKTEFLVQLDGASTNDDQDRILIVGATNRPEEIDEAVRRRMGKRLYIP 172

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
           L SK    GRK+     + K    L  +E ++L+++   +  S
Sbjct: 173 LPSK---EGRKEMFLRLLAKNPNTLSDEEMEKLVELTDGYSGS 212


>gi|255526223|ref|ZP_05393141.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510063|gb|EET86385.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 592

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 118/321 (36%), Gaps = 47/321 (14%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           I G ++AK +V   + +  +R           MPK ++L G  G GKT +++ +A  AG 
Sbjct: 152 IAGNEEAKESVKDLV-DFLKRPDKYTSYGA-RMPKGVILYGEPGTGKTLLAKAVAGEAGV 209

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR-----------RDEVREQASI 128
           PF  V  + F ++ YVG    +I R L   A N                 +     ++S 
Sbjct: 210 PFYAVSGSDFIQV-YVGVGASRI-RQLFKKARNNSTGKAVIFIDEIDAIGKKRDSGKSSG 267

Query: 129 NAEER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
            ++ER      +L  + G             N  ++    L      D+ I+I + D S+
Sbjct: 268 GSDERDQTLNALLTEMSGFNEKEGIIIMAATNRLDMLDPALLRPGRFDRHIEIMLPDISA 327

Query: 175 DISNFDIP-GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                D+      +G +N+ E   K       K I   V +      ++ S  + D+   
Sbjct: 328 REKILDLHLKNKPIGNINIKEWAQKTSYFSGAK-IENLVNEAAILACKENSKNINDLHLD 386

Query: 234 HRDSIQMV--ENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290
              SI +   E     ++ + D KI A        VS        L ++   +VS     
Sbjct: 387 KAFSIVLAGHEKKNRDYIKDIDRKITAYHEAGHALVS--------LKVLPNETVSKITII 438

Query: 291 INTDHILFIASGAFHVSRPAD 311
            +T       +G + +S P D
Sbjct: 439 PSTKG-----AGGYTLSIPED 454


>gi|222634891|gb|EEE65023.1| hypothetical protein OsJ_19991 [Oryza sativa Japonica Group]
          Length = 405

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 133 EDVAGLDKAKQALMEMVILPTKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 190

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VA++  
Sbjct: 191 EATFFNVSASSLT-SKWVGE-AEKLVRTLFMVAVDRQ 225


>gi|167577949|ref|ZP_02370823.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 662

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|158288670|ref|XP_310523.4| AGAP000560-PA [Anopheles gambiae str. PEST]
 gi|157018680|gb|EAA06300.4| AGAP000560-PA [Anopheles gambiae str. PEST]
          Length = 727

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           R + G Q+AK+ V   +       R++R           +PK  LL+GP G GKT +++ 
Sbjct: 253 RDVAGLQEAKQEVMEFVDYLKSPGRYQRLGA-------KVPKGALLLGPPGCGKTLLAKA 305

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           +A  A  PF+ +  ++F E+  G     V  + ++    +  I+     D +  Q  
Sbjct: 306 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEAKKRSPCIIYVDEIDAIGRQRE 362


>gi|156550903|ref|XP_001602630.1| PREDICTED: similar to aaa atpase [Nasonia vitripennis]
          Length = 550

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 10  REIVSELD-----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64
           +EIV   +       I G + AKR +   +     R  +   LR    PK ILL GP G 
Sbjct: 260 KEIVETEEIPITWDDIAGLEHAKRIIKEIVVFPMLRPDIFTGLRRP--PKGILLFGPPGT 317

Query: 65  GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GKT I + +A  + + F  +  +  T   +VG   E+++R L  VA
Sbjct: 318 GKTLIGKCIASQSKSTFFSISASSLT-SKWVGEG-EKMVRALFAVA 361


>gi|154345946|ref|XP_001568910.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066252|emb|CAM44042.1| putative mitochondrial ATP-dependent zinc metallopeptidase
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 533

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  +   L   L     PK  LL GP G GKT +++ +A+ 
Sbjct: 63  IRGCDEAKKELEEIVEFLKDPEKFYNLGGRL-----PKGALLTGPPGCGKTMLAKAIAKE 117

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ +VG    ++ R+L   A          +    A I  +E  +D
Sbjct: 118 AGVSFFYATGSEFDEM-FVGVGARRV-RELFAAA----------KANSPALIFIDE--VD 163

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           AL G   ++  S +R    + L + +  D +  + V   ++     D
Sbjct: 164 ALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDDAVIVLAATNTPETLD 210


>gi|78189445|ref|YP_379783.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78171644|gb|ABB28740.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 863

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 33/230 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L R +IGQ++A   +  A+      Q+  A L+D + P  + + +GPTGVGKT ++
Sbjct: 533 MEADLKREVIGQEEAITKITRAI------QRTRAGLKDPMRPIGSFIFLGPTGVGKTELA 586

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           + L R         I+ +++++ E   V R V      +       + E  R +      
Sbjct: 587 KALTRYMFDTEDALIRADMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 646

Query: 124 ----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +    +L  L     T           R  +  +  I +     + DI NF
Sbjct: 647 IDEIEKAHPDVFNILLQVLDEGILTDG-------MGRKVDFRNTIIIMTSNIGARDIRNF 699

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               G     ++          +G  K ++ +++     +   E    ID
Sbjct: 700 SAGAGMGFAPIDDG--------TGNYKAMKSTIEDALKRVFNPEFLNRID 741


>gi|399265|sp|P17422|CLPB_DICNO RecName: Full=Chaperone protein ClpB
          Length = 860

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L+  ++GQ+ A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 567 LETVLNERVVGQKTAVEAVANAIR------RNRAGLSDPKRPIGSFLFLGPTGVGKTELC 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA+         +++++++F E            GYVG +    + + V      V  
Sbjct: 621 RTLAQFLFDSEENMVRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSV-- 678

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 679 VLFDEV-EKAHSDVFNTLLQVL 699


>gi|58697295|ref|ZP_00372662.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536343|gb|EAL59819.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 377

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 18/101 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + + L++ I GQ+ A  ++  +++         + LR+   P  N L  GPTGVGKT 
Sbjct: 79  KSLKANLEKVIFGQEQAIESLVNSIK------IAKSGLRNYNKPLANYLFAGPTGVGKTE 132

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA   G   I+ +++++ E            GYVG +
Sbjct: 133 LAKQLAESMGMNLIRFDMSEYIESHTISRMIGSPPGYVGYD 173


>gi|319442003|ref|ZP_07991159.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Corynebacterium variabile DSM 44702]
          Length = 856

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ+DA  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEQVLGGRVVGQKDAVTAVSDAV-----RRSRAGVADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 621 SLAEFLFDDDHAMVRIDMSEYGEKHSVARLVGAPPGYVGYDAGGQLTEAVRRR 673



 Score = 39.5 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V  +SL+    + I+       + Q  E +    + L  TE +   LA+ 
Sbjct: 743 PEFINRLDDVVIFESLSAEQLKSIV----EIQVRQLAERLAARRLDLQVTEAAKSWLAER 798

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDI----SFSASDLQEKTVVIDAEYVRLHIGDFP 427
                      GAR L+ ++++ + D       +       TV +D   V  H+    
Sbjct: 799 GYE-----PAYGARPLRRLIQKAIGDALAKKLLAGEVRDGDTVQVD---VDPHLDSLV 848


>gi|315161583|gb|EFU05600.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0645]
          Length = 868

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|313899836|ref|ZP_07833339.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312955451|gb|EFR37116.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 674

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   
Sbjct: 194 RIPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASRVRDMFKKAQ 252

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 253 QTAPCIVFIDEIDAV 267


>gi|291243014|ref|XP_002741400.1| PREDICTED: YME1-like 1-like [Saccoglossus kowalevskii]
          Length = 680

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK   + V   L++  +   L   L     PK +LLVGP G GKT ++R +A
Sbjct: 261 DDVQGVEEAKQELKDVVSFLQDPEKYTSLGGKL-----PKGVLLVGPPGTGKTLLARAVA 315

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF     ++F  + +VG    ++ RDL   A
Sbjct: 316 GEADVPFFYASGSEFDNM-FVGSGARRV-RDLFAEA 349


>gi|270296241|ref|ZP_06202441.1| ATP-dependent chaperone ClpB [Bacteroides sp. D20]
 gi|270273645|gb|EFA19507.1| ATP-dependent chaperone ClpB [Bacteroides sp. D20]
          Length = 864

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEAELHQRVIGQDEAIEAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|262279691|ref|ZP_06057476.1| ATP-dependent chaperone ClpB [Acinetobacter calcoaceticus RUH2202]
 gi|262260042|gb|EEY78775.1| ATP-dependent chaperone ClpB [Acinetobacter calcoaceticus RUH2202]
          Length = 859

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 560 MEGFLHDRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 614 KALANFLFDSDDAMIRIDMSEFMEKHSVSRLV 645


>gi|294936741|ref|XP_002781856.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
 gi|239892914|gb|EER13651.1| cell division protein FtsH, putative [Perkinsus marinus ATCC 50983]
          Length = 608

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G   AK+ V   +   R   + + L A +     PK  LLVGP G GKT +++ +A 
Sbjct: 73  DVAGLTQAKQEVVEFVDFLREPSKFEHLGARI-----PKGGLLVGPPGTGKTLLAKAVAG 127

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            +G PF  +  + F E+ +VG     V  +       A +I+     D V  +
Sbjct: 128 ESGVPFFSMSGSDFIEM-FVGVGPSRVRDLFAQARQAAPSIIFIDEIDAVGRK 179


>gi|229488549|ref|ZP_04382415.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
 gi|229324053|gb|EEN89808.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
          Length = 807

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL   +IGQ DA RA+A A+     R+        +    + L +GPTGVGKT +
Sbjct: 502 RRLEEELHGRVIGQDDAVRAIARAV-----RRSRTGMSDPDRPVGSFLFLGPTGVGKTEL 556

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++ ++++F E   V R V
Sbjct: 557 AKALAATLFGDENKMLRFDMSEFGERHTVSRLV 589



 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 28/176 (15%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y ++ LDE +K         +   D G         V      ++  S++ +   S  +
Sbjct: 612 PYSVILLDEIEKAHPDVFNTLLQVLDDGRLTDGQGRTVDFKNTVVIMTSNLGSDIISSKS 671

Query: 294 DHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
             + F    A    +P            + PE   R    V  + L+      I      
Sbjct: 672 GGLGFTTGDAESAEKPLRDRVMARLRESMRPEFLNRIDEIVIFRKLDTEQLHRIT----D 727

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            L+   ++ ++++GI ++FT D++D +A+     +    + GAR L+  ++RV++D
Sbjct: 728 LLLDDSRKRLQSKGIEIEFTADAVDWIAE-----HGHQPEFGARPLRRSIQRVVDD 778


>gi|291287208|ref|YP_003504024.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884368|gb|ADD68068.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM
           12809]
          Length = 619

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV-- 109
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL +   
Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQGK 244

Query: 110 --AINIVRESRRDEV 122
             A  I+     D V
Sbjct: 245 KNAPCIIFVDEIDAV 259


>gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
 gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
          Length = 581

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 307 DDIAGQHAAKQALQEMVILPSLRPELFTGLRTP--SRGLLLFGPPGNGKTLLARAVASEC 364

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 365 NATFFSISAASLT-SKYVGEG-EKLVRALFAVA 395


>gi|156065085|ref|XP_001598464.1| hypothetical protein SS1G_00553 [Sclerotinia sclerotiorum 1980]
 gi|154691412|gb|EDN91150.1| hypothetical protein SS1G_00553 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 899

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +AK  +   +       + P   +     +P+  +L GP G GKT +++  A 
Sbjct: 417 KDVAGMDEAKLEIMEFV----SFLKTPEQFQRLGAKIPRGAILSGPPGTGKTLLAKATAG 472

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  V  ++F E+ +VG    ++ RDL  +A
Sbjct: 473 ESQVPFFSVSGSEFVEM-FVGVGASRV-RDLFAMA 505


>gi|332671844|ref|YP_004454852.1| ATPase AAA-2 domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332340882|gb|AEE47465.1| ATPase AAA-2 domain protein [Cellulomonas fimi ATCC 484]
          Length = 860

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ  A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEDELHKRVVGQDAAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F+E   V R
Sbjct: 560 KALAEFLFGDEDALIQLDMSEFSEKHTVSR 589


>gi|330969644|gb|EGH69710.1| peptidase M41, FtsH [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 634

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     +   LR+  + Q+L   +     P+ +L+VGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEEVGELVEFLRDPGKFQRLGGRI-----PRGVLMVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A   F  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 210 EAKVLFFTISGSDFVEM-FVGVGASRV-RDMFEQAKKH 245


>gi|317493980|ref|ZP_07952397.1| ATP-dependent chaperone ClpB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918307|gb|EFV39649.1| ATP-dependent chaperone ClpB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 857

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDDLHERVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 665

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+   +  +L A +     PK +LL GP G GKT +++ +A 
Sbjct: 162 DVAGADEAKQELEEVVEFLKTPDKFNELGARI-----PKGVLLFGPPGTGKTLLAKAVAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 217 EAGVQFFTISGSDFVEM-FVGVGASRV-RDLFDQA 249


>gi|309778160|ref|ZP_07673095.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914069|gb|EFP59874.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 674

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   
Sbjct: 194 RIPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASRVRDMFKKAQ 252

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 253 QTAPCIVFIDEIDAV 267


>gi|254561541|ref|YP_003068636.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
 gi|254268819|emb|CAX24780.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
          Length = 874

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALAKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|226308209|ref|YP_002768169.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           erythropolis PR4]
 gi|226187326|dbj|BAH35430.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Rhodococcus erythropolis PR4]
          Length = 807

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL   +IGQ DA RA+A A+     R+        +    + L +GPTGVGKT +
Sbjct: 502 RRLEEELHGRVIGQDDAVRAIARAV-----RRSRTGMSDPDRPVGSFLFLGPTGVGKTEL 556

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++ ++++F E   V R V
Sbjct: 557 AKALAATLFGDENKMLRFDMSEFGERHTVSRLV 589



 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 28/176 (15%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y ++ LDE +K         +   D G         V      ++  S++ +   S  +
Sbjct: 612 PYSVILLDEIEKAHPDVFNTLLQVLDDGRLTDGQGRTVDFKNTVVIMTSNLGSDIISSKS 671

Query: 294 DHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
             + F    A    +P            + PE   R    V  + L+      I      
Sbjct: 672 GGLGFTTGDAESAEKPLRDRVMARLRESMRPEFLNRIDEIVIFRKLDTEQLHRIT----D 727

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            L+   ++ ++++GI ++FT D++D +A+     +    + GAR L+  ++RV++D
Sbjct: 728 LLLDDSRKRLQSKGIDIEFTADAVDWIAE-----HGHQPEFGARPLRRSIQRVVDD 778


>gi|215408559|emb|CAR31129.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RTLFKEA 116


>gi|195037092|ref|XP_001989999.1| GH18484 [Drosophila grimshawi]
 gi|229559926|sp|B4JII0|SPAST_DROGR RecName: Full=Spastin
 gi|193894195|gb|EDV93061.1| GH18484 [Drosophila grimshawi]
          Length = 782

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 508 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 565

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 566 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 599


>gi|218530577|ref|YP_002421393.1| ATP-dependent chaperone ClpB [Methylobacterium chloromethanicum
           CM4]
 gi|218522880|gb|ACK83465.1| ATP-dependent chaperone ClpB [Methylobacterium chloromethanicum
           CM4]
          Length = 874

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALAKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|146329388|ref|YP_001209038.1| ATP-dependent protease ClpB [Dichelobacter nodosus VCS1703A]
 gi|146232858|gb|ABQ13836.1| ATP-dependent protease ClpB [Dichelobacter nodosus VCS1703A]
          Length = 857

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L+  ++GQ+ A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 564 LETVLNERVVGQKTAVEAVANAIR------RNRAGLSDPKRPIGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA+         +++++++F E            GYVG +    + + V      V  
Sbjct: 618 RTLAQFLFDSEENMVRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSV-- 675

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 676 VLFDEV-EKAHSDVFNTLLQVL 696


>gi|237729507|ref|ZP_04559988.1| disaggregation chaperone [Citrobacter sp. 30_2]
 gi|226908113|gb|EEH94031.1| disaggregation chaperone [Citrobacter sp. 30_2]
          Length = 861

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|123966164|ref|YP_001011245.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
 gi|123200530|gb|ABM72138.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
          Length = 584

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 13  VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAIS 70
           V      + G  +A   +   +    +    P    D    +PK +LL+GP G GKT ++
Sbjct: 130 VDTRFDDVAGVPEAAEELKEVI----KFLNEPKRFTDLGAKVPKGVLLIGPPGTGKTLLA 185

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + +A  +G PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 186 KAIAGESGVPFLSIAASEFVEL-FVGVGASRV-RDLFVKA 223


>gi|110804884|ref|YP_688404.1| ATP-dependent Clp protease ATP-binding subunit [Shigella flexneri 5
           str. 8401]
 gi|110614432|gb|ABF03099.1| ATP-binding component of serine protease [Shigella flexneri 5 str.
           8401]
          Length = 758

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLSDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|90415921|ref|ZP_01223854.1| hypothetical protein GB2207_01772 [marine gamma proteobacterium
           HTCC2207]
 gi|90332295|gb|EAS47492.1| hypothetical protein GB2207_01772 [marine gamma proteobacterium
           HTCC2207]
          Length = 758

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   + GQ  A   +  +++         A LR+   P  + L  GPTGVGKT +S
Sbjct: 457 LSEKLKMVVFGQDPAIDVLTTSIK------MARAGLREGTKPIGSFLFAGPTGVGKTEVS 510

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRR 119
           R+LA + G   ++ +++++ E            GYVG +   ++ D V+   + +     
Sbjct: 511 RQLANILGVNLMRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVNKHPHSI--VLL 568

Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           DEV E+A  +    +L  +   T T N         R  +  +  I +     +  +S  
Sbjct: 569 DEV-EKAHPDVFNLLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAELMSRS 620

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215
            +         +  E   K+     + ++   VQ  
Sbjct: 621 SMGFAQQDHRTDGMEAIKKMFTPEFRNRLDSIVQFA 656


>gi|326477790|gb|EGE01800.1| paraplegin [Trichophyton equinum CBS 127.97]
          Length = 914

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +    L  ++ P+  +L GP G GKT +++  A  + 
Sbjct: 427 DVAGMDEAKVEIMEFV-SFLKRPEQFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESA 484

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 485 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 514


>gi|323967318|gb|EGB62741.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli M863]
 gi|323976731|gb|EGB71819.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TW10509]
 gi|327253670|gb|EGE65299.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli STEC_7v]
          Length = 758

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLSDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|291086328|ref|ZP_06355437.2| ATP-dependent chaperone protein ClpB [Citrobacter youngae ATCC
           29220]
 gi|291068913|gb|EFE07022.1| ATP-dependent chaperone protein ClpB [Citrobacter youngae ATCC
           29220]
          Length = 861

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|269215020|ref|ZP_06158987.1| chaperone protein ClpB [Neisseria lactamica ATCC 23970]
 gi|269208504|gb|EEZ74959.1| chaperone protein ClpB [Neisseria lactamica ATCC 23970]
          Length = 419

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 125 KMEEVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 178

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 179 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 209


>gi|212542977|ref|XP_002151643.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Penicillium marneffei ATCC 18224]
 gi|210066550|gb|EEA20643.1| mitochondrial inner membrane AAA protease Yta12, putative
           [Penicillium marneffei ATCC 18224]
          Length = 898

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +  +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 419 DVAGMDEAKMEIMEFV-SFLKEAEKFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESG 476

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 477 VPFFSVSGSEFVEM-FVGVGPSRV-RDLFANA 506


>gi|254458809|ref|ZP_05072233.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Campylobacterales bacterium GD 1]
 gi|207084575|gb|EDZ61863.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Campylobacterales bacterium GD 1]
          Length = 730

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S+L + +IGQ  A   V+ A++                   + L  GPTGVGKT ++ 
Sbjct: 433 LESDLKQKVIGQDAAVMEVSKAIK-----ISKAGLTPQNKPIASFLFSGPTGVGKTELAI 487

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            L++  G  F + +++++ E            GYVG     ++ + +      
Sbjct: 488 SLSQTLGVNFERFDMSEYMEKHALSRLVGAPPGYVGFEQGGLLTEAIKKHPYT 540


>gi|163851769|ref|YP_001639812.1| ATP-dependent chaperone ClpB [Methylobacterium extorquens PA1]
 gi|240138934|ref|YP_002963409.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
 gi|163663374|gb|ABY30741.1| ATP-dependent chaperone ClpB [Methylobacterium extorquens PA1]
 gi|240008906|gb|ACS40132.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
          Length = 874

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALAKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|169843976|ref|XP_001828710.1| heat shock protein [Coprinopsis cinerea okayama7#130]
 gi|116510210|gb|EAU93105.1| heat shock protein [Coprinopsis cinerea okayama7#130]
          Length = 908

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQQDA ++VA A+     R              + L+ GP+G GKT +++
Sbjct: 584 MEKILSESVIGQQDAVKSVANAI-----RLSRSGLSNPNRPIASFLMAGPSGTGKTLMAK 638

Query: 72  RLARLA-GAP--FIKVEVTKFTEI-----------GYVGRN 98
            LA +   +P   I+++ ++++E            GYVG +
Sbjct: 639 TLATILFDSPDAMIRIDASEYSEKHSISRLIGSPPGYVGYD 679


>gi|327406003|ref|YP_004346841.1| ATP-dependent chaperone ClpB [Fluviicola taffensis DSM 16823]
 gi|327321511|gb|AEA46003.1| ATP-dependent chaperone ClpB [Fluviicola taffensis DSM 16823]
          Length = 870

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ++A  A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 560 LEDELGKRVVGQEEAIEAISDAVR------RSRAGLQDMRKPIGSFIFLGPTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFNDENAMTRIDMSEYQEKHSVSRLV 645


>gi|326793262|ref|YP_004311083.1| ATPase AAA [Clostridium lentocellum DSM 5427]
 gi|326544026|gb|ADZ85885.1| ATPase AAA-2 domain protein [Clostridium lentocellum DSM 5427]
          Length = 737

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + + GQ  A   V ++++                   ++L VGPTGVGKT I+
Sbjct: 442 QLEQNLKKQVFGQDKAIEQVVMSIK-----LSRAGLSEMNKPIASLLFVGPTGVGKTEIA 496

Query: 71  RRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           + LA   G   I+ +++++TE            GY+G     ++ D +  +   
Sbjct: 497 KCLANELGIKLIRFDMSEYTEKHTASKLIGSPPGYIGYEEGGLLTDAIRKSPYC 550


>gi|295096411|emb|CBK85501.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 759

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R + + L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 449 TLRTLGNRLKMLVFGQDKAIEALTEAIK-----MARAGLGHDHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++ +L++  G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 504 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHA 560

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 591


>gi|260440924|ref|ZP_05794740.1| ClpA [Neisseria gonorrhoeae DGI2]
 gi|291044247|ref|ZP_06569956.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           gonorrhoeae DGI2]
 gi|291011141|gb|EFE03137.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           gonorrhoeae DGI2]
          Length = 763

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|240115258|ref|ZP_04729320.1| ClpA [Neisseria gonorrhoeae PID18]
 gi|268600941|ref|ZP_06135108.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID18]
 gi|268585072|gb|EEZ49748.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID18]
          Length = 763

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|159043170|ref|YP_001531964.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12]
 gi|157910930|gb|ABV92363.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12]
          Length = 871

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  E+ R +IGQ+ A  AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEEEIGRRVIGQKTAVNAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  +++++++F E   V R
Sbjct: 614 KAVAEFLFDDDSAMVRIDMSEFMEKHAVAR 643


>gi|221135104|ref|ZP_03561407.1| ATPase AAA-2 [Glaciecola sp. HTCC2999]
          Length = 859

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A + V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 METVLHDRVIGQDEAVKCVSNAIR------RSRAGLADPAKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLADFLFDSQDSMVRIDMSEFMEKHSVARLV 647


>gi|59800851|ref|YP_207563.1| hypothetical protein NGO0408 [Neisseria gonorrhoeae FA 1090]
 gi|194098151|ref|YP_002001199.1| ClpA [Neisseria gonorrhoeae NCCP11945]
 gi|240013725|ref|ZP_04720638.1| ClpA [Neisseria gonorrhoeae DGI18]
 gi|240016163|ref|ZP_04722703.1| ClpA [Neisseria gonorrhoeae FA6140]
 gi|240120795|ref|ZP_04733757.1| ClpA [Neisseria gonorrhoeae PID24-1]
 gi|240125351|ref|ZP_04738237.1| ClpA [Neisseria gonorrhoeae SK-92-679]
 gi|268683955|ref|ZP_06150817.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-92-679]
 gi|293399444|ref|ZP_06643597.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           gonorrhoeae F62]
 gi|59717746|gb|AAW89151.1| putative ATP-dependent C1p protease [Neisseria gonorrhoeae FA 1090]
 gi|193933441|gb|ACF29265.1| ClpA [Neisseria gonorrhoeae NCCP11945]
 gi|268624239|gb|EEZ56639.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-92-679]
 gi|291610013|gb|EFF39135.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           gonorrhoeae F62]
          Length = 763

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|330720215|gb|EGG98592.1| Cell division protein FtsH [gamma proteobacterium IMCC2047]
          Length = 519

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G + AK+    V   L++  + Q+L A +     PK IL++G  G GKT +++  A
Sbjct: 70  DDVAGLESAKQDLQEVVDYLKSPTKFQRLGAKM-----PKGILMMGAPGTGKTLLAKAPA 124

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             A  PF  +  ++F E+ YVG     V  +  +    A +++     D V
Sbjct: 125 AEAEVPFFSISGSEFIEL-YVGVGASRVRDMFANARKEAPSLIFIDEIDSV 174


>gi|317051276|ref|YP_004112392.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurispirillum indicum S5]
 gi|316946360|gb|ADU65836.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Desulfurispirillum indicum S5]
          Length = 747

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 108/271 (39%), Gaps = 36/271 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTA 68
           R +  ++ R I GQ +A   ++ ++    +R +  A L +   P    L  GPTGVGKT 
Sbjct: 453 RTLEEDMLRRIFGQGNAITQLSRSI----KRSR--AGLGNPRKPMGSFLFTGPTGVGKTE 506

Query: 69  ISRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
           +SR+LA L G  F + +++++ E            GYVG     ++ + +    + V   
Sbjct: 507 VSRQLAELLGVHFQRFDMSEYMEKHAVARLIGSPPGYVGFEQGGLLTETIRRHPHCVL-- 564

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV E+A  +    +L  +   T T NT          G  +D    I +  ++  ++
Sbjct: 565 LLDEV-EKAHQDIMNILLQVMDHATLTDNT----------GATADFRNVILIMTSNCGVT 613

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                G  S      ++   +      + ++   +   +  L +    R++D   +   S
Sbjct: 614 EPASLGFGSSLQPRAADAVERFFSPEFRNRLDAMI--AFAPLDQSVMRRIVDK-FIAELS 670

Query: 238 IQMVENYGIVFLDE--FDKIVARDSGNGIGV 266
           IQ+ E    + + E   D +  +      G 
Sbjct: 671 IQLEEKNVSIAISEKAADFLARKGYSPKFGA 701


>gi|261339215|ref|ZP_05967073.1| hypothetical protein ENTCAN_05443 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319064|gb|EFC58002.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Enterobacter
           cancerogenus ATCC 35316]
          Length = 759

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R + + L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 449 TLRTLGNRLKMLVFGQDKAIEALTEAIK-----MARAGLGHDHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++ +L++  G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 504 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHA 560

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 591


>gi|119386719|ref|YP_917774.1| ATPase [Paracoccus denitrificans PD1222]
 gi|119377314|gb|ABL72078.1| ATPase AAA-2 domain protein [Paracoccus denitrificans PD1222]
          Length = 953

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ  A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 593 QMEERLHQRVIGQDRAIEAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 647

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 648 KALAEVIFGDEDAVIRIDMSEYMERHAVARLIGAPPGYVGYD 689


>gi|326474801|gb|EGD98810.1| mitochondrial inner membrane AAA protease Yta12 [Trichophyton
           tonsurans CBS 112818]
          Length = 911

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  +AK  +   + +  +R +    L  ++ P+  +L GP G GKT +++  A  + 
Sbjct: 424 DVAGMDEAKVEIMEFV-SFLKRPEQFQRLGAKI-PRGAILSGPPGTGKTLLAKATAGESA 481

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 482 VPFYSVSGSEFVEM-FVGVGPSRV-RDLFATA 511


>gi|307822845|ref|ZP_07653076.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
 gi|307736449|gb|EFO07295.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum
           SV96]
          Length = 650

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK+ +  +   LR   + Q+L   +     PK +L+VGP G GKT ++R ++
Sbjct: 207 DDVAGADSAKQELNESIDFLRTPEKFQKLGGRM-----PKGVLIVGPPGTGKTLLARAVS 261

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PF  +  ++F E+ +VG    ++ R+L + A N 
Sbjct: 262 GEAQVPFFNISGSEFIEL-FVGVGAARV-RELFEQARNQ 298


>gi|296082282|emb|CBI21287.3| unnamed protein product [Vitis vinifera]
          Length = 551

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 29/114 (25%)

Query: 1   MKL-TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58
           MKL     +PRE        IIGQ DA +A+  ALR      +  A +RD   P  + L 
Sbjct: 273 MKLVDMEETPRE-------SIIGQDDAVKAICRALR------RDGAGIRDPTRPIASFLF 319

Query: 59  VGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI-----------GYVGRN 98
            GPTGVGKT +++ +A     +    ++++++++ E            GYVG +
Sbjct: 320 TGPTGVGKTELAKLIALEYFGSKEAMVRIDMSEYMEKHTVSRLCGSPPGYVGHD 373


>gi|254558918|ref|YP_003066013.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
 gi|254266196|emb|CAX21953.1| protein disaggregation chaperone [Methylobacterium extorquens DM4]
          Length = 874

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALAKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|227501997|ref|ZP_03932046.1| endopeptidase Clp [Corynebacterium accolens ATCC 49725]
 gi|227077281|gb|EEI15244.1| endopeptidase Clp [Corynebacterium accolens ATCC 49725]
          Length = 851

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGERVVGQREAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 620 ALADFLFDDESAMVRIDMSEYGEKHSVSRLVGAPPGYVGHEAGGQLTEAVRRR 672


>gi|157737374|ref|YP_001490057.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157699228|gb|ABV67388.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 490

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 21/128 (16%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           REI  EL+            +   L N  +  +    L     PK +LLVGP GVGKT I
Sbjct: 119 REIKEELEE-----------IVDFLNNPNKYLKYGVKL-----PKGVLLVGPPGVGKTLI 162

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQ 125
           +R +A  A  PF       F  I YVG     V ++       A +IV     D V + +
Sbjct: 163 ARAVAGEADVPFFYQSGASFVHI-YVGMGAKKVRELFAKAKQSAPSIVFIDEIDAVGKMR 221

Query: 126 ASINAEER 133
           +  + +ER
Sbjct: 222 SGKSNDER 229


>gi|46199430|ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55981461|ref|YP_144758.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|81363931|sp|Q5SI82|FTSH_THET8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46197056|gb|AAS81470.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55772874|dbj|BAD71315.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 624

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F
Sbjct: 171 IVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 225

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 226 VEM-FVGVGAARV-RDLFETAKRH 247


>gi|114330749|ref|YP_746971.1| ATPase [Nitrosomonas eutropha C91]
 gi|114307763|gb|ABI59006.1| ATPase AAA-2 domain protein [Nitrosomonas eutropha C91]
          Length = 863

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 567 MEDKLHERVIGQDEAVRLVSDAIR------RSRSGLSDPNRPYGSFLFLGPTGVGKTELC 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V++++F E   V R
Sbjct: 621 KALAGFLFDSEEHLIRVDMSEFMEKHSVAR 650


>gi|311029019|ref|ZP_07707109.1| class III stress response-related ATPase, AAA+ superfamily protein
           [Bacillus sp. m3-13]
          Length = 812

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L   +IGQ +A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 504 MESLLHSRVIGQDEAVKAVSKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA          I+++++++ E            GYVG +
Sbjct: 558 RALAESIFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYD 599


>gi|295702321|ref|YP_003595396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium DSM 319]
 gi|294799980|gb|ADF37046.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           megaterium DSM 319]
          Length = 813

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 103/291 (35%), Gaps = 40/291 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AVA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 503 MEEILHSRVIGQEEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          I+++++++ E     R V      +       + E  R +      
Sbjct: 557 RALAESIFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVL 616

Query: 124 ----EQASINAEERILDAL-VGKTATSNTREV-FRKKL--------RDGEISDKEIDIEV 169
               E+A  +    +L  L  G+   S  R V FR  +         D     K +   V
Sbjct: 617 LDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGADTLKRSKHLGFTV 676

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
                +  +      A +      E  +++        +         +LM D+  + + 
Sbjct: 677 EAEGQEYKDMKGKVMAEMKRAFRPEFLNRIDEIIVFHSLEKPHLAEIVKLMADQLTKRLK 736

Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
              +  +  +             DKI   + G         ++R +   +E
Sbjct: 737 EQEIDLELTKEA----------IDKIA--EEGFDPEYGARPLRRAIQKHIE 775


>gi|294787950|ref|ZP_06753194.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Simonsiella
           muelleri ATCC 29453]
 gi|294484243|gb|EFG31926.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Simonsiella
           muelleri ATCC 29453]
          Length = 761

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ +A   +  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 459 LKNMVFGQDNAIDVLVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 513

Query: 76  LAGAPFIKVEVTKFTEIGYVGR 97
             G P  + +++++ E   V R
Sbjct: 514 ALGVPLQRFDMSEYMEAHAVSR 535


>gi|260772639|ref|ZP_05881555.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           metschnikovii CIP 69.14]
 gi|260611778|gb|EEX36981.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           metschnikovii CIP 69.14]
          Length = 730

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S ++I+  LD+     + GQ  A   ++ +++         A L  E  P  + L  GPT
Sbjct: 421 SDKDILKNLDKKMKMLVFGQDKAIEVLSESIK------LTRAGLGAENRPVGSFLFAGPT 474

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAI 111
           GVGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    
Sbjct: 475 GVGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHP 534

Query: 112 N 112
           +
Sbjct: 535 H 535


>gi|161502241|ref|YP_001569353.1| protein disaggregation chaperone [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863588|gb|ABX20211.1| hypothetical protein SARI_00266 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 861

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|157962885|ref|YP_001502919.1| ATP-dependent metalloprotease FtsH [Shewanella pealeana ATCC
           700345]
 gi|157847885|gb|ABV88384.1| ATP-dependent metalloprotease FtsH [Shewanella pealeana ATCC
           700345]
          Length = 650

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   R Q+L   +     P  +LLVGP G GKT +++ +A 
Sbjct: 158 DVAGCDEAKEDVKELVDYLKEPTRFQKLGGRI-----PTGVLLVGPPGTGKTLLAKAIAG 212

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 261


>gi|116070500|ref|ZP_01467769.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116065905|gb|EAU71662.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 642

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 186 DDVAGVTEAKQELEEVVTFLKQPERFTSVGAQI-----PRGLLLVGPPGTGKTLLAKAIA 240

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 241 GEAGVPFFALSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAV 290


>gi|73541668|ref|YP_296188.1| AAA ATPase, central region:Clp, N terminal [Ralstonia eutropha
           JMP134]
 gi|72119081|gb|AAZ61344.1| AAA ATPase, central region:Clp, N terminal [Ralstonia eutropha
           JMP134]
          Length = 862

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHNRVVGQDEAVRLVSDAIR------RSRAGLADENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAEFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|115466174|ref|NP_001056686.1| Os06g0130000 [Oryza sativa Japonica Group]
 gi|52075628|dbj|BAD44799.1| putative spastin protein orthologue [Oryza sativa Japonica Group]
 gi|113594726|dbj|BAF18600.1| Os06g0130000 [Oryza sativa Japonica Group]
 gi|124361604|gb|ABN09244.1| putative spastin-like protein [Oryza sativa Japonica Group]
 gi|215687196|dbj|BAG91761.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767388|dbj|BAG99616.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197493|gb|EEC79920.1| hypothetical protein OsI_21482 [Oryza sativa Indica Group]
          Length = 487

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 215 EDVAGLDKAKQALMEMVILPTKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 272

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VA++  
Sbjct: 273 EATFFNVSASSLT-SKWVGE-AEKLVRTLFMVAVDRQ 307


>gi|328866591|gb|EGG14975.1| ATP-dependent metalloprotease [Dictyostelium fasciculatum]
          Length = 691

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 96/266 (36%), Gaps = 20/266 (7%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  +  ++ A L     P+ ILL G  G GKT ++R +A
Sbjct: 280 DDIKGIDEVKAELIEIVDYLKNPEKYDRIGAKL-----PRGILLSGEPGTGKTLLARAIA 334

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA----INIVRESRRDEV-REQASIN 129
             AG PF+    + F E  Y+G   +++ R+L D+A      I+     D   R + S  
Sbjct: 335 GEAGVPFLYTSGSSFDEK-YIGVGAKRV-RELFDLARSQQPCIIFIDEIDAAGRNRISSR 392

Query: 130 AEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
             E +L  L      +   ++    +     S + +D  +           +P     G 
Sbjct: 393 FNETLLQLLTEMDGFAQENKIM---VIGATNSPESLDAALTRPGRFDRQIAVPIPDFKGR 449

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249
             + E +   +     K     + +  P     +   LI+   +    +   +   +  +
Sbjct: 450 KEIVEFYLSKVSHDEDKIKPEKIARSIPGFTGADISNLINTAAIKA-VLNGQDKVTLKMI 508

Query: 250 DE-FDKIVARDSGNGIGVSREGVQRD 274
           DE  D I+         +S E  +  
Sbjct: 509 DEARDDILMGRERKSSIISEETKRNT 534


>gi|317010567|gb|ADU84314.1| cell division protein FtsH3 [Helicobacter pylori SouthAfrica7]
          Length = 550

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPRKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEAKVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALDYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q  E      L+  DKI 
Sbjct: 379 KHQRTEITHSDILEVKDKIA 398


>gi|312277501|gb|ADQ62158.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus ND03]
          Length = 809

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T +     + SEL + +IGQ +A  A++ A+     R+        +    + + +G
Sbjct: 494 MTQTDSKRYLNLESELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLG 548

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           PTGVGKT +++ LA +     +  ++ +++++ E            GYVG +
Sbjct: 549 PTGVGKTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 600


>gi|296875507|ref|ZP_06899579.1| membrane ATPase FtsH, degrades sigma32 [Streptococcus parasanguinis
           ATCC 15912]
 gi|312866810|ref|ZP_07727023.1| cell division protease FtsH [Streptococcus parasanguinis F0405]
 gi|322390537|ref|ZP_08064055.1| cell division protein FtsH [Streptococcus parasanguinis ATCC 903]
 gi|296433431|gb|EFH19206.1| membrane ATPase FtsH, degrades sigma32 [Streptococcus parasanguinis
           ATCC 15912]
 gi|311097593|gb|EFQ55824.1| cell division protease FtsH [Streptococcus parasanguinis F0405]
 gi|321142811|gb|EFX38271.1| cell division protein FtsH [Streptococcus parasanguinis ATCC 903]
          Length = 657

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            PF  +  + F E+ +VG     V  +  D    A  I+     D V
Sbjct: 247 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAV 292


>gi|226939364|ref|YP_002794437.1| ClpB [Laribacter hongkongensis HLHK9]
 gi|226714290|gb|ACO73428.1| ClpB [Laribacter hongkongensis HLHK9]
          Length = 857

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R VA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 564 MEDVLHQRVVGQDEAVRVVADAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 618 KTLAGFMFDSEDHLIRIDMSEYMEKHSVAR 647


>gi|195133122|ref|XP_002010988.1| GI16253 [Drosophila mojavensis]
 gi|193906963|gb|EDW05830.1| GI16253 [Drosophila mojavensis]
          Length = 839

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 363 LFRDVAGLSEAKQEVKEFVDYLKTPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 417

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 418 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 469


>gi|188582962|ref|YP_001926407.1| ATP-dependent chaperone ClpB [Methylobacterium populi BJ001]
 gi|179346460|gb|ACB81872.1| ATP-dependent chaperone ClpB [Methylobacterium populi BJ001]
          Length = 874

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MEEALAKRVVGQREAVEAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KALAGFLFDDDTALVRIDMSEYMEKHAVAR 649


>gi|187928299|ref|YP_001898786.1| ATP-dependent chaperone ClpB [Ralstonia pickettii 12J]
 gi|187725189|gb|ACD26354.1| ATP-dependent chaperone ClpB [Ralstonia pickettii 12J]
          Length = 862

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|160871902|ref|ZP_02062034.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rickettsiella
           grylli]
 gi|159120701|gb|EDP46039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rickettsiella
           grylli]
          Length = 770

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R + ++L   + GQ  A + +  A++                   + L  GPTGVGKT +
Sbjct: 453 RHLETKLKARVFGQDKAIKNLCAAMK-----LTRSGLRETNKTIGSFLFAGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +R+LA L G   ++ +++++ E            GY+G +   ++ + V    +
Sbjct: 508 TRQLAELMGIELLRFDMSEYMERHSVSRLIGAPPGYIGYDQGGLLTEAVTKHPH 561


>gi|73663554|ref|YP_302335.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72496069|dbj|BAE19390.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 696

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +    +   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 167 DVAGADEEKQEL-IEIVDFLKDNKQFKQMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 224

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 225 TPFFSISGSDFVEM-FVGVGASRV-RDLFENAKKN 257


>gi|37523146|ref|NP_926523.1| endopeptidase Clp ATP-binding chain B [Gloeobacter violaceus PCC
           7421]
 gi|54035799|sp|Q7NFE9|CLPB_GLOVI RecName: Full=Chaperone protein ClpB
 gi|35214149|dbj|BAC91518.1| clpB [Gloeobacter violaceus PCC 7421]
          Length = 872

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ++A R V+ A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 569 LEDELHKRVVGQEEAVRIVSEAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 623 KALASFLFDDENAMVRIDMSEYMEKHSVSR 652


>gi|8051696|dbj|BAA96090.1| FtsH [Thermus thermophilus]
          Length = 624

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F
Sbjct: 171 IVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 225

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 226 VEM-FVGVGAARV-RDLFETAKRH 247


>gi|306430635|emb|CBJ17064.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430637|emb|CBJ17065.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430639|emb|CBJ17066.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430641|emb|CBJ17067.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430651|emb|CBJ17072.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430653|emb|CBJ17073.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430655|emb|CBJ17074.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430661|emb|CBJ17077.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430663|emb|CBJ17078.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430675|emb|CBJ17084.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430677|emb|CBJ17085.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430681|emb|CBJ17087.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430683|emb|CBJ17088.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430685|emb|CBJ17089.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430687|emb|CBJ17090.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430691|emb|CBJ17092.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430693|emb|CBJ17093.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430695|emb|CBJ17094.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430733|emb|CBJ17113.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430741|emb|CBJ17117.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430743|emb|CBJ17118.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430753|emb|CBJ17123.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430757|emb|CBJ17125.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430759|emb|CBJ17126.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430761|emb|CBJ17127.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430765|emb|CBJ17129.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430773|emb|CBJ17133.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|317055620|ref|YP_004104087.1| ATPase AAA-2 domain-containing protein [Ruminococcus albus 7]
 gi|315447889|gb|ADU21453.1| ATPase AAA-2 domain protein [Ruminococcus albus 7]
          Length = 783

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 20/103 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  E+ + +IGQ +A   VA A+    +R ++  D R    P + + VGPTGVGKT +
Sbjct: 475 RNLKDEMSKRVIGQDEAVDKVAKAI----KRTRVQLDKR--RRPASFIFVGPTGVGKTEL 528

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            + L         P I+++++++ E            GYVG +
Sbjct: 529 VKVLGESLFDATEPLIRIDMSEYMEKYSVSKLIGSPPGYVGYD 571



 Score = 41.1 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L PE  GR    V   +L K ++  I     + ++ + K+ +  + I L++T+ ++  +A
Sbjct: 665 LKPEFLGRVDEIVMFNALTKENYEKIA----ALMLDEMKQPLSEKAIKLEYTDAALKLIA 720

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417
           + +        DI  R ++  +E  + ++     +     V +DA+
Sbjct: 721 EKSHGRKLGARDI-RRVIRAEVEDKIAEVIVENGEGCIGLVKVDAD 765


>gi|270261166|ref|ZP_06189439.1| hypothetical protein SOD_a03910 [Serratia odorifera 4Rx13]
 gi|270044650|gb|EFA17741.1| hypothetical protein SOD_a03910 [Serratia odorifera 4Rx13]
          Length = 759

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT +
Sbjct: 449 RNLGDRLKMLVFGQDQAIEALTEAIK-----MSRAGLGHDRKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 504 TVQLAKAMDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVLKHPHS 558


>gi|288941086|ref|YP_003443326.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180]
 gi|288896458|gb|ADC62294.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180]
          Length = 865

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + SE+++ ++GQ +A RAV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MESEIEQRVVGQNEAVRAVSDAIR------RSRAGLSDPGRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAAFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|315032999|gb|EFT44931.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX0017]
          Length = 831

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 564

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 565 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 624

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 625 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 680

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 681 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 740

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 741 VKRMAEQGV 749


>gi|312897982|ref|ZP_07757391.1| ATP-dependent chaperone protein ClpB [Megasphaera micronuciformis
           F0359]
 gi|310620907|gb|EFQ04458.1| ATP-dependent chaperone protein ClpB [Megasphaera micronuciformis
           F0359]
          Length = 873

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 577 LDDTLHQRVVGQDEAVRVVSDAI------MRARAGIKDPNRPIGSFIFLGPTGVGKTELA 630

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 631 KALAESLFDDDRNIVRIDMSEYMEKHTVSR 660


>gi|309782202|ref|ZP_07676931.1| ATP-dependent chaperone protein ClpB [Ralstonia sp. 5_7_47FAA]
 gi|308918973|gb|EFP64641.1| ATP-dependent chaperone protein ClpB [Ralstonia sp. 5_7_47FAA]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|283832493|ref|ZP_06352234.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citrobacter
           youngae ATCC 29220]
 gi|291072153|gb|EFE10262.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citrobacter
           youngae ATCC 29220]
          Length = 758

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + + + L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGNRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 558


>gi|197302375|ref|ZP_03167432.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC
           29176]
 gi|197298554|gb|EDY33097.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC
           29176]
          Length = 612

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG     V  + +D  
Sbjct: 196 RIPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFQDAK 254

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 255 KNAPCIVFIDEIDAV 269


>gi|195978193|ref|YP_002123437.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974898|gb|ACG62424.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 697

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 405 KEISNRLKGHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 459

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 460 AKQLALDMFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 502


>gi|223936703|ref|ZP_03628613.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894554|gb|EEF61005.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 676

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 10  REIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           +E      + + G ++AK  V+     L++  + Q+L   +     PK +L+VG  G GK
Sbjct: 180 KEKNKTTFKDVAGIEEAKEEVSELVEFLKDPKKFQKLGGRI-----PKGVLMVGSPGTGK 234

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T +++ +A  A A F  +  + F E+ +VG    ++ RD+ + A
Sbjct: 235 TLLAKAIAGEADAAFFSISGSDFVEM-FVGVGASRV-RDMFEQA 276


>gi|170769184|ref|ZP_02903637.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           albertii TW07627]
 gi|170121836|gb|EDS90767.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           albertii TW07627]
          Length = 758

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLRNLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|322392413|ref|ZP_08065873.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
 gi|321144405|gb|EFX39806.1| cell division protein FtsH [Streptococcus peroris ATCC 700780]
          Length = 652

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q  +       
Sbjct: 246 VPFFSISGSDFVEM-FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGV------- 297

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
               G    ++ RE    +L       +  +  +   +++ S+   P     G  +   L
Sbjct: 298 ----GLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVL 353

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI----------DMDTVHRDSIQMVENYG 245
             +    GR+  +++  +     L  D   +L+          D++ V  ++  +     
Sbjct: 354 VGRPDVKGREAILKVHAKN--KPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRN 411

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 412 KSVIDASD 419


>gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
 gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
          Length = 651

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+   +  +L A +     PK +LL GP G GKT +++ +A 
Sbjct: 148 DVAGADEAKQELEEVVEFLKTPDKFNELGARI-----PKGVLLFGPPGTGKTLLAKAVAG 202

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  + F E+ +VG    ++ RDL D A
Sbjct: 203 EAGVQFFTISGSDFVEM-FVGVGASRV-RDLFDQA 235


>gi|311744477|ref|ZP_07718278.1| chaperone protein ClpB [Aeromicrobium marinum DSM 15272]
 gi|311312282|gb|EFQ82198.1| chaperone protein ClpB [Aeromicrobium marinum DSM 15272]
          Length = 872

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ+ A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRLIGQRRAVEAVSDAV-----RRSRAGISDPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 621 TLAAFLFDDERAMIRIDMSEYGEKHSVSRLV 651


>gi|262191803|ref|ZP_06049974.1| ClpB protein [Vibrio cholerae CT 5369-93]
 gi|262032290|gb|EEY50857.1| ClpB protein [Vibrio cholerae CT 5369-93]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|224045854|ref|XP_002190590.1| PREDICTED: fidgetin-like 1 [Taeniopygia guttata]
          Length = 689

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 416 DDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 473

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVREQA 126
           GA F  +  +  T   +VG   E+++R L  VA                 S+R E   ++
Sbjct: 474 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGEGEHES 531

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           S   +   L  L G T +S  R +          +++  +I+ A     +    IP   +
Sbjct: 532 SRRIKTEFLVQLDGATTSSEDRILV------VGATNRPQEIDEAARRRLVKRLYIPLPEA 585

Query: 187 VGILNL-SELFSKVMGSGRKKKIRMSVQK 214
                + + L +K   S  +++I++ VQK
Sbjct: 586 SARKQIVTRLMAKEHCSLNEEEIKLIVQK 614



 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 502 AVARCQQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 561

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLK-----SLNKSDFRLIL 338
               I   A    V R    LPE   R  +   L      SLN+ + +LI+
Sbjct: 562 RPQEIDEAARRRLVKRLYIPLPEASARKQIVTRLMAKEHCSLNEEEIKLIV 612


>gi|215408563|emb|CAR31131.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 166

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|166713036|ref|ZP_02244243.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 861

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFIEKHSVAR 645


>gi|170593893|ref|XP_001901698.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi]
 gi|158590642|gb|EDP29257.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi]
          Length = 741

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK   +     LR   +  +L A L     PK  LL GP G GKT +++ LA
Sbjct: 274 KDVAGLHEAKVEIKEFIDYLRRPEKYMKLGARL-----PKGALLTGPPGCGKTFLAKALA 328

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASINA- 130
             +  PFI +  T+F E+  G     +  + +    +A  I+     D + R+++   A 
Sbjct: 329 AESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKMAPCIIYIDEIDAIGRKRSQSEAG 388

Query: 131 -----EERILDALVGKTA------------TSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                EE+ L+ L+ +              ++N  ++  K L      D+ I I++    
Sbjct: 389 GGNREEEQTLNQLLVEMDGIDSGRGIVLLGSTNRGDILDKALLRPGRFDRHIVIDLPTAL 448

Query: 174 SDISNFDI 181
                F++
Sbjct: 449 ERQEIFEL 456


>gi|163814649|ref|ZP_02206038.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
 gi|158450284|gb|EDP27279.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759]
          Length = 641

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  ++ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 198 IVTFLKNPQKFVKVGARI-----PKGVLLVGPPGTGKTLMAKAIAGEAGVPFFSISGSDF 252

Query: 90  TEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            E+ +VG     V  +  +    A  IV     D V  Q
Sbjct: 253 VEM-FVGVGASRVRDLFAEAKKNAPCIVFIDEIDAVARQ 290


>gi|254302227|ref|ZP_04969585.1| M41 family endopeptidase FtsH [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322419|gb|EDK87669.1| M41 family endopeptidase FtsH [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 714

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 274 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGQPGTGKTLLAKAVAG 328

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 329 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 380


>gi|153801889|ref|ZP_01956475.1| clpB protein [Vibrio cholerae MZO-3]
 gi|229519981|ref|ZP_04409411.1| ClpB protein [Vibrio cholerae TM 11079-80]
 gi|124122600|gb|EAY41343.1| clpB protein [Vibrio cholerae MZO-3]
 gi|229343033|gb|EEO08021.1| ClpB protein [Vibrio cholerae TM 11079-80]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|331004965|ref|ZP_08328375.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC1989]
 gi|330421207|gb|EGG95463.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma
           proteobacterium IMCC1989]
          Length = 758

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++ + L   + GQ +   A+  +++             +E    + L  GPTGVGKT +
Sbjct: 457 RKLDANLKMTVFGQDEGIDALTTSIK-----LSRAGLGAEEKPIGSFLFSGPTGVGKTEL 511

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            R+L+   G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 512 CRQLSDAMGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAVTKNPHC 566


>gi|331269758|ref|YP_004396250.1| ATPase AAA-2 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329126308|gb|AEB76253.1| ATPase AAA-2 domain protein [Clostridium botulinum BKT015925]
          Length = 869

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT ++
Sbjct: 572 LEDELKKRVIGQDEATVAVSNAV------IRARAGLKDERRPIGSFIFLGPTGVGKTELA 625

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         I+++++++ E   V R
Sbjct: 626 KTLARNLFDNEDNIIRIDMSEYMEKHAVSR 655


>gi|320102257|ref|YP_004177848.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
 gi|319749539|gb|ADV61299.1| ATP-dependent chaperone ClpB [Isosphaera pallida ATCC 43644]
          Length = 883

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ DA  AVA A+R      +  A+L+D   P  + L +GPTGVGKT ++
Sbjct: 586 LERHLHQRVVGQDDAVEAVANAVR------RSRANLQDPNRPIGSFLFLGPTGVGKTELA 639

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 640 KALAEFLFDDEQAMVRIDMSEYGERHNVAR 669


>gi|308094450|ref|ZP_07662927.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308093934|gb|EFO43629.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus AN-5034]
          Length = 325

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 16  SDKDILKNLDGKMKMLVFGQDNAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 70

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 71  VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 130

Query: 113 I 113
            
Sbjct: 131 S 131


>gi|297626959|ref|YP_003688722.1| Chaperone clpB 2 (ATP-dependent Clp protease B2) (Clp chaperone)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922724|emb|CBL57301.1| Chaperone clpB 2 (ATP-dependent Clp protease B2) (Clp chaperone)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 860

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   + + +IGQ+ A +AVA A+     R+             + L +GPTGVGKT +++
Sbjct: 566 MEEHIGKRLIGQKRAVKAVADAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I++++++++E   V R V
Sbjct: 621 SLADFLFDDETAMIRIDMSEYSEKHSVSRLV 651


>gi|268596456|ref|ZP_06130623.1| ATP-dependent Clp protease [Neisseria gonorrhoeae FA19]
 gi|268550244|gb|EEZ45263.1| ATP-dependent Clp protease [Neisseria gonorrhoeae FA19]
          Length = 769

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 467 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 521

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 522 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 570


>gi|268594460|ref|ZP_06128627.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 35/02]
 gi|268547849|gb|EEZ43267.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 35/02]
          Length = 769

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 467 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 521

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 522 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 570


>gi|240080307|ref|ZP_04724850.1| ClpA [Neisseria gonorrhoeae FA19]
 gi|240112518|ref|ZP_04727008.1| ClpA [Neisseria gonorrhoeae MS11]
 gi|240123100|ref|ZP_04736056.1| ClpA [Neisseria gonorrhoeae PID332]
 gi|268598588|ref|ZP_06132755.1| ATP-dependent Clp protease [Neisseria gonorrhoeae MS11]
 gi|268681728|ref|ZP_06148590.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID332]
 gi|268582719|gb|EEZ47395.1| ATP-dependent Clp protease [Neisseria gonorrhoeae MS11]
 gi|268622012|gb|EEZ54412.1| ATP-dependent Clp protease [Neisseria gonorrhoeae PID332]
 gi|317163876|gb|ADV07417.1| hypothetical protein NGTW08_0445 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 763

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|239998602|ref|ZP_04718526.1| ClpA [Neisseria gonorrhoeae 35/02]
          Length = 763

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|254493322|ref|ZP_05106493.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 1291]
 gi|226512362|gb|EEH61707.1| ATP-dependent Clp protease [Neisseria gonorrhoeae 1291]
          Length = 763

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L+  + GQ+DA  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 461 LNNMVYGQEDAIDALVSAVK-----MSRSGLGLPDKPIGSFLFSGPTGVGKTEVAKQLAY 515

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 516 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 564


>gi|156934622|ref|YP_001438538.1| ATP-dependent Clp protease ATP-binding subunit [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532876|gb|ABU77702.1| hypothetical protein ESA_02456 [Cronobacter sakazakii ATCC BAA-894]
          Length = 757

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 447 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|149921067|ref|ZP_01909526.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
 gi|149818071|gb|EDM77528.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A+     +   LR+  +  ++   +     PK +LL+GP G GKT ++R +A
Sbjct: 163 KDVAGVEEARDEVEEIIDFLRDTRKYMRVGGRI-----PKGVLLMGPPGTGKTLLARAIA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEV 122
             AG  F  +  + F E+ +VG    ++ RDL +     A  I+     D V
Sbjct: 218 GEAGVAFFSISGSDFVEM-FVGVGASRV-RDLFEQGKKNAPCIIFIDEIDAV 267


>gi|146321826|ref|YP_001201537.1| ATPases with chaperone activity, ATP-binding protein [Streptococcus
           suis 98HAH33]
 gi|145692632|gb|ABP93137.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 98HAH33]
          Length = 817

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ++A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 510 LEQELHKRVIGQEEAISAVSRAI-----RRNQSGIRTGHRPSGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 565 ALAEILFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 603


>gi|88812889|ref|ZP_01128133.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitrococcus
           mobilis Nb-231]
 gi|88789811|gb|EAR20934.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitrococcus
           mobilis Nb-231]
          Length = 755

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 26/159 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59
           M+L  N        +L R I GQ  A   ++  ++         A LRD E      L  
Sbjct: 450 MRLLENL-----DQDLKRVIFGQDQAIDTLSTTIK------MSRAGLRDTEKPVGCFLFA 498

Query: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108
           GPTGVGKT ++R+LA + G   ++ +++++ E            GYVG +   +   L +
Sbjct: 499 GPTGVGKTEVTRQLAEVMGVQLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTE 555

Query: 109 VAINIVRESRRDEVREQASINAEERILDALVGKTATSNT 147
             I         +  E+A  +    +L  +     T N 
Sbjct: 556 EVIKHPHSVVLLDEIEKAHADVFNLLLQVMDHGALTDNN 594


>gi|312913650|dbj|BAJ37624.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|295108565|emb|CBL22518.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
           obeum A2-162]
          Length = 832

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A +AVA A+    +R ++   L+D   P  + L +GPTGVGKT +S
Sbjct: 510 LEKELHKRVIGQDEAVKAVAQAV----KRGRVG--LKDPHRPIGSFLFLGPTGVGKTELS 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+V+++++ E            GYVG +       L +        
Sbjct: 564 KALAEAVFGSEQAMIRVDMSEYMEKHSVSKLIGSPPGYVGYD---EGGQLSEKVRRNPYS 620

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    ++ R+V  K+      S+      +      
Sbjct: 621 VLLFDEIEKAHPDVFNILLQVLDDGHITDAHGRKVDFKQTIIIMTSNVGAQAIIEPKKLG 680

Query: 176 -ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
            +S  D           + E   ++       +I   +   +  L + E  ++++
Sbjct: 681 FMSEKDDRQDYERMKSGVMEEVRRLFKPEFLNRIDEIMV--FHPLKKPEIKKIVN 733


>gi|288941980|ref|YP_003444220.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
 gi|288897352|gb|ADC63188.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +L+VGP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RD+ + A 
Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQAK 241

Query: 112 NI 113
             
Sbjct: 242 KH 243


>gi|289803096|ref|ZP_06533725.1| protein disaggregation chaperone [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 292

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
          L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 1  LHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 54

Query: 75 RLA---GAPFIKVEVTKFTEIGYVGRNV 99
                    +++++++F E   V R V
Sbjct: 55 NFMFDSDDAMVRIDMSEFMEKHSVSRLV 82


>gi|225849953|ref|YP_002730187.1| cell division protease FtsH [Persephonella marina EX-H1]
 gi|225645469|gb|ACO03655.1| cell division protease FtsH [Persephonella marina EX-H1]
          Length = 627

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K   + +   L+   R Q+L         PK ILL G  GVGKT +++ +A
Sbjct: 153 DDVAGMDEVKEEVKELIDYLKEPQRFQKLGG-----RAPKGILLYGDPGVGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             A  PFI +  + F E+ +VG    ++ RDL + A   
Sbjct: 208 GEANVPFISISGSDFVEM-FVGVGAARV-RDLFETAKKH 244


>gi|182440247|ref|YP_001827966.1| putative chaperone [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178468763|dbj|BAG23283.1| putative chaperone [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 846

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  E+   I+GQ +A  AV+ A+     R+             + L +GPTGVGKT ++
Sbjct: 529 KLEEEMHARIVGQDEAVTAVSEAV-----RRNRAGMGDPNRPVGSFLFLGPTGVGKTELA 583

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 584 KTLAELLFGADDRMVRFDMSEFQEKHTVARLV 615


>gi|156551619|ref|XP_001600109.1| PREDICTED: similar to AT01057p [Nasonia vitripennis]
          Length = 751

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 89/273 (32%), Gaps = 41/273 (15%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT ++R +A   
Sbjct: 477 DDIAGQETAKQALQEMVILPSLRPELFTGLRTP--ARGLLLFGPPGNGKTLLARAVATQC 534

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVREQA 126
            A F  +     T   YVG   E+++R L  +A  +              S R +   +A
Sbjct: 535 NATFFSISAASLT-SKYVGDG-EKLVRALFAIARELQPSVIFIDEVDSLLSERKDNEHEA 592

Query: 127 SINA---------------EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171
           S                  EERIL       A +N  +   +           + +    
Sbjct: 593 SRRLKTEFLVEFDGLPCSPEERIL-----VMAATNRPQELDEAALRRFSKRVYVTLPDYQ 647

Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231
           T   +    +               S +        +    +      +R+     ++++
Sbjct: 648 TRIILLKRLLAKHNDPLTEEELNQMSMLTEGYSGSDLTGLAKDAALGPIRE-----LNVE 702

Query: 232 TVHRDSIQMVENYGIV-FLDEFDKIVARDSGNG 263
            V   S+  V N     F+D   KI    S   
Sbjct: 703 QVKDMSLSAVRNITQQDFIDSLKKIRKSVSPGS 735


>gi|241662872|ref|YP_002981232.1| ATP-dependent chaperone ClpB [Ralstonia pickettii 12D]
 gi|240864899|gb|ACS62560.1| ATP-dependent chaperone ClpB [Ralstonia pickettii 12D]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|15640730|ref|NP_230360.1| clpB protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587768|ref|ZP_01677528.1| clpB protein [Vibrio cholerae 2740-80]
 gi|227080891|ref|YP_002809442.1| clpB protein [Vibrio cholerae M66-2]
 gi|229505671|ref|ZP_04395181.1| ClpB protein [Vibrio cholerae BX 330286]
 gi|229508756|ref|ZP_04398249.1| ClpB protein [Vibrio cholerae B33]
 gi|229519494|ref|ZP_04408937.1| ClpB protein [Vibrio cholerae RC9]
 gi|229608689|ref|YP_002879337.1| ClpB protein [Vibrio cholerae MJ-1236]
 gi|254851041|ref|ZP_05240391.1| chaperone protein clpB [Vibrio cholerae MO10]
 gi|255743832|ref|ZP_05417788.1| ClpB protein [Vibrio cholera CIRS 101]
 gi|262156051|ref|ZP_06029170.1| ClpB protein [Vibrio cholerae INDRE 91/1]
 gi|54035907|sp|Q9KU18|CLPB_VIBCH RecName: Full=Chaperone protein ClpB
 gi|9655153|gb|AAF93876.1| clpB protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547995|gb|EAX58075.1| clpB protein [Vibrio cholerae 2740-80]
 gi|227008779|gb|ACP04991.1| clpB protein [Vibrio cholerae M66-2]
 gi|229344183|gb|EEO09158.1| ClpB protein [Vibrio cholerae RC9]
 gi|229354280|gb|EEO19210.1| ClpB protein [Vibrio cholerae B33]
 gi|229357894|gb|EEO22811.1| ClpB protein [Vibrio cholerae BX 330286]
 gi|229371344|gb|ACQ61767.1| ClpB protein [Vibrio cholerae MJ-1236]
 gi|254846746|gb|EET25160.1| chaperone protein clpB [Vibrio cholerae MO10]
 gi|255738463|gb|EET93852.1| ClpB protein [Vibrio cholera CIRS 101]
 gi|262030087|gb|EEY48732.1| ClpB protein [Vibrio cholerae INDRE 91/1]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|328542101|ref|YP_004302210.1| ATPase, AAA family [polymorphum gilvum SL003B-26A1]
 gi|326411850|gb|ADZ68913.1| ATPase, AAA family [Polymorphum gilvum SL003B-26A1]
          Length = 865

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 562 MEDDLARRVVGQAEAIHAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAAFLFDDDTAMVRIDMSEFMEKHSVAR 645


>gi|320095492|ref|ZP_08027162.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977577|gb|EFW09250.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 687

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG    ++ RDL D A
Sbjct: 208 RIPRGVLLYGPPGTGKTLLAKAVAGEAHAPFFSISGSEFMEL-YVGVGASRV-RDLFDRA 265

Query: 111 INI 113
              
Sbjct: 266 KKN 268


>gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 667

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  + K+ + I + +  +  +   ++   + PK +LLVGP G GKT ++R +A  AG
Sbjct: 136 DVAGADEEKQEL-IEIVDFLKDNKKFKEMGSRI-PKGVLLVGPPGTGKTLLARAVAGEAG 193

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           APF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 194 APFFSISGSDFVEM-FVGVGASRV-RDLFDNAKKN 226


>gi|326780910|ref|ZP_08240175.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326661243|gb|EGE46089.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 846

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  E+   I+GQ +A  AV+ A+     R+             + L +GPTGVGKT ++
Sbjct: 529 KLEEEMHARIVGQDEAVTAVSEAV-----RRNRAGMGDPNRPVGSFLFLGPTGVGKTELA 583

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 584 KTLAELLFGADDRMVRFDMSEFQEKHTVARLV 615


>gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
 gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489]
          Length = 642

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 25  DAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81
           +AK  V   +   +N  R   L A +     PK +LLVGP G GKT +++ +A  A  PF
Sbjct: 187 EAKDEVVEIVDFLKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPF 241

Query: 82  IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             V  + F E+ +VG    ++ RDL + A   
Sbjct: 242 FSVSGSSFIEM-FVGVGASRV-RDLFENAKKN 271


>gi|224369761|ref|YP_002603925.1| ClpA [Desulfobacterium autotrophicum HRM2]
 gi|223692478|gb|ACN15761.1| ClpA [Desulfobacterium autotrophicum HRM2]
          Length = 749

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            ++ ++L++ I GQ  A   +  ++    +R +            + L  GPTGVGKT +
Sbjct: 451 EQLSTKLEQTIFGQDHAIETLTTSI----KRSRAGLSSPG-RPIGSFLFTGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           +++LA   G  F++ +++++ E            GYVG +   I+ D +    + 
Sbjct: 506 AKQLAANLGIEFLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGILTDNIRKHPHS 560


>gi|183598327|ref|ZP_02959820.1| hypothetical protein PROSTU_01718 [Providencia stuartii ATCC 25827]
 gi|188020502|gb|EDU58542.1| hypothetical protein PROSTU_01718 [Providencia stuartii ATCC 25827]
          Length = 761

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S L   + GQ DA  A+  A++            +D     + L  GPTGVGKT +
Sbjct: 452 KTLDSRLKMLVFGQDDAITALTEAIK-----MSRAGLGQDHKPVGSFLFAGPTGVGKTEV 506

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 507 TVQLAKALDIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 561


>gi|119510404|ref|ZP_01629538.1| ATPase [Nodularia spumigena CCY9414]
 gi|119464933|gb|EAW45836.1| ATPase [Nodularia spumigena CCY9414]
          Length = 884

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 570 QLETHLHQRVIGQHEAVAAVSAAIR------RARAGMKDPGRPIGSFLFMGPTGVGKTEL 623

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         I+++++++ E   V R V
Sbjct: 624 ARALAQFLFDSDDALIRLDMSEYMEKHSVSRLV 656


>gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str.
           MIT 9313]
          Length = 638

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVTEAKQDLEEVVTFLKKPERFTSVGAQI-----PRGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRV-RDLFKRA 269


>gi|16761514|ref|NP_457131.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765976|ref|NP_461591.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142985|ref|NP_806327.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|167992437|ref|ZP_02573535.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168244680|ref|ZP_02669612.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194448814|ref|YP_002046666.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197265769|ref|ZP_03165843.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|213051813|ref|ZP_03344691.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213649749|ref|ZP_03379802.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850142|ref|ZP_03381040.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289824160|ref|ZP_06543755.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54035784|sp|Q7AMH5|CLPB_SALTI RecName: Full=Chaperone protein ClpB
 gi|54035786|sp|Q7CQ01|CLPB_SALTY RecName: Full=Chaperone protein ClpB
 gi|25289914|pir||AI0831 ClpB protein (heat shock protein f84.1) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421207|gb|AAL21550.1| ATP-dependent protease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503815|emb|CAD05840.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138617|gb|AAO70187.1| ClpB protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|194407118|gb|ACF67337.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197244024|gb|EDY26644.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329269|gb|EDZ16033.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336469|gb|EDZ23233.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|267994801|gb|ACY89686.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159207|emb|CBW18722.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|321223454|gb|EFX48519.1| ClpB protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130994|gb|ADX18424.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989585|gb|AEF08568.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|315155649|gb|EFT99665.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0043]
          Length = 886

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|261247854|emb|CBG25683.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|260597284|ref|YP_003209855.1| ATP-dependent Clp protease ATP-binding subunit [Cronobacter
           turicensis z3032]
 gi|260216461|emb|CBA29594.1| ATP-dependent Clp protease ATP-binding subunit clpA [Cronobacter
           turicensis z3032]
          Length = 757

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT
Sbjct: 447 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHDRKPVGSFLFAGPTGVGKT 501

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|257421994|ref|ZP_05598984.1| chaperone clpB [Enterococcus faecalis X98]
 gi|257163818|gb|EEU93778.1| chaperone clpB [Enterococcus faecalis X98]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|229545227|ref|ZP_04433952.1| S14 family endopeptidase Clp [Enterococcus faecalis TX1322]
 gi|256763055|ref|ZP_05503635.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|256853703|ref|ZP_05559068.1| chaperone protein clpB [Enterococcus faecalis T8]
 gi|256956642|ref|ZP_05560813.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis DS5]
 gi|256963536|ref|ZP_05567707.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|257079568|ref|ZP_05573929.1| AAA ATPase [Enterococcus faecalis JH1]
 gi|257082053|ref|ZP_05576414.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
 gi|257087392|ref|ZP_05581753.1| AAA ATPase [Enterococcus faecalis D6]
 gi|257090526|ref|ZP_05584887.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257416567|ref|ZP_05593561.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis AR01/DG]
 gi|257419819|ref|ZP_05596813.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T11]
 gi|294781440|ref|ZP_06746781.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis PC1.1]
 gi|300860809|ref|ZP_07106896.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270881|ref|ZP_07552168.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX4248]
 gi|307271475|ref|ZP_07552747.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0855]
 gi|307287757|ref|ZP_07567797.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0109]
 gi|307291032|ref|ZP_07570919.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0411]
 gi|312903722|ref|ZP_07762896.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0635]
 gi|229309577|gb|EEN75564.1| S14 family endopeptidase Clp [Enterococcus faecalis TX1322]
 gi|256684306|gb|EEU24001.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T3]
 gi|256710646|gb|EEU25689.1| chaperone protein clpB [Enterococcus faecalis T8]
 gi|256947138|gb|EEU63770.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis DS5]
 gi|256954032|gb|EEU70664.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|256987598|gb|EEU74900.1| AAA ATPase [Enterococcus faecalis JH1]
 gi|256990083|gb|EEU77385.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis E1Sol]
 gi|256995422|gb|EEU82724.1| AAA ATPase [Enterococcus faecalis D6]
 gi|256999338|gb|EEU85858.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
           faecalis CH188]
 gi|257158395|gb|EEU88355.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis ARO1/DG]
 gi|257161647|gb|EEU91607.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T11]
 gi|294451478|gb|EFG19939.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis PC1.1]
 gi|295113401|emb|CBL32038.1| ATP-dependent chaperone ClpB [Enterococcus sp. 7L76]
 gi|300849848|gb|EFK77598.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TUSoD
           Ef11]
 gi|306497935|gb|EFM67465.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0411]
 gi|306501206|gb|EFM70510.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0109]
 gi|306511747|gb|EFM80745.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0855]
 gi|306512794|gb|EFM81439.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX4248]
 gi|310632914|gb|EFQ16197.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0635]
 gi|315025179|gb|EFT37111.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX2137]
 gi|315031001|gb|EFT42933.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX4000]
 gi|315035659|gb|EFT47591.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0027]
 gi|315164771|gb|EFU08788.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX1302]
 gi|315166449|gb|EFU10466.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX1341]
 gi|315170340|gb|EFU14357.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX1342]
 gi|315173627|gb|EFU17644.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX1346]
 gi|315576903|gb|EFU89094.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0630]
 gi|323481316|gb|ADX80755.1| ATP-dependent chaperone ClpB [Enterococcus faecalis 62]
 gi|327535646|gb|AEA94480.1| chaperone protein ClpB [Enterococcus faecalis OG1RF]
 gi|329569969|gb|EGG51724.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX1467]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|225868474|ref|YP_002744422.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701750|emb|CAW99127.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus equi subsp. zooepidemicus]
          Length = 697

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 405 KEISNRLKGHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 459

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 460 AKQLALDMFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 502


>gi|118594452|ref|ZP_01551799.1| ATPase with chaperone activity [Methylophilales bacterium HTCC2181]
 gi|118440230|gb|EAV46857.1| ATPase with chaperone activity [Methylophilales bacterium HTCC2181]
          Length = 751

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   I GQ  A  +++ A++             D     + L  GPTGVGKT ++R
Sbjct: 450 LERDLKAVIFGQNKAIESLSSAIK-----MARSGLGSDNKPIGSFLFSGPTGVGKTEVAR 504

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++++++++ E            GYVG +   I+ + V+   + 
Sbjct: 505 QLAYILGIELVRIDMSEYMERHSVSKLIGAPPGYVGFDQGGILTESVNKNPHS 557


>gi|148652685|ref|YP_001279778.1| ATPase [Psychrobacter sp. PRwf-1]
 gi|148571769|gb|ABQ93828.1| ATPase AAA-2 domain protein [Psychrobacter sp. PRwf-1]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A ++VA A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 566 MEERLHERVVGQDEAVQSVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KSLANFLFDSEDAMVRIDMSEFMEKHSVSRLV 651


>gi|68171311|ref|ZP_00544710.1| AAA ATPase, central region:Clp, N terminal [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658213|ref|YP_507187.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999262|gb|EAM85913.1| AAA ATPase, central region:Clp, N terminal [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599670|gb|ABD45139.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ+ A +AV+ A+     R+             + L +GPTGVGKT + +
Sbjct: 561 MEEEIGKTVIGQESAIKAVSDAV-----RRSRAGVQDANKPLGSFLFLGPTGVGKTELVK 615

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA       +  ++ ++++F E            GYVG +   +   L +       + 
Sbjct: 616 TLAEFLFCDKSALLRFDMSEFMEKHAVSRLIGAPPGYVGYDQGGM---LTESVRRRPYQV 672

Query: 118 RRDEVREQASINAEERILDALVGKTATSNT 147
              +  E+A  +    +L  L     T N 
Sbjct: 673 ILFDEIEKAHGDIFNILLQVLDEGRLTDNH 702


>gi|222824258|ref|YP_002575832.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222539480|gb|ACM64581.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 640

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVGP G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 208 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASRV-RDLFENAK 265

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    E    + 
Sbjct: 266 KEAPAIVFIDEIDAIGKSRA------ASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIV 319

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
             +++            G  +   L  K    GR   +++ ++ 
Sbjct: 320 LAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKD 363


>gi|332685809|ref|YP_004455583.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / negative
           regulator of genetic competence clcC/mecB [Melissococcus
           plutonius ATCC 35311]
 gi|332369818|dbj|BAK20774.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / negative
           regulator of genetic competence clcC/mecB [Melissococcus
           plutonius ATCC 35311]
          Length = 829

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 26/144 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S L + ++GQ +A +AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 513 ELESILHKRVVGQNEAVKAVSKAIR------RARSGLKDPKRPIGSFMFLGPTGVGKTEL 566

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     ++V
Sbjct: 567 AKALAEAMFGSEDALIRVDMSEFMERYNTSRLVGSPPGYVGYEEGGQLTEKIRQKPYSVV 626

Query: 115 RESRRDEVREQASINAEERILDAL 138
                +    +A  +    +L  L
Sbjct: 627 LLDEIE----KAHTDVFNMLLQVL 646


>gi|315032832|gb|EFT44764.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0017]
          Length = 898

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 594 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 647

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 648 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 680


>gi|307277225|ref|ZP_07558329.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX2134]
 gi|306506155|gb|EFM75321.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX2134]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|256617182|ref|ZP_05474028.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis ATCC 4200]
 gi|256596709|gb|EEU15885.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Enterococcus
           faecalis ATCC 4200]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|167922700|ref|ZP_02509791.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           BCC215]
          Length = 666

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|153854743|ref|ZP_01995977.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
 gi|149752650|gb|EDM62581.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814]
          Length = 510

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L++  +  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 78  IVDFLKSPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDF 132

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 133 VEM-FVGVGASRV-RDLFEEAKKN 154


>gi|29376856|ref|NP_816010.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Enterococcus
           faecalis V583]
 gi|227517049|ref|ZP_03947098.1| S14 family endopeptidase Clp [Enterococcus faecalis TX0104]
 gi|227553894|ref|ZP_03983941.1| S14 family endopeptidase Clp [Enterococcus faecalis HH22]
 gi|229549466|ref|ZP_04438191.1| S14 family endopeptidase Clp [Enterococcus faecalis ATCC 29200]
 gi|255972169|ref|ZP_05422755.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T1]
 gi|255975233|ref|ZP_05425819.1| AAA ATPase [Enterococcus faecalis T2]
 gi|257084680|ref|ZP_05579041.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
 gi|307285326|ref|ZP_07565470.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0860]
 gi|312899787|ref|ZP_07759106.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0470]
 gi|312953399|ref|ZP_07772239.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0102]
 gi|54035825|sp|Q831Y7|CLPB_ENTFA RecName: Full=Chaperone protein ClpB
 gi|29344321|gb|AAO82080.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Enterococcus
           faecalis V583]
 gi|227075496|gb|EEI13459.1| S14 family endopeptidase Clp [Enterococcus faecalis TX0104]
 gi|227176978|gb|EEI57950.1| S14 family endopeptidase Clp [Enterococcus faecalis HH22]
 gi|229305381|gb|EEN71377.1| S14 family endopeptidase Clp [Enterococcus faecalis ATCC 29200]
 gi|255963187|gb|EET95663.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis T1]
 gi|255968105|gb|EET98727.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256992710|gb|EEU80012.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
           faecalis Fly1]
 gi|306502903|gb|EFM72165.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0860]
 gi|310628608|gb|EFQ11891.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0102]
 gi|311293037|gb|EFQ71593.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0470]
 gi|315146032|gb|EFT90048.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX2141]
 gi|315150193|gb|EFT94209.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0012]
 gi|315152067|gb|EFT96083.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0031]
 gi|315159129|gb|EFU03146.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX0312]
 gi|315574405|gb|EFU86596.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis
           TX0309B]
 gi|315580121|gb|EFU92312.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis
           TX0309A]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|127513876|ref|YP_001095073.1| ATPase [Shewanella loihica PV-4]
 gi|126639171|gb|ABO24814.1| ATPase AAA-2 domain protein [Shewanella loihica PV-4]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEALHTRVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+      A  +++++++F E   V R V
Sbjct: 616 KSLAKFLFDTEAAMVRIDMSEFMEKHSVSRLV 647


>gi|328954112|ref|YP_004371446.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328454436|gb|AEB10265.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 625

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 28/205 (13%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A   +      L+N  + Q L   +     PK +LLVGP G GKT + R +A
Sbjct: 176 KDVAGVEEAIEELQEVIEFLQNPEKFQALGGKI-----PKGVLLVGPPGTGKTLLGRAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF+ +  + F E+ +VG    ++ RDL   A            +E+A        
Sbjct: 231 GEAGVPFLSLTGSDFVEM-FVGVGAARV-RDLFAQA------------QEKAPCIIFIDE 276

Query: 135 LDA------LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           LDA      L   T     RE    +L             +  ++++      P     G
Sbjct: 277 LDAIGKARSLSPITGGHEERENTLNQLLSEMDGFDTRKGVIIMSATNRPEILDPALIRPG 336

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQ 213
             +   L  +    GR+  +R+ V+
Sbjct: 337 RFDRQILVDRPSLKGREDILRVHVR 361


>gi|304413814|ref|ZP_07395231.1| ATP-dependent protease specificity component and chaperone
           [Candidatus Regiella insecticola LSR1]
 gi|304283534|gb|EFL91929.1| ATP-dependent protease specificity component and chaperone
           [Candidatus Regiella insecticola LSR1]
          Length = 762

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L+  + GQ  A  A+  A++         A L  E  P  + L  GPTGVGKT ++
Sbjct: 454 LRDRLNMLVFGQDKAIEALTEAIK------MSRAGLGHERKPVGSFLFAGPTGVGKTEVT 507

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 508 VQLAKALHIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHS 561


>gi|302339653|ref|YP_003804859.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293]
 gi|301636838|gb|ADK82265.1| ATPase AAA-2 domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 748

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ +A  AV  ++    +R +       E    + L VGPTGVGKT +
Sbjct: 452 RTLEQRLKSVVFGQDEAVSAVVESI----KRSRAGFG-NGERPVASFLFVGPTGVGKTEL 506

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           +R+LA   G   I+ +++++ E   V R V  
Sbjct: 507 ARQLAEHLGIGLIRFDMSEYQERHSVSRLVGS 538


>gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
 gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
          Length = 829

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            GQ   K  +   +    +  +   +     +PK +LL GP G GKT ++R +A  AG P
Sbjct: 294 AGQDYIKAELQEVV----KLLKESKEDPTVYVPKGVLLHGPPGTGKTLLARAIAGEAGLP 349

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           F  V   +F E+ Y G    ++ +DL   A N 
Sbjct: 350 FFSVGGAEFVEM-YAGVAAARV-QDLFSRARNF 380


>gi|237742842|ref|ZP_04573323.1| cell division protein ftsH [Fusobacterium sp. 4_1_13]
 gi|229430490|gb|EEO40702.1| cell division protein ftsH [Fusobacterium sp. 4_1_13]
          Length = 707

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 267 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGQPGTGKTLLAKAVAG 321

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 322 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 373


>gi|212712900|ref|ZP_03321028.1| hypothetical protein PROVALCAL_03997 [Providencia alcalifaciens DSM
           30120]
 gi|212684445|gb|EEB43973.1| hypothetical protein PROVALCAL_03997 [Providencia alcalifaciens DSM
           30120]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 562 MEQQLHQRVIGQDEAVVAVSNAIR------RSRAGLSDPNRPIGSFMFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|207858010|ref|YP_002244661.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709813|emb|CAR34165.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|205353699|ref|YP_002227500.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273480|emb|CAR38457.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628805|gb|EGE35148.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
 gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
          Length = 584

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V      + G  +A    + V   L+   + + L A      +PK +LL+GP G GKT +
Sbjct: 129 VETRFDDVAGVPEAAEELKEVITFLKEPKKFENLGAK-----VPKGVLLIGPPGTGKTLL 183

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  +G PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 184 AKAIAGESGVPFLSISASEFVEL-FVGVGASRV-RDLFSKA 222


>gi|117619764|ref|YP_858496.1| ATP-dependent chaperone protein ClpB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561171|gb|ABK38119.1| ATP-dependent chaperone protein ClpB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ++A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDQLHSRVIGQEEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAEFLFDTQDAMVRIDMSEFMEKHSVARLV 647


>gi|56414627|ref|YP_151702.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181233|ref|YP_217650.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168262170|ref|ZP_02684143.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464169|ref|ZP_02698086.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822477|ref|ZP_02834477.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443281|ref|YP_002041924.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472869|ref|ZP_03078853.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736447|ref|YP_002115671.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248685|ref|YP_002147563.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197363554|ref|YP_002143191.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243260|ref|YP_002216671.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388055|ref|ZP_03214667.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929414|ref|ZP_03220488.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224584513|ref|YP_002638311.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909506|ref|ZP_04653343.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56128884|gb|AAV78390.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128866|gb|AAX66569.1| ATP-dependent protease, Hsp 100, part of novel multi-chaperone
           system with DnaK, DnaJ, and GrpE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194401944|gb|ACF62166.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194459233|gb|EDX48072.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711949|gb|ACF91170.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633279|gb|EDX51693.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095031|emb|CAR60577.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212388|gb|ACH49785.1| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197937776|gb|ACH75109.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605153|gb|EDZ03698.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321133|gb|EDZ06333.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205341135|gb|EDZ27899.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349068|gb|EDZ35699.1| chaperone protein clpB [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|224469040|gb|ACN46870.1| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320087093|emb|CBY96861.1| Chaperone protein clpB 2 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322614490|gb|EFY11421.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621445|gb|EFY18298.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624306|gb|EFY21139.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629395|gb|EFY26173.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633635|gb|EFY30377.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638322|gb|EFY35020.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639760|gb|EFY36443.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647378|gb|EFY43874.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650452|gb|EFY46862.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656055|gb|EFY52355.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661449|gb|EFY57674.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662649|gb|EFY58857.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667022|gb|EFY63197.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671391|gb|EFY67514.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677602|gb|EFY73665.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681572|gb|EFY77602.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683972|gb|EFY79982.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715719|gb|EFZ07290.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195541|gb|EFZ80719.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197914|gb|EFZ83037.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203092|gb|EFZ88124.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205333|gb|EFZ90308.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210517|gb|EFZ95401.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218202|gb|EGA02914.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221532|gb|EGA05945.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323230965|gb|EGA15083.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234683|gb|EGA18769.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238722|gb|EGA22772.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241421|gb|EGA25452.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246881|gb|EGA30848.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253280|gb|EGA37110.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257076|gb|EGA40785.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260451|gb|EGA44062.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264492|gb|EGA47998.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269627|gb|EGA53080.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624427|gb|EGE30772.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|55822067|ref|YP_140508.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|55738052|gb|AAV61693.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus CNRZ1066]
          Length = 816

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T +     + SEL + +IGQ +A  A++ A+     R+        +    + + +G
Sbjct: 501 MTQTDSKRYLNLESELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLG 555

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           PTGVGKT +++ LA +     +  ++ +++++ E            GYVG +
Sbjct: 556 PTGVGKTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607


>gi|17546054|ref|NP_519456.1| ATP-dependent protease [Ralstonia solanacearum GMI1000]
 gi|54035873|sp|Q8XZR0|CLPB_RALSO RecName: Full=Chaperone protein ClpB
 gi|17428350|emb|CAD15037.1| probable chaperone clpb protein [Ralstonia solanacearum GMI1000]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT + 
Sbjct: 565 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 619 KALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|315146641|gb|EFT90657.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis TX4244]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|313886325|ref|ZP_07820050.1| putative negative regulator of genetic competence ClpC/MecB
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924194|gb|EFR34978.1| putative negative regulator of genetic competence ClpC/MecB
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 1009

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++   L   +IGQ DA   V  A+  +  R  L +D R      + L +GPTGVGKT +
Sbjct: 671 RQMRQTLKDIVIGQDDAIDKVVKAI--QRNRLGLGSDNR---PIGSFLFLGPTGVGKTYL 725

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           +++LA L        I+++++++ E            GYVG +
Sbjct: 726 AKKLAELLFDDEDALIRIDMSEYMESFNVSRLVGAAPGYVGYD 768


>gi|300790955|ref|YP_003771246.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Amycolatopsis
           mediterranei U32]
 gi|299800469|gb|ADJ50844.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Amycolatopsis
           mediterranei U32]
          Length = 865

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A + VA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 567 MEEELTRRVIGQAEAVQVVADAV-----RRARAGVADPDRPTGSFLFLGPTGVGKTELAK 621

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA           +++++++ E   V R V
Sbjct: 622 ALAEFLFDDERAIQRIDMSEYAEKHSVARLV 652


>gi|299067390|emb|CBJ38589.1| Chaperone [Ralstonia solanacearum CMR15]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT + 
Sbjct: 565 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 619 KALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|253681744|ref|ZP_04862541.1| ATP-dependent chaperone protein ClpB [Clostridium botulinum D str.
           1873]
 gi|253561456|gb|EES90908.1| ATP-dependent chaperone protein ClpB [Clostridium botulinum D str.
           1873]
          Length = 876

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT ++
Sbjct: 579 LEDELKKRVIGQEEATVAVSNAV------IRARAGLKDERRPIGSFIFLGPTGVGKTELA 632

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         I+++++++ E   V R
Sbjct: 633 KTLARNLFDSEDNIIRIDMSEYMEKHAVSR 662


>gi|297560333|ref|YP_003679307.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844781|gb|ADH66801.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 830

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 43/263 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ +A  AV+ A+     R+        +    + L +GPTGVGKT ++R
Sbjct: 524 LEEVLHERVIGQDEAVTAVSEAI-----RRSRAGLGDPDRPVGSFLFLGPTGVGKTELAR 578

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRES 117
            LA          +++++++F E            G+VG      + + V      V   
Sbjct: 579 ALAEALFGSEDSMVRIDMSEFQERHTASRLTGAPPGFVGYEEAGQLTEAVRRHPYSVL-- 636

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             DEV E+A  +    +L  L               +L DG+    +    V   +S++ 
Sbjct: 637 LLDEV-EKAHPDVFNLLLQLLD------------DGRLTDGQGRTVDFRNTVVIMTSNLG 683

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK---------CYPELMRDESDRLI 228
           +  I GGA +G     ++         ++       +          + +L  ++  R+ 
Sbjct: 684 SEAITGGAPMGFTADGQMDPDTEQRVMRRLREEFRPEFINRIDEVIVFKQLGEEQLGRIT 743

Query: 229 DMDTVHRDSIQMVENYGIVFLDE 251
            +     +     ++  + F DE
Sbjct: 744 RLLLERTEERLKAQDITVRFTDE 766


>gi|91774863|ref|YP_544619.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
 gi|91708850|gb|ABE48778.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
          Length = 763

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A++ A++                   + L  GPTGVGKT +
Sbjct: 450 KTLERDLKATVFGQDKAIEALSAAIK-----MARSGLGSPNKPIGSFLFSGPTGVGKTEV 504

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +R+LA   G   I+ +++++ E            GYVG     ++ + ++     V    
Sbjct: 505 ARQLAYTLGVELIRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKTPYCVL--L 562

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T N         R  +  +  I +     +  IS 
Sbjct: 563 LDEI-EKAHPDIFNILLQVMDHGTLTDNNG-------RKADFRNVTIIMTTNAGAEAISK 614

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID------MDT 232
             I         +      ++     + ++   V   +  L  +   R++D       D 
Sbjct: 615 TSIGFTLGSNSGDEMGDIKRLFSPEFRNRLDAIVS--FAPLSEEIIVRVVDKFLMQLEDQ 672

Query: 233 VHRDSIQMVENYGI 246
           +H   ++   +  +
Sbjct: 673 LHEKKVEATFSDAL 686


>gi|328713221|ref|XP_001943590.2| PREDICTED: paraplegin-like [Acyrthosiphon pisum]
          Length = 731

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G ++AK+ V   +      + ++            +PK  LL+GP G GKT +++ 
Sbjct: 269 KDVAGLKEAKQEVMEFVDYLKRPDHYKNLGA-------KVPKGALLLGPPGCGKTMLAKA 321

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +A  +  PF+ +  ++F E+  G     V  + ++    +  I+     D +  +
Sbjct: 322 VATESNVPFLSMNGSEFIEMIGGLGAARVRDLFKEGRKRSPCIIYIDEIDAIGRK 376


>gi|299533530|ref|ZP_07046907.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Comamonas
           testosteroni S44]
 gi|298718488|gb|EFI59468.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Comamonas
           testosteroni S44]
          Length = 774

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A   ++ A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 LERDLKSVVFGQDKALEVLSSAVK-----MARSGLGKPDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   +   L +            
Sbjct: 513 QLAYILGVDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTEAVTKKPHSVLLL 569

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 570 DEIEKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAETMNKAT 622

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  +    
Sbjct: 623 IGFTNPREAGDEMGDIKRLFTPEFRNRLDAIVS--FKPLDEQIILRVVDKFLLQLEQQLA 680

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 681 EKKVEVTFSDNLRKHLAKKG 700


>gi|295837953|ref|ZP_06824886.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB74]
 gi|295826759|gb|EFG65025.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB74]
          Length = 855

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ++A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 546 MEEELGRRLIGQKEAVAAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 600

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 601 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 631


>gi|215408571|emb|CAR31135.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|197305085|pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
 gi|197305086|pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
          Length = 357

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 84  EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIASQS 141

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVREQA 126
           GA F  +  +  T   +VG   E+++R L  VA                 S+R +   ++
Sbjct: 142 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
           S   +   L  L G T +S  R +          +++  +I+ A     +    IP   +
Sbjct: 200 SRRIKTEFLVQLDGATTSSEDRILV------VGATNRPQEIDEAARRRLVKRLYIPLPEA 253

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS----IQMVE 242
                  ++   +M   +     +S ++    + + ++    DM  + R++    I+ ++
Sbjct: 254 SA---RKQIVINLMSKEQ---CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307

Query: 243 NYGIVFL--DEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
              I  +  D+   I   D  N     R  V    L L E 
Sbjct: 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYEN 348



 Score = 37.6 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 170 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTDTES 343
               I   A    V R    LPE   R  + ++L S     L++ +   I+  +++
Sbjct: 230 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285


>gi|223939247|ref|ZP_03631128.1| ATP-dependent chaperone ClpB [bacterium Ellin514]
 gi|223892079|gb|EEF58559.1| ATP-dependent chaperone ClpB [bacterium Ellin514]
          Length = 869

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 26/260 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 566 KMEERLQKRVIGQSEAIAAVANAVR------RSRSGLQDPNRPIGSFIFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR--- 123
           +R LA          ++++++++ E   V R V      +       + E+ R       
Sbjct: 620 ARALAEFLFDDENAMVRIDMSEYMEKHAVARLVGAPPGYVGYEEGGQLSEAVRRRPYSVV 679

Query: 124 -----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
                E+A  +    +L  L     T         + R  +  +  I +     S  I  
Sbjct: 680 LFDEIEKAHHDVFNILLQVLDDGRLTDG-------QGRTVDFKNTIIIMTSNIGSPIIQE 732

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
           F   G  S       E   ++      +   ++             ++L  +  +  + +
Sbjct: 733 FYGSGKMSAKGHAEMEQLVRMELKAHFRPEFLNRVDDVIIFHSLNEEQLSHIVDIQLNRL 792

Query: 239 QMVENYGIVFLDEFDKIVAR 258
                   + LD  DK   +
Sbjct: 793 GKRLEQHKLQLD-VDKSAKQ 811


>gi|171463224|ref|YP_001797337.1| ATP-dependent chaperone ClpB [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192762|gb|ACB43723.1| ATP-dependent chaperone ClpB [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 867

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ++A RAV+ A+R      +  A L +E  P  + L +GPTGVGKT +
Sbjct: 568 KMEELLHKRVVGQEEAIRAVSDAIR------RSRAGLAEENRPYGSFLFLGPTGVGKTKL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 622 CKALAGFLFDSEDHLIRIDMSEFMEKHSVAR 652


>gi|163802084|ref|ZP_02195980.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio sp. AND4]
 gi|159174225|gb|EDP59033.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio sp. AND4]
          Length = 756

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+ +LD      + GQ  A  A++ A++             D     + L  GPTG
Sbjct: 447 SDKDILKKLDDKMKMLVFGQDTAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVLKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|145053|gb|AAA23341.1| ATP-dependent protease [Dichelobacter nodosus]
          Length = 731

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L+  ++GQ+ A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 564 LETVLNERVVGQKTAVEAVANAIR------RNRAGLSDPKRPIGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           R LA+         +++++++F E            GYVG +    + + V      V  
Sbjct: 618 RTLAQFLFDSEENMVRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSV-- 675

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 676 VLFDEV-EKAHSDVFNTLLQVL 696


>gi|55820179|ref|YP_138621.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55736164|gb|AAV59806.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus LMG 18311]
          Length = 816

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T +     + SEL + +IGQ +A  A++ A+     R+        +    + + +G
Sbjct: 501 MTQTDSKRYLNLESELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLG 555

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           PTGVGKT +++ LA +     +  ++ +++++ E            GYVG +
Sbjct: 556 PTGVGKTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607


>gi|75812792|ref|YP_320409.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75705548|gb|ABA25220.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 873

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 569 LEEELHKRVIGQDEAVRAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELA 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 623 KALAVYLFDTEDALVRIDMSEYMEKHTVAR 652


>gi|163846611|ref|YP_001634655.1| ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222524408|ref|YP_002568879.1| ATPase AAA-2 domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667900|gb|ABY34266.1| ATPase AAA-2 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448287|gb|ACM52553.1| ATPase AAA-2 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 826

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  A++ A+R      +  + LRD   P  + L VGPTGVGKT ++
Sbjct: 504 MEERLHERVIGQHEAIVALSDAIR------RARSGLRDPRRPIGSFLFVGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN-----VEQIIRDLVDVAI 111
           R LA           +V+++++ E            GYVG +      E I R    V +
Sbjct: 558 RALAEFMFDSEEAMTRVDMSEYQERHTVSRLIGAPPGYVGYDEGGQLTESIRRRPYQVVL 617

Query: 112 NIVRESRRDEV 122
               E    +V
Sbjct: 618 FDEIEKAHRDV 628


>gi|312138354|ref|YP_004005690.1| clp peptidase ATP-binding subunit [Rhodococcus equi 103S]
 gi|311887693|emb|CBH47005.1| putative Clp peptidase ATP-binding subunit [Rhodococcus equi 103S]
          Length = 810

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL R ++GQ+DA +A+A A+R      +    + D   P  + L +GPTGVGKT 
Sbjct: 503 RRLEDELHRRVVGQEDAVKAIARAVR------RSRTGMGDPRRPVGSFLFLGPTGVGKTE 556

Query: 69  ISRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           +++ LA+      +  +++++++F E            GYVG
Sbjct: 557 LAKALAQSLFGDESKMLRLDMSEFGERHTASRLVGAPPGYVG 598



 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 39/252 (15%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM---D 231
            + +F   G   VG   L++  ++ +     K +R+ + +      R  + RL+      
Sbjct: 540 PVGSFLFLGPTGVGKTELAKALAQSLFGDESKMLRLDMSEFGE---RHTASRLVGAPPGY 596

Query: 232 TVHRDSIQMVEN-----YGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLP 277
             + ++ Q+ E      Y ++ LDE +K         +   D G         V      
Sbjct: 597 VGYGEAGQLTEQVRRHPYSVILLDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTV 656

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLK 327
           L+  S++ +   S     + F    A    +P              PE   R    V  +
Sbjct: 657 LIMTSNLGSDIISSKGGALGFTTGDAAATEKPLRDRVMGRLRESFRPEFLNRIDEIVIFR 716

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L       I       L+ + ++ ++ + I ++FT D++D +A+     +    + GAR
Sbjct: 717 KLEAEQLHRIT----DLLLGESRDRLRAQDIDIEFTPDAVDWIAE-----HGHQPEFGAR 767

Query: 388 RLQTVMERVLED 399
            L+  + R ++D
Sbjct: 768 PLRRTIAREVDD 779


>gi|290473957|ref|YP_003466831.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Xenorhabdus bovienii SS-2004]
 gi|289173264|emb|CBJ80039.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Xenorhabdus bovienii SS-2004]
          Length = 761

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   +  A++            ++     + L  GPTGVGKT +
Sbjct: 449 RTLDDRLKMLVFGQDKAIGVLTEAIK-----MSRAGLGQEHKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA++     ++ +++++ E            GYVG +   ++ D +    + 
Sbjct: 504 TLQLAKMLNIKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAIIKHPHS 558


>gi|264678277|ref|YP_003278184.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas
           testosteroni CNB-2]
 gi|262208790|gb|ACY32888.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas
           testosteroni CNB-2]
          Length = 774

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A   ++ A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 LERDLKSVVFGQDKALEVLSSAVK-----MARSGLGKPDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   +   L +            
Sbjct: 513 QLAYILGVDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTEAVTKKPHSVLLL 569

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 570 DEIEKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAETMNKAT 622

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  +    
Sbjct: 623 IGFTNPREAGDEMGDIKRLFTPEFRNRLDAIVS--FKPLDEQIILRVVDKFLLQLEQQLA 680

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 681 EKKVEVTFSDNLRKHLAKKG 700


>gi|258545487|ref|ZP_05705721.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
 gi|258519187|gb|EEV88046.1| chaperone protein ClpB [Cardiobacterium hominis ATCC 15826]
          Length = 856

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L   ++GQ+ A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 561 LESALGARVVGQETAVEAVANAIR------RNRAGLSDPNRPIGSFLFLGPTGVGKTELC 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          +++++++F E   V R
Sbjct: 615 RTLAAFLFDSDEAMVRIDMSEFMEKHSVAR 644


>gi|225571155|ref|ZP_03780153.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
 gi|225159986|gb|EEG72605.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM
           15053]
          Length = 615

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L++  +  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 183 IVDFLKSPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDF 237

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 238 VEM-FVGVGASRV-RDLFEEAKKN 259


>gi|215408565|emb|CAR31132.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408569|emb|CAR31134.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408575|emb|CAR31137.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 162

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 56  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 112


>gi|215408551|emb|CAR31125.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408567|emb|CAR31133.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408573|emb|CAR31136.1| HflB protein [Candidatus Phytoplasma mali]
 gi|215408589|emb|CAR31144.1| HflB protein [Candidatus Phytoplasma pyri]
          Length = 176

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|185178951|ref|ZP_02964709.1| chaperone ClpB [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|184209225|gb|EDU06268.1| chaperone ClpB [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
          Length = 347

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA 77
           ++IGQ +A + ++ A+       +  A + +   P  + L +GPTGVGKT +++ LA+  
Sbjct: 66  HVIGQDEAVKLISDAV------IRGRAGINNPNQPIGSFLFLGPTGVGKTELAKTLAKEL 119

Query: 78  ---GAPFIKVEVTKFTEIGYVGRNVEQIIRDL-VDVAINIVRESRRDEVR-------EQA 126
                  I+ +++++ E   V + V      +  + A  +    +R           E+A
Sbjct: 120 FDSQKALIRFDMSEYMEKHSVSKLVGAPPGYVGYENAGLLTESVKRKPYSILLFDEIEKA 179

Query: 127 SINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             +    +L  L  G    +   E+  K       S+   +  + +  ++          
Sbjct: 180 HPDVLNILLQILDEGSVKDAKNNEINFKNTIIIMTSNVGAEALLENNKTNALMELQKTFK 239

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +  +SE+          K  +  + K    L+++ SD L   D     SI+  +N  
Sbjct: 240 PEILNRISEII------FFNKLSKEVIFKISENLLKELSDLLAKQDY----SIKFNDNIA 289

Query: 246 IVFLDE 251
            + +DE
Sbjct: 290 KIMVDE 295


>gi|157148104|ref|YP_001455423.1| protein disaggregation chaperone [Citrobacter koseri ATCC BAA-895]
 gi|157085309|gb|ABV14987.1| hypothetical protein CKO_03914 [Citrobacter koseri ATCC BAA-895]
          Length = 861

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|156845993|ref|XP_001645885.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116555|gb|EDO18027.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 695

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+     V   L+N  + + L   L     PK IL+ GP G GKT ++R  A
Sbjct: 258 EDVCGCNEARAELEEVVDFLKNPSKYESLGGKL-----PKGILITGPPGTGKTLLARATA 312

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F  +  ++F E+ YVG   ++I RDL   A
Sbjct: 313 GEAGVKFFMMSGSEFDEV-YVGVGAKRI-RDLFTEA 346


>gi|67640886|ref|ZP_00439678.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|251767920|ref|ZP_04820323.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
 gi|254174450|ref|ZP_04881112.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|160695496|gb|EDP85466.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 10399]
 gi|238521691|gb|EEP85141.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei GB8 horse
           4]
 gi|243061367|gb|EES43553.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei PRL-20]
          Length = 659

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 163 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 215

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 216 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 251


>gi|306836997|ref|ZP_07469945.1| chaperone protein ClpB [Corynebacterium accolens ATCC 49726]
 gi|304567115|gb|EFM42732.1| chaperone protein ClpB [Corynebacterium accolens ATCC 49726]
          Length = 683

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ++A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MESVLGERVVGQREAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  ++++++++ E   V R V      +   A   + E+ R  
Sbjct: 620 ALADFLFDDESAMVRIDMSEYGEKHSVSRLVGAPPGYVGHEAGGQLTEAVRRR 672


>gi|297563907|ref|YP_003682880.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848356|gb|ADH70374.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 836

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHRRVIGQEDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 560 KTLAEFLFGDEDALIQLDMSEFMEKHTVSR 589


>gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
 gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus
           sp. WH 8109]
          Length = 599

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL+GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 185 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASRV-RDLFRQA 241


>gi|255065180|ref|ZP_05317035.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           sicca ATCC 29256]
 gi|255050601|gb|EET46065.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           sicca ATCC 29256]
          Length = 761

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 459 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 513

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG +   ++ +  +   + 
Sbjct: 514 SMGVPLQRFDMSEYMEPHAVSRLIGAPPGYVGFDQGGLLTEAANKHPHC 562


>gi|239942967|ref|ZP_04694904.1| putative ATP-dependent protease subunit [Streptomyces roseosporus
           NRRL 15998]
 gi|239989427|ref|ZP_04710091.1| putative ATP-dependent protease subunit [Streptomyces roseosporus
           NRRL 11379]
 gi|291446440|ref|ZP_06585830.1| chaperone protein clpB 1 [Streptomyces roseosporus NRRL 15998]
 gi|291349387|gb|EFE76291.1| chaperone protein clpB 1 [Streptomyces roseosporus NRRL 15998]
          Length = 863

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MESELGKRLIGQTEAVQAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 623 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 653


>gi|261364237|ref|ZP_05977120.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           mucosa ATCC 25996]
 gi|288567474|gb|EFC89034.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           mucosa ATCC 25996]
          Length = 761

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 459 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 513

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG +   ++ +  +   + 
Sbjct: 514 SMGVPLQRFDMSEYMEPHAVSRLIGAPPGYVGFDQGGLLTEAANKHPHC 562


>gi|170056671|ref|XP_001864135.1| paraplegin [Culex quinquefasciatus]
 gi|167876422|gb|EDS39805.1| paraplegin [Culex quinquefasciatus]
          Length = 754

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G Q+AK+ V   +      +R++R           +PK  LL+GP G GKT +++ 
Sbjct: 284 KDVAGLQEAKQEVMEFVDYLKAPDRYQRLGA-------KVPKGALLLGPPGCGKTLLAKA 336

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  A  PF+ +  ++F E+  +G      +RDL   A
Sbjct: 337 VATEAQVPFLSMNGSEFIEM--IGGLGAARVRDLFKEA 372


>gi|154483319|ref|ZP_02025767.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC
           27560]
 gi|149735829|gb|EDM51715.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC
           27560]
          Length = 607

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   L A +     PK ILL GP G GKT +++  A  AG PF  +  + F
Sbjct: 166 IVDFLKNPNKYIMLGARI-----PKGILLEGPPGTGKTLLAKATAGEAGVPFFTISGSDF 220

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL   A   
Sbjct: 221 VEM-FVGVGASRV-RDLFAEAKKN 242


>gi|148264775|ref|YP_001231481.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398275|gb|ABQ26908.1| membrane protease FtsH catalytic subunit [Geobacter uraniireducens
           Rf4]
          Length = 617

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV--- 107
            +PK +LL+GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL    
Sbjct: 191 RIPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQG 248

Query: 108 -DVAINIVRESRRDEV 122
              A  I+     D V
Sbjct: 249 KKSAPCIIFIDEIDAV 264


>gi|138893757|ref|YP_001124210.1| negative regulator of genetic competence ClpC/MecB [Geobacillus
           thermodenitrificans NG80-2]
 gi|196251133|ref|ZP_03149812.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
 gi|134265270|gb|ABO65465.1| Negative regulator of genetic competence ClpC/MecB [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209374|gb|EDY04154.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
          Length = 811

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 47/319 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 502 KLEEILHARVVGQDEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +R LA          I+++++++ E            GYVG     Q+   +     ++V
Sbjct: 556 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVV 615

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G+   S  R V  +       S+   D    +  
Sbjct: 616 LLDEME----KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIIIMTSNVGADALKRNKY 671

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV------QKCYPELMRDESDRL 227
              +  D           + +   K        +I   +      +    +++R  +D L
Sbjct: 672 VGFNIQDGNQQYKDMKGKVMDELKKAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTL 731

Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-------SGNGIGVSREGVQRDLLPLVE 280
           +    +    I +            +KI A               + +    R    L++
Sbjct: 732 VK--RLKEQDIDLELTEAA-----IEKIAAEGFDLEYGARPLRRALQKHIEDRLSEELLK 784

Query: 281 GSSVSTKYGSINTDHILFI 299
           G+    +  +++     F+
Sbjct: 785 GTIAKGQKVAVDVKDGEFV 803



 Score = 37.6 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL K   + I+      L+ +    +K + I L+ TE +I+ +A  
Sbjct: 700 PEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKR----LKEQDIDLELTEAAIEKIAAE 755

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             +L     + GAR L+  +++ +ED
Sbjct: 756 GFDL-----EYGARPLRRALQKHIED 776


>gi|145589928|ref|YP_001156525.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048334|gb|ABP34961.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 768

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 20/115 (17%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R+I S     + GQ  A  A+A A++            + +    + L  GPTGVGKT +
Sbjct: 457 RDIKSV----VFGQDPAIEALASAIK-----MTRAGLGKIDRPIGSFLFSGPTGVGKTEV 507

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   ++ +++++ E            GYVG +   ++ + V+   + 
Sbjct: 508 AKQLAYILGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVNKKPHC 562


>gi|53716929|ref|YP_105706.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei ATCC 23344]
 gi|124383118|ref|YP_001024213.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10229]
 gi|126447417|ref|YP_001078380.1| ATP-dependent metalloprotease FtsH [Burkholderia mallei NCTC 10247]
 gi|254200513|ref|ZP_04906878.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|254204538|ref|ZP_04910891.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|254356833|ref|ZP_04973108.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
 gi|52422899|gb|AAU46469.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           ATCC 23344]
 gi|124291138|gb|ABN00408.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10229]
 gi|126240271|gb|ABO03383.1| ATP-dependent metallopeptidase HflB [Burkholderia mallei NCTC
           10247]
 gi|147748125|gb|EDK55200.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           FMH]
 gi|147754124|gb|EDK61188.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           JHU]
 gi|148025860|gb|EDK83983.1| ATP-dependent metalloprotease, FtsH family [Burkholderia mallei
           2002721280]
          Length = 666

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|24987367|pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
          Length = 278

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F
Sbjct: 55  IVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 110 VEM-FVGVGAARV-RDLFETAKRH 131


>gi|294783790|ref|ZP_06749114.1| cell division protein FtsH [Fusobacterium sp. 1_1_41FAA]
 gi|294480668|gb|EFG28445.1| cell division protein FtsH [Fusobacterium sp. 1_1_41FAA]
          Length = 726

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 10  REIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
            +I       + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GK
Sbjct: 277 EDISDVTFADVAGIDEAKQELKEVVDFLKEPEKFKKIGAKI-----PKGVLLLGEPGTGK 331

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVR 123
           T +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V 
Sbjct: 332 TLLAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFGKARKNAPCIVFIDEIDAVG 390

Query: 124 EQ 125
            +
Sbjct: 391 RK 392


>gi|282892294|ref|ZP_06300690.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497885|gb|EFB40236.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 915

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 3   LTFNFSPREIVSE-----LDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPK 54
           + F  SP +++++       + + G  +A   +      LR+  +   L   +     PK
Sbjct: 405 MNFGKSPAKLMAKGSHKVTFKDVAGIDEALEELQEIVEFLRSPQKFTALGGHI-----PK 459

Query: 55  NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +L +GP G GKT I++ +A  A  PF  +  + F E+ +VG    +I RD+ D A
Sbjct: 460 GVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASRI-RDMFDQA 513


>gi|291303888|ref|YP_003515166.1| ATP-dependent chaperone ClpB [Stackebrandtia nassauensis DSM 44728]
 gi|290573108|gb|ADD46073.1| ATP-dependent chaperone ClpB [Stackebrandtia nassauensis DSM 44728]
          Length = 864

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ  A  AV+ A+R      +  A + DE  P    L  GPTGVGKT ++
Sbjct: 567 MDEELTHRVVGQDRAVAAVSDAVR------RARAGIADENRPTGSFLFCGPTGVGKTELA 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          +++++++++E   V R V      +       + E+ R  
Sbjct: 621 KALASFLFDDERAMVRIDMSEYSERHSVARLVGAPPGYVGHEEGGQLTEAVRRR 674


>gi|255548768|ref|XP_002515440.1| chaperone clpb, putative [Ricinus communis]
 gi|223545384|gb|EEF46889.1| chaperone clpb, putative [Ricinus communis]
          Length = 976

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 654 LEDVLHKRVVGQDMAVKSVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELA 707

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 708 KALAGYLFNTENAMVRIDMSEYMEKHAVSRLV 739


>gi|226502728|ref|NP_001141317.1| hypothetical protein LOC100273408 [Zea mays]
 gi|194703948|gb|ACF86058.1| unknown [Zea mays]
          Length = 490

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 218 DDVAGLDKAKQALMEMVILPSKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 275

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VAI+  
Sbjct: 276 EATFFNVSASSLT-SKWVGE-AEKLVRTLFMVAIDRQ 310


>gi|145297344|ref|YP_001140185.1| chaperone clpB [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850116|gb|ABO88437.1| chaperone clpB [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ++A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDKLHSRVIGQEEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAEFLFDTQDAMVRIDMSEFMEKHSVARLV 647


>gi|111226012|ref|YP_716806.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
 gi|111153544|emb|CAJ65303.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
          Length = 834

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQQ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQQQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDALIQLDMSEYMEKHTVSRLVGS 594


>gi|52425838|ref|YP_088975.1| ClpA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307890|gb|AAU38390.1| ClpA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 856

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEELHKRVIGQGEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|32035169|ref|ZP_00135209.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208559|ref|YP_001053784.1| chaperone ClpB [Actinobacillus pleuropneumoniae L20]
 gi|126097351|gb|ABN74179.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|329955552|ref|ZP_08296460.1| ATP-dependent chaperone protein ClpB [Bacteroides clarus YIT 12056]
 gi|328525955|gb|EGF52979.1| ATP-dependent chaperone protein ClpB [Bacteroides clarus YIT 12056]
          Length = 864

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 20/251 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           + LA           +++++++ E   V R V      +       + E+ R +      
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVL 673

Query: 124 ----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +    +L  L     T N       K     ++       +      ++  
Sbjct: 674 FDEIEKAHPDVFNILLQVLDDGRLTDNKGRTVNFKNTIIIMTSNMGSGYIQSQMEKLNGS 733

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
           +           +  +  K +      +I  ++   +  L   E  +++ +       + 
Sbjct: 734 NKEEIVEETKKEVMNMLKKTIRPEFLNRIDETIM--FLPLTEKEIKQIVVLQIKSVQKML 791

Query: 240 MVENYGIVFLD 250
                 +V  D
Sbjct: 792 SANGVELVLTD 802


>gi|325120488|emb|CBZ56042.1| ATP-dependent metalloprotease involved in cell division, related
           [Neospora caninum Liverpool]
          Length = 996

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK ILL GP G GKT ++R +A  AG PFI    ++F E+ +VG    ++ R L   A
Sbjct: 445 RLPKGILLQGPPGTGKTLLARAIAGEAGVPFIHASGSEFEEM-FVGVGASRL-RQLFAEA 502


>gi|325267605|ref|ZP_08134257.1| chaperone protein ClpB [Kingella denitrificans ATCC 33394]
 gi|324980955|gb|EGC16615.1| chaperone protein ClpB [Kingella denitrificans ATCC 33394]
          Length = 858

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAVA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 564 MEDVLHNRVVGQDEAVRAVADAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V+++++ E   V R
Sbjct: 618 KTLASFLFDSEDHLIRVDMSEYMEKHSVAR 647


>gi|156355121|ref|XP_001623522.1| predicted protein [Nematostella vectensis]
 gi|156210232|gb|EDO31422.1| predicted protein [Nematostella vectensis]
          Length = 640

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 29/189 (15%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G Q+AK  V   +   ++  R  QL A +     PK  LLVGP G GKT +++ +A
Sbjct: 177 KDVAGMQEAKMEVMEFVDYLKSAGRYTQLGAKI-----PKGALLVGPPGTGKTLLAKAVA 231

Query: 75  RLAGAPFIKVEVTKFTEI-GYVG----RNVEQIIRDLVDV--------AINIVRESRRDE 121
             A  PF+ +  + F E+   VG    R++    R L           AI   R+S R  
Sbjct: 232 TEADVPFLSMAGSDFVEMFAGVGSARVRDLFTRARKLAPCIVYIDEVDAIGRSRKSSRSM 291

Query: 122 VREQASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                  N   ++L  + G          A++N  ++    L      D+ I I++    
Sbjct: 292 GGHNEQENTLNQLLVEMDGMNTLDGVIMLASTNRADILDNALLRPGRFDRHIAIDLPTLP 351

Query: 174 SDISNFDIP 182
             +  F++ 
Sbjct: 352 ERMEIFEVH 360


>gi|78184486|ref|YP_376921.1| ATPase [Synechococcus sp. CC9902]
 gi|78168780|gb|ABB25877.1| ATPase [Synechococcus sp. CC9902]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ ++L R +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLETDLHRRVIGQDQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           S+ LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 620 SKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRRR 674


>gi|85707682|ref|ZP_01038748.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
 gi|85689216|gb|EAQ29219.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
          Length = 858

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 24/143 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ S + + +IGQ  A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 561 EMESIIGKRVIGQSQAIEAVSKAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA          +++++++F E            GYVG +   ++ + V      V 
Sbjct: 615 TKALAEFLFDDDQALVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQV- 673

Query: 116 ESRRDEVREQASINAEERILDAL 138
               DEV E+A  +    +L  L
Sbjct: 674 -VLFDEV-EKAHTDVFNVLLQVL 694


>gi|329890890|ref|ZP_08269233.1| ATP-dependent chaperone ClpB [Brevundimonas diminuta ATCC 11568]
 gi|328846191|gb|EGF95755.1| ATP-dependent chaperone ClpB [Brevundimonas diminuta ATCC 11568]
          Length = 861

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL R ++GQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 KMEEELGRRVVGQDEALAAVSDAVR------RARAGLNDPNKPLGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA           +++++++ E   V R
Sbjct: 615 TKALAGYLFDDDNAITRIDMSEYMEKHSVSR 645


>gi|307257140|ref|ZP_07538912.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864302|gb|EFM96213.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|307250341|ref|ZP_07532290.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254986|ref|ZP_07536804.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259422|ref|ZP_07541147.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306857616|gb|EFM89723.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861859|gb|EFM93835.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866358|gb|EFM98221.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|291544177|emb|CBL17286.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
           sp. 18P13]
          Length = 772

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 26/162 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + I+GQ  A  A+A ++      Q+    L+D   P  + LL+GPTGVGKT +
Sbjct: 467 ELEQALKQRIVGQDAAIEAIAASV------QRGRVGLKDPRRPIGSFLLLGPTGVGKTEL 520

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           +R LA          I+++++++ E            GYVG     I+ + V      + 
Sbjct: 521 ARALAVCMFDREDAMIRLDMSEYMEKHSVARLLGSPPGYVGHEEGGILSEAVRARPYSL- 579

Query: 116 ESRRDEVREQASINAEERILDALV--GKTATSNTREVFRKKL 155
               DE+ E+A  +    +L  L     +     R  FR  L
Sbjct: 580 -VLFDEI-EKAHPDVLNILLQILEDGALSDAQGRRVDFRSCL 619


>gi|257457779|ref|ZP_05622940.1| negative regulator of genetic competence ClpC/mecB [Treponema
           vincentii ATCC 35580]
 gi|257444829|gb|EEV19911.1| negative regulator of genetic competence ClpC/mecB [Treponema
           vincentii ATCC 35580]
          Length = 828

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E   EL + IIGQ +A   +A AL     R+        +    + L +GPTGVGKT ++
Sbjct: 500 ETEKELHKTIIGQDEAIGIIANAL-----RRSRAGIASADRPIGSFLFLGPTGVGKTLLA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++ + E   V R V
Sbjct: 555 KALAEFLFGSAEALIRIDMSDYMEKHTVARLV 586


>gi|238921070|ref|YP_002934585.1| protein disaggregation chaperone [Edwardsiella ictaluri 93-146]
 gi|238870639|gb|ACR70350.1| ATP-dependent chaperone protein ClpB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEGELHKRVVGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|229552620|ref|ZP_04441345.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314012|gb|EEN79985.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
           LMS2-1]
          Length = 754

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 445 KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 499

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 500 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 559

Query: 115 RESRRDE 121
                ++
Sbjct: 560 LLDEIEK 566



 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVRE----------QASINAEERIL--DALVGKTAT 144
            ++ +   +L D  I  V E   +++ E          +A   A+ + L  D        
Sbjct: 399 EDMAKKQSNLPDNEIPTVTEKDMEKIVEEKTNIPVGELKAQEQAQLKNLASDLEQHVIGQ 458

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   +   + +R          I    T   I +F   G   VG   L++  +K +    
Sbjct: 459 NEAVDKVARAIRRNR-------IGFNKTGRPIGSFLFVGPTGVGKTELAKQLAKELFGSE 511

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK-- 254
              IR  + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K  
Sbjct: 512 DAMIRFDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAH 568

Query: 255 -------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +   + G         V      ++  S+  +     N      ++     V 
Sbjct: 569 PDVMNMFLQILNDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGATLSGKTHSVL 628

Query: 308 RPAD--LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILD 361
                   PE   RF   V  K L+K D   I++    DT +NL  Q        G+ + 
Sbjct: 629 DQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNLKSQ--------GLTIH 680

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T+   + L  +          +GAR L+ V++  +ED
Sbjct: 681 VTDPVKEKLVTLGY-----NPSMGARPLRRVIQEQIED 713


>gi|210615483|ref|ZP_03290610.1| hypothetical protein CLONEX_02826 [Clostridium nexile DSM 1787]
 gi|210150332|gb|EEA81341.1| hypothetical protein CLONEX_02826 [Clostridium nexile DSM 1787]
          Length = 814

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++   L + +IGQ++A  AVA A+    +R ++   L+D   P  + L +GPTGVGKT 
Sbjct: 502 KKLEQTLHKRVIGQEEAVSAVARAV----KRGRVG--LKDPKRPIGSFLFLGPTGVGKTE 555

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +S+ LA          I+V+++++ E            GYVG +
Sbjct: 556 LSKALAEALFGDENAMIRVDMSEYMEKHSVSKMIGSPPGYVGHD 599


>gi|254439548|ref|ZP_05053042.1| ATPase, AAA family [Octadecabacter antarcticus 307]
 gi|198254994|gb|EDY79308.1| ATPase, AAA family [Octadecabacter antarcticus 307]
          Length = 869

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ  A R+VA A+R      +  A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 562 LHKRVIGQDTAVRSVANAVR------RARAGLNDEGRPLGSFLFLGPTGVGKTELTKAVA 615

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 616 EFLFDDDNAMVRLDMSEFMEKHSVSR 641


>gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 667

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK  +   +   ++  R  ++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 205 VAGAEEAKTELVEIVEFLKDPGRFSRIGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 259

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  ++F E+ +VG    ++ RDL   A
Sbjct: 260 AGVTFFSISASEFIEL-FVGTGAARV-RDLFKQA 291


>gi|153813963|ref|ZP_01966631.1| hypothetical protein RUMTOR_00170 [Ruminococcus torques ATCC 27756]
 gi|317501491|ref|ZP_07959689.1| ATPase AAA-2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088037|ref|ZP_08336958.1| hypothetical protein HMPREF1025_00541 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848359|gb|EDK25277.1| hypothetical protein RUMTOR_00170 [Ruminococcus torques ATCC 27756]
 gi|316897120|gb|EFV19193.1| ATPase AAA-2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408993|gb|EGG88452.1| hypothetical protein HMPREF1025_00541 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 814

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 10/92 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           +++ S L + +IGQ++A +AVA A+    +R ++   L+D   P  + L +GPTGVGKT 
Sbjct: 502 KKLESVLHQRVIGQEEAVKAVARAV----KRGRVG--LKDPKRPIGSFLFLGPTGVGKTE 555

Query: 69  ISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +S+ LA          I+V+++++ E   V +
Sbjct: 556 LSKALAEAMFGNEESMIRVDMSEYMEKHSVSK 587


>gi|90109139|pdb|2CE7|A Chain A, Edta Treated
 gi|90109140|pdb|2CE7|B Chain B, Edta Treated
 gi|90109141|pdb|2CE7|C Chain C, Edta Treated
 gi|90109142|pdb|2CE7|D Chain D, Edta Treated
 gi|90109143|pdb|2CE7|E Chain E, Edta Treated
 gi|90109144|pdb|2CE7|F Chain F, Edta Treated
 gi|90109145|pdb|2CEA|A Chain A, Wildtype
 gi|90109146|pdb|2CEA|B Chain B, Wildtype
 gi|90109147|pdb|2CEA|C Chain C, Wildtype
 gi|90109148|pdb|2CEA|D Chain D, Wildtype
 gi|90109149|pdb|2CEA|E Chain E, Wildtype
 gi|90109150|pdb|2CEA|F Chain F, Wildtype
          Length = 476

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + V   L++  +  ++ A +     PK ILLVGP G GKT ++R +A
Sbjct: 16  KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVA 70

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 71  GEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA 104


>gi|307263757|ref|ZP_07545363.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870878|gb|EFN02616.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|325674654|ref|ZP_08154341.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
 gi|325554240|gb|EGD23915.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
           equi ATCC 33707]
          Length = 810

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 21/102 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +  EL + ++GQ+DA +A+A A+R      +    + D   P  + L +GPTGVGKT 
Sbjct: 503 RRLEDELHQRVVGQEDAVKAIARAVR------RSRTGMGDPRRPVGSFLFLGPTGVGKTE 556

Query: 69  ISRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           +++ LA+      +  +++++++F E            GYVG
Sbjct: 557 LAKALAQSLFGDESKMLRLDMSEFGERHTASRLVGAPPGYVG 598



 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 39/252 (15%)

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM---D 231
            + +F   G   VG   L++  ++ +     K +R+ + +      R  + RL+      
Sbjct: 540 PVGSFLFLGPTGVGKTELAKALAQSLFGDESKMLRLDMSEFGE---RHTASRLVGAPPGY 596

Query: 232 TVHRDSIQMVEN-----YGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLP 277
             + ++ Q+ E      Y ++ LDE +K         +   D G         V      
Sbjct: 597 VGYGEAGQLTEQVRRHPYSVILLDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTV 656

Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRP----------ADLLPEIQGRFPVRVHLK 327
           L+  S++ +   S     + F    A    +P              PE   R    V  +
Sbjct: 657 LIMTSNLGSDIISSKGGALGFTTGDAAATEKPLRDRVMGRLRESFRPEFLNRIDEIVIFR 716

Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387
            L       I       L+ + ++ ++ + I ++FT D++D +A+     +    + GAR
Sbjct: 717 KLEAEQLHRIT----DLLLGESRDRLRAQDIDIEFTPDAVDWIAE-----HGHQPEFGAR 767

Query: 388 RLQTVMERVLED 399
            L+  + R ++D
Sbjct: 768 PLRRTIAREVDD 779


>gi|270289040|ref|ZP_06195342.1| cell division protein FtsH, putative [Chlamydia muridarum Weiss]
          Length = 869

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +   +   +N  +   L   +     PK ILL+G  G GKT I++ +A 
Sbjct: 384 DVAGIEEAKEELVEIVDFLKNPTKFTSLGGRI-----PKGILLIGAPGTGKTLIAKAVAG 438

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    +I RD+ + A
Sbjct: 439 EADRPFFSIAGSDFVEM-FVGVGASRI-RDMFEQA 471


>gi|241557135|ref|XP_002400178.1| ATPase, putative [Ixodes scapularis]
 gi|215501757|gb|EEC11251.1| ATPase, putative [Ixodes scapularis]
          Length = 340

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK++V   +     R  +   LR    PK +LL GP G GKT I + +A  A
Sbjct: 61  DDIAGLEFAKQSVKEMVVWPMLRPDIFTGLRQP--PKGLLLFGPPGTGKTLIGKCIASQA 118

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GA F  +  +  T   +VG   E+++R L  VA
Sbjct: 119 GATFFCISASSLT-SKWVGEG-EKMVRALFAVA 149


>gi|210613790|ref|ZP_03289904.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
 gi|210150999|gb|EEA82007.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787]
          Length = 605

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L++  +  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 172 IVDFLKSPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDF 226

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 227 VEM-FVGVGASRV-RDLFEDAKKH 248


>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
 gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
          Length = 702

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E V      + G  + K+ +      L+N  +  ++ A L     PK ILL G  G G
Sbjct: 241 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKL-----PKGILLSGEPGTG 295

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT I+R +A  A  PFI+   ++F E+ +VG    +I R+L   A   
Sbjct: 296 KTLIARAIAGEANVPFIQASGSEFEEM-FVGVGARRI-RELFQAAKKH 341


>gi|167906504|ref|ZP_02493709.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 666

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|167898139|ref|ZP_02485541.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894]
          Length = 666

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|165976510|ref|YP_001652103.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307261568|ref|ZP_07543236.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165876611|gb|ABY69659.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306868691|gb|EFN00500.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|134283372|ref|ZP_01770072.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
 gi|134245121|gb|EBA45215.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305]
          Length = 666

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|116512318|ref|YP_809534.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107972|gb|ABJ73112.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 867

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AV+ A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ETLHQRVVGQDEAVEAVSDAI------IRARAGIQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 621 LAENLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|83748548|ref|ZP_00945568.1| ClpB protein [Ralstonia solanacearum UW551]
 gi|207743315|ref|YP_002259707.1| chaperone clpb protein [Ralstonia solanacearum IPO1609]
 gi|83724756|gb|EAP71914.1| ClpB protein [Ralstonia solanacearum UW551]
 gi|206594712|emb|CAQ61639.1| chaperone clpb protein [Ralstonia solanacearum IPO1609]
          Length = 862

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A + DE  P  + L +GPTGVGKT + 
Sbjct: 565 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGIADENKPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 619 KALAGFLFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|329666678|gb|AEB92626.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           DPC 6026]
          Length = 708

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 207 IVEFLKNPAKYTKLGARI-----PAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDF 261

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 262 VEM-FVGVGASRV-RDLFETAKKN 283


>gi|303253337|ref|ZP_07339486.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648019|gb|EFL78226.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|289548462|ref|YP_003473450.1| ATPase AAA [Thermocrinis albus DSM 14484]
 gi|289182079|gb|ADC89323.1| ATPase AAA-2 domain protein [Thermocrinis albus DSM 14484]
          Length = 814

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + ++GQ +A +AVA A+R    R ++    R        L +GPTGVGKT  ++
Sbjct: 495 IEEELKKRVVGQDEAIKAVARAIR----RSRVGLKGRH-RPIGVFLFLGPTGVGKTETAK 549

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+ +++++ E   V R V
Sbjct: 550 ALAEYLFGTEDALIRFDMSEYMEKHTVSRLV 580


>gi|260495549|ref|ZP_05815674.1| cell division protein ftsH [Fusobacterium sp. 3_1_33]
 gi|260196891|gb|EEW94413.1| cell division protein ftsH [Fusobacterium sp. 3_1_33]
          Length = 723

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 283 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGQPGTGKTLLAKAVAG 337

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 338 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 389


>gi|300780435|ref|ZP_07090291.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
 gi|300534545|gb|EFK55604.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030]
          Length = 865

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +        +      ++ ++L   +P+ +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVDELQEI-----KDFLQDPEIYEKLGAKIPRGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 254


>gi|227888867|ref|ZP_04006672.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
 gi|227850704|gb|EEJ60790.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200]
          Length = 708

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 207 IVEFLKNPAKYTKLGARI-----PAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDF 261

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 262 VEM-FVGVGASRV-RDLFETAKKN 283


>gi|125623824|ref|YP_001032307.1| ATP-dependent Clp protease [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|146345394|sp|O68185|CLPB_LACLM RecName: Full=Chaperone protein ClpB
 gi|124492632|emb|CAL97579.1| ATP-dependent Clp protease [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070592|gb|ADJ59992.1| ATP-dependent Clp protease [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 867

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AV+ A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ETLHQRVVGQDEAVEAVSDAI------IRARAGIQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 621 LAENLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|3150046|gb|AAC16900.1| ClpB chaperone homolog [Lactococcus lactis subsp. cremoris MG1363]
          Length = 867

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AV+ A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ETLHQRVVGQDEAVEAVSDAI------IRARAGIQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 621 LAENLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|307246005|ref|ZP_07528087.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852940|gb|EFM85163.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|306430679|emb|CBJ17086.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTFLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|256961339|ref|ZP_05565510.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|293383626|ref|ZP_06629535.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis R712]
 gi|293387262|ref|ZP_06631819.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis S613]
 gi|312906175|ref|ZP_07765187.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis DAPTO
           512]
 gi|312909520|ref|ZP_07768375.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis DAPTO
           516]
 gi|256951835|gb|EEU68467.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|291078962|gb|EFE16326.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis R712]
 gi|291083299|gb|EFE20262.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis S613]
 gi|310627821|gb|EFQ11104.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis DAPTO
           512]
 gi|311290193|gb|EFQ68749.1| ATP-dependent chaperone protein ClpB [Enterococcus faecalis DAPTO
           516]
          Length = 868

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHKRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLV 650


>gi|300025033|ref|YP_003757644.1| ATP-dependent chaperone ClpB [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526854|gb|ADJ25323.1| ATP-dependent chaperone ClpB [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 864

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 561 KMEDALSKRVIGQKEAVVAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I+++++++ E   V R
Sbjct: 615 TKALAGYLFDDDTALIRIDMSEYMEKHSVAR 645


>gi|164688260|ref|ZP_02212288.1| hypothetical protein CLOBAR_01905 [Clostridium bartlettii DSM
           16795]
 gi|164602673|gb|EDQ96138.1| hypothetical protein CLOBAR_01905 [Clostridium bartlettii DSM
           16795]
          Length = 864

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ +A  AV+ A+       +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 568 KLEDELHERVIGQNEAVTAVSNAV------IRARAGLKDENKPIGSFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LAR         I+++++++ E   V R V
Sbjct: 622 AKTLARSLFDSEENIIRIDMSEYMEKHSVSRLV 654


>gi|157736713|ref|YP_001489396.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157698567|gb|ABV66727.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 661

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 30/273 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G ++AK  V   +      +R+ R           +PK +LLVGP G GKT +++ 
Sbjct: 194 DDMAGNKEAKEEVQEVVDFLKSPDRYVRLGAQ-------IPKGVLLVGPPGTGKTLLAKA 246

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAE 131
           +A  A   F+ V  + F E+ +VG    ++ RDL + A  +       DE+       A 
Sbjct: 247 VAGEANVEFLSVSGSAFIEM-FVGVGASRV-RDLFEQAKKVAPAIIFIDEIDAIGKSRA- 303

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                +           +   + L + +    E    +   +++      P     G  +
Sbjct: 304 -----SGGPMGGNDEREQTLNQLLAEMDGFSTEHAPVIVLAATNRPEVLDPALLRPGRFD 358

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
              L  K    GR + + + ++         +  + +D+  V + +  +        ++E
Sbjct: 359 RQVLVDKPDYEGRIEILNVHIKD-------VKLGKNVDLKEVAKMTAGLAGADLANIVNE 411

Query: 252 FDKIVARDSGNGIGVS--REGVQRDLLPLVEGS 282
              +  R S N +G    +E V+R +  L + S
Sbjct: 412 AALLAGRASKNEVGPEDFKEAVERQIAGLEKKS 444


>gi|146280846|ref|YP_001170999.1| hypothetical protein PST_0452 [Pseudomonas stutzeri A1501]
 gi|145569051|gb|ABP78157.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 789

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 19  YIIGQQDAKRAVA-IALRNR----WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            +IG  +AK+A++ +    R    + R            PK +LL G  G GKT +++ L
Sbjct: 309 DVIGAAEAKQALSDVTAYLRDPGAYARLGA-------RPPKGVLLTGEPGTGKTQLAKAL 361

Query: 74  ARLAGAPFIKVEVTKFTEIGY-VG-RNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           A  + A FI+V  + F+ + + VG + V+ + R     A  I+     D + ++A  
Sbjct: 362 ASESNASFIQVTGSDFSSMYFGVGIQKVKALFRTARKQAPCIIFIDEIDGIGKRAEQ 418


>gi|61679301|gb|AAX52929.1| ClpB [Bifidobacterium breve UCC2003]
          Length = 894

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A   V+ A+     R+             + L +GPTGVGKT +++
Sbjct: 578 MEDYLSKRVIGQKEAIATVSDAV-----RRSRAGISDPNRPTGSFLFLGPTGVGKTELAK 632

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 633 ALADFLFDDEKAMVRIDMSEYMEKASVSR 661


>gi|27363946|ref|NP_759474.1| ATP-dependent chaperone ClpB [Vibrio vulnificus CMCP6]
 gi|54035847|sp|Q8DEV2|CLPB_VIBVU RecName: Full=Chaperone protein ClpB
 gi|27360063|gb|AAO09001.1| ATP-dependent chaperone ClpB [Vibrio vulnificus CMCP6]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|307248109|ref|ZP_07530137.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855286|gb|EFM87461.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 864

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 569 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 622

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 623 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 654


>gi|292669436|ref|ZP_06602862.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
 gi|292648889|gb|EFF66861.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
          Length = 649

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +AK+ +   +       ++P    +    +PK +LL GP G GKT +++ +A  
Sbjct: 146 DVAGADEAKQELEEVV----EFLKMPDKFNELGARIPKGVLLFGPPGTGKTLLAKAVAGE 201

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG  F  +  + F E+ +VG    ++ RDL + A
Sbjct: 202 AGVQFFTISGSDFVEM-FVGVGASRV-RDLFEQA 233


>gi|283786204|ref|YP_003366069.1| chaperone (heat-shock protein F84.1) [Citrobacter rodentium ICC168]
 gi|282949658|emb|CBG89277.1| chaperone (heat-shock protein F84.1) [Citrobacter rodentium ICC168]
          Length = 857

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|86743058|ref|YP_483458.1| ATPase AAA-2 [Frankia sp. CcI3]
 gi|86569920|gb|ABD13729.1| ATPase AAA-2 [Frankia sp. CcI3]
          Length = 834

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQQ A +AV+ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQQQAIKAVSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V R V  
Sbjct: 561 KTLAEFLFGDEDALIQLDMSEYMEKHTVSRLVGS 594


>gi|78184634|ref|YP_377069.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78168928|gb|ABB26025.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 642

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 186 DDVAGVTEAKQELEEVVTFLKQPERFTSVGAQI-----PRGLLLVGPPGTGKTLLAKAIA 240

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F E+ +VG     V  + +   + +  ++     D V
Sbjct: 241 GEAGVPFFALSGSEFVEM-FVGVGASRVRDLFKKAKENSPCLIFIDEIDAV 290


>gi|78048880|ref|YP_365055.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037310|emb|CAJ25055.1| ATP-dependent Clp protease subunit [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 861

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A + V+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDDLHHRVVGQNEAIKVVSDAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 616 KALADFLFDSTEAMIRIDMSEFMEKHSVAR 645


>gi|302307351|ref|NP_983987.2| ADL109Wp [Ashbya gossypii ATCC 10895]
 gi|299788959|gb|AAS51811.2| ADL109Wp [Ashbya gossypii ATCC 10895]
          Length = 738

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G   AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 445 EIVVRGDEVHWDDIAGLDSAKNSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 502

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  VA
Sbjct: 503 TMLARAVATESHSTFFSISASTLT-SKYLGES-EKLVRALFAVA 544


>gi|271966202|ref|YP_003340398.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270509377|gb|ACZ87655.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 641

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 28/191 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            P+ +++VGP G GKT I+R +A  A  PF+ V  + F E+ +VG    ++ RDL D A 
Sbjct: 219 PPRGVIMVGPPGTGKTLIARAVAGEAAVPFLSVTGSAFVEM-FVGVGASRV-RDLFDEA- 275

Query: 112 NIVRESRRDEVREQASINAEERILDALVGK------TATSNTREVFRKKLRDGEISDKEI 165
                      R +A        +DA+ G+             +   + L + +  D+  
Sbjct: 276 -----------RRRAPSIVFIDEIDAIGGRRGGAVTGGNDEREQTLNQLLAEMDGFDQSS 324

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
            I V   ++     D P     G  +     +  + +  ++   ++V      L  D   
Sbjct: 325 GIVVLAATNRPETLD-PALLRPGRFDRQ--VTVPLPNQVERAAILAVHAAGKHLAPD--- 378

Query: 226 RLIDMDTVHRD 236
             +D+  + R 
Sbjct: 379 --VDLGVIARG 387


>gi|225870479|ref|YP_002746426.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
           subsp. equi 4047]
 gi|225699883|emb|CAW93779.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus equi subsp. equi 4047]
          Length = 699

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEISNRLKGHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDMFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|171318908|ref|ZP_02908041.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
 gi|171095897|gb|EDT40837.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5]
          Length = 516

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            I G  +AK  +   +      +R++R           +PK +L+VG  G GKT ++R +
Sbjct: 51  DIAGIDEAKAELQQIVAFLRSPDRYQRLGG-------KIPKGVLVVGAPGTGKTLLARAV 103

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 104 AGEAAVPFFSISGSAFVEM-FVGVGAARV-RDLFEQA 138


>gi|156973857|ref|YP_001444764.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525451|gb|ABU70537.1| hypothetical protein VIBHAR_01567 [Vibrio harveyi ATCC BAA-1116]
          Length = 756

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ  A  A++ A++             D     + L  GPTG
Sbjct: 447 SDKDILKNLDDKMKMLVFGQDTAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVLKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|326917214|ref|XP_003204896.1| PREDICTED: fidgetin-like protein 1-like [Meleagris gallopavo]
          Length = 688

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 415 DDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 472

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 473 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 507



 Score = 39.1 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 501 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 560

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTD 340
               I   A    V R    LPE   R  +   L S     L++ +  LI+  
Sbjct: 561 RPQEIDEAARRRLVKRLYIPLPEASARRQIVTRLMSKEHSCLSEEEIELIVKQ 613


>gi|317013731|gb|ADU81167.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALDCLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q  E      L+  DKI 
Sbjct: 379 KHQRKEITHGDILEVKDKIA 398


>gi|303250165|ref|ZP_07336367.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252723|ref|ZP_07534614.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651228|gb|EFL81382.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859755|gb|EFM91777.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|268318838|ref|YP_003292494.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
 gi|262397213|emb|CAX66227.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785]
          Length = 708

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 207 IVEFLKNPAKYTKLGARI-----PAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDF 261

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 262 VEM-FVGVGASRV-RDLFETAKKN 283


>gi|150403099|ref|YP_001330393.1| AAA family ATPase [Methanococcus maripaludis C7]
 gi|150034129|gb|ABR66242.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C7]
          Length = 800

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 31/266 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++  + +   +    R  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 177 EDIGGLKEEVKKIREMVELPMRHPELFEKLGIE-PPKGVLLAGPPGTGKTLLAKAVANEA 235

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEV---REQASINAE 131
           GA F  +   +     YVG   E    I  +  + + +I+     D V   R++AS   E
Sbjct: 236 GANFYTINGPELM-SKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVE 294

Query: 132 ER-------ILDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
            R       +LD L G+      A +N  +     LR     D+E+ I + D  +     
Sbjct: 295 RRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMALRRPGRLDRELTIGIPDRHARNEIL 354

Query: 180 -----DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
                ++P         +  L ++++G   + KI   V+        +E  +L   + + 
Sbjct: 355 QIHTRNMPLQPDYEKDEVIPLLNELIGEFDRSKIENIVKLVEKVPSDEEIKKL--PENIE 412

Query: 235 RDSIQMVENYGIVFLDE--FDKIVAR 258
           +  I   E    +  DE   DK+  R
Sbjct: 413 K--IPSGEQIEKILKDEDIEDKVKVR 436



 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G +D K+ +  A+    + +++   +     PK +LL GP G GKT +++ +A  + 
Sbjct: 524 DVGGLEDIKQDLKEAVEWPIKNREMFERMGI-RPPKGVLLFGPPGTGKTLLAKAVANESE 582

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A FI V+  +     +VG +   + +I R     A  ++     D +  +
Sbjct: 583 ANFISVKGPEIF-SKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPK 631


>gi|118086623|ref|XP_001234039.1| PREDICTED: fidgetin-like 1 [Gallus gallus]
          Length = 688

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 415 DDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 472

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 473 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 507



 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI--NTD 294
           ++   +   ++F+DE D ++++        SR      L+ L   ++ S     +   T+
Sbjct: 501 AVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 560

Query: 295 HILFIASGAFH--VSRPADLLPEIQGRFPVRVHLKS-----LNKSDFRLILTD 340
               I   A    V R    LPE   R  +   L S     L++ +  LI+  
Sbjct: 561 RPQEIDEAARRRLVKRLYIPLPEASARKQIVTRLMSKEHSCLSEEEIELIVKQ 613


>gi|116627036|ref|YP_819655.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           thermophilus LMD-9]
 gi|116100313|gb|ABJ65459.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Streptococcus thermophilus LMD-9]
          Length = 816

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M  T +     + SEL + +IGQ +A  A++ A+     R+        +    + + +G
Sbjct: 501 MTQTDSKRYLNLESELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLG 555

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           PTGVGKT +++ LA +     +  ++ +++++ E            GYVG +
Sbjct: 556 PTGVGKTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607


>gi|53722142|ref|YP_111127.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126458626|ref|YP_001075521.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|167723562|ref|ZP_02406798.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei DM98]
 gi|167819698|ref|ZP_02451378.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei 91]
 gi|167849539|ref|ZP_02475047.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           pseudomallei B7210]
 gi|217418885|ref|ZP_03450392.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|237508806|ref|ZP_04521521.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242311752|ref|ZP_04810769.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254190192|ref|ZP_04896701.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193314|ref|ZP_04899748.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|254262317|ref|ZP_04953182.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
 gi|254300451|ref|ZP_04967897.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|310943147|sp|Q3JMH0|FTSH_BURP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|52212556|emb|CAH38582.1| FtsH-2 protease [Burkholderia pseudomallei K96243]
 gi|126232394|gb|ABN95807.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106a]
 gi|157810094|gb|EDO87264.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e]
 gi|157937869|gb|EDO93539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650067|gb|EDS82760.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13]
 gi|217398189|gb|EEC38204.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576]
 gi|235001011|gb|EEP50435.1| putative Cell division protease FtsH homolog [Burkholderia
           pseudomallei MSHR346]
 gi|242134991|gb|EES21394.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1106b]
 gi|254213319|gb|EET02704.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           1710a]
          Length = 666

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|167914858|ref|ZP_02501949.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112]
          Length = 659

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 163 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 215

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 216 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 251


>gi|330446996|ref|ZP_08310647.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491187|dbj|GAA05144.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 858

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVIGQDEAVEAVANAIR------RSRAGLADPQRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|256822309|ref|YP_003146272.1| ATP-dependent chaperone ClpB [Kangiella koreensis DSM 16069]
 gi|256795848|gb|ACV26504.1| ATP-dependent chaperone ClpB [Kangiella koreensis DSM 16069]
          Length = 862

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEDVLHNNVIGQDEAVTAVSNAIR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+         +++++++F E   V R
Sbjct: 616 KTLAKFLFDSEDNMVRIDMSEFMEKHAVAR 645


>gi|239929963|ref|ZP_04686916.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438297|ref|ZP_06577687.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341192|gb|EFE68148.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEEELGRRLIGQTEAVQAVSDAV-----RRSRAGVADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|241068632|ref|XP_002408492.1| ATPase, putative [Ixodes scapularis]
 gi|215492480|gb|EEC02121.1| ATPase, putative [Ixodes scapularis]
          Length = 257

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK  LL+GP G GKT +++ +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 2   IPKGCLLIGPPGTGKTLLAKAIAGEANVPFFNISGSDFVEM-FVGVGASRVRNMFEQGKR 60

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 61  NAPCIIFIDEIDAV 74


>gi|319759043|gb|ADV70985.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis JS14]
          Length = 817

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ++A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 510 LEQELHKRVIGQEEAISAVSRAI-----RRNQSGIRTGHRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 565 ALAEILFDDESALIRFDMSEYMEKFATSRLNGAPPGYVG 603


>gi|307130780|ref|YP_003882796.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Dickeya dadantii 3937]
 gi|306528309|gb|ADM98239.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Dickeya dadantii 3937]
          Length = 758

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L   + GQ  A  A+  A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 RNLGDRLKMLVFGQDKAIEALTEAIK------MSRAGLGHERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 503 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHS 558


>gi|242091832|ref|XP_002436406.1| hypothetical protein SORBIDRAFT_10g001950 [Sorghum bicolor]
 gi|241914629|gb|EER87773.1| hypothetical protein SORBIDRAFT_10g001950 [Sorghum bicolor]
          Length = 490

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 218 DDVAGLDKAKQALMEMVILPTKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 275

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VAI+  
Sbjct: 276 EATFFNVSASSLT-SKWVGE-AEKLVRTLFMVAIDRQ 310


>gi|145346802|ref|XP_001417871.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144578099|gb|ABO96164.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 923

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ +EL + ++GQ +A ++V  A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 614 DLPAELHKRVVGQDEAVQSVCEAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTEL 667

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 668 CKTLANFLFNTEEAMIRIDMSEYMEKHSVSR 698


>gi|126442831|ref|YP_001062570.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|167828076|ref|ZP_02459547.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9]
 gi|226198325|ref|ZP_03793895.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
 gi|126222322|gb|ABN85827.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668]
 gi|225929609|gb|EEH25626.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei
           Pakistan 9]
          Length = 666

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|320353056|ref|YP_004194395.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121558|gb|ADW17104.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 611

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +      LR+  +  +L   +     PK +LL G  G GKT ++R +A
Sbjct: 154 KDVAGIDEAKAELEEIIDFLRDPQKFTKLGGRI-----PKGVLLAGSPGTGKTLLARAIA 208

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 209 GEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFSQGKKNAPCIIFIDEIDAV 258


>gi|261416662|ref|YP_003250345.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373118|gb|ACX75863.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326252|gb|ADL25453.1| protein ClpB [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 855

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A LRNR          R+     + L +GPTGVGKT ++
Sbjct: 557 LDERLHARVIGQDEAVEAVSEAILRNR------SGLSRENAPIGSFLFLGPTGVGKTELA 610

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 611 KALAVELFDSENALVRIDMSEYMEKHSVSR 640


>gi|195432122|ref|XP_002064075.1| GK19973 [Drosophila willistoni]
 gi|194160160|gb|EDW75061.1| GK19973 [Drosophila willistoni]
          Length = 823

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 349 LFRDVAGLSEAKQEVKEFVDYLKTPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 403

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 404 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 455


>gi|219847884|ref|YP_002462317.1| ATPase AAA-2 domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542143|gb|ACL23881.1| ATPase AAA-2 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 403

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 17/102 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           EI   L   I GQ+ A  ++ I + NR R      + R       +L +GPTGVGKTA +
Sbjct: 19  EIERRLRAQIFGQERAIESI-IRVLNRSRYGFSAGNNRRPRAT--LLFLGPTGVGKTATA 75

Query: 71  RRLARLA---GAPFIKVEVTKFTEIG-----------YVGRN 98
           R LA L    G+ F+K++ + F++             YVGR+
Sbjct: 76  RALAELLRPDGSAFLKIDCSLFSQGHEVSALVGAPPSYVGRD 117


>gi|120401674|ref|YP_951503.1| ATPase [Mycobacterium vanbaalenii PYR-1]
 gi|119954492|gb|ABM11497.1| ATPase AAA-2 domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 848

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ++A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRVVGQKNAVQAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|118347433|ref|XP_001007193.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89288960|gb|EAR86948.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 761

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 89/243 (36%), Gaps = 28/243 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I+G  DAKR +  A++   +       + +    + +LL GP G GKT +++ +A   
Sbjct: 247 KDIVGLDDAKRLLKEAVQIPLKYPHFFTGILEPW--RGVLLYGPPGTGKTMLAKAVATEC 304

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------------INIVRESRRDEVRE 124
           G  F  +  +      + G + E++IR L ++A              +I+ + +  +   
Sbjct: 305 GTTFFNISASSVV-SKWRGES-EKLIRVLFELARHYQPSTIFLDELDSIMSQRKGGDNEH 362

Query: 125 QASINAEERILDALVGKTATSN-------TREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
           + S   +  +L  L G             +   +   +      +K I + +    +  +
Sbjct: 363 EGSRRMKTELLIQLDGLMKNKERVFLLAASNLPWDLDVAMLRRLEKRILVPLPSKEARQN 422

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC----YPELMRDESDRLIDMDTV 233
             +      +      +  S+ + +     I++  ++        L+       I+ + +
Sbjct: 423 MIEQFLPEGIAQDLNYQEISEALENYSGSDIKLLCKEAAMKPLRRLINQIEKSNIEQEDI 482

Query: 234 HRD 236
           ++ 
Sbjct: 483 NQS 485


>gi|328479468|gb|EGF48739.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 144

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 16  KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 70

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 71  AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 130

Query: 115 RESRRDE 121
                ++
Sbjct: 131 LLDEIEK 137


>gi|326473365|gb|EGD97374.1| heat shock protein ClpA [Trichophyton tonsurans CBS 112818]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVKSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQEKHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|310642516|ref|YP_003947274.1| vesicle-fusing atpase [Paenibacillus polymyxa SC2]
 gi|309247466|gb|ADO57033.1| Vesicle-fusing ATPase [Paenibacillus polymyxa SC2]
          Length = 500

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 34/201 (16%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP------KNILLVGPTGVGKTAISR 71
             I GQ+ AK+ +  AL           +  DE+        K +LL GP G GKT +++
Sbjct: 71  EEIGGQESAKQELREAL--------DFLNRHDEISKFGIRPLKGVLLTGPPGTGKTLMAK 122

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A    + F+    ++F E+ YVG    ++ R+L   A    R     E +E A I  +
Sbjct: 123 AAAHYTNSVFVAASGSEFVEM-YVGVGAGRV-RELFREA----RTRAAKEKKENAIIFID 176

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           E  +D + GK      RE  +   +     D             I + D P    +   N
Sbjct: 177 E--IDVIGGKREGGQQREYDQTLNQLLTEMD------------GIYSADTPRILLIAATN 222

Query: 192 LSELFSKVMGSGRKKKIRMSV 212
             E+    +    +    + V
Sbjct: 223 RKEMLDSALTRPGRFDRHIQV 243


>gi|302499756|ref|XP_003011873.1| hypothetical protein ARB_01852 [Arthroderma benhamiae CBS 112371]
 gi|291175427|gb|EFE31233.1| hypothetical protein ARB_01852 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVKSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQERHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|163793914|ref|ZP_02187888.1| Chaperone clpB [alpha proteobacterium BAL199]
 gi|159181025|gb|EDP65542.1| Chaperone clpB [alpha proteobacterium BAL199]
          Length = 872

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L + +IGQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 562 METNLHKRVIGQDEAIGAVANAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAEFLFDDEQALVRLDMSEFMEKHAVAR 645


>gi|145510800|ref|XP_001441329.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408576|emb|CAK73932.1| unnamed protein product [Paramecium tetraurelia]
          Length = 403

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 34/191 (17%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G   AK+ +      L++  + + + A LR     + +++ GP G GKT +++  A  
Sbjct: 163 IYGLDHAKKQLQQIIEYLQDPLKYRNVGARLR-----RGVMIYGPPGTGKTMLAKATATE 217

Query: 77  AGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQA------- 126
           +   F+    T+F E+ YVG   + V ++ +     +  I+     D +  +        
Sbjct: 218 SNVNFLYCSATEFIEV-YVGTGPKRVRELFKKARQSSPAIIFIDEIDSIAYKRKNQNFGT 276

Query: 127 -------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                   ++   ++L  L G             N  ++  + L      D +I+I +  
Sbjct: 277 ETGGDNERVSTLNQLLTELDGFKENENIVVIAATNRIQILDEALLRSGRFDIKIEINLPS 336

Query: 172 TSSDISNFDIP 182
            +       + 
Sbjct: 337 ENERKGIMGVH 347


>gi|308799665|ref|XP_003074613.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
 gi|116000784|emb|CAL50464.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
          Length = 659

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G +DAK  +      ++N  + + +   L     P   LLVGP G GKT ++R +A
Sbjct: 360 RDVAGVEDAKAELFELVQIMKNSDKYKNVRGRL-----PSGCLLVGPPGTGKTLLARAVA 414

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +G  F  V  ++F E+ +VGR   ++ R+L   A
Sbjct: 415 GESGVSFFPVAASEFVEL-FVGRGAARV-RELFAEA 448


>gi|319793920|ref|YP_004155560.1| ATP-dependent clp protease, ATP-binding subunit clpa [Variovorax
           paradoxus EPS]
 gi|315596383|gb|ADU37449.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Variovorax
           paradoxus EPS]
          Length = 773

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 93/260 (35%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  ++
Sbjct: 460 IERDLKSVVFGQDKALEVLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEAAK 514

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   +   L +            
Sbjct: 515 QLAYIMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTEAVTKKPHSVLLL 571

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 572 DEIEKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAETMNKAT 624

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L  +   R++D   +  ++   
Sbjct: 625 IGFTNPRQAGDEMGDIKRLFSPEFRNRLDAIVN--FKALDENIILRVVDKFLLQLETQLA 682

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D+  K +A+  
Sbjct: 683 EKKVEVTFSDKLRKHLAKKG 702


>gi|312881919|ref|ZP_07741682.1| clpB protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370437|gb|EFP97926.1| clpB protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 858

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHDRVIGQSEAVEVVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFLFDSETAMVRIDMSEFMEKHSVARLV 647


>gi|120611896|ref|YP_971574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           citrulli AAC00-1]
 gi|120590360|gb|ABM33800.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           citrulli AAC00-1]
          Length = 783

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  ++
Sbjct: 459 IERDLKSVVFGQDKALEVLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEAAK 513

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA + G   I+ +++++ E            GYVG +   ++ + +    +
Sbjct: 514 QLAYILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPH 565


>gi|37678899|ref|NP_933508.1| clpB protein [Vibrio vulnificus YJ016]
 gi|54035791|sp|Q7MNK1|CLPB_VIBVY RecName: Full=Chaperone protein ClpB
 gi|37197640|dbj|BAC93479.1| clpB protein [Vibrio vulnificus YJ016]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|306430697|emb|CBJ17095.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430703|emb|CBJ17098.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430705|emb|CBJ17099.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430707|emb|CBJ17100.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430709|emb|CBJ17101.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430719|emb|CBJ17106.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|306430657|emb|CBJ17075.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430659|emb|CBJ17076.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430665|emb|CBJ17079.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430667|emb|CBJ17080.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430669|emb|CBJ17081.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430747|emb|CBJ17120.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430755|emb|CBJ17124.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|258539996|ref|YP_003174495.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|257151672|emb|CAR90644.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 742

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 433 KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 487

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 488 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 547

Query: 115 RESRRDE 121
                ++
Sbjct: 548 LLDEIEK 554



 Score = 40.7 bits (94), Expect = 0.53,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVRE----------QASINAEERIL--DALVGKTAT 144
            ++ +   +L D  I  V E   +++ E          +A   A+ + L  D        
Sbjct: 387 EDMAKKQSNLPDNEIPTVTEKDMEKIVEEKTNIPVGELKAQEQAQLKNLASDLEQHVIGQ 446

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   +   + +R          I    T   I +F   G   VG   L++  +K +    
Sbjct: 447 NEAVDKVARAIRRNR-------IGFNKTGRPIGSFLFVGPTGVGKTELAKQLAKELFGSE 499

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK-- 254
              IR  + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K  
Sbjct: 500 DAMIRFDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAH 556

Query: 255 -------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +   D G         V      ++  S+  +     N      ++     V 
Sbjct: 557 PDVMNMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGATLSGKTHSVL 616

Query: 308 RPAD--LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILD 361
                   PE   RF   V  K L+K D   I++    DT +NL  Q        G+ + 
Sbjct: 617 DQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNLKSQ--------GLTIH 668

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T+   + L  +          +GAR L+ V++  +ED
Sbjct: 669 VTDPVKEKLVTLGY-----NPSMGARPLRRVIQEQIED 701


>gi|229559938|sp|Q7QBW0|SPAST_ANOGA RecName: Full=Spastin
          Length = 778

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A   
Sbjct: 503 QDIAGQEVAKQALQEMVILPSVRPELFTGLRTP--AKGLLLFGPPGNGKTLLARAVATEC 560

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 561 SATFFSISAATLT-SKYVGDG-EKLVRALFAVA 591


>gi|219110927|ref|XP_002177215.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411750|gb|EEC51678.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 673

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK  +A  + +  ++ +       ++ P+ ++L GP G GKT +++ +A  A
Sbjct: 195 DDVAGCDGAKLELAEVV-DFLKQPEAYTKNGCKI-PRGVILDGPPGTGKTLLAKAVAGEA 252

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PFI +  ++F E+ +VG     V  I       A  I+     D V
Sbjct: 253 GVPFISISGSEFVEM-FVGVGASRVRDIFSQAKKNAPCIIFIDEIDAV 299


>gi|213027793|ref|ZP_03342240.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 415

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 120 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 173

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 174 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 205


>gi|146319629|ref|YP_001199341.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|253752626|ref|YP_003025767.1| stress response-related Clp ATPase [Streptococcus suis SC84]
 gi|253754452|ref|YP_003027593.1| stress response-related Clp ATPase [Streptococcus suis P1/7]
 gi|253756385|ref|YP_003029525.1| stress response-related Clp ATPase [Streptococcus suis BM407]
 gi|145690435|gb|ABP90941.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           suis 05ZYH33]
 gi|251816915|emb|CAZ52564.1| putative stress response-related Clp ATPase [Streptococcus suis
           SC84]
 gi|251818849|emb|CAZ56692.1| putative stress response-related Clp ATPase [Streptococcus suis
           BM407]
 gi|251820698|emb|CAR47460.1| putative stress response-related Clp ATPase [Streptococcus suis
           P1/7]
 gi|292559245|gb|ADE32246.1| ATP-binding subunit: ATP-dependent Clp protease [Streptococcus suis
           GZ1]
          Length = 817

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ++A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 510 LEQELHKRVIGQEEAISAVSRAI-----RRNQSGIRTGHRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 565 ALAEILFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 603


>gi|139438512|ref|ZP_01772028.1| Hypothetical protein COLAER_01021 [Collinsella aerofaciens ATCC
           25986]
 gi|133776051|gb|EBA39871.1| Hypothetical protein COLAER_01021 [Collinsella aerofaciens ATCC
           25986]
          Length = 880

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 109/308 (35%), Gaps = 47/308 (15%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
           S L   IIGQ +A  AVA A+R      +  + L+D   P    + +GPTG GKT +++ 
Sbjct: 528 SVLKTRIIGQDEAVEAVAKAVR------RSRSPLKDPRRPGGSFIFLGPTGTGKTELAKT 581

Query: 73  LARLA---GAPFIKVEVTKF-----------TEIGYVGRNVEQIIRDLVDVAINIVRESR 118
           LA          I  ++++F           +  GYVG +    +   V      V    
Sbjct: 582 LAEYLFGSKDALISFDMSEFGSEFEVSKLIGSPPGYVGHDEGGQLTKAVRRHPYSV--VL 639

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  L          E  R     G+  D    + +  ++     
Sbjct: 640 FDEI-EKAHPDIFNILLQVL----------EEGRLTDSQGKTVDFRNTVIIMTSNVGARE 688

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-------KCYPELMRDESDRLIDMD 231
                    G      L S  +      +++   +              +   + L  + 
Sbjct: 689 IAQDASVGFGTTGEQGLTSSEIKGRAMGELKRLFRPELLNRIDDIVVFQKLSGENLTKIA 748

Query: 232 TVHRDSIQ---MVENYGIVFLD-EFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVS 285
            +  D ++   +     I   D  +DKIVA   D  NG    R  +Q+ +   +    ++
Sbjct: 749 HLLVDDLRQRLIANGMNIKLTDAAYDKIVAEGTDLTNGARPLRRAIQKLIEDPLSEELLA 808

Query: 286 TKYGSINT 293
            ++G  +T
Sbjct: 809 GEWGEGDT 816


>gi|315650241|ref|ZP_07903314.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
 gi|315487486|gb|EFU77795.1| cell division protein FtsH [Eubacterium saburreum DSM 3986]
          Length = 608

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK I+LVGP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +  D  
Sbjct: 199 RIPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASRVRDLFEDAK 257

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 258 KNAPCIIFIDEIDAV 272


>gi|296111612|ref|YP_003621994.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295833144|gb|ADG41025.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 698

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     PK +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKSPKKFVSLGARI-----PKGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 244 EANVPFFSMSGSDFVEM-FVGVGASRV-RDLFENA 276


>gi|311743343|ref|ZP_07717150.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
           marinum DSM 15272]
 gi|311313411|gb|EFQ83321.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
           marinum DSM 15272]
          Length = 837

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 20/223 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEAELGKRVIGQHEAIKALSRAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTWLS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I++++++++E   V R        +             ++VR +  
Sbjct: 560 KTLANFLFGDDDALIQLDMSEYSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 616 SVVLFDEVEKAHPDIFNSLLQILEEGRLTDSQGRVIDFKNTVIIMTTNLGTRDIAKGVNL 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           G   + ++       G   K++  V +   +  R E    +D 
Sbjct: 676 GFSQVGDV------QGSYDKMKAKVSEELKQHFRPEFLNRVDE 712


>gi|258510801|ref|YP_003184235.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477527|gb|ACV57846.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 676

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+       + + ++L   +IGQ +A R VA A+     R+      R +    + L VG
Sbjct: 363 MQADEQAKLKNLEADLAAVVIGQDEAVRQVARAI-----RRSRVGLRRGDRPIGSFLFVG 417

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT ++RRLA +        I+++++++ E   V +
Sbjct: 418 PTGVGKTEMARRLAEILFGSKDAMIRLDMSEYMEKHSVSK 457



 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 109/299 (36%), Gaps = 58/299 (19%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + +R    + +   + +      I +F   G   VG   ++   ++++   +   IR+ +
Sbjct: 387 EAVRQVARAIRRSRVGLRRGDRPIGSFLFVGPTGVGKTEMARRLAEILFGSKDAMIRLDM 446

Query: 213 QKCYPELMRDESDRLIDM---DTVHRDSIQMVEN-----YGIVFLDEFDKIVARDSGNGI 264
            +    + +    +LI        +  + Q+ E      Y ++ +DE +K          
Sbjct: 447 SE---YMEKHSVSKLIGAPPGYVGYEQAGQLTEQVRRHPYSLILVDEIEK---------- 493

Query: 265 GVSREGVQRDLLPLVE-GSSVSTKYGSINTDHILFIASGAFHVSRPADLL---------- 313
             +   VQ   L ++E G    ++  +++    L I +           +          
Sbjct: 494 --AHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTLIIMTSNAGEVERKSHVGFTTKPDEEE 551

Query: 314 --------------PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                         PE   RF   V  + L +++ + I+      ++ + +EL+   G+ 
Sbjct: 552 RVDVDLGDLSAYFKPEFLNRFDAIVRFRPLGQAEVQRIV----ELMLAEVRELLAERGVT 607

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAE 417
           L +TE+++  LA    +        GAR L+  ++  +ED       D + + V +D E
Sbjct: 608 LSWTEEAVHWLAKRGYH-----PAFGARPLRRTVQTYVEDPIADRLIDEEVREVRLDVE 661


>gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
 gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
          Length = 750

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|167770555|ref|ZP_02442608.1| hypothetical protein ANACOL_01901 [Anaerotruncus colihominis DSM
           17241]
 gi|167667150|gb|EDS11280.1| hypothetical protein ANACOL_01901 [Anaerotruncus colihominis DSM
           17241]
          Length = 772

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   IIGQ +A   VA A+R    R Q+ A  R    P + + VGPTGVGKT + + L++
Sbjct: 479 LLERIIGQDEAVSLVAAAVR--RSRVQISARRR----PASFIFVGPTGVGKTELVKVLSK 532

Query: 76  LA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
                  P I++++++F E   V R V      +             ++VR +
Sbjct: 533 ELFDSADPLIRLDMSEFMEKHTVSRLVGSPPGYV----GYDEAGQLTEKVRRK 581



 Score = 43.8 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L PE   R    V  + L+++D+R I     + ++ + K  +  +GI   + +++   +A
Sbjct: 663 LRPEFLARVDEVVVFRPLSEADYRKIA----ALMLGELKAPLAEKGITFGWDDEAAAYIA 718

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDI 400
             AV   S     GAR L+T++ + +ED 
Sbjct: 719 SKAVGGKS-----GARDLRTIIRKEVEDA 742


>gi|167569691|ref|ZP_02362565.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           oklahomensis C6786]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDTEEHLIRIDMSEFMEKHSVAR 651


>gi|323223751|gb|EGA08056.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 415

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 120 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 173

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 174 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 205


>gi|260663745|ref|ZP_05864633.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
 gi|260551796|gb|EEX24912.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN]
          Length = 698

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  + F
Sbjct: 184 IVEFLKNPKKFMRLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 238

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL + A
Sbjct: 239 VEM-FVGVGASRV-RDLFEQA 257


>gi|302544384|ref|ZP_07296726.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462002|gb|EFL25095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 840

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 560 KTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|238927153|ref|ZP_04658913.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
 gi|238884935|gb|EEQ48573.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
          Length = 650

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+   +  +L A +     PK +LL GP G GKT +++ +A 
Sbjct: 147 DVAGADEAKQELEEVVEFLKTPDKFNELGARI-----PKGVLLFGPPGTGKTLLAKAVAG 201

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  + F E+ +VG    ++ RDL + A
Sbjct: 202 EAGVQFFTISGSDFVEM-FVGVGASRV-RDLFEQA 234


>gi|229816586|ref|ZP_04446885.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
 gi|229807921|gb|EEP43724.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM
           13280]
          Length = 747

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  +A   +   +R+       P   R     +P+ +LLVGP G GKT +++ +A 
Sbjct: 214 KDVAGIDEAVEELEE-VRDF---LADPERFRKLGAKIPRGVLLVGPPGTGKTLLAKAVAG 269

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 270 EAGVPFFTISGSEFVEM-FVGVGASRV-RDLFKNA 302


>gi|190150414|ref|YP_001968939.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189915545|gb|ACE61797.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 781

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHSRVIGQNEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|182677816|ref|YP_001831962.1| ATP-dependent chaperone ClpB [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633699|gb|ACB94473.1| ATP-dependent chaperone ClpB [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 562 MEEFLAKRVVGQAEAVKAVSTAVR------RARAGLQDANRPIGSFMFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  ++++++++ E   V R
Sbjct: 616 KALAGFLFDDESALLRIDMSEYMEKHSVAR 645


>gi|161615589|ref|YP_001589554.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364953|gb|ABX68721.1| hypothetical protein SPAB_03370 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 820

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 525 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 578

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 579 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 610


>gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 643

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +      LR+  R   L A +     PK +LLVGP G GKT I++ +A
Sbjct: 188 NDVAGADEEKEELQEIVEFLRDPQRFTALGARI-----PKGVLLVGPPGTGKTLIAKAVA 242

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG  F+ +  + F E+ YVG    ++ RDL D A
Sbjct: 243 GEAGVHFLSISGSDFVEL-YVGVGASRV-RDLFDQA 276


>gi|326531442|dbj|BAJ97725.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 478

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     K +LL GP G GKT +++ +A  +
Sbjct: 206 DDVAGLDKAKQALMEMVILPTKRRDLFTGLRRP--AKGLLLFGPPGNGKTMLAKAVASES 263

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            A F  V  +  T   +VG   E+++R L  VA+
Sbjct: 264 EATFFNVSASSLT-SKWVGE-AEKLVRTLFMVAV 295


>gi|319790046|ref|YP_004151679.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
 gi|317114548|gb|ADU97038.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
          Length = 847

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A +A++ A+R      +  A L+    P  + L +GPTGVGKT ++
Sbjct: 518 MEEELHKRVIGQERAIKAISEAIR------RARAGLQPPNRPLGSFLFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  I+++++++ E   V +
Sbjct: 572 KALAEYLFGDESAIIRLDMSEYMEKHAVSK 601



 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 113/333 (33%), Gaps = 39/333 (11%)

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           AS   EE I   L  +           + ++    + +     +   +  + +F   G  
Sbjct: 504 ASKLQEEEIKKLLRMEEELHKRVIGQERAIKAISEAIRRARAGLQPPNRPLGSFLFLGPT 563

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---------DMDTVHRD 236
            VG   L++  ++ +       IR+ + +    + +    +LI         +      +
Sbjct: 564 GVGKTELAKALAEYLFGDESAIIRLDMSE---YMEKHAVSKLIGAPPGYVGYEEGGQLTE 620

Query: 237 SIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287
           +++  + Y ++ LDE +K         +   D G         V      ++  S+V ++
Sbjct: 621 AVRR-KPYSVILLDEIEKAHPDVFNILLQILDDGRLTDAKGRTVDFSNTVIIMTSNVGSE 679

Query: 288 YGSINTDHILFIASGAFHVSRPADLL----PEIQGRFPVRVHLKSLNKSDFRLILTDTES 343
           Y    +                 +L     PE   R    +    L + + + I+     
Sbjct: 680 YLMNLSKEEFEKNYDKIKEQIMEELKRRFRPEFLNRIDEIIIFHPLAEEEIKKIV----D 735

Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS-- 401
            LI +  + ++  GI +  TE +   LA         V + GAR L+  ++R +E     
Sbjct: 736 LLIAKLNKRLEERGIKVKLTEAAKSELAKRGY-----VPEFGARPLRRTIQREVETPLSV 790

Query: 402 --FSASDLQEKTVVIDAEYVRLHIGDFPSETDM 432
                S  +  TVV+D +  +        + ++
Sbjct: 791 KILEGSVKEGDTVVVDYDKEKGEFTFKVEKEEL 823


>gi|308069462|ref|YP_003871067.1| cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305858741|gb|ADM70529.1| Cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 500

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 39/226 (17%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP------KNILLVGPTGVGKTAISR 71
             I GQ+ AK+ +  AL           +  DE+        K +LL GP G GKT +++
Sbjct: 71  EEIGGQESAKQELREAL--------DFLNRHDEISKFGIRPLKGVLLTGPPGTGKTLMAK 122

Query: 72  RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
             A    + F+    ++F E+ YVG    ++ R+L   A    R     E +E A I  +
Sbjct: 123 AAAHYTNSVFVAASGSEFVEM-YVGVGAGRV-RELFREA----RTRAAKEKKENAIIFID 176

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
           E  +D + GK      RE  +   +     D             I + D P    +   N
Sbjct: 177 E--IDVIGGKREGGQQREYDQTLNQLLTEMD------------GIYSADTPRILIIAATN 222

Query: 192 LSELFSKVMGSGRKKKIRMSV-----QKCYPELMRDESDRLIDMDT 232
             E+    +    +    + V     +     L    +++ I  D 
Sbjct: 223 RKEMLDSALTRPGRFDRHIQVDLPDKKGRLHILKIHATNKPIQEDA 268


>gi|296273901|ref|YP_003656532.1| ATPase AAA-2 domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098075|gb|ADG94025.1| ATPase AAA-2 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           EI S L + + GQ +A +A++ A+    +R        D     + + +GPTGVGKT  +
Sbjct: 564 EIESVLKKDVKGQDEALKAISRAI----KR-NKAGLSDDSKPIGSFMFLGPTGVGKTESA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA+         I+ +++++ E   V R +      +       + E+ R +
Sbjct: 619 KSLAKFLFDDEKSLIRFDMSEYMEKHAVSRLIGAAPGYVGYEEGGQLTEAVRRK 672


>gi|262283594|ref|ZP_06061359.1| ATP-dependent Clp proteinase [Streptococcus sp. 2_1_36FAA]
 gi|262260651|gb|EEY79352.1| ATP-dependent Clp proteinase [Streptococcus sp. 2_1_36FAA]
          Length = 809

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A  A++ A+     R+       ++    + + +GPTGVGKT +++
Sbjct: 505 LEEELHKRVIGQDEAISAISRAI-----RRNQSGIRANKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAETLFDDESALIRFDMSEYMEKFVASRLNGAPPGYVG 598


>gi|255036728|ref|YP_003087349.1| ATP-dependent chaperone ClpB [Dyadobacter fermentans DSM 18053]
 gi|254949484|gb|ACT94184.1| ATP-dependent chaperone ClpB [Dyadobacter fermentans DSM 18053]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + + GQ +A   V+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 557 QLEEHLHQRVAGQNEAIEVVSDAVR------RSRAGLQDAKRPIGSFLFLGPTGVGKTEL 610

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 611 AKTLAEYLFNDENAMVRIDMSEYQERHAVSRLV 643


>gi|226309775|ref|YP_002769669.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
           100599]
 gi|226092723|dbj|BAH41165.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
           100599]
          Length = 815

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A ++++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 505 KMEEILHDRVIGQDEAVKSISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 558

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +R +A          I+V+++++ E            GYVG +
Sbjct: 559 ARAVAETLFGDEDAMIRVDMSEYMEKHSTARLVGAPPGYVGFD 601


>gi|222153838|ref|YP_002563015.1| stress response-related Clp ATPase [Streptococcus uberis 0140J]
 gi|222114651|emb|CAR43700.1| putative stress response-related Clp ATPase [Streptococcus uberis
           0140J]
          Length = 813

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEKELHKRVIGQEDAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA L     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYD 604


>gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
 gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
          Length = 651

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +    
Sbjct: 192 IPKGILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGTGASRVRDMFKTAQK 250

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 251 SAPCIIFIDEIDAV 264


>gi|167562511|ref|ZP_02355427.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           oklahomensis EO147]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDTEEHLIRIDMSEFMEKHSVAR 651


>gi|157146438|ref|YP_001453757.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter koseri
           ATCC BAA-895]
 gi|157083643|gb|ABV13321.1| hypothetical protein CKO_02198 [Citrobacter koseri ATCC BAA-895]
          Length = 758

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|113971326|ref|YP_735119.1| ATPase [Shewanella sp. MR-4]
 gi|114048563|ref|YP_739113.1| ATPase [Shewanella sp. MR-7]
 gi|117921607|ref|YP_870799.1| ATPase [Shewanella sp. ANA-3]
 gi|113886010|gb|ABI40062.1| ATPase AAA-2 domain protein [Shewanella sp. MR-4]
 gi|113890005|gb|ABI44056.1| ATPase AAA-2 domain protein [Shewanella sp. MR-7]
 gi|117613939|gb|ABK49393.1| ATPase AAA-2 domain protein [Shewanella sp. ANA-3]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +      +  +++++++F E   V R V
Sbjct: 620 KFLFDTESALVRIDMSEFMEKHAVSRLV 647


>gi|327438243|dbj|BAK14608.1| ATPase with chaperone activity, ATP-binding subunit [Solibacillus
           silvestris StLB046]
          Length = 814

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 21/223 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 504 LEEELHKRVVGQGEAVEAISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           R LA +        I+V+++++ E     R V      +             ++VR +  
Sbjct: 558 RALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYV----GFDDGGQLTEKVRRKPY 613

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                 +LD +  + A  +   +  + L DG ++D +    V D  + +       GA  
Sbjct: 614 SVV---LLDEI--EKAHPDVFNILLQVLEDGRLTDSK--GRVVDFRNTVVIMTSNVGADA 666

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                   F   + + + K ++ ++ +   +  R E    ID 
Sbjct: 667 LKYRKHVGFGAGLNASKDKDMKSTMLEELKKAFRPEFLNRIDE 709



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   SL K   + I++   ++L  +    +K + I L  T+ +++ +++ 
Sbjct: 701 PEFLNRIDEMIVFHSLEKDHLKEIVSLMANSLKKR----LKEQDIELQLTDAALEKISEE 756

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDAEYVRL 421
             +        GAR L+  +++ +ED           +KT  +  +YV  
Sbjct: 757 GYD-----PQYGARPLRRALQKHVEDRLSEELLKGTLDKTQTVVLDYVND 801


>gi|323359340|ref|YP_004225736.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
 gi|323275711|dbj|BAJ75856.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
           testaceum StLB037]
          Length = 839

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ DA  AVA A+R      +    + DE  P  + L +GPTGVGKT +
Sbjct: 529 QLEDELHARVIGQDDAVTAVAKAVR------RNRTGMGDENRPVGSFLFLGPTGVGKTEL 582

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          I+ ++++F E   V R V
Sbjct: 583 AKALAGSLFDDDGAVIRFDMSEFGERHTVSRLV 615


>gi|320535562|ref|ZP_08035662.1| ATP-dependent chaperone protein ClpB [Treponema phagedenis F0421]
 gi|320147623|gb|EFW39139.1| ATP-dependent chaperone protein ClpB [Treponema phagedenis F0421]
          Length = 860

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + L + ++GQ +A   +A A+     R+             ++L +GPTGVGKT ++
Sbjct: 565 DLENALKKRVVGQDEAVTVIADAI-----RRNKAGLSDANKPLGSLLFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA           +++++++ E   V R
Sbjct: 620 RTLAEFLFNDEKALTRIDMSEYMEKHSVSR 649


>gi|307150870|ref|YP_003886254.1| ATPase AAA-2 domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981098|gb|ADN12979.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7822]
          Length = 790

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   IIGQ +A +AV+ A+R      +    ++D   P  + +  GPTGVGKT ++
Sbjct: 470 LEARLHERIIGQDEAVKAVSRAVR------RARVGMKDPNRPIASFIFAGPTGVGKTELA 523

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I++++++F E   V + +  
Sbjct: 524 KALATFLFGSADAMIRLDMSEFMEPHTVSKLIGS 557


>gi|307274229|ref|ZP_07555437.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
 gi|306509191|gb|EFM78253.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855]
          Length = 725

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 195 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 252

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 253 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 298

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 299 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 346

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 347 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 391

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 392 AQQTPGFAGADLENVLNE 409


>gi|319763342|ref|YP_004127279.1| ATP-dependent clp protease, ATP-binding subunit clpa
           [Alicycliphilus denitrificans BC]
 gi|330825576|ref|YP_004388879.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alicycliphilus denitrificans K601]
 gi|317117903|gb|ADV00392.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alicycliphilus denitrificans BC]
 gi|329310948|gb|AEB85363.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Alicycliphilus denitrificans K601]
          Length = 782

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 LERDLKSVVFGQDKALEVLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   +   L +            
Sbjct: 513 QLAYIMGVDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGL---LTEAVTKKPHAVLLL 569

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           +  E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 570 DEIEKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAETMNKAT 622

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  +    
Sbjct: 623 IGFTTQRQAGDEMGDIKRLFTPEFRNRLDAIVS--FKPLDEQIILRVVDKFLLQLEQQLA 680

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 681 EKKVEVTFTDALRKHLAKKG 700


>gi|261749631|ref|YP_003257317.1| putative heat shock ClpB protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497724|gb|ACX84174.1| putative heat shock ClpB protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 878

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 25/223 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ DA ++VA A+R      +  A L+DE  P  + L +G TGVGKT ++
Sbjct: 566 LEKELHKRVIGQNDAIQSVADAIR------RSRAGLQDEKKPIGSFLFMGSTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          ++++++++ E   V R +      +             + +R +  
Sbjct: 620 KTLAEYLFDNENNMVRIDMSEYMERHSVSRLIGAPPGYI----GYEESGQLTEAIRRRPY 675

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                 +LD +  + A S+   +  + L DG ++D          + + +N  I   +++
Sbjct: 676 SVI---LLDEI--EKAHSDIFNILLQVLDDGRLTDN------KGRTVNFTNTIIIMTSNI 724

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           G   + E     M   R +  + ++      ++R E    ID 
Sbjct: 725 GADIIQENLDTEMSINRMETTKKTLIDLLKNIVRPEFINRIDE 767


>gi|258508818|ref|YP_003171569.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus GG]
 gi|257148745|emb|CAR87718.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           rhamnosus GG]
          Length = 740

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 431 KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 485

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 486 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 545

Query: 115 RESRRDE 121
                ++
Sbjct: 546 LLDEIEK 552



 Score = 39.9 bits (92), Expect = 0.90,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVRE----------QASINAEERIL--DALVGKTAT 144
            ++ +   +L D  I  V E   +++ E          +A   A+ + L  D        
Sbjct: 385 EDMAKKQSNLPDDEIPTVTEKDMEKIVEEKTNIPVGELKAQEQAQLKNLASDLEQHVIGQ 444

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   +   + +R          I    T   I +F   G   VG   L++  +K +    
Sbjct: 445 NEAVDKVARAIRRNR-------IGFNKTGRPIGSFLFVGPTGVGKTELAKQLAKELFGSE 497

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK-- 254
              IR  + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K  
Sbjct: 498 DAMIRFDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAH 554

Query: 255 -------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +   D G         V      ++  S+  +     N      ++     V 
Sbjct: 555 PDVMNMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGATLSGKTHSVL 614

Query: 308 RPAD--LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILD 361
                   PE   RF   V  K L+K D   I++    DT +NL  Q        G+ + 
Sbjct: 615 DQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNLKSQ--------GLTIH 666

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T+   + L  +          +GAR L+ V++  +ED
Sbjct: 667 VTDPVKEKLVTLGY-----NPSMGARPLRRVIQEQIED 699


>gi|254697961|ref|ZP_05159789.1| FtsH, cell division protein FtsH [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 215

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 16  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKK 74

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 75  NAPCIIFIDEIDAV 88


>gi|215408581|emb|CAR31140.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RTLFKEA 116


>gi|32267063|ref|NP_861095.1| ATP-dependent Clp protease ClpB [Helicobacter hepaticus ATCC 51449]
 gi|32263115|gb|AAP78161.1| ATP-dependent CLP protease ClpB [Helicobacter hepaticus ATCC 51449]
          Length = 758

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           S + + ++L   I  Q  A   ++  ++                   + +  GP+GVGKT
Sbjct: 441 SLQNLSAKLKERIFAQDKAIDELSNVIKT-----NKAGLSEGNKPIGSFVFAGPSGVGKT 495

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            +++ LAR+ G  F+K +++++ E            GYVG     ++ D V    + V  
Sbjct: 496 ELAKELARILGIGFVKFDMSEYMESHSISRLIGAPAGYVGFEQGGLLVDAVRKTPHCVL- 554

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
              DE+ E+A  +    +L  L   + T NT
Sbjct: 555 -LFDEI-EKAHHDIYNILLQMLDAASLTDNT 583


>gi|326481939|gb|EGE05949.1| hsp98-like protein [Trichophyton equinum CBS 127.97]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVKSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQEKHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|319654839|ref|ZP_08008914.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
 gi|317393402|gb|EFV74165.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEEILHSRVIGQEEAVKAISKAVR------RARAGLKDPKRPIGSFVFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          I+++++++ E     R V  
Sbjct: 556 RALAEAMFGDEDAMIRIDMSEYMEKHSTSRLVGS 589


>gi|300214102|gb|ADJ78518.1| Negative regulator of genetic competence [Lactobacillus salivarius
           CECT 5713]
          Length = 832

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIR------RARSGLKDPTRPIGSFMFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+++++++ E            GYVG +       L +   N    
Sbjct: 572 KALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYD---EGGQLTEKVRNNPYS 628

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    S  R+V  +       S+        + S  
Sbjct: 629 VVLLDEVEKAHNDVFNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVG 688

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI------D 229
               D+          + E   K        ++  +V   +  L ++E  +++       
Sbjct: 689 FGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVV--FHSLNKEEIHQIVKLMAKNI 746

Query: 230 MDTVHRDSIQMVENYGIVFL 249
           +D +   +I +      + +
Sbjct: 747 IDRIKEQNINLKITPAAIDI 766



 Score = 38.4 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           S  +G+ +        +     +      PE   R    V   SLNK +   I+     N
Sbjct: 686 SVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVVFHSLNKEEIHQIVKLMAKN 745

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +I + KE    + I L  T  +ID +A+   +      + GAR ++ V++  +ED+ 
Sbjct: 746 IIDRIKE----QNINLKITPAAIDIVAEAGFDA-----EYGARPIRRVLQDKIEDLL 793


>gi|300362402|ref|ZP_07058578.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
 gi|300353393|gb|EFJ69265.1| cell division protein FtsH [Lactobacillus gasseri JV-V03]
          Length = 708

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 207 IVEFLKNPAKYTKLGARI-----PAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDF 261

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 262 VEM-FVGVGASRV-RDLFETAKKN 283


>gi|212634067|ref|YP_002310592.1| peptidase M41, FtsH [Shewanella piezotolerans WP3]
 gi|212555551|gb|ACJ28005.1| Peptidase M41, FtsH [Shewanella piezotolerans WP3]
          Length = 647

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   R Q+L   +     P  +LLVGP G GKT I++ +A 
Sbjct: 155 DVAGCDEAKEDVKELVDYLKEPTRFQKLGGRI-----PTGVLLVGPPGTGKTLIAKAIAG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 258


>gi|188995072|ref|YP_001929324.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
 gi|188594752|dbj|BAG33727.1| ClpB protein [Porphyromonas gingivalis ATCC 33277]
          Length = 863

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHKRVIGQDEAIRAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA L     +   +++++++ E            GYVG +
Sbjct: 614 RALAELLFDDESMLTRIDMSEYQEKFSATRLIGAPPGYVGYD 655


>gi|166033186|ref|ZP_02236015.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
 gi|166027543|gb|EDR46300.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC
           27755]
          Length = 612

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+   +  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 183 IVDFLKEPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDF 237

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 238 VEM-FVGVGASRV-RDLFEEAKKN 259


>gi|116628950|ref|YP_814122.1| ATP-dependent Zn protease [Lactobacillus gasseri ATCC 33323]
 gi|238853549|ref|ZP_04643921.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282852628|ref|ZP_06261970.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
 gi|116094532|gb|ABJ59684.1| membrane protease FtsH catalytic subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238833845|gb|EEQ26110.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4]
 gi|282556370|gb|EFB61990.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1]
          Length = 708

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT ++R +A  AG PF  +  + F
Sbjct: 207 IVEFLKNPAKYTKLGARI-----PAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDF 261

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 262 VEM-FVGVGASRV-RDLFETAKKN 283


>gi|34540850|ref|NP_905329.1| clpB protein [Porphyromonas gingivalis W83]
 gi|54035793|sp|Q7MVE7|CLPB_PORGI RecName: Full=Chaperone protein ClpB
 gi|34397164|gb|AAQ66228.1| clpB protein [Porphyromonas gingivalis W83]
          Length = 863

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A RAVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHKRVIGQDEAIRAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA L     +   +++++++ E            GYVG +
Sbjct: 614 RALAELLFDDESMLTRIDMSEYQEKFSATRLIGAPPGYVGYD 655


>gi|126174685|ref|YP_001050834.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS155]
 gi|125997890|gb|ABN61965.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           baltica OS155]
          Length = 755

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  +++ A+     R        D     + L  G TGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIESLSSAI-----RLSRSGLGTDRKPVGSFLFAGTTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA   G   ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TNQLANCLGMKLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 560


>gi|328780549|ref|XP_003249816.1| PREDICTED: caseinolytic peptidase B protein homolog [Apis
           mellifera]
          Length = 528

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 24/181 (13%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L +YI+GQ  A   VA  +R      +      DE  P   L +G +G+GKT +++
Sbjct: 204 LEQRLKQYIVGQAGAISIVASTIR------RKENGWIDEKHPLVFLFLGSSGIGKTELAK 257

Query: 72  RLARLAGAP----FIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           +LA          FI+++++++ E            GYVG +    +  L+    N V  
Sbjct: 258 QLAAYIHKNKQEGFIRLDMSEYQEKHEVAKLIGAPPGYVGHDDGGQLTKLLRKCPNAV-- 315

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV ++A  +    +L        T    ++  +  R  +  D   D+E      +I
Sbjct: 316 VLFDEV-DKAHPDVLTVLLQLFDEGRLTDGKVQLREEAQRVEKKQDINCDVEEDSEQIEI 374

Query: 177 S 177
           S
Sbjct: 375 S 375


>gi|324999572|ref|ZP_08120684.1| ATP-dependent chaperone ClpB [Pseudonocardia sp. P1]
          Length = 276

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ DA  AVA A+     R         +    + L +GP+GVGKT ++R
Sbjct: 71  LEDHLHARVVGQDDAVEAVADAV-----RAGRAGLGHPDRPVGSFLFLGPSGVGKTELAR 125

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRN 98
            LA     +P   ++++++++T+            GYVG +
Sbjct: 126 ALADALFDSPDRIVRLDMSEYTDRASVSRLIGAPPGYVGHD 166


>gi|323452123|gb|EGB07998.1| hypothetical protein AURANDRAFT_71725 [Aureococcus anophagefferens]
          Length = 1039

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 24/144 (16%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDV 109
           P+ ++L GP G GKT ++R +A  AG PFI    ++F E+ +VG        +  D    
Sbjct: 195 PRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRIRSMFGDAKKN 253

Query: 110 AINIVRESRRDEV-REQA-----------SINAEERILDALVGKTATS--------NTRE 149
           A  I+     D + R++A                 +IL  + G +  S        N  +
Sbjct: 254 APCIIFIDEIDAIGRQRASGGGFQGGNDEREQTLNQILTEMDGFSGNSGVIVIAATNRVD 313

Query: 150 VFRKKLRDGEISDKEIDIEVADTS 173
           +  + L      D+ + +++AD +
Sbjct: 314 ILDQALMRPGRFDRNVPVQLADKA 337


>gi|315654259|ref|ZP_07907167.1| chaperone protein ClpB [Mobiluncus curtisii ATCC 51333]
 gi|315491294|gb|EFU80911.1| chaperone protein ClpB [Mobiluncus curtisii ATCC 51333]
          Length = 918

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R +IGQ+DA RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 599 MEEYLGRRLIGQKDAVRAVSNAV-----RRARAGVSDPNRPTGSFLFLGPTGVGKTELAK 653

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA           +++++++ E   V R
Sbjct: 654 ALADFLFDDEKALTRIDMSEYGEKHSVAR 682


>gi|317047539|ref|YP_004115187.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pantoea sp.
           At-9b]
 gi|316949156|gb|ADU68631.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pantoea sp.
           At-9b]
          Length = 759

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           + + +   L   + GQ +A  A+  A++         A L  E  P  + L  GPTGVGK
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK------MSRAGLGQERKPVGSFLFAGPTGVGK 501

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           T ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 TEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|257875631|ref|ZP_05655284.1| chaperone protein clpB [Enterococcus casseliflavus EC20]
 gi|257809797|gb|EEV38617.1| chaperone protein clpB [Enterococcus casseliflavus EC20]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHQRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAVNLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|256956807|ref|ZP_05560978.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256964188|ref|ZP_05568359.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257421554|ref|ZP_05598544.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294779309|ref|ZP_06744712.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|300862072|ref|ZP_07108152.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947303|gb|EEU63935.1| peptidase M41 [Enterococcus faecalis DS5]
 gi|256954684|gb|EEU71316.1| peptidase M41 [Enterococcus faecalis HIP11704]
 gi|257163378|gb|EEU93338.1| cell division protein ftsH [Enterococcus faecalis X98]
 gi|294453595|gb|EFG21994.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1]
 gi|295112550|emb|CBL31187.1| membrane protease FtsH catalytic subunit [Enterococcus sp. 7L76]
 gi|300848597|gb|EFK76354.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD
           Ef11]
 gi|323479478|gb|ADX78917.1| ATP-dependent metallopeptidase, cell division protease ftsH domain
           protein [Enterococcus faecalis 62]
          Length = 718

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 246 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 291

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 292 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 339

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 340 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 384

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 385 AQQTPGFAGADLENVLNE 402


>gi|237732130|ref|ZP_04562611.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter sp.
           30_2]
 gi|226907669|gb|EEH93587.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter sp.
           30_2]
          Length = 760

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + + + L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 450 TLKNLGNRLKMLVFGQDKAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 505 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 560


>gi|255654725|ref|ZP_05400134.1| putative ATP-dependent peptidase [Clostridium difficile QCD-23m63]
          Length = 465

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 36/242 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K  +      +++  + Q++ A +     PK +L  GP G GKT ++  +A
Sbjct: 40  RDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKI-----PKGVLFYGPPGTGKTLLASAVA 94

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
               + F  V  ++F E  YVG     V  +       A +I+     D V  +  + + 
Sbjct: 95  GETNSSFFNVTGSEFVEK-YVGVGAKRVRTLFEKARKEAPSIIFIDEIDAVGAKRHLESN 153

Query: 132 ER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI--------- 167
                    +L  + G    S        N  ++  + L      D+ I I         
Sbjct: 154 NEKDQTLNQLLVEMDGFNKDSNVLIIGATNRLDLLDEALLRPGRFDRHIHIGAPNYHTRF 213

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+    +D    D      +            + +   +    +V+     +  +  D+ 
Sbjct: 214 EILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANEAAIFAVRDDSECITSEHFDKA 273

Query: 228 ID 229
           ++
Sbjct: 274 LE 275


>gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
 gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
          Length = 584

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASRV-RDLFSKA 222


>gi|157150882|ref|YP_001451248.1| ATP-dependent Clp proteinase, ATP-binding chain [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157075676|gb|ABV10359.1| ATP-dependent Clp proteinase, ATP-binding chain [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 809

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A  A++ A+     R+       ++    + + +GPTGVGKT +++
Sbjct: 505 LEEELHKRVIGQDEAISAISRAI-----RRNQSGIRANKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|153824206|ref|ZP_01976873.1| clpB protein [Vibrio cholerae B33]
 gi|126518271|gb|EAZ75496.1| clpB protein [Vibrio cholerae B33]
          Length = 444

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 149 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 202

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 203 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 234


>gi|885934|gb|AAB09631.1| ClpB [Synechococcus elongatus PCC 7942]
          Length = 883

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 577 LDEELHQRVIGQEEAVSAVADAI------QRSRAGLSDPKRPIASFIFLGPTGVGKTELA 630

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 631 KALAAYLFDTEDAMIRIDMSEYMEKHAVSR 660


>gi|15673507|ref|NP_267681.1| ClpB protein [Lactococcus lactis subsp. lactis Il1403]
 gi|54035896|sp|Q9CFF3|CLPB_LACLA RecName: Full=Chaperone protein ClpB
 gi|12724524|gb|AAK05623.1|AE006383_7 ClpB protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326406993|gb|ADZ64064.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Lactococcus
           lactis subsp. lactis CV56]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AV+ A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ETLHQRVVGQDEAVEAVSDAI------IRARAGIQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          ++++++++ E   V R V
Sbjct: 621 LAENLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|327295004|ref|XP_003232197.1| heat shock protein ClpA [Trichophyton rubrum CBS 118892]
 gi|326465369|gb|EGD90822.1| heat shock protein ClpA [Trichophyton rubrum CBS 118892]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVKSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQERHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|320451085|ref|YP_004203181.1| cell division protein FtsH [Thermus scotoductus SA-01]
 gi|320151254|gb|ADW22632.1| cell division protein FtsH [Thermus scotoductus SA-01]
          Length = 627

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT I+R +A  A  PFI    + F
Sbjct: 171 IVEFLKNPARFHEMGARI-----PKGVLLVGPPGVGKTHIARAVAGEAKVPFITASGSDF 225

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 226 VEM-FVGVGAARV-RDLFETAKRH 247


>gi|307327020|ref|ZP_07606210.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887318|gb|EFN18314.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 841

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 560 KTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|307268518|ref|ZP_07549893.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|312952665|ref|ZP_07771529.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|306515179|gb|EFM83719.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248]
 gi|310629453|gb|EFQ12736.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102]
 gi|315032985|gb|EFT44917.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0017]
 gi|315145395|gb|EFT89411.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2141]
 gi|315156269|gb|EFU00286.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0043]
 gi|315160785|gb|EFU04802.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0645]
 gi|315579384|gb|EFU91575.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0630]
 gi|327534062|gb|AEA92896.1| cell division protein FtsH [Enterococcus faecalis OG1RF]
          Length = 725

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 195 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 252

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 253 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 298

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 299 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 346

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 347 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 391

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 392 AQQTPGFAGADLENVLNE 409


>gi|297159363|gb|ADI09075.1| putative ATP-dependent Clp protease [Streptomyces bingchenggensis
           BCW-1]
          Length = 841

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 560 KTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589


>gi|302659150|ref|XP_003021269.1| hypothetical protein TRV_04620 [Trichophyton verrucosum HKI 0517]
 gi|291185159|gb|EFE40651.1| hypothetical protein TRV_04620 [Trichophyton verrucosum HKI 0517]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A ++V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVKSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQERHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|257866003|ref|ZP_05645656.1| chaperone protein clpB [Enterococcus casseliflavus EC30]
 gi|257872336|ref|ZP_05651989.1| chaperone protein clpB [Enterococcus casseliflavus EC10]
 gi|257799937|gb|EEV28989.1| chaperone protein clpB [Enterococcus casseliflavus EC30]
 gi|257806500|gb|EEV35322.1| chaperone protein clpB [Enterococcus casseliflavus EC10]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHQRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAVNLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|302909371|ref|XP_003050058.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730995|gb|EEU44345.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 891

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 93/267 (34%), Gaps = 31/267 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++AK  +   + +  ++ +    L  ++ P+  +L GP G GKT +++  A  +G
Sbjct: 409 DVAGLEEAKTEIMEFV-SFLKQPEKFEKLGAKI-PRGAILAGPPGTGKTLLAKATAGESG 466

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQAS------- 127
            PF  V  ++F E+ +VG     V  +  +    A  I+     D + R +         
Sbjct: 467 VPFFSVSGSEFVEM-FVGVGPSRVRDLFAEGRKNAPCIIFIDEIDAIGRARQESGRGFGG 525

Query: 128 ----INAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
                    +IL  + G          A +N  ++  K L      D+ I I+       
Sbjct: 526 NDEREATLNQILTEMDGFNTREQVVVLAGTNRADMLDKALMRPGRFDRHIFIDRPTMKGR 585

Query: 176 ISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD--RLIDM 230
              F +        V    L    + +        I   V +      R  +D  ++   
Sbjct: 586 QDIFKVYLKKIVTKVDQEYLVGRLATLTPGFSGADIANVVNEAALIAARGNADDVKMDHF 645

Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVA 257
           +      I  +E   +V   E  K VA
Sbjct: 646 ERAIERVIGGLERKSLVLKPEEKKTVA 672


>gi|227540928|ref|ZP_03970977.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183188|gb|EEI64160.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 776

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 266


>gi|78212541|ref|YP_381320.1| ATPase [Synechococcus sp. CC9605]
 gi|78197000|gb|ABB34765.1| ATPase [Synechococcus sp. CC9605]
          Length = 862

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 29/243 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L + +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLEDDLHQRVIGQHKAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S+ LA          ++++++++ E   V R +      +   A   + E+ R   R  A
Sbjct: 620 SKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRR--RPYA 677

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I  +E                +VF   L+         D  V D      +F       
Sbjct: 678 VILFDE----------VEKAHPDVFNVMLQ------ILDDGRVTDGQGRTVDFTNTVLIL 721

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
              +    +        + +     V +      R E    +D D +   S++  E   I
Sbjct: 722 TSNIGSQSILELAGDPEQHRATESRVNEALRAHFRPEFLNRLD-DQIIFHSLRRAELRQI 780

Query: 247 VFL 249
           V L
Sbjct: 781 VTL 783


>gi|332187453|ref|ZP_08389191.1| ATP-dependent metallopeptidase HflB family protein [Sphingomonas
           sp. S17]
 gi|332012614|gb|EGI54681.1| ATP-dependent metallopeptidase HflB family protein [Sphingomonas
           sp. S17]
          Length = 636

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 7   FSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
            + +E     D  + G  +A+  +      L++  +  +L   +     PK  LLVG  G
Sbjct: 143 LTQKEGKVTFDD-VAGIDEAREELQEIVEFLKDPSKFARLGGKI-----PKGALLVGSPG 196

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
            GKT ++R +A  AG PF  +  + F E+ +VG     V  +       A  IV     D
Sbjct: 197 TGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIVFIDEID 255

Query: 121 EV 122
            V
Sbjct: 256 AV 257


>gi|315640793|ref|ZP_07895895.1| chaperone protein ClpB [Enterococcus italicus DSM 15952]
 gi|315483548|gb|EFU74042.1| chaperone protein ClpB [Enterococcus italicus DSM 15952]
          Length = 868

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHQRVIGQDEAVDAVSDAV------LRSRAGLQDPHRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAENLFDSEDHMVRIDMSEYMEKHSVSRLV 650


>gi|306430645|emb|CBJ17069.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|298244152|ref|ZP_06967958.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297551633|gb|EFH85498.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 770

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 37  RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96
           R+ R           +P+  LLVGP G GKT ++R +A  A  PF  +  ++F E+ +VG
Sbjct: 311 RYNRLGA-------RIPRGALLVGPPGTGKTLLARAVAGEAQVPFFSMSASEFVEM-FVG 362

Query: 97  RNVEQIIRDLVDVA 110
               ++ RDL + A
Sbjct: 363 VGASRV-RDLFNQA 375


>gi|296386957|ref|ZP_06876456.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa PAb1]
          Length = 932

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 585 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 639

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 640 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 681


>gi|257088704|ref|ZP_05583065.1| peptidase M41 [Enterococcus faecalis CH188]
 gi|256997516|gb|EEU84036.1| peptidase M41 [Enterococcus faecalis CH188]
          Length = 718

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 246 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 291

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 292 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 339

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 340 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 384

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 385 AQQTPGFAGADLENVLNE 402


>gi|215408545|emb|CAR31122.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|255947392|ref|XP_002564463.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591480|emb|CAP97712.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 531 DDIAGLEAAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 588

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  +  +  T   + G + E+++R L  +A
Sbjct: 589 KSTFFSISASSLT-SKWHGES-EKLVRALFGLA 619


>gi|194333174|ref|YP_002015034.1| ATPase AAA-2 domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194310992|gb|ACF45387.1| ATPase AAA-2 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 849

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 105/281 (37%), Gaps = 45/281 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A R +  A+      Q+  A L+D + P  + + +GPTGVGKT ++
Sbjct: 521 MEDALRKEVIGQDEAIRKITKAI------QRTRAGLKDPMRPIGSFIFLGPTGVGKTELA 574

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 575 KALTRYLFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 634

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + D
Sbjct: 635 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------LGRKVDFRNTIIIMTSNIGAKD 683

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I +     G S G    S            K ++ +V+     +   E    ID DT+  
Sbjct: 684 IKSIGAGMGFSPGDGGDSS----------YKSMKSTVEDALKRVFNPEFLNRID-DTIVF 732

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             ++    + I+ +    K+  R    GI V  E   ++ L
Sbjct: 733 HQLEKKHIFDIIDITS-GKLFKRLHEMGIDVEIEEKAKEFL 772


>gi|149177999|ref|ZP_01856596.1| cell division protein FtsH [Planctomyces maris DSM 8797]
 gi|148843192|gb|EDL57558.1| cell division protein FtsH [Planctomyces maris DSM 8797]
          Length = 664

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +   + AK   + V   L+   + Q+L A +     PK +LL+G  G GKT ++R  A
Sbjct: 199 DDVAAMEQAKAELQEVVEFLKTPAKFQRLGAQI-----PKGVLLMGSPGTGKTLLARATA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  ++F ++ +VG     V  + R   + A  I+     D V
Sbjct: 254 GEAGVPFYSINGSEFIQM-FVGVGASRVRDLFRTAKENAPCIIFVDEIDAV 303


>gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 336

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           EI +     ++G ++AKRA ++ +       + P + RD   PK +L  GPTG GKT  +
Sbjct: 83  EIPNLTLDDVVGHEEAKRACSLLV----EYLKNPEEFRD-WAPKTVLFYGPTGTGKTHTA 137

Query: 71  RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRD 120
           R +A  A  P + +   +     YVG   E+I          A  +      D
Sbjct: 138 RAVAGEAKVPLLHMNAAEILGK-YVGEASERIRRAFTRARKAAPCVFFLDEID 189


>gi|56750469|ref|YP_171170.1| ClpB protein [Synechococcus elongatus PCC 6301]
 gi|56685428|dbj|BAD78650.1| ClpB protein [Synechococcus elongatus PCC 6301]
          Length = 883

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 577 LDEELHQRVIGQEEAVSAVADAI------QRSRAGLSDPKRPIASFIFLGPTGVGKTELA 630

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 631 KALAAYLFDTEDAMIRIDMSEYMEKHAVSR 660


>gi|329577560|gb|EGG58995.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
           faecalis TX1467]
          Length = 700

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 28/249 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT +
Sbjct: 380 ELETILHQRVVGQNEAVEAVSRAIR------RARSGLKDPARPIGSFMFLGPTGVGKTEL 433

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           ++ LA          I+V++++F E            GYVG     Q+   +     +++
Sbjct: 434 AKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQLTEKIRQRPYSVI 493

Query: 115 RESRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                +    +A  +    +L  L  G    +  R+V  +       S+        +  
Sbjct: 494 LLDEVE----KAHPDVFNILLQVLDDGHLTDAKGRKVDFRNTILIMTSNLGATAIREEKH 549

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDESDRLIDMDT 232
              +  DI     +    + E   K        +I  +V      +    E  +++    
Sbjct: 550 VGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSV 609

Query: 233 VHRDSIQMV 241
           V R + Q V
Sbjct: 610 VKRMAEQEV 618


>gi|325995572|gb|ADZ50977.1| Cell division protein [Helicobacter pylori 2018]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFIHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALDCLKIAKVCVGFSGAMLATLINESALNALKHQRNEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 THGDILEVKDKIA 398


>gi|312127443|ref|YP_003992317.1| ATP-dependent chaperone clpb [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777462|gb|ADQ06948.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor hydrothermalis
           108]
          Length = 864

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L R ++GQ +A  AV  A+       +  A ++D   P    L +GPTGVGKT +
Sbjct: 566 ELDKILHRRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGTFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA       +  I++++T++ E   V R
Sbjct: 620 ARALAEALFDSESNMIRIDMTEYMEKHSVSR 650


>gi|315043308|ref|XP_003171030.1| hsp98-like protein [Arthroderma gypseum CBS 118893]
 gi|311344819|gb|EFR04022.1| hsp98-like protein [Arthroderma gypseum CBS 118893]
          Length = 921

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L + +IGQ++A R+V+ A+R   +R    + L +   P + L  GP+G GKT +++
Sbjct: 586 MEQQLSKTVIGQKEAVRSVSNAIRL--KR----SGLSNPNSPPSFLFCGPSGTGKTLLTK 639

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GY+G +    + D +
Sbjct: 640 ALAEFLFDDPNAMIRFDMSEYQERHSLSRMIGAPPGYIGHDAGGQLTDGL 689


>gi|284049288|ref|YP_003399627.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731]
 gi|283953509|gb|ADB48312.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731]
          Length = 847

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + +IGQ +A  AV+ A+       +  A ++D   P  + + +GPTGVGKT +++ 
Sbjct: 556 EILHKRVIGQDEAVEAVSEAV------IRARAGIKDPNKPIGSFIFLGPTGVGKTELAKA 609

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA +        I+++++++ E   V R
Sbjct: 610 LAEVLFNDEKSIIRIDMSEYMEKHTVSR 637


>gi|303311035|ref|XP_003065529.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105191|gb|EER23384.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039331|gb|EFW21265.1| vacuolar sorting protein 4b [Coccidioides posadasii str. Silveira]
          Length = 772

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK+A+  A+   + R  L   LR+    + +LL GP G GK
Sbjct: 474 EIVVRGDEVHWDDIAGLEIAKKALKEAVVYPFLRPDLFMGLREP--ARGMLLFGPPGTGK 531

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  T  T   + G + E+++R L  +A
Sbjct: 532 TMLARAVATESKSTFFSISATSLT-SKWHGES-EKLVRALFALA 573


>gi|254974298|ref|ZP_05270770.1| putative ATP-dependent peptidase [Clostridium difficile QCD-66c26]
 gi|255091695|ref|ZP_05321173.1| putative ATP-dependent peptidase [Clostridium difficile CIP 107932]
 gi|255099796|ref|ZP_05328773.1| putative ATP-dependent peptidase [Clostridium difficile QCD-63q42]
 gi|255305681|ref|ZP_05349853.1| putative ATP-dependent peptidase [Clostridium difficile ATCC 43255]
 gi|255313423|ref|ZP_05355006.1| putative ATP-dependent peptidase [Clostridium difficile QCD-76w55]
 gi|255516110|ref|ZP_05383786.1| putative ATP-dependent peptidase [Clostridium difficile QCD-97b34]
 gi|255649206|ref|ZP_05396108.1| putative ATP-dependent peptidase [Clostridium difficile QCD-37x79]
          Length = 465

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 36/242 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K  +      +++  + Q++ A +     PK +L  GP G GKT ++  +A
Sbjct: 40  RDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKI-----PKGVLFYGPPGTGKTLLASAVA 94

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
               + F  V  ++F E  YVG     V  +       A +I+     D V  +  + + 
Sbjct: 95  GETNSSFFNVTGSEFVEK-YVGVGAKRVRTLFEKARKEAPSIIFIDEIDAVGAKRHLESN 153

Query: 132 ER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI--------- 167
                    +L  + G    S        N  ++  + L      D+ I I         
Sbjct: 154 NEKDQTLNQLLVEMDGFNKDSNVLIIGATNRLDLLDEALLRPGRFDRHIHIGAPNYHTRF 213

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+    +D    D      +            + +   +    +V+     +  +  D+ 
Sbjct: 214 EILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANEAAIFAVRDDSECITSEHFDKA 273

Query: 228 ID 229
           ++
Sbjct: 274 LE 275


>gi|154174286|ref|YP_001408236.1| putative cell division protease FtsH-like protein [Campylobacter
           curvus 525.92]
 gi|112802796|gb|EAU00140.1| putative Cell division protease FtsH-like protein [Campylobacter
           curvus 525.92]
          Length = 556

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 87/237 (36%), Gaps = 28/237 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  D K  ++  +   +N  + +     +     PK +L++GP GVGKT 
Sbjct: 147 ISNVRFDDVAGIDDVKMELSEIVDFLKNPIKYRNFGIKM-----PKGVLMIGPPGVGKTL 201

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--- 122
           +++ +A  A  PF       F +I YVG     V ++       A +I+     D V   
Sbjct: 202 VAKAVAGEANVPFFYQNGASFVQI-YVGMGAKRVRELFNKAKSYAPSIIFIDEIDAVGKS 260

Query: 123 ----REQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
               R         ++L  + G    S        N  E+  + L      D+ I + + 
Sbjct: 261 RGGSRNDEREATLNQLLTEMDGFEDNSGVIVIAATNRIEMIDEALLRSGRFDRRIFLSMP 320

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           D    ++             ++S++ +K+        +   V +     +R+ S+ L
Sbjct: 321 DFKDRMAILKTYLKGKKCEADVSDI-AKMSVGFSGAALSTLVNEAAINALRNGSEIL 376


>gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7]
 gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7]
          Length = 880

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 117/301 (38%), Gaps = 39/301 (12%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  ++K  +      ++NR +  ++ A +     PK +LLVGP G GKT ++R +A
Sbjct: 149 EEIAGIDESKLELLEVVDFIKNREKYHEMGARM-----PKGVLLVGPPGSGKTMLARAVA 203

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVDVAINIVRESRRDEVREQASINAE 131
             A  P+I     +F EI YVG+  ++I         VA +IV     D +  + S    
Sbjct: 204 TEANVPYIYTSGPEFIEI-YVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRS---- 258

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                  V         +   + L + +     + I V   ++ I   D       G  +
Sbjct: 259 ----SGSVNGAGQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDS-ALLRPGRFD 313

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL---------IDMDTVHRDSIQMV- 241
                     +GRKK + + ++K   +L  ++ +++          D++ V  ++  +  
Sbjct: 314 RIVYVPLPDINGRKKILEIYIKKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILAT 373

Query: 242 -ENYGIVFLDEF----DKIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDH 295
             N  +V ++E     DK+        +  S    QR +    E G ++   +    TD 
Sbjct: 374 RNNKSLVTINELYEARDKVSMGPERKSLRQSDH--QRRITAYHEAGHAIVAYFLQPKTDP 431

Query: 296 I 296
           I
Sbjct: 432 I 432


>gi|29374906|ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256618325|ref|ZP_05475171.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256855219|ref|ZP_05560580.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|257081552|ref|ZP_05575913.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|257084200|ref|ZP_05578561.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|257088027|ref|ZP_05582388.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257417630|ref|ZP_05594624.1| peptidase M41 [Enterococcus faecalis AR01/DG]
 gi|257418645|ref|ZP_05595639.1| peptidase M41 [Enterococcus faecalis T11]
 gi|29342364|gb|AAO80130.1| cell division protein FtsH [Enterococcus faecalis V583]
 gi|256597852|gb|EEU17028.1| peptidase M41 [Enterococcus faecalis ATCC 4200]
 gi|256709732|gb|EEU24779.1| cell division protein FtsH [Enterococcus faecalis T8]
 gi|256989582|gb|EEU76884.1| peptidase M41 [Enterococcus faecalis E1Sol]
 gi|256992230|gb|EEU79532.1| cell division protein FtsH [Enterococcus faecalis Fly1]
 gi|256996057|gb|EEU83359.1| peptidase M41 [Enterococcus faecalis D6]
 gi|257159458|gb|EEU89418.1| peptidase M41 [Enterococcus faecalis ARO1/DG]
 gi|257160473|gb|EEU90433.1| peptidase M41 [Enterococcus faecalis T11]
          Length = 718

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 246 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 291

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 292 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 339

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 340 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 384

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 385 AQQTPGFAGADLENVLNE 402


>gi|108803521|ref|YP_643458.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108764764|gb|ABG03646.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 886

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT ++R LA    
Sbjct: 582 VVGQDEAVEAVAEAIR------RARAGLSDPNRPIGSFLFLGPTGVGKTELARTLAEALF 635

Query: 78  --GAPFIKVEVTKFTEIGYVGRNV 99
              A  +++++++F E   V R V
Sbjct: 636 GDEAAMVRIDMSEFQERHTVSRLV 659


>gi|320528647|ref|ZP_08029800.1| ATP-dependent metallopeptidase HflB [Solobacterium moorei F0204]
 gi|320131013|gb|EFW23590.1| ATP-dependent metallopeptidase HflB [Solobacterium moorei F0204]
          Length = 629

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 19  YIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
            + G  + K+ +A  +   ++ ++      R   +PK ILL G  G GKT +++ +A  A
Sbjct: 165 DVAGCDEEKQEMAEIIDYLKYPKKFEKMGAR---IPKGILLSGHPGTGKTLLAKAVAGEA 221

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             PF  +  + F E+ +VG     V  + +     A  I+     D V
Sbjct: 222 NVPFYSISGSDFVEM-FVGVGASRVRDMFKKAQQTAPCIIFIDEIDAV 268


>gi|326316819|ref|YP_004234491.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373655|gb|ADX45924.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 782

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 IERDLKSVVFGQDKALEVLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA + G   I+ +++++ E            GYVG +   ++ + +    +
Sbjct: 513 QLAYILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPH 564


>gi|239980608|ref|ZP_04703132.1| putative ATP-dependent protease subunit [Streptomyces albus J1074]
 gi|291452466|ref|ZP_06591856.1| heat shock protein ClpB [Streptomyces albus J1074]
 gi|291355415|gb|EFE82317.1| heat shock protein ClpB [Streptomyces albus J1074]
          Length = 861

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL R +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEAELGRRLIGQSEAVQAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 651


>gi|228477791|ref|ZP_04062419.1| chaperone protein ClpB 1 [Streptococcus salivarius SK126]
 gi|228250483|gb|EEK09697.1| chaperone protein ClpB 1 [Streptococcus salivarius SK126]
          Length = 816

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 512 LEAELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 566

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  ++ +++++ E            GYVG +
Sbjct: 567 ALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607



 Score = 37.6 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL +   R I+      ++      +  +GI L F   ++  LA  
Sbjct: 709 PEFINRIDEKVVFHSLEEEQLREIVK----IMVKPLVSALAEKGIDLKFQPAALKHLAKD 764

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 765 GYDV-----EMGARPLRRTIQTQVED 785


>gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 977

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|297192907|ref|ZP_06910305.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722625|gb|EDY66533.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 841

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 24/248 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I +++++F+E   V R        +             ++VR +  
Sbjct: 560 KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 616 SVVLFDEVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNL 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV----HRDSIQMVEN 243
           G     ++ S         ++++ V +   +  R E    +D   V      + I  + +
Sbjct: 676 GFAAQGDVKSN------YDRMKVKVNEELKQHFRPEFLNRVDDTVVFHQLTEEDIIQIVD 729

Query: 244 YGIVFLDE 251
             I  +DE
Sbjct: 730 LMIAKVDE 737


>gi|239825665|ref|YP_002948289.1| ATPase AAA [Geobacillus sp. WCH70]
 gi|239805958|gb|ACS23023.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
          Length = 811

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 114/322 (35%), Gaps = 53/322 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 502 KLEEILHSRVVGQDEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +R LA          I+++++++ E            GYVG     Q+   +     ++V
Sbjct: 556 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVV 615

Query: 115 RESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
                +    +A  +    +L  L          E  R     G   D    I +  ++ 
Sbjct: 616 LLDEME----KAHPDVFNILLQVL----------EDGRLTDSKGRTVDFRNTIIIMTSNV 661

Query: 175 DIS----NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                  N  +            ++  KVM   +K      + +    ++    ++    
Sbjct: 662 GADALKRNKYVGFNIQDEDQKYKDMKGKVMDELKKAFRPEFLNRIDEIIVFHSLEKQHLK 721

Query: 231 DTVHRDSIQMVENYGIVFLD------EFDKIVARDSGNGIGV-------SREGVQRDLLP 277
           + V   + Q+V+      +D        +KIV+       G         +    R    
Sbjct: 722 EIVKLMAEQLVKRLKEQDIDLELTDAAIEKIVSEGYDPEYGARPLRRALQKHVEDRLSEE 781

Query: 278 LVEGSSVSTKYGSINTDHILFI 299
           L++G+    +   ++     F+
Sbjct: 782 LLKGTIAKGQKVVVDVKDGEFV 803


>gi|110003920|emb|CAK98260.1| probable cell division protein ftsh [Spiroplasma citri]
          Length = 672

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A       PK +L+ GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 202 LVDYLKNPQKYSSMGA-----RAPKGVLMEGPPGTGKTLLAKAVAGEAGVPFFSISGSEF 256

Query: 90  TEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQ 125
            E+ +VG    +   +       A  I+     D V  +
Sbjct: 257 EEM-FVGVGASRIREMFIAAKKAAPCIIFIDEIDAVGRK 294


>gi|333023515|ref|ZP_08451579.1| putative chaperone [Streptomyces sp. Tu6071]
 gi|332743367|gb|EGJ73808.1| putative chaperone [Streptomyces sp. Tu6071]
          Length = 875

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ++A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 565 KLEEALHSRVVGQEEAVTAVAQAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 620 KALAELLFGDENRMVRFDMSEFQEKHTVSRLV 651


>gi|325570086|ref|ZP_08146011.1| chaperone protein ClpB [Enterococcus casseliflavus ATCC 12755]
 gi|325156914|gb|EGC69085.1| chaperone protein ClpB [Enterococcus casseliflavus ATCC 12755]
          Length = 868

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHQRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAVNLFDSEEHMVRIDMSEYMEKHSVSRLV 650


>gi|320157323|ref|YP_004189702.1| ClpB protein [Vibrio vulnificus MO6-24/O]
 gi|319932635|gb|ADV87499.1| ClpB protein [Vibrio vulnificus MO6-24/O]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQKEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|312904626|ref|ZP_07763781.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|310631978|gb|EFQ15261.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635]
 gi|315036602|gb|EFT48534.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0027]
 gi|315153551|gb|EFT97567.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0031]
 gi|315158586|gb|EFU02603.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0312]
 gi|329577260|gb|EGG58724.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1467]
          Length = 726

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 196 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 253

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 254 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 299

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 300 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 347

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 348 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 392

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 393 AQQTPGFAGADLENVLNE 410


>gi|298246165|ref|ZP_06969971.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
 gi|297553646|gb|EFH87511.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
          Length = 864

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ+ A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEERLRERVVGQEQALEAVSDAIR------RSRAGLQDPNRPLASFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 617 RALAEFLFDDEQAMVRIDMSEYMEKHSVSR 646


>gi|256762060|ref|ZP_05502640.1| peptidase M41 [Enterococcus faecalis T3]
 gi|257078476|ref|ZP_05572837.1| peptidase M41 [Enterococcus faecalis JH1]
 gi|256683311|gb|EEU23006.1| peptidase M41 [Enterococcus faecalis T3]
 gi|256986506|gb|EEU73808.1| peptidase M41 [Enterococcus faecalis JH1]
          Length = 709

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 179 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 236

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 237 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 282

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 283 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 330

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 331 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 375

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 376 AQQTPGFAGADLENVLNE 393


>gi|255971765|ref|ZP_05422351.1| peptidase M41 [Enterococcus faecalis T1]
 gi|255962783|gb|EET95259.1| peptidase M41 [Enterococcus faecalis T1]
          Length = 711

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 181 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 239 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 284

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 285 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 332

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 333 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 377

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 378 AQQTPGFAGADLENVLNE 395


>gi|227891885|ref|ZP_04009690.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
           salivarius ATCC 11741]
 gi|227866348|gb|EEJ73769.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
           salivarius ATCC 11741]
          Length = 832

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIR------RARSGLKDPTRPIGSFMFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+++++++ E            GYVG +       L +   N    
Sbjct: 572 KALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYD---EGGQLTEKVRNNPYS 628

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    S  R+V  +       S+        + S  
Sbjct: 629 VVLLDEVEKAHNDIFNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVG 688

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI------D 229
               D+          + E   K        ++  +V   +  L ++E  +++       
Sbjct: 689 FGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVV--FHSLNKEEIHQIVKLMAKNI 746

Query: 230 MDTVHRDSIQMVENYGIVFL 249
           +D +   +I +      + +
Sbjct: 747 IDRIKEQNINLKITPAAIDI 766



 Score = 38.0 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           S  +G+ +        +     +      PE   R    V   SLNK +   I+     N
Sbjct: 686 SVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVVFHSLNKEEIHQIVKLMAKN 745

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +I + KE    + I L  T  +ID +A+   +      + GAR ++ V++  +ED+ 
Sbjct: 746 IIDRIKE----QNINLKITPAAIDIVAEAGFDA-----EYGARPIRCVLQDKIEDLL 793


>gi|215408547|emb|CAR31123.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|215408543|emb|CAR31121.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|89100727|ref|ZP_01173582.1| class III stress response-related ATPase [Bacillus sp. NRRL
           B-14911]
 gi|89084544|gb|EAR63690.1| class III stress response-related ATPase [Bacillus sp. NRRL
           B-14911]
          Length = 817

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 MEEILHSRVIGQEEAVKAISKAVR------RARAGLKDPKRPIGSFVFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          I+++++++ E     R V  
Sbjct: 556 RALAEAMFGDEDAMIRIDMSEYMEKHSTSRLVGS 589


>gi|116617687|ref|YP_818058.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096534|gb|ABJ61685.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 684

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++   L +++IGQ +A   +A A+R    R  L    R      + L VGPTGVGKT  
Sbjct: 378 KDLDKNLSKHVIGQDEAVEKLAKAIR--RNRIGLTKSGR---PIGSFLFVGPTGVGKTET 432

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           +++LA+         I+ +++++ E            GYVG
Sbjct: 433 AKQLAKEMFGSKDAMIRFDMSEYMEKHTVSKMIGAPAGYVG 473


>gi|326388358|ref|ZP_08209954.1| AAA ATPase, central region [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207090|gb|EGD57911.1| AAA ATPase, central region [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 859

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ+DA  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEDALGKRVIGQKDAVTAVSKAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          +++++++F E            GYVG +   ++ + V      V  
Sbjct: 617 KALAGFMFDDDNAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGVLTEAVRRRPYQV-- 674

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 675 VLFDEV-EKAHQDVFNVLLQVL 695


>gi|319778197|ref|YP_004129110.1| ClpB protein [Taylorella equigenitalis MCE9]
 gi|317108221|gb|ADU90967.1| ClpB protein [Taylorella equigenitalis MCE9]
          Length = 856

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT ++
Sbjct: 560 MEDRLHERVVGQDEAVRLVSDAIR------RSRAGLADPSKPYGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 614 KALANFLFDSDEHMVRIDMSEFMEKHTVAR 643


>gi|313111914|ref|ZP_07797704.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa 39016]
 gi|310884206|gb|EFQ42800.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa 39016]
          Length = 932

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 585 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 639

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 640 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 681


>gi|307290189|ref|ZP_07570107.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
 gi|306498745|gb|EFM68244.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411]
          Length = 728

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 198 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 255

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 256 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 301

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 302 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 349

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 350 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 394

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 395 AQQTPGFAGADLENVLNE 412


>gi|296167815|ref|ZP_06850001.1| chaperone protein ClpB [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897045|gb|EFG76665.1| chaperone protein ClpB [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 848

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+ A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRVIGQKRAVTAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|229550494|ref|ZP_04439219.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|307286956|ref|ZP_07567031.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|312901063|ref|ZP_07760352.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|229304351|gb|EEN70347.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200]
 gi|306501902|gb|EFM71191.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109]
 gi|311291809|gb|EFQ70365.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470]
 gi|315026777|gb|EFT38709.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2137]
 gi|315028816|gb|EFT40748.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4000]
 gi|315147113|gb|EFT91129.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4244]
 gi|315165843|gb|EFU09860.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1302]
 gi|315171402|gb|EFU15419.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1342]
 gi|315172635|gb|EFU16652.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1346]
 gi|315582079|gb|EFU94270.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309A]
          Length = 726

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 196 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 253

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 254 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 299

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 300 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 347

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 348 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 392

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 393 AQQTPGFAGADLENVLNE 410


>gi|227520050|ref|ZP_03950099.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227555911|ref|ZP_03985958.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|307276454|ref|ZP_07557577.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|307278664|ref|ZP_07559734.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|227072598|gb|EEI10561.1| cell division protein FtsH [Enterococcus faecalis TX0104]
 gi|227174968|gb|EEI55940.1| cell division protein FtsH [Enterococcus faecalis HH22]
 gi|306504724|gb|EFM73924.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860]
 gi|306506934|gb|EFM76081.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134]
 gi|315151134|gb|EFT95150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0012]
 gi|315168158|gb|EFU12175.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1341]
 gi|315573573|gb|EFU85764.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309B]
          Length = 725

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 195 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 252

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 253 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 298

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 299 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 346

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 347 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 391

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 392 AQQTPGFAGADLENVLNE 409


>gi|219848748|ref|YP_002463181.1| ATPase AAA-2 domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219543007|gb|ACL24745.1| ATPase AAA-2 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 826

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  A++ A+R      +  + LRD   P  + L VGPTGVGKT ++
Sbjct: 504 MEERLHERVIGQHEAIVALSDAIR------RARSGLRDPRRPIGSFLFVGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN-----VEQIIRDLVDVAI 111
           R LA           +V+++++ E            GYVG +      E + R    V +
Sbjct: 558 RALAEFMFDSEEAMTRVDMSEYQERHTVSRLIGAPPGYVGYDEGGQLTESVRRRPYQVIL 617

Query: 112 NIVRESRRDEV 122
               E    +V
Sbjct: 618 FDEIEKAHRDV 628


>gi|15894242|ref|NP_347591.1| ATP-dependent Zn protease [Clostridium acetobutylicum ATCC 824]
 gi|15023858|gb|AAK78931.1|AE007610_11 ATP-dependent Zn protease [Clostridium acetobutylicum ATCC 824]
 gi|325508370|gb|ADZ20006.1| ATP-dependent Zn protease [Clostridium acetobutylicum EA 2018]
          Length = 582

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK +V      L+N  +     A +     PK ++L G  G GKT +++ +A
Sbjct: 152 NDVAGNEEAKESVQDIIDFLKNPEKYNLYGARM-----PKGVILYGEPGTGKTMLAKAIA 206

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F ++ YVG    +I R L   A
Sbjct: 207 GEANVPFYAMSGSDFIQV-YVGVGASRI-RQLFKKA 240


>gi|325117386|emb|CBZ52938.1| putative cell division protein [Neospora caninum Liverpool]
          Length = 959

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   LR+  + ++L A L     PK +LLVGP G GKTA++R +A
Sbjct: 79  NDLAGLTEAKTELQEVVQFLRDPSKFERLGARL-----PKGVLLVGPPGTGKTALARAVA 133

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG P+     ++F EI YVG+   ++ R L   A N 
Sbjct: 134 TEAGVPYFYASGSEFVEI-YVGQGARRV-RGLFSYARNH 170


>gi|302838606|ref|XP_002950861.1| hypothetical protein VOLCADRAFT_104868 [Volvox carteri f.
           nagariensis]
 gi|300263978|gb|EFJ48176.1| hypothetical protein VOLCADRAFT_104868 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R IIGQ++A  AVA A+      Q+  AD+ D   P  + + +GPTGVGKT ++
Sbjct: 644 LQDELHRRIIGQEEAVDAVAEAV------QRSRADVADLNGPIASFMFLGPTGVGKTELA 697

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 698 KALAAYLFNTEEAMVRLDMSEYMEKHAVSR 727


>gi|260762398|ref|ZP_05874736.1| ATPase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672825|gb|EEX59646.1| ATPase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 213

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 14  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKK 72

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 73  NAPCIIFIDEIDAV 86


>gi|256960612|ref|ZP_05564783.1| peptidase M41 [Enterococcus faecalis Merz96]
 gi|256951108|gb|EEU67740.1| peptidase M41 [Enterococcus faecalis Merz96]
          Length = 718

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 188 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 245

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 246 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 291

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 292 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 339

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 340 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 384

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 385 AQQTPGFAGADLENVLNE 402


>gi|255974765|ref|ZP_05425351.1| peptidase M41 [Enterococcus faecalis T2]
 gi|255967637|gb|EET98259.1| peptidase M41 [Enterococcus faecalis T2]
          Length = 711

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 181 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 238

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 239 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 284

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 285 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 332

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 333 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 377

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 378 AQQTPGFAGADLENVLNE 395


>gi|253688099|ref|YP_003017289.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754677|gb|ACT12753.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 757

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A++ +++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 KNLSDRLKMLVFGQDKAIEALSESIK------MSRAGLGQERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|227112013|ref|ZP_03825669.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 757

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A++ +++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 KNLSDRLKMLVFGQDKAIEALSESIK------MSRAGLGQERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|88770803|gb|ABD52004.1| ClpB [Methanohalophilus portucalensis FDF-1]
          Length = 869

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 566 LEDRLHERVIGQNEAVKAVSDAV------IRAQAGIKDPRRPIGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V+++++ E   V R
Sbjct: 620 KALATELFDSEDHMIRVDMSEYMEKHTVAR 649


>gi|107099444|ref|ZP_01363362.1| hypothetical protein PaerPA_01000456 [Pseudomonas aeruginosa PACS2]
          Length = 932

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 585 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 639

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 640 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 681


>gi|81299898|ref|YP_400106.1| ATPase [Synechococcus elongatus PCC 7942]
 gi|81168779|gb|ABB57119.1| ATPase [Synechococcus elongatus PCC 7942]
          Length = 883

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 577 LDEELHQRVIGQEEAVSAVADAI------QRSRAGLSDPKRPIASFIFLGPTGVGKTELA 630

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 631 KALAAYLFDTEDAMIRIDMSEYMEKHAVSR 660


>gi|317181629|dbj|BAJ59413.1| cell division protein [Helicobacter pylori F57]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQNLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q +E      L+  DKI 
Sbjct: 379 KHQRIEITEGDILEVKDKIA 398


>gi|227329246|ref|ZP_03833270.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 757

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A++ +++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 KNLSDRLKMLVFGQDKAIEALSESIK------MSRAGLGQERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|163841921|ref|YP_001626326.1| hemolysin [Renibacterium salmoninarum ATCC 33209]
 gi|162955397|gb|ABY24912.1| negative regulator of genetic competence [Renibacterium
           salmoninarum ATCC 33209]
          Length = 830

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A ++++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 508 KMEDELHKRVVGQDEAIKSLSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I +++++++E   V R
Sbjct: 562 AKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|313889140|ref|ZP_07822796.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844880|gb|EFR32285.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 652

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L++  +   + A +     PK +LLVGP G GKT +S+ +A  AG PF  +  + F
Sbjct: 179 IVDFLKDPKKFINMGARI-----PKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDF 233

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 234 VEM-FVGVGASRV-RDLFESAKKN 255


>gi|312958896|ref|ZP_07773415.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Pseudomonas
           fluorescens WH6]
 gi|311286666|gb|EFQ65228.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Pseudomonas
           fluorescens WH6]
          Length = 854

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT +
Sbjct: 561 KMEHLLHQRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|302829945|ref|XP_002946539.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f.
           nagariensis]
 gi|300268285|gb|EFJ52466.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f.
           nagariensis]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ  A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ 
Sbjct: 541 EELHKRVIGQDGAVEAVADAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTELAKA 594

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA+         ++++++++ E   V R
Sbjct: 595 LAQFLFNTEDAMVRIDMSEYMEKHSVSR 622


>gi|299132195|ref|ZP_07025390.1| ATP-dependent chaperone ClpB [Afipia sp. 1NLS2]
 gi|298592332|gb|EFI52532.1| ATP-dependent chaperone ClpB [Afipia sp. 1NLS2]
          Length = 877

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A RAV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 561 MEDMLGKRVIGQAQAVRAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 615 KALAEYLFDDETALVRMDMSEYMEKHSVAR 644


>gi|224372903|ref|YP_002607275.1| ATPase Zn protease [Nautilia profundicola AmH]
 gi|223589089|gb|ACM92825.1| ATPase EC ATP-dependent Zn protease [Nautilia profundicola AmH]
          Length = 494

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 27/174 (15%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  + K  +   +   +N  + +    +L     PK +LLVGP GVGKT I++ LA
Sbjct: 96  DDVAGISEVKEELVEIVDFLKNPDKYKAFGIEL-----PKGVLLVGPPGVGKTLIAKALA 150

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-------RE 124
             AG PF     + F ++ YVG     V  +       A +I+     D +       R 
Sbjct: 151 GEAGVPFFYQSGSSFVQM-YVGVGAKRVRDLFTKAKATAPSIIFIDEIDAIGKSRGNLRN 209

Query: 125 QASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVA 170
                   ++L  + G   +S        N  E+  + L      D+ I +E+ 
Sbjct: 210 DEREATLNQLLTEMDGFEGSSGVIVIGATNKVELLDEALLRPGRFDRRIYVELP 263


>gi|124804008|ref|XP_001347874.1| peptidase, putative [Plasmodium falciparum 3D7]
 gi|23496126|gb|AAN35787.1| peptidase, putative [Plasmodium falciparum 3D7]
          Length = 1052

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   +N  + + L A +     PK  LL G  G GKT +++ +A  
Sbjct: 471 VAGMKQAKEEIMEFVDFLKNPTKYEILGAKI-----PKGALLCGAPGTGKTLLAKAVAGE 525

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 526 ANVPFFNISGSDFIEV-FVGIGPSRVRELFAQARKHAPSIIFIDEIDAVGRK 576


>gi|28377431|ref|NP_784323.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|254555614|ref|YP_003062031.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308179644|ref|YP_003923772.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|81586545|sp|Q88Z31|FTSH_LACPL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|310943135|sp|C6VKW6|FTSH_LACPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|28270263|emb|CAD63164.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum WCFS1]
 gi|51537265|gb|AAU05734.1| FtsH [Lactobacillus plantarum]
 gi|254044541|gb|ACT61334.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum JDM1]
 gi|308045135|gb|ADN97678.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 745

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 RIPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 275

Query: 111 INI 113
              
Sbjct: 276 KKN 278


>gi|330984323|gb|EGH82426.1| AAA ATPase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 681

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 16/213 (7%)

Query: 9   PREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P+ +   LD  + G +D K  +      + NR   ++   D      P N++L GP GVG
Sbjct: 200 PKNLDDSLDDLV-GLKDVKDELLQLQEMIENRKLYREYAVD-----KPFNVMLTGPAGVG 253

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           KT I+R LA+    P          + GYVG       R L  +A    ++ R     ++
Sbjct: 254 KTKIARCLAKRLNIPMFYASAASL-QSGYVGGG----PRTLKKLAKMASKQKRAIIFLDE 308

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
           A    + R  + L  +    +T       L   +  D+E+   VA    +          
Sbjct: 309 AESILQSRAGNGL--QNYEKDTINTLLSLLDGVKSKDREVIWLVASNMDEHKMNMDEAML 366

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218
               L ++                ++       
Sbjct: 367 RRFPLKVNFRLPNFDERKEILSRLVTKLDASKL 399


>gi|319944073|ref|ZP_08018352.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Lautropia
           mirabilis ATCC 51599]
 gi|319742650|gb|EFV95058.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Lautropia
           mirabilis ATCC 51599]
          Length = 771

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  +  A+A A++            R E    + L  GPTGVGKT ++R
Sbjct: 456 LERDLKNVVFGQDSSIEALAAAIK-----MARSGLARPEKPIGSFLFSGPTGVGKTEVAR 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +LA   G   ++ +++++ E            GYVG +   ++ + +    +
Sbjct: 511 QLAFTLGIELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPH 562


>gi|293388119|ref|ZP_06632646.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|312909257|ref|ZP_07768114.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
 gi|291082495|gb|EFE19458.1| cell division protein FtsH [Enterococcus faecalis S613]
 gi|311290499|gb|EFQ69055.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           516]
          Length = 725

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 195 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 252

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 253 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 298

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 299 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 346

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 347 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 391

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 392 AQQTPGFAGADLENVLNE 409


>gi|261821258|ref|YP_003259364.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           wasabiae WPP163]
 gi|261605271|gb|ACX87757.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Pectobacterium wasabiae WPP163]
          Length = 757

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A++ +++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 KNLSDRLKMLVFGQDKAIEALSESIK------MSRAGLGQERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|238922947|ref|YP_002936460.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874619|gb|ACR74326.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 609

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +  D  
Sbjct: 188 RIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASRVRDLFEDAK 246

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 247 KNAPCIVFIDEIDAV 261


>gi|229546905|ref|ZP_04435630.1| cell division protein FtsH [Enterococcus faecalis TX1322]
 gi|229307833|gb|EEN73820.1| cell division protein FtsH [Enterococcus faecalis TX1322]
          Length = 726

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 196 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 253

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 254 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 299

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 300 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 347

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 348 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 392

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 393 AQQTPGFAGADLENVLNE 410


>gi|227876310|ref|ZP_03994423.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           mulieris ATCC 35243]
 gi|269976114|ref|ZP_06183113.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
           mulieris 28-1]
 gi|307701521|ref|ZP_07638539.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris FB024-16]
 gi|227843083|gb|EEJ53279.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           mulieris ATCC 35243]
 gi|269935707|gb|EEZ92242.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
           mulieris 28-1]
 gi|307613313|gb|EFN92564.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris FB024-16]
          Length = 915

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 94/239 (39%), Gaps = 34/239 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + IIGQ +A +AV+ ++R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 515 MEDELHKRIIGQNEAVKAVSQSIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 568

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F+E            GYVG +       L +        
Sbjct: 569 KALAEFLFGDENALIQLDMSEFSEKHTASRLFGSPPGYVGYD---EGGQLTEKVRRKPFS 625

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T +     + +L D + +   +   +     + 
Sbjct: 626 VVLFDEVEKAHPDIFNSLLQVLEEGHLTDS-----QGRLVDFKNTIIIMTTNLGTRDINK 680

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM---SVQK--CYPELMRDESDRLIDM 230
                   +     +   +  KV    ++         V +   +P+L ++E  +++D+
Sbjct: 681 GVLTGFQASGELATDYQRMKGKVQEELKQHFRPEFLNRVDEVVVFPQLQKEEILKIVDL 739


>gi|168022328|ref|XP_001763692.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685185|gb|EDQ71582.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 915

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ  A ++VA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 580 LDDELHKRVVGQDPAVKSVAEAI------QRSRAGLSDPNKPIASFMFMGPTGVGKTELA 633

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 634 KALASYLFNTEEAIVRIDMSEYMEKHAVSRLV 665


>gi|154508553|ref|ZP_02044195.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798187|gb|EDN80607.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
          Length = 678

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG     V ++     
Sbjct: 207 RIPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASRVRELFERAK 265

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 266 KNAPAIIFVDEIDAV 280


>gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
 gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
          Length = 584

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG    ++ RDL   A
Sbjct: 167 PKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASRV-RDLFSKA 222


>gi|157137618|ref|XP_001664033.1| paraplegin [Aedes aegypti]
 gi|108869668|gb|EAT33893.1| paraplegin [Aedes aegypti]
          Length = 766

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G Q+AK+ V   +       R++R           +PK  LL+GP G GKT +++ 
Sbjct: 295 KDVAGLQEAKQEVMEFVDYLKAPERYQRLGA-------KVPKGALLLGPPGCGKTLLAKA 347

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    +  I+     D +
Sbjct: 348 VATEAAVPFLSMNGSEFIEMIGGLGAARVRDLFKEARKRSPCIIYIDEIDAI 399


>gi|323491099|ref|ZP_08096289.1| hypothetical protein VIBR0546_19649 [Vibrio brasiliensis LMG 20546]
 gi|323314646|gb|EGA67720.1| hypothetical protein VIBR0546_19649 [Vibrio brasiliensis LMG 20546]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKCVIGQTEAVEVVSNAIR------RSRAGLSDPNQPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         +++++++F E   V R V
Sbjct: 616 KTLAKFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|313904424|ref|ZP_07837801.1| ATP-dependent chaperone ClpB [Eubacterium cellulosolvens 6]
 gi|313470760|gb|EFR66085.1| ATP-dependent chaperone ClpB [Eubacterium cellulosolvens 6]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL R +IGQ +A   VA A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 564 TELHRRVIGQDEAVEKVADAI------IRSKAGIKDPTRPIGSFLFLGPTGVGKTELAKT 617

Query: 73  LARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           LA          ++++++++ E            GYVG +
Sbjct: 618 LAEKLFDDENNMVRIDMSEYMEKYSVSRLIGAPPGYVGYD 657


>gi|308175906|ref|YP_003915312.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
           arilaitensis Re117]
 gi|307743369|emb|CBT74341.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
           arilaitensis Re117]
          Length = 840

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ  A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 514 MEDELHKRVIGQDSAIKAISQAIR------RTRAGLKDPNRPGGSFIFAGPTGVGKTELA 567

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++++E   V R
Sbjct: 568 KALAEFLFGEEEALITLDMSEYSEKHTVSR 597


>gi|301299458|ref|ZP_07205734.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852940|gb|EFK80548.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 830

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 516 LEKILHNRVIGQDEAVKAVSKAIR------RARSGLKDPTRPIGSFMFLGPTGVGKTELA 569

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+++++++ E            GYVG +       L +   N    
Sbjct: 570 KALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYD---EGGQLTEKVRNNPYS 626

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    S  R+V  +       S+        + S  
Sbjct: 627 VVLLDEVEKAHNDVFNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVG 686

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI------D 229
               D+          + E   K        ++  +V   +  L ++E  +++       
Sbjct: 687 FGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVV--FHSLNKEEIHQIVKLMAKNI 744

Query: 230 MDTVHRDSIQMVENYGIVFL 249
           +D +   +I +      + +
Sbjct: 745 IDRIKEQNINLKITPAAIDI 764



 Score = 38.4 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           S  +G+ +        +     +      PE   R    V   SLNK +   I+     N
Sbjct: 684 SVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDETVVFHSLNKEEIHQIVKLMAKN 743

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +I + KE    + I L  T  +ID +A+   +      + GAR ++ V++  +ED+ 
Sbjct: 744 IIDRIKE----QNINLKITPAAIDIVAEAGFDA-----EYGARPIRRVLQDKIEDLL 791


>gi|119961094|ref|YP_949224.1| ClpA/ClpB family protein [Arthrobacter aurescens TC1]
 gi|119947953|gb|ABM06864.1| ClpA/ClpB family protein [Arthrobacter aurescens TC1]
          Length = 885

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 568 MEEELGKRLIGQTKAVQAVSDAV-----RRARAGISDPNRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I++++++++E   V R V
Sbjct: 623 ALADFLFDDERAMIRIDMSEYSEKHSVARLV 653


>gi|15828345|ref|NP_302608.1| heat shock protein [Mycobacterium leprae TN]
 gi|221230822|ref|YP_002504238.1| heat shock protein [Mycobacterium leprae Br4923]
 gi|54035895|sp|Q9CB26|CLPB_MYCLE RecName: Full=Chaperone protein ClpB
 gi|13094038|emb|CAC32007.1| heat shock protein [Mycobacterium leprae]
 gi|219933929|emb|CAR72589.1| heat shock protein [Mycobacterium leprae Br4923]
          Length = 848

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 564 MEDELGKRVVGQKKAVHAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++V+++++ E   V R V
Sbjct: 619 ALADFLFDDQRAMVRVDMSEYGEKHSVARLV 649


>gi|315657837|ref|ZP_07910717.1| chaperone protein ClpB [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491634|gb|EFU81245.1| chaperone protein ClpB [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 918

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ+DA RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 599 MEEYLGQRLIGQKDAVRAVSNAV-----RRARAGVSDPNRPTGSFLFLGPTGVGKTELAK 653

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA           +++++++ E   V R
Sbjct: 654 ALADFLFDDEKALTRIDMSEYGEKHSVAR 682


>gi|307636980|gb|ADN79430.1| cell division protein [Helicobacter pylori 908]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFIHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALDCLKIAKVCVGFSGAMLATLINESALNALKHQRNEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 THGDILEVKDKIA 398


>gi|293191262|ref|ZP_06609169.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
 gi|292820587|gb|EFF79557.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
          Length = 678

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +P+ +LL GP G GKT +++ +A  A APF  +  ++F E+ YVG     V ++     
Sbjct: 207 RIPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASRVRELFERAK 265

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 266 KNAPAIIFVDEIDAV 280


>gi|298345665|ref|YP_003718352.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
 gi|298235726|gb|ADI66858.1| endopeptidase Clp [Mobiluncus curtisii ATCC 43063]
          Length = 918

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ+DA RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 599 MEEYLGQRLIGQKDAVRAVSNAV-----RRARAGVSDPNRPTGSFLFLGPTGVGKTELAK 653

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA           +++++++ E   V R
Sbjct: 654 ALADFLFDDEKALTRIDMSEYGEKHSVAR 682


>gi|303287446|ref|XP_003063012.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455648|gb|EEH52951.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 284

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G   AK  +   ++    R           +P   LLVGP G GKT +++ +A  AG
Sbjct: 109 DVAGVDAAKTELIELVQML--RSAEKYKGVKNRLPTGCLLVGPPGTGKTLLAKAVAGEAG 166

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  V  ++F E+ +VGR   ++ R+L   A
Sbjct: 167 VPFFSVAASEFVEL-FVGRGAARV-RELFAEA 196


>gi|254509456|ref|ZP_05121533.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
 gi|219547618|gb|EED24666.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
          Length = 655

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 359 QMEEVLHKRVIGQTEAVEVVSDAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTEL 412

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 413 CKTLAHFMFDSEDAMVRIDMSEFMEKHSVARLV 445


>gi|167839738|ref|ZP_02466422.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 660

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|145236695|ref|XP_001390995.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134075456|emb|CAK48017.1| unnamed protein product [Aspergillus niger]
          Length = 783

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 497 DDIAGLDGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 554

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 555 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 585


>gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia]
          Length = 673

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 27/184 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G  + K  +      L+N  +     A L     PK ILLVGP G GKT ++R LA
Sbjct: 243 NDVLGIDEFKEELEEIVEFLKNPKKYTDSGAKL-----PKGILLVGPPGTGKTLLARALA 297

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--REQASIN 129
             AG  F     ++F E+ +VG     V +I +     A +I+     D +  R +A   
Sbjct: 298 GEAGCAFFYKSGSEFDEM-FVGVGASRVREIFKTARQKAPSIIFIDEIDSIGGRRRAQDP 356

Query: 130 AEER-----ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              R     IL  + G   +         N  +V    L+     DK I + + D     
Sbjct: 357 GYSRDTINQILTEMDGFKQSESVIVIGATNFEQVLDPALKRPGRFDKMIHVPLPDVKGRE 416

Query: 177 SNFD 180
             F 
Sbjct: 417 QIFS 420


>gi|93141242|sp|P53533|CLPB1_SYNE7 RecName: Full=Chaperone protein ClpB 1
          Length = 874

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LDEELHQRVIGQEEAVSAVADAI------QRSRAGLSDPKRPIASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 622 KALAAYLFDTEDAMIRIDMSEYMEKHAVSR 651


>gi|50121580|ref|YP_050747.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612106|emb|CAG75556.1| ATP-dependent CLP protease ATP-binding subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 757

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A++ +++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 KNLSDRLKMLVFGQDKAIEALSESIK------MSRAGLGQERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 557


>gi|323452125|gb|EGB08000.1| hypothetical protein AURANDRAFT_26972 [Aureococcus anophagefferens]
          Length = 159

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVDV 109
           P+ ++L GP G GKT ++R +A  AG PFI    ++F E+ +VG        +  D    
Sbjct: 54  PRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRIRSMFGDAKKN 112

Query: 110 AINIVRESRRDEV-REQA 126
           A  I+     D + R++A
Sbjct: 113 APCIIFIDEIDAIGRQRA 130


>gi|296449468|ref|ZP_06891248.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296878209|ref|ZP_06902221.1| cell division protein FtsH [Clostridium difficile NAP07]
 gi|296261707|gb|EFH08522.1| cell division protein FtsH [Clostridium difficile NAP08]
 gi|296430778|gb|EFH16613.1| cell division protein FtsH [Clostridium difficile NAP07]
          Length = 467

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 36/242 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K  +      +++  + Q++ A +     PK +L  GP G GKT ++  +A
Sbjct: 42  RDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKI-----PKGVLFYGPPGTGKTLLASAVA 96

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
               + F  V  ++F E  YVG     V  +       A +I+     D V  +  + + 
Sbjct: 97  GETNSSFFNVTGSEFVEK-YVGVGAKRVRTLFEKARKEAPSIIFIDEIDAVGAKRHLESN 155

Query: 132 ER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI--------- 167
                    +L  + G    S        N  ++  + L      D+ I I         
Sbjct: 156 NEKDQTLNQLLVEMDGFNKDSNVLIIGATNRLDLLDEALLRPGRFDRHIHIGAPNYHTRF 215

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+    +D    D      +            + +   +    +V+     +  +  D+ 
Sbjct: 216 EILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANEAAIFAVRDDSECITSEHFDKA 275

Query: 228 ID 229
           ++
Sbjct: 276 LE 277


>gi|257458758|ref|ZP_05623881.1| chaperone protein ClpB [Campylobacter gracilis RM3268]
 gi|257443746|gb|EEV18866.1| chaperone protein ClpB [Campylobacter gracilis RM3268]
          Length = 869

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   L   ++GQ +A  A+A A+    +R      + +     + L +GPTGVGKT  ++
Sbjct: 565 IEEHLKESVVGQDEALHAIARAV----KR-NKAGLVNENRPIGSFLFLGPTGVGKTESAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LAR         I+ +++++ E            GYVG +       L +         
Sbjct: 620 SLARFLFDDERAMIRFDMSEYMEKHSVSRLLGAPPGYVGYD---EGGQLTEAVRRKPYSV 676

Query: 118 RRDEVREQASINAEERILDALVGKTATSNT 147
              +  E+A  +    +L  L    AT N 
Sbjct: 677 LLFDEIEKAHKDVFNILLGILDDGRATDNK 706



 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   +LN+ D   I+      +    ++ +   GI    +E++   +A  
Sbjct: 761 PEFINRLDDIVIFNALNEDDLIKIV----GIMFKSLQKTLANRGINASLSENAKKLIASA 816

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     + GAR L+  +  ++ED
Sbjct: 817 GFDI-----EYGARPLRRALYDLVED 837


>gi|302535160|ref|ZP_07287502.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
 gi|302444055|gb|EFL15871.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
          Length = 841

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 508 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 562 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 591


>gi|251772314|gb|EES52883.1| ATP-dependent chaperone protein ClpB [Leptospirillum
           ferrodiazotrophum]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ++A  AV+ A+R      +  A ++D   P  +   +GPTGVGKT +
Sbjct: 565 KMEERLSKRVVGQKEAVAAVSNAIR------RARAGIQDPNRPLGSFFFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I+++++++ E   V R
Sbjct: 619 AKSLAEFLFDDDQAMIRIDMSEYMEKHSVAR 649


>gi|330962677|gb|EGH62937.1| clpB protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 854

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L + +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|329117468|ref|ZP_08246185.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           parauberis NCFD 2020]
 gi|326907873|gb|EGE54787.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           parauberis NCFD 2020]
          Length = 702

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A +AVA A+     R+             + L VGPTGVGKT +
Sbjct: 407 KEIGNRLRGHVIGQDQAVQAVAKAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 461

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GYVG +
Sbjct: 462 AKQLALDMFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYD 504


>gi|304390646|ref|ZP_07372599.1| chaperone protein ClpB [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326402|gb|EFL93647.1| chaperone protein ClpB [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 918

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ+DA RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 599 MEEYLGQRLIGQKDAVRAVSNAV-----RRARAGVSDPNRPTGSFLFLGPTGVGKTELAK 653

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA           +++++++ E   V R
Sbjct: 654 ALADFLFDDEKALTRIDMSEYGEKHSVAR 682


>gi|290579539|ref|YP_003483931.1| putative cell division protein [Streptococcus mutans NN2025]
 gi|254996438|dbj|BAH87039.1| putative cell division protein [Streptococcus mutans NN2025]
          Length = 656

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 187 DVAGAEEEKQEL-IEVVDFLKDPKRYKALGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 244

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 245 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 280


>gi|241889427|ref|ZP_04776728.1| negative regulator of genetic competence ClpC/MecB [Gemella
           haemolysans ATCC 10379]
 gi|241863970|gb|EER68351.1| negative regulator of genetic competence ClpC/MecB [Gemella
           haemolysans ATCC 10379]
          Length = 824

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 94/237 (39%), Gaps = 34/237 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A  ++A A+     R+             + + +GPTGVGKT ++
Sbjct: 517 KLEEILHKRVIGQDEAVVSLAKAV-----RRARSGFKAPNRPIGSFIFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVG-RNVEQIIRDLVDVAINIVR 115
           + L+          I+++++++ E            GYVG   V Q+   +     ++V 
Sbjct: 572 KSLSEALFSSEDNMIRIDMSEYMEPHSISRLVGAPPGYVGYEEVGQLSEQVRQKPYSVVL 631

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T  +      ++ D + +   +   V  +  +
Sbjct: 632 FDEIE----KAHPSIFNILLQVLDDGRLTDAS-----GRVIDFKNTIIIMTSNVGVSELN 682

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-----YPELMRDESDRL 227
              F   GG+     +   + + +M + +K+     + +      +  L ++E +++
Sbjct: 683 DQKFVGFGGSDSIKNDYKNVQNTMMEALKKQYRPEFLNRIDDIIVFKTLEKEELEKI 739


>gi|215408583|emb|CAR31141.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF     ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRV-RTLFKEA 116


>gi|159462584|ref|XP_001689522.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283510|gb|EDP09260.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 326

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 18/231 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AKR V   +       QL    R    P+ +LL GP G GKT I + +A   
Sbjct: 30  DDIAGQDAAKRLVQEMVVWPMLNPQLFTGARAP--PRGLLLFGPPGTGKTLIGKAVAANI 87

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR--------ESRRDEVREQASIN 129
            A F  +  +  T   ++G   E+++R L  +A  +          +S     + +    
Sbjct: 88  CATFFSISASSLT-SKWIGEG-ERMVRALFALAGLLSPSVIFIDEIDSLISARKSEGEHE 145

Query: 130 AEERI-LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188
           A  R+    L+       +++  R  L       +E+D              +P  A+  
Sbjct: 146 ASRRLKTQMLIELEGCDPSKDAERILLIGATNRPEELDEAARRRMPKQLYIPLPCEAAR- 204

Query: 189 ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
                ++ S+   +G      ++       + R       DM  + +++ Q
Sbjct: 205 ----RQMLSRAFRAGSDISHCLTPVDLDKVVERTAGYSGSDMKNLIQEACQ 251


>gi|327274995|ref|XP_003222259.1| PREDICTED: fidgetin-like protein 1-like [Anolis carolinensis]
          Length = 688

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 415 DDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 472

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 473 GATFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 507


>gi|325997167|gb|ADZ49375.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017]
          Length = 550

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFIHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALDCLKIAKVCVGFSGAMLATLINESALNALKHQRNEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 THGDILEVKDKIA 398


>gi|323451269|gb|EGB07147.1| hypothetical protein AURANDRAFT_12251 [Aureococcus anophagefferens]
          Length = 313

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G QDAKR++   +    +R +L   LR    PK +LL GP G GKT I R +A  +
Sbjct: 30  DDVAGLQDAKRSIMEMVIWPMQRPELFTGLRAV--PKGMLLFGPPGTGKTLIGRAIASSS 87

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +      ++G + E+++R +  VA +  
Sbjct: 88  GATFFSISASSLM-SKWIGES-EKLVRTMFAVAGHKE 122


>gi|309808773|ref|ZP_07702659.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           01V1-a]
 gi|308168009|gb|EFO70141.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV
           01V1-a]
          Length = 575

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  AG PF  +  ++F
Sbjct: 100 IVEFLKNPAKFTKLGARI-----PAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEF 154

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 155 VEM-FVGVGASRV-RDLFDNA 173


>gi|317131986|ref|YP_004091300.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469965|gb|ADU26569.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 754

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + IIGQ +A  AV++A+R    R Q+    R    P + + VGPTGVGKT + +
Sbjct: 457 LQETLKKKIIGQDEAVEAVSLAIR--RSRVQISPRRR----PASFIFVGPTGVGKTELVK 510

Query: 72  RL-ARLAGAP--FIKVEVTKFTEIGYVGR 97
            L A L   P   I++++++F E   V R
Sbjct: 511 VLSAELFDQPDSLIRLDMSEFMEKHSVSR 539


>gi|259481767|tpe|CBF75598.1| TPA: AAA family ATPase, putative (AFU_orthologue; AFUA_6G12560)
           [Aspergillus nidulans FGSC A4]
          Length = 803

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 518 DDIAGLEGAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 575

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 576 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 606


>gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
          Length = 818

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +        +      +   EL   +P+ +LL GP G GKT ++R +A 
Sbjct: 168 DVAGADEAVDELQEI-----KDFLDDPERYHELGAKIPRGVLLYGPPGTGKTLLARAVAG 222

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 223 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|190348482|gb|EDK40940.2| hypothetical protein PGUG_05038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 802

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + ++GQ +A  AVA A+     R Q      D+    + + +GPTG GKT +++ LA 
Sbjct: 501 LKQKVVGQDEAIHAVADAV-----RLQRAGLTSDKRPIASFIFLGPTGTGKTELTKSLAE 555

Query: 76  LA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
                 +  ++ ++++F E   V R +  
Sbjct: 556 FLFNDKSSVVRFDMSEFQEKHTVSRLIGS 584


>gi|167565768|ref|ZP_02358684.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis EO147]
          Length = 663

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|146414225|ref|XP_001483083.1| hypothetical protein PGUG_05038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 802

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + ++GQ +A  AVA A+     R Q      D+    + + +GPTG GKT +++ LA 
Sbjct: 501 LKQKVVGQDEAIHAVADAV-----RLQRAGLTSDKRPIASFIFLGPTGTGKTELTKSLAE 555

Query: 76  LA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
                 +  ++ ++++F E   V R +  
Sbjct: 556 FLFNDKSSVVRFDMSEFQEKHTVSRLIGS 584


>gi|330991477|ref|ZP_08315428.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
 gi|329761496|gb|EGG77989.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
          Length = 867

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT + 
Sbjct: 566 MEDELRKSVVGQEPALKAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LAR         +++++++F E   V R V
Sbjct: 620 KALARFLFDDEKALLRIDMSEFMEKHAVSRLV 651


>gi|315635885|ref|ZP_07891147.1| cell division protein FtsH [Arcobacter butzleri JV22]
 gi|315479864|gb|EFU70535.1| cell division protein FtsH [Arcobacter butzleri JV22]
          Length = 662

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 30/273 (10%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G ++AK  V   +      +R+ R           +PK +LLVGP G GKT +++ 
Sbjct: 194 DDMAGNKEAKEEVQEVVDFLKSPDRYVRLGAQ-------IPKGVLLVGPPGTGKTLLAKA 246

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAE 131
           +A  A   F+ V  + F E+ +VG    ++ RDL + A  +       DE+       A 
Sbjct: 247 VAGEANVEFLSVSGSAFIEM-FVGVGASRV-RDLFEQAKKVAPAIIFIDEIDAIGKSRA- 303

Query: 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN 191
                +           +   + L + +    E    +   +++      P     G  +
Sbjct: 304 -----SGGPMGGNDEREQTLNQLLAEMDGFSTEHAPVIVLAATNRPEVLDPALLRPGRFD 358

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251
              L  K    GR + + + ++         +  + +D+  V + +  +        ++E
Sbjct: 359 RQVLVDKPDYEGRIEILNVHIKD-------VKLGKNVDLKEVAKMTAGLAGADLANIVNE 411

Query: 252 FDKIVARDSGNGIGVS--REGVQRDLLPLVEGS 282
              +  R S N +G    +E V+R +  L + S
Sbjct: 412 AALLAGRASKNEVGPEDFKEAVERQIAGLEKKS 444


>gi|313673405|ref|YP_004051516.1| membrane protease ftsh catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940161|gb|ADR19353.1| membrane protease FtsH catalytic subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 603

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV-- 109
           +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D   
Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQGK 243

Query: 110 --AINIVRESRRDEV 122
             A  I+     D V
Sbjct: 244 KNAPCIIFIDEIDAV 258


>gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002]
 gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19]
          Length = 667

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++A   +      L +  R +QL A +     P+ +LL GP G GKT ++R +A 
Sbjct: 164 DVAGAEEAVDELHEIKDFLEDPSRYEQLGAKI-----PRGVLLYGPPGTGKTLLARAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  + R   + +  I+     D V
Sbjct: 219 EAGVPFYSISGSDFVEM-FVGVGASRVRDLFRQARENSPCIIFIDEIDAV 267


>gi|256826525|ref|YP_003150484.1| ATP-dependent chaperone ClpB [Cryptobacterium curtum DSM 15641]
 gi|256582668|gb|ACU93802.1| ATP-dependent chaperone ClpB [Cryptobacterium curtum DSM 15641]
          Length = 871

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ +A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 563 DLEDRLHERVVGQDEAVSAVAGAI-----RRNRAGLSDPDRPIGSFLFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          ++++++++ E            GYVG +
Sbjct: 618 KALAEYLFDTERAMVRIDMSEYMEKFSVQRLIGAPPGYVGYD 659


>gi|195392383|ref|XP_002054837.1| GJ24660 [Drosophila virilis]
 gi|229559931|sp|B4M0H8|SPAST_DROVI RecName: Full=Spastin
 gi|194152923|gb|EDW68357.1| GJ24660 [Drosophila virilis]
          Length = 769

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 495 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 552

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 553 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 586


>gi|194289894|ref|YP_002005801.1| chaperone [Cupriavidus taiwanensis LMG 19424]
 gi|193223729|emb|CAQ69736.1| Chaperone [Cupriavidus taiwanensis LMG 19424]
          Length = 862

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEERLHARVVGQDEAVRLVSDAIR------RSRAGLADENKPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAEFMFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|121700090|ref|XP_001268310.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119396452|gb|EAW06884.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 805

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 518 DDIAGLDPAKKALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 575

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 576 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 606


>gi|126698263|ref|YP_001087160.1| putative ATP-dependent peptidase [Clostridium difficile 630]
 gi|260682381|ref|YP_003213666.1| putative ATP-dependent peptidase [Clostridium difficile CD196]
 gi|260685980|ref|YP_003217113.1| putative ATP-dependent peptidase [Clostridium difficile R20291]
 gi|115249700|emb|CAJ67517.1| putative ATP-dependent peptidase, M41 family [Clostridium
           difficile]
 gi|260208544|emb|CBA61204.1| putative ATP-dependent peptidase [Clostridium difficile CD196]
 gi|260211996|emb|CBE02529.1| putative ATP-dependent peptidase [Clostridium difficile R20291]
          Length = 467

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 36/242 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           R + G  + K  +      +++  + Q++ A +     PK +L  GP G GKT ++  +A
Sbjct: 42  RDVAGLDEVKEELFEIVDFMKSPQKYQKMGAKI-----PKGVLFYGPPGTGKTLLASAVA 96

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE 131
               + F  V  ++F E  YVG     V  +       A +I+     D V  +  + + 
Sbjct: 97  GETNSSFFNVTGSEFVEK-YVGVGAKRVRTLFEKARKEAPSIIFIDEIDAVGAKRHLESN 155

Query: 132 ER-------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDI--------- 167
                    +L  + G    S        N  ++  + L      D+ I I         
Sbjct: 156 NEKDQTLNQLLVEMDGFNKDSNVLIIGATNRLDLLDEALLRPGRFDRHIHIGAPNYHTRF 215

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           E+    +D    D      +            + +   +    +V+     +  +  D+ 
Sbjct: 216 EILKVHTDDKPIDKSVNLELLAKKTHGFNGAHLSNIANEAAIFAVRDDSECITSEHFDKA 275

Query: 228 ID 229
           ++
Sbjct: 276 LE 277


>gi|15829250|ref|NP_326610.1| cell division protein FTSH [Mycoplasma pulmonis UAB CTIP]
 gi|38372250|sp|Q98PE4|FTSH_MYCPU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|14090194|emb|CAC13952.1| CELL DIVISION PROTEIN FTSH [Mycoplasma pulmonis]
          Length = 725

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 44/258 (17%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           + +   L+N  +     A       PK ILL GP G GKT +++  A  A  PF  +  +
Sbjct: 225 QELVDYLKNPKKYAAAGA-----RFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISAS 279

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNT 147
            F E+ YVG   +++                  E R+ A        +D L     +  +
Sbjct: 280 SFVEL-YVGLGAKRV-------------REMFKEARKLAPAII---FIDELDAVGRSRGS 322

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
                   R+  ++   ++++  + ++ I           G  N +++    +    +  
Sbjct: 323 GIGGGNDEREQTLNQILVEMDGINENAGILIM--------GATNRTDVLDPALLRPGRFD 374

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGV 266
             ++V        R+E  +L              +   +    +FDKI  R  G +G  +
Sbjct: 375 RIITV-GLPDIKEREEILKL------------HSKGKRLSKEIKFDKIAKRTPGYSGAQL 421

Query: 267 SREGVQRDLLPLVEGSSV 284
                +  LL + E + V
Sbjct: 422 ENVINEASLLSVREKTDV 439


>gi|297159074|gb|ADI08786.1| putative ATP-dependent protease subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 863

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MEDELGRRLIGQLEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 623 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 653


>gi|295098773|emb|CBK87862.1| membrane protease FtsH catalytic subunit [Eubacterium cylindroides
           T2-87]
          Length = 655

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + ++   
Sbjct: 194 IPKGVLMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGTGASRVRDMFKNAQK 252

Query: 109 VAINIVRESRRDEV 122
            A  IV     D V
Sbjct: 253 SAPCIVFIDEIDAV 266


>gi|261250366|ref|ZP_05942942.1| ClpB protein [Vibrio orientalis CIP 102891]
 gi|260939482|gb|EEX95468.1| ClpB protein [Vibrio orientalis CIP 102891]
          Length = 857

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQTEAVEVVANAIR------RSRAGLSDPNQPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|259047952|ref|ZP_05738353.1| cell division protein FtsH [Granulicatella adiacens ATCC 49175]
 gi|259035372|gb|EEW36627.1| cell division protein FtsH [Granulicatella adiacens ATCC 49175]
          Length = 685

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     P  +LL GP G GKT +++ +A 
Sbjct: 179 DVAGAEEEKQELVEVVEFLKDPRKFTALGARI-----PAGVLLEGPPGTGKTLLAKAVAG 233

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 234 EANVPFFSISGSEFVEM-FVGVGASRV-RDLFENAKKN 269


>gi|302557367|ref|ZP_07309709.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           griseoflavus Tu4000]
 gi|302474985|gb|EFL38078.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           griseoflavus Tu4000]
          Length = 834

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+       +  A L     P  + L +GPTGVGKT ++
Sbjct: 530 LEQHLHQRVVGQDEAVRVVSDAV------MRSRAGLSSPDRPIGSFLFLGPTGVGKTELA 583

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          ++++++++ E   V R V
Sbjct: 584 RALAEALFGSEERMVRLDMSEYQERHTVSRLV 615



 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V  + L   + R I       L+   +  +K +G+ +DFT+ ++D LA+ 
Sbjct: 728 PEFLNRIDEIVVFRQLTADELRRIT----DLLLESTRRGLKGQGVGVDFTDAAVDWLAER 783

Query: 374 AVNLNSTVGDIGARRLQTVMER----VLEDISFSASDLQEKTVVIDAE 417
                    + GAR L+  ++R     L  +       +   V +DA 
Sbjct: 784 GHQ-----PEYGARPLRRTIQREVDNQLSRLLLDGRVREGGRVTVDAA 826


>gi|269836474|ref|YP_003318702.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
 gi|269785737|gb|ACZ37880.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
          Length = 870

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + ++GQ +A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 566 MESRLHQRVVGQDEAIEAVSNAIR------RARSGLQDPNRPLGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           R LA          ++++++++ E            GYVG +
Sbjct: 620 RALAEFLFDDERAMVRIDMSEYQERHTVARLIGAPPGYVGYD 661


>gi|160902338|ref|YP_001567919.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
 gi|310943104|sp|A9BJK3|FTSH3_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|160359982|gb|ABX31596.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95]
          Length = 645

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRLAR 75
             + G ++AK  +   +    +  + P   +     MPK +LLVG  G GKT ++R +A 
Sbjct: 162 NDVAGVKEAKEELTDVV----KFLKDPKVFNRLGARMPKGVLLVGEPGTGKTLLARAVAG 217

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 EAGVPFFYISGSDFVEL-FVGVGAARV-RDLFNQA 250


>gi|313201917|ref|YP_004040575.1| ATP-dependent clp protease, ATP-binding subunit clpa [Methylovorus
           sp. MP688]
 gi|312441233|gb|ADQ85339.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylovorus
           sp. MP688]
          Length = 761

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A++ A++                   + L  GPTGVGKT +
Sbjct: 449 KTLERDLKATVFGQDKAIEALSAAIK-----MARSGLGSTNKPIGSFLFSGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   I+ +++++ E            GYVG     ++ + ++     
Sbjct: 504 ARQLAYTLGIELIRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLMTEAINKHPYC 558


>gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010]
 gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 697

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 33/252 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+  A      +   L++  + + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 217 DVAGEDSAVQEVEEIKDFLKDPSKYKALGARI-----PRGVLLYGPPGTGKTLLARAIAG 271

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ------ 125
            AG PF  +  + F E+ +VG    ++ RDL D     A  I+     D V  +      
Sbjct: 272 EAGVPFYAMAGSDFVEM-FVGLGASRV-RDLFDEAKKNAPAIIFIDEIDAVGRKRGSGMS 329

Query: 126 -ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 E+ +   LV              A +N  +V    L      D+++ +E  D  
Sbjct: 330 GGHDEREQTLNQLLVEMDGFDSDTNLIIIAATNRPDVLDPALLRPGRFDRQVSVEAPDLE 389

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
              +   +       + ++      V   G       +V      L      +LID +  
Sbjct: 390 GREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVLNEAALLCARAGAQLID-NRA 448

Query: 234 HRDSIQMVENYG 245
             ++I  V+   
Sbjct: 449 IDEAIDRVQAGP 460


>gi|293382699|ref|ZP_06628624.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|312908595|ref|ZP_07767537.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
 gi|291079859|gb|EFE17223.1| cell division protein FtsH [Enterococcus faecalis R712]
 gi|310625382|gb|EFQ08665.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO
           512]
          Length = 726

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  A+L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 196 DVAGAEEEKQEL-VEVVEFLKDPRRFAELGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 253

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDAL 138
            PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +DA+
Sbjct: 254 VPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--IDAV 299

Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSELFS 197
                        R++         E +  +     ++  FD   G   +   N S++  
Sbjct: 300 G------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLD 347

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD-KIV 256
             +    +   ++ V +                D   R++I  V        D+ D K+V
Sbjct: 348 PALLRPGRFDRQILVGR---------------PDVKGREAILRVHAKNKPLADDVDLKVV 392

Query: 257 ARDSGNGIGVSREGVQRD 274
           A+ +    G   E V  +
Sbjct: 393 AQQTPGFAGADLENVLNE 410


>gi|237743037|ref|ZP_04573518.1| cell division protein ftsH [Fusobacterium sp. 7_1]
 gi|229433597|gb|EEO43809.1| cell division protein ftsH [Fusobacterium sp. 7_1]
          Length = 723

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 283 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGQPGTGKTLLAKAVAG 337

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 338 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 389


>gi|300768964|ref|ZP_07078855.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493485|gb|EFK28662.1| cell division protein FtsH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 750

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 223 RIPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEQA 280

Query: 111 INI 113
              
Sbjct: 281 KKN 283


>gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 697

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 33/252 (13%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+  A      +   L++  + + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 217 DVAGEDSAVQEVEEIKDFLKDPSKYKALGARI-----PRGVLLYGPPGTGKTLLARAIAG 271

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ------ 125
            AG PF  +  + F E+ +VG    ++ RDL D     A  I+     D V  +      
Sbjct: 272 EAGVPFYAMAGSDFVEM-FVGLGASRV-RDLFDEAKKNAPAIIFIDEIDAVGRKRGSGMS 329

Query: 126 -ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                 E+ +   LV              A +N  +V    L      D+++ +E  D  
Sbjct: 330 GGHDEREQTLNQLLVEMDGFDSDTNLIIIAATNRPDVLDPALLRPGRFDRQVSVEAPDLE 389

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
              +   +       + ++      V   G       +V      L      +LID +  
Sbjct: 390 GREAILKVHAKGKPFVPDVDLHMVAVRTPGFTGADLANVLNEAALLCARAGAQLID-NRA 448

Query: 234 HRDSIQMVENYG 245
             ++I  V+   
Sbjct: 449 IDEAIDRVQAGP 460


>gi|213424878|ref|ZP_03357628.1| protein disaggregation chaperone [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 798

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 503 MEQELHSRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 557 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 588


>gi|197103195|ref|YP_002128573.1| ATPase with chaperone activity, ATP-binding subunit
           [Phenylobacterium zucineum HLK1]
 gi|196480471|gb|ACG79998.1| ATPase with chaperone activity, ATP-binding subunit
           [Phenylobacterium zucineum HLK1]
          Length = 868

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R +IGQ  A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEEALGRRVIGQAHAISAVSRAVR------RARAGLKDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAGFLFDDDTAMVRIDMSEFMEKHSVAR 646


>gi|182437219|ref|YP_001824938.1| putative ATP-dependent protease subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326777851|ref|ZP_08237116.1| ATP-dependent chaperone ClpB [Streptomyces cf. griseus XylebKG-1]
 gi|178465735|dbj|BAG20255.1| putative ATP-dependent protease subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326658184|gb|EGE43030.1| ATP-dependent chaperone ClpB [Streptomyces cf. griseus XylebKG-1]
          Length = 861

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL + +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MESELGKRLIGQSEAVQAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 651


>gi|171913581|ref|ZP_02929051.1| ATP-dependent chaperone protein ClpB [Verrucomicrobium spinosum DSM
           4136]
          Length = 858

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+DE  P  + L +GPTGVGKT +S
Sbjct: 565 MEDRLANRVIGQKNAIKAVSNAVR------RARAGLQDENRPIGSFLFLGPTGVGKTELS 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA           +++++++ E   V R
Sbjct: 619 KALAEFLFDDENAMTRIDMSEYMEKHSVAR 648



 Score = 37.2 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL---MKTEGIILDFTEDSIDAL 370
           PE   R    +    L+  D   I+        +Q + +   +  + I L  T++++  +
Sbjct: 751 PEFLNRIDEVIIFDRLDARDLSAIVK-------VQLQRVVSRLAKQNIGLVLTDEAVRKI 803

Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424
           AD   +        GAR L+  ++R++ D    + D+ +   V D E +   + 
Sbjct: 804 ADEGYD-----PVFGARPLKRAIQRLVLDPL--SLDMLDGKFV-DGEVIEARLE 849


>gi|111378714|gb|ABH09265.1| cell division protein [Paulinella chromatophora]
          Length = 621

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   L A +     PK ILL G  G GKT +++ +A 
Sbjct: 166 DVAGVEGAKIELEEVVDFLKNPDRFTSLGAKI-----PKGILLAGSPGTGKTLLAKAVAG 220

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 EARVPFFSIAGSEFVEM-FVGVGASRV-RDLFEQA 253


>gi|187923803|ref|YP_001895445.1| ATP-dependent chaperone ClpB [Burkholderia phytofirmans PsJN]
 gi|187714997|gb|ACD16221.1| ATP-dependent chaperone ClpB [Burkholderia phytofirmans PsJN]
          Length = 865

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHARVVGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALASFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|317474140|ref|ZP_07933417.1| ATP-dependent chaperone ClpB [Bacteroides eggerthii 1_2_48FAA]
 gi|316909711|gb|EFV31388.1| ATP-dependent chaperone ClpB [Bacteroides eggerthii 1_2_48FAA]
          Length = 864

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|295112200|emb|CBL28950.1| ATP-dependent chaperone ClpB [Synergistetes bacterium SGP1]
          Length = 870

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A + VA A+       +  + +RD   P  + + +GPTGVGKT +
Sbjct: 569 KLDEVLHRRVVGQDEAVQLVADAV------LRARSGIRDPRRPIGSFIFLGPTGVGKTEL 622

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          I+++++++ E   V R V
Sbjct: 623 AKTLAEALFDSEENIIRIDMSEYMEKHSVSRLV 655


>gi|291533041|emb|CBL06154.1| ATP-dependent chaperone ClpB [Megamonas hypermegale ART12/1]
          Length = 849

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 550 LEDVLHERVVGQDEAVKAVSEAI------IRARAGIKDPNRPIGSFIFLGPTGVGKTELA 603

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 604 KTLAESLFDDERSIIRIDMSEYMEKHSVAR 633


>gi|240850300|ref|YP_002971693.1| endopeptidase Clp ATP-binding chain A [Bartonella grahamii as4aup]
 gi|240267423|gb|ACS51011.1| endopeptidase Clp ATP-binding chain A [Bartonella grahamii as4aup]
          Length = 783

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   + GQ  A   +  +++         A LR+   P  + L  GPTGVGKT +
Sbjct: 456 KLERELKHVVYGQDQAISVLVSSIK------LARAGLREPDKPIGSYLFSGPTGVGKTEV 509

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +++LA   G   ++ +++++ E            GY+G +   ++ D VD   +
Sbjct: 510 AKQLASSLGIELLRFDMSEYMERHTVARLIGAPPGYIGFDQGGLLTDAVDQKPH 563


>gi|218130541|ref|ZP_03459345.1| hypothetical protein BACEGG_02130 [Bacteroides eggerthii DSM 20697]
 gi|217986885|gb|EEC53216.1| hypothetical protein BACEGG_02130 [Bacteroides eggerthii DSM 20697]
          Length = 864

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|11561806|gb|AAC83688.2| 101 kDa heat shock protein [Nicotiana tabacum]
          Length = 909

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 21/100 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
             L + ++GQ  A RAVA A+       +  A L     P    L +GPTGVGKT +++ 
Sbjct: 565 DRLHQRVVGQDHAVRAVAEAV------LRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKA 618

Query: 73  LARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           LA          I+++++++ E            GYVG +
Sbjct: 619 LAEQLFDDDKLMIRIDMSEYMEQHSVSRLIGAPPGYVGHD 658


>gi|332978323|gb|EGK15049.1| chaperone protein ClpB [Psychrobacter sp. 1501(2011)]
          Length = 862

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A ++VA A+R      +  A L D   P    L +GPTGVGKT ++
Sbjct: 566 MEERLHERVVGQDEAVQSVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KSLANFLFDSEDAMVRIDMSEFMEKHSVSRLV 651


>gi|332970373|gb|EGK09365.1| ATP-dependent metalloprotease FtsH [Kingella kingae ATCC 23330]
          Length = 645

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      +R++            +P+ ILL G  G GKT +++ +
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPDRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 213

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 214 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|320159863|ref|YP_004173087.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Anaerolinea thermophila UNI-1]
 gi|319993716|dbj|BAJ62487.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Anaerolinea thermophila UNI-1]
          Length = 839

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL ++I+GQ +A  A+A A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 514 MEEELRKHIVGQDEAIDAIAKAVR------RARAGLKDPRRPIGSFIFLGPTGVGKTELT 567

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LAR         I++++++F E   V R V
Sbjct: 568 KALARFMFGSEEALIQLDMSEFMERHTVSRLV 599


>gi|315291076|gb|EFU50439.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 153-1]
          Length = 758

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++ +L++  G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHA 559

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 560 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 590


>gi|313884430|ref|ZP_07818191.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620214|gb|EFR31642.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 688

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 189 DVAGAEEEKQEL-VEVVEFLKDPKRFTALGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 246

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 247 VPFFSMSGSEFVEM-FVGVGASRV-RDLFENA 276


>gi|306817201|ref|ZP_07450948.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris ATCC 35239]
 gi|304650003|gb|EFM47281.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           mulieris ATCC 35239]
          Length = 915

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 94/239 (39%), Gaps = 34/239 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + IIGQ +A +AV+ ++R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 515 MEDELHKRIIGQNEAVKAVSQSIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 568

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F+E            GYVG +       L +        
Sbjct: 569 KALAEFLFGDENALIQLDMSEFSEKHTASRLFGSPPGYVGYD---EGGQLTEKVRRKPFS 625

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
               +  E+A  +    +L  L     T +     + +L D + +   +   +     + 
Sbjct: 626 VVLFDEVEKAHPDIFNSLLQVLEEGHLTDS-----QGRLVDFKNTIIIMTTNLGTRDINK 680

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM---SVQK--CYPELMRDESDRLIDM 230
                   +     +   +  KV    ++         V +   +P+L ++E  +++D+
Sbjct: 681 GVLTGFQASGELATDYQRMKGKVQEELKQHFRPEFLNRVDEVVVFPQLQKEEILKIVDL 739


>gi|302829621|ref|XP_002946377.1| hypothetical protein VOLCADRAFT_79066 [Volvox carteri f.
           nagariensis]
 gi|300268123|gb|EFJ52304.1| hypothetical protein VOLCADRAFT_79066 [Volvox carteri f.
           nagariensis]
          Length = 863

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
            EL + +IGQ  A  AVA A+      Q+  A L D   P  + + +GPTGVGKT +++ 
Sbjct: 537 EELHKRVIGQDGAVEAVADAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTELAKA 590

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA+         ++++++++ E   V R
Sbjct: 591 LAQFLFNTEDAMVRIDMSEYMEKHSVSR 618


>gi|225570736|ref|ZP_03779759.1| hypothetical protein CLOHYLEM_06839 [Clostridium hylemonae DSM
           15053]
 gi|225160198|gb|EEG72817.1| hypothetical protein CLOHYLEM_06839 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ++A RAV+ A+    +R ++   L+D   P  + L +GPTGVGKT +
Sbjct: 502 KLEQTLHKRVIGQEEAVRAVSKAI----KRGRVG--LKDPKRPIGSFLFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           S+ L+          I+V+++++ E            GYVG +
Sbjct: 556 SKALSEALFGNEESMIRVDMSEYMEKHSVAKMIGSPPGYVGHD 598


>gi|159035793|ref|YP_001535046.1| ATPase [Salinispora arenicola CNS-205]
 gi|157914628|gb|ABV96055.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
          Length = 863

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L   ++GQ+ A  AVA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 567 METSLSEQVVGQERAVGAVADAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 621

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 622 ALAGFLFDDERAMVRIDMSEYGEKHSVARLV 652


>gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
 gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 598

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 184 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASRV-RDLFRQA 240


>gi|33866037|ref|NP_897596.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. WH 8102]
 gi|33639012|emb|CAE08018.1| endopeptidase Clp ATP-binding chain B [Synechococcus sp. WH 8102]
          Length = 875

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 29/243 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L + +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 579 QLEDDLHQRVIGQNQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 632

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S+ LA          ++++++++ E   V R +      +   A   + E+ R   R  A
Sbjct: 633 SKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRR--RPYA 690

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I  +E                +VF   L+         D  V D      +F       
Sbjct: 691 VILFDE----------VEKAHPDVFNVMLQ------ILDDGRVTDGQGRTVDFTNTVLIL 734

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
              +    +        +   +   V +      R E    +D D +   S++  E   I
Sbjct: 735 TSNIGSQSILELAGDPEQHTAMEQRVNEALKAKFRPEFLNRLD-DQIIFRSLEKEELRRI 793

Query: 247 VFL 249
           V L
Sbjct: 794 VSL 796


>gi|326526385|dbj|BAJ97209.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1044

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ  A +AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 715 LEDELHKRVVGQDPAVKAVAEAI------QRSRAGLSDPNRPIASFMFMGPTGVGKTELA 768

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 769 KALASFMFNTEDAVVRIDMSEYMEKHSVSR 798


>gi|312371657|gb|EFR19786.1| hypothetical protein AND_21807 [Anopheles darlingi]
          Length = 419

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A   
Sbjct: 131 QDIAGQEVAKQALQEMVILPSMRPELFTGLRTP--AKGLLLFGPPGNGKTLLARAVATEC 188

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 189 SATFFSISAATLT-SKYVGEG-EKLVRALFAVA 219


>gi|253999943|ref|YP_003052006.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylovorus
           sp. SIP3-4]
 gi|253986622|gb|ACT51479.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylovorus
           sp. SIP3-4]
          Length = 761

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A++ A++                   + L  GPTGVGKT +
Sbjct: 449 KTLERDLKATVFGQDKAIEALSAAIK-----MARSGLGSTNKPIGSFLFSGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G   I+ +++++ E            GYVG     ++ + ++     
Sbjct: 504 ARQLAYTLGIELIRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLMTEAINKHPYC 558


>gi|237831685|ref|XP_002365140.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|211962804|gb|EEA97999.1| cell division protein, putative [Toxoplasma gondii ME49]
 gi|221506694|gb|EEE32311.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 978

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   LR+  + ++L A L     PK +LLVGP G GKTA++R +A
Sbjct: 79  NDLAGLTEAKTELQEVVQFLRDPSKFERLGARL-----PKGVLLVGPPGTGKTALARAVA 133

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG P+     ++F EI YVG+   ++ R L   A N 
Sbjct: 134 TEAGVPYFYASGSEFVEI-YVGQGARRV-RGLFSYARNH 170


>gi|195504964|ref|XP_002099305.1| GE23439 [Drosophila yakuba]
 gi|229559933|sp|B4PL32|SPAST_DROYA RecName: Full=Spastin
 gi|194185406|gb|EDW99017.1| GE23439 [Drosophila yakuba]
          Length = 758

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|169830065|ref|YP_001700223.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           sphaericus C3-41]
 gi|168994553|gb|ACA42093.1| Negative regulator of genetic competence clpC/mecB [Lysinibacillus
           sphaericus C3-41]
          Length = 813

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 21/224 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 501 QLEEELHKRVVGQGEAVEAISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R LA +        I+V+++++ E     R V      +             ++VR + 
Sbjct: 555 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYV----GFDDGGQLTEKVRRKP 610

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                  +LD +  + A  +   +  + L DG ++D +    V D  + +       GA 
Sbjct: 611 YSVV---LLDEI--EKAHPDVFNILLQVLEDGRLTDSK--GRVVDFRNTVVIMTSNVGAD 663

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                 S  F+      + K ++ ++ +   +  R E    ID 
Sbjct: 664 ALKYQKSLGFNVGGADSKHKDMKSTMLEELKKAFRPEFLNRIDE 707



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 98/285 (34%), Gaps = 48/285 (16%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D    I +F   G   VG   L+   ++VM       IR+ + +    + +  + RL+
Sbjct: 531 LKDPKRPIGSFIFLGPTGVGKTELARALAEVMFGDEDAMIRVDMSE---YMEKHSTSRLV 587

Query: 229 ----------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSRE 269
                     D   +     +    Y +V LDE +K         +   + G        
Sbjct: 588 GSPPGYVGFDDGGQLTEKVRRK--PYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGR 645

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASG-AFHVSRPADLL--------PEIQGRF 320
            V      ++  S+V              +    + H    + +L        PE   R 
Sbjct: 646 VVDFRNTVVIMTSNVGADALKYQKSLGFNVGGADSKHKDMKSTMLEELKKAFRPEFLNRI 705

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
              +   SL K   + I+    + L  +    +K + I L+ T+ +++ +A    +    
Sbjct: 706 DEMIVFHSLEKEHLKEIIAMMGNALTKR----LKEQDISLELTDAALEKIAQEGYD---- 757

Query: 381 VGDIGARRLQTVMERVLED-ISFSASD---LQEKTVVIDAEYVRL 421
               GAR L+  +++ +ED +S         +   V+ID  YV  
Sbjct: 758 -PQYGARPLRRALQKQVEDRLSEELLKGNVEKGNHVIID--YVND 799


>gi|167574957|ref|ZP_02367831.1| ATP-dependent metalloprotease, FtsH family protein [Burkholderia
           oklahomensis C6786]
          Length = 657

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ 
Sbjct: 170 DDIAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKA 222

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 223 VAGEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|320163732|gb|EFW40631.1| FTSH4 [Capsaspora owczarzaki ATCC 30864]
          Length = 775

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 92/269 (34%), Gaps = 32/269 (11%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  + Q+L   L     PK +LL GP G GKT +++ ++ 
Sbjct: 334 DVAGVDEAKEELTEIVEYLKDPEKFQRLGGRL-----PKGVLLYGPPGTGKTLLAKAISN 388

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVRE 124
            A A F     ++F E+ +VG   ++I R+L   A                 + R    +
Sbjct: 389 EAKASFFYASGSEFDEL-FVGVGSKRI-RELFAQAKRKSPAIIFIDEIDAIGASRTTRDQ 446

Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           Q S     ++L  + G          A +N  E+  K L      D+ + + + D     
Sbjct: 447 QFSKMTLNQLLIEMDGFKQNDGVIVIAATNFPELLDKALVRPGRFDRHVTVPLPDVLGRK 506

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM---DTV 233
              D+         N+          G        V          E D+++ M   +  
Sbjct: 507 QILDVHTKDIPVAKNVDLSIIARGTPGFSGAELAEVVNQAALKASVEGDKVVTMAHLEYA 566

Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGN 262
               I   E    V  D   KI A   G 
Sbjct: 567 KDKIIMGAERKSAVIDDSVRKITAYHEGG 595


>gi|317496540|ref|ZP_07954889.1| ATPase [Gemella moribillum M424]
 gi|316913343|gb|EFV34840.1| ATPase [Gemella moribillum M424]
          Length = 824

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 98/257 (38%), Gaps = 36/257 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   +IGQ +A  ++A A+     R+       +     + + +GPTGVGKT ++
Sbjct: 517 KLEEILHERVIGQDEAVTSLAKAV-----RRARSGFKAENRPIGSFIFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVG-RNVEQIIRDLVDVAINIVR 115
           + L+          I+++++++ E            GYVG     Q+   +     ++V 
Sbjct: 572 KSLSEALFSSEDNMIRIDMSEYMEPHSISRLVGAPPGYVGYEEAGQLSEQVRQKPYSVVL 631

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T  +      K     ++      E+ D    
Sbjct: 632 FDEIE----KAHPSIFNILLQVLDDGRLTDASGRTIDFKNTIIIMTSNVGVSELKDQK-- 685

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-----YPELMRDESDRLIDM 230
              F   GG+     +   + + +M + +K+     + +      +  L ++E +++   
Sbjct: 686 ---FVGFGGSESIKNDYKNVQNTMMEALKKQYRPEFLNRIDDIIVFKTLEKEELEKI--S 740

Query: 231 DTVHRDSIQMVENYGIV 247
           + + +   + +E+  I 
Sbjct: 741 ELLIKGLSKRLEDRNIT 757


>gi|284007736|emb|CBA73548.1| protein disaggregation chaperone [Arsenophonus nasoniae]
          Length = 863

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 MEQDLHKRVIGQNEAVDAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 622 KALANFLFDSDDAMVRIDMSEFMEKHTVSRLV 653


>gi|196013711|ref|XP_002116716.1| hypothetical protein TRIADDRAFT_31346 [Trichoplax adhaerens]
 gi|190580694|gb|EDV20775.1| hypothetical protein TRIADDRAFT_31346 [Trichoplax adhaerens]
          Length = 316

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G   AK+ +   +     R  +   LR    PK +LL GP G GKT I + +A  +
Sbjct: 41  DDICGLDFAKKTIKEIVVWPMLRPDIFKGLRGP--PKGLLLFGPPGTGKTLIGKCIAGQS 98

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            + F  +  +  T   +VG   E+++R L  VA    
Sbjct: 99  NSTFFSISASSLT-SKWVGEG-EKMVRALFAVARCQQ 133


>gi|190344740|gb|EDK36481.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 807

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 312 KDVAGCTESKEEIMEFV----KFLQDPVKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 367

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 368 EAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFKTA 400


>gi|8575704|gb|AAF78058.1|AF263561_3 ClpB protease [secondary endosymbiont of Glycaspis brimblecombei]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHKRVIGQNEAVDAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFLFDSDDAMVRIDMSEFMEKHTVSRLV 647


>gi|121999011|ref|YP_001003798.1| ATPase [Halorhodospira halophila SL1]
 gi|121590416|gb|ABM62996.1| ATPase AAA-2 domain protein [Halorhodospira halophila SL1]
          Length = 870

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 563 MEEALHERVVGQDEAIGAVANAIR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAEFLFDTQEAMVRIDMSEFMEKHSVAR 646


>gi|329767613|ref|ZP_08259134.1| hypothetical protein HMPREF0428_00831 [Gemella haemolysans M341]
 gi|328839240|gb|EGF88824.1| hypothetical protein HMPREF0428_00831 [Gemella haemolysans M341]
          Length = 824

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 93/237 (39%), Gaps = 34/237 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A  ++A A+     R+             + + +GPTGVGKT ++
Sbjct: 517 KLEEILHKRVIGQDEAVVSLAKAV-----RRARSGFKAPNRPIGSFIFLGPTGVGKTELA 571

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVG-RNVEQIIRDLVDVAINIVR 115
           + L+          I+++++++ E            GYVG     Q+   +     ++V 
Sbjct: 572 KSLSEALFSSEDNMIRIDMSEYMEPHSISRLVGAPPGYVGYEEAGQLSEQVRQKPYSVVL 631

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T  +      ++ D + +   +   V  +  +
Sbjct: 632 FDEIE----KAHPSIFNILLQVLDDGRLTDAS-----GRVVDFKNTIIIMTSNVGVSELN 682

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-----YPELMRDESDRL 227
              F   GG+     +   + + +M + +K+     + +      +  L ++E +++
Sbjct: 683 DQKFVGFGGSESIKNDYKNVQNTMMEALKKQYRPEFLNRIDDIIVFKTLEKEELEKI 739


>gi|322517676|ref|ZP_08070539.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           vestibularis ATCC 49124]
 gi|322123664|gb|EFX95256.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           vestibularis ATCC 49124]
          Length = 816

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 512 LEAELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 566

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  ++ +++++ E            GYVG +
Sbjct: 567 ALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607



 Score = 37.6 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL +   R I+      ++      +  +GI L F   ++  LA  
Sbjct: 709 PEFINRIDEKVVFHSLEEEQLREIVK----IMVKPLVSALAEKGIDLKFQPAALKHLAKD 764

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 765 GYDV-----EMGARPLRRTIQTQVED 785


>gi|312862613|ref|ZP_07722854.1| chaperone protein ClpB [Streptococcus vestibularis F0396]
 gi|311101873|gb|EFQ60075.1| chaperone protein ClpB [Streptococcus vestibularis F0396]
          Length = 816

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 512 LEAELHKRVIGQDEAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 566

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  ++ +++++ E            GYVG +
Sbjct: 567 ALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYD 607



 Score = 37.6 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL +   R I+      ++      +  +GI L F   ++  LA  
Sbjct: 709 PEFINRIDEKVVFHSLEEEQLREIVK----IMVKPLVSALAEKGIDLKFQPAALKHLAKD 764

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 765 GYDV-----EMGARPLRRTIQTQVED 785


>gi|288818874|ref|YP_003433222.1| ATP-dependent Clp protease [Hydrogenobacter thermophilus TK-6]
 gi|288788274|dbj|BAI70021.1| ATP-dependent Clp protease [Hydrogenobacter thermophilus TK-6]
 gi|308752461|gb|ADO45944.1| ATPase AAA-2 domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + +IGQ DA +AVA A+R    R ++    R        L +GPTGVGKT  ++
Sbjct: 495 IEEELKKRVIGQDDAIKAVARAIR----RSRVGLKGRH-RPIGVFLFLGPTGVGKTETAK 549

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++ +++++ E   V R
Sbjct: 550 ALAEYLFGTEDALVRFDMSEYMEKHTVSR 578


>gi|297568881|ref|YP_003690225.1| ATP-dependent metalloprotease FtsH [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924796|gb|ADH85606.1| ATP-dependent metalloprotease FtsH [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 663

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 18  RYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK  +      L++  +  +L   +     PK +LL+G  G GKT +++ +A
Sbjct: 153 EDVAGIDEAKEELEEIIDFLKDPSKFTRLGGRI-----PKGVLLMGSPGTGKTLLAKAIA 207

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV----DVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG    ++ RDL       A  I+     D V
Sbjct: 208 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFVQGKKNAPCIIFIDEIDAV 257


>gi|212716401|ref|ZP_03324529.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350934|ref|ZP_03741957.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660654|gb|EEB21229.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158390|gb|EEG71632.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 700

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD-- 108
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D  
Sbjct: 255 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 312

Query: 109 --VAINIVRESRRDEVREQ--------ASINAEERILDALVGKT-----------ATSNT 147
              A  I+     D V  +             E+ +   LV              A +N 
Sbjct: 313 KKNAPAIIFIDEIDAVGRKRGGSGMSGGHDEREQTLNQLLVEMDGFNNDTNLIIIAATNR 372

Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207
            +V    L      D+++ +E  D     +   +       + ++      V   G    
Sbjct: 373 PDVLDPALLRPGRFDRQVAVEAPDLEGREAILKVHAKGKPFVPDVDLHMIAVRTPGFTGA 432

Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242
              +V      L      +LID +    ++I  V+
Sbjct: 433 DLANVLNEAALLCARAGAQLID-NRAIDEAIDRVQ 466


>gi|196233971|ref|ZP_03132808.1| ATP-dependent chaperone ClpB [Chthoniobacter flavus Ellin428]
 gi|196222020|gb|EDY16553.1| ATP-dependent chaperone ClpB [Chthoniobacter flavus Ellin428]
          Length = 856

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ+ A  AV+ A+R      +  A L+DE  P  + + +GPTGVGKT +
Sbjct: 563 KMEDRLGARVIGQKQAITAVSNAVR------RARAGLQDENRPVGSFIFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA       +  ++++++++ E   V R
Sbjct: 617 ARALAEFLFDDESAMVRIDMSEYMEKHSVAR 647


>gi|170078948|ref|YP_001735586.1| endopeptidase Clp ATP-binding chain B1 [Synechococcus sp. PCC 7002]
 gi|169886617|gb|ACB00331.1| endopeptidase Clp ATP-binding chain B1 [Synechococcus sp. PCC 7002]
          Length = 864

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL R ++GQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LEAELHRRVVGQEEAVTAVAEAI------QRSRAGLADPNRPTASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+         ++++++++ E   V R
Sbjct: 622 KALAQFLFDTEEALVRIDMSEYMEKHAVSR 651


>gi|156100021|ref|XP_001615738.1| ATP-dependent metalloprotease [Plasmodium vivax SaI-1]
 gi|148804612|gb|EDL46011.1| ATP-dependent metalloprotease, putative [Plasmodium vivax]
          Length = 702

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E V      + G  + K+ +      L+N  +  ++ A L     PK ILL G  G G
Sbjct: 241 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKL-----PKGILLSGEPGTG 295

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT I+R +A  A  PF++   ++F E+ +VG    +I R+L   A   
Sbjct: 296 KTLIARAIAGEANVPFLQASGSEFEEM-FVGVGARRI-RELFQAAKKH 341


>gi|153820387|ref|ZP_01973054.1| chaperone ClpB [Vibrio cholerae NCTC 8457]
 gi|126509069|gb|EAZ71663.1| chaperone ClpB [Vibrio cholerae NCTC 8457]
          Length = 697

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 402 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 455

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 456 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 487


>gi|328852964|gb|EGG02106.1| ATP-dependent peptidase [Melampsora larici-populina 98AG31]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK   + V   L++  R  +L   L     P+ +LL GP G GKT ++R +A
Sbjct: 379 EDVHGCDSAKEELKEVVDFLKDPLRFARLGGRL-----PRGVLLTGPPGTGKTLLARAVA 433

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
             AG  F     ++F E+ YVG    +I
Sbjct: 434 GEAGVQFFIASGSEFDEM-YVGVGARRI 460


>gi|302774152|ref|XP_002970493.1| hypothetical protein SELMODRAFT_411118 [Selaginella moellendorffii]
 gi|300162009|gb|EFJ28623.1| hypothetical protein SELMODRAFT_411118 [Selaginella moellendorffii]
          Length = 1060

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ  A +AVA A+R      +  A L D   P  + + +GPTGVGKT +
Sbjct: 747 QLDDHLHKRLIGQDPAVKAVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTEL 800

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++ +++++ E   V R
Sbjct: 801 AKALAEYLFDTDKALLRFDMSEYMEKHAVSR 831


>gi|300172736|ref|YP_003771901.1| cell division protease [Leuconostoc gasicomitatum LMG 18811]
 gi|299887114|emb|CBL91082.1| Cell division protease ftsH homolog [Leuconostoc gasicomitatum LMG
           18811]
          Length = 695

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     PK +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVEFLKSPKKFVSLGARI-----PKGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 243 EANVPFFSMSGSDFVEM-FVGVGASRV-RDLFENA 275


>gi|296328517|ref|ZP_06871036.1| cell division protein FtsH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154326|gb|EFG95125.1| cell division protein FtsH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 713

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 273 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGEPGTGKTLLAKAVAG 327

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 328 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFSKARKNAPCIVFIDEIDAVGRK 379


>gi|295397687|ref|ZP_06807761.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
 gi|294974075|gb|EFG49828.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
          Length = 743

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L +++IGQ DA   +A A+     R+      R +    + L VGPTGVGKT ++R
Sbjct: 440 LDENLKQHVIGQDDAVEHIAKAI-----RRNRVGLSRQDRPIGSFLFVGPTGVGKTELAR 494

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +LA          ++ +++++ E            GYVG +
Sbjct: 495 QLAIQLFGRREALVRFDMSEYMEKHAVSKLIGSPPGYVGYD 535


>gi|253581057|ref|ZP_04858318.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847720|gb|EES75689.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 600

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 20  IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G Q+ K     V   L++  +  ++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 150 VAGLQEEKEDLVEVVDFLKSPQKYTKVGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 204

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQ 125
           AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V  Q
Sbjct: 205 AGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEGKRHAPCIIFIDEIDAVARQ 255


>gi|259909394|ref|YP_002649750.1| protein disaggregation chaperone [Erwinia pyrifoliae Ep1/96]
 gi|224965016|emb|CAX56546.1| Chaperone protein [Erwinia pyrifoliae Ep1/96]
 gi|283479467|emb|CAY75383.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Erwinia
           pyrifoliae DSM 12163]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQQLHTRVIGQHEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|225573964|ref|ZP_03782609.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038781|gb|EEG49027.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM
           10507]
          Length = 595

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  + K     V   L+   +  ++ A +     PK +LLVGP G GKT +++ +A  
Sbjct: 150 VAGLDEEKEDLQEVVDFLKAPQKYTKVGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 204

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           AG PF  +  + F E+ +VG     V  +  D    A  I+     D V  Q
Sbjct: 205 AGVPFFSISGSDFVEM-FVGVGASRVRDLFEDGKKHAPCIIFIDEIDAVARQ 255


>gi|222834611|gb|EEE73074.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
          +   L   ++GQ +A  AVA A+R      +  + L D   P    L +GPTGVGKT + 
Sbjct: 12 MEDRLHDRVVGQDEAISAVANAIR------RSRSGLSDPNRPTGSFLFLGPTGVGKTELC 65

Query: 71 RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
          + LA          +++++++F E   V R
Sbjct: 66 KALAGFLFDSEDHLVRIDMSEFMEKHSVAR 95


>gi|221487011|gb|EEE25257.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 978

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   LR+  + ++L A L     PK +LLVGP G GKTA++R +A
Sbjct: 79  NDLAGLTEAKTELQEVVQFLRDPSKFERLGARL-----PKGVLLVGPPGTGKTALARAVA 133

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG P+     ++F EI YVG+   ++ R L   A N 
Sbjct: 134 TEAGVPYFYASGSEFVEI-YVGQGARRV-RGLFSYARNH 170


>gi|254482819|ref|ZP_05096056.1| ATP-dependent chaperone ClpB [marine gamma proteobacterium
           HTCC2148]
 gi|214036900|gb|EEB77570.1| ATP-dependent chaperone ClpB [marine gamma proteobacterium
           HTCC2148]
          Length = 854

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 558 MEDELHSRVVGQDEAVVAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 611

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++V++++F E   V R
Sbjct: 612 KALAEFLFDSEQAMVRVDMSEFMEKHSVAR 641


>gi|210630009|ref|ZP_03296210.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
 gi|210160721|gb|EEA91692.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279]
          Length = 705

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +A   +   +R+     +    L  ++ P+ +LLVGP G GKT +++ +A  A
Sbjct: 213 KDVAGIDEAVEELEE-VRDFLSDSERFRKLGAKI-PRGVLLVGPPGTGKTLLAKAVAGEA 270

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           G PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 271 GVPFFTISGSEFVEM-FVGVGASRV-RDLFKSA 301


>gi|194910014|ref|XP_001982057.1| GG11247 [Drosophila erecta]
 gi|229559925|sp|B3P8A3|SPAST_DROER RecName: Full=Spastin
 gi|190656695|gb|EDV53927.1| GG11247 [Drosophila erecta]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|148271495|ref|YP_001221056.1| ATPase with chaperone activity, ATP-binding subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829425|emb|CAN00338.1| ATPase with chaperone activity, ATP-binding subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 730

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+ A RAVA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 422 LEQELGKRLIGQKQAVRAVADAV-----RRTRAGISDPDRPTGSFLFLGPTGVGKTELAK 476

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 477 ALAEFLFDDEKAMVRIDMSEYGEKFAVSRLV 507


>gi|157369917|ref|YP_001477906.1| ATP-dependent Clp protease ATP-binding subunit [Serratia
           proteamaculans 568]
 gi|157321681|gb|ABV40778.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Serratia
           proteamaculans 568]
          Length = 759

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A  A+  A++             D     + L  GPTGVGKT +
Sbjct: 449 RSLGDRLKMLVFGQDQAIEALTEAIK-----MSRAGLGHDRKPVGSFLFAGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 504 TVQLAKAMDIKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVLKHPHS 558


>gi|91793190|ref|YP_562841.1| ATPase AAA-2 [Shewanella denitrificans OS217]
 gi|91715192|gb|ABE55118.1| ATPase AAA-2 [Shewanella denitrificans OS217]
          Length = 753

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +   L   + GQ  A   ++ A+     R        D     + L  GPTGVGKT +
Sbjct: 451 RNLERNLKMVVFGQDKAIETLSAAI-----RLSRSGLGSDNQPVGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA       I+ +++++ E            GYVG     ++ D V    + 
Sbjct: 506 TNQLAASLSLKLIRFDMSEYMERHTVSRLIGAPPGYVGYEQGGLLTDAVIKNPHC 560


>gi|41409951|ref|NP_962787.1| ClpB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|54035777|sp|Q73T66|CLPB_MYCPA RecName: Full=Chaperone protein ClpB
 gi|41398784|gb|AAS06403.1| ClpB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 848

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRVVGQKRAVQAVSDAV-----RRARAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALADFLFDDKRAMVRIDMSEYGEKHSVARLV 649


>gi|310766698|gb|ADP11648.1| protein disaggregation chaperone [Erwinia sp. Ejp617]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQQLHTRVIGQHEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|298500822|ref|ZP_07010625.1| chaperone clpB [Vibrio cholerae MAK 757]
 gi|297540603|gb|EFH76661.1| chaperone clpB [Vibrio cholerae MAK 757]
          Length = 678

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ++A   VA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKRVIGQKEAVEVVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V++++F E   V R V
Sbjct: 616 KTLANFLFDSEDAMVRVDMSEFMEKHSVARLV 647


>gi|326778547|ref|ZP_08237812.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658880|gb|EGE43726.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 863

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 528 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 581

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 582 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 611


>gi|255710671|ref|XP_002551619.1| KLTH0A03696p [Lachancea thermotolerans]
 gi|238932996|emb|CAR21177.1| KLTH0A03696p [Lachancea thermotolerans]
          Length = 781

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 485 EIVVHGDEVHWDDIAGLESAKSSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 542

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 543 TMLARAVATESNSTFFSISASSLT-SKYLGES-EKLVRALFAIA 584


>gi|182437911|ref|YP_001825630.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466427|dbj|BAG20947.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 842

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 647

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +  ++ A +     PK +LL GP G GKT +++ +A  AG PF     + F E+ 
Sbjct: 193 LKNPSKYAKMGARI-----PKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEV- 246

Query: 94  YVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ 125
           YVG    +I RDL       A  IV     + V ++
Sbjct: 247 YVGLGASRI-RDLFKEAQLSAPCIVFIDEIEAVAKK 281


>gi|163868097|ref|YP_001609301.1| Clp protease subunit [Bartonella tribocorum CIP 105476]
 gi|161017748|emb|CAK01306.1| Clp protease subunit [Bartonella tribocorum CIP 105476]
          Length = 783

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   + GQ  A   +  +++         A LR+   P  + L  GPTGVGKT +
Sbjct: 456 KLERELKHVVYGQDQAISVLVSSIK------LARAGLREPDKPIGSYLFSGPTGVGKTEV 509

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           +++LA   G   ++ +++++ E            GY+G +   ++ D VD   +
Sbjct: 510 AKQLASSLGIELLRFDMSEYMERHTVARLIGAPPGYIGFDQGGLLTDAVDQKPH 563


>gi|322411598|gb|EFY02506.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 702

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI + L  ++IGQ  A  AVA A+     R+             + L VGPTGVGKT +
Sbjct: 410 KEISNRLKGHVIGQDGAVEAVARAI-----RRNRAGFDDGNRPIGSFLFVGPTGVGKTEL 464

Query: 70  SRRLARLA---GAPFIKVEVTKF-----------TEIGYVGRN 98
           +++LA          I+++++++           T  GY+G +
Sbjct: 465 AKQLALDLFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYD 507


>gi|296132947|ref|YP_003640194.1| Vesicle-fusing ATPase [Thermincola sp. JR]
 gi|296031525|gb|ADG82293.1| Vesicle-fusing ATPase [Thermincola potens JR]
          Length = 499

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 30/228 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ A   +  AL +  +  +   +L      K ILL GP G GKT +++  A   
Sbjct: 67  DDIGGQETAINELKEAL-DFIKSYEKIKELGI-RPLKGILLTGPPGTGKTMMAKAAATYT 124

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            A F+    ++F E+ Y G   +++ R L   A    RE      +  A I  +E  +D 
Sbjct: 125 DAEFLATSGSEFIEM-YAGVGAQRV-RRLFAAA----REKANKNNKSNAIIFIDE--IDV 176

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFS 197
           L GK   + +   + + L         ++++       +   D      V   N  ++  
Sbjct: 177 LGGKRGQTTSHMEYDQTLNQL-----LVEMD------GMKTDDSVRILLVAATNRIDMLD 225

Query: 198 KVMGSGRKKKIRMSV----QKCYPELMRDESDR-----LIDMDTVHRD 236
             +    +    + V    ++   ++++  +        +D+D + R+
Sbjct: 226 PALLRPGRFDRHVKVDLPSREGRKQILQIHTRNKPLAGDVDLDELARE 273


>gi|239942194|ref|ZP_04694131.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           15998]
 gi|239988660|ref|ZP_04709324.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
           11379]
 gi|291445649|ref|ZP_06585039.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
 gi|291348596|gb|EFE75500.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
          Length = 842

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|256423011|ref|YP_003123664.1| ATP-dependent chaperone ClpB [Chitinophaga pinensis DSM 2588]
 gi|256037919|gb|ACU61463.1| ATP-dependent chaperone ClpB [Chitinophaga pinensis DSM 2588]
          Length = 871

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 101/244 (41%), Gaps = 27/244 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ++A  AV+ A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 563 LEEELHKRVVGQEEAIVAVSDAIR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA       +   +++++++ E   V R V      +             + VR +  
Sbjct: 617 KALAEYLFDDDSMMTRIDMSEYQEKHAVSRLVGAPPGYV----GYDEGGQLTEAVRRKPY 672

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                 +LD +  + A  +T  +  + L DG ++D            +  N  I   +++
Sbjct: 673 SVV---LLDEI--EKAHPDTFNILLQVLDDGRLTDN------KGRVVNFKNTIIIMTSNM 721

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVHRDSIQMVENYG 245
           G   + E F ++  S R+  +  +  +    L +      ++   + +    +   E  G
Sbjct: 722 GSQIIQENFERIDESNREDVVDATKAEVMNLLKQTIRPEFLNRVDEVIMFQPLLREEIKG 781

Query: 246 IVFL 249
           I+ +
Sbjct: 782 IINI 785


>gi|227489340|ref|ZP_03919656.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090713|gb|EEI26025.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 776

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 266


>gi|152979666|ref|YP_001345295.1| ATPase [Actinobacillus succinogenes 130Z]
 gi|150841389|gb|ABR75360.1| ATPase AAA-2 domain protein [Actinobacillus succinogenes 130Z]
          Length = 856

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHKRVVGQSEAVEAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFMFDDENAMVRIDMSEFMEKHSVSRLV 647


>gi|118470039|ref|YP_885138.1| chaperone ClpB [Mycobacterium smegmatis str. MC2 155]
 gi|118171326|gb|ABK72222.1| chaperone ClpB [Mycobacterium smegmatis str. MC2 155]
          Length = 848

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEEELGKRVVGQRKAVQAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|54035803|sp|Q7U637|CLPB1_SYNPX RecName: Full=Chaperone protein ClpB 1
          Length = 862

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 29/243 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L + +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLEDDLHQRVIGQNQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           S+ LA          ++++++++ E   V R +      +   A   + E+ R   R  A
Sbjct: 620 SKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRR--RPYA 677

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
            I  +E                +VF   L+         D  V D      +F       
Sbjct: 678 VILFDE----------VEKAHPDVFNVMLQ------ILDDGRVTDGQGRTVDFTNTVLIL 721

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
              +    +        +   +   V +      R E    +D D +   S++  E   I
Sbjct: 722 TSNIGSQSILELAGDPEQHTAMEQRVNEALKAKFRPEFLNRLD-DQIIFRSLEKEELRRI 780

Query: 247 VFL 249
           V L
Sbjct: 781 VSL 783


>gi|320536680|ref|ZP_08036693.1| putative hemolysin B [Treponema phagedenis F0421]
 gi|320146471|gb|EFW38074.1| putative hemolysin B [Treponema phagedenis F0421]
          Length = 823

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I +EL + +IGQ +A   ++ A+     R+        E    + L +GPTGVGKT +++
Sbjct: 497 IETELRKKVIGQDEAVSILSNAI-----RRSRAGIASPERPIGSFLFLGPTGVGKTLLAK 551

Query: 72  RLARLA---GAPFIKVEVTKFTEIG 93
            LA          I+++++ + E  
Sbjct: 552 TLAEFLFGSAESLIRIDMSDYMEKH 576


>gi|251789966|ref|YP_003004687.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya zeae
           Ech1591]
 gi|247538587|gb|ACT07208.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya zeae
           Ech1591]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           R +   L   + GQ +A  A+  A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 449 RNLGDRLKMLVFGQDNAIEALTEAIK------MSRAGLGHERKPVGSFLFAGPTGVGKTE 502

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 503 VTVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHS 558


>gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 805

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL---MPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +   +          A++ ++L   +P+ +LL GP G GKT ++R +A 
Sbjct: 167 DVAGADEAVDELQEVV-----DFLQDAEIYEQLGAKIPRGVLLYGPPGTGKTLLARAVAG 221

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  + +   + A  I+     D V
Sbjct: 222 EAGVPFYSISGSDFVEM-FVGVGASRVRDLFKQARENAPCIIFVDEIDAV 270


>gi|38234653|ref|NP_940420.1| putative ATP-dependent protease regulatory subunit, ClpB
           [Corynebacterium diphtheriae NCTC 13129]
 gi|54035766|sp|Q6NF05|CLPB_CORDI RecName: Full=Chaperone protein ClpB
 gi|38200917|emb|CAE50634.1| Putative ATP-dependent protease regulatory subunit, ClpB
           [Corynebacterium diphtheriae]
          Length = 849

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MEAELGKRVVGQSEAVVAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 618 ALAEFMFDDDRAMVRIDMSEYGEKHAVARLV 648


>gi|30250327|ref|NP_842397.1| ClpB ATPase dependent protease, chaperonin [Nitrosomonas europaea
           ATCC 19718]
 gi|54035824|sp|Q82SD8|CLPB_NITEU RecName: Full=Chaperone protein ClpB
 gi|30181122|emb|CAD86314.1| ClpB ATPase dependent protease, chaperonin [Nitrosomonas europaea
           ATCC 19718]
          Length = 863

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 567 MEDKLHERVIGQDEAVRLVSDAIR------RSRSGLADPNRPYGSFLFLGPTGVGKTELC 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V++++F E   V R
Sbjct: 621 KALAGFLFDSEEHLIRVDMSEFMEKHSVAR 650


>gi|269967654|ref|ZP_06181704.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           alginolyticus 40B]
 gi|269827741|gb|EEZ82025.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           alginolyticus 40B]
          Length = 755

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 446 SDKDILKNLDSKMKMLVFGQDNAIDALSEAIK-----LTRAGLGVDNKPVGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 501 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 560

Query: 113 I 113
            
Sbjct: 561 S 561


>gi|225018460|ref|ZP_03707652.1| hypothetical protein CLOSTMETH_02407 [Clostridium methylpentosum
           DSM 5476]
 gi|224948769|gb|EEG29978.1| hypothetical protein CLOSTMETH_02407 [Clostridium methylpentosum
           DSM 5476]
          Length = 813

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ +A  A++ A+R      +    L+D   P  + L +GPTGVGKT + 
Sbjct: 510 LESILHKRVIGQDEAVTAISKAIR------RGRVGLKDPKRPIGSFLFLGPTGVGKTELC 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA       +  I+++++++ E   V R V  
Sbjct: 564 KTLAEALFGDESSMIRLDMSEYMEKHSVSRMVGS 597


>gi|255943197|ref|XP_002562367.1| Pc18g05400 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587100|emb|CAP94764.1| Pc18g05400 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 917

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 88/262 (33%), Gaps = 34/262 (12%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +AK  +   +       Q P         +P+  +L GP G GKT +++  A  
Sbjct: 433 DVAGMDEAKVEIMEFV----SFLQQPERFEKLGAKIPRGAILSGPPGTGKTLLAKATAGE 488

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA-- 130
           +G PF  V  ++F E+ +VG     V  +  +       I+     D + + +A  N   
Sbjct: 489 SGVPFYSVSGSEFVEM-FVGVGPSRVRDLFANARKNTPCIIFIDEIDAIGKSRAKSNVGG 547

Query: 131 --EER------ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174
             +ER      IL  + G   +         N  +V  K L      D+ I I+      
Sbjct: 548 GNDERESTLNQILTEMDGFNTSEQVVVLAGTNRPDVLDKALMRPGRFDRHISIDRPTMDG 607

Query: 175 DISNFDIPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI--D 229
               F +          +  +    + +        I   V +      R  +D+++   
Sbjct: 608 RKQIFRVYLKKIVTDENLEYMEGRLAALTPGFAGADIANCVNEAALVAARQNADKVVMKH 667

Query: 230 MDTVHRDSIQMVENYGIVFLDE 251
            +      I  +E   +V   E
Sbjct: 668 FEQAIERVIGGLEKKSLVLSPE 689


>gi|197103260|ref|YP_002128638.1| ATPase with chaperone activity, ATP-binding subunit
           [Phenylobacterium zucineum HLK1]
 gi|196480536|gb|ACG80063.1| ATPase with chaperone activity, ATP-binding subunit
           [Phenylobacterium zucineum HLK1]
          Length = 868

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEEALGKRVIGQSHAISAVSKAVR------RARAGLKDPHRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAGFLFDDDTAMVRIDMSEFMEKHAVAR 646


>gi|194477006|ref|YP_002049185.1| cell division protein ftsH [Paulinella chromatophora]
 gi|171192013|gb|ACB42975.1| cell division protein ftsH [Paulinella chromatophora]
          Length = 615

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G + AK     V   L+N  R   L A +     PK ILL G  G GKT +++ +A 
Sbjct: 160 DVAGVEGAKIELEEVVDFLKNPDRFTSLGAKI-----PKGILLAGSPGTGKTLLAKAVAG 214

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 215 EARVPFFSIAGSEFVEM-FVGVGASRV-RDLFEQA 247


>gi|167623652|ref|YP_001673946.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           halifaxensis HAW-EB4]
 gi|167353674|gb|ABZ76287.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella
           halifaxensis HAW-EB4]
          Length = 752

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   ++ A+     R        +     + L  GPTGVGKT +
Sbjct: 450 KNLERNLKMVVFGQDLAIEGLSAAI-----RLSRSGLGGENKPVGSFLFAGPTGVGKTEV 504

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 TSQLAKCLSLNLVRFDMSEYMESHTVSRLIGAPPGYVGYDQGGLLTDAVIKNPHC 559


>gi|152992606|ref|YP_001358327.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
 gi|151424467|dbj|BAF71970.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
          Length = 557

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 21/237 (8%)

Query: 40  RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN- 98
           R+       D  +PK +LLVGP GVGKT IS+ +A  AG PF       F  I YVG   
Sbjct: 179 REPQKYRDMDIRLPKGVLLVGPPGVGKTLISKAVAGEAGVPFFYQSGASFVHI-YVGMGA 237

Query: 99  --VEQIIRDLVDVAINIVRESRRDEV-REQASINAEER------ILDALVGKTATS---- 145
             V ++ +    +A +I+     D V + +     +ER      +L  + G   +S    
Sbjct: 238 KRVSELFKKAKQMAPSIIFIDEIDAVGKSRGEFRNDEREATLNQLLTEMDGFEESSGVIV 297

Query: 146 ----NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201
               N  +V  + L      D+ I I + D    +   ++        +++ E  +++  
Sbjct: 298 IGATNKIDVLDEALLRAGRFDRRIHISLPDLEDRMKILELYLAHKPNNVDI-ESVARMTV 356

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMD-TVHRDSIQMVENYGIVFLDEFDKIVA 257
                 +     +     MR+    + + D    ++ + + +   + F +E  KI A
Sbjct: 357 GFNSAALDTLTNEAAIYAMREGRKVVENSDFEAVKEKVLLGKRKILSFTEEERKIQA 413


>gi|146422531|ref|XP_001487202.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 807

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G  ++K  +   +    +  Q P         +P+  +L GP G GKT +++  A 
Sbjct: 312 KDVAGCTESKEEIMEFV----KFLQDPVKYEKLGAKIPRGAILSGPPGTGKTLLAKATAG 367

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 368 EAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFKTA 400


>gi|118616025|ref|YP_904357.1| endopeptidase ATP binding protein (chain B) ClpB [Mycobacterium
           ulcerans Agy99]
 gi|118568135|gb|ABL02886.1| endopeptidase ATP binding protein (chain B) ClpB [Mycobacterium
           ulcerans Agy99]
          Length = 848

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   +IGQ+ A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGHRVIGQKKAVQAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|188493942|ref|ZP_03001212.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 53638]
 gi|188489141|gb|EDU64244.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 53638]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|294784704|ref|ZP_06749992.1| cell division protein FtsH [Fusobacterium sp. 3_1_27]
 gi|294486418|gb|EFG33780.1| cell division protein FtsH [Fusobacterium sp. 3_1_27]
          Length = 707

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 267 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGEPGTGKTLLAKAVAG 321

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 322 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 373


>gi|291287614|ref|YP_003504430.1| ATP-dependent chaperone ClpB [Denitrovibrio acetiphilus DSM 12809]
 gi|290884774|gb|ADD68474.1| ATP-dependent chaperone ClpB [Denitrovibrio acetiphilus DSM 12809]
          Length = 867

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ ++R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 566 MEDYLHKRVVGQDNAIRVVSESVR------RSRAGLNDPGKPIGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 620 KSLAEFLFDSEDAIVRIDMSEYMEKHSVAR 649


>gi|254456778|ref|ZP_05070206.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Campylobacterales bacterium GD 1]
 gi|207085570|gb|EDZ62854.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Campylobacterales bacterium GD 1]
          Length = 859

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL+R +IGQ  A  AV+ A++      +  A L D   P  + L +GPTGVGKT  ++ 
Sbjct: 568 AELNRDVIGQAKATHAVSRAIK------RNKAGLSDANTPIGSFLFLGPTGVGKTQTAKT 621

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           LA+         I+++++++ E   V R V      +       + E+ R +
Sbjct: 622 LAKFLFDSEDSMIRIDMSEYMEKHAVSRLVGAAPGYVGYEEGGQLTEAVRRK 673


>gi|254393706|ref|ZP_05008829.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
 gi|294813216|ref|ZP_06771859.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
           27064]
 gi|326441673|ref|ZP_08216407.1| putative ATP-dependent Clp protease [Streptomyces clavuligerus ATCC
           27064]
 gi|197707316|gb|EDY53128.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
 gi|294325815|gb|EFG07458.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
           27064]
          Length = 841

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|170781307|ref|YP_001709639.1| putative ATP-dependent protease ATP-binding subunit [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155875|emb|CAQ01002.1| putative ATP-dependent protease ATP-binding subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 730

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+ A RAVA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 422 LEQELGKRLIGQKQAVRAVADAV-----RRTRAGISDPDRPTGSFLFLGPTGVGKTELAK 476

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 477 ALAEFLFDDEKAMVRIDMSEYGEKFAVSRLV 507


>gi|163743640|ref|ZP_02151016.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Phaeobacter
           gallaeciensis 2.10]
 gi|161383111|gb|EDQ07504.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Phaeobacter
           gallaeciensis 2.10]
          Length = 899

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L   +IGQ  A  AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 588 MEADLHGRVIGQDAAVTAVSNAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 641

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  ++V++++F E   V R
Sbjct: 642 KAVADFLFDDDSAMVRVDMSEFMEKHAVAR 671


>gi|94971790|ref|YP_593838.1| ATPase AAA-2 [Candidatus Koribacter versatilis Ellin345]
 gi|94553840|gb|ABF43764.1| ATPase AAA-2 [Candidatus Koribacter versatilis Ellin345]
          Length = 878

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + +IGQ  A   VA A+R      +  A L D   P  + + +GPTGVGKT +
Sbjct: 566 EMEDRLSQRVIGQDAAIEHVANAIR------RSRAGLSDPKRPIGSFIFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 620 ARALAAFLFDDEHAMVRIDMSEYGEKHSVSR 650


>gi|91783442|ref|YP_558648.1| heat-shock protein, chaperone ClpB [Burkholderia xenovorans LB400]
 gi|296157752|ref|ZP_06840586.1| ATP-dependent chaperone ClpB [Burkholderia sp. Ch1-1]
 gi|91687396|gb|ABE30596.1| Heat-shock protein, chaperone ClpB [Burkholderia xenovorans LB400]
 gi|295891998|gb|EFG71782.1| ATP-dependent chaperone ClpB [Burkholderia sp. Ch1-1]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           +I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 567 QIEEKLHARVVGQDEAISAVADAIR------RSRAGLSDPNRPYGSFLFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 621 CKALASFLFDSEDHLIRIDMSEFMEKHSVAR 651


>gi|90961178|ref|YP_535094.1| negative regulator of genetic competence [Lactobacillus salivarius
           UCC118]
 gi|90820372|gb|ABD99011.1| Negative regulator of genetic competence [Lactobacillus salivarius
           UCC118]
          Length = 830

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 33/260 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 516 LEKILHNRVIGQDEAVKAVSKAIR------RARSGLKDPTRPIGSFMFLGPTGVGKTELA 569

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+++++++ E            GYVG +       L +   N    
Sbjct: 570 KALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYD---EGGQLTEKVRNNPYS 626

Query: 117 SRRDEVREQASINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +  E+A  +    +L  L  G    S  R+V  +       S+        + S  
Sbjct: 627 VVLLDEVEKAHNDVFNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVG 686

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI------D 229
               D+          + E   K        ++   V   +  L ++E  +++       
Sbjct: 687 FGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDEIVV--FHSLNKEEIHQIVKLMAKNI 744

Query: 230 MDTVHRDSIQMVENYGIVFL 249
           +D +   +I +      + +
Sbjct: 745 IDRIKEQNINLKITPAAIDI 764



 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344
           S  +G+ +        +     +      PE   R    V   SLNK +   I+     N
Sbjct: 684 SVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDEIVVFHSLNKEEIHQIVKLMAKN 743

Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           +I + KE    + I L  T  +ID +A+   +      + GAR ++ +++  +ED+ 
Sbjct: 744 IIDRIKE----QNINLKITPAAIDIVAEAGFDA-----EYGARPIRRILQDKIEDLL 791


>gi|77917974|ref|YP_355789.1| heat shock protein ClpB-like [Pelobacter carbinolicus DSM 2380]
 gi|77544057|gb|ABA87619.1| heat shock protein ClpB-like protein [Pelobacter carbinolicus DSM
           2380]
          Length = 872

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A + VA A+       +  A ++D   P  + + +GPTGVGKT +
Sbjct: 569 KLDEVLHRRVVGQDEAVQLVADAV------IRARAGIKDPRRPIGSFIFLGPTGVGKTEL 622

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 623 ARTLAEALFDSEDNMVRIDMSEYMEKHTVSR 653


>gi|24375079|ref|NP_719122.1| clpB protein [Shewanella oneidensis MR-1]
 gi|54035853|sp|Q8EBE6|CLPB_SHEON RecName: Full=Chaperone protein ClpB
 gi|24349835|gb|AAN56566.1|AE015794_4 clpB protein [Shewanella oneidensis MR-1]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDSESALVRIDMSEFMEKHAVSRLV 647


>gi|66812296|ref|XP_640327.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|74897137|sp|Q54SY2|NVL_DICDI RecName: Full=Putative ribosome biogenesis ATPase nvl; AltName:
           Full=Nuclear valosin-containing protein-like
 gi|60468363|gb|EAL66370.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 867

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
            P+ ILL GP+G GKT +++ +A     P   +  T+ T  G  G +   V  +  + + 
Sbjct: 249 PPRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEIT-SGVSGESEARVRTLFSNAIA 307

Query: 109 VAINIVRESRRDEV---REQASINAEERIL-------DALVGKTATSNTREVFRKKLRDG 158
            A  I+     D +   RE AS + E RI+       D+L   ++ ++T E   +  +  
Sbjct: 308 QAPCIIFIDEIDAIAPKRESASKDMERRIVSQLLTCMDSLNYLSSNNSTNEPNEQTEQQQ 367

Query: 159 EISDKEIDIE 168
           +     I+++
Sbjct: 368 QQQQDIIEVD 377



 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            P  +L+ GP G GKT +++ +A    A FI V+  +     YVG + E+ +R +   A
Sbjct: 599 SPAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELLNK-YVGES-ERAVRQVFQRA 655


>gi|53723604|ref|YP_103036.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei ATCC 23344]
 gi|67639679|ref|ZP_00438519.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei GB8 horse
           4]
 gi|121598639|ref|YP_993186.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei SAVP1]
 gi|124385885|ref|YP_001026039.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei NCTC 10229]
 gi|126448469|ref|YP_001080692.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei NCTC 10247]
 gi|167003461|ref|ZP_02269247.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei PRL-20]
 gi|254178097|ref|ZP_04884752.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei ATCC 10399]
 gi|254206315|ref|ZP_04912667.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei JHU]
 gi|254358273|ref|ZP_04974546.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei
           2002721280]
 gi|52427027|gb|AAU47620.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei ATCC 23344]
 gi|121227449|gb|ABM49967.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei SAVP1]
 gi|124293905|gb|ABN03174.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei NCTC
           10229]
 gi|126241339|gb|ABO04432.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei NCTC
           10247]
 gi|147753758|gb|EDK60823.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei JHU]
 gi|148027400|gb|EDK85421.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei
           2002721280]
 gi|160699136|gb|EDP89106.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           mallei ATCC 10399]
 gi|238520268|gb|EEP83730.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei GB8 horse
           4]
 gi|243061022|gb|EES43208.1| ATP-dependent chaperone protein ClpB [Burkholderia mallei PRL-20]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|304437097|ref|ZP_07397060.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370048|gb|EFM23710.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 664

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   L+   +  +L A +     PK +LL GP G GKT +++ +A 
Sbjct: 161 DVAGADEAKQELEEVVEFLKTPDKFNELGARI-----PKGVLLFGPPGTGKTLLAKAVAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG  F  +  + F E+ +VG    ++ RDL + A
Sbjct: 216 EAGVQFFTISGSDFVEM-FVGVGASRV-RDLFEQA 248


>gi|225010890|ref|ZP_03701357.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
 gi|225004937|gb|EEG42892.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
          Length = 691

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G + AK  +   + +  ++ +    L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 194 KDVAGLEGAKEEIEEIV-SFLKQPEKYTSLGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 251

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 252 KVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 282


>gi|118466771|ref|YP_883920.1| chaperone ClpB [Mycobacterium avium 104]
 gi|254777230|ref|ZP_05218746.1| chaperone ClpB [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168058|gb|ABK68955.1| chaperone ClpB [Mycobacterium avium 104]
          Length = 848

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRVVGQKRAVQAVSDAV-----RRARAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|319646264|ref|ZP_08000494.1| ClpE protein [Bacillus sp. BT1B_CT2]
 gi|317392014|gb|EFV72811.1| ClpE protein [Bacillus sp. BT1B_CT2]
          Length = 698

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+ + L   +IGQ++A + VA A+     R+             + L VGPTGVGKT +
Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAV-----RRSRAGLKSKNRPVGSFLFVGPTGVGKTEL 453

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           S+RLA          I+++++++ E   V + +  
Sbjct: 454 SKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGS 488



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 133/377 (35%), Gaps = 79/377 (20%)

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEER--ILDALVG------KTATSNTREVFR 152
           ++   L D    + ++    E  ++A++ AE+   I++   G      +       +   
Sbjct: 343 ELAAKLRDEEEALHKKMESHEEEKRATVEAEDIQAIIEQKTGIPVGKLQHDDQKKMKELE 402

Query: 153 KKLRDGEISDKEIDIEVAD-----------TSSDISNFDIPGGASVGILNLSELFSKVMG 201
             L    I  KE   +VA             +  + +F   G   VG   LS+  ++ + 
Sbjct: 403 AHLSSRVIGQKEAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKRLAEELF 462

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLI--------DMDTVHRDSIQMVENYGIVFLDEFD 253
             +   IR+ + +    + +    +LI          +            Y IV LDE +
Sbjct: 463 GTKDAIIRLDMSE---YMEKHAVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIE 519

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDHILFIASGAFHVSRPAD- 311
           K            +   VQ   L ++E G    ++  +++    + I +    VS     
Sbjct: 520 K------------AHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGVSEKRTT 567

Query: 312 ----------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                   PE   RF   +  + L K D   I     + L+ + 
Sbjct: 568 VGFNREEQVMGEQSMIDSLSGYFKPEFLNRFDSIIEFQPLEKEDLVKIA----ALLLKEL 623

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ----TVMERVLEDISFSAS 405
           +E +K + + L+ ++++ + +A++  +        GAR L+    T +E  + D+     
Sbjct: 624 EETLKEQNMTLEVSDEAKEKIAEIGYH-----PAFGARPLRRTIQTAVEDQMTDLLLEEE 678

Query: 406 DLQEKTVVIDAEYVRLH 422
            ++   V+++ + +R+ 
Sbjct: 679 HIKGFAVIVENDEIRVK 695


>gi|224172335|ref|XP_002199578.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 480

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + ++GQ+DA RA+A A+R      +  A L D   P  + + +G TGVGKT ++
Sbjct: 176 LEAELHQRVVGQEDAIRAIADAVR------RSRAGLNDPRRPIGSFIFLGTTGVGKTELA 229

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA           +++++++ E   V R V      +             + VR +  
Sbjct: 230 KALAEYLFDDENMMTRIDMSEYQEKHSVSRLVGAPPGYV----GYEEGGQLTESVRRKPY 285

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++      A  +T  +  + L DG ++D          + +  N  I   +++
Sbjct: 286 QVVLFDEIEK-----AHPDTFNILLQVLDDGRLTDN------KGRNVNFKNTIIIMTSNM 334

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221
           G   + E FSK+    + K +  +  +    L  
Sbjct: 335 GSQLIRENFSKLTPQNKPKVVEETKAQVLEMLKE 368


>gi|255541358|ref|XP_002511743.1| Spastin, putative [Ricinus communis]
 gi|223548923|gb|EEF50412.1| Spastin, putative [Ricinus communis]
          Length = 518

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK+++   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 246 DDVAGLEKAKQSLMEMVILPTKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 303

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VAI+  
Sbjct: 304 EATFFNVSASSLT-SKWVGEG-EKLVRTLFMVAISRQ 338


>gi|198467899|ref|XP_001354546.2| GA15413 [Drosophila pseudoobscura pseudoobscura]
 gi|198146158|gb|EAL31599.2| GA15413 [Drosophila pseudoobscura pseudoobscura]
          Length = 822

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 344 LFRDVAGLSEAKQEVKEFVDYLKTPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 398

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 399 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKMRAPCIIYIDEIDAI 450


>gi|194887449|ref|XP_001976737.1| GG18614 [Drosophila erecta]
 gi|190648386|gb|EDV45664.1| GG18614 [Drosophila erecta]
          Length = 822

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK   R     L++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 342 LFRDVAGLSEAKQEVREFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 396

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 397 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 448


>gi|149909286|ref|ZP_01897942.1| ATP-dependent Zn protease [Moritella sp. PE36]
 gi|149807603|gb|EDM67551.1| ATP-dependent Zn protease [Moritella sp. PE36]
          Length = 645

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  VA     L++  R Q+L   +     P  ILLVG  G GKT +++ +A 
Sbjct: 153 DVAGCDEAKEEVAELVDYLKDPSRFQKLGGKI-----PTGILLVGSPGTGKTLLAKAIAG 207

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RD+ + A
Sbjct: 208 EAKVPFFTISGSDFVEM-FVGVGASRV-RDMFEQA 240


>gi|189425579|ref|YP_001952756.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
 gi|189421838|gb|ACD96236.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ]
          Length = 635

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV---- 107
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL     
Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFLQGK 247

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 248 KNAPCIIFIDEIDAV 262


>gi|52079919|ref|YP_078710.1| ATP-dependent Clp protease-like (class III stress gene) ClpE
           [Bacillus licheniformis ATCC 14580]
 gi|52785290|ref|YP_091119.1| ClpE [Bacillus licheniformis ATCC 14580]
 gi|52003130|gb|AAU23072.1| ATP-dependent Clp protease-like (class III stress gene) ClpE
           [Bacillus licheniformis ATCC 14580]
 gi|52347792|gb|AAU40426.1| ClpE [Bacillus licheniformis ATCC 14580]
          Length = 698

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+ + L   +IGQ++A + VA A+     R+             + L VGPTGVGKT +
Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAV-----RRSRAGLKSKNRPVGSFLFVGPTGVGKTEL 453

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           S+RLA          I+++++++ E   V + +  
Sbjct: 454 SKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGS 488



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 133/377 (35%), Gaps = 79/377 (20%)

Query: 101 QIIRDLVDVAINIVRESRRDEVREQASINAEER--ILDALVG------KTATSNTREVFR 152
           ++   L D    + ++    E  ++A++ AE+   I++   G      +       +   
Sbjct: 343 ELAAKLRDEEEALHKKMESHEEEKRATVEAEDIQAIIEQKTGIPVGKLQHDDQKKMKELE 402

Query: 153 KKLRDGEISDKEIDIEVAD-----------TSSDISNFDIPGGASVGILNLSELFSKVMG 201
             L    I  KE   +VA             +  + +F   G   VG   LS+  ++ + 
Sbjct: 403 AHLSSRVIGQKEAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKRLAEELF 462

Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLI--------DMDTVHRDSIQMVENYGIVFLDEFD 253
             +   IR+ + +    + +    +LI          +            Y IV LDE +
Sbjct: 463 GTKDAIIRLDMSE---YMEKHAVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIE 519

Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVE-GSSVSTKYGSINTDHILFIASGAFHVSRPAD- 311
           K            +   VQ   L ++E G    ++  +++    + I +    VS     
Sbjct: 520 K------------AHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGVSEKRTT 567

Query: 312 ----------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349
                                   PE   RF   +  + L K D   I     + L+ + 
Sbjct: 568 VGFNREEQVMGEQSMIDSLSGYFKPEFLNRFDSIIEFQPLEKEDLVKIA----ALLLKEL 623

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ----TVMERVLEDISFSAS 405
           +E +K + + L+ ++++ + +A++  +        GAR L+    T +E  + D+     
Sbjct: 624 EETLKEQNMTLEVSDEAKEKIAEIGYH-----PAFGARPLRRTIQTAVEDQMTDLLLEEE 678

Query: 406 DLQEKTVVIDAEYVRLH 422
            ++   V+++ + +R+ 
Sbjct: 679 HIKGFAVIVENDEIRVK 695


>gi|24158791|pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
           Regulator Of Clpap Protease: Structural Basis Of
           Differences In Function Of The Two Aaa+ Atpase Domains
 gi|52695362|pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|24987364|pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
 gi|24987365|pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
           From Thermus Thermophilus
 gi|24987366|pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
           Thermus Thermophilus
          Length = 254

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F
Sbjct: 31  IVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 86  VEM-FVGVGAARV-RDLFETAKRH 107


>gi|116621451|ref|YP_823607.1| ATPase [Candidatus Solibacter usitatus Ellin6076]
 gi|116224613|gb|ABJ83322.1| ATPase AAA-2 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 883

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 14  SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71
             L   +IGQ +A R VA A LRNR       A L D   P  + + +GPTGVGKT + R
Sbjct: 568 DRLKDRVIGQDEAVRLVANAILRNR-------AGLGDPQRPIGSFIFLGPTGVGKTELVR 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LA+         I+V+++++ E   V R V  
Sbjct: 621 ALAQYLFDDSKAMIRVDMSEYMEKHAVARMVGS 653


>gi|323172147|gb|EFZ57785.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli LT-68]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|306430647|emb|CBJ17070.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|333006685|gb|EGK26184.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri VA-6]
          Length = 747

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 437 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 491

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 492 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 547


>gi|322373965|ref|ZP_08048499.1| cell division protein FtsH [Streptococcus sp. C150]
 gi|321276931|gb|EFX54002.1| cell division protein FtsH [Streptococcus sp. C150]
          Length = 651

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 194 LKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM- 247

Query: 94  YVGRNVEQIIRDLVDVAINIVRE 116
           +VG    ++ R L + A    R 
Sbjct: 248 FVGVGASRV-RSLFEDAKKAERA 269


>gi|320583004|gb|EFW97220.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Pichia angusta DL-1]
          Length = 668

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 22/129 (17%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A+     V   L++  +   L   L     PK +LL GP G GKT ++R  A 
Sbjct: 203 DVCGVDEARAELEEVVEFLKDPSKFTGLGGQL-----PKGVLLTGPPGTGKTLLARATAG 257

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  ++F E+ YVG   +++ R+L   A            R  A +  +E  L
Sbjct: 258 EAGVPFFFMSGSEFDEL-YVGVGAKRV-RELFSKA----------RARAPAIVFIDE--L 303

Query: 136 DALVGKTAT 144
           DA+ GK  +
Sbjct: 304 DAIGGKRKS 312


>gi|312127146|ref|YP_003992020.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777165|gb|ADQ06651.1| ATPase AAA-2 domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 829

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|283781331|ref|YP_003372086.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
 gi|310946755|sp|D2QZ34|FTSH_PIRSD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283439784|gb|ADB18226.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068]
          Length = 700

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RD+   A
Sbjct: 253 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEM-FVGVGAARV-RDMFQQA 310


>gi|226226898|ref|YP_002761004.1| chaperone ClpB [Gemmatimonas aurantiaca T-27]
 gi|226090089|dbj|BAH38534.1| chaperone ClpB [Gemmatimonas aurantiaca T-27]
          Length = 871

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ++A RAVA A+R      +  A L+D   P  + + +GPTGVGKT  
Sbjct: 564 KLEDVLATRVVGQREAVRAVANAVR------RSRAGLQDPNRPIGSFIFLGPTGVGKTET 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++++++++ E   V R
Sbjct: 618 ARALAEFLFDDEHAMVRIDMSEYMEKHAVAR 648


>gi|226508852|ref|NP_001145329.1| hypothetical protein LOC100278654 [Zea mays]
 gi|195654707|gb|ACG46821.1| hypothetical protein [Zea mays]
          Length = 485

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 7   LKNPKKYEDLGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 60

Query: 94  YVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +VG     V  + ++    A +IV     D +
Sbjct: 61  FVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 92


>gi|194290612|ref|YP_002006519.1| ATP-dependent specificity subunit of clpa-clpp serine protease
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224447|emb|CAQ70458.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Cupriavidus taiwanensis LMG 19424]
          Length = 764

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIEALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFIMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|183980670|ref|YP_001848961.1| endopeptidase ATP binding protein (chain B) ClpB [Mycobacterium
           marinum M]
 gi|183173996|gb|ACC39106.1| endopeptidase ATP binding protein (chain B) ClpB [Mycobacterium
           marinum M]
          Length = 848

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   +IGQ+ A +AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGHRVIGQKKAVQAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|170743190|ref|YP_001771845.1| ATP-dependent chaperone ClpB [Methylobacterium sp. 4-46]
 gi|168197464|gb|ACA19411.1| ATP-dependent chaperone ClpB [Methylobacterium sp. 4-46]
          Length = 878

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ++A  AVA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 568 MEEALGRRVVGQREAVEAVATAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 622 KALASFLFDDETAMVRLDMSEYMEKHSVAR 651



 Score = 36.8 bits (84), Expect = 7.6,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 107/312 (34%), Gaps = 43/312 (13%)

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195
             L  + A        R+ +     + +     + D +  I +F   G   VG   L++ 
Sbjct: 564 KLLAMEEALGRRVVGQREAVEAVATAVRRARAGLQDPNRPIGSFMFLGPTGVGKTELTKA 623

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---------DMDTVHRDSIQMVENYGI 246
            +  +       +R+ + +    + +    RLI         +      ++++    Y +
Sbjct: 624 LASFLFDDETAMVRLDMSE---YMEKHSVARLIGAPPGYVGYEEGGALTEAVRR-RPYQV 679

Query: 247 VFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY-----GSIN 292
           V  DE +K         +   D G         V      LV  S++  +Y        +
Sbjct: 680 VLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLLVMTSNLGAEYLVNQPEGQD 739

Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352
           TD +                 PE   R    +    L +++   I+       + + ++L
Sbjct: 740 TDAVRDEVMAVVRAH----FRPEFLNRVDEIILFHRLKRAEMGAIV----DIQLGRLQKL 791

Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412
           +    I LD   D+   LA+   +        GAR L+ V+++ ++D    A  +   +V
Sbjct: 792 LDERKITLDVEPDARAWLAERGYD-----PAYGARPLKRVIQKSVQDPM--AEQILAGSV 844

Query: 413 VIDAEYVRLHIG 424
             D E VR+ +G
Sbjct: 845 H-DGEAVRVRLG 855


>gi|147678457|ref|YP_001212672.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274554|dbj|BAF60303.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 871

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L   ++GQ  A +AV+ A+R      +  A + D   P    + +GPTGVGKT +
Sbjct: 564 KMEELLKERVVGQDRAVKAVSDAIR------RARAGVADPNRPMGSFIFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          ++ +++++ E   V R
Sbjct: 618 ARALAHFLFNDERAMLRFDMSEYMEKHAVSR 648


>gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 638

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK     V   L+   R   + A +     P+ +LLVGP G GKT +++ +A
Sbjct: 181 DDVAGVSEAKQDLEEVVTFLKKPERFTSVGAQI-----PRGVLLVGPPGTGKTLLAKAIA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 236 GEAGVPFFSLSGSEFVEM-FVGVGASRV-RDLFKRA 269


>gi|114763550|ref|ZP_01442955.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pelagibaca
           bermudensis HTCC2601]
 gi|114543830|gb|EAU46842.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius
           sp. HTCC2601]
          Length = 871

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   ++GQ  A RAVA A+R      +  A L DE  P  + L +GPTGVGKT +++ +A
Sbjct: 564 LHNRVVGQNQAVRAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELTKAVA 617

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 618 EFLFDDDNAMVRIDMSEFMEKHSVAR 643


>gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032]
          Length = 860

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 204 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 260


>gi|24378545|ref|NP_720500.1| putative cell division protein FtsH [Streptococcus mutans UA159]
 gi|24376393|gb|AAN57806.1|AE014853_13 putative cell division protein FtsH [Streptococcus mutans UA159]
          Length = 656

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + I + +  +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 187 DVAGAEEEKQEL-IEVVDFLKDPKRYNALGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 244

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116
            PF  +  + F E+ +VG    ++ R L + A    R 
Sbjct: 245 VPFFSISGSDFVEM-FVGVGASRV-RSLFEDAKKAERA 280


>gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Corynebacterium glutamicum ATCC 13032]
 gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 853

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 253


>gi|126442131|ref|YP_001059258.1| ATPase AAA-2 [Burkholderia pseudomallei 668]
 gi|167719228|ref|ZP_02402464.1| ATPase AAA-2 [Burkholderia pseudomallei DM98]
 gi|167893910|ref|ZP_02481312.1| ATPase AAA-2 [Burkholderia pseudomallei 7894]
 gi|167918626|ref|ZP_02505717.1| ATPase AAA-2 [Burkholderia pseudomallei BCC215]
 gi|126221624|gb|ABN85130.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 668]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|76812125|ref|YP_333784.1| ClpB heat-shock protein [Burkholderia pseudomallei 1710b]
 gi|167738226|ref|ZP_02411000.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           pseudomallei 14]
 gi|167902362|ref|ZP_02489567.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910600|ref|ZP_02497691.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           pseudomallei 112]
 gi|254261495|ref|ZP_04952549.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1710a]
 gi|254297398|ref|ZP_04964851.1| clpB protein [Burkholderia pseudomallei 406e]
 gi|76581578|gb|ABA51053.1| ClpB heat-shock protein [Burkholderia pseudomallei 1710b]
 gi|157807919|gb|EDO85089.1| clpB protein [Burkholderia pseudomallei 406e]
 gi|254220184|gb|EET09568.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1710a]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|126453997|ref|YP_001066525.1| clpB protein [Burkholderia pseudomallei 1106a]
 gi|167815415|ref|ZP_02447095.1| ClpB heat-shock protein [Burkholderia pseudomallei 91]
 gi|167823825|ref|ZP_02455296.1| ClpB heat-shock protein [Burkholderia pseudomallei 9]
 gi|167845366|ref|ZP_02470874.1| ClpB heat-shock protein [Burkholderia pseudomallei B7210]
 gi|217421888|ref|ZP_03453392.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 576]
 gi|226197488|ref|ZP_03793065.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei Pakistan 9]
 gi|237812581|ref|YP_002897032.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei MSHR346]
 gi|242314296|ref|ZP_04813312.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1106b]
 gi|254179519|ref|ZP_04886118.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1655]
 gi|254197201|ref|ZP_04903623.1| clpB protein [Burkholderia pseudomallei S13]
 gi|126227639|gb|ABN91179.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1106a]
 gi|169653942|gb|EDS86635.1| clpB protein [Burkholderia pseudomallei S13]
 gi|184210059|gb|EDU07102.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1655]
 gi|217395630|gb|EEC35648.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 576]
 gi|225930867|gb|EEH26877.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei Pakistan 9]
 gi|237506453|gb|ACQ98771.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei MSHR346]
 gi|242137535|gb|EES23937.1| ATP-dependent chaperone ClpB [Burkholderia pseudomallei 1106b]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|331003929|ref|ZP_08327418.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411949|gb|EGG91349.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 608

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK I+LVGP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +  D  
Sbjct: 199 RIPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASRVRDLFEDAK 257

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 258 KNAPCIIFIDEIDAV 272


>gi|296535581|ref|ZP_06897762.1| ATPase with chaperone activity, ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296264097|gb|EFH10541.1| ATPase with chaperone activity, ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 938

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ++A  AV+ A+     R                L +GPTGVGKT ++
Sbjct: 617 KMEERLHQRVIGQEEAISAVSDAV-----RLARAGLREGSKPVATFLFLGPTGVGKTELA 671

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +        ++++++++ E   V R V
Sbjct: 672 KALAEVVYGDENALLRIDMSEYMERHAVARLV 703


>gi|293409261|ref|ZP_06652837.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B354]
 gi|291469729|gb|EFF12213.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B354]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|227884152|ref|ZP_04001957.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           83972]
 gi|227838904|gb|EEJ49370.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           83972]
 gi|307552725|gb|ADN45500.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ABU 83972]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|224134250|ref|XP_002321773.1| predicted protein [Populus trichocarpa]
 gi|222868769|gb|EEF05900.1| predicted protein [Populus trichocarpa]
          Length = 939

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  EL + +IGQ +A  A++ A+    +R ++     D      +L  GPTGVGKT ++
Sbjct: 616 DLEEELRKRVIGQDEAIAAISRAV----KRSRVGLKDPD-RPIAAMLFCGPTGVGKTELT 670

Query: 71  RRLARL---AGAPFIKVEVTKFTEIGYVGR 97
           + LAR    + +  ++++++++ E   V +
Sbjct: 671 KALARSYFGSESAMLRLDMSEYMERHTVSK 700


>gi|194763939|ref|XP_001964089.1| GF21370 [Drosophila ananassae]
 gi|190619014|gb|EDV34538.1| GF21370 [Drosophila ananassae]
          Length = 823

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 341 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 395

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 396 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 447


>gi|218960671|ref|YP_001740446.1| protein disaggregation chaperone [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729328|emb|CAO80239.1| protein disaggregation chaperone [Candidatus Cloacamonas
           acidaminovorans]
          Length = 862

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+ + L + ++GQ++  +A+A A+R      +  + L DE  P  + + +GPTGVGKT +
Sbjct: 566 ELENVLAQRVVGQEEGIKALANAIR------RSRSGLSDENRPIGSFIFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I++++++F E   V R
Sbjct: 620 AKTLASYLFDTEKALIRLDMSEFMEKHSVAR 650


>gi|117623060|ref|YP_851973.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           APEC O1]
 gi|115512184|gb|ABJ00259.1| ATP-dependent clp protease ATP-binding subunit ClpA [Escherichia
           coli APEC O1]
          Length = 760

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 450 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 504

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 505 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 560


>gi|3218522|emb|CAA19646.1| EG:100G10.7 [Drosophila melanogaster]
          Length = 819

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 339 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 393

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 394 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 445


>gi|145549|gb|AAA23583.1| ClpA protein [Escherichia coli]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRVIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|82777595|ref|YP_403944.1| ATP-dependent Clp protease ATP-binding subunit [Shigella
           dysenteriae Sd197]
 gi|81241743|gb|ABB62453.1| ATP-binding component of serine protease [Shigella dysenteriae
           Sd197]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|237707136|ref|ZP_04537617.1| ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           sp. 3_2_53FAA]
 gi|331646150|ref|ZP_08347253.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli M605]
 gi|331651901|ref|ZP_08352920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli M718]
 gi|331676670|ref|ZP_08377366.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H591]
 gi|332282223|ref|ZP_08394636.1| ATP-dependent clp protease ATP-binding subunit clpA [Shigella sp.
           D9]
 gi|26107308|gb|AAN79491.1|AE016758_95 ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           coli CFT073]
 gi|91071493|gb|ABE06374.1| ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           coli UTI89]
 gi|226898346|gb|EEH84605.1| ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           sp. 3_2_53FAA]
 gi|331044902|gb|EGI17029.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli M605]
 gi|331050179|gb|EGI22237.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli M718]
 gi|331075359|gb|EGI46657.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H591]
 gi|332104575|gb|EGJ07921.1| ATP-dependent clp protease ATP-binding subunit clpA [Shigella sp.
           D9]
          Length = 763

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 453 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 563


>gi|110641083|ref|YP_668813.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           536]
 gi|191172147|ref|ZP_03033691.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli F11]
 gi|300991761|ref|ZP_07179624.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 200-1]
 gi|110342675|gb|ABG68912.1| ATP-binding component of serine protease [Escherichia coli 536]
 gi|190907674|gb|EDV67269.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli F11]
 gi|300305515|gb|EFJ60035.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 200-1]
 gi|324013008|gb|EGB82227.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 60-1]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|15800640|ref|NP_286654.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15830222|ref|NP_308995.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128850|ref|NP_415403.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K-12
           substr. MG1655]
 gi|74311441|ref|YP_309860.1| ATP-dependent Clp protease ATP-binding subunit [Shigella sonnei
           Ss046]
 gi|89107733|ref|AP_001513.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K-12
           substr. W3110]
 gi|157159066|ref|YP_001462079.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           E24377A]
 gi|157160405|ref|YP_001457723.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           HS]
 gi|161486264|ref|NP_752948.2| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           CFT073]
 gi|162138461|ref|YP_539905.2| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           UTI89]
 gi|168752463|ref|ZP_02777485.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4113]
 gi|168759051|ref|ZP_02784058.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4401]
 gi|168765316|ref|ZP_02790323.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4501]
 gi|168769875|ref|ZP_02794882.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4486]
 gi|168777870|ref|ZP_02802877.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4196]
 gi|168783793|ref|ZP_02808800.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4076]
 gi|168789134|ref|ZP_02814141.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC869]
 gi|168802713|ref|ZP_02827720.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC508]
 gi|170080541|ref|YP_001729861.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679955|ref|YP_001744325.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SMS-3-5]
 gi|191167608|ref|ZP_03029419.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B7A]
 gi|193064639|ref|ZP_03045718.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E22]
 gi|193071766|ref|ZP_03052662.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E110019]
 gi|194428377|ref|ZP_03060918.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B171]
 gi|195939545|ref|ZP_03084927.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208814807|ref|ZP_03255986.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822722|ref|ZP_03263041.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209399660|ref|YP_002269556.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209918131|ref|YP_002292215.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE11]
 gi|215486013|ref|YP_002328444.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326275|ref|ZP_03442359.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218553468|ref|YP_002386381.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           IAI1]
 gi|218557786|ref|YP_002390699.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           S88]
 gi|218688664|ref|YP_002396876.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ED1a]
 gi|218694356|ref|YP_002402023.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           55989]
 gi|218700602|ref|YP_002408231.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           IAI39]
 gi|218704311|ref|YP_002411830.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           UMN026]
 gi|238900141|ref|YP_002925937.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli BW2952]
 gi|254792083|ref|YP_003076920.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020997|ref|ZP_05434862.1| ATP-dependent Clp protease ATP-binding subunit [Shigella sp. D9]
 gi|256023491|ref|ZP_05437356.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia sp.
           4_1_40B]
 gi|260843133|ref|YP_003220911.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O103:H2 str. 12009]
 gi|260854174|ref|YP_003228065.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O26:H11 str. 11368]
 gi|261225538|ref|ZP_05939819.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258493|ref|ZP_05951026.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281886|ref|YP_003498704.1| ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           coli O55:H7 str. CB9615]
 gi|293404190|ref|ZP_06648184.1| ClpA [Escherichia coli FVEC1412]
 gi|293414165|ref|ZP_06656814.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B185]
 gi|293433180|ref|ZP_06661608.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B088]
 gi|298379971|ref|ZP_06989576.1| ClpA [Escherichia coli FVEC1302]
 gi|300817016|ref|ZP_07097235.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 107-1]
 gi|300823620|ref|ZP_07103747.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 119-7]
 gi|300895695|ref|ZP_07114291.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 198-1]
 gi|300902418|ref|ZP_07120400.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 84-1]
 gi|300921086|ref|ZP_07137470.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 115-1]
 gi|300922551|ref|ZP_07138652.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 182-1]
 gi|300935724|ref|ZP_07150692.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 21-1]
 gi|300950110|ref|ZP_07164056.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 116-1]
 gi|300954435|ref|ZP_07166887.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 175-1]
 gi|300978554|ref|ZP_07174307.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 45-1]
 gi|301020522|ref|ZP_07184606.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 69-1]
 gi|301024395|ref|ZP_07188082.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 196-1]
 gi|301051188|ref|ZP_07198018.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 185-1]
 gi|301305344|ref|ZP_07211439.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 124-1]
 gi|301328604|ref|ZP_07221665.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 78-1]
 gi|301646326|ref|ZP_07246214.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 146-1]
 gi|306812668|ref|ZP_07446861.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           NC101]
 gi|309784000|ref|ZP_07678644.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae 1617]
 gi|309795321|ref|ZP_07689739.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 145-7]
 gi|312969049|ref|ZP_07783256.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 2362-75]
 gi|312971009|ref|ZP_07785188.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 1827-70]
 gi|331656954|ref|ZP_08357916.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA206]
 gi|331662296|ref|ZP_08363219.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA143]
 gi|331667256|ref|ZP_08368121.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA271]
 gi|331682391|ref|ZP_08383010.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H299]
 gi|78099955|sp|P0ABI1|CLPA_ECO57 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpA
 gi|78099956|sp|P0ABI0|CLPA_ECOL6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpA
 gi|78099957|sp|P0ABH9|CLPA_ECOLI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpA
 gi|12513912|gb|AAG55264.1|AE005269_8 ATP-binding component of serine protease [Escherichia coli O157:H7
           str. EDL933]
 gi|1651401|dbj|BAA35601.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K12
           substr. W3110]
 gi|1787109|gb|AAC73969.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360427|dbj|BAB34391.1| ATP-binding component of serine protease [Escherichia coli O157:H7
           str. Sakai]
 gi|73854918|gb|AAZ87625.1| ATP-binding component of serine protease [Shigella sonnei Ss046]
 gi|157066085|gb|ABV05340.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli HS]
 gi|157081096|gb|ABV20804.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E24377A]
 gi|169888376|gb|ACB02083.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517673|gb|ACB15851.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli SMS-3-5]
 gi|187766989|gb|EDU30833.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4196]
 gi|188013695|gb|EDU51817.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4113]
 gi|188998897|gb|EDU67883.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4076]
 gi|189354284|gb|EDU72703.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4401]
 gi|189361173|gb|EDU79592.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4486]
 gi|189364899|gb|EDU83315.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4501]
 gi|189371192|gb|EDU89608.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC869]
 gi|189375358|gb|EDU93774.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC508]
 gi|190902369|gb|EDV62107.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B7A]
 gi|192927696|gb|EDV82311.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E22]
 gi|192954923|gb|EDV85430.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E110019]
 gi|194413592|gb|EDX29873.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B171]
 gi|208731455|gb|EDZ80143.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208738207|gb|EDZ85890.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209161060|gb|ACI38493.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209775118|gb|ACI85871.1| ATP-binding component of serine protease [Escherichia coli]
 gi|209775120|gb|ACI85872.1| ATP-binding component of serine protease [Escherichia coli]
 gi|209775122|gb|ACI85873.1| ATP-binding component of serine protease [Escherichia coli]
 gi|209775124|gb|ACI85874.1| ATP-binding component of serine protease [Escherichia coli]
 gi|209775126|gb|ACI85875.1| ATP-binding component of serine protease [Escherichia coli]
 gi|209911390|dbj|BAG76464.1| ATP-dependent clp protease ATP-binding subunit ClpA [Escherichia
           coli SE11]
 gi|215264085|emb|CAS08427.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli O127:H6
           str. E2348/69]
 gi|217322496|gb|EEC30920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218351088|emb|CAU96792.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli 55989]
 gi|218360236|emb|CAQ97786.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli IAI1]
 gi|218364555|emb|CAR02239.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli S88]
 gi|218370588|emb|CAR18395.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli IAI39]
 gi|218426228|emb|CAR07053.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli ED1a]
 gi|218431408|emb|CAR12286.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli UMN026]
 gi|222032611|emb|CAP75350.1| ATP-dependent Clp protease ATP-binding subunit clpA [Escherichia
           coli LF82]
 gi|238860035|gb|ACR62033.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli BW2952]
 gi|254591483|gb|ACT70844.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli O157:H7
           str. TW14359]
 gi|257752823|dbj|BAI24325.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O26:H11 str. 11368]
 gi|257758280|dbj|BAI29777.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O103:H2 str. 12009]
 gi|260449971|gb|ACX40393.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Escherichia
           coli DH1]
 gi|281178017|dbj|BAI54347.1| ATP-dependent clp protease ATP-binding subunit ClpA [Escherichia
           coli SE15]
 gi|284920736|emb|CBG33799.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           042]
 gi|290761759|gb|ADD55720.1| ATP-dependent clp protease ATP-binding subunit clpA [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323999|gb|EFE63421.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B088]
 gi|291428776|gb|EFF01801.1| ClpA [Escherichia coli FVEC1412]
 gi|291434223|gb|EFF07196.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli B185]
 gi|298279669|gb|EFI21177.1| ClpA [Escherichia coli FVEC1302]
 gi|299880402|gb|EFI88613.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 196-1]
 gi|300297209|gb|EFJ53594.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 185-1]
 gi|300318585|gb|EFJ68369.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 175-1]
 gi|300360364|gb|EFJ76234.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 198-1]
 gi|300398655|gb|EFJ82193.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 69-1]
 gi|300405450|gb|EFJ88988.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 84-1]
 gi|300409633|gb|EFJ93171.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 45-1]
 gi|300411937|gb|EFJ95247.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 115-1]
 gi|300421097|gb|EFK04408.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 182-1]
 gi|300450525|gb|EFK14145.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 116-1]
 gi|300459087|gb|EFK22580.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 21-1]
 gi|300523820|gb|EFK44889.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 119-7]
 gi|300530368|gb|EFK51430.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 107-1]
 gi|300839362|gb|EFK67122.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 124-1]
 gi|300844996|gb|EFK72756.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 78-1]
 gi|301075429|gb|EFK90235.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 146-1]
 gi|305853431|gb|EFM53870.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           NC101]
 gi|307627692|gb|ADN71996.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           UM146]
 gi|308120971|gb|EFO58233.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 145-7]
 gi|308928143|gb|EFP73606.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae 1617]
 gi|310336770|gb|EFQ01937.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 1827-70]
 gi|312286451|gb|EFR14364.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 2362-75]
 gi|312945400|gb|ADR26227.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315135531|dbj|BAJ42690.1| ATP-dependent clp protease ATP-binding subunit ClpA [Escherichia
           coli DH1]
 gi|315257920|gb|EFU37888.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 85-1]
 gi|315287284|gb|EFU46695.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 110-3]
 gi|315296658|gb|EFU55953.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 16-3]
 gi|315619194|gb|EFU99773.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 3431]
 gi|320175323|gb|EFW50429.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae CDC 74-1112]
 gi|320180600|gb|EFW55529.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           boydii ATCC 9905]
 gi|320183179|gb|EFW58037.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri CDC 796-83]
 gi|320192632|gb|EFW67273.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. EC1212]
 gi|320196623|gb|EFW71246.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli WV_060327]
 gi|320637753|gb|EFX07545.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320642876|gb|EFX12077.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320648333|gb|EFX16988.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320659795|gb|EFX27351.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664265|gb|EFX31416.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155744|gb|EFZ41913.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli EPECa14]
 gi|323159507|gb|EFZ45487.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E128010]
 gi|323165819|gb|EFZ51605.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           sonnei 53G]
 gi|323175496|gb|EFZ61091.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 1180]
 gi|323190704|gb|EFZ75973.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli RN587/1]
 gi|323942799|gb|EGB38964.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E482]
 gi|323947160|gb|EGB43170.1| ATP-dependent Clp protease ATP-binding ClpA [Escherichia coli H120]
 gi|323953414|gb|EGB49280.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H252]
 gi|323958184|gb|EGB53893.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H263]
 gi|323969618|gb|EGB64905.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA007]
 gi|324009832|gb|EGB79051.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 57-2]
 gi|324019028|gb|EGB88247.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 117-3]
 gi|324116096|gb|EGC10020.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli E1167]
 gi|326338223|gb|EGD62052.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. 1125]
 gi|326346200|gb|EGD69938.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli O157:H7 str. 1044]
 gi|330910664|gb|EGH39174.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli AA86]
 gi|331055202|gb|EGI27211.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA206]
 gi|331060718|gb|EGI32682.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA143]
 gi|331065612|gb|EGI37505.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA271]
 gi|331080022|gb|EGI51201.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H299]
 gi|332088858|gb|EGI93970.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           boydii 5216-82]
 gi|332342270|gb|AEE55604.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli UMNK88]
 gi|333008806|gb|EGK28266.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri K-272]
 gi|333020113|gb|EGK39383.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           flexneri K-227]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|331672425|ref|ZP_08373215.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA280]
 gi|331070331|gb|EGI41696.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli TA280]
          Length = 763

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 453 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 563


>gi|323161335|gb|EFZ47243.1| chaperone protein clpB domain protein [Escherichia coli E128010]
          Length = 353

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 58  MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 111

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 112 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 143


>gi|320654171|gb|EFX22239.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|313635095|gb|EFS01443.1| negative regulator of genetic competence ClpC/MecB [Listeria
           seeligeri FSL N1-067]
          Length = 619

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A +AV++A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEKLLHERVIGQDAAVKAVSLAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          I+++++++ E            GYVG
Sbjct: 555 RALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVG 594


>gi|306826516|ref|ZP_07459826.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           pyogenes ATCC 10782]
 gi|304431303|gb|EFM34302.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           pyogenes ATCC 10782]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  AV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAVSRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|156937784|ref|YP_001435580.1| ATPase [Ignicoccus hospitalis KIN4/I]
 gi|156566768|gb|ABU82173.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 366

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             ++G +DAKRA+  A+    +R     DL     P+ ILL GP G GKT ++  +A   
Sbjct: 97  DDVVGLEDAKRAIEEAIVFPAKR----PDLFPLGWPRGILLFGPPGCGKTLLAAAVANEL 152

Query: 78  GAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVA 110
            A FI V+         G   +NV  +     +VA
Sbjct: 153 DAEFIYVDAATIMSKWLGQAEKNVASLFNKAREVA 187


>gi|134277175|ref|ZP_01763890.1| ATP-dependent chaperone protein ClpB [Burkholderia pseudomallei
           305]
 gi|134250825|gb|EBA50904.1| ATP-dependent chaperone protein ClpB [Burkholderia pseudomallei
           305]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|156717542|ref|NP_001096311.1| fidgetin-like protein 1 [Xenopus (Silurana) tropicalis]
 gi|158513822|sp|A4IHT0|FIGL1_XENTR RecName: Full=Fidgetin-like protein 1
 gi|134024394|gb|AAI35672.1| LOC100124890 protein [Xenopus (Silurana) tropicalis]
          Length = 656

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 383 DDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 440

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 441 GATFFSISASSLT-SKWVGEG-EKMVRALFTVARCHQ 475


>gi|82543369|ref|YP_407316.1| ATP-dependent Clp protease ATP-binding subunit [Shigella boydii
           Sb227]
 gi|81244780|gb|ABB65488.1| ATP-binding component of serine protease [Shigella boydii Sb227]
 gi|332097056|gb|EGJ02039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           boydii 3594-74]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|53719118|ref|YP_108104.1| ClpB heat-shock protein [Burkholderia pseudomallei K96243]
 gi|254189090|ref|ZP_04895601.1| clpB protein [Burkholderia pseudomallei Pasteur 52237]
 gi|52209532|emb|CAH35485.1| ClpB heat-shock protein [Burkholderia pseudomallei K96243]
 gi|157936769|gb|EDO92439.1| clpB protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 876

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 579 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 632

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 633 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 662


>gi|194438686|ref|ZP_03070773.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 101-1]
 gi|253774088|ref|YP_003036919.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260867055|ref|YP_003233457.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O111:H- str. 11128]
 gi|300928421|ref|ZP_07143954.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 187-1]
 gi|194422318|gb|EDX38318.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 101-1]
 gi|242376697|emb|CAQ31410.1| clpA, subunit of ClpA ATP-dependent protease specificity component
           and chaperone, ClpAP and ClpAXP [Escherichia coli
           BL21(DE3)]
 gi|253325132|gb|ACT29734.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|257763411|dbj|BAI34906.1| ATPase and specificity subunit ClpA of ClpA-ClpP ATP-dependent
           serine protease, chaperone activity [Escherichia coli
           O111:H- str. 11128]
 gi|300463584|gb|EFK27077.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli MS 187-1]
 gi|323962995|gb|EGB58567.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H489]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|326530356|dbj|BAJ97604.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
           PK +LLVG  G GKT ++R +A  AG PF     + F E+ YVG    ++ R+L   A N
Sbjct: 22  PKGVLLVGQPGTGKTMLARSMAGEAGVPFFSCSGSDFEEM-YVGVGARRV-RELFSAARN 79

Query: 113 I 113
            
Sbjct: 80  Q 80


>gi|311896812|dbj|BAJ29220.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
           [Kitasatospora setae KM-6054]
          Length = 838

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 508 MEDELHKRVIGQEDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 562 KTLAEFLFGDEDALIALDMSEFSEKHTVSR 591


>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
 gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
          Length = 810

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 25/244 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G +DA + +   +    +  ++   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 182 EDIGGLKDAIQKIREMIELPLKHPEVFEKLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 240

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN------AE 131
            A FI +   +     Y G + E++     +   N       DE+   A          E
Sbjct: 241 NAHFIAINGPEIM-SKYYGESEERLREVFKESEENAPSIIFIDEIDAIAPKRGEVTGEVE 299

Query: 132 ERILDALVGKTATSNTR------------EVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++  L+       +R            +     LR     D+EI+I V D        
Sbjct: 300 KRVVAQLLTLMDGLKSRGKVIVIGATNRPDALDPALRRPGRFDREIEIGVPDKQGRKEIL 359

Query: 180 DIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I   G  +      E   KV+   ++             L + E   L D + + R +I
Sbjct: 360 QIHTRGMPIEPDFRKEEVKKVLKELKQDDR--FRDAAERALYKIED--LADKEEIIRRAI 415

Query: 239 QMVE 242
           + ++
Sbjct: 416 RDID 419



 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++ K+ +  A+    +  +    +     PK ILL GP G GKT +++ +A  +
Sbjct: 518 NDIGGLEEVKQQLREAVEWPLKYPEAFMAMGI-NPPKGILLYGPPGTGKTLLAKAVATES 576

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
            A FI +   +     +VG    N+ +I R     A  ++     D +  +   +   R+
Sbjct: 577 EANFIGIRGPEVL-SKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGSDVN-RV 634

Query: 135 LDAL 138
            D L
Sbjct: 635 TDRL 638


>gi|219363683|ref|NP_001136914.1| hypothetical protein LOC100217072 [Zea mays]
 gi|194697596|gb|ACF82882.1| unknown [Zea mays]
          Length = 360

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 37  LEDVLHKRVIGQDIAVKSVANAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELG 90

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++++ E   V R V
Sbjct: 91  KTLAEFLFNTENALIRIDMSEYMEKHAVSRLV 122


>gi|163750818|ref|ZP_02158053.1| cell division protein FtsH [Shewanella benthica KT99]
 gi|161329513|gb|EDQ00507.1| cell division protein FtsH [Shewanella benthica KT99]
          Length = 654

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + +   L+   R ++L   +     P  ILLVGP G GKT +++ ++ 
Sbjct: 155 DVAGCDEAKEDVKELVDYLKEPTRFEKLGGRI-----PTGILLVGPPGTGKTLLAKAISG 209

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 210 EAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKSAPCIIFIDEIDAV 258


>gi|146096646|ref|XP_001467878.1| ATP-dependent zinc metallopeptidase [Leishmania infantum JPCM5]
          Length = 534

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 35/210 (16%)

Query: 1   MKLTFNFSPR----EIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMP 53
           M +     P+    E+     + +IG  +AK  +      L+   +  +L A L     P
Sbjct: 6   MDMMNPMKPKNFRTEVKGTTFKDVIGIPEAKEELKQYVDFLKEPAKFTRLGARL-----P 60

Query: 54  KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAI 111
           K  LL G  G GKT ++R +A  A  PF       F EI  G   + V ++  +    A 
Sbjct: 61  KGCLLTGQPGTGKTLLARAVAGEANTPFFSCSGADFIEIFGGSGPKRVRELFEEAKKAAP 120

Query: 112 NIVRESRRDEVREQ-------------ASINAEERILDALVGKTATS--------NTREV 150
            +V     D +  +                    ++L  L G T+          N  E 
Sbjct: 121 CVVFIDEIDAIGSRNQGGRSMGGGGSSEENRTINQLLAELDGLTSKEAIVVIAATNYPEA 180

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFD 180
             K L      D+++ I + D  +    F+
Sbjct: 181 IDKALLREGRFDRKVTIPMPDHKARCELFE 210


>gi|262394727|ref|YP_003286581.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio sp.
           Ex25]
 gi|262338321|gb|ACY52116.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio sp.
           Ex25]
          Length = 755

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 446 SDKDILKNLDSKMKMLVFGQDNAIDALSEAIK-----LTRAGLGVDNKPVGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 501 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 560

Query: 113 I 113
            
Sbjct: 561 S 561


>gi|24639391|ref|NP_570017.1| CG2658, isoform A [Drosophila melanogaster]
 gi|7290347|gb|AAF45806.1| CG2658, isoform A [Drosophila melanogaster]
          Length = 819

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 339 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 393

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 394 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 445


>gi|94311824|ref|YP_585034.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Cupriavidus
           metallidurans CH34]
 gi|93355676|gb|ABF09765.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Cupriavidus metallidurans
           CH34]
          Length = 765

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIEALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFIMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|307311730|ref|ZP_07591370.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Escherichia
           coli W]
 gi|306908285|gb|EFN38784.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Escherichia
           coli W]
 gi|315060168|gb|ADT74495.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli W]
 gi|320202277|gb|EFW76848.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli EC4100B]
 gi|323185153|gb|EFZ70518.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli 1357]
 gi|323379275|gb|ADX51543.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Escherichia
           coli KO11]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|254160997|ref|YP_003044105.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli B str.
           REL606]
 gi|253972898|gb|ACT38569.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli B str.
           REL606]
 gi|253977112|gb|ACT42782.1| ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine
           protease, chaperone activity [Escherichia coli
           BL21(DE3)]
          Length = 710

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 400 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 454

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 455 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 510


>gi|218245816|ref|YP_002371187.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 8801]
 gi|257058862|ref|YP_003136750.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 8802]
 gi|218166294|gb|ACK65031.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 8801]
 gi|256589028|gb|ACU99914.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 8802]
          Length = 872

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ++A  AV+ A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 567 QLEDELHERVIGQEEAVTAVSEAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA+         ++++++++ E   V R
Sbjct: 621 AKALAKNLFDTEEALVRIDMSEYMEKHAVSR 651


>gi|254228991|ref|ZP_04922412.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio sp.
           Ex25]
 gi|151938459|gb|EDN57296.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio sp.
           Ex25]
          Length = 779

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 470 SDKDILKNLDSKMKMLVFGQDNAIDALSEAIK-----LTRAGLGVDNKPVGSFLFAGPTG 524

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 525 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 584

Query: 113 I 113
            
Sbjct: 585 S 585


>gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R]
 gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 853

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 253


>gi|25009667|gb|AAN71010.1| AT01057p [Drosophila melanogaster]
 gi|25009874|gb|AAN71106.1| AT25963p [Drosophila melanogaster]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|83719137|ref|YP_442726.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis E264]
 gi|167581671|ref|ZP_02374545.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis TXDOH]
 gi|167619788|ref|ZP_02388419.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis Bt4]
 gi|257138938|ref|ZP_05587200.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis E264]
 gi|83652962|gb|ABC37025.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis E264]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
 gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
          Length = 620

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + R   
Sbjct: 189 RIPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASRVRDLFRKAK 247

Query: 108 DVAINIVRESRRDEV 122
           + +  IV     D V
Sbjct: 248 EKSPCIVFIDEIDAV 262


>gi|260897465|ref|ZP_05905961.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308089531|gb|EFO39226.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus Peru-466]
          Length = 508

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 199 SDKDILKNLDGKMKMLVFGQDNAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 253

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 254 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 313

Query: 113 I 113
            
Sbjct: 314 S 314


>gi|256846175|ref|ZP_05551633.1| M41 family endopeptidase FtsH [Fusobacterium sp. 3_1_36A2]
 gi|256719734|gb|EEU33289.1| M41 family endopeptidase FtsH [Fusobacterium sp. 3_1_36A2]
          Length = 707

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 267 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGEPGTGKTLLAKAVAG 321

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 322 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 373


>gi|77163807|ref|YP_342332.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|254436287|ref|ZP_05049794.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|123730722|sp|Q3JEE4|FTSH_NITOC RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|76882121|gb|ABA56802.1| Peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|207089398|gb|EDZ66670.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 639

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 101/267 (37%), Gaps = 34/267 (12%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AKR +   +        + P   +     +PK ILLVG  G GKT ++R +A
Sbjct: 181 EDVAGVENAKRDLREIVDY-----LKEPGQFKAVGAKIPKGILLVGRPGTGKTLLARAVA 235

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQA---- 126
             AG PF  +  + F E+ +VG     V  + +   + A +I+     D V R +     
Sbjct: 236 GEAGVPFYSISGSDFIEM-FVGVGAARVRDMFKAAKEEAPSILFIDEIDSVGRARGTGLG 294

Query: 127 -----SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTS 173
                      +IL  + G  A          N  +V    L      D+++ +++ D  
Sbjct: 295 GGHDEREQTLNQILGEMDGFAAHENVVVLAATNRPDVLDPALLRPGRFDRKVVLDLPDKK 354

Query: 174 SDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD- 231
           +     ++         ++  E  ++         +   V +    L   E  + +DMD 
Sbjct: 355 ARQRVLEVHTKNVPLAADVDLERVARRTVGFSGADLANLVNEAA-LLTGRERKKEVDMDM 413

Query: 232 -TVHRDSIQMVENYGIVFLDEFDKIVA 257
             + RD I +      +  +E  K+VA
Sbjct: 414 FNLARDKIVLGAKRETILGEEEKKLVA 440


>gi|73542437|ref|YP_296957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ralstonia
           eutropha JMP134]
 gi|72119850|gb|AAZ62113.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ralstonia
           eutropha JMP134]
          Length = 765

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIEALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFIMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|326796211|ref|YP_004314031.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
 gi|326546975|gb|ADZ92195.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
          Length = 861

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A+R      +  + L D   P    L +GPTGVGKT + 
Sbjct: 564 MEDVLHESVIGQDEAVNAVSNAVR------RSRSGLADPKRPNGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+         ++V++++F E   V R
Sbjct: 618 KSLAKFLFDTEQAMVRVDMSEFMEKHSVAR 647


>gi|311112388|ref|YP_003983610.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
 gi|310943882|gb|ADP40176.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
          Length = 765

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 30/252 (11%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AGAPF  +  + F E+ +VG    ++ RDL   A 
Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASRV-RDLFKEAK 269

Query: 112 NIVRESRRDEVREQASINAEERILDA------LVGKTATSNTREVFRKKLRDGEISDKEI 165
           +             A +  +E  +DA      +          +   + L + +  D   
Sbjct: 270 SNPA----------AIVFVDE--IDAVGRRRGVGMGGGNDEREQTLNQLLVEMDGFDGNS 317

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++ V   ++     D P     G  +            + ++  + V      +     D
Sbjct: 318 NVIVIAATNRPDVLD-PALLRPGRFDRQ--IGVDAPDMKGRQRILEVHAAGKPI-----D 369

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           R +D+  V + +           ++E   + ARD+GN I      E + R +      S 
Sbjct: 370 RRVDLGQVAKRTPGFTGADLANVMNEAALLTARDNGNVIDDRAIDEAIDRVMAGPQRASR 429

Query: 284 VSTKYGSINTDH 295
           + +++    T +
Sbjct: 430 IMSEHERKVTAY 441


>gi|239929743|ref|ZP_04686696.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291438069|ref|ZP_06577459.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
 gi|291340964|gb|EFE67920.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
          Length = 841

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 101/261 (38%), Gaps = 24/261 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQDDAVKALSKAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I +++++F+E   V R        +             ++VR +  
Sbjct: 560 KALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 616 SVVLFDEVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNL 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
           G     +           ++++  V     +  R E    +D   V     Q+ +N  + 
Sbjct: 676 GFAAAGD------TKTNYERMKNKVSDELKQHFRPEFLNRVDDVVVF---PQLTQNDILR 726

Query: 248 FLD-EFDKIVARDSGNGIGVS 267
            +D   DK+  R     +G+ 
Sbjct: 727 IVDLMIDKVDERLKDRDMGIE 747


>gi|213581906|ref|ZP_03363732.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 672

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 362 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 416

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 417 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 472


>gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 838

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 105/284 (36%), Gaps = 41/284 (14%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G  DA + +   +    +  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 212 EDIGGLSDAIQKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 270

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQASI---NAE 131
            A FI +   +     Y G + E+   I +D  + A +I+     D +  +        E
Sbjct: 271 NAHFIAINGPEIMSKFY-GESEERLREIFKDAEENAPSIIFIDEIDAIAPKREEVVGEVE 329

Query: 132 ERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++  L+               A +N  +     LR     D+EI++ V D        
Sbjct: 330 KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKKGRKEIL 389

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
            I                           +++V K   EL+R E+    D + + R  I+
Sbjct: 390 QIHTRG---------------MPLEPDYDKVTVLKVLRELLRKET---FDEERLKR-LIE 430

Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283
            VE       +E  K++  +S     V    + R L  + E + 
Sbjct: 431 RVEE--AKSEEEIKKVLKSESEIYPEVRTRLIDRMLEEIAEKTH 472



 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G  + K+ +  A+    +  +    L  +  P+ +LL GP G GKT +++ +A  +
Sbjct: 547 EDIGGLDEVKQELREAVEWPLKYPKAFQRLGID-PPRGVLLYGPPGTGKTLLAKAVATES 605

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
            A FI +   +     +VG +   + +I R     A  ++     D +   A  +   R+
Sbjct: 606 EANFIGIRGPEVL-SKWVGESEKRIREIFRKARQAAPTVIFIDEIDAIAP-ARGSDMNRV 663

Query: 135 LDAL 138
            D L
Sbjct: 664 TDRL 667


>gi|167836362|ref|ZP_02463245.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Burkholderia
           thailandensis MSMB43]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAGFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|115727595|ref|XP_783032.2| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant;
           spastin) [Strongylocentrotus purpuratus]
 gi|115956139|ref|XP_001187782.1| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant;
           spastin) [Strongylocentrotus purpuratus]
          Length = 505

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + GQ+ AK+A+   +     R +L   LR+    + +LL GP G GKT +++ +A  + 
Sbjct: 286 DVAGQEAAKQALQEIVILPALRPELFTGLREP--ARGLLLFGPPGNGKTMLAKAVANESN 343

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +     T   YVG   E+++R L  VA
Sbjct: 344 ATFFNISAATLT-SKYVGEG-EKLVRALFAVA 373


>gi|12082993|gb|AAG48697.1|AF323912_1 matrix AAA protease MAP-1 [Neurospora crassa]
          Length = 928

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 431 DVAGMDEAKVEIMEFVQFLKEPERFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 485

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 486 ESQVPFFSVSGSEFVEM-FVGVGASRV-RDLFATA 518


>gi|323455708|gb|EGB11576.1| hypothetical protein AURANDRAFT_10538 [Aureococcus anophagefferens]
          Length = 574

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE---QIIRDLVD 108
            P+ +LL GP G GKT ++R  A  AG PFI    ++F E+ +VG        +  D   
Sbjct: 161 TPRGVLLEGPPGTGKTLLARACAGEAGVPFISTSGSEFVEM-FVGVGASRIRNLFGDAKK 219

Query: 109 VAINIVRESRRDEV 122
            A  I+     D +
Sbjct: 220 NAPCIIFIDEIDAI 233


>gi|309389975|gb|ADO77855.1| membrane protease FtsH catalytic subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 633

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 33/240 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK +L+VGP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +      
Sbjct: 187 VPKGVLMVGPPGTGKTLMAKAVAGEAGVPFYFISGSDFVEM-FVGVGASRVRDLFEKGKK 245

Query: 109 VAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168
            +  I+     D V  Q              G     + RE    +L       +  +  
Sbjct: 246 NSPCIIFIDELDAVGRQRGA-----------GLGGGHDEREQTLNQLLVEMDGFEPNEGI 294

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   +++  +   P     G  +   +  K    GR+K + + V+     L  D    ++
Sbjct: 295 ILMAATNRPDVLDPALLRPGRFDRQVMVDKPDRLGRQKILEIHVKD--KPLADDIDLEVL 352

Query: 229 ----------DMDTVHRDSIQMVENYGIVFL------DEFDKIVARDSGNGIGVSREGVQ 272
                     DM+ +  ++  +        +      D  D+++A  +     VS E   
Sbjct: 353 AKRTPGFTGADMENLANEAAILAARRAKKIIAMKEFDDAIDRVIAGPARKSKVVSEEEKN 412


>gi|297265754|ref|XP_002799248.1| PREDICTED: spastin-like [Macaca mulatta]
          Length = 596

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 312 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 369

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 370 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 400


>gi|291386961|ref|XP_002709835.1| PREDICTED: spastin [Oryctolagus cuniculus]
          Length = 631

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 357 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 414

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 415 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 445


>gi|195477528|ref|XP_002100234.1| GE16929 [Drosophila yakuba]
 gi|194187758|gb|EDX01342.1| GE16929 [Drosophila yakuba]
          Length = 822

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 342 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 396

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 397 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 448


>gi|144897749|emb|CAM74613.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 862

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 560 DMENRLKKRVIGQDEALVAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTEL 613

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++++++++ E   V R
Sbjct: 614 TKALAEFLFDDETAMVRMDMSEYMEKHSVAR 644


>gi|119194717|ref|XP_001247962.1| hypothetical protein CIMG_01733 [Coccidioides immitis RS]
          Length = 734

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK+A+  A+   + R  L   LR+    + +LL GP G GK
Sbjct: 436 EIVVRGDEVHWDDIAGLEIAKKALKEAVVYPFLRPDLFMGLREP--ARGMLLFGPPGTGK 493

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  T  T   + G + E+++R L  +A
Sbjct: 494 TMLARAVATESKSTFFSISATSLT-SKWHGES-EKLVRALFALA 535


>gi|27376515|ref|NP_768044.1| ATP-dependent protease ATP-binding subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|54035839|sp|Q89UL2|CLPB_BRAJA RecName: Full=Chaperone protein ClpB
 gi|27349656|dbj|BAC46669.1| ATP-dependent protease ATP-binding subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 879

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + ++GQ +A  AVA A+R      +  A L+D   P    + +GPTGVGKT +
Sbjct: 562 KMEDSLGKRVVGQAEAVHAVATAVR------RSRAGLQDPNRPMGSFMFLGPTGVGKTEL 615

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++++++++ E   V R
Sbjct: 616 TKALAEYLFNDETAMVRLDMSEYMEKHSVSR 646


>gi|332685804|ref|YP_004455578.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
 gi|332369813|dbj|BAK20769.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311]
          Length = 711

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 187 DVAGAEEEKQELVEVVEFLKDPRRFIELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 241

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RDL + A   
Sbjct: 242 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKN 277


>gi|253990326|ref|YP_003041682.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781776|emb|CAQ84939.1| atp-dependent clp protease atp-binding subunit clpa [Photorhabdus
           asymbiotica]
          Length = 760

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A  A+  A++            +D     + LL GPTGVGKT +
Sbjct: 451 KTLDDRLKMLVFGQDTAIAALTEAIK-----MSRAGLGQDNKPVGSFLLAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LAR+     ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 506 TVQLARVLNIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 560


>gi|206895288|ref|YP_002247181.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737905|gb|ACI16983.1| negative regulator of genetic competence ClpC/mecB
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 826

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A  AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 526 KLEEILHRRVVGQDEAISAVAQAIR------RARTGLKDPKRPIGSFIFLGPTGVGKTEL 579

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           ++ LA +     +  ++ +++++ E   V R +  
Sbjct: 580 AKALAEVLFGDESALVRFDMSEYMEKHTVSRLIGS 614


>gi|119775735|ref|YP_928475.1| clpB protein [Shewanella amazonensis SB2B]
 gi|119768235|gb|ABM00806.1| clpB protein [Shewanella amazonensis SB2B]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMEHALHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA+      +  +++++++F E   V R V
Sbjct: 615 CKSLAKFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|120437031|ref|YP_862717.1| cell division protease FtsH [Gramella forsetii KT0803]
 gi|117579181|emb|CAL67650.1| cell division protease FtsH [Gramella forsetii KT0803]
          Length = 686

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G + AK  V   + +  ++ +    L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 197 KDVAGLEGAKEEVQEIV-DFLKQPEKYTALGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 254

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 255 KVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 285


>gi|47459375|ref|YP_016237.1| cell division protein ftsH [Mycoplasma mobile 163K]
 gi|81614125|sp|Q6KHA4|FTSH_MYCMO RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|47458705|gb|AAT28026.1| cell division protein ftsH [Mycoplasma mobile 163K]
          Length = 707

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++ K  VA     L+N  +     A +     P+ ILL GP G GKT +++  A 
Sbjct: 207 DIAGNEEVKEEVAELVDYLKNPKKYSASGARI-----PRGILLGGPPGTGKTLLAKATAG 261

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG   +++ R+L   A
Sbjct: 262 EANVPFYFISGSNFVEL-FVGVGAKRV-RELFKEA 294


>gi|62179470|ref|YP_215887.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127103|gb|AAX64806.1| ATP-binding subunit of serine protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713940|gb|EFZ05511.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|254495433|ref|ZP_05108357.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
 gi|85819788|gb|EAQ40945.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp.
           MED152]
          Length = 657

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V      + G + AK  V      L++  +   L   +     PK  LLVGP G GKT +
Sbjct: 190 VKTTFENVAGLEGAKEEVQEIVDFLKSPEKYTSLGGKI-----PKGALLVGPPGTGKTLL 244

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 245 AKAVAGEAGVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 283


>gi|330840152|ref|XP_003292084.1| hypothetical protein DICPUDRAFT_39991 [Dictyostelium purpureum]
 gi|325077690|gb|EGC31386.1| hypothetical protein DICPUDRAFT_39991 [Dictyostelium purpureum]
          Length = 514

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK         L+N  +   + A +     P+  +LVGP G GKT I++  A
Sbjct: 46  KDVAGLGEAKVEIEEFVNFLKNPKKFHDIGAKI-----PRGAILVGPPGTGKTLIAKATA 100

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF     + F E+ +VG    ++ RDL D+A
Sbjct: 101 GEANVPFFSTSGSDFVEM-FVGVGPSRV-RDLFDLA 134


>gi|221480992|gb|EEE19406.1| ftsH protease, putative [Toxoplasma gondii GT1]
 gi|221501714|gb|EEE27478.1| ftsH protease, putative [Toxoplasma gondii VEG]
          Length = 902

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK ILL GP G GKT ++R +A  AG PF+    ++F E+ +VG    ++ R L   A
Sbjct: 364 RLPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVGVGASRL-RQLFAEA 421


>gi|242790258|ref|XP_002481526.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718114|gb|EED17534.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 842

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK+A+  A+   + R  L   LR+    + +LL GP G GKT ++R +A  +
Sbjct: 552 DDVAGLETAKKALKEAVVYPFLRPDLFMGLREP--ARGMLLFGPPGTGKTMLARAVATES 609

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 610 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 640


>gi|71066293|ref|YP_265020.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus
           273-4]
 gi|71039278|gb|AAZ19586.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus
           273-4]
          Length = 628

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKK 245

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 246 SAPCIIFIDEIDAV 259


>gi|89099328|ref|ZP_01172205.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. NRRL B-14911]
 gi|89085937|gb|EAR65061.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
           sp. NRRL B-14911]
          Length = 708

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   +IGQ++A + VA A+     R+             + L VGPTGVGKT +
Sbjct: 411 KNLEKSLSEKVIGQEEAVKKVAKAV-----RRSRAGLKSKNRPIGSFLFVGPTGVGKTEL 465

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA          I+++++++ E            GYVG +
Sbjct: 466 TKTLAEELFGSKDSMIRLDMSEYMEKHSISKIIGSPPGYVGHD 508



 Score = 41.5 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 51/260 (19%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   +  I +F   G   VG   L++  ++ +   +   IR+ + +    + +    ++I
Sbjct: 442 LKSKNRPIGSFLFVGPTGVGKTELTKTLAEELFGSKDSMIRLDMSE---YMEKHSISKII 498

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     +            Y I+ LDE +K         +   + G         V
Sbjct: 499 GSPPGYVGHDEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 558

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL--------PEIQGRFPVR 323
                 ++  S+    +  I       +  G+    + + +L        PE   RF   
Sbjct: 559 SFKDSVIIMTSNAGAGHREIK------VGFGSSEAVKESGILDSLGSFFKPEFLNRFDSI 612

Query: 324 VHLKSLNKSDFRLIL----TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379
           +  K L K     I+     +  + L  Q         ++L FT+++++ LA++  +   
Sbjct: 613 IEFKQLEKDSLLKIVQLMLEELNTALKEQ--------DMLLTFTDEAVEKLAELGYH--- 661

Query: 380 TVGDIGARRLQTVMERVLED 399
                GAR L+  ++  LED
Sbjct: 662 --PAFGARPLRRAIQEQLED 679


>gi|326803021|ref|YP_004320839.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650125|gb|AEA00308.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 716

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 10/178 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LL GP G GKT +++ +A  A  PF  +  ++F E+ +VG    ++ RDL D A
Sbjct: 225 RIPKGVLLEGPPGTGKTLLAKAVAGEANVPFYSISGSEFVEM-FVGVGASRV-RDLFDTA 282

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                     +      I+A  R   A  G        +   + L + +  + E D  + 
Sbjct: 283 KKNSPAIIFID-----EIDAVGRQRGAASGSGGHDEREQTLNQLLVEMDGFE-EKDNVIV 336

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
            ++++ S+   P     G  +   L  +     + ++  + V      L ++   +++
Sbjct: 337 ISATNRSDVLDPALLRPGRFDRQILVGR--PDVKGREAILKVHARNKPLAQNVDLKVV 392


>gi|312880242|ref|ZP_07740042.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310783533|gb|EFQ23931.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 639

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +      L++  R  +L A      +P+ +LL+G  G GKT +SR +A 
Sbjct: 157 DVAGCDEAKEELQEVVGFLKDPGRFARLGAK-----VPRGVLLLGAPGTGKTLLSRAVAG 211

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 212 EADVPFFSISGSDFVEM-FVGVGAARV-RDLFEQA 244


>gi|28571847|ref|NP_732941.2| spastin, isoform A [Drosophila melanogaster]
 gi|28571849|ref|NP_651206.3| spastin, isoform B [Drosophila melanogaster]
 gi|229559935|sp|Q8I0P1|SPAST_DROME RecName: Full=Spastin; AltName: Full=D-Spastin; AltName:
           Full=Dm-Spastin; AltName: Full=Dspastin
 gi|28381443|gb|AAF56223.3| spastin, isoform A [Drosophila melanogaster]
 gi|28381444|gb|AAN13975.2| spastin, isoform B [Drosophila melanogaster]
 gi|201065827|gb|ACH92323.1| FI06043p [Drosophila melanogaster]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|329298245|ref|ZP_08255581.1| ATP-dependent Clp protease ATP-binding subunit [Plautia stali
           symbiont]
          Length = 759

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66
           + + +   L   + GQ +A  A+  A++         A L  E  P  + L  GPTGVGK
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIKT------SRAGLGQERKPVGSFLFAGPTGVGK 501

Query: 67  TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           T ++ +LA+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 TEVTVQLAKALGIELLRFDMSEYMEHHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|323128182|gb|ADX25479.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQEDAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|300871697|ref|YP_003786570.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Brachyspira
           pilosicoli 95/1000]
 gi|300689398|gb|ADK32069.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Brachyspira
           pilosicoli 95/1000]
          Length = 859

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + ++GQ +A  +VA A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 566 QLEEVLHKRVVGQDEAITSVADAIR------RNRAGLSDENKPLGSFLFIGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA           +++++++ E            GYVG +
Sbjct: 620 AKTLADFLFSDEKALTRIDMSEYMEKFSVTRLIGAPPGYVGYD 662


>gi|296448894|ref|ZP_06890716.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296253598|gb|EFH00803.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 478

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 26  AKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82
           AK     +   LR+  + Q+L   +     P+ +LLVGP G GKT ++R +A  A  PF 
Sbjct: 1   AKEDLQEIVEFLRDPQKFQRLGGRI-----PRGVLLVGPPGTGKTLLARAIAGEANVPFF 55

Query: 83  KVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            +  + F E+ +VG    ++ RD+ + A   
Sbjct: 56  TISGSDFVEM-FVGVGASRV-RDMFEQAKKN 84


>gi|296268236|ref|YP_003650868.1| ATP-dependent chaperone ClpB [Thermobispora bispora DSM 43833]
 gi|296091023|gb|ADG86975.1| ATP-dependent chaperone ClpB [Thermobispora bispora DSM 43833]
          Length = 861

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A +AV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRLIGQHRAVQAVSDAV-----RRARAGISDPDRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA           ++++++++E   V R V
Sbjct: 619 ALAEFLFDDERAMTRIDMSEYSEKHTVARLV 649


>gi|258546118|ref|ZP_05706352.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Cardiobacterium hominis ATCC 15826]
 gi|258518543|gb|EEV87402.1| ATP-dependent Clp protease, ATP-binding subunit ClpA
           [Cardiobacterium hominis ATCC 15826]
          Length = 761

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ +A   +A A++              E    + L  GPTGVGKT +
Sbjct: 449 KTLERDLKTVVFGQNEAIEHLASAIK-----LSRAGLRDAEKPIGSFLFTGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            R+LA + G   ++ +++++ E            GYVG     ++ + +    +
Sbjct: 504 CRQLAHVLGIKLLRYDMSEYMESHTISRLIGAPPGYVGHEQGGLLTEQIQKNPH 557


>gi|215408561|emb|CAR31130.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|212534472|ref|XP_002147392.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210069791|gb|EEA23881.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 842

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK+A+  A+   + R  L   LR+    + +LL GP G GKT ++R +A  +
Sbjct: 552 DDVAGLETAKKALKEAVVYPFLRPDLFMGLREP--ARGMLLFGPPGTGKTMLARAVATES 609

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +  T   + G + E+++R L  +A
Sbjct: 610 KSTFFSVSASTLT-SKWHGES-EKLVRALFGLA 640


>gi|195573329|ref|XP_002104646.1| GD21056 [Drosophila simulans]
 gi|229559930|sp|B4QSF0|SPAST_DROSI RecName: Full=Spastin
 gi|194200573|gb|EDX14149.1| GD21056 [Drosophila simulans]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|195331488|ref|XP_002032433.1| GM26551 [Drosophila sechellia]
 gi|229559929|sp|B4HGG6|SPAST_DROSE RecName: Full=Spastin
 gi|194121376|gb|EDW43419.1| GM26551 [Drosophila sechellia]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 484 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 541

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 542 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 575


>gi|110678091|ref|YP_681098.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           denitrificans OCh 114]
 gi|109454207|gb|ABG30412.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter
           denitrificans OCh 114]
          Length = 872

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ  A RA++ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEDQLHGRVIGQNSAVRAISNAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 615 KAVAEFLFDDDNAMVRIDMSEFMEKHAVAR 644


>gi|15595656|ref|NP_249150.1| ClpA/B protease ATP binding subunit [Pseudomonas aeruginosa PAO1]
 gi|9946319|gb|AAG03848.1|AE004483_6 probable ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa PAO1]
          Length = 850

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 503 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 558 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 599


>gi|330998875|ref|ZP_08322602.1| cell division protease FtsH [Parasutterella excrementihominis YIT
           11859]
 gi|329576089|gb|EGG57608.1| cell division protease FtsH [Parasutterella excrementihominis YIT
           11859]
          Length = 678

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      +R++R           +P+ +LLVG  G GKT +++ +
Sbjct: 160 DVAGCDEAKEEVTEIVDYLKDPSRYQRLGG-------RIPRGVLLVGSPGTGKTLLAKAI 212

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 213 AGEAKVPFFTISGSDFVEM-FVGVGAARV-RDMFENAKKN 250


>gi|317123760|ref|YP_004097872.1| membrane protease FtsH catalytic subunit [Intrasporangium calvum
           DSM 43043]
 gi|315587848|gb|ADU47145.1| membrane protease FtsH catalytic subunit [Intrasporangium calvum
           DSM 43043]
          Length = 696

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 25/101 (24%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI   L       Q+  + +A+  +                +PK +LL G  G GKT +
Sbjct: 181 QEIKEFL-------QEPSKFLAVGAK----------------IPKGVLLYGQPGTGKTLL 217

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 218 ARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFEQA 256


>gi|312864117|ref|ZP_07724352.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
 gi|311100349|gb|EFQ58557.1| ATP-dependent metallopeptidase HflB [Streptococcus vestibularis
           F0396]
          Length = 659

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 203 LKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM- 256

Query: 94  YVGRNVEQIIRDLVDVAINIVRE 116
           +VG    ++ R L + A    R 
Sbjct: 257 FVGVGASRV-RSLFEDAKKAERA 278


>gi|251783432|ref|YP_002997737.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392064|dbj|BAH82523.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQEDAVSAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|224825048|ref|ZP_03698154.1| ATP-dependent chaperone ClpB [Lutiella nitroferrum 2002]
 gi|224602719|gb|EEG08896.1| ATP-dependent chaperone ClpB [Lutiella nitroferrum 2002]
          Length = 858

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 565 MEEVLHERLVGQDEAVRAVSDAIR------RSRSGLSDPNRPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 619 KTLAGFLFDSEDHLIRIDMSEYMEKHSVAR 648


>gi|237844855|ref|XP_002371725.1| ftsH protease, putative [Toxoplasma gondii ME49]
 gi|211969389|gb|EEB04585.1| ftsH protease, putative [Toxoplasma gondii ME49]
          Length = 902

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK ILL GP G GKT ++R +A  AG PF+    ++F E+ +VG    ++ R L   A
Sbjct: 364 RLPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVGVGASRL-RQLFAEA 421


>gi|254237311|ref|ZP_04930634.1| hypothetical protein PACG_03381 [Pseudomonas aeruginosa C3719]
 gi|126169242|gb|EAZ54753.1| hypothetical protein PACG_03381 [Pseudomonas aeruginosa C3719]
          Length = 850

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 503 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 558 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 599


>gi|116074892|ref|ZP_01472153.1| cell division protein FtsH4 [Synechococcus sp. RS9916]
 gi|116068114|gb|EAU73867.1| cell division protein FtsH4 [Synechococcus sp. RS9916]
          Length = 606

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   + V   L+      +L A +     P+ +LL+GP G GKT +++ +A
Sbjct: 145 EDVAGITEAKDELQEVVTFLKEPESFIRLGAKI-----PRGVLLIGPPGTGKTLLAKAIA 199

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 200 GEAGVPFFSMAASEFVEL-FVGVGASRV-RDLFRQA 233


>gi|291518252|emb|CBK73473.1| ATP-dependent metalloprotease FtsH [Butyrivibrio fibrisolvens 16/4]
          Length = 515

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK ++LVGP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +  +  
Sbjct: 81  RIPKGVILVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFAEAK 139

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 140 QNAPCIVFIDEIDAV 154


>gi|240014358|ref|ZP_04721271.1| putative ClpB protein [Neisseria gonorrhoeae DGI18]
 gi|240016791|ref|ZP_04723331.1| putative ClpB protein [Neisseria gonorrhoeae FA6140]
 gi|240121920|ref|ZP_04734882.1| putative ClpB protein [Neisseria gonorrhoeae PID24-1]
 gi|260440792|ref|ZP_05794608.1| putative ClpB protein [Neisseria gonorrhoeae DGI2]
 gi|291044107|ref|ZP_06569823.1| ClpB protein [Neisseria gonorrhoeae DGI2]
 gi|291012570|gb|EFE04559.1| ClpB protein [Neisseria gonorrhoeae DGI2]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|254492204|ref|ZP_05105378.1| ATPase, AAA family [Methylophaga thiooxidans DMS010]
 gi|224462529|gb|EEF78804.1| ATPase, AAA family [Methylophaga thiooxydans DMS010]
          Length = 861

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  +VA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMDEALHERVIGQDEAVSSVANAIR------RSRAGLSDPNRPNGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 615 CKSLATFLFDTEEAMVRIDMSEFMEKHSVARLV 647


>gi|218889199|ref|YP_002438063.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa LESB58]
 gi|218769422|emb|CAW25182.1| probable ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa LESB58]
          Length = 850

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 503 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 558 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 599


>gi|28897788|ref|NP_797393.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|28806001|dbj|BAC59277.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328473236|gb|EGF44084.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio
           parahaemolyticus 10329]
          Length = 756

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 447 SDKDILKNLDGKMKMLVFGQDNAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|312876733|ref|ZP_07736712.1| ATPase AAA-2 domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796464|gb|EFR12814.1| ATPase AAA-2 domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 829

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|293391250|ref|ZP_06635584.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951784|gb|EFE01903.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 856

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEFLHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALASFLFDSEDAMVRIDMSEFMEKHSVSRLV 647


>gi|283457233|ref|YP_003361803.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
 gi|310946761|sp|D2NQQ7|FTSH_ROTMD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|283133218|dbj|BAI63983.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18]
          Length = 756

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 233 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKEA 289


>gi|240115399|ref|ZP_04729461.1| putative ClpB protein [Neisseria gonorrhoeae PID18]
 gi|268601078|ref|ZP_06135245.1| chaperone clpB [Neisseria gonorrhoeae PID18]
 gi|268585209|gb|EEZ49885.1| chaperone clpB [Neisseria gonorrhoeae PID18]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|240080989|ref|ZP_04725532.1| putative ClpB protein [Neisseria gonorrhoeae FA19]
 gi|240117696|ref|ZP_04731758.1| putative ClpB protein [Neisseria gonorrhoeae PID1]
 gi|240123250|ref|ZP_04736206.1| putative ClpB protein [Neisseria gonorrhoeae PID332]
 gi|268597099|ref|ZP_06131266.1| chaperone clpB [Neisseria gonorrhoeae FA19]
 gi|268603397|ref|ZP_06137564.1| ClpB protein [Neisseria gonorrhoeae PID1]
 gi|268681877|ref|ZP_06148739.1| ClpB protein [Neisseria gonorrhoeae PID332]
 gi|268550887|gb|EEZ45906.1| chaperone clpB [Neisseria gonorrhoeae FA19]
 gi|268587528|gb|EEZ52204.1| ClpB protein [Neisseria gonorrhoeae PID1]
 gi|268622161|gb|EEZ54561.1| ClpB protein [Neisseria gonorrhoeae PID332]
          Length = 857

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 647


>gi|228476803|ref|ZP_04061451.1| cell division protein FtsH [Streptococcus salivarius SK126]
 gi|228251540|gb|EEK10677.1| cell division protein FtsH [Streptococcus salivarius SK126]
          Length = 659

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 203 LKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM- 256

Query: 94  YVGRNVEQIIRDLVDVAINIVRE 116
           +VG    ++ R L + A    R 
Sbjct: 257 FVGVGASRV-RSLFEDAKKAERA 278


>gi|209560191|ref|YP_002286663.1| Putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes NZ131]
 gi|209541392|gb|ACI61968.1| Putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes NZ131]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|149377764|ref|ZP_01895497.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
 gi|149357936|gb|EDM46425.1| ATPase with chaperone activity, ATP-binding subunit [Marinobacter
           algicola DG893]
          Length = 858

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEALHGRVIGQDEAVEAVSNAVR------RSRAGLSDPHRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALASFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|139474523|ref|YP_001129239.1| stress response-related Clp ATPase [Streptococcus pyogenes str.
           Manfredo]
 gi|134272770|emb|CAM31045.1| putative stress response-related Clp ATPase [Streptococcus pyogenes
           str. Manfredo]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|116054188|ref|YP_788632.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115589409|gb|ABJ15424.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 850

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT ++
Sbjct: 503 QMEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        I+++++++ E            GYVG +
Sbjct: 558 KALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYD 599


>gi|115379537|ref|ZP_01466628.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|115363446|gb|EAU62590.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 803

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ  A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT  
Sbjct: 490 KMEDRLSNRVIGQHSAIEAVSNAVR------RARSGLQDPNRPIGSFIFLGPTGVGKTET 543

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA       +  I+++++++ E   V R V
Sbjct: 544 AKALAEFLFDDDSSMIRIDMSEYMEKHSVARLV 576


>gi|19746949|ref|NP_608085.1| endopeptidase Clp ATP-binding chain C [Streptococcus pyogenes
           MGAS8232]
 gi|19749200|gb|AAL98584.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes MGAS8232]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|93006844|ref|YP_581281.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis
           K5]
 gi|92394522|gb|ABE75797.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis
           K5]
          Length = 628

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ IL+VGP G GKT ++R +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKK 245

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 246 SAPCIIFIDEIDAV 259


>gi|85081618|ref|XP_956756.1| hypothetical protein NCU01479 [Neurospora crassa OR74A]
 gi|28917832|gb|EAA27520.1| hypothetical protein NCU01479 [Neurospora crassa OR74A]
 gi|38566845|emb|CAE76151.1| matrix AAA protease MAP-1 (mitochondrial) [Neurospora crassa]
          Length = 928

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  +   +   +   R Q+L A +     P+  +L GP G GKT +++  A 
Sbjct: 431 DVAGMDEAKVEIMEFVQFLKEPERFQKLGAKI-----PRGAILSGPPGTGKTLLAKATAG 485

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +  PF  V  ++F E+ +VG    ++ RDL   A
Sbjct: 486 ESQVPFFSVSGSEFVEM-FVGVGASRV-RDLFATA 518


>gi|282866331|ref|ZP_06275376.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE]
 gi|282558727|gb|EFB64284.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE]
          Length = 842

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|242064242|ref|XP_002453410.1| hypothetical protein SORBIDRAFT_04g005570 [Sorghum bicolor]
 gi|241933241|gb|EES06386.1| hypothetical protein SORBIDRAFT_04g005570 [Sorghum bicolor]
          Length = 990

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 667 LEDVLHKRVIGQDIAVKSVANAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELG 720

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++++ E   V R V
Sbjct: 721 KTLAEFLFNTENALIRIDMSEYMEKHAVSRLV 752


>gi|153837332|ref|ZP_01989999.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           parahaemolyticus AQ3810]
 gi|149749363|gb|EDM60136.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           parahaemolyticus AQ3810]
          Length = 756

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELD----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ +A  A++ A++             D     + L  GPTG
Sbjct: 447 SDKDILKNLDGKMKMLVFGQDNAIDALSEAIK-----LSRAGLGVDNKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|156097945|ref|XP_001615005.1| chaperone clpB 1 [Plasmodium vivax SaI-1]
 gi|148803879|gb|EDL45278.1| chaperone clpB 1, putative [Plasmodium vivax]
          Length = 913

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 30/251 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + I+GQ DA R V+ A+      Q+    + D   P  +++ +GPTGVGKT +S
Sbjct: 616 LDKELHKKIVGQDDAVRIVSKAV------QRSRVGMNDPKRPIASLMFLGPTGVGKTELS 669

Query: 71  RRLARLA-GAPFIKV--EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA +    P   +  +++++ E           I  L+  A   V   +   +    +
Sbjct: 670 KVLADVLFDTPDAVIHFDMSEYMEKH--------SISKLIGAAPGYVGYEQGGLL----T 717

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
               ++    ++         +V+   LR  E      + +++DT  +++NF        
Sbjct: 718 DAVRKKPYSIILFDEIEKAHPDVYNLLLRVIE------EGKLSDTKGNLANFRNTIIIFT 771

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
             L    +        +K+KI+  V K   E  R E    ID D V  DS+   E   I 
Sbjct: 772 SNLGSQSILDLANDPNKKEKIKQQVMKSVRETFRPEFYNRID-DHVIFDSLSKKELKQIA 830

Query: 248 FLDEFDKIVAR 258
            + E +K+  R
Sbjct: 831 NI-EIEKVANR 840


>gi|92112632|ref|YP_572560.1| ATPase AAA-2 [Chromohalobacter salexigens DSM 3043]
 gi|91795722|gb|ABE57861.1| ATPase AAA-2 [Chromohalobacter salexigens DSM 3043]
          Length = 860

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 564 MEEALHERVIGQDEAVTAVANAVR------RSRAGLADPGRPNGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KSLASFLFDTEEAMVRIDMSEFMEKHSVAR 647


>gi|304319819|ref|YP_003853462.1| endopeptidase Clp: ATP-binding subunit B, clpB [Parvularcula
           bermudensis HTCC2503]
 gi|303298722|gb|ADM08321.1| endopeptidase Clp: ATP-binding subunit B, clpB [Parvularcula
           bermudensis HTCC2503]
          Length = 887

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 564 MEEVLHSRVIGQEEAVTAVSAAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELT 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA           ++++++F E   V R
Sbjct: 618 KALAAFLFDDDQAIARIDMSEFMEKHAVSR 647


>gi|313892008|ref|ZP_07825609.1| negative regulator of genetic competence ClpC/MecB [Dialister
           microaerophilus UPII 345-E]
 gi|313119651|gb|EFR42842.1| negative regulator of genetic competence ClpC/MecB [Dialister
           microaerophilus UPII 345-E]
          Length = 806

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A ++D   P  + + +G TGVGKT ++
Sbjct: 497 LEDELKKRVIGQDEAIHAVAQAIR------RARAGMKDPKHPIGSFIFLGSTGVGKTELA 550

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA       +  ++ +++++ E            GYVG +
Sbjct: 551 RALAEYMFGNESALVRFDMSEYMEKHEVSRLIGAPPGYVGYD 592


>gi|297180853|gb|ADI17058.1| ATPases with chaperone activity, ATP-binding subunit [uncultured
           alpha proteobacterium HF0010_30A23]
          Length = 864

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + ++GQ+ A  A+A A+R      +  A L D   P+   L +GPTGVGKT +
Sbjct: 560 QMEQALAKRVVGQEAAVTAIAKAVR------RARAGLSDPNRPQGSFLFLGPTGVGKTEL 613

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
            + LA          ++++++++ E            GYVG +   I+ + +      V 
Sbjct: 614 VKTLASFLFDDDTAMLRLDMSEYMEKHAVSRLIGAPPGYVGYDEGGILTEAIRRRPYQV- 672

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DEV E+A  +    +L  L     T +           G   D    I V  ++  
Sbjct: 673 -VLFDEV-EKAHPDIFNILLQVLDDGRLTDS----------QGRTVDFRNTIIVLTSNLG 720

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRK 205
                 PG +S   +  +E+   V  S R 
Sbjct: 721 AKIMTEPGASSDDDVVQAEVMKIVRQSFRP 750


>gi|294631641|ref|ZP_06710201.1| cell division protein FtsH [Streptomyces sp. e14]
 gi|292834974|gb|EFF93323.1| cell division protein FtsH [Streptomyces sp. e14]
          Length = 644

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 19  YIIGQQDAKRAV---AIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  + K  +      L++   +RR           MP+ +LL GP G GKT ++R +
Sbjct: 170 DVAGIDEVKGELDDVVDFLKHPDDYRRMGA-------KMPRGVLLTGPPGTGKTLLARAV 222

Query: 74  ARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF     ++F E  +G     V ++  +   VA +I+     D +
Sbjct: 223 AGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKVAPSIIFIDEIDTI 273


>gi|260577287|ref|ZP_05845260.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2]
 gi|259020468|gb|EEW23791.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2]
          Length = 870

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A  AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 559 MEDELGKRVIGQRRALTAVANAVR------RARAGLNDEKRPLGSFLFLGPTGVGKTELT 612

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       A  +++++++F E   V R
Sbjct: 613 KAVAEYLFDDDAAMVRIDMSEFMEKHAVSR 642


>gi|256372657|ref|YP_003110481.1| ATPase AAA-2 domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009241|gb|ACU54808.1| ATPase AAA-2 domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 829

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 23/242 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL   I+GQ++A  A++ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 509 MEDELHHRIVGQEEAISALSRAIR------RTRAGLKDPRRPSGSFIFLGPTGVGKTELA 562

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I+++++++ E   V R V      +             + VR +  
Sbjct: 563 KTLAEFLFGDQDALIQLDMSEYMEKHTVARLVGAPPGYV----GYDEGGQLTEAVRRRPF 618

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++         NT     +  R  +   + +D +     + I       G   
Sbjct: 619 SVVLFDEIEK--AHPDIFNTLLQILEDGRLTDAQGRTVDFK-----NTILIMTSNLGTQ- 670

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247
            +      F+K       ++++M + +      + E    ID + +    ++  E   IV
Sbjct: 671 DLHRAQVGFAKSSEDVNHERMKMRLNEALKTHFKPEFLNRID-EVIVFHELRRDEVMAIV 729

Query: 248 FL 249
            L
Sbjct: 730 SL 731


>gi|261365006|ref|ZP_05977889.1| ATP-dependent metalloprotease FtsH [Neisseria mucosa ATCC 25996]
 gi|288566591|gb|EFC88151.1| ATP-dependent metalloprotease FtsH [Neisseria mucosa ATCC 25996]
          Length = 651

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK  V      L+   R Q L        +P+ ILL G  G GKT +++ +A 
Sbjct: 161 DVAGCDEAKEEVQEIVDYLKAPSRYQSLGG-----RVPRGILLAGSPGTGKTLLAKAIAG 215

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 216 EAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|163790568|ref|ZP_02184997.1| ATP-dependent Clp protease, ATP-binding subunit ClpE
           [Carnobacterium sp. AT7]
 gi|159874171|gb|EDP68246.1| ATP-dependent Clp protease, ATP-binding subunit ClpE
           [Carnobacterium sp. AT7]
          Length = 747

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  +L +++IGQ +A   V+ A+R    R       R      + L VGPTGVGKT +
Sbjct: 430 RNLGHDLKKHVIGQDEAIDKVSRAIR--RSRIGFNNKSR---PIGSFLFVGPTGVGKTEL 484

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +++LA         +I+ +++++ E            GYVG +
Sbjct: 485 AKQLALELFGNKEAYIRFDMSEYMEKHSVSKLIGSPPGYVGYD 527



 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 35/250 (14%)

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
           + S  I +F   G   VG   L++  +  +   ++  IR  + +    + +    +LI  
Sbjct: 463 NKSRPIGSFLFVGPTGVGKTELAKQLALELFGNKEAYIRFDMSE---YMEKHSVSKLIGS 519

Query: 231 ---DTVHRDSIQMVE-----NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQR 273
                 + ++ Q+ E      Y I+ LDE +K         +   D G         V  
Sbjct: 520 PPGYVGYDEAGQLTEKVRHNPYSIILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSF 579

Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL----PEIQGRFPVRVHLKSL 329
               ++  S+  T  G++         +     S    L     PE   RF   V   SL
Sbjct: 580 KDTIIIMTSNAGT--GTVEASVGFGATTSGTQNSVLNHLTDYFKPEFINRFDGIVEFNSL 637

Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389
            K +   I+      LI    ++++ +GI ++ T+ + + LA++  +       +GAR L
Sbjct: 638 TKENLLFIV----DLLIKDVNDMLENQGITIEVTQSAKEKLAELGYDPK-----LGARPL 688

Query: 390 QTVMERVLED 399
           + V++  +ED
Sbjct: 689 RRVIQEQIED 698


>gi|118411032|ref|YP_874427.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
 gi|116739779|gb|ABK20650.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum]
          Length = 624

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  +AK     +   L+   R   + A +     PK +LLVGP G GKT +++ +A
Sbjct: 180 DDIAGIDEAKAEFEEIVSFLKEPERYTLVGAKI-----PKGVLLVGPPGTGKTLLAKAIA 234

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  ++F E+ ++G    +I RDL   A
Sbjct: 235 NEANVPFYSVAGSEFVEM-FIGIGASRI-RDLFKKA 268


>gi|66809901|ref|XP_638674.1| peptidase M41, FtsH domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60467280|gb|EAL65313.1| peptidase M41, FtsH domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 764

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK         L+N  +   + A +     P+  +LVGP G GKT I++  A 
Sbjct: 303 DVAGLGEAKVEIEEFVNFLKNPKKFHDIGAKI-----PRGAILVGPPGTGKTLIAKATAG 357

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            A  PF     + F E+ +VG     V  +       A  IV     D V
Sbjct: 358 EANVPFYSTSGSDFVEM-FVGVGPSRVRDLFEQARKNAPCIVFIDEIDAV 406


>gi|328948343|ref|YP_004365680.1| ATP-dependent chaperone ClpB [Treponema succinifaciens DSM 2489]
 gi|328448667|gb|AEB14383.1| ATP-dependent chaperone ClpB [Treponema succinifaciens DSM 2489]
          Length = 861

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A + V+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 566 QLEEVLHKRVIGQNEAVQVVSDAIR------RNRSGLSDPNRPLGSFLFIGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA           +++++++ E            GYVG +
Sbjct: 620 AKTLADFLFNDEKSLTRIDMSEYMEKFSVSRLIGAPPGYVGYD 662


>gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 655

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + GQ +AK     V   L++     ++ A +     P+ +LLVGP G GKT +++ +A
Sbjct: 194 KDVAGQVEAKYELEEVVSFLKHPDHFTKVGAKI-----PRGVLLVGPPGTGKTLLAKAVA 248

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             +G  F     + F E+ +VG    ++ RDL + A   
Sbjct: 249 GESGVSFFHTSGSDFVEM-FVGMGAARV-RDLFEQARKH 285


>gi|312793061|ref|YP_004025984.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180201|gb|ADQ40371.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 829

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|283784649|ref|YP_003364514.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
 gi|282948103|emb|CBG87668.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|320010065|gb|ADW04915.1| ATPase AAA-2 domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 841

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KTLAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|224582757|ref|YP_002636555.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224467284|gb|ACN45114.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|326622626|gb|EGE28971.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 747

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 437 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 491

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 492 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 547


>gi|195554150|ref|XP_002076850.1| GD24604 [Drosophila simulans]
 gi|194202868|gb|EDX16444.1| GD24604 [Drosophila simulans]
          Length = 504

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 339 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 393

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 394 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 445


>gi|161503925|ref|YP_001571037.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865272|gb|ABX21895.1| hypothetical protein SARI_02016 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|145534456|ref|XP_001452972.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420672|emb|CAK85575.1| unnamed protein product [Paramecium tetraurelia]
          Length = 420

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 34/191 (17%)

Query: 20  IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G   AK+ +      L++  + + + A LR     + +++ GP G GKT +++  A  
Sbjct: 163 IYGLDHAKKQLQQIIEYLQDPLKYRNVGARLR-----RGVMIYGPPGTGKTMLAKATATE 217

Query: 77  AGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQA------- 126
           +   F+    T+F E+ YVG   + V ++ +     +  I+     D +  +        
Sbjct: 218 SNVNFLYCSATEFIEV-YVGTGPKRVRELFKKARQSSPAIIFIDEIDSIAYKRKNQNFGT 276

Query: 127 -------SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVAD 171
                   ++   ++L  L G             N  ++  + L      D +I+I +  
Sbjct: 277 ETGGDNERVSTLNQLLTELDGFKENENIVVIAATNRIQILDEALLRSGRFDIKIEINLPS 336

Query: 172 TSSDISNFDIP 182
            +       + 
Sbjct: 337 ENERKGIMGVH 347


>gi|94989403|ref|YP_597504.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS9429]
 gi|94991340|ref|YP_599440.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS10270]
 gi|94542911|gb|ABF32960.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS9429]
 gi|94544848|gb|ABF34896.1| Negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS10270]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|124810171|ref|XP_001348790.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
 gi|23497690|gb|AAN37229.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
          Length = 706

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           P E V      + G  + K+ +      L+N  +  ++ A L     PK ILL G  G G
Sbjct: 245 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKL-----PKGILLSGEPGTG 299

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           KT I+R +A  A  PF++   ++F E+ +VG    +I R+L   A   
Sbjct: 300 KTLIARAIAGEANVPFLQASGSEFEEM-FVGVGARRI-RELFQAAKKH 345


>gi|17547183|ref|NP_520585.1| ATP-dependent protease ATP-binding specificity subunit [Ralstonia
           solanacearum GMI1000]
 gi|17429485|emb|CAD16171.1| probable atp-dependent protease (atp-binding specificity subunit)
           protein [Ralstonia solanacearum GMI1000]
          Length = 762

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + +    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC 560


>gi|21911303|ref|NP_665571.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes MGAS315]
 gi|28896676|ref|NP_803026.1| endopeptidase Clp ATP-binding chain C [Streptococcus pyogenes
           SSI-1]
 gi|21905517|gb|AAM80374.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes MGAS315]
 gi|28811930|dbj|BAC64859.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes SSI-1]
          Length = 814

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|83746256|ref|ZP_00943309.1| Hypothetical Protein RRSL_03844 [Ralstonia solanacearum UW551]
 gi|207723597|ref|YP_002253996.1| atp-dependent protease (atp-binding specificity subunit) protein
           [Ralstonia solanacearum MolK2]
 gi|207742559|ref|YP_002258951.1| atp-dependent protease (atp-binding specificity subunit) protein
           [Ralstonia solanacearum IPO1609]
 gi|300703255|ref|YP_003744857.1| ATP-dependent clp protease ATP-binding subunit Clpa [Ralstonia
           solanacearum CFBP2957]
 gi|83727006|gb|EAP74131.1| Hypothetical Protein RRSL_03844 [Ralstonia solanacearum UW551]
 gi|206588799|emb|CAQ35762.1| atp-dependent protease (atp-binding specificity subunit) protein
           [Ralstonia solanacearum MolK2]
 gi|206593952|emb|CAQ60879.1| atp-dependent protease (atp-binding specificity subunit) protein
           [Ralstonia solanacearum IPO1609]
 gi|299070918|emb|CBJ42222.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ralstonia
           solanacearum CFBP2957]
          Length = 762

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + +    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC 560


>gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  R   L   L     PK  LLVGP G GKT +++ +A+ 
Sbjct: 188 IRGCDEAKKELEDIVEFLKDPERFYYLGGRL-----PKGALLVGPPGCGKTMLAKAIAKE 242

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ YVG    ++ R+L   A          +    A I  +E  +D
Sbjct: 243 AGVNFFYATGSEFDEM-YVGVGSRRV-RELFAAA----------KANSPALIFIDE--ID 288

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL G   +T  + +R    + L + +    +  I V      ++  + P      +    
Sbjct: 289 ALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIV------LAATNTPDALDKALTRPG 342

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM--VENYGIVFLDE 251
              + +       K R  V + Y  L + ++D  +    + R +      E   +V +  
Sbjct: 343 RFDTTISVDPPDMKGREEVLEVY--LNKVKADASVKAQEIARGTTGFTGAELSNLVNIAA 400

Query: 252 F 252
            
Sbjct: 401 I 401


>gi|46203683|ref|ZP_00051159.2| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 669

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   +IGQ++A RA A A+     R          +     L +GPTGVGKT ++
Sbjct: 585 KLEEKLHERVIGQEEAIRAWADAV-----RLARAGLREVSVPTATFLFLGPTGVGKTELA 639

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYV 95
           + LA +        I+++++++ E   V
Sbjct: 640 KTLAEVIFGDQHALIRIDMSEYGERHSV 667


>gi|326525639|dbj|BAJ88866.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 984

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 661 LEDVLHKRVIGQDIAVKSVANAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELG 714

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++++ E   V R V
Sbjct: 715 KTLAEFLFNTENALIRIDMSEYMEKHAVSRLV 746


>gi|309781482|ref|ZP_07676218.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ralstonia sp.
           5_7_47FAA]
 gi|308919895|gb|EFP65556.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ralstonia sp.
           5_7_47FAA]
          Length = 762

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|301061956|ref|ZP_07202683.1| cell division protease FtsH [delta proteobacterium NaphS2]
 gi|300443939|gb|EFK07977.1| cell division protease FtsH [delta proteobacterium NaphS2]
          Length = 611

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 89/217 (41%), Gaps = 24/217 (11%)

Query: 21  IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80
            G  +AK+ + + +    +      +L    MPK +LLVGP G GKT +++ +A  +G P
Sbjct: 160 AGVDEAKQEL-VEVIEFLKEPARFTELGG-RMPKGVLLVGPPGTGKTLLAKAVAGESGVP 217

Query: 81  FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVG 140
           F  +  ++F E+ +VG    ++ RDL   A            +E++        +D L  
Sbjct: 218 FFSLSGSEFVEM-FVGLGAARV-RDLFTQA------------KEKSPCII---FIDELDA 260

Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF---DIPGGASVGILNLSELFS 197
                    +     R+  ++   ++++  D +  +      + P      +L       
Sbjct: 261 LGKARGFGAMGGHDEREQTLNQLLVEMDGFDPTLGVILMAATNRPEILDPALLRPGRFDR 320

Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
           +++     KK R  + K +  L    +++ +D++ + 
Sbjct: 321 QILVDRPDKKGREDILKIH--LKNIRANKNLDLEKLA 355


>gi|297243145|ref|ZP_06927083.1| ClpB ATP-binding subunit of Clp protease [Gardnerella vaginalis
           AMD]
 gi|296889356|gb|EFH28090.1| ClpB ATP-binding subunit of Clp protease [Gardnerella vaginalis
           AMD]
          Length = 864

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ +A +A+A A+     R+             + L +GPTGVGKT +++
Sbjct: 568 MEKELSKRVVGQSEAIQAIADAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAMVRIDMSEYMEKASVSR 651


>gi|296103111|ref|YP_003613257.1| ATP-dependent Clp protease ATP-binding subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057570|gb|ADF62308.1| ATP-dependent Clp protease ATP-binding subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 759

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R + + L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 449 TLRTLGNRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
            ++ +L++  G   ++ +++++ E            GYVG +   +   L D  I     
Sbjct: 504 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL---LTDAVIKHPHA 560

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNT 147
               +  E+A  +    +L  +   T T N 
Sbjct: 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 591


>gi|270264626|ref|ZP_06192891.1| hypothetical protein SOD_i00430 [Serratia odorifera 4Rx13]
 gi|270041309|gb|EFA14408.1| hypothetical protein SOD_i00430 [Serratia odorifera 4Rx13]
          Length = 924

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   ++GQ DA  AV+ A+     R       +        L +GPTGVGKT +++
Sbjct: 590 MEDKLRERVVGQDDAVEAVSDAV-----RLSRAGLSQAHRPIATFLFLGPTGVGKTELAK 644

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
            +A          I+++++++ E            GYVG +
Sbjct: 645 AIAETVFGDEQAIIRIDMSEYMERHAVARLIGAPPGYVGYD 685


>gi|255326126|ref|ZP_05367213.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
 gi|255296837|gb|EET76167.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296]
          Length = 724

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKEA 268


>gi|197251138|ref|YP_002145863.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214841|gb|ACH52238.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 763

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 453 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 507

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 563


>gi|195445207|ref|XP_002070222.1| GK11148 [Drosophila willistoni]
 gi|229559932|sp|B4NBP4|SPAST_DROWI RecName: Full=Spastin
 gi|194166307|gb|EDW81208.1| GK11148 [Drosophila willistoni]
          Length = 777

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 503 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 560

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 561 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 594


>gi|56414002|ref|YP_151077.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614824|ref|YP_001588789.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168230819|ref|ZP_02655877.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236856|ref|ZP_02661914.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168263569|ref|ZP_02685542.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466529|ref|ZP_02700391.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819924|ref|ZP_02831924.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445498|ref|YP_002040146.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471361|ref|ZP_03077345.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736159|ref|YP_002114002.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197362925|ref|YP_002142562.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245341|ref|YP_002214873.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390686|ref|ZP_03217297.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204929911|ref|ZP_03220932.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207856340|ref|YP_002242991.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|56128259|gb|AAV77765.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161364188|gb|ABX67956.1| hypothetical protein SPAB_02577 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404161|gb|ACF64383.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457725|gb|EDX46564.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711661|gb|ACF90882.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631031|gb|EDX49617.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094402|emb|CAR59918.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197290116|gb|EDY29473.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939857|gb|ACH77190.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603131|gb|EDZ01677.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204320905|gb|EDZ06106.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205334776|gb|EDZ21540.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343166|gb|EDZ29930.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347800|gb|EDZ34431.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708143|emb|CAR32436.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320085182|emb|CBY94969.1| ClpA homolog protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322616382|gb|EFY13291.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619632|gb|EFY16507.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622672|gb|EFY19517.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628585|gb|EFY25372.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631521|gb|EFY28277.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637048|gb|EFY33751.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641754|gb|EFY38390.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644454|gb|EFY40994.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649576|gb|EFY46007.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654122|gb|EFY50445.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658037|gb|EFY54304.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663511|gb|EFY59713.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670247|gb|EFY66387.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671483|gb|EFY67605.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676839|gb|EFY72906.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682764|gb|EFY78783.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686443|gb|EFY82425.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196103|gb|EFZ81266.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196751|gb|EFZ81895.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202969|gb|EFZ88003.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209010|gb|EFZ93947.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211915|gb|EFZ96743.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215153|gb|EFZ99898.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222356|gb|EGA06734.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226877|gb|EGA11060.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229831|gb|EGA13954.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233056|gb|EGA17152.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240791|gb|EGA24833.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243108|gb|EGA27128.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247429|gb|EGA31385.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251651|gb|EGA35518.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257361|gb|EGA41059.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261950|gb|EGA45516.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267965|gb|EGA51444.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271968|gb|EGA55383.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 758

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|16125131|ref|NP_419695.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Caulobacter
           crescentus CB15]
 gi|221233859|ref|YP_002516295.1| ClpB protein [Caulobacter crescentus NA1000]
 gi|54035891|sp|Q9A9T4|CLPB_CAUCR RecName: Full=Chaperone protein ClpB
 gi|13422139|gb|AAK22863.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Caulobacter
           crescentus CB15]
 gi|220963031|gb|ACL94387.1| ClpB protein [Caulobacter crescentus NA1000]
          Length = 859

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 29/247 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 559 KMEDELRGRVVGQDEALEAVSDAVR------RARAGLQDPSKPIGSFLFLGPTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA       A   +++++++ E            GYVG +      E I R    V 
Sbjct: 613 TKSLAEFLFADEAAITRMDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAIRRRPYQVV 672

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    +V        ++ R+ D         NT  +    L    ++ +E   +V
Sbjct: 673 LFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQEDGEDV 732

Query: 170 ADTSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                 + N          +  + E+  F ++        +R+ +Q+    L        
Sbjct: 733 EAVRPMVMNTVRGHFRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALA 792

Query: 228 IDMDTVH 234
           +D + ++
Sbjct: 793 LDAEALN 799


>gi|114561854|ref|YP_749367.1| ATPase [Shewanella frigidimarina NCIMB 400]
 gi|114333147|gb|ABI70529.1| ATPase AAA-2 domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 865

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 570 METALHERVIGQNEAVDAVSNAIR------RSRAGLADPQRPIGSFLFLGPTGVGKTELC 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+      +  +++++++F E   V R V
Sbjct: 624 KSLAKFLFDSESALVRIDMSEFMEKHTVSRLV 655


>gi|331083658|ref|ZP_08332769.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403869|gb|EGG83421.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 603

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 193 RIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 250

Query: 111 INI 113
              
Sbjct: 251 KKN 253


>gi|317497135|ref|ZP_07955461.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895545|gb|EFV17701.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 615

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  ++ A +     PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 183 LKNPGRFIKIGARI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 236

Query: 94  YVGRNVEQIIRDLVDVAINI 113
           +VG    ++ RDL   A   
Sbjct: 237 FVGVGAARV-RDLFAEAKKH 255


>gi|298253232|ref|ZP_06977024.1| ClpB ATP-binding subunit of Clp protease [Gardnerella vaginalis
           5-1]
 gi|297532627|gb|EFH71513.1| ClpB ATP-binding subunit of Clp protease [Gardnerella vaginalis
           5-1]
          Length = 864

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ +A +A+A A+     R+             + L +GPTGVGKT +++
Sbjct: 568 MEKELSKRVVGQSEAIQAIADAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAMVRIDMSEYMEKASVSR 651


>gi|325678810|ref|ZP_08158408.1| ATPase, AAA family [Ruminococcus albus 8]
 gi|324109314|gb|EGC03532.1| ATPase, AAA family [Ruminococcus albus 8]
          Length = 776

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 20/103 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  E+ + IIGQ++A   VA A+    +R ++  D R    P + + VGPTGVGKT +
Sbjct: 477 RNLKDEMSKRIIGQEEAVDKVAKAI----KRTRVQLDKR--RRPASFIFVGPTGVGKTEL 530

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            + L         P I+++++++ E            GYVG +
Sbjct: 531 VKVLGESLFDATEPLIRIDMSEYMEKHSVSKLIGSPPGYVGFD 573



 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
           L PE  GR    V    L K D+  I     + ++ + K  +  + + L++T+D++  +A
Sbjct: 667 LKPEFLGRVDEIVMFNPLTKEDYAKIA----ALMLDEMKAPLSEKAVKLEYTDDALKLIA 722

Query: 372 DVAVNLNSTVGDIGARR----LQTVMERVLEDISFSASDLQEKTVVIDAE 417
           +      S    +GAR     ++T +E  + ++     +     V I A+
Sbjct: 723 E-----KSHGNRLGARDIRRVIRTEIEDKIAEVIVEKGEGSITLVKIAAD 767


>gi|291614661|ref|YP_003524818.1| ATP-dependent chaperone ClpB [Sideroxydans lithotrophicus ES-1]
 gi|291584773|gb|ADE12431.1| ATP-dependent chaperone ClpB [Sideroxydans lithotrophicus ES-1]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEDKLHERVVGQDEAVRLVSDAIR------RSRSGLSDPNRPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 619 CKTLANFLFDSEDHLIRIDMSEFMEKHSVAR 649


>gi|238022814|ref|ZP_04603240.1| hypothetical protein GCWU000324_02727 [Kingella oralis ATCC 51147]
 gi|237866017|gb|EEP67153.1| hypothetical protein GCWU000324_02727 [Kingella oralis ATCC 51147]
          Length = 858

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 563 KMEDVLHRRVVGQDEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   + R
Sbjct: 617 CKALAGFLFDSEDHLIRIDMSEYMEKHSIAR 647


>gi|148231546|ref|NP_001086725.1| spastin [Xenopus laevis]
 gi|82235616|sp|Q6AZT2|SPAST_XENLA RecName: Full=Spastin
 gi|50603653|gb|AAH77358.1| Spg4-prov protein [Xenopus laevis]
          Length = 600

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  + 
Sbjct: 327 DIAGQDLAKQALQEIVILPSIRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAESN 384

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +     T   YVG   E+++R L  VA
Sbjct: 385 ATFFNISAASLT-SKYVGEG-EKLVRALFSVA 414


>gi|87198102|ref|YP_495359.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133783|gb|ABD24525.1| membrane protease FtsH catalytic subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 644

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      LR+  R  +L   +     PK  LLVG  G GKT ++R +A
Sbjct: 163 DDVAGIDEAREELQEIVEFLRDPSRFSKLGGQI-----PKGALLVGSPGTGKTLLARAIA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 218 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 267


>gi|333026019|ref|ZP_08454083.1| putative ATP-dependent protease subunit [Streptomyces sp. Tu6071]
 gi|332745871|gb|EGJ76312.1| putative ATP-dependent protease subunit [Streptomyces sp. Tu6071]
          Length = 947

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ+ A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 638 MEDELGRRLIGQKQAVAAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 692

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 693 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 723


>gi|312621967|ref|YP_004023580.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202434|gb|ADQ45761.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 829

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|302024539|ref|ZP_07249750.1| stress response-related Clp ATPase [Streptococcus suis 05HAS68]
 gi|330833586|ref|YP_004402411.1| stress response-related Clp ATPase [Streptococcus suis ST3]
 gi|329307809|gb|AEB82225.1| stress response-related Clp ATPase [Streptococcus suis ST3]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ++A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 511 LEAELHKRVIGQEEAISAVSRAI-----RRNQSGIRTGRRPIGSFMFLGPTGVGKTELAK 565

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 566 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 604


>gi|300718033|ref|YP_003742836.1| Chaperone protein [Erwinia billingiae Eb661]
 gi|299063869|emb|CAX60989.1| Chaperone protein [Erwinia billingiae Eb661]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L + +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQDLHQRVIGQNEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRLDMSEFMEKHSVSRLV 647


>gi|293411983|ref|ZP_06654706.1| ATP-dependent chaperone ClpB [Escherichia coli B354]
 gi|291468754|gb|EFF11245.1| ATP-dependent chaperone ClpB [Escherichia coli B354]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 651


>gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 619

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 11  EIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           E V      + G ++ K   + V   L+   + +Q+        +PK ILLVGP G GKT
Sbjct: 168 EKVDVTFDDVAGMENCKLELKEVVDYLKEPEQFRQIGGK-----VPKGILLVGPPGTGKT 222

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            ++R +A  AG  F  +  ++F E+ +VG    ++ RDL   A
Sbjct: 223 LLARAVAGEAGVNFFTISASQFIEM-FVGVGASRV-RDLFANA 263


>gi|297564379|ref|YP_003683352.1| ATP-dependent chaperone ClpB [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848828|gb|ADH70846.1| ATP-dependent chaperone ClpB [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 871

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ+DA  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 567 MEDELGRRLIGQKDAVAAVSDAV-----RRARAGISDPDRPTGSFLFLGPTGVGKTELAK 621

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 622 ALAEFLFDDERAIVRIDMSEYSEKHSVSRLV 652


>gi|170765528|ref|ZP_02900339.1| ATP-dependent chaperone protein ClpB [Escherichia albertii TW07627]
 gi|170124674|gb|EDS93605.1| ATP-dependent chaperone protein ClpB [Escherichia albertii TW07627]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|167550380|ref|ZP_02344137.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324553|gb|EDZ12392.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|241663929|ref|YP_002982289.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ralstonia
           pickettii 12D]
 gi|240865956|gb|ACS63617.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ralstonia
           pickettii 12D]
          Length = 762

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|118588511|ref|ZP_01545920.1| endopeptidase Clp ATP-binding chain B, clpB [Stappia aggregata IAM
           12614]
 gi|118439217|gb|EAV45849.1| endopeptidase Clp ATP-binding chain B, clpB [Stappia aggregata IAM
           12614]
          Length = 865

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 561 QMEDMLANRVIGQAEAIHAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA       +  ++++++++ E   V R
Sbjct: 615 TKALASFLFDDDSAMVRIDMSEYMEKHSVSR 645


>gi|92116299|ref|YP_576028.1| ATPase AAA-2 [Nitrobacter hamburgensis X14]
 gi|91799193|gb|ABE61568.1| ATPase AAA-2 [Nitrobacter hamburgensis X14]
          Length = 878

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 27/246 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 562 MEESLAARVVGQSEAVRAVSTAVR------RARAGLQDPNRPMGSFMFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + LA          ++++++++ E            GYVG +      E + R    V +
Sbjct: 616 KALAAYLFDNETAMVRIDMSEYMEKHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVL 675

Query: 112 NIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               E    +V        ++ R+ D         NT  +    L    + ++    +  
Sbjct: 676 FDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPEGEDTG 735

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +            +  + E+         +    + +Q    + + ++   ++D+
Sbjct: 736 AVREQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVEIQFARLQKLLEDRKIVLDL 795

Query: 231 DTVHRD 236
           DT  RD
Sbjct: 796 DTAARD 801


>gi|87309826|ref|ZP_01091960.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
 gi|87287590|gb|EAQ79490.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
          Length = 651

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G +  K   + +   LR   + Q+L        +PK +LL+GP G GKT ++R +A
Sbjct: 175 NDVAGLEGVKSDLQEIVDFLRKPEKFQRLGGQ-----VPKGVLLIGPPGTGKTLLARAIA 229

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF  V  ++F ++ +VG    ++ RDL   A
Sbjct: 230 GEAGVPFYSVSGSEFIQM-FVGVGASRV-RDLFKTA 263


>gi|325090251|gb|EGC43561.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 925

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 32/257 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ S L + ++GQ++A ++V+ A+R         + L +   P + L  GP+G GKT ++
Sbjct: 595 QMESHLSKIVVGQKEAVQSVSNAIR------LQRSGLSNPNSPPSFLFCGPSGTGKTLLT 648

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+ +++++ E            GYVG +    + + +      +  
Sbjct: 649 KALAEFLFDDSKSMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTEALRRRPFSIL- 707

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A       +L  L+         +  + ++ D +     +   +       
Sbjct: 708 -LFDEVEKAAKE-----VLTVLLQLMDDGRITDG-QGRIVDAKNCIVVMTSNLGAEFLQR 760

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVH 234
           S        S     +              +I   V   +  L R E  +++D  ++ + 
Sbjct: 761 STVANGQIDSTTKELVMGTLRNYFLPEFLNRISSIVI--FNTLTRREIRKIVDLRLEEIQ 818

Query: 235 RDSIQMVENYGIVFLDE 251
           +   Q   +  I   DE
Sbjct: 819 QRLEQNDRSVTIECTDE 835


>gi|317060742|ref|ZP_07925227.1| cell division protein ftsH [Fusobacterium sp. D12]
 gi|313686418|gb|EFS23253.1| cell division protein ftsH [Fusobacterium sp. D12]
          Length = 680

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 234 DVAGIDEAKHELEEVVEFLREPEKFKKIGARI-----PKGVLLLGSPGTGKTLLAKAVAG 288

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 289 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFAKARKNAPCIVFIDEIDAVGRK 340


>gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
 gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
          Length = 796

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGVGKTAISRRL 73
             + G  +A   +         R  L    R E     +P+ +LL GP G GKT ++R +
Sbjct: 168 DDVAGADEAVEELDEI------RDFLTDPSRYEALGAKIPRGVLLYGPPGTGKTLLARAV 221

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 AGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFKQA 256


>gi|238913425|ref|ZP_04657262.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|255084293|ref|XP_002508721.1| predicted protein [Micromonas sp. RCC299]
 gi|226523998|gb|ACO69979.1| predicted protein [Micromonas sp. RCC299]
          Length = 474

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIALR-----NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G   AK  +   +      ++++  +         +P   LLVGP G GKT +++ 
Sbjct: 153 DDVAGVDAAKAELVELVEMLKSADKYKGVKN-------RLPTGCLLVGPPGTGKTLLAKA 205

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  AG PF  V  ++F E+ +VGR   ++ R+L   A
Sbjct: 206 VAGEAGVPFFAVAASEFVEL-FVGRGAARV-RELFAEA 241


>gi|224437409|ref|ZP_03658378.1| ATP-dependent Clp protease ClpA [Helicobacter cinaedi CCUG 18818]
 gi|313143871|ref|ZP_07806064.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818]
 gi|313128902|gb|EFR46519.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           +I SEL + ++GQ+ A +A+A A+    +R              + L +GPTGVGKT  +
Sbjct: 563 DIESELTKSVVGQESAIKAIARAI----KR-NKAGLSDANRPIGSFLFLGPTGVGKTQCA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 618 KTLAEFLFDNAKSLVRIDMSEYMEKHAVSRLV 649


>gi|218509759|ref|ZP_03507637.1| ATPase [Rhizobium etli Brasil 5]
          Length = 476

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   IIGQ++A +AV+ A+     R                L +GPTGVGKT ++
Sbjct: 169 KMEEKLHERIIGQEEAIKAVSDAV-----RLARAGLRETRRPVATFLFLGPTGVGKTELA 223

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         ++++++++ E   V R V
Sbjct: 224 KALAQTVYGDEDAMVRIDMSEYRERHTVARLV 255


>gi|163739365|ref|ZP_02146776.1| hypothetical protein RGBS107_04916 [Phaeobacter gallaeciensis
           BS107]
 gi|161387435|gb|EDQ11793.1| hypothetical protein RGBS107_04916 [Phaeobacter gallaeciensis
           BS107]
          Length = 872

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L   +IGQ  A  AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEADLHGRVIGQDAAVTAVSNAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A       +  ++V++++F E   V R
Sbjct: 615 KAVADFLFDDDSAMVRVDMSEFMEKHAVAR 644


>gi|134099924|ref|YP_001105585.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008683|ref|ZP_06566656.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912547|emb|CAM02660.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 838

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R +  EL R +IGQ DA RA+A A+     R+             + L +GPTGVGKT +
Sbjct: 525 RNLEGELHRRVIGQDDAVRALARAV-----RRSRSGVGNANRPVGSFLFLGPTGVGKTEL 579

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           ++ LA          I++++++F E            GYVG
Sbjct: 580 AKALAETLFGDEDRMIRLDMSEFQERHNAARLIGAPPGYVG 620


>gi|187929803|ref|YP_001900290.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ralstonia
           pickettii 12J]
 gi|187726693|gb|ACD27858.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ralstonia
           pickettii 12J]
          Length = 762

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|15614742|ref|NP_243045.1| ATP-dependent proteinase [Bacillus halodurans C-125]
 gi|10174798|dbj|BAB05898.1| ATP-dependent proteinase [Bacillus halodurans C-125]
          Length = 711

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 20/103 (19%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +++ + L R +IGQ +A   VA A+    +R +  A L+ +  P + + VGPTGVGKT +
Sbjct: 414 KDLHNRLARQVIGQAEAVEKVAKAI----KRSR--AGLKPKNRPISFMFVGPTGVGKTEL 467

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA+         I++++++F E            GYVG +
Sbjct: 468 TKTLAQELFGSKEAMIRLDMSEFMEKHSVSKLIGSPPGYVGHD 510



 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 117/352 (33%), Gaps = 47/352 (13%)

Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERI-LDALVGKTATSNTREVFRKKLRDGEISD 162
            +L+   +N  R  + +          E+R  +     + A     +    +L    I  
Sbjct: 368 ENLLHKQMNENRAEKTEVTVADIQGLIEKRTGIPVRKLQKAEQTKMKDLHNRLARQVIGQ 427

Query: 163 KEIDIEVAD----------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
            E   +VA             +   +F   G   VG   L++  ++ +   ++  IR+ +
Sbjct: 428 AEAVEKVAKAIKRSRAGLKPKNRPISFMFVGPTGVGKTELTKTLAQELFGSKEAMIRLDM 487

Query: 213 QKCYPELMRDESDRLI---------DMDTVHRDSIQMVENYGIVFLDEFDK--------- 254
            +    + +    +LI         D      + ++  + Y I+ LDE +K         
Sbjct: 488 SE---FMEKHSVSKLIGSPPGYVGHDEGGQLTEQVRR-KPYSIILLDEIEKAHPDVQHMF 543

Query: 255 IVARDSGNGIGVSREGV--QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL 312
           +   + G         V  +  ++ +   + V  K  ++  +  +   + A  + +    
Sbjct: 544 LQILEDGRLTDSQGRAVSFKDTVIIMTSNAGVGVKKITVGFEKNVETQNKAGILEQINQY 603

Query: 313 L-PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
             PE   R    +    L + D   I+      ++    + +  + I L  +E +   L 
Sbjct: 604 FKPEFLNRLDAIIEFNHLTEQDLMRIV----DLMLQDLGDRLAEQDISLTVSEKAKAQLV 659

Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDAEYVRL 421
            +  +        GAR L+  ++  +ED        +     + +D + V+ 
Sbjct: 660 KIGSDR-----AFGARPLRRAIQDHVEDSITEKLIDEESINAIHVDYDVVQQ 706


>gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  R   L   L     PK  LLVGP G GKT +++ +A+ 
Sbjct: 188 IRGCDEAKKELEDIVEFLKDPERFYYLGGRL-----PKGALLVGPPGCGKTMLAKAIAKE 242

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ YVG    ++ R+L   A          +    A I  +E  +D
Sbjct: 243 AGVNFFYATGSEFDEM-YVGVGSRRV-RELFAAA----------KANSPALIFIDE--ID 288

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL G   +T  + +R    + L + +    +  I V      ++  + P      +    
Sbjct: 289 ALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIV------LAATNTPDALDKALTRPG 342

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM--VENYGIVFLDE 251
              + +       K R  V + Y  L + ++D  +    + R +      E   +V +  
Sbjct: 343 RFDTTISVDPPDMKGREEVLEVY--LNKVKADASVKAQEIARGTTGFTGAELSNLVNIAA 400

Query: 252 F 252
            
Sbjct: 401 I 401


>gi|125974293|ref|YP_001038203.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|256003489|ref|ZP_05428479.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|281418347|ref|ZP_06249367.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|125714518|gb|ABN53010.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
 gi|255992513|gb|EEU02605.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
 gi|281409749|gb|EFB40007.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
 gi|316941442|gb|ADU75476.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313]
          Length = 818

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A +A++ A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 502 KMEDILHKRVIGQDEAVKAISKAIR------RGRVGLKDPKRPVGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           S+ LA          I+++++++ E   V R V  
Sbjct: 556 SKALAEALFGEENAMIRIDMSEYMEKHSVSRLVGS 590


>gi|296271367|ref|YP_003653999.1| ATPase AAA-2 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296094154|gb|ADG90106.1| ATPase AAA-2 domain protein [Thermobispora bispora DSM 43833]
          Length = 834

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + IIGQ DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEEELHKRIIGQDDAIKALSRAIR------RTRAGLKDPRRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I ++++++ E   V R
Sbjct: 560 KALAEFLFGDEDALIMLDMSEYMEKHTVSR 589


>gi|293399913|ref|ZP_06644059.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306313|gb|EFE47556.1| ATP-dependent metalloprotease FtsH [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 677

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  + +   
Sbjct: 194 RIPKGMLMVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGTGASRVRDMFKKAQ 252

Query: 108 DVAINIVRESRRDEV 122
             A  IV     D V
Sbjct: 253 QHAPCIVFIDEIDAV 267


>gi|239629120|ref|ZP_04672151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519266|gb|EEQ59132.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 604

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 191 RIPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 248

Query: 111 INI 113
              
Sbjct: 249 KKN 251


>gi|223933536|ref|ZP_03625518.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
 gi|223897796|gb|EEF64175.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ++A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 511 LEAELHKRVIGQEEAISAVSRAI-----RRNQSGIRTGRRPIGSFMFLGPTGVGKTELAK 565

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 566 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 604


>gi|213620714|ref|ZP_03373497.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 736

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|222529809|ref|YP_002573691.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456656|gb|ACM60918.1| ATPase AAA-2 domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 829

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|205352156|ref|YP_002225957.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205271937|emb|CAR36781.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627200|gb|EGE33543.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|190574285|ref|YP_001972130.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Stenotrophomonas maltophilia K279a]
 gi|190012207|emb|CAQ45830.1| putative ATP-dependent Clp protease ATP-binding subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 761

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   I GQ  A   ++ A++              E    N L  GPTGVGKT +++
Sbjct: 456 LERNLKMVIFGQDPAIETLSSAIK-----LARSGLGNPEKPIGNFLFAGPTGVGKTEVTK 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 511 QLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHC 563


>gi|160935941|ref|ZP_02083315.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441183|gb|EDP18900.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 604

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 191 RIPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 248

Query: 111 INI 113
              
Sbjct: 249 KKN 251


>gi|16518974|gb|AAL25088.1|AF426837_1 Tobacco mosaic virus helicase domain-binding protein [Nicotiana
           tabacum]
          Length = 537

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 266 EDIAGLEKAKQALLEMVILPTKRKDLFTGLRRP--ARGLLLFGPPGTGKTMLAKAVASES 323

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A F  V  +  T   +VG   E++++ L  VAI+ 
Sbjct: 324 EATFFNVSASSLT-SKWVGEG-EKLVKTLFMVAISR 357


>gi|82523954|emb|CAI78765.1| endopeptidase clp atp-binding chain A [uncultured epsilon
           proteobacterium]
          Length = 725

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + ++L   +IGQ  A   V+ A++                   + L  GPTGVGKT ++ 
Sbjct: 433 LENDLKEKVIGQDTAVSEVSKAIK-----ISKAGLTPPNKPIASFLFSGPTGVGKTELAI 487

Query: 72  RLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
            L++  G  F + +++++ E            GYVG     ++ + +      
Sbjct: 488 SLSKTLGINFERFDMSEYMEKHALSRLVGAPPGYVGFEQGGLLTEAIKKHPYT 540


>gi|66823825|ref|XP_645267.1| peptidase M41, FtsH domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60473266|gb|EAL71212.1| peptidase M41, FtsH domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 844

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G  +AK  +   +      +R+++           +PK  +L GP G GKT +++ 
Sbjct: 354 KDVAGMDEAKEEIMEFVSFLKDPSRYKKLGA-------RIPKGAILSGPPGTGKTLLAKA 406

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  AG  F  +  + F E+ +VG    ++ RDL   A
Sbjct: 407 TAGEAGVNFYTISGSDFIEM-FVGVGPSRV-RDLFKEA 442


>gi|303256876|ref|ZP_07342890.1| ATP-dependent metalloprotease FtsH [Burkholderiales bacterium
           1_1_47]
 gi|302860367|gb|EFL83444.1| ATP-dependent metalloprotease FtsH [Burkholderiales bacterium
           1_1_47]
          Length = 664

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      +R++R           +P+ +LLVG  G GKT +++ +
Sbjct: 146 DVAGCDEAKEEVTEIVDYLKDPSRYQRLGG-------RIPRGVLLVGSPGTGKTLLAKAI 198

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           A  A  PF  +  + F E+ +VG    ++ RD+ + A   
Sbjct: 199 AGEAKVPFFTISGSDFVEM-FVGVGAARV-RDMFENAKKN 236


>gi|302872270|ref|YP_003840906.1| ATPase AAA-2 domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575129|gb|ADL42920.1| ATPase AAA-2 domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 829

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDAMIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|293370802|ref|ZP_06617348.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CMC 3f]
 gi|292634162|gb|EFF52705.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|240278992|gb|EER42498.1| heat shock protein CLPA [Ajellomyces capsulatus H143]
          Length = 925

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 32/257 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ S L + ++GQ++A ++V+ A+R         + L +   P + L  GP+G GKT ++
Sbjct: 595 QMESHLSKIVVGQKEAVQSVSNAIR------LQRSGLSNPNSPPSFLFCGPSGTGKTLLT 648

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+ +++++ E            GYVG +    + + +      +  
Sbjct: 649 KALAEFLFDDSKSMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTEALRRRPFSIL- 707

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A       +L  L+         +  + ++ D +     +   +       
Sbjct: 708 -LFDEVEKAAKE-----VLTVLLQLMDDGRITDG-QGRIVDAKNCIVVMTSNLGAEFLQR 760

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVH 234
           S        S     +              +I   V   +  L R E  +++D  ++ + 
Sbjct: 761 STVANGQIDSTTKELVMGTLRNYFLPEFLNRISSIVI--FNTLTRREIRKIVDLRLEEIQ 818

Query: 235 RDSIQMVENYGIVFLDE 251
           +   Q   +  I   DE
Sbjct: 819 QRLEQNDRSVTIECTDE 835


>gi|237713473|ref|ZP_04543954.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. D1]
 gi|262407259|ref|ZP_06083807.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_22]
 gi|294644668|ref|ZP_06722418.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CC 2a]
 gi|294809071|ref|ZP_06767793.1| ATP-dependent chaperone protein ClpB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298482679|ref|ZP_07000863.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. D22]
 gi|229446455|gb|EEO52246.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. D1]
 gi|262354067|gb|EEZ03159.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_22]
 gi|292640002|gb|EFF58270.1| ATP-dependent chaperone protein ClpB [Bacteroides ovatus SD CC 2a]
 gi|294443796|gb|EFG12541.1| ATP-dependent chaperone protein ClpB [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295087149|emb|CBK68672.1| ATP-dependent chaperone ClpB [Bacteroides xylanisolvens XB1A]
 gi|298271142|gb|EFI12719.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. D22]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|224119922|ref|XP_002318196.1| predicted protein [Populus trichocarpa]
 gi|222858869|gb|EEE96416.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A  A++ A+    +R ++     D      +L  GPTGVGKT +++
Sbjct: 203 LEEELRKRVIGQDEAVAAISRAV----KRSRVGLKDPD-RPIAAMLFCGPTGVGKTELTK 257

Query: 72  RLAR---LAGAPFIKVEVTKFTEIGYVGR 97
            LAR    + +  ++++++++ E   V +
Sbjct: 258 ALARNYFGSESAMLRLDMSEYMERHTVSK 286


>gi|160887374|ref|ZP_02068377.1| hypothetical protein BACOVA_05393 [Bacteroides ovatus ATCC 8483]
 gi|237722645|ref|ZP_04553126.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 2_2_4]
 gi|260171333|ref|ZP_05757745.1| endopeptidase Clp ATP-binding chain B [Bacteroides sp. D2]
 gi|299148949|ref|ZP_07042011.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_23]
 gi|315919644|ref|ZP_07915884.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107785|gb|EDO09530.1| hypothetical protein BACOVA_05393 [Bacteroides ovatus ATCC 8483]
 gi|229448455|gb|EEO54246.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 2_2_4]
 gi|298513710|gb|EFI37597.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 3_1_23]
 gi|313693519|gb|EFS30354.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|152988574|ref|YP_001345959.1| putative ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa PA7]
 gi|150963732|gb|ABR85757.1| probable ClpA/B protease ATP binding subunit [Pseudomonas
           aeruginosa PA7]
          Length = 932

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQQ+A  AV+ A+     R       +        L +GPTGVGKT +++
Sbjct: 586 MEERLHQRVIGQQEAITAVSDAV-----RLARAGLRQGSRPIATFLFLGPTGVGKTELAK 640

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA +        I+++++++ E   V R
Sbjct: 641 ALAEVVFGDEDAMIRIDMSEYMERHAVSR 669


>gi|52353449|gb|AAU44017.1| putative AAA-metalloprotease FtsH (fragment) [Oryza sativa Japonica
           Group]
          Length = 475

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + ++L A +     PK  LLVGP G GKT +++  A  +G PF+ +  + F E+ 
Sbjct: 7   LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 60

Query: 94  YVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +VG     V  + ++    A +I+     D +
Sbjct: 61  FVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 92


>gi|194337601|ref|YP_002019395.1| ATPase AAA-2 domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310078|gb|ACF44778.1| ATPase AAA-2 domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 846

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 88/234 (37%), Gaps = 41/234 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L + +IGQ +A + +  A+      Q+  A L+D   P  + + +GPTGVGKT ++
Sbjct: 522 MEADLTKEVIGQDEAIKKITKAI------QRTRAGLKDPSRPIGSFIFLGPTGVGKTELA 575

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 576 KALTRYMFDTEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 635

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + D
Sbjct: 636 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------MGRKVDFRNTVIIMTSNIGAKD 684

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I +F    G      +          +G  K ++ +++     +   E    ID
Sbjct: 685 IKSFGAGSGMGFTAPDD--------ATGNYKAMKSTIEDALKRVFNPEFLNRID 730


>gi|312383446|gb|EFR28534.1| hypothetical protein AND_03433 [Anopheles darlingi]
          Length = 604

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           + + G Q+AK+ V   +       R++R           +PK  LL+GP G GKT +++ 
Sbjct: 132 KDVAGLQEAKQEVMEFVDYLKSPGRYQRLGA-------KVPKGALLLGPPGCGKTLLAKA 184

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           +A  A  PF+ +  ++F E+  G     V  + ++    +  I+     D +  Q  
Sbjct: 185 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEAKKRSPCIIYVDEIDAIGRQRE 241


>gi|310823094|ref|YP_003955452.1| ATP-dependent chaperone protein clpb [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396166|gb|ADO73625.1| ATP-dependent chaperone protein ClpB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 876

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ  A  AV+ A+R      +  + L+D   P  + + +GPTGVGKT  
Sbjct: 563 KMEDRLSNRVIGQHSAIEAVSNAVR------RARSGLQDPNRPIGSFIFLGPTGVGKTET 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA       +  I+++++++ E   V R V
Sbjct: 617 AKALAEFLFDDDSSMIRIDMSEYMEKHSVARLV 649


>gi|256078931|ref|XP_002575746.1| suppressor of potassium transport defect 3 (skd3 protein)
           [Schistosoma mansoni]
 gi|238660992|emb|CAZ31980.1| suppressor of potassium transport defect 3 (skd3 protein), putative
           [Schistosoma mansoni]
          Length = 506

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + + L + I+GQ+ A R V+ A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 163 LENRLRKVIVGQEAAIRTVSAAIR------RKENGWYDEDHPLVFLFLGSSGIGKTELAK 216

Query: 72  RLARLAGAP----FIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           ++A          FI+++++++ E            GYVG      +   +    N
Sbjct: 217 QVAAYLHKDIKKGFIRIDMSEYQEKHEVSKFIGSPPGYVGHEEGGQLTRALAACPN 272


>gi|226226990|ref|YP_002761096.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gemmatimonas
           aurantiaca T-27]
 gi|226090181|dbj|BAH38626.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gemmatimonas
           aurantiaca T-27]
          Length = 835

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 21/111 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   ++GQ +A +A+A ++R      +  A L+D   P  + +  GPTGVGKT ++
Sbjct: 521 MEDELHGTVVGQDEAIKALARSIR------RSRAGLKDPRRPIGSFIFSGPTGVGKTELA 574

Query: 71  RRLARLAGA---PFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           R LA+   A     I+V+++++ E            GYVG      +   V
Sbjct: 575 RALAKFLFADTSALIRVDMSEYMEKFSVSRLIGAPPGYVGYEDSGTLTKAV 625


>gi|168015662|ref|XP_001760369.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688383|gb|EDQ74760.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 637

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYV 95
           + R  L    +   +P+ IL+ GP G GKT ++R +AR +G PF+     +F E   G  
Sbjct: 147 YMRNPLKYHNQKVKLPRGILISGPPGTGKTLLARAIARESGLPFVFASGAEFVESSTGNG 206

Query: 96  GRNVEQIIRDLVDVAINIVRESRRDE-----VREQASINAE-ERILDALVGKTATSN-TR 148
              +  I       A + V     D      V + A   A  +++L  L G+   ++  R
Sbjct: 207 SDKIFDIFFTARANAPSFVFIDEIDALAGKNVNDDAERRATFQQLLAELDGEPDDTDVNR 266

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
              R+ +     +++  +++ +       + +I  G   G      +F       R  K 
Sbjct: 267 WSLRQAVILICATNRPDELDESFMRPGRIDREIHIGLP-GEEERISIFGVHSSGKRLAKD 325

Query: 209 RMSVQKCYPELMRDESD--RLIDMDTVHRDSIQMVENYGIVFLDEFDK 254
               +  Y  L    +D   LI+   +        E      +D  DK
Sbjct: 326 IDFSKLVYRTLGYSGADIRNLINEAGIMAVRNGHDEITQQDLIDVLDK 373


>gi|152993533|ref|YP_001359254.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
 gi|310946765|sp|A6QBN8|FTSH_SULNB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|151425394|dbj|BAF72897.1| cell division protein FtsH [Sulfurovum sp. NBC37-1]
          Length = 671

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G ++AK   + +   L+   R  +L A +     PK +LLVGP G GKT +++ +A
Sbjct: 184 DDVQGVEEAKDEVKEIVDFLKFPERYIELGAKI-----PKGVLLVGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL   A
Sbjct: 239 GEASVPFFSVSGSGFIEM-FVGVGASRV-RDLFAQA 272


>gi|310946929|sp|Q4A5F0|FTSH_MYCS5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|144575198|gb|AAZ44021.2| cell division protein FtsH [Mycoplasma synoviae 53]
          Length = 664

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++    ++  +   +N  + QQ  A +     P  ILL GP G GKT +++  A 
Sbjct: 190 DIAGNKEPIEEISEVVDYLKNPGKYQQSGARM-----PHGILLGGPPGTGKTLLAKATAG 244

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
            A  PF  V  + F E+ +VG   +++ + + +   N       DE+  
Sbjct: 245 EANVPFYFVSASSFVEL-FVGMGAKRVRQVISEARKNSPAIIFIDELDA 292


>gi|16764307|ref|NP_459922.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992165|ref|ZP_02573263.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168240793|ref|ZP_02665725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450954|ref|YP_002044939.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197261994|ref|ZP_03162068.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|16419457|gb|AAL19881.1| ATP-binding subunit of serine protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194409258|gb|ACF69477.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197240249|gb|EDY22869.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205329659|gb|EDZ16423.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205340248|gb|EDZ27012.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|261246162|emb|CBG23966.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992674|gb|ACY87559.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157490|emb|CBW16980.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911935|dbj|BAJ35909.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223270|gb|EFX48339.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129212|gb|ADX16642.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987839|gb|AEF06822.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|325663695|ref|ZP_08152099.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087217|ref|ZP_08336287.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470188|gb|EGC73421.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408903|gb|EGG88364.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 609

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+   +  Q+ A +     PK +LLVGP G GKT +++ +A  AG PF  +  + F
Sbjct: 180 IVDFLKEPKKYIQVGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDF 234

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 235 VEM-FVGVGASRV-RDLFEEAKKN 256


>gi|315298640|gb|EFU57895.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 16-3]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 651


>gi|331684248|ref|ZP_08384840.1| ATP-dependent chaperone protein ClpB [Escherichia coli H299]
 gi|312947166|gb|ADR27993.1| protein disaggregation chaperone [Escherichia coli O83:H1 str. NRG
           857C]
 gi|331077863|gb|EGI49069.1| ATP-dependent chaperone protein ClpB [Escherichia coli H299]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|283782605|ref|YP_003373359.1| ATP-dependent chaperone protein ClpB [Gardnerella vaginalis 409-05]
 gi|283441971|gb|ADB14437.1| ATP-dependent chaperone protein ClpB [Gardnerella vaginalis 409-05]
          Length = 864

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ +A +A+A A+     R+             + L +GPTGVGKT +++
Sbjct: 568 MEKELSKRVVGQSEAIQAIADAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++++++++ E   V R
Sbjct: 623 ALADFLFDDERAMVRIDMSEYMEKASVSR 651


>gi|269793848|ref|YP_003313303.1| chaperone ATPase [Sanguibacter keddieii DSM 10542]
 gi|269096033|gb|ACZ20469.1| ATPase with chaperone activity, ATP-binding subunit [Sanguibacter
           keddieii DSM 10542]
          Length = 858

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 28/237 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + ++GQ  A + ++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 505 KMEDELHKRVVGQDIAIKGLSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTEL 558

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA          I++++++F+E            GYVG +       L +       
Sbjct: 559 AKALAEFLFGDEDALIQLDMSEFSEKHTVSRLFGSPPGYVGYD---EGGQLTEKVRRKPF 615

Query: 116 ESRRDEVREQASINAEERILDAL-VGKTATSNTREV-FRKKLRDGEISDKEIDIEVADTS 173
                +  E+A  +    +L  L  G+   S  R V F+  +     +    DI     +
Sbjct: 616 SVVLFDEVEKAHADIFNSLLQILEDGRLTDSQGRMVDFKNTVIIMTTNLGTRDIAKGVQT 675

Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              +  D           ++E   +        ++  ++   +P+L +DE  +++D+
Sbjct: 676 GFNAGGDTVTSYERMKAKVNEELKQHFRPEFLNRVDDTIV--FPQLTQDEIVKIVDL 730


>gi|255525864|ref|ZP_05392792.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510428|gb|EET86740.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 595

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 39/254 (15%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  + +   A +     PK I+L GP G GKT +++ LA 
Sbjct: 170 DVAGSEEAKENMQDIIEFLKNPKKFEDFGAKI-----PKGIILYGPPGTGKTLLAKALAG 224

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
             G+ FI    + F E  YVG    ++ R L + A               A I  +E  +
Sbjct: 225 ETGSEFIPTSGSYFIEK-YVGVGASRV-RKLFNKARKNSP----------AIIFIDE--I 270

Query: 136 DALVGK----TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN----------FDI 181
           DA+ GK      TS   +   + L + +  + + ++ V   ++ +            FD 
Sbjct: 271 DAIGGKRGSGKDTSEDAKTLNQLLVEMDGFNDKENVIVVAATNRLDMLDDALLRAGRFDR 330

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                +  LN      KV    +     + + +   + +      L ++  ++  SI  +
Sbjct: 331 HVMVGLPDLNARYKILKVHSKNKPLSPSVDLFQIAKQTVYMSGADLANV--INEASIYAI 388

Query: 242 -ENYGIVFLDEFDK 254
            ENY  + L+  DK
Sbjct: 389 KENYSEITLNHIDK 402


>gi|189500912|ref|YP_001960382.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
 gi|189496353|gb|ACE04901.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides
           BS1]
          Length = 659

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 13  VSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           VS     + G  +A   +   +    +  + QQ+   +     PK +LL+G  G GKT +
Sbjct: 205 VSVTFEDVAGVDEAVEELKETVEFLMSPEKFQQIGGKI-----PKGVLLLGSPGTGKTLL 259

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD----VAINIVRESRRDEVREQ 125
           ++ +A  A  PF  +    F E+ +VG    ++ RDL +     A  IV     D V   
Sbjct: 260 AKAIAGEAKVPFFSISGADFVEM-FVGVGAARV-RDLFETAKKNAPCIVFIDEIDAV--- 314

Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPGG 184
                  R      G      T      ++      D  I I   +    +      PG 
Sbjct: 315 ----GRSRGAGVGGGHDEREQTLNQLLVEMDGFTTKDNVILIAATNRPDVLDTALLRPGR 370

Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCY---------PELMRDESDRLIDMDTVHR 235
               I+         +   +    +  + +           P     +   LI+   +  
Sbjct: 371 FDRQIMIDKPDIRGRVAILKIHSRKTPLAEDVSIDKIAQSTPGFSGADLANLINEAALLA 430

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284
                 +     F D  DKI+       + +S E  Q+ +    E   V
Sbjct: 431 SREARRDISVSNFEDARDKILMGPERRSMYISDE--QKKITAYHESGHV 477


>gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 620

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + R   
Sbjct: 189 RIPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASRVRDLFRKAK 247

Query: 108 DVAINIVRESRRDEV 122
           + +  IV     D V
Sbjct: 248 EKSPCIVFIDEIDAV 262


>gi|71904411|ref|YP_281214.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS6180]
 gi|71803506|gb|AAX72859.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS6180]
          Length = 814

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|45554047|ref|NP_996339.1| CG2658, isoform B [Drosophila melanogaster]
 gi|21428334|gb|AAM49827.1| GH01006p [Drosophila melanogaster]
 gi|45446793|gb|AAS65257.1| CG2658, isoform B [Drosophila melanogaster]
 gi|220959764|gb|ACL92425.1| CG2658-PB [synthetic construct]
          Length = 504

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   ++  + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 339 LFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 393

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 394 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 445


>gi|77359882|ref|YP_339457.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874793|emb|CAI86014.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 858

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMEEKLHEKVIGQDEAVVAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA       +  +++++++F E   V R V
Sbjct: 615 TKALAGYMFDTESAMVRIDMSEFMEKHSVARLV 647


>gi|16759818|ref|NP_455435.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142409|ref|NP_805751.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213428021|ref|ZP_03360771.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213649851|ref|ZP_03379904.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213865353|ref|ZP_03387472.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289824999|ref|ZP_06544362.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25289913|pir||AI0609 ATP-dependent Clp protease ATP-binding chain ClpA [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502111|emb|CAD05347.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138039|gb|AAO69600.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 595

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G  +AK+ +      L++  R   L   L     PK  LLVGP G GKT +++ +A+ 
Sbjct: 126 IRGCDEAKKELEDIVEFLKDPERFYYLGGRL-----PKGALLVGPPGCGKTMLAKAIAKE 180

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG  F     ++F E+ YVG    ++ R+L   A          +    A I  +E  +D
Sbjct: 181 AGVNFFYATGSEFDEM-YVGVGSRRV-RELFAAA----------KANSPALIFIDE--ID 226

Query: 137 ALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL G   +T  + +R    + L + +    +  I V      ++  + P      +    
Sbjct: 227 ALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIV------LAATNTPDALDKALTRPG 280

Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM--VENYGIVFLDE 251
              + +       K R  V + Y  L + ++D  +    + R +      E   +V +  
Sbjct: 281 RFDTTISVDPPDMKGREEVLEVY--LNKVKADASVKAQEIARGTTGFTGAELSNLVNIAA 338

Query: 252 F 252
            
Sbjct: 339 I 339


>gi|308071007|ref|YP_003872612.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
           polymyxa E681]
 gi|305860286|gb|ADM72074.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
           polymyxa E681]
          Length = 814

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A +AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 502 MEELLHERVIGQDEAVKAVSRAIR------RARAGLKDPKRPMGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          I+++++++ E            GYVG
Sbjct: 556 RALAESMFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVG 595


>gi|256831690|ref|YP_003160417.1| ATPase AAA-2 domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256685221|gb|ACV08114.1| ATPase AAA-2 domain protein [Jonesia denitrificans DSM 20603]
          Length = 842

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + ++GQ  A +A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 506 MEAELHKRVVGQNRAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTELA 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F E            GYVG +       L +        
Sbjct: 560 KALAEYLFDDEDALIQLDMSEFGEKHTASRLFGSPPGYVGYD---EGGQLTEKVRRKPFS 616

Query: 117 SRRDEVREQASINAEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
               +  E+A  +    +L  L     T +      F+  +     +    D+       
Sbjct: 617 VVLFDEVEKAHADIFNSLLQILEEGRLTDSQGRVVDFKNTVIIMTTNLGSKDVAKGVQVG 676

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
              N D           ++E   +        ++   +   +P+L R+E  +++D+
Sbjct: 677 FNVNNDATTTYERMKSKVNEELKQHFRPEFLNRVDDVIV--FPQLSREEILKIVDL 730


>gi|302522782|ref|ZP_07275124.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|302431677|gb|EFL03493.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
          Length = 845

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ++A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 535 KLEEALHSRVVGQEEAVTAVAQAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELA 589

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 590 KALAELLFGDENRMVRFDMSEFQEKHTVSRLV 621


>gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 785

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|194742702|ref|XP_001953840.1| GF17034 [Drosophila ananassae]
 gi|229559924|sp|B3M301|SPAST_DROAN RecName: Full=Spastin
 gi|190626877|gb|EDV42401.1| GF17034 [Drosophila ananassae]
          Length = 770

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 496 DIAGQEVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 553

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 554 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 587


>gi|171317872|ref|ZP_02907049.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MEX-5]
 gi|171096941|gb|EDT41811.1| ATP-dependent chaperone ClpB [Burkholderia ambifaria MEX-5]
          Length = 865

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQHEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|119505584|ref|ZP_01627655.1| ATPase with chaperone activity, ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119458527|gb|EAW39631.1| ATPase with chaperone activity, ATP-binding subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + S L   ++GQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MESVLHERVVGQDEAVIAVANAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          +++++++F E   V R +      +   A   + E+ R  
Sbjct: 616 KALASFVFDSDQAMVRLDMSEFMEKHSVARLIGAPPGYVGYEAGGYLTEAVRRR 669


>gi|78066617|ref|YP_369386.1| AAA ATPase, ClpB [Burkholderia sp. 383]
 gi|77967362|gb|ABB08742.1| AAA ATPase, ClpB [Burkholderia sp. 383]
          Length = 865

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQHEAISAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALASFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|322515780|ref|ZP_08068725.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
 gi|322125742|gb|EFX97060.1| cell division protein FtsH [Streptococcus vestibularis ATCC 49124]
          Length = 659

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  + + L A +     PK +LL GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 203 LKNPRKYKALGARI-----PKGVLLEGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM- 256

Query: 94  YVGRNVEQIIRDLVDVAINIVRE 116
           +VG    ++ R L + A    R 
Sbjct: 257 FVGVGASRV-RSLFEDAKKAERA 278


>gi|315124494|ref|YP_004066498.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018216|gb|ADT66309.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 233

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I +     + G  + K  ++     L+N  + ++         MPK +L+VGP GVGKT 
Sbjct: 146 ISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFG-----VKMPKGVLMVGPPGVGKTL 200

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYV 95
           I++ +A  AG PF     + F EI YV
Sbjct: 201 IAKAVAGEAGVPFFYQSGSSFVEI-YV 226


>gi|300780363|ref|ZP_07090219.1| chaperone protein ClpB [Corynebacterium genitalium ATCC 33030]
 gi|300534473|gb|EFK55532.1| chaperone protein ClpB [Corynebacterium genitalium ATCC 33030]
          Length = 884

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L   ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MESVLGGRVVGQHEAVNAVSDAV-----RRSRAGIADPNRPIGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA       +  I+++++++ E   V R V      +   A   + E+ R  
Sbjct: 618 SLAEFLFDDESAMIRIDMSEYGEKHSVARLVGAPPGYVGFDAGGQLTEAVRRR 670


>gi|254521944|ref|ZP_05133999.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Stenotrophomonas sp. SKA14]
 gi|219719535|gb|EED38060.1| ATP-dependent Clp protease ATP-binding subunit ClpA
           [Stenotrophomonas sp. SKA14]
          Length = 761

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   I GQ  A   ++ A++              E    N L  GPTGVGKT +++
Sbjct: 456 LERNLKMVIFGQDPAIETLSSAIK-----LARSGLGNPEKPIGNFLFAGPTGVGKTEVTK 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 511 QLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHC 563


>gi|209694256|ref|YP_002262184.1| chaperone ClpB (heat-shock protein) [Aliivibrio salmonicida
           LFI1238]
 gi|208008207|emb|CAQ78351.1| chaperone ClpB (heat-shock protein) [Aliivibrio salmonicida
           LFI1238]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 KMEAMLHHRVIGQDEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 615 CKSLANFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|199598008|ref|ZP_03211432.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus rhamnosus HN001]
 gi|199591098|gb|EDY99180.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus rhamnosus HN001]
          Length = 699

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 390 KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 444

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 445 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 504

Query: 115 RESRRDE 121
                ++
Sbjct: 505 LLDEIEK 511



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVRE----------QASINAEERIL--DALVGKTAT 144
            ++ +   +L D  I  V E   +++ E          +A   A+ + L  D        
Sbjct: 344 EDMAKKQSNLPDNEIPTVTEKDMEKIVEEKTNIPVGELKAQEQAQLKNLASDLEQHVIGQ 403

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   +   + +R          I    T   I +F   G   VG   L++  +K +    
Sbjct: 404 NEAVDKVARAIRRNR-------IGFNKTGRPIGSFLFVGPTGVGKTELAKQLAKELFGSE 456

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK-- 254
              IR  + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K  
Sbjct: 457 DAMIRFDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAH 513

Query: 255 -------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +   D G         V      ++  S+  +     N      ++     V 
Sbjct: 514 PDVMNMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGATLSGKTHSVL 573

Query: 308 RPAD--LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILD 361
                   PE   RF   V  K L+K D   I++    DT +NL  Q        G+ + 
Sbjct: 574 DQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNLKSQ--------GLTIH 625

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T+   + L  +          +GAR L+ V++  +ED
Sbjct: 626 VTDPVKEKLVTLGY-----NPSMGARPLRRVIQEQIED 658


>gi|160947241|ref|ZP_02094408.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270]
 gi|158446375|gb|EDP23370.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270]
          Length = 651

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +L+VGP G GKT +SR +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 192 RIPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 249

Query: 111 INI 113
              
Sbjct: 250 KKN 252


>gi|153807767|ref|ZP_01960435.1| hypothetical protein BACCAC_02050 [Bacteroides caccae ATCC 43185]
 gi|149129376|gb|EDM20590.1| hypothetical protein BACCAC_02050 [Bacteroides caccae ATCC 43185]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|49474300|ref|YP_032342.1| endopeptidase Clp ATP-binding chain a [Bartonella quintana str.
           Toulouse]
 gi|49239804|emb|CAF26194.1| Endopeptidase clp ATP-binding chain a [Bartonella quintana str.
           Toulouse]
          Length = 783

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  EL   + GQ  A  A+  +++              +    + L  GPTGVGKT ++
Sbjct: 456 KLERELKHVVYGQDQAISALVSSIK-----LARAGLRESDKPIGSYLFSGPTGVGKTEVA 510

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           ++LA   G   ++ +++++ E            GY+G +   ++ D VD   +
Sbjct: 511 KQLASSLGIELLRFDMSEYMERHTVARLIGAPPGYIGFDQGGLLTDAVDQRPH 563


>gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae]
          Length = 824

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      L +  R + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 171 DVAGADEAIDELHEIKDFLEDPTRYEALGAKI-----PRGVLLYGPPGTGKTLLARAVAG 225

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 226 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 258


>gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 622

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
            P+ ILL GP G GKT +++ +A   G  FI+V  T+   +G +    E  IRDL  +A 
Sbjct: 74  PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATEL--VGGMSGESESKIRDLFQLAS 131

Query: 111 ------INIVRESRRDEVREQASINAEERI-------LDALVGKTA------TSNTREVF 151
                 + I         R+ A    E RI       LD L            +N  +  
Sbjct: 132 QRAPALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSL 191

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              LR     D+EI + +   S      D   
Sbjct: 192 DPALRRAGRFDREIALGIPSESQRRQILDKMM 223



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 47/257 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            E+ +EL R ++G        A+   + ++             P  ILL GP G GKT  
Sbjct: 352 EEVHNELKRLVVG--------AVQYPSLYK-------KFGVDTPAGILLYGPPGCGKTYC 396

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           ++ LA    A FI V+  +     YVG   E+ +R L   A            R  A   
Sbjct: 397 AKALANECKANFIAVKGPQLLNK-YVGE-AERAVRQLFMRA------------RNSAPCV 442

Query: 130 AEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                LDAL  K    +S    +  + L + +  D   D+ V   ++     D P     
Sbjct: 443 IFFDELDALAPKRSEDSSGVSRIVNQLLTELDGMDVRKDVFVVAATNRPDCID-PAMLRP 501

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS---------- 237
           G L+            R   ++   ++    L        ++++ + R +          
Sbjct: 502 GRLDRLISVDLPNSDARVDILKTICKRQKVPLADS-----VNLEKIARSAQVDGFSGADL 556

Query: 238 IQMVENYGIVFLDEFDK 254
             +V+   +  LDE  K
Sbjct: 557 TALVKEASVRALDEIVK 573


>gi|297182614|gb|ADI18773.1| hypothetical protein [uncultured gamma proteobacterium
           HF4000_36I10]
          Length = 870

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL R ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 566 MEDELHRRVVGQDEAVVAVSHAVR------RSRAGLSDPNRPNGSFLFMGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 620 KALATFLYDSEEAMVRIDMSEFMEKHSVAR 649


>gi|239994971|ref|ZP_04715495.1| ATP-dependent specificity subunit of clpA-clpP serine protease
           [Alteromonas macleodii ATCC 27126]
          Length = 347

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A   +  A+          + L  E  P  + L  GPTGVGKT 
Sbjct: 40  KNLGRNLKMVVFGQDKAIETLNDAI------LLSRSGLGAEAKPIGSFLFAGPTGVGKTE 93

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++++LA++ G   ++ +++++ E            GYVG +   ++ D V      
Sbjct: 94  VTQQLAKIMGVELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAVIKNPYS 149


>gi|239985969|ref|ZP_04706633.1| putative chaperone [Streptomyces roseosporus NRRL 11379]
          Length = 840

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           I+GQ +A  AV+ A+R      +  A + D   P  + L +GPTGVGKT +++ LA L  
Sbjct: 536 IVGQDEAVTAVSEAVR------RNRAGMGDPNRPVGSFLFLGPTGVGKTELAKTLAELLF 589

Query: 78  --GAPFIKVEVTKFTEIGYVGRNV 99
                 I+ ++++F E   V R V
Sbjct: 590 GQDDRMIRFDMSEFQEKHTVARLV 613


>gi|239939480|ref|ZP_04691417.1| putative chaperone [Streptomyces roseosporus NRRL 15998]
 gi|291442910|ref|ZP_06582300.1| chaperone [Streptomyces roseosporus NRRL 15998]
 gi|291345857|gb|EFE72761.1| chaperone [Streptomyces roseosporus NRRL 15998]
          Length = 842

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 10/84 (11%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           I+GQ +A  AV+ A+R      +  A + D   P  + L +GPTGVGKT +++ LA L  
Sbjct: 538 IVGQDEAVTAVSEAVR------RNRAGMGDPNRPVGSFLFLGPTGVGKTELAKTLAELLF 591

Query: 78  --GAPFIKVEVTKFTEIGYVGRNV 99
                 I+ ++++F E   V R V
Sbjct: 592 GQDDRMIRFDMSEFQEKHTVARLV 615


>gi|224085219|ref|XP_002307519.1| predicted protein [Populus trichocarpa]
 gi|222856968|gb|EEE94515.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL +YI+GQ++A +AV+ A+     R+             + L  GPTGVGKT +++
Sbjct: 330 MEAELHKYIVGQEEAVKAVSHAI-----RRARVGTKDPNKPIASFLFTGPTGVGKTELAK 384

Query: 72  RLARL---AGAPFIKVEVTKFTEIGYVGR 97
            LA     +    ++++++++ E   V +
Sbjct: 385 ALAVEYFGSKEAVVRIDMSEYMEKHTVSK 413


>gi|213052428|ref|ZP_03345306.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 695

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|146311057|ref|YP_001176131.1| ATP-dependent Clp protease ATP-binding subunit [Enterobacter sp.
           638]
 gi|145317933|gb|ABP60080.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Enterobacter
           sp. 638]
          Length = 759

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + R + + L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 449 TLRTLGNRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 503

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 559


>gi|157130112|ref|XP_001655566.1| spastin [Aedes aegypti]
 gi|108884449|gb|EAT48674.1| spastin [Aedes aegypti]
          Length = 338

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A   
Sbjct: 114 QDIAGQEVAKQALQEMVILPSVRPELFTGLRTP--AKGLLLFGPPGNGKTLLARAVATEC 171

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 172 SATFFSISAATLT-SKYVGDG-EKLVRALFAVA 202


>gi|15675834|ref|NP_270008.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes M1 GAS]
 gi|71911576|ref|YP_283126.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS5005]
 gi|13623064|gb|AAK34729.1| putative endopeptidase Clp ATP-binding chain C [Streptococcus
           pyogenes M1 GAS]
 gi|71854358|gb|AAZ52381.1| negative regulator of genetic competence [Streptococcus pyogenes
           MGAS5005]
          Length = 814

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|260768160|ref|ZP_05877094.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           furnissii CIP 102972]
 gi|260616190|gb|EEX41375.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           furnissii CIP 102972]
          Length = 731

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD+     + GQ +A   ++ +++             D     + L  GPTG
Sbjct: 422 SDKDILKNLDQKMKMLVFGQDNAIDVLSESIK-----LTRAGLGSDNRPVGSFLFAGPTG 476

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 477 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 536

Query: 113 I 113
            
Sbjct: 537 S 537


>gi|238602743|ref|XP_002395765.1| hypothetical protein MPER_04127 [Moniliophthora perniciosa FA553]
 gi|215467050|gb|EEB96695.1| hypothetical protein MPER_04127 [Moniliophthora perniciosa FA553]
          Length = 387

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + ++G  +AK  +   ++   +       L  ++ P+  +L GP G GKT +++  A  A
Sbjct: 130 KDVVGMDEAKEEIMEFVQ-FLKEPSKYEKLGAKI-PRGAILSGPPGTGKTLLAKAAAGEA 187

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  V  ++F ++ +VG    ++ RDL   A
Sbjct: 188 SVPFWSVSGSEFVKM-FVGVGSSRV-RDLFASA 218


>gi|113869006|ref|YP_727495.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
 gi|113527782|emb|CAJ94127.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
          Length = 764

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LDRDLKSVVFGQDPAIEALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   ++ +++++ E            GYVG +   ++ + V    + 
Sbjct: 508 QLAFIMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 560


>gi|94993294|ref|YP_601393.1| negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS2096]
 gi|94546802|gb|ABF36849.1| Negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS2096]
          Length = 472

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 168 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 222

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 223 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 263


>gi|85375029|ref|YP_459091.1| ATP-dependent Zn protease [Erythrobacter litoralis HTCC2594]
 gi|84788112|gb|ABC64294.1| ATP-dependent Zn protease [Erythrobacter litoralis HTCC2594]
          Length = 652

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +A+  +   +    +  Q  + L  ++ PK  LLVG  G GKT ++R +A  A
Sbjct: 171 EDVAGIDEAREELEEIVE-FLKDPQRFSKLGGQI-PKGALLVGSPGTGKTLLARAIAGEA 228

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 229 GVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 275


>gi|42522811|ref|NP_968191.1| ATP-dependent Clp protease subunit [Bdellovibrio bacteriovorus
           HD100]
 gi|39574007|emb|CAE79184.1| ATP-dependent Clp protease subunit [Bdellovibrio bacteriovorus
           HD100]
          Length = 776

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           R++  +L   I GQ +A   +   ++  + R       R      + L  GPTGVGKT +
Sbjct: 463 RDLDKKLKALIFGQDEAIDRLVANIK--YAR---SGLGRPNKPIGSFLFTGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
            R+LA + G  F + +++++ E   V R V
Sbjct: 518 CRQLATIMGVHFERFDMSEYMEKHAVARMV 547


>gi|323496572|ref|ZP_08101625.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio sinaloensis
           DSM 21326]
 gi|323318318|gb|EGA71276.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio sinaloensis
           DSM 21326]
          Length = 756

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 22/122 (18%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62
           S +E++  LD      + GQ DA   ++ A++         A L  E  P  + L  GPT
Sbjct: 447 SDKEVLQNLDEKMKMLVFGQDDAIDVLSEAIK------LTRAGLGAENKPVGSFLFAGPT 500

Query: 63  GVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAI 111
           GVGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    
Sbjct: 501 GVGKTEVTVQLSKLMGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHP 560

Query: 112 NI 113
           + 
Sbjct: 561 HS 562


>gi|297181224|gb|ADI17418.1| hypothetical protein [uncultured Rhodospirillales bacterium
           HF0070_31K06]
          Length = 860

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 21/111 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A  A++ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 565 MEESLSERVIGQKEALVAISNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           + LA          +++++++F E            GYVG +   ++ + V
Sbjct: 619 KALAGFLFDDDQAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGMLTEAV 669


>gi|303232427|ref|ZP_07319119.1| putative negative regulator of genetic competence ClpC/MecB
           [Atopobium vaginae PB189-T1-4]
 gi|302481511|gb|EFL44579.1| putative negative regulator of genetic competence ClpC/MecB
           [Atopobium vaginae PB189-T1-4]
          Length = 904

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72
            EL ++I+GQ++A + V+  +R      +  + L+D   P    + +GP+GVGKT +++ 
Sbjct: 543 EELHKHIVGQEEAVKKVSACIR------RSRSPLKDPRRPGGSFMFLGPSGVGKTELAKT 596

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           LA          I  +++++ E   V + V
Sbjct: 597 LAEFLFGTKDALINFDMSEYMEKHEVSKLV 626



 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   +L K + R I+T     +I    + +    + ++ T  + D +A  
Sbjct: 739 PEFINRIDEIVVFSALKKDELRKIVTM----MIGDLNKRLAPHEMEIELTPAACDYIAKE 794

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
                 T    GAR L+  ++R++ED
Sbjct: 795 -----GTDPIYGARPLRRSIQRLIED 815


>gi|305680258|ref|ZP_07403066.1| ATP-dependent chaperone protein ClpB [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659789|gb|EFM49288.1| ATP-dependent chaperone protein ClpB [Corynebacterium matruchotii
           ATCC 14266]
          Length = 848

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + ++GQ DA +AVA A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEAELGKRVVGQLDAVQAVADAVR------RARAGVADPNRPMGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFMFDDERAMVRIDMSEYAEKHAVARLV 648


>gi|229825873|ref|ZP_04451942.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
 gi|229789893|gb|EEP26007.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC
           49176]
          Length = 611

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +   + A +     PK ++L GP G GKT +++ +A  AG PF  +  + F
Sbjct: 184 IVDFLKNPAKYNGIGARI-----PKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 238

Query: 90  TEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
            E+ +VG     V  +  D    A  IV     D V
Sbjct: 239 VEM-FVGVGASRVRDLFSDAKKNAPCIVFIDEIDAV 273


>gi|225560240|gb|EEH08522.1| heat shock protein CLPA [Ajellomyces capsulatus G186AR]
          Length = 925

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 32/257 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ S L + ++GQ++A ++V+ A+R         + L +   P + L  GP+G GKT ++
Sbjct: 595 QMESHLSKIVVGQKEAVQSVSNAIR------LQRSGLSNPNSPPSFLFCGPSGTGKTLLT 648

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I+ +++++ E            GYVG +    + + +      +  
Sbjct: 649 KALAEFLFDDSKSMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTEALRRRPFSIL- 707

Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              DEV + A       +L  L+         +  + ++ D +     +   +       
Sbjct: 708 -LFDEVEKAAKE-----VLTVLLQLMDDGRITDG-QGRIVDAKNCIVVMTSNLGAEFLQR 760

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID--MDTVH 234
           S        S     +              +I   V   +  L R E  +++D  ++ + 
Sbjct: 761 STVANGQIDSTTKELVMGTLRNYFLPEFLNRISSIVI--FNTLTRREIRKIVDLRLEEIQ 818

Query: 235 RDSIQMVENYGIVFLDE 251
           +   Q   +  I   DE
Sbjct: 819 QRLEQNDRSVTIECTDE 835


>gi|212636672|ref|YP_002313197.1| AAA ATPase [Shewanella piezotolerans WP3]
 gi|212558156|gb|ACJ30610.1| AAA ATPase, central region:Clp, N terminal [Shewanella
           piezotolerans WP3]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  +V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMEDALHERVIGQNEAVDSVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA+      +  +++++++F E   V R V
Sbjct: 615 CKSLAKFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|297193119|ref|ZP_06910517.1| chaperone clpB 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721293|gb|EDY65201.1| chaperone clpB 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 864

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 569 MEQELGRRLIGQSEAVQAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 623

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 624 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 654


>gi|167759637|ref|ZP_02431764.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
 gi|167662763|gb|EDS06893.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704]
          Length = 614

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 198 RIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFEEA 255

Query: 111 INI 113
              
Sbjct: 256 KKN 258


>gi|94995253|ref|YP_603351.1| Negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS10750]
 gi|94548761|gb|ABF38807.1| Negative regulator of genetic competence clpC/mecB [Streptococcus
           pyogenes MGAS10750]
          Length = 814

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     A  I+ +++++ E            GYVG +
Sbjct: 565 ALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|42518369|ref|NP_964299.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
 gi|41582654|gb|AAS08265.1| cell division protein FtsH-like protein [Lactobacillus johnsonii
           NCC 533]
          Length = 708

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 223 RIPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETA 280

Query: 111 INI 113
              
Sbjct: 281 KKN 283


>gi|22537967|ref|NP_688818.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25011908|ref|NP_736303.1| hypothetical protein gbs1869 [Streptococcus agalactiae NEM316]
 gi|76797865|ref|ZP_00780128.1| ATP-dependent Clp proteinase, ATP-binding chain [Streptococcus
           agalactiae 18RS21]
 gi|77414265|ref|ZP_00790425.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 515]
 gi|22534867|gb|AAN00691.1|AE014274_21 ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 2603V/R]
 gi|24413450|emb|CAD47528.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586768|gb|EAO63263.1| ATP-dependent Clp proteinase, ATP-binding chain [Streptococcus
           agalactiae 18RS21]
 gi|77159681|gb|EAO70832.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae 515]
          Length = 815

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEKELHKRVIGQDDAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAEVLFDDESALIRFDMSEYMEKFAASHLNGAPPGYVGYD 604


>gi|331701915|ref|YP_004398874.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129258|gb|AEB73811.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL
           B-30929]
          Length = 711

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 222 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 278


>gi|302793610|ref|XP_002978570.1| hypothetical protein SELMODRAFT_176984 [Selaginella moellendorffii]
 gi|300153919|gb|EFJ20556.1| hypothetical protein SELMODRAFT_176984 [Selaginella moellendorffii]
          Length = 870

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ  A +AVA A+R      +  A L D   P  + + +GPTGVGKT +
Sbjct: 557 QLDDHLHKRLIGQDPAVKAVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTEL 610

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++ +++++ E   V R
Sbjct: 611 AKALAEYLFDTDKALLRFDMSEYMEKHAVSR 641


>gi|295132678|ref|YP_003583354.1| cell division protease FtsH [Zunongwangia profunda SM-A87]
 gi|294980693|gb|ADF51158.1| cell division protease FtsH [Zunongwangia profunda SM-A87]
          Length = 681

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + G + AK  V   + +  ++ +    L  ++ PK  LLVGP G GKT +++ +A  A  
Sbjct: 199 VAGLEGAKEEVQEIV-DFLKQPEKYTSLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAKV 256

Query: 80  PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 257 PFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 285


>gi|257869295|ref|ZP_05648948.1| chaperone protein clpB [Enterococcus gallinarum EG2]
 gi|257803459|gb|EEV32281.1| chaperone protein clpB [Enterococcus gallinarum EG2]
          Length = 867

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +
Sbjct: 564 KLNETLHQRVIGQDEAVDAVSDAV------IRSRAGLQDPNRPLGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          ++++++++ E   V R V
Sbjct: 618 AKALAVNLFDSEDHMVRIDMSEYMEKHSVSRLV 650


>gi|229824539|ref|ZP_04450608.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
 gi|229785910|gb|EEP22024.1| hypothetical protein GCWU000282_01883 [Catonella morbi ATCC 51271]
          Length = 668

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +    L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 175 DVAGAEEEKQEL-VEVVEFLKDPKRFTKLGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 232

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  ++F E+ +VG    ++ RDL + A   
Sbjct: 233 VPFFTMSGSEFVEM-FVGVGASRV-RDLFENAKKN 265


>gi|255505515|ref|ZP_05346578.3| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255267342|gb|EET60547.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 570

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G Q+ K     +   L++  +  ++ A +     PK ++LVG  G GKT +++ +A
Sbjct: 129 KDVAGLQEEKEDLQELVDFLKDPQKYTKMGARI-----PKGVILVGSPGTGKTLLAKAVA 183

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +  +    A  IV     D V
Sbjct: 184 GEAGVPFFSISGSDFVEM-FVGVGASRVRDLFAEAKQNAPCIVFIDEIDAV 233


>gi|294656849|ref|XP_459165.2| DEHA2D15664p [Debaryomyces hansenii CBS767]
 gi|199431787|emb|CAG87336.2| DEHA2D15664p [Debaryomyces hansenii]
          Length = 769

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
           + + G +++K  +   +    +  Q P         +P+  +L G  G GKT +++  A 
Sbjct: 273 KDVAGCEESKEEIMEFV----KFLQDPTKYEKLGAKIPRGAILSGSPGTGKTLLAKATAG 328

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF+ V  ++F E+ +VG    ++ RDL   A
Sbjct: 329 EAGVPFLSVSGSEFVEM-FVGVGASRV-RDLFKTA 361


>gi|193213487|ref|YP_001999440.1| ATPase AAA-2 domain-containing protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086964|gb|ACF12240.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 849

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 99/254 (38%), Gaps = 44/254 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A + +  A+      Q+  A L+D + P  + + +GPTGVGKT ++
Sbjct: 523 MEAELKKEVIGQDEAIKKITKAI------QRTRAGLKDPMRPIGSFIFLGPTGVGKTELA 576

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 577 KALTRYLFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 636

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + +
Sbjct: 637 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------LGRKVDFRNTIIIMTSNIGAKE 685

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I +F    G S               +G  K ++ +++     +   E    ID DT+  
Sbjct: 686 IKSFGTGMGFSAPED----------TTGNYKAMKSTIEDALKRVFNPEFLNRID-DTIVF 734

Query: 236 DSIQMVENYGIVFL 249
             ++  + + I+ +
Sbjct: 735 HQLEKSDIFQIIDI 748


>gi|164430964|gb|ABY55754.1| spastin [Drosophila silvestris]
          Length = 367

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 93  DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 150

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 151 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 184


>gi|109947137|ref|YP_664365.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
 gi|109714358|emb|CAJ99366.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
          Length = 550

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVSEVKEELLEVIDYLKNPRKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEAKVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALDYLKIAKICVGFSGAMLATLINESVLNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q  E      L+  DKI 
Sbjct: 379 KHQRTEITHSDILEVKDKIA 398


>gi|294669676|ref|ZP_06734743.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308589|gb|EFE49832.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 671

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 18  RYIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             + G  ++K  V   +      NR++            MP+ ILL G  G GKT +++ 
Sbjct: 160 DDVAGCDESKEEVQEIVDYLKAPNRYQSLGG-------RMPRGILLAGSPGTGKTLLAKA 212

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 213 IAGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 264


>gi|242240264|ref|YP_002988445.1| protein disaggregation chaperone [Dickeya dadantii Ech703]
 gi|242132321|gb|ACS86623.1| ATP-dependent chaperone ClpB [Dickeya dadantii Ech703]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  E+ + +IGQ +A  AVA ++R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQEMHQRVIGQNEAVEAVANSIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLAAFLFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|269926323|ref|YP_003322946.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798]
 gi|269789983|gb|ACZ42124.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798]
          Length = 867

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A  AVA A+R         A L+D   P  + L +GPTGVGKT  +
Sbjct: 564 MEEYLRQRVVGQDEAISAVANAIR------AARAGLQDPNRPIGSFLFLGPTGVGKTETA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 618 RALAEFLFDDERAMVRIDMSEYGEKHSVAR 647


>gi|167742526|ref|ZP_02415300.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14]
          Length = 666

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)

Query: 20  IIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           I G  +AK  +   +       R++R           +PK +L+VG  G GKT +++ +A
Sbjct: 172 IAGIDEAKAELQQIVAFLRAPARYQRLGG-------KIPKGVLIVGAPGTGKTLLAKAVA 224

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     + F E+ +VG    ++ RDL + A
Sbjct: 225 GEAGVPFFSTSGSSFVEM-FVGVGAARV-RDLFEQA 258


>gi|163786153|ref|ZP_02180601.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
 gi|159878013|gb|EDP72069.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteriales
           bacterium ALC-1]
          Length = 647

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G + AK  V   + +  +  +    L  ++ PK  LLVGP G GKT +++ +A  A
Sbjct: 196 KDVAGLEGAKEEVQEIV-DFLKFPEKYTALGGKI-PKGALLVGPPGTGKTLLAKAVAGEA 253

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 254 KVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 284


>gi|157692042|ref|YP_001486504.1| endopeptidase ClpE [Bacillus pumilus SAFR-032]
 gi|157680800|gb|ABV61944.1| S14 family endopeptidase ClpE [Bacillus pumilus SAFR-032]
          Length = 700

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +EI   L   +IGQ+ A   VA A+    +R +     +      + L VGPTGVGKT +
Sbjct: 401 KEIDVRLKARVIGQEHAVEKVAKAV----KRSRAGLKSKH-RPTGSFLFVGPTGVGKTEL 455

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           S+ LA          I+++++++ E            GYVG +
Sbjct: 456 SKTLAEELFGSREAIIRLDMSEYMEKHSVSKLIGSPPGYVGHD 498



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 41/261 (15%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +        +F   G   VG   LS+  ++ +   R+  IR+ + +    + +    +LI
Sbjct: 432 LKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSREAIIRLDMSE---YMEKHSVSKLI 488

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     +          + Y I+ LDE +K         +   + G         V
Sbjct: 489 GSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 548

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL--------PEIQGRFPVR 323
                 ++  S+     GS +    +   S          L+        PE   RF   
Sbjct: 549 SFKDTVIIMTSNA----GSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSI 604

Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383
           +   SL++ D   I+    + L  Q    +K + + +  T+++ + +A++  +       
Sbjct: 605 IQFDSLDRDDLVKIVDLLLNELSAQ----LKEQNLTVHVTKEAKEKIAELGYH-----PA 655

Query: 384 IGARRLQTVMERVLEDISFSA 404
            GAR L+  ++  +ED     
Sbjct: 656 FGARPLRRTIQEHVEDQMTEI 676


>gi|50308283|ref|XP_454142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643277|emb|CAG99229.1| KLLA0E04379p [Kluyveromyces lactis]
          Length = 729

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 436 EIVVHGDEVYWDDIAGLETAKNSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 493

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  VA
Sbjct: 494 TMLARAVATESKSTFFSISASSLT-SKYLGES-EKLVRALFAVA 535


>gi|318059835|ref|ZP_07978558.1| chaperone [Streptomyces sp. SA3_actG]
          Length = 845

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ++A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 535 KLEEALHSRVVGQEEAVTAVAQAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELA 589

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 590 KALAELLFGDENRMVRFDMSEFQEKHTVSRLV 621


>gi|331658742|ref|ZP_08359684.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA206]
 gi|331053324|gb|EGI25353.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA206]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 647


>gi|299065939|emb|CBJ37120.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ralstonia
           solanacearum CMR15]
          Length = 762

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQDPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + +    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKRPHC 560


>gi|289423522|ref|ZP_06425323.1| ATP-dependent chaperone protein ClpB [Peptostreptococcus anaerobius
           653-L]
 gi|289156024|gb|EFD04688.1| ATP-dependent chaperone protein ClpB [Peptostreptococcus anaerobius
           653-L]
          Length = 864

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 28/230 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +  RAV+ A+       +  A L D+  P  + + +GPTGVGKT ++
Sbjct: 571 LEDKLHERVIGQDEPVRAVSDAI------LRSRAGLSDQNRPLGSFIFLGPTGVGKTELA 624

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           + LAR         I+++++++ E   V R V      +       + E+ R +      
Sbjct: 625 KTLARELFDSEDSIIRLDMSEYMEKHSVSRLVGPPPGYVGYEEGGQLTEAVRRKPYSVIL 684

Query: 124 ----EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
               E+A  +     L  L     T N           G+  D +  + +  ++      
Sbjct: 685 FDEIEKAHDDVFNMFLQILDEGRLTDN----------KGKTVDFKNTLIIMTSNIGSDIL 734

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               G     +  S +         +   R+     +  LM++E  ++ID
Sbjct: 735 LESKGKIDESVQKSVMDIMKFKFKPEFLNRVDDIIMFKPLMKEEVKKIID 784


>gi|237752678|ref|ZP_04583158.1| endopeptidase subunit Clp ATP-binding A [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376167|gb|EEO26258.1| endopeptidase subunit Clp ATP-binding A [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 756

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   I GQ +A   V  AL    +R +      +     + L  GP+GVGKT +++
Sbjct: 447 LEKHLKSRIFGQDNAIVEVVSAL----KRNKAGLGAPN-KPIGSFLFSGPSGVGKTELAK 501

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
            LA+     F +++++++ E            GYVG     I+ +++    + 
Sbjct: 502 ELAKALNINFERLDMSEYMERISSSQLIGAAAGYVGYEKGGILTEMIKKNPHT 554


>gi|149198905|ref|ZP_01875947.1| putative ATPase with chaperone activity [Lentisphaera araneosa
           HTCC2155]
 gi|149138103|gb|EDM26514.1| putative ATPase with chaperone activity [Lentisphaera araneosa
           HTCC2155]
          Length = 860

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A +AVA A+       +  A ++D   P  + + +GPTGVGKT +
Sbjct: 564 KLDETLHEKVIGQDEAVQAVADAV------IRARAGIKDPRRPIGSFIFLGPTGVGKTEL 617

Query: 70  SRRLARLA--GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA         I+++++++ E   V R V
Sbjct: 618 AKTLAYSLFDSEDLIRIDMSEYMEKHSVSRLV 649


>gi|119961353|ref|YP_945989.1| ATP-dependent Clp protease, ATP-binding subunit [Arthrobacter
           aurescens TC1]
 gi|119948212|gb|ABM07123.1| putative ATP-dependent Clp protease, ATP-binding subunit
           [Arthrobacter aurescens TC1]
          Length = 830

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 508 KMEDELHKRVVGQNEAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I +++++++E   V R
Sbjct: 562 AKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|323141519|ref|ZP_08076405.1| negative regulator of genetic competence ClpC/MecB
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413978|gb|EFY04811.1| negative regulator of genetic competence ClpC/MecB
           [Phascolarctobacterium sp. YIT 12067]
          Length = 906

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ +A  +V+ A+     R+             + L +GPTGVGKT ++
Sbjct: 571 QLEQRLHKRVIGQDEAVSSVSRAV-----RRARAGFKDKNRPVGSFLFLGPTGVGKTELA 625

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           + LA+         ++ +++++ E            GYVG +    + D V      
Sbjct: 626 KALAQELFGDERAMLRFDMSEYMEKHTTARLIGAPPGYVGYDEGGQLTDAVRRKPYC 682


>gi|315452923|ref|YP_004073193.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter felis
           ATCC 49179]
 gi|315131975|emb|CBY82603.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter felis
           ATCC 49179]
          Length = 735

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L + ++ Q  A   +  A++           + ++    + L VGP+GVGKT +
Sbjct: 433 KNLEEQLKKEVVAQDGAIEHLVKAIKIH-----ASGLVGEQKPIASFLFVGPSGVGKTEL 487

Query: 70  SRRLARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++ LA+       + +++++ E            GYVG +   ++ + +    + 
Sbjct: 488 AKALAKHMHLHLERFDMSEYKEAHSISKLIGAPSGYVGFDQGGLLVNAIRKHPHC 542


>gi|312129428|ref|YP_003996768.1| ATP-dependent chaperone clpb [Leadbetterella byssophila DSM 17132]
 gi|311905974|gb|ADQ16415.1| ATP-dependent chaperone ClpB [Leadbetterella byssophila DSM 17132]
          Length = 863

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL++ + GQ++A + V+ A+R      +  A ++D   P  + L +G TGVGKT ++
Sbjct: 554 LEQELEKRVAGQKEAIQVVSDAVR------RSRAGMQDPKKPIGSFLFLGSTGVGKTELA 607

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 608 KTLANYLFNDDNAMVRIDMSEYQEKHTVSRLV 639


>gi|291334189|gb|ADD93856.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
 gi|291336826|gb|ADD96360.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C727]
          Length = 132

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   LR+  + Q L  ++     P+ +L+ G  G GKT ++R +A  A  PF  +  + F
Sbjct: 49  LVDFLRDPAKFQNLGGNI-----PRGVLMSGSPGTGKTLLARAIAGEAKVPFFTISGSDF 103

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVR 115
            E+ +VG    ++ RD+ + A N++ 
Sbjct: 104 VEM-FVGVGASRV-RDMFETAKNMLH 127


>gi|238021384|ref|ZP_04601810.1| hypothetical protein GCWU000324_01283 [Kingella oralis ATCC 51147]
 gi|237868364|gb|EEP69370.1| hypothetical protein GCWU000324_01283 [Kingella oralis ATCC 51147]
          Length = 677

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 19  YIIGQQDAKRAVAIAL-----RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            + G  +AK  V   +      +R++            +P+ ILL G  G GKT +++ +
Sbjct: 159 DVAGCDEAKEEVQEIVDYLKAPDRYQSLGG-------RVPRGILLAGSPGTGKTLLAKAI 211

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           A  AG PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 212 AGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIIFIDEIDAV 262


>gi|227509312|ref|ZP_03939361.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191242|gb|EEI71309.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 717

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 279


>gi|282933688|ref|ZP_06339046.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297205112|ref|ZP_06922508.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
 gi|281302178|gb|EFA94422.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|297149690|gb|EFH29987.1| cell division protein FtsH [Lactobacillus jensenii JV-V16]
          Length = 711

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 281


>gi|227512324|ref|ZP_03942373.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
 gi|227084499|gb|EEI19811.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577]
          Length = 717

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 279


>gi|225620270|ref|YP_002721527.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
 gi|225215089|gb|ACN83823.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
          Length = 698

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E V    + + G ++AK  +   ++   +       L  ++ PK +LLVGP G GKT +
Sbjct: 169 KEDVKVTFKDVEGCKEAKEELQEVVQ-FLKDASKFTKLGAKI-PKGVLLVGPPGTGKTLL 226

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++ +A  A  PF  +  ++F E+ +VG    ++ RDL + 
Sbjct: 227 AKAVAGEANVPFFSMSGSEFVEM-FVGVGASRV-RDLFEQ 264


>gi|225022530|ref|ZP_03711722.1| hypothetical protein CORMATOL_02570 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944769|gb|EEG25978.1| hypothetical protein CORMATOL_02570 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 848

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL + ++GQ DA +AVA A+R      +  A + D   P    L +GPTGVGKT ++
Sbjct: 563 MEAELGKRVVGQLDAVQAVADAVR------RARAGVADPNRPMGSFLFLGPTGVGKTELA 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 617 KSLAEFMFDDERAMVRIDMSEYAEKHAVARLV 648


>gi|123430779|ref|XP_001307955.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase
           [Trichomonas vaginalis G3]
 gi|121889610|gb|EAX95025.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase
           [Trichomonas vaginalis G3]
          Length = 533

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   LR+  +   + A +     PK +LLVGP G GKT +S+ +A  AG PF  +  + F
Sbjct: 60  IVDFLRDPKKFIDMGARI-----PKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDF 114

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 115 VEM-FVGVGASRV-RDLFESAKKN 136


>gi|148235265|ref|NP_001086763.1| fidgetin-like protein 1 [Xenopus laevis]
 gi|82235765|sp|Q6DDU8|FIGL1_XENLA RecName: Full=Fidgetin-like protein 1
 gi|50415868|gb|AAH77410.1| Fignl1-prov protein [Xenopus laevis]
          Length = 655

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK ILL GP G GKT I + +A  +
Sbjct: 382 DDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGP--PKGILLFGPPGTGKTLIGKCIACQS 439

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 440 GATFFSISASSLT-SKWVGEG-EKMVRALFTVARCHQ 474


>gi|19705274|ref|NP_602769.1| cell division protein ftsH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713237|gb|AAL94068.1| Cell division protein ftsH [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 714

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK   + V   L+   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 274 DVAGIDEAKQELKEVVDFLKEPEKFRKIGAKI-----PKGVLLLGEPGTGKTLLAKAVAG 328

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 329 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFNKARKNAPCIVFIDEIDAVGRK 380


>gi|89093544|ref|ZP_01166492.1| ClpB protein [Oceanospirillum sp. MED92]
 gi|89082234|gb|EAR61458.1| ClpB protein [Oceanospirillum sp. MED92]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + S L   ++GQ++A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 565 MESTLHNRVVGQEEAVTAVSNAVR------RSRAGLADPNRPNGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 619 KALASFLFDTEEAMVRIDMSEFMEKHSVAR 648


>gi|332880092|ref|ZP_08447776.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682088|gb|EGJ55001.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ SEL + ++GQ++A  AV+ A+R      +  A L+D   P  + L +G TGVGKT +
Sbjct: 559 KLESELHKRVVGQEEAIEAVSDAIR------RSRAGLQDPRRPIGSFLFLGTTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA           +++++++ E   V R V
Sbjct: 613 AKALAEYLFDDENAMTRIDMSEYQEKHAVSRLV 645


>gi|332300277|ref|YP_004442198.1| ATPase AAA-2 domain protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177340|gb|AEE13030.1| ATPase AAA-2 domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 1009

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 21/104 (20%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           R++   L   +IGQ DA   V  A+ RNR           D+    + L +GPTGVGKT 
Sbjct: 671 RQMRQTLKDIVIGQDDAIDKVVKAIQRNR------LGLGSDKQPIGSFLFLGPTGVGKTY 724

Query: 69  ISRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           ++++LA L        I+++++++ E            GYVG +
Sbjct: 725 LAKKLAELLFDDEDALIRIDMSEYMESFNVSRLVGAAPGYVGYD 768


>gi|315179861|gb|ADT86775.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio furnissii
           NCTC 11218]
          Length = 755

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD+     + GQ +A   ++ +++             D     + L  GPTG
Sbjct: 446 SDKDILKNLDQKMKMLVFGQDNAIDVLSESIK-----LTRAGLGSDNRPVGSFLFAGPTG 500

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 501 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 560

Query: 113 I 113
            
Sbjct: 561 S 561


>gi|296224141|ref|XP_002757919.1| PREDICTED: spastin isoform 1 [Callithrix jacchus]
          Length = 616

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 342 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 399

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 400 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 430


>gi|255325836|ref|ZP_05366928.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297048|gb|EET76373.1| membrane protease FtsH catalytic subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 785

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFKQA 255


>gi|224089350|ref|XP_002308700.1| predicted protein [Populus trichocarpa]
 gi|222854676|gb|EEE92223.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ  A R+VA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 557 LEEVLHRRVVGQDIAVRSVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELA 610

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 611 KALASFLFNTENALVRIDMSEYMEKHAVSRLV 642


>gi|194433141|ref|ZP_03065423.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae 1012]
 gi|194418638|gb|EDX34725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae 1012]
 gi|332091156|gb|EGI96246.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           dysenteriae 155-74]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYVERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 558


>gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 71/184 (38%), Gaps = 27/184 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G  + K  +      L+N  +     A L     PK ILLVGP G GKT ++R LA
Sbjct: 217 NDVLGIDEFKEELEEIVEFLKNPKKYTDSGAKL-----PKGILLVGPPGTGKTLLARALA 271

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--REQASIN 129
             AG  F     ++F E+ +VG     V +I +     A +I+     D +  R +A   
Sbjct: 272 GEAGCAFFYKSGSEFDEM-FVGVGASRVREIFKAARAKAPSIIFIDEIDSIGGRRRAQDP 330

Query: 130 AEER-----ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              R     IL  + G   T         N  +V    L+     DK I + + D     
Sbjct: 331 GYSRDTINQILTEMDGFKQTESVIVIGATNFEQVLDPALKRPGRFDKMIHVPLPDVKGRE 390

Query: 177 SNFD 180
             F 
Sbjct: 391 QIFS 394


>gi|114567873|ref|YP_755027.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338808|gb|ABI69656.1| ATPases with chaperone activity, ATP-binding subunit
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 828

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L + +IGQ++A +AV+ A+     R+        +    + + +GPTGVGKT ++
Sbjct: 519 QMEDVLHQRVIGQEEAVKAVSRAV-----RRARAGLKNPKRPIGSFVFLGPTGVGKTELA 573

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 574 RSLAEAMFGSEDAIIRLDMSEYMEKHAVSR 603


>gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A]
 gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A]
          Length = 372

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 11  EIVSE-LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           EI S+ +   +IGQ+ AK+   +       R     +   +  P+NIL  GP+G GKT +
Sbjct: 115 EIKSDVIFEDVIGQELAKQKCRLI-----ERFLEEPERFGKWAPRNILFFGPSGTGKTML 169

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ LA     P I V+ T+     YVG    QI   L D A
Sbjct: 170 AKALANKTDVPIIPVKATQLIGE-YVGDGARQI-HQLYDRA 208


>gi|73663540|ref|YP_302321.1| stress response-related Clp ATPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|122063325|sp|Q49V34|CLPC_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|72496055|dbj|BAE19376.1| putative stress response-related Clp ATPase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 820

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHNRVIGQKDAVTSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L+K + + I+T   + L  +    +  + I +  TE + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNR----LSEQDINISVTEAAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVKIDHD 797


>gi|317059231|ref|ZP_07923716.1| cell division protein ftsH [Fusobacterium sp. 3_1_5R]
 gi|313684907|gb|EFS21742.1| cell division protein ftsH [Fusobacterium sp. 3_1_5R]
          Length = 720

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 12  IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I       + G  +AK     V   LR   + +++ A +     PK +LL+G  G GKT 
Sbjct: 267 ITQISFADVAGIDEAKQELEEVVEFLREPEKFKKIGARI-----PKGVLLLGSPGTGKTL 321

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 322 LAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFAKARKNAPCIVFIDEIDAVGRK 380


>gi|312372832|gb|EFR20707.1| hypothetical protein AND_19631 [Anopheles darlingi]
          Length = 478

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 22/169 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK  +L GP G GKT +++  A  A  PFI V  ++F E+ +VG     V  +      
Sbjct: 20  IPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM-FVGVGPSRVRDMFAMARK 78

Query: 109 VAINIVRESRRDEVREQA----------SINAEERILDALVGKT--------ATSNTREV 150
            A  I+     D V  +             N   ++L  + G          A +N  ++
Sbjct: 79  SAPCILFIDEIDAVGRKRGGKSFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDI 138

Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199
             K L      D++I +   D     S F +  G     L+ ++L  K+
Sbjct: 139 LDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGPLRTNLDKTDLARKM 187


>gi|254694352|ref|ZP_05156180.1| FtsH, cell division protein FtsH [Brucella abortus bv. 3 str.
           Tulya]
          Length = 468

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 13  IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKK 71

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 72  NAPCIIFIDEIDAV 85


>gi|240172144|ref|ZP_04750803.1| putative endopeptidase ATP binding protein chain b [Mycobacterium
           kansasii ATCC 12478]
          Length = 848

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 564 MEDELGKRVVGQKKAVQAVSDAVR------RSRAGVSDPNRPTGAFMFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + ES R  
Sbjct: 618 KALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTESVRRR 671


>gi|257057942|ref|YP_003135830.1| ATPase AAA [Cyanothece sp. PCC 8802]
 gi|256588108|gb|ACU98994.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8802]
          Length = 789

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + ++L   IIGQ++A +AV+ A+     R+             + +  GPTGVGKT +++
Sbjct: 471 LEAQLHESIIGQEEAVKAVSRAV-----RRARVGLKNPHRPVASFIFAGPTGVGKTELTK 525

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LAR         I++++++F E   V + +  
Sbjct: 526 ALARYLFGSEEAMIRLDMSEFMEPHTVSKLIGS 558


>gi|195108363|ref|XP_001998762.1| GI24145 [Drosophila mojavensis]
 gi|229559927|sp|B4K799|SPAST_DROMO RecName: Full=Spastin
 gi|193915356|gb|EDW14223.1| GI24145 [Drosophila mojavensis]
          Length = 765

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 491 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 548

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 549 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHLQ 582


>gi|124512450|ref|XP_001349358.1| ClpB protein, putative [Plasmodium falciparum 3D7]
 gi|23499127|emb|CAD51207.1| ClpB protein, putative [Plasmodium falciparum 3D7]
          Length = 1070

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 32/252 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + IIGQ DA + V  A+  +  R  +    R      +++ +GPTGVGKT +S+
Sbjct: 773 LENELHKQIIGQDDAVKVVTKAV--QRSRVGMNNPKR---PIASLMFLGPTGVGKTELSK 827

Query: 72  RLARLA-GAPFIKV--EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
            LA +    P   +  +++++ E           I  L+  A   V   +          
Sbjct: 828 VLADVLFDTPEAVIHFDMSEYMEKH--------SISKLIGAAPGYVGYEQGGL------- 872

Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI--DIEVADTSSDISNFDIPGGAS 186
                + DA+  K  +    +   K   D       +  + +++DT  +++NF       
Sbjct: 873 -----LTDAVRKKPYSIILFDEIEKAHPDVYNLLLRVIDEGKLSDTKGNVANFRNTIIIF 927

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
              L    +        +K+KI+  V K   E  R E    ID D V  DS+   E   I
Sbjct: 928 TSNLGSQSILDLANDPNKKEKIKEQVMKSVRETFRPEFYNRID-DHVIFDSLSKKELKEI 986

Query: 247 VFLDEFDKIVAR 258
             + E  K+  R
Sbjct: 987 ANI-EIRKVANR 997


>gi|329940378|ref|ZP_08289659.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
           griseoaurantiacus M045]
 gi|329300439|gb|EGG44336.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
           griseoaurantiacus M045]
          Length = 843

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A RAV+ A+       +  A L     P  + L +GPTGVGKT ++
Sbjct: 537 LEKHLHERVVGQDEAVRAVSEAV------LRSRAGLASPDRPIGSFLFLGPTGVGKTELA 590

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          ++++++++ E   V R V
Sbjct: 591 RALAEALFGSEERMVRLDMSEYQERHTVSRLV 622



 Score = 41.1 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +A     I +F   G   VG   L+   ++ +    ++ +R+ + +      R    RL+
Sbjct: 566 LASPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSE---YQERHTVSRLV 622

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     +      +     Y ++ LDE +K         +   D G         V
Sbjct: 623 GAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTV 682

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASG--AFHVSRPADLL--------PEIQGRFP 321
                 +V  S++ ++  +     + F A G  A   +R   +L        PE   R  
Sbjct: 683 DFTHTVIVMTSNLGSEAITRRGAGLGFTAGGTEAAEEARREQVLRPLREHFRPEFLNRID 742

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
             V  + L +   R I       L+ Q +  ++ + I +DF++ +++ LA          
Sbjct: 743 EIVVFRQLTEEQLRRIT----DLLLDQTRRRLRAQDIDVDFSDAAVELLARRGFQ----- 793

Query: 382 GDIGARRLQTVMER 395
            + GAR L+  ++R
Sbjct: 794 PEYGARPLRRTIQR 807


>gi|322390400|ref|ZP_08063922.1| exopolyphosphatase [Streptococcus parasanguinis ATCC 903]
 gi|321142911|gb|EFX38367.1| exopolyphosphatase [Streptococcus parasanguinis ATCC 903]
          Length = 809

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+       ++    + + +GPTGVGKT +++
Sbjct: 505 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSNKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 560 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 37.2 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +G+ L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSSEDMQQVVK----VMVKPLIATLAEQGMTLKFQPSALKLLATK 757

Query: 374 AVNLNSTVGDIGARRLQTVM----ERVLEDISFSASDLQEKTVVI 414
             +      ++GAR L+ V+    E  L ++       + +T+ +
Sbjct: 758 GYD-----PEMGARPLRRVLQTEVEDQLAELLLKGQAQEGQTIKV 797


>gi|297803738|ref|XP_002869753.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315589|gb|EFH46012.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 933

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 29/200 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +A   +   +    +  + P   D      P  +LL GP G GKT +++ +A  
Sbjct: 418 DVAGIDEAVDELQELV----KYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 473

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG PF ++  ++F E+  VG    +I RDL           +R +V + + I  +E  +D
Sbjct: 474 AGVPFYQMAGSEFVEV-LVGVGSARI-RDLF----------KRAKVNKPSVIFIDE--ID 519

Query: 137 ALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL  +       N+ +++    ++ E +  ++ IE+    +      +      G  N  
Sbjct: 520 ALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFL------GATNRR 573

Query: 194 ELFSKVMGSGRKKKIRMSVQ 213
           +L    +    +   ++ V+
Sbjct: 574 DLLDPALLRPGRFDRKIRVR 593


>gi|294507325|ref|YP_003571383.1| ATP-dependent Clp protease, ATPase subunit [Salinibacter ruber M8]
 gi|294343653|emb|CBH24431.1| ATP-dependent Clp protease, ATPase subunit [Salinibacter ruber M8]
          Length = 875

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L  +++GQ +A   ++ A+     R+        E    + + +GPTGVGKT ++
Sbjct: 519 KMEESLKEHVVGQDEAIEKLSKAI-----RRTRAGLKDPEKPIGSFIFLGPTGVGKTELA 573

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + L           I+++++++ E            GYVG  
Sbjct: 574 KVLTEYLFDSQESLIRIDMSEYMEKFSVSRLVGAPPGYVGHE 615


>gi|259650122|dbj|BAI42284.1| Clp protease ATP-binding subunit [Lactobacillus rhamnosus GG]
          Length = 697

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + S+L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 388 KNLASDLEQHVIGQNEAVDKVARAIR--RNRIGFNKTGR---PIGSFLFVGPTGVGKTEL 442

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 443 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 502

Query: 115 RESRRDE 121
                ++
Sbjct: 503 LLDEIEK 509



 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 114/338 (33%), Gaps = 58/338 (17%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVRE----------QASINAEERIL--DALVGKTAT 144
            ++ +   +L D  I  V E   +++ E          +A   A+ + L  D        
Sbjct: 342 EDMAKKQSNLPDDEIPTVTEKDMEKIVEEKTNIPVGELKAQEQAQLKNLASDLEQHVIGQ 401

Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204
           +   +   + +R          I    T   I +F   G   VG   L++  +K +    
Sbjct: 402 NEAVDKVARAIRRNR-------IGFNKTGRPIGSFLFVGPTGVGKTELAKQLAKELFGSE 454

Query: 205 KKKIRMSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK-- 254
              IR  + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K  
Sbjct: 455 DAMIRFDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAH 511

Query: 255 -------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS 307
                  +   D G         V      ++  S+  +     N      ++     V 
Sbjct: 512 PDVMNMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGATLSGKTHSVL 571

Query: 308 RPAD--LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILD 361
                   PE   RF   V  K L+K D   I++    DT +NL  Q        G+ + 
Sbjct: 572 DQLGNYFKPEFLNRFDDIVEFKPLSKDDLLKIVSLMINDTNNNLKSQ--------GLTIH 623

Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            T+   + L  +          +GAR L+ V++  +ED
Sbjct: 624 VTDPVKEKLVTLGY-----NPSMGARPLRRVIQEQIED 656


>gi|256848388|ref|ZP_05553831.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714986|gb|EEU29964.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis
           101-4-CHN]
          Length = 708

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A 
Sbjct: 224 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQAK 281

Query: 112 NI 113
             
Sbjct: 282 KN 283


>gi|261203737|ref|XP_002629082.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
 gi|239586867|gb|EEQ69510.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
          Length = 812

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 551 DDVAGLEIAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 608

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 609 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 642


>gi|269124507|ref|YP_003297877.1| ATP-dependent chaperone ClpB [Thermomonospora curvata DSM 43183]
 gi|268309465|gb|ACY95839.1| ATP-dependent chaperone ClpB [Thermomonospora curvata DSM 43183]
          Length = 863

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ R ++GQ  A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 562 MEEEIGRRLVGQTQAVKAVSDAV-----RRARAGVSDPDRPTGSFLFLGPTGVGKTELAK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 617 ALAEFLFDDERAMVRIDMSEYSEKHSVARLV 647


>gi|169335290|ref|ZP_02862483.1| hypothetical protein ANASTE_01702 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258028|gb|EDS71994.1| hypothetical protein ANASTE_01702 [Anaerofustis stercorihominis DSM
           17244]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A R V+ A+       +  A ++D   P  + L +GPTGVGKT ++
Sbjct: 565 LEDTLHERVIGQDEAVRLVSDAI------IRSRAGIQDPSKPIGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          I+++++++ E            GYVG +
Sbjct: 619 KTLAYTLFDNEQNIIRIDMSEYMEKFSVSRLIGAPPGYVGYD 660


>gi|146282702|ref|YP_001172855.1| chaperone-associated ATPase, putative [Pseudomonas stutzeri A1501]
 gi|145570907|gb|ABP80013.1| chaperone-associated ATPase, putative [Pseudomonas stutzeri A1501]
          Length = 964

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 624 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 678

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA       +  ++++++++ E   V R V
Sbjct: 679 ALAESVYGNESALLRIDMSEYGERHTVARLV 709


>gi|221067304|ref|ZP_03543409.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Comamonas
           testosteroni KF-1]
 gi|220712327|gb|EED67695.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Comamonas
           testosteroni KF-1]
          Length = 774

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A   ++ A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 LERDLKSVVFGQDKALEVLSSAVK-----MARSGLGKPDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 513 QLAYILGVDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHS 565


>gi|296875643|ref|ZP_06899712.1| ATP-dependent Clp protease [Streptococcus parasanguinis ATCC 15912]
 gi|296433327|gb|EFH19105.1| ATP-dependent Clp protease [Streptococcus parasanguinis ATCC 15912]
          Length = 809

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+       ++    + + +GPTGVGKT +++
Sbjct: 505 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSNKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 560 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|281492090|ref|YP_003354070.1| ATP-dependent Clp protease chaperonin ATPase ClpB [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375773|gb|ADA65270.1| ATP-dependent Clp protease, chaperonin ATPase ClpB [Lactococcus
           lactis subsp. lactis KF147]
          Length = 867

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 21/100 (21%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + ++GQ +A  AV+ A+       +  A ++D   P  + L +GPTGVGKT +++ 
Sbjct: 567 ETLHQRVVGQDEAVEAVSDAI------IRARAGIQDPNRPLGSFLFLGPTGVGKTELAKA 620

Query: 73  LARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           LA          ++++++++ E            GYVG +
Sbjct: 621 LAENLFDSEEHMVRIDMSEYMEKHSVPRLVGAPPGYVGYD 660


>gi|288574818|ref|ZP_06393175.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570559|gb|EFC92116.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 640

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL+GP G GKT ++R  A  A  PF     + F E+ +VG    ++ RDL + A
Sbjct: 188 VPKGVLLLGPPGTGKTLLARACAGEAAVPFFSTSGSDFVEM-FVGVGASRV-RDLFEQA 244


>gi|227522410|ref|ZP_03952459.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
 gi|227090468|gb|EEI25780.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290]
          Length = 717

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 279


>gi|254393823|ref|ZP_05008935.1| cell division protein [Streptomyces clavuligerus ATCC 27064]
 gi|197707422|gb|EDY53234.1| cell division protein [Streptomyces clavuligerus ATCC 27064]
          Length = 685

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 30  VAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           V   L+N   +RR           MP  +LL GP G GKT ++R +A  AG PF     +
Sbjct: 256 VVDFLKNPRPYRRMGA-------RMPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASAS 308

Query: 88  KFTEIGYVGRNVEQIIRDLVDVA 110
           +F E+  VG    ++ R+L   A
Sbjct: 309 EFIEM-IVGVGAGRV-RELFAEA 329


>gi|194098306|ref|YP_002001364.1| putative ClpB protein [Neisseria gonorrhoeae NCCP11945]
 gi|239998724|ref|ZP_04718648.1| putative ClpB protein [Neisseria gonorrhoeae 35/02]
 gi|268594573|ref|ZP_06128740.1| chaperone clpB [Neisseria gonorrhoeae 35/02]
 gi|193933596|gb|ACF29420.1| putative ClpB protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547962|gb|EEZ43380.1| chaperone clpB [Neisseria gonorrhoeae 35/02]
 gi|317164015|gb|ADV07556.1| putative ClpB protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
 gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC
           25986]
          Length = 712

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLAR 75
             + G  +A   +   +R+       P   R     +P+ +LLVGP G GKT +++ +A 
Sbjct: 192 EDVAGVDEAVEELEE-IRDF---LSDPDRYRKLGAKIPRGVLLVGPPGTGKTLLAKAVAG 247

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 248 EAGVPFFSISGSDFVEM-FVGVGASRV-RDLFKEA 280


>gi|78184725|ref|YP_377160.1| peptidase M41, FtsH [Synechococcus sp. CC9902]
 gi|78169019|gb|ABB26116.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Synechococcus sp. CC9902]
          Length = 599

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ +LLVGP G GKT +++ +A  AG PF  +  ++F E+ +VG     V  + R   +
Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIACEAGVPFFSMAASEFVEM-FVGVGASRVRDLFRQAKE 243

Query: 109 VAINIVRESRRDEV 122
            A  IV     D V
Sbjct: 244 KAPCIVFIDEIDAV 257


>gi|16331048|ref|NP_441776.1| ClpB protein [Synechocystis sp. PCC 6803]
 gi|2493734|sp|P74361|CLPB2_SYNY3 RecName: Full=Chaperone protein ClpB 2
 gi|1653543|dbj|BAA18456.1| ClpB protein [Synechocystis sp. PCC 6803]
          Length = 872

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LEDELHSRVIGQDEAVTAVAEAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+         ++++++++ E   V R
Sbjct: 622 KALAKNLFDTEEALVRIDMSEYMEKHAVSR 651


>gi|77408447|ref|ZP_00785186.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae COH1]
 gi|77172970|gb|EAO76100.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae COH1]
          Length = 815

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEKELHKRVIGQDDAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYD 604


>gi|119382819|ref|YP_913875.1| ATPase [Paracoccus denitrificans PD1222]
 gi|119372586|gb|ABL68179.1| ATPase AAA-2 domain protein [Paracoccus denitrificans PD1222]
          Length = 875

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  A++ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 559 KMEDVLSKRVIGQSEAVTAISNAVR------RARAGLNDPKRPLGSFLFLGPTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ +A       +  +++++++F E   V R
Sbjct: 613 TKAIAEYLFDDDSAMVRIDMSEFMEKHSVAR 643


>gi|116668736|ref|YP_829669.1| ATPase [Arthrobacter sp. FB24]
 gi|116608845|gb|ABK01569.1| ATPase AAA-2 domain protein [Arthrobacter sp. FB24]
          Length = 830

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A +A++ A+R      +  A L+D   P    +  GPTGVGKT +
Sbjct: 508 KMEDELHKRVVGQNEAIKALSQAIR------RTRAGLKDPKRPGGSFIFAGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          I +++++++E   V R
Sbjct: 562 AKALAEFLFGEEDALITLDMSEYSEKHTVSR 592


>gi|323342363|ref|ZP_08082595.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463475|gb|EFY08669.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 631

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           + R     +     +PK +LLVGP G GKT +++  A  A  PF  +  + F E+ +VG 
Sbjct: 180 YLRHPKRFEAMGARIPKGMLLVGPPGTGKTLLAKAAAGEADVPFYAISGSDFVEM-FVGV 238

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEV 122
               V  + +     A  I+     D V
Sbjct: 239 GASRVRDMFKKAKATAPCIIFIDEIDAV 266


>gi|319425424|gb|ADV53498.1| ATP-dependent chaperone ClpB [Shewanella putrefaciens 200]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|319399727|gb|EFV87976.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
           epidermidis FRI909]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHKRVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHR----LSEQNINIVVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHD 797


>gi|312135577|ref|YP_004002915.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775628|gb|ADQ05115.1| ATPase AAA-2 domain protein [Caldicellulosiruptor owensensis OL]
          Length = 829

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A +AVA A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHRRVVGQDEAVKAVARAIR------RGRVGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 562 ARALAEALFGTEDALIRIDMSEYMEKFNVSKLIGSPPGYVG 602


>gi|307327379|ref|ZP_07606566.1| ATP-dependent chaperone ClpB [Streptomyces violaceusniger Tu 4113]
 gi|306887058|gb|EFN18057.1| ATP-dependent chaperone ClpB [Streptomyces violaceusniger Tu 4113]
          Length = 863

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MEDELGKRLIGQLEAVRAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 623 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 653


>gi|269836528|ref|YP_003318756.1| ATPase AAA-2 domain-containing protein [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785791|gb|ACZ37934.1| ATPase AAA-2 domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   I+GQ++A   +A A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MEEALHERIVGQEEAISTMAKAVR------RARAGLKDPRRPIGSFIFLGPTGVGKTLLA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR---- 123
           R LA          IK+++++F E   V R V      +       + E+ R +      
Sbjct: 555 RALAEFMFGSEDALIKIDMSEFMERHNVSRLVGAPPGYIGYEEGGQLTEAVRRKSYSVIL 614

Query: 124 ----EQASINAEERILDALV--GKTATSNTREVFRKKL 155
               E+A   A   +L  L     T     R  FR  +
Sbjct: 615 LDEIEKAHPEAFNMLLQILEDGNLTDAKGRRVDFRNTI 652


>gi|224438185|ref|ZP_03659120.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313144630|ref|ZP_07806823.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
 gi|313129661|gb|EFR47278.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG
           18818]
          Length = 631

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  V   + +  +  +  A +  ++ P+ +LLVGP G GKT +++ +A  A
Sbjct: 171 DDMAGNAEAKEEVVEIV-DFLKYPERYAAVGAKI-PRGVLLVGPPGTGKTLLAKAVAGEA 228

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL ++A          DE+       A      
Sbjct: 229 NVPFFSMSGSSFIEM-FVGLGASRV-RDLFEMAKKDAPSIIFIDEIDAIGKSRA------ 280

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A           +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 281 AGSMVGGNDEREQTLNQLLAEMDGFGSESAPVIVLAATNRPEILDPALLRPGRFDRQVLV 340

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K    GR + +++ ++
Sbjct: 341 DKPDFEGRLEILKVHIK 357


>gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
 gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
          Length = 660

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 21/207 (10%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L++  R  +L A +     PK +LLVGP G GKT +++ +A  A  PF  V  + F
Sbjct: 199 IVDFLKHPQRYIRLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSF 253

Query: 90  TEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILDALVGKTATSNTR 148
            E+ +VG    ++ RDL + A          DE+       A      A           
Sbjct: 254 IEM-FVGVGAARV-RDLFEQAKKEAPSIIFIDEIDAIGKSRA------AAGPIGGNDERE 305

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           +   + L + +  D      +   +++      P     G  + + +  K    GR   +
Sbjct: 306 QTLNQLLAEMDGFDSSESPVIVLAATNRPEVLDPALLRPGRFDRTVVVDKPDFEGRLAIL 365

Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHR 235
           ++ V+         +    +D++ + R
Sbjct: 366 KVHVK-------HIKLSPNVDLEEIAR 385


>gi|83816370|ref|YP_445441.1| ATP-dependent Clp protease, ATPase subunit [Salinibacter ruber DSM
           13855]
 gi|83757764|gb|ABC45877.1| ATP-dependent Clp protease, ATPase subunit [Salinibacter ruber DSM
           13855]
          Length = 875

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L  +++GQ +A   ++ A+     R+        E    + + +GPTGVGKT ++
Sbjct: 519 KMEESLKEHVVGQDEAIEKLSKAI-----RRTRAGLKDPEKPIGSFIFLGPTGVGKTELA 573

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + L           I+++++++ E            GYVG  
Sbjct: 574 KVLTEYLFDSQESLIRIDMSEYMEKFSVSRLVGAPPGYVGHE 615


>gi|27467205|ref|NP_763842.1| endopeptidase [Staphylococcus epidermidis ATCC 12228]
 gi|57866102|ref|YP_187761.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus epidermidis RP62A]
 gi|242241856|ref|ZP_04796301.1| ClpB ATPase [Staphylococcus epidermidis W23144]
 gi|293367900|ref|ZP_06614538.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81675398|sp|Q5HRM8|CLPC_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|81843102|sp|Q8CQ88|CLPC_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
 gi|27314747|gb|AAO03884.1|AE016744_287 endopeptidase [Staphylococcus epidermidis ATCC 12228]
 gi|57636760|gb|AAW53548.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Staphylococcus epidermidis RP62A]
 gi|242234634|gb|EES36946.1| ClpB ATPase [Staphylococcus epidermidis W23144]
 gi|291317929|gb|EFE58337.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329738043|gb|EGG74264.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU045]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHKRVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHR----LSEQNINIVVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHD 797


>gi|326915457|ref|XP_003204034.1| PREDICTED: spastin-like [Meleagris gallopavo]
          Length = 598

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 324 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 381

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 382 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 412


>gi|319760324|ref|YP_004124262.1| chaperone protein ClpB [Candidatus Blochmannia vafer str. BVAF]
 gi|318039038|gb|ADV33588.1| chaperone protein ClpB [Candidatus Blochmannia vafer str. BVAF]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ DA ++V+ A+R      +  + L D   P  + + +GPTGVGKT + 
Sbjct: 563 MEKILHQLVIGQDDAVQSVSNAIR------RSRSGLSDPKRPIGSFMFLGPTGVGKTELC 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + L+       +  +++++++F E   V +
Sbjct: 617 KSLSYFLFDTDSAMVRIDMSEFMEKHSVSK 646


>gi|296119034|ref|ZP_06837607.1| ATP-dependent chaperone protein ClpB [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968132|gb|EFG81384.1| ATP-dependent chaperone protein ClpB [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 851

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L R ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MEDVLGRRVVGQSEAVSAVSDAV-----RRSRAGIADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR----- 123
            L+       +  ++++++++ E   V R +      +   A   + E+ R         
Sbjct: 620 ALSEFLFDDESAMVRIDMSEYGEKHSVARLIGAPPGYVGHEAGGQLTEAVRRRPYTLVLF 679

Query: 124 ---EQASINAEERILDAL 138
              E+A  +  + +L  L
Sbjct: 680 DEVEKAHSDVFDILLQVL 697


>gi|284007606|emb|CBA73208.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 763

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L   + GQ+ A   ++ A++                     L  GPTGVGKT +
Sbjct: 454 KNLDNRLKLLVFGQEQAIETLSEAIK-----MNRAGLGSSHRPIGAFLFAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V      
Sbjct: 509 TVQLAKALDIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPYS 563


>gi|268607891|ref|ZP_06141622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruminococcus
           flavefaciens FD-1]
          Length = 742

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 16/96 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   + + I GQ +A   V  A++           L +     ++L VGPTGVGKT I++
Sbjct: 443 LEDRMKKRIFGQDEAIAQVVNAVK-----FSKAGLLEENKPLASLLFVGPTGVGKTEIAK 497

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVG 96
            LA   G   I+ +++++ E            GYVG
Sbjct: 498 SLAEELGVKLIRFDMSEYGEKHAVAKLIGSPAGYVG 533


>gi|222034296|emb|CAP77037.1| chaperone clpB [Escherichia coli LF82]
          Length = 823

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 528 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 581

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I++++++F E   V R V
Sbjct: 582 KALANFMFDSDEAMIRIDMSEFMEKHSVSRLV 613


>gi|108797458|ref|YP_637655.1| ATPase AAA-2 [Mycobacterium sp. MCS]
 gi|119866543|ref|YP_936495.1| ATPase [Mycobacterium sp. KMS]
 gi|126433079|ref|YP_001068770.1| ATPase [Mycobacterium sp. JLS]
 gi|108767877|gb|ABG06599.1| ATPase AAA-2 [Mycobacterium sp. MCS]
 gi|119692632|gb|ABL89705.1| ATPase AAA-2 domain protein [Mycobacterium sp. KMS]
 gi|126232879|gb|ABN96279.1| ATPase AAA-2 domain protein [Mycobacterium sp. JLS]
          Length = 848

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + ++GQ+ A +AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 564 MEDELGKRVVGQRRAVQAVSDAVR------RTRAGVADPNRPTGSFMFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 618 KALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|71894624|ref|YP_278732.1| cell division protein FtsH [Mycoplasma synoviae 53]
          Length = 669

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G ++    ++  +   +N  + QQ  A +     P  ILL GP G GKT +++  A 
Sbjct: 195 DIAGNKEPIEEISEVVDYLKNPGKYQQSGARM-----PHGILLGGPPGTGKTLLAKATAG 249

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124
            A  PF  V  + F E+ +VG   +++ + + +   N       DE+  
Sbjct: 250 EANVPFYFVSASSFVEL-FVGMGAKRVRQVISEARKNSPAIIFIDELDA 297


>gi|148543505|ref|YP_001270875.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri DSM
           20016]
 gi|194467680|ref|ZP_03073667.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227363654|ref|ZP_03847768.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|325681849|ref|ZP_08161368.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
 gi|148530539|gb|ABQ82538.1| membrane protease FtsH catalytic subunit [Lactobacillus reuteri DSM
           20016]
 gi|194454716|gb|EDX43613.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23]
 gi|227071323|gb|EEI09632.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3]
 gi|324978940|gb|EGC15888.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A]
          Length = 702

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  +G PF  +  + F
Sbjct: 210 IVEFLKNPKKFTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDF 264

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 265 VEM-FVGVGASRV-RDLFDQA 283


>gi|328886574|emb|CCA59813.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
           venezuelae ATCC 10712]
          Length = 853

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  E+   I+GQ +A  AV+ A+R      +  A + D   P  + L +GPTGVGKT +
Sbjct: 533 KLEEEMHARIVGQDEAVTAVSEAVR------RSRAGMGDPNRPVGSFLFLGPTGVGKTEL 586

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA L        I+ ++++F E   V R V
Sbjct: 587 AKTLAGLLFGDEDRMIRFDMSEFQEKHTVARLV 619


>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
 gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
          Length = 734

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+ +  A+    +  ++   + D   PK ILL GP G GKT +++ +A  +
Sbjct: 456 EDIGGLEHAKQELKEAVEWPLKYPEVFETV-DIKPPKGILLFGPPGTGKTLLAKAVANES 514

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEVREQ----ASINA 130
            A FI V+  +     +VG    +V ++ R    VA  ++     D +  +    A  + 
Sbjct: 515 NANFISVKGPELL-SKWVGESEKHVREMFRKARQVAPCVLFFDEIDSLAPRRGGGADSHV 573

Query: 131 EERILDAL 138
            ER++  L
Sbjct: 574 TERVVSQL 581



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 21/211 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV--GRNVEQIIRDLVDV 109
            PK +LL GP G GKT I++ +A    A FI +   +     Y    + + +I  +  + 
Sbjct: 214 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKEN 273

Query: 110 AINIVRESRRDEVREQASI---NAEERILDALVGKTATSNTR------------EVFRKK 154
           A +I+     D +  +        E R++  L+        R            +     
Sbjct: 274 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDALDPA 333

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIP--GGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           LR     D+EI+I V D        +I   G      +NL EL    +G        +  
Sbjct: 334 LRRPGRFDREIEIGVPDREGRKEILEIHTRGMPLAEDVNLDELADHTIGFVGADLEALCK 393

Query: 213 QKCYPELMR--DESDRLIDMDTVHRDSIQMV 241
           +     L +  ++ +  I+ + +  + ++ +
Sbjct: 394 EAAMHALRKRMEKGEIDIEAEEIPEEVLENL 424


>gi|300825131|ref|ZP_07105224.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 119-7]
 gi|300522403|gb|EFK43472.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 119-7]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|289449709|ref|YP_003475576.1| putative negative regulator of genetic competence ClpC/MecB
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184256|gb|ADC90681.1| putative negative regulator of genetic competence ClpC/MecB
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 945

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 20/101 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L + +IGQ +A   ++ A+R      +  A       P + + VGPTGVGKT + +
Sbjct: 648 LESRLHQRVIGQNEAIAVLSKAVR------RSRAGFGRRNKPASFIFVGPTGVGKTELVK 701

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            L  +        I++++++F E            GYVG +
Sbjct: 702 ALTEVLFDDEKAMIRMDMSEFMEAHTVSKIIGSPPGYVGYD 742



 Score = 38.4 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   SL  ++ R I+      ++ +    ++  G+ L+ T+ + D + + 
Sbjct: 838 PEFLNRVDEIVVFNSLTPAELRQII----DIMLREVAANLQRIGVKLEVTDAAKDYIVE- 892

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASD------LQEKTVVIDAEYVRLHIGDF 426
               +      GAR L+  + R+LED    A D           V IDA+  +L I   
Sbjct: 893 ----HGYSPKYGARPLRKAIRRLLEDPL--ADDYLRGTLRGIAKVAIDAQDNQLQIKKI 945


>gi|256852016|ref|ZP_05557403.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661415|ref|ZP_05862328.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
 gi|256615428|gb|EEU20618.1| cell division protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547870|gb|EEX23847.1| cell division protein [Lactobacillus jensenii 115-3-CHN]
          Length = 715

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 228 RIPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 285


>gi|253995931|ref|YP_003047995.1| ATP-dependent chaperone ClpB [Methylotenera mobilis JLW8]
 gi|253982610|gb|ACT47468.1| ATP-dependent chaperone ClpB [Methylotenera mobilis JLW8]
          Length = 863

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L   ++GQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEAKLHERVVGQDEAVRLVSDAIR------RSRSGLGDPNRPYGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 620 KSLANFLFDSEEHLIRIDMSEFMEKHSVAR 649


>gi|126663501|ref|ZP_01734498.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
 gi|126624449|gb|EAZ95140.1| putative transmembrane AAA-metalloprotease FtsH [Flavobacteria
           bacterium BAL38]
          Length = 639

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +      L+   +   +   +     PK  LLVGP G GKT +++ +A  
Sbjct: 191 VAGLEGAKEEIQEIVEFLKTPEKYTSIGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 245

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 246 AKVPFFSLSGSDFVEM-FVGVGASRV-RDLFKQA 277


>gi|295690764|ref|YP_003594457.1| ATP-dependent chaperone Clpb [Caulobacter segnis ATCC 21756]
 gi|295432667|gb|ADG11839.1| ATP-dependent chaperone ClpB [Caulobacter segnis ATCC 21756]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 29/247 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 559 KMEDQLRGRVVGQDEALEAVSDAVR------RARAGLQDPSKPIGSFLFLGPTGVGKTEL 612

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA       A   +++++++ E            GYVG +      E + R    V 
Sbjct: 613 TKSLAEFLFADEAAITRMDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVV 672

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    +V        ++ R+ D         NT  +    L    ++++E   +V
Sbjct: 673 LFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLANQEEGEDV 732

Query: 170 ADTSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
                 + N          +  + E+  F ++        +R+ +Q+    L        
Sbjct: 733 EAVRPMVMNTVRGHFRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMSLA 792

Query: 228 IDMDTVH 234
           +D + ++
Sbjct: 793 LDAEALN 799


>gi|255994135|ref|ZP_05427270.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989]
 gi|255993803|gb|EEU03892.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989]
          Length = 623

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ ++  +   +N  + ++L A      +PK +LLVGP G GKT IS+  A 
Sbjct: 162 DVAGLKEEKQELSEIVDFLKNPAKFKELGA-----RVPKGVLLVGPPGTGKTYISKAAAG 216

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 217 EADVPFYTISGSDFVEM-FVGVGASRV-RDLFAEAKKN 252


>gi|225442523|ref|XP_002278786.1| PREDICTED: similar to cell division protein FtsH-like [Vitis
           vinifera]
          Length = 888

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 18/133 (13%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR       R   +P  ILL GP GVGKT +++ +A  AG  F  +  ++F EI YVG 
Sbjct: 447 YRR-------RGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV 498

Query: 98  N---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154
               V  + ++  + A ++V     D V         ER L    G      T       
Sbjct: 499 GASRVRALYQEAKENAPSVVFIDELDAV-------GRERGLIKGSGGQERDATLNQLLVC 551

Query: 155 LRDGEISDKEIDI 167
           L   E     I I
Sbjct: 552 LDGFEGRGNVITI 564


>gi|156744265|ref|YP_001434394.1| ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156235593|gb|ABU60376.1| ATPase AAA-2 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 402

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I   L   I GQ+ A  A+ I + NR R      + R       +L +GPTGVGKT  +R
Sbjct: 22  IEQSLRNAIFGQERAIEAI-IRVLNRARFGFAAGNARRPRAT--LLFLGPTGVGKTETAR 78

Query: 72  RLARLA---GAPFIKVEVTKFTEIG-----------YVGRN 98
           RLA+L    G  F+K++ + F++             YVGR+
Sbjct: 79  RLAQLLRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRD 119



 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLIL-TDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
           PE   R    V  + L+    R +L    +     QY+      GI +  TE++ + +  
Sbjct: 227 PEWINRIDEIVAFRPLSSEVLRQVLDRMVKEA-NQQYQR----HGIHVTLTEEACEYVLR 281

Query: 373 VAVNLNSTVGDIGARRLQT----VMERVLEDISFSASDLQEKTVVIDAEYVRLH 422
                       GAR L+     ++E  L D+  S        V++ A  +  H
Sbjct: 282 KGFE-----PRFGARPLRQQLLKLIEAPLADLMASGGIPAGSRVLVVATGIDRH 330


>gi|15606509|ref|NP_213889.1| ATP-dependent Clp protease [Aquifex aeolicus VF5]
 gi|2983728|gb|AAC07290.1| ATP-dependent Clp protease [Aquifex aeolicus VF5]
          Length = 810

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + ++GQ +A +AVA A+R    R  L    R        + +GPTGVGKT  ++
Sbjct: 495 IEEELKKRVVGQDEAIKAVAKAIR--RSRVGLKGKHR---PIGVFMFLGPTGVGKTETAK 549

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          I+ +++++ E   V R
Sbjct: 550 ALAEYLFGTEDALIRFDMSEYMEKHTVSR 578


>gi|120599936|ref|YP_964510.1| ATPase [Shewanella sp. W3-18-1]
 gi|146292128|ref|YP_001182552.1| ATPase [Shewanella putrefaciens CN-32]
 gi|120560029|gb|ABM25956.1| ATPase AAA-2 domain protein [Shewanella sp. W3-18-1]
 gi|145563818|gb|ABP74753.1| ATPase AAA-2 domain protein [Shewanella putrefaciens CN-32]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|76788075|ref|YP_330445.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           agalactiae A909]
 gi|77405660|ref|ZP_00782748.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae H36B]
 gi|77411530|ref|ZP_00787873.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae CJB111]
 gi|76563132|gb|ABA45716.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           agalactiae A909]
 gi|77162384|gb|EAO73352.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae CJB111]
 gi|77175733|gb|EAO78514.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           agalactiae H36B]
          Length = 815

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEKELHKRVIGQDDAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYD 604


>gi|306430643|emb|CBJ17068.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA     PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGETSVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|240125502|ref|ZP_04738388.1| putative ClpB protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684092|ref|ZP_06150954.1| ClpB protein [Neisseria gonorrhoeae SK-92-679]
 gi|268624376|gb|EEZ56776.1| ClpB protein [Neisseria gonorrhoeae SK-92-679]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|240112653|ref|ZP_04727143.1| putative ClpB protein [Neisseria gonorrhoeae MS11]
 gi|268598720|ref|ZP_06132887.1| ClpB protein [Neisseria gonorrhoeae MS11]
 gi|268582851|gb|EEZ47527.1| ClpB protein [Neisseria gonorrhoeae MS11]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|222617029|gb|EEE53161.1| hypothetical protein OsJ_35988 [Oryza sativa Japonica Group]
          Length = 648

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 14/226 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK+ V   +     R  +    R     + +LL GP G GKT I + +A  A
Sbjct: 399 DDIAGLEHAKKCVTEMVIWPLLRPDIFHGCRSPG--RGLLLFGPPGTGKTMIGKAIAGEA 456

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            A F  +  +  T   ++G   E+++R L  VA    R+     V E       + +L  
Sbjct: 457 KATFFYISASSLT-SKWIGEG-EKLVRALFGVA--CCRQPAVIFVDE------IDSLLSQ 506

Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEID--IEVADTSSDISNFDIPGGASVGILNLSEL 195
                   ++R +  + L + E  D   D  + +   +  I N     G        + +
Sbjct: 507 RKSDGEHESSRRLKTQFLIEMEGFDSGNDQILLIEARAWIIRNLLEKDGLFKLTEEETNI 566

Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
             K+        ++  V+      +R+   + + +  ++++ ++ V
Sbjct: 567 VCKLTEGYSGSDMKNLVKDASMGPLREALQQGVGITKLNKEDMRPV 612


>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 622

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110
            P+ ILL GP G GKT +++ +A   G  FI+V  T+   +G +    E  IRDL   A 
Sbjct: 74  PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATEL--VGGMSGESESKIRDLFQSAS 131

Query: 111 ------INIVRESRRDEVREQASINAEERI-------LDALVGKTA------TSNTREVF 151
                 + I         R+ A    E RI       LD L            +N  +  
Sbjct: 132 QRAPALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSL 191

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183
              LR     D+EI + +   +      D   
Sbjct: 192 DPALRRAGRFDREIAMGIPSEAQRKQILDKMM 223



 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 93/263 (35%), Gaps = 37/263 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
            E+ +EL R ++G        A+   + ++             P  ILL GP G GKT  
Sbjct: 352 EEVHNELKRLVVG--------AVQYPSLYK-------KFGVDTPAGILLYGPPGCGKTYC 396

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASIN 129
           ++ LA    A FI V+  +     YVG   E+ +R L   A            R  A   
Sbjct: 397 AKALANECKANFIAVKGPQLLNK-YVGE-AERAVRQLFMRA------------RNSAPCV 442

Query: 130 AEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                LDAL  K    +S    +  + L + +  D   D+ V   ++     D P     
Sbjct: 443 IFFDELDALAPKRSEDSSGVSRIVNQLLTELDGMDVRKDVFVVAATNRPDCID-PAMLRP 501

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR----DESDRLIDMDTVH-RDSIQMVE 242
           G L+            R   ++   ++    L      ++  R + +D     D   +V+
Sbjct: 502 GRLDRLISVDLPNSDARVDILKTICKRQKVPLADSVNLEKIARSVQVDGFSGADLTALVK 561

Query: 243 NYGIVFLDEFDKIVARDSGNGIG 265
              +  LDE  K V  +S    G
Sbjct: 562 EASVRALDEIVKKVGYESAQKDG 584


>gi|87200837|ref|YP_498094.1| AAA ATPase, central region [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136518|gb|ABD27260.1| AAA ATPase, central region [Novosphingobium aromaticivorans DSM
           12444]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ+DA  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 563 MEEALGKRVIGQKDAVLAVSKAVR------RARAGLQDPNRPLGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KALAGFLFDDDNAMVRIDMSEFMEKHSVSR 646


>gi|59801418|ref|YP_208130.1| putative ClpB protein [Neisseria gonorrhoeae FA 1090]
 gi|240127954|ref|ZP_04740615.1| putative ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268686347|ref|ZP_06153209.1| ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293399276|ref|ZP_06643441.1| ATP-dependent chaperone ClpB [Neisseria gonorrhoeae F62]
 gi|59718313|gb|AAW89718.1| putative ClpB protein [Neisseria gonorrhoeae FA 1090]
 gi|268626631|gb|EEZ59031.1| ClpB protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291610690|gb|EFF39800.1| ATP-dependent chaperone ClpB [Neisseria gonorrhoeae F62]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|45657679|ref|YP_001765.1| ATP-dependent Clp protease ATP-binding subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600919|gb|AAS70402.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 740

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL   I GQ  A   +  ++     R              + L  GPTGVGKT +
Sbjct: 440 KNLDEELKAKIYGQDSAIDQLVQSI-----RLSRSGLSEPGKPVGSFLFAGPTGVGKTEL 494

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           +R+LA + G   I+ +++++ E   V R +  
Sbjct: 495 TRKLAEILGVELIRFDMSEYMEKHTVSRLIGS 526


>gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana]
 gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana]
 gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana]
 gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana]
 gi|332659430|gb|AEE84830.1| FtsH extracellular protease [Arabidopsis thaliana]
          Length = 946

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 29/200 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            + G  +A   +   +    +  + P   D      P  +LL GP G GKT +++ +A  
Sbjct: 431 DVAGIDEAVDELQELV----KYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 486

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG PF ++  ++F E+  VG    +I RDL           +R +V + + I  +E  +D
Sbjct: 487 AGVPFYQMAGSEFVEV-LVGVGSARI-RDLF----------KRAKVNKPSVIFIDE--ID 532

Query: 137 ALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL  +       N+ +++    ++ E +  ++ IE+    +      +      G  N  
Sbjct: 533 ALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFL------GATNRR 586

Query: 194 ELFSKVMGSGRKKKIRMSVQ 213
           +L    +    +   ++ V+
Sbjct: 587 DLLDPALLRPGRFDRKIRVR 606


>gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis]
 gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 835

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 95/256 (37%), Gaps = 24/256 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G  DA + +   +    +  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 209 EDIGGLSDAIQKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 267

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQASI---NAE 131
            A FI +   +     Y G + E+   I ++  + A +I+     D +  +        E
Sbjct: 268 NAHFIAINGPEIMSKFY-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 326

Query: 132 ERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++  L+               A +N  +     LR     D+EI++ V D        
Sbjct: 327 KRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEIL 386

Query: 180 DIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I   G  +      E   +V+   R+K      ++    +   E+ +  +   V     
Sbjct: 387 QIHTRGMPLEPDYDKEAVLRVLREIREKG-NFDAERVDKIIAEVENAK--NESEVKEALK 443

Query: 239 QMVENYGIVFLDEFDK 254
           +  E Y  V     DK
Sbjct: 444 KDAEIYSEVRNRLIDK 459



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G +D K+ +  A+    +  +    L  E  PK ILL GP G GKT +++ +A  +
Sbjct: 544 EDIGGLEDVKQELREAVEWPLKYPKAFERLGIE-PPKGILLYGPPGTGKTLLAKAVANES 602

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEV---REQASINAE 131
            A FI +   +     +VG     + +I R     A  +V     D +   R        
Sbjct: 603 QANFIAIRGPEVL-SKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPARGSEGDRVT 661

Query: 132 ERILDAL 138
           +R+++ L
Sbjct: 662 DRLINQL 668


>gi|114321705|ref|YP_743388.1| ATPase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228099|gb|ABI57898.1| ATPase AAA-2 domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 864

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  E+ + ++GQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 561 MEEEIRKRVVGQDEAVAAVANAIR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V++++F E   V R
Sbjct: 615 KALASFLFDTEEAMIRVDMSEFMEKHAVAR 644


>gi|329912608|ref|ZP_08275778.1| ClpB protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327545580|gb|EGF30751.1| ClpB protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 867

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AV+ A+R      +  A L D   P  + + +GPTGVGKT + 
Sbjct: 568 MEDFLHQRVIGQHEAIVAVSDAIR------RSRAGLSDPNRPYGSFMFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I++++++F E            GYVG +    + + V      V  
Sbjct: 622 KALAGFLFDTEESMIRIDMSEFMEKHSVARLIGAPPGYVGYDEGGFLTEAVRRRPYSV-- 679

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +    +L  L
Sbjct: 680 ILLDEV-EKAHQDVFNVLLQVL 700


>gi|311693420|gb|ADP96293.1| protein disaggregation chaperone [marine bacterium HP15]
          Length = 858

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 562 MEEALHGRVIGQDEAVEAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALASFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|297520014|ref|ZP_06938400.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           OP50]
          Length = 383

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 73  TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 127

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 128 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 183


>gi|282899553|ref|ZP_06307517.1| ATPase [Cylindrospermopsis raciborskii CS-505]
 gi|281195432|gb|EFA70365.1| ATPase [Cylindrospermopsis raciborskii CS-505]
          Length = 891

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ++A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 573 KLEHHLHERVIGQEEAVLAVSAAIR------RARAGMKDPSRPIGSFLFMGPTGVGKTEL 626

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         ++++++++ E   V R V
Sbjct: 627 ARALAQFLFDSEDALVRLDMSEYMEKHSVSRLV 659


>gi|227544679|ref|ZP_03974728.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300909079|ref|ZP_07126542.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
 gi|227185325|gb|EEI65396.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A]
 gi|300894486|gb|EFK87844.1| cell division protein FtsH [Lactobacillus reuteri SD2112]
          Length = 702

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  +G PF  +  + F
Sbjct: 210 IVEFLKNPKKFTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDF 264

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 265 VEM-FVGVGASRV-RDLFDQA 283


>gi|294815367|ref|ZP_06774010.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443720|ref|ZP_08218454.1| cell division protein FtsH-like protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327966|gb|EFG09609.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064]
          Length = 677

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 30  VAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           V   L+N   +RR           MP  +LL GP G GKT ++R +A  AG PF     +
Sbjct: 248 VVDFLKNPRPYRRMGA-------RMPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASAS 300

Query: 88  KFTEIGYVGRNVEQIIRDLVDVA 110
           +F E+  VG    ++ R+L   A
Sbjct: 301 EFIEM-IVGVGAGRV-RELFAEA 321


>gi|116327125|ref|YP_796845.1| ATP-dependent Clp protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332218|ref|YP_801936.1| ATP-dependent Clp protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119869|gb|ABJ77912.1| ATP-dependent Clp protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125907|gb|ABJ77178.1| ATP-dependent Clp protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 847

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + I+GQ++A   +A A+     R+       +     + + +GPTGVGKT +++
Sbjct: 515 LEDELKKRIVGQEEAIEKIAKAV-----RRARTGFKSERRPTGSFIFLGPTGVGKTELAK 569

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          ++V+++++ E   V R
Sbjct: 570 ALANFLFGNDDAMLRVDMSEYMEPHAVSR 598


>gi|9651530|gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
          Length = 977

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 654 LEQVLHNRVVGQDIAVKSVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELA 707

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 708 KALAGYLFNTENALVRIDMSEYMEKHAVSRLV 739


>gi|72014272|ref|XP_786389.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115942227|ref|XP_001188847.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 525

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ  A   VA A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 160 LEQRLTEFIIGQDGAIATVAAAVR------RKENGWMDEDHPLVFLFLGSSGIGKTELAK 213

Query: 72  RLARLAGAP----FIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAIN 112
           ++AR         FI+++++++ E            GYVG +    +   +    N
Sbjct: 214 QIARYMHKDVKNGFIRMDMSEYQEKHEVAKFIGAPPGYVGHDQGGQLTKKLKQNPN 269


>gi|53712497|ref|YP_098489.1| endopeptidase Clp ATP-binding chain B [Bacteroides fragilis YCH46]
 gi|253563472|ref|ZP_04840929.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 3_2_5]
 gi|52215362|dbj|BAD47955.1| endopeptidase Clp ATP-binding chain B [Bacteroides fragilis YCH46]
 gi|251947248|gb|EES87530.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 3_2_5]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIAAVSDAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|329121006|ref|ZP_08249637.1| ATPase [Dialister micraerophilus DSM 19965]
 gi|327471168|gb|EGF16622.1| ATPase [Dialister micraerophilus DSM 19965]
          Length = 806

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A ++D   P  + + +G TGVGKT ++
Sbjct: 497 LEDELKKRVIGQDEAIHAVAQAIR------RARAGMKDPKHPIGSFIFLGSTGVGKTELA 550

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA       +  ++ +++++ E            GYVG +
Sbjct: 551 RALAEYMFGNESALVRFDMSEYMEKHEVSRLIGAPPGYVGYD 592


>gi|294828029|ref|NP_712285.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385876|gb|AAN49303.2| ATP-dependent protease ClpP [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 758

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL   I GQ  A   +  ++     R              + L  GPTGVGKT +
Sbjct: 458 KNLDEELKAKIYGQDSAIDQLVQSI-----RLSRSGLSEPGKPVGSFLFAGPTGVGKTEL 512

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101
           +R+LA + G   I+ +++++ E   V R +  
Sbjct: 513 TRKLAEILGVELIRFDMSEYMEKHTVSRLIGS 544


>gi|251809941|ref|ZP_04824414.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875025|ref|ZP_06283900.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis SK135]
 gi|251806484|gb|EES59141.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296353|gb|EFA88872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis SK135]
 gi|329729477|gb|EGG65880.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU144]
 gi|329734648|gb|EGG70955.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU028]
          Length = 817

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHKRVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 44.1 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L K + + I+T   + L  +    +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHR----LSEQNINIVVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHD 797


>gi|225436170|ref|XP_002266075.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296090151|emb|CBI39970.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 29/200 (14%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPA--DLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            + G ++A   +   +    +  + P   D      P  +LL GP G GKT +++ +A  
Sbjct: 396 DVAGIEEAVEELQELV----KYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 451

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
           AG PF ++  ++F E+  VG    +I RDL           +R +V + + I  +E  +D
Sbjct: 452 AGVPFYQMAGSEFVEV-LVGVGSARI-RDLF----------KRAKVNKPSVIFIDE--ID 497

Query: 137 ALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193
           AL  +     + +T  ++    ++ E +  ++ IE+    +      +      G  N  
Sbjct: 498 ALATRRQGIFSESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL------GATNRM 551

Query: 194 ELFSKVMGSGRKKKIRMSVQ 213
           +L    +    +   ++ ++
Sbjct: 552 DLLDPALLRPGRFDRKIRIR 571


>gi|206889700|ref|YP_002248469.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741638|gb|ACI20695.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 603

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 36  NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95
           N  +  +L A +     PK ILLVG  G GKT +++ +A  AG PF  +  + F E+ +V
Sbjct: 178 NPQKYIKLGAKI-----PKGILLVGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FV 231

Query: 96  GRNVEQIIRDLVDVAINI 113
           G    ++ RDL D A   
Sbjct: 232 GVGASRV-RDLFDQAKKN 248


>gi|157738128|ref|YP_001490812.1| ATP-dependent Clp protease, ATP-binding subunit [Arcobacter
           butzleri RM4018]
 gi|157699982|gb|ABV68142.1| ATP-dependent Clp protease, ATP-binding subunit [Arcobacter
           butzleri RM4018]
          Length = 737

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   + + + GQ  A   +  A+    +R +    L D+    + L  GPTGVGKT +
Sbjct: 444 KNLEKNMQKRVFGQDTAISTIVQAI----KRNKAGLGL-DKKPIGSFLFTGPTGVGKTEV 498

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R L+   G  F + +++++ E   V R
Sbjct: 499 ARELSLQMGIHFERFDMSEYMEAHTVSR 526


>gi|15644914|ref|NP_207084.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|2313382|gb|AAD07354.1| cell division protein (ftsH) [Helicobacter pylori 26695]
          Length = 550

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNALKHQRTEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 AESDILEVKDKIA 398


>gi|311898554|dbj|BAJ30962.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 630

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 122/377 (32%), Gaps = 35/377 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  + +  ++  + +  +  Q    L    MP+ +LL GP G GKT ++R +A  A
Sbjct: 192 KDVAGIDEVRDELSEVV-DFLKNPQAYRKLGA-KMPRGVLLSGPPGTGKTLLARAVAGEA 249

Query: 78  GAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA--------- 126
             PF     ++F E  +G     V ++  +   VA  IV     D +  Q          
Sbjct: 250 DVPFFSASASEFIEMIVGVGASRVRELFSEARKVAPAIVFIDEIDTIGRQRGGGGGMGGH 309

Query: 127 --SINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
                   +IL  + G + +         N  E+    L      D+ I +   D +   
Sbjct: 310 DEREQTLNQILTEMDGFSGSEGVIVIAATNRAEILDPALLRPGRFDRRITVSPPDRTGRE 369

Query: 177 SNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
               I      +      +  ++         +   V +     ++ + D  +D + +  
Sbjct: 370 QILRIHTREVPLAEGTDLDTVARTTPGMTGADLANLVNEAALIAVKRKQDA-VDQENLS- 427

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295
           ++++ V+      L     +V            E     L  L  G+    K   +    
Sbjct: 428 EALEKVQ------LGAVRPLVMPQQERERTAFHESGHALLGMLQPGADPVRKITIVPRGR 481

Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL-ILTDTESNLILQYKELMK 354
            L +        R +   P ++GR  +   L  +        ++T    + + Q   + +
Sbjct: 482 ALGVTLSTPDTDRYSYTEPYLRGR--IIGALGGMAAEQVVYGVVTTGAESDLEQLTTIAR 539

Query: 355 TEGIILDFTEDSIDALA 371
           +       ++      A
Sbjct: 540 SMAGRWGMSDRVGRVTA 556


>gi|307136873|ref|ZP_07496229.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           H736]
 gi|331640734|ref|ZP_08341874.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H736]
 gi|331040017|gb|EGI12232.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia
           coli H736]
          Length = 448

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 138 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 192

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 193 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 248


>gi|300690671|ref|YP_003751666.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ralstonia
           solanacearum PSI07]
 gi|299077731|emb|CBJ50369.2| ATP-dependent Clp protease ATP-binding subunit clpA [Ralstonia
           solanacearum PSI07]
          Length = 762

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ+ A  A+A A++            + +    + L  GPTGVGKT +++
Sbjct: 453 LERDLKSVVFGQEPAIDALASAIK-----MSRAGLGKTDKPIGSFLFSGPTGVGKTEVAK 507

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA + G   I+ +++++ E            GYVG +   ++ + +    + 
Sbjct: 508 QLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC 560


>gi|238062033|ref|ZP_04606742.1| ATPase [Micromonospora sp. ATCC 39149]
 gi|237883844|gb|EEP72672.1| ATPase [Micromonospora sp. ATCC 39149]
          Length = 832

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 536 MEESLGARVVGQTEAVSAVSDAV-----RRARAGVADPDRPTGSFLFLGPTGVGKTELAK 590

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 591 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 621


>gi|238855043|ref|ZP_04645371.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260664827|ref|ZP_05865678.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|282934829|ref|ZP_06340063.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313472619|ref|ZP_07813108.1| cell division protein FtsH [Lactobacillus jensenii 1153]
 gi|238832287|gb|EEQ24596.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3]
 gi|260561310|gb|EEX27283.1| cell division protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301101|gb|EFA93411.1| cell division protease FtsH [Lactobacillus jensenii 208-1]
 gi|313448962|gb|EEQ68431.2| cell division protein FtsH [Lactobacillus jensenii 1153]
          Length = 708

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA 281


>gi|213965100|ref|ZP_03393298.1| ATP-dependent chaperone ClpB [Corynebacterium amycolatum SK46]
 gi|213952214|gb|EEB63598.1| ATP-dependent chaperone ClpB [Corynebacterium amycolatum SK46]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 22/142 (15%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L R ++GQ  A  AV+ A+     R+             + L +GPTGVGKT ++
Sbjct: 564 EMELNLGRRVVGQNAAVEAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          ++++++++ E            GYVG +    + + V      V  
Sbjct: 619 KALAEFLFDDERAMVRIDMSEYGEKHSVARLIGAPPGYVGYDAGGQLTEAVRRRPYTV-- 676

Query: 117 SRRDEVREQASINAEERILDAL 138
              DEV E+A  +  + +L  L
Sbjct: 677 VLFDEV-EKAHPDVFDVLLQVL 697


>gi|60680697|ref|YP_210841.1| putative heat shock ClpB protein [Bacteroides fragilis NCTC 9343]
 gi|265762660|ref|ZP_06091228.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_16]
 gi|60492131|emb|CAH06894.1| putative heat shock ClpB protein [Bacteroides fragilis NCTC 9343]
 gi|263255268|gb|EEZ26614.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_16]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIAAVSDAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|84393598|ref|ZP_00992351.1| ClpB protein [Vibrio splendidus 12B01]
 gi|84375807|gb|EAP92701.1| ClpB protein [Vibrio splendidus 12B01]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQAEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
                     +++++++F E   V R V
Sbjct: 620 NFMFDSDDAMVRIDMSEFMEKHSVARLV 647


>gi|126173263|ref|YP_001049412.1| ATPase [Shewanella baltica OS155]
 gi|152999622|ref|YP_001365303.1| ATPase [Shewanella baltica OS185]
 gi|160874241|ref|YP_001553557.1| ATPase AAA-2 domain-containing protein [Shewanella baltica OS195]
 gi|217974426|ref|YP_002359177.1| ATP-dependent chaperone ClpB [Shewanella baltica OS223]
 gi|304410380|ref|ZP_07391998.1| ATP-dependent chaperone ClpB [Shewanella baltica OS183]
 gi|307304472|ref|ZP_07584222.1| ATP-dependent chaperone ClpB [Shewanella baltica BA175]
 gi|125996468|gb|ABN60543.1| ATPase AAA-2 domain protein [Shewanella baltica OS155]
 gi|151364240|gb|ABS07240.1| ATPase AAA-2 domain protein [Shewanella baltica OS185]
 gi|160859763|gb|ABX48297.1| ATP-dependent chaperone ClpB [Shewanella baltica OS195]
 gi|217499561|gb|ACK47754.1| ATP-dependent chaperone ClpB [Shewanella baltica OS223]
 gi|304350864|gb|EFM15264.1| ATP-dependent chaperone ClpB [Shewanella baltica OS183]
 gi|306911874|gb|EFN42298.1| ATP-dependent chaperone ClpB [Shewanella baltica BA175]
 gi|315266475|gb|ADT93328.1| ATP-dependent chaperone ClpB [Shewanella baltica OS678]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHERVIGQNEAVDAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R      +  +++++++F E   V R V
Sbjct: 620 RFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|330977495|gb|EGH77441.1| AAA ATPase, central region [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 854

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|302335816|ref|YP_003801023.1| ATPase AAA-2 domain protein [Olsenella uli DSM 7084]
 gi|301319656|gb|ADK68143.1| ATPase AAA-2 domain protein [Olsenella uli DSM 7084]
          Length = 761

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 21/118 (17%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L+R ++GQ +A   V+  +R      ++ A L D   P    L +GPTGVGKT +
Sbjct: 458 KMEEALERRVVGQDEAVSVVSKTIR------RVRAGLSDPRRPGGSFLFLGPTGVGKTEL 511

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINI 113
           ++ LA          I  +++++ E            GYVG +    +   V +    
Sbjct: 512 AKALAEFLFGSEGSLITFDMSEYMEKFAVSRLIGAPPGYVGYDEGGQLTKAVRLHPYS 569


>gi|168701615|ref|ZP_02733892.1| ATPase AAA-2 domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 871

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AV  A+       +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 564 LEAELHKRVIGQDEAVTAVGEAV------VRARSGLKDPNRPIGSFIFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+++++++ E   V R V
Sbjct: 618 RALAEFLFDDEKAMIRIDMSEYQEKHTVSRLV 649


>gi|167767829|ref|ZP_02439882.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
 gi|167710568|gb|EDS21147.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1]
          Length = 598

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  R  ++ A +     PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 166 LKNPGRFIKIGARI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 219

Query: 94  YVGRNVEQIIRDLVDVAINI 113
           +VG    ++ RDL   A   
Sbjct: 220 FVGVGAARV-RDLFAEAKKH 238


>gi|152993046|ref|YP_001358767.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfurovum
           sp. NBC37-1]
 gi|151424907|dbj|BAF72410.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfurovum
           sp. NBC37-1]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I S L   ++GQ++A +AVA A++      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 564 IESILKEEVVGQEEALKAVARAIK------RNKAGLSDVNRPIGSFMFLGPTGVGKTQVA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+         I+++++++ E     R V
Sbjct: 618 KTLAKFLFDSEKSLIRIDMSEYMEKHAASRLV 649


>gi|91211926|ref|YP_541912.1| protein disaggregation chaperone [Escherichia coli UTI89]
 gi|117624816|ref|YP_853729.1| protein disaggregation chaperone [Escherichia coli APEC O1]
 gi|237706819|ref|ZP_04537300.1| heat shock protein [Escherichia sp. 3_2_53FAA]
 gi|91073500|gb|ABE08381.1| heat shock protein [Escherichia coli UTI89]
 gi|115513940|gb|ABJ02015.1| heat shock protein [Escherichia coli APEC O1]
 gi|226899859|gb|EEH86118.1| heat shock protein [Escherichia sp. 3_2_53FAA]
 gi|315284809|gb|EFU44254.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 110-3]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|74316833|ref|YP_314573.1| ClpB protein [Thiobacillus denitrificans ATCC 25259]
 gi|74056328|gb|AAZ96768.1| ClpB protein [Thiobacillus denitrificans ATCC 25259]
          Length = 859

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 563 MEDHLHGRVVGQDEAVAVVSDAIR------RSRAGLSDPNRPLGSFLFLGPTGVGKTELC 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 617 KTLAEYLFDSAEHMVRIDMSEFMEKHSVAR 646


>gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 370

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 11  EIVSELDRY------IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61
           +I   L ++      ++GQ  AK   + +   L N  + +           P+NIL  G 
Sbjct: 111 KIKQTLSKHEYKVSDVVGQTKAKNKAKIITNYLENPDKFKNWA--------PRNILFYGR 162

Query: 62  TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            G GKT +++ LA     P   ++ T       VG    QI                 DE
Sbjct: 163 PGTGKTMLAQALANELNVPIHMIKATSLIGNH-VGDGANQIHELYKQARYTKPTVIFIDE 221

Query: 122 VREQASIN 129
           +   A   
Sbjct: 222 IDAIALER 229


>gi|15803116|ref|NP_289147.1| protein disaggregation chaperone [Escherichia coli O157:H7 EDL933]
 gi|26248955|ref|NP_754995.1| protein disaggregation chaperone [Escherichia coli CFT073]
 gi|227888159|ref|ZP_04005964.1| endopeptidase Clp [Escherichia coli 83972]
 gi|254037669|ref|ZP_04871727.1| heat shock protein [Escherichia sp. 1_1_43]
 gi|291283865|ref|YP_003500683.1| Heat shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|293406102|ref|ZP_06650028.1| disaggregation chaperone [Escherichia coli FVEC1412]
 gi|293415865|ref|ZP_06658505.1| ATP-dependent chaperone ClpB [Escherichia coli B185]
 gi|293448944|ref|ZP_06663365.1| ATP-dependent chaperone ClpB [Escherichia coli B088]
 gi|298381834|ref|ZP_06991431.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Escherichia
           coli FVEC1302]
 gi|300819934|ref|ZP_07100117.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 107-1]
 gi|300900222|ref|ZP_07118408.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 198-1]
 gi|300905088|ref|ZP_07122895.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 84-1]
 gi|300921136|ref|ZP_07137517.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 115-1]
 gi|300922524|ref|ZP_07138633.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 182-1]
 gi|300930683|ref|ZP_07146067.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 187-1]
 gi|300940371|ref|ZP_07154959.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 21-1]
 gi|300948986|ref|ZP_07163042.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 116-1]
 gi|300957375|ref|ZP_07169592.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 175-1]
 gi|300976570|ref|ZP_07173522.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 200-1]
 gi|300986851|ref|ZP_07177834.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 45-1]
 gi|301026352|ref|ZP_07189800.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 69-1]
 gi|301050461|ref|ZP_07197343.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 185-1]
 gi|301305762|ref|ZP_07211849.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 124-1]
 gi|301326708|ref|ZP_07220026.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 78-1]
 gi|301644034|ref|ZP_07244052.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 146-1]
 gi|309794105|ref|ZP_07688529.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 145-7]
 gi|331643309|ref|ZP_08344440.1| ATP-dependent chaperone protein ClpB [Escherichia coli H736]
 gi|331648336|ref|ZP_08349424.1| ATP-dependent chaperone protein ClpB [Escherichia coli M605]
 gi|331678586|ref|ZP_08379260.1| ATP-dependent chaperone protein ClpB [Escherichia coli H591]
 gi|332280712|ref|ZP_08393125.1| heat shock protein [Shigella sp. D9]
 gi|25289895|pir||E85905 heat shock protein [imported] - Escherichia coli (strain O157:H7,
           substrain EDL933)
 gi|12517013|gb|AAG57705.1|AE005489_4 heat shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109361|gb|AAN81563.1|AE016764_245 ClpB protein [Escherichia coli CFT073]
 gi|209762698|gb|ACI79661.1| heat shock protein [Escherichia coli]
 gi|209762700|gb|ACI79662.1| heat shock protein [Escherichia coli]
 gi|209762702|gb|ACI79663.1| heat shock protein [Escherichia coli]
 gi|209762704|gb|ACI79664.1| heat shock protein [Escherichia coli]
 gi|209762706|gb|ACI79665.1| heat shock protein [Escherichia coli]
 gi|226839293|gb|EEH71314.1| heat shock protein [Escherichia sp. 1_1_43]
 gi|227834799|gb|EEJ45265.1| endopeptidase Clp [Escherichia coli 83972]
 gi|290763738|gb|ADD57699.1| Heat shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|291322034|gb|EFE61463.1| ATP-dependent chaperone ClpB [Escherichia coli B088]
 gi|291426108|gb|EFE99140.1| disaggregation chaperone [Escherichia coli FVEC1412]
 gi|291432054|gb|EFF05036.1| ATP-dependent chaperone ClpB [Escherichia coli B185]
 gi|298276974|gb|EFI18490.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Escherichia
           coli FVEC1302]
 gi|300297832|gb|EFJ54217.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 185-1]
 gi|300308512|gb|EFJ63032.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 200-1]
 gi|300315878|gb|EFJ65662.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 175-1]
 gi|300356257|gb|EFJ72127.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 198-1]
 gi|300395567|gb|EFJ79105.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 69-1]
 gi|300403015|gb|EFJ86553.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 84-1]
 gi|300407861|gb|EFJ91399.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 45-1]
 gi|300411909|gb|EFJ95219.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 115-1]
 gi|300421136|gb|EFK04447.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 182-1]
 gi|300451543|gb|EFK15163.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 116-1]
 gi|300454825|gb|EFK18318.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 21-1]
 gi|300461457|gb|EFK24950.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 187-1]
 gi|300527522|gb|EFK48584.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 107-1]
 gi|300839016|gb|EFK66776.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 124-1]
 gi|300846631|gb|EFK74391.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 78-1]
 gi|301077608|gb|EFK92414.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 146-1]
 gi|308122010|gb|EFO59272.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 145-7]
 gi|315253120|gb|EFU33088.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 85-1]
 gi|315290939|gb|EFU50304.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 153-1]
 gi|324005832|gb|EGB75051.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 57-2]
 gi|324012458|gb|EGB81677.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 60-1]
 gi|324016581|gb|EGB85800.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 117-3]
 gi|331036780|gb|EGI09004.1| ATP-dependent chaperone protein ClpB [Escherichia coli H736]
 gi|331042083|gb|EGI14225.1| ATP-dependent chaperone protein ClpB [Escherichia coli M605]
 gi|331073416|gb|EGI44737.1| ATP-dependent chaperone protein ClpB [Escherichia coli H591]
 gi|332103064|gb|EGJ06410.1| heat shock protein [Shigella sp. D9]
          Length = 861

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|330971942|gb|EGH72008.1| AAA ATPase, central region [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 854

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|302879453|ref|YP_003848017.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Gallionella
           capsiferriformans ES-2]
 gi|302582242|gb|ADL56253.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Gallionella
           capsiferriformans ES-2]
          Length = 746

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+A A++              +    + L  GPTGVGKT +
Sbjct: 445 KNLDRDLKATVFGQNKAIDALARAIK-----MSRSGLGNPQKPIGSFLFSGPTGVGKTEV 499

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +R+LA   G P  + +++++ E            GYVG +   ++ + +    + 
Sbjct: 500 ARQLAFAMGMPLHRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAISKQPHC 554


>gi|242372741|ref|ZP_04818315.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
 gi|242349514|gb|EES41115.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
          Length = 818

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 43.4 bits (101), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L+K + + I+T   + L  +    +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLSKEELKEIVTMMVNKLTAR----LSEQNINIVVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVID 415
             +      + GAR L + +   +E  L ++    + ++ K V ID
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTID 795


>gi|296126118|ref|YP_003633370.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
 gi|296017934|gb|ADG71171.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
          Length = 701

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E V    + + G ++AK  +   ++   +       L  ++ PK +LLVGP G GKT +
Sbjct: 173 KEDVKVTFKDVEGCKEAKEELQEVVQ-FLKDASKFTKLGAKI-PKGVLLVGPPGTGKTLL 230

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++ +A  A  PF  +  ++F E+ +VG    ++ RDL + 
Sbjct: 231 AKAVAGEANVPFFSMSGSEFVEM-FVGVGASRV-RDLFEQ 268


>gi|308370390|ref|ZP_07421333.2| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu003]
 gi|308375144|ref|ZP_07442858.2| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu007]
 gi|4098131|gb|AAD00218.1| clpB [Mycobacterium bovis]
 gi|308332178|gb|EFP21029.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu003]
 gi|308347335|gb|EFP36186.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu007]
 gi|323721237|gb|EGB30297.1| endopeptidase subunit ATP binding protein B ClpB [Mycobacterium
           tuberculosis CDC1551A]
          Length = 877

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A  AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 593 MEDELGKRVIGQKAAVTAVSDAVR------RSRAGVSDPNRPTGAFMFLGPTGVGKTELA 646

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 647 KALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRR 700


>gi|147365|gb|AAA24422.1| ATP-dependent protease binding subunit [Escherichia coli]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|30063993|ref|NP_838164.1| protein disaggregation chaperone [Shigella flexneri 2a str. 2457T]
 gi|110806537|ref|YP_690057.1| protein disaggregation chaperone [Shigella flexneri 5 str. 8401]
 gi|54035804|sp|Q7UBW5|CLPB_SHIFL RecName: Full=Chaperone protein ClpB
 gi|30042249|gb|AAP17974.1| heat shock protein [Shigella flexneri 2a str. 2457T]
 gi|110616085|gb|ABF04752.1| heat shock protein [Shigella flexneri 5 str. 8401]
 gi|281602004|gb|ADA74988.1| Chaperone protein clpB [Shigella flexneri 2002017]
 gi|313648272|gb|EFS12716.1| ATP-dependent chaperone ClpB [Shigella flexneri 2a str. 2457T]
 gi|332753866|gb|EGJ84243.1| ATP-dependent chaperone ClpB [Shigella flexneri 4343-70]
 gi|332755659|gb|EGJ86022.1| ATP-dependent chaperone ClpB [Shigella flexneri 2747-71]
 gi|332997821|gb|EGK17431.1| ATP-dependent chaperone ClpB [Shigella flexneri K-218]
 gi|333015833|gb|EGK35169.1| ATP-dependent chaperone ClpB [Shigella flexneri K-304]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|187733901|ref|YP_001881380.1| protein disaggregation chaperone [Shigella boydii CDC 3083-94]
 gi|187430893|gb|ACD10167.1| ATP-dependent chaperone protein ClpB [Shigella boydii CDC 3083-94]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|330941203|gb|EGH44077.1| AAA ATPase, central region [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 854

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|257463148|ref|ZP_05627549.1| cell division protein ftsH [Fusobacterium sp. D12]
          Length = 729

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +AK     V   LR   + +++ A +     PK +LL+G  G GKT +++ +A 
Sbjct: 283 DVAGIDEAKHELEEVVEFLREPEKFKKIGARI-----PKGVLLLGSPGTGKTLLAKAVAG 337

Query: 76  LAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
            A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 338 EAKVPFFSMSGSEFVEM-FVGVGASRVRDLFAKARKNAPCIVFIDEIDAVGRK 389


>gi|254574458|ref|XP_002494338.1| hypothetical protein [Pichia pastoris GS115]
 gi|238034137|emb|CAY72159.1| hypothetical protein PAS_chr4_0889 [Pichia pastoris GS115]
 gi|328353845|emb|CCA40242.1| Mitochondrial member of the AAA family of ATPases [Pichia pastoris
           CBS 7435]
          Length = 686

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 25/169 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+     +   L++  +   L   L     PK +LL GP G GKT ++R  A
Sbjct: 219 DDVCGVDEARAELEEIVEFLKDPQKFTNLGGKL-----PKGVLLTGPPGTGKTLLARATA 273

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             AG PF  +  ++F E+ YVG   +++ R+L   A            +  A I  +E  
Sbjct: 274 GEAGVPFFFMSGSEFDEL-YVGVGAKRV-RELFADA----------RAKSPAIIFIDE-- 319

Query: 135 LDALVG---KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           LDA+ G       ++ ++   + L + +   +   I +   ++   + D
Sbjct: 320 LDAIGGKRNPKDQAHAKQTLNQLLVELDGFSQTEGIIIIGATNFPESLD 368


>gi|224538942|ref|ZP_03679481.1| hypothetical protein BACCELL_03839 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519460|gb|EEF88565.1| hypothetical protein BACCELL_03839 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 862

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA       +   +++++++ E   V R V
Sbjct: 614 KALAEFLFDDESMMTRIDMSEYQEKHSVSRLV 645


>gi|260809218|ref|XP_002599403.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
 gi|229284681|gb|EEN55415.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
          Length = 396

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK  +   +     R  +   LR    PK +LL GP G GKT I + +A  +
Sbjct: 122 DDIAGLEFAKATIKEIVIWPMLRPDIFKGLRGP--PKGLLLFGPPGTGKTLIGKCIASQS 179

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           GA F  +  +  T   +VG   E+++R L  VA    
Sbjct: 180 GATFFSISASSLT-SKWVGEG-EKLVRALFAVARCHQ 214


>gi|197294583|ref|YP_001799124.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853910|emb|CAM11873.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 426

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 18  RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + I G    K+    +   L+N  + + L  ++     PK +LL GP G GKT +++ LA
Sbjct: 176 QDIAGLDKEKKEIYELVDFLKNPTKYKNLGINI-----PKGVLLYGPPGTGKTLLAKALA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108
                PF     ++F E+ YVG    +I R++  
Sbjct: 231 NELEFPFYFFSGSEFVEM-YVGLGAARI-RNMFQ 262


>gi|124267647|ref|YP_001021651.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Methylibium
           petroleiphilum PM1]
 gi|124260422|gb|ABM95416.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Methylibium
           petroleiphilum PM1]
          Length = 774

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 100/262 (38%), Gaps = 28/262 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+A A++            + +    + L  GPTGVGKT  
Sbjct: 462 KNLDRDLKSVVFGQDPALDALASAIK-----MARSGLGKPDKPIGSFLFSGPTGVGKTEA 516

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESR 118
           +++LA + G   ++ +++++ E            GYVG +   ++ + V    + V    
Sbjct: 517 AKQLAFILGIELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTEAVTKKPHCVL--L 574

Query: 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
            DE+ E+A  +    +L  +   T T N         R  +  +  I +     +  ++ 
Sbjct: 575 LDEI-EKAHPDVFNVLLQVMDHGTLTDNNG-------RKADFRNVIIIMTTNAGAETMNK 626

Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
             I    +    +      ++     + ++   V   +  L  +   R++D   +  +S 
Sbjct: 627 STIGFTNARESGDEMADIKRLFTPEFRNRLDAIVS--FRALDEEIILRVVDKFLLQLESQ 684

Query: 239 QMVENYGIVFLDEFDKIVARDS 260
              +   + F D   K +A+  
Sbjct: 685 LAEKKVDVTFSDALRKHLAKKG 706


>gi|170723706|ref|YP_001751394.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
 gi|169761709|gb|ACA75025.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
          Length = 854

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  A L D   P    + +GPTGVGKT +
Sbjct: 561 KMEDLLHQRVIGQHEAVTAVANAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|56480150|ref|NP_708444.2| protein disaggregation chaperone [Shigella flexneri 2a str. 301]
 gi|56383701|gb|AAN44151.2| heat shock protein [Shigella flexneri 2a str. 301]
          Length = 857

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|66043993|ref|YP_233834.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254700|gb|AAY35796.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 854

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|125775093|ref|XP_001358798.1| GA19274 [Drosophila pseudoobscura pseudoobscura]
 gi|121991043|sp|Q298L4|SPAST_DROPS RecName: Full=Spastin
 gi|54638539|gb|EAL27941.1| GA19274 [Drosophila pseudoobscura pseudoobscura]
          Length = 788

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 514 DIAGQEVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 571

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 572 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHLQ 605


>gi|323978455|gb|EGB73539.1| ATP-dependent chaperone ClpB [Escherichia coli TW10509]
          Length = 857

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|320588326|gb|EFX00795.1| aaa family ATPase [Grosmannia clavigera kw1407]
          Length = 846

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I G + AK+A+  A+   + R  L   LR+      +LL GP G GKT ++R +A  + 
Sbjct: 560 DIAGLEPAKKALREAVVYPFLRPDLFMGLREP--ATGMLLFGPPGTGKTMLARAVATESR 617

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 618 STFFSISASSLT-SKYLGES-EKLVRALFVLA 647


>gi|319789343|ref|YP_004150976.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
 gi|317113845|gb|ADU96335.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
          Length = 824

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  EL + ++GQ +A  AVA A+    +R +L             L +GPTGVGKT +
Sbjct: 497 KRLEEELHKRVVGQHEAVEAVAKAI----KRSRLGIRANVNRPIGCFLFLGPTGVGKTEL 552

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           ++ LA          I+++++++ E   V R +      +       + E+ R +
Sbjct: 553 AKALAEYLFGDEKALIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGQLTEAVRRK 607


>gi|297181313|gb|ADI17504.1| hypothetical protein [uncultured bacterium HF0130_06E03]
          Length = 821

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L   I+GQ+ A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 501 MESKLKERIVGQEQAIAAVSRAIR------RTRAGLQDPRQPIGSFIFLGPTGVGKTELA 554

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +RLA          I V+++++ E            GYVG +
Sbjct: 555 KRLAEFLFDDEDALISVDMSEYMEKFAVSRLIGAPPGYVGFD 596



 Score = 41.1 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 111/332 (33%), Gaps = 52/332 (15%)

Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172
             R+   + VR++     E+ I   +   T    TR    +  R   +  K  +  V   
Sbjct: 454 KKRQEWEERVRDEVVSVTEDDIAGVISSMTGIPITRLAKSESDRLLAMESKLKERIVGQE 513

Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI--DM 230
            +  +          G+ +  +     +  G     +  + K   E + D+ D LI  DM
Sbjct: 514 QAIAAVSRAIRRTRAGLQDPRQPIGSFIFLGPTGVGKTELAKRLAEFLFDDEDALISVDM 573

Query: 231 -DTVHRDSIQMV----------------------ENYGIVFLDEFDK---------IVAR 258
            + + + ++  +                        Y ++ LDE +K         +   
Sbjct: 574 SEYMEKFAVSRLIGAPPGYVGFDEGGQLTEKVRRRPYSVILLDEIEKAHPDVFNILLQIL 633

Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTK---------YGSINTDHILFIASGAFHVSRP 309
           D G     +   V      L+  S++ ++         +   +T+ +  +  G  + +  
Sbjct: 634 DEGRLTDSNGRKVDFSNTVLIMTSNIGSRDVGTGGVLGFQKSDTETLHGLMEGKINDALK 693

Query: 310 ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369
               PE   R    +   +L +     I+   +  L  Q+K  +  + I L  T  +   
Sbjct: 694 KTFNPEFINRVDESLIFHALTEEHINQII---DIAL-DQFKNRLTEQDISLRVTPGAKSL 749

Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401
           + +   +L       GAR L+  M+++LED  
Sbjct: 750 MVEKGFDL-----AFGARYLKRTMQKMLEDPL 776


>gi|302390907|ref|YP_003826727.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum
           DSM 5501]
 gi|302202984|gb|ADL11662.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum
           DSM 5501]
          Length = 651

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           +PK +LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL + 
Sbjct: 188 IPKGVLLVGPPGTGKTLMARAVAGEAGVPFFIISGSDFVEM-FVGVGASRV-RDLFEQ 243


>gi|302307871|ref|NP_984638.2| AEL223Cp [Ashbya gossypii ATCC 10895]
 gi|299789209|gb|AAS52462.2| AEL223Cp [Ashbya gossypii ATCC 10895]
          Length = 803

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ +A  A+  A+     R Q       +    + + +GPTG GKT +++
Sbjct: 484 MEQSLTKRVVGQDEAISAICQAV-----RLQRAGLTSSKRPIASFMFLGPTGTGKTELTK 538

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            L+       +  I+ ++++F E   V R +      ++  +   + E+ R +
Sbjct: 539 ALSEFLFDNESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRK 591


>gi|289767057|ref|ZP_06526435.1| chaperone [Streptomyces lividans TK24]
 gi|289697256|gb|EFD64685.1| chaperone [Streptomyces lividans TK24]
          Length = 837

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+   I+GQ +A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 530 LEEEMHARIVGQDEAVTAVSRAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELAK 584

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA L        I+ ++++F E   V R V
Sbjct: 585 TLAELLFGEENRMIRFDMSEFQEKHTVARLV 615


>gi|302559501|ref|ZP_07311843.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000]
 gi|302477119|gb|EFL40212.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDEIGKRLIGQTEAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|302555193|ref|ZP_07307535.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
 gi|302472811|gb|EFL35904.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
           40736]
          Length = 842

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+       +  A L +   P  + L +GPTGVGKT ++
Sbjct: 533 LEEHLHQRVVGQDEAVRVVSDAV------LRSRAGLANPDRPIGSFLFLGPTGVGKTELA 586

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          ++++++++ E   V R
Sbjct: 587 RALAEALFGSEDRMVRLDMSEYQERHTVSR 616



 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 43/280 (15%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +A+    I +F   G   VG   L+   ++ +     + +R+ + +      R    RLI
Sbjct: 562 LANPDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSE---YQERHTVSRLI 618

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     +      +     Y ++ LDE +K         +   D G         V
Sbjct: 619 GAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTV 678

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAF--HVSRPADLL--------PEIQGRFP 321
                 +V  S++ ++  +       F A GA     +R   +L        PE   R  
Sbjct: 679 DFTNTVIVMTSNLGSEAITRRGATTGFAAGGADADEEARREQILRPLREHFRPEFLNRID 738

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
             V  + L   + R I     + L+ + + L++ +GI + FT+ +++ LAD         
Sbjct: 739 EIVVFRQLTTDELRQIT----NLLLDRTRSLVQAKGITVTFTDQAVEWLADHGYQ----- 789

Query: 382 GDIGARRLQTVM----ERVLEDISFSASDLQEKTVVIDAE 417
            + GAR L+  +    E  L  +       +   V +D E
Sbjct: 790 PEYGARPLRRTIQREVENELSRLLLDGRVEEGGRVTVDVE 829


>gi|256783178|ref|ZP_05521609.1| chaperone [Streptomyces lividans TK24]
          Length = 835

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+   I+GQ +A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 528 LEEEMHARIVGQDEAVTAVSRAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELAK 582

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA L        I+ ++++F E   V R V
Sbjct: 583 TLAELLFGEENRMIRFDMSEFQEKHTVARLV 613


>gi|254493514|ref|ZP_05106685.1| ClpB protein [Neisseria gonorrhoeae 1291]
 gi|226512554|gb|EEH61899.1| ClpB protein [Neisseria gonorrhoeae 1291]
          Length = 859

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L R ++GQ +A RAV+ A+R      +  + L D   P  + L +GPTGVGKT +
Sbjct: 565 KMEEVLHRRVVGQNEAVRAVSDAIR------RSRSGLADPNKPYGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+++++++ E   V R
Sbjct: 619 CKALAGFLFDSEDHLIRIDMSEYMEKHAVAR 649


>gi|241954902|ref|XP_002420172.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Candida dubliniensis CD36]
 gi|223643513|emb|CAX42394.1| subunit of the mitochondrial inner membrane i-AAA protease complex,
           putative [Candida dubliniensis CD36]
          Length = 687

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I        D
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRIRELFSQARD 315

Query: 109 VAINIVRESRRDEV------REQA-SINAEERILDALVGKTATS--------NTREVFRK 153
            A  I+     D +      ++QA +     ++L  L G + T         N  E   K
Sbjct: 316 KAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTEGIIIIGATNFPESLDK 375

Query: 154 KLRDGEISDKEIDIEVA 170
            L      DKE+ +++ 
Sbjct: 376 ALTRPGRFDKEVIVDLP 392


>gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411]
 gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411]
          Length = 796

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGVGKTAISRRL 73
             + G  +A   +         R  L    R E     +P+ +LL GP G GKT ++R +
Sbjct: 168 DDVAGADEAVEELDEI------RDFLTDPSRYEALGAKIPRGVLLYGPPGTGKTLLARAV 221

Query: 74  ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 222 AGEAGVPFFTISGSDFVEM-FVGVGASRV-RDLFKQA 256


>gi|330901395|gb|EGH32814.1| AAA ATPase, central region [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|319745774|gb|EFV98069.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           agalactiae ATCC 13813]
          Length = 815

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ DA  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 509 LEKELHKRVIGQDDAVTAISRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 563

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            LA +     +  I+ +++++ E            GYVG +
Sbjct: 564 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYD 604


>gi|269792687|ref|YP_003317591.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100322|gb|ACZ19309.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 871

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V+ A+       +  A ++D   P  + L +GPTGVGKT ++
Sbjct: 570 LEEILHKRVVGQDEAVRLVSEAV------LRARAGIKDPRRPIGSFLFLGPTGVGKTELA 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 624 KALAEALFDSEDNMIRIDMSEYMEKHSVSR 653


>gi|240280590|gb|EER44094.1| vacuolar sorting protein [Ajellomyces capsulatus H143]
          Length = 806

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 518 DDVAGLEVAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARSVATES 575

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 576 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 609


>gi|229829756|ref|ZP_04455825.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
 gi|229791745|gb|EEP27859.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM
           14600]
          Length = 633

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G Q+ K ++      L +  +  Q+ A +     PK ++LVGP G GKT +++ +A
Sbjct: 176 EDVAGLQEEKESLGELVDFLSDPGKFTQVGARI-----PKGVILVGPPGTGKTLLAKAVA 230

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
             AG PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 231 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFAEAKKN 267


>gi|239826400|ref|YP_002949024.1| ATPase AAA [Geobacillus sp. WCH70]
 gi|239806693|gb|ACS23758.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
          Length = 725

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 25/241 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L + +IGQ++A + VA A+     R+             + L VGPTGVGKT +
Sbjct: 424 KHLEENLAKKVIGQEEAVKKVAKAI-----RRSRAGLKAKHRPIGSFLFVGPTGVGKTEL 478

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           ++ LA          I+++++++ E   V + +      +     +       ++VR   
Sbjct: 479 AKTLAEELFGSKDAMIRLDMSEYMEKHSVSKLIGSPPGYV----GHEEAGQLTEKVRRNP 534

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE-------IDIEVADTSSDISNF 179
                  +LD +  + A  + + +F + L DG ++D +         + +A +++ +++ 
Sbjct: 535 YSII---LLDEI--EKAHPDVQHIFLQILEDGRLTDSQGRTVSFKDTVIIATSNAGVTDK 589

Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID-MDTVHRDSI 238
            I  G        S L S       +   R      +  L ++   +++D M    + ++
Sbjct: 590 KITVGFEKQQTQTSILDSLNAYFKPEFLNRFDAIIEFKSLKKEHMLQIVDLMLDEVKAAM 649

Query: 239 Q 239
           +
Sbjct: 650 R 650



 Score = 41.5 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 116/344 (33%), Gaps = 55/344 (15%)

Query: 98  NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157
           ++++II +   + +  ++   +++++      A++ I              +   K +R 
Sbjct: 399 DIQRIIEEKTGIPVGKLQADEKEKMKHLEENLAKKVI--------GQEEAVKKVAKAIRR 450

Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217
                      +      I +F   G   VG   L++  ++ +   +   IR+ + +   
Sbjct: 451 SRAG-------LKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGSKDAMIRLDMSE--- 500

Query: 218 ELMRDESDRLI--------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDS 260
            + +    +LI          +            Y I+ LDE +K         +   + 
Sbjct: 501 YMEKHSVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILED 560

Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320
           G         V      ++  S+       I           +   S  A   PE   RF
Sbjct: 561 GRLTDSQGRTVSFKDTVIIATSNAGVTDKKITVGFEKQQTQTSILDSLNAYFKPEFLNRF 620

Query: 321 PVRVHLKSLNKSDFRLIL----TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376
              +  KSL K     I+     + ++ +  Q+        I LD ++ + + LA++  +
Sbjct: 621 DAIIEFKSLKKEHMLQIVDLMLDEVKAAMREQH--------IDLDVSQAAKEKLAELGYH 672

Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSA---SDLQEKTVVIDAE 417
                   GAR L+ V++  +ED         + Q K + ID E
Sbjct: 673 -----PAFGARPLRRVIQEHVEDKIADVLLDENDQVKAIRIDVE 711


>gi|156841249|ref|XP_001643999.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114631|gb|EDO16141.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 881

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 585 EIVVHGDEVRWDDIAGLESAKASLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 642

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   ++G + E+++R L  VA
Sbjct: 643 TMLARAVATESHSTFFSISASSLT-SKFLGES-EKLVRALFAVA 684


>gi|25029169|ref|NP_739223.1| putative endopeptidase Clp ATP-binding chain B [Corynebacterium
           efficiens YS-314]
 gi|54035859|sp|Q8FM94|CLPB_COREF RecName: Full=Chaperone protein ClpB
 gi|23494457|dbj|BAC19423.1| putative endopeptidase Clp ATP-binding chain B [Corynebacterium
           efficiens YS-314]
          Length = 852

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 565 MERFLGKRVVGQHEAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 619

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            ++          +++++++++E            GYVG +    + + V          
Sbjct: 620 AVSEFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTT--V 677

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 678 LFDEV-EKAHPDVFDILLQVL 697


>gi|15607525|ref|NP_214898.1| endopeptidase ATP binding protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15839768|ref|NP_334805.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Mycobacterium
           tuberculosis CDC1551]
 gi|31791561|ref|NP_854054.1| endopeptidase ATP-binding protein ClpB [Mycobacterium bovis
           AF2122/97]
 gi|121636297|ref|YP_976520.1| putative endopeptidase ATP binding protein (chain b) clpB
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660150|ref|YP_001281673.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Mycobacterium
           tuberculosis H37Ra]
 gi|148821580|ref|YP_001286334.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis F11]
 gi|215402134|ref|ZP_03414315.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis 02_1987]
 gi|215409893|ref|ZP_03418701.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425601|ref|ZP_03423520.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis T92]
 gi|215429204|ref|ZP_03427123.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis EAS054]
 gi|215444469|ref|ZP_03431221.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis T85]
 gi|218752011|ref|ZP_03530807.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis GM 1503]
 gi|224988769|ref|YP_002643456.1| putative endopeptidase ATP binding protein chain b [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797307|ref|YP_003030308.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 1435]
 gi|254549327|ref|ZP_05139774.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185251|ref|ZP_05762725.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199381|ref|ZP_05766872.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis T46]
 gi|260203533|ref|ZP_05771024.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis K85]
 gi|289441763|ref|ZP_06431507.1| ATP-dependent chaperone ClpB [Mycobacterium tuberculosis T46]
 gi|289445922|ref|ZP_06435666.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552633|ref|ZP_06441843.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 605]
 gi|289572969|ref|ZP_06453196.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis K85]
 gi|289744081|ref|ZP_06503459.1| ATP-dependent chaperone clpB [Mycobacterium tuberculosis 02_1987]
 gi|289748868|ref|ZP_06508246.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis T92]
 gi|289752413|ref|ZP_06511791.1| clpB [Mycobacterium tuberculosis EAS054]
 gi|289756452|ref|ZP_06515830.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760496|ref|ZP_06519874.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium
           tuberculosis GM 1503]
 gi|297632866|ref|ZP_06950646.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729841|ref|ZP_06958959.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN R506]
 gi|298523859|ref|ZP_07011268.1| clpB [Mycobacterium tuberculosis 94_M4241A]
 gi|306774478|ref|ZP_07412815.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu001]
 gi|306779225|ref|ZP_07417562.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu002]
 gi|306787381|ref|ZP_07425703.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu004]
 gi|306791932|ref|ZP_07430234.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu005]
 gi|306801978|ref|ZP_07438646.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu008]
 gi|306966386|ref|ZP_07479047.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu009]
 gi|306970582|ref|ZP_07483243.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu010]
 gi|307078309|ref|ZP_07487479.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu011]
 gi|307082868|ref|ZP_07491981.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu012]
 gi|313657170|ref|ZP_07814050.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN V2475]
 gi|54036851|sp|P63287|CLPB_MYCBO RecName: Full=Chaperone protein ClpB
 gi|54036852|sp|P63288|CLPB_MYCTU RecName: Full=Chaperone protein ClpB
 gi|2909505|emb|CAA17390.1| PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB
           PROTEIN) (HEAT SHOCK PROTEIN F84.1) [Mycobacterium
           tuberculosis H37Rv]
 gi|13879896|gb|AAK44619.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Mycobacterium
           tuberculosis CDC1551]
 gi|31617147|emb|CAD93254.1| PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB
           PROTEIN) (HEAT SHOCK PROTEIN F84.1) [Mycobacterium bovis
           AF2122/97]
 gi|121491944|emb|CAL70407.1| Probable endopeptidase ATP binding protein (chain b) clpB
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148504302|gb|ABQ72111.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Mycobacterium
           tuberculosis H37Ra]
 gi|148720107|gb|ABR04732.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium
           tuberculosis F11]
 gi|224771882|dbj|BAH24688.1| putative endopeptidase ATP binding protein chain b [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253318810|gb|ACT23413.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414682|gb|EFD11922.1| ATP-dependent chaperone ClpB [Mycobacterium tuberculosis T46]
 gi|289418880|gb|EFD16081.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437265|gb|EFD19758.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 605]
 gi|289537400|gb|EFD41978.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis K85]
 gi|289684609|gb|EFD52097.1| ATP-dependent chaperone clpB [Mycobacterium tuberculosis 02_1987]
 gi|289689455|gb|EFD56884.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis T92]
 gi|289693000|gb|EFD60429.1| clpB [Mycobacterium tuberculosis EAS054]
 gi|289708002|gb|EFD72018.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium
           tuberculosis GM 1503]
 gi|289712016|gb|EFD76028.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298493653|gb|EFI28947.1| clpB [Mycobacterium tuberculosis 94_M4241A]
 gi|308216983|gb|EFO76382.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu001]
 gi|308327825|gb|EFP16676.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu002]
 gi|308335937|gb|EFP24788.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu004]
 gi|308339589|gb|EFP28440.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu005]
 gi|308351279|gb|EFP40130.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu008]
 gi|308355932|gb|EFP44783.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu009]
 gi|308359889|gb|EFP48740.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu010]
 gi|308363790|gb|EFP52641.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu011]
 gi|308367411|gb|EFP56262.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu012]
 gi|326902210|gb|EGE49143.1| endopeptidase subunit ATP binding protein B ClpB [Mycobacterium
           tuberculosis W-148]
 gi|328457094|gb|AEB02517.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis KZN 4207]
          Length = 848

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A  AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 564 MEDELGKRVIGQKAAVTAVSDAVR------RSRAGVSDPNRPTGAFMFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 618 KALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRR 671


>gi|332088101|gb|EGI93226.1| ATP-dependent chaperone ClpB [Shigella boydii 5216-82]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|330686262|gb|EGG97874.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           epidermidis VCU121]
          Length = 817

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHDRVIGQKDAVTSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L+K + + I+T   + L L+    +  + I +  TE + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLSKEELKEIVTMMVNKLTLR----LSEQNINIKVTEKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + L+ K V +D +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNQLEGKEVTVDHD 797


>gi|295401948|ref|ZP_06811911.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109233|ref|YP_003987549.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
 gi|294976078|gb|EFG51693.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214334|gb|ADP72938.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 812

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AVA A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 503 KLEEILHSRVVGQDEAVKAVAKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 556

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 557 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVG 597


>gi|253998254|ref|YP_003050317.1| ATP-dependent chaperone ClpB [Methylovorus sp. SIP3-4]
 gi|253984933|gb|ACT49790.1| ATP-dependent chaperone ClpB [Methylovorus sp. SIP3-4]
          Length = 861

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A R VA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEDKLHERVVGQDEAVRLVADAIR------RSRSGLSDPNRPYGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 620 KALANFLFDSEEHLVRIDMSEFMEKHSVSR 649


>gi|242239693|ref|YP_002987874.1| ATP-dependent Clp protease ATP-binding subunit clpA [Dickeya
           dadantii Ech703]
 gi|242131750|gb|ACS86052.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya
           dadantii Ech703]
          Length = 759

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + +   L   + GQ  A  A+  A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 450 KNLNDRLKMLVFGQDTAIEALTEAIK------MSRAGLGSERKPVGSFLFAGPTGVGKTE 503

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 504 VTLQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 559


>gi|218559513|ref|YP_002392426.1| protein disaggregation chaperone [Escherichia coli S88]
 gi|218366282|emb|CAR04034.1| protein disaggregation chaperone [Escherichia coli S88]
 gi|294493689|gb|ADE92445.1| ATP-dependent chaperone protein ClpB [Escherichia coli IHE3034]
 gi|307625856|gb|ADN70160.1| protein disaggregation chaperone [Escherichia coli UM146]
 gi|323951207|gb|EGB47083.1| ATP-dependent chaperone ClpB [Escherichia coli H252]
 gi|323957039|gb|EGB52765.1| ATP-dependent chaperone ClpB [Escherichia coli H263]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|218244917|ref|YP_002370288.1| ATPase AAA-2 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218165395|gb|ACK64132.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8801]
          Length = 789

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + ++L   IIGQ++A +AV+ A+     R+             + +  GPTGVGKT +++
Sbjct: 471 LEAQLHESIIGQEEAVKAVSRAV-----RRARVGLKNPHRPVASFIFAGPTGVGKTELTK 525

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LAR         I++++++F E   V + +  
Sbjct: 526 ALARYLFGSEEAMIRLDMSEFMEPHTVSKLIGS 558


>gi|148998004|ref|ZP_01825517.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147756014|gb|EDK63057.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP11-BS70]
          Length = 726

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|145220383|ref|YP_001131092.1| ATPase [Prosthecochloris vibrioformis DSM 265]
 gi|145206547|gb|ABP37590.1| ATPase AAA-2 domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 851

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 43/281 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L + +IGQ +A + +  A+      Q+  A L+D   P  + + +GPTGVGKT ++
Sbjct: 524 MEADLQKEVIGQDEAIKKITKAI------QRTRAGLKDPSRPIGSFIFLGPTGVGKTELA 577

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 578 KALTRYIFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 637

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + D
Sbjct: 638 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------LGRKVDFRNTIIIMTSNIGAKD 686

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235
           I +F    G      + S        +G  K ++ +++     +   E    ID DT+  
Sbjct: 687 IKSFGAGSGMGFTSPDDS--------TGSYKAMKSTIEDALKRVFNPEFLNRID-DTIVF 737

Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             ++  + + I+ +    K+  R    GI V+ E   +  L
Sbjct: 738 HQLEKEDIFKIIDI-TAGKLFKRLHDMGIEVTLEEPAKQFL 777


>gi|82778016|ref|YP_404365.1| protein disaggregation chaperone [Shigella dysenteriae Sd197]
 gi|309789454|ref|ZP_07684040.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 1617]
 gi|81242164|gb|ABB62874.1| heat shock protein [Shigella dysenteriae Sd197]
 gi|308922697|gb|EFP68218.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 1617]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|32266321|ref|NP_860353.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
 gi|32262371|gb|AAP77419.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC
           51449]
          Length = 611

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 11/197 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G  +AK  V   + +  +  +  A +  ++ P+ +LLVGP G GKT +++ +A  A
Sbjct: 150 DDMAGNAEAKEEVVEIV-DFLKYPERYAAVGAKI-PRGVLLVGPPGTGKTLLAKAVAGEA 207

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEERILD 136
             PF  +  + F E+ +VG    ++ RDL ++A          DE+       A      
Sbjct: 208 NVPFFSMSGSSFIEM-FVGLGASRV-RDLFEMAKKDAPSIIFIDEIDAIGKSRA------ 259

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
           A           +   + L + +    E    +   +++      P     G  +   L 
Sbjct: 260 AGSMVGGNDEREQTLNQLLAEMDGFGSESAPVIVLAATNRPEILDPALLRPGRFDRQVLV 319

Query: 197 SKVMGSGRKKKIRMSVQ 213
            K    GR + +++ ++
Sbjct: 320 DKPDFEGRLEILKVHIK 336


>gi|54035818|sp|Q7X2S8|CLPB_MEIRU RecName: Full=Chaperone protein ClpB
 gi|31872394|gb|AAP59445.1| ClpB-like protein [Meiothermus ruber]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 552 LEDELHKRVVGQDEAIVAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELA 605

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 606 KTLAASLFDTEENMVRIDMSEYQEKHTVAR 635


>gi|26987361|ref|NP_742786.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
 gi|54035836|sp|Q88Q71|CLPB_PSEPK RecName: Full=Chaperone protein ClpB
 gi|24982014|gb|AAN66250.1|AE016253_5 ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEELLHQRVIGQSEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|15832709|ref|NP_311482.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130513|ref|NP_417083.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313151|ref|YP_311570.1| protein disaggregation chaperone [Shigella sonnei Ss046]
 gi|82545045|ref|YP_408992.1| protein disaggregation chaperone [Shigella boydii Sb227]
 gi|89109394|ref|AP_003174.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. W3110]
 gi|110642755|ref|YP_670485.1| protein disaggregation chaperone [Escherichia coli 536]
 gi|157158232|ref|YP_001463913.1| protein disaggregation chaperone [Escherichia coli E24377A]
 gi|157162068|ref|YP_001459386.1| protein disaggregation chaperone [Escherichia coli HS]
 gi|168752067|ref|ZP_02777089.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4113]
 gi|168758662|ref|ZP_02783669.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4401]
 gi|168762385|ref|ZP_02787392.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4501]
 gi|168771698|ref|ZP_02796705.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4486]
 gi|168773480|ref|ZP_02798487.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4196]
 gi|168778570|ref|ZP_02803577.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4076]
 gi|168789495|ref|ZP_02814502.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC869]
 gi|168801710|ref|ZP_02826717.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC508]
 gi|170019129|ref|YP_001724083.1| protein disaggregation chaperone [Escherichia coli ATCC 8739]
 gi|170082197|ref|YP_001731517.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683980|ref|YP_001744777.1| protein disaggregation chaperone [Escherichia coli SMS-3-5]
 gi|188492624|ref|ZP_02999894.1| ATP-dependent chaperone protein ClpB [Escherichia coli 53638]
 gi|191169051|ref|ZP_03030814.1| ATP-dependent chaperone protein ClpB [Escherichia coli B7A]
 gi|191174569|ref|ZP_03036064.1| ATP-dependent chaperone protein ClpB [Escherichia coli F11]
 gi|193064051|ref|ZP_03045136.1| ATP-dependent chaperone protein ClpB [Escherichia coli E22]
 gi|194430164|ref|ZP_03062665.1| ATP-dependent chaperone protein ClpB [Escherichia coli B171]
 gi|194439334|ref|ZP_03071412.1| ATP-dependent chaperone protein ClpB [Escherichia coli 101-1]
 gi|195940187|ref|ZP_03085569.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805997|ref|ZP_03248334.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4206]
 gi|208813052|ref|ZP_03254381.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4045]
 gi|208819305|ref|ZP_03259625.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4042]
 gi|209397795|ref|YP_002272065.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4115]
 gi|209920069|ref|YP_002294153.1| protein disaggregation chaperone [Escherichia coli SE11]
 gi|215487931|ref|YP_002330362.1| protein disaggregation chaperone [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326744|ref|ZP_03442827.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555172|ref|YP_002388085.1| protein disaggregation chaperone [Escherichia coli IAI1]
 gi|218690711|ref|YP_002398923.1| protein disaggregation chaperone [Escherichia coli ED1a]
 gi|218696217|ref|YP_002403884.1| protein disaggregation chaperone [Escherichia coli 55989]
 gi|218701104|ref|YP_002408733.1| protein disaggregation chaperone [Escherichia coli IAI39]
 gi|218706094|ref|YP_002413613.1| protein disaggregation chaperone [Escherichia coli UMN026]
 gi|238901753|ref|YP_002927549.1| protein disaggregation chaperone [Escherichia coli BW2952]
 gi|253772512|ref|YP_003035343.1| protein disaggregation chaperone [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162563|ref|YP_003045671.1| protein disaggregation chaperone [Escherichia coli B str. REL606]
 gi|254794540|ref|YP_003079377.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019587|ref|ZP_05433452.1| protein disaggregation chaperone [Shigella sp. D9]
 gi|256024879|ref|ZP_05438744.1| protein disaggregation chaperone [Escherichia sp. 4_1_40B]
 gi|260845274|ref|YP_003223052.1| protein disaggregation chaperone ClpB [Escherichia coli O103:H2
           str. 12009]
 gi|260856682|ref|YP_003230573.1| protein disaggregation chaperone ClpB [Escherichia coli O26:H11
           str. 11368]
 gi|260869274|ref|YP_003235676.1| protein disaggregation chaperone ClpB [Escherichia coli O111:H-
           str. 11128]
 gi|261227477|ref|ZP_05941758.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255671|ref|ZP_05948204.1| protein disaggregation chaperone ClpB [Escherichia coli O157:H7
           str. FRIK966]
 gi|297516260|ref|ZP_06934646.1| protein disaggregation chaperone [Escherichia coli OP50]
 gi|301024190|ref|ZP_07187897.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 196-1]
 gi|306812488|ref|ZP_07446686.1| protein disaggregation chaperone [Escherichia coli NC101]
 gi|307139313|ref|ZP_07498669.1| protein disaggregation chaperone [Escherichia coli H736]
 gi|307315094|ref|ZP_07594678.1| ATP-dependent chaperone ClpB [Escherichia coli W]
 gi|312965507|ref|ZP_07779739.1| ATP-dependent chaperone ClpB [Escherichia coli 2362-75]
 gi|331664159|ref|ZP_08365068.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA143]
 gi|331669344|ref|ZP_08370190.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA271]
 gi|331674036|ref|ZP_08374798.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA280]
 gi|54036848|sp|P63284|CLPB_ECOLI RecName: Full=Chaperone protein ClpB; AltName: Full=Heat shock
           protein F84.1
 gi|54036849|sp|P63285|CLPB_ECO57 RecName: Full=Chaperone protein ClpB
 gi|54036850|sp|P63286|CLPB_ECOL6 RecName: Full=Chaperone protein ClpB
 gi|1788943|gb|AAC75641.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799995|dbj|BAA16476.1| protein disaggregation chaperone [Escherichia coli str. K12 substr.
           W3110]
 gi|13362926|dbj|BAB36878.1| heat shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856628|gb|AAZ89335.1| heat shock protein [Shigella sonnei Ss046]
 gi|81246456|gb|ABB67164.1| heat shock protein [Shigella boydii Sb227]
 gi|110344347|gb|ABG70584.1| ClpB protein [Escherichia coli 536]
 gi|157067748|gb|ABV07003.1| ATP-dependent chaperone protein ClpB [Escherichia coli HS]
 gi|157080262|gb|ABV19970.1| ATP-dependent chaperone protein ClpB [Escherichia coli E24377A]
 gi|169754057|gb|ACA76756.1| ATP-dependent chaperone ClpB [Escherichia coli ATCC 8739]
 gi|169890032|gb|ACB03739.1| protein disaggregation chaperone [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521698|gb|ACB19876.1| ATP-dependent chaperone protein ClpB [Escherichia coli SMS-3-5]
 gi|187770676|gb|EDU34520.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4196]
 gi|188014008|gb|EDU52130.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4113]
 gi|188487823|gb|EDU62926.1| ATP-dependent chaperone protein ClpB [Escherichia coli 53638]
 gi|189003333|gb|EDU72319.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4076]
 gi|189354548|gb|EDU72967.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4401]
 gi|189359601|gb|EDU78020.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4486]
 gi|189367288|gb|EDU85704.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4501]
 gi|189370894|gb|EDU89310.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC869]
 gi|189376181|gb|EDU94597.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC508]
 gi|190900892|gb|EDV60678.1| ATP-dependent chaperone protein ClpB [Escherichia coli B7A]
 gi|190905142|gb|EDV64786.1| ATP-dependent chaperone protein ClpB [Escherichia coli F11]
 gi|192929286|gb|EDV82895.1| ATP-dependent chaperone protein ClpB [Escherichia coli E22]
 gi|194411789|gb|EDX28110.1| ATP-dependent chaperone protein ClpB [Escherichia coli B171]
 gi|194421696|gb|EDX37705.1| ATP-dependent chaperone protein ClpB [Escherichia coli 101-1]
 gi|208725798|gb|EDZ75399.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4206]
 gi|208734329|gb|EDZ83016.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4045]
 gi|208739428|gb|EDZ87110.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4042]
 gi|209159195|gb|ACI36628.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4115]
 gi|209913328|dbj|BAG78402.1| ATP-dependent protease [Escherichia coli SE11]
 gi|215266003|emb|CAS10414.1| protein disaggregation chaperone [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319111|gb|EEC27536.1| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352949|emb|CAU98748.1| protein disaggregation chaperone [Escherichia coli 55989]
 gi|218361940|emb|CAQ99542.1| protein disaggregation chaperone [Escherichia coli IAI1]
 gi|218371090|emb|CAR18919.1| protein disaggregation chaperone [Escherichia coli IAI39]
 gi|218428275|emb|CAR09200.2| protein disaggregation chaperone [Escherichia coli ED1a]
 gi|218433191|emb|CAR14090.1| protein disaggregation chaperone [Escherichia coli UMN026]
 gi|238863301|gb|ACR65299.1| protein disaggregation chaperone [Escherichia coli BW2952]
 gi|242378188|emb|CAQ32963.1| ClpB chaperone [Escherichia coli BL21(DE3)]
 gi|253323556|gb|ACT28158.1| ATP-dependent chaperone ClpB [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974464|gb|ACT40135.1| protein disaggregation chaperone [Escherichia coli B str. REL606]
 gi|253978631|gb|ACT44301.1| protein disaggregation chaperone [Escherichia coli BL21(DE3)]
 gi|254593940|gb|ACT73301.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755331|dbj|BAI26833.1| protein disaggregation chaperone ClpB [Escherichia coli O26:H11
           str. 11368]
 gi|257760421|dbj|BAI31918.1| protein disaggregation chaperone ClpB [Escherichia coli O103:H2
           str. 12009]
 gi|257765630|dbj|BAI37125.1| protein disaggregation chaperone ClpB [Escherichia coli O111:H-
           str. 11128]
 gi|260448332|gb|ACX38754.1| ATP-dependent chaperone ClpB [Escherichia coli DH1]
 gi|281179640|dbj|BAI55970.1| ATP-dependent protease [Escherichia coli SE15]
 gi|284922540|emb|CBG35627.1| chaperone (heat-shock protein F84.1) [Escherichia coli 042]
 gi|299880532|gb|EFI88743.1| ATP-dependent chaperone protein ClpB [Escherichia coli MS 196-1]
 gi|305854526|gb|EFM54964.1| protein disaggregation chaperone [Escherichia coli NC101]
 gi|306905523|gb|EFN36057.1| ATP-dependent chaperone ClpB [Escherichia coli W]
 gi|307554607|gb|ADN47382.1| ATP-dependent chaperone protein ClpB [Escherichia coli ABU 83972]
 gi|309702974|emb|CBJ02305.1| chaperone (heat-shock protein F84.1) [Escherichia coli ETEC H10407]
 gi|312289927|gb|EFR17815.1| ATP-dependent chaperone ClpB [Escherichia coli 2362-75]
 gi|315061907|gb|ADT76234.1| protein disaggregation chaperone [Escherichia coli W]
 gi|315137212|dbj|BAJ44371.1| heat shock protein [Escherichia coli DH1]
 gi|315615333|gb|EFU95967.1| ATP-dependent chaperone ClpB [Escherichia coli 3431]
 gi|320177085|gb|EFW52102.1| ClpB protein [Shigella dysenteriae CDC 74-1112]
 gi|320182491|gb|EFW57385.1| ClpB protein [Shigella boydii ATCC 9905]
 gi|320185012|gb|EFW59794.1| ClpB protein [Shigella flexneri CDC 796-83]
 gi|320188931|gb|EFW63590.1| ClpB protein [Escherichia coli O157:H7 str. EC1212]
 gi|320194759|gb|EFW69388.1| ClpB protein [Escherichia coli WV_060327]
 gi|320198369|gb|EFW72971.1| ClpB protein [Escherichia coli EC4100B]
 gi|320640776|gb|EFX10274.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           G5101]
 gi|320646121|gb|EFX15066.1| protein disaggregation chaperone [Escherichia coli O157:H- str.
           493-89]
 gi|320651418|gb|EFX19819.1| protein disaggregation chaperone [Escherichia coli O157:H- str. H
           2687]
 gi|320657023|gb|EFX24846.1| protein disaggregation chaperone [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662687|gb|EFX30031.1| protein disaggregation chaperone [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667504|gb|EFX34428.1| protein disaggregation chaperone [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156248|gb|EFZ42407.1| ATP-dependent chaperone ClpB [Escherichia coli EPECa14]
 gi|323177280|gb|EFZ62868.1| ATP-dependent chaperone ClpB [Escherichia coli 1180]
 gi|323184531|gb|EFZ69905.1| ATP-dependent chaperone ClpB [Escherichia coli 1357]
 gi|323377512|gb|ADX49780.1| ATP-dependent chaperone ClpB [Escherichia coli KO11]
 gi|323935612|gb|EGB31932.1| ATP-dependent chaperone ClpB [Escherichia coli E1520]
 gi|323941388|gb|EGB37572.1| ATP-dependent chaperone ClpB [Escherichia coli E482]
 gi|323946279|gb|EGB42312.1| ATP-dependent chaperone ClpB [Escherichia coli H120]
 gi|323960548|gb|EGB56177.1| ATP-dependent chaperone ClpB [Escherichia coli H489]
 gi|323963902|gb|EGB59395.1| ATP-dependent chaperone ClpB [Escherichia coli M863]
 gi|324120051|gb|EGC13927.1| ATP-dependent chaperone ClpB [Escherichia coli E1167]
 gi|325496334|gb|EGC94193.1| protein disaggregation chaperone [Escherichia fergusonii ECD227]
 gi|326344348|gb|EGD68106.1| ClpB protein [Escherichia coli O157:H7 str. 1125]
 gi|326347717|gb|EGD71434.1| ClpB protein [Escherichia coli O157:H7 str. 1044]
 gi|327252298|gb|EGE63970.1| ATP-dependent chaperone ClpB [Escherichia coli STEC_7v]
 gi|330912357|gb|EGH40867.1| ClpB protein [Escherichia coli AA86]
 gi|331058616|gb|EGI30594.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA143]
 gi|331063012|gb|EGI34925.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA271]
 gi|331068775|gb|EGI40168.1| ATP-dependent chaperone protein ClpB [Escherichia coli TA280]
 gi|332344463|gb|AEE57797.1| ATP-dependent chaperone ClpB [Escherichia coli UMNK88]
 gi|333001158|gb|EGK20728.1| ATP-dependent chaperone ClpB [Shigella flexneri K-272]
 gi|333015796|gb|EGK35133.1| ATP-dependent chaperone ClpB [Shigella flexneri K-227]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|332999364|gb|EGK18949.1| ATP-dependent chaperone ClpB [Shigella flexneri VA-6]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|260433267|ref|ZP_05787238.1| negative regulator of genetic competence ClpC/mecB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417095|gb|EEX10354.1| negative regulator of genetic competence ClpC/mecB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 940

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   +IGQ++A  AVA A+     R                L +GPTGVGKT ++
Sbjct: 604 KLEERLHERVIGQEEAIAAVADAV-----RLARAGLREGSGPTATFLFLGPTGVGKTELA 658

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA +        ++++++++ E   V R V
Sbjct: 659 KTLAEVIFGDEDALLRIDMSEYGERHAVARLV 690


>gi|218547885|ref|YP_002381676.1| protein disaggregation chaperone [Escherichia fergusonii ATCC
           35469]
 gi|218355426|emb|CAQ88034.1| protein disaggregation chaperone [Escherichia fergusonii ATCC
           35469]
 gi|324111233|gb|EGC05215.1| ATP-dependent chaperone ClpB [Escherichia fergusonii B253]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 647


>gi|220908358|ref|YP_002483669.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
 gi|219864969|gb|ACL45308.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425]
          Length = 872

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LEDELHRRVIGQEEAVTAVADAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 622 KALAAYLFDTEEAMVRIDMSEYMEKHSVSRLV 653


>gi|221134866|ref|ZP_03561169.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Glaciecola
           sp. HTCC2999]
          Length = 759

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   +  A+              ++    + L  GPTGVGKT +
Sbjct: 451 KNLGRNLKIVVFGQDKAIETLTDAIH-----LSRSGLGTEQKPIGSFLFAGPTGVGKTEV 505

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA++ G   ++ +++++ E            GYVG +   ++ D V      
Sbjct: 506 TAQLAKIMGVELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTDAVIKNPYS 560


>gi|21225789|ref|NP_631568.1| chaperone [Streptomyces coelicolor A3(2)]
 gi|14495033|emb|CAC42150.1| putative chaperone [Streptomyces coelicolor A3(2)]
          Length = 837

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+   I+GQ +A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 530 LEEEMHARIVGQDEAVTAVSRAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELAK 584

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA L        I+ ++++F E   V R V
Sbjct: 585 TLAELLFGEENRMIRFDMSEFQEKHTVARLV 615



 Score = 36.8 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371
            LPE   R    +    L + D   I+     +L+ Q +  +  +G+ L  TE      A
Sbjct: 715 FLPEFLNRIDEIIVFHGLTEDDLSRIV----DHLLAQSERRVHAQGMTLKVTEA-----A 765

Query: 372 DVAVNLNSTVGDIGARRLQ----TVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423
              +  +    + GAR L+      ++  + D+          T+V  A+ V   +
Sbjct: 766 KKLLIAHGHQPEFGARPLRRTIQAELDNRVADLLLGGEADPGDTIV--ADVVDDSL 819


>gi|330891572|gb|EGH24233.1| clpB protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 422

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 134 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 187

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 188 EFLFDTEEAMVRIDMSEFMEKHSVAR 213


>gi|313497000|gb|ADR58366.1| ClpB [Pseudomonas putida BIRD-1]
          Length = 831

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 538 KMEELLHQRVIGQSEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 591

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 592 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 622


>gi|306430727|emb|CBJ17110.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430729|emb|CBJ17111.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430731|emb|CBJ17112.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430735|emb|CBJ17114.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430737|emb|CBJ17115.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
 gi|306430739|emb|CBJ17116.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|291224570|ref|XP_002732276.1| PREDICTED: spastin-like [Saccoglossus kowalevskii]
          Length = 574

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  + 
Sbjct: 300 DIAGQDIAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTLLAKAVAHESN 357

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   YVG   E+++R +  VA
Sbjct: 358 ATFFNISASTLT-SKYVGEG-EKLVRAMFAVA 387


>gi|195144956|ref|XP_002013462.1| GL23394 [Drosophila persimilis]
 gi|229559928|sp|B4G437|SPAST_DROPE RecName: Full=Spastin
 gi|194102405|gb|EDW24448.1| GL23394 [Drosophila persimilis]
          Length = 788

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 514 DIAGQEVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 571

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 572 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHLQ 605


>gi|157962981|ref|YP_001503015.1| ATPase [Shewanella pealeana ATCC 700345]
 gi|157847981|gb|ABV88480.1| ATPase AAA-2 domain protein [Shewanella pealeana ATCC 700345]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  +V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 KMEDALHERVIGQNEAVDSVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA+      +  ++V++++F E   V R V
Sbjct: 615 CKSLAKFLFDTESALVRVDMSEFMEKHSVSRLV 647


>gi|50915108|ref|YP_061080.1| ClpC [Streptococcus pyogenes MGAS10394]
 gi|50904182|gb|AAT87897.1| ClpC [Streptococcus pyogenes MGAS10394]
          Length = 814

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ  A  A++ A+R      +  + +R    P  + + +GPTGVGKT ++
Sbjct: 510 LEKELHKRVIGQDAAVTAISRAIR------RNQSGIRTGKCPIGSFMFLGPTGVGKTELA 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA +     A  I+ +++++ E            GYVG +
Sbjct: 564 KALAEVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYD 605


>gi|148545915|ref|YP_001266017.1| ATPase [Pseudomonas putida F1]
 gi|148509973|gb|ABQ76833.1| ATPase AAA-2 domain protein [Pseudomonas putida F1]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEELLHQRVIGQSEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|306796119|ref|ZP_07434421.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu006]
 gi|308343443|gb|EFP32294.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium
           tuberculosis SUMu006]
          Length = 848

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A  AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 564 MEDELGKRVIGQKAAVTAVSDAVR------RSRAGVSDPNRPTGAFMFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 618 KALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRR 671


>gi|299541899|ref|ZP_07052222.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           fusiformis ZC1]
 gi|298725637|gb|EFI66278.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
           fusiformis ZC1]
          Length = 814

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 21/224 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 502 QLEEELHKRVVGQGEAVEAISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R LA +        I+V+++++ E     R V      +             ++VR + 
Sbjct: 556 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYV----GFDDGGQLTEKVRRKP 611

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
                  +LD +  + A  +   +  + L DG ++D +    V D  + +       GA 
Sbjct: 612 YSVV---LLDEI--EKAHPDVFNILLQVLEDGRLTDSK--GRVVDFRNTVVIMTSNVGAD 664

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                 +  F+      + K ++ ++ +   +  R E    ID 
Sbjct: 665 ALKYQKNLGFNVGGAESKHKDMKGTMLEELKKAFRPEFLNRIDE 708



 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +   +L K   + I+    + L  +    +K + I L+ T+ +++ +A+ 
Sbjct: 700 PEFLNRIDEMIVFHALEKEHLKEIIAMMGNALTKR----LKEQDISLELTDAALEKIAEE 755

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED-ISFSASD---LQEKTVVIDAEYVRL 421
             +        GAR L+  +++ +ED +S         +   VVID  YV  
Sbjct: 756 GYD-----PQYGARPLRRALQKQVEDRLSEELLKGNVEKGNQVVID--YVND 800


>gi|296282903|ref|ZP_06860901.1| ATP-dependent Zn protease [Citromicrobium bathyomarinum JL354]
          Length = 659

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + + G  +A+  +   +    +  Q  + L   + PK  LLVG  G GKT ++R +A  A
Sbjct: 176 KDVAGIDEAREELEEIVE-FLKDPQRFSKLGGTI-PKGALLVGSPGTGKTLLARAIAGEA 233

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           G PF  +  + F E+ +VG     V  +       A  I+     D V
Sbjct: 234 GVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCILFIDEIDAV 280


>gi|292492354|ref|YP_003527793.1| ATP-dependent chaperone ClpB [Nitrosococcus halophilus Nc4]
 gi|291580949|gb|ADE15406.1| ATP-dependent chaperone ClpB [Nitrosococcus halophilus Nc4]
          Length = 865

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L R ++GQ++A   V+ A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEEALHRRVVGQEEAIEVVSNAIR------RSRAGLADPNRPNGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAAFLFDTEEAMVRIDMSEFMERHSVAR 645


>gi|289651391|ref|ZP_06482734.1| clpB protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|257452691|ref|ZP_05617990.1| cell division protein ftsH [Fusobacterium sp. 3_1_5R]
          Length = 729

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 12  IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I       + G  +AK     V   LR   + +++ A +     PK +LL+G  G GKT 
Sbjct: 276 ITQISFADVAGIDEAKQELEEVVEFLREPEKFKKIGARI-----PKGVLLLGSPGTGKTL 330

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 331 LAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFAKARKNAPCIVFIDEIDAVGRK 389


>gi|239996653|ref|ZP_04717177.1| ClpB protein [Alteromonas macleodii ATCC 27126]
          Length = 858

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDVLHKRVVGQEEAVEAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAGFMFDTEDAMVRIDMSEFMEKHSVARLV 647


>gi|269128670|ref|YP_003302040.1| ATPase AAA-2 domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268313628|gb|ACZ00003.1| ATPase AAA-2 domain protein [Thermomonospora curvata DSM 43183]
          Length = 837

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ ++R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEEELHKRVIGQEDAIKALSQSIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 560 KTLAEFLFGDEDALIQLDMSEFMEKHTVSR 589


>gi|291295274|ref|YP_003506672.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
 gi|290470233|gb|ADD27652.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 552 LEDELHKRVVGQDEAIVAVADAIR------RARAGLKDPNRPIGSFLFLGPTGVGKTELA 605

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 606 KTLAASLFDTEENMVRIDMSEYQEKHTVAR 635


>gi|158291141|ref|XP_312634.4| AGAP002334-PA [Anopheles gambiae str. PEST]
 gi|157018233|gb|EAA07487.4| AGAP002334-PA [Anopheles gambiae str. PEST]
          Length = 573

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
           + I GQ+ AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A   
Sbjct: 298 QDIAGQEVAKQALQEMVILPSVRPELFTGLRTP--AKGLLLFGPPGNGKTLLARAVATEC 355

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 356 SATFFSISAATLT-SKYVGDG-EKLVRALFAVA 386


>gi|116333185|ref|YP_794712.1| ATP-dependent Zn protease [Lactobacillus brevis ATCC 367]
 gi|116098532|gb|ABJ63681.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Lactobacillus brevis ATCC 367]
          Length = 699

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 34  LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93
           L+N  +   L A +     P  +LL GP G GKT +++ +A  A  PF  +  + F E+ 
Sbjct: 207 LKNPRKFVSLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAAVPFFSISGSDFVEM- 260

Query: 94  YVGRNVEQIIRDLVDVA 110
           +VG    ++ RDL + A
Sbjct: 261 FVGVGASRV-RDLFEQA 276


>gi|167644956|ref|YP_001682619.1| ATP-dependent chaperone ClpB [Caulobacter sp. K31]
 gi|167347386|gb|ABZ70121.1| ATP-dependent chaperone ClpB [Caulobacter sp. K31]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 36/278 (12%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 564 KMEDALRGRVVGQDEALEAVSDAVR------RARAGLHDPSKPIGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVA 110
           ++ LA       A   +++++++ E            GYVG +      E + R    V 
Sbjct: 618 TKALAEFMFADEAAITRMDMSEYMEKHSVSRMIGAPPGYVGYDEGGALTEAVRRRPYQVL 677

Query: 111 INIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           +    E    +V        ++ R+ D         NT  +    L    ++++E   +V
Sbjct: 678 LFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEFLANQEDGSDV 737

Query: 170 ADTSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
            +    + N          +  + E+  F ++  +     +R+ +Q+    L        
Sbjct: 738 EEVRPLVMNMVRGHFRPEFLNRIDEIILFKRLSRTNMGDIVRIQLQRVEKMLAERRMTVS 797

Query: 228 IDMDTVHRDSIQMVENY-------GIVFLDEFDKIVAR 258
           +D + +   + +  +          ++  D  D I   
Sbjct: 798 LDAEALQWLADKGYDPVYGARPLKRVIQKDLIDPIARN 835


>gi|121604836|ref|YP_982165.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Polaromonas
           naphthalenivorans CJ2]
 gi|120593805|gb|ABM37244.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Polaromonas
           naphthalenivorans CJ2]
          Length = 778

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A   +A A++            +D+    + L  GPTGVGKT  
Sbjct: 455 KTLERDLKSVVFGQDKALDILASAVK-----MARSGLGKDDKPIGSFLFSGPTGVGKTEA 509

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +++LA + G   I+ +++++ E            GYVG +   ++ + V    + 
Sbjct: 510 AKQLAYIMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 564


>gi|71660335|ref|XP_821885.1| ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL
           Brener]
 gi|70887274|gb|EAO00034.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi]
          Length = 564

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 29/186 (15%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IG  +AK+ V      L +  +  +L A L     PK  LL G  G GKT +++ +A
Sbjct: 87  EDVIGIPEAKQEVQQYVEFLTSPNKFTRLGARL-----PKGCLLTGEPGTGKTLLAKAVA 141

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA------ 126
             A  PF     + F E+  G   + V ++  +    A  IV     D +  +A      
Sbjct: 142 GEADVPFFSCSGSDFIELMGGSGPKRVRELFEEARSSAPAIVFIDEIDAIGSRAGKIGGS 201

Query: 127 ----SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173
                     ++L  L G           A +N ++   K L      D++++IE+ D +
Sbjct: 202 VSSEENRTINQLLAELDGLNTGTDAIIVIAATNFQDNIDKALLREGRFDRKVNIEMPDKA 261

Query: 174 SDISNF 179
           + +  F
Sbjct: 262 ARVDIF 267


>gi|331654052|ref|ZP_08355052.1| ATP-dependent chaperone protein ClpB [Escherichia coli M718]
 gi|331047434|gb|EGI19511.1| ATP-dependent chaperone protein ClpB [Escherichia coli M718]
          Length = 861

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 651


>gi|330881337|gb|EGH15486.1| clpB protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 855

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 567 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 620

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 621 EFLFDTEEAMVRIDMSEFMEKHSVAR 646


>gi|330831466|ref|YP_004394418.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Aeromonas
           veronii B565]
 gi|328806602|gb|AEB51801.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Aeromonas
           veronii B565]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ++A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDQLHSRVIGQEEAVDAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAEFLFDTQDAMVRIDMSEFMEKHSVARLV 647


>gi|317012128|gb|ADU82736.1| cell division protein (ftsH) [Helicobacter pylori Lithuania75]
          Length = 550

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNALKHQRTEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 IESDILEVKDKIA 398


>gi|312864373|ref|ZP_07724606.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           downei F0415]
 gi|311100094|gb|EFQ58305.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
           downei F0415]
          Length = 815

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ DA  AV+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 510 LEKELHKRVIGQDDAVSAVSRAI-----RRNQSGIRTGKRPIGSFMFLGPTGVGKTELAK 564

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA L     +  I+ +++++ E            GYVG
Sbjct: 565 ALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 603


>gi|302185257|ref|ZP_07261930.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|257466552|ref|ZP_05630863.1| cell division protein ftsH [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917707|ref|ZP_07913947.1| cell division protein ftsH [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691582|gb|EFS28417.1| cell division protein ftsH [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 729

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 12  IVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           I       + G  +AK     V   LR   + +++ A +     PK +LL+G  G GKT 
Sbjct: 276 ITQISFADVAGIDEAKQELEEVVEFLREPEKFKKIGARI-----PKGVLLLGSPGTGKTL 330

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           +++ +A  A  PF  +  ++F E+ +VG     V  +       A  IV     D V  +
Sbjct: 331 LAKAVAGEAKVPFFSMSGSEFVEM-FVGVGASRVRDLFAKARKNAPCIVFIDEIDAVGRK 389


>gi|29829142|ref|NP_823776.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
 gi|29606248|dbj|BAC70311.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
           MA-4680]
          Length = 842

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAVKALSKAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I +++++F+E   V R
Sbjct: 561 RALAEFLFGDEDALISLDMSEFSEKHTVSR 590


>gi|332528193|ref|ZP_08404221.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2]
 gi|332112761|gb|EGJ12554.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QMESRLHERVVGQDEAIVAVADAIR------RSRAGLSDPNRPLGSFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+V+++++ E   V R
Sbjct: 620 CKALASFLFDSEDHMIRVDMSEYMEKHSVSR 650


>gi|330966360|gb|EGH66620.1| clpB protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|302871695|ref|YP_003840331.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574554|gb|ADL42345.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + ++GQ +A  AV  A+       +  A ++D   P  + L +GPTGVGKT +
Sbjct: 566 ELDKILHKRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGSFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++T++ E   V R
Sbjct: 620 ARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|288962026|ref|YP_003452336.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288914306|dbj|BAI75792.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 894

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 26/131 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  +L   ++GQ++A RAV+ A+R      +  A L+D   P    L +GPTGVGKT ++
Sbjct: 561 MEDKLAERVVGQKEAVRAVSKAVR------RARAGLKDPSRPTGSFLFLGPTGVGKTELA 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           + LA           +++++++ E            GYVG +      E+I R    V +
Sbjct: 615 KALAAFLFDDETAITRLDMSEYMEKHAVSRMIGSPPGYVGYDDGGSLAERIRRRPYQVVL 674

Query: 112 NIVRESRRDEV 122
               E    +V
Sbjct: 675 LDEVEKAHPDV 685


>gi|284043144|ref|YP_003393484.1| ATPase AAA [Conexibacter woesei DSM 14684]
 gi|283947365|gb|ADB50109.1| ATPase AAA-2 domain protein [Conexibacter woesei DSM 14684]
          Length = 868

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQQ A   ++ A+R      +  A L+D   P    + +GP+GVGKT ++
Sbjct: 515 MEDELHKRVIGQQAAVDVISKAIR------RSRAGLKDPKRPTGSFVFLGPSGVGKTELA 568

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          ++++++++ E   V R V  
Sbjct: 569 RTLAEFLFGDEDAMVRIDMSEYMEKHAVSRLVGS 602


>gi|257094822|ref|YP_003168463.1| ATP-dependent chaperone ClpB [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047346|gb|ACV36534.1| ATP-dependent chaperone ClpB [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 859

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   + + ++GQ +A R VA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 563 QMEERMHQRVVGQDEAVRLVANAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTEL 616

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I+V++++F E   V R
Sbjct: 617 CKALAGFLFDSEEHLIRVDMSEFMEKHSVSR 647


>gi|149190363|ref|ZP_01868636.1| ClpB protein [Vibrio shilonii AK1]
 gi|148835852|gb|EDL52816.1| ClpB protein [Vibrio shilonii AK1]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 KMEDVLHKRVIGQAEAVEVVSDAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            + LA          +++++++F E   V R V
Sbjct: 615 CKTLASFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|254255396|ref|ZP_04948712.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
 gi|124901133|gb|EAY71883.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
          Length = 1065

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           + S L   +IGQ +A  AV+ A+R      +  A L+    P  + L +GPTGVGKT ++
Sbjct: 732 MESRLRERVIGQDEAVTAVSDAVR------RARAGLQARRRPTAVFLFLGPTGVGKTELA 785

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           + LA +        ++V+++++ E            GYVG +
Sbjct: 786 KALAEVVFGDEDAIVRVDMSEYMERHAVARLIGSPPGYVGYD 827


>gi|302671435|ref|YP_003831395.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio
           proteoclasticus B316]
 gi|302395908|gb|ADL34813.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Butyrivibrio
           proteoclasticus B316]
          Length = 741

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   +   I GQ +A   V  A++           + D     ++L VGPTGVGKT I+R
Sbjct: 445 LEERIKTRIFGQDEAVSQVVNAVK-----FSKAGLIEDGKPLASLLFVGPTGVGKTEIAR 499

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVG 96
            LA   G   I+ +++++ E            GYVG
Sbjct: 500 TLADELGVKLIRFDMSEYGEKHAVAKLIGSPAGYVG 535


>gi|297828269|ref|XP_002882017.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297327856|gb|EFH58276.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 491

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 220 DDVAGLDGAKQALLEMVILPAKRRDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 277

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E++++ L  VAI+  
Sbjct: 278 QATFFNVSASSLT-SKWVGE-AEKLVKTLFQVAISRQ 312


>gi|291234534|ref|XP_002737206.1| PREDICTED: fidgetin-like protein 1-like [Saccoglossus kowalevskii]
          Length = 687

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G Q AK  +   +     R  +   LR    PK +LL GP G GKT I + +A  +
Sbjct: 413 DDIAGLQFAKSTIKEIVIWPMLRPDIFNGLRGP--PKGLLLFGPPGTGKTLIGKCIASQS 470

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
           GA F  +  +  T   +VG   E+++R L  VA           V + A I  +E  +D+
Sbjct: 471 GATFFSISASSLT-SKWVGEG-EKMVRALFAVA----------RVHQPAVIFIDE--IDS 516

Query: 138 LVGKTATSNTREVFRKKLR 156
           L+ + +        R K  
Sbjct: 517 LLTQRSDGEHESSRRIKTE 535


>gi|291007864|ref|ZP_06565837.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 796

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ  A R+VA A+     R+        E    + L +GPTGVGKT ++R
Sbjct: 482 LEKVLRSKVIGQDAAVRSVAEAV-----RRARAGLADPERPIGSFLFLGPTGVGKTELAR 536

Query: 72  RLARLAGAPF------IKVEVTKFTEIGYVGR 97
            LAR     F      I+ ++ +F E   V R
Sbjct: 537 ALARAL---FGDAQRLIRFDMGEFQEKHTVSR 565


>gi|259505834|ref|ZP_05748736.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Corynebacterium efficiens YS-314]
 gi|259166576|gb|EEW51130.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Corynebacterium efficiens YS-314]
          Length = 839

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 552 MERFLGKRVVGQHEAVTAVSDAV-----RRSRAGVADPNRPTGSFLFLGPTGVGKTELAK 606

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            ++          +++++++++E            GYVG +    + + V          
Sbjct: 607 AVSEFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTT--V 664

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 665 LFDEV-EKAHPDVFDILLQVL 684


>gi|260587358|ref|ZP_05853271.1| cell division protein FtsH [Blautia hansenii DSM 20583]
 gi|260542225|gb|EEX22794.1| cell division protein FtsH [Blautia hansenii DSM 20583]
          Length = 567

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 157 RIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEA 214

Query: 111 INI 113
              
Sbjct: 215 KKN 217


>gi|222622312|gb|EEE56444.1| hypothetical protein OsJ_05634 [Oryza sativa Japonica Group]
          Length = 917

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A ++VA A+R      +  A L D   P  +++ +GPTGVGKT + 
Sbjct: 594 LEDVLHKRVIGQDIAVKSVANAIR------RSRAGLSDPNRPIASLMFMGPTGVGKTELG 647

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++++ E   V R V
Sbjct: 648 KTLAEFLFNTENALIRIDMSEYMEKHAVSRLV 679


>gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 838

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 24/265 (9%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G  DA + +   +    +  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 211 EDIGGLSDAIQKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 269

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQASI---NAE 131
            A FI +   +     Y G + E+   I ++  + A +I+     D +  +        E
Sbjct: 270 NAHFIAINGPEIMSKFY-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 328

Query: 132 ERIL-------DALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++       D L G+      A +N  +     LR     D+EI++ V D        
Sbjct: 329 KRVVSQLLTLMDGLKGRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQGRKEIL 388

Query: 180 DIP--GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
            I   G       +  E+ + +    R+             L+ + +    ++  + + S
Sbjct: 389 QIHTRGMPLEPSFDKEEVLAVLEELARRGGKFAEEVGKLKPLV-EAAQSGREIKEILKGS 447

Query: 238 IQMVENYGIVFLD-EFDKIVARDSG 261
            ++        +D   D+I  R  G
Sbjct: 448 GELYSEVKAKLIDRMLDRIADRTHG 472



 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G +D K+ +  A+    +  +    L     PK ILL GP G GKT +++ +A  +
Sbjct: 546 DDIGGLEDVKQELREAVEWPLKYPKAFERLGI-TPPKGILLYGPPGTGKTLLAKAVANES 604

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEV 122
            A FI +   +     +VG     + +I R     A  +V     D +
Sbjct: 605 EANFIAIRGPEVL-SKWVGETEKRIREIFRKARQAAPTVVFIDEIDAI 651


>gi|222529497|ref|YP_002573379.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor bescii DSM 6725]
 gi|222456344|gb|ACM60606.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor bescii DSM 6725]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L R ++GQ +A  AV  A+       +  A ++D   P    L +GPTGVGKT +
Sbjct: 566 ELDKILHRRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGTFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++T++ E   V R
Sbjct: 620 ARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|225551112|ref|ZP_03772058.1| chaperone ClpB [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225378927|gb|EEH01292.1| chaperone ClpB [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 704

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA 77
           ++IGQ +A + ++ A+       +  A + +   P  + L +GPTGVGKT +++ LA+  
Sbjct: 423 HVIGQDEAVKLISDAV------IRGRAGINNPNQPIGSFLFLGPTGVGKTELAKTLAKEL 476

Query: 78  ---GAPFIKVEVTKFTEIGYVGRNVEQIIRDL-VDVAINIVRESRRDEVR-------EQA 126
                  I+ +++++ E   V + V      +  + A  +    +R           E+A
Sbjct: 477 FDSQKALIRFDMSEYMEKHSVSKLVGAPPGYVGYENAGLLTESVKRKSYSILLFDEIEKA 536

Query: 127 SINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             +    +L  L  G    +   E+  K       S+   +  + +  ++          
Sbjct: 537 HPDVLNILLQILDEGSVKDAKNNEINFKNTIIIMTSNVGAEALLENNKTNALMELQKTFK 596

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +  +SE+          K  +  + K    L+++ SD L   D     SI+  +N  
Sbjct: 597 PEILNRISEII------FFNKLSKEVIFKISENLLKELSDLLAKQDY----SIKFNDNIA 646

Query: 246 IVFLDE 251
            + +DE
Sbjct: 647 KIMVDE 652


>gi|116672282|ref|YP_833215.1| ATPase [Arthrobacter sp. FB24]
 gi|116612391|gb|ABK05115.1| ATPase AAA-2 domain protein [Arthrobacter sp. FB24]
          Length = 889

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+ A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 571 MEEELGKRLIGQKKAVTAVSDAV-----RRARAGISDPNRPTGSFLFLGPTGVGKTELAK 625

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 626 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 656


>gi|310644235|ref|YP_003948994.1| atpase aaa-2 domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309249186|gb|ADO58753.1| ATPase AAA-2 domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 814

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 37/260 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 MEQLLHERVIGQEEAVKAVSRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           R LA          I+++++++ E            GYVG     Q+   +     ++V 
Sbjct: 556 RALAESMFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 615

Query: 116 ESRRDEVREQASINAEERILDALVGK--TATSNTREVFRKKL---------RDGEISDKE 164
               +    +A       +L  L     T +      FR  L         +  + +   
Sbjct: 616 LDEIE----KAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILTSNVGAQAIKRNSTL 671

Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224
               V D  +D  N        +      E  +++        +          LM +E 
Sbjct: 672 GFTAVVDAGADYDNMKGKVMDELKKSFRPEFLNRIDEIIVFHSLEEKHIAEIVSLMSEEL 731

Query: 225 DRLIDMDTVHRDSIQMVENY 244
            + ++   V  +     +N+
Sbjct: 732 RKRLNEYEVDFELTDKAKNF 751


>gi|260880964|ref|ZP_05403276.2| ATP-dependent chaperone protein ClpB [Mitsuokella multacida DSM
           20544]
 gi|260850057|gb|EEX70064.1| ATP-dependent chaperone protein ClpB [Mitsuokella multacida DSM
           20544]
          Length = 878

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   ++GQ +A +AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 576 LEDVLHARVVGQDEAVKAVSEAI------LRARAGIKDPNRPIGSFIFLGPTGVGKTELA 629

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 630 KTLAEALFDDERSMIRIDMSEYMEKHSVSR 659


>gi|224047636|ref|XP_002192150.1| PREDICTED: spastin isoform 1 [Taeniopygia guttata]
          Length = 612

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 338 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 395

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 396 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 426


>gi|195386192|ref|XP_002051788.1| GJ10403 [Drosophila virilis]
 gi|194148245|gb|EDW63943.1| GJ10403 [Drosophila virilis]
          Length = 512

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 28/248 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G + AK      + +  +R  L   +R    P+ +LL GP G GKT I++ +A  +
Sbjct: 239 EDIAGLEYAKSTFMETIIHPLQRPDLFKGVRRP--PRGVLLFGPPGTGKTLIAKCIASQS 296

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD-VAINIVRESRRDEVREQASINAEERILD 136
            A F  +  +  T   +VG   E++++ L    A++       DEV         + +L 
Sbjct: 297 RATFFSINPSSLT-SKWVGEG-EKLVKTLFAVAAVHQPAIIFMDEV---------DSLLS 345

Query: 137 ALVGKTATSNTR---EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG-------AS 186
                   S+ R   E F +        D  I I  A       +  +          + 
Sbjct: 346 QRSDNEHESSRRLKNEFFIQLDGAATNEDDHIVIIGATNRPQELDEAVRRRFVRRIYVSL 405

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR-DSIQMVENYG 245
                  ++  K++           VQ         E     DMD++ R  ++Q +    
Sbjct: 406 PEAPARQQIIEKLIQQVHHNLDEAQVQGLAEL---TEGYSGADMDSLCRYAAMQPLRALS 462

Query: 246 IVFLDEFD 253
              +D  D
Sbjct: 463 SSEIDSID 470


>gi|195170021|ref|XP_002025812.1| GL18240 [Drosophila persimilis]
 gi|194110665|gb|EDW32708.1| GL18240 [Drosophila persimilis]
          Length = 822

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 16  LDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
           L R + G  +AK+ V   +   +   + Q+L A      +P+  LL+GP G GKT +++ 
Sbjct: 344 LFRDVAGLSEAKQEVKEFVDYLKTPEKYQRLGAK-----VPRGALLLGPPGCGKTLLAKA 398

Query: 73  LARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +A  A  PF+ +  ++F E+  G     V  + ++    A  I+     D +
Sbjct: 399 VATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKIRAPCIIYIDEIDAI 450


>gi|220925227|ref|YP_002500529.1| ATP-dependent chaperone ClpB [Methylobacterium nodulans ORS 2060]
 gi|219949834|gb|ACL60226.1| ATP-dependent chaperone ClpB [Methylobacterium nodulans ORS 2060]
          Length = 878

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ++A  AVA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 568 MEEALSKRVVGQREAVEAVATAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELT 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 622 KALANFLFDDETAMVRLDMSEYMEKHSVAR 651


>gi|332799725|ref|YP_004461224.1| ATP-dependent chaperone ClpB [Tepidanaerobacter sp. Re1]
 gi|332697460|gb|AEE91917.1| ATP-dependent chaperone ClpB [Tepidanaerobacter sp. Re1]
          Length = 863

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A +AVA A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 570 LEDILHRRVVGQDEAVKAVADAI------LRARAGIKDPSRPIGSFIFLGPTGVGKTELA 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 624 KALAEALFDDERNIIRIDMSEYMEKHAVSR 653


>gi|313200327|ref|YP_004038985.1| ATP-dependent chaperone clpb [Methylovorus sp. MP688]
 gi|312439643|gb|ADQ83749.1| ATP-dependent chaperone ClpB [Methylovorus sp. MP688]
          Length = 886

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A R VA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 591 MEDKLHERVVGQDEAVRLVADAIR------RSRSGLSDPNRPYGSFLFLGPTGVGKTELC 644

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 645 KALANFLFDSEEHLVRIDMSEFMEKHSVSR 674


>gi|298485415|ref|ZP_07003504.1| ClpB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160065|gb|EFI01097.1| ClpB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|126653478|ref|ZP_01725571.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
 gi|126589756|gb|EAZ83890.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
          Length = 814

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL + ++GQ +A  A++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 502 QLEEELHKRVVGQGEAVEAISRAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 555

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           +R LA +        I+V+++++ E            GYVG +
Sbjct: 556 ARALAEVMFGDEDAMIRVDMSEYMEKHSTSRLVGSPPGYVGFD 598



 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 48/285 (16%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D    I +F   G   VG   L+   ++VM       IR+ + +    + +  + RL+
Sbjct: 532 LKDPKRPIGSFIFLGPTGVGKTELARALAEVMFGDEDAMIRVDMSE---YMEKHSTSRLV 588

Query: 229 ----------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSRE 269
                     D   +     +    Y +V LDE +K         +   + G        
Sbjct: 589 GSPPGYVGFDDGGQLTEKVRRK--PYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGR 646

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASG-AFHVSRPADLL--------PEIQGRF 320
            V      ++  S+V              +    + H    + +L        PE   R 
Sbjct: 647 VVDFRNTVVIMTSNVGADALKYQKSLGFNVGGADSKHNDMKSTMLEELKKAFRPEFLNRI 706

Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
              +   SL K   + I+    + L  +    +K + I L+ T+ +++ +A    +    
Sbjct: 707 DEMIVFHSLEKEHLKEIIAMMGNALTKR----LKEQDISLELTDAALEKIAQEGYD---- 758

Query: 381 VGDIGARRLQTVMERVLED-ISFSASD---LQEKTVVIDAEYVRL 421
               GAR L+  +++ +ED +S         +   VVID  YV  
Sbjct: 759 -PQYGARPLRRALQKQVEDRLSEELLKGNVEKGNHVVID--YVND 800


>gi|71736209|ref|YP_273034.1| clpB protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257481615|ref|ZP_05635656.1| clpB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627152|ref|ZP_06460106.1| clpB protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|71556762|gb|AAZ35973.1| clpB protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326251|gb|EFW82305.1| clpB protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330675|gb|EFW86652.1| clpB protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330869194|gb|EGH03903.1| clpB protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330988808|gb|EGH86911.1| clpB protein [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331008772|gb|EGH88828.1| clpB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|87122250|ref|ZP_01078133.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp.
           MED121]
 gi|86162570|gb|EAQ63852.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp.
           MED121]
          Length = 859

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           + +EL   +IGQ++A  AVA A+R      +  + L D   P    L +GPTGVGKT + 
Sbjct: 563 MENELHASVIGQEEAVTAVANAVR------RSRSGLADPNRPNGSFLFLGPTGVGKTELC 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA       A  ++V++++F E   V R +  
Sbjct: 617 KSLATFLFDTEASMVRVDMSEFMEKHSVARLIGS 650


>gi|328956579|ref|YP_004373965.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
 gi|328672903|gb|AEB28949.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4]
          Length = 721

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFENA 278


>gi|307294667|ref|ZP_07574509.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum
           L-1]
 gi|306879141|gb|EFN10359.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum
           L-1]
          Length = 649

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      L++  +  +L   +     PK  LLVG  G GKT ++R +A
Sbjct: 165 DDVAGIDEAREELQEIVEFLKDPSKFARLGGKI-----PKGALLVGSPGTGKTLLARAIA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 220 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 269


>gi|296224143|ref|XP_002757920.1| PREDICTED: spastin isoform 2 [Callithrix jacchus]
          Length = 584

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 310 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 367

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 368 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 398


>gi|238881317|gb|EEQ44955.1| hypothetical protein CAWG_03255 [Candida albicans WO-1]
          Length = 687

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I        D
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRIRELFSQARD 315

Query: 109 VAINIVRESRRDEV------REQA-SINAEERILDALVGKTATS--------NTREVFRK 153
            A  I+     D +      ++QA +     ++L  L G + T         N  E   K
Sbjct: 316 KAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTEGIIIIGATNFPESLDK 375

Query: 154 KLRDGEISDKEIDIEVA 170
            L      DKE+ +++ 
Sbjct: 376 ALTRPGRFDKEVIVDLP 392


>gi|297204729|ref|ZP_06922126.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|197710804|gb|EDY54838.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 879

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A + VA A+       +  + +RD   P  + + +GPTGVGKT ++
Sbjct: 570 LDDILRERVIGQDEAVKLVADAI------IRARSGIRDPRRPIGSFIFLGPTGVGKTELA 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LAR         ++++++++ E   V R V
Sbjct: 624 KTLARALFDSEENMVRLDMSEYQERHTVSRLV 655


>gi|189467488|ref|ZP_03016273.1| hypothetical protein BACINT_03877 [Bacteroides intestinalis DSM
           17393]
 gi|189435752|gb|EDV04737.1| hypothetical protein BACINT_03877 [Bacteroides intestinalis DSM
           17393]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA       +   +++++++ E   V R V
Sbjct: 614 KALAEFLFDDESMMTRIDMSEYQEKHSVSRLV 645


>gi|158425824|ref|YP_001527116.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
 gi|158332713|dbj|BAF90198.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 879

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 562 MEQELAKRVIGQSEAVAAVSTAVR------RARAGLQDPNRPIGSFLFIGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 616 KALASFLFDDETAMVRLDMSEYMEKHSVSR 645


>gi|154277946|ref|XP_001539803.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1]
 gi|150413388|gb|EDN08771.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1]
          Length = 843

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 555 DDVAGLEVAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARSVATES 612

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 613 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 646


>gi|157376629|ref|YP_001475229.1| ATPase [Shewanella sediminis HAW-EB3]
 gi|157319003|gb|ABV38101.1| ATPase AAA-2 domain protein [Shewanella sediminis HAW-EB3]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ +A  AV+ A+     R+        +    + L +GPTGVGKT + +
Sbjct: 562 MEEALHSRVIGQNEAVDAVSNAI-----RRSRAGLSDPDRPIGSFLFLGPTGVGKTELCK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA+      +  +++++++F E   V R
Sbjct: 617 ALAKFLFDTESALVRIDMSEFMEKHSVAR 645


>gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila]
 gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210]
          Length = 708

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 10  REIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           + I +     ++G  + K  +      L+N  +  +  A L     PK ILLVGP G GK
Sbjct: 270 KNIKTRF-SDVLGIDEFKEELIELVDYLKNPQKYHEAGAKL-----PKGILLVGPPGTGK 323

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           T ++R LA  AG  F     ++F E+ +VG     V ++ +   + A +I+     D V
Sbjct: 324 TLLARALAGEAGCSFFYKSGSEFDEM-FVGVGASRVRELFKKAREKAPSIIFIDEIDSV 381


>gi|28868056|ref|NP_790675.1| clpB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971039|ref|ZP_03399159.1| clpB protein [Pseudomonas syringae pv. tomato T1]
 gi|301384237|ref|ZP_07232655.1| clpB protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059470|ref|ZP_07251011.1| clpB protein [Pseudomonas syringae pv. tomato K40]
 gi|302134988|ref|ZP_07260978.1| clpB protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|54035835|sp|Q889C2|CLPB_PSESM RecName: Full=Chaperone protein ClpB
 gi|28851292|gb|AAO54370.1| clpB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213924147|gb|EEB57722.1| clpB protein [Pseudomonas syringae pv. tomato T1]
 gi|330878991|gb|EGH13140.1| clpB protein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331018391|gb|EGH98447.1| clpB protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|325089147|gb|EGC42457.1| vacuolar sorting protein [Ajellomyces capsulatus H88]
          Length = 835

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 547 DDVAGLEVAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARSVATES 604

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 605 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 638


>gi|313678896|ref|YP_004056636.1| ATP-dependent metalloprotease FtsH [Mycoplasma bovis PG45]
 gi|312950740|gb|ADR25335.1| ATP-dependent metalloprotease FtsH [Mycoplasma bovis PG45]
          Length = 676

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 18  RYIIGQQDA---KRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + +   L+N  +      +L    MP  ILL GP G GKT +++  A
Sbjct: 200 KDVAGNKEAVEEIKEIVDYLKNPKKY-----ELAGARMPHGILLGGPPGTGKTLLAKATA 254

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
             A  PF  +  + F E+ +VG   +++
Sbjct: 255 GEANVPFYFISASNFVEM-FVGLGAKRV 281


>gi|297570854|ref|YP_003696628.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931201|gb|ADH92009.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 747

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G  +A   +      + +  + +++ A +     P+ +LL GP G GKT +++ +A 
Sbjct: 246 DVAGADEAVEELQEIEEFIDHPDKFRKMGAKI-----PRGVLLYGPPGTGKTLLAKAVAG 300

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            AG PF  +  ++F E+ +VG    ++ RDL   A
Sbjct: 301 EAGVPFFHISASEFVEM-FVGVGASRV-RDLFTKA 333


>gi|225560859|gb|EEH09140.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
          Length = 843

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 555 DDVAGLEVAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARSVATES 612

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 613 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 646


>gi|218190191|gb|EEC72618.1| hypothetical protein OsI_06111 [Oryza sativa Indica Group]
          Length = 1219

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ  A ++VA A+R      +  A L D   P  +++ +GPTGVGKT + 
Sbjct: 896 LEDVLHKRVIGQDIAVKSVANAIR------RSRAGLSDPNRPIASLMFMGPTGVGKTELG 949

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          I+++++++ E   V R V
Sbjct: 950 KTLAEFLFNTENALIRIDMSEYMEKHAVSRLV 981


>gi|134046686|ref|YP_001098171.1| ATPase central domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132664311|gb|ABO35957.1| AAA ATPase, central domain protein [Methanococcus maripaludis C5]
          Length = 371

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IGQ DAK+   I +    +  + P ++  E  PKNIL  G  G GKT ++R LA   
Sbjct: 126 EEVIGQLDAKKKCKIVI----KYLENP-EIFGEWAPKNILFYGSPGTGKTMLARALATET 180

Query: 78  GAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             P   ++ T+     +G   + +E +     +    I+     D +
Sbjct: 181 EVPLYLIKATELIGDHVGDGSKQIESLYESASENTPCIIFIDELDAI 227


>gi|113868225|ref|YP_726714.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
 gi|113527001|emb|CAJ93346.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ +A R V+ A+R      +  A L DE  P  + L +GPTGVGKT +
Sbjct: 564 KMEDRLHGRVVGQDEAVRLVSDAIR------RSRAGLADENRPYGSFLFLGPTGVGKTEL 617

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 618 CKALAEFMFDSEEHLIRIDMSEFMEKHSVSR 648


>gi|91776550|ref|YP_546306.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
 gi|91710537|gb|ABE50465.1| ATPase AAA-2 [Methylobacillus flagellatus KT]
          Length = 861

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT ++
Sbjct: 566 MEEKLHERVVGQDEAVRLVSDAIR------RSRSGLADPNRPYGSFLFLGPTGVGKTELT 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 620 KALAGFLFDSEDHLIRIDMSEFMEKHSVAR 649


>gi|300871007|ref|YP_003785879.1| ATP-dependent metalloprotease FtsH [Brachyspira pilosicoli 95/1000]
 gi|300688707|gb|ADK31378.1| ATP-dependent metalloprotease, FtsH [Brachyspira pilosicoli
           95/1000]
          Length = 698

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E V    + + G ++AK  +   ++   +       L  ++ PK +LLVGP G GKT +
Sbjct: 171 KEDVKVTFKDVEGCKEAKEELQEVVQ-FLKDASKFTRLGAKI-PKGVLLVGPPGTGKTLL 228

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
           ++ +A  A  PF  +  ++F E+ +VG    ++ RDL + 
Sbjct: 229 AKAVAGEANVPFFSMSGSEFVEM-FVGVGASRV-RDLFEQ 266


>gi|302786648|ref|XP_002975095.1| hypothetical protein SELMODRAFT_174539 [Selaginella moellendorffii]
 gi|300157254|gb|EFJ23880.1| hypothetical protein SELMODRAFT_174539 [Selaginella moellendorffii]
          Length = 885

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + ++GQ+ A +AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 558 IDDELHKRVVGQEPAVQAVADAI------QRSRAGLSDPNRPIASFMFMGPTGVGKTELA 611

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 612 KALAAYLFNTEEALIRIDMSEYMEKHTVSR 641


>gi|319763932|ref|YP_004127869.1| ATP-dependent chaperone clpb [Alicycliphilus denitrificans BC]
 gi|330823804|ref|YP_004387107.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601]
 gi|317118493|gb|ADV00982.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans BC]
 gi|329309176|gb|AEB83591.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601]
          Length = 867

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A  AVA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 564 MEEKLHERVVGQDEAISAVANAIR------RSRSGLSDPNRPLGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAGFLFDSEEHMVRIDMSEFMEKHSVAR 647


>gi|302520257|ref|ZP_07272599.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|302429152|gb|EFL00968.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
          Length = 875

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ+ A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRLIGQKQAVAAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|239980295|ref|ZP_04702819.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291452160|ref|ZP_06591550.1| ATP-dependent Clp protease [Streptomyces albus J1074]
 gi|291355109|gb|EFE82011.1| ATP-dependent Clp protease [Streptomyces albus J1074]
          Length = 840

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 507 MEDELHKRVIGQKDAVKALSRAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 560

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I +++++F+E   V R
Sbjct: 561 KALAEFLFGDEEALISLDMSEFSEKHTVSR 590


>gi|227552663|ref|ZP_03982712.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257888631|ref|ZP_05668284.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257897414|ref|ZP_05677067.1| peptidase M41 [Enterococcus faecium Com12]
 gi|293378828|ref|ZP_06624983.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
 gi|227178192|gb|EEI59164.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330]
 gi|257824685|gb|EEV51617.1| peptidase M41 [Enterococcus faecium 1,141,733]
 gi|257833979|gb|EEV60400.1| peptidase M41 [Enterococcus faecium Com12]
 gi|292642369|gb|EFF60524.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1]
          Length = 703

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPMADDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|223041973|ref|ZP_03612157.1| chaperone ClpB [Actinobacillus minor 202]
 gi|223017230|gb|EEF15658.1| chaperone ClpB [Actinobacillus minor 202]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MENVLHTRVIGQNEAVEAVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|167625158|ref|YP_001675452.1| ATPase [Shewanella halifaxensis HAW-EB4]
 gi|167355180|gb|ABZ77793.1| ATPase AAA-2 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   +IGQ +A  +V+ A+     R+        +    + L +GPTGVGKT + 
Sbjct: 561 KMEDALHERVIGQNEAVNSVSNAI-----RRSRAGLSDPDRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA+      +  +++++++F E   V R V
Sbjct: 616 KALAKFLFDTESALVRIDMSEFMEKHSVSRLV 647


>gi|332227157|ref|XP_003262758.1| PREDICTED: spastin isoform 1 [Nomascus leucogenys]
          Length = 616

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 342 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 399

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 400 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 430


>gi|328883472|emb|CCA56711.1| ClpB protein [Streptomyces venezuelae ATCC 10712]
          Length = 863

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A +AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 568 MEDELGKRLIGQSEAVQAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 622

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 623 ALADFLFDDERAMIRIDMSEYGEKHSVARLV 653


>gi|311694582|gb|ADP97455.1| ATPase AAA-2 domain protein [marine bacterium HP15]
          Length = 912

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           E+   L + ++GQ +A  AV+ A+     R                  +GPTGVGKT ++
Sbjct: 599 EMEQRLHQRVVGQDEAVTAVSDAV-----RLSRAGLGDRRRPIATFFFLGPTGVGKTELT 653

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 654 KALAETVFGDEEAMIRIDMSEYMERHTVAR 683


>gi|325982689|ref|YP_004295091.1| ATP-dependent chaperone ClpB [Nitrosomonas sp. AL212]
 gi|325532208|gb|ADZ26929.1| ATP-dependent chaperone ClpB [Nitrosomonas sp. AL212]
          Length = 860

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A R V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 565 MEQKLHDRVVGQDEAVRLVSDAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+V++++F E   V R
Sbjct: 619 KALAGFLFDSEDHLIRVDMSEFMEKHSVAR 648


>gi|239608100|gb|EEQ85087.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ER-3]
          Length = 831

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 543 DDVAGLEIAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 600

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 601 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 634


>gi|224047638|ref|XP_002192184.1| PREDICTED: spastin isoform 2 [Taeniopygia guttata]
          Length = 580

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 306 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 363

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 364 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 394


>gi|184152912|ref|YP_001841253.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
 gi|183224256|dbj|BAG24773.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112]
          Length = 680

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  +  +L A +     P  +LL GP G GKT +++ +A  +G PF  +  + F
Sbjct: 188 IVEFLKNPKKFTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDF 242

Query: 90  TEIGYVGRNVEQIIRDLVDVA 110
            E+ +VG    ++ RDL D A
Sbjct: 243 VEM-FVGVGASRV-RDLFDQA 261


>gi|134103380|ref|YP_001109041.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004401|ref|ZP_06562374.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916003|emb|CAM06116.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 828

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ++A  AVA A+     R+ L      +    + L +GPTGVGKT ++
Sbjct: 527 KLEEALHERVVGQEEAVTAVAEAV-----RRSLAGMGDPDRPVGSFLFLGPTGVGKTELA 581

Query: 71  RRLARLAGAPF------IKVEVTKFTEIGYVGRNV 99
           + LA L    F      ++ ++++F E   V R V
Sbjct: 582 KALAGLL---FGDEDRLVRFDMSEFQERHTVSRLV 613


>gi|18400735|ref|NP_565586.1| CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/
           nucleoside-triphosphatase/ nucleotide binding / protein
           binding [Arabidopsis thaliana]
 gi|17979454|gb|AAL50064.1| At2g25140/F13D4.100 [Arabidopsis thaliana]
 gi|25090122|gb|AAN72234.1| At2g25140/F13D4.100 [Arabidopsis thaliana]
 gi|330252568|gb|AEC07662.1| casein lytic proteinase B4 [Arabidopsis thaliana]
          Length = 964

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ  A ++VA A+R      +  A L D   P  + + +GPTGVGKT ++
Sbjct: 647 LEEVLHHRVIGQDMAVKSVADAIR------RSRAGLSDPNRPIASFMFMGPTGVGKTELA 700

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++V+++++ E   V R V
Sbjct: 701 KALAGYLFNTENAIVRVDMSEYMEKHSVSRLV 732


>gi|11875211|ref|NP_055761.2| spastin isoform 1 [Homo sapiens]
 gi|114576879|ref|XP_001164367.1| PREDICTED: spastin isoform 1 [Pan troglodytes]
 gi|12230611|sp|Q9UBP0|SPAST_HUMAN RecName: Full=Spastin; AltName: Full=Spastic paraplegia 4 protein
 gi|6273491|emb|CAB60141.1| spastin protein [Homo sapiens]
 gi|6273493|emb|CAB60208.1| spastin protein [Homo sapiens]
 gi|119620866|gb|EAX00461.1| spastin, isoform CRA_a [Homo sapiens]
 gi|311348858|gb|ADP91574.1| spastin [Homo sapiens]
 gi|311348861|gb|ADP91576.1| spastin [Homo sapiens]
 gi|311348864|gb|ADP91578.1| spastin [Homo sapiens]
 gi|311348867|gb|ADP91580.1| spastin [Homo sapiens]
 gi|311348870|gb|ADP91582.1| spastin [Homo sapiens]
 gi|311348873|gb|ADP91584.1| spastin [Homo sapiens]
 gi|311348876|gb|ADP91586.1| spastin [Homo sapiens]
 gi|311348879|gb|ADP91588.1| spastin [Homo sapiens]
 gi|311348882|gb|ADP91590.1| spastin [Homo sapiens]
 gi|311348885|gb|ADP91592.1| spastin [Homo sapiens]
 gi|311348888|gb|ADP91594.1| spastin [Homo sapiens]
 gi|311348891|gb|ADP91596.1| spastin [Homo sapiens]
 gi|311348894|gb|ADP91598.1| spastin [Homo sapiens]
 gi|311348897|gb|ADP91600.1| spastin [Homo sapiens]
 gi|311348900|gb|ADP91602.1| spastin [Homo sapiens]
 gi|311348903|gb|ADP91604.1| spastin [Homo sapiens]
 gi|311348906|gb|ADP91606.1| spastin [Homo sapiens]
 gi|311348909|gb|ADP91608.1| spastin [Homo sapiens]
 gi|311348912|gb|ADP91610.1| spastin [Homo sapiens]
 gi|311348915|gb|ADP91612.1| spastin [Homo sapiens]
 gi|311348918|gb|ADP91614.1| spastin [Homo sapiens]
 gi|311348921|gb|ADP91616.1| spastin [Homo sapiens]
 gi|311348924|gb|ADP91618.1| spastin [Homo sapiens]
 gi|311348927|gb|ADP91620.1| spastin [Homo sapiens]
 gi|311348930|gb|ADP91622.1| spastin [Homo sapiens]
 gi|311348933|gb|ADP91624.1| spastin [Homo sapiens]
 gi|311348936|gb|ADP91626.1| spastin [Homo sapiens]
 gi|311348939|gb|ADP91628.1| spastin [Homo sapiens]
 gi|311348942|gb|ADP91630.1| spastin [Homo sapiens]
 gi|311348945|gb|ADP91632.1| spastin [Homo sapiens]
 gi|311348948|gb|ADP91634.1| spastin [Homo sapiens]
 gi|311348951|gb|ADP91636.1| spastin [Homo sapiens]
 gi|311348954|gb|ADP91638.1| spastin [Homo sapiens]
 gi|311348957|gb|ADP91640.1| spastin [Homo sapiens]
 gi|311348960|gb|ADP91642.1| spastin [Homo sapiens]
 gi|311348963|gb|ADP91644.1| spastin [Homo sapiens]
 gi|311348966|gb|ADP91646.1| spastin [Homo sapiens]
 gi|311348969|gb|ADP91648.1| spastin [Homo sapiens]
 gi|311348972|gb|ADP91650.1| spastin [Homo sapiens]
 gi|311348975|gb|ADP91652.1| spastin [Homo sapiens]
          Length = 616

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 342 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 399

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 400 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 430


>gi|68478796|ref|XP_716560.1| hypothetical protein CaO19.1252 [Candida albicans SC5314]
 gi|68478899|ref|XP_716504.1| hypothetical protein CaO19.8836 [Candida albicans SC5314]
 gi|46438174|gb|EAK97509.1| hypothetical protein CaO19.8836 [Candida albicans SC5314]
 gi|46438231|gb|EAK97565.1| hypothetical protein CaO19.1252 [Candida albicans SC5314]
          Length = 687

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I        D
Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRIRELFSQARD 315

Query: 109 VAINIVRESRRDEV------REQA-SINAEERILDALVGKTATS--------NTREVFRK 153
            A  I+     D +      ++QA +     ++L  L G + T         N  E   K
Sbjct: 316 KAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTEGIIIIGATNFPESLDK 375

Query: 154 KLRDGEISDKEIDIEVA 170
            L      DKE+ +++ 
Sbjct: 376 ALTRPGRFDKEVIVDLP 392


>gi|329961410|ref|ZP_08299533.1| ATP-dependent chaperone protein ClpB [Bacteroides fluxus YIT 12057]
 gi|328531887|gb|EGF58710.1| ATP-dependent chaperone protein ClpB [Bacteroides fluxus YIT 12057]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIAAVSDAVR------RSRAGLQDPKRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|322381155|ref|ZP_08055158.1| hypothetical protein PL1_0067 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154731|gb|EFX47002.1| hypothetical protein PL1_0067 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 816

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ S L   +IGQ++A +AV+ A+R      +  A L+D   P    + +GPTGVGKT +
Sbjct: 501 KMESILHSRVIGQEEAVKAVSRAIR------RARAGLKDPKRPMGSFIFLGPTGVGKTEL 554

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           +R LA          I+++++++ E            GYVG
Sbjct: 555 ARALAESLFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVG 595


>gi|302814603|ref|XP_002988985.1| hypothetical protein SELMODRAFT_159833 [Selaginella moellendorffii]
 gi|300143322|gb|EFJ10014.1| hypothetical protein SELMODRAFT_159833 [Selaginella moellendorffii]
          Length = 885

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  EL + ++GQ+ A +AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 558 IDDELHKRVVGQEPAVQAVADAI------QRSRAGLSDPNRPIASFMFMGPTGVGKTELA 611

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I+++++++ E   V R
Sbjct: 612 KALAAYLFNTEEALIRIDMSEYMEKHTVSR 641


>gi|327349285|gb|EGE78142.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ATCC 18188]
          Length = 840

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L + LR+    + +LL GP G GKT ++R +A  +
Sbjct: 552 DDVAGLEIAKNALKEAVVYPFLRPDLFSGLREP--ARGMLLFGPPGTGKTMLARAVATES 609

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            + F  V  +  T   + G + E+++R L  +A ++
Sbjct: 610 HSTFFSVSASSLT-SKWHGES-EKLVRALFGLAKHM 643


>gi|295696093|ref|YP_003589331.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295411695|gb|ADG06187.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 536

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 18/130 (13%)

Query: 28  RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           R +   LR+  + +++ A++     PK ++L GP G GKT ++R +A  AG  F+    +
Sbjct: 120 RDIVDYLRDPGKYRRMGAEM-----PKGVILYGPPGTGKTLLARAVAGEAGVEFVACSGS 174

Query: 88  KFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNT 147
           +F E  YVG   ++I RDL D    I R          A I  +E  LDAL  +   + +
Sbjct: 175 QFVE-QYVGLGAKKI-RDLFDQVRRIGRP---------AIIFFDE--LDALGRRRGETGS 221

Query: 148 REVFRKKLRD 157
            + + + L +
Sbjct: 222 SQEWDQTLNE 231


>gi|282889749|ref|ZP_06298288.1| hypothetical protein pah_c004o115 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500323|gb|EFB42603.1| hypothetical protein pah_c004o115 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 479

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL++ ++GQ  A +A++ A+R      +  + L D   P    L +GPTGVGKT ++
Sbjct: 178 LEKELEKRVVGQDIAVKAISEAIR------RSRSGLSDPGRPMGAFLFLGPTGVGKTELA 231

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           + LA          I+++++++ E   V + +  
Sbjct: 232 KALAEQLFNQDEALIRLDMSEYMEKHSVSKLIGS 265


>gi|226943326|ref|YP_002798399.1| ATP-dependent protease [Azotobacter vinelandii DJ]
 gi|226718253|gb|ACO77424.1| ATP-dependent protease [Azotobacter vinelandii DJ]
          Length = 854

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEELLHQRVIGQNEAVTAVANAVR------RSRAGLADPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEALVRIDMSEFMEKHSVAR 645


>gi|268590194|ref|ZP_06124415.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Providencia
           rettgeri DSM 1131]
 gi|291314475|gb|EFE54928.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Providencia
           rettgeri DSM 1131]
          Length = 760

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68
           + + S L   + GQ  A  +++ A++         A L  E  P  + L  GPTGVGKT 
Sbjct: 451 KTLDSRLKMLVFGQDKAIDSLSEAIK------MNRAGLGLENKPVGSFLFAGPTGVGKTE 504

Query: 69  ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++ +LA+      ++ +++++ E            GYVG +   ++ D V    + 
Sbjct: 505 VTVQLAKALDIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHS 560


>gi|215408549|emb|CAR31124.1| HflB protein [Candidatus Phytoplasma mali]
          Length = 176

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P+ +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|254455364|ref|ZP_05068793.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082366|gb|EDZ59792.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
          Length = 614

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+  LLVGP G GKT ++R +A  AG PF  +  + F E+ +VG     V  +      
Sbjct: 166 IPRGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQGKK 224

Query: 109 VAINIVRESRRDEV-REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
            +  I+     D V R + +            G    ++ RE    +L          + 
Sbjct: 225 NSPCIIFIDEIDAVGRSRGA------------GLGGGNDEREQTLNQLLVEMDGFDTNEG 272

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214
            +   +++  +   P     G  +   + S     GR+K +++ V+K
Sbjct: 273 VIIIAATNRPDVLDPALLRPGRFDRQVVVSNPDIIGREKILKVHVKK 319


>gi|206901239|ref|YP_002251189.1| negative regulator of genetic competence ClpC/mecB [Dictyoglomus
           thermophilum H-6-12]
 gi|206740342|gb|ACI19400.1| negative regulator of genetic competence ClpC/mecB [Dictyoglomus
           thermophilum H-6-12]
          Length = 823

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           +  EL + II Q +A R V+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 510 MEEELHKRIISQDEAVRVVSRAIR------RSRSGLKDPRRPIGVFMFLGPTGVGKTELA 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+ ++++F E   V R
Sbjct: 564 RALAEYLFGNENALIRFDMSEFMEKHTVSR 593


>gi|156050767|ref|XP_001591345.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980]
 gi|154692371|gb|EDN92109.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 750

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 16/119 (13%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK A+  A+   + R  L   LR+    + +LL GP G GKT ++R +A  +
Sbjct: 607 EDVAGLEVAKNALKEAVVYPFLRPDLFMGLREP--ARGMLLFGPPGTGKTMLARAVATES 664

Query: 78  GAPFIKVEVTKFTEIGYVGRNV------------EQIIRDLVDVAINIVRESRRDEVRE 124
            + F  +  +  T   + G ++              +   L++++++ +R  + ++   
Sbjct: 665 KSTFFSISASSLTR--FSGSDITALAKDAAMGPLRSLGEKLLEMSMDDIRPMQMEDFEA 721


>gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5]
 gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5]
          Length = 784

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 25/249 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++  + +   +    R  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 177 EDIGGLKEEVKKIREMVELPMRYPELFDKLGIE-PPKGVLLAGPPGTGKTLLAKAVANEA 235

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEV---REQASINAE 131
           GA F  +   +     YVG   E    I  +  + + +I+     D V   R++AS   E
Sbjct: 236 GANFYTINGPEIM-SKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVE 294

Query: 132 ER-------ILDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSS----- 174
            R       +LD L G+      A +N  +     LR     D+E+ I + D  +     
Sbjct: 295 RRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMALRRPGRLDRELTIGIPDRHARKEIL 354

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
            I   ++P         +  + ++++G   + KI  +V+         E ++++  + + 
Sbjct: 355 QIHTRNMPLQPDYEKNEVIPVLNELIGEFERTKIENTVKLVEKASSEAEIEKILKDEDIE 414

Query: 235 RDSIQMVEN 243
                 +  
Sbjct: 415 DKVKSKLNQ 423



 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G +D K+ +  A+    + +++   +     PK +LL GP G GKT +++ +A  + 
Sbjct: 508 DVGGLEDIKQDLKEAVEWPIKNREMFERMGI-RPPKGVLLFGPPGTGKTLLAKAVANESE 566

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A FI V+  +     +VG +   + +I R     A  ++     D +  +
Sbjct: 567 ANFISVKGPEIF-SKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPK 615


>gi|56961903|ref|YP_173625.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           clausii KSM-K16]
 gi|56908137|dbj|BAD62664.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
           clausii KSM-K16]
          Length = 818

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ++A ++++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 507 KMEEILHERVVGQEEAVKSISKAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 560

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           +R +A          I+++++++ E     R V      +       + E  R +
Sbjct: 561 ARAVAETLFGDEDAVIRIDMSEYMEKHATSRLVGSPPGYVGHEEGGQLTEKIRRK 615


>gi|332187979|ref|ZP_08389711.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
 gi|332011980|gb|EGI54053.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17]
          Length = 869

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L R +IGQ+ A  AV+ A+R      +  A L+D   P    L +GPTGVGKT ++
Sbjct: 563 MEEALGRRVIGQRQAVTAVSRAIR------RARAGLQDPDRPMGSFLFLGPTGVGKTELT 616

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA       +  +++++++F E   V R
Sbjct: 617 KALAGFLFDDDSAMVRIDMSEFMEKHSVAR 646


>gi|327479114|gb|AEA82424.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 644

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            +IG  +AK+A++      + R            PK +LL G  G GKT +++ LA  + 
Sbjct: 164 DVIGAAEAKQALSDV--TAYLRDPGAYARLGARPPKGVLLTGEPGTGKTQLAKALASESN 221

Query: 79  APFIKVEVTKFTEIGY-VG-RNVEQIIRDLVDVAINIVRESRRDEVREQASI 128
           A FI+V  + F+ + + VG + V+ + R     A  I+     D + ++A  
Sbjct: 222 ASFIQVTGSDFSSMYFGVGIQKVKALFRTARKQAPCIIFIDEIDGIGKRAEQ 273


>gi|312793685|ref|YP_004026608.1| ATP-dependent chaperone clpb [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180825|gb|ADQ40995.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L R ++GQ +A  AV  A+       +  A ++D   P    L +GPTGVGKT +
Sbjct: 566 ELDKILHRRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGTFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++T++ E   V R
Sbjct: 620 ARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|282892123|ref|ZP_06300598.1| hypothetical protein pah_c207o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498018|gb|EFB40362.1| hypothetical protein pah_c207o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 851

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 103/278 (37%), Gaps = 39/278 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   IIGQ +A R V+ A+R      +  AD++D   P    + +GPTGVGKT +
Sbjct: 531 KMEEILRNSIIGQDEAIRTVSRAIR------RSRADIKDPNRPIGAFMFLGPTGVGKTLL 584

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE----V 122
           +R LA          I+V+++++ E   V R        +       + E  R      V
Sbjct: 585 ARLLAIHLFGGEDALIQVDMSEYMEKFAVSRMTGSPPGYVGHEEGGQLTEQVRQRPYSVV 644

Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182
                  A   ++D L+         + F +K+               D  + I      
Sbjct: 645 LFDEIEKAHPDVMDLLLQILEEGRLSDSFGRKV---------------DFRNTIIIMTSN 689

Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKC-YPELMRDESDRLIDMDT---VHRDSI 238
            GA +   +    F  + GS     I+  ++K        +  +RL DM     + R+++
Sbjct: 690 LGADLIKKSTEVGFGAMEGSMDYAHIKEKIEKATKKHFKPEFLNRLNDMVIFHPLKREAL 749

Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276
             V         E  K+  R +   I +  +   +D L
Sbjct: 750 LQVIEL------EIVKVQKRLARRDITIELDAKAKDFL 781


>gi|189218258|ref|YP_001938900.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
           [Methylacidiphilum infernorum V4]
 gi|189185116|gb|ACD82301.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
           [Methylacidiphilum infernorum V4]
          Length = 836

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 99/261 (37%), Gaps = 47/261 (18%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + +IGQ +A  A++ AL      Q+  ADL+D   P  + + +GPTGVGKT +++ 
Sbjct: 518 AELRKRVIGQDEAIEALSRAL------QRSRADLKDPKRPIGSFIFLGPTGVGKTMLAKT 571

Query: 73  LARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVRES 117
           LA          I+++++++ E            GYVG     Q+   +     ++V   
Sbjct: 572 LAEYVFGSAEALIQIDMSEYMEKFNVSRLIGSPPGYVGYEEGGQLTEKIRRRPYSVVLFD 631

Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177
             +    +A  +    +L  L     T +       +                   + I 
Sbjct: 632 EIE----KAHPDVWNILLQILEDGIVTDSLGRKIDFR-------------------NTII 668

Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237
                 GA +G+      F         ++++  + +      + E    +D D +   S
Sbjct: 669 IMTSNVGAEMGLKPGVLGFRSKQDEVSYEQMKERMMETVKRTFKPEFLNRVD-DIIVFRS 727

Query: 238 IQMVENYGIVFLDEFDKIVAR 258
           +   +   IV L E +K+  R
Sbjct: 728 LNREDMVKIVQL-EVNKVAER 747


>gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 709

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 21/210 (10%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVD 108
            P+ +LL GP G GKT +++ +A    A F  +   +     Y G + E+   + R+  +
Sbjct: 210 APRGVLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEIMGK-YYGESEERLREMFREAEE 268

Query: 109 VAINIVRESRRDEV---REQASINAEERILDALVGKTATSNTR------------EVFRK 153
            A +I+     D +   R++ S   E+RI+  L+        R            +    
Sbjct: 269 NAPSIIFIDEIDSIAPKRDEVSGELEKRIVSQLLSLMDGMTRRGKVVVIAATNRPDSIDP 328

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIP--GGASVGILNLSELFSKVMGSGRKKKIRMS 211
            LR     D+EI+I +           I   G    G +NL ++     G        ++
Sbjct: 329 ALRRPGRFDREIEIGIPGREGREQILGIHTRGMPLDGDVNLEKIAGVTHGFVGADLEVLT 388

Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
            +     L R   +  +D + +  D +Q +
Sbjct: 389 KEAAMGSLRRVLPEIDLDQERISGDILQKI 418



 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G    K  + +A+    +  +          PK ++L GP G GKT I++ +AR+ 
Sbjct: 450 DDVGGLDGLKEELRMAIEWPVKH-KEAVKYAGVSPPKGLMLHGPPGTGKTLIAKAVARMT 508

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINI 113
            + FI V+  +     +VG     V +I R     A  I
Sbjct: 509 ESNFISVKGPELL-SKWVGESEKGVREIFRKARQAAPCI 546


>gi|32452329|emb|CAD59396.1| putative ClpB1 protein [Propionibacterium freudenreichii subsp.
           shermanii]
          Length = 729

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + + + ++GQQ A +AV+ A+     R+             + + +GPTGVGKT ++
Sbjct: 564 DMENRIGKRLVGQQAAVKAVSDAV-----RRSRAGISDPNRPTGSFMFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 619 KALADFLFDDETAMVRIDMSEYMEKHSVSRLV 650


>gi|32265608|ref|NP_859640.1| ATP-dependent Clp protease ClpA [Helicobacter hepaticus ATCC 51449]
 gi|54035810|sp|Q7VJY3|CLPB_HELHP RecName: Full=Chaperone protein ClpB
 gi|32261656|gb|AAP76706.1| ATP-dependent CLP protease ClpA [Helicobacter hepaticus ATCC 51449]
          Length = 859

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I SEL + ++GQ DA +A+A A+    +R              + L +GPTGVGKT  ++
Sbjct: 564 IESELAKSVVGQDDAIKAIARAI----KR-NKAGLNDASRPIGSFLFLGPTGVGKTQCAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 TLAEFLFDNAKSLVRIDMSEYMEKHAVSRLV 649


>gi|323188385|gb|EFZ73676.1| ATP-dependent chaperone ClpB [Escherichia coli RN587/1]
          Length = 823

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 528 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 581

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 582 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 613


>gi|323167772|gb|EFZ53467.1| ATP-dependent chaperone ClpB [Shigella sonnei 53G]
          Length = 823

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 528 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 581

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 582 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 613


>gi|295102061|emb|CBK99606.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 766

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + IIGQ +A   VA A+    +R +  ADL     P + + VGPTGVGKT + +
Sbjct: 470 LEAELKKKIIGQDEAVHLVAQAV----KRSR--ADLSGRRRPASFIFVGPTGVGKTELVK 523

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           +LA        P I+++++++ E   V R +      +             ++VR +
Sbjct: 524 QLANQLFDGPDPLIRLDMSEYMEKYAVSRMIGSPPGYV----GYEEAGQLTEKVRRR 576


>gi|269962555|ref|ZP_06176903.1| clpB protein [Vibrio harveyi 1DA3]
 gi|269832750|gb|EEZ86861.1| clpB protein [Vibrio harveyi 1DA3]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQAEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|257899973|ref|ZP_05679626.1| peptidase M41 [Enterococcus faecium Com15]
 gi|293571078|ref|ZP_06682119.1| Cell division protease FtsH [Enterococcus faecium E980]
 gi|257837885|gb|EEV62959.1| peptidase M41 [Enterococcus faecium Com15]
 gi|291608861|gb|EFF38142.1| Cell division protease FtsH [Enterococcus faecium E980]
          Length = 703

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPMADDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|261338170|ref|ZP_05966054.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
 gi|270276807|gb|EFA22661.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
          Length = 691

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G+  A      +   L++  + + L A +     P+ +LL GP G GKT ++R +A 
Sbjct: 214 DVAGEDAAVQEVEEIKDFLKDPSKYKALGARI-----PRGVLLYGPPGTGKTLLARAIAG 268

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            AG PF  +  + F E+ +VG    ++ RD+ D A   
Sbjct: 269 EAGVPFYSMAGSDFVEM-FVGLGASRV-RDVFDEAKKN 304


>gi|254500302|ref|ZP_05112453.1| ATPase, AAA family [Labrenzia alexandrii DFL-11]
 gi|222436373|gb|EEE43052.1| ATPase, AAA family [Labrenzia alexandrii DFL-11]
          Length = 865

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           +IGQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT +++ LA    
Sbjct: 570 VIGQSEAIHAVSTAVR------RARAGLQDPNRPIGSFMFLGPTGVGKTELTKALASFLF 623

Query: 78  --GAPFIKVEVTKFTEIGYVGR 97
              +  ++++++++ E   V R
Sbjct: 624 DDDSAMVRIDMSEYMEKHSVAR 645


>gi|182411953|ref|YP_001817019.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|310946751|sp|B1ZMG6|FTSH_OPITP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|177839167|gb|ACB73419.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 614

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 21/167 (12%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G  +AK  V      LR+  R +Q    +     PK +LLVGP G GKT +++ +A  
Sbjct: 176 VAGCDEAKDEVYEVVEFLRDPARFRQTGGRM-----PKGVLLVGPPGTGKTMLAKAVAGE 230

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133
           A A F  +  + F E+ YVG     V  + +   + A +I+     D +  Q    AE  
Sbjct: 231 ARANFYSLSGSDFVEL-YVGVGASRVRSLFKKARETAPSIIFIDEIDAIGRQ-RSAAE-- 286

Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
                    A     +     L   +  D +  + V   ++     D
Sbjct: 287 ------SGGAQQEHDQTLNALLVAMDGFDSDDAVVVFGATNRPDTMD 327


>gi|153812538|ref|ZP_01965206.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
 gi|149831463|gb|EDM86551.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174]
          Length = 595

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 18  RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G Q+ K     V   L+   +   + A +     PK ++LVGP G GKT +++ +A
Sbjct: 146 QNVAGLQEEKEDLVEVVDFLKAPQKYTNVGARI-----PKGVILVGPPGTGKTLLAKAVA 200

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV----AINIVRESRRDEVREQ 125
             AG PF  +  + F E+ +VG    ++ RDL +     A  I+     D V  Q
Sbjct: 201 GEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFEEGKKHAPCIIFIDEIDAVARQ 253


>gi|125991900|ref|NP_001075060.1| spastin [Bos taurus]
 gi|226694297|sp|A2VDN5|SPAST_BOVIN RecName: Full=Spastin
 gi|124829112|gb|AAI33328.1| Spastin [Bos taurus]
 gi|296482694|gb|DAA24809.1| spastin [Bos taurus]
          Length = 614

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 340 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 397

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 398 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 428


>gi|229541281|ref|ZP_04430341.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
 gi|229325701|gb|EEN91376.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
          Length = 718

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 20/125 (16%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A R VA A+     R+             + L VGPTGVGKT +++
Sbjct: 423 LEENLAKKVIGQEEAVRKVAKAI-----RRSRAGLKAQSRPIGSFLFVGPTGVGKTELTK 477

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVG-RNVEQIIRDLVDVAINIVRE 116
           RLA          I+++++++ E            GYVG  +  Q+   +     +I+  
Sbjct: 478 RLAEELFGTKDAMIRLDMSEYMEKHSVSKLIGAPAGYVGYEDAGQLTEKVRHNPYSIILL 537

Query: 117 SRRDE 121
              ++
Sbjct: 538 DEIEK 542



 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 90/259 (34%), Gaps = 49/259 (18%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   S  I +F   G   VG   L++  ++ +   +   IR+ + +    + +    +LI
Sbjct: 452 LKAQSRPIGSFLFVGPTGVGKTELTKRLAEELFGTKDAMIRLDMSE---YMEKHSVSKLI 508

Query: 229 ----------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSRE 269
                     D   +          Y I+ LDE +K         +   D G        
Sbjct: 509 GAPAGYVGYEDAGQLTEKV--RHNPYSIILLDEIEKAHPDVLNMFLQILDDGRLTDAQGR 566

Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL-----PEIQGRFPVRV 324
            V      ++  S+  T++       + F  S A   S   D L     PE   RF   V
Sbjct: 567 TVSFKDTVIIMTSNAGTQF---KHKTVGFAKSEAIKESNILDSLGDFFKPEFLNRFDNIV 623

Query: 325 HLKSLNKSDFRLIL----TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380
             K L K     I+     + +  L  Q         I LD T ++ + +A++  +    
Sbjct: 624 EFKPLEKEHLVKIVDLMLGELDETLNEQ--------AITLDVTAEAKEKIAELGYD---- 671

Query: 381 VGDIGARRLQTVMERVLED 399
               GAR ++ V++  +ED
Sbjct: 672 -PAFGARPIRRVIQEKIED 689


>gi|119486634|ref|ZP_01620684.1| ATPase [Lyngbya sp. PCC 8106]
 gi|119456251|gb|EAW37383.1| ATPase [Lyngbya sp. PCC 8106]
          Length = 873

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + SEL + ++GQ++A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LDSELHQRVVGQEEAVTAVAEAI------QRSRAGLGDPKRPVASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 622 KALAAYLFDTEEAMVRIDMSEYMEKHAVSR 651


>gi|83941677|ref|ZP_00954139.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfitobacter
           sp. EE-36]
 gi|83847497|gb|EAP85372.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfitobacter
           sp. EE-36]
          Length = 871

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ  A +AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEDQLHNRVIGQNLAVKAVSNAVR------RARAGLNDEARPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 614 KAVAEFLFDDENAMVRIDMSEFMEKHAVAR 643


>gi|318062534|ref|ZP_07981255.1| putative ATP-dependent protease subunit [Streptomyces sp. SA3_actG]
 gi|318078816|ref|ZP_07986148.1| putative ATP-dependent protease subunit [Streptomyces sp. SA3_actF]
          Length = 875

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL R +IGQ+ A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDELGRRLIGQKQAVAAVSDAV-----RRTRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYGEKHSVARLV 651


>gi|317507295|ref|ZP_07965037.1| ATP-dependent chaperone ClpB [Segniliparus rugosus ATCC BAA-974]
 gi|316254398|gb|EFV13726.1| ATP-dependent chaperone ClpB [Segniliparus rugosus ATCC BAA-974]
          Length = 849

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++ Q+ A RAV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MEEELGKRVVSQKKAIRAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA          I+++++++ E            GYVG +    + + V      +   
Sbjct: 618 ALAEFLFDDERAIIRIDMSEYAEKHSVARLMGAPPGYVGYDQGGQLTEAVRRRPYSI--V 675

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 676 LFDEV-EKAHPDVFDVLLQVL 695


>gi|261327758|emb|CBH10735.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 877

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           ++I G ++AK+ V      LR+  R   L A      +P   LL+GP G GKT +++ +A
Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAK-----VPTGALLLGPPGTGKTLLAKAVA 364

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
             +G  FI V  + F E+ YVG    ++ R L +VA    
Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALRV-RQLFEVAKKQR 402


>gi|302537185|ref|ZP_07289527.1| cell division protein [Streptomyces sp. C]
 gi|302446080|gb|EFL17896.1| cell division protein [Streptomyces sp. C]
          Length = 640

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 41  QQLPADLRDE--LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98
            + P   RD    MP  +LL GP G GKT ++R +A  AG PF     ++F E+  VG  
Sbjct: 219 LKNPQQYRDMGARMPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEM-IVGVG 277

Query: 99  VEQIIRDLVDVA 110
             ++ R+L   A
Sbjct: 278 ASRV-RELFAEA 288


>gi|240949095|ref|ZP_04753443.1| ATP-dependant Clp protease chain B [Actinobacillus minor NM305]
 gi|240296490|gb|EER47122.1| ATP-dependant Clp protease chain B [Actinobacillus minor NM305]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MENVLHTRVIGQNEAVEAVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 616 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 647


>gi|213419074|ref|ZP_03352140.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 363

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ +A  A+  A++             +     + L  GPTGVGKT
Sbjct: 134 TLKNLGDRLKMLVFGQDNAIEALTEAIK-----MSRAGLGHEHKPVGSFLFAGPTGVGKT 188

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 189 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 244


>gi|197284585|ref|YP_002150457.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227356767|ref|ZP_03841152.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|194682072|emb|CAR41610.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227163057|gb|EEI47992.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 764

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + ++L   + GQ  A  A+A +++            ++     + L  GPTGVGKT +
Sbjct: 454 KNLDNQLKMLVFGQDQAIHALAESIK-----MSRAGLGQENKPVGSFLFAGPTGVGKTEV 508

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           + +LA+      ++ +++++ E            GYVG +   ++ D V      
Sbjct: 509 TVQLAKALNIKLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKNPYS 563


>gi|149050667|gb|EDM02840.1| spastin (predicted) [Rattus norvegicus]
          Length = 299

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 90  DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 147

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 148 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 178


>gi|315640558|ref|ZP_07895666.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
 gi|315483762|gb|EFU74250.1| cell division protein FtsH [Enterococcus italicus DSM 15952]
          Length = 699

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G ++ K+ + + +    +  +  + L   + P  +LL GP G GKT +++ +A  AG
Sbjct: 204 DVAGAEEEKQEL-VEVVEFLKDPRRFSALGARI-PAGVLLEGPPGTGKTLLAKAVAGEAG 261

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            PF  +  + F E+ +VG    ++ RDL D A   
Sbjct: 262 VPFYSISGSDFVEM-FVGVGASRV-RDLFDTAKKN 294


>gi|298384357|ref|ZP_06993917.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 1_1_14]
 gi|298262636|gb|EFI05500.1| ATP-dependent chaperone protein ClpB [Bacteroides sp. 1_1_14]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA       +   +++++++ E   V R V
Sbjct: 614 KALAEFLFDDESMMTRIDMSEYQEKHSVSRLV 645


>gi|297627074|ref|YP_003688837.1| Chaperone clpB 1 (ATP-dependent Clp protease B1) (Clp chaperone)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922839|emb|CBL57417.1| Chaperone clpB 1 (ATP-dependent Clp protease B1) (Clp chaperone)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 858

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + + + ++GQQ A +AV+ A+     R+             + + +GPTGVGKT ++
Sbjct: 556 DMENRIGKRLVGQQAAVKAVSDAV-----RRSRAGISDPNRPTGSFMFLGPTGVGKTELA 610

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 611 KALADFLFDDETAMVRIDMSEYMEKHSVSRLV 642


>gi|296411613|ref|XP_002835524.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629310|emb|CAZ79681.1| unnamed protein product [Tuber melanosporum]
          Length = 836

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ++A +AVA A+     R              + L  GP+G GKT +++
Sbjct: 501 MEKYLSKQVIGQREAVKAVANAI-----RLSRSGLSNPNQPIASFLFCGPSGTGKTLLTK 555

Query: 72  RLARLA-GAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA      P   I+ +++++ E   V R +      +   +   + E+ R  
Sbjct: 556 SLAEFLFDDPKSMIRFDMSEYMEKHSVSRLIGAPPGYIGHDSGGQLTEALRRR 608


>gi|260892526|ref|YP_003238623.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
 gi|260864667|gb|ACX51773.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
          Length = 500

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 16/224 (7%)

Query: 19  YIIGQQDAKRAVAIAL--RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
            I GQ+ A   +  AL     +      A        K ILL GP G GKT +++  A  
Sbjct: 67  DIGGQRAAVEELKEALDFIKHY----PQARRLGVRPLKGILLTGPPGTGKTLLAKAAAGY 122

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD 136
             A FI    ++F E+ Y G   ++I R+L  +A    RE  +   + +A I  +E  +D
Sbjct: 123 TDAVFIAASGSEFVEM-YAGVGAQRI-RNLFRLA----REKAQQSGKNRAIIFIDE--ID 174

Query: 137 ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELF 196
            L GK    N+   + + L    +    I  +       I+  +        +L      
Sbjct: 175 VLGGKRGKVNSHLEYDQTLNQLLVEMDGIKGDEKVNILVIAATNRADLLDPALLRPGRFD 234

Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
            +V      K+ R+ + + +        D  +D++ V ++++  
Sbjct: 235 RQVRVDLPDKEGRLEILRLHTRNKPLAPD--VDLEAVAKETLGF 276


>gi|241766421|ref|ZP_04764297.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
 gi|241363400|gb|EER58901.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
          Length = 868

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ ++L   ++GQ++A  AVA A+R      +  + L D   P    L +GPTGVGKT +
Sbjct: 565 QMETKLHERVVGQEEAIAAVANAIR------RSRSGLSDPNRPTGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          I++++++F E   V R
Sbjct: 619 CKALAGFLFDSEEHLIRIDMSEFMEKHSVAR 649


>gi|332358139|gb|EGJ35971.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK49]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++ ++ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTLVED 778


>gi|328944694|gb|EGG38855.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1087]
 gi|332360105|gb|EGJ37919.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1056]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.4 bits (83), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLADKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|324995871|gb|EGC27782.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK678]
 gi|327460002|gb|EGF06341.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1]
 gi|327488592|gb|EGF20392.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1058]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|317179319|dbj|BAJ57107.1| cell division protein [Helicobacter pylori F30]
          Length = 550

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +     +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLSERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q +E      L+  DKI 
Sbjct: 379 KHQRIEITEGDILEVKDKIA 398


>gi|294012452|ref|YP_003545912.1| cell division protease FtsH [Sphingobium japonicum UT26S]
 gi|292675782|dbj|BAI97300.1| cell division protease FtsH [Sphingobium japonicum UT26S]
          Length = 649

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      L++  +  +L   +     PK  LLVG  G GKT ++R +A
Sbjct: 165 DDVAGIDEAREELQEIVEFLKDPSKFARLGGKI-----PKGALLVGSPGTGKTLLARAIA 219

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 220 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 269


>gi|326316084|ref|YP_004233756.1| ATP-dependent chaperone ClpB [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372920|gb|ADX45189.1| ATP-dependent chaperone ClpB [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 869

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A  AVA A+R      +  + L D   P    L +GPTGVGKT +
Sbjct: 565 QMEDKLHERVVGQDEAIAAVANAIR------RSRSGLADPNRPMGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 619 CKALAGFLFDSEEHLVRIDMSEFMEKHSVAR 649


>gi|254778989|ref|YP_003057094.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
 gi|254000900|emb|CAX28836.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
          Length = 550

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHTLNYLKIAKICVGFSGAMLATLINESALNALKHQREEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 TESDILEVKDKIA 398


>gi|69245450|ref|ZP_00603445.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257879861|ref|ZP_05659514.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257882587|ref|ZP_05662240.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257886015|ref|ZP_05665668.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257891702|ref|ZP_05671355.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257894177|ref|ZP_05673830.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|258614290|ref|ZP_05712060.1| cell division protein FtsH [Enterococcus faecium DO]
 gi|260559533|ref|ZP_05831714.1| peptidase M41 [Enterococcus faecium C68]
 gi|261206684|ref|ZP_05921382.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289565046|ref|ZP_06445500.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|293553699|ref|ZP_06674323.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|293563200|ref|ZP_06677656.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|293570122|ref|ZP_06681202.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|294614893|ref|ZP_06694784.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|294618635|ref|ZP_06698174.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|294623711|ref|ZP_06702544.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|314938208|ref|ZP_07845508.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|314943103|ref|ZP_07849902.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|314949300|ref|ZP_07852643.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
 gi|314952233|ref|ZP_07855248.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|314992091|ref|ZP_07857541.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|314996274|ref|ZP_07861330.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|68195832|gb|EAN10268.1| Peptidase M41, FtsH [Enterococcus faecium DO]
 gi|257814089|gb|EEV42847.1| peptidase M41 [Enterococcus faecium 1,230,933]
 gi|257818245|gb|EEV45573.1| peptidase M41 [Enterococcus faecium 1,231,502]
 gi|257821871|gb|EEV49001.1| peptidase M41 [Enterococcus faecium 1,231,501]
 gi|257828062|gb|EEV54688.1| peptidase M41 [Enterococcus faecium 1,231,410]
 gi|257830556|gb|EEV57163.1| peptidase M41 [Enterococcus faecium 1,231,408]
 gi|260074632|gb|EEW62953.1| peptidase M41 [Enterococcus faecium C68]
 gi|260079177|gb|EEW66870.1| peptidase M41 [Enterococcus faecium TC 6]
 gi|289163253|gb|EFD11099.1| peptidase M41 [Enterococcus faecium D344SRF]
 gi|291587494|gb|EFF19378.1| putative cell division protease FtsH [Enterococcus faecium E1071]
 gi|291592179|gb|EFF23797.1| putative cell division protease FtsH [Enterococcus faecium E1636]
 gi|291595154|gb|EFF26492.1| putative cell division protease FtsH [Enterococcus faecium E1679]
 gi|291596926|gb|EFF28144.1| putative cell division protease FtsH [Enterococcus faecium U0317]
 gi|291602274|gb|EFF32502.1| putative cell division protease FtsH [Enterococcus faecium E1039]
 gi|291604850|gb|EFF34328.1| putative cell division protease FtsH [Enterococcus faecium E1162]
 gi|313589518|gb|EFR68363.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a01]
 gi|313593305|gb|EFR72150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B]
 gi|313595628|gb|EFR74473.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A]
 gi|313598162|gb|EFR77007.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C]
 gi|313642404|gb|EFS06984.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium
           TX0133a04]
 gi|313644306|gb|EFS08886.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082]
          Length = 703

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 51/261 (19%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  R  +L A +     P  +LL GP G GKT +++ +A 
Sbjct: 189 DVAGAEEEKQELVEVVEFLKDPRRFVELGARI-----PAGVLLEGPPGTGKTLLAKAVAG 243

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
            AG PF  +  + F E+ +VG    ++ RDL + A               A I  +E  +
Sbjct: 244 EAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETAKKNAP----------AIIFIDE--I 289

Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA-SVGILNLSE 194
           DA+             R++         E +  +     ++  FD   G   +   N S+
Sbjct: 290 DAVG------------RQRGAGMGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSD 337

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD- 253
           +    +    +   ++ V +                D   R++I  V        D+ D 
Sbjct: 338 VLDPALLRPGRFDRQILVGR---------------PDVKGREAILRVHARNKPMADDVDL 382

Query: 254 KIVARDSGNGIGVSREGVQRD 274
           K+VA+ +    G   E V  +
Sbjct: 383 KVVAQQTPGFAGADLENVLNE 403


>gi|324989876|gb|EGC21819.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK353]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|323703795|ref|ZP_08115433.1| ATP-dependent chaperone ClpB [Desulfotomaculum nigrificans DSM 574]
 gi|323531264|gb|EGB21165.1| ATP-dependent chaperone ClpB [Desulfotomaculum nigrificans DSM 574]
          Length = 865

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R +IGQ +A +AVA A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 566 LDELLHRRVIGQHEAVQAVADAV------LRARAGIKDPNRPIGSFIFLGPTGVGKTELA 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA+         I+++++++ E   V R
Sbjct: 620 RALAQALFDDERNMIRIDMSEYMEKHTVAR 649


>gi|303238756|ref|ZP_07325288.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302593635|gb|EFL63351.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 617

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G ++AK+    +   L +  R ++        + PK  +L GP G GKT +++ LA  
Sbjct: 180 VAGNEEAKQNMMELVDFLVSPERFKKFG-----VVPPKGTVLFGPPGTGKTLLAKALAGT 234

Query: 77  AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           AG PFI V  + F E  +VG    +I R L + A
Sbjct: 235 AGVPFIAVSGSDFVEK-FVGVGASRI-RQLFEFA 266


>gi|307725857|ref|YP_003909070.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
 gi|307586382|gb|ADN59779.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003]
          Length = 637

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)

Query: 18  RYIIGQQDAK---RAVAIALRN--RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72
             I G  +AK   R +   LR+  R+R+           +PK +L+VG  G GKT +++ 
Sbjct: 182 DDIAGIDEAKAELRQLVAFLRDAERYRKLGG-------KIPKGVLIVGAPGTGKTLLAKA 234

Query: 73  LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +A  A  PF  V    F E+ +VG    ++ RDL + A
Sbjct: 235 VAGEASVPFFSVSGAAFVEM-FVGVGAARV-RDLFEQA 270


>gi|260950831|ref|XP_002619712.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238847284|gb|EEQ36748.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 677

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I        +
Sbjct: 244 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRIRELFGQARE 302

Query: 109 VAINIVRESRRDEV------REQA-SINAEERILDALVGKTATS--------NTREVFRK 153
            A  I+     D +      ++QA +     ++L  L G + T         N  E   K
Sbjct: 303 KAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTEGIIIIGATNFPESLDK 362

Query: 154 KLRDGEISDKEIDIEVADTSSDISNF 179
            L      DKE+ +E+ D    +   
Sbjct: 363 ALTRPGRFDKEVIVELPDVRGRVDIL 388


>gi|29350005|ref|NP_813508.1| endopeptidase Clp ATP-binding subunit B [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572749|ref|ZP_04850149.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 1_1_6]
 gi|54035840|sp|Q89YY3|CLPB_BACTN RecName: Full=Chaperone protein ClpB
 gi|29341916|gb|AAO79702.1| endopeptidase Clp ATP-binding chain B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837649|gb|EES65740.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 1_1_6]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AVA A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA       +   +++++++ E   V R V
Sbjct: 614 KALAEFLFDDESMMTRIDMSEYQEKHSVSRLV 645


>gi|83855155|ref|ZP_00948685.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfitobacter
           sp. NAS-14.1]
 gi|83842998|gb|EAP82165.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sulfitobacter
           sp. NAS-14.1]
          Length = 871

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ  A +AV+ A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 560 MEDQLHNRVIGQNLAVKAVSNAVR------RARAGLNDEARPLGSFLFLGPTGVGKTELT 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          +++++++F E   V R
Sbjct: 614 KAVAEFLFDDENAMVRIDMSEFMEKHAVAR 643


>gi|187730565|ref|YP_001880920.1| ATP-dependent Clp protease ATP-binding subunit [Shigella boydii CDC
           3083-94]
 gi|187427557|gb|ACD06831.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Shigella
           boydii CDC 3083-94]
          Length = 758

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           + + +   L   + GQ  A  A+  A++             +     + L  GPTGVGKT
Sbjct: 448 TLKNLGDRLKMLVFGQDKAIEALTEAIK-----MARAGLGHEHKPVGSFLFAGPTGVGKT 502

Query: 68  AISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            ++ +L++  G   ++ +++++ E            GYVG +   ++ D V
Sbjct: 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 553


>gi|312869843|ref|ZP_07729984.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
 gi|311094622|gb|EFQ52925.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3]
          Length = 709

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 281


>gi|311033365|sp|Q7WSY8|CLPB_PROFC RecName: Full=Chaperone protein ClpB
          Length = 866

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + + + ++GQQ A +AV+ A+     R+             + + +GPTGVGKT ++
Sbjct: 564 DMENRIGKRLVGQQAAVKAVSDAV-----RRSRAGISDPNRPTGSFMFLGPTGVGKTELA 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          ++++++++ E   V R V
Sbjct: 619 KALADFLFDDETAMVRIDMSEYMEKHSVSRLV 650


>gi|299822456|ref|ZP_07054342.1| ATP-dependent Clp protease [Listeria grayi DSM 20601]
 gi|299815985|gb|EFI83223.1| ATP-dependent Clp protease [Listeria grayi DSM 20601]
          Length = 721

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + + + L+  +IGQ+ A   VA A+     R+      +      + L VGPTGVGKT +
Sbjct: 417 KHLEAHLNEKVIGQKQAVGKVAKAI-----RRSRVGLKQKNRPIGSFLFVGPTGVGKTEL 471

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
            R LA+         I+++++++ E            GYVG +
Sbjct: 472 GRTLAKELFGTEEAMIRLDMSEYMEKHSVAKLIGSPPGYVGHD 514



 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 44/258 (17%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   +  I +F   G   VG   L    +K +    +  IR+ + +    + +    +LI
Sbjct: 448 LKQKNRPIGSFLFVGPTGVGKTELGRTLAKELFGTEEAMIRLDMSE---YMEKHSVAKLI 504

Query: 229 ---------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREG 270
                    D      + I+    Y I+ LDE +K         +   + G         
Sbjct: 505 GSPPGYVGHDEAGQLTEKIRR-HPYSILLLDEIEKAHPDVQHMFLQILEDGRLTDSQGRT 563

Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHIL-FIASGAFHVSRPADLL--------PEIQGRFP 321
           V      ++  S+     G+++ +  + F         + +D L        PE   R  
Sbjct: 564 VSFKDTVIIMTSNA----GTVDKEASVGFTMLKEKQSEKDSDSLDKLGYFFKPEFLNRLD 619

Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381
             V    L K +   I+    + ++     ++  E + +D T+ + + L D+  +     
Sbjct: 620 SVVEFNQLEKDNLLEIV----NLMLADLNTMLADEEVTIDVTDAAKEKLIDLGYDSK--- 672

Query: 382 GDIGARRLQTVMERVLED 399
              GAR L+  ++  LED
Sbjct: 673 --FGARPLRRTIQEQLED 688


>gi|224475673|ref|YP_002633279.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420280|emb|CAL27094.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 821

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ+DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQKDAVTSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGDEDAMIRVDMSEFMEKHAVSRLV 587



 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    LNK + + I+T   + L  +    +  + I +  TE + + +A+ 
Sbjct: 700 PEFLNRVDDIIVFHKLNKDELKEIVTKMVNKLTDR----LSEQDINISVTEKAKEKIAEE 755

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVID 415
             +        GAR L + +   +E  L ++    + L+ K VV+D
Sbjct: 756 GYD-----PQYGARPLIRAIQKTVEDNLSELILDGNQLEGKDVVVD 796


>gi|156973326|ref|YP_001444233.1| hypothetical protein VIBHAR_01007 [Vibrio harveyi ATCC BAA-1116]
 gi|156524920|gb|ABU70006.1| hypothetical protein VIBHAR_01007 [Vibrio harveyi ATCC BAA-1116]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQAEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|153834659|ref|ZP_01987326.1| chaperone ClpB [Vibrio harveyi HY01]
 gi|148868911|gb|EDL67969.1| chaperone ClpB [Vibrio harveyi HY01]
          Length = 857

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQAEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLASFMFDSEDAMVRIDMSEFMEKHSVARLV 647


>gi|156098597|ref|XP_001615314.1| ATP-dependent metalloprotease [Plasmodium vivax SaI-1]
 gi|148804188|gb|EDL45587.1| ATP-dependent metalloprotease, putative [Plasmodium vivax]
          Length = 950

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   +   + + L A +     PK  LL G  G GKT +++ +A  
Sbjct: 404 VAGMKQAKEEIMEFVDFLKTPSKYEALGAKM-----PKGALLCGAPGTGKTLLAKAVAGE 458

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 459 ANVPFFNISGSDFIEV-FVGIGPSRVRELFAQARKHAPSIIFIDEIDAVGRK 509


>gi|134100291|ref|YP_001105952.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912914|emb|CAM03027.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 768

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ  A R+VA A+     R+        E    + L +GPTGVGKT ++R
Sbjct: 454 LEKVLRSKVIGQDAAVRSVAEAV-----RRARAGLADPERPIGSFLFLGPTGVGKTELAR 508

Query: 72  RLARLAGAPF------IKVEVTKFTEIGYVGR 97
            LAR     F      I+ ++ +F E   V R
Sbjct: 509 ALARAL---FGDAQRLIRFDMGEFQEKHTVSR 537


>gi|57233578|ref|YP_180810.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Dehalococcoides ethenogenes 195]
 gi|57224026|gb|AAW39083.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
           [Dehalococcoides ethenogenes 195]
          Length = 824

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   IIGQ++A   ++ A+R      +  A L+D   P  N + +GPTGVGKT ++
Sbjct: 504 MEEALHERIIGQEEAIVTISKAVR------RARAGLKDPRHPIGNFVFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA+         +++++++F E            GYVG +
Sbjct: 558 RALAQFMFGSEDALVRLDMSEFMEKFAVSRLVGAPPGYVGYD 599



 Score = 38.8 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   SLNK   R I+     ++I Q    M  +GI L+ T+ + D L   
Sbjct: 707 PEFLNRIDSVVVFHSLNKEQIRSIVDLMLKSVIKQ----MSEKGIGLEVTDSAKDLLGKK 762

Query: 374 AVNLNSTVGDIGARRLQ----TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSE 429
             +        GAR L+    T++E  L +    A       V++D       I      
Sbjct: 763 GYD-----EVYGARPLRRTIQTMLEDRLSEDLLRAKFEAGDKVIVDTAE-DEIIVRLAEP 816

Query: 430 TDMYH 434
            ++  
Sbjct: 817 AELSQ 821


>gi|288550291|ref|ZP_06390995.1| ATP-dependent chaperone protein ClpB [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315678|gb|EFC54616.1| ATP-dependent chaperone protein ClpB [Enterobacter cancerogenus
           ATCC 35316]
          Length = 861

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 566 MEQDLHHRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 620 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 651


>gi|224369602|ref|YP_002603766.1| ClpB [Desulfobacterium autotrophicum HRM2]
 gi|223692319|gb|ACN15602.1| ClpB [Desulfobacterium autotrophicum HRM2]
          Length = 859

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L++ +IGQ+DA +AV+ A+     R+        +      + +GPTGVGKT +++
Sbjct: 564 MEEALEQRVIGQKDAIKAVSDAV-----RRARSGLKPQDRPIGTFIFMGPTGVGKTELTK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            +A          ++++++++ E   V R
Sbjct: 619 AVAEFIFNTKNAMVRIDMSEYMEKHSVAR 647


>gi|312622269|ref|YP_004023882.1| ATP-dependent chaperone clpb [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202736|gb|ADQ46063.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 864

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L R ++GQ +A  AV  A+       +  A ++D   P    L +GPTGVGKT +
Sbjct: 566 ELDKILHRRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGTFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++T++ E   V R
Sbjct: 620 ARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|307710307|ref|ZP_07646748.1| clpC [Streptococcus mitis SK564]
 gi|307618899|gb|EFN98034.1| clpC [Streptococcus mitis SK564]
          Length = 810

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +V+ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSVSRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|260434470|ref|ZP_05788440.1| ATP-dependent chaperone ClpB [Synechococcus sp. WH 8109]
 gi|260412344|gb|EEX05640.1| ATP-dependent chaperone ClpB [Synechococcus sp. WH 8109]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L + +IGQ  A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +
Sbjct: 566 QLEDDLHQRVIGQHQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           S+ LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 620 SKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRRR 674


>gi|241763391|ref|ZP_04761446.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           delafieldii 2AN]
 gi|241367433|gb|EER61744.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax
           delafieldii 2AN]
          Length = 782

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 28/260 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ  A   +A A++            + +    + L  GPTGVGKT  ++
Sbjct: 458 LERDLKSVVFGQDKALEVLASAVK-----MARSGLGKGDKPIGSFLFSGPTGVGKTEAAK 512

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
           +LA + G   I+ +++++ E            GYVG +   ++ + +    + V     D
Sbjct: 513 QLAYIMGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHAVL--LLD 570

Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180
           E+ E+A  +    +L  +   T T N         R  +  +  I +     +  ++   
Sbjct: 571 EI-EKAHPDIFNVLLQVMDHGTLTDNNG-------RKADFRNVLIIMTTNAGAETMNKAT 622

Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240
           I         +      ++     + ++   V   +  L      R++D   +  ++   
Sbjct: 623 IGFTNPRQAGDEMGDIKRLFTPEFRNRLDAIVN--FKALDEQIILRVVDKFLLQLETQLA 680

Query: 241 VENYGIVFLDEFDKIVARDS 260
            +   + F D   K +A+  
Sbjct: 681 EKKVEVTFTDNLRKHLAKKG 700


>gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 697

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|171920854|ref|ZP_02932019.1| chaperone ClpB [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|188024102|ref|ZP_02996842.1| chaperone ClpB [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518236|ref|ZP_03003770.1| ATP-dependent serine proteinase - heat shock protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524403|ref|ZP_03004425.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867858|ref|ZP_03079857.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273810|ref|ZP_03206344.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554597|ref|YP_002284827.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550792|ref|ZP_03771741.1| chaperone ClpB [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|171903058|gb|EDT49347.1| chaperone ClpB [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|188019151|gb|EDU57191.1| chaperone ClpB [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998013|gb|EDU67110.1| ATP-dependent serine proteinase - heat shock protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195659991|gb|EDX53371.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660435|gb|EDX53693.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249565|gb|EDY74347.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209542098|gb|ACI60327.1| chaperone protein ClpB [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379946|gb|EEH02308.1| chaperone ClpB [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 704

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA 77
           ++IGQ +A + ++ A+       +  A + +   P  + L +GPTGVGKT +++ LA+  
Sbjct: 423 HVIGQDEAVKLISDAV------IRGRAGINNPNQPIGSFLFLGPTGVGKTELAKTLAKEL 476

Query: 78  ---GAPFIKVEVTKFTEIGYVGRNVEQIIRDL-VDVAINIVRESRRDEVR-------EQA 126
                  I+ +++++ E   V + V      +  + A  +    +R           E+A
Sbjct: 477 FDSQKALIRFDMSEYMEKHSVSKLVGAPPGYVGYENAGLLTESVKRKPYSILLFDEIEKA 536

Query: 127 SINAEERILDAL-VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185
             +    +L  L  G    +   E+  K       S+   +  + +  ++          
Sbjct: 537 HPDVLNILLQILDEGSVKDAKNNEINFKNTIIIMTSNVGAEALLENNKTNALMELQKTFK 596

Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245
              +  +SE+          K  +  + K    L+++ SD L   D     SI+  +N  
Sbjct: 597 PEILNRISEII------FFNKLSKEVIFKISENLLKELSDLLAKQDY----SIKFNDNIA 646

Query: 246 IVFLDE 251
            + +DE
Sbjct: 647 KIMVDE 652


>gi|126656761|ref|ZP_01727975.1| ClpB protein [Cyanothece sp. CCY0110]
 gi|126621981|gb|EAZ92689.1| ClpB protein [Cyanothece sp. CCY0110]
          Length = 872

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ++A  AV+ A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 567 QLEDELHERVIGQEEAVTAVSEAI------QRSRAGLADPNRPTASFIFLGPTGVGKTEL 620

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA+         ++++++++ E   V R
Sbjct: 621 AKALAKNLFDTEEAIVRIDMSEYMEKHSVSR 651


>gi|120609936|ref|YP_969614.1| ATPase [Acidovorax citrulli AAC00-1]
 gi|120588400|gb|ABM31840.1| ATPase AAA-2 domain protein [Acidovorax citrulli AAC00-1]
          Length = 869

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A  AVA A+R      +  + L D   P    L +GPTGVGKT +
Sbjct: 565 QMEDKLHERVVGQDEAIAAVANAIR------RSRSGLADPNRPMGSFLFLGPTGVGKTEL 618

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 619 CKALAGFLFDSEEHLVRIDMSEFMEKHSVAR 649


>gi|72388294|ref|XP_844571.1| ATP-dependent zinc metallopeptidase [Trypanosoma brucei TREU927]
 gi|62175363|gb|AAX69506.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei]
 gi|62359685|gb|AAX80117.1| AFG3-like protein 2, putative [Trypanosoma brucei]
 gi|70801104|gb|AAZ11012.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 877

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           ++I G ++AK+ V      LR+  R   L A      +P   LL+GP G GKT +++ +A
Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAK-----VPTGALLLGPPGTGKTLLAKAVA 364

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
             +G  FI V  + F E+ YVG    ++ R L +VA    
Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALRV-RQLFEVAKKQR 402


>gi|325688852|gb|EGD30860.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK115]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|325686698|gb|EGD28724.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK72]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.4 bits (83), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLADKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|324992599|gb|EGC24520.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK405]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|323350649|ref|ZP_08086310.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis VMC66]
 gi|322123069|gb|EFX94760.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis VMC66]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|315126101|ref|YP_004068104.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas sp. SM9913]
 gi|315014615|gb|ADT67953.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Pseudoalteromonas sp. SM9913]
          Length = 858

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 QMEEQLHNKVIGQDEAVVAVANAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA       +  +++++++F E   V R V
Sbjct: 615 TKALAGYMFDTESAMVRIDMSEFMEKHSVARLV 647


>gi|259501964|ref|ZP_05744866.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
 gi|259170141|gb|EEW54636.1| cell division protein FtsH [Lactobacillus antri DSM 16041]
          Length = 706

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +P  +LL GP G GKT +++ +A  +G PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASRV-RDLFDQA 281


>gi|255007974|ref|ZP_05280100.1| endopeptidase Clp ATP-binding chain B [Bacteroides fragilis 3_1_12]
 gi|313145690|ref|ZP_07807883.1| chaperone clpB [Bacteroides fragilis 3_1_12]
 gi|313134457|gb|EFR51817.1| chaperone clpB [Bacteroides fragilis 3_1_12]
          Length = 862

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAIAAVSDAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|238917787|ref|YP_002931304.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238873147|gb|ACR72857.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 622

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLV 107
            +PK ++L GP G GKT +++ +A  AG PF  +  + F E+ +VG     V  +  +  
Sbjct: 195 RIPKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDMFEEAK 253

Query: 108 DVAINIVRESRRDEV 122
             A  I+     D V
Sbjct: 254 KNAPCIIFIDEIDAV 268


>gi|151944758|gb|EDN63017.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
 gi|190405609|gb|EDV08876.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a]
          Length = 897

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 594 EIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 651

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 652 TMLARAVATESHSTFFSISASSLT-SKYLGES-EKLVRALFAIA 693


>gi|125718981|ref|YP_001036114.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           sanguinis SK36]
 gi|125498898|gb|ABN45564.1| ATP-dependent Clp protease, ATP-binding subunit, putative
           [Streptococcus sanguinis SK36]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 38.0 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQTSALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQ----TVMERVLEDISFSASDLQEKTVVI 414
             ++     ++GAR L+    T +E  L ++  +   +  +T+ +
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVEDKLSELLLTGDLMTGQTLKV 797


>gi|308812448|ref|XP_003083531.1| cell division protein (ISS) [Ostreococcus tauri]
 gi|116055412|emb|CAL58080.1| cell division protein (ISS) [Ostreococcus tauri]
          Length = 785

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 48  RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107
           R    PK ILL GP G GKT +++ +A  AG PF     ++F E+ +VG    ++ R+L 
Sbjct: 330 RFVEAPKGILLEGPPGTGKTLLAKAVAGEAGLPFFYANGSEFVEM-FVGVAASRM-RNLF 387

Query: 108 DVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167
                     +R      A I  +E  LD +    A++  R+    + R+  +    +++
Sbjct: 388 ----------KRARTNAPAIIFIDE--LDTIGRSRASNAFRDDSTSE-REQGLMQMLVEM 434

Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227
           +  D         + G  ++       L                  +    +++  + +L
Sbjct: 435 DGFDNKESGEAVLVIGATNLASQLDPALLRSGRFDRVFHIGVPPTAEARMPILQVHARKL 494


>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 837

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 32/261 (12%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++A   +   +    +  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 209 EDIGGLKEAIEKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 267

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQASI---NAE 131
            A FI +   +     Y G + E+   I ++  + A  I+     D +  +        E
Sbjct: 268 NAYFIAINGPEIM-SKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGEVE 326

Query: 132 ERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++  L+               A +N  +     LR     D+EI++ V D        
Sbjct: 327 KRVVSQLLTLMDGLKSRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQGRKEIL 386

Query: 180 DIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I   G  +      E   K +    K++     +        +E  +    + V     
Sbjct: 387 QIHTRGMPIEPDYDKESVIKALKELEKEEKYEKSEIKKII---EEISKATSEEEVK---- 439

Query: 239 QMVENYGIVFLD----EFDKI 255
           ++++ +G +F+D      DK+
Sbjct: 440 EILKKHGKIFMDVRAKLIDKL 460



 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++ K+ +  A+    +  +    L     PK ILL GP G GKT +++ +A  +
Sbjct: 544 DDIGGLEEVKQQLREAVEWPLKYPKAFKRLGI-SPPKGILLYGPPGTGKTLLAKAVATES 602

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
            A FI +   +     +VG +   + +I R     A  I+     D +         ER+
Sbjct: 603 QANFIAIRGPEVL-SKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPARGGYEGERV 661

Query: 135 LDAL 138
            D L
Sbjct: 662 TDRL 665


>gi|330954257|gb|EGH54517.1| AAA ATPase, central region [Pseudomonas syringae Cit 7]
          Length = 793

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 566 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|289674876|ref|ZP_06495766.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae FF5]
          Length = 663

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   +IGQ++A  AV+ A+R      +  A L D   P    + +GPTGVGKT + + LA
Sbjct: 375 LHNRVIGQEEAVVAVSNAVR------RSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALA 428

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 429 EFLFDTEEAMVRIDMSEFMEKHSVAR 454


>gi|239927933|ref|ZP_04684886.1| Clp protease ATP binding subunit [Streptomyces ghanaensis ATCC
           14672]
 gi|291436270|ref|ZP_06575660.1| clp protease ATP binding subunit [Streptomyces ghanaensis ATCC
           14672]
 gi|291339165|gb|EFE66121.1| clp protease ATP binding subunit [Streptomyces ghanaensis ATCC
           14672]
          Length = 844

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A R V+ A+       +  A L     P  + L +GPTGVGKT ++
Sbjct: 532 LEQHLHRRVVGQDEAVRVVSDAV------LRSRAGLASPDRPIGSFLFLGPTGVGKTELA 585

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          ++++++++ E   V R V
Sbjct: 586 RALAEALFGSEDRMVRLDMSEYQERHTVSRLV 617


>gi|208434232|ref|YP_002265898.1| cell division protein [Helicobacter pylori G27]
 gi|208432161|gb|ACI27032.1| cell division protein [Helicobacter pylori G27]
          Length = 527

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 139 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 193

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 194 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 242

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 243 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 302

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 303 ISLPDLLERQSILEKLLENKKHTLNYLKIAKICVGFSGAMLATLINESALNALKHQRNEI 362

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 363 TESDILEVKDKIA 375


>gi|6320887|ref|NP_010966.1| Sap1p [Saccharomyces cerevisiae S288c]
 gi|731461|sp|P39955|SAP1_YEAST RecName: Full=Protein SAP1; AltName: Full=SIN1-associated protein
 gi|603280|gb|AAB64582.1| Yer047cp [Saccharomyces cerevisiae]
 gi|285811674|tpg|DAA07702.1| TPA: Sap1p [Saccharomyces cerevisiae S288c]
          Length = 897

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 594 EIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 651

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 652 TMLARAVATESHSTFFSISASSLT-SKYLGES-EKLVRALFAIA 693


>gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A]
 gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
 gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
          Length = 697

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|319787139|ref|YP_004146614.1| ATP-dependent Clp protease ATP-binding subunit clpA
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465651|gb|ADV27383.1| ATP-dependent Clp protease, ATP-binding subunit clpA
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 760

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   I GQ  A   +A A++              +    N L  GPTGVGKT ++R
Sbjct: 456 LERNLKMVIFGQDPAIETLASAIK-----LARSGLGNPDKPIGNFLFAGPTGVGKTEVTR 510

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LA   G   ++ +++++ E            GYVG +   ++ + +    + 
Sbjct: 511 QLALQLGIELVRFDMSEYMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHC 563


>gi|302392271|ref|YP_003828091.1| vesicle-fusing ATPase [Acetohalobium arabaticum DSM 5501]
 gi|302204348|gb|ADL13026.1| Vesicle-fusing ATPase [Acetohalobium arabaticum DSM 5501]
          Length = 493

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 18/222 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK  +  AL   + R             K I+L GP G GKT +++ +AR  
Sbjct: 68  EDIGGQETAKNELLEALE--FVRDINKVKSLGIRPLKGIMLSGPPGTGKTLMAKAVARHI 125

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + FI    ++F E+ Y G   +++ R+L + A    ++S   + +  A I  +E  ++ 
Sbjct: 126 DSVFISTSGSEFVEM-YAGVGAKRV-RELFEKA----KDSAHKKNKTNAVIFIDE--IEI 177

Query: 138 LVGKTATSNTREVFRKKLRD--GEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSE 194
           L GK   +++   + + L     E+    ID E+       +N  DI   A +       
Sbjct: 178 LGGKRGQNSSHLEYDQTLNQLLVELDGMSIDDEINILVIGATNRIDILDKAILRPGRFDR 237

Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
           +    +     +   + +      L  D     +D++ + ++
Sbjct: 238 IVKVDLPDKDGRHKILEIHTRDKPLAED-----VDLEQIAKE 274


>gi|209881706|ref|XP_002142291.1| AFG3 ATP-dependent protease family protein [Cryptosporidium muris
           RN66]
 gi|209557897|gb|EEA07942.1| AFG3 ATP-dependent protease family protein [Cryptosporidium muris
           RN66]
          Length = 775

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 10  REIVSELD-RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           ++I S +    + G ++AK   +     L+   R + L A +     PK  LLVGP G G
Sbjct: 296 KDIKSNVKFGNVAGMKEAKNEIQEFVDFLKEPKRYEFLGAKI-----PKGALLVGPPGTG 350

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           KT +++ +A  A  PF  +  + F EI +VG    ++ RDL   A
Sbjct: 351 KTLLAKAVAGEANVPFFSISGSDFIEI-FVGIGPSRV-RDLFFQA 393


>gi|294655818|ref|XP_458013.2| DEHA2C07634p [Debaryomyces hansenii CBS767]
 gi|199430630|emb|CAG86073.2| DEHA2C07634p [Debaryomyces hansenii]
          Length = 670

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
           +PK +LL GP G GKT ++R  A  AG PF  +  ++F E+ YVG   ++I        +
Sbjct: 238 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRIRELFGQARE 296

Query: 109 VAINIVRESRRDEV------REQA-SINAEERILDALVGKTATS--------NTREVFRK 153
            +  I+     D +      ++QA +     ++L  L G + TS        N  E   K
Sbjct: 297 KSPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPESLDK 356

Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192
            L      DKE+ +E+ D    I              N+
Sbjct: 357 ALTRPGRFDKEVIVELPDVRGRIDILKNHMENVETAENV 395


>gi|332365652|gb|EGJ43411.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK355]
          Length = 809

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|293977749|ref|YP_003543179.1| ATP-dependent metalloprotease FtsH [Candidatus Sulcia muelleri
           DMIN]
 gi|310946764|sp|D5D8E3|FTSH_SULMD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|292667680|gb|ADE35315.1| ATP-dependent metalloprotease FtsH [Candidatus Sulcia muelleri
           DMIN]
          Length = 619

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G +  K   + +   L++  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 184 KDVAGLEGPKEEIKEIVDFLKSPNKYTKLGGKI-----PKGALLIGPPGTGKTLLAKAVA 238

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL  +A
Sbjct: 239 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFYIA 272


>gi|270290205|ref|ZP_06196431.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304385526|ref|ZP_07367870.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
 gi|270281742|gb|EFA27574.1| cell division protease FtsH [Pediococcus acidilactici 7_4]
 gi|304328030|gb|EFL95252.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284]
          Length = 694

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 276

Query: 111 INI 113
              
Sbjct: 277 KKN 279


>gi|244790112|ref|NP_058658.2| spastin isoform 2 [Mus musculus]
          Length = 613

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 339 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 397 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 427


>gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 838

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 100/264 (37%), Gaps = 22/264 (8%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G  DA + +   +    +  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 211 EDIGGLSDAIQKIREMVELPLKHPELFERLGIE-PPKGVLLYGPPGTGKTLLAKAVANEA 269

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEVREQASI---NAE 131
            A FI +   +     Y G + E+   I ++  + A +I+     D +  +        E
Sbjct: 270 NAHFIAINGPEIMSKFY-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGEVE 328

Query: 132 ERIL-------DALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
           +R++       D L G+      A +N  +     LR     D+EI++ V D        
Sbjct: 329 KRVVSQLLTLMDGLKGRGKVIVIAATNRPDAIDPALRRPGRFDREIEVGVPDKQGRKEIL 388

Query: 180 DIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238
            I   G  +      E    V+     +  + + +      + + +    ++  + + + 
Sbjct: 389 QIHTRGMPLEPSFDKEEVLTVLDRLAGRTDKFAEEVAGIRPLIEAAQSEEEIKGILKKNG 448

Query: 239 QMVENYGIVFLD-EFDKIVARDSG 261
           ++        +D   D+I  R  G
Sbjct: 449 ELYSEVKAKLIDRMLDRIADRTHG 472



 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G +D K+ +  A+    +  +    L     PK ILL GP G GKT +++ +A  +
Sbjct: 546 DDIGGLEDVKQELREAVEWPLKYPKAFERLGI-TPPKGILLYGPPGTGKTLLAKAVANES 604

Query: 78  GAPFIKVEVTKFTEIGYVGR---NVEQIIRDLVDVAINIVRESRRDEV 122
            A FI +   +     +VG     + +I R     A  +V     D +
Sbjct: 605 EANFIAIRGPEVL-SKWVGETEKRIREIFRKARQAAPTVVFIDEIDAI 651


>gi|227894506|ref|ZP_04012311.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
 gi|227863665|gb|EEJ71086.1| M41 family endopeptidase FtsH [Lactobacillus ultunensis DSM 16047]
          Length = 717

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|167587015|ref|ZP_02379403.1| AAA ATPase, ClpB [Burkholderia ubonensis Bu]
          Length = 865

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           I  +L   ++GQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 568 IEEKLHERVVGQNEAIDAVADAIR------RSRAGLADPNRPYGSFLFLGPTGVGKTELC 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 622 KALAAFLFDSEEHLIRIDMSEFMEKHSVAR 651


>gi|168033123|ref|XP_001769066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679700|gb|EDQ66144.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
            P  +LL GP G GKT +++ +A  AG PF ++  ++F E+  VG    +I RDL     
Sbjct: 454 PPHGVLLEGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEV-LVGVGAARI-RDLF---- 507

Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF-----RKKLRDGEISDKEID 166
                 +R +V   + +  +E  +DAL      +   E         + R+  ++   I+
Sbjct: 508 ------KRAKVNRPSVVFIDE--IDALGAMRHGAAGEEGMDTYNAGAQERETTLNQLLIE 559

Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           ++  DT   +           G  N  ++    +    +   +++++
Sbjct: 560 LDGFDTGKGVVFL--------GATNRMDMLDPALLRPGRFDRKVAIR 598


>gi|153208629|ref|ZP_01946886.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212218621|ref|YP_002305408.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuK_Q154]
 gi|120575890|gb|EAX32514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212012883|gb|ACJ20263.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuK_Q154]
          Length = 753

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L R + GQ  A  ++  A++              +    + LL GPTGVGKT ++
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIK-----LSRAGLNNADKPVGSFLLAGPTGVGKTEVT 509

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           R+LA+  G   I+ +++++ E            GYVG +   ++ +++    +
Sbjct: 510 RQLAQALGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEIIRKQPH 562


>gi|123911070|sp|Q05AS3|SPAST_XENTR RecName: Full=Spastin
 gi|116284104|gb|AAI23974.1| spg4 protein [Xenopus (Silurana) tropicalis]
          Length = 603

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  + 
Sbjct: 330 DIAGQDLAKQALQEIVILPSIRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAESN 387

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +     T   YVG   E+++R L  VA
Sbjct: 388 ATFFNISAASLT-SKYVGEG-EKLVRALFSVA 417


>gi|28279482|gb|AAH46286.1| Spastin [Mus musculus]
 gi|148706481|gb|EDL38428.1| spastin, isoform CRA_a [Mus musculus]
          Length = 613

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 339 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 397 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 427


>gi|323337945|gb|EGA79184.1| Sap1p [Saccharomyces cerevisiae Vin13]
          Length = 897

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 594 EIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 651

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 652 TMLARAVATESHSTFFSISASSLT-SKYLGES-EKLVRALFAIA 693


>gi|295106465|emb|CBL04008.1| ATP-dependent chaperone ClpB [Gordonibacter pamelaeae 7-10-1-b]
          Length = 886

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 19/102 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   ++GQ +A  +VA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 571 DLEEKLHERVVGQDEAVSSVAGAI-----RRNRAGLSDPDRPIGSFLFLGPTGVGKTELA 625

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          ++++++++ E            GYVG +
Sbjct: 626 KALAEYLFDSERAMVRIDMSEYMEKFSVQRLIGAPPGYVGYD 667


>gi|291320747|ref|YP_003516012.1| cell division protein FtsH [Mycoplasma agalactiae]
 gi|290753083|emb|CBH41059.1| Cell division protein ftsH homolog [Mycoplasma agalactiae]
          Length = 675

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 18  RYIIGQQDA---KRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + +   L+N  + +   A +     P  ILL GP G GKT +++  A
Sbjct: 199 KDVAGNKEAVEEIKEIVDYLKNPKKYEIAGARM-----PHGILLGGPPGTGKTLLAKATA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
             A  PF  +  + F E+ +VG   +++
Sbjct: 254 GEANVPFYFISASNFVEM-FVGLGAKRV 280


>gi|256271139|gb|EEU06232.1| Sap1p [Saccharomyces cerevisiae JAY291]
          Length = 897

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 594 EIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 651

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 652 TMLARAVATESHSTFFSISASSLT-SKYLGES-EKLVRALFAIA 693


>gi|253577148|ref|ZP_04854468.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843392|gb|EES71420.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 814

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 502 MEKILHERVIGQEEAVKAVSRAIR------RARAGLKDPKRPMGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          I+++++++ E            GYVG
Sbjct: 556 RALAEAMFGDENAVIRIDMSEYMEKHSTARLVGAPPGYVG 595


>gi|244790106|ref|NP_001156342.1| spastin isoform 1 [Mus musculus]
 gi|226694320|sp|Q9QYY8|SPAST_MOUSE RecName: Full=Spastin
          Length = 614

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 340 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 397

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 398 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 428


>gi|255582646|ref|XP_002532103.1| Protein MSP1, putative [Ricinus communis]
 gi|223528225|gb|EEF30282.1| Protein MSP1, putative [Ricinus communis]
          Length = 323

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 9   PREIVSELDRYIIG-QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           P EI  + D   IG  +D K+A+   +    RR +L +        K ILL GP G GKT
Sbjct: 27  PGEIGVKFDD--IGALEDVKKALHELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKT 84

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +++ LA  AGA FI +  +  T   +   + E++ + L   A
Sbjct: 85  LLAKALATEAGANFISITGSTLTSKWFG--DAEKLTKALFSFA 125


>gi|212212414|ref|YP_002303350.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuG_Q212]
 gi|212010824|gb|ACJ18205.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           CbuG_Q212]
          Length = 753

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L R + GQ  A  ++  A++              +    + LL GPTGVGKT ++
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIK-----LSRAGLNNADKPVGSFLLAGPTGVGKTEVT 509

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           R+LA+  G   I+ +++++ E            GYVG +   ++ +++    +
Sbjct: 510 RQLAQALGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEIIRKQPH 562


>gi|281485591|ref|NP_001102172.2| spastin [Rattus norvegicus]
 gi|226694298|sp|B2RYN7|SPAST_RAT RecName: Full=Spastin
 gi|187469086|gb|AAI66846.1| Spast protein [Rattus norvegicus]
          Length = 581

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 307 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 364

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 365 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 395


>gi|254362598|ref|ZP_04978693.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
 gi|153094206|gb|EDN75089.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
          Length = 855

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +S
Sbjct: 561 MEEVLHARVIGQNEAVDAVANAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELS 614

Query: 71  RRLARLA-GAP--FIKVEVTKFTEIGYVGRNV 99
           + LA      P   +++++++F E   V R V
Sbjct: 615 KTLANFLFDDPDAMVRIDMSEFMEKHSVSRLV 646


>gi|161830527|ref|YP_001597058.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 331]
 gi|161762394|gb|ABX78036.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 331]
          Length = 753

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L R + GQ  A  ++  A++              +    + LL GPTGVGKT ++
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIK-----LSRAGLNNADKPVGSFLLAGPTGVGKTEVT 509

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           R+LA+  G   I+ +++++ E            GYVG +   ++ +++    +
Sbjct: 510 RQLAQALGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEIIRKQPH 562


>gi|37360228|dbj|BAC98092.1| mKIAA1083 protein [Mus musculus]
          Length = 614

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 340 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 397

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 398 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 428


>gi|323465809|gb|ADX69496.1| M41 family endopeptidase FtsH [Lactobacillus helveticus H10]
          Length = 726

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 229 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 286

Query: 111 INI 113
              
Sbjct: 287 KKN 289


>gi|309790848|ref|ZP_07685392.1| ATPase [Oscillochloris trichoides DG6]
 gi|308227135|gb|EFO80819.1| ATPase [Oscillochloris trichoides DG6]
          Length = 840

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 85/238 (35%), Gaps = 43/238 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ + L   +IGQQ+A   ++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 513 QMENFLHGRVIGQQEAVVTISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 566

Query: 70  SRRLARL---AGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVR 115
           ++ LA     A    IK+++++F E            GYVG      + D V      V 
Sbjct: 567 AKTLAEFMFGAEESLIKIDMSEFQERHTTSRLVGSPPGYVGYGEGGQLTDAVRRKPYSV- 625

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               DE+ E+A  +A   +L  L     T         K R  +  +  I          
Sbjct: 626 -VLFDEI-EKAHPDAFNLLLQVLEDGHLTDG-------KGRKVDFRNTII---------- 666

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                   G           F        +  +R  V      L R E    ID   +
Sbjct: 667 --IMTSNVGTEHIRRASRIGFGGPANDIDQNDMRRKVDDALKTLFRPEFLNRIDATII 722



 Score = 36.8 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L   +   I       ++ + ++ ++   I +D   D++D LA  
Sbjct: 711 PEFLNRIDATIIFHPLTTEEIHQIT----GIMLKRVQKQLEDHQITIDVRRDALDLLAKR 766

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDL--QEKTVVIDAE 417
             +        GAR L+ ++  ++ED       S        V+ID E
Sbjct: 767 GYD-----PAFGARPLRRIITNLIEDPLAEGLLSGRFQNGDAVIIDTE 809


>gi|260102341|ref|ZP_05752578.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
 gi|260083850|gb|EEW67970.1| cell division protein FtsH [Lactobacillus helveticus DSM 20075]
          Length = 721

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|227878372|ref|ZP_03996327.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256844415|ref|ZP_05549901.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849197|ref|ZP_05554630.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|262047213|ref|ZP_06020171.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|293380362|ref|ZP_06626433.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295692144|ref|YP_003600754.1| cell division protein ftsh [Lactobacillus crispatus ST1]
 gi|312978415|ref|ZP_07790157.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
 gi|227862051|gb|EEJ69615.1| M41 family endopeptidase FtsH [Lactobacillus crispatus JV-V01]
 gi|256613493|gb|EEU18696.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713973|gb|EEU28961.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|260572458|gb|EEX29020.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|290923045|gb|EFD99976.1| ATP-dependent metallopeptidase HflB [Lactobacillus crispatus 214-1]
 gi|295030250|emb|CBL49729.1| Cell division protein FtsH [Lactobacillus crispatus ST1]
 gi|310894758|gb|EFQ43830.1| cell division protein FtsH [Lactobacillus crispatus CTV-05]
          Length = 722

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|226330745|ref|ZP_03806263.1| hypothetical protein PROPEN_04665 [Proteus penneri ATCC 35198]
 gi|225201540|gb|EEG83894.1| hypothetical protein PROPEN_04665 [Proteus penneri ATCC 35198]
          Length = 303

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 16/105 (15%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79
           + GQ  A  A++ +++            +D     + L  GPTGVGKT ++ +LA+    
Sbjct: 3   VFGQDPAIHALSESIK-----MSRAGLGQDNKPVGSFLFAGPTGVGKTEVTVQLAKALNV 57

Query: 80  PFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             ++ +++++ E            GYVG +   ++ D V      
Sbjct: 58  KLLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKNPYS 102


>gi|217967862|ref|YP_002353368.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336961|gb|ACK42754.1| ATPase AAA-2 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 823

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAIS 70
           +  EL + II Q +A R V+ A+R      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 510 MEEELHKRIISQDEAVRVVSRAIR------RSRSGLKDPRRPIGVFMFLGPTGVGKTELA 563

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+ ++++F E   V R
Sbjct: 564 RALAEYLFGNENALIRFDMSEFMEKHTVSR 593


>gi|156037688|ref|XP_001586571.1| hypothetical protein SS1G_12558 [Sclerotinia sclerotiorum 1980]
 gi|154697966|gb|EDN97704.1| hypothetical protein SS1G_12558 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 943

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 20/111 (18%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ S L + ++GQ +A +AV+ A+R         A L +   P + L  GP+G GKT ++
Sbjct: 598 KMESALGKIVVGQSEAVKAVSNAIR------LQRAGLSNPNSPPSFLFCGPSGTGKTLLT 651

Query: 71  RRLARLA---GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           + LA          I+++++++ E            GYVG +    + + +
Sbjct: 652 KALADFLFDDEKAMIRLDMSEYQERHALSRMIGAPPGYVGHDAGGQLTEAL 702


>gi|111610207|gb|ABH11595.1| cell division protein [Lactobacillus helveticus CNRZ32]
 gi|328463466|gb|EGF35117.1| cell division protein [Lactobacillus helveticus MTCC 5463]
          Length = 721

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|148652347|ref|YP_001279440.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. PRwf-1]
 gi|148571431|gb|ABQ93490.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. PRwf-1]
          Length = 627

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 187 IPRGILMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKK 245

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 246 NAPCIIFIDEIDAV 259


>gi|73980099|ref|XP_850973.1| PREDICTED: similar to spastin isoform 1 isoform 1 [Canis
           familiaris]
          Length = 624

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 350 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 407

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 408 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 438


>gi|29654499|ref|NP_820191.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 493]
 gi|154707649|ref|YP_001424640.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165919022|ref|ZP_02219108.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 334]
 gi|29541766|gb|AAO90705.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           RSA 493]
 gi|154356935|gb|ABS78397.1| ATP-dependent clp protease ATP-binding subunit [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917277|gb|EDR35881.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella
           burnetii RSA 334]
          Length = 753

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L R + GQ  A  ++  A++              +    + LL GPTGVGKT ++
Sbjct: 455 DLPKQLKRVVFGQSQAVESLCNAIK-----LSRAGLNNADKPVGSFLLAGPTGVGKTEVT 509

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           R+LA+  G   I+ +++++ E            GYVG +   ++ +++    +
Sbjct: 510 RQLAQALGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEIIRKQPH 562


>gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
          Length = 697

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 247 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 304

Query: 111 INI 113
              
Sbjct: 305 KKN 307


>gi|296089089|emb|CBI38792.3| unnamed protein product [Vitis vinifera]
          Length = 491

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G + AK+A+   +    +R+ L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 220 DDVAGLEKAKQALLEMVILPTKRKDLFTGLRRP--ARGLLLFGPPGNGKTMLAKAVASES 277

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
            A F  V  +  T   +VG   E+++R L  VAI+  
Sbjct: 278 AATFFNVSASSLT-SKWVGEG-EKLVRTLFMVAISRQ 312


>gi|262274510|ref|ZP_06052321.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Grimontia
           hollisae CIP 101886]
 gi|262221073|gb|EEY72387.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Grimontia
           hollisae CIP 101886]
          Length = 753

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  +L   + GQ DA  A+  A++             +     + L  GPTGVGKT ++ 
Sbjct: 454 LEQKLKMLVFGQDDAISALCEAIK-----LSRAGLGAENKPVGSFLFAGPTGVGKTEVTV 508

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           +LAR  G    + +++++ E            GYVG +   ++ D V    + 
Sbjct: 509 QLARALGIELQRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHC 561


>gi|207345974|gb|EDZ72614.1| YER047Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 897

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 11  EIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66
           EIV   D      I G + AK ++  A+   + R  L   LR+ +  + +LL GP G GK
Sbjct: 594 EIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPV--RGMLLFGPPGTGK 651

Query: 67  TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           T ++R +A  + + F  +  +  T   Y+G + E+++R L  +A
Sbjct: 652 TMLARAVATESHSTFFSISASSLT-SKYLGES-EKLVRALFAIA 693


>gi|110833340|ref|YP_692199.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Alcanivorax
           borkumensis SK2]
 gi|110646451|emb|CAL15927.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Alcanivorax
           borkumensis SK2]
          Length = 865

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 565 MEDALHDRVVGQNEAVEAVANAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 619 KALANFLFDTEEAMVRIDMSEFMEKHSVARLV 650


>gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
 gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
          Length = 696

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 247 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 304

Query: 111 INI 113
              
Sbjct: 305 KKN 307


>gi|318077308|ref|ZP_07984640.1| chaperone [Streptomyces sp. SA3_actF]
          Length = 806

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   ++GQ++A  AVA A+     R+        +    + L +GPTGVGKT ++
Sbjct: 502 KLEEALHSRVVGQEEAVTAVAQAV-----RRNRAGMGDPDRPVGSFLFLGPTGVGKTELA 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA L        ++ ++++F E   V R V
Sbjct: 557 KALAELLFGDENRMVRFDMSEFQEKHTVSRLV 588


>gi|307721647|ref|YP_003892787.1| membrane protease FtsH catalytic subunit [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979740|gb|ADN09775.1| membrane protease FtsH catalytic subunit [Sulfurimonas autotrophica
           DSM 16294]
          Length = 660

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LLVG  G GKT +++ +A  A  PF  V  + F E+ +VG    ++ RDL + A 
Sbjct: 208 IPKGVLLVGSPGTGKTLLAKAVAGEAEVPFFSVSGSSFIEM-FVGVGAARV-RDLFEQAK 265

Query: 112 NIVRE-SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                    DE+       A      A           +   + L + +    +  + + 
Sbjct: 266 KDAPSIIFIDEIDAIGKSRA------AGGPMGGNDEREQTLNQLLAEMDGFGTDTPVIIL 319

Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
             ++     D P     G  +   L  K    GR K +++ V+         + D+ +D+
Sbjct: 320 AATNRPEILD-PALLRPGRFDRQVLVDKPDFEGRVKILKVHVK-------NVKIDKDVDL 371

Query: 231 DTVHR 235
             + R
Sbjct: 372 KEIAR 376


>gi|298249049|ref|ZP_06972853.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
 gi|297547053|gb|EFH80920.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
          Length = 872

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ+ A +AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 564 MEDRLRKRVVGQEQALQAVSDAIR------RARAGLQDPNRPLASFLFLGPTGVGKTELA 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 618 RALAEFLFDDEHAIIRIDMSEYMERHSVAR 647


>gi|227534738|ref|ZP_03964787.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|301066806|ref|YP_003788829.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|227187494|gb|EEI67561.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|300439213|gb|ADK18979.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactobacillus casei str. Zhang]
          Length = 741

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 433 KNLAGDLEKHVIGQNEAVDKVARAIR--RNRIGFNKSGR---PIGSFLFVGPTGVGKTEL 487

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 488 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 547

Query: 115 RESRRDE 121
                ++
Sbjct: 548 LLDEIEK 554



 Score = 39.1 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 48/333 (14%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQ------ASINAEERI-LDALVGKTATSNTRE 149
            ++ +   +L +  I  V E   +++ E+        + A+E+  L  L G        +
Sbjct: 387 EDMAKKQSNLPENEIPTVTEKDMEQIVEEKTNIPVGELKAQEQAQLKNLAGDLEKHVIGQ 446

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              + +     + +   I    +   I +F   G   VG   L++  +K +       IR
Sbjct: 447 N--EAVDKVARAIRRNRIGFNKSGRPIGSFLFVGPTGVGKTELAKQLAKELFGSEDAMIR 504

Query: 210 MSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK------- 254
             + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K       
Sbjct: 505 FDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAHPDVMN 561

Query: 255 --IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD- 311
             +   D G         V      ++  S+  +     N      ++     V      
Sbjct: 562 MFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGAALSGKTHSVLDQLGN 621

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILDFTEDS 366
              PE   RF   V  KSL+K D   I++    DT +N+  Q        G+ +  T+  
Sbjct: 622 YFKPEFLNRFDDIVEFKSLSKDDLLKIVSLMIQDTNNNIKDQ--------GLTIHVTDPV 673

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            + L ++          +GAR L+ V++  +ED
Sbjct: 674 KEKLVNLGY-----NPAMGARPLRRVIQEQIED 701


>gi|241855541|ref|XP_002416029.1| paraplegin, putative [Ixodes scapularis]
 gi|215510243|gb|EEC19696.1| paraplegin, putative [Ixodes scapularis]
          Length = 680

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 18  RYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + + G Q+AK+ +   +     +R +    L  ++ PK +LL+GP G GKT +++ +A  
Sbjct: 214 KDVAGLQEAKQEIVEFIDYL--KRPERYTRLGAKV-PKGVLLLGPPGCGKTMLAKAVATE 270

Query: 77  AGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASINAE 131
           A  PF+ +  ++F E+  G     V  + ++    +  IV     D + R ++++ AE
Sbjct: 271 ASVPFLAMAGSEFIEMIGGLGAARVRDLFKEARKRSPCIVYIDEIDAIGRRRSNLGAE 328


>gi|113953212|ref|YP_730528.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
 gi|113880563|gb|ABI45521.1| cell division protein FtsH4 [Synechococcus sp. CC9311]
          Length = 620

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 9   PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68
           P++ ++     + G  +AK  +   +    ++ +    L   + P+ +LLVGP G GKT 
Sbjct: 149 PQDEITVRFEDVAGISEAKEELQEVV-TFLKQPESFIRLGARI-PRGVLLVGPPGTGKTL 206

Query: 69  ISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
           +++ +A  A  PF  +  ++F E+ +VG     V  + R   + +  I+     D V
Sbjct: 207 LAKAIAGEAEVPFFSIAASEFVEL-FVGVGASRVRDLFRKAKEKSPCIIFIDEIDAV 262


>gi|94496967|ref|ZP_01303541.1| ATP-dependent metalloprotease FtsH [Sphingomonas sp. SKA58]
 gi|94423643|gb|EAT08670.1| ATP-dependent metalloprotease FtsH [Sphingomonas sp. SKA58]
          Length = 650

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      L++  +  +L   +     PK  LLVG  G GKT ++R +A
Sbjct: 166 DDVAGIDEAREELQEIVEFLKDPSKFARLGGKI-----PKGALLVGSPGTGKTLLARAIA 220

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 221 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 270


>gi|325695376|gb|EGD37276.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK150]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|332653965|ref|ZP_08419709.1| Clp protease, ATP-binding subunit ClpC [Ruminococcaceae bacterium
           D16]
 gi|332517051|gb|EGJ46656.1| Clp protease, ATP-binding subunit ClpC [Ruminococcaceae bacterium
           D16]
          Length = 768

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 20/102 (19%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L ++IIGQ +A +AV  A+R      +    +  +  P + + VG TGVGKT + 
Sbjct: 470 KLEERLKKHIIGQDEAVKAVVAAIR------RGRVGISPKHKPVSFIFVGSTGVGKTELV 523

Query: 71  RRLAR-LAGAP--FIKVEVTKFTEI-----------GYVGRN 98
           ++LA+ L  AP   I++++++F E            GYVG +
Sbjct: 524 KQLAQDLFHAPESLIRLDMSEFMEKYAVSRIIGSPPGYVGYD 565



 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 23/171 (13%)

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQ--RDLLPLVEGSSVSTKYGSI 291
            Y +V  DE +K         +   D G+        V     ++ +   +  ++K GS+
Sbjct: 578 PYSVVLFDEIEKAHPDVLNILLQILDDGHITDAHGRKVNFENTVIIMTSNAGSNSKVGSV 637

Query: 292 NTDHILFIASGAFHVSRPADLL-PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ-Y 349
             D           +    D L PE   R    V+   L + +F+ I     + L+LQ  
Sbjct: 638 GFDRTAEEQGKERAMKALQDFLRPEFINRVDEIVYFHQLTEDNFKDI-----AALMLQEL 692

Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
           K+ +  + I L + E  +  L        S     GAR L+  +++ LED+
Sbjct: 693 KDSLAEKHITLTWDESLLSYLVK-----KSYSAAYGARNLRRCIQKELEDV 738


>gi|297537752|ref|YP_003673521.1| ATP-dependent chaperone ClpB [Methylotenera sp. 301]
 gi|297257099|gb|ADI28944.1| ATP-dependent chaperone ClpB [Methylotenera sp. 301]
          Length = 863

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L   ++GQ +A R V+ A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 566 METKLHERVVGQDEAVRLVSDAIR------RSRSGLGDPNRPYGSFLFLGPTGVGKTELC 619

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          I++++++F E   V R
Sbjct: 620 KALAGFLFDSEDHLIRIDMSEFMEKHSVAR 649


>gi|226694318|sp|Q719N1|SPAST_PIG RecName: Full=Spastin
          Length = 613

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 339 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 397 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 427


>gi|224135269|ref|XP_002322025.1| predicted protein [Populus trichocarpa]
 gi|222869021|gb|EEF06152.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  DAK     V   L+N  +  +L   L     PK ILL G  G GKT +++ +A
Sbjct: 2   KDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKL-----PKGILLTGAPGTGKTLLAKAIA 56

Query: 75  RLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVDVAINIVRESRRDEV 122
             AG PF     ++F E+ +VG   R V  + +     A  I+     D V
Sbjct: 57  GEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 106


>gi|270307500|ref|YP_003329558.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. VS]
 gi|270153392|gb|ACZ61230.1| ATP-dependent Clp protease, ATP-binding subunit [Dehalococcoides
           sp. VS]
          Length = 824

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   IIGQ++A   ++ A+R      +  A L+D   P  N + +GPTGVGKT ++
Sbjct: 504 MEEALHERIIGQEEAIVTISKAVR------RARAGLKDPRHPIGNFVFLGPTGVGKTELA 557

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           R LA+         +++++++F E            GYVG +
Sbjct: 558 RALAQFMFGSEDALVRLDMSEFMEKFAVSRLVGAPPGYVGYD 599



 Score = 38.4 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    V   SLNK   R I+     ++I Q    M  +GI L+ TE + D L   
Sbjct: 707 PEFLNRIDSVVVFHSLNKEQIRSIVDLMLKSVIKQ----MSEKGIGLEVTESAKDLLGKK 762

Query: 374 AVNLNSTVGDIGARRLQ----TVMERVLEDISFSASDLQEKTVVID 415
             +        GAR L+    T++E  L +    A       V++D
Sbjct: 763 GYD-----EVYGARPLRRTIQTMIEDRLSEDLLRAKFKAGDKVIVD 803


>gi|332365230|gb|EGJ42993.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1059]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|327463506|gb|EGF09825.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK1057]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|325697317|gb|EGD39203.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK160]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|323971463|gb|EGB66699.1| ATP-dependent chaperone ClpB [Escherichia coli TA007]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 514 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 567

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 568 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 599


>gi|266619765|ref|ZP_06112700.1| ATP-dependent Clp proteinase [Clostridium hathewayi DSM 13479]
 gi|288868669|gb|EFD00968.1| ATP-dependent Clp proteinase [Clostridium hathewayi DSM 13479]
          Length = 772

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL   + GQ +A   +  A++             +     ++L VGPTGVGKT +++
Sbjct: 479 LERELKGRVFGQDEAVDQLTNAIK-----LAKAGLNEENKPVSSLLFVGPTGVGKTELAK 533

Query: 72  RLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             A++ G   ++ +++++ E            GYVG     ++ + +    + 
Sbjct: 534 SAAKVLGIRLVRFDMSEYAEKHTVAKLIGSPAGYVGYEEGGLLTEAIRKNPHC 586


>gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 247 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 304

Query: 111 INI 113
              
Sbjct: 305 KKN 307


>gi|226939298|ref|YP_002794369.1| ClpA [Laribacter hongkongensis HLHK9]
 gi|226714222|gb|ACO73360.1| ClpA [Laribacter hongkongensis HLHK9]
          Length = 776

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+A A++              +    + L  GPTGVGKT +
Sbjct: 463 KTLERDLKNVVFGQDPAIEALAAAIK-----MARSGLGNPQKPIGSFLFSGPTGVGKTEV 517

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +R+LA   G   I+ +++++ E   V R
Sbjct: 518 ARQLAYTLGIELIRFDMSEYMERHAVSR 545


>gi|225011525|ref|ZP_03701963.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-2A]
 gi|225004028|gb|EEG42000.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-2A]
          Length = 651

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 13  VSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           V    + + G + AK  +      L+N  +   L   +     PK  LLVG  G GKT +
Sbjct: 190 VKTTFKDVAGLEGAKEEIQEIVDFLKNPNKYTVLGGKI-----PKGALLVGLPGTGKTLL 244

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 245 AKAVAGEAKVPFYSLSGSDFVEM-FVGVGASRV-RDLFKQA 283


>gi|170017771|ref|YP_001728690.1| membrane ATPase FtsH [Leuconostoc citreum KM20]
 gi|169804628|gb|ACA83246.1| Membrane ATPase FtsH [Leuconostoc citreum KM20]
          Length = 696

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     PK +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVEFLKSPKKFVNLGARI-----PKGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 243 EASVPFFSMSGSDFVEM-FVGVGASRV-RDLFENA 275


>gi|148378007|ref|YP_001256883.1| cell division protein ftsH-like protein [Mycoplasma agalactiae PG2]
 gi|148292053|emb|CAL59445.1| Cell division protein ftsH homolog [Mycoplasma agalactiae PG2]
          Length = 675

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 18  RYIIGQQDA---KRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++A    + +   L+N  + +   A +     P  ILL GP G GKT +++  A
Sbjct: 199 KDVAGNKEAVEEIKEIVDYLKNPKKYEIAGARM-----PHGILLGGPPGTGKTLLAKATA 253

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQI 102
             A  PF  +  + F E+ +VG   +++
Sbjct: 254 GEANVPFYFISASNFVEM-FVGLGAKRV 280


>gi|308806005|ref|XP_003080314.1| AAA ATPase, central region:Clp, N terminal:C (ISS) [Ostreococcus
           tauri]
 gi|116058774|emb|CAL54481.1| AAA ATPase, central region:Clp, N terminal:C (ISS) [Ostreococcus
           tauri]
          Length = 839

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
            EL + +IGQ +A R+++ A+     R+             +I+  GPTGVGKT +++ +
Sbjct: 489 QELGKRVIGQAEAVRSISQAI-----RRARAGLADASKPVASIIFSGPTGVGKTELAKAV 543

Query: 74  ARL---AGAPFIKVEVTKFTEIGYVGR 97
           A+    A    ++++++++ E   V R
Sbjct: 544 AQTYFGAEKAMVRIDMSEYMESHSVSR 570


>gi|110591249|pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591250|pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591251|pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591252|pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591253|pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591254|pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
          Length = 499

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 30  VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89
           +   L+N  R  ++ A +     PK +LLVGP GVGKT ++R +A  A  PFI    + F
Sbjct: 46  IVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100

Query: 90  TEIGYVGRNVEQIIRDLVDVAINI 113
            E+ +VG    ++ RDL + A   
Sbjct: 101 VEM-FVGVGAARV-RDLFETAKRH 122


>gi|15679029|ref|NP_276146.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3334301|sp|O27092|PRS2_METTH RecName: Full=Putative 26S protease regulatory subunit homolog
           MTH_1011
 gi|2622113|gb|AAB85507.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 372

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IGQ+DAK    I  R   +  + P   RD   P+N+L  G  G GKT +++ LA   
Sbjct: 127 DDVIGQEDAK----IKCRIIMKYLEDPDRFRD-WAPRNVLFHGSPGTGKTMLAKSLANEL 181

Query: 78  GAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
             P   ++ T      +G   R + ++       A +++     D +
Sbjct: 182 KVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAI 228


>gi|332227159|ref|XP_003262759.1| PREDICTED: spastin isoform 2 [Nomascus leucogenys]
          Length = 584

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 310 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 367

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 368 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 398


>gi|327472148|gb|EGF17585.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK408]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598


>gi|327467887|gb|EGF13377.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis SK330]
          Length = 809

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ +A  A++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDEAISAISRAI-----RRNQSGIRSSKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA       +  I+ +++++ E            GYVG
Sbjct: 560 ALAESLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +GI L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSAEDMQEVVK----VMVKPLIASLAEKGIELKFQASALKLLAQE 757

Query: 374 AVNLNSTVGDIGARRLQTVMERVLED 399
             ++     ++GAR L+  ++  +ED
Sbjct: 758 GYDV-----EMGARPLRRTLQTQVED 778


>gi|317177101|dbj|BAJ54890.1| cell division protein [Helicobacter pylori F16]
          Length = 550

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q +E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHVLNYLKIAKICVGFSGAMLATLINESALNALKHQRIEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 TESDILEVKDKIA 398


>gi|256784957|ref|ZP_05523388.1| cell division protein FtsH-like protein [Streptomyces lividans
           TK24]
 gi|289768848|ref|ZP_06528226.1| cell division protein [Streptomyces lividans TK24]
 gi|289699047|gb|EFD66476.1| cell division protein [Streptomyces lividans TK24]
          Length = 648

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 30  VAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           V   L+N   +RR           MP+ +LL GP G GKT ++R +A  AG PF     +
Sbjct: 218 VVDFLKNPDAYRRMGA-------KMPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASAS 270

Query: 88  KFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +F E  +G     V ++  +   VA +I+     D +
Sbjct: 271 EFIEMIVGVGASRVRELFAEARKVAPSIIFIDEIDTI 307


>gi|225857764|ref|YP_002739275.1| chaperone ClpB 1 [Streptococcus pneumoniae P1031]
 gi|225726282|gb|ACO22134.1| chaperone ClpB 1 [Streptococcus pneumoniae P1031]
          Length = 810

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|40806170|ref|NP_955468.1| spastin isoform 2 [Homo sapiens]
 gi|114576881|ref|XP_515388.2| PREDICTED: spastin isoform 2 [Pan troglodytes]
 gi|5689503|dbj|BAA83035.1| KIAA1083 protein [Homo sapiens]
 gi|119620867|gb|EAX00462.1| spastin, isoform CRA_b [Homo sapiens]
 gi|152012808|gb|AAI50261.1| Spastin [Homo sapiens]
 gi|168269668|dbj|BAG09961.1| spastin [synthetic construct]
 gi|311348859|gb|ADP91575.1| spastin [Homo sapiens]
 gi|311348862|gb|ADP91577.1| spastin [Homo sapiens]
 gi|311348865|gb|ADP91579.1| spastin [Homo sapiens]
 gi|311348868|gb|ADP91581.1| spastin [Homo sapiens]
 gi|311348871|gb|ADP91583.1| spastin [Homo sapiens]
 gi|311348874|gb|ADP91585.1| spastin [Homo sapiens]
 gi|311348877|gb|ADP91587.1| spastin [Homo sapiens]
 gi|311348880|gb|ADP91589.1| spastin [Homo sapiens]
 gi|311348883|gb|ADP91591.1| spastin [Homo sapiens]
 gi|311348886|gb|ADP91593.1| spastin [Homo sapiens]
 gi|311348889|gb|ADP91595.1| spastin [Homo sapiens]
 gi|311348892|gb|ADP91597.1| spastin [Homo sapiens]
 gi|311348895|gb|ADP91599.1| spastin [Homo sapiens]
 gi|311348898|gb|ADP91601.1| spastin [Homo sapiens]
 gi|311348901|gb|ADP91603.1| spastin [Homo sapiens]
 gi|311348904|gb|ADP91605.1| spastin [Homo sapiens]
 gi|311348907|gb|ADP91607.1| spastin [Homo sapiens]
 gi|311348910|gb|ADP91609.1| spastin [Homo sapiens]
 gi|311348913|gb|ADP91611.1| spastin [Homo sapiens]
 gi|311348916|gb|ADP91613.1| spastin [Homo sapiens]
 gi|311348919|gb|ADP91615.1| spastin [Homo sapiens]
 gi|311348922|gb|ADP91617.1| spastin [Homo sapiens]
 gi|311348925|gb|ADP91619.1| spastin [Homo sapiens]
 gi|311348928|gb|ADP91621.1| spastin [Homo sapiens]
 gi|311348931|gb|ADP91623.1| spastin [Homo sapiens]
 gi|311348934|gb|ADP91625.1| spastin [Homo sapiens]
 gi|311348937|gb|ADP91627.1| spastin [Homo sapiens]
 gi|311348940|gb|ADP91629.1| spastin [Homo sapiens]
 gi|311348943|gb|ADP91631.1| spastin [Homo sapiens]
 gi|311348946|gb|ADP91633.1| spastin [Homo sapiens]
 gi|311348949|gb|ADP91635.1| spastin [Homo sapiens]
 gi|311348952|gb|ADP91637.1| spastin [Homo sapiens]
 gi|311348955|gb|ADP91639.1| spastin [Homo sapiens]
 gi|311348958|gb|ADP91641.1| spastin [Homo sapiens]
 gi|311348961|gb|ADP91643.1| spastin [Homo sapiens]
 gi|311348964|gb|ADP91645.1| spastin [Homo sapiens]
 gi|311348967|gb|ADP91647.1| spastin [Homo sapiens]
 gi|311348970|gb|ADP91649.1| spastin [Homo sapiens]
 gi|311348973|gb|ADP91651.1| spastin [Homo sapiens]
 gi|311348976|gb|ADP91653.1| spastin [Homo sapiens]
          Length = 584

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 310 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 367

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 368 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 398


>gi|21223942|ref|NP_629721.1| cell division protein FtsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|3191980|emb|CAA19379.1| cell division protein FtsH homolog [Streptomyces coelicolor A3(2)]
          Length = 648

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 30  VAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87
           V   L+N   +RR           MP+ +LL GP G GKT ++R +A  AG PF     +
Sbjct: 218 VVDFLKNPDAYRRMGA-------KMPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASAS 270

Query: 88  KFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
           +F E  +G     V ++  +   VA +I+     D +
Sbjct: 271 EFIEMIVGVGASRVRELFAEARKVAPSIIFIDEIDTI 307


>gi|297171552|gb|ADI22550.1| hypothetical protein [uncultured Oceanospirillales bacterium
           HF0500_09M11]
          Length = 861

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + 
Sbjct: 565 MEEALHARVVGQDEAVTAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELC 618

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 619 KALAGFLFDTEEAMVRIDMSEFMEKHSVAR 648


>gi|315649734|ref|ZP_07902818.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
 gi|315274922|gb|EFU38298.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
          Length = 818

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 502 LEEILHSRVIGQEEAVKAVSRAVR------RARAGLKDPKRPMGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          ++++++++ E            GYVG
Sbjct: 556 RALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVG 595


>gi|297379508|gb|ADI34395.1| cell division protein (ftsH) [Helicobacter pylori v225d]
          Length = 550

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLKNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +     +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLSERQSILEKLLENKKHTLNYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q +E      L+  DKI 
Sbjct: 379 KHQRIEITESDILEVKDKIA 398


>gi|255074649|ref|XP_002500999.1| chaperone, Hsp100 family, clpb-type [Micromonas sp. RCC299]
 gi|226516262|gb|ACO62257.1| chaperone, Hsp100 family, clpb-type [Micromonas sp. RCC299]
          Length = 963

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
           +EL + ++GQ  A +AV  A+      Q+  A L D   P  + + +GPTGVGKT +++ 
Sbjct: 633 AELHKRVVGQDLAVQAVTEAI------QRSRAGLSDPNRPIASFMFLGPTGVGKTELAKT 686

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGR 97
           LA          ++++++++ E   V R
Sbjct: 687 LATFLFNTEEAMVRIDMSEYMEKHAVSR 714


>gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 697

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|109107821|ref|XP_001114862.1| PREDICTED: caseinolytic peptidase B protein homolog isoform 2
           [Macaca mulatta]
          Length = 707

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ+ A   V  A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIR------RKENGWYDEEHPLVFLFLGSSGIGKTELAK 392

Query: 72  RLARLAGAP----FIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + A+         FI++++++F E            GYVG      +   +    N
Sbjct: 393 QTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPN 448


>gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1]
 gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1]
          Length = 372

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 11  EIV-SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           EI    +   +IGQ+ AK+   +       R     +   +  P+NIL  GP+G GKT +
Sbjct: 115 EIKGDVIFEDVIGQELAKQKCRLI-----ERFLEEPERFGKWAPRNILFFGPSGTGKTML 169

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           ++ LA     P I V+ T+     YVG    QI   L D A
Sbjct: 170 AKALANKTDVPLIPVKATQLIGE-YVGDGARQI-HQLYDRA 208


>gi|331267290|ref|YP_004326920.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           oralis Uo5]
 gi|326683962|emb|CBZ01580.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           oralis Uo5]
          Length = 810

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAANRLNGAPPGYVG 599


>gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 697

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|289168872|ref|YP_003447141.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           mitis B6]
 gi|288908439|emb|CBJ23281.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           mitis B6]
          Length = 810

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|261867258|ref|YP_003255180.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412590|gb|ACX81961.1| ATP-dependent chaperone ClpB [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 856

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEFLHKRVIGQNEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALASFLFDSEDAMMRIDMSEFMEKHSVSRLV 647


>gi|194378588|dbj|BAG63459.1| unnamed protein product [Homo sapiens]
          Length = 662

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ+ A   V  A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 294 LEQRLKEHIIGQESAIATVGAAIR------RKENGWYDEEHPLVFLFLGSSGIGKTELAK 347

Query: 72  RLARLAGAP----FIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + A+         FI+++++KF E            GYVG      +   +    N
Sbjct: 348 QTAKYMHKDAKKGFIRLDMSKFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPN 403


>gi|194220831|ref|XP_001918126.1| PREDICTED: similar to spastin [Equus caballus]
          Length = 616

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 342 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 399

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 400 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 430


>gi|168486303|ref|ZP_02710811.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC1087-00]
 gi|183570676|gb|EDT91204.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC1087-00]
          Length = 810

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|163783011|ref|ZP_02178006.1| ATP-dependent Clp protease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881691|gb|EDP75200.1| ATP-dependent Clp protease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 813

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           I  EL + ++GQ DA +A+A A+R    R  L    R        L +GPTGVGKT  ++
Sbjct: 495 IEDELKKRVVGQDDAIKAIAKAIR--RSRVGLKGKHR---PIGVFLFLGPTGVGKTETAK 549

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            LA          I+ +++++ E   V R
Sbjct: 550 ALAEYLFGTEEALIRFDMSEYMEKHTVSR 578


>gi|15904041|ref|NP_359591.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae R6]
 gi|15459704|gb|AAL00802.1| Class III stress response-related ATPase, truncation [Streptococcus
           pneumoniae R6]
          Length = 762

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|85059080|ref|YP_454782.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis
           glossinidius str. 'morsitans']
 gi|84779600|dbj|BAE74377.1| ATP-dependent Clp protease ATP-binding component [Sodalis
           glossinidius str. 'morsitans']
          Length = 757

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +   L   + GQ  A   +  A++            ++     + L  GPTGVGKT +
Sbjct: 448 KNLGDRLKMLVFGQDKAIEVLTEAIK-----MSRAGLGQEHKPVGSFLFAGPTGVGKTEV 502

Query: 70  SRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
           + +LA+      ++ +++++ E            GYVG +   ++ D V
Sbjct: 503 TVQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAV 551


>gi|17554264|ref|NP_499298.1| YME1-Like (Yeast Mitochondrial Escape) AAA protease family member
           (ymel-1) [Caenorhabditis elegans]
          Length = 676

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           YI    +AK     +   L++  +  +L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 202 YIFLMDEAKLEVEEIVDYLKDPEKYSRLGGRL-----PKGVLLVGPPGTGKTLLARAIAG 256

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF     ++F E+  VG+   ++ RDL D A
Sbjct: 257 EAQVPFFHTAGSEFDEV-LVGQGARRV-RDLFDKA 289


>gi|329929240|ref|ZP_08282999.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
           sp. HGF5]
 gi|328936799|gb|EGG33238.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
           sp. HGF5]
          Length = 818

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 502 LEEILHSRVIGQEEAVKAVSRAVR------RARAGLKDPKRPMGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          ++++++++ E            GYVG
Sbjct: 556 RALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVG 595


>gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
 gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
          Length = 626

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            I G  +AK     +   L+   R   + A +     PK +LLVGP G GKT +++ +A 
Sbjct: 183 DIAGIDEAKAEFEEIVSFLKEPERYTLVGAKI-----PKGVLLVGPPGTGKTLLAKAIAN 237

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  V  ++F E+ ++G    +I RDL   A
Sbjct: 238 EANVPFYSVAGSEFVEM-FIGIGAARI-RDLFKKA 270


>gi|327382794|gb|AEA54270.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
           casei LC2W]
 gi|327385981|gb|AEA57455.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
           casei BD-II]
          Length = 741

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L++++IGQ +A   VA A+R    R       R      + L VGPTGVGKT +
Sbjct: 433 KNLAGDLEKHVIGQNEAVDKVARAIR--RNRIGFNKSGR---PIGSFLFVGPTGVGKTEL 487

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIV 114
           +++LA+         I+ +++++ E            GYVG     Q+   +     +++
Sbjct: 488 AKQLAKELFGSEDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLI 547

Query: 115 RESRRDE 121
                ++
Sbjct: 548 LLDEIEK 554



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 117/333 (35%), Gaps = 48/333 (14%)

Query: 97  RNVEQIIRDLVDVAINIVRESRRDEVREQ------ASINAEERI-LDALVGKTATSNTRE 149
            ++ +    L +  I  V E   +++ E+        + A+E+  L  L G        +
Sbjct: 387 EDMAKKQSTLPENEIPTVTEKDMEQIVEEKTNIPVGELKAQEQAQLKNLAGDLEKHVIGQ 446

Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209
              + +     + +   I    +   I +F   G   VG   L++  +K +       IR
Sbjct: 447 N--EAVDKVARAIRRNRIGFNKSGRPIGSFLFVGPTGVGKTELAKQLAKELFGSEDAMIR 504

Query: 210 MSVQKCYPELMRDESDRLIDM---DTVHRDSIQMVE-----NYGIVFLDEFDK------- 254
             + +    + +    +LI        + ++ Q+ E      Y ++ LDE +K       
Sbjct: 505 FDMSE---YMEKFSVSKLIGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAHPDVMN 561

Query: 255 --IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPAD- 311
             +   D G         V      ++  S+  +     N      ++     V      
Sbjct: 562 MFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSTDAEANVGFGAALSGKTHSVLDQLGN 621

Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILT----DTESNLILQYKELMKTEGIILDFTEDS 366
              PE   RF   V  KSL+K D   I++    DT +N+  Q        G+ +  T+  
Sbjct: 622 YFKPEFLNRFDDIVEFKSLSKDDLLKIVSLMIQDTNNNIKDQ--------GLTIHVTDPV 673

Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLED 399
            + L ++          +GAR L+ V++  +ED
Sbjct: 674 KEKLVNLGY-----NPAMGARPLRRVIQEQIED 701


>gi|317180091|dbj|BAJ57877.1| cell division protein [Helicobacter pylori F32]
          Length = 550

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q +E      L+  DKI 
Sbjct: 379 KHQRIEITESDILEVKDKIA 398


>gi|302390927|ref|YP_003826747.1| ATPase AAA [Acetohalobium arabaticum DSM 5501]
 gi|302203004|gb|ADL11682.1| ATPase AAA-2 domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 813

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 20  IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77
           I+GQ +A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT +++ LA    
Sbjct: 514 IVGQDEAIEAVSQAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELAKTLAEAMF 567

Query: 78  --GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                 I+++++++ E   V R V      +       + E  R +
Sbjct: 568 DDEEAMIRIDMSEYMEKHAVSRLVGAPPGYVGHEEGGQLTEQVRRQ 613


>gi|261409551|ref|YP_003245792.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261286014|gb|ACX67985.1| ATPase AAA-2 domain protein [Paenibacillus sp. Y412MC10]
          Length = 818

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +   L   +IGQ++A +AV+ A+R      +  A L+D   P    + +GPTGVGKT ++
Sbjct: 502 LEEILHSRVIGQEEAVKAVSRAVR------RARAGLKDPKRPMGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
           R LA          ++++++++ E            GYVG
Sbjct: 556 RALAEAMFGDENAVVRIDMSEYMEKHSTSRLVGAPPGYVG 595


>gi|253681670|ref|ZP_04862467.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           botulinum D str. 1873]
 gi|253561382|gb|EES90834.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           botulinum D str. 1873]
          Length = 813

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A ++++ A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 505 KLEEILHKRVIGQNEAVKSISKAVR------RARVGLKDPKRPIGSFIFLGPTGVGKTEL 558

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           S+ LA          I+++++++ E   V R V  
Sbjct: 559 SKALAEAMFGDENNMIRIDMSEYMEKHAVSRLVGS 593


>gi|227903174|ref|ZP_04020979.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
 gi|227868979|gb|EEJ76400.1| M41 family endopeptidase FtsH [Lactobacillus acidophilus ATCC 4796]
          Length = 718

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFSNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|225075507|ref|ZP_03718706.1| hypothetical protein NEIFLAOT_00520 [Neisseria flavescens
           NRL30031/H210]
 gi|224953142|gb|EEG34351.1| hypothetical protein NEIFLAOT_00520 [Neisseria flavescens
           NRL30031/H210]
          Length = 759

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 457 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 511

Query: 76  LAGAPFIKVEVTKFTEIGYVGR 97
             G P  + +++++ E   V R
Sbjct: 512 SMGVPLQRFDMSEYMEPHAVSR 533


>gi|224119914|ref|XP_002318194.1| predicted protein [Populus trichocarpa]
 gi|222858867|gb|EEE96414.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ +A  A++ A+    +R ++     D      +L  GPTGVGKT +++
Sbjct: 626 LEEELRKRVIGQDEAVAAISRAV----KRSRVGLKDPD-RPIAAMLFCGPTGVGKTELTK 680

Query: 72  RLAR---LAGAPFIKVEVTKFTEIGYVGR 97
            LAR    + +  ++++++++ E   V +
Sbjct: 681 ALARNYFGSESAMLRLDMSEYMERHTVSK 709


>gi|210134484|ref|YP_002300923.1| cell division protein FtsH [Helicobacter pylori P12]
 gi|210132452|gb|ACJ07443.1| cell division protein FtsH [Helicobacter pylori P12]
          Length = 550

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q  E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNALKHQRNEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 TESDILEVKDKIA 398


>gi|149248752|ref|XP_001528763.1| heat shock protein 78, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448717|gb|EDK43105.1| heat shock protein 78, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 822

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++ + L + ++GQ +A  +V+ A+     R Q      ++    + + +GP+GVGKT ++
Sbjct: 496 DMETILKQEVVGQDEAVHSVSDAI-----RLQRAGLTDEKRPIASFMFLGPSGVGKTHLT 550

Query: 71  RRLARLA-GAPFIKV--EVTKFTEIGYV 95
           + LA+     P   +  ++++F E   V
Sbjct: 551 KALAQFLFNDPNAIIRFDMSEFQEKHAV 578


>gi|145592687|ref|YP_001156984.1| ATPase [Salinispora tropica CNB-440]
 gi|145302024|gb|ABP52606.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440]
          Length = 863

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ  A  AVA A+     R+        +    + L +GPTGVGKT +++
Sbjct: 567 MEESLGEQVVGQARAVGAVADAV-----RRARAGIADPDRPTGSFLFLGPTGVGKTELAK 621

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 622 ALAGFLFDDERAMVRIDMSEYGEKHSVARLV 652


>gi|332977758|gb|EGK14518.1| ATP-dependent metalloprotease FtsH [Psychrobacter sp. 1501(2011)]
          Length = 635

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +P+ IL+VGP G GKT +++ +A  A  PF  +  + F E+ +VG     V  +      
Sbjct: 190 IPRGILMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQAKK 248

Query: 109 VAINIVRESRRDEV 122
            A  I+     D V
Sbjct: 249 NAPCIIFIDEIDAV 262


>gi|315037516|ref|YP_004031084.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|312275649|gb|ADQ58289.1| cell division protein [Lactobacillus amylovorus GRL 1112]
 gi|327182812|gb|AEA31259.1| cell division protein [Lactobacillus amylovorus GRL 1118]
          Length = 722

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|300742493|ref|ZP_07072514.1| putative cell division protein [Rothia dentocariosa M567]
 gi|300381678|gb|EFJ78240.1| putative cell division protein [Rothia dentocariosa M567]
          Length = 722

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 30/252 (11%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK +LL GP G GKT +++ +A  AGAPF  +  + F E+ +VG    ++ RDL   A 
Sbjct: 178 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASRV-RDLFKEAK 235

Query: 112 NIVRESRRDEVREQASINAEERILDA------LVGKTATSNTREVFRKKLRDGEISDKEI 165
           +             A +  +E  +DA      +          +   + L + +  D   
Sbjct: 236 SNPA----------AIVFVDE--IDAVGRRRGVGMGGGNDEREQTLNQLLVEMDGFDGNS 283

Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           ++ V   ++     D P     G  +            + ++  + V      +     D
Sbjct: 284 NVIVIAATNRPDVLD-PALLRPGRFDRQ--IGVDAPDMKGRQRILEVHAAGKPI-----D 335

Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283
           R +D+  V + +           ++E   + ARD+GN I      E + R +      S 
Sbjct: 336 RRVDLGQVAKRTPGFTGADLANVMNEAALLTARDNGNVIDDRAIDEAIDRVMAGPQRTSR 395

Query: 284 VSTKYGSINTDH 295
           + +++    T +
Sbjct: 396 IMSEHERKVTAY 407


>gi|240280730|gb|EER44234.1| vacuolar sorting protein [Ajellomyces capsulatus H143]
 gi|325089013|gb|EGC42323.1| vacuolar sorting-associated protein [Ajellomyces capsulatus H88]
          Length = 433

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 105/281 (37%), Gaps = 33/281 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK A+  A+    +   L    R     K ILL GP G GK+ +++ +A  A
Sbjct: 131 EDVAGLDQAKEALKEAVIMPMKFPHLFTGHRQPW--KAILLYGPPGTGKSYLAKAVATEA 188

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F  V  +      ++G +       LV    N+ RESR       A I  +E  +DA
Sbjct: 189 NSTFFSVSSSDLV-SKWMGES-----ERLVKQLFNMARESR------PAIIFIDE--VDA 234

Query: 138 LVGK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS---NFDI----PGGASV 187
           L G      +  +R +  + L   +   K+ +  +   +++I    +  I         +
Sbjct: 235 LCGPRGEGESEASRRIKTELLVQMQGVGKDSEGILVLGATNIPWQLDMAIRRRFQRRVHI 294

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS-------IQM 240
           G+ ++       M +      +++           E     D+  V +D+       IQ 
Sbjct: 295 GLPDVRARVKMFMLNVGSTPCQLTNADYRQLAEMSEGYSGSDISVVVQDALMQPIRKIQT 354

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
             +Y  V +DE +K+     G+   +    V  D   L+E 
Sbjct: 355 ATHYKKVIVDEQEKLTPCSPGDNGAMEMTWVDIDSDKLLEP 395


>gi|218288465|ref|ZP_03492755.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241438|gb|EED08612.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 676

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           M+       + + ++L   +IGQ +A R VA A+     R+      + +    + L VG
Sbjct: 363 MQADEQAKLKNLEADLAAVVIGQDEAVRQVARAI-----RRSRVGLRKGDRPIGSFLFVG 417

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           PTGVGKT ++RRLA +        I+++++++ E   V +
Sbjct: 418 PTGVGKTEMARRLAEILFGSKDAMIRLDMSEYMEKHSVSK 457



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 102/281 (36%), Gaps = 57/281 (20%)

Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212
           + +R    + +   + +      I +F   G   VG   ++   ++++   +   IR+ +
Sbjct: 387 EAVRQVARAIRRSRVGLRKGDRPIGSFLFVGPTGVGKTEMARRLAEILFGSKDAMIRLDM 446

Query: 213 QKCYPELMRDESDRLIDM---DTVHRDSIQMVEN-----YGIVFLDEFDKIVARDSGNGI 264
            +    + +    +LI        +  + Q+ E      Y ++ +DE +K          
Sbjct: 447 SE---YMEKHSVSKLIGAPPGYVGYEQAGQLTEQVRRHPYSLILVDEIEK---------- 493

Query: 265 GVSREGVQRDLLPLVE-GSSVSTKYGSINTDHILFIASGAFHVSRPADLL---------- 313
             +   VQ   L ++E G    ++  +++    L I +           +          
Sbjct: 494 --AHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTLIIMTSNAGEVERKSHVGFTTKPDEEE 551

Query: 314 --------------PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359
                         PE   RF   V  + L +++ R I+      ++ + +EL+   G+ 
Sbjct: 552 RADVDLGDLSAYFKPEFLNRFDAIVRFRPLGQAEVRRIV----ELMLAEVRELLAERGVA 607

Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400
           L +TE+++  LA    +        GAR L+  ++  +ED 
Sbjct: 608 LSWTEEAVHWLAKRGYH-----PAFGARPLRRTVQTYVEDP 643


>gi|221056118|ref|XP_002259197.1| ATPase [Plasmodium knowlesi strain H]
 gi|193809268|emb|CAQ39970.1| ATPase, putative [Plasmodium knowlesi strain H]
          Length = 952

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 20  IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           + G + AK  +   +   R   + + L A +     PK  LL G  G GKT +++ +A  
Sbjct: 395 VAGMKQAKEEIMEFVDFLRAPSKYENLGAKM-----PKGALLCGAPGTGKTLLAKAVAGE 449

Query: 77  AGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ 125
           A  PF  +  + F E+ +VG     V ++       A +I+     D V  +
Sbjct: 450 ANVPFFNISGSDFIEV-FVGIGPSRVRELFAQARKHAPSIIFIDEIDAVGRK 500


>gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 668

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 27/184 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G  + K  +      L++  +     A L     PK ILLVGP G GKT ++R LA
Sbjct: 238 NDVLGIDEFKEELEEIVEFLKHPKKYTDSGAKL-----PKGILLVGPPGTGKTLLARALA 292

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--REQASIN 129
             AG  F     ++F E+ +VG     V +I +     A +I+     D +  R +A   
Sbjct: 293 GEAGCAFFYKSGSEFDEM-FVGVGASRVREIFKTARQKAPSIIFIDEIDSIGGRRRAQDP 351

Query: 130 AEER-----ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              R     IL  + G   +         N  +V    L+     DK I + + D     
Sbjct: 352 GYSRDTINQILTEMDGFKQSESVIVIGATNFEQVLDPALKRPGRFDKMIHVPLPDVKGRE 411

Query: 177 SNFD 180
             F 
Sbjct: 412 QIFS 415


>gi|108804998|ref|YP_644935.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
 gi|108766241|gb|ABG05123.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
          Length = 834

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++   L   ++GQ +A +AV+ ++R      +  A L+D   P    + +GPTGVGKT +
Sbjct: 510 KMEEALHGRVVGQDEAIKAVSRSIR------RTMAGLKDPNRPSGSFVFLGPTGVGKTEL 563

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           +R LA          I+++++++ E   V R V  
Sbjct: 564 ARTLAEYLFGDQDAMIRLDMSEYMERHTVSRLVGS 598



 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE+  R    +    L +   R I+       + + +E +    + L+FT +++D LA+ 
Sbjct: 708 PELLNRIDEIIVFHKLEREHVRQII----EIQVKRLREQLAERNVTLEFTPEALDKLAEE 763

Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS------ASDLQEKTVVIDAEYVRLHIGDFP 427
             +        GAR L+ V++R++ED            D     V I+A        +  
Sbjct: 764 GYD-----PAFGARPLKRVLQRMVEDPMSEMILRGDIPD--GSKVTIEAN--DKSADEIG 814

Query: 428 SET 430
            + 
Sbjct: 815 EDE 817


>gi|323491379|ref|ZP_08096564.1| putative protein disaggregation chaperone [Vibrio brasiliensis LMG
           20546]
 gi|323314505|gb|EGA67584.1| putative protein disaggregation chaperone [Vibrio brasiliensis LMG
           20546]
          Length = 871

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  ELD+ +IGQ  AK+ +A A+     R                L+ GP+GVGKT  + 
Sbjct: 567 LEEELDKRVIGQDVAKQELAKAI-----RISRAGLTDSRKPIGVFLMCGPSGVGKTETAM 621

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
            LA            + +T+F E            GYVG
Sbjct: 622 ALAEQLYGGSNDMTIINMTEFKEEHKISMLLGSPAGYVG 660


>gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 697

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|309812358|ref|ZP_07706113.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185]
 gi|308433663|gb|EFP57540.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185]
          Length = 900

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   +IGQ+ A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 576 MEDFLGERLIGQKAAVEAVSDAV-----RRSRSGIADPDRPTGSFLFLGPTGVGKTELAK 630

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            LA          +++++++++E   V R +  
Sbjct: 631 SLADFLFDDERAMVRIDMSEYSERHAVARLIGS 663



 Score = 41.1 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 108/308 (35%), Gaps = 38/308 (12%)

Query: 137 ALVGKTATSNTREVF-RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA----SVGILN 191
            L G+T      E F  ++L   + + + +   V  + S I++ D P G+        + 
Sbjct: 565 LLEGETEKLLRMEDFLGERLIGQKAAVEAVSDAVRRSRSGIADPDRPTGSFLFLGPTGVG 624

Query: 192 LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI---------DMDTVHRDSIQMVE 242
            +EL   +       +  M          R    RLI         +      ++++   
Sbjct: 625 KTELAKSLADFLFDDERAMVRIDMSEYSERHAVARLIGSPPGYVGYEEGGQLTEAVRR-R 683

Query: 243 NYGIVFLDEFDK---------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293
            Y +V LDE +K         +   D G         V    + LV  S++ +++  ++ 
Sbjct: 684 PYSVVLLDEVEKAHPETFDILLQVLDDGRLTDGQGRTVDFRNVILVMTSNLGSQFL-VDP 742

Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353
                   GA   +  A   PE   R    V    L + +   I+    ++L  +    +
Sbjct: 743 TMAPEAKHGAVMGAVRAQFKPEFLNRLDEIVIFDPLTRDELSHIVELQVASLSKR----L 798

Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED----ISFSASDLQE 409
               I L+ T  + + LA+   +        GAR L+ ++++ + D       +   L  
Sbjct: 799 ADRRITLEVTPAAREWLAETGYD-----PAYGARPLRRLVQKEIGDRLARALLAGEVLDG 853

Query: 410 KTVVIDAE 417
           + V ID E
Sbjct: 854 EKVTIDVE 861


>gi|307711182|ref|ZP_07647604.1| clpC [Streptococcus mitis SK321]
 gi|307617144|gb|EFN96322.1| clpC [Streptococcus mitis SK321]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|302805623|ref|XP_002984562.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii]
 gi|300147544|gb|EFJ14207.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii]
          Length = 453

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK  LLVGP G GKT +++  A  AG PF+ +  + FTE+ +VG    ++ RDL   A
Sbjct: 19  RIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSRV-RDLFAQA 76


>gi|303317830|ref|XP_003068917.1| Heat shock protein HSP98, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108598|gb|EER26772.1| Heat shock protein HSP98, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320038965|gb|EFW20900.1| heat shock protein CLPA [Coccidioides posadasii str. Silveira]
          Length = 920

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L + +IGQ++A ++V+ A+R         + L +   P + L  GP+G GKT +++
Sbjct: 589 MESHLGKIVIGQKEAVQSVSNAIR------LQRSGLANPNQPPSFLFCGPSGTGKTLLTK 642

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GYVG +    + + +
Sbjct: 643 ALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTEAL 692


>gi|225859966|ref|YP_002741476.1| ClpB protein [Streptococcus pneumoniae 70585]
 gi|225721797|gb|ACO17651.1| ClpB protein [Streptococcus pneumoniae 70585]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|225560725|gb|EEH09006.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
          Length = 433

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 105/281 (37%), Gaps = 33/281 (11%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             + G   AK A+  A+    +   L    R     K ILL GP G GK+ +++ +A  A
Sbjct: 131 EDVAGLDQAKEALKEAVIMPMKFPHLFTGHRQPW--KAILLYGPPGTGKSYLAKAVATEA 188

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137
            + F  V  +      ++G +       LV    N+ RESR       A I  +E  +DA
Sbjct: 189 NSTFFSVSSSDLV-SKWMGES-----ERLVKQLFNMARESR------PAIIFIDE--VDA 234

Query: 138 LVGK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS---NFDI----PGGASV 187
           L G      +  +R +  + L   +   K+ +  +   +++I    +  I         +
Sbjct: 235 LCGPRGEGESEASRRIKTELLVQMQGVGKDSEGILVLGATNIPWQLDMAIRRRFQRRVHI 294

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS-------IQM 240
           G+ ++       M +      +++           E     D+  V +D+       IQ 
Sbjct: 295 GLPDVRARVKMFMLNVGSTPCQLTNADYRQLAEMSEGYSGSDISVVVQDALMQPIRKIQT 354

Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281
             +Y  V +DE +K+     G+   +    V  D   L+E 
Sbjct: 355 ATHYKKVIVDEQEKLTPCSPGDNGAMEMTWVDIDSDKLLEP 395


>gi|172036856|ref|YP_001803357.1| ATP-dependent Clp protease ATP-binding subunit [Cyanothece sp. ATCC
           51142]
 gi|171698310|gb|ACB51291.1| ATP-dependent Clp protease, ATP-binding subunit [Cyanothece sp.
           ATCC 51142]
          Length = 872

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ++A  AV+ A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 568 LEDELHERVIGQEEAVTAVSEAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA+         ++++++++ E   V R
Sbjct: 622 KALAKNLFDTEEAIVRIDMSEYMEKHSVSR 651


>gi|116493273|ref|YP_805008.1| FtsH-2 peptidase [Pediococcus pentosaceus ATCC 25745]
 gi|116103423|gb|ABJ68566.1| membrane protease FtsH catalytic subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 693

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 219 RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFDQA 276

Query: 111 INI 113
              
Sbjct: 277 KKN 279


>gi|154706915|ref|YP_001425322.1| ClpB [Coxiella burnetii Dugway 5J108-111]
 gi|154356201|gb|ABS77663.1| ClpB [Coxiella burnetii Dugway 5J108-111]
          Length = 859

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 564 METELHKRVIGQDEAVNAVANAIR------RSRAGLSDPNRPVGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|29831240|ref|NP_825874.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
 gi|29608355|dbj|BAC72409.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
           MA-4680]
          Length = 841

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+DA +A++ A+R      +  A L+D   P    +  GP+GVGKT +S
Sbjct: 506 MEDELHKRVIGQKDAVKALSKAIR------RTRAGLKDPKRPGGSFIFAGPSGVGKTELS 559

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
           + LA          I +++++F+E   V R        +             ++VR +  
Sbjct: 560 KALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYV----GYEEGGQLTEKVRRKPF 615

Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187
                  ++        S  + +   +L D +    +    V   ++++   DI  G ++
Sbjct: 616 SVVLFDEVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNL 675

Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD----TVHRDSIQMVEN 243
           G     +  S        ++++  V     +  R E    +D       + +D I  + +
Sbjct: 676 GFAAQGDTKSN------YERMKNKVADELKQHFRPEFLNRVDDVVVFPQLTQDDILRIVD 729

Query: 244 YGIVFLDE 251
             I  +DE
Sbjct: 730 LMITKVDE 737


>gi|268574816|ref|XP_002642387.1| C. briggsae CBR-YMEL-1 protein [Caenorhabditis briggsae]
 gi|187025389|emb|CAP35857.1| CBR-YMEL-1 protein [Caenorhabditis briggsae AF16]
          Length = 670

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           YI    +AK     +   L++  +  +L   L     PK +LLVGP G GKT ++R +A 
Sbjct: 196 YIFLMDEAKLEVEEIVDYLKDPEKYSRLGGRL-----PKGVLLVGPPGTGKTLLARAIAG 250

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF     ++F E+  VG+   ++ RDL D A
Sbjct: 251 EAQVPFFHTAGSEFDEV-LVGQGARRV-RDLFDKA 283


>gi|317491429|ref|ZP_07949865.1| ATP-dependent Clp protease ATP-binding subunit protein ClpA
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920976|gb|EFV42299.1| ATP-dependent Clp protease ATP-binding subunit protein ClpA
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ  A  A+  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 453 DRLKMLVFGQDKAISALTEAIK-----MSRAGLGQDHKPVGSFLFAGPTGVGKTEVTVQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+      ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 AKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|292487809|ref|YP_003530684.1| chaperone protein ClpA [Erwinia amylovora CFBP1430]
 gi|292899038|ref|YP_003538407.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198886|emb|CBJ45996.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291553231|emb|CBA20276.1| Chaperone protein clpA [Erwinia amylovora CFBP1430]
 gi|312171927|emb|CBX80184.1| Chaperone protein clpA [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ +A   +  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 453 DRLKMLVFGQDNAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKTEVTVQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 AKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|218661858|ref|ZP_03517788.1| chaperone heat-shock protein [Rhizobium etli IE4771]
          Length = 335

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ DA +AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 32  MEDELGKSVIGQGDAVQAVSRAVR------RARAGLQDPNRPIGSFIFLGPTGVGKTELT 85

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LAR         ++++++++ E   V R
Sbjct: 86  KALARFLFDDETAMVRMDMSEYMEKHSVAR 115



 Score = 36.4 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 40/271 (14%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D +  I +F   G   VG   L++  ++ +       +RM + +    + +    RLI
Sbjct: 61  LQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETAMVRMDMSE---YMEKHSVARLI 117

Query: 229 ---------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREG 270
                    D      ++++    Y +V  DE +K         +   D G         
Sbjct: 118 GAPPGYVGYDEGGALTEAVRR-RPYQVVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRT 176

Query: 271 VQRDLLPLVEGSSVSTKYGSI--NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
           V      ++  S++  +Y +   + D    +      V R     PE   R    +    
Sbjct: 177 VDFRNTMIIMTSNLGAEYLTQLKDGDDSDTVREQVMEVVRGH-FRPEFLNRIDEIILFHR 235

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L + +   I+       + +   L+    I++D  ED+   LA+   +        GAR 
Sbjct: 236 LKREEMGAIV----DIQLKRLVALLSERKIVIDLDEDARHWLANKGYD-----PVYGARP 286

Query: 389 LQTVMERVLEDISFS------ASDLQEKTVV 413
           L+ V+++ ++D            D     V 
Sbjct: 287 LKRVIQKFVQDPLAEQILSGQVPDGSTVKVT 317


>gi|182685132|ref|YP_001836879.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|303254856|ref|ZP_07340941.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS455]
 gi|303259682|ref|ZP_07345658.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262149|ref|ZP_07348094.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264584|ref|ZP_07350503.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS397]
 gi|303266107|ref|ZP_07352001.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|303269948|ref|ZP_07355685.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|182630466|gb|ACB91414.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae CGSP14]
 gi|301802859|emb|CBW35637.1| putative stress response-related Clp ATPase [Streptococcus
           pneumoniae INV200]
 gi|302598127|gb|EFL65188.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS455]
 gi|302636789|gb|EFL67279.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639234|gb|EFL69693.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640513|gb|EFL70923.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS458]
 gi|302644411|gb|EFL74664.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS457]
 gi|302645954|gb|EFL76182.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae BS397]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|169834204|ref|YP_001695552.1| chaperone ClpB 1 [Streptococcus pneumoniae Hungary19A-6]
 gi|168996706|gb|ACA37318.1| chaperone ClpB 1 [Streptococcus pneumoniae Hungary19A-6]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|167519056|ref|XP_001743868.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777830|gb|EDQ91446.1| predicted protein [Monosiga brevicollis MX1]
          Length = 442

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +AK   +     L+   R ++L A      +PK  LL GP G GKT +++ +A
Sbjct: 2   NDVAGLSEAKVELKEFVEFLKTPERFEKLGAK-----VPKGALLTGPPGTGKTLLAKAVA 56

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  V  + F E+ +VG    ++ RDL   A
Sbjct: 57  GEAQVPFFAVSGSDFVEM-FVGVGPSRV-RDLFKQA 90


>gi|163791060|ref|ZP_02185481.1| cell division protein FtsH [Carnobacterium sp. AT7]
 gi|159873705|gb|EDP67788.1| cell division protein FtsH [Carnobacterium sp. AT7]
          Length = 718

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  ++F E+ +VG    ++ RDL + A
Sbjct: 221 RIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASRV-RDLFENA 278


>gi|149007762|ref|ZP_01831371.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147760757|gb|EDK67729.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP18-BS74]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|148978564|ref|ZP_01815016.1| ClpB protein [Vibrionales bacterium SWAT-3]
 gi|145962353|gb|EDK27634.1| ClpB protein [Vibrionales bacterium SWAT-3]
          Length = 857

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74
           L + +IGQ +A   V+ A+R      +  A L D   P  + L +GPTGVGKT + + LA
Sbjct: 566 LHKRVIGQGEAVEVVSNAIR------RSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGRNV 99
                     +++++++F E   V R V
Sbjct: 620 NFMFDSDDAMVRIDMSEFMEKHSVARLV 647


>gi|531754|emb|CAA56955.1| YTA12 (=RCA1) [Saccharomyces cerevisiae]
          Length = 825

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G  +AK  +   +   +   R +++ A +     P+  +L GP G GKT +++  A
Sbjct: 348 KELAGCDEAKEEIMEFVSFLKEPSRYEKMGAKI-----PRGAILSGPPGTGKTLLAKATA 402

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRESRRDEVREQ-- 125
             AG PF  V  ++F E+ +VG    ++ RDL   A       + I       + R++  
Sbjct: 403 GEAGVPFYFVSGSEFVEM-FVGVGAARV-RDLFKTARENAPSIVFIDEIDAIGKARQKGN 460

Query: 126 ---ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVAD 171
              A+   E  +   LV              A +N  ++  K L      D+ I+I+  +
Sbjct: 461 FSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPE 520

Query: 172 TSSDISNFDI---PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM--RDESDR 226
                + F +       +  I +L    + +        I     +         +++ +
Sbjct: 521 LEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVK 580

Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257
           L   +      I  VE    +   E  K+VA
Sbjct: 581 LNHFEQAIERVIGGVERKSKLLSPEEKKVVA 611


>gi|12841566|dbj|BAB25259.1| unnamed protein product [Mus musculus]
          Length = 556

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 282 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 339

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 340 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 370


>gi|300114805|ref|YP_003761380.1| ATP-dependent chaperone ClpB [Nitrosococcus watsonii C-113]
 gi|299540742|gb|ADJ29059.1| ATP-dependent chaperone ClpB [Nitrosococcus watsonii C-113]
          Length = 865

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ + L + ++GQ +A   V+ A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEAALHQRVVGQDEAIAVVSNAIR------RSRAGLADPNRPNGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAMFLFDTEEAMVRIDMSEFMERHSVAR 645


>gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 697

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 248 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 305

Query: 111 INI 113
              
Sbjct: 306 KKN 308


>gi|255969567|gb|ACU45413.1| ATP-dependent Zn protease [Peanut witches'-broom phytoplasma]
          Length = 685

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 40/257 (15%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD-V 109
            +PK +LL GP G GKT +++ +A  AG  F     ++F E  YVG    +I R+L    
Sbjct: 224 RIPKGVLLSGPPGTGKTLLAKAVAGEAGVAFFATSGSEFVEK-YVGVGASRI-RNLFQKA 281

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169
           A         DEV   A          A+   +   NT      +L DG  S+ EI +  
Sbjct: 282 AQYSPCIIFIDEVEGLAHKRG------AISHNSEHDNTLNQLLVEL-DGFGSNTEIIVIA 334

Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV-----QKCYPELMRDES 224
           A                       E+    +    +   R ++     +     L     
Sbjct: 335 ATNQP-------------------EMLDSALLRPGRFDRRFTINLPSARDRKAILELHAK 375

Query: 225 DR----LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
           ++     +++  +   +I          L+E   + AR     + +  + V   +  ++ 
Sbjct: 376 NKHFSPNVNLSEIAEQTIGFSGAQLEGVLNESALLAAR--RRSLYIEPQDVNEAIDRILI 433

Query: 281 GSSVSTKYGSINTDHIL 297
           GS+V   + S     ++
Sbjct: 434 GSTVKKDFLSKKEKKLV 450


>gi|271968435|ref|YP_003342631.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270511610|gb|ACZ89888.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 663

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 38  WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97
           +RR           +PK +LL GP G GKT ++R +A  A  PF     ++F E+  VG 
Sbjct: 239 YRRLGA-------KLPKGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEM-IVGV 290

Query: 98  NVEQIIRDLVDVA 110
              ++ R+L + A
Sbjct: 291 GASRV-RELFEEA 302


>gi|255723906|ref|XP_002546882.1| heat shock protein 78, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240134773|gb|EER34327.1| heat shock protein 78, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 811

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 19/97 (19%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + ++GQ +A  AV+ A+     R Q      +     + + +GPTG GKT +++ LA+
Sbjct: 493 LRQSVVGQDEAIDAVSDAV-----RLQRAGLTSENRPIASFMFLGPTGTGKTELTKSLAK 547

Query: 76  LA---GAPFIKVEVTKFTEI-----------GYVGRN 98
                    I+ ++++F E            GYVG +
Sbjct: 548 FLFNDKNAVIRFDMSEFQEKHTISRLIGSPPGYVGYD 584


>gi|303271571|ref|XP_003055147.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463121|gb|EEH60399.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 941

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + ++G  +AK  +      L+N     +L   L     PK +LL GP G GKT ++R +A
Sbjct: 440 KDVLGCDEAKEELQEIVEYLKNPDLFTRLGGKL-----PKGVLLSGPPGTGKTLLARAVA 494

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             AG PF     ++F E+ +VG   +++ R L   A
Sbjct: 495 GEAGVPFFYRAGSEFEEM-FVGVGSKRV-RQLFAAA 528


>gi|221503936|gb|EEE29613.1| Clp ATP-binding chain B1, putative [Toxoplasma gondii VEG]
          Length = 898

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + 
Sbjct: 720 LEKDLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELC 773

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA L        +K++++++ E   + R
Sbjct: 774 RSLAELMFDSEDAMVKIDMSEYMEKHTISR 803


>gi|148991946|ref|ZP_01821720.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147928995|gb|EDK80006.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP9-BS68]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|167031687|ref|YP_001666918.1| ATP-dependent chaperone ClpB [Pseudomonas putida GB-1]
 gi|166858175|gb|ABY96582.1| ATP-dependent chaperone ClpB [Pseudomonas putida GB-1]
          Length = 854

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEALLHQRVIGQGEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|77165844|ref|YP_344369.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
 gi|254434018|ref|ZP_05047526.1| ATPase, AAA family [Nitrosococcus oceani AFC27]
 gi|76884158|gb|ABA58839.1| ATP-dependent Clp protease [Nitrosococcus oceani ATCC 19707]
 gi|207090351|gb|EDZ67622.1| ATPase, AAA family [Nitrosococcus oceani AFC27]
          Length = 865

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ + L + ++GQ +A   V+ A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 QMEAALHQRVVGQDEAVAVVSNAIR------RSRAGLADPNRPNGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAAFLFDTEEAMVRIDMSEFMERHSVAR 645


>gi|301117244|ref|XP_002906350.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
 gi|262107699|gb|EEY65751.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
          Length = 410

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I G   AK+ +  A+     R  L   LR    P+ +LL GP G GKT +++ +A  A 
Sbjct: 138 DIAGLDVAKQILQEAVILPTLRPDLFTGLRAP--PRGVLLFGPPGTGKTLLAKAVATEAK 195

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +  +  T   +VG   E+++R L ++A
Sbjct: 196 ATFFNISASSLT-SKWVGEG-EKLVRALFEMA 225


>gi|194400003|gb|ACF60960.1| neuronal spastin [Gallus gallus]
          Length = 613

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 339 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 397 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 427


>gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6]
 gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6]
          Length = 781

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 25/239 (10%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I G ++  + +   +    R  +L   L  E  PK +LL GP G GKT +++ +A  A
Sbjct: 177 EDIGGLKEEVKKIREMVELPMRYPELFDKLGIE-PPKGVLLAGPPGTGKTLLAKAVANEA 235

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQ---IIRDLVDVAINIVRESRRDEV---REQASINAE 131
           GA F  +   +     YVG   E    I  +  + + +I+     D V   R++AS   E
Sbjct: 236 GANFYTINGPEIM-SKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVE 294

Query: 132 ER-------ILDALVGKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179
            R       +LD L G+      A +N  +     LR     D+E+ I + D  +     
Sbjct: 295 RRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMALRRPGRLDRELTIGIPDRHARNEIL 354

Query: 180 -----DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233
                ++P         +  + ++++G   + KI   V+         E ++++  + +
Sbjct: 355 QIHTRNMPLQPDYEKNEVIPVLNELIGEFDRSKIESIVKLVEKASSEAEIEKILKDEDI 413



 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 23/228 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G +D K+ +  A+    + +++   +     PK +LL GP G GKT +++ +A  + 
Sbjct: 508 DVGGLEDIKQDLKEAVEWPIKNREMFERMGI-RPPKGVLLFGPPGTGKTLLAKAVANESE 566

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQ---------A 126
           A FI V+  +     +VG +   + +I R     A  ++     D V  +          
Sbjct: 567 ANFISVKGPEIF-SKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMSFGGSGV 625

Query: 127 SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178
           S     ++L  L G          A +N   +    L      D+ + + V D ++    
Sbjct: 626 SEKVVNQLLTELDGLEEPKDVVIIAATNRPNLLDPALLRPGRLDRIVLVTVPDENARFEI 685

Query: 179 FDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225
           F +   G  +G     +  SK         I    ++     +R++ +
Sbjct: 686 FKVHTKGMPIGKDVDLQKLSKETNGYTGADIEALCREAAMIALREDIN 733


>gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
 gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
          Length = 703

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             IIG    K+ +   +    +  +L  ++R E+ P  ++L GP G GKT +++ +A  +
Sbjct: 433 EDIIGLDQVKQELKEVVEWPLKYSKLYEEMRAEV-PSGVMLYGPPGTGKTMLAKAVAHES 491

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           GA FI V   +   + +VG   E+ IR++   A
Sbjct: 492 GANFIAVSGPELMNM-WVGE-TERAIREVFKRA 522



 Score = 46.5 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 28/220 (12%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PK +LL GP G GKT I++ LA    A F  +   +     Y G + E+ +R++ + A
Sbjct: 205 RPPKGVLLYGPPGTGKTLIAKALANSVMANFFFISGPEIG-SKYYGES-EKRLREIFEQA 262

Query: 111 -------INIVRESRRDEVREQASINAEERILDALVGKTA------------TSNTREVF 151
                  I I         R+  +  A++RI+  L+                 +N     
Sbjct: 263 EKSAPSMIFIDEIDAIAPNRDVTNGEADKRIVAQLLTLMDGVSSSGGLLVLGATNRPNAI 322

Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFD-----IPGGASVGILNLSELFSKVMGSGRKK 206
              LR     D+EI+I V D  + +         IP    V +  ++ + +  +G+  + 
Sbjct: 323 DPALRRPGRFDREIEIPVPDKRARLDIIKIHTRRIPLAEDVDLEAIASMTNGFVGADLEA 382

Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246
            +R +           E  ++   D   ++++++VE   +
Sbjct: 383 LVREATMSALRRTQNPEEVKVTMADF--QNAMKIVEPSAL 420


>gi|114639256|ref|XP_001174710.1| PREDICTED: caseinolytic peptidase B protein homolog isoform 3 [Pan
           troglodytes]
          Length = 707

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ+ A   V  A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIR------RKENGWYDEEHPLVFLFLGSSGIGKTELAK 392

Query: 72  RLARLAGAP----FIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + A+         FI++++++F E            GYVG      +   +    N
Sbjct: 393 QTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPN 448


>gi|119186351|ref|XP_001243782.1| hypothetical protein CIMG_03223 [Coccidioides immitis RS]
          Length = 920

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + S L + +IGQ++A ++V+ A+R         + L +   P + L  GP+G GKT +++
Sbjct: 589 MESHLGKIVIGQKEAVQSVSNAIR------LQRSGLANPNQPPSFLFCGPSGTGKTLLTK 642

Query: 72  RLARLA-GAP--FIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107
            LA      P   I+ +++++ E            GYVG +    + + +
Sbjct: 643 ALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAGGQLTEAL 692


>gi|90021332|ref|YP_527159.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Saccharophagus
           degradans 2-40]
 gi|89950932|gb|ABD80947.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Saccharophagus
           degradans 2-40]
          Length = 761

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++   L   + GQ +A   +  A++              +    + L  GPTGVGKT + 
Sbjct: 460 KLEDTLRMTVFGQHEAISTITSAIK-----LSRAGLTNHDKPIGSFLFAGPTGVGKTELC 514

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           ++LA   G   I+ +++++ E            GYVG +   ++ D V    + 
Sbjct: 515 KQLATAMGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVTKHPHC 568


>gi|332071276|gb|EGI81771.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA17545]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|325960163|ref|YP_004291629.1| AAA ATPase central domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331595|gb|ADZ10657.1| AAA ATPase central domain protein [Methanobacterium sp. AL-21]
          Length = 373

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             +IGQ+ AK   + + + L+          +   E  P+N+L  G  G GKT +++ L+
Sbjct: 127 EDVIGQERAKTKCKIITMYLK--------EPEKFKEWAPRNVLFHGTPGTGKTMLAKSLS 178

Query: 75  RLAGAPFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122
                P   V+ T      +G   R + ++       A +++     D +
Sbjct: 179 NELNVPLYLVKATSLIGEHVGDGARQIHELFEMAAANAPSVIFIDEMDAI 228


>gi|325273285|ref|ZP_08139562.1| ATP-dependent chaperone ClpB [Pseudomonas sp. TJI-51]
 gi|324101570|gb|EGB99139.1| ATP-dependent chaperone ClpB [Pseudomonas sp. TJI-51]
          Length = 854

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++ + L + +IGQ +A  AVA A+R      +  A L D   P    L +GPTGVGKT +
Sbjct: 561 KMEALLHQRVIGQGEAVTAVANAVR------RSRAGLSDPNRPSGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
            + LA          +++++++F E   V R
Sbjct: 615 CKALAEFLFDTEEAMVRIDMSEFMEKHSVAR 645


>gi|307707859|ref|ZP_07644336.1| ClpC [Streptococcus mitis NCTC 12261]
 gi|307616119|gb|EFN95315.1| ClpC [Streptococcus mitis NCTC 12261]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|282896404|ref|ZP_06304425.1| ATPase [Raphidiopsis brookii D9]
 gi|281198692|gb|EFA73572.1| ATPase [Raphidiopsis brookii D9]
          Length = 890

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ++A  AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 573 KLEHHLHERVIGQEEAVLAVSAAIR------RARAGMKDPSRPIGSFLFMGPTGVGKTEL 626

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         ++++++++ E   V R V
Sbjct: 627 ARALAQFLFDSEDALVRLDMSEYMEKHSVSRLV 659


>gi|213963635|ref|ZP_03391887.1| ATP-dependent chaperone ClpB [Capnocytophaga sputigena Capno]
 gi|213953763|gb|EEB65093.1| ATP-dependent chaperone ClpB [Capnocytophaga sputigena Capno]
          Length = 867

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R ++GQ++A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEKELHRRVVGQEEAIEAVSDAIR------RSRAGLQDPRRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEYLFDDENAMTRIDMSEYQEKHAVSRLV 645


>gi|148654368|ref|YP_001274573.1| ATPase [Roseiflexus sp. RS-1]
 gi|148566478|gb|ABQ88623.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1]
          Length = 402

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 9   PREIVSELDRY-IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           P +IV +  R+ I GQ+ A  AV I + NR R      + R       +L +GPTGVGKT
Sbjct: 18  PLDIVEKQLRHTIFGQERAIEAV-IRVLNRARFGFSAGNPRRPRAT--LLFLGPTGVGKT 74

Query: 68  AISRRLARLA---GAPFIKVEVTKFTEIG-----------YVGRN 98
           A++RRLA+L    G  F+K++ + F++             YVGR+
Sbjct: 75  AMARRLAQLLRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRD 119


>gi|58336617|ref|YP_193202.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|58253934|gb|AAV42171.1| cell division protein [Lactobacillus acidophilus NCFM]
          Length = 718

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFSNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|332673127|gb|AEE69944.1| cell division protein (ftsH) [Helicobacter pylori 83]
          Length = 550

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q +E      L+  DKI 
Sbjct: 379 KHQRIEITESDILEVKDKIA 398


>gi|332071464|gb|EGI81958.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA41301]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|325955980|ref|YP_004286590.1| cell division protein [Lactobacillus acidophilus 30SC]
 gi|325332545|gb|ADZ06453.1| cell division protein [Lactobacillus acidophilus 30SC]
          Length = 722

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|310767161|gb|ADP12111.1| Chaperone protein clpA [Erwinia sp. Ejp617]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ +A   +  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 453 DRLKMLVFGQDNAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKTEVTVQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 AKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|296185108|ref|ZP_06853518.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049942|gb|EFG89366.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 491

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 39/254 (15%)

Query: 19  YIIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++AK  +      L+N  + +   A +     PK I+L GP G GKT +++ LA 
Sbjct: 66  DVAGSEEAKENMQDIIEFLKNPKKFEDFGAKI-----PKGIILYGPPGTGKTLLAKALAG 120

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135
             G+ FI    + F E  YVG    ++ R L + A               A I  +E  +
Sbjct: 121 ETGSEFIPTSGSYFIEK-YVGVGASRV-RKLFNKARKNSP----------AIIFIDE--I 166

Query: 136 DALVGK----TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN----------FDI 181
           DA+ GK      TS   +   + L + +  + + ++ V   ++ +            FD 
Sbjct: 167 DAIGGKRGSGKDTSEDAKTLNQLLVEMDGFNDKENVIVVAATNRLDMLDDALLRAGRFDR 226

Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241
                +  LN      KV    +     + + +   + +      L ++  ++  SI  +
Sbjct: 227 HVMVGLPDLNARYKILKVHSKNKPLSPSVDLFQIAKQTVYMSGADLANV--INEASIYAI 284

Query: 242 -ENYGIVFLDEFDK 254
            ENY  + L+  DK
Sbjct: 285 KENYSEITLNHIDK 298


>gi|294660198|ref|NP_852808.2| cell division protease FtsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|310946906|sp|D3FFN2|FTSH_MYCGH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|284811848|gb|AAP56376.2| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930269|gb|ADC30208.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(high)]
          Length = 765

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 2   KLTFNFSPREIVSELDRYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILL 58
           K TF F+           + G ++ K  +      L+   +  Q+ A       P+ ++L
Sbjct: 268 KSTFKFT----------DVAGIEEEKSELIELVDYLKRPGKYVQMGA-----RTPRGVVL 312

Query: 59  VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRE 116
            GP G GKT +++ +A  AG PF +V  + F +  +G   + V  +       A  I+  
Sbjct: 313 YGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCIIFI 372

Query: 117 SRRDEVREQ 125
              D V  +
Sbjct: 373 DEIDSVGSK 381


>gi|283478940|emb|CAY74856.1| Chaperone protein clpA [Erwinia pyrifoliae DSM 12163]
          Length = 760

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ +A   +  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 455 DRLKMLVFGQDNAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKTEVTVQL 509

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 510 AKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 559


>gi|219870451|ref|YP_002474826.1| ATP-dependant Clp protease subunit B [Haemophilus parasuis SH0165]
 gi|219690655|gb|ACL31878.1| ATP-dependent Clp protease chain B/ATPases with chaperone activity,
           ATP-binding subunit [Haemophilus parasuis SH0165]
          Length = 857

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQSEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFLFDDQDAMVRIDMSEFMEKHSVSRLV 647


>gi|188534288|ref|YP_001908085.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188029330|emb|CAO97207.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ +A   +  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 453 DRLKMLVFGQDNAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKTEVTVQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 AKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|168484349|ref|ZP_02709301.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC1873-00]
 gi|168491727|ref|ZP_02715870.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC0288-04]
 gi|225855688|ref|YP_002737200.1| chaperone ClpB 1 [Streptococcus pneumoniae JJA]
 gi|225862011|ref|YP_002743520.1| chaperone ClpB 1 [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229669|ref|ZP_06963350.1| chaperone ClpB 1 [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255666|ref|ZP_06979252.1| chaperone ClpB 1 [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501710|ref|YP_003723650.1| ATP-binding Clp protease subunit [Streptococcus pneumoniae
           TCH8431/19A]
 gi|172042451|gb|EDT50497.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC1873-00]
 gi|183574069|gb|EDT94597.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC0288-04]
 gi|225723084|gb|ACO18937.1| chaperone ClpB 1 [Streptococcus pneumoniae JJA]
 gi|225726430|gb|ACO22281.1| chaperone ClpB 1 [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237305|gb|ADI68436.1| ATP-binding Clp protease subunit [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327388939|gb|EGE87287.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA04375]
 gi|332198820|gb|EGJ12902.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA47368]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|167856244|ref|ZP_02478978.1| chaperone ClpB [Haemophilus parasuis 29755]
 gi|167852631|gb|EDS23911.1| chaperone ClpB [Haemophilus parasuis 29755]
          Length = 857

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEEVLHKRVIGQSEAVDAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KTLANFLFDDQDAMVRIDMSEFMEKHSVSRLV 647


>gi|308807062|ref|XP_003080842.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
 gi|116059303|emb|CAL55010.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
          Length = 891

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 2   KLTFNFSPR-EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           ++      R E  + L   + G   AK  +   +    +  +  A      +PK +LL G
Sbjct: 390 RVNTKMKLRDETETVLFDDVAGIGTAKVELQEVVDFFLKPDKFKASGS--KVPKGVLLTG 447

Query: 61  PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
           P G GKT ++R +A  AGA F  +  ++F E+ +VG    ++ RDL   A   
Sbjct: 448 PPGCGKTLLARAVAGEAGATFFSLAASEFVEM-FVGVGAARV-RDLFQQAKKQ 498


>gi|13540606|ref|NP_110440.1| caseinolytic peptidase B protein homolog [Homo sapiens]
 gi|25009267|sp|Q9H078|CLPB_HUMAN RecName: Full=Caseinolytic peptidase B protein homolog; AltName:
           Full=Suppressor of potassium transport defect 3
 gi|12053313|emb|CAB66843.1| hypothetical protein [Homo sapiens]
 gi|13623579|gb|AAH06404.1| ClpB caseinolytic peptidase B homolog (E. coli) [Homo sapiens]
 gi|119595264|gb|EAW74858.1| ClpB caseinolytic peptidase B homolog (E. coli), isoform CRA_a
           [Homo sapiens]
 gi|157928554|gb|ABW03573.1| ClpB caseinolytic peptidase B homolog (E. coli) [synthetic
           construct]
 gi|157929202|gb|ABW03886.1| ClpB caseinolytic peptidase B homolog (E. coli) [synthetic
           construct]
          Length = 707

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ+ A   V  A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIR------RKENGWYDEEHPLVFLFLGSSGIGKTELAK 392

Query: 72  RLARLAGAP----FIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + A+         FI++++++F E            GYVG      +   +    N
Sbjct: 393 QTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPN 448


>gi|325140016|gb|EGC62545.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           meningitidis CU385]
          Length = 767

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 465 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 519

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + ++   + 
Sbjct: 520 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKQPHC 568


>gi|316984241|gb|EFV63217.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           meningitidis H44/76]
 gi|325200484|gb|ADY95939.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           meningitidis H44/76]
          Length = 769

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 467 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 521

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + ++   + 
Sbjct: 522 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKQPHC 570


>gi|259908936|ref|YP_002649292.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224964558|emb|CAX56071.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Erwinia
           pyrifoliae Ep1/96]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73
             L   + GQ +A   +  A++            +D     + L  GPTGVGKT ++ +L
Sbjct: 453 DRLKMLVFGQDNAIEVLTEAIK-----MSRAGLGQDRKPVGSFLFAGPTGVGKTEVTVQL 507

Query: 74  ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           A+  G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 508 AKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPH 557


>gi|167533167|ref|XP_001748264.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773384|gb|EDQ87025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 880

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ + KR +  A+    +R+   A       P+ ILL GP G  KT +++ LA  +
Sbjct: 616 EDIGGQTETKRQLIEAVEWPLKRRDDFARFGI-TPPRGILLYGPPGCSKTLMAKALATES 674

Query: 78  GAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRD 120
           G  FI V+  +     YVG +   V +  R     A  +V     D
Sbjct: 675 GLNFIAVKGPELF-SKYVGESERAVRETFRRARAAAPCVVFFDEID 719



 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 50  ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109
              P  +L+ GP G GKT ++R LAR  G   +  +VT    I  V    EQ I  L D 
Sbjct: 330 VRPPTGVLMTGPPGTGKTLLARTLARACGVHVVLADVTGL--ISRVAGETEQRITALFDE 387

Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFR 152
           A            R +A        +DAL    A + +    R
Sbjct: 388 A------------RSKAPSLVFIDEIDALCPNRAQAASELDRR 418


>gi|71895307|ref|NP_001026232.1| spastin [Gallus gallus]
 gi|82233831|sp|Q5ZK92|SPAST_CHICK RecName: Full=Spastin
 gi|53131842|emb|CAG31851.1| hypothetical protein RCJMB04_12e12 [Gallus gallus]
          Length = 613

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 339 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 396

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 397 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 427


>gi|88857985|ref|ZP_01132627.1| ATP-dependent protease, Hsp 100 [Pseudoalteromonas tunicata D2]
 gi|88819602|gb|EAR29415.1| ATP-dependent protease, Hsp 100 [Pseudoalteromonas tunicata D2]
          Length = 860

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT +
Sbjct: 561 KMEENLHTQVIGQDEAVTAVANAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           ++ LA          +++++++F E   V R V
Sbjct: 615 TKALATFLFDTEDAMVRIDMSEFMEKHSVARLV 647


>gi|332765573|gb|EGJ95786.1| ATP-dependent chaperone ClpB [Shigella flexneri 2930-71]
          Length = 798

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 503 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 557 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|329996080|ref|ZP_08302384.1| negative regulator of genetic competence ClpC/MecB [Klebsiella sp.
           MS 92-3]
 gi|328539505|gb|EGF65506.1| negative regulator of genetic competence ClpC/MecB [Klebsiella sp.
           MS 92-3]
          Length = 949

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 625 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 679

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 680 ALAESIYGDEHALLRIDMSEYGERHTVARLV 710


>gi|314932748|ref|ZP_07840117.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           caprae C87]
 gi|313654429|gb|EFS18182.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
           caprae C87]
          Length = 817

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHNRVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 43.4 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L+K + + I+T     ++ +  + +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLSKEELKEIVTM----MVKKLTDRLSEQNINISVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVTIDHD 797


>gi|312973164|ref|ZP_07787337.1| ATP-dependent chaperone ClpB [Escherichia coli 1827-70]
 gi|310333106|gb|EFQ00320.1| ATP-dependent chaperone ClpB [Escherichia coli 1827-70]
          Length = 798

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 503 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 557 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|302797795|ref|XP_002980658.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii]
 gi|300151664|gb|EFJ18309.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii]
          Length = 453

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK  LLVGP G GKT +++  A  AG PF+ +  + FTE+ +VG    ++ RDL   A
Sbjct: 19  RIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSRV-RDLFAQA 76


>gi|288956987|ref|YP_003447328.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
 gi|288909295|dbj|BAI70784.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp.
           B510]
          Length = 867

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT ++
Sbjct: 562 MEEKLRGRVIGQDEAIVAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 616 KALAEFLFDDETAMVRLDMSEYMEKHSVAR 645


>gi|298345554|ref|YP_003718241.1| chaperone ATPase [Mobiluncus curtisii ATCC 43063]
 gi|304391110|ref|ZP_07373062.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315656114|ref|ZP_07909005.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|298235615|gb|ADI66747.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
           curtisii ATCC 43063]
 gi|304325993|gb|EFL93239.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315493116|gb|EFU82716.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 884

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + IIGQ +A +AV+ ++R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 516 MEDELHKRIIGQDEAVKAVSQSIR------RTRAGLKDPKRPGGSFVFAGPTGVGKTELA 569

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          +++++++F+E            GYVG +
Sbjct: 570 KALAEFLFGDENALVQLDMSEFSEKHTASRLFGSPPGYVGYD 611


>gi|161506860|ref|YP_001576814.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|160347849|gb|ABX26523.1| Cell division protein [Lactobacillus helveticus DPC 4571]
          Length = 721

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT ++R +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 224 RIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVGVGASRV-RDLFNNA 281

Query: 111 INI 113
              
Sbjct: 282 KKN 284


>gi|161833637|ref|YP_001597833.1| putative ATP-dependent metalloprotease [Candidatus Sulcia muelleri
           GWSS]
 gi|152206126|gb|ABS30436.1| putative ATP-dependent metalloprotease [Candidatus Sulcia muelleri
           GWSS]
          Length = 624

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G +  K   + +   L++  +  +L   +     PK  LL+GP G GKT +++ +A
Sbjct: 189 KDVAGLEGPKEEIKEIVDFLKSPNKYTKLGGKI-----PKGALLIGPPGTGKTLLAKAVA 243

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             A  PF  +  + F E+ +VG    ++ RDL  +A
Sbjct: 244 GEAQVPFFSLSGSDFVEM-FVGVGASRV-RDLFYIA 277


>gi|149412391|ref|XP_001509194.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 572

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 298 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 355

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 356 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 386


>gi|146312713|ref|YP_001177787.1| protein disaggregation chaperone [Enterobacter sp. 638]
 gi|145319589|gb|ABP61736.1| ATPase AAA-2 domain protein [Enterobacter sp. 638]
          Length = 857

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEHDLHHRVIGQNEAVEAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647


>gi|126303140|ref|XP_001371504.1| PREDICTED: similar to spastin protein isoform 1 [Monodelphis
           domestica]
          Length = 619

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 345 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 402

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 403 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 433


>gi|332800110|ref|YP_004461609.1| ATPase AAA-2 domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332697845|gb|AEE92302.1| ATPase AAA-2 domain protein [Tepidanaerobacter sp. Re1]
          Length = 813

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A +AVA A+R  +      A L+D   P  + + +GPTGVGKT +
Sbjct: 498 KLEEVLHNRVIGQDEAVKAVAKAIRRAY------AGLKDPARPIGSFIFLGPTGVGKTEL 551

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA          I+++++++ E   V R V
Sbjct: 552 ARALADAMFGDEDAMIRLDMSEYMEKFAVSRIV 584


>gi|323173093|gb|EFZ58724.1| ATP-dependent chaperone ClpB [Escherichia coli LT-68]
 gi|332089246|gb|EGI94353.1| ATP-dependent chaperone ClpB [Shigella dysenteriae 155-74]
 gi|332091986|gb|EGI97064.1| ATP-dependent chaperone ClpB [Shigella boydii 3594-74]
          Length = 798

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 503 MEQELHHRVIGQNEAVDAVSNAIR------RSRAGLADPNRPIGSFLFLGPTGVGKTELC 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 557 KALANFMFDSDEAMVRIDMSEFMEKHSVSRLV 588


>gi|305678729|ref|YP_003864365.1| ClpK [Klebsiella pneumoniae]
 gi|223587487|gb|ACM92030.1| ClpK [Klebsiella pneumoniae]
          Length = 952

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGGKPVATFLFLGPTGVGKTELAK 661

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 662 ALAESIYGDEHALLRIDMSEYGERHTVARLV 692


>gi|301162241|emb|CBW21786.1| putative heat shock ClpB protein [Bacteroides fragilis 638R]
          Length = 862

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  AV+ A+R      +  A L+D   P  + + +G TGVGKT ++
Sbjct: 560 LEEELHQRVIGQDEAITAVSDAVR------RSRAGLQDPKRPIGSFIFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEFLFDDETMMTRIDMSEYQEKHSVSRLV 645


>gi|294630504|ref|ZP_06709064.1| ATP-dependent chaperone ClpB [Streptomyces sp. e14]
 gi|292833837|gb|EFF92186.1| ATP-dependent chaperone ClpB [Streptomyces sp. e14]
          Length = 865

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  E+ + +IGQ +A RAV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 566 MEDEIGKRLIGQGEAVRAVSDAV-----RRSRAGIADPDRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          +++++++++E   V R V
Sbjct: 621 ALADFLFDDERAMVRIDMSEYSEKHSVARLV 651


>gi|288929194|ref|ZP_06423039.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329296|gb|EFC67882.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 753

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   +   I GQ  A   V  A+      Q   A L +E  P   +L VGPTGVGKT ++
Sbjct: 448 LEKRMKELIYGQNQAVELVTQAI------QTAKAGLTEEGKPLAAMLFVGPTGVGKTEVA 501

Query: 71  RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           R LA   G   ++ +++++TE            GYVG     ++ D +    N 
Sbjct: 502 RVLATELGIELVRFDMSEYTEKHAVAKLIGSPAGYVGYEDGGLLTDAIRKTPNC 555


>gi|254281898|ref|ZP_04956866.1| ATP-dependent chaperone ClpB [gamma proteobacterium NOR51-B]
 gi|219678101|gb|EED34450.1| ATP-dependent chaperone ClpB [gamma proteobacterium NOR51-B]
          Length = 860

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLA 74
           L   ++GQ +A  AV+ A+R      +  A L D   P    L +GPTGVGKT + + LA
Sbjct: 566 LHERVVGQDEAVVAVSNAVR------RSRAGLSDPNRPNGSFLFLGPTGVGKTELCKSLA 619

Query: 75  RLA---GAPFIKVEVTKFTEIGYVGR 97
                     +++++++F E   V R
Sbjct: 620 EYLFDSEQAMVRIDMSEFMEKHSVAR 645


>gi|194398319|ref|YP_002038791.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
           pneumoniae G54]
 gi|194357986|gb|ACF56434.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae G54]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|168576066|ref|ZP_02721971.1| chaperone ClpB 1 [Streptococcus pneumoniae MLV-016]
 gi|307128461|ref|YP_003880492.1| chaperone ClpB 1 [Streptococcus pneumoniae 670-6B]
 gi|183578054|gb|EDT98582.1| chaperone ClpB 1 [Streptococcus pneumoniae MLV-016]
 gi|306485523|gb|ADM92392.1| chaperone ClpB 1 [Streptococcus pneumoniae 670-6B]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia]
          Length = 648

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 70/184 (38%), Gaps = 27/184 (14%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             ++G  + K  +      L+N  +     A L     PK ILLVGP G GKT ++R LA
Sbjct: 218 NDVLGIDEFKEELEEIVEFLKNPKKYTDSGAKL-----PKGILLVGPPGTGKTLLARALA 272

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV--REQASIN 129
             AG  F     ++F E+ +VG     V  I +     A +I+     D +  R +A   
Sbjct: 273 GEAGCAFFYKSGSEFDEM-FVGVGASRVRDIFKAARAKAPSIIFIDEIDSIGGRRRAQDP 331

Query: 130 AEER-----ILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
              R     IL  + G   T         N  +V    L+     DK I + + D     
Sbjct: 332 GYSRDTINQILTEMDGFKQTESVIVIGATNFEQVLDPALKRPGRFDKMIHVPLPDVKGRE 391

Query: 177 SNFD 180
             F 
Sbjct: 392 QIFS 395


>gi|12045316|ref|NP_073127.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|255660039|ref|ZP_05405448.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|1346047|sp|P47695|FTSH_MYCGE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3845051|gb|AAC72477.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|166078722|gb|ABY79340.1| ATP-dependent metalloprotease FtsH [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 702

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 20  IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76
           I G Q+ K  +      L+N  +  Q+ A       P+ ++L GP G GKT +++ +A  
Sbjct: 233 IAGLQEEKHELLEIVDYLKNPLKYAQMGA-----RSPRGVILYGPPGTGKTLLAKAVAGE 287

Query: 77  AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125
           AG PF +   + F +  +G   + V  +       A  I+     D V  +
Sbjct: 288 AGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSK 338


>gi|114332014|ref|YP_748236.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosomonas
           eutropha C91]
 gi|114309028|gb|ABI60271.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Nitrosomonas
           eutropha C91]
          Length = 756

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           + +  +L   + GQ  A  A+  A++                   + L  GPTGVGKT +
Sbjct: 449 KTLDRDLKAIVFGQDAAIDALTAAIK-----MARSGLGNTGKPIGSFLFSGPTGVGKTEV 503

Query: 70  SRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
           +R+LA + G P  + +++++ E   V R V
Sbjct: 504 ARQLAYILGIPLHRFDMSEYMERHAVSRLV 533


>gi|326386205|ref|ZP_08207829.1| membrane protease FtsH catalytic subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209430|gb|EGD60223.1| membrane protease FtsH catalytic subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 650

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G  +A+  +      LR+  R  +L   +     PK  LLVG  G GKT ++R +A
Sbjct: 163 DDVAGIDEAREELEEIVEFLRDPSRFSKLGGQI-----PKGALLVGSPGTGKTLLARAIA 217

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV 122
             AG PF  +  + F E+ +VG     V  +       A  IV     D V
Sbjct: 218 GEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQAKKNAPCIVFIDEIDAV 267


>gi|325144134|gb|EGC66441.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Neisseria
           meningitidis M01-240013]
          Length = 754

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 20/119 (16%)

Query: 10  REIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65
           ++++  LDR     + GQ++A  A+  A++              +    + L  GPTGVG
Sbjct: 447 KQVLQFLDRDLKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVG 501

Query: 66  KTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
           KT  +++LA   G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 502 KTEAAKQLAYSMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 560


>gi|298242789|ref|ZP_06966596.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555843|gb|EFH89707.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 843

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 21/101 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   +IGQ +A   ++ A+R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 504 QMEEALHSRVIGQNEAIEKISRAVR------RARAGLKDPKRPIGSFIFMGPTGVGKTEL 557

Query: 70  SRRLARLA---GAPFIKVEVTKFTE-----------IGYVG 96
           +R LA          IK+++++F E            GYVG
Sbjct: 558 ARTLAEFMFGSEEALIKIDMSEFMERHAAARLVGAPPGYVG 598


>gi|281207204|gb|EFA81387.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 701

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             ++G    K+++  A+     R  +   LR    PK +LL GP G GKT I++ +A  +
Sbjct: 430 DDVVGLDKVKQSLMEAVILPNLRPDVFVGLRSP--PKGLLLFGPPGNGKTMIAKAVAYES 487

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112
            A F  +  +  T   YVG   E+++R L  VA  
Sbjct: 488 KATFFSISASSLT-SKYVGEG-EKLVRALFAVAGY 520


>gi|323340852|ref|ZP_08081103.1| chaperone protein ClpB [Lactobacillus ruminis ATCC 25644]
 gi|323091703|gb|EFZ34324.1| chaperone protein ClpB [Lactobacillus ruminis ATCC 25644]
          Length = 868

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L   +IGQ +A  AVA A+       +  A L+D   P  + + +GPTGVGKT +++ 
Sbjct: 566 DTLHERVIGQDEAVEAVADAV------LRSRAGLQDPSKPLGSFMFLGPTGVGKTELAKA 619

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNVEQII 103
           LA          ++++++++ E   V R V    
Sbjct: 620 LAEDLFDSEKHMVRIDMSEYMEKASVSRLVGAAP 653


>gi|188584723|ref|YP_001916268.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|310946749|sp|B2A3Q4|FTSH_NATTJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|179349410|gb|ACB83680.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane
           protease FtsH catalytic subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 693

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +PK +LLVGP G GKT + R +A  AG PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 185 RIPKGVLLVGPPGTGKTLLGRAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA 242

Query: 111 INI 113
              
Sbjct: 243 KKN 245


>gi|152973457|ref|YP_001338508.1| ATPase with chaperone activity, ATP-binding subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|296104033|ref|YP_003614179.1| ATPase with chaperone activity [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|150958249|gb|ABR80278.1| ATPase with chaperone activity, ATP-binding subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|295058492|gb|ADF63230.1| ATPase with chaperone activity [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 931

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 661

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 662 ALAESIYGDEHALLRIDMSEYGERHTVARLV 692


>gi|148706482|gb|EDL38429.1| spastin, isoform CRA_b [Mus musculus]
          Length = 556

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 282 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 339

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 340 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 370


>gi|3360502|gb|AAC62621.1| heat shock protein [Leptolyngbya boryana]
          Length = 883

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 578 QLDDVLHQRVIGQDEAVTAVSDAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTEL 631

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++++++++ E   V R
Sbjct: 632 AKALAAFLFDTEEAMVRIDMSEYMEKHSVSR 662


>gi|328957330|ref|YP_004374716.1| chaperone protein ClpB [Carnobacterium sp. 17-4]
 gi|328673654|gb|AEB29700.1| chaperone protein ClpB [Carnobacterium sp. 17-4]
          Length = 880

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + + L   +IGQ +A ++V+ A+       +  A ++D   P  + L +GPTGVGKT ++
Sbjct: 578 LDTSLSERVIGQDEAVQSVSDAV------IRARAGIQDPNRPLGSFLFLGPTGVGKTELA 631

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 632 KALAENLFDSQDHMVRIDMSEYMEKHTVSR 661


>gi|307068805|ref|YP_003877771.1| ATPase [Streptococcus pneumoniae AP200]
 gi|306410342|gb|ADM85769.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
           pneumoniae AP200]
 gi|332198608|gb|EGJ12691.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA41317]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|300919756|ref|ZP_07136237.1| ATPase family protein [Escherichia coli MS 115-1]
 gi|300413192|gb|EFJ96502.1| ATPase family protein [Escherichia coli MS 115-1]
          Length = 905

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 661

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 662 ALAESIYGDEHALLRIDMSEYGERHTVARLV 692


>gi|297570833|ref|YP_003696607.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595]
 gi|296931180|gb|ADH91988.1| ATPase AAA-2 domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 873

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 28/256 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A  A++ A+R      +  A L+D   P    +  GPTGVGKT ++
Sbjct: 508 MEEELHKRVIGQSEAVTALSQAIR------RTRAGLKDPNRPGGSFIFAGPTGVGKTELA 561

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRE 116
           + LA          I +++++F E            GYVG +       L +        
Sbjct: 562 KALAEFLFGDEDALITLDMSEFQEKHTVSRLFGAPPGYVGYD---EGGQLTEKVRRKPFS 618

Query: 117 SRRDEVREQASINAEERILDALVGK--TATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174
               +  E+A  +    +L  L     T +      F+  +     +    DI     + 
Sbjct: 619 VVLFDEVEKAHQDLFNSLLQILEEGRLTDSQGRVVDFKNTVIIMTTNLGTKDIAKGVATG 678

Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234
              + D         L +++            ++   +   +P+L + E  +++D+    
Sbjct: 679 FQFDGDQTSSYERMKLRVNDELKNHFRPEFLNRVDDIIV--FPQLQKPEILQIVDLMIAK 736

Query: 235 RDSIQMVENYGIVFLD 250
             +    +  GIV  D
Sbjct: 737 LGARLADQGMGIVLTD 752


>gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
 gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
          Length = 698

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P+ +LL GP G GKT ++R +A  AG PF  +  + F E+ +VG    ++ RDL D A
Sbjct: 249 RIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASRV-RDLFDEA 306

Query: 111 INI 113
              
Sbjct: 307 KKN 309


>gi|223042918|ref|ZP_03612966.1| ATPase family associated with various cellular activities (AAA)
           protein [Staphylococcus capitis SK14]
 gi|222443772|gb|EEE49869.1| ATPase family associated with various cellular activities (AAA)
           protein [Staphylococcus capitis SK14]
          Length = 817

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHNRVIGQNDAVNSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLV 587



 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R    +    L+K + + I+T     ++ +  + +  + I +  T+ + + +A+ 
Sbjct: 699 PEFLNRVDDIIVFHKLSKEELKEIVTM----MVKKLTDRLSEQNINISVTDKAKEKIAEE 754

Query: 374 AVNLNSTVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
             +      + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 755 GYD-----PEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVTIDHD 797


>gi|168494045|ref|ZP_02718188.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC3059-06]
 gi|183575907|gb|EDT96435.1| chaperone ClpB 1 [Streptococcus pneumoniae CDC3059-06]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|165918374|ref|ZP_02218460.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 334]
 gi|165917880|gb|EDR36484.1| ATP-dependent chaperone ClpB [Coxiella burnetii RSA 334]
          Length = 859

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 564 METELHKRVIGQDEAVNAVANAIR------RSRAGLSDPNRPVGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|149003057|ref|ZP_01827966.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|149020113|ref|ZP_01835087.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|237650487|ref|ZP_04524739.1| chaperone ClpB 1 [Streptococcus pneumoniae CCRI 1974]
 gi|237822387|ref|ZP_04598232.1| chaperone ClpB 1 [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758798|gb|EDK65794.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147930791|gb|EDK81772.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP23-BS72]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|153207187|ref|ZP_01945966.1| ATP-dependent chaperone ClpB [Coxiella burnetii 'MSU Goat Q177']
 gi|212219427|ref|YP_002306214.1| ClpB [Coxiella burnetii CbuK_Q154]
 gi|120576848|gb|EAX33472.1| ATP-dependent chaperone ClpB [Coxiella burnetii 'MSU Goat Q177']
 gi|212013689|gb|ACJ21069.1| ClpB [Coxiella burnetii CbuK_Q154]
          Length = 859

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + +EL + +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 564 METELHKRVIGQDEAVNAVANAIR------RSRAGLSDPNRPVGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAAFLFDTEDAMVRIDMSEFMEKHSVAR 647


>gi|121595501|ref|YP_987397.1| ATPase [Acidovorax sp. JS42]
 gi|120607581|gb|ABM43321.1| ATPase AAA-2 domain protein [Acidovorax sp. JS42]
          Length = 867

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A  AVA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 564 MEEKLHERVVGQDEAISAVANAIR------RSRSGLSDPNRPLGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAGFLFDSEEHLVRIDMSEFMEKHSVAR 647


>gi|62858271|ref|NP_001016453.1| spastin [Xenopus (Silurana) tropicalis]
 gi|89272836|emb|CAJ82090.1| spastin [Xenopus (Silurana) tropicalis]
          Length = 571

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  + 
Sbjct: 298 DIAGQDLAKQALQEIVILPSIRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAESN 355

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           A F  +     T   YVG   E+++R L  VA
Sbjct: 356 ATFFNISAASLT-SKYVGEG-EKLVRALFSVA 385


>gi|54035749|sp|O87444|CLPB_PLEBO RecName: Full=Chaperone protein ClpB
          Length = 873

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A  AV+ A+      Q+  A L D   P  + + +GPTGVGKT +
Sbjct: 568 QLDDVLHQRVIGQDEAVTAVSDAI------QRSRAGLSDPNRPTASFIFLGPTGVGKTEL 621

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++++++++ E   V R
Sbjct: 622 AKALAAFLFDTEEAMVRIDMSEYMEKHSVSR 652


>gi|15902001|ref|NP_346605.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657990|ref|ZP_01408696.1| hypothetical protein SpneT_02000846 [Streptococcus pneumoniae
           TIGR4]
 gi|14973705|gb|AAK76245.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|302841005|ref|XP_002952048.1| hypothetical protein VOLCADRAFT_61948 [Volvox carteri f.
           nagariensis]
 gi|300262634|gb|EFJ46839.1| hypothetical protein VOLCADRAFT_61948 [Volvox carteri f.
           nagariensis]
          Length = 341

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 18/230 (7%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ+ AKR V   +       QL    R    P+ +LL GP G GKT I + +A    
Sbjct: 32  DIAGQEAAKRLVQEMVVWPMMNPQLFRGARAP--PRGLLLFGPPGTGKTLIGKAVAANIS 89

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR--------ESRRDEVREQASINA 130
           A F  +  +  T   ++G   E+++R L  +A  +          +S     + +    A
Sbjct: 90  ATFFSISASSLT-SKWIGEG-EKMVRALFALAGCLQPSVIFIDEIDSLLSARKAEGEHEA 147

Query: 131 EERI-LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI 189
             R+  + LV            R  +       +E+D              +P  A+   
Sbjct: 148 SRRLKTEMLVQMDGCDPGSGERRVLVIGATNRPEELDEAARRRMPKQLYIPLPCAAAR-- 205

Query: 190 LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239
               ++       G +    +S       + R       DM  + +++ Q
Sbjct: 206 ---HQMLMNAFRQGSEVSTSLSEADLAKIVDRTAGYSGSDMKNLIQEACQ 252


>gi|298490462|ref|YP_003720639.1| ATP-dependent chaperone ClpB ['Nostoc azollae' 0708]
 gi|298232380|gb|ADI63516.1| ATP-dependent chaperone ClpB ['Nostoc azollae' 0708]
          Length = 894

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++ S L   +IGQ++   AV+ A+R      +  A ++D   P  + L +GPTGVGKT +
Sbjct: 575 KLESYLHERVIGQEEGVSAVSAAIR------RARAGMKDPSRPIGSFLFMGPTGVGKTEL 628

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           +R LA+         ++++++++ E   V R V
Sbjct: 629 ARALAQFLFDSDDALLRLDMSEYMEKHSVSRLV 661


>gi|222111721|ref|YP_002553985.1| ATP-dependent chaperone clpb [Acidovorax ebreus TPSY]
 gi|221731165|gb|ACM33985.1| ATP-dependent chaperone ClpB [Acidovorax ebreus TPSY]
          Length = 867

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   ++GQ +A  AVA A+R      +  + L D   P  + L +GPTGVGKT + 
Sbjct: 564 MEEKLHERVVGQDEAISAVANAIR------RSRSGLSDPNRPLGSFLFLGPTGVGKTELC 617

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 618 KALAGFLFDSEEHLVRIDMSEFMEKHSVAR 647


>gi|15611341|ref|NP_222992.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|4154795|gb|AAD05852.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 550

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 44/260 (16%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LLVGP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLVGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEV-REQASINA 130
             A  PF     + F++I YVG     V ++       A +I+     D + + +    +
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGHRS 275

Query: 131 EER------ILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
           +ER      +L  + G            +N  EV  + L   +  D+ I I +       
Sbjct: 276 DEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLP------ 329

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                       +L    +  K++ + +     + + K            LI+   ++  
Sbjct: 330 -----------DLLERQSILEKLLENKKHALDYLKIAKICVGFSGAMLATLINESALNAL 378

Query: 237 SIQMVENYGIVFLDEFDKIV 256
             Q  E      L+  DKI 
Sbjct: 379 KHQRKEITHGDILEVKDKIA 398


>gi|66805423|ref|XP_636444.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60464819|gb|EAL62939.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 795

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 27/243 (11%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  EL   +IGQ +A  AV+ A+     R              + L +GPTGVGKT + 
Sbjct: 496 KMEDELGSQVIGQPEAVTAVSNAV-----RISRAGLHSHSRPLGSFLFLGPTGVGKTQLC 550

Query: 71  RRLARLA-GAP--FIKVEVTKFTEI-----------GYVGRN-----VEQIIRDLVDVAI 111
           R LA     +P   I+++++++ E            GYVG        E + R    + +
Sbjct: 551 RTLAEFMFDSPNALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVRRRPYSLVL 610

Query: 112 NIVRESRRDEVREQASINAEE-RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
               E    EV        ++  I D+   K    NT  +    L    +++   +   A
Sbjct: 611 FDEFEKAHKEVSNLLLQILDDGHITDSQGRKIDFRNTMVILTSNLGAEILANLPDNTPSA 670

Query: 171 DTSSDISNFDIPGGASVGILNLSEL--FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
               ++            +  + ++  F+++      K + + +      L        +
Sbjct: 671 TAREEVMGVVRSRFPPEFLNRIDDMILFNRLSRKDMDKIVEIQLDDLRKLLTEKHIALNV 730

Query: 229 DMD 231
             D
Sbjct: 731 KED 733


>gi|312866922|ref|ZP_07727135.1| chaperone protein ClpB [Streptococcus parasanguinis F0405]
 gi|311097705|gb|EFQ55936.1| chaperone protein ClpB [Streptococcus parasanguinis F0405]
          Length = 809

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+       ++    + + +GPTGVGKT +++
Sbjct: 505 LETELHKRVIGQDQAVSSISRAI-----RRNQSGIRSNKRPIGSFMFLGPTGVGKTELAK 559

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 560 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 598



 Score = 37.2 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373
           PE   R   +V   SL+  D + ++      ++      +  +G+ L F   ++  LA  
Sbjct: 702 PEFINRIDEKVVFHSLSSEDMQQVVK----VMVKPLIATLAEQGMTLKFQPSALKLLATK 757

Query: 374 AVNLNSTVGDIGARRLQTVM----ERVLEDISFSASDLQEKTVVI 414
             +      ++GAR L+ V+    E  L ++       + +T+ +
Sbjct: 758 GYD-----PEMGARPLRRVLQTEVEDQLAELLLKGQAQEGQTIKV 797


>gi|258508362|ref|YP_003171113.1| ATP-dependent chaperone ClpB [Lactobacillus rhamnosus GG]
 gi|257148289|emb|CAR87262.1| ATP-dependent chaperone ClpB [Lactobacillus rhamnosus GG]
 gi|259649676|dbj|BAI41838.1| Clp protease [Lactobacillus rhamnosus GG]
          Length = 868

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 566 DNLHQRVIGQDEAVTAVSDAV------LRSRAGLQDPSRPLGSFLFLGPTGVGKTELAKA 619

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNVEQII 103
           LA          ++++++++ E   V R V    
Sbjct: 620 LAEDLFDSEKHMVRIDMSEYMEKASVSRLVGAAP 653


>gi|254465877|ref|ZP_05079288.1| ATP-dependent chaperone ClpB [Rhodobacterales bacterium Y4I]
 gi|206686785|gb|EDZ47267.1| ATP-dependent chaperone ClpB [Rhodobacterales bacterium Y4I]
          Length = 872

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R +IGQ  A  AVA A+R      +  A L DE  P  + L +GPTGVGKT ++
Sbjct: 561 MEDELHRRVIGQNTAVTAVANAVR------RARAGLNDENRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + +A          ++++++++ E   V R
Sbjct: 615 KAVAGFLFDDEHAMVRIDMSEYMEKHSVAR 644


>gi|168489268|ref|ZP_02713467.1| ClpB protein [Streptococcus pneumoniae SP195]
 gi|221232896|ref|YP_002512050.1| stress response-related Clp ATPase [Streptococcus pneumoniae ATCC
           700669]
 gi|183572254|gb|EDT92782.1| ClpB protein [Streptococcus pneumoniae SP195]
 gi|220675358|emb|CAR69957.1| putative stress response-related Clp ATPase [Streptococcus
           pneumoniae ATCC 700669]
 gi|332071637|gb|EGI82130.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA17570]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|148988840|ref|ZP_01820255.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925651|gb|EDK76727.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|67970204|dbj|BAE01446.1| unnamed protein product [Macaca fascicularis]
          Length = 707

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L  +IIGQ+ A   V  A+R      +      DE  P   L +G +G+GKT +++
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIR------RKENGWYDEEHPLVFLFLGSSGIGKTELAK 392

Query: 72  RLARLAGAP----FIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           + A+         FI++++++F E            GYVG      +   +    N
Sbjct: 393 QTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPN 448


>gi|73980101|ref|XP_862831.1| PREDICTED: similar to spastin isoform 2 isoform 2 [Canis
           familiaris]
          Length = 592

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             I GQ+ AK+A+   +     R +L   LR     + +LL GP G GKT +++ +A  +
Sbjct: 318 DDIAGQELAKQALQEIVILPSLRPELFTGLRAP--ARGLLLFGPPGNGKTMLAKAVAAES 375

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A F  +     T   YVG   E+++R L  VA
Sbjct: 376 NATFFNISAASLT-SKYVGEG-EKLVRALFAVA 406


>gi|15676732|ref|NP_273877.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           meningitidis MC58]
 gi|7226070|gb|AAF41247.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria
           meningitidis MC58]
          Length = 769

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 467 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 521

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + ++   + 
Sbjct: 522 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKQPHC 570


>gi|22298932|ref|NP_682179.1| ClpB protein [Thermosynechococcus elongatus BP-1]
 gi|54035850|sp|Q8DJ40|CLPB1_THEEB RecName: Full=Chaperone protein ClpB 1
 gi|22295113|dbj|BAC08941.1| ClpB protein [Thermosynechococcus elongatus BP-1]
          Length = 871

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + ++GQ +A  AVA A+      Q+  A L D   P  + + +GPTGVGKT ++
Sbjct: 567 LEEELHKRVVGQDEAVSAVAEAI------QRSRAGLADPNRPIASFIFLGPTGVGKTELA 620

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 621 KALAAFMFDTEEALVRIDMSEYMEKHAVSR 650


>gi|302206981|gb|ADL11323.1| ATP-dependent chaperone protein ClpB [Corynebacterium
           pseudotuberculosis C231]
          Length = 849

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL   ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MESELGSRVVGQLEAVEAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA          ++++++++ E            GYVG +    + + V      V   
Sbjct: 618 ALAEFMFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTV--V 675

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 676 LFDEV-EKAHSDVFDILLQVL 695


>gi|300859293|ref|YP_003784276.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686747|gb|ADK29669.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331542|gb|ADL21736.1| ATP-dependent chaperone protein ClpB [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277232|gb|ADO27131.1| ATP-dependent chaperone protein ClpB [Corynebacterium
           pseudotuberculosis I19]
          Length = 849

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + SEL   ++GQ +A  AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 563 MESELGSRVVGQLEAVEAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 617

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRES 117
            LA          ++++++++ E            GYVG +    + + V      V   
Sbjct: 618 ALAEFMFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTV--V 675

Query: 118 RRDEVREQASINAEERILDAL 138
             DEV E+A  +  + +L  L
Sbjct: 676 LFDEV-EKAHSDVFDILLQVL 695


>gi|293191197|ref|ZP_06609130.1| negative regulator of genetic competence ClpC/MecB [Actinomyces
           odontolyticus F0309]
 gi|292820618|gb|EFF79587.1| negative regulator of genetic competence ClpC/MecB [Actinomyces
           odontolyticus F0309]
          Length = 826

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A +A+A ++R      +  + L+D   P    +  GPTGVGKT +
Sbjct: 516 KMEDELHKRVIGQDEAVKALAQSIR------RTRSGLKDPNRPGGSFIFAGPTGVGKTEL 569

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA          I++++++F+E            GYVG +
Sbjct: 570 AKALAEFLFGDEDALIQLDMSEFSEKHTASRLFGAPPGYVGYD 612


>gi|217967288|ref|YP_002352794.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336387|gb|ACK42180.1| ATPase AAA-2 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 894

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   ++GQ +A +AV+ A+     R                L +GPTGVGKT ++
Sbjct: 583 KLEEKLHERVVGQDEAIKAVSDAI-----RLARAGLREKNRPIATFLFLGPTGVGKTELA 637

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 638 RALAWAVFGDEDAIIRIDMSEYMERHTVSR 667


>gi|149012833|ref|ZP_01833778.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147763264|gb|EDK70203.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP19-BS75]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
           yoelii]
          Length = 703

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
           +PK ILL G  G GKT I+R +A  A  PFI+   ++F E+ +VG    +I R+L   A 
Sbjct: 283 LPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEM-FVGVGARRI-RELFQTAK 340

Query: 112 NI 113
             
Sbjct: 341 KH 342


>gi|332981035|ref|YP_004462476.1| ATPase AAA-2 domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332698713|gb|AEE95654.1| ATPase AAA-2 domain protein [Mahella australiensis 50-1 BON]
          Length = 815

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ +A  AVA A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 503 LEKILHERVIGQDEAVEAVAKAIR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 556

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           R LA          ++++++++ E   V R +  
Sbjct: 557 RALAEAMFGDENAMVRIDMSEYMEKYSVSRLIGS 590


>gi|319891481|ref|YP_004148356.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161177|gb|ADV04720.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
           regulator of genetic competence clcC/mecB
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465348|gb|ADX77501.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
           pseudintermedius ED99]
          Length = 819

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ DA  A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEDTLHERVIGQNDAVIAISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAEAMFGEEDAMIRVDMSEFMEKHAVSRLV 587



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 96/283 (33%), Gaps = 50/283 (17%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D    I +F   G   VG   L+   ++ M       IR+ + +    + +    RL+
Sbjct: 531 LKDPKRPIGSFIFLGPTGVGKTELARALAEAMFGEEDAMIRVDMSE---FMEKHAVSRLV 587

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     D          + Y ++  DE +K         +   D G+        V
Sbjct: 588 GAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRV 647

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL-------------PEIQG 318
                 ++  S+V    G+       F   G     +  + +             PE   
Sbjct: 648 DFRNTVIIMTSNV----GAQELQDQRFAGFGGSSEGQDYETIRKTMMKELKSAFRPEFLN 703

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R    +    LNK + + I+T     ++ +    +  + I +  TE + D +A+   +  
Sbjct: 704 RVDDTIVFHKLNKDELKEIVTM----MVGKLTSRLSEQNINVRVTEAAKDKIAEEGYD-- 757

Query: 379 STVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
               + GAR L + +   +E  L ++     +L+ K V +D +
Sbjct: 758 ---PEYGARPLIRAIQKTVEDNLSELILEGKELEGKNVTVDYD 797


>gi|308827063|emb|CBX33349.1| putative ATPase with chaperone activity, clpB [Cronobacter
           sakazakii]
          Length = 949

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 661

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 662 ALAESIYGDEHALLRIDMSEYGERHTVARLV 692


>gi|307705869|ref|ZP_07642707.1| chaperone clpB 1 [Streptococcus mitis SK597]
 gi|307620530|gb|EFN99628.1| chaperone clpB 1 [Streptococcus mitis SK597]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|306828654|ref|ZP_07461847.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           mitis ATCC 6249]
 gi|304429160|gb|EFM32247.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           mitis ATCC 6249]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|301795107|emb|CBW37577.1| putative stress response-related Clp ATPase [Streptococcus
           pneumoniae INV104]
 gi|332199016|gb|EGJ13097.1| ATPase associated with various cellular activities family protein
           [Streptococcus pneumoniae GA47901]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|296447416|ref|ZP_06889341.1| ATP-dependent chaperone ClpB [Methylosinus trichosporium OB3b]
 gi|296255036|gb|EFH02138.1| ATP-dependent chaperone ClpB [Methylosinus trichosporium OB3b]
          Length = 871

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R ++GQ++A  AV+ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 562 MEDELARRVVGQKEAVAAVSTAVR------RARAGLQDPNRPIGSFIFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          ++++++++ E   V R
Sbjct: 616 KALASFLFDDETAMVRLDMSEYMEKHSVAR 645


>gi|270291142|ref|ZP_06197365.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
           acidilactici 7_4]
 gi|270280538|gb|EFA26373.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
           acidilactici 7_4]
          Length = 823

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK + +     +   L  ++IGQ +A  +VA A+     R+        +    + + +G
Sbjct: 498 MKQSESERLVNLEKILHEHVIGQDEAVSSVARAI-----RRARSGLKNPKRPIGSFMFLG 552

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           PTGVGKT +++ LA +        I+++++++ E            GYVG +
Sbjct: 553 PTGVGKTELAKTLANVMFGSEDNMIRIDMSEYMERFSTSRLVGSAPGYVGYD 604


>gi|255528348|ref|ZP_05395154.1| ATP-dependent chaperone ClpB [Clostridium carboxidivorans P7]
 gi|296185567|ref|ZP_06853976.1| ATP-dependent chaperone protein ClpB [Clostridium carboxidivorans
           P7]
 gi|255507958|gb|EET84392.1| ATP-dependent chaperone ClpB [Clostridium carboxidivorans P7]
 gi|296049695|gb|EFG89120.1| ATP-dependent chaperone protein ClpB [Clostridium carboxidivorans
           P7]
          Length = 870

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 97/257 (37%), Gaps = 52/257 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + SEL + +IGQ++A  AV+ A+       +  A ++D   P  + + +GPTGVGKT ++
Sbjct: 568 LESELSQRVIGQKEAITAVSNAV------IRARAGMKDPKRPIGSFIFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-------------------- 96
           + LAR         ++++++++ E            GYVG                    
Sbjct: 622 KTLARTLFDSEENIVRIDMSEYMEKYSVSRLIGAPPGYVGYEEGGQLTEAVRRNPYSVIL 681

Query: 97  -RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL-------DALVGKTATSNTR 148
              +E+   D+ ++ + I+ + R  + + +        I+         L+     S   
Sbjct: 682 FDEIEKAHDDVFNIFLQILDDGRLTDNQGKVIDFKNCIIIMTSNIGSSYLLENKEISGVE 741

Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208
           +  R ++     S  + +        D      P         +S     +    ++K I
Sbjct: 742 QHIRDRVMSEMKSRFKPEF---LNRLDDIILFKPLSTEEIKDIISIFIEDIRKRLKEKNI 798

Query: 209 RMSVQKCYPELMRDESD 225
            + + +   +LM +E  
Sbjct: 799 SLKITEAAKKLMAEEGY 815


>gi|229552157|ref|ZP_04440882.1| S14 family endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|258539571|ref|YP_003174070.1| ATP-dependent chaperone ClpB [Lactobacillus rhamnosus Lc 705]
 gi|229314459|gb|EEN80432.1| S14 family endopeptidase Clp [Lactobacillus rhamnosus LMS2-1]
 gi|257151247|emb|CAR90219.1| ATP-dependent chaperone ClpB [Lactobacillus rhamnosus Lc 705]
          Length = 868

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 14  SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72
             L + +IGQ +A  AV+ A+       +  A L+D   P  + L +GPTGVGKT +++ 
Sbjct: 566 DNLHQRVIGQDEAVTAVSDAV------LRSRAGLQDPSRPLGSFLFLGPTGVGKTELAKA 619

Query: 73  LARLA---GAPFIKVEVTKFTEIGYVGRNVEQII 103
           LA          ++++++++ E   V R V    
Sbjct: 620 LAEDLFDSEKHMVRIDMSEYMEKASVSRLVGAAP 653


>gi|153008374|ref|YP_001369589.1| ATPase [Ochrobactrum anthropi ATCC 49188]
 gi|151560262|gb|ABS13760.1| ATPase AAA-2 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 873

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL + +IGQ +A +A++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 562 MEDELAKRVIGQGEAVQAISKAVR------RARAGLQDPNRPIGSFIFLGPTGVGKTELT 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           + LA          +++++++F E   V R
Sbjct: 616 KALAAFLFQDDTAMVRIDMSEFMEKHSVSR 645


>gi|148984497|ref|ZP_01817785.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147923274|gb|EDK74388.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800930|emb|CBW33589.1| putative stress response-related Clp ATPase [Streptococcus
           pneumoniae OXC141]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDEESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|116516069|ref|YP_817407.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae D39]
 gi|116076645|gb|ABJ54365.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
           pneumoniae D39]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|328771926|gb|EGF81965.1| hypothetical protein BATDEDRAFT_31536 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 898

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 24/138 (17%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + ++GQ  A +AVA A+       +  A L       + L +GPTGVGKT +++ LA 
Sbjct: 576 LHKRVVGQDKAVKAVADAV------LRSRAGLSGSGTIGSFLFLGPTGVGKTELAKTLAH 629

Query: 76  LA----GAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRD 120
                     ++++++++ E            GYVG +    + + V      V     D
Sbjct: 630 ELFDDDKKGLLRIDMSEYMEQHSVARLIGAPPGYVGFDEGGQLTESVRRHPYCV--ILFD 687

Query: 121 EVREQASINAEERILDAL 138
           E+ E+A       +L  L
Sbjct: 688 EI-EKAHTQVLNILLQVL 704


>gi|312880251|ref|ZP_07740051.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260]
 gi|310783542|gb|EFQ23940.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260]
          Length = 872

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + ++GQ +A R V  A+       +  + L+D   P  + L +GPTGVGKT ++
Sbjct: 570 LEEILHQRVVGQDEAVRLVTDAV------LRARSGLKDPRRPIGSFLFLGPTGVGKTELA 623

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA+         ++++++++ E   V R
Sbjct: 624 RTLAQALFDSEENLVRLDMSEYMEKHSVSR 653


>gi|308048519|ref|YP_003912085.1| ATP-dependent chaperone ClpB [Ferrimonas balearica DSM 9799]
 gi|307630709|gb|ADN75011.1| ATP-dependent chaperone ClpB [Ferrimonas balearica DSM 9799]
          Length = 857

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L R ++GQ +A  AV+ A+R      +  A L D   P  + L +GPTGVGKT +S
Sbjct: 562 MEEALHRRVVGQDEAVDAVSNAIR------RSRAGLSDPNRPIGSFLFLGPTGVGKTELS 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KALAHFMFDSADAMVRIDMSEFMEKHSVARLV 647


>gi|240127804|ref|ZP_04740465.1| ClpA [Neisseria gonorrhoeae SK-93-1035]
 gi|268686200|ref|ZP_06153062.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-93-1035]
 gi|268626484|gb|EEZ58884.1| ATP-dependent Clp protease [Neisseria gonorrhoeae SK-93-1035]
          Length = 762

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L   + GQ++A  A+  A++              +    + L  GPTGVGKT ++++LA 
Sbjct: 460 LKNMVYGQENAIDALVAAVK-----MSRSGLALPDKPIGSFLFSGPTGVGKTEVAKQLAY 514

Query: 76  LAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINI 113
             G P  + +++++ E            GYVG     ++ + V+   + 
Sbjct: 515 SMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC 563


>gi|206900106|ref|YP_002250615.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739209|gb|ACI18267.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 894

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70
           ++  +L   ++GQ +A +AV+ A+     R                L +GPTGVGKT ++
Sbjct: 583 KLEEKLHERVVGQDEAIKAVSDAI-----RLARAGLREKNRPIATFLFLGPTGVGKTELA 637

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 638 RALAWAVFGDEDAIIRIDMSEYMERHTVSR 667


>gi|167377096|ref|XP_001734281.1| vacuolar protein sorting-associating protein 4A [Entamoeba dispar
           SAW760]
 gi|165904312|gb|EDR29570.1| vacuolar protein sorting-associating protein 4A, putative
           [Entamoeba dispar SAW760]
          Length = 419

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IG + AK A+  A+    +  QL  D R       ILL GP G GK+ +++ +A  A
Sbjct: 111 EDVIGLEKAKEALQEAVILPIKFPQLFTDKRKPWT--GILLFGPPGTGKSFLAKAVATEA 168

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +      Y+G + E+++++L + A
Sbjct: 169 DSTFYSVSASSLL-SKYLGES-EKMVKELFETA 199


>gi|67477198|ref|XP_654105.1| vacuolar sorting protein VPS4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471127|gb|EAL48719.1| vacuolar sorting protein VPS4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 419

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 18  RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77
             +IG + AK A+  A+    +  QL  D R       ILL GP G GK+ +++ +A  A
Sbjct: 111 EDVIGLEKAKEALQEAVILPIKFPQLFTDKRKPWT--GILLFGPPGTGKSFLAKAVATEA 168

Query: 78  GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            + F  V  +      Y+G + E+++++L + A
Sbjct: 169 DSTFYSVSASSLL-SKYLGES-EKMVKELFETA 199


>gi|325125153|gb|ADY84483.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 737

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 43/226 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 220 RIPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEM-FVGVGASRV-RDLFTNA 277

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                       ++ A        +DA+             RK+      S+ E +  + 
Sbjct: 278 ------------KKNAPSIIFIDEIDAIG------------RKRGNGQGGSNDEREQTLN 313

Query: 171 DTSSDISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  F+   G   +   N S++    +    +   ++ V                 
Sbjct: 314 QMLVEMDGFEGDEGVIVMAATNRSDVLDPALTRPGRFDRKVLVGP--------------- 358

Query: 230 MDTVHRDSIQMVENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRD 274
            D   R++I  V        D+ D K VAR +   +G   E V  +
Sbjct: 359 PDVKGREAILRVHAKNKPLADDVDLKEVARQTPGFVGADLENVLNE 404


>gi|326423944|ref|NP_760981.2| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           vulnificus CMCP6]
 gi|319999323|gb|AAO10508.2| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           vulnificus CMCP6]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 20/120 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ  A   +  A++             +     + L  GPTG
Sbjct: 449 SDKDILKSLDDKMKMLVFGQDAAIDVLCEAIK-----LSRAGLGAENKPVGSFLFAGPTG 503

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 563


>gi|320155837|ref|YP_004188216.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           vulnificus MO6-24/O]
 gi|319931149|gb|ADV86013.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           vulnificus MO6-24/O]
          Length = 758

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 20/120 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD      + GQ  A   +  A++             +     + L  GPTG
Sbjct: 449 SDKDILKSLDDKMKMLVFGQDAAIDVLCEAIK-----LSRAGLGAENKPVGSFLFAGPTG 503

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 504 VGKTEVTVQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 563


>gi|307702569|ref|ZP_07639521.1| clpC [Streptococcus oralis ATCC 35037]
 gi|307623685|gb|EFO02670.1| clpC [Streptococcus oralis ATCC 35037]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|270291875|ref|ZP_06198090.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. M143]
 gi|270279403|gb|EFA25245.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. M143]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|257125522|ref|YP_003163636.1| ATP-dependent metalloprotease FtsH [Leptotrichia buccalis C-1013-b]
 gi|310943136|sp|C7N914|FTSH_LEPBD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257049461|gb|ACV38645.1| ATP-dependent metalloprotease FtsH [Leptotrichia buccalis C-1013-b]
          Length = 768

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK   R V   L+N  +  +  A      +PK +LL+G  G GKT +++ +A
Sbjct: 198 DDVAGVDGAKEELREVVDFLKNPEKYTKAGA-----RVPKGVLLLGRPGTGKTLLAKAVA 252

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +GA F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 253 GESGASFFSISGSEFVEM-FVGVGASRV-RDLFEKA 286


>gi|228475267|ref|ZP_04059992.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           hominis SK119]
 gi|228270732|gb|EEK12141.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
           hominis SK119]
          Length = 823

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L   +IGQ DA  +++ A+R      +  A L+D   P  + + +GPTGVGKT ++
Sbjct: 502 LEETLHDRVIGQNDAVTSISKAVR------RARAGLKDPKRPIGSFIFLGPTGVGKTELA 555

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           R LA          I+V++++F E   V R V
Sbjct: 556 RALAESMFGEEDAMIRVDMSEFMEKHAVSRLV 587



 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 50/283 (17%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           + D    I +F   G   VG   L+   ++ M       IR+ + +    + +    RL+
Sbjct: 531 LKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSE---FMEKHAVSRLV 587

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     D          + Y ++  DE +K         +   D G+        V
Sbjct: 588 GAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQV 647

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL-------------PEIQG 318
                 ++  S+V    G+       F   G     +  + +             PE   
Sbjct: 648 DFRNTVIIMTSNV----GAQELQDQRFAGFGGASEGQDYETIRKTMMKELKNSFRPEFLN 703

Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378
           R    +    L K + + I+T   + L  +    +  + I +  T+ + + +A+   +  
Sbjct: 704 RVDDIIVFHKLTKDELKEIVTMMVNKLTKR----LSEQDINIVVTDKAKEKIAEEGYD-- 757

Query: 379 STVGDIGARRL-QTV---MERVLEDISFSASDLQEKTVVIDAE 417
               + GAR L + +   +E  L ++    + ++ K V ID +
Sbjct: 758 ---PEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVTIDHD 797


>gi|170783529|ref|YP_001742022.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1]
 gi|150035016|gb|ABR67027.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1]
          Length = 676

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             PK +LL GP G GKT ++R  A  AG PF  +  ++F E+  VG    ++ R+L   A
Sbjct: 253 RPPKGVLLSGPPGTGKTLLARATAGEAGVPFFHISSSEFIEM-VVGVGASRV-RELFQAA 310


>gi|327483848|gb|AEA78255.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae LMA3894-4]
          Length = 732

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD+     + GQ  A   +  A++             +     + L  GPTG
Sbjct: 423 SDKDILKNLDQKMKMLVFGQDAAIDVLTEAIK-----LTRAGLGAEHKPVGSFLFAGPTG 477

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 478 VGKTEVTLQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 537

Query: 113 I 113
            
Sbjct: 538 S 538


>gi|315612206|ref|ZP_07887120.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis ATCC 49296]
 gi|315315599|gb|EFU63637.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptococcus
           sanguinis ATCC 49296]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|311067883|ref|YP_003972806.1| ATP-dependent Clp protease [Bacillus atrophaeus 1942]
 gi|310868400|gb|ADP31875.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           atrophaeus 1942]
          Length = 700

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 19/103 (18%)

Query: 10  REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69
           +E+ ++L   +IGQ+ A + VA A+     R+               L VGPTGVGKT +
Sbjct: 402 KELEAKLHERVIGQEAAVQKVAKAV-----RRSRAGLKSKNRPVGTFLFVGPTGVGKTEL 456

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           S+ LA          I+++++++ E            GYVG +
Sbjct: 457 SKTLADELFGTKDSIIRLDMSEYMEKHAVSKIIGSPPGYVGHD 499



 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 36/276 (13%)

Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228
           +   +  +  F   G   VG   LS+  +  +   +   IR+ + +    + +    ++I
Sbjct: 433 LKSKNRPVGTFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSE---YMEKHAVSKII 489

Query: 229 --------DMDTVHRDSIQMVENYGIVFLDEFDK---------IVARDSGNGIGVSREGV 271
                     +            Y IV LDE +K         +   + G         V
Sbjct: 490 GSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 549

Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILF---IASGAFHVSRPADLLPEIQGRFPVRVHLKS 328
                 ++  S+  T    +          I       S      PE   RF   +   +
Sbjct: 550 SFKDTVIIMTSNAGTGEKQVKVGFQSEESAIKEQTLIDSLSMFFKPEFLNRFDSIIEFHA 609

Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388
           L K     I+T   S L    +E +    I L  T ++ + +A++  +        GAR 
Sbjct: 610 LQKEHLVKIVTLLLSEL----EETLAEREIDLHVTNEAKEKIAELGYH-----PAFGARP 660

Query: 389 L-QTVMERV---LEDISFSASDLQEKTVVIDAEYVR 420
           L +T+ E +   + D+    S ++   V+++   ++
Sbjct: 661 LRRTIQESIEDEMTDLLLEDSHIKGFNVIVEDNSIK 696


>gi|304385424|ref|ZP_07367769.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
           acidilactici DSM 20284]
 gi|304328631|gb|EFL95852.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
           acidilactici DSM 20284]
          Length = 823

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 19/112 (16%)

Query: 1   MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60
           MK + +     +   L  ++IGQ +A  +VA A+     R+        +    + + +G
Sbjct: 498 MKQSESERLVNLEKILHEHVIGQDEAVSSVARAI-----RRARSGLKNPKRPIGSFMFLG 552

Query: 61  PTGVGKTAISRRLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
           PTGVGKT +++ LA +        I+++++++ E            GYVG +
Sbjct: 553 PTGVGKTELAKTLANVMFGSEDNMIRIDMSEYMERFSTSRLVGSAPGYVGYD 604


>gi|312141323|ref|YP_004008659.1| clp peptidase ATP-binding subunit clpb [Rhodococcus equi 103S]
 gi|325673839|ref|ZP_08153529.1| chaperone protein ClpB [Rhodococcus equi ATCC 33707]
 gi|311890662|emb|CBH49981.1| putative Clp peptidase ATP-binding subunit ClpB [Rhodococcus equi
           103S]
 gi|325555104|gb|EGD24776.1| chaperone protein ClpB [Rhodococcus equi ATCC 33707]
          Length = 850

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + ++GQ +A +AV+ A+     R+             + L +GPTGVGKT +++
Sbjct: 566 METELAKRVVGQTEAVQAVSDAV-----RRARAGVADPNRPTGSFLFLGPTGVGKTELAK 620

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
            LA          +++++++++E   V R V      +   +   + E+ R  
Sbjct: 621 GLADFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYESGGQLTEAVRRR 673


>gi|256820686|ref|YP_003141965.1| ATP-dependent chaperone ClpB [Capnocytophaga ochracea DSM 7271]
 gi|315223810|ref|ZP_07865659.1| chaperone protein ClpB [Capnocytophaga ochracea F0287]
 gi|256582269|gb|ACU93404.1| ATP-dependent chaperone ClpB [Capnocytophaga ochracea DSM 7271]
 gi|314946256|gb|EFS98256.1| chaperone protein ClpB [Capnocytophaga ochracea F0287]
          Length = 868

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL R ++GQ++A  AV+ A+R      +  A L+D   P  + L +G TGVGKT ++
Sbjct: 560 LEKELHRRVVGQEEAIEAVSDAIR------RSRAGLQDPRRPIGSFLFLGTTGVGKTELA 613

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA           +++++++ E   V R V
Sbjct: 614 KALAEYLFDDENAMTRIDMSEYQEKHAVSRLV 645


>gi|124514865|gb|EAY56376.1| Peptidase M41, FtsH [Leptospirillum rubarum]
          Length = 599

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV- 109
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL +  
Sbjct: 184 RIPKGVLVVGPPGTGKTLLAKAIAGEADVPFYHISGSDFVEM-FVGVGASRV-RDLFEQG 241

Query: 110 ---AINIVRESRRDEV 122
              A  I+     D V
Sbjct: 242 KKNAPCIIFIDEIDAV 257


>gi|104773522|ref|YP_618502.1| cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422603|emb|CAI97206.1| Cell division protein FtsH [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 737

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 43/226 (19%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            +P  +LL GP G GKT +++ +A  AG PF  +  + F E+ +VG    ++ RDL   A
Sbjct: 220 RIPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFYISGSDFVEM-FVGVGASRV-RDLFTNA 277

Query: 111 INIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170
                       ++ A        +DA+             RK+      S+ E +  + 
Sbjct: 278 ------------KKNAPSIIFIDEIDAIG------------RKRGNGQGGSNDEREQTLN 313

Query: 171 DTSSDISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
               ++  F+   G   +   N S++    +    +   ++ V                 
Sbjct: 314 QMLVEMDGFEGDEGVIVMAATNRSDVLDPALTRPGRFDRKVLVGP--------------- 358

Query: 230 MDTVHRDSIQMVENYGIVFLDEFD-KIVARDSGNGIGVSREGVQRD 274
            D   R++I  V        D+ D K VAR +   +G   E V  +
Sbjct: 359 PDVKGREAILRVHAKNKPLADDVDLKEVARQTPGFVGADLENVLNE 404


>gi|88607892|ref|YP_504852.1| ATP-dependent chaperone protein ClpB [Anaplasma phagocytophilum HZ]
 gi|88598955|gb|ABD44425.1| ATP-dependent chaperone protein ClpB [Anaplasma phagocytophilum HZ]
          Length = 859

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ  A  AV+ A+     R+        +    + L +GPTGVGKT +++
Sbjct: 562 MEEELKKTVIGQDSAVAAVSNAV-----RRSRAGVQDAQRPMGSFLFLGPTGVGKTELTK 616

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGR 97
            L++      +  ++ ++++F E   V +
Sbjct: 617 ALSKFLFDSSSALLRFDMSEFMEKHSVAK 645


>gi|78779330|ref|YP_397442.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712829|gb|ABB50006.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
          Length = 584

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVD 108
           +PK +LL+GP G GKT +++ +A  +G PF+ +  ++F E+ +VG     V ++     +
Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASRVRELFFKAKE 224

Query: 109 VAINIVRESRRDEV 122
            +  I+     D +
Sbjct: 225 KSPCIIFIDEIDSI 238


>gi|322377948|ref|ZP_08052436.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. M334]
 gi|321281124|gb|EFX58136.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. M334]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|322375169|ref|ZP_08049683.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. C300]
 gi|321280669|gb|EFX57708.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptococcus
           sp. C300]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           + +EL + +IGQ  A  +++ A+     R+        +    + + +GPTGVGKT +++
Sbjct: 506 LEAELHKRVIGQDQAVSSISRAI-----RRNQSGIRSHKRPIGSFMFLGPTGVGKTELAK 560

Query: 72  RLARLA---GAPFIKVEVTKFTEI-----------GYVG 96
            LA +     +  I+ +++++ E            GYVG
Sbjct: 561 ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVG 599


>gi|313905488|ref|ZP_07838852.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313469672|gb|EFR65010.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 655

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 19  YIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G Q+ K     +   L+N  +  ++ A +     PK ++LVG  G GKT +++ +A 
Sbjct: 164 DVAGLQEEKEDLVEIVDFLKNPGKYTRVGARI-----PKGVILVGRPGTGKTLLAKAVAG 218

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113
            A  PF  +  + F E+ +VG    ++ RDL   A   
Sbjct: 219 EADVPFFSISGSDFVEM-FVGVGASRV-RDLFAEAKKN 254


>gi|291543530|emb|CBL16639.1| ATP-dependent chaperone ClpB [Ruminococcus sp. 18P13]
          Length = 868

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 21/102 (20%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S L + +IGQ +A   V+ A+       +  A ++D   P  + L +GPTGVGKT ++
Sbjct: 568 MESILHQRVIGQDEAVEKVSEAI------LRSRAGIQDPDRPIGSFLFLGPTGVGKTELA 621

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           + LA          ++++++++ E            GYVG +
Sbjct: 622 KALAEALFDDERNIVRIDMSEYMEKYSVSRLIGAPPGYVGYD 663


>gi|254820195|ref|ZP_05225196.1| chaperone ClpB [Mycobacterium intracellulare ATCC 13950]
          Length = 848

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + +IGQ+ A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEDELGKRVIGQRKAVTAVSDAV-----RRARAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|254037321|ref|ZP_04871398.1| ATPase with chaperone activity [Escherichia sp. 1_1_43]
 gi|226840427|gb|EEH72429.1| ATPase with chaperone activity [Escherichia sp. 1_1_43]
          Length = 949

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ +A RAVA A+     R                L +GPTGVGKT +++
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAV-----RLSRAGLREGSKPVATFLFLGPTGVGKTELAK 661

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 662 ALAESIYGDEHALLRIDMSEYGERHTVARLV 692


>gi|237844597|ref|XP_002371596.1| chaperone clpB 1 protein, putative [Toxoplasma gondii ME49]
 gi|211969260|gb|EEB04456.1| chaperone clpB 1 protein, putative [Toxoplasma gondii ME49]
          Length = 898

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + 
Sbjct: 720 LEKDLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELC 773

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA L        +K++++++ E   + R
Sbjct: 774 RSLAELMFDSEDAMVKIDMSEYMEKHTISR 803


>gi|206603944|gb|EDZ40424.1| Peptidase M41, FtsH [Leptospirillum sp. Group II '5-way CG']
          Length = 592

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 51  LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV- 109
            +PK +L+VGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL +  
Sbjct: 177 RIPKGVLVVGPPGTGKTLLAKAIAGEADVPFYHISGSDFVEM-FVGVGASRV-RDLFEQG 234

Query: 110 ---AINIVRESRRDEV 122
              A  I+     D V
Sbjct: 235 KKNAPCIIFIDEIDAV 250


>gi|189241721|ref|XP_968780.2| PREDICTED: similar to aaa atpase [Tribolium castaneum]
          Length = 841

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I G + AK A+  A+     R  +   LR    PK ILL GP G GKT I + +A  + 
Sbjct: 569 DIAGLEFAKTAIQEAVVWPMLRPDIFTGLRRP--PKGILLFGPPGTGKTLIGKCVAAQSK 626

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-----------SRRDEVREQAS 127
           + F  +  +  T   ++G   E+++R L  VA                  +R+E   ++S
Sbjct: 627 STFFSISASSLT-SKWIGDG-EKMVRALFAVARCHQPAVIFIDEIDSLLCQRNETEHESS 684

Query: 128 INAEERILDALVGKTATSNTR 148
              +   L  L G T  S  R
Sbjct: 685 RRIKTEFLVQLDGATTDSEER 705


>gi|17862380|gb|AAL39667.1| LD23843p [Drosophila melanogaster]
          Length = 551

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            I GQ  AK+A+   +     R +L   LR     K +LL GP G GKT ++R +A    
Sbjct: 277 DIAGQDVAKQALQEMVILPSVRPELFTGLRAP--AKGLLLFGPPGNGKTLLARAVATECS 334

Query: 79  APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114
           A F+ +     T   YVG   E+++R L  VA ++ 
Sbjct: 335 ATFLNISAASLT-SKYVGDG-EKLVRALFAVARHMQ 368


>gi|312135307|ref|YP_004002645.1| ATP-dependent chaperone clpb [Caldicellulosiruptor owensensis OL]
 gi|311775358|gb|ADQ04845.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor owensensis OL]
          Length = 864

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           E+   L + ++GQ +A  AV  A+       +  A ++D   P    L +GPTGVGKT +
Sbjct: 566 ELDKILHKRVVGQDEAIEAVCNAI------MRARAGIKDPRKPIGTFLFLGPTGVGKTEL 619

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           +R LA          I++++T++ E   V R
Sbjct: 620 ARALAEALFDSENNMIRIDMTEYMEKHSVSR 650


>gi|260889221|ref|ZP_05900484.1| cell division protein FtsH [Leptotrichia hofstadii F0254]
 gi|260861281|gb|EEX75781.1| cell division protein FtsH [Leptotrichia hofstadii F0254]
          Length = 627

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 18  RYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             + G   AK   R V   L+N  +  +  A      +PK +LL+G  G GKT +++ +A
Sbjct: 44  DDVAGVDGAKEELREVVDFLKNPEKYTKAGA-----RVPKGVLLLGRPGTGKTLLAKAVA 98

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
             +GA F  +  ++F E+ +VG    ++ RDL + A
Sbjct: 99  GESGASFFSISGSEFVEM-FVGVGASRV-RDLFEKA 132


>gi|257068431|ref|YP_003154686.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
 gi|256559249|gb|ACU85096.1| ATPase with chaperone activity, ATP-binding subunit
           [Brachybacterium faecium DSM 4810]
          Length = 881

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   +   +IGQQ A R V+ A+     R+             + L +GPTGVGKT +++
Sbjct: 570 MEEHIGTRLIGQQRAVREVSDAV-----RRARAGISDPNRPTGSFLFLGPTGVGKTELAK 624

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          I+++++++ E   V R V
Sbjct: 625 ALAEFLFDDERAMIRIDMSEYGEKHTVSRLV 655


>gi|229520426|ref|ZP_04409851.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae TM 11079-80]
 gi|229342524|gb|EEO07517.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae TM 11079-80]
          Length = 756

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD+     + GQ  A   +  A++             +     + L  GPTG
Sbjct: 447 SDKDILKNLDQKMKMLVFGQDAAIDVLTEAIK-----LTRAGLGAEHKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTLQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|221483002|gb|EEE21326.1| Clp ATP-binding chain B1, putative [Toxoplasma gondii GT1]
          Length = 1030

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L R ++GQ  A + VA A+      Q+  A L D   P  ++  +GPTGVGKT + 
Sbjct: 728 LEKDLHRRVVGQDHAVQVVAEAI------QRSRAGLNDPNRPIASLFFLGPTGVGKTELC 781

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA L        +K++++++ E   + R
Sbjct: 782 RSLAELMFDSEDAMVKIDMSEYMEKHTISR 811


>gi|154508516|ref|ZP_02044158.1| hypothetical protein ACTODO_01017 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798150|gb|EDN80570.1| hypothetical protein ACTODO_01017 [Actinomyces odontolyticus ATCC
           17982]
          Length = 826

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A +A+A ++R      +  + L+D   P    +  GPTGVGKT +
Sbjct: 516 KMEDELHKRVIGQDEAVKALAQSIR------RTRSGLKDPNRPGGSFIFAGPTGVGKTEL 569

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA          I++++++F+E            GYVG +
Sbjct: 570 AKALAEFLFGDEDALIQLDMSEFSEKHTASRLFGAPPGYVGYD 612


>gi|254230741|ref|ZP_04924068.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium
           tuberculosis C]
 gi|124599800|gb|EAY58810.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium
           tuberculosis C]
          Length = 594

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAIS 70
           +  EL + +IGQ+ A  AV+ A+R      +  A + D   P    + +GPTGVGKT ++
Sbjct: 443 MEDELGKRVIGQKAAVTAVSDAVR------RSRAGVSDPNRPTGAFMFLGPTGVGKTELA 496

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 497 KALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRR 550


>gi|116075417|ref|ZP_01472677.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. RS9916]
 gi|116067614|gb|EAU73368.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Synechococcus sp. RS9916]
          Length = 877

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + S+L   ++GQQ A  AVA A+      Q+  A L D   P  + L +GPTGVGKT +S
Sbjct: 569 LESQLHERVVGQQQAVTAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELS 622

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           + LA          ++++++++ E   V R +      +   A   + E+ R  
Sbjct: 623 KALAAQLFDSDDAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAIRRR 676


>gi|90580379|ref|ZP_01236186.1| putative clpB, ATPase with chaperone activity [Vibrio angustum S14]
 gi|90438681|gb|EAS63865.1| putative clpB, ATPase with chaperone activity [Vibrio angustum S14]
          Length = 858

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVIGQDEAVVAVANAIR------RSRAGLADPQRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|325288483|ref|YP_004264664.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963884|gb|ADY54663.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 841

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L   ++GQ++A  AVA ++R      +  A L+D   P  + + +GPTGVGKT +
Sbjct: 508 KLEEVLHERVVGQEEAVSAVARSVR------RARAGLKDPKRPIGSFIFLGPTGVGKTEL 561

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
           +R LA          I+V+++++ E   V R V      +       + E+ R +
Sbjct: 562 ARALAEALFGDENSLIRVDMSEYMEKHAVSRMVGSPPGYVGHDEGGQLTEAVRRK 616


>gi|261837732|gb|ACX97498.1| metalloprotease [Helicobacter pylori 51]
          Length = 550

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 18  RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
             I G  + K  +      L+N  + Q L        +PK +LL+GP GVGKT I++ LA
Sbjct: 162 EDIAGVNEVKEELLEVIDYLKNPKKYQDLG-----IFLPKGVLLIGPPGVGKTMIAKALA 216

Query: 75  RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134
             A  PF     + F++I YVG   +++    +    +       DE+            
Sbjct: 217 SEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRHAPSIIFIDEIDA---------- 265

Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-----------PG 183
           L    G   +        + L + +   +  ++ V   ++ +   D              
Sbjct: 266 LGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIF 325

Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243
            +   +L    +  K++ + +     + + K            LI+   ++    Q +E 
Sbjct: 326 ISLPDLLERQSILEKLLENKKHALNYLKIAKICVGFSGAMLATLINESALNALKHQRIEI 385

Query: 244 YGIVFLDEFDKIV 256
                L+  DKI 
Sbjct: 386 TESDILEVKDKIA 398


>gi|326203327|ref|ZP_08193192.1| ATPase AAA-2 domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986585|gb|EGD47416.1| ATPase AAA-2 domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 810

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A ++++ A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 503 KMEETLHKRVIGQDEAVKSISKAIR------RGRVGLKDPKRPVGSFIFMGPTGVGKTEL 556

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
            + LA          I+V++++F E   V + V  
Sbjct: 557 CKALAEAMFGDEKSMIRVDMSEFMEKHSVSKLVGS 591


>gi|209965905|ref|YP_002298820.1| ATP-dependent chaperone protein ClpB [Rhodospirillum centenum SW]
 gi|209959371|gb|ACJ00008.1| ATP-dependent chaperone protein ClpB [Rhodospirillum centenum SW]
          Length = 881

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  +L   ++GQ +A  AV+ A+R      +  A L+D   P  + L +GPTGVGKT +
Sbjct: 561 KMEEKLRTRVVGQDEAIVAVSNAVR------RARAGLQDPNRPIGSFLFLGPTGVGKTEL 614

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           ++ LA          ++++++++ E   V R
Sbjct: 615 TKALAGFLFDDETAMVRLDMSEYMEKHSVAR 645


>gi|159037904|ref|YP_001537157.1| ATPase [Salinispora arenicola CNS-205]
 gi|157916739|gb|ABV98166.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
          Length = 848

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L   ++GQ DA  AVA A+     R+        E    + L +GPTGVGKT ++R
Sbjct: 529 LEGHLHEKVVGQDDAVNAVAEAV-----RRSRTGLADPERPMGSFLFLGPTGVGKTELAR 583

Query: 72  RLARLAGAP---FIKVEVTKFTEIGYVGRNV 99
            LA          ++V++++F E   V R V
Sbjct: 584 ALAEALFGEADRMVRVDMSEFQERHTVSRLV 614


>gi|186474276|ref|YP_001861618.1| ATPase [Burkholderia phymatum STM815]
 gi|184196608|gb|ACC74572.1| ATPase AAA-2 domain protein [Burkholderia phymatum STM815]
          Length = 902

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +   L + +IGQ +A  AV+ A+     R+               L +GPTGVGKT +++
Sbjct: 581 MEERLHQRVIGQDEAVVAVSDAV-----RRSRAGLQARHRPTAVFLFLGPTGVGKTELAK 635

Query: 72  RLARLA---GAPFIKVEVTKFTE-----------IGYVGRN 98
            LA +        ++ +++++ E            GYVG +
Sbjct: 636 ALAEVVFGDEDAMLRFDMSEYMERHTVARLIGAPPGYVGYD 676


>gi|110597638|ref|ZP_01385923.1| UvrB/UvrC protein:AAA ATPase, central region:Clp, N terminal
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340758|gb|EAT59235.1| UvrB/UvrC protein:AAA ATPase, central region:Clp, N terminal
           [Chlorobium ferrooxidans DSM 13031]
          Length = 859

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 41/234 (17%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           + ++L + +IGQ +A + +  A+      Q+  A L+D   P  + + +GPTGVGKT ++
Sbjct: 536 MEADLTKEVIGQDEAIKKITKAI------QRTRAGLKDPSRPIGSFIFLGPTGVGKTELA 589

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVG-RNVEQIIRDLVDVAINIVR 115
           + L R         I+ +++++ E            GYVG     Q+   +     ++V 
Sbjct: 590 KALTRYIFDTEDAMIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVL 649

Query: 116 ESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175
               +    +A  +    +L  L     T           R  +  +  I +     + D
Sbjct: 650 IDEIE----KAHPDVFNILLQVLDEGVLTDG-------LGRKVDFRNTIIIMTSNIGAKD 698

Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229
           I +F    G      + S        +G  K ++ +++     +   E    ID
Sbjct: 699 IKSFGAGAGMGFTAPDDS--------TGSYKAMKSTIEDALKRVFNPEFLNRID 744


>gi|91206187|ref|YP_538542.1| ClpB [Rickettsia bellii RML369-C]
 gi|157827795|ref|YP_001496859.1| ClpB [Rickettsia bellii OSU 85-389]
 gi|122990886|sp|Q1RGR1|CLPB_RICBR RecName: Full=Chaperone protein ClpB
 gi|91069731|gb|ABE05453.1| ClpB [Rickettsia bellii RML369-C]
 gi|157803099|gb|ABV79822.1| ClpB [Rickettsia bellii OSU 85-389]
          Length = 858

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 21/111 (18%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  +L   +IGQ +A ++V+ A+R      +  A ++D   P  + L +GPTGVGKT ++
Sbjct: 561 MEQKLRESVIGQDEAIKSVSDAVR------RSRAGIQDINRPLGSFLFLGPTGVGKTELT 614

Query: 71  RRLARLA---GAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107
           + LA          ++++++++ E            GYVG +   ++ + V
Sbjct: 615 KALAGFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYVGYDQGGVLTEAV 665


>gi|15641157|ref|NP_230789.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587406|ref|ZP_01677175.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 2740-80]
 gi|121726319|ref|ZP_01679609.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae V52]
 gi|147674845|ref|YP_001216664.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio cholerae
           O395]
 gi|153214237|ref|ZP_01949272.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 1587]
 gi|153802581|ref|ZP_01957167.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae MZO-3]
 gi|153816921|ref|ZP_01969588.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae NCTC 8457]
 gi|153822003|ref|ZP_01974670.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae B33]
 gi|153826013|ref|ZP_01978680.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae MZO-2]
 gi|153828666|ref|ZP_01981333.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 623-39]
 gi|227081317|ref|YP_002809868.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae M66-2]
 gi|229505261|ref|ZP_04394771.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae BX 330286]
 gi|229511069|ref|ZP_04400548.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae B33]
 gi|229515527|ref|ZP_04404986.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae TMA 21]
 gi|229518189|ref|ZP_04407633.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae RC9]
 gi|229525756|ref|ZP_04415161.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae bv. albensis VL426]
 gi|229529767|ref|ZP_04419157.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae 12129(1)]
 gi|229608280|ref|YP_002878928.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio cholerae
           MJ-1236]
 gi|254225533|ref|ZP_04919143.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae V51]
 gi|254291569|ref|ZP_04962359.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae AM-19226]
 gi|254848272|ref|ZP_05237622.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255745556|ref|ZP_05419504.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio cholera
           CIRS 101]
 gi|262158370|ref|ZP_06029486.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae INDRE 91/1]
 gi|262170182|ref|ZP_06037870.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae RC27]
 gi|297578746|ref|ZP_06940674.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|298498751|ref|ZP_07008558.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae MAK 757]
 gi|9655617|gb|AAF94303.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548326|gb|EAX58390.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 2740-80]
 gi|121631265|gb|EAX63638.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae V52]
 gi|124115486|gb|EAY34306.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 1587]
 gi|124121895|gb|EAY40638.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae MZO-3]
 gi|125622003|gb|EAZ50327.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae V51]
 gi|126512508|gb|EAZ75102.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae NCTC 8457]
 gi|126520468|gb|EAZ77691.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae B33]
 gi|146316728|gb|ABQ21267.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae O395]
 gi|148875819|gb|EDL73954.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae 623-39]
 gi|149740233|gb|EDM54380.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae MZO-2]
 gi|150422521|gb|EDN14478.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae AM-19226]
 gi|227009205|gb|ACP05417.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae M66-2]
 gi|227013011|gb|ACP09221.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Vibrio
           cholerae O395]
 gi|229333541|gb|EEN99027.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae 12129(1)]
 gi|229339337|gb|EEO04354.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae bv. albensis VL426]
 gi|229344904|gb|EEO09878.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae RC9]
 gi|229347296|gb|EEO12256.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae TMA 21]
 gi|229351034|gb|EEO15975.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae B33]
 gi|229357484|gb|EEO22401.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae BX 330286]
 gi|229370935|gb|ACQ61358.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae MJ-1236]
 gi|254843977|gb|EET22391.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
 gi|255736631|gb|EET92028.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio cholera
           CIRS 101]
 gi|262021351|gb|EEY40064.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae RC27]
 gi|262029811|gb|EEY48459.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae INDRE 91/1]
 gi|297536340|gb|EFH75173.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
 gi|297543084|gb|EFH79134.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio
           cholerae MAK 757]
          Length = 756

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 20/121 (16%)

Query: 8   SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63
           S ++I+  LD+     + GQ  A   +  A++             +     + L  GPTG
Sbjct: 447 SDKDILKNLDQKMKMLVFGQDAAIDVLTEAIK-----LTRAGLGAEHKPVGSFLFAGPTG 501

Query: 64  VGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAIN 112
           VGKT ++ +L++L G   ++ +++++ E            GYVG +   ++ D V    +
Sbjct: 502 VGKTEVTLQLSKLLGIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPH 561

Query: 113 I 113
            
Sbjct: 562 S 562


>gi|89075037|ref|ZP_01161478.1| putative clpB, ATPase with chaperone activity [Photobacterium sp.
           SKA34]
 gi|89049124|gb|EAR54689.1| putative clpB, ATPase with chaperone activity [Photobacterium sp.
           SKA34]
          Length = 858

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +  EL   +IGQ +A  AVA A+R      +  A L D   P  + L +GPTGVGKT + 
Sbjct: 562 MEDELHHRVIGQDEAVVAVANAIR------RSRAGLADPQRPIGSFLFLGPTGVGKTELC 615

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
           + LA          +++++++F E   V R V
Sbjct: 616 KSLANFMFDSEEAMVRIDMSEFMEKHSVARLV 647


>gi|315605228|ref|ZP_07880274.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
           sp. oral taxon 180 str. F0310]
 gi|315313045|gb|EFU61116.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
           sp. oral taxon 180 str. F0310]
          Length = 826

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAI 69
           ++  EL + +IGQ +A +A+A ++R      +  + L+D   P    +  GPTGVGKT +
Sbjct: 516 KMEDELHKRVIGQDEAVKALAQSIR------RTRSGLKDPNRPGGSFIFAGPTGVGKTEL 569

Query: 70  SRRLARLA---GAPFIKVEVTKFTEI-----------GYVGRN 98
           ++ LA          I++++++F+E            GYVG +
Sbjct: 570 AKALAEFLFGDEDALIQLDMSEFSEKHTASRLFGAPPGYVGYD 612


>gi|306430649|emb|CBJ17071.1| membrane-associated ATP-dependant Zn protease [Candidatus
           Phytoplasma mali]
          Length = 174

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LL GP G GKT +++ LA  A  PF  V  ++F E+ YVG    ++ R L   A
Sbjct: 60  IPKGVLLEGPPGTGKTLLAKALAGEASIPFYAVSGSEFVEM-YVGVGASRV-RKLFKEA 116


>gi|237749838|ref|ZP_04580318.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
 gi|229374588|gb|EEO24979.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC
           43879]
          Length = 635

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
           +PK +LLVGP G GKT +++ +A  A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASRV-RDLFEKA 262


>gi|85859726|ref|YP_461928.1| clpB protein [Syntrophus aciditrophicus SB]
 gi|85722817|gb|ABC77760.1| clpB protein [Syntrophus aciditrophicus SB]
          Length = 874

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70
           +   L + +IGQ +   AV+ ALR      +  + L+D   P  + + +GPTGVGKT ++
Sbjct: 576 MEDRLKQRVIGQDEGIHAVSAALR------RARSGLQDPNRPIGSFIFLGPTGVGKTELA 629

Query: 71  RRLARLA---GAPFIKVEVTKFTEIGYVGR 97
           R LA          I+++++++ E   V R
Sbjct: 630 RALAEFMFDNEQAMIRIDMSEYMEKHSVAR 659


>gi|291225142|ref|XP_002732560.1| PREDICTED: spastic paraplegia 7-like [Saccoglossus kowalevskii]
          Length = 719

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 18  RYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74
           + + G ++AK  +   +   ++  + Q+L A      +P+  L++GP G GKT + + +A
Sbjct: 248 KDVAGLKEAKIELMEFVDYLKHPQKFQELGAQ-----VPRGALMLGPPGCGKTLLGKAVA 302

Query: 75  RLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDVAINIVRESRRDEV-REQASI 128
             A  PF+ +  ++F E+  G     V  + ++    A  IV     D + R+++  
Sbjct: 303 TEANVPFLAMAGSEFVEMIGGLGAARVRDLFKEARKRAPCIVYIDEIDAIGRKRSEQ 359


>gi|257051091|ref|YP_003128924.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940]
 gi|256689854|gb|ACV10191.1| Vesicle-fusing ATPase [Halorhabdus utahensis DSM 12940]
          Length = 699

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 19  YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78
            + G  D K  +  A+     R     +  D   P  +LL GP G GKT ++R LA    
Sbjct: 444 DVGGLDDVKETLREAVEWPL-RYGPLFEATDTDPPTGVLLYGPPGTGKTLLARSLAGETD 502

Query: 79  APFIKVEVTKFTEIGYVGRN---VEQIIRDLVDVAINIVRESRRDEVREQASINAE--ER 133
             FI+V   +  +  YVG +   V ++       A +IV     D V  Q   + E  ER
Sbjct: 503 VNFIRVAGPELLDR-YVGESEKAVREVFERARQTAPSIVFLDEIDAVATQRGESHEVTER 561

Query: 134 ILDAL 138
           ++  L
Sbjct: 562 VVSQL 566



 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 19/192 (9%)

Query: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI---IRDLVD 108
            PK +LL GP G GKT I+R +A    A F  +   +     Y G + EQ+        D
Sbjct: 219 PPKGVLLYGPPGTGKTLIARAVANEVDAYFEAISGPEIV-SKYKGESEEQLREAFERAED 277

Query: 109 VAINIVRESRRDEVREQASINA--EERI-------LDALVGKTA-----TSNTREVFRKK 154
            A +I+     D +      ++  E R+       LD L  +        +N  +     
Sbjct: 278 EAPSILFVDEIDSIAGARDDDSDMENRVVAQLLTLLDGLESRGQVVVIGATNRVDAVDPA 337

Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQ 213
           LR G   D+EI+I V D        ++   G  +      E  +  M       +   V 
Sbjct: 338 LRRGGRFDREIEIGVPDREGRQEVLEVHTRGVPLDEDVDLERLAGRMHGFVGADVASVVT 397

Query: 214 KCYPELMRDESD 225
           +   E ++ E D
Sbjct: 398 EAAMEALQRERD 409


>gi|254446281|ref|ZP_05059757.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
 gi|198260589|gb|EDY84897.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
          Length = 834

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 19/224 (8%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++  EL   +IGQ +A  A++ ALR      +  ADL+D   P  + + +GPTGVGKT +
Sbjct: 514 QLEKELQEIVIGQDEACVAISKALR------RSRADLKDPKRPIGSFMFMGPTGVGKTFL 567

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126
           +R LA          I+V+++++ E   V R +      +       + E  R +     
Sbjct: 568 ARTLAEKMFGDRDAIIQVDMSEYMEKFSVSRMIGSPPGYVGHEEGGQLSEQVRRKPYSLV 627

Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186
             +  E+         A  +  ++  +   +G ++D    I     +  I   ++     
Sbjct: 628 LFDEIEK---------AHPDVVQIMLQIFEEGHLTDSLGRIIDFRNTIIIMTTNVGASVI 678

Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230
                +    +  M    +      + +       +  +R+ DM
Sbjct: 679 QKQTTMGFGAASSMADDFEGVKTKVMDEAKKVFKPEFLNRINDM 722


>gi|150863744|ref|XP_001382316.2| Heat shock protein 78, mitochondrial precursor HSP78
           [Scheffersomyces stipitis CBS 6054]
 gi|149385000|gb|ABN64287.2| Heat shock protein 78, mitochondrial precursor HSP78
           [Scheffersomyces stipitis CBS 6054]
          Length = 750

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 16  LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
           L + ++GQ +A  AV+ A+     R Q      D+    + + +GPTG GKT +++ LA 
Sbjct: 437 LKQKVVGQDEAIHAVSDAV-----RLQRAGLTSDKRPIASFMFLGPTGTGKTELTKTLAE 491

Query: 76  LA---GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121
                 +  I+ ++++F E   V R +      +       + E+ R +
Sbjct: 492 FIFNDTSSVIRFDMSEFQERHSVSRLIGSPPGYVGYEDSGELTEAVRRK 540


>gi|145220850|ref|YP_001131528.1| ATPase [Mycobacterium gilvum PYR-GCK]
 gi|315442195|ref|YP_004075074.1| ATP-dependent chaperone ClpB [Mycobacterium sp. Spyr1]
 gi|145213336|gb|ABP42740.1| ATPase AAA-2 domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315260498|gb|ADT97239.1| ATP-dependent chaperone ClpB [Mycobacterium sp. Spyr1]
          Length = 848

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 12  IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71
           +  EL + ++GQ+ A  AV+ A+     R+             + + +GPTGVGKT +++
Sbjct: 564 MEEELGKRVVGQRKAVTAVSDAV-----RRSRAGVADPNRPTGSFMFLGPTGVGKTELAK 618

Query: 72  RLARLA---GAPFIKVEVTKFTEIGYVGRNV 99
            LA          ++++++++ E   V R V
Sbjct: 619 ALAEFLFDDERAMVRIDMSEYGEKHSVARLV 649


>gi|331268385|ref|YP_004394877.1| ATPase AAA-2 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329124935|gb|AEB74880.1| ATPase AAA-2 domain protein [Clostridium botulinum BKT015925]
          Length = 813

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 11  EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69
           ++   L + +IGQ +A +++A A+R      +    L+D   P  + + +GPTGVGKT +
Sbjct: 505 KLEEILHKRVIGQNEAVKSIAKAVR------RARVGLKDPKRPIGSFIFLGPTGVGKTEL 558

Query: 70  SRRLARLA---GAPFIKVEVTKFTEIGYVGRNVEQ 101
           S+ LA          I+V+++++ E   V R V  
Sbjct: 559 SKALAEAMFGDENNMIRVDMSEYMEKHAVSRLVGS 593


>gi|326692380|ref|ZP_08229385.1| membrane ATPase FtsH [Leuconostoc argentinum KCTC 3773]
          Length = 691

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 19  YIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75
            + G ++ K+ +      L++  +   L A +     PK +LL GP G GKT +++ +A 
Sbjct: 188 DVAGAEEEKQELVEVVEFLKSPKKFVSLGARI-----PKGVLLEGPPGTGKTLLAKAVAG 242

Query: 76  LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110
            A  PF  +  + F E+ +VG    ++ RDL + A
Sbjct: 243 EASVPFFSMSGSDFVEM-FVGVGASRV-RDLFENA 275


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.147    0.420 

Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,940,682,514
Number of Sequences: 14124377
Number of extensions: 365533817
Number of successful extensions: 1665082
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 22525
Number of HSP's successfully gapped in prelim test: 18408
Number of HSP's that attempted gapping in prelim test: 1560642
Number of HSP's gapped (non-prelim): 85057
length of query: 437
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 295
effective length of database: 2,837,132,096
effective search space: 836953968320
effective search space used: 836953968320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 83 (36.4 bits)